# CleaveLand4 4.5
# Tue Nov 18 06:05:11 AM CET 2025
# Degradome Density File: /home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/HOP_L1_1_final.fasta_dd.txt
# Query Alignment file: /home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/Humulus_lupulus_node343_hotspot_21nt_simple_labels.fasta_GSTAr.txt
# Transcriptome: /home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/hop_flea_trans.oriented.fasta
# P-value cutoff: 1
# Category cutoff: 4
# Output Format: Tabular
SiteID	Query	Transcript	TStart	TStop	TSlice	MFEperfect	MFEsite	MFEratio	AllenScore	Paired	Unpaired	Structure	Sequence	DegradomeCategory	DegradomePval	Tplot_file_path
TRINITY_DN0_c0_g1:1314	si_a351	TRINITY_DN0_c0_g1	1303	1323	1314	-20.50	-15.00	0.731707317073171	9.5	5-21,1319-1303	1-4,1323-1320[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUUAGGAUAGAAUUAGUUACA&AAAUAUUAAUUCUAUUUUGAU	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN0_c0_g1_1314_TPlot.pdf
TRINITY_DN0_c0_g1:1315	si_a350	TRINITY_DN0_c0_g1	1304	1324	1315	-20.30	-13.80	0.679802955665025	11.5	6-21,1319-1304	1-5,1324-1320[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAGGAUAGAAUUAGUUACAU&AAAAUAUUAAUUCUAUUUUGA	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN0_c0_g1_1315_TPlot.pdf
TRINITY_DN0_c0_g1:141	si_s598	TRINITY_DN0_c0_g1	130	149	141	-28.20	-19.30	0.684397163120567	8.5	3-8,147-142;10-18,141-133	1-2,149-148[UP5];9-9,x-x[BULq];19-21,132-130[UP3]	...(((((((((-((((((..&..)))))).)))))))))...	CACAAGGUUCGC-UGGAUUCA&UAAAUCCAAGCGAAUCUUUUU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN0_c0_g1_141_TPlot.pdf
TRINITY_DN0_c0_g1:142	si_s597	TRINITY_DN0_c0_g1	131	150	142	-28.40	-19.30	0.679577464788732	9.5	4-9,147-142;11-19,141-133	1-3,150-148[UP5];10-10,x-x[BULq];20-21,132-131[UP3]	..(((((((((-((((((...&...)))))).)))))))))..	ACAAGGUUCGC-UGGAUUCAG&AUAAAUCCAAGCGAAUCUUUU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN0_c0_g1_142_TPlot.pdf
TRINITY_DN0_c0_g1:377	si_a151	TRINITY_DN0_c0_g1	366	388	377	-28.90	-18.80	0.650519031141869	9.5	1-9,388-380;10-17,377-370	x-x,379-378[BULt];18-21,369-366[UP3]	....((((((((..(((((((((&)))))))))--))))))))....	UUAGUGGCCUUAAAGAACAACAA&UUGUUGUUU--UAAGGUCAAUCU	2	0.995260596514365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN0_c0_g1_377_TPlot.pdf
TRINITY_DN0_c0_g1:380	si_a150	TRINITY_DN0_c0_g1	367	389	380	-29.90	-20.10	0.672240802675585	9	1-10,389-380;11-18,377-370	x-x,379-378[BULt];19-21,369-367[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	UAGUGGCCUUAAAGAACAACAAU&GUUGUUGUUU--UAAGGUCAAUC	2	0.97359694244819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN0_c0_g1_380_TPlot.pdf
TRINITY_DN0_c0_g1:381	si_a149	TRINITY_DN0_c0_g1	368	390	381	-29.40	-20.20	0.687074829931973	9.5	2-11,389-380;12-19,377-370	1-1,390-390[UP5];x-x,379-378[BULt];20-21,369-368[UP3]	..((((((((..((((((((((.&.))))))))))--))))))))..	AGUGGCCUUAAAGAACAACAAUC&CGUUGUUGUUU--UAAGGUCAAU	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN0_c0_g1_381_TPlot.pdf
TRINITY_DN0_c0_g1:382	si_a148	TRINITY_DN0_c0_g1	369	391	382	-30.30	-20.20	0.666666666666667	10.5	3-12,389-380;13-20,377-370	1-2,391-390[UP5];x-x,379-378[BULt];21-21,369-369[UP3]	.((((((((..((((((((((..&..))))))))))--)))))))).	GUGGCCUUAAAGAACAACAAUCC&UCGUUGUUGUUU--UAAGGUCAA	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN0_c0_g1_382_TPlot.pdf
TRINITY_DN0_c0_g1:383	si_a147	TRINITY_DN0_c0_g1	370	392	383	-30.40	-20.00	0.657894736842105	9	4-13,389-380;14-21,377-370	1-3,392-390[UP5];x-x,379-378[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	UGGCCUUAAAGAACAACAAUCCC&AUCGUUGUUGUUU--UAAGGUCA	2	0.999923938277612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN0_c0_g1_383_TPlot.pdf
TRINITY_DN0_c0_g2:1057	si_s614	TRINITY_DN0_c0_g2	1042	1066	1057	-28.30	-21.70	0.76678445229682	9	2-16,1065-1051;17-20,1046-1043	1-1,1066-1066[UP5];x-x,1050-1047[BULt];21-21,1042-1042[UP3]	.((((....(((((((((((((((.&.)))))))))))))))----)))).	CGAUCAGUGGCUUGGAUUUGAGGAU&UUUUUUAAAUCCAAGC----GAUCU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN0_c0_g2_1057_TPlot.pdf
TRINITY_DN0_c0_g2:851	si_a484	TRINITY_DN0_c0_g2	839	860	851	-27.30	-18.20	0.666666666666667	7.5	2-13,859-848;14-19,846-841	1-1,860-860[UP5];x-x,847-847[BULt];20-21,840-839[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	AUUGGCAUAGUUCUAUAUGGCC&UGUUAUAUAGAAU-AUGUCGUU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN0_c0_g2_851_TPlot.pdf
TRINITY_DN0_c0_g3:478	si_s537	TRINITY_DN0_c0_g3	466	487	478	-26.40	-17.50	0.662878787878788	8.5	1-12,487-476;13-20,474-467	x-x,475-475[BULt];21-21,466-466[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	GGUUUUGAUAUGGAUUGGGAAU&AUUUUUGAUCCG-AUCAAAAUA	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN0_c0_g3_478_TPlot.pdf
TRINITY_DN0_c0_g3:479	si_s519	TRINITY_DN0_c0_g3	463	488	479	-24.40	-16.60	0.680327868852459	13.5	1-10,488-479;11-21,473-463	x-x,478-474[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	GAUGGUUUUGAUAUGGAUUGGGAAUA&UAUUCUUAAU-----UCGAAAUCAUU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN0_c0_g3_479_TPlot.pdf
TRINITY_DN0_c0_g3:506	si_s809	TRINITY_DN0_c0_g3	495	515	506	-28.50	-20.60	0.72280701754386	7	3-11,513-505;13-21,503-495	1-2,515-514[UP5];12-12,504-504[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUUAAGAGGUGGUAACGAGAC&UCUUCGUUACCUUUUCUUAAU	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN0_c0_g3_506_TPlot.pdf
TRINITY_DN10002_c0_g1:3087	si_a410	TRINITY_DN10002_c0_g1	3076	3096	3087	-17.80	-12.70	0.713483146067416	8.5	3-18,3094-3079	1-2,3096-3095[UP5];19-21,3078-3076[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUGAUUUGAAUGUAAAUAACG&UUUUGUUUAUAUUUAAAUAAA	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN10002_c0_g1_3087_TPlot.pdf
TRINITY_DN10002_c0_g1:3191	si_a318	TRINITY_DN10002_c0_g1	3180	3199	3191	-22.50	-15.00	0.666666666666667	9	1-8,3199-3192;10-18,3191-3183	9-9,x-x[BULq];19-21,3182-3180[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AAUGGAGGAUCA-GGAUGGAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN10002_c0_g1_3191_TPlot.pdf
TRINITY_DN10002_c0_g1:3197	si_s527	TRINITY_DN10002_c0_g1	3186	3206	3197	-28.00	-18.50	0.660714285714286	12	3-5,3204-3202;8-10,3199-3197;13-21,3194-3186	1-2,3206-3205[UP5];6-7,3201-3200[SIL];11-12,3196-3195[SIL]	(((((((((..(((..(((..&..)))..)))..)))))))))	GGAUCAGGAUGGAUAGCGAUA&AUUCGAAAUCAUUUUUGAUCC	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN10002_c0_g1_3197_TPlot.pdf
TRINITY_DN10002_c0_g1:967	si_a784	TRINITY_DN10002_c0_g1	955	976	967	-24.70	-17.40	0.704453441295547	11.5	2-11,975-966;13-19,963-957	1-1,976-976[UP5];12-12,965-964[AILt];20-21,956-955[UP3]	..(((((((..((((((((((.&.))))))))))-.)))))))..	ACGAUAGAAUUAGUGGGGGAGG&ACUCUUCUAUU-UUUCUAUUUU	2	0.999982268446539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10002_c0_g1_967_TPlot.pdf
TRINITY_DN10003_c0_g1:4394	si_a65	TRINITY_DN10003_c0_g1	4382	4403	4394	-27.70	-18.40	0.664259927797834	6.5	1-12,4403-4392;14-20,4389-4383	13-13,4391-4390[AILt];21-21,4382-4382[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	CAAAUAAUAAUGAAGGAAGUGA&UCGCUUCUUUCA-AAUUGUUUU	4	0.999999988827076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN10003_c0_g1_4394_TPlot.pdf
TRINITY_DN10003_c0_g1:4403	si_a56	TRINITY_DN10003_c0_g1	4392	4413	4403	-38.90	-25.70	0.660668380462725	7.5	1-8,4413-4406;10-21,4403-4392	9-9,4405-4404[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	UGAAGGAAGUGACAUUGACUUC&GGAGUCGA-CUCGCUUCUUUCA	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN10003_c0_g1_4403_TPlot.pdf
TRINITY_DN10003_c0_g1:5348	si_s18	TRINITY_DN10003_c0_g1	5337	5358	5348	-27.50	-19.20	0.698181818181818	9.5	1-8,5358-5351;9-17,5349-5341	x-x,5350-5350[BULt];18-21,5340-5337[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	GACAGCAGUCAGUAGUAGUAGU&AUUACUAU-AUUGAUUGCAACU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN10003_c0_g1_5348_TPlot.pdf
TRINITY_DN10003_c0_g1:6088	si_a326	TRINITY_DN10003_c0_g1	6076	6097	6088	-26.20	-17.70	0.675572519083969	8	2-11,6096-6087;13-20,6084-6077	1-1,6097-6097[UP5];12-12,6086-6085[AILt];21-21,6076-6076[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	AACAAGGAACCAAGAAAGUCAG&AUGAUUUUUUU-AUUCCUUGUC	2	0.999940699237118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN10003_c0_g1_6088_TPlot.pdf
TRINITY_DN10003_c0_g1:6089	si_a325	TRINITY_DN10003_c0_g1	6077	6099	6089	-25.90	-18.20	0.702702702702703	7	1-2,6099-6098;3-12,6096-6087;14-21,6084-6077	x-x,6097-6097[BULt];13-13,6086-6085[AILt]	((((((((..((((((((((.((&))-))))))))))-.))))))))	ACAAGGAACCAAGAAAGUCAGUG&CA-UGAUUUUUUU-AUUCCUUGU	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN10003_c0_g1_6089_TPlot.pdf
TRINITY_DN10003_c0_g1:6090	si_a324	TRINITY_DN10003_c0_g1	6078	6100	6090	-27.50	-19.30	0.701818181818182	6	1-3,6100-6098;4-13,6096-6087;15-21,6084-6078	x-x,6097-6097[BULt];14-14,6086-6085[AILt]	(((((((..((((((((((.(((&)))-))))))))))-.)))))))	CAAGGAACCAAGAAAGUCAGUGG&CCA-UGAUUUUUUU-AUUCCUUG	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN10003_c0_g1_6090_TPlot.pdf
TRINITY_DN10003_c0_g1:6189	si_a323	TRINITY_DN10003_c0_g1	6178	6198	6189	-26.80	-18.20	0.67910447761194	7.5	1-5,6198-6194;7-17,6192-6182;19-21,6180-6178	6-6,6193-6193[SIL];18-18,6181-6181[SIL]	(((.(((((((((((.(((((&))))).))))))))))).)))	GAGUGAUAGGAAAGUGGUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.999988508924018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN10003_c0_g1_6189_TPlot.pdf
TRINITY_DN10003_c0_g1:6192	si_a320	TRINITY_DN10003_c0_g1	6181	6201	6192	-24.40	-16.00	0.655737704918033	11.5	4-8,6198-6194;10-20,6192-6182	1-3,6201-6199[UP5];9-9,6193-6193[SIL];21-21,6181-6181[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	UGAUAGGAAAGUGGUGGAAAA&UUAUCCAUGAUUUUUUUAUUC	2	0.999996067160338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN10003_c0_g1_6192_TPlot.pdf
TRINITY_DN10003_c0_g1:6194	si_a318	TRINITY_DN10003_c0_g1	6183	6203	6194	-22.50	-14.90	0.662222222222222	13.5	6-10,6198-6194;12-21,6192-6183	1-5,6203-6199[UP5];11-11,6193-6193[SIL]	((((((((((.(((((.....&.....))))).))))))))))	AUAGGAAAGUGGUGGAAAAUA&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN10003_c0_g1_6194_TPlot.pdf
TRINITY_DN10004_c0_g1:2300	si_s320	TRINITY_DN10004_c0_g1	2288	2309	2300	-31.00	-20.60	0.664516129032258	10	1-7,2309-2303;10-11,2300-2299;12-18,2297-2291	8-9,2302-2301[SIL];x-x,2298-2298[BULt];19-21,2290-2288[UP3]	...(((((((.((..(((((((&)))))))..))-)))))))...	GGAGUUUGUGAACUCGAAGGAC&GUCCUUCUUGU-UACAAACAUA	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN10004_c0_g1_2300_TPlot.pdf
TRINITY_DN10004_c0_g1:2301	si_s319	TRINITY_DN10004_c0_g1	2289	2310	2301	-31.30	-21.60	0.690095846645367	8.5	1-8,2310-2303;11-12,2300-2299;13-19,2297-2291	9-10,2302-2301[SIL];x-x,2298-2298[BULt];20-21,2290-2289[UP3]	..(((((((.((..((((((((&))))))))..))-)))))))..	GAGUUUGUGAACUCGAAGGACA&UGUCCUUCUUGU-UACAAACAU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN10004_c0_g1_2301_TPlot.pdf
TRINITY_DN10004_c0_g1:2302	si_s318	TRINITY_DN10004_c0_g1	2290	2311	2302	-32.80	-21.80	0.664634146341463	7.5	2-9,2310-2303;12-13,2300-2299;14-20,2297-2291	1-1,2311-2311[UP5];10-11,2302-2301[SIL];x-x,2298-2298[BULt];21-21,2290-2290[UP3]	.(((((((.((..((((((((.&.))))))))..))-))))))).	AGUUUGUGAACUCGAAGGACAA&CUGUCCUUCUUGU-UACAAACA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN10004_c0_g1_2302_TPlot.pdf
TRINITY_DN1000_c0_g1:1476	si_s898	TRINITY_DN1000_c0_g1	1465	1485	1476	-30.70	-21.30	0.693811074918567	4.5	2-10,1484-1476;12-14,1474-1472;16-21,1470-1465	1-1,1485-1485[UP5];11-11,1475-1475[SIL];15-15,1471-1471[SIL]	((((((.(((.(((((((((.&.))))))))).))).))))))	GUUGAACUUGCAGAGAAAGCA&GGCUUUCUCUUCAAUUUCAAU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN1000_c0_g1_1476_TPlot.pdf
TRINITY_DN1000_c0_g1:1527	si_a18	TRINITY_DN1000_c0_g1	1516	1536	1527	-26.30	-20.10	0.76425855513308	8	2-19,1535-1518	1-1,1536-1536[UP5];20-21,1517-1516[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AUACUAGGAGUGGAUAGGUUA&AAGCCUAUUUAUUUUUAGUUC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN1000_c0_g1_1527_TPlot.pdf
TRINITY_DN1000_c0_g1:1529	si_a16	TRINITY_DN1000_c0_g1	1518	1538	1529	-26.30	-20.10	0.76425855513308	9.5	4-21,1535-1518	1-3,1538-1536[UP5]	((((((((((((((((((...&...))))))))))))))))))	ACUAGGAGUGGAUAGGUUAGA&GAAAGCCUAUUUAUUUUUAGU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1000_c0_g1_1529_TPlot.pdf
TRINITY_DN10016_c0_g1:3840	si_a66	TRINITY_DN10016_c0_g1	3828	3849	3840	-26.70	-20.20	0.756554307116105	6.5	1-15,3849-3835;16-19,3833-3830	x-x,3834-3834[BULt];20-21,3829-3828[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	AUAAGCAAAUUUGAAGGAGGUG&CGCUUCUUUCAAAUU-GUUUUU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN10016_c0_g1_3840_TPlot.pdf
TRINITY_DN10016_c0_g1:8268	si_a828	TRINITY_DN10016_c0_g1	8257	8278	8268	-24.10	-15.70	0.651452282157676	6	2-3,8277-8276;4-18,8274-8260	1-1,8278-8278[UP5];x-x,8275-8275[BULt];19-21,8259-8257[UP3]	...(((((((((((((((.((.&.))-)))))))))))))))...	GUAUAUUUUUUUUCUUUCACUA&AAG-GAAAGAAAAAAAAUAGAA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN10016_c0_g1_8268_TPlot.pdf
TRINITY_DN10016_c0_g2:1273	si_a780	TRINITY_DN10016_c0_g2	1263	1282	1273	-27.30	-19.90	0.728937728937729	6.5	1-13,1282-1270;16-19,1268-1265	14-15,1269-1269[AILq];20-21,1264-1263[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	GCGAGAU-UGGAAGAGUUGGA&UUCAACUCUUCUAUUUUUCUA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN10016_c0_g2_1273_TPlot.pdf
TRINITY_DN10016_c0_g5:4386	si_a34	TRINITY_DN10016_c0_g5	4374	4397	4386	-38.10	-25.80	0.677165354330709	7.5	1-7,4397-4391;8-11,4388-4385;12-21,4383-4374	x-x,4390-4389[BULt];x-x,4384-4384[BULt]	((((((((((.((((..(((((((&)))))))--))))-))))))))))	GGAUCUACUGAGUCUCUUAGAACU&AGUUCUA--AGAC-CGGUAGGUCU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a34_TRINITY_DN10016_c0_g5_4386_TPlot.pdf
TRINITY_DN1001_c0_g1:1070	si_a630	TRINITY_DN1001_c0_g1	1059	1079	1070	-25.80	-17.00	0.65891472868217	10	4-20,1076-1060	1-3,1079-1077[UP5];21-21,1059-1059[UP3]	.(((((((((((((((((...&...))))))))))))))))).	ACAAAGAGAUUGAUAUGAAAA&GUAUUAUGUCGAUUUUUUUGA	3	0.999999943041421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN1001_c0_g1_1070_TPlot.pdf
TRINITY_DN1001_c0_g1:1325	si_a634	TRINITY_DN1001_c0_g1	1311	1334	1325	-26.40	-18.00	0.681818181818182	10.5	4-15,1331-1320;16-21,1316-1311	1-3,1334-1332[UP5];x-x,1319-1317[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	UUACUCCACAAGGAAGUCGACUUC&UAUGUCGAUUUUUUU---GAGUAA	4	0.999998279742994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1001_c0_g1_1325_TPlot.pdf
TRINITY_DN1001_c0_g1:1679	si_a850	TRINITY_DN1001_c0_g1	1668	1688	1679	-29.00	-19.00	0.655172413793103	8	1-7,1688-1682;9-18,1680-1671	8-8,1681-1681[SIL];19-21,1670-1668[UP3]	...((((((((((.(((((((&))))))).))))))))))...	CACUGGAUUUCGAUUUGGUAA&UUGCUAACUUGAAAUCCAAUU	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN1001_c0_g1_1679_TPlot.pdf
TRINITY_DN1001_c0_g1:1758	si_a786	TRINITY_DN1001_c0_g1	1747	1767	1758	-26.60	-17.60	0.661654135338346	3.5	1-14,1767-1754;16-19,1752-1749	15-15,1753-1753[SIL];20-21,1748-1747[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	CAAAAAAGGAAAAAUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1001_c0_g1_1758_TPlot.pdf
TRINITY_DN1001_c0_g1:1759	si_a785	TRINITY_DN1001_c0_g1	1748	1768	1759	-25.90	-17.80	0.687258687258687	3.5	2-15,1767-1754;17-20,1752-1749	1-1,1768-1768[UP5];16-16,1753-1753[SIL];21-21,1748-1748[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AAAAAAGGAAAAAUAGAAGAA&CUCUUCUAUUUUUCUAUUUUC	3	0.999999999998727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1001_c0_g1_1759_TPlot.pdf
TRINITY_DN1001_c0_g1:1761	si_a783	TRINITY_DN1001_c0_g1	1750	1770	1761	-24.70	-17.30	0.700404858299595	9.5	4-17,1767-1754	1-3,1770-1768[UP5];18-21,1753-1750[UP3]	....((((((((((((((...&...))))))))))))))....	AAAAGGAAAAAUAGAAGAAAG&AACUCUUCUAUUUUUCUAUUU	4	0.999999982037834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1001_c0_g1_1761_TPlot.pdf
TRINITY_DN1001_c0_g1:2932	si_a78	TRINITY_DN1001_c0_g1	2921	2941	2932	-22.30	-18.50	0.829596412556054	6	3-19,2939-2923	1-2,2941-2940[UP5];20-21,2922-2921[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GACUUAAUAAUGAAAAACGCA&AUUGUUUUUCAUUAUUAAGAA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN1001_c0_g1_2932_TPlot.pdf
TRINITY_DN1001_c0_g1:2934	si_a76	TRINITY_DN1001_c0_g1	2923	2943	2934	-21.20	-18.50	0.872641509433962	8	5-21,2939-2923	1-4,2943-2940[UP5]	(((((((((((((((((....&....)))))))))))))))))	CUUAAUAAUGAAAAACGCAAU&AAAUUGUUUUUCAUUAUUAAG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1001_c0_g1_2934_TPlot.pdf
TRINITY_DN1001_c0_g1:2949	si_a760	TRINITY_DN1001_c0_g1	2938	2958	2949	-31.10	-23.70	0.762057877813505	6	1-8,2958-2951;10-19,2949-2940	9-9,2950-2950[SIL];20-21,2939-2938[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	CGCAAUCAAGAAGCUAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1001_c0_g1_2949_TPlot.pdf
TRINITY_DN10022_c1_g1:149	si_s707	TRINITY_DN10022_c1_g1	137	158	149	-30.90	-20.50	0.663430420711974	12.5	6-12,153-147;13-21,145-137	1-5,158-154[UP5];x-x,146-146[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	CUUUUCCUGCUUCGCUAUAUUA&UUUAUUAGUGAA-CAGGGAAAG	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s707_TRINITY_DN10022_c1_g1_149_TPlot.pdf
TRINITY_DN10024_c0_g1:574	si_s440	TRINITY_DN10024_c0_g1	563	583	574	-21.60	-15.90	0.736111111111111	6	1-16,583-568	17-21,567-563[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACAAAAUAUGUAAUAUGUAAU&AUUACAUAUUAUAUAUAACAA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN10024_c0_g1_574_TPlot.pdf
TRINITY_DN10024_c0_g1:575	si_s439	TRINITY_DN10024_c0_g1	564	584	575	-21.50	-16.10	0.748837209302326	5.5	2-17,583-568	1-1,584-584[UP5];18-21,567-564[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAAAAUAUGUAAUAUGUAAUA&AAUUACAUAUUAUAUAUAACA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN10024_c0_g1_575_TPlot.pdf
TRINITY_DN10024_c0_g1:576	si_s438	TRINITY_DN10024_c0_g1	565	585	576	-21.20	-16.10	0.759433962264151	6.5	3-18,583-568	1-2,585-584[UP5];19-21,567-565[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAUAUGUAAUAUGUAAUAG&UAAUUACAUAUUAUAUAUAAC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN10024_c0_g1_576_TPlot.pdf
TRINITY_DN10024_c0_g1:577	si_s437	TRINITY_DN10024_c0_g1	566	586	577	-19.70	-16.10	0.817258883248731	7.5	4-19,583-568	1-3,586-584[UP5];20-21,567-566[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAUAUGUAAUAUGUAAUAGU&AUAAUUACAUAUUAUAUAUAA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN10024_c0_g1_577_TPlot.pdf
TRINITY_DN10025_c0_g1:543	si_s66	TRINITY_DN10025_c0_g1	533	553	543	-26.30	-17.20	0.653992395437262	7.5	1-3,553-551;5-10,548-543;12-21,542-533	4-4,550-549[AILt];11-11,x-x[BULq]	((((((((((-((((((..(((&)))-.)))))).))))))))))	AGAAAGAAAA-GGAAGUCGGCU&AGC-AACUUCUAUUUUUUUUCU	3	0.999999999873981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN10025_c0_g1_543_TPlot.pdf
TRINITY_DN10025_c0_g1:562	si_a626	TRINITY_DN10025_c0_g1	543	571	562	-30.20	-19.64	0.650331125827815	22	2-10,570-562;12-21,552-543	1-1,571-571[UP5];11-11,561-553[AILt]	((((((((((.........(((((((((.&.)))))))))--------.))))))))))	GGAAGUCGGCUGUAUUAACUGAUACGCCA&AGGCGUAUUA--------UGUCGAUUUUU	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN10025_c0_g1_562_TPlot.pdf
TRINITY_DN10031_c0_g1:1375	si_a876	TRINITY_DN10031_c0_g1	1364	1384	1375	-27.30	-18.40	0.673992673992674	7	1-16,1384-1369	17-21,1368-1364[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUCAAGAUUGCAAUUAAAUUU&AGAUUUAGUUGCAAUCAAUAU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN10031_c0_g1_1375_TPlot.pdf
TRINITY_DN10031_c0_g1:1944	si_s765	TRINITY_DN10031_c0_g1	1933	1954	1944	-25.70	-20.00	0.778210116731518	5.5	1-9,1954-1946;10-19,1944-1935	x-x,1945-1945[BULt];20-21,1934-1933[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	ACAUAGUGAUUGAAUCGUUGUU&AACAACGAU-UAAUUACUAUUG	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s765_TRINITY_DN10031_c0_g1_1944_TPlot.pdf
TRINITY_DN10031_c0_g1:1946	si_s764	TRINITY_DN10031_c0_g1	1934	1955	1946	-25.70	-22.50	0.875486381322957	4.5	1-10,1955-1946;11-20,1944-1935	x-x,1945-1945[BULt];21-21,1934-1934[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	CAUAGUGAUUGAAUCGUUGUUG&CAACAACGAU-UAAUUACUAUU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN10031_c0_g1_1946_TPlot.pdf
TRINITY_DN10033_c0_g1:2495	si_a643	TRINITY_DN10033_c0_g1	2486	2504	2495	-28.30	-19.30	0.681978798586572	8	3-11,2502-2494;15-21,2492-2486	1-2,2504-2503[UP5];12-14,2493-2493[AILq]	(((((((.--(((((((((..&..)))))))))...)))))))	CCCGAUAA--UACUCAGAACU&UUUUUUGAGUAAUAUAUCGGG	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN10033_c0_g1_2495_TPlot.pdf
TRINITY_DN10042_c2_g4:1667	si_a409	TRINITY_DN10042_c2_g4	1656	1676	1667	-19.50	-13.00	0.666666666666667	8.5	1-5,1676-1672;7-16,1670-1661	6-6,1671-1671[SIL];17-21,1660-1656[UP3]	.....((((((((((.(((((&))))).)))))))))).....	AGUAGUAAGUAUAAAGAAGAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999999872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10042_c2_g4_1667_TPlot.pdf
TRINITY_DN10047_c0_g1:1301	si_a221	TRINITY_DN10047_c0_g1	1290	1310	1301	-25.20	-18.40	0.73015873015873	14.5	6-19,1305-1292	1-5,1310-1306[UP5];20-21,1291-1290[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGGUAGGAGCGUGGGUAGGAC&AUUAAACUCAUGUUUCUAUAA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN10047_c0_g1_1301_TPlot.pdf
TRINITY_DN10047_c0_g1:290	si_a125	TRINITY_DN10047_c0_g1	279	300	290	-25.00	-16.50	0.66	8.5	1-6,300-295;7-17,293-283	x-x,294-294[BULt];18-21,282-279[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	GACCGCUAUUGUUAUAAAAGCA&UGUUUU-AUAGCAAUAGUAAUU	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN10047_c0_g1_290_TPlot.pdf
TRINITY_DN1004_c0_g1:472	si_a661	TRINITY_DN1004_c0_g1	461	483	472	-35.80	-23.36	0.652513966480447	13	1-4,483-480;8-13,474-469;15-20,467-462	5-7,479-475[AILt];14-14,468-468[SIL];21-21,461-461[UP3]	.((((((.((((((.....((((&))))--...)))))).)))))).	UGGAAUCUAUGGGCUGAUCUCCC&GGGA--AAUGCCUAUUGAUUCCU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a661_TRINITY_DN1004_c0_g1_472_TPlot.pdf
TRINITY_DN1004_c0_g1:665	si_s130	TRINITY_DN1004_c0_g1	654	674	665	-28.70	-19.20	0.668989547038327	5.5	1-14,674-661;16-20,659-655	15-15,660-660[SIL];21-21,654-654[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CUUUGGCUGGUUCAAUUUUUC&GAAGAGUUGAAUCAAUCAAAA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN1004_c0_g1_665_TPlot.pdf
TRINITY_DN10051_c0_g1:1085	si_a792	TRINITY_DN10051_c0_g1	1072	1094	1085	-27.60	-18.30	0.66304347826087	12.5	5-16,1090-1079;17-20,1076-1073	1-4,1094-1091[UP5];x-x,1078-1077[BULt];21-21,1072-1072[UP3]	.((((..((((((((((((....&....))))))))))))--)))).	GGGGUCAUGGAGAAUGGAAUGGA&AUUUUUCUAUUUUCCA--AUCCG	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN10051_c0_g1_1085_TPlot.pdf
TRINITY_DN10051_c0_g1:960	si_s72	TRINITY_DN10051_c0_g1	949	969	960	-24.10	-16.50	0.684647302904564	7.5	1-4,969-966;6-14,964-956;16-21,954-949	5-5,965-965[SIL];15-15,955-955[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	GAGGAGUGGAGGAAGAAAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10051_c0_g1_960_TPlot.pdf
TRINITY_DN1005_c0_g1:3430	si_a640	TRINITY_DN1005_c0_g1	3419	3439	3430	-24.10	-17.70	0.734439834024896	5.5	2-18,3438-3422	1-1,3439-3439[UP5];19-21,3421-3419[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAAAUAUUGCUCGAAAAAAUA&GAUUUUUUUGAGUAAUAUAUC	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN1005_c0_g1_3430_TPlot.pdf
TRINITY_DN1005_c0_g1:3431	si_a639	TRINITY_DN1005_c0_g1	3420	3440	3431	-23.60	-17.70	0.75	6.5	3-19,3438-3422	1-2,3440-3439[UP5];20-21,3421-3420[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAUAUUGCUCGAAAAAAUAU&CGAUUUUUUUGAGUAAUAUAU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN1005_c0_g1_3431_TPlot.pdf
TRINITY_DN1005_c0_g1:3432	si_a638	TRINITY_DN1005_c0_g1	3421	3441	3432	-24.40	-17.70	0.725409836065574	7.5	4-20,3438-3422	1-3,3441-3439[UP5];21-21,3421-3421[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAUAUUGCUCGAAAAAAUAUA&UCGAUUUUUUUGAGUAAUAUA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN1005_c0_g1_3432_TPlot.pdf
TRINITY_DN1005_c0_g1:3666	si_s34	TRINITY_DN1005_c0_g1	3653	3675	3666	-23.30	-15.64	0.671244635193133	9.5	1-12,3675-3664;17-21,3657-3653	13-16,3663-3658[AILt]	(((((......((((((((((((&))))))))))))--....)))))	CGAUUUUAAAUAGGAUUUAGUUG&CAACUAAAUCUU--UAAUAAUUG	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN1005_c0_g1_3666_TPlot.pdf
TRINITY_DN1005_c0_g1:5855	si_a184	TRINITY_DN1005_c0_g1	5846	5863	5855	-31.70	-22.40	0.706624605678233	7.5	1-9,5863-5855;13-21,5854-5846	10-12,x-x[BULq]	(((((((((---(((((((((&)))))))))...)))))))))	GAACGGGGA---AUGUUAUCU&AGAUAAUAUCUUUCCCUGUUC	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN1005_c0_g1_5855_TPlot.pdf
TRINITY_DN1005_c0_g1:6123	si_s50	TRINITY_DN1005_c0_g1	6112	6132	6123	-29.00	-18.90	0.651724137931034	10	4-16,6129-6117;19-20,6114-6113	1-3,6132-6130[UP5];17-18,6116-6115[SIL];21-21,6112-6112[UP3]	.((..(((((((((((((...&...)))))))))))))..)).	AUGGAAACUUGGAGUCCAUUC&AAUUGGAUUUCAAGUUAGCAA	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN1005_c0_g1_6123_TPlot.pdf
TRINITY_DN1005_c0_g1:6127	si_s46	TRINITY_DN1005_c0_g1	6116	6136	6127	-25.00	-17.50	0.7	15.5	8-20,6129-6117	1-7,6136-6130[UP5];21-21,6116-6116[UP3]	.(((((((((((((.......&.......))))))))))))).	AAACUUGGAGUCCAUUCGAAC&UAAUAAUUGGAUUUCAAGUUA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN1005_c0_g1_6127_TPlot.pdf
TRINITY_DN1005_c0_g1:6129	si_s44	TRINITY_DN1005_c0_g1	6118	6138	6129	-24.70	-16.30	0.659919028340081	18	10-21,6129-6118	1-9,6138-6130[UP5]	((((((((((((.........&.........))))))))))))	ACUUGGAGUCCAUUCGAACAC&UUUAAUAAUUGGAUUUCAAGU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN1005_c0_g1_6129_TPlot.pdf
TRINITY_DN1005_c0_g1:6834	si_a404	TRINITY_DN1005_c0_g1	6823	6843	6834	-21.70	-14.30	0.658986175115207	6.5	1-13,6843-6831;15-19,6829-6825	14-14,6830-6830[SIL];20-21,6824-6823[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	GUAAUAUUAACAAGACGGUUU&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1005_c0_g1_6834_TPlot.pdf
TRINITY_DN1005_c0_g1:7074	si_a822	TRINITY_DN1005_c0_g1	7061	7083	7074	-26.20	-17.60	0.67175572519084	7	2-9,7082-7075;11-11,7073-7073;12-21,7070-7061	1-1,7083-7083[UP5];10-10,7074-7074[SIL];x-x,7072-7071[BULt]	((((((((((..(.((((((((.&.)))))))).)--))))))))))	UUUUUUUCUUUAUGCUUUCUUCG&AGAAGAAAGGA--AAGAAAAAAA	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a822_TRINITY_DN1005_c0_g1_7074_TPlot.pdf
TRINITY_DN1005_c0_g4:261	si_s441	TRINITY_DN1005_c0_g4	246	270	261	-23.20	-15.10	0.650862068965517	8.5	1-5,270-266;7-16,264-255;17-21,250-246	6-6,265-265[SIL];x-x,254-251[BULt]	(((((....((((((((((.(((((&))))).))))))))))----)))))	GUUGUGUUCUGUGUAUGAUUUGUAG&UUACAUAUUAUAUAUA----ACAAC	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN1005_c0_g4_261_TPlot.pdf
TRINITY_DN1005_c0_g5:170	si_s441	TRINITY_DN1005_c0_g5	155	179	170	-23.20	-15.10	0.650862068965517	8.5	1-5,179-175;7-16,173-164;17-21,159-155	6-6,174-174[SIL];x-x,163-160[BULt]	(((((....((((((((((.(((((&))))).))))))))))----)))))	GUUGUGUUCUGUGUAUGAUUUGUAG&UUACAUAUUAUAUAUA----ACAAC	1	0.0508950762212194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN1005_c0_g5_170_TPlot.pdf
TRINITY_DN1005_c0_g5:34	si_a283	TRINITY_DN1005_c0_g5	23	43	34	-28.30	-18.50	0.653710247349823	11.5	5-18,39-26	1-4,43-40[UP5];19-21,25-23[UP3]	...((((((((((((((....&....))))))))))))))...	UAAAAAUUCAAGUGAUCAUCA&AAAAGAUCGCUUGGAUUUAAA	4	0.999998763609859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN1005_c0_g5_34_TPlot.pdf
TRINITY_DN10061_c0_g1:3020	si_s97	TRINITY_DN10061_c0_g1	3009	3029	3020	-36.30	-25.28	0.696418732782369	8	1-10,3029-3020;14-20,3016-3010	11-13,3019-3017[SIL];21-21,3009-3009[UP3]	.(((((((...((((((((((&))))))))))...))))))).	GUCCGGUCGCUAGCGAGGAAG&CUUCUUCGCUUCGGAUUGGAA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN10061_c0_g1_3020_TPlot.pdf
TRINITY_DN10061_c0_g1:3028	si_a634	TRINITY_DN10061_c0_g1	3015	3037	3028	-26.40	-17.70	0.670454545454545	9.5	2-16,3036-3022;17-19,3019-3017	1-1,3037-3037[UP5];x-x,3021-3020[BULt];20-21,3016-3015[UP3]	..(((..(((((((((((((((.&.)))))))))))))))--)))..	UCGCUAGCGAGGAAGUCGACGUU&UAUGUCGAUUUUUUUG--AGUAA	4	0.999999967983427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN10061_c0_g1_3028_TPlot.pdf
TRINITY_DN10061_c0_g1:3029	si_a633	TRINITY_DN10061_c0_g1	3016	3038	3029	-26.40	-17.70	0.670454545454545	10	3-17,3036-3022;18-20,3019-3017	1-2,3038-3037[UP5];x-x,3021-3020[BULt];21-21,3016-3016[UP3]	.(((..(((((((((((((((..&..)))))))))))))))--))).	CGCUAGCGAGGAAGUCGACGUUG&UUAUGUCGAUUUUUUUG--AGUA	4	0.99999999196975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN10061_c0_g1_3029_TPlot.pdf
TRINITY_DN10061_c0_g1:3032	si_a630	TRINITY_DN10061_c0_g1	3021	3042	3032	-25.80	-17.92	0.694573643410853	12	1-2,3042-3041;6-20,3036-3022	3-5,3040-3037[AILt];21-21,3021-3021[UP3]	.(((((((((((((((....((&))-...))))))))))))))).	GCGAGGAAGUCGACGUUGAGAC&GU-AUUAUGUCGAUUUUUUUGA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN10061_c0_g1_3032_TPlot.pdf
TRINITY_DN10065_c0_g1:47	si_s68	TRINITY_DN10065_c0_g1	36	57	47	-23.10	-15.10	0.653679653679654	11	4-8,54-50;10-21,47-36	1-3,57-55[UP5];9-9,49-48[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	GAAGAAGAAGAAGAAGAAGAAU&CAACUUCU-AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10065_c0_g1_47_TPlot.pdf
TRINITY_DN10068_c1_g1:1027	si_a633	TRINITY_DN10068_c1_g1	1016	1036	1027	-26.40	-17.20	0.651515151515151	8.5	1-7,1036-1030;10-11,1027-1026;13-21,1024-1016	8-9,1029-1028[SIL];12-12,1025-1025[SIL]	(((((((((.((..(((((((&)))))))..)).)))))))))	UACUCGAAACGAAAGACAUGA&UUAUGUCGAUUUUUUUGAGUA	4	0.99999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN10068_c1_g1_1027_TPlot.pdf
TRINITY_DN10068_c1_g1:1152	si_s611	TRINITY_DN10068_c1_g1	1141	1167	1152	-28.20	-19.00	0.673758865248227	16	1-8,1167-1160;9-19,1153-1143	x-x,1159-1154[BULt];20-21,1142-1141[UP3]	..(((((((((((......((((((((&))))))))------)))))))))))..	GAGCUUGGAUUUAUUGACAAAGAAGGU&AUCUUUUU------UAAAUCCAAGCGA	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN10068_c1_g1_1152_TPlot.pdf
TRINITY_DN10068_c1_g1:1949	si_a20	TRINITY_DN10068_c1_g1	1938	1959	1949	-26.70	-17.62	0.659925093632959	12	1-6,1959-1954;10-19,1949-1940	7-9,1953-1950[AILt];20-21,1939-1938[UP3]	..((((((((((....((((((&))))))-...))))))))))..	UUGGGCUAAAAAGUUCGUAGGC&GCCUAU-UUAUUUUUAGUUCUA	4	0.999999942932217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN10068_c1_g1_1949_TPlot.pdf
TRINITY_DN10077_c0_g1:1596	si_s64	TRINITY_DN10077_c0_g1	1585	1605	1596	-24.10	-15.80	0.655601659751037	9.5	2-11,1604-1595;13-17,1593-1589	1-1,1605-1605[UP5];12-12,1594-1594[SIL];18-21,1588-1585[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	CUCUGAGGUCGAAGUUGCUGC&UUAGCAACUUCUAUUUUUUUU	2	0.999999963498073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN10077_c0_g1_1596_TPlot.pdf
TRINITY_DN10082_c0_g1:293	si_a559	TRINITY_DN10082_c0_g1	282	302	293	-36.80	-24.20	0.657608695652174	6.5	2-10,301-293;12-17,291-286;20-21,283-282	1-1,302-302[UP5];11-11,292-292[SIL];18-19,285-284[SIL]	((..((((((.(((((((((.&.))))))))).))))))..))	CGUGUCGCGGUGAGAUAGAGU&UCUUUAUCUCCCCGUGAAUCG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN10082_c0_g1_293_TPlot.pdf
TRINITY_DN10088_c0_g2:747	si_a566	TRINITY_DN10088_c0_g2	733	756	747	-36.40	-25.84	0.70989010989011	12	1-10,756-747;12-21,742-733	11-11,746-743[AILt]	((((((((((....((((((((((&))))))))))---.))))))))))	GGAUAUGCGGCAAAUCAUGGGGAG&CUCCCCGUGA---AUCGUAUGUUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN10088_c0_g2_747_TPlot.pdf
TRINITY_DN1008_c0_g1:2531	si_a407	TRINITY_DN1008_c0_g1	2520	2539	2531	-19.80	-13.10	0.661616161616162	9.5	1-5,2539-2535;8-19,2533-2522	6-7,2534-2534[AILq];20-21,2521-2520[UP3]	..((((((((((((.-(((((&)))))..))))))))))))..	AGUUAAGUAUAAGCU-GACGA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1008_c0_g1_2531_TPlot.pdf
TRINITY_DN1008_c0_g1:2533	si_a405	TRINITY_DN1008_c0_g1	2522	2541	2533	-19.80	-14.50	0.732323232323232	8.5	2-7,2540-2535;10-21,2533-2522	1-1,2541-2541[UP5];8-9,2534-2534[AILq]	((((((((((((.-((((((.&.))))))..))))))))))))	UUAAGUAUAAGCU-GACGAUG&AAUUGUUUUGUUUAUAUUUAA	2	0.999914922680273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1008_c0_g1_2533_TPlot.pdf
TRINITY_DN1009_c0_g1:1726	si_a594	TRINITY_DN1009_c0_g1	1715	1740	1726	-32.30	-21.52	0.66625386996904	16.5	1-7,1740-1734;9-18,1727-1718	8-8,1733-1728[AILt];19-21,1717-1715[UP3]	...((((((((((......(((((((&)))))))-----.))))))))))...	UUAGCGAAGGUUCAGAUGGGUCCUUC&GAAGGAC-----AGAAUUUUCGCAAU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN1009_c0_g1_1726_TPlot.pdf
TRINITY_DN1009_c0_g1:2009	si_s423	TRINITY_DN1009_c0_g1	1998	2018	2009	-21.50	-14.40	0.669767441860465	6.5	3-13,2016-2006;16-21,2003-1998	1-2,2018-2017[UP5];14-15,2005-2004[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UGAUUACAGUUAUAUGGAACC&UAUUCUAUAUAACAAUAAUUA	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN1009_c0_g1_2009_TPlot.pdf
TRINITY_DN1009_c0_g1:2259	si_s77	TRINITY_DN1009_c0_g1	2247	2268	2259	-25.50	-20.70	0.811764705882353	6.5	3-13,2266-2256;14-21,2254-2247	1-2,2268-2267[UP5];x-x,2255-2255[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GAAGAAGGAGGAAGAAAAGAUG&UUUUUUUUCUUUC-CUUUCUUC	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1009_c0_g1_2259_TPlot.pdf
TRINITY_DN1009_c0_g1:2260	si_s76	TRINITY_DN1009_c0_g1	2248	2269	2260	-23.60	-17.70	0.75	8	4-14,2266-2256;15-21,2254-2248	1-3,2269-2267[UP5];x-x,2255-2255[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AAGAAGGAGGAAGAAAAGAUGG&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1009_c0_g1_2260_TPlot.pdf
TRINITY_DN1009_c0_g1:2261	si_s73	TRINITY_DN1009_c0_g1	2250	2270	2261	-24.00	-18.30	0.7625	5.5	1-12,2270-2259;14-21,2257-2250	13-13,2258-2258[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAAGGAGGAAGAAAAGAUGGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999999602727879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1009_c0_g1_2261_TPlot.pdf
TRINITY_DN1009_c0_g1:2262	si_s72	TRINITY_DN1009_c0_g1	2251	2271	2262	-24.10	-17.40	0.721991701244813	6	2-13,2270-2259;15-21,2257-2251	1-1,2271-2271[UP5];14-14,2258-2258[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGGAGGAAGAAAAGAUGGAU&UUCUAUUUUUUUUCUUUCCUU	3	0.99999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1009_c0_g1_2262_TPlot.pdf
TRINITY_DN1009_c0_g1:3383	si_a76	TRINITY_DN1009_c0_g1	3372	3392	3383	-21.20	-14.10	0.665094339622642	9	1-15,3392-3378	16-21,3377-3372[UP3]	......(((((((((((((((&)))))))))))))))......	CAACGAAAUGGAAAGCAGUUU&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999988442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1009_c0_g1_3383_TPlot.pdf
TRINITY_DN1009_c0_g1:3384	si_a75	TRINITY_DN1009_c0_g1	3373	3393	3384	-21.30	-14.20	0.666666666666667	9	2-16,3392-3378	1-1,3393-3393[UP5];17-21,3377-3373[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACGAAAUGGAAAGCAGUUUU&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999998782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1009_c0_g1_3384_TPlot.pdf
TRINITY_DN1009_c0_g1:3389	si_a70	TRINITY_DN1009_c0_g1	3378	3398	3389	-23.90	-18.30	0.765690376569038	4	1-5,3398-3394;7-21,3392-3378	6-6,3393-3393[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	AAUGGAAAGCAGUUUUAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1009_c0_g1_3389_TPlot.pdf
TRINITY_DN1009_c0_g1:4114	si_a769	TRINITY_DN1009_c0_g1	4103	4123	4114	-26.70	-18.50	0.692883895131086	5.5	1-17,4123-4107;19-21,4105-4103	18-18,4106-4106[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	GAGUGUUGAAUUAAUUGAAGA&UUUUUGAUUGAUUCAACUCUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN1009_c0_g1_4114_TPlot.pdf
TRINITY_DN1009_c0_g1:4282	si_s520	TRINITY_DN1009_c0_g1	4271	4290	4282	-24.00	-17.30	0.720833333333333	8	3-6,4288-4285;9-21,4283-4271	1-2,4290-4289[UP5];7-8,4284-4284[AILq]	(((((((((((((.-((((..&..))))..)))))))))))))	GGAUGAUUUCGAAG-AAGACG&AUUCUUAAUUCGAAAUCAUUU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN1009_c0_g1_4282_TPlot.pdf
TRINITY_DN1009_c0_g1:4370	si_a494	TRINITY_DN1009_c0_g1	4359	4378	4370	-29.50	-19.60	0.664406779661017	11	5-8,4374-4371;10-21,4370-4359	1-4,4378-4375[UP5];9-9,x-x[BULq]	((((((((((((-((((....&....)))).))))))))))))	GAGGGCGAAGAA-GACACUCC&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999991292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1009_c0_g1_4370_TPlot.pdf
TRINITY_DN1009_c0_g1:4539	si_a785	TRINITY_DN1009_c0_g1	4527	4549	4539	-25.90	-17.10	0.66023166023166	7.5	1-7,4549-4543;9-14,4540-4535;15-21,4533-4527	8-8,4542-4541[AILt];x-x,4534-4534[BULt]	(((((((.((((((..(((((((&)))))))-.))))))-)))))))	GGAGAUGCGAAGAAAAAGAAGAG&CUCUUCU-AUUUUUC-UAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1009_c0_g1_4539_TPlot.pdf
TRINITY_DN1009_c0_g1:4697	si_s62	TRINITY_DN1009_c0_g1	4685	4706	4697	-26.50	-17.70	0.667924528301887	9.5	1-12,4706-4695;13-14,4693-4692	x-x,4694-4694[BULt];15-21,4691-4685[UP3]	.......((.((((((((((((&))))))))))))-)).......	UAAAACGGGAAAGUUGCUAACU&AGUUAGCAACUU-CUAUUUUUU	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN1009_c0_g1_4697_TPlot.pdf
TRINITY_DN1009_c0_g1:4698	si_s61	TRINITY_DN1009_c0_g1	4686	4707	4698	-26.50	-18.00	0.679245283018868	8.5	2-13,4706-4695;14-15,4693-4692	1-1,4707-4707[UP5];x-x,4694-4694[BULt];16-21,4691-4686[UP3]	......((.((((((((((((.&.))))))))))))-))......	AAAACGGGAAAGUUGCUAACUG&AAGUUAGCAACUU-CUAUUUUU	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN1009_c0_g1_4698_TPlot.pdf
TRINITY_DN1009_c0_g1:4732	si_a636	TRINITY_DN1009_c0_g1	4721	4741	4732	-26.30	-19.80	0.752851711026616	7.5	1-15,4741-4727;17-17,4725-4725	16-16,4726-4726[SIL];18-21,4724-4721[UP3]	....(.(((((((((((((((&))))))))))))))).)....	AGGAGGUCAAAGAAGUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN1009_c0_g1_4732_TPlot.pdf
TRINITY_DN1009_c0_g1:4733	si_a635	TRINITY_DN1009_c0_g1	4722	4742	4733	-26.10	-19.80	0.758620689655172	7.5	2-16,4741-4727;18-18,4725-4725	1-1,4742-4742[UP5];17-17,4726-4726[SIL];19-21,4724-4722[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	GGAGGUCAAAGAAGUCGACAC&AUGUCGAUUUUUUUGAGUAAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1009_c0_g1_4733_TPlot.pdf
TRINITY_DN1009_c0_g1:4734	si_a634	TRINITY_DN1009_c0_g1	4723	4743	4734	-26.40	-19.80	0.75	8.5	3-17,4741-4727;19-19,4725-4725	1-2,4743-4742[UP5];18-18,4726-4726[SIL];20-21,4724-4723[UP3]	..(.(((((((((((((((..&..))))))))))))))).)..	GAGGUCAAAGAAGUCGACACU&UAUGUCGAUUUUUUUGAGUAA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1009_c0_g1_4734_TPlot.pdf
TRINITY_DN1009_c0_g1:4735	si_a633	TRINITY_DN1009_c0_g1	4724	4744	4735	-26.40	-19.80	0.75	9	4-18,4741-4727;20-20,4725-4725	1-3,4744-4742[UP5];19-19,4726-4726[SIL];21-21,4724-4724[UP3]	.(.(((((((((((((((...&...))))))))))))))).).	AGGUCAAAGAAGUCGACACUC&UUAUGUCGAUUUUUUUGAGUA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1009_c0_g1_4735_TPlot.pdf
TRINITY_DN1009_c0_g1:4736	si_a632	TRINITY_DN1009_c0_g1	4725	4745	4736	-26.10	-19.30	0.739463601532567	10	5-19,4741-4727;21-21,4725-4725	1-4,4745-4742[UP5];20-20,4726-4726[SIL]	(.(((((((((((((((....&....))))))))))))))).)	GGUCAAAGAAGUCGACACUCU&AUUAUGUCGAUUUUUUUGAGU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1009_c0_g1_4736_TPlot.pdf
TRINITY_DN1009_c0_g1:5031	si_s191	TRINITY_DN1009_c0_g1	5020	5040	5031	-26.60	-17.50	0.657894736842105	7	1-5,5040-5036;7-15,5034-5026;18-20,5023-5021	6-6,5035-5035[SIL];16-17,5025-5024[SIL];21-21,5020-5020[UP3]	.(((..(((((((((.(((((&))))).)))))))))..))).	AACAAGCCAGAAUGAGCGUUA&UAACGAUUAUUUUGGAAUGUA	2	0.989223615669991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN1009_c0_g1_5031_TPlot.pdf
TRINITY_DN1009_c0_g1:5146	si_s68	TRINITY_DN1009_c0_g1	5135	5155	5146	-23.10	-15.10	0.653679653679654	6.5	3-6,5153-5150;8-21,5148-5135	1-2,5155-5154[UP5];7-7,5149-5149[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AAAGAAGAAGAAUAAAAGUAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1009_c0_g1_5146_TPlot.pdf
TRINITY_DN1009_c0_g1:5579	si_a638	TRINITY_DN1009_c0_g1	5568	5589	5579	-24.40	-16.08	0.659016393442623	14.5	1-6,5589-5584;12-20,5577-5569	7-11,5583-5578[AILt];21-21,5568-5568[UP3]	.(((((((((......((((((&))))))-.....))))))))).	AAUGUUACUCUUAUUUGAUCGA&UCGAUU-UUUUUGAGUAAUAUA	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN1009_c0_g1_5579_TPlot.pdf
TRINITY_DN100_c0_g1:118	si_s810	TRINITY_DN100_c0_g1	107	125	118	-27.90	-18.20	0.652329749103943	9	1-5,125-121;8-17,120-111	6-7,x-x[BULq];18-21,110-107[UP3]	....((((((((((--(((((&)))))..))))))))))....	AUCAGAGAGAAGGU--CGAAG&CUUCGUUACCUUUUCUUAAUA	4	0.999999999899033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN100_c0_g1_118_TPlot.pdf
TRINITY_DN100_c0_g1:119	si_s809	TRINITY_DN100_c0_g1	108	126	119	-28.50	-19.60	0.687719298245614	8	1-6,126-121;9-18,120-111	7-8,x-x[BULq];19-21,110-108[UP3]	...((((((((((--((((((&))))))..))))))))))...	UCAGAGAGAAGGU--CGAAGA&UCUUCGUUACCUUUUCUUAAU	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN100_c0_g1_119_TPlot.pdf
TRINITY_DN10102_c0_g1:203	si_s77	TRINITY_DN10102_c0_g1	187	212	203	-25.50	-18.00	0.705882352941177	9	1-14,212-199;17-21,191-187	15-16,198-192[AILt]	(((((.......((((((((((((((&))))))))))))))-----..)))))	GAAGAUUGGUCUGGAAAGGAAAAAGA&UUUUUUUUCUUUCC-----UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10102_c0_g1_203_TPlot.pdf
TRINITY_DN10102_c0_g1:512	si_a474	TRINITY_DN10102_c0_g1	501	521	512	-23.60	-15.60	0.661016949152542	4	1-3,521-519;5-21,517-501	4-4,518-518[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	UUUGUAUAAUAAUAAUUUCAU&AUGUAAUUAUUGUUAUAUAGA	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN10102_c0_g1_512_TPlot.pdf
TRINITY_DN10107_c0_g1:1570	si_s485	TRINITY_DN10107_c0_g1	1559	1579	1570	-18.10	-12.40	0.685082872928177	4.5	2-13,1578-1567;16-21,1564-1559	1-1,1579-1579[UP5];14-15,1566-1565[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UUUGUAGAUAAAUAAAUGUAU&CUAUAUUUAUUUAAAUAUAAA	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN10107_c0_g1_1570_TPlot.pdf
TRINITY_DN10115_c0_g1:16	si_a401	TRINITY_DN10115_c0_g1	5	24	16	-22.60	-15.40	0.68141592920354	5.5	1-4,24-21;7-21,19-5	5-6,20-20[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	AUAUAAAUAAAACGAG-CUAU&AUAGAAUUGUUUUGUUUAUAU	3	0.999999791918167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN10115_c0_g1_16_TPlot.pdf
TRINITY_DN10115_c0_g1:219	si_s77	TRINITY_DN10115_c0_g1	205	228	219	-25.50	-17.10	0.670588235294118	7	1-15,228-214;16-18,210-208;20-21,206-205	x-x,213-211[BULt];19-19,207-207[SIL]	((.(((...(((((((((((((((&)))))))))))))))---))).))	GACGAGUACGGGAAAGAAAAGGAA&UUUUUUUUCUUUCCU---UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10115_c0_g1_219_TPlot.pdf
TRINITY_DN10115_c0_g1:220	si_s76	TRINITY_DN10115_c0_g1	208	229	220	-23.60	-16.80	0.711864406779661	7	2-16,228-214;19-21,210-208	1-1,229-229[UP5];17-18,213-211[AILt]	(((...(((((((((((((((.&.)))))))))))))))-..)))	GAGUACGGGAAAGAAAAGGAAA&AUUUUUUUUCUUUCCU-UUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10115_c0_g1_220_TPlot.pdf
TRINITY_DN10115_c0_g1:221	si_s75	TRINITY_DN10115_c0_g1	207	230	221	-24.00	-16.50	0.6875	10	3-17,228-214;18-20,210-208	1-2,230-229[UP5];x-x,213-211[BULt];21-21,207-207[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	CGAGUACGGGAAAGAAAAGGAAAC&UAUUUUUUUUCUUUCCU---UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10115_c0_g1_221_TPlot.pdf
TRINITY_DN10115_c0_g1:89	si_s73	TRINITY_DN10115_c0_g1	70	98	89	-24.00	-17.70	0.7375	9	1-15,98-84;16-21,75-70	x-x,83-76[BULt]	((((((........(((((((((((((((&)))))))))))))))--------))))))	AGGGGAAAACGCCCAAGAAAAAAAAUAGA&UCUAUUUUUUUUCUU--------UCCUUU	3	0.999999999888394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10115_c0_g1_89_TPlot.pdf
TRINITY_DN10115_c0_g1:90	si_s72	TRINITY_DN10115_c0_g1	71	99	90	-24.10	-17.60	0.730290456431535	9	1-16,99-84;17-21,75-71	x-x,83-76[BULt]	(((((........((((((((((((((((&))))))))))))))))--------)))))	GGGGAAAACGCCCAAGAAAAAAAAUAGAA&UUCUAUUUUUUUUCUU--------UCCUU	2	0.99999990363292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10115_c0_g1_90_TPlot.pdf
TRINITY_DN10115_c0_g1:91	si_s71	TRINITY_DN10115_c0_g1	72	100	91	-25.70	-17.50	0.680933852140078	9.5	2-17,99-84;18-21,75-72	1-1,100-100[UP5];x-x,83-76[BULt]	((((........((((((((((((((((.&.))))))))))))))))--------))))	GGGAAAACGCCCAAGAAAAAAAAUAGAAU&CUUCUAUUUUUUUUCUU--------UCCU	2	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10115_c0_g1_91_TPlot.pdf
TRINITY_DN10115_c0_g1:93	si_s69	TRINITY_DN10115_c0_g1	82	102	93	-23.40	-15.80	0.675213675213675	7	4-19,99-84	1-3,102-100[UP5];20-21,83-82[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCAAGAAAAAAAAUAGAAUUU&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10115_c0_g1_93_TPlot.pdf
TRINITY_DN10115_c0_g1:94	si_s68	TRINITY_DN10115_c0_g1	83	103	94	-23.10	-15.80	0.683982683982684	8	5-20,99-84	1-4,103-100[UP5];21-21,83-83[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAGAAAAAAAAUAGAAUUUU&CAACUUCUAUUUUUUUUCUUU	0	0.581683697863149	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10115_c0_g1_94_TPlot.pdf
TRINITY_DN10119_c0_g2:2214	si_s536	TRINITY_DN10119_c0_g2	2204	2224	2214	-27.70	-18.30	0.660649819494585	5	1-8,2224-2217;9-12,2215-2212;14-20,2211-2205	x-x,2216-2216[BULt];13-13,x-x[BULq];21-21,2204-2204[UP3]	.(((((((-((((.((((((((&))))))))-)))).))))))).	UUUUUGAU-GGAUACAAAGAUG&CAUUUUUG-AUCCGAUCAAAAU	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN10119_c0_g2_2214_TPlot.pdf
TRINITY_DN1011_c0_g1:2752	si_a445	TRINITY_DN1011_c0_g1	2741	2761	2752	-27.30	-18.10	0.663003663003663	6	1-17,2761-2745	18-21,2744-2741[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACAAAACAAUUAUUUUAUAUC&GAUAUGAGAUAAUUGUUGUUA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN1011_c0_g1_2752_TPlot.pdf
TRINITY_DN1011_c0_g1:631	si_a784	TRINITY_DN1011_c0_g1	620	640	631	-24.70	-17.20	0.696356275303644	10.5	3-16,638-625	1-2,640-639[UP5];17-21,624-620[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGAAAAGAGAGAUGGAAGAAA&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999823709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1011_c0_g1_631_TPlot.pdf
TRINITY_DN1011_c0_g1:632	si_a783	TRINITY_DN1011_c0_g1	621	641	632	-24.70	-17.20	0.696356275303644	11.5	4-17,638-625	1-3,641-639[UP5];18-21,624-621[UP3]	....((((((((((((((...&...))))))))))))))....	GAAAAGAGAGAUGGAAGAAAA&AACUCUUCUAUUUUUCUAUUU	2	0.999993114357665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1011_c0_g1_632_TPlot.pdf
TRINITY_DN10121_c0_g1:410	si_s321	TRINITY_DN10121_c0_g1	399	419	410	-31.00	-20.20	0.651612903225806	7	1-3,419-417;6-13,414-407;15-20,405-400	4-5,416-415[SIL];14-14,406-406[SIL];21-21,399-399[UP3]	.((((((.((((((((..(((&)))..)))))))).)))))).	AUAUGUUAGUAACAGGUUGGA&UCCUUCUUGUUACAAACAUAC	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN10121_c0_g1_410_TPlot.pdf
TRINITY_DN10122_c0_g1:126	si_a233	TRINITY_DN10122_c0_g1	114	134	126	-28.90	-18.90	0.653979238754325	9	1-7,134-128;10-11,126-125;14-21,121-114	8-9,127-127[AILq];12-13,124-122[AILt]	((((((((...((.-(((((((&)))))))..))-..))))))))	GGAUCGAAGCGGAG-AUAGAAA&UUUCUAUAAUC-AAUUCGAUCC	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN10122_c0_g1_126_TPlot.pdf
TRINITY_DN10123_c0_g1:1761	si_s493	TRINITY_DN10123_c0_g1	1750	1771	1761	-19.80	-13.70	0.691919191919192	9	4-8,1768-1764;9-20,1762-1751	1-3,1771-1769[UP5];x-x,1763-1763[BULt];21-21,1750-1750[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	AUGUUUUGUUUAUAGUUUAUAU&AUUUAAAU-AUAAACAAAACAA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN10123_c0_g1_1761_TPlot.pdf
TRINITY_DN10123_c0_g1:1766	si_s489	TRINITY_DN10123_c0_g1	1754	1775	1766	-17.90	-12.00	0.670391061452514	6	1-6,1775-1770;8-12,1768-1764;13-21,1762-1754	7-7,1769-1769[SIL];x-x,1763-1763[BULt]	(((((((((.(((((.((((((&)))))).)))))-)))))))))	UUUGUUUAUAGUUUAUAUGAAU&AUUUAUUUAAAU-AUAAACAAA	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN10123_c0_g1_1766_TPlot.pdf
TRINITY_DN10125_c1_g1:208	si_s70	TRINITY_DN10125_c1_g1	197	217	208	-25.80	-18.00	0.697674418604651	8	1-17,217-201	18-21,200-197[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAGUAGAAAGGAAAUGGGAGU&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999999763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10125_c1_g1_208_TPlot.pdf
TRINITY_DN10125_c1_g1:209	si_s69	TRINITY_DN10125_c1_g1	198	218	209	-23.40	-18.30	0.782051282051282	7.5	2-18,217-201	1-1,218-218[UP5];19-21,200-198[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AGUAGAAAGGAAAUGGGAGUG&AACUUCUAUUUUUUUUCUUUC	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10125_c1_g1_209_TPlot.pdf
TRINITY_DN10125_c1_g1:211	si_s67	TRINITY_DN10125_c1_g1	200	219	211	-25.60	-20.80	0.8125	6	1-3,219-217;5-20,216-201	4-4,x-x[BULq];21-21,200-200[UP3]	.((((((((((((((((-(((&))).)))))))))))))))).	UAGAAAGGAAAUGGGAG-UGC&GCAACUUCUAUUUUUUUUCUU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN10125_c1_g1_211_TPlot.pdf
TRINITY_DN10126_c0_g1:45	si_a883	TRINITY_DN10126_c0_g1	34	54	45	-27.20	-18.10	0.665441176470588	6.5	2-8,53-47;11-21,44-34	1-1,54-54[UP5];9-10,46-45[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	UAUUACUGUGUAUAUUGCAAA&GUUGCAAUCAAUAUAGUAAUA	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN10126_c0_g1_45_TPlot.pdf
TRINITY_DN10128_c0_g1:725	si_s84	TRINITY_DN10128_c0_g1	714	734	725	-32.30	-22.30	0.690402476780186	7	1-7,734-728;10-13,725-722;15-21,720-714	8-9,727-726[SIL];14-14,721-721[SIL]	(((((((.((((..(((((((&)))))))..)))).)))))))	CGAAGAAUAGGACUGGAAGGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999999999999679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10128_c0_g1_725_TPlot.pdf
TRINITY_DN10128_c0_g1:732	si_a20	TRINITY_DN10128_c0_g1	721	743	732	-26.70	-18.20	0.681647940074906	8.5	1-4,743-740;5-8,737-734;10-21,732-721	x-x,739-738[BULt];9-9,733-733[SIL]	((((((((((((.((((..((((&))))--)))).))))))))))))	UAGGACUGGAAGGAAAUCAAGGC&GCCU--AUUUAUUUUUAGUUCUA	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN10128_c0_g1_732_TPlot.pdf
TRINITY_DN10128_c0_g1:741	si_a316	TRINITY_DN10128_c0_g1	730	751	741	-26.30	-19.40	0.737642585551331	7	1-8,751-744;9-10,742-741;12-21,739-730	x-x,743-743[BULt];11-11,740-740[SIL]	((((((((((.((.((((((((&))))))))-)).))))))))))	AAGGAAAUCAAGGCGUAGAUCC&GGAUUUAU-CCAUGAUUUUUUU	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN10128_c0_g1_741_TPlot.pdf
TRINITY_DN10128_c0_g1:742	si_a315	TRINITY_DN10128_c0_g1	731	752	742	-27.00	-19.50	0.722222222222222	7	1-9,752-744;10-11,742-741;13-21,739-731	x-x,743-743[BULt];12-12,740-740[SIL]	(((((((((.((.(((((((((&)))))))))-)).)))))))))	AGGAAAUCAAGGCGUAGAUCCA&UGGAUUUAU-CCAUGAUUUUUU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN10128_c0_g1_742_TPlot.pdf
TRINITY_DN10128_c0_g1:744	si_a314	TRINITY_DN10128_c0_g1	732	753	744	-27.10	-19.40	0.715867158671587	6	1-10,753-744;11-12,742-741;14-21,739-732	x-x,743-743[BULt];13-13,740-740[SIL]	((((((((.((.((((((((((&))))))))))-)).))))))))	GGAAAUCAAGGCGUAGAUCCAA&UUGGAUUUAU-CCAUGAUUUUU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN10128_c0_g1_744_TPlot.pdf
TRINITY_DN10128_c0_g1:745	si_a313	TRINITY_DN10128_c0_g1	733	754	745	-28.70	-19.30	0.672473867595819	6.5	2-11,753-744;12-13,742-741;15-21,739-733	1-1,754-754[UP5];x-x,743-743[BULt];14-14,740-740[SIL]	(((((((.((.((((((((((.&.))))))))))-)).)))))))	GAAAUCAAGGCGUAGAUCCAAU&CUUGGAUUUAU-CCAUGAUUUU	3	0.999756459400394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN10128_c0_g1_745_TPlot.pdf
TRINITY_DN10128_c0_g1:751	si_s45	TRINITY_DN10128_c0_g1	741	760	751	-24.70	-16.10	0.651821862348178	5.5	1-15,760-746;19-21,743-741	16-18,745-744[AILq]	(((..-(((((((((((((((&)))))))))))))))...)))	GGCGU-AGAUCCAAUUAUUGA&UUAAUAAUUGGAUUUCAAGUU	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN10128_c0_g1_751_TPlot.pdf
TRINITY_DN10128_c0_g1:755	si_s41	TRINITY_DN10128_c0_g1	743	768	755	-25.00	-16.30	0.652	11.5	1-4,768-765;5-19,760-746;20-20,744-744	x-x,764-761[BULt];x-x,745-745[BULt];21-21,743-743[UP3]	.(.(((((((((((((((....((((&))))----)))))))))))))))-).	CGUAGAUCCAAUUAUUGAUGUCAGAU&AUCU----UUAAUAAUUGGAUUU-CA	2	0.995866999552873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN10128_c0_g1_755_TPlot.pdf
TRINITY_DN10128_c0_g1:756	si_s40	TRINITY_DN10128_c0_g1	745	769	756	-24.30	-16.40	0.674897119341564	11.5	2-5,768-765;6-20,760-746	1-1,769-769[UP5];x-x,764-761[BULt];21-21,745-745[UP3]	.(((((((((((((((....((((.&.))))----))))))))))))))).	UAGAUCCAAUUAUUGAUGUCAGAUC&AAUCU----UUAAUAAUUGGAUUUC	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN10128_c0_g1_756_TPlot.pdf
TRINITY_DN10128_c0_g1:757	si_s39	TRINITY_DN10128_c0_g1	746	770	757	-22.30	-16.40	0.73542600896861	12.5	3-6,768-765;7-21,760-746	1-2,770-769[UP5];x-x,764-761[BULt]	(((((((((((((((....((((..&..))))----)))))))))))))))	AGAUCCAAUUAUUGAUGUCAGAUCU&AAAUCU----UUAAUAAUUGGAUUU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN10128_c0_g1_757_TPlot.pdf
TRINITY_DN10128_c0_g1:758	si_s38	TRINITY_DN10128_c0_g1	747	771	758	-22.70	-15.80	0.696035242290749	14.5	4-7,768-765;8-21,760-747	1-3,771-769[UP5];x-x,764-761[BULt]	((((((((((((((....((((...&...))))----))))))))))))))	GAUCCAAUUAUUGAUGUCAGAUCUG&UAAAUCU----UUAAUAAUUGGAUU	2	0.918052453677541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN10128_c0_g1_758_TPlot.pdf
TRINITY_DN10128_c0_g1:759	si_s37	TRINITY_DN10128_c0_g1	748	772	759	-24.40	-16.40	0.672131147540984	12	1-3,772-770;5-8,768-765;9-21,760-748	4-4,769-769[SIL];x-x,764-761[BULt]	(((((((((((((....((((.(((&))).))))----)))))))))))))	AUCCAAUUAUUGAUGUCAGAUCUGG&CUAAAUCU----UUAAUAAUUGGAU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN10128_c0_g1_759_TPlot.pdf
TRINITY_DN10129_c0_g1:1691	si_a593	TRINITY_DN10129_c0_g1	1683	1700	1691	-32.90	-23.70	0.720364741641337	5	1-11,1700-1690;15-21,1689-1683	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	UUGUGAG---UCUGUCCUUCU&AGAAGGACAGAAUUUUCGCAA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN10129_c0_g1_1691_TPlot.pdf
TRINITY_DN10129_c0_g1:1700	si_a584	TRINITY_DN10129_c0_g1	1689	1709	1700	-31.50	-22.80	0.723809523809524	14	8-20,1702-1690	1-7,1709-1703[UP5];21-21,1689-1689[UP3]	.(((((((((((((.......&.......))))))))))))).	GUCUGUCCUUCUUGGGUGUGG&UUUGUAACAAGAAGGACAGAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a584_TRINITY_DN10129_c0_g1_1700_TPlot.pdf
TRINITY_DN10129_c0_g1:2439	si_a836	TRINITY_DN10129_c0_g1	2428	2448	2439	-24.10	-15.80	0.655601659751037	18.5	9-19,2440-2430	1-8,2448-2441[UP5];20-21,2429-2428[UP3]	..(((((((((((........&........)))))))))))..	CGAGCAGCUUCUGCCGGUGGC&AAAAAAAAUAGAAGUUGCUAA	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN10129_c0_g1_2439_TPlot.pdf
TRINITY_DN10129_c0_g1:2546	si_a764	TRINITY_DN10129_c0_g1	2535	2555	2546	-28.90	-18.80	0.650519031141869	7.5	1-10,2555-2546;13-16,2543-2540;18-21,2538-2535	11-12,2545-2544[SIL];17-17,2539-2539[SIL]	((((.((((..((((((((((&))))))))))..)))).))))	UUGACUCGAAGAAGAACCCGA&UUGGGUUUUUGAUUGAUUCAA	3	0.999999999680214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN10129_c0_g1_2546_TPlot.pdf
TRINITY_DN10129_c0_g1:2967	si_s96	TRINITY_DN10129_c0_g1	2956	2977	2967	-37.20	-24.30	0.653225806451613	7.5	1-9,2977-2969;10-18,2967-2959;20-20,2957-2957	x-x,2968-2968[BULt];19-19,2958-2958[SIL];21-21,2956-2956[UP3]	.(.(((((((((.(((((((((&)))))))))-))))))))).).	CCGGAUUUGAAGUCGGAGGAGA&UCUUCUUCG-CUUCGGAUUGGA	4	0.999985874321336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN10129_c0_g1_2967_TPlot.pdf
TRINITY_DN1012_c0_g1:1770	si_a406	TRINITY_DN1012_c0_g1	1756	1779	1770	-19.80	-14.10	0.712121212121212	12.5	3-10,1777-1770;11-21,1766-1756	1-2,1779-1778[UP5];x-x,1769-1767[BULt]	(((((((((((...((((((((..&..))))))))---)))))))))))	UUUAAAUGUAACAGGCAAGGCAGA&AUUGUUUUGU---UUAUAUUUAAA	4	0.999999997672781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1012_c0_g1_1770_TPlot.pdf
TRINITY_DN10134_c1_g2:92	si_s476	TRINITY_DN10134_c1_g2	81	101	92	-28.40	-19.50	0.686619718309859	11	1-11,101-91	12-21,90-81[UP3]	..........(((((((((((&)))))))))))..........	ACGAAUUUGCAGGAUCCGUUG&CAACGGAUCCUAUAUUUAUUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN10134_c1_g2_92_TPlot.pdf
TRINITY_DN1013_c0_g1:1062	si_a126	TRINITY_DN1013_c0_g1	1049	1071	1062	-24.70	-17.20	0.696356275303644	4.5	1-5,1071-1067;7-14,1065-1058;15-21,1055-1049	6-6,1066-1066[SIL];x-x,1057-1056[BULt]	(((((((..((((((((.(((((&))))).))))))))--)))))))	UGAUUACAUUAUUGCUAAAAAAC&GUUUUAUAGCAAUA--GUAAUUA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN1013_c0_g1_1062_TPlot.pdf
TRINITY_DN1013_c0_g1:1063	si_a125	TRINITY_DN1013_c0_g1	1050	1072	1063	-25.00	-16.80	0.672	4.5	1-6,1072-1067;8-15,1065-1058;16-21,1055-1050	7-7,1066-1066[SIL];x-x,1057-1056[BULt]	((((((..((((((((.((((((&)))))).))))))))--))))))	GAUUACAUUAUUGCUAAAAAACA&UGUUUUAUAGCAAUA--GUAAUU	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN1013_c0_g1_1063_TPlot.pdf
TRINITY_DN10143_c0_g1:194	si_a767	TRINITY_DN10143_c0_g1	181	203	194	-30.10	-20.20	0.67109634551495	8	1-12,203-192;13-19,189-183	x-x,191-190[BULt];20-21,182-181[UP3]	..(((((((..((((((((((((&))))))))))))--)))))))..	GCGUUGAAUUGCAAUCAAAGAUC&GGUUUUUGAUUG--AUUCAACUC	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN10143_c0_g1_194_TPlot.pdf
TRINITY_DN10143_c0_g1:195	si_a766	TRINITY_DN10143_c0_g1	182	204	195	-30.50	-20.20	0.662295081967213	6	2-13,203-192;14-20,189-183	1-1,204-204[UP5];x-x,191-190[BULt];21-21,182-182[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	CGUUGAAUUGCAAUCAAAGAUCA&GGGUUUUUGAUUG--AUUCAACU	0	0.158948826875126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN10143_c0_g1_195_TPlot.pdf
TRINITY_DN10143_c0_g2:805	si_a766	TRINITY_DN10143_c0_g2	792	814	805	-30.50	-20.20	0.662295081967213	6	2-13,813-802;14-20,799-793	1-1,814-814[UP5];x-x,801-800[BULt];21-21,792-792[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	CGUUGAAUUGCAAUCAAAGAUCA&GGGUUUUUGAUUG--AUUCAACU	0	0.154730529612847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN10143_c0_g2_805_TPlot.pdf
TRINITY_DN1014_c0_g1:1154	si_s516	TRINITY_DN1014_c0_g1	1142	1163	1154	-25.80	-17.30	0.670542635658915	10	1-10,1163-1154;13-17,1150-1146;19-21,1144-1142	11-12,1153-1151[AILt];18-18,1145-1145[SIL]	(((.(((((...((((((((((&))))))))))-..))))).)))	GAUAUCGAAAGGGAGGAUGUAG&CUAUAUUCUU-AAUUCGAAAUC	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN1014_c0_g1_1154_TPlot.pdf
TRINITY_DN1014_c0_g1:1155	si_s515	TRINITY_DN1014_c0_g1	1143	1164	1155	-24.80	-16.60	0.669354838709677	11	1-11,1164-1154;14-18,1150-1146	12-13,1153-1151[AILt];19-21,1145-1143[UP3]	...(((((...(((((((((((&)))))))))))-..)))))...	AUAUCGAAAGGGAGGAUGUAGA&UCUAUAUUCUU-AAUUCGAAAU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN1014_c0_g1_1155_TPlot.pdf
TRINITY_DN1014_c0_g1:1158	si_s512	TRINITY_DN1014_c0_g1	1146	1167	1158	-24.80	-19.00	0.766129032258065	5.5	1-14,1167-1154;17-21,1150-1146	15-16,1153-1151[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	UCGAAAGGGAGGAUGUAGAAUU&AAUUCUAUAUUCUU-AAUUCGA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN1014_c0_g1_1158_TPlot.pdf
TRINITY_DN1014_c0_g1:1159	si_s511	TRINITY_DN1014_c0_g1	1147	1168	1159	-25.50	-17.10	0.670588235294118	6.5	2-15,1167-1154;18-21,1150-1147	1-1,1168-1168[UP5];16-17,1153-1151[AILt]	((((...((((((((((((((.&.))))))))))))))-..))))	CGAAAGGGAGGAUGUAGAAUUU&CAAUUCUAUAUUCUU-AAUUCG	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN1014_c0_g1_1159_TPlot.pdf
TRINITY_DN1014_c0_g1:1161	si_s509	TRINITY_DN1014_c0_g1	1150	1171	1161	-22.80	-15.90	0.697368421052632	9	2-5,1170-1167;6-17,1165-1154	1-1,1171-1171[UP5];x-x,1166-1166[BULt];18-21,1153-1150[UP3]	....((((((((((((.((((.&.))))-))))))))))))....	AAGGGAGGAUGUAGAAUUUGUA&AACAA-UUCUAUAUUCUUAAUU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN1014_c0_g1_1161_TPlot.pdf
TRINITY_DN1014_c0_g1:1162	si_s508	TRINITY_DN1014_c0_g1	1151	1172	1162	-22.80	-15.90	0.697368421052632	10	3-6,1170-1167;7-18,1165-1154	1-2,1172-1171[UP5];x-x,1166-1166[BULt];19-21,1153-1151[UP3]	...((((((((((((.((((..&..))))-))))))))))))...	AGGGAGGAUGUAGAAUUUGUAU&AAACAA-UUCUAUAUUCUUAAU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN1014_c0_g1_1162_TPlot.pdf
TRINITY_DN1014_c0_g1:1163	si_s507	TRINITY_DN1014_c0_g1	1152	1173	1163	-22.70	-15.90	0.700440528634361	10.5	4-7,1170-1167;8-19,1165-1154	1-3,1173-1171[UP5];x-x,1166-1166[BULt];20-21,1153-1152[UP3]	..((((((((((((.((((...&...))))-))))))))))))..	GGGAGGAUGUAGAAUUUGUAUG&AAAACAA-UUCUAUAUUCUUAA	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN1014_c0_g1_1163_TPlot.pdf
TRINITY_DN1014_c0_g1:1164	si_s506	TRINITY_DN1014_c0_g1	1153	1174	1164	-24.30	-15.90	0.654320987654321	11.5	5-8,1170-1167;9-20,1165-1154	1-4,1174-1171[UP5];x-x,1166-1166[BULt];21-21,1153-1153[UP3]	.((((((((((((.((((....&....))))-)))))))))))).	GGAGGAUGUAGAAUUUGUAUGU&CAAAACAA-UUCUAUAUUCUUA	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN1014_c0_g1_1164_TPlot.pdf
TRINITY_DN1014_c0_g1:1190	si_a539	TRINITY_DN1014_c0_g1	1179	1201	1190	-32.70	-21.78	0.66605504587156	12.5	2-9,1200-1193;12-18,1188-1182	1-1,1201-1201[UP5];10-11,1192-1189[AILt];19-21,1181-1179[UP3]	...(((((((....((((((((.&.))))))))--..)))))))...	CUCUAGGUUGUCGUCCGAUCGCC&AGCGAUCGG--UUCAAUCUAUUU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN1014_c0_g1_1190_TPlot.pdf
TRINITY_DN1014_c0_g1:1548	si_s642	TRINITY_DN1014_c0_g1	1537	1557	1548	-38.60	-26.30	0.681347150259067	11	1-5,1557-1553;8-14,1550-1544	6-7,1552-1551[SIL];15-21,1543-1537[UP3]	.......(((((((..(((((&)))))..))))))).......	AUCUGCACGAGGGCUUACGCC&GGCGUUUGCCCUCGAUACAAU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN1014_c0_g1_1548_TPlot.pdf
TRINITY_DN1014_c0_g1:1549	si_s641	TRINITY_DN1014_c0_g1	1538	1558	1549	-39.20	-26.40	0.673469387755102	11	2-6,1557-1553;9-15,1550-1544	1-1,1558-1558[UP5];7-8,1552-1551[SIL];16-21,1543-1538[UP3]	......(((((((..(((((.&.)))))..)))))))......	UCUGCACGAGGGCUUACGCCA&AGGCGUUUGCCCUCGAUACAA	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN1014_c0_g1_1549_TPlot.pdf
TRINITY_DN1014_c0_g1:1550	si_s640	TRINITY_DN1014_c0_g1	1539	1559	1550	-39.50	-26.40	0.668354430379747	12	3-7,1557-1553;10-16,1550-1544	1-2,1559-1558[UP5];8-9,1552-1551[SIL];17-21,1543-1539[UP3]	.....(((((((..(((((..&..)))))..))))))).....	CUGCACGAGGGCUUACGCCAA&UAGGCGUUUGCCCUCGAUACA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s640_TRINITY_DN1014_c0_g1_1550_TPlot.pdf
TRINITY_DN1014_c0_g1:1551	si_s639	TRINITY_DN1014_c0_g1	1540	1560	1551	-40.60	-27.30	0.672413793103448	10	1-2,1560-1559;4-8,1557-1553;11-17,1550-1544	3-3,1558-1558[SIL];9-10,1552-1551[SIL];18-21,1543-1540[UP3]	....(((((((..(((((.((&)).)))))..)))))))....	UGCACGAGGGCUUACGCCAAC&GUAGGCGUUUGCCCUCGAUAC	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN1014_c0_g1_1551_TPlot.pdf
TRINITY_DN1014_c0_g1:1552	si_s638	TRINITY_DN1014_c0_g1	1541	1561	1552	-40.30	-28.80	0.714640198511166	9	1-3,1561-1559;5-9,1557-1553;12-18,1550-1544	4-4,1558-1558[SIL];10-11,1552-1551[SIL];19-21,1543-1541[UP3]	...(((((((..(((((.(((&))).)))))..)))))))...	GCACGAGGGCUUACGCCAACG&CGUAGGCGUUUGCCCUCGAUA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN1014_c0_g1_1552_TPlot.pdf
TRINITY_DN1014_c0_g1:1553	si_s637	TRINITY_DN1014_c0_g1	1542	1562	1553	-40.90	-28.80	0.704156479217604	9	2-4,1561-1559;6-10,1557-1553;13-19,1550-1544	1-1,1562-1562[UP5];5-5,1558-1558[SIL];11-12,1552-1551[SIL];20-21,1543-1542[UP3]	..(((((((..(((((.(((.&.))).)))))..)))))))..	CACGAGGGCUUACGCCAACGC&UCGUAGGCGUUUGCCCUCGAU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN1014_c0_g1_1553_TPlot.pdf
TRINITY_DN1014_c0_g1:1554	si_s636	TRINITY_DN1014_c0_g1	1543	1563	1554	-40.80	-28.80	0.705882352941177	9	3-5,1561-1559;7-11,1557-1553;14-20,1550-1544	1-2,1563-1562[UP5];6-6,1558-1558[SIL];12-13,1552-1551[SIL];21-21,1543-1543[UP3]	.(((((((..(((((.(((..&..))).)))))..))))))).	ACGAGGGCUUACGCCAACGCU&UUCGUAGGCGUUUGCCCUCGA	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN1014_c0_g1_1554_TPlot.pdf
TRINITY_DN1014_c0_g1:1555	si_s635	TRINITY_DN1014_c0_g1	1544	1564	1555	-39.80	-28.80	0.723618090452261	9	4-6,1561-1559;8-12,1557-1553;15-21,1550-1544	1-3,1564-1562[UP5];7-7,1558-1558[SIL];13-14,1552-1551[SIL]	(((((((..(((((.(((...&...))).)))))..)))))))	CGAGGGCUUACGCCAACGCUU&UUUCGUAGGCGUUUGCCCUCG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN1014_c0_g1_1555_TPlot.pdf
TRINITY_DN1014_c0_g1:1556	si_s634	TRINITY_DN1014_c0_g1	1545	1565	1556	-38.30	-26.40	0.689295039164491	11	5-7,1561-1559;9-13,1557-1553;16-21,1550-1545	1-4,1565-1562[UP5];8-8,1558-1558[SIL];14-15,1552-1551[SIL]	((((((..(((((.(((....&....))).)))))..))))))	GAGGGCUUACGCCAACGCUUU&UUUUCGUAGGCGUUUGCCCUC	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN1014_c0_g1_1556_TPlot.pdf
TRINITY_DN1014_c0_g1:179	si_a725	TRINITY_DN1014_c0_g1	168	188	179	-38.10	-25.30	0.664041994750656	12	6-8,183-181;10-21,179-168	1-5,188-184[UP5];9-9,180-180[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GGUGGAGAUGCCAGAGGAAGA&CGUUACUCGGGCAUCUUUACC	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN1014_c0_g1_179_TPlot.pdf
TRINITY_DN1014_c0_g1:1861	si_s353	TRINITY_DN1014_c0_g1	1850	1874	1861	-26.90	-17.96	0.667657992565056	13	1-8,1874-1867;11-21,1860-1850	9-10,1866-1861[AILt]	(((((((((((......((((((((&))))))))----..)))))))))))	GUUCGAUUUAUGUUUAGCUUUAUCU&AGAUAAAG----AAAUAGAUUGAAC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN1014_c0_g1_1861_TPlot.pdf
TRINITY_DN1014_c0_g1:411	si_a766	TRINITY_DN1014_c0_g1	401	420	411	-30.50	-21.70	0.711475409836065	7.5	1-11,420-410;13-21,409-401	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GGUUGAGUU-AUCAAGGGCUC&GGGUUUUUGAUUGAUUCAACU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN1014_c0_g1_411_TPlot.pdf
TRINITY_DN1014_c0_g1:799	si_a70	TRINITY_DN1014_c0_g1	787	808	799	-23.90	-15.60	0.652719665271967	6.5	1-6,808-803;8-15,801-794;17-21,791-787	7-7,802-802[SIL];16-16,793-792[AILt]	(((((..((((((((.((((((&)))))).))))))))-.)))))	AGUGAUCAAACAAUUAGGAGGA&UCUUUCAAAUUGUUU-UUCAUU	3	0.999999999999953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1014_c0_g1_799_TPlot.pdf
TRINITY_DN10153_c0_g4:855	si_a20	TRINITY_DN10153_c0_g4	844	866	855	-26.70	-18.34	0.68689138576779	15	1-5,866-862;10-20,855-845	6-9,861-856[AILt];21-21,844-844[UP3]	.(((((((((((......(((((&)))))--....))))))))))).	AAGAGCUAGAGAAGCUCUUAGGC&GCCUA--UUUAUUUUUAGUUCUA	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN10153_c0_g4_855_TPlot.pdf
TRINITY_DN10153_c1_g1:1739	si_s722	TRINITY_DN10153_c1_g1	1727	1748	1739	-32.90	-21.70	0.659574468085106	5.5	1-12,1748-1737;13-16,1735-1732;18-21,1730-1727	x-x,1736-1736[BULt];17-17,1731-1731[SIL]	((((.((((.((((((((((((&))))))))))))-)))).))))	CUGUGUGGGUUAAUAUUUUUCC&GGAAAGAUAUUA-UCUAGACGG	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s722_TRINITY_DN10153_c1_g1_1739_TPlot.pdf
TRINITY_DN10155_c0_g2:1667	si_a467	TRINITY_DN10155_c0_g2	1656	1676	1667	-21.10	-14.00	0.663507109004739	7.5	2-16,1675-1661	1-1,1676-1676[UP5];17-21,1660-1656[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUAUUGAUUACAUAUUAUGG&AUAUAAUAUGUAAUUAUUGUU	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN10155_c0_g2_1667_TPlot.pdf
TRINITY_DN10155_c0_g2:1668	si_a466	TRINITY_DN10155_c0_g2	1657	1677	1668	-21.50	-14.00	0.651162790697674	8.5	3-17,1675-1661	1-2,1677-1676[UP5];18-21,1660-1657[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUAUUGAUUACAUAUUAUGGA&UAUAUAAUAUGUAAUUAUUGU	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN10155_c0_g2_1668_TPlot.pdf
TRINITY_DN10155_c0_g2:1669	si_a465	TRINITY_DN10155_c0_g2	1658	1678	1669	-20.90	-14.00	0.669856459330144	9.5	4-18,1675-1661	1-3,1678-1676[UP5];19-21,1660-1658[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAUUGAUUACAUAUUAUGGAC&AUAUAUAAUAUGUAAUUAUUG	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN10155_c0_g2_1669_TPlot.pdf
TRINITY_DN10155_c0_g2:1670	si_a464	TRINITY_DN10155_c0_g2	1659	1679	1670	-19.60	-14.00	0.714285714285714	10.5	5-19,1675-1661	1-4,1679-1676[UP5];20-21,1660-1659[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUUGAUUACAUAUUAUGGACA&UAUAUAUAAUAUGUAAUUAUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN10155_c0_g2_1670_TPlot.pdf
TRINITY_DN10155_c0_g2:1671	si_a463	TRINITY_DN10155_c0_g2	1660	1680	1671	-19.70	-14.00	0.710659898477157	11.5	6-20,1675-1661	1-5,1680-1676[UP5];21-21,1660-1660[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUGAUUACAUAUUAUGGACAA&UUAUAUAUAAUAUGUAAUUAU	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN10155_c0_g2_1671_TPlot.pdf
TRINITY_DN10155_c0_g2:1673	si_a461	TRINITY_DN10155_c0_g2	1662	1679	1673	-21.50	-14.30	0.665116279069767	8.5	1-4,1679-1676;8-21,1675-1662	5-7,x-x[BULq]	((((((((((((((---((((&))))...))))))))))))))	GAUUACAUAUUAUG---GACA&UGUUAUAUAUAAUAUGUAAUU	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN10155_c0_g2_1673_TPlot.pdf
TRINITY_DN10155_c0_g2:350	si_a407	TRINITY_DN10155_c0_g2	339	359	350	-19.80	-13.30	0.671717171717172	10	2-14,358-346	1-1,359-359[UP5];15-21,345-339[UP3]	.......(((((((((((((.&.))))))))))))).......	GAAUCUUUAUGAACGAAACAG&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN10155_c0_g2_350_TPlot.pdf
TRINITY_DN10156_c0_g1:1384	si_a767	TRINITY_DN10156_c0_g1	1375	1393	1384	-30.10	-19.90	0.661129568106312	7	1-4,1393-1390;6-10,1388-1384;13-21,1383-1375	5-5,1389-1389[SIL];11-12,x-x[BULq]	(((((((((--(((((.((((&)))).)))))..)))))))))	GAGUUGAAU--AUCAAUGACC&GGUUUUUGAUUGAUUCAACUC	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN10156_c0_g1_1384_TPlot.pdf
TRINITY_DN10156_c0_g1:1685	si_s73	TRINITY_DN10156_c0_g1	1674	1696	1685	-24.00	-17.78	0.740833333333333	11	1-3,1696-1694;6-21,1689-1674	4-5,1693-1690[AILt]	((((((((((((((((....(((&)))--..))))))))))))))))	AAAGGAAAGGAAGAAGCAUGAGA&UCU--AUUUUUUUUCUUUCCUUU	4	0.999999999917865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10156_c0_g1_1685_TPlot.pdf
TRINITY_DN10156_c0_g1:220	si_s94	TRINITY_DN10156_c0_g1	211	229	220	-35.50	-24.60	0.692957746478873	5.5	1-13,229-217;16-19,216-213	14-15,x-x[BULq];20-21,212-211[UP3]	..((((--(((((((((((((&)))))))))))))..))))..	GUGUCC--AGCGAGGAAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN10156_c0_g1_220_TPlot.pdf
TRINITY_DN10156_c0_g1:221	si_s93	TRINITY_DN10156_c0_g1	212	230	221	-34.80	-26.20	0.752873563218391	4.5	1-14,230-217;17-20,216-213	15-16,x-x[BULq];21-21,212-212[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	UGUCC--AGCGAGGAAGAAGA&UCUUCUUCUUCGCUUCGGAUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN10156_c0_g1_221_TPlot.pdf
TRINITY_DN10156_c0_g1:222	si_s92	TRINITY_DN10156_c0_g1	213	231	222	-34.90	-26.90	0.770773638968481	3.5	1-15,231-217;18-21,216-213	16-17,x-x[BULq]	((((--(((((((((((((((&)))))))))))))))..))))	GUCC--AGCGAGGAAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN10156_c0_g1_222_TPlot.pdf
TRINITY_DN10156_c0_g1:223	si_s91	TRINITY_DN10156_c0_g1	205	232	223	-34.70	-26.90	0.77521613832853	10	2-16,231-217;17-20,209-206	1-1,232-232[UP5];x-x,216-210[BULt];21-21,205-205[UP3]	.((((.......(((((((((((((((.&.)))))))))))))))-------)))).	GCCGAGGUGUCCAGCGAGGAAGAAGAAU&UUUCUUCUUCUUCGCU-------UCGGA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN10156_c0_g1_223_TPlot.pdf
TRINITY_DN10156_c0_g1:225	si_s89	TRINITY_DN10156_c0_g1	214	234	225	-35.30	-23.40	0.662889518413598	8.5	4-18,231-217	1-3,234-232[UP5];19-21,216-214[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCCAGCGAGGAAGAAGAAUUA&CCUUUCUUCUUCUUCGCUUCG	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN10156_c0_g1_225_TPlot.pdf
TRINITY_DN10156_c0_g1:226	si_s88	TRINITY_DN10156_c0_g1	215	235	226	-34.80	-23.40	0.672413793103448	9.5	5-19,231-217	1-4,235-232[UP5];20-21,216-215[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAGCGAGGAAGAAGAAUUAG&UCCUUUCUUCUUCUUCGCUUC	3	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN10156_c0_g1_226_TPlot.pdf
TRINITY_DN10156_c0_g1:227	si_s87	TRINITY_DN10156_c0_g1	216	236	227	-32.90	-23.40	0.711246200607903	10.5	6-20,231-217	1-5,236-232[UP5];21-21,216-216[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGCGAGGAAGAAGAAUUAGA&UUCCUUUCUUCUUCUUCGCUU	2	0.999991057568356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10156_c0_g1_227_TPlot.pdf
TRINITY_DN10156_c0_g1:228	si_s86	TRINITY_DN10156_c0_g1	217	237	228	-32.90	-23.40	0.711246200607903	11.5	7-21,231-217	1-6,237-232[UP5]	(((((((((((((((......&......)))))))))))))))	AGCGAGGAAGAAGAAUUAGAU&UUUCCUUUCUUCUUCUUCGCU	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10156_c0_g1_228_TPlot.pdf
TRINITY_DN10156_c0_g1:229	si_s85	TRINITY_DN10156_c0_g1	218	238	229	-33.80	-22.20	0.656804733727811	13.5	8-21,231-218	1-7,238-232[UP5]	((((((((((((((.......&.......))))))))))))))	GCGAGGAAGAAGAAUUAGAUC&CUUUCCUUUCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN10156_c0_g1_229_TPlot.pdf
TRINITY_DN10156_c0_g1:2393	si_s890	TRINITY_DN10156_c0_g1	2382	2402	2393	-29.50	-19.20	0.650847457627119	15	8-18,2395-2385;20-21,2383-2382	1-7,2402-2396[UP5];19-19,2384-2384[SIL]	((.(((((((((((.......&.......))))))))))).))	UGUGGAGAGAGCCUUAACGAA&AAUAAAUAGGCUUUCUCUUCA	4	0.999999111376628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN10156_c0_g1_2393_TPlot.pdf
TRINITY_DN10156_c0_g1:270	si_s772	TRINITY_DN10156_c0_g1	259	279	270	-23.20	-15.20	0.655172413793103	9	1-10,279-270;12-16,268-264	11-11,269-269[SIL];17-21,263-259[UP3]	.....(((((.((((((((((&)))))))))).))))).....	CAAAAAGCAAAAGUAGUUGAU&AUUAAUUACUAUUGCUAUAAA	3	0.999999808103534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN10156_c0_g1_270_TPlot.pdf
TRINITY_DN10156_c0_g1:399	si_s78	TRINITY_DN10156_c0_g1	388	408	399	-26.20	-17.10	0.652671755725191	5.5	1-11,408-398;14-21,395-388	12-13,397-396[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GGAGGAGAAAAAAGAAAGAAA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10156_c0_g1_399_TPlot.pdf
TRINITY_DN10156_c0_g1:4010	si_s484	TRINITY_DN10156_c0_g1	3999	4019	4010	-20.50	-13.40	0.653658536585366	13.5	1-13,4019-4007	14-21,4006-3999[UP3]	........(((((((((((((&)))))))))))))........	UGAAGAGAGAGUAGGUGUGGG&CCUAUAUUUAUUUAAAUAUAA	4	0.999985874321336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN10156_c0_g1_4010_TPlot.pdf
TRINITY_DN10156_c0_g1:4395	si_s77	TRINITY_DN10156_c0_g1	4384	4404	4395	-25.50	-17.38	0.68156862745098	6	1-16,4404-4389;20-21,4385-4384	17-19,4388-4386[SIL]	((...((((((((((((((((&))))))))))))))))...))	GAUAUAAGGGAAGAAGGAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10156_c0_g1_4395_TPlot.pdf
TRINITY_DN10156_c0_g1:4398	si_s74	TRINITY_DN10156_c0_g1	4387	4407	4398	-25.00	-17.50	0.7	8.5	1-1,4407-4407;4-19,4404-4389	2-3,4406-4405[SIL];20-21,4388-4387[UP3]	..((((((((((((((((..(&)..))))))))))))))))..	AUAAGGGAAGAAGGAAAAGUG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN10156_c0_g1_4398_TPlot.pdf
TRINITY_DN10156_c0_g1:4399	si_s73	TRINITY_DN10156_c0_g1	4388	4408	4399	-24.00	-19.10	0.795833333333333	7.5	1-2,4408-4407;5-20,4404-4389	3-4,4406-4405[SIL];21-21,4388-4388[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	UAAGGGAAGAAGGAAAAGUGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10156_c0_g1_4399_TPlot.pdf
TRINITY_DN10156_c0_g1:4400	si_s72	TRINITY_DN10156_c0_g1	4389	4409	4400	-24.10	-19.80	0.821576763485477	6.5	1-3,4409-4407;6-21,4404-4389	4-5,4406-4405[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	AAGGGAAGAAGGAAAAGUGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10156_c0_g1_4400_TPlot.pdf
TRINITY_DN10156_c0_g1:4592	si_s69	TRINITY_DN10156_c0_g1	4581	4601	4592	-23.40	-15.40	0.658119658119658	8	4-7,4598-4595;9-21,4593-4581	1-3,4601-4599[UP5];8-8,4594-4594[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAGGAAAAAAAGAAAAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10156_c0_g1_4592_TPlot.pdf
TRINITY_DN10156_c0_g1:529	si_s85	TRINITY_DN10156_c0_g1	518	539	529	-33.80	-22.00	0.650887573964497	6.5	1-5,539-535;6-13,533-526;15-20,524-519	x-x,534-534[BULt];14-14,525-525[SIL];21-21,518-518[UP3]	.((((((.((((((((.(((((&)))))-)))))))).)))))).	UUGAAGAUGAAGAAAGUGAGGG&CUUUC-CUUUCUUCUUCUUCGC	2	0.999999999999929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN10156_c0_g1_529_TPlot.pdf
TRINITY_DN10156_c0_g1:530	si_s84	TRINITY_DN10156_c0_g1	519	540	530	-32.30	-21.90	0.678018575851393	6.5	2-6,539-535;7-14,533-526;16-21,524-519	1-1,540-540[UP5];x-x,534-534[BULt];15-15,525-525[SIL]	((((((.((((((((.(((((.&.)))))-)))))))).))))))	UGAAGAUGAAGAAAGUGAGGGU&UCUUUC-CUUUCUUCUUCUUCG	2	0.999999999763859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10156_c0_g1_530_TPlot.pdf
TRINITY_DN10156_c0_g1:531	si_s83	TRINITY_DN10156_c0_g1	520	541	531	-30.90	-21.20	0.686084142394822	8	3-7,539-535;8-15,533-526;17-21,524-520	1-2,541-540[UP5];x-x,534-534[BULt];16-16,525-525[SIL]	(((((.((((((((.(((((..&..)))))-)))))))).)))))	GAAGAUGAAGAAAGUGAGGGUG&UUCUUUC-CUUUCUUCUUCUUC	2	0.999999999996816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10156_c0_g1_531_TPlot.pdf
TRINITY_DN10156_c0_g1:536	si_s79	TRINITY_DN10156_c0_g1	524	545	536	-26.20	-17.60	0.67175572519084	10	1-5,545-541;7-11,539-535;12-19,533-526	6-6,540-540[SIL];x-x,534-534[BULt];20-21,525-524[UP3]	..((((((((.(((((.(((((&))))).)))))-))))))))..	AUGAAGAAAGUGAGGGUGAAGA&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10156_c0_g1_536_TPlot.pdf
TRINITY_DN10156_c0_g1:537	si_s78	TRINITY_DN10156_c0_g1	525	546	537	-26.20	-18.50	0.706106870229008	9	1-6,546-541;8-12,539-535;13-20,533-526	7-7,540-540[SIL];x-x,534-534[BULt];21-21,525-525[UP3]	.((((((((.(((((.((((((&)))))).)))))-)))))))).	UGAAGAAAGUGAGGGUGAAGAA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10156_c0_g1_537_TPlot.pdf
TRINITY_DN10156_c0_g1:539	si_s76	TRINITY_DN10156_c0_g1	527	549	539	-23.60	-15.40	0.652542372881356	9	2-9,548-541;10-14,539-535;15-21,533-527	1-1,549-549[UP5];x-x,540-540[BULt];x-x,534-534[BULt]	(((((((.(((((.((((((((.&.))))))))-)))))-)))))))	AAGAAAGUGAGGGUGAAGAAGAA&AUUUUUUUU-CUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10156_c0_g1_539_TPlot.pdf
TRINITY_DN10156_c0_g1:735	si_s89	TRINITY_DN10156_c0_g1	724	745	735	-35.30	-25.50	0.722379603399434	7	1-4,745-742;5-18,740-727	x-x,741-741[BULt];19-21,726-724[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	GUCGGUGAAGAAGAAGAGGAGG&CCUU-UCUUCUUCUUCGCUUCG	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN10156_c0_g1_735_TPlot.pdf
TRINITY_DN10156_c0_g1:736	si_s88	TRINITY_DN10156_c0_g1	725	746	736	-34.80	-25.70	0.738505747126437	6.5	1-5,746-742;6-19,740-727	x-x,741-741[BULt];20-21,726-725[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	UCGGUGAAGAAGAAGAGGAGGG&UCCUU-UCUUCUUCUUCGCUUC	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN10156_c0_g1_736_TPlot.pdf
TRINITY_DN10156_c0_g1:739	si_s85	TRINITY_DN10156_c0_g1	728	746	739	-33.80	-25.50	0.754437869822485	6.5	1-6,746-741;9-21,740-728	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	GUGAAGAAGAAGA--GGAGGG&CUUUCCUUUCUUCUUCUUCGC	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN10156_c0_g1_739_TPlot.pdf
TRINITY_DN10156_c0_g1:740	si_s84	TRINITY_DN10156_c0_g1	729	747	740	-32.30	-22.10	0.68421052631579	7.5	2-7,746-741;10-21,740-729	1-1,747-747[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	UGAAGAAGAAGA--GGAGGGC&UCUUUCCUUUCUUCUUCUUCG	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10156_c0_g1_740_TPlot.pdf
TRINITY_DN10156_c0_g1:741	si_s81	TRINITY_DN10156_c0_g1	729	750	741	-28.90	-20.50	0.709342560553633	8	1-3,750-748;5-13,746-738;14-20,736-730	4-4,747-747[SIL];x-x,737-737[BULt];21-21,729-729[UP3]	.(((((((.(((((((((.(((&))).)))))))))-))))))).	UGAAGAAGAAGAGGAGGGCGAA&UUUUCUUUCCUUU-CUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10156_c0_g1_741_TPlot.pdf
TRINITY_DN10156_c0_g1:743	si_s79	TRINITY_DN10156_c0_g1	731	752	743	-26.20	-17.30	0.66030534351145	9.5	3-5,750-748;7-15,746-738;16-21,736-731	1-2,752-751[UP5];6-6,747-747[SIL];x-x,737-737[BULt]	((((((.(((((((((.(((..&..))).)))))))))-))))))	AAGAAGAAGAGGAGGGCGAAUA&UUUUUUCUUUCCUUU-CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10156_c0_g1_743_TPlot.pdf
TRINITY_DN10156_c0_g1:744	si_s83	TRINITY_DN10156_c0_g1	733	754	744	-30.90	-21.50	0.6957928802589	11.5	5-7,750-748;8-21,746-733	1-4,754-751[UP5];x-x,747-747[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	GAAGAAGAGGAGGGCGAAUACU&UUCUUUC-CUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10156_c0_g1_744_TPlot.pdf
TRINITY_DN10156_c0_g1:780	si_a147	TRINITY_DN10156_c0_g1	765	789	780	-30.40	-19.80	0.651315789473684	9	1-13,789-777;14-21,772-765	x-x,776-773[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	UGAUUUUAUAGUAGACGACGACGGU&AUCGUUGUUGUUU----UAAGGUCA	4	0.999999996762013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN10156_c0_g1_780_TPlot.pdf
TRINITY_DN10156_c0_g1:931	si_s88	TRINITY_DN10156_c0_g1	919	941	931	-34.80	-26.70	0.767241379310345	5	1-5,941-937;6-17,935-924;18-21,922-919	x-x,936-936[BULt];x-x,923-923[BULt]	((((.((((((((((((.(((((&)))))-))))))))))))-))))	GAAGAUGAGGAAGAAGAGGAGGA&UCCUU-UCUUCUUCUUCG-CUUC	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN10156_c0_g1_931_TPlot.pdf
TRINITY_DN10156_c0_g1:935	si_s84	TRINITY_DN10156_c0_g1	924	944	935	-32.30	-23.90	0.739938080495356	6.5	1-6,944-939;8-20,937-925	7-7,938-938[SIL];21-21,924-924[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UGAGGAAGAAGAGGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10156_c0_g1_935_TPlot.pdf
TRINITY_DN10156_c0_g1:969	si_a65	TRINITY_DN10156_c0_g1	956	978	969	-27.70	-18.06	0.651985559566787	11	1-11,978-968;15-21,962-956	12-14,967-963[AILt]	(((((((.....(((((((((((&)))))))))))--...)))))))	AGGAUGAAGAAGGAGAGAAGCGA&UCGCUUCUUUC--AAAUUGUUUU	4	0.999999999988201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN10156_c0_g1_969_TPlot.pdf
TRINITY_DN10158_c0_g1:504	si_s805	TRINITY_DN10158_c0_g1	492	513	504	-28.60	-18.60	0.65034965034965	12	5-17,509-497;19-21,494-492	1-4,513-510[UP5];18-18,496-495[AILt]	(((..(((((((((((((....&....)))))))))))))-.)))	GGAUUAGGGUGAUGAAGACGGC&UUUAUCUUCGUUACCUU-UUCU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN10158_c0_g1_504_TPlot.pdf
TRINITY_DN1015_c0_g1:538	si_s75	TRINITY_DN1015_c0_g1	527	547	538	-24.00	-15.80	0.658333333333333	13	6-19,542-529	1-5,547-543[UP5];20-21,528-527[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGAAGGGAAGAAAGAUUAUU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1015_c0_g1_538_TPlot.pdf
TRINITY_DN10161_c0_g1:2971	si_s627	TRINITY_DN10161_c0_g1	2960	2980	2971	-36.10	-25.20	0.698060941828255	8	3-17,2978-2964	1-2,2980-2979[UP5];18-21,2963-2960[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUUACCUACGAAGAGAUCGAC&AGCGAUCUUUUCGUAGGCGUU	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN10161_c0_g1_2971_TPlot.pdf
TRINITY_DN10161_c0_g1:2983	si_a447	TRINITY_DN10161_c0_g1	2972	2992	2983	-25.70	-17.00	0.66147859922179	11.5	4-16,2989-2977	1-3,2992-2990[UP5];17-21,2976-2972[UP3]	.....(((((((((((((...&...))))))))))))).....	GAGAUCGACGAUUAUCUCGAA&UAUGAGAUAAUUGUUGUUAUA	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN10161_c0_g1_2983_TPlot.pdf
TRINITY_DN10169_c0_g3:109	si_a371	TRINITY_DN10169_c0_g3	98	118	109	-30.30	-20.30	0.66996699669967	5.5	1-8,118-111;10-12,109-107;14-20,105-99	9-9,110-110[SIL];13-13,106-106[SIL];21-21,98-98[UP3]	.(((((((.(((.((((((((&)))))))).))).))))))).	CCGGAAUCUUUUGUGAUCUGA&UCGGAUCAAAAAUGAUUUCGA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN10169_c0_g3_109_TPlot.pdf
TRINITY_DN10169_c0_g3:112	si_a291	TRINITY_DN10169_c0_g3	101	120	112	-27.70	-20.70	0.747292418772563	9	1-9,120-112;13-21,109-101	10-12,111-110[AILq]	(((((((((..-(((((((((&)))))))))...)))))))))	GAAUCUUUUGU-GAUCUGAGC&GCUUGGAUUUAAAAAAGAUUC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN10169_c0_g3_112_TPlot.pdf
TRINITY_DN10169_c0_g3:193	si_s73	TRINITY_DN10169_c0_g3	181	202	193	-24.00	-16.00	0.666666666666667	8	2-7,201-196;9-12,194-191;13-21,189-181	1-1,202-202[UP5];8-8,195-195[SIL];x-x,190-190[BULt]	(((((((((.((((.((((((.&.)))))).))))-)))))))))	AGAGGAAGGCAAAAUGAAUGGU&UCUAUUUUUUUU-CUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10169_c0_g3_193_TPlot.pdf
TRINITY_DN10169_c0_g3:403	si_s123	TRINITY_DN10169_c0_g3	392	412	403	-27.00	-19.10	0.707407407407407	7	4-17,409-396;19-21,394-392	1-3,412-410[UP5];18-18,395-395[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UGACUCAACUUUUCUAUUCUC&AAAAAUAGAAGAGUUGAAUCA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN10169_c0_g3_403_TPlot.pdf
TRINITY_DN1016_c0_g1:1300	si_a806	TRINITY_DN1016_c0_g1	1289	1309	1300	-35.50	-23.40	0.659154929577465	7	3-11,1307-1299;14-21,1296-1289	1-2,1309-1308[UP5];12-13,1298-1297[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	UUUUUUCUCGGCUUCGGAUGU&CAAUCCGAAGCGAAGAAGAAG	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a806_TRINITY_DN1016_c0_g1_1300_TPlot.pdf
TRINITY_DN1016_c0_g1:1500	si_s487	TRINITY_DN1016_c0_g1	1489	1509	1500	-18.40	-13.60	0.739130434782609	5.5	1-17,1509-1493	18-21,1492-1489[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUGUAUGUUUAAAUAAAUGU&AUAUUUAUUUAAAUAUAAACA	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN1016_c0_g1_1500_TPlot.pdf
TRINITY_DN1016_c0_g1:1502	si_s485	TRINITY_DN1016_c0_g1	1491	1511	1502	-18.10	-13.60	0.751381215469613	6.5	3-19,1509-1493	1-2,1511-1510[UP5];20-21,1492-1491[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UGUAUGUUUAAAUAAAUGUUG&CUAUAUUUAUUUAAAUAUAAA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1016_c0_g1_1502_TPlot.pdf
TRINITY_DN1016_c0_g1:1503	si_s484	TRINITY_DN1016_c0_g1	1492	1512	1503	-20.50	-13.90	0.678048780487805	5.5	2-2,1511-1511;4-20,1509-1493	1-1,1512-1512[UP5];3-3,1510-1510[SIL];21-21,1492-1492[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	GUAUGUUUAAAUAAAUGUUGA&CCUAUAUUUAUUUAAAUAUAA	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN1016_c0_g1_1503_TPlot.pdf
TRINITY_DN1016_c0_g1:1965	si_s22	TRINITY_DN1016_c0_g1	1954	1973	1965	-26.70	-17.50	0.655430711610487	7	1-7,1973-1967;10-18,1965-1957	8-9,1966-1966[AILq];19-21,1956-1954[UP3]	...(((((((((.-(((((((&)))))))..)))))))))...	UAGUAGUUGCAAA-AAUAUAG&CUAUAUUGAUUGCAACUAAAU	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN1016_c0_g1_1965_TPlot.pdf
TRINITY_DN10173_c1_g1:1094	si_a69	TRINITY_DN10173_c1_g1	1083	1104	1094	-24.00	-16.00	0.666666666666667	7	1-7,1104-1098;8-18,1096-1086	x-x,1097-1097[BULt];19-21,1085-1083[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	GGAGGAAACAGUUUGGAAAGAA&UUCUUUC-AAAUUGUUUUUCAU	2	0.999999669590304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN10173_c1_g1_1094_TPlot.pdf
TRINITY_DN10173_c1_g1:840	si_s514	TRINITY_DN10173_c1_g1	829	849	840	-24.80	-16.20	0.653225806451613	9.5	4-13,846-837;15-20,835-830	1-3,849-847[UP5];14-14,836-836[SIL];21-21,829-829[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	CUUCGAGAUGAGAAUGUAAGU&UUCUAUAUUCUUAAUUCGAAA	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN10173_c1_g1_840_TPlot.pdf
TRINITY_DN10174_c0_g1:1090	si_s218	TRINITY_DN10174_c0_g1	1079	1100	1090	-35.50	-25.90	0.729577464788732	8	1-6,1100-1095;7-9,1093-1091;11-18,1089-1082	x-x,1094-1094[BULt];10-10,1090-1090[SIL];19-21,1081-1079[UP3]	...((((((((.(((.((((((&))))))-))).))))))))...	UCAUCACGCGGCUUCUGAACGC&GUGUUC-GAAACCGCGUGAAUA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN10174_c0_g1_1090_TPlot.pdf
TRINITY_DN10174_c0_g1:1240	si_s478	TRINITY_DN10174_c0_g1	1229	1249	1240	-27.20	-18.50	0.680147058823529	7	1-11,1249-1239;13-20,1237-1230	12-12,1238-1238[SIL];21-21,1229-1229[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	GUGAAUGAAAAUGGGAUUUGU&ACGGAUCCUAUAUUUAUUUAA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN10174_c0_g1_1240_TPlot.pdf
TRINITY_DN10174_c0_g1:1721	si_a898	TRINITY_DN10174_c0_g1	1710	1729	1721	-20.50	-13.70	0.668292682926829	7	1-3,1729-1727;5-17,1726-1714	4-4,x-x[BULq];18-21,1713-1710[UP3]	....(((((((((((((-(((&))).)))))))))))))....	UAAAAUAUUACUUAUUA-UGC&GUAAUAAUAAGUAAUAUAAAA	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN10174_c0_g1_1721_TPlot.pdf
TRINITY_DN10174_c0_g1:1724	si_a895	TRINITY_DN10174_c0_g1	1713	1732	1724	-21.70	-17.50	0.806451612903226	5	1-6,1732-1727;8-20,1726-1714	7-7,x-x[BULq];21-21,1713-1713[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AAUAUUACUUAUUA-UGCUGU&AUAGUAAUAAUAAGUAAUAUA	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN10174_c0_g1_1724_TPlot.pdf
TRINITY_DN10177_c1_g3:310	si_a809	TRINITY_DN10177_c1_g3	299	320	310	-34.70	-26.50	0.763688760806916	6	1-7,320-314;9-19,311-301	8-8,313-312[AILt];20-21,300-299[UP3]	..(((((((((((..(((((((&)))))))-.)))))))))))..	GCUCUUCUUCUUCUUCUUCGGA&UCCGAAG-CGAAGAAGAAGAAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN10177_c1_g3_310_TPlot.pdf
TRINITY_DN10177_c1_g3:311	si_a808	TRINITY_DN10177_c1_g3	300	321	311	-34.90	-26.50	0.759312320916905	6	2-8,320-314;10-20,311-301	1-1,321-321[UP5];9-9,313-312[AILt];21-21,300-300[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	CUCUUCUUCUUCUUCUUCGGAA&AUCCGAAG-CGAAGAAGAAGAA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN10177_c1_g3_311_TPlot.pdf
TRINITY_DN10177_c2_g1:312	si_a65	TRINITY_DN10177_c2_g1	302	321	312	-27.70	-18.50	0.667870036101083	7	1-11,321-311;15-19,308-304	12-14,310-309[AILq];20-21,303-302[UP3]	..(((((..-(((((((((((&)))))))))))...)))))..	ACAACAAAC-GAAAGGAGCGA&UCGCUUCUUUCAAAUUGUUUU	2	0.999977815886759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN10177_c2_g1_312_TPlot.pdf
TRINITY_DN10177_c2_g1:313	si_a64	TRINITY_DN10177_c2_g1	303	322	313	-29.40	-20.80	0.707482993197279	5	1-12,322-311;16-20,308-304	13-15,310-309[AILq];21-21,303-303[UP3]	.(((((..-((((((((((((&))))))))))))...))))).	CAACAAAC-GAAAGGAGCGAG&CUCGCUUCUUUCAAAUUGUUU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN10177_c2_g1_313_TPlot.pdf
TRINITY_DN10178_c0_g2:273	si_s39	TRINITY_DN10178_c0_g2	262	282	273	-22.30	-15.40	0.690582959641256	6	1-9,282-274;11-17,272-266	10-10,273-273[SIL];18-21,265-262[UP3]	....(((((((.(((((((((&))))))))).)))))))....	CUUGCCAAUUACUAAAGAUUU&AAAUCUUUAAUAAUUGGAUUU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN10178_c0_g2_273_TPlot.pdf
TRINITY_DN10181_c0_g2:500	si_s68	TRINITY_DN10181_c0_g2	489	509	500	-23.10	-16.20	0.701298701298701	4	1-7,509-503;9-16,501-494;18-21,492-489	8-8,502-502[SIL];17-17,493-493[SIL]	((((.((((((((.(((((((&))))))).)))))))).))))	AAGGCGAAAAAAUCGAAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999999757941444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10181_c0_g2_500_TPlot.pdf
TRINITY_DN10182_c0_g1:82	si_s630	TRINITY_DN10182_c0_g1	71	94	82	-35.60	-24.04	0.675280898876404	14	1-5,94-90;7-10,85-82;13-21,79-71	6-6,89-86[AILt];11-12,81-80[SIL]	(((((((((..((((....(((((&)))))---.))))..)))))))))	GCAAACGCCGUCGGACCUUGGAUC&GAUCU---UUUCGUAGGCGUUUGC	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN10182_c0_g1_82_TPlot.pdf
TRINITY_DN10183_c0_g1:83	si_s147	TRINITY_DN10183_c0_g1	72	95	83	-33.10	-22.32	0.674320241691843	17.5	4-8,92-88;11-19,82-74	1-3,95-93[UP5];9-10,87-83[AILt];20-21,73-72[UP3]	..(((((((((.....(((((...&...)))))---..)))))))))..	UCGGACCUCCUCUUCGGGGUUGUG&AAAAACCC---AAAGGAGGUUCAU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN10183_c0_g1_83_TPlot.pdf
TRINITY_DN10183_c0_g3:2090	si_a464	TRINITY_DN10183_c0_g3	2080	2099	2090	-19.60	-12.90	0.658163265306122	6	3-15,2097-2085;17-20,2084-2081	1-2,2099-2098[UP5];16-16,x-x[BULq];21-21,2080-2080[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	UAUAG-UGCAUAUUAUAUAAU&UAUAUAUAAUAUGUAAUUAUU	3	0.999955530688011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN10183_c0_g3_2090_TPlot.pdf
TRINITY_DN10183_c0_g3:2091	si_a463	TRINITY_DN10183_c0_g3	2081	2100	2091	-19.70	-12.90	0.654822335025381	7	4-16,2097-2085;18-21,2084-2081	1-3,2100-2098[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	AUAG-UGCAUAUUAUAUAAUC&UUAUAUAUAAUAUGUAAUUAU	2	0.998794571736414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN10183_c0_g3_2091_TPlot.pdf
TRINITY_DN10183_c0_g3:2386	si_s690	TRINITY_DN10183_c0_g3	2375	2395	2386	-26.70	-17.40	0.651685393258427	7	1-3,2395-2393;5-6,2391-2390;8-20,2388-2376	4-4,2392-2392[SIL];7-7,2389-2389[SIL];21-21,2375-2375[UP3]	.(((((((((((((.((.(((&))).)).))))))))))))).	GAAGUCGAUUGAUUUAAGUCA&UGAGUUUAAUUAGUCGAUUUA	4	0.998853101299611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN10183_c0_g3_2386_TPlot.pdf
TRINITY_DN10184_c0_g1:5855	si_a703	TRINITY_DN10184_c0_g1	5844	5864	5855	-29.20	-20.50	0.702054794520548	10.5	4-10,5861-5855;13-21,5852-5844	1-3,5864-5862[UP5];11-12,5854-5853[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	UUGUUUUGGUUUGUACCGAUU&AACUGGUACAUUCCAAAAUAA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN10184_c0_g1_5855_TPlot.pdf
TRINITY_DN10185_c0_g2:1141	si_s84	TRINITY_DN10185_c0_g2	1130	1151	1141	-32.30	-23.40	0.724458204334365	6	1-6,1151-1146;8-20,1143-1131	7-7,1145-1144[AILt];21-21,1130-1130[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AGAAGAAGAAGAAAAAGAAGGA&UCUUUC-CUUUCUUCUUCUUCG	2	0.999913857178346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10185_c0_g2_1141_TPlot.pdf
TRINITY_DN10185_c0_g2:1142	si_s83	TRINITY_DN10185_c0_g2	1131	1152	1142	-30.90	-23.20	0.750809061488673	6	2-7,1151-1146;9-21,1143-1131	1-1,1152-1152[UP5];8-8,1145-1144[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	GAAGAAGAAGAAAAAGAAGGAG&UUCUUUC-CUUUCUUCUUCUUC	4	0.999997346277844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10185_c0_g2_1142_TPlot.pdf
TRINITY_DN10185_c0_g2:1146	si_s80	TRINITY_DN10185_c0_g2	1134	1155	1146	-28.20	-20.80	0.73758865248227	6.5	1-10,1155-1146;12-21,1143-1134	11-11,1145-1144[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	GAAGAAGAAAAAGAAGGAGAAG&UUUUUCUUUC-CUUUCUUCUUC	4	0.999999999989136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10185_c0_g2_1146_TPlot.pdf
TRINITY_DN10185_c0_g2:1157	si_s75	TRINITY_DN10185_c0_g2	1145	1166	1157	-24.00	-18.50	0.770833333333333	8.5	3-15,1164-1152;16-21,1150-1145	1-2,1166-1165[UP5];x-x,1151-1151[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAAGGAGAAGGAGAAGGAAAA&UAUUUUUUUUCUUUC-CUUUCU	4	0.999999931281327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10185_c0_g2_1157_TPlot.pdf
TRINITY_DN10185_c0_g2:1159	si_s79	TRINITY_DN10185_c0_g2	1147	1168	1159	-26.20	-21.70	0.82824427480916	6	2-11,1167-1158;12-21,1156-1147	1-1,1168-1168[UP5];x-x,1157-1157[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAGGAGAAGGAGAAGGAAAAGG&UUUUUUCUUUC-CUUUCUUCUU	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10185_c0_g2_1159_TPlot.pdf
TRINITY_DN10185_c0_g2:1160	si_s78	TRINITY_DN10185_c0_g2	1148	1169	1160	-26.20	-22.40	0.854961832061069	6	1-12,1169-1158;13-21,1156-1148	x-x,1157-1157[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	AGGAGAAGGAGAAGGAAAAGGA&UUUUUUUCUUUC-CUUUCUUCU	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10185_c0_g2_1160_TPlot.pdf
TRINITY_DN10185_c0_g2:828	si_a234	TRINITY_DN10185_c0_g2	817	837	828	-31.30	-22.40	0.715654952076677	6	1-4,837-834;7-20,831-818	5-6,833-832[SIL];21-21,817-817[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGGAUUGGAUUGAUUUGAGAA&UUCUAUAAUCAAUUCGAUCCC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a234_TRINITY_DN10185_c0_g2_828_TPlot.pdf
TRINITY_DN10185_c1_g1:1537	si_s77	TRINITY_DN10185_c1_g1	1520	1546	1537	-25.50	-16.70	0.654901960784314	18	1-10,1546-1537;11-20,1530-1521	x-x,1536-1531[BULt];21-21,1520-1520[UP3]	.((((((((((......((((((((((&))))))))))------)))))))))).	UAGGGAAGGAGGUAAAUAGAGAAGAGA&UUUUUUUUCU------UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10185_c1_g1_1537_TPlot.pdf
TRINITY_DN10189_c1_g1:384	si_s64	TRINITY_DN10189_c1_g1	373	393	384	-24.10	-16.10	0.66804979253112	10.5	1-12,393-382	13-21,381-373[UP3]	.........((((((((((((&)))))))))))).........	GGAUAUUUAAGGAGUUGCUAG&UUAGCAACUUCUAUUUUUUUU	4	0.999999999888056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN10189_c1_g1_384_TPlot.pdf
TRINITY_DN10189_c1_g1:629	si_a477	TRINITY_DN10189_c1_g1	618	638	629	-21.50	-14.40	0.669767441860465	9.5	3-10,636-629;13-21,626-618	1-2,638-637[UP5];11-12,628-627[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	UAUUUUAUAGUACAGUGAUAG&UAAUUAUUGUUAUAUAGAAUA	3	0.999837544122648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN10189_c1_g1_629_TPlot.pdf
TRINITY_DN10194_c0_g1:2533	si_a398	TRINITY_DN10194_c0_g1	2522	2542	2533	-22.40	-16.70	0.745535714285714	10	4-18,2539-2525	1-3,2542-2540[UP5];19-21,2524-2522[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGUACGAAGCAGUUCUAUUGU&AAUAUAGAAUUGUUUUGUUUA	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN10194_c0_g1_2533_TPlot.pdf
TRINITY_DN10194_c0_g1:4178	si_s818	TRINITY_DN10194_c0_g1	4167	4185	4178	-23.70	-16.00	0.675105485232067	11	1-8,4185-4178;11-18,4177-4170	9-10,x-x[BULq];19-21,4169-4167[UP3]	...((((((((--((((((((&))))))))..))))))))...	GUGUUCAUUGU--GGAGAGGG&CCUUUUCUUAAUAAUGAAAAA	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN10194_c0_g1_4178_TPlot.pdf
TRINITY_DN10195_c0_g2:79	si_a873	TRINITY_DN10195_c0_g2	68	88	79	-27.00	-17.80	0.659259259259259	9.5	2-4,87-85;7-20,82-69	1-1,88-88[UP5];5-6,84-83[SIL];21-21,68-68[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	GUGAUUGUAGCUGGAGAUUUU&UAAAGAUUUAGUUGCAAUCAA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN10195_c0_g2_79_TPlot.pdf
TRINITY_DN10198_c0_g1:4007	si_s201	TRINITY_DN10198_c0_g1	3996	4016	4007	-33.60	-22.00	0.654761904761905	8.5	4-16,4013-4001;18-21,3999-3996	1-3,4016-4014[UP5];17-17,4000-4000[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GCAUUAUUGGUACAUUCUGUU&UUUGGAAUGUACCAGUUGUGU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN10198_c0_g1_4007_TPlot.pdf
TRINITY_DN10198_c1_g1:3666	si_s187	TRINITY_DN10198_c1_g1	3655	3676	3666	-29.60	-20.60	0.695945945945946	10	2-5,3675-3672;8-19,3668-3657	1-1,3676-3676[UP5];6-7,3671-3669[AILt];20-21,3656-3655[UP3]	..((((((((((((...((((.&.))))-..))))))))))))..	AACCAAAAUAAUCGGGAGCUCU&CGAGU-AACGAUUAUUUUGGAA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s187_TRINITY_DN10198_c1_g1_3666_TPlot.pdf
TRINITY_DN10198_c1_g1:4743	si_a222	TRINITY_DN10198_c1_g1	4732	4752	4743	-25.20	-16.40	0.650793650793651	14	5-16,4748-4737	1-4,4752-4749[UP5];17-21,4736-4732[UP3]	.....((((((((((((....&....)))))))))))).....	GGGUCGGAGACAUGGGUACUC&UUAAACUCAUGUUUCUAUAAU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN10198_c1_g1_4743_TPlot.pdf
TRINITY_DN10198_c1_g1:4744	si_a221	TRINITY_DN10198_c1_g1	4733	4753	4744	-25.20	-16.40	0.650793650793651	15	6-17,4748-4737	1-5,4753-4749[UP5];18-21,4736-4733[UP3]	....((((((((((((.....&.....))))))))))))....	GGUCGGAGACAUGGGUACUCU&AUUAAACUCAUGUUUCUAUAA	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN10198_c1_g1_4744_TPlot.pdf
TRINITY_DN10198_c1_g1:4745	si_a220	TRINITY_DN10198_c1_g1	4734	4754	4745	-25.10	-16.40	0.653386454183267	16	7-18,4748-4737	1-6,4754-4749[UP5];19-21,4736-4734[UP3]	...((((((((((((......&......))))))))))))...	GUCGGAGACAUGGGUACUCUG&AAUUAAACUCAUGUUUCUAUA	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN10198_c1_g1_4745_TPlot.pdf
TRINITY_DN10198_c1_g1:4746	si_a219	TRINITY_DN10198_c1_g1	4735	4755	4746	-25.10	-16.40	0.653386454183267	17	8-19,4748-4737	1-7,4755-4749[UP5];20-21,4736-4735[UP3]	..((((((((((((.......&.......))))))))))))..	UCGGAGACAUGGGUACUCUGC&UAAUUAAACUCAUGUUUCUAU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN10198_c1_g1_4746_TPlot.pdf
TRINITY_DN10199_c0_g1:1365	si_s638	TRINITY_DN10199_c0_g1	1354	1378	1365	-40.30	-26.32	0.653101736972705	19.5	1-8,1378-1371;13-19,1362-1356	9-12,1370-1363[AILt];20-21,1355-1354[UP3]	..(((((((........((((((((&))))))))----....)))))))..	GCUCGGGGGAGCAUCCUCGCCUGCG&CGUAGGCG----UUUGCCCUCGAUA	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN10199_c0_g1_1365_TPlot.pdf
TRINITY_DN10199_c0_g1:1366	si_s637	TRINITY_DN10199_c0_g1	1355	1379	1366	-40.90	-27.92	0.682640586797066	17.5	1-9,1379-1371;14-20,1362-1356	10-13,1370-1363[AILt];21-21,1355-1355[UP3]	.(((((((........(((((((((&)))))))))----....))))))).	CUCGGGGGAGCAUCCUCGCCUGCGA&UCGUAGGCG----UUUGCCCUCGAU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN10199_c0_g1_1366_TPlot.pdf
TRINITY_DN10199_c0_g1:1371	si_s636	TRINITY_DN10199_c0_g1	1356	1380	1371	-40.80	-28.22	0.691666666666667	16	1-10,1380-1371;15-21,1362-1356	11-14,1370-1363[AILt]	(((((((........((((((((((&))))))))))----....)))))))	UCGGGGGAGCAUCCUCGCCUGCGAG&UUCGUAGGCG----UUUGCCCUCGA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN10199_c0_g1_1371_TPlot.pdf
TRINITY_DN10199_c0_g1:138	si_a300	TRINITY_DN10199_c0_g1	127	147	138	-28.20	-18.80	0.666666666666667	11	6-17,142-131;19-21,129-127	1-5,147-143[UP5];18-18,130-130[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GAUGUAAGCGAAUCUUCGUCC&UAAAAAAGAUUCGCUUGGAUU	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN10199_c0_g1_138_TPlot.pdf
TRINITY_DN10199_c0_g1:1469	si_s628	TRINITY_DN10199_c0_g1	1451	1478	1469	-35.40	-23.98	0.677401129943503	20.5	1-12,1478-1467;15-19,1457-1453	13-14,1466-1458[AILt];20-21,1452-1451[UP3]	..(((((.........((((((((((((&))))))))))))-------..)))))..	CCGCGCCGCUUUUGAUUGAGAAGAUCGC&GCGAUCUUUUCG-------UAGGCGUUU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN10199_c0_g1_1469_TPlot.pdf
TRINITY_DN10199_c0_g1:1471	si_s626	TRINITY_DN10199_c0_g1	1453	1480	1471	-36.10	-24.08	0.667036011080332	14	3-14,1478-1467;17-21,1457-1453	1-2,1480-1479[UP5];15-16,1466-1458[AILt]	(((((.........((((((((((((..&..))))))))))))-------..)))))	GCGCCGCUUUUGAUUGAGAAGAUCGCAG&AAGCGAUCUUUUCG-------UAGGCGU	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN10199_c0_g1_1471_TPlot.pdf
TRINITY_DN10199_c0_g1:1583	si_s569	TRINITY_DN10199_c0_g1	1572	1592	1583	-30.60	-20.30	0.663398692810457	11	1-12,1592-1581	13-21,1580-1572[UP3]	.........((((((((((((&)))))))))))).........	GACCCUGGCCCUUGUCCUGGA&UUCGGGACAAGGAAUAAAAAA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN10199_c0_g1_1583_TPlot.pdf
TRINITY_DN10199_c0_g1:1585	si_s567	TRINITY_DN10199_c0_g1	1574	1594	1585	-30.60	-22.20	0.725490196078431	10	1-14,1594-1581	15-21,1580-1574[UP3]	.......((((((((((((((&)))))))))))))).......	CCCUGGCCCUUGUCCUGGAGA&UUUUCGGGACAAGGAAUAAAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN10199_c0_g1_1585_TPlot.pdf
TRINITY_DN10199_c0_g1:1586	si_s566	TRINITY_DN10199_c0_g1	1575	1595	1586	-30.70	-22.20	0.723127035830619	10	2-15,1594-1581	1-1,1595-1595[UP5];16-21,1580-1575[UP3]	......((((((((((((((.&.))))))))))))))......	CCUGGCCCUUGUCCUGGAGAA&AUUUUCGGGACAAGGAAUAAA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s566_TRINITY_DN10199_c0_g1_1586_TPlot.pdf
TRINITY_DN10199_c0_g1:1587	si_s565	TRINITY_DN10199_c0_g1	1576	1596	1587	-31.10	-22.20	0.713826366559486	11	3-16,1594-1581	1-2,1596-1595[UP5];17-21,1580-1576[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUGGCCCUUGUCCUGGAGAAG&UAUUUUCGGGACAAGGAAUAA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s565_TRINITY_DN10199_c0_g1_1587_TPlot.pdf
TRINITY_DN10199_c0_g1:1588	si_s564	TRINITY_DN10199_c0_g1	1577	1597	1588	-31.20	-22.20	0.711538461538462	12	4-17,1594-1581	1-3,1597-1595[UP5];18-21,1580-1577[UP3]	....((((((((((((((...&...))))))))))))))....	UGGCCCUUGUCCUGGAGAAGG&AUAUUUUCGGGACAAGGAAUA	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s564_TRINITY_DN10199_c0_g1_1588_TPlot.pdf
TRINITY_DN10199_c0_g1:1589	si_s563	TRINITY_DN10199_c0_g1	1578	1598	1589	-30.80	-22.20	0.720779220779221	13	5-18,1594-1581	1-4,1598-1595[UP5];19-21,1580-1578[UP3]	...((((((((((((((....&....))))))))))))))...	GGCCCUUGUCCUGGAGAAGGC&AAUAUUUUCGGGACAAGGAAU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN10199_c0_g1_1589_TPlot.pdf
TRINITY_DN10199_c0_g1:1590	si_s562	TRINITY_DN10199_c0_g1	1579	1599	1590	-31.10	-22.20	0.713826366559486	14	6-19,1594-1581	1-5,1599-1595[UP5];20-21,1580-1579[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCCCUUGUCCUGGAGAAGGCG&UAAUAUUUUCGGGACAAGGAA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s562_TRINITY_DN10199_c0_g1_1590_TPlot.pdf
TRINITY_DN10199_c0_g1:1591	si_s561	TRINITY_DN10199_c0_g1	1580	1600	1591	-31.10	-22.20	0.713826366559486	15	7-20,1594-1581	1-6,1600-1595[UP5];21-21,1580-1580[UP3]	.((((((((((((((......&......)))))))))))))).	CCCUUGUCCUGGAGAAGGCGG&UUAAUAUUUUCGGGACAAGGA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s561_TRINITY_DN10199_c0_g1_1591_TPlot.pdf
TRINITY_DN10199_c0_g1:1592	si_s560	TRINITY_DN10199_c0_g1	1581	1601	1592	-30.20	-21.40	0.708609271523179	15.5	8-21,1594-1581	1-7,1601-1595[UP5]	((((((((((((((.......&.......))))))))))))))	CCUUGUCCUGGAGAAGGCGGC&AUUAAUAUUUUCGGGACAAGG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s560_TRINITY_DN10199_c0_g1_1592_TPlot.pdf
TRINITY_DN10199_c0_g1:1593	si_s559	TRINITY_DN10199_c0_g1	1582	1602	1593	-27.80	-18.10	0.651079136690648	17.5	9-21,1594-1582	1-8,1602-1595[UP5]	(((((((((((((........&........)))))))))))))	CUUGUCCUGGAGAAGGCGGCG&AAUUAAUAUUUUCGGGACAAG	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN10199_c0_g1_1593_TPlot.pdf
TRINITY_DN10199_c0_g1:1622	si_s79	TRINITY_DN10199_c0_g1	1611	1632	1622	-26.20	-18.40	0.702290076335878	8	1-8,1632-1625;9-14,1623-1618;16-20,1616-1612	x-x,1624-1624[BULt];15-15,1617-1617[SIL];21-21,1611-1611[UP3]	.(((((.((((((.((((((((&))))))))-)))))).))))).	CGGGAGUGAGGAGAAGAAGAAG&UUUUUUCU-UUCCUUUCUUCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10199_c0_g1_1622_TPlot.pdf
TRINITY_DN10199_c0_g1:1623	si_a329	TRINITY_DN10199_c0_g1	1611	1632	1623	-29.60	-19.50	0.658783783783784	8.5	2-8,1631-1625;10-15,1623-1618;17-21,1615-1611	1-1,1632-1632[UP5];9-9,1624-1624[SIL];16-16,1617-1616[AILt]	(((((..((((((.(((((((.&.))))))).))))))-.)))))	CGGGAGUGAGGAGAAGAAGAAG&AUUUUUUUAUUCCUU-GUCCCG	4	0.999999995400848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN10199_c0_g1_1623_TPlot.pdf
TRINITY_DN10199_c0_g1:1626	si_s88	TRINITY_DN10199_c0_g1	1613	1636	1626	-34.80	-24.20	0.695402298850575	7	2-2,1635-1635;3-14,1633-1622;15-21,1619-1613	1-1,1636-1636[UP5];x-x,1634-1634[BULt];x-x,1621-1620[BULt]	(((((((..((((((((((((.(.&.)-))))))))))))--)))))))	GGAGUGAGGAGAAGAAGAAGGCGG&UC-CUUUCUUCUUCU--UCGCUUC	3	0.999999997035464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN10199_c0_g1_1626_TPlot.pdf
TRINITY_DN10199_c0_g1:1627	si_s87	TRINITY_DN10199_c0_g1	1614	1637	1627	-32.90	-23.30	0.708206686930091	7	1-3,1637-1635;4-15,1633-1622;16-21,1619-1614	x-x,1634-1634[BULt];x-x,1621-1620[BULt]	((((((..((((((((((((.(((&)))-))))))))))))--))))))	GAGUGAGGAGAAGAAGAAGGCGGA&UUC-CUUUCUUCUUCU--UCGCUU	2	0.999995762223937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10199_c0_g1_1627_TPlot.pdf
TRINITY_DN10199_c0_g1:1628	si_s86	TRINITY_DN10199_c0_g1	1615	1638	1628	-32.90	-22.20	0.674772036474164	7.5	2-4,1637-1635;5-16,1633-1622;17-21,1619-1615	1-1,1638-1638[UP5];x-x,1634-1634[BULt];x-x,1621-1620[BULt]	(((((..((((((((((((.(((.&.)))-))))))))))))--)))))	AGUGAGGAGAAGAAGAAGGCGGAU&UUUC-CUUUCUUCUUCU--UCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10199_c0_g1_1628_TPlot.pdf
TRINITY_DN10199_c0_g1:1630	si_s84	TRINITY_DN10199_c0_g1	1619	1640	1630	-32.30	-21.60	0.668730650154799	10.5	4-6,1637-1635;7-20,1633-1620	1-3,1640-1638[UP5];x-x,1634-1634[BULt];21-21,1619-1619[UP3]	.((((((((((((((.(((...&...)))-)))))))))))))).	AGGAGAAGAAGAAGGCGGAUUA&UCUUUC-CUUUCUUCUUCUUCG	2	0.999999999993528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10199_c0_g1_1630_TPlot.pdf
TRINITY_DN10199_c0_g1:1633	si_s81	TRINITY_DN10199_c0_g1	1622	1647	1633	-28.90	-19.80	0.685121107266436	13.5	1-6,1647-1642;7-9,1637-1635;10-21,1633-1622	x-x,1641-1638[BULt];x-x,1634-1634[BULt]	((((((((((((.(((....((((((&))))))----)))-))))))))))))	AGAAGAAGAAGGCGGAUUACAGAGAG&UUUUCU----UUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10199_c0_g1_1633_TPlot.pdf
TRINITY_DN10199_c0_g1:1635	si_s80	TRINITY_DN10199_c0_g1	1623	1648	1635	-28.20	-19.00	0.673758865248227	14.5	1-7,1648-1642;8-10,1637-1635;11-21,1633-1623	x-x,1641-1638[BULt];x-x,1634-1634[BULt]	(((((((((((.(((....(((((((&)))))))----)))-)))))))))))	GAAGAAGAAGGCGGAUUACAGAGAGG&UUUUUCU----UUC-CUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10199_c0_g1_1635_TPlot.pdf
TRINITY_DN1019_c0_g4:626	si_s487	TRINITY_DN1019_c0_g4	615	635	626	-18.40	-12.60	0.684782608695652	8	1-16,635-620	17-21,619-615[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGAGAAUAUUUGAAUAAGUGU&AUAUUUAUUUAAAUAUAAACA	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN1019_c0_g4_626_TPlot.pdf
TRINITY_DN1019_c0_g4:628	si_s485	TRINITY_DN1019_c0_g4	617	637	628	-18.10	-12.60	0.696132596685083	9	3-18,635-620	1-2,637-636[UP5];19-21,619-617[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAAUAUUUGAAUAAGUGUUU&CUAUAUUUAUUUAAAUAUAAA	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1019_c0_g4_628_TPlot.pdf
TRINITY_DN1019_c0_g4:629	si_s484	TRINITY_DN1019_c0_g4	618	640	629	-20.50	-15.60	0.760975609756098	9.5	1-3,640-638;4-19,635-620	x-x,637-636[BULt];20-21,619-618[UP3]	..((((((((((((((((..(((&)))--))))))))))))))))..	GAAUAUUUGAAUAAGUGUUUGGG&CCU--AUAUUUAUUUAAAUAUAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN1019_c0_g4_629_TPlot.pdf
TRINITY_DN1019_c0_g4:631	si_s482	TRINITY_DN1019_c0_g4	620	643	631	-21.20	-17.00	0.80188679245283	9.5	1-5,643-639;6-21,635-620	x-x,638-636[BULt]	((((((((((((((((...(((((&)))))---))))))))))))))))	AUAUUUGAAUAAGUGUUUGGGGAU&AUCCU---AUAUUUAUUUAAAUAU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN1019_c0_g4_631_TPlot.pdf
TRINITY_DN1019_c0_g4:632	si_s481	TRINITY_DN1019_c0_g4	621	644	632	-23.00	-17.10	0.743478260869565	10	1-6,644-639;7-21,635-621	x-x,638-636[BULt]	(((((((((((((((...((((((&))))))---)))))))))))))))	UAUUUGAAUAAGUGUUUGGGGAUU&GAUCCU---AUAUUUAUUUAAAUA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN1019_c0_g4_632_TPlot.pdf
TRINITY_DN10207_c0_g1:2115	si_a322	TRINITY_DN10207_c0_g1	2103	2124	2115	-27.00	-17.70	0.655555555555556	7.5	2-8,2123-2117;10-16,2115-2109;18-21,2106-2103	1-1,2124-2124[UP5];9-9,2116-2116[SIL];17-17,2108-2107[AILt]	((((..(((((((.(((((((.&.))))))).)))))))-.))))	AGGACUUGAAAAAUUCGUGGGC&AUCCAUGAUUUUUUUA-UUCCU	4	0.999999965938056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN10207_c0_g1_2115_TPlot.pdf
TRINITY_DN10208_c0_g1:459	si_s437	TRINITY_DN10208_c0_g1	448	468	459	-19.70	-13.10	0.66497461928934	8.5	4-16,465-453;19-21,450-448	1-3,468-466[UP5];17-18,452-451[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	UUACUUGUAAUAUGUAGUAAU&AUAAUUACAUAUUAUAUAUAA	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN10208_c0_g1_459_TPlot.pdf
TRINITY_DN10208_c0_g1:464	si_s777	TRINITY_DN10208_c0_g1	451	473	464	-26.60	-18.08	0.679699248120301	6.5	2-14,472-460;17-21,455-451	1-1,473-473[UP5];15-16,459-456[AILt]	(((((....(((((((((((((.&.)))))))))))))--..)))))	CUUGUAAUAUGUAGUAAUAGUAU&UUACUAUUGCUAUA--AAACAAG	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN10208_c0_g1_464_TPlot.pdf
TRINITY_DN10209_c0_g2:1656	si_s161	TRINITY_DN10209_c0_g2	1645	1667	1656	-41.50	-27.20	0.655421686746988	7.5	1-7,1667-1661;8-15,1658-1651;17-21,1649-1645	x-x,1660-1659[BULt];16-16,1650-1650[SIL]	(((((.((((((((..(((((((&)))))))--)))))))).)))))	CUUUGGCCUUGGCUUUAUGAACU&GGUUCAU--GGCCAGGGGUAAAG	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN10209_c0_g2_1656_TPlot.pdf
TRINITY_DN1020_c0_g1:3313	si_a358	TRINITY_DN1020_c0_g1	3301	3322	3313	-29.10	-19.30	0.663230240549828	12	2-10,3321-3313;12-20,3310-3302	1-1,3322-3322[UP5];11-11,3312-3311[AILt];21-21,3301-3301[UP3]	.(((((((((..(((((((((.&.)))))))))-.))))))))).	CGAUCUGGUUUUGAGUGGAGUA&AAUUCUAUUU-UGAUCGGAUCA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN1020_c0_g1_3313_TPlot.pdf
TRINITY_DN1020_c0_g1:4419	si_a406	TRINITY_DN1020_c0_g1	4408	4429	4419	-19.80	-14.70	0.742424242424242	6.5	1-9,4429-4421;10-19,4419-4410	x-x,4420-4420[BULt];20-21,4409-4408[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AAUGAAUAUAAAUCAAAACGGU&AUUGUUUUG-UUUAUAUUUAAA	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1020_c0_g1_4419_TPlot.pdf
TRINITY_DN10219_c0_g1:2287	si_s83	TRINITY_DN10219_c0_g1	2273	2296	2287	-30.90	-20.10	0.650485436893204	13	6-16,2291-2281;17-21,2277-2273	1-5,2296-2292[UP5];x-x,2280-2278[BULt]	(((((...(((((((((((.....&.....)))))))))))---)))))	GAAGAAAUAGAAGAAGGGAUAAAG&UUCUUUCCUUUCUUCU---UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10219_c0_g1_2287_TPlot.pdf
TRINITY_DN1021_c0_g1:4132	si_s79	TRINITY_DN1021_c0_g1	4120	4144	4132	-26.20	-18.20	0.694656488549618	12.5	1-8,4144-4137;9-15,4133-4127;16-21,4125-4120	x-x,4136-4134[BULt];x-x,4126-4126[BULt]	((((((.(((((((...((((((((&))))))))---)))))))-))))))	GAGGAGCAGAGGGAAUUGGAGAAGA&UUUUUUCU---UUCCUUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1021_c0_g1_4132_TPlot.pdf
TRINITY_DN1021_c0_g1:4133	si_s78	TRINITY_DN1021_c0_g1	4121	4145	4133	-26.20	-17.10	0.652671755725191	13	2-9,4144-4137;10-16,4133-4127;17-21,4125-4121	1-1,4145-4145[UP5];x-x,4136-4134[BULt];x-x,4126-4126[BULt]	(((((.(((((((...((((((((.&.))))))))---)))))))-)))))	AGGAGCAGAGGGAAUUGGAGAAGAU&UUUUUUUCU---UUCCUUU-CUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1021_c0_g1_4133_TPlot.pdf
TRINITY_DN1021_c0_g1:4138	si_s899	TRINITY_DN1021_c0_g1	4127	4151	4138	-28.30	-18.70	0.660777385159011	15.5	1-6,4151-4146;7-17,4141-4131	x-x,4145-4142[BULt];18-21,4130-4127[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	AGAGGGAAUUGGAGAAGAUGAGGGC&GCUUUC----UCUUCAAUUUCAAUU	4	0.999999999651607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN1021_c0_g1_4138_TPlot.pdf
TRINITY_DN10220_c0_g1:412	si_s71	TRINITY_DN10220_c0_g1	397	421	412	-25.70	-17.50	0.680933852140078	7	1-4,421-418;6-13,416-409;14-21,404-397	5-5,417-417[SIL];x-x,408-405[BULt]	((((((((....((((((((.((((&)))).))))))))----))))))))	AGGAAAGACCCUAAGAAAAUUGAAG&CUUCUAUUUUUUU----UCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10220_c0_g1_412_TPlot.pdf
TRINITY_DN10222_c0_g2:481	si_a451	TRINITY_DN10222_c0_g2	470	490	481	-23.60	-16.00	0.677966101694915	9	2-14,489-477	1-1,490-490[UP5];15-21,476-470[UP3]	.......(((((((((((((.&.))))))))))))).......	CGUUGAAAACAGCAAUUAUCA&AGAUAAUUGUUGUUAUAUAUA	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN10222_c0_g2_481_TPlot.pdf
TRINITY_DN10222_c1_g1:60	si_s883	TRINITY_DN10222_c1_g1	49	69	60	-24.30	-15.80	0.650205761316872	14	7-19,63-51	1-6,69-64[UP5];20-21,50-49[UP3]	..(((((((((((((......&......)))))))))))))..	CCGGCCUGUUUAUUUAUACUC&AACUAAAAAUAAAUAGGCUUU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN10222_c1_g1_60_TPlot.pdf
TRINITY_DN10225_c0_g1:1592	si_a504	TRINITY_DN10225_c0_g1	1577	1601	1592	-32.90	-21.60	0.656534954407295	8.5	1-11,1601-1591;13-17,1589-1585;18-21,1580-1577	12-12,1590-1590[SIL];x-x,1584-1581[BULt]	((((....(((((.(((((((((((&))))))))))).)))))----))))	GCGUCUACUCCAACGAAGACGAGAG&UUUUCGUCUUCCUUGGA----AUGU	3	0.999999836795323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN10225_c0_g1_1592_TPlot.pdf
TRINITY_DN10225_c0_g1:1594	si_a502	TRINITY_DN10225_c0_g1	1583	1603	1594	-32.10	-21.40	0.666666666666667	8	3-13,1601-1591;15-19,1589-1585	1-2,1603-1602[UP5];14-14,1590-1590[SIL];20-21,1584-1583[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	ACUCCAACGAAGACGAGAGCA&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999996786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN10225_c0_g1_1594_TPlot.pdf
TRINITY_DN10225_c0_g1:2050	si_a328	TRINITY_DN10225_c0_g1	2037	2059	2050	-30.10	-19.90	0.661129568106312	9.5	1-2,2059-2058;4-11,2056-2049;12-20,2046-2038	3-3,2057-2057[SIL];x-x,2048-2047[BULt];21-21,2037-2037[UP3]	.(((((((((..((((((((.((&)).))))))))--))))))))).	CGGAUAAGGAUGGUAGAAAAUUC&GAUUUUUUUAU--UCCUUGUCCC	3	0.999999886634672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN10225_c0_g1_2050_TPlot.pdf
TRINITY_DN10225_c0_g1:2051	si_a327	TRINITY_DN10225_c0_g1	2038	2060	2051	-28.40	-20.90	0.735915492957746	8.5	1-3,2060-2058;5-12,2056-2049;13-21,2046-2038	4-4,2057-2057[SIL];x-x,2048-2047[BULt]	(((((((((..((((((((.(((&))).))))))))--)))))))))	GGAUAAGGAUGGUAGAAAAUUCA&UGAUUUUUUUAU--UCCUUGUCC	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN10225_c0_g1_2051_TPlot.pdf
TRINITY_DN10225_c0_g1:2052	si_a326	TRINITY_DN10225_c0_g1	2039	2061	2052	-26.20	-17.50	0.66793893129771	7	2-4,2060-2058;6-13,2056-2049;14-21,2046-2039	1-1,2061-2061[UP5];5-5,2057-2057[SIL];x-x,2048-2047[BULt]	((((((((..((((((((.(((.&.))).))))))))--))))))))	GAUAAGGAUGGUAGAAAAUUCAA&AUGAUUUUUUUAU--UCCUUGUC	3	0.999999994333769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN10225_c0_g1_2052_TPlot.pdf
TRINITY_DN10225_c0_g1:2193	si_a227	TRINITY_DN10225_c0_g1	2181	2202	2193	-26.80	-17.50	0.652985074626866	9.5	1-3,2202-2200;5-10,2198-2193;11-18,2191-2184	4-4,2199-2199[SIL];x-x,2192-2192[BULt];19-21,2183-2181[UP3]	...((((((((.((((((.(((&))).))))))-))))))))...	UACUGAUUGUGUGAAGCAAGAG&CUCAUGUUUC-UAUAAUCAAUU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN10225_c0_g1_2193_TPlot.pdf
TRINITY_DN10225_c0_g1:2322	si_a477	TRINITY_DN10225_c0_g1	2311	2331	2322	-21.50	-14.10	0.655813953488372	6.5	1-6,2331-2326;8-18,2324-2314	7-7,2325-2325[SIL];19-21,2313-2311[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	CAGUUUAUAUGACAUUAAUUA&UAAUUAUUGUUAUAUAGAAUA	3	0.999976733936909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN10225_c0_g1_2322_TPlot.pdf
TRINITY_DN10228_c0_g1:1051	si_a403	TRINITY_DN10228_c0_g1	1040	1060	1051	-22.00	-15.00	0.681818181818182	11	1-9,1060-1052;11-17,1050-1044	10-10,1051-1051[SIL];18-21,1043-1040[UP3]	....(((((((.(((((((((&))))))))).)))))))....	UUAGGUGAACGCGACGGUUCU&AGAAUUGUUUUGUUUAUAUUU	4	0.999999998610957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN10228_c0_g1_1051_TPlot.pdf
TRINITY_DN10228_c0_g1:5146	si_a66	TRINITY_DN10228_c0_g1	5135	5155	5146	-26.70	-17.60	0.659176029962547	8	1-9,5155-5147;11-15,5145-5141;17-21,5139-5135	10-10,5146-5146[SIL];16-16,5140-5140[SIL]	(((((.(((((.(((((((((&))))))))).))))).)))))	AGAAAGAGUUUUGGGGGAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN10228_c0_g1_5146_TPlot.pdf
TRINITY_DN10228_c0_g1:777	si_a231	TRINITY_DN10228_c0_g1	766	787	777	-26.90	-17.60	0.654275092936803	10	1-8,787-780;10-14,777-773;16-21,771-766	9-9,779-778[AILt];15-15,772-772[SIL]	((((((.(((((..((((((((&))))))))-.))))).))))))	GUCGGAGUGGUUUUUGGAGGCA&UGUUUCUA-UAAUCAAUUCGAU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN10228_c0_g1_777_TPlot.pdf
TRINITY_DN10228_c0_g1:9849	si_s273	TRINITY_DN10228_c0_g1	9837	9858	9849	-29.50	-21.20	0.71864406779661	3	1-12,9858-9847;14-18,9845-9841;19-21,9839-9837	13-13,9846-9846[SIL];x-x,9840-9840[BULt]	(((.(((((.((((((((((((&)))))))))))).)))))-)))	GGUAGUGUUUUGUCGAUUUUUU&AAAAAAUCGACAUAAUAC-GCC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s273_TRINITY_DN10228_c0_g1_9849_TPlot.pdf
TRINITY_DN10228_c1_g1:720	si_s73	TRINITY_DN10228_c1_g1	709	729	720	-24.00	-17.20	0.716666666666667	9.5	3-18,727-712	1-2,729-728[UP5];19-21,711-709[UP3]	...((((((((((((((((..&..))))))))))))))))...	GCUGGAAGGAAAGGAAAUGUA&UCUAUUUUUUUUCUUUCCUUU	2	0.999999999328236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10228_c1_g1_720_TPlot.pdf
TRINITY_DN10228_c1_g1:722	si_s71	TRINITY_DN10228_c1_g1	711	731	722	-25.70	-17.20	0.669260700389105	11.5	5-20,727-712	1-4,731-728[UP5];21-21,711-711[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGAAGGAAAGGAAAUGUAAU&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10228_c1_g1_722_TPlot.pdf
TRINITY_DN1022_c0_g1:1319	si_s2	TRINITY_DN1022_c0_g1	1308	1328	1319	-20.50	-14.50	0.707317073170732	3.5	1-9,1328-1320;11-20,1318-1309	10-10,1319-1319[SIL];21-21,1308-1308[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AUGAUAAUAAGAAAUAUAAAA&UUUUAUAUUACUUAUUAUUAC	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN1022_c0_g1_1319_TPlot.pdf
TRINITY_DN1022_c0_g1:2641	si_a410	TRINITY_DN1022_c0_g1	2630	2650	2641	-17.80	-11.90	0.668539325842697	7	1-14,2650-2637	15-21,2636-2630[UP3]	.......((((((((((((((&)))))))))))))).......	AAGUCAAAAAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1022_c0_g1_2641_TPlot.pdf
TRINITY_DN1022_c0_g2:1308	si_s75	TRINITY_DN1022_c0_g2	1295	1317	1308	-24.00	-15.70	0.654166666666667	7	3-15,1315-1303;16-21,1300-1295	1-2,1317-1316[UP5];x-x,1302-1301[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AGGAGGAAGAAAGAAAAAAAGCC&UAUUUUUUUUCUUUC--CUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1022_c0_g2_1308_TPlot.pdf
TRINITY_DN10233_c0_g1:1102	si_s1	TRINITY_DN10233_c0_g1	1091	1110	1102	-18.70	-12.80	0.684491978609626	6	2-9,1109-1102;11-19,1101-1093	1-1,1110-1110[UP5];10-10,x-x[BULq];20-21,1092-1091[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	ACGUGAUAAGU-AUAUAAAAG&UUUUUAUAUUACUUAUUAUUA	3	0.999999897547806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN10233_c0_g1_1102_TPlot.pdf
TRINITY_DN10234_c0_g1:460	si_s552	TRINITY_DN10234_c0_g1	449	469	460	-21.10	-15.80	0.748815165876777	10	6-21,464-449	1-5,469-465[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAAGAUAUUAAUUCUCCGGA&AAAAUAGAAUUAAUAUUUUCG	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN10234_c0_g1_460_TPlot.pdf
TRINITY_DN10240_c0_g1:175	si_a893	TRINITY_DN10240_c0_g1	160	184	175	-21.70	-15.40	0.709677419354839	14	1-11,184-174;12-19,169-162	x-x,173-170[BULt];20-21,161-160[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	CUUUACUUAUAAAAUGUUGCUGUGU&AUAUAGUAAUA----AUAAGUAAUA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN10240_c0_g1_175_TPlot.pdf
TRINITY_DN10240_c0_g1:746	si_s86	TRINITY_DN10240_c0_g1	736	756	746	-32.90	-22.00	0.668693009118541	6.5	1-6,756-751;8-17,748-739;19-21,738-736	7-7,750-749[AILt];18-18,x-x[BULq]	(((-((((((((((..((((((&))))))-.)))))))))).)))	AGC-AAGAAGAGGAUCAGGAAG&UUUCCU-UUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10240_c0_g1_746_TPlot.pdf
TRINITY_DN10242_c0_g1:2065	si_a763	TRINITY_DN10242_c0_g1	2051	2074	2065	-28.80	-21.20	0.736111111111111	5.5	1-17,2074-2058;18-21,2054-2051	x-x,2057-2055[BULt]	((((...(((((((((((((((((&)))))))))))))))))---))))	UGGAACCUCAAUCAAAAGCUCAAA&UUUGGGUUUUUGAUUGA---UUCA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN10242_c0_g1_2065_TPlot.pdf
TRINITY_DN10245_c3_g1:132	si_a763	TRINITY_DN10245_c3_g1	117	141	132	-28.80	-19.20	0.666666666666667	14.5	4-11,138-131;12-21,126-117	1-3,141-139[UP5];x-x,130-127[BULt]	((((((((((....((((((((...&...))))))))----))))))))))	UGGAUCAAUUGUAUAAAAACCCGUA&UUUGGGUUUUU----GAUUGAUUCA	4	0.999999990128624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN10245_c3_g1_132_TPlot.pdf
TRINITY_DN10247_c0_g1:167	si_a194	TRINITY_DN10247_c0_g1	156	176	167	-29.40	-19.30	0.656462585034014	13.5	4-14,173-163	1-3,176-174[UP5];15-21,162-156[UP3]	.......(((((((((((...&...))))))))))).......	AGCAAGAGGUGGACAGGGUCG&UUUCCCUGUUCACUAAUAAAU	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN10247_c0_g1_167_TPlot.pdf
TRINITY_DN10247_c0_g1:182	si_a327	TRINITY_DN10247_c0_g1	166	191	182	-28.40	-18.68	0.657746478873239	17.5	2-10,190-182;14-21,173-166	1-1,191-191[UP5];11-13,181-174[AILt]	((((((((........(((((((((.&.)))))))))-----...))))))))	GGACAGGGUCGAAAUGAAAAAGAUCU&UGAUUUUUUU-----AUUCCUUGUCC	3	0.999999999102074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN10247_c0_g1_182_TPlot.pdf
TRINITY_DN10247_c0_g1:530	si_s68	TRINITY_DN10247_c0_g1	519	540	530	-23.10	-17.30	0.748917748917749	8	1-8,540-533;10-20,530-520	9-9,532-531[AILt];21-21,519-519[UP3]	.(((((((((((..((((((((&))))))))-.))))))))))).	UAAGAAGGAAAGGGAGAGGUUG&CAACUUCU-AUUUUUUUUCUUU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10247_c0_g1_530_TPlot.pdf
TRINITY_DN10247_c0_g1:531	si_s67	TRINITY_DN10247_c0_g1	520	541	531	-25.60	-21.60	0.84375	7	1-9,541-533;11-21,530-520	10-10,532-531[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	AAGAAGGAAAGGGAGAGGUUGC&GCAACUUCU-AUUUUUUUUCUU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN10247_c0_g1_531_TPlot.pdf
TRINITY_DN10247_c0_g1:534	si_s65	TRINITY_DN10247_c0_g1	522	543	534	-26.00	-19.70	0.757692307692308	9.5	3-11,541-533;13-21,530-522	1-2,543-542[UP5];12-12,532-531[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	GAAGGAAAGGGAGAGGUUGCAG&UAGCAACUUCU-AUUUUUUUUC	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN10247_c0_g1_534_TPlot.pdf
TRINITY_DN10247_c0_g1:535	si_s64	TRINITY_DN10247_c0_g1	524	544	535	-24.10	-16.80	0.697095435684647	9	4-12,541-533;14-21,531-524	1-3,544-542[UP5];13-13,532-532[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AGGAAAGGGAGAGGUUGCAGG&UUAGCAACUUCUAUUUUUUUU	3	0.999993368199119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN10247_c0_g1_535_TPlot.pdf
TRINITY_DN10247_c0_g1:546	si_s77	TRINITY_DN10247_c0_g1	529	555	546	-25.50	-17.10	0.670588235294118	18.5	1-12,555-544;13-20,537-530	x-x,543-538[BULt];21-21,529-529[UP3]	.((((((((......((((((((((((&))))))))))))------)))))))).	AGGGAGAGGUUGCAGGAAGAAGAGAGA&UUUUUUUUCUUU------CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10247_c0_g1_546_TPlot.pdf
TRINITY_DN10247_c0_g1:547	si_s76	TRINITY_DN10247_c0_g1	530	556	547	-23.60	-16.90	0.716101694915254	12	2-13,555-544;14-21,537-530	1-1,556-556[UP5];x-x,543-538[BULt]	((((((((......((((((((((((.&.))))))))))))------))))))))	GGGAGAGGUUGCAGGAAGAAGAGAGAA&AUUUUUUUUCUUU------CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10247_c0_g1_547_TPlot.pdf
TRINITY_DN10247_c0_g1:548	si_s75	TRINITY_DN10247_c0_g1	531	557	548	-24.00	-16.60	0.691666666666667	13.5	3-14,555-544;15-21,537-531	1-2,557-556[UP5];x-x,543-538[BULt]	(((((((......((((((((((((..&..))))))))))))------)))))))	GGAGAGGUUGCAGGAAGAAGAGAGAAU&UAUUUUUUUUCUUU------CCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10247_c0_g1_548_TPlot.pdf
TRINITY_DN10247_c0_g1:553	si_s82	TRINITY_DN10247_c0_g1	542	563	553	-28.90	-19.50	0.674740484429066	8.5	2-6,562-558;9-21,554-542	1-1,563-563[UP5];7-8,557-555[AILt]	(((((((((((((...(((((.&.)))))-..)))))))))))))	AGGAAGAAGAGAGAAUAAGAAU&UUUCUU-UCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10247_c0_g1_553_TPlot.pdf
TRINITY_DN10247_c0_g1:554	si_s81	TRINITY_DN10247_c0_g1	543	564	554	-28.90	-18.80	0.650519031141869	10.5	3-7,562-558;10-21,554-543	1-2,564-563[UP5];8-9,557-555[AILt]	((((((((((((...(((((..&..)))))-..))))))))))))	GGAAGAAGAGAGAAUAAGAAUG&UUUUCUU-UCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10247_c0_g1_554_TPlot.pdf
TRINITY_DN10247_c0_g1:556	si_s74	TRINITY_DN10247_c0_g1	543	565	556	-25.00	-17.10	0.684	7	1-8,565-558;10-16,556-550;17-21,547-543	9-9,557-557[SIL];x-x,549-548[BULt]	(((((..(((((((.((((((((&)))))))).)))))))--)))))	GGAAGAAGAGAGAAUAAGAAUGG&CUAUUUUUUUUCUUUC--CUUUC	2	0.999999999999839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN10247_c0_g1_556_TPlot.pdf
TRINITY_DN10247_c0_g1:557	si_s73	TRINITY_DN10247_c0_g1	544	566	557	-24.00	-16.40	0.683333333333333	7	1-9,566-558;11-17,556-550;18-21,547-544	10-10,557-557[SIL];x-x,549-548[BULt]	((((..(((((((.(((((((((&))))))))).)))))))--))))	GAAGAAGAGAGAAUAAGAAUGGA&UCUAUUUUUUUUCUUUC--CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10247_c0_g1_557_TPlot.pdf
TRINITY_DN10247_c0_g1:558	si_s72	TRINITY_DN10247_c0_g1	547	567	558	-24.10	-16.60	0.688796680497925	7.5	1-10,567-558;12-18,556-550	11-11,557-557[SIL];19-21,549-547[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	GAAGAGAGAAUAAGAAUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10247_c0_g1_558_TPlot.pdf
TRINITY_DN10247_c0_g1:560	si_s70	TRINITY_DN10247_c0_g1	549	569	560	-25.80	-16.80	0.651162790697674	7.5	3-12,567-558;14-20,556-550	1-2,569-568[UP5];13-13,557-557[SIL];21-21,549-549[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	AGAGAGAAUAAGAAUGGAAAA&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10247_c0_g1_560_TPlot.pdf
TRINITY_DN10247_c0_g1:561	si_s69	TRINITY_DN10247_c0_g1	550	570	561	-23.40	-16.80	0.717948717948718	8.5	4-13,567-558;15-21,556-550	1-3,570-568[UP5];14-14,557-557[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GAGAGAAUAAGAAUGGAAAAU&AACUUCUAUUUUUUUUCUUUC	3	0.999999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10247_c0_g1_561_TPlot.pdf
TRINITY_DN10248_c0_g1:44	si_a68	TRINITY_DN10248_c0_g1	32	52	44	-25.40	-17.50	0.688976377952756	7.5	1-6,52-47;8-12,46-42;14-21,39-32	7-7,x-x[BULq];13-13,41-40[AILt]	((((((((..(((((-((((((&)))))).)))))-.))))))))	UGAAGAACUCGUUUG-GAGAAG&CUUCUUUCAAAU-UGUUUUUCA	3	0.999999921254109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN10248_c0_g1_44_TPlot.pdf
TRINITY_DN1024_c0_g1:2892	si_a764	TRINITY_DN1024_c0_g1	2882	2901	2892	-28.90	-20.60	0.71280276816609	5.5	2-13,2900-2889;15-20,2888-2883	1-1,2901-2901[UP5];14-14,x-x[BULq];21-21,2882-2882[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	CUGGAUC-AUCAAGAACUCAU&UUGGGUUUUUGAUUGAUUCAA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1024_c0_g1_2892_TPlot.pdf
TRINITY_DN1024_c0_g1:2893	si_a763	TRINITY_DN1024_c0_g1	2883	2902	2893	-28.80	-20.30	0.704861111111111	6.5	3-14,2900-2889;16-21,2888-2883	1-2,2902-2901[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UGGAUC-AUCAAGAACUCAUG&UUUGGGUUUUUGAUUGAUUCA	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1024_c0_g1_2893_TPlot.pdf
TRINITY_DN1024_c0_g1:3101	si_a765	TRINITY_DN1024_c0_g1	3091	3110	3101	-30.50	-19.90	0.652459016393443	6	1-12,3110-3099;14-19,3098-3093	13-13,x-x[BULq];20-21,3092-3091[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	ACUGGGUC-AUCAAGAACUCA&UGGGUUUUUGAUUGAUUCAAC	2	0.995968609530716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN1024_c0_g1_3101_TPlot.pdf
TRINITY_DN1024_c0_g1:3102	si_a764	TRINITY_DN1024_c0_g1	3092	3111	3102	-28.90	-20.10	0.695501730103806	6	2-13,3110-3099;15-20,3098-3093	1-1,3111-3111[UP5];14-14,x-x[BULq];21-21,3092-3092[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	CUGGGUC-AUCAAGAACUCAU&UUGGGUUUUUGAUUGAUUCAA	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1024_c0_g1_3102_TPlot.pdf
TRINITY_DN1024_c0_g1:3103	si_a763	TRINITY_DN1024_c0_g1	3093	3112	3103	-28.80	-19.80	0.6875	7	3-14,3110-3099;16-21,3098-3093	1-2,3112-3111[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UGGGUC-AUCAAGAACUCAUG&UUUGGGUUUUUGAUUGAUUCA	2	0.998809481697721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1024_c0_g1_3103_TPlot.pdf
TRINITY_DN1024_c0_g1:3104	si_a762	TRINITY_DN1024_c0_g1	3094	3113	3104	-29.70	-19.90	0.67003367003367	7	1-2,3113-3112;4-15,3110-3099;17-21,3098-3094	3-3,3111-3111[SIL];16-16,x-x[BULq]	(((((-((((((((((((.((&)).)))))))))))).)))))	GGGUC-AUCAAGAACUCAUGG&CUUUGGGUUUUUGAUUGAUUC	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1024_c0_g1_3104_TPlot.pdf
TRINITY_DN1024_c0_g1:3105	si_a761	TRINITY_DN1024_c0_g1	3095	3114	3105	-30.10	-21.10	0.700996677740864	7	1-3,3114-3112;5-16,3110-3099;18-21,3098-3095	4-4,3111-3111[SIL];17-17,x-x[BULq]	((((-((((((((((((.(((&))).)))))))))))).))))	GGUC-AUCAAGAACUCAUGGG&CCUUUGGGUUUUUGAUUGAUU	3	0.999463646079035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN1024_c0_g1_3105_TPlot.pdf
TRINITY_DN1024_c0_g1:3106	si_a760	TRINITY_DN1024_c0_g1	3096	3115	3106	-31.10	-20.80	0.668810289389068	7	1-4,3115-3112;6-17,3110-3099;19-21,3098-3096	5-5,3111-3111[SIL];18-18,x-x[BULq]	(((-((((((((((((.((((&)))).)))))))))))).)))	GUC-AUCAAGAACUCAUGGGG&UCCUUUGGGUUUUUGAUUGAU	3	0.999999366446917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1024_c0_g1_3106_TPlot.pdf
TRINITY_DN1024_c0_g1:3109	si_a757	TRINITY_DN1024_c0_g1	3098	3119	3109	-33.10	-22.60	0.682779456193353	8.5	1-3,3119-3117;4-7,3115-3112;9-20,3110-3099	x-x,3116-3116[BULt];8-8,3111-3111[SIL];21-21,3098-3098[UP3]	.((((((((((((.((((.(((&)))-)))).)))))))))))).	CAUCAAGAACUCAUGGGGUGGU&ACC-UCCUUUGGGUUUUUGAUU	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1024_c0_g1_3109_TPlot.pdf
TRINITY_DN1024_c0_g1:3110	si_a756	TRINITY_DN1024_c0_g1	3099	3120	3110	-33.10	-22.90	0.691842900302115	8.5	2-4,3119-3117;5-8,3115-3112;10-21,3110-3099	1-1,3120-3120[UP5];x-x,3116-3116[BULt];9-9,3111-3111[SIL]	((((((((((((.((((.(((.&.)))-)))).))))))))))))	AUCAAGAACUCAUGGGGUGGUG&AACC-UCCUUUGGGUUUUUGAU	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1024_c0_g1_3110_TPlot.pdf
TRINITY_DN10251_c0_g1:1291	si_s21	TRINITY_DN10251_c0_g1	1280	1302	1291	-27.40	-18.30	0.667883211678832	10.5	2-7,1301-1296;8-18,1293-1283	1-1,1302-1302[UP5];x-x,1295-1294[BULt];19-21,1282-1280[UP3]	...(((((((((((..((((((.&.))))))--)))))))))))...	GCGAGUUGUAAUCAUGGUGUAGC&ACUAUAU--UGAUUGCAACUAAA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN10251_c0_g1_1291_TPlot.pdf
TRINITY_DN10251_c0_g1:1293	si_s19	TRINITY_DN10251_c0_g1	1282	1304	1293	-27.80	-18.30	0.658273381294964	12.5	4-9,1301-1296;10-20,1293-1283	1-3,1304-1302[UP5];x-x,1295-1294[BULt];21-21,1282-1282[UP3]	.(((((((((((..((((((...&...))))))--))))))))))).	GAGUUGUAAUCAUGGUGUAGCAG&UUACUAUAU--UGAUUGCAACUA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN10251_c0_g1_1293_TPlot.pdf
TRINITY_DN10251_c0_g1:1329	si_a76	TRINITY_DN10251_c0_g1	1318	1338	1329	-21.20	-15.30	0.721698113207547	7	1-5,1338-1334;7-19,1332-1320	6-6,1333-1333[SIL];20-21,1319-1318[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AGUAAUAAUGGAAAGGGAUUU&AAAUUGUUUUUCAUUAUUAAG	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN10251_c0_g1_1329_TPlot.pdf
TRINITY_DN10251_c0_g1:1333	si_a72	TRINITY_DN10251_c0_g1	1322	1342	1333	-21.90	-15.50	0.707762557077626	9.5	4-9,1339-1334;11-21,1332-1322	1-3,1342-1340[UP5];10-10,1333-1333[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AUAAUGGAAAGGGAUUUGUAC&UUUCAAAUUGUUUUUCAUUAU	4	0.999997970858953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN10251_c0_g1_1333_TPlot.pdf
TRINITY_DN10251_c0_g1:1517	si_s82	TRINITY_DN10251_c0_g1	1506	1526	1517	-28.90	-20.20	0.698961937716263	5	1-7,1526-1520;10-21,1517-1506	8-9,1519-1518[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAAGAAGAAACUGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10251_c0_g1_1517_TPlot.pdf
TRINITY_DN10251_c0_g1:1518	si_s81	TRINITY_DN10251_c0_g1	1507	1527	1518	-28.90	-20.30	0.70242214532872	5	1-8,1527-1520;11-21,1517-1507	9-10,1519-1518[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	AGAAGAAGAAACUGAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	2	0.999999999998634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10251_c0_g1_1518_TPlot.pdf
TRINITY_DN10251_c0_g1:1519	si_s80	TRINITY_DN10251_c0_g1	1508	1528	1519	-28.20	-19.20	0.680851063829787	6	2-9,1527-1520;12-21,1517-1508	1-1,1528-1528[UP5];10-11,1519-1518[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	GAAGAAGAAACUGAAGAAAAG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10251_c0_g1_1519_TPlot.pdf
TRINITY_DN10251_c0_g1:1520	si_s79	TRINITY_DN10251_c0_g1	1509	1529	1520	-26.20	-17.70	0.675572519083969	6	1-10,1529-1520;13-21,1517-1509	11-12,1519-1518[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AAGAAGAAACUGAAGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10251_c0_g1_1520_TPlot.pdf
TRINITY_DN10251_c0_g1:1521	si_s78	TRINITY_DN10251_c0_g1	1510	1530	1521	-26.20	-17.70	0.675572519083969	5	1-11,1530-1520;14-21,1517-1510	12-13,1519-1518[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AGAAGAAACUGAAGAAAAGAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10251_c0_g1_1521_TPlot.pdf
TRINITY_DN10251_c0_g1:1522	si_s77	TRINITY_DN10251_c0_g1	1511	1531	1522	-25.50	-17.10	0.670588235294118	4	1-12,1531-1520;15-21,1517-1511	13-14,1519-1518[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAACUGAAGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10251_c0_g1_1522_TPlot.pdf
TRINITY_DN10251_c0_g1:1587	si_a68	TRINITY_DN10251_c0_g1	1576	1597	1587	-25.40	-17.70	0.696850393700787	7	1-7,1597-1591;8-9,1589-1588;12-21,1585-1576	x-x,1590-1590[BULt];10-11,1587-1586[SIL]	((((((((((..((.(((((((&)))))))-))..))))))))))	UGAAGAACGAACUGAAAAGAAG&CUUCUUU-CAAAUUGUUUUUCA	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN10251_c0_g1_1587_TPlot.pdf
TRINITY_DN10251_c0_g1:1601	si_a785	TRINITY_DN10251_c0_g1	1589	1611	1601	-25.90	-18.10	0.698841698841699	6	1-7,1611-1605;9-15,1602-1596;17-21,1593-1589	8-8,1604-1603[AILt];16-16,1595-1594[AILt]	(((((..(((((((..(((((((&)))))))-.)))))))-.)))))	GAAAAGAAGAAAAAGAAGAAGAG&CUCUUCU-AUUUUUCU-AUUUUC	3	0.999999999768692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN10251_c0_g1_1601_TPlot.pdf
TRINITY_DN10251_c0_g1:1610	si_s87	TRINITY_DN10251_c0_g1	1599	1620	1610	-32.90	-21.80	0.662613981762918	9	1-3,1620-1618;4-17,1616-1603	x-x,1617-1617[BULt];18-21,1602-1599[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	AAAAGAAGAAGAGGAAGGUGGA&UUC-CUUUCUUCUUCUUCGCUU	2	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10251_c0_g1_1610_TPlot.pdf
TRINITY_DN10251_c0_g1:1615	si_s82	TRINITY_DN10251_c0_g1	1604	1624	1615	-28.90	-21.80	0.754325259515571	6.5	2-7,1623-1618;9-21,1616-1604	1-1,1624-1624[UP5];8-8,1617-1617[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	AAGAAGAGGAAGGUGGAGAAC&UUUCUUUCCUUUCUUCUUCUU	3	0.999999990973786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10251_c0_g1_1615_TPlot.pdf
TRINITY_DN10251_c0_g1:1616	si_s81	TRINITY_DN10251_c0_g1	1605	1625	1616	-28.90	-20.90	0.72318339100346	8.5	3-8,1623-1618;10-21,1616-1605	1-2,1625-1624[UP5];9-9,1617-1617[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGAAGAGGAAGGUGGAGAACG&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10251_c0_g1_1616_TPlot.pdf
TRINITY_DN10251_c0_g1:1617	si_s80	TRINITY_DN10251_c0_g1	1606	1626	1617	-28.20	-19.60	0.695035460992908	10.5	4-9,1623-1618;11-21,1616-1606	1-3,1626-1624[UP5];10-10,1617-1617[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAGGAAGGUGGAGAACGA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10251_c0_g1_1617_TPlot.pdf
TRINITY_DN10251_c0_g1:1618	si_a499	TRINITY_DN10251_c0_g1	1607	1627	1618	-35.20	-25.80	0.732954545454545	6.5	1-19,1627-1609	20-21,1608-1607[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAGAGGAAGGUGGAGAACGAC&GUCGUUUUUCGUCUUCCUUGG	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN10251_c0_g1_1618_TPlot.pdf
TRINITY_DN10251_c0_g1:1619	si_a498	TRINITY_DN10251_c0_g1	1608	1628	1619	-33.50	-25.90	0.773134328358209	6	2-20,1627-1609	1-1,1628-1628[UP5];21-21,1608-1608[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGAGGAAGGUGGAGAACGACG&UGUCGUUUUUCGUCUUCCUUG	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN10251_c0_g1_1619_TPlot.pdf
TRINITY_DN10251_c0_g1:1620	si_a497	TRINITY_DN10251_c0_g1	1609	1629	1620	-32.00	-25.90	0.809375	6.5	3-21,1627-1609	1-2,1629-1628[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAGGAAGGUGGAGAACGACGA&AUGUCGUUUUUCGUCUUCCUU	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN10251_c0_g1_1620_TPlot.pdf
TRINITY_DN10251_c0_g1:1621	si_a496	TRINITY_DN10251_c0_g1	1610	1630	1621	-32.40	-24.80	0.765432098765432	8	4-21,1627-1610	1-3,1630-1628[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGAAGGUGGAGAACGACGAG&UAUGUCGUUUUUCGUCUUCCU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN10251_c0_g1_1621_TPlot.pdf
TRINITY_DN10251_c0_g1:1622	si_a495	TRINITY_DN10251_c0_g1	1611	1631	1622	-31.90	-23.50	0.736677115987461	9.5	5-21,1627-1611	1-4,1631-1628[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAAGGUGGAGAACGACGAGC&AUAUGUCGUUUUUCGUCUUCC	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN10251_c0_g1_1622_TPlot.pdf
TRINITY_DN10251_c0_g1:1717	si_s82	TRINITY_DN10251_c0_g1	1706	1724	1717	-28.90	-18.90	0.653979238754325	7	3-8,1722-1717;11-21,1716-1706	1-2,1724-1723[UP5];9-10,x-x[BULq]	(((((((((((--((((((..&..))))))..)))))))))))	AAGAAGAAGAA--GAAAGAUA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10251_c0_g1_1717_TPlot.pdf
TRINITY_DN10251_c0_g1:1744	si_s77	TRINITY_DN10251_c0_g1	1730	1753	1744	-25.50	-17.50	0.686274509803922	9	1-11,1753-1743;12-16,1740-1736;17-21,1734-1730	x-x,1742-1741[BULt];x-x,1735-1735[BULt]	(((((.(((((..(((((((((((&)))))))))))--)))))-)))))	GGAGACAGGGAAAAAGAGGAAGAA&UUUUUUUUCUU--UCCUU-UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10251_c0_g1_1744_TPlot.pdf
TRINITY_DN10251_c0_g1:1745	si_s76	TRINITY_DN10251_c0_g1	1731	1754	1745	-23.60	-15.40	0.652542372881356	10	2-12,1753-1743;13-17,1740-1736;18-21,1734-1731	1-1,1754-1754[UP5];x-x,1742-1741[BULt];x-x,1735-1735[BULt]	((((.(((((..(((((((((((.&.)))))))))))--)))))-))))	GAGACAGGGAAAAAGAGGAAGAAG&AUUUUUUUUCUU--UCCUU-UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10251_c0_g1_1745_TPlot.pdf
TRINITY_DN10251_c0_g1:2020	si_s549	TRINITY_DN10251_c0_g1	2009	2029	2020	-20.50	-13.50	0.658536585365854	8.5	3-16,2027-2014	1-2,2029-2028[UP5];17-21,2013-2009[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUAACUUAGUUCUAUUUUGCA&AUCAAAAUAGAAUUAAUAUUU	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN10251_c0_g1_2020_TPlot.pdf
TRINITY_DN10251_c0_g1:2083	si_a315	TRINITY_DN10251_c0_g1	2073	2092	2083	-27.00	-18.10	0.67037037037037	5.5	2-4,2091-2089;6-12,2087-2081;14-20,2080-2074	1-1,2092-2092[UP5];5-5,2088-2088[SIL];13-13,x-x[BULq];21-21,2073-2073[UP3]	.(((((((-(((((((.(((.&.))).))))))).))))))).	UAAAAGUC-UGGAUAAUUCCU&UGGAUUUAUCCAUGAUUUUUU	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN10251_c0_g1_2083_TPlot.pdf
TRINITY_DN10251_c0_g1:2084	si_a314	TRINITY_DN10251_c0_g1	2074	2093	2084	-27.10	-18.10	0.66789667896679	6.5	3-5,2091-2089;7-13,2087-2081;15-21,2080-2074	1-2,2093-2092[UP5];6-6,2088-2088[SIL];14-14,x-x[BULq]	(((((((-(((((((.(((..&..))).))))))).)))))))	AAAAGUC-UGGAUAAUUCCUA&UUGGAUUUAUCCAUGAUUUUU	2	0.999669637442774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN10251_c0_g1_2084_TPlot.pdf
TRINITY_DN10251_c0_g1:296	si_a410	TRINITY_DN10251_c0_g1	285	305	296	-17.80	-11.90	0.668539325842697	9	1-14,305-292	15-21,291-285[UP3]	.......((((((((((((((&)))))))))))))).......	AAAGCCAGGAUAUAAGCAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN10251_c0_g1_296_TPlot.pdf
TRINITY_DN10251_c0_g1:297	si_a409	TRINITY_DN10251_c0_g1	286	306	297	-19.50	-13.20	0.676923076923077	8.5	1-15,306-292	16-21,291-286[UP3]	......(((((((((((((((&)))))))))))))))......	AAGCCAGGAUAUAAGCAAAAU&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999935389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10251_c0_g1_297_TPlot.pdf
TRINITY_DN10258_c0_g1:1355	si_a16	TRINITY_DN10258_c0_g1	1343	1364	1355	-26.30	-17.50	0.665399239543726	8.5	3-13,1362-1352;15-20,1349-1344	1-2,1364-1363[UP5];14-14,1351-1350[AILt];21-21,1343-1343[UP3]	.((((((..(((((((((((..&..)))))))))))-.)))))).	UCUAAGAUUUGAAUGGGCUUGG&GAAAGCCUAUUUA-UUUUUAGU	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN10258_c0_g1_1355_TPlot.pdf
TRINITY_DN1025_c0_g1:277	si_a68	TRINITY_DN1025_c0_g1	266	291	277	-25.40	-17.78	0.7	17.5	1-8,291-284;12-20,275-267	9-11,283-276[AILt];21-21,266-266[UP3]	.(((((((((........((((((((&))))))))-----...))))))))).	AGAAAGACAAGAAGAAGGGAAAGAAG&CUUCUUUC-----AAAUUGUUUUUCA	4	0.99999750563007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1025_c0_g1_277_TPlot.pdf
TRINITY_DN1025_c0_g1:278	si_s86	TRINITY_DN1025_c0_g1	261	287	278	-32.90	-21.50	0.653495440729483	8.5	1-13,287-275;14-17,268-265;19-21,263-261	x-x,274-269[BULt];18-18,264-264[SIL]	(((.((((......(((((((((((((&)))))))))))))------)))).)))	GGCCAAGAAAGACAAGAAGAAGGGAAA&UUUCCUUUCUUCU------UCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1025_c0_g1_278_TPlot.pdf
TRINITY_DN1025_c0_g1:287	si_s77	TRINITY_DN1025_c0_g1	276	296	287	-25.50	-22.50	0.882352941176471	9.5	5-21,292-276	1-4,296-293[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAGAAGGGAAAGAAGGCGUC&UUUUUUUUCUUUCCUUUCUUC	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1025_c0_g1_287_TPlot.pdf
TRINITY_DN1025_c0_g1:288	si_s76	TRINITY_DN1025_c0_g1	277	297	288	-23.60	-19.30	0.817796610169491	11.5	6-21,292-277	1-5,297-293[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGAAGGGAAAGAAGGCGUCA&AUUUUUUUUCUUUCCUUUCUU	4	0.99998984753454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1025_c0_g1_288_TPlot.pdf
TRINITY_DN1025_c0_g1:289	si_s75	TRINITY_DN1025_c0_g1	278	298	289	-24.00	-18.40	0.766666666666667	13.5	7-21,292-278	1-6,298-293[UP5]	(((((((((((((((......&......)))))))))))))))	AGAAGGGAAAGAAGGCGUCAG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999989055347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1025_c0_g1_289_TPlot.pdf
TRINITY_DN1025_c0_g1:332	si_s899	TRINITY_DN1025_c0_g1	321	341	332	-28.30	-18.44	0.651590106007067	9	1-11,341-331;17-21,325-321	12-16,330-326[SIL]	(((((.....(((((((((((&))))))))))).....)))))	GAUUGUCGAGGAGGAGAAGGU&GCUUUCUCUUCAAUUUCAAUU	3	0.999999999997568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN1025_c0_g1_332_TPlot.pdf
TRINITY_DN1025_c0_g1:356	si_s315	TRINITY_DN1025_c0_g1	344	366	356	-31.60	-20.70	0.65506329113924	7.5	2-5,365-362;7-15,359-351;16-21,349-344	1-1,366-366[UP5];6-6,361-360[AILt];x-x,350-350[BULt]	((((((.(((((((((..((((.&.))))-.)))))))))-))))))	UUGUGAGCAAGGAGGAGGAGAAG&AUUCU-GUCCUUCUUG-UUACAA	4	0.999999898279812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN1025_c0_g1_356_TPlot.pdf
TRINITY_DN1025_c0_g1:364	si_s90	TRINITY_DN1025_c0_g1	353	373	364	-35.30	-25.50	0.722379603399434	5	1-14,373-360;16-19,358-355	15-15,359-359[SIL];20-21,354-353[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	AGGAGGAGGAGAAGAAGAAGG&CUUUCUUCUUCUUCGCUUCGG	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1025_c0_g1_364_TPlot.pdf
TRINITY_DN1025_c0_g1:365	si_s89	TRINITY_DN1025_c0_g1	354	374	365	-35.30	-25.90	0.73371104815864	5	2-15,373-360;17-20,358-355	1-1,374-374[UP5];16-16,359-359[SIL];21-21,354-354[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	GGAGGAGGAGAAGAAGAAGGA&CCUUUCUUCUUCUUCGCUUCG	4	0.999497737729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1025_c0_g1_365_TPlot.pdf
TRINITY_DN1025_c0_g1:366	si_s88	TRINITY_DN1025_c0_g1	355	376	366	-34.80	-26.00	0.747126436781609	5	1-2,376-375;3-16,373-360;18-21,358-355	x-x,374-374[BULt];17-17,359-359[SIL]	((((.((((((((((((((.((&))-)))))))))))))).))))	GAGGAGGAGAAGAAGAAGGAGA&UC-CUUUCUUCUUCUUCGCUUC	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1025_c0_g1_366_TPlot.pdf
TRINITY_DN1025_c0_g1:368	si_s71	TRINITY_DN1025_c0_g1	356	378	368	-25.70	-19.00	0.739299610894942	7.5	1-5,378-374;7-17,371-361;18-21,359-356	6-6,373-372[AILt];x-x,360-360[BULt]	((((.(((((((((((..(((((&)))))-.)))))))))))-))))	AGGAGGAGAAGAAGAAGGAGAAG&CUUCU-AUUUUUUUUCUU-UCCU	4	0.999999967315661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1025_c0_g1_368_TPlot.pdf
TRINITY_DN1025_c0_g1:369	si_a786	TRINITY_DN1025_c0_g1	357	379	369	-26.60	-18.20	0.684210526315789	8	1-6,379-374;8-14,371-365;16-21,362-357	7-7,373-372[AILt];15-15,364-363[AILt]	((((((..(((((((..((((((&))))))-.)))))))-.))))))	GGAGGAGAAGAAGAAGGAGAAGA&UCUUCU-AUUUUUCU-AUUUUCC	4	0.999999999830839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1025_c0_g1_369_TPlot.pdf
TRINITY_DN1025_c0_g1:373	si_s81	TRINITY_DN1025_c0_g1	362	382	373	-28.90	-23.60	0.816608996539792	5	1-8,382-375;10-21,373-362	9-9,374-374[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AGAAGAAGAAGGAGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1025_c0_g1_373_TPlot.pdf
TRINITY_DN1025_c0_g1:374	si_s80	TRINITY_DN1025_c0_g1	363	383	374	-28.20	-23.20	0.822695035460993	5	1-9,383-375;11-21,373-363	10-10,374-374[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GAAGAAGAAGGAGAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1025_c0_g1_374_TPlot.pdf
TRINITY_DN1025_c0_g1:377	si_s77	TRINITY_DN1025_c0_g1	366	386	377	-25.50	-20.00	0.784313725490196	5.5	1-12,386-375;14-21,373-366	13-13,374-374[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAAGAAGGAGAAGAAGAAGGA&UUUUUUUUCUUUCCUUUCUUC	4	0.999999829576798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1025_c0_g1_377_TPlot.pdf
TRINITY_DN1025_c0_g1:379	si_s75	TRINITY_DN1025_c0_g1	368	388	379	-24.00	-15.90	0.6625	8	3-14,386-375;16-21,373-368	1-2,388-387[UP5];15-15,374-374[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAGGAGAAGAAGAAGGACA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1025_c0_g1_379_TPlot.pdf
TRINITY_DN10260_c0_g1:1275	si_a296	TRINITY_DN10260_c0_g1	1264	1285	1275	-26.80	-18.30	0.682835820895522	7	1-2,1285-1284;3-20,1282-1265	x-x,1283-1283[BULt];21-21,1264-1264[UP3]	.((((((((((((((((((.((&))-)))))))))))))))))).	GAGGUGAAUUUUUUUUGAGCUC&GA-UUUAAAAAAGAUUCGCUUG	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a296_TRINITY_DN10260_c0_g1_1275_TPlot.pdf
TRINITY_DN10261_c0_g1:2388	si_s129	TRINITY_DN10261_c0_g1	2377	2397	2388	-29.40	-19.40	0.659863945578231	7	1-11,2397-2387;13-14,2386-2385;15-18,2383-2380	12-12,x-x[BULq];x-x,2384-2384[BULt];19-21,2379-2377[UP3]	...((((.((-(((((((((((&))))))))))).))-))))...	ACCGAUUCGA-UCAGCUCUUCU&AGAAGAGUUGAAUC-AAUCAAA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s129_TRINITY_DN10261_c0_g1_2388_TPlot.pdf
TRINITY_DN10264_c0_g1:3686	si_a206	TRINITY_DN10264_c0_g1	3675	3695	3686	-23.90	-17.20	0.719665271966527	8	1-14,3695-3682	15-21,3681-3675[UP3]	.......((((((((((((((&)))))))))))))).......	GCGAACCAGUCGGUUUAUUAG&CUAAUAAAUCGACUAAUUAAA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a206_TRINITY_DN10264_c0_g1_3686_TPlot.pdf
TRINITY_DN10264_c0_g1:3687	si_a205	TRINITY_DN10264_c0_g1	3676	3696	3687	-24.70	-17.80	0.720647773279352	8	2-15,3695-3682	1-1,3696-3696[UP5];16-21,3681-3676[UP3]	......((((((((((((((.&.))))))))))))))......	CGAACCAGUCGGUUUAUUAGC&ACUAAUAAAUCGACUAAUUAA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN10264_c0_g1_3687_TPlot.pdf
TRINITY_DN10264_c0_g1:3689	si_a203	TRINITY_DN10264_c0_g1	3678	3698	3689	-26.90	-17.80	0.661710037174721	10	4-17,3695-3682	1-3,3698-3696[UP5];18-21,3681-3678[UP3]	....((((((((((((((...&...))))))))))))))....	AACCAGUCGGUUUAUUAGCUG&UCACUAAUAAAUCGACUAAUU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN10264_c0_g1_3689_TPlot.pdf
TRINITY_DN10264_c0_g1:3690	si_a202	TRINITY_DN10264_c0_g1	3679	3699	3690	-27.00	-17.80	0.659259259259259	10.5	5-18,3695-3682	1-4,3699-3696[UP5];19-21,3681-3679[UP3]	...((((((((((((((....&....))))))))))))))...	ACCAGUCGGUUUAUUAGCUGC&UUCACUAAUAAAUCGACUAAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN10264_c0_g1_3690_TPlot.pdf
TRINITY_DN10264_c0_g1:3691	si_a201	TRINITY_DN10264_c0_g1	3680	3701	3691	-28.60	-19.60	0.685314685314685	6.5	1-2,3701-3700;4-5,3698-3697;6-19,3695-3682	3-3,3699-3699[SIL];x-x,3696-3696[BULt];20-21,3681-3680[UP3]	..((((((((((((((.((.((&)).))-))))))))))))))..	CCAGUCGGUUUAUUAGCUGCAC&GUUCA-CUAAUAAAUCGACUAA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN10264_c0_g1_3691_TPlot.pdf
TRINITY_DN10264_c0_g1:3692	si_a200	TRINITY_DN10264_c0_g1	3681	3702	3692	-29.20	-20.60	0.705479452054795	5.5	1-3,3702-3700;5-6,3698-3697;7-20,3695-3682	4-4,3699-3699[SIL];x-x,3696-3696[BULt];21-21,3681-3681[UP3]	.((((((((((((((.((.(((&))).))-)))))))))))))).	CAGUCGGUUUAUUAGCUGCACA&UGUUCA-CUAAUAAAUCGACUA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN10264_c0_g1_3692_TPlot.pdf
TRINITY_DN10264_c0_g1:3694	si_a198	TRINITY_DN10264_c0_g1	3683	3704	3694	-32.20	-22.00	0.683229813664596	5.5	2-5,3703-3700;7-8,3698-3697;9-21,3695-3683	1-1,3704-3704[UP5];6-6,3699-3699[SIL];x-x,3696-3696[BULt]	(((((((((((((.((.((((.&.)))).))-)))))))))))))	GUCGGUUUAUUAGCUGCACAGU&CCUGUUCA-CUAAUAAAUCGAC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a198_TRINITY_DN10264_c0_g1_3694_TPlot.pdf
TRINITY_DN10264_c0_g1:3937	si_s559	TRINITY_DN10264_c0_g1	3926	3947	3937	-27.80	-18.90	0.679856115107914	7.5	2-8,3946-3940;9-19,3938-3928	1-1,3947-3947[UP5];x-x,3939-3939[BULt];20-21,3927-3926[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	GAUGUCCUGGAAACUAUUGAUG&AAUUAAUA-UUUUCGGGACAAG	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN10264_c0_g1_3937_TPlot.pdf
TRINITY_DN10266_c0_g2:2967	si_a787	TRINITY_DN10266_c0_g2	2955	2976	2967	-26.30	-17.60	0.669201520912548	9	1-5,2976-2972;7-14,2970-2963;15-20,2961-2956	6-6,2971-2971[SIL];x-x,2962-2962[BULt];21-21,2955-2955[UP3]	.((((((.((((((((.(((((&))))).))))))))-)))))).	CGGGAAGCUAGGGAGAGAGAGG&CUUCUAUUUUUCUA-UUUUCCA	4	0.999999999999884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN10266_c0_g2_2967_TPlot.pdf
TRINITY_DN10266_c0_g2:2968	si_s79	TRINITY_DN10266_c0_g2	2956	2977	2968	-26.20	-21.20	0.809160305343511	7.5	1-14,2977-2964;16-21,2961-2956	15-15,2963-2962[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	GGGAAGCUAGGGAGAGAGAGGA&UUUUUUCUUUCCUU-UCUUCUU	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10266_c0_g2_2968_TPlot.pdf
TRINITY_DN10266_c0_g2:2969	si_a785	TRINITY_DN10266_c0_g2	2958	2978	2969	-25.90	-18.40	0.71042471042471	7	1-7,2978-2972;9-16,2970-2963;18-21,2961-2958	8-8,2971-2971[SIL];17-17,2962-2962[SIL]	((((.((((((((.(((((((&))))))).)))))))).))))	GAAGCUAGGGAGAGAGAGGAG&CUCUUCUAUUUUUCUAUUUUC	4	0.999999962234629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN10266_c0_g2_2969_TPlot.pdf
TRINITY_DN10266_c0_g2:2970	si_s77	TRINITY_DN10266_c0_g2	2958	2979	2970	-25.50	-21.40	0.83921568627451	7.5	1-16,2979-2964;18-21,2961-2958	17-17,2963-2962[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	GAAGCUAGGGAGAGAGAGGAGA&UUUUUUUUCUUUCCUU-UCUUC	2	0.974879224210294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10266_c0_g2_2970_TPlot.pdf
TRINITY_DN10266_c0_g2:2971	si_s85	TRINITY_DN10266_c0_g2	2961	2980	2971	-33.80	-24.90	0.736686390532544	6	1-11,2980-2970;13-18,2969-2964;20-21,2962-2961	12-12,x-x[BULq];19-19,2963-2963[SIL]	((.((((((-(((((((((((&))))))))))).)))))).))	GCUAGGGAG-AGAGAGGAGAG&CUUUCCUUUCUUCUUCUUCGC	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN10266_c0_g2_2971_TPlot.pdf
TRINITY_DN10266_c0_g2:2973	si_s88	TRINITY_DN10266_c0_g2	2958	2982	2973	-34.80	-25.30	0.727011494252874	8.5	2-11,2981-2972;12-16,2970-2966;17-21,2962-2958	1-1,2982-2982[UP5];x-x,2971-2971[BULt];x-x,2965-2963[BULt]	(((((...(((((.((((((((((.&.))))))))))-)))))---)))))	GAAGCUAGGGAGAGAGAGGAGAGGG&UCCUUUCUUCU-UCUUC---GCUUC	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN10266_c0_g2_2973_TPlot.pdf
TRINITY_DN10266_c0_g2:2974	si_s73	TRINITY_DN10266_c0_g2	2963	2983	2974	-24.00	-19.80	0.825	9	1-3,2983-2981;5-20,2979-2964	4-4,2980-2980[SIL];21-21,2963-2963[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	UAGGGAGAGAGAGGAGAGGGA&UCUAUUUUUUUUCUUUCCUUU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10266_c0_g2_2974_TPlot.pdf
TRINITY_DN10266_c0_g2:2975	si_s72	TRINITY_DN10266_c0_g2	2964	2984	2975	-24.10	-20.00	0.829875518672199	9	2-4,2983-2981;6-21,2979-2964	1-1,2984-2984[UP5];5-5,2980-2980[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AGGGAGAGAGAGGAGAGGGAG&UUCUAUUUUUUUUCUUUCCUU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10266_c0_g2_2975_TPlot.pdf
TRINITY_DN10266_c0_g2:2976	si_s80	TRINITY_DN10266_c0_g2	2966	2985	2976	-28.20	-24.10	0.854609929078014	6	1-16,2985-2970;18-21,2969-2966	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	GGAG-AGAGAGGAGAGGGAGA&UUUUUCUUUCCUUUCUUCUUC	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10266_c0_g2_2976_TPlot.pdf
TRINITY_DN10266_c0_g2:2977	si_s70	TRINITY_DN10266_c0_g2	2966	2985	2977	-25.80	-20.10	0.779069767441861	9	2-6,2984-2980;8-21,2979-2966	1-1,2985-2985[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	GGAGAGAGAGGAGA-GGGAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10266_c0_g2_2977_TPlot.pdf
TRINITY_DN10266_c0_g2:2978	si_a784	TRINITY_DN10266_c0_g2	2967	2987	2978	-24.70	-16.10	0.651821862348178	9.5	2-8,2986-2980;10-16,2978-2972;18-21,2970-2967	1-1,2987-2987[UP5];9-9,2979-2979[SIL];17-17,2971-2971[SIL]	((((.(((((((.(((((((.&.))))))).))))))).))))	GAGAGAGAGGAGAGGGAGAGG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10266_c0_g2_2978_TPlot.pdf
TRINITY_DN10266_c0_g2:2980	si_s76	TRINITY_DN10266_c0_g2	2969	2989	2980	-23.60	-22.20	0.940677966101695	10	3-21,2987-2969	1-2,2989-2988[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAGAGAGGAGAGGGAGAGGGA&AUUUUUUUUCUUUCCUUUCUU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10266_c0_g2_2980_TPlot.pdf
TRINITY_DN10266_c0_g2:2982	si_s74	TRINITY_DN10266_c0_g2	2971	2991	2982	-25.00	-19.80	0.792	13	5-21,2987-2971	1-4,2991-2988[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGAGGAGAGGGAGAGGGAAA&CUAUUUUUUUUCUUUCCUUUC	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN10266_c0_g2_2982_TPlot.pdf
TRINITY_DN10266_c0_g2:2983	si_s79	TRINITY_DN10266_c0_g2	2971	2992	2983	-26.20	-22.30	0.851145038167939	7.5	2-12,2991-2981;13-21,2979-2971	1-1,2992-2992[UP5];x-x,2980-2980[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	GAGAGGAGAGGGAGAGGGAAAG&UUUUUUCUUUCC-UUUCUUCUU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10266_c0_g2_2983_TPlot.pdf
TRINITY_DN10266_c0_g2:3007	si_s76	TRINITY_DN10266_c0_g2	2996	3016	3007	-23.60	-19.60	0.830508474576271	6.5	2-16,3015-3001;18-20,2999-2997	1-1,3016-3016[UP5];17-17,3000-3000[SIL];21-21,2996-2996[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	CAGACGGGAGAGAGAAGAAAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10266_c0_g2_3007_TPlot.pdf
TRINITY_DN10266_c0_g2:3008	si_s75	TRINITY_DN10266_c0_g2	2997	3017	3008	-24.00	-19.60	0.816666666666667	7	3-17,3015-3001;19-21,2999-2997	1-2,3017-3016[UP5];18-18,3000-3000[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	AGACGGGAGAGAGAAGAAAGG&UAUUUUUUUUCUUUCCUUUCU	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10266_c0_g2_3008_TPlot.pdf
TRINITY_DN10266_c0_g2:3010	si_s73	TRINITY_DN10266_c0_g2	2999	3019	3010	-24.00	-19.60	0.816666666666667	8	1-3,3019-3017;5-19,3015-3001	4-4,3016-3016[SIL];20-21,3000-2999[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	ACGGGAGAGAGAAGAAAGGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10266_c0_g2_3010_TPlot.pdf
TRINITY_DN10269_c0_g1:198	si_a892	TRINITY_DN10269_c0_g1	187	207	198	-21.30	-13.90	0.652582159624413	10.5	4-18,204-190	1-3,207-205[UP5];19-21,189-187[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACAAUUUAUUGUUACUGUUGU&AAUAUAGUAAUAAUAAGUAAU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN10269_c0_g1_198_TPlot.pdf
TRINITY_DN10269_c0_g1:200	si_a890	TRINITY_DN10269_c0_g1	189	210	200	-23.80	-16.20	0.680672268907563	7	2-6,209-205;7-20,203-190	1-1,210-210[UP5];x-x,204-204[BULt];21-21,189-189[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	AAUUUAUUGUUACUGUUGUUGU&UCAAUA-UAGUAAUAAUAAGUA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN10269_c0_g1_200_TPlot.pdf
TRINITY_DN10269_c0_g1:520	si_a892	TRINITY_DN10269_c0_g1	509	529	520	-21.30	-13.90	0.652582159624413	10.5	4-18,526-512	1-3,529-527[UP5];19-21,511-509[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACAAUUUAUUGUUACUGUUGU&AAUAUAGUAAUAAUAAGUAAU	2	0.987331012997792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN10269_c0_g1_520_TPlot.pdf
TRINITY_DN10269_c0_g1:522	si_a890	TRINITY_DN10269_c0_g1	511	532	522	-23.80	-16.20	0.680672268907563	7	2-6,531-527;7-20,525-512	1-1,532-532[UP5];x-x,526-526[BULt];21-21,511-511[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	AAUUUAUUGUUACUGUUGUUGU&UCAAUA-UAGUAAUAAUAAGUA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN10269_c0_g1_522_TPlot.pdf
TRINITY_DN1026_c0_g1:687	si_a757	TRINITY_DN1026_c0_g1	676	695	687	-33.10	-22.10	0.667673716012085	7	2-8,694-688;10-19,687-678	1-1,695-695[UP5];9-9,x-x[BULq];20-21,677-676[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	ACUUAAAAGCCU-AAGGAGGC&ACCUCCUUUGGGUUUUUGAUU	4	0.99999997551886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1026_c0_g1_687_TPlot.pdf
TRINITY_DN1026_c0_g2:1015	si_s132	TRINITY_DN1026_c0_g2	1004	1024	1015	-28.40	-19.20	0.676056338028169	7.5	1-15,1024-1010	16-21,1009-1004[UP3]	......(((((((((((((((&)))))))))))))))......	UUAUCGGGUUGAUUCAACUUU&AGAGUUGAAUCAAUCAAAAAC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN1026_c0_g2_1015_TPlot.pdf
TRINITY_DN1026_c0_g2:1016	si_s131	TRINITY_DN1026_c0_g2	1005	1025	1016	-26.70	-20.10	0.752808988764045	6.5	1-16,1025-1010	17-21,1009-1005[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUCGGGUUGAUUCAACUUUU&AAGAGUUGAAUCAAUCAAAAA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN1026_c0_g2_1016_TPlot.pdf
TRINITY_DN1026_c0_g2:1018	si_s129	TRINITY_DN1026_c0_g2	1007	1027	1018	-29.40	-22.00	0.748299319727891	5.5	1-18,1027-1010	19-21,1009-1007[UP3]	...((((((((((((((((((&))))))))))))))))))...	UCGGGUUGAUUCAACUUUUUU&AGAAGAGUUGAAUCAAUCAAA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s129_TRINITY_DN1026_c0_g2_1018_TPlot.pdf
TRINITY_DN1026_c0_g2:1019	si_s128	TRINITY_DN1026_c0_g2	1008	1028	1019	-29.80	-22.00	0.738255033557047	5.5	2-19,1027-1010	1-1,1028-1028[UP5];20-21,1009-1008[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CGGGUUGAUUCAACUUUUUUC&UAGAAGAGUUGAAUCAAUCAA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s128_TRINITY_DN1026_c0_g2_1019_TPlot.pdf
TRINITY_DN1026_c0_g2:1020	si_s127	TRINITY_DN1026_c0_g2	1009	1034	1020	-29.90	-23.30	0.779264214046823	11.5	1-8,1034-1027;9-20,1021-1010	x-x,1026-1022[BULt];21-21,1009-1009[UP3]	.((((((((((((.....((((((((&))))))))-----)))))))))))).	GGGUUGAUUCAACUUUUUUCUUCUAU&AUAGAAGA-----GUUGAAUCAAUCA	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s127_TRINITY_DN1026_c0_g2_1020_TPlot.pdf
TRINITY_DN1026_c0_g2:1021	si_s126	TRINITY_DN1026_c0_g2	1010	1035	1021	-29.20	-23.10	0.791095890410959	11.5	2-9,1034-1027;10-21,1021-1010	1-1,1035-1035[UP5];x-x,1026-1022[BULt]	((((((((((((.....((((((((.&.))))))))-----))))))))))))	GGUUGAUUCAACUUUUUUCUUCUAUA&AAUAGAAGA-----GUUGAAUCAAUC	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN1026_c0_g2_1021_TPlot.pdf
TRINITY_DN1026_c0_g2:1027	si_s125	TRINITY_DN1026_c0_g2	1011	1036	1027	-27.20	-20.80	0.764705882352941	13.5	3-10,1034-1027;11-21,1021-1011	1-2,1036-1035[UP5];x-x,1026-1022[BULt]	(((((((((((.....((((((((..&..))))))))-----)))))))))))	GUUGAUUCAACUUUUUUCUUCUAUAU&AAAUAGAAGA-----GUUGAAUCAAU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN1026_c0_g2_1027_TPlot.pdf
TRINITY_DN1026_c0_g2:1028	si_s124	TRINITY_DN1026_c0_g2	1012	1037	1028	-27.10	-19.30	0.712177121771218	15	4-11,1034-1027;12-21,1021-1012	1-3,1037-1035[UP5];x-x,1026-1022[BULt]	((((((((((.....((((((((...&...))))))))-----))))))))))	UUGAUUCAACUUUUUUCUUCUAUAUU&AAAAUAGAAGA-----GUUGAAUCAA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN1026_c0_g2_1028_TPlot.pdf
TRINITY_DN1026_c0_g2:1029	si_s123	TRINITY_DN1026_c0_g2	1013	1038	1029	-27.00	-18.50	0.685185185185185	17	5-12,1034-1027;13-21,1021-1013	1-4,1038-1035[UP5];x-x,1026-1022[BULt]	(((((((((.....((((((((....&....))))))))-----)))))))))	UGAUUCAACUUUUUUCUUCUAUAUUU&AAAAAUAGAAGA-----GUUGAAUCA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN1026_c0_g2_1029_TPlot.pdf
TRINITY_DN1026_c0_g2:1030	si_s122	TRINITY_DN1026_c0_g2	1014	1040	1030	-28.30	-19.70	0.696113074204947	7	1-5,1040-1036;6-13,1034-1027;14-21,1021-1014	x-x,1035-1035[BULt];x-x,1026-1022[BULt]	((((((((.....((((((((.(((((&)))))-))))))))-----))))))))	GAUUCAACUUUUUUCUUCUAUAUUUUC&GAAAA-AUAGAAGA-----GUUGAAUC	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN1026_c0_g2_1030_TPlot.pdf
TRINITY_DN1026_c0_g2:1031	si_s121	TRINITY_DN1026_c0_g2	1015	1041	1031	-27.00	-18.10	0.67037037037037	7	1-6,1041-1036;7-14,1034-1027;15-21,1021-1015	x-x,1035-1035[BULt];x-x,1026-1022[BULt]	(((((((.....((((((((.((((((&))))))-))))))))-----)))))))	AUUCAACUUUUUUCUUCUAUAUUUUCU&AGAAAA-AUAGAAGA-----GUUGAAU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN1026_c0_g2_1031_TPlot.pdf
TRINITY_DN1026_c0_g2:643	si_s111	TRINITY_DN1026_c0_g2	632	652	643	-24.80	-17.90	0.721774193548387	4.5	1-6,652-647;8-19,645-634	7-7,646-646[SIL];20-21,633-632[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	CAUGUUUUUCUAUUAUCCAAU&AUUGGAAAAUAGAAAAAUAGA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN1026_c0_g2_643_TPlot.pdf
TRINITY_DN1026_c0_g2:644	si_s110	TRINITY_DN1026_c0_g2	633	653	644	-25.80	-19.50	0.755813953488372	4	1-7,653-647;9-20,645-634	8-8,646-646[SIL];21-21,633-633[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AUGUUUUUCUAUUAUCCAAUU&GAUUGGAAAAUAGAAAAAUAG	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s110_TRINITY_DN1026_c0_g2_644_TPlot.pdf
TRINITY_DN1026_c0_g2:645	si_s109	TRINITY_DN1026_c0_g2	634	654	645	-26.50	-19.60	0.739622641509434	4.5	2-8,653-647;10-21,645-634	1-1,654-654[UP5];9-9,646-646[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	UGUUUUUCUAUUAUCCAAUUA&GGAUUGGAAAAUAGAAAAAUA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN1026_c0_g2_645_TPlot.pdf
TRINITY_DN1026_c0_g2:646	si_s108	TRINITY_DN1026_c0_g2	635	655	646	-27.60	-18.50	0.670289855072464	6.5	3-9,653-647;11-21,645-635	1-2,655-654[UP5];10-10,646-646[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GUUUUUCUAUUAUCCAAUUAA&CGGAUUGGAAAAUAGAAAAAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN1026_c0_g2_646_TPlot.pdf
TRINITY_DN10271_c0_g1:4583	si_s897	TRINITY_DN10271_c0_g1	4572	4592	4583	-31.30	-20.60	0.65814696485623	7.5	2-2,4591-4591;4-13,4589-4580;16-19,4577-4574	1-1,4592-4592[UP5];3-3,4590-4590[SIL];14-15,4579-4578[SIL];20-21,4573-4572[UP3]	..((((..((((((((((.(.&.).))))))))))..))))..	AAGAGAAGGAAGAGAAAGGCG&AGGCUUUCUCUUCAAUUUCAA	4	0.999999803083204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN10271_c0_g1_4583_TPlot.pdf
TRINITY_DN10271_c0_g1:516	si_a63	TRINITY_DN10271_c0_g1	505	526	516	-30.20	-22.30	0.73841059602649	8.5	3-7,524-520;8-21,518-505	1-2,526-525[UP5];x-x,519-519[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	GGCGAUUUGGAAGAUGGCGACU&ACUCGCU-UCUUUCAAAUUGUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN10271_c0_g1_516_TPlot.pdf
TRINITY_DN10271_c0_g1:517	si_a62	TRINITY_DN10271_c0_g1	506	527	517	-32.20	-21.80	0.677018633540373	9.5	4-8,524-520;9-21,518-506	1-3,527-525[UP5];x-x,519-519[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GCGAUUUGGAAGAUGGCGACUA&GACUCGCU-UCUUUCAAAUUGU	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN10271_c0_g1_517_TPlot.pdf
TRINITY_DN10271_c0_g1:541	si_a746	TRINITY_DN10271_c0_g1	528	552	541	-41.30	-27.60	0.668280871670702	9.5	2-5,551-548;6-17,545-534;18-21,531-528	1-1,552-552[UP5];x-x,547-546[BULt];x-x,533-532[BULt]	((((..((((((((((((..((((.&.))))--))))))))))))--))))	CGAAUUGGAGGUUCGUGGAACCGGA&CCUGG--CCAUGAACCUCC--UUUG	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN10271_c0_g1_541_TPlot.pdf
TRINITY_DN10273_c0_g1:2115	si_a734	TRINITY_DN10273_c0_g1	2102	2124	2115	-42.40	-34.30	0.808962264150943	4.5	1-12,2124-2113;13-15,2111-2109;16-21,2107-2102	x-x,2112-2112[BULt];x-x,2108-2108[BULt]	((((((.(((.((((((((((((&))))))))))))-)))-))))))	AUGGUCAAGGUGGUGAAGAUGCC&GGCAUCUUUACC-CCU-GGCCAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN10273_c0_g1_2115_TPlot.pdf
TRINITY_DN10274_c0_g1:1058	si_a353	TRINITY_DN10274_c0_g1	1047	1067	1058	-24.00	-16.50	0.6875	15	8-21,1060-1047	1-7,1067-1061[UP5]	((((((((((((((.......&.......))))))))))))))	CGGUCGGGAUAGAAGGCGGAG&AUAUUAAUUCUAUUUUGAUCG	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN10274_c0_g1_1058_TPlot.pdf
TRINITY_DN10274_c0_g1:1330	si_s135	TRINITY_DN10274_c0_g1	1316	1339	1330	-30.50	-20.60	0.675409836065574	6	1-4,1339-1336;6-18,1334-1322;19-21,1318-1316	5-5,1335-1335[SIL];x-x,1321-1319[BULt]	(((...(((((((((((((.((((&)))).)))))))))))))---)))	UGGAAUGUUUUUGAUUGGUACAAC&GUUGAAUCAAUCAAAAAC---CCA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s135_TRINITY_DN10274_c0_g1_1330_TPlot.pdf
TRINITY_DN10274_c0_g1:1331	si_s134	TRINITY_DN10274_c0_g1	1317	1340	1331	-30.50	-20.20	0.662295081967213	6	1-5,1340-1336;7-19,1334-1322;20-21,1318-1317	6-6,1335-1335[SIL];x-x,1321-1319[BULt]	((...(((((((((((((.(((((&))))).)))))))))))))---))	GGAAUGUUUUUGAUUGGUACAACU&AGUUGAAUCAAUCAAAAAC---CC	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s134_TRINITY_DN10274_c0_g1_1331_TPlot.pdf
TRINITY_DN10274_c0_g1:1333	si_s132	TRINITY_DN10274_c0_g1	1322	1342	1333	-28.40	-21.60	0.76056338028169	5	2-7,1341-1336;9-21,1334-1322	1-1,1342-1342[UP5];8-8,1335-1335[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GUUUUUGAUUGGUACAACUUC&AGAGUUGAAUCAAUCAAAAAC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN10274_c0_g1_1333_TPlot.pdf
TRINITY_DN10274_c0_g1:1334	si_s131	TRINITY_DN10274_c0_g1	1323	1343	1334	-26.70	-18.70	0.700374531835206	7	3-8,1341-1336;10-21,1334-1323	1-2,1343-1342[UP5];9-9,1335-1335[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UUUUUGAUUGGUACAACUUCG&AAGAGUUGAAUCAAUCAAAAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN10274_c0_g1_1334_TPlot.pdf
TRINITY_DN10274_c0_g1:302	si_s152	TRINITY_DN10274_c0_g1	291	312	302	-42.00	-29.90	0.711904761904762	9	1-3,312-310;6-13,306-299;15-20,297-292	4-5,309-307[AILt];14-14,298-298[SIL];21-21,291-291[UP3]	.((((((.((((((((...(((&)))-..)))))))).)))))).	CGGCCAUCAGCCUCCUGGCGGG&CCC-AAAGGAGGUUCAUGGCCA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s152_TRINITY_DN10274_c0_g1_302_TPlot.pdf
TRINITY_DN10274_c0_g1:4048	si_a665	TRINITY_DN10274_c0_g1	4034	4057	4048	-29.60	-20.20	0.682432432432432	10.5	3-14,4055-4044;15-18,4040-4037	1-2,4057-4056[UP5];x-x,4043-4041[BULt];19-21,4036-4034[UP3]	...((((...((((((((((((..&..))))))))))))---))))...	AGGGAGGCAAAAUCAAUGGGCAAG&AAUGCCUAUUGAUU---CCUUAUU	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN10274_c0_g1_4048_TPlot.pdf
TRINITY_DN10274_c0_g1:4520	si_s75	TRINITY_DN10274_c0_g1	4509	4529	4520	-24.00	-16.48	0.686666666666667	10	2-6,4528-4524;10-21,4520-4509	1-1,4529-4529[UP5];7-9,4523-4521[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	AGAGGGGAAAGAUACAGAGUC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10274_c0_g1_4520_TPlot.pdf
TRINITY_DN10275_c0_g1:1140	si_a788	TRINITY_DN10275_c0_g1	1132	1149	1140	-24.80	-16.60	0.669354838709677	5.5	1-12,1149-1138;16-21,1137-1132	13-15,x-x[BULq]	((((((---((((((((((((&))))))))))))...))))))	UUGGGA---AGAAGAAUAGGA&UUCUAUUUUUCUAUUUUCCAA	2	0.999999931988794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN10275_c0_g1_1140_TPlot.pdf
TRINITY_DN10275_c0_g1:3628	si_a350	TRINITY_DN10275_c0_g1	3617	3638	3628	-20.30	-14.60	0.719211822660099	10.5	4-8,3635-3631;9-21,3629-3617	1-3,3638-3636[UP5];x-x,3630-3630[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	UCAAAGUAGGGUUCAGUAUGCU&AAAAUAUU-AAUUCUAUUUUGA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN10275_c0_g1_3628_TPlot.pdf
TRINITY_DN10276_c0_g1:829	si_s437	TRINITY_DN10276_c0_g1	818	838	829	-19.70	-13.00	0.65989847715736	8	4-9,835-830;11-20,828-819	1-3,838-836[UP5];10-10,829-829[SIL];21-21,818-818[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	GUAUAUAUAAUUUGUAAUCGU&AUAAUUACAUAUUAUAUAUAA	2	0.999560141918521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN10276_c0_g1_829_TPlot.pdf
TRINITY_DN10276_c0_g1:830	si_s436	TRINITY_DN10276_c0_g1	819	839	830	-19.60	-12.80	0.653061224489796	9	5-10,835-830;12-21,828-819	1-4,839-836[UP5];11-11,829-829[SIL]	((((((((((.((((((....&....)))))).))))))))))	UAUAUAUAAUUUGUAAUCGUA&AAUAAUUACAUAUUAUAUAUA	4	0.999999656177692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN10276_c0_g1_830_TPlot.pdf
TRINITY_DN10277_c0_g1:1022	si_a757	TRINITY_DN10277_c0_g1	1010	1031	1022	-33.10	-21.82	0.659214501510574	9.5	3-14,1029-1018;18-21,1013-1010	1-2,1031-1030[UP5];15-17,1017-1014[AILt]	((((....((((((((((((..&..))))))))))))-...))))	GGUCCCGCAGCCCAGAGGAGAC&ACCUCCUUUGGGUU-UUUGAUU	4	0.999999999001661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN10277_c0_g1_1022_TPlot.pdf
TRINITY_DN10278_c0_g1:1336	si_s803	TRINITY_DN10278_c0_g1	1321	1345	1336	-26.00	-17.00	0.653846153846154	11.5	4-14,1342-1332;15-21,1327-1321	1-3,1345-1343[UP5];x-x,1331-1328[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	AAGAGGUUGAAAAUGAAGAUGACAG&AUUUUAUCUUCGUU----ACCUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN10278_c0_g1_1336_TPlot.pdf
TRINITY_DN10278_c0_g1:1340	si_s799	TRINITY_DN10278_c0_g1	1325	1351	1340	-30.00	-19.90	0.663333333333333	10.5	1-7,1351-1345;8-18,1342-1332;19-21,1327-1325	x-x,1344-1343[BULt];x-x,1331-1328[BULt]	(((....(((((((((((..(((((((&)))))))--)))))))))))----)))	GGUUGAAAAUGAAGAUGACAGAUACGA&UCGUAUU--UUAUCUUCGUU----ACC	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN10278_c0_g1_1340_TPlot.pdf
TRINITY_DN10278_c0_g1:1348	si_s793	TRINITY_DN10278_c0_g1	1335	1357	1348	-30.50	-21.70	0.711475409836065	10	5-13,1353-1345;14-21,1342-1335	1-4,1357-1354[UP5];x-x,1344-1343[BULt]	((((((((..(((((((((....&....)))))))))--))))))))	GAAGAUGACAGAUACGAGCGACU&ACAAGCUCGUAUU--UUAUCUUC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN10278_c0_g1_1348_TPlot.pdf
TRINITY_DN10278_c0_g1:2455	si_a478	TRINITY_DN10278_c0_g1	2444	2464	2455	-21.30	-14.80	0.694835680751174	8.5	3-13,2462-2452;15-19,2450-2446	1-2,2464-2463[UP5];14-14,2451-2451[SIL];20-21,2445-2444[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	UCGUUCUUUGUGACAAUAACU&AAUUAUUGUUAUAUAGAAUAU	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN10278_c0_g1_2455_TPlot.pdf
TRINITY_DN10278_c0_g1:2456	si_a477	TRINITY_DN10278_c0_g1	2445	2465	2456	-21.50	-14.80	0.688372093023256	9	4-14,2462-2452;16-20,2450-2446	1-3,2465-2463[UP5];15-15,2451-2451[SIL];21-21,2445-2445[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	CGUUCUUUGUGACAAUAACUU&UAAUUAUUGUUAUAUAGAAUA	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN10278_c0_g1_2456_TPlot.pdf
TRINITY_DN10278_c0_g1:2457	si_a476	TRINITY_DN10278_c0_g1	2446	2467	2457	-22.90	-17.60	0.768558951965066	5	1-4,2467-2464;5-15,2462-2452;17-21,2450-2446	x-x,2463-2463[BULt];16-16,2451-2451[SIL]	(((((.(((((((((((.((((&))))-))))))))))).)))))	GUUCUUUGUGACAAUAACUUAC&GUAA-UUAUUGUUAUAUAGAAU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN10278_c0_g1_2457_TPlot.pdf
TRINITY_DN10278_c0_g1:2458	si_a475	TRINITY_DN10278_c0_g1	2447	2468	2458	-23.50	-17.00	0.723404255319149	4	1-5,2468-2464;6-16,2462-2452;18-21,2450-2447	x-x,2463-2463[BULt];17-17,2451-2451[SIL]	((((.(((((((((((.(((((&)))))-))))))))))).))))	UUCUUUGUGACAAUAACUUACA&UGUAA-UUAUUGUUAUAUAGAA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN10278_c0_g1_2458_TPlot.pdf
TRINITY_DN10278_c0_g1:2459	si_a474	TRINITY_DN10278_c0_g1	2448	2469	2459	-23.60	-16.20	0.686440677966102	5	2-6,2468-2464;7-17,2462-2452;19-21,2450-2448	1-1,2469-2469[UP5];x-x,2463-2463[BULt];18-18,2451-2451[SIL]	(((.(((((((((((.(((((.&.)))))-))))))))))).)))	UCUUUGUGACAAUAACUUACAC&AUGUAA-UUAUUGUUAUAUAGA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN10278_c0_g1_2459_TPlot.pdf
TRINITY_DN10278_c0_g1:2815	si_s315	TRINITY_DN10278_c0_g1	2801	2824	2815	-31.60	-21.60	0.683544303797468	8.5	3-9,2822-2816;11-13,2814-2812;14-21,2808-2801	1-2,2824-2823[UP5];10-10,2815-2815[SIL];x-x,2811-2809[BULt]	((((((((...(((.(((((((..&..))))))).)))---))))))))	UUGUAACAGACGGACGGACAGACU&AUUCUGUCCUUCU---UGUUACAA	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN10278_c0_g1_2815_TPlot.pdf
TRINITY_DN10278_c1_g1:2438	si_a66	TRINITY_DN10278_c1_g1	2431	2447	2438	-26.70	-17.40	0.651685393258427	8	1-10,2447-2438;15-20,2437-2432	11-14,x-x[BULq];21-21,2431-2431[UP3]	.((((((----((((((((((&))))))))))....)))))).	UGAAGCA----GAAAGAAGCG&CGCUUCUUUCAAAUUGUUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN10278_c1_g1_2438_TPlot.pdf
TRINITY_DN10278_c1_g1:3029	si_s577	TRINITY_DN10278_c1_g1	3018	3038	3029	-26.80	-17.50	0.652985074626866	6	3-13,3036-3026;15-20,3024-3019	1-2,3038-3037[UP5];14-14,3025-3025[SIL];21-21,3018-3018[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	GCUGUGACUUUUUUAUUCCCA&AAGGAAUAAAAAAAUCAUGGA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s577_TRINITY_DN10278_c1_g1_3029_TPlot.pdf
TRINITY_DN10279_c0_g1:2455	si_a502	TRINITY_DN10279_c0_g1	2442	2464	2455	-32.10	-22.20	0.691588785046729	11.5	1-10,2464-2455;11-18,2452-2445	x-x,2454-2453[BULt];19-21,2444-2442[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	CAGCCGAGGAGUUGAUGAAGGAC&GUUUUUCGUC--UUCCUUGGAAU	3	0.999998487030107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN10279_c0_g1_2455_TPlot.pdf
TRINITY_DN10279_c0_g1:2456	si_a501	TRINITY_DN10279_c0_g1	2443	2465	2456	-33.50	-22.50	0.671641791044776	11.5	2-11,2464-2455;12-19,2452-2445	1-1,2465-2465[UP5];x-x,2454-2453[BULt];20-21,2444-2443[UP3]	..((((((((..((((((((((.&.))))))))))--))))))))..	AGCCGAGGAGUUGAUGAAGGACC&CGUUUUUCGUC--UUCCUUGGAA	4	0.999999996828168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN10279_c0_g1_2456_TPlot.pdf
TRINITY_DN10279_c0_g1:2457	si_a500	TRINITY_DN10279_c0_g1	2444	2466	2457	-34.40	-22.50	0.654069767441861	12	3-12,2464-2455;13-20,2452-2445	1-2,2466-2465[UP5];x-x,2454-2453[BULt];21-21,2444-2444[UP3]	.((((((((..((((((((((..&..))))))))))--)))))))).	GCCGAGGAGUUGAUGAAGGACCU&UCGUUUUUCGUC--UUCCUUGGA	3	0.999999999988202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN10279_c0_g1_2457_TPlot.pdf
TRINITY_DN10279_c0_g1:2505	si_a436	TRINITY_DN10279_c0_g1	2495	2514	2505	-33.80	-23.50	0.695266272189349	5	1-7,2514-2508;9-13,2506-2502;15-20,2501-2496	8-8,2507-2507[SIL];14-14,x-x[BULq];21-21,2495-2495[UP3]	.((((((-(((((.(((((((&))))))).))))).)))))).	CUGUUUC-UAUCCCACGGAUC&GAUCCGUUGGAUAUGAGAUAA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a436_TRINITY_DN10279_c0_g1_2505_TPlot.pdf
TRINITY_DN10279_c0_g1:2934	si_a532	TRINITY_DN10279_c0_g1	2924	2943	2934	-40.10	-26.80	0.668329177057357	8	2-6,2942-2938;8-10,2936-2934;12-19,2933-2926	1-1,2943-2943[UP5];7-7,2937-2937[SIL];11-11,x-x[BULq];20-21,2925-2924[UP3]	..((((((((-(((.(((((.&.))))).))).))))))))..	CCGAGCUGAU-GCUGGCGUGG&ACACGCGAGCGAUCGGUUCAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN10279_c0_g1_2934_TPlot.pdf
TRINITY_DN10279_c0_g1:2935	si_a277	TRINITY_DN10279_c0_g1	2923	2944	2935	-36.40	-23.70	0.651098901098901	10.5	1-6,2944-2939;9-9,2936-2936;12-14,2933-2931;15-21,2929-2923	7-8,2938-2937[SIL];10-11,2935-2934[SIL];x-x,2930-2930[BULt]	(((((((.(((..(..((((((&))))))..)..)))-)))))))	UCCGAGCUGAUGCUGGCGUGGG&CCUACGAAAAGAUC-GCUUGGA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a277_TRINITY_DN10279_c0_g1_2935_TPlot.pdf
TRINITY_DN1027_c0_g1:10253	si_s601	TRINITY_DN1027_c0_g1	10242	10261	10253	-28.30	-20.00	0.706713780918728	8	1-5,10261-10257;7-16,10256-10247	6-6,x-x[BULq];17-21,10246-10242[UP3]	.....((((((((((-(((((&))))).)))))))))).....	CUCCUGAGGAUUCGC-UGGAU&AUCCAAGCGAAUCUUUUUUAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN1027_c0_g1_10253_TPlot.pdf
TRINITY_DN1027_c0_g1:4257	si_s77	TRINITY_DN1027_c0_g1	4243	4266	4257	-25.50	-17.24	0.676078431372549	10	1-12,4266-4255;14-21,4250-4243	13-13,4254-4251[AILt]	((((((((....((((((((((((&))))))))))))---.))))))))	GAAGAAAGUAGCGGAGAAGAAAAA&UUUUUUUUCUUU---CCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1027_c0_g1_4257_TPlot.pdf
TRINITY_DN1027_c0_g1:4261	si_s88	TRINITY_DN1027_c0_g1	4250	4270	4261	-34.80	-24.00	0.689655172413793	6	1-6,4270-4265;8-19,4263-4252	7-7,4264-4264[SIL];20-21,4251-4250[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	GUAGCGGAGAAGAAAAAGGGG&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999754717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1027_c0_g1_4261_TPlot.pdf
TRINITY_DN1027_c0_g1:4262	si_s87	TRINITY_DN1027_c0_g1	4251	4271	4262	-32.90	-24.50	0.74468085106383	6	1-7,4271-4265;9-20,4263-4252	8-8,4264-4264[SIL];21-21,4251-4251[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	UAGCGGAGAAGAAAAAGGGGG&UUCCUUUCUUCUUCUUCGCUU	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1027_c0_g1_4262_TPlot.pdf
TRINITY_DN1027_c0_g1:4264	si_s85	TRINITY_DN1027_c0_g1	4253	4273	4264	-33.80	-23.50	0.695266272189349	8.5	3-9,4271-4265;11-21,4263-4253	1-2,4273-4272[UP5];10-10,4264-4264[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GCGGAGAAGAAAAAGGGGGCU&CUUUCCUUUCUUCUUCUUCGC	4	0.999999997624242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1027_c0_g1_4264_TPlot.pdf
TRINITY_DN1027_c0_g1:8706	si_s307	TRINITY_DN1027_c0_g1	8694	8716	8706	-32.90	-22.70	0.689969604863222	8.5	3-9,8714-8708;10-14,8706-8702;15-20,8700-8695	1-2,8716-8715[UP5];x-x,8707-8707[BULt];x-x,8701-8701[BULt];21-21,8694-8694[UP3]	.((((((.(((((.(((((((..&..)))))))-)))))-)))))).	CGGAGGAGCAGGACUUUUCGCUU&UUGCGAAAA-UUCUG-UCCUUCU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN1027_c0_g1_8706_TPlot.pdf
TRINITY_DN1027_c0_g1:8839	si_a317	TRINITY_DN1027_c0_g1	8828	8848	8839	-24.30	-16.80	0.691358024691358	10	1-12,8848-8837	13-21,8836-8828[UP3]	.........((((((((((((&)))))))))))).........	AUGUCUAUGCAUGGAUGAAUC&GAUUUAUCCAUGAUUUUUUUA	3	0.999993094182893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1027_c0_g1_8839_TPlot.pdf
TRINITY_DN1027_c0_g1:9273	si_a717	TRINITY_DN1027_c0_g1	9261	9282	9273	-32.40	-21.20	0.654320987654321	16	8-15,9275-9268;16-21,9266-9261	1-7,9282-9276[UP5];x-x,9267-9267[BULt]	((((((.((((((((.......&.......))))))))-))))))	UGCCCGCAGUGAUGAGUCAGGU&AAAAUAAUCGUUACU-CGGGCA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN1027_c0_g1_9273_TPlot.pdf
TRINITY_DN10282_c3_g1:1340	si_a379	TRINITY_DN10282_c3_g1	1326	1349	1340	-23.90	-17.60	0.736401673640168	8.5	3-13,1347-1337;14-20,1333-1327	1-2,1349-1348[UP5];x-x,1336-1334[BULt];21-21,1326-1326[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	GUCUUAGUCCUUCGAGAUCAUUCC&AAAAUGAUUUCGA---AUUAAGAA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a379_TRINITY_DN10282_c3_g1_1340_TPlot.pdf
TRINITY_DN10285_c0_g1:357	si_a455	TRINITY_DN10285_c0_g1	345	366	357	-21.10	-13.80	0.654028436018957	6	1-8,366-359;11-13,356-354;14-21,352-345	9-10,358-357[SIL];x-x,353-353[BULt]	((((((((.(((..((((((((&))))))))..)))-))))))))	AUGUUAUGCUAUUUCAACAAUU&AAUUGUUGUUAUA-UAUAAUAU	3	0.99999999944762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN10285_c0_g1_357_TPlot.pdf
TRINITY_DN10285_c0_g1:498	si_a480	TRINITY_DN10285_c0_g1	487	507	498	-23.70	-16.50	0.69620253164557	6	1-4,507-504;6-21,502-487	5-5,503-503[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	AUAUAUUUUAUGUGACUGUAA&UUAUUGUUAUAUAGAAUAUGU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN10285_c0_g1_498_TPlot.pdf
TRINITY_DN10287_c0_g3:1448	si_s81	TRINITY_DN10287_c0_g3	1437	1458	1448	-28.90	-20.40	0.705882352941176	6	1-9,1458-1450;10-10,1448-1448;12-20,1446-1438	x-x,1449-1449[BULt];11-11,1447-1447[SIL];21-21,1437-1437[UP3]	.(((((((((.(.(((((((((&)))))))))-).))))))))).	UGGAGGAGAAUGUGAAAGAAAA&UUUUCUUUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10287_c0_g3_1448_TPlot.pdf
TRINITY_DN10287_c0_g3:1451	si_s79	TRINITY_DN10287_c0_g3	1439	1460	1451	-26.20	-18.00	0.687022900763359	7	3-11,1458-1450;12-12,1448-1448;14-21,1446-1439	1-2,1460-1459[UP5];x-x,1449-1449[BULt];13-13,1447-1447[SIL]	((((((((.(.(((((((((..&..)))))))))-).))))))))	GAGGAGAAUGUGAAAGAAAACG&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10287_c0_g3_1451_TPlot.pdf
TRINITY_DN10288_c0_g1:1288	si_s73	TRINITY_DN10288_c0_g1	1276	1300	1288	-24.00	-15.80	0.658333333333333	11.5	1-8,1300-1293;9-15,1289-1283;16-21,1281-1276	x-x,1292-1290[BULt];x-x,1282-1282[BULt]	((((((.(((((((...((((((((&))))))))---)))))))-))))))	GAAGGACAAGAAAGCGCAAGGUGGA&UCUAUUUU---UUUUCUU-UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10288_c0_g1_1288_TPlot.pdf
TRINITY_DN10288_c1_g2:620	si_a329	TRINITY_DN10288_c1_g2	606	629	620	-29.60	-20.80	0.702702702702703	7.5	1-11,629-619;12-14,617-615;15-21,612-606	x-x,618-618[BULt];x-x,614-613[BULt]	(((((((..(((.(((((((((((&)))))))))))-)))--)))))))	CGGGAUAGAAGGAAAUGAAAAGGU&AUUUUUUUAUU-CCU--UGUCCCG	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN10288_c1_g2_620_TPlot.pdf
TRINITY_DN10288_c1_g2:624	si_s72	TRINITY_DN10288_c1_g2	614	633	624	-24.10	-16.20	0.672199170124481	6	2-12,632-622;15-21,620-614	1-1,633-633[UP5];13-14,621-621[AILq]	(((((((.-(((((((((((.&.)))))))))))..)))))))	AAGGAAAU-GAAAAGGUAGAU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10288_c1_g2_624_TPlot.pdf
TRINITY_DN10290_c1_g1:78	si_s121	TRINITY_DN10290_c1_g1	67	87	78	-27.00	-18.10	0.67037037037037	4.5	1-14,87-74;17-17,71-71;19-21,69-67	15-16,73-72[SIL];18-18,70-70[SIL]	(((.(..((((((((((((((&))))))))))))))..).)))	GUUGAUGUCUUCUGUUUUUCU&AGAAAAAUAGAAGAGUUGAAU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN10290_c1_g1_78_TPlot.pdf
TRINITY_DN10291_c0_g2:121	si_a148	TRINITY_DN10291_c0_g2	111	130	121	-30.30	-22.70	0.749174917491749	4	1-13,130-118;16-19,116-113	14-15,117-117[AILq];20-21,112-111[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	UCGACCA-AAAACAACAACGA&UCGUUGUUGUUUUAAGGUCAA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN10291_c0_g2_121_TPlot.pdf
TRINITY_DN10291_c0_g2:123	si_a146	TRINITY_DN10291_c0_g2	113	132	123	-29.70	-22.30	0.750841750841751	5	3-15,130-118;18-21,116-113	1-2,132-131[UP5];16-17,117-117[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	GACCA-AAAACAACAACGAAU&AAUCGUUGUUGUUUUAAGGUC	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN10291_c0_g2_123_TPlot.pdf
TRINITY_DN10291_c0_g2:124	si_a145	TRINITY_DN10291_c0_g2	114	133	124	-28.10	-19.00	0.676156583629893	7	4-16,130-118;19-21,116-114	1-3,133-131[UP5];17-18,117-117[AILq]	(((.-(((((((((((((...&...)))))))))))))..)))	ACCA-AAAACAACAACGAAUU&UAAUCGUUGUUGUUUUAAGGU	0	0.158106854898723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN10291_c0_g2_124_TPlot.pdf
TRINITY_DN10291_c0_g2:126	si_a143	TRINITY_DN10291_c0_g2	115	136	126	-25.10	-18.40	0.733067729083665	6	1-6,136-131;7-18,129-118	x-x,130-130[BULt];19-21,117-115[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CCAAAAACAACAACGAAUUGAU&AUUAAU-CGUUGUUGUUUUAAG	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN10291_c0_g2_126_TPlot.pdf
TRINITY_DN10291_c0_g2:127	si_a142	TRINITY_DN10291_c0_g2	116	137	127	-23.50	-18.70	0.795744680851064	6	2-7,136-131;8-19,129-118	1-1,137-137[UP5];x-x,130-130[BULt];20-21,117-116[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	CAAAAACAACAACGAAUUGAUG&AAUUAAU-CGUUGUUGUUUUAA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN10291_c0_g2_127_TPlot.pdf
TRINITY_DN10291_c1_g1:773	si_a792	TRINITY_DN10291_c1_g1	762	782	773	-27.60	-18.50	0.670289855072464	7	2-9,781-774;11-19,772-764	1-1,782-782[UP5];10-10,773-773[SIL];20-21,763-762[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AAGAUUGGAAAUUAGAAAGGG&AUUUUUCUAUUUUCCAAUCCG	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN10291_c1_g1_773_TPlot.pdf
TRINITY_DN10291_c1_g1:775	si_a790	TRINITY_DN10291_c1_g1	764	784	775	-25.80	-18.50	0.717054263565891	9	4-11,781-774;13-21,772-764	1-3,784-782[UP5];12-12,773-773[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAUUGGAAAUUAGAAAGGGCC&CUAUUUUUCUAUUUUCCAAUC	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN10291_c1_g1_775_TPlot.pdf
TRINITY_DN10298_c0_g1:2382	si_a153	TRINITY_DN10298_c0_g1	2371	2391	2382	-28.70	-20.40	0.710801393728223	4	1-2,2391-2390;4-15,2388-2377;18-21,2374-2371	3-3,2389-2389[SIL];16-17,2376-2375[SIL]	((((..((((((((((((.((&)).))))))))))))..))))	AUAGCCUGACCUUAAAACUAC&GUUGUUUUAAGGUCAAUCUAU	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN10298_c0_g1_2382_TPlot.pdf
TRINITY_DN10298_c0_g1:2387	si_a148	TRINITY_DN10298_c0_g1	2376	2395	2387	-30.30	-20.40	0.673267326732673	5	1-2,2395-2394;4-7,2393-2390;9-20,2388-2377	3-3,x-x[BULq];8-8,2389-2389[SIL];21-21,2376-2376[UP3]	.((((((((((((.((((-((&)).)))).)))))))))))).	CUGACCUUAAAACUACAA-GA&UCGUUGUUGUUUUAAGGUCAA	4	0.999978654488071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN10298_c0_g1_2387_TPlot.pdf
TRINITY_DN10298_c0_g1:2388	si_a147	TRINITY_DN10298_c0_g1	2377	2396	2388	-30.40	-20.10	0.661184210526316	5	2-3,2395-2394;5-8,2393-2390;10-21,2388-2377	1-1,2396-2396[UP5];4-4,x-x[BULq];9-9,2389-2389[SIL]	((((((((((((.((((-((.&.)).)))).))))))))))))	UGACCUUAAAACUACAA-GAC&AUCGUUGUUGUUUUAAGGUCA	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN10298_c0_g1_2388_TPlot.pdf
TRINITY_DN10301_c0_g1:1507	si_a147	TRINITY_DN10301_c0_g1	1496	1516	1507	-30.40	-21.10	0.694078947368421	8	2-7,1515-1510;9-20,1508-1497	1-1,1516-1516[UP5];8-8,1509-1509[SIL];21-21,1496-1496[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	GGACCUUAAAACGUUGAUGAA&AUCGUUGUUGUUUUAAGGUCA	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN10301_c0_g1_1507_TPlot.pdf
TRINITY_DN10307_c0_g1:62	si_s71	TRINITY_DN10307_c0_g1	51	71	62	-25.70	-17.10	0.665369649805448	10	1-5,71-67;7-19,65-53	6-6,66-66[SIL];20-21,52-51[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UCGAAAGAAAAGAGGAGGGGG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10307_c0_g1_62_TPlot.pdf
TRINITY_DN10308_c0_g3:2381	si_s505	TRINITY_DN10308_c0_g3	2370	2391	2381	-24.70	-17.00	0.688259109311741	9	1-4,2391-2388;7-9,2385-2383;10-19,2381-2372	5-6,2387-2386[SIL];x-x,2382-2382[BULt];20-21,2371-2370[UP3]	..((((((((((.(((..((((&))))..)))-))))))))))..	GCGAAUAUAGAGUUUGGGUUGU&ACAAAACAA-UUCUAUAUUCUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN10308_c0_g3_2381_TPlot.pdf
TRINITY_DN1030_c0_g1:561	si_s357	TRINITY_DN1030_c0_g1	549	570	561	-28.70	-19.70	0.686411149825784	9.5	3-5,568-566;8-13,563-558;14-21,556-549	1-2,570-569[UP5];6-7,565-564[SIL];x-x,557-557[BULt]	((((((((.((((((..(((..&..)))..))))))-))))))))	AUCGGUUCUGGUCUAGCUCUGG&AAAGAAAUAGAUU-GAACCGAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN1030_c0_g1_561_TPlot.pdf
TRINITY_DN10310_c0_g1:233	si_a398	TRINITY_DN10310_c0_g1	222	242	233	-22.40	-14.80	0.660714285714286	8.5	2-8,241-235;11-20,232-223	1-1,242-242[UP5];9-10,234-233[SIL];21-21,222-222[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	AAAAUAAGGCAUAUCUAUGUG&AAUAUAGAAUUGUUUUGUUUA	4	0.999999999870653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN10310_c0_g1_233_TPlot.pdf
TRINITY_DN10310_c0_g1:537	si_s437	TRINITY_DN10310_c0_g1	526	546	537	-19.70	-13.50	0.685279187817259	7	2-8,545-539;10-19,537-528	1-1,546-546[UP5];9-9,538-538[SIL];20-21,527-526[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UCAUGUGUAGUAGGUAAUUAG&AUAAUUACAUAUUAUAUAUAA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN10310_c0_g1_537_TPlot.pdf
TRINITY_DN10310_c0_g1:538	si_s436	TRINITY_DN10310_c0_g1	527	547	538	-19.60	-13.50	0.688775510204082	7.5	3-9,545-539;11-20,537-528	1-2,547-546[UP5];10-10,538-538[SIL];21-21,527-527[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CAUGUGUAGUAGGUAAUUAGA&AAUAAUUACAUAUUAUAUAUA	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN10310_c0_g1_538_TPlot.pdf
TRINITY_DN10316_c0_g3:532	si_a785	TRINITY_DN10316_c0_g3	521	541	532	-25.90	-19.90	0.768339768339768	9	1-15,541-527	16-21,526-521[UP3]	......(((((((((((((((&)))))))))))))))......	AAAUGGAGAGAAGUAGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN10316_c0_g3_532_TPlot.pdf
TRINITY_DN10316_c0_g3:533	si_a784	TRINITY_DN10316_c0_g3	522	542	533	-24.70	-19.90	0.805668016194332	8.5	2-16,541-527	1-1,542-542[UP5];17-21,526-522[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUGGAGAGAAGUAGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10316_c0_g3_533_TPlot.pdf
TRINITY_DN10316_c0_g3:537	si_a780	TRINITY_DN10316_c0_g3	526	549	537	-27.30	-21.00	0.769230769230769	10	2-5,548-545;6-20,541-527	1-1,549-549[UP5];x-x,544-542[BULt];21-21,526-526[UP3]	.(((((((((((((((...((((.&.))))---))))))))))))))).	GAGAGAAGUAGAGGAGAUCUUGAG&UUCAA---CUCUUCUAUUUUUCUA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN10316_c0_g3_537_TPlot.pdf
TRINITY_DN10316_c0_g3:540	si_s79	TRINITY_DN10316_c0_g3	528	553	540	-26.20	-17.10	0.652671755725191	13	2-7,552-547;8-15,542-535;16-21,533-528	1-1,553-553[UP5];x-x,546-543[BULt];x-x,534-534[BULt]	((((((.((((((((....((((((.&.))))))----))))))))-))))))	GAGAAGUAGAGGAGAUCUUGAGAAAC&UUUUUUC----UUUCCUUU-CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10316_c0_g3_540_TPlot.pdf
TRINITY_DN10316_c0_g4:268	si_a784	TRINITY_DN10316_c0_g4	256	277	268	-24.70	-16.80	0.680161943319838	10	2-11,276-267;12-17,265-260	1-1,277-277[UP5];x-x,266-266[BULt];18-21,259-256[UP3]	....((((((.((((((((((.&.))))))))))-))))))....	AGUUUGGAGAUAGUAGAGGAGA&ACUCUUCUAUU-UUUCUAUUUU	2	0.999999987638954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10316_c0_g4_268_TPlot.pdf
TRINITY_DN10319_c0_g1:565	si_a406	TRINITY_DN10319_c0_g1	554	574	565	-19.80	-13.10	0.661616161616162	8	2-14,573-561	1-1,574-574[UP5];15-21,560-554[UP3]	.......(((((((((((((.&.))))))))))))).......	AUGUUUAAUAAACAAAACAAG&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN10319_c0_g1_565_TPlot.pdf
TRINITY_DN10319_c0_g1:577	si_a111	TRINITY_DN10319_c0_g1	566	586	577	-26.20	-17.70	0.675572519083969	7	3-10,584-577;12-20,575-567	1-2,586-585[UP5];11-11,576-576[SIL];21-21,566-566[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CAAAACAAGCAUGUAUUUUUU&AUAAAAUACGAGCUUGUUUUA	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN10319_c0_g1_577_TPlot.pdf
TRINITY_DN10325_c0_g1:2691	si_s495	TRINITY_DN10325_c0_g1	2681	2700	2691	-19.80	-13.30	0.671717171717172	4.5	1-12,2700-2689;16-21,2686-2681	13-15,2688-2687[AILq]	((((((..-((((((((((((&))))))))))))...))))))	GAUUGUAC-GUUUAUGUUUAA&UUAAAUAUAAACAAAACAAUU	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN10325_c0_g1_2691_TPlot.pdf
TRINITY_DN10325_c0_g1:2692	si_s494	TRINITY_DN10325_c0_g1	2682	2701	2692	-19.80	-13.10	0.661616161616162	4	1-13,2701-2689;17-21,2686-2682	14-16,2688-2687[AILq]	(((((..-(((((((((((((&)))))))))))))...)))))	AUUGUAC-GUUUAUGUUUAAA&UUUAAAUAUAAACAAAACAAU	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN10325_c0_g1_2692_TPlot.pdf
TRINITY_DN10325_c0_g1:3115	si_s599	TRINITY_DN10325_c0_g1	3104	3124	3115	-27.80	-18.90	0.679856115107914	8.5	2-16,3123-3109	1-1,3124-3124[UP5];17-21,3108-3104[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAUACAGGUUUGUUUGGAUUA&AAAUCCAAGCGAAUCUUUUUU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN10325_c0_g1_3115_TPlot.pdf
TRINITY_DN10325_c0_g1:3117	si_s597	TRINITY_DN10325_c0_g1	3106	3126	3117	-28.40	-18.90	0.665492957746479	10	4-18,3123-3109	1-3,3126-3124[UP5];19-21,3108-3106[UP3]	...(((((((((((((((...&...)))))))))))))))...	UACAGGUUUGUUUGGAUUAUA&AUAAAUCCAAGCGAAUCUUUU	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN10325_c0_g1_3117_TPlot.pdf
TRINITY_DN10328_c0_g1:201	si_s488	TRINITY_DN10328_c0_g1	189	210	201	-18.30	-12.30	0.672131147540984	6.5	1-12,210-199;15-20,195-190	13-14,198-196[AILt];21-21,189-189[UP3]	.((((((...((((((((((((&))))))))))))-..)))))).	AUGUUUAGUUUUUAAGUAAAUG&UAUUUAUUUAAA-UAUAAACAA	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN10328_c0_g1_201_TPlot.pdf
TRINITY_DN10329_c0_g1:50	si_s183	TRINITY_DN10329_c0_g1	39	59	50	-32.40	-22.30	0.688271604938272	10	2-12,58-48	1-1,59-59[UP5];13-21,47-39[UP3]	.........(((((((((((.&.))))))))))).........	ACCCCAACAGUUACUCGGGCG&UGCCCGAGUAACGAUUAUUUU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN10329_c0_g1_50_TPlot.pdf
TRINITY_DN10329_c0_g1:51	si_s182	TRINITY_DN10329_c0_g1	40	60	51	-32.60	-22.30	0.684049079754601	11	3-13,58-48	1-2,60-59[UP5];14-21,47-40[UP3]	........(((((((((((..&..)))))))))))........	CCCCAACAGUUACUCGGGCGC&AUGCCCGAGUAACGAUUAUUU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN10329_c0_g1_51_TPlot.pdf
TRINITY_DN1033_c0_g1:2987	si_s85	TRINITY_DN1033_c0_g1	2976	2996	2987	-33.80	-22.90	0.677514792899408	5.5	1-4,2996-2993;6-19,2991-2978	5-5,2992-2992[SIL];20-21,2977-2976[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAGGAGAAGGAGAAAGAAAAG&CUUUCCUUUCUUCUUCUUCGC	3	0.99999999999959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1033_c0_g1_2987_TPlot.pdf
TRINITY_DN1033_c0_g1:2989	si_s78	TRINITY_DN1033_c0_g1	2977	2998	2989	-26.20	-22.70	0.866412213740458	5	1-12,2998-2987;13-21,2985-2977	x-x,2986-2986[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	AGGAGAAGGAGAAAGAAAAGGA&UUUUUUUCUUUC-CUUUCUUCU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1033_c0_g1_2989_TPlot.pdf
TRINITY_DN1033_c0_g1:2993	si_s74	TRINITY_DN1033_c0_g1	2981	3002	2993	-25.00	-18.10	0.724	6.5	1-2,3002-3001;4-16,2999-2987;17-21,2985-2981	3-3,3000-3000[SIL];x-x,2986-2986[BULt]	(((((.(((((((((((((.((&)).)))))))))))))-)))))	GAAGGAGAAAGAAAAGGAGAAG&CUAUUUUUUUUCUUUC-CUUUC	3	0.999999999790959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1033_c0_g1_2993_TPlot.pdf
TRINITY_DN1033_c0_g1:2994	si_a786	TRINITY_DN1033_c0_g1	2984	3003	2994	-26.60	-18.60	0.699248120300752	4.5	1-6,3003-2998;8-14,2996-2990;16-21,2989-2984	7-7,2997-2997[SIL];15-15,x-x[BULq]	((((((-(((((((.((((((&)))))).))))))).))))))	GGAGAA-AGAAAAGGAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999861197202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1033_c0_g1_2994_TPlot.pdf
TRINITY_DN1033_c0_g1:2998	si_s69	TRINITY_DN1033_c0_g1	2987	3007	2998	-23.40	-18.00	0.769230769230769	8	3-7,3005-3001;9-21,2999-2987	1-2,3007-3006[UP5];8-8,3000-3000[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGAAAAGGAGAAGAAGCA&AACUUCUAUUUUUUUUCUUUC	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1033_c0_g1_2998_TPlot.pdf
TRINITY_DN10347_c0_g1:1213	si_s80	TRINITY_DN10347_c0_g1	1202	1222	1213	-28.20	-19.30	0.684397163120567	8	1-3,1222-1220;5-9,1218-1214;11-21,1212-1202	4-4,1219-1219[SIL];10-10,1213-1213[SIL]	(((((((((((.(((((.(((&))).))))).)))))))))))	GAAGAAGAAGGCGGAGAUAGA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10347_c0_g1_1213_TPlot.pdf
TRINITY_DN10347_c0_g1:1745	si_a406	TRINITY_DN10347_c0_g1	1734	1754	1745	-19.80	-13.10	0.661616161616162	6	3-16,1752-1739;19-21,1736-1734	1-2,1754-1753[UP5];17-18,1738-1737[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	UUUUUAUAUAAAUAAAACAUU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN10347_c0_g1_1745_TPlot.pdf
TRINITY_DN10347_c0_g2:423	si_a46	TRINITY_DN10347_c0_g2	410	433	423	-42.10	-30.00	0.712589073634204	5.5	1-5,433-429;6-15,427-418;16-17,415-414;19-21,412-410	x-x,428-428[BULt];x-x,417-416[BULt];18-18,413-413[SIL]	(((.((..((((((((((.(((((&)))))-))))))))))--)).)))	GAGGCGACGCUCCUAGACGCUACC&GGUAG-GUCUAGGAGU--CGACUC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN10347_c0_g2_423_TPlot.pdf
TRINITY_DN10351_c0_g1:632	si_s432	TRINITY_DN10351_c0_g1	619	642	632	-21.30	-13.90	0.652582159624413	4	1-7,642-636;8-16,634-626;17-21,623-619	x-x,635-635[BULt];x-x,625-624[BULt]	(((((..(((((((((.(((((((&)))))))-)))))))))--)))))	UAUAACUUAUGUAAUUGAUUGUUA&UAACAAU-AAUUACAUA--UUAUA	0	0.157685552878071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN10351_c0_g1_632_TPlot.pdf
TRINITY_DN10353_c1_g1:980	si_s773	TRINITY_DN10353_c1_g1	969	989	980	-23.10	-16.50	0.714285714285714	12.5	4-18,986-972	1-3,989-987[UP5];19-21,971-969[UP3]	...(((((((((((((((...&...)))))))))))))))...	GGCUGUGGUAGUAGUGGUGGC&UUAAUUACUAUUGCUAUAAAA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN10353_c1_g1_980_TPlot.pdf
TRINITY_DN10356_c1_g1:1265	si_s92	TRINITY_DN10356_c1_g1	1254	1274	1265	-34.90	-23.90	0.684813753581662	8	4-18,1271-1257;20-21,1255-1254	1-3,1274-1272[UP5];19-19,1256-1256[SIL]	((.(((((((((((((((...&...))))))))))))))).))	AUGCGAGGUGGAGAAGAAAGU&UUCUUCUUCUUCGCUUCGGAU	4	0.999999985978956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN10356_c1_g1_1265_TPlot.pdf
TRINITY_DN10356_c1_g1:1302	si_s416	TRINITY_DN10356_c1_g1	1291	1310	1302	-27.30	-17.90	0.655677655677656	6.5	1-4,1310-1307;6-18,1306-1294	5-5,x-x[BULq];19-21,1293-1291[UP3]	...(((((((((((((-((((&)))).)))))))))))))...	AUAUAUAUGGGAUAUG-CGUU&AACGACAUAUUCUAUAUAACA	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s416_TRINITY_DN10356_c1_g1_1302_TPlot.pdf
TRINITY_DN10358_c0_g1:833	si_s510	TRINITY_DN10358_c0_g1	822	842	833	-24.80	-16.80	0.67741935483871	9.5	2-15,841-828	1-1,842-842[UP5];16-21,827-822[UP3]	......((((((((((((((.&.))))))))))))))......	CUUCACAGGAUGUAGAGUUGG&ACAAUUCUAUAUUCUUAAUUC	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN10358_c0_g1_833_TPlot.pdf
TRINITY_DN10358_c0_g1:835	si_s508	TRINITY_DN10358_c0_g1	824	844	835	-22.80	-16.80	0.736842105263158	11.5	4-17,841-828	1-3,844-842[UP5];18-21,827-824[UP3]	....((((((((((((((...&...))))))))))))))....	UCACAGGAUGUAGAGUUGGGU&AAACAAUUCUAUAUUCUUAAU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN10358_c0_g1_835_TPlot.pdf
TRINITY_DN10358_c0_g1:839	si_s504	TRINITY_DN10358_c0_g1	828	848	839	-24.70	-16.80	0.680161943319838	15	8-21,841-828	1-7,848-842[UP5]	((((((((((((((.......&.......))))))))))))))	AGGAUGUAGAGUUGGGUCUUA&AACAAAACAAUUCUAUAUUCU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN10358_c0_g1_839_TPlot.pdf
TRINITY_DN1035_c0_g1:1744	si_a311	TRINITY_DN1035_c0_g1	1733	1754	1744	-32.70	-23.80	0.72782874617737	9.5	1-6,1754-1749;7-18,1747-1736	x-x,1748-1748[BULt];19-21,1735-1733[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CGCCAUGGGUAGGUCGCAGGUG&CGCUUG-GAUUUAUCCAUGAUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN1035_c0_g1_1744_TPlot.pdf
TRINITY_DN10365_c0_g1:332	si_s76	TRINITY_DN10365_c0_g1	319	341	332	-23.60	-16.80	0.711864406779661	10	4-11,338-331;12-21,328-319	1-3,341-339[UP5];x-x,330-329[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	AAGAAAGGAAGCAGGAAAAACUU&AUUUUUUUUCU--UUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10365_c0_g1_332_TPlot.pdf
TRINITY_DN10365_c0_g1:489	si_s898	TRINITY_DN10365_c0_g1	478	499	489	-30.70	-20.90	0.680781758957655	5.5	1-8,499-492;9-13,490-486;15-19,484-480	x-x,491-491[BULt];14-14,485-485[SIL];20-21,479-478[UP3]	..(((((.(((((.((((((((&))))))))-))))).)))))..	AAUGAAAAUGAAGAAGAAAGCU&GGCUUUCU-CUUCAAUUUCAAU	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN10365_c0_g1_489_TPlot.pdf
TRINITY_DN10365_c0_g1:490	si_s897	TRINITY_DN10365_c0_g1	479	500	490	-31.30	-21.10	0.674121405750799	6	2-9,499-492;10-14,490-486;16-20,484-480	1-1,500-500[UP5];x-x,491-491[BULt];15-15,485-485[SIL];21-21,479-479[UP3]	.(((((.(((((.((((((((.&.))))))))-))))).))))).	AUGAAAAUGAAGAAGAAAGCUA&AGGCUUUCU-CUUCAAUUUCAA	4	0.999967071746998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN10365_c0_g1_490_TPlot.pdf
TRINITY_DN10365_c0_g1:492	si_s896	TRINITY_DN10365_c0_g1	480	501	492	-31.60	-20.90	0.661392405063291	7	3-10,499-492;11-15,490-486;17-21,484-480	1-2,501-500[UP5];x-x,491-491[BULt];16-16,485-485[SIL]	(((((.(((((.((((((((..&..))))))))-))))).)))))	UGAAAAUGAAGAAGAAAGCUAU&UAGGCUUUCU-CUUCAAUUUCA	4	0.999995820903227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN10365_c0_g1_492_TPlot.pdf
TRINITY_DN10365_c0_g1:914	si_s1	TRINITY_DN10365_c0_g1	903	923	914	-18.70	-12.36	0.66096256684492	11.5	1-7,923-917;12-21,912-903	8-11,916-913[SIL]	((((((((((....(((((((&)))))))....))))))))))	UGAUGAUGAGGAUGAUGAAGA&UUUUUAUAUUACUUAUUAUUA	4	0.999999999987704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN10365_c0_g1_914_TPlot.pdf
TRINITY_DN1036_c0_g1:1145	si_s90	TRINITY_DN1036_c0_g1	1127	1154	1145	-35.30	-24.40	0.691218130311615	9	1-14,1154-1141;15-18,1133-1130;20-21,1128-1127	x-x,1140-1134[BULt];19-19,1129-1129[SIL]	((.((((.......((((((((((((((&))))))))))))))-------)))).))	CCCAAGCUAAGAAAGAAGAAGAAGAGAG&CUUUCUUCUUCUUC-------GCUUCGG	2	0.999976095820792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1036_c0_g1_1145_TPlot.pdf
TRINITY_DN1036_c0_g1:1149	si_s86	TRINITY_DN1036_c0_g1	1138	1158	1149	-32.90	-21.40	0.650455927051672	11	5-18,1154-1141	1-4,1158-1155[UP5];19-21,1140-1138[UP3]	...((((((((((((((....&....))))))))))))))...	AAAGAAGAAGAAGAGAGAAUU&UUUCCUUUCUUCUUCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1036_c0_g1_1149_TPlot.pdf
TRINITY_DN1036_c0_g1:1150	si_s81	TRINITY_DN1036_c0_g1	1140	1158	1150	-28.90	-19.00	0.657439446366782	8	3-9,1156-1150;12-21,1149-1140	1-2,1158-1157[UP5];10-11,x-x[BULq]	((((((((((--(((((((..&..)))))))..))))))))))	AGAAGAAGAA--GAGAGAAUU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1036_c0_g1_1150_TPlot.pdf
TRINITY_DN1036_c0_g1:1151	si_s84	TRINITY_DN1036_c0_g1	1140	1160	1151	-32.30	-21.40	0.662538699690402	13	7-20,1154-1141	1-6,1160-1155[UP5];21-21,1140-1140[UP3]	.((((((((((((((......&......)))))))))))))).	AGAAGAAGAAGAGAGAAUUCU&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1036_c0_g1_1151_TPlot.pdf
TRINITY_DN1036_c0_g1:1152	si_s83	TRINITY_DN1036_c0_g1	1141	1161	1152	-30.90	-21.00	0.679611650485437	14	8-21,1154-1141	1-7,1161-1155[UP5]	((((((((((((((.......&.......))))))))))))))	GAAGAAGAAGAGAGAAUUCUU&UUCUUUCCUUUCUUCUUCUUC	2	0.999999999999764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1036_c0_g1_1152_TPlot.pdf
TRINITY_DN1036_c0_g1:1230	si_s88	TRINITY_DN1036_c0_g1	1216	1240	1230	-34.80	-23.00	0.660919540229885	8	1-2,1240-1239;3-11,1237-1229;12-13,1227-1226;14-21,1223-1216	x-x,1238-1238[BULt];x-x,1228-1228[BULt];x-x,1225-1224[BULt]	((((((((..((.(((((((((.((&))-)))))))))-))--))))))))	GAAGCGAAACGACAGGAGAGAGAGA&UC-CUUUCUUCU-UC--UUCGCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1036_c0_g1_1230_TPlot.pdf
TRINITY_DN1036_c0_g1:1235	si_s76	TRINITY_DN1036_c0_g1	1224	1244	1235	-23.60	-16.10	0.682203389830509	13	5-16,1240-1229;18-19,1227-1226	1-4,1244-1241[UP5];17-17,1228-1228[SIL];20-21,1225-1224[UP3]	..((.((((((((((((....&....)))))))))))).))..	ACGACAGGAGAGAGAGAUCCA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1036_c0_g1_1235_TPlot.pdf
TRINITY_DN1036_c0_g1:1240	si_s71	TRINITY_DN1036_c0_g1	1229	1251	1240	-25.70	-18.54	0.721400778210117	14	1-5,1251-1247;10-21,1240-1229	6-9,1246-1241[AILt]	((((((((((((......(((((&)))))--....))))))))))))	AGGAGAGAGAGAUCCAAAAGAAG&CUUCU--AUUUUUUUUCUUUCCU	3	0.999999999971826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1036_c0_g1_1240_TPlot.pdf
TRINITY_DN1036_c0_g1:1241	si_s70	TRINITY_DN1036_c0_g1	1230	1252	1241	-25.80	-17.54	0.67984496124031	15	2-6,1251-1247;11-21,1240-1230	1-1,1252-1252[UP5];7-10,1246-1241[AILt]	(((((((((((......(((((.&.)))))--....)))))))))))	GGAGAGAGAGAUCCAAAAGAAGG&ACUUCU--AUUUUUUUUCUUUCC	2	0.999999999985999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1036_c0_g1_1241_TPlot.pdf
TRINITY_DN1036_c0_g1:1264	si_s76	TRINITY_DN1036_c0_g1	1246	1273	1264	-23.60	-15.40	0.652542372881356	11.5	2-14,1272-1260;15-21,1252-1246	1-1,1273-1273[UP5];x-x,1259-1253[BULt]	(((((((.......(((((((((((((.&.)))))))))))))-------)))))))	AAGAAGGCUUUAAAGAAAGAGAGGAAAA&AUUUUUUUUCUUUC-------CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1036_c0_g1_1264_TPlot.pdf
TRINITY_DN1036_c0_g1:1364	si_a452	TRINITY_DN1036_c0_g1	1353	1373	1364	-23.00	-15.70	0.682608695652174	8.5	1-10,1373-1364;13-19,1361-1355	11-12,1363-1362[SIL];20-21,1354-1353[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	AAGUAUGUGCGAACGAUUAUC&GAUAAUUGUUGUUAUAUAUAA	4	0.999175696282049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN1036_c0_g1_1364_TPlot.pdf
TRINITY_DN1036_c0_g1:1365	si_a451	TRINITY_DN1036_c0_g1	1354	1374	1365	-23.60	-16.80	0.711864406779661	6.5	1-11,1374-1364;14-20,1361-1355	12-13,1363-1362[SIL];21-21,1354-1354[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AGUAUGUGCGAACGAUUAUCU&AGAUAAUUGUUGUUAUAUAUA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN1036_c0_g1_1365_TPlot.pdf
TRINITY_DN1036_c0_g1:1366	si_a450	TRINITY_DN1036_c0_g1	1355	1375	1366	-25.20	-19.70	0.781746031746032	4.5	1-12,1375-1364;15-21,1361-1355	13-14,1363-1362[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GUAUGUGCGAACGAUUAUCUC&GAGAUAAUUGUUGUUAUAUAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN1036_c0_g1_1366_TPlot.pdf
TRINITY_DN1036_c0_g1:1367	si_a449	TRINITY_DN1036_c0_g1	1356	1376	1367	-25.70	-18.60	0.723735408560311	5	2-13,1375-1364;16-21,1361-1356	1-1,1376-1376[UP5];14-15,1363-1362[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UAUGUGCGAACGAUUAUCUCU&UGAGAUAAUUGUUGUUAUAUA	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN1036_c0_g1_1367_TPlot.pdf
TRINITY_DN1036_c0_g1:1368	si_a448	TRINITY_DN1036_c0_g1	1357	1377	1368	-25.50	-17.20	0.674509803921569	7	3-14,1375-1364;17-21,1361-1357	1-2,1377-1376[UP5];15-16,1363-1362[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	AUGUGCGAACGAUUAUCUCUA&AUGAGAUAAUUGUUGUUAUAU	2	0.988813635845706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN1036_c0_g1_1368_TPlot.pdf
TRINITY_DN1036_c0_g1:615	si_a326	TRINITY_DN1036_c0_g1	604	623	615	-26.20	-17.30	0.66030534351145	10	3-9,621-615;13-21,612-604	1-2,623-622[UP5];10-12,614-613[AILq]	(((((((((..-(((((((..&..)))))))...)))))))))	GGCGAGGAAAU-AAAAAUCGA&AUGAUUUUUUUAUUCCUUGUC	3	0.99999999990314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1036_c0_g1_615_TPlot.pdf
TRINITY_DN1036_c0_g1:802	si_a363	TRINITY_DN1036_c0_g1	791	811	802	-26.40	-17.70	0.670454545454545	10	1-7,811-805;9-17,803-795	8-8,804-804[SIL];18-21,794-791[UP3]	....(((((((((.(((((((&))))))).)))))))))....	CUCGUUGGUCCGAACGAGGUG&UAUUUUGAUCGGAUCAAAAAU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN1036_c0_g1_802_TPlot.pdf
TRINITY_DN1036_c0_g1:996	si_s76	TRINITY_DN1036_c0_g1	980	1005	996	-23.60	-15.40	0.652542372881356	9	2-13,1004-993;14-19,987-982	1-1,1005-1005[UP5];x-x,992-988[BULt];20-21,981-980[UP3]	..((((((.....((((((((((((.&.))))))))))))-----))))))..	CCGAAAGGCUUAGAAAGAAAAAAGAA&AUUUUUUUUCUUU-----CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1036_c0_g1_996_TPlot.pdf
TRINITY_DN10370_c0_g1:135	si_s87	TRINITY_DN10370_c0_g1	123	146	135	-32.90	-22.80	0.693009118541034	11	1-9,146-138;10-15,135-130;16-20,128-124	x-x,137-136[BULt];x-x,129-129[BULt];21-21,123-123[UP3]	.(((((.((((((..(((((((((&)))))))))--))))))-))))).	UAGCGACAGAGGAGCGGGGAGGGA&UUCCUUUCU--UCUUCU-UCGCUU	4	0.999999999999654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10370_c0_g1_135_TPlot.pdf
TRINITY_DN10372_c0_g1:3086	si_a779	TRINITY_DN10372_c0_g1	3076	3095	3086	-27.00	-17.80	0.659259259259259	4	2-12,3094-3084;14-19,3083-3078	1-1,3095-3095[UP5];13-13,x-x[BULq];20-21,3077-3076[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	AAAAAAAU-GAAGAGUUGAAA&AUUCAACUCUUCUAUUUUUCU	4	0.999999866969761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN10372_c0_g1_3086_TPlot.pdf
TRINITY_DN10372_c0_g1:4262	si_s98	TRINITY_DN10372_c0_g1	4250	4271	4262	-34.70	-23.20	0.668587896253602	7.5	2-16,4270-4256;18-20,4253-4251	1-1,4271-4271[UP5];17-17,4255-4254[AILt];21-21,4250-4250[UP3]	.(((..(((((((((((((((.&.)))))))))))))))-.))).	AUUCGGGGUUCGAGGCGGAGAU&UUCUUCGCUUCGGAUU-GGAAA	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN10372_c0_g1_4262_TPlot.pdf
TRINITY_DN10372_c0_g1:4265	si_s95	TRINITY_DN10372_c0_g1	4254	4275	4265	-36.30	-24.00	0.661157024793388	8.5	1-4,4275-4272;5-19,4270-4256	x-x,4271-4271[BULt];20-21,4255-4254[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	GGGGUUCGAGGCGGAGAUGGAA&UUCU-UCUUCGCUUCGGAUUGG	3	0.999992202311982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN10372_c0_g1_4265_TPlot.pdf
TRINITY_DN10376_c0_g1:3148	si_s769	TRINITY_DN10376_c0_g1	3137	3162	3148	-27.00	-17.70	0.655555555555556	18	2-7,3161-3156;10-21,3148-3137	1-1,3162-3162[UP5];8-9,3155-3149[AILt]	((((((((((((.......((((((.&.))))))-----..))))))))))))	AUAGCAGUGGUGCCAGAGCUAGUCGG&ACGAUUA-----AUUACUAUUGCUAU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN10376_c0_g1_3148_TPlot.pdf
TRINITY_DN1037_c0_g1:50	si_a74	TRINITY_DN1037_c0_g1	39	59	50	-22.20	-17.00	0.765765765765766	6.5	2-11,58-49;13-20,47-40	1-1,59-59[UP5];12-12,48-48[SIL];21-21,39-39[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	GAAUGAUGACGGACAAUUUGC&UCAAAUUGUUUUUCAUUAUUA	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1037_c0_g1_50_TPlot.pdf
TRINITY_DN1037_c0_g1:51	si_a73	TRINITY_DN1037_c0_g1	40	60	51	-21.90	-16.60	0.757990867579909	6.5	3-12,58-49;14-21,47-40	1-2,60-59[UP5];13-13,48-48[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AAUGAUGACGGACAAUUUGCG&UUCAAAUUGUUUUUCAUUAUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1037_c0_g1_51_TPlot.pdf
TRINITY_DN10383_c0_g1:1994	si_a326	TRINITY_DN10383_c0_g1	1983	2003	1994	-26.20	-19.90	0.759541984732824	7.5	3-19,2001-1985	1-2,2003-2002[UP5];20-21,1984-1983[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUCGAGGGGUAAAAAGAUCGA&AUGAUUUUUUUAUUCCUUGUC	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN10383_c0_g1_1994_TPlot.pdf
TRINITY_DN10383_c0_g1:1995	si_a325	TRINITY_DN10383_c0_g1	1984	2004	1995	-25.90	-19.90	0.768339768339768	8.5	4-20,2001-1985	1-3,2004-2002[UP5];21-21,1984-1984[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UCGAGGGGUAAAAAGAUCGAU&CAUGAUUUUUUUAUUCCUUGU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN10383_c0_g1_1995_TPlot.pdf
TRINITY_DN10383_c0_g1:1996	si_a324	TRINITY_DN10383_c0_g1	1985	2005	1996	-27.50	-19.70	0.716363636363636	9.5	5-21,2001-1985	1-4,2005-2002[UP5]	(((((((((((((((((....&....)))))))))))))))))	CGAGGGGUAAAAAGAUCGAUU&CCAUGAUUUUUUUAUUCCUUG	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN10383_c0_g1_1996_TPlot.pdf
TRINITY_DN10387_c0_g3:173	si_a409	TRINITY_DN10387_c0_g3	162	182	173	-19.50	-12.80	0.656410256410256	9.5	1-12,182-171;14-16,169-167	13-13,170-170[SIL];17-21,166-162[UP3]	.....(((.((((((((((((&)))))))))))).))).....	CCAGAUGACUGUGAACAAAGC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999999661214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10387_c0_g3_173_TPlot.pdf
TRINITY_DN1038_c0_g1:444	si_a34	TRINITY_DN1038_c0_g1	433	453	444	-38.10	-24.90	0.653543307086614	8	2-18,452-436	1-1,453-453[UP5];19-21,435-433[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CUCCUUGCCGGUUUUGGAAUG&AGUUCUAAGACCGGUAGGUCU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a34_TRINITY_DN1038_c0_g1_444_TPlot.pdf
TRINITY_DN1038_c0_g1:450	si_a28	TRINITY_DN1038_c0_g1	439	459	450	-30.70	-20.20	0.657980456026059	16	8-21,452-439	1-7,459-453[UP5]	((((((((((((((.......&.......))))))))))))))	GCCGGUUUUGGAAUGGUAGCA&AUUUUUAGUUCUAAGACCGGU	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN1038_c0_g1_450_TPlot.pdf
TRINITY_DN10392_c1_g3:27	si_s375	TRINITY_DN10392_c1_g3	16	40	27	-44.10	-30.00	0.680272108843537	13.5	1-6,40-35;7-18,30-19	x-x,34-31[BULt];19-21,18-16[UP3]	...((((((((((((....((((((&))))))----))))))))))))...	ACCGCGGAUAUGCGGAACUGCGAUC&GAUCGC----UCGCGUGUCCGCCUU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN10392_c1_g3_27_TPlot.pdf
TRINITY_DN10392_c1_g3:28	si_s374	TRINITY_DN10392_c1_g3	17	41	28	-45.60	-31.50	0.690789473684211	12.5	1-7,41-35;8-19,30-19	x-x,34-31[BULt];20-21,18-17[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	CCGCGGAUAUGCGGAACUGCGAUCG&CGAUCGC----UCGCGUGUCCGCCU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN10392_c1_g3_28_TPlot.pdf
TRINITY_DN10393_c0_g1:2436	si_a320	TRINITY_DN10393_c0_g1	2425	2445	2436	-24.40	-16.20	0.663934426229508	7.5	1-10,2445-2436;13-20,2433-2426	11-12,2435-2434[SIL];21-21,2425-2425[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	UAAUAAAGGUUUCAUGGAUGG&UUAUCCAUGAUUUUUUUAUUC	4	0.9999999783707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN10393_c0_g1_2436_TPlot.pdf
TRINITY_DN10393_c0_g1:2438	si_a318	TRINITY_DN10393_c0_g1	2427	2447	2438	-22.50	-15.60	0.693333333333333	8	3-12,2445-2436;15-21,2433-2427	1-2,2447-2446[UP5];13-14,2435-2434[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AUAAAGGUUUCAUGGAUGGCA&AUUUAUCCAUGAUUUUUUUAU	3	0.999999967686141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN10393_c0_g1_2438_TPlot.pdf
TRINITY_DN10393_c0_g1:2676	si_a639	TRINITY_DN10393_c0_g1	2665	2685	2676	-23.60	-16.20	0.686440677966102	6.5	1-17,2685-2669	18-21,2668-2665[UP3]	....(((((((((((((((((&)))))))))))))))))....	CCGAAUUAUUCAAAGAAAUUG&CGAUUUUUUUGAGUAAUAUAU	4	0.999953229570889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN10393_c0_g1_2676_TPlot.pdf
TRINITY_DN10393_c0_g1:2677	si_a638	TRINITY_DN10393_c0_g1	2666	2686	2677	-24.40	-16.20	0.663934426229508	6.5	2-18,2685-2669	1-1,2686-2686[UP5];19-21,2668-2666[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CGAAUUAUUCAAAGAAAUUGU&UCGAUUUUUUUGAGUAAUAUA	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN10393_c0_g1_2677_TPlot.pdf
TRINITY_DN10393_c0_g1:2921	si_a350	TRINITY_DN10393_c0_g1	2910	2930	2921	-20.30	-13.30	0.655172413793103	15	8-20,2923-2911	1-7,2930-2924[UP5];21-21,2910-2910[UP3]	.(((((((((((((.......&.......))))))))))))).	CCGAAGUAGAAUUAUGUGCUG&AAAAUAUUAAUUCUAUUUUGA	3	0.999997731878951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN10393_c0_g1_2921_TPlot.pdf
TRINITY_DN10393_c0_g1:2946	si_s791	TRINITY_DN10393_c0_g1	2935	2956	2946	-28.50	-19.40	0.680701754385965	8.5	2-4,2955-2953;6-17,2950-2939;19-20,2937-2936	1-1,2956-2956[UP5];5-5,2952-2951[AILt];18-18,2938-2938[SIL];21-21,2935-2935[UP3]	.((.((((((((((((..(((.&.)))-.)))))))))))).)).	UGAAGAAAUGCGAGCUAGGUUA&AAAC-AAGCUCGUAUUUUAUCU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN10393_c0_g1_2946_TPlot.pdf
TRINITY_DN10393_c0_g1:2950	si_s787	TRINITY_DN10393_c0_g1	2939	2960	2950	-26.20	-17.70	0.675572519083969	14	6-8,2955-2953;10-21,2950-2939	1-5,2960-2956[UP5];9-9,2952-2951[AILt]	((((((((((((..(((.....&.....)))-.))))))))))))	GAAAUGCGAGCUAGGUUAACUG&UAUAAAAC-AAGCUCGUAUUUU	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN10393_c0_g1_2950_TPlot.pdf
TRINITY_DN10393_c0_g1:3018	si_s90	TRINITY_DN10393_c0_g1	2997	3027	3018	-35.30	-24.00	0.679886685552408	14	1-14,3027-3014;15-19,3003-2999	x-x,3013-3004[BULt];20-21,2998-2997[UP3]	..(((((..........((((((((((((((&))))))))))))))----------)))))..	UGGAAGCUAGAAUCGAAGAGGAAGAAGAGAG&CUUUCUUCUUCUUC----------GCUUCGG	3	0.999999999908848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN10393_c0_g1_3018_TPlot.pdf
TRINITY_DN10393_c0_g1:3020	si_s88	TRINITY_DN10393_c0_g1	2999	3029	3020	-34.80	-27.80	0.798850574712644	11.5	1-16,3029-3014;17-21,3003-2999	x-x,3013-3004[BULt]	(((((..........((((((((((((((((&))))))))))))))))----------)))))	GAAGCUAGAAUCGAAGAGGAAGAAGAGAGGA&UCCUUUCUUCUUCUUC----------GCUUC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN10393_c0_g1_3020_TPlot.pdf
TRINITY_DN10393_c0_g1:3021	si_s87	TRINITY_DN10393_c0_g1	3010	3030	3021	-32.90	-25.50	0.775075987841945	6.5	2-17,3029-3014	1-1,3030-3030[UP5];18-21,3013-3010[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGAAGAGGAAGAAGAGAGGAC&UUCCUUUCUUCUUCUUCGCUU	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10393_c0_g1_3021_TPlot.pdf
TRINITY_DN10393_c0_g1:3022	si_s86	TRINITY_DN10393_c0_g1	3011	3031	3022	-32.90	-25.50	0.775075987841945	7.5	3-18,3029-3014	1-2,3031-3030[UP5];19-21,3013-3011[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAAGAGGAAGAAGAGAGGACC&UUUCCUUUCUUCUUCUUCGCU	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10393_c0_g1_3022_TPlot.pdf
TRINITY_DN10393_c0_g1:3023	si_s85	TRINITY_DN10393_c0_g1	3012	3032	3023	-33.80	-25.50	0.754437869822485	8.5	4-19,3029-3014	1-3,3032-3030[UP5];20-21,3013-3012[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAGGAAGAAGAGAGGACCA&CUUUCCUUUCUUCUUCUUCGC	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN10393_c0_g1_3023_TPlot.pdf
TRINITY_DN10393_c0_g1:3024	si_s84	TRINITY_DN10393_c0_g1	3013	3033	3024	-32.30	-25.50	0.789473684210526	9.5	5-20,3029-3014	1-4,3033-3030[UP5];21-21,3013-3013[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAGGAAGAAGAGAGGACCAC&UCUUUCCUUUCUUCUUCUUCG	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10393_c0_g1_3024_TPlot.pdf
TRINITY_DN10393_c0_g1:3025	si_s83	TRINITY_DN10393_c0_g1	3014	3034	3025	-30.90	-25.10	0.812297734627832	10.5	6-21,3029-3014	1-5,3034-3030[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGGAAGAAGAGAGGACCACA&UUCUUUCCUUUCUUCUUCUUC	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10393_c0_g1_3025_TPlot.pdf
TRINITY_DN10393_c0_g1:3026	si_s82	TRINITY_DN10393_c0_g1	3015	3035	3026	-28.90	-21.90	0.757785467128028	12.5	7-21,3029-3015	1-6,3035-3030[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAAGAAGAGAGGACCACAA&UUUCUUUCCUUUCUUCUUCUU	3	0.999999967025317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10393_c0_g1_3026_TPlot.pdf
TRINITY_DN10393_c0_g1:3027	si_s81	TRINITY_DN10393_c0_g1	3016	3036	3027	-28.90	-21.10	0.730103806228374	14.5	8-21,3029-3016	1-7,3036-3030[UP5]	((((((((((((((.......&.......))))))))))))))	GGAAGAAGAGAGGACCACAAC&UUUUCUUUCCUUUCUUCUUCU	4	0.999999999998924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10393_c0_g1_3027_TPlot.pdf
TRINITY_DN10393_c0_g1:3093	si_a68	TRINITY_DN10393_c0_g1	3082	3104	3093	-25.40	-18.70	0.736220472440945	10.5	1-8,3104-3097;10-20,3093-3083	9-9,3096-3094[AILt];21-21,3082-3082[UP3]	.(((((((((((...((((((((&))))))))--.))))))))))).	GGAAGAACAGUUAGAGGAAGAGG&CUUCUUUC--AAAUUGUUUUUCA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN10393_c0_g1_3093_TPlot.pdf
TRINITY_DN10393_c0_g1:3097	si_a787	TRINITY_DN10393_c0_g1	3081	3107	3097	-26.30	-17.10	0.650190114068441	12.5	1-5,3107-3103;7-14,3100-3093;15-21,3087-3081	6-6,3102-3101[AILt];x-x,3092-3088[BULt]	(((((((.....((((((((..(((((&)))))-.))))))))-----)))))))	UGGAAGAACAGUUAGAGGAAGAGGAAG&CUUCU-AUUUUUCUA-----UUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN10393_c0_g1_3097_TPlot.pdf
TRINITY_DN10393_c0_g1:3105	si_s84	TRINITY_DN10393_c0_g1	3094	3115	3105	-32.30	-21.90	0.678018575851393	9.5	1-3,3115-3113;6-6,3110-3110;7-20,3108-3095	4-5,3112-3111[SIL];x-x,3109-3109[BULt];21-21,3094-3094[UP3]	.((((((((((((((.(..(((&)))..)-)))))))))))))).	AGAGGAAGAGGAAGGUGCUAGA&UCUUUC-CUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10393_c0_g1_3105_TPlot.pdf
TRINITY_DN10393_c0_g1:3106	si_s83	TRINITY_DN10393_c0_g1	3095	3116	3106	-30.90	-21.60	0.699029126213592	9	2-4,3115-3113;7-7,3110-3110;8-21,3108-3095	1-1,3116-3116[UP5];5-6,3112-3111[SIL];x-x,3109-3109[BULt]	((((((((((((((.(..(((.&.)))..)-))))))))))))))	GAGGAAGAGGAAGGUGCUAGAC&UUCUUUC-CUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10393_c0_g1_3106_TPlot.pdf
TRINITY_DN10393_c0_g1:3268	si_s92	TRINITY_DN10393_c0_g1	3256	3277	3268	-34.90	-22.90	0.656160458452722	7	1-12,3277-3266;13-15,3264-3262;18-19,3259-3258	x-x,3265-3265[BULt];16-17,3261-3260[SIL];20-21,3257-3256[UP3]	..((..(((.((((((((((((&))))))))))))-)))..))..	AGCCUUAGCUGAAGAAGAGGAA&UUCUUCUUCUUC-GCUUCGGAU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN10393_c0_g1_3268_TPlot.pdf
TRINITY_DN10393_c0_g1:3269	si_s91	TRINITY_DN10393_c0_g1	3257	3278	3269	-34.70	-23.80	0.685878962536023	5	1-13,3278-3266;14-16,3264-3262;19-20,3259-3258	x-x,3265-3265[BULt];17-18,3261-3260[SIL];21-21,3257-3257[UP3]	.((..(((.(((((((((((((&)))))))))))))-)))..)).	GCCUUAGCUGAAGAAGAGGAAA&UUUCUUCUUCUUC-GCUUCGGA	3	0.999999993471148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN10393_c0_g1_3269_TPlot.pdf
TRINITY_DN10393_c0_g1:3273	si_s87	TRINITY_DN10393_c0_g1	3261	3283	3273	-32.90	-22.20	0.674772036474164	8	3-7,3281-3277;8-17,3275-3266;18-20,3264-3262	1-2,3283-3282[UP5];x-x,3276-3276[BULt];x-x,3265-3265[BULt];21-21,3261-3261[UP3]	.(((.((((((((((.(((((..&..)))))-))))))))))-))).	UAGCUGAAGAAGAGGAAAAGGCC&UUCCUUU-CUUCUUCUUC-GCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10393_c0_g1_3273_TPlot.pdf
TRINITY_DN10393_c0_g1:3274	si_s86	TRINITY_DN10393_c0_g1	3262	3284	3274	-32.90	-22.20	0.674772036474164	9	4-8,3281-3277;9-18,3275-3266;19-21,3264-3262	1-3,3284-3282[UP5];x-x,3276-3276[BULt];x-x,3265-3265[BULt]	(((.((((((((((.(((((...&...)))))-))))))))))-)))	AGCUGAAGAAGAGGAAAAGGCCA&UUUCCUUU-CUUCUUCUUC-GCU	2	0.999999999983125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10393_c0_g1_3274_TPlot.pdf
TRINITY_DN10393_c0_g1:3970	si_a497	TRINITY_DN10393_c0_g1	3959	3979	3970	-32.00	-21.70	0.678125	7	1-18,3979-3962	19-21,3961-3959[UP3]	...((((((((((((((((((&))))))))))))))))))...	CAAGAAGGUGAAAGACGGCGU&AUGUCGUUUUUCGUCUUCCUU	4	0.999999999998946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN10393_c0_g1_3970_TPlot.pdf
TRINITY_DN10393_c0_g1:3972	si_a495	TRINITY_DN10393_c0_g1	3961	3981	3972	-31.90	-23.00	0.721003134796238	6	2-20,3980-3962	1-1,3981-3981[UP5];21-21,3961-3961[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGAAGGUGAAAGACGGCGUAA&AUAUGUCGUUUUUCGUCUUCC	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN10393_c0_g1_3972_TPlot.pdf
TRINITY_DN10393_c0_g1:3973	si_a494	TRINITY_DN10393_c0_g1	3962	3982	3973	-29.50	-23.00	0.779661016949153	7	3-21,3980-3962	1-2,3982-3981[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAAGGUGAAAGACGGCGUAAA&AAUAUGUCGUUUUUCGUCUUC	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN10393_c0_g1_3973_TPlot.pdf
TRINITY_DN10393_c0_g1:3974	si_a493	TRINITY_DN10393_c0_g1	3963	3983	3974	-29.50	-19.80	0.671186440677966	9	4-21,3980-3963	1-3,3983-3981[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAGGUGAAAGACGGCGUAAAC&GAAUAUGUCGUUUUUCGUCUU	2	0.998974649019026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN10393_c0_g1_3974_TPlot.pdf
TRINITY_DN10393_c0_g1:4030	si_a316	TRINITY_DN10393_c0_g1	4019	4039	4030	-26.30	-17.40	0.661596958174905	12	1-12,4039-4028	13-21,4027-4019[UP3]	.........((((((((((((&)))))))))))).........	UUGUCGGAGGUGGAUAGGUCC&GGAUUUAUCCAUGAUUUUUUU	4	0.99999997551886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN10393_c0_g1_4030_TPlot.pdf
TRINITY_DN10393_c0_g1:4031	si_a315	TRINITY_DN10393_c0_g1	4020	4040	4031	-27.00	-18.40	0.681481481481481	10.5	1-13,4040-4028	14-21,4027-4020[UP3]	........(((((((((((((&)))))))))))))........	UGUCGGAGGUGGAUAGGUCCA&UGGAUUUAUCCAUGAUUUUUU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN10393_c0_g1_4031_TPlot.pdf
TRINITY_DN10393_c0_g1:4032	si_a314	TRINITY_DN10393_c0_g1	4021	4041	4032	-27.10	-19.30	0.712177121771218	9.5	1-14,4041-4028	15-21,4027-4021[UP3]	.......((((((((((((((&)))))))))))))).......	GUCGGAGGUGGAUAGGUCCAA&UUGGAUUUAUCCAUGAUUUUU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN10393_c0_g1_4032_TPlot.pdf
TRINITY_DN10393_c0_g1:4033	si_a313	TRINITY_DN10393_c0_g1	4022	4042	4033	-28.70	-19.50	0.679442508710801	9.5	2-15,4041-4028	1-1,4042-4042[UP5];16-21,4027-4022[UP3]	......((((((((((((((.&.))))))))))))))......	UCGGAGGUGGAUAGGUCCAAA&CUUGGAUUUAUCCAUGAUUUU	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN10393_c0_g1_4033_TPlot.pdf
TRINITY_DN10393_c0_g1:4284	si_s896	TRINITY_DN10393_c0_g1	4272	4293	4284	-31.60	-23.50	0.743670886075949	7.5	3-14,4291-4280;17-21,4276-4272	1-2,4293-4292[UP5];15-16,4279-4277[AILt]	(((((...((((((((((((..&..))))))))))))-..)))))	UGGAAGAAGAAGAGGAAGCCAA&UAGGCUUUCUCUUC-AAUUUCA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN10393_c0_g1_4284_TPlot.pdf
TRINITY_DN10393_c0_g1:4285	si_s895	TRINITY_DN10393_c0_g1	4273	4294	4285	-31.10	-22.10	0.710610932475884	9.5	4-15,4291-4280;18-21,4276-4273	1-3,4294-4292[UP5];16-17,4279-4277[AILt]	((((...((((((((((((...&...))))))))))))-..))))	GGAAGAAGAAGAGGAAGCCAAA&AUAGGCUUUCUCUUC-AAUUUC	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN10393_c0_g1_4285_TPlot.pdf
TRINITY_DN10393_c0_g1:4289	si_s891	TRINITY_DN10393_c0_g1	4278	4298	4289	-29.60	-21.30	0.719594594594595	15.5	8-19,4291-4280	1-7,4298-4292[UP5];20-21,4279-4278[UP3]	..((((((((((((.......&.......))))))))))))..	AAGAAGAGGAAGCCAAAAAGA&AUAAAUAGGCUUUCUCUUCAA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN10393_c0_g1_4289_TPlot.pdf
TRINITY_DN10393_c0_g1:5885	si_s94	TRINITY_DN10393_c0_g1	5870	5894	5885	-35.50	-25.40	0.715492957746479	6	1-11,5894-5884;12-16,5882-5878;17-21,5874-5870	x-x,5883-5883[BULt];x-x,5877-5875[BULt]	(((((...(((((.(((((((((((&)))))))))))-)))))---)))))	CAGUUAGACGAAGCCGAAGAAGAAG&CUUCUUCUUCG-CUUCG---GAUUG	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN10393_c0_g1_5885_TPlot.pdf
TRINITY_DN10393_c0_g1:6224	si_a300	TRINITY_DN10393_c0_g1	6213	6233	6224	-28.20	-19.40	0.687943262411348	17	8-18,6226-6216	1-7,6233-6227[UP5];19-21,6215-6213[UP3]	...(((((((((((.......&.......)))))))))))...	UUACCAAGCGAGUCGCUUCUU&UAAAAAAGAUUCGCUUGGAUU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN10393_c0_g1_6224_TPlot.pdf
TRINITY_DN1039_c0_g1:2563	si_s807	TRINITY_DN1039_c0_g1	2550	2572	2563	-28.90	-19.50	0.674740484429066	11	1-10,2572-2563;11-18,2560-2553	x-x,2562-2561[BULt];19-21,2552-2550[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	UUUGAGGAGGUCUGAUGAAGGUA&UAUCUUCGUU--ACCUUUUCUUA	2	0.999976095820792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1039_c0_g1_2563_TPlot.pdf
TRINITY_DN1039_c0_g1:2564	si_s806	TRINITY_DN1039_c0_g1	2551	2573	2564	-28.60	-19.70	0.688811188811189	11	2-11,2572-2563;12-19,2560-2553	1-1,2573-2573[UP5];x-x,2562-2561[BULt];20-21,2552-2551[UP3]	..((((((((..((((((((((.&.))))))))))--))))))))..	UUGAGGAGGUCUGAUGAAGGUAU&UUAUCUUCGUU--ACCUUUUCUU	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1039_c0_g1_2564_TPlot.pdf
TRINITY_DN1039_c0_g1:820	si_s883	TRINITY_DN1039_c0_g1	810	829	820	-24.30	-16.00	0.65843621399177	9	3-10,827-820;13-21,818-810	1-2,829-828[UP5];11-12,819-819[AILq]	(((((((((.-((((((((..&..))))))))..)))))))))	AAGGCCUGUC-AUUUUUGGAC&AACUAAAAAUAAAUAGGCUUU	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN1039_c0_g1_820_TPlot.pdf
TRINITY_DN103_c1_g1:2747	si_a761	TRINITY_DN103_c1_g1	2736	2760	2747	-30.10	-20.20	0.67109634551495	15.5	1-9,2760-2752;10-15,2747-2742;18-20,2739-2737	x-x,2751-2748[BULt];16-17,2741-2740[SIL];21-21,2736-2736[UP3]	.(((..((((((....(((((((((&)))))))))----))))))..))).	UGUCCUUCAGGAUAUAGCCCAAGGG&CCUUUGGGU----UUUUGAUUGAUU	2	0.999962114789459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN103_c1_g1_2747_TPlot.pdf
TRINITY_DN103_c1_g1:2752	si_a760	TRINITY_DN103_c1_g1	2737	2761	2752	-31.10	-21.80	0.70096463022508	14	1-10,2761-2752;11-16,2747-2742;19-21,2739-2737	x-x,2751-2748[BULt];17-18,2741-2740[SIL]	(((..((((((....((((((((((&))))))))))----))))))..)))	GUCCUUCAGGAUAUAGCCCAAGGGA&UCCUUUGGGU----UUUUGAUUGAU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN103_c1_g1_2752_TPlot.pdf
TRINITY_DN103_c1_g1:2770	si_s70	TRINITY_DN103_c1_g1	2759	2778	2770	-25.80	-17.70	0.686046511627907	6	2-6,2777-2773;8-12,2772-2768;14-21,2766-2759	1-1,2778-2778[UP5];7-7,x-x[BULq];13-13,2767-2767[SIL]	((((((((.(((((-(((((.&.))))).))))).))))))))	GGAAAGAACGAAGA-AGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN103_c1_g1_2770_TPlot.pdf
TRINITY_DN103_c2_g1:1690	si_a677	TRINITY_DN103_c2_g1	1679	1699	1690	-35.40	-23.30	0.65819209039548	7	1-5,1699-1695;8-19,1692-1681	6-7,1694-1693[SIL];20-21,1680-1679[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	GCAGACUGCGUGAAAUAGGAA&UUCCUUAUUCACGCGGUUUCG	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN103_c2_g1_1690_TPlot.pdf
TRINITY_DN103_c2_g1:1696	si_a671	TRINITY_DN103_c2_g1	1685	1705	1696	-32.10	-22.70	0.707165109034268	6	1-11,1705-1695;14-21,1692-1685	12-13,1694-1693[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	UGCGUGAAAUAGGAAUUGAUG&UAUUGAUUCCUUAUUCACGCG	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a671_TRINITY_DN103_c2_g1_1696_TPlot.pdf
TRINITY_DN10400_c0_g1:56	si_a401	TRINITY_DN10400_c0_g1	45	65	56	-22.60	-14.80	0.654867256637168	9.5	1-17,65-49	18-21,48-45[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACCCAGACAGAAUAGUUUUGU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999998855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN10400_c0_g1_56_TPlot.pdf
TRINITY_DN10400_c0_g3:187	si_s59	TRINITY_DN10400_c0_g3	177	196	187	-29.20	-21.30	0.729452054794521	8	1-11,196-186;13-18,185-180	12-12,x-x[BULq];19-21,179-177[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CUCUAGGGG-UGCUGGCUUGA&UCAAGUUAGCAACUUCUAUUU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN10400_c0_g3_187_TPlot.pdf
TRINITY_DN10400_c0_g3:188	si_s58	TRINITY_DN10400_c0_g3	178	197	188	-29.30	-21.40	0.73037542662116	7	2-12,196-186;14-19,185-180	1-1,197-197[UP5];13-13,x-x[BULq];20-21,179-178[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UCUAGGGG-UGCUGGCUUGAC&UUCAAGUUAGCAACUUCUAUU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN10400_c0_g3_188_TPlot.pdf
TRINITY_DN10400_c0_g3:189	si_s57	TRINITY_DN10400_c0_g3	179	198	189	-29.30	-21.40	0.73037542662116	8	3-13,196-186;15-20,185-180	1-2,198-197[UP5];14-14,x-x[BULq];21-21,179-179[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CUAGGGG-UGCUGGCUUGACA&UUUCAAGUUAGCAACUUCUAU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN10400_c0_g3_189_TPlot.pdf
TRINITY_DN10404_c0_g1:240	si_a409	TRINITY_DN10404_c0_g1	229	249	240	-19.50	-13.70	0.702564102564103	3	1-7,249-243;9-16,241-234;18-21,232-229	8-8,242-242[SIL];17-17,233-233[SIL]	((((.((((((((.(((((((&))))))).)))))))).))))	UUAUAUAAAUAUACACAAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999775391228409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10404_c0_g1_240_TPlot.pdf
TRINITY_DN10406_c0_g1:11017	si_a494	TRINITY_DN10406_c0_g1	11006	11028	11017	-29.50	-19.50	0.661016949152542	15.5	6-9,11023-11020;10-21,11017-11006	1-5,11028-11024[UP5];x-x,11019-11018[BULt]	((((((((((((..((((.....&.....))))--))))))))))))	GAGGGCGAGAGAUCCGACUGGCU&AAUAUGUCG--UUUUUCGUCUUC	4	0.999999999999331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN10406_c0_g1_11017_TPlot.pdf
TRINITY_DN10406_c0_g1:1697	si_a119	TRINITY_DN10406_c0_g1	1686	1706	1697	-30.30	-20.60	0.67986798679868	9.5	1-14,1706-1693;16-18,1691-1689	15-15,1692-1692[SIL];19-21,1688-1686[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	ACGUGCGGUGGGACGAGUUCG&CGAGCUUGUUUUAUAGCAAUA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN10406_c0_g1_1697_TPlot.pdf
TRINITY_DN10406_c0_g1:1703	si_a113	TRINITY_DN10406_c0_g1	1692	1712	1703	-26.20	-17.20	0.656488549618321	15.5	7-20,1706-1693	1-6,1712-1707[UP5];21-21,1692-1692[UP3]	.((((((((((((((......&......)))))))))))))).	GGUGGGACGAGUUCGCGCCGC&AAAAUACGAGCUUGUUUUAUA	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN10406_c0_g1_1703_TPlot.pdf
TRINITY_DN10406_c0_g1:2174	si_a50	TRINITY_DN10406_c0_g1	2163	2183	2174	-41.50	-30.30	0.730120481927711	7	2-4,2182-2180;6-19,2178-2165	1-1,2183-2183[UP5];5-5,2179-2179[SIL];20-21,2164-2163[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	CUGUGGGUCGGCUCCUCGACA&GGUCUAGGAGUCGACUCGCUU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN10406_c0_g1_2174_TPlot.pdf
TRINITY_DN10406_c0_g1:4054	si_s78	TRINITY_DN10406_c0_g1	4043	4064	4054	-26.20	-17.10	0.652671755725191	15.5	5-9,4060-4056;11-21,4053-4043	1-4,4064-4061[UP5];10-10,4055-4054[AILt]	(((((((((((..(((((....&....)))))-.)))))))))))	AGAGGAAAGGGCUGGAGGCUCU&UUUUUUUCU-UUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10406_c0_g1_4054_TPlot.pdf
TRINITY_DN10406_c0_g1:5111	si_s26	TRINITY_DN10406_c0_g1	5100	5119	5111	-26.70	-17.40	0.651685393258427	6	1-4,5119-5116;6-13,5115-5108;16-21,5105-5100	5-5,x-x[BULq];14-15,5107-5106[SIL]	((((((..((((((((-((((&)))).))))))))..))))))	AAGGAUGCGGUUGCGA-CAAU&AUUGAUUGCAACUAAAUCUUU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN10406_c0_g1_5111_TPlot.pdf
TRINITY_DN10406_c0_g1:5952	si_s839	TRINITY_DN10406_c0_g1	5941	5962	5952	-32.90	-21.70	0.659574468085106	9.5	1-1,5962-5962;4-7,5959-5956;8-19,5954-5943	2-3,5961-5960[SIL];x-x,5955-5955[BULt];20-21,5942-5941[UP3]	..((((((((((((.((((..(&)..))))-))))))))))))..	AAGCUCGCUUCUUUGCGAAGGG&CAAUUUG-AAAGAAGCGAGUCG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s839_TRINITY_DN10406_c0_g1_5952_TPlot.pdf
TRINITY_DN10406_c0_g1:6153	si_s76	TRINITY_DN10406_c0_g1	6142	6162	6153	-23.60	-16.40	0.694915254237288	16	8-19,6155-6144	1-7,6162-6156[UP5];20-21,6143-6142[UP3]	..((((((((((((.......&.......))))))))))))..	UCGAGAGGGAAGAAUCGGUCA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10406_c0_g1_6153_TPlot.pdf
TRINITY_DN10406_c0_g1:6154	si_s75	TRINITY_DN10406_c0_g1	6143	6163	6154	-24.00	-16.40	0.683333333333333	17	9-20,6155-6144	1-8,6163-6156[UP5];21-21,6143-6143[UP3]	.((((((((((((........&........)))))))))))).	CGAGAGGGAAGAAUCGGUCAU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10406_c0_g1_6154_TPlot.pdf
TRINITY_DN10406_c0_g1:6788	si_a412	TRINITY_DN10406_c0_g1	6777	6797	6788	-18.30	-12.60	0.688524590163934	8.5	3-11,6795-6787;14-20,6784-6778	1-2,6797-6796[UP5];12-13,6786-6785[SIL];21-21,6777-6777[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	AAUUUGUUGUAAUAUAAGCUC&UUGUUUAUAUUUAAAUAAAUA	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN10406_c0_g1_6788_TPlot.pdf
TRINITY_DN10406_c0_g1:8092	si_s69	TRINITY_DN10406_c0_g1	8081	8101	8092	-23.40	-15.80	0.675213675213675	11	4-13,8098-8089;16-21,8086-8081	1-3,8101-8099[UP5];14-15,8088-8087[SIL]	((((((..((((((((((...&...))))))))))..))))))	GAAAGAUUAAGGAUGGAGAGC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10406_c0_g1_8092_TPlot.pdf
TRINITY_DN10406_c0_g1:8195	si_s96	TRINITY_DN10406_c0_g1	8184	8207	8195	-37.20	-25.60	0.688172043010753	12	1-6,8207-8202;7-17,8198-8188;19-21,8186-8184	x-x,8201-8199[BULt];18-18,8187-8187[SIL]	(((.(((((((((((...((((((&))))))---))))))))))).)))	UCUUGUCCGGGGCGGACCGGAAGA&UCUUCU---UCGCUUCGGAUUGGA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN10406_c0_g1_8195_TPlot.pdf
TRINITY_DN10406_c0_g1:8365	si_s102	TRINITY_DN10406_c0_g1	8354	8374	8365	-34.10	-22.30	0.653958944281525	9	1-12,8374-8363;14-14,8361-8361	13-13,8362-8362[SIL];15-21,8360-8354[UP3]	.......(.((((((((((((&)))))))))))).).......	CGAUAAGCGAAUCCGAGGCGA&UCGCUUCGGAUUGGAAAAUAG	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN10406_c0_g1_8365_TPlot.pdf
TRINITY_DN10406_c0_g1:8725	si_a328	TRINITY_DN10406_c0_g1	8714	8734	8725	-30.10	-19.80	0.6578073089701	19	10-21,8725-8714	1-9,8734-8726[UP5]	((((((((((((.........&.........))))))))))))	GGGGCGAGGAGUUCGUCGCCA&GAUUUUUUUAUUCCUUGUCCC	4	0.999999977459052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN10406_c0_g1_8725_TPlot.pdf
TRINITY_DN10406_c0_g1:8779	si_a767	TRINITY_DN10406_c0_g1	8767	8788	8779	-30.10	-20.00	0.664451827242525	8.5	2-16,8787-8773;19-21,8769-8767	1-1,8788-8788[UP5];17-18,8772-8770[AILt]	(((...(((((((((((((((.&.)))))))))))))))-..)))	GAGGCCGAGUUGAUCAGAGACG&GGUUUUUGAUUGAUUC-AACUC	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN10406_c0_g1_8779_TPlot.pdf
TRINITY_DN10406_c0_g1:8816	si_s896	TRINITY_DN10406_c0_g1	8805	8826	8816	-31.60	-20.70	0.65506329113924	8	2-9,8825-8818;10-14,8816-8812;17-21,8809-8805	1-1,8826-8826[UP5];x-x,8817-8817[BULt];15-16,8811-8810[SIL]	(((((..(((((.((((((((.&.))))))))-)))))..)))))	UGGAGCGGAAGAGGGAGGCCUC&UAGGCUUUC-UCUUCAAUUUCA	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN10406_c0_g1_8816_TPlot.pdf
TRINITY_DN10406_c0_g1:8971	si_a298	TRINITY_DN10406_c0_g1	8960	8980	8971	-28.10	-19.30	0.686832740213523	8.5	1-6,8980-8975;9-18,8972-8963;20-20,8961-8961	7-8,8974-8973[SIL];19-19,8962-8962[SIL];21-21,8960-8960[UP3]	.(.((((((((((..((((((&))))))..)))))))))).).	ACGAGGCGAAUCUGGUUUGGA&UUUAAAAAAGAUUCGCUUGGA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN10406_c0_g1_8971_TPlot.pdf
TRINITY_DN10406_c0_g1:9809	si_s155	TRINITY_DN10406_c0_g1	9798	9826	9809	-42.00	-27.60	0.657142857142857	24	3-9,9824-9818;10-11,9809-9808;13-21,9806-9798	1-2,9826-9825[UP5];x-x,9817-9810[BULt];12-12,9807-9807[SIL]	(((((((((.((........(((((((..&..)))))))--------)).)))))))))	CCCUGGCCAAGGCAGAGGAGGCCUCUUGC&AAAGGAGGU--------UCAUGGCCAGGG	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN10406_c0_g1_9809_TPlot.pdf
TRINITY_DN10406_c2_g1:1033	si_a631	TRINITY_DN10406_c2_g1	1023	1042	1033	-25.70	-16.80	0.653696498054475	6.5	3-12,1040-1031;16-21,1028-1023	1-2,1042-1041[UP5];13-15,1030-1029[AILq]	((((((..-((((((((((..&..))))))))))...))))))	CUCAAGCU-AUCGACAUAACU&UAUUAUGUCGAUUUUUUUGAG	4	0.9999999783707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN10406_c2_g1_1033_TPlot.pdf
TRINITY_DN1040_c0_g1:1104	si_a787	TRINITY_DN1040_c0_g1	1093	1113	1104	-26.30	-17.40	0.661596958174905	6	2-15,1112-1099;18-19,1096-1095	1-1,1113-1113[UP5];16-17,1098-1097[SIL];20-21,1094-1093[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	CCGAUUAUAGAAAAGUAGAAA&CUUCUAUUUUUCUAUUUUCCA	2	0.999999999180213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1040_c0_g1_1104_TPlot.pdf
TRINITY_DN1040_c0_g1:1105	si_a786	TRINITY_DN1040_c0_g1	1094	1114	1105	-26.60	-17.40	0.654135338345865	7	3-16,1112-1099;19-20,1096-1095	1-2,1114-1113[UP5];17-18,1098-1097[SIL];21-21,1094-1094[UP3]	.((..((((((((((((((..&..))))))))))))))..)).	CGAUUAUAGAAAAGUAGAAAC&UCUUCUAUUUUUCUAUUUUCC	2	0.999999999954891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1040_c0_g1_1105_TPlot.pdf
TRINITY_DN10413_c0_g1:269	si_a759	TRINITY_DN10413_c0_g1	257	278	269	-32.60	-23.70	0.726993865030675	6.5	1-13,278-266;14-20,264-258	x-x,265-265[BULt];21-21,257-257[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	GCAAUCAAUGAAUUCGAGGGAG&CUCCUUUGGGUUU-UUGAUUGA	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN10413_c0_g1_269_TPlot.pdf
TRINITY_DN10413_c0_g1:270	si_a758	TRINITY_DN10413_c0_g1	258	279	270	-34.00	-26.50	0.779411764705882	5.5	1-14,279-266;15-21,264-258	x-x,265-265[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	CAAUCAAUGAAUUCGAGGGAGG&CCUCCUUUGGGUUU-UUGAUUG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN10413_c0_g1_270_TPlot.pdf
TRINITY_DN1041_c0_g1:1349	si_s71	TRINITY_DN1041_c0_g1	1338	1355	1349	-25.70	-17.72	0.689494163424125	11.5	1-7,1355-1349;13-21,1346-1338	8-12,1348-1347[AILq]	(((((((((..---(((((((&))))))).....)))))))))	GGGAAAGAACU---GUAGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1041_c0_g1_1349_TPlot.pdf
TRINITY_DN1041_c0_g1:1423	si_a126	TRINITY_DN1041_c0_g1	1413	1432	1423	-24.70	-16.80	0.680161943319838	4.5	1-12,1432-1421;14-21,1420-1413	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	UAAUUAUU-UUGUUGUAGAAC&GUUUUAUAGCAAUAGUAAUUA	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN1041_c0_g1_1423_TPlot.pdf
TRINITY_DN10420_c0_g1:406	si_s809	TRINITY_DN10420_c0_g1	395	417	406	-28.50	-18.60	0.652631578947368	13	1-7,417-411;9-18,407-398	8-8,410-408[AILt];19-21,397-395[UP3]	...((((((((((...(((((((&)))))))--.))))))))))...	CAAAAGGGAGGGUUCCGCGGAGA&UCUUCGU--UACCUUUUCUUAAU	4	0.999999999996209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN10420_c0_g1_406_TPlot.pdf
TRINITY_DN10422_c4_g1:53	si_a637	TRINITY_DN10422_c4_g1	42	62	53	-25.80	-17.00	0.65891472868217	7.5	1-1,62-62;3-14,60-49;17-21,46-42	2-2,61-61[SIL];15-16,48-47[SIL]	(((((..((((((((((((.(&).))))))))))))..)))))	AUGUUCGUCGAGAAGAUCGUC&GUCGAUUUUUUUGAGUAAUAU	4	0.99999999986239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN10422_c4_g1_53_TPlot.pdf
TRINITY_DN10426_c0_g2:179	si_s1	TRINITY_DN10426_c0_g2	168	188	179	-18.70	-13.30	0.711229946524064	9	4-8,185-181;10-21,179-168	1-3,188-186[UP5];9-9,180-180[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UGGUAAUAAGUGUUAUAACUA&UUUUUAUAUUACUUAUUAUUA	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN10426_c0_g2_179_TPlot.pdf
TRINITY_DN10426_c0_g2:291	si_s68	TRINITY_DN10426_c0_g2	280	300	291	-23.10	-18.60	0.805194805194805	9	4-21,297-280	1-3,300-298[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGGGAAAGAAGAUAGGAGAAA&CAACUUCUAUUUUUUUUCUUU	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10426_c0_g2_291_TPlot.pdf
TRINITY_DN10426_c0_g2:293	si_s66	TRINITY_DN10426_c0_g2	282	302	293	-26.30	-17.60	0.669201520912548	11.5	6-21,297-282	1-5,302-298[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAAAGAAGAUAGGAGAAAUA&AGCAACUUCUAUUUUUUUUCU	4	0.999999973411668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN10426_c0_g2_293_TPlot.pdf
TRINITY_DN10426_c0_g2:302	si_a782	TRINITY_DN10426_c0_g2	291	311	302	-26.40	-17.40	0.659090909090909	11	5-18,307-294	1-4,311-308[UP5];19-21,293-291[UP3]	...((((((((((((((....&....))))))))))))))...	AUAGGAGAAAUAGAAGAAAGA&CAACUCUUCUAUUUUUCUAUU	4	0.999999999525165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN10426_c0_g2_302_TPlot.pdf
TRINITY_DN10426_c1_g1:494	si_s307	TRINITY_DN10426_c1_g1	483	503	494	-32.90	-25.00	0.759878419452888	5.5	1-8,503-496;10-21,494-483	9-9,495-495[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AGAAGGGCAGGAAUUUUGUAA&UUGCGAAAAUUCUGUCCUUCU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN10426_c1_g1_494_TPlot.pdf
TRINITY_DN10426_c1_g1:495	si_s306	TRINITY_DN10426_c1_g1	484	504	495	-32.30	-23.70	0.73374613003096	6.5	2-9,503-496;11-21,494-484	1-1,504-504[UP5];10-10,495-495[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	GAAGGGCAGGAAUUUUGUAAC&AUUGCGAAAAUUCUGUCCUUC	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN10426_c1_g1_495_TPlot.pdf
TRINITY_DN10438_c0_g1:1282	si_a398	TRINITY_DN10438_c0_g1	1271	1291	1282	-22.40	-17.80	0.794642857142857	8	3-18,1289-1274	1-2,1291-1290[UP5];19-21,1273-1271[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUACAAAACAAUUCUGUGAC&AAUAUAGAAUUGUUUUGUUUA	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN10438_c0_g1_1282_TPlot.pdf
TRINITY_DN10438_c0_g1:1286	si_a394	TRINITY_DN10438_c0_g1	1275	1295	1286	-24.30	-16.70	0.687242798353909	13	7-21,1289-1275	1-6,1295-1290[UP5]	(((((((((((((((......&......)))))))))))))))	CAAAACAAUUCUGUGACAGAG&UAAGAAUAUAGAAUUGUUUUG	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN10438_c0_g1_1286_TPlot.pdf
TRINITY_DN10438_c2_g1:498	si_a870	TRINITY_DN10438_c2_g1	487	507	498	-24.80	-16.60	0.669354838709677	9	4-17,504-491	1-3,507-505[UP5];18-21,490-487[UP3]	....((((((((((((((...&...))))))))))))))....	GACACAACUAAAUCUUUAGAA&UAUUAAAGAUUUAGUUGCAAU	2	0.971549756688101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN10438_c2_g1_498_TPlot.pdf
TRINITY_DN10438_c2_g1:500	si_a868	TRINITY_DN10438_c2_g1	489	509	500	-24.80	-16.60	0.669354838709677	11	6-19,504-491	1-5,509-505[UP5];20-21,490-489[UP3]	..((((((((((((((.....&.....))))))))))))))..	CACAACUAAAUCUUUAGAAAG&AUUAUUAAAGAUUUAGUUGCA	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN10438_c2_g1_500_TPlot.pdf
TRINITY_DN10438_c2_g1:502	si_a866	TRINITY_DN10438_c2_g1	491	511	502	-23.30	-16.60	0.712446351931331	13	8-21,504-491	1-7,511-505[UP5]	((((((((((((((.......&.......))))))))))))))	CAACUAAAUCUUUAGAAAGUC&CAAUUAUUAAAGAUUUAGUUG	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN10438_c2_g1_502_TPlot.pdf
TRINITY_DN10438_c2_g1:645	si_s75	TRINITY_DN10438_c2_g1	634	659	645	-24.00	-16.90	0.704166666666667	16	1-9,659-651;10-20,645-635	x-x,650-646[BULt];21-21,634-634[UP3]	.(((((((((((.....(((((((((&)))))))))-----))))))))))).	UGAAAGGGAAGAUGAGUGGGAAGAUG&UAUUUUUUU-----UCUUUCCUUUCU	2	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10438_c2_g1_645_TPlot.pdf
TRINITY_DN1043_c0_g1:728	si_s158	TRINITY_DN1043_c0_g1	717	742	728	-44.90	-29.90	0.665924276169265	14.5	1-9,742-734;10-19,728-719	x-x,733-729[BULt];20-21,718-717[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	CCCUCUUGGCCACUAGUUGAGCCUCU&GGAGGUUCA-----UGGCCAGGGGUA	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN1043_c0_g1_728_TPlot.pdf
TRINITY_DN1043_c0_g1:986	si_a67	TRINITY_DN1043_c0_g1	975	999	986	-27.20	-18.20	0.669117647058823	13	1-7,999-993;8-18,988-978	x-x,992-989[BULt];19-21,977-975[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UUUAGACGAUUUGACUACAAGGAGC&GCUUCUU----UCAAAUUGUUUUUC	4	0.999999999922797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1043_c0_g1_986_TPlot.pdf
TRINITY_DN10441_c0_g1:1436	si_a756	TRINITY_DN10441_c0_g1	1424	1445	1436	-33.10	-21.80	0.658610271903323	11.5	4-7,1442-1439;9-12,1437-1434;13-21,1432-1424	1-3,1445-1443[UP5];8-8,1438-1438[SIL];x-x,1433-1433[BULt]	(((((((((.((((.((((...&...)))).))))-)))))))))	GUCAAGAGCACCGAUGGAGACG&AACCUCCUUUGG-GUUUUUGAU	4	0.999999998292486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN10441_c0_g1_1436_TPlot.pdf
TRINITY_DN10441_c0_g1:909	si_s896	TRINITY_DN10441_c0_g1	898	921	909	-31.60	-24.20	0.765822784810127	13	3-7,919-915;8-20,911-899	1-2,921-920[UP5];x-x,914-912[BULt];21-21,898-898[UP3]	.(((((((((((((...(((((..&..)))))---))))))))))))).	AGAGGUUGAAGAGAUGCGGGCCAA&UAGGCUU---UCUCUUCAAUUUCA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN10441_c0_g1_909_TPlot.pdf
TRINITY_DN10441_c0_g3:132	si_s828	TRINITY_DN10441_c0_g3	121	141	132	-21.90	-15.00	0.684931506849315	9.5	4-12,138-130;15-19,127-123	1-3,141-139[UP5];13-14,129-128[SIL];20-21,122-121[UP3]	..(((((..(((((((((...&...)))))))))..)))))..	GCUCAGAGGGUUUUUCAUGAG&AUAAUGAAAAACAAUUUGAAA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN10441_c0_g3_132_TPlot.pdf
TRINITY_DN10441_c0_g3:133	si_s827	TRINITY_DN10441_c0_g3	122	142	133	-21.90	-15.00	0.684931506849315	10.5	5-13,138-130;16-20,127-123	1-4,142-139[UP5];14-15,129-128[SIL];21-21,122-122[UP3]	.(((((..(((((((((....&....)))))))))..))))).	CUCAGAGGGUUUUUCAUGAGA&AAUAAUGAAAAACAAUUUGAA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN10441_c0_g3_133_TPlot.pdf
TRINITY_DN10441_c0_g3:2307	si_s895	TRINITY_DN10441_c0_g3	2296	2317	2307	-31.10	-21.50	0.691318327974277	11.5	4-7,2314-2311;9-20,2308-2297	1-3,2317-2315[UP5];8-8,2310-2309[AILt];21-21,2296-2296[UP3]	.((((((((((((..((((...&...))))-.)))))))))))).	AGAGUUGGAGAGACUAGCCAAU&AUAGGCU-UUCUCUUCAAUUUC	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN10441_c0_g3_2307_TPlot.pdf
TRINITY_DN10441_c0_g3:2375	si_a62	TRINITY_DN10441_c0_g3	2366	2384	2375	-32.20	-23.08	0.716770186335404	6.5	1-13,2384-2372;18-21,2369-2366	14-17,2371-2370[AILq]	((((..--(((((((((((((&)))))))))))))....))))	GCAGGA--GAGGAAGCGAGUC&GACUCGCUUCUUUCAAAUUGU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN10441_c0_g3_2375_TPlot.pdf
TRINITY_DN10449_c0_g1:357	si_a639	TRINITY_DN10449_c0_g1	346	366	357	-23.60	-15.50	0.656779661016949	8	2-8,365-359;10-16,357-351;19-21,348-346	1-1,366-366[UP5];9-9,358-358[SIL];17-18,350-349[SIL]	(((..(((((((.(((((((.&.))))))).)))))))..)))	GUACUUUGCUCAUGAAGAUCC&CGAUUUUUUUGAGUAAUAUAU	4	0.999999998361545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN10449_c0_g1_357_TPlot.pdf
TRINITY_DN10449_c0_g1:561	si_a142	TRINITY_DN10449_c0_g1	550	570	561	-23.50	-15.40	0.65531914893617	16	8-19,563-552	1-7,570-564[UP5];20-21,551-550[UP3]	..((((((((((((.......&.......))))))))))))..	AAAAGACGACAACGGAAAUCU&AAUUAAUCGUUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN10449_c0_g1_561_TPlot.pdf
TRINITY_DN10449_c0_g1:620	si_a422	TRINITY_DN10449_c0_g1	609	629	620	-27.20	-18.00	0.661764705882353	6	1-18,629-612	19-21,611-609[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAAGGUUCUAUGUUUGUUUAA&UUAAAUAAAUAUAGGAUCCGU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN10449_c0_g1_620_TPlot.pdf
TRINITY_DN10449_c0_g1:622	si_a420	TRINITY_DN10449_c0_g1	611	631	622	-25.00	-18.70	0.748	5	2-20,630-612	1-1,631-631[UP5];21-21,611-611[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGGUUCUAUGUUUGUUUAAAC&AUUUAAAUAAAUAUAGGAUCC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN10449_c0_g1_622_TPlot.pdf
TRINITY_DN10449_c0_g1:624	si_a418	TRINITY_DN10449_c0_g1	613	633	624	-21.20	-16.40	0.773584905660377	7.5	4-21,630-613	1-3,633-631[UP5]	((((((((((((((((((...&...))))))))))))))))))	GUUCUAUGUUUGUUUAAACGG&AUAUUUAAAUAAAUAUAGGAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN10449_c0_g1_624_TPlot.pdf
TRINITY_DN1044_c0_g1:1693	si_a631	TRINITY_DN1044_c0_g1	1682	1703	1693	-25.70	-16.90	0.657587548638132	9	1-4,1703-1700;5-11,1698-1692;14-21,1689-1682	x-x,1699-1699[BULt];12-13,1691-1690[SIL]	((((((((..(((((((.((((&))))-)))))))..))))))))	CUCAAAGAUUUUGACGUCGAUG&UAUU-AUGUCGAUUUUUUUGAG	4	0.999999962234629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN1044_c0_g1_1693_TPlot.pdf
TRINITY_DN10454_c0_g1:2767	si_a46	TRINITY_DN10454_c0_g1	2755	2776	2767	-42.10	-33.10	0.786223277909739	6.5	1-10,2776-2767;11-20,2765-2756	x-x,2766-2766[BULt];21-21,2755-2755[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	UAGUCGGCUCUGUGGACCUGCC&GGUAGGUCUA-GGAGUCGACUC	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN10454_c0_g1_2767_TPlot.pdf
TRINITY_DN10454_c0_g1:2769	si_a44	TRINITY_DN10454_c0_g1	2757	2778	2769	-43.30	-32.30	0.745958429561201	8	3-12,2776-2767;13-21,2765-2757	1-2,2778-2777[UP5];x-x,2766-2766[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GUCGGCUCUGUGGACCUGCCCU&CCGGUAGGUCUA-GGAGUCGAC	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a44_TRINITY_DN10454_c0_g1_2769_TPlot.pdf
TRINITY_DN10460_c0_g1:14	si_a414	TRINITY_DN10460_c0_g1	3	21	14	-18.10	-11.80	0.651933701657459	10	1-3,21-19;6-20,18-4	4-5,x-x[BULq];21-21,3-3[UP3]	.(((((((((((((((--(((&)))..))))))))))))))).	CGUAUUUGUUUGGAUA--GGC&GUUUAUAUUUAAAUAAAUAUA	3	0.999999815717802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN10460_c0_g1_14_TPlot.pdf
TRINITY_DN10460_c0_g1:15	si_a413	TRINITY_DN10460_c0_g1	4	22	15	-18.40	-12.60	0.684782608695652	9	1-4,22-19;7-21,18-4	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GUAUUUGUUUGGAUA--GGCA&UGUUUAUAUUUAAAUAAAUAU	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN10460_c0_g1_15_TPlot.pdf
TRINITY_DN1046_c0_g1:2886	si_s101	TRINITY_DN1046_c0_g1	2875	2895	2886	-32.50	-21.60	0.664615384615385	12	4-9,2892-2887;11-18,2885-2878	1-3,2895-2893[UP5];10-10,2886-2886[SIL];19-21,2877-2875[UP3]	...((((((((.((((((...&...)))))).))))))))...	UUCUUUCCAGUGCGGAGCAGG&UUCGCUUCGGAUUGGAAAAUA	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN1046_c0_g1_2886_TPlot.pdf
TRINITY_DN1046_c0_g1:3470	si_s648	TRINITY_DN1046_c0_g1	3459	3479	3470	-43.50	-29.34	0.67448275862069	10	2-9,3478-3471;15-20,3465-3460	1-1,3479-3479[UP5];10-14,3470-3466[SIL];21-21,3459-3459[UP3]	.((((((.....((((((((.&.)))))))).....)))))).	GCCCCGAGGCACUCGAGGGCU&UGCCCUCGAUACAAUCGGGGG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s648_TRINITY_DN1046_c0_g1_3470_TPlot.pdf
TRINITY_DN1046_c0_g1:3519	si_a762	TRINITY_DN1046_c0_g1	3504	3528	3519	-29.70	-19.48	0.655892255892256	16.5	1-11,3528-3518;13-21,3512-3504	12-12,3517-3513[AILt]	(((((((((.....(((((((((((&)))))))))))----.)))))))))	GAGUCAAUCCGGCUGGAGCUCAGGG&CUUUGGGUUUU----UGAUUGAUUC	4	0.999999999613727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1046_c0_g1_3519_TPlot.pdf
TRINITY_DN1046_c0_g1:3726	si_a29	TRINITY_DN1046_c0_g1	3715	3735	3726	-31.00	-20.40	0.658064516129032	15.5	7-19,3729-3717	1-6,3735-3730[UP5];20-21,3716-3715[UP3]	..(((((((((((((......&......)))))))))))))..	UUUCGGUCUUGGAGCCGUCCG&UUUUUAGUUCUAAGACCGGUA	4	0.996910853773391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN1046_c0_g1_3726_TPlot.pdf
TRINITY_DN1046_c0_g1:3727	si_a28	TRINITY_DN1046_c0_g1	3716	3736	3727	-30.70	-20.40	0.664495114006515	16.5	8-20,3729-3717	1-7,3736-3730[UP5];21-21,3716-3716[UP3]	.(((((((((((((.......&.......))))))))))))).	UUCGGUCUUGGAGCCGUCCGU&AUUUUUAGUUCUAAGACCGGU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN1046_c0_g1_3727_TPlot.pdf
TRINITY_DN1046_c0_g1:4507	si_a203	TRINITY_DN1046_c0_g1	4496	4516	4507	-26.90	-20.00	0.743494423791822	7	1-6,4516-4511;8-18,4509-4499	7-7,4510-4510[SIL];19-21,4498-4496[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	GCAUGGUCGAUUUAGUGGUGG&UCACUAAUAAAUCGACUAAUU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN1046_c0_g1_4507_TPlot.pdf
TRINITY_DN1046_c0_g1:5083	si_a577	TRINITY_DN1046_c0_g1	5072	5094	5083	-30.10	-20.58	0.683720930232558	10	1-8,5094-5087;11-12,5082-5081;14-21,5079-5072	9-10,5086-5083[AILt];13-13,5080-5080[SIL]	((((((((.((....((((((((&))))))))--..)).))))))))	CUUCUUGUCACUUGUACGUACGA&UCGUAUGU--UUGUAACAAGAAG	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a577_TRINITY_DN1046_c0_g1_5083_TPlot.pdf
TRINITY_DN1046_c0_g1:5162	si_s581	TRINITY_DN1046_c0_g1	5151	5171	5162	-22.40	-14.80	0.660714285714286	5.5	2-14,5170-5158;16-19,5156-5153	1-1,5171-5171[UP5];15-15,5157-5157[SIL];20-21,5152-5151[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	GGUGUCAAUGAUUUUUUUGUA&AAUAAAAAAAUCAUGGAUAAA	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s581_TRINITY_DN1046_c0_g1_5162_TPlot.pdf
TRINITY_DN1046_c0_g1:5335	si_s121	TRINITY_DN1046_c0_g1	5324	5344	5335	-27.00	-18.90	0.7	5.5	1-12,5344-5333;14-17,5331-5328;19-19,5326-5326	13-13,5332-5332[SIL];18-18,5327-5327[SIL];20-21,5325-5324[UP3]	..(.((((.((((((((((((&)))))))))))).)))).)..	CCUGAGCUGUUCUGUUUUUCU&AGAAAAAUAGAAGAGUUGAAU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN1046_c0_g1_5335_TPlot.pdf
TRINITY_DN1046_c0_g1:5336	si_s120	TRINITY_DN1046_c0_g1	5325	5345	5336	-27.30	-18.90	0.692307692307692	5.5	2-13,5344-5333;15-18,5331-5328;20-20,5326-5326	1-1,5345-5345[UP5];14-14,5332-5332[SIL];19-19,5327-5327[SIL];21-21,5325-5325[UP3]	.(.((((.((((((((((((.&.)))))))))))).)))).).	CUGAGCUGUUCUGUUUUUCUC&UAGAAAAAUAGAAGAGUUGAA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s120_TRINITY_DN1046_c0_g1_5336_TPlot.pdf
TRINITY_DN1046_c0_g1:5339	si_s117	TRINITY_DN1046_c0_g1	5328	5348	5339	-24.70	-17.90	0.724696356275304	9.5	5-16,5344-5333;18-21,5331-5328	1-4,5348-5345[UP5];17-17,5332-5332[SIL]	((((.((((((((((((....&....)))))))))))).))))	AGCUGUUCUGUUUUUCUCCUC&AAAUAGAAAAAUAGAAGAGUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN1046_c0_g1_5339_TPlot.pdf
TRINITY_DN1046_c0_g1:5340	si_s116	TRINITY_DN1046_c0_g1	5329	5349	5340	-24.70	-17.10	0.692307692307692	11	6-17,5344-5333;19-21,5331-5329	1-5,5349-5345[UP5];18-18,5332-5332[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GCUGUUCUGUUUUUCUCCUCU&AAAAUAGAAAAAUAGAAGAGU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN1046_c0_g1_5340_TPlot.pdf
TRINITY_DN1046_c0_g1:5549	si_s881	TRINITY_DN1046_c0_g1	5535	5558	5549	-27.00	-17.64	0.653333333333333	7	1-13,5558-5546;15-20,5541-5536	14-14,5545-5542[AILt];21-21,5535-5535[UP3]	.((((((....(((((((((((((&)))))))))))))---.)))))).	CGCUUGUAUACUGUUUUUAGUUCU&AGAACUAAAAAUA---AAUAGGCU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s881_TRINITY_DN1046_c0_g1_5549_TPlot.pdf
TRINITY_DN1046_c1_g1:762	si_a408	TRINITY_DN1046_c1_g1	751	771	762	-20.10	-13.50	0.671641791044776	6	1-12,771-760;14-18,758-754	13-13,759-759[SIL];19-21,753-751[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AAAUUAGGGGUAAACAAAACA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN1046_c1_g1_762_TPlot.pdf
TRINITY_DN1046_c1_g1:763	si_a407	TRINITY_DN1046_c1_g1	752	772	763	-19.80	-13.70	0.691919191919192	5.5	2-13,771-760;15-19,758-754	1-1,772-772[UP5];14-14,759-759[SIL];20-21,753-752[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AAUUAGGGGUAAACAAAACAU&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999971826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1046_c1_g1_763_TPlot.pdf
TRINITY_DN1046_c1_g1:764	si_a406	TRINITY_DN1046_c1_g1	753	773	764	-19.80	-13.70	0.691919191919192	6.5	3-14,771-760;16-20,758-754	1-2,773-772[UP5];15-15,759-759[SIL];21-21,753-753[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AUUAGGGGUAAACAAAACAUA&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999999947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1046_c1_g1_764_TPlot.pdf
TRINITY_DN10472_c0_g1:151	si_s596	TRINITY_DN10472_c0_g1	138	160	151	-30.40	-19.90	0.654605263157895	11	1-10,160-151;12-19,147-140	11-11,150-148[AILt];20-21,139-138[UP3]	..((((((((...((((((((((&))))))))))--.))))))))..	AUGGAUUUGUGGAUGGAUUUGUC&GAUAAAUCCA--AGCGAAUCUUU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s596_TRINITY_DN10472_c0_g1_151_TPlot.pdf
TRINITY_DN10473_c0_g2:82	si_s69	TRINITY_DN10473_c0_g2	71	92	82	-23.40	-15.42	0.658974358974359	12.5	1-7,92-86;11-21,81-71	8-10,85-82[AILt]	(((((((((((....(((((((&)))))))-...)))))))))))	GGAGGAAGAGGUUGAAGAGGUU&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10473_c0_g2_82_TPlot.pdf
TRINITY_DN10473_c0_g2:854	si_a896	TRINITY_DN10473_c0_g2	843	863	854	-21.60	-15.00	0.694444444444444	5	1-12,863-852;14-19,850-845	13-13,851-851[SIL];20-21,844-843[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	CAGUGUUAAUUGUUAUUACUA&UAGUAAUAAUAAGUAAUAUAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN10473_c0_g2_854_TPlot.pdf
TRINITY_DN10475_c0_g1:189	si_s525	TRINITY_DN10475_c0_g1	178	197	189	-24.00	-16.80	0.7	6	3-9,195-189;11-21,188-178	1-2,197-196[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	GUUAAAAAUGA-UUCGAAUGG&UAAUUCGAAAUCAUUUUUGAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN10475_c0_g1_189_TPlot.pdf
TRINITY_DN10477_c0_g1:620	si_s87	TRINITY_DN10477_c0_g1	607	629	620	-32.90	-22.10	0.671732522796353	10	1-10,629-620;12-20,616-608	11-11,619-617[AILt];21-21,607-607[UP3]	.(((((((((...((((((((((&))))))))))--.))))))))).	CGGUGAAGAAACUAGGAGAGGAA&UUCCUUUCUU--CUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN10477_c0_g1_620_TPlot.pdf
TRINITY_DN10477_c0_g1:624	si_s78	TRINITY_DN10477_c0_g1	610	633	624	-26.20	-20.60	0.786259541984733	7.5	1-14,633-620;15-20,616-611	x-x,619-617[BULt];21-21,610-610[UP3]	.((((((...((((((((((((((&))))))))))))))---)))))).	UGAAGAAACUAGGAGAGGAAGAAG&UUUUUUUCUUUCCU---UUCUUCU	4	0.999998837853321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10477_c0_g1_624_TPlot.pdf
TRINITY_DN10479_c0_g1:1086	si_s607	TRINITY_DN10479_c0_g1	1074	1095	1086	-27.60	-20.00	0.72463768115942	7.5	1-13,1095-1083;16-19,1079-1076	14-15,1082-1080[AILt];20-21,1075-1074[UP3]	..((((...(((((((((((((&)))))))))))))-..))))..	AAGGGUCCCAGAAGAGAUUCGC&GCGAAUCUUUUUU-AAAUCCAA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN10479_c0_g1_1086_TPlot.pdf
TRINITY_DN10479_c0_g1:1087	si_s606	TRINITY_DN10479_c0_g1	1075	1096	1087	-28.20	-21.40	0.75886524822695	6	1-14,1096-1083;17-20,1079-1076	15-16,1082-1080[AILt];21-21,1075-1075[UP3]	.((((...((((((((((((((&))))))))))))))-..)))).	AGGGUCCCAGAAGAGAUUCGCU&AGCGAAUCUUUUUU-AAAUCCA	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN10479_c0_g1_1087_TPlot.pdf
TRINITY_DN1047_c0_g1:1044	si_a79	TRINITY_DN1047_c0_g1	1034	1053	1044	-22.20	-16.10	0.725225225225225	7	1-12,1053-1042;14-20,1041-1035	13-13,x-x[BULq];21-21,1034-1034[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	GUUCUUAA-AGUGGGGAGCAA&UUGUUUUUCAUUAUUAAGAAA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1047_c0_g1_1044_TPlot.pdf
TRINITY_DN1047_c0_g1:1046	si_a77	TRINITY_DN1047_c0_g1	1036	1055	1046	-22.20	-15.10	0.68018018018018	8.5	3-14,1053-1042;16-21,1041-1036	1-2,1055-1054[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UCUUAA-AGUGGGGAGCAAAA&AAUUGUUUUUCAUUAUUAAGA	3	0.999988774176646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN1047_c0_g1_1046_TPlot.pdf
TRINITY_DN1047_c0_g1:1229	si_a799	TRINITY_DN1047_c0_g1	1218	1238	1229	-32.50	-21.80	0.670769230769231	9	2-18,1237-1221	1-1,1238-1238[UP5];19-21,1220-1218[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GGAGUUUUGGGUUGGGGAGUU&UAUUUUCCAAUCCGAAGCGAA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN1047_c0_g1_1229_TPlot.pdf
TRINITY_DN1047_c0_g1:1234	si_a850	TRINITY_DN1047_c0_g1	1222	1243	1234	-29.00	-19.10	0.658620689655173	12	1-10,1243-1234;13-19,1230-1224	11-12,1233-1231[AILt];20-21,1223-1222[UP3]	..(((((((...((((((((((&))))))))))-..)))))))..	UUUUGGGUUGGGGAGUUGGCGG&UUGCUAACUU-GAAAUCCAAUU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN1047_c0_g1_1234_TPlot.pdf
TRINITY_DN1047_c0_g1:1273	si_a768	TRINITY_DN1047_c0_g1	1261	1283	1273	-28.40	-20.50	0.721830985915493	8	1-4,1283-1280;5-18,1278-1265;19-20,1263-1262	x-x,1279-1279[BULt];x-x,1264-1264[BULt];21-21,1261-1261[UP3]	.((.((((((((((((((.((((&))))-))))))))))))))-)).	UGAUGUUGGGUCAGUCGAUAAGC&GUUU-UUGAUUGAUUCAAC-UCU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN1047_c0_g1_1273_TPlot.pdf
TRINITY_DN1047_c0_g1:1274	si_a767	TRINITY_DN1047_c0_g1	1262	1284	1274	-30.10	-20.10	0.667774086378738	8	2-5,1283-1280;6-19,1278-1265;20-21,1263-1262	1-1,1284-1284[UP5];x-x,1279-1279[BULt];x-x,1264-1264[BULt]	((.((((((((((((((.((((.&.))))-))))))))))))))-))	GAUGUUGGGUCAGUCGAUAAGCA&GGUUU-UUGAUUGAUUCAAC-UC	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN1047_c0_g1_1274_TPlot.pdf
TRINITY_DN1047_c0_g1:1760	si_s701	TRINITY_DN1047_c0_g1	1748	1770	1760	-30.50	-20.20	0.662295081967213	6	1-9,1770-1762;10-15,1760-1755;17-18,1753-1752;19-21,1750-1748	x-x,1761-1761[BULt];16-16,1754-1754[SIL];x-x,1751-1751[BULt]	(((.((.((((((.(((((((((&)))))))))-)))))).))-)))	CUGCUUGACUAAUAAGAUCGGCU&AGUCGAUUU-AUUAGUGAA-CAG	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN1047_c0_g1_1760_TPlot.pdf
TRINITY_DN1047_c0_g1:1941	si_a132	TRINITY_DN1047_c0_g1	1931	1950	1941	-26.80	-17.70	0.66044776119403	7.5	1-11,1950-1940;13-14,1939-1938;17-21,1935-1931	12-12,x-x[BULq];15-16,1937-1936[SIL]	(((((..((-(((((((((((&))))))))))).))..)))))	GGCGAAGAA-UGCUGUUGCUG&UAGCAAUAGUAAUUAAUCGUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a132_TRINITY_DN1047_c0_g1_1941_TPlot.pdf
TRINITY_DN1047_c0_g1:1950	si_a123	TRINITY_DN1047_c0_g1	1939	1959	1950	-26.60	-17.60	0.661654135338346	12	4-8,1956-1952;10-20,1950-1940	1-3,1959-1957[UP5];9-9,1951-1951[SIL];21-21,1939-1939[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	AUGCUGUUGCUGCAGGACUUA&CUUGUUUUAUAGCAAUAGUAA	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN1047_c0_g1_1950_TPlot.pdf
TRINITY_DN1047_c0_g1:2325	si_a158	TRINITY_DN1047_c0_g1	2311	2334	2325	-31.40	-20.50	0.652866242038217	8.5	1-11,2334-2324;12-18,2321-2315;19-21,2313-2311	x-x,2323-2322[BULt];x-x,2314-2314[BULt]	(((.(((((((..(((((((((((&)))))))))))--)))))))-)))	GGUAGGGUGGACAUUGACUUUGAA&UUUAAGGUCAA--UCUAUUC-ACC	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a158_TRINITY_DN1047_c0_g1_2325_TPlot.pdf
TRINITY_DN1047_c0_g1:2328	si_a155	TRINITY_DN1047_c0_g1	2315	2337	2328	-28.90	-20.30	0.70242214532872	6.5	2-14,2336-2324;15-21,2321-2315	1-1,2337-2337[UP5];x-x,2323-2322[BULt]	(((((((..(((((((((((((.&.)))))))))))))--)))))))	GGGUGGACAUUGACUUUGAAACC&UGUUUUAAGGUCAA--UCUAUUC	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a155_TRINITY_DN1047_c0_g1_2328_TPlot.pdf
TRINITY_DN1047_c0_g1:2329	si_a154	TRINITY_DN1047_c0_g1	2316	2338	2329	-27.00	-18.00	0.666666666666667	8.5	3-15,2336-2324;16-21,2321-2316	1-2,2338-2337[UP5];x-x,2323-2322[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	GGUGGACAUUGACUUUGAAACCG&UUGUUUUAAGGUCAA--UCUAUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN1047_c0_g1_2329_TPlot.pdf
TRINITY_DN1047_c0_g1:2752	si_a142	TRINITY_DN1047_c0_g1	2741	2761	2752	-23.50	-18.50	0.787234042553192	7.5	3-8,2759-2754;10-21,2752-2741	1-2,2761-2760[UP5];9-9,2753-2753[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UUGGGACAACGAGGAUUAACC&AAUUAAUCGUUGUUGUUUUAA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1047_c0_g1_2752_TPlot.pdf
TRINITY_DN1047_c0_g1:2794	si_s811	TRINITY_DN1047_c0_g1	2783	2803	2794	-26.40	-18.70	0.708333333333333	7	2-15,2802-2789;18-19,2786-2785	1-1,2803-2803[UP5];16-17,2788-2787[SIL];20-21,2784-2783[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	GGAUCUAGAAGAGGUAAUGAU&UUCGUUACCUUUUCUUAAUAA	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN1047_c0_g1_2794_TPlot.pdf
TRINITY_DN1047_c0_g1:2796	si_s809	TRINITY_DN1047_c0_g1	2785	2805	2796	-28.50	-19.90	0.698245614035088	7.5	1-2,2805-2804;4-17,2802-2789	3-3,2803-2803[SIL];18-21,2788-2785[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUCUAGAAGAGGUAAUGAUGA&UCUUCGUUACCUUUUCUUAAU	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1047_c0_g1_2796_TPlot.pdf
TRINITY_DN1047_c0_g1:2800	si_s805	TRINITY_DN1047_c0_g1	2789	2809	2800	-28.60	-22.00	0.769230769230769	7.5	3-6,2807-2804;8-21,2802-2789	1-2,2809-2808[UP5];7-7,2803-2803[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AGAAGAGGUAAUGAUGAUGUU&UUUAUCUUCGUUACCUUUUCU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1047_c0_g1_2800_TPlot.pdf
TRINITY_DN1047_c0_g1:2802	si_s803	TRINITY_DN1047_c0_g1	2791	2811	2802	-26.00	-17.70	0.680769230769231	11.5	5-8,2807-2804;10-21,2802-2791	1-4,2811-2808[UP5];9-9,2803-2803[SIL]	((((((((((((.((((....&....)))).))))))))))))	AAGAGGUAAUGAUGAUGUUAU&AUUUUAUCUUCGUUACCUUUU	3	0.999999998100946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1047_c0_g1_2802_TPlot.pdf
TRINITY_DN1047_c0_g1:2907	si_a629	TRINITY_DN1047_c0_g1	2896	2920	2907	-26.30	-17.40	0.661596958174905	14	2-6,2919-2915;7-11,2910-2906;13-21,2904-2896	1-1,2920-2920[UP5];x-x,2914-2911[BULt];12-12,2905-2905[SIL]	(((((((((.(((((....(((((.&.)))))----))))).)))))))))	CGAAGAAAUGGACAUAUUCGAUGCA&CGUAUU----AUGUCGAUUUUUUUG	3	0.999988999145849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN1047_c0_g1_2907_TPlot.pdf
TRINITY_DN10485_c0_g1:710	si_a431	TRINITY_DN10485_c0_g1	699	721	710	-34.50	-23.10	0.669565217391304	8.5	1-5,721-717;6-10,714-710;12-21,708-699	x-x,716-715[BULt];11-11,709-709[SIL]	((((((((((.(((((..(((((&)))))--))))).))))))))))	UCGUGUUCAAGGGAUCAGCUGUA&UAUAG--GAUCCGUUGGAUAUGA	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN10485_c0_g1_710_TPlot.pdf
TRINITY_DN10492_c0_g1:222	si_a283	TRINITY_DN10492_c0_g1	211	231	222	-28.30	-19.40	0.685512367491166	10	2-14,230-218	1-1,231-231[UP5];15-21,217-211[UP3]	.......(((((((((((((.&.))))))))))))).......	CUGAUAACCGAGUGAUCUUUG&AAAAGAUCGCUUGGAUUUAAA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN10492_c0_g1_222_TPlot.pdf
TRINITY_DN10492_c0_g1:349	si_a319	TRINITY_DN10492_c0_g1	338	361	349	-22.40	-14.80	0.660714285714286	10	1-8,361-354;9-17,350-342;19-21,340-338	x-x,353-351[BULt];18-18,341-341[SIL]	(((.(((((((((...((((((((&))))))))---))))))))).)))	AGUCGAAAAGUCAUUAUGGAUGAA&UUUAUCCA---UGAUUUUUUUAUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN10492_c0_g1_349_TPlot.pdf
TRINITY_DN10492_c0_g1:350	si_a318	TRINITY_DN10492_c0_g1	339	362	350	-22.50	-14.70	0.653333333333333	12	2-9,361-354;10-18,350-342	1-1,362-362[UP5];x-x,353-351[BULt];19-21,341-339[UP3]	...(((((((((...((((((((.&.))))))))---)))))))))...	GUCGAAAAGUCAUUAUGGAUGAAG&AUUUAUCCA---UGAUUUUUUUAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN10492_c0_g1_350_TPlot.pdf
TRINITY_DN10492_c0_g1:356	si_a315	TRINITY_DN10492_c0_g1	342	365	356	-27.00	-17.70	0.655555555555556	11	2-3,364-363;5-12,361-354;13-21,350-342	1-1,365-365[UP5];4-4,362-362[SIL];x-x,353-351[BULt]	(((((((((...((((((((.((.&.)).))))))))---)))))))))	GAAAAGUCAUUAUGGAUGAAGCCU&UGGAUUUAUCCA---UGAUUUUUU	3	0.999999846412027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN10492_c0_g1_356_TPlot.pdf
TRINITY_DN10495_c0_g1:1992	si_a469	TRINITY_DN10495_c0_g1	1981	2002	1992	-21.10	-16.00	0.758293838862559	6.5	1-7,2002-1996;8-19,1994-1983	x-x,1995-1995[BULt];20-21,1982-1981[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	GAAACAGUAAUUACGGUAUUGU&AUAAUAU-GUAAUUAUUGUUAU	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN10495_c0_g1_1992_TPlot.pdf
TRINITY_DN10495_c0_g1:1993	si_a468	TRINITY_DN10495_c0_g1	1982	2003	1993	-21.30	-16.00	0.751173708920188	6.5	2-8,2002-1996;9-20,1994-1983	1-1,2003-2003[UP5];x-x,1995-1995[BULt];21-21,1982-1982[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	AAACAGUAAUUACGGUAUUGUU&UAUAAUAU-GUAAUUAUUGUUA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN10495_c0_g1_1993_TPlot.pdf
TRINITY_DN10495_c0_g1:726	si_s10	TRINITY_DN10495_c0_g1	715	735	726	-23.80	-15.70	0.659663865546218	9.5	1-15,735-721	16-21,720-715[UP3]	......(((((((((((((((&)))))))))))))))......	AACUGUUAGUAGUAGUAGGUG&UACUUAUUAUUACUAUAUUGA	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN10495_c0_g1_726_TPlot.pdf
TRINITY_DN10495_c0_g1:734	si_s2	TRINITY_DN10495_c0_g1	723	743	734	-20.50	-13.40	0.653658536585366	18	9-21,735-723	1-8,743-736[UP5]	(((((((((((((........&........)))))))))))))	GUAGUAGUAGGUGGAAUUGGU&UUUUAUAUUACUUAUUAUUAC	4	0.999999435725072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN10495_c0_g1_734_TPlot.pdf
TRINITY_DN10495_c0_g1:834	si_a546	TRINITY_DN10495_c0_g1	823	843	834	-28.60	-19.10	0.667832167832168	7	1-2,843-842;4-16,840-828	3-3,841-841[SIL];17-21,827-823[UP3]	.....(((((((((((((.((&)).))))))))))))).....	ACAGUAGAAAUAGAUUGACCC&GGUUCAAUCUAUUUCUUUAUC	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN10495_c0_g1_834_TPlot.pdf
TRINITY_DN10495_c0_g1:835	si_a545	TRINITY_DN10495_c0_g1	824	844	835	-28.10	-19.20	0.683274021352313	7	2-3,843-842;5-17,840-828	1-1,844-844[UP5];4-4,841-841[SIL];18-21,827-824[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	CAGUAGAAAUAGAUUGACCCA&CGGUUCAAUCUAUUUCUUUAU	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN10495_c0_g1_835_TPlot.pdf
TRINITY_DN10495_c0_g1:842	si_a154	TRINITY_DN10495_c0_g1	831	852	842	-27.00	-19.00	0.703703703703704	11	1-5,852-848;10-21,842-831	6-9,847-843[AILt]	((((((((((((.....(((((&)))))-....))))))))))))	AAUAGAUUGACCCAGUUAGCAA&UUGUU-UUAAGGUCAAUCUAUU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN10495_c0_g1_842_TPlot.pdf
TRINITY_DN10495_c0_g1:843	si_a153	TRINITY_DN10495_c0_g1	832	853	843	-28.70	-19.40	0.67595818815331	11.5	1-6,853-848;11-21,842-832	7-10,847-843[AILt]	(((((((((((.....((((((&))))))-....)))))))))))	AUAGAUUGACCCAGUUAGCAAU&GUUGUU-UUAAGGUCAAUCUAU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN10495_c0_g1_843_TPlot.pdf
TRINITY_DN10496_c0_g1:1454	si_a60	TRINITY_DN10496_c0_g1	1443	1463	1454	-32.20	-23.80	0.739130434782609	8.5	1-15,1463-1449	16-21,1448-1443[UP3]	......(((((((((((((((&)))))))))))))))......	GGGCGAGGAGGAGCGAGUCGG&UCGACUCGCUUCUUUCAAAUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN10496_c0_g1_1454_TPlot.pdf
TRINITY_DN104_c0_g1:471	si_a408	TRINITY_DN104_c0_g1	460	480	471	-20.10	-15.20	0.756218905472637	9	2-16,479-465	1-1,480-480[UP5];17-21,464-460[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAUGGGAUAUAAACAAGGCG&UGUUUUGUUUAUAUUUAAAUA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN104_c0_g1_471_TPlot.pdf
TRINITY_DN104_c0_g1:472	si_a407	TRINITY_DN104_c0_g1	461	481	472	-19.80	-16.70	0.843434343434343	8	1-17,481-465	18-21,464-461[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAUGGGAUAUAAACAAGGCGA&UUGUUUUGUUUAUAUUUAAAU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN104_c0_g1_472_TPlot.pdf
TRINITY_DN104_c0_g1:475	si_a404	TRINITY_DN104_c0_g1	464	484	475	-21.70	-16.70	0.769585253456221	10	4-20,481-465	1-3,484-482[UP5];21-21,464-464[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGGAUAUAAACAAGGCGAGUG&GAAUUGUUUUGUUUAUAUUUA	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN104_c0_g1_475_TPlot.pdf
TRINITY_DN104_c0_g1:476	si_a403	TRINITY_DN104_c0_g1	465	485	476	-22.00	-16.30	0.740909090909091	11	5-21,481-465	1-4,485-482[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAUAUAAACAAGGCGAGUGU&AGAAUUGUUUUGUUUAUAUUU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN104_c0_g1_476_TPlot.pdf
TRINITY_DN104_c0_g1:477	si_a402	TRINITY_DN104_c0_g1	466	486	477	-22.40	-15.80	0.705357142857143	12.5	6-21,481-466	1-5,486-482[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUAUAAACAAGGCGAGUGUC&UAGAAUUGUUUUGUUUAUAUU	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN104_c0_g1_477_TPlot.pdf
TRINITY_DN104_c0_g1:798	si_a789	TRINITY_DN104_c0_g1	787	807	798	-24.80	-16.60	0.669354838709677	10	5-18,803-790	1-4,807-804[UP5];19-21,789-787[UP3]	...((((((((((((((....&....))))))))))))))...	GUAGGAAAAUAGAAAAAGAAA&UCUAUUUUUCUAUUUUCCAAU	4	0.999999999962514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN104_c0_g1_798_TPlot.pdf
TRINITY_DN10501_c0_g1:1860	si_s312	TRINITY_DN10501_c0_g1	1849	1869	1860	-29.00	-20.60	0.710344827586207	5.5	2-13,1868-1857;15-20,1855-1850	1-1,1869-1869[UP5];14-14,1856-1856[SIL];21-21,1849-1849[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	AAAUGAGCGGGGCAGAAUUUC&AAAAUUCUGUCCUUCUUGUUA	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN10501_c0_g1_1860_TPlot.pdf
TRINITY_DN10501_c0_g1:416	si_s633	TRINITY_DN10501_c0_g1	402	426	416	-37.90	-25.20	0.66490765171504	11	1-4,426-423;5-10,421-416;11-11,413-413;12-21,411-402	x-x,422-422[BULt];x-x,415-414[BULt];x-x,412-412[BULt]	((((((((((.(..((((((.((((&))))-))))))--)-))))))))))	GGGGCAAGCGACGACUACGAUGGAG&CUUU-UCGUAG--G-CGUUUGCCCU	2	0.993029117054739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN10501_c0_g1_416_TPlot.pdf
TRINITY_DN10501_c0_g2:429	si_a757	TRINITY_DN10501_c0_g2	418	439	429	-33.10	-22.80	0.688821752265861	9.5	2-4,438-436;5-17,434-422	1-1,439-439[UP5];x-x,435-435[BULt];18-21,421-418[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	CGCGGAGGACCCAAGGGCAGGC&ACCU-CCUUUGGGUUUUUGAUU	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN10501_c0_g2_429_TPlot.pdf
TRINITY_DN10501_c0_g2:485	si_s310	TRINITY_DN10501_c0_g2	474	496	485	-32.10	-21.60	0.672897196261682	10.5	1-2,496-495;4-9,493-488;11-21,484-474	3-3,494-494[SIL];10-10,487-485[AILt]	(((((((((((...((((((.((&)).))))))--.)))))))))))	GCGAGGAGGACUCUGAGUUUGCG&CGAAAAUUC--UGUCCUUCUUGU	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN10501_c0_g2_485_TPlot.pdf
TRINITY_DN10505_c0_g1:1428	si_s72	TRINITY_DN10505_c0_g1	1417	1437	1428	-24.10	-15.88	0.658921161825726	12.5	3-6,1435-1432;10-21,1428-1417	1-2,1437-1436[UP5];7-9,1431-1429[SIL]	((((((((((((...((((..&..))))...))))))))))))	AAGGAAGGAAAGUUUGUGGUG&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10505_c0_g1_1428_TPlot.pdf
TRINITY_DN10509_c0_g1:1194	si_s418	TRINITY_DN10509_c0_g1	1183	1208	1194	-26.70	-18.70	0.700374531835206	13.5	1-9,1208-1200;10-18,1194-1186	x-x,1199-1195[BULt];19-21,1185-1183[UP3]	...(((((((((.....(((((((((&)))))))))-----)))))))))...	CAGGUUAUGUAGCCACUAAUAUGUCG&CGACAUAUU-----CUAUAUAACAAU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s418_TRINITY_DN10509_c0_g1_1194_TPlot.pdf
TRINITY_DN10509_c0_g1:1200	si_s417	TRINITY_DN10509_c0_g1	1184	1209	1200	-27.40	-18.70	0.682481751824818	13.5	2-10,1208-1200;11-19,1194-1186	1-1,1209-1209[UP5];x-x,1199-1195[BULt];20-21,1185-1184[UP3]	..(((((((((.....(((((((((.&.)))))))))-----)))))))))..	AGGUUAUGUAGCCACUAAUAUGUCGA&ACGACAUAUU-----CUAUAUAACAA	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s417_TRINITY_DN10509_c0_g1_1200_TPlot.pdf
TRINITY_DN10509_c0_g1:1202	si_s415	TRINITY_DN10509_c0_g1	1186	1211	1202	-26.60	-18.30	0.68796992481203	15.5	4-12,1208-1200;13-21,1194-1186	1-3,1211-1209[UP5];x-x,1199-1195[BULt]	(((((((((.....(((((((((...&...)))))))))-----)))))))))	GUUAUGUAGCCACUAAUAUGUCGAUG&AAACGACAUAUU-----CUAUAUAAC	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN10509_c0_g1_1202_TPlot.pdf
TRINITY_DN1050_c0_g1:1560	si_s15	TRINITY_DN1050_c0_g1	1547	1569	1560	-25.60	-16.70	0.65234375	9	1-8,1569-1562;11-16,1559-1554;17-20,1551-1548	9-10,1561-1560[SIL];x-x,1553-1552[BULt];21-21,1547-1547[UP3]	.((((..((((((..((((((((&))))))))..))))))--)))).	CGCGAAAUCAGUAGUGUAAUGAU&AUUAUUACUAUAUUGA--UUGCA	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN1050_c0_g1_1560_TPlot.pdf
TRINITY_DN1050_c0_g1:1561	si_s14	TRINITY_DN1050_c0_g1	1548	1570	1561	-25.30	-16.80	0.66403162055336	8.5	1-9,1570-1562;12-17,1559-1554;18-21,1551-1548	10-11,1561-1560[SIL];x-x,1553-1552[BULt]	((((..((((((..(((((((((&)))))))))..))))))--))))	GCGAAAUCAGUAGUGUAAUGAUG&UAUUAUUACUAUAUUGA--UUGC	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN1050_c0_g1_1561_TPlot.pdf
TRINITY_DN1050_c0_g1:1562	si_s13	TRINITY_DN1050_c0_g1	1551	1571	1562	-22.90	-17.60	0.768558951965066	7.5	1-10,1571-1562;13-20,1559-1552	11-12,1561-1560[SIL];21-21,1551-1551[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAAUCAGUAGUGUAAUGAUGA&UUAUUAUUACUAUAUUGAUUG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN1050_c0_g1_1562_TPlot.pdf
TRINITY_DN1050_c0_g1:1563	si_s12	TRINITY_DN1050_c0_g1	1552	1572	1563	-22.80	-17.30	0.758771929824561	6.5	2-11,1571-1562;14-21,1559-1552	1-1,1572-1572[UP5];12-13,1561-1560[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AAUCAGUAGUGUAAUGAUGAC&CUUAUUAUUACUAUAUUGAUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN1050_c0_g1_1563_TPlot.pdf
TRINITY_DN1050_c0_g1:1564	si_s11	TRINITY_DN1050_c0_g1	1553	1573	1564	-23.60	-16.40	0.694915254237288	7.5	3-12,1571-1562;15-21,1559-1553	1-2,1573-1572[UP5];13-14,1561-1560[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AUCAGUAGUGUAAUGAUGACG&ACUUAUUAUUACUAUAUUGAU	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN1050_c0_g1_1564_TPlot.pdf
TRINITY_DN10510_c0_g1:2182	si_s794	TRINITY_DN10510_c0_g1	2171	2193	2182	-31.20	-21.06	0.675	12	1-9,2193-2185;13-21,2179-2171	10-12,2184-2180[AILt]	(((((((((.....(((((((((&)))))))))--...)))))))))	UGAAGAUGAUCUUAACGAGUUUG&CAAGCUCGU--AUUUUAUCUUCG	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN10510_c0_g1_2182_TPlot.pdf
TRINITY_DN10511_c0_g1:240	si_a485	TRINITY_DN10511_c0_g1	229	249	240	-26.60	-17.30	0.650375939849624	9	1-14,249-236;16-17,234-233	15-15,235-235[SIL];18-21,232-229[UP3]	....((.((((((((((((((&)))))))))))))).))....	UUUAGAGAUAUUUUGUGUAGC&GUUAUAUAGAAUAUGUCGUUU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN10511_c0_g1_240_TPlot.pdf
TRINITY_DN10517_c0_g1:1042	si_s84	TRINITY_DN10517_c0_g1	1031	1051	1042	-32.30	-23.00	0.712074303405573	6	2-16,1050-1036;18-20,1034-1032	1-1,1051-1051[UP5];17-17,1035-1035[SIL];21-21,1031-1031[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	GGAACAAGAGGAGAGGGAAGC&UCUUUCCUUUCUUCUUCUUCG	4	0.999999994461891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10517_c0_g1_1042_TPlot.pdf
TRINITY_DN10517_c0_g1:1047	si_s79	TRINITY_DN10517_c0_g1	1036	1056	1047	-26.20	-20.10	0.767175572519084	13	7-21,1050-1036	1-6,1056-1051[UP5]	(((((((((((((((......&......)))))))))))))))	AAGAGGAGAGGGAAGCGGCAG&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999220709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10517_c0_g1_1047_TPlot.pdf
TRINITY_DN10517_c0_g1:1049	si_s77	TRINITY_DN10517_c0_g1	1038	1058	1049	-25.50	-18.00	0.705882352941177	17	9-21,1050-1038	1-8,1058-1051[UP5]	(((((((((((((........&........)))))))))))))	GAGGAGAGGGAAGCGGCAGUU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10517_c0_g1_1049_TPlot.pdf
TRINITY_DN10517_c0_g1:1056	si_a142	TRINITY_DN10517_c0_g1	1045	1067	1056	-23.50	-16.20	0.68936170212766	11	1-9,1067-1059;10-19,1056-1047	x-x,1058-1057[BULt];20-21,1046-1045[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	GGGAAGCGGCAGUUCGAUUGGUU&AAUUAAUCG--UUGUUGUUUUAA	4	0.999999993331237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN10517_c0_g1_1056_TPlot.pdf
TRINITY_DN10517_c0_g1:1059	si_a141	TRINITY_DN10517_c0_g1	1046	1068	1059	-23.80	-16.20	0.680672268907563	11	2-10,1067-1059;11-20,1056-1047	1-1,1068-1068[UP5];x-x,1058-1057[BULt];21-21,1046-1046[UP3]	.((((((((((..(((((((((.&.)))))))))--)))))))))).	GGAAGCGGCAGUUCGAUUGGUUU&UAAUUAAUCG--UUGUUGUUUUA	4	0.999999979669509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN10517_c0_g1_1059_TPlot.pdf
TRINITY_DN10517_c0_g1:1433	si_a862	TRINITY_DN10517_c0_g1	1418	1442	1433	-22.70	-14.96	0.659030837004405	13	1-12,1442-1431;15-21,1424-1418	13-14,1430-1425[AILt]	(((((((......((((((((((((&))))))))))))----..)))))))	UAAAUCUAGCAAAGAUAGUUGGGUU&AAUCCAAUUAUU----AAAGAUUUA	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN10517_c0_g1_1433_TPlot.pdf
TRINITY_DN10517_c0_g1:653	si_a759	TRINITY_DN10517_c0_g1	644	662	653	-32.60	-21.40	0.656441717791411	5.5	1-9,662-654;11-15,652-648;18-21,647-644	10-10,653-653[SIL];16-17,x-x[BULq]	((((--(((((.(((((((((&))))))))).)))))..))))	UCAA--GAAAAGCCAGAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.999982918307304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN10517_c0_g1_653_TPlot.pdf
TRINITY_DN10519_c0_g1:1054	si_a413	TRINITY_DN10519_c0_g1	1044	1063	1054	-18.40	-12.70	0.690217391304348	5	1-14,1063-1050;16-21,1049-1044	15-15,x-x[BULq]	((((((-((((((((((((((&)))))))))))))).))))))	AUAUUU-UUUGAAUGUGAAUA&UGUUUAUAUUUAAAUAAAUAU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN10519_c0_g1_1054_TPlot.pdf
TRINITY_DN10519_c1_g1:1170	si_a351	TRINITY_DN10519_c1_g1	1159	1179	1170	-20.50	-14.00	0.682926829268293	8.5	4-13,1176-1167;15-21,1165-1159	1-3,1179-1177[UP5];14-14,1166-1166[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	AUCAAGACAGGAUUAGUACCA&AAAUAUUAAUUCUAUUUUGAU	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN10519_c1_g1_1170_TPlot.pdf
TRINITY_DN10519_c1_g1:809	si_a73	TRINITY_DN10519_c1_g1	798	818	809	-21.90	-14.70	0.671232876712329	12	4-18,815-801	1-3,818-816[UP5];19-21,800-798[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUGGAUGGAGAGCGAUUUAUU&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999970739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN10519_c1_g1_809_TPlot.pdf
TRINITY_DN10519_c3_g1:359	si_a488	TRINITY_DN10519_c3_g1	348	368	359	-26.40	-17.50	0.662878787878788	6.5	2-8,367-361;10-20,359-349	1-1,368-368[UP5];9-9,360-360[SIL];21-21,348-348[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UAAAAAUGACAUUUUCUGUGC&AUAUAGAAUAUGUCGUUUUUC	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN10519_c3_g1_359_TPlot.pdf
TRINITY_DN10519_c3_g1:80	si_s380	TRINITY_DN10519_c3_g1	64	90	80	-40.00	-26.00	0.65	14	1-7,90-84;8-10,82-80;11-14,75-72;15-21,70-64	x-x,83-83[BULt];x-x,79-76[BULt];x-x,71-71[BULt]	(((((((.((((....(((.(((((((&)))))))-)))----))))-)))))))	GGUGUAAUGGCGAUUAGGCUGCGCGAG&CUCGCGU-GUC----CGCC-UUACAUU	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN10519_c3_g1_80_TPlot.pdf
TRINITY_DN1051_c0_g1:1289	si_s811	TRINITY_DN1051_c0_g1	1276	1298	1289	-26.40	-17.40	0.659090909090909	11.5	2-12,1297-1287;13-17,1284-1280	1-1,1298-1298[UP5];x-x,1286-1285[BULt];18-21,1279-1276[UP3]	....(((((..(((((((((((.&.)))))))))))--)))))....	UCGAUAAGGUUGAAGGUAGCGAC&UUCGUUACCUUU--UCUUAAUAA	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN1051_c0_g1_1289_TPlot.pdf
TRINITY_DN1051_c0_g1:1323	si_a374	TRINITY_DN1051_c0_g1	1312	1330	1323	-25.60	-17.76	0.69375	10	1-4,1330-1327;10-21,1323-1312	5-9,1326-1324[AILq]	((((((((((((...--((((&)))).....))))))))))))	AAUUCGAAAUCACUG--GAUC&GAUCAAAAAUGAUUUCGAAUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN1051_c0_g1_1323_TPlot.pdf
TRINITY_DN1051_c0_g1:1439	si_a135	TRINITY_DN1051_c0_g1	1428	1446	1439	-25.70	-16.78	0.652918287937743	10.5	1-7,1446-1440;12-20,1437-1429	8-11,1439-1438[AILq];21-21,1428-1428[UP3]	.(((((((((..--(((((((&)))))))....))))))))).	UGCAACGAUUCC--GCUAUUG&CAAUAGUAAUUAAUCGUUGUU	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN1051_c0_g1_1439_TPlot.pdf
TRINITY_DN1051_c0_g1:5297	si_a542	TRINITY_DN1051_c0_g1	5286	5306	5297	-30.70	-20.10	0.654723127035831	10.5	1-14,5306-5293	15-21,5292-5286[UP3]	.......((((((((((((((&)))))))))))))).......	UUUACACGGAUUGAGCUGGUC&GAUCGGUUCAAUCUAUUUCUU	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN1051_c0_g1_5297_TPlot.pdf
TRINITY_DN1051_c0_g1:728	si_s674	TRINITY_DN1051_c0_g1	718	737	728	-27.60	-19.50	0.706521739130435	4	2-16,736-722;18-19,721-720;21-21,718-718	1-1,737-737[UP5];17-17,x-x[BULq];20-20,719-719[SIL]	(.((-(((((((((((((((.&.))))))))))))))).)).)	AGUC-UGUUUCUGUAAUCAAA&AUUGAUUAUAGAAACAUGAGU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s674_TRINITY_DN1051_c0_g1_728_TPlot.pdf
TRINITY_DN1051_c0_g1:729	si_s673	TRINITY_DN1051_c0_g1	719	738	729	-26.80	-18.90	0.705223880597015	6	3-17,736-722;19-20,721-720	1-2,738-737[UP5];18-18,x-x[BULq];21-21,719-719[UP3]	.((-(((((((((((((((..&..))))))))))))))).)).	GUC-UGUUUCUGUAAUCAAAC&AAUUGAUUAUAGAAACAUGAG	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s673_TRINITY_DN1051_c0_g1_729_TPlot.pdf
TRINITY_DN10523_c1_g1:337	si_s9	TRINITY_DN10523_c1_g1	326	346	337	-22.90	-15.20	0.663755458515284	11.5	3-17,344-330	1-2,346-345[UP5];18-21,329-326[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAACAUGGUGAUGAUGGGUCU&UUACUUAUUAUUACUAUAUUG	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN10523_c1_g1_337_TPlot.pdf
TRINITY_DN10523_c1_g1:341	si_s5	TRINITY_DN10523_c1_g1	330	350	341	-21.70	-15.00	0.691244239631336	14.5	7-21,344-330	1-6,350-345[UP5]	(((((((((((((((......&......)))))))))))))))	AUGGUGAUGAUGGGUCUAUUU&UAUAUUACUUAUUAUUACUAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN10523_c1_g1_341_TPlot.pdf
TRINITY_DN10523_c1_g1:604	si_a721	TRINITY_DN10523_c1_g1	593	613	604	-35.10	-23.10	0.658119658119658	8	3-9,611-605;11-18,603-596	1-2,613-612[UP5];10-10,604-604[SIL];19-21,595-593[UP3]	...((((((((.(((((((..&..))))))).))))))))...	CCAAUGCCCGAAUAACGAUGC&UAAUCGUUACUCGGGCAUCUU	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN10523_c1_g1_604_TPlot.pdf
TRINITY_DN10523_c1_g1:605	si_a720	TRINITY_DN10523_c1_g1	594	614	605	-35.30	-23.10	0.654390934844193	9	4-10,611-605;12-19,603-596	1-3,614-612[UP5];11-11,604-604[SIL];20-21,595-594[UP3]	..((((((((.(((((((...&...))))))).))))))))..	CAAUGCCCGAAUAACGAUGCU&AUAAUCGUUACUCGGGCAUCU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN10523_c1_g1_605_TPlot.pdf
TRINITY_DN10523_c1_g1:607	si_a718	TRINITY_DN10523_c1_g1	596	616	607	-32.60	-23.10	0.708588957055215	10	6-12,611-605;14-21,603-596	1-5,616-612[UP5];13-13,604-604[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AUGCCCGAAUAACGAUGCUGU&AAAUAAUCGUUACUCGGGCAU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN10523_c1_g1_607_TPlot.pdf
TRINITY_DN10526_c0_g1:250	si_a898	TRINITY_DN10526_c0_g1	239	259	250	-20.50	-14.60	0.712195121951219	6	1-4,259-256;6-16,254-244;19-21,241-239	5-5,255-255[SIL];17-18,243-242[SIL]	(((..(((((((((((.((((&)))).)))))))))))..)))	UUUGUUAUUGCUUAUUUUUGC&GUAAUAAUAAGUAAUAUAAAA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN10526_c0_g1_250_TPlot.pdf
TRINITY_DN10526_c0_g1:251	si_a897	TRINITY_DN10526_c0_g1	239	260	251	-21.20	-13.90	0.655660377358491	6	2-5,259-256;7-17,254-244;18-21,242-239	1-1,260-260[UP5];6-6,255-255[SIL];x-x,243-243[BULt]	((((.(((((((((((.((((.&.)))).)))))))))))-))))	UUUGUUAUUGCUUAUUUUUGCA&AGUAAUAAUAAGUAAUA-UAAA	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN10526_c0_g1_251_TPlot.pdf
TRINITY_DN10526_c0_g2:278	si_a318	TRINITY_DN10526_c0_g2	267	287	278	-22.50	-18.20	0.808888888888889	7	3-9,285-279;11-21,277-267	1-2,287-286[UP5];10-10,278-278[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AUGAAGAAAUCUUGGAUGACA&AUUUAUCCAUGAUUUUUUUAU	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN10526_c0_g2_278_TPlot.pdf
TRINITY_DN10526_c0_g2:79	si_s77	TRINITY_DN10526_c0_g2	68	88	79	-25.50	-18.40	0.72156862745098	5.5	3-12,86-77;14-21,75-68	1-2,88-87[UP5];13-13,76-76[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GAAGAGAGUAGAGAAAAAACA&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999996017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10526_c0_g2_79_TPlot.pdf
TRINITY_DN10527_c0_g1:1814	si_s68	TRINITY_DN10527_c0_g1	1801	1823	1814	-23.10	-19.70	0.852813852813853	6.5	1-10,1823-1814;11-21,1811-1801	x-x,1813-1812[BULt]	(((((((((((..((((((((((&))))))))))--)))))))))))	AAAGAAGGGAAUCGUAGAAGUUG&CAACUUCUAU--UUUUUUUCUUU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10527_c0_g1_1814_TPlot.pdf
TRINITY_DN10527_c0_g1:1815	si_s67	TRINITY_DN10527_c0_g1	1802	1824	1815	-25.60	-19.10	0.74609375	7.5	2-11,1823-1814;12-21,1811-1802	1-1,1824-1824[UP5];x-x,1813-1812[BULt]	((((((((((..((((((((((.&.))))))))))--))))))))))	AAGAAGGGAAUCGUAGAAGUUGA&GCAACUUCUAU--UUUUUUUCUU	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN10527_c0_g1_1815_TPlot.pdf
TRINITY_DN10527_c0_g1:1816	si_s66	TRINITY_DN10527_c0_g1	1803	1825	1816	-26.30	-18.20	0.692015209125475	9.5	3-12,1823-1814;13-21,1811-1803	1-2,1825-1824[UP5];x-x,1813-1812[BULt]	(((((((((..((((((((((..&..))))))))))--)))))))))	AGAAGGGAAUCGUAGAAGUUGAA&AGCAACUUCUAU--UUUUUUUCU	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN10527_c0_g1_1816_TPlot.pdf
TRINITY_DN1052_c0_g1:445	si_s416	TRINITY_DN1052_c0_g1	434	454	445	-27.30	-20.60	0.754578754578755	7	2-18,453-437	1-1,454-454[UP5];19-21,436-434[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUAUAUGUGGAGUAUGUUGUA&AACGACAUAUUCUAUAUAACA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s416_TRINITY_DN1052_c0_g1_445_TPlot.pdf
TRINITY_DN10537_c0_g1:253	si_a493	TRINITY_DN10537_c0_g1	241	262	253	-29.50	-20.20	0.684745762711864	12	6-14,257-249;15-21,247-241	1-5,262-258[UP5];x-x,248-248[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	GAGACGACGAGACGACACCAAG&GAAUAUGUCGUUUU-UCGUCUU	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN10537_c0_g1_253_TPlot.pdf
TRINITY_DN10539_c0_g1:226	si_a410	TRINITY_DN10539_c0_g1	214	235	226	-17.80	-12.80	0.719101123595506	8	4-15,232-221;16-21,219-214	1-3,235-233[UP5];x-x,220-220[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	UUUGUUAUGAAUAUGAACAUUU&UUUUGUUUAUAUUUA-AAUAAA	2	0.998748712081398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN10539_c0_g1_226_TPlot.pdf
TRINITY_DN1053_c0_g2:808	si_a761	TRINITY_DN1053_c0_g2	797	817	808	-30.10	-19.70	0.654485049833887	9.5	1-9,817-809;11-18,807-800	10-10,808-808[SIL];19-21,799-797[UP3]	...((((((((.(((((((((&))))))))).))))))))...	AGGCAGUCAAAUAUCUAGGGG&CCUUUGGGUUUUUGAUUGAUU	4	0.999999999982171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN1053_c0_g2_808_TPlot.pdf
TRINITY_DN1053_c0_g2:809	si_a760	TRINITY_DN1053_c0_g2	798	818	809	-31.10	-21.30	0.684887459807074	8.5	1-10,818-809;12-19,807-800	11-11,808-808[SIL];20-21,799-798[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GGCAGUCAAAUAUCUAGGGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1053_c0_g2_809_TPlot.pdf
TRINITY_DN1053_c1_g1:1343	si_a323	TRINITY_DN1053_c1_g1	1332	1352	1343	-26.80	-17.50	0.652985074626866	6.5	1-3,1352-1350;5-13,1348-1340;16-19,1337-1334	4-4,1349-1349[SIL];14-15,1339-1338[SIL];20-21,1333-1332[UP3]	..((((..(((((((((.(((&))).)))))))))..))))..	ACGGAAGUGAAAAAUCAAGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.999999999267504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1053_c1_g1_1343_TPlot.pdf
TRINITY_DN1053_c1_g1:1345	si_a321	TRINITY_DN1053_c1_g1	1334	1354	1345	-26.70	-18.20	0.681647940074906	5.5	2-5,1353-1350;7-15,1348-1340;18-21,1337-1334	1-1,1354-1354[UP5];6-6,1349-1349[SIL];16-17,1339-1338[SIL]	((((..(((((((((.((((.&.)))).)))))))))..))))	GGAAGUGAAAAAUCAAGGAUC&UAUCCAUGAUUUUUUUAUUCC	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1053_c1_g1_1345_TPlot.pdf
TRINITY_DN1053_c1_g1:1574	si_a497	TRINITY_DN1053_c1_g1	1563	1583	1574	-32.00	-20.80	0.65	6	1-3,1583-1581;5-18,1579-1566	4-4,1580-1580[SIL];19-21,1565-1563[UP3]	...((((((((((((((.(((&))).))))))))))))))...	GCAGAAGACGAAAAAUGCCAU&AUGUCGUUUUUCGUCUUCCUU	2	0.999999999999945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1053_c1_g1_1574_TPlot.pdf
TRINITY_DN1053_c1_g1:1577	si_a494	TRINITY_DN1053_c1_g1	1566	1586	1577	-29.50	-20.80	0.705084745762712	8	4-6,1583-1581;8-21,1579-1566	1-3,1586-1584[UP5];7-7,1580-1580[SIL]	((((((((((((((.(((...&...))).))))))))))))))	GAAGACGAAAAAUGCCAUUUC&AAUAUGUCGUUUUUCGUCUUC	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1053_c1_g1_1577_TPlot.pdf
TRINITY_DN1053_c1_g1:3372	si_a704	TRINITY_DN1053_c1_g1	3361	3380	3372	-29.30	-19.70	0.672354948805461	6	2-5,3379-3376;7-19,3375-3363	1-1,3380-3380[UP5];6-6,x-x[BULq];20-21,3362-3361[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	GAUAUUUUGGAAUGU-UCAGA&ACUGGUACAUUCCAAAAUAAU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN1053_c1_g1_3372_TPlot.pdf
TRINITY_DN1053_c1_g1:3373	si_a703	TRINITY_DN1053_c1_g1	3362	3381	3373	-29.20	-19.70	0.674657534246575	7	3-6,3379-3376;8-20,3375-3363	1-2,3381-3380[UP5];7-7,x-x[BULq];21-21,3362-3362[UP3]	.(((((((((((((-((((..&..)))).))))))))))))).	AUAUUUUGGAAUGU-UCAGAA&AACUGGUACAUUCCAAAAUAA	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN1053_c1_g1_3373_TPlot.pdf
TRINITY_DN10542_c2_g1:12	si_a404	TRINITY_DN10542_c2_g1	1	21	12	-21.70	-16.10	0.741935483870968	5	2-20,20-2	1-1,21-21[UP5];21-21,1-1[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AAGAUAUAGAUAAAAUAAUUG&GAAUUGUUUUGUUUAUAUUUA	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN10542_c2_g1_12_TPlot.pdf
TRINITY_DN10544_c0_g1:1339	si_s61	TRINITY_DN10544_c0_g1	1328	1352	1339	-26.50	-17.58	0.663396226415094	14.5	2-8,1351-1345;10-19,1339-1330	1-1,1352-1352[UP5];9-9,1344-1340[AILt];20-21,1329-1328[UP3]	..((((((((((.....(((((((.&.)))))))----.))))))))))..	ACAGAUAGAAGUAUGUAGCUGACUA&AAGUUAGC----AACUUCUAUUUUU	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN10544_c0_g1_1339_TPlot.pdf
TRINITY_DN10544_c0_g1:375	si_a256	TRINITY_DN10544_c0_g1	362	383	375	-37.20	-27.00	0.725806451612903	7	1-4,383-380;6-10,379-375;11-20,372-363	5-5,x-x[BULq];x-x,374-373[BULt];21-21,362-362[UP3]	.((((((((((..(((((-((((&)))).)))))--)))))))))).	AGUUUGCCCUCAAGAUAC-AUCG&CGAUUGUAUC--GAGGGCAAACG	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a256_TRINITY_DN10544_c0_g1_375_TPlot.pdf
TRINITY_DN10544_c0_g1:376	si_a255	TRINITY_DN10544_c0_g1	363	384	376	-38.10	-26.90	0.706036745406824	7	2-5,383-380;7-11,379-375;12-21,372-363	1-1,384-384[UP5];6-6,x-x[BULq];x-x,374-373[BULt]	((((((((((..(((((-((((.&.)))).)))))--))))))))))	GUUUGCCCUCAAGAUAC-AUCGU&CCGAUUGUAUC--GAGGGCAAAC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a255_TRINITY_DN10544_c0_g1_376_TPlot.pdf
TRINITY_DN1054_c0_g1:102	si_s76	TRINITY_DN1054_c0_g1	91	111	102	-23.60	-16.30	0.690677966101695	11	3-10,109-102;12-19,100-93	1-2,111-110[UP5];11-11,101-101[SIL];20-21,92-91[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	UCGAGGGGAGUGAAGAGAACC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1054_c0_g1_102_TPlot.pdf
TRINITY_DN10551_c0_g1:1599	si_s74	TRINITY_DN10551_c0_g1	1588	1613	1599	-25.00	-16.80	0.672	14	1-8,1613-1606;9-17,1600-1592;20-21,1589-1588	x-x,1605-1601[BULt];18-19,1591-1590[SIL]	((..(((((((((.....((((((((&))))))))-----)))))))))..))	GAUUGGAAAGAGAUUUUUAAAAGUAG&CUAUUUUU-----UUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN10551_c0_g1_1599_TPlot.pdf
TRINITY_DN10555_c0_g1:287	si_s255	TRINITY_DN10555_c0_g1	276	296	287	-29.40	-21.20	0.72108843537415	8.5	1-10,296-287;12-17,285-280	11-11,286-286[SIL];18-21,279-276[UP3]	....((((((.((((((((((&)))))))))).))))))....	AGGAGGGUAGAAUAUCGGGGA&UUCCCGAUAUAUUACUCAAAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN10555_c0_g1_287_TPlot.pdf
TRINITY_DN10558_c2_g1:212	si_a818	TRINITY_DN10558_c2_g1	201	222	212	-28.90	-19.20	0.664359861591695	5	1-6,222-217;7-17,215-205;19-20,203-202	x-x,216-216[BULt];18-18,204-204[SIL];21-21,201-201[UP3]	.((.(((((((((((.((((((&))))))-))))))))))).)).	CUUGUUUCCUUUUUUCCUUCUU&AAGAAG-AAGAAAGGAAAGAAA	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN10558_c2_g1_212_TPlot.pdf
TRINITY_DN1055_c0_g1:1859	si_s63	TRINITY_DN1055_c0_g1	1847	1873	1859	-25.80	-17.10	0.662790697674419	14	1-6,1873-1868;7-11,1862-1858;12-21,1856-1847	x-x,1867-1863[BULt];x-x,1857-1857[BULt]	((((((((((.(((((.....((((((&))))))-----)))))-))))))))))	AAAAGAAUGGCAAGUUUAAACGCUAGC&GUUAGC-----AACUU-CUAUUUUUUU	3	0.999999783320533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN1055_c0_g1_1859_TPlot.pdf
TRINITY_DN1055_c0_g1:2012	si_s809	TRINITY_DN1055_c0_g1	2001	2022	2012	-28.50	-19.20	0.673684210526316	9	2-9,2021-2014;10-18,2012-2004	1-1,2022-2022[UP5];x-x,2013-2013[BULt];19-21,2003-2001[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AAGAGGAAGAGGUUGAUGAAGC&UCUUCGUUA-CCUUUUCUUAAU	4	0.999999940526879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1055_c0_g1_2012_TPlot.pdf
TRINITY_DN1055_c0_g1:2014	si_s808	TRINITY_DN1055_c0_g1	2002	2023	2014	-28.60	-19.20	0.671328671328671	10	3-10,2021-2014;11-19,2012-2004	1-2,2023-2022[UP5];x-x,2013-2013[BULt];20-21,2003-2002[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	AGAGGAAGAGGUUGAUGAAGCG&AUCUUCGUUA-CCUUUUCUUAA	4	0.999999998067349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1055_c0_g1_2014_TPlot.pdf
TRINITY_DN1055_c0_g1:3869	si_s63	TRINITY_DN1055_c0_g1	3857	3883	3869	-25.80	-17.10	0.662790697674419	14	1-6,3883-3878;7-11,3872-3868;12-21,3866-3857	x-x,3877-3873[BULt];x-x,3867-3867[BULt]	((((((((((.(((((.....((((((&))))))-----)))))-))))))))))	AAAAGAAUGGCAAGUUUAAACGCUAGC&GUUAGC-----AACUU-CUAUUUUUUU	3	0.999999610255606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN1055_c0_g1_3869_TPlot.pdf
TRINITY_DN1055_c0_g1:4024	si_s808	TRINITY_DN1055_c0_g1	4012	4033	4024	-28.60	-19.20	0.671328671328671	10	3-10,4031-4024;11-19,4022-4014	1-2,4033-4032[UP5];x-x,4023-4023[BULt];20-21,4013-4012[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	AGAGGAAGAGGUUGAUGAAGCG&AUCUUCGUUA-CCUUUUCUUAA	3	0.999999998417255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1055_c0_g1_4024_TPlot.pdf
TRINITY_DN10567_c0_g1:378	si_s481	TRINITY_DN10567_c0_g1	367	387	378	-23.00	-15.40	0.669565217391304	9	1-8,387-380;10-16,378-372	9-9,379-379[SIL];17-21,371-367[UP3]	.....(((((((.((((((((&)))))))).))))))).....	GUAAAGAGUAAAAAUAGGGUC&GAUCCUAUAUUUAUUUAAAUA	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN10567_c0_g1_378_TPlot.pdf
TRINITY_DN1056_c0_g1:848	si_a300	TRINITY_DN1056_c0_g1	836	857	848	-28.20	-18.90	0.670212765957447	15.5	8-17,850-841;18-21,839-836	1-7,857-851[UP5];x-x,840-840[BULt]	((((.((((((((((.......&.......))))))))))-))))	GAUCACAAGCGAGUCCCGGGAG&UAAAAAAGAUUCGCUUG-GAUU	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN1056_c0_g1_848_TPlot.pdf
TRINITY_DN10577_c1_g1:100	si_a788	TRINITY_DN10577_c1_g1	88	109	100	-24.80	-16.30	0.657258064516129	8	1-10,109-100;11-18,98-91	x-x,99-99[BULt];19-21,90-88[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UCCGAAAAUGGAAAAAGUGGAA&UUCUAUUUUU-CUAUUUUCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN10577_c1_g1_100_TPlot.pdf
TRINITY_DN10577_c1_g1:101	si_a787	TRINITY_DN10577_c1_g1	89	110	101	-26.30	-19.50	0.741444866920152	6.5	1-11,110-100;12-19,98-91	x-x,99-99[BULt];20-21,90-89[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	CCGAAAAUGGAAAAAGUGGAAG&CUUCUAUUUUU-CUAUUUUCCA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN10577_c1_g1_101_TPlot.pdf
TRINITY_DN10577_c1_g1:103	si_a785	TRINITY_DN10577_c1_g1	91	112	103	-25.90	-23.10	0.891891891891892	4.5	1-13,112-100;14-21,98-91	x-x,99-99[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GAAAAUGGAAAAAGUGGAAGGG&CUCUUCUAUUUUU-CUAUUUUC	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN10577_c1_g1_103_TPlot.pdf
TRINITY_DN10577_c1_g1:104	si_a784	TRINITY_DN10577_c1_g1	92	113	104	-24.70	-20.00	0.809716599190283	5.5	2-14,112-100;15-21,98-92	1-1,113-113[UP5];x-x,99-99[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AAAAUGGAAAAAGUGGAAGGGG&ACUCUUCUAUUUUU-CUAUUUU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10577_c1_g1_104_TPlot.pdf
TRINITY_DN10577_c1_g1:106	si_a782	TRINITY_DN10577_c1_g1	94	115	106	-26.40	-18.20	0.689393939393939	9.5	4-16,112-100;17-21,98-94	1-3,115-113[UP5];x-x,99-99[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	AAUGGAAAAAGUGGAAGGGGAG&CAACUCUUCUAUUUUU-CUAUU	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN10577_c1_g1_106_TPlot.pdf
TRINITY_DN10579_c0_g2:2381	si_s188	TRINITY_DN10579_c0_g2	2370	2389	2381	-28.20	-18.70	0.663120567375887	7.5	1-3,2389-2387;6-21,2385-2370	4-5,2386-2386[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	GUUUCGAAAUAGUCGUG-UUC&GAGUAACGAUUAUUUUGGAAU	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN10579_c0_g2_2381_TPlot.pdf
TRINITY_DN1057_c0_g1:38	si_s894	TRINITY_DN1057_c0_g1	27	47	38	-29.10	-19.20	0.65979381443299	7.5	2-9,46-39;11-20,37-28	1-1,47-47[UP5];10-10,38-38[SIL];21-21,27-27[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	CAGUUGAAGAGCAAGUUUGUA&AAUAGGCUUUCUCUUCAAUUU	4	0.99999999842781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN1057_c0_g1_38_TPlot.pdf
TRINITY_DN1057_c0_g1:5372	si_a25	TRINITY_DN1057_c0_g1	5361	5381	5372	-26.50	-17.50	0.660377358490566	11	5-16,5377-5366;18-21,5364-5361	1-4,5381-5378[UP5];17-17,5365-5365[SIL]	((((.((((((((((((....&....)))))))))))).))))	GGUUCUGGAACUGGAAAAAGA&UUUAUUUUUAGUUCUAAGACC	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN1057_c0_g1_5372_TPlot.pdf
TRINITY_DN1057_c12_g1:879	si_a639	TRINITY_DN1057_c12_g1	868	888	879	-23.60	-15.40	0.652542372881356	6.5	2-7,887-882;9-19,880-870	1-1,888-888[UP5];8-8,881-881[SIL];20-21,869-868[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	CAAUAUUAUUCAAUAAGAUCC&CGAUUUUUUUGAGUAAUAUAU	3	0.999999999204775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN1057_c12_g1_879_TPlot.pdf
TRINITY_DN1057_c8_g1:1194	si_s71	TRINITY_DN1057_c8_g1	1183	1204	1194	-25.70	-18.10	0.704280155642023	8	1-5,1204-1200;7-19,1197-1185	6-6,1199-1198[AILt];20-21,1184-1183[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	UAGAAAGAAGAAGAAGAAGAAG&CUUCU-AUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1057_c8_g1_1194_TPlot.pdf
TRINITY_DN1057_c8_g1:742	si_a70	TRINITY_DN1057_c8_g1	729	751	742	-23.90	-18.70	0.782426778242678	8.5	1-10,751-742;11-19,739-731	x-x,741-740[BULt];20-21,730-729[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	CCUGAAAGACAUUGUUUGGAAGA&UCUUUCAAAU--UGUUUUUCAUU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1057_c8_g1_742_TPlot.pdf
TRINITY_DN1057_c8_g1:973	si_a784	TRINITY_DN1057_c8_g1	962	982	973	-24.70	-16.30	0.659919028340081	9.5	2-4,981-979;6-18,977-965	1-1,982-982[UP5];5-5,978-978[SIL];19-21,964-962[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	GACAUAGGAAGAUGGGUGAGA&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1057_c8_g1_973_TPlot.pdf
TRINITY_DN10580_c1_g3:24	si_s97	TRINITY_DN10580_c1_g3	11	33	24	-36.30	-24.20	0.666666666666667	9.5	1-3,33-31;5-16,29-18;17-19,15-13	4-4,30-30[SIL];x-x,17-16[BULt];20-21,12-11[UP3]	..(((..((((((((((((.(((&))).))))))))))))--)))..	UGCCAACGUCCGAGGCGGACAGG&CUUCUUCGCUUCGGAU--UGGAA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN10580_c1_g3_24_TPlot.pdf
TRINITY_DN10580_c1_g3:42	si_s92	TRINITY_DN10580_c1_g3	18	51	42	-34.90	-26.20	0.750716332378224	28	1-10,51-42;11-21,28-18	x-x,41-29[BULt]	(((((((((((.............((((((((((&))))))))))-------------)))))))))))	GUCCGAGGCGGACAGGGCACCUAAAGAAGAAGAA&UUCUUCUUCU-------------UCGCUUCGGAU	0	0.0806146235733606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN10580_c1_g3_42_TPlot.pdf
TRINITY_DN10580_c1_g3:43	si_s91	TRINITY_DN10580_c1_g3	19	52	43	-34.70	-25.00	0.720461095100865	28.5	2-11,51-42;12-21,28-19	1-1,52-52[UP5];x-x,41-29[BULt]	((((((((((.............((((((((((.&.))))))))))-------------))))))))))	UCCGAGGCGGACAGGGCACCUAAAGAAGAAGAAG&UUUCUUCUUCU-------------UCGCUUCGGA	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN10580_c1_g3_43_TPlot.pdf
TRINITY_DN10585_c0_g1:436	si_s77	TRINITY_DN10585_c0_g1	424	445	436	-25.50	-21.40	0.83921568627451	6.5	1-13,445-433;14-21,431-424	x-x,432-432[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GGAGGAGGAGGAAGAAGAGGAA&UUUUUUUUCUUUC-CUUUCUUC	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN10585_c0_g1_436_TPlot.pdf
TRINITY_DN10586_c0_g1:231	si_a205	TRINITY_DN10586_c0_g1	220	240	231	-24.70	-16.10	0.651821862348178	13	6-19,235-222	1-5,240-236[UP5];20-21,221-220[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAGAUUGGUCGGUUUAGCCCU&ACUAAUAAAUCGACUAAUUAA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN10586_c0_g1_231_TPlot.pdf
TRINITY_DN10586_c0_g1:301	si_a409	TRINITY_DN10586_c0_g1	290	310	301	-19.50	-13.10	0.671794871794872	7	1-7,310-304;9-18,302-293	8-8,303-303[SIL];19-21,292-290[UP3]	...((((((((((.(((((((&))))))).))))))))))...	AAUUUUAAAUGUAUAUAAAAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999972391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10586_c0_g1_301_TPlot.pdf
TRINITY_DN10586_c0_g1:302	si_a408	TRINITY_DN10586_c0_g1	291	311	302	-20.10	-14.10	0.701492537313433	6	1-8,311-304;10-19,302-293	9-9,303-303[SIL];20-21,292-291[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AUUUUAAAUGUAUAUAAAACA&UGUUUUGUUUAUAUUUAAAUA	3	0.99999818466634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN10586_c0_g1_302_TPlot.pdf
TRINITY_DN10586_c0_g1:304	si_a406	TRINITY_DN10586_c0_g1	293	313	304	-19.80	-14.90	0.752525252525252	4.5	2-10,312-304;12-21,302-293	1-1,313-313[UP5];11-11,303-303[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	UUUAAAUGUAUAUAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN10586_c0_g1_304_TPlot.pdf
TRINITY_DN10586_c0_g1:305	si_a405	TRINITY_DN10586_c0_g1	294	314	305	-19.80	-14.00	0.707070707070707	6.5	3-11,312-304;13-21,302-294	1-2,314-313[UP5];12-12,303-303[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	UUAAAUGUAUAUAAAACAAAU&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999950339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN10586_c0_g1_305_TPlot.pdf
TRINITY_DN10586_c0_g1:676	si_a486	TRINITY_DN10586_c0_g1	665	685	676	-24.90	-16.50	0.662650602409639	7.5	1-14,685-672;17-19,669-667	15-16,671-670[SIL];20-21,666-665[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUAUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN10586_c0_g1_676_TPlot.pdf
TRINITY_DN10587_c0_g1:3083	si_a480	TRINITY_DN10587_c0_g1	3072	3092	3083	-23.70	-15.50	0.654008438818565	10.5	4-6,3089-3087;8-20,3085-3073	1-3,3092-3090[UP5];7-7,3086-3086[SIL];21-21,3072-3072[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	CCAUGUUCUGUAUGUCAAGCG&UUAUUGUUAUAUAGAAUAUGU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN10587_c0_g1_3083_TPlot.pdf
TRINITY_DN10589_c0_g1:769	si_a409	TRINITY_DN10589_c0_g1	758	778	769	-19.50	-14.60	0.748717948717949	10	1-15,778-764	16-21,763-758[UP3]	......(((((((((((((((&)))))))))))))))......	GAAGAAAGGUAUAAGCAAGGC&GUUUUGUUUAUAUUUAAAUAA	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10589_c0_g1_769_TPlot.pdf
TRINITY_DN10589_c0_g1:770	si_a408	TRINITY_DN10589_c0_g1	759	779	770	-20.10	-15.60	0.776119402985075	9	1-16,779-764	17-21,763-759[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAGAAAGGUAUAAGCAAGGCA&UGUUUUGUUUAUAUUUAAAUA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN10589_c0_g1_770_TPlot.pdf
TRINITY_DN10589_c0_g1:771	si_a407	TRINITY_DN10589_c0_g1	760	780	771	-19.80	-16.50	0.833333333333333	8	1-17,780-764	18-21,763-760[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGAAAGGUAUAAGCAAGGCAA&UUGUUUUGUUUAUAUUUAAAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN10589_c0_g1_771_TPlot.pdf
TRINITY_DN10589_c0_g1:772	si_a406	TRINITY_DN10589_c0_g1	761	781	772	-19.80	-16.50	0.833333333333333	8	2-18,780-764	1-1,781-781[UP5];19-21,763-761[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAAAGGUAUAAGCAAGGCAAG&AUUGUUUUGUUUAUAUUUAAA	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN10589_c0_g1_772_TPlot.pdf
TRINITY_DN10589_c0_g1:773	si_a405	TRINITY_DN10589_c0_g1	762	782	773	-19.80	-16.50	0.833333333333333	9	3-19,780-764	1-2,782-781[UP5];20-21,763-762[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAGGUAUAAGCAAGGCAAGA&AAUUGUUUUGUUUAUAUUUAA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN10589_c0_g1_773_TPlot.pdf
TRINITY_DN10589_c0_g1:774	si_a404	TRINITY_DN10589_c0_g1	763	783	774	-21.70	-16.50	0.76036866359447	10	4-20,780-764	1-3,783-781[UP5];21-21,763-763[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAGGUAUAAGCAAGGCAAGAA&GAAUUGUUUUGUUUAUAUUUA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN10589_c0_g1_774_TPlot.pdf
TRINITY_DN10589_c0_g1:776	si_a402	TRINITY_DN10589_c0_g1	765	785	776	-22.40	-15.40	0.6875	12.5	6-21,780-765	1-5,785-781[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGUAUAAGCAAGGCAAGAACA&UAGAAUUGUUUUGUUUAUAUU	3	0.999999438910391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN10589_c0_g1_776_TPlot.pdf
TRINITY_DN10589_c0_g1:777	si_a401	TRINITY_DN10589_c0_g1	766	786	777	-22.60	-15.10	0.668141592920354	14	7-21,780-766	1-6,786-781[UP5]	(((((((((((((((......&......)))))))))))))))	GUAUAAGCAAGGCAAGAACAA&AUAGAAUUGUUUUGUUUAUAU	3	0.999999999083711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN10589_c0_g1_777_TPlot.pdf
TRINITY_DN10589_c0_g1:861	si_a386	TRINITY_DN10589_c0_g1	850	870	861	-24.80	-16.40	0.661290322580645	4.5	1-16,870-855;18-20,853-851	17-17,854-854[SIL];21-21,850-850[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	CUUUUUAUUCUUAAUUUGGAA&UUUCGAAUUAAGAAUAUAGAA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN10589_c0_g1_861_TPlot.pdf
TRINITY_DN1058_c0_g1:571	si_a197	TRINITY_DN1058_c0_g1	561	580	571	-32.80	-22.80	0.695121951219512	5.5	2-12,579-569;14-19,568-563	1-1,580-580[UP5];13-13,x-x[BULq];20-21,562-561[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	CGGAUUUG-UGGUGAACAGGU&CCCUGUUCACUAAUAAAUCGA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a197_TRINITY_DN1058_c0_g1_571_TPlot.pdf
TRINITY_DN1058_c0_g1:700	si_s284	TRINITY_DN1058_c0_g1	688	708	700	-34.70	-23.60	0.680115273775216	5	1-5,708-704;7-14,703-696;15-21,694-688	6-6,x-x[BULq];x-x,695-695[BULt]	(((((((.((((((((-(((((&))))).))))))))-)))))))	CCGAUUGAACUAGGUG-AUUAU&AUAAUACGCCUAGU-CGAUUGG	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s284_TRINITY_DN1058_c0_g1_700_TPlot.pdf
TRINITY_DN1058_c0_g2:1054	si_s693	TRINITY_DN1058_c0_g2	1043	1063	1054	-23.90	-16.20	0.677824267782427	9	1-2,1063-1062;4-17,1060-1047	3-3,1061-1061[SIL];18-21,1046-1043[UP3]	....((((((((((((((.((&)).))))))))))))))....	UCUAGAAUUGGCUGAUUAUAC&GUUUAAUUAGUCGAUUUAUUA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN1058_c0_g2_1054_TPlot.pdf
TRINITY_DN1058_c0_g2:382	si_a346	TRINITY_DN1058_c0_g2	371	391	382	-25.90	-16.98	0.655598455598456	11.5	1-5,391-387;9-18,383-374	6-8,386-384[SIL];19-21,373-371[UP3]	...((((((((((...(((((&)))))...))))))))))...	UGGAGGAUUGAUGGGAUCGGG&CCCGAAAAUAUUAAUUCUAUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN1058_c0_g2_382_TPlot.pdf
TRINITY_DN10596_c0_g1:1624	si_a760	TRINITY_DN10596_c0_g1	1613	1633	1624	-31.10	-20.50	0.659163987138264	7	1-12,1633-1622;14-19,1620-1615	13-13,1621-1621[SIL];20-21,1614-1613[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GCCAAUUGCGAACUCAGAGGA&UCCUUUGGGUUUUUGAUUGAU	3	0.999999993855855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN10596_c0_g1_1624_TPlot.pdf
TRINITY_DN10599_c1_g1:216	si_s247	TRINITY_DN10599_c1_g1	205	225	216	-31.70	-23.40	0.738170347003155	5.5	2-13,224-213;16-21,210-205	1-1,225-225[UP5];14-15,212-211[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GAUAUAGAGGGAAAUGCUUGG&AUAGGCAUUUCCCGAUAUAUU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN10599_c1_g1_216_TPlot.pdf
TRINITY_DN10599_c1_g1:217	si_s246	TRINITY_DN10599_c1_g1	206	226	217	-31.70	-22.30	0.703470031545741	7	3-14,224-213;17-21,210-206	1-2,226-225[UP5];15-16,212-211[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	AUAUAGAGGGAAAUGCUUGGA&AAUAGGCAUUUCCCGAUAUAU	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN10599_c1_g1_217_TPlot.pdf
TRINITY_DN10609_c0_g1:1585	si_a870	TRINITY_DN10609_c0_g1	1573	1594	1585	-24.80	-16.30	0.657258064516129	8.5	1-9,1594-1586;11-15,1584-1580;16-19,1578-1575	10-10,1585-1585[SIL];x-x,1579-1579[BULt];20-21,1574-1573[UP3]	..((((.(((((.(((((((((&))))))))).)))))-))))..	AGUGCAGACUGGUUCUUUGAUG&UAUUAAAGAUUUAGU-UGCAAU	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN10609_c0_g1_1585_TPlot.pdf
TRINITY_DN10609_c0_g1:1756	si_s589	TRINITY_DN10609_c0_g1	1744	1765	1756	-32.70	-21.30	0.651376146788991	9.5	3-11,1763-1755;13-21,1752-1744	1-2,1765-1764[UP5];12-12,1754-1753[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	UGCUUGGAUGCUAUUUAUGAAG&AAUCAUGGAUA-AAUCCAAGCG	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s589_TRINITY_DN10609_c0_g1_1756_TPlot.pdf
TRINITY_DN10609_c0_g1:1757	si_s588	TRINITY_DN10609_c0_g1	1745	1766	1757	-31.20	-20.50	0.657051282051282	10	4-12,1763-1755;14-21,1752-1745	1-3,1766-1764[UP5];13-13,1754-1753[AILt]	((((((((..(((((((((...&...)))))))))-.))))))))	GCUUGGAUGCUAUUUAUGAAGA&AAAUCAUGGAUA-AAUCCAAGC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s588_TRINITY_DN10609_c0_g1_1757_TPlot.pdf
TRINITY_DN1060_c0_g1:142	si_a285	TRINITY_DN1060_c0_g1	131	154	142	-28.30	-18.40	0.65017667844523	13.5	1-9,154-146;10-15,142-137	x-x,145-143[BULt];16-21,136-131[UP3]	......((((((...(((((((((&)))))))))---))))))......	UCCACCGAUCCGUAUAGCGAUCUU&AAGAUCGCU---UGGAUUUAAAAA	2	0.999763926147321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN1060_c0_g1_142_TPlot.pdf
TRINITY_DN1060_c0_g1:146	si_a284	TRINITY_DN1060_c0_g1	132	155	146	-28.30	-18.70	0.660777385159011	13.5	2-10,154-146;11-16,142-137	1-1,155-155[UP5];x-x,145-143[BULt];17-21,136-132[UP3]	.....((((((...(((((((((.&.)))))))))---)))))).....	CCACCGAUCCGUAUAGCGAUCUUG&AAAGAUCGCU---UGGAUUUAAAA	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN1060_c0_g1_146_TPlot.pdf
TRINITY_DN10611_c0_g1:1009	si_s76	TRINITY_DN10611_c0_g1	998	1018	1009	-23.60	-15.70	0.665254237288135	5.5	1-14,1018-1005;16-19,1003-1000	15-15,1004-1004[SIL];20-21,999-998[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GUGAAGAGAAGGAAAAGAAAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10611_c0_g1_1009_TPlot.pdf
TRINITY_DN10611_c0_g1:1899	si_a484	TRINITY_DN10611_c0_g1	1887	1910	1899	-27.30	-18.00	0.659340659340659	9	1-8,1910-1903;9-15,1900-1894;16-21,1892-1887	x-x,1902-1901[BULt];x-x,1893-1893[BULt]	((((((.(((((((..((((((((&))))))))--)))))))-))))))	GAUGGCAAUGUUCUGAAUGUGACA&UGUUAUAU--AGAAUAU-GUCGUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN10611_c0_g1_1899_TPlot.pdf
TRINITY_DN10611_c0_g1:2196	si_s70	TRINITY_DN10611_c0_g1	2185	2206	2196	-25.80	-17.10	0.662790697674419	7	1-8,2206-2199;9-19,2197-2187	x-x,2198-2198[BULt];20-21,2186-2185[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	UAGAAGAGAAAAGCAUAGGAGU&ACUUCUAU-UUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10611_c0_g1_2196_TPlot.pdf
TRINITY_DN10611_c0_g1:2197	si_s69	TRINITY_DN10611_c0_g1	2186	2207	2197	-23.40	-17.30	0.739316239316239	7	2-9,2206-2199;10-20,2197-2187	1-1,2207-2207[UP5];x-x,2198-2198[BULt];21-21,2186-2186[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	AGAAGAGAAAAGCAUAGGAGUC&AACUUCUAU-UUUUUUUCUUUC	2	0.999997725566122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10611_c0_g1_2197_TPlot.pdf
TRINITY_DN10611_c0_g1:2199	si_s68	TRINITY_DN10611_c0_g1	2187	2208	2199	-23.10	-17.10	0.74025974025974	8	3-10,2206-2199;11-21,2197-2187	1-2,2208-2207[UP5];x-x,2198-2198[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GAAGAGAAAAGCAUAGGAGUCG&CAACUUCUAU-UUUUUUUCUUU	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10611_c0_g1_2199_TPlot.pdf
TRINITY_DN10617_c0_g1:1396	si_s82	TRINITY_DN10617_c0_g1	1385	1405	1396	-28.90	-20.00	0.69204152249135	6	1-13,1405-1393;16-18,1390-1388	14-15,1392-1391[SIL];19-21,1387-1385[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	CUAAAGUUGAGAGGAAAGAAA&UUUCUUUCCUUUCUUCUUCUU	2	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10617_c0_g1_1396_TPlot.pdf
TRINITY_DN10617_c1_g1:143	si_a146	TRINITY_DN10617_c1_g1	132	151	143	-29.70	-20.50	0.69023569023569	8	3-6,149-146;8-11,145-142;13-21,140-132	1-2,151-150[UP5];7-7,x-x[BULq];12-12,141-141[SIL]	(((((((((.((((-((((..&..)))).)))).)))))))))	GACCUUAAAUCAAC-GCGAAA&AAUCGUUGUUGUUUUAAGGUC	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN10617_c1_g1_143_TPlot.pdf
TRINITY_DN10618_c0_g1:1021	si_s76	TRINITY_DN10618_c0_g1	1010	1030	1021	-23.60	-16.90	0.716101694915254	11	3-18,1028-1013	1-2,1030-1029[UP5];19-21,1012-1010[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCUGGAGGAGAGAGGGAAAUU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10618_c0_g1_1021_TPlot.pdf
TRINITY_DN10618_c0_g1:1024	si_s80	TRINITY_DN10618_c0_g1	1013	1038	1024	-28.20	-21.10	0.74822695035461	15.5	2-7,1037-1032;8-21,1026-1013	1-1,1038-1038[UP5];x-x,1031-1027[BULt]	((((((((((((((.....((((((.&.))))))-----))))))))))))))	GGAGGAGAGAGGGAAAUUCAGAGGAC&UUUUUCU-----UUCCUUUCUUCUUC	4	0.999999999391695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN10618_c0_g1_1024_TPlot.pdf
TRINITY_DN10618_c0_g1:1027	si_s70	TRINITY_DN10618_c0_g1	1016	1037	1027	-25.80	-18.30	0.709302325581395	8.5	2-6,1036-1032;7-7,1030-1030;9-21,1028-1016	1-1,1037-1037[UP5];x-x,1031-1031[BULt];8-8,1029-1029[SIL]	(((((((((((((.(.(((((.&.)))))-).)))))))))))))	GGAGAGAGGGAAAUUCAGAGGA&ACUUCU-AUUUUUUUUCUUUCC	4	0.999999999850545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10618_c0_g1_1027_TPlot.pdf
TRINITY_DN10618_c0_g1:1167	si_a783	TRINITY_DN10618_c0_g1	1156	1176	1167	-24.70	-16.40	0.663967611336032	9.5	6-21,1171-1156	1-5,1176-1172[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAUAGAAAAAUAGAAUUCCC&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN10618_c0_g1_1167_TPlot.pdf
TRINITY_DN10618_c0_g1:1451	si_s46	TRINITY_DN10618_c0_g1	1440	1460	1451	-25.00	-16.60	0.664	9	3-9,1458-1452;11-11,1450-1450;13-21,1448-1440	1-2,1460-1459[UP5];10-10,1451-1451[SIL];12-12,1449-1449[SIL]	(((((((((.(.(((((((..&..))))))).).)))))))))	UAGCUUGAGUUGCAAUUGUAA&UAAUAAUUGGAUUUCAAGUUA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN10618_c0_g1_1451_TPlot.pdf
TRINITY_DN1061_c0_g1:1105	si_s825	TRINITY_DN1061_c0_g1	1094	1114	1105	-21.30	-14.00	0.657276995305164	10	5-18,1110-1097	1-4,1114-1111[UP5];19-21,1096-1094[UP3]	...((((((((((((((....&....))))))))))))))...	ACCAUUGUUUUUCAUUAAGUG&UUAAUAAUGAAAAACAAUUUG	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN1061_c0_g1_1105_TPlot.pdf
TRINITY_DN1061_c0_g1:1106	si_s824	TRINITY_DN1061_c0_g1	1095	1115	1106	-21.20	-14.00	0.660377358490566	11	6-19,1110-1097	1-5,1115-1111[UP5];20-21,1096-1095[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCAUUGUUUUUCAUUAAGUGU&CUUAAUAAUGAAAAACAAUUU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s824_TRINITY_DN1061_c0_g1_1106_TPlot.pdf
TRINITY_DN1061_c0_g1:366	si_a406	TRINITY_DN1061_c0_g1	355	375	366	-19.80	-13.40	0.676767676767677	10	1-14,375-362	15-21,361-355[UP3]	.......((((((((((((((&)))))))))))))).......	AAUGCAAAUAAACAGGGCAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999968164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1061_c0_g1_366_TPlot.pdf
TRINITY_DN1061_c0_g1:367	si_a405	TRINITY_DN1061_c0_g1	356	376	367	-19.80	-13.70	0.691919191919192	10	2-15,375-362	1-1,376-376[UP5];16-21,361-356[UP3]	......((((((((((((((.&.))))))))))))))......	AUGCAAAUAAACAGGGCAAUG&AAUUGUUUUGUUUAUAUUUAA	2	0.999999998248444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1061_c0_g1_367_TPlot.pdf
TRINITY_DN1061_c0_g1:616	si_a758	TRINITY_DN1061_c0_g1	603	625	616	-34.00	-23.10	0.679411764705882	9.5	1-11,625-615;12-16,612-608;19-21,605-603	x-x,614-613[BULt];17-18,607-606[SIL]	(((..(((((..(((((((((((&)))))))))))--)))))..)))	CAAGAAGAAAUUCCCGGAGGGGG&CCUCCUUUGGG--UUUUUGAUUG	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1061_c0_g1_616_TPlot.pdf
TRINITY_DN1061_c0_g1:617	si_a757	TRINITY_DN1061_c0_g1	606	626	617	-33.10	-21.60	0.652567975830816	10	2-12,625-615;15-17,612-610	1-1,626-626[UP5];13-14,614-613[SIL];18-21,609-606[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	GAAGAAAUUCCCGGAGGGGGA&ACCUCCUUUGGGUUUUUGAUU	3	0.999999999983356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1061_c0_g1_617_TPlot.pdf
TRINITY_DN1061_c0_g1:618	si_a756	TRINITY_DN1061_c0_g1	607	627	618	-33.10	-21.60	0.652567975830816	11	3-13,625-615;16-18,612-610	1-2,627-626[UP5];14-15,614-613[SIL];19-21,609-607[UP3]	...(((..(((((((((((..&..)))))))))))..)))...	AAGAAAUUCCCGGAGGGGGAA&AACCUCCUUUGGGUUUUUGAU	3	0.999999999886112	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1061_c0_g1_618_TPlot.pdf
TRINITY_DN1061_c0_g1:620	si_s79	TRINITY_DN1061_c0_g1	604	629	620	-26.20	-19.40	0.740458015267176	15	1-12,629-618;13-21,612-604	x-x,617-613[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	AAGAAGAAAUUCCCGGAGGGGGAAGA&UUUUUUCUUUCC-----UUUCUUCUU	3	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1061_c0_g1_620_TPlot.pdf
TRINITY_DN1061_c0_g1:621	si_s78	TRINITY_DN1061_c0_g1	605	630	621	-26.20	-19.00	0.725190839694656	10.5	1-13,630-618;14-21,612-605	x-x,617-613[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	AGAAGAAAUUCCCGGAGGGGGAAGAG&UUUUUUUCUUUCC-----UUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1061_c0_g1_621_TPlot.pdf
TRINITY_DN1061_c0_g1:622	si_a502	TRINITY_DN1061_c0_g1	612	631	622	-32.10	-22.50	0.700934579439252	8	1-7,631-625;9-14,623-618;17-21,616-612	8-8,624-624[SIL];15-16,617-617[AILq]	(((((.-((((((.(((((((&))))))).))))))..)))))	AUUCCC-GGAGGGGGAAGAGC&GUUUUUCGUCUUCCUUGGAAU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1061_c0_g1_622_TPlot.pdf
TRINITY_DN1061_c0_g1:624	si_a500	TRINITY_DN1061_c0_g1	614	633	624	-34.40	-23.10	0.671511627906977	8	1-9,633-625;11-16,623-618;19-21,616-614	10-10,624-624[SIL];17-18,617-617[AILq]	(((.-((((((.(((((((((&))))))))).))))))..)))	UCCC-GGAGGGGGAAGAGCGG&UCGUUUUUCGUCUUCCUUGGA	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1061_c0_g1_624_TPlot.pdf
TRINITY_DN1061_c0_g1:627	si_a497	TRINITY_DN1061_c0_g1	616	636	627	-32.00	-21.10	0.659375	12	4-12,633-625;14-19,623-618	1-3,636-634[UP5];13-13,624-624[SIL];20-21,617-616[UP3]	..((((((.(((((((((...&...))))))))).))))))..	CCGGAGGGGGAAGAGCGGGCG&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1061_c0_g1_627_TPlot.pdf
TRINITY_DN1061_c0_g1:628	si_a496	TRINITY_DN1061_c0_g1	617	637	628	-32.40	-21.10	0.651234567901235	13	5-13,633-625;15-20,623-618	1-4,637-634[UP5];14-14,624-624[SIL];21-21,617-617[UP3]	.((((((.(((((((((....&....))))))))).)))))).	CGGAGGGGGAAGAGCGGGCGA&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1061_c0_g1_628_TPlot.pdf
TRINITY_DN1061_c0_g1:629	si_s376	TRINITY_DN1061_c0_g1	618	638	629	-42.50	-27.78	0.653647058823529	10.5	2-9,637-630;13-15,626-624;17-20,622-619	1-1,638-638[UP5];10-12,629-627[SIL];16-16,623-623[SIL];21-21,618-618[UP3]	.((((.(((...((((((((.&.))))))))...))).)))).	GGAGGGGGAAGAGCGGGCGAA&AUCGCUCGCGUGUCCGCCUUA	3	0.999998604714447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN1061_c0_g1_629_TPlot.pdf
TRINITY_DN1061_c0_g1:647	si_a492	TRINITY_DN1061_c0_g1	632	655	647	-30.20	-19.70	0.652317880794702	14	1-8,655-648;10-12,647-645;13-21,640-632	9-9,x-x[BULq];x-x,644-641[BULt]	(((((((((....(((-((((((((&)))))))).)))----)))))))))	GGGCGAAGGCAGUGCG-CGUAUUCU&AGAAUAUGUCGU----UUUUCGUCU	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN1061_c0_g1_647_TPlot.pdf
TRINITY_DN10620_c1_g1:1520	si_a498	TRINITY_DN10620_c1_g1	1508	1529	1520	-33.50	-21.90	0.653731343283582	10	2-12,1528-1518;13-19,1516-1510	1-1,1529-1529[UP5];x-x,1517-1517[BULt];20-21,1509-1508[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	AUGGGAGGAUUGAGGAACGAUU&UGUCGUUUUUCG-UCUUCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN10620_c1_g1_1520_TPlot.pdf
TRINITY_DN10620_c1_g1:516	si_s86	TRINITY_DN10620_c1_g1	503	525	516	-32.90	-22.40	0.680851063829787	6	1-14,525-512;16-18,510-508;19-21,505-503	15-15,511-511[SIL];x-x,507-506[BULt]	(((..(((.((((((((((((((&)))))))))))))).)))--)))	AGCCAGAAAAAGGAGAGAGGAGA&UUUCCUUUCUUCUUCUUC--GCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10620_c1_g1_516_TPlot.pdf
TRINITY_DN10620_c1_g1:526	si_a495	TRINITY_DN10620_c1_g1	514	535	526	-31.90	-21.20	0.664576802507837	8	3-14,533-522;16-18,520-518;19-21,516-514	1-2,535-534[UP5];15-15,521-521[SIL];x-x,517-517[BULt]	(((.(((.((((((((((((..&..)))))))))))).)))-)))	GGAGAGAGGAGAAACGAUGUCG&AUAUGUCGUUUUUCGUCU-UCC	3	0.999999999204775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN10620_c1_g1_526_TPlot.pdf
TRINITY_DN10621_c0_g1:976	si_a459	TRINITY_DN10621_c0_g1	965	987	976	-23.20	-15.98	0.688793103448276	11	1-5,987-983;8-19,978-967	6-7,982-979[AILt];20-21,966-965[UP3]	..((((((((((((....(((((&)))))--..))))))))))))..	UGACAUAUUAUGUAAAAUACAAC&GUUGU--UAUAUAUAAUAUGUAA	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN10621_c0_g1_976_TPlot.pdf
TRINITY_DN10621_c0_g1:978	si_a457	TRINITY_DN10621_c0_g1	967	989	978	-23.50	-16.48	0.701276595744681	10	2-7,988-983;10-21,978-967	1-1,989-989[UP5];8-9,982-979[AILt]	((((((((((((....((((((.&.))))))--..))))))))))))	ACAUAUUAUGUAAAAUACAACAC&UUGUUGU--UAUAUAUAAUAUGU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN10621_c0_g1_978_TPlot.pdf
TRINITY_DN10626_c0_g1:3089	si_a81	TRINITY_DN10626_c0_g1	3078	3101	3089	-23.00	-16.40	0.71304347826087	8	1-9,3101-3093;10-19,3089-3080	x-x,3092-3090[BULt];20-21,3079-3078[UP3]	..((((((((((...(((((((((&)))))))))---))))))))))..	GCUUUCUUAAUAUAUAUGAAAAAC&GUUUUUCAU---UAUUAAGAAAAG	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN10626_c0_g1_3089_TPlot.pdf
TRINITY_DN1062_c0_g1:6447	si_s449	TRINITY_DN1062_c0_g1	6435	6456	6447	-23.60	-16.60	0.703389830508475	5	1-7,6456-6450;9-16,6448-6441;17-21,6439-6435	8-8,6449-6449[SIL];x-x,6440-6440[BULt]	(((((.((((((((.(((((((&))))))).))))))))-)))))	GGAUAUAUUGUUGUAAUGUAUG&UAUAUAUAACAACAAU-UAUCU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN1062_c0_g1_6447_TPlot.pdf
TRINITY_DN10630_c0_g1:1377	si_a795	TRINITY_DN10630_c0_g1	1366	1387	1377	-30.20	-20.70	0.685430463576159	9	1-9,1387-1379;10-17,1377-1370	x-x,1378-1378[BULt];18-21,1369-1366[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AAAGGGAUUGGAGGGAUAGAGA&UUUCUAUUU-UCCAAUCCGAAG	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN10630_c0_g1_1377_TPlot.pdf
TRINITY_DN10630_c0_g1:1381	si_a792	TRINITY_DN10630_c0_g1	1369	1390	1381	-27.60	-21.20	0.768115942028985	10	3-12,1388-1379;13-20,1377-1370	1-2,1390-1389[UP5];x-x,1378-1378[BULt];21-21,1369-1369[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	GGGAUUGGAGGGAUAGAGAGCG&AUUUUUCUAUUU-UCCAAUCCG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN10630_c0_g1_1381_TPlot.pdf
TRINITY_DN10630_c0_g1:1383	si_a790	TRINITY_DN10630_c0_g1	1371	1392	1383	-25.80	-17.60	0.682170542635659	8	1-2,1392-1391;5-14,1388-1379;15-21,1377-1371	3-4,1390-1389[SIL];x-x,1378-1378[BULt]	(((((((.((((((((((..((&))..))))))))))-)))))))	GAUUGGAGGGAUAGAGAGCGAG&CUAUUUUUCUAUUU-UCCAAUC	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN10630_c0_g1_1383_TPlot.pdf
TRINITY_DN10630_c0_g1:1425	si_s83	TRINITY_DN10630_c0_g1	1409	1434	1425	-30.90	-20.20	0.653721682847896	11	3-10,1432-1425;11-14,1423-1420;15-21,1415-1409	1-2,1434-1433[UP5];x-x,1424-1424[BULt];x-x,1419-1416[BULt]	(((((((....((((.((((((((..&..))))))))-))))----)))))))	GGAGAAGGAUCGAGAUAAGGAGAGGG&UUCUUUCCUU-UCUU----CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10630_c0_g1_1425_TPlot.pdf
TRINITY_DN10630_c0_g1:745	si_a410	TRINITY_DN10630_c0_g1	734	754	745	-17.80	-12.10	0.679775280898876	9	1-14,754-741	15-21,740-734[UP3]	.......((((((((((((((&)))))))))))))).......	UGGGGAAAAGUGUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999984248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN10630_c0_g1_745_TPlot.pdf
TRINITY_DN10630_c0_g1:952	si_s76	TRINITY_DN10630_c0_g1	940	962	952	-23.60	-16.90	0.716101694915254	7.5	1-9,962-954;10-15,952-947;16-21,945-940	x-x,953-953[BULt];x-x,946-946[BULt]	((((((.((((((.(((((((((&)))))))))-))))))-))))))	GAGAAAGGGAAAGCGAAAGGAGU&AUUUUUUUU-CUUUCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10630_c0_g1_952_TPlot.pdf
TRINITY_DN10636_c0_g1:3413	si_a73	TRINITY_DN10636_c0_g1	3402	3422	3413	-21.90	-14.70	0.671232876712329	7.5	1-10,3422-3413;12-17,3411-3406	11-11,3412-3412[SIL];18-21,3405-3402[UP3]	....((((((.((((((((((&)))))))))).))))))....	UCUUAUGAAGUACAAUUUGAG&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999927045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN10636_c0_g1_3413_TPlot.pdf
TRINITY_DN10636_c0_g3:3582	si_a803	TRINITY_DN10636_c0_g3	3571	3591	3582	-36.30	-23.70	0.652892561983471	9	2-15,3590-3577	1-1,3591-3591[UP5];16-21,3576-3571[UP3]	......((((((((((((((.&.))))))))))))))......	UUAUUACGCUUUGGGUUGGAU&UUCCAAUCCGAAGCGAAGAAG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a803_TRINITY_DN10636_c0_g3_3582_TPlot.pdf
TRINITY_DN10636_c2_g1:124	si_a21	TRINITY_DN10636_c2_g1	113	133	124	-24.30	-16.00	0.65843621399177	8.5	3-20,131-114	1-2,133-132[UP5];21-21,113-113[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUGGGAUUAGAAAUGAAUGAA&CCUAUUUAUUUUUAGUUCUAA	2	0.999948926366544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN10636_c2_g1_124_TPlot.pdf
TRINITY_DN10637_c0_g1:1166	si_s79	TRINITY_DN10637_c0_g1	1155	1175	1166	-26.20	-17.20	0.656488549618321	17.5	10-21,1166-1155	1-9,1175-1167[UP5]	((((((((((((.........&.........))))))))))))	GAGAAGAAAGGAUUUUUACGU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10637_c0_g1_1166_TPlot.pdf
TRINITY_DN10637_c0_g1:1222	si_s494	TRINITY_DN10637_c0_g1	1211	1231	1222	-19.80	-14.50	0.732323232323232	8	2-13,1230-1219;16-19,1216-1213	1-1,1231-1231[UP5];14-15,1218-1217[SIL];20-21,1212-1211[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	AGUGUUGGGUUUGUGUUUGAC&UUUAAAUAUAAACAAAACAAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN10637_c0_g1_1222_TPlot.pdf
TRINITY_DN10637_c0_g1:1670	si_s495	TRINITY_DN10637_c0_g1	1658	1679	1670	-19.80	-13.20	0.666666666666667	6	1-5,1679-1675;8-14,1672-1666;15-21,1664-1658	6-7,1674-1673[SIL];x-x,1665-1665[BULt]	(((((((.(((((((..(((((&)))))..)))))))-)))))))	GGUUGUUAUUGUUUAGUUUUAA&UUAAAUAUAAACAA-AACAAUU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN10637_c0_g1_1670_TPlot.pdf
TRINITY_DN10637_c0_g1:1672	si_s493	TRINITY_DN10637_c0_g1	1660	1681	1672	-19.80	-13.40	0.676767676767677	5	1-7,1681-1675;10-16,1672-1666;17-21,1664-1660	8-9,1674-1673[SIL];x-x,1665-1665[BULt]	(((((.(((((((..(((((((&)))))))..)))))))-)))))	UUGUUAUUGUUUAGUUUUAAAU&AUUUAAAUAUAAACAA-AACAA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN10637_c0_g1_1672_TPlot.pdf
TRINITY_DN10637_c0_g1:1673	si_s492	TRINITY_DN10637_c0_g1	1661	1682	1673	-20.10	-13.90	0.691542288557214	5	1-8,1682-1675;11-17,1672-1666;18-21,1664-1661	9-10,1674-1673[SIL];x-x,1665-1665[BULt]	((((.(((((((..((((((((&))))))))..)))))))-))))	UGUUAUUGUUUAGUUUUAAAUA&UAUUUAAAUAUAAACAA-AACA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN10637_c0_g1_1673_TPlot.pdf
TRINITY_DN10637_c0_g1:1674	si_s491	TRINITY_DN10637_c0_g1	1662	1683	1674	-19.50	-13.30	0.682051282051282	5	1-9,1683-1675;12-18,1672-1666;19-21,1664-1662	10-11,1674-1673[SIL];x-x,1665-1665[BULt]	(((.(((((((..(((((((((&)))))))))..)))))))-)))	GUUAUUGUUUAGUUUUAAAUAA&UUAUUUAAAUAUAAACAA-AAC	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN10637_c0_g1_1674_TPlot.pdf
TRINITY_DN10637_c0_g1:1675	si_s490	TRINITY_DN10637_c0_g1	1664	1684	1675	-17.80	-13.30	0.747191011235955	6	1-10,1684-1675;13-19,1672-1666	11-12,1674-1673[SIL];20-21,1665-1664[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	UAUUGUUUAGUUUUAAAUAAA&UUUAUUUAAAUAUAAACAAAA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN10637_c0_g1_1675_TPlot.pdf
TRINITY_DN10637_c0_g1:1678	si_s487	TRINITY_DN10637_c0_g1	1667	1687	1678	-18.40	-14.40	0.782608695652174	4	2-13,1686-1675;16-21,1672-1667	1-1,1687-1687[UP5];14-15,1674-1673[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UGUUUAGUUUUAAAUAAAUGG&AUAUUUAUUUAAAUAUAAACA	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN10637_c0_g1_1678_TPlot.pdf
TRINITY_DN10637_c0_g1:448	si_a407	TRINITY_DN10637_c0_g1	437	457	448	-19.80	-14.00	0.707070707070707	8.5	2-8,456-450;10-18,448-440	1-1,457-457[UP5];9-9,449-449[SIL];19-21,439-437[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	ACCUAGAUAUGAUCAGAACAC&UUGUUUUGUUUAUAUUUAAAU	3	0.999999980121405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN10637_c0_g1_448_TPlot.pdf
TRINITY_DN1063_c0_g1:276	si_a316	TRINITY_DN1063_c0_g1	264	283	276	-26.30	-17.80	0.67680608365019	7	1-5,283-279;8-11,278-275;12-21,273-264	6-7,x-x[BULq];x-x,274-274[BULt]	((((((((((.((((--(((((&)))))..))))-))))))))))	GAGAAAAUCAUUGGA--AAUCC&GGAUUUAUCCA-UGAUUUUUUU	4	0.999995989923084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN1063_c0_g1_276_TPlot.pdf
TRINITY_DN1063_c0_g1:748	si_a405	TRINITY_DN1063_c0_g1	736	757	748	-19.80	-13.10	0.661616161616162	7	2-15,756-743;16-19,741-738	1-1,757-757[UP5];x-x,742-742[BULt];20-21,737-736[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	AAAAAUAAUAAAUAAGACAGUG&AAUUGUUUUGUUUAU-AUUUAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1063_c0_g1_748_TPlot.pdf
TRINITY_DN10642_c0_g1:1003	si_s116	TRINITY_DN10642_c0_g1	991	1012	1003	-24.70	-17.00	0.688259109311741	2	1-19,1012-994;20-21,992-991	x-x,993-993[BULt]	((.(((((((((((((((((((&)))))))))))))))))))-))	ACAUUUUUUAUUUUUCUAUUUU&AAAAUAGAAAAAUAGAAGA-GU	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN10642_c0_g1_1003_TPlot.pdf
TRINITY_DN10642_c0_g1:1004	si_s115	TRINITY_DN10642_c0_g1	993	1013	1004	-25.90	-17.10	0.66023166023166	3	2-20,1012-994	1-1,1013-1013[UP5];21-21,993-993[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AUUUUUUAUUUUUCUAUUUUA&GAAAAUAGAAAAAUAGAAGAG	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s115_TRINITY_DN10642_c0_g1_1004_TPlot.pdf
TRINITY_DN1064_c0_g1:739	si_s47	TRINITY_DN1064_c0_g1	728	748	739	-26.30	-17.60	0.669201520912548	11.5	5-10,744-739;12-20,737-729	1-4,748-745[UP5];11-11,738-738[SIL];21-21,728-728[UP3]	.(((((((((.((((((....&....)))))).))))))))).	GUGACUUGAGUUCCAAUCACU&AAUAAUUGGAUUUCAAGUUAG	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN1064_c0_g1_739_TPlot.pdf
TRINITY_DN1064_c0_g1:741	si_s45	TRINITY_DN1064_c0_g1	730	750	741	-24.70	-16.30	0.659919028340081	13	7-12,744-739;14-21,737-730	1-6,750-745[UP5];13-13,738-738[SIL]	((((((((.((((((......&......)))))).))))))))	GACUUGAGUUCCAAUCACUUC&UUAAUAAUUGGAUUUCAAGUU	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN1064_c0_g1_741_TPlot.pdf
TRINITY_DN1064_c0_g1:947	si_a754	TRINITY_DN1064_c0_g1	936	958	947	-34.60	-22.80	0.658959537572254	9	1-8,958-951;10-17,947-940;19-21,938-936	9-9,950-948[AILt];18-18,939-939[SIL]	(((.((((((((...((((((((&))))))))--.)))))))).)))	CAAUAACCCAGGAAUGAGGUUCA&UGAACCUC--CUUUGGGUUUUUG	2	0.998065616705339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN1064_c0_g1_947_TPlot.pdf
TRINITY_DN10655_c0_g1:138	si_s18	TRINITY_DN10655_c0_g1	127	148	138	-27.50	-18.40	0.669090909090909	8	1-6,148-143;8-13,140-135;15-20,133-128	7-7,142-141[AILt];14-14,134-134[SIL];21-21,127-127[UP3]	.((((((.((((((..((((((&))))))-.)))))).)))))).	UGUUGCAUUCAAUGCCAGUGAU&AUUACU-AUAUUGAUUGCAACU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN10655_c0_g1_138_TPlot.pdf
TRINITY_DN10655_c0_g1:224	si_a317	TRINITY_DN10655_c0_g1	213	233	224	-24.30	-15.80	0.650205761316872	11	5-17,229-217	1-4,233-230[UP5];18-21,216-213[UP3]	....(((((((((((((....&....)))))))))))))....	UGCCAAAAUCAUGGAUACUUG&GAUUUAUCCAUGAUUUUUUUA	4	0.999999999997593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN10655_c0_g1_224_TPlot.pdf
TRINITY_DN10655_c0_g1:225	si_a316	TRINITY_DN10655_c0_g1	214	236	225	-26.30	-17.16	0.652471482889734	13	1-2,236-235;6-18,229-217	3-5,234-230[AILt];19-21,216-214[UP3]	...(((((((((((((.....((&))--...)))))))))))))...	GCCAAAAUCAUGGAUACUUGGCC&GG--AUUUAUCCAUGAUUUUUUU	4	0.999999999252227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN10655_c0_g1_225_TPlot.pdf
TRINITY_DN10655_c0_g1:227	si_a314	TRINITY_DN10655_c0_g1	216	238	227	-27.10	-18.56	0.684870848708487	11.5	1-4,238-235;8-20,229-217	5-7,234-230[AILt];21-21,216-216[UP3]	.(((((((((((((.....((((&))))--...))))))))))))).	CAAAAUCAUGGAUACUUGGCCAG&UUGG--AUUUAUCCAUGAUUUUU	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN10655_c0_g1_227_TPlot.pdf
TRINITY_DN10667_c0_g1:2095	si_a298	TRINITY_DN10667_c0_g1	2084	2104	2095	-28.10	-20.20	0.718861209964413	16.5	9-20,2096-2085	1-8,2104-2097[UP5];21-21,2084-2084[UP3]	.((((((((((((........&........)))))))))))).	CCCAAGCGGAUCUCCAGCAGC&UUUAAAAAAGAUUCGCUUGGA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN10667_c0_g1_2095_TPlot.pdf
TRINITY_DN10667_c0_g1:2358	si_a276	TRINITY_DN10667_c0_g1	2342	2367	2358	-37.90	-27.02	0.712928759894459	8.5	1-13,2367-2355;15-21,2348-2342	14-14,2354-2349[AILt]	(((((((......(((((((((((((&)))))))))))))-----.)))))))	CUGGGCGCAUCCUUCUUUUCGUGGGC&GCCUACGAAAAGA-----UCGCUUGG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN10667_c0_g1_2358_TPlot.pdf
TRINITY_DN10667_c0_g1:2359	si_a275	TRINITY_DN10667_c0_g1	2335	2368	2359	-37.00	-28.40	0.767567567567567	14.5	1-14,2368-2355;15-21,2341-2335	x-x,2354-2342[BULt]	(((((((.............((((((((((((((&))))))))))))))-------------)))))))	CAAGCGGCUGGGCGCAUCCUUCUUUUCGUGGGCG&CGCCUACGAAAAGA-------------UCGCUUG	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a275_TRINITY_DN10667_c0_g1_2359_TPlot.pdf
TRINITY_DN10667_c0_g1:2363	si_a271	TRINITY_DN10667_c0_g1	2352	2372	2363	-34.60	-24.20	0.699421965317919	11	5-18,2368-2355	1-4,2372-2369[UP5];19-21,2354-2352[UP3]	...((((((((((((((....&....))))))))))))))...	CCUUCUUUUCGUGGGCGGACU&CAAACGCCUACGAAAAGAUCG	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a271_TRINITY_DN10667_c0_g1_2363_TPlot.pdf
TRINITY_DN10667_c0_g1:3048	si_a152	TRINITY_DN10667_c0_g1	3036	3057	3048	-29.20	-19.50	0.667808219178082	9.5	1-9,3057-3049;12-15,3046-3043;16-20,3041-3037	10-11,3048-3047[SIL];x-x,3042-3042[BULt];21-21,3036-3036[UP3]	.(((((.((((..(((((((((&)))))))))..))))-))))).	CGGAUUCGACCAGGAAGCAGCA&UGUUGUUUUAAGGUC-AAUCUA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN10667_c0_g1_3048_TPlot.pdf
TRINITY_DN10667_c0_g1:3050	si_a150	TRINITY_DN10667_c0_g1	3038	3059	3050	-29.90	-21.90	0.732441471571906	7	1-11,3059-3049;14-17,3046-3043;18-21,3041-3038	12-13,3048-3047[SIL];x-x,3042-3042[BULt]	((((.((((..(((((((((((&)))))))))))..))))-))))	GAUUCGACCAGGAAGCAGCAAC&GUUGUUGUUUUAAGGUC-AAUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN10667_c0_g1_3050_TPlot.pdf
TRINITY_DN10667_c0_g1:3051	si_a149	TRINITY_DN10667_c0_g1	3040	3060	3051	-29.40	-20.10	0.683673469387755	9	2-12,3059-3049;15-18,3046-3043	1-1,3060-3060[UP5];13-14,3048-3047[SIL];19-21,3042-3040[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	UUCGACCAGGAAGCAGCAACU&CGUUGUUGUUUUAAGGUCAAU	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN10667_c0_g1_3051_TPlot.pdf
TRINITY_DN10667_c0_g1:3053	si_a147	TRINITY_DN10667_c0_g1	3042	3062	3053	-30.40	-20.10	0.661184210526316	10.5	4-14,3059-3049;17-20,3046-3043	1-3,3062-3060[UP5];15-16,3048-3047[SIL];21-21,3042-3042[UP3]	.((((..(((((((((((...&...)))))))))))..)))).	CGACCAGGAAGCAGCAACUGC&AUCGUUGUUGUUUUAAGGUCA	4	0.999999540968882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN10667_c0_g1_3053_TPlot.pdf
TRINITY_DN10667_c0_g1:3054	si_a146	TRINITY_DN10667_c0_g1	3043	3063	3054	-29.70	-19.70	0.663299663299663	11.5	5-15,3059-3049;18-21,3046-3043	1-4,3063-3060[UP5];16-17,3048-3047[SIL]	((((..(((((((((((....&....)))))))))))..))))	GACCAGGAAGCAGCAACUGCU&AAUCGUUGUUGUUUUAAGGUC	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN10667_c0_g1_3054_TPlot.pdf
TRINITY_DN10668_c0_g1:1616	si_s241	TRINITY_DN10668_c0_g1	1605	1624	1616	-35.20	-24.30	0.690340909090909	8.5	3-6,1622-1619;8-19,1618-1607	1-2,1624-1623[UP5];7-7,x-x[BULq];20-21,1606-1605[UP3]	..((((((((((((-((((..&..)))).))))))))))))..	AUGGGAAGUGCCUA-UGGUAA&GAAUCAAUAGGCAUUUCCCGA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s241_TRINITY_DN10668_c0_g1_1616_TPlot.pdf
TRINITY_DN1066_c0_g1:1917	si_s888	TRINITY_DN1066_c0_g1	1905	1926	1917	-26.80	-17.50	0.652985074626866	14	6-11,1921-1916;12-20,1914-1906	1-5,1926-1922[UP5];x-x,1915-1915[BULt];21-21,1905-1905[UP3]	.(((((((((.((((((.....&.....))))))-))))))))).	UGGAGGAAGCACUGUUUUUGUG&AAAAUAAAUAG-GCUUUCUCUU	4	0.99999948044527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN1066_c0_g1_1917_TPlot.pdf
TRINITY_DN1066_c0_g2:1203	si_a425	TRINITY_DN1066_c0_g2	1192	1211	1203	-30.80	-20.60	0.668831168831169	4.5	1-8,1211-1204;10-12,1203-1201;14-21,1199-1192	9-9,x-x[BULq];13-13,1200-1200[SIL]	((((((((.(((-((((((((&)))))))).))).))))))))	CCAAUGGAACCU-UAUUUGUU&AAUAAAUAUAGGAUCCGUUGG	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN1066_c0_g2_1203_TPlot.pdf
TRINITY_DN1066_c0_g2:1228	si_s181	TRINITY_DN1066_c0_g2	1217	1237	1228	-34.60	-24.80	0.716763005780347	8.5	3-11,1235-1227;13-21,1225-1217	1-2,1237-1236[UP5];12-12,1226-1226[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAUGGUUGUCGCUCGGGCGGA&GAUGCCCGAGUAACGAUUAUU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN1066_c0_g2_1228_TPlot.pdf
TRINITY_DN1066_c1_g1:3759	si_s829	TRINITY_DN1066_c1_g1	3748	3768	3759	-23.30	-15.50	0.665236051502146	14	8-21,3761-3748	1-7,3768-3762[UP5]	((((((((((((((.......&.......))))))))))))))	CUUUCGAGUUGUUUAACUAGU&UAAUGAAAAACAAUUUGAAAG	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s829_TRINITY_DN1066_c1_g1_3759_TPlot.pdf
TRINITY_DN1066_c3_g1:368	si_s72	TRINITY_DN1066_c3_g1	357	378	368	-24.10	-17.00	0.705394190871369	8.5	2-5,377-374;6-19,372-359	1-1,378-378[UP5];x-x,373-373[BULt];20-21,358-357[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	AUGGGAAGAAGAAAAAUUGGGU&UUCUA-UUUUUUUUCUUUCCUU	2	0.999999999966539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1066_c3_g1_368_TPlot.pdf
TRINITY_DN10670_c0_g1:1018	si_a785	TRINITY_DN10670_c0_g1	1007	1027	1018	-25.90	-17.30	0.667953667953668	10	2-15,1026-1013	1-1,1027-1027[UP5];16-21,1012-1007[UP3]	......((((((((((((((.&.))))))))))))))......	GUAGAGAGAGAGAUGGAAGAA&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN10670_c0_g1_1018_TPlot.pdf
TRINITY_DN10670_c0_g1:1020	si_a783	TRINITY_DN10670_c0_g1	1009	1029	1020	-24.70	-17.30	0.700404858299595	11.5	4-17,1026-1013	1-3,1029-1027[UP5];18-21,1012-1009[UP3]	....((((((((((((((...&...))))))))))))))....	AGAGAGAGAGAUGGAAGAACU&AACUCUUCUAUUUUUCUAUUU	3	0.999999962005284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN10670_c0_g1_1020_TPlot.pdf
TRINITY_DN10670_c0_g1:1152	si_a80	TRINITY_DN10670_c0_g1	1141	1161	1152	-22.10	-15.00	0.678733031674208	6.5	1-8,1161-1154;10-17,1152-1145	9-9,1153-1153[SIL];18-21,1144-1141[UP3]	....((((((((.((((((((&)))))))).))))))))....	AAAACUUGAUAAAGAAAAACA&UGUUUUUCAUUAUUAAGAAAA	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN10670_c0_g1_1152_TPlot.pdf
TRINITY_DN10670_c0_g1:1155	si_a77	TRINITY_DN10670_c0_g1	1144	1164	1155	-22.20	-15.90	0.716216216216216	6.5	3-11,1162-1154;13-20,1152-1145	1-2,1164-1163[UP5];12-12,1153-1153[SIL];21-21,1144-1144[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	ACUUGAUAAAGAAAAACAAGA&AAUUGUUUUUCAUUAUUAAGA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN10670_c0_g1_1155_TPlot.pdf
TRINITY_DN10670_c0_g1:1156	si_a76	TRINITY_DN10670_c0_g1	1145	1165	1156	-21.20	-15.90	0.75	6.5	4-12,1162-1154;14-21,1152-1145	1-3,1165-1163[UP5];13-13,1153-1153[SIL]	((((((((.(((((((((...&...))))))))).))))))))	CUUGAUAAAGAAAAACAAGAA&AAAUUGUUUUUCAUUAUUAAG	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN10670_c0_g1_1156_TPlot.pdf
TRINITY_DN10670_c0_g1:1222	si_a494	TRINITY_DN10670_c0_g1	1211	1231	1222	-29.50	-19.30	0.654237288135593	14	8-21,1224-1211	1-7,1231-1225[UP5]	((((((((((((((.......&.......))))))))))))))	GGGGACGAAAAACGUGAAAAA&AAUAUGUCGUUUUUCGUCUUC	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN10670_c0_g1_1222_TPlot.pdf
TRINITY_DN10670_c0_g1:1460	si_a411	TRINITY_DN10670_c0_g1	1449	1469	1460	-17.90	-11.70	0.653631284916201	10.5	1-13,1469-1457	14-21,1456-1449[UP3]	........(((((((((((((&)))))))))))))........	GUAUUGAAGAAUGUGAACAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN10670_c0_g1_1460_TPlot.pdf
TRINITY_DN10670_c0_g1:1461	si_a410	TRINITY_DN10670_c0_g1	1450	1470	1461	-17.80	-12.60	0.707865168539326	9.5	1-14,1470-1457	15-21,1456-1450[UP3]	.......((((((((((((((&)))))))))))))).......	UAUUGAAGAAUGUGAACAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999998456089634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN10670_c0_g1_1461_TPlot.pdf
TRINITY_DN10670_c0_g1:1894	si_a789	TRINITY_DN10670_c0_g1	1882	1903	1894	-24.80	-17.70	0.713709677419355	7	2-11,1902-1893;13-21,1890-1882	1-1,1903-1903[UP5];12-12,1892-1891[AILt]	(((((((((..((((((((((.&.))))))))))-.)))))))))	AUUGGAGGAAAAGAAAAGUAGC&UCUAUUUUUCU-AUUUUCCAAU	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN10670_c0_g1_1894_TPlot.pdf
TRINITY_DN10672_c0_g1:60	si_a13	TRINITY_DN10672_c0_g1	49	70	60	-26.80	-17.50	0.652985074626866	9.5	1-9,70-62;10-14,60-56	x-x,61-61[BULt];15-21,55-49[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GCCUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	4	0.999067011191199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN10672_c0_g1_60_TPlot.pdf
TRINITY_DN10672_c0_g3:37	si_a13	TRINITY_DN10672_c0_g3	26	47	37	-26.80	-17.50	0.652985074626866	9.5	1-9,47-39;10-14,37-33	x-x,38-38[BULt];15-21,32-26[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GCCUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN10672_c0_g3_37_TPlot.pdf
TRINITY_DN10672_c0_g3:39	si_a12	TRINITY_DN10672_c0_g3	27	48	39	-26.80	-17.80	0.664179104477612	9.5	2-10,47-39;11-15,37-33	1-1,48-48[UP5];x-x,38-38[BULt];16-21,32-27[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	CCUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	3	0.997062604531715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN10672_c0_g3_39_TPlot.pdf
TRINITY_DN10672_c0_g5:35	si_a13	TRINITY_DN10672_c0_g5	24	45	35	-26.80	-17.50	0.652985074626866	9.5	1-9,45-37;10-14,35-31	x-x,36-36[BULt];15-21,30-24[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GCCUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN10672_c0_g5_35_TPlot.pdf
TRINITY_DN10673_c0_g1:2510	si_a745	TRINITY_DN10673_c0_g1	2499	2519	2510	-42.00	-28.10	0.669047619047619	11	1-5,2519-2515;7-11,2513-2509;14-17,2506-2503	6-6,2514-2514[SIL];12-13,2508-2507[SIL];18-21,2502-2499[UP3]	....((((..(((((.(((((&))))).)))))..))))....	AUUUGAGGGGCGUGGGCGGGG&CCCUGGCCAUGAACCUCCUUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN10673_c0_g1_2510_TPlot.pdf
TRINITY_DN10673_c0_g1:2522	si_a185	TRINITY_DN10673_c0_g1	2511	2531	2522	-31.70	-20.70	0.652996845425867	16.5	8-21,2524-2511	1-7,2531-2525[UP5]	((((((((((((((.......&.......))))))))))))))	UGGGCGGGGAGAGGGGCGAGA&GAUAAUAUCUUUCCCUGUUCA	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN10673_c0_g1_2522_TPlot.pdf
TRINITY_DN10673_c0_g1:2671	si_s72	TRINITY_DN10673_c0_g1	2660	2680	2671	-24.10	-15.90	0.659751037344398	7.5	2-10,2679-2671;11-16,2669-2664;18-21,2663-2660	1-1,2680-2680[UP5];x-x,2670-2670[BULt];17-17,x-x[BULq]	((((-((((((.(((((((((.&.)))))))))-)))))).))))	AAGG-AGGAGACGAAAAUGGAG&UUCUAUUUUU-UUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10673_c0_g1_2671_TPlot.pdf
TRINITY_DN10673_c0_g1:2681	si_a786	TRINITY_DN10673_c0_g1	2670	2691	2681	-26.60	-20.60	0.774436090225564	7.5	1-8,2691-2684;9-20,2682-2671	x-x,2683-2683[BULt];21-21,2670-2670[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	CGAAAAUGGAGAAGGUGGAGGA&UCUUCUAU-UUUUCUAUUUUCC	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN10673_c0_g1_2681_TPlot.pdf
TRINITY_DN10673_c0_g1:2686	si_a782	TRINITY_DN10673_c0_g1	2674	2695	2686	-26.40	-18.40	0.696969696969697	11	4-12,2692-2684;13-21,2682-2674	1-3,2695-2693[UP5];x-x,2683-2683[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	AAUGGAGAAGGUGGAGGAGAGC&CAACUCUUCUAU-UUUUCUAUU	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN10673_c0_g1_2686_TPlot.pdf
TRINITY_DN10673_c0_g1:2687	si_s806	TRINITY_DN10673_c0_g1	2676	2696	2687	-28.60	-20.10	0.702797202797203	12	4-8,2693-2689;10-20,2687-2677	1-3,2696-2694[UP5];9-9,2688-2688[SIL];21-21,2676-2676[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	UGGAGAAGGUGGAGGAGAGCG&UUAUCUUCGUUACCUUUUCUU	4	0.999985579703665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN10673_c0_g1_2687_TPlot.pdf
TRINITY_DN10673_c0_g1:2689	si_s804	TRINITY_DN10673_c0_g1	2678	2698	2689	-27.90	-19.00	0.681003584229391	14	6-10,2693-2689;12-21,2687-2678	1-5,2698-2694[UP5];11-11,2688-2688[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GAGAAGGUGGAGGAGAGCGCC&UUUUAUCUUCGUUACCUUUUC	4	0.999999869687671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN10673_c0_g1_2689_TPlot.pdf
TRINITY_DN10673_c0_g1:3050	si_s882	TRINITY_DN10673_c0_g1	3039	3058	3050	-26.30	-17.10	0.650190114068441	3.5	1-4,3058-3055;6-16,3054-3044;18-21,3042-3039	5-5,x-x[BULq];17-17,3043-3043[SIL]	((((.(((((((((((-((((&)))).))))))))))).))))	AAGUGUAUUUAUUUUU-GUUC&GAACUAAAAAUAAAUAGGCUU	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN10673_c0_g1_3050_TPlot.pdf
TRINITY_DN10673_c0_g1:913	si_a186	TRINITY_DN10673_c0_g1	902	922	913	-31.50	-28.60	0.907936507936508	3.5	1-5,922-918;7-21,916-902	6-6,917-917[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GUGGACAGGGAGAGACAUUAU&AUAAUAUCUUUCCCUGUUCAC	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN10673_c0_g1_913_TPlot.pdf
TRINITY_DN10677_c0_g1:2411	si_a456	TRINITY_DN10677_c0_g1	2400	2420	2411	-22.80	-15.60	0.684210526315789	5.5	1-18,2420-2403	19-21,2402-2400[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCCAUUGUAUAUAAUAAUAAU&AUUGUUGUUAUAUAUAAUAUG	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN10677_c0_g1_2411_TPlot.pdf
TRINITY_DN10677_c0_g1:2412	si_a455	TRINITY_DN10677_c0_g1	2401	2421	2412	-21.10	-15.80	0.748815165876777	5.5	2-19,2420-2403	1-1,2421-2421[UP5];20-21,2402-2401[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CCAUUGUAUAUAAUAAUAAUA&AAUUGUUGUUAUAUAUAAUAU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN10677_c0_g1_2412_TPlot.pdf
TRINITY_DN10677_c0_g1:2413	si_a454	TRINITY_DN10677_c0_g1	2402	2422	2413	-21.30	-15.80	0.741784037558685	6.5	3-20,2420-2403	1-2,2422-2421[UP5];21-21,2402-2402[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAUUGUAUAUAAUAAUAAUAC&UAAUUGUUGUUAUAUAUAAUA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN10677_c0_g1_2413_TPlot.pdf
TRINITY_DN10678_c0_g1:453	si_s706	TRINITY_DN10678_c0_g1	440	462	453	-29.40	-19.40	0.659863945578231	7.5	1-4,462-459;6-15,457-448;16-21,445-440	5-5,458-458[SIL];x-x,447-446[BULt]	((((((..((((((((((.((((&)))).))))))))))--))))))	UUUCCUGUUGUUCGCUGAGGAAU&AUUUAUUAGUGAACA--GGGAAA	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN10678_c0_g1_453_TPlot.pdf
TRINITY_DN1067_c0_g1:1907	si_a382	TRINITY_DN1067_c0_g1	1896	1916	1907	-24.60	-16.50	0.670731707317073	5.5	1-13,1916-1904;16-21,1901-1896	14-15,1903-1902[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	AUAUUUAGAGUUUGAAAUCGU&AUGAUUUCGAAUUAAGAAUAU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN1067_c0_g1_1907_TPlot.pdf
TRINITY_DN1067_c0_g1:197	si_a545	TRINITY_DN1067_c0_g1	183	206	197	-28.10	-19.94	0.709608540925267	10.5	2-11,205-196;13-21,191-183	1-1,206-206[UP5];12-12,195-192[AILt]	(((((((((....((((((((((.&.))))))))))---.)))))))))	AUGAAGAAAAAGAAGAUUGAGCCC&CGGUUCAAUCU---AUUUCUUUAU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN1067_c0_g1_197_TPlot.pdf
TRINITY_DN1067_c0_g1:887	si_s78	TRINITY_DN1067_c0_g1	875	896	887	-26.20	-17.80	0.679389312977099	13.5	6-12,891-885;13-21,883-875	1-5,896-892[UP5];x-x,884-884[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	AGAAGGAAGAGAAGGGACUCCA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1067_c0_g1_887_TPlot.pdf
TRINITY_DN10680_c0_g1:1302	si_a319	TRINITY_DN10680_c0_g1	1291	1312	1302	-22.40	-16.20	0.723214285714286	6	1-6,1312-1307;7-20,1305-1292	x-x,1306-1306[BULt];21-21,1291-1291[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	CAUAAGAAGAUUAUGUGGUAAA&UUUAUC-CAUGAUUUUUUUAUU	1	0.121556973464336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN10680_c0_g1_1302_TPlot.pdf
TRINITY_DN10681_c0_g1:382	si_s78	TRINITY_DN10681_c0_g1	370	391	382	-26.20	-21.90	0.83587786259542	4.5	2-14,390-378;16-21,375-370	1-1,391-391[UP5];15-15,377-376[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	AGAAGACUGGGAGAGAAAAAAC&UUUUUUUCUUUCCU-UUCUUCU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10681_c0_g1_382_TPlot.pdf
TRINITY_DN10681_c0_g1:504	si_s79	TRINITY_DN10681_c0_g1	492	513	504	-26.20	-18.30	0.698473282442748	8.5	3-12,511-502;14-16,500-498;17-21,496-492	1-2,513-512[UP5];13-13,501-501[SIL];x-x,497-497[BULt]	(((((.(((.((((((((((..&..)))))))))).)))-)))))	GAGAACGAAUGGAGAGAGAGUG&UUUUUUCUUUCCUUUC-UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10681_c0_g1_504_TPlot.pdf
TRINITY_DN10686_c0_g1:1141	si_a401	TRINITY_DN10686_c0_g1	1130	1151	1141	-22.60	-16.40	0.725663716814159	7.5	4-9,1148-1143;10-21,1141-1130	1-3,1151-1149[UP5];x-x,1142-1142[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AUGUAAACAAAAUCAAUUCCAU&AUAGAAUUG-UUUUGUUUAUAU	0	0.125041924441849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN10686_c0_g1_1141_TPlot.pdf
TRINITY_DN10689_c0_g1:1407	si_a22	TRINITY_DN10689_c0_g1	1396	1416	1407	-23.50	-16.60	0.706382978723404	8	1-13,1416-1404;15-18,1402-1399	14-14,1403-1403[SIL];19-21,1398-1396[UP3]	...((((.(((((((((((((&))))))))))))).))))...	ACAAGAAGUAGAAAUAGGUGG&CUAUUUAUUUUUAGUUCUAAG	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN10689_c0_g1_1407_TPlot.pdf
TRINITY_DN10689_c0_g1:1535	si_a892	TRINITY_DN10689_c0_g1	1524	1544	1535	-21.30	-15.30	0.71830985915493	5	1-16,1544-1529	17-21,1528-1524[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUAAUUAUUAUUACUAUAUU&AAUAUAGUAAUAAUAAGUAAU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN10689_c0_g1_1535_TPlot.pdf
TRINITY_DN10689_c0_g1:1540	si_a887	TRINITY_DN10689_c0_g1	1529	1549	1540	-22.90	-15.10	0.65938864628821	9	6-21,1544-1529	1-5,1549-1545[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAUUAUUACUAUAUUAAAGU&CAAUCAAUAUAGUAAUAAUAA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN10689_c0_g1_1540_TPlot.pdf
TRINITY_DN1068_c1_g1:17	si_s567	TRINITY_DN1068_c1_g1	6	30	17	-30.60	-20.50	0.669934640522876	12	1-8,30-23;9-18,18-9	x-x,22-19[BULt];19-21,8-6[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	UUGUAUUCCUUGUAAAUUCCGAAAA&UUUUCGGG----ACAAGGAAUAAAA	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN1068_c1_g1_17_TPlot.pdf
TRINITY_DN10691_c0_g1:1154	si_s71	TRINITY_DN10691_c0_g1	1143	1163	1154	-25.70	-17.00	0.66147859922179	7	1-5,1163-1159;7-19,1157-1145	6-6,1158-1158[SIL];20-21,1144-1143[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AUGAAAGGGAAAAGAAGGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10691_c0_g1_1154_TPlot.pdf
TRINITY_DN10691_c0_g1:1155	si_s70	TRINITY_DN10691_c0_g1	1144	1164	1155	-25.80	-17.60	0.682170542635659	7	2-6,1163-1159;8-20,1157-1145	1-1,1164-1164[UP5];7-7,1158-1158[SIL];21-21,1144-1144[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UGAAAGGGAAAAGAAGGAAGC&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999919031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10691_c0_g1_1155_TPlot.pdf
TRINITY_DN10691_c0_g1:1156	si_s69	TRINITY_DN10691_c0_g1	1145	1165	1156	-23.40	-17.60	0.752136752136752	8	3-7,1163-1159;9-21,1157-1145	1-2,1165-1164[UP5];8-8,1158-1158[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGGGAAAAGAAGGAAGCC&AACUUCUAUUUUUUUUCUUUC	3	0.999999863978855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN10691_c0_g1_1156_TPlot.pdf
TRINITY_DN10691_c0_g1:1246	si_a539	TRINITY_DN10691_c0_g1	1234	1255	1246	-32.70	-21.50	0.657492354740061	7.5	1-4,1255-1252;6-13,1250-1243;15-19,1240-1236	5-5,1251-1251[SIL];14-14,1242-1241[AILt];20-21,1235-1234[UP3]	..(((((..((((((((.((((&)))).))))))))-.)))))..	UCAUGGAGCUGAACCGGCCGCU&AGCGAUCGGUUCA-AUCUAUUU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN10691_c0_g1_1246_TPlot.pdf
TRINITY_DN10691_c0_g1:1459	si_a419	TRINITY_DN10691_c0_g1	1448	1468	1459	-23.00	-15.00	0.652173913043478	5.5	1-15,1468-1454;17-18,1453-1452;19-21,1450-1448	16-16,x-x[BULq];x-x,1451-1451[BULt]	(((.((-(((((((((((((((&))))))))))))))).))-)))	GAUACC-GUAUUUGUUUGGAUA&UAUUUAAAUAAAUAUAGG-AUC	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN10691_c0_g1_1459_TPlot.pdf
TRINITY_DN10691_c0_g1:1464	si_a414	TRINITY_DN10691_c0_g1	1453	1471	1464	-18.10	-11.80	0.651933701657459	10	1-3,1471-1469;6-20,1468-1454	4-5,x-x[BULq];21-21,1453-1453[UP3]	.(((((((((((((((--(((&)))..))))))))))))))).	CGUAUUUGUUUGGAUA--GGC&GUUUAUAUUUAAAUAAAUAUA	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN10691_c0_g1_1464_TPlot.pdf
TRINITY_DN10691_c0_g1:1465	si_a413	TRINITY_DN10691_c0_g1	1454	1472	1465	-18.40	-12.60	0.684782608695652	9	1-4,1472-1469;7-21,1468-1454	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GUAUUUGUUUGGAUA--GGCA&UGUUUAUAUUUAAAUAAAUAU	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN10691_c0_g1_1465_TPlot.pdf
TRINITY_DN10691_c0_g1:1466	si_a412	TRINITY_DN10691_c0_g1	1455	1473	1466	-18.30	-12.10	0.66120218579235	8.5	1-5,1473-1469;8-21,1468-1455	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	UAUUUGUUUGGAUA--GGCAA&UUGUUUAUAUUUAAAUAAAUA	3	0.999999706441462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN10691_c0_g1_1466_TPlot.pdf
TRINITY_DN10691_c0_g1:572	si_s8	TRINITY_DN10691_c0_g1	561	581	572	-21.30	-13.90	0.652582159624413	11.5	3-8,579-574;10-18,572-564	1-2,581-580[UP5];9-9,573-573[SIL];19-21,563-561[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	AAAGUGGUGGUAUUAGGUAUC&AUUACUUAUUAUUACUAUAUU	3	0.999999990012321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN10691_c0_g1_572_TPlot.pdf
TRINITY_DN10691_c0_g1:759	si_s490	TRINITY_DN10691_c0_g1	748	769	759	-17.80	-11.70	0.657303370786517	8	1-7,769-763;9-18,760-751	8-8,762-761[AILt];19-21,750-748[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AUAUGUUUAUGUUGGAAAUAAA&UUUAUUU-AAAUAUAAACAAAA	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN10691_c0_g1_759_TPlot.pdf
TRINITY_DN10691_c0_g1:843	si_s196	TRINITY_DN10691_c0_g1	833	852	843	-29.30	-19.32	0.65938566552901	8.5	2-10,851-843;15-21,839-833	1-1,852-852[UP5];11-14,842-840[AILq]	(((((((...-(((((((((.&.)))))))))....)))))))	GCUGGUAAAG-CCAAAGUAAC&AUUAUUUUGGAAUGUACCAGU	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN10691_c0_g1_843_TPlot.pdf
TRINITY_DN10691_c0_g1:912	si_s812	TRINITY_DN10691_c0_g1	901	927	912	-26.40	-17.50	0.662878787878788	18.5	1-5,927-923;6-18,916-904	x-x,922-917[BULt];19-21,903-901[UP3]	...(((((((((((((......(((((&)))))------)))))))))))))...	AGCAUUAGGAGAAGGUUCCAAAGGCGA&UCGUU------ACCUUUUCUUAAUAAU	3	0.999989647362308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN10691_c0_g1_912_TPlot.pdf
TRINITY_DN10691_c0_g1:913	si_s811	TRINITY_DN10691_c0_g1	902	928	913	-26.40	-17.70	0.670454545454545	18.5	2-6,927-923;7-19,916-904	1-1,928-928[UP5];x-x,922-917[BULt];20-21,903-902[UP3]	..(((((((((((((......(((((.&.)))))------)))))))))))))..	GCAUUAGGAGAAGGUUCCAAAGGCGAU&UUCGUU------ACCUUUUCUUAAUAA	3	0.999997638163536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN10691_c0_g1_913_TPlot.pdf
TRINITY_DN10695_c0_g1:180	si_a788	TRINITY_DN10695_c0_g1	169	189	180	-24.80	-16.30	0.657258064516129	6	1-16,189-174	17-21,173-169[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAAUAAAUAGAAAAGUAGAA&UUCUAUUUUUCUAUUUUCCAA	2	0.99999999985824	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN10695_c0_g1_180_TPlot.pdf
TRINITY_DN10695_c0_g1:181	si_a787	TRINITY_DN10695_c0_g1	170	190	181	-26.30	-18.60	0.707224334600761	5	1-17,190-174	18-21,173-170[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAAUAAAUAGAAAAGUAGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN10695_c0_g1_181_TPlot.pdf
TRINITY_DN10695_c0_g1:182	si_a786	TRINITY_DN10695_c0_g1	171	191	182	-26.60	-18.60	0.699248120300752	5	2-18,190-174	1-1,191-191[UP5];19-21,173-171[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAUAAAUAGAAAAGUAGAAGC&UCUUCUAUUUUUCUAUUUUCC	2	0.999870104595326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN10695_c0_g1_182_TPlot.pdf
TRINITY_DN10695_c0_g1:186	si_a782	TRINITY_DN10695_c0_g1	175	195	186	-26.40	-17.90	0.678030303030303	10	6-21,190-175	1-5,195-191[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUAGAAAAGUAGAAGCUAUA&CAACUCUUCUAUUUUUCUAUU	4	0.99999948044527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN10695_c0_g1_186_TPlot.pdf
TRINITY_DN10695_c0_g1:2915	si_a788	TRINITY_DN10695_c0_g1	2904	2924	2915	-24.80	-16.30	0.657258064516129	6	1-16,2924-2909	17-21,2908-2904[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAAUAAAUAGAAAAGUAGAA&UUCUAUUUUUCUAUUUUCCAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN10695_c0_g1_2915_TPlot.pdf
TRINITY_DN10695_c0_g1:2916	si_a787	TRINITY_DN10695_c0_g1	2905	2925	2916	-26.30	-18.60	0.707224334600761	5	1-17,2925-2909	18-21,2908-2905[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAAUAAAUAGAAAAGUAGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.999998517350522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN10695_c0_g1_2916_TPlot.pdf
TRINITY_DN10695_c0_g1:2919	si_a784	TRINITY_DN10695_c0_g1	2908	2928	2919	-24.70	-18.60	0.753036437246964	7	4-20,2925-2909	1-3,2928-2926[UP5];21-21,2908-2908[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAAUAGAAAAGUAGAAGCUA&ACUCUUCUAUUUUUCUAUUUU	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10695_c0_g1_2919_TPlot.pdf
TRINITY_DN10698_c0_g1:943	si_a637	TRINITY_DN10698_c0_g1	932	952	943	-25.80	-18.10	0.701550387596899	7	1-8,952-945;10-18,943-935	9-9,944-944[SIL];19-21,934-932[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GUUUUACUCAAAUAAAUUGGC&GUCGAUUUUUUUGAGUAAUAU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN10698_c0_g1_943_TPlot.pdf
TRINITY_DN106_c0_g1:1225	si_a636	TRINITY_DN106_c0_g1	1213	1234	1225	-26.30	-20.30	0.771863117870722	6	1-15,1234-1220;16-18,1218-1216	x-x,1219-1219[BULt];19-21,1215-1213[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	AAAUACUUCAAGAAAAUCGGCA&UGUCGAUUUUUUUGA-GUAAUA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN106_c0_g1_1225_TPlot.pdf
TRINITY_DN106_c0_g1:1226	si_a635	TRINITY_DN106_c0_g1	1214	1235	1226	-26.10	-20.30	0.777777777777778	6	2-16,1234-1220;17-19,1218-1216	1-1,1235-1235[UP5];x-x,1219-1219[BULt];20-21,1215-1214[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	AAUACUUCAAGAAAAUCGGCAA&AUGUCGAUUUUUUUGA-GUAAU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN106_c0_g1_1226_TPlot.pdf
TRINITY_DN106_c0_g1:1228	si_a633	TRINITY_DN106_c0_g1	1216	1237	1228	-26.40	-20.10	0.761363636363636	7.5	4-18,1234-1220;19-21,1218-1216	1-3,1237-1235[UP5];x-x,1219-1219[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	UACUUCAAGAAAAUCGGCAACU&UUAUGUCGAUUUUUUUGA-GUA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN106_c0_g1_1228_TPlot.pdf
TRINITY_DN106_c0_g1:1229	si_a632	TRINITY_DN106_c0_g1	1218	1238	1229	-26.10	-19.10	0.731800766283525	10	5-20,1234-1219	1-4,1238-1235[UP5];21-21,1218-1218[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUUCAAGAAAAUCGGCAACUG&AUUAUGUCGAUUUUUUUGAGU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN106_c0_g1_1229_TPlot.pdf
TRINITY_DN106_c0_g1:1232	si_a629	TRINITY_DN106_c0_g1	1221	1240	1232	-26.30	-18.60	0.707224334600761	8.5	1-4,1240-1237;8-21,1234-1221	5-7,1236-1235[AILq]	((((((((((((((..-((((&))))...))))))))))))))	CAAGAAAAUCGGCAAC-UGCG&CGUAUUAUGUCGAUUUUUUUG	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN106_c0_g1_1232_TPlot.pdf
TRINITY_DN106_c0_g1:1234	si_a627	TRINITY_DN106_c0_g1	1223	1242	1234	-29.50	-20.00	0.677966101694915	9.5	1-6,1242-1237;10-21,1234-1223	7-9,1236-1235[AILq]	((((((((((((..-((((((&))))))...))))))))))))	AGAAAAUCGGCAAC-UGCGUC&GGCGUAUUAUGUCGAUUUUUU	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN106_c0_g1_1234_TPlot.pdf
TRINITY_DN106_c0_g1:1492	si_a802	TRINITY_DN106_c0_g1	1481	1501	1492	-34.70	-23.80	0.685878962536023	9.5	3-16,1499-1486	1-2,1501-1500[UP5];17-21,1485-1481[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACAGCUGCUUCGGAUUGGGCU&UUUCCAAUCCGAAGCGAAGAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN106_c0_g1_1492_TPlot.pdf
TRINITY_DN106_c0_g1:2957	si_a147	TRINITY_DN106_c0_g1	2946	2966	2957	-30.40	-20.50	0.674342105263158	6.5	1-6,2966-2961;8-11,2959-2956;13-20,2954-2947	7-7,2960-2960[SIL];12-12,2955-2955[SIL];21-21,2946-2946[UP3]	.((((((((.((((.((((((&)))))).)))).)))))))).	AGAUCUUGGUACAAGAACGAU&AUCGUUGUUGUUUUAAGGUCA	2	0.998291993200065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN106_c0_g1_2957_TPlot.pdf
TRINITY_DN106_c0_g1:2958	si_a146	TRINITY_DN106_c0_g1	2947	2967	2958	-29.70	-20.20	0.68013468013468	5.5	2-7,2966-2961;9-12,2959-2956;14-21,2954-2947	1-1,2967-2967[UP5];8-8,2960-2960[SIL];13-13,2955-2955[SIL]	((((((((.((((.((((((.&.)))))).)))).))))))))	GAUCUUGGUACAAGAACGAUC&AAUCGUUGUUGUUUUAAGGUC	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN106_c0_g1_2958_TPlot.pdf
TRINITY_DN106_c0_g1:367	si_a790	TRINITY_DN106_c0_g1	353	376	367	-25.80	-16.80	0.651162790697674	13	1-11,376-366;12-18,362-356	x-x,365-363[BULt];19-21,355-353[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	GCCUGGGAGAACAUGGAGAAAUGG&CUAUUUUUCUA---UUUUCCAAUC	3	0.999999998176299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN106_c0_g1_367_TPlot.pdf
TRINITY_DN106_c0_g1:369	si_a552	TRINITY_DN106_c0_g1	355	378	369	-33.10	-22.80	0.688821752265861	8	1-13,378-366;14-19,362-357	x-x,365-363[BULt];20-21,356-355[UP3]	..((((((...(((((((((((((&)))))))))))))---))))))..	CUGGGAGAACAUGGAGAAAUGGAU&AUCUAUUUCUUUA---UCUCCCCG	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN106_c0_g1_369_TPlot.pdf
TRINITY_DN106_c0_g1:371	si_a550	TRINITY_DN106_c0_g1	357	380	371	-30.90	-23.00	0.744336569579288	8	3-15,378-366;16-21,362-357	1-2,380-379[UP5];x-x,365-363[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	GGGAGAACAUGGAGAAAUGGAUCA&CAAUCUAUUUCUUUA---UCUCCC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN106_c0_g1_371_TPlot.pdf
TRINITY_DN106_c0_g1:372	si_a549	TRINITY_DN106_c0_g1	358	381	372	-29.50	-19.90	0.674576271186441	10	4-16,378-366;17-21,362-358	1-3,381-379[UP5];x-x,365-363[BULt]	(((((...(((((((((((((...&...)))))))))))))---)))))	GGAGAACAUGGAGAAAUGGAUCAU&UCAAUCUAUUUCUUUA---UCUCC	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN106_c0_g1_372_TPlot.pdf
TRINITY_DN106_c0_g1:76	si_s801	TRINITY_DN106_c0_g1	61	85	76	-28.20	-22.30	0.790780141843972	12.5	1-11,85-75;12-19,70-63	x-x,74-71[BULt];20-21,62-61[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	GUGGUAGCGAGGAAAGAUGAAGUAC&GUAUUUUAUCU----UCGUUACCUU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN106_c0_g1_76_TPlot.pdf
TRINITY_DN106_c0_g1:79	si_s798	TRINITY_DN106_c0_g1	64	88	79	-29.30	-19.10	0.651877133105802	11.5	4-14,85-75;15-21,70-64	1-3,88-86[UP5];x-x,74-71[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	GUAGCGAGGAAAGAUGAAGUACCUC&CUCGUAUUUUAUCU----UCGUUAC	4	0.999990652142784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN106_c0_g1_79_TPlot.pdf
TRINITY_DN10702_c0_g1:1090	si_s482	TRINITY_DN10702_c0_g1	1079	1099	1090	-21.20	-15.00	0.707547169811321	9	2-15,1098-1085	1-1,1099-1099[UP5];16-21,1084-1079[UP3]	......((((((((((((((.&.))))))))))))))......	GAAAGGAAAUGAAUAUGGGAC&AUCCUAUAUUUAUUUAAAUAU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN10702_c0_g1_1090_TPlot.pdf
TRINITY_DN10702_c0_g1:2177	si_s601	TRINITY_DN10702_c0_g1	2165	2186	2177	-28.30	-19.90	0.703180212014134	6.5	1-10,2186-2177;11-14,2175-2172;17-20,2169-2166	x-x,2176-2176[BULt];15-16,2171-2170[SIL];21-21,2165-2165[UP3]	.((((..((((.((((((((((&))))))))))-))))..)))).	GUGAAUCAGGUAUCGCUUGGAU&AUCCAAGCGA-AUCUUUUUUAA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN10702_c0_g1_2177_TPlot.pdf
TRINITY_DN10702_c0_g1:2178	si_s600	TRINITY_DN10702_c0_g1	2166	2187	2178	-28.20	-19.90	0.705673758865248	6	2-11,2186-2177;12-15,2175-2172;18-21,2169-2166	1-1,2187-2187[UP5];x-x,2176-2176[BULt];16-17,2171-2170[SIL]	((((..((((.((((((((((.&.))))))))))-))))..))))	UGAAUCAGGUAUCGCUUGGAUC&AAUCCAAGCGA-AUCUUUUUUA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN10702_c0_g1_2178_TPlot.pdf
TRINITY_DN10702_c0_g1:2180	si_s598	TRINITY_DN10702_c0_g1	2168	2189	2180	-28.20	-18.40	0.652482269503546	10.5	4-13,2186-2177;14-17,2175-2172	1-3,2189-2187[UP5];x-x,2176-2176[BULt];18-21,2171-2168[UP3]	....((((.((((((((((...&...))))))))))-))))....	AAUCAGGUAUCGCUUGGAUCGU&UAAAUCCAAGCGA-AUCUUUUU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN10702_c0_g1_2180_TPlot.pdf
TRINITY_DN10705_c1_g1:1250	si_s895	TRINITY_DN10705_c1_g1	1239	1259	1250	-31.10	-21.90	0.704180064308682	5.5	2-15,1258-1245;18-21,1242-1239	1-1,1259-1259[UP5];16-17,1244-1243[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	GAAAAAGAGGAGAAAGUCUGA&AUAGGCUUUCUCUUCAAUUUC	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN10705_c1_g1_1250_TPlot.pdf
TRINITY_DN10705_c1_g1:1467	si_a285	TRINITY_DN10705_c1_g1	1456	1475	1467	-28.30	-18.80	0.664310954063604	9.5	2-9,1474-1467;11-15,1466-1462	1-1,1475-1475[UP5];10-10,x-x[BULq];16-21,1461-1456[UP3]	......(((((-((((((((.&.)))))))).)))))......	AUUCUUGAUCC-AGCGAUCUG&AAGAUCGCUUGGAUUUAAAAA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN10705_c1_g1_1467_TPlot.pdf
TRINITY_DN10705_c1_g1:1517	si_s489	TRINITY_DN10705_c1_g1	1505	1526	1517	-17.90	-12.80	0.715083798882682	4	1-14,1526-1513;16-19,1510-1507	15-15,1512-1511[AILt];20-21,1506-1505[UP3]	..((((..((((((((((((((&))))))))))))))-.))))..	UAUGUUGAAUAUUUAAAUAAAU&AUUUAUUUAAAUAU-AAACAAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN10705_c1_g1_1517_TPlot.pdf
TRINITY_DN10705_c1_g1:1518	si_s488	TRINITY_DN10705_c1_g1	1506	1527	1518	-18.30	-13.30	0.726775956284153	3.5	1-15,1527-1513;17-20,1510-1507	16-16,1512-1511[AILt];21-21,1506-1506[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	AUGUUGAAUAUUUAAAUAAAUG&UAUUUAUUUAAAUAU-AAACAA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN10705_c1_g1_1518_TPlot.pdf
TRINITY_DN10705_c1_g1:1519	si_s487	TRINITY_DN10705_c1_g1	1507	1528	1519	-18.40	-13.10	0.71195652173913	4	2-16,1527-1513;18-21,1510-1507	1-1,1528-1528[UP5];17-17,1512-1511[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	UGUUGAAUAUUUAAAUAAAUGA&AUAUUUAUUUAAAUAU-AAACA	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN10705_c1_g1_1519_TPlot.pdf
TRINITY_DN1070_c0_g1:478	si_a461	TRINITY_DN1070_c0_g1	468	487	478	-21.50	-14.60	0.67906976744186	11	2-11,486-477;13-18,476-471	1-1,487-487[UP5];12-12,x-x[BULq];19-21,470-468[UP3]	...((((((-((((((((((.&.)))))))))).))))))...	CUCUGCAUG-UGUGUGUGACU&UGUUAUAUAUAAUAUGUAAUU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN1070_c0_g1_478_TPlot.pdf
TRINITY_DN10712_c1_g1:415	si_s435	TRINITY_DN10712_c1_g1	405	424	415	-20.90	-15.90	0.760765550239235	3	1-14,424-411;16-19,410-407	15-15,x-x[BULq];20-21,406-405[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	AAAUAU-AUAUGUAAUUAUUG&CAAUAAUUACAUAUUAUAUAU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN10712_c1_g1_415_TPlot.pdf
TRINITY_DN10719_c0_g1:1091	si_s70	TRINITY_DN10719_c0_g1	1080	1099	1091	-25.80	-18.20	0.705426356589147	5.5	1-6,1099-1094;8-14,1093-1087;16-21,1085-1080	7-7,x-x[BULq];15-15,1086-1086[SIL]	((((((.(((((((-((((((&)))))).))))))).))))))	GGAAAGUGAAAGAA-GGAAGU&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999939736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10719_c0_g1_1091_TPlot.pdf
TRINITY_DN10725_c0_g1:1672	si_a4	TRINITY_DN10725_c0_g1	1661	1681	1672	-31.60	-21.90	0.693037974683544	4	1-11,1681-1671;13-21,1669-1661	12-12,1670-1670[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	UAGGUUUUUGCUUCAAUUUUA&UGAAAUUGAAGAGAAAGCCUA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN10725_c0_g1_1672_TPlot.pdf
TRINITY_DN10725_c0_g1:4054	si_s870	TRINITY_DN10725_c0_g1	4043	4064	4054	-32.70	-21.70	0.663608562691131	8	1-5,4064-4060;6-12,4058-4052;14-17,4050-4047	x-x,4059-4059[BULt];13-13,4051-4051[SIL];18-21,4046-4043[UP3]	....((((.(((((((.(((((&)))))-))))))).))))....	AGCCAGUUGUAAGGCCUGGUAG&CUACC-GGUCUUAGAACUAAAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s870_TRINITY_DN10725_c0_g1_4054_TPlot.pdf
TRINITY_DN10728_c0_g1:367	si_a550	TRINITY_DN10728_c0_g1	352	376	367	-30.90	-22.20	0.718446601941748	12.5	1-6,376-371;8-12,369-365;13-21,360-352	7-7,370-370[SIL];x-x,364-361[BULt]	(((((((((....(((((.((((((&)))))).)))))----)))))))))	GGGAGAUGAAUAAAGAAGGGGAUUG&CAAUCUAUUUCU----UUAUCUCCC	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN10728_c0_g1_367_TPlot.pdf
TRINITY_DN10728_c0_g1:563	si_s51	TRINITY_DN10728_c0_g1	552	572	563	-30.70	-21.20	0.690553745928339	4	1-6,572-567;8-21,565-552	7-7,566-566[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	GUUGCUAGUUUGAAUUCUAAU&AUUGGAUUUCAAGUUAGCAAC	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN10728_c0_g1_563_TPlot.pdf
TRINITY_DN10728_c0_g1:852	si_s311	TRINITY_DN10728_c0_g1	840	861	852	-30.60	-21.50	0.702614379084967	9	5-15,857-847;16-20,845-841	1-4,861-858[UP5];x-x,846-846[BULt];21-21,840-840[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	UACAAGUAAGGACAGAAUCGUU&GAAAAUUCUGUCCUU-CUUGUU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN10728_c0_g1_852_TPlot.pdf
TRINITY_DN10728_c0_g1:854	si_s309	TRINITY_DN10728_c0_g1	842	863	854	-33.80	-23.60	0.698224852071006	6.5	1-4,863-860;7-17,857-847;18-21,845-842	5-6,859-858[SIL];x-x,846-846[BULt]	((((.(((((((((((..((((&))))..)))))))))))-))))	CAAGUAAGGACAGAAUCGUUGU&GCGAAAAUUCUGUCCUU-CUUG	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN10728_c0_g1_854_TPlot.pdf
TRINITY_DN10728_c0_g1:907	si_a843	TRINITY_DN10728_c0_g1	896	915	907	-29.30	-19.30	0.658703071672355	6.5	1-8,915-908;10-11,907-906;13-19,904-898	9-9,x-x[BULq];12-12,905-905[SIL];20-21,897-896[UP3]	..(((((((.((-((((((((&)))))))).)).)))))))..	UCUCGAGUUUGC-ACUUCUAU&AUAGAAGUUGCUAACUUGAAA	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a843_TRINITY_DN10728_c0_g1_907_TPlot.pdf
TRINITY_DN10730_c0_g1:14	si_s67	TRINITY_DN10730_c0_g1	3	22	14	-25.60	-16.70	0.65234375	9	1-2,22-21;4-6,19-17;8-21,16-3	3-3,20-20[SIL];7-7,x-x[BULq]	((((((((((((((-(((.((&)).))).))))))))))))))	GAGAGGGAAAGUGG-GGUGGC&GCAACUUCUAUUUUUUUUCUU	2	0.999999999200367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN10730_c0_g1_14_TPlot.pdf
TRINITY_DN10730_c0_g1:54	si_a256	TRINITY_DN10730_c0_g1	40	63	54	-37.20	-26.98	0.725268817204301	11	1-12,63-52;13-16,48-45;20-21,41-40	x-x,51-49[BULt];17-19,44-42[SIL]	((...((((...((((((((((((&))))))))))))---))))...))	CGGUGGCCCGUCUCGAUGCAGUCG&CGAUUGUAUCGA---GGGCAAACG	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a256_TRINITY_DN10730_c0_g1_54_TPlot.pdf
TRINITY_DN10730_c0_g1:55	si_a255	TRINITY_DN10730_c0_g1	41	64	55	-38.10	-25.80	0.677165354330709	10	2-13,63-52;14-17,48-45	1-1,64-64[UP5];x-x,51-49[BULt];18-21,44-41[UP3]	....((((...((((((((((((.&.))))))))))))---))))....	GGUGGCCCGUCUCGAUGCAGUCGA&CCGAUUGUAUCGA---GGGCAAAC	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a255_TRINITY_DN10730_c0_g1_55_TPlot.pdf
TRINITY_DN10733_c1_g1:916	si_s237	TRINITY_DN10733_c1_g1	906	924	916	-31.40	-21.10	0.671974522292994	8	3-9,922-916;12-21,915-906	1-2,924-923[UP5];10-11,x-x[BULq]	((((((((((--(((((((..&..)))))))..))))))))))	GAAAUGCCUA--GAUUCUUAU&UAAGGAAUCAAUAGGCAUUUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s237_TRINITY_DN10733_c1_g1_916_TPlot.pdf
TRINITY_DN1073_c0_g1:1413	si_a503	TRINITY_DN1073_c0_g1	1402	1422	1413	-32.10	-21.20	0.660436137071651	6	2-4,1421-1419;6-20,1417-1403	1-1,1422-1422[UP5];5-5,1418-1418[SIL];21-21,1402-1402[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	GGUUUCAAGGAAGAUGUAAAU&UUUUUCGUCUUCCUUGGAAUG	3	0.999999995464925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1073_c0_g1_1413_TPlot.pdf
TRINITY_DN1073_c0_g1:1414	si_a502	TRINITY_DN1073_c0_g1	1403	1422	1414	-32.10	-21.50	0.669781931464174	6.5	1-4,1422-1419;7-21,1417-1403	5-6,1418-1418[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	GUUUCAAGGAAGAUGU-AAAU&GUUUUUCGUCUUCCUUGGAAU	3	0.999999999915938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1073_c0_g1_1414_TPlot.pdf
TRINITY_DN1073_c0_g1:517	si_s210	TRINITY_DN1073_c0_g1	506	526	517	-35.90	-24.40	0.67966573816156	5.5	2-16,525-511;19-20,508-507	1-1,526-526[UP5];17-18,510-509[SIL];21-21,506-506[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	GGGCAUUGAAUACAACUGGUU&UACCAGUUGUGUUCGAAACCG	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN1073_c0_g1_517_TPlot.pdf
TRINITY_DN1073_c0_g1:518	si_s209	TRINITY_DN1073_c0_g1	507	527	518	-36.20	-23.80	0.657458563535912	6.5	3-17,525-511;20-21,508-507	1-2,527-526[UP5];18-19,510-509[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	GGCAUUGAAUACAACUGGUUU&GUACCAGUUGUGUUCGAAACC	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN1073_c0_g1_518_TPlot.pdf
TRINITY_DN1073_c0_g1:521	si_s206	TRINITY_DN1073_c0_g1	510	530	521	-33.00	-21.70	0.657575757575758	11	6-20,525-511	1-5,530-526[UP5];21-21,510-510[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUUGAAUACAACUGGUUUUUC&AAUGUACCAGUUGUGUUCGAA	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN1073_c0_g1_521_TPlot.pdf
TRINITY_DN1073_c0_g1:522	si_s205	TRINITY_DN1073_c0_g1	511	530	522	-34.90	-22.80	0.653295128939828	7	1-3,530-528;7-21,525-511	4-6,527-526[AILq]	(((((((((((((((..-(((&)))...)))))))))))))))	UUGAAUACAACUGGUUU-UUC&GAAUGUACCAGUUGUGUUCGA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN1073_c0_g1_522_TPlot.pdf
TRINITY_DN10748_c0_g1:1501	si_s73	TRINITY_DN10748_c0_g1	1490	1510	1501	-24.00	-16.30	0.679166666666667	8.5	4-7,1507-1504;9-21,1502-1490	1-3,1510-1508[UP5];8-8,1503-1503[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AAAGGAGAGAAGAUAAAUUUU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN10748_c0_g1_1501_TPlot.pdf
TRINITY_DN10749_c0_g1:3326	si_a758	TRINITY_DN10749_c0_g1	3314	3335	3326	-34.00	-24.32	0.715294117647059	7	1-14,3335-3322;18-21,3317-3314	15-17,3321-3318[AILt]	((((....((((((((((((((&))))))))))))))-...))))	CAGUAUGCGAGCUCAAAGGAGG&CCUCCUUUGGGUUU-UUGAUUG	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN10749_c0_g1_3326_TPlot.pdf
TRINITY_DN10749_c0_g1:3327	si_a757	TRINITY_DN10749_c0_g1	3316	3336	3327	-33.10	-22.70	0.685800604229607	9	2-15,3335-3322	1-1,3336-3336[UP5];16-21,3321-3316[UP3]	......((((((((((((((.&.))))))))))))))......	GUAUGCGAGCUCAAAGGAGGG&ACCUCCUUUGGGUUUUUGAUU	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN10749_c0_g1_3327_TPlot.pdf
TRINITY_DN10749_c0_g1:3328	si_a756	TRINITY_DN10749_c0_g1	3317	3337	3328	-33.10	-22.70	0.685800604229607	10	3-16,3335-3322	1-2,3337-3336[UP5];17-21,3321-3317[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUGCGAGCUCAAAGGAGGGC&AACCUCCUUUGGGUUUUUGAU	2	0.998565120328725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN10749_c0_g1_3328_TPlot.pdf
TRINITY_DN10749_c0_g1:3331	si_a753	TRINITY_DN10749_c0_g1	3320	3340	3331	-33.10	-22.70	0.685800604229607	12.5	6-19,3335-3322	1-5,3340-3336[UP5];20-21,3321-3320[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCGAGCUCAAAGGAGGGCAGG&AUGAACCUCCUUUGGGUUUUU	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN10749_c0_g1_3331_TPlot.pdf
TRINITY_DN10749_c0_g1:3388	si_a502	TRINITY_DN10749_c0_g1	3374	3397	3388	-32.10	-22.90	0.713395638629283	12.5	1-11,3397-3387;12-19,3383-3376	x-x,3386-3384[BULt];20-21,3375-3374[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	AAUUCAAGGAGGCAGGCGGAGAGC&GUUUUUCGUCU---UCCUUGGAAU	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN10749_c0_g1_3388_TPlot.pdf
TRINITY_DN10749_c0_g1:3390	si_a500	TRINITY_DN10749_c0_g1	3376	3399	3390	-34.40	-23.10	0.671511627906977	10.5	3-13,3397-3387;14-21,3383-3376	1-2,3399-3398[UP5];x-x,3386-3384[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	UUCAAGGAGGCAGGCGGAGAGCUG&UCGUUUUUCGUCU---UCCUUGGA	3	0.999999893314632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN10749_c0_g1_3390_TPlot.pdf
TRINITY_DN10749_c0_g1:4219	si_a63	TRINITY_DN10749_c0_g1	4209	4229	4219	-30.20	-21.30	0.705298013245033	7	2-7,4228-4223;8-14,4221-4215;17-21,4213-4209	1-1,4229-4229[UP5];x-x,4222-4222[BULt];15-16,4214-4214[AILq]	(((((.-(((((((.((((((.&.))))))-)))))))..)))))	GACAGG-UGAAAGAGGGCGAGG&ACUCGCU-UCUUUCAAAUUGUU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN10749_c0_g1_4219_TPlot.pdf
TRINITY_DN10749_c0_g1:742	si_s627	TRINITY_DN10749_c0_g1	729	750	742	-36.10	-23.90	0.662049861495845	6.5	2-5,749-746;7-13,745-739;14-17,737-734;18-21,732-729	1-1,750-750[UP5];6-6,x-x[BULq];x-x,738-738[BULt];x-x,733-733[BULt]	((((.((((.(((((((-((((.&.)))).)))))))-))))-))))	GACGCCCUACCGGAAAG-UCGCA&AGCGAUCUUUUCG-UAGG-CGUU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN10749_c0_g1_742_TPlot.pdf
TRINITY_DN1074_c0_g1:1602	si_s32	TRINITY_DN1074_c0_g1	1591	1611	1602	-24.80	-17.10	0.689516129032258	9	1-13,1611-1599	14-21,1598-1591[UP3]	........(((((((((((((&)))))))))))))........	CUAAGGUUAGGUUUAGUUGCA&UGCAACUAAAUCUUUAAUAAU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN1074_c0_g1_1602_TPlot.pdf
TRINITY_DN1074_c0_g1:313	si_a285	TRINITY_DN1074_c0_g1	302	322	313	-28.30	-18.50	0.653710247349823	8	1-5,322-318;7-16,316-307	6-6,317-317[SIL];17-21,306-302[UP3]	.....((((((((((.(((((&))))).)))))))))).....	GUUUAAAAUCCGAGCCAUCUU&AAGAUCGCUUGGAUUUAAAAA	3	0.999997278599856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN1074_c0_g1_313_TPlot.pdf
TRINITY_DN1074_c0_g1:318	si_a280	TRINITY_DN1074_c0_g1	307	327	318	-32.10	-21.00	0.654205607476635	4.5	1-2,327-326;4-10,324-318;12-21,316-307	3-3,325-325[SIL];11-11,317-317[SIL]	((((((((((.(((((((.((&)).))))))).))))))))))	AAAUCCGAGCCAUCUUUUAGU&ACGAAAAGAUCGCUUGGAUUU	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN1074_c0_g1_318_TPlot.pdf
TRINITY_DN10750_c0_g2:1665	si_a128	TRINITY_DN10750_c0_g2	1655	1674	1665	-23.20	-15.20	0.655172413793103	7	3-10,1672-1665;12-21,1664-1655	1-2,1674-1673[UP5];11-11,x-x[BULq]	((((((((((-((((((((..&..)))))))).))))))))))	GUUAGUUACU-UUGUUAUAUU&UUUAUAGCAAUAGUAAUUAAU	2	0.995490768745023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN10750_c0_g2_1665_TPlot.pdf
TRINITY_DN10750_c0_g3:75	si_a633	TRINITY_DN10750_c0_g3	63	84	75	-26.40	-20.80	0.787878787878788	7.5	3-10,82-75;11-21,73-63	1-2,84-83[UP5];x-x,74-74[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	UGCUCAAGGGAUAUCGACAUCC&UUAUGUCGAU-UUUUUUGAGUA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN10750_c0_g3_75_TPlot.pdf
TRINITY_DN10757_c0_g1:255	si_s216	TRINITY_DN10757_c0_g1	244	264	255	-35.80	-23.50	0.656424581005587	5.5	1-15,264-250;18-20,247-245	16-17,249-248[SIL];21-21,244-244[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	AUUAGCCGGUUUUGAACGCAA&UUGUGUUCGAAACCGCGUGAA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN10757_c0_g1_255_TPlot.pdf
TRINITY_DN1075_c0_g1:1347	si_a745	TRINITY_DN1075_c0_g1	1337	1361	1347	-42.00	-29.20	0.695238095238095	15.5	1-5,1361-1357;6-11,1351-1346;14-20,1344-1338	x-x,1356-1352[BULt];12-13,1345-1345[AILq];21-21,1337-1337[UP3]	.(((((((.-((((((.....(((((&)))))-----))))))..))))))).	CGAGGAGGG-CGUGGCAGAGGCAGGG&CCCUG-----GCCAUGAACCUCCUUU	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN1075_c0_g1_1347_TPlot.pdf
TRINITY_DN1075_c0_g1:1348	si_a744	TRINITY_DN1075_c0_g1	1338	1362	1348	-44.40	-31.60	0.711711711711712	13.5	1-6,1362-1357;7-12,1351-1346;15-21,1344-1338	x-x,1356-1352[BULt];13-14,1345-1345[AILq]	(((((((.-((((((.....((((((&))))))-----))))))..)))))))	GAGGAGGG-CGUGGCAGAGGCAGGGG&CCCCUG-----GCCAUGAACCUCCUU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a744_TRINITY_DN1075_c0_g1_1348_TPlot.pdf
TRINITY_DN1075_c0_g1:1350	si_a742	TRINITY_DN1075_c0_g1	1340	1364	1350	-44.90	-29.70	0.661469933184855	15.5	3-8,1362-1357;9-14,1351-1346;17-21,1344-1340	1-2,1364-1363[UP5];x-x,1356-1352[BULt];15-16,1345-1345[AILq]	(((((.-((((((.....((((((..&..))))))-----))))))..)))))	GGAGGG-CGUGGCAGAGGCAGGGGCG&UACCCCUG-----GCCAUGAACCUCC	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a742_TRINITY_DN1075_c0_g1_1350_TPlot.pdf
TRINITY_DN1075_c0_g1:1358	si_a498	TRINITY_DN1075_c0_g1	1337	1367	1358	-33.50	-22.00	0.656716417910448	27.5	2-10,1366-1358;11-21,1347-1337	1-1,1367-1367[UP5];x-x,1357-1348[BULt]	(((((((((((..........(((((((((.&.)))))))))----------)))))))))))	CGAGGAGGGCGUGGCAGAGGCAGGGGCGGCG&UGUCGUUUUU----------CGUCUUCCUUG	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1075_c0_g1_1358_TPlot.pdf
TRINITY_DN1075_c0_g1:2292	si_a784	TRINITY_DN1075_c0_g1	2281	2301	2292	-24.70	-16.80	0.680161943319838	9	1-4,2301-2298;6-16,2296-2286	5-5,2297-2297[SIL];17-21,2285-2281[UP3]	.....(((((((((((.((((&)))).))))))))))).....	AAUACAGAAGGAUAGAUGAGU&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1075_c0_g1_2292_TPlot.pdf
TRINITY_DN1075_c0_g1:3214	si_a131	TRINITY_DN1075_c0_g1	3203	3223	3214	-27.00	-18.60	0.688888888888889	7	1-6,3223-3218;8-20,3216-3204	7-7,3217-3217[SIL];21-21,3203-3203[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UUGAUUAGUUGCUGAUGUUAU&AUAGCAAUAGUAAUUAAUCGU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a131_TRINITY_DN1075_c0_g1_3214_TPlot.pdf
TRINITY_DN10762_c0_g1:1000	si_a327	TRINITY_DN10762_c0_g1	984	1009	1000	-28.40	-22.00	0.774647887323944	13	1-10,1009-1000;11-21,994-984	x-x,999-995[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	GGACAAGGAAUUAGACAAGAGAAUUA&UGAUUUUUUU-----AUUCCUUGUCC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN10762_c0_g1_1000_TPlot.pdf
TRINITY_DN10762_c0_g1:1001	si_a326	TRINITY_DN10762_c0_g1	985	1010	1001	-26.20	-18.60	0.709923664122137	14	2-11,1009-1000;12-21,994-985	1-1,1010-1010[UP5];x-x,999-995[BULt]	((((((((((.....((((((((((.&.))))))))))-----))))))))))	GACAAGGAAUUAGACAAGAGAAUUAG&AUGAUUUUUUU-----AUUCCUUGUC	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN10762_c0_g1_1001_TPlot.pdf
TRINITY_DN10762_c0_g1:1059	si_a629	TRINITY_DN10762_c0_g1	1048	1067	1059	-26.30	-17.42	0.662357414448669	10	1-3,1067-1065;8-20,1061-1049	4-7,1064-1062[AILq];21-21,1048-1048[UP3]	.(((((((((((((...-(((&)))....))))))))))))).	UGAAGAAAUCGACACUG-ACG&CGUAUUAUGUCGAUUUUUUUG	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN10762_c0_g1_1059_TPlot.pdf
TRINITY_DN10762_c0_g1:440	si_s124	TRINITY_DN10762_c0_g1	429	449	440	-27.10	-18.20	0.671586715867159	8.5	4-21,446-429	1-3,449-447[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUGAUUCAGUUCUUUUGUGAU&AAAAUAGAAGAGUUGAAUCAA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN10762_c0_g1_440_TPlot.pdf
TRINITY_DN1077_c0_g1:2021	si_a416	TRINITY_DN1077_c0_g1	2010	2030	2021	-20.50	-15.50	0.75609756097561	7.5	3-10,2028-2021;12-21,2019-2010	1-2,2030-2029[UP5];11-11,2020-2020[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	CCUGUAUUUAAUUAGGUAUUU&UUAUAUUUAAAUAAAUAUAGG	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN1077_c0_g1_2021_TPlot.pdf
TRINITY_DN1077_c0_g1:2022	si_a415	TRINITY_DN1077_c0_g1	2011	2031	2022	-18.10	-11.80	0.651933701657459	9.5	4-11,2028-2021;13-21,2019-2011	1-3,2031-2029[UP5];12-12,2020-2020[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	CUGUAUUUAAUUAGGUAUUUU&UUUAUAUUUAAAUAAAUAUAG	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN1077_c0_g1_2022_TPlot.pdf
TRINITY_DN10784_c0_g2:861	si_s90	TRINITY_DN10784_c0_g2	849	870	861	-35.30	-23.30	0.660056657223796	7.5	2-10,869-861;11-14,859-856;16-20,854-850	1-1,870-870[UP5];x-x,860-860[BULt];15-15,855-855[SIL];21-21,849-849[UP3]	.(((((.((((.(((((((((.&.)))))))))-)))).))))).	ACGAGGGGAAGCAAGAAGGAGU&CUUUCUUCUU-CUUCGCUUCGG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN10784_c0_g2_861_TPlot.pdf
TRINITY_DN10787_c0_g1:1162	si_s72	TRINITY_DN10787_c0_g1	1151	1171	1162	-24.10	-17.70	0.734439834024896	10	4-19,1168-1153	1-3,1171-1169[UP5];20-21,1152-1151[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCGGAAAGAAGGAAAAUGUAU&UUCUAUUUUUUUUCUUUCCUU	3	0.99999999997125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10787_c0_g1_1162_TPlot.pdf
TRINITY_DN10787_c0_g1:448	si_a190	TRINITY_DN10787_c0_g1	438	457	448	-32.00	-21.00	0.65625	6.5	3-12,455-446;15-15,443-443;17-21,442-438	1-2,457-456[UP5];13-14,445-444[SIL];16-16,x-x[BULq]	(((((-(..((((((((((..&..))))))))))..).)))))	AUUGG-GUUCAGGGAAAGAAC&UAUCUUUCCCUGUUCACUAAU	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN10787_c0_g1_448_TPlot.pdf
TRINITY_DN10789_c0_g1:22	si_s668	TRINITY_DN10789_c0_g1	11	31	22	-28.20	-18.40	0.652482269503546	7.5	1-16,31-16	17-21,15-11[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAAAUAUGAUCAAUUUGGUC&GAUCGAAUUGAUUAUAGAAAC	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s668_TRINITY_DN10789_c0_g1_22_TPlot.pdf
TRINITY_DN1078_c0_g1:1217	si_a402	TRINITY_DN1078_c0_g1	1206	1226	1217	-22.40	-15.90	0.709821428571429	9.5	2-8,1225-1219;11-19,1216-1208	1-1,1226-1226[UP5];9-10,1218-1217[SIL];20-21,1207-1206[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	CUUAUGAACGAUUCGAUUCUU&UAGAAUUGUUUUGUUUAUAUU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN1078_c0_g1_1217_TPlot.pdf
TRINITY_DN1078_c0_g1:1482	si_a67	TRINITY_DN1078_c0_g1	1471	1491	1482	-27.20	-22.10	0.8125	4.5	1-12,1491-1480;14-20,1478-1472	13-13,1479-1479[SIL];21-21,1471-1471[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AGAAGACGUUUUGGAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1078_c0_g1_1482_TPlot.pdf
TRINITY_DN1078_c0_g1:1485	si_a64	TRINITY_DN1078_c0_g1	1474	1494	1485	-29.40	-20.30	0.690476190476191	8	4-15,1491-1480;17-21,1478-1474	1-3,1494-1492[UP5];16-16,1479-1479[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	AGACGUUUUGGAAGAAGCUUG&CUCGCUUCUUUCAAAUUGUUU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN1078_c0_g1_1485_TPlot.pdf
TRINITY_DN10790_c0_g1:1198	si_a140	TRINITY_DN10790_c0_g1	1187	1205	1198	-25.20	-16.50	0.654761904761905	8.5	1-6,1205-1200;9-21,1199-1187	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	GGGACAACAAUGG--AAUUGC&GUAAUUAAUCGUUGUUGUUUU	4	0.999999998610957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN10790_c0_g1_1198_TPlot.pdf
TRINITY_DN10791_c1_g1:42	si_a63	TRINITY_DN10791_c1_g1	30	52	42	-30.20	-20.40	0.675496688741722	6	1-9,52-44;10-13,42-39;16-21,35-30	x-x,43-43[BULt];14-15,38-36[AILt]	((((((...((((.(((((((((&)))))))))-))))-..))))))	AACAAUCUAGAAAUGAGGCGAGU&ACUCGCUUC-UUUC-AAAUUGUU	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN10791_c1_g1_42_TPlot.pdf
TRINITY_DN10797_c0_g1:4635	si_s565	TRINITY_DN10797_c0_g1	4624	4644	4635	-31.10	-20.50	0.659163987138264	14	6-17,4639-4628	1-5,4644-4640[UP5];18-21,4627-4624[UP3]	....((((((((((((.....&.....))))))))))))....	AGGCUCCUUGUCUCGAUCAGC&UAUUUUCGGGACAAGGAAUAA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s565_TRINITY_DN10797_c0_g1_4635_TPlot.pdf
TRINITY_DN1079_c0_g1:1033	si_s812	TRINITY_DN1079_c0_g1	1022	1043	1033	-26.40	-18.70	0.708333333333333	8	1-4,1043-1040;5-15,1038-1028;18-21,1025-1022	x-x,1039-1039[BULt];16-17,1027-1026[SIL]	((((..(((((((((((.((((&))))-)))))))))))..))))	AUUAGCAAGAGAGGGUGCGCGA&UCGU-UACCUUUUCUUAAUAAU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN1079_c0_g1_1033_TPlot.pdf
TRINITY_DN1079_c0_g1:1036	si_s809	TRINITY_DN1079_c0_g1	1025	1046	1036	-28.50	-21.30	0.747368421052632	9	1-7,1046-1040;8-18,1038-1028	x-x,1039-1039[BULt];19-21,1027-1025[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	AGCAAGAGAGGGUGCGCGAAGG&UCUUCGU-UACCUUUUCUUAAU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1079_c0_g1_1036_TPlot.pdf
TRINITY_DN1079_c0_g1:1037	si_s808	TRINITY_DN1079_c0_g1	1026	1047	1037	-28.60	-22.90	0.800699300699301	8	1-8,1047-1040;9-19,1038-1028	x-x,1039-1039[BULt];20-21,1027-1026[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	GCAAGAGAGGGUGCGCGAAGGU&AUCUUCGU-UACCUUUUCUUAA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1079_c0_g1_1037_TPlot.pdf
TRINITY_DN107_c0_g1:1597	si_a15	TRINITY_DN107_c0_g1	1586	1605	1597	-26.20	-17.90	0.683206106870229	7	1-4,1605-1602;6-8,1601-1599;10-21,1597-1586	5-5,x-x[BULq];9-9,1598-1598[SIL]	((((((((((((.(((-((((&)))).))).))))))))))))	CUAGAAGUAGGUCGGC-UUCU&AGAAAGCCUAUUUAUUUUUAG	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN107_c0_g1_1597_TPlot.pdf
TRINITY_DN107_c0_g1:1719	si_a794	TRINITY_DN107_c0_g1	1704	1728	1719	-28.60	-19.86	0.694405594405594	7	1-13,1728-1716;16-20,1709-1705	14-15,1715-1710[AILt];21-21,1704-1704[UP3]	.(((((......(((((((((((((&)))))))))))))----..))))).	GUCGGAAUCCCCGGAAAAUAGAAAA&UUUUCUAUUUUCC----AAUCCGAA	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN107_c0_g1_1719_TPlot.pdf
TRINITY_DN107_c0_g1:1720	si_a793	TRINITY_DN107_c0_g1	1705	1729	1720	-28.50	-20.56	0.72140350877193	6	1-14,1729-1716;17-21,1709-1705	15-16,1715-1710[AILt]	(((((......((((((((((((((&))))))))))))))----..)))))	UCGGAAUCCCCGGAAAAUAGAAAAA&UUUUUCUAUUUUCC----AAUCCGA	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN107_c0_g1_1720_TPlot.pdf
TRINITY_DN107_c0_g1:1721	si_a792	TRINITY_DN107_c0_g1	1706	1730	1721	-27.60	-18.56	0.672463768115942	7	2-15,1729-1716;18-21,1709-1706	1-1,1730-1730[UP5];16-17,1715-1710[AILt]	((((......((((((((((((((.&.))))))))))))))----..))))	CGGAAUCCCCGGAAAAUAGAAAAAG&AUUUUUCUAUUUUCC----AAUCCG	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN107_c0_g1_1721_TPlot.pdf
TRINITY_DN107_c0_g1:1726	si_a787	TRINITY_DN107_c0_g1	1715	1733	1726	-26.30	-17.50	0.665399239543726	6	2-5,1732-1729;8-20,1728-1716	1-1,1733-1733[UP5];6-7,x-x[BULq];21-21,1715-1715[UP3]	.(((((((((((((--((((.&.))))..))))))))))))).	CGGAAAAUAGAAAA--AGAAA&CUUCUAUUUUUCUAUUUUCCA	2	0.99999999648342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN107_c0_g1_1726_TPlot.pdf
TRINITY_DN107_c0_g1:2078	si_s76	TRINITY_DN107_c0_g1	2067	2087	2078	-23.60	-18.30	0.775423728813559	11.5	4-6,2084-2082;9-21,2079-2067	1-3,2087-2085[UP5];7-8,2081-2080[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	GAGAAAGGAGAGAUCAGACUC&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999976683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN107_c0_g1_2078_TPlot.pdf
TRINITY_DN107_c0_g1:367	si_a325	TRINITY_DN107_c0_g1	356	376	367	-25.90	-18.34	0.708108108108108	11	1-8,376-369;14-21,363-356	9-13,368-364[SIL]	((((((((.....((((((((&)))))))).....))))))))	ACAAGGAAAUUCUGGAUCAUG&CAUGAUUUUUUUAUUCCUUGU	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN107_c0_g1_367_TPlot.pdf
TRINITY_DN107_c0_g1:797	si_s76	TRINITY_DN107_c0_g1	786	806	797	-23.60	-15.40	0.652542372881356	11	3-15,804-792	1-2,806-805[UP5];16-21,791-786[UP3]	......(((((((((((((..&..)))))))))))))......	GACUCCGGAAAGAGAAGAAGA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN107_c0_g1_797_TPlot.pdf
TRINITY_DN107_c0_g1:820	si_s798	TRINITY_DN107_c0_g1	809	828	820	-29.30	-19.50	0.665529010238908	6.5	1-5,828-824;7-13,823-817;15-20,815-810	6-6,x-x[BULq];14-14,816-816[SIL];21-21,809-809[UP3]	.((((((.(((((((-(((((&))))).))))))).)))))).	AUGACGAUGAUGAAG-ACGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN107_c0_g1_820_TPlot.pdf
TRINITY_DN107_c0_g1:821	si_s797	TRINITY_DN107_c0_g1	810	829	821	-30.00	-19.70	0.656666666666667	6.5	2-6,828-824;8-14,823-817;16-21,815-810	1-1,829-829[UP5];7-7,x-x[BULq];15-15,816-816[SIL]	((((((.(((((((-(((((.&.))))).))))))).))))))	UGACGAUGAUGAAG-ACGAGA&GCUCGUAUUUUAUCUUCGUUA	3	0.9999999945586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN107_c0_g1_821_TPlot.pdf
TRINITY_DN107_c0_g1:831	si_a494	TRINITY_DN107_c0_g1	820	839	831	-29.50	-20.50	0.694915254237288	9.5	5-8,835-832;10-21,831-820	1-4,839-836[UP5];9-9,x-x[BULq]	((((((((((((-((((....&....)))).))))))))))))	GAAGACGAGAAA-GACAAAGA&AAUAUGUCGUUUUUCGUCUUC	3	0.999995920298892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN107_c0_g1_831_TPlot.pdf
TRINITY_DN107_c0_g1:905	si_s72	TRINITY_DN107_c0_g1	894	914	905	-24.10	-16.00	0.663900414937759	7	1-4,914-911;6-18,909-897	5-5,910-910[SIL];19-21,896-894[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AUCGAAAGAGAAGAAAAAGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN107_c0_g1_905_TPlot.pdf
TRINITY_DN107_c0_g1:906	si_s76	TRINITY_DN107_c0_g1	895	915	906	-23.60	-15.80	0.669491525423729	5.5	2-13,914-903;15-19,901-897	1-1,915-915[UP5];14-14,902-902[SIL];20-21,896-895[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	UCGAAAGAGAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN107_c0_g1_906_TPlot.pdf
TRINITY_DN107_c0_g1:907	si_s75	TRINITY_DN107_c0_g1	896	916	907	-24.00	-15.80	0.658333333333333	6.5	3-14,914-903;16-20,901-897	1-2,916-915[UP5];15-15,902-902[SIL];21-21,896-896[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	CGAAAGAGAAGAAAAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN107_c0_g1_907_TPlot.pdf
TRINITY_DN107_c0_g1:908	si_s69	TRINITY_DN107_c0_g1	897	917	908	-23.40	-16.20	0.692307692307692	8.5	4-7,914-911;9-21,909-897	1-3,917-915[UP5];8-8,910-910[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAGAAGAAAAAGAAAAA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN107_c0_g1_908_TPlot.pdf
TRINITY_DN107_c0_g1:914	si_s68	TRINITY_DN107_c0_g1	903	924	914	-23.10	-15.20	0.658008658008658	8.5	3-8,922-917;10-21,914-903	1-2,924-923[UP5];9-9,916-915[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GAAGAAAAAGAAAAAGAAGUCC&CAACUUCU-AUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN107_c0_g1_914_TPlot.pdf
TRINITY_DN10804_c0_g1:1590	si_a113	TRINITY_DN10804_c0_g1	1579	1599	1590	-26.20	-17.40	0.66412213740458	16	8-20,1592-1580	1-7,1599-1593[UP5];21-21,1579-1579[UP3]	.(((((((((((((.......&.......))))))))))))).	CAUGAAGCAGGCUCCAAUGAU&AAAAUACGAGCUUGUUUUAUA	3	0.999996002057448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN10804_c0_g1_1590_TPlot.pdf
TRINITY_DN10804_c0_g1:1999	si_a410	TRINITY_DN10804_c0_g1	1988	2008	1999	-17.80	-12.50	0.702247191011236	7.5	1-12,2008-1997;14-18,1995-1991	13-13,1996-1996[SIL];19-21,1990-1988[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UCAGUUUACAUAUGAACAGGA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN10804_c0_g1_1999_TPlot.pdf
TRINITY_DN10804_c0_g1:2000	si_a409	TRINITY_DN10804_c0_g1	1989	2009	2000	-19.50	-14.10	0.723076923076923	7	1-13,2009-1997;15-19,1995-1991	14-14,1996-1996[SIL];20-21,1990-1989[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	CAGUUUACAUAUGAACAGGAU&GUUUUGUUUAUAUUUAAAUAA	3	0.999930580745155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN10804_c0_g1_2000_TPlot.pdf
TRINITY_DN10804_c0_g1:2001	si_a408	TRINITY_DN10804_c0_g1	1990	2010	2001	-20.10	-14.90	0.741293532338308	6.5	1-14,2010-1997;16-20,1995-1991	15-15,1996-1996[SIL];21-21,1990-1990[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AGUUUACAUAUGAACAGGAUA&UGUUUUGUUUAUAUUUAAAUA	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN10804_c0_g1_2001_TPlot.pdf
TRINITY_DN10805_c1_g1:288	si_a149	TRINITY_DN10805_c1_g1	277	298	288	-29.40	-19.60	0.666666666666667	9	1-4,298-295;5-6,293-292;8-19,290-279	x-x,294-294[BULt];7-7,291-291[SIL];20-21,278-277[UP3]	..((((((((((((.((.((((&))))-)).))))))))))))..	UAUGACCUUGAAAUUGCGAACG&CGUU-GUUGUUUUAAGGUCAAU	2	0.999858280097927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN10805_c1_g1_288_TPlot.pdf
TRINITY_DN10807_c0_g1:283	si_s44	TRINITY_DN10807_c0_g1	271	292	283	-24.70	-17.20	0.696356275303644	10	6-13,287-280;14-21,278-271	1-5,292-288[UP5];x-x,279-279[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	ACUUGAAAUUCCAAUUAACCAA&UUUAAUAAUUGGA-UUUCAAGU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN10807_c0_g1_283_TPlot.pdf
TRINITY_DN10807_c0_g1:377	si_a798	TRINITY_DN10807_c0_g1	366	387	377	-34.10	-23.00	0.674486803519062	10.5	4-8,384-380;9-20,378-367	1-3,387-385[UP5];x-x,379-379[BULt];21-21,366-366[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	GCGCUUUGGAUUGUGGAGAAGU&CUAUUUUC-CAAUCCGAAGCGA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN10807_c0_g1_377_TPlot.pdf
TRINITY_DN1080_c0_g1:1684	si_a498	TRINITY_DN1080_c0_g1	1673	1696	1684	-33.50	-21.92	0.654328358208955	14.5	1-9,1696-1688;12-21,1682-1673	10-11,1687-1683[AILt]	((((((((((.....(((((((((&)))))))))---..))))))))))	CGAGGAAGAUAGCCCAAGGCGGCA&UGUCGUUUU---UCGUCUUCCUUG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1080_c0_g1_1684_TPlot.pdf
TRINITY_DN1080_c0_g1:219	si_a411	TRINITY_DN1080_c0_g1	208	228	219	-17.90	-13.20	0.737430167597765	9	1-15,228-214	16-21,213-208[UP3]	......(((((((((((((((&)))))))))))))))......	GCUAAAUUAGAUGUAAACAGA&UUUGUUUAUAUUUAAAUAAAU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1080_c0_g1_219_TPlot.pdf
TRINITY_DN1080_c0_g1:221	si_a409	TRINITY_DN1080_c0_g1	210	230	221	-19.50	-13.30	0.682051282051282	9.5	3-17,228-214	1-2,230-229[UP5];18-21,213-210[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAAAUUAGAUGUAAACAGACG&GUUUUGUUUAUAUUUAAAUAA	2	0.999996395299518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1080_c0_g1_221_TPlot.pdf
TRINITY_DN1080_c0_g1:222	si_a408	TRINITY_DN1080_c0_g1	211	231	222	-20.10	-13.30	0.661691542288557	10.5	4-18,228-214	1-3,231-229[UP5];19-21,213-211[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAUUAGAUGUAAACAGACGU&UGUUUUGUUUAUAUUUAAAUA	2	0.999999992486479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN1080_c0_g1_222_TPlot.pdf
TRINITY_DN1080_c0_g1:223	si_a407	TRINITY_DN1080_c0_g1	212	232	223	-19.80	-13.30	0.671717171717172	11	5-19,228-214	1-4,232-229[UP5];20-21,213-212[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAUUAGAUGUAAACAGACGUG&UUGUUUUGUUUAUAUUUAAAU	2	0.999999999958136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1080_c0_g1_223_TPlot.pdf
TRINITY_DN10810_c0_g1:1718	si_a80	TRINITY_DN10810_c0_g1	1708	1727	1718	-22.10	-14.40	0.65158371040724	7.5	2-15,1726-1713;17-19,1712-1710	1-1,1727-1727[UP5];16-16,x-x[BULq];20-21,1709-1708[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	GGUUC-UAGUGAUGAAAGAUG&UGUUUUUCAUUAUUAAGAAAA	3	0.999999948524549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN10810_c0_g1_1718_TPlot.pdf
TRINITY_DN10810_c0_g1:590	si_a454	TRINITY_DN10810_c0_g1	579	599	590	-21.30	-14.60	0.685446009389671	10.5	4-5,596-595;7-20,593-580	1-3,599-597[UP5];6-6,594-594[SIL];21-21,579-579[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	AAUUGUAUAUAGCAGGAAAAU&UAAUUGUUGUUAUAUAUAAUA	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN10810_c0_g1_590_TPlot.pdf
TRINITY_DN10810_c0_g1:591	si_a453	TRINITY_DN10810_c0_g1	580	600	591	-21.10	-14.30	0.677725118483412	11.5	5-6,596-595;8-21,593-580	1-4,600-597[UP5];7-7,594-594[SIL]	((((((((((((((.((....&....)).))))))))))))))	AUUGUAUAUAGCAGGAAAAUC&AUAAUUGUUGUUAUAUAUAAU	3	0.999997333137613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN10810_c0_g1_591_TPlot.pdf
TRINITY_DN10810_c0_g1:91	si_a479	TRINITY_DN10810_c0_g1	80	100	91	-23.00	-15.46	0.672173913043478	8.5	1-7,100-94;12-21,89-80	8-11,93-90[SIL]	((((((((((....(((((((&)))))))....))))))))))	CAUGUUCUAUUAGUCAAUAAU&AUUAUUGUUAUAUAGAAUAUG	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN10810_c0_g1_91_TPlot.pdf
TRINITY_DN10816_c0_g1:75	si_a832	TRINITY_DN10816_c0_g1	64	85	75	-23.10	-15.90	0.688311688311688	7.5	3-8,83-78;9-19,76-66	1-2,85-84[UP5];x-x,77-77[BULt];20-21,65-64[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	UCGCUUCUAUUUUGUUUUCUAU&AAAGAAAA-AAAAUAGAAGUUG	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a832_TRINITY_DN10816_c0_g1_75_TPlot.pdf
TRINITY_DN10816_c0_g1:76	si_a831	TRINITY_DN10816_c0_g1	65	86	76	-23.40	-15.90	0.67948717948718	8.5	4-9,83-78;10-20,76-66	1-3,86-84[UP5];x-x,77-77[BULt];21-21,65-65[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	CGCUUCUAUUUUGUUUUCUAUU&GAAAGAAAA-AAAAUAGAAGUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a831_TRINITY_DN10816_c0_g1_76_TPlot.pdf
TRINITY_DN1081_c0_g1:808	si_s670	TRINITY_DN1081_c0_g1	797	817	808	-26.90	-17.70	0.657992565055762	5.5	2-13,816-805;15-20,803-798	1-1,817-817[UP5];14-14,804-804[SIL];21-21,797-797[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UUGUUUUAAUAGUCAAUUUGG&UCGAAUUGAUUAUAGAAACAU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s670_TRINITY_DN1081_c0_g1_808_TPlot.pdf
TRINITY_DN1081_c0_g1:821	si_a764	TRINITY_DN1081_c0_g1	810	830	821	-28.90	-18.90	0.653979238754325	8.5	2-14,829-817;16-16,815-815	1-1,830-830[UP5];15-15,816-816[SIL];17-21,814-810[UP3]	.....(.(((((((((((((.&.))))))))))))).).....	CAAUUUGGAUCAAGAACCCAG&UUGGGUUUUUGAUUGAUUCAA	4	0.999999999462557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1081_c0_g1_821_TPlot.pdf
TRINITY_DN1081_c0_g1:822	si_a763	TRINITY_DN1081_c0_g1	811	831	822	-28.80	-20.60	0.715277777777778	7.5	1-15,831-817;17-17,815-815	16-16,816-816[SIL];18-21,814-811[UP3]	....(.(((((((((((((((&))))))))))))))).)....	AAUUUGGAUCAAGAACCCAGA&UUUGGGUUUUUGAUUGAUUCA	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1081_c0_g1_822_TPlot.pdf
TRINITY_DN10821_c0_g2:127	si_a627	TRINITY_DN10821_c0_g2	116	135	127	-29.50	-20.60	0.698305084745763	6.5	1-7,135-129;9-10,128-127;12-21,125-116	8-8,x-x[BULq];11-11,126-126[SIL]	((((((((((.((-(((((((&))))))).)).))))))))))	GAAGAAUUGGGAU-AUACGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN10821_c0_g2_127_TPlot.pdf
TRINITY_DN10821_c0_g2:278	si_a793	TRINITY_DN10821_c0_g2	266	292	278	-28.50	-18.60	0.652631578947368	17	1-9,292-284;12-16,276-272;17-21,270-266	10-11,283-277[AILt];x-x,271-271[BULt]	(((((.(((((.......(((((((((&)))))))))-----..)))))-)))))	UCGGAUUUGGAUAAUUAUGUAGAAAGA&UUUUUCUAU-----UUUCCAA-UCCGA	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN10821_c0_g2_278_TPlot.pdf
TRINITY_DN10821_c0_g2:318	si_s75	TRINITY_DN10821_c0_g2	305	327	318	-24.00	-15.90	0.6625	14	5-12,323-316;13-21,313-305	1-4,327-324[UP5];x-x,315-314[BULt]	(((((((((..((((((((....&....))))))))--)))))))))	GGAAAGGGAUUGGAAGAAACCAA&UAUUUUUUUUCU--UUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN10821_c0_g2_318_TPlot.pdf
TRINITY_DN10823_c0_g1:1031	si_s72	TRINITY_DN10823_c0_g1	1020	1041	1031	-24.10	-16.50	0.684647302904564	9.5	1-8,1041-1034;9-16,1032-1025;18-20,1023-1021	x-x,1033-1033[BULt];17-17,1024-1024[SIL];21-21,1020-1020[UP3]	.(((.((((((((.((((((((&))))))))-)))))))).))).	CGGGUGAGAGAAGUAAGUGGAG&UUCUAUUU-UUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10823_c0_g1_1031_TPlot.pdf
TRINITY_DN10823_c0_g1:588	si_s12	TRINITY_DN10823_c0_g1	574	597	588	-22.80	-15.50	0.679824561403509	7	1-8,597-590;10-16,588-582;17-21,578-574	9-9,589-589[SIL];x-x,581-579[BULt]	(((((...(((((((.((((((((&)))))))).)))))))---)))))	GAUCAAAAAUGUAGUUGUAAUAAG&CUUAUUAUUACUAUAU---UGAUU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN10823_c0_g1_588_TPlot.pdf
TRINITY_DN10823_c0_g1:589	si_s11	TRINITY_DN10823_c0_g1	575	598	589	-23.60	-16.20	0.686440677966102	6.5	1-9,598-590;11-17,588-582;18-21,578-575	10-10,589-589[SIL];x-x,581-579[BULt]	((((...(((((((.(((((((((&))))))))).)))))))---))))	AUCAAAAAUGUAGUUGUAAUAAGU&ACUUAUUAUUACUAUAU---UGAU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN10823_c0_g1_589_TPlot.pdf
TRINITY_DN10823_c0_g1:590	si_s10	TRINITY_DN10823_c0_g1	579	599	590	-23.80	-16.90	0.710084033613445	6	1-10,599-590;12-19,588-581	11-11,589-589[SIL];20-21,580-579[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AAAAUGUAGUUGUAAUAAGUG&UACUUAUUAUUACUAUAUUGA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN10823_c0_g1_590_TPlot.pdf
TRINITY_DN10823_c0_g1:593	si_s7	TRINITY_DN10823_c0_g1	582	602	593	-21.70	-15.70	0.723502304147465	5	1-2,602-601;4-13,599-590;15-21,588-582	3-3,600-600[SIL];14-14,589-589[SIL]	(((((((.((((((((((.((&)).)))))))))).)))))))	AUGUAGUUGUAAUAAGUGUUA&UAUUACUUAUUAUUACUAUAU	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN10823_c0_g1_593_TPlot.pdf
TRINITY_DN10823_c0_g1:594	si_s6	TRINITY_DN10823_c0_g1	583	603	594	-21.70	-15.50	0.714285714285714	5	1-3,603-601;5-14,599-590;16-21,588-583	4-4,600-600[SIL];15-15,589-589[SIL]	((((((.((((((((((.(((&))).)))))))))).))))))	UGUAGUUGUAAUAAGUGUUAU&AUAUUACUUAUUAUUACUAUA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN10823_c0_g1_594_TPlot.pdf
TRINITY_DN10823_c0_g1:595	si_s5	TRINITY_DN10823_c0_g1	584	604	595	-21.70	-14.40	0.663594470046083	6	2-4,603-601;6-15,599-590;17-21,588-584	1-1,604-604[UP5];5-5,600-600[SIL];16-16,589-589[SIL]	(((((.((((((((((.(((.&.))).)))))))))).)))))	GUAGUUGUAAUAAGUGUUAUU&UAUAUUACUUAUUAUUACUAU	4	0.999992075111343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN10823_c0_g1_595_TPlot.pdf
TRINITY_DN10827_c0_g1:1247	si_s297	TRINITY_DN10827_c0_g1	1232	1256	1247	-29.80	-20.40	0.684563758389262	8	1-13,1256-1244;14-17,1239-1236	x-x,1243-1240[BULt];18-21,1235-1232[UP3]	....((((....(((((((((((((&)))))))))))))----))))....	CCAAUUCGACAACAAUUCCAAUCGA&UCGAUUGGAAUUG----CGAAAAUU	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN10827_c0_g1_1247_TPlot.pdf
TRINITY_DN10827_c0_g1:1248	si_s296	TRINITY_DN10827_c0_g1	1233	1257	1248	-31.60	-23.90	0.756329113924051	7	1-14,1257-1244;15-18,1239-1236	x-x,1243-1240[BULt];19-21,1235-1233[UP3]	...((((....((((((((((((((&))))))))))))))----))))...	CAAUUCGACAACAAUUCCAAUCGAC&GUCGAUUGGAAUUG----CGAAAAU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN10827_c0_g1_1248_TPlot.pdf
TRINITY_DN10827_c0_g1:1255	si_s289	TRINITY_DN10827_c0_g1	1244	1262	1255	-36.40	-24.10	0.662087912087912	7	1-4,1262-1259;8-21,1257-1244	5-7,1258-1258[AILq]	((((((((((((((.--((((&))))...))))))))))))))	CAAUUCCAAUCGACA--GUGU&ACGCCUAGUCGAUUGGAAUUG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s289_TRINITY_DN10827_c0_g1_1255_TPlot.pdf
TRINITY_DN10827_c0_g1:1267	si_a684	TRINITY_DN10827_c0_g1	1257	1276	1267	-35.80	-23.30	0.650837988826816	8	4-12,1273-1265;14-19,1264-1259	1-3,1276-1274[UP5];13-13,x-x[BULq];20-21,1258-1257[UP3]	..((((((-(((((((((...&...))))))))).))))))..	CAGUGUUC-AAACCGCGUCAG&UUCACGCGGUUUCGAACACAA	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a684_TRINITY_DN10827_c0_g1_1267_TPlot.pdf
TRINITY_DN10827_c0_g1:1268	si_a683	TRINITY_DN10827_c0_g1	1258	1277	1268	-35.80	-23.30	0.650837988826816	9	5-13,1273-1265;15-20,1264-1259	1-4,1277-1274[UP5];14-14,x-x[BULq];21-21,1258-1258[UP3]	.((((((-(((((((((....&....))))))))).)))))).	AGUGUUC-AAACCGCGUCAGA&AUUCACGCGGUUUCGAACACA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN10827_c0_g1_1268_TPlot.pdf
TRINITY_DN10827_c0_g1:3744	si_a289	TRINITY_DN10827_c0_g1	3732	3753	3744	-28.20	-19.80	0.702127659574468	7	2-15,3752-3739;18-20,3735-3733	1-1,3753-3753[UP5];16-17,3738-3736[AILt];21-21,3732-3732[UP3]	.(((...((((((((((((((.&.))))))))))))))-..))).	UUCUCGCUUUGAAUCCGAGCGU&UCGCUUGGAUUUAAA-AAAGAU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN10827_c0_g1_3744_TPlot.pdf
TRINITY_DN10827_c0_g1:3746	si_a287	TRINITY_DN10827_c0_g1	3735	3755	3746	-29.20	-19.50	0.667808219178082	10.5	4-17,3752-3739	1-3,3755-3753[UP5];18-21,3738-3735[UP3]	....((((((((((((((...&...))))))))))))))....	UCGCUUUGAAUCCGAGCGUUG&GAUCGCUUGGAUUUAAAAAAG	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN10827_c0_g1_3746_TPlot.pdf
TRINITY_DN10829_c0_g1:115	si_a72	TRINITY_DN10829_c0_g1	100	124	115	-21.90	-15.90	0.726027397260274	12	2-10,123-115;11-21,110-100	1-1,124-124[UP5];x-x,114-111[BULt]	(((((((((((....(((((((((.&.)))))))))----)))))))))))	GUGAUGAAAAAAAAUCAGUUUGAGC&UUUCAAAUUG----UUUUUCAUUAU	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN10829_c0_g1_115_TPlot.pdf
TRINITY_DN10848_c0_g1:102	si_a24	TRINITY_DN10848_c0_g1	90	111	102	-24.20	-15.90	0.65702479338843	9	3-11,109-101;12-19,99-92	1-2,111-110[UP5];x-x,100-100[BULt];20-21,91-90[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	AGCUUAGAACUUAGAAGUAACA&AUUUAUUUUUA-GUUCUAAGAC	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN10848_c0_g1_102_TPlot.pdf
TRINITY_DN10848_c0_g1:103	si_a23	TRINITY_DN10848_c0_g1	91	112	103	-22.80	-15.90	0.697368421052632	10	4-12,109-101;13-20,99-92	1-3,112-110[UP5];x-x,100-100[BULt];21-21,91-91[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	GCUUAGAACUUAGAAGUAACAA&UAUUUAUUUUUA-GUUCUAAGA	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN10848_c0_g1_103_TPlot.pdf
TRINITY_DN10848_c0_g1:197	si_s41	TRINITY_DN10848_c0_g1	186	208	197	-25.00	-16.40	0.656	7	1-4,208-205;5-15,202-192;18-21,189-186	x-x,204-203[BULt];16-17,191-190[SIL]	((((..(((((((((((..((((&))))--)))))))))))..))))	UGAAGGCCAAUUAUUAAAAGGAU&AUCU--UUAAUAAUUGGAUUUCA	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN10848_c0_g1_197_TPlot.pdf
TRINITY_DN10848_c0_g1:198	si_s40	TRINITY_DN10848_c0_g1	187	209	198	-24.30	-15.90	0.654320987654321	7	1-5,209-205;6-16,202-192;19-21,189-187	x-x,204-203[BULt];17-18,191-190[SIL]	(((..(((((((((((..(((((&)))))--)))))))))))..)))	GAAGGCCAAUUAUUAAAAGGAUU&AAUCU--UUAAUAAUUGGAUUUC	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN10848_c0_g1_198_TPlot.pdf
TRINITY_DN10848_c0_g1:211	si_a394	TRINITY_DN10848_c0_g1	200	220	211	-24.30	-16.40	0.674897119341564	6	3-15,218-206;17-21,204-200	1-2,220-219[UP5];16-16,205-205[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UAAAAGGAUUCUAUAUUUUGG&UAAGAAUAUAGAAUUGUUUUG	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN10848_c0_g1_211_TPlot.pdf
TRINITY_DN10848_c0_g1:212	si_a393	TRINITY_DN10848_c0_g1	201	221	212	-22.70	-15.30	0.674008810572687	7.5	4-16,218-206;18-21,204-201	1-3,221-219[UP5];17-17,205-205[SIL]	((((.(((((((((((((...&...))))))))))))).))))	AAAAGGAUUCUAUAUUUUGGA&UUAAGAAUAUAGAAUUGUUUU	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN10848_c0_g1_212_TPlot.pdf
TRINITY_DN1084_c0_g1:291	si_s312	TRINITY_DN1084_c0_g1	280	300	291	-29.00	-19.00	0.655172413793103	17	8-20,293-281	1-7,300-294[UP5];21-21,280-280[UP3]	.(((((((((((((.......&.......))))))))))))).	AGGCGAGGAGGGCAAAAACAG&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1084_c0_g1_291_TPlot.pdf
TRINITY_DN1084_c0_g2:2608	si_a414	TRINITY_DN1084_c0_g2	2596	2617	2608	-18.10	-12.20	0.674033149171271	5.5	1-4,2617-2614;6-17,2612-2601;18-21,2599-2596	5-5,2613-2613[SIL];x-x,2600-2600[BULt]	((((.((((((((((((.((((&)))).))))))))))))-))))	UAUGUUUUAUUUAAAUGGGAAC&GUUUAUAUUUAAAUAAA-UAUA	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN1084_c0_g2_2608_TPlot.pdf
TRINITY_DN1084_c0_g2:2619	si_a221	TRINITY_DN1084_c0_g2	2608	2630	2619	-25.20	-16.40	0.650793650793651	10	3-7,2628-2624;8-19,2621-2610	1-2,2630-2629[UP5];x-x,2623-2622[BULt];20-21,2609-2608[UP3]	..((((((((((((..(((((..&..)))))--))))))))))))..	AAAUGGGAACAUGAAUGUUUACC&AUUAAAC--UCAUGUUUCUAUAA	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN1084_c0_g2_2619_TPlot.pdf
TRINITY_DN10851_c0_g1:2905	si_a67	TRINITY_DN10851_c0_g1	2894	2914	2905	-27.20	-18.20	0.669117647058823	5.5	1-4,2914-2911;6-18,2909-2897;20-21,2895-2894	5-5,2910-2910[SIL];19-19,2896-2896[SIL]	((.(((((((((((((.((((&)))).))))))))))))).))	GAUAAACGAUUUGGAAAAGGC&GCUUCUUUCAAAUUGUUUUUC	4	0.99999999987842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN10851_c0_g1_2905_TPlot.pdf
TRINITY_DN10851_c0_g1:3031	si_s799	TRINITY_DN10851_c0_g1	3020	3046	3031	-30.00	-22.16	0.738666666666667	17.5	1-8,3046-3039;10-21,3031-3020	9-9,3038-3032[AILt]	((((((((((((.......((((((((&))))))))------.))))))))))))	GGUGGCGAGGAUCAAAGACAGAUGCGA&UCGUAUUU------UAUCUUCGUUACC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN10851_c0_g1_3031_TPlot.pdf
TRINITY_DN10851_c0_g1:3481	si_s571	TRINITY_DN10851_c0_g1	3470	3490	3481	-29.60	-19.30	0.652027027027027	8.5	1-11,3490-3480;13-16,3478-3475	12-12,3479-3479[SIL];17-21,3474-3470[UP3]	.....((((.(((((((((((&))))))))))).)))).....	GACAGUUUGGUUCUUGUCCCG&CGGGACAAGGAAUAAAAAAAU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN10851_c0_g1_3481_TPlot.pdf
TRINITY_DN10853_c0_g1:856	si_s68	TRINITY_DN10853_c0_g1	845	865	856	-23.10	-15.50	0.670995670995671	6	1-8,865-858;10-13,856-853;15-21,851-845	9-9,857-857[SIL];14-14,852-852[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	AAAGAAAUAAGGAAGGAGUUG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN10853_c0_g1_856_TPlot.pdf
TRINITY_DN10857_c0_g2:98	si_a285	TRINITY_DN10857_c0_g2	87	107	98	-28.30	-18.80	0.664310954063604	8.5	4-13,104-95;16-21,92-87	1-3,107-105[UP5];14-15,94-93[SIL]	((((((..((((((((((...&...))))))))))..))))))	UUUUUGUUUCCAAGCGGUAAA&AAGAUCGCUUGGAUUUAAAAA	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN10857_c0_g2_98_TPlot.pdf
TRINITY_DN10865_c0_g1:585	si_a823	TRINITY_DN10865_c0_g1	574	594	585	-25.50	-17.70	0.694117647058824	10	4-16,591-579	1-3,594-592[UP5];17-21,578-574[UP3]	.....(((((((((((((...&...))))))))))))).....	GUCAAUUUCUUUCCUUUCGUU&GAAGAAAGGAAAGAAAAAAAA	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN10865_c0_g1_585_TPlot.pdf
TRINITY_DN10865_c0_g2:293	si_a824	TRINITY_DN10865_c0_g2	282	302	293	-23.60	-17.70	0.75	9	3-15,300-288	1-2,302-301[UP5];16-21,287-282[UP3]	......(((((((((((((..&..)))))))))))))......	AGUCAAUUUCUUUCCUUUCGU&AAGAAAGGAAAGAAAAAAAAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN10865_c0_g2_293_TPlot.pdf
TRINITY_DN10865_c0_g2:294	si_a823	TRINITY_DN10865_c0_g2	283	303	294	-25.50	-17.70	0.694117647058824	10	4-16,300-288	1-3,303-301[UP5];17-21,287-283[UP3]	.....(((((((((((((...&...))))))))))))).....	GUCAAUUUCUUUCCUUUCGUU&GAAGAAAGGAAAGAAAAAAAA	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN10865_c0_g2_294_TPlot.pdf
TRINITY_DN1086_c0_g1:1903	si_a20	TRINITY_DN1086_c0_g1	1890	1912	1903	-26.70	-19.10	0.715355805243446	10	1-11,1912-1902;13-17,1900-1896;18-20,1893-1891	12-12,1901-1901[SIL];x-x,1895-1894[BULt];21-21,1890-1890[UP3]	.(((..(((((.(((((((((((&))))))))))).)))))--))).	GAGAUAACUAAUGGUGGAUGGGC&GCCUAUUUAUUUUUAGU--UCUA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1086_c0_g1_1903_TPlot.pdf
TRINITY_DN10872_c0_g1:337	si_a344	TRINITY_DN10872_c0_g1	326	346	337	-28.50	-20.00	0.701754385964912	7.5	1-15,346-332	16-21,331-326[UP3]	......(((((((((((((((&)))))))))))))))......	CUGUAGUGAUAUUUUUGGGAC&GUCCCGAAAAUAUUAAUUCUA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN10872_c0_g1_337_TPlot.pdf
TRINITY_DN10872_c0_g1:338	si_a343	TRINITY_DN10872_c0_g1	327	347	338	-28.80	-21.00	0.729166666666667	6.5	1-16,347-332	17-21,331-327[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGUAGUGAUAUUUUUGGGACA&UGUCCCGAAAAUAUUAAUUCU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN10872_c0_g1_338_TPlot.pdf
TRINITY_DN10872_c0_g1:339	si_a342	TRINITY_DN10872_c0_g1	328	348	339	-28.20	-21.90	0.776595744680851	5.5	1-17,348-332	18-21,331-328[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUAGUGAUAUUUUUGGGACAA&UUGUCCCGAAAAUAUUAAUUC	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a342_TRINITY_DN10872_c0_g1_339_TPlot.pdf
TRINITY_DN10872_c0_g1:344	si_a337	TRINITY_DN10872_c0_g1	333	353	344	-30.80	-20.80	0.675324675324675	10	6-21,348-333	1-5,353-349[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUAUUUUUGGGACAAAAGAU&AUUCCUUGUCCCGAAAAUAUU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN10872_c0_g1_344_TPlot.pdf
TRINITY_DN10876_c2_g1:203	si_s21	TRINITY_DN10876_c2_g1	192	212	203	-27.40	-18.80	0.686131386861314	10	2-3,211-210;5-17,208-196	1-1,212-212[UP5];4-4,209-209[SIL];18-21,195-192[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	UAACGUUGCAGUCAAUGGGGA&ACUAUAUUGAUUGCAACUAAA	0	0.0573262718733907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN10876_c2_g1_203_TPlot.pdf
TRINITY_DN10876_c2_g1:204	si_s20	TRINITY_DN10876_c2_g1	193	213	204	-27.80	-18.80	0.676258992805755	11	3-4,211-210;6-18,208-196	1-2,213-212[UP5];5-5,209-209[SIL];19-21,195-193[UP3]	...(((((((((((((.((..&..)).)))))))))))))...	AACGUUGCAGUCAAUGGGGAA&UACUAUAUUGAUUGCAACUAA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN10876_c2_g1_204_TPlot.pdf
TRINITY_DN10877_c0_g1:77	si_a113	TRINITY_DN10877_c0_g1	67	86	77	-26.20	-17.20	0.656488549618321	10	5-17,82-70;19-21,69-67	1-4,86-83[UP5];18-18,x-x[BULq]	(((-(((((((((((((....&....))))))))))))).)))	UGU-AGACAAGCUUGUAGACA&AAAAUACGAGCUUGUUUUAUA	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN10877_c0_g1_77_TPlot.pdf
TRINITY_DN10877_c0_g1:78	si_a112	TRINITY_DN10877_c0_g1	67	87	78	-26.20	-17.10	0.652671755725191	13.5	6-18,82-70	1-5,87-83[UP5];19-21,69-67[UP3]	...(((((((((((((.....&.....)))))))))))))...	UGUAGACAAGCUUGUAGACAA&UAAAAUACGAGCUUGUUUUAU	3	0.99999863267643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN10877_c0_g1_78_TPlot.pdf
TRINITY_DN10879_c0_g1:594	si_a319	TRINITY_DN10879_c0_g1	583	603	594	-22.40	-14.80	0.660714285714286	10.5	4-7,600-597;9-20,595-584	1-3,603-601[UP5];8-8,596-596[SIL];21-21,583-583[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	UGUAAGGAAAUCGAGGAUUAA&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN10879_c0_g1_594_TPlot.pdf
TRINITY_DN10879_c0_g1:595	si_a318	TRINITY_DN10879_c0_g1	584	604	595	-22.50	-15.40	0.684444444444444	6.5	1-3,604-602;5-8,600-597;10-21,595-584	4-4,601-601[SIL];9-9,596-596[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	GUAAGGAAAUCGAGGAUUAAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999153632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN10879_c0_g1_595_TPlot.pdf
TRINITY_DN10883_c0_g1:39	si_s71	TRINITY_DN10883_c0_g1	26	48	39	-25.70	-17.40	0.67704280155642	7.5	1-11,48-38;12-18,36-30;19-20,28-27	x-x,37-37[BULt];x-x,29-29[BULt];21-21,26-26[UP3]	.((.(((((((.(((((((((((&)))))))))))-)))))))-)).	UGGUGAAGAAGUAAAAAUGGAGG&CUUCUAUUUUU-UUUCUUU-CCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10883_c0_g1_39_TPlot.pdf
TRINITY_DN10887_c0_g1:589	si_s76	TRINITY_DN10887_c0_g1	578	598	589	-23.60	-15.50	0.656779661016949	8	2-11,597-588;13-18,586-581	1-1,598-598[UP5];12-12,587-587[SIL];19-21,580-578[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	AAAAAAGGAUAGAGAAGAAAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10887_c0_g1_589_TPlot.pdf
TRINITY_DN10887_c0_g1:593	si_s74	TRINITY_DN10887_c0_g1	580	602	593	-25.00	-16.40	0.656	7.5	2-14,601-589;15-20,586-581	1-1,602-602[UP5];x-x,588-587[BULt];21-21,580-580[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	AAAAGGAUAGAGAAGAAAAGUGC&CUAUUUUUUUUCUU--UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN10887_c0_g1_593_TPlot.pdf
TRINITY_DN10889_c1_g1:427	si_s352	TRINITY_DN10889_c1_g1	416	436	427	-27.20	-18.10	0.665441176470588	4.5	1-20,436-417	21-21,416-416[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GUCAGUUUAUUUUUUUAUUUU&GAGAUAAAGAAAUAGAUUGAA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN10889_c1_g1_427_TPlot.pdf
TRINITY_DN1088_c0_g1:3803	si_s699	TRINITY_DN1088_c0_g1	3792	3812	3803	-28.60	-20.20	0.706293706293706	9.5	4-17,3809-3796;19-20,3794-3793	1-3,3812-3810[UP5];18-18,3795-3795[SIL];21-21,3792-3792[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	CUUGGCUAAUGAAUCGGCAAG&UUAGUCGAUUUAUUAGUGAAC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN1088_c0_g1_3803_TPlot.pdf
TRINITY_DN1088_c0_g1:4283	si_a784	TRINITY_DN1088_c0_g1	4272	4297	4283	-24.70	-16.10	0.651821862348178	15	1-4,4297-4294;5-18,4288-4275	x-x,4293-4289[BULt];19-21,4274-4272[UP3]	...((((((((((((((.....((((&))))-----))))))))))))))...	CAUAUAGAAAAAUGGAGAAGACGAGU&ACUC-----UUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1088_c0_g1_4283_TPlot.pdf
TRINITY_DN1088_c0_g2:1936	si_a318	TRINITY_DN1088_c0_g2	1926	1945	1936	-22.50	-15.70	0.697777777777778	6	2-13,1944-1933;16-20,1931-1927	1-1,1945-1945[UP5];14-15,1932-1932[AILq];21-21,1926-1926[UP3]	.(((((.-((((((((((((.&.))))))))))))..))))).	UUAAAAU-AUCAUGGGUAGAG&AUUUAUCCAUGAUUUUUUUAU	2	0.999965705272606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1088_c0_g2_1936_TPlot.pdf
TRINITY_DN1088_c0_g2:1999	si_a326	TRINITY_DN1088_c0_g2	1988	2010	1999	-26.20	-17.26	0.658778625954199	13	1-9,2010-2002;13-21,1996-1988	10-12,2001-1997[AILt]	(((((((((.....(((((((((&)))))))))--...)))))))))	GAUAGGGAACUGCUAGAGAUCAU&AUGAUUUUU--UUAUUCCUUGUC	4	0.999999999974148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1088_c0_g2_1999_TPlot.pdf
TRINITY_DN1088_c0_g2:2091	si_a786	TRINITY_DN1088_c0_g2	2083	2100	2091	-26.60	-18.10	0.680451127819549	6.5	1-14,2100-2087;18-21,2086-2083	15-17,x-x[BULq]	((((---((((((((((((((&))))))))))))))...))))	GGAG---GGAAAAGUGGAAGG&UCUUCUAUUUUUCUAUUUUCC	4	0.999999999939736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1088_c0_g2_2091_TPlot.pdf
TRINITY_DN10894_c0_g2:333	si_a305	TRINITY_DN10894_c0_g2	322	342	333	-32.80	-22.10	0.673780487804878	10	5-12,338-331;14-21,329-322	1-4,342-339[UP5];13-13,330-330[SIL]	((((((((.((((((((....&....)))))))).))))))))	GGAUGAGUGUAAGCGAAAAAU&AAGAUUCGCUUGGAUUUAUCC	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN10894_c0_g2_333_TPlot.pdf
TRINITY_DN10896_c0_g1:24	si_s513	TRINITY_DN10896_c0_g1	13	33	24	-24.90	-16.50	0.662650602409639	9	3-5,31-29;7-20,27-14	1-2,33-32[UP5];6-6,28-28[SIL];21-21,13-13[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	AUUGAGUUAGGAAUGAAGAUU&AUUCUAUAUUCUUAAUUCGAA	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN10896_c0_g1_24_TPlot.pdf
TRINITY_DN10897_c0_g2:326	si_s82	TRINITY_DN10897_c0_g2	315	335	326	-28.90	-20.48	0.708650519031142	3.5	1-15,335-321;19-21,317-315	16-18,320-318[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	AAGUCAGAGAAAGGAAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN10897_c0_g2_326_TPlot.pdf
TRINITY_DN10897_c0_g2:332	si_s76	TRINITY_DN10897_c0_g2	321	341	332	-23.60	-20.60	0.872881355932203	9.5	6-21,336-321	1-5,341-337[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAAAGGAAAGAAAAUAUAA&AUUUUUUUUCUUUCCUUUCUU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN10897_c0_g2_332_TPlot.pdf
TRINITY_DN10897_c0_g2:336	si_s72	TRINITY_DN10897_c0_g2	325	345	336	-24.10	-15.94	0.661410788381743	10	1-4,345-342;10-21,336-325	5-9,341-337[SIL]	((((((((((((.....((((&)))).....))))))))))))	AAGGAAAGAAAAUAUAAAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10897_c0_g2_336_TPlot.pdf
TRINITY_DN108_c0_g1:2359	si_s1	TRINITY_DN108_c0_g1	2348	2368	2359	-18.70	-12.40	0.663101604278075	12	5-8,2364-2361;10-20,2359-2349	1-4,2368-2365[UP5];9-9,2360-2360[SIL];21-21,2348-2348[UP3]	.(((((((((((.((((....&....)))).))))))))))).	GAGUGAUAAGUAUUGUACAUA&UUUUUAUAUUACUUAUUAUUA	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN108_c0_g1_2359_TPlot.pdf
TRINITY_DN108_c0_g1:356	si_a758	TRINITY_DN108_c0_g1	345	365	356	-34.00	-22.20	0.652941176470588	9.5	2-10,364-356;13-18,353-348	1-1,365-365[UP5];11-12,355-354[SIL];19-21,347-345[UP3]	...((((((..(((((((((.&.)))))))))..))))))...	ACCUCAAGAAACCAGAGGAGA&CCUCCUUUGGGUUUUUGAUUG	3	0.999999989599644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN108_c0_g1_356_TPlot.pdf
TRINITY_DN108_c0_g1:47	si_a17	TRINITY_DN108_c0_g1	36	56	47	-24.30	-15.90	0.654320987654321	6.5	1-16,56-41	17-21,40-36[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAAGUGAAAUAAAUAGGUUUU&AAAGCCUAUUUAUUUUUAGUU	3	0.999999998944216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN108_c0_g1_47_TPlot.pdf
TRINITY_DN108_c0_g1:49	si_a15	TRINITY_DN108_c0_g1	38	58	49	-26.20	-18.10	0.690839694656489	5.5	1-18,58-41	19-21,40-38[UP3]	...((((((((((((((((((&))))))))))))))))))...	AGUGAAAUAAAUAGGUUUUUU&AGAAAGCCUAUUUAUUUUUAG	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN108_c0_g1_49_TPlot.pdf
TRINITY_DN108_c0_g1:511	si_a497	TRINITY_DN108_c0_g1	500	519	511	-32.00	-21.60	0.675	8	2-5,518-515;7-19,514-502	1-1,519-519[UP5];6-6,x-x[BULq];20-21,501-500[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	AUGGGAGAUGAAGAG-GACAG&AUGUCGUUUUUCGUCUUCCUU	4	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN108_c0_g1_511_TPlot.pdf
TRINITY_DN108_c0_g1:752	si_s72	TRINITY_DN108_c0_g1	740	761	752	-24.10	-16.50	0.684647302904564	7.5	1-4,761-758;6-10,756-752;11-21,750-740	5-5,757-757[SIL];x-x,751-751[BULt]	(((((((((((.(((((.((((&)))).)))))-)))))))))))	AAGGAAAGGAGCAAAGAAAGGA&UUCUAUUUUU-UUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN108_c0_g1_752_TPlot.pdf
TRINITY_DN108_c0_g1:760	si_s80	TRINITY_DN108_c0_g1	747	768	760	-28.20	-18.90	0.670212765957447	5.5	1-8,768-761;10-17,760-753;18-21,750-747	9-9,x-x[BULq];x-x,752-751[BULt]	((((..((((((((-((((((((&)))))))).))))))))--))))	GGAGCAAAGAAAGG-AAGAAGAA&UUUUUCUUUCCUUUCUU--CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN108_c0_g1_760_TPlot.pdf
TRINITY_DN108_c0_g1:849	si_s84	TRINITY_DN108_c0_g1	833	858	849	-32.30	-22.10	0.68421052631579	11	1-10,858-849;11-18,844-837;19-21,835-833	x-x,848-845[BULt];x-x,836-836[BULt]	(((.((((((((....((((((((((&))))))))))----))))))))-)))	CGAGAGGGGAAGCAAAAAAGGGAAGA&UCUUUCCUUU----CUUCUUCU-UCG	3	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN108_c0_g1_849_TPlot.pdf
TRINITY_DN108_c0_g1:850	si_a67	TRINITY_DN108_c0_g1	839	861	850	-27.20	-19.36	0.711764705882353	13.5	1-9,861-853;13-21,847-839	10-12,852-848[AILt]	(((((((((.....(((((((((&)))))))))--...)))))))))	GGGAAGCAAAAAAGGGAAGAGGC&GCUUCUUUC--AAAUUGUUUUUC	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN108_c0_g1_850_TPlot.pdf
TRINITY_DN108_c0_g1:864	si_s806	TRINITY_DN108_c0_g1	852	873	864	-28.60	-19.00	0.664335664335664	12.5	4-8,870-866;10-12,864-862;13-21,860-852	1-3,873-871[UP5];9-9,865-865[SIL];x-x,861-861[BULt]	(((((((((.(((.(((((...&...))))).)))-)))))))))	GGGAAGAGGCUGAGGAGGAGAG&UUAUCUUCGUUA-CCUUUUCUU	4	0.999999999996437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN108_c0_g1_864_TPlot.pdf
TRINITY_DN108_c0_g1:891	si_a330	TRINITY_DN108_c0_g1	880	900	891	-30.50	-23.20	0.760655737704918	5.5	1-7,900-894;9-14,892-887;16-20,885-881	8-8,893-893[SIL];15-15,886-886[SIL];21-21,880-880[UP3]	.(((((.((((((.(((((((&))))))).)))))).))))).	GCGGGAGGAGGAAAAAAAGAA&UUUUUUUAUUCCUUGUCCCGA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN108_c0_g1_891_TPlot.pdf
TRINITY_DN108_c0_g1:893	si_s70	TRINITY_DN108_c0_g1	882	902	893	-25.80	-21.40	0.829457364341085	5	2-6,901-897;8-21,895-882	1-1,902-902[UP5];7-7,896-896[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GGGAGGAGGAAAAAAAGAAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN108_c0_g1_893_TPlot.pdf
TRINITY_DN10901_c1_g1:1767	si_a70	TRINITY_DN10901_c1_g1	1756	1776	1767	-23.90	-16.90	0.707112970711297	11	6-21,1771-1756	1-5,1776-1772[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUGGAGAGCAAUUUGUUACC&UCUUUCAAAUUGUUUUUCAUU	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN10901_c1_g1_1767_TPlot.pdf
TRINITY_DN10901_c1_g1:1768	si_a69	TRINITY_DN10901_c1_g1	1757	1777	1768	-24.00	-15.80	0.658333333333333	12.5	7-21,1771-1757	1-6,1777-1772[UP5]	(((((((((((((((......&......)))))))))))))))	AUGGAGAGCAAUUUGUUACCG&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999999888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN10901_c1_g1_1768_TPlot.pdf
TRINITY_DN10901_c1_g1:4648	si_s93	TRINITY_DN10901_c1_g1	4637	4659	4648	-34.80	-23.10	0.663793103448276	11.5	1-5,4659-4655;6-11,4652-4647;13-18,4645-4640	x-x,4654-4653[BULt];12-12,4646-4646[SIL];19-21,4639-4637[UP3]	...((((((.((((((..(((((&)))))--)))))).))))))...	GCCCCGAGGGGAAGAGACGAGGA&UCUUC--UUCUUCGCUUCGGAUU	4	0.99999999999562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN10901_c1_g1_4648_TPlot.pdf
TRINITY_DN10901_c1_g1:4650	si_s91	TRINITY_DN10901_c1_g1	4639	4661	4650	-34.70	-23.30	0.671469740634006	11.5	3-7,4659-4655;8-13,4652-4647;15-20,4645-4640	1-2,4661-4660[UP5];x-x,4654-4653[BULt];14-14,4646-4646[SIL];21-21,4639-4639[UP3]	.((((((.((((((..(((((..&..)))))--)))))).)))))).	CCCGAGGGGAAGAGACGAGGAUG&UUUCUUC--UUCUUCGCUUCGGA	4	0.999999999998407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN10901_c1_g1_4650_TPlot.pdf
TRINITY_DN10901_c1_g1:5771	si_a497	TRINITY_DN10901_c1_g1	5758	5780	5771	-32.00	-21.00	0.65625	10	3-10,5778-5771;11-13,5769-5767;15-21,5764-5758	1-2,5780-5779[UP5];x-x,5770-5770[BULt];14-14,5766-5765[AILt]	(((((((..(((.((((((((..&..))))))))-)))-.)))))))	AAGGAAGCUCGAUGAGGCGACUG&AUGUCGUUUU-UCG-UCUUCCUU	2	0.999999999998159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN10901_c1_g1_5771_TPlot.pdf
TRINITY_DN10909_c0_g1:1666	si_a486	TRINITY_DN10909_c0_g1	1655	1675	1666	-24.90	-16.50	0.662650602409639	7.5	1-14,1675-1662;17-19,1659-1657	15-16,1661-1660[SIL];20-21,1656-1655[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUAUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN10909_c0_g1_1666_TPlot.pdf
TRINITY_DN10909_c0_g2:1762	si_s246	TRINITY_DN10909_c0_g2	1751	1769	1762	-31.70	-20.80	0.65615141955836	8	1-6,1769-1764;10-20,1762-1752	7-9,1763-1763[AILq];21-21,1751-1751[UP3]	.(((((((((((.--((((((&))))))...))))))))))).	CUAUAUCGGGAAU--CCUGUU&AAUAGGCAUUUCCCGAUAUAU	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN10909_c0_g2_1762_TPlot.pdf
TRINITY_DN10909_c0_g2:768	si_a406	TRINITY_DN10909_c0_g2	757	777	768	-19.80	-14.10	0.712121212121212	9.5	2-8,776-770;10-19,768-759	1-1,777-777[UP5];9-9,769-769[SIL];20-21,758-757[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	CAUGGAUGUGGAGAAGACAAC&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999117959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN10909_c0_g2_768_TPlot.pdf
TRINITY_DN10909_c2_g1:29	si_a837	TRINITY_DN10909_c2_g1	18	38	29	-25.80	-17.30	0.670542635658915	15	8-19,31-20	1-7,38-32[UP5];20-21,19-18[UP3]	..((((((((((((.......&.......))))))))))))..	UAUAGCAACUUCUAACCUAGG&AAAAAAAUAGAAGUUGCUAAC	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN10909_c2_g1_29_TPlot.pdf
TRINITY_DN1090_c0_g1:1281	si_a485	TRINITY_DN1090_c0_g1	1270	1290	1281	-26.60	-17.50	0.657894736842105	9	1-7,1290-1284;9-17,1282-1274	8-8,1283-1283[SIL];18-21,1273-1270[UP3]	....(((((((((.(((((((&))))))).)))))))))....	CAAAGACAUAUUUGGUAUGAC&GUUAUAUAGAAUAUGUCGUUU	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN1090_c0_g1_1281_TPlot.pdf
TRINITY_DN1090_c0_g1:1282	si_a484	TRINITY_DN1090_c0_g1	1271	1291	1282	-27.30	-18.30	0.67032967032967	8	1-8,1291-1284;10-18,1282-1274	9-9,1283-1283[SIL];19-21,1273-1271[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AAAGACAUAUUUGGUAUGACA&UGUUAUAUAGAAUAUGUCGUU	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN1090_c0_g1_1282_TPlot.pdf
TRINITY_DN1090_c0_g1:1283	si_a483	TRINITY_DN1090_c0_g1	1272	1292	1283	-27.40	-18.40	0.671532846715328	8	2-9,1291-1284;11-19,1282-1274	1-1,1292-1292[UP5];10-10,1283-1283[SIL];20-21,1273-1272[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AAGACAUAUUUGGUAUGACAC&UUGUUAUAUAGAAUAUGUCGU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN1090_c0_g1_1283_TPlot.pdf
TRINITY_DN1090_c0_g1:818	si_a783	TRINITY_DN1090_c0_g1	807	827	818	-24.70	-16.30	0.659919028340081	6.5	1-3,827-825;4-9,823-818;11-21,817-807	x-x,824-824[BULt];10-10,x-x[BULq]	(((((((((((-((((((.(((&)))-)))))).)))))))))))	AAAUGGAAAGA-AGGAGAUGUU&AAC-UCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1090_c0_g1_818_TPlot.pdf
TRINITY_DN10915_c0_g1:1249	si_s735	TRINITY_DN10915_c0_g1	1235	1258	1249	-35.50	-23.10	0.650704225352113	11.5	2-12,1257-1247;16-21,1240-1235	1-1,1258-1258[UP5];13-15,1246-1241[AILt]	((((((......(((((((((((.&.)))))))))))---...))))))	UCAAUUGUCACAUCACCCGUCUGA&CUAGACGGGUGA---AUAGAUUGA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s735_TRINITY_DN10915_c0_g1_1249_TPlot.pdf
TRINITY_DN10915_c0_g1:2238	si_a635	TRINITY_DN10915_c0_g1	2227	2248	2238	-26.10	-18.20	0.697318007662835	11.5	3-9,2246-2240;10-18,2238-2230	1-2,2248-2247[UP5];x-x,2239-2239[BULt];19-21,2229-2227[UP3]	...(((((((((.(((((((..&..)))))))-)))))))))...	AGCGCUCAAGGGCAAUCGACGA&AUGUCGAUU-UUUUUGAGUAAU	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN10915_c0_g1_2238_TPlot.pdf
TRINITY_DN10915_c0_g1:2240	si_a634	TRINITY_DN10915_c0_g1	2228	2249	2240	-26.40	-18.20	0.689393939393939	12	4-10,2246-2240;11-19,2238-2230	1-3,2249-2247[UP5];x-x,2239-2239[BULt];20-21,2229-2228[UP3]	..(((((((((.(((((((...&...)))))))-)))))))))..	GCGCUCAAGGGCAAUCGACGAC&UAUGUCGAUU-UUUUUGAGUAA	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN10915_c0_g1_2240_TPlot.pdf
TRINITY_DN10915_c0_g1:2241	si_a633	TRINITY_DN10915_c0_g1	2229	2250	2241	-26.40	-18.20	0.689393939393939	12.5	5-11,2246-2240;12-20,2238-2230	1-4,2250-2247[UP5];x-x,2239-2239[BULt];21-21,2229-2229[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	CGCUCAAGGGCAAUCGACGACG&UUAUGUCGAUU-UUUUUGAGUA	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN10915_c0_g1_2241_TPlot.pdf
TRINITY_DN10915_c0_g1:2242	si_a632	TRINITY_DN10915_c0_g1	2230	2251	2242	-26.10	-18.00	0.689655172413793	13	6-12,2246-2240;13-21,2238-2230	1-5,2251-2247[UP5];x-x,2239-2239[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	GCUCAAGGGCAAUCGACGACGG&AUUAUGUCGAUU-UUUUUGAGU	4	0.999958677919561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN10915_c0_g1_2242_TPlot.pdf
TRINITY_DN10915_c0_g1:2589	si_a28	TRINITY_DN10915_c0_g1	2578	2598	2589	-30.70	-20.80	0.677524429967427	8.5	1-12,2598-2587;15-19,2584-2580;21-21,2578-2578	13-14,2586-2585[SIL];20-20,2579-2579[SIL]	(.(((((..((((((((((((&))))))))))))..))))).)	AGUGGUCGAGGAGCUGAAGGU&AUUUUUAGUUCUAAGACCGGU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN10915_c0_g1_2589_TPlot.pdf
TRINITY_DN10915_c0_g1:2590	si_a27	TRINITY_DN10915_c0_g1	2579	2599	2590	-30.30	-20.20	0.666666666666667	9	2-13,2598-2587;16-20,2584-2580	1-1,2599-2599[UP5];14-15,2586-2585[SIL];21-21,2579-2579[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	GUGGUCGAGGAGCUGAAGGUC&UAUUUUUAGUUCUAAGACCGG	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN10915_c0_g1_2590_TPlot.pdf
TRINITY_DN10915_c0_g1:2592	si_a25	TRINITY_DN10915_c0_g1	2581	2601	2592	-26.50	-19.30	0.728301886792453	11.5	4-15,2598-2587;18-21,2584-2581	1-3,2601-2599[UP5];16-17,2586-2585[SIL]	((((..((((((((((((...&...))))))))))))..))))	GGUCGAGGAGCUGAAGGUCUU&UUUAUUUUUAGUUCUAAGACC	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN10915_c0_g1_2592_TPlot.pdf
TRINITY_DN10915_c0_g1:2616	si_s729	TRINITY_DN10915_c0_g1	2604	2626	2616	-32.10	-21.70	0.67601246105919	11	4-8,2623-2619;9-11,2617-2615;12-20,2613-2605	1-3,2626-2624[UP5];x-x,2618-2618[BULt];x-x,2614-2614[BULt];21-21,2604-2604[UP3]	.(((((((((.(((.(((((...&...)))))-)))-))))))))).	GAUUCACCCGAUCUCAGAUGGAG&UAUUAUCU-AGA-CGGGUGAAUA	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN10915_c0_g1_2616_TPlot.pdf
TRINITY_DN10915_c0_g1:3438	si_a363	TRINITY_DN10915_c0_g1	3427	3447	3438	-26.40	-19.20	0.727272727272727	10	4-18,3444-3430	1-3,3447-3445[UP5];19-21,3429-3427[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAUUUGAUCUGGUCAAAGAA&UAUUUUGAUCGGAUCAAAAAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN10915_c0_g1_3438_TPlot.pdf
TRINITY_DN10918_c0_g1:2585	si_a784	TRINITY_DN10918_c0_g1	2574	2594	2585	-24.70	-19.80	0.801619433198381	8	2-16,2593-2579	1-1,2594-2594[UP5];17-21,2578-2574[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUGGAGAAAAGUAGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN10918_c0_g1_2585_TPlot.pdf
TRINITY_DN10922_c0_g2:278	si_s876	TRINITY_DN10922_c0_g2	267	287	278	-24.20	-15.78	0.652066115702479	6.5	1-1,287-287;3-11,285-277;15-21,273-267	2-2,286-286[SIL];12-14,276-274[SIL]	(((((((...(((((((((.(&).)))))))))...)))))))	GUUUAUUCCGAGUUCUAAGUC&GUCUUAGAACUAAAAAUAAAU	0	0.0938573320680314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN10922_c0_g2_278_TPlot.pdf
TRINITY_DN10922_c0_g2:320	si_a637	TRINITY_DN10922_c0_g2	309	329	320	-25.80	-16.80	0.651162790697674	7.5	1-14,329-316;16-16,314-314	15-15,315-315[SIL];17-21,313-309[UP3]	.....(.((((((((((((((&)))))))))))))).).....	UUCUAAGUCAGAAAAAUCGAU&GUCGAUUUUUUUGAGUAAUAU	4	0.999999999998855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN10922_c0_g2_320_TPlot.pdf
TRINITY_DN10922_c0_g4:95	si_s260	TRINITY_DN10922_c0_g4	84	104	95	-24.10	-16.20	0.672199170124481	7	1-6,104-99;9-12,96-93;15-21,90-84	7-8,98-97[SIL];13-14,92-91[SIL]	(((((((..((((..((((((&))))))..))))..)))))))	GAUUUUUCAGAGUUCUAUGUC&GAUAUAUUACUCAAAAAAAUC	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN10922_c0_g4_95_TPlot.pdf
TRINITY_DN10929_c0_g1:1042	si_a28	TRINITY_DN10929_c0_g1	1028	1051	1042	-30.70	-20.40	0.664495114006515	9.5	3-13,1049-1039;14-20,1035-1029	1-2,1051-1050[UP5];x-x,1038-1036[BULt];21-21,1028-1028[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	CUCGGUCUGGAUGGGACUAAAAUU&AUUUUUAGUUCUA---AGACCGGU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN10929_c0_g1_1042_TPlot.pdf
TRINITY_DN10929_c0_g1:1044	si_a26	TRINITY_DN10929_c0_g1	1030	1053	1044	-28.00	-19.10	0.682142857142857	11.5	5-15,1049-1039;16-21,1035-1030	1-4,1053-1050[UP5];x-x,1038-1036[BULt]	((((((...(((((((((((....&....)))))))))))---))))))	CGGUCUGGAUGGGACUAAAAUUCG&UUAUUUUUAGUUCUA---AGACCG	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN10929_c0_g1_1044_TPlot.pdf
TRINITY_DN10929_c0_g1:1045	si_a25	TRINITY_DN10929_c0_g1	1031	1054	1045	-26.50	-17.30	0.652830188679245	13	6-16,1049-1039;17-21,1035-1031	1-5,1054-1050[UP5];x-x,1038-1036[BULt]	(((((...(((((((((((.....&.....)))))))))))---)))))	GGUCUGGAUGGGACUAAAAUUCGC&UUUAUUUUUAGUUCUA---AGACC	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN10929_c0_g1_1045_TPlot.pdf
TRINITY_DN10929_c0_g1:1682	si_a683	TRINITY_DN10929_c0_g1	1671	1690	1682	-35.80	-24.30	0.67877094972067	8	2-5,1689-1686;7-11,1685-1681;14-21,1678-1671	1-1,1690-1690[UP5];6-6,x-x[BULq];12-13,1680-1679[SIL]	((((((((..(((((-((((.&.)))).)))))..))))))))	UGUGUUCGUCGCCGC-UGGAG&AUUCACGCGGUUUCGAACACA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN10929_c0_g1_1682_TPlot.pdf
TRINITY_DN10929_c0_g1:2594	si_s671	TRINITY_DN10929_c0_g1	2583	2603	2594	-27.60	-19.60	0.710144927536232	6.5	1-8,2603-2596;10-21,2594-2583	9-9,2595-2595[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UAUGUUUCUGUAUUUGAUUUG&CGAAUUGAUUAUAGAAACAUG	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s671_TRINITY_DN10929_c0_g1_2594_TPlot.pdf
TRINITY_DN10929_c0_g1:2597	si_s668	TRINITY_DN10929_c0_g1	2586	2606	2597	-28.20	-18.90	0.670212765957447	7	1-11,2606-2596;13-21,2594-2586	12-12,2595-2595[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GUUUCUGUAUUUGAUUUGGUU&GAUCGAAUUGAUUAUAGAAAC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s668_TRINITY_DN10929_c0_g1_2597_TPlot.pdf
TRINITY_DN10929_c0_g1:656	si_s717	TRINITY_DN10929_c0_g1	645	666	656	-30.10	-20.40	0.677740863787375	10.5	4-8,663-659;10-21,656-645	1-3,666-664[UP5];9-9,658-657[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	UGGAUGAUGUCUAGUCCCUUAC&AACAGGGA-AAGAUAUUAUCUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN10929_c0_g1_656_TPlot.pdf
TRINITY_DN1092_c0_g1:1641	si_a497	TRINITY_DN1092_c0_g1	1629	1650	1641	-32.00	-21.90	0.684375	7.5	2-10,1649-1641;13-21,1637-1629	1-1,1650-1650[UP5];11-12,1640-1638[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	AAGGAAGAUUCCAAAACGACAA&AUGUCGUUUU-UCGUCUUCCUU	4	0.999999999990202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1092_c0_g1_1641_TPlot.pdf
TRINITY_DN1092_c0_g1:1650	si_a142	TRINITY_DN1092_c0_g1	1639	1659	1650	-23.50	-15.80	0.672340425531915	12.5	6-19,1654-1641	1-5,1659-1655[UP5];20-21,1640-1639[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCAAAACGACAAUGAUAGAAA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999998344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1092_c0_g1_1650_TPlot.pdf
TRINITY_DN10935_c0_g1:2037	si_s7	TRINITY_DN10935_c0_g1	2026	2046	2037	-21.70	-14.70	0.67741935483871	10	4-17,2043-2030	1-3,2046-2044[UP5];18-21,2029-2026[UP3]	....((((((((((((((...&...))))))))))))))....	AAACAGUAAUAAUAAGUGUUG&UAUUACUUAUUAUUACUAUAU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN10935_c0_g1_2037_TPlot.pdf
TRINITY_DN1093_c0_g1:1348	si_a785	TRINITY_DN1093_c0_g1	1337	1355	1348	-25.90	-18.30	0.706563706563707	8	1-7,1355-1349;10-20,1348-1338	8-9,x-x[BULq];21-21,1337-1337[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	AGAGAUAGAAGA--GGAAGAG&CUCUUCUAUUUUUCUAUUUUC	2	0.999986175771277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1093_c0_g1_1348_TPlot.pdf
TRINITY_DN1093_c0_g1:1354	si_s81	TRINITY_DN1093_c0_g1	1343	1363	1354	-28.90	-18.80	0.650519031141869	7.5	2-6,1362-1358;8-9,1356-1355;11-21,1353-1343	1-1,1363-1363[UP5];7-7,1357-1357[SIL];10-10,1354-1354[SIL]	(((((((((((.((.(((((.&.))))).)).)))))))))))	AGAAGAGGAAGAGAUAGAGAU&UUUUCUUUCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1093_c0_g1_1354_TPlot.pdf
TRINITY_DN1093_c0_g1:1356	si_s73	TRINITY_DN1093_c0_g1	1344	1366	1356	-24.00	-17.90	0.745833333333333	7	1-9,1366-1358;10-17,1356-1349;18-21,1347-1344	x-x,1357-1357[BULt];x-x,1348-1348[BULt]	((((.((((((((.(((((((((&)))))))))-))))))))-))))	GAAGAGGAAGAGAUAGAGAUAGA&UCUAUUUUU-UUUCUUUC-CUUU	3	0.999999998100946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1093_c0_g1_1356_TPlot.pdf
TRINITY_DN1093_c0_g1:1358	si_s72	TRINITY_DN1093_c0_g1	1345	1367	1358	-24.10	-17.70	0.734439834024896	6.5	1-10,1367-1358;11-18,1356-1349;19-21,1347-1345	x-x,1357-1357[BULt];x-x,1348-1348[BULt]	(((.((((((((.((((((((((&))))))))))-))))))))-)))	AAGAGGAAGAGAUAGAGAUAGAA&UUCUAUUUUU-UUUCUUUC-CUU	3	0.999999999940415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1093_c0_g1_1358_TPlot.pdf
TRINITY_DN1093_c0_g1:1359	si_s71	TRINITY_DN1093_c0_g1	1346	1368	1359	-25.70	-19.70	0.766536964980545	6	1-11,1368-1358;12-19,1356-1349;20-21,1347-1346	x-x,1357-1357[BULt];x-x,1348-1348[BULt]	((.((((((((.(((((((((((&)))))))))))-))))))))-))	AGAGGAAGAGAUAGAGAUAGAAG&CUUCUAUUUUU-UUUCUUUC-CU	4	0.999835249032249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1093_c0_g1_1359_TPlot.pdf
TRINITY_DN1093_c0_g1:1361	si_s69	TRINITY_DN1093_c0_g1	1349	1370	1361	-23.40	-18.90	0.807692307692308	7	3-13,1368-1358;14-21,1356-1349	1-2,1370-1369[UP5];x-x,1357-1357[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GGAAGAGAUAGAGAUAGAAGAA&AACUUCUAUUUUU-UUUCUUUC	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1093_c0_g1_1361_TPlot.pdf
TRINITY_DN1093_c0_g1:1362	si_s68	TRINITY_DN1093_c0_g1	1350	1371	1362	-23.10	-16.60	0.718614718614719	8.5	4-14,1368-1358;15-21,1356-1350	1-3,1371-1369[UP5];x-x,1357-1357[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GAAGAGAUAGAGAUAGAAGAAG&CAACUUCUAUUUUU-UUUCUUU	2	0.999972927599039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1093_c0_g1_1362_TPlot.pdf
TRINITY_DN1093_c0_g1:1401	si_a168	TRINITY_DN1093_c0_g1	1389	1409	1401	-34.40	-22.50	0.654069767441861	6	1-7,1409-1403;9-10,1402-1401;11-19,1399-1391	8-8,x-x[BULq];x-x,1400-1400[BULt];20-21,1390-1389[UP3]	..(((((((((.((-(((((((&))))))).))-)))))))))..	GUUCUAGACGGCGU-AAUAGAU&AUCUAUUCAC-CCGUCUAGAUA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN1093_c0_g1_1401_TPlot.pdf
TRINITY_DN1093_c0_g1:1434	si_a497	TRINITY_DN1093_c0_g1	1423	1443	1434	-32.00	-21.10	0.659375	6	2-11,1442-1433;13-15,1432-1430;16-20,1428-1424	1-1,1443-1443[UP5];12-12,x-x[BULq];x-x,1429-1429[BULt];21-21,1423-1423[UP3]	.(((((.(((-((((((((((.&.)))))))))).)))-))))).	UAGGAAUGAC-AGAAACGACAG&AUGUCGUUUUUCGUC-UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1093_c0_g1_1434_TPlot.pdf
TRINITY_DN1093_c0_g1:1507	si_s91	TRINITY_DN1093_c0_g1	1496	1516	1507	-34.70	-23.30	0.671469740634006	6.5	1-13,1516-1504;16-20,1501-1497	14-15,1503-1502[SIL];21-21,1496-1496[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	ACUGAAAGGGAGAAGGAGAGA&UUUCUUCUUCUUCGCUUCGGA	3	0.999999999998592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN1093_c0_g1_1507_TPlot.pdf
TRINITY_DN1093_c0_g1:2445	si_s64	TRINITY_DN1093_c0_g1	2434	2454	2445	-24.10	-17.20	0.713692946058091	9.5	1-6,2454-2449;8-17,2447-2438	7-7,2448-2448[SIL];18-21,2437-2434[UP3]	....((((((((((.((((((&)))))).))))))))))....	CAUCGAAAUGGAGGAUGCUGA&UUAGCAACUUCUAUUUUUUUU	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1093_c0_g1_2445_TPlot.pdf
TRINITY_DN1093_c0_g1:4430	si_s74	TRINITY_DN1093_c0_g1	4419	4439	4430	-25.00	-16.30	0.652	9	1-2,4439-4438;5-18,4435-4422;20-21,4420-4419	3-4,4437-4436[SIL];19-19,4421-4421[SIL]	((.((((((((((((((..((&))..)))))))))))))).))	GGUGGGGAGGAGAAGAACAAG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1093_c0_g1_4430_TPlot.pdf
TRINITY_DN1093_c0_g1:5204	si_a487	TRINITY_DN1093_c0_g1	5194	5213	5204	-24.80	-16.30	0.657258064516129	6	1-11,5213-5203;13-21,5202-5194	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GAGAACGAU-UAUUUUGUAUG&UAUAUAGAAUAUGUCGUUUUU	4	0.999911308480448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN1093_c0_g1_5204_TPlot.pdf
TRINITY_DN1093_c0_g1:5207	si_a709	TRINITY_DN1093_c0_g1	5196	5215	5207	-26.60	-18.20	0.684210526315789	5	1-5,5215-5211;8-20,5209-5197	6-7,5210-5210[AILq];21-21,5196-5196[UP3]	.(((((((((((((.-(((((&)))))..))))))))))))).	GAACGAUUAUUUUGU-AUGUA&UACAUUCCAAAAUAAUCGUUA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN1093_c0_g1_5207_TPlot.pdf
TRINITY_DN10943_c0_g2:16	si_a13	TRINITY_DN10943_c0_g2	5	26	16	-26.80	-17.50	0.652985074626866	9.5	1-9,26-18;10-14,16-12	x-x,17-17[BULt];15-21,11-5[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GACUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN10943_c0_g2_16_TPlot.pdf
TRINITY_DN10943_c0_g2:18	si_a12	TRINITY_DN10943_c0_g2	6	27	18	-26.80	-17.80	0.664179104477612	9.5	2-10,26-18;11-15,16-12	1-1,27-27[UP5];x-x,17-17[BULt];16-21,11-6[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	ACUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN10943_c0_g2_18_TPlot.pdf
TRINITY_DN10943_c0_g3:16	si_a13	TRINITY_DN10943_c0_g3	5	26	16	-26.80	-17.50	0.652985074626866	9.5	1-9,26-18;10-14,16-12	x-x,17-17[BULt];15-21,11-5[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GACUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN10943_c0_g3_16_TPlot.pdf
TRINITY_DN10943_c0_g3:18	si_a12	TRINITY_DN10943_c0_g3	6	27	18	-26.80	-17.80	0.664179104477612	9.5	2-10,26-18;11-15,16-12	1-1,27-27[UP5];x-x,17-17[BULt];16-21,11-6[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	ACUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN10943_c0_g3_18_TPlot.pdf
TRINITY_DN10945_c0_g1:512	si_a899	TRINITY_DN10945_c0_g1	501	521	512	-18.70	-12.50	0.668449197860963	8	3-5,519-517;7-19,515-503	1-2,521-520[UP5];6-6,516-516[SIL];20-21,502-501[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	UAUUUAUAUUACUUACUGUAG&UAAUAAUAAGUAAUAUAAAAA	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN10945_c0_g1_512_TPlot.pdf
TRINITY_DN10945_c2_g1:1091	si_s74	TRINITY_DN10945_c2_g1	1080	1100	1091	-25.00	-19.70	0.788	9.5	6-21,1095-1080	1-5,1100-1096[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGGGAAAGAAAAAACCAAC&CUAUUUUUUUUCUUUCCUUUC	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN10945_c2_g1_1091_TPlot.pdf
TRINITY_DN10945_c2_g1:1093	si_s72	TRINITY_DN10945_c2_g1	1082	1104	1093	-24.10	-16.20	0.672199170124481	6.5	1-4,1104-1101;6-7,1099-1098;8-21,1095-1082	5-5,1100-1100[SIL];x-x,1097-1096[BULt]	((((((((((((((..((.((((&)))).))--))))))))))))))	AGGGAAAGAAAAAACCAACAGAA&UUCUAUU--UUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN10945_c2_g1_1093_TPlot.pdf
TRINITY_DN10945_c2_g1:1094	si_s71	TRINITY_DN10945_c2_g1	1083	1105	1094	-25.70	-18.30	0.712062256809339	6.5	1-5,1105-1101;7-8,1099-1098;9-21,1095-1083	6-6,1100-1100[SIL];x-x,1097-1096[BULt]	(((((((((((((..((.(((((&))))).))--)))))))))))))	GGGAAAGAAAAAACCAACAGAAG&CUUCUAUU--UUUUUUCUUUCCU	3	0.999999999999802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10945_c2_g1_1094_TPlot.pdf
TRINITY_DN10945_c2_g1:1095	si_s70	TRINITY_DN10945_c2_g1	1084	1106	1095	-25.80	-17.20	0.666666666666667	7	2-6,1105-1101;8-9,1099-1098;10-21,1095-1084	1-1,1106-1106[UP5];7-7,1100-1100[SIL];x-x,1097-1096[BULt]	((((((((((((..((.(((((.&.))))).))--))))))))))))	GGAAAGAAAAAACCAACAGAAGA&ACUUCUAUU--UUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10945_c2_g1_1095_TPlot.pdf
TRINITY_DN10946_c1_g1:14	si_a398	TRINITY_DN10946_c1_g1	3	22	14	-22.40	-18.20	0.8125	5.5	1-4,22-19;6-20,18-4	5-5,x-x[BULq];21-21,3-3[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	GGAGCAAGACAGUUCU-UAUU&AAUAUAGAAUUGUUUUGUUUA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN10946_c1_g1_14_TPlot.pdf
TRINITY_DN10949_c0_g1:1348	si_a65	TRINITY_DN10949_c0_g1	1340	1357	1348	-27.70	-18.80	0.67870036101083	6	1-11,1357-1347;15-21,1346-1340	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	AAAACGA---GAAAGAGGCGG&UCGCUUCUUUCAAAUUGUUUU	4	0.999998131673448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN10949_c0_g1_1348_TPlot.pdf
TRINITY_DN10954_c0_g1:469	si_a69	TRINITY_DN10954_c0_g1	458	477	469	-24.00	-18.00	0.75	6.5	2-9,476-469;11-19,468-460	1-1,477-477[UP5];10-10,x-x[BULq];20-21,459-458[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	CCGAAGAACAG-UUGAAAGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN10954_c0_g1_469_TPlot.pdf
TRINITY_DN10957_c0_g1:913	si_s250	TRINITY_DN10957_c0_g1	905	922	913	-33.30	-23.00	0.690690690690691	5.5	1-10,922-913;12-12,911-911;16-21,910-905	11-11,912-912[SIL];13-15,x-x[BULq]	((((((---(.((((((((((&)))))))))).)...))))))	AGUAGU---UGGGGAAAUGCC&GGCAUUUCCCGAUAUAUUACU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN10957_c0_g1_913_TPlot.pdf
TRINITY_DN10957_c0_g1:914	si_s249	TRINITY_DN10957_c0_g1	903	923	914	-33.30	-22.90	0.687687687687688	7.5	2-11,922-913;13-13,911-911;16-19,908-905	1-1,923-923[UP5];12-12,912-912[SIL];14-15,910-909[SIL];20-21,904-903[UP3]	..((((..(.((((((((((.&.)))))))))).)..))))..	CAAGUAGUUGGGGAAAUGCCA&AGGCAUUUCCCGAUAUAUUAC	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN10957_c0_g1_914_TPlot.pdf
TRINITY_DN10957_c0_g1:915	si_s248	TRINITY_DN10957_c0_g1	904	924	915	-31.90	-22.90	0.717868338557994	7.5	3-12,922-913;14-14,911-911;17-20,908-905	1-2,924-923[UP5];13-13,912-912[SIL];15-16,910-909[SIL];21-21,904-904[UP3]	.((((..(.((((((((((..&..)))))))))).)..)))).	AAGUAGUUGGGGAAAUGCCAA&UAGGCAUUUCCCGAUAUAUUA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN10957_c0_g1_915_TPlot.pdf
TRINITY_DN10957_c0_g1:916	si_s247	TRINITY_DN10957_c0_g1	905	925	916	-31.70	-22.60	0.712933753943218	8.5	4-13,922-913;15-15,911-911;18-21,908-905	1-3,925-923[UP5];14-14,912-912[SIL];16-17,910-909[SIL]	((((..(.((((((((((...&...)))))))))).)..))))	AGUAGUUGGGGAAAUGCCAAG&AUAGGCAUUUCCCGAUAUAUU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN10957_c0_g1_916_TPlot.pdf
TRINITY_DN10957_c0_g1:917	si_s246	TRINITY_DN10957_c0_g1	906	926	917	-31.70	-21.80	0.687697160883281	10.5	5-14,922-913;16-16,911-911;19-21,908-906	1-4,926-923[UP5];15-15,912-912[SIL];17-18,910-909[SIL]	(((..(.((((((((((....&....)))))))))).)..)))	GUAGUUGGGGAAAUGCCAAGU&AAUAGGCAUUUCCCGAUAUAU	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN10957_c0_g1_917_TPlot.pdf
TRINITY_DN10958_c0_g1:1862	si_s40	TRINITY_DN10958_c0_g1	1851	1871	1862	-24.30	-16.40	0.674897119341564	6	2-7,1870-1865;10-17,1862-1855;19-21,1853-1851	1-1,1871-1871[UP5];8-9,1864-1863[SIL];18-18,1854-1854[SIL]	(((.((((((((..((((((.&.))))))..)))))))).)))	GAAUUCCAAUUACAAAAGAUA&AAUCUUUAAUAAUUGGAUUUC	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN10958_c0_g1_1862_TPlot.pdf
TRINITY_DN1095_c0_g2:1154	si_s27	TRINITY_DN1095_c0_g2	1143	1162	1154	-27.00	-19.70	0.72962962962963	5.5	1-9,1162-1154;11-20,1153-1144	10-10,x-x[BULq];21-21,1143-1143[UP3]	.((((((((((-(((((((((&))))))))).)))))))))).	CAAGGAUUUGG-UGCAAUUAA&UUGAUUGCAACUAAAUCUUUA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN1095_c0_g2_1154_TPlot.pdf
TRINITY_DN1095_c0_g2:1155	si_s25	TRINITY_DN1095_c0_g2	1145	1164	1155	-27.10	-18.70	0.690036900369004	7	3-11,1162-1154;13-21,1153-1145	1-2,1164-1163[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	AGGAUUUGG-UGCAAUUAAAA&UAUUGAUUGCAACUAAAUCUU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN1095_c0_g2_1155_TPlot.pdf
TRINITY_DN1095_c0_g2:1156	si_s24	TRINITY_DN1095_c0_g2	1146	1165	1156	-27.30	-17.90	0.655677655677656	8	4-12,1162-1154;14-21,1153-1146	1-3,1165-1163[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GGAUUUGG-UGCAAUUAAAAA&AUAUUGAUUGCAACUAAAUCU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN1095_c0_g2_1156_TPlot.pdf
TRINITY_DN1095_c0_g2:1462	si_s479	TRINITY_DN1095_c0_g2	1450	1471	1462	-26.40	-18.30	0.693181818181818	10	1-12,1471-1460;13-18,1458-1453	x-x,1459-1459[BULt];19-21,1452-1450[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AACAAAUGGUGUGUGGGAUCUG&CGGAUCCUAUAU-UUAUUUAAA	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN1095_c0_g2_1462_TPlot.pdf
TRINITY_DN1095_c0_g2:1463	si_s478	TRINITY_DN1095_c0_g2	1451	1472	1463	-27.20	-18.50	0.680147058823529	8.5	2-13,1471-1460;14-19,1458-1453	1-1,1472-1472[UP5];x-x,1459-1459[BULt];20-21,1452-1451[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	ACAAAUGGUGUGUGGGAUCUGG&ACGGAUCCUAUAU-UUAUUUAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN1095_c0_g2_1463_TPlot.pdf
TRINITY_DN1095_c0_g2:1464	si_s477	TRINITY_DN1095_c0_g2	1452	1473	1464	-27.10	-18.50	0.682656826568266	9.5	3-14,1471-1460;15-20,1458-1453	1-2,1473-1472[UP5];x-x,1459-1459[BULt];21-21,1452-1452[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	CAAAUGGUGUGUGGGAUCUGGU&AACGGAUCCUAUAU-UUAUUUA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN1095_c0_g2_1464_TPlot.pdf
TRINITY_DN1095_c0_g2:2445	si_a71	TRINITY_DN1095_c0_g2	2434	2460	2445	-23.30	-15.44	0.662660944206009	18.5	1-5,2460-2456;8-20,2447-2435	6-7,2455-2448[AILt];21-21,2434-2434[UP3]	.(((((((((((((........(((((&)))))------..))))))))))))).	AGAUGAAGGACAAUGAUAAAUGGAAAG&CUUUC------AAAUUGUUUUUCAUUA	3	0.99999999998369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1095_c0_g2_2445_TPlot.pdf
TRINITY_DN1095_c0_g2:2554	si_a791	TRINITY_DN1095_c0_g2	2543	2565	2554	-26.50	-18.60	0.70188679245283	8.5	1-9,2565-2557;10-20,2554-2544	x-x,2556-2555[BULt];21-21,2543-2543[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	UGAUUGGGAAAUAAGGAAAGGUA&UAUUUUUCU--AUUUUCCAAUCC	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1095_c0_g2_2554_TPlot.pdf
TRINITY_DN1095_c0_g2:574	si_s127	TRINITY_DN1095_c0_g2	563	583	574	-29.90	-19.78	0.661538461538462	6.5	1-14,583-570;18-20,566-564	15-17,569-567[SIL];21-21,563-563[UP3]	.(((...((((((((((((((&))))))))))))))...))).	CGGUAUUUUCGACUCUUCUGU&AUAGAAGAGUUGAAUCAAUCA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s127_TRINITY_DN1095_c0_g2_574_TPlot.pdf
TRINITY_DN1095_c0_g2:578	si_s123	TRINITY_DN1095_c0_g2	567	587	578	-27.00	-20.30	0.751851851851852	9.5	4-18,584-570	1-3,587-585[UP5];19-21,569-567[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUUUUCGACUCUUCUGUUGAC&AAAAAUAGAAGAGUUGAAUCA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN1095_c0_g2_578_TPlot.pdf
TRINITY_DN1095_c0_g2:582	si_s119	TRINITY_DN1095_c0_g2	571	591	582	-27.40	-19.30	0.704379562043796	14.5	8-21,584-571	1-7,591-585[UP5]	((((((((((((((.......&.......))))))))))))))	UCGACUCUUCUGUUGACAUAC&AUAGAAAAAUAGAAGAGUUGA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN1095_c0_g2_582_TPlot.pdf
TRINITY_DN1095_c0_g2:583	si_s118	TRINITY_DN1095_c0_g2	572	592	583	-26.40	-17.20	0.651515151515151	16.5	9-21,584-572	1-8,592-585[UP5]	(((((((((((((........&........)))))))))))))	CGACUCUUCUGUUGACAUACA&AAUAGAAAAAUAGAAGAGUUG	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN1095_c0_g2_583_TPlot.pdf
TRINITY_DN10962_c0_g1:434	si_s474	TRINITY_DN10962_c0_g1	423	445	434	-31.80	-22.08	0.694339622641509	11	1-3,445-443;6-19,438-425	4-5,442-439[AILt];20-21,424-423[UP3]	..((((((((((((((....(((&)))--..))))))))))))))..	AAAAAUAUAGGGUCCGAUGAGGA&UCC--AACGGAUCCUAUAUUUAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN10962_c0_g1_434_TPlot.pdf
TRINITY_DN10968_c0_g1:1344	si_s803	TRINITY_DN10968_c0_g1	1333	1353	1344	-26.00	-19.80	0.761538461538462	9	4-8,1350-1346;10-20,1344-1334	1-3,1353-1351[UP5];9-9,1345-1345[SIL];21-21,1333-1333[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CGAGGGUAACGAUGAUAACGA&AUUUUAUCUUCGUUACCUUUU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN10968_c0_g1_1344_TPlot.pdf
TRINITY_DN10968_c0_g1:1442	si_a399	TRINITY_DN10968_c0_g1	1431	1451	1442	-22.60	-15.20	0.672566371681416	9.5	2-10,1450-1442;12-21,1440-1431	1-1,1451-1451[UP5];11-11,1441-1441[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AUAGGCGAAGAGGUUCUGUGC&AUAUAGAAUUGUUUUGUUUAU	4	0.999999953576019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN10968_c0_g1_1442_TPlot.pdf
TRINITY_DN10968_c0_g1:2118	si_a504	TRINITY_DN10968_c0_g1	2107	2127	2118	-32.90	-22.70	0.689969604863222	7.5	1-16,2127-2112	17-21,2111-2107[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAGGCUAAGGAAGAUGAAGA&UUUUCGUCUUCCUUGGAAUGU	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN10968_c0_g1_2118_TPlot.pdf
TRINITY_DN10968_c0_g1:2119	si_a503	TRINITY_DN10968_c0_g1	2108	2128	2119	-32.10	-23.60	0.735202492211838	6.5	1-17,2128-2112	18-21,2111-2108[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAGGCUAAGGAAGAUGAAGAA&UUUUUCGUCUUCCUUGGAAUG	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN10968_c0_g1_2119_TPlot.pdf
TRINITY_DN10968_c0_g1:2120	si_a502	TRINITY_DN10968_c0_g1	2109	2129	2120	-32.10	-23.60	0.735202492211838	6.5	2-18,2128-2112	1-1,2129-2129[UP5];19-21,2111-2109[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AGGCUAAGGAAGAUGAAGAAG&GUUUUUCGUCUUCCUUGGAAU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN10968_c0_g1_2120_TPlot.pdf
TRINITY_DN10968_c0_g1:2125	si_a497	TRINITY_DN10968_c0_g1	2114	2133	2125	-32.00	-24.00	0.75	4.5	2-5,2132-2129;7-21,2128-2114	1-1,2133-2133[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AAGGAAGAUGAAGAA-GACAC&AUGUCGUUUUUCGUCUUCCUU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN10968_c0_g1_2125_TPlot.pdf
TRINITY_DN10968_c0_g1:2353	si_s83	TRINITY_DN10968_c0_g1	2342	2362	2353	-30.90	-20.50	0.663430420711974	8.5	1-9,2362-2354;11-17,2352-2346	10-10,2353-2353[SIL];18-21,2345-2342[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AGUAGAGAAGAUGGGGAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN10968_c0_g1_2353_TPlot.pdf
TRINITY_DN10968_c0_g1:7208	si_a351	TRINITY_DN10968_c0_g1	7197	7217	7208	-20.50	-13.90	0.678048780487805	5	1-5,7217-7213;7-9,7211-7209;11-20,7207-7198	6-6,7212-7212[SIL];10-10,7208-7208[SIL];21-21,7197-7197[UP3]	.((((((((((.(((.(((((&))))).))).)))))))))).	UUCAAAAUAGAUUUACUAUUU&AAAUAUUAAUUCUAUUUUGAU	3	0.999974771577817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN10968_c0_g1_7208_TPlot.pdf
TRINITY_DN10968_c0_g1:7209	si_a350	TRINITY_DN10968_c0_g1	7198	7218	7209	-20.30	-14.00	0.689655172413793	5	2-6,7217-7213;8-10,7211-7209;12-21,7207-7198	1-1,7218-7218[UP5];7-7,7212-7212[SIL];11-11,7208-7208[SIL]	((((((((((.(((.(((((.&.))))).))).))))))))))	UCAAAAUAGAUUUACUAUUUA&AAAAUAUUAAUUCUAUUUUGA	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN10968_c0_g1_7209_TPlot.pdf
TRINITY_DN10969_c0_g1:2165	si_s12	TRINITY_DN10969_c0_g1	2154	2174	2165	-22.80	-15.40	0.675438596491228	7	2-11,2173-2164;13-19,2162-2156	1-1,2174-2174[UP5];12-12,2163-2163[SIL];20-21,2155-2154[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	CCUCAAUAUUGUGAUGAUAAU&CUUAUUAUUACUAUAUUGAUU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN10969_c0_g1_2165_TPlot.pdf
TRINITY_DN10977_c1_g1:510	si_s81	TRINITY_DN10977_c1_g1	499	519	510	-28.90	-21.90	0.757785467128028	8.5	1-3,519-517;6-20,514-500	4-5,516-515[SIL];21-21,499-499[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	UGAAGAGGAGAGGAGACUAGA&UUUUCUUUCCUUUCUUCUUCU	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN10977_c1_g1_510_TPlot.pdf
TRINITY_DN10977_c1_g1:651	si_s70	TRINITY_DN10977_c1_g1	640	660	651	-25.80	-16.94	0.656589147286822	12.5	2-6,659-655;12-21,649-640	1-1,660-660[UP5];7-11,654-650[SIL]	((((((((((.....(((((.&.))))).....))))))))))	GGAAAGAAGAUUUGAGGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN10977_c1_g1_651_TPlot.pdf
TRINITY_DN10977_c1_g1:657	si_a785	TRINITY_DN10977_c1_g1	645	666	657	-25.90	-17.60	0.67953667953668	7.5	1-7,666-660;9-14,658-653;16-21,650-645	8-8,659-659[SIL];15-15,652-651[AILt]	((((((..((((((.(((((((&))))))).))))))-.))))))	GAAGAUUUGAGGAAGAGAGGAG&CUCUUCUAUUUUUC-UAUUUUC	3	0.999999999999903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN10977_c1_g1_657_TPlot.pdf
TRINITY_DN10977_c1_g1:658	si_s86	TRINITY_DN10977_c1_g1	647	667	658	-32.90	-21.96	0.667477203647416	6.5	1-15,667-653;20-21,648-647	16-19,652-649[SIL]	((....(((((((((((((((&)))))))))))))))....))	AGAUUUGAGGAAGAGAGGAGA&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN10977_c1_g1_658_TPlot.pdf
TRINITY_DN10977_c1_g1:660	si_s84	TRINITY_DN10977_c1_g1	649	670	660	-32.30	-22.60	0.69969040247678	8.5	1-2,670-669;3-17,667-653	x-x,668-668[BULt];18-21,652-649[UP3]	....(((((((((((((((.((&))-)))))))))))))))....	AUUUGAGGAAGAGAGGAGACGA&UC-UUUCCUUUCUUCUUCUUCG	3	0.999999999976039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN10977_c1_g1_660_TPlot.pdf
TRINITY_DN10977_c1_g1:665	si_s79	TRINITY_DN10977_c1_g1	654	675	665	-26.20	-20.20	0.770992366412214	6	1-3,675-673;5-7,671-669;8-21,667-654	4-4,672-672[SIL];x-x,668-668[BULt]	((((((((((((((.(((.(((&))).)))-))))))))))))))	AGGAAGAGAGGAGACGAAUAAA&UUUUUUC-UUUCCUUUCUUCUU	2	0.999993995370317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN10977_c1_g1_665_TPlot.pdf
TRINITY_DN10977_c1_g1:666	si_s78	TRINITY_DN10977_c1_g1	655	676	666	-26.20	-19.60	0.748091603053435	7	2-4,675-673;6-8,671-669;9-21,667-655	1-1,676-676[UP5];5-5,672-672[SIL];x-x,668-668[BULt]	(((((((((((((.(((.(((.&.))).)))-)))))))))))))	GGAAGAGAGGAGACGAAUAAAU&UUUUUUUC-UUUCCUUUCUUCU	4	0.999999999997439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN10977_c1_g1_666_TPlot.pdf
TRINITY_DN1097_c0_g1:1745	si_a403	TRINITY_DN1097_c0_g1	1734	1757	1745	-22.00	-15.00	0.681818181818182	11.5	1-6,1757-1752;7-18,1748-1737	x-x,1751-1749[BULt];19-21,1736-1734[UP3]	...((((((((((((...((((((&))))))---))))))))))))...	UGCUGUAAACAGAACCCUAGUUCU&AGAAUU---GUUUUGUUUAUAUUU	3	0.999999998758606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN1097_c0_g1_1745_TPlot.pdf
TRINITY_DN1097_c0_g1:5530	si_a405	TRINITY_DN1097_c0_g1	5519	5539	5530	-19.80	-13.00	0.656565656565657	3	1-13,5539-5527;15-21,5525-5519	14-14,5526-5526[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	UUAAAUAAAAAUAAAAUAAUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1097_c0_g1_5530_TPlot.pdf
TRINITY_DN1097_c0_g1:8938	si_a636	TRINITY_DN1097_c0_g1	8928	8947	8938	-26.30	-17.40	0.661596958174905	5.5	1-15,8947-8933;17-20,8932-8929	16-16,x-x[BULq];21-21,8928-8928[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	AGUUA-UCAAAAAGGUUGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.999999998893116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN1097_c0_g1_8938_TPlot.pdf
TRINITY_DN1097_c0_g1:8942	si_a632	TRINITY_DN1097_c0_g1	8931	8951	8942	-26.10	-17.30	0.662835249042146	10	4-19,8948-8933	1-3,8951-8949[UP5];20-21,8932-8931[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAUCAAAAAGGUUGACAUCCU&AUUAUGUCGAUUUUUUUGAGU	4	0.999999997624242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1097_c0_g1_8942_TPlot.pdf
TRINITY_DN1097_c0_g2:1210	si_s71	TRINITY_DN1097_c0_g2	1199	1222	1210	-25.70	-17.50	0.680933852140078	9.5	1-5,1222-1218;6-10,1214-1210;12-21,1208-1199	x-x,1217-1215[BULt];11-11,1209-1209[SIL]	((((((((((.(((((...(((((&)))))---))))).))))))))))	AGGGAAGAAACAAAAUUGCAGAGG&CUUCU---AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1097_c0_g2_1210_TPlot.pdf
TRINITY_DN1097_c11_g1:520	si_a172	TRINITY_DN1097_c11_g1	509	529	520	-31.90	-24.40	0.764890282131661	8	3-19,527-511	1-2,529-528[UP5];20-21,510-509[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UCAUUGUUUGGAUGGGUGAUA&AUUCACCCGUCUAGAUAAUAU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN1097_c11_g1_520_TPlot.pdf
TRINITY_DN1097_c11_g1:522	si_a170	TRINITY_DN1097_c11_g1	511	530	522	-33.40	-26.00	0.778443113772455	4.5	1-4,530-527;6-21,526-511	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AUUGUUUGGAUGGGUG-AUAG&CUAUUCACCCGUCUAGAUAAU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN1097_c11_g1_522_TPlot.pdf
TRINITY_DN1097_c2_g2:710	si_s1	TRINITY_DN1097_c2_g2	699	719	710	-18.70	-12.60	0.67379679144385	12	5-18,715-702	1-4,719-716[UP5];19-21,701-699[UP3]	...((((((((((((((....&....))))))))))))))...	CUCUGAUAGGUAAUAUGUGGU&UUUUUAUAUUACUUAUUAUUA	4	0.999999994346383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN1097_c2_g2_710_TPlot.pdf
TRINITY_DN1097_c2_g2:713	si_s437	TRINITY_DN1097_c2_g2	702	722	713	-19.70	-13.80	0.700507614213198	6.5	2-15,721-708;17-19,706-704	1-1,722-722[UP5];16-16,707-707[SIL];20-21,703-702[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	UGAUAGGUAAUAUGUGGUUAA&AUAAUUACAUAUUAUAUAUAA	0	0.142806403543409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN1097_c2_g2_713_TPlot.pdf
TRINITY_DN1097_c3_g1:495	si_a418	TRINITY_DN1097_c3_g1	484	504	495	-21.20	-15.30	0.721698113207547	14	8-21,497-484	1-7,504-498[UP5]	((((((((((((((.......&.......))))))))))))))	AUCCUAUAUUUGUUAAUUUAU&AUAUUUAAAUAAAUAUAGGAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN1097_c3_g1_495_TPlot.pdf
TRINITY_DN1097_c3_g1:523	si_a466	TRINITY_DN1097_c3_g1	512	532	523	-21.50	-14.10	0.655813953488372	5.5	1-17,532-516	18-21,515-512[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUGUUAAUUAUAUAUUAUAUG&UAUAUAAUAUGUAAUUAUUGU	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN1097_c3_g1_523_TPlot.pdf
TRINITY_DN1097_c3_g1:526	si_a463	TRINITY_DN1097_c3_g1	515	536	526	-19.70	-14.50	0.736040609137056	4.5	1-4,536-533;5-20,531-516	x-x,532-532[BULt];21-21,515-515[UP3]	.((((((((((((((((.((((&))))-)))))))))))))))).	UUAAUUAUAUAUUAUAUGAUGA&UUAU-AUAUAAUAUGUAAUUAU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1097_c3_g1_526_TPlot.pdf
TRINITY_DN1097_c3_g1:527	si_a462	TRINITY_DN1097_c3_g1	516	537	527	-21.20	-14.40	0.679245283018868	4.5	2-5,536-533;6-21,531-516	1-1,537-537[UP5];x-x,532-532[BULt]	((((((((((((((((.((((.&.))))-))))))))))))))))	UAAUUAUAUAUUAUAUGAUGAA&GUUAU-AUAUAAUAUGUAAUUA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN1097_c3_g1_527_TPlot.pdf
TRINITY_DN10981_c0_g1:540	si_a783	TRINITY_DN10981_c0_g1	529	550	540	-24.70	-19.80	0.801619433198381	7	2-9,549-542;11-21,539-529	1-1,550-550[UP5];10-10,541-540[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GAAUGGAAAAAAGAGAAGGGUG&AACUCUUCU-AUUUUUCUAUUU	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN10981_c0_g1_540_TPlot.pdf
TRINITY_DN10981_c0_g1:543	si_a789	TRINITY_DN10981_c0_g1	530	552	543	-24.80	-16.30	0.657258064516129	12	1-11,552-542;13-19,538-532	12-12,541-539[AILt];20-21,531-530[UP3]	..(((((((...(((((((((((&)))))))))))--.)))))))..	AAUGGAAAAAAGAGAAGGGUGGA&UCUAUUUUUCU--AUUUUCCAAU	3	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN10981_c0_g1_543_TPlot.pdf
TRINITY_DN10981_c0_g1:545	si_a779	TRINITY_DN10981_c0_g1	533	554	545	-27.00	-18.20	0.674074074074074	6.5	1-4,554-551;6-13,549-542;15-21,539-533	5-5,550-550[SIL];14-14,541-540[AILt]	(((((((..((((((((.((((&)))).))))))))-.)))))))	GGAAAAAAGAGAAGGGUGGAGU&AUUCAACUCUUCU-AUUUUUCU	4	0.999991909822843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN10981_c0_g1_545_TPlot.pdf
TRINITY_DN10986_c0_g1:2200	si_s47	TRINITY_DN10986_c0_g1	2189	2209	2200	-26.30	-18.80	0.714828897338403	8	3-17,2207-2193	1-2,2209-2208[UP5];18-21,2192-2189[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUUCUUGAAAUCCAAUUGGA&AAUAAUUGGAUUUCAAGUUAG	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN10986_c0_g1_2200_TPlot.pdf
TRINITY_DN10986_c0_g1:2203	si_s44	TRINITY_DN10986_c0_g1	2192	2212	2203	-24.70	-18.80	0.761133603238866	11	6-20,2207-2193	1-5,2212-2208[UP5];21-21,2192-2192[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UCUUGAAAUCCAAUUGGAAAC&UUUAAUAAUUGGAUUUCAAGU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN10986_c0_g1_2203_TPlot.pdf
TRINITY_DN10986_c0_g1:2205	si_s42	TRINITY_DN10986_c0_g1	2194	2214	2205	-24.90	-16.20	0.650602409638554	14	8-21,2207-2194	1-7,2214-2208[UP5]	((((((((((((((.......&.......))))))))))))))	UUGAAAUCCAAUUGGAAACCG&UCUUUAAUAAUUGGAUUUCAA	3	0.999816563307628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN10986_c0_g1_2205_TPlot.pdf
TRINITY_DN10987_c0_g1:2904	si_a8	TRINITY_DN10987_c0_g1	2893	2913	2904	-29.50	-19.50	0.661016949152542	6	2-20,2912-2894	1-1,2913-2913[UP5];21-21,2893-2893[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGAAUAGGUUUUUUUUUUAAA&AUUGAAGAGAAAGCCUAUUUA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN10987_c0_g1_2904_TPlot.pdf
TRINITY_DN10988_c0_g1:366	si_a406	TRINITY_DN10988_c0_g1	355	377	366	-19.80	-13.70	0.691919191919192	7	1-6,377-372;7-18,369-358	x-x,371-370[BULt];19-21,357-355[UP3]	...((((((((((((..((((((&))))))--))))))))))))...	CCAAAAUAUAAACAAUUAACAAU&AUUGUU--UUGUUUAUAUUUAAA	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN10988_c0_g1_366_TPlot.pdf
TRINITY_DN10988_c0_g1:367	si_a405	TRINITY_DN10988_c0_g1	356	378	367	-19.80	-13.90	0.702020202020202	7	2-7,377-372;8-19,369-358	1-1,378-378[UP5];x-x,371-370[BULt];20-21,357-356[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	CAAAAUAUAAACAAUUAACAAUA&AAUUGUU--UUGUUUAUAUUUAA	3	0.999999999999321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN10988_c0_g1_367_TPlot.pdf
TRINITY_DN10988_c4_g1:128	si_a405	TRINITY_DN10988_c4_g1	117	139	128	-19.80	-14.00	0.707070707070707	8	2-7,138-133;8-19,130-119	1-1,139-139[UP5];x-x,132-131[BULt];20-21,118-117[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	CAAAAUAUAAACAAUUAACAGUG&AAUUGUU--UUGUUUAUAUUUAA	4	0.999999999987704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN10988_c4_g1_128_TPlot.pdf
TRINITY_DN1098_c0_g1:2522	si_a348	TRINITY_DN1098_c0_g1	2511	2531	2522	-21.10	-14.50	0.687203791469194	8.5	1-1,2531-2531;3-16,2529-2516	2-2,2530-2530[SIL];17-21,2515-2511[UP3]	.....((((((((((((((.(&).)))))))))))))).....	UUUAGGGAAUUGAUAUUUUGG&CGAAAAUAUUAAUUCUAUUUU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN1098_c0_g1_2522_TPlot.pdf
TRINITY_DN1098_c0_g3:2111	si_a850	TRINITY_DN1098_c0_g3	2100	2120	2111	-29.00	-19.00	0.655172413793103	8	1-15,2120-2106	16-21,2105-2100[UP3]	......(((((((((((((((&)))))))))))))))......	CACAAUGUUUCAGGUUAGCAG&UUGCUAACUUGAAAUCCAAUU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN1098_c0_g3_2111_TPlot.pdf
TRINITY_DN1098_c0_g3:888	si_s246	TRINITY_DN1098_c0_g3	877	904	888	-31.70	-20.80	0.65615141955836	22.5	3-9,902-896;11-20,887-878	1-2,904-903[UP5];10-10,895-888[AILt];21-21,877-877[UP3]	.((((((((((........(((((((..&..)))))))-------.)))))))))).	CUAUGUCGGGAUCGGUAGUGUGCCUGGC&AAUAGGCAU-------UUCCCGAUAUAU	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN1098_c0_g3_888_TPlot.pdf
TRINITY_DN10992_c0_g1:306	si_s898	TRINITY_DN10992_c0_g1	295	320	306	-30.70	-20.50	0.667752442996743	15.5	1-4,320-317;5-18,311-298	x-x,316-312[BULt];19-21,297-295[UP3]	...((((((((((((((.....((((&))))-----))))))))))))))...	ACCGGAGUUGAAGAGGAUCAAAAGCU&GGCU-----UUCUCUUCAAUUUCAAU	4	0.999999904387963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN10992_c0_g1_306_TPlot.pdf
TRINITY_DN10992_c0_g1:307	si_a770	TRINITY_DN10992_c0_g1	296	317	307	-28.70	-18.80	0.655052264808362	9.5	1-8,317-310;11-19,306-298	9-10,309-307[AILt];20-21,297-296[UP3]	..(((((((((...((((((((&))))))))-..)))))))))..	CCGGAGUUGAAGAGGAUCAAAA&UUUUGAUU-GAUUCAACUCUUC	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN10992_c0_g1_307_TPlot.pdf
TRINITY_DN10992_c0_g1:311	si_a767	TRINITY_DN10992_c0_g1	299	320	311	-30.10	-22.50	0.747508305647841	7.5	1-11,320-310;14-21,306-299	12-13,309-307[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	GAGUUGAAGAGGAUCAAAAGCU&GGUUUUUGAUU-GAUUCAACUC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN10992_c0_g1_311_TPlot.pdf
TRINITY_DN10992_c0_g1:315	si_a763	TRINITY_DN10992_c0_g1	303	324	315	-28.80	-19.60	0.680555555555556	5.5	1-15,324-310;18-21,306-303	16-17,309-307[AILt]	((((...(((((((((((((((&)))))))))))))))-..))))	UGAAGAGGAUCAAAAGCUCAAA&UUUGGGUUUUUGAUU-GAUUCA	2	0.99968568171648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN10992_c0_g1_315_TPlot.pdf
TRINITY_DN10993_c0_g1:19	si_s874	TRINITY_DN10993_c0_g1	8	28	19	-28.00	-18.70	0.667857142857143	7	1-14,28-15;16-19,13-10	15-15,14-14[SIL];20-21,9-8[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UGGUUUCUGGUUUUGAGAUCG&CGGUCUUAGAACUAAAAAUAA	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN10993_c0_g1_19_TPlot.pdf
TRINITY_DN10993_c0_g1:390	si_s1	TRINITY_DN10993_c0_g1	379	399	390	-18.70	-13.40	0.716577540106952	8.5	2-6,398-394;8-19,392-381	1-1,399-399[UP5];7-7,393-393[SIL];20-21,380-379[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	UUGUGAUGAGUAAUCUGAGAG&UUUUUAUAUUACUUAUUAUUA	4	0.999907570240935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN10993_c0_g1_390_TPlot.pdf
TRINITY_DN10993_c0_g1:495	si_a667	TRINITY_DN10993_c0_g1	484	504	495	-32.10	-21.88	0.681619937694704	8.5	2-8,503-497;10-16,495-489;20-21,485-484	1-1,504-504[UP5];9-9,496-496[SIL];17-19,488-486[SIL]	((...(((((((.(((((((.&.))))))).)))))))...))	UGUGGGAGGAAUGGAUGGGCU&UGCCUAUUGAUUCCUUAUUCA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN10993_c0_g1_495_TPlot.pdf
TRINITY_DN10993_c0_g1:498	si_a664	TRINITY_DN10993_c0_g1	487	507	498	-29.60	-21.70	0.733108108108108	13.5	5-11,503-497;13-19,495-489	1-4,507-504[UP5];12-12,496-496[SIL];20-21,488-487[UP3]	..(((((((.(((((((....&....))))))).)))))))..	GGGAGGAAUGGAUGGGCUGGG&AAAUGCCUAUUGAUUCCUUAU	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN10993_c0_g1_498_TPlot.pdf
TRINITY_DN10998_c0_g1:174	si_a896	TRINITY_DN10998_c0_g1	163	183	174	-21.60	-14.70	0.680555555555555	9	3-16,181-168	1-2,183-182[UP5];17-21,167-163[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUGGUUUACUUAUUAUUGCCU&UAGUAAUAAUAAGUAAUAUAA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN10998_c0_g1_174_TPlot.pdf
TRINITY_DN10998_c0_g1:715	si_s26	TRINITY_DN10998_c0_g1	704	724	715	-26.70	-17.40	0.651685393258427	9.5	4-14,721-711;16-18,709-707	1-3,724-722[UP5];15-15,710-710[SIL];19-21,706-704[UP3]	...(((.(((((((((((...&...))))))))))).)))...	UGUGGUAUAGUUGCAAUCCAA&AUUGAUUGCAACUAAAUCUUU	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN10998_c0_g1_715_TPlot.pdf
TRINITY_DN1099_c0_g1:101	si_s884	TRINITY_DN1099_c0_g1	90	110	101	-26.30	-21.00	0.798479087452471	7	2-17,109-94	1-1,110-110[UP5];18-21,93-90[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUUCGCCUAUUUGUUUUUGGG&ACUAAAAAUAAAUAGGCUUUC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s884_TRINITY_DN1099_c0_g1_101_TPlot.pdf
TRINITY_DN1099_c0_g1:102	si_s883	TRINITY_DN1099_c0_g1	91	111	102	-24.30	-21.00	0.864197530864197	8	3-18,109-94	1-2,111-110[UP5];19-21,93-91[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCGCCUAUUUGUUUUUGGGU&AACUAAAAAUAAAUAGGCUUU	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN1099_c0_g1_102_TPlot.pdf
TRINITY_DN1099_c0_g1:103	si_s882	TRINITY_DN1099_c0_g1	92	112	103	-26.30	-21.00	0.798479087452471	9	4-19,109-94	1-3,112-110[UP5];20-21,93-92[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCGCCUAUUUGUUUUUGGGUG&GAACUAAAAAUAAAUAGGCUU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN1099_c0_g1_103_TPlot.pdf
TRINITY_DN1099_c0_g1:105	si_s880	TRINITY_DN1099_c0_g1	94	114	105	-26.70	-20.70	0.775280898876405	10.5	6-21,109-94	1-5,114-110[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCCUAUUUGUUUUUGGGUGUU&UAGAACUAAAAAUAAAUAGGC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s880_TRINITY_DN1099_c0_g1_105_TPlot.pdf
TRINITY_DN1099_c0_g1:106	si_s879	TRINITY_DN1099_c0_g1	95	115	106	-24.30	-17.30	0.711934156378601	12.5	7-21,109-95	1-6,115-110[UP5]	(((((((((((((((......&......)))))))))))))))	CCUAUUUGUUUUUGGGUGUUA&UUAGAACUAAAAAUAAAUAGG	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s879_TRINITY_DN1099_c0_g1_106_TPlot.pdf
TRINITY_DN1099_c0_g1:1118	si_a300	TRINITY_DN1099_c0_g1	1107	1127	1118	-28.20	-20.60	0.730496453900709	15	8-19,1120-1109	1-7,1127-1121[UP5];20-21,1108-1107[UP3]	..((((((((((((.......&.......))))))))))))..	ACUCCAAGCGAAUCCUGUUAG&UAAAAAAGAUUCGCUUGGAUU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN1099_c0_g1_1118_TPlot.pdf
TRINITY_DN1099_c0_g1:1663	si_s484	TRINITY_DN1099_c0_g1	1649	1672	1663	-20.50	-14.04	0.684878048780488	6	1-13,1672-1660;15-21,1655-1649	14-14,1659-1656[AILt]	(((((((....(((((((((((((&)))))))))))))---.)))))))	UUAUAUUGUCAAAAUGAAUAUGGG&CCUAUAUUUAUUU---AAAUAUAA	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN1099_c0_g1_1663_TPlot.pdf
TRINITY_DN1099_c0_g1:99	si_s886	TRINITY_DN1099_c0_g1	88	108	99	-26.50	-17.40	0.656603773584906	7.5	1-15,108-94	16-21,93-88[UP3]	......(((((((((((((((&)))))))))))))))......	GACUUCGCCUAUUUGUUUUUG&UAAAAAUAAAUAGGCUUUCUC	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN1099_c0_g1_99_TPlot.pdf
TRINITY_DN109_c0_g1:1220	si_a475	TRINITY_DN109_c0_g1	1209	1230	1220	-23.50	-15.80	0.672340425531915	5	1-6,1230-1225;7-20,1223-1210	x-x,1224-1224[BULt];21-21,1209-1209[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	AUUUGUAUAAUAAUAUAUUACA&UGUAAU-UAUUGUUAUAUAGAA	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN109_c0_g1_1220_TPlot.pdf
TRINITY_DN109_c0_g1:1221	si_a474	TRINITY_DN109_c0_g1	1210	1231	1221	-23.60	-15.60	0.661016949152542	5	2-7,1230-1225;8-21,1223-1210	1-1,1231-1231[UP5];x-x,1224-1224[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UUUGUAUAAUAAUAUAUUACAA&AUGUAAU-UAUUGUUAUAUAGA	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN109_c0_g1_1221_TPlot.pdf
TRINITY_DN10_c0_g1:1048	si_s71	TRINITY_DN10_c0_g1	1037	1058	1048	-25.70	-19.70	0.766536964980545	11	1-6,1058-1053;11-21,1047-1037	7-10,1052-1048[AILt]	(((((((((((.....((((((&))))))-....)))))))))))	AGGAAAGAAGAUCUAUUAGAAG&CUUCUA-UUUUUUUUCUUUCCU	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN10_c0_g1_1048_TPlot.pdf
TRINITY_DN10_c0_g1:1266	si_a871	TRINITY_DN10_c0_g1	1253	1275	1266	-26.40	-19.30	0.731060606060606	12.5	5-11,1271-1265;12-21,1262-1253	1-4,1275-1272[UP5];x-x,1264-1263[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	GAUUGCGACUCGGAAUCUUGCCA&AUUAAAGAUUU--AGUUGCAAUC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN10_c0_g1_1266_TPlot.pdf
TRINITY_DN11004_c0_g1:359	si_a321	TRINITY_DN11004_c0_g1	348	368	359	-26.70	-17.50	0.655430711610487	9.5	3-17,366-352	1-2,368-367[UP5];18-21,351-348[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAACUAGAAAGAUCGUGGAAC&UAUCCAUGAUUUUUUUAUUCC	2	0.999482891835849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN11004_c0_g1_359_TPlot.pdf
TRINITY_DN11005_c0_g1:650	si_s52	TRINITY_DN11005_c0_g1	639	659	650	-31.30	-22.00	0.702875399361022	8	3-10,657-650;12-17,648-643;20-21,640-639	1-2,659-658[UP5];11-11,649-649[SIL];18-19,642-641[SIL]	((..((((((.((((((((..&..)))))))).))))))..))	AGGGGCUGGCAUGAAAUCCCU&UUGGAUUUCAAGUUAGCAACU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN11005_c0_g1_650_TPlot.pdf
TRINITY_DN11005_c0_g1:653	si_s49	TRINITY_DN11005_c0_g1	642	662	653	-29.30	-19.50	0.665529010238908	12	6-13,657-650;15-20,648-643	1-5,662-658[UP5];14-14,649-649[SIL];21-21,642-642[UP3]	.((((((.((((((((.....&.....)))))))).)))))).	GGCUGGCAUGAAAUCCCUGAA&UAAUUGGAUUUCAAGUUAGCA	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN11005_c0_g1_653_TPlot.pdf
TRINITY_DN11005_c0_g1:654	si_s48	TRINITY_DN11005_c0_g1	643	663	654	-28.80	-19.10	0.663194444444445	13	7-14,657-650;16-21,648-643	1-6,663-658[UP5];15-15,649-649[SIL]	((((((.((((((((......&......)))))))).))))))	GCUGGCAUGAAAUCCCUGAAG&AUAAUUGGAUUUCAAGUUAGC	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN11005_c0_g1_654_TPlot.pdf
TRINITY_DN11007_c0_g2:118	si_s521	TRINITY_DN11007_c0_g2	107	127	118	-23.90	-18.00	0.753138075313808	9	2-16,126-112	1-1,127-127[UP5];17-21,111-107[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGACGGAUUUCGAAUUGGGGC&UUCUUAAUUCGAAAUCAUUUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN11007_c0_g2_118_TPlot.pdf
TRINITY_DN1100_c0_g1:6931	si_s631	TRINITY_DN1100_c0_g1	6918	6940	6931	-36.00	-24.20	0.672222222222222	14.5	7-16,6934-6925;17-21,6922-6918	1-6,6940-6935[UP5];x-x,6924-6923[BULt]	(((((..((((((((((......&......))))))))))--)))))	GGCAAAGGCGCCUACGGCAUUGU&AUCUUUUCGUAGGCGU--UUGCC	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN1100_c0_g1_6931_TPlot.pdf
TRINITY_DN1100_c0_g1:8425	si_s7	TRINITY_DN1100_c0_g1	8414	8434	8425	-21.70	-16.80	0.774193548387097	4.5	2-13,8433-8422;15-20,8420-8415	1-1,8434-8434[UP5];14-14,8421-8421[SIL];21-21,8414-8414[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UUGUAGUUAUAAUGAGUAAUU&UAUUACUUAUUAUUACUAUAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN1100_c0_g1_8425_TPlot.pdf
TRINITY_DN11010_c0_g1:406	si_s525	TRINITY_DN11010_c0_g1	395	415	406	-24.00	-16.10	0.670833333333333	14.5	7-21,409-395	1-6,415-410[UP5]	(((((((((((((((......&......)))))))))))))))	GUCAGGGGUGGUUUCAGCUAU&UAAUUCGAAAUCAUUUUUGAU	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN11010_c0_g1_406_TPlot.pdf
TRINITY_DN11011_c0_g1:4191	si_s76	TRINITY_DN11011_c0_g1	4180	4200	4191	-23.60	-15.90	0.673728813559322	14	7-12,4194-4189;14-21,4187-4180	1-6,4200-4195[UP5];13-13,4188-4188[SIL]	((((((((.((((((......&......)))))).))))))))	AAGAAAGGUGAGAGAUGUCUA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11011_c0_g1_4191_TPlot.pdf
TRINITY_DN11015_c0_g3:1520	si_s809	TRINITY_DN11015_c0_g3	1509	1527	1520	-28.50	-19.40	0.680701754385965	7.5	1-7,1527-1521;10-18,1520-1512	8-9,x-x[BULq];19-21,1511-1509[UP3]	...(((((((((--(((((((&)))))))..)))))))))...	CUAAAGAGAAGG--ACGAAGA&UCUUCGUUACCUUUUCUUAAU	2	0.999854708090646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN11015_c0_g3_1520_TPlot.pdf
TRINITY_DN11015_c0_g3:1521	si_s808	TRINITY_DN11015_c0_g3	1510	1528	1521	-28.60	-19.40	0.678321678321678	7.5	2-8,1527-1521;11-19,1520-1512	1-1,1528-1528[UP5];9-10,x-x[BULq];20-21,1511-1510[UP3]	..(((((((((--(((((((.&.)))))))..)))))))))..	UAAAGAGAAGG--ACGAAGAA&AUCUUCGUUACCUUUUCUUAA	4	0.999999976019028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN11015_c0_g3_1521_TPlot.pdf
TRINITY_DN11020_c0_g2:713	si_s75	TRINITY_DN11020_c0_g2	703	722	713	-24.00	-17.60	0.733333333333333	7.5	1-16,722-707;19-20,705-704	17-18,706-706[AILq];21-21,703-703[UP3]	.((.-((((((((((((((((&))))))))))))))))..)).	UGAU-GGGAGGAAGAGAGAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999997391484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11020_c0_g2_713_TPlot.pdf
TRINITY_DN11020_c0_g2:717	si_s71	TRINITY_DN11020_c0_g2	706	726	717	-25.70	-18.20	0.708171206225681	9	1-2,726-725;5-20,722-707	3-4,724-723[SIL];21-21,706-706[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	UGGGAGGAAGAGAGAUAUCAG&CUUCUAUUUUUUUUCUUUCCU	2	0.99999999685607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN11020_c0_g2_717_TPlot.pdf
TRINITY_DN11020_c0_g2:911	si_a6	TRINITY_DN11020_c0_g2	894	920	911	-29.10	-19.10	0.656357388316151	19	4-10,917-911;11-20,904-895	1-3,920-918[UP5];x-x,910-905[BULt];21-21,894-894[UP3]	.((((((((((......(((((((...&...)))))))------)))))))))).	UAUAGGCUUUCCGAGCCUCUUCAGCCG&AAAUUGAAGA------GAAAGCCUAUU	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN11020_c0_g2_911_TPlot.pdf
TRINITY_DN11022_c0_g4:97	si_a847	TRINITY_DN11022_c0_g4	87	104	97	-31.20	-20.60	0.66025641025641	9	2-8,103-97;12-21,96-87	1-1,104-104[UP5];9-11,x-x[BULq]	((((((((((---(((((((.&.)))))))...))))))))))	UGGAUUUCAA---AGCGGCUG&AAGUUGCUAACUUGAAAUCCA	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN11022_c0_g4_97_TPlot.pdf
TRINITY_DN11022_c0_g7:277	si_a459	TRINITY_DN11022_c0_g7	266	286	277	-23.20	-15.10	0.650862068965517	3.5	1-7,286-280;9-14,278-273;16-21,271-266	8-8,279-279[SIL];15-15,272-272[SIL]	((((((.((((((.(((((((&))))))).)))))).))))))	UUACAUUUUAUAUUUAACAAU&GUUGUUAUAUAUAAUAUGUAA	4	0.999970907602407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN11022_c0_g7_277_TPlot.pdf
TRINITY_DN11023_c0_g1:1886	si_s66	TRINITY_DN11023_c0_g1	1875	1895	1886	-26.30	-19.50	0.741444866920152	6	3-13,1893-1883;15-21,1881-1875	1-2,1895-1894[UP5];14-14,1882-1882[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GGAAAAGUAGUAGAAGUUGGA&AGCAACUUCUAUUUUUUUUCU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN11023_c0_g1_1886_TPlot.pdf
TRINITY_DN11023_c0_g1:714	si_s490	TRINITY_DN11023_c0_g1	703	723	714	-17.80	-11.60	0.651685393258427	13.5	7-19,717-705	1-6,723-718[UP5];20-21,704-703[UP3]	..(((((((((((((......&......)))))))))))))..	CCUUGUUUGUAUUUAUAACCU&UUUAUUUAAAUAUAAACAAAA	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN11023_c0_g1_714_TPlot.pdf
TRINITY_DN11024_c0_g1:1277	si_a475	TRINITY_DN11024_c0_g1	1265	1286	1277	-23.50	-15.70	0.668085106382979	7	1-15,1286-1272;18-21,1268-1265	16-17,1271-1269[AILt]	((((...(((((((((((((((&)))))))))))))))-..))))	UUCUUCAGUGAUAAUAGUUGCA&UGUAAUUAUUGUUAU-AUAGAA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN11024_c0_g1_1277_TPlot.pdf
TRINITY_DN11024_c0_g1:1283	si_a469	TRINITY_DN11024_c0_g1	1272	1292	1283	-21.10	-13.90	0.658767772511848	14.5	7-21,1286-1272	1-6,1292-1287[UP5]	(((((((((((((((......&......)))))))))))))))	GUGAUAAUAGUUGCACUUGUG&AUAAUAUGUAAUUAUUGUUAU	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN11024_c0_g1_1283_TPlot.pdf
TRINITY_DN11024_c0_g1:935	si_s624	TRINITY_DN11024_c0_g1	920	944	935	-37.90	-28.50	0.751978891820581	7	1-13,944-932;14-19,927-922	x-x,931-928[BULt];20-21,921-920[UP3]	..((((((....(((((((((((((&)))))))))))))----))))))..	AACUACGACGAUAGAGAUCGCUUGG&CCAAGCGAUCUUU----UCGUAGGC	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN11024_c0_g1_935_TPlot.pdf
TRINITY_DN11024_c0_g1:936	si_s623	TRINITY_DN11024_c0_g1	921	945	936	-36.40	-29.90	0.821428571428571	5.5	1-14,945-932;15-20,927-922	x-x,931-928[BULt];21-21,921-921[UP3]	.((((((....((((((((((((((&))))))))))))))----)))))).	ACUACGACGAUAGAGAUCGCUUGGA&UCCAAGCGAUCUUU----UCGUAGG	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN11024_c0_g1_936_TPlot.pdf
TRINITY_DN11024_c0_g1:942	si_s617	TRINITY_DN11024_c0_g1	931	951	942	-28.30	-24.10	0.851590106007067	10.5	6-20,946-932	1-5,951-947[UP5];21-21,931-931[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAGAGAUCGCUUGGAUGGCUC&UUUAAAUCCAAGCGAUCUUUU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN11024_c0_g1_942_TPlot.pdf
TRINITY_DN11025_c0_g1:145	si_a319	TRINITY_DN11025_c0_g1	134	154	145	-22.40	-17.70	0.790178571428571	8.5	1-18,154-137	19-21,136-134[UP3]	...((((((((((((((((((&))))))))))))))))))...	GACAGAGGAGUUAUGGGUGAA&UUUAUCCAUGAUUUUUUUAUU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN11025_c0_g1_145_TPlot.pdf
TRINITY_DN11031_c0_g1:374	si_a123	TRINITY_DN11031_c0_g1	363	383	374	-26.60	-17.68	0.664661654135338	6	2-13,382-371;17-20,367-364	1-1,383-383[UP5];14-16,370-368[SIL];21-21,363-363[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	CUACUUGGGCUAUAAAACGAU&CUUGUUUUAUAGCAAUAGUAA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN11031_c0_g1_374_TPlot.pdf
TRINITY_DN11034_c0_g1:2130	si_s300	TRINITY_DN11034_c0_g1	2120	2139	2130	-29.70	-20.90	0.703703703703704	6	1-6,2139-2134;8-13,2132-2127;16-21,2125-2120	7-7,2133-2133[SIL];14-15,2126-2126[AILq]	((((((.-((((((.((((((&)))))).))))))..))))))	CGGGAUG-UCGCAAGUCCAGU&AUUGGAAUUGCGAAAAUUCUG	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s300_TRINITY_DN11034_c0_g1_2130_TPlot.pdf
TRINITY_DN11034_c0_g1:2131	si_s299	TRINITY_DN11034_c0_g1	2121	2140	2131	-30.00	-19.80	0.66	6.5	1-7,2140-2134;9-14,2132-2127;17-21,2125-2121	8-8,2133-2133[SIL];15-16,2126-2126[AILq]	(((((.-((((((.(((((((&))))))).))))))..)))))	GGGAUG-UCGCAAGUCCAGUU&GAUUGGAAUUGCGAAAAUUCU	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s299_TRINITY_DN11034_c0_g1_2131_TPlot.pdf
TRINITY_DN11034_c0_g1:2132	si_s298	TRINITY_DN11034_c0_g1	2122	2141	2132	-30.80	-21.10	0.685064935064935	6.5	1-8,2141-2134;10-15,2132-2127;18-21,2125-2122	9-9,2133-2133[SIL];16-17,2126-2126[AILq]	((((.-((((((.((((((((&)))))))).))))))..))))	GGAUG-UCGCAAGUCCAGUUG&CGAUUGGAAUUGCGAAAAUUC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN11034_c0_g1_2132_TPlot.pdf
TRINITY_DN11034_c0_g1:2151	si_a303	TRINITY_DN11034_c0_g1	2140	2162	2151	-28.40	-18.70	0.658450704225352	14.5	5-9,2158-2154;10-19,2151-2142	1-4,2162-2159[UP5];x-x,2153-2152[BULt];20-21,2141-2140[UP3]	..((((((((((..(((((....&....)))))--))))))))))..	UGAGAUCCAAGCUCGGAUCAACG&AAAAGAUUC--GCUUGGAUUUAU	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN11034_c0_g1_2151_TPlot.pdf
TRINITY_DN11034_c0_g1:2262	si_a503	TRINITY_DN11034_c0_g1	2252	2271	2262	-32.10	-22.10	0.688473520249221	7.5	3-16,2269-2256;20-21,2253-2252	1-2,2271-2270[UP5];17-19,2255-2254[AILq]	((..-((((((((((((((..&..))))))))))))))...))	CAGA-CAGGGGAGACGAAACA&UUUUUCGUCUUCCUUGGAAUG	4	0.999951258254274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN11034_c0_g1_2262_TPlot.pdf
TRINITY_DN11034_c0_g1:2267	si_a498	TRINITY_DN11034_c0_g1	2256	2285	2267	-33.50	-22.48	0.671044776119403	23	2-6,2284-2280;8-21,2269-2256	1-1,2285-2285[UP5];7-7,2279-2270[AILt]	((((((((((((((..........(((((.&.)))))---------.))))))))))))))	CAGGGGAGACGAAACAGAAAGUGUACGGCU&UGUCGU---------UUUUCGUCUUCCUUG	2	0.999999435738506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN11034_c0_g1_2267_TPlot.pdf
TRINITY_DN11034_c0_g1:2316	si_a247	TRINITY_DN11034_c0_g1	2306	2325	2316	-39.50	-25.80	0.653164556962025	6	1-9,2325-2317;11-12,2315-2314;15-20,2312-2307	10-10,2316-2316[SIL];13-14,2313-2313[AILq];21-21,2306-2306[UP3]	.((((((.-((.(((((((((&))))))))).))..)))))).	CCGGUGCC-UCUGGGGAUCGA&UCGAUCCCCCGAUUGUAUCGA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a247_TRINITY_DN11034_c0_g1_2316_TPlot.pdf
TRINITY_DN11034_c0_g1:2317	si_a246	TRINITY_DN11034_c0_g1	2307	2326	2317	-38.60	-25.10	0.650259067357513	6	2-10,2325-2317;12-13,2315-2314;16-21,2312-2307	1-1,2326-2326[UP5];11-11,2316-2316[SIL];14-15,2313-2313[AILq]	((((((.-((.(((((((((.&.))))))))).))..))))))	CGGUGCC-UCUGGGGAUCGAC&UUCGAUCCCCCGAUUGUAUCG	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a246_TRINITY_DN11034_c0_g1_2317_TPlot.pdf
TRINITY_DN11040_c0_g1:1539	si_s549	TRINITY_DN11040_c0_g1	1528	1548	1539	-20.50	-13.70	0.668292682926829	12	7-21,1542-1528	1-6,1548-1543[UP5]	(((((((((((((((......&......)))))))))))))))	AAGUGUUAAUUCUAUAAGAAA&AUCAAAAUAGAAUUAAUAUUU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN11040_c0_g1_1539_TPlot.pdf
TRINITY_DN11042_c0_g1:195	si_a64	TRINITY_DN11042_c0_g1	184	205	195	-29.40	-19.20	0.653061224489796	5.5	1-4,205-202;5-11,200-194;13-21,192-184	x-x,201-201[BULt];12-12,193-193[SIL]	(((((((((.(((((((.((((&))))-))))))).)))))))))	AAAUAAUUUUAGAGAAGACGAG&CUCG-CUUCUUUCAAAUUGUUU	4	0.999999945240273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN11042_c0_g1_195_TPlot.pdf
TRINITY_DN11042_c1_g1:1172	si_s443	TRINITY_DN11042_c1_g1	1161	1180	1172	-23.50	-15.70	0.668085106382979	5	1-4,1180-1177;6-8,1176-1174;10-21,1172-1161	5-5,x-x[BULq];9-9,1173-1173[SIL]	((((((((((((.(((-((((&)))).))).))))))))))))	UUGUUGUUAUAUUUAA-GUGU&ACAUAUUAUAUAUAACAACAA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN11042_c1_g1_1172_TPlot.pdf
TRINITY_DN11042_c1_g1:1174	si_s441	TRINITY_DN11042_c1_g1	1163	1182	1174	-23.20	-15.50	0.668103448275862	5	1-6,1182-1177;8-10,1176-1174;12-21,1172-1163	7-7,x-x[BULq];11-11,1173-1173[SIL]	((((((((((.(((-((((((&)))))).))).))))))))))	GUUGUUAUAUUUAA-GUGUAA&UUACAUAUUAUAUAUAACAAC	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN11042_c1_g1_1174_TPlot.pdf
TRINITY_DN11052_c0_g1:404	si_s71	TRINITY_DN11052_c0_g1	393	413	404	-25.70	-19.00	0.739299610894942	8	2-11,412-403;13-20,401-394	1-1,413-413[UP5];12-12,402-402[SIL];21-21,393-393[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UGGAAGGAGCAGAAGUAGGAA&CUUCUAUUUUUUUUCUUUCCU	4	0.99999997791958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN11052_c0_g1_404_TPlot.pdf
TRINITY_DN11057_c0_g1:1148	si_s125	TRINITY_DN11057_c0_g1	1137	1157	1148	-27.20	-17.90	0.658088235294118	7	2-16,1156-1142	1-1,1157-1157[UP5];17-21,1141-1137[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAAUUUUCAACUUUUCUAUUA&AAAUAGAAGAGUUGAAUCAAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN11057_c0_g1_1148_TPlot.pdf
TRINITY_DN11057_c0_g1:1253	si_a404	TRINITY_DN11057_c0_g1	1242	1261	1253	-21.70	-14.40	0.663594470046083	5	1-9,1261-1253;11-21,1252-1242	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	UAAAUAUAGAU-AAACGAUUU&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN11057_c0_g1_1253_TPlot.pdf
TRINITY_DN11060_c0_g1:110	si_s830	TRINITY_DN11060_c0_g1	99	119	110	-23.90	-19.90	0.832635983263598	5.5	4-21,116-99	1-3,119-117[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUUUCAAAUUGUUUUUCGAA&AAUGAAAAACAAUUUGAAAGA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN11060_c0_g1_110_TPlot.pdf
TRINITY_DN11066_c0_g1:4856	si_a409	TRINITY_DN11066_c0_g1	4845	4863	4856	-19.50	-12.90	0.661538461538462	6.5	1-7,4863-4857;10-19,4856-4847	8-9,x-x[BULq];20-21,4846-4845[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	AGAUUUAGAUAU--ACAAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999990944282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN11066_c0_g1_4856_TPlot.pdf
TRINITY_DN11068_c3_g2:188	si_a839	TRINITY_DN11068_c3_g2	177	197	188	-26.50	-17.60	0.664150943396226	15	9-21,189-177	1-8,197-190[UP5]	(((((((((((((........&........)))))))))))))	AAGUUAGCAACUUAUGAUGGA&AAAAAUAGAAGUUGCUAACUU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN11068_c3_g2_188_TPlot.pdf
TRINITY_DN11069_c0_g1:794	si_a545	TRINITY_DN11069_c0_g1	783	803	794	-28.10	-19.20	0.683274021352313	8	2-10,802-794;13-19,791-785	1-1,803-803[UP5];11-12,793-792[SIL];20-21,784-783[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	UAAAGGAGACCGAUUGAACCU&CGGUUCAAUCUAUUUCUUUAU	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN11069_c0_g1_794_TPlot.pdf
TRINITY_DN11069_c4_g1:207	si_a317	TRINITY_DN11069_c4_g1	196	216	207	-24.30	-15.90	0.654320987654321	4	1-8,216-209;10-13,207-204;15-21,202-196	9-9,208-208[SIL];14-14,203-203[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	UAAAGGAUUCAUUGAUAAAUC&GAUUUAUCCAUGAUUUUUUUA	1	0.254135315229808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN11069_c4_g1_207_TPlot.pdf
TRINITY_DN1106_c0_g2:723	si_a236	TRINITY_DN1106_c0_g2	709	732	723	-35.00	-23.30	0.665714285714286	12.5	1-11,732-722;15-21,715-709	12-14,721-716[AILt]	(((((((......(((((((((((&)))))))))))---...)))))))	GGGGGGUAAUAUUAUUGGUUAUGG&CUAUAAUCAAU---UCGAUCCCCC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN1106_c0_g2_723_TPlot.pdf
TRINITY_DN11074_c0_g1:1363	si_s485	TRINITY_DN11074_c0_g1	1352	1372	1363	-18.10	-12.90	0.712707182320442	6	2-5,1371-1368;7-20,1366-1353	1-1,1372-1372[UP5];6-6,1367-1367[SIL];21-21,1352-1352[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	CUUAUAUUUGAAUAAUUAUGU&CUAUAUUUAUUUAAAUAUAAA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN11074_c0_g1_1363_TPlot.pdf
TRINITY_DN11076_c2_g1:126	si_a554	TRINITY_DN11076_c2_g1	115	138	126	-34.40	-22.50	0.654069767441861	13	1-8,138-131;9-19,127-117	x-x,130-128[BULt];20-21,116-115[UP3]	..(((((((((((...((((((((&))))))))---)))))))))))..	GGUGGGGGGAUAAAGUGGGGGUAG&CUAUUUCU---UUAUCUCCCCGUG	2	0.988673538665862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN11076_c2_g1_126_TPlot.pdf
TRINITY_DN11077_c2_g1:482	si_s81	TRINITY_DN11077_c2_g1	471	498	482	-28.90	-18.90	0.653979238754325	17.5	1-6,498-493;7-19,485-473	x-x,492-486[BULt];20-21,472-471[UP3]	..(((((((((((((.......((((((&))))))-------)))))))))))))..	AAAGGAAGAAAGGAAAUUAGCUAGAGAA&UUUUCU-------UUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN11077_c2_g1_482_TPlot.pdf
TRINITY_DN11078_c0_g1:355	si_a451	TRINITY_DN11078_c0_g1	344	364	355	-23.60	-15.70	0.665254237288135	9.5	2-14,363-351	1-1,364-364[UP5];15-21,350-344[UP3]	.......(((((((((((((.&.))))))))))))).......	GGAACAGAGCAACGAUUAUCG&AGAUAAUUGUUGUUAUAUAUA	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN11078_c0_g1_355_TPlot.pdf
TRINITY_DN1107_c0_g1:3984	si_a450	TRINITY_DN1107_c0_g1	3972	3993	3984	-25.20	-19.70	0.781746031746032	6	1-10,3993-3984;11-18,3982-3975	x-x,3983-3983[BULt];19-21,3974-3972[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UAUUAUGGCAAUCAAUUAUCUC&GAGAUAAUUG-UUGUUAUAUAU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN1107_c0_g1_3984_TPlot.pdf
TRINITY_DN1107_c0_g1:3985	si_a449	TRINITY_DN1107_c0_g1	3973	3994	3985	-25.70	-20.70	0.805447470817121	5	1-11,3994-3984;12-19,3982-3975	x-x,3983-3983[BULt];20-21,3974-3973[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AUUAUGGCAAUCAAUUAUCUCA&UGAGAUAAUUG-UUGUUAUAUA	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN1107_c0_g1_3985_TPlot.pdf
TRINITY_DN1107_c0_g1:3986	si_a448	TRINITY_DN1107_c0_g1	3974	3995	3986	-25.50	-20.70	0.811764705882353	5	2-12,3994-3984;13-20,3982-3975	1-1,3995-3995[UP5];x-x,3983-3983[BULt];21-21,3974-3974[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UUAUGGCAAUCAAUUAUCUCAA&AUGAGAUAAUUG-UUGUUAUAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN1107_c0_g1_3986_TPlot.pdf
TRINITY_DN1107_c0_g1:3988	si_a446	TRINITY_DN1107_c0_g1	3976	3997	3988	-25.50	-19.10	0.749019607843137	7	4-14,3994-3984;15-21,3982-3976	1-3,3997-3995[UP5];x-x,3983-3983[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AUGGCAAUCAAUUAUCUCAAUU&AUAUGAGAUAAUUG-UUGUUAU	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN1107_c0_g1_3988_TPlot.pdf
TRINITY_DN1107_c0_g1:826	si_a556	TRINITY_DN1107_c0_g1	814	838	826	-33.40	-22.10	0.661676646706587	12.5	1-7,838-832;8-14,828-822;15-20,820-815	x-x,831-829[BULt];x-x,821-821[BULt];21-21,814-814[UP3]	.((((((.(((((((...(((((((&)))))))---)))))))-)))))).	CUUACGGAGGAGGUGGAAGAGGAAU&AUUUCUU---UAUCUCC-CCGUGAA	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN1107_c0_g1_826_TPlot.pdf
TRINITY_DN1107_c0_g1:831	si_s77	TRINITY_DN1107_c0_g1	819	840	831	-25.50	-18.70	0.733333333333333	10.5	4-13,837-828;14-21,826-819	1-3,840-838[UP5];x-x,827-827[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GGAGGAGGUGGAAGAGGAAUGC&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1107_c0_g1_831_TPlot.pdf
TRINITY_DN1107_c0_g2:2359	si_a450	TRINITY_DN1107_c0_g2	2347	2368	2359	-25.20	-19.70	0.781746031746032	6	1-10,2368-2359;11-18,2357-2350	x-x,2358-2358[BULt];19-21,2349-2347[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UAUUAUGGCAAUCAAUUAUCUC&GAGAUAAUUG-UUGUUAUAUAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN1107_c0_g2_2359_TPlot.pdf
TRINITY_DN1107_c0_g2:2360	si_a449	TRINITY_DN1107_c0_g2	2348	2369	2360	-25.70	-20.70	0.805447470817121	5	1-11,2369-2359;12-19,2357-2350	x-x,2358-2358[BULt];20-21,2349-2348[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AUUAUGGCAAUCAAUUAUCUCA&UGAGAUAAUUG-UUGUUAUAUA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN1107_c0_g2_2360_TPlot.pdf
TRINITY_DN1107_c0_g2:2361	si_a448	TRINITY_DN1107_c0_g2	2349	2370	2361	-25.50	-20.70	0.811764705882353	5	2-12,2369-2359;13-20,2357-2350	1-1,2370-2370[UP5];x-x,2358-2358[BULt];21-21,2349-2349[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UUAUGGCAAUCAAUUAUCUCAA&AUGAGAUAAUUG-UUGUUAUAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN1107_c0_g2_2361_TPlot.pdf
TRINITY_DN1107_c0_g2:2363	si_a446	TRINITY_DN1107_c0_g2	2351	2372	2363	-25.50	-19.10	0.749019607843137	7	4-14,2369-2359;15-21,2357-2351	1-3,2372-2370[UP5];x-x,2358-2358[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AUGGCAAUCAAUUAUCUCAAUU&AUAUGAGAUAAUUG-UUGUUAU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN1107_c0_g2_2363_TPlot.pdf
TRINITY_DN1107_c0_g2:2364	si_a445	TRINITY_DN1107_c0_g2	2352	2373	2364	-27.30	-18.10	0.663003663003663	9	5-15,2369-2359;16-21,2357-2352	1-4,2373-2370[UP5];x-x,2358-2358[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	UGGCAAUCAAUUAUCUCAAUUU&GAUAUGAGAUAAUUG-UUGUUA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN1107_c0_g2_2364_TPlot.pdf
TRINITY_DN11083_c0_g2:533	si_a316	TRINITY_DN11083_c0_g2	522	543	533	-26.30	-18.00	0.684410646387833	8	1-9,543-535;10-13,533-530;16-19,527-524	x-x,534-534[BULt];14-15,529-528[SIL];20-21,523-522[UP3]	..((((..((((.(((((((((&)))))))))-))))..))))..	GCAGGAUGCAUGUGAUGAAUCC&GGAUUUAUC-CAUGAUUUUUUU	3	0.999977200196488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN11083_c0_g2_533_TPlot.pdf
TRINITY_DN11084_c1_g1:17	si_s70	TRINITY_DN11084_c1_g1	6	26	17	-25.80	-19.80	0.767441860465116	8.5	3-17,24-10;19-21,8-6	1-2,26-25[UP5];18-18,9-9[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GGAUAGAGAGGAGAUGGAAAA&ACUUCUAUUUUUUUUCUUUCC	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN11084_c1_g1_17_TPlot.pdf
TRINITY_DN11084_c1_g1:68	si_s93	TRINITY_DN11084_c1_g1	56	77	68	-34.80	-24.90	0.71551724137931	5.5	1-11,77-67;13-20,64-57	12-12,66-65[AILt];21-21,56-56[UP3]	.((((((((..(((((((((((&)))))))))))-.)))))))).	CAUUCGAAGAAGAAGAAGAAGA&UCUUCUUCUUC-GCUUCGGAUU	2	0.989873797618439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN11084_c1_g1_68_TPlot.pdf
TRINITY_DN11084_c1_g1:69	si_s92	TRINITY_DN11084_c1_g1	57	78	69	-34.90	-25.80	0.739255014326648	3.5	1-12,78-67;14-21,64-57	13-13,66-65[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AUUCGAAGAAGAAGAAGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	2	0.935310264859161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN11084_c1_g1_69_TPlot.pdf
TRINITY_DN11084_c1_g1:70	si_s91	TRINITY_DN11084_c1_g1	58	79	70	-34.70	-24.90	0.717579250720461	3.5	2-13,78-67;15-21,64-58	1-1,79-79[UP5];14-14,66-65[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	UUCGAAGAAGAAGAAGAAGAAG&UUUCUUCUUCUUC-GCUUCGGA	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN11084_c1_g1_70_TPlot.pdf
TRINITY_DN11084_c1_g1:72	si_s83	TRINITY_DN11084_c1_g1	61	81	72	-30.90	-21.90	0.70873786407767	6	1-6,81-76;9-21,73-61	7-8,75-74[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAAGAAGAAGAAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999999981818934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN11084_c1_g1_72_TPlot.pdf
TRINITY_DN11088_c1_g1:1238	si_s500	TRINITY_DN11088_c1_g1	1227	1245	1238	-22.80	-16.20	0.710526315789474	5.5	2-8,1244-1238;11-21,1237-1227	1-1,1245-1245[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	UGUAGAAUUGU--UGUUUAUU&UAUAAACAAAACAAUUCUAUA	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN11088_c1_g1_1238_TPlot.pdf
TRINITY_DN11088_c2_g1:387	si_a410	TRINITY_DN11088_c2_g1	376	396	387	-17.80	-12.60	0.707865168539326	9	2-15,395-382	1-1,396-396[UP5];16-21,381-376[UP3]	......((((((((((((((.&.))))))))))))))......	AGACGCUAAGUAUAAACAGAU&UUUUGUUUAUAUUUAAAUAAA	2	0.99968568171648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN11088_c2_g1_387_TPlot.pdf
TRINITY_DN11088_c2_g1:84	si_s82	TRINITY_DN11088_c2_g1	73	93	84	-28.90	-21.70	0.750865051903114	9	4-9,90-85;11-20,83-74	1-3,93-91[UP5];10-10,84-84[SIL];21-21,73-73[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	UAGAAGAAGAAUGGAGAGUUU&UUUCUUUCCUUUCUUCUUCUU	4	0.999999997574691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11088_c2_g1_84_TPlot.pdf
TRINITY_DN1108_c0_g1:312	si_a766	TRINITY_DN1108_c0_g1	299	321	312	-30.50	-21.10	0.691803278688525	11	1-10,321-312;11-17,309-303	x-x,311-310[BULt];18-21,302-299[UP3]	....(((((((..((((((((((&))))))))))--)))))))....	ACCCGAAUCAGCCUCAGGAACCC&GGGUUUUUGA--UUGAUUCAACU	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN1108_c0_g1_312_TPlot.pdf
TRINITY_DN1108_c0_g1:314	si_a764	TRINITY_DN1108_c0_g1	301	323	314	-28.90	-22.70	0.785467128027682	9.5	1-12,323-312;13-19,309-303	x-x,311-310[BULt];20-21,302-301[UP3]	..(((((((..((((((((((((&))))))))))))--)))))))..	CCGAAUCAGCCUCAGGAACCCGA&UUGGGUUUUUGA--UUGAUUCAA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1108_c0_g1_314_TPlot.pdf
TRINITY_DN1108_c0_g1:315	si_a763	TRINITY_DN1108_c0_g1	302	324	315	-28.80	-23.40	0.8125	6.5	1-13,324-312;14-20,309-303	x-x,311-310[BULt];21-21,302-302[UP3]	.(((((((..(((((((((((((&)))))))))))))--))))))).	CGAAUCAGCCUCAGGAACCCGAA&UUUGGGUUUUUGA--UUGAUUCA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1108_c0_g1_315_TPlot.pdf
TRINITY_DN1108_c0_g1:317	si_a761	TRINITY_DN1108_c0_g1	304	326	317	-30.10	-19.80	0.6578073089701	8.5	3-15,324-312;16-21,309-304	1-2,326-325[UP5];x-x,311-310[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AAUCAGCCUCAGGAACCCGAACA&CCUUUGGGUUUUUGA--UUGAUU	4	0.999999999778771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN1108_c0_g1_317_TPlot.pdf
TRINITY_DN1108_c0_g1:373	si_a502	TRINITY_DN1108_c0_g1	361	382	373	-32.10	-21.20	0.660436137071651	6	1-8,382-375;10-15,373-368;16-18,366-364	9-9,374-374[SIL];x-x,367-367[BULt];19-21,363-361[UP3]	...(((.((((((.((((((((&)))))))).))))))-)))...	CAACCACAGGAAGCCGAAAAAC&GUUUUUCGUCUUCCU-UGGAAU	3	0.999999999999573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1108_c0_g1_373_TPlot.pdf
TRINITY_DN1108_c0_g1:557	si_s809	TRINITY_DN1108_c0_g1	545	566	557	-28.50	-19.30	0.67719298245614	7	1-13,566-554;14-16,552-550	x-x,553-553[BULt];17-21,549-545[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	CCAACGAACAAGGUAAUGAAGA&UCUUCGUUACCUU-UUCUUAAU	2	0.999912778332154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1108_c0_g1_557_TPlot.pdf
TRINITY_DN1108_c0_g1:558	si_s808	TRINITY_DN1108_c0_g1	546	567	558	-28.60	-19.30	0.674825174825175	7	2-14,566-554;15-17,552-550	1-1,567-567[UP5];x-x,553-553[BULt];18-21,549-546[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	CAACGAACAAGGUAAUGAAGAA&AUCUUCGUUACCUU-UUCUUAA	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1108_c0_g1_558_TPlot.pdf
TRINITY_DN1108_c0_g1:559	si_s807	TRINITY_DN1108_c0_g1	547	568	559	-28.90	-19.30	0.667820069204152	8	3-15,566-554;16-18,552-550	1-2,568-567[UP5];x-x,553-553[BULt];19-21,549-547[UP3]	...(((.(((((((((((((..&..)))))))))))))-)))...	AACGAACAAGGUAAUGAAGAAA&UAUCUUCGUUACCUU-UUCUUA	3	0.999999998139004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1108_c0_g1_559_TPlot.pdf
TRINITY_DN1108_c0_g1:560	si_s806	TRINITY_DN1108_c0_g1	548	569	560	-28.60	-19.30	0.674825174825175	9	4-16,566-554;17-19,552-550	1-3,569-567[UP5];x-x,553-553[BULt];20-21,549-548[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	ACGAACAAGGUAAUGAAGAAAA&UUAUCUUCGUUACCUU-UUCUU	3	0.999999998351858	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1108_c0_g1_560_TPlot.pdf
TRINITY_DN1108_c0_g1:561	si_s805	TRINITY_DN1108_c0_g1	549	570	561	-28.60	-19.30	0.674825174825175	10	5-17,566-554;18-20,552-550	1-4,570-567[UP5];x-x,553-553[BULt];21-21,549-549[UP3]	.(((.(((((((((((((....&....)))))))))))))-))).	CGAACAAGGUAAUGAAGAAAAU&UUUAUCUUCGUUACCUU-UUCU	3	0.999999991154675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1108_c0_g1_561_TPlot.pdf
TRINITY_DN1108_c0_g1:562	si_s804	TRINITY_DN1108_c0_g1	550	571	562	-27.90	-19.00	0.681003584229391	11	6-18,566-554;19-21,552-550	1-5,571-567[UP5];x-x,553-553[BULt]	(((.(((((((((((((.....&.....)))))))))))))-)))	GAACAAGGUAAUGAAGAAAAUG&UUUUAUCUUCGUUACCUU-UUC	3	0.999999869376044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN1108_c0_g1_562_TPlot.pdf
TRINITY_DN1108_c0_g1:563	si_s803	TRINITY_DN1108_c0_g1	552	572	563	-26.00	-17.60	0.676923076923077	14	7-19,566-554	1-6,572-567[UP5];20-21,553-552[UP3]	..(((((((((((((......&......)))))))))))))..	ACAAGGUAAUGAAGAAAAUGG&AUUUUAUCUUCGUUACCUUUU	3	0.999999999759135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1108_c0_g1_563_TPlot.pdf
TRINITY_DN1108_c0_g1:564	si_s802	TRINITY_DN1108_c0_g1	553	573	564	-26.40	-17.60	0.666666666666667	14.5	8-20,566-554	1-7,573-567[UP5];21-21,553-553[UP3]	.(((((((((((((.......&.......))))))))))))).	CAAGGUAAUGAAGAAAAUGGU&UAUUUUAUCUUCGUUACCUUU	3	0.999999998100946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1108_c0_g1_564_TPlot.pdf
TRINITY_DN1108_c0_g1:565	si_a325	TRINITY_DN1108_c0_g1	552	574	565	-25.90	-17.10	0.66023166023166	8	1-3,574-572;5-11,570-564;12-15,562-559;16-21,557-552	4-4,571-571[SIL];x-x,563-563[BULt];x-x,558-558[BULt]	((((((.((((.(((((((.(((&))).)))))))-))))-))))))	ACAAGGUAAUGAAGAAAAUGGUG&CAUGAUUUUUU-UAUU-CCUUGU	3	0.999999849489981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN1108_c0_g1_565_TPlot.pdf
TRINITY_DN1108_c0_g1:566	si_a324	TRINITY_DN1108_c0_g1	553	575	566	-27.50	-18.40	0.669090909090909	7.5	1-4,575-572;6-12,570-564;13-16,562-559;17-21,557-553	5-5,571-571[SIL];x-x,563-563[BULt];x-x,558-558[BULt]	(((((.((((.(((((((.((((&)))).)))))))-))))-)))))	CAAGGUAAUGAAGAAAAUGGUGG&CCAUGAUUUUUU-UAUU-CCUUG	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN1108_c0_g1_566_TPlot.pdf
TRINITY_DN1108_c0_g1:596	si_a547	TRINITY_DN1108_c0_g1	585	605	596	-26.90	-18.10	0.672862453531599	7.5	1-3,605-603;6-9,600-597;11-21,595-585	4-5,602-601[SIL];10-10,596-596[SIL]	(((((((((((.((((..(((&)))..)))).)))))))))))	AGAUGAAGAAAAAGAUGAAGC&GUUCAAUCUAUUUCUUUAUCU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN1108_c0_g1_596_TPlot.pdf
TRINITY_DN11092_c0_g1:19	si_a191	TRINITY_DN11092_c0_g1	5	28	19	-32.00	-21.20	0.6625	14.5	3-12,26-17;13-17,13-9	1-2,28-27[UP5];x-x,16-14[BULt];18-21,8-5[UP3]	....(((((...((((((((((..&..))))))))))---)))))....	AGGGGGUGAAAUACAGGGAGAGUA&AUCUUUCCCUGU---UCACUAAUA	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN11092_c0_g1_19_TPlot.pdf
TRINITY_DN11095_c0_g1:212	si_s301	TRINITY_DN11095_c0_g1	201	224	212	-30.40	-19.90	0.654605263157895	9.5	1-5,224-220;6-18,216-204;20-21,202-201	x-x,219-217[BULt];19-19,203-203[SIL]	((.(((((((((((((...(((((&)))))---))))))))))))).))	GCUGAAUUUUCGUAAUGGCUCCGA&UUGGA---AUUGCGAAAAUUCUGU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s301_TRINITY_DN11095_c0_g1_212_TPlot.pdf
TRINITY_DN11095_c0_g1:552	si_s84	TRINITY_DN11095_c0_g1	538	561	552	-32.30	-21.90	0.678018575851393	8	3-17,559-545;18-20,541-539	1-2,561-560[UP5];x-x,544-542[BULt];21-21,538-538[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	GGAACCUGAAGAAGAAAGGAAGAA&UCUUUCCUUUCUUCUUC---UUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN11095_c0_g1_552_TPlot.pdf
TRINITY_DN11095_c0_g1:553	si_s83	TRINITY_DN11095_c0_g1	542	561	553	-30.90	-22.70	0.73462783171521	5	1-5,561-557;7-18,556-545	6-6,x-x[BULq];19-21,544-542[UP3]	...((((((((((((-(((((&))))).))))))))))))...	CCUGAAGAAGAAAGG-AAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999986346763381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN11095_c0_g1_553_TPlot.pdf
TRINITY_DN11095_c0_g1:554	si_s82	TRINITY_DN11095_c0_g1	543	562	554	-28.90	-23.40	0.809688581314879	4	1-6,562-557;8-19,556-545	7-7,x-x[BULq];20-21,544-543[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	CUGAAGAAGAAAGG-AAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11095_c0_g1_554_TPlot.pdf
TRINITY_DN11095_c0_g1:555	si_s81	TRINITY_DN11095_c0_g1	544	563	555	-28.90	-23.50	0.813148788927336	4	2-7,562-557;9-20,556-545	1-1,563-563[UP5];8-8,x-x[BULq];21-21,544-544[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	UGAAGAAGAAAGG-AAGAAAC&UUUUCUUUCCUUUCUUCUUCU	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN11095_c0_g1_555_TPlot.pdf
TRINITY_DN11095_c0_g1:556	si_s80	TRINITY_DN11095_c0_g1	545	564	556	-28.20	-23.10	0.819148936170213	5	3-8,562-557;10-21,556-545	1-2,564-563[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	GAAGAAGAAAGG-AAGAAACA&UUUUUCUUUCCUUUCUUCUUC	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN11095_c0_g1_556_TPlot.pdf
TRINITY_DN11095_c0_g1:558	si_s77	TRINITY_DN11095_c0_g1	548	567	558	-25.50	-17.90	0.701960784313725	11	6-11,562-557;13-21,556-548	1-5,567-563[UP5];12-12,x-x[BULq]	(((((((((-((((((.....&.....)))))).)))))))))	GAAGAAAGG-AAGAAACAAUU&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11095_c0_g1_558_TPlot.pdf
TRINITY_DN11095_c0_g1:630	si_a787	TRINITY_DN11095_c0_g1	615	639	630	-26.30	-17.20	0.653992395437262	9.5	1-2,639-638;4-13,636-627;14-20,622-616	3-3,637-637[SIL];x-x,626-623[BULt];21-21,615-615[UP3]	.(((((((....((((((((((.((&)).))))))))))----))))))).	AGGAAGAUACUAAGAAAAAUGGUGG&CUUCUAUUUUUCU----AUUUUCCA	2	0.999999999980161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN11095_c0_g1_630_TPlot.pdf
TRINITY_DN11095_c0_g1:631	si_a786	TRINITY_DN11095_c0_g1	616	640	631	-26.60	-18.10	0.680451127819549	8.5	1-3,640-638;5-14,636-627;15-21,622-616	4-4,637-637[SIL];x-x,626-623[BULt]	(((((((....((((((((((.(((&))).))))))))))----)))))))	GGAAGAUACUAAGAAAAAUGGUGGA&UCUUCUAUUUUUCU----AUUUUCC	3	0.999999999931343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN11095_c0_g1_631_TPlot.pdf
TRINITY_DN11095_c0_g1:761	si_a66	TRINITY_DN11095_c0_g1	750	771	761	-26.70	-17.90	0.670411985018727	10.5	2-9,770-763;12-20,759-751	1-1,771-771[UP5];10-11,762-760[AILt];21-21,750-750[UP3]	.(((((((((...((((((((.&.))))))))-..))))))))).	UGAGACAGUUGAAGAAGAAGCU&CGCUUCUUU-CAAAUUGUUUUU	4	0.999999999995435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN11095_c0_g1_761_TPlot.pdf
TRINITY_DN11096_c0_g1:1692	si_a174	TRINITY_DN11096_c0_g1	1680	1701	1692	-34.40	-25.70	0.747093023255814	6	1-17,1701-1685;18-20,1683-1681	x-x,1684-1684[BULt];21-21,1680-1680[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	CGGUCAUUGUUUGGAUGGGUGA&UCACCCGUCUAGAUAAU-AUCU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN11096_c0_g1_1692_TPlot.pdf
TRINITY_DN11096_c0_g1:1843	si_a174	TRINITY_DN11096_c0_g1	1832	1852	1843	-34.40	-24.90	0.723837209302326	5.5	1-17,1852-1836;20-21,1833-1832	18-19,1835-1834[SIL]	((..(((((((((((((((((&)))))))))))))))))..))	AGUCAUUGUUUGGAUGGGUGA&UCACCCGUCUAGAUAAUAUCU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN11096_c0_g1_1843_TPlot.pdf
TRINITY_DN11096_c0_g1:1852	si_a784	TRINITY_DN11096_c0_g1	1842	1861	1852	-24.70	-16.40	0.663967611336032	10	2-11,1860-1851;14-20,1849-1843	1-1,1861-1861[UP5];12-13,1850-1850[AILq];21-21,1842-1842[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	UGGAUGGGU-GAUAGGGGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999998974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11096_c0_g1_1852_TPlot.pdf
TRINITY_DN11096_c0_g1:1853	si_a783	TRINITY_DN11096_c0_g1	1843	1862	1853	-24.70	-16.40	0.663967611336032	10	3-12,1860-1851;15-21,1849-1843	1-2,1862-1861[UP5];13-14,1850-1850[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	GGAUGGGU-GAUAGGGGAGGU&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN11096_c0_g1_1853_TPlot.pdf
TRINITY_DN11098_c0_g1:1473	si_s479	TRINITY_DN11098_c0_g1	1462	1484	1473	-26.40	-19.18	0.726515151515152	11.5	1-9,1484-1476;12-19,1471-1464	10-11,1475-1472[AILt];20-21,1463-1462[UP3]	..((((((((....(((((((((&)))))))))--..))))))))..	GAUAAAUAGGGUCUUAGGAUCCG&CGGAUCCUA--UAUUUAUUUAAA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN11098_c0_g1_1473_TPlot.pdf
TRINITY_DN11098_c0_g1:1477	si_s477	TRINITY_DN11098_c0_g1	1464	1486	1477	-27.10	-19.18	0.707749077490775	11	3-11,1484-1476;14-21,1471-1464	1-2,1486-1485[UP5];12-13,1475-1472[AILt]	((((((((....(((((((((..&..)))))))))--..))))))))	UAAAUAGGGUCUUAGGAUCCGGU&AACGGAUCCUA--UAUUUAUUUA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN11098_c0_g1_1477_TPlot.pdf
TRINITY_DN11098_c0_g1:1513	si_a374	TRINITY_DN11098_c0_g1	1499	1522	1513	-25.60	-18.10	0.70703125	9.5	1-10,1522-1513;11-19,1509-1501	x-x,1512-1510[BULt];20-21,1500-1499[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UCUUCGAGAUUUAGAUUUUUGAUC&GAUCAAAAAU---GAUUUCGAAUU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN11098_c0_g1_1513_TPlot.pdf
TRINITY_DN11098_c0_g1:1514	si_a373	TRINITY_DN11098_c0_g1	1500	1523	1514	-28.00	-19.20	0.685714285714286	9	1-11,1523-1513;12-20,1509-1501	x-x,1512-1510[BULt];21-21,1500-1500[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	CUUCGAGAUUUAGAUUUUUGAUCU&GGAUCAAAAAU---GAUUUCGAAU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN11098_c0_g1_1514_TPlot.pdf
TRINITY_DN11098_c0_g1:1515	si_a372	TRINITY_DN11098_c0_g1	1501	1525	1515	-29.40	-19.40	0.659863945578231	9	1-2,1525-1524;3-12,1522-1513;13-21,1509-1501	x-x,1523-1523[BULt];x-x,1512-1510[BULt]	(((((((((...((((((((((.((&))-))))))))))---)))))))))	UUCGAGAUUUAGAUUUUUGAUCUCG&CG-GAUCAAAAAU---GAUUUCGAA	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN11098_c0_g1_1515_TPlot.pdf
TRINITY_DN1109_c0_g1:1269	si_s569	TRINITY_DN1109_c0_g1	1258	1278	1269	-30.60	-21.00	0.686274509803922	10.5	2-9,1277-1270;11-15,1268-1264	1-1,1278-1278[UP5];10-10,1269-1269[SIL];16-21,1263-1258[UP3]	......(((((.((((((((.&.)))))))).)))))......	ACCUGGGUUCCCUGUCCCGGG&UUCGGGACAAGGAAUAAAAAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN1109_c0_g1_1269_TPlot.pdf
TRINITY_DN1109_c0_g1:1271	si_s567	TRINITY_DN1109_c0_g1	1260	1280	1271	-30.60	-23.50	0.76797385620915	8.5	1-11,1280-1270;13-17,1268-1264	12-12,1269-1269[SIL];18-21,1263-1260[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CUGGGUUCCCUGUCCCGGGAA&UUUUCGGGACAAGGAAUAAAA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN1109_c0_g1_1271_TPlot.pdf
TRINITY_DN1109_c0_g1:5131	si_a66	TRINITY_DN1109_c0_g1	5120	5141	5131	-26.70	-18.70	0.700374531835206	9	1-6,5141-5136;7-16,5134-5125	x-x,5135-5135[BULt];17-21,5124-5120[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	UCGAUCGGUUUGAGAUGAAGCG&CGCUUC-UUUCAAAUUGUUUUU	3	0.999996002057448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1109_c0_g1_5131_TPlot.pdf
TRINITY_DN1109_c0_g1:6195	si_s377	TRINITY_DN1109_c0_g1	6183	6204	6195	-44.10	-29.10	0.659863945578231	8.5	1-9,6204-6196;11-15,6194-6190;16-17,6188-6187	10-10,6195-6195[SIL];x-x,6189-6189[BULt];18-21,6186-6183[UP3]	....((.(((((.(((((((((&))))))))).)))))-))....	AGUCGGCCGGAUUCGCGAGCGG&UCGCUCGCGUGUCCG-CCUUAC	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN1109_c0_g1_6195_TPlot.pdf
TRINITY_DN1109_c0_g1:6196	si_s376	TRINITY_DN1109_c0_g1	6184	6205	6196	-42.50	-29.10	0.684705882352941	9	2-10,6204-6196;12-16,6194-6190;17-18,6188-6187	1-1,6205-6205[UP5];11-11,6195-6195[SIL];x-x,6189-6189[BULt];19-21,6186-6184[UP3]	...((.(((((.(((((((((.&.))))))))).)))))-))...	GUCGGCCGGAUUCGCGAGCGGC&AUCGCUCGCGUGUCCG-CCUUA	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN1109_c0_g1_6196_TPlot.pdf
TRINITY_DN1109_c0_g1:6198	si_s374	TRINITY_DN1109_c0_g1	6186	6210	6198	-45.60	-31.10	0.682017543859649	10.5	1-4,6210-6207;5-12,6203-6196;14-18,6194-6190;19-20,6188-6187	x-x,6206-6204[BULt];13-13,6195-6195[SIL];x-x,6189-6189[BULt];21-21,6186-6186[UP3]	.((.(((((.((((((((...((((&))))---)))))))).)))))-)).	CGGCCGGAUUCGCGAGCGGCUGUCG&CGAU---CGCUCGCGUGUCCG-CCU	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN1109_c0_g1_6198_TPlot.pdf
TRINITY_DN1109_c0_g1:6231	si_a312	TRINITY_DN1109_c0_g1	6215	6240	6231	-31.20	-21.20	0.67948717948718	9.5	1-13,6240-6228;14-20,6222-6216	x-x,6227-6223[BULt];21-21,6215-6215[UP3]	.(((((((.....(((((((((((((&)))))))))))))-----))))))).	UGGUCGUGUCCGCGAUAAAUUCGAGC&GCUUGGAUUUAUC-----CAUGAUUU	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN1109_c0_g1_6231_TPlot.pdf
TRINITY_DN1109_c0_g1:6232	si_a311	TRINITY_DN1109_c0_g1	6216	6241	6232	-32.70	-23.30	0.712538226299694	8.5	1-14,6241-6228;15-21,6222-6216	x-x,6227-6223[BULt]	(((((((.....((((((((((((((&))))))))))))))-----)))))))	GGUCGUGUCCGCGAUAAAUUCGAGCG&CGCUUGGAUUUAUC-----CAUGAUU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN1109_c0_g1_6232_TPlot.pdf
TRINITY_DN1109_c0_g1:6233	si_a310	TRINITY_DN1109_c0_g1	6217	6242	6233	-33.70	-24.40	0.724035608308605	8	1-15,6242-6228;16-21,6222-6217	x-x,6227-6223[BULt]	((((((.....(((((((((((((((&)))))))))))))))-----))))))	GUCGUGUCCGCGAUAAAUUCGAGCGA&UCGCUUGGAUUUAUC-----CAUGAU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN1109_c0_g1_6233_TPlot.pdf
TRINITY_DN1109_c0_g1:7129	si_s421	TRINITY_DN1109_c0_g1	7117	7138	7129	-23.00	-15.10	0.656521739130435	7.5	1-3,7138-7136;6-14,7133-7125;15-19,7123-7119	4-5,7135-7134[SIL];x-x,7124-7124[BULt];20-21,7118-7117[UP3]	..(((((.(((((((((..(((&)))..)))))))))-)))))..	AAUGUUGAUUAUAUAGAUGAUG&CAUAUUCUAUAUAA-CAAUAAU	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN1109_c0_g1_7129_TPlot.pdf
TRINITY_DN1109_c0_g1:933	si_a823	TRINITY_DN1109_c0_g1	922	942	933	-25.50	-17.20	0.674509803921569	9	1-13,942-930	14-21,929-922[UP3]	........(((((((((((((&)))))))))))))........	GCGAUUUGCUUUCUUUUCUUC&GAAGAAAGGAAAGAAAAAAAA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN1109_c0_g1_933_TPlot.pdf
TRINITY_DN1109_c0_g1:934	si_a822	TRINITY_DN1109_c0_g1	923	943	934	-26.20	-17.30	0.66030534351145	9	2-14,942-930	1-1,943-943[UP5];15-21,929-923[UP3]	.......(((((((((((((.&.))))))))))))).......	CGAUUUGCUUUCUUUUCUUCA&AGAAGAAAGGAAAGAAAAAAA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a822_TRINITY_DN1109_c0_g1_934_TPlot.pdf
TRINITY_DN110_c0_g1:10103	si_a73	TRINITY_DN110_c0_g1	10092	10112	10103	-21.90	-16.50	0.753424657534247	5	1-5,10112-10108;7-12,10106-10101;14-21,10099-10092	6-6,10107-10107[SIL];13-13,10100-10100[SIL]	((((((((.((((((.(((((&))))).)))))).))))))))	AGUGAUGAUGAACAAAUUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN110_c0_g1_10103_TPlot.pdf
TRINITY_DN110_c0_g1:10105	si_a71	TRINITY_DN110_c0_g1	10094	10114	10105	-23.30	-15.20	0.652360515021459	6	2-7,10113-10108;9-14,10106-10101;16-21,10099-10094	1-1,10114-10114[UP5];8-8,10107-10107[SIL];15-15,10100-10100[SIL]	((((((.((((((.((((((.&.)))))).)))))).))))))	UGAUGAUGAACAAAUUGAAGA&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN110_c0_g1_10105_TPlot.pdf
TRINITY_DN110_c0_g1:13476	si_s81	TRINITY_DN110_c0_g1	13461	13485	13476	-28.90	-21.20	0.73356401384083	5	1-11,13485-13475;12-18,13473-13467;19-21,13463-13461	x-x,13474-13474[BULt];x-x,13466-13464[BULt]	(((...(((((((.(((((((((((&)))))))))))-)))))))---)))	AGACUCAGAAGAACAGGAAAGAAAA&UUUUCUUUCCU-UUCUUCU---UCU	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN110_c0_g1_13476_TPlot.pdf
TRINITY_DN110_c0_g1:15365	si_s79	TRINITY_DN110_c0_g1	15353	15375	15365	-26.20	-18.30	0.698473282442748	6	1-9,15375-15367;10-15,15365-15360;16-20,15358-15354	x-x,15366-15366[BULt];x-x,15359-15359[BULt];21-21,15353-15353[UP3]	.(((((.((((((.(((((((((&)))))))))-))))))-))))).	UAGAAGAAAAGGGCAAGAAAAGA&UUUUUUCUU-UCCUUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN110_c0_g1_15365_TPlot.pdf
TRINITY_DN110_c0_g1:15367	si_s78	TRINITY_DN110_c0_g1	15354	15376	15367	-26.20	-18.40	0.702290076335878	6	2-10,15375-15367;11-16,15365-15360;17-21,15358-15354	1-1,15376-15376[UP5];x-x,15366-15366[BULt];x-x,15359-15359[BULt]	(((((.((((((.(((((((((.&.)))))))))-))))))-)))))	AGAAGAAAAGGGCAAGAAAAGAC&UUUUUUUCUU-UCCUUU-CUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN110_c0_g1_15367_TPlot.pdf
TRINITY_DN110_c0_g1:15368	si_s77	TRINITY_DN110_c0_g1	15355	15377	15368	-25.50	-17.30	0.67843137254902	8	3-11,15375-15367;12-17,15365-15360;18-21,15358-15355	1-2,15377-15376[UP5];x-x,15366-15366[BULt];x-x,15359-15359[BULt]	((((.((((((.(((((((((..&..)))))))))-))))))-))))	GAAGAAAAGGGCAAGAAAAGACG&UUUUUUUUCUU-UCCUUU-CUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN110_c0_g1_15368_TPlot.pdf
TRINITY_DN110_c0_g1:15372	si_s73	TRINITY_DN110_c0_g1	15360	15384	15372	-24.00	-15.90	0.6625	10.5	1-8,15384-15377;9-15,15373-15367;16-21,15365-15360	x-x,15376-15374[BULt];x-x,15366-15366[BULt]	((((((.(((((((...((((((((&))))))))---)))))))-))))))	AAAGGGCAAGAAAAGACGAGGUAGA&UCUAUUUU---UUUUCUU-UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN110_c0_g1_15372_TPlot.pdf
TRINITY_DN110_c0_g1:16679	si_a762	TRINITY_DN110_c0_g1	16668	16688	16679	-29.70	-20.50	0.69023569023569	6.5	1-7,16688-16682;9-18,16680-16671;20-21,16669-16668	8-8,16681-16681[SIL];19-19,16670-16670[SIL]	((.((((((((((.(((((((&))))))).)))))))))).))	GACUCGAUCAAGAUCUCGAAG&CUUUGGGUUUUUGAUUGAUUC	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN110_c0_g1_16679_TPlot.pdf
TRINITY_DN110_c0_g1:16680	si_a761	TRINITY_DN110_c0_g1	16669	16689	16680	-30.10	-19.70	0.654485049833887	8.5	2-8,16688-16682;10-19,16680-16671	1-1,16689-16689[UP5];9-9,16681-16681[SIL];20-21,16670-16669[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	ACUCGAUCAAGAUCUCGAAGA&CCUUUGGGUUUUUGAUUGAUU	2	0.999999616366691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN110_c0_g1_16680_TPlot.pdf
TRINITY_DN110_c0_g1:17175	si_a546	TRINITY_DN110_c0_g1	17164	17186	17175	-28.60	-19.88	0.695104895104895	10	1-5,17186-17182;8-11,17177-17174;13-21,17172-17164	6-7,17181-17178[AILt];12-12,17173-17173[SIL]	(((((((((.((((....(((((&)))))--..)))).)))))))))	GAUAAAGAAUUAGAGGUAGAACC&GGUUC--AAUCUAUUUCUUUAUC	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN110_c0_g1_17175_TPlot.pdf
TRINITY_DN110_c0_g1:19907	si_s811	TRINITY_DN110_c0_g1	19893	19916	19907	-26.40	-17.40	0.659090909090909	13	1-11,19916-19906;12-16,19902-19898	x-x,19905-19903[BULt];17-21,19897-19893[UP3]	.....(((((...(((((((((((&)))))))))))---))))).....	GCCAGAAGAAAUUGAGGUAACGGA&UUCGUUACCUU---UUCUUAAUAA	3	0.999999967025317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN110_c0_g1_19907_TPlot.pdf
TRINITY_DN110_c0_g1:20419	si_a356	TRINITY_DN110_c0_g1	20408	20428	20419	-26.90	-17.90	0.66542750929368	12	5-19,20424-20410	1-4,20428-20425[UP5];20-21,20409-20408[UP3]	..(((((((((((((((....&....)))))))))))))))..	UACCGAUUGAAGUAGGAAAAA&UUAAUUCUAUUUUGAUCGGAU	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN110_c0_g1_20419_TPlot.pdf
TRINITY_DN110_c0_g1:20420	si_a355	TRINITY_DN110_c0_g1	20409	20429	20420	-26.80	-17.90	0.667910447761194	13	6-20,20424-20410	1-5,20429-20425[UP5];21-21,20409-20409[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACCGAUUGAAGUAGGAAAAAU&AUUAAUUCUAUUUUGAUCGGA	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN110_c0_g1_20420_TPlot.pdf
TRINITY_DN110_c0_g1:20421	si_a354	TRINITY_DN110_c0_g1	20410	20430	20421	-26.20	-17.90	0.683206106870229	14	7-21,20424-20410	1-6,20430-20425[UP5]	(((((((((((((((......&......)))))))))))))))	CCGAUUGAAGUAGGAAAAAUG&UAUUAAUUCUAUUUUGAUCGG	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN110_c0_g1_20421_TPlot.pdf
TRINITY_DN110_c0_g1:22147	si_s76	TRINITY_DN110_c0_g1	22136	22156	22147	-23.60	-15.60	0.661016949152542	5.5	2-14,22155-22143;17-21,22140-22136	1-1,22156-22156[UP5];15-16,22142-22141[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AAGAAUUGGAAGAGGAAAAAC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN110_c0_g1_22147_TPlot.pdf
TRINITY_DN110_c0_g1:22280	si_s477	TRINITY_DN110_c0_g1	22269	22290	22280	-27.10	-17.90	0.660516605166052	9	1-9,22290-22282;11-16,22279-22274	10-10,22281-22280[AILt];17-21,22273-22269[UP3]	.....((((((..(((((((((&)))))))))-.)))))).....	UGUUGAAAUAUUUGGAUCCGUU&AACGGAUCC-UAUAUUUAUUUA	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN110_c0_g1_22280_TPlot.pdf
TRINITY_DN110_c0_g1:22502	si_a80	TRINITY_DN110_c0_g1	22491	22511	22502	-22.10	-14.80	0.669683257918552	9.5	2-16,22510-22496	1-1,22511-22511[UP5];17-21,22495-22491[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACCAUUUAGUGAUGAGGAACC&UGUUUUUCAUUAUUAAGAAAA	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN110_c0_g1_22502_TPlot.pdf
TRINITY_DN110_c0_g1:22503	si_a79	TRINITY_DN110_c0_g1	22492	22512	22503	-22.20	-14.80	0.666666666666667	10.5	3-17,22510-22496	1-2,22512-22511[UP5];18-21,22495-22492[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCAUUUAGUGAUGAGGAACCA&UUGUUUUUCAUUAUUAAGAAA	3	0.999999811949203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN110_c0_g1_22503_TPlot.pdf
TRINITY_DN110_c0_g1:22504	si_a78	TRINITY_DN110_c0_g1	22493	22513	22504	-22.30	-14.80	0.663677130044843	11	4-18,22510-22496	1-3,22513-22511[UP5];19-21,22495-22493[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAUUUAGUGAUGAGGAACCAA&AUUGUUUUUCAUUAUUAAGAA	3	0.99999996635098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN110_c0_g1_22504_TPlot.pdf
TRINITY_DN110_c0_g1:22505	si_a77	TRINITY_DN110_c0_g1	22494	22514	22505	-22.20	-14.80	0.666666666666667	12	5-19,22510-22496	1-4,22514-22511[UP5];20-21,22495-22494[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUUUAGUGAUGAGGAACCAAC&AAUUGUUUUUCAUUAUUAAGA	3	0.999999861197202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN110_c0_g1_22505_TPlot.pdf
TRINITY_DN110_c0_g1:22506	si_a76	TRINITY_DN110_c0_g1	22495	22515	22506	-21.20	-14.80	0.69811320754717	13	6-20,22510-22496	1-5,22515-22511[UP5];21-21,22495-22495[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUUAGUGAUGAGGAACCAACU&AAAUUGUUUUUCAUUAUUAAG	4	0.999988743695479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN110_c0_g1_22506_TPlot.pdf
TRINITY_DN110_c0_g1:24617	si_s39	TRINITY_DN110_c0_g1	24606	24626	24617	-22.30	-15.10	0.677130044843049	6.5	3-16,24624-24611;19-21,24608-24606	1-2,24626-24625[UP5];17-18,24610-24609[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	AGAAACAAUUAUUGAAGAUCC&AAAUCUUUAAUAAUUGGAUUU	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN110_c0_g1_24617_TPlot.pdf
TRINITY_DN110_c0_g1:3230	si_s234	TRINITY_DN110_c0_g1	3219	3239	3230	-31.60	-21.10	0.667721518987342	13	7-13,3233-3227;15-21,3225-3219	1-6,3239-3234[UP5];14-14,3226-3226[SIL]	(((((((.(((((((......&......))))))).)))))))	GUGCCUGGUGAUUCCACGCAC&GAAUAAGGAAUCAAUAGGCAU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s234_TRINITY_DN110_c0_g1_3230_TPlot.pdf
TRINITY_DN110_c0_g1:3443	si_a488	TRINITY_DN110_c0_g1	3433	3452	3443	-26.40	-17.70	0.670454545454545	11	5-10,3448-3443;12-21,3442-3433	1-4,3452-3449[UP5];11-11,x-x[BULq]	((((((((((-((((((....&....)))))).))))))))))	GAGAAACGGC-UGUUCUUUCC&AUAUAGAAUAUGUCGUUUUUC	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN110_c0_g1_3443_TPlot.pdf
TRINITY_DN110_c0_g1:3808	si_s87	TRINITY_DN110_c0_g1	3797	3818	3808	-32.90	-22.10	0.671732522796353	7.5	1-3,3818-3816;4-17,3814-3801	x-x,3815-3815[BULt];18-21,3800-3797[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	CCAAGAGGAAGAGGAAAGAGAA&UUC-CUUUCUUCUUCUUCGCUU	2	0.999999999998999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN110_c0_g1_3808_TPlot.pdf
TRINITY_DN110_c0_g1:3809	si_s82	TRINITY_DN110_c0_g1	3799	3817	3809	-28.90	-22.80	0.788927335640139	5.5	1-9,3817-3809;12-21,3808-3799	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	AAGAGGAAGA--GGAAAGAGA&UUUCUUUCCUUUCUUCUUCUU	2	0.996067721423274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN110_c0_g1_3809_TPlot.pdf
TRINITY_DN110_c0_g1:3810	si_s80	TRINITY_DN110_c0_g1	3798	3819	3810	-28.20	-21.70	0.769503546099291	5	2-14,3818-3806;15-20,3804-3799	1-1,3819-3819[UP5];x-x,3805-3805[BULt];21-21,3798-3798[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	CAAGAGGAAGAGGAAAGAGAAC&UUUUUCUUUCCUUU-CUUCUUC	2	0.999822692898121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN110_c0_g1_3810_TPlot.pdf
TRINITY_DN110_c0_g1:3811	si_s79	TRINITY_DN110_c0_g1	3799	3820	3811	-26.20	-21.70	0.82824427480916	6	3-15,3818-3806;16-21,3804-3799	1-2,3820-3819[UP5];x-x,3805-3805[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AAGAGGAAGAGGAAAGAGAACC&UUUUUUCUUUCCUUU-CUUCUU	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN110_c0_g1_3811_TPlot.pdf
TRINITY_DN110_c0_g1:3813	si_s77	TRINITY_DN110_c0_g1	3801	3822	3813	-25.50	-19.60	0.768627450980392	10	5-17,3818-3806;18-21,3804-3801	1-4,3822-3819[UP5];x-x,3805-3805[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GAGGAAGAGGAAAGAGAACCUA&UUUUUUUUCUUUCCUUU-CUUC	2	0.99999449637072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN110_c0_g1_3813_TPlot.pdf
TRINITY_DN110_c0_g1:3814	si_s76	TRINITY_DN110_c0_g1	3802	3823	3814	-23.60	-16.40	0.694915254237288	12	6-18,3818-3806;19-21,3804-3802	1-5,3823-3819[UP5];x-x,3805-3805[BULt]	(((.(((((((((((((.....&.....)))))))))))))-)))	AGGAAGAGGAAAGAGAACCUAA&AUUUUUUUUCUUUCCUUU-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN110_c0_g1_3814_TPlot.pdf
TRINITY_DN110_c0_g1:3887	si_s695	TRINITY_DN110_c0_g1	3876	3896	3887	-24.70	-16.60	0.672064777327935	12	5-18,3892-3879	1-4,3896-3893[UP5];19-21,3878-3876[UP3]	...((((((((((((((....&....))))))))))))))...	AUAAAUGAGUCGACUGACUUC&UUAAUUAGUCGAUUUAUUAGU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN110_c0_g1_3887_TPlot.pdf
TRINITY_DN110_c0_g1:3888	si_s694	TRINITY_DN110_c0_g1	3877	3897	3888	-23.90	-16.60	0.694560669456067	13	6-19,3892-3879	1-5,3897-3893[UP5];20-21,3878-3877[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAAAUGAGUCGACUGACUUCC&UUUAAUUAGUCGAUUUAUUAG	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN110_c0_g1_3888_TPlot.pdf
TRINITY_DN110_c0_g1:3889	si_s693	TRINITY_DN110_c0_g1	3878	3898	3889	-23.90	-16.60	0.694560669456067	14	7-20,3892-3879	1-6,3898-3893[UP5];21-21,3878-3878[UP3]	.((((((((((((((......&......)))))))))))))).	AAAUGAGUCGACUGACUUCCU&GUUUAAUUAGUCGAUUUAUUA	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN110_c0_g1_3889_TPlot.pdf
TRINITY_DN110_c0_g1:3890	si_s692	TRINITY_DN110_c0_g1	3879	3899	3890	-24.20	-16.30	0.673553719008265	15	8-21,3892-3879	1-7,3899-3893[UP5]	((((((((((((((.......&.......))))))))))))))	AAUGAGUCGACUGACUUCCUA&AGUUUAAUUAGUCGAUUUAUU	2	0.97609923111979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN110_c0_g1_3890_TPlot.pdf
TRINITY_DN110_c0_g1:4774	si_a785	TRINITY_DN110_c0_g1	4763	4784	4774	-25.90	-18.00	0.694980694980695	8	1-9,4784-4776;11-18,4773-4766	10-10,4775-4774[AILt];19-21,4765-4763[UP3]	...((((((((..(((((((((&)))))))))-.))))))))...	UGUAAUAGAAACUAUAGAGGAG&CUCUUCUAU-UUUUCUAUUUUC	3	0.999999999851826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN110_c0_g1_4774_TPlot.pdf
TRINITY_DN110_c0_g1:4776	si_a784	TRINITY_DN110_c0_g1	4764	4785	4776	-24.70	-18.20	0.736842105263158	8	2-10,4784-4776;12-19,4773-4766	1-1,4785-4785[UP5];11-11,4775-4774[AILt];20-21,4765-4764[UP3]	..((((((((..(((((((((.&.)))))))))-.))))))))..	GUAAUAGAAACUAUAGAGGAGG&ACUCUUCUAU-UUUUCUAUUUU	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN110_c0_g1_4776_TPlot.pdf
TRINITY_DN110_c0_g1:4840	si_s71	TRINITY_DN110_c0_g1	4829	4852	4840	-25.70	-17.60	0.684824902723736	11	1-7,4852-4846;8-19,4842-4831	x-x,4845-4843[BULt];20-21,4830-4829[UP3]	..((((((((((((...(((((((&)))))))---))))))))))))..	ACGAAAGAAAAAGAACAGUAGAGG&CUUCUAU---UUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN110_c0_g1_4840_TPlot.pdf
TRINITY_DN110_c0_g1:4842	si_s69	TRINITY_DN110_c0_g1	4831	4854	4842	-23.40	-19.60	0.837606837606838	10	2-9,4853-4846;10-21,4842-4831	1-1,4854-4854[UP5];x-x,4845-4843[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	GAAAGAAAAAGAACAGUAGAGGUA&AACUUCUAU---UUUUUUUCUUUC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN110_c0_g1_4842_TPlot.pdf
TRINITY_DN110_c0_g1:5017	si_s538	TRINITY_DN110_c0_g1	5006	5026	5017	-28.00	-19.30	0.689285714285714	10	3-15,5024-5012	1-2,5026-5025[UP5];16-21,5011-5006[UP3]	......(((((((((((((..&..)))))))))))))......	UGCAAAUGAUCGGGUCAAACC&UUUUUGAUCCGAUCAAAAUAG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN110_c0_g1_5017_TPlot.pdf
TRINITY_DN110_c0_g1:5019	si_s536	TRINITY_DN110_c0_g1	5008	5028	5019	-27.70	-19.30	0.696750902527076	12	5-17,5024-5012	1-4,5028-5025[UP5];18-21,5011-5008[UP3]	....(((((((((((((....&....)))))))))))))....	CAAAUGAUCGGGUCAAACCAA&CAUUUUUGAUCCGAUCAAAAU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN110_c0_g1_5019_TPlot.pdf
TRINITY_DN110_c0_g1:5020	si_s535	TRINITY_DN110_c0_g1	5009	5029	5020	-28.60	-19.30	0.674825174825175	13	6-18,5024-5012	1-5,5029-5025[UP5];19-21,5011-5009[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAUGAUCGGGUCAAACCAAC&UCAUUUUUGAUCCGAUCAAAA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN110_c0_g1_5020_TPlot.pdf
TRINITY_DN110_c0_g1:5023	si_s532	TRINITY_DN110_c0_g1	5012	5032	5023	-28.70	-19.10	0.665505226480836	15.5	9-21,5024-5012	1-8,5032-5025[UP5]	(((((((((((((........&........)))))))))))))	UGAUCGGGUCAAACCAACAAG&AAAUCAUUUUUGAUCCGAUCA	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN110_c0_g1_5023_TPlot.pdf
TRINITY_DN110_c0_g1:5041	si_s71	TRINITY_DN110_c0_g1	5030	5050	5041	-25.70	-17.00	0.66147859922179	8	4-19,5047-5032	1-3,5050-5048[UP5];20-21,5031-5030[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAAAGAAGAAAAAUAGCAA&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN110_c0_g1_5041_TPlot.pdf
TRINITY_DN110_c0_g1:59	si_a784	TRINITY_DN110_c0_g1	48	68	59	-24.70	-16.20	0.65587044534413	9	1-5,68-64;7-15,62-54	6-6,63-63[SIL];16-21,53-48[UP3]	......(((((((((.(((((&))))).)))))))))......	AGUUGCGAAAAAUAGUGGAGU&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN110_c0_g1_59_TPlot.pdf
TRINITY_DN110_c0_g1:6221	si_a70	TRINITY_DN110_c0_g1	6210	6230	6221	-23.90	-18.10	0.757322175732218	6.5	3-18,6228-6213	1-2,6230-6229[UP5];19-21,6212-6210[UP3]	...((((((((((((((((..&..))))))))))))))))...	GACGAAGAACAAUUUGAAACG&UCUUUCAAAUUGUUUUUCAUU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN110_c0_g1_6221_TPlot.pdf
TRINITY_DN110_c0_g1:6725	si_a416	TRINITY_DN110_c0_g1	6714	6733	6725	-20.50	-13.62	0.664390243902439	9	1-4,6733-6730;9-21,6726-6714	5-8,6729-6727[AILq]	(((((((((((((...-((((&))))....)))))))))))))	CCUAUAUUUAUUUCCG-AUGA&UUAUAUUUAAAUAAAUAUAGG	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN110_c0_g1_6725_TPlot.pdf
TRINITY_DN110_c0_g1:6747	si_a786	TRINITY_DN110_c0_g1	6734	6760	6747	-26.60	-17.60	0.661654135338346	12	1-7,6760-6754;8-17,6749-6740;18-21,6737-6734	x-x,6753-6750[BULt];x-x,6739-6738[BULt]	((((..((((((((((....(((((((&)))))))----))))))))))--))))	GGAAUUGGUAGAAAAGAAUUUAGAAGA&UCUUCUA----UUUUUCUAUU--UUCC	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN110_c0_g1_6747_TPlot.pdf
TRINITY_DN110_c0_g1:6748	si_a785	TRINITY_DN110_c0_g1	6735	6761	6748	-25.90	-17.50	0.675675675675676	12	1-8,6761-6754;9-18,6749-6740;19-21,6737-6735	x-x,6753-6750[BULt];x-x,6739-6738[BULt]	(((..((((((((((....((((((((&))))))))----))))))))))--)))	GAAUUGGUAGAAAAGAAUUUAGAAGAG&CUCUUCUA----UUUUUCUAUU--UUC	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN110_c0_g1_6748_TPlot.pdf
TRINITY_DN110_c0_g1:6749	si_a784	TRINITY_DN110_c0_g1	6738	6762	6749	-24.70	-17.20	0.696356275303644	13	2-9,6761-6754;10-19,6749-6740	1-1,6762-6762[UP5];x-x,6753-6750[BULt];20-21,6739-6738[UP3]	..((((((((((....((((((((.&.))))))))----))))))))))..	UUGGUAGAAAAGAAUUUAGAAGAGG&ACUCUUCUA----UUUUUCUAUUUU	4	0.999999999621619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN110_c0_g1_6749_TPlot.pdf
TRINITY_DN110_c0_g1:6754	si_a783	TRINITY_DN110_c0_g1	6739	6763	6754	-24.70	-17.20	0.696356275303644	14	3-10,6761-6754;11-20,6749-6740	1-2,6763-6762[UP5];x-x,6753-6750[BULt];21-21,6739-6739[UP3]	.((((((((((....((((((((..&..))))))))----)))))))))).	UGGUAGAAAAGAAUUUAGAAGAGGA&AACUCUUCUA----UUUUUCUAUUU	2	0.999991803686285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN110_c0_g1_6754_TPlot.pdf
TRINITY_DN110_c0_g1:6755	si_a782	TRINITY_DN110_c0_g1	6740	6764	6755	-26.40	-17.20	0.651515151515151	15	4-11,6761-6754;12-21,6749-6740	1-3,6764-6762[UP5];x-x,6753-6750[BULt]	((((((((((....((((((((...&...))))))))----))))))))))	GGUAGAAAAGAAUUUAGAAGAGGAU&CAACUCUUCUA----UUUUUCUAUU	2	0.999999543342683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN110_c0_g1_6755_TPlot.pdf
TRINITY_DN110_c0_g1:7084	si_s69	TRINITY_DN110_c0_g1	7073	7094	7084	-23.40	-17.20	0.735042735042735	6.5	1-7,7094-7088;9-20,7085-7074	8-8,7087-7086[AILt];21-21,7073-7073[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	AGAAGAAAAAAGAGAAGAAGUU&AACUUCU-AUUUUUUUUCUUUC	4	0.999999999812447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN110_c0_g1_7084_TPlot.pdf
TRINITY_DN110_c0_g1:7404	si_a762	TRINITY_DN110_c0_g1	7392	7413	7404	-29.70	-20.10	0.676767676767677	6	1-12,7413-7402;13-20,7400-7393	x-x,7401-7401[BULt];21-21,7392-7392[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	AAAUUAGUCGAAGAAUCCAAAG&CUUUGGGUUUUU-GAUUGAUUC	2	0.999508005532118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN110_c0_g1_7404_TPlot.pdf
TRINITY_DN110_c0_g1:7405	si_a761	TRINITY_DN110_c0_g1	7393	7414	7405	-30.10	-20.50	0.681063122923588	5	2-13,7413-7402;14-21,7400-7393	1-1,7414-7414[UP5];x-x,7401-7401[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AAUUAGUCGAAGAAUCCAAAGA&CCUUUGGGUUUUU-GAUUGAUU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN110_c0_g1_7405_TPlot.pdf
TRINITY_DN110_c0_g1:9068	si_s480	TRINITY_DN110_c0_g1	9057	9077	9068	-25.00	-18.60	0.744	11	1-13,9077-9065	14-21,9064-9057[UP3]	........(((((((((((((&)))))))))))))........	CACAUACCAGAUGUGGGAUCC&GGAUCCUAUAUUUAUUUAAAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN110_c0_g1_9068_TPlot.pdf
TRINITY_DN110_c0_g1:9069	si_s479	TRINITY_DN110_c0_g1	9058	9078	9069	-26.40	-20.70	0.784090909090909	9.5	1-14,9078-9065	15-21,9064-9058[UP3]	.......((((((((((((((&)))))))))))))).......	ACAUACCAGAUGUGGGAUCCG&CGGAUCCUAUAUUUAUUUAAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN110_c0_g1_9069_TPlot.pdf
TRINITY_DN110_c0_g1:9071	si_s477	TRINITY_DN110_c0_g1	9060	9080	9071	-27.10	-20.70	0.763837638376384	10.5	3-16,9078-9065	1-2,9080-9079[UP5];17-21,9064-9060[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUACCAGAUGUGGGAUCCGAA&AACGGAUCCUAUAUUUAUUUA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN110_c0_g1_9071_TPlot.pdf
TRINITY_DN110_c0_g1:9072	si_s476	TRINITY_DN110_c0_g1	9061	9081	9072	-28.40	-20.70	0.72887323943662	11	4-17,9078-9065	1-3,9081-9079[UP5];18-21,9064-9061[UP3]	....((((((((((((((...&...))))))))))))))....	UACCAGAUGUGGGAUCCGAAC&CAACGGAUCCUAUAUUUAUUU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN110_c0_g1_9072_TPlot.pdf
TRINITY_DN110_c0_g1:9073	si_s475	TRINITY_DN110_c0_g1	9062	9082	9073	-30.80	-20.70	0.672077922077922	12	5-18,9078-9065	1-4,9082-9079[UP5];19-21,9064-9062[UP3]	...((((((((((((((....&....))))))))))))))...	ACCAGAUGUGGGAUCCGAACC&CCAACGGAUCCUAUAUUUAUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s475_TRINITY_DN110_c0_g1_9073_TPlot.pdf
TRINITY_DN110_c0_g1:9074	si_s474	TRINITY_DN110_c0_g1	9063	9083	9074	-31.80	-20.70	0.650943396226415	12.5	6-19,9078-9065	1-5,9083-9079[UP5];20-21,9064-9063[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCAGAUGUGGGAUCCGAACCU&UCCAACGGAUCCUAUAUUUAU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN110_c0_g1_9074_TPlot.pdf
TRINITY_DN110_c0_g1:9075	si_s473	TRINITY_DN110_c0_g1	9064	9084	9075	-31.80	-20.70	0.650943396226415	13.5	7-20,9078-9065	1-6,9084-9079[UP5];21-21,9064-9064[UP3]	.((((((((((((((......&......)))))))))))))).	CAGAUGUGGGAUCCGAACCUG&AUCCAACGGAUCCUAUAUUUA	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN110_c0_g1_9075_TPlot.pdf
TRINITY_DN110_c0_g1:9189	si_s74	TRINITY_DN110_c0_g1	9177	9198	9189	-25.00	-17.80	0.712	5.5	1-7,9198-9192;9-17,9190-9182;19-21,9179-9177	8-8,9191-9191[SIL];18-18,9181-9180[AILt]	(((..(((((((((.(((((((&))))))).)))))))))-.)))	GAACUGGAAGGAAAUAAGAUAG&CUAUUUUUUUUCUUUCC-UUUC	3	0.999999999998727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN110_c0_g1_9189_TPlot.pdf
TRINITY_DN110_c0_g1:9190	si_s73	TRINITY_DN110_c0_g1	9179	9199	9190	-24.00	-16.90	0.704166666666667	7.5	2-8,9198-9192;10-18,9190-9182	1-1,9199-9199[UP5];9-9,9191-9191[SIL];19-21,9181-9179[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	ACUGGAAGGAAAUAAGAUAGC&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN110_c0_g1_9190_TPlot.pdf
TRINITY_DN110_c0_g1:9191	si_s72	TRINITY_DN110_c0_g1	9180	9200	9191	-24.10	-16.90	0.701244813278008	8.5	3-9,9198-9192;11-19,9190-9182	1-2,9200-9199[UP5];10-10,9191-9191[SIL];20-21,9181-9180[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	CUGGAAGGAAAUAAGAUAGCA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN110_c0_g1_9191_TPlot.pdf
TRINITY_DN110_c0_g1:9192	si_s71	TRINITY_DN110_c0_g1	9181	9201	9192	-25.70	-18.40	0.715953307392996	6.5	1-2,9201-9200;4-10,9198-9192;12-20,9190-9182	3-3,9199-9199[SIL];11-11,9191-9191[SIL];21-21,9181-9181[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	UGGAAGGAAAUAAGAUAGCAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN110_c0_g1_9192_TPlot.pdf
TRINITY_DN110_c0_g1:9193	si_s70	TRINITY_DN110_c0_g1	9182	9202	9193	-25.80	-18.00	0.697674418604651	6.5	2-3,9201-9200;5-11,9198-9192;13-21,9190-9182	1-1,9202-9202[UP5];4-4,9199-9199[SIL];12-12,9191-9191[SIL]	(((((((((.(((((((.((.&.)).))))))).)))))))))	GGAAGGAAAUAAGAUAGCAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999998939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN110_c0_g1_9193_TPlot.pdf
TRINITY_DN110_c0_g1:9732	si_a75	TRINITY_DN110_c0_g1	9721	9741	9732	-21.30	-14.20	0.666666666666667	12.5	3-16,9739-9726	1-2,9741-9740[UP5];17-21,9725-9721[UP3]	.....((((((((((((((..&..)))))))))))))).....	CCGACGAUGAGGAGCAGUUGG&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999996961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN110_c0_g1_9732_TPlot.pdf
TRINITY_DN110_c0_g1:9733	si_a74	TRINITY_DN110_c0_g1	9722	9742	9733	-22.20	-15.10	0.68018018018018	10.5	1-2,9742-9741;4-17,9739-9726	3-3,9740-9740[SIL];18-21,9725-9722[UP3]	....((((((((((((((.((&)).))))))))))))))....	CGACGAUGAGGAGCAGUUGGA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999944098155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN110_c0_g1_9733_TPlot.pdf
TRINITY_DN110_c0_g1:9734	si_a73	TRINITY_DN110_c0_g1	9723	9743	9734	-21.90	-15.30	0.698630136986301	10	2-3,9742-9741;5-18,9739-9726	1-1,9743-9743[UP5];4-4,9740-9740[SIL];19-21,9725-9723[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	GACGAUGAGGAGCAGUUGGAG&UUCAAAUUGUUUUUCAUUAUU	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN110_c0_g1_9734_TPlot.pdf
TRINITY_DN110_c0_g1:9735	si_a72	TRINITY_DN110_c0_g1	9724	9744	9735	-21.90	-16.80	0.767123287671233	8.5	1-4,9744-9741;6-19,9739-9726	5-5,9740-9740[SIL];20-21,9725-9724[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	ACGAUGAGGAGCAGUUGGAGA&UUUCAAAUUGUUUUUCAUUAU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN110_c0_g1_9735_TPlot.pdf
TRINITY_DN110_c0_g1:9739	si_a68	TRINITY_DN110_c0_g1	9728	9753	9739	-25.40	-16.70	0.65748031496063	14.5	1-6,9753-9748;7-8,9742-9741;10-21,9739-9728	x-x,9747-9743[BULt];9-9,9740-9740[SIL]	((((((((((((.((.....((((((&))))))-----)).))))))))))))	UGAGGAGCAGUUGGAGAUAAAAGAAG&CUUCUU-----UCAAAUUGUUUUUCA	4	0.999999999999932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN110_c0_g1_9739_TPlot.pdf
TRINITY_DN110_c0_g1:9918	si_a75	TRINITY_DN110_c0_g1	9907	9927	9918	-21.30	-14.20	0.666666666666667	12.5	3-16,9925-9912	1-2,9927-9926[UP5];17-21,9911-9907[UP3]	.....((((((((((((((..&..)))))))))))))).....	CCGACGAUGAGGAGCAGUUGG&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999998159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN110_c0_g1_9918_TPlot.pdf
TRINITY_DN110_c0_g1:9919	si_a74	TRINITY_DN110_c0_g1	9908	9928	9919	-22.20	-15.10	0.68018018018018	10.5	1-2,9928-9927;4-17,9925-9912	3-3,9926-9926[SIL];18-21,9911-9908[UP3]	....((((((((((((((.((&)).))))))))))))))....	CGACGAUGAGGAGCAGUUGGA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999880015248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN110_c0_g1_9919_TPlot.pdf
TRINITY_DN110_c0_g1:9920	si_a73	TRINITY_DN110_c0_g1	9909	9929	9920	-21.90	-15.30	0.698630136986301	10	2-3,9928-9927;5-18,9925-9912	1-1,9929-9929[UP5];4-4,9926-9926[SIL];19-21,9911-9909[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	GACGAUGAGGAGCAGUUGGAG&UUCAAAUUGUUUUUCAUUAUU	3	0.999998905636671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN110_c0_g1_9920_TPlot.pdf
TRINITY_DN110_c0_g1:9921	si_a72	TRINITY_DN110_c0_g1	9910	9930	9921	-21.90	-16.80	0.767123287671233	8.5	1-4,9930-9927;6-19,9925-9912	5-5,9926-9926[SIL];20-21,9911-9910[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	ACGAUGAGGAGCAGUUGGAGA&UUUCAAAUUGUUUUUCAUUAU	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN110_c0_g1_9921_TPlot.pdf
TRINITY_DN110_c0_g1:9922	si_a71	TRINITY_DN110_c0_g1	9911	9931	9922	-23.30	-17.00	0.729613733905579	8.5	2-5,9930-9927;7-20,9925-9912	1-1,9931-9931[UP5];6-6,9926-9926[SIL];21-21,9911-9911[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	CGAUGAGGAGCAGUUGGAGAU&CUUUCAAAUUGUUUUUCAUUA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN110_c0_g1_9922_TPlot.pdf
TRINITY_DN110_c0_g1:9925	si_a68	TRINITY_DN110_c0_g1	9914	9939	9925	-25.40	-16.70	0.65748031496063	14.5	1-6,9939-9934;7-8,9928-9927;10-21,9925-9914	x-x,9933-9929[BULt];9-9,9926-9926[SIL]	((((((((((((.((.....((((((&))))))-----)).))))))))))))	UGAGGAGCAGUUGGAGAUAAAAGAAG&CUUCUU-----UCAAAUUGUUUUUCA	3	0.999999999999914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN110_c0_g1_9925_TPlot.pdf
TRINITY_DN11100_c0_g1:632	si_a427	TRINITY_DN11100_c0_g1	622	641	632	-31.80	-21.40	0.672955974842767	12	5-11,637-631;13-20,630-623	1-4,641-638[UP5];12-12,x-x[BULq];21-21,622-622[UP3]	.((((((((-(((((((....&....))))))).)))))))).	UUCCGGCGG-UCCUAUGAUAG&UAAAUAUAGGAUCCGUUGGAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN11100_c0_g1_632_TPlot.pdf
TRINITY_DN11100_c0_g2:424	si_a135	TRINITY_DN11100_c0_g2	415	433	424	-25.70	-17.90	0.696498054474708	7.5	2-10,432-424;13-21,423-415	1-1,433-433[UP5];11-12,x-x[BULq]	(((((((((--(((((((((.&.)))))))))..)))))))))	GACAACGAU--AUUGCUGUUA&CAAUAGUAAUUAAUCGUUGUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN11100_c0_g2_424_TPlot.pdf
TRINITY_DN11100_c0_g2:661	si_s740	TRINITY_DN11100_c0_g2	651	670	661	-35.20	-22.90	0.650568181818182	7	1-14,670-657;17-21,655-651	15-16,656-656[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UGAGGA-GAUCUGUUUAUCUG&CGGGUGAAUAGAUUGACCUUA	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN11100_c0_g2_661_TPlot.pdf
TRINITY_DN11102_c0_g1:683	si_s190	TRINITY_DN11102_c0_g1	672	693	683	-28.00	-18.40	0.657142857142857	4.5	1-3,693-691;4-17,689-676;19-21,674-672	x-x,690-690[BULt];18-18,675-675[SIL]	(((.((((((((((((((.(((&)))-)))))))))))))).)))	AUAAUCCAAAAUAAUUGUCUAC&GUA-ACGAUUAUUUUGGAAUGU	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN11102_c0_g1_683_TPlot.pdf
TRINITY_DN11104_c0_g1:245	si_a898	TRINITY_DN11104_c0_g1	234	254	245	-20.50	-13.80	0.673170731707317	11	4-17,251-238	1-3,254-252[UP5];18-21,237-234[UP3]	....((((((((((((((...&...))))))))))))))....	AACAGUGUUACUUGUUAUAUA&GUAAUAAUAAGUAAUAUAAAA	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN11104_c0_g1_245_TPlot.pdf
TRINITY_DN11104_c0_g1:247	si_a896	TRINITY_DN11104_c0_g1	236	257	247	-21.60	-15.30	0.708333333333333	7	1-5,257-253;6-19,251-238	x-x,252-252[BULt];20-21,237-236[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	CAGUGUUACUUGUUAUAUAUUA&UAGUA-AUAAUAAGUAAUAUAA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN11104_c0_g1_247_TPlot.pdf
TRINITY_DN11104_c0_g1:248	si_a895	TRINITY_DN11104_c0_g1	237	258	248	-21.70	-15.30	0.705069124423963	7	2-6,257-253;7-20,251-238	1-1,258-258[UP5];x-x,252-252[BULt];21-21,237-237[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	AGUGUUACUUGUUAUAUAUUAG&AUAGUA-AUAAUAAGUAAUAUA	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN11104_c0_g1_248_TPlot.pdf
TRINITY_DN11104_c0_g1:249	si_a894	TRINITY_DN11104_c0_g1	238	259	249	-21.70	-14.80	0.682027649769585	8	3-7,257-253;8-21,251-238	1-2,259-258[UP5];x-x,252-252[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	GUGUUACUUGUUAUAUAUUAGA&UAUAGUA-AUAAUAAGUAAUAU	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN11104_c0_g1_249_TPlot.pdf
TRINITY_DN11108_c0_g1:3587	si_s69	TRINITY_DN11108_c0_g1	3576	3598	3587	-23.40	-15.78	0.674358974358974	10	1-7,3598-3592;10-20,3587-3577	8-9,3591-3588[AILt];21-21,3576-3576[UP3]	.(((((((((((....(((((((&)))))))--..))))))))))).	AGAAGAAGAAAAUAAGAGAAGUU&AACUUCU--AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11108_c0_g1_3587_TPlot.pdf
TRINITY_DN11108_c0_g1:3588	si_s68	TRINITY_DN11108_c0_g1	3577	3599	3588	-23.10	-15.68	0.678787878787879	10	2-8,3598-3592;11-21,3587-3577	1-1,3599-3599[UP5];9-10,3591-3588[AILt]	(((((((((((....(((((((.&.)))))))--..)))))))))))	GAAGAAGAAAAUAAGAGAAGUUU&CAACUUCU--AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11108_c0_g1_3588_TPlot.pdf
TRINITY_DN11108_c0_g1:4108	si_a68	TRINITY_DN11108_c0_g1	4092	4117	4108	-25.40	-16.60	0.653543307086614	13	1-10,4117-4108;11-15,4102-4098;17-20,4096-4093	x-x,4107-4103[BULt];16-16,4097-4097[SIL];21-21,4092-4092[UP3]	.((((.(((((.....((((((((((&))))))))))-----))))).)))).	CGAAAUACAGUCACUAUUGAAAGAAG&CUUCUUUCAA-----AUUGUUUUUCA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN11108_c0_g1_4108_TPlot.pdf
TRINITY_DN11108_c0_g1:4457	si_a284	TRINITY_DN11108_c0_g1	4446	4466	4457	-28.30	-18.50	0.653710247349823	14	4-13,4463-4454	1-3,4466-4464[UP5];14-21,4453-4446[UP3]	........((((((((((...&...))))))))))........	GUUGCUAGCCGAGCGAUCAGU&AAAGAUCGCUUGGAUUUAAAA	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN11108_c0_g1_4457_TPlot.pdf
TRINITY_DN11108_c0_g1:4458	si_a283	TRINITY_DN11108_c0_g1	4447	4467	4458	-28.30	-18.50	0.653710247349823	15	5-14,4463-4454	1-4,4467-4464[UP5];15-21,4453-4447[UP3]	.......((((((((((....&....)))))))))).......	UUGCUAGCCGAGCGAUCAGUG&AAAAGAUCGCUUGGAUUUAAA	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN11108_c0_g1_4458_TPlot.pdf
TRINITY_DN11108_c0_g1:5146	si_s67	TRINITY_DN11108_c0_g1	5135	5155	5146	-25.60	-17.50	0.68359375	11	4-20,5152-5136	1-3,5155-5153[UP5];21-21,5135-5135[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAGGAAAGAGAUGGGGGUAAA&GCAACUUCUAUUUUUUUUCUU	4	0.999999993050157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN11108_c0_g1_5146_TPlot.pdf
TRINITY_DN11108_c0_g1:7408	si_s68	TRINITY_DN11108_c0_g1	7397	7419	7408	-23.10	-15.68	0.678787878787879	10	2-8,7418-7412;11-21,7407-7397	1-1,7419-7419[UP5];9-10,7411-7408[AILt]	(((((((((((....(((((((.&.)))))))--..)))))))))))	GAAGAAGAAAAUAAGAGAAGUUU&CAACUUCU--AUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11108_c0_g1_7408_TPlot.pdf
TRINITY_DN11108_c0_g1:7751	si_s696	TRINITY_DN11108_c0_g1	7740	7761	7751	-26.30	-17.90	0.680608365019011	11.5	5-7,7757-7755;9-21,7752-7740	1-4,7761-7758[UP5];8-8,7754-7753[AILt]	(((((((((((((..(((....&....)))-.)))))))))))))	CACUAAUAGAUCGUUCUACCAC&UAAUUAG-UCGAUUUAUUAGUG	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN11108_c0_g1_7751_TPlot.pdf
TRINITY_DN11108_c0_g1:7928	si_a68	TRINITY_DN11108_c0_g1	7912	7937	7928	-25.40	-16.60	0.653543307086614	13	1-10,7937-7928;11-15,7922-7918;17-20,7916-7913	x-x,7927-7923[BULt];16-16,7917-7917[SIL];21-21,7912-7912[UP3]	.((((.(((((.....((((((((((&))))))))))-----))))).)))).	CGAAAUACAGUCACUAUUGAAAGAAG&CUUCUUUCAA-----AUUGUUUUUCA	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN11108_c0_g1_7928_TPlot.pdf
TRINITY_DN11108_c0_g1:8276	si_a285	TRINITY_DN11108_c0_g1	8265	8285	8276	-28.30	-18.50	0.653710247349823	13	3-12,8283-8274	1-2,8285-8284[UP5];13-21,8273-8265[UP3]	.........((((((((((..&..)))))))))).........	AGUUGCUAGCCGAGCGAUCAG&AAGAUCGCUUGGAUUUAAAAA	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN11108_c0_g1_8276_TPlot.pdf
TRINITY_DN11108_c0_g1:8278	si_a283	TRINITY_DN11108_c0_g1	8267	8287	8278	-28.30	-18.50	0.653710247349823	15	5-14,8283-8274	1-4,8287-8284[UP5];15-21,8273-8267[UP3]	.......((((((((((....&....)))))))))).......	UUGCUAGCCGAGCGAUCAGUG&AAAAGAUCGCUUGGAUUUAAA	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN11108_c0_g1_8278_TPlot.pdf
TRINITY_DN11108_c0_g1:8489	si_a296	TRINITY_DN11108_c0_g1	8478	8500	8489	-26.80	-17.64	0.658208955223881	14.5	1-7,8500-8494;12-20,8487-8479	8-11,8493-8488[AILt];21-21,8478-8478[UP3]	.(((((((((......(((((((&)))))))--....))))))))).	AGAGCGAAUCAACAGGUUGAAUC&GAUUUAA--AAAAGAUUCGCUUG	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a296_TRINITY_DN11108_c0_g1_8489_TPlot.pdf
TRINITY_DN11108_c0_g1:851	si_a296	TRINITY_DN11108_c0_g1	840	862	851	-26.80	-17.64	0.658208955223881	14.5	1-7,862-856;12-20,849-841	8-11,855-850[AILt];21-21,840-840[UP3]	.(((((((((......(((((((&)))))))--....))))))))).	AGAGCGAAUCAACAGGUUGAAUC&GAUUUAA--AAAAGAUUCGCUUG	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a296_TRINITY_DN11108_c0_g1_851_TPlot.pdf
TRINITY_DN1110_c0_g1:2381	si_s706	TRINITY_DN1110_c0_g1	2366	2390	2381	-29.40	-20.60	0.700680272108844	7.5	1-13,2390-2378;14-20,2373-2367	x-x,2377-2374[BULt];21-21,2366-2366[UP3]	.(((((((....(((((((((((((&)))))))))))))----))))))).	GUUUCCUGGUUAUUCACUAAUGAGU&AUUUAUUAGUGAA----CAGGGAAA	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN1110_c0_g1_2381_TPlot.pdf
TRINITY_DN11120_c0_g1:1247	si_s75	TRINITY_DN11120_c0_g1	1235	1256	1247	-24.00	-15.80	0.658333333333333	5.5	1-10,1256-1247;12-18,1245-1239;19-21,1237-1235	11-11,1246-1246[SIL];x-x,1238-1238[BULt]	(((.(((((((.((((((((((&)))))))))).)))))))-)))	AGACGAGGAAAAGAAGAAAAUA&UAUUUUUUUUCUUUCCUU-UCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11120_c0_g1_1247_TPlot.pdf
TRINITY_DN11120_c0_g1:2055	si_a73	TRINITY_DN11120_c0_g1	2044	2064	2055	-21.90	-15.30	0.698630136986301	5	2-16,2063-2049;18-19,2047-2046	1-1,2064-2064[UP5];17-17,2048-2048[SIL];20-21,2045-2044[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	UUUAUUGAAAAAUAAUUUGAC&UUCAAAUUGUUUUUCAUUAUU	4	0.999999458546671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN11120_c0_g1_2055_TPlot.pdf
TRINITY_DN11120_c0_g1:439	si_s803	TRINITY_DN11120_c0_g1	422	448	439	-26.00	-17.00	0.653846153846154	12	2-13,447-436;14-20,429-423	1-1,448-448[UP5];x-x,435-430[BULt];21-21,422-422[UP3]	.(((((((......((((((((((((.&.))))))))))))------))))))).	UGAAGGUGCUUGGAAUGAAGAUGGAAA&AUUUUAUCUUCGU------UACCUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN11120_c0_g1_439_TPlot.pdf
TRINITY_DN11123_c0_g2:554	si_a184	TRINITY_DN11123_c0_g2	542	563	554	-31.70	-22.60	0.712933753943218	4	1-13,563-551;14-18,549-545;20-21,543-542	x-x,550-550[BULt];19-19,544-544[SIL]	((.(((((.(((((((((((((&)))))))))))))-))))).))	GACCAGGGUAAAGAUGUUAUUU&AGAUAAUAUCUUU-CCCUGUUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN11123_c0_g2_554_TPlot.pdf
TRINITY_DN11125_c0_g1:892	si_s435	TRINITY_DN11125_c0_g1	881	902	892	-20.90	-15.50	0.741626794258373	7	1-4,902-899;6-9,897-894;10-21,892-881	5-5,898-898[SIL];x-x,893-893[BULt]	((((((((((((.((((.((((&)))).))))-))))))))))))	AUAUGUGAUAUGUUAGUAGUUG&CAAUAAUUA-CAUAUUAUAUAU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN11125_c0_g1_892_TPlot.pdf
TRINITY_DN11125_c0_g1:894	si_s434	TRINITY_DN11125_c0_g1	882	903	894	-21.50	-14.50	0.674418604651163	8	2-5,902-899;7-10,897-894;11-21,892-882	1-1,903-903[UP5];6-6,898-898[SIL];x-x,893-893[BULt]	(((((((((((.((((.((((.&.)))).))))-)))))))))))	UAUGUGAUAUGUUAGUAGUUGG&ACAAUAAUUA-CAUAUUAUAUA	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN11125_c0_g1_894_TPlot.pdf
TRINITY_DN11132_c0_g1:358	si_a323	TRINITY_DN11132_c0_g1	346	367	358	-26.80	-17.50	0.652985074626866	9.5	1-6,367-362;9-16,359-352;17-19,350-348	7-8,361-360[SIL];x-x,351-351[BULt];20-21,347-346[UP3]	..(((.((((((((..((((((&))))))..))))))))-)))..	AUGGAUGUAAGAGAGGCAUGGA&UCCAUGAUUUUUUUAU-UCCUU	2	0.999996736926663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN11132_c0_g1_358_TPlot.pdf
TRINITY_DN11132_c0_g1:359	si_a322	TRINITY_DN11132_c0_g1	347	368	359	-27.00	-18.80	0.696296296296296	8	1-7,368-362;10-17,359-352;18-20,350-348	8-9,361-360[SIL];x-x,351-351[BULt];21-21,347-347[UP3]	.(((.((((((((..(((((((&)))))))..))))))))-))).	UGGAUGUAAGAGAGGCAUGGAU&AUCCAUGAUUUUUUUAU-UCCU	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN11132_c0_g1_359_TPlot.pdf
TRINITY_DN11132_c0_g1:362	si_a319	TRINITY_DN11132_c0_g1	351	371	362	-22.40	-18.20	0.8125	6.5	1-10,371-362;13-20,359-352	11-12,361-360[SIL];21-21,351-351[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	UGUAAGAGAGGCAUGGAUAAA&UUUAUCCAUGAUUUUUUUAUU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN11132_c0_g1_362_TPlot.pdf
TRINITY_DN11132_c0_g1:363	si_a318	TRINITY_DN11132_c0_g1	352	372	363	-22.50	-18.20	0.808888888888889	5.5	2-11,371-362;14-21,359-352	1-1,372-372[UP5];12-13,361-360[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	GUAAGAGAGGCAUGGAUAAAA&AUUUAUCCAUGAUUUUUUUAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN11132_c0_g1_363_TPlot.pdf
TRINITY_DN11132_c0_g1:364	si_a317	TRINITY_DN11132_c0_g1	353	373	364	-24.30	-16.90	0.695473251028807	6	3-12,371-362;15-21,359-353	1-2,373-372[UP5];13-14,361-360[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	UAAGAGAGGCAUGGAUAAAAC&GAUUUAUCCAUGAUUUUUUUA	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN11132_c0_g1_364_TPlot.pdf
TRINITY_DN11132_c0_g2:219	si_s69	TRINITY_DN11132_c0_g2	207	228	219	-23.40	-15.60	0.666666666666667	7.5	2-7,227-222;9-11,220-218;12-21,216-207	1-1,228-228[UP5];8-8,221-221[SIL];x-x,217-217[BULt]	((((((((((.(((.((((((.&.)))))).)))-))))))))))	GAAGGAAAAAUAAACGGGAGUA&AACUUCUAUUU-UUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11132_c0_g2_219_TPlot.pdf
TRINITY_DN11132_c0_g2:2648	si_s876	TRINITY_DN11132_c0_g2	2637	2657	2648	-24.20	-16.40	0.677685950413223	8	1-3,2657-2655;5-15,2653-2643	4-4,2654-2654[SIL];16-21,2642-2637[UP3]	......(((((((((((.(((&))).)))))))))))......	UUCCUAUUUUAGUUCUAUGAC&GUCUUAGAACUAAAAAUAAAU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN11132_c0_g2_2648_TPlot.pdf
TRINITY_DN11132_c1_g1:842	si_s8	TRINITY_DN11132_c1_g1	831	853	842	-21.30	-14.30	0.671361502347418	11	1-7,853-847;9-20,843-832	8-8,846-844[AILt];21-21,831-831[UP3]	.((((((((((((...(((((((&)))))))--.)))))))))))).	CAUGUAGUGAUAGCAAAGGUAGU&AUUACUU--AUUAUUACUAUAUU	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN11132_c1_g1_842_TPlot.pdf
TRINITY_DN11132_c1_g1:843	si_s7	TRINITY_DN11132_c1_g1	832	854	843	-21.70	-15.60	0.71889400921659	10	1-8,854-847;10-21,843-832	9-9,846-844[AILt]	((((((((((((...((((((((&))))))))--.))))))))))))	AUGUAGUGAUAGCAAAGGUAGUA&UAUUACUU--AUUAUUACUAUAU	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN11132_c1_g1_843_TPlot.pdf
TRINITY_DN11132_c1_g1:866	si_a788	TRINITY_DN11132_c1_g1	855	876	866	-24.80	-18.10	0.729838709677419	6	1-4,876-873;5-14,871-862;17-20,859-856	x-x,872-872[BULt];15-16,861-860[SIL];21-21,855-855[UP3]	.((((..((((((((((.((((&))))-))))))))))..)))).	GUGGAUUAUAGAAGAAUAAGAA&UUCU-AUUUUUCUAUUUUCCAA	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN11132_c1_g1_866_TPlot.pdf
TRINITY_DN11136_c2_g1:274	si_s482	TRINITY_DN11136_c2_g1	263	282	274	-21.20	-14.00	0.660377358490566	9	3-6,280-277;8-21,276-263	1-2,282-281[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GUAUUUAAGUGGAU-UGGGUC&AUCCUAUAUUUAUUUAAAUAU	2	0.998333984614128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN11136_c2_g1_274_TPlot.pdf
TRINITY_DN11136_c2_g1:276	si_s480	TRINITY_DN11136_c2_g1	265	283	276	-25.00	-16.30	0.652	9	1-6,283-278;10-21,276-265	7-9,277-277[AILq]	((((((((((((.--((((((&))))))...))))))))))))	AUUUAAGUGGAUU--GGGUCC&GGAUCCUAUAUUUAUUUAAAU	1	0.102301838462011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN11136_c2_g1_276_TPlot.pdf
TRINITY_DN1113_c0_g1:437	si_a399	TRINITY_DN1113_c0_g1	423	448	437	-22.60	-14.80	0.654867256637168	8	1-7,448-442;8-13,439-434;14-21,430-423	x-x,441-440[BULt];x-x,433-431[BULt]	((((((((...((((((..(((((((&)))))))--))))))---))))))))	AUGAACAAAAAGACAAUUUUCUAUAU&AUAUAGA--AUUGUU---UUGUUUAU	2	0.999999576202239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1113_c0_g1_437_TPlot.pdf
TRINITY_DN11143_c0_g1:2135	si_s739	TRINITY_DN11143_c0_g1	2124	2144	2135	-35.60	-23.40	0.657303370786517	8.5	3-4,2142-2141;6-13,2139-2132;16-21,2129-2124	1-2,2144-2143[UP5];5-5,2140-2140[SIL];14-15,2131-2130[SIL]	((((((..((((((((.((..&..)).))))))))..))))))	GAGGUCUUUCUAUUUAGCCAC&ACGGGUGAAUAGAUUGACCUU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN11143_c0_g1_2135_TPlot.pdf
TRINITY_DN11143_c0_g1:2188	si_a143	TRINITY_DN11143_c0_g1	2173	2198	2188	-25.10	-16.40	0.653386454183267	13	1-9,2198-2190;10-12,2188-2186;13-21,2181-2173	x-x,2189-2189[BULt];x-x,2185-2182[BULt]	(((((((((....(((.(((((((((&)))))))))-)))----)))))))))	CUUAAGACGUAUUACAGGCGAUUAGU&AUUAAUCGU-UGU----UGUUUUAAG	4	0.99999997791958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN11143_c0_g1_2188_TPlot.pdf
TRINITY_DN11143_c0_g1:2864	si_a116	TRINITY_DN11143_c0_g1	2851	2873	2864	-31.10	-20.58	0.661736334405145	12	2-10,2872-2864;13-20,2859-2852	1-1,2873-2873[UP5];11-12,2863-2860[AILt];21-21,2851-2851[UP3]	.((((((((....(((((((((.&.)))))))))--..)))))))).	AGCUAUGAGGAGAAAGCUCGUGA&AUACGAGCUU--GUUUUAUAGCA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN11143_c0_g1_2864_TPlot.pdf
TRINITY_DN11143_c0_g1:2866	si_s891	TRINITY_DN11143_c0_g1	2855	2875	2866	-29.60	-19.90	0.672297297297297	15.5	8-20,2868-2856	1-7,2875-2869[UP5];21-21,2855-2855[UP3]	.(((((((((((((.......&.......))))))))))))).	AUGAGGAGAAAGCUCGUGAAG&AUAAAUAGGCUUUCUCUUCAA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN11143_c0_g1_2866_TPlot.pdf
TRINITY_DN11143_c0_g1:3272	si_s585	TRINITY_DN11143_c0_g1	3261	3281	3272	-27.00	-17.60	0.651851851851852	11.5	5-12,3277-3270;14-20,3268-3262	1-4,3281-3278[UP5];13-13,3269-3269[SIL];21-21,3261-3261[UP3]	.(((((((.((((((((....&....)))))))).))))))).	CGGAUUUGACCGUGGUUAAAU&AAAAAAUCAUGGAUAAAUCCA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN11143_c0_g1_3272_TPlot.pdf
TRINITY_DN11143_c0_g2:845	si_a832	TRINITY_DN11143_c0_g2	834	854	845	-23.10	-15.10	0.653679653679654	7.5	4-16,851-839;18-21,837-834	1-3,854-852[UP5];17-17,838-838[SIL]	((((.(((((((((((((...&...))))))))))))).))))	CAGCCUCUAUUUUUUUUUGAC&AAAGAAAAAAAAUAGAAGUUG	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a832_TRINITY_DN11143_c0_g2_845_TPlot.pdf
TRINITY_DN11149_c0_g1:217	si_s698	TRINITY_DN11149_c0_g1	206	227	217	-27.00	-18.00	0.666666666666667	8	1-6,227-222;7-7,220-220;9-21,218-206	x-x,221-221[BULt];8-8,219-219[SIL]	(((((((((((((.(.((((((&))))))-).)))))))))))))	UUCAUUAGUAGAUGGCGCUAGU&AUUAGU-CGAUUUAUUAGUGAA	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN11149_c0_g1_217_TPlot.pdf
TRINITY_DN1114_c0_g1:3381	si_a702	TRINITY_DN1114_c0_g1	3369	3390	3381	-30.80	-20.30	0.659090909090909	5	1-5,3390-3386;7-11,3384-3380;12-21,3378-3369	6-6,3385-3385[SIL];x-x,3379-3379[BULt]	((((((((((.(((((.(((((&))))).)))))-))))))))))	UAUUUUGGAACUGUAUAAGUUG&CAACUGGUACA-UUCCAAAAUA	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN1114_c0_g1_3381_TPlot.pdf
TRINITY_DN11150_c0_g1:2312	si_a468	TRINITY_DN11150_c0_g1	2301	2321	2312	-21.30	-16.90	0.793427230046948	5	1-9,2321-2313;11-20,2311-2302	10-10,2312-2312[SIL];21-21,2301-2301[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AAACGAUGAUUCCAUAUUGUA&UAUAAUAUGUAAUUAUUGUUA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN11150_c0_g1_2312_TPlot.pdf
TRINITY_DN11150_c0_g1:2313	si_a467	TRINITY_DN11150_c0_g1	2302	2322	2313	-21.10	-16.60	0.786729857819905	5	2-10,2321-2313;12-21,2311-2302	1-1,2322-2322[UP5];11-11,2312-2312[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AACGAUGAUUCCAUAUUGUAA&AUAUAAUAUGUAAUUAUUGUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN11150_c0_g1_2313_TPlot.pdf
TRINITY_DN11150_c0_g1:2314	si_a466	TRINITY_DN11150_c0_g1	2303	2323	2314	-21.50	-15.70	0.730232558139535	7	3-11,2321-2313;13-21,2311-2303	1-2,2323-2322[UP5];12-12,2312-2312[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	ACGAUGAUUCCAUAUUGUAAU&UAUAUAAUAUGUAAUUAUUGU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN11150_c0_g1_2314_TPlot.pdf
TRINITY_DN11150_c0_g1:2315	si_a465	TRINITY_DN11150_c0_g1	2304	2324	2315	-20.90	-14.40	0.688995215311005	8	4-12,2321-2313;14-21,2311-2304	1-3,2324-2322[UP5];13-13,2312-2312[SIL]	((((((((.(((((((((...&...))))))))).))))))))	CGAUGAUUCCAUAUUGUAAUA&AUAUAUAAUAUGUAAUUAUUG	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN11150_c0_g1_2315_TPlot.pdf
TRINITY_DN11150_c0_g1:2316	si_a464	TRINITY_DN11150_c0_g1	2305	2326	2316	-19.60	-13.00	0.663265306122449	5	1-5,2326-2322;6-13,2320-2313;15-21,2311-2305	x-x,2321-2321[BULt];14-14,2312-2312[SIL]	(((((((.((((((((.(((((&)))))-)))))))).)))))))	GAUGAUUCCAUAUUGUAAUAUA&UAUAU-AUAAUAUGUAAUUAUU	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN11150_c0_g1_2316_TPlot.pdf
TRINITY_DN11150_c0_g1:461	si_a403	TRINITY_DN11150_c0_g1	450	470	461	-22.00	-14.60	0.663636363636364	8.5	2-17,469-454	1-1,470-470[UP5];18-21,453-450[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACAAGUAAACAGAAUAAUUUG&AGAAUUGUUUUGUUUAUAUUU	3	0.99999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11150_c0_g1_461_TPlot.pdf
TRINITY_DN11156_c0_g1:1165	si_s685	TRINITY_DN11156_c0_g1	1154	1174	1165	-27.80	-18.30	0.658273381294964	8	3-11,1172-1164;14-20,1161-1155	1-2,1174-1173[UP5];12-13,1163-1162[SIL];21-21,1154-1154[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	UGAUUGAUAUAACUCAUGUAG&AAACAUGAGUUUAAUUAGUCG	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s685_TRINITY_DN11156_c0_g1_1165_TPlot.pdf
TRINITY_DN11156_c0_g1:1325	si_a504	TRINITY_DN11156_c0_g1	1314	1334	1325	-32.90	-21.50	0.653495440729483	10.5	4-8,1331-1327;10-20,1325-1315	1-3,1334-1332[UP5];9-9,1326-1326[SIL];21-21,1314-1314[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	GUAUUCCAAGGAUGAUGGUAU&UUUUCGUCUUCCUUGGAAUGU	4	0.99999995898401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN11156_c0_g1_1325_TPlot.pdf
TRINITY_DN11156_c0_g1:1326	si_a503	TRINITY_DN11156_c0_g1	1315	1335	1326	-32.10	-21.50	0.669781931464174	11.5	5-9,1331-1327;11-21,1325-1315	1-4,1335-1332[UP5];10-10,1326-1326[SIL]	(((((((((((.(((((....&....))))).)))))))))))	UAUUCCAAGGAUGAUGGUAUC&UUUUUCGUCUUCCUUGGAAUG	3	0.999999787662861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN11156_c0_g1_1326_TPlot.pdf
TRINITY_DN11156_c0_g1:1415	si_s634	TRINITY_DN11156_c0_g1	1404	1424	1415	-38.30	-26.80	0.699738903394256	10.5	4-19,1421-1406	1-3,1424-1422[UP5];20-21,1405-1404[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUGGGCAGAUGCUUAUGAUUU&UUUUCGUAGGCGUUUGCCCUC	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN11156_c0_g1_1415_TPlot.pdf
TRINITY_DN11156_c0_g1:1418	si_s631	TRINITY_DN11156_c0_g1	1407	1433	1418	-36.00	-24.20	0.672222222222222	16	2-6,1432-1428;7-21,1421-1407	1-1,1433-1433[UP5];x-x,1427-1422[BULt]	(((((((((((((((......(((((.&.)))))------)))))))))))))))	GGCAGAUGCUUAUGAUUUAACAAAGAA&AUCUUU------UCGUAGGCGUUUGCC	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN11156_c0_g1_1418_TPlot.pdf
TRINITY_DN11156_c0_g1:1834	si_s90	TRINITY_DN11156_c0_g1	1818	1843	1834	-35.30	-23.40	0.662889518413598	10	1-14,1843-1830;15-17,1825-1823;18-21,1821-1818	x-x,1829-1826[BULt];x-x,1822-1822[BULt]	((((.(((....((((((((((((((&))))))))))))))----)))-))))	CUGGUAGCUAUGGAGGAGGAGGAGAG&CUUUCUUCUUCUUC----GCU-UCGG	2	0.99999999718923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN11156_c0_g1_1834_TPlot.pdf
TRINITY_DN11156_c0_g1:1835	si_a784	TRINITY_DN11156_c0_g1	1824	1844	1835	-24.70	-17.60	0.712550607287449	9	1-8,1844-1837;10-18,1835-1827	9-9,1836-1836[SIL];19-21,1826-1824[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GCUAUGGAGGAGGAGGAGAGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999936101297008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11156_c0_g1_1835_TPlot.pdf
TRINITY_DN11156_c0_g1:1836	si_a783	TRINITY_DN11156_c0_g1	1825	1845	1836	-24.70	-17.80	0.720647773279352	8.5	2-9,1844-1837;11-19,1835-1827	1-1,1845-1845[UP5];10-10,1836-1836[SIL];20-21,1826-1825[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CUAUGGAGGAGGAGGAGAGUA&AACUCUUCUAUUUUUCUAUUU	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN11156_c0_g1_1836_TPlot.pdf
TRINITY_DN11156_c0_g1:1837	si_a782	TRINITY_DN11156_c0_g1	1826	1846	1837	-26.40	-17.80	0.674242424242424	9.5	3-10,1844-1837;12-20,1835-1827	1-2,1846-1845[UP5];11-11,1836-1836[SIL];21-21,1826-1826[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UAUGGAGGAGGAGGAGAGUAC&CAACUCUUCUAUUUUUCUAUU	3	0.999999718089584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN11156_c0_g1_1837_TPlot.pdf
TRINITY_DN11156_c0_g1:1871	si_s536	TRINITY_DN11156_c0_g1	1860	1880	1871	-27.70	-18.10	0.653429602888087	7.5	1-4,1880-1877;5-9,1875-1871;11-21,1870-1860	x-x,1876-1876[BULt];10-10,x-x[BULq]	(((((((((((-(((((.((((&))))-))))).)))))))))))	GUUUUGGUUGG-UCAAAUGGUG&CAUU-UUUGAUCCGAUCAAAAU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN11156_c0_g1_1871_TPlot.pdf
TRINITY_DN11156_c0_g1:2010	si_s434	TRINITY_DN11156_c0_g1	1999	2022	2010	-21.50	-14.42	0.670697674418605	12	1-6,2022-2017;9-20,2011-2000	7-8,2016-2012[AILt];21-21,1999-1999[UP3]	.((((((((((((.....((((((&))))))---..)))))))))))).	AAUAUAAUAUGUAUAGUAUGUUGU&ACAAUA---AUUACAUAUUAUAUA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN11156_c0_g1_2010_TPlot.pdf
TRINITY_DN11156_c0_g1:2016	si_s437	TRINITY_DN11156_c0_g1	2005	2025	2016	-19.70	-13.40	0.680203045685279	13.5	7-20,2019-2006	1-6,2025-2020[UP5];21-21,2005-2005[UP3]	.((((((((((((((......&......)))))))))))))).	AUAUGUAUAGUAUGUUGUAAU&AUAAUUACAUAUUAUAUAUAA	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN11156_c0_g1_2016_TPlot.pdf
TRINITY_DN11156_c0_g1:2017	si_s436	TRINITY_DN11156_c0_g1	2006	2026	2017	-19.60	-13.20	0.673469387755102	14	8-21,2019-2006	1-7,2026-2020[UP5]	((((((((((((((.......&.......))))))))))))))	UAUGUAUAGUAUGUUGUAAUA&AAUAAUUACAUAUUAUAUAUA	2	0.998582868378132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN11156_c0_g1_2017_TPlot.pdf
TRINITY_DN1115_c0_g2:1201	si_a426	TRINITY_DN1115_c0_g2	1186	1210	1201	-31.80	-21.20	0.666666666666667	14.5	2-7,1209-1204;10-11,1201-1200;12-21,1195-1186	1-1,1210-1210[UP5];8-9,1203-1202[SIL];x-x,1199-1196[BULt]	((((((((((....((..((((((.&.))))))..))----))))))))))	UCCAGCGGAUGAAGCCGUUGUUUAA&AUAAAUAUAGG----AUCCGUUGGA	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN1115_c0_g2_1201_TPlot.pdf
TRINITY_DN1115_c0_g2:518	si_a312	TRINITY_DN1115_c0_g2	507	528	518	-31.20	-20.80	0.666666666666667	9	1-3,528-526;4-15,524-513	x-x,525-525[BULt];16-21,512-507[UP3]	......((((((((((((.(((&)))-))))))))))))......	UAACUUUGGAUAGAUCCAUAGC&GCU-UGGAUUUAUCCAUGAUUU	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN1115_c0_g2_518_TPlot.pdf
TRINITY_DN11161_c3_g1:743	si_s532	TRINITY_DN11161_c3_g1	732	752	743	-28.70	-18.70	0.651567944250871	10.5	5-17,748-736;20-21,733-732	1-4,752-749[UP5];18-19,735-734[SIL]	((..(((((((((((((....&....)))))))))))))..))	UGUCCGGGUCAGAAAUGUGGU&AAAUCAUUUUUGAUCCGAUCA	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN11161_c3_g1_743_TPlot.pdf
TRINITY_DN11164_c0_g1:1422	si_a77	TRINITY_DN11164_c0_g1	1411	1431	1422	-22.20	-14.70	0.662162162162162	8.5	4-17,1428-1415;20-21,1412-1411	1-3,1431-1429[UP5];18-19,1414-1413[SIL]	((..((((((((((((((...&...))))))))))))))..))	UCGCAGUAAUGAAAAACGCUU&AAUUGUUUUUCAUUAUUAAGA	4	0.999999960642865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN11164_c0_g1_1422_TPlot.pdf
TRINITY_DN11169_c0_g1:26	si_s79	TRINITY_DN11169_c0_g1	14	35	26	-26.20	-19.60	0.748091603053435	6.5	1-11,35-25;12-13,23-22;15-21,20-14	x-x,24-24[BULt];14-14,21-21[SIL]	(((((((.((.(((((((((((&)))))))))))-)).)))))))	GAGGAGACGGCGAAGGAAAGAA&UUUUUUCUUUC-CUUUCUUCUU	4	0.999999999999273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11169_c0_g1_26_TPlot.pdf
TRINITY_DN11169_c0_g1:27	si_s82	TRINITY_DN11169_c0_g1	14	36	27	-28.90	-21.10	0.730103806228374	6	1-12,36-25;13-14,23-22;15-21,20-14	x-x,24-24[BULt];x-x,21-21[BULt]	(((((((.((.((((((((((((&))))))))))))-))-)))))))	GAGGAGACGGCGAAGGAAAGAAG&UUUCUUUCCUUU-CU-UCUUCUU	4	0.999999999999432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11169_c0_g1_27_TPlot.pdf
TRINITY_DN1116_c0_g1:1200	si_s78	TRINITY_DN1116_c0_g1	1188	1209	1200	-26.20	-17.80	0.679389312977099	8.5	3-14,1207-1196;17-21,1192-1188	1-2,1209-1208[UP5];15-16,1195-1193[AILt]	(((((...((((((((((((..&..))))))))))))-..)))))	AGAAGUCUGGGAAAGAAAGGUA&UUUUUUUCUUUCCU-UUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1116_c0_g1_1200_TPlot.pdf
TRINITY_DN1116_c0_g1:2090	si_s613	TRINITY_DN1116_c0_g1	2077	2099	2090	-29.20	-19.00	0.650684931506849	7	1-11,2099-2089;12-13,2087-2086;15-17,2083-2081;19-21,2079-2077	x-x,2088-2088[BULt];14-14,2085-2084[AILt];18-18,2080-2080[SIL]	(((.(((..((.(((((((((((&)))))))))))-))-.))).)))	GAUGGCUAGGGCAUUUAGAAAGG&CUUUUUUAAAU-CC-AAGCGAUC	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN1116_c0_g1_2090_TPlot.pdf
TRINITY_DN1116_c0_g1:2093	si_s610	TRINITY_DN1116_c0_g1	2080	2102	2093	-27.20	-17.70	0.650735294117647	7	2-14,2101-2089;15-16,2087-2086;18-20,2083-2081	1-1,2102-2102[UP5];x-x,2088-2088[BULt];17-17,2085-2084[AILt];21-21,2080-2080[UP3]	.(((..((.(((((((((((((.&.)))))))))))))-))-.))).	GGCUAGGGCAUUUAGAAAGGAUG&AAUCUUUUUUAAAU-CC-AAGCG	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN1116_c0_g1_2093_TPlot.pdf
TRINITY_DN11175_c0_g1:604	si_s69	TRINITY_DN11175_c0_g1	592	613	604	-23.40	-15.40	0.658119658119658	9	3-16,611-598;17-19,596-594	1-2,613-612[UP5];x-x,597-597[BULt];20-21,593-592[UP3]	..(((.((((((((((((((..&..))))))))))))))-)))..	AUGAGCAGAAAGAGUAGAAGCC&AACUUCUAUUUUUUUU-CUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11175_c0_g1_604_TPlot.pdf
TRINITY_DN11175_c0_g1:605	si_s68	TRINITY_DN11175_c0_g1	593	614	605	-23.10	-15.40	0.666666666666667	10	4-17,611-598;18-20,596-594	1-3,614-612[UP5];x-x,597-597[BULt];21-21,593-593[UP3]	.(((.((((((((((((((...&...))))))))))))))-))).	UGAGCAGAAAGAGUAGAAGCCG&CAACUUCUAUUUUUUUU-CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11175_c0_g1_605_TPlot.pdf
TRINITY_DN11175_c0_g1:606	si_s67	TRINITY_DN11175_c0_g1	594	615	606	-25.60	-17.60	0.6875	7.5	1-2,615-614;5-18,611-598;19-21,596-594	3-4,613-612[SIL];x-x,597-597[BULt]	(((.((((((((((((((..((&))..))))))))))))))-)))	GAGCAGAAAGAGUAGAAGCCGC&GCAACUUCUAUUUUUUUU-CUU	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN11175_c0_g1_606_TPlot.pdf
TRINITY_DN11175_c0_g1:609	si_s64	TRINITY_DN11175_c0_g1	598	618	609	-24.10	-15.80	0.655601659751037	10.5	4-5,615-614;8-21,611-598	1-3,618-616[UP5];6-7,613-612[SIL]	((((((((((((((..((...&...))..))))))))))))))	AGAAAGAGUAGAAGCCGCAGU&UUAGCAACUUCUAUUUUUUUU	4	0.999999999999842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN11175_c0_g1_609_TPlot.pdf
TRINITY_DN11178_c0_g1:1359	si_s25	TRINITY_DN11178_c0_g1	1346	1368	1359	-27.10	-17.70	0.653136531365314	9	1-11,1368-1358;12-16,1355-1351;18-20,1349-1347	x-x,1357-1356[BULt];17-17,1350-1350[SIL];21-21,1346-1346[UP3]	.(((.(((((..(((((((((((&)))))))))))--))))).))).	CGGACUUGGUUUUGCAAUCGGUA&UAUUGAUUGCA--ACUAAAUCUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN11178_c0_g1_1359_TPlot.pdf
TRINITY_DN11178_c0_g1:1362	si_s22	TRINITY_DN11178_c0_g1	1349	1371	1362	-26.70	-20.30	0.760299625468165	7.5	1-14,1371-1358;15-19,1355-1351	x-x,1357-1356[BULt];20-21,1350-1349[UP3]	..(((((..((((((((((((((&))))))))))))))--)))))..	ACUUGGUUUUGCAAUCGGUAUGG&CUAUAUUGAUUGCA--ACUAAAU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN11178_c0_g1_1362_TPlot.pdf
TRINITY_DN11178_c0_g1:2546	si_a895	TRINITY_DN11178_c0_g1	2535	2555	2546	-21.70	-15.20	0.700460829493088	11	4-15,2552-2541;17-20,2539-2536	1-3,2555-2553[UP5];16-16,2540-2540[SIL];21-21,2535-2535[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	GAUGUAGCUUGUUGUUGCAUG&AUAGUAAUAAUAAGUAAUAUA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN11178_c0_g1_2546_TPlot.pdf
TRINITY_DN11178_c0_g1:58	si_a668	TRINITY_DN11178_c0_g1	43	66	58	-33.20	-22.48	0.67710843373494	9.5	1-4,66-63;6-13,62-55;15-21,49-43	5-5,x-x[BULq];14-14,54-50[AILt]	(((((((.....((((((((-((((&)))).))))))))----.)))))))	GUGAGUAUUGCUGGAGUCAG-AGGC&GCCUAUUGAUUCC----UUAUUCAC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN11178_c0_g1_58_TPlot.pdf
TRINITY_DN11178_c0_g1:893	si_s148	TRINITY_DN11178_c0_g1	882	902	893	-34.80	-23.20	0.666666666666667	9.5	4-6,899-897;8-19,895-884	1-3,902-900[UP5];7-7,896-896[SIL];20-21,883-882[UP3]	..((((((((((((.(((...&...))).))))))))))))..	AUUGGACCUCCUUUUGGUGGU&AAAACCCAAAGGAGGUUCAUG	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s148_TRINITY_DN11178_c0_g1_893_TPlot.pdf
TRINITY_DN11178_c0_g1:894	si_s147	TRINITY_DN11178_c0_g1	883	903	894	-33.10	-23.20	0.700906344410876	10.5	5-7,899-897;9-20,895-884	1-4,903-900[UP5];8-8,896-896[SIL];21-21,883-883[UP3]	.((((((((((((.(((....&....))).)))))))))))).	UUGGACCUCCUUUUGGUGGUG&AAAAACCCAAAGGAGGUUCAU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN11178_c0_g1_894_TPlot.pdf
TRINITY_DN1117_c0_g1:1474	si_a319	TRINITY_DN1117_c0_g1	1463	1483	1474	-22.40	-14.60	0.651785714285714	13	5-18,1479-1466	1-4,1483-1480[UP5];19-21,1465-1463[UP3]	...((((((((((((((....&....))))))))))))))...	AAAGAGAGGAUUAUGGAACGU&UUUAUCCAUGAUUUUUUUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1117_c0_g1_1474_TPlot.pdf
TRINITY_DN1117_c0_g1:1678	si_a645	TRINITY_DN1117_c0_g1	1660	1687	1678	-29.40	-19.50	0.663265306122449	10	2-13,1686-1675;15-21,1666-1660	1-1,1687-1687[UP5];14-14,1674-1667[AILt]	(((((((........((((((((((((.&.))))))))))))-------.)))))))	UUCCCGACAAUUACGAUAUUACUCGAAC&UUUUGAGUAAUAU-------AUCGGGAA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN1117_c0_g1_1678_TPlot.pdf
TRINITY_DN1117_c0_g1:1733	si_a791	TRINITY_DN1117_c0_g1	1724	1741	1733	-26.50	-18.90	0.713207547169811	9.5	1-9,1741-1733;13-21,1732-1724	10-12,x-x[BULq]	(((((((((---(((((((((&)))))))))...)))))))))	GGAUUGGGA---AGAGAGGUA&UAUUUUUCUAUUUUCCAAUCC	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1117_c0_g1_1733_TPlot.pdf
TRINITY_DN1117_c0_g1:3262	si_a413	TRINITY_DN1117_c0_g1	3251	3271	3262	-18.40	-12.30	0.668478260869565	8	1-9,3271-3263;12-18,3260-3254	10-11,3262-3261[SIL];19-21,3253-3251[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	AUUUUUAUUUUUAUAUAAGCA&UGUUUAUAUUUAAAUAAAUAU	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN1117_c0_g1_3262_TPlot.pdf
TRINITY_DN1117_c0_g1:3263	si_a412	TRINITY_DN1117_c0_g1	3252	3272	3263	-18.30	-13.20	0.721311475409836	7	1-10,3272-3263;13-19,3260-3254	11-12,3262-3261[SIL];20-21,3253-3252[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	UUUUUAUUUUUAUAUAAGCAA&UUGUUUAUAUUUAAAUAAAUA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN1117_c0_g1_3263_TPlot.pdf
TRINITY_DN1117_c0_g1:3264	si_a411	TRINITY_DN1117_c0_g1	3253	3273	3264	-17.90	-13.90	0.776536312849162	5	1-11,3273-3263;14-20,3260-3254	12-13,3262-3261[SIL];21-21,3253-3253[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	UUUUAUUUUUAUAUAAGCAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1117_c0_g1_3264_TPlot.pdf
TRINITY_DN1117_c0_g1:3265	si_a410	TRINITY_DN1117_c0_g1	3254	3274	3265	-17.80	-13.90	0.780898876404494	4	2-12,3273-3263;15-21,3260-3254	1-1,3274-3274[UP5];13-14,3262-3261[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	UUUAUUUUUAUAUAAGCAAAC&UUUUGUUUAUAUUUAAAUAAA	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1117_c0_g1_3265_TPlot.pdf
TRINITY_DN1117_c0_g1:3266	si_a409	TRINITY_DN1117_c0_g1	3255	3276	3266	-19.50	-13.10	0.671794871794872	5	1-2,3276-3275;3-13,3273-3263;16-21,3260-3255	x-x,3274-3274[BULt];14-15,3262-3261[SIL]	((((((..(((((((((((.((&))-)))))))))))..))))))	UUAUUUUUAUAUAAGCAAACAC&GU-UUUGUUUAUAUUUAAAUAA	4	0.999999999995709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1117_c0_g1_3266_TPlot.pdf
TRINITY_DN1117_c0_g1:797	si_a784	TRINITY_DN1117_c0_g1	786	807	797	-24.70	-16.10	0.651821862348178	11	2-8,806-800;10-19,797-788	1-1,807-807[UP5];9-9,799-798[AILt];20-21,787-786[UP3]	..((((((((((..(((((((.&.)))))))-.))))))))))..	UCGGUAGAAGAAAAAGAGGGGG&ACUCUUCU-AUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1117_c0_g1_797_TPlot.pdf
TRINITY_DN1117_c0_g1:798	si_a783	TRINITY_DN1117_c0_g1	787	808	798	-24.70	-16.10	0.651821862348178	11.5	3-9,806-800;11-20,797-788	1-2,808-807[UP5];10-10,799-798[AILt];21-21,787-787[UP3]	.((((((((((..(((((((..&..)))))))-.)))))))))).	CGGUAGAAGAAAAAGAGGGGGA&AACUCUUCU-AUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1117_c0_g1_798_TPlot.pdf
TRINITY_DN11181_c0_g1:1115	si_s519	TRINITY_DN11181_c0_g1	1104	1124	1115	-24.40	-16.00	0.655737704918033	5	1-5,1124-1120;7-14,1118-1111;17-21,1108-1104	6-6,1119-1119[SIL];15-16,1110-1109[SIL]	(((((..((((((((.(((((&))))).))))))))..)))))	AAUGACAUCGAGUUACGAAUA&UAUUCUUAAUUCGAAAUCAUU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN11181_c0_g1_1115_TPlot.pdf
TRINITY_DN11181_c0_g1:1458	si_s436	TRINITY_DN11181_c0_g1	1446	1467	1458	-19.60	-12.80	0.653061224489796	11.5	5-10,1463-1458;11-20,1456-1447	1-4,1467-1464[UP5];x-x,1457-1457[BULt];21-21,1446-1446[UP3]	.((((((((((.((((((....&....))))))-)))))))))).	AGUAUGUGAUACUGUAAUGGUU&AAUAAUUACA-UAUUAUAUAUA	3	0.999999141658786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN11181_c0_g1_1458_TPlot.pdf
TRINITY_DN11181_c0_g1:284	si_a756	TRINITY_DN11181_c0_g1	273	293	284	-33.10	-21.60	0.652567975830816	12	3-7,291-287;10-19,284-275	1-2,293-292[UP5];8-9,286-285[SIL];20-21,274-273[UP3]	..((((((((((..(((((..&..)))))..))))))))))..	ACCAAGAGCUUAUUGGAGGGA&AACCUCCUUUGGGUUUUUGAU	4	0.999999999956687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN11181_c0_g1_284_TPlot.pdf
TRINITY_DN11181_c0_g1:538	si_s49	TRINITY_DN11181_c0_g1	523	547	538	-29.30	-20.20	0.689419795221843	16	4-12,544-536;13-20,531-524	1-3,547-545[UP5];x-x,535-532[BULt];21-21,523-523[UP3]	.((((((((....(((((((((...&...)))))))))----)))))))).	AGCUGGCUUUUGAGAGAUCCAAAGA&UAAUUGGAUUUC----AAGUUAGCA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN11181_c0_g1_538_TPlot.pdf
TRINITY_DN11181_c0_g1:539	si_s48	TRINITY_DN11181_c0_g1	524	548	539	-28.80	-19.70	0.684027777777778	13	5-13,544-536;14-21,531-524	1-4,548-545[UP5];x-x,535-532[BULt]	((((((((....(((((((((....&....)))))))))----))))))))	GCUGGCUUUUGAGAGAUCCAAAGAU&AUAAUUGGAUUUC----AAGUUAGC	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN11181_c0_g1_539_TPlot.pdf
TRINITY_DN11182_c0_g1:722	si_s797	TRINITY_DN11182_c0_g1	709	732	722	-30.00	-21.80	0.726666666666667	8	1-3,732-730;4-15,728-717;16-21,714-709	x-x,729-729[BULt];x-x,716-715[BULt]	((((((..((((((((((((.(((&)))-))))))))))))--))))))	UGGCGACGGGGUAGAAUACGUGGC&GCU-CGUAUUUUAUCU--UCGUUA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN11182_c0_g1_722_TPlot.pdf
TRINITY_DN11188_c0_g2:1696	si_a142	TRINITY_DN11188_c0_g2	1685	1705	1696	-23.50	-15.90	0.676595744680851	12.5	5-17,1701-1689	1-4,1705-1702[UP5];18-21,1688-1685[UP3]	....(((((((((((((....&....)))))))))))))....	AAUCGACGGCAACGAUUUGCC&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999958439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN11188_c0_g2_1696_TPlot.pdf
TRINITY_DN11188_c1_g1:534	si_a894	TRINITY_DN11188_c1_g1	523	544	534	-21.70	-14.70	0.67741935483871	9	5-7,540-538;8-21,536-523	1-4,544-541[UP5];x-x,537-537[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	AUAUUACUUAUUAUCUACAGAG&UAUAGUA-AUAAUAAGUAAUAU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN11188_c1_g1_534_TPlot.pdf
TRINITY_DN1118_c0_g1:1073	si_s87	TRINITY_DN1118_c0_g1	1062	1086	1073	-32.90	-22.60	0.68693009118541	13.5	4-9,1083-1078;10-21,1073-1062	1-3,1086-1084[UP5];x-x,1077-1074[BULt]	((((((((((((....((((((...&...))))))----))))))))))))	AAGCGAGGAAGAAAAAAGAAAGUCA&UUCCUUUCU----UCUUCUUCGCUU	2	0.999999996736461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1118_c0_g1_1073_TPlot.pdf
TRINITY_DN11193_c0_g1:1214	si_a329	TRINITY_DN11193_c0_g1	1202	1223	1214	-29.60	-21.80	0.736486486486487	9	2-15,1222-1209;17-21,1206-1202	1-1,1223-1223[UP5];16-16,1208-1207[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	UGGGAAGGAGGAGUGAGAGGAG&AUUUUUUUAUUCCUU-GUCCCG	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN11193_c0_g1_1214_TPlot.pdf
TRINITY_DN11193_c0_g1:1215	si_a67	TRINITY_DN11193_c0_g1	1205	1224	1215	-27.20	-20.20	0.742647058823529	8.5	1-10,1224-1215;13-14,1213-1212;16-21,1210-1205	11-12,1214-1214[AILq];15-15,1211-1211[SIL]	((((((.((.-((((((((((&))))))))))..)).))))))	GAAGGAGGAG-UGAGAGGAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN11193_c0_g1_1215_TPlot.pdf
TRINITY_DN11193_c0_g1:1244	si_s43	TRINITY_DN11193_c0_g1	1232	1253	1244	-25.50	-16.80	0.658823529411765	5	2-9,1252-1245;11-19,1243-1235;20-21,1233-1232	1-1,1253-1253[UP5];10-10,1244-1244[SIL];x-x,1234-1234[BULt]	((.(((((((((.((((((((.&.)))))))).)))))))))-))	CUAUGGAGUCCACUUAUUAAAA&CUUUAAUAAUUGGAUUUCA-AG	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN11193_c0_g1_1244_TPlot.pdf
TRINITY_DN11195_c0_g1:421	si_a403	TRINITY_DN11195_c0_g1	410	430	421	-22.00	-14.50	0.659090909090909	9	2-15,429-416	1-1,430-430[UP5];16-21,415-410[UP3]	......((((((((((((((.&.))))))))))))))......	UAAUUAAAACAGAAUAAUUCA&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11195_c0_g1_421_TPlot.pdf
TRINITY_DN11196_c0_g1:310	si_s156	TRINITY_DN11196_c0_g1	280	319	310	-44.40	-30.80	0.693693693693694	39.5	1-11,319-309;12-21,289-280	x-x,308-290[BULt]	((((((((((...................(((((((((((&)))))))))))-------------------))))))))))	UCCCUGGCCGAAAGGCCCGGGUAACCCGCUGAACCUCCUU&AAGGAGGUUCA-------------------UGGCCAGGGG	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s156_TRINITY_DN11196_c0_g1_310_TPlot.pdf
TRINITY_DN11196_c0_g1:311	si_s155	TRINITY_DN11196_c0_g1	281	320	311	-42.00	-29.90	0.711904761904762	39.5	2-12,319-309;13-21,289-281	1-1,320-320[UP5];x-x,308-290[BULt]	(((((((((...................(((((((((((.&.)))))))))))-------------------)))))))))	CCCUGGCCGAAAGGCCCGGGUAACCCGCUGAACCUCCUUC&AAAGGAGGUUCA-------------------UGGCCAGGG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN11196_c0_g1_311_TPlot.pdf
TRINITY_DN11196_c0_g1:38	si_s563	TRINITY_DN11196_c0_g1	27	47	38	-30.80	-21.60	0.701298701298701	13	6-9,42-39;11-20,37-28	1-5,47-43[UP5];10-10,38-38[SIL];21-21,27-27[UP3]	.((((((((((.((((.....&.....)))).)))))))))).	UUUCCUUGUCCGGAAGGACUG&AAUAUUUUCGGGACAAGGAAU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN11196_c0_g1_38_TPlot.pdf
TRINITY_DN11197_c0_g1:161	si_s73	TRINITY_DN11197_c0_g1	149	170	161	-24.00	-17.00	0.708333333333333	7.5	1-10,170-161;12-14,159-157;15-21,155-149	11-11,160-160[SIL];x-x,156-156[BULt]	(((((((.(((.((((((((((&)))))))))).)))-)))))))	AGGGGAGCAGACAAAGAGUGGA&UCUAUUUUUUUUCU-UUCCUUU	2	0.999999999958654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11197_c0_g1_161_TPlot.pdf
TRINITY_DN11197_c1_g1:542	si_a592	TRINITY_DN11197_c1_g1	532	551	542	-32.80	-22.22	0.677439024390244	6	1-12,551-540;17-20,536-533	13-16,539-537[AILq];21-21,532-532[UP3]	.((((...-((((((((((((&))))))))))))....)))).	CGCGAUUC-UCUGUCCUUUUU&AAGAAGGACAGAAUUUUCGCA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN11197_c1_g1_542_TPlot.pdf
TRINITY_DN11197_c2_g1:1244	si_a413	TRINITY_DN11197_c2_g1	1233	1253	1244	-18.40	-12.00	0.652173913043478	6	1-12,1253-1242;15-18,1239-1236	13-14,1241-1240[SIL];19-21,1235-1233[UP3]	...((((..((((((((((((&))))))))))))..))))...	GUUUUUAGAUAAAUAUGAACA&UGUUUAUAUUUAAAUAAAUAU	2	0.999888125717722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN11197_c2_g1_1244_TPlot.pdf
TRINITY_DN11197_c2_g1:1245	si_a412	TRINITY_DN11197_c2_g1	1234	1254	1245	-18.30	-12.10	0.66120218579235	6	2-13,1253-1242;16-19,1239-1236	1-1,1254-1254[UP5];14-15,1241-1240[SIL];20-21,1235-1234[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	UUUUUAGAUAAAUAUGAACAC&UUGUUUAUAUUUAAAUAAAUA	3	0.99999950308576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN11197_c2_g1_1245_TPlot.pdf
TRINITY_DN1119_c1_g1:51	si_a814	TRINITY_DN1119_c1_g1	40	60	51	-32.90	-21.40	0.650455927051672	9	4-17,57-44	1-3,60-58[UP5];18-21,43-40[UP3]	....((((((((((((((...&...))))))))))))))....	GUUACUUUCUUCUUCUUCUAU&AGCGAAGAAGAAGAAAGGAAA	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN1119_c1_g1_51_TPlot.pdf
TRINITY_DN1119_c1_g1:52	si_a813	TRINITY_DN1119_c1_g1	41	61	52	-32.90	-21.40	0.650455927051672	10	5-18,57-44	1-4,61-58[UP5];19-21,43-41[UP3]	...((((((((((((((....&....))))))))))))))...	UUACUUUCUUCUUCUUCUAUU&AAGCGAAGAAGAAGAAAGGAA	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN1119_c1_g1_52_TPlot.pdf
TRINITY_DN1119_c1_g1:54	si_a811	TRINITY_DN1119_c1_g1	43	63	54	-35.30	-23.60	0.668555240793201	6	1-4,63-60;7-20,57-44	5-6,59-58[SIL];21-21,43-43[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	ACUUUCUUCUUCUUCUAUUUG&CGAAGCGAAGAAGAAGAAAGG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a811_TRINITY_DN1119_c1_g1_54_TPlot.pdf
TRINITY_DN111_c0_g1:1922	si_a289	TRINITY_DN111_c0_g1	1911	1931	1922	-28.20	-18.40	0.652482269503546	10	1-12,1931-1920	13-21,1919-1911[UP3]	.........((((((((((((&)))))))))))).........	AGCUCAGGCAAGUCCAAGCGA&UCGCUUGGAUUUAAAAAAGAU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN111_c0_g1_1922_TPlot.pdf
TRINITY_DN111_c0_g1:1927	si_a284	TRINITY_DN111_c0_g1	1916	1936	1927	-28.30	-18.40	0.65017667844523	13.5	6-17,1931-1920	1-5,1936-1932[UP5];18-21,1919-1916[UP3]	....((((((((((((.....&.....))))))))))))....	AGGCAAGUCCAAGCGAGCAAA&AAAGAUCGCUUGGAUUUAAAA	4	0.999999092842712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN111_c0_g1_1927_TPlot.pdf
TRINITY_DN111_c0_g1:2188	si_a799	TRINITY_DN111_c0_g1	2177	2197	2188	-32.50	-21.60	0.664615384615385	12.5	5-8,2193-2190;10-20,2188-2178	1-4,2197-2194[UP5];9-9,2189-2189[SIL];21-21,2177-2177[UP3]	.(((((((((((.((((....&....)))).))))))))))).	GUCGCUUUGGGUAGGAGCUAU&UAUUUUCCAAUCCGAAGCGAA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN111_c0_g1_2188_TPlot.pdf
TRINITY_DN111_c0_g1:2437	si_s76	TRINITY_DN111_c0_g1	2423	2446	2437	-23.60	-15.90	0.673728813559322	7.5	2-12,2445-2435;13-17,2433-2429;18-21,2426-2423	1-1,2446-2446[UP5];x-x,2434-2434[BULt];x-x,2428-2427[BULt]	((((..(((((.(((((((((((.&.)))))))))))-)))))--))))	GAGAAAAAGGAUAAGAAGAAGAAA&AUUUUUUUUCUU-UCCUU--UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN111_c0_g1_2437_TPlot.pdf
TRINITY_DN111_c0_g1:2446	si_s82	TRINITY_DN111_c0_g1	2435	2455	2446	-28.90	-18.80	0.650519031141869	7	2-7,2454-2449;10-21,2446-2435	1-1,2455-2455[UP5];8-9,2448-2447[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	AAGAAGAAGAAAAAGAAGAGC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN111_c0_g1_2446_TPlot.pdf
TRINITY_DN111_c0_g1:2551	si_s701	TRINITY_DN111_c0_g1	2539	2560	2551	-30.50	-20.30	0.665573770491803	8	2-6,2559-2555;8-14,2553-2547;15-19,2545-2541	1-1,2560-2560[UP5];7-7,2554-2554[SIL];x-x,2546-2546[BULt];20-21,2540-2539[UP3]	..(((((.(((((((.(((((.&.))))).)))))))-)))))..	GAGUUCAUCUAGUGAUUCGACC&AGUCGAUUUAUUAG-UGAACAG	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN111_c0_g1_2551_TPlot.pdf
TRINITY_DN111_c0_g1:3001	si_s71	TRINITY_DN111_c0_g1	2987	3010	3001	-25.70	-17.00	0.66147859922179	12	1-10,3010-3001;11-19,2997-2989	x-x,3000-2998[BULt];20-21,2988-2987[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UUGGAAGAGAGCGCGAAAUGGAAG&CUUCUAUUUU---UUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN111_c0_g1_3001_TPlot.pdf
TRINITY_DN111_c0_g1:3002	si_s70	TRINITY_DN111_c0_g1	2988	3011	3002	-25.80	-17.00	0.65891472868217	12	2-11,3010-3001;12-20,2997-2989	1-1,3011-3011[UP5];x-x,3000-2998[BULt];21-21,2988-2988[UP3]	.(((((((((...((((((((((.&.))))))))))---))))))))).	UGGAAGAGAGCGCGAAAUGGAAGA&ACUUCUAUUUU---UUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN111_c0_g1_3002_TPlot.pdf
TRINITY_DN111_c0_g1:3003	si_s69	TRINITY_DN111_c0_g1	2989	3012	3003	-23.40	-17.00	0.726495726495727	12.5	3-12,3010-3001;13-21,2997-2989	1-2,3012-3011[UP5];x-x,3000-2998[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	GGAAGAGAGCGCGAAAUGGAAGAA&AACUUCUAUUUU---UUUUCUUUC	3	0.999999999996046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN111_c0_g1_3003_TPlot.pdf
TRINITY_DN111_c0_g1:3010	si_s85	TRINITY_DN111_c0_g1	2999	3020	3010	-33.80	-23.90	0.707100591715976	6.5	1-4,3020-3017;5-14,3015-3006;17-21,3003-2999	x-x,3016-3016[BULt];15-16,3005-3004[SIL]	(((((..((((((((((.((((&))))-))))))))))..)))))	GCGAAAUGGAAGAAGGGCAAGG&CUUU-CCUUUCUUCUUCUUCGC	2	0.999926725936868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN111_c0_g1_3010_TPlot.pdf
TRINITY_DN111_c0_g1:3020	si_s75	TRINITY_DN111_c0_g1	3009	3029	3020	-24.00	-15.80	0.658333333333333	8.5	1-7,3029-3023;9-13,3021-3017;15-21,3015-3009	8-8,3022-3022[SIL];14-14,3016-3016[SIL]	(((((((.(((((.(((((((&))))))).))))).)))))))	AGAAGGGCAAGGGCGAGGAUA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN111_c0_g1_3020_TPlot.pdf
TRINITY_DN111_c0_g1:3021	si_s806	TRINITY_DN111_c0_g1	3008	3030	3021	-28.60	-19.08	0.667132867132867	11	1-11,3030-3020;14-21,3015-3008	12-13,3019-3016[AILt]	((((((((....(((((((((((&)))))))))))--..))))))))	AAGAAGGGCAAGGGCGAGGAUAA&UUAUCUUCGUU--ACCUUUUCUU	4	0.999999999985496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN111_c0_g1_3021_TPlot.pdf
TRINITY_DN111_c0_g1:3029	si_a327	TRINITY_DN111_c0_g1	3019	3038	3029	-28.40	-19.00	0.669014084507042	7	4-12,3035-3027;14-21,3026-3019	1-3,3038-3036[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GGGCGAGG-AUAAAAAAAAGA&UGAUUUUUUUAUUCCUUGUCC	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN111_c0_g1_3029_TPlot.pdf
TRINITY_DN111_c0_g1:3047	si_s79	TRINITY_DN111_c0_g1	3035	3056	3047	-26.20	-19.20	0.732824427480916	4	1-11,3056-3046;13-21,3043-3035	12-12,3045-3044[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AAGAAGAAAAAGAAAGAAAAAA&UUUUUUCUUUC-CUUUCUUCUU	2	0.999999999760901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN111_c0_g1_3047_TPlot.pdf
TRINITY_DN111_c0_g1:3048	si_s78	TRINITY_DN111_c0_g1	3036	3057	3048	-26.20	-19.20	0.732824427480916	3	1-12,3057-3046;14-21,3043-3036	13-13,3045-3044[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AGAAGAAAAAGAAAGAAAAAAA&UUUUUUUCUUUC-CUUUCUUCU	2	0.999999999180213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN111_c0_g1_3048_TPlot.pdf
TRINITY_DN111_c0_g1:4338	si_a148	TRINITY_DN111_c0_g1	4320	4347	4338	-30.30	-19.90	0.656765676567657	18	1-10,4347-4338;11-19,4330-4322	x-x,4337-4331[BULt];20-21,4321-4320[UP3]	..(((((((((.......((((((((((&))))))))))-------)))))))))..	GCGGCUUUAGAGGUCGCCACAACAACGA&UCGUUGUUGU-------UUUAAGGUCAA	3	0.99999994418289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN111_c0_g1_4338_TPlot.pdf
TRINITY_DN111_c0_g1:4340	si_a146	TRINITY_DN111_c0_g1	4322	4349	4340	-29.70	-19.50	0.656565656565657	18.5	3-12,4347-4338;13-21,4330-4322	1-2,4349-4348[UP5];x-x,4337-4331[BULt]	(((((((((.......((((((((((..&..))))))))))-------)))))))))	GGCUUUAGAGGUCGCCACAACAACGACA&AAUCGUUGUUGU-------UUUAAGGUC	3	0.999999899600981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN111_c0_g1_4340_TPlot.pdf
TRINITY_DN111_c0_g1:4407	si_s806	TRINITY_DN111_c0_g1	4396	4416	4407	-28.60	-19.20	0.671328671328671	10	1-8,4416-4409;10-18,4407-4399	9-9,4408-4408[SIL];19-21,4398-4396[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UCAAAGAGGUAGGGGAGGUGG&UUAUCUUCGUUACCUUUUCUU	3	0.999999999388781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN111_c0_g1_4407_TPlot.pdf
TRINITY_DN111_c0_g1:4408	si_s805	TRINITY_DN111_c0_g1	4397	4417	4408	-28.60	-19.20	0.671328671328671	10.5	2-9,4416-4409;11-19,4407-4399	1-1,4417-4417[UP5];10-10,4408-4408[SIL];20-21,4398-4397[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CAAAGAGGUAGGGGAGGUGGU&UUUAUCUUCGUUACCUUUUCU	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN111_c0_g1_4408_TPlot.pdf
TRINITY_DN111_c0_g1:4409	si_s804	TRINITY_DN111_c0_g1	4398	4418	4409	-27.90	-19.20	0.688172043010753	11.5	3-10,4416-4409;12-20,4407-4399	1-2,4418-4417[UP5];11-11,4408-4408[SIL];21-21,4398-4398[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	AAAGAGGUAGGGGAGGUGGUU&UUUUAUCUUCGUUACCUUUUC	4	0.999999092842712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN111_c0_g1_4409_TPlot.pdf
TRINITY_DN111_c0_g1:4410	si_s803	TRINITY_DN111_c0_g1	4399	4419	4410	-26.00	-19.20	0.738461538461538	12	4-11,4416-4409;13-21,4407-4399	1-3,4419-4417[UP5];12-12,4408-4408[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAGAGGUAGGGGAGGUGGUUA&AUUUUAUCUUCGUUACCUUUU	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN111_c0_g1_4410_TPlot.pdf
TRINITY_DN111_c0_g1:4411	si_s802	TRINITY_DN111_c0_g1	4400	4420	4411	-26.40	-18.30	0.693181818181818	13	5-12,4416-4409;14-21,4407-4400	1-4,4420-4417[UP5];13-13,4408-4408[SIL]	((((((((.((((((((....&....)))))))).))))))))	AGAGGUAGGGGAGGUGGUUAU&UAUUUUAUCUUCGUUACCUUU	3	0.999996002057448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN111_c0_g1_4411_TPlot.pdf
TRINITY_DN111_c0_g1:4450	si_s773	TRINITY_DN111_c0_g1	4439	4459	4450	-23.10	-15.60	0.675324675324675	8.5	2-6,4458-4454;8-18,4452-4442	1-1,4459-4459[UP5];7-7,4453-4453[SIL];19-21,4441-4439[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	AGGUAUGGCGAUAGAGAUUAU&UUAAUUACUAUUGCUAUAAAA	2	0.998528954620462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN111_c0_g1_4450_TPlot.pdf
TRINITY_DN111_c0_g1:4451	si_s772	TRINITY_DN111_c0_g1	4440	4460	4451	-23.20	-15.60	0.672413793103448	9	3-7,4458-4454;9-19,4452-4442	1-2,4460-4459[UP5];8-8,4453-4453[SIL];20-21,4441-4440[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	GGUAUGGCGAUAGAGAUUAUC&AUUAAUUACUAUUGCUAUAAA	3	0.999978543656523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN111_c0_g1_4451_TPlot.pdf
TRINITY_DN111_c0_g1:4452	si_s771	TRINITY_DN111_c0_g1	4441	4460	4452	-25.20	-16.40	0.650793650793651	7	1-3,4460-4458;5-8,4457-4454;10-20,4452-4442	4-4,x-x[BULq];9-9,4453-4453[SIL];21-21,4441-4441[UP3]	.(((((((((((.((((-(((&))).)))).))))))))))).	GUAUGGCGAUAGAGAUU-AUC&GAUUAAUUACUAUUGCUAUAA	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN111_c0_g1_4452_TPlot.pdf
TRINITY_DN111_c0_g1:4453	si_s770	TRINITY_DN111_c0_g1	4442	4461	4453	-26.60	-18.30	0.68796992481203	6	1-4,4461-4458;6-9,4457-4454;11-21,4452-4442	5-5,x-x[BULq];10-10,4453-4453[SIL]	(((((((((((.((((-((((&)))).)))).)))))))))))	UAUGGCGAUAGAGAUU-AUCG&CGAUUAAUUACUAUUGCUAUA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN111_c0_g1_4453_TPlot.pdf
TRINITY_DN111_c0_g1:4556	si_a786	TRINITY_DN111_c0_g1	4546	4564	4556	-26.60	-17.70	0.665413533834586	8	1-9,4564-4556;12-16,4555-4551;19-21,4548-4546	10-11,x-x[BULq];17-18,4550-4549[SIL]	(((..(((((--(((((((((&)))))))))..)))))..)))	GGAUUAUAGG--GAUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.99999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN111_c0_g1_4556_TPlot.pdf
TRINITY_DN111_c0_g1:4743	si_a498	TRINITY_DN111_c0_g1	4732	4757	4743	-33.50	-22.60	0.674626865671642	17.5	2-8,4756-4750;9-18,4744-4735	1-1,4757-4757[UP5];x-x,4749-4745[BULt];19-21,4734-4732[UP3]	...((((((((((.....(((((((.&.)))))))-----))))))))))...	GUCGGAAGGCGAGGAUAGGGACGACU&UGUCGUUU-----UUCGUCUUCCUUG	3	0.999999999220712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN111_c0_g1_4743_TPlot.pdf
TRINITY_DN111_c0_g1:4744	si_a497	TRINITY_DN111_c0_g1	4733	4758	4744	-32.00	-22.60	0.70625	18.5	3-9,4756-4750;10-19,4744-4735	1-2,4758-4757[UP5];x-x,4749-4745[BULt];20-21,4734-4733[UP3]	..((((((((((.....(((((((..&..)))))))-----))))))))))..	UCGGAAGGCGAGGAUAGGGACGACUA&AUGUCGUUU-----UUCGUCUUCCUU	3	0.999999450154812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN111_c0_g1_4744_TPlot.pdf
TRINITY_DN111_c0_g1:4750	si_a496	TRINITY_DN111_c0_g1	4734	4759	4750	-32.40	-22.60	0.697530864197531	19.5	4-10,4756-4750;11-20,4744-4735	1-3,4759-4757[UP5];x-x,4749-4745[BULt];21-21,4734-4734[UP3]	.((((((((((.....(((((((...&...)))))))-----)))))))))).	CGGAAGGCGAGGAUAGGGACGACUAC&UAUGUCGUUU-----UUCGUCUUCCU	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN111_c0_g1_4750_TPlot.pdf
TRINITY_DN111_c0_g1:4751	si_a495	TRINITY_DN111_c0_g1	4735	4760	4751	-31.90	-22.30	0.699059561128527	20.5	5-11,4756-4750;12-21,4744-4735	1-4,4760-4757[UP5];x-x,4749-4745[BULt]	((((((((((.....(((((((....&....)))))))-----))))))))))	GGAAGGCGAGGAUAGGGACGACUACA&AUAUGUCGUUU-----UUCGUCUUCC	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN111_c0_g1_4751_TPlot.pdf
TRINITY_DN111_c0_g1:4802	si_a627	TRINITY_DN111_c0_g1	4791	4813	4802	-29.50	-20.20	0.684745762711864	12.5	1-3,4813-4811;5-8,4809-4806;10-21,4802-4791	4-4,4810-4810[SIL];9-9,4805-4803[AILt]	((((((((((((...((((.(((&))).))))--.))))))))))))	GAGAGAUCGGCGGAAAAUGGGCC&GGCGUAUU--AUGUCGAUUUUUU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN111_c0_g1_4802_TPlot.pdf
TRINITY_DN111_c0_g1:4822	si_s85	TRINITY_DN111_c0_g1	4812	4831	4822	-33.80	-22.60	0.668639053254438	7	1-15,4831-4817;18-20,4815-4813	16-17,4816-4816[AILq];21-21,4812-4812[UP3]	.(((.-(((((((((((((((&)))))))))))))))..))).	CCGAU-AAGGAGGAGGGAGAG&CUUUCCUUUCUUCUUCUUCGC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN111_c0_g1_4822_TPlot.pdf
TRINITY_DN111_c0_g1:4823	si_s84	TRINITY_DN111_c0_g1	4813	4832	4823	-32.30	-24.20	0.74922600619195	5.5	1-16,4832-4817;19-21,4815-4813	17-18,4816-4816[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	CGAU-AAGGAGGAGGGAGAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN111_c0_g1_4823_TPlot.pdf
TRINITY_DN111_c0_g1:4824	si_s90	TRINITY_DN111_c0_g1	4812	4833	4824	-35.30	-25.12	0.711614730878187	8	1-14,4833-4820;18-21,4815-4812	15-17,4819-4816[AILt]	((((....((((((((((((((&))))))))))))))-...))))	CCGAUAAGGAGGAGGGAGAGAG&CUUUCUUCUUCUUC-GCUUCGG	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN111_c0_g1_4824_TPlot.pdf
TRINITY_DN111_c0_g1:4827	si_s80	TRINITY_DN111_c0_g1	4816	4836	4827	-28.20	-22.20	0.787234042553192	10	4-20,4833-4817	1-3,4836-4834[UP5];21-21,4816-4816[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAGGAGGAGGGAGAGAGCCA&UUUUUCUUUCCUUUCUUCUUC	3	0.999967834400078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN111_c0_g1_4827_TPlot.pdf
TRINITY_DN111_c0_g1:4828	si_s79	TRINITY_DN111_c0_g1	4817	4837	4828	-26.20	-22.20	0.847328244274809	10.5	5-21,4833-4817	1-4,4837-4834[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGGAGGAGGGAGAGAGCCAG&UUUUUUCUUUCCUUUCUUCUU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN111_c0_g1_4828_TPlot.pdf
TRINITY_DN111_c0_g1:4829	si_s78	TRINITY_DN111_c0_g1	4818	4838	4829	-26.20	-21.50	0.820610687022901	12.5	6-21,4833-4818	1-5,4838-4834[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGGAGGAGGGAGAGAGCCAGG&UUUUUUUCUUUCCUUUCUUCU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN111_c0_g1_4829_TPlot.pdf
TRINITY_DN111_c0_g1:4830	si_a745	TRINITY_DN111_c0_g1	4819	4839	4830	-42.00	-27.62	0.657619047619048	12	1-7,4839-4833;14-21,4826-4819	8-13,4832-4827[SIL]	((((((((......(((((((&)))))))......))))))))	GGAGGAGGGAGAGAGCCAGGG&CCCUGGCCAUGAACCUCCUUU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN111_c0_g1_4830_TPlot.pdf
TRINITY_DN111_c0_g1:4831	si_s83	TRINITY_DN111_c0_g1	4820	4843	4831	-30.90	-24.00	0.776699029126214	10.5	1-7,4843-4837;8-21,4833-4820	x-x,4836-4834[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GAGGAGGGAGAGAGCCAGGGAGAA&UUCUUUC---CUUUCUUCUUCUUC	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN111_c0_g1_4831_TPlot.pdf
TRINITY_DN111_c0_g1:4832	si_s71	TRINITY_DN111_c0_g1	4821	4841	4832	-25.70	-18.28	0.711284046692607	11.5	1-5,4841-4837;9-21,4833-4821	6-8,4836-4834[SIL]	(((((((((((((...(((((&)))))...)))))))))))))	AGGAGGGAGAGAGCCAGGGAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN111_c0_g1_4832_TPlot.pdf
TRINITY_DN111_c0_g1:4833	si_s70	TRINITY_DN111_c0_g1	4822	4842	4833	-25.80	-16.98	0.658139534883721	12.5	2-6,4841-4837;10-21,4833-4822	1-1,4842-4842[UP5];7-9,4836-4834[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	GGAGGGAGAGAGCCAGGGAGA&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN111_c0_g1_4833_TPlot.pdf
TRINITY_DN111_c0_g1:4888	si_s81	TRINITY_DN111_c0_g1	4876	4897	4888	-28.90	-20.60	0.71280276816609	7	1-5,4897-4893;8-13,4890-4885;14-20,4883-4877	6-7,4892-4891[SIL];x-x,4884-4884[BULt];21-21,4876-4876[UP3]	.(((((((.((((((..(((((&)))))..))))))-))))))).	CGGAGAAGUGAAGGAUUGAAAA&UUUUCUUUCCUUU-CUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN111_c0_g1_4888_TPlot.pdf
TRINITY_DN111_c0_g1:4891	si_s78	TRINITY_DN111_c0_g1	4879	4900	4891	-26.20	-18.30	0.698473282442748	7.5	2-8,4899-4893;11-16,4890-4885;17-21,4883-4879	1-1,4900-4900[UP5];9-10,4892-4891[SIL];x-x,4884-4884[BULt]	(((((.((((((..(((((((.&.)))))))..))))))-)))))	AGAAGUGAAGGAUUGAAAAAGG&UUUUUUUCUUUCCUUU-CUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN111_c0_g1_4891_TPlot.pdf
TRINITY_DN11204_c0_g1:211	si_s776	TRINITY_DN11204_c0_g1	200	220	211	-25.10	-16.40	0.653386454183267	10.5	5-16,216-205;18-19,203-202	1-4,220-217[UP5];17-17,204-204[SIL];20-21,201-200[UP3]	..((.((((((((((((....&....)))))))))))).))..	GAGUGUUGUAGCAAUAGCAGG&AUUACUAUUGCUAUAAAACAA	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN11204_c0_g1_211_TPlot.pdf
TRINITY_DN11204_c0_g1:212	si_s775	TRINITY_DN11204_c0_g1	201	221	212	-25.00	-16.40	0.656	11.5	6-17,216-205;19-20,203-202	1-5,221-217[UP5];18-18,204-204[SIL];21-21,201-201[UP3]	.((.((((((((((((.....&.....)))))))))))).)).	AGUGUUGUAGCAAUAGCAGGU&AAUUACUAUUGCUAUAAAACA	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN11204_c0_g1_212_TPlot.pdf
TRINITY_DN11204_c0_g1:513	si_a793	TRINITY_DN11204_c0_g1	502	521	513	-28.50	-19.00	0.666666666666667	6.5	1-6,521-516;8-10,515-513;12-21,511-502	7-7,x-x[BULq];11-11,512-512[SIL]	((((((((((.(((-((((((&)))))).))).))))))))))	UUGGAUUGGAUAAU-GAAGGA&UUUUUCUAUUUUCCAAUCCGA	2	0.99813651178012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN11204_c0_g1_513_TPlot.pdf
TRINITY_DN11207_c0_g1:1478	si_a20	TRINITY_DN11207_c0_g1	1467	1487	1478	-26.70	-17.40	0.651685393258427	9	1-5,1487-1483;7-18,1481-1470	6-6,1482-1482[SIL];19-21,1469-1467[UP3]	...((((((((((((.(((((&))))).))))))))))))...	UGAAACUGAGGAUGAUUAGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999999997578755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN11207_c0_g1_1478_TPlot.pdf
TRINITY_DN11207_c0_g1:2015	si_a74	TRINITY_DN11207_c0_g1	2004	2024	2015	-22.20	-14.50	0.653153153153153	9	4-9,2021-2016;11-21,2014-2004	1-3,2024-2022[UP5];10-10,2015-2015[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UGAUAGUGAAGUACAAUUCCA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999999997331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN11207_c0_g1_2015_TPlot.pdf
TRINITY_DN11207_c0_g1:2270	si_a180	TRINITY_DN11207_c0_g1	2259	2281	2270	-32.10	-23.10	0.719626168224299	10	1-5,2281-2277;6-20,2274-2260	x-x,2276-2275[BULt];21-21,2259-2259[UP3]	.(((((((((((((((..(((((&)))))--))))))))))))))).	UGGGGAAGAUGUUGUUGUUGGAU&GUCUA--GAUAAUAUCUUUCCCU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN11207_c0_g1_2270_TPlot.pdf
TRINITY_DN11207_c0_g1:2383	si_a348	TRINITY_DN11207_c0_g1	2372	2392	2383	-21.10	-16.10	0.76303317535545	5	2-8,2391-2385;10-20,2383-2373	1-1,2392-2392[UP5];9-9,2384-2384[SIL];21-21,2372-2372[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	CAGAUGGAAUUAUUAUUUUCC&CGAAAAUAUUAAUUCUAUUUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN11207_c0_g1_2383_TPlot.pdf
TRINITY_DN11207_c0_g1:3095	si_s284	TRINITY_DN11207_c0_g1	3082	3104	3095	-34.70	-24.10	0.694524495677233	8	2-11,3103-3094;12-16,3092-3088;17-21,3086-3082	1-1,3104-3104[UP5];x-x,3093-3093[BULt];x-x,3087-3087[BULt]	(((((.(((((.((((((((((.&.))))))))))-)))))-)))))	CCAGUACGAUUGGGGCGUGUUGA&AUAAUACGCCU-AGUCG-AUUGG	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s284_TRINITY_DN11207_c0_g1_3095_TPlot.pdf
TRINITY_DN11207_c0_g1:3310	si_a66	TRINITY_DN11207_c0_g1	3302	3319	3310	-26.70	-18.10	0.677902621722847	8.5	1-11,3319-3309;15-20,3308-3303	12-14,x-x[BULq];21-21,3302-3302[UP3]	.((((((---(((((((((((&)))))))))))...)))))).	CGAGACG---UGAAGGGAGCG&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN11207_c0_g1_3310_TPlot.pdf
TRINITY_DN11217_c0_g1:2279	si_a154	TRINITY_DN11217_c0_g1	2268	2287	2279	-27.00	-17.60	0.651851851851852	9	1-8,2287-2280;10-14,2279-2275;16-20,2273-2269	9-9,x-x[BULq];15-15,2274-2274[SIL];21-21,2268-2268[UP3]	.(((((.(((((-((((((((&)))))))).))))).))))).	CGUGGAGUGACC-UGGGACGA&UUGUUUUAAGGUCAAUCUAUU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN11217_c0_g1_2279_TPlot.pdf
TRINITY_DN11217_c0_g1:2453	si_s888	TRINITY_DN11217_c0_g1	2442	2462	2453	-26.80	-18.60	0.694029850746269	18	9-20,2454-2443	1-8,2462-2455[UP5];21-21,2442-2442[UP3]	.((((((((((((........&........)))))))))))).	CGGAGAGAGCCUGACGAAGUG&AAAAUAAAUAGGCUUUCUCUU	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN11217_c0_g1_2453_TPlot.pdf
TRINITY_DN11217_c0_g1:2577	si_s97	TRINITY_DN11217_c0_g1	2564	2586	2577	-36.30	-24.90	0.685950413223141	9	1-11,2586-2576;12-12,2574-2574;13-14,2572-2571;17-20,2568-2565	x-x,2575-2575[BULt];x-x,2573-2573[BULt];15-16,2570-2569[SIL];21-21,2564-2564[UP3]	.((((..((.(.(((((((((((&)))))))))))-)-))..)))).	CUCCAUGCCAGCGAGCGAAGAGG&CUUCUUCGCUU-C-GGAUUGGAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN11217_c0_g1_2577_TPlot.pdf
TRINITY_DN11217_c0_g1:2579	si_s95	TRINITY_DN11217_c0_g1	2566	2588	2579	-36.30	-24.50	0.674931129476584	6	1-13,2588-2576;14-14,2574-2574;15-16,2572-2571;19-21,2568-2566	x-x,2575-2575[BULt];x-x,2573-2573[BULt];17-18,2570-2569[SIL]	(((..((.(.(((((((((((((&)))))))))))))-)-))..)))	CCAUGCCAGCGAGCGAAGAGGAG&UUCUUCUUCGCUU-C-GGAUUGG	2	0.992394551209544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN11217_c0_g1_2579_TPlot.pdf
TRINITY_DN11217_c0_g1:778	si_a452	TRINITY_DN11217_c0_g1	767	787	778	-23.00	-15.00	0.652173913043478	11.5	2-15,786-773	1-1,787-787[UP5];16-21,772-767[UP3]	......((((((((((((((.&.))))))))))))))......	CUCCCGGUAGCGACGAUUGUG&GAUAAUUGUUGUUAUAUAUAA	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN11217_c0_g1_778_TPlot.pdf
TRINITY_DN11219_c0_g1:1652	si_s530	TRINITY_DN11219_c0_g1	1641	1662	1652	-29.50	-19.90	0.674576271186441	8.5	1-5,1662-1658;6-8,1656-1654;11-20,1651-1642	x-x,1657-1657[BULt];9-10,1653-1652[SIL];21-21,1641-1641[UP3]	.((((((((((..(((.(((((&)))))-)))..)))))))))).	UUUGGAUCAAAUUUGGCUUUCG&CGAAA-UCAUUUUUGAUCCGAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN11219_c0_g1_1652_TPlot.pdf
TRINITY_DN11219_c0_g1:900	si_s78	TRINITY_DN11219_c0_g1	889	909	900	-26.20	-17.40	0.66412213740458	8.5	1-16,909-894	17-21,893-889[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUCAUGAAGGAGAGGAAGAAA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN11219_c0_g1_900_TPlot.pdf
TRINITY_DN11219_c0_g1:902	si_s76	TRINITY_DN11219_c0_g1	891	911	902	-23.60	-17.60	0.745762711864407	9.5	3-18,909-894	1-2,911-910[UP5];19-21,893-891[UP3]	...((((((((((((((((..&..))))))))))))))))...	CAUGAAGGAGAGGAAGAAAUG&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999965695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11219_c0_g1_902_TPlot.pdf
TRINITY_DN11219_c0_g1:903	si_s75	TRINITY_DN11219_c0_g1	892	912	903	-24.00	-17.60	0.733333333333333	10	4-19,909-894	1-3,912-910[UP5];20-21,893-892[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUGAAGGAGAGGAAGAAAUGU&UAUUUUUUUUCUUUCCUUUCU	2	0.999999998667989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11219_c0_g1_903_TPlot.pdf
TRINITY_DN11219_c0_g1:905	si_s73	TRINITY_DN11219_c0_g1	894	914	905	-24.00	-17.60	0.733333333333333	12	6-21,909-894	1-5,914-910[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGGAGAGGAAGAAAUGUUA&UCUAUUUUUUUUCUUUCCUUU	2	0.999999890860581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11219_c0_g1_905_TPlot.pdf
TRINITY_DN11219_c0_g1:906	si_s72	TRINITY_DN11219_c0_g1	895	915	906	-24.10	-16.50	0.684647302904564	13	7-21,909-895	1-6,915-910[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGAGAGGAAGAAAUGUUAG&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11219_c0_g1_906_TPlot.pdf
TRINITY_DN11221_c0_g1:434	si_s379	TRINITY_DN11221_c0_g1	423	445	434	-42.50	-28.00	0.658823529411765	11.5	1-6,445-440;8-8,438-438;9-18,435-426	7-7,439-439[SIL];x-x,437-436[BULt];19-21,425-423[UP3]	...((((((((((..(.((((((&)))))).)--))))))))))...	AUAUGAGGCGGAUAGAGGCGGGC&GCUCGCGU--GUCCGCCUUACAU	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN11221_c0_g1_434_TPlot.pdf
TRINITY_DN11221_c0_g1:439	si_s376	TRINITY_DN11221_c0_g1	426	448	439	-42.50	-28.40	0.668235294117647	13.5	4-9,445-440;11-11,438-438;12-21,435-426	1-3,448-446[UP5];10-10,439-439[SIL];x-x,437-436[BULt]	((((((((((..(.((((((...&...)))))).)--))))))))))	UGAGGCGGAUAGAGGCGGGCUGG&AUCGCUCGCGU--GUCCGCCUUA	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN11221_c0_g1_439_TPlot.pdf
TRINITY_DN11221_c1_g1:7126	si_a149	TRINITY_DN11221_c1_g1	7115	7135	7126	-29.40	-19.48	0.662585034013605	9	1-12,7135-7124;16-18,7120-7118	13-15,7123-7121[SIL];19-21,7117-7115[UP3]	...(((...((((((((((((&))))))))))))...)))...	AGAGACGGGAGAGCAGCAACG&CGUUGUUGUUUUAAGGUCAAU	4	0.999999923809806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN11221_c1_g1_7126_TPlot.pdf
TRINITY_DN11223_c0_g2:325	si_a473	TRINITY_DN11223_c0_g2	314	334	325	-23.00	-16.60	0.721739130434783	8	3-10,332-325;12-20,323-315	1-2,334-333[UP5];11-11,324-324[SIL];21-21,314-314[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	GUAUGUGACAUUGAUUACAAG&UAUGUAAUUAUUGUUAUAUAG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN11223_c0_g2_325_TPlot.pdf
TRINITY_DN1123_c0_g1:515	si_a837	TRINITY_DN1123_c0_g1	504	524	515	-25.80	-18.20	0.705426356589147	12	5-10,520-515;13-21,512-504	1-4,524-521[UP5];11-12,514-513[SIL]	(((((((((..((((((....&....))))))..)))))))))	GUUGGCAGCGACUAUUUCGAU&AAAAAAAUAGAAGUUGCUAAC	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN1123_c0_g1_515_TPlot.pdf
TRINITY_DN11246_c1_g1:231	si_a500	TRINITY_DN11246_c1_g1	220	237	231	-34.40	-22.90	0.665697674418605	9	1-6,237-232;10-21,231-220	7-9,x-x[BULq]	((((((((((((---((((((&))))))...))))))))))))	UCCGAGGAAGAU---AAGCGG&UCGUUUUUCGUCUUCCUUGGA	4	0.999999993467485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN11246_c1_g1_231_TPlot.pdf
TRINITY_DN11249_c0_g1:2687	si_a461	TRINITY_DN11249_c0_g1	2676	2700	2687	-21.50	-14.20	0.66046511627907	12	2-8,2699-2693;9-21,2688-2676	1-1,2700-2700[UP5];x-x,2692-2689[BULt]	(((((((((((((....(((((((.&.)))))))----)))))))))))))	GAUUAUAUAUUAUUUUAAUGUAGCU&UGUUAUAU----AUAAUAUGUAAUU	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN11249_c0_g1_2687_TPlot.pdf
TRINITY_DN1124_c0_g1:181	si_a410	TRINITY_DN1124_c0_g1	171	190	181	-17.80	-12.20	0.685393258426966	5	1-10,190-181;12-19,180-173	11-11,x-x[BULq];20-21,172-171[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	UAUAUUUAAG-AUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999500795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1124_c0_g1_181_TPlot.pdf
TRINITY_DN1124_c0_g2:1113	si_a431	TRINITY_DN1124_c0_g2	1102	1122	1113	-34.50	-22.50	0.652173913043478	7	3-12,1120-1111;14-16,1110-1108;19-21,1104-1102	1-2,1122-1121[UP5];13-13,x-x[BULq];17-18,1107-1105[AILt]	(((...(((-((((((((((..&..)))))))))).)))-..)))	UCAGCUUCC-ACGGAUCCUACC&UAUAGGAUCCGUUGGA-UAUGA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN1124_c0_g2_1113_TPlot.pdf
TRINITY_DN1124_c0_g2:1115	si_a429	TRINITY_DN1124_c0_g2	1105	1124	1115	-32.00	-20.80	0.65	11	5-14,1120-1111;16-18,1110-1108	1-4,1124-1121[UP5];15-15,x-x[BULq];19-21,1107-1105[UP3]	...(((-((((((((((....&....)))))))))).)))...	GCUUCC-ACGGAUCCUACCAG&AAUAUAGGAUCCGUUGGAUAU	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN1124_c0_g2_1115_TPlot.pdf
TRINITY_DN1124_c0_g2:1116	si_a428	TRINITY_DN1124_c0_g2	1106	1125	1116	-31.80	-20.80	0.654088050314465	12	6-15,1120-1111;17-19,1110-1108	1-5,1125-1121[UP5];16-16,x-x[BULq];20-21,1107-1106[UP3]	..(((-((((((((((.....&.....)))))))))).)))..	CUUCC-ACGGAUCCUACCAGC&AAAUAUAGGAUCCGUUGGAUA	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN1124_c0_g2_1116_TPlot.pdf
TRINITY_DN1124_c0_g2:1117	si_a427	TRINITY_DN1124_c0_g2	1107	1126	1117	-31.80	-20.80	0.654088050314465	13	7-16,1120-1111;18-20,1110-1108	1-6,1126-1121[UP5];17-17,x-x[BULq];21-21,1107-1107[UP3]	.(((-((((((((((......&......)))))))))).))).	UUCC-ACGGAUCCUACCAGCU&UAAAUAUAGGAUCCGUUGGAU	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN1124_c0_g2_1117_TPlot.pdf
TRINITY_DN1124_c0_g2:1118	si_a426	TRINITY_DN1124_c0_g2	1108	1127	1118	-31.80	-20.70	0.650943396226415	14	8-17,1120-1111;19-21,1110-1108	1-7,1127-1121[UP5];18-18,x-x[BULq]	(((-((((((((((.......&.......)))))))))).)))	UCC-ACGGAUCCUACCAGCUU&AUAAAUAUAGGAUCCGUUGGA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN1124_c0_g2_1118_TPlot.pdf
TRINITY_DN1124_c0_g2:1380	si_a127	TRINITY_DN1124_c0_g2	1368	1390	1380	-23.10	-15.20	0.658008658008658	8	1-8,1390-1383;9-15,1381-1375;16-19,1373-1370	x-x,1382-1382[BULt];x-x,1374-1374[BULt];20-21,1369-1368[UP3]	..((((.(((((((.((((((((&))))))))-)))))))-))))..	ACGAUUAGCUGUUGACUAUGAAA&UUUUAUAG-CAAUAGU-AAUUAA	3	0.999951779956384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN1124_c0_g2_1380_TPlot.pdf
TRINITY_DN1124_c0_g2:1606	si_a350	TRINITY_DN1124_c0_g2	1595	1615	1606	-20.30	-13.30	0.655172413793103	7	2-8,1614-1608;11-21,1605-1595	1-1,1615-1615[UP5];9-10,1607-1606[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	UUAAAAUGGGAGAAAUAUUUA&AAAAUAUUAAUUCUAUUUUGA	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1124_c0_g2_1606_TPlot.pdf
TRINITY_DN1124_c0_g2:623	si_s42	TRINITY_DN1124_c0_g2	612	632	623	-24.90	-16.50	0.662650602409639	7	1-14,632-619	15-21,618-612[UP3]	.......((((((((((((((&)))))))))))))).......	GCUUUUACCAAUUAUUAAAGA&UCUUUAAUAAUUGGAUUUCAA	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN1124_c0_g2_623_TPlot.pdf
TRINITY_DN1124_c0_g2:624	si_s41	TRINITY_DN1124_c0_g2	613	633	624	-25.00	-16.50	0.66	7	2-15,632-619	1-1,633-633[UP5];16-21,618-613[UP3]	......((((((((((((((.&.))))))))))))))......	CUUUUACCAAUUAUUAAAGAA&AUCUUUAAUAAUUGGAUUUCA	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN1124_c0_g2_624_TPlot.pdf
TRINITY_DN1124_c0_g2:625	si_s40	TRINITY_DN1124_c0_g2	614	634	625	-24.30	-16.50	0.679012345679012	8	3-16,632-619	1-2,634-633[UP5];17-21,618-614[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUUACCAAUUAUUAAAGAAA&AAUCUUUAAUAAUUGGAUUUC	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN1124_c0_g2_625_TPlot.pdf
TRINITY_DN1124_c0_g2:626	si_s39	TRINITY_DN1124_c0_g2	615	635	626	-22.30	-16.50	0.739910313901345	9	4-17,632-619	1-3,635-633[UP5];18-21,618-615[UP3]	....((((((((((((((...&...))))))))))))))....	UUUACCAAUUAUUAAAGAAAG&AAAUCUUUAAUAAUUGGAUUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1124_c0_g2_626_TPlot.pdf
TRINITY_DN1124_c0_g2:627	si_s38	TRINITY_DN1124_c0_g2	616	636	627	-22.70	-16.50	0.726872246696035	10	5-18,632-619	1-4,636-633[UP5];19-21,618-616[UP3]	...((((((((((((((....&....))))))))))))))...	UUACCAAUUAUUAAAGAAAGC&UAAAUCUUUAAUAAUUGGAUU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN1124_c0_g2_627_TPlot.pdf
TRINITY_DN1124_c0_g2:628	si_s37	TRINITY_DN1124_c0_g2	617	637	628	-24.40	-16.50	0.676229508196721	11	6-19,632-619	1-5,637-633[UP5];20-21,618-617[UP3]	..((((((((((((((.....&.....))))))))))))))..	UACCAAUUAUUAAAGAAAGCU&CUAAAUCUUUAAUAAUUGGAU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN1124_c0_g2_628_TPlot.pdf
TRINITY_DN1124_c0_g2:629	si_s36	TRINITY_DN1124_c0_g2	618	638	629	-25.00	-16.50	0.66	12	7-20,632-619	1-6,638-633[UP5];21-21,618-618[UP3]	.((((((((((((((......&......)))))))))))))).	ACCAAUUAUUAAAGAAAGCUU&ACUAAAUCUUUAAUAAUUGGA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN1124_c0_g2_629_TPlot.pdf
TRINITY_DN1124_c0_g2:630	si_s35	TRINITY_DN1124_c0_g2	619	639	630	-24.00	-16.50	0.6875	13	8-21,632-619	1-7,639-633[UP5]	((((((((((((((.......&.......))))))))))))))	CCAAUUAUUAAAGAAAGCUUA&AACUAAAUCUUUAAUAAUUGG	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN1124_c0_g2_630_TPlot.pdf
TRINITY_DN1124_c0_g2:682	si_s82	TRINITY_DN1124_c0_g2	671	691	682	-28.90	-19.06	0.659515570934256	5	1-14,691-678;19-21,673-671	15-18,677-674[SIL]	(((....((((((((((((((&))))))))))))))....)))	AAGUAAUAGAAAGGGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1124_c0_g2_682_TPlot.pdf
TRINITY_DN1124_c0_g2:683	si_s81	TRINITY_DN1124_c0_g2	672	692	683	-28.90	-19.16	0.662975778546713	5	1-15,692-678;20-21,673-672	16-19,677-674[SIL]	((....(((((((((((((((&)))))))))))))))....))	AGUAAUAGAAAGGGAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1124_c0_g2_683_TPlot.pdf
TRINITY_DN1124_c0_g2:685	si_s79	TRINITY_DN1124_c0_g2	674	694	685	-26.20	-19.70	0.751908396946565	6	2-17,693-678	1-1,694-694[UP5];18-21,677-674[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAAUAGAAAGGGAAGAAAAAU&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999993827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1124_c0_g2_685_TPlot.pdf
TRINITY_DN1124_c0_g2:686	si_s78	TRINITY_DN1124_c0_g2	675	695	686	-26.20	-19.70	0.751908396946565	7	3-18,693-678	1-2,695-694[UP5];19-21,677-675[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAUAGAAAGGGAAGAAAAAUA&UUUUUUUCUUUCCUUUCUUCU	2	0.999999725859389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1124_c0_g2_686_TPlot.pdf
TRINITY_DN1124_c0_g2:687	si_s77	TRINITY_DN1124_c0_g2	676	696	687	-25.50	-19.70	0.772549019607843	8	4-19,693-678	1-3,696-694[UP5];20-21,677-676[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUAGAAAGGGAAGAAAAAUAU&UUUUUUUUCUUUCCUUUCUUC	3	0.999999995464925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1124_c0_g2_687_TPlot.pdf
TRINITY_DN1124_c0_g2:688	si_s76	TRINITY_DN1124_c0_g2	677	697	688	-23.60	-19.70	0.834745762711864	8.5	5-20,693-678	1-4,697-694[UP5];21-21,677-677[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAGAAAGGGAAGAAAAAUAUG&AUUUUUUUUCUUUCCUUUCUU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1124_c0_g2_688_TPlot.pdf
TRINITY_DN1124_c0_g2:689	si_s75	TRINITY_DN1124_c0_g2	678	698	689	-24.00	-19.70	0.820833333333333	9.5	6-21,693-678	1-5,698-694[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAAGGGAAGAAAAAUAUGC&UAUUUUUUUUCUUUCCUUUCU	2	0.97326627254944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1124_c0_g2_689_TPlot.pdf
TRINITY_DN1124_c0_g2:690	si_s74	TRINITY_DN1124_c0_g2	679	699	690	-25.00	-18.60	0.744	11.5	7-21,693-679	1-6,699-694[UP5]	(((((((((((((((......&......)))))))))))))))	GAAAGGGAAGAAAAAUAUGCU&CUAUUUUUUUUCUUUCCUUUC	2	0.999851046052001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1124_c0_g2_690_TPlot.pdf
TRINITY_DN1124_c0_g2:747	si_s890	TRINITY_DN1124_c0_g2	736	756	747	-29.50	-19.40	0.657627118644068	9.5	2-6,755-751;8-8,749-749;10-20,747-737	1-1,756-756[UP5];7-7,750-750[SIL];9-9,748-748[SIL];21-21,736-736[UP3]	.(((((((((((.(.(((((.&.))))).).))))))))))).	AGAGGAGAAGGUGUUUUUGUA&AAUAAAUAGGCUUUCUCUUCA	3	0.999994244422608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN1124_c0_g2_747_TPlot.pdf
TRINITY_DN1124_c0_g2:748	si_s889	TRINITY_DN1124_c0_g2	737	757	748	-28.80	-18.90	0.65625	10	3-7,755-751;9-9,749-749;11-21,747-737	1-2,757-756[UP5];8-8,750-750[SIL];10-10,748-748[SIL]	(((((((((((.(.(((((..&..))))).).)))))))))))	GAGGAGAAGGUGUUUUUGUAU&AAAUAAAUAGGCUUUCUCUUC	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN1124_c0_g2_748_TPlot.pdf
TRINITY_DN1124_c0_g2:933	si_a73	TRINITY_DN1124_c0_g2	921	942	933	-21.90	-14.30	0.65296803652968	5.5	1-7,942-936;9-13,934-930;14-21,928-921	8-8,935-935[SIL];x-x,929-929[BULt]	((((((((.(((((.(((((((&))))))).)))))-))))))))	GGUAGUGACAAAACUAUUUGGA&UUCAAAUUGUUUU-UCAUUAUU	2	0.999999994891665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1124_c0_g2_933_TPlot.pdf
TRINITY_DN11250_c0_g1:799	si_s610	TRINITY_DN11250_c0_g1	787	809	799	-27.20	-17.80	0.654411764705882	9.5	3-8,807-802;9-11,800-798;12-21,796-787	1-2,809-808[UP5];x-x,801-801[BULt];x-x,797-797[BULt]	((((((((((.(((.((((((..&..))))))-)))-))))))))))	UGCUUGGAUUCUAACGAGAGAAC&AAUCUUUU-UUA-AAUCCAAGCG	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN11250_c0_g1_799_TPlot.pdf
TRINITY_DN11253_c0_g1:1025	si_s312	TRINITY_DN11253_c0_g1	1014	1033	1025	-29.00	-19.50	0.672413793103448	12	5-9,1029-1025;11-20,1024-1015	1-4,1033-1030[UP5];10-10,x-x[BULq];21-21,1014-1014[UP3]	.((((((((((-(((((....&....))))).)))))))))).	AAGCAAGGAGG-CGGAAAAGA&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999266631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN11253_c0_g1_1025_TPlot.pdf
TRINITY_DN11253_c0_g1:1026	si_s76	TRINITY_DN11253_c0_g1	1014	1035	1026	-23.60	-15.60	0.661016949152542	7	1-10,1035-1026;11-17,1024-1018;19-21,1016-1014	x-x,1025-1025[BULt];18-18,1017-1017[SIL]	(((.(((((((.((((((((((&))))))))))-))))))).)))	AAGCAAGGAGGCGGAAAAGAAU&AUUUUUUUUC-UUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11253_c0_g1_1026_TPlot.pdf
TRINITY_DN11253_c0_g1:1027	si_s75	TRINITY_DN11253_c0_g1	1015	1036	1027	-24.00	-15.60	0.65	7	1-11,1036-1026;12-18,1024-1018;20-21,1016-1015	x-x,1025-1025[BULt];19-19,1017-1017[SIL]	((.(((((((.(((((((((((&)))))))))))-))))))).))	AGCAAGGAGGCGGAAAAGAAUG&UAUUUUUUUUC-UUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11253_c0_g1_1027_TPlot.pdf
TRINITY_DN11253_c0_g1:1028	si_s74	TRINITY_DN11253_c0_g1	1016	1037	1028	-25.00	-17.70	0.708	8	1-12,1037-1026;13-19,1024-1018	x-x,1025-1025[BULt];20-21,1017-1016[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	GCAAGGAGGCGGAAAAGAAUGG&CUAUUUUUUUUC-UUUCCUUUC	4	0.999999999999877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11253_c0_g1_1028_TPlot.pdf
TRINITY_DN11253_c0_g1:1029	si_s73	TRINITY_DN11253_c0_g1	1017	1038	1029	-24.00	-19.30	0.804166666666667	6	1-13,1038-1026;14-20,1024-1018	x-x,1025-1025[BULt];21-21,1017-1017[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	CAAGGAGGCGGAAAAGAAUGGA&UCUAUUUUUUUUC-UUUCCUUU	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11253_c0_g1_1029_TPlot.pdf
TRINITY_DN11253_c0_g1:1032	si_s70	TRINITY_DN11253_c0_g1	1020	1041	1032	-25.80	-18.00	0.697674418604651	8.5	3-16,1039-1026;17-21,1024-1020	1-2,1041-1040[UP5];x-x,1025-1025[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GGAGGCGGAAAAGAAUGGAGAG&ACUUCUAUUUUUUUUC-UUUCC	3	0.99999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN11253_c0_g1_1032_TPlot.pdf
TRINITY_DN11253_c0_g1:1040	si_a323	TRINITY_DN11253_c0_g1	1029	1049	1040	-26.80	-17.80	0.664179104477612	9	1-3,1049-1047;5-18,1045-1032	4-4,1046-1046[SIL];19-21,1031-1029[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AAAGAAUGGAGAGGUCAAGGA&UCCAUGAUUUUUUUAUUCCUU	2	0.999958148401029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN11253_c0_g1_1040_TPlot.pdf
TRINITY_DN11253_c0_g1:1041	si_a322	TRINITY_DN11253_c0_g1	1030	1050	1041	-27.00	-17.80	0.659259259259259	9	2-4,1049-1047;6-19,1045-1032	1-1,1050-1050[UP5];5-5,1046-1046[SIL];20-21,1031-1030[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AAGAAUGGAGAGGUCAAGGAA&AUCCAUGAUUUUUUUAUUCCU	3	0.999999840065999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN11253_c0_g1_1041_TPlot.pdf
TRINITY_DN11253_c0_g1:1042	si_a321	TRINITY_DN11253_c0_g1	1031	1051	1042	-26.70	-17.80	0.666666666666667	9.5	3-5,1049-1047;7-20,1045-1032	1-2,1051-1050[UP5];6-6,1046-1046[SIL];21-21,1031-1031[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	AGAAUGGAGAGGUCAAGGAAG&UAUCCAUGAUUUUUUUAUUCC	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN11253_c0_g1_1042_TPlot.pdf
TRINITY_DN11253_c0_g1:1044	si_a319	TRINITY_DN11253_c0_g1	1033	1053	1044	-22.40	-14.60	0.651785714285714	12	5-7,1049-1047;9-21,1045-1033	1-4,1053-1050[UP5];8-8,1046-1046[SIL]	(((((((((((((.(((....&....))).)))))))))))))	AAUGGAGAGGUCAAGGAAGUC&UUUAUCCAUGAUUUUUUUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN11253_c0_g1_1044_TPlot.pdf
TRINITY_DN11253_c0_g1:3083	si_a191	TRINITY_DN11253_c0_g1	3070	3092	3083	-32.00	-21.30	0.665625	7	2-11,3091-3082;13-16,3079-3076;17-21,3074-3070	1-1,3092-3092[UP5];12-12,3081-3080[AILt];x-x,3075-3075[BULt]	(((((.((((..((((((((((.&.))))))))))-.))))-)))))	UAUUAUGUGAUGUAGGGAAAGAA&AUCUUUCCCUG-UUCAC-UAAUA	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN11253_c0_g1_3083_TPlot.pdf
TRINITY_DN11253_c0_g1:3089	si_s77	TRINITY_DN11253_c0_g1	3078	3098	3089	-25.50	-16.70	0.654901960784314	6.5	2-16,3097-3083;18-18,3081-3081;20-21,3079-3078	1-1,3098-3098[UP5];17-17,3082-3082[SIL];19-19,3080-3080[SIL]	((.(.(((((((((((((((.&.))))))))))))))).).))	GAUGUAGGGAAAGAAGAAGGU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11253_c0_g1_3089_TPlot.pdf
TRINITY_DN11253_c0_g1:3090	si_s76	TRINITY_DN11253_c0_g1	3079	3099	3090	-23.60	-15.50	0.656779661016949	9.5	3-17,3097-3083;19-19,3081-3081	1-2,3099-3098[UP5];18-18,3082-3082[SIL];20-21,3080-3079[UP3]	..(.(((((((((((((((..&..))))))))))))))).)..	AUGUAGGGAAAGAAGAAGGUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11253_c0_g1_3090_TPlot.pdf
TRINITY_DN11253_c0_g1:720	si_a332	TRINITY_DN11253_c0_g1	709	728	720	-30.60	-20.00	0.65359477124183	7.5	1-7,728-722;9-17,721-713	8-8,x-x[BULq];18-21,712-709[UP3]	....(((((((((-(((((((&))))))).)))))))))....	GUAGGGGAUAAGG-AUAAAGA&UUUUUAUUCCUUGUCCCGAAA	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN11253_c0_g1_720_TPlot.pdf
TRINITY_DN11253_c0_g1:721	si_a331	TRINITY_DN11253_c0_g1	710	729	721	-30.60	-20.10	0.656862745098039	7.5	2-8,728-722;10-18,721-713	1-1,729-729[UP5];9-9,x-x[BULq];19-21,712-710[UP3]	...(((((((((-(((((((.&.))))))).)))))))))...	UAGGGGAUAAGG-AUAAAGAC&UUUUUUAUUCCUUGUCCCGAA	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN11253_c0_g1_721_TPlot.pdf
TRINITY_DN11253_c0_g1:722	si_a329	TRINITY_DN11253_c0_g1	712	731	722	-29.60	-20.10	0.679054054054054	9.5	4-10,728-722;12-20,721-713	1-3,731-729[UP5];11-11,x-x[BULq];21-21,712-712[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	GGGGAUAAGG-AUAAAGACGA&AUUUUUUUAUUCCUUGUCCCG	4	0.999994967703848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN11253_c0_g1_722_TPlot.pdf
TRINITY_DN11253_c0_g1:782	si_s69	TRINITY_DN11253_c0_g1	771	792	782	-23.40	-15.80	0.675213675213675	8	3-9,790-784;10-20,782-772	1-2,792-791[UP5];x-x,783-783[BULt];21-21,771-771[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	UAAAGAAAAAGAUGUAGAAGAA&AACUUCUAU-UUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11253_c0_g1_782_TPlot.pdf
TRINITY_DN11253_c0_g1:784	si_s68	TRINITY_DN11253_c0_g1	772	793	784	-23.10	-15.80	0.683982683982684	9	4-10,790-784;11-21,782-772	1-3,793-791[UP5];x-x,783-783[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AAAGAAAAAGAUGUAGAAGAAG&CAACUUCUAU-UUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11253_c0_g1_784_TPlot.pdf
TRINITY_DN11253_c0_g1:913	si_s804	TRINITY_DN11253_c0_g1	902	922	913	-27.90	-18.60	0.666666666666667	8	1-10,922-913;12-19,911-904	11-11,912-912[SIL];20-21,903-902[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	CUGAAGGUAAAGAGGGUGAAG&UUUUAUCUUCGUUACCUUUUC	3	0.99999999971679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN11253_c0_g1_913_TPlot.pdf
TRINITY_DN11253_c0_g1:916	si_s801	TRINITY_DN11253_c0_g1	905	926	916	-28.20	-18.40	0.652482269503546	9	1-2,926-925;4-13,922-913;15-21,911-905	3-3,924-923[AILt];14-14,912-912[SIL]	(((((((.((((((((((..((&))-.)))))))))).)))))))	AAGGUAAAGAGGGUGAAGCGAC&GU-AUUUUAUCUUCGUUACCUU	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN11253_c0_g1_916_TPlot.pdf
TRINITY_DN11254_c0_g1:1459	si_a320	TRINITY_DN11254_c0_g1	1448	1470	1459	-24.40	-17.10	0.700819672131148	7.5	2-5,1469-1466;6-21,1463-1448	1-1,1470-1470[UP5];x-x,1465-1464[BULt]	((((((((((((((((..((((.&.))))--))))))))))))))))	GGGUGGGAAAAUCAUGUAGAUAC&UUAUC--CAUGAUUUUUUUAUUC	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN11254_c0_g1_1459_TPlot.pdf
TRINITY_DN11254_c0_g1:1460	si_a319	TRINITY_DN11254_c0_g1	1449	1471	1460	-22.40	-15.00	0.669642857142857	9.5	3-6,1469-1466;7-21,1463-1449	1-2,1471-1470[UP5];x-x,1465-1464[BULt]	(((((((((((((((..((((..&..))))--)))))))))))))))	GGUGGGAAAAUCAUGUAGAUACA&UUUAUC--CAUGAUUUUUUUAUU	4	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN11254_c0_g1_1460_TPlot.pdf
TRINITY_DN11255_c0_g1:1040	si_a570	TRINITY_DN11255_c0_g1	1030	1048	1040	-31.90	-21.10	0.661442006269593	8	1-6,1048-1043;8-11,1042-1039;13-19,1038-1032	7-7,x-x[BULq];12-12,x-x[BULq];20-21,1031-1030[UP3]	..(((((((-((((-((((((&)))))).)))).)))))))..	AAACAGACG-ACGA-UCGCGG&CCGUGAAUCGUAUGUUUGUAA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN11255_c0_g1_1040_TPlot.pdf
TRINITY_DN11255_c0_g1:4694	si_s89	TRINITY_DN11255_c0_g1	4682	4703	4694	-35.30	-23.00	0.651558073654391	8.5	1-6,4703-4698;8-12,4696-4692;14-21,4689-4682	7-7,4697-4697[SIL];13-13,4691-4690[AILt]	((((((((..(((((.((((((&)))))).)))))-.))))))))	UGGAGUGAUUGAAGACGGAGGG&CCUUUCUUCUUC-UUCGCUUCG	2	0.999999999990943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN11255_c0_g1_4694_TPlot.pdf
TRINITY_DN11255_c0_g1:4696	si_s87	TRINITY_DN11255_c0_g1	4684	4705	4696	-32.90	-21.70	0.659574468085106	8	2-8,4704-4698;10-14,4696-4692;16-21,4689-4684	1-1,4705-4705[UP5];9-9,4697-4697[SIL];15-15,4691-4690[AILt]	((((((..(((((.(((((((.&.))))))).)))))-.))))))	GAGUGAUUGAAGACGGAGGGAU&UUCCUUUCUUCUUC-UUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN11255_c0_g1_4696_TPlot.pdf
TRINITY_DN11255_c0_g1:5168	si_s69	TRINITY_DN11255_c0_g1	5157	5177	5168	-23.40	-15.90	0.67948717948718	10	2-4,5176-5174;6-9,5172-5169;11-21,5167-5157	1-1,5177-5177[UP5];5-5,5173-5173[SIL];10-10,5168-5168[SIL]	(((((((((((.((((.(((.&.))).)))).)))))))))))	GAGGGAAGGAACGUGGUGGUG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11255_c0_g1_5168_TPlot.pdf
TRINITY_DN11255_c0_g1:804	si_a813	TRINITY_DN11255_c0_g1	794	814	804	-32.90	-21.70	0.659574468085106	8	3-7,812-808;8-12,806-802;14-19,801-796	1-2,814-813[UP5];x-x,807-807[BULt];13-13,x-x[BULq];20-21,795-794[UP3]	..((((((-(((((.(((((..&..)))))-))))).))))))..	CGCCUUUC-UCUUCGUUCGCGG&AAGCGAA-GAAGAAGAAAGGAA	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN11255_c0_g1_804_TPlot.pdf
TRINITY_DN11255_c0_g1:936	si_a800	TRINITY_DN11255_c0_g1	925	945	936	-33.70	-22.20	0.658753709198813	8	2-14,944-932;17-18,929-928	1-1,945-945[UP5];15-16,931-930[SIL];19-21,927-925[UP3]	...((..(((((((((((((.&.)))))))))))))..))...	GAGCGGCUCGGAUUGGAGAGC&AUUUUCCAAUCCGAAGCGAAG	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN11255_c0_g1_936_TPlot.pdf
TRINITY_DN11255_c0_g1:937	si_a799	TRINITY_DN11255_c0_g1	926	946	937	-32.50	-22.20	0.683076923076923	9	3-15,944-932;18-19,929-928	1-2,946-945[UP5];16-17,931-930[SIL];20-21,927-926[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	AGCGGCUCGGAUUGGAGAGCU&UAUUUUCCAAUCCGAAGCGAA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN11255_c0_g1_937_TPlot.pdf
TRINITY_DN11256_c0_g1:316	si_s93	TRINITY_DN11256_c0_g1	304	325	316	-34.80	-23.10	0.663793103448276	8	1-12,325-314;13-16,312-309	x-x,313-313[BULt];17-21,308-304[UP3]	.....((((.((((((((((((&))))))))))))-)))).....	UAGAAGAAGACGAAGAAGAGGA&UCUUCUUCUUCG-CUUCGGAUU	2	0.999999894860536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN11256_c0_g1_316_TPlot.pdf
TRINITY_DN11256_c0_g1:318	si_s91	TRINITY_DN11256_c0_g1	306	327	318	-34.70	-23.20	0.668587896253602	8	3-14,325-314;15-18,312-309	1-2,327-326[UP5];x-x,313-313[BULt];19-21,308-306[UP3]	...((((.((((((((((((..&..))))))))))))-))))...	GAAGAAGACGAAGAAGAGGACG&UUUCUUCUUCUUCG-CUUCGGA	4	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN11256_c0_g1_318_TPlot.pdf
TRINITY_DN11256_c0_g1:321	si_s88	TRINITY_DN11256_c0_g1	309	330	321	-34.80	-22.80	0.655172413793104	11	6-17,325-314;18-21,312-309	1-5,330-326[UP5];x-x,313-313[BULt]	((((.((((((((((((.....&.....))))))))))))-))))	GAAGACGAAGAAGAGGACGAUG&UCCUUUCUUCUUCUUCG-CUUC	2	0.999999999995708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN11256_c0_g1_321_TPlot.pdf
TRINITY_DN11256_c0_g1:325	si_s808	TRINITY_DN11256_c0_g1	314	335	325	-28.60	-20.40	0.713286713286713	8.5	1-9,335-327;11-19,324-316	10-10,326-325[AILt];20-21,315-314[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	CGAAGAAGAGGACGAUGAAGAU&AUCUUCGUU-ACCUUUUCUUAA	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN11256_c0_g1_325_TPlot.pdf
TRINITY_DN11256_c0_g1:328	si_s806	TRINITY_DN11256_c0_g1	316	337	328	-28.60	-22.10	0.772727272727273	7.5	1-11,337-327;13-21,324-316	12-12,326-325[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AAGAAGAGGACGAUGAAGAUGA&UUAUCUUCGUU-ACCUUUUCUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN11256_c0_g1_328_TPlot.pdf
TRINITY_DN11256_c0_g1:329	si_s805	TRINITY_DN11256_c0_g1	317	338	329	-28.60	-21.40	0.748251748251748	7.5	2-12,337-327;14-21,324-317	1-1,338-338[UP5];13-13,326-325[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	AGAAGAGGACGAUGAAGAUGAU&UUUAUCUUCGUU-ACCUUUUCU	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN11256_c0_g1_329_TPlot.pdf
TRINITY_DN11256_c0_g1:390	si_s73	TRINITY_DN11256_c0_g1	377	400	390	-24.00	-15.70	0.654166666666667	7	1-9,400-392;10-13,390-387;14-21,384-377	x-x,391-391[BULt];x-x,386-385[BULt]	((((((((..((((.(((((((((&)))))))))-))))--))))))))	AGAGGAAGAUGAAAUAGAAAUGGA&UCUAUUUUU-UUUC--UUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11256_c0_g1_390_TPlot.pdf
TRINITY_DN1125_c0_g1:1069	si_a789	TRINITY_DN1125_c0_g1	1058	1083	1069	-24.80	-16.30	0.657258064516129	17.5	1-9,1083-1075;10-18,1069-1061	x-x,1074-1070[BULt];19-21,1060-1058[UP3]	...(((((((((.....(((((((((&)))))))))-----)))))))))...	CAAGGGAAAUAGCCACAGAGAGUGGA&UCUAUUUUU-----CUAUUUUCCAAU	3	0.999999999999965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1125_c0_g1_1069_TPlot.pdf
TRINITY_DN1125_c0_g1:1075	si_a788	TRINITY_DN1125_c0_g1	1059	1084	1075	-24.80	-17.00	0.685483870967742	16.5	1-10,1084-1075;11-19,1069-1061	x-x,1074-1070[BULt];20-21,1060-1059[UP3]	..(((((((((.....((((((((((&))))))))))-----)))))))))..	AAGGGAAAUAGCCACAGAGAGUGGAA&UUCUAUUUUU-----CUAUUUUCCAA	3	0.999999998510517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1125_c0_g1_1075_TPlot.pdf
TRINITY_DN1125_c0_g1:1076	si_a787	TRINITY_DN1125_c0_g1	1060	1085	1076	-26.30	-17.20	0.653992395437262	16.5	2-11,1084-1075;12-20,1069-1061	1-1,1085-1085[UP5];x-x,1074-1070[BULt];21-21,1060-1060[UP3]	.(((((((((.....((((((((((.&.))))))))))-----))))))))).	AGGGAAAUAGCCACAGAGAGUGGAAU&CUUCUAUUUUU-----CUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1125_c0_g1_1076_TPlot.pdf
TRINITY_DN1125_c0_g1:872	si_s90	TRINITY_DN1125_c0_g1	861	881	872	-35.30	-25.60	0.725212464589235	5.5	1-10,881-872;12-19,870-863	11-11,871-871[SIL];20-21,862-861[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	CAGGAGCGAACAAGAAGAGAG&CUUUCUUCUUCUUCGCUUCGG	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1125_c0_g1_872_TPlot.pdf
TRINITY_DN1125_c0_g1:874	si_s88	TRINITY_DN1125_c0_g1	863	883	874	-34.80	-28.60	0.82183908045977	3.5	2-12,882-872;14-21,870-863	1-1,883-883[UP5];13-13,871-871[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	GGAGCGAACAAGAAGAGAGGG&UCCUUUCUUCUUCUUCGCUUC	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1125_c0_g1_874_TPlot.pdf
TRINITY_DN1125_c0_g1:875	si_s87	TRINITY_DN1125_c0_g1	864	884	875	-32.90	-27.90	0.848024316109423	3.5	1-13,884-872;15-21,870-864	14-14,871-871[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAGCGAACAAGAAGAGAGGGA&UUCCUUUCUUCUUCUUCGCUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1125_c0_g1_875_TPlot.pdf
TRINITY_DN1125_c0_g1:876	si_s86	TRINITY_DN1125_c0_g1	865	885	876	-32.90	-27.50	0.835866261398176	3	1-14,885-872;16-21,870-865	15-15,871-871[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	AGCGAACAAGAAGAGAGGGAA&UUUCCUUUCUUCUUCUUCGCU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1125_c0_g1_876_TPlot.pdf
TRINITY_DN1125_c0_g1:882	si_s81	TRINITY_DN1125_c0_g1	870	891	882	-28.90	-22.00	0.761245674740484	5	1-10,891-882;11-19,880-872	x-x,881-881[BULt];20-21,871-870[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	ACAAGAAGAGAGGGAAAGAAAA&UUUUCUUUCC-UUUCUUCUUCU	2	0.999932839608669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1125_c0_g1_882_TPlot.pdf
TRINITY_DN1125_c0_g1:884	si_s79	TRINITY_DN1125_c0_g1	872	893	884	-26.20	-23.80	0.908396946564886	2.5	1-12,893-882;13-21,880-872	x-x,881-881[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	AAGAAGAGAGGGAAAGAAAAAA&UUUUUUCUUUCC-UUUCUUCUU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1125_c0_g1_884_TPlot.pdf
TRINITY_DN1125_c0_g1:886	si_s77	TRINITY_DN1125_c0_g1	874	895	886	-25.50	-22.80	0.894117647058824	2.5	2-14,894-882;15-21,880-874	1-1,895-895[UP5];x-x,881-881[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	GAAGAGAGGGAAAGAAAAAAAG&UUUUUUUUCUUUCC-UUUCUUC	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1125_c0_g1_886_TPlot.pdf
TRINITY_DN1125_c0_g1:887	si_s76	TRINITY_DN1125_c0_g1	875	896	887	-23.60	-19.60	0.830508474576271	4.5	3-15,894-882;16-21,880-875	1-2,896-895[UP5];x-x,881-881[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AAGAGAGGGAAAGAAAAAAAGA&AUUUUUUUUCUUUCC-UUUCUU	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1125_c0_g1_887_TPlot.pdf
TRINITY_DN1125_c0_g1:888	si_s75	TRINITY_DN1125_c0_g1	876	897	888	-24.00	-18.70	0.779166666666667	6.5	4-16,894-882;17-21,880-876	1-3,897-895[UP5];x-x,881-881[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	AGAGAGGGAAAGAAAAAAAGAC&UAUUUUUUUUCUUUCC-UUUCU	2	0.999657069035875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1125_c0_g1_888_TPlot.pdf
TRINITY_DN1125_c0_g1:891	si_s72	TRINITY_DN1125_c0_g1	880	900	891	-24.10	-16.70	0.692946058091286	11.5	7-21,894-880	1-6,900-895[UP5]	(((((((((((((((......&......)))))))))))))))	AGGGAAAGAAAAAAAGACAAG&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999999926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1125_c0_g1_891_TPlot.pdf
TRINITY_DN1125_c0_g1:892	si_s71	TRINITY_DN1125_c0_g1	881	906	892	-25.70	-17.92	0.69727626459144	13.5	1-5,906-902;7-21,895-881	6-6,901-896[AILt]	(((((((((((((((......(((((&)))))-----.)))))))))))))))	GGGAAAGAAAAAAAGACAAGCAGAAG&CUUCU-----AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1125_c0_g1_892_TPlot.pdf
TRINITY_DN11268_c0_g1:2818	si_a64	TRINITY_DN11268_c0_g1	2807	2827	2818	-29.40	-21.70	0.738095238095238	5.5	2-9,2826-2819;11-20,2817-2808	1-1,2827-2827[UP5];10-10,2818-2818[SIL];21-21,2807-2807[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UAAUAAUUUGAUAGGAGCGAA&CUCGCUUCUUUCAAAUUGUUU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN11268_c0_g1_2818_TPlot.pdf
TRINITY_DN1126_c0_g1:1382	si_s79	TRINITY_DN1126_c0_g1	1370	1391	1382	-26.20	-17.30	0.66030534351145	7	2-14,1390-1378;16-16,1375-1375;18-21,1373-1370	1-1,1391-1391[UP5];15-15,1377-1376[AILt];17-17,1374-1374[SIL]	((((.(..(((((((((((((.&.)))))))))))))-.).))))	GAGACGUUGAGGAAAGAAGGAU&UUUUUUCUUUCCUU-UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1126_c0_g1_1382_TPlot.pdf
TRINITY_DN1126_c0_g1:1441	si_s78	TRINITY_DN1126_c0_g1	1426	1450	1441	-26.20	-17.10	0.652671755725191	10	1-4,1450-1447;7-15,1444-1436;16-21,1431-1426	5-6,1446-1445[SIL];x-x,1435-1432[BULt]	((((((....(((((((((..((((&))))..)))))))))----))))))	AGGAGACACUAGGGAAGGAUUAAAA&UUUUUUUCUUUCCUU----UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1126_c0_g1_1441_TPlot.pdf
TRINITY_DN1126_c0_g1:1444	si_s74	TRINITY_DN1126_c0_g1	1433	1453	1444	-25.00	-17.40	0.696	9.5	1-7,1453-1447;10-18,1444-1436	8-9,1446-1445[SIL];19-21,1435-1433[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	ACUAGGGAAGGAUUAAAAUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1126_c0_g1_1444_TPlot.pdf
TRINITY_DN1126_c0_g1:1446	si_s72	TRINITY_DN1126_c0_g1	1435	1455	1446	-24.10	-17.60	0.730290456431535	9	2-9,1454-1447;12-20,1444-1436	1-1,1455-1455[UP5];10-11,1446-1445[SIL];21-21,1435-1435[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	UAGGGAAGGAUUAAAAUGGGU&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999994725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1126_c0_g1_1446_TPlot.pdf
TRINITY_DN11272_c0_g1:2661	si_a635	TRINITY_DN11272_c0_g1	2650	2671	2661	-26.10	-17.40	0.666666666666667	6.5	2-4,2670-2668;5-15,2666-2656;17-21,2654-2650	1-1,2671-2671[UP5];x-x,2667-2667[BULt];16-16,2655-2655[SIL]	(((((.(((((((((((.(((.&.)))-))))))))))).)))))	GUUGCACGAGAAAAUCGAACAA&AUGU-CGAUUUUUUUGAGUAAU	1	0.243399663926162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN11272_c0_g1_2661_TPlot.pdf
TRINITY_DN11275_c0_g1:154	si_a553	TRINITY_DN11275_c0_g1	143	164	154	-33.70	-23.00	0.682492581602374	11	1-4,164-161;6-9,159-156;11-21,153-143	5-5,160-160[SIL];10-10,155-154[AILt]	(((((((((((..((((.((((&)))).))))-.)))))))))))	AUGGGGAGGUGCUGGAGCUGGA&UCUAUUUCU-UUAUCUCCCCGU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN11275_c0_g1_154_TPlot.pdf
TRINITY_DN11275_c0_g1:156	si_a552	TRINITY_DN11275_c0_g1	144	165	156	-33.10	-22.80	0.688821752265861	11.5	1-5,165-161;7-10,159-156;12-20,153-145	6-6,160-160[SIL];11-11,155-154[AILt];21-21,144-144[UP3]	.(((((((((..((((.(((((&))))).))))-.))))))))).	UGGGGAGGUGCUGGAGCUGGAU&AUCUAUUUCU-UUAUCUCCCCG	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN11275_c0_g1_156_TPlot.pdf
TRINITY_DN11275_c0_g1:157	si_a551	TRINITY_DN11275_c0_g1	145	166	157	-31.60	-22.40	0.708860759493671	11	2-6,165-161;8-11,159-156;13-21,153-145	1-1,166-166[UP5];7-7,160-160[SIL];12-12,155-154[AILt]	(((((((((..((((.(((((.&.))))).))))-.)))))))))	GGGGAGGUGCUGGAGCUGGAUG&AAUCUAUUUCU-UUAUCUCCCC	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN11275_c0_g1_157_TPlot.pdf
TRINITY_DN11275_c0_g1:555	si_a701	TRINITY_DN11275_c0_g1	544	565	555	-31.20	-22.20	0.711538461538462	11	2-9,564-557;11-18,554-547	1-1,565-565[UP5];10-10,556-555[AILt];19-21,546-544[UP3]	...((((((((..((((((((.&.))))))))-.))))))))...	CGGUUGGGGUGGAGCCGGUUGG&ACAACUGGU-ACAUUCCAAAAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN11275_c0_g1_555_TPlot.pdf
TRINITY_DN11275_c0_g1:591	si_a194	TRINITY_DN11275_c0_g1	580	600	591	-29.40	-19.80	0.673469387755102	11	1-15,600-586	16-21,585-580[UP3]	......(((((((((((((((&)))))))))))))))......	GGGAAAUGGUGGAUGGGGAGG&UUUCCCUGUUCACUAAUAAAU	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN11275_c0_g1_591_TPlot.pdf
TRINITY_DN11278_c0_g1:1608	si_s69	TRINITY_DN11278_c0_g1	1597	1617	1608	-23.40	-15.30	0.653846153846154	6.5	1-7,1617-1611;10-12,1608-1606;14-21,1604-1597	8-9,1610-1609[SIL];13-13,1605-1605[SIL]	((((((((.(((..(((((((&)))))))..))).))))))))	GGGAGAGAUAAACAAGAAGUU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11278_c0_g1_1608_TPlot.pdf
TRINITY_DN11278_c0_g1:1609	si_s68	TRINITY_DN11278_c0_g1	1598	1618	1609	-23.10	-15.20	0.658008658008658	6.5	1-8,1618-1611;11-13,1608-1606;15-21,1604-1598	9-10,1610-1609[SIL];14-14,1605-1605[SIL]	(((((((.(((..((((((((&))))))))..))).)))))))	GGAGAGAUAAACAAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11278_c0_g1_1609_TPlot.pdf
TRINITY_DN11278_c0_g1:1611	si_s66	TRINITY_DN11278_c0_g1	1600	1620	1611	-26.30	-18.70	0.711026615969582	5.5	1-10,1620-1611;13-15,1608-1606;17-21,1604-1600	11-12,1610-1609[SIL];16-16,1605-1605[SIL]	(((((.(((..((((((((((&))))))))))..))).)))))	AGAGAUAAACAAGAAGUUGCU&AGCAACUUCUAUUUUUUUUCU	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN11278_c0_g1_1611_TPlot.pdf
TRINITY_DN11278_c0_g1:1616	si_s61	TRINITY_DN11278_c0_g1	1605	1625	1616	-26.50	-20.10	0.758490566037736	11	3-15,1623-1611	1-2,1625-1624[UP5];16-21,1610-1605[UP3]	......(((((((((((((..&..)))))))))))))......	UAAACAAGAAGUUGCUGGCAG&AAGUUAGCAACUUCUAUUUUU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN11278_c0_g1_1616_TPlot.pdf
TRINITY_DN11278_c0_g1:1620	si_s57	TRINITY_DN11278_c0_g1	1609	1629	1620	-29.30	-20.10	0.686006825938567	15	7-19,1623-1611	1-6,1629-1624[UP5];20-21,1610-1609[UP3]	..(((((((((((((......&......)))))))))))))..	CAAGAAGUUGCUGGCAGAGGG&UUUCAAGUUAGCAACUUCUAU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN11278_c0_g1_1620_TPlot.pdf
TRINITY_DN11278_c0_g1:346	si_a107	TRINITY_DN11278_c0_g1	335	355	346	-30.50	-20.50	0.672131147540984	5	1-11,355-345;13-17,344-340;18-21,338-335	12-12,x-x[BULq];x-x,339-339[BULt]	((((.(((((-(((((((((((&))))))))))).)))))-))))	GCGGUGUUCG-AUUUUAUCUUC&GAAGAUAAAAUACGAGC-UUGU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a107_TRINITY_DN11278_c0_g1_346_TPlot.pdf
TRINITY_DN11278_c0_g1:347	si_a106	TRINITY_DN11278_c0_g1	336	356	347	-31.20	-20.80	0.666666666666667	3.5	1-12,356-345;14-18,344-340;19-21,338-336	13-13,x-x[BULq];x-x,339-339[BULt]	(((.(((((-((((((((((((&)))))))))))).)))))-)))	CGGUGUUCG-AUUUUAUCUUCG&CGAAGAUAAAAUACGAGC-UUG	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a106_TRINITY_DN11278_c0_g1_347_TPlot.pdf
TRINITY_DN11278_c0_g1:348	si_a105	TRINITY_DN11278_c0_g1	338	357	348	-30.30	-22.50	0.742574257425743	3.5	1-13,357-345;15-19,344-340	14-14,x-x[BULq];20-21,339-338[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	GUGUUCG-AUUUUAUCUUCGU&ACGAAGAUAAAAUACGAGCUU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a105_TRINITY_DN11278_c0_g1_348_TPlot.pdf
TRINITY_DN11278_c0_g1:349	si_a104	TRINITY_DN11278_c0_g1	339	358	349	-30.30	-22.70	0.749174917491749	3.5	2-14,357-345;16-20,344-340	1-1,358-358[UP5];15-15,x-x[BULq];21-21,339-339[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	UGUUCG-AUUUUAUCUUCGUA&AACGAAGAUAAAAUACGAGCU	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a104_TRINITY_DN11278_c0_g1_349_TPlot.pdf
TRINITY_DN11278_c0_g1:350	si_a103	TRINITY_DN11278_c0_g1	340	359	350	-30.00	-22.30	0.743333333333333	4.5	3-15,357-345;17-21,344-340	1-2,359-358[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	GUUCG-AUUUUAUCUUCGUAC&UAACGAAGAUAAAAUACGAGC	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a103_TRINITY_DN11278_c0_g1_350_TPlot.pdf
TRINITY_DN11278_c0_g1:613	si_a314	TRINITY_DN11278_c0_g1	602	622	613	-27.10	-19.30	0.712177121771218	7	1-8,622-615;10-14,613-609;16-20,607-603	9-9,614-614[SIL];15-15,608-608[SIL];21-21,602-602[UP3]	.(((((.(((((.((((((((&)))))))).))))).))))).	CAAAGUGAUGGACGAGUCCAG&UUGGAUUUAUCCAUGAUUUUU	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN11278_c0_g1_613_TPlot.pdf
TRINITY_DN11278_c0_g1:947	si_a83	TRINITY_DN11278_c0_g1	935	956	947	-24.50	-16.00	0.653061224489796	7	2-12,955-945;14-21,942-935	1-1,956-956[UP5];13-13,944-943[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	AUCUUUUUGAUGAUGAUGAAAG&UUUUCAUUAUUA-AGAAAAGGU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN11278_c0_g1_947_TPlot.pdf
TRINITY_DN11278_c0_g1:948	si_a82	TRINITY_DN11278_c0_g1	936	957	948	-23.70	-16.20	0.683544303797468	6.5	1-13,957-945;15-20,942-937	14-14,944-943[AILt];21-21,936-936[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	UCUUUUUGAUGAUGAUGAAAGA&UUUUUCAUUAUUA-AGAAAAGG	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN11278_c0_g1_948_TPlot.pdf
TRINITY_DN11278_c0_g1:949	si_a81	TRINITY_DN11278_c0_g1	937	958	949	-23.00	-15.20	0.660869565217391	6	2-14,957-945;16-21,942-937	1-1,958-958[UP5];15-15,944-943[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	CUUUUUGAUGAUGAUGAAAGAA&GUUUUUCAUUAUUA-AGAAAAG	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN11278_c0_g1_949_TPlot.pdf
TRINITY_DN1127_c0_g1:1388	si_a785	TRINITY_DN1127_c0_g1	1377	1398	1388	-25.90	-18.30	0.706563706563707	7.5	1-9,1398-1390;10-16,1388-1382;18-21,1380-1377	x-x,1389-1389[BULt];17-17,1381-1381[SIL]	((((.(((((((.(((((((((&)))))))))-))))))).))))	GAGACUGGGAGACAUGGAAGGG&CUCUUCUAU-UUUUCUAUUUUC	4	0.999999994685875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1127_c0_g1_1388_TPlot.pdf
TRINITY_DN1127_c0_g1:2518	si_s369	TRINITY_DN1127_c0_g1	2507	2527	2518	-42.00	-28.60	0.680952380952381	9	4-11,2524-2517;13-21,2515-2507	1-3,2527-2525[UP5];12-12,2516-2516[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GACGCGCGGUCGAUUGGUGGA&UGAACCGAUCGCUCGCGUGUC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN1127_c0_g1_2518_TPlot.pdf
TRINITY_DN11280_c2_g1:146	si_a760	TRINITY_DN11280_c2_g1	135	155	146	-31.10	-20.50	0.659163987138264	8.5	1-4,155-152;6-18,150-138	5-5,151-151[SIL];19-21,137-135[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	GGGGAUCAAAAAUCCGCGGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999999996019627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN11280_c2_g1_146_TPlot.pdf
TRINITY_DN11281_c0_g1:417	si_a629	TRINITY_DN11281_c0_g1	407	426	417	-26.30	-17.60	0.669201520912548	8	1-5,426-422;8-12,419-415;14-21,414-407	6-7,421-420[SIL];13-13,x-x[BULq]	((((((((-(((((..(((((&)))))..))))).))))))))	CGGAAAAA-CGACAGUGUGCG&CGUAUUAUGUCGAUUUUUUUG	2	0.998270602251896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN11281_c0_g1_417_TPlot.pdf
TRINITY_DN11284_c0_g2:349	si_s73	TRINITY_DN11284_c0_g2	337	358	349	-24.00	-16.40	0.683333333333333	5.5	1-6,358-353;8-14,351-345;15-19,343-339	7-7,352-352[SIL];x-x,344-344[BULt];20-21,338-337[UP3]	..(((((.(((((((.((((((&)))))).)))))))-)))))..	AUGGGAACAGAAAAAUAAUAGA&UCUAUUUUUUUUCU-UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11284_c0_g2_349_TPlot.pdf
TRINITY_DN11284_c0_g2:351	si_s71	TRINITY_DN11284_c0_g2	339	360	351	-25.70	-17.50	0.680933852140078	4.5	2-8,359-353;10-16,351-345;17-21,343-339	1-1,360-360[UP5];9-9,352-352[SIL];x-x,344-344[BULt]	(((((.(((((((.(((((((.&.))))))).)))))))-)))))	GGGAACAGAAAAAUAAUAGAAA&CUUCUAUUUUUUUUCU-UUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN11284_c0_g2_351_TPlot.pdf
TRINITY_DN11288_c0_g1:95	si_a250	TRINITY_DN11288_c0_g1	79	104	95	-41.50	-28.20	0.679518072289157	12	4-13,101-92;14-21,86-79	1-3,104-102[UP5];x-x,91-87[BULt]	((((((((.....((((((((((...&...))))))))))-----))))))))	UCCUCGAUAUAGGGCGAUCGGGGUAU&AUCCCCCGAUUGU-----AUCGAGGG	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a250_TRINITY_DN11288_c0_g1_95_TPlot.pdf
TRINITY_DN1128_c0_g1:1399	si_a635	TRINITY_DN1128_c0_g1	1388	1408	1399	-26.10	-17.70	0.67816091954023	8	1-8,1408-1401;10-18,1399-1391	9-9,1400-1400[SIL];19-21,1390-1388[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CAAAUUCAGAGGCAUCGACAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999999973608088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1128_c0_g1_1399_TPlot.pdf
TRINITY_DN1128_c0_g1:1400	si_a634	TRINITY_DN1128_c0_g1	1389	1409	1400	-26.40	-17.70	0.670454545454545	8	2-9,1408-1401;11-19,1399-1391	1-1,1409-1409[UP5];10-10,1400-1400[SIL];20-21,1390-1389[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AAAUUCAGAGGCAUCGACAUU&UAUGUCGAUUUUUUUGAGUAA	3	0.999999987265962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1128_c0_g1_1400_TPlot.pdf
TRINITY_DN1128_c0_g1:1401	si_a633	TRINITY_DN1128_c0_g1	1390	1410	1401	-26.40	-17.70	0.670454545454545	8.5	3-10,1408-1401;12-20,1399-1391	1-2,1410-1409[UP5];11-11,1400-1400[SIL];21-21,1390-1390[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	AAUUCAGAGGCAUCGACAUUA&UUAUGUCGAUUUUUUUGAGUA	3	0.999999963512878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1128_c0_g1_1401_TPlot.pdf
TRINITY_DN1128_c0_g1:1402	si_a632	TRINITY_DN1128_c0_g1	1391	1411	1402	-26.10	-17.40	0.666666666666667	9	4-11,1408-1401;13-21,1399-1391	1-3,1411-1409[UP5];12-12,1400-1400[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AUUCAGAGGCAUCGACAUUAC&AUUAUGUCGAUUUUUUUGAGU	3	0.999999959626296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1128_c0_g1_1402_TPlot.pdf
TRINITY_DN1128_c0_g1:1709	si_a632	TRINITY_DN1128_c0_g1	1698	1718	1709	-26.10	-17.10	0.655172413793103	10	4-21,1715-1698	1-3,1718-1716[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUUCAGAGGGAUUGAUAUUAC&AUUAUGUCGAUUUUUUUGAGU	4	0.999999999890343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1128_c0_g1_1709_TPlot.pdf
TRINITY_DN11290_c0_g1:346	si_a499	TRINITY_DN11290_c0_g1	335	354	346	-35.20	-24.80	0.704545454545454	6	1-1,354-354;3-21,353-335	2-2,x-x[BULq]	(((((((((((((((((((-(&).)))))))))))))))))))	CUAAGGAGGGUGAAGAACG-C&GUCGUUUUUCGUCUUCCUUGG	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN11290_c0_g1_346_TPlot.pdf
TRINITY_DN1129_c0_g1:1979	si_a418	TRINITY_DN1129_c0_g1	1968	1988	1979	-21.20	-13.90	0.655660377358491	7.5	4-19,1985-1970	1-3,1988-1986[UP5];20-21,1969-1968[UP3]	..((((((((((((((((...&...))))))))))))))))..	GACUUAUAUUUAUUUAAAAUA&AUAUUUAAAUAAAUAUAGGAU	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN1129_c0_g1_1979_TPlot.pdf
TRINITY_DN112_c0_g1:1605	si_s524	TRINITY_DN112_c0_g1	1594	1614	1605	-23.90	-17.50	0.732217573221757	6.5	1-4,1614-1611;6-19,1609-1596	5-5,1610-1610[SIL];20-21,1595-1594[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	CAGAAGGUGAUUUCGAUUUGA&UUAAUUCGAAAUCAUUUUUGA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN112_c0_g1_1605_TPlot.pdf
TRINITY_DN112_c0_g1:1607	si_s522	TRINITY_DN112_c0_g1	1596	1616	1607	-23.80	-17.70	0.743697478991597	7.5	3-6,1614-1611;8-21,1609-1596	1-2,1616-1615[UP5];7-7,1610-1610[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAAGGUGAUUUCGAUUUGAAG&UCUUAAUUCGAAAUCAUUUUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN112_c0_g1_1607_TPlot.pdf
TRINITY_DN112_c0_g1:1608	si_s521	TRINITY_DN112_c0_g1	1597	1618	1608	-23.90	-17.32	0.724686192468619	10	1-5,1618-1614;9-21,1609-1597	6-8,1613-1610[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	AAGGUGAUUUCGAUUUGAAGGA&UUCUU-AAUUCGAAAUCAUUUU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN112_c0_g1_1608_TPlot.pdf
TRINITY_DN112_c0_g1:1609	si_s520	TRINITY_DN112_c0_g1	1598	1619	1609	-24.00	-17.72	0.738333333333333	10	1-6,1619-1614;10-21,1609-1598	7-9,1613-1610[AILt]	((((((((((((....((((((&))))))-...))))))))))))	AGGUGAUUUCGAUUUGAAGGAU&AUUCUU-AAUUCGAAAUCAUUU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN112_c0_g1_1609_TPlot.pdf
TRINITY_DN112_c0_g1:1611	si_s518	TRINITY_DN112_c0_g1	1600	1621	1611	-24.60	-19.02	0.773170731707317	9.5	1-8,1621-1614;12-21,1609-1600	9-11,1613-1610[AILt]	((((((((((....((((((((&))))))))-...))))))))))	GUGAUUUCGAUUUGAAGGAUAU&AUAUUCUU-AAUUCGAAAUCAU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN112_c0_g1_1611_TPlot.pdf
TRINITY_DN112_c0_g1:1614	si_s516	TRINITY_DN112_c0_g1	1602	1623	1614	-25.80	-17.62	0.682945736434108	9	2-10,1622-1614;14-21,1609-1602	1-1,1623-1623[UP5];11-13,1613-1610[AILt]	((((((((....(((((((((.&.)))))))))-...))))))))	GAUUUCGAUUUGAAGGAUAUAA&CUAUAUUCUU-AAUUCGAAAUC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN112_c0_g1_1614_TPlot.pdf
TRINITY_DN11304_c0_g1:347	si_a92	TRINITY_DN11304_c0_g1	336	356	347	-28.60	-18.80	0.657342657342657	8.5	4-20,353-337	1-3,356-354[UP5];21-21,336-336[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUCUUUGUUAUCUUUUUUAAA&UUAAGAAAAGGUAACGAAGAU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN11304_c0_g1_347_TPlot.pdf
TRINITY_DN1130_c0_g2:4180	si_a524	TRINITY_DN1130_c0_g2	4168	4190	4180	-42.50	-27.80	0.654117647058824	10.5	5-6,4186-4185;7-18,4183-4172;19-21,4170-4168	1-4,4190-4187[UP5];x-x,4184-4184[BULt];x-x,4171-4171[BULt]	(((.((((((((((((.((....&....))-))))))))))))-)))	AUCAGCUUGCGUGUCCAGCGUCC&UAAGGC-GGACACGCGAGC-GAU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a524_TRINITY_DN1130_c0_g2_4180_TPlot.pdf
TRINITY_DN1130_c0_g2:4453	si_a630	TRINITY_DN1130_c0_g2	4442	4462	4453	-25.80	-17.78	0.689147286821705	8.5	1-15,4462-4448;19-21,4444-4442	16-18,4447-4445[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	UCAUGCAGAUUGGCGUGGUAC&GUAUUAUGUCGAUUUUUUUGA	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN1130_c0_g2_4453_TPlot.pdf
TRINITY_DN1130_c0_g2:4455	si_a628	TRINITY_DN1130_c0_g2	4444	4465	4455	-27.10	-17.90	0.660516605166052	11	1-2,4465-4464;3-17,4462-4448	x-x,4463-4463[BULt];18-21,4447-4444[UP3]	....(((((((((((((((.((&))-)))))))))))))))....	AUGCAGAUUGGCGUGGUACAGC&GC-GUAUUAUGUCGAUUUUUUU	4	0.999999917251805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN1130_c0_g2_4455_TPlot.pdf
TRINITY_DN1130_c0_g2:4942	si_s758	TRINITY_DN1130_c0_g2	4931	4951	4942	-23.50	-15.80	0.672340425531915	14.5	7-18,4945-4934	1-6,4951-4946[UP5];19-21,4933-4931[UP3]	...((((((((((((......&......))))))))))))...	UAAUAGUCGUUGUUGCAUUCC&UUAAAACAACAACGAUUAAUU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN1130_c0_g2_4942_TPlot.pdf
TRINITY_DN1130_c1_g1:1711	si_s79	TRINITY_DN1130_c1_g1	1701	1720	1711	-26.20	-17.20	0.656488549618321	7	3-14,1718-1707;17-21,1705-1701	1-2,1720-1719[UP5];15-16,1706-1706[AILq]	(((((.-((((((((((((..&..))))))))))))..)))))	AAGGAU-GAGGAAAGAAGAUC&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1130_c1_g1_1711_TPlot.pdf
TRINITY_DN11313_c0_g1:199	si_a401	TRINITY_DN11313_c0_g1	188	208	199	-22.60	-15.50	0.685840707964602	10.5	1-5,208-204;8-17,201-192	6-7,203-202[SIL];18-21,191-188[UP3]	....((((((((((..(((((&)))))..))))))))))....	UUAAAGACAAGACAUGUCUGU&AUAGAAUUGUUUUGUUUAUAU	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN11313_c0_g1_199_TPlot.pdf
TRINITY_DN11313_c0_g1:200	si_a400	TRINITY_DN11313_c0_g1	189	209	200	-22.80	-15.50	0.679824561403509	10.5	2-6,208-204;9-18,201-192	1-1,209-209[UP5];7-8,203-202[SIL];19-21,191-189[UP3]	...((((((((((..(((((.&.)))))..))))))))))...	UAAAGACAAGACAUGUCUGUU&UAUAGAAUUGUUUUGUUUAUA	3	0.999999585852286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN11313_c0_g1_200_TPlot.pdf
TRINITY_DN11313_c0_g1:201	si_a399	TRINITY_DN11313_c0_g1	190	210	201	-22.60	-15.50	0.685840707964602	11	3-7,208-204;10-19,201-192	1-2,210-209[UP5];8-9,203-202[SIL];20-21,191-190[UP3]	..((((((((((..(((((..&..)))))..))))))))))..	AAAGACAAGACAUGUCUGUUA&AUAUAGAAUUGUUUUGUUUAU	2	0.999384461095691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN11313_c0_g1_201_TPlot.pdf
TRINITY_DN11313_c0_g1:202	si_a398	TRINITY_DN11313_c0_g1	191	211	202	-22.40	-15.50	0.691964285714286	12	4-8,208-204;11-20,201-192	1-3,211-209[UP5];9-10,203-202[SIL];21-21,191-191[UP3]	.((((((((((..(((((...&...)))))..)))))))))).	AAGACAAGACAUGUCUGUUAA&AAUAUAGAAUUGUUUUGUUUA	2	0.998684840499939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN11313_c0_g1_202_TPlot.pdf
TRINITY_DN11313_c0_g1:803	si_s68	TRINITY_DN11313_c0_g1	792	812	803	-23.10	-15.40	0.666666666666667	10.5	4-7,809-806;10-21,803-792	1-3,812-810[UP5];8-9,805-804[SIL]	((((((((((((..((((...&...))))..))))))))))))	AAAGAAGAAGAAGUGAAGAAU&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11313_c0_g1_803_TPlot.pdf
TRINITY_DN11313_c0_g1:894	si_a318	TRINITY_DN11313_c0_g1	883	904	894	-22.50	-15.80	0.702222222222222	8	1-9,904-896;10-19,894-885	x-x,895-895[BULt];20-21,884-883[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	GAAGAAGAAUUACUGGAUGGAU&AUUUAUCCA-UGAUUUUUUUAU	3	0.9999995509213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN11313_c0_g1_894_TPlot.pdf
TRINITY_DN1131_c0_g1:14	si_s426	TRINITY_DN1131_c0_g1	1	23	14	-23.60	-15.58	0.660169491525424	9	1-13,23-11;16-19,6-3	14-15,10-7[AILt];20-21,2-1[UP3]	..((((....(((((((((((((&)))))))))))))--..))))..	GAGUGAACGAGUUGUUGUGUAGA&UCUAUAUAACAAU--AAUUACAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN1131_c0_g1_14_TPlot.pdf
TRINITY_DN1131_c0_g1:554	si_s86	TRINITY_DN1131_c0_g1	543	564	554	-32.90	-23.40	0.711246200607903	8	3-4,562-561;5-19,559-545	1-2,564-563[UP5];x-x,560-560[BULt];20-21,544-543[UP3]	..(((((((((((((((.((..&..))-)))))))))))))))..	CCCGAAGAAGAAGAAGGCGAUA&UUUC-CUUUCUUCUUCUUCGCU	2	0.999987329205299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1131_c0_g1_554_TPlot.pdf
TRINITY_DN1131_c0_g1:555	si_s85	TRINITY_DN1131_c0_g1	544	566	555	-33.80	-24.30	0.718934911242604	6	1-3,566-564;4-5,562-561;6-20,559-545	x-x,563-563[BULt];x-x,560-560[BULt];21-21,544-544[UP3]	.(((((((((((((((.((.(((&)))-))-))))))))))))))).	CCGAAGAAGAAGAAGGCGAUAAG&CUU-UC-CUUUCUUCUUCUUCGC	4	0.999995171230596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1131_c0_g1_555_TPlot.pdf
TRINITY_DN1131_c0_g1:557	si_s83	TRINITY_DN1131_c0_g1	546	568	557	-30.90	-24.80	0.802588996763754	5	1-5,568-564;6-7,562-561;8-21,559-546	x-x,563-563[BULt];x-x,560-560[BULt]	((((((((((((((.((.(((((&)))))-))-))))))))))))))	GAAGAAGAAGAAGGCGAUAAGAA&UUCUU-UC-CUUUCUUCUUCUUC	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1131_c0_g1_557_TPlot.pdf
TRINITY_DN11324_c0_g1:244	si_s628	TRINITY_DN11324_c0_g1	232	253	244	-35.40	-25.00	0.706214689265537	4	1-6,253-248;8-14,246-240;15-21,238-232	7-7,247-247[SIL];x-x,239-239[BULt]	(((((((.(((((((.((((((&)))))).)))))))-)))))))	AAAUGUCGUACGAAAUGAUCGC&GCGAUCUUUUCGUA-GGCGUUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN11324_c0_g1_244_TPlot.pdf
TRINITY_DN11324_c0_g1:347	si_s308	TRINITY_DN11324_c0_g1	335	357	347	-32.80	-21.40	0.652439024390244	8.5	2-5,356-353;7-13,350-344;14-19,342-337	1-1,357-357[UP5];6-6,352-351[AILt];x-x,343-343[BULt];20-21,336-335[UP3]	..((((((.(((((((..((((.&.))))-.)))))))-))))))..	ACGAAGGGCCAGAAUUAAUCGCU&UGCGA-AAAUUCUG-UCCUUCUU	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN11324_c0_g1_347_TPlot.pdf
TRINITY_DN11324_c0_g1:348	si_s307	TRINITY_DN11324_c0_g1	336	358	348	-32.90	-21.40	0.650455927051672	9.5	3-6,356-353;8-14,350-344;15-20,342-337	1-2,358-357[UP5];7-7,352-351[AILt];x-x,343-343[BULt];21-21,336-336[UP3]	.((((((.(((((((..((((..&..))))-.)))))))-)))))).	CGAAGGGCCAGAAUUAAUCGCUG&UUGCGA-AAAUUCUG-UCCUUCU	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN11324_c0_g1_348_TPlot.pdf
TRINITY_DN11324_c0_g1:349	si_s306	TRINITY_DN11324_c0_g1	337	359	349	-32.30	-21.10	0.653250773993808	10.5	4-7,356-353;9-15,350-344;16-21,342-337	1-3,359-357[UP5];8-8,352-351[AILt];x-x,343-343[BULt]	((((((.(((((((..((((...&...))))-.)))))))-))))))	GAAGGGCCAGAAUUAAUCGCUGU&AUUGCGA-AAAUUCUG-UCCUUC	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN11324_c0_g1_349_TPlot.pdf
TRINITY_DN11324_c0_g1:485	si_a142	TRINITY_DN11324_c0_g1	474	494	485	-23.50	-15.60	0.663829787234043	10.5	4-8,491-487;10-19,485-476	1-3,494-492[UP5];9-9,486-486[SIL];20-21,475-474[UP3]	..((((((((((.(((((...&...))))).))))))))))..	AGAAGACAACAGAGAUUAUCC&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN11324_c0_g1_485_TPlot.pdf
TRINITY_DN11324_c0_g1:486	si_a141	TRINITY_DN11324_c0_g1	475	495	486	-23.80	-15.60	0.65546218487395	11.5	5-9,491-487;11-20,485-476	1-4,495-492[UP5];10-10,486-486[SIL];21-21,475-475[UP3]	.((((((((((.(((((....&....))))).)))))))))).	GAAGACAACAGAGAUUAUCCA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN11324_c0_g1_486_TPlot.pdf
TRINITY_DN11325_c0_g1:1825	si_s74	TRINITY_DN11325_c0_g1	1809	1834	1825	-25.00	-17.10	0.684	15.5	2-10,1833-1825;11-21,1819-1809	1-1,1834-1834[UP5];x-x,1824-1820[BULt]	(((((((((((.....(((((((((.&.)))))))))-----)))))))))))	GGAAGGAAAGGGUACAGAGAAAGUAC&CUAUUUUUUU-----UCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11325_c0_g1_1825_TPlot.pdf
TRINITY_DN11327_c0_g1:239	si_a787	TRINITY_DN11327_c0_g1	227	248	239	-26.30	-18.10	0.688212927756654	6.5	2-13,247-236;15-20,233-228	1-1,248-248[UP5];14-14,235-234[AILt];21-21,227-227[UP3]	.((((((..((((((((((((.&.))))))))))))-.)))))).	CGGAGAACAAGAAGAAUAGAGC&CUUCUAUUUUUCU-AUUUUCCA	4	0.999999998292486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN11327_c0_g1_239_TPlot.pdf
TRINITY_DN1132_c0_g1:680	si_a472	TRINITY_DN1132_c0_g1	669	691	680	-21.50	-14.06	0.653953488372093	12.5	2-9,690-683;13-21,677-669	1-1,691-691[UP5];10-12,682-678[AILt]	(((((((((.....((((((((.&.))))))))--...)))))))))	UGUAUAACAUUUUUAUUGCAUAA&AUAUGUAAU--UAUUGUUAUAUA	4	0.999999887220161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1132_c0_g1_680_TPlot.pdf
TRINITY_DN11336_c0_g2:259	si_s361	TRINITY_DN11336_c0_g2	248	268	259	-32.70	-21.40	0.654434250764526	7.5	3-14,266-255;16-17,253-252;19-21,250-248	1-2,268-267[UP5];15-15,254-254[SIL];18-18,251-251[SIL]	(((.((.((((((((((((..&..)))))))))))).)).)))	AGUAAUGGGUUCGAUCUGUGC&AAAUAGAUUGAACCGAUCGCU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s361_TRINITY_DN11336_c0_g2_259_TPlot.pdf
TRINITY_DN11336_c0_g2:263	si_s357	TRINITY_DN11336_c0_g2	252	273	263	-28.70	-19.30	0.672473867595819	11.5	4-5,270-269;7-18,266-255;20-21,253-252	1-3,273-271[UP5];6-6,268-267[AILt];19-19,254-254[SIL]	((.((((((((((((..((...&...))-.)))))))))))).))	AUGGGUUCGAUCUGUGCUCGGU&AAAGA-AAUAGAUUGAACCGAU	1	0.0154030798505176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN11336_c0_g2_263_TPlot.pdf
TRINITY_DN1133_c0_g1:1460	si_a885	TRINITY_DN1133_c0_g1	1449	1468	1460	-25.60	-17.90	0.69921875	6	2-5,1467-1464;7-18,1463-1452	1-1,1468-1468[UP5];6-6,x-x[BULq];19-21,1451-1449[UP3]	...((((((((((((-((((.&.)))).))))))))))))...	CAGAUUACUAUAUUG-UUGCU&UGCAAUCAAUAUAGUAAUAAU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN1133_c0_g1_1460_TPlot.pdf
TRINITY_DN1133_c0_g1:1461	si_a884	TRINITY_DN1133_c0_g1	1450	1469	1461	-25.60	-17.90	0.69921875	7	3-6,1467-1464;8-19,1463-1452	1-2,1469-1468[UP5];7-7,x-x[BULq];20-21,1451-1450[UP3]	..((((((((((((-((((..&..)))).))))))))))))..	AGAUUACUAUAUUG-UUGCUG&UUGCAAUCAAUAUAGUAAUAA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN1133_c0_g1_1461_TPlot.pdf
TRINITY_DN11347_c0_g1:481	si_s532	TRINITY_DN11347_c0_g1	470	491	481	-28.70	-20.42	0.711498257839721	13	3-7,489-485;11-20,480-471	1-2,491-490[UP5];8-10,484-481[AILt];21-21,470-470[UP3]	.((((((((((....(((((..&..)))))-...)))))))))).	GGAUCGGAUCAUUAUAUGGUAG&AAAUCAU-UUUUGAUCCGAUCA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN11347_c0_g1_481_TPlot.pdf
TRINITY_DN1134_c0_g1:4529	si_s22	TRINITY_DN1134_c0_g1	4518	4538	4529	-26.70	-18.90	0.707865168539326	11	3-16,4536-4523	1-2,4538-4537[UP5];17-21,4522-4518[UP3]	.....((((((((((((((..&..)))))))))))))).....	GUUGCGUUGCAGUCAGUGUCG&CUAUAUUGAUUGCAACUAAAU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN1134_c0_g1_4529_TPlot.pdf
TRINITY_DN1134_c0_g1:4530	si_s21	TRINITY_DN1134_c0_g1	4519	4539	4530	-27.40	-18.90	0.68978102189781	12	4-17,4536-4523	1-3,4539-4537[UP5];18-21,4522-4519[UP3]	....((((((((((((((...&...))))))))))))))....	UUGCGUUGCAGUCAGUGUCGC&ACUAUAUUGAUUGCAACUAAA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN1134_c0_g1_4530_TPlot.pdf
TRINITY_DN1134_c0_g1:6184	si_s437	TRINITY_DN1134_c0_g1	6173	6193	6184	-19.70	-13.40	0.680203045685279	6.5	1-4,6193-6190;6-17,6188-6177	5-5,6189-6189[SIL];18-21,6176-6173[UP3]	....((((((((((((.((((&)))).))))))))))))....	GAUAAUAUGAUAUGUAUUUAU&AUAAUUACAUAUUAUAUAUAA	2	0.995260596514365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN1134_c0_g1_6184_TPlot.pdf
TRINITY_DN1134_c0_g1:6185	si_s436	TRINITY_DN1134_c0_g1	6174	6194	6185	-19.60	-14.60	0.744897959183673	5.5	1-5,6194-6190;7-18,6188-6177	6-6,6189-6189[SIL];19-21,6176-6174[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AUAAUAUGAUAUGUAUUUAUU&AAUAAUUACAUAUUAUAUAUA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN1134_c0_g1_6185_TPlot.pdf
TRINITY_DN1134_c0_g1:6501	si_s35	TRINITY_DN1134_c0_g1	6490	6510	6501	-24.00	-15.90	0.6625	6.5	1-7,6510-6504;10-21,6501-6490	8-9,6503-6502[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	CUAGUUGUUAGAUUUUUAGUU&AACUAAAUCUUUAAUAAUUGG	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN1134_c0_g1_6501_TPlot.pdf
TRINITY_DN1134_c0_g2:3645	si_s675	TRINITY_DN1134_c0_g2	3634	3654	3645	-27.50	-19.90	0.723636363636364	7	4-16,3651-3639;18-21,3637-3634	1-3,3654-3652[UP5];17-17,3638-3638[SIL]	((((.(((((((((((((...&...))))))))))))).))))	AACUGAUGUUUCUAUAGUAAA&UUGAUUAUAGAAACAUGAGUU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN1134_c0_g2_3645_TPlot.pdf
TRINITY_DN1134_c0_g2:6904	si_s602	TRINITY_DN1134_c0_g2	6893	6918	6904	-28.10	-18.30	0.651245551601424	12	1-5,6918-6914;6-9,6912-6909;10-19,6904-6895	x-x,6913-6913[BULt];x-x,6908-6905[BULt];20-21,6894-6893[UP3]	..((((((((((....((((.(((((&)))))-))))----))))))))))..	UGUAAAAAAGAUUUGUUCGCGUUGGA&UCCAA-GCGA----AUCUUUUUUAAA	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN1134_c0_g2_6904_TPlot.pdf
TRINITY_DN1134_c28_g1:590	si_a497	TRINITY_DN1134_c28_g1	579	599	590	-32.00	-20.90	0.653125	8	1-12,599-588;14-18,586-582	13-13,587-587[SIL];19-21,581-579[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UAUGAGGGAGGAGAACGGCAU&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1134_c28_g1_590_TPlot.pdf
TRINITY_DN1134_c28_g1:592	si_a495	TRINITY_DN1134_c28_g1	581	601	592	-31.90	-20.90	0.655172413793103	8.5	3-14,599-588;16-20,586-582	1-2,601-600[UP5];15-15,587-587[SIL];21-21,581-581[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	UGAGGGAGGAGAACGGCAUUG&AUAUGUCGUUUUUCGUCUUCC	4	0.999999999995143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1134_c28_g1_592_TPlot.pdf
TRINITY_DN1134_c28_g1:668	si_a758	TRINITY_DN1134_c28_g1	651	677	668	-34.00	-22.50	0.661764705882353	10	1-11,677-667;12-13,665-664;14-18,658-654;20-21,652-651	x-x,666-666[BULt];x-x,663-659[BULt];19-19,653-653[SIL]	((.(((((.....((.(((((((((((&)))))))))))-))-----))))).))	CAUUCAAGCCUACGAUCCCAAAGGGGG&CCUCCUUUGGG-UU-----UUUGAUUG	3	0.999999778889403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1134_c28_g1_668_TPlot.pdf
TRINITY_DN1134_c28_g1:794	si_s89	TRINITY_DN1134_c28_g1	781	803	794	-35.30	-24.60	0.696883852691218	6.5	1-14,803-790;15-17,787-785;20-20,782-782	x-x,789-788[BULt];18-19,784-783[SIL];21-21,781-781[UP3]	.(..(((..((((((((((((((&))))))))))))))--)))..).	GGUUGCGCCGAGGAGAAGAAAGG&CCUUUCUUCUUCUU--CGCUUCG	4	0.999999967983427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1134_c28_g1_794_TPlot.pdf
TRINITY_DN1134_c28_g1:796	si_s87	TRINITY_DN1134_c28_g1	783	805	796	-32.90	-23.60	0.717325227963526	8	3-16,803-790;17-19,787-785	1-2,805-804[UP5];x-x,789-788[BULt];20-21,784-783[UP3]	..(((..((((((((((((((..&..))))))))))))))--)))..	UUGCGCCGAGGAGAAGAAAGGUU&UUCCUUUCUUCUUCUU--CGCUU	3	0.999999952528498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1134_c28_g1_796_TPlot.pdf
TRINITY_DN1134_c28_g1:797	si_s86	TRINITY_DN1134_c28_g1	784	806	797	-32.90	-23.60	0.717325227963526	9	4-17,803-790;18-20,787-785	1-3,806-804[UP5];x-x,789-788[BULt];21-21,784-784[UP3]	.(((..((((((((((((((...&...))))))))))))))--))).	UGCGCCGAGGAGAAGAAAGGUUA&UUUCCUUUCUUCUUCUU--CGCU	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1134_c28_g1_797_TPlot.pdf
TRINITY_DN1134_c28_g1:798	si_s85	TRINITY_DN1134_c28_g1	785	807	798	-33.80	-23.20	0.686390532544379	10	5-18,803-790;19-21,787-785	1-4,807-804[UP5];x-x,789-788[BULt]	(((..((((((((((((((....&....))))))))))))))--)))	GCGCCGAGGAGAAGAAAGGUUAC&CUUUCCUUUCUUCUUCUU--CGC	3	0.999999999974538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1134_c28_g1_798_TPlot.pdf
TRINITY_DN1134_c28_g1:799	si_s84	TRINITY_DN1134_c28_g1	789	815	799	-32.30	-21.30	0.659442724458204	16.5	1-5,815-811;6-15,803-794;17-21,793-789	x-x,810-804[BULt];16-16,x-x[BULq]	(((((-((((((((((.......(((((&)))))-------)))))))))).)))))	CGAGG-AGAAGAAAGGUUACCUAGAAGA&UCUUU-------CCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1134_c28_g1_799_TPlot.pdf
TRINITY_DN1134_c28_g1:800	si_s83	TRINITY_DN1134_c28_g1	789	813	800	-30.90	-21.06	0.681553398058252	14	1-4,813-810;7-20,803-790	5-6,809-804[AILt];21-21,789-789[UP3]	.((((((((((((((......((((&))))----..)))))))))))))).	CGAGGAGAAGAAAGGUUACCUAGAA&UUCU----UUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1134_c28_g1_800_TPlot.pdf
TRINITY_DN1134_c28_g1:802	si_s81	TRINITY_DN1134_c28_g1	791	815	802	-28.90	-21.56	0.746020761245675	13.5	1-6,815-810;9-21,803-791	7-8,809-804[AILt]	(((((((((((((......((((((&))))))----..)))))))))))))	AGGAGAAGAAAGGUUACCUAGAAGA&UUUUCU----UUCCUUUCUUCUUCU	2	0.99999591753827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1134_c28_g1_802_TPlot.pdf
TRINITY_DN1134_c28_g1:803	si_s80	TRINITY_DN1134_c28_g1	792	816	803	-28.20	-20.36	0.721985815602837	14.5	2-7,815-810;10-21,803-792	1-1,816-816[UP5];8-9,809-804[AILt]	((((((((((((......((((((.&.))))))----..))))))))))))	GGAGAAGAAAGGUUACCUAGAAGAC&UUUUUCU----UUCCUUUCUUCUUC	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1134_c28_g1_803_TPlot.pdf
TRINITY_DN1134_c28_g1:804	si_s79	TRINITY_DN1134_c28_g1	793	817	804	-26.20	-18.06	0.689312977099237	16.5	3-8,815-810;11-21,803-793	1-2,817-816[UP5];9-10,809-804[AILt]	(((((((((((......((((((..&..))))))----..)))))))))))	GAGAAGAAAGGUUACCUAGAAGACA&UUUUUUCU----UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1134_c28_g1_804_TPlot.pdf
TRINITY_DN1134_c2_g1:822	si_a838	TRINITY_DN1134_c2_g1	811	831	822	-26.50	-17.70	0.667924528301887	9.5	4-6,828-826;8-20,824-812	1-3,831-829[UP5];7-7,825-825[SIL];21-21,811-811[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	UGUUGGCAACUUUUUUUUGAU&AAAAAAUAGAAGUUGCUAACU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN1134_c2_g1_822_TPlot.pdf
TRINITY_DN1134_c4_g1:471	si_a474	TRINITY_DN1134_c4_g1	460	481	471	-23.60	-15.90	0.673728813559322	10.5	1-7,481-475;9-20,472-461	8-8,474-473[AILt];21-21,460-460[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	ACUGUGUGACAGUUUGUUAUGU&AUGUAAU-UAUUGUUAUAUAGA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN1134_c4_g1_471_TPlot.pdf
TRINITY_DN1134_c4_g1:472	si_a473	TRINITY_DN1134_c4_g1	461	482	472	-23.00	-17.20	0.747826086956522	9.5	1-8,482-475;10-21,472-461	9-9,474-473[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	CUGUGUGACAGUUUGUUAUGUA&UAUGUAAU-UAUUGUUAUAUAG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN1134_c4_g1_472_TPlot.pdf
TRINITY_DN1134_c4_g1:473	si_s428	TRINITY_DN1134_c4_g1	461	482	473	-21.50	-14.02	0.652093023255814	10	1-10,482-473;14-20,468-462	11-13,472-469[AILt];21-21,461-461[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	CUGUGUGACAGUUUGUUAUGUA&UAUAUAACAA-UAAUUACAUAU	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN1134_c4_g1_473_TPlot.pdf
TRINITY_DN11350_c0_g1:169	si_a142	TRINITY_DN11350_c0_g1	158	177	169	-23.50	-15.50	0.659574468085106	11.5	2-4,176-174;7-19,172-160	1-1,177-177[UP5];5-6,173-173[AILq];20-21,159-158[UP3]	..(((((((((((((.-(((.&.)))..)))))))))))))..	CAAGGACAGCGACGGA-GAUG&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN11350_c0_g1_169_TPlot.pdf
TRINITY_DN11350_c0_g1:170	si_a141	TRINITY_DN11350_c0_g1	159	178	170	-23.80	-15.50	0.651260504201681	12.5	3-5,176-174;8-20,172-160	1-2,178-177[UP5];6-7,173-173[AILq];21-21,159-159[UP3]	.(((((((((((((.-(((..&..)))..))))))))))))).	AAGGACAGCGACGGA-GAUGG&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN11350_c0_g1_170_TPlot.pdf
TRINITY_DN11350_c0_g1:177	si_s798	TRINITY_DN11350_c0_g1	166	186	177	-29.30	-19.80	0.675767918088737	9	1-3,186-184;5-7,182-180;9-19,178-168	4-4,183-183[SIL];8-8,179-179[SIL];20-21,167-166[UP3]	..(((((((((((.(((.(((&))).))).)))))))))))..	GCGACGGAGAUGGUAUAGGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN11350_c0_g1_177_TPlot.pdf
TRINITY_DN11350_c0_g1:394	si_a705	TRINITY_DN11350_c0_g1	383	405	394	-30.50	-21.60	0.708196721311475	8.5	2-9,404-397;10-20,394-384	1-1,405-405[UP5];x-x,396-395[BULt];21-21,383-383[UP3]	.(((((((((((..((((((((.&.))))))))--))))))))))).	AGUUAUUUUGGAUUAUGUGCCGA&CUGGUACAU--UCCAAAAUAAUC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN11350_c0_g1_394_TPlot.pdf
TRINITY_DN11350_c0_g1:565	si_a233	TRINITY_DN11350_c0_g1	554	574	565	-28.90	-18.80	0.650519031141869	7.5	1-7,574-568;10-17,565-558;19-21,556-554	8-9,567-566[SIL];18-18,557-557[SIL]	(((.((((((((..(((((((&)))))))..)))))))).)))	GGAAUGGGUUGAGGAUAGGAA&UUUCUAUAAUCAAUUCGAUCC	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN11350_c0_g1_565_TPlot.pdf
TRINITY_DN11357_c0_g1:3865	si_a641	TRINITY_DN11357_c0_g1	3854	3874	3865	-23.60	-16.60	0.703389830508475	6	2-11,3873-3864;14-20,3861-3855	1-1,3874-3874[UP5];12-13,3863-3862[SIL];21-21,3854-3854[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	AGGUAUGUCUCUCAAAAAAAA&AUUUUUUUGAGUAAUAUAUCG	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN11357_c0_g1_3865_TPlot.pdf
TRINITY_DN11357_c0_g1:5110	si_a632	TRINITY_DN11357_c0_g1	5099	5119	5110	-26.10	-18.80	0.720306513409962	11.5	3-5,5117-5115;7-8,5113-5112;10-21,5110-5099	1-2,5119-5118[UP5];6-6,5114-5114[SIL];9-9,5111-5111[SIL]	((((((((((((.((.(((..&..))).)).))))))))))))	GCUCAGAGAGGUGGAGGUAUU&AUUAUGUCGAUUUUUUUGAGU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN11357_c0_g1_5110_TPlot.pdf
TRINITY_DN11357_c0_g1:5884	si_s524	TRINITY_DN11357_c0_g1	5873	5893	5884	-23.90	-16.30	0.682008368200837	8	4-14,5890-5880;16-21,5878-5873	1-3,5893-5891[UP5];15-15,5879-5879[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UCGAGACUGAUUUUGAAUGUG&UUAAUUCGAAAUCAUUUUUGA	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN11357_c0_g1_5884_TPlot.pdf
TRINITY_DN11357_c0_g3:169	si_s69	TRINITY_DN11357_c0_g3	158	177	169	-23.40	-15.70	0.670940170940171	7	1-4,177-174;6-8,173-171;10-21,169-158	5-5,x-x[BULq];9-9,170-170[SIL]	((((((((((((.(((-((((&)))).))).))))))))))))	GGAAGAAGAAAAUUGG-GGUU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11357_c0_g3_169_TPlot.pdf
TRINITY_DN1135_c0_g3:1131	si_a404	TRINITY_DN1135_c0_g3	1120	1141	1131	-21.70	-14.30	0.658986175115207	7.5	1-9,1141-1133;10-20,1131-1121	x-x,1132-1132[BULt];21-21,1120-1120[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	GGAAUAUAAAUAUAGAUGAUUC&GAAUUGUUU-UGUUUAUAUUUA	2	0.999999999994141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1135_c0_g3_1131_TPlot.pdf
TRINITY_DN1135_c0_g3:1265	si_s437	TRINITY_DN1135_c0_g3	1254	1274	1265	-19.70	-13.30	0.6751269035533	6	1-11,1274-1264;13-17,1262-1258	12-12,1263-1263[SIL];18-21,1257-1254[UP3]	....(((((.(((((((((((&))))))))))).)))))....	AAAAAUAUAUUAUGUAAUUAU&AUAAUUACAUAUUAUAUAUAA	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN1135_c0_g3_1265_TPlot.pdf
TRINITY_DN1135_c0_g3:1268	si_s434	TRINITY_DN1135_c0_g3	1257	1277	1268	-21.50	-14.30	0.665116279069767	5	3-14,1275-1264;16-20,1262-1258	1-2,1277-1276[UP5];15-15,1263-1263[SIL];21-21,1257-1257[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AAUAUAUUAUGUAAUUAUUCA&ACAAUAAUUACAUAUUAUAUA	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN1135_c0_g3_1268_TPlot.pdf
TRINITY_DN1135_c0_g3:208	si_a855	TRINITY_DN1135_c0_g3	196	217	208	-24.70	-16.30	0.659919028340081	7	3-5,215-213;7-15,211-203;16-21,201-196	1-2,217-216[UP5];6-6,212-212[SIL];x-x,202-202[BULt]	((((((.(((((((((.(((..&..))).)))))))))-))))))	UUGAUACGUUGGAUUUGAAGAA&AACUUGAAAUCCAAU-UAUUAA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN1135_c0_g3_208_TPlot.pdf
TRINITY_DN1135_c0_g3:215	si_a848	TRINITY_DN1135_c0_g3	204	226	215	-31.30	-20.60	0.65814696485623	10	2-8,225-219;10-12,215-213;14-21,211-204	1-1,226-226[UP5];9-9,218-216[AILt];13-13,212-212[SIL]	((((((((.(((...(((((((.&.)))))))--.))).))))))))	UUGGAUUUGAAGAAAUGGCAGCA&AGUUGCUA--ACUUGAAAUCCAA	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN1135_c0_g3_215_TPlot.pdf
TRINITY_DN11366_c0_g1:422	si_a407	TRINITY_DN11366_c0_g1	411	431	422	-19.80	-14.80	0.747474747474748	9.5	3-17,429-415	1-2,431-430[UP5];18-21,414-411[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGCAGAUAUAGACAAAGCCG&UUGUUUUGUUUAUAUUUAAAU	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN11366_c0_g1_422_TPlot.pdf
TRINITY_DN11366_c0_g1:425	si_a404	TRINITY_DN11366_c0_g1	414	434	425	-21.70	-14.80	0.682027649769585	12	6-20,429-415	1-5,434-430[UP5];21-21,414-414[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGAUAUAGACAAAGCCGUAC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN11366_c0_g1_425_TPlot.pdf
TRINITY_DN11373_c0_g2:1373	si_a484	TRINITY_DN11373_c0_g2	1363	1382	1373	-27.30	-19.60	0.717948717948718	5.5	2-13,1381-1370;15-21,1369-1363	1-1,1382-1382[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	GACGGCA-GUUUUAUAUGACU&UGUUAUAUAGAAUAUGUCGUU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN11373_c0_g2_1373_TPlot.pdf
TRINITY_DN11373_c0_g2:1374	si_a483	TRINITY_DN11373_c0_g2	1364	1383	1374	-27.40	-18.30	0.667883211678832	7	3-14,1381-1370;16-21,1369-1364	1-2,1383-1382[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	ACGGCA-GUUUUAUAUGACUU&UUGUUAUAUAGAAUAUGUCGU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN11373_c0_g2_1374_TPlot.pdf
TRINITY_DN11373_c0_g2:262	si_a21	TRINITY_DN11373_c0_g2	251	271	262	-24.30	-16.86	0.693827160493827	11.5	1-7,271-265;12-20,260-252	8-11,264-261[SIL];21-21,251-251[UP3]	.(((((((((....(((((((&)))))))....))))))))).	CUAGAACUGAUUUCGAAUGGG&CCUAUUUAUUUUUAGUUCUAA	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN11373_c0_g2_262_TPlot.pdf
TRINITY_DN11376_c1_g1:192	si_a408	TRINITY_DN11376_c1_g1	181	201	192	-20.10	-13.90	0.691542288557214	10.5	1-9,201-193;11-18,191-184	10-10,192-192[SIL];19-21,183-181[UP3]	...((((((((.(((((((((&))))))))).))))))))...	AAAUUGAAUGUUGGCGAGACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999945240273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN11376_c1_g1_192_TPlot.pdf
TRINITY_DN11377_c1_g1:315	si_s79	TRINITY_DN11377_c1_g1	300	324	315	-26.20	-17.10	0.652671755725191	15.5	1-11,324-314;12-19,309-302	x-x,313-310[BULt];20-21,301-300[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	CCGGAGGAGGCUGAGAAGGAGGAGA&UUUUUUCUUUC----CUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11377_c1_g1_315_TPlot.pdf
TRINITY_DN1137_c0_g1:448	si_a425	TRINITY_DN1137_c0_g1	446	457	448	-30.80	-20.80	0.675324675324675	2	11-21,456-446	10-10,457-457[SIL]	(((((((((((.&.)))))))))))	CCAACGGGUCCC&AAUAAAUAUAGG	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN1137_c0_g1_448_TPlot.pdf
TRINITY_DN1137_c0_g1:453	si_a429	TRINITY_DN1137_c0_g1	442	462	453	-32.00	-20.80	0.65	16	7-17,456-446	1-6,462-457[UP5];18-21,445-442[UP3]	....(((((((((((......&......)))))))))))....	AUUACCAACGGGUCCCAAGAU&AAUAUAGGAUCCGUUGGAUAU	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN1137_c0_g1_453_TPlot.pdf
TRINITY_DN1137_c0_g1:454	si_a428	TRINITY_DN1137_c0_g1	443	463	454	-31.80	-20.80	0.654088050314465	17	8-18,456-446	1-7,463-457[UP5];19-21,445-443[UP3]	...(((((((((((.......&.......)))))))))))...	UUACCAACGGGUCCCAAGAUG&AAAUAUAGGAUCCGUUGGAUA	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN1137_c0_g1_454_TPlot.pdf
TRINITY_DN1137_c0_g1:455	si_a427	TRINITY_DN1137_c0_g1	444	464	455	-31.80	-20.80	0.654088050314465	18	9-19,456-446	1-8,464-457[UP5];20-21,445-444[UP3]	..(((((((((((........&........)))))))))))..	UACCAACGGGUCCCAAGAUGG&UAAAUAUAGGAUCCGUUGGAU	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN1137_c0_g1_455_TPlot.pdf
TRINITY_DN1137_c0_g1:456	si_a426	TRINITY_DN1137_c0_g1	445	465	456	-31.80	-20.80	0.654088050314465	18.5	10-20,456-446	1-9,465-457[UP5];21-21,445-445[UP3]	.(((((((((((.........&.........))))))))))).	ACCAACGGGUCCCAAGAUGGA&AUAAAUAUAGGAUCCGUUGGA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN1137_c0_g1_456_TPlot.pdf
TRINITY_DN1137_c0_g1:662	si_s79	TRINITY_DN1137_c0_g1	650	671	662	-26.20	-20.40	0.778625954198473	8.5	2-11,670-661;12-20,659-651	1-1,671-671[UP5];x-x,660-660[BULt];21-21,650-650[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	CAGAAGAAGGUGGAGGGAGAAU&UUUUUUCUUUC-CUUUCUUCUU	3	0.99999994418289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1137_c0_g1_662_TPlot.pdf
TRINITY_DN1137_c0_g1:666	si_s895	TRINITY_DN1137_c0_g1	655	677	666	-31.10	-20.90	0.672025723472669	9	2-6,676-672;7-16,669-660;18-21,658-655	1-1,677-677[UP5];x-x,671-670[BULt];17-17,659-659[SIL]	((((.((((((((((..(((((.&.)))))--)))))))))).))))	GAAGGUGGAGGGAGAAUGCCUAA&AUAGGC--UUUCUCUUCAAUUUC	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN1137_c0_g1_666_TPlot.pdf
TRINITY_DN1137_c0_g1:922	si_s693	TRINITY_DN1137_c0_g1	911	931	922	-23.90	-16.80	0.702928870292887	10.5	1-16,931-916	17-21,915-911[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGCUCGGUUGGCUGAUUGGAC&GUUUAAUUAGUCGAUUUAUUA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN1137_c0_g1_922_TPlot.pdf
TRINITY_DN1137_c0_g1:923	si_s692	TRINITY_DN1137_c0_g1	912	932	923	-24.20	-17.00	0.702479338842975	10.5	2-17,931-916	1-1,932-932[UP5];18-21,915-912[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCUCGGUUGGCUGAUUGGACC&AGUUUAAUUAGUCGAUUUAUU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN1137_c0_g1_923_TPlot.pdf
TRINITY_DN11380_c0_g1:1084	si_a325	TRINITY_DN11380_c0_g1	1073	1094	1084	-25.90	-17.60	0.67953667953668	6	1-5,1094-1090;6-17,1088-1077	x-x,1089-1089[BULt];18-21,1076-1073[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	UGCUGGAAUAAAAAAAUUCAUG&CAUGA-UUUUUUUAUUCCUUGU	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN11380_c0_g1_1084_TPlot.pdf
TRINITY_DN11380_c0_g1:1086	si_a323	TRINITY_DN11380_c0_g1	1075	1096	1086	-26.80	-18.00	0.671641791044776	7	3-7,1094-1090;8-19,1088-1077	1-2,1096-1095[UP5];x-x,1089-1089[BULt];20-21,1076-1075[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	CUGGAAUAAAAAAAUUCAUGAU&UCCAUGA-UUUUUUUAUUCCUU	2	0.999708299024427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN11380_c0_g1_1086_TPlot.pdf
TRINITY_DN11380_c0_g1:1087	si_a322	TRINITY_DN11380_c0_g1	1076	1097	1087	-27.00	-18.00	0.666666666666667	8	4-8,1094-1090;9-20,1088-1077	1-3,1097-1095[UP5];x-x,1089-1089[BULt];21-21,1076-1076[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	UGGAAUAAAAAAAUUCAUGAUU&AUCCAUGA-UUUUUUUAUUCCU	2	0.999708299024427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN11380_c0_g1_1087_TPlot.pdf
TRINITY_DN11380_c0_g1:1088	si_a321	TRINITY_DN11380_c0_g1	1077	1098	1088	-26.70	-17.60	0.659176029962547	9	5-9,1094-1090;10-21,1088-1077	1-4,1098-1095[UP5];x-x,1089-1089[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	GGAAUAAAAAAAUUCAUGAUUA&UAUCCAUGA-UUUUUUUAUUCC	2	0.99927635706567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN11380_c0_g1_1088_TPlot.pdf
TRINITY_DN1138_c0_g1:1671	si_s12	TRINITY_DN1138_c0_g1	1657	1680	1671	-22.80	-16.02	0.702631578947368	8	1-13,1680-1668;16-21,1662-1657	14-15,1667-1663[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	AAUCAAGAAAUUAGUAAUGAUGGG&CUUAUUAUUACUA---UAUUGAUU	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN1138_c0_g1_1671_TPlot.pdf
TRINITY_DN1138_c0_g1:1674	si_s9	TRINITY_DN1138_c0_g1	1663	1683	1674	-22.90	-15.90	0.694323144104804	9	2-16,1682-1668	1-1,1683-1683[UP5];17-21,1667-1663[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAAAUUAGUAAUGAUGGGUAU&UUACUUAUUAUUACUAUAUUG	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN1138_c0_g1_1674_TPlot.pdf
TRINITY_DN1138_c0_g1:2142	si_a404	TRINITY_DN1138_c0_g1	2131	2151	2142	-21.70	-14.20	0.654377880184332	9	4-19,2148-2133	1-3,2151-2149[UP5];20-21,2132-2131[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACAAUAUAAACAGAAUAAAAA&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1138_c0_g1_2142_TPlot.pdf
TRINITY_DN1138_c0_g1:2427	si_a899	TRINITY_DN1138_c0_g1	2416	2436	2427	-18.70	-12.80	0.684491978609626	9	5-21,2432-2416	1-4,2436-2433[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUUAUAUUAUUUGUUUCAA&UAAUAAUAAGUAAUAUAAAAA	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1138_c0_g1_2427_TPlot.pdf
TRINITY_DN11396_c0_g1:2514	si_s86	TRINITY_DN11396_c0_g1	2497	2524	2514	-32.90	-22.20	0.674772036474164	13	3-7,2522-2518;8-16,2516-2508;17-21,2501-2497	1-2,2524-2523[UP5];x-x,2517-2517[BULt];x-x,2507-2502[BULt]	(((((......(((((((((.(((((..&..)))))-)))))))))------)))))	AGCGAUGAUGAGGAGGAAGAGGAGGAUA&UUUCCUU-UCUUCUUCU------UCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN11396_c0_g1_2514_TPlot.pdf
TRINITY_DN11397_c0_g1:193	si_a351	TRINITY_DN11397_c0_g1	182	202	193	-20.50	-14.30	0.697560975609756	6.5	1-5,202-198;8-14,195-189;16-21,187-182	6-7,197-196[SIL];15-15,188-188[SIL]	((((((.(((((((..(((((&)))))..))))))).))))))	GUCAAAUUAGGAUUUUUAUUU&AAAUAUUAAUUCUAUUUUGAU	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN11397_c0_g1_193_TPlot.pdf
TRINITY_DN1139_c0_g1:523	si_s32	TRINITY_DN1139_c0_g1	512	531	523	-24.80	-19.40	0.782258064516129	5.5	1-8,531-524;11-21,522-512	9-10,523-523[AILq]	(((((((((((.-((((((((&))))))))..)))))))))))	AUUGUUAAAGAA-UGGUUGCA&UGCAACUAAAUCUUUAAUAAU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN1139_c0_g1_523_TPlot.pdf
TRINITY_DN113_c0_g1:1637	si_a398	TRINITY_DN113_c0_g1	1626	1646	1637	-22.40	-15.60	0.696428571428572	7.5	3-17,1644-1630	1-2,1646-1645[UP5];18-21,1629-1626[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUCUAAAACAAUUCUAUAAA&AAUAUAGAAUUGUUUUGUUUA	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN113_c0_g1_1637_TPlot.pdf
TRINITY_DN113_c0_g1:1849	si_a463	TRINITY_DN113_c0_g1	1838	1858	1849	-19.70	-16.20	0.822335025380711	4	1-15,1858-1844;17-21,1842-1838	16-16,1843-1843[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GUGGUGACAUGUUAUAUAUAG&UUAUAUAUAAUAUGUAAUUAU	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN113_c0_g1_1849_TPlot.pdf
TRINITY_DN113_c0_g1:1850	si_a462	TRINITY_DN113_c0_g1	1839	1859	1850	-21.20	-15.10	0.712264150943396	5	2-16,1858-1844;18-21,1842-1839	1-1,1859-1859[UP5];17-17,1843-1843[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	UGGUGACAUGUUAUAUAUAGG&GUUAUAUAUAAUAUGUAAUUA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN113_c0_g1_1850_TPlot.pdf
TRINITY_DN113_c0_g1:1851	si_a461	TRINITY_DN113_c0_g1	1840	1860	1851	-21.50	-15.10	0.702325581395349	7.5	1-1,1860-1860;3-17,1858-1844	2-2,1859-1859[SIL];18-21,1843-1840[UP3]	....(((((((((((((((.(&).)))))))))))))))....	GGUGACAUGUUAUAUAUAGGA&UGUUAUAUAUAAUAUGUAAUU	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN113_c0_g1_1851_TPlot.pdf
TRINITY_DN113_c0_g1:1852	si_a460	TRINITY_DN113_c0_g1	1841	1861	1852	-21.60	-15.30	0.708333333333333	7.5	2-2,1860-1860;4-18,1858-1844	1-1,1861-1861[UP5];3-3,1859-1859[SIL];19-21,1843-1841[UP3]	...(((((((((((((((.(.&.).)))))))))))))))...	GUGACAUGUUAUAUAUAGGAU&UUGUUAUAUAUAAUAUGUAAU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN113_c0_g1_1852_TPlot.pdf
TRINITY_DN113_c0_g1:1855	si_a457	TRINITY_DN113_c0_g1	1844	1866	1855	-23.50	-15.30	0.651063829787234	10.5	3-8,1864-1859;9-21,1856-1844	1-2,1866-1865[UP5];x-x,1858-1857[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	ACAUGUUAUAUAUAGGAUGACUC&UUGUUGUU--AUAUAUAAUAUGU	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN113_c0_g1_1855_TPlot.pdf
TRINITY_DN11403_c0_g1:1021	si_a792	TRINITY_DN11403_c0_g1	1006	1030	1021	-27.60	-23.60	0.855072463768116	10.5	1-12,1030-1019;13-21,1014-1006	x-x,1018-1015[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	CGGAUUGGGGACUGAAUAGAAAGAU&AUUUUUCUAUUU----UCCAAUCCG	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN11403_c0_g1_1021_TPlot.pdf
TRINITY_DN11409_c2_g1:1404	si_s763	TRINITY_DN11409_c2_g1	1394	1413	1404	-26.50	-17.30	0.652830188679245	8	2-10,1412-1404;13-18,1402-1397	1-1,1413-1413[UP5];11-12,1403-1403[AILq];19-21,1396-1394[UP3]	...((((((.-(((((((((.&.)))))))))..))))))...	UAUGUAAUUU-UCGUUGUUGG&ACAACAACGAUUAAUUACUAU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s763_TRINITY_DN11409_c2_g1_1404_TPlot.pdf
TRINITY_DN11409_c2_g1:1478	si_s74	TRINITY_DN11409_c2_g1	1467	1487	1478	-25.00	-17.00	0.68	6.5	2-8,1486-1480;10-20,1478-1468	1-1,1487-1487[UP5];9-9,1479-1479[SIL];21-21,1467-1467[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	AGGAGGAAGGAGUAAAAAUAU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11409_c2_g1_1478_TPlot.pdf
TRINITY_DN1141_c0_g1:693	si_a543	TRINITY_DN1141_c0_g1	680	702	693	-28.70	-19.78	0.689198606271777	7	2-13,701-690;16-21,685-680	1-1,702-702[UP5];14-15,689-686[AILt]	((((((....((((((((((((.&.))))))))))))--..))))))	AAAGAAUCUGAGGUUGAACUGAA&AUCGGUUCAAUCU--AUUUCUUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN1141_c0_g1_693_TPlot.pdf
TRINITY_DN11426_c0_g1:1263	si_a324	TRINITY_DN11426_c0_g1	1253	1272	1263	-27.50	-17.90	0.650909090909091	6	1-4,1272-1269;6-13,1267-1260;15-20,1259-1254	5-5,1268-1268[SIL];14-14,x-x[BULq];21-21,1253-1253[UP3]	.((((((-((((((((.((((&)))).)))))))).)))))).	GAAGGAA-AAAGAAAUGGUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.99999987751274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN11426_c0_g1_1263_TPlot.pdf
TRINITY_DN11426_c0_g1:2356	si_a636	TRINITY_DN11426_c0_g1	2345	2365	2356	-26.30	-18.50	0.703422053231939	8.5	1-17,2365-2349	18-21,2348-2345[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCAAAUUCAAGAAGAUUGGCA&UGUCGAUUUUUUUGAGUAAUA	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN11426_c0_g1_2356_TPlot.pdf
TRINITY_DN11426_c0_g1:3220	si_a763	TRINITY_DN11426_c0_g1	3209	3229	3220	-28.80	-19.10	0.663194444444445	7.5	2-18,3228-3212;20-20,3210-3210	1-1,3229-3229[UP5];19-19,3211-3211[SIL];21-21,3209-3209[UP3]	.(.(((((((((((((((((.&.))))))))))))))))).).	AGUGUUGAUCGAAGACCUAAC&UUUGGGUUUUUGAUUGAUUCA	2	0.999996115805695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN11426_c0_g1_3220_TPlot.pdf
TRINITY_DN11426_c0_g1:3274	si_s90	TRINITY_DN11426_c0_g1	3262	3283	3274	-35.30	-23.20	0.657223796033994	5.5	1-5,3283-3279;7-17,3277-3267;18-19,3265-3264	6-6,3278-3278[SIL];x-x,3266-3266[BULt];20-21,3263-3262[UP3]	..((.(((((((((((.(((((&))))).)))))))))))-))..	AAGACGGCGAAGAAGACGAAAG&CUUUCUUCUUCUUCGCU-UCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN11426_c0_g1_3274_TPlot.pdf
TRINITY_DN11426_c0_g1:3276	si_s88	TRINITY_DN11426_c0_g1	3264	3285	3276	-34.80	-23.00	0.660919540229885	6.5	3-7,3283-3279;9-19,3277-3267;20-21,3265-3264	1-2,3285-3284[UP5];8-8,3278-3278[SIL];x-x,3266-3266[BULt]	((.(((((((((((.(((((..&..))))).)))))))))))-))	GACGGCGAAGAAGACGAAAGCA&UCCUUUCUUCUUCUUCGCU-UC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN11426_c0_g1_3276_TPlot.pdf
TRINITY_DN11426_c0_g1:3277	si_s87	TRINITY_DN11426_c0_g1	3266	3286	3277	-32.90	-22.90	0.696048632218845	8.5	4-8,3283-3279;10-20,3277-3267	1-3,3286-3284[UP5];9-9,3278-3278[SIL];21-21,3266-3266[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CGGCGAAGAAGACGAAAGCAA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999998439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN11426_c0_g1_3277_TPlot.pdf
TRINITY_DN11426_c0_g1:3278	si_s86	TRINITY_DN11426_c0_g1	3267	3287	3278	-32.90	-22.90	0.696048632218845	9.5	5-9,3283-3279;11-21,3277-3267	1-4,3287-3284[UP5];10-10,3278-3278[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GGCGAAGAAGACGAAAGCAAA&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999996286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN11426_c0_g1_3278_TPlot.pdf
TRINITY_DN11426_c0_g1:3414	si_s91	TRINITY_DN11426_c0_g1	3403	3423	3414	-34.70	-23.30	0.671469740634006	6	2-16,3422-3408;18-20,3406-3404	1-1,3423-3423[UP5];17-17,3407-3407[SIL];21-21,3403-3403[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	CUUGUGGUGAAGAGGAAGAAG&UUUCUUCUUCUUCGCUUCGGA	4	0.999999999999317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN11426_c0_g1_3414_TPlot.pdf
TRINITY_DN11426_c0_g1:3419	si_s86	TRINITY_DN11426_c0_g1	3408	3435	3419	-32.90	-24.60	0.747720364741641	18.5	2-7,3434-3429;8-21,3421-3408	1-1,3435-3435[UP5];x-x,3428-3422[BULt]	((((((((((((((.......((((((.&.))))))-------))))))))))))))	GGUGAAGAGGAAGAAGAAGGUGAGGAGG&UUUCCUU-------UCUUCUUCUUCGCU	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN11426_c0_g1_3419_TPlot.pdf
TRINITY_DN11426_c0_g1:3424	si_s84	TRINITY_DN11426_c0_g1	3413	3433	3424	-32.30	-24.70	0.764705882352941	6.5	1-5,3433-3429;7-20,3427-3414	6-6,3428-3428[SIL];21-21,3413-3413[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	AGAGGAAGAAGAAGGUGAGGA&UCUUUCCUUUCUUCUUCUUCG	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN11426_c0_g1_3424_TPlot.pdf
TRINITY_DN11426_c0_g1:3428	si_s80	TRINITY_DN11426_c0_g1	3417	3437	3428	-28.20	-22.50	0.797872340425532	7	1-9,3437-3429;11-21,3427-3417	10-10,3428-3428[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GAAGAAGAAGGUGAGGAGGAA&UUUUUCUUUCCUUUCUUCUUC	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN11426_c0_g1_3428_TPlot.pdf
TRINITY_DN11426_c0_g1:3429	si_s807	TRINITY_DN11426_c0_g1	3417	3438	3429	-28.90	-20.00	0.69204152249135	9.5	3-7,3436-3432;9-17,3430-3422;18-20,3420-3418	1-2,3438-3437[UP5];8-8,3431-3431[SIL];x-x,3421-3421[BULt];21-21,3417-3417[UP3]	.(((.(((((((((.(((((..&..))))).)))))))))-))).	GAAGAAGAAGGUGAGGAGGAAG&UAUCUUCGUUACCUUUU-CUUA	2	0.999258117864311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN11426_c0_g1_3429_TPlot.pdf
TRINITY_DN11426_c0_g1:3431	si_s77	TRINITY_DN11426_c0_g1	3420	3440	3431	-25.50	-19.40	0.76078431372549	7	1-12,3440-3429;14-21,3427-3420	13-13,3428-3428[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAAGAAGGUGAGGAGGAAGAG&UUUUUUUUCUUUCCUUUCUUC	4	0.999999999908935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11426_c0_g1_3431_TPlot.pdf
TRINITY_DN11426_c0_g1:3433	si_s90	TRINITY_DN11426_c0_g1	3421	3442	3433	-35.30	-25.10	0.711048158640227	7.5	1-16,3442-3427;17-19,3425-3423	x-x,3426-3426[BULt];20-21,3422-3421[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	AAGAAGGUGAGGAGGAAGAGGG&CUUUCUUCUUCUUCGC-UUCGG	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN11426_c0_g1_3433_TPlot.pdf
TRINITY_DN11426_c0_g1:3437	si_s86	TRINITY_DN11426_c0_g1	3426	3445	3437	-32.90	-25.70	0.781155015197568	6.5	1-7,3445-3439;9-21,3438-3426	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	GGUGAGGAGGAAG-AGGGAGG&UUUCCUUUCUUCUUCUUCGCU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN11426_c0_g1_3437_TPlot.pdf
TRINITY_DN11426_c0_g1:4448	si_a147	TRINITY_DN11426_c0_g1	4439	4457	4448	-30.40	-20.30	0.667763157894737	6.5	1-13,4457-4445;16-20,4444-4440	14-15,x-x[BULq];21-21,4439-4439[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	CGACUU--AAACAGCGACGGU&AUCGUUGUUGUUUUAAGGUCA	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN11426_c0_g1_4448_TPlot.pdf
TRINITY_DN11426_c0_g1:4450	si_a145	TRINITY_DN11426_c0_g1	4440	4459	4450	-28.10	-19.40	0.690391459074733	6.5	1-15,4459-4445;17-19,4444-4442	16-16,x-x[BULq];20-21,4441-4440[UP3]	..(((-(((((((((((((((&))))))))))))))).)))..	GACUU-AAACAGCGACGGUUG&UAAUCGUUGUUGUUUUAAGGU	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN11426_c0_g1_4450_TPlot.pdf
TRINITY_DN11426_c0_g1:4451	si_a144	TRINITY_DN11426_c0_g1	4441	4460	4451	-27.40	-19.90	0.726277372262774	6.5	1-16,4460-4445;18-20,4444-4442	17-17,x-x[BULq];21-21,4441-4441[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	ACUU-AAACAGCGACGGUUGG&UUAAUCGUUGUUGUUUUAAGG	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN11426_c0_g1_4451_TPlot.pdf
TRINITY_DN11426_c0_g1:4452	si_a143	TRINITY_DN11426_c0_g1	4442	4461	4452	-25.10	-19.40	0.772908366533864	7	2-17,4460-4445;19-21,4444-4442	1-1,4461-4461[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	CUU-AAACAGCGACGGUUGGG&AUUAAUCGUUGUUGUUUUAAG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN11426_c0_g1_4452_TPlot.pdf
TRINITY_DN11426_c0_g1:4457	si_a138	TRINITY_DN11426_c0_g1	4446	4465	4457	-26.30	-18.60	0.707224334600761	10	1-3,4465-4463;7-21,4460-4446	4-6,4462-4461[AILq]	(((((((((((((((..-(((&)))...)))))))))))))))	AACAGCGACGGUUGGGU-CUA&UAGUAAUUAAUCGUUGUUGUU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN11426_c0_g1_4457_TPlot.pdf
TRINITY_DN11426_c0_g1:5416	si_a474	TRINITY_DN11426_c0_g1	5405	5425	5416	-23.60	-15.40	0.652542372881356	8	2-16,5424-5410	1-1,5425-5425[UP5];17-21,5409-5405[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGAGGAUAACGGUAAUUACAA&AUGUAAUUAUUGUUAUAUAGA	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN11426_c0_g1_5416_TPlot.pdf
TRINITY_DN11426_c0_g1:5417	si_a473	TRINITY_DN11426_c0_g1	5406	5426	5417	-23.00	-15.40	0.669565217391304	9	3-17,5424-5410	1-2,5426-5425[UP5];18-21,5409-5406[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAGGAUAACGGUAAUUACAAA&UAUGUAAUUAUUGUUAUAUAG	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN11426_c0_g1_5417_TPlot.pdf
TRINITY_DN11426_c0_g1:5419	si_a471	TRINITY_DN11426_c0_g1	5408	5428	5419	-21.10	-15.40	0.729857819905213	10	5-19,5424-5410	1-4,5428-5425[UP5];20-21,5409-5408[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGAUAACGGUAAUUACAAAAU&AAUAUGUAAUUAUUGUUAUAU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN11426_c0_g1_5419_TPlot.pdf
TRINITY_DN11426_c0_g1:5421	si_a469	TRINITY_DN11426_c0_g1	5410	5430	5421	-21.10	-15.00	0.710900473933649	12	7-21,5424-5410	1-6,5430-5425[UP5]	(((((((((((((((......&......)))))))))))))))	AUAACGGUAAUUACAAAAUGG&AUAAUAUGUAAUUAUUGUUAU	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN11426_c0_g1_5421_TPlot.pdf
TRINITY_DN11426_c0_g1:5647	si_a403	TRINITY_DN11426_c0_g1	5636	5656	5647	-22.00	-14.50	0.659090909090909	10.5	2-15,5655-5642	1-1,5656-5656[UP5];16-21,5641-5636[UP3]	......((((((((((((((.&.))))))))))))))......	AACUGAAAGCAAGAUAGUUCA&AGAAUUGUUUUGUUUAUAUUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11426_c0_g1_5647_TPlot.pdf
TRINITY_DN11426_c0_g1:5831	si_s72	TRINITY_DN11426_c0_g1	5820	5838	5831	-24.10	-16.20	0.672199170124481	11	1-7,5838-5832;11-21,5830-5820	8-10,5831-5831[AILq]	(((((((((((.--(((((((&)))))))...)))))))))))	GAGGAAGGAGGU--AGUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11426_c0_g1_5831_TPlot.pdf
TRINITY_DN11426_c0_g1:5832	si_s71	TRINITY_DN11426_c0_g1	5821	5839	5832	-25.70	-17.40	0.67704280155642	10	1-8,5839-5832;12-21,5830-5821	9-11,5831-5831[AILq]	((((((((((.--((((((((&))))))))...))))))))))	AGGAAGGAGGU--AGUGGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN11426_c0_g1_5832_TPlot.pdf
TRINITY_DN11426_c0_g1:6652	si_a495	TRINITY_DN11426_c0_g1	6641	6663	6652	-31.90	-20.90	0.655172413793103	12.5	4-8,6660-6656;9-20,6653-6642	1-3,6663-6661[UP5];x-x,6655-6654[BULt];21-21,6641-6641[UP3]	.((((((((((((..(((((...&...)))))--)))))))))))).	AGAGGACGAAGAGGUCGACAGAA&AUAUGUCG--UUUUUCGUCUUCC	3	0.999999999989552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN11426_c0_g1_6652_TPlot.pdf
TRINITY_DN11426_c0_g1:6653	si_a494	TRINITY_DN11426_c0_g1	6642	6664	6653	-29.50	-20.90	0.708474576271186	13.5	5-9,6660-6656;10-21,6653-6642	1-4,6664-6661[UP5];x-x,6655-6654[BULt]	((((((((((((..(((((....&....)))))--))))))))))))	GAGGACGAAGAGGUCGACAGAAA&AAUAUGUCG--UUUUUCGUCUUC	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN11426_c0_g1_6653_TPlot.pdf
TRINITY_DN11426_c0_g1:6656	si_a631	TRINITY_DN11426_c0_g1	6645	6665	6656	-25.70	-16.80	0.653696498054475	13.5	6-19,6660-6647	1-5,6665-6661[UP5];20-21,6646-6645[UP3]	..((((((((((((((.....&.....))))))))))))))..	GACGAAGAGGUCGACAGAAAG&UAUUAUGUCGAUUUUUUUGAG	3	0.999999983764423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN11426_c0_g1_6656_TPlot.pdf
TRINITY_DN11426_c0_g1:6657	si_a630	TRINITY_DN11426_c0_g1	6646	6668	6657	-25.80	-18.28	0.708527131782946	13	1-4,6668-6665;7-20,6660-6647	5-6,6664-6661[AILt];21-21,6646-6646[UP3]	.((((((((((((((....((((&))))--..)))))))))))))).	ACGAAGAGGUCGACAGAAAGUGC&GUAU--UAUGUCGAUUUUUUUGA	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN11426_c0_g1_6657_TPlot.pdf
TRINITY_DN11426_c0_g1:6658	si_a629	TRINITY_DN11426_c0_g1	6647	6669	6658	-26.30	-18.58	0.706463878326996	13	2-5,6668-6665;8-21,6660-6647	1-1,6669-6669[UP5];6-7,6664-6661[AILt]	((((((((((((((....((((.&.))))--..))))))))))))))	CGAAGAGGUCGACAGAAAGUGCC&CGUAU--UAUGUCGAUUUUUUUG	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN11426_c0_g1_6658_TPlot.pdf
TRINITY_DN11426_c0_g1:6659	si_a628	TRINITY_DN11426_c0_g1	6648	6678	6659	-27.10	-19.00	0.701107011070111	24	1-8,6678-6671;9-21,6660-6648	x-x,6670-6661[BULt]	(((((((((((((..........((((((((&))))))))----------)))))))))))))	GAAGAGGUCGACAGAAAGUGCCAUGAUAUGC&GCGUAUUA----------UGUCGAUUUUUUU	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN11426_c0_g1_6659_TPlot.pdf
TRINITY_DN11426_c0_g1:6660	si_a627	TRINITY_DN11426_c0_g1	6649	6669	6660	-29.50	-19.24	0.652203389830508	12.5	1-4,6669-6666;10-21,6660-6649	5-9,6665-6661[SIL]	((((((((((((.....((((&)))).....))))))))))))	AAGAGGUCGACAGAAAGUGCC&GGCGUAUUAUGUCGAUUUUUU	2	0.999961640317944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN11426_c0_g1_6660_TPlot.pdf
TRINITY_DN11426_c0_g1:6733	si_s803	TRINITY_DN11426_c0_g1	6722	6742	6733	-26.00	-18.00	0.692307692307692	8	1-12,6742-6731;14-17,6729-6726	13-13,6730-6730[SIL];18-21,6725-6722[UP3]	....((((.((((((((((((&)))))))))))).))))....	UGGUGGUAUUGGAGAUGAAAU&AUUUUAUCUUCGUUACCUUUU	4	0.999999942932217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN11426_c0_g1_6733_TPlot.pdf
TRINITY_DN11426_c0_g1:6734	si_s802	TRINITY_DN11426_c0_g1	6723	6743	6734	-26.40	-19.30	0.731060606060606	6.5	1-13,6743-6731;15-18,6729-6726	14-14,6730-6730[SIL];19-21,6725-6723[UP3]	...((((.(((((((((((((&))))))))))))).))))...	GGUGGUAUUGGAGAUGAAAUA&UAUUUUAUCUUCGUUACCUUU	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN11426_c0_g1_6734_TPlot.pdf
TRINITY_DN11426_c0_g1:6735	si_s801	TRINITY_DN11426_c0_g1	6724	6744	6735	-28.20	-19.30	0.684397163120567	6.5	2-14,6743-6731;16-19,6729-6726	1-1,6744-6744[UP5];15-15,6730-6730[SIL];20-21,6725-6724[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	GUGGUAUUGGAGAUGAAAUAG&GUAUUUUAUCUUCGUUACCUU	2	0.993115340016426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN11426_c0_g1_6735_TPlot.pdf
TRINITY_DN11426_c0_g1:6737	si_s799	TRINITY_DN11426_c0_g1	6726	6745	6737	-30.00	-19.60	0.653333333333333	5	1-2,6745-6744;4-16,6743-6731;18-21,6729-6726	3-3,x-x[BULq];17-17,6730-6730[SIL]	((((.(((((((((((((-((&)).))))))))))))).))))	GGUAUUGGAGAUGAAAUA-GA&UCGUAUUUUAUCUUCGUUACC	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN11426_c0_g1_6737_TPlot.pdf
TRINITY_DN11426_c0_g1:6803	si_a814	TRINITY_DN11426_c0_g1	6792	6812	6803	-32.90	-21.60	0.656534954407295	6	1-15,6812-6798;17-17,6796-6796	16-16,6797-6797[SIL];18-21,6795-6792[UP3]	....(.(((((((((((((((&))))))))))))))).)....	AUUACGUUCUUCUUCUUCGUU&AGCGAAGAAGAAGAAAGGAAA	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN11426_c0_g1_6803_TPlot.pdf
TRINITY_DN11426_c0_g1:6804	si_a813	TRINITY_DN11426_c0_g1	6793	6813	6804	-32.90	-21.80	0.662613981762918	6	2-16,6812-6798;18-18,6796-6796	1-1,6813-6813[UP5];17-17,6797-6797[SIL];19-21,6795-6793[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	UUACGUUCUUCUUCUUCGUUA&AAGCGAAGAAGAAGAAAGGAA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN11426_c0_g1_6804_TPlot.pdf
TRINITY_DN11426_c0_g1:805	si_s70	TRINITY_DN11426_c0_g1	794	814	805	-25.80	-18.00	0.697674418604651	7.5	2-6,813-809;8-18,807-797;20-21,795-794	1-1,814-814[UP5];7-7,808-808[SIL];19-19,796-796[SIL]	((.(((((((((((.(((((.&.))))).))))))))))).))	GGCGAGAAAGAAGAAGGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999999499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN11426_c0_g1_805_TPlot.pdf
TRINITY_DN11426_c0_g1:808	si_s86	TRINITY_DN11426_c0_g1	794	817	808	-32.90	-22.40	0.680851063829787	11.5	5-16,813-802;17-21,798-794	1-4,817-814[UP5];x-x,801-799[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	GGCGAGAAAGAAGAAGGAAGAGUU&UUUCCUUUCUUCUUCU---UCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN11426_c0_g1_808_TPlot.pdf
TRINITY_DN11426_c0_g1:809	si_a782	TRINITY_DN11426_c0_g1	799	818	809	-26.40	-19.70	0.746212121212121	6.5	1-10,818-809;12-18,808-802	11-11,x-x[BULq];19-21,801-799[UP3]	...(((((((-((((((((((&)))))))))).)))))))...	GAAAGAAGAA-GGAAGAGUUG&CAACUCUUCUAUUUUUCUAUU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN11426_c0_g1_809_TPlot.pdf
TRINITY_DN11426_c0_g1:813	si_a778	TRINITY_DN11426_c0_g1	803	822	813	-28.30	-19.70	0.696113074204947	7	4-14,819-809;16-21,808-803	1-3,822-820[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GAAGAA-GGAAGAGUUGAUUA&GAUUCAACUCUUCUAUUUUUC	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN11426_c0_g1_813_TPlot.pdf
TRINITY_DN11429_c0_g1:1202	si_a406	TRINITY_DN11429_c0_g1	1191	1211	1202	-19.80	-13.50	0.681818181818182	8	1-4,1211-1208;6-20,1206-1192	5-5,1207-1207[SIL];21-21,1191-1191[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	GUUGAAUGUGAAUAAGUCGAU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN11429_c0_g1_1202_TPlot.pdf
TRINITY_DN11431_c4_g1:183	si_s699	TRINITY_DN11431_c4_g1	172	192	183	-28.60	-20.20	0.706293706293706	9.5	4-17,189-176;19-20,174-173	1-3,192-190[UP5];18-18,175-175[SIL];21-21,172-172[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	CUUGGCUAAUGAAUCGGCAAG&UUAGUCGAUUUAUUAGUGAAC	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN11431_c4_g1_183_TPlot.pdf
TRINITY_DN11434_c1_g1:190	si_a65	TRINITY_DN11434_c1_g1	179	198	190	-27.70	-18.50	0.667870036101083	4	1-5,198-194;7-13,193-187;15-21,185-179	6-6,x-x[BULq];14-14,186-186[SIL]	(((((((.(((((((-(((((&))))).))))))).)))))))	AAAACAAAUUGAAAG-AGUGA&UCGCUUCUUUCAAAUUGUUUU	4	0.99999995898401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN11434_c1_g1_190_TPlot.pdf
TRINITY_DN11434_c3_g1:46	si_a20	TRINITY_DN11434_c3_g1	35	56	46	-26.70	-17.72	0.663670411985019	12.5	1-6,56-51;10-19,46-37	7-9,50-47[AILt];20-21,36-35[UP3]	..((((((((((....((((((&))))))-...))))))))))..	GUGGGCUGAAAAGUUCGUAGGC&GCCUAU-UUAUUUUUAGUUCUA	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN11434_c3_g1_46_TPlot.pdf
TRINITY_DN11434_c3_g1:47	si_a19	TRINITY_DN11434_c3_g1	36	57	47	-27.00	-19.12	0.708148148148148	11.5	1-7,57-51;11-20,46-37	8-10,50-47[AILt];21-21,36-36[UP3]	.((((((((((....(((((((&)))))))-...)))))))))).	UGGGCUGAAAAGUUCGUAGGCU&AGCCUAU-UUAUUUUUAGUUCU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN11434_c3_g1_47_TPlot.pdf
TRINITY_DN11434_c4_g1:794	si_a321	TRINITY_DN11434_c4_g1	784	803	794	-26.70	-18.32	0.686142322097378	6	1-13,803-791;18-21,787-784	14-17,790-788[AILq]	((((...-(((((((((((((&)))))))))))))....))))	GGAAGGU-AAAGUUAUGGAUA&UAUCCAUGAUUUUUUUAUUCC	1	0.073994875950866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN11434_c4_g1_794_TPlot.pdf
TRINITY_DN11434_c4_g1:796	si_a319	TRINITY_DN11434_c4_g1	780	805	796	-22.40	-14.60	0.651785714285714	9.5	2-14,804-792;15-21,786-780	1-1,805-805[UP5];x-x,791-787[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	GAUAGGAAGGUAAAGUUAUGGAUAAC&UUUAUCCAUGAUUU-----UUUUAUU	2	0.999999999984913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN11434_c4_g1_796_TPlot.pdf
TRINITY_DN11437_c0_g1:314	si_s825	TRINITY_DN11437_c0_g1	302	323	314	-21.30	-14.00	0.657276995305164	9.5	4-11,320-313;12-21,311-302	1-3,323-321[UP5];x-x,312-312[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	UAGGUUGUUUAUUCAUUGUGCC&UUAAUAAUGAA-AAACAAUUUG	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN11437_c0_g1_314_TPlot.pdf
TRINITY_DN11437_c0_g2:687	si_a639	TRINITY_DN11437_c0_g2	677	696	687	-23.60	-16.40	0.694915254237288	4	2-13,695-684;15-19,683-679	1-1,696-696[UP5];14-14,x-x[BULq];20-21,678-677[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	AAAUAUU-CUCAAAAAAAUCA&CGAUUUUUUUGAGUAAUAUAU	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN11437_c0_g2_687_TPlot.pdf
TRINITY_DN11438_c0_g2:107	si_a777	TRINITY_DN11438_c0_g2	96	116	107	-27.00	-18.70	0.692592592592593	9	1-14,116-103	15-21,102-96[UP3]	.......((((((((((((((&)))))))))))))).......	GCAAAACGAAGAGUUGGAUUA&UGAUUCAACUCUUCUAUUUUU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN11438_c0_g2_107_TPlot.pdf
TRINITY_DN11438_c0_g2:109	si_a775	TRINITY_DN11438_c0_g2	98	118	109	-27.20	-18.80	0.691176470588235	10	3-16,116-103	1-2,118-117[UP5];17-21,102-98[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAAACGAAGAGUUGGAUUACA&AUUGAUUCAACUCUUCUAUUU	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN11438_c0_g2_109_TPlot.pdf
TRINITY_DN11438_c0_g2:112	si_a772	TRINITY_DN11438_c0_g2	101	125	112	-29.80	-19.80	0.664429530201342	13	2-5,124-121;6-19,116-103	1-1,125-125[UP5];x-x,120-117[BULt];20-21,102-101[UP3]	..((((((((((((((....((((.&.))))----))))))))))))))..	ACGAAGAGUUGGAUUACACCAUCAC&UUGAU----UGAUUCAACUCUUCUA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN11438_c0_g2_112_TPlot.pdf
TRINITY_DN1143_c0_g1:2387	si_s802	TRINITY_DN1143_c0_g1	2377	2396	2387	-26.40	-17.20	0.651515151515151	10.5	3-10,2394-2387;12-18,2386-2380	1-2,2396-2395[UP5];11-11,x-x[BULq];19-21,2379-2377[UP3]	...(((((((-((((((((..&..)))))))).)))))))...	GUUGGUAGCG-AGGUGAAACG&UAUUUUAUCUUCGUUACCUUU	4	0.999999999999713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1143_c0_g1_2387_TPlot.pdf
TRINITY_DN1143_c0_g1:2722	si_a643	TRINITY_DN1143_c0_g1	2711	2731	2722	-28.30	-19.30	0.681978798586572	8	1-7,2731-2725;10-20,2722-2712	8-9,2724-2723[SIL];21-21,2711-2711[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	ACCGGUGUAUUAGACAAGGAA&UUUUUUGAGUAAUAUAUCGGG	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN1143_c0_g1_2722_TPlot.pdf
TRINITY_DN1143_c0_g1:279	si_s82	TRINITY_DN1143_c0_g1	268	290	279	-28.90	-19.10	0.660899653979239	9	1-5,290-286;7-8,284-283;9-9,281-281;10-21,279-268	6-6,285-285[SIL];x-x,282-282[BULt];x-x,280-280[BULt]	((((((((((((.(.((.(((((&))))).))-)-))))))))))))	GAGAAGGAGAAGCGAGAUAGAGA&UUUCUUUC-C-UUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1143_c0_g1_279_TPlot.pdf
TRINITY_DN11442_c0_g1:2298	si_s79	TRINITY_DN11442_c0_g1	2286	2307	2298	-26.20	-17.70	0.675572519083969	8	4-8,2304-2300;10-15,2298-2293;16-21,2291-2286	1-3,2307-2305[UP5];9-9,2299-2299[SIL];x-x,2292-2292[BULt]	((((((.((((((.(((((...&...))))).))))))-))))))	AAGAAGAAAAGGAUAGAAAUGC&UUUUUUCUUUCCUUU-CUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11442_c0_g1_2298_TPlot.pdf
TRINITY_DN11442_c0_g1:502	si_s100	TRINITY_DN11442_c0_g1	491	511	502	-33.70	-23.50	0.697329376854599	12	5-17,507-495	1-4,511-508[UP5];18-21,494-491[UP3]	....(((((((((((((....&....)))))))))))))....	AUCGUCCAAUCCGGAGCCAAU&CUUCGCUUCGGAUUGGAAAAU	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN11442_c0_g1_502_TPlot.pdf
TRINITY_DN1144_c0_g1:1229	si_a79	TRINITY_DN1144_c0_g1	1216	1238	1229	-22.20	-14.80	0.666666666666667	10	1-10,1238-1229;11-20,1226-1217	x-x,1228-1227[BULt];21-21,1216-1216[UP3]	.((((((((((..((((((((((&))))))))))--)))))))))).	AUUUUUGAUGAUUUGAGGAACGA&UUGUUUUUCA--UUAUUAAGAAA	3	0.999999823029944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1144_c0_g1_1229_TPlot.pdf
TRINITY_DN1144_c0_g1:1667	si_s552	TRINITY_DN1144_c0_g1	1656	1676	1667	-21.10	-15.90	0.753554502369668	10	5-17,1672-1660;19-21,1658-1656	1-4,1676-1673[UP5];18-18,1659-1659[SIL]	(((.(((((((((((((....&....))))))))))))).)))	CGACGAUGUUAGUUCUAAUGA&AAAAUAGAAUUAAUAUUUUCG	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN1144_c0_g1_1667_TPlot.pdf
TRINITY_DN1144_c0_g1:2537	si_a317	TRINITY_DN1144_c0_g1	2526	2546	2537	-24.30	-16.40	0.674897119341564	11	1-14,2546-2533	15-21,2532-2526[UP3]	.......((((((((((((((&)))))))))))))).......	CAAUUAUAUUGUGGAUGAGUC&GAUUUAUCCAUGAUUUUUUUA	4	0.999999908254907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1144_c0_g1_2537_TPlot.pdf
TRINITY_DN1144_c0_g1:2966	si_a407	TRINITY_DN1144_c0_g1	2955	2975	2966	-19.80	-13.10	0.661616161616162	9	2-11,2974-2965;13-18,2963-2958	1-1,2975-2975[UP5];12-12,2964-2964[SIL];19-21,2957-2955[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	GGCUGGAUAGAAGCAGAACAC&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1144_c0_g1_2966_TPlot.pdf
TRINITY_DN1144_c0_g1:2967	si_a406	TRINITY_DN1144_c0_g1	2956	2976	2967	-19.80	-13.10	0.661616161616162	9	3-12,2974-2965;14-19,2963-2958	1-2,2976-2975[UP5];13-13,2964-2964[SIL];20-21,2957-2956[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	GCUGGAUAGAAGCAGAACACA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1144_c0_g1_2967_TPlot.pdf
TRINITY_DN1144_c0_g1:2968	si_a405	TRINITY_DN1144_c0_g1	2957	2977	2968	-19.80	-13.10	0.661616161616162	10	4-13,2974-2965;15-20,2963-2958	1-3,2977-2975[UP5];14-14,2964-2964[SIL];21-21,2957-2957[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	CUGGAUAGAAGCAGAACACAG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1144_c0_g1_2968_TPlot.pdf
TRINITY_DN1144_c0_g1:363	si_a415	TRINITY_DN1144_c0_g1	352	372	363	-18.10	-12.40	0.685082872928177	5.5	1-10,372-363;12-16,361-357;18-21,355-352	11-11,362-362[SIL];17-17,356-356[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	CUAUUUUUGUGUAAGUAUGAA&UUUAUAUUUAAAUAAAUAUAG	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN1144_c0_g1_363_TPlot.pdf
TRINITY_DN11453_c0_g1:276	si_a380	TRINITY_DN11453_c0_g1	264	285	276	-24.00	-15.80	0.658333333333333	11.5	4-12,282-274;13-18,272-267	1-3,285-283[UP5];x-x,273-273[BULt];19-21,266-264[UP3]	...((((((.(((((((((...&...)))))))))-))))))...	AUCCUUAGUGUCGAGAUCAAAC&AAAUGAUUUCGA-AUUAAGAAU	0	0.0924962894744313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN11453_c0_g1_276_TPlot.pdf
TRINITY_DN11453_c0_g1:278	si_a378	TRINITY_DN11453_c0_g1	266	287	278	-23.80	-15.80	0.663865546218487	12.5	6-14,282-274;15-20,272-267	1-5,287-283[UP5];x-x,273-273[BULt];21-21,266-266[UP3]	.((((((.(((((((((.....&.....)))))))))-)))))).	CCUUAGUGUCGAGAUCAAACGG&AAAAAUGAUUUCGA-AUUAAGA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a378_TRINITY_DN11453_c0_g1_278_TPlot.pdf
TRINITY_DN11455_c1_g1:239	si_a287	TRINITY_DN11455_c1_g1	228	248	239	-29.20	-20.70	0.708904109589041	9.5	1-15,248-234	16-21,233-228[UP3]	......(((((((((((((((&)))))))))))))))......	AAUCGAUGGGUCCGAGCGAUU&GAUCGCUUGGAUUUAAAAAAG	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN11455_c1_g1_239_TPlot.pdf
TRINITY_DN11457_c0_g1:625	si_s598	TRINITY_DN11457_c0_g1	614	634	625	-28.20	-19.80	0.702127659574468	12.5	6-19,629-616	1-5,634-630[UP5];20-21,615-614[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGAAGAUUUGCUUGGUCAUU&UAAAUCCAAGCGAAUCUUUUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN11457_c0_g1_625_TPlot.pdf
TRINITY_DN11459_c0_g1:1911	si_a303	TRINITY_DN11459_c0_g1	1901	1920	1911	-28.40	-20.10	0.707746478873239	5.5	1-10,1920-1911;12-21,1910-1901	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	GUGAGUCCAA-CGAGUUUUUU&AAAAGAUUCGCUUGGAUUUAU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN11459_c0_g1_1911_TPlot.pdf
TRINITY_DN1145_c0_g1:1688	si_a611	TRINITY_DN1145_c0_g1	1678	1697	1688	-36.40	-23.80	0.653846153846154	8	1-1,1697-1697;4-11,1694-1687;13-20,1686-1679	2-3,1696-1695[SIL];12-12,x-x[BULq];21-21,1678-1678[UP3]	.((((((((-((((((((..(&)..)))))))).)))))))).	CUGCCUGGU-GAUUGGAAGGG&CAAUUCCAAUCGACUAGGCGU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN1145_c0_g1_1688_TPlot.pdf
TRINITY_DN1145_c0_g1:1689	si_a610	TRINITY_DN1145_c0_g1	1679	1698	1689	-38.10	-28.00	0.73490813648294	6	1-2,1698-1697;5-12,1694-1687;14-21,1686-1679	3-4,1696-1695[SIL];13-13,x-x[BULq]	((((((((-((((((((..((&))..)))))))).))))))))	UGCCUGGU-GAUUGGAAGGGC&GCAAUUCCAAUCGACUAGGCG	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a610_TRINITY_DN1145_c0_g1_1689_TPlot.pdf
TRINITY_DN1145_c0_g1:1775	si_a488	TRINITY_DN1145_c0_g1	1764	1784	1775	-26.40	-17.30	0.65530303030303	13.5	6-18,1779-1767	1-5,1784-1780[UP5];19-21,1766-1764[UP3]	...(((((((((((((.....&.....)))))))))))))...	UGUAGACGACAUGUUCGCUCC&AUAUAGAAUAUGUCGUUUUUC	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN1145_c0_g1_1775_TPlot.pdf
TRINITY_DN1145_c0_g1:1776	si_a487	TRINITY_DN1145_c0_g1	1765	1785	1776	-24.80	-17.30	0.69758064516129	14.5	7-19,1779-1767	1-6,1785-1780[UP5];20-21,1766-1765[UP3]	..(((((((((((((......&......)))))))))))))..	GUAGACGACAUGUUCGCUCCU&UAUAUAGAAUAUGUCGUUUUU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN1145_c0_g1_1776_TPlot.pdf
TRINITY_DN1145_c0_g1:1779	si_a484	TRINITY_DN1145_c0_g1	1768	1794	1779	-27.30	-18.84	0.69010989010989	19	2-7,1793-1788;10-21,1779-1768	1-1,1794-1794[UP5];8-9,1787-1780[AILt]	((((((((((((........((((((.&.))))))------..))))))))))))	GACGACAUGUUCGCUCCUAUUAUGACG&UGUUAUA------UAGAAUAUGUCGUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN1145_c0_g1_1779_TPlot.pdf
TRINITY_DN1145_c0_g1:1780	si_a483	TRINITY_DN1145_c0_g1	1769	1795	1780	-27.40	-17.84	0.651094890510949	19.5	2-8,1794-1788;11-21,1779-1769	1-1,1795-1795[UP5];9-10,1787-1780[AILt]	(((((((((((........(((((((.&.)))))))------..)))))))))))	ACGACAUGUUCGCUCCUAUUAUGACGC&UUGUUAUA------UAGAAUAUGUCGU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN1145_c0_g1_1780_TPlot.pdf
TRINITY_DN1145_c0_g1:1991	si_a789	TRINITY_DN1145_c0_g1	1980	2000	1991	-24.80	-18.80	0.758064516129032	8.5	1-17,2000-1984	18-21,1983-1980[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGCCGAAGAUGGGAAAGUGGA&UCUAUUUUUCUAUUUUCCAAU	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1145_c0_g1_1991_TPlot.pdf
TRINITY_DN1145_c0_g1:1992	si_a788	TRINITY_DN1145_c0_g1	1981	2001	1992	-24.80	-19.50	0.786290322580645	7.5	1-18,2001-1984	19-21,1983-1981[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCCGAAGAUGGGAAAGUGGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1145_c0_g1_1992_TPlot.pdf
TRINITY_DN1145_c0_g1:1993	si_a787	TRINITY_DN1145_c0_g1	1982	2002	1993	-26.30	-19.70	0.749049429657795	7	2-19,2001-1984	1-1,2002-2002[UP5];20-21,1983-1982[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CCGAAGAUGGGAAAGUGGAAU&CUUCUAUUUUUCUAUUUUCCA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1145_c0_g1_1993_TPlot.pdf
TRINITY_DN1145_c0_g1:1994	si_a786	TRINITY_DN1145_c0_g1	1983	2003	1994	-26.60	-19.70	0.740601503759398	8	3-20,2001-1984	1-2,2003-2002[UP5];21-21,1983-1983[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGAAGAUGGGAAAGUGGAAUU&UCUUCUAUUUUUCUAUUUUCC	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1145_c0_g1_1994_TPlot.pdf
TRINITY_DN1145_c0_g1:1995	si_a785	TRINITY_DN1145_c0_g1	1984	2004	1995	-25.90	-19.70	0.760617760617761	8.5	4-21,2001-1984	1-3,2004-2002[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGAUGGGAAAGUGGAAUUA&CUCUUCUAUUUUUCUAUUUUC	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1145_c0_g1_1995_TPlot.pdf
TRINITY_DN1145_c0_g1:1996	si_a784	TRINITY_DN1145_c0_g1	1985	2005	1996	-24.70	-16.40	0.663967611336032	10.5	5-21,2001-1985	1-4,2005-2002[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGAUGGGAAAGUGGAAUUAU&ACUCUUCUAUUUUUCUAUUUU	2	0.9999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1145_c0_g1_1996_TPlot.pdf
TRINITY_DN1145_c0_g1:392	si_a400	TRINITY_DN1145_c0_g1	381	404	392	-22.80	-14.82	0.65	13.5	1-5,404-400;8-20,394-382	6-7,399-395[AILt];21-21,381-381[UP3]	.(((((((((((((.....(((((&)))))---..))))))))))))).	CAUGAACAAGACGAACAAGCUAUA&UAUAG---AAUUGUUUUGUUUAUA	3	0.999999999992594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1145_c0_g1_392_TPlot.pdf
TRINITY_DN1145_c0_g1:393	si_a399	TRINITY_DN1145_c0_g1	382	405	393	-22.60	-15.62	0.691150442477876	12	1-6,405-400;9-21,394-382	7-8,399-395[AILt]	(((((((((((((.....((((((&))))))---..)))))))))))))	AUGAACAAGACGAACAAGCUAUAU&AUAUAG---AAUUGUUUUGUUUAU	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1145_c0_g1_393_TPlot.pdf
TRINITY_DN1145_c0_g1:394	si_a398	TRINITY_DN1145_c0_g1	383	406	394	-22.40	-15.72	0.701785714285714	12	1-7,406-400;10-21,394-383	8-9,399-395[AILt]	((((((((((((.....(((((((&)))))))---..))))))))))))	UGAACAAGACGAACAAGCUAUAUU&AAUAUAG---AAUUGUUUUGUUUA	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1145_c0_g1_394_TPlot.pdf
TRINITY_DN11464_c1_g1:167	si_s72	TRINITY_DN11464_c1_g1	157	176	167	-24.10	-15.80	0.655601659751037	6.5	1-5,176-172;7-16,170-161;18-21,160-157	6-6,171-171[SIL];17-17,x-x[BULq]	((((-((((((((((.(((((&))))).)))))))))).))))	AAGG-AAGAAGAAAAUUGGGG&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11464_c1_g1_167_TPlot.pdf
TRINITY_DN11464_c2_g1:630	si_a54	TRINITY_DN11464_c2_g1	619	639	630	-37.30	-26.00	0.697050938337802	8	2-17,638-623	1-1,639-639[UP5];18-21,622-619[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUCAAGGUGAGUUGGCUCCUC&UAGGAGUCGACUCGCUUCUUU	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN11464_c2_g1_630_TPlot.pdf
TRINITY_DN11464_c2_g1:631	si_a53	TRINITY_DN11464_c2_g1	620	640	631	-39.00	-26.00	0.666666666666667	9	3-18,638-623	1-2,640-639[UP5];19-21,622-620[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCAAGGUGAGUUGGCUCCUCG&CUAGGAGUCGACUCGCUUCUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN11464_c2_g1_631_TPlot.pdf
TRINITY_DN11464_c2_g1:881	si_a550	TRINITY_DN11464_c2_g1	870	890	881	-30.90	-22.30	0.72168284789644	6	1-8,890-883;10-19,881-872	9-9,882-882[SIL];20-21,871-870[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AUGAGAUAAAGAUAUGGGUUG&CAAUCUAUUUCUUUAUCUCCC	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN11464_c2_g1_881_TPlot.pdf
TRINITY_DN11464_c2_g1:882	si_a549	TRINITY_DN11464_c2_g1	871	891	882	-29.50	-22.50	0.76271186440678	5.5	1-9,891-883;11-20,881-872	10-10,882-882[SIL];21-21,871-871[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UGAGAUAAAGAUAUGGGUUGG&UCAAUCUAUUUCUUUAUCUCC	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN11464_c2_g1_882_TPlot.pdf
TRINITY_DN11467_c0_g1:1761	si_a463	TRINITY_DN11467_c0_g1	1750	1770	1761	-19.70	-13.10	0.66497461928934	14.5	8-21,1763-1750	1-7,1770-1764[UP5]	((((((((((((((.......&.......))))))))))))))	GUAGUUGCAUAUUAAUUUACA&UUAUAUAUAAUAUGUAAUUAU	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN11467_c0_g1_1761_TPlot.pdf
TRINITY_DN1146_c0_g1:346	si_s633	TRINITY_DN1146_c0_g1	335	355	346	-37.90	-26.30	0.693931398416887	10.5	4-11,352-345;13-21,343-335	1-3,355-353[UP5];12-12,344-344[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AGGGCAGACAUCUGCGAGUAU&CUUUUCGUAGGCGUUUGCCCU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN1146_c0_g1_346_TPlot.pdf
TRINITY_DN1146_c0_g1:347	si_s632	TRINITY_DN1146_c0_g1	336	356	347	-38.20	-25.20	0.659685863874345	11.5	5-12,352-345;14-21,343-336	1-4,356-353[UP5];13-13,344-344[SIL]	((((((((.((((((((....&....)))))))).))))))))	GGGCAGACAUCUGCGAGUAUU&UCUUUUCGUAGGCGUUUGCCC	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN1146_c0_g1_347_TPlot.pdf
TRINITY_DN1146_c0_g1:414	si_a413	TRINITY_DN1146_c0_g1	402	423	414	-18.40	-14.80	0.804347826086957	6	2-12,422-412;13-21,410-402	1-1,423-423[UP5];x-x,411-411[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	AUAUUUAUUGUGAAUAUGGACG&UGUUUAUAUUUA-AAUAAAUAU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN1146_c0_g1_414_TPlot.pdf
TRINITY_DN1146_c0_g1:415	si_a412	TRINITY_DN1146_c0_g1	403	424	415	-18.30	-13.80	0.754098360655738	7	3-13,422-412;14-21,410-403	1-2,424-423[UP5];x-x,411-411[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UAUUUAUUGUGAAUAUGGACGU&UUGUUUAUAUUUA-AAUAAAUA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN1146_c0_g1_415_TPlot.pdf
TRINITY_DN1146_c0_g1:654	si_a76	TRINITY_DN1146_c0_g1	643	663	654	-21.20	-14.50	0.683962264150943	7.5	2-4,662-660;6-16,658-648;19-21,645-643	1-1,663-663[UP5];5-5,659-659[SIL];17-18,647-646[SIL]	(((..(((((((((((.(((.&.))).)))))))))))..)))	CUUUUUAGUGAAAAGCUGUUA&AAAUUGUUUUUCAUUAUUAAG	3	0.999999931658372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1146_c0_g1_654_TPlot.pdf
TRINITY_DN11471_c0_g1:560	si_a671	TRINITY_DN11471_c0_g1	549	568	560	-32.10	-21.00	0.654205607476635	10.5	4-5,565-564;7-13,563-557;15-21,555-549	1-3,568-566[UP5];6-6,x-x[BULq];14-14,556-556[SIL]	(((((((.(((((((-((...&...)).))))))).)))))))	CGCGUGGUUGGGGAA-CAGAC&UAUUGAUUCCUUAUUCACGCG	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a671_TRINITY_DN11471_c0_g1_560_TPlot.pdf
TRINITY_DN11474_c0_g1:2406	si_a443	TRINITY_DN11474_c0_g1	2394	2415	2406	-30.00	-20.52	0.684	8	1-13,2415-2403;17-21,2398-2394	14-16,2402-2399[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	GCAGCUAUAUAUUUCGUGUCCA&UGGAUAUGAGAUA-AUUGUUGU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN11474_c0_g1_2406_TPlot.pdf
TRINITY_DN11474_c0_g1:2458	si_a720	TRINITY_DN11474_c0_g1	2447	2467	2458	-35.30	-23.70	0.671388101983003	8	2-13,2466-2455;15-20,2453-2448	1-1,2467-2467[UP5];14-14,2454-2454[SIL];21-21,2447-2447[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CGAUGUUGGAGUGAUGGUUGA&AUAAUCGUUACUCGGGCAUCU	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN11474_c0_g1_2458_TPlot.pdf
TRINITY_DN11474_c0_g1:2459	si_a719	TRINITY_DN11474_c0_g1	2448	2468	2459	-34.60	-23.40	0.676300578034682	9	3-14,2466-2455;16-21,2453-2448	1-2,2468-2467[UP5];15-15,2454-2454[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GAUGUUGGAGUGAUGGUUGAG&AAUAAUCGUUACUCGGGCAUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN11474_c0_g1_2459_TPlot.pdf
TRINITY_DN11475_c0_g1:1169	si_s208	TRINITY_DN11475_c0_g1	1158	1180	1169	-34.50	-23.60	0.684057971014493	10.5	2-9,1179-1172;10-18,1169-1161	1-1,1180-1180[UP5];x-x,1171-1170[BULt];19-21,1160-1158[UP3]	...(((((((((..((((((((.&.))))))))--)))))))))...	GACUCGAAUACGUCGCUGGUACU&UGUACCAGU--UGUGUUCGAAAC	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN11475_c0_g1_1169_TPlot.pdf
TRINITY_DN11475_c0_g1:1260	si_a778	TRINITY_DN11475_c0_g1	1248	1269	1260	-28.30	-20.10	0.710247349823322	8	1-8,1269-1262;10-18,1260-1252;20-21,1249-1248	9-9,1261-1261[SIL];19-19,1251-1250[AILt]	((..(((((((((.((((((((&)))))))).)))))))))-.))	GAUCAGAUGGAGGUGUUGGGUC&GAUUCAACUCUUCUAUUU-UUC	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN11475_c0_g1_1260_TPlot.pdf
TRINITY_DN11475_c0_g1:1263	si_a775	TRINITY_DN11475_c0_g1	1252	1272	1263	-27.20	-20.20	0.742647058823529	9.5	3-11,1270-1262;13-21,1260-1252	1-2,1272-1271[UP5];12-12,1261-1261[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AGAUGGAGGUGUUGGGUCGGA&AUUGAUUCAACUCUUCUAUUU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN11475_c0_g1_1263_TPlot.pdf
TRINITY_DN11475_c0_g1:1264	si_a774	TRINITY_DN11475_c0_g1	1253	1273	1264	-29.20	-19.50	0.667808219178082	10.5	4-12,1270-1262;14-21,1260-1253	1-3,1273-1271[UP5];13-13,1261-1261[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GAUGGAGGUGUUGGGUCGGAU&GAUUGAUUCAACUCUUCUAUU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN11475_c0_g1_1264_TPlot.pdf
TRINITY_DN11475_c0_g1:1440	si_s52	TRINITY_DN11475_c0_g1	1429	1449	1440	-31.30	-20.60	0.65814696485623	9.5	1-3,1449-1447;6-17,1444-1433	4-5,1446-1445[SIL];18-21,1432-1429[UP3]	....((((((((((((..(((&)))..))))))))))))....	UAUAGCUGACUUGAAAGACGA&UUGGAUUUCAAGUUAGCAACU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN11475_c0_g1_1440_TPlot.pdf
TRINITY_DN11475_c0_g1:1444	si_s48	TRINITY_DN11475_c0_g1	1433	1453	1444	-28.80	-22.00	0.763888888888889	8.5	3-7,1451-1447;10-21,1444-1433	1-2,1453-1452[UP5];8-9,1446-1445[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GCUGACUUGAAAGACGAUUUU&AUAAUUGGAUUUCAAGUUAGC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN11475_c0_g1_1444_TPlot.pdf
TRINITY_DN11475_c0_g1:1452	si_a67	TRINITY_DN11475_c0_g1	1441	1462	1452	-27.20	-18.82	0.691911764705882	9	1-6,1462-1457;10-21,1452-1441	7-9,1456-1453[AILt]	((((((((((((....((((((&))))))-...))))))))))))	GAAAGACGAUUUUCCUAGAAGC&GCUUCU-UUCAAAUUGUUUUUC	2	0.999673723702483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN11475_c0_g1_1452_TPlot.pdf
TRINITY_DN11479_c0_g1:2778	si_a404	TRINITY_DN11479_c0_g1	2767	2787	2778	-21.70	-14.20	0.654377880184332	10.5	1-3,2787-2785;5-16,2783-2772	4-4,2784-2784[SIL];17-21,2771-2767[UP3]	.....((((((((((((.(((&))).)))))))))))).....	UUGUGAUGAGCGAAACGUUUC&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN11479_c0_g1_2778_TPlot.pdf
TRINITY_DN1147_c0_g1:2160	si_s197	TRINITY_DN1147_c0_g1	2149	2174	2160	-29.20	-20.70	0.708904109589041	14	1-7,2174-2168;8-21,2162-2149	x-x,2167-2163[BULt]	((((((((((((((.....(((((((&)))))))-----))))))))))))))	AGCUGGUGCAUUUCUCAGAGGAAUAA&UUAUUUU-----GGAAUGUACCAGUU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN1147_c0_g1_2160_TPlot.pdf
TRINITY_DN11481_c0_g1:2237	si_a654	TRINITY_DN11481_c0_g1	2226	2247	2237	-31.70	-21.10	0.665615141955836	7.5	2-5,2246-2243;6-18,2241-2229	1-1,2247-2247[UP5];x-x,2242-2242[BULt];19-21,2228-2226[UP3]	...(((((((((((((.((((.&.))))-)))))))))))))...	ACAAGGUAUUUCCUGACUAUAA&AUAUA-UCGGGAAAUGCCUAUU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a654_TRINITY_DN11481_c0_g1_2237_TPlot.pdf
TRINITY_DN11481_c0_g1:2398	si_a787	TRINITY_DN11481_c0_g1	2386	2407	2398	-26.30	-18.40	0.699619771863118	7.5	1-4,2407-2404;6-14,2402-2394;15-20,2392-2387	5-5,2403-2403[SIL];x-x,2393-2393[BULt];21-21,2386-2386[UP3]	.((((((.(((((((((.((((&)))).)))))))))-)))))).	GGGAGAGUUGGAAGAAUUGAGG&CUUCUAUUUUUCUA-UUUUCCA	3	0.999999840065999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN11481_c0_g1_2398_TPlot.pdf
TRINITY_DN11481_c0_g1:2402	si_a783	TRINITY_DN11481_c0_g1	2391	2411	2402	-24.70	-16.50	0.668016194331984	10	3-8,2409-2404;10-18,2402-2394	1-2,2411-2410[UP5];9-9,2403-2403[SIL];19-21,2393-2391[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	AGUUGGAAGAAUUGAGGAGGA&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN11481_c0_g1_2402_TPlot.pdf
TRINITY_DN11482_c0_g1:163	si_a410	TRINITY_DN11482_c0_g1	152	176	163	-17.80	-11.80	0.662921348314607	15	1-6,176-171;7-19,166-154	x-x,170-167[BULt];20-21,153-152[UP3]	..(((((((((((((....((((((&))))))----)))))))))))))..	CCUAUUUAAGUAUAGUUUCGCAGGA&UUUUGU----UUAUAUUUAAAUAAA	4	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN11482_c0_g1_163_TPlot.pdf
TRINITY_DN11485_c1_g1:1304	si_a393	TRINITY_DN11485_c1_g1	1291	1313	1304	-22.70	-15.00	0.66079295154185	8	1-13,1313-1301;14-19,1298-1293	x-x,1300-1299[BULt];20-21,1292-1291[UP3]	..((((((..(((((((((((((&)))))))))))))--))))))..	ACAGCAGUAGUCUGUAUUUUUGA&UUAAGAAUAUAGA--AUUGUUUU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN11485_c1_g1_1304_TPlot.pdf
TRINITY_DN11489_c0_g2:1902	si_s1	TRINITY_DN11489_c0_g2	1891	1911	1902	-18.70	-13.20	0.705882352941176	10	1-8,1911-1904;11-18,1901-1894	9-10,1903-1902[SIL];19-21,1893-1891[UP3]	...((((((((..((((((((&))))))))..))))))))...	AACUGAUGAGUUUUAUGAAGA&UUUUUAUAUUACUUAUUAUUA	2	0.998491877366458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN11489_c0_g2_1902_TPlot.pdf
TRINITY_DN11489_c0_g2:2417	si_a784	TRINITY_DN11489_c0_g2	2406	2426	2417	-24.70	-16.70	0.676113360323887	8	2-7,2425-2420;9-17,2418-2410	1-1,2426-2426[UP5];8-8,2419-2419[SIL];18-21,2409-2406[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	AUUCUAGAAAAAUUGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.99999999911665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11489_c0_g2_2417_TPlot.pdf
TRINITY_DN1148_c0_g1:1871	si_a502	TRINITY_DN1148_c0_g1	1860	1880	1871	-32.10	-21.60	0.672897196261682	10	1-7,1880-1874;10-18,1871-1863	8-9,1873-1872[SIL];19-21,1862-1860[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	CGACCAAGGAAGUGGAGGAGC&GUUUUUCGUCUUCCUUGGAAU	3	0.999999999763962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1148_c0_g1_1871_TPlot.pdf
TRINITY_DN1148_c0_g1:2484	si_s259	TRINITY_DN1148_c0_g1	2473	2496	2484	-23.60	-15.90	0.673728813559322	9	2-6,2495-2491;7-19,2487-2475	1-1,2496-2496[UP5];x-x,2490-2488[BULt];20-21,2474-2473[UP3]	..(((((((((((((...(((((.&.)))))---)))))))))))))..	AAUUUUUUGAGUAAUUACAUAUCU&CGAUAU---AUUACUCAAAAAAAU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s259_TRINITY_DN1148_c0_g1_2484_TPlot.pdf
TRINITY_DN1148_c0_g1:4891	si_s795	TRINITY_DN1148_c0_g1	4880	4900	4891	-30.30	-19.90	0.656765676567657	11	3-6,4898-4895;8-13,4893-4888;15-20,4886-4881	1-2,4900-4899[UP5];7-7,4894-4894[SIL];14-14,4887-4887[SIL];21-21,4880-4880[UP3]	.((((((.((((((.((((..&..)))).)))))).)))))).	CCGAGGAGGGGGUAGGAGCAG&AAGCUCGUAUUUUAUCUUCGU	4	0.999996071852019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN1148_c0_g1_4891_TPlot.pdf
TRINITY_DN1148_c0_g1:5141	si_a407	TRINITY_DN1148_c0_g1	5130	5150	5141	-19.80	-13.20	0.666666666666667	11	1-13,5150-5138	14-21,5137-5130[UP3]	........(((((((((((((&)))))))))))))........	AGUUCUGGGUGAACAGAACAG&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1148_c0_g1_5141_TPlot.pdf
TRINITY_DN1148_c0_g1:5547	si_a467	TRINITY_DN1148_c0_g1	5535	5556	5547	-21.10	-14.00	0.663507109004739	8.5	2-11,5555-5546;14-21,5542-5535	1-1,5556-5556[UP5];12-13,5545-5543[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	GACAGUGAAACACAUAUUAUGC&AUAUAAUAUGU-AAUUAUUGUU	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN1148_c0_g1_5547_TPlot.pdf
TRINITY_DN11493_c0_g1:1990	si_a784	TRINITY_DN11493_c0_g1	1979	1999	1990	-24.70	-18.00	0.728744939271255	5.5	3-16,1997-1984;18-21,1982-1979	1-2,1999-1998[UP5];17-17,1983-1983[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AAGAAAGAAGAAUAGAAGAAG&ACUCUUCUAUUUUUCUAUUUU	4	0.999993281469884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11493_c0_g1_1990_TPlot.pdf
TRINITY_DN11494_c0_g1:1765	si_s771	TRINITY_DN11494_c0_g1	1754	1774	1765	-25.20	-16.40	0.650793650793651	12.5	5-18,1770-1757	1-4,1774-1771[UP5];19-21,1756-1754[UP3]	...((((((((((((((....&....))))))))))))))...	CUUUGGCAAUGGUGAUUUUGA&GAUUAAUUACUAUUGCUAUAA	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN11494_c0_g1_1765_TPlot.pdf
TRINITY_DN11494_c0_g1:498	si_a57	TRINITY_DN11494_c0_g1	487	507	498	-36.60	-24.00	0.655737704918033	9.5	1-10,507-498;12-16,496-492	11-11,497-497[SIL];17-21,491-487[UP3]	.....(((((.((((((((((&)))))))))).))))).....	AUAUUGGGGGGGAGUCGAUUC&GAGUCGACUCGCUUCUUUCAA	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN11494_c0_g1_498_TPlot.pdf
TRINITY_DN11494_c0_g1:670	si_a40	TRINITY_DN11494_c0_g1	657	679	670	-40.50	-26.40	0.651851851851852	7	1-5,679-675;7-15,673-665;16-20,662-658	6-6,674-674[SIL];x-x,664-663[BULt];21-21,657-657[UP3]	.(((((..(((((((((.(((((&))))).)))))))))--))))).	CCUCCUCGAGAUCUGCCUGUCUU&AAGACCGGUAGGUCU--AGGAGU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN11494_c0_g1_670_TPlot.pdf
TRINITY_DN11497_c0_g1:71	si_s880	TRINITY_DN11497_c0_g1	60	80	71	-26.70	-18.60	0.696629213483146	7.5	3-15,78-66;18-21,63-60	1-2,80-79[UP5];16-17,65-64[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GCCUUCUUGUUUUUGGUUUAU&UAGAACUAAAAAUAAAUAGGC	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s880_TRINITY_DN11497_c0_g1_71_TPlot.pdf
TRINITY_DN1149_c0_g1:1115	si_s482	TRINITY_DN1149_c0_g1	1104	1125	1115	-21.20	-14.40	0.679245283018868	7.5	1-3,1125-1123;4-17,1121-1108	x-x,1122-1122[BULt];18-21,1107-1104[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	AAUGUUGAAUAAAUAUGGUGAU&AUC-CUAUAUUUAUUUAAAUAU	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN1149_c0_g1_1115_TPlot.pdf
TRINITY_DN1149_c0_g1:963	si_a631	TRINITY_DN1149_c0_g1	952	972	963	-25.70	-18.50	0.719844357976654	5.5	1-19,972-954	20-21,953-952[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CACAAAAAGGUUGAUAUAAUA&UAUUAUGUCGAUUUUUUUGAG	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN1149_c0_g1_963_TPlot.pdf
TRINITY_DN114_c1_g1:1332	si_a862	TRINITY_DN114_c1_g1	1318	1341	1332	-22.70	-15.20	0.669603524229075	9	1-11,1341-1331;12-14,1328-1326;15-20,1324-1319	x-x,1330-1329[BULt];x-x,1325-1325[BULt];21-21,1318-1318[UP3]	.((((((.(((..(((((((((((&)))))))))))--)))-)))))).	AGAGUCUCUUAGUGUGAUUGGAUU&AAUCCAAUUAU--UAA-AGAUUUA	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN114_c1_g1_1332_TPlot.pdf
TRINITY_DN11504_c0_g1:1287	si_a406	TRINITY_DN11504_c0_g1	1275	1296	1287	-19.80	-13.20	0.666666666666667	11	3-13,1294-1284;14-19,1282-1277	1-2,1296-1295[UP5];x-x,1283-1283[BULt];20-21,1276-1275[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	ACUAAGUGUUGGACAAGACGGA&AUUGUUUUGUUUA-UAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN11504_c0_g1_1287_TPlot.pdf
TRINITY_DN11504_c0_g1:1515	si_a874	TRINITY_DN11504_c0_g1	1504	1524	1515	-26.70	-19.40	0.726591760299625	12	4-9,1521-1516;11-19,1514-1506	1-3,1524-1522[UP5];10-10,1515-1515[SIL];20-21,1505-1504[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	GGUGAUUGCAGGUGGAUCAAU&AAAGAUUUAGUUGCAAUCAAU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN11504_c0_g1_1515_TPlot.pdf
TRINITY_DN11505_c0_g1:116	si_s90	TRINITY_DN11505_c0_g1	105	129	116	-35.30	-23.30	0.660056657223796	13.5	1-5,129-125;6-12,120-114;14-20,112-106	x-x,124-121[BULt];13-13,113-113[SIL];21-21,105-105[UP3]	.(((((((.(((((((....(((((&)))))----))))))).))))))).	ACGAGGCGCGGGAGAAAACUGAGAG&CUUUC----UUCUUCUUCGCUUCGG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN11505_c0_g1_116_TPlot.pdf
TRINITY_DN11507_c0_g1:666	si_s803	TRINITY_DN11507_c0_g1	650	675	666	-26.00	-20.40	0.784615384615385	10	1-14,675-662;15-21,656-650	x-x,661-657[BULt]	(((((((.....((((((((((((((&))))))))))))))-----)))))))	GGAGGGUCGAGCAGCGAAGAUGGAGU&AUUUUAUCUUCGUU-----ACCUUUU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN11507_c0_g1_666_TPlot.pdf
TRINITY_DN11507_c0_g1:667	si_s802	TRINITY_DN11507_c0_g1	651	676	667	-26.40	-20.90	0.791666666666667	10	1-15,676-662;16-21,656-651	x-x,661-657[BULt]	((((((.....(((((((((((((((&)))))))))))))))-----))))))	GAGGGUCGAGCAGCGAAGAUGGAGUG&UAUUUUAUCUUCGUU-----ACCUUU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN11507_c0_g1_667_TPlot.pdf
TRINITY_DN11509_c0_g1:3877	si_a453	TRINITY_DN11509_c0_g1	3866	3886	3877	-21.10	-14.50	0.687203791469194	3	1-12,3886-3875;14-21,3873-3866	13-13,3874-3874[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AUUAUAUAGAAUAAUAAUUAU&AUAAUUGUUGUUAUAUAUAAU	2	0.998291993200065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN11509_c0_g1_3877_TPlot.pdf
TRINITY_DN1150_c0_g1:242	si_s79	TRINITY_DN1150_c0_g1	231	251	242	-26.20	-17.80	0.679389312977099	13.5	5-8,247-244;11-20,241-232	1-4,251-248[UP5];9-10,243-242[SIL];21-21,231-231[UP3]	.((((((((((..((((....&....))))..)))))))))).	UGGAAGAAAGGUUAGGACCAU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1150_c0_g1_242_TPlot.pdf
TRINITY_DN1150_c0_g1:35	si_s77	TRINITY_DN1150_c0_g1	24	44	35	-25.50	-17.20	0.674509803921569	5	1-12,44-33;15-21,30-24	13-14,32-31[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAAAAGAAGAAAGAAGA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1150_c0_g1_35_TPlot.pdf
TRINITY_DN11510_c0_g1:209	si_s70	TRINITY_DN11510_c0_g1	198	219	209	-25.80	-17.70	0.686046511627907	9.5	4-9,216-211;11-21,208-198	1-3,219-217[UP5];10-10,210-209[AILt]	(((((((((((..((((((...&...))))))-.)))))))))))	GGAAAGAGAAACUAAUAGAUUG&ACUUCUAUU-UUUUUUCUUUCC	2	0.999999999893529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN11510_c0_g1_209_TPlot.pdf
TRINITY_DN11510_c0_g1:797	si_a325	TRINITY_DN11510_c0_g1	786	806	797	-25.90	-16.90	0.652509652509653	10	4-9,803-798;11-20,796-787	1-3,806-804[UP5];10-10,797-797[SIL];21-21,786-786[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	CCAAGGGGUGAUAAAAUCUUU&CAUGAUUUUUUUAUUCCUUGU	4	0.999999988594043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN11510_c0_g1_797_TPlot.pdf
TRINITY_DN11510_c0_g1:943	si_a353	TRINITY_DN11510_c0_g1	932	952	943	-24.00	-16.50	0.6875	5.5	1-6,952-947;8-12,945-941;15-21,938-932	7-7,946-946[SIL];13-14,940-939[SIL]	(((((((..(((((.((((((&)))))).)))))..)))))))	UGAUCAAUUUAGAAAUAAUGU&AUAUUAAUUCUAUUUUGAUCG	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN11510_c0_g1_943_TPlot.pdf
TRINITY_DN11512_c0_g1:1000	si_s69	TRINITY_DN11512_c0_g1	989	1009	1000	-23.40	-15.90	0.67948717948718	8.5	4-20,1006-990	1-3,1009-1007[UP5];21-21,989-989[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAGGAAGGAAAAUAGAGAUG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11512_c0_g1_1000_TPlot.pdf
TRINITY_DN11512_c0_g1:1283	si_a899	TRINITY_DN11512_c0_g1	1272	1292	1283	-18.70	-12.80	0.684491978609626	10.5	5-18,1288-1275	1-4,1292-1289[UP5];19-21,1274-1272[UP3]	...((((((((((((((....&....))))))))))))))...	GUCUUGUAUUACUUAUUCAAC&UAAUAAUAAGUAAUAUAAAAA	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN11512_c0_g1_1283_TPlot.pdf
TRINITY_DN11512_c0_g1:2841	si_a72	TRINITY_DN11512_c0_g1	2825	2850	2841	-21.90	-16.80	0.767123287671233	14	1-11,2850-2840;12-21,2834-2825	x-x,2839-2835[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	AUAGUGAAGAAGGCAGCGAUUUGGAA&UUUCAAAUUGU-----UUUUCAUUAU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN11512_c0_g1_2841_TPlot.pdf
TRINITY_DN11512_c0_g1:2842	si_a71	TRINITY_DN11512_c0_g1	2826	2851	2842	-23.30	-15.70	0.67381974248927	15	2-12,2850-2840;13-21,2834-2826	1-1,2851-2851[UP5];x-x,2839-2835[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	UAGUGAAGAAGGCAGCGAUUUGGAAC&CUUUCAAAUUGU-----UUUUCAUUA	3	0.999999999309844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN11512_c0_g1_2842_TPlot.pdf
TRINITY_DN11512_c0_g1:427	si_a72	TRINITY_DN11512_c0_g1	416	436	427	-21.90	-14.70	0.671232876712329	9	4-7,433-430;9-20,428-417	1-3,436-434[UP5];8-8,429-429[SIL];21-21,416-416[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	CUGAUGGAAAACAUUUUGCAG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999973058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN11512_c0_g1_427_TPlot.pdf
TRINITY_DN11512_c0_g1:994	si_s79	TRINITY_DN11512_c0_g1	983	1003	994	-26.20	-19.00	0.725190839694656	7	3-14,1001-990;16-19,988-985	1-2,1003-1002[UP5];15-15,989-989[SIL];20-21,984-983[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	AUGAAGUAAGGAAGGAAAAUA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11512_c0_g1_994_TPlot.pdf
TRINITY_DN11512_c0_g1:996	si_s73	TRINITY_DN11512_c0_g1	985	1005	996	-24.00	-18.20	0.758333333333333	4	1-16,1005-990;18-21,988-985	17-17,989-989[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GAAGUAAGGAAGGAAAAUAGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999999872350051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11512_c0_g1_996_TPlot.pdf
TRINITY_DN11513_c0_g1:1255	si_a599	TRINITY_DN11513_c0_g1	1244	1265	1255	-30.40	-21.70	0.713815789473684	6	3-5,1263-1261;6-21,1259-1244	1-2,1265-1264[UP5];x-x,1260-1260[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	UUGGAAUUGUGAAAAUAUCUAU&ACAGA-AUUUUCGCAAUUCCAA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN11513_c0_g1_1255_TPlot.pdf
TRINITY_DN11513_c0_g1:1291	si_a69	TRINITY_DN11513_c0_g1	1280	1300	1291	-24.00	-17.48	0.728333333333333	6.5	1-7,1300-1294;11-21,1290-1280	8-10,1293-1291[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	GUGAAAAACAAACAGAAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN11513_c0_g1_1291_TPlot.pdf
TRINITY_DN11514_c0_g1:1044	si_s69	TRINITY_DN11514_c0_g1	1031	1053	1044	-23.40	-15.60	0.666666666666667	8	4-14,1050-1040;15-21,1037-1031	1-3,1053-1051[UP5];x-x,1039-1038[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GAAGGAACAGAAAAAUAGAAAAG&AACUUCUAUUUUUU--UUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11514_c0_g1_1044_TPlot.pdf
TRINITY_DN11514_c0_g1:2009	si_s820	TRINITY_DN11514_c0_g1	1998	2018	2009	-22.10	-15.30	0.692307692307692	11	7-21,2012-1998	1-6,2018-2013[UP5]	(((((((((((((((......&......)))))))))))))))	UGUUUUUCAUUAUUACCGUCU&UUUUCUUAAUAAUGAAAAACA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN11514_c0_g1_2009_TPlot.pdf
TRINITY_DN11514_c0_g1:2125	si_a6	TRINITY_DN11514_c0_g1	2114	2134	2125	-29.10	-20.20	0.694158075601375	6.5	1-6,2134-2129;8-18,2127-2117	7-7,2128-2128[SIL];19-21,2116-2114[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UGCAGGUUUUCUCUACGAUUU&AAAUUGAAGAGAAAGCCUAUU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN11514_c0_g1_2125_TPlot.pdf
TRINITY_DN11514_c0_g1:434	si_a546	TRINITY_DN11514_c0_g1	423	443	434	-28.60	-18.70	0.653846153846154	10.5	2-10,442-434;13-21,431-423	1-1,443-443[UP5];11-12,433-432[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	GAUGGAGGAUGGGGUUGGAUG&GGUUCAAUCUAUUUCUUUAUC	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN11514_c0_g1_434_TPlot.pdf
TRINITY_DN11514_c0_g1:64	si_a350	TRINITY_DN11514_c0_g1	53	73	64	-20.30	-13.70	0.67487684729064	5	1-9,73-65;11-20,63-54	10-10,64-64[SIL];21-21,53-53[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AUAAAAUGGAAGUAGUAUUUU&AAAAUAUUAAUUCUAUUUUGA	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN11514_c0_g1_64_TPlot.pdf
TRINITY_DN11515_c0_g1:1614	si_s77	TRINITY_DN11515_c0_g1	1603	1623	1614	-25.50	-18.40	0.72156862745098	6	1-4,1623-1620;6-18,1618-1606	5-5,1619-1619[SIL];19-21,1605-1603[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AAUGAAAGGAAAGAAACAAGA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11515_c0_g1_1614_TPlot.pdf
TRINITY_DN11515_c0_g1:1615	si_s76	TRINITY_DN11515_c0_g1	1604	1626	1615	-23.60	-18.50	0.783898305084746	8	1-7,1626-1620;8-19,1617-1606	x-x,1619-1618[BULt];20-21,1605-1604[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	AUGAAAGGAAAGAAACAAGAAGU&AUUUUUU--UUCUUUCCUUUCUU	4	0.999999999534866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11515_c0_g1_1615_TPlot.pdf
TRINITY_DN11517_c0_g1:727	si_a19	TRINITY_DN11517_c0_g1	716	736	727	-27.00	-18.00	0.666666666666667	8	2-10,735-727;13-13,724-724;16-21,721-716	1-1,736-736[UP5];11-12,726-725[SIL];14-15,723-722[SIL]	((((((..(..(((((((((.&.)))))))))..)..))))))	AGAACUUUAUUUAAAUAGGUA&AGCCUAUUUAUUUUUAGUUCU	4	0.99999174108694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN11517_c0_g1_727_TPlot.pdf
TRINITY_DN1151_c0_g1:154	si_a899	TRINITY_DN1151_c0_g1	142	163	154	-18.70	-12.50	0.668449197860963	5.5	1-12,163-152;14-19,149-144	13-13,151-150[AILt];20-21,143-142[UP3]	..((((((..((((((((((((&))))))))))))-.))))))..	AAUUUGUAAAUACUUAUUAUUA&UAAUAAUAAGUA-AUAUAAAAA	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1151_c0_g1_154_TPlot.pdf
TRINITY_DN1151_c0_g1:158	si_a895	TRINITY_DN1151_c0_g1	147	167	158	-21.70	-14.30	0.658986175115207	10	4-16,164-152	1-3,167-165[UP5];17-21,151-147[UP3]	.....(((((((((((((...&...))))))))))))).....	GUAAAUACUUAUUAUUACAAA&AUAGUAAUAAUAAGUAAUAUA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN1151_c0_g1_158_TPlot.pdf
TRINITY_DN1151_c0_g1:160	si_a893	TRINITY_DN1151_c0_g1	149	169	160	-21.70	-14.30	0.658986175115207	12	6-18,164-152	1-5,169-165[UP5];19-21,151-149[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAUACUUAUUAUUACAAAUA&AUAUAGUAAUAAUAAGUAAUA	2	0.967779006855436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN1151_c0_g1_160_TPlot.pdf
TRINITY_DN1151_c0_g1:2457	si_s42	TRINITY_DN1151_c0_g1	2444	2466	2457	-24.90	-16.80	0.674698795180723	10.5	1-12,2466-2455;13-19,2452-2446	x-x,2454-2453[BULt];20-21,2445-2444[UP3]	..(((((((..((((((((((((&))))))))))))--)))))))..	ACGAAAUCUAUGAUUAUUGGGGA&UCUUUAAUAAUU--GGAUUUCAA	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN1151_c0_g1_2457_TPlot.pdf
TRINITY_DN11524_c0_g2:236	si_s435	TRINITY_DN11524_c0_g2	221	245	236	-20.90	-14.88	0.711961722488038	11.5	1-12,245-234;14-21,228-221	13-13,233-229[AILt]	((((((((.....((((((((((((&))))))))))))----.))))))))	AUAUGUAAAAAUAAUGUAGUUGUUG&CAAUAAUUACAU----AUUAUAUAU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN11524_c0_g2_236_TPlot.pdf
TRINITY_DN11533_c0_g1:2575	si_a65	TRINITY_DN11533_c0_g1	2564	2584	2575	-27.70	-18.40	0.664259927797834	8.5	1-11,2584-2574;14-16,2571-2569;18-21,2567-2564	12-13,2573-2572[SIL];17-17,2568-2568[SIL]	((((.(((..(((((((((((&)))))))))))..))).))))	GGAGGGAUGCGGAAGAGGCGG&UCGCUUCUUUCAAAUUGUUUU	2	0.999987009841749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN11533_c0_g1_2575_TPlot.pdf
TRINITY_DN11533_c0_g1:2579	si_a61	TRINITY_DN11533_c0_g1	2568	2587	2579	-32.90	-21.70	0.659574468085106	9.5	1-4,2587-2584;6-15,2583-2574	5-5,x-x[BULq];16-21,2573-2568[UP3]	......((((((((((-((((&)))).))))))))))......	GGAUGCGGAAGAGGCG-GUCG&CGACUCGCUUCUUUCAAAUUG	0	0.110031498404527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN11533_c0_g1_2579_TPlot.pdf
TRINITY_DN11533_c0_g1:2580	si_a60	TRINITY_DN11533_c0_g1	2569	2588	2580	-32.20	-23.10	0.717391304347826	8.5	1-5,2588-2584;7-16,2583-2574	6-6,x-x[BULq];17-21,2573-2569[UP3]	.....((((((((((-(((((&))))).)))))))))).....	GAUGCGGAAGAGGCG-GUCGA&UCGACUCGCUUCUUUCAAAUU	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN11533_c0_g1_2580_TPlot.pdf
TRINITY_DN11533_c0_g1:2581	si_a59	TRINITY_DN11533_c0_g1	2570	2589	2581	-34.00	-26.60	0.782352941176471	7.5	1-6,2589-2584;8-17,2583-2574	7-7,x-x[BULq];18-21,2573-2570[UP3]	....((((((((((-((((((&)))))).))))))))))....	AUGCGGAAGAGGCG-GUCGAC&GUCGACUCGCUUCUUUCAAAU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN11533_c0_g1_2581_TPlot.pdf
TRINITY_DN11536_c0_g1:54	si_a47	TRINITY_DN11536_c0_g1	42	63	54	-41.20	-28.20	0.684466019417476	7.5	1-4,63-60;6-17,58-47;18-21,45-42	5-5,59-59[SIL];x-x,46-46[BULt]	((((.((((((((((((.((((&)))).))))))))))))-))))	UGGGUUCGAUUCCUGGAGUUGC&GUAGGUCUAGGAGUCGA-CUCG	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN11536_c0_g1_54_TPlot.pdf
TRINITY_DN11538_c1_g1:1049	si_s315	TRINITY_DN11538_c1_g1	1038	1059	1049	-31.60	-21.00	0.664556962025316	10	2-7,1058-1053;8-17,1051-1042	1-1,1059-1059[UP5];x-x,1052-1052[BULt];18-21,1041-1038[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	GAUGGACGAGGAGGUGCAGAAG&AUUCUGU-CCUUCUUGUUACAA	4	0.999997117861142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN11538_c1_g1_1049_TPlot.pdf
TRINITY_DN11539_c0_g1:1409	si_a595	TRINITY_DN11539_c0_g1	1398	1418	1409	-30.30	-20.00	0.66006600660066	9.5	2-9,1417-1410;11-17,1408-1402	1-1,1418-1418[UP5];10-10,1409-1409[SIL];18-21,1401-1398[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	UCUAGCGAGGAAUCUGUUCUC&AAGGACAGAAUUUUCGCAAUU	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN11539_c0_g1_1409_TPlot.pdf
TRINITY_DN11539_c0_g1:1643	si_a616	TRINITY_DN11539_c0_g1	1632	1653	1643	-34.70	-22.70	0.654178674351585	5.5	1-8,1653-1646;9-15,1644-1638;18-21,1635-1632	x-x,1645-1645[BULt];16-17,1637-1636[SIL]	((((..(((((((.((((((((&))))))))-)))))))..))))	AUAAGGUGCUUAGUUCGAUUGG&CCAAUCGA-CUAGGCGUAUUAU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a616_TRINITY_DN11539_c0_g1_1643_TPlot.pdf
TRINITY_DN11540_c0_g1:1440	si_s496	TRINITY_DN11540_c0_g1	1429	1449	1440	-21.70	-15.50	0.714285714285714	3	1-9,1449-1441;11-13,1439-1437;15-21,1435-1429	10-10,1440-1440[SIL];14-14,1436-1436[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	GAAUUGUAUUGAUUAUAUUUA&UAAAUAUAAACAAAACAAUUC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN11540_c0_g1_1440_TPlot.pdf
TRINITY_DN11540_c0_g1:1441	si_s495	TRINITY_DN11540_c0_g1	1430	1450	1441	-19.80	-13.20	0.666666666666667	3	1-10,1450-1441;12-14,1439-1437;16-21,1435-1430	11-11,1440-1440[SIL];15-15,1436-1436[SIL]	((((((.(((.((((((((((&)))))))))).))).))))))	AAUUGUAUUGAUUAUAUUUAA&UUAAAUAUAAACAAAACAAUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN11540_c0_g1_1441_TPlot.pdf
TRINITY_DN11540_c0_g1:1512	si_s483	TRINITY_DN11540_c0_g1	1501	1526	1512	-21.40	-14.10	0.658878504672897	15.5	1-6,1526-1521;7-19,1515-1503	x-x,1520-1516[BULt];20-21,1502-1501[UP3]	..(((((((((((((.....((((((&))))))-----)))))))))))))..	ACUGUUUAAGUAAAUUUCUCGUGGGA&UCCUAU-----AUUUAUUUAAAUAUA	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN11540_c0_g1_1512_TPlot.pdf
TRINITY_DN11540_c0_g1:1513	si_s482	TRINITY_DN11540_c0_g1	1502	1527	1513	-21.20	-15.40	0.726415094339623	14	1-7,1527-1521;8-20,1515-1503	x-x,1520-1516[BULt];21-21,1502-1502[UP3]	.(((((((((((((.....(((((((&)))))))-----))))))))))))).	CUGUUUAAGUAAAUUUCUCGUGGGAU&AUCCUAU-----AUUUAUUUAAAUAU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN11540_c0_g1_1513_TPlot.pdf
TRINITY_DN11540_c0_g1:1514	si_s481	TRINITY_DN11540_c0_g1	1503	1528	1514	-23.00	-15.70	0.682608695652174	14	2-8,1527-1521;9-21,1515-1503	1-1,1528-1528[UP5];x-x,1520-1516[BULt]	(((((((((((((.....(((((((.&.)))))))-----)))))))))))))	UGUUUAAGUAAAUUUCUCGUGGGAUG&GAUCCUAU-----AUUUAUUUAAAUA	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN11540_c0_g1_1514_TPlot.pdf
TRINITY_DN11540_c0_g1:184	si_a67	TRINITY_DN11540_c0_g1	173	193	184	-27.20	-21.70	0.797794117647059	6	1-14,193-180;16-20,178-174	15-15,179-179[SIL];21-21,173-173[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CGAAAAGAGUUUGAGGGAGGC&GCUUCUUUCAAAUUGUUUUUC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN11540_c0_g1_184_TPlot.pdf
TRINITY_DN1154_c0_g1:1279	si_a784	TRINITY_DN1154_c0_g1	1268	1289	1279	-24.70	-16.50	0.668016194331984	7.5	2-7,1288-1283;8-13,1281-1276;15-21,1274-1268	1-1,1289-1289[UP5];x-x,1282-1282[BULt];14-14,1275-1275[SIL]	(((((((.((((((.((((((.&.))))))-)))))).)))))))	AGGAUGGUAGAGUAUGAAGAGG&ACUCUUC-UAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1154_c0_g1_1279_TPlot.pdf
TRINITY_DN1154_c0_g1:2267	si_a449	TRINITY_DN1154_c0_g1	2256	2276	2267	-25.70	-18.56	0.722178988326848	11.5	1-6,2276-2271;11-20,2266-2257	7-10,2270-2267[SIL];21-21,2256-2256[UP3]	.((((((((((....((((((&))))))....)))))))))).	CAUAUGACAGCUGAGGUCUCA&UGAGAUAAUUGUUGUUAUAUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN1154_c0_g1_2267_TPlot.pdf
TRINITY_DN1154_c0_g1:4917	si_a412	TRINITY_DN1154_c0_g1	4907	4926	4917	-18.30	-12.00	0.655737704918033	4	1-12,4926-4915;15-20,4913-4908	13-14,4914-4914[AILq];21-21,4907-4907[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	GAUUUAUA-AAAUAUAAGCAA&UUGUUUAUAUUUAAAUAAAUA	3	0.999999967025317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN1154_c0_g1_4917_TPlot.pdf
TRINITY_DN1154_c0_g1:4918	si_a411	TRINITY_DN1154_c0_g1	4908	4927	4918	-17.90	-12.50	0.698324022346369	3	1-13,4927-4915;16-21,4913-4908	14-15,4914-4914[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	AUUUAUA-AAAUAUAAGCAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.999985579703665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1154_c0_g1_4918_TPlot.pdf
TRINITY_DN1154_c0_g1:4919	si_a410	TRINITY_DN1154_c0_g1	4909	4928	4919	-17.80	-12.00	0.674157303370786	3	1-14,4928-4915;17-21,4913-4909	15-16,4914-4914[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UUUAUA-AAAUAUAAGCAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1154_c0_g1_4919_TPlot.pdf
TRINITY_DN1154_c0_g1:4920	si_a409	TRINITY_DN1154_c0_g1	4909	4929	4920	-19.50	-15.40	0.78974358974359	7	1-15,4929-4915	16-21,4914-4909[UP3]	......(((((((((((((((&)))))))))))))))......	UUUAUAAAAUAUAAGCAAAAC&GUUUUGUUUAUAUUUAAAUAA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1154_c0_g1_4920_TPlot.pdf
TRINITY_DN1154_c0_g1:4925	si_a404	TRINITY_DN1154_c0_g1	4914	4934	4925	-21.70	-17.10	0.788018433179724	4.5	1-3,4934-4932;5-20,4930-4915	4-4,4931-4931[SIL];21-21,4914-4914[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	AAAAUAUAAGCAAAACAUUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1154_c0_g1_4925_TPlot.pdf
TRINITY_DN1154_c0_g1:6975	si_a286	TRINITY_DN1154_c0_g1	6964	6984	6975	-28.30	-18.80	0.664310954063604	11	2-13,6983-6972	1-1,6984-6984[UP5];14-21,6971-6964[UP3]	........((((((((((((.&.))))))))))))........	UCUUCUGUAUCCGAGUGAUCA&AGAUCGCUUGGAUUUAAAAAA	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN1154_c0_g1_6975_TPlot.pdf
TRINITY_DN1154_c0_g1:6976	si_a285	TRINITY_DN1154_c0_g1	6965	6985	6976	-28.30	-18.80	0.664310954063604	12	3-14,6983-6972	1-2,6985-6984[UP5];15-21,6971-6965[UP3]	.......((((((((((((..&..)))))))))))).......	CUUCUGUAUCCGAGUGAUCAC&AAGAUCGCUUGGAUUUAAAAA	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN1154_c0_g1_6976_TPlot.pdf
TRINITY_DN1154_c0_g1:6977	si_a284	TRINITY_DN1154_c0_g1	6966	6986	6977	-28.30	-18.80	0.664310954063604	13	4-15,6983-6972	1-3,6986-6984[UP5];16-21,6971-6966[UP3]	......((((((((((((...&...))))))))))))......	UUCUGUAUCCGAGUGAUCACU&AAAGAUCGCUUGGAUUUAAAA	2	0.997966876744423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN1154_c0_g1_6977_TPlot.pdf
TRINITY_DN1154_c0_g1:6978	si_a283	TRINITY_DN1154_c0_g1	6967	6987	6978	-28.30	-18.80	0.664310954063604	14	5-16,6983-6972	1-4,6987-6984[UP5];17-21,6971-6967[UP3]	.....((((((((((((....&....)))))))))))).....	UCUGUAUCCGAGUGAUCACUC&AAAAGAUCGCUUGGAUUUAAA	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN1154_c0_g1_6978_TPlot.pdf
TRINITY_DN1154_c1_g1:1020	si_s485	TRINITY_DN1154_c1_g1	1010	1029	1020	-18.10	-13.20	0.729281767955801	6.5	1-10,1029-1020;13-20,1018-1011	11-12,1019-1019[AILq];21-21,1010-1010[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	CUUAUGUUUU-AUAGAUAUAG&CUAUAUUUAUUUAAAUAUAAA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1154_c1_g1_1020_TPlot.pdf
TRINITY_DN1154_c1_g2:62	si_a188	TRINITY_DN1154_c1_g2	48	70	62	-32.00	-22.50	0.703125	7.5	1-4,70-67;6-15,66-57;16-20,53-49	5-5,x-x[BULq];x-x,56-54[BULt];21-21,48-48[UP3]	.(((((...((((((((((-((((&)))).))))))))))---))))).	GGGUGAAAUACAGGGAGAG-UAUU&AAUAUCUUUCCCUGU---UCACUA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN1154_c1_g2_62_TPlot.pdf
TRINITY_DN1154_c3_g1:2742	si_a633	TRINITY_DN1154_c3_g1	2732	2751	2742	-26.40	-17.60	0.666666666666667	6.5	4-15,2748-2737;17-21,2736-2732	1-3,2751-2749[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	UACUU-AAAAAAUCGACAACA&UUAUGUCGAUUUUUUUGAGUA	4	0.999999998145513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1154_c3_g1_2742_TPlot.pdf
TRINITY_DN11550_c0_g1:232	si_a544	TRINITY_DN11550_c0_g1	221	240	232	-28.90	-19.80	0.685121107266436	10	1-7,240-234;11-19,231-223	8-10,233-232[AILq];20-21,222-221[UP3]	..(((((((((..-(((((((&)))))))...)))))))))..	GCGAGAGAUAGUC-GAGCCGA&UCGGUUCAAUCUAUUUCUUUA	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN11550_c0_g1_232_TPlot.pdf
TRINITY_DN11550_c0_g1:667	si_a140	TRINITY_DN11550_c0_g1	656	675	667	-25.20	-19.70	0.781746031746032	8	1-6,675-670;9-21,668-656	7-8,669-669[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GAAGCGGCAGCGAA-AAUUGC&GUAAUUAAUCGUUGUUGUUUU	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN11550_c0_g1_667_TPlot.pdf
TRINITY_DN11550_c0_g1:668	si_a139	TRINITY_DN11550_c0_g1	657	676	668	-25.90	-18.60	0.718146718146718	8	2-7,675-670;10-21,668-657	1-1,676-676[UP5];8-9,669-669[AILq]	((((((((((((.-((((((.&.))))))..))))))))))))	AAGCGGCAGCGAA-AAUUGCG&AGUAAUUAAUCGUUGUUGUUU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN11550_c0_g1_668_TPlot.pdf
TRINITY_DN11550_c0_g1:864	si_s841	TRINITY_DN11550_c0_g1	854	872	864	-34.00	-22.10	0.65	8	1-9,872-864;12-21,863-854	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GUUGAUUCGC--CUUUCGGGU&AUUUGAAAGAAGCGAGUCGAC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s841_TRINITY_DN11550_c0_g1_864_TPlot.pdf
TRINITY_DN11551_c0_g1:1592	si_s773	TRINITY_DN11551_c0_g1	1581	1601	1592	-23.10	-15.30	0.662337662337662	14	4-15,1598-1587	1-3,1601-1599[UP5];16-21,1586-1581[UP3]	......((((((((((((...&...))))))))))))......	CAUGGAAGCAGUGGUGAUGAG&UUAAUUACUAUUGCUAUAAAA	4	0.999997970858953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN11551_c0_g1_1592_TPlot.pdf
TRINITY_DN11551_c0_g1:4326	si_s628	TRINITY_DN11551_c0_g1	4315	4337	4326	-35.40	-23.70	0.669491525423729	8.5	1-2,4337-4336;3-6,4334-4331;7-14,4329-4322;16-19,4320-4317	x-x,4335-4335[BULt];x-x,4330-4330[BULt];15-15,4321-4321[SIL];20-21,4316-4315[UP3]	..((((.((((((((.((((.((&))-))))-)))))))).))))..	ACACGCGUGCGAAAGUGAUCUGC&GC-GAUC-UUUUCGUAGGCGUUU	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN11551_c0_g1_4326_TPlot.pdf
TRINITY_DN11563_c0_g1:329	si_a774	TRINITY_DN11563_c0_g1	318	338	329	-29.20	-19.30	0.660958904109589	6	1-7,338-332;9-16,330-323;18-20,321-319	8-8,331-331[SIL];17-17,322-322[SIL];21-21,318-318[UP3]	.(((.((((((((.(((((((&))))))).)))))))).))).	CAUAAGGGAGUUGCGUCAAUC&GAUUGAUUCAACUCUUCUAUU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN11563_c0_g1_329_TPlot.pdf
TRINITY_DN11565_c0_g1:1486	si_a449	TRINITY_DN11565_c0_g1	1475	1494	1486	-25.70	-17.00	0.66147859922179	11	1-5,1494-1490;11-21,1485-1475	6-10,1489-1486[AILq]	(((((((((((....-(((((&))))).....)))))))))))	UGUAUAACGACUGAU-UCUCA&UGAGAUAAUUGUUGUUAUAUA	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN11565_c0_g1_1486_TPlot.pdf
TRINITY_DN11565_c0_g1:322	si_a501	TRINITY_DN11565_c0_g1	306	331	322	-33.50	-22.20	0.662686567164179	13.5	2-12,330-320;13-21,314-306	1-1,331-331[UP5];x-x,319-315[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	UUUCAAGGAGAAGUAGACGAAGAAUU&CGUUUUUCGUCU-----UCCUUGGAA	2	0.99999950177275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN11565_c0_g1_322_TPlot.pdf
TRINITY_DN11569_c0_g1:2743	si_a626	TRINITY_DN11569_c0_g1	2732	2752	2743	-30.20	-21.60	0.71523178807947	7.5	2-16,2751-2737	1-1,2752-2752[UP5];17-21,2736-2732[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACUGCUUGACAUAAUACGCUC&AGGCGUAUUAUGUCGAUUUUU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN11569_c0_g1_2743_TPlot.pdf
TRINITY_DN11569_c0_g1:2744	si_a625	TRINITY_DN11569_c0_g1	2733	2753	2744	-30.60	-21.60	0.705882352941177	8.5	3-17,2751-2737	1-2,2753-2752[UP5];18-21,2736-2733[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUGCUUGACAUAAUACGCUCA&UAGGCGUAUUAUGUCGAUUUU	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN11569_c0_g1_2744_TPlot.pdf
TRINITY_DN11569_c0_g1:2745	si_a624	TRINITY_DN11569_c0_g1	2734	2754	2745	-32.30	-21.60	0.668730650154799	9.5	4-18,2751-2737	1-3,2754-2752[UP5];19-21,2736-2734[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGCUUGACAUAAUACGCUCAU&CUAGGCGUAUUAUGUCGAUUU	0	0.0783119158061402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN11569_c0_g1_2745_TPlot.pdf
TRINITY_DN11569_c0_g1:2746	si_a623	TRINITY_DN11569_c0_g1	2735	2755	2746	-33.10	-21.60	0.652567975830816	10.5	5-19,2751-2737	1-4,2755-2752[UP5];20-21,2736-2735[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCUUGACAUAAUACGCUCAUG&ACUAGGCGUAUUAUGUCGAUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN11569_c0_g1_2746_TPlot.pdf
TRINITY_DN11578_c0_g1:2197	si_s72	TRINITY_DN11578_c0_g1	2186	2206	2197	-24.10	-16.90	0.701244813278008	9	1-5,2206-2202;7-18,2200-2189	6-6,2201-2201[SIL];19-21,2188-2186[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CUCGAAAGAGAGAGAUUGGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11578_c0_g1_2197_TPlot.pdf
TRINITY_DN1157_c0_g1:1059	si_s81	TRINITY_DN1157_c0_g1	1047	1068	1059	-28.90	-20.90	0.72318339100346	6.5	2-16,1067-1053;18-20,1050-1048	1-1,1068-1068[UP5];17-17,1052-1051[AILt];21-21,1047-1047[UP3]	.(((..(((((((((((((((.&.)))))))))))))))-.))).	UGAAAAGAGAGAGGAGAGAAAG&UUUUCUUUCCUUUCUU-CUUCU	4	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1157_c0_g1_1059_TPlot.pdf
TRINITY_DN1157_c0_g1:1060	si_s80	TRINITY_DN1157_c0_g1	1050	1069	1060	-28.20	-22.10	0.783687943262411	4.5	1-16,1069-1054;18-20,1053-1051	17-17,x-x[BULq];21-21,1050-1050[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	AAAG-AGAGAGGAGAGAAAGA&UUUUUCUUUCCUUUCUUCUUC	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1157_c0_g1_1060_TPlot.pdf
TRINITY_DN1157_c0_g1:1061	si_s79	TRINITY_DN1157_c0_g1	1051	1070	1061	-26.20	-22.30	0.851145038167939	4.5	2-17,1069-1054;19-21,1053-1051	1-1,1070-1070[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	AAG-AGAGAGGAGAGAAAGAU&UUUUUUCUUUCCUUUCUUCUU	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1157_c0_g1_1061_TPlot.pdf
TRINITY_DN1157_c0_g1:1063	si_s77	TRINITY_DN1157_c0_g1	1052	1072	1063	-25.50	-22.00	0.862745098039216	9	4-20,1069-1053	1-3,1072-1070[UP5];21-21,1052-1052[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGAGAGAGGAGAGAAAGAUGG&UUUUUUUUCUUUCCUUUCUUC	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1157_c0_g1_1063_TPlot.pdf
TRINITY_DN1157_c0_g1:397	si_a24	TRINITY_DN1157_c0_g1	385	406	397	-24.20	-16.10	0.665289256198347	9	3-13,404-394;14-20,392-386	1-2,406-405[UP5];x-x,393-393[BULt];21-21,385-385[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UUCUUGGAUGCUAAGGGUAAUG&AUUUAUUUUUAGU-UCUAAGAC	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN1157_c0_g1_397_TPlot.pdf
TRINITY_DN1157_c0_g1:689	si_s72	TRINITY_DN1157_c0_g1	678	697	689	-24.10	-17.30	0.717842323651452	6.5	1-3,697-695;6-21,693-678	4-5,694-694[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	AAGGGAAGAAAGAAAGC-GAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1157_c0_g1_689_TPlot.pdf
TRINITY_DN1157_c0_g1:691	si_s70	TRINITY_DN1157_c0_g1	680	699	691	-25.80	-18.00	0.697674418604651	7.5	2-5,698-695;8-21,693-680	1-1,699-699[UP5];6-7,694-694[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	GGGAAGAAAGAAAGC-GAAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999998896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1157_c0_g1_691_TPlot.pdf
TRINITY_DN1157_c0_g1:692	si_s82	TRINITY_DN1157_c0_g1	680	701	692	-28.90	-19.50	0.674740484429066	6	1-7,701-695;9-15,693-687;16-21,685-680	8-8,694-694[SIL];x-x,686-686[BULt]	((((((.(((((((.(((((((&))))))).)))))))-))))))	GGGAAGAAAGAAAGCGAAGAGA&UUUCUUUCCUUUCUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1157_c0_g1_692_TPlot.pdf
TRINITY_DN1157_c0_g1:694	si_s80	TRINITY_DN1157_c0_g1	682	703	694	-28.20	-18.80	0.666666666666667	6	2-9,702-695;11-17,693-687;18-21,685-682	1-1,703-703[UP5];10-10,694-694[SIL];x-x,686-686[BULt]	((((.(((((((.((((((((.&.)))))))).)))))))-))))	GAAGAAAGAAAGCGAAGAGAAU&UUUUUCUUUCCUUUCUU-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1157_c0_g1_694_TPlot.pdf
TRINITY_DN1157_c0_g1:901	si_a784	TRINITY_DN1157_c0_g1	890	912	901	-24.70	-16.48	0.667206477732794	13.5	2-8,911-905;11-19,900-892	1-1,912-912[UP5];9-10,904-901[AILt];20-21,891-890[UP3]	..(((((((((....(((((((.&.)))))))--..)))))))))..	ACGAUAGAAGAUUUGAGGAGAGA&ACUCUUCU--AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1157_c0_g1_901_TPlot.pdf
TRINITY_DN1157_c0_g1:902	si_a783	TRINITY_DN1157_c0_g1	891	913	902	-24.70	-16.48	0.667206477732794	14	3-9,911-905;12-20,900-892	1-2,913-912[UP5];10-11,904-901[AILt];21-21,891-891[UP3]	.(((((((((....(((((((..&..)))))))--..))))))))).	CGAUAGAAGAUUUGAGGAGAGAC&AACUCUUCU--AUUUUUCUAUUU	2	0.999999999947624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1157_c0_g1_902_TPlot.pdf
TRINITY_DN1157_c0_g1:903	si_s84	TRINITY_DN1157_c0_g1	891	912	903	-32.30	-21.88	0.677399380804954	9	1-9,912-904;13-18,900-895;19-21,893-891	10-12,903-901[SIL];x-x,894-894[BULt]	(((.((((((...(((((((((&)))))))))...))))))-)))	CGAUAGAAGAUUUGAGGAGAGA&UCUUUCCUUUCUUCUUCU-UCG	2	0.999999999873262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1157_c0_g1_903_TPlot.pdf
TRINITY_DN1157_c0_g1:908	si_s79	TRINITY_DN1157_c0_g1	894	917	908	-26.20	-18.60	0.709923664122137	8.5	1-4,917-914;6-14,912-904;15-20,900-895	5-5,913-913[SIL];x-x,903-901[BULt];21-21,894-894[UP3]	.((((((...(((((((((.((((&)))).)))))))))---)))))).	UAGAAGAUUUGAGGAGAGACGAAA&UUUUUUCUUUCCUU---UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1157_c0_g1_908_TPlot.pdf
TRINITY_DN1157_c0_g1:909	si_s78	TRINITY_DN1157_c0_g1	895	918	909	-26.20	-19.00	0.725190839694656	8	1-5,918-914;7-15,912-904;16-21,900-895	6-6,913-913[SIL];x-x,903-901[BULt]	((((((...(((((((((.(((((&))))).)))))))))---))))))	AGAAGAUUUGAGGAGAGACGAAAG&UUUUUUUCUUUCCUU---UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1157_c0_g1_909_TPlot.pdf
TRINITY_DN1157_c0_g1:910	si_s77	TRINITY_DN1157_c0_g1	896	920	910	-25.50	-18.60	0.729411764705882	9.5	1-7,920-914;8-16,912-904;17-21,900-896	x-x,913-913[BULt];x-x,903-901[BULt]	(((((...(((((((((.(((((((&)))))))-)))))))))---)))))	GAAGAUUUGAGGAGAGACGAAAGGA&UUUUUUU-UCUUUCCUU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1157_c0_g1_910_TPlot.pdf
TRINITY_DN1157_c0_g1:911	si_s76	TRINITY_DN1157_c0_g1	897	921	911	-23.60	-15.40	0.652542372881356	10.5	2-8,920-914;9-17,912-904;18-21,900-897	1-1,921-921[UP5];x-x,913-913[BULt];x-x,903-901[BULt]	((((...(((((((((.(((((((.&.)))))))-)))))))))---))))	AAGAUUUGAGGAGAGACGAAAGGAA&AUUUUUUU-UCUUUCCUU---UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1157_c0_g1_911_TPlot.pdf
TRINITY_DN11582_c0_g1:1130	si_a641	TRINITY_DN11582_c0_g1	1119	1139	1130	-23.60	-17.10	0.724576271186441	8	2-17,1138-1123	1-1,1139-1139[UP5];18-21,1122-1119[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAAGGUGUUGCUCAAAAGAAG&AUUUUUUUGAGUAAUAUAUCG	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN11582_c0_g1_1130_TPlot.pdf
TRINITY_DN11582_c0_g1:120	si_a762	TRINITY_DN11582_c0_g1	109	129	120	-29.70	-20.30	0.683501683501683	12	1-8,129-122;11-17,119-113	9-10,121-120[SIL];18-21,112-109[UP3]	....(((((((..((((((((&))))))))..)))))))....	CAGCCGGUCGAUCGCCCGAAG&CUUUGGGUUUUUGAUUGAUUC	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN11582_c0_g1_120_TPlot.pdf
TRINITY_DN11582_c0_g1:121	si_a761	TRINITY_DN11582_c0_g1	110	130	121	-30.10	-23.60	0.784053156146179	10.5	1-9,130-122;12-18,119-113	10-11,121-120[SIL];19-21,112-110[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	AGCCGGUCGAUCGCCCGAAGG&CCUUUGGGUUUUUGAUUGAUU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN11582_c0_g1_121_TPlot.pdf
TRINITY_DN11582_c0_g1:565	si_s599	TRINITY_DN11582_c0_g1	554	581	565	-27.80	-19.10	0.68705035971223	18.5	3-8,579-574;9-20,566-555	1-2,581-580[UP5];x-x,573-567[BULt];21-21,554-554[UP3]	.((((((((((((.......((((((..&..))))))-------)))))))))))).	CAAAGAGAUUCGCCGCUUGAUUGGAUCU&AAAUCCAA-------GCGAAUCUUUUUU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN11582_c0_g1_565_TPlot.pdf
TRINITY_DN11582_c0_g1:768	si_s100	TRINITY_DN11582_c0_g1	751	777	768	-33.70	-23.00	0.682492581602374	15.5	1-10,777-768;11-12,766-765;13-18,759-754	x-x,767-767[BULt];x-x,764-760[BULt];19-21,753-751[UP3]	...((((((.....((.((((((((((&))))))))))-))-----))))))...	CGCUUCCGACGAUUUCUCGAAGCGAAG&CUUCGCUUCG-GA-----UUGGAAAAU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN11582_c0_g1_768_TPlot.pdf
TRINITY_DN11582_c0_g1:769	si_s99	TRINITY_DN11582_c0_g1	752	778	769	-34.60	-23.20	0.670520231213873	10	1-11,778-768;12-13,766-765;14-19,759-754	x-x,767-767[BULt];x-x,764-760[BULt];20-21,753-752[UP3]	..((((((.....((.(((((((((((&)))))))))))-))-----))))))..	GCUUCCGACGAUUUCUCGAAGCGAAGG&UCUUCGCUUCG-GA-----UUGGAAAA	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN11582_c0_g1_769_TPlot.pdf
TRINITY_DN11584_c1_g1:778	si_s82	TRINITY_DN11584_c1_g1	767	787	778	-28.90	-19.30	0.667820069204152	8.5	2-11,786-777;14-19,774-769	1-1,787-787[UP5];12-13,776-775[SIL];20-21,768-767[UP3]	..((((((..((((((((((.&.))))))))))..))))))..	CCGAGGAAACGAGGAAGGAAC&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11584_c1_g1_778_TPlot.pdf
TRINITY_DN11586_c0_g1:5567	si_a497	TRINITY_DN11586_c0_g1	5555	5576	5567	-32.00	-21.70	0.678125	12	3-5,5574-5572;7-10,5570-5567;11-20,5565-5556	1-2,5576-5575[UP5];6-6,5571-5571[SIL];x-x,5566-5566[BULt];21-21,5555-5555[UP3]	.((((((((((.((((.(((..&..))).))))-)))))))))).	CGGGAAGGCGGCAAGGGGACGG&AUGUCGUUUU-UCGUCUUCCUU	4	0.999999999999142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN11586_c0_g1_5567_TPlot.pdf
TRINITY_DN11586_c0_g1:7632	si_a498	TRINITY_DN11586_c0_g1	7621	7640	7632	-33.50	-23.10	0.68955223880597	7.5	1-1,7640-7640;3-6,7638-7635;9-20,7633-7622	2-2,7639-7639[SIL];7-8,7634-7634[AILq];21-21,7621-7621[UP3]	.((((((((((((.-((((.(&).))))..)))))))))))).	AGAGGAAGACGAAU-ACGAGA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN11586_c0_g1_7632_TPlot.pdf
TRINITY_DN11587_c0_g1:952	si_a329	TRINITY_DN11587_c0_g1	941	961	952	-29.60	-19.30	0.652027027027027	6	1-9,961-953;11-17,951-945;19-21,943-941	10-10,952-952[SIL];18-18,944-944[SIL]	(((.(((((((.(((((((((&))))))))).))))))).)))	UGGAACAGGGAUUAGAAAAGU&AUUUUUUUAUUCCUUGUCCCG	4	0.99999999986239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN11587_c0_g1_952_TPlot.pdf
TRINITY_DN11587_c1_g2:22	si_a229	TRINITY_DN11587_c1_g2	11	30	22	-27.60	-18.20	0.659420289855072	6.5	3-8,28-23;10-20,22-12	1-2,30-29[UP5];9-9,x-x[BULq];21-21,11-11[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	GGAAUUGGUUAU-GAAACAGC&CAUGUUUCUAUAAUCAAUUCG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN11587_c1_g2_22_TPlot.pdf
TRINITY_DN1158_c0_g1:3629	si_a662	TRINITY_DN1158_c0_g1	3618	3637	3629	-33.40	-21.80	0.652694610778443	10.5	1-3,3637-3635;6-9,3632-3629;13-21,3626-3618	4-5,3634-3633[SIL];10-12,3628-3627[AILq]	(((((((((..-((((..(((&)))..))))...)))))))))	AAGGAAUCGCC-GGCAGGUCC&GGAAAUGCCUAUUGAUUCCUU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a662_TRINITY_DN1158_c0_g1_3629_TPlot.pdf
TRINITY_DN11593_c0_g1:1279	si_s16	TRINITY_DN11593_c0_g1	1268	1292	1279	-25.60	-17.00	0.6640625	16.5	4-8,1289-1285;9-20,1280-1269	1-3,1292-1290[UP5];x-x,1284-1281[BULt];21-21,1268-1268[UP3]	.((((((((((((....(((((...&...)))))----)))))))))))).	AUGCAGUCAAUGUUACUAGUGAAUG&UUAUUACU----AUAUUGAUUGCAA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN11593_c0_g1_1279_TPlot.pdf
TRINITY_DN11598_c0_g1:2101	si_a755	TRINITY_DN11598_c0_g1	2089	2110	2101	-34.90	-23.10	0.66189111747851	9	3-12,2108-2099;13-14,2097-2096;16-21,2094-2089	1-2,2110-2109[UP5];x-x,2098-2098[BULt];15-15,2095-2095[SIL]	((((((.((.((((((((((..&..))))))))))-)).))))))	UCGAAGUCCGCGGAGGAGGUAU&GAACCUCCUUUG-GGUUUUUGA	4	0.999956038068356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN11598_c0_g1_2101_TPlot.pdf
TRINITY_DN1159_c0_g1:3235	si_s321	TRINITY_DN1159_c0_g1	3223	3244	3235	-31.00	-20.40	0.658064516129032	9	1-14,3244-3231;15-17,3229-3227	x-x,3230-3230[BULt];18-21,3226-3223[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	CUUAGUUAUGUGAUAGGAGGGA&UCCUUCUUGUUACA-AACAUAC	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN1159_c0_g1_3235_TPlot.pdf
TRINITY_DN1159_c0_g1:653	si_s292	TRINITY_DN1159_c0_g1	642	663	653	-36.60	-24.10	0.658469945355191	7.5	1-4,663-660;6-21,657-642	5-5,659-658[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	UCGUAAUUCUAAUUGGUAUAGG&CCUA-GUCGAUUGGAAUUGCGA	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN1159_c0_g1_653_TPlot.pdf
TRINITY_DN1159_c0_g1:955	si_a471	TRINITY_DN1159_c0_g1	944	964	955	-21.10	-14.60	0.691943127962085	11	5-10,960-955;12-21,953-944	1-4,964-961[UP5];11-11,954-954[SIL]	((((((((((.((((((....&....)))))).))))))))))	GUAUGACAAUUGUUACAAAAA&AAUAUGUAAUUAUUGUUAUAU	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN1159_c0_g1_955_TPlot.pdf
TRINITY_DN1159_c0_g2:434	si_s585	TRINITY_DN1159_c0_g2	423	443	434	-27.00	-17.70	0.655555555555556	9	4-10,440-434;12-15,432-429;17-21,427-423	1-3,443-441[UP5];11-11,433-433[SIL];16-16,428-428[SIL]	(((((.((((.(((((((...&...))))))).)))).)))))	UGGGUGUGUCGAUGAUUUACA&AAAAAAUCAUGGAUAAAUCCA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN1159_c0_g2_434_TPlot.pdf
TRINITY_DN115_c0_g1:1604	si_s12	TRINITY_DN115_c0_g1	1592	1614	1604	-22.80	-15.20	0.666666666666667	6	1-9,1614-1606;10-11,1604-1603;12-21,1601-1592	x-x,1605-1605[BULt];x-x,1602-1602[BULt]	((((((((((.((.(((((((((&)))))))))-))-))))))))))	AAUUAAUGUAUGUAGAUAAUAAG&CUUAUUAUU-AC-UAUAUUGAUU	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN115_c0_g1_1604_TPlot.pdf
TRINITY_DN115_c0_g1:670	si_s75	TRINITY_DN115_c0_g1	658	679	670	-24.00	-17.50	0.729166666666667	7.5	3-15,677-665;16-20,663-659	1-2,679-678[UP5];x-x,664-664[BULt];21-21,658-658[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UGGAAGAGAAGGAAAAAGAAAG&UAUUUUUUUUCUUUC-CUUUCU	2	0.999999999735869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN115_c0_g1_670_TPlot.pdf
TRINITY_DN115_c0_g1:671	si_s74	TRINITY_DN115_c0_g1	659	680	671	-25.00	-18.10	0.724	6	1-2,680-679;4-16,677-665;17-21,663-659	3-3,678-678[SIL];x-x,664-664[BULt]	(((((.(((((((((((((.((&)).)))))))))))))-)))))	GGAAGAGAAGGAAAAAGAAAGG&CUAUUUUUUUUCUUUC-CUUUC	3	0.999999999530211	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN115_c0_g1_671_TPlot.pdf
TRINITY_DN115_c0_g1:672	si_s73	TRINITY_DN115_c0_g1	660	681	672	-24.00	-17.60	0.733333333333333	6	1-3,681-679;5-17,677-665;18-21,663-660	4-4,678-678[SIL];x-x,664-664[BULt]	((((.(((((((((((((.(((&))).)))))))))))))-))))	GAAGAGAAGGAAAAAGAAAGGA&UCUAUUUUUUUUCUUUC-CUUU	3	0.999999999989966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN115_c0_g1_672_TPlot.pdf
TRINITY_DN115_c0_g1:673	si_s72	TRINITY_DN115_c0_g1	661	682	673	-24.10	-17.20	0.713692946058091	5.5	1-4,682-679;6-18,677-665;19-21,663-661	5-5,678-678[SIL];x-x,664-664[BULt]	(((.(((((((((((((.((((&)))).)))))))))))))-)))	AAGAGAAGGAAAAAGAAAGGAA&UUCUAUUUUUUUUCUUUC-CUU	2	0.999999999463066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN115_c0_g1_673_TPlot.pdf
TRINITY_DN115_c0_g1:674	si_s77	TRINITY_DN115_c0_g1	660	683	674	-25.50	-18.50	0.725490196078431	7.5	1-11,683-673;12-15,670-667;16-21,665-660	x-x,672-671[BULt];x-x,666-666[BULt]	((((((.((((..(((((((((((&)))))))))))--))))-))))))	GAAGAGAAGGAAAAAGAAAGGAAA&UUUUUUUUCUU--UCCU-UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN115_c0_g1_674_TPlot.pdf
TRINITY_DN115_c0_g1:677	si_s83	TRINITY_DN115_c0_g1	665	686	677	-30.90	-23.00	0.744336569579288	3.5	2-14,685-673;16-21,670-665	1-1,686-686[UP5];15-15,672-671[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	GAAGGAAAAAGAAAGGAAAGAU&UUCUUUCCUUUCUU-CUUCUUC	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN115_c0_g1_677_TPlot.pdf
TRINITY_DN11602_c0_g1:1017	si_a628	TRINITY_DN11602_c0_g1	1006	1025	1017	-27.10	-19.10	0.70479704797048	8	1-4,1025-1022;6-17,1021-1010	5-5,x-x[BULq];18-21,1009-1006[UP3]	....((((((((((((-((((&)))).))))))))))))....	ACACAAAUCGGCAUAG-ACGC&GCGUAUUAUGUCGAUUUUUUU	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN11602_c0_g1_1017_TPlot.pdf
TRINITY_DN11602_c0_g1:1022	si_a623	TRINITY_DN11602_c0_g1	1011	1030	1022	-33.10	-21.80	0.658610271903323	10.5	5-9,1026-1022;11-21,1021-1011	1-4,1030-1027[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	AAUCGGCAUAG-ACGCCCCUA&ACUAGGCGUAUUAUGUCGAUU	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN11602_c0_g1_1022_TPlot.pdf
TRINITY_DN11602_c0_g1:1569	si_a65	TRINITY_DN11602_c0_g1	1558	1579	1569	-27.70	-19.70	0.711191335740072	10	1-9,1579-1571;11-19,1568-1560	10-10,1570-1569[AILt];20-21,1559-1558[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	GCGGCGAUUUGUCAGGAGGCGG&UCGCUUCUU-UCAAAUUGUUUU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN11602_c0_g1_1569_TPlot.pdf
TRINITY_DN11602_c0_g1:537	si_s309	TRINITY_DN11602_c0_g1	524	545	537	-33.80	-22.60	0.668639053254438	8.5	1-4,545-542;7-16,540-531;18-21,527-524	5-6,541-541[AILq];17-17,530-528[AILt]	((((...((((((((((.-((((&))))..))))))))))--.))))	CGAGCAUAGGACAGGAUG-UCGC&GCGAAAAUUCUGUCCU--UCUUG	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN11602_c0_g1_537_TPlot.pdf
TRINITY_DN11602_c0_g1:974	si_a54	TRINITY_DN11602_c0_g1	964	984	974	-37.30	-24.60	0.659517426273459	9.5	3-6,982-979;7-11,977-973;13-20,972-965	1-2,984-983[UP5];x-x,978-978[BULt];12-12,x-x[BULq];21-21,964-964[UP3]	.((((((((-(((((.((((..&..))))-))))).)))))))).	CGAGAAGCG-GUUGAGCUCCCA&UAGGAG-UCGACUCGCUUCUUU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN11602_c0_g1_974_TPlot.pdf
TRINITY_DN11603_c0_g1:990	si_s82	TRINITY_DN11603_c0_g1	979	1001	990	-28.90	-19.28	0.667128027681661	12.5	1-9,1001-993;12-19,988-981	10-11,992-989[AILt];20-21,980-979[UP3]	..((((((((....(((((((((&)))))))))--..))))))))..	AUGGAGGGGAUAACGGAAAGAGA&UUUCUUUCC--UUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11603_c0_g1_990_TPlot.pdf
TRINITY_DN11603_c0_g1:996	si_s78	TRINITY_DN11603_c0_g1	981	1005	996	-26.20	-18.80	0.717557251908397	10	2-13,1004-993;14-21,988-981	1-1,1005-1005[UP5];x-x,992-989[BULt]	((((((((....((((((((((((.&.))))))))))))----))))))))	GGAGGGGAUAACGGAAAGAGAGGAC&UUUUUUUCUUUCC----UUUCUUCU	2	0.999999999997991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN11603_c0_g1_996_TPlot.pdf
TRINITY_DN11605_c0_g1:798	si_a816	TRINITY_DN11605_c0_g1	788	807	798	-32.30	-21.50	0.665634674922601	4.5	1-13,807-795;15-18,794-791	14-14,x-x[BULq];19-21,790-788[UP3]	...((((-(((((((((((((&))))))))))))).))))...	AAAUUUC-UUCUUCUUCUUCG&CGAAGAAGAAGAAAGGAAAGA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN11605_c0_g1_798_TPlot.pdf
TRINITY_DN11605_c0_g1:800	si_a814	TRINITY_DN11605_c0_g1	790	809	800	-32.90	-21.50	0.653495440729483	5.5	3-15,807-795;17-20,794-791	1-2,809-808[UP5];16-16,x-x[BULq];21-21,790-790[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	AUUUC-UUCUUCUUCUUCGGA&AGCGAAGAAGAAGAAAGGAAA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN11605_c0_g1_800_TPlot.pdf
TRINITY_DN1160_c0_g1:2435	si_s305	TRINITY_DN1160_c0_g1	2424	2444	2435	-30.30	-20.10	0.663366336633663	6	2-11,2443-2434;12-15,2432-2429;17-21,2428-2424	1-1,2444-2444[UP5];x-x,2433-2433[BULt];16-16,x-x[BULq]	(((((-((((.((((((((((.&.))))))))))-)))).)))))	AAGGA-AGAGUUUUUCGCAGUA&AAUUGCGAAAA-UUCUGUCCUU	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN1160_c0_g1_2435_TPlot.pdf
TRINITY_DN1160_c1_g1:978	si_s10	TRINITY_DN1160_c1_g1	967	987	978	-23.80	-15.80	0.663865546218487	9	3-16,985-972	1-2,987-986[UP5];17-21,971-967[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAGAGAUAGUAAUAAUGAGGU&UACUUAUUAUUACUAUAUUGA	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN1160_c1_g1_978_TPlot.pdf
TRINITY_DN1160_c1_g1:982	si_s6	TRINITY_DN1160_c1_g1	971	992	982	-21.70	-16.70	0.769585253456221	7	2-7,991-986;8-20,984-972	1-1,992-992[UP5];x-x,985-985[BULt];21-21,971-971[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	GAUAGUAAUAAUGAGGUAGUGA&AUAUUAC-UUAUUAUUACUAUA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN1160_c1_g1_982_TPlot.pdf
TRINITY_DN1160_c6_g1:1399	si_s38	TRINITY_DN1160_c6_g1	1388	1408	1399	-22.70	-18.10	0.797356828193833	10	5-19,1404-1390	1-4,1408-1405[UP5];20-21,1389-1388[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUUCCAAUUGUUAAAGAGAAG&UAAAUCUUUAAUAAUUGGAUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN1160_c6_g1_1399_TPlot.pdf
TRINITY_DN11610_c0_g1:1701	si_a71	TRINITY_DN11610_c0_g1	1690	1710	1701	-23.30	-15.30	0.656652360515022	9	1-10,1710-1701;13-17,1698-1694	11-12,1700-1699[SIL];18-21,1693-1690[UP3]	....(((((..((((((((((&))))))))))..)))))....	AAUAGAAAAUAAAUUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN11610_c0_g1_1701_TPlot.pdf
TRINITY_DN11610_c0_g2:996	si_a72	TRINITY_DN11610_c0_g2	985	1005	996	-21.90	-15.16	0.692237442922374	10	1-5,1005-1001;10-21,996-985	6-9,1000-997[SIL]	((((((((((((....(((((&)))))....))))))))))))	AUGAUGAGGAACUUAGUGAAG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999959821998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN11610_c0_g2_996_TPlot.pdf
TRINITY_DN1161_c0_g1:1435	si_a409	TRINITY_DN1161_c0_g1	1424	1444	1435	-19.50	-12.70	0.651282051282051	8.5	2-7,1443-1438;9-20,1436-1425	1-1,1444-1444[UP5];8-8,1437-1437[SIL];21-21,1424-1424[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AUGUUUGGAUAUGUACGGAAA&GUUUUGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1161_c0_g1_1435_TPlot.pdf
TRINITY_DN1161_c0_g1:1436	si_a408	TRINITY_DN1161_c0_g1	1425	1446	1436	-20.10	-13.40	0.666666666666667	7.5	1-6,1446-1441;7-8,1439-1438;10-21,1436-1425	x-x,1440-1440[BULt];9-9,1437-1437[SIL]	((((((((((((.((.((((((&))))))-)).))))))))))))	UGUUUGGAUAUGUACGGAAACA&UGUUUU-GUUUAUAUUUAAAUA	4	0.999999999998305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN1161_c0_g1_1436_TPlot.pdf
TRINITY_DN1161_c0_g1:1595	si_a885	TRINITY_DN1161_c0_g1	1584	1604	1595	-25.60	-17.50	0.68359375	7	2-13,1603-1592;15-15,1590-1590;18-21,1587-1584	1-1,1604-1604[UP5];14-14,1591-1591[SIL];16-17,1589-1588[SIL]	((((..(.((((((((((((.&.)))))))))))).)..))))	GUUAGAGGUGUGUUGAUUGCC&UGCAAUCAAUAUAGUAAUAAU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN1161_c0_g1_1595_TPlot.pdf
TRINITY_DN11620_c0_g1:1688	si_s236	TRINITY_DN11620_c0_g1	1676	1696	1688	-29.60	-19.30	0.652027027027027	9	4-8,1693-1689;10-14,1688-1684;15-21,1682-1676	1-3,1696-1694[UP5];9-9,x-x[BULq];x-x,1683-1683[BULt]	(((((((.(((((-(((((...&...))))).)))))-)))))))	GAGUGCCUUAUUG-UUCCUAAA&AUAAGGAAUCAAUA-GGCAUUU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN11620_c0_g1_1688_TPlot.pdf
TRINITY_DN11620_c0_g1:2638	si_s42	TRINITY_DN11620_c0_g1	2627	2646	2638	-24.90	-16.20	0.650602409638554	7.5	2-5,2645-2642;8-20,2640-2628	1-1,2646-2646[UP5];6-7,2641-2641[AILq];21-21,2627-2627[UP3]	.(((((((((((((.-((((.&.))))..))))))))))))).	CUGAAGUCCGAUUAC-AAAGC&UCUUUAAUAAUUGGAUUUCAA	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN11620_c0_g1_2638_TPlot.pdf
TRINITY_DN11620_c0_g1:4274	si_s13	TRINITY_DN11620_c0_g1	4260	4283	4274	-22.90	-17.50	0.764192139737991	10.5	2-11,4282-4273;12-21,4269-4260	1-1,4283-4283[UP5];x-x,4272-4270[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	CAAUCGGUGUAAUGGUAAUGAUAC&UUAUUAUUACU---AUAUUGAUUG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN11620_c0_g1_4274_TPlot.pdf
TRINITY_DN11623_c0_g1:939	si_s574	TRINITY_DN11623_c0_g1	928	948	939	-26.20	-18.60	0.709923664122137	3.5	2-13,947-936;15-21,934-928	1-1,948-948[UP5];14-14,935-935[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GUGAUUUGUUUAUUUCUUGUA&GACAAGGAAUAAAAAAAUCAU	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN11623_c0_g1_939_TPlot.pdf
TRINITY_DN1162_c0_g1:1070	si_s76	TRINITY_DN1162_c0_g1	1058	1079	1070	-23.60	-15.40	0.652542372881356	4	2-14,1078-1066;15-17,1064-1062;19-21,1060-1058	1-1,1079-1079[UP5];x-x,1065-1065[BULt];18-18,1061-1061[SIL]	(((.(((.(((((((((((((.&.)))))))))))))-))).)))	AAGCAAGCGAAAGAAAAAGAAC&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1162_c0_g1_1070_TPlot.pdf
TRINITY_DN1162_c0_g1:1074	si_s72	TRINITY_DN1162_c0_g1	1062	1087	1074	-24.10	-16.20	0.672199170124481	12	1-6,1087-1082;7-18,1077-1066;19-21,1064-1062	x-x,1081-1078[BULt];x-x,1065-1065[BULt]	(((.((((((((((((....((((((&))))))----))))))))))))-)))	AAGCGAAAGAAAAAGAACUAGUGGAA&UUCUAU----UUUUUUUCUUUC-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1162_c0_g1_1074_TPlot.pdf
TRINITY_DN1162_c0_g1:1075	si_s71	TRINITY_DN1162_c0_g1	1063	1088	1075	-25.70	-18.30	0.712062256809339	12	1-7,1088-1082;8-19,1077-1066;20-21,1064-1063	x-x,1081-1078[BULt];x-x,1065-1065[BULt]	((.((((((((((((....(((((((&)))))))----))))))))))))-))	AGCGAAAGAAAAAGAACUAGUGGAAG&CUUCUAU----UUUUUUUCUUUC-CU	3	0.999999999999895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1162_c0_g1_1075_TPlot.pdf
TRINITY_DN1162_c0_g1:1076	si_s70	TRINITY_DN1162_c0_g1	1065	1089	1076	-25.80	-17.60	0.682170542635659	13	2-8,1088-1082;9-20,1077-1066	1-1,1089-1089[UP5];x-x,1081-1078[BULt];21-21,1065-1065[UP3]	.((((((((((((....(((((((.&.)))))))----)))))))))))).	CGAAAGAAAAAGAACUAGUGGAAGA&ACUUCUAU----UUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1162_c0_g1_1076_TPlot.pdf
TRINITY_DN1162_c0_g1:1077	si_s69	TRINITY_DN1162_c0_g1	1066	1090	1077	-23.40	-17.60	0.752136752136752	14	3-9,1088-1082;10-21,1077-1066	1-2,1090-1089[UP5];x-x,1081-1078[BULt]	((((((((((((....(((((((..&..)))))))----))))))))))))	GAAAGAAAAAGAACUAGUGGAAGAG&AACUUCUAU----UUUUUUUCUUUC	4	0.999999969905976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1162_c0_g1_1077_TPlot.pdf
TRINITY_DN1162_c0_g1:1082	si_a784	TRINITY_DN1162_c0_g1	1070	1091	1082	-24.70	-16.10	0.651821862348178	8.5	2-11,1090-1081;13-16,1078-1075;18-21,1073-1070	1-1,1091-1091[UP5];12-12,1080-1079[AILt];17-17,1074-1074[SIL]	((((.((((..((((((((((.&.))))))))))-.)))).))))	GAAAAAGAACUAGUGGAAGAGG&ACUCUUCUAUU-UUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1162_c0_g1_1082_TPlot.pdf
TRINITY_DN1162_c0_g1:1095	si_s84	TRINITY_DN1162_c0_g1	1084	1104	1095	-32.30	-21.70	0.671826625386997	7.5	1-5,1104-1100;7-8,1098-1097;10-20,1095-1085	6-6,1099-1099[SIL];9-9,1096-1096[SIL];21-21,1084-1084[UP3]	.(((((((((((.((.(((((&))))).)).))))))))))).	GGAAGAGGAAGAUAGUGAGGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1162_c0_g1_1095_TPlot.pdf
TRINITY_DN1162_c0_g1:1096	si_s83	TRINITY_DN1162_c0_g1	1085	1105	1096	-30.90	-21.30	0.689320388349515	7.5	2-6,1104-1100;8-9,1098-1097;11-21,1095-1085	1-1,1105-1105[UP5];7-7,1099-1099[SIL];10-10,1096-1096[SIL]	(((((((((((.((.(((((.&.))))).)).)))))))))))	GAAGAGGAAGAUAGUGAGGAU&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1162_c0_g1_1096_TPlot.pdf
TRINITY_DN1162_c0_g1:1103	si_a785	TRINITY_DN1162_c0_g1	1091	1114	1103	-25.90	-18.10	0.698841698841699	9	1-6,1114-1109;7-13,1106-1100;14-21,1098-1091	x-x,1108-1107[BULt];x-x,1099-1099[BULt]	((((((((.(((((((..((((((&))))))--)))))))-))))))))	GAAGAUAGUGAGGAUGAUGAAGAG&CUCUUC--UAUUUUU-CUAUUUUC	3	0.999999999490587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1162_c0_g1_1103_TPlot.pdf
TRINITY_DN1162_c0_g1:1675	si_s76	TRINITY_DN1162_c0_g1	1664	1684	1675	-23.60	-16.70	0.707627118644068	4.5	2-13,1683-1672;15-21,1670-1664	1-1,1684-1684[UP5];14-14,1671-1671[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GAGAAAGAAAAGGAAAAAGAG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1162_c0_g1_1675_TPlot.pdf
TRINITY_DN1162_c0_g1:1676	si_s75	TRINITY_DN1162_c0_g1	1665	1685	1676	-24.00	-15.80	0.658333333333333	6	3-14,1683-1672;16-21,1670-1665	1-2,1685-1684[UP5];15-15,1671-1671[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAAGAAAAGGAAAAAGAGA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1162_c0_g1_1676_TPlot.pdf
TRINITY_DN1162_c0_g1:1677	si_s69	TRINITY_DN1162_c0_g1	1666	1689	1677	-23.40	-15.54	0.664102564102564	13	3-7,1687-1683;9-21,1678-1666	1-2,1689-1688[UP5];8-8,1682-1679[AILt]	(((((((((((((....(((((..&..)))))---.)))))))))))))	GAAAGAAAAGGAAAAAGAGAAGGA&AACUUCU---AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1162_c0_g1_1677_TPlot.pdf
TRINITY_DN1162_c0_g1:1692	si_s76	TRINITY_DN1162_c0_g1	1680	1701	1692	-23.60	-19.40	0.822033898305085	6.5	3-16,1699-1686;17-21,1684-1680	1-2,1701-1700[UP5];x-x,1685-1685[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AAGAGAAGGAAGGAGAAAAAGA&AUUUUUUUUCUUUCCU-UUCUU	3	0.999971513383237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1162_c0_g1_1692_TPlot.pdf
TRINITY_DN1162_c0_g1:1693	si_s79	TRINITY_DN1162_c0_g1	1682	1702	1693	-26.20	-21.10	0.805343511450382	5	1-6,1702-1697;8-21,1695-1682	7-7,1696-1696[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	GAGAAGGAAGGAGAAAAAGAA&UUUUUUCUUUCCUUUCUUCUU	2	0.998668369541685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1162_c0_g1_1693_TPlot.pdf
TRINITY_DN1162_c0_g1:1694	si_s74	TRINITY_DN1162_c0_g1	1683	1703	1694	-25.00	-18.10	0.724	10	5-20,1699-1684	1-4,1703-1700[UP5];21-21,1683-1683[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAGGAAGGAGAAAAAGAAA&CUAUUUUUUUUCUUUCCUUUC	2	0.999998779300891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1162_c0_g1_1694_TPlot.pdf
TRINITY_DN1162_c0_g1:1695	si_s73	TRINITY_DN1162_c0_g1	1684	1705	1695	-24.00	-18.00	0.75	7.5	1-3,1705-1703;5-21,1700-1684	4-4,1702-1701[AILt]	(((((((((((((((((..(((&)))-.)))))))))))))))))	GAAGGAAGGAGAAAAAGAAAGG&UCU-AUUUUUUUUCUUUCCUUU	2	0.999991905066619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1162_c0_g1_1695_TPlot.pdf
TRINITY_DN1162_c0_g1:1696	si_s72	TRINITY_DN1162_c0_g1	1685	1708	1696	-24.10	-17.72	0.735269709543568	12.5	1-4,1708-1705;7-21,1699-1685	5-6,1704-1700[AILt]	(((((((((((((((.....((((&))))---..)))))))))))))))	AAGGAAGGAGAAAAAGAAAGGGAA&UUCU---AUUUUUUUUCUUUCCUU	3	0.999999999897076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1162_c0_g1_1696_TPlot.pdf
TRINITY_DN1162_c0_g1:1697	si_s71	TRINITY_DN1162_c0_g1	1686	1709	1697	-25.70	-17.02	0.662256809338521	13	2-5,1708-1705;8-21,1699-1686	1-1,1709-1709[UP5];6-7,1704-1700[AILt]	((((((((((((((.....((((.&.))))---..))))))))))))))	AGGAAGGAGAAAAAGAAAGGGAAA&CUUCU---AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1162_c0_g1_1697_TPlot.pdf
TRINITY_DN1162_c0_g1:1699	si_s77	TRINITY_DN1162_c0_g1	1684	1708	1699	-25.50	-20.50	0.803921568627451	11.5	1-11,1708-1698;12-21,1693-1684	x-x,1697-1694[BULt]	((((((((((....(((((((((((&)))))))))))----))))))))))	GAAGGAAGGAGAAAAAGAAAGGGAA&UUUUUUUUCUU----UCCUUUCUUC	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1162_c0_g1_1699_TPlot.pdf
TRINITY_DN1162_c0_g1:1701	si_s84	TRINITY_DN1162_c0_g1	1687	1710	1701	-32.30	-21.90	0.678018575851393	11.5	3-12,1708-1699;13-20,1695-1688	1-2,1710-1709[UP5];x-x,1698-1696[BULt];21-21,1687-1687[UP3]	.((((((((...((((((((((..&..))))))))))---)))))))).	GGAAGGAGAAAAAGAAAGGGAAAA&UCUUUCCUUUCU---UCUUCUUCG	2	0.99999999985824	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1162_c0_g1_1701_TPlot.pdf
TRINITY_DN1162_c0_g1:1702	si_s83	TRINITY_DN1162_c0_g1	1688	1711	1702	-30.90	-21.30	0.689320388349515	9.5	4-13,1708-1699;14-21,1695-1688	1-3,1711-1709[UP5];x-x,1698-1696[BULt]	((((((((...((((((((((...&...))))))))))---))))))))	GAAGGAGAAAAAGAAAGGGAAAAA&UUCUUUCCUUUCU---UCUUCUUC	2	0.999999999992003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1162_c0_g1_1702_TPlot.pdf
TRINITY_DN1162_c0_g1:2245	si_a777	TRINITY_DN1162_c0_g1	2234	2255	2245	-27.00	-22.40	0.82962962962963	5	1-5,2255-2251;6-19,2249-2236	x-x,2250-2250[BULt];20-21,2235-2234[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	CCAGAUGGAAGAGUUGUAAUCA&UGAUU-CAACUCUUCUAUUUUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN1162_c0_g1_2245_TPlot.pdf
TRINITY_DN1162_c0_g1:3633	si_a69	TRINITY_DN1162_c0_g1	3622	3642	3633	-24.00	-17.10	0.7125	5	1-5,3642-3638;7-12,3636-3631;14-21,3629-3622	6-6,3637-3637[SIL];13-13,3630-3630[SIL]	((((((((.((((((.(((((&))))).)))))).))))))))	AUGGAGAAGAAUUUGCGAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1162_c0_g1_3633_TPlot.pdf
TRINITY_DN1162_c0_g1:4126	si_s70	TRINITY_DN1162_c0_g1	4115	4135	4126	-25.80	-21.10	0.817829457364341	5	1-19,4135-4117	20-21,4116-4115[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UCGAAGGAAAGAGAUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1162_c0_g1_4126_TPlot.pdf
TRINITY_DN1162_c0_g1:4274	si_a229	TRINITY_DN1162_c0_g1	4263	4283	4274	-27.60	-19.70	0.713768115942029	9	1-15,4283-4269	16-21,4268-4263[UP3]	......(((((((((((((((&)))))))))))))))......	UAGAUAGAUUGUGGAAGCAUG&CAUGUUUCUAUAAUCAAUUCG	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN1162_c0_g1_4274_TPlot.pdf
TRINITY_DN1162_c0_g1:4278	si_a225	TRINITY_DN1162_c0_g1	4267	4287	4278	-27.50	-20.20	0.734545454545455	9	3-3,4285-4285;5-19,4283-4269	1-2,4287-4286[UP5];4-4,4284-4284[SIL];20-21,4268-4267[UP3]	..(((((((((((((((.(..&..).)))))))))))))))..	UAGAUUGUGGAAGCAUGUGCC&AACUCAUGUUUCUAUAAUCAA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN1162_c0_g1_4278_TPlot.pdf
TRINITY_DN1162_c0_g1:4280	si_a223	TRINITY_DN1162_c0_g1	4269	4289	4280	-27.10	-19.70	0.726937269372694	11	5-5,4285-4285;7-21,4283-4269	1-4,4289-4286[UP5];6-6,4284-4284[SIL]	(((((((((((((((.(....&....).)))))))))))))))	GAUUGUGGAAGCAUGUGCCCC&UAAACUCAUGUUUCUAUAAUC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN1162_c0_g1_4280_TPlot.pdf
TRINITY_DN1162_c0_g1:4324	si_s776	TRINITY_DN1162_c0_g1	4314	4333	4324	-25.10	-16.42	0.654183266932271	7	1-12,4333-4322;17-20,4318-4315	13-16,4321-4319[AILq];21-21,4314-4314[UP3]	.((((...-((((((((((((&))))))))))))....)))).	CUGUUGAA-AGCGAUAGUGAU&AUUACUAUUGCUAUAAAACAA	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN1162_c0_g1_4324_TPlot.pdf
TRINITY_DN1162_c0_g1:4325	si_s775	TRINITY_DN1162_c0_g1	4315	4334	4325	-25.00	-16.32	0.6528	7	2-13,4333-4322;18-21,4318-4315	1-1,4334-4334[UP5];14-17,4321-4319[AILq]	((((...-((((((((((((.&.))))))))))))....))))	UGUUGAA-AGCGAUAGUGAUC&AAUUACUAUUGCUAUAAAACA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN1162_c0_g1_4325_TPlot.pdf
TRINITY_DN1162_c0_g1:4391	si_s76	TRINITY_DN1162_c0_g1	4380	4400	4391	-23.60	-15.90	0.673728813559322	6.5	3-13,4398-4388;15-20,4386-4381	1-2,4400-4399[UP5];14-14,4387-4387[SIL];21-21,4380-4380[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	CAGAAAGUGAAGAAGAAAAGA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1162_c0_g1_4391_TPlot.pdf
TRINITY_DN1162_c0_g1:4392	si_s75	TRINITY_DN1162_c0_g1	4381	4401	4392	-24.00	-15.90	0.6625	7.5	4-14,4398-4388;16-21,4386-4381	1-3,4401-4399[UP5];15-15,4387-4387[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AGAAAGUGAAGAAGAAAAGAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1162_c0_g1_4392_TPlot.pdf
TRINITY_DN11630_c0_g1:30	si_s160	TRINITY_DN11630_c0_g1	19	40	30	-40.60	-27.50	0.677339901477833	11	2-7,39-34;8-8,32-32;10-19,30-21	1-1,40-40[UP5];x-x,33-33[BULt];9-9,31-31[SIL];20-21,20-19[UP3]	..((((((((((.(.((((((.&.))))))-).))))))))))..	GCUGCCUCUGGUGGCUGAGCCA&AGGUUCA-UGGCCAGGGGUAAA	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN11630_c0_g1_30_TPlot.pdf
TRINITY_DN1163_c0_g1:1708	si_a317	TRINITY_DN1163_c0_g1	1694	1717	1708	-24.30	-15.80	0.650205761316872	8	1-5,1717-1713;7-14,1711-1704;15-20,1700-1695	6-6,1712-1712[SIL];x-x,1703-1701[BULt];21-21,1694-1694[UP3]	.((((((...((((((((.(((((&))))).))))))))---)))))).	AGGAAAAUGCAUCAUGGACGAAUC&GAUUUAUCCAUGAU---UUUUUUA	3	0.999999999995798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1163_c0_g1_1708_TPlot.pdf
TRINITY_DN1163_c0_g1:1710	si_a315	TRINITY_DN1163_c0_g1	1699	1719	1710	-27.00	-18.80	0.696296296296296	9	2-7,1718-1713;9-16,1711-1704	1-1,1719-1719[UP5];8-8,1712-1712[SIL];17-21,1703-1699[UP3]	.....((((((((.((((((.&.)))))).)))))))).....	AAUGCAUCAUGGACGAAUCCU&UGGAUUUAUCCAUGAUUUUUU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN1163_c0_g1_1710_TPlot.pdf
TRINITY_DN11640_c0_g1:1138	si_s77	TRINITY_DN11640_c0_g1	1128	1147	1138	-25.50	-18.20	0.713725490196078	5	1-11,1147-1137;13-18,1136-1131;20-21,1129-1128	12-12,x-x[BULq];19-19,1130-1130[SIL]	((.((((((-(((((((((((&))))))))))).)))))).))	GAUGAGAGG-AAGAGAAAAAG&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11640_c0_g1_1138_TPlot.pdf
TRINITY_DN11640_c0_g1:1140	si_s75	TRINITY_DN11640_c0_g1	1130	1149	1140	-24.00	-18.30	0.7625	5.5	2-13,1148-1137;15-20,1136-1131	1-1,1149-1149[UP5];14-14,x-x[BULq];21-21,1130-1130[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	UGAGAGG-AAGAGAAAAAGUU&UAUUUUUUUUCUUUCCUUUCU	2	0.999989487053654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11640_c0_g1_1140_TPlot.pdf
TRINITY_DN11640_c0_g1:860	si_a870	TRINITY_DN11640_c0_g1	849	869	860	-24.80	-17.60	0.709677419354839	9.5	4-15,866-855;17-19,853-851	1-3,869-867[UP5];16-16,854-854[SIL];20-21,850-849[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	AGUGCUGCUAGAUCUUUAGAA&UAUUAAAGAUUUAGUUGCAAU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN11640_c0_g1_860_TPlot.pdf
TRINITY_DN11640_c0_g1:862	si_a868	TRINITY_DN11640_c0_g1	851	871	862	-24.80	-17.40	0.701612903225806	11	6-17,866-855;19-21,853-851	1-5,871-867[UP5];18-18,854-854[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	UGCUGCUAGAUCUUUAGAAAA&AUUAUUAAAGAUUUAGUUGCA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN11640_c0_g1_862_TPlot.pdf
TRINITY_DN11641_c0_g1:2753	si_s603	TRINITY_DN11641_c0_g1	2742	2762	2753	-27.20	-18.90	0.694852941176471	8.5	1-2,2762-2761;5-18,2758-2745	3-4,2760-2759[SIL];19-21,2744-2742[UP3]	...((((((((((((((..((&))..))))))))))))))...	CAAUAAAGAAGAUUUGCGAGG&CCAAGCGAAUCUUUUUUAAAU	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN11641_c0_g1_2753_TPlot.pdf
TRINITY_DN11641_c0_g1:2755	si_s601	TRINITY_DN11641_c0_g1	2744	2764	2755	-28.30	-20.50	0.724381625441696	7.5	2-4,2763-2761;7-20,2758-2745	1-1,2764-2764[UP5];5-6,2760-2759[SIL];21-21,2744-2744[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	AUAAAGAAGAUUUGCGAGGAA&AUCCAAGCGAAUCUUUUUUAA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN11641_c0_g1_2755_TPlot.pdf
TRINITY_DN11641_c0_g1:2888	si_a304	TRINITY_DN11641_c0_g1	2875	2897	2888	-30.40	-21.80	0.717105263157895	8.5	3-13,2895-2885;14-18,2883-2879;20-21,2876-2875	1-2,2897-2896[UP5];x-x,2884-2884[BULt];19-19,2878-2877[AILt]	((..(((((.(((((((((((..&..)))))))))))-)))))-.))	GAAGAGAUCUCGAGCGAGUCUGA&AAAGAUUCGCUUG-GAUUU-AUC	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN11641_c0_g1_2888_TPlot.pdf
TRINITY_DN11641_c0_g1:2892	si_a300	TRINITY_DN11641_c0_g1	2880	2901	2892	-28.20	-20.30	0.719858156028369	14	7-17,2895-2885;18-21,2883-2880	1-6,2901-2896[UP5];x-x,2884-2884[BULt]	((((.(((((((((((......&......)))))))))))-))))	GAUCUCGAGCGAGUCUGAAUGG&UAAAAAAGAUUCGCUUG-GAUU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN11641_c0_g1_2892_TPlot.pdf
TRINITY_DN11641_c0_g1:2895	si_a297	TRINITY_DN11641_c0_g1	2884	2904	2895	-27.20	-17.70	0.650735294117647	18.5	10-21,2895-2884	1-9,2904-2896[UP5]	((((((((((((.........&.........))))))))))))	UCGAGCGAGUCUGAAUGGACU&AUUUAAAAAAGAUUCGCUUGG	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN11641_c0_g1_2895_TPlot.pdf
TRINITY_DN11641_c0_g1:2958	si_s318	TRINITY_DN11641_c0_g1	2948	2967	2958	-32.80	-22.90	0.698170731707317	7.5	1-14,2967-2954;16-18,2953-2951	15-15,x-x[BULq];19-21,2950-2948[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	GACUUG-GACGAGGAGGGCAG&CUGUCCUUCUUGUUACAAACA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN11641_c0_g1_2958_TPlot.pdf
TRINITY_DN11641_c0_g1:2966	si_s310	TRINITY_DN11641_c0_g1	2955	2975	2966	-32.10	-22.60	0.70404984423676	14	7-21,2969-2955	1-6,2975-2970[UP5]	(((((((((((((((......&......)))))))))))))))	ACGAGGAGGGCAGAGCGCGCU&CGAAAAUUCUGUCCUUCUUGU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN11641_c0_g1_2966_TPlot.pdf
TRINITY_DN11641_c0_g1:2969	si_s307	TRINITY_DN11641_c0_g1	2958	2976	2969	-32.90	-21.58	0.655927051671732	13	3-5,2974-2972;10-21,2969-2958	1-2,2976-2975[UP5];6-9,2971-2970[AILq]	((((((((((((..--(((..&..)))....))))))))))))	AGGAGGGCAGAGCG--CGCUG&UUGCGAAAAUUCUGUCCUUCU	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN11641_c0_g1_2969_TPlot.pdf
TRINITY_DN11641_c0_g1:2972	si_s634	TRINITY_DN11641_c0_g1	2960	2982	2972	-38.30	-27.80	0.725848563968668	12.5	5-9,2978-2974;10-12,2972-2970;13-21,2968-2960	1-4,2982-2979[UP5];x-x,2973-2973[BULt];x-x,2969-2969[BULt]	(((((((((.(((.(((((....&....)))))-)))-)))))))))	GAGGGCAGAGCGCGCUGCGUGUG&UUUUCGUAG-GCG-UUUGCCCUC	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN11641_c0_g1_2972_TPlot.pdf
TRINITY_DN11641_c0_g1:3440	si_a495	TRINITY_DN11641_c0_g1	3424	3449	3440	-31.90	-23.20	0.727272727272727	18.5	5-12,3445-3438;13-21,3432-3424	1-4,3449-3446[UP5];x-x,3437-3433[BULt]	(((((((((.....((((((((....&....))))))))-----)))))))))	GGAGGACGAGAUGGAGAACGACGACU&AUAUGUCGUUUU-----UCGUCUUCC	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN11641_c0_g1_3440_TPlot.pdf
TRINITY_DN11644_c0_g1:1573	si_s20	TRINITY_DN11644_c0_g1	1563	1583	1573	-27.80	-18.90	0.679856115107914	9.5	1-8,1583-1576;10-16,1573-1567;18-21,1566-1563	9-9,1575-1574[AILt];17-17,x-x[BULq]	((((-(((((((..((((((((&))))))))-.))))))).))))	UUGG-UGCAGUCUUGUGUGGUA&UACUAUAU-UGAUUGCAACUAA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN11644_c0_g1_1573_TPlot.pdf
TRINITY_DN11644_c0_g1:1574	si_s19	TRINITY_DN11644_c0_g1	1564	1584	1574	-27.80	-18.50	0.665467625899281	9.5	1-9,1584-1576;11-17,1573-1567;19-21,1566-1564	10-10,1575-1574[AILt];18-18,x-x[BULq]	(((-(((((((..(((((((((&)))))))))-.))))))).)))	UGG-UGCAGUCUUGUGUGGUAG&UUACUAUAU-UGAUUGCAACUA	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN11644_c0_g1_1574_TPlot.pdf
TRINITY_DN11644_c0_g1:1579	si_s15	TRINITY_DN11644_c0_g1	1567	1588	1579	-25.60	-16.90	0.66015625	13	5-13,1584-1576;15-21,1573-1567	1-4,1588-1585[UP5];14-14,1575-1574[AILt]	(((((((..(((((((((....&....)))))))))-.)))))))	UGCAGUCUUGUGUGGUAGCUCA&AUUAUUACUAUAU-UGAUUGCA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN11644_c0_g1_1579_TPlot.pdf
TRINITY_DN11644_c0_g1:931	si_s795	TRINITY_DN11644_c0_g1	923	941	931	-30.30	-19.90	0.656765676567657	9.5	1-6,941-936;7-10,934-931;14-21,930-923	x-x,935-935[BULt];11-13,x-x[BULq]	((((((((---((((.((((((&))))))-))))...))))))))	GCGAAGAU---GUGCUGAGCUU&AAGCUC-GUAUUUUAUCUUCGU	4	0.999997290929464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN11644_c0_g1_931_TPlot.pdf
TRINITY_DN11645_c1_g1:109	si_s73	TRINITY_DN11645_c1_g1	98	118	109	-24.00	-18.28	0.761666666666667	11	1-3,118-116;7-21,112-98	4-6,115-113[SIL]	(((((((((((((((...(((&)))...)))))))))))))))	GAAGGAAGGAGAGGAGCGGGA&UCUAUUUUUUUUCUUUCCUUU	2	0.999919054515961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11645_c1_g1_109_TPlot.pdf
TRINITY_DN11645_c1_g1:120	si_s76	TRINITY_DN11645_c1_g1	108	129	120	-23.60	-20.40	0.864406779661017	5	1-15,129-115;16-21,113-108	x-x,114-114[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	GAGGAGCGGGAAGAAAGAAGAU&AUUUUUUUUCUUUCC-UUUCUU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11645_c1_g1_120_TPlot.pdf
TRINITY_DN11645_c1_g1:122	si_s74	TRINITY_DN11645_c1_g1	111	131	122	-25.00	-19.30	0.772	6	2-17,130-115;19-21,113-111	1-1,131-131[UP5];18-18,114-114[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GAGCGGGAAGAAAGAAGAUGU&CUAUUUUUUUUCUUUCCUUUC	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11645_c1_g1_122_TPlot.pdf
TRINITY_DN11645_c1_g1:85	si_a192	TRINITY_DN11645_c1_g1	74	95	85	-31.90	-22.70	0.711598746081505	8	1-9,95-87;10-15,85-80	x-x,86-86[BULt];16-21,79-74[UP3]	......((((((.(((((((((&)))))))))-))))))......	CCAAGUGUGAACGAGGGAAAGA&UCUUUCCCU-GUUCACUAAUAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN11645_c1_g1_85_TPlot.pdf
TRINITY_DN11645_c1_g1:87	si_a191	TRINITY_DN11645_c1_g1	75	96	87	-32.00	-23.70	0.740625	7	1-10,96-87;11-16,85-80	x-x,86-86[BULt];17-21,79-75[UP3]	.....((((((.((((((((((&))))))))))-)))))).....	CAAGUGUGAACGAGGGAAAGAU&AUCUUUCCCU-GUUCACUAAUA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN11645_c1_g1_87_TPlot.pdf
TRINITY_DN1164_c0_g1:1835	si_s182	TRINITY_DN1164_c0_g1	1824	1844	1835	-32.60	-23.00	0.705521472392638	6	2-13,1843-1832;15-16,1830-1829;18-21,1827-1824	1-1,1844-1844[UP5];14-14,1831-1831[SIL];17-17,1828-1828[SIL]	((((.((.((((((((((((.&.)))))))))))).)).))))	GGGUUGUGGUUACUUGGGCAG&AUGCCCGAGUAACGAUUAUUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN1164_c0_g1_1835_TPlot.pdf
TRINITY_DN1164_c0_g1:1836	si_s181	TRINITY_DN1164_c0_g1	1825	1845	1836	-34.60	-22.70	0.65606936416185	7.5	3-14,1843-1832;16-17,1830-1829;19-21,1827-1825	1-2,1845-1844[UP5];15-15,1831-1831[SIL];18-18,1828-1828[SIL]	(((.((.((((((((((((..&..)))))))))))).)).)))	GGUUGUGGUUACUUGGGCAGA&GAUGCCCGAGUAACGAUUAUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN1164_c0_g1_1836_TPlot.pdf
TRINITY_DN1164_c0_g1:4937	si_a19	TRINITY_DN1164_c0_g1	4925	4947	4937	-27.00	-17.60	0.651851851851852	11	1-7,4947-4941;9-18,4938-4929;19-21,4927-4925	8-8,4940-4939[AILt];x-x,4928-4928[BULt]	(((.((((((((((..(((((((&)))))))-.))))))))))-)))	GGAUGCUGAGAGUAUCGUGGGUU&AGCCUAU-UUAUUUUUAGU-UCU	2	0.999946983306736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1164_c0_g1_4937_TPlot.pdf
TRINITY_DN1164_c0_g1:4939	si_a17	TRINITY_DN1164_c0_g1	4928	4949	4939	-24.30	-16.50	0.679012345679012	13	3-9,4947-4941;11-20,4938-4929	1-2,4949-4948[UP5];10-10,4940-4939[AILt];21-21,4928-4928[UP3]	.((((((((((..(((((((..&..)))))))-.)))))))))).	UGCUGAGAGUAUCGUGGGUUGA&AAAGCCUAU-UUAUUUUUAGUU	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN1164_c0_g1_4939_TPlot.pdf
TRINITY_DN1164_c0_g1:4941	si_a16	TRINITY_DN1164_c0_g1	4929	4951	4941	-26.30	-17.10	0.650190114068441	13	1-2,4951-4950;4-10,4947-4941;12-21,4938-4929	3-3,4949-4948[AILt];11-11,4940-4939[AILt]	((((((((((..(((((((..((&))-.)))))))-.))))))))))	GCUGAGAGUAUCGUGGGUUGAUC&GA-AAGCCUAU-UUAUUUUUAGU	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1164_c0_g1_4941_TPlot.pdf
TRINITY_DN1164_c0_g1:4942	si_a317	TRINITY_DN1164_c0_g1	4931	4951	4942	-24.30	-18.20	0.748971193415638	7.5	1-4,4951-4948;6-14,4946-4938;16-21,4936-4931	5-5,4947-4947[SIL];15-15,4937-4937[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	UGAGAGUAUCGUGGGUUGAUC&GAUUUAUCCAUGAUUUUUUUA	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1164_c0_g1_4942_TPlot.pdf
TRINITY_DN1164_c0_g2:857	si_a19	TRINITY_DN1164_c0_g2	845	867	857	-27.00	-17.60	0.651851851851852	11	1-7,867-861;9-18,858-849;19-21,847-845	8-8,860-859[AILt];x-x,848-848[BULt]	(((.((((((((((..(((((((&)))))))-.))))))))))-)))	GGAUGCUGAGAGUAUCGUGGGUU&AGCCUAU-UUAUUUUUAGU-UCU	2	0.999944277087014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1164_c0_g2_857_TPlot.pdf
TRINITY_DN1164_c0_g2:859	si_a17	TRINITY_DN1164_c0_g2	848	869	859	-24.30	-16.50	0.679012345679012	13	3-9,867-861;11-20,858-849	1-2,869-868[UP5];10-10,860-859[AILt];21-21,848-848[UP3]	.((((((((((..(((((((..&..)))))))-.)))))))))).	UGCUGAGAGUAUCGUGGGUUGA&AAAGCCUAU-UUAUUUUUAGUU	2	0.999526037110807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN1164_c0_g2_859_TPlot.pdf
TRINITY_DN1164_c0_g2:861	si_a16	TRINITY_DN1164_c0_g2	849	871	861	-26.30	-17.10	0.650190114068441	13	1-2,871-870;4-10,867-861;12-21,858-849	3-3,869-868[AILt];11-11,860-859[AILt]	((((((((((..(((((((..((&))-.)))))))-.))))))))))	GCUGAGAGUAUCGUGGGUUGAUC&GA-AAGCCUAU-UUAUUUUUAGU	2	0.995656031900421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1164_c0_g2_861_TPlot.pdf
TRINITY_DN1164_c0_g2:862	si_a317	TRINITY_DN1164_c0_g2	851	871	862	-24.30	-18.20	0.748971193415638	7.5	1-4,871-868;6-14,866-858;16-21,856-851	5-5,867-867[SIL];15-15,857-857[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	UGAGAGUAUCGUGGGUUGAUC&GAUUUAUCCAUGAUUUUUUUA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1164_c0_g2_862_TPlot.pdf
TRINITY_DN1164_c1_g1:2167	si_a619	TRINITY_DN1164_c1_g1	2156	2176	2167	-35.10	-24.80	0.706552706552707	5	2-13,2175-2164;15-18,2162-2159;20-21,2157-2156	1-1,2176-2176[UP5];14-14,2163-2163[SIL];19-19,2158-2158[SIL]	((.((((.((((((((((((.&.)))))))))))).)))).))	GAGAUAGGGCGCUUAGUCGAC&AUCGACUAGGCGUAUUAUGUC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a619_TRINITY_DN1164_c1_g1_2167_TPlot.pdf
TRINITY_DN11650_c3_g2:164	si_a403	TRINITY_DN11650_c3_g2	152	173	164	-22.00	-16.80	0.763636363636364	5.5	2-11,172-163;12-21,161-152	1-1,173-173[UP5];x-x,162-162[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAAUAUGAACGAAAACAGUUUA&AGAAUUGUUUU-GUUUAUAUUU	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11650_c3_g2_164_TPlot.pdf
TRINITY_DN11651_c0_g2:415	si_a783	TRINITY_DN11651_c0_g2	404	424	415	-24.70	-19.70	0.797570850202429	8.5	3-17,422-408	1-2,424-423[UP5];18-21,407-404[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCGAGGAAAAAUGGAAGAGAA&AACUCUUCUAUUUUUCUAUUU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN11651_c0_g2_415_TPlot.pdf
TRINITY_DN1165_c0_g1:5220	si_s420	TRINITY_DN1165_c0_g1	5209	5229	5220	-23.70	-16.90	0.713080168776371	8.5	1-4,5229-5226;6-17,5224-5213	5-5,5225-5225[SIL];18-21,5212-5209[UP3]	....((((((((((((.((((&)))).))))))))))))....	UGGCUGUUGUGUAGAACGUGU&ACAUAUUCUAUAUAACAAUAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s420_TRINITY_DN1165_c0_g1_5220_TPlot.pdf
TRINITY_DN11661_c0_g1:2344	si_s659	TRINITY_DN11661_c0_g1	2332	2353	2344	-36.70	-24.30	0.662125340599455	7	1-2,2353-2352;4-10,2350-2344;11-13,2342-2340;16-21,2337-2332	3-3,2351-2351[SIL];x-x,2343-2343[BULt];14-15,2339-2338[SIL]	((((((..(((.(((((((.((&)).)))))))-)))..))))))	GUCAGUCAGAUACCCCCGACUG&CAAUCGGGGG-AUCGAAUUGAU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s659_TRINITY_DN11661_c0_g1_2344_TPlot.pdf
TRINITY_DN11661_c0_g1:2345	si_s658	TRINITY_DN11661_c0_g1	2333	2354	2345	-37.30	-24.70	0.662198391420912	6.5	1-3,2354-2352;5-11,2350-2344;12-14,2342-2340;17-21,2337-2333	4-4,2351-2351[SIL];x-x,2343-2343[BULt];15-16,2339-2338[SIL]	(((((..(((.(((((((.(((&))).)))))))-)))..)))))	UCAGUCAGAUACCCCCGACUGU&ACAAUCGGGGG-AUCGAAUUGA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s658_TRINITY_DN11661_c0_g1_2345_TPlot.pdf
TRINITY_DN11661_c0_g1:2346	si_s657	TRINITY_DN11661_c0_g1	2334	2355	2346	-36.70	-24.00	0.653950953678474	6.5	1-4,2355-2352;6-12,2350-2344;13-15,2342-2340;18-21,2337-2334	5-5,2351-2351[SIL];x-x,2343-2343[BULt];16-17,2339-2338[SIL]	((((..(((.(((((((.((((&)))).)))))))-)))..))))	CAGUCAGAUACCCCCGACUGUA&UACAAUCGGGGG-AUCGAAUUG	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s657_TRINITY_DN11661_c0_g1_2346_TPlot.pdf
TRINITY_DN11661_c0_g1:2590	si_s69	TRINITY_DN11661_c0_g1	2577	2599	2590	-23.40	-16.80	0.717948717948718	5	2-15,2598-2585;16-20,2582-2578	1-1,2599-2599[UP5];x-x,2584-2583[BULt];21-21,2577-2577[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	AGAAGAUCAAGAAAAUAGAAGUC&AACUUCUAUUUUUUU--UCUUUC	3	0.999999999999821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11661_c0_g1_2590_TPlot.pdf
TRINITY_DN1166_c0_g1:480	si_a498	TRINITY_DN1166_c0_g1	464	488	480	-33.50	-22.20	0.662686567164179	9	2-9,487-480;11-17,479-473;18-21,467-464	1-1,488-488[UP5];10-10,x-x[BULq];x-x,472-468[BULt]	((((.....(((((((-((((((((.&.)))))))).)))))))-----))))	CAAGAAAUAGAAGACG-AAGACGACG&UGUCGUUUUUCGUCUUC-----CUUG	2	0.999999950791193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1166_c0_g1_480_TPlot.pdf
TRINITY_DN1166_c0_g1:481	si_a496	TRINITY_DN1166_c0_g1	471	490	481	-32.40	-21.40	0.660493827160494	10	4-11,487-480;13-19,479-473	1-3,490-488[UP5];12-12,x-x[BULq];20-21,472-471[UP3]	..(((((((-((((((((...&...)))))))).)))))))..	UAGAAGACG-AAGACGACGAA&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999999434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1166_c0_g1_481_TPlot.pdf
TRINITY_DN1166_c0_g1:646	si_a509	TRINITY_DN1166_c0_g1	635	655	646	-37.30	-25.70	0.689008042895442	7	2-11,654-645;14-16,642-640;19-21,637-635	1-1,655-655[UP5];12-13,644-643[SIL];17-18,639-638[SIL]	(((..(((..((((((((((.&.))))))))))..)))..)))	GCCGAACAAGCCGAGGAAGAA&GUCUUCCUUGGAAUGUAAGGC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN1166_c0_g1_646_TPlot.pdf
TRINITY_DN1166_c0_g1:652	si_a503	TRINITY_DN1166_c0_g1	641	662	652	-32.10	-21.50	0.669781931464174	7.5	1-6,662-657;8-17,654-645;20-21,642-641	7-7,656-655[AILt];18-19,644-643[SIL]	((..((((((((((..((((((&))))))-.))))))))))..))	CAAGCCGAGGAAGAAAGGAAAA&UUUUUC-GUCUUCCUUGGAAUG	3	0.999999760239991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1166_c0_g1_652_TPlot.pdf
TRINITY_DN1166_c0_g1:654	si_s84	TRINITY_DN1166_c0_g1	637	663	654	-32.30	-22.20	0.687306501547988	9.5	3-17,661-647;18-21,640-637	1-2,663-662[UP5];x-x,646-641[BULt]	((((......(((((((((((((((..&..)))))))))))))))------))))	CGAACAAGCCGAGGAAGAAAGGAAAAA&UCUUUCCUUUCUUCUUC------UUCG	2	0.999999993687965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1166_c0_g1_654_TPlot.pdf
TRINITY_DN1166_c0_g1:656	si_s82	TRINITY_DN1166_c0_g1	645	665	656	-28.90	-22.10	0.764705882352941	9.5	5-19,661-647	1-4,665-662[UP5];20-21,646-645[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCGAGGAAGAAAGGAAAAAAC&UUUCUUUCCUUUCUUCUUCUU	4	0.999999602727879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1166_c0_g1_656_TPlot.pdf
TRINITY_DN1166_c0_g1:657	si_s81	TRINITY_DN1166_c0_g1	646	672	657	-28.90	-22.50	0.778546712802768	15.5	1-7,672-666;8-20,659-647	x-x,665-660[BULt];21-21,646-646[UP3]	.(((((((((((((......(((((((&)))))))------))))))))))))).	CGAGGAAGAAAGGAAAAAACAAGAGGA&UUUUCUU------UCCUUUCUUCUUCU	3	0.999989219606595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1166_c0_g1_657_TPlot.pdf
TRINITY_DN1166_c0_g1:658	si_s80	TRINITY_DN1166_c0_g1	647	673	658	-28.20	-23.10	0.819148936170213	14.5	1-8,673-666;9-21,659-647	x-x,665-660[BULt]	(((((((((((((......((((((((&))))))))------)))))))))))))	GAGGAAGAAAGGAAAAAACAAGAGGAA&UUUUUCUU------UCCUUUCUUCUUC	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1166_c0_g1_658_TPlot.pdf
TRINITY_DN1166_c0_g1:659	si_s79	TRINITY_DN1166_c0_g1	648	674	659	-26.20	-20.70	0.790076335877863	14.5	1-9,674-666;10-21,659-648	x-x,665-660[BULt]	((((((((((((......(((((((((&)))))))))------))))))))))))	AGGAAGAAAGGAAAAAACAAGAGGAAA&UUUUUUCUU------UCCUUUCUUCUU	2	0.999751875834929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1166_c0_g1_659_TPlot.pdf
TRINITY_DN1166_c0_g1:661	si_s77	TRINITY_DN1166_c0_g1	650	670	661	-25.50	-16.60	0.650980392156863	17	10-21,661-650	1-9,670-662[UP5]	((((((((((((.........&.........))))))))))))	GAAGAAAGGAAAAAACAAGAG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1166_c0_g1_661_TPlot.pdf
TRINITY_DN1166_c0_g1:664	si_s69	TRINITY_DN1166_c0_g1	653	673	664	-23.40	-16.20	0.692307692307692	8.5	3-7,671-667;10-21,664-653	1-2,673-672[UP5];8-9,666-665[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GAAAGGAAAAAACAAGAGGAA&AACUUCUAUUUUUUUUCUUUC	2	0.99999999999932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1166_c0_g1_664_TPlot.pdf
TRINITY_DN1166_c0_g1:666	si_s78	TRINITY_DN1166_c0_g1	649	675	666	-26.20	-20.80	0.793893129770992	14.5	1-10,675-666;11-21,659-649	x-x,665-660[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	GGAAGAAAGGAAAAAACAAGAGGAAAA&UUUUUUUCUU------UCCUUUCUUCU	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1166_c0_g1_666_TPlot.pdf
TRINITY_DN1166_c0_g1:667	si_s77	TRINITY_DN1166_c0_g1	650	676	667	-25.50	-20.10	0.788235294117647	14.5	1-11,676-666;12-21,659-650	x-x,665-660[BULt]	((((((((((......(((((((((((&)))))))))))------))))))))))	GAAGAAAGGAAAAAACAAGAGGAAAAG&UUUUUUUUCUU------UCCUUUCUUC	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1166_c0_g1_667_TPlot.pdf
TRINITY_DN1166_c0_g1:668	si_s76	TRINITY_DN1166_c0_g1	651	677	668	-23.60	-16.90	0.716101694915254	16	2-12,676-666;13-21,659-651	1-1,677-677[UP5];x-x,665-660[BULt]	(((((((((......(((((((((((.&.)))))))))))------)))))))))	AAGAAAGGAAAAAACAAGAGGAAAAGG&AUUUUUUUUCUU------UCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1166_c0_g1_668_TPlot.pdf
TRINITY_DN1166_c0_g1:669	si_s75	TRINITY_DN1166_c0_g1	652	678	669	-24.00	-16.00	0.666666666666667	12	3-13,676-666;14-21,659-652	1-2,678-677[UP5];x-x,665-660[BULt]	((((((((......(((((((((((..&..)))))))))))------))))))))	AGAAAGGAAAAAACAAGAGGAAAAGGA&UAUUUUUUUUCUU------UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1166_c0_g1_669_TPlot.pdf
TRINITY_DN1166_c0_g1:795	si_s81	TRINITY_DN1166_c0_g1	784	811	795	-28.90	-21.50	0.743944636678201	17	1-9,811-803;10-21,795-784	x-x,802-796[BULt]	((((((((((((.......(((((((((&)))))))))-------))))))))))))	AGAAGAAGAAGGUUAUGAAGAAGGAGAA&UUUUCUUUC-------CUUUCUUCUUCU	3	0.999999999137702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1166_c0_g1_795_TPlot.pdf
TRINITY_DN1166_c0_g1:801	si_s78	TRINITY_DN1166_c0_g1	787	810	801	-26.20	-17.34	0.661832061068702	12.5	1-11,810-800;13-21,795-787	12-12,799-796[AILt]	(((((((((....(((((((((((&)))))))))))---.)))))))))	AGAAGAAGGUUAUGAAGAAGGAGA&UUUUUUUCUUU---CCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1166_c0_g1_801_TPlot.pdf
TRINITY_DN11677_c3_g1:251	si_a410	TRINITY_DN11677_c3_g1	240	260	251	-17.80	-12.30	0.691011235955056	7.5	2-14,259-247;16-19,245-242	1-1,260-260[UP5];15-15,246-246[SIL];20-21,241-240[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UCUGUUAAAAUGUGAACAAGC&UUUUGUUUAUAUUUAAAUAAA	4	0.999999990527863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN11677_c3_g1_251_TPlot.pdf
TRINITY_DN11679_c1_g1:555	si_a402	TRINITY_DN11679_c1_g1	544	564	555	-22.40	-16.50	0.736607142857143	7.5	1-14,564-551	15-21,550-544[UP3]	.......((((((((((((((&)))))))))))))).......	AUUGCUUGCAAAACAAUUCUA&UAGAAUUGUUUUGUUUAUAUU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN11679_c1_g1_555_TPlot.pdf
TRINITY_DN11679_c1_g1:559	si_a398	TRINITY_DN11679_c1_g1	548	568	559	-22.40	-16.50	0.736607142857143	10.5	5-18,564-551	1-4,568-565[UP5];19-21,550-548[UP3]	...((((((((((((((....&....))))))))))))))...	CUUGCAAAACAAUUCUAACUA&AAUAUAGAAUUGUUUUGUUUA	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN11679_c1_g1_559_TPlot.pdf
TRINITY_DN11685_c0_g1:859	si_a488	TRINITY_DN11685_c0_g1	848	869	859	-26.40	-17.30	0.65530303030303	7	1-9,869-861;11-19,858-850	10-10,860-859[AILt];20-21,849-848[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	CCGAAAUGACAAGAUUCUAUAU&AUAUAGAAU-AUGUCGUUUUUC	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN11685_c0_g1_859_TPlot.pdf
TRINITY_DN11685_c0_g1:861	si_a487	TRINITY_DN11685_c0_g1	849	870	861	-24.80	-17.30	0.69758064516129	7	2-10,869-861;12-20,858-850	1-1,870-870[UP5];11-11,860-859[AILt];21-21,849-849[UP3]	.(((((((((..(((((((((.&.)))))))))-.))))))))).	CGAAAUGACAAGAUUCUAUAUU&UAUAUAGAAU-AUGUCGUUUUU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN11685_c0_g1_861_TPlot.pdf
TRINITY_DN11685_c0_g1:862	si_a486	TRINITY_DN11685_c0_g1	850	871	862	-24.90	-17.30	0.694779116465864	8	3-11,869-861;13-21,858-850	1-2,871-870[UP5];12-12,860-859[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	GAAAUGACAAGAUUCUAUAUUU&UUAUAUAGAAU-AUGUCGUUUU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN11685_c0_g1_862_TPlot.pdf
TRINITY_DN11685_c0_g1:870	si_a389	TRINITY_DN11685_c0_g1	859	879	870	-25.50	-17.60	0.690196078431373	6.5	1-4,879-876;7-20,873-860	5-6,875-874[SIL];21-21,859-859[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGAUUCUAUAUUUUUUCUUCG&CGAAUUAAGAAUAUAGAAUUG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a389_TRINITY_DN11685_c0_g1_870_TPlot.pdf
TRINITY_DN11687_c0_g1:320	si_a248	TRINITY_DN11687_c0_g1	311	329	320	-40.20	-26.20	0.651741293532338	7	1-11,329-319;15-18,317-314;20-21,312-311	12-14,318-318[AILq];19-19,313-313[SIL]	((.((((.--(((((((((((&)))))))))))...)))).))	CUGGGUGU--UCGGGGGGUCG&CGAUCCCCCGAUUGUAUCGAG	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a248_TRINITY_DN11687_c0_g1_320_TPlot.pdf
TRINITY_DN11688_c0_g1:1043	si_a77	TRINITY_DN11688_c0_g1	1031	1052	1043	-22.20	-16.42	0.73963963963964	7.5	1-11,1052-1042;15-21,1037-1031	12-14,1041-1038[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	UCUUGAUUAGGGAAAGACAAUU&AAUUGUUUUUC-AUUAUUAAGA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN11688_c0_g1_1043_TPlot.pdf
TRINITY_DN11688_c0_g1:1048	si_a182	TRINITY_DN11688_c0_g1	1037	1058	1048	-31.80	-21.20	0.666666666666667	6.5	2-9,1057-1050;11-20,1047-1038	1-1,1058-1058[UP5];10-10,1049-1048[AILt];21-21,1037-1037[UP3]	.((((((((((..((((((((.&.))))))))-.)))))))))).	UUAGGGAAAGACAAUUAUCUAU&CUAGAUAAU-AUCUUUCCCUGU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN11688_c0_g1_1048_TPlot.pdf
TRINITY_DN11688_c0_g1:3907	si_a492	TRINITY_DN11688_c0_g1	3896	3916	3907	-30.20	-19.70	0.652317880794702	11	5-18,3912-3899;20-21,3897-3896	1-4,3916-3913[UP5];19-19,3898-3898[SIL]	((.((((((((((((((....&....)))))))))))))).))	AGUCGGAAGACGGCAUGGAUG&AGAAUAUGUCGUUUUUCGUCU	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN11688_c0_g1_3907_TPlot.pdf
TRINITY_DN1168_c0_g1:2989	si_s799	TRINITY_DN1168_c0_g1	2978	2999	2989	-30.00	-19.56	0.652	16	1-4,2999-2996;11-21,2988-2978	5-10,2995-2989[AILt]	(((((((((((.......((((&))))-......)))))))))))	GGUGGCGAAGAACAACAAGCGA&UCGU-AUUUUAUCUUCGUUACC	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN1168_c0_g1_2989_TPlot.pdf
TRINITY_DN1168_c1_g1:368	si_a423	TRINITY_DN1168_c1_g1	357	377	368	-27.10	-18.10	0.66789667896679	17	8-20,370-358	1-7,377-371[UP5];21-21,357-357[UP3]	.(((((((((((((.......&.......))))))))))))).	UGCGGAUCUUGUGUGUCUUUG&UAAAUAAAUAUAGGAUCCGUU	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a423_TRINITY_DN1168_c1_g1_368_TPlot.pdf
TRINITY_DN1168_c2_g2:682	si_s815	TRINITY_DN1168_c2_g2	670	691	682	-25.00	-16.60	0.664	11.5	1-10,691-682;11-19,680-672	x-x,681-681[BULt];20-21,671-670[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AGCAUUAUUGGCGGGGGGGUGG&UUACCUUUUC-UUAAUAAUGAA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN1168_c2_g2_682_TPlot.pdf
TRINITY_DN1168_c2_g2:687	si_a557	TRINITY_DN1168_c2_g2	676	696	687	-33.40	-22.20	0.664670658682635	13.5	5-17,692-680;19-21,678-676	1-4,696-693[UP5];18-18,679-679[SIL]	(((.(((((((((((((....&....))))))))))))).)))	AUUGGCGGGGGGGUGGGUAGC&UUUCUUUAUCUCCCCGUGAAU	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN1168_c2_g2_687_TPlot.pdf
TRINITY_DN11694_c0_g1:94	si_a186	TRINITY_DN11694_c0_g1	83	103	94	-31.50	-21.40	0.679365079365079	15	8-19,96-85	1-7,103-97[UP5];20-21,84-83[UP3]	..((((((((((((.......&.......))))))))))))..	AGGAACAGGGAAAGGAAUAAU&AUAAUAUCUUUCCCUGUUCAC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN11694_c0_g1_94_TPlot.pdf
TRINITY_DN11694_c3_g1:366	si_a603	TRINITY_DN11694_c3_g1	355	374	366	-29.80	-19.70	0.661073825503356	6	2-7,373-368;9-17,367-359;19-21,357-355	1-1,374-374[UP5];8-8,x-x[BULq];18-18,358-358[SIL]	(((.(((((((((-((((((.&.)))))).))))))))).)))	UCGUUUGGAAUUG-GAGGAUG&AAUUUUCGCAAUUCCAAUCGA	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN11694_c3_g1_366_TPlot.pdf
TRINITY_DN11695_c0_g1:871	si_s407	TRINITY_DN11695_c0_g1	859	880	871	-29.50	-21.10	0.715254237288136	4.5	1-13,880-868;14-19,866-861	x-x,867-867[BULt];20-21,860-859[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UUGUAUGUCCGUUUUUUGUCUU&AAGACGAAAAACG-ACAUAUUC	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s407_TRINITY_DN11695_c0_g1_871_TPlot.pdf
TRINITY_DN11695_c0_g1:872	si_s406	TRINITY_DN11695_c0_g1	860	881	872	-29.50	-22.40	0.759322033898305	4	1-14,881-868;15-20,866-861	x-x,867-867[BULt];21-21,860-860[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	UGUAUGUCCGUUUUUUGUCUUU&GAAGACGAAAAACG-ACAUAUU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s406_TRINITY_DN11695_c0_g1_872_TPlot.pdf
TRINITY_DN11695_c0_g1:875	si_s403	TRINITY_DN11695_c0_g1	863	884	875	-32.00	-22.70	0.709375	6	3-17,882-868;18-21,866-863	1-2,884-883[UP5];x-x,867-867[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	AUGUCCGUUUUUUGUCUUUCAU&AAGGAAGACGAAAAACG-ACAU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s403_TRINITY_DN11695_c0_g1_875_TPlot.pdf
TRINITY_DN11695_c0_g1:887	si_s819	TRINITY_DN11695_c0_g1	876	901	887	-23.00	-15.20	0.660869565217391	13	1-7,901-895;8-18,889-879;20-21,877-876	x-x,894-890[BULt];19-19,878-878[SIL]	((.(((((((((((.....(((((((&)))))))-----))))))))))).))	GUCUUUCAUUAUUAUACAAAGGAGAG&CUUUUCU-----UAAUAAUGAAAAAC	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN11695_c0_g1_887_TPlot.pdf
TRINITY_DN11695_c0_g1:888	si_s818	TRINITY_DN11695_c0_g1	877	902	888	-23.70	-17.90	0.755274261603376	14	1-8,902-895;9-19,889-879	x-x,894-890[BULt];20-21,878-877[UP3]	..(((((((((((.....((((((((&))))))))-----)))))))))))..	UCUUUCAUUAUUAUACAAAGGAGAGG&CCUUUUCU-----UAAUAAUGAAAAA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN11695_c0_g1_888_TPlot.pdf
TRINITY_DN11695_c0_g1:889	si_s817	TRINITY_DN11695_c0_g1	878	904	889	-24.50	-18.80	0.76734693877551	16	1-9,904-896;10-20,889-879	x-x,895-890[BULt];21-21,878-878[UP3]	.(((((((((((......(((((((((&)))))))))------))))))))))).	CUUUCAUUAUUAUACAAAGGAGAGGGU&ACCUUUUCU------UAAUAAUGAAAA	0	0.00896491987738746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN11695_c0_g1_889_TPlot.pdf
TRINITY_DN11696_c0_g1:1263	si_a636	TRINITY_DN11696_c0_g1	1252	1272	1263	-26.30	-17.40	0.661596958174905	9.5	2-7,1271-1266;9-17,1264-1256	1-1,1272-1272[UP5];8-8,1265-1265[SIL];18-21,1255-1252[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	UGAAACUUAAAGAUGUCGACG&UGUCGAUUUUUUUGAGUAAUA	2	0.999996654681886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN11696_c0_g1_1263_TPlot.pdf
TRINITY_DN11696_c0_g1:1362	si_a713	TRINITY_DN11696_c0_g1	1351	1371	1362	-29.60	-19.54	0.660135135135135	11	1-5,1371-1367;11-21,1361-1351	6-10,1366-1362[SIL]	(((((((((((.....(((((&))))).....)))))))))))	UGGGUAACGAUCCAAGUGGAA&UUCCAAAAUAAUCGUUACUCG	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a713_TRINITY_DN11696_c0_g1_1362_TPlot.pdf
TRINITY_DN11696_c0_g1:596	si_a837	TRINITY_DN11696_c0_g1	585	605	596	-25.80	-18.40	0.713178294573643	8	2-4,604-602;7-19,599-587	1-1,605-605[UP5];5-6,601-600[SIL];20-21,586-585[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	UCUGGCGACUUCUAUGAUUUG&AAAAAAAUAGAAGUUGCUAAC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN11696_c0_g1_596_TPlot.pdf
TRINITY_DN11696_c0_g1:932	si_a200	TRINITY_DN11696_c0_g1	922	940	932	-29.20	-19.38	0.663698630136986	10.5	1-9,940-932;14-19,929-924	10-13,931-930[AILq];20-21,923-922[UP3]	..((((((..--(((((((((&)))))))))....))))))..	AUGUCGGUGG--UGGUGAACA&UGUUCACUAAUAAAUCGACUA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN11696_c0_g1_932_TPlot.pdf
TRINITY_DN1169_c0_g1:659	si_a794	TRINITY_DN1169_c0_g1	648	672	659	-28.60	-19.00	0.664335664335664	14	1-8,672-665;9-18,660-651	x-x,664-661[BULt];19-21,650-648[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	ACAGGAUUGGGAAAAUAGUAGGAAA&UUUUCUAU----UUUCCAAUCCGAA	2	0.997326500109187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1169_c0_g1_659_TPlot.pdf
TRINITY_DN1169_c0_g2:3310	si_a409	TRINITY_DN1169_c0_g2	3299	3319	3310	-19.50	-13.10	0.671794871794872	10	1-8,3319-3312;11-17,3309-3303	9-10,3311-3310[SIL];18-21,3302-3299[UP3]	....(((((((..((((((((&))))))))..)))))))....	CUAAUUGAGUAGUGACAAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999991863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1169_c0_g2_3310_TPlot.pdf
TRINITY_DN11703_c0_g1:321	si_a403	TRINITY_DN11703_c0_g1	310	330	321	-22.00	-15.80	0.718181818181818	7.5	1-16,330-315	17-21,314-310[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACGUUUAAGCAAGACAAUUUU&AGAAUUGUUUUGUUUAUAUUU	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11703_c0_g1_321_TPlot.pdf
TRINITY_DN11708_c0_g1:712	si_a437	TRINITY_DN11708_c0_g1	701	722	712	-31.90	-21.30	0.667711598746082	7.5	2-4,721-719;5-18,717-704	1-1,722-722[UP5];x-x,718-718[BULt];19-21,703-701[UP3]	...((((((((((((((.(((.&.)))-))))))))))))))...	AGCAUCUUAUAUCCAAUAGGAG&AUCC-GUUGGAUAUGAGAUAAU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a437_TRINITY_DN11708_c0_g1_712_TPlot.pdf
TRINITY_DN11710_c0_g1:1598	si_a318	TRINITY_DN11710_c0_g1	1587	1607	1598	-22.50	-15.00	0.666666666666667	10	1-12,1607-1596	13-21,1595-1587[UP3]	.........((((((((((((&)))))))))))).........	UAAAUGCCUUCAUGGAUGAAU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999999876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN11710_c0_g1_1598_TPlot.pdf
TRINITY_DN11710_c0_g1:1599	si_a317	TRINITY_DN11710_c0_g1	1588	1608	1599	-24.30	-16.30	0.670781893004115	9.5	1-13,1608-1596	14-21,1595-1588[UP3]	........(((((((((((((&)))))))))))))........	AAAUGCCUUCAUGGAUGAAUU&GAUUUAUCCAUGAUUUUUUUA	2	0.999973919801513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN11710_c0_g1_1599_TPlot.pdf
TRINITY_DN11711_c0_g1:1205	si_s523	TRINITY_DN11711_c0_g1	1196	1213	1205	-24.50	-17.40	0.710204081632653	9	1-9,1213-1205;13-21,1204-1196	10-12,x-x[BULq]	(((((((((---(((((((((&)))))))))...)))))))))	CAGAGAUGA---CGAGUUGAG&CUUAAUUCGAAAUCAUUUUUG	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN11711_c0_g1_1205_TPlot.pdf
TRINITY_DN11711_c0_g1:1868	si_s660	TRINITY_DN11711_c0_g1	1857	1879	1868	-35.00	-22.80	0.651428571428571	13	5-6,1875-1874;7-19,1871-1859	1-4,1879-1876[UP5];x-x,1873-1872[BULt];20-21,1858-1857[UP3]	..(((((((((((((..((....&....))--)))))))))))))..	GCUCAAUUCGAUCCCAUCCUCCA&AAUCGG--GGGAUCGAAUUGAUU	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN11711_c0_g1_1868_TPlot.pdf
TRINITY_DN11711_c0_g1:2831	si_a364	TRINITY_DN11711_c0_g1	2821	2841	2831	-27.70	-18.40	0.664259927797834	5.5	1-7,2841-2835;8-14,2833-2827;17-21,2825-2821	x-x,2834-2834[BULt];15-16,2826-2826[AILq]	(((((.-(((((((.(((((((&)))))))-)))))))..)))))	CAUUUC-GGUCCGACUCAGAAU&AUUUUGA-UCGGAUCAAAAAUG	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN11711_c0_g1_2831_TPlot.pdf
TRINITY_DN11711_c0_g1:2840	si_a356	TRINITY_DN11711_c0_g1	2828	2849	2840	-26.90	-18.50	0.687732342007435	13.5	6-15,2844-2835;16-21,2833-2828	1-5,2849-2845[UP5];x-x,2834-2834[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	GUCCGACUCAGAAUGGGCAGCG&UUAAUUCUAUUUUGA-UCGGAU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN11711_c0_g1_2840_TPlot.pdf
TRINITY_DN11711_c0_g1:3141	si_s599	TRINITY_DN11711_c0_g1	3130	3151	3141	-27.80	-20.20	0.726618705035971	8.5	2-7,3150-3145;8-16,3143-3135	1-1,3151-3151[UP5];x-x,3144-3144[BULt];17-21,3134-3130[UP3]	.....(((((((((.((((((.&.))))))-))))))))).....	CCAUCGGAUUCGCUGUGGAUUA&AAAUCCA-AGCGAAUCUUUUUU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN11711_c0_g1_3141_TPlot.pdf
TRINITY_DN11711_c0_g1:3142	si_s598	TRINITY_DN11711_c0_g1	3131	3152	3142	-28.20	-20.20	0.716312056737589	9.5	3-8,3150-3145;9-17,3143-3135	1-2,3152-3151[UP5];x-x,3144-3144[BULt];18-21,3134-3131[UP3]	....(((((((((.((((((..&..))))))-)))))))))....	CAUCGGAUUCGCUGUGGAUUAC&UAAAUCCA-AGCGAAUCUUUUU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN11711_c0_g1_3142_TPlot.pdf
TRINITY_DN11711_c0_g1:3147	si_s594	TRINITY_DN11711_c0_g1	3135	3156	3147	-33.50	-24.30	0.725373134328358	7.5	2-4,3155-3153;7-12,3150-3145;13-21,3143-3135	1-1,3156-3156[UP5];5-6,3152-3151[SIL];x-x,3144-3144[BULt]	(((((((((.((((((..(((.&.)))..))))))-)))))))))	GGAUUCGCUGUGGAUUACUCCG&UGGAUAAAUCCA-AGCGAAUCU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s594_TRINITY_DN11711_c0_g1_3147_TPlot.pdf
TRINITY_DN11711_c0_g1:3640	si_a502	TRINITY_DN11711_c0_g1	3629	3649	3640	-32.10	-26.70	0.831775700934579	6	1-16,3649-3634;18-19,3632-3631	17-17,3633-3633[SIL];20-21,3630-3629[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	CGUCGAAGGGGGACGAAGAAC&GUUUUUCGUCUUCCUUGGAAU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN11711_c0_g1_3640_TPlot.pdf
TRINITY_DN11711_c0_g1:469	si_s92	TRINITY_DN11711_c0_g1	458	479	469	-34.90	-24.80	0.710601719197708	8	1-6,479-474;7-18,472-461	x-x,473-473[BULt];19-21,460-458[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	AAGCGAGGCGAGGAACGAAGGG&UUCUUC-UUCUUCGCUUCGGAU	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN11711_c0_g1_469_TPlot.pdf
TRINITY_DN11711_c0_g1:5278	si_a493	TRINITY_DN11711_c0_g1	5266	5287	5278	-29.50	-19.20	0.650847457627119	8.5	1-2,5287-5286;4-12,5284-5276;14-18,5274-5270;19-20,5268-5267	3-3,5285-5285[SIL];13-13,5275-5275[SIL];x-x,5269-5269[BULt];21-21,5266-5266[UP3]	.((.(((((.(((((((((.((&)).))))))))).)))))-)).	CGGAACGAAUGACGACGUGAUC&GAAUAUGUCGUUUUUCGU-CUU	3	0.999999994333769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN11711_c0_g1_5278_TPlot.pdf
TRINITY_DN11711_c0_g1:5300	si_a761	TRINITY_DN11711_c0_g1	5289	5309	5300	-30.10	-22.40	0.744186046511628	8	2-18,5308-5292	1-1,5309-5309[UP5];19-21,5291-5289[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UCGCAAUCAGAAGCUCAGAGU&CCUUUGGGUUUUUGAUUGAUU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN11711_c0_g1_5300_TPlot.pdf
TRINITY_DN11711_c0_g1:5301	si_a760	TRINITY_DN11711_c0_g1	5290	5310	5301	-31.10	-22.40	0.720257234726688	8.5	3-19,5308-5292	1-2,5310-5309[UP5];20-21,5291-5290[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CGCAAUCAGAAGCUCAGAGUC&UCCUUUGGGUUUUUGAUUGAU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN11711_c0_g1_5301_TPlot.pdf
TRINITY_DN11711_c1_g1:1007	si_a300	TRINITY_DN11711_c1_g1	996	1016	1007	-28.20	-18.60	0.659574468085106	17	7-18,1010-999	1-6,1016-1011[UP5];19-21,998-996[UP3]	...((((((((((((......&......))))))))))))...	UUACCGGGCGGGUCUGGCGCG&UAAAAAAGAUUCGCUUGGAUU	4	0.999693963058563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN11711_c1_g1_1007_TPlot.pdf
TRINITY_DN11711_c1_g1:1269	si_s243	TRINITY_DN11711_c1_g1	1258	1279	1269	-33.80	-22.80	0.674556213017752	10.5	3-8,1277-1272;9-10,1270-1269;12-20,1267-1259	1-2,1279-1278[UP5];x-x,1271-1271[BULt];11-11,1268-1268[SIL];21-21,1258-1258[UP3]	.(((((((((.((.((((((..&..))))))-)).))))))))).	AAUCGGGAGGCGCUCUGUUGCG&AUCAAUAG-GCAUUUCCCGAUA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s243_TRINITY_DN11711_c1_g1_1269_TPlot.pdf
TRINITY_DN11711_c1_g1:1270	si_s242	TRINITY_DN11711_c1_g1	1259	1280	1270	-33.40	-22.50	0.673652694610778	11	4-9,1277-1272;10-11,1270-1269;13-21,1267-1259	1-3,1280-1278[UP5];x-x,1271-1271[BULt];12-12,1268-1268[SIL]	(((((((((.((.((((((...&...))))))-)).)))))))))	AUCGGGAGGCGCUCUGUUGCGC&AAUCAAUAG-GCAUUUCCCGAU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s242_TRINITY_DN11711_c1_g1_1270_TPlot.pdf
TRINITY_DN11711_c1_g1:853	si_a141	TRINITY_DN11711_c1_g1	842	861	853	-23.80	-15.70	0.659663865546218	9.5	1-7,861-855;9-18,854-845	8-8,x-x[BULq];19-21,844-842[UP3]	...((((((((((-(((((((&))))))).))))))))))...	ACCGACGGCGGCG-UUGAUUA&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999999818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN11711_c1_g1_853_TPlot.pdf
TRINITY_DN11711_c1_g1:958	si_a191	TRINITY_DN11711_c1_g1	943	967	958	-32.00	-21.28	0.665	15.5	2-12,966-956;14-20,950-944	1-1,967-967[UP5];13-13,955-951[AILt];21-21,943-943[UP3]	.(((((((.....(((((((((((.&.)))))))))))----.))))))).	CAUUGGUGUCGCUGCGGGGGGAGAA&AUCUUUCCCUGU----UCACUAAUA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN11711_c1_g1_958_TPlot.pdf
TRINITY_DN11711_c1_g1:967	si_a552	TRINITY_DN11711_c1_g1	957	976	967	-33.10	-21.80	0.658610271903323	10.5	5-12,972-965;14-21,964-957	1-4,976-973[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	CGGGGGGA-GAAGAGAUCUCG&AUCUAUUUCUUUAUCUCCCCG	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN11711_c1_g1_967_TPlot.pdf
TRINITY_DN11716_c0_g1:220	si_a253	TRINITY_DN11716_c0_g1	211	228	220	-41.20	-27.80	0.674757281553398	6	1-5,228-224;7-11,223-219;14-20,218-212	6-6,x-x[BULq];12-13,x-x[BULq];21-21,211-211[UP3]	.(((((((--(((((-(((((&))))).)))))..))))))).	GUGCCCUC--UACAA-CGGGG&CCCCGAUUGUAUCGAGGGCAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN11716_c0_g1_220_TPlot.pdf
TRINITY_DN11716_c0_g1:259	si_s499	TRINITY_DN11716_c0_g1	248	268	259	-22.60	-15.00	0.663716814159292	6	1-15,268-254	16-21,253-248[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUGUUUGUUUUGUUUAUAU&AUAUAAACAAAACAAUUCUAU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN11716_c0_g1_259_TPlot.pdf
TRINITY_DN11716_c0_g1:260	si_s498	TRINITY_DN11716_c0_g1	249	269	260	-22.40	-15.90	0.709821428571429	5	1-16,269-254	17-21,253-249[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUGUUUGUUUUGUUUAUAUU&AAUAUAAACAAAACAAUUCUA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN11716_c0_g1_260_TPlot.pdf
TRINITY_DN11716_c0_g1:261	si_s497	TRINITY_DN11716_c0_g1	250	270	261	-22.00	-16.80	0.763636363636364	4	1-17,270-254	18-21,253-250[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUGUUUGUUUUGUUUAUAUUU&AAAUAUAAACAAAACAAUUCU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN11716_c0_g1_261_TPlot.pdf
TRINITY_DN11716_c0_g1:262	si_s496	TRINITY_DN11716_c0_g1	251	271	262	-21.70	-16.80	0.774193548387097	4	2-18,270-254	1-1,271-271[UP5];19-21,253-251[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UGUUUGUUUUGUUUAUAUUUC&UAAAUAUAAACAAAACAAUUC	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN11716_c0_g1_262_TPlot.pdf
TRINITY_DN11716_c0_g1:340	si_a587	TRINITY_DN11716_c0_g1	329	353	340	-30.80	-20.30	0.659090909090909	12	1-8,353-346;9-18,341-332	x-x,345-342[BULt];19-21,331-329[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	UUUUUCUGUCUUUUAUACUUGUUAC&GUAACAAG----AAGGACAGAAUUU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a587_TRINITY_DN11716_c0_g1_340_TPlot.pdf
TRINITY_DN11717_c0_g1:556	si_a599	TRINITY_DN11717_c0_g1	545	565	556	-30.40	-19.90	0.654605263157895	9.5	4-10,562-556;12-20,554-546	1-3,565-563[UP5];11-11,555-555[SIL];21-21,545-545[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AUGGAGUUGCCAGAAUUCACU&ACAGAAUUUUCGCAAUUCCAA	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN11717_c0_g1_556_TPlot.pdf
TRINITY_DN1171_c0_g1:2093	si_a328	TRINITY_DN1171_c0_g1	2081	2102	2093	-30.10	-20.10	0.667774086378738	9.5	3-11,2100-2092;12-20,2090-2082	1-2,2102-2101[UP5];x-x,2091-2091[BULt];21-21,2081-2081[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	UGGACGAGGAGAUGAAGGAAGC&GAUUUUUUUAU-UCCUUGUCCC	2	0.999735944309267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1171_c0_g1_2093_TPlot.pdf
TRINITY_DN1171_c0_g1:2408	si_s803	TRINITY_DN1171_c0_g1	2397	2419	2408	-26.00	-17.30	0.665384615384615	10.5	2-7,2418-2413;9-21,2409-2397	1-1,2419-2419[UP5];8-8,2412-2410[AILt]	(((((((((((((...((((((.&.))))))--.)))))))))))))	AGAAGGUAACGAAACUGUGGAAG&AUUUUAU--CUUCGUUACCUUUU	2	0.999999962578053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1171_c0_g1_2408_TPlot.pdf
TRINITY_DN1171_c0_g1:3680	si_a490	TRINITY_DN1171_c0_g1	3669	3688	3680	-28.10	-20.20	0.718861209964413	5	1-6,3688-3683;8-14,3682-3676;16-21,3674-3669	7-7,x-x[BULq];15-15,3675-3675[SIL]	((((((.(((((((-((((((&)))))).))))))).))))))	ACGAAGUGCGACGU-UUCUAU&AUAGAAUAUGUCGUUUUUCGU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN1171_c0_g1_3680_TPlot.pdf
TRINITY_DN1171_c0_g1:3681	si_a489	TRINITY_DN1171_c0_g1	3670	3689	3681	-27.70	-18.90	0.682310469314079	6	2-7,3688-3683;9-15,3682-3676;17-21,3674-3670	1-1,3689-3689[UP5];8-8,x-x[BULq];16-16,3675-3675[SIL]	(((((.(((((((-((((((.&.)))))).))))))).)))))	CGAAGUGCGACGU-UUCUAUU&UAUAGAAUAUGUCGUUUUUCG	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN1171_c0_g1_3681_TPlot.pdf
TRINITY_DN11720_c0_g1:590	si_a546	TRINITY_DN11720_c0_g1	577	599	590	-28.60	-18.98	0.663636363636364	10	1-6,599-594;9-16,591-584;19-21,579-577	7-8,593-592[SIL];17-18,583-580[AILt]	(((....((((((((..((((((&))))))..))))))))--..)))	GGUUACUAGAGAUAGUGUGAGCC&GGUUCAAUCUAUUUCU--UUAUC	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN11720_c0_g1_590_TPlot.pdf
TRINITY_DN11720_c0_g1:591	si_a545	TRINITY_DN11720_c0_g1	580	600	591	-28.10	-20.00	0.711743772241993	9.5	1-7,600-594;10-17,591-584	8-9,593-592[SIL];18-21,583-580[UP3]	....((((((((..(((((((&)))))))..))))))))....	UACUAGAGAUAGUGUGAGCCG&CGGUUCAAUCUAUUUCUUUAU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN11720_c0_g1_591_TPlot.pdf
TRINITY_DN11720_c0_g1:593	si_a543	TRINITY_DN11720_c0_g1	582	602	593	-28.70	-20.00	0.696864111498258	10.5	3-9,600-594;12-19,591-584	1-2,602-601[UP5];10-11,593-592[SIL];20-21,583-582[UP3]	..((((((((..(((((((..&..)))))))..))))))))..	CUAGAGAUAGUGUGAGCCGCU&AUCGGUUCAAUCUAUUUCUUU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN11720_c0_g1_593_TPlot.pdf
TRINITY_DN11720_c0_g1:594	si_a542	TRINITY_DN11720_c0_g1	583	603	594	-30.70	-20.00	0.651465798045603	11.5	4-10,600-594;13-20,591-584	1-3,603-601[UP5];11-12,593-592[SIL];21-21,583-583[UP3]	.((((((((..(((((((...&...)))))))..)))))))).	UAGAGAUAGUGUGAGCCGCUG&GAUCGGUUCAAUCUAUUUCUU	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN11720_c0_g1_594_TPlot.pdf
TRINITY_DN11726_c0_g1:306	si_a309	TRINITY_DN11726_c0_g1	295	315	306	-33.60	-25.30	0.75297619047619	5	2-12,314-304;14-21,302-295	1-1,315-315[UP5];13-13,303-303[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UUAUGGGUCGAUCUAAGCGAU&UUCGCUUGGAUUUAUCCAUGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN11726_c0_g1_306_TPlot.pdf
TRINITY_DN11726_c0_g1:308	si_a307	TRINITY_DN11726_c0_g1	297	317	308	-33.00	-22.90	0.693939393939394	5.5	1-2,317-316;4-14,314-304;16-21,302-297	3-3,315-315[SIL];15-15,303-303[SIL]	((((((.(((((((((((.((&)).))))))))))).))))))	AUGGGUCGAUCUAAGCGAUUU&GAUUCGCUUGGAUUUAUCCAU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN11726_c0_g1_308_TPlot.pdf
TRINITY_DN1172_c0_g1:738	si_a327	TRINITY_DN1172_c0_g1	727	747	738	-28.40	-21.70	0.764084507042254	7.5	3-9,745-739;11-21,737-727	1-2,747-746[UP5];10-10,738-738[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GGGCAAGGAAUUAGAAGAUAU&UGAUUUUUUUAUUCCUUGUCC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1172_c0_g1_738_TPlot.pdf
TRINITY_DN1172_c0_g1:842	si_a24	TRINITY_DN1172_c0_g1	831	851	842	-24.20	-17.90	0.739669421487603	7	1-17,851-835	18-21,834-831[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUGGUAGAACUGAAAGUGAAU&AUUUAUUUUUAGUUCUAAGAC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN1172_c0_g1_842_TPlot.pdf
TRINITY_DN1172_c0_g1:843	si_a23	TRINITY_DN1172_c0_g1	832	852	843	-22.80	-19.00	0.833333333333333	6	1-18,852-835	19-21,834-832[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGGUAGAACUGAAAGUGAAUA&UAUUUAUUUUUAGUUCUAAGA	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1172_c0_g1_843_TPlot.pdf
TRINITY_DN1172_c0_g1:847	si_a19	TRINITY_DN1172_c0_g1	836	857	847	-27.00	-20.30	0.751851851851852	7.5	3-4,855-854;5-21,852-836	1-2,857-856[UP5];x-x,853-853[BULt]	(((((((((((((((((.((..&..))-)))))))))))))))))	AGAACUGAAAGUGAAUAUGGGA&AGCC-UAUUUAUUUUUAGUUCU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1172_c0_g1_847_TPlot.pdf
TRINITY_DN1172_c0_g1:857	si_a187	TRINITY_DN1172_c0_g1	845	866	857	-32.00	-22.60	0.70625	9.5	5-13,862-854;14-21,852-845	1-4,866-863[UP5];x-x,853-853[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AGUGAAUAUGGGAAGGAUUUGG&UAAUAUCUUUCCC-UGUUCACU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN1172_c0_g1_857_TPlot.pdf
TRINITY_DN11731_c0_g1:883	si_a55	TRINITY_DN11731_c0_g1	872	891	883	-38.90	-27.20	0.699228791773779	7	3-7,889-885;9-21,884-872	1-2,891-890[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAGGAGGCGAGU-GACUUGC&AGGAGUCGACUCGCUUCUUUC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN11731_c0_g1_883_TPlot.pdf
TRINITY_DN1173_c0_g1:1030	si_s806	TRINITY_DN1173_c0_g1	1015	1039	1030	-28.60	-18.80	0.657342657342657	14.5	2-11,1038-1029;12-19,1024-1017	1-1,1039-1039[UP5];x-x,1028-1025[BULt];20-21,1016-1015[UP3]	..((((((((....((((((((((.&.))))))))))----))))))))..	AUGAGAAGGUUGCCAAUGAGGAUGC&UUAUCUUCGUU----ACCUUUUCUU	3	0.999999999999942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1173_c0_g1_1030_TPlot.pdf
TRINITY_DN1173_c0_g1:1031	si_s805	TRINITY_DN1173_c0_g1	1016	1040	1031	-28.60	-18.80	0.657342657342657	15.5	3-12,1038-1029;13-20,1024-1017	1-2,1040-1039[UP5];x-x,1028-1025[BULt];21-21,1016-1016[UP3]	.((((((((....((((((((((..&..))))))))))----)))))))).	UGAGAAGGUUGCCAAUGAGGAUGCA&UUUAUCUUCGUU----ACCUUUUCU	4	0.999999999998946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1173_c0_g1_1031_TPlot.pdf
TRINITY_DN1173_c0_g1:1302	si_s697	TRINITY_DN1173_c0_g1	1291	1311	1302	-26.90	-19.10	0.71003717472119	5.5	2-7,1310-1305;9-21,1303-1291	1-1,1311-1311[UP5];8-8,1304-1304[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UCGCUGAUGAAUCCAUUAAUA&AAUUAGUCGAUUUAUUAGUGA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN1173_c0_g1_1302_TPlot.pdf
TRINITY_DN1173_c0_g1:274	si_a690	TRINITY_DN1173_c0_g1	260	283	274	-35.90	-24.50	0.682451253481894	10.5	1-11,283-273;12-20,269-261	x-x,272-270[BULt];21-21,260-260[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	AACCGGUUGUUAGGUUCGGAAUUG&CGGUUUCGAAC---ACAACUGGUA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a690_TRINITY_DN1173_c0_g1_274_TPlot.pdf
TRINITY_DN1173_c0_g1:3048	si_a402	TRINITY_DN1173_c0_g1	3037	3057	3048	-22.40	-16.20	0.723214285714286	6	1-13,3057-3045;15-19,3043-3039	14-14,3044-3044[SIL];20-21,3038-3037[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	CUUGUGAUCAAGAUAAUUCUA&UAGAAUUGUUUUGUUUAUAUU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN1173_c0_g1_3048_TPlot.pdf
TRINITY_DN1173_c0_g1:3050	si_a400	TRINITY_DN1173_c0_g1	3039	3059	3050	-22.80	-16.10	0.706140350877193	7	3-15,3057-3045;17-21,3043-3039	1-2,3059-3058[UP5];16-16,3044-3044[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UGUGAUCAAGAUAAUUCUACA&UAUAGAAUUGUUUUGUUUAUA	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1173_c0_g1_3050_TPlot.pdf
TRINITY_DN1173_c0_g1:3051	si_a399	TRINITY_DN1173_c0_g1	3040	3060	3051	-22.60	-14.90	0.65929203539823	8.5	4-16,3057-3045;18-21,3043-3040	1-3,3060-3058[UP5];17-17,3044-3044[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GUGAUCAAGAUAAUUCUACAA&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999646151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1173_c0_g1_3051_TPlot.pdf
TRINITY_DN1173_c0_g1:3239	si_a144	TRINITY_DN1173_c0_g1	3228	3248	3239	-27.40	-21.10	0.77007299270073	6.5	3-16,3246-3233;18-21,3231-3228	1-2,3248-3247[UP5];17-17,3232-3232[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	CCUUUAGACAGCAAUGAUUCU&UUAAUCGUUGUUGUUUUAAGG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN1173_c0_g1_3239_TPlot.pdf
TRINITY_DN1173_c0_g1:3240	si_a143	TRINITY_DN1173_c0_g1	3229	3249	3240	-25.10	-17.40	0.693227091633466	8.5	4-17,3246-3233;19-21,3231-3229	1-3,3249-3247[UP5];18-18,3232-3232[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	CUUUAGACAGCAAUGAUUCUG&AUUAAUCGUUGUUGUUUUAAG	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN1173_c0_g1_3240_TPlot.pdf
TRINITY_DN1173_c0_g1:3241	si_a142	TRINITY_DN1173_c0_g1	3230	3250	3241	-23.50	-15.40	0.65531914893617	12	5-18,3246-3233	1-4,3250-3247[UP5];19-21,3232-3230[UP3]	...((((((((((((((....&....))))))))))))))...	UUUAGACAGCAAUGAUUCUGC&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999979148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1173_c0_g1_3241_TPlot.pdf
TRINITY_DN1173_c0_g1:3245	si_a138	TRINITY_DN1173_c0_g1	3234	3252	3245	-26.30	-17.40	0.661596958174905	8.5	1-5,3252-3248;9-21,3246-3234	6-8,3247-3247[AILq]	(((((((((((((.--(((((&)))))...)))))))))))))	GACAGCAAUGAUUC--UGCUA&UAGUAAUUAAUCGUUGUUGUU	2	0.987487715898913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN1173_c0_g1_3245_TPlot.pdf
TRINITY_DN1173_c0_g1:4508	si_a867	TRINITY_DN1173_c0_g1	4496	4517	4508	-24.10	-16.00	0.663900414937759	7	3-12,4515-4506;14-17,4504-4501;18-21,4499-4496	1-2,4517-4516[UP5];13-13,4505-4505[SIL];x-x,4500-4500[BULt]	((((.((((.((((((((((..&..)))))))))).))))-))))	GCAACCUGGUUCUUUAGUAAAC&AAUUAUUAAAGAUUUAG-UUGC	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN1173_c0_g1_4508_TPlot.pdf
TRINITY_DN1173_c0_g1:5063	si_a588	TRINITY_DN1173_c0_g1	5052	5071	5063	-29.00	-19.50	0.672413793103448	4	1-8,5071-5064;10-17,5063-5056;19-21,5054-5052	9-9,x-x[BULq];18-18,5055-5055[SIL]	(((.((((((((-((((((((&)))))))).)))))))).)))	AAAUUUCUGUUC-UCUUGUUA&UAACAAGAAGGACAGAAUUUU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN1173_c0_g1_5063_TPlot.pdf
TRINITY_DN11740_c1_g1:214	si_a351	TRINITY_DN11740_c1_g1	203	223	214	-20.50	-13.70	0.668292682926829	11	6-21,218-203	1-5,223-219[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUAAAAUGGGAUUAAGAAAG&AAAUAUUAAUUCUAUUUUGAU	4	0.999995553922631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN11740_c1_g1_214_TPlot.pdf
TRINITY_DN11740_c1_g1:2164	si_a765	TRINITY_DN11740_c1_g1	2153	2173	2164	-30.50	-22.20	0.727868852459016	7	1-9,2173-2165;11-19,2163-2155	10-10,2164-2164[SIL];20-21,2154-2153[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GAUGAAUCAGUGAAGAAUCCA&UGGGUUUUUGAUUGAUUCAAC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN11740_c1_g1_2164_TPlot.pdf
TRINITY_DN11740_c1_g1:2166	si_a763	TRINITY_DN11740_c1_g1	2155	2175	2166	-28.80	-23.30	0.809027777777778	5	1-11,2175-2165;13-21,2163-2155	12-12,2164-2164[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	UGAAUCAGUGAAGAAUCCAAG&UUUGGGUUUUUGAUUGAUUCA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN11740_c1_g1_2166_TPlot.pdf
TRINITY_DN11740_c1_g1:2169	si_a760	TRINITY_DN11740_c1_g1	2158	2178	2169	-31.10	-20.70	0.665594855305466	7.5	3-14,2176-2165;16-21,2163-2158	1-2,2178-2177[UP5];15-15,2164-2164[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AUCAGUGAAGAAUCCAAGGCA&UCCUUUGGGUUUUUGAUUGAU	3	0.99999988890655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN11740_c1_g1_2169_TPlot.pdf
TRINITY_DN11740_c1_g1:222	si_s606	TRINITY_DN11740_c1_g1	211	231	222	-28.20	-18.50	0.656028368794326	6.5	1-5,231-227;7-14,225-218;16-20,216-212	6-6,226-226[SIL];15-15,217-217[SIL];21-21,211-211[UP3]	.(((((.((((((((.(((((&))))).)))))))).))))).	GGGAUUAAGAAAGGACUUGCU&AGCGAAUCUUUUUUAAAUCCA	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN11740_c1_g1_222_TPlot.pdf
TRINITY_DN11740_c1_g1:2227	si_a789	TRINITY_DN11740_c1_g1	2216	2236	2227	-24.80	-16.70	0.673387096774194	11	5-18,2232-2219	1-4,2236-2233[UP5];19-21,2218-2216[UP3]	...((((((((((((((....&....))))))))))))))...	AGAGGAAAAUAGAGAAAGAAG&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999680214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN11740_c1_g1_2227_TPlot.pdf
TRINITY_DN11740_c1_g1:223	si_s605	TRINITY_DN11740_c1_g1	212	232	223	-27.50	-18.30	0.665454545454546	6.5	2-6,231-227;8-15,225-218;17-21,216-212	1-1,232-232[UP5];7-7,226-226[SIL];16-16,217-217[SIL]	(((((.((((((((.(((((.&.))))).)))))))).)))))	GGAUUAAGAAAGGACUUGCUA&AAGCGAAUCUUUUUUAAAUCC	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN11740_c1_g1_223_TPlot.pdf
TRINITY_DN11740_c1_g1:3139	si_a785	TRINITY_DN11740_c1_g1	3128	3147	3139	-25.90	-22.20	0.857142857142857	4	1-7,3147-3141;9-21,3140-3128	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	GAAGGUAGAAGAA-AGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN11740_c1_g1_3139_TPlot.pdf
TRINITY_DN11740_c1_g1:732	si_a472	TRINITY_DN11740_c1_g1	720	741	732	-21.50	-14.80	0.688372093023256	5	1-14,741-728;15-20,726-721	x-x,727-727[BULt];21-21,720-720[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	GAUAUAGCCGAUAAUUAUGUAU&AUAUGUAAUUAUUG-UUAUAUA	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN11740_c1_g1_732_TPlot.pdf
TRINITY_DN11740_c1_g1:733	si_a471	TRINITY_DN11740_c1_g1	721	742	733	-21.10	-14.60	0.691943127962085	5	2-15,741-728;16-21,726-721	1-1,742-742[UP5];x-x,727-727[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	AUAUAGCCGAUAAUUAUGUAUC&AAUAUGUAAUUAUUG-UUAUAU	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN11740_c1_g1_733_TPlot.pdf
TRINITY_DN11740_c1_g1:839	si_a70	TRINITY_DN11740_c1_g1	828	847	839	-23.90	-17.00	0.711297071129707	6	1-6,847-842;10-21,839-828	7-9,841-840[AILq]	((((((((((((..-((((((&))))))...))))))))))))	AAUGAAAAACAAAA-GAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999957295187837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN11740_c1_g1_839_TPlot.pdf
TRINITY_DN11740_c1_g1:840	si_a69	TRINITY_DN11740_c1_g1	829	848	840	-24.00	-16.40	0.683333333333333	7	2-7,847-842;11-21,839-829	1-1,848-848[UP5];8-10,841-840[AILq]	(((((((((((..-((((((.&.))))))...)))))))))))	AUGAAAAACAAAA-GAAAGAG&UUCUUUCAAAUUGUUUUUCAU	3	0.999999977095107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN11740_c1_g1_840_TPlot.pdf
TRINITY_DN11740_c1_g2:88	si_s396	TRINITY_DN11740_c1_g2	77	97	88	-32.90	-23.10	0.702127659574468	8	2-3,96-95;5-11,93-87;13-18,85-80	1-1,97-97[UP5];4-4,94-94[SIL];12-12,86-86[SIL];19-21,79-77[UP3]	...((((((.(((((((.((.&.)).))))))).))))))...	UGAUCGUCUCCCUUGGAUUGG&ACAUUCCAAGGAAGACGAAAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN11740_c1_g2_88_TPlot.pdf
TRINITY_DN11742_c0_g1:287	si_a343	TRINITY_DN11742_c0_g1	276	294	287	-28.80	-18.80	0.652777777777778	9	1-7,294-288;11-21,286-276	8-10,287-287[AILq]	(((((((((((.--(((((((&)))))))...)))))))))))	GGAAUUAGUAUA--UGGGGCA&UGUCCCGAAAAUAUUAAUUCU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN11742_c0_g1_287_TPlot.pdf
TRINITY_DN11742_c0_g1:4385	si_s352	TRINITY_DN11742_c0_g1	4374	4397	4385	-27.20	-17.80	0.654411764705882	8	1-4,4397-4394;5-21,4390-4374	x-x,4393-4391[BULt]	(((((((((((((((((...((((&))))---)))))))))))))))))	UUCGAUUUAUUUUUUUAUAAUCUC&GAGA---UAAAGAAAUAGAUUGAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN11742_c0_g1_4385_TPlot.pdf
TRINITY_DN11742_c0_g1:663	si_s69	TRINITY_DN11742_c0_g1	652	673	663	-23.40	-16.10	0.688034188034188	10	4-6,670-668;7-21,666-652	1-3,673-671[UP5];x-x,667-667[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	GAAAGAAAAGAGAUGUGAAUAA&AACUUC-UAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11742_c0_g1_663_TPlot.pdf
TRINITY_DN11743_c0_g1:13	si_s76	TRINITY_DN11743_c0_g1	1	22	13	-23.60	-21.60	0.915254237288136	7	1-14,22-9;15-21,7-1	x-x,8-8[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GAGAGAGAGAGAGAGAGAGGAU&AUUUUUUUUCUUUC-CUUUCUU	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11743_c0_g1_13_TPlot.pdf
TRINITY_DN11743_c0_g1:961	si_s79	TRINITY_DN11743_c0_g1	950	975	961	-26.20	-21.60	0.824427480916031	12.5	1-9,975-967;10-21,961-950	x-x,966-962[BULt]	((((((((((((.....(((((((((&)))))))))-----))))))))))))	GAGGAGAGAGGAUACGUAAGAGAAAA&UUUUUUCUU-----UCCUUUCUUCUU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11743_c0_g1_961_TPlot.pdf
TRINITY_DN11744_c0_g1:683	si_s196	TRINITY_DN11744_c0_g1	672	692	683	-29.30	-19.60	0.668941979522184	11	6-19,687-674;21-21,672-672	1-5,692-688[UP5];20-20,673-673[SIL]	(.((((((((((((((.....&.....)))))))))))))).)	AGUGGUACAUUCUAAAUGUGU&AUUAUUUUGGAAUGUACCAGU	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN11744_c0_g1_683_TPlot.pdf
TRINITY_DN11744_c0_g1:799	si_a77	TRINITY_DN11744_c0_g1	788	808	799	-22.20	-14.80	0.666666666666667	6.5	2-17,807-792	1-1,808-808[UP5];18-21,791-788[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAUAAAUGAUGAAAAAUAAUA&AAUUGUUUUUCAUUAUUAAGA	3	0.999999903584718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN11744_c0_g1_799_TPlot.pdf
TRINITY_DN11744_c0_g1:800	si_a76	TRINITY_DN11744_c0_g1	789	809	800	-21.20	-14.80	0.69811320754717	7.5	3-18,807-792	1-2,809-808[UP5];19-21,791-789[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUAAAUGAUGAAAAAUAAUAA&AAAUUGUUUUUCAUUAUUAAG	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN11744_c0_g1_800_TPlot.pdf
TRINITY_DN11744_c0_g1:801	si_a75	TRINITY_DN11744_c0_g1	790	810	801	-21.30	-14.80	0.694835680751174	8.5	4-19,807-792	1-3,810-808[UP5];20-21,791-790[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAAAUGAUGAAAAAUAAUAAA&CAAAUUGUUUUUCAUUAUUAA	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN11744_c0_g1_801_TPlot.pdf
TRINITY_DN11744_c0_g1:802	si_a74	TRINITY_DN11744_c0_g1	791	811	802	-22.20	-14.80	0.666666666666667	9.5	5-20,807-792	1-4,811-808[UP5];21-21,791-791[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAUGAUGAAAAAUAAUAAAA&UCAAAUUGUUUUUCAUUAUUA	3	0.999999997153094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN11744_c0_g1_802_TPlot.pdf
TRINITY_DN11744_c0_g1:803	si_a73	TRINITY_DN11744_c0_g1	792	812	803	-21.90	-14.50	0.662100456621005	10.5	6-21,807-792	1-5,812-808[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUGAUGAAAAAUAAUAAAAG&UUCAAAUUGUUUUUCAUUAUU	2	0.999999894860536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN11744_c0_g1_803_TPlot.pdf
TRINITY_DN11744_c1_g1:275	si_a300	TRINITY_DN11744_c1_g1	264	284	275	-28.20	-19.30	0.684397163120567	16.5	7-18,278-267	1-6,284-279[UP5];19-21,266-264[UP3]	...((((((((((((......&......))))))))))))...	AAACCGAGCGGGUCUACAGCU&UAAAAAAGAUUCGCUUGGAUU	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN11744_c1_g1_275_TPlot.pdf
TRINITY_DN11744_c1_g1:284	si_a276	TRINITY_DN11744_c1_g1	267	293	284	-37.90	-25.10	0.662269129287599	14	1-4,293-290;6-10,288-284;11-15,278-274;16-21,272-267	5-5,289-289[SIL];x-x,283-279[BULt];x-x,273-273[BULt]	((((((.(((((.....(((((.((((&)))).)))))-----)))))-))))))	CCGAGCGGGUCUACAGCUUUCGCAGGC&GCCUACGAAA-----AGAUC-GCUUGG	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN11744_c1_g1_284_TPlot.pdf
TRINITY_DN11744_c1_g1:365	si_a324	TRINITY_DN11744_c1_g1	354	373	365	-27.50	-19.70	0.716363636363636	6	1-5,373-369;7-13,368-362;15-21,360-354	6-6,x-x[BULq];14-14,361-361[SIL]	(((((((.(((((((-(((((&))))).))))))).)))))))	CAAGGAAAAAGAAAG-CGUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN11744_c1_g1_365_TPlot.pdf
TRINITY_DN11744_c1_g1:46	si_s803	TRINITY_DN11744_c1_g1	35	55	46	-26.00	-18.20	0.7	8	2-12,54-44;15-17,41-39	1-1,55-55[UP5];13-14,43-42[SIL];18-21,38-35[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	UGACGGUUUCGAAGAUGAAAA&AUUUUAUCUUCGUUACCUUUU	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN11744_c1_g1_46_TPlot.pdf
TRINITY_DN11752_c0_g1:2045	si_a840	TRINITY_DN11752_c0_g1	2032	2054	2045	-28.20	-19.00	0.673758865248227	10.5	5-16,2050-2039;17-21,2036-2032	1-4,2054-2051[UP5];x-x,2038-2037[BULt]	(((((..((((((((((((....&....))))))))))))--)))))	CAGGUGAUGGUAACUUCUAAGUC&AAAAUAGAAGUUGCUA--ACUUG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a840_TRINITY_DN11752_c0_g1_2045_TPlot.pdf
TRINITY_DN11759_c0_g1:14	si_a378	TRINITY_DN11759_c0_g1	3	23	14	-23.80	-17.50	0.735294117647059	4	2-15,22-9;18-21,6-3	1-1,23-23[UP5];16-17,8-7[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	UCUUUCUUCGAAAUUAUUUUG&AAAAAUGAUUUCGAAUUAAGA	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a378_TRINITY_DN11759_c0_g1_14_TPlot.pdf
TRINITY_DN11759_c0_g1:2331	si_s558	TRINITY_DN11759_c0_g1	2320	2340	2331	-28.20	-18.60	0.659574468085106	12.5	7-21,2334-2320	1-6,2340-2335[UP5]	(((((((((((((((......&......)))))))))))))))	UUGUUCCGAAGAUAUCUGAGA&GAAUUAAUAUUUUCGGGACAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN11759_c0_g1_2331_TPlot.pdf
TRINITY_DN11759_c0_g1:295	si_a498	TRINITY_DN11759_c0_g1	283	305	295	-33.50	-22.52	0.672238805970149	12	2-5,304-301;9-11,296-294;12-21,292-283	1-1,305-305[UP5];6-8,300-297[AILt];x-x,293-293[BULt]	((((((((((.(((....((((.&.))))-...)))-))))))))))	CGAGGAAGGCUGAAUGGUCGACG&UGUCG-UUUUUC-GUCUUCCUUG	4	0.999999999840997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN11759_c0_g1_295_TPlot.pdf
TRINITY_DN11759_c0_g1:481	si_s741	TRINITY_DN11759_c0_g1	470	490	481	-33.80	-22.40	0.662721893491124	8.5	1-15,490-476	16-21,475-470[UP3]	......(((((((((((((((&)))))))))))))))......	UGCUCAUCAGUCUGUUCACCU&GGGUGAAUAGAUUGACCUUAA	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN11759_c0_g1_481_TPlot.pdf
TRINITY_DN11759_c0_g1:485	si_s737	TRINITY_DN11759_c0_g1	474	494	485	-37.60	-24.90	0.662234042553191	9.5	4-19,491-476	1-3,494-492[UP5];20-21,475-474[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAUCAGUCUGUUCACCUGCCG&AGACGGGUGAAUAGAUUGACC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s737_TRINITY_DN11759_c0_g1_485_TPlot.pdf
TRINITY_DN11759_c0_g1:599	si_a100	TRINITY_DN11759_c0_g1	589	608	599	-29.70	-20.10	0.676767676767677	8	2-8,607-601;11-16,598-593;18-21,592-589	1-1,608-608[UP5];9-10,600-599[SIL];17-17,x-x[BULq]	((((-((((((..(((((((.&.)))))))..)))))).))))	CGUG-UUUGUCAGCGUUGCCG&AGGUAACGAAGAUAAAAUACG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a100_TRINITY_DN11759_c0_g1_599_TPlot.pdf
TRINITY_DN11759_c0_g1:6597	si_a634	TRINITY_DN11759_c0_g1	6586	6606	6597	-26.40	-18.00	0.681818181818182	9	1-6,6606-6601;9-19,6598-6588	7-8,6600-6599[SIL];20-21,6587-6586[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	CAGCUCAAAGAAGCAGACAUG&UAUGUCGAUUUUUUUGAGUAA	4	0.999998657188711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN11759_c0_g1_6597_TPlot.pdf
TRINITY_DN11759_c0_g1:798	si_a753	TRINITY_DN11759_c0_g1	779	807	798	-33.10	-21.60	0.652567975830816	12.5	2-13,806-795;14-16,786-784;19-21,781-779	1-1,807-807[UP5];x-x,794-787[BULt];17-18,783-782[SIL]	(((..(((........((((((((((((.&.))))))))))))--------)))..)))	GAAUUCCCUCUUCCGGAAGGGAGGUUCAA&AUGAACCUCCUUU--------GGGUUUUU	4	0.999999920598482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN11759_c0_g1_798_TPlot.pdf
TRINITY_DN11759_c0_g1:885	si_a637	TRINITY_DN11759_c0_g1	874	894	885	-25.80	-16.80	0.651162790697674	10.5	1-11,894-884;13-16,882-879	12-12,883-883[SIL];17-21,878-874[UP3]	.....((((.(((((((((((&))))))))))).)))).....	CUGCCGCUCCAAAAGGUCGGC&GUCGAUUUUUUUGAGUAAUAU	2	0.999999927621939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN11759_c0_g1_885_TPlot.pdf
TRINITY_DN1175_c0_g1:1350	si_a784	TRINITY_DN1175_c0_g1	1339	1360	1350	-24.70	-16.12	0.652631578947368	10	2-8,1359-1353;12-21,1348-1339	1-1,1360-1360[UP5];9-11,1352-1349[AILt]	((((((((((....(((((((.&.)))))))-...))))))))))	AAGAUGGAAACUGAAGAAGAGC&ACUCUUCU-AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1175_c0_g1_1350_TPlot.pdf
TRINITY_DN1175_c0_g1:1406	si_s69	TRINITY_DN1175_c0_g1	1395	1415	1406	-23.40	-15.30	0.653846153846154	7	3-7,1413-1409;9-20,1407-1396	1-2,1415-1414[UP5];8-8,1408-1408[SIL];21-21,1395-1395[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UAAAGAAAAAGAAAAGAAGCG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1175_c0_g1_1406_TPlot.pdf
TRINITY_DN1175_c0_g1:1407	si_s68	TRINITY_DN1175_c0_g1	1396	1416	1407	-23.10	-16.00	0.692640692640693	7	1-1,1416-1416;4-8,1413-1409;10-21,1407-1396	2-3,1415-1414[SIL];9-9,1408-1408[SIL]	((((((((((((.(((((..(&)..))))).))))))))))))	AAAGAAAAAGAAAAGAAGCGG&CAACUUCUAUUUUUUUUCUUU	4	0.999999999999849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1175_c0_g1_1407_TPlot.pdf
TRINITY_DN1175_c0_g1:1510	si_a325	TRINITY_DN1175_c0_g1	1499	1519	1510	-25.90	-19.50	0.752895752895753	7	1-3,1519-1517;5-12,1515-1508;14-21,1506-1499	4-4,1516-1516[SIL];13-13,1507-1507[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	ACGAGGAGAAAGAAGAUGGUG&CAUGAUUUUUUUAUUCCUUGU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN1175_c0_g1_1510_TPlot.pdf
TRINITY_DN1175_c0_g1:1511	si_a324	TRINITY_DN1175_c0_g1	1500	1520	1511	-27.50	-18.60	0.676363636363636	8	2-4,1519-1517;6-13,1515-1508;15-21,1506-1500	1-1,1520-1520[UP5];5-5,1516-1516[SIL];14-14,1507-1507[SIL]	(((((((.((((((((.(((.&.))).)))))))).)))))))	CGAGGAGAAAGAAGAUGGUGA&CCAUGAUUUUUUUAUUCCUUG	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN1175_c0_g1_1511_TPlot.pdf
TRINITY_DN1175_c0_g1:1514	si_s68	TRINITY_DN1175_c0_g1	1503	1524	1514	-23.10	-15.70	0.67965367965368	10.5	1-1,1524-1524;4-6,1521-1519;7-21,1517-1503	2-3,1523-1522[SIL];x-x,1518-1518[BULt]	(((((((((((((((.(((..(&)..)))-)))))))))))))))	GGAGAAAGAAGAUGGUGAGGAG&CAACUU-CUAUUUUUUUUCUUU	2	0.999999999936874	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1175_c0_g1_1514_TPlot.pdf
TRINITY_DN1175_c0_g1:1518	si_s808	TRINITY_DN1175_c0_g1	1506	1527	1518	-28.60	-21.00	0.734265734265734	8.5	1-6,1527-1522;8-12,1520-1516;13-19,1514-1508	7-7,1521-1521[SIL];x-x,1515-1515[BULt];20-21,1507-1506[UP3]	..(((((((.(((((.((((((&)))))).)))))-)))))))..	GAAAGAAGAUGGUGAGGAGGAU&AUCUUCGUUACC-UUUUCUUAA	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1175_c0_g1_1518_TPlot.pdf
TRINITY_DN1175_c0_g1:2276	si_s800	TRINITY_DN1175_c0_g1	2265	2285	2276	-29.70	-20.50	0.69023569023569	8	2-17,2284-2269	1-1,2285-2285[UP5];18-21,2268-2265[UP3]	....((((((((((((((((.&.))))))))))))))))....	CCCCAACGAAGAUGAGAUGCC&CGUAUUUUAUCUUCGUUACCU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN1175_c0_g1_2276_TPlot.pdf
TRINITY_DN1175_c0_g1:693	si_s77	TRINITY_DN1175_c0_g1	673	702	693	-25.50	-16.70	0.654901960784314	17	4-16,699-687;17-21,677-673	1-3,702-700[UP5];x-x,686-678[BULt]	(((((.........(((((((((((((...&...)))))))))))))---------)))))	GAGGAGUCUGUCAGGAGGAAAGAGGAACAA&UUUUUUUUCUUUCCUU---------UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1175_c0_g1_693_TPlot.pdf
TRINITY_DN1175_c0_g1:698	si_s72	TRINITY_DN1175_c0_g1	687	708	698	-24.10	-18.40	0.763485477178423	8.5	3-8,706-701;9-21,699-687	1-2,708-707[UP5];x-x,700-700[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	GAGGAAAGAGGAACAAAUGGCA&UUCUAUUU-UUUUUCUUUCCUU	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1175_c0_g1_698_TPlot.pdf
TRINITY_DN11761_c0_g1:2334	si_s305	TRINITY_DN11761_c0_g1	2323	2344	2334	-30.30	-19.80	0.653465346534653	15.5	3-7,2342-2338;12-21,2332-2323	1-2,2344-2343[UP5];8-11,2337-2333[AILt]	((((((((((.....(((((..&..)))))-....))))))))))	AGGGACAGAGAAAAGCGCGAGA&AAUUGCG-AAAAUUCUGUCCUU	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN11761_c0_g1_2334_TPlot.pdf
TRINITY_DN11765_c0_g1:1114	si_a824	TRINITY_DN11765_c0_g1	1103	1123	1114	-23.60	-15.40	0.652542372881356	7	2-17,1122-1107	1-1,1123-1123[UP5];18-21,1106-1103[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUGUUUUUCUUUCUUUUUUA&AAGAAAGGAAAGAAAAAAAAU	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN11765_c0_g1_1114_TPlot.pdf
TRINITY_DN11765_c0_g1:528	si_s47	TRINITY_DN11765_c0_g1	512	537	528	-26.30	-19.10	0.726235741444867	12.5	1-12,537-526;13-14,521-520;15-21,518-512	x-x,525-522[BULt];x-x,519-519[BULt]	(((((((.((....((((((((((((&))))))))))))----))-)))))))	CUGACUUAGAAAUUGAUCCGAUUGUU&AAUAAUUGGAUU----UC-AAGUUAG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN11765_c0_g1_528_TPlot.pdf
TRINITY_DN11765_c0_g1:715	si_s68	TRINITY_DN11765_c0_g1	696	724	715	-23.10	-15.40	0.666666666666667	18.5	1-11,724-714;12-19,705-698	x-x,713-706[BULt];20-21,697-696[UP3]	..((((((((........(((((((((((&)))))))))))--------))))))))..	AUGGAAAAAAGGUAUUCCAAUAGAAGUUG&CAACUUCUAUU--------UUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11765_c0_g1_715_TPlot.pdf
TRINITY_DN11766_c0_g1:464	si_a128	TRINITY_DN11766_c0_g1	453	473	464	-23.20	-17.30	0.745689655172414	4.5	2-19,472-455	1-1,473-473[UP5];20-21,454-453[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACUAAUUAUUAUUGUUAUAAU&UUUAUAGCAAUAGUAAUUAAU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN11766_c0_g1_464_TPlot.pdf
TRINITY_DN11778_c0_g1:571	si_a474	TRINITY_DN11778_c0_g1	560	581	571	-23.60	-15.90	0.673728813559322	10	1-7,581-575;9-20,572-561	8-8,574-573[AILt];21-21,560-560[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	ACUAUGUGACAGUUUGUUAUGU&AUGUAAU-UAUUGUUAUAUAGA	2	0.946990870446739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN11778_c0_g1_571_TPlot.pdf
TRINITY_DN1177_c0_g1:1007	si_s666	TRINITY_DN1177_c0_g1	996	1016	1007	-31.30	-20.70	0.661341853035144	7.5	1-3,1016-1014;6-7,1012-1011;8-20,1009-997	4-5,1013-1013[AILq];x-x,1010-1010[BULt];21-21,996-996[UP3]	.(((((((((((((.((.-(((&)))..))-))))))))))))).	CUCUGUAAUCAAUUACGC-CCC&GGGAUCG-AAUUGAUUAUAGAA	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN1177_c0_g1_1007_TPlot.pdf
TRINITY_DN1177_c0_g1:1008	si_s665	TRINITY_DN1177_c0_g1	997	1016	1008	-33.60	-23.42	0.697023809523809	8.5	1-4,1016-1013;9-21,1009-997	5-8,1012-1010[AILq]	(((((((((((((...-((((&))))....)))))))))))))	UCUGUAAUCAAUUACG-CCCC&GGGGAUCGAAUUGAUUAUAGA	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN1177_c0_g1_1008_TPlot.pdf
TRINITY_DN1177_c0_g1:1137	si_a788	TRINITY_DN1177_c0_g1	1124	1146	1137	-24.80	-18.16	0.732258064516129	10	1-12,1146-1135;16-21,1129-1124	13-15,1134-1130[AILt]	((((((.....((((((((((((&))))))))))))--...))))))	UUGGAAUUUGGAGAGGAGUAGAA&UUCUAUUUUUCU--AUUUUCCAA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1177_c0_g1_1137_TPlot.pdf
TRINITY_DN1177_c0_g1:1138	si_a787	TRINITY_DN1177_c0_g1	1125	1147	1138	-26.30	-17.46	0.663878326996198	9	2-13,1146-1135;17-21,1129-1125	1-1,1147-1147[UP5];14-16,1134-1130[AILt]	(((((.....((((((((((((.&.))))))))))))--...)))))	UGGAAUUUGGAGAGGAGUAGAAU&CUUCUAUUUUUCU--AUUUUCCA	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1177_c0_g1_1138_TPlot.pdf
TRINITY_DN1177_c0_g1:1142	si_s72	TRINITY_DN1177_c0_g1	1131	1152	1142	-24.10	-15.70	0.651452282157676	9	1-3,1152-1150;4-9,1148-1143;11-19,1141-1133	x-x,1149-1149[BULt];10-10,1142-1142[SIL];20-21,1132-1131[UP3]	..(((((((((.((((((.(((&)))-)))))).)))))))))..	UUGGAGAGGAGUAGAAUAUGAA&UUC-UAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1177_c0_g1_1142_TPlot.pdf
TRINITY_DN1177_c0_g1:1530	si_s76	TRINITY_DN1177_c0_g1	1519	1539	1530	-23.60	-16.00	0.677966101694915	11.5	5-15,1535-1525;17-20,1523-1520	1-4,1539-1536[UP5];16-16,1524-1524[SIL];21-21,1519-1519[UP3]	.((((.(((((((((((....&....))))))))))).)))).	UGGAAUGGAAAGAAGGACUGG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1177_c0_g1_1530_TPlot.pdf
TRINITY_DN1177_c0_g1:1531	si_s75	TRINITY_DN1177_c0_g1	1520	1540	1531	-24.00	-16.00	0.666666666666667	12.5	6-16,1535-1525;18-21,1523-1520	1-5,1540-1536[UP5];17-17,1524-1524[SIL]	((((.(((((((((((.....&.....))))))))))).))))	GGAAUGGAAAGAAGGACUGGA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1177_c0_g1_1531_TPlot.pdf
TRINITY_DN11782_c0_g1:672	si_s201	TRINITY_DN11782_c0_g1	662	682	672	-33.60	-22.90	0.681547619047619	6.5	1-6,682-677;8-17,674-665;19-21,664-662	7-7,676-675[AILt];18-18,x-x[BULq]	(((-((((((((((..((((((&))))))-.)))))))))).)))	ACG-AACUGGUGCAGCUCCAAA&UUUGGA-AUGUACCAGUUGUGU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN11782_c0_g1_672_TPlot.pdf
TRINITY_DN11782_c0_g1:679	si_s195	TRINITY_DN11782_c0_g1	667	688	679	-30.50	-20.50	0.672131147540984	12.5	6-12,683-677;14-21,674-667	1-5,688-684[UP5];13-13,676-675[AILt]	((((((((..(((((((.....&.....)))))))-.))))))))	CUGGUGCAGCUCCAAAAGAUAA&GAUUAUUUUGGA-AUGUACCAG	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s195_TRINITY_DN11782_c0_g1_679_TPlot.pdf
TRINITY_DN11787_c0_g1:3826	si_a764	TRINITY_DN11787_c0_g1	3816	3835	3826	-28.90	-18.80	0.650519031141869	5	1-14,3835-3822;17-21,3820-3816	15-16,3821-3821[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UUGAAA-AAUCGAAAAUCCGA&UUGGGUUUUUGAUUGAUUCAA	3	0.999999999829269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN11787_c0_g1_3826_TPlot.pdf
TRINITY_DN11787_c0_g1:4089	si_s423	TRINITY_DN11787_c0_g1	4078	4098	4089	-21.50	-15.30	0.711627906976744	7	1-6,4098-4093;9-20,4090-4079	7-8,4092-4091[SIL];21-21,4078-4078[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	AAGUUAUUGUUAUUAAGAGUG&UAUUCUAUAUAACAAUAAUUA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN11787_c0_g1_4089_TPlot.pdf
TRINITY_DN11787_c0_g1:4127	si_s431	TRINITY_DN11787_c0_g1	4116	4136	4127	-21.10	-15.70	0.744075829383886	6	1-12,4136-4125;14-19,4123-4118	13-13,4124-4124[SIL];20-21,4117-4116[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AAAAUAUGCGGUUAUUGUUGU&AUAACAAUAAUUACAUAUUAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN11787_c0_g1_4127_TPlot.pdf
TRINITY_DN11787_c0_g1:4128	si_s430	TRINITY_DN11787_c0_g1	4117	4137	4128	-21.30	-16.50	0.774647887323944	5	1-13,4137-4125;15-20,4123-4118	14-14,4124-4124[SIL];21-21,4117-4117[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AAAUAUGCGGUUAUUGUUGUG&UAUAACAAUAAUUACAUAUUA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN11787_c0_g1_4128_TPlot.pdf
TRINITY_DN11787_c0_g1:4129	si_s429	TRINITY_DN11787_c0_g1	4118	4138	4129	-21.10	-16.20	0.767772511848341	5	2-14,4137-4125;16-21,4123-4118	1-1,4138-4138[UP5];15-15,4124-4124[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAUAUGCGGUUAUUGUUGUGG&AUAUAACAAUAAUUACAUAUU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN11787_c0_g1_4129_TPlot.pdf
TRINITY_DN1178_c0_g1:910	si_a547	TRINITY_DN1178_c0_g1	896	920	910	-26.90	-18.00	0.669144981412639	12	1-8,920-913;9-10,911-910;11-21,906-896	x-x,912-912[BULt];x-x,909-907[BULt]	(((((((((((...((.((((((((&))))))))-))---)))))))))))	GGGUAGAGGGACUCUGCGAUUGAAC&GUUCAAUC-UA---UUUCUUUAUCU	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN1178_c0_g1_910_TPlot.pdf
TRINITY_DN1178_c0_g1:955	si_a236	TRINITY_DN1178_c0_g1	944	964	955	-35.00	-23.80	0.68	6	1-4,964-961;6-12,959-953;14-20,951-945	5-5,960-960[SIL];13-13,952-952[SIL];21-21,944-944[UP3]	.(((((((.(((((((.((((&)))).))))))).))))))).	CGGGGAUCAAAUUGGUAGUAG&CUAUAAUCAAUUCGAUCCCCC	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN1178_c0_g1_955_TPlot.pdf
TRINITY_DN1178_c0_g1:956	si_a235	TRINITY_DN1178_c0_g1	945	965	956	-33.60	-24.00	0.714285714285714	5.5	1-5,965-961;7-13,959-953;15-21,951-945	6-6,960-960[SIL];14-14,952-952[SIL]	(((((((.(((((((.(((((&))))).))))))).)))))))	GGGGAUCAAAUUGGUAGUAGG&UCUAUAAUCAAUUCGAUCCCC	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a235_TRINITY_DN1178_c0_g1_956_TPlot.pdf
TRINITY_DN1178_c0_g1:991	si_a326	TRINITY_DN1178_c0_g1	980	1000	991	-26.20	-18.90	0.721374045801527	9.5	1-9,1000-992;12-17,989-984;19-21,982-980	10-11,991-990[SIL];18-18,983-983[SIL]	(((.((((((..(((((((((&)))))))))..)))))).)))	GGCUGGGAGUUUGAGAGUCAU&AUGAUUUUUUUAUUCCUUGUC	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1178_c0_g1_991_TPlot.pdf
TRINITY_DN11790_c0_g1:280	si_s186	TRINITY_DN11790_c0_g1	271	289	280	-31.90	-21.20	0.664576802507837	5.5	1-10,289-280;12-16,278-274;19-20,273-272	11-11,279-279[SIL];17-18,x-x[BULq];21-21,271-271[UP3]	.((--(((((.((((((((((&)))))))))).)))))..)).	GCC--GAUAACCGUUACUCGG&CCGAGUAACGAUUAUUUUGGA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN11790_c0_g1_280_TPlot.pdf
TRINITY_DN11790_c0_g1:285	si_s181	TRINITY_DN11790_c0_g1	274	294	285	-34.60	-26.00	0.751445086705202	5	1-3,294-292;5-15,290-280;17-21,278-274	4-4,291-291[SIL];16-16,279-279[SIL]	(((((.(((((((((((.(((&))).))))))))))).)))))	GAUAACCGUUACUCGGGGGUU&GAUGCCCGAGUAACGAUUAUU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN11790_c0_g1_285_TPlot.pdf
TRINITY_DN11792_c0_g2:1763	si_s79	TRINITY_DN11792_c0_g2	1751	1772	1763	-26.20	-17.70	0.675572519083969	11.5	5-15,1768-1758;16-20,1756-1752	1-4,1772-1769[UP5];x-x,1757-1757[BULt];21-21,1751-1751[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	UAGGAGUAAAGGGGAGAAUACU&UUUUUUCUUUCCUUU-CUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11792_c0_g2_1763_TPlot.pdf
TRINITY_DN11793_c1_g1:625	si_s310	TRINITY_DN11793_c1_g1	611	634	625	-32.10	-22.00	0.685358255451713	6.5	1-5,634-630;7-14,628-621;15-21,617-611	6-6,629-629[SIL];x-x,620-618[BULt]	(((((((...((((((((.(((((&))))).))))))))---)))))))	GCAAGAAUGUGGAUAGAAGUUUCG&CGAAAAUUCUGUCC---UUCUUGU	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN11793_c1_g1_625_TPlot.pdf
TRINITY_DN11794_c0_g1:1086	si_a784	TRINITY_DN11794_c0_g1	1075	1104	1086	-24.70	-16.10	0.651821862348178	21.5	2-8,1103-1097;9-20,1087-1076	1-1,1104-1104[UP5];x-x,1096-1088[BULt];21-21,1075-1075[UP3]	.((((((((((((.........(((((((.&.)))))))---------)))))))))))).	CAGAUAGAAGAAUCUAUAUAGGAGAAGAGA&ACUCUUCU---------AUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11794_c0_g1_1086_TPlot.pdf
TRINITY_DN11794_c0_g1:1087	si_a783	TRINITY_DN11794_c0_g1	1076	1105	1087	-24.70	-16.10	0.651821862348178	22	3-9,1103-1097;10-21,1087-1076	1-2,1105-1104[UP5];x-x,1096-1088[BULt]	((((((((((((.........(((((((..&..)))))))---------))))))))))))	AGAUAGAAGAAUCUAUAUAGGAGAAGAGAA&AACUCUUCU---------AUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN11794_c0_g1_1087_TPlot.pdf
TRINITY_DN11794_c0_g1:695	si_a94	TRINITY_DN11794_c0_g1	684	704	695	-28.60	-20.50	0.716783216783217	8	3-17,702-688	1-2,704-703[UP5];18-21,687-684[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAUGCUUCGUUAUCUUUUCCU&AAGAAAAGGUAACGAAGAUAA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN11794_c0_g1_695_TPlot.pdf
TRINITY_DN11794_c0_g1:700	si_a89	TRINITY_DN11794_c0_g1	689	709	700	-26.40	-17.30	0.65530303030303	13.5	8-21,702-689	1-7,709-703[UP5]	((((((((((((((.......&.......))))))))))))))	UUCGUUAUCUUUUCCUUCAGG&UUAUUAAGAAAAGGUAACGAA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN11794_c0_g1_700_TPlot.pdf
TRINITY_DN11798_c0_g1:1375	si_a559	TRINITY_DN11798_c0_g1	1363	1384	1375	-36.80	-28.00	0.760869565217391	4	1-12,1384-1373;13-15,1371-1369;17-21,1367-1363	x-x,1372-1372[BULt];16-16,1368-1368[SIL]	(((((.(((.((((((((((((&))))))))))))-))).)))))	CGGUUAGCGAGGGAGAUAAAGA&UCUUUAUCUCCC-CGUGAAUCG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN11798_c0_g1_1375_TPlot.pdf
TRINITY_DN11798_c0_g1:2687	si_s76	TRINITY_DN11798_c0_g1	2675	2696	2687	-23.60	-15.70	0.665254237288135	8.5	2-6,2695-2691;8-12,2689-2685;13-20,2683-2676	1-1,2696-2696[UP5];7-7,2690-2690[SIL];x-x,2684-2684[BULt];21-21,2675-2675[UP3]	.((((((((.(((((.(((((.&.))))).)))))-)))))))).	UGGAAAGGACAAGAACGAAGAC&AUUUUUUUUCUU-UCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11798_c0_g1_2687_TPlot.pdf
TRINITY_DN11798_c0_g1:2688	si_s75	TRINITY_DN11798_c0_g1	2676	2697	2688	-24.00	-15.70	0.654166666666667	8.5	3-7,2695-2691;9-13,2689-2685;14-21,2683-2676	1-2,2697-2696[UP5];8-8,2690-2690[SIL];x-x,2684-2684[BULt]	((((((((.(((((.(((((..&..))))).)))))-))))))))	GGAAAGGACAAGAACGAAGACG&UAUUUUUUUUCUU-UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11798_c0_g1_2688_TPlot.pdf
TRINITY_DN11798_c0_g1:2780	si_s72	TRINITY_DN11798_c0_g1	2769	2789	2780	-24.10	-16.10	0.66804979253112	8	2-5,2788-2785;7-18,2783-2772	1-1,2789-2789[UP5];6-6,2784-2784[SIL];19-21,2771-2769[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UUCGAAAGAGAAGAAUUAGAC&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11798_c0_g1_2780_TPlot.pdf
TRINITY_DN11798_c0_g1:2783	si_s69	TRINITY_DN11798_c0_g1	2772	2792	2783	-23.40	-16.10	0.688034188034188	10.5	5-8,2788-2785;10-21,2783-2772	1-4,2792-2789[UP5];9-9,2784-2784[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAAAGAGAAGAAUUAGACUUU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11798_c0_g1_2783_TPlot.pdf
TRINITY_DN11798_c0_g1:5754	si_a403	TRINITY_DN11798_c0_g1	5743	5763	5754	-22.00	-17.40	0.790909090909091	6.5	2-4,5762-5760;6-21,5758-5743	1-1,5763-5763[UP5];5-5,5759-5759[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GAAUAUAAACGAGAUAUUUCG&AGAAUUGUUUUGUUUAUAUUU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11798_c0_g1_5754_TPlot.pdf
TRINITY_DN11798_c0_g1:784	si_a119	TRINITY_DN11798_c0_g1	773	792	784	-30.30	-20.60	0.67986798679868	11.5	1-7,792-786;10-17,784-777	8-9,785-785[AILq];18-21,776-773[UP3]	....((((((((.-(((((((&)))))))..))))))))....	AUCGGCUGUGAGG-GAGCUCG&CGAGCUUGUUUUAUAGCAAUA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN11798_c0_g1_784_TPlot.pdf
TRINITY_DN11798_c0_g1:786	si_a116	TRINITY_DN11798_c0_g1	776	795	786	-31.10	-20.80	0.668810289389068	12.5	4-10,792-786;13-20,784-777	1-3,795-793[UP5];11-12,785-785[AILq];21-21,776-776[UP3]	.((((((((.-(((((((...&...)))))))..)))))))).	GGCUGUGAGG-GAGCUCGGCG&AUACGAGCUUGUUUUAUAGCA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN11798_c0_g1_786_TPlot.pdf
TRINITY_DN11798_c0_g1:787	si_a115	TRINITY_DN11798_c0_g1	777	796	787	-30.40	-20.40	0.671052631578947	12.5	5-11,792-786;14-21,784-777	1-4,796-793[UP5];12-13,785-785[AILq]	((((((((.-(((((((....&....)))))))..))))))))	GCUGUGAGG-GAGCUCGGCGA&AAUACGAGCUUGUUUUAUAGC	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN11798_c0_g1_787_TPlot.pdf
TRINITY_DN11798_c0_g2:2258	si_a143	TRINITY_DN11798_c0_g2	2247	2267	2258	-25.10	-18.30	0.729083665338645	10.5	5-18,2263-2250	1-4,2267-2264[UP5];19-21,2249-2247[UP3]	...((((((((((((((....&....))))))))))))))...	GGGGAAACAACAACGAUCAUA&AUUAAUCGUUGUUGUUUUAAG	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN11798_c0_g2_2258_TPlot.pdf
TRINITY_DN11798_c0_g2:2737	si_s82	TRINITY_DN11798_c0_g2	2727	2745	2737	-28.90	-20.40	0.705882352941176	4.5	1-6,2745-2740;8-11,2739-2736;13-21,2735-2727	7-7,x-x[BULq];12-12,x-x[BULq]	(((((((((-((((-((((((&)))))).)))).)))))))))	AAGAAGAAG-AAGG-AAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11798_c0_g2_2737_TPlot.pdf
TRINITY_DN117_c0_g1:1491	si_s439	TRINITY_DN117_c0_g1	1480	1501	1491	-21.50	-14.00	0.651162790697674	8.5	2-6,1500-1496;7-13,1494-1488;15-21,1486-1480	1-1,1501-1501[UP5];x-x,1495-1495[BULt];14-14,1487-1487[SIL]	(((((((.(((((((.(((((.&.)))))-))))))).)))))))	UGUUGUACAUGGUGUGGUGAUG&AAUUAC-AUAUUAUAUAUAACA	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN117_c0_g1_1491_TPlot.pdf
TRINITY_DN117_c0_g1:2625	si_s112	TRINITY_DN117_c0_g1	2611	2634	2625	-24.80	-17.60	0.709677419354839	9	1-10,2634-2625;11-19,2621-2613	x-x,2624-2622[BULt];20-21,2612-2611[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	AGCUAUUUUUCGUGUAUUUUCCGA&UUGGAAAAUA---GAAAAAUAGAA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s112_TRINITY_DN117_c0_g1_2625_TPlot.pdf
TRINITY_DN117_c0_g1:2626	si_s111	TRINITY_DN117_c0_g1	2612	2635	2626	-24.80	-18.60	0.75	8	1-11,2635-2625;12-20,2621-2613	x-x,2624-2622[BULt];21-21,2612-2612[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	GCUAUUUUUCGUGUAUUUUCCGAU&AUUGGAAAAUA---GAAAAAUAGA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN117_c0_g1_2626_TPlot.pdf
TRINITY_DN117_c0_g1:2627	si_s110	TRINITY_DN117_c0_g1	2613	2636	2627	-25.80	-19.70	0.763565891472868	7.5	1-12,2636-2625;13-21,2621-2613	x-x,2624-2622[BULt]	(((((((((...((((((((((((&))))))))))))---)))))))))	CUAUUUUUCGUGUAUUUUCCGAUU&GAUUGGAAAAUA---GAAAAAUAG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s110_TRINITY_DN117_c0_g1_2627_TPlot.pdf
TRINITY_DN11800_c0_g1:25	si_a489	TRINITY_DN11800_c0_g1	14	40	25	-27.70	-19.10	0.689530685920578	15	1-9,40-32;10-20,25-15	x-x,31-26[BULt];21-21,14-14[UP3]	.(((((((((((......(((((((((&)))))))))------))))))))))).	AGAAGAAUGACAUUAACCUAUUCUGUA&UAUAGAAUA------UGUCGUUUUUCG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN11800_c0_g1_25_TPlot.pdf
TRINITY_DN11800_c0_g1:533	si_s69	TRINITY_DN11800_c0_g1	521	543	533	-23.40	-15.90	0.67948717948718	9.5	3-5,541-539;6-16,537-527;17-21,525-521	1-2,543-542[UP5];x-x,538-538[BULt];x-x,526-526[BULt]	(((((.(((((((((((.(((..&..)))-)))))))))))-)))))	GAGAGAAGAGAAGAUAGUAGGGA&AACUU-CUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11800_c0_g1_533_TPlot.pdf
TRINITY_DN11814_c1_g1:613	si_s746	TRINITY_DN11814_c1_g1	602	622	613	-27.00	-17.70	0.655555555555556	8	2-15,621-608	1-1,622-622[UP5];16-21,607-602[UP3]	......((((((((((((((.&.))))))))))))))......	UAUUUAUAAGGUUAAUCUAUA&AAUAGAUUGACCUUAAAACAA	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN11814_c1_g1_613_TPlot.pdf
TRINITY_DN11819_c0_g2:1081	si_s89	TRINITY_DN11819_c0_g2	1069	1093	1081	-35.30	-24.90	0.705382436260623	8	1-7,1093-1087;8-15,1083-1076;17-21,1073-1069	x-x,1086-1084[BULt];16-16,1075-1074[AILt]	(((((..((((((((...(((((((&)))))))---))))))))-.)))))	CGAAGAAGAAGAAGAAGUAGAAAGG&CCUUUCU---UCUUCUUC-GCUUCG	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN11819_c0_g2_1081_TPlot.pdf
TRINITY_DN11819_c0_g2:1084	si_s83	TRINITY_DN11819_c0_g2	1073	1094	1084	-30.90	-23.20	0.750809061488673	6	1-7,1094-1088;9-21,1085-1073	8-8,1087-1086[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	GAAGAAGAAGAAGUAGAAAGGA&UUCUUUC-CUUUCUUCUUCUUC	3	0.999998517350522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN11819_c0_g2_1084_TPlot.pdf
TRINITY_DN11819_c0_g2:1086	si_s81	TRINITY_DN11819_c0_g2	1075	1096	1086	-28.90	-19.30	0.667820069204152	9	3-9,1094-1088;11-21,1085-1075	1-2,1096-1095[UP5];10-10,1087-1086[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	AGAAGAAGAAGUAGAAAGGAUG&UUUUCUUUC-CUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN11819_c0_g2_1086_TPlot.pdf
TRINITY_DN11819_c0_g2:910	si_a885	TRINITY_DN11819_c0_g2	899	920	910	-25.60	-17.10	0.66796875	10.5	1-9,920-912;12-19,908-901	10-11,911-909[AILt];20-21,900-899[UP3]	..((((((((...(((((((((&)))))))))-..))))))))..	GAUGUUACUGCAUUUGGUUGCA&UGCAAUCAA-UAUAGUAAUAAU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN11819_c0_g2_910_TPlot.pdf
TRINITY_DN11819_c0_g2:913	si_a883	TRINITY_DN11819_c0_g2	901	922	913	-27.20	-17.80	0.654411764705882	8	2-11,921-912;14-21,908-901	1-1,922-922[UP5];12-13,911-909[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	UGUUACUGCAUUUGGUUGCAAA&GUUGCAAUCAA-UAUAGUAAUA	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN11819_c0_g2_913_TPlot.pdf
TRINITY_DN1181_c0_g1:1008	si_a315	TRINITY_DN1181_c0_g1	997	1020	1008	-27.00	-18.04	0.668148148148148	11.5	2-7,1019-1014;9-21,1009-997	1-1,1020-1020[UP5];8-8,1013-1010[AILt]	(((((((((((((....((((((.&.))))))---.)))))))))))))	AGAAGAUUAUGGAAAAGGAAUCCU&UGGAUUU---AUCCAUGAUUUUUU	3	0.999990257383135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN1181_c0_g1_1008_TPlot.pdf
TRINITY_DN11826_c1_g1:676	si_s76	TRINITY_DN11826_c1_g1	665	685	676	-23.60	-16.40	0.694915254237288	10.5	3-17,683-669	1-2,685-684[UP5];18-21,668-665[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUAUAGGGAAGGAGAAGAAGA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11826_c1_g1_676_TPlot.pdf
TRINITY_DN1182_c0_g1:1006	si_s362	TRINITY_DN1182_c0_g1	993	1015	1006	-34.70	-23.00	0.662824207492795	11	4-10,1012-1006;12-13,1003-1002;14-21,1000-993	1-3,1015-1013[UP5];11-11,1005-1004[AILt];x-x,1001-1001[BULt]	((((((((.((..(((((((...&...)))))))-.))-))))))))	GAGCGAUCAGGCAUCAGUCUUGU&AAUAGAUUGA-ACC-GAUCGCUC	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN1182_c0_g1_1006_TPlot.pdf
TRINITY_DN1182_c0_g1:10101	si_a465	TRINITY_DN1182_c0_g1	10090	10110	10101	-20.90	-14.50	0.69377990430622	14	8-21,10103-10090	1-7,10110-10104[UP5]	((((((((((((((.......&.......))))))))))))))	CAGUAAUUGCAUAUAUAGAAC&AUAUAUAAUAUGUAAUUAUUG	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN1182_c0_g1_10101_TPlot.pdf
TRINITY_DN1182_c0_g1:1204	si_s797	TRINITY_DN1182_c0_g1	1186	1213	1204	-30.00	-19.70	0.656666666666667	20.5	1-11,1213-1203;12-18,1195-1189	x-x,1202-1196[BULt];19-21,1188-1186[UP3]	...(((((((.......(((((((((((&)))))))))))-------)))))))...	GGUCGAAGGUCGAAAAAGAGAUACGGGC&GCUCGUAUUUU-------AUCUUCGUUA	3	0.999999995180967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN1182_c0_g1_1204_TPlot.pdf
TRINITY_DN1182_c0_g1:1206	si_s795	TRINITY_DN1182_c0_g1	1188	1215	1206	-30.30	-21.00	0.693069306930693	12	2-13,1214-1203;14-20,1195-1189	1-1,1215-1215[UP5];x-x,1202-1196[BULt];21-21,1188-1188[UP3]	.(((((((.......((((((((((((.&.))))))))))))-------))))))).	UCGAAGGUCGAAAAAGAGAUACGGGCUC&AAGCUCGUAUUUU-------AUCUUCGU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN1182_c0_g1_1206_TPlot.pdf
TRINITY_DN1182_c0_g1:13240	si_a869	TRINITY_DN1182_c0_g1	13229	13249	13240	-24.80	-16.40	0.661290322580645	10.5	2-5,13248-13245;8-19,13242-13231	1-1,13249-13249[UP5];6-7,13244-13243[SIL];20-21,13230-13229[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	UAGUAGCUGAGUCUGAAAUGC&UUAUUAAAGAUUUAGUUGCAA	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN1182_c0_g1_13240_TPlot.pdf
TRINITY_DN1182_c0_g1:13618	si_a535	TRINITY_DN1182_c0_g1	13607	13627	13618	-39.60	-28.10	0.70959595959596	6	2-13,13626-13615;16-18,13612-13610	1-1,13627-13627[UP5];14-15,13614-13613[SIL];19-21,13609-13607[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	UCUUUGUCCCGAUCGCUCGCU&CGCGAGCGAUCGGUUCAAUCU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN1182_c0_g1_13618_TPlot.pdf
TRINITY_DN1182_c0_g1:13675	si_a262	TRINITY_DN1182_c0_g1	13665	13684	13675	-40.30	-27.10	0.672456575682382	8.5	4-12,13681-13673;15-20,13671-13666	1-3,13684-13682[UP5];13-14,13672-13672[AILq];21-21,13665-13665[UP3]	.((((((.-(((((((((...&...)))))))))..)))))).	GGUGGGCC-UUGCCCUCGUCG&UAUCGAGGGCAAACGCCUACG	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a262_TRINITY_DN1182_c0_g1_13675_TPlot.pdf
TRINITY_DN1182_c0_g1:14099	si_a23	TRINITY_DN1182_c0_g1	14088	14108	14099	-22.80	-15.10	0.662280701754386	16.5	7-21,14102-14088	1-6,14108-14103[UP5]	(((((((((((((((......&......)))))))))))))))	UCUUGGGGCUGGGAGGAGUUG&UAUUUAUUUUUAGUUCUAAGA	4	0.99999881361456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1182_c0_g1_14099_TPlot.pdf
TRINITY_DN1182_c0_g1:4832	si_s666	TRINITY_DN1182_c0_g1	4820	4842	4832	-31.30	-22.20	0.70926517571885	10	1-3,4842-4840;4-10,4838-4832;12-20,4829-4821	x-x,4839-4839[BULt];11-11,4831-4830[AILt];21-21,4820-4820[UP3]	.(((((((((..(((((((.(((&)))-)))))))-.))))))))).	AUCUAUGGUCUCGUUCGGUGCCC&GGG-AUCGAAU-UGAUUAUAGAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN1182_c0_g1_4832_TPlot.pdf
TRINITY_DN1182_c0_g1:4890	si_s797	TRINITY_DN1182_c0_g1	4879	4899	4890	-30.00	-22.80	0.76	7	1-16,4899-4884	17-21,4883-4879[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCCUUAAGAUAGAGUACGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN1182_c0_g1_4890_TPlot.pdf
TRINITY_DN1182_c0_g1:4893	si_s794	TRINITY_DN1182_c0_g1	4882	4902	4893	-31.20	-22.90	0.733974358974359	8.5	4-19,4899-4884	1-3,4902-4900[UP5];20-21,4883-4882[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAAGAUAGAGUACGAGCAAG&CAAGCUCGUAUUUUAUCUUCG	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN1182_c0_g1_4893_TPlot.pdf
TRINITY_DN1182_c0_g1:4897	si_s790	TRINITY_DN1182_c0_g1	4886	4906	4897	-27.80	-20.90	0.751798561151079	14	8-21,4899-4886	1-7,4906-4900[UP5]	((((((((((((((.......&.......))))))))))))))	GAUAGAGUACGAGCAAGCAAU&AAAACAAGCUCGUAUUUUAUC	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN1182_c0_g1_4897_TPlot.pdf
TRINITY_DN1182_c0_g1:5006	si_s188	TRINITY_DN1182_c0_g1	4998	5015	5006	-28.20	-20.02	0.709929078014184	8.5	1-11,5015-5005;17-21,5002-4998	12-16,5004-5003[AILq]	(((((..---(((((((((((&))))))))))).....)))))	GUUCCUG---AGUCGUUGCUC&GAGUAACGAUUAUUUUGGAAU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN1182_c0_g1_5006_TPlot.pdf
TRINITY_DN1182_c0_g1:5103	si_s629	TRINITY_DN1182_c0_g1	5092	5112	5103	-34.60	-22.50	0.65028901734104	8	1-5,5112-5108;7-17,5106-5096	6-6,5107-5107[SIL];18-21,5095-5092[UP3]	....(((((((((((.(((((&))))).)))))))))))....	GCCUUGUCUGCGAAAUGAUCG&CGAUCUUUUCGUAGGCGUUUG	2	0.99888131038216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN1182_c0_g1_5103_TPlot.pdf
TRINITY_DN1182_c0_g1:5107	si_s625	TRINITY_DN1182_c0_g1	5096	5116	5107	-37.00	-24.30	0.656756756756757	7.5	1-2,5116-5115;5-9,5112-5108;11-21,5106-5096	3-4,5114-5113[SIL];10-10,5107-5107[SIL]	(((((((((((.(((((..((&))..))))).)))))))))))	UGUCUGCGAAAUGAUCGGCUG&CAAGCGAUCUUUUCGUAGGCG	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN1182_c0_g1_5107_TPlot.pdf
TRINITY_DN1182_c0_g1:5868	si_a621	TRINITY_DN1182_c0_g1	5857	5877	5868	-36.40	-24.10	0.662087912087912	6	1-10,5877-5868;12-13,5866-5865;16-16,5862-5862;18-21,5860-5857	11-11,5867-5867[SIL];14-15,5864-5863[SIL];17-17,5861-5861[SIL]	((((.(..((.((((((((((&)))))))))).))..).))))	UCGAGAGCAUCCGCCUGGUCG&CGACUAGGCGUAUUAUGUCGA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a621_TRINITY_DN1182_c0_g1_5868_TPlot.pdf
TRINITY_DN1182_c0_g1:6974	si_a635	TRINITY_DN1182_c0_g1	6962	6983	6974	-26.10	-17.20	0.659003831417624	10.5	3-10,6981-6974;12-13,6972-6971;15-21,6968-6962	1-2,6983-6982[UP5];11-11,6973-6973[SIL];14-14,6970-6969[AILt]	(((((((..((.((((((((..&..)))))))).))-.)))))))	GUUGCUCUUGACGGAUCGACGA&AUGUCGAUUUUUU-UGAGUAAU	3	0.999999999995444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1182_c0_g1_6974_TPlot.pdf
TRINITY_DN1182_c0_g1:7550	si_a54	TRINITY_DN1182_c0_g1	7539	7559	7550	-37.30	-25.70	0.689008042895442	7.5	1-5,7559-7555;6-8,7553-7551;10-19,7550-7541	x-x,7554-7554[BULt];9-9,x-x[BULq];20-21,7540-7539[UP3]	..((((((((((-(((.(((((&)))))-))).))))))))))..	AUGGAGGCGAGU-GACGUCCUG&UAGGA-GUCGACUCGCUUCUUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN1182_c0_g1_7550_TPlot.pdf
TRINITY_DN1182_c0_g1:8492	si_a500	TRINITY_DN1182_c0_g1	8481	8501	8492	-34.40	-24.60	0.715116279069767	8.5	1-4,8501-8498;7-20,8495-8482	5-6,8497-8496[SIL];21-21,8481-8481[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	GUCAAGGAGGACGAGCUGCGG&UCGUUUUUCGUCUUCCUUGGA	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1182_c0_g1_8492_TPlot.pdf
TRINITY_DN1182_c0_g1:8493	si_a499	TRINITY_DN1182_c0_g1	8482	8502	8493	-35.20	-24.60	0.698863636363636	9	2-5,8501-8498;8-21,8495-8482	1-1,8502-8502[UP5];6-7,8497-8496[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	UCAAGGAGGACGAGCUGCGGG&GUCGUUUUUCGUCUUCCUUGG	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1182_c0_g1_8493_TPlot.pdf
TRINITY_DN1182_c0_g1:851	si_s656	TRINITY_DN1182_c0_g1	834	860	851	-35.20	-23.66	0.672159090909091	10.5	1-13,860-848;15-21,840-834	14-14,847-841[AILt]	(((((((.......(((((((((((((&)))))))))))))------.)))))))	GAUUCGAGUGUCACCCCUCGGUUGUGU&AUACAAUCGGGGG------AUCGAAUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s656_TRINITY_DN1182_c0_g1_851_TPlot.pdf
TRINITY_DN1182_c0_g1:8526	si_a301	TRINITY_DN1182_c0_g1	8515	8535	8526	-27.80	-18.50	0.665467625899281	17	9-21,8527-8515	1-8,8535-8528[UP5]	(((((((((((((........&........)))))))))))))	AGAUCCGAGCGGAGAUGGCCG&AAAAAAGAUUCGCUUGGAUUU	4	0.999972084218589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN1182_c0_g1_8526_TPlot.pdf
TRINITY_DN1182_c0_g1:8910	si_a113	TRINITY_DN1182_c0_g1	8899	8919	8910	-26.20	-17.70	0.675572519083969	15	7-18,8913-8902	1-6,8919-8914[UP5];19-21,8901-8899[UP3]	...((((((((((((......&......))))))))))))...	CGCAGAGCAAGCUCGAGGACG&AAAAUACGAGCUUGUUUUAUA	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN1182_c0_g1_8910_TPlot.pdf
TRINITY_DN1182_c0_g1:8911	si_a112	TRINITY_DN1182_c0_g1	8900	8920	8911	-26.20	-17.70	0.675572519083969	16	8-19,8913-8902	1-7,8920-8914[UP5];20-21,8901-8900[UP3]	..((((((((((((.......&.......))))))))))))..	GCAGAGCAAGCUCGAGGACGU&UAAAAUACGAGCUUGUUUUAU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN1182_c0_g1_8911_TPlot.pdf
TRINITY_DN11832_c0_g1:1057	si_s72	TRINITY_DN11832_c0_g1	1046	1066	1057	-24.10	-15.80	0.655601659751037	8	1-4,1066-1063;7-9,1060-1058;11-21,1056-1046	5-6,1062-1061[SIL];10-10,1057-1057[SIL]	(((((((((((.(((..((((&))))..))).)))))))))))	AAGGAAAGAAGCGAACAAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11832_c0_g1_1057_TPlot.pdf
TRINITY_DN11832_c0_g1:1058	si_s71	TRINITY_DN11832_c0_g1	1047	1067	1058	-25.70	-18.00	0.700389105058366	8	1-5,1067-1063;8-10,1060-1058;12-21,1056-1047	6-7,1062-1061[SIL];11-11,1057-1057[SIL]	((((((((((.(((..(((((&)))))..))).))))))))))	AGGAAAGAAGCGAACAAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN11832_c0_g1_1058_TPlot.pdf
TRINITY_DN11832_c0_g1:1515	si_s68	TRINITY_DN11832_c0_g1	1503	1527	1515	-23.10	-15.50	0.670995670995671	9.5	1-6,1527-1522;7-13,1518-1512;14-21,1510-1503	x-x,1521-1519[BULt];x-x,1511-1511[BULt]	((((((((.(((((((...((((((&))))))---)))))))-))))))))	GAGGAAGACAAAGUAGUGAAAGUUG&CAACUU---CUAUUUU-UUUUCUUU	2	0.99999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11832_c0_g1_1515_TPlot.pdf
TRINITY_DN11832_c0_g1:1556	si_s77	TRINITY_DN11832_c0_g1	1545	1565	1556	-25.50	-22.30	0.874509803921569	4	2-20,1564-1546	1-1,1565-1565[UP5];21-21,1545-1545[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UAAGGGAGGAAAGAAAAAGAG&UUUUUUUUCUUUCCUUUCUUC	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11832_c0_g1_1556_TPlot.pdf
TRINITY_DN11832_c0_g1:1558	si_s75	TRINITY_DN11832_c0_g1	1547	1567	1558	-24.00	-21.60	0.9	7	4-21,1564-1547	1-3,1567-1565[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGGAGGAAAGAAAAAGAGAU&UAUUUUUUUUCUUUCCUUUCU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN11832_c0_g1_1558_TPlot.pdf
TRINITY_DN11832_c0_g1:1559	si_s74	TRINITY_DN11832_c0_g1	1548	1568	1559	-25.00	-20.30	0.812	9	5-21,1564-1548	1-4,1568-1565[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGGAGGAAAGAAAAAGAGAUA&CUAUUUUUUUUCUUUCCUUUC	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11832_c0_g1_1559_TPlot.pdf
TRINITY_DN11832_c0_g1:972	si_a784	TRINITY_DN11832_c0_g1	950	981	972	-24.70	-16.30	0.659919028340081	25	2-10,980-972;11-21,960-950	1-1,981-981[UP5];x-x,971-961[BULt]	(((((((((((...........(((((((((.&.)))))))))-----------)))))))))))	AAAAUAGAAGACGUUAGAGUGUAUAGAGGAGC&ACUCUUCUAU-----------UUUUCUAUUUU	2	0.999999999999915	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11832_c0_g1_972_TPlot.pdf
TRINITY_DN11834_c2_g1:160	si_a828	TRINITY_DN11834_c2_g1	149	169	160	-24.10	-15.70	0.651452282157676	4	2-12,168-158;14-21,156-149	1-1,169-169[UP5];13-13,157-157[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UUCUAUUUAUUUUUUUUUCUG&AAGGAAAGAAAAAAAAUAGAA	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN11834_c2_g1_160_TPlot.pdf
TRINITY_DN1183_c0_g1:1039	si_a325	TRINITY_DN1183_c0_g1	1028	1048	1039	-25.90	-17.00	0.656370656370656	8.5	2-9,1047-1040;12-20,1037-1029	1-1,1048-1048[UP5];10-11,1039-1038[SIL];21-21,1028-1028[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CCAAGGGAUGUCGAAAUCAUC&CAUGAUUUUUUUAUUCCUUGU	3	0.999999931658372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN1183_c0_g1_1039_TPlot.pdf
TRINITY_DN1183_c0_g1:1393	si_s68	TRINITY_DN1183_c0_g1	1382	1403	1393	-23.10	-15.20	0.658008658008658	9.5	4-6,1400-1398;7-20,1396-1383	1-3,1403-1401[UP5];x-x,1397-1397[BULt];21-21,1382-1382[UP3]	.((((((((((((((.(((...&...)))-)))))))))))))).	CAAGAAAGAAAAUGGUAAGGAA&CAACUU-CUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1183_c0_g1_1393_TPlot.pdf
TRINITY_DN1183_c0_g1:1968	si_s897	TRINITY_DN1183_c0_g1	1958	1978	1968	-31.30	-20.50	0.654952076677316	6.5	1-5,1978-1974;6-13,1972-1965;16-20,1963-1959	x-x,1973-1973[BULt];14-15,1964-1964[AILq];21-21,1958-1958[UP3]	.(((((.-((((((((.(((((&)))))-))))))))..))))).	GUGAGAA-GAAGAGAAUGGCCU&AGGCU-UUCUCUUCAAUUUCAA	3	0.999999943041421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN1183_c0_g1_1968_TPlot.pdf
TRINITY_DN1183_c0_g1:2605	si_a642	TRINITY_DN1183_c0_g1	2594	2614	2605	-25.90	-18.50	0.714285714285714	6	1-12,2614-2603;15-21,2600-2594	13-14,2602-2601[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	CUGAUAUUAUACUCAAGAGGG&UUUUUUUGAGUAAUAUAUCGG	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN1183_c0_g1_2605_TPlot.pdf
TRINITY_DN1183_c0_g1:2606	si_a641	TRINITY_DN1183_c0_g1	2595	2615	2606	-23.60	-15.50	0.656779661016949	7.5	2-13,2614-2603;16-21,2600-2595	1-1,2615-2615[UP5];14-15,2602-2601[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UGAUAUUAUACUCAAGAGGGC&AUUUUUUUGAGUAAUAUAUCG	2	0.999170182561266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN1183_c0_g1_2606_TPlot.pdf
TRINITY_DN1183_c0_g1:275	si_a203	TRINITY_DN1183_c0_g1	264	283	275	-26.90	-17.60	0.654275092936803	10	2-9,282-275;12-18,273-267	1-1,283-283[UP5];10-11,274-274[AILq];19-21,266-264[UP3]	...(((((((.-((((((((.&.))))))))..)))))))...	UUGUAGUCGAG-UGUUGGUGC&UCACUAAUAAAUCGACUAAUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN1183_c0_g1_275_TPlot.pdf
TRINITY_DN1183_c0_g1:333	si_a638	TRINITY_DN1183_c0_g1	319	342	333	-24.40	-16.20	0.663934426229508	9	3-15,340-328;16-20,324-320	1-2,342-341[UP5];x-x,327-325[BULt];21-21,319-319[UP3]	.(((((...(((((((((((((..&..)))))))))))))---))))).	AGUGUUUUAACUCAAAAAGAUCAA&UCGAUUUUUUUGAGU---AAUAUA	4	0.999999663202245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN1183_c0_g1_333_TPlot.pdf
TRINITY_DN11841_c0_g1:1662	si_a627	TRINITY_DN11841_c0_g1	1651	1670	1662	-29.50	-19.90	0.674576271186441	8	1-4,1670-1667;6-11,1666-1661;13-18,1659-1654	5-5,x-x[BULq];12-12,1660-1660[SIL];19-21,1653-1651[UP3]	...((((((.((((((-((((&)))).)))))).))))))...	CGCAAAUCGUCAUAGU-CGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN11841_c0_g1_1662_TPlot.pdf
TRINITY_DN11841_c0_g1:1664	si_a625	TRINITY_DN11841_c0_g1	1653	1672	1664	-30.60	-20.00	0.65359477124183	8	3-6,1670-1667;8-13,1666-1661;15-20,1659-1654	1-2,1672-1671[UP5];7-7,x-x[BULq];14-14,1660-1660[SIL];21-21,1653-1653[UP3]	.((((((.((((((-((((..&..)))).)))))).)))))).	CAAAUCGUCAUAGU-CGCCAA&UAGGCGUAUUAUGUCGAUUUU	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN11841_c0_g1_1664_TPlot.pdf
TRINITY_DN11841_c0_g1:1769	si_s810	TRINITY_DN11841_c0_g1	1758	1779	1769	-27.90	-19.20	0.688172043010753	11.5	1-4,1779-1776;5-16,1774-1763	x-x,1775-1775[BULt];17-21,1762-1758[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	ACGGUGGAAAGGGUGGCUGAGG&CUUC-GUUACCUUUUCUUAAUA	4	0.999950241653235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN11841_c0_g1_1769_TPlot.pdf
TRINITY_DN11841_c0_g1:1770	si_s809	TRINITY_DN11841_c0_g1	1759	1780	1770	-28.50	-20.80	0.729824561403509	10.5	1-5,1780-1776;6-17,1774-1763	x-x,1775-1775[BULt];18-21,1762-1759[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	CGGUGGAAAGGGUGGCUGAGGA&UCUUC-GUUACCUUUUCUUAAU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN11841_c0_g1_1770_TPlot.pdf
TRINITY_DN11841_c0_g1:1771	si_s808	TRINITY_DN11841_c0_g1	1760	1781	1771	-28.60	-20.80	0.727272727272727	10	2-6,1780-1776;7-18,1774-1763	1-1,1781-1781[UP5];x-x,1775-1775[BULt];19-21,1762-1760[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	GGUGGAAAGGGUGGCUGAGGAA&AUCUUC-GUUACCUUUUCUUAA	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN11841_c0_g1_1771_TPlot.pdf
TRINITY_DN11841_c0_g1:1774	si_s805	TRINITY_DN11841_c0_g1	1763	1784	1774	-28.60	-20.80	0.727272727272727	13	5-9,1780-1776;10-21,1774-1763	1-4,1784-1781[UP5];x-x,1775-1775[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	GGAAAGGGUGGCUGAGGAAGAG&UUUAUCUUC-GUUACCUUUUCU	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN11841_c0_g1_1774_TPlot.pdf
TRINITY_DN11841_c0_g1:1776	si_s804	TRINITY_DN11841_c0_g1	1764	1785	1776	-27.90	-19.90	0.71326164874552	10	2-4,1784-1782;6-10,1780-1776;11-21,1774-1764	1-1,1785-1785[UP5];5-5,1781-1781[SIL];x-x,1775-1775[BULt]	(((((((((((.(((((.(((.&.))).)))))-)))))))))))	GAAAGGGUGGCUGAGGAAGAGG&UUUUAUCUUC-GUUACCUUUUC	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN11841_c0_g1_1776_TPlot.pdf
TRINITY_DN11841_c0_g1:1785	si_a499	TRINITY_DN11841_c0_g1	1774	1795	1785	-35.20	-23.00	0.653409090909091	9	1-4,1795-1792;6-10,1789-1785;12-21,1783-1774	5-5,1791-1790[AILt];11-11,1784-1784[SIL]	((((((((((.(((((..((((&))))-.))))).))))))))))	CUGAGGAAGAGGAAGACCUGAC&GUCG-UUUUUCGUCUUCCUUGG	3	0.999999999999794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN11841_c0_g1_1785_TPlot.pdf
TRINITY_DN11841_c0_g1:1886	si_s569	TRINITY_DN11841_c0_g1	1875	1895	1886	-30.60	-20.60	0.673202614379085	10	2-13,1894-1883	1-1,1895-1895[UP5];14-21,1882-1875[UP3]	........((((((((((((.&.))))))))))))........	GACACCUGUUCUUGUCCCGAG&UUCGGGACAAGGAAUAAAAAA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN11841_c0_g1_1886_TPlot.pdf
TRINITY_DN11841_c0_g1:1889	si_s566	TRINITY_DN11841_c0_g1	1878	1898	1889	-30.70	-22.30	0.726384364820847	9.5	3-16,1896-1883	1-2,1898-1897[UP5];17-21,1882-1878[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACCUGUUCUUGUCCCGAGAUG&AUUUUCGGGACAAGGAAUAAA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s566_TRINITY_DN11841_c0_g1_1889_TPlot.pdf
TRINITY_DN11841_c0_g1:1891	si_s564	TRINITY_DN11841_c0_g1	1880	1900	1891	-31.20	-22.30	0.71474358974359	11.5	5-18,1896-1883	1-4,1900-1897[UP5];19-21,1882-1880[UP3]	...((((((((((((((....&....))))))))))))))...	CUGUUCUUGUCCCGAGAUGAA&AUAUUUUCGGGACAAGGAAUA	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s564_TRINITY_DN11841_c0_g1_1891_TPlot.pdf
TRINITY_DN11841_c0_g1:1892	si_s563	TRINITY_DN11841_c0_g1	1881	1901	1892	-30.80	-22.30	0.724025974025974	12.5	6-19,1896-1883	1-5,1901-1897[UP5];20-21,1882-1881[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGUUCUUGUCCCGAGAUGAAG&AAUAUUUUCGGGACAAGGAAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN11841_c0_g1_1892_TPlot.pdf
TRINITY_DN11841_c0_g1:3055	si_a70	TRINITY_DN11841_c0_g1	3044	3064	3055	-23.90	-15.96	0.667782426778243	11.5	1-6,3064-3059;11-20,3054-3045	7-10,3058-3055[SIL];21-21,3044-3044[UP3]	.((((((((((....((((((&))))))....)))))))))).	UGUGAAGAGCGCGAGGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999999999944512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN11841_c0_g1_3055_TPlot.pdf
TRINITY_DN11841_c0_g1:3056	si_a69	TRINITY_DN11841_c0_g1	3045	3065	3056	-24.00	-16.36	0.681666666666667	11	1-7,3065-3059;12-21,3054-3045	8-11,3058-3055[SIL]	((((((((((....(((((((&)))))))....))))))))))	GUGAAGAGCGCGAGGAAAGAG&UUCUUUCAAAUUGUUUUUCAU	3	0.999999988256462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN11841_c0_g1_3056_TPlot.pdf
TRINITY_DN11841_c0_g1:3057	si_a68	TRINITY_DN11841_c0_g1	3046	3066	3057	-25.40	-17.76	0.699212598425197	10.5	1-8,3066-3059;13-21,3054-3046	9-12,3058-3055[SIL]	(((((((((....((((((((&))))))))....)))))))))	UGAAGAGCGCGAGGAAAGAGG&CUUCUUUCAAAUUGUUUUUCA	4	0.999997841227763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN11841_c0_g1_3057_TPlot.pdf
TRINITY_DN11841_c0_g1:3062	si_s67	TRINITY_DN11841_c0_g1	3048	3070	3062	-25.60	-16.80	0.65625	8	1-9,3070-3062;11-16,3061-3056;17-21,3052-3048	10-10,x-x[BULq];x-x,3055-3053[BULt]	(((((...((((((-(((((((((&))))))))).))))))---)))))	AAGAGCGCGAGGAA-AGAGGUUGC&GCAACUUCUAUUUUUU---UUCUU	4	0.999999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN11841_c0_g1_3062_TPlot.pdf
TRINITY_DN11841_c0_g1:3066	si_s809	TRINITY_DN11841_c0_g1	3054	3075	3066	-28.50	-18.60	0.652631578947368	9	1-7,3075-3069;9-15,3067-3061;16-18,3059-3057	8-8,3068-3068[SIL];x-x,3060-3060[BULt];19-21,3056-3054[UP3]	...(((.(((((((.(((((((&))))))).)))))))-)))...	GCGAGGAAAGAGGUUGCGGAGA&UCUUCGUUACCUUUU-CUUAAU	4	0.999999999998439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN11841_c0_g1_3066_TPlot.pdf
TRINITY_DN11841_c0_g1:3067	si_s808	TRINITY_DN11841_c0_g1	3055	3076	3067	-28.60	-18.60	0.65034965034965	9	2-8,3075-3069;10-16,3067-3061;17-19,3059-3057	1-1,3076-3076[UP5];9-9,3068-3068[SIL];x-x,3060-3060[BULt];20-21,3056-3055[UP3]	..(((.(((((((.(((((((.&.))))))).)))))))-)))..	CGAGGAAAGAGGUUGCGGAGAC&AUCUUCGUUACCUUUU-CUUAA	4	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN11841_c0_g1_3067_TPlot.pdf
TRINITY_DN11841_c0_g1:3176	si_s466	TRINITY_DN11841_c0_g1	3165	3185	3176	-36.40	-24.40	0.67032967032967	8.5	2-7,3184-3179;10-14,3176-3172;16-21,3170-3165	1-1,3185-3185[UP5];8-9,3178-3177[SIL];15-15,3171-3171[SIL]	((((((.(((((..((((((.&.))))))..))))).))))))	AGGAUUGGUUGGCAGUGGGAA&AUCUCAUAUCCAACGGAUCCU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s466_TRINITY_DN11841_c0_g1_3176_TPlot.pdf
TRINITY_DN11841_c0_g1:5581	si_s870	TRINITY_DN11841_c0_g1	5570	5590	5581	-32.70	-23.10	0.706422018348624	10	1-14,5590-5577	15-21,5576-5570[UP3]	.......((((((((((((((&)))))))))))))).......	UACUCCCUCUGAGACUGGUGG&CUACCGGUCUUAGAACUAAAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s870_TRINITY_DN11841_c0_g1_5581_TPlot.pdf
TRINITY_DN11841_c0_g1:5583	si_s868	TRINITY_DN11841_c0_g1	5572	5592	5583	-35.90	-23.50	0.654596100278552	10.5	3-16,5590-5577	1-2,5592-5591[UP5];17-21,5576-5572[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUCCCUCUGAGACUGGUGGAG&ACCUACCGGUCUUAGAACUAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN11841_c0_g1_5583_TPlot.pdf
TRINITY_DN11841_c0_g1:5588	si_s863	TRINITY_DN11841_c0_g1	5577	5599	5588	-40.10	-26.40	0.658354114713217	10	1-2,5599-5598;5-9,5595-5591;10-21,5588-5577	3-4,5597-5596[SIL];x-x,5590-5589[BULt]	((((((((((((..(((((..((&))..)))))--))))))))))))	UCUGAGACUGGUGGAGGUUGCGG&CCUAGACCU--ACCGGUCUUAGA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s863_TRINITY_DN11841_c0_g1_5588_TPlot.pdf
TRINITY_DN11841_c0_g1:5591	si_s64	TRINITY_DN11841_c0_g1	5580	5600	5591	-24.10	-16.60	0.688796680497925	11	4-15,5597-5586;18-21,5583-5580	1-3,5600-5598[UP5];16-17,5585-5584[SIL]	((((..((((((((((((...&...))))))))))))..))))	GAGACUGGUGGAGGUUGCGGU&UUAGCAACUUCUAUUUUUUUU	4	0.999999720304535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN11841_c0_g1_5591_TPlot.pdf
TRINITY_DN11841_c0_g1:5594	si_s61	TRINITY_DN11841_c0_g1	5583	5605	5594	-26.50	-18.50	0.69811320754717	11.5	2-6,5604-5600;7-18,5597-5586	1-1,5605-5605[UP5];x-x,5599-5598[BULt];19-21,5585-5583[UP3]	...((((((((((((..(((((.&.)))))--))))))))))))...	ACUGGUGGAGGUUGCGGUGACUG&AAGUUA--GCAACUUCUAUUUUU	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN11841_c0_g1_5594_TPlot.pdf
TRINITY_DN11841_c0_g1:5595	si_s60	TRINITY_DN11841_c0_g1	5584	5606	5595	-28.20	-18.50	0.656028368794326	12	3-7,5604-5600;8-19,5597-5586	1-2,5606-5605[UP5];x-x,5599-5598[BULt];20-21,5585-5584[UP3]	..((((((((((((..(((((..&..)))))--))))))))))))..	CUGGUGGAGGUUGCGGUGACUGU&CAAGUUA--GCAACUUCUAUUUU	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN11841_c0_g1_5595_TPlot.pdf
TRINITY_DN11846_c0_g1:423	si_a677	TRINITY_DN11846_c0_g1	411	431	423	-35.40	-23.40	0.661016949152542	5.5	1-6,431-426;8-12,425-421;13-20,419-412	7-7,x-x[BULq];x-x,420-420[BULt];21-21,411-411[UP3]	.((((((((.(((((-((((((&)))))).)))))-)))))))).	AGAAAUCGCGGUGAA-AAGGAA&UUCCUUAUUCAC-GCGGUUUCG	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN11846_c0_g1_423_TPlot.pdf
TRINITY_DN11849_c0_g1:350	si_s502	TRINITY_DN11849_c0_g1	338	359	350	-22.40	-14.90	0.665178571428572	9.5	3-11,357-349;13-19,346-340	1-2,359-358[UP5];12-12,348-347[AILt];20-21,339-338[UP3]	..(((((((..(((((((((..&..)))))))))-.)))))))..	UUUAUAGGAGGUGUUUUGUUAG&UAAACAAAACA-AUUCUAUAUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN11849_c0_g1_350_TPlot.pdf
TRINITY_DN1184_c0_g1:286	si_a666	TRINITY_DN1184_c0_g1	275	296	286	-31.60	-21.50	0.680379746835443	9.5	3-4,294-293;5-17,291-279	1-2,296-295[UP5];x-x,292-292[BULt];18-21,278-275[UP3]	....(((((((((((((.((..&..))-)))))))))))))....	AGUAGAGGAAUCAAUAGAGCUC&AUGC-CUAUUGAUUCCUUAUUC	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN1184_c0_g1_286_TPlot.pdf
TRINITY_DN1184_c0_g1:288	si_a664	TRINITY_DN1184_c0_g1	277	298	288	-29.60	-21.50	0.726351351351351	11.5	5-6,294-293;7-19,291-279	1-4,298-295[UP5];x-x,292-292[BULt];20-21,278-277[UP3]	..(((((((((((((.((....&....))-)))))))))))))..	UAGAGGAAUCAAUAGAGCUCGG&AAAUGC-CUAUUGAUUCCUUAU	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN1184_c0_g1_288_TPlot.pdf
TRINITY_DN1184_c0_g1:290	si_a662	TRINITY_DN1184_c0_g1	279	302	290	-33.40	-25.38	0.759880239520958	10.5	1-4,302-299;7-8,294-293;9-21,291-279	5-6,298-295[AILt];x-x,292-292[BULt]	(((((((((((((.((....((((&))))--..))-)))))))))))))	GAGGAAUCAAUAGAGCUCGGUUCC&GGAA--AUGC-CUAUUGAUUCCUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a662_TRINITY_DN1184_c0_g1_290_TPlot.pdf
TRINITY_DN1184_c0_g1:522	si_s82	TRINITY_DN1184_c0_g1	512	531	522	-28.90	-19.60	0.678200692041523	5.5	2-15,530-517;17-19,516-514	1-1,531-531[UP5];16-16,x-x[BULq];20-21,513-512[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	GUGAA-AGGAAAGGAAAGAGG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1184_c0_g1_522_TPlot.pdf
TRINITY_DN1184_c0_g1:524	si_s80	TRINITY_DN1184_c0_g1	514	533	524	-28.20	-21.00	0.74468085106383	4.5	2-17,532-517;19-21,516-514	1-1,533-533[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	GAA-AGGAAAGGAAAGAGGAG&UUUUUCUUUCCUUUCUUCUUC	3	0.999999999557893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1184_c0_g1_524_TPlot.pdf
TRINITY_DN1184_c0_g1:525	si_s74	TRINITY_DN1184_c0_g1	514	533	525	-25.00	-20.90	0.836	6	1-2,533-532;4-21,531-514	3-3,x-x[BULq]	((((((((((((((((((-((&)).))))))))))))))))))	GAAAGGAAAGGAAAGAGG-AG&CUAUUUUUUUUCUUUCCUUUC	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1184_c0_g1_525_TPlot.pdf
TRINITY_DN1184_c0_g1:526	si_s73	TRINITY_DN1184_c0_g1	515	534	526	-24.00	-19.50	0.8125	6	1-3,534-532;5-21,531-515	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	AAAGGAAAGGAAAGAGG-AGA&UCUAUUUUUUUUCUUUCCUUU	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1184_c0_g1_526_TPlot.pdf
TRINITY_DN1184_c0_g1:527	si_s77	TRINITY_DN1184_c0_g1	516	536	527	-25.50	-22.10	0.866666666666667	6.5	2-20,535-517	1-1,536-536[UP5];21-21,516-516[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AAGGAAAGGAAAGAGGAGAGU&UUUUUUUUCUUUCCUUUCUUC	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1184_c0_g1_527_TPlot.pdf
TRINITY_DN1184_c0_g1:528	si_s76	TRINITY_DN1184_c0_g1	517	537	528	-23.60	-22.10	0.936440677966102	7.5	3-21,535-517	1-2,537-536[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGGAAAGGAAAGAGGAGAGUU&AUUUUUUUUCUUUCCUUUCUU	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1184_c0_g1_528_TPlot.pdf
TRINITY_DN1184_c0_g1:529	si_s75	TRINITY_DN1184_c0_g1	518	538	529	-24.00	-21.40	0.891666666666667	6.5	1-2,538-537;4-21,535-518	3-3,536-536[SIL]	((((((((((((((((((.((&)).))))))))))))))))))	GGAAAGGAAAGAGGAGAGUUA&UAUUUUUUUUCUUUCCUUUCU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1184_c0_g1_529_TPlot.pdf
TRINITY_DN11852_c0_g2:252	si_s72	TRINITY_DN11852_c0_g2	239	261	252	-24.10	-17.60	0.730290456431535	6.5	1-15,261-247;16-18,245-243;19-21,241-239	x-x,246-246[BULt];x-x,242-242[BULt]	(((.(((.(((((((((((((((&)))))))))))))))-)))-)))	GAGUGAGAAGAAAAGAGAUGGAG&UUCUAUUUUUUUUCU-UUC-CUU	4	0.999999999992811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN11852_c0_g2_252_TPlot.pdf
TRINITY_DN11854_c0_g1:969	si_s74	TRINITY_DN11854_c0_g1	958	978	969	-25.00	-16.40	0.656	18	10-21,969-958	1-9,978-970[UP5]	((((((((((((.........&.........))))))))))))	GAGAGGAGAGAAUGAUGUGCU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11854_c0_g1_969_TPlot.pdf
TRINITY_DN1185_c0_g1:1387	si_a547	TRINITY_DN1185_c0_g1	1375	1396	1387	-26.90	-17.60	0.654275092936803	8.5	1-10,1396-1387;11-17,1385-1379	x-x,1386-1386[BULt];18-21,1378-1375[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	UGCGAAGGAGAUUAGAUUGGAC&GUUCAAUCUA-UUUCUUUAUCU	3	0.999997638163536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN1185_c0_g1_1387_TPlot.pdf
TRINITY_DN1185_c0_g1:1388	si_a546	TRINITY_DN1185_c0_g1	1376	1397	1388	-28.60	-18.70	0.653846153846154	7.5	1-11,1397-1387;12-18,1385-1379	x-x,1386-1386[BULt];19-21,1378-1376[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	GCGAAGGAGAUUAGAUUGGACU&GGUUCAAUCUA-UUUCUUUAUC	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN1185_c0_g1_1388_TPlot.pdf
TRINITY_DN1185_c0_g1:1389	si_a545	TRINITY_DN1185_c0_g1	1377	1398	1389	-28.10	-18.80	0.669039145907473	8	2-12,1397-1387;13-19,1385-1379	1-1,1398-1398[UP5];x-x,1386-1386[BULt];20-21,1378-1377[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	CGAAGGAGAUUAGAUUGGACUU&CGGUUCAAUCUA-UUUCUUUAU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN1185_c0_g1_1389_TPlot.pdf
TRINITY_DN1185_c0_g1:1411	si_a317	TRINITY_DN1185_c0_g1	1399	1419	1411	-24.30	-16.50	0.679012345679012	5.5	1-5,1419-1415;7-17,1414-1404;18-21,1402-1399	6-6,x-x[BULq];x-x,1403-1403[BULt]	((((.(((((((((((-(((((&))))).)))))))))))-))))	UAGACGAGAUCAUGGG-AAAUC&GAUUUAUCCAUGAUUUU-UUUA	4	0.999999884867925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1185_c0_g1_1411_TPlot.pdf
TRINITY_DN1185_c0_g1:1413	si_a315	TRINITY_DN1185_c0_g1	1402	1421	1413	-27.00	-20.10	0.744444444444444	7	2-7,1420-1415;9-19,1414-1404	1-1,1421-1421[UP5];8-8,x-x[BULq];20-21,1403-1402[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	ACGAGAUCAUGGG-AAAUCCU&UGGAUUUAUCCAUGAUUUUUU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN1185_c0_g1_1413_TPlot.pdf
TRINITY_DN1185_c0_g1:2305	si_a456	TRINITY_DN1185_c0_g1	2294	2314	2305	-22.80	-15.90	0.697368421052632	5.5	1-11,2314-2304;13-20,2302-2295	12-12,2303-2303[SIL];21-21,2294-2294[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	AAUAUUGUAAAUAACAAUAGU&AUUGUUGUUAUAUAUAAUAUG	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN1185_c0_g1_2305_TPlot.pdf
TRINITY_DN11865_c0_g1:1662	si_a70	TRINITY_DN11865_c0_g1	1647	1671	1662	-23.90	-15.58	0.651882845188285	13.5	1-10,1671-1662;12-20,1656-1648	11-11,1661-1657[AILt];21-21,1647-1647[UP3]	.(((((((((.....((((((((((&))))))))))----.))))))))).	CAUGGGAAGCUCAGCAUUUGAGAGA&UCUUUCAAAU----UGUUUUUCAUU	4	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN11865_c0_g1_1662_TPlot.pdf
TRINITY_DN11865_c0_g1:3069	si_s680	TRINITY_DN11865_c0_g1	3058	3078	3069	-25.10	-16.80	0.669322709163347	12	5-16,3074-3063	1-4,3078-3075[UP5];17-21,3062-3058[UP3]	.....((((((((((((....&....)))))))))))).....	UUGGCAACUCAUGUUUCAAUU&UAUAGAAACAUGAGUUUAAUU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN11865_c0_g1_3069_TPlot.pdf
TRINITY_DN11866_c2_g1:113	si_s78	TRINITY_DN11866_c2_g1	103	122	113	-26.20	-17.20	0.656488549618321	13.5	6-10,117-113;12-21,112-103	1-5,122-118[UP5];11-11,x-x[BULq]	((((((((((-(((((.....&.....))))).))))))))))	AGAAGAGAGG-GGGAAUGUGU&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN11866_c2_g1_113_TPlot.pdf
TRINITY_DN11868_c0_g1:1344	si_s488	TRINITY_DN11868_c0_g1	1332	1353	1344	-18.30	-12.80	0.699453551912568	7.5	2-11,1352-1343;12-19,1341-1334	1-1,1353-1353[UP5];x-x,1342-1342[BULt];20-21,1333-1332[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	UAGUUUGUAUGUUGAAUAGAUU&UAUUUAUUUAA-AUAUAAACAA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN11868_c0_g1_1344_TPlot.pdf
TRINITY_DN11870_c0_g1:1297	si_a314	TRINITY_DN11870_c0_g1	1287	1306	1297	-27.10	-18.20	0.671586715867159	8	2-13,1305-1294;15-16,1293-1292	1-1,1306-1306[UP5];14-14,x-x[BULq];17-21,1291-1287[UP3]	.....((-((((((((((((.&.)))))))))))).)).....	GUCUUUC-UGGAUGAAUCCAU&UUGGAUUUAUCCAUGAUUUUU	3	0.999992202311982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN11870_c0_g1_1297_TPlot.pdf
TRINITY_DN11876_c0_g1:1130	si_a880	TRINITY_DN11876_c0_g1	1118	1139	1130	-27.80	-22.80	0.820143884892086	4.5	3-18,1137-1122;19-21,1120-1118	1-2,1139-1138[UP5];x-x,1121-1121[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	UGCAUAUAUUGAUUGCAACUCC&UUAGUUGCAAUCAAUAUA-GUA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN11876_c0_g1_1130_TPlot.pdf
TRINITY_DN11876_c0_g1:1360	si_a134	TRINITY_DN11876_c0_g1	1349	1370	1360	-28.20	-18.56	0.658156028368794	12	1-8,1370-1363;15-21,1355-1349	9-14,1362-1356[AILt]	(((((((.......((((((((&))))))))-......)))))))	ACAACGAAACCACGACUAUUGC&GCAAUAGU-AAUUAAUCGUUGU	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN11876_c0_g1_1360_TPlot.pdf
TRINITY_DN11876_c0_g1:1814	si_a320	TRINITY_DN11876_c0_g1	1803	1826	1814	-24.40	-16.20	0.663934426229508	10.5	2-6,1825-1821;7-20,1817-1804	1-1,1826-1826[UP5];x-x,1820-1818[BULt];21-21,1803-1803[UP3]	.((((((((((((((...(((((.&.)))))---)))))))))))))).	UGAUGAAGAAAUCGUUGCGGAUAU&UUAUCC---AUGAUUUUUUUAUUC	2	0.999946319329673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN11876_c0_g1_1814_TPlot.pdf
TRINITY_DN11876_c0_g1:2439	si_a763	TRINITY_DN11876_c0_g1	2428	2449	2439	-28.80	-19.50	0.677083333333333	6.5	1-5,2449-2445;6-17,2443-2432;19-20,2430-2429	x-x,2444-2444[BULt];18-18,2431-2431[SIL];21-21,2428-2428[UP3]	.((.((((((((((((.(((((&)))))-)))))))))))).)).	AGACUUAAUCAGAAACUCCAGA&UUUGG-GUUUUUGAUUGAUUCA	2	0.999873298078937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN11876_c0_g1_2439_TPlot.pdf
TRINITY_DN11876_c0_g1:2445	si_a758	TRINITY_DN11876_c0_g1	2433	2464	2445	-34.00	-23.20	0.682352941176471	24	1-7,2464-2458;8-10,2447-2445;11-21,2443-2433	x-x,2457-2448[BULt];x-x,2444-2444[BULt]	(((((((((((.(((..........(((((((&)))))))----------)))-)))))))))))	UAAUCAGAAACUCCAGAUACACAUUGAGGAGG&CCUCCUU----------UGG-GUUUUUGAUUG	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN11876_c0_g1_2445_TPlot.pdf
TRINITY_DN11876_c0_g1:2565	si_s79	TRINITY_DN11876_c0_g1	2554	2574	2565	-26.20	-20.00	0.763358778625954	4	2-11,2573-2564;13-21,2562-2554	1-1,2574-2574[UP5];12-12,2563-2563[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AAGAAGAAACGAAAGAAGAAU&UUUUUUCUUUCCUUUCUUCUU	4	0.99999999970464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11876_c0_g1_2565_TPlot.pdf
TRINITY_DN11877_c0_g1:42	si_a25	TRINITY_DN11877_c0_g1	28	51	42	-26.50	-17.30	0.652830188679245	7	1-15,51-37;16-20,33-29	x-x,36-34[BULt];21-21,28-28[UP3]	.(((((...(((((((((((((((&)))))))))))))))---))))).	AGUCUUCUGAGAAUUAAAGAUAGA&UUUAUUUUUAGUUCU---AAGACC	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN11877_c0_g1_42_TPlot.pdf
TRINITY_DN11877_c0_g1:49	si_a18	TRINITY_DN11877_c0_g1	38	62	49	-26.30	-17.16	0.652471482889734	15	2-5,61-58;8-21,51-38	1-1,62-62[UP5];6-7,57-52[AILt]	((((((((((((((......((((.&.))))----..))))))))))))))	GAAUUAAAGAUAGAGUUUGUGGCUG&AAGCC----UAUUUAUUUUUAGUUC	4	0.999999829576798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN11877_c0_g1_49_TPlot.pdf
TRINITY_DN11877_c0_g1:638	si_a163	TRINITY_DN11877_c0_g1	629	647	638	-37.60	-25.40	0.675531914893617	5.5	1-12,647-636;16-21,634-629	13-15,635-635[AILq]	((((((.--((((((((((((&))))))))))))...))))))	GGACGGC--GAUAGAUUGGCC&GGUCAAUCUAUUCACCCGUCU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a163_TRINITY_DN11877_c0_g1_638_TPlot.pdf
TRINITY_DN11877_c0_g1:701	si_a487	TRINITY_DN11877_c0_g1	690	711	701	-24.80	-16.40	0.661290322580645	10.5	1-7,711-705;10-21,701-690	8-9,704-702[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	AAGGACGGCAUAGAGUUGUGUA&UAUAUAG-AAUAUGUCGUUUUU	2	0.992673290620823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN11877_c0_g1_701_TPlot.pdf
TRINITY_DN11877_c0_g1:705	si_a486	TRINITY_DN11877_c0_g1	691	714	705	-24.90	-16.50	0.662650602409639	12.5	1-7,714-708;9-11,706-704;12-21,700-691	8-8,707-707[SIL];x-x,703-701[BULt]	((((((((((...(((.(((((((&))))))).)))---))))))))))	AGGACGGCAUAGAGUUGUGUAUGA&UUAUAUAGAAU---AUGUCGUUUU	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN11877_c0_g1_705_TPlot.pdf
TRINITY_DN11877_c0_g1:847	si_a768	TRINITY_DN11877_c0_g1	836	857	847	-28.40	-18.70	0.658450704225352	8	1-7,857-851;8-10,849-847;13-21,844-836	x-x,850-850[BULt];11-12,846-845[SIL]	(((((((((..(((.(((((((&)))))))-)))..)))))))))	GGAGUUGGAAAAGUGCAAAAAC&GUUUUUG-AUUGAUUCAACUCU	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN11877_c0_g1_847_TPlot.pdf
TRINITY_DN11884_c0_g1:1467	si_s537	TRINITY_DN11884_c0_g1	1455	1476	1467	-26.40	-17.20	0.651515151515151	10	2-10,1475-1467;11-15,1465-1461	1-1,1476-1476[UP5];x-x,1466-1466[BULt];16-21,1460-1455[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	CAGGACGAUCGAGAUCAGAAAA&AUUUUUGAUC-CGAUCAAAAUA	2	0.997009610118473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN11884_c0_g1_1467_TPlot.pdf
TRINITY_DN11884_c0_g1:1589	si_a501	TRINITY_DN11884_c0_g1	1575	1597	1589	-33.50	-21.90	0.653731343283582	9.5	1-3,1597-1595;6-17,1593-1582;18-21,1578-1575	4-5,1594-1594[AILq];x-x,1581-1579[BULt]	((((...((((((((((((.-(((&)))..))))))))))))---))))	UUCCCGGAAGGGAGGCGAGU-ACG&CGUUUUUCGUCUUCCUU---GGAA	2	0.999999983542003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN11884_c0_g1_1589_TPlot.pdf
TRINITY_DN11884_c0_g1:931	si_s614	TRINITY_DN11884_c0_g1	929	940	931	-28.30	-19.80	0.699646643109541	3	11-21,939-929	10-10,940-940[SIL]	(((((((((((.&.)))))))))))	AGAUCGCUUGGG&UUUUUUAAAUCC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN11884_c0_g1_931_TPlot.pdf
TRINITY_DN11885_c0_g1:5786	si_s68	TRINITY_DN11885_c0_g1	5775	5794	5786	-23.10	-17.60	0.761904761904762	5	1-9,5794-5786;12-21,5784-5775	10-11,5785-5785[AILq]	((((((((((.-(((((((((&)))))))))..))))))))))	AAAGAAAAAAC-UGGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN11885_c0_g1_5786_TPlot.pdf
TRINITY_DN11885_c0_g2:414	si_s485	TRINITY_DN11885_c0_g2	404	423	414	-18.10	-12.90	0.712707182320442	4.5	1-12,423-412;15-20,410-405	13-14,411-411[AILq];21-21,404-404[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	AUUGUAUG-AAAUAAAUGUAG&CUAUAUUUAUUUAAAUAUAAA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN11885_c0_g2_414_TPlot.pdf
TRINITY_DN1188_c0_g1:564	si_a504	TRINITY_DN1188_c0_g1	550	573	564	-32.90	-22.10	0.671732522796353	7	1-13,573-561;14-17,559-556;18-21,553-550	x-x,560-560[BULt];x-x,555-554[BULt]	((((..((((.(((((((((((((&)))))))))))))-))))--))))	ACGUUUUCCAUGGGGAGAUGGAAA&UUUUCGUCUUCCU-UGGA--AUGU	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN1188_c0_g1_564_TPlot.pdf
TRINITY_DN1188_c0_g1:567	si_a556	TRINITY_DN1188_c0_g1	556	576	567	-33.40	-23.50	0.703592814371258	13.5	6-19,571-558	1-5,576-572[UP5];20-21,557-556[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCCAUGGGGAGAUGGAAACAA&AUUUCUUUAUCUCCCCGUGAA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN1188_c0_g1_567_TPlot.pdf
TRINITY_DN1188_c0_g1:568	si_a555	TRINITY_DN1188_c0_g1	557	577	568	-33.70	-23.50	0.697329376854599	14.5	7-20,571-558	1-6,577-572[UP5];21-21,557-557[UP3]	.((((((((((((((......&......)))))))))))))).	CCAUGGGGAGAUGGAAACAAA&UAUUUCUUUAUCUCCCCGUGA	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN1188_c0_g1_568_TPlot.pdf
TRINITY_DN11894_c0_g1:1100	si_s79	TRINITY_DN11894_c0_g1	1089	1109	1100	-26.20	-19.20	0.732824427480916	8.5	1-3,1109-1107;5-9,1105-1101;11-21,1099-1089	4-4,1106-1106[SIL];10-10,1100-1100[SIL]	(((((((((((.(((((.(((&))).))))).)))))))))))	GAGAAGGAGGGCGAGAACGGA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11894_c0_g1_1100_TPlot.pdf
TRINITY_DN11894_c0_g1:1110	si_s86	TRINITY_DN11894_c0_g1	1098	1119	1110	-32.90	-23.80	0.723404255319149	7	2-13,1118-1107;14-16,1104-1102;18-21,1101-1098	1-1,1119-1119[UP5];x-x,1106-1105[BULt];17-17,x-x[BULq]	((((-(((..((((((((((((.&.))))))))))))--))).))))	GGCG-AGAACGGAGGAGAGGAAU&UUUCCUUUCUUCU--UCUUCGCU	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN11894_c0_g1_1110_TPlot.pdf
TRINITY_DN11894_c0_g1:1111	si_s85	TRINITY_DN11894_c0_g1	1099	1120	1111	-33.80	-22.50	0.665680473372781	8.5	3-14,1118-1107;15-17,1104-1102;19-21,1101-1099	1-2,1120-1119[UP5];x-x,1106-1105[BULt];18-18,x-x[BULq]	(((-(((..((((((((((((..&..))))))))))))--))).)))	GCG-AGAACGGAGGAGAGGAAUA&CUUUCCUUUCUUCU--UCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN11894_c0_g1_1111_TPlot.pdf
TRINITY_DN11897_c0_g1:345	si_s815	TRINITY_DN11897_c0_g1	330	354	345	-25.00	-16.28	0.6512	14	2-11,353-344;13-20,338-331	1-1,354-354[UP5];12-12,343-339[AILt];21-21,330-330[UP3]	.((((((((.....((((((((((.&.))))))))))----.)))))))).	AUCGUUGUUCAACUAGAGAAGGUAC&UUACCUUUUCU----UAAUAAUGAA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN11897_c0_g1_345_TPlot.pdf
TRINITY_DN11897_c0_g1:656	si_s69	TRINITY_DN11897_c0_g1	645	676	656	-23.40	-15.70	0.670940170940171	24.5	1-9,676-668;10-21,656-645	x-x,667-657[BULt]	((((((((((((...........(((((((((&)))))))))-----------))))))))))))	GAGGGGAAAAAACAGACCCAGGGGUAGAAGUU&AACUUCUAU-----------UUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN11897_c0_g1_656_TPlot.pdf
TRINITY_DN11899_c1_g2:6536	si_a73	TRINITY_DN11899_c1_g2	6525	6545	6536	-21.90	-14.80	0.675799086757991	5	2-12,6544-6534;14-15,6532-6531;17-21,6529-6525	1-1,6545-6545[UP5];13-13,6533-6533[SIL];16-16,6530-6530[SIL]	(((((.((.(((((((((((.&.))))))))))).)).)))))	AGUGAAGACGAACAAUUUGAU&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999566753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN11899_c1_g2_6536_TPlot.pdf
TRINITY_DN11899_c1_g2:6537	si_a72	TRINITY_DN11899_c1_g2	6523	6546	6537	-21.90	-14.80	0.675799086757991	9	3-13,6544-6534;14-19,6530-6525	1-2,6546-6545[UP5];x-x,6533-6531[BULt];20-21,6524-6523[UP3]	..((((((...(((((((((((..&..)))))))))))---))))))..	GGAGUGAAGACGAACAAUUUGAUC&UUUCAAAUUGUUU---UUCAUUAU	4	0.999999999827311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN11899_c1_g2_6537_TPlot.pdf
TRINITY_DN1189_c0_g1:1470	si_s14	TRINITY_DN1189_c0_g1	1458	1479	1470	-25.30	-16.70	0.660079051383399	6	1-10,1479-1470;11-19,1468-1460	x-x,1469-1469[BULt];20-21,1459-1458[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AAGAUCAAUGUAAGUAAUAAUG&UAUUAUUACU-AUAUUGAUUGC	2	0.971901658198758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN1189_c0_g1_1470_TPlot.pdf
TRINITY_DN1189_c0_g1:1471	si_s13	TRINITY_DN1189_c0_g1	1459	1480	1471	-22.90	-17.10	0.746724890829694	6	2-11,1479-1470;12-20,1468-1460	1-1,1480-1480[UP5];x-x,1469-1469[BULt];21-21,1459-1459[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AGAUCAAUGUAAGUAAUAAUGG&UUAUUAUUACU-AUAUUGAUUG	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN1189_c0_g1_1471_TPlot.pdf
TRINITY_DN1189_c0_g1:1472	si_s12	TRINITY_DN1189_c0_g1	1460	1481	1472	-22.80	-17.60	0.771929824561404	6	2-12,1480-1470;13-21,1468-1460	1-1,1481-1481[UP5];x-x,1469-1469[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	GAUCAAUGUAAGUAAUAAUGGA&CUUAUUAUUACU-AUAUUGAUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN1189_c0_g1_1472_TPlot.pdf
TRINITY_DN1189_c0_g1:1473	si_s11	TRINITY_DN1189_c0_g1	1461	1482	1473	-23.60	-16.50	0.699152542372881	6.5	3-13,1480-1470;14-21,1468-1461	1-2,1482-1481[UP5];x-x,1469-1469[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AUCAAUGUAAGUAAUAAUGGAG&ACUUAUUAUUACU-AUAUUGAU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN1189_c0_g1_1473_TPlot.pdf
TRINITY_DN118_c0_g1:119	si_s710	TRINITY_DN118_c0_g1	108	128	119	-32.00	-21.60	0.675	6	1-11,128-118;13-20,116-109	12-12,117-117[SIL];21-21,108-108[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	GAUUUUUCUGUGUUCAUUGAU&AUUAGUGAACAGGGAAAGAUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s710_TRINITY_DN118_c0_g1_119_TPlot.pdf
TRINITY_DN118_c0_g1:215	si_a764	TRINITY_DN118_c0_g1	203	226	215	-28.90	-19.10	0.660899653979239	9.5	2-8,225-219;10-17,215-208;18-21,206-203	1-1,226-226[UP5];9-9,218-216[AILt];x-x,207-207[BULt]	((((.((((((((...(((((((.&.)))))))--.))))))))-))))	UUGAUGUCAAUCACAUAGACCCAC&UUGGGUUU--UUGAUUGAU-UCAA	2	0.999985288146911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN118_c0_g1_215_TPlot.pdf
TRINITY_DN118_c0_g1:682	si_a459	TRINITY_DN118_c0_g1	671	691	682	-23.20	-15.70	0.676724137931034	7.5	2-6,690-686;8-19,684-673	1-1,691-691[UP5];7-7,685-685[SIL];20-21,672-671[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CAGCAUAUUAUGUGGAACAAG&GUUGUUAUAUAUAAUAUGUAA	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN118_c0_g1_682_TPlot.pdf
TRINITY_DN118_c0_g1:729	si_a570	TRINITY_DN118_c0_g1	716	740	729	-31.90	-21.90	0.686520376175549	8	1-6,740-735;7-16,732-723;17-20,720-717	x-x,734-733[BULt];x-x,722-721[BULt];21-21,716-716[UP3]	.((((..((((((((((..((((((&))))))--))))))))))--)))).	AUAUAAUGACAUACGAUUAUCACGG&CCGUGA--AUCGUAUGUU--UGUAA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN118_c0_g1_729_TPlot.pdf
TRINITY_DN118_c0_g1:966	si_a760	TRINITY_DN118_c0_g1	948	975	966	-31.10	-20.90	0.672025723472669	12.5	1-13,975-963;14-19,955-950	x-x,962-956[BULt];20-21,949-948[UP3]	..((((((.......(((((((((((((&)))))))))))))-------))))))..	ACCAGUUACCGGACCGGGACCCAAAGGA&UCCUUUGGGUUUU-------UGAUUGAU	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN118_c0_g1_966_TPlot.pdf
TRINITY_DN11903_c0_g1:931	si_a313	TRINITY_DN11903_c0_g1	920	940	931	-28.70	-18.90	0.658536585365854	7.5	1-6,940-935;8-15,933-926;18-21,923-920	7-7,934-934[SIL];16-17,925-924[SIL]	((((..((((((((.((((((&)))))).))))))))..))))	GAAGCAGUGGAUGACUCCGAG&CUUGGAUUUAUCCAUGAUUUU	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN11903_c0_g1_931_TPlot.pdf
TRINITY_DN11903_c0_g1:975	si_a229	TRINITY_DN11903_c0_g1	964	984	975	-27.60	-18.40	0.666666666666667	6.5	1-2,984-983;4-11,981-974;13-20,972-965	3-3,982-982[SIL];12-12,973-973[SIL];21-21,964-964[UP3]	.((((((((.((((((((.((&)).)))))))).)))))))).	UGAGUUGAUAAUAGAAAUUUG&CAUGUUUCUAUAAUCAAUUCG	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN11903_c0_g1_975_TPlot.pdf
TRINITY_DN11903_c0_g1:976	si_a228	TRINITY_DN11903_c0_g1	965	985	976	-27.10	-17.90	0.660516605166052	5	1-3,985-983;5-12,981-974;14-21,972-965	4-4,982-982[SIL];13-13,973-973[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	GAGUUGAUAAUAGAAAUUUGG&UCAUGUUUCUAUAAUCAAUUC	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN11903_c0_g1_976_TPlot.pdf
TRINITY_DN11903_c0_g1:977	si_a227	TRINITY_DN11903_c0_g1	966	986	977	-26.80	-18.30	0.682835820895522	5.5	1-4,986-983;6-13,981-974;15-21,972-966	5-5,982-982[SIL];14-14,973-973[SIL]	(((((((.((((((((.((((&)))).)))))))).)))))))	AGUUGAUAAUAGAAAUUUGGG&CUCAUGUUUCUAUAAUCAAUU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN11903_c0_g1_977_TPlot.pdf
TRINITY_DN11906_c0_g1:1339	si_a75	TRINITY_DN11906_c0_g1	1328	1348	1339	-21.30	-13.88	0.651643192488263	9	1-4,1348-1345;8-20,1341-1329	5-7,1344-1342[SIL];21-21,1328-1328[UP3]	.(((((((((((((...((((&))))...))))))))))))).	CUGAUAGUGAAGAAAUCUUUG&CAAAUUGUUUUUCAUUAUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN11906_c0_g1_1339_TPlot.pdf
TRINITY_DN11906_c0_g1:1345	si_a318	TRINITY_DN11906_c0_g1	1334	1355	1345	-22.50	-15.50	0.688888888888889	11.5	4-9,1352-1347;11-21,1344-1334	1-3,1355-1353[UP5];10-10,1346-1345[AILt]	(((((((((((..((((((...&...))))))-.)))))))))))	GUGAAGAAAUCUUUGGAUGUGG&AUUUAUCCA-UGAUUUUUUUAU	3	0.999999996785422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN11906_c0_g1_1345_TPlot.pdf
TRINITY_DN11906_c0_g1:1635	si_a463	TRINITY_DN11906_c0_g1	1624	1644	1635	-19.70	-12.90	0.654822335025381	7	1-5,1644-1640;7-17,1638-1628	6-6,1639-1639[SIL];18-21,1627-1624[UP3]	....(((((((((((.(((((&))))).)))))))))))....	CUGUUUACAUAUUGUUUAUAA&UUAUAUAUAAUAUGUAAUUAU	4	0.999966384966176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN11906_c0_g1_1635_TPlot.pdf
TRINITY_DN1190_c0_g1:1450	si_s88	TRINITY_DN1190_c0_g1	1439	1459	1450	-34.80	-24.50	0.704022988505747	8	4-19,1456-1441	1-3,1459-1457[UP5];20-21,1440-1439[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCAGCGAAGAAGAAGAAGAUG&UCCUUUCUUCUUCUUCGCUUC	2	0.999961159904183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1190_c0_g1_1450_TPlot.pdf
TRINITY_DN1190_c0_g1:1453	si_s85	TRINITY_DN1190_c0_g1	1442	1462	1453	-33.80	-23.30	0.689349112426036	12	7-21,1456-1442	1-6,1462-1457[UP5]	(((((((((((((((......&......)))))))))))))))	GCGAAGAAGAAGAAGAUGAUG&CUUUCCUUUCUUCUUCUUCGC	4	0.999999999917865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1190_c0_g1_1453_TPlot.pdf
TRINITY_DN1190_c0_g1:2597	si_s691	TRINITY_DN1190_c0_g1	2583	2606	2597	-26.20	-18.24	0.69618320610687	11	1-10,2606-2597;12-19,2592-2585	11-11,2596-2593[AILt];20-21,2584-2583[UP3]	..((((((((....((((((((((&))))))))))---.))))))))..	UCAAAUCGACGAAGAAUUAGACUC&GAGUUUAAUU---AGUCGAUUUAU	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN1190_c0_g1_2597_TPlot.pdf
TRINITY_DN1190_c0_g1:2599	si_s689	TRINITY_DN1190_c0_g1	2585	2608	2599	-26.50	-18.14	0.684528301886792	11	3-12,2606-2597;14-21,2592-2585	1-2,2608-2607[UP5];13-13,2596-2593[AILt]	((((((((....((((((((((..&..))))))))))---.))))))))	AAAUCGACGAAGAAUUAGACUCGA&AUGAGUUUAAUU---AGUCGAUUU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN1190_c0_g1_2599_TPlot.pdf
TRINITY_DN1190_c0_g1:2812	si_a407	TRINITY_DN1190_c0_g1	2801	2821	2812	-19.80	-13.00	0.656565656565657	7.5	1-12,2821-2810;15-17,2807-2805	13-14,2809-2808[SIL];18-21,2804-2801[UP3]	....(((..((((((((((((&))))))))))))..)))....	GAAAAAAGUUGAACAAAACAG&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1190_c0_g1_2812_TPlot.pdf
TRINITY_DN1190_c0_g1:2813	si_a406	TRINITY_DN1190_c0_g1	2802	2822	2813	-19.80	-13.00	0.656565656565657	8	2-13,2821-2810;16-18,2807-2805	1-1,2822-2822[UP5];14-15,2809-2808[SIL];19-21,2804-2802[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	AAAAAAGUUGAACAAAACAGG&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1190_c0_g1_2813_TPlot.pdf
TRINITY_DN1190_c0_g1:2949	si_a784	TRINITY_DN1190_c0_g1	2938	2959	2949	-24.70	-17.90	0.724696356275304	9.5	3-9,2957-2951;10-21,2949-2938	1-2,2959-2958[UP5];x-x,2950-2950[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GAGGUAGAAGAGCUAGAGGAAG&ACUCUUCUA-UUUUUCUAUUUU	4	0.999995820903227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1190_c0_g1_2949_TPlot.pdf
TRINITY_DN11912_c0_g1:2082	si_a634	TRINITY_DN11912_c0_g1	2071	2091	2082	-26.40	-17.80	0.674242424242424	7.5	1-8,2091-2084;10-17,2082-2075;19-19,2073-2073	9-9,2083-2083[SIL];18-18,2074-2074[SIL];20-21,2072-2071[UP3]	..(.((((((((.((((((((&)))))))).)))))))).)..	CAAGUCAAAGAAUUCGGCAUG&UAUGUCGAUUUUUUUGAGUAA	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN11912_c0_g1_2082_TPlot.pdf
TRINITY_DN11912_c0_g1:2083	si_a633	TRINITY_DN11912_c0_g1	2072	2092	2083	-26.40	-19.60	0.742424242424243	6.5	1-9,2092-2084;11-18,2082-2075;20-20,2073-2073	10-10,2083-2083[SIL];19-19,2074-2074[SIL];21-21,2072-2072[UP3]	.(.((((((((.(((((((((&))))))))).)))))))).).	AAGUCAAAGAAUUCGGCAUGA&UUAUGUCGAUUUUUUUGAGUA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN11912_c0_g1_2083_TPlot.pdf
TRINITY_DN11912_c0_g1:2355	si_a545	TRINITY_DN11912_c0_g1	2344	2364	2355	-28.10	-19.70	0.701067615658363	7	1-6,2364-2359;8-10,2357-2355;12-19,2353-2346	7-7,2358-2358[SIL];11-11,2354-2354[SIL];20-21,2345-2344[UP3]	..((((((((.(((.((((((&)))))).))).))))))))..	CAGAAGAAGUUGAUAGAACCG&CGGUUCAAUCUAUUUCUUUAU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN11912_c0_g1_2355_TPlot.pdf
TRINITY_DN11912_c0_g1:2356	si_a544	TRINITY_DN11912_c0_g1	2345	2365	2356	-28.90	-19.90	0.688581314878893	6.5	1-7,2365-2359;9-11,2357-2355;13-20,2353-2346	8-8,2358-2358[SIL];12-12,2354-2354[SIL];21-21,2345-2345[UP3]	.((((((((.(((.(((((((&))))))).))).)))))))).	AGAAGAAGUUGAUAGAACCGG&UCGGUUCAAUCUAUUUCUUUA	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN11912_c0_g1_2356_TPlot.pdf
TRINITY_DN11912_c0_g1:2357	si_a543	TRINITY_DN11912_c0_g1	2346	2366	2357	-28.70	-19.40	0.67595818815331	6	2-8,2365-2359;10-12,2357-2355;14-21,2353-2346	1-1,2366-2366[UP5];9-9,2358-2358[SIL];13-13,2354-2354[SIL]	((((((((.(((.(((((((.&.))))))).))).))))))))	GAAGAAGUUGAUAGAACCGGC&AUCGGUUCAAUCUAUUUCUUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN11912_c0_g1_2357_TPlot.pdf
TRINITY_DN11914_c0_g1:15	si_s898	TRINITY_DN11914_c0_g1	4	24	15	-30.70	-22.90	0.745928338762215	5.5	2-17,23-8	1-1,24-24[UP5];18-21,7-4[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAACAAGUUGAAGAGAAAGCA&GGCUUUCUCUUCAAUUUCAAU	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN11914_c0_g1_15_TPlot.pdf
TRINITY_DN11915_c0_g1:1712	si_s104	TRINITY_DN11915_c0_g1	1701	1723	1712	-32.70	-21.88	0.669113149847095	13	1-6,1723-1718;9-19,1713-1703	7-8,1717-1714[AILt];20-21,1702-1701[UP3]	..(((((((((((....((((((&))))))--..)))))))))))..	AGCUAUUUUCCAGGCGGCGGGGC&GCUUCG--GAUUGGAAAAUAGAA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN11915_c0_g1_1712_TPlot.pdf
TRINITY_DN1191_c0_g1:1333	si_a69	TRINITY_DN1191_c0_g1	1322	1347	1333	-24.00	-15.60	0.65	14	1-7,1347-1341;8-21,1335-1322	x-x,1340-1336[BULt]	((((((((((((((.....(((((((&)))))))-----))))))))))))))	GUGGAAGAUAAUUUUUGAGGAAGGGA&UUCUUUC-----AAAUUGUUUUUCAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1191_c0_g1_1333_TPlot.pdf
TRINITY_DN11920_c0_g1:2570	si_a301	TRINITY_DN11920_c0_g1	2556	2579	2570	-27.80	-18.20	0.654676258992806	16.5	6-11,2574-2569;12-20,2565-2557	1-5,2579-2575[UP5];x-x,2568-2566[BULt];21-21,2556-2556[UP3]	.(((((((((...((((((.....&.....))))))---))))))))).	CAAUCCAGGCUGGGAAUCUGGCUC&AAAAAAGAUUC---GCUUGGAUUU	2	0.999718989854178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN11920_c0_g1_2570_TPlot.pdf
TRINITY_DN11921_c0_g1:230	si_s73	TRINITY_DN11921_c0_g1	219	239	230	-24.00	-19.80	0.825	7	1-2,239-238;5-21,235-219	3-4,237-236[SIL]	(((((((((((((((((..((&))..)))))))))))))))))	AAAGGGAGGAGGAAAAAGUGA&UCUAUUUUUUUUCUUUCCUUU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11921_c0_g1_230_TPlot.pdf
TRINITY_DN11922_c0_g2:567	si_a404	TRINITY_DN11922_c0_g2	556	576	567	-21.70	-14.90	0.686635944700461	11.5	6-20,571-557	1-5,576-572[UP5];21-21,556-556[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAUGUAAACAGAACCGCCA&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999823709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN11922_c0_g2_567_TPlot.pdf
TRINITY_DN11922_c0_g3:510	si_a410	TRINITY_DN11922_c0_g3	499	519	510	-17.80	-12.00	0.674157303370786	9	1-14,519-506	15-21,505-499[UP3]	.......((((((((((((((&)))))))))))))).......	UCCAAAAAAAUGUAAACAGAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999898713894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN11922_c0_g3_510_TPlot.pdf
TRINITY_DN11924_c1_g1:24	si_a406	TRINITY_DN11924_c1_g1	13	34	24	-19.80	-15.00	0.757575757575758	6.5	1-9,34-26;10-19,24-15	x-x,25-25[BULt];20-21,14-13[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AAUGAAUAUAAAUCAAAACGGU&AUUGUUUUG-UUUAUAUUUAAA	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN11924_c1_g1_24_TPlot.pdf
TRINITY_DN11926_c0_g1:429	si_s76	TRINITY_DN11926_c0_g1	416	438	429	-23.60	-18.80	0.796610169491525	8	1-15,438-424;16-21,421-416	x-x,423-422[BULt]	((((((..(((((((((((((((&)))))))))))))))--))))))	AAGAAACUGGAGAGGGAGAGAGU&AUUUUUUUUCUUUCC--UUUCUU	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN11926_c0_g1_429_TPlot.pdf
TRINITY_DN11929_c0_g1:607	si_a98	TRINITY_DN11929_c0_g1	597	615	607	-26.40	-17.30	0.65530303030303	7.5	3-9,613-607;12-21,606-597	1-2,615-614[UP5];10-11,x-x[BULq]	((((((((((--(((((((..&..)))))))..))))))))))	UAUUUUGUCU--GUUACCUAC&AAAGGUAACGAAGAUAAAAUA	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN11929_c0_g1_607_TPlot.pdf
TRINITY_DN1192_c0_g1:176	si_a399	TRINITY_DN1192_c0_g1	165	185	176	-22.60	-15.60	0.690265486725664	9.5	3-16,183-170	1-2,185-184[UP5];17-21,169-165[UP3]	.....((((((((((((((..&..)))))))))))))).....	UACCUCAGAGCAAUUCUAUUA&AUAUAGAAUUGUUUUGUUUAU	4	0.999991909822843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1192_c0_g1_176_TPlot.pdf
TRINITY_DN11930_c0_g1:1751	si_s74	TRINITY_DN11930_c0_g1	1740	1760	1751	-25.00	-16.50	0.66	10.5	1-3,1760-1758;6-18,1755-1743	4-5,1757-1756[SIL];19-21,1742-1740[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UUUGGGGAGGAGAAAAUCUGG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN11930_c0_g1_1751_TPlot.pdf
TRINITY_DN11930_c0_g1:432	si_a784	TRINITY_DN11930_c0_g1	421	441	432	-24.70	-19.00	0.769230769230769	7.5	3-18,439-424	1-2,441-440[UP5];19-21,423-421[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUUGUAGAAAAAUAGAGGAUG&ACUCUUCUAUUUUUCUAUUUU	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN11930_c0_g1_432_TPlot.pdf
TRINITY_DN11931_c0_g1:1064	si_s79	TRINITY_DN11931_c0_g1	1049	1074	1064	-26.20	-17.60	0.67175572519084	8.5	1-7,1074-1068;8-14,1066-1060;15-21,1055-1049	x-x,1067-1067[BULt];x-x,1059-1056[BULt]	(((((((....(((((((.(((((((&)))))))-)))))))----)))))))	AAGAGGAGUUAAAGGAAGUGAAAGAA&UUUUUUC-UUUCCUU----UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11931_c0_g1_1064_TPlot.pdf
TRINITY_DN11931_c0_g1:516	si_a412	TRINITY_DN11931_c0_g1	505	525	516	-18.30	-13.00	0.710382513661202	4.5	1-7,525-519;9-19,517-507	8-8,518-518[SIL];20-21,506-505[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	AUUUUAUUUAAAUUUAAACAG&UUGUUUAUAUUUAAAUAAAUA	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN11931_c0_g1_516_TPlot.pdf
TRINITY_DN11936_c0_g1:3332	si_a403	TRINITY_DN11936_c0_g1	3321	3341	3332	-22.00	-14.50	0.659090909090909	11.5	3-6,3339-3336;8-20,3334-3322	1-2,3341-3340[UP5];7-7,3335-3335[SIL];21-21,3321-3321[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UGAUGUAGACGAGGGGAUUAA&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN11936_c0_g1_3332_TPlot.pdf
TRINITY_DN11936_c0_g2:241	si_a792	TRINITY_DN11936_c0_g2	230	250	241	-27.60	-18.10	0.655797101449275	9	1-9,250-242;12-12,239-239;15-21,236-230	10-11,241-240[SIL];13-14,238-237[SIL]	(((((((..(..(((((((((&)))))))))..)..)))))))	CGGAUUGAUAUUUAGAGGAGU&AUUUUUCUAUUUUCCAAUCCG	2	0.999901218111531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN11936_c0_g2_241_TPlot.pdf
TRINITY_DN11941_c0_g1:143	si_a152	TRINITY_DN11941_c0_g1	132	152	143	-29.20	-18.98	0.65	4.5	1-14,152-139;18-21,135-132	15-17,138-136[SIL]	((((...((((((((((((((&))))))))))))))...))))	UGGAGAAACCUUAAAAUAACA&UGUUGUUUUAAGGUCAAUCUA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN11941_c0_g1_143_TPlot.pdf
TRINITY_DN11947_c0_g1:1060	si_s798	TRINITY_DN11947_c0_g1	1047	1069	1060	-29.30	-19.60	0.668941979522184	8.5	1-10,1069-1060;12-17,1058-1053;18-21,1050-1047	11-11,1059-1059[SIL];x-x,1052-1051[BULt]	((((..((((((.((((((((((&)))))))))).))))))--))))	GUGGGGUGAAGAGGAGAUGCGAG&CUCGUAUUUUAUCUUCG--UUAC	2	0.990365583261362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN11947_c0_g1_1060_TPlot.pdf
TRINITY_DN11947_c0_g1:529	si_a513	TRINITY_DN11947_c0_g1	519	537	529	-39.50	-27.20	0.688607594936709	5	1-8,537-530;10-13,529-526;15-15,525-525;17-21,523-519	9-9,x-x[BULq];14-14,x-x[BULq];16-16,524-524[SIL]	(((((.(-((((-((((((((&)))))))).)))).).)))))	GUCCGGC-UACG-UCCAAGGA&UCCUUGGAAUGUAAGGCGGAC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN11947_c0_g1_529_TPlot.pdf
TRINITY_DN11949_c0_g1:476	si_s66	TRINITY_DN11949_c0_g1	465	491	476	-26.30	-20.00	0.760456273764259	14	1-7,491-485;8-20,478-466	x-x,484-479[BULt];21-21,465-465[UP3]	.(((((((((((((......(((((((&)))))))------))))))))))))).	UGGAAAGAAAUAGAUAAGGAAGUUGCU&AGCAACU------UCUAUUUUUUUUCU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN11949_c0_g1_476_TPlot.pdf
TRINITY_DN11949_c0_g1:477	si_s65	TRINITY_DN11949_c0_g1	466	492	477	-26.00	-20.40	0.784615384615385	13.5	1-8,492-485;9-21,478-466	x-x,484-479[BULt]	(((((((((((((......((((((((&))))))))------)))))))))))))	GGAAAGAAAUAGAUAAGGAAGUUGCUG&UAGCAACU------UCUAUUUUUUUUC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN11949_c0_g1_477_TPlot.pdf
TRINITY_DN11949_c0_g1:478	si_s64	TRINITY_DN11949_c0_g1	467	493	478	-24.10	-18.40	0.763485477178423	15	2-9,492-485;10-21,478-467	1-1,493-493[UP5];x-x,484-479[BULt]	((((((((((((......((((((((.&.))))))))------))))))))))))	GAAAGAAAUAGAUAAGGAAGUUGCUGC&UUAGCAACU------UCUAUUUUUUUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN11949_c0_g1_478_TPlot.pdf
TRINITY_DN11949_c0_g1:669	si_a775	TRINITY_DN11949_c0_g1	658	679	669	-27.20	-19.80	0.727941176470588	8.5	3-8,677-672;9-18,670-661	1-2,679-678[UP5];x-x,671-671[BULt];19-21,660-658[UP3]	...((((((((((.((((((..&..))))))-))))))))))...	AACUGGAAGAGUUAGAAUCAUG&AUUGAUUC-AACUCUUCUAUUU	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN11949_c0_g1_669_TPlot.pdf
TRINITY_DN11949_c0_g1:670	si_a774	TRINITY_DN11949_c0_g1	659	680	670	-29.20	-19.80	0.678082191780822	9.5	4-9,677-672;10-19,670-661	1-3,680-678[UP5];x-x,671-671[BULt];20-21,660-659[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	ACUGGAAGAGUUAGAAUCAUGU&GAUUGAUUC-AACUCUUCUAUU	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN11949_c0_g1_670_TPlot.pdf
TRINITY_DN11949_c0_g1:674	si_a771	TRINITY_DN11949_c0_g1	662	686	674	-29.40	-19.34	0.657823129251701	11.5	1-5,686-682;7-12,677-672;13-21,670-662	6-6,681-678[AILt];x-x,671-671[BULt]	(((((((((.((((((....(((((&)))))---.))))))-)))))))))	GGAAGAGUUAGAAUCAUGUUUCGAA&UUUGA---UUGAUUC-AACUCUUCU	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN11949_c0_g1_674_TPlot.pdf
TRINITY_DN11949_c0_g1:675	si_a770	TRINITY_DN11949_c0_g1	663	687	675	-28.70	-19.14	0.666898954703833	10	1-6,687-682;8-13,677-672;14-21,670-663	7-7,681-678[AILt];x-x,671-671[BULt]	((((((((.((((((....((((((&))))))---.))))))-))))))))	GAAGAGUUAGAAUCAUGUUUCGAAA&UUUUGA---UUGAUUC-AACUCUUC	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN11949_c0_g1_675_TPlot.pdf
TRINITY_DN1194_c0_g1:828	si_s388	TRINITY_DN1194_c0_g1	817	838	828	-37.80	-25.10	0.664021164021164	7.5	1-5,838-834;7-9,832-830;10-20,828-818	6-6,833-833[SIL];x-x,829-829[BULt];21-21,817-817[UP3]	.(((((((((((.(((.(((((&))))).)))-))))))))))).	AUCCUUGGGGUGUUAAAGUGGA&UCCGCCUUA-CAUUCCAAGGAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s388_TRINITY_DN1194_c0_g1_828_TPlot.pdf
TRINITY_DN11954_c0_g1:1411	si_s73	TRINITY_DN11954_c0_g1	1399	1419	1411	-24.00	-15.80	0.658333333333333	6.5	1-3,1419-1417;5-16,1416-1405;17-21,1403-1399	4-4,x-x[BULq];x-x,1404-1404[BULt]	(((((.((((((((((((-(((&))).))))))))))))-)))))	AAAGGAAGAGGAAAAAGA-GGA&UCUAUUUUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN11954_c0_g1_1411_TPlot.pdf
TRINITY_DN11954_c0_g1:4780	si_s481	TRINITY_DN11954_c0_g1	4769	4789	4780	-23.00	-16.10	0.7	7.5	1-2,4789-4788;5-20,4785-4770	3-4,4787-4786[SIL];21-21,4769-4769[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	AGUUUAGGUAAGUAUAGAUUC&GAUCCUAUAUUUAUUUAAAUA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN11954_c0_g1_4780_TPlot.pdf
TRINITY_DN11954_c0_g2:1065	si_a756	TRINITY_DN11954_c0_g2	1048	1076	1065	-33.10	-21.70	0.655589123867069	13	2-7,1075-1070;8-14,1067-1061;15-20,1054-1049	1-1,1076-1076[UP5];x-x,1069-1068[BULt];x-x,1060-1055[BULt];21-21,1048-1048[UP3]	.((((((......(((((((..((((((.&.))))))--)))))))------)))))).	UUCAAGAAAAACCGCCCAAAUUGGAGGUG&AACCUCC--UUUGGGU------UUUUGAU	2	0.999998159298689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN11954_c0_g2_1065_TPlot.pdf
TRINITY_DN11954_c0_g2:1648	si_a709	TRINITY_DN11954_c0_g2	1637	1657	1648	-26.60	-17.46	0.656390977443609	11.5	3-9,1655-1649;14-20,1644-1638	1-2,1657-1656[UP5];10-13,1648-1645[SIL];21-21,1637-1637[UP3]	.(((((((....(((((((..&..)))))))....))))))).	AGACGAUUUUAGUGGAAUGCA&UACAUUCCAAAAUAAUCGUUA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN11954_c0_g2_1648_TPlot.pdf
TRINITY_DN11954_c0_g2:2161	si_a892	TRINITY_DN11954_c0_g2	2150	2170	2161	-21.30	-14.60	0.685446009389671	6.5	4-21,2167-2150	1-3,2170-2168[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUUAUUUAUUAUUAUUAUUAU&AAUAUAGUAAUAAUAAGUAAU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN11954_c0_g2_2161_TPlot.pdf
TRINITY_DN11954_c0_g2:2537	si_a711	TRINITY_DN11954_c0_g2	2526	2545	2537	-27.90	-18.50	0.663082437275986	6	2-8,2544-2538;11-21,2536-2526	1-1,2545-2545[UP5];9-10,2537-2537[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	AGUAAUGGUUAG-UUGGAAUU&CAUUCCAAAAUAAUCGUUACU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN11954_c0_g2_2537_TPlot.pdf
TRINITY_DN11955_c0_g3:696	si_s3	TRINITY_DN11955_c0_g3	685	705	696	-21.20	-15.60	0.735849056603774	7	1-15,705-691;18-20,688-686	16-17,690-689[SIL];21-21,685-685[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	UGUGUGAGUAGGUAAUGUAGA&UUUAUAUUACUUAUUAUUACU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN11955_c0_g3_696_TPlot.pdf
TRINITY_DN11956_c0_g1:2565	si_s796	TRINITY_DN11956_c0_g1	2553	2575	2565	-30.30	-19.90	0.656765676567657	9.5	2-3,2574-2573;4-12,2571-2563;15-21,2559-2553	1-1,2575-2575[UP5];x-x,2572-2572[BULt];13-14,2562-2560[AILt]	(((((((...(((((((((.((.&.))-)))))))))-..)))))))	AGCGAAGCUGGAAAUGCGACGCA&AGC-UCGUAUUUU-AUCUUCGUU	3	0.999999891132899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN11956_c0_g1_2565_TPlot.pdf
TRINITY_DN11956_c0_g1:2611	si_a501	TRINITY_DN11956_c0_g1	2591	2620	2611	-33.50	-22.50	0.671641791044776	16.5	1-13,2620-2608;14-19,2598-2593	x-x,2607-2599[BULt];20-21,2592-2591[UP3]	..((((((.........(((((((((((((&)))))))))))))---------))))))..	UGCCGGGGCUCCCGCCCGAGACGGAGGGCG&CGUUUUUCGUCUU---------CCUUGGAA	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN11956_c0_g1_2611_TPlot.pdf
TRINITY_DN11956_c0_g1:3132	si_s335	TRINITY_DN11956_c0_g1	3121	3141	3132	-37.40	-25.50	0.681818181818182	8.5	2-3,3140-3139;5-7,3137-3135;9-20,3133-3122	1-1,3141-3141[UP5];4-4,3138-3138[SIL];8-8,3134-3134[SIL];21-21,3121-3121[UP3]	.((((((((((((.(((.((.&.)).))).)))))))))))).	ACUCUCCGUGGAUGGUGCGUC&AACAUACGAUUCACGGGGAGA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s335_TRINITY_DN11956_c0_g1_3132_TPlot.pdf
TRINITY_DN11956_c0_g1:3528	si_s798	TRINITY_DN11956_c0_g1	3517	3536	3528	-29.30	-20.90	0.713310580204778	8	1-4,3536-3533;6-10,3532-3528;12-21,3526-3517	5-5,x-x[BULq];11-11,3527-3527[SIL]	((((((((((.(((((-((((&)))).))))).))))))))))	GUGAUGAAGACGGAGU-CGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN11956_c0_g1_3528_TPlot.pdf
TRINITY_DN11956_c0_g1:3566	si_s91	TRINITY_DN11956_c0_g1	3555	3575	3566	-34.70	-24.20	0.697406340057637	7	1-12,3575-3564;14-19,3562-3557	13-13,3563-3563[SIL];20-21,3556-3555[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GACGGAGCUGAGGAGGAGAAG&UUUCUUCUUCUUCGCUUCGGA	3	0.999999681681481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN11956_c0_g1_3566_TPlot.pdf
TRINITY_DN11956_c0_g1:3567	si_s90	TRINITY_DN11956_c0_g1	3556	3576	3567	-35.30	-27.60	0.781869688385269	6	1-13,3576-3564;15-20,3562-3557	14-14,3563-3563[SIL];21-21,3556-3556[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	ACGGAGCUGAGGAGGAGAAGG&CUUUCUUCUUCUUCGCUUCGG	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN11956_c0_g1_3567_TPlot.pdf
TRINITY_DN11956_c0_g1:3568	si_s89	TRINITY_DN11956_c0_g1	3557	3577	3568	-35.30	-30.40	0.861189801699717	5	1-14,3577-3564;16-21,3562-3557	15-15,3563-3563[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	CGGAGCUGAGGAGGAGAAGGG&CCUUUCUUCUUCUUCGCUUCG	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN11956_c0_g1_3568_TPlot.pdf
TRINITY_DN11956_c0_g1:3572	si_s85	TRINITY_DN11956_c0_g1	3561	3581	3572	-33.80	-25.60	0.757396449704142	6	2-18,3580-3564;20-21,3562-3561	1-1,3581-3581[UP5];19-19,3563-3563[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GCUGAGGAGGAGAAGGGGAAU&CUUUCCUUUCUUCUUCUUCGC	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN11956_c0_g1_3572_TPlot.pdf
TRINITY_DN11956_c0_g1:3573	si_s84	TRINITY_DN11956_c0_g1	3562	3583	3573	-32.30	-22.90	0.708978328173375	7.5	1-2,3583-3582;3-19,3580-3564	x-x,3581-3581[BULt];20-21,3563-3562[UP3]	..(((((((((((((((((.((&))-)))))))))))))))))..	CUGAGGAGGAGAAGGGGAAUGA&UC-UUUCCUUUCUUCUUCUUCG	4	0.999999999001661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN11956_c0_g1_3573_TPlot.pdf
TRINITY_DN11956_c0_g1:3576	si_s81	TRINITY_DN11956_c0_g1	3565	3586	3576	-28.90	-21.90	0.757785467128028	10	4-5,3583-3582;6-21,3580-3565	1-3,3586-3584[UP5];x-x,3581-3581[BULt]	((((((((((((((((.((...&...))-))))))))))))))))	AGGAGGAGAAGGGGAAUGACAU&UUUUC-UUUCCUUUCUUCUUCU	3	0.999999891132899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN11956_c0_g1_3576_TPlot.pdf
TRINITY_DN11956_c0_g1:3578	si_a496	TRINITY_DN11956_c0_g1	3565	3587	3578	-32.40	-21.80	0.67283950617284	7.5	1-13,3587-3575;15-21,3571-3565	14-14,3574-3572[AILt]	(((((((...(((((((((((((&)))))))))))))--.)))))))	AGGAGGAGAAGGGGAAUGACAUA&UAUGUCGUUUUUC--GUCUUCCU	4	0.999999999473538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN11956_c0_g1_3578_TPlot.pdf
TRINITY_DN11956_c0_g1:3664	si_s82	TRINITY_DN11956_c0_g1	3652	3674	3664	-28.90	-19.70	0.681660899653979	9	3-9,3672-3666;10-15,3664-3659;16-21,3657-3652	1-2,3674-3673[UP5];x-x,3665-3665[BULt];x-x,3658-3658[BULt]	((((((.((((((.(((((((..&..)))))))-))))))-))))))	AAGAAGAAAGAAGCGGAGAGGCA&UUUCUUUCC-UUUCUU-CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN11956_c0_g1_3664_TPlot.pdf
TRINITY_DN1195_c0_g1:450	si_a21	TRINITY_DN1195_c0_g1	439	459	450	-24.30	-17.40	0.716049382716049	10.5	1-7,459-453;10-19,450-441	8-9,452-451[SIL];20-21,440-439[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	CCAGAACUGAAGCAGAGUGGG&CCUAUUUAUUUUUAGUUCUAA	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN1195_c0_g1_450_TPlot.pdf
TRINITY_DN1195_c0_g1:452	si_a19	TRINITY_DN1195_c0_g1	441	461	452	-27.00	-19.00	0.703703703703704	10.5	2-9,460-453;12-21,450-441	1-1,461-461[UP5];10-11,452-451[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	AGAACUGAAGCAGAGUGGGUG&AGCCUAUUUAUUUUUAGUUCU	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1195_c0_g1_452_TPlot.pdf
TRINITY_DN1195_c0_g1:463	si_a780	TRINITY_DN1195_c0_g1	451	473	463	-27.30	-18.40	0.673992673992674	7	1-5,473-469;6-16,467-457;17-20,455-452	x-x,468-468[BULt];x-x,456-456[BULt];21-21,451-451[UP3]	.((((.(((((((((((.(((((&)))))-)))))))))))-)))).	CAGAGUGGGUGGAAGAGUUUGAA&UUCAA-CUCUUCUAUUU-UUCUA	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1195_c0_g1_463_TPlot.pdf
TRINITY_DN11960_c3_g1:79	si_s81	TRINITY_DN11960_c3_g1	55	88	79	-28.90	-19.00	0.657439446366782	29	2-10,87-79;11-21,65-55	1-1,88-88[UP5];x-x,78-66[BULt]	(((((((((((.............(((((((((.&.)))))))))-------------)))))))))))	GGAAGAGGAAGACUUGAAAAUACUGGAAAGAAAG&UUUUCUUUCC-------------UUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN11960_c3_g1_79_TPlot.pdf
TRINITY_DN11962_c0_g1:654	si_a545	TRINITY_DN11962_c0_g1	643	661	654	-28.10	-18.70	0.665480427046263	9.5	1-7,661-655;10-19,654-645	8-9,x-x[BULq];20-21,644-643[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	CAAGAGGAGUAG--UGGGCCG&CGGUUCAAUCUAUUUCUUUAU	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN11962_c0_g1_654_TPlot.pdf
TRINITY_DN1196_c0_g1:476	si_s253	TRINITY_DN1196_c0_g1	465	487	476	-29.50	-20.90	0.708474576271186	11	2-6,486-482;7-19,479-467	1-1,487-487[UP5];x-x,481-480[BULt];20-21,466-465[UP3]	..(((((((((((((..(((((.&.)))))--)))))))))))))..	AGGGGUAGUGUGUCGUUGGAGAC&AUUUCC--CGAUAUAUUACUCAA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN1196_c0_g1_476_TPlot.pdf
TRINITY_DN1196_c0_g1:477	si_s252	TRINITY_DN1196_c0_g1	466	488	477	-31.10	-20.90	0.672025723472669	11.5	3-7,486-482;8-20,479-467	1-2,488-487[UP5];x-x,481-480[BULt];21-21,466-466[UP3]	.(((((((((((((..(((((..&..)))))--))))))))))))).	GGGGUAGUGUGUCGUUGGAGACU&CAUUUCC--CGAUAUAUUACUCA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN1196_c0_g1_477_TPlot.pdf
TRINITY_DN11978_c0_g1:286	si_a790	TRINITY_DN11978_c0_g1	273	295	286	-25.80	-16.88	0.654263565891473	9.5	1-4,295-292;6-12,290-284;15-21,279-273	5-5,291-291[SIL];13-14,283-280[AILt]	(((((((....(((((((.((((&)))).)))))))--..)))))))	GGUUGGAUAGUAUAGAAACAUGG&CUAUUUUUCUAU--UUUCCAAUC	2	0.999992201745622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN11978_c0_g1_286_TPlot.pdf
TRINITY_DN11978_c0_g1:287	si_a789	TRINITY_DN11978_c0_g1	274	296	287	-24.80	-16.38	0.660483870967742	7.5	1-5,296-292;7-13,290-284;16-21,279-274	6-6,291-291[SIL];14-15,283-280[AILt]	((((((....(((((((.(((((&))))).)))))))--..))))))	GUUGGAUAGUAUAGAAACAUGGA&UCUAUUUUUCUAU--UUUCCAAU	2	0.999999986845277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN11978_c0_g1_287_TPlot.pdf
TRINITY_DN11978_c0_g1:308	si_s45	TRINITY_DN11978_c0_g1	297	317	308	-24.70	-17.20	0.696356275303644	16	9-21,309-297	1-8,317-310[UP5]	(((((((((((((........&........)))))))))))))	AACUUGGAGUCCAUUCGAACA&UUAAUAAUUGGAUUUCAAGUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN11978_c0_g1_308_TPlot.pdf
TRINITY_DN11978_c0_g1:309	si_s44	TRINITY_DN11978_c0_g1	298	318	309	-24.70	-16.30	0.659919028340081	18	10-21,309-298	1-9,318-310[UP5]	((((((((((((.........&.........))))))))))))	ACUUGGAGUCCAUUCGAACAC&UUUAAUAAUUGGAUUUCAAGU	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN11978_c0_g1_309_TPlot.pdf
TRINITY_DN1197_c0_g1:223	si_a20	TRINITY_DN1197_c0_g1	212	232	223	-26.70	-17.90	0.670411985018727	8.5	1-16,232-217	17-21,216-212[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUUCUUAAAGAUGGAUAGGC&GCCUAUUUAUUUUUAGUUCUA	2	0.999742436128764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1197_c0_g1_223_TPlot.pdf
TRINITY_DN1197_c0_g1:224	si_a19	TRINITY_DN1197_c0_g1	213	233	224	-27.00	-19.30	0.714814814814815	7.5	1-17,233-217	18-21,216-213[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUCUUAAAGAUGGAUAGGCU&AGCCUAUUUAUUUUUAGUUCU	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1197_c0_g1_224_TPlot.pdf
TRINITY_DN1197_c0_g1:225	si_a18	TRINITY_DN1197_c0_g1	214	234	225	-26.30	-19.50	0.741444866920152	7	2-18,233-217	1-1,234-234[UP5];19-21,216-214[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUCUUAAAGAUGGAUAGGCUA&AAGCCUAUUUAUUUUUAGUUC	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN1197_c0_g1_225_TPlot.pdf
TRINITY_DN1197_c0_g1:226	si_a17	TRINITY_DN1197_c0_g1	215	235	226	-24.30	-19.50	0.802469135802469	8	3-19,233-217	1-2,235-234[UP5];20-21,216-215[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UCUUAAAGAUGGAUAGGCUAC&AAAGCCUAUUUAUUUUUAGUU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN1197_c0_g1_226_TPlot.pdf
TRINITY_DN1197_c0_g1:227	si_a16	TRINITY_DN1197_c0_g1	216	236	227	-26.30	-19.50	0.741444866920152	9	4-20,233-217	1-3,236-234[UP5];21-21,216-216[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUUAAAGAUGGAUAGGCUACA&GAAAGCCUAUUUAUUUUUAGU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1197_c0_g1_227_TPlot.pdf
TRINITY_DN1197_c0_g1:228	si_a15	TRINITY_DN1197_c0_g1	217	237	228	-26.20	-19.40	0.740458015267176	9.5	5-21,233-217	1-4,237-234[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUAAAGAUGGAUAGGCUACAU&AGAAAGCCUAUUUAUUUUUAG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN1197_c0_g1_228_TPlot.pdf
TRINITY_DN1197_c0_g1:229	si_a14	TRINITY_DN1197_c0_g1	218	238	229	-26.50	-18.80	0.709433962264151	10.5	6-21,233-218	1-5,238-234[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAAAGAUGGAUAGGCUACAUU&GAGAAAGCCUAUUUAUUUUUA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a14_TRINITY_DN1197_c0_g1_229_TPlot.pdf
TRINITY_DN1197_c0_g1:2949	si_a860	TRINITY_DN1197_c0_g1	2939	2958	2949	-24.30	-15.80	0.650205761316872	7	1-11,2958-2948;17-21,2943-2939	12-16,2947-2944[AILq]	(((((....-(((((((((((&))))))))))).....)))))	AAUCUGUUA-AAUUGGGUUUC&GAAAUCCAAUUAUUAAAGAUU	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN1197_c0_g1_2949_TPlot.pdf
TRINITY_DN1197_c0_g1:2968	si_a350	TRINITY_DN1197_c0_g1	2957	2977	2968	-20.30	-14.80	0.729064039408867	13	7-21,2971-2957	1-6,2977-2972[UP5]	(((((((((((((((......&......)))))))))))))))	UCAAAGUGGAAUUAGCACUAA&AAAAUAUUAAUUCUAUUUUGA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1197_c0_g1_2968_TPlot.pdf
TRINITY_DN1197_c1_g1:75	si_a79	TRINITY_DN1197_c1_g1	65	84	75	-22.20	-14.50	0.653153153153153	7	2-12,83-73;14-18,72-68	1-1,84-84[UP5];13-13,x-x[BULq];19-21,67-65[UP3]	...(((((-(((((((((((.&.))))))))))).)))))...	CAGCUUAA-GAUGAAAAGCAG&UUGUUUUUCAUUAUUAAGAAA	2	0.999992487551351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1197_c1_g1_75_TPlot.pdf
TRINITY_DN11980_c0_g1:3035	si_s311	TRINITY_DN11980_c0_g1	3021	3044	3035	-30.60	-20.30	0.663398692810457	12	6-17,3039-3028;18-21,3024-3021	1-5,3044-3040[UP5];x-x,3027-3025[BULt]	((((...((((((((((((.....&.....))))))))))))---))))	AACACUUAGAAGGACAGAAGCAUA&GAAAAUUCUGUCCUUCU---UGUU	3	0.999960616924559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN11980_c0_g1_3035_TPlot.pdf
TRINITY_DN11980_c0_g1:3353	si_a505	TRINITY_DN11980_c0_g1	3341	3362	3353	-33.30	-23.50	0.705705705705706	6.5	3-13,3360-3350;14-20,3348-3342	1-2,3362-3361[UP5];x-x,3349-3349[BULt];21-21,3341-3341[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	GACAUUUCGAAGGAAGAUGAUG&UUUCGUCUUCCUU-GGAAUGUA	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN11980_c0_g1_3353_TPlot.pdf
TRINITY_DN11980_c0_g1:3354	si_a504	TRINITY_DN11980_c0_g1	3342	3363	3354	-32.90	-23.10	0.702127659574468	7.5	4-14,3360-3350;15-21,3348-3342	1-3,3363-3361[UP5];x-x,3349-3349[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	ACAUUUCGAAGGAAGAUGAUGA&UUUUCGUCUUCCUU-GGAAUGU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN11980_c0_g1_3354_TPlot.pdf
TRINITY_DN11980_c0_g1:3357	si_a501	TRINITY_DN11980_c0_g1	3346	3365	3357	-33.50	-22.30	0.665671641791045	8	1-4,3365-3362;7-17,3360-3350;19-21,3348-3346	5-6,3361-3361[AILq];18-18,3349-3349[SIL]	(((.(((((((((((.-((((&))))..))))))))))).)))	UUCGAAGGAAGAUGAU-GAUG&CGUUUUUCGUCUUCCUUGGAA	2	0.999999024306661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN11980_c0_g1_3357_TPlot.pdf
TRINITY_DN11980_c0_g1:3358	si_a500	TRINITY_DN11980_c0_g1	3347	3366	3358	-34.40	-22.80	0.662790697674419	8	1-5,3366-3362;8-18,3360-3350;20-21,3348-3347	6-7,3361-3361[AILq];19-19,3349-3349[SIL]	((.(((((((((((.-(((((&)))))..))))))))))).))	UCGAAGGAAGAUGAU-GAUGA&UCGUUUUUCGUCUUCCUUGGA	2	0.999995490125337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN11980_c0_g1_3358_TPlot.pdf
TRINITY_DN11980_c0_g1:3622	si_a68	TRINITY_DN11980_c0_g1	3611	3632	3622	-25.40	-17.60	0.692913385826772	12	1-9,3632-3624;14-20,3618-3612	10-13,3623-3619[AILt];21-21,3611-3611[UP3]	.(((((((.....(((((((((&)))))))))-....))))))).	AGAAGAGCUGCAAUGAGAGAAG&CUUCUUUCA-AAUUGUUUUUCA	2	0.999824886012476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN11980_c0_g1_3622_TPlot.pdf
TRINITY_DN11980_c0_g1:6688	si_a460	TRINITY_DN11980_c0_g1	6677	6697	6688	-21.60	-15.20	0.703703703703704	10.5	1-6,6697-6692;9-18,6689-6680	7-8,6691-6690[SIL];19-21,6679-6677[UP3]	...((((((((((..((((((&))))))..))))))))))...	CUAGCAUAUUGUACUUGACGA&UUGUUAUAUAUAAUAUGUAAU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN11980_c0_g1_6688_TPlot.pdf
TRINITY_DN11987_c0_g3:297	si_a221	TRINITY_DN11987_c0_g3	286	306	297	-25.20	-16.70	0.662698412698413	14.5	7-19,300-288	1-6,306-301[UP5];20-21,287-286[UP3]	..(((((((((((((......&......)))))))))))))..	GGGUAGAAAUAUGAGAUUCGA&AUUAAACUCAUGUUUCUAUAA	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN11987_c0_g3_297_TPlot.pdf
TRINITY_DN11987_c0_g4:827	si_a461	TRINITY_DN11987_c0_g4	816	836	827	-21.50	-15.10	0.702325581395349	9.5	1-11,836-826;13-17,824-820	12-12,825-825[SIL];18-21,819-816[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UUGCGCAUAAUGUGUAUAGCA&UGUUAUAUAUAAUAUGUAAUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN11987_c0_g4_827_TPlot.pdf
TRINITY_DN1198_c0_g1:1016	si_s532	TRINITY_DN1198_c0_g1	999	1025	1016	-28.70	-18.70	0.651567944250871	14	3-6,1023-1020;9-13,1017-1013;14-21,1006-999	1-2,1025-1024[UP5];7-8,1019-1018[SIL];x-x,1012-1007[BULt]	((((((((......(((((..((((..&..))))..)))))------))))))))	UGAUCGGAUGAUGCUCAGAUUUGAUAG&AAAUCAUUUUUGA------UCCGAUCA	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN1198_c0_g1_1016_TPlot.pdf
TRINITY_DN1198_c0_g1:1666	si_a342	TRINITY_DN1198_c0_g1	1655	1675	1666	-28.20	-18.78	0.665957446808511	7.5	1-9,1675-1667;12-15,1664-1661;19-21,1657-1655	10-11,1666-1665[SIL];16-18,1660-1658[SIL]	(((...((((..(((((((((&)))))))))..))))...)))	GAAGUCGUAUGGUCGGGACAA&UUGUCCCGAAAAUAUUAAUUC	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a342_TRINITY_DN1198_c0_g1_1666_TPlot.pdf
TRINITY_DN1198_c0_g1:2755	si_s73	TRINITY_DN1198_c0_g1	2744	2764	2755	-24.00	-15.90	0.6625	16	7-20,2758-2745	1-6,2764-2759[UP5];21-21,2744-2744[UP3]	.((((((((((((((......&......)))))))))))))).	UGAGGAGAGAGAGAGUGUCUC&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1198_c0_g1_2755_TPlot.pdf
TRINITY_DN1198_c0_g1:2799	si_a757	TRINITY_DN1198_c0_g1	2784	2808	2799	-33.10	-22.50	0.6797583081571	15.5	1-11,2808-2798;12-18,2793-2787	x-x,2797-2794[BULt];19-21,2786-2784[UP3]	...(((((((....(((((((((((&)))))))))))----)))))))...	AGGCAGAGGCGGAGCCAGGGGGGGU&ACCUCCUUUGG----GUUUUUGAUU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1198_c0_g1_2799_TPlot.pdf
TRINITY_DN1198_c0_g1:2800	si_a756	TRINITY_DN1198_c0_g1	2785	2809	2800	-33.10	-22.70	0.685800604229607	15.5	2-12,2808-2798;13-19,2793-2787	1-1,2809-2809[UP5];x-x,2797-2794[BULt];20-21,2786-2785[UP3]	..(((((((....(((((((((((.&.)))))))))))----)))))))..	GGCAGAGGCGGAGCCAGGGGGGGUA&AACCUCCUUUGG----GUUUUUGAU	3	0.999969729732114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1198_c0_g1_2800_TPlot.pdf
TRINITY_DN1198_c0_g1:2801	si_a755	TRINITY_DN1198_c0_g1	2786	2810	2801	-34.90	-22.70	0.650429799426934	12.5	3-13,2808-2798;14-20,2793-2787	1-2,2810-2809[UP5];x-x,2797-2794[BULt];21-21,2786-2786[UP3]	.(((((((....(((((((((((..&..)))))))))))----))))))).	GCAGAGGCGGAGCCAGGGGGGGUAG&GAACCUCCUUUGG----GUUUUUGA	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN1198_c0_g1_2801_TPlot.pdf
TRINITY_DN1198_c0_g1:2802	si_a754	TRINITY_DN1198_c0_g1	2787	2811	2802	-34.60	-22.50	0.65028901734104	13.5	4-14,2808-2798;15-21,2793-2787	1-3,2811-2809[UP5];x-x,2797-2794[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	CAGAGGCGGAGCCAGGGGGGGUAGA&UGAACCUCCUUUGG----GUUUUUG	3	0.999996313032064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN1198_c0_g1_2802_TPlot.pdf
TRINITY_DN1198_c0_g1:3014	si_a56	TRINITY_DN1198_c0_g1	3003	3024	3014	-38.90	-26.30	0.676092544987147	8.5	1-4,3024-3021;6-9,3019-3016;11-20,3013-3004	5-5,3020-3020[SIL];10-10,3015-3014[AILt];21-21,3003-3003[UP3]	.((((((((((..((((.((((&)))).))))-.)))))))))).	AGGGGGAAGCGCCGUCGCCUCC&GGAGUCGAC-UCGCUUCUUUCA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN1198_c0_g1_3014_TPlot.pdf
TRINITY_DN1198_c0_g1:583	si_a100	TRINITY_DN1198_c0_g1	573	592	583	-29.70	-19.58	0.659259259259259	8.5	2-13,591-580;20-21,574-573	1-1,592-592[UP5];14-19,579-575[AILq]	((.....-((((((((((((.&.))))))))))))......))	CGCCGCG-GUCUUCGUUGCCA&AGGUAACGAAGAUAAAAUACG	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a100_TRINITY_DN1198_c0_g1_583_TPlot.pdf
TRINITY_DN1198_c0_g1:587	si_a96	TRINITY_DN1198_c0_g1	576	596	587	-27.90	-19.50	0.698924731182796	14.5	6-17,591-580	1-5,596-592[UP5];18-21,579-576[UP3]	....((((((((((((.....&.....))))))))))))....	CGCGGUCUUCGUUGCCAUGGC&GAAAAGGUAACGAAGAUAAAA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a96_TRINITY_DN1198_c0_g1_587_TPlot.pdf
TRINITY_DN1198_c0_g1:922	si_s867	TRINITY_DN1198_c0_g1	912	930	922	-37.80	-26.40	0.698412698412698	7	1-5,930-926;7-17,925-915;19-20,914-913	6-6,x-x[BULq];18-18,x-x[BULq];21-21,912-912[UP3]	.((-(((((((((((-(((((&))))).))))))))))).)).	CGG-UCUGAGGCUGG-AGGUC&GACCUACCGGUCUUAGAACUA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s867_TRINITY_DN1198_c0_g1_922_TPlot.pdf
TRINITY_DN1198_c0_g1:923	si_s866	TRINITY_DN1198_c0_g1	913	931	923	-38.10	-26.20	0.687664041994751	7	2-6,930-926;8-18,925-915;20-21,914-913	1-1,931-931[UP5];7-7,x-x[BULq];19-19,x-x[BULq]	((-(((((((((((-(((((.&.))))).))))))))))).))	GG-UCUGAGGCUGG-AGGUCG&AGACCUACCGGUCUUAGAACU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s866_TRINITY_DN1198_c0_g1_923_TPlot.pdf
TRINITY_DN1198_c0_g1:924	si_s865	TRINITY_DN1198_c0_g1	913	932	924	-37.80	-25.90	0.685185185185185	9	3-7,930-926;9-19,925-915	1-2,932-931[UP5];8-8,x-x[BULq];20-21,914-913[UP3]	..(((((((((((-(((((..&..))))).)))))))))))..	GGUCUGAGGCUGG-AGGUCGU&UAGACCUACCGGUCUUAGAAC	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s865_TRINITY_DN1198_c0_g1_924_TPlot.pdf
TRINITY_DN1198_c0_g1:925	si_s864	TRINITY_DN1198_c0_g1	914	933	925	-37.80	-26.10	0.690476190476191	9	1-1,933-933;4-8,930-926;10-20,925-915	2-3,932-931[SIL];9-9,x-x[BULq];21-21,914-914[UP3]	.(((((((((((-(((((..(&)..))))).))))))))))).	GUCUGAGGCUGG-AGGUCGUG&CUAGACCUACCGGUCUUAGAA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s864_TRINITY_DN1198_c0_g1_925_TPlot.pdf
TRINITY_DN1198_c0_g1:926	si_s863	TRINITY_DN1198_c0_g1	915	934	926	-40.10	-26.30	0.655860349127182	8.5	2-2,933-933;5-9,930-926;11-21,925-915	1-1,934-934[UP5];3-4,932-931[SIL];10-10,x-x[BULq]	(((((((((((-(((((..(.&.)..))))).)))))))))))	UCUGAGGCUGG-AGGUCGUGA&CCUAGACCUACCGGUCUUAGA	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s863_TRINITY_DN1198_c0_g1_926_TPlot.pdf
TRINITY_DN1198_c0_g1:962	si_a859	TRINITY_DN1198_c0_g1	951	973	962	-25.00	-16.70	0.668	8.5	1-8,973-966;9-20,963-952	x-x,965-964[BULt];21-21,951-951[UP3]	.((((((((((((..((((((((&))))))))--)))))))))))).	CUUUUUGGUGGUUCAGGAUUUCA&UGAAAUCC--AAUUAUUAAAGAU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a859_TRINITY_DN1198_c0_g1_962_TPlot.pdf
TRINITY_DN1198_c0_g1:963	si_a858	TRINITY_DN1198_c0_g1	952	974	963	-24.90	-17.30	0.694779116465864	7	1-9,974-966;10-21,963-952	x-x,965-964[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	UUUUUGGUGGUUCAGGAUUUCAA&UUGAAAUCC--AAUUAUUAAAGA	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a858_TRINITY_DN1198_c0_g1_963_TPlot.pdf
TRINITY_DN11997_c2_g2:29	si_a406	TRINITY_DN11997_c2_g2	18	38	29	-19.80	-16.20	0.818181818181818	5	1-18,38-21	19-21,20-18[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGAAAAUAUAAAUAAAACGAU&AUUGUUUUGUUUAUAUUUAAA	0	0.0563825660831423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN11997_c2_g2_29_TPlot.pdf
TRINITY_DN11_c0_g1:4207	si_a409	TRINITY_DN11_c0_g1	4196	4218	4207	-19.50	-12.90	0.661538461538462	11	1-7,4218-4212;8-19,4209-4198	x-x,4211-4210[BULt];20-21,4197-4196[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	CGAUUUAAAUGUAGGUAUAGAGC&GUUUUGU--UUAUAUUUAAAUAA	3	0.999999999999883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN11_c0_g1_4207_TPlot.pdf
TRINITY_DN11_c0_g1:4208	si_a408	TRINITY_DN11_c0_g1	4197	4219	4208	-20.10	-13.70	0.681592039800995	10	1-8,4219-4212;9-20,4209-4198	x-x,4211-4210[BULt];21-21,4197-4197[UP3]	.((((((((((((..((((((((&))))))))--)))))))))))).	GAUUUAAAUGUAGGUAUAGAGCA&UGUUUUGU--UUAUAUUUAAAUA	3	0.999999997855688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN11_c0_g1_4208_TPlot.pdf
TRINITY_DN11_c0_g1:4209	si_a407	TRINITY_DN11_c0_g1	4198	4220	4209	-19.80	-13.50	0.681818181818182	9.5	2-9,4219-4212;10-21,4209-4198	1-1,4220-4220[UP5];x-x,4211-4210[BULt]	((((((((((((..((((((((.&.))))))))--))))))))))))	AUUUAAAUGUAGGUAUAGAGCAU&UUGUUUUGU--UUAUAUUUAAAU	3	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN11_c0_g1_4209_TPlot.pdf
TRINITY_DN11_c0_g1:4992	si_a17	TRINITY_DN11_c0_g1	4983	5001	4992	-24.30	-16.00	0.65843621399177	9	4-11,4998-4991;14-21,4990-4983	1-3,5001-4999[UP5];12-13,x-x[BULq]	((((((((--((((((((...&...))))))))..))))))))	AACUAAAA--AAGUAGGCAGU&AAAGCCUAUUUAUUUUUAGUU	3	0.999999997811836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN11_c0_g1_4992_TPlot.pdf
TRINITY_DN11_c0_g1:512	si_s79	TRINITY_DN11_c0_g1	501	521	512	-26.20	-17.58	0.670992366412214	9	3-12,519-510;16-21,506-501	1-2,521-520[UP5];13-15,509-507[SIL]	((((((...((((((((((..&..))))))))))...))))))	GGGAAGUAUGGGAAGAAGAUG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN11_c0_g1_512_TPlot.pdf
TRINITY_DN11_c0_g2:1368	si_a401	TRINITY_DN11_c0_g2	1357	1378	1368	-22.60	-14.80	0.654867256637168	10	1-6,1378-1373;7-10,1371-1368;13-19,1365-1359	x-x,1372-1372[BULt];11-12,1367-1366[SIL];20-21,1358-1357[UP3]	..(((((((..((((.((((((&))))))-))))..)))))))..	UAGUAGACAUUACAACUUCUGU&AUAGAA-UUGUUUUGUUUAUAU	2	0.999999942864456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN11_c0_g2_1368_TPlot.pdf
TRINITY_DN11_c0_g2:662	si_s77	TRINITY_DN11_c0_g2	650	671	662	-25.50	-17.10	0.670588235294118	12	2-10,670-662;13-21,658-650	1-1,671-671[UP5];11-12,661-659[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	GAAGGGAGGUUUAGAAGGAGGU&UUUUUUUUCU-UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN11_c0_g2_662_TPlot.pdf
TRINITY_DN12011_c0_g1:3585	si_a405	TRINITY_DN12011_c0_g1	3574	3594	3585	-19.80	-13.30	0.671717171717172	10	4-10,3591-3585;12-20,3583-3575	1-3,3594-3592[UP5];11-11,3584-3584[SIL];21-21,3574-3574[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AUGGAUAUAAUCAAGACACUU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN12011_c0_g1_3585_TPlot.pdf
TRINITY_DN12011_c0_g1:3896	si_s73	TRINITY_DN12011_c0_g1	3881	3905	3896	-24.00	-16.10	0.670833333333333	11	1-14,3905-3892;15-19,3887-3883	x-x,3891-3888[BULt];20-21,3882-3881[UP3]	..(((((....((((((((((((((&))))))))))))))----)))))..	UCAGGAGUGCCAGGAGAGAAAUGGG&UCUAUUUUUUUUCU----UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12011_c0_g1_3896_TPlot.pdf
TRINITY_DN12011_c0_g1:3897	si_s72	TRINITY_DN12011_c0_g1	3882	3906	3897	-24.10	-16.60	0.688796680497925	10.5	1-15,3906-3892;16-20,3887-3883	x-x,3891-3888[BULt];21-21,3882-3882[UP3]	.(((((....(((((((((((((((&)))))))))))))))----))))).	CAGGAGUGCCAGGAGAGAAAUGGGG&UUCUAUUUUUUUUCU----UUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN12011_c0_g1_3897_TPlot.pdf
TRINITY_DN12014_c0_g1:401	si_s49	TRINITY_DN12014_c0_g1	390	410	401	-29.30	-19.60	0.668941979522184	7	1-17,410-394	18-21,393-390[UP3]	....(((((((((((((((((&)))))))))))))))))....	GAAGAAUUUGAGAUCCAGUUG&UAAUUGGAUUUCAAGUUAGCA	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN12014_c0_g1_401_TPlot.pdf
TRINITY_DN12014_c0_g1:539	si_s82	TRINITY_DN12014_c0_g1	528	548	539	-28.90	-18.90	0.653979238754325	10.5	5-17,544-532;19-21,530-528	1-4,548-545[UP5];18-18,531-531[SIL]	(((.(((((((((((((....&....))))))))))))).)))	AAGCGGAAGGAAGGAGAUAUC&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN12014_c0_g1_539_TPlot.pdf
TRINITY_DN12014_c0_g1:542	si_s75	TRINITY_DN12014_c0_g1	531	551	542	-24.00	-17.00	0.708333333333333	16.5	8-20,544-532	1-7,551-545[UP5];21-21,531-531[UP3]	.(((((((((((((.......&.......))))))))))))).	CGGAAGGAAGGAGAUAUCCUU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12014_c0_g1_542_TPlot.pdf
TRINITY_DN12014_c0_g1:543	si_s74	TRINITY_DN12014_c0_g1	532	553	543	-25.00	-17.58	0.7032	15	1-3,553-551;9-21,544-532	4-8,550-545[AILt]	(((((((((((((......(((&)))-.....)))))))))))))	GGAAGGAAGGAGAUAUCCUUGG&CUA-UUUUUUUUCUUUCCUUUC	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12014_c0_g1_543_TPlot.pdf
TRINITY_DN12014_c0_g1:574	si_a21	TRINITY_DN12014_c0_g1	563	586	574	-24.30	-16.80	0.691358024691358	13	1-4,586-583;5-18,579-566	x-x,582-580[BULt];19-21,565-563[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	AGCGGACUGGGAAUGAAAGCUAGG&CCUA---UUUAUUUUUAGUUCUAA	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN12014_c0_g1_574_TPlot.pdf
TRINITY_DN12014_c0_g1:577	si_a327	TRINITY_DN12014_c0_g1	566	586	577	-28.40	-18.50	0.651408450704225	12.5	6-16,581-571;18-21,569-566	1-5,586-582[UP5];17-17,570-570[SIL]	((((.(((((((((((.....&.....))))))))))).))))	GGACUGGGAAUGAAAGCUAGG&UGAUUUUUUUAUUCCUUGUCC	4	0.999999999927433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN12014_c0_g1_577_TPlot.pdf
TRINITY_DN12024_c0_g1:744	si_s809	TRINITY_DN12024_c0_g1	734	753	744	-28.50	-18.80	0.659649122807018	7.5	1-14,753-740;16-18,739-737	15-15,x-x[BULq];19-21,736-734[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	UCCGAG-GAGGGUAAUGAAGG&UCUUCGUUACCUUUUCUUAAU	4	0.999999999934549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN12024_c0_g1_744_TPlot.pdf
TRINITY_DN12027_c0_g1:592	si_a413	TRINITY_DN12027_c0_g1	580	602	592	-18.40	-12.10	0.657608695652174	4.5	1-8,602-595;9-17,593-585;18-21,583-580	x-x,594-594[BULt];x-x,584-584[BULt]	((((.(((((((((.((((((((&))))))))-)))))))))-))))	AUGUAUUAUUUGAAUUAUAAACA&UGUUUAUA-UUUAAAUAA-AUAU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN12027_c0_g1_592_TPlot.pdf
TRINITY_DN12028_c1_g1:174	si_s1	TRINITY_DN12028_c1_g1	163	183	174	-18.70	-13.40	0.716577540106952	11	2-17,182-167	1-1,183-183[UP5];18-21,166-163[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUCAAAUGGGUAGUGUGGGAC&UUUUUAUAUUACUUAUUAUUA	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN12028_c1_g1_174_TPlot.pdf
TRINITY_DN12029_c1_g1:217	si_s308	TRINITY_DN12029_c1_g1	206	226	217	-32.80	-22.60	0.689024390243902	9	4-7,223-220;9-21,218-206	1-3,226-224[UP5];8-8,219-219[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AAGAAGGACGGAGCUUUCUCU&UGCGAAAAUUCUGUCCUUCUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN12029_c1_g1_217_TPlot.pdf
TRINITY_DN12029_c2_g1:175	si_s75	TRINITY_DN12029_c2_g1	164	184	175	-24.00	-15.60	0.65	12.5	5-18,180-167;20-20,165-165	1-4,184-181[UP5];19-19,166-166[SIL];21-21,164-164[UP3]	.(.((((((((((((((....&....)))))))))))))).).	UGUGGGGAGAGAGAAAGCUCC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12029_c2_g1_175_TPlot.pdf
TRINITY_DN1202_c0_g1:305	si_a758	TRINITY_DN1202_c0_g1	294	314	305	-34.00	-22.70	0.667647058823529	8.5	1-11,314-304;14-18,301-297	12-13,303-302[SIL];19-21,296-294[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	AAUUCGAACCCUCAGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.99999818466634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1202_c0_g1_305_TPlot.pdf
TRINITY_DN1202_c0_g1:308	si_a755	TRINITY_DN1202_c0_g1	297	317	308	-34.90	-24.50	0.702005730659026	8	1-1,317-317;4-14,314-304;17-21,301-297	2-3,316-315[SIL];15-16,303-302[SIL]	(((((..(((((((((((..(&)..)))))))))))..)))))	UCGAACCCUCAGAGGAGGGGC&GAACCUCCUUUGGGUUUUUGA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN1202_c0_g1_308_TPlot.pdf
TRINITY_DN1202_c0_g1:310	si_a753	TRINITY_DN1202_c0_g1	297	319	310	-33.10	-23.10	0.697885196374622	10.5	2-3,318-317;6-13,314-307;14-19,304-299	1-1,319-319[UP5];4-5,316-315[SIL];x-x,306-305[BULt];20-21,298-297[UP3]	..((((((..((((((((..((.&.))..))))))))--))))))..	UCGAACCCUCAGAGGAGGGGCAG&AUGAACCUCCUUU--GGGUUUUU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN1202_c0_g1_310_TPlot.pdf
TRINITY_DN1202_c0_g1:311	si_a752	TRINITY_DN1202_c0_g1	298	320	311	-34.80	-23.10	0.663793103448276	11	3-4,318-317;7-14,314-307;15-20,304-299	1-2,320-319[UP5];5-6,316-315[SIL];x-x,306-305[BULt];21-21,298-298[UP3]	.((((((..((((((((..((..&..))..))))))))--)))))).	CGAACCCUCAGAGGAGGGGCAGG&CAUGAACCUCCUUU--GGGUUUU	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN1202_c0_g1_311_TPlot.pdf
TRINITY_DN1202_c0_g1:312	si_a751	TRINITY_DN1202_c0_g1	299	320	312	-37.20	-25.50	0.685483870967742	9	1-2,320-319;4-5,318-317;8-15,314-307;16-21,304-299	3-3,x-x[BULq];6-7,316-315[SIL];x-x,306-305[BULt]	((((((..((((((((..((-((&)).))..))))))))--))))))	GAACCCUCAGAGGAGGGGCA-GG&CCAUGAACCUCCUUU--GGGUUU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN1202_c0_g1_312_TPlot.pdf
TRINITY_DN1202_c0_g1:316	si_s312	TRINITY_DN1202_c0_g1	305	325	316	-29.00	-19.10	0.658620689655173	13	5-17,321-309;19-19,307-307	1-4,325-322[UP5];18-18,308-308[SIL];20-21,306-305[UP3]	..(.(((((((((((((....&....))))))))))))).)..	UCAGAGGAGGGGCAGGAGUGG&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999999334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1202_c0_g1_316_TPlot.pdf
TRINITY_DN1202_c0_g1:318	si_s72	TRINITY_DN1202_c0_g1	308	327	318	-24.10	-16.20	0.672199170124481	11	2-10,326-318;13-21,316-308	1-1,327-327[UP5];11-12,317-317[AILq]	(((((((((.-(((((((((.&.)))))))))..)))))))))	GAGGAGGGGC-AGGAGUGGAU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1202_c0_g1_318_TPlot.pdf
TRINITY_DN12038_c2_g1:511	si_a386	TRINITY_DN12038_c2_g1	499	520	511	-24.80	-16.30	0.657258064516129	6	1-4,520-517;6-12,515-509;13-21,507-499	5-5,516-516[SIL];x-x,508-508[BULt]	(((((((((.(((((((.((((&)))).)))))))-)))))))))	UUCUAUAUUGUUUAAUUGGAGA&UUUCGAAUUAAG-AAUAUAGAA	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN12038_c2_g1_511_TPlot.pdf
TRINITY_DN12038_c2_g1:95	si_a894	TRINITY_DN12038_c2_g1	84	104	95	-21.70	-15.10	0.695852534562212	6.5	2-10,103-95;12-21,93-84	1-1,104-104[UP5];11-11,94-94[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AUAUUAUUUGCUGUUACUGUU&UAUAGUAAUAAUAAGUAAUAU	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN12038_c2_g1_95_TPlot.pdf
TRINITY_DN12038_c6_g1:235	si_a487	TRINITY_DN12038_c6_g1	224	244	235	-24.80	-16.70	0.673387096774194	8.5	1-13,244-232;15-17,230-228	14-14,231-231[SIL];18-21,227-224[UP3]	....(((.(((((((((((((&))))))))))))).)))....	GGUUAUGUCAUGUUCUGUGUA&UAUAUAGAAUAUGUCGUUUUU	0	0.136349434652237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN12038_c6_g1_235_TPlot.pdf
TRINITY_DN1203_c0_g1:5779	si_s33	TRINITY_DN1203_c0_g1	5768	5789	5779	-24.10	-16.00	0.663900414937759	8.5	2-3,5788-5787;4-19,5785-5770	1-1,5789-5789[UP5];x-x,5786-5786[BULt];20-21,5769-5768[UP3]	..((((((((((((((((.((.&.))-))))))))))))))))..	AUUUAUUGAGGGUUUGGUAUGG&GCA-ACUAAAUCUUUAAUAAUU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN1203_c0_g1_5779_TPlot.pdf
TRINITY_DN1203_c0_g1:5847	si_a326	TRINITY_DN1203_c0_g1	5836	5859	5847	-26.20	-18.40	0.702290076335878	10	1-9,5859-5851;10-21,5847-5836	x-x,5850-5848[BULt]	((((((((((((...(((((((((&)))))))))---))))))))))))	GAUAAGGAGUAAUAUAAAGGUUAU&AUGAUUUUU---UUAUUCCUUGUC	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1203_c0_g1_5847_TPlot.pdf
TRINITY_DN12040_c0_g1:1150	si_a460	TRINITY_DN12040_c0_g1	1139	1162	1150	-21.60	-17.00	0.787037037037037	11.5	2-9,1161-1154;10-21,1150-1139	1-1,1162-1162[UP5];x-x,1153-1151[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	GUUACAUAUUGUAAAGUGUGACAC&UUGUUAUAU---AUAAUAUGUAAU	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN12040_c0_g1_1150_TPlot.pdf
TRINITY_DN12040_c0_g1:1154	si_a459	TRINITY_DN12040_c0_g1	1140	1163	1154	-23.20	-15.70	0.676724137931034	13	3-10,1161-1154;11-21,1150-1140	1-2,1163-1162[UP5];x-x,1153-1151[BULt]	(((((((((((...((((((((..&..))))))))---)))))))))))	UUACAUAUUGUAAAGUGUGACACU&GUUGUUAUAU---AUAAUAUGUAA	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN12040_c0_g1_1154_TPlot.pdf
TRINITY_DN12043_c0_g1:464	si_a552	TRINITY_DN12043_c0_g1	451	473	464	-33.10	-22.60	0.682779456193353	9.5	3-12,471-462;13-19,460-454;20-21,452-451	1-2,473-472[UP5];x-x,461-461[BULt];x-x,453-453[BULt]	((.(((((((.((((((((((..&..))))))))))-)))))))-))	CGUGGGAGGUCAAGGAGAUGGCA&AUCUAUUUCUUU-AUCUCCC-CG	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN12043_c0_g1_464_TPlot.pdf
TRINITY_DN12051_c0_g1:342	si_a71	TRINITY_DN12051_c0_g1	331	351	342	-23.30	-15.20	0.652360515021459	9	1-8,351-344;10-10,342-342;12-18,340-334	9-9,343-343[SIL];11-11,341-341[SIL];19-21,333-331[UP3]	...(((((((.(.((((((((&)))))))).).)))))))...	UCCUGAAGGAGAUUUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN12051_c0_g1_342_TPlot.pdf
TRINITY_DN12051_c0_g1:556	si_a71	TRINITY_DN12051_c0_g1	545	565	556	-23.30	-15.20	0.652360515021459	9	1-8,565-558;10-10,556-556;12-18,554-548	9-9,557-557[SIL];11-11,555-555[SIL];19-21,547-545[UP3]	...(((((((.(.((((((((&)))))))).).)))))))...	CCCUGAAGGAGAUUUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN12051_c0_g1_556_TPlot.pdf
TRINITY_DN12053_c0_g1:1002	si_a792	TRINITY_DN12053_c0_g1	990	1010	1002	-27.60	-18.40	0.666666666666667	9	2-7,1009-1004;9-17,1003-995;18-21,993-990	1-1,1010-1010[UP5];8-8,x-x[BULq];x-x,994-994[BULt]	((((.(((((((((-((((((.&.)))))).)))))))))-))))	CGGAUUUGGAGGGU-GAGGAAG&AUUUUUCUAUUUUCCAA-UCCG	3	0.999989435649234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN12053_c0_g1_1002_TPlot.pdf
TRINITY_DN12053_c0_g1:1077	si_s97	TRINITY_DN12053_c0_g1	1066	1090	1077	-36.30	-24.28	0.668870523415978	14.5	1-9,1090-1082;11-19,1076-1068	10-10,1081-1077[AILt];20-21,1067-1066[UP3]	..(((((((((.....(((((((((&)))))))))----.)))))))))..	UGUCAAUCCGAUUGAUGCGGAGGAG&CUUCUUCGC----UUCGGAUUGGAA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN12053_c0_g1_1077_TPlot.pdf
TRINITY_DN12053_c0_g1:1082	si_s96	TRINITY_DN12053_c0_g1	1067	1091	1082	-37.20	-24.38	0.655376344086021	14.5	2-10,1090-1082;12-20,1076-1068	1-1,1091-1091[UP5];11-11,1081-1077[AILt];21-21,1067-1067[UP3]	.(((((((((.....(((((((((.&.)))))))))----.))))))))).	GUCAAUCCGAUUGAUGCGGAGGAGG&UCUUCUUCGC----UUCGGAUUGGA	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN12053_c0_g1_1082_TPlot.pdf
TRINITY_DN12053_c0_g1:1087	si_a227	TRINITY_DN12053_c0_g1	1075	1096	1087	-26.80	-17.72	0.661194029850746	10.5	1-5,1096-1092;7-11,1090-1086;15-21,1081-1075	6-6,1091-1091[SIL];12-14,1085-1082[AILt]	(((((((....(((((.(((((&))))).)))))-...)))))))	GAUUGAUGCGGAGGAGGAUGAG&CUCAUGUUUCU-AUAAUCAAUU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN12053_c0_g1_1087_TPlot.pdf
TRINITY_DN12053_c0_g1:1269	si_s626	TRINITY_DN12053_c0_g1	1248	1278	1269	-36.10	-24.30	0.673130193905817	24	1-4,1278-1275;6-11,1273-1268;12-20,1257-1249	5-5,1274-1274[SIL];x-x,1267-1258[BULt];21-21,1248-1248[UP3]	.(((((((((..........((((((.((((&)))).))))))----------))))))))).	UCGCCUACGAAUCCGACGCCAAGGAUGGCUU&AAGCGAUCUUU----------UCGUAGGCGU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN12053_c0_g1_1269_TPlot.pdf
TRINITY_DN12053_c0_g1:1270	si_s625	TRINITY_DN12053_c0_g1	1249	1279	1270	-37.00	-27.30	0.737837837837838	23	1-5,1279-1275;7-12,1273-1268;13-21,1257-1249	6-6,1274-1274[SIL];x-x,1267-1258[BULt]	(((((((((..........((((((.(((((&))))).))))))----------)))))))))	CGCCUACGAAUCCGACGCCAAGGAUGGCUUG&CAAGCGAUCUUU----------UCGUAGGCG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN12053_c0_g1_1270_TPlot.pdf
TRINITY_DN12053_c0_g1:1271	si_s624	TRINITY_DN12053_c0_g1	1250	1280	1271	-37.90	-28.50	0.751978891820581	13	1-6,1280-1275;8-13,1273-1268;14-21,1257-1250	7-7,1274-1274[SIL];x-x,1267-1258[BULt]	((((((((..........((((((.((((((&)))))).))))))----------))))))))	GCCUACGAAUCCGACGCCAAGGAUGGCUUGG&CCAAGCGAUCUUU----------UCGUAGGC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN12053_c0_g1_1271_TPlot.pdf
TRINITY_DN12053_c0_g1:1272	si_s623	TRINITY_DN12053_c0_g1	1251	1281	1272	-36.40	-26.70	0.733516483516484	13	1-7,1281-1275;9-14,1273-1268;15-21,1257-1251	8-8,1274-1274[SIL];x-x,1267-1258[BULt]	(((((((..........((((((.(((((((&))))))).))))))----------)))))))	CCUACGAAUCCGACGCCAAGGAUGGCUUGGA&UCCAAGCGAUCUUU----------UCGUAGG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN12053_c0_g1_1272_TPlot.pdf
TRINITY_DN12053_c0_g1:1278	si_s617	TRINITY_DN12053_c0_g1	1267	1287	1278	-28.30	-19.00	0.671378091872792	13.5	7-13,1281-1275;15-20,1273-1268	1-6,1287-1282[UP5];14-14,1274-1274[SIL];21-21,1267-1267[UP3]	.((((((.(((((((......&......))))))).)))))).	CAAGGAUGGCUUGGAGAAGGU&UUUAAAUCCAAGCGAUCUUUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN12053_c0_g1_1278_TPlot.pdf
TRINITY_DN12053_c0_g1:1279	si_s616	TRINITY_DN12053_c0_g1	1268	1288	1279	-28.30	-19.00	0.671378091872792	14.5	8-14,1281-1275;16-21,1273-1268	1-7,1288-1282[UP5];15-15,1274-1274[SIL]	((((((.(((((((.......&.......))))))).))))))	AAGGAUGGCUUGGAGAAGGUG&UUUUAAAUCCAAGCGAUCUUU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN12053_c0_g1_1279_TPlot.pdf
TRINITY_DN12053_c0_g1:315	si_s11	TRINITY_DN12053_c0_g1	304	324	315	-23.60	-16.20	0.686440677966102	4	1-12,324-313;14-20,311-305	13-13,312-312[SIL];21-21,304-304[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	UUUGAUAUUGUGAUAAUAAGU&ACUUAUUAUUACUAUAUUGAU	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN12053_c0_g1_315_TPlot.pdf
TRINITY_DN12053_c0_g1:316	si_s10	TRINITY_DN12053_c0_g1	305	325	316	-23.80	-16.10	0.676470588235294	4	2-13,324-313;15-21,311-305	1-1,325-325[UP5];14-14,312-312[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UUGAUAUUGUGAUAAUAAGUU&UACUUAUUAUUACUAUAUUGA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN12053_c0_g1_316_TPlot.pdf
TRINITY_DN12053_c0_g1:317	si_s9	TRINITY_DN12053_c0_g1	306	326	317	-22.90	-15.20	0.663755458515284	6.5	3-14,324-313;16-20,311-307	1-2,326-325[UP5];15-15,312-312[SIL];21-21,306-306[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	UGAUAUUGUGAUAAUAAGUUA&UUACUUAUUAUUACUAUAUUG	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN12053_c0_g1_317_TPlot.pdf
TRINITY_DN12053_c0_g1:318	si_s8	TRINITY_DN12053_c0_g1	307	327	318	-21.30	-14.90	0.699530516431925	7	4-15,324-313;17-21,311-307	1-3,327-325[UP5];16-16,312-312[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GAUAUUGUGAUAAUAAGUUAG&AUUACUUAUUAUUACUAUAUU	2	0.991386537167641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN12053_c0_g1_318_TPlot.pdf
TRINITY_DN12053_c0_g1:688	si_s534	TRINITY_DN12053_c0_g1	672	697	688	-28.80	-19.30	0.670138888888889	15	1-11,697-687;12-19,681-674	x-x,686-682[BULt];20-21,673-672[UP3]	..((((((((.....(((((((((((&)))))))))))-----))))))))..	AAUGGUUGGAGACCAUCAAAGGUGAU&AUCAUUUUUGA-----UCCGAUCAAA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN12053_c0_g1_688_TPlot.pdf
TRINITY_DN12053_c0_g1:689	si_s533	TRINITY_DN12053_c0_g1	673	698	689	-28.80	-19.60	0.680555555555556	15	2-12,697-687;13-20,681-674	1-1,698-698[UP5];x-x,686-682[BULt];21-21,673-673[UP3]	.((((((((.....(((((((((((.&.)))))))))))-----)))))))).	AUGGUUGGAGACCAUCAAAGGUGAUG&AAUCAUUUUUGA-----UCCGAUCAA	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN12053_c0_g1_689_TPlot.pdf
TRINITY_DN12053_c0_g1:690	si_s532	TRINITY_DN12053_c0_g1	674	699	690	-28.70	-19.40	0.67595818815331	11	3-13,697-687;14-21,681-674	1-2,699-698[UP5];x-x,686-682[BULt]	((((((((.....(((((((((((..&..)))))))))))-----))))))))	UGGUUGGAGACCAUCAAAGGUGAUGG&AAAUCAUUUUUGA-----UCCGAUCA	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN12053_c0_g1_690_TPlot.pdf
TRINITY_DN12053_c0_g1:699	si_s803	TRINITY_DN12053_c0_g1	688	711	699	-26.00	-17.50	0.673076923076923	12.5	1-8,711-704;9-20,700-689	x-x,703-701[BULt];21-21,688-688[UP3]	.((((((((((((...((((((((&))))))))---)))))))))))).	CAAAGGUGAUGGAGUUGAUGGGAU&AUUUUAUC---UUCGUUACCUUUU	3	0.999999999977451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12053_c0_g1_699_TPlot.pdf
TRINITY_DN12053_c0_g1:986	si_s82	TRINITY_DN12053_c0_g1	975	995	986	-28.90	-18.90	0.653979238754325	10.5	3-5,993-991;7-18,989-978	1-2,995-994[UP5];6-6,990-990[SIL];19-21,977-975[UP3]	...((((((((((((.(((..&..))).))))))))))))...	CCCAAGGAGAGAGGACGGAUU&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN12053_c0_g1_986_TPlot.pdf
TRINITY_DN12053_c0_g1:987	si_s81	TRINITY_DN12053_c0_g1	976	996	987	-28.90	-18.90	0.653979238754325	11.5	4-6,993-991;8-19,989-978	1-3,996-994[UP5];7-7,990-990[SIL];20-21,977-976[UP3]	..((((((((((((.(((...&...))).))))))))))))..	CCAAGGAGAGAGGACGGAUUU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN12053_c0_g1_987_TPlot.pdf
TRINITY_DN12053_c0_g1:988	si_s73	TRINITY_DN12053_c0_g1	977	999	988	-24.00	-16.20	0.675	13.5	1-4,999-996;7-8,993-992;9-20,989-978	5-6,995-994[SIL];x-x,991-990[BULt];21-21,977-977[UP3]	.((((((((((((..((..((((&))))..))--)))))))))))).	CAAGGAGAGAGGACGGAUUUGGA&UCUAUUUU--UUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12053_c0_g1_988_TPlot.pdf
TRINITY_DN12053_c0_g1:989	si_s79	TRINITY_DN12053_c0_g1	978	998	989	-26.20	-18.90	0.721374045801527	13	6-8,993-991;10-21,989-978	1-5,998-994[UP5];9-9,990-990[SIL]	((((((((((((.(((.....&.....))).))))))))))))	AAGGAGAGAGGACGGAUUUGG&UUUUUUCUUUCCUUUCUUCUU	2	0.999999999997579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12053_c0_g1_989_TPlot.pdf
TRINITY_DN12053_c0_g1:990	si_s78	TRINITY_DN12053_c0_g1	979	999	990	-26.20	-18.10	0.690839694656489	15	7-9,993-991;11-21,989-979	1-6,999-994[UP5];10-10,990-990[SIL]	(((((((((((.(((......&......))).)))))))))))	AGGAGAGAGGACGGAUUUGGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12053_c0_g1_990_TPlot.pdf
TRINITY_DN12053_c0_g1:992	si_s71	TRINITY_DN12053_c0_g1	979	1001	992	-25.70	-19.20	0.747081712062257	13	1-6,1001-996;9-10,993-992;11-21,989-979	7-8,995-994[SIL];x-x,991-990[BULt]	(((((((((((..((..((((((&))))))..))--)))))))))))	AGGAGAGAGGACGGAUUUGGAGG&CUUCUAUUUU--UUUUCUUUCCU	3	0.999998660078045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12053_c0_g1_992_TPlot.pdf
TRINITY_DN12053_c0_g1:993	si_s70	TRINITY_DN12053_c0_g1	980	1002	993	-25.80	-18.10	0.701550387596899	13.5	2-7,1001-996;10-11,993-992;12-21,989-980	1-1,1002-1002[UP5];8-9,995-994[SIL];x-x,991-990[BULt]	((((((((((..((..((((((.&.))))))..))--))))))))))	GGAGAGAGGACGGAUUUGGAGGG&ACUUCUAUUUU--UUUUCUUUCC	2	0.999999939195905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN12053_c0_g1_993_TPlot.pdf
TRINITY_DN12059_c2_g1:111	si_s79	TRINITY_DN12059_c2_g1	100	120	111	-26.20	-23.40	0.893129770992366	8.5	1-20,120-101	21-21,100-100[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	CAGAGGAAAGGGGGGGGAGGA&UUUUUUCUUUCCUUUCUUCUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12059_c2_g1_111_TPlot.pdf
TRINITY_DN1205_c0_g1:1068	si_a326	TRINITY_DN1205_c0_g1	1057	1077	1068	-26.20	-17.50	0.66793893129771	9.5	1-6,1077-1072;8-9,1070-1069;11-11,1067-1067;14-21,1064-1057	7-7,1071-1071[SIL];10-10,1068-1068[SIL];12-13,1066-1065[SIL]	((((((((..(.((.((((((&)))))).)).)..))))))))	GACGAGGAUGACGAUGAUCAU&AUGAUUUUUUUAUUCCUUGUC	2	0.999994955569811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1205_c0_g1_1068_TPlot.pdf
TRINITY_DN1205_c0_g1:1468	si_a499	TRINITY_DN1205_c0_g1	1457	1485	1468	-35.20	-24.72	0.702272727272727	22	1-6,1485-1480;9-13,1469-1465;15-21,1463-1457	7-8,1479-1470[AILt];14-14,1464-1464[SIL]	(((((((.(((((..........((((((&))))))--------..))))).)))))))	CCAAGGAUGACGAUGGUGUUGAUGACGAC&GUCGUU--------UUUCGUCUUCCUUGG	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1205_c0_g1_1468_TPlot.pdf
TRINITY_DN1205_c0_g1:1720	si_a667	TRINITY_DN1205_c0_g1	1709	1729	1720	-32.10	-21.00	0.654205607476635	11	3-9,1727-1721;12-19,1718-1711	1-2,1729-1728[UP5];10-11,1720-1719[SIL];20-21,1710-1709[UP3]	..((((((((..(((((((..&..)))))))..))))))))..	CAGAUGAGGAUGCAGUAGGAA&UGCCUAUUGAUUCCUUAUUCA	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN1205_c0_g1_1720_TPlot.pdf
TRINITY_DN1205_c0_g1:1836	si_s695	TRINITY_DN1205_c0_g1	1825	1845	1836	-24.70	-16.90	0.684210526315789	11.5	5-18,1841-1828	1-4,1845-1842[UP5];19-21,1827-1825[UP3]	...((((((((((((((....&....))))))))))))))...	GAAGAUAAAUCGACUGACACA&UUAAUUAGUCGAUUUAUUAGU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN1205_c0_g1_1836_TPlot.pdf
TRINITY_DN1205_c0_g1:1960	si_s68	TRINITY_DN1205_c0_g1	1948	1969	1960	-23.10	-16.30	0.705627705627706	10	4-10,1966-1960;11-21,1958-1948	1-3,1969-1967[UP5];x-x,1959-1959[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GAAGAAGAAGAUGUAGAAGAAG&CAACUUCUAU-UUUUUUUCUUU	3	0.999999999557893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1205_c0_g1_1960_TPlot.pdf
TRINITY_DN1205_c0_g1:2106	si_a319	TRINITY_DN1205_c0_g1	2095	2115	2106	-22.40	-14.60	0.651785714285714	7.5	1-6,2115-2110;9-21,2107-2095	7-8,2109-2108[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAUGAAGAAAUCGAAGAUGAA&UUUAUCCAUGAUUUUUUUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1205_c0_g1_2106_TPlot.pdf
TRINITY_DN1205_c0_g1:2115	si_s796	TRINITY_DN1205_c0_g1	2104	2123	2115	-30.30	-22.60	0.745874587458746	6	2-7,2122-2117;9-19,2116-2106	1-1,2123-2123[UP5];8-8,x-x[BULq];20-21,2105-2104[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	AUCGAAGAUGAAA-ACGAGCC&AGCUCGUAUUUUAUCUUCGUU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN1205_c0_g1_2115_TPlot.pdf
TRINITY_DN1205_c0_g1:2117	si_s794	TRINITY_DN1205_c0_g1	2106	2125	2117	-31.20	-22.40	0.717948717948718	7.5	4-9,2122-2117;11-21,2116-2106	1-3,2125-2123[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	CGAAGAUGAAA-ACGAGCCAG&CAAGCUCGUAUUUUAUCUUCG	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN1205_c0_g1_2117_TPlot.pdf
TRINITY_DN1205_c0_g1:2138	si_a68	TRINITY_DN1205_c0_g1	2130	2146	2138	-25.40	-16.70	0.65748031496063	8.5	1-9,2146-2138;14-21,2137-2130	10-13,x-x[BULq]	((((((((----(((((((((&)))))))))....))))))))	UGAAGAAC----UGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1205_c0_g1_2138_TPlot.pdf
TRINITY_DN1205_c0_g1:2144	si_a785	TRINITY_DN1205_c0_g1	2131	2154	2144	-25.90	-18.10	0.698841698841699	9	1-7,2154-2148;9-16,2145-2138;17-21,2135-2131	8-8,2147-2146[AILt];x-x,2137-2136[BULt]	(((((..((((((((..(((((((&)))))))-.))))))))--)))))	GAAGAACUGGAAGAAGAGGAAGAG&CUCUUCU-AUUUUUCUA--UUUUC	3	0.999999999413034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1205_c0_g1_2144_TPlot.pdf
TRINITY_DN1205_c0_g1:2145	si_a784	TRINITY_DN1205_c0_g1	2133	2155	2145	-24.70	-16.40	0.663967611336032	9	2-8,2154-2148;10-17,2145-2138;18-21,2136-2133	1-1,2155-2155[UP5];9-9,2147-2146[AILt];x-x,2137-2137[BULt]	((((.((((((((..(((((((.&.)))))))-.))))))))-))))	AGAACUGGAAGAAGAGGAAGAGG&ACUCUUCU-AUUUUUCUA-UUUU	2	0.999999999997753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1205_c0_g1_2145_TPlot.pdf
TRINITY_DN1205_c0_g1:2146	si_a783	TRINITY_DN1205_c0_g1	2135	2156	2146	-24.70	-16.40	0.663967611336032	12	3-9,2154-2148;11-18,2145-2138	1-2,2156-2155[UP5];10-10,2147-2146[AILt];19-21,2137-2135[UP3]	...((((((((..(((((((..&..)))))))-.))))))))...	AACUGGAAGAAGAGGAAGAGGA&AACUCUUCU-AUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1205_c0_g1_2146_TPlot.pdf
TRINITY_DN1205_c0_g1:2147	si_s87	TRINITY_DN1205_c0_g1	2136	2157	2147	-32.90	-22.90	0.696048632218845	8	1-7,2157-2151;8-17,2149-2140	x-x,2150-2150[BULt];18-21,2139-2136[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	ACUGGAAGAAGAGGAAGAGGAA&UUCCUUU-CUUCUUCUUCGCUU	3	0.999999999996046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1205_c0_g1_2147_TPlot.pdf
TRINITY_DN1205_c0_g1:2148	si_s86	TRINITY_DN1205_c0_g1	2137	2158	2148	-32.90	-23.10	0.702127659574468	8	2-8,2157-2151;9-18,2149-2140	1-1,2158-2158[UP5];x-x,2150-2150[BULt];19-21,2139-2137[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	CUGGAAGAAGAGGAAGAGGAAG&UUUCCUUU-CUUCUUCUUCGCU	2	0.999999248719406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1205_c0_g1_2148_TPlot.pdf
TRINITY_DN1205_c0_g1:2150	si_s84	TRINITY_DN1205_c0_g1	2139	2159	2150	-32.30	-24.60	0.761609907120743	6	1-6,2159-2154;8-20,2152-2140	7-7,2153-2153[SIL];21-21,2139-2139[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	GGAAGAAGAGGAAGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1205_c0_g1_2150_TPlot.pdf
TRINITY_DN1205_c0_g1:2151	si_s83	TRINITY_DN1205_c0_g1	2140	2160	2151	-30.90	-24.90	0.805825242718447	4.5	1-7,2160-2154;9-21,2152-2140	8-8,2153-2153[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAAGAAGAGGAAGAGGAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1205_c0_g1_2151_TPlot.pdf
TRINITY_DN1205_c0_g1:2152	si_s82	TRINITY_DN1205_c0_g1	2141	2161	2152	-28.90	-21.90	0.757785467128028	5.5	2-8,2160-2154;10-21,2152-2141	1-1,2161-2161[UP5];9-9,2153-2153[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	AAGAAGAGGAAGAGGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	2	0.999978361284052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1205_c0_g1_2152_TPlot.pdf
TRINITY_DN1205_c0_g1:2153	si_s81	TRINITY_DN1205_c0_g1	2142	2162	2153	-28.90	-22.70	0.785467128027682	5.5	1-9,2162-2154;11-21,2152-2142	10-10,2153-2153[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AGAAGAGGAAGAGGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	2	0.997190032184006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1205_c0_g1_2153_TPlot.pdf
TRINITY_DN1205_c0_g1:2154	si_s80	TRINITY_DN1205_c0_g1	2143	2163	2154	-28.20	-22.10	0.783687943262411	5.5	1-10,2163-2154;12-21,2152-2143	11-11,2153-2153[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	GAAGAGGAAGAGGAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	2	0.998582868378132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1205_c0_g1_2154_TPlot.pdf
TRINITY_DN1205_c0_g1:2155	si_s79	TRINITY_DN1205_c0_g1	2144	2164	2155	-26.20	-19.00	0.725190839694656	6	2-11,2163-2154;13-21,2152-2144	1-1,2164-2164[UP5];12-12,2153-2153[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AAGAGGAAGAGGAAGAAGAAC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1205_c0_g1_2155_TPlot.pdf
TRINITY_DN1205_c0_g1:2157	si_a497	TRINITY_DN1205_c0_g1	2146	2166	2157	-32.00	-22.60	0.70625	7.5	1-4,2166-2163;7-12,2160-2155;14-21,2153-2146	5-6,2162-2161[SIL];13-13,2154-2154[SIL]	((((((((.((((((..((((&))))..)))))).))))))))	GAGGAAGAGGAAGAAGAACGU&AUGUCGUUUUUCGUCUUCCUU	2	0.999788942765203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1205_c0_g1_2157_TPlot.pdf
TRINITY_DN1205_c0_g1:2158	si_a496	TRINITY_DN1205_c0_g1	2147	2167	2158	-32.40	-22.00	0.679012345679012	7.5	1-5,2167-2163;8-13,2160-2155;15-21,2153-2147	6-7,2162-2161[SIL];14-14,2154-2154[SIL]	(((((((.((((((..(((((&)))))..)))))).)))))))	AGGAAGAGGAAGAAGAACGUG&UAUGUCGUUUUUCGUCUUCCU	3	0.999999970199631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1205_c0_g1_2158_TPlot.pdf
TRINITY_DN1205_c0_g1:2205	si_s86	TRINITY_DN1205_c0_g1	2193	2215	2205	-32.90	-22.80	0.693009118541034	7.5	2-7,2214-2209;8-19,2207-2196;20-20,2194-2194	1-1,2215-2215[UP5];x-x,2208-2208[BULt];x-x,2195-2195[BULt];21-21,2193-2193[UP3]	.(.((((((((((((.((((((.&.))))))-))))))))))))-).	CGAUGAAGAAGGAGACGAGGAAG&UUUCCUU-UCUUCUUCUUCG-CU	4	0.999999999999124	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1205_c0_g1_2205_TPlot.pdf
TRINITY_DN1205_c0_g1:2213	si_a504	TRINITY_DN1205_c0_g1	2202	2222	2213	-32.90	-23.30	0.708206686930091	7.5	1-15,2222-2208	16-21,2207-2202[UP3]	......(((((((((((((((&)))))))))))))))......	AGGAGACGAGGAAGACGAAGA&UUUUCGUCUUCCUUGGAAUGU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN1205_c0_g1_2213_TPlot.pdf
TRINITY_DN1205_c0_g1:2214	si_a503	TRINITY_DN1205_c0_g1	2203	2223	2214	-32.10	-23.50	0.73208722741433	7.5	2-16,2222-2208	1-1,2223-2223[UP5];17-21,2207-2203[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GGAGACGAGGAAGACGAAGAU&UUUUUCGUCUUCCUUGGAAUG	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1205_c0_g1_2214_TPlot.pdf
TRINITY_DN1205_c0_g1:3801	si_s82	TRINITY_DN1205_c0_g1	3791	3810	3801	-28.90	-19.10	0.660899653979239	7	1-13,3810-3798;16-17,3795-3794;19-21,3793-3791	14-15,3797-3796[SIL];18-18,x-x[BULq]	(((-((..(((((((((((((&)))))))))))))..)).)))	AAG-AGUUGGAAGGAAGGGGA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1205_c0_g1_3801_TPlot.pdf
TRINITY_DN1205_c0_g1:3803	si_s76	TRINITY_DN1205_c0_g1	3791	3812	3803	-23.60	-16.90	0.716101694915254	8.5	2-15,3811-3798;17-21,3795-3791	1-1,3812-3812[UP5];16-16,3797-3796[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	AAGAGUUGGAAGGAAGGGGAAC&AUUUUUUUUCUUUCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1205_c0_g1_3803_TPlot.pdf
TRINITY_DN1205_c0_g1:3808	si_s75	TRINITY_DN1205_c0_g1	3797	3817	3808	-24.00	-16.60	0.691666666666667	15.5	7-20,3811-3798	1-6,3817-3812[UP5];21-21,3797-3797[UP3]	.((((((((((((((......&......)))))))))))))).	UGGAAGGAAGGGGAACUGUUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1205_c0_g1_3808_TPlot.pdf
TRINITY_DN1205_c0_g1:570	si_s247	TRINITY_DN1205_c0_g1	559	579	570	-31.70	-21.20	0.668769716088328	10.5	4-9,576-571;11-21,569-559	1-3,579-577[UP5];10-10,570-570[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAUAUGUCGGGUGAUGUUCAG&AUAGGCAUUUCCCGAUAUAUU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN1205_c0_g1_570_TPlot.pdf
TRINITY_DN1205_c2_g1:5182	si_s422	TRINITY_DN1205_c2_g1	5171	5191	5182	-21.30	-13.90	0.652582159624413	10	1-11,5191-5181;13-17,5179-5175	12-12,5180-5180[SIL];18-21,5174-5171[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UAUGAUUGUAGUAUGGGGUAU&AUAUUCUAUAUAACAAUAAUU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN1205_c2_g1_5182_TPlot.pdf
TRINITY_DN1205_c2_g1:5660	si_a416	TRINITY_DN1205_c2_g1	5647	5669	5660	-20.50	-13.78	0.672195121951219	9	1-15,5669-5655;18-21,5650-5647	16-17,5654-5651[AILt]	((((....(((((((((((((((&)))))))))))))))--..))))	CCUGGGGCUUUGUUUGGAUGUAG&UUAUAUUUAAAUAAA--UAUAGG	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN1205_c2_g1_5660_TPlot.pdf
TRINITY_DN1205_c2_g1:6095	si_s558	TRINITY_DN1205_c2_g1	6084	6105	6095	-28.20	-18.50	0.656028368794326	11	1-4,6105-6102;7-15,6098-6090;17-21,6088-6084	5-6,6101-6099[AILt];16-16,6089-6089[SIL]	(((((.(((((((((...((((&))))-..))))))))).)))))	UUGUCGCGAGGGUAUCUUGUUC&GAAU-UAAUAUUUUCGGGACAA	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN1205_c2_g1_6095_TPlot.pdf
TRINITY_DN1205_c2_g1:6157	si_a410	TRINITY_DN1205_c2_g1	6146	6170	6157	-17.80	-11.70	0.657303370786517	14	3-6,6168-6165;7-21,6160-6146	1-2,6170-6169[UP5];x-x,6164-6161[BULt]	(((((((((((((((....((((..&..))))----)))))))))))))))	UUUGUUUGAAUAUAACUGGGCAGUU&UUUUGU----UUAUAUUUAAAUAAA	2	0.999999999677668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1205_c2_g1_6157_TPlot.pdf
TRINITY_DN12066_c0_g1:146	si_s70	TRINITY_DN12066_c0_g1	134	156	146	-25.80	-17.50	0.678294573643411	7.5	1-7,156-150;9-19,147-137;20-21,135-134	8-8,149-148[AILt];x-x,136-136[BULt]	((.(((((((((((..(((((((&)))))))-.)))))))))))-))	GGAAAAGGAAAAAGUCUAGAGGU&ACUUCUA-UUUUUUUUCUUU-CC	2	0.999999999992939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN12066_c0_g1_146_TPlot.pdf
TRINITY_DN1206_c0_g1:7247	si_s201	TRINITY_DN1206_c0_g1	7236	7257	7247	-33.60	-24.40	0.726190476190476	9	4-7,7254-7251;8-19,7249-7238	1-3,7257-7255[UP5];x-x,7250-7250[BULt];20-21,7237-7236[UP3]	..((((((((((((.((((...&...))))-))))))))))))..	CGACAACUGGUACACUUCCUAU&UUUGGAA-UGUACCAGUUGUGU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN1206_c0_g1_7247_TPlot.pdf
TRINITY_DN12074_c0_g1:43	si_s80	TRINITY_DN12074_c0_g1	32	50	43	-28.20	-18.50	0.656028368794326	7.5	1-6,50-45;9-19,44-34	7-8,x-x[BULq];20-21,33-32[UP3]	..(((((((((((--((((((&))))))..)))))))))))..	AUGGAAGAAAGGA--GAAAGA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN12074_c0_g1_43_TPlot.pdf
TRINITY_DN12074_c0_g1:465	si_a36	TRINITY_DN12074_c0_g1	449	474	465	-37.80	-26.50	0.701058201058201	8	1-13,474-462;14-19,456-451	x-x,461-457[BULt];20-21,450-449[UP3]	..((((((.....(((((((((((((&)))))))))))))-----))))))..	AAAGACCUCCAAAAUCGGUCUUAGAA&UUCUAAGACCGGU-----AGGUCUAG	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a36_TRINITY_DN12074_c0_g1_465_TPlot.pdf
TRINITY_DN12075_c0_g1:1002	si_a808	TRINITY_DN12075_c0_g1	991	1012	1002	-34.90	-25.80	0.739255014326648	6	1-8,1012-1005;10-19,1002-993	9-9,1004-1003[AILt];20-21,992-991[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	CACUUCUUCUUCUUCUUCGGAU&AUCCGAAG-CGAAGAAGAAGAA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN12075_c0_g1_1002_TPlot.pdf
TRINITY_DN12076_c0_g1:446	si_s6	TRINITY_DN12076_c0_g1	436	455	446	-21.70	-14.50	0.668202764976959	7	1-12,455-444;14-18,443-439	13-13,x-x[BULq];19-21,438-436[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	GUAGGUGA-AAUGAGUGAUAU&AUAUUACUUAUUAUUACUAUA	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN12076_c0_g1_446_TPlot.pdf
TRINITY_DN12078_c0_g1:164	si_a72	TRINITY_DN12078_c0_g1	154	173	164	-21.90	-14.40	0.657534246575343	8.5	3-14,171-160;16-19,159-156	1-2,173-172[UP5];15-15,x-x[BULq];20-21,155-154[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	AAAGUG-AAGACGAUUUGACU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999999953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN12078_c0_g1_164_TPlot.pdf
TRINITY_DN12087_c1_g1:13	si_a551	TRINITY_DN12087_c1_g1	2	22	13	-31.60	-24.50	0.775316455696202	7	3-9,20-14;11-21,12-2	1-2,22-21[UP5];10-10,13-13[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GGGGAGAUAAACAAGUGGACA&AAUCUAUUUCUUUAUCUCCCC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN12087_c1_g1_13_TPlot.pdf
TRINITY_DN12088_c0_g1:1390	si_a835	TRINITY_DN12088_c0_g1	1379	1401	1390	-26.00	-18.20	0.7	8	1-6,1401-1396;8-20,1392-1380	7-7,1395-1393[AILt];21-21,1379-1379[UP3]	.(((((((((((((...((((((&))))))--.))))))))))))).	CGGCAAUUUCUAUUCUGUUUUUC&GAAAAA--AAAUAGAAGUUGCUA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN12088_c0_g1_1390_TPlot.pdf
TRINITY_DN12088_c0_g2:325	si_a410	TRINITY_DN12088_c0_g2	315	334	325	-17.80	-12.20	0.685393258426966	6.5	2-14,333-321;17-21,319-315	1-1,334-334[UP5];15-16,320-320[AILq]	(((((.-(((((((((((((.&.)))))))))))))..)))))	UUUGUG-AAAUAUAGGCAGAU&UUUUGUUUAUAUUUAAAUAAA	2	0.999996395299518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN12088_c0_g2_325_TPlot.pdf
TRINITY_DN12088_c0_g3:3543	si_a323	TRINITY_DN12088_c0_g3	3532	3555	3543	-26.80	-17.80	0.664179104477612	12	2-4,3554-3552;5-8,3548-3545;11-21,3542-3532	1-1,3555-3555[UP5];x-x,3551-3549[BULt];9-10,3544-3543[SIL]	(((((((((((..((((...(((.&.)))---))))..)))))))))))	GAGGAAUGAAAUUAUCACUUUGGU&UCCA---UGAUUUUUUUAUUCCUU	2	0.999947639071055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN12088_c0_g3_3543_TPlot.pdf
TRINITY_DN1208_c0_g2:1881	si_s2	TRINITY_DN1208_c0_g2	1869	1890	1881	-20.50	-13.80	0.673170731707317	10	1-7,1890-1884;10-15,1881-1876;16-21,1874-1869	8-9,1883-1882[SIL];x-x,1875-1875[BULt]	((((((.((((((..(((((((&)))))))..))))))-))))))	GUAGUGUGUGAGUUUUGUGGAA&UUUUAUAUUACUUAU-UAUUAC	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN1208_c0_g2_1881_TPlot.pdf
TRINITY_DN1208_c0_g2:2227	si_s580	TRINITY_DN1208_c0_g2	2213	2236	2227	-24.40	-16.60	0.680327868852459	8	1-8,2236-2229;10-12,2227-2225;13-21,2221-2213	9-9,2228-2228[SIL];x-x,2224-2222[BULt]	(((((((((...(((.((((((((&)))))))).)))---)))))))))	UUAUCCAUGUACAUUAUUUUAUUC&GAAUAAAAAAAU---CAUGGAUAA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN1208_c0_g2_2227_TPlot.pdf
TRINITY_DN120_c0_g1:2047	si_a72	TRINITY_DN120_c0_g1	2036	2056	2047	-21.90	-14.80	0.675799086757991	5	1-15,2056-2042;17-19,2040-2038	16-16,2041-2041[SIL];20-21,2037-2036[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UAGAUUAGAAACGAUUUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999600452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN120_c0_g1_2047_TPlot.pdf
TRINITY_DN12102_c0_g1:165	si_s435	TRINITY_DN12102_c0_g1	154	174	165	-20.90	-14.60	0.698564593301435	11	3-6,172-169;9-21,166-154	1-2,174-173[UP5];7-8,168-167[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	AUGUGUGGUGUGUUUUUGUAA&CAAUAAUUACAUAUUAUAUAU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN12102_c0_g1_165_TPlot.pdf
TRINITY_DN1210_c0_g2:1051	si_s83	TRINITY_DN1210_c0_g2	1041	1060	1051	-30.90	-21.60	0.699029126213592	2.5	1-14,1060-1047;16-20,1046-1042	15-15,x-x[BULq];21-21,1041-1041[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	CAGGAA-AAGAAAGGAAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1210_c0_g2_1051_TPlot.pdf
TRINITY_DN1210_c0_g2:1053	si_s81	TRINITY_DN1210_c0_g2	1042	1062	1053	-28.90	-21.90	0.757785467128028	3.5	2-16,1061-1047;18-21,1045-1042	1-1,1062-1062[UP5];17-17,1046-1046[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	AGGAAAAGAAAGGAAAGAAGU&UUUUCUUUCCUUUCUUCUUCU	4	0.999999917251805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1210_c0_g2_1053_TPlot.pdf
TRINITY_DN1210_c0_g2:1056	si_s78	TRINITY_DN1210_c0_g2	1045	1065	1056	-26.20	-19.00	0.725190839694656	10	5-19,1061-1047	1-4,1065-1062[UP5];20-21,1046-1045[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAGAAAGGAAAGAAGUUAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1210_c0_g2_1056_TPlot.pdf
TRINITY_DN1210_c0_g2:1058	si_s76	TRINITY_DN1210_c0_g2	1047	1067	1058	-23.60	-19.00	0.805084745762712	12	7-21,1061-1047	1-6,1067-1062[UP5]	(((((((((((((((......&......)))))))))))))))	AAGAAAGGAAAGAAGUUAAUG&AUUUUUUUUCUUUCCUUUCUU	2	0.999732637295738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1210_c0_g2_1058_TPlot.pdf
TRINITY_DN1210_c0_g2:1060	si_s74	TRINITY_DN1210_c0_g2	1049	1068	1060	-25.00	-19.50	0.78	8	1-5,1068-1064;9-21,1061-1049	6-8,1063-1062[AILq]	(((((((((((((..-(((((&)))))...)))))))))))))	GAAAGGAAAGAAGUU-AAUGG&CUAUUUUUUUUCUUUCCUUUC	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1210_c0_g2_1060_TPlot.pdf
TRINITY_DN1210_c0_g2:1061	si_s73	TRINITY_DN1210_c0_g2	1050	1069	1061	-24.00	-17.70	0.7375	8	1-6,1069-1064;10-21,1061-1050	7-9,1063-1062[AILq]	((((((((((((..-((((((&))))))...))))))))))))	AAAGGAAAGAAGUU-AAUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1210_c0_g2_1061_TPlot.pdf
TRINITY_DN1210_c0_g2:1094	si_a779	TRINITY_DN1210_c0_g2	1082	1103	1094	-27.00	-17.60	0.651851851851852	5.5	2-13,1102-1091;15-16,1089-1088;18-21,1085-1082	1-1,1103-1103[UP5];14-14,1090-1090[SIL];17-17,1087-1086[AILt]	((((..((.((((((((((((.&.)))))))))))).))-.))))	GGAACUAAAAGAAGAGUUGGAG&AUUCAACUCUUCUAUU-UUUCU	4	0.999999990721386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1210_c0_g2_1094_TPlot.pdf
TRINITY_DN1210_c0_g3:990	si_a764	TRINITY_DN1210_c0_g3	980	999	990	-28.90	-19.00	0.657439446366782	8	3-13,997-987;15-20,986-981	1-2,999-998[UP5];14-14,x-x[BULq];21-21,980-980[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CUGGAUC-GUCAAGAACUCUU&UUGGGUUUUUGAUUGAUUCAA	4	0.99999999196975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1210_c0_g3_990_TPlot.pdf
TRINITY_DN1210_c0_g5:152	si_s169	TRINITY_DN1210_c0_g5	142	159	152	-44.00	-28.90	0.656818181818182	7.5	1-3,159-157;5-9,156-152;12-21,151-142	4-4,x-x[BULq];10-11,x-x[BULq]	((((((((((--(((((-(((&))).)))))..))))))))))	UCGGGCAUCU--AUCCC-GGU&GCCAGGGGUAAAGAUGCCCGA	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s169_TRINITY_DN1210_c0_g5_152_TPlot.pdf
TRINITY_DN1210_c0_g5:383	si_s505	TRINITY_DN1210_c0_g5	372	392	383	-24.70	-18.10	0.732793522267207	11	6-20,387-373	1-5,392-388[UP5];21-21,372-372[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAGAGUAUGGAAUUGUGCAAC&ACAAAACAAUUCUAUAUUCUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN1210_c0_g5_383_TPlot.pdf
TRINITY_DN1210_c0_g5:862	si_s803	TRINITY_DN1210_c0_g5	851	875	862	-26.00	-18.60	0.715384615384615	14.5	1-9,875-867;10-19,862-853	x-x,866-863[BULt];20-21,852-851[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	ACAGGGUGGCGAAAAUAGGUGAAGU&AUUUUAUCU----UCGUUACCUUUU	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1210_c0_g5_862_TPlot.pdf
TRINITY_DN1210_c3_g1:122	si_a844	TRINITY_DN1210_c3_g1	110	131	122	-29.20	-19.60	0.671232876712329	6.5	1-11,131-121;13-21,118-110	12-12,120-119[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AUUUUGAGUGAAGCAACUUUUG&UAGAAGUUGCU-AACUUGAAAU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN1210_c3_g1_122_TPlot.pdf
TRINITY_DN1210_c3_g1:125	si_a841	TRINITY_DN1210_c3_g1	113	134	125	-29.20	-19.50	0.667808219178082	6	2-14,133-121;16-21,118-113	1-1,134-134[UP5];15-15,120-119[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	UUGAGUGAAGCAACUUUUGUUA&AAAUAGAAGUUGCU-AACUUGA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN1210_c3_g1_125_TPlot.pdf
TRINITY_DN12116_c0_g1:983	si_a404	TRINITY_DN12116_c0_g1	972	992	983	-21.70	-15.30	0.705069124423963	8	1-5,992-988;7-18,986-975	6-6,987-987[SIL];19-21,974-972[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CUCAUGUAGAUAAGAGAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999654833138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN12116_c0_g1_983_TPlot.pdf
TRINITY_DN12117_c0_g1:418	si_s75	TRINITY_DN12117_c0_g1	407	426	418	-24.00	-15.60	0.65	8.5	1-5,426-422;8-19,420-409	6-7,421-421[AILq];20-21,408-407[UP3]	..((((((((((((.-(((((&)))))..))))))))))))..	AAAAAGGAGAGAGAU-AGAUA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12117_c0_g1_418_TPlot.pdf
TRINITY_DN12117_c0_g1:419	si_s74	TRINITY_DN12117_c0_g1	408	427	419	-25.00	-18.80	0.752	7.5	1-6,427-422;9-20,420-409	7-8,421-421[AILq];21-21,408-408[UP3]	.((((((((((((.-((((((&))))))..)))))))))))).	AAAAGGAGAGAGAU-AGAUAG&CUAUUUUUUUUCUUUCCUUUC	4	0.999997606512646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12117_c0_g1_419_TPlot.pdf
TRINITY_DN12117_c0_g1:420	si_s73	TRINITY_DN12117_c0_g1	409	428	420	-24.00	-19.00	0.791666666666667	7	1-7,428-422;10-21,420-409	8-9,421-421[AILq]	((((((((((((.-(((((((&)))))))..))))))))))))	AAAGGAGAGAGAU-AGAUAGG&UCUAUUUUUUUUCUUUCCUUU	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12117_c0_g1_420_TPlot.pdf
TRINITY_DN12117_c0_g1:422	si_s71	TRINITY_DN12117_c0_g1	411	430	422	-25.70	-20.80	0.809338521400778	8	1-9,430-422;12-21,420-411	10-11,421-421[AILq]	((((((((((.-(((((((((&)))))))))..))))))))))	AGGAGAGAGAU-AGAUAGGGG&CUUCUAUUUUUUUUCUUUCCU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12117_c0_g1_422_TPlot.pdf
TRINITY_DN12117_c0_g1:423	si_s69	TRINITY_DN12117_c0_g1	413	432	423	-23.40	-16.20	0.692307692307692	10	3-11,430-422;14-21,420-413	1-2,432-431[UP5];12-13,421-421[AILq]	((((((((.-(((((((((..&..)))))))))..))))))))	GAGAGAGAU-AGAUAGGGGAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN12117_c0_g1_423_TPlot.pdf
TRINITY_DN12120_c0_g1:627	si_a405	TRINITY_DN12120_c0_g1	616	636	627	-19.80	-14.80	0.747474747474748	8	2-11,635-626;14-20,623-617	1-1,636-636[UP5];12-13,625-624[SIL];21-21,616-616[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	GUGGAUAUUUGCAGAACAAUA&AAUUGUUUUGUUUAUAUUUAA	4	0.999990258141989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN12120_c0_g1_627_TPlot.pdf
TRINITY_DN12123_c1_g1:317	si_s75	TRINITY_DN12123_c1_g1	306	326	317	-24.00	-18.00	0.75	7	3-17,324-310;20-21,307-306	1-2,326-325[UP5];18-19,309-308[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	AGCUAGGAAAGAAAGAAGAAG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999971337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12123_c1_g1_317_TPlot.pdf
TRINITY_DN1212_c0_g1:872	si_s515	TRINITY_DN1212_c0_g1	858	881	872	-24.80	-19.90	0.80241935483871	7	1-15,881-867;16-21,863-858	x-x,866-864[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GUUUCGGUGGAUUAGGAGUAUGGA&UCUAUAUUCUUAAUU---CGAAAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN1212_c0_g1_872_TPlot.pdf
TRINITY_DN1212_c0_g1:934	si_a429	TRINITY_DN1212_c0_g1	919	944	934	-32.00	-21.30	0.665625	14	2-7,943-938;8-12,936-932;13-19,927-921	1-1,944-944[UP5];x-x,937-937[BULt];x-x,931-928[BULt];20-21,920-919[UP3]	..(((((((....(((((.((((((.&.))))))-)))))----)))))))..	AGGUCCAGCAGAUGGAUCUCUAUAUA&AAUAUAG-GAUCC----GUUGGAUAU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN1212_c0_g1_934_TPlot.pdf
TRINITY_DN1212_c0_g1:935	si_a428	TRINITY_DN1212_c0_g1	920	945	935	-31.80	-21.30	0.669811320754717	11	3-8,943-938;9-13,936-932;14-20,927-921	1-2,945-944[UP5];x-x,937-937[BULt];x-x,931-928[BULt];21-21,920-920[UP3]	.(((((((....(((((.((((((..&..))))))-)))))----))))))).	GGUCCAGCAGAUGGAUCUCUAUAUAU&AAAUAUAG-GAUCC----GUUGGAUA	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN1212_c0_g1_935_TPlot.pdf
TRINITY_DN12133_c0_g1:1323	si_a413	TRINITY_DN12133_c0_g1	1312	1332	1323	-18.40	-12.40	0.673913043478261	5.5	1-11,1332-1322;13-18,1320-1315	12-12,1321-1321[SIL];19-21,1314-1312[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UAUUUUGUUAAAAUAUAAACA&UGUUUAUAUUUAAAUAAAUAU	2	0.996116359839343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN12133_c0_g1_1323_TPlot.pdf
TRINITY_DN12133_c0_g1:1324	si_a412	TRINITY_DN12133_c0_g1	1313	1333	1324	-18.30	-13.30	0.726775956284153	3.5	1-12,1333-1322;14-19,1320-1315	13-13,1321-1321[SIL];20-21,1314-1313[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AUUUUGUUAAAAUAUAAACAA&UUGUUUAUAUUUAAAUAAAUA	0	0.105567855984475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN12133_c0_g1_1324_TPlot.pdf
TRINITY_DN12133_c0_g1:1325	si_a411	TRINITY_DN12133_c0_g1	1314	1334	1325	-17.90	-14.20	0.793296089385475	2.5	1-13,1334-1322;15-20,1320-1315	14-14,1321-1321[SIL];21-21,1314-1314[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UUUUGUUAAAAUAUAAACAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN12133_c0_g1_1325_TPlot.pdf
TRINITY_DN12133_c0_g1:1326	si_a410	TRINITY_DN12133_c0_g1	1315	1335	1326	-17.80	-15.00	0.842696629213483	1.5	1-14,1335-1322;16-21,1320-1315	15-15,1321-1321[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UUUGUUAAAAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN12133_c0_g1_1326_TPlot.pdf
TRINITY_DN12133_c0_g1:1327	si_a409	TRINITY_DN12133_c0_g1	1316	1336	1327	-19.50	-14.10	0.723076923076923	2.5	2-15,1335-1322;17-21,1320-1316	1-1,1336-1336[UP5];16-16,1321-1321[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	UUGUUAAAAUAUAAACAAAAA&GUUUUGUUUAUAUUUAAAUAA	2	0.997549565409419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN12133_c0_g1_1327_TPlot.pdf
TRINITY_DN12133_c0_g1:1328	si_a408	TRINITY_DN12133_c0_g1	1317	1337	1328	-20.10	-13.20	0.656716417910448	4.5	3-16,1335-1322;18-21,1320-1317	1-2,1337-1336[UP5];17-17,1321-1321[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UGUUAAAAUAUAAACAAAAAU&UGUUUUGUUUAUAUUUAAAUA	2	0.999999996776828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN12133_c0_g1_1328_TPlot.pdf
TRINITY_DN12138_c0_g2:1127	si_a446	TRINITY_DN12138_c0_g2	1115	1136	1127	-25.50	-16.90	0.662745098039216	7.5	2-7,1135-1130;10-14,1127-1123;15-21,1121-1115	1-1,1136-1136[UP5];8-9,1129-1128[SIL];x-x,1122-1122[BULt]	(((((((.(((((..((((((.&.))))))..)))))-)))))))	GUAACGAUCGAUUUGCUCAUAG&AUAUGAGAUAAUUG-UUGUUAU	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN12138_c0_g2_1127_TPlot.pdf
TRINITY_DN1213_c0_g1:3533	si_a409	TRINITY_DN1213_c0_g1	3523	3542	3533	-19.50	-12.80	0.656410256410256	8	1-11,3542-3532;14-20,3530-3524	12-13,3531-3531[AILq];21-21,3523-3523[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	AUAUUUAAC-AUGGACGAGAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1213_c0_g1_3533_TPlot.pdf
TRINITY_DN1213_c0_g1:3553	si_a142	TRINITY_DN1213_c0_g1	3542	3562	3553	-23.50	-16.30	0.693617021276596	12.5	6-20,3557-3543	1-5,3562-3558[UP5];21-21,3542-3542[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUGGAAUAACAACGGUCCAAG&AAUUAAUCGUUGUUGUUUUAA	2	0.999944277087014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1213_c0_g1_3553_TPlot.pdf
TRINITY_DN1213_c0_g1:4502	si_s67	TRINITY_DN1213_c0_g1	4491	4511	4502	-25.60	-18.20	0.7109375	8.5	1-2,4511-4510;5-10,4507-4502;12-20,4500-4492	3-4,4509-4508[SIL];11-11,4501-4501[SIL];21-21,4491-4491[UP3]	.(((((((((.((((((..((&))..)))))).))))))))).	CGGGAAAGAAUUAGAAGCGGC&GCAACUUCUAUUUUUUUUCUU	4	0.999974296613986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1213_c0_g1_4502_TPlot.pdf
TRINITY_DN1213_c0_g1:4503	si_s66	TRINITY_DN1213_c0_g1	4492	4512	4503	-26.30	-19.60	0.745247148288973	7.5	1-3,4512-4510;6-11,4507-4502;13-21,4500-4492	4-5,4509-4508[SIL];12-12,4501-4501[SIL]	(((((((((.((((((..(((&)))..)))))).)))))))))	GGGAAAGAAUUAGAAGCGGCU&AGCAACUUCUAUUUUUUUUCU	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN1213_c0_g1_4503_TPlot.pdf
TRINITY_DN1213_c0_g1:4912	si_a124	TRINITY_DN1213_c0_g1	4901	4922	4912	-25.10	-19.60	0.780876494023904	5	1-9,4922-4914;10-18,4912-4904	x-x,4913-4913[BULt];19-21,4903-4901[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	GUGACUAUUGCUCAUAAAACAA&UUGUUUUAU-AGCAAUAGUAAU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN1213_c0_g1_4912_TPlot.pdf
TRINITY_DN1213_c0_g1:4915	si_a122	TRINITY_DN1213_c0_g1	4903	4924	4915	-29.00	-19.80	0.682758620689655	6	3-11,4922-4914;12-20,4912-4904	1-2,4924-4923[UP5];x-x,4913-4913[BULt];21-21,4903-4903[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	GACUAUUGCUCAUAAAACAAUU&GCUUGUUUUAU-AGCAAUAGUA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN1213_c0_g1_4915_TPlot.pdf
TRINITY_DN1213_c0_g2:924	si_a793	TRINITY_DN1213_c0_g2	914	934	924	-28.50	-18.80	0.659649122807018	4	1-9,934-926;10-14,924-920;17-21,918-914	x-x,925-925[BULt];15-16,919-919[AILq]	(((((.-(((((.(((((((((&)))))))))-)))))..)))))	UCGGAC-GGAAAUAUAGAAAAA&UUUUUCUAU-UUUCCAAUCCGA	3	0.999996002057448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN1213_c0_g2_924_TPlot.pdf
TRINITY_DN12142_c0_g1:775	si_s430	TRINITY_DN12142_c0_g1	763	785	775	-21.30	-13.90	0.652582159624413	8.5	1-6,785-780;7-16,778-769;17-20,767-764	x-x,779-779[BULt];x-x,768-768[BULt];21-21,763-763[UP3]	.((((.((((((((((.((((((&))))))-))))))))))-)))).	AGGUGCUGUAGUUGUUAGUUGUA&UAUAAC-AAUAAUUACA-UAUUA	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN12142_c0_g1_775_TPlot.pdf
TRINITY_DN12142_c0_g1:776	si_s429	TRINITY_DN12142_c0_g1	764	786	776	-21.10	-14.70	0.696682464454976	7	1-7,786-780;8-17,778-769;18-21,767-764	x-x,779-779[BULt];x-x,768-768[BULt]	((((.((((((((((.(((((((&)))))))-))))))))))-))))	GGUGCUGUAGUUGUUAGUUGUAU&AUAUAAC-AAUAAUUACA-UAUU	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN12142_c0_g1_776_TPlot.pdf
TRINITY_DN12142_c0_g1:777	si_s428	TRINITY_DN12142_c0_g1	766	787	777	-21.50	-15.60	0.725581395348837	7.5	1-8,787-780;9-18,778-769	x-x,779-779[BULt];19-21,768-766[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	UGCUGUAGUUGUUAGUUGUAUA&UAUAUAAC-AAUAAUUACAUAU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN12142_c0_g1_777_TPlot.pdf
TRINITY_DN12142_c0_g1:778	si_s427	TRINITY_DN12142_c0_g1	767	788	778	-23.00	-15.70	0.682608695652174	7.5	2-9,787-780;10-19,778-769	1-1,788-788[UP5];x-x,779-779[BULt];20-21,768-767[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	GCUGUAGUUGUUAGUUGUAUAC&CUAUAUAAC-AAUAAUUACAUA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN12142_c0_g1_778_TPlot.pdf
TRINITY_DN12143_c0_g1:699	si_s67	TRINITY_DN12143_c0_g1	687	708	699	-25.60	-17.70	0.69140625	5.5	1-4,708-705;6-17,703-692;18-21,690-687	5-5,704-704[SIL];x-x,691-691[BULt]	((((.((((((((((((.((((&)))).))))))))))))-))))	GAGAUAAAAAGAUGGAACUUGC&GCAACUUCUAUUUUUUU-UCUU	3	0.999999750333462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN12143_c0_g1_699_TPlot.pdf
TRINITY_DN12145_c0_g1:1193	si_a234	TRINITY_DN12145_c0_g1	1178	1202	1193	-31.30	-20.60	0.65814696485623	12.5	1-12,1202-1191;13-20,1186-1179	x-x,1190-1187[BULt];21-21,1178-1178[UP3]	.((((((((....((((((((((((&))))))))))))----)))))))).	UGGAUUGAAGUACUUGGUUGUGGAA&UUCUAUAAUCAA----UUCGAUCCC	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a234_TRINITY_DN12145_c0_g1_1193_TPlot.pdf
TRINITY_DN12145_c0_g1:1654	si_a552	TRINITY_DN12145_c0_g1	1639	1663	1654	-33.10	-21.78	0.658006042296073	10	3-13,1661-1651;15-20,1645-1640	1-2,1663-1662[UP5];14-14,1650-1646[AILt];21-21,1639-1639[UP3]	.((((((.....(((((((((((..&..)))))))))))----.)))))).	AGGGGAGUGUGUUAAAGAAAUGGGA&AUCUAUUUCUUUA----UCUCCCCG	2	0.994497155904433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN12145_c0_g1_1654_TPlot.pdf
TRINITY_DN12145_c0_g1:1655	si_a551	TRINITY_DN12145_c0_g1	1640	1664	1655	-31.60	-21.38	0.676582278481013	11	4-14,1661-1651;16-21,1645-1640	1-3,1664-1662[UP5];15-15,1650-1646[AILt]	((((((.....(((((((((((...&...)))))))))))----.))))))	GGGGAGUGUGUUAAAGAAAUGGGAG&AAUCUAUUUCUUUA----UCUCCCC	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN12145_c0_g1_1655_TPlot.pdf
TRINITY_DN12152_c0_g2:414	si_s896	TRINITY_DN12152_c0_g2	402	423	414	-31.60	-25.10	0.794303797468354	4	1-16,423-408;19-19,405-405;20-21,403-402	17-18,407-406[SIL];x-x,404-404[BULt]	((.(..((((((((((((((((&))))))))))))))))..)-))	UGCAUUUUGAAGAGGAAGCCUA&UAGGCUUUCUCUUCAAUUU-CA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN12152_c0_g2_414_TPlot.pdf
TRINITY_DN12152_c0_g2:415	si_s895	TRINITY_DN12152_c0_g2	404	424	415	-31.10	-26.40	0.84887459807074	5	1-17,424-408	18-21,407-404[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAUUUUGAAGAGGAAGCCUAU&AUAGGCUUUCUCUUCAAUUUC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN12152_c0_g2_415_TPlot.pdf
TRINITY_DN12152_c0_g2:420	si_s890	TRINITY_DN12152_c0_g2	409	429	420	-29.50	-25.60	0.867796610169492	9.5	6-21,424-409	1-5,429-425[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAAGAGGAAGCCUAUAUAAA&AAUAAAUAGGCUUUCUCUUCA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN12152_c0_g2_420_TPlot.pdf
TRINITY_DN12152_c0_g2:421	si_s889	TRINITY_DN12152_c0_g2	410	430	421	-28.80	-24.10	0.836805555555556	11.5	7-21,424-410	1-6,430-425[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGAGGAAGCCUAUAUAAAU&AAAUAAAUAGGCUUUCUCUUC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN12152_c0_g2_421_TPlot.pdf
TRINITY_DN12152_c0_g2:422	si_s888	TRINITY_DN12152_c0_g2	411	431	422	-26.80	-21.10	0.787313432835821	13.5	8-21,424-411	1-7,431-425[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAGGAAGCCUAUAUAAAUG&AAAAUAAAUAGGCUUUCUCUU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN12152_c0_g2_422_TPlot.pdf
TRINITY_DN12152_c0_g2:423	si_s887	TRINITY_DN12152_c0_g2	412	432	423	-26.80	-20.20	0.753731343283582	15.5	9-21,424-412	1-8,432-425[UP5]	(((((((((((((........&........)))))))))))))	AGAGGAAGCCUAUAUAAAUGA&AAAAAUAAAUAGGCUUUCUCU	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN12152_c0_g2_423_TPlot.pdf
TRINITY_DN12152_c0_g2:424	si_s886	TRINITY_DN12152_c0_g2	413	433	424	-26.50	-18.90	0.713207547169811	17.5	10-21,424-413	1-9,433-425[UP5]	((((((((((((.........&.........))))))))))))	GAGGAAGCCUAUAUAAAUGAA&UAAAAAUAAAUAGGCUUUCUC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN12152_c0_g2_424_TPlot.pdf
TRINITY_DN12152_c0_g2:574	si_a285	TRINITY_DN12152_c0_g2	561	583	574	-28.30	-19.10	0.674911660777385	9	2-13,582-571;14-18,568-564	1-1,583-583[UP5];x-x,570-569[BULt];19-21,563-561[UP3]	...(((((..((((((((((((.&.))))))))))))--)))))...	UUAUUGAGACUCCAGGUGAUCUA&AAGAUCGCUUGGA--UUUAAAAA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN12152_c0_g2_574_TPlot.pdf
TRINITY_DN12152_c0_g2:575	si_a284	TRINITY_DN12152_c0_g2	562	584	575	-28.30	-19.10	0.674911660777385	10	3-14,582-571;15-19,568-564	1-2,584-583[UP5];x-x,570-569[BULt];20-21,563-562[UP3]	..(((((..((((((((((((..&..))))))))))))--)))))..	UAUUGAGACUCCAGGUGAUCUAC&AAAGAUCGCUUGGA--UUUAAAA	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN12152_c0_g2_575_TPlot.pdf
TRINITY_DN12152_c0_g2:806	si_s530	TRINITY_DN12152_c0_g2	795	815	806	-29.50	-19.30	0.654237288135593	5.5	3-14,813-802;16-21,800-795	1-2,815-814[UP5];15-15,801-801[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AUUGGAGCAAAGAUGAUUUAU&CGAAAUCAUUUUUGAUCCGAU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN12152_c0_g2_806_TPlot.pdf
TRINITY_DN12152_c0_g3:85	si_a764	TRINITY_DN12152_c0_g3	73	94	85	-28.90	-19.20	0.664359861591695	11	4-12,91-83;14-20,80-74	1-3,94-92[UP5];13-13,82-81[AILt];21-21,73-73[UP3]	.(((((((..(((((((((...&...)))))))))-.))))))).	GUGAAUCAUUUCGAGAACCGUU&UUGGGUUUUUGA-UUGAUUCAA	4	0.999999889524339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN12152_c0_g3_85_TPlot.pdf
TRINITY_DN12155_c1_g2:281	si_a415	TRINITY_DN12155_c1_g2	270	290	281	-18.10	-12.90	0.712707182320442	4.5	1-3,290-288;5-21,286-270	4-4,287-287[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	UUAUAUUUAUUUGAAUGGAAA&UUUAUAUUUAAAUAAAUAUAG	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN12155_c1_g2_281_TPlot.pdf
TRINITY_DN12155_c1_g2:282	si_a414	TRINITY_DN12155_c1_g2	271	291	282	-18.10	-12.40	0.685082872928177	5	2-4,290-288;6-21,286-271	1-1,291-291[UP5];5-5,287-287[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	UAUAUUUAUUUGAAUGGAAAG&GUUUAUAUUUAAAUAAAUAUA	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN12155_c1_g2_282_TPlot.pdf
TRINITY_DN12157_c0_g1:321	si_s508	TRINITY_DN12157_c0_g1	309	330	321	-22.80	-16.40	0.719298245614035	5.5	1-13,330-318;15-18,315-312	14-14,317-316[AILt];19-21,311-309[UP3]	...((((..(((((((((((((&)))))))))))))-.))))...	ACAGAGAUCUAUAGAAUUGUUU&AAACAAUUCUAUA-UUCUUAAU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN12157_c0_g1_321_TPlot.pdf
TRINITY_DN1215_c0_g1:1981	si_a420	TRINITY_DN1215_c0_g1	1970	1990	1981	-25.00	-16.60	0.664	6	1-10,1990-1981;12-20,1979-1971	11-11,1980-1980[SIL];21-21,1970-1970[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	UGAUUCUGUACUUGUUUGAAU&AUUUAAAUAAAUAUAGGAUCC	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN1215_c0_g1_1981_TPlot.pdf
TRINITY_DN12163_c0_g1:1204	si_a440	TRINITY_DN12163_c0_g1	1193	1212	1204	-30.80	-21.60	0.701298701298701	5.5	2-9,1211-1204;11-16,1203-1198;18-21,1196-1193	1-1,1212-1212[UP5];10-10,x-x[BULq];17-17,1197-1197[SIL]	((((.((((((-((((((((.&.)))))))).)))))).))))	GCGACUGUCUC-UAUCCAACU&CGUUGGAUAUGAGAUAAUUGU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN12163_c0_g1_1204_TPlot.pdf
TRINITY_DN12163_c0_g1:878	si_a766	TRINITY_DN12163_c0_g1	867	887	878	-30.50	-24.20	0.79344262295082	8	1-18,887-870	19-21,869-867[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUCUGAAUCAGUUGAAGGCCC&GGGUUUUUGAUUGAUUCAACU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN12163_c0_g1_878_TPlot.pdf
TRINITY_DN12163_c0_g2:2743	si_s79	TRINITY_DN12163_c0_g2	2731	2752	2743	-26.20	-17.10	0.652671755725191	13	7-11,2746-2742;12-21,2740-2731	1-6,2752-2747[UP5];x-x,2741-2741[BULt]	((((((((((.(((((......&......)))))-))))))))))	AAGAAGAAAGAGAAAGCUGUGG&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12163_c0_g2_2743_TPlot.pdf
TRINITY_DN12172_c0_g1:732	si_a20	TRINITY_DN12172_c0_g1	721	739	732	-26.70	-17.48	0.654681647940075	11.5	1-7,739-733;12-20,730-722	8-11,732-731[AILq];21-21,721-721[UP3]	.(((((((((..--(((((((&)))))))....))))))))).	CAGAGCUAGAUU--GAUAGGU&GCCUAUUUAUUUUUAGUUCUA	4	0.999999996409959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN12172_c0_g1_732_TPlot.pdf
TRINITY_DN12172_c0_g1:831	si_a233	TRINITY_DN12172_c0_g1	820	840	831	-28.90	-19.20	0.664359861591695	12	5-6,836-835;9-21,832-820	1-4,840-837[UP5];7-8,834-833[SIL]	(((((((((((((..((....&....))..)))))))))))))	GGAUCGAAUUGGUCUUAAUUA&UUUCUAUAAUCAAUUCGAUCC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN12172_c0_g1_831_TPlot.pdf
TRINITY_DN12179_c0_g1:763	si_a734	TRINITY_DN12179_c0_g1	750	772	763	-42.40	-28.10	0.662735849056604	7.5	1-8,772-765;10-13,763-760;14-15,758-757;16-21,755-750	9-9,764-764[SIL];x-x,759-759[BULt];x-x,756-756[BULt]	((((((.((.((((.((((((((&)))))))).))))-))-))))))	GUGGCUAAGAGGGUUGAGGUGCU&GGCAUCUUUACCC-CU-GGCCAU	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN12179_c0_g1_763_TPlot.pdf
TRINITY_DN12196_c0_g1:1215	si_s525	TRINITY_DN12196_c0_g1	1204	1224	1215	-24.00	-16.70	0.695833333333333	9.5	3-6,1222-1219;9-21,1216-1204	1-2,1224-1223[UP5];7-8,1218-1217[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	AUCGAAAAUGGUUGAGAGUAA&UAAUUCGAAAUCAUUUUUGAU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN12196_c0_g1_1215_TPlot.pdf
TRINITY_DN12196_c0_g1:1802	si_s84	TRINITY_DN12196_c0_g1	1791	1811	1802	-32.30	-21.20	0.656346749226006	6	3-6,1809-1806;8-20,1804-1792	1-2,1811-1810[UP5];7-7,1805-1805[SIL];21-21,1791-1791[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AGAAGAAGAAGAAAAGAAAAC&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN12196_c0_g1_1802_TPlot.pdf
TRINITY_DN12196_c0_g1:1803	si_s83	TRINITY_DN12196_c0_g1	1792	1812	1803	-30.90	-20.80	0.673139158576052	7	4-7,1809-1806;9-21,1804-1792	1-3,1812-1810[UP5];8-8,1805-1805[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAGAAGAAGAAAAGAAAACA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN12196_c0_g1_1803_TPlot.pdf
TRINITY_DN12196_c0_g1:181	si_a463	TRINITY_DN12196_c0_g1	170	190	181	-19.70	-14.00	0.710659898477157	6.5	2-17,189-174	1-1,190-190[UP5];18-21,173-170[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUCUUUAUAUAUUAUGUAUAU&UUAUAUAUAAUAUGUAAUUAU	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN12196_c0_g1_181_TPlot.pdf
TRINITY_DN12196_c0_g1:1962	si_s898	TRINITY_DN12196_c0_g1	1951	1972	1962	-30.70	-20.70	0.674267100977199	6	1-8,1972-1965;9-11,1963-1961;14-20,1958-1952	x-x,1964-1964[BULt];12-13,1960-1959[SIL];21-21,1951-1951[UP3]	.(((((((..(((.((((((((&))))))))-)))..))))))).	UUUGAAAUCAAAGAAGAAAGCC&GGCUUUCU-CUUCAAUUUCAAU	4	0.999999073922236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN12196_c0_g1_1962_TPlot.pdf
TRINITY_DN12196_c0_g1:1963	si_s897	TRINITY_DN12196_c0_g1	1952	1973	1963	-31.30	-20.70	0.661341853035144	5	2-9,1972-1965;10-12,1963-1961;15-21,1958-1952	1-1,1973-1973[UP5];x-x,1964-1964[BULt];13-14,1960-1959[SIL]	(((((((..(((.((((((((.&.))))))))-)))..)))))))	UUGAAAUCAAAGAAGAAAGCCA&AGGCUUUCU-CUUCAAUUUCAA	2	0.999852888465746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN12196_c0_g1_1963_TPlot.pdf
TRINITY_DN12196_c0_g1:2822	si_s68	TRINITY_DN12196_c0_g1	2811	2831	2822	-23.10	-17.10	0.74025974025974	6.5	1-15,2831-2817	16-21,2816-2811[UP3]	......(((((((((((((((&)))))))))))))))......	CGUCACGAAAAAUAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.999984480170049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12196_c0_g1_2822_TPlot.pdf
TRINITY_DN12197_c0_g3:141	si_a194	TRINITY_DN12197_c0_g3	130	150	141	-29.40	-24.80	0.843537414965986	7	1-15,150-136	16-21,135-130[UP3]	......(((((((((((((((&)))))))))))))))......	UGGCCGUAGUGAACAGGGAGA&UUUCCCUGUUCACUAAUAAAU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN12197_c0_g3_141_TPlot.pdf
TRINITY_DN12197_c3_g1:58	si_a195	TRINITY_DN12197_c3_g1	47	67	58	-31.40	-21.20	0.67515923566879	9	2-14,66-54	1-1,67-67[UP5];15-21,53-47[UP3]	.......(((((((((((((.&.))))))))))))).......	UUGACCGUAGUGAAUAGGGAG&UUCCCUGUUCACUAAUAAAUC	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a195_TRINITY_DN12197_c3_g1_58_TPlot.pdf
TRINITY_DN1219_c0_g1:1514	si_a828	TRINITY_DN1219_c0_g1	1503	1527	1514	-24.10	-16.20	0.672199170124481	11.5	2-7,1526-1521;8-19,1516-1505	1-1,1527-1527[UP5];x-x,1520-1517[BULt];20-21,1504-1503[UP3]	..((((((((((((....((((((.&.))))))----))))))))))))..	GACUGUUUUUUUUCCUCCUUUCCUA&AAGGAAA----GAAAAAAAAUAGAA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN1219_c0_g1_1514_TPlot.pdf
TRINITY_DN1219_c0_g1:1518	si_a824	TRINITY_DN1219_c0_g1	1507	1526	1518	-23.60	-16.00	0.677966101694915	7.5	3-9,1524-1518;12-21,1516-1507	1-2,1526-1525[UP5];10-11,1517-1517[AILq]	((((((((((.-(((((((..&..)))))))..))))))))))	GUUUUUUUUCC-UCCUUUCCU&AAGAAAGGAAAGAAAAAAAAU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN1219_c0_g1_1518_TPlot.pdf
TRINITY_DN1219_c0_g1:1768	si_a4	TRINITY_DN1219_c0_g1	1756	1778	1768	-31.60	-20.80	0.658227848101266	8	2-3,1777-1776;5-18,1773-1760;19-21,1758-1756	1-1,1778-1778[UP5];4-4,1775-1774[AILt];x-x,1759-1759[BULt]	(((.((((((((((((((..((.&.))-.))))))))))))))-)))	UAGAGCUUUCUUUUCGAUGAUCU&UGA-AAUUGAAGAGAAAGC-CUA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN1219_c0_g1_1768_TPlot.pdf
TRINITY_DN12200_c0_g2:1027	si_a479	TRINITY_DN12200_c0_g2	1016	1036	1027	-23.00	-16.30	0.708695652173913	6.5	1-10,1036-1027;12-19,1025-1018	11-11,1026-1026[SIL];20-21,1017-1016[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GUUGUUCUAUUUAACAAUGGU&AUUAUUGUUAUAUAGAAUAUG	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN12200_c0_g2_1027_TPlot.pdf
TRINITY_DN1220_c0_g1:956	si_a465	TRINITY_DN1220_c0_g1	945	965	956	-20.90	-14.40	0.688995215311005	5	2-12,964-954;14-20,952-946	1-1,965-965[UP5];13-13,953-953[SIL];21-21,945-945[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	AAAUAAUUUCAUGUUGUAUAG&AUAUAUAAUAUGUAAUUAUUG	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN1220_c0_g1_956_TPlot.pdf
TRINITY_DN1220_c0_g1:957	si_a464	TRINITY_DN1220_c0_g1	946	966	957	-19.60	-14.00	0.714285714285714	6	3-13,964-954;15-21,952-946	1-2,966-965[UP5];14-14,953-953[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAUAAUUUCAUGUUGUAUAGC&UAUAUAUAAUAUGUAAUUAUU	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN1220_c0_g1_957_TPlot.pdf
TRINITY_DN1220_c0_g3:1564	si_s75	TRINITY_DN1220_c0_g3	1553	1578	1564	-24.00	-16.90	0.704166666666667	14	2-8,1577-1571;9-20,1565-1554	1-1,1578-1578[UP5];x-x,1570-1566[BULt];21-21,1553-1553[UP3]	.((((((((((((.....(((((((.&.)))))))-----)))))))))))).	CGAAAGGAAAGAGUUUUCAAGAAAUU&UAUUUUUU-----UUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1220_c0_g3_1564_TPlot.pdf
TRINITY_DN12224_c0_g1:181	si_a363	TRINITY_DN12224_c0_g1	170	190	181	-26.40	-17.30	0.65530303030303	13.5	7-21,184-170	1-6,190-185[UP5]	(((((((((((((((......&......)))))))))))))))	GUUUUUGAUCUGAUUUUUUUU&UAUUUUGAUCGGAUCAAAAAU	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN12224_c0_g1_181_TPlot.pdf
TRINITY_DN12228_c0_g1:162	si_s45	TRINITY_DN12228_c0_g1	143	171	162	-24.70	-16.10	0.651821862348178	20	1-11,171-161;12-21,152-143	x-x,160-153[BULt]	((((((((((........(((((((((((&)))))))))))--------))))))))))	GACUUGAGAUAUUAACCCUCAAUUGUUGA&UUAAUAAUUGG--------AUUUCAAGUU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN12228_c0_g1_162_TPlot.pdf
TRINITY_DN12231_c0_g1:1763	si_s92	TRINITY_DN12231_c0_g1	1750	1772	1763	-34.90	-23.70	0.679083094555874	6	2-13,1771-1760;14-15,1758-1757;17-18,1755-1754;19-21,1752-1750	1-1,1772-1772[UP5];x-x,1759-1759[BULt];16-16,1756-1756[SIL];x-x,1753-1753[BULt]	(((.((.((.((((((((((((.&.))))))))))))-)).))-)))	GUCUCGUGGACGAAGAAGAGGAC&UUCUUCUUCUUCG-CUUCG-GAU	4	0.999999998639336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN12231_c0_g1_1763_TPlot.pdf
TRINITY_DN12231_c0_g1:2043	si_a367	TRINITY_DN12231_c0_g1	2032	2052	2043	-28.80	-19.10	0.663194444444445	9	1-12,2052-2041	13-21,2040-2032[UP3]	.........((((((((((((&)))))))))))).........	AACUCUUCAUGAUCCGAUCAA&UUGAUCGGAUCAAAAAUGAUU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a367_TRINITY_DN12231_c0_g1_2043_TPlot.pdf
TRINITY_DN12231_c0_g1:2048	si_a362	TRINITY_DN12231_c0_g1	2037	2057	2048	-28.00	-23.00	0.821428571428571	6	2-17,2056-2041	1-1,2057-2057[UP5];18-21,2040-2037[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUCAUGAUCCGAUCAAAAUGU&CUAUUUUGAUCGGAUCAAAAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN12231_c0_g1_2048_TPlot.pdf
TRINITY_DN12231_c0_g1:775	si_a303	TRINITY_DN12231_c0_g1	764	784	775	-28.40	-18.70	0.658450704225352	13	6-19,779-766	1-5,784-780[UP5];20-21,765-764[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAAAGUCCGAGUGAAUACACG&AAAAGAUUCGCUUGGAUUUAU	3	0.99999698871827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN12231_c0_g1_775_TPlot.pdf
TRINITY_DN12231_c0_g1:776	si_a302	TRINITY_DN12231_c0_g1	765	785	776	-28.20	-18.70	0.663120567375887	14	7-20,779-766	1-6,785-780[UP5];21-21,765-765[UP3]	.((((((((((((((......&......)))))))))))))).	AAAGUCCGAGUGAAUACACGG&AAAAAGAUUCGCUUGGAUUUA	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN12231_c0_g1_776_TPlot.pdf
TRINITY_DN12232_c0_g2:1683	si_a66	TRINITY_DN12232_c0_g2	1672	1691	1683	-26.70	-17.50	0.655430711610487	8	1-6,1691-1686;9-10,1684-1683;12-20,1681-1673	7-8,1685-1685[AILq];11-11,1682-1682[SIL];21-21,1672-1672[UP3]	.(((((((((.((.-((((((&))))))..)).))))))))).	UGAAGCAAUUAGAU-GAAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN12232_c0_g2_1683_TPlot.pdf
TRINITY_DN12232_c0_g2:1684	si_a65	TRINITY_DN12232_c0_g2	1673	1692	1684	-27.70	-18.90	0.682310469314079	7	1-7,1692-1686;10-11,1684-1683;13-21,1681-1673	8-9,1685-1685[AILq];12-12,1682-1682[SIL]	(((((((((.((.-(((((((&)))))))..)).)))))))))	GAAGCAAUUAGAU-GAAGCGA&UCGCUUCUUUCAAAUUGUUUU	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN12232_c0_g2_1684_TPlot.pdf
TRINITY_DN12234_c0_g1:139	si_a633	TRINITY_DN12234_c0_g1	128	148	139	-26.40	-17.90	0.678030303030303	7.5	1-4,148-145;6-18,143-131	5-5,144-144[SIL];19-21,130-128[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UCAUCAAAAGAAUCGAGAUGG&UUAUGUCGAUUUUUUUGAGUA	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN12234_c0_g1_139_TPlot.pdf
TRINITY_DN12234_c0_g1:140	si_a632	TRINITY_DN12234_c0_g1	129	149	140	-26.10	-17.90	0.685823754789272	7.5	2-5,148-145;7-19,143-131	1-1,149-149[UP5];6-6,144-144[SIL];20-21,130-129[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	CAUCAAAAGAAUCGAGAUGGC&AUUAUGUCGAUUUUUUUGAGU	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN12234_c0_g1_140_TPlot.pdf
TRINITY_DN12234_c0_g1:141	si_a631	TRINITY_DN12234_c0_g1	130	150	141	-25.70	-17.90	0.696498054474708	8.5	3-6,148-145;8-20,143-131	1-2,150-149[UP5];7-7,144-144[SIL];21-21,130-130[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AUCAAAAGAAUCGAGAUGGCC&UAUUAUGUCGAUUUUUUUGAG	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN12234_c0_g1_141_TPlot.pdf
TRINITY_DN12239_c0_g1:1327	si_a329	TRINITY_DN12239_c0_g1	1314	1336	1327	-29.60	-19.70	0.66554054054054	13	4-11,1333-1326;12-20,1323-1315	1-3,1336-1334[UP5];x-x,1325-1324[BULt];21-21,1314-1314[UP3]	.(((((((((..((((((((...&...))))))))--))))))))).	GGGGGCGAGGCUAAUAAGGACAC&AUUUUUUUAUU--CCUUGUCCCG	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN12239_c0_g1_1327_TPlot.pdf
TRINITY_DN12242_c0_g1:18	si_a690	TRINITY_DN12242_c0_g1	7	27	18	-35.90	-23.60	0.657381615598886	8.5	1-9,27-19;11-11,17-17;13-20,15-8	10-10,18-18[SIL];12-12,16-16[SIL];21-21,7-7[UP3]	.((((((((.(.(((((((((&))))))))).).)))))))).	GAUCAGUUGCGCUCGGAGCUG&CGGUUUCGAACACAACUGGUA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a690_TRINITY_DN12242_c0_g1_18_TPlot.pdf
TRINITY_DN12242_c0_g1:1958	si_s79	TRINITY_DN12242_c0_g1	1947	1967	1958	-26.20	-18.50	0.706106870229008	12	6-9,1962-1959;11-21,1957-1947	1-5,1967-1963[UP5];10-10,1958-1958[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	GAGAAGAAGGGCAAGACCGCC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12242_c0_g1_1958_TPlot.pdf
TRINITY_DN12242_c0_g1:2052	si_a372	TRINITY_DN12242_c0_g1	2041	2063	2052	-29.40	-19.46	0.661904761904762	12.5	1-9,2063-2055;13-19,2049-2043	10-12,2054-2050[AILt];20-21,2042-2041[UP3]	..(((((((.....(((((((((&)))))))))--...)))))))..	GCCGGAAUCUCUUCUUUGAUCCG&CGGAUCAAA--AAUGAUUUCGAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN12242_c0_g1_2052_TPlot.pdf
TRINITY_DN12246_c0_g1:1023	si_a405	TRINITY_DN12246_c0_g1	1012	1032	1023	-19.80	-13.90	0.702020202020202	9	3-18,1030-1015	1-2,1032-1031[UP5];19-21,1014-1012[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGCAAUAUAGACGAAAUAAAU&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999999806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN12246_c0_g1_1023_TPlot.pdf
TRINITY_DN12248_c0_g2:5510	si_s82	TRINITY_DN12248_c0_g2	5497	5519	5510	-28.90	-21.70	0.750865051903114	6.5	1-10,5519-5510;11-17,5508-5502;18-21,5500-5497	x-x,5509-5509[BULt];x-x,5501-5501[BULt]	((((.(((((((.((((((((((&))))))))))-)))))))-))))	GAGACAGAGGAACAGGAGAGGAG&UUUCUUUCCU-UUCUUCU-UCUU	3	0.99999999216637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN12248_c0_g2_5510_TPlot.pdf
TRINITY_DN12248_c0_g2:5511	si_s81	TRINITY_DN12248_c0_g2	5498	5520	5511	-28.90	-21.10	0.730103806228374	7	1-11,5520-5510;12-18,5508-5502;19-21,5500-5498	x-x,5509-5509[BULt];x-x,5501-5501[BULt]	(((.(((((((.(((((((((((&)))))))))))-)))))))-)))	AGACAGAGGAACAGGAGAGGAGG&UUUUCUUUCCU-UUCUUCU-UCU	2	0.999999957618208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN12248_c0_g2_5511_TPlot.pdf
TRINITY_DN12248_c0_g2:5514	si_s78	TRINITY_DN12248_c0_g2	5502	5523	5514	-26.20	-19.40	0.740458015267176	10.5	4-14,5520-5510;15-21,5508-5502	1-3,5523-5521[UP5];x-x,5509-5509[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AGAGGAACAGGAGAGGAGGUGG&UUUUUUUCUUUCCU-UUCUUCU	3	0.999999999999835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12248_c0_g2_5514_TPlot.pdf
TRINITY_DN12248_c0_g2:5515	si_s814	TRINITY_DN12248_c0_g2	5504	5524	5515	-26.60	-17.70	0.665413533834586	12.5	1-13,5524-5512	14-21,5511-5504[UP3]	........(((((((((((((&)))))))))))))........	AGGAACAGGAGAGGAGGUGGC&GUUACCUUUUCUUAAUAAUGA	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN12248_c0_g2_5515_TPlot.pdf
TRINITY_DN12248_c0_g2:5518	si_s811	TRINITY_DN12248_c0_g2	5507	5527	5518	-26.40	-17.80	0.674242424242424	14.5	4-16,5524-5512	1-3,5527-5525[UP5];17-21,5511-5507[UP3]	.....(((((((((((((...&...))))))))))))).....	AACAGGAGAGGAGGUGGCACU&UUCGUUACCUUUUCUUAAUAA	3	0.999989219606595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN12248_c0_g2_5518_TPlot.pdf
TRINITY_DN12248_c0_g2:5649	si_s181	TRINITY_DN12248_c0_g2	5634	5657	5649	-34.60	-25.50	0.736994219653179	6.5	1-8,5657-5650;10-15,5649-5644;16-21,5639-5634	9-9,x-x[BULq];x-x,5643-5640[BULt]	((((((....((((((-((((((((&)))))))).))))))----))))))	GAUAAUGCUCCGUUAC-CGGGCAUC&GAUGCCCGAGUAACG----AUUAUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN12248_c0_g2_5649_TPlot.pdf
TRINITY_DN12248_c0_g2:5654	si_s175	TRINITY_DN12248_c0_g2	5644	5663	5654	-38.10	-30.30	0.795275590551181	5	1-4,5663-5660;7-14,5657-5650;16-21,5649-5644	5-6,5659-5658[SIL];15-15,x-x[BULq]	((((((-((((((((..((((&))))..)))))))).))))))	CGUUAC-CGGGCAUCGAUACC&GGUAAAGAUGCCCGAGUAACG	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s175_TRINITY_DN12248_c0_g2_5654_TPlot.pdf
TRINITY_DN12248_c0_g2:5655	si_s174	TRINITY_DN12248_c0_g2	5645	5664	5655	-39.00	-28.30	0.725641025641026	6	2-5,5663-5660;8-15,5657-5650;17-21,5649-5645	1-1,5664-5664[UP5];6-7,5659-5658[SIL];16-16,x-x[BULq]	(((((-((((((((..((((.&.))))..)))))))).)))))	GUUAC-CGGGCAUCGAUACCA&GGGUAAAGAUGCCCGAGUAAC	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN12248_c0_g2_5655_TPlot.pdf
TRINITY_DN1224_c0_g1:1388	si_s812	TRINITY_DN1224_c0_g1	1377	1397	1388	-26.40	-17.80	0.674242424242424	6.5	1-6,1397-1392;8-18,1390-1380	7-7,1391-1391[SIL];19-21,1379-1377[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	AAAAUUGAGAAAGGUUAACGA&UCGUUACCUUUUCUUAAUAAU	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN1224_c0_g1_1388_TPlot.pdf
TRINITY_DN1224_c0_g1:1389	si_s811	TRINITY_DN1224_c0_g1	1378	1398	1389	-26.40	-17.90	0.678030303030303	6.5	2-7,1397-1392;9-19,1390-1380	1-1,1398-1398[UP5];8-8,1391-1391[SIL];20-21,1379-1378[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AAAUUGAGAAAGGUUAACGAC&UUCGUUACCUUUUCUUAAUAA	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN1224_c0_g1_1389_TPlot.pdf
TRINITY_DN1224_c0_g1:1805	si_a358	TRINITY_DN1224_c0_g1	1792	1814	1805	-29.10	-19.40	0.666666666666667	8	2-12,1813-1803;14-15,1800-1799;16-20,1797-1793	1-1,1814-1814[UP5];13-13,1802-1801[AILt];x-x,1798-1798[BULt];21-21,1792-1792[UP3]	.(((((.((..(((((((((((.&.)))))))))))-.))-))))).	AGAUCCUGAGCCAAGAUGGAAUC&AAUUCUAUUUUG-AUC-GGAUCA	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN1224_c0_g1_1805_TPlot.pdf
TRINITY_DN12250_c0_g1:1467	si_s458	TRINITY_DN12250_c0_g1	1456	1477	1467	-29.30	-19.90	0.679180887372014	8	1-1,1477-1477;3-9,1475-1469;11-20,1466-1457	2-2,1476-1476[SIL];10-10,1468-1467[AILt];21-21,1456-1456[UP3]	.((((((((((..(((((((.(&).)))))))-.)))))))))).	CUGGAUAUGGGCUUAAUUGUCG&CAACAAUUA-UCUCAUAUCCAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN12250_c0_g1_1467_TPlot.pdf
TRINITY_DN12251_c0_g1:366	si_s436	TRINITY_DN12251_c0_g1	355	378	366	-19.60	-12.80	0.653061224489796	10.5	1-5,378-374;6-19,370-357	x-x,373-371[BULt];20-21,356-355[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	CUUGUAUGGUAUGUAGACUUUAUU&AAUAA---UUACAUAUUAUAUAUA	2	0.99984729171278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN12251_c0_g1_366_TPlot.pdf
TRINITY_DN12251_c1_g1:1185	si_a142	TRINITY_DN12251_c1_g1	1174	1194	1185	-23.50	-15.30	0.651063829787234	8	1-16,1194-1179	17-21,1178-1174[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACAACAUAGCAAUGGUUAAUU&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999997808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN12251_c1_g1_1185_TPlot.pdf
TRINITY_DN12255_c0_g1:1104	si_s93	TRINITY_DN12255_c0_g1	1089	1113	1104	-34.80	-24.30	0.698275862068966	12	1-10,1113-1104;11-13,1100-1098;14-19,1096-1091	x-x,1103-1101[BULt];x-x,1097-1097[BULt];20-21,1090-1089[UP3]	..((((((.(((...((((((((((&))))))))))---)))-))))))..	AUUCCGAAGGCGGAUGAGAGGAGGA&UCUUCUUCUU---CGC-UUCGGAUU	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN12255_c0_g1_1104_TPlot.pdf
TRINITY_DN12255_c0_g1:1352	si_s605	TRINITY_DN12255_c0_g1	1340	1362	1352	-27.50	-17.90	0.650909090909091	5	2-5,1361-1358;6-13,1356-1349;15-19,1347-1343;20-21,1341-1340	1-1,1362-1362[UP5];x-x,1357-1357[BULt];14-14,1348-1348[SIL];x-x,1342-1342[BULt]	((.(((((.((((((((.((((.&.))))-)))))))).)))))-))	GGAAUUUAUAAAAGAUUACGCUG&AAGCG-AAUCUUUUUUAAAU-CC	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN12255_c0_g1_1352_TPlot.pdf
TRINITY_DN12255_c0_g1:1416	si_a403	TRINITY_DN12255_c0_g1	1405	1425	1416	-22.00	-14.80	0.672727272727273	9	2-14,1424-1412	1-1,1425-1425[UP5];15-21,1411-1405[UP3]	.......(((((((((((((.&.))))))))))))).......	ACGCUUUGGCAAAACAAUUCA&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999991163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN12255_c0_g1_1416_TPlot.pdf
TRINITY_DN12255_c0_g1:1418	si_a401	TRINITY_DN12255_c0_g1	1407	1427	1418	-22.60	-14.80	0.654867256637168	11	4-16,1424-1412	1-3,1427-1425[UP5];17-21,1411-1407[UP3]	.....(((((((((((((...&...))))))))))))).....	GCUUUGGCAAAACAAUUCACU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN12255_c0_g1_1418_TPlot.pdf
TRINITY_DN12255_c0_g1:1493	si_a301	TRINITY_DN12255_c0_g1	1479	1502	1493	-27.80	-19.20	0.690647482014388	16	7-14,1496-1489;15-21,1485-1479	1-6,1502-1497[UP5];x-x,1488-1486[BULt]	(((((((...((((((((......&......))))))))---)))))))	GAGUCCAAAAAGCGAGUCAGAGAA&AAAAAAGAUUCGCU---UGGAUUU	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN12255_c0_g1_1493_TPlot.pdf
TRINITY_DN12255_c0_g1:1504	si_s87	TRINITY_DN12255_c0_g1	1488	1517	1504	-32.90	-22.60	0.68693009118541	14	1-6,1517-1512;7-15,1507-1499;16-21,1493-1488	x-x,1511-1508[BULt];x-x,1498-1494[BULt]	((((((.....(((((((((....((((((&))))))----)))))))))-----))))))	AAGCGAGUCAGAGAAGAGGAUACUAAGGAA&UUCCUU----UCUUCUUCU-----UCGCUU	2	0.999999998065065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN12255_c0_g1_1504_TPlot.pdf
TRINITY_DN12255_c0_g1:1505	si_s86	TRINITY_DN12255_c0_g1	1489	1518	1505	-32.90	-21.90	0.665653495440729	15	2-7,1517-1512;8-16,1507-1499;17-21,1493-1489	1-1,1518-1518[UP5];x-x,1511-1508[BULt];x-x,1498-1494[BULt]	(((((.....(((((((((....((((((.&.))))))----)))))))))-----)))))	AGCGAGUCAGAGAAGAGGAUACUAAGGAAG&UUUCCUU----UCUUCUUCU-----UCGCU	2	0.99999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN12255_c0_g1_1505_TPlot.pdf
TRINITY_DN12255_c0_g1:1519	si_a501	TRINITY_DN12255_c0_g1	1508	1531	1519	-33.50	-22.50	0.671641791044776	10.5	2-8,1530-1524;9-19,1520-1510	1-1,1531-1531[UP5];x-x,1523-1521[BULt];20-21,1509-1508[UP3]	..(((((((((((...(((((((.&.)))))))---)))))))))))..	UACUAAGGAAGACAAAGAAAAGCC&CGUUUUUC---GUCUUCCUUGGAA	2	0.999992852398334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN12255_c0_g1_1519_TPlot.pdf
TRINITY_DN12255_c0_g1:1520	si_a500	TRINITY_DN12255_c0_g1	1509	1532	1520	-34.40	-22.50	0.654069767441861	11.5	3-9,1530-1524;10-20,1520-1510	1-2,1532-1531[UP5];x-x,1523-1521[BULt];21-21,1509-1509[UP3]	.(((((((((((...(((((((..&..)))))))---))))))))))).	ACUAAGGAAGACAAAGAAAAGCCA&UCGUUUUUC---GUCUUCCUUGGA	2	0.999999700904118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN12255_c0_g1_1520_TPlot.pdf
TRINITY_DN12255_c0_g1:614	si_s3	TRINITY_DN12255_c0_g1	603	622	614	-21.20	-14.70	0.693396226415094	6	1-9,622-614;11-21,613-603	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	AGUGAUAAUGA-UGGUAUAAG&UUUAUAUUACUUAUUAUUACU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN12255_c0_g1_614_TPlot.pdf
TRINITY_DN1225_c0_g1:3604	si_a472	TRINITY_DN1225_c0_g1	3593	3612	3604	-21.50	-15.00	0.697674418604651	9	2-7,3611-3606;9-20,3605-3594	1-1,3612-3612[UP5];8-8,x-x[BULq];21-21,3593-3593[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AAUAUGGCAGUAG-UGCAUGA&AUAUGUAAUUAUUGUUAUAUA	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1225_c0_g1_3604_TPlot.pdf
TRINITY_DN1225_c0_g1:4253	si_a278	TRINITY_DN1225_c0_g1	4242	4262	4253	-34.20	-23.00	0.672514619883041	5.5	1-3,4262-4260;5-15,4258-4248;17-21,4246-4242	4-4,4259-4259[SIL];16-16,4247-4247[SIL]	(((((.(((((((((((.(((&))).))))))))))).)))))	AUCCGUGCGGUCUUUUUAUAG&CUACGAAAAGAUCGCUUGGAU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a278_TRINITY_DN1225_c0_g1_4253_TPlot.pdf
TRINITY_DN12263_c0_g1:684	si_s452	TRINITY_DN12263_c0_g1	672	693	684	-25.50	-17.30	0.67843137254902	9	4-14,690-680;15-20,678-673	1-3,693-691[UP5];x-x,679-679[BULt];21-21,672-672[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	CUGGGAUAAGUUGUUGUUGGAA&AUAUAACAACAAUU-AUCUCAU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s452_TRINITY_DN12263_c0_g1_684_TPlot.pdf
TRINITY_DN12265_c0_g1:119	si_s8	TRINITY_DN12265_c0_g1	108	128	119	-21.30	-15.80	0.741784037558685	8	1-15,128-114	16-21,113-108[UP3]	......(((((((((((((((&)))))))))))))))......	UAAGUUGUAGUAAUGAGUAAU&AUUACUUAUUAUUACUAUAUU	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN12265_c0_g1_119_TPlot.pdf
TRINITY_DN12267_c0_g1:1610	si_s80	TRINITY_DN12267_c0_g1	1598	1620	1610	-28.20	-19.70	0.698581560283688	8	3-7,1618-1614;8-14,1612-1606;15-21,1604-1598	1-2,1620-1619[UP5];x-x,1613-1613[BULt];x-x,1605-1605[BULt]	(((((((.(((((((.(((((..&..)))))-)))))))-)))))))	GAAGAGGAAGAGGAACAGGAACC&UUUUUCU-UUCCUUU-CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN12267_c0_g1_1610_TPlot.pdf
TRINITY_DN12268_c0_g1:128	si_a410	TRINITY_DN12268_c0_g1	117	137	128	-17.80	-13.30	0.747191011235955	9	1-15,137-123	16-21,122-117[UP3]	......(((((((((((((((&)))))))))))))))......	GAAGGGUAAAUGUAAGCAGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN12268_c0_g1_128_TPlot.pdf
TRINITY_DN12268_c0_g1:129	si_a409	TRINITY_DN12268_c0_g1	118	138	129	-19.50	-13.30	0.682051282051282	9	2-16,137-123	1-1,138-138[UP5];17-21,122-118[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAGGGUAAAUGUAAGCAGAAG&GUUUUGUUUAUAUUUAAAUAA	3	0.999999996514291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN12268_c0_g1_129_TPlot.pdf
TRINITY_DN12268_c0_g1:164	si_a196	TRINITY_DN12268_c0_g1	153	176	164	-32.80	-22.20	0.676829268292683	9	1-8,176-169;9-15,165-159;17-20,157-154	x-x,168-166[BULt];16-16,158-158[SIL];21-21,153-153[UP3]	.((((.(((((((...((((((((&))))))))---))))))).)))).	AGAUUAAUUAGUGUUAAGCAGGGA&UCCCUGUU---CACUAAUAAAUCG	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a196_TRINITY_DN12268_c0_g1_164_TPlot.pdf
TRINITY_DN12268_c0_g1:165	si_a195	TRINITY_DN12268_c0_g1	154	177	165	-31.40	-22.00	0.700636942675159	9	2-9,176-169;10-16,165-159;18-21,157-154	1-1,177-177[UP5];x-x,168-166[BULt];17-17,158-158[SIL]	((((.(((((((...((((((((.&.))))))))---))))))).))))	GAUUAAUUAGUGUUAAGCAGGGAU&UUCCCUGUU---CACUAAUAAAUC	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a195_TRINITY_DN12268_c0_g1_165_TPlot.pdf
TRINITY_DN12268_c0_g1:170	si_a193	TRINITY_DN12268_c0_g1	156	179	170	-30.90	-20.70	0.669902912621359	12	1-2,179-178;4-11,176-169;12-18,165-159	3-3,177-177[SIL];x-x,168-166[BULt];19-21,158-156[UP3]	...(((((((...((((((((.((&)).))))))))---)))))))...	UUAAUUAGUGUUAAGCAGGGAUAG&CUUUCCCUGUU---CACUAAUAAA	2	0.975189943484374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN12268_c0_g1_170_TPlot.pdf
TRINITY_DN12268_c0_g1:172	si_a191	TRINITY_DN12268_c0_g1	158	182	172	-32.00	-21.20	0.6625	9	2-5,181-178;6-13,176-169;14-20,165-159	1-1,182-182[UP5];x-x,177-177[BULt];x-x,168-166[BULt];21-21,158-158[UP3]	.(((((((...((((((((.((((.&.))))-))))))))---))))))).	AAUUAGUGUUAAGCAGGGAUAGGAA&AUCUU-UCCCUGUU---CACUAAUA	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN12268_c0_g1_172_TPlot.pdf
TRINITY_DN12268_c0_g1:32	si_a835	TRINITY_DN12268_c0_g1	22	42	32	-26.00	-17.20	0.661538461538462	4	1-4,42-39;5-14,37-28;16-21,27-22	x-x,38-38[BULt];15-15,x-x[BULq]	((((((-((((((((((.((((&))))-)))))))))).))))))	UAGCAA-UUCUGUUUUUAUUUC&GAAA-AAAAAUAGAAGUUGCUA	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN12268_c0_g1_32_TPlot.pdf
TRINITY_DN1226_c0_g1:4201	si_a467	TRINITY_DN1226_c0_g1	4189	4210	4201	-21.10	-13.92	0.659715639810426	6.5	1-13,4210-4198;17-21,4193-4189	14-16,4197-4194[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	AGCAACAUUUUACGUAUUGUAU&AUAUAAUAUGUAA-UUAUUGUU	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN1226_c0_g1_4201_TPlot.pdf
TRINITY_DN1226_c0_g1:4202	si_a466	TRINITY_DN1226_c0_g1	4190	4211	4202	-21.50	-14.12	0.656744186046512	7	1-14,4211-4198;18-21,4193-4190	15-17,4197-4194[AILt]	((((....((((((((((((((&))))))))))))))-...))))	GCAACAUUUUACGUAUUGUAUG&UAUAUAAUAUGUAA-UUAUUGU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN1226_c0_g1_4202_TPlot.pdf
TRINITY_DN12270_c1_g1:123	si_a462	TRINITY_DN12270_c1_g1	111	132	123	-21.20	-14.00	0.660377358490566	5.5	1-12,132-121;13-18,119-114	x-x,120-120[BULt];19-21,113-111[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	CCUUUAUAUAAUUAUAUAUAAC&GUUAUAUAUAAU-AUGUAAUUA	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN12270_c1_g1_123_TPlot.pdf
TRINITY_DN12270_c1_g1:125	si_a460	TRINITY_DN12270_c1_g1	113	134	125	-21.60	-14.20	0.657407407407407	5.5	3-14,132-121;15-20,119-114	1-2,134-133[UP5];x-x,120-120[BULt];21-21,113-113[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	UUUAUAUAAUUAUAUAUAACUA&UUGUUAUAUAUAAU-AUGUAAU	3	0.999958989673994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN12270_c1_g1_125_TPlot.pdf
TRINITY_DN12270_c1_g1:891	si_s849	TRINITY_DN12270_c1_g1	880	904	891	-41.10	-28.26	0.687591240875912	14.5	1-6,904-899;9-20,892-881	7-8,898-893[AILt];21-21,880-880[UP3]	.((((((((((((......((((((&))))))----..)))))))))))).	UUCUGGGAGUCGAAGCAGGUGCUUC&GAAGCG----AGUCGACUCCUAGAC	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s849_TRINITY_DN12270_c1_g1_891_TPlot.pdf
TRINITY_DN12270_c1_g1:892	si_s848	TRINITY_DN12270_c1_g1	881	905	892	-40.00	-29.66	0.7415	13.5	1-7,905-899;10-21,892-881	8-9,898-893[AILt]	((((((((((((......(((((((&)))))))----..))))))))))))	UCUGGGAGUCGAAGCAGGUGCUUCU&AGAAGCG----AGUCGACUCCUAGA	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s848_TRINITY_DN12270_c1_g1_892_TPlot.pdf
TRINITY_DN12270_c1_g1:893	si_s847	TRINITY_DN12270_c1_g1	882	906	893	-39.00	-27.86	0.714358974358974	14.5	2-8,905-899;11-21,892-882	1-1,906-906[UP5];9-10,898-893[AILt]	(((((((((((......(((((((.&.)))))))----..)))))))))))	CUGGGAGUCGAAGCAGGUGCUUCUG&AAGAAGCG----AGUCGACUCCUAG	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s847_TRINITY_DN12270_c1_g1_893_TPlot.pdf
TRINITY_DN12270_c1_g1:894	si_s846	TRINITY_DN12270_c1_g1	883	907	894	-37.30	-25.46	0.682573726541555	16.5	3-9,905-899;12-21,892-883	1-2,907-906[UP5];10-11,898-893[AILt]	((((((((((......(((((((..&..)))))))----..))))))))))	UGGGAGUCGAAGCAGGUGCUUCUGC&AAAGAAGCG----AGUCGACUCCUA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN12270_c1_g1_894_TPlot.pdf
TRINITY_DN12272_c0_g1:3842	si_s397	TRINITY_DN12272_c0_g1	3832	3851	3842	-32.10	-23.30	0.725856697819315	4	1-12,3851-3840;15-19,3838-3834	13-14,3839-3839[AILq];20-21,3833-3832[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	GCUUUCGA-UUCCUUGGAAUG&CAUUCCAAGGAAGACGAAAAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN12272_c0_g1_3842_TPlot.pdf
TRINITY_DN12272_c0_g1:3843	si_s396	TRINITY_DN12272_c0_g1	3833	3852	3843	-32.90	-24.80	0.753799392097265	3	1-13,3852-3840;16-20,3838-3834	14-15,3839-3839[AILq];21-21,3833-3833[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	CUUUCGA-UUCCUUGGAAUGU&ACAUUCCAAGGAAGACGAAAA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN12272_c0_g1_3843_TPlot.pdf
TRINITY_DN12273_c0_g5:2244	si_a221	TRINITY_DN12273_c0_g5	2233	2253	2244	-25.20	-16.40	0.650793650793651	14.5	8-21,2246-2233	1-7,2253-2247[UP5]	((((((((((((((.......&.......))))))))))))))	UUGUAGAAACAUGGAUUGUGU&AUUAAACUCAUGUUUCUAUAA	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN12273_c0_g5_2244_TPlot.pdf
TRINITY_DN12273_c0_g6:1380	si_a454	TRINITY_DN12273_c0_g6	1369	1389	1380	-21.30	-14.80	0.694835680751174	10.5	3-17,1387-1373	1-2,1389-1388[UP5];18-21,1372-1369[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUUGAUGUAUAAUAGCAGUGA&UAAUUGUUGUUAUAUAUAAUA	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN12273_c0_g6_1380_TPlot.pdf
TRINITY_DN12276_c0_g1:25	si_s579	TRINITY_DN12276_c0_g1	14	34	25	-26.70	-17.42	0.652434456928839	14.5	1-6,34-29;13-20,22-15	7-12,28-23[SIL];21-21,14-14[UP3]	.((((((((......((((((&))))))......)))))))).	GAUCCAUGGAUCAAGUGUUCC&GGAAUAAAAAAAUCAUGGAUA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN12276_c0_g1_25_TPlot.pdf
TRINITY_DN12279_c0_g1:2834	si_a652	TRINITY_DN12279_c0_g1	2823	2847	2834	-31.90	-21.00	0.658307210031348	15	3-9,2845-2839;10-19,2834-2825	1-2,2847-2846[UP5];x-x,2838-2835[BULt];20-21,2824-2823[UP3]	..((((((((((....(((((((..&..)))))))----))))))))))..	UUGGCAUUUCCUCUCGGAUAUGUCU&UAAUAUAUC----GGGAAAUGCCUA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN12279_c0_g1_2834_TPlot.pdf
TRINITY_DN12279_c0_g1:3355	si_a148	TRINITY_DN12279_c0_g1	3343	3364	3355	-30.30	-22.60	0.745874587458746	6.5	1-13,3364-3352;16-20,3348-3344	14-15,3351-3349[AILt];21-21,3343-3343[UP3]	.(((((...(((((((((((((&)))))))))))))-..))))).	AUGGCCGAGAGAACAACAAUGA&UCGUUGUUGUUUU-AAGGUCAA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN12279_c0_g1_3355_TPlot.pdf
TRINITY_DN12279_c0_g1:3357	si_a146	TRINITY_DN12279_c0_g1	3345	3366	3357	-29.70	-21.00	0.707070707070707	8	3-15,3364-3352;18-21,3348-3345	1-2,3366-3365[UP5];16-17,3351-3349[AILt]	((((...(((((((((((((..&..)))))))))))))-..))))	GGCCGAGAGAACAACAAUGAGG&AAUCGUUGUUGUUUU-AAGGUC	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN12279_c0_g1_3357_TPlot.pdf
TRINITY_DN12280_c0_g1:1240	si_s795	TRINITY_DN12280_c0_g1	1228	1249	1240	-30.30	-21.02	0.693729372937294	9.5	2-11,1248-1239;15-21,1234-1228	1-1,1249-1249[UP5];12-14,1238-1235[AILt]	(((((((....((((((((((.&.))))))))))-...)))))))	ACGAGGAGUCUAAUGCGAGUUC&AAGCUCGUAUU-UUAUCUUCGU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN12280_c0_g1_1240_TPlot.pdf
TRINITY_DN1228_c1_g1:1183	si_s86	TRINITY_DN1228_c1_g1	1173	1193	1183	-32.90	-21.60	0.656534954407295	7.5	1-7,1193-1187;8-16,1185-1177;18-21,1176-1173	x-x,1186-1186[BULt];17-17,x-x[BULq]	((((-(((((((((.(((((((&)))))))-))))))))).))))	GGUG-GGAAGAGGGUGAGGAAA&UUUCCUU-UCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1228_c1_g1_1183_TPlot.pdf
TRINITY_DN1228_c1_g1:1188	si_s78	TRINITY_DN1228_c1_g1	1177	1197	1188	-26.20	-17.40	0.66412213740458	10.5	4-11,1194-1187;13-21,1185-1177	1-3,1197-1195[UP5];12-12,1186-1186[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GGAAGAGGGUGAGGAAAAUGA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1228_c1_g1_1188_TPlot.pdf
TRINITY_DN1228_c1_g1:1190	si_s80	TRINITY_DN1228_c1_g1	1178	1201	1190	-28.20	-19.20	0.680851063829787	8.5	1-6,1201-1196;7-13,1193-1187;14-21,1185-1178	x-x,1195-1194[BULt];x-x,1186-1186[BULt]	((((((((.(((((((..((((((&))))))--)))))))-))))))))	GAAGAGGGUGAGGAAAAUGAAGGA&UUUUUC--UUUCCUU-UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1228_c1_g1_1190_TPlot.pdf
TRINITY_DN1228_c1_g1:156	si_a143	TRINITY_DN1228_c1_g1	145	165	156	-25.10	-16.70	0.665338645418327	13.5	6-18,160-148	1-5,165-161[UP5];19-21,147-145[UP3]	...(((((((((((((.....&.....)))))))))))))...	AUGAAGACAACGACGAGGCUA&AUUAAUCGUUGUUGUUUUAAG	3	0.999998660078045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN1228_c1_g1_156_TPlot.pdf
TRINITY_DN1228_c1_g1:16	si_a546	TRINITY_DN1228_c1_g1	2	25	16	-28.60	-20.32	0.71048951048951	6	1-14,25-12;17-21,6-2	15-16,11-7[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN1228_c1_g1_16_TPlot.pdf
TRINITY_DN1228_c1_g1:188	si_s79	TRINITY_DN1228_c1_g1	175	197	188	-26.20	-18.00	0.687022900763359	7	1-10,197-188;11-14,186-183;16-21,180-175	x-x,187-187[BULt];15-15,182-181[AILt]	((((((..((((.((((((((((&))))))))))-))))-.))))))	AGGAAGUUGAGGAAAAGGAAGAA&UUUUUUCUUU-CCUU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1228_c1_g1_188_TPlot.pdf
TRINITY_DN12292_c1_g1:234	si_s491	TRINITY_DN12292_c1_g1	223	243	234	-19.50	-14.30	0.733333333333333	8	1-7,243-237;10-21,234-223	8-9,236-235[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	GUUUUGUUUAUGAAUAGGUGA&UUAUUUAAAUAUAAACAAAAC	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN12292_c1_g1_234_TPlot.pdf
TRINITY_DN12296_c0_g1:3103	si_s88	TRINITY_DN12296_c0_g1	3092	3112	3103	-34.80	-25.60	0.735632183908046	5	3-16,3110-3097;18-21,3095-3092	1-2,3112-3111[UP5];17-17,3096-3096[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAAGAGAAGAAGAAGAAGGUU&UCCUUUCUUCUUCUUCGCUUC	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN12296_c0_g1_3103_TPlot.pdf
TRINITY_DN12299_c0_g1:72	si_s77	TRINITY_DN12299_c0_g1	61	81	72	-25.50	-18.20	0.713725490196078	10.5	1-10,81-72;13-19,69-63	11-12,71-70[SIL];20-21,62-61[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	CCGGAAAGGUUAGAGAGGAGA&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN12299_c0_g1_72_TPlot.pdf
TRINITY_DN12299_c0_g1:76	si_s73	TRINITY_DN12299_c0_g1	65	85	76	-24.00	-20.60	0.858333333333333	7	1-14,85-72;17-21,69-65	15-16,71-70[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	AAAGGUUAGAGAGGAGAUGGA&UCUAUUUUUUUUCUUUCCUUU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12299_c0_g1_76_TPlot.pdf
TRINITY_DN12299_c0_g1:78	si_s71	TRINITY_DN12299_c0_g1	67	87	78	-25.70	-19.90	0.77431906614786	7.5	2-16,86-72;19-21,69-67	1-1,87-87[UP5];17-18,71-70[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	AGGUUAGAGAGGAGAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	0	0.168155128114051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12299_c0_g1_78_TPlot.pdf
TRINITY_DN12299_c0_g1:79	si_s70	TRINITY_DN12299_c0_g1	68	88	79	-25.80	-18.60	0.72093023255814	9.5	3-17,86-72;20-21,69-68	1-2,88-87[UP5];18-19,71-70[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	GGUUAGAGAGGAGAUGGAAAA&ACUUCUAUUUUUUUUCUUUCC	4	0.999999965227629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN12299_c0_g1_79_TPlot.pdf
TRINITY_DN12299_c0_g3:1704	si_a318	TRINITY_DN12299_c0_g3	1693	1714	1704	-22.50	-16.10	0.715555555555556	7.5	1-8,1714-1707;10-19,1704-1695	9-9,1706-1705[AILt];20-21,1694-1693[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	CCAGAAAAAUCAAGGGGUAAAU&AUUUAUCC-AUGAUUUUUUUAU	4	0.99999486274582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN12299_c0_g3_1704_TPlot.pdf
TRINITY_DN12299_c0_g3:2066	si_s71	TRINITY_DN12299_c0_g3	2055	2075	2066	-25.70	-17.10	0.665369649805448	9	1-16,2075-2060	17-21,2059-2055[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACUGUAGAAGAAGAAUGGGAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12299_c0_g3_2066_TPlot.pdf
TRINITY_DN12299_c0_g3:2075	si_a778	TRINITY_DN12299_c0_g3	2064	2089	2075	-28.30	-18.70	0.660777385159011	15	3-7,2087-2083;8-21,2077-2064	1-2,2089-2088[UP5];x-x,2082-2078[BULt]	((((((((((((((.....(((((..&..)))))-----))))))))))))))	GAAGAAUGGGAGAGAGAGCUUGAAGC&GAUUCAA-----CUCUUCUAUUUUUC	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN12299_c0_g3_2075_TPlot.pdf
TRINITY_DN12299_c0_g3:2077	si_s895	TRINITY_DN12299_c0_g3	2066	2086	2077	-31.10	-20.90	0.672025723472669	7	2-15,2085-2072;17-20,2070-2067	1-1,2086-2086[UP5];16-16,2071-2071[SIL];21-21,2066-2066[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AGAAUGGGAGAGAGAGCUUGA&AUAGGCUUUCUCUUCAAUUUC	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN12299_c0_g3_2077_TPlot.pdf
TRINITY_DN12299_c0_g3:2081	si_s891	TRINITY_DN12299_c0_g3	2070	2090	2081	-29.60	-20.00	0.675675675675676	14.5	6-19,2085-2072	1-5,2090-2086[UP5];20-21,2071-2070[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGGGAGAGAGAGCUUGAAGCA&AUAAAUAGGCUUUCUCUUCAA	2	0.994764405127733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN12299_c0_g3_2081_TPlot.pdf
TRINITY_DN12299_c0_g3:2558	si_a648	TRINITY_DN12299_c0_g3	2547	2568	2558	-31.10	-21.50	0.691318327974277	10	4-7,2565-2562;9-21,2559-2547	1-3,2568-2566[UP5];8-8,2561-2560[AILt]	(((((((((((((..((((...&...))))-.)))))))))))))	CAUUUCCCGGUAUUUUUACGAC&UGAGUAA-UAUAUCGGGAAAUG	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN12299_c0_g3_2558_TPlot.pdf
TRINITY_DN12299_c0_g3:3016	si_s634	TRINITY_DN12299_c0_g3	3004	3025	3016	-38.30	-26.50	0.691906005221932	12	7-14,3019-3012;15-21,3010-3004	1-6,3025-3020[UP5];x-x,3011-3011[BULt]	(((((((.((((((((......&......))))))))-)))))))	GAGGGCAUAACGCCUAGUAUUG&UUUUCGUAGGCGUU-UGCCCUC	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN12299_c0_g3_3016_TPlot.pdf
TRINITY_DN12299_c0_g3:3246	si_a786	TRINITY_DN12299_c0_g3	3234	3255	3246	-26.60	-17.80	0.669172932330827	10.5	3-10,3253-3246;11-21,3244-3234	1-2,3255-3254[UP5];x-x,3245-3245[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GGAGGAUGGGGUAAAUGGAGUA&UCUUCUAUUU-UUCUAUUUUCC	4	0.999999999999647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN12299_c0_g3_3246_TPlot.pdf
TRINITY_DN1229_c0_g1:390	si_s69	TRINITY_DN1229_c0_g1	379	399	390	-23.40	-19.10	0.816239316239316	8	3-19,397-381	1-2,399-398[UP5];20-21,380-379[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUGAGGAAAAGAGUAGAAGGC&AACUUCUAUUUUUUUUCUUUC	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1229_c0_g1_390_TPlot.pdf
TRINITY_DN1229_c0_g1:391	si_s68	TRINITY_DN1229_c0_g1	380	400	391	-23.10	-19.10	0.826839826839827	9	4-20,397-381	1-3,400-398[UP5];21-21,380-380[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGAGGAAAAGAGUAGAAGGCG&CAACUUCUAUUUUUUUUCUUU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1229_c0_g1_391_TPlot.pdf
TRINITY_DN1229_c0_g1:472	si_s69	TRINITY_DN1229_c0_g1	461	481	472	-23.40	-15.80	0.675213675213675	8.5	3-10,479-472;12-19,470-463	1-2,481-480[UP5];11-11,471-471[SIL];20-21,462-461[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	AUGAGAAAAACAGUAGAAGGG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1229_c0_g1_472_TPlot.pdf
TRINITY_DN1229_c0_g1:475	si_s66	TRINITY_DN1229_c0_g1	464	484	475	-26.30	-17.80	0.67680608365019	7	1-3,484-482;6-13,479-472;15-21,470-464	4-5,481-480[SIL];14-14,471-471[SIL]	(((((((.((((((((..(((&)))..)))))))).)))))))	AGAAAAACAGUAGAAGGGGUU&AGCAACUUCUAUUUUUUUUCU	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN1229_c0_g1_475_TPlot.pdf
TRINITY_DN12300_c0_g1:146	si_a784	TRINITY_DN12300_c0_g1	135	155	146	-24.70	-16.20	0.65587044534413	9	2-12,154-144;15-17,141-139	1-1,155-155[UP5];13-14,143-142[SIL];18-21,138-135[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	GUGCUAGUCGAGUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN12300_c0_g1_146_TPlot.pdf
TRINITY_DN12300_c0_g1:917	si_s80	TRINITY_DN12300_c0_g1	906	926	917	-28.20	-19.50	0.691489361702128	7	1-9,926-918;11-12,916-915;14-21,913-906	10-10,917-917[SIL];13-13,914-914[SIL]	((((((((.((.(((((((((&))))))))).)).))))))))	GAAGAAGAUGGCGAAGAAGGA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN12300_c0_g1_917_TPlot.pdf
TRINITY_DN12300_c0_g1:946	si_a409	TRINITY_DN12300_c0_g1	935	955	946	-19.50	-13.90	0.712820512820513	6	1-12,955-944;14-17,942-939	13-13,943-943[SIL];18-21,938-935[UP3]	....((((.((((((((((((&)))))))))))).))))....	AGAAUUAAUUAUGAACAAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999985579703665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN12300_c0_g1_946_TPlot.pdf
TRINITY_DN12300_c0_g1:947	si_a408	TRINITY_DN12300_c0_g1	936	956	947	-20.10	-14.10	0.701492537313433	6	2-13,955-944;15-18,942-939	1-1,956-956[UP5];14-14,943-943[SIL];19-21,938-936[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	GAAUUAAUUAUGAACAAAACU&UGUUUUGUUUAUAUUUAAAUA	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN12300_c0_g1_947_TPlot.pdf
TRINITY_DN12307_c0_g1:1122	si_a198	TRINITY_DN12307_c0_g1	1114	1131	1122	-32.20	-21.50	0.667701863354037	9	1-10,1131-1122;17-21,1118-1114	11-16,1121-1119[AILq]	(((((...---((((((((((&))))))))))......)))))	GUCGACGA---GGUGAACAGG&CCUGUUCACUAAUAAAUCGAC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a198_TRINITY_DN12307_c0_g1_1122_TPlot.pdf
TRINITY_DN1230_c0_g1:2697	si_a413	TRINITY_DN1230_c0_g1	2686	2706	2697	-18.40	-12.30	0.668478260869565	10	4-19,2703-2688	1-3,2706-2704[UP5];20-21,2687-2686[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAAUUUAUUUAGGUAUGAUAA&UGUUUAUAUUUAAAUAAAUAU	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN1230_c0_g1_2697_TPlot.pdf
TRINITY_DN1230_c0_g1:3913	si_a606	TRINITY_DN1230_c0_g1	3903	3922	3913	-32.60	-21.60	0.662576687116564	5	1-11,3922-3912;14-20,3910-3904	12-13,3911-3911[AILq];21-21,3903-3903[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	AAGUCGAUA-GAAUUGUGAAA&UUUCGCAAUUCCAAUCGACUA	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN1230_c0_g1_3913_TPlot.pdf
TRINITY_DN1230_c0_g1:3914	si_a605	TRINITY_DN1230_c0_g1	3904	3923	3914	-32.20	-21.50	0.667701863354037	4	2-12,3922-3912;15-21,3910-3904	1-1,3923-3923[UP5];13-14,3911-3911[AILq]	(((((((.-(((((((((((.&.)))))))))))..)))))))	AGUCGAUA-GAAUUGUGAAAU&UUUUCGCAAUUCCAAUCGACU	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN1230_c0_g1_3914_TPlot.pdf
TRINITY_DN12319_c0_g1:707	si_a409	TRINITY_DN12319_c0_g1	696	716	707	-19.50	-12.80	0.656410256410256	4.5	1-9,716-708;11-20,706-697	10-10,707-707[SIL];21-21,696-696[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CUAUUUAAAUAAAAAUAAAAU&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN12319_c0_g1_707_TPlot.pdf
TRINITY_DN12319_c0_g1:708	si_a408	TRINITY_DN12319_c0_g1	697	717	708	-20.10	-13.50	0.671641791044776	4	1-10,717-708;12-21,706-697	11-11,707-707[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	UAUUUAAAUAAAAAUAAAAUA&UGUUUUGUUUAUAUUUAAAUA	3	0.99999999990314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN12319_c0_g1_708_TPlot.pdf
TRINITY_DN12319_c0_g1:709	si_a407	TRINITY_DN12319_c0_g1	698	718	709	-19.80	-12.90	0.651515151515151	4	1-11,718-708;13-21,706-698	12-12,707-707[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AUUUAAAUAAAAAUAAAAUAA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN12319_c0_g1_709_TPlot.pdf
TRINITY_DN1231_c0_g2:1088	si_s440	TRINITY_DN1231_c0_g2	1072	1097	1088	-21.60	-14.10	0.652777777777778	11	3-13,1095-1085;14-20,1079-1073	1-2,1097-1096[UP5];x-x,1084-1080[BULt];21-21,1072-1072[UP3]	.(((((((.....(((((((((((..&..)))))))))))-----))))))).	AUGUUAUAAUAGCUAUAGUGUGUAUC&AUUACAUAUUAUA-----UAUAACAA	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN1231_c0_g2_1088_TPlot.pdf
TRINITY_DN12320_c0_g1:769	si_a75	TRINITY_DN12320_c0_g1	758	777	769	-21.30	-14.50	0.68075117370892	8.5	1-6,777-772;10-21,769-758	7-9,771-770[AILq]	((((((((((((..-((((((&))))))...))))))))))))	UUAGUGGUGAAAUA-GAUUUG&CAAAUUGUUUUUCAUUAUUAA	2	0.999993766928481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN12320_c0_g1_769_TPlot.pdf
TRINITY_DN12323_c0_g1:14	si_s68	TRINITY_DN12323_c0_g1	3	23	14	-23.10	-15.10	0.653679653679654	13.5	6-20,18-4	1-5,23-19[UP5];21-21,3-3[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAGAGAGAAGAUGGACGCCU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12323_c0_g1_14_TPlot.pdf
TRINITY_DN1232_c0_g1:797	si_a315	TRINITY_DN1232_c0_g1	786	806	797	-27.00	-19.80	0.733333333333333	4.5	1-12,806-795;15-21,792-786	13-14,794-793[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AAGAAAUGCUGGAUGAAUCUA&UGGAUUUAUCCAUGAUUUUUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN1232_c0_g1_797_TPlot.pdf
TRINITY_DN12334_c0_g1:45	si_a877	TRINITY_DN12334_c0_g1	34	54	45	-27.00	-17.60	0.651851851851852	10	1-6,54-49;9-20,46-35	7-8,48-47[SIL];21-21,34-34[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CGUGUUGGUUGUAUAUGAGUU&GAUUUAGUUGCAAUCAAUAUA	2	0.981132633276911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN12334_c0_g1_45_TPlot.pdf
TRINITY_DN12334_c0_g1:46	si_a876	TRINITY_DN12334_c0_g1	35	55	46	-27.30	-18.30	0.67032967032967	9.5	1-7,55-49;10-21,46-35	8-9,48-47[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	GUGUUGGUUGUAUAUGAGUUU&AGAUUUAGUUGCAAUCAAUAU	0	0.0911332025703633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN12334_c0_g1_46_TPlot.pdf
TRINITY_DN12351_c0_g1:56	si_a408	TRINITY_DN12351_c0_g1	45	65	56	-20.10	-13.20	0.656716417910448	9	1-12,65-54;14-17,52-49	13-13,53-53[SIL];18-21,48-45[UP3]	....((((.((((((((((((&)))))))))))).))))....	AAAAUAAAAGUAGGCAAGACA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN12351_c0_g1_56_TPlot.pdf
TRINITY_DN12351_c0_g1:61	si_a403	TRINITY_DN12351_c0_g1	50	70	61	-22.00	-14.50	0.659090909090909	11.5	4-17,67-54	1-3,70-68[UP5];18-21,53-50[UP3]	....((((((((((((((...&...))))))))))))))....	AAAAGUAGGCAAGACAAUGGU&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN12351_c0_g1_61_TPlot.pdf
TRINITY_DN12358_c1_g1:1507	si_a399	TRINITY_DN12358_c1_g1	1497	1516	1507	-22.60	-14.70	0.650442477876106	7	3-14,1514-1503;16-19,1502-1499	1-2,1516-1515[UP5];15-15,x-x[BULq];20-21,1498-1497[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	UGGGAC-AAACAAUUCUAUCC&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999999151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN12358_c1_g1_1507_TPlot.pdf
TRINITY_DN12358_c1_g1:1508	si_a398	TRINITY_DN12358_c1_g1	1498	1517	1508	-22.40	-14.70	0.65625	8	4-15,1514-1503;17-20,1502-1499	1-3,1517-1515[UP5];16-16,x-x[BULq];21-21,1498-1498[UP3]	.((((-((((((((((((...&...)))))))))))).)))).	GGGAC-AAACAAUUCUAUCCG&AAUAUAGAAUUGUUUUGUUUA	2	0.999999722426073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN12358_c1_g1_1508_TPlot.pdf
TRINITY_DN12358_c1_g1:1578	si_a222	TRINITY_DN12358_c1_g1	1567	1588	1578	-25.20	-16.90	0.670634920634921	10	1-7,1588-1582;8-16,1580-1572	x-x,1581-1581[BULt];17-21,1571-1567[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	AAAAAGGAGGCAUGAAGUUUGA&UUAAACU-CAUGUUUCUAUAAU	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN12358_c1_g1_1578_TPlot.pdf
TRINITY_DN12358_c1_g1:1579	si_a221	TRINITY_DN12358_c1_g1	1568	1589	1579	-25.20	-18.20	0.722222222222222	8.5	1-8,1589-1582;9-17,1580-1572	x-x,1581-1581[BULt];18-21,1571-1568[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	AAAAGGAGGCAUGAAGUUUGAU&AUUAAACU-CAUGUUUCUAUAA	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN12358_c1_g1_1579_TPlot.pdf
TRINITY_DN12358_c1_g1:1580	si_a220	TRINITY_DN12358_c1_g1	1569	1590	1580	-25.10	-18.50	0.737051792828685	8.5	2-9,1589-1582;10-18,1580-1572	1-1,1590-1590[UP5];x-x,1581-1581[BULt];19-21,1571-1569[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AAAGGAGGCAUGAAGUUUGAUG&AAUUAAACU-CAUGUUUCUAUA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN12358_c1_g1_1580_TPlot.pdf
TRINITY_DN12358_c1_g1:1582	si_a219	TRINITY_DN12358_c1_g1	1570	1591	1582	-25.10	-18.50	0.737051792828685	9.5	3-10,1589-1582;11-19,1580-1572	1-2,1591-1590[UP5];x-x,1581-1581[BULt];20-21,1571-1570[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	AAGGAGGCAUGAAGUUUGAUGA&UAAUUAAACU-CAUGUUUCUAU	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN12358_c1_g1_1582_TPlot.pdf
TRINITY_DN12358_c1_g1:1583	si_a218	TRINITY_DN12358_c1_g1	1571	1592	1583	-26.60	-19.20	0.721804511278195	7.5	1-2,1592-1591;4-11,1589-1582;12-20,1580-1572	3-3,1590-1590[SIL];x-x,1581-1581[BULt];21-21,1571-1571[UP3]	.(((((((((.((((((((.((&)).))))))))-))))))))).	AGGAGGCAUGAAGUUUGAUGAG&CUAAUUAAACU-CAUGUUUCUA	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN12358_c1_g1_1583_TPlot.pdf
TRINITY_DN12358_c1_g1:1584	si_a217	TRINITY_DN12358_c1_g1	1572	1593	1584	-27.00	-18.70	0.692592592592593	7.5	2-3,1592-1591;5-12,1589-1582;13-21,1580-1572	1-1,1593-1593[UP5];4-4,1590-1590[SIL];x-x,1581-1581[BULt]	(((((((((.((((((((.((.&.)).))))))))-)))))))))	GGAGGCAUGAAGUUUGAUGAGA&ACUAAUUAAACU-CAUGUUUCU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a217_TRINITY_DN12358_c1_g1_1584_TPlot.pdf
TRINITY_DN12358_c1_g1:1778	si_a485	TRINITY_DN12358_c1_g1	1767	1787	1778	-26.60	-17.40	0.654135338345865	7.5	1-6,1787-1782;8-18,1780-1770	7-7,1781-1781[SIL];19-21,1769-1767[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	AAUUGACGUAUUCUUUGUAAU&GUUAUAUAGAAUAUGUCGUUU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN12358_c1_g1_1778_TPlot.pdf
TRINITY_DN12358_c1_g1:1779	si_a484	TRINITY_DN12358_c1_g1	1768	1788	1779	-27.30	-18.40	0.673992673992674	7	1-7,1788-1782;9-19,1780-1770	8-8,1781-1781[SIL];20-21,1769-1768[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	AUUGACGUAUUCUUUGUAAUA&UGUUAUAUAGAAUAUGUCGUU	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN12358_c1_g1_1779_TPlot.pdf
TRINITY_DN12358_c1_g1:1780	si_a483	TRINITY_DN12358_c1_g1	1769	1789	1780	-27.40	-19.30	0.704379562043796	6	1-8,1789-1782;10-20,1780-1770	9-9,1781-1781[SIL];21-21,1769-1769[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	UUGACGUAUUCUUUGUAAUAA&UUGUUAUAUAGAAUAUGUCGU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN12358_c1_g1_1780_TPlot.pdf
TRINITY_DN12358_c1_g1:1781	si_a482	TRINITY_DN12358_c1_g1	1770	1790	1781	-26.70	-19.30	0.722846441947566	6	2-9,1789-1782;11-21,1780-1770	1-1,1790-1790[UP5];10-10,1781-1781[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UGACGUAUUCUUUGUAAUAAA&AUUGUUAUAUAGAAUAUGUCG	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN12358_c1_g1_1781_TPlot.pdf
TRINITY_DN12358_c1_g1:1782	si_a481	TRINITY_DN12358_c1_g1	1771	1791	1782	-25.60	-18.60	0.7265625	7.5	3-10,1789-1782;12-21,1780-1771	1-2,1791-1790[UP5];11-11,1781-1781[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	GACGUAUUCUUUGUAAUAAAG&UAUUGUUAUAUAGAAUAUGUC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN12358_c1_g1_1782_TPlot.pdf
TRINITY_DN12358_c1_g1:1783	si_a480	TRINITY_DN12358_c1_g1	1772	1792	1783	-23.70	-15.60	0.658227848101266	9.5	4-11,1789-1782;13-21,1780-1772	1-3,1792-1790[UP5];12-12,1781-1781[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	ACGUAUUCUUUGUAAUAAAGA&UUAUUGUUAUAUAGAAUAUGU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN12358_c1_g1_1783_TPlot.pdf
TRINITY_DN1235_c0_g1:1674	si_a331	TRINITY_DN1235_c0_g1	1662	1687	1674	-30.60	-20.20	0.660130718954248	14.5	1-8,1687-1680;9-11,1675-1673;12-19,1671-1664	x-x,1679-1676[BULt];x-x,1672-1672[BULt];20-21,1663-1662[UP3]	..((((((((.(((....((((((((&))))))))----)))-))))))))..	UCCGGGGCAAUGGAGGGUAUGAAGAA&UUUUUUAU----UCC-UUGUCCCGAA	3	0.99999899076026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN1235_c0_g1_1674_TPlot.pdf
TRINITY_DN1235_c0_g1:1675	si_a330	TRINITY_DN1235_c0_g1	1663	1688	1675	-30.50	-21.10	0.691803278688525	13.5	1-9,1688-1680;10-12,1675-1673;13-20,1671-1664	x-x,1679-1676[BULt];x-x,1672-1672[BULt];21-21,1663-1663[UP3]	.((((((((.(((....(((((((((&)))))))))----)))-)))))))).	CCGGGGCAAUGGAGGGUAUGAAGAAA&UUUUUUUAU----UCC-UUGUCCCGA	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN1235_c0_g1_1675_TPlot.pdf
TRINITY_DN1235_c0_g1:1680	si_a329	TRINITY_DN1235_c0_g1	1664	1689	1680	-29.60	-20.30	0.685810810810811	12.5	2-10,1688-1680;11-13,1675-1673;14-21,1671-1664	1-1,1689-1689[UP5];x-x,1679-1676[BULt];x-x,1672-1672[BULt]	((((((((.(((....(((((((((.&.)))))))))----)))-))))))))	CGGGGCAAUGGAGGGUAUGAAGAAAG&AUUUUUUUAU----UCC-UUGUCCCG	2	0.997697409833658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1235_c0_g1_1680_TPlot.pdf
TRINITY_DN1235_c0_g1:1743	si_s93	TRINITY_DN1235_c0_g1	1732	1753	1743	-34.80	-24.30	0.698275862068966	8.5	1-9,1753-1745;10-18,1743-1735	x-x,1744-1744[BULt];19-21,1734-1732[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	UCACUGAAGUGACGGAAGAGGA&UCUUCUUCU-UCGCUUCGGAUU	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1235_c0_g1_1743_TPlot.pdf
TRINITY_DN1235_c0_g1:1745	si_s92	TRINITY_DN1235_c0_g1	1733	1754	1745	-34.90	-25.20	0.722063037249284	7	1-10,1754-1745;11-19,1743-1735	x-x,1744-1744[BULt];20-21,1734-1733[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	CACUGAAGUGACGGAAGAGGAA&UUCUUCUUCU-UCGCUUCGGAU	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1235_c0_g1_1745_TPlot.pdf
TRINITY_DN1235_c0_g1:1746	si_s91	TRINITY_DN1235_c0_g1	1734	1755	1746	-34.70	-26.10	0.752161383285303	6	1-11,1755-1745;12-20,1743-1735	x-x,1744-1744[BULt];21-21,1734-1734[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	ACUGAAGUGACGGAAGAGGAAA&UUUCUUCUUCU-UCGCUUCGGA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN1235_c0_g1_1746_TPlot.pdf
TRINITY_DN1235_c0_g1:1747	si_s90	TRINITY_DN1235_c0_g1	1735	1756	1747	-35.30	-26.30	0.745042492917847	6	2-12,1755-1745;13-21,1743-1735	1-1,1756-1756[UP5];x-x,1744-1744[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	CUGAAGUGACGGAAGAGGAAAA&CUUUCUUCUUCU-UCGCUUCGG	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1235_c0_g1_1747_TPlot.pdf
TRINITY_DN1235_c0_g1:1748	si_s89	TRINITY_DN1235_c0_g1	1736	1758	1748	-35.30	-25.50	0.722379603399434	5.5	1-5,1758-1754;6-13,1752-1745;14-21,1743-1736	x-x,1753-1753[BULt];x-x,1744-1744[BULt]	((((((((.((((((((.(((((&)))))-))))))))-))))))))	UGAAGUGACGGAAGAGGAAAAGG&CCUUU-CUUCUUCU-UCGCUUCG	3	0.999947712872037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1235_c0_g1_1748_TPlot.pdf
TRINITY_DN1235_c0_g1:1750	si_s87	TRINITY_DN1235_c0_g1	1738	1760	1750	-32.90	-23.20	0.70516717325228	6	2-7,1759-1754;8-15,1752-1745;16-21,1743-1738	1-1,1760-1760[UP5];x-x,1753-1753[BULt];x-x,1744-1744[BULt]	((((((.((((((((.((((((.&.))))))-))))))))-))))))	AAGUGACGGAAGAGGAAAAGGAC&UUCCUUU-CUUCUUCU-UCGCUU	4	0.99999999931149	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1235_c0_g1_1750_TPlot.pdf
TRINITY_DN1235_c0_g1:1751	si_s86	TRINITY_DN1235_c0_g1	1739	1761	1751	-32.90	-22.30	0.677811550151976	8	3-8,1759-1754;9-16,1752-1745;17-21,1743-1739	1-2,1761-1760[UP5];x-x,1753-1753[BULt];x-x,1744-1744[BULt]	(((((.((((((((.((((((..&..))))))-))))))))-)))))	AGUGACGGAAGAGGAAAAGGACG&UUUCCUUU-CUUCUUCU-UCGCU	2	0.999999999936083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1235_c0_g1_1751_TPlot.pdf
TRINITY_DN1235_c0_g1:596	si_a503	TRINITY_DN1235_c0_g1	585	605	596	-32.10	-21.20	0.660436137071651	9.5	2-15,604-591;17-17,589-589	1-1,605-605[UP5];16-16,590-590[SIL];18-21,588-585[UP3]	....(.((((((((((((((.&.)))))))))))))).)....	AAACCGGAGGAAGAUGAGGAU&UUUUUCGUCUUCCUUGGAAUG	4	0.999999997524107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1235_c0_g1_596_TPlot.pdf
TRINITY_DN1235_c0_g1:598	si_s90	TRINITY_DN1235_c0_g1	588	607	598	-35.30	-23.20	0.657223796033994	7.5	1-2,607-606;4-8,604-600;10-14,598-594;16-21,593-588	3-3,605-605[SIL];9-9,599-599[SIL];15-15,x-x[BULq]	((((((-(((((.(((((.((&)).))))).))))).))))))	CCGGAG-GAAGAUGAGGAUGG&CUUUCUUCUUCUUCGCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1235_c0_g1_598_TPlot.pdf
TRINITY_DN1235_c0_g1:599	si_a500	TRINITY_DN1235_c0_g1	588	608	599	-34.40	-22.90	0.665697674418605	9.5	1-2,608-607;5-18,604-591;20-20,589-589	3-4,606-605[SIL];19-19,590-590[SIL];21-21,588-588[UP3]	.(.((((((((((((((..((&))..)))))))))))))).).	CCGGAGGAAGAUGAGGAUGGA&UCGUUUUUCGUCUUCCUUGGA	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1235_c0_g1_599_TPlot.pdf
TRINITY_DN1235_c0_g1:601	si_s82	TRINITY_DN1235_c0_g1	589	610	601	-28.90	-22.00	0.761245674740484	9	1-5,610-606;7-11,604-600;12-20,598-590	6-6,605-605[SIL];x-x,599-599[BULt];21-21,589-589[UP3]	.(((((((((.(((((.(((((&))))).)))))-))))))))).	CGGAGGAAGAUGAGGAUGGAGA&UUUCUUUCCUU-UCUUCUUCUU	3	0.999999869376044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1235_c0_g1_601_TPlot.pdf
TRINITY_DN1235_c0_g1:602	si_s81	TRINITY_DN1235_c0_g1	590	611	602	-28.90	-22.90	0.792387543252595	8	1-6,611-606;8-12,604-600;13-21,598-590	7-7,605-605[SIL];x-x,599-599[BULt]	(((((((((.(((((.((((((&)))))).)))))-)))))))))	GGAGGAAGAUGAGGAUGGAGAA&UUUUCUUUCCUU-UCUUCUUCU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1235_c0_g1_602_TPlot.pdf
TRINITY_DN1235_c0_g1:603	si_s80	TRINITY_DN1235_c0_g1	591	612	603	-28.20	-21.90	0.776595744680851	7	2-7,611-606;9-13,604-600;14-21,598-591	1-1,612-612[UP5];8-8,605-605[SIL];x-x,599-599[BULt]	((((((((.(((((.((((((.&.)))))).)))))-))))))))	GAGGAAGAUGAGGAUGGAGAAG&UUUUUCUUUCCUU-UCUUCUUC	3	0.999996864296552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1235_c0_g1_603_TPlot.pdf
TRINITY_DN1235_c0_g1:607	si_s76	TRINITY_DN1235_c0_g1	595	616	607	-23.60	-17.20	0.728813559322034	8.5	2-11,615-606;13-17,604-600;18-21,598-595	1-1,616-616[UP5];12-12,605-605[SIL];x-x,599-599[BULt]	((((.(((((.((((((((((.&.)))))))))).)))))-))))	AAGAUGAGGAUGGAGAAGAGAA&AUUUUUUUUCUUUCCUU-UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1235_c0_g1_607_TPlot.pdf
TRINITY_DN1235_c0_g1:608	si_s75	TRINITY_DN1235_c0_g1	596	617	608	-24.00	-16.30	0.679166666666667	9.5	3-12,615-606;14-18,604-600;19-21,598-596	1-2,617-616[UP5];13-13,605-605[SIL];x-x,599-599[BULt]	(((.(((((.((((((((((..&..)))))))))).)))))-)))	AGAUGAGGAUGGAGAAGAGAAA&UAUUUUUUUUCUUUCCUU-UCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1235_c0_g1_608_TPlot.pdf
TRINITY_DN1235_c0_g1:611	si_a792	TRINITY_DN1235_c0_g1	601	620	611	-27.60	-18.50	0.670289855072464	5	1-8,620-613;10-16,611-605;18-20,604-602	9-9,612-612[SIL];17-17,x-x[BULq];21-21,601-601[UP3]	.(((-(((((((.((((((((&)))))))).))))))).))).	AGGA-UGGAGAAGAGAAAAAU&AUUUUUCUAUUUUCCAAUCCG	2	0.998565120328725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN1235_c0_g1_611_TPlot.pdf
TRINITY_DN1235_c0_g1:612	si_a791	TRINITY_DN1235_c0_g1	602	621	612	-26.50	-18.60	0.70188679245283	4	1-9,621-613;11-17,611-605;19-21,604-602	10-10,612-612[SIL];18-18,x-x[BULq]	(((-(((((((.(((((((((&))))))))).))))))).)))	GGA-UGGAGAAGAGAAAAAUG&UAUUUUUCUAUUUUCCAAUCC	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1235_c0_g1_612_TPlot.pdf
TRINITY_DN1235_c0_g1:614	si_a789	TRINITY_DN1235_c0_g1	603	624	614	-24.80	-16.40	0.661290322580645	6.5	1-3,624-622;4-11,620-613;13-19,611-605	x-x,621-621[BULt];12-12,612-612[SIL];20-21,604-603[UP3]	..(((((((.((((((((.(((&)))-)))))))).)))))))..	GAUGGAGAAGAGAAAAAUGAGA&UCU-AUUUUUCUAUUUUCCAAU	2	0.999999972584635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1235_c0_g1_614_TPlot.pdf
TRINITY_DN1235_c0_g1:625	si_s68	TRINITY_DN1235_c0_g1	611	635	625	-23.10	-15.90	0.688311688311688	8	1-7,635-629;8-14,627-621;15-21,617-611	x-x,628-628[BULt];x-x,620-618[BULt]	(((((((...(((((((.(((((((&)))))))-)))))))---)))))))	AGAGAAAAAUGAGAAUGUGAAGUUG&CAACUUC-UAUUUUU---UUUCUUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1235_c0_g1_625_TPlot.pdf
TRINITY_DN1235_c0_g1:626	si_s67	TRINITY_DN1235_c0_g1	612	636	626	-25.60	-16.90	0.66015625	8	1-8,636-629;9-15,627-621;16-21,617-612	x-x,628-628[BULt];x-x,620-618[BULt]	((((((...(((((((.((((((((&))))))))-)))))))---))))))	GAGAAAAAUGAGAAUGUGAAGUUGU&GCAACUUC-UAUUUUU---UUUCUU	3	0.999999999999685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1235_c0_g1_626_TPlot.pdf
TRINITY_DN1235_c0_g1:752	si_a782	TRINITY_DN1235_c0_g1	743	761	752	-26.40	-18.00	0.681818181818182	7.5	1-10,761-752;13-19,751-745	11-12,x-x[BULq];20-21,744-743[UP3]	..(((((((--((((((((((&))))))))))..)))))))..	UCUAGAAGA--AGAAGGGUUG&CAACUCUUCUAUUUUUCUAUU	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1235_c0_g1_752_TPlot.pdf
TRINITY_DN1235_c0_g1:754	si_a780	TRINITY_DN1235_c0_g1	745	763	754	-27.30	-17.90	0.655677655677656	6.5	3-12,761-752;15-21,751-745	1-2,763-762[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	UAGAAGA--AGAAGGGUUGUA&UUCAACUCUUCUAUUUUUCUA	3	0.999999925894147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1235_c0_g1_754_TPlot.pdf
TRINITY_DN1235_c0_g1:757	si_s81	TRINITY_DN1235_c0_g1	746	766	757	-28.90	-18.80	0.650519031141869	16	9-21,758-746	1-8,766-759[UP5]	(((((((((((((........&........)))))))))))))	AGAAGAAGAAGGGUUGUACAC&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1235_c0_g1_757_TPlot.pdf
TRINITY_DN12361_c0_g2:1287	si_a769	TRINITY_DN12361_c0_g2	1274	1298	1287	-26.70	-18.30	0.685393258426966	11.5	2-8,1297-1291;9-12,1288-1285;13-21,1282-1274	1-1,1298-1298[UP5];x-x,1290-1289[BULt];x-x,1284-1283[BULt]	(((((((((..((((..(((((((.&.)))))))--))))--)))))))))	GAGAGUUGAUGAUCAGAGUCAAGAC&UUUUUGAU--UGAU--UCAACUCUU	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN12361_c0_g2_1287_TPlot.pdf
TRINITY_DN12361_c0_g2:1620	si_s79	TRINITY_DN12361_c0_g2	1609	1629	1620	-26.20	-17.90	0.683206106870229	8.5	4-11,1626-1619;13-21,1617-1609	1-3,1629-1627[UP5];12-12,1618-1618[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAGAAGAGAAGGAAGAAAUAU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12361_c0_g2_1620_TPlot.pdf
TRINITY_DN12361_c0_g2:2048	si_a66	TRINITY_DN12361_c0_g2	2036	2057	2048	-26.70	-18.30	0.685393258426966	3.5	1-2,2057-2056;4-15,2054-2043;16-21,2041-2036	3-3,2055-2055[SIL];x-x,2042-2042[BULt]	((((((.((((((((((((.((&)).))))))))))))-))))))	AAAAGCAAAUUUGAAAGAACCG&CGCUUCUUUCAAAUU-GUUUUU	3	0.999999985909541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN12361_c0_g2_2048_TPlot.pdf
TRINITY_DN12361_c0_g2:3460	si_a327	TRINITY_DN12361_c0_g2	3448	3469	3460	-28.40	-18.70	0.658450704225352	5.5	1-9,3469-3461;11-15,3459-3455;16-20,3453-3449	10-10,3460-3460[SIL];x-x,3454-3454[BULt];21-21,3448-3448[UP3]	.(((((.(((((.(((((((((&))))))))).)))))-))))).	UGACAACGGGAUUGAAAAAUCA&UGAUUUUUUUAUUCC-UUGUCC	3	0.999999998480056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN12361_c0_g2_3460_TPlot.pdf
TRINITY_DN12361_c0_g2:3951	si_a786	TRINITY_DN12361_c0_g2	3940	3960	3951	-26.60	-17.70	0.665413533834586	8.5	1-15,3960-3946	16-21,3945-3940[UP3]	......(((((((((((((((&)))))))))))))))......	AGCUCUUGGAAGAAUGGAAGA&UCUUCUAUUUUUCUAUUUUCC	2	0.999999995545273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN12361_c0_g2_3951_TPlot.pdf
TRINITY_DN12361_c0_g2:3953	si_a784	TRINITY_DN12361_c0_g2	3942	3962	3953	-24.70	-17.90	0.724696356275304	9.5	3-17,3960-3946	1-2,3962-3961[UP5];18-21,3945-3942[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUCUUGGAAGAAUGGAAGAAC&ACUCUUCUAUUUUUCUAUUUU	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN12361_c0_g2_3953_TPlot.pdf
TRINITY_DN12361_c0_g2:3954	si_a783	TRINITY_DN12361_c0_g2	3943	3963	3954	-24.70	-17.90	0.724696356275304	10	4-18,3960-3946	1-3,3963-3961[UP5];19-21,3945-3943[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCUUGGAAGAAUGGAAGAACU&AACUCUUCUAUUUUUCUAUUU	2	0.998922310314455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN12361_c0_g2_3954_TPlot.pdf
TRINITY_DN12361_c0_g2:3955	si_a782	TRINITY_DN12361_c0_g2	3944	3964	3955	-26.40	-17.90	0.678030303030303	11	5-19,3960-3946	1-4,3964-3961[UP5];20-21,3945-3944[UP3]	..(((((((((((((((....&....)))))))))))))))..	CUUGGAAGAAUGGAAGAACUU&CAACUCUUCUAUUUUUCUAUU	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN12361_c0_g2_3955_TPlot.pdf
TRINITY_DN12361_c0_g2:3956	si_a781	TRINITY_DN12361_c0_g2	3945	3965	3956	-27.40	-17.90	0.653284671532847	12	6-20,3960-3946	1-5,3965-3961[UP5];21-21,3945-3945[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUGGAAGAAUGGAAGAACUUA&UCAACUCUUCUAUUUUUCUAU	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN12361_c0_g2_3956_TPlot.pdf
TRINITY_DN12361_c0_g2:4100	si_a783	TRINITY_DN12361_c0_g2	4087	4109	4100	-24.70	-17.36	0.702834008097166	10.5	1-11,4109-4099;15-21,4093-4087	12-14,4098-4094[AILt]	(((((((.....(((((((((((&)))))))))))--...)))))))	AAAUGGAUAGAUAUAGGGGAGUU&AACUCUUCUAU--UUUUCUAUUU	4	0.99999996863755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN12361_c0_g2_4100_TPlot.pdf
TRINITY_DN12361_c0_g2:4108	si_a775	TRINITY_DN12361_c0_g2	4097	4117	4108	-27.20	-17.80	0.654411764705882	12	6-19,4112-4099	1-5,4117-4113[UP5];20-21,4098-4097[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUAUAGGGGAGUUGAAAGCAG&AUUGAUUCAACUCUUCUAUUU	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN12361_c0_g2_4108_TPlot.pdf
TRINITY_DN12361_c0_g2:5278	si_a68	TRINITY_DN12361_c0_g2	5267	5287	5278	-25.40	-17.30	0.681102362204724	7.5	4-11,5284-5277;13-21,5275-5267	1-3,5287-5285[UP5];12-12,5276-5276[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UGAGAAACACUUUGAAAGCGA&CUUCUUUCAAAUUGUUUUUCA	4	0.999999995494812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN12361_c0_g2_5278_TPlot.pdf
TRINITY_DN12361_c0_g2:6142	si_a352	TRINITY_DN12361_c0_g2	6130	6151	6142	-22.50	-16.50	0.733333333333333	3	1-17,6151-6135;19-19,6133-6133;20-21,6131-6130	18-18,6134-6134[SIL];x-x,6132-6132[BULt]	((.(.(((((((((((((((((&))))))))))))))))).)-))	GACUGAAAAUAGAAUUGAUAUU&AAUAUUAAUUCUAUUUUGA-UC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN12361_c0_g2_6142_TPlot.pdf
TRINITY_DN12361_c0_g2:757	si_a349	TRINITY_DN12361_c0_g2	746	766	757	-21.30	-15.80	0.741784037558685	5.5	1-2,766-765;4-19,763-748	3-3,764-764[SIL];20-21,747-746[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	ACAAAUGGAAUUAAUGUUAUC&GAAAAUAUUAAUUCUAUUUUG	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN12361_c0_g2_757_TPlot.pdf
TRINITY_DN12364_c0_g1:44	si_a487	TRINITY_DN12364_c0_g1	32	53	44	-24.80	-16.30	0.657258064516129	7.5	1-10,53-44;12-15,42-39;16-20,37-33	11-11,43-43[SIL];x-x,38-38[BULt];21-21,32-32[UP3]	.(((((.((((.((((((((((&)))))))))).))))-))))).	CAAAGCGGACGCAUUCUGUGUA&UAUAUAGAAUAUGUC-GUUUUU	4	0.999888699892308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN12364_c0_g1_44_TPlot.pdf
TRINITY_DN12364_c0_g1:45	si_a486	TRINITY_DN12364_c0_g1	33	54	45	-24.90	-16.50	0.662650602409639	7	2-11,53-44;13-16,42-39;17-21,37-33	1-1,54-54[UP5];12-12,43-43[SIL];x-x,38-38[BULt]	(((((.((((.((((((((((.&.)))))))))).))))-)))))	AAAGCGGACGCAUUCUGUGUAU&UUAUAUAGAAUAUGUC-GUUUU	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN12364_c0_g1_45_TPlot.pdf
TRINITY_DN12365_c0_g1:235	si_s74	TRINITY_DN12365_c0_g1	224	245	235	-25.00	-18.90	0.756	7.5	2-7,244-239;8-21,237-224	1-1,245-245[UP5];x-x,238-238[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	GAAGGGGGAGAAAGCGAAAUGA&CUAUUUU-UUUUCUUUCCUUUC	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12365_c0_g1_235_TPlot.pdf
TRINITY_DN12365_c0_g1:366	si_s811	TRINITY_DN12365_c0_g1	355	376	366	-26.40	-17.40	0.659090909090909	9.5	2-6,375-371;7-16,369-360	1-1,376-376[UP5];x-x,370-370[BULt];17-21,359-355[UP3]	.....((((((((((.(((((.&.)))))-)))))))))).....	AGACGAAGGAAAGGUAGACGAC&UUCGUU-ACCUUUUCUUAAUAA	4	0.999999971123102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN12365_c0_g1_366_TPlot.pdf
TRINITY_DN12365_c0_g1:369	si_s808	TRINITY_DN12365_c0_g1	358	382	369	-28.60	-21.10	0.737762237762238	12.5	2-9,381-374;10-19,369-360	1-1,382-382[UP5];x-x,373-370[BULt];20-21,359-358[UP3]	..((((((((((....((((((((.&.))))))))----))))))))))..	CGAAGGAAAGGUAGACGACGAAGAG&AUCUUCGUU----ACCUUUUCUUAA	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN12365_c0_g1_369_TPlot.pdf
TRINITY_DN12365_c0_g1:396	si_a400	TRINITY_DN12365_c0_g1	385	405	396	-22.80	-16.60	0.728070175438597	10.5	3-20,403-386	1-2,405-404[UP5];21-21,385-385[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGUAAGCGAGGCGAUUUUGAU&UAUAGAAUUGUUUUGUUUAUA	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN12365_c0_g1_396_TPlot.pdf
TRINITY_DN12365_c0_g1:475	si_a494	TRINITY_DN12365_c0_g1	464	486	475	-29.50	-20.30	0.688135593220339	12	3-5,484-482;7-9,480-478;10-21,475-464	1-2,486-485[UP5];6-6,481-481[SIL];x-x,477-476[BULt]	((((((((((((..(((.(((..&..))).)))--))))))))))))	GAAGACGAAGGAGCCGAGGUAGA&AAUAUGUCG--UUUUUCGUCUUC	4	0.999999602727879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN12365_c0_g1_475_TPlot.pdf
TRINITY_DN12365_c0_g1:534	si_s796	TRINITY_DN12365_c0_g1	523	547	534	-30.30	-21.36	0.704950495049505	15	1-7,547-541;10-21,534-523	8-9,540-535[AILt]	((((((((((((......(((((((&)))))))----..))))))))))))	GACGAAGGUGAAUCAGCGACGAGUU&AGCUCGU----AUUUUAUCUUCGUU	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN12365_c0_g1_534_TPlot.pdf
TRINITY_DN12365_c0_g3:104	si_a496	TRINITY_DN12365_c0_g3	91	113	104	-32.40	-21.90	0.675925925925926	11	1-3,113-111;5-11,109-103;12-19,100-93	4-4,110-110[SIL];x-x,102-101[BULt];20-21,92-91[UP3]	..((((((((..(((((((.(((&))).)))))))--))))))))..	ACGAAGACGAAGGAGACGAGGUA&UAUGUCGUUUU--UCGUCUUCCU	2	0.999988812039697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN12365_c0_g3_104_TPlot.pdf
TRINITY_DN12365_c0_g3:106	si_a494	TRINITY_DN12365_c0_g3	93	115	106	-29.50	-21.90	0.742372881355932	9.5	3-5,113-111;7-13,109-103;14-21,100-93	1-2,115-114[UP5];6-6,110-110[SIL];x-x,102-101[BULt]	((((((((..(((((((.(((..&..))).)))))))--))))))))	GAAGACGAAGGAGACGAGGUAGG&AAUAUGUCGUUUU--UCGUCUUC	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN12365_c0_g3_106_TPlot.pdf
TRINITY_DN12365_c0_g4:36	si_a497	TRINITY_DN12365_c0_g4	24	45	36	-32.00	-20.90	0.653125	11	3-5,43-41;7-10,39-36;11-21,34-24	1-2,45-44[UP5];6-6,40-40[SIL];x-x,35-35[BULt]	(((((((((((.((((.(((..&..))).))))-)))))))))))	AGGGGAGACGACGAAGAGGCCG&AUGUCGUUUU-UCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN12365_c0_g4_36_TPlot.pdf
TRINITY_DN12365_c0_g4:95	si_s796	TRINITY_DN12365_c0_g4	83	105	95	-30.30	-20.00	0.66006600660066	9	1-6,105-100;7-12,98-93;14-19,90-85	x-x,99-99[BULt];13-13,92-91[AILt];20-21,84-83[UP3]	..((((((..((((((.((((((&))))))-))))))-.))))))..	ACCGAAGAAAGAAGUACCGAGCU&AGCUCG-UAUUUU-AUCUUCGUU	3	0.99999919223585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN12365_c0_g4_95_TPlot.pdf
TRINITY_DN12373_c0_g1:109	si_a404	TRINITY_DN12373_c0_g1	95	118	109	-21.70	-17.30	0.797235023041475	8	1-13,118-106;14-20,102-96	x-x,105-103[BULt];21-21,95-95[UP3]	.(((((((...(((((((((((((&)))))))))))))---))))))).	AGAAUGUAAUUAACAAAGCGGUUC&GAAUUGUUUUGUU---UAUAUUUA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN12373_c0_g1_109_TPlot.pdf
TRINITY_DN12373_c0_g1:110	si_a403	TRINITY_DN12373_c0_g1	96	119	110	-22.00	-16.90	0.768181818181818	8	2-14,118-106;15-21,102-96	1-1,119-119[UP5];x-x,105-103[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	GAAUGUAAUUAACAAAGCGGUUCA&AGAAUUGUUUUGUU---UAUAUUU	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN12373_c0_g1_110_TPlot.pdf
TRINITY_DN12373_c0_g1:111	si_a402	TRINITY_DN12373_c0_g1	97	120	111	-22.40	-15.80	0.705357142857143	9.5	3-15,118-106;16-21,102-97	1-2,120-119[UP5];x-x,105-103[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	AAUGUAAUUAACAAAGCGGUUCAA&UAGAAUUGUUUUGUU---UAUAUU	4	0.999969681393287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN12373_c0_g1_111_TPlot.pdf
TRINITY_DN12373_c0_g1:112	si_a401	TRINITY_DN12373_c0_g1	98	121	112	-22.60	-14.90	0.65929203539823	11.5	4-16,118-106;17-21,102-98	1-3,121-119[UP5];x-x,105-103[BULt]	(((((...(((((((((((((...&...)))))))))))))---)))))	AUGUAAUUAACAAAGCGGUUCAAG&AUAGAAUUGUUUUGUU---UAUAU	3	0.99999999998003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN12373_c0_g1_112_TPlot.pdf
TRINITY_DN12373_c0_g1:1151	si_a152	TRINITY_DN12373_c0_g1	1140	1160	1151	-29.20	-19.40	0.664383561643836	7	1-15,1160-1146	16-21,1145-1140[UP3]	......(((((((((((((((&)))))))))))))))......	UACUCAGACUUUAAAACAACA&UGUUGUUUUAAGGUCAAUCUA	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN12373_c0_g1_1151_TPlot.pdf
TRINITY_DN12373_c0_g1:1154	si_a149	TRINITY_DN12373_c0_g1	1143	1163	1154	-29.40	-20.30	0.690476190476191	6.5	3-18,1161-1146	1-2,1163-1162[UP5];19-21,1145-1143[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCAGACUUUAAAACAACAAAU&CGUUGUUGUUUUAAGGUCAAU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN12373_c0_g1_1154_TPlot.pdf
TRINITY_DN12373_c0_g1:1155	si_a148	TRINITY_DN12373_c0_g1	1144	1164	1155	-30.30	-20.30	0.66996699669967	7.5	4-19,1161-1146	1-3,1164-1162[UP5];20-21,1145-1144[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAGACUUUAAAACAACAAAUU&UCGUUGUUGUUUUAAGGUCAA	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN12373_c0_g1_1155_TPlot.pdf
TRINITY_DN12373_c0_g1:1156	si_a147	TRINITY_DN12373_c0_g1	1145	1165	1156	-30.40	-20.30	0.667763157894737	8.5	5-20,1161-1146	1-4,1165-1162[UP5];21-21,1145-1145[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGACUUUAAAACAACAAAUUC&AUCGUUGUUGUUUUAAGGUCA	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN12373_c0_g1_1156_TPlot.pdf
TRINITY_DN12373_c0_g1:116	si_a397	TRINITY_DN12373_c0_g1	105	125	116	-24.00	-16.38	0.6825	9.5	1-4,125-122;8-20,118-106	5-7,121-119[SIL];21-21,105-105[UP3]	.(((((((((((((...((((&))))...))))))))))))).	UAACAAAGCGGUUCAAGAUUC&GAAUAUAGAAUUGUUUUGUUU	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN12373_c0_g1_116_TPlot.pdf
TRINITY_DN12373_c0_g1:117	si_a396	TRINITY_DN12373_c0_g1	106	126	117	-24.70	-16.48	0.667206477732794	9	2-5,125-122;9-21,118-106	1-1,126-126[UP5];6-8,121-119[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	AACAAAGCGGUUCAAGAUUCA&AGAAUAUAGAAUUGUUUUGUU	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN12373_c0_g1_117_TPlot.pdf
TRINITY_DN12373_c0_g1:1531	si_s806	TRINITY_DN12373_c0_g1	1519	1540	1531	-28.60	-18.70	0.653846153846154	6.5	2-11,1539-1530;13-17,1528-1524;18-19,1522-1521	1-1,1540-1540[UP5];12-12,1529-1529[SIL];x-x,1523-1523[BULt];20-21,1520-1519[UP3]	..((.(((((.((((((((((.&.)))))))))).)))))-))..	CUGACGAAGGAAACGAAGAUAU&UUAUCUUCGUUACCUUU-UCUU	3	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN12373_c0_g1_1531_TPlot.pdf
TRINITY_DN12373_c0_g1:1532	si_s805	TRINITY_DN12373_c0_g1	1520	1541	1532	-28.60	-18.70	0.653846153846154	6.5	3-12,1539-1530;14-18,1528-1524;19-20,1522-1521	1-2,1541-1540[UP5];13-13,1529-1529[SIL];x-x,1523-1523[BULt];21-21,1520-1520[UP3]	.((.(((((.((((((((((..&..)))))))))).)))))-)).	UGACGAAGGAAACGAAGAUAUU&UUUAUCUUCGUUACCUUU-UCU	2	0.999999981818934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN12373_c0_g1_1532_TPlot.pdf
TRINITY_DN12373_c0_g1:1533	si_s804	TRINITY_DN12373_c0_g1	1522	1542	1533	-27.90	-18.40	0.659498207885305	8.5	4-13,1539-1530;15-19,1528-1524	1-3,1542-1540[UP5];14-14,1529-1529[SIL];20-21,1523-1522[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	ACGAAGGAAACGAAGAUAUUG&UUUUAUCUUCGUUACCUUUUC	2	0.999999902426026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN12373_c0_g1_1533_TPlot.pdf
TRINITY_DN12373_c0_g1:1534	si_s803	TRINITY_DN12373_c0_g1	1523	1543	1534	-26.00	-18.40	0.707692307692308	9.5	5-14,1539-1530;16-20,1528-1524	1-4,1543-1540[UP5];15-15,1529-1529[SIL];21-21,1523-1523[UP3]	.(((((.((((((((((....&....)))))))))).))))).	CGAAGGAAACGAAGAUAUUGA&AUUUUAUCUUCGUUACCUUUU	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12373_c0_g1_1534_TPlot.pdf
TRINITY_DN12373_c0_g1:1535	si_s802	TRINITY_DN12373_c0_g1	1524	1544	1535	-26.40	-18.40	0.696969696969697	10.5	6-15,1539-1530;17-21,1528-1524	1-5,1544-1540[UP5];16-16,1529-1529[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GAAGGAAACGAAGAUAUUGAA&UAUUUUAUCUUCGUUACCUUU	3	0.999977200196488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN12373_c0_g1_1535_TPlot.pdf
TRINITY_DN12373_c0_g1:797	si_s798	TRINITY_DN12373_c0_g1	786	806	797	-29.30	-20.30	0.692832764505119	9.5	1-9,806-798;12-19,795-788	10-11,797-796[SIL];20-21,787-786[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	CGGACGAAGGCUAGAUACGGG&CUCGUAUUUUAUCUUCGUUAC	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN12373_c0_g1_797_TPlot.pdf
TRINITY_DN12373_c0_g1:798	si_s797	TRINITY_DN12373_c0_g1	787	807	798	-30.00	-22.40	0.746666666666667	8.5	1-10,807-798;13-20,795-788	11-12,797-796[SIL];21-21,787-787[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	GGACGAAGGCUAGAUACGGGU&GCUCGUAUUUUAUCUUCGUUA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN12373_c0_g1_798_TPlot.pdf
TRINITY_DN12373_c0_g1:799	si_s796	TRINITY_DN12373_c0_g1	788	808	799	-30.30	-22.20	0.732673267326733	8	2-11,807-798;14-21,795-788	1-1,808-808[UP5];12-13,797-796[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	GACGAAGGCUAGAUACGGGUA&AGCUCGUAUUUUAUCUUCGUU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN12373_c0_g1_799_TPlot.pdf
TRINITY_DN12373_c0_g1:800	si_s795	TRINITY_DN12373_c0_g1	789	809	800	-30.30	-20.90	0.68976897689769	8.5	3-12,807-798;15-21,795-789	1-2,809-808[UP5];13-14,797-796[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	ACGAAGGCUAGAUACGGGUAC&AAGCUCGUAUUUUAUCUUCGU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN12373_c0_g1_800_TPlot.pdf
TRINITY_DN12374_c0_g1:630	si_s79	TRINITY_DN12374_c0_g1	619	639	630	-26.20	-20.10	0.767175572519084	5	1-11,639-629;13-21,627-619	12-12,628-628[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GGGAAGAAAUGAAAGAAGGAA&UUUUUUCUUUCCUUUCUUCUU	3	0.999999998922625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12374_c0_g1_630_TPlot.pdf
TRINITY_DN12374_c0_g1:631	si_s78	TRINITY_DN12374_c0_g1	620	640	631	-26.20	-20.50	0.782442748091603	3.5	1-12,640-629;14-21,627-620	13-13,628-628[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAAGAAAUGAAAGAAGGAAA&UUUUUUUCUUUCCUUUCUUCU	3	0.999999774367657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12374_c0_g1_631_TPlot.pdf
TRINITY_DN12374_c0_g1:633	si_s76	TRINITY_DN12374_c0_g1	622	642	633	-23.60	-16.10	0.682203389830509	6	3-14,640-629;16-21,627-622	1-2,642-641[UP5];15-15,628-628[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AAGAAAUGAAAGAAGGAAACG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN12374_c0_g1_633_TPlot.pdf
TRINITY_DN1237_c0_g1:1941	si_s77	TRINITY_DN1237_c0_g1	1930	1950	1941	-25.50	-18.20	0.713725490196078	8.5	2-5,1949-1946;7-14,1944-1937;16-21,1935-1930	1-1,1950-1950[UP5];6-6,1945-1945[SIL];15-15,1936-1936[SIL]	((((((.((((((((.((((.&.)))).)))))))).))))))	GAAGAGCGGAGAGAAUGGGAC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1237_c0_g1_1941_TPlot.pdf
TRINITY_DN12381_c0_g1:542	si_a69	TRINITY_DN12381_c0_g1	531	557	542	-24.00	-15.80	0.658333333333333	18	1-9,557-549;10-19,542-533	x-x,548-543[BULt];20-21,532-531[UP3]	..((((((((((......(((((((((&)))))))))------))))))))))..	GAGAAGAGCAAUUUCAUUUUGGAGGGA&UUCUUUCAA------AUUGUUUUUCAU	4	0.999999999999584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN12381_c0_g1_542_TPlot.pdf
TRINITY_DN12381_c0_g1:615	si_s99	TRINITY_DN12381_c0_g1	603	624	615	-34.60	-22.50	0.65028901734104	7	1-5,624-620;7-13,618-612;14-17,610-607	6-6,619-619[SIL];x-x,611-611[BULt];18-21,606-603[UP3]	....((((.(((((((.(((((&))))).)))))))-))))....	AAUGCCAAUUCCGAAGAGAAGA&UCUUCGCUUCGGA-UUGGAAAA	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN12381_c0_g1_615_TPlot.pdf
TRINITY_DN12381_c0_g1:616	si_s98	TRINITY_DN12381_c0_g1	604	625	616	-34.70	-22.90	0.659942363112392	6.5	1-6,625-620;8-14,618-612;15-18,610-607	7-7,619-619[SIL];x-x,611-611[BULt];19-21,606-604[UP3]	...((((.(((((((.((((((&)))))).)))))))-))))...	AUGCCAAUUCCGAAGAGAAGAG&UUCUUCGCUUCGGA-UUGGAAA	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN12381_c0_g1_616_TPlot.pdf
TRINITY_DN12381_c0_g1:622	si_s92	TRINITY_DN12381_c0_g1	611	635	622	-34.90	-24.10	0.69054441260745	10	1-7,635-629;8-12,624-620;14-20,618-612	x-x,628-625[BULt];13-13,619-619[SIL];21-21,611-611[UP3]	.(((((((.(((((....(((((((&)))))))----))))).))))))).	UUCCGAAGAGAAGAGUAAAGAAGAA&UUCUUCU----UCUUCGCUUCGGAU	2	0.999924879086262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN12381_c0_g1_622_TPlot.pdf
TRINITY_DN12381_c0_g1:623	si_s91	TRINITY_DN12381_c0_g1	612	636	623	-34.70	-24.90	0.717579250720461	9	1-8,636-629;9-13,624-620;15-21,618-612	x-x,628-625[BULt];14-14,619-619[SIL]	(((((((.(((((....((((((((&))))))))----))))).)))))))	UCCGAAGAGAAGAGUAAAGAAGAAA&UUUCUUCU----UCUUCGCUUCGGA	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN12381_c0_g1_623_TPlot.pdf
TRINITY_DN12381_c0_g1:813	si_a21	TRINITY_DN12381_c0_g1	801	822	813	-24.30	-16.10	0.662551440329218	7.5	1-7,822-816;9-14,814-809;15-19,807-803	8-8,815-815[SIL];x-x,808-808[BULt];20-21,802-801[UP3]	..(((((.((((((.(((((((&))))))).))))))-)))))..	GAGGAACGUAAAAAAGAAUGGG&CCUAUUUAUUUUUA-GUUCUAA	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN12381_c0_g1_813_TPlot.pdf
TRINITY_DN12381_c0_g1:815	si_s71	TRINITY_DN12381_c0_g1	802	824	815	-25.70	-16.90	0.657587548638132	6	1-14,824-811;15-15,808-808;17-21,806-802	x-x,810-809[BULt];16-16,807-807[SIL]	(((((.(..((((((((((((((&))))))))))))))--).)))))	AGGAACGUAAAAAAGAAUGGGAG&CUUCUAUUUUUUUU--CUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12381_c0_g1_815_TPlot.pdf
TRINITY_DN12381_c0_g2:728	si_s803	TRINITY_DN12381_c0_g2	717	737	728	-26.00	-17.90	0.688461538461538	9.5	3-7,735-731;10-21,728-717	1-2,737-736[UP5];8-9,730-729[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GGAAGGUGACGACAGUAAAGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999969590209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12381_c0_g2_728_TPlot.pdf
TRINITY_DN12386_c0_g2:47	si_a821	TRINITY_DN12386_c0_g2	36	57	47	-26.20	-17.30	0.66030534351145	10	3-8,55-50;9-16,48-41	1-2,57-56[UP5];x-x,49-49[BULt];17-21,40-36[UP3]	.....((((((((.((((((..&..))))))-)))))))).....	AAAGCUCUUUCCUCUUCUUCCU&AAGAAGAA-AGGAAAGAAAAAA	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN12386_c0_g2_47_TPlot.pdf
TRINITY_DN12386_c0_g2:48	si_a820	TRINITY_DN12386_c0_g2	37	55	48	-28.20	-19.10	0.677304964539007	8	1-8,55-48;11-17,47-41	9-10,x-x[BULq];18-21,40-37[UP3]	....(((((((--((((((((&))))))))..)))))))....	AAGCUCUUUCC--UCUUCUUC&GAAGAAGAAAGGAAAGAAAAA	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN12386_c0_g2_48_TPlot.pdf
TRINITY_DN12386_c0_g2:50	si_a819	TRINITY_DN12386_c0_g2	38	60	50	-28.90	-20.00	0.69204152249135	7	1-5,60-56;6-10,54-50;11-18,48-41	x-x,55-55[BULt];x-x,49-49[BULt];19-21,40-38[UP3]	...((((((((.(((((.(((((&)))))-)))))-))))))))...	AGCUCUUUCCUCUUCUUCCUUCU&AGAAG-AAGAA-AGGAAAGAAAA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN12386_c0_g2_50_TPlot.pdf
TRINITY_DN12386_c0_g2:51	si_a818	TRINITY_DN12386_c0_g2	39	61	51	-28.90	-20.90	0.72318339100346	6	1-6,61-56;7-11,54-50;12-19,48-41	x-x,55-55[BULt];x-x,49-49[BULt];20-21,40-39[UP3]	..((((((((.(((((.((((((&))))))-)))))-))))))))..	GCUCUUUCCUCUUCUUCCUUCUU&AAGAAG-AAGAA-AGGAAAGAAA	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN12386_c0_g2_51_TPlot.pdf
TRINITY_DN1238_c0_g1:3336	si_a417	TRINITY_DN1238_c0_g1	3325	3345	3336	-21.40	-14.90	0.696261682242991	8.5	4-20,3342-3326	1-3,3345-3343[UP5];21-21,3325-3325[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GCUUAUAUUUGUUUAAGUUAC&UAUAUUUAAAUAAAUAUAGGA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN1238_c0_g1_3336_TPlot.pdf
TRINITY_DN1238_c0_g1:3337	si_a416	TRINITY_DN1238_c0_g1	3326	3346	3337	-20.50	-14.70	0.717073170731707	9.5	5-21,3342-3326	1-4,3346-3343[UP5]	(((((((((((((((((....&....)))))))))))))))))	CUUAUAUUUGUUUAAGUUACU&UUAUAUUUAAAUAAAUAUAGG	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN1238_c0_g1_3337_TPlot.pdf
TRINITY_DN1238_c0_g2:423	si_a642	TRINITY_DN1238_c0_g2	408	432	423	-25.90	-17.00	0.656370656370656	11.5	1-12,432-421;13-20,416-409	x-x,420-417[BULt];21-21,408-408[UP3]	.((((((((....((((((((((((&))))))))))))----)))))))).	AUGAUAUAUUAGAUGCUCAAAGAAA&UUUUUUUGAGUA----AUAUAUCGG	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN1238_c0_g2_423_TPlot.pdf
TRINITY_DN1238_c0_g2:424	si_a641	TRINITY_DN1238_c0_g2	409	433	424	-23.60	-17.00	0.720338983050847	8	2-13,432-421;14-20,416-410	1-1,433-433[UP5];x-x,420-417[BULt];21-21,409-409[UP3]	.(((((((....((((((((((((.&.))))))))))))----))))))).	UGAUAUAUUAGAUGCUCAAAGAAAG&AUUUUUUUGAGUA----AUAUAUCG	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN1238_c0_g2_424_TPlot.pdf
TRINITY_DN1238_c0_g2:476	si_a760	TRINITY_DN1238_c0_g2	465	486	476	-31.10	-20.60	0.662379421221865	8.5	1-6,486-481;7-16,479-470;19-19,467-467	x-x,480-480[BULt];17-18,469-468[SIL];20-21,466-465[UP3]	..(..((((((((((.((((((&))))))-))))))))))..)..	UGCUCUCGAAGGCCCUAAAGGA&UCCUUU-GGGUUUUUGAUUGAU	4	0.999999980084876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1238_c0_g2_476_TPlot.pdf
TRINITY_DN1238_c3_g1:1728	si_a788	TRINITY_DN1238_c3_g1	1718	1737	1728	-24.80	-16.50	0.665322580645161	5	1-12,1737-1726;14-16,1725-1723;18-21,1721-1718	13-13,x-x[BULq];17-17,1722-1722[SIL]	((((.(((-((((((((((((&)))))))))))).))).))))	UUGGUGAA-AGAAGAAUGGAG&UUCUAUUUUUCUAUUUUCCAA	2	0.999999988948847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1238_c3_g1_1728_TPlot.pdf
TRINITY_DN1238_c3_g1:1964	si_s74	TRINITY_DN1238_c3_g1	1953	1973	1964	-25.00	-16.30	0.652	12.5	7-20,1967-1954	1-6,1973-1968[UP5];21-21,1953-1953[UP3]	.((((((((((((((......&......)))))))))))))).	AGAAGGAAAGAAAAAUCUUAU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1238_c3_g1_1964_TPlot.pdf
TRINITY_DN1238_c3_g1:1965	si_s73	TRINITY_DN1238_c3_g1	1954	1974	1965	-24.00	-16.10	0.670833333333333	13.5	8-21,1967-1954	1-7,1974-1968[UP5]	((((((((((((((.......&.......))))))))))))))	GAAGGAAAGAAAAAUCUUAUC&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1238_c3_g1_1965_TPlot.pdf
TRINITY_DN12398_c0_g1:1456	si_a793	TRINITY_DN12398_c0_g1	1442	1465	1456	-28.50	-19.90	0.698245614035088	9	1-14,1465-1452;15-19,1448-1444	x-x,1451-1449[BULt];20-21,1443-1442[UP3]	..(((((...((((((((((((((&))))))))))))))---)))))..	AAGGAUUCAGGGAGGAUAGAAGGA&UUUUUCUAUUUUCC---AAUCCGA	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN12398_c0_g1_1456_TPlot.pdf
TRINITY_DN12398_c0_g1:1457	si_a792	TRINITY_DN12398_c0_g1	1443	1466	1457	-27.60	-19.90	0.721014492753623	9	2-15,1465-1452;16-20,1448-1444	1-1,1466-1466[UP5];x-x,1451-1449[BULt];21-21,1443-1443[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	AGGAUUCAGGGAGGAUAGAAGGAA&AUUUUUCUAUUUUCC---AAUCCG	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN12398_c0_g1_1457_TPlot.pdf
TRINITY_DN12398_c0_g1:1461	si_s75	TRINITY_DN12398_c0_g1	1450	1470	1461	-24.00	-16.70	0.695833333333333	11	5-12,1466-1459;14-21,1457-1450	1-4,1470-1467[UP5];13-13,1458-1458[SIL]	((((((((.((((((((....&....)))))))).))))))))	AGGGAGGAUAGAAGGAAUUCU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12398_c0_g1_1461_TPlot.pdf
TRINITY_DN12398_c0_g1:1670	si_s842	TRINITY_DN12398_c0_g1	1659	1679	1670	-34.60	-23.20	0.670520231213873	11	6-17,1674-1663;19-21,1661-1659	1-5,1679-1675[UP5];18-18,1662-1662[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GGUGGAUUCGCUUCUUGAUUU&UUUGAAAGAAGCGAGUCGACU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s842_TRINITY_DN12398_c0_g1_1670_TPlot.pdf
TRINITY_DN12398_c0_g1:1671	si_s841	TRINITY_DN12398_c0_g1	1660	1680	1671	-34.00	-22.10	0.65	12.5	7-18,1674-1663;20-21,1661-1660	1-6,1680-1675[UP5];19-19,1662-1662[SIL]	((.((((((((((((......&......)))))))))))).))	GUGGAUUCGCUUCUUGAUUUA&AUUUGAAAGAAGCGAGUCGAC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s841_TRINITY_DN12398_c0_g1_1671_TPlot.pdf
TRINITY_DN12398_c0_g1:1762	si_a118	TRINITY_DN12398_c0_g1	1750	1772	1762	-30.70	-20.10	0.654723127035831	10	2-6,1771-1767;7-12,1765-1760;13-18,1758-1753	1-1,1772-1772[UP5];x-x,1766-1766[BULt];x-x,1759-1759[BULt];19-21,1752-1750[UP3]	...((((((.((((((.(((((.&.)))))-))))))-))))))...	CAGGCUGUGAAAACGAUGCUCGA&ACGAGC-UUGUUU-UAUAGCAAU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN12398_c0_g1_1762_TPlot.pdf
TRINITY_DN12398_c0_g1:352	si_s82	TRINITY_DN12398_c0_g1	341	361	352	-28.90	-19.20	0.664359861591695	9.5	2-8,360-354;11-20,351-342	1-1,361-361[UP5];9-10,353-352[SIL];21-21,341-341[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	CAGGAGAAGGAUUGGAGGAAC&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN12398_c0_g1_352_TPlot.pdf
TRINITY_DN1239_c0_g1:2224	si_s698	TRINITY_DN1239_c0_g1	2212	2233	2224	-27.00	-17.80	0.659259259259259	8.5	3-14,2231-2220;15-18,2218-2215	1-2,2233-2232[UP5];x-x,2219-2219[BULt];19-21,2214-2212[UP3]	...((((.((((((((((((..&..))))))))))))-))))...	GCAACUGUAUAGAUCGACUAUG&AUUAGUCGAUUUAU-UAGUGAA	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN1239_c0_g1_2224_TPlot.pdf
TRINITY_DN1239_c0_g1:2225	si_s697	TRINITY_DN1239_c0_g1	2213	2234	2225	-26.90	-17.80	0.661710037174721	9.5	4-15,2231-2220;16-19,2218-2215	1-3,2234-2232[UP5];x-x,2219-2219[BULt];20-21,2214-2213[UP3]	..((((.((((((((((((...&...))))))))))))-))))..	CAACUGUAUAGAUCGACUAUGU&AAUUAGUCGAUUUAU-UAGUGA	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN1239_c0_g1_2225_TPlot.pdf
TRINITY_DN1239_c0_g1:2226	si_s696	TRINITY_DN1239_c0_g1	2214	2235	2226	-26.30	-17.80	0.67680608365019	10	5-16,2231-2220;17-20,2218-2215	1-4,2235-2232[UP5];x-x,2219-2219[BULt];21-21,2214-2214[UP3]	.((((.((((((((((((....&....))))))))))))-)))).	AACUGUAUAGAUCGACUAUGUU&UAAUUAGUCGAUUUAU-UAGUG	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN1239_c0_g1_2226_TPlot.pdf
TRINITY_DN1239_c0_g1:2227	si_s695	TRINITY_DN1239_c0_g1	2215	2237	2227	-24.70	-18.80	0.761133603238866	6	1-5,2237-2233;6-17,2231-2220;18-21,2218-2215	x-x,2232-2232[BULt];x-x,2219-2219[BULt]	((((.((((((((((((.(((((&)))))-))))))))))))-))))	ACUGUAUAGAUCGACUAUGUUGA&UUAAU-UAGUCGAUUUAU-UAGU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN1239_c0_g1_2227_TPlot.pdf
TRINITY_DN1239_c0_g1:2228	si_s694	TRINITY_DN1239_c0_g1	2216	2238	2228	-23.90	-17.90	0.748953974895398	6.5	1-6,2238-2233;7-18,2231-2220;19-21,2218-2216	x-x,2232-2232[BULt];x-x,2219-2219[BULt]	(((.((((((((((((.((((((&))))))-))))))))))))-)))	CUGUAUAGAUCGACUAUGUUGAG&UUUAAU-UAGUCGAUUUAU-UAG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN1239_c0_g1_2228_TPlot.pdf
TRINITY_DN1239_c0_g1:2229	si_s693	TRINITY_DN1239_c0_g1	2218	2239	2229	-23.90	-16.20	0.677824267782427	8.5	2-7,2238-2233;8-19,2231-2220	1-1,2239-2239[UP5];x-x,2232-2232[BULt];20-21,2219-2218[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	GUAUAGAUCGACUAUGUUGAGU&GUUUAAU-UAGUCGAUUUAUUA	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN1239_c0_g1_2229_TPlot.pdf
TRINITY_DN1239_c0_g1:2230	si_s692	TRINITY_DN1239_c0_g1	2219	2240	2230	-24.20	-16.20	0.669421487603306	9.5	3-8,2238-2233;9-20,2231-2220	1-2,2240-2239[UP5];x-x,2232-2232[BULt];21-21,2219-2219[UP3]	.((((((((((((.((((((..&..))))))-)))))))))))).	UAUAGAUCGACUAUGUUGAGUU&AGUUUAAU-UAGUCGAUUUAUU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN1239_c0_g1_2230_TPlot.pdf
TRINITY_DN1239_c0_g1:2231	si_s691	TRINITY_DN1239_c0_g1	2220	2241	2231	-26.20	-19.20	0.732824427480916	6.5	1-9,2241-2233;10-21,2231-2220	x-x,2232-2232[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	AUAGAUCGACUAUGUUGAGUUC&GAGUUUAAU-UAGUCGAUUUAU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN1239_c0_g1_2231_TPlot.pdf
TRINITY_DN1239_c0_g1:2234	si_s689	TRINITY_DN1239_c0_g1	2222	2243	2234	-26.50	-18.60	0.70188679245283	6.5	1-11,2243-2233;12-21,2231-2222	x-x,2232-2232[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	AGAUCGACUAUGUUGAGUUCAU&AUGAGUUUAAU-UAGUCGAUUU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN1239_c0_g1_2234_TPlot.pdf
TRINITY_DN1239_c0_g1:2360	si_a892	TRINITY_DN1239_c0_g1	2347	2369	2360	-21.30	-13.90	0.652582159624413	6	1-15,2369-2355;16-19,2352-2349	x-x,2354-2353[BULt];20-21,2348-2347[UP3]	..((((..(((((((((((((((&)))))))))))))))--))))..	UGUACUUUUAUUGUUAUUAUAUU&AAUAUAGUAAUAAUA--AGUAAU	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN1239_c0_g1_2360_TPlot.pdf
TRINITY_DN1239_c0_g1:2361	si_a891	TRINITY_DN1239_c0_g1	2348	2370	2361	-22.90	-16.80	0.733624454148472	5	1-16,2370-2355;17-20,2352-2349	x-x,2354-2353[BULt];21-21,2348-2348[UP3]	.((((..((((((((((((((((&))))))))))))))))--)))).	GUACUUUUAUUGUUAUUAUAUUG&CAAUAUAGUAAUAAUA--AGUAA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN1239_c0_g1_2361_TPlot.pdf
TRINITY_DN1239_c0_g1:2362	si_a890	TRINITY_DN1239_c0_g1	2349	2371	2362	-23.80	-18.00	0.756302521008403	3.5	1-17,2371-2355;18-21,2352-2349	x-x,2354-2353[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	UACUUUUAUUGUUAUUAUAUUGA&UCAAUAUAGUAAUAAUA--AGUA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN1239_c0_g1_2362_TPlot.pdf
TRINITY_DN1239_c0_g1:2363	si_a889	TRINITY_DN1239_c0_g1	2352	2372	2363	-23.60	-18.70	0.792372881355932	3	1-20,2372-2353	21-21,2352-2352[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UUUUAUUGUUAUUAUAUUGAU&AUCAAUAUAGUAAUAAUAAGU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN1239_c0_g1_2363_TPlot.pdf
TRINITY_DN1239_c0_g1:2364	si_a888	TRINITY_DN1239_c0_g1	2353	2373	2364	-22.80	-19.90	0.87280701754386	2	1-21,2373-2353	NA	(((((((((((((((((((((&)))))))))))))))))))))	UUUAUUGUUAUUAUAUUGAUU&AAUCAAUAUAGUAAUAAUAAG	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN1239_c0_g1_2364_TPlot.pdf
TRINITY_DN1239_c0_g1:2365	si_a887	TRINITY_DN1239_c0_g1	2354	2374	2365	-22.90	-19.40	0.847161572052402	2.5	2-21,2373-2354	1-1,2374-2374[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	UUAUUGUUAUUAUAUUGAUUA&CAAUCAAUAUAGUAAUAAUAA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN1239_c0_g1_2365_TPlot.pdf
TRINITY_DN1239_c0_g1:2366	si_a886	TRINITY_DN1239_c0_g1	2355	2375	2366	-25.30	-18.50	0.731225296442688	4	3-21,2373-2355	1-2,2375-2374[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UAUUGUUAUUAUAUUGAUUAA&GCAAUCAAUAUAGUAAUAAUA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a886_TRINITY_DN1239_c0_g1_2366_TPlot.pdf
TRINITY_DN1239_c0_g1:2367	si_a885	TRINITY_DN1239_c0_g1	2356	2376	2367	-25.60	-17.00	0.6640625	6	4-21,2373-2356	1-3,2376-2374[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUUGUUAUUAUAUUGAUUAAA&UGCAAUCAAUAUAGUAAUAAU	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN1239_c0_g1_2367_TPlot.pdf
TRINITY_DN12402_c0_g2:1019	si_a636	TRINITY_DN12402_c0_g2	1008	1028	1019	-26.30	-17.20	0.653992395437262	7.5	1-17,1028-1012	18-21,1011-1008[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAUAACUUAGAAAAAUUGAUA&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999975193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN12402_c0_g2_1019_TPlot.pdf
TRINITY_DN1240_c0_g1:1274	si_a337	TRINITY_DN1240_c0_g1	1263	1283	1274	-30.80	-20.80	0.675324675324675	13	3-13,1281-1271	1-2,1283-1282[UP5];14-21,1270-1263[UP3]	........(((((((((((..&..)))))))))))........	AUCUGCGGCGGGACGGGGAUC&AUUCCUUGUCCCGAAAAUAUU	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN1240_c0_g1_1274_TPlot.pdf
TRINITY_DN1240_c0_g1:438	si_a145	TRINITY_DN1240_c0_g1	426	447	438	-28.10	-19.30	0.686832740213523	11.5	4-16,444-432;19-21,428-426	1-3,447-445[UP5];17-18,431-429[AILt]	(((...(((((((((((((...&...)))))))))))))-..)))	GCCGACAAGGCGACAGCGAGCU&UAAUCGUUGUUGUUUU-AAGGU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN1240_c0_g1_438_TPlot.pdf
TRINITY_DN1240_c0_g1:441	si_a142	TRINITY_DN1240_c0_g1	430	450	441	-23.50	-15.90	0.676595744680851	15.5	7-19,444-432	1-6,450-445[UP5];20-21,431-430[UP3]	..(((((((((((((......&......)))))))))))))..	ACAAGGCGACAGCGAGCUGCA&AAUUAAUCGUUGUUGUUUUAA	2	0.999999360952188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1240_c0_g1_441_TPlot.pdf
TRINITY_DN1240_c0_g1:442	si_a141	TRINITY_DN1240_c0_g1	431	451	442	-23.80	-15.90	0.668067226890756	16.5	8-20,444-432	1-7,451-445[UP5];21-21,431-431[UP3]	.(((((((((((((.......&.......))))))))))))).	CAAGGCGACAGCGAGCUGCAA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999681699807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1240_c0_g1_442_TPlot.pdf
TRINITY_DN12415_c0_g1:306	si_a406	TRINITY_DN12415_c0_g1	295	315	306	-19.80	-14.10	0.712121212121212	6	1-15,315-301;17-19,299-297	16-16,300-300[SIL];20-21,296-295[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	GAUAGUUGUAAAUAAAGCAAU&AUUGUUUUGUUUAUAUUUAAA	4	0.999999997766903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN12415_c0_g1_306_TPlot.pdf
TRINITY_DN12415_c0_g1:307	si_a405	TRINITY_DN12415_c0_g1	296	316	307	-19.80	-14.30	0.722222222222222	6	2-16,315-301;18-20,299-297	1-1,316-316[UP5];17-17,300-300[SIL];21-21,296-296[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AUAGUUGUAAAUAAAGCAAUA&AAUUGUUUUGUUUAUAUUUAA	3	0.999999991154675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN12415_c0_g1_307_TPlot.pdf
TRINITY_DN1241_c0_g1:1012	si_s897	TRINITY_DN1241_c0_g1	1003	1021	1012	-31.30	-21.40	0.68370607028754	7.5	2-10,1020-1012;13-19,1011-1005	1-1,1021-1021[UP5];11-12,x-x[BULq];20-21,1004-1003[UP3]	..(((((((--(((((((((.&.)))))))))..)))))))..	CCGGAAUUG--GAGAAAGCCA&AGGCUUUCUCUUCAAUUUCAA	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN1241_c0_g1_1012_TPlot.pdf
TRINITY_DN1241_c0_g1:1013	si_s896	TRINITY_DN1241_c0_g1	1004	1022	1013	-31.60	-21.40	0.677215189873418	7.5	3-11,1020-1012;14-20,1011-1005	1-2,1022-1021[UP5];12-13,x-x[BULq];21-21,1004-1004[UP3]	.(((((((--(((((((((..&..)))))))))..))))))).	CGGAAUUG--GAGAAAGCCAU&UAGGCUUUCUCUUCAAUUUCA	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN1241_c0_g1_1013_TPlot.pdf
TRINITY_DN1241_c0_g1:1014	si_s895	TRINITY_DN1241_c0_g1	1005	1023	1014	-31.10	-21.00	0.67524115755627	7.5	4-12,1020-1012;15-21,1011-1005	1-3,1023-1021[UP5];13-14,x-x[BULq]	(((((((--(((((((((...&...)))))))))..)))))))	GGAAUUG--GAGAAAGCCAUU&AUAGGCUUUCUCUUCAAUUUC	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN1241_c0_g1_1014_TPlot.pdf
TRINITY_DN1241_c0_g1:1686	si_a471	TRINITY_DN1241_c0_g1	1675	1695	1686	-21.10	-13.90	0.658767772511848	9	2-8,1694-1688;10-19,1686-1677	1-1,1695-1695[UP5];9-9,1687-1687[SIL];20-21,1676-1675[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UAAUGAUAAUGAGUGCAUGUC&AAUAUGUAAUUAUUGUUAUAU	2	0.999981593862286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN1241_c0_g1_1686_TPlot.pdf
TRINITY_DN1241_c0_g1:1687	si_a470	TRINITY_DN1241_c0_g1	1676	1696	1687	-21.30	-13.90	0.652582159624413	10	3-9,1694-1688;11-20,1686-1677	1-2,1696-1695[UP5];10-10,1687-1687[SIL];21-21,1676-1676[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	AAUGAUAAUGAGUGCAUGUCU&UAAUAUGUAAUUAUUGUUAUA	3	0.999999811949203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN1241_c0_g1_1687_TPlot.pdf
TRINITY_DN12422_c0_g1:1157	si_s72	TRINITY_DN12422_c0_g1	1146	1166	1157	-24.10	-15.80	0.655601659751037	9	1-9,1166-1158;11-15,1156-1152;17-19,1150-1148	10-10,1157-1157[SIL];16-16,1151-1151[SIL];20-21,1147-1146[UP3]	..(((.(((((.(((((((((&))))))))).))))).)))..	UUGGGUGGAGACGAAGUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN12422_c0_g1_1157_TPlot.pdf
TRINITY_DN12422_c0_g1:1462	si_a142	TRINITY_DN12422_c0_g1	1451	1471	1462	-23.50	-16.20	0.68936170212766	13.5	4-17,1468-1455	1-3,1471-1469[UP5];18-21,1454-1451[UP3]	....((((((((((((((...&...))))))))))))))....	GGACAGCGGCGGCGAUUGGAC&AAUUAAUCGUUGUUGUUUUAA	4	0.999999987865376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN12422_c0_g1_1462_TPlot.pdf
TRINITY_DN12422_c0_g1:1467	si_a137	TRINITY_DN12422_c0_g1	1456	1487	1467	-26.50	-17.90	0.675471698113208	26.5	1-8,1487-1480;9-21,1468-1456	x-x,1479-1469[BULt]	(((((((((((((...........((((((((&))))))))-----------)))))))))))))	GCGGCGGCGAUUGGACAAAUUUCUAUUACUGU&AUAGUAAU-----------UAAUCGUUGUUGU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN12422_c0_g1_1467_TPlot.pdf
TRINITY_DN12422_c0_g1:1794	si_s484	TRINITY_DN12422_c0_g1	1783	1803	1794	-20.50	-13.40	0.653658536585366	10	1-13,1803-1791	14-21,1790-1783[UP3]	........(((((((((((((&)))))))))))))........	CGUAACUAAAGUAAAUAUGGG&CCUAUAUUUAUUUAAAUAUAA	4	0.999983337958052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN12422_c0_g1_1794_TPlot.pdf
TRINITY_DN12422_c0_g1:1795	si_s483	TRINITY_DN12422_c0_g1	1784	1804	1795	-21.40	-15.00	0.700934579439252	9	1-14,1804-1791	15-21,1790-1784[UP3]	.......((((((((((((((&)))))))))))))).......	GUAACUAAAGUAAAUAUGGGA&UCCUAUAUUUAUUUAAAUAUA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN12422_c0_g1_1795_TPlot.pdf
TRINITY_DN12422_c0_g1:1796	si_s482	TRINITY_DN12422_c0_g1	1785	1805	1796	-21.20	-15.00	0.707547169811321	8.5	2-15,1804-1791	1-1,1805-1805[UP5];16-21,1790-1785[UP3]	......((((((((((((((.&.))))))))))))))......	UAACUAAAGUAAAUAUGGGAA&AUCCUAUAUUUAUUUAAAUAU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN12422_c0_g1_1796_TPlot.pdf
TRINITY_DN12422_c0_g1:1797	si_s481	TRINITY_DN12422_c0_g1	1786	1806	1797	-23.00	-15.00	0.652173913043478	9.5	3-16,1804-1791	1-2,1806-1805[UP5];17-21,1790-1786[UP3]	.....((((((((((((((..&..)))))))))))))).....	AACUAAAGUAAAUAUGGGAAU&GAUCCUAUAUUUAUUUAAAUA	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN12422_c0_g1_1797_TPlot.pdf
TRINITY_DN12422_c0_g1:941	si_a328	TRINITY_DN12422_c0_g1	930	950	941	-30.10	-22.60	0.750830564784053	6.5	1-18,950-933	19-21,932-930[UP3]	...((((((((((((((((((&))))))))))))))))))...	UAUGCAAGGAAUAGAGGAAUC&GAUUUUUUUAUUCCUUGUCCC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN12422_c0_g1_941_TPlot.pdf
TRINITY_DN12425_c0_g1:1491	si_s67	TRINITY_DN12425_c0_g1	1480	1500	1491	-25.60	-18.88	0.7375	7.5	1-3,1500-1498;7-21,1494-1480	4-6,1497-1495[SIL]	(((((((((((((((...(((&)))...)))))))))))))))	AAGAAAAGAAAUGGAUCGUGC&GCAACUUCUAUUUUUUUUCUU	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN12425_c0_g1_1491_TPlot.pdf
TRINITY_DN12425_c0_g1:2629	si_a703	TRINITY_DN12425_c0_g1	2618	2638	2629	-29.20	-20.60	0.705479452054795	10	3-5,2636-2634;7-17,2632-2622	1-2,2638-2637[UP5];6-6,2633-2633[SIL];18-21,2621-2618[UP3]	....(((((((((((.(((..&..))).)))))))))))....	UCUGUUUGGAGUGUAGCAGGA&AACUGGUACAUUCCAAAAUAA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN12425_c0_g1_2629_TPlot.pdf
TRINITY_DN12425_c0_g1:2630	si_a702	TRINITY_DN12425_c0_g1	2619	2639	2630	-30.80	-20.60	0.668831168831169	11	4-6,2636-2634;8-18,2632-2622	1-3,2639-2637[UP5];7-7,2633-2633[SIL];19-21,2621-2619[UP3]	...(((((((((((.(((...&...))).)))))))))))...	CUGUUUGGAGUGUAGCAGGAA&CAACUGGUACAUUCCAAAAUA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN12425_c0_g1_2630_TPlot.pdf
TRINITY_DN12426_c0_g1:2770	si_a794	TRINITY_DN12426_c0_g1	2759	2779	2770	-28.60	-19.10	0.667832167832168	8	2-13,2778-2767;16-18,2764-2762	1-1,2779-2779[UP5];14-15,2766-2765[SIL];19-21,2761-2759[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	UGGGGACAGGAAGAUAGAGAU&UUUUCUAUUUUCCAAUCCGAA	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN12426_c0_g1_2770_TPlot.pdf
TRINITY_DN12426_c0_g1:2771	si_a793	TRINITY_DN12426_c0_g1	2760	2780	2771	-28.50	-19.10	0.670175438596491	9	3-14,2778-2767;17-19,2764-2762	1-2,2780-2779[UP5];15-16,2766-2765[SIL];20-21,2761-2760[UP3]	..(((..((((((((((((..&..))))))))))))..)))..	GGGGACAGGAAGAUAGAGAUA&UUUUUCUAUUUUCCAAUCCGA	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN12426_c0_g1_2771_TPlot.pdf
TRINITY_DN12426_c0_g1:2772	si_a792	TRINITY_DN12426_c0_g1	2761	2781	2772	-27.60	-19.10	0.692028985507246	10	4-15,2778-2767;18-20,2764-2762	1-3,2781-2779[UP5];16-17,2766-2765[SIL];21-21,2761-2761[UP3]	.(((..((((((((((((...&...))))))))))))..))).	GGGACAGGAAGAUAGAGAUAG&AUUUUUCUAUUUUCCAAUCCG	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN12426_c0_g1_2772_TPlot.pdf
TRINITY_DN12440_c0_g1:2302	si_s182	TRINITY_DN12440_c0_g1	2291	2311	2302	-32.60	-23.00	0.705521472392638	6	2-13,2310-2299;15-16,2297-2296;18-21,2294-2291	1-1,2311-2311[UP5];14-14,2298-2298[SIL];17-17,2295-2295[SIL]	((((.((.((((((((((((.&.)))))))))))).)).))))	GGGUUGUGGUUACUUGGGCAG&AUGCCCGAGUAACGAUUAUUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN12440_c0_g1_2302_TPlot.pdf
TRINITY_DN12440_c0_g1:2303	si_s181	TRINITY_DN12440_c0_g1	2292	2312	2303	-34.60	-22.70	0.65606936416185	7.5	3-14,2310-2299;16-17,2297-2296;19-21,2294-2292	1-2,2312-2311[UP5];15-15,2298-2298[SIL];18-18,2295-2295[SIL]	(((.((.((((((((((((..&..)))))))))))).)).)))	GGUUGUGGUUACUUGGGCAGG&GAUGCCCGAGUAACGAUUAUU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN12440_c0_g1_2303_TPlot.pdf
TRINITY_DN12442_c0_g2:225	si_a778	TRINITY_DN12442_c0_g2	213	234	225	-28.30	-19.30	0.681978798586572	9	1-5,234-230;8-15,227-220;16-21,218-213	6-7,229-228[SIL];x-x,219-219[BULt]	((((((.((((((((..(((((&)))))..))))))))-))))))	GAAGAGUUGGAGGAGGAGAGUU&GAUUCAACUCUUCUA-UUUUUC	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN12442_c0_g2_225_TPlot.pdf
TRINITY_DN12442_c0_g2:67	si_a766	TRINITY_DN12442_c0_g2	55	76	67	-30.50	-19.90	0.652459016393443	7.5	1-14,76-63;15-17,61-59	x-x,62-62[BULt];18-21,58-55[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	AACGGAAUUUAAUCGAAGACCC&GGGUUUUUGAUUGA-UUCAACU	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN12442_c0_g2_67_TPlot.pdf
TRINITY_DN12442_c0_g2:71	si_a762	TRINITY_DN12442_c0_g2	59	80	71	-29.70	-19.70	0.663299663299663	10.5	5-18,76-63;19-21,61-59	1-4,80-77[UP5];x-x,62-62[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	GAAUUUAAUCGAAGACCCUUAU&CUUUGGGUUUUUGAUUGA-UUC	4	0.999999989922738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN12442_c0_g2_71_TPlot.pdf
TRINITY_DN12446_c0_g1:3607	si_a283	TRINITY_DN12446_c0_g1	3596	3616	3607	-28.30	-19.10	0.674911660777385	10.5	4-15,3613-3602;17-19,3600-3598	1-3,3616-3614[UP5];16-16,3601-3601[SIL];20-21,3597-3596[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	UCUGACUCCGAGCGAUUUGGC&AAAAGAUCGCUUGGAUUUAAA	2	0.992673290620823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN12446_c0_g1_3607_TPlot.pdf
TRINITY_DN12447_c0_g1:236	si_a319	TRINITY_DN12447_c0_g1	225	245	236	-22.40	-15.10	0.674107142857143	6	1-3,245-243;5-14,241-232;17-20,229-226	4-4,242-242[SIL];15-16,231-230[SIL];21-21,225-225[UP3]	.((((..((((((((((.(((&))).))))))))))..)))).	UAUAAUUAAAUCAUGGAAGAA&UUUAUCCAUGAUUUUUUUAUU	2	0.999999948279345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN12447_c0_g1_236_TPlot.pdf
TRINITY_DN12447_c0_g1:237	si_a318	TRINITY_DN12447_c0_g1	226	246	237	-22.50	-15.10	0.671111111111111	6	2-4,245-243;6-15,241-232;18-21,229-226	1-1,246-246[UP5];5-5,242-242[SIL];16-17,231-230[SIL]	((((..((((((((((.(((.&.))).))))))))))..))))	AUAAUUAAAUCAUGGAAGAAC&AUUUAUCCAUGAUUUUUUUAU	2	0.999999839473867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN12447_c0_g1_237_TPlot.pdf
TRINITY_DN12447_c0_g1:290	si_s776	TRINITY_DN12447_c0_g1	279	299	290	-25.10	-17.70	0.705179282868526	8	1-13,299-287;16-19,284-281	14-15,286-285[SIL];20-21,280-279[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	GGGUUUAUUGGCGGUGGUAAU&AUUACUAUUGCUAUAAAACAA	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN12447_c0_g1_290_TPlot.pdf
TRINITY_DN12447_c0_g1:291	si_s775	TRINITY_DN12447_c0_g1	280	300	291	-25.00	-17.90	0.716	7.5	2-14,299-287;17-20,284-281	1-1,300-300[UP5];15-16,286-285[SIL];21-21,280-280[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	GGUUUAUUGGCGGUGGUAAUA&AAUUACUAUUGCUAUAAAACA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN12447_c0_g1_291_TPlot.pdf
TRINITY_DN12447_c0_g1:292	si_s774	TRINITY_DN12447_c0_g1	281	301	292	-24.70	-17.50	0.708502024291498	8.5	3-15,299-287;18-21,284-281	1-2,301-300[UP5];16-17,286-285[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GUUUAUUGGCGGUGGUAAUAU&UAAUUACUAUUGCUAUAAAAC	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN12447_c0_g1_292_TPlot.pdf
TRINITY_DN12447_c0_g1:293	si_s773	TRINITY_DN12447_c0_g1	281	302	293	-23.10	-15.50	0.670995670995671	10.5	4-16,299-287;17-20,285-282	1-3,302-300[UP5];x-x,286-286[BULt];21-21,281-281[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	GUUUAUUGGCGGUGGUAAUAUG&UUAAUUACUAUUGCUA-UAAAA	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN12447_c0_g1_293_TPlot.pdf
TRINITY_DN12447_c0_g1:294	si_s772	TRINITY_DN12447_c0_g1	282	303	294	-23.20	-15.30	0.65948275862069	11	5-17,299-287;18-21,285-282	1-4,303-300[UP5];x-x,286-286[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	UUUAUUGGCGGUGGUAAUAUGG&AUUAAUUACUAUUGCUA-UAAA	3	0.999999069262624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN12447_c0_g1_294_TPlot.pdf
TRINITY_DN12447_c0_g1:433	si_a789	TRINITY_DN12447_c0_g1	422	445	433	-24.80	-16.12	0.65	16	1-6,445-440;9-18,434-425	7-8,439-435[AILt];19-21,424-422[UP3]	...((((((((((.....((((((&))))))---..))))))))))...	CCAGGAAAAUGGAUCCCUAGUGGA&UCUAUU---UUUCUAUUUUCCAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN12447_c0_g1_433_TPlot.pdf
TRINITY_DN12447_c0_g1:435	si_a787	TRINITY_DN12447_c0_g1	424	447	435	-26.30	-17.22	0.654752851711027	14.5	2-8,446-440;11-20,434-425	1-1,447-447[UP5];9-10,439-435[AILt];21-21,424-424[UP3]	.((((((((((.....(((((((.&.)))))))---..)))))))))).	AGGAAAAUGGAUCCCUAGUGGAAA&CUUCUAUU---UUUCUAUUUUCCA	2	0.999999999951393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN12447_c0_g1_435_TPlot.pdf
TRINITY_DN1244_c0_g2:1777	si_a480	TRINITY_DN1244_c0_g2	1765	1786	1777	-23.70	-15.90	0.670886075949367	5	1-14,1786-1773;15-18,1771-1768	x-x,1772-1772[BULt];19-21,1767-1765[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	UUUUAUUCCUAUAUAACAAUGA&UUAUUGUUAUAUAG-AAUAUGU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN1244_c0_g2_1777_TPlot.pdf
TRINITY_DN1244_c0_g2:1803	si_a317	TRINITY_DN1244_c0_g2	1792	1811	1803	-24.30	-16.10	0.662551440329218	9	1-6,1811-1806;8-11,1805-1802;13-20,1800-1793	7-7,x-x[BULq];12-12,1801-1801[SIL];21-21,1792-1792[UP3]	.((((((((.((((-((((((&)))))).)))).)))))))).	AAAAAGAGUGGUGG-UAGGUC&GAUUUAUCCAUGAUUUUUUUA	3	0.999999997320845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1244_c0_g2_1803_TPlot.pdf
TRINITY_DN12456_c0_g1:1104	si_s68	TRINITY_DN12456_c0_g1	1093	1115	1104	-23.10	-15.20	0.658008658008658	9	1-5,1115-1111;6-12,1108-1102;15-20,1099-1094	x-x,1110-1109[BULt];13-14,1101-1100[SIL];21-21,1093-1093[UP3]	.((((((..(((((((..(((((&)))))--)))))))..)))))).	CAAGGGAUUAGAUAGAUUAGUUG&CAACU--UCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12456_c0_g1_1104_TPlot.pdf
TRINITY_DN12456_c0_g1:325	si_a756	TRINITY_DN12456_c0_g1	315	334	325	-33.10	-22.50	0.6797583081571	5.5	3-12,332-323;14-21,322-315	1-2,334-333[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AUCAAAGA-UCAAAGGAGGCG&AACCUCCUUUGGGUUUUUGAU	2	0.999361043358898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN12456_c0_g1_325_TPlot.pdf
TRINITY_DN12456_c0_g1:4065	si_s16	TRINITY_DN12456_c0_g1	4054	4074	4065	-25.60	-18.60	0.7265625	12	6-19,4069-4056	1-5,4074-4070[UP5];20-21,4055-4054[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAGCGGUCAAUAUAGUCGGUC&UUAUUACUAUAUUGAUUGCAA	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN12456_c0_g1_4065_TPlot.pdf
TRINITY_DN12456_c0_g1:4067	si_s14	TRINITY_DN12456_c0_g1	4056	4076	4067	-25.30	-18.10	0.715415019762846	14	8-21,4069-4056	1-7,4076-4070[UP5]	((((((((((((((.......&.......))))))))))))))	GCGGUCAAUAUAGUCGGUCAA&UAUUAUUACUAUAUUGAUUGC	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN12456_c0_g1_4067_TPlot.pdf
TRINITY_DN12458_c0_g1:683	si_a808	TRINITY_DN12458_c0_g1	671	692	683	-34.90	-23.70	0.679083094555874	6	1-14,692-679;15-19,677-673	x-x,678-678[BULt];20-21,672-671[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AGCUUCUGUCUUUGUUUUGGAU&AUCCGAAGCGAAGA-AGAAGAA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN12458_c0_g1_683_TPlot.pdf
TRINITY_DN1245_c0_g1:1310	si_a118	TRINITY_DN1245_c0_g1	1299	1319	1310	-30.70	-21.50	0.700325732899023	10	3-11,1317-1309;14-19,1306-1301	1-2,1319-1318[UP5];12-13,1308-1307[SIL];20-21,1300-1299[UP3]	..((((((..(((((((((..&..)))))))))..))))))..	UCUGCUAUCCGACGAGCUCUG&ACGAGCUUGUUUUAUAGCAAU	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN1245_c0_g1_1310_TPlot.pdf
TRINITY_DN1245_c0_g1:1311	si_a117	TRINITY_DN1245_c0_g1	1300	1320	1311	-31.00	-21.50	0.693548387096774	10	4-12,1317-1309;15-20,1306-1301	1-3,1320-1318[UP5];13-14,1308-1307[SIL];21-21,1300-1300[UP3]	.((((((..(((((((((...&...)))))))))..)))))).	CUGCUAUCCGACGAGCUCUGA&UACGAGCUUGUUUUAUAGCAA	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN1245_c0_g1_1311_TPlot.pdf
TRINITY_DN1245_c0_g1:1464	si_a142	TRINITY_DN1245_c0_g1	1453	1473	1464	-23.50	-15.40	0.65531914893617	15.5	7-19,1467-1455	1-6,1473-1468[UP5];20-21,1454-1453[UP3]	..(((((((((((((......&......)))))))))))))..	GAGGAACGACAACGGCCCGGU&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999927612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1245_c0_g1_1464_TPlot.pdf
TRINITY_DN1245_c0_g1:1577	si_a790	TRINITY_DN1245_c0_g1	1567	1586	1577	-25.80	-18.30	0.709302325581395	6	1-14,1586-1573;17-21,1571-1567	15-16,1572-1572[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	GAUUGC-GGAUGGGAAAAUGG&CUAUUUUUCUAUUUUCCAAUC	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN1245_c0_g1_1577_TPlot.pdf
TRINITY_DN1245_c0_g1:1580	si_a795	TRINITY_DN1245_c0_g1	1569	1589	1580	-30.20	-22.30	0.73841059602649	5	1-12,1589-1578;14-18,1576-1572	13-13,1577-1577[SIL];19-21,1571-1569[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UUGCGGAUGGGAAAAUGGAAA&UUUCUAUUUUCCAAUCCGAAG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN1245_c0_g1_1580_TPlot.pdf
TRINITY_DN1245_c0_g1:1581	si_a794	TRINITY_DN1245_c0_g1	1570	1590	1581	-28.60	-23.00	0.804195804195804	4	1-13,1590-1578;15-19,1576-1572	14-14,1577-1577[SIL];20-21,1571-1570[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UGCGGAUGGGAAAAUGGAAAA&UUUUCUAUUUUCCAAUCCGAA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1245_c0_g1_1581_TPlot.pdf
TRINITY_DN1245_c0_g1:1582	si_a793	TRINITY_DN1245_c0_g1	1571	1591	1582	-28.50	-23.20	0.814035087719298	4	2-14,1590-1578;16-20,1576-1572	1-1,1591-1591[UP5];15-15,1577-1577[SIL];21-21,1571-1571[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	GCGGAUGGGAAAAUGGAAAAU&UUUUUCUAUUUUCCAAUCCGA	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN1245_c0_g1_1582_TPlot.pdf
TRINITY_DN1245_c0_g1:1583	si_a792	TRINITY_DN1245_c0_g1	1572	1592	1583	-27.60	-23.00	0.833333333333333	5	3-15,1590-1578;17-21,1576-1572	1-2,1592-1591[UP5];16-16,1577-1577[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	CGGAUGGGAAAAUGGAAAAUU&AUUUUUCUAUUUUCCAAUCCG	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN1245_c0_g1_1583_TPlot.pdf
TRINITY_DN1245_c0_g1:1584	si_a791	TRINITY_DN1245_c0_g1	1573	1593	1584	-26.50	-20.60	0.777358490566038	7	4-16,1590-1578;18-21,1576-1573	1-3,1593-1591[UP5];17-17,1577-1577[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GGAUGGGAAAAUGGAAAAUUC&UAUUUUUCUAUUUUCCAAUCC	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1245_c0_g1_1584_TPlot.pdf
TRINITY_DN1245_c0_g1:2001	si_a362	TRINITY_DN1245_c0_g1	1989	2011	2001	-28.00	-18.90	0.675	9	1-7,2011-2005;9-12,2002-1999;13-21,1997-1989	8-8,2004-2003[AILt];x-x,1998-1998[BULt]	(((((((((.((((..(((((((&)))))))-.))))-)))))))))	UUUUUGAUCUCGAUAUGAAGUGG&CUAUUUU-GAUCG-GAUCAAAAA	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN1245_c0_g1_2001_TPlot.pdf
TRINITY_DN1245_c0_g1:2002	si_a361	TRINITY_DN1245_c0_g1	1990	2012	2002	-29.00	-19.40	0.668965517241379	8	1-8,2012-2005;10-13,2002-1999;14-21,1997-1990	9-9,2004-2003[AILt];x-x,1998-1998[BULt]	((((((((.((((..((((((((&))))))))-.))))-))))))))	UUUUGAUCUCGAUAUGAAGUGGA&UCUAUUUU-GAUCG-GAUCAAAA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN1245_c0_g1_2002_TPlot.pdf
TRINITY_DN1245_c0_g1:2050	si_a788	TRINITY_DN1245_c0_g1	2039	2059	2050	-24.80	-16.30	0.657258064516129	10	1-9,2059-2051;11-14,2049-2046;16-19,2044-2041	10-10,2050-2050[SIL];15-15,2045-2045[SIL];20-21,2040-2039[UP3]	..((((.((((.(((((((((&))))))))).)))).))))..	GCGGAGUGUGGUGGGAUAGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1245_c0_g1_2050_TPlot.pdf
TRINITY_DN1245_c0_g1:2052	si_a786	TRINITY_DN1245_c0_g1	2041	2061	2052	-26.60	-18.40	0.691729323308271	8.5	2-11,2060-2051;13-16,2049-2046;18-21,2044-2041	1-1,2061-2061[UP5];12-12,2050-2050[SIL];17-17,2045-2045[SIL]	((((.((((.((((((((((.&.)))))))))).)))).))))	GGAGUGUGGUGGGAUAGAAGU&UCUUCUAUUUUUCUAUUUUCC	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1245_c0_g1_2052_TPlot.pdf
TRINITY_DN1245_c0_g1:2078	si_s458	TRINITY_DN1245_c0_g1	2066	2087	2078	-29.30	-20.30	0.692832764505119	9.5	4-13,2084-2075;14-19,2073-2068	1-3,2087-2085[UP5];x-x,2074-2074[BULt];20-21,2067-2066[UP3]	..((((((.((((((((((...&...))))))))))-))))))..	CCGGAUGUGGAGAUAGUUGAGG&CAACAAUUAUCUC-AUAUCCAA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN1245_c0_g1_2078_TPlot.pdf
TRINITY_DN1245_c0_g1:2079	si_s457	TRINITY_DN1245_c0_g1	2067	2088	2079	-30.00	-20.30	0.676666666666667	10.5	5-14,2084-2075;15-20,2073-2068	1-4,2088-2085[UP5];x-x,2074-2074[BULt];21-21,2067-2067[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	CGGAUGUGGAGAUAGUUGAGGC&ACAACAAUUAUCUC-AUAUCCA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN1245_c0_g1_2079_TPlot.pdf
TRINITY_DN1245_c0_g1:2116	si_s15	TRINITY_DN1245_c0_g1	2105	2125	2116	-25.60	-16.90	0.66015625	18	8-20,2118-2106	1-7,2125-2119[UP5];21-21,2105-2105[UP3]	.(((((((((((((.......&.......))))))))))))).	AGCGGUCGGUGUGGGGCUUGU&AUUAUUACUAUAUUGAUUGCA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN1245_c0_g1_2116_TPlot.pdf
TRINITY_DN1245_c0_g1:2205	si_s633	TRINITY_DN1245_c0_g1	2193	2214	2205	-37.90	-26.30	0.693931398416887	8	1-4,2214-2211;6-12,2209-2203;14-19,2201-2196;20-21,2194-2193	5-5,2210-2210[SIL];13-13,2202-2202[SIL];x-x,2195-2195[BULt]	((.((((((.(((((((.((((&)))).))))))).))))))-))	GGUGGCAGAGGCUUGCGUGAAG&CUUUUCGUAGGCGUUUGCC-CU	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN1245_c0_g1_2205_TPlot.pdf
TRINITY_DN1245_c0_g1:2206	si_s632	TRINITY_DN1245_c0_g1	2195	2215	2206	-38.20	-26.90	0.704188481675393	7.5	1-5,2215-2211;7-13,2209-2203;15-20,2201-2196	6-6,2210-2210[SIL];14-14,2202-2202[SIL];21-21,2195-2195[UP3]	.((((((.(((((((.(((((&))))).))))))).)))))).	UGGCAGAGGCUUGCGUGAAGA&UCUUUUCGUAGGCGUUUGCCC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN1245_c0_g1_2206_TPlot.pdf
TRINITY_DN1245_c0_g1:2208	si_s630	TRINITY_DN1245_c0_g1	2197	2217	2208	-35.60	-25.50	0.716292134831461	7	2-7,2216-2211;9-15,2209-2203;17-21,2201-2197	1-1,2217-2217[UP5];8-8,2210-2210[SIL];16-16,2202-2202[SIL]	(((((.(((((((.((((((.&.)))))).))))))).)))))	GCAGAGGCUUGCGUGAAGAUG&GAUCUUUUCGUAGGCGUUUGC	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN1245_c0_g1_2208_TPlot.pdf
TRINITY_DN1245_c0_g1:2209	si_s629	TRINITY_DN1245_c0_g1	2198	2220	2209	-34.60	-22.80	0.658959537572254	10	1-3,2220-2218;4-8,2215-2211;10-16,2209-2203;18-21,2201-2198	x-x,2217-2216[BULt];9-9,2210-2210[SIL];17-17,2202-2202[SIL]	((((.(((((((.(((((..(((&)))--))))).))))))).))))	CAGAGGCUUGCGUGAAGAUGUCG&CGA--UCUUUUCGUAGGCGUUUG	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN1245_c0_g1_2209_TPlot.pdf
TRINITY_DN1245_c0_g1:5274	si_a814	TRINITY_DN1245_c0_g1	5263	5283	5274	-32.90	-21.60	0.656534954407295	7	2-11,5282-5273;13-15,5271-5269;17-18,5267-5266	1-1,5283-5283[UP5];12-12,5272-5272[SIL];16-16,5268-5268[SIL];19-21,5265-5263[UP3]	...((.(((.((((((((((.&.)))))))))).))).))...	AUCCCCUUCAUCUUCUUCGCC&AGCGAAGAAGAAGAAAGGAAA	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN1245_c0_g1_5274_TPlot.pdf
TRINITY_DN1245_c0_g1:5275	si_a813	TRINITY_DN1245_c0_g1	5264	5284	5275	-32.90	-21.60	0.656534954407295	7	3-12,5282-5273;14-16,5271-5269;18-19,5267-5266	1-2,5284-5283[UP5];13-13,5272-5272[SIL];17-17,5268-5268[SIL];20-21,5265-5264[UP3]	..((.(((.((((((((((..&..)))))))))).))).))..	UCCCCUUCAUCUUCUUCGCCU&AAGCGAAGAAGAAGAAAGGAA	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN1245_c0_g1_5275_TPlot.pdf
TRINITY_DN12464_c1_g1:196	si_s40	TRINITY_DN12464_c1_g1	182	205	196	-24.30	-15.90	0.654320987654321	8.5	1-15,205-191;16-21,187-182	x-x,190-188[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GAGGUUGGUCAAUUAUUGGGGGUU&AAUCUUUAAUAAUUG---GAUUUC	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN12464_c1_g1_196_TPlot.pdf
TRINITY_DN12464_c1_g1:373	si_a548	TRINITY_DN12464_c1_g1	362	383	373	-27.20	-17.90	0.658088235294118	5.5	2-6,382-378;8-9,376-375;10-21,373-362	1-1,383-383[UP5];7-7,377-377[SIL];x-x,374-374[BULt]	((((((((((((.((.(((((.&.))))).))-))))))))))))	GAGAUGAAGAAACUAAAUUGAU&UUCAAUCUA-UUUCUUUAUCUC	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN12464_c1_g1_373_TPlot.pdf
TRINITY_DN12464_c1_g1:74	si_s570	TRINITY_DN12464_c1_g1	63	83	74	-30.50	-20.00	0.655737704918033	7	1-7,83-77;9-18,75-66	8-8,76-76[SIL];19-21,65-63[UP3]	...((((((((((.(((((((&))))))).))))))))))...	ACAUUUUAUUCUUGGUCCUGA&UCGGGACAAGGAAUAAAAAAA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s570_TRINITY_DN12464_c1_g1_74_TPlot.pdf
TRINITY_DN12468_c0_g1:267	si_a192	TRINITY_DN12468_c0_g1	256	276	267	-31.90	-22.40	0.702194357366771	7.5	3-8,274-269;10-21,267-256	1-2,276-275[UP5];9-9,268-268[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UUGUUAGUGAAUUGGGAAGUG&UCUUUCCCUGUUCACUAAUAA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN12468_c0_g1_267_TPlot.pdf
TRINITY_DN12468_c0_g4:81	si_s889	TRINITY_DN12468_c0_g4	64	90	81	-28.80	-19.30	0.670138888888889	13.5	2-12,89-79;13-17,73-69;18-21,67-64	1-1,90-90[UP5];x-x,78-74[BULt];x-x,68-68[BULt]	((((.(((((.....(((((((((((.&.)))))))))))-----)))))-))))	GAAGAAGAAGCCUGUGCCUGUUUAUUG&AAAUAAAUAGGC-----UUUCU-CUUC	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN12468_c0_g4_81_TPlot.pdf
TRINITY_DN1246_c0_g1:1924	si_s741	TRINITY_DN1246_c0_g1	1914	1933	1924	-33.80	-22.50	0.665680473372781	7.5	1-10,1933-1924;12-16,1923-1919	11-11,x-x[BULq];17-21,1918-1914[UP3]	.....(((((-((((((((((&)))))))))).))))).....	UACAUGUCGA-CUAUUCACCC&GGGUGAAUAGAUUGACCUUAA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN1246_c0_g1_1924_TPlot.pdf
TRINITY_DN1246_c0_g1:1925	si_s740	TRINITY_DN1246_c0_g1	1915	1934	1925	-35.20	-24.90	0.707386363636364	6.5	1-11,1934-1924;13-17,1923-1919	12-12,x-x[BULq];18-21,1918-1915[UP3]	....(((((-(((((((((((&))))))))))).)))))....	ACAUGUCGA-CUAUUCACCCG&CGGGUGAAUAGAUUGACCUUA	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN1246_c0_g1_1925_TPlot.pdf
TRINITY_DN1246_c0_g1:1926	si_s739	TRINITY_DN1246_c0_g1	1916	1935	1926	-35.60	-25.10	0.705056179775281	5.5	2-12,1934-1924;14-18,1923-1919	1-1,1935-1935[UP5];13-13,x-x[BULq];19-21,1918-1916[UP3]	...(((((-(((((((((((.&.))))))))))).)))))...	CAUGUCGA-CUAUUCACCCGG&ACGGGUGAAUAGAUUGACCUU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN1246_c0_g1_1926_TPlot.pdf
TRINITY_DN1246_c0_g1:1927	si_s738	TRINITY_DN1246_c0_g1	1917	1936	1927	-37.60	-25.10	0.667553191489362	6.5	3-13,1934-1924;15-19,1923-1919	1-2,1936-1935[UP5];14-14,x-x[BULq];20-21,1918-1917[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	AUGUCGA-CUAUUCACCCGGC&GACGGGUGAAUAGAUUGACCU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s738_TRINITY_DN1246_c0_g1_1927_TPlot.pdf
TRINITY_DN1246_c0_g1:3565	si_a64	TRINITY_DN1246_c0_g1	3554	3574	3565	-29.40	-24.80	0.843537414965986	5.5	1-14,3574-3561;16-21,3559-3554	15-15,3560-3560[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	GAGCAGCUUGGAGGAAGUGAG&CUCGCUUCUUUCAAAUUGUUU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN1246_c0_g1_3565_TPlot.pdf
TRINITY_DN1246_c0_g1:3612	si_a448	TRINITY_DN1246_c0_g1	3601	3621	3612	-25.50	-16.60	0.650980392156863	8	2-6,3620-3616;8-19,3614-3603	1-1,3621-3621[UP5];7-7,3615-3615[SIL];20-21,3602-3601[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	UGGUGGCGACAAUUCUUUCAA&AUGAGAUAAUUGUUGUUAUAU	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN1246_c0_g1_3612_TPlot.pdf
TRINITY_DN1246_c0_g1:726	si_a759	TRINITY_DN1246_c0_g1	713	735	726	-32.60	-21.64	0.663803680981595	12	1-5,735-731;7-11,729-725;16-21,718-713	6-6,730-730[SIL];12-15,724-719[AILt]	((((((......(((((.(((((&))))).)))))--....))))))	UCAAUCUGGGCCGCCCACAGGAG&CUCCUUUGGGU--UUUUGAUUGA	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN1246_c0_g1_726_TPlot.pdf
TRINITY_DN12478_c0_g1:1820	si_s74	TRINITY_DN12478_c0_g1	1809	1829	1820	-25.00	-17.00	0.68	7	1-16,1829-1814	17-21,1813-1809[UP3]	.....((((((((((((((((&)))))))))))))))).....	AACUAGAAAGAAAAGAAGUAG&CUAUUUUUUUUCUUUCCUUUC	2	0.99999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12478_c0_g1_1820_TPlot.pdf
TRINITY_DN12478_c0_g1:1822	si_s72	TRINITY_DN12478_c0_g1	1811	1831	1822	-24.10	-17.00	0.705394190871369	8	3-18,1829-1814	1-2,1831-1830[UP5];19-21,1813-1811[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUAGAAAGAAAAGAAGUAGCU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN12478_c0_g1_1822_TPlot.pdf
TRINITY_DN12478_c0_g1:2070	si_s76	TRINITY_DN12478_c0_g1	2059	2079	2070	-23.60	-16.80	0.711864406779661	6	1-8,2079-2072;10-11,2070-2069;13-21,2067-2059	9-9,2071-2071[SIL];12-12,2068-2068[SIL]	(((((((((.((.((((((((&)))))))).)).)))))))))	AGGAGAGGAUAGCAAAAAAGU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN12478_c0_g1_2070_TPlot.pdf
TRINITY_DN1247_c0_g1:1790	si_a470	TRINITY_DN1247_c0_g1	1779	1799	1790	-21.30	-15.30	0.71830985915493	11	4-20,1796-1780	1-3,1799-1797[UP5];21-21,1779-1779[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGUGACGGUGAUUAUGUAGUC&UAAUAUGUAAUUAUUGUUAUA	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN1247_c0_g1_1790_TPlot.pdf
TRINITY_DN1247_c0_g1:2155	si_a665	TRINITY_DN1247_c0_g1	2144	2164	2155	-29.60	-19.50	0.658783783783784	11	3-7,2162-2158;9-16,2156-2149	1-2,2164-2163[UP5];8-8,2157-2157[SIL];17-21,2148-2144[UP3]	.....((((((((.(((((..&..))))).)))))))).....	AAAGCGGAAUCAAAGGGCACU&AAUGCCUAUUGAUUCCUUAUU	4	0.999983678376299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN1247_c0_g1_2155_TPlot.pdf
TRINITY_DN1247_c0_g1:2875	si_s599	TRINITY_DN1247_c0_g1	2864	2884	2875	-27.80	-19.30	0.694244604316547	10	6-21,2879-2864	1-5,2884-2880[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAAAAGAUUUGCUUGUCAUA&AAAUCCAAGCGAAUCUUUUUU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN1247_c0_g1_2875_TPlot.pdf
TRINITY_DN12483_c0_g1:3488	si_s488	TRINITY_DN12483_c0_g1	3477	3495	3488	-18.30	-12.10	0.66120218579235	7	1-5,3495-3491;8-20,3490-3478	6-7,x-x[BULq];21-21,3477-3477[UP3]	.(((((((((((((--(((((&)))))..))))))))))))).	CUGUUUAUAUUUAG--GAAUA&UAUUUAUUUAAAUAUAAACAA	4	0.99976599203554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN12483_c0_g1_3488_TPlot.pdf
TRINITY_DN12483_c0_g1:3718	si_s429	TRINITY_DN12483_c0_g1	3707	3731	3718	-21.10	-14.20	0.672985781990521	11.5	1-8,3731-3724;9-18,3719-3710	x-x,3723-3720[BULt];19-21,3709-3707[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	UAAAUGUGAUUAUAAACUGUUAUAU&AUAUAACA----AUAAUUACAUAUU	2	0.95546755294484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN12483_c0_g1_3718_TPlot.pdf
TRINITY_DN12483_c0_g1:3719	si_s428	TRINITY_DN12483_c0_g1	3708	3732	3719	-21.50	-15.50	0.720930232558139	10.5	1-9,3732-3724;10-19,3719-3710	x-x,3723-3720[BULt];20-21,3709-3708[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	AAAUGUGAUUAUAAACUGUUAUAUA&UAUAUAACA----AUAAUUACAUAU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN12483_c0_g1_3719_TPlot.pdf
TRINITY_DN12483_c0_g1:3727	si_s424	TRINITY_DN12483_c0_g1	3712	3736	3727	-22.90	-15.10	0.65938864628821	9.5	4-13,3733-3724;14-21,3719-3712	1-3,3736-3734[UP5];x-x,3723-3720[BULt]	((((((((....((((((((((...&...))))))))))----))))))))	GUGAUUAUAAACUGUUAUAUAGUGU&AUUCUAUAUAACA----AUAAUUAC	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN12483_c0_g1_3727_TPlot.pdf
TRINITY_DN12485_c0_g1:2328	si_s808	TRINITY_DN12485_c0_g1	2317	2337	2328	-28.60	-19.40	0.678321678321678	8	2-7,2336-2331;10-19,2328-2319	1-1,2337-2337[UP5];8-9,2330-2329[SIL];20-21,2318-2317[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	AAAAGAAAAGGUUGUGAAGAG&AUCUUCGUUACCUUUUCUUAA	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN12485_c0_g1_2328_TPlot.pdf
TRINITY_DN12486_c0_g1:1855	si_a353	TRINITY_DN12486_c0_g1	1844	1865	1855	-24.00	-15.60	0.65	6.5	1-8,1865-1858;9-19,1856-1846	x-x,1857-1857[BULt];20-21,1845-1844[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	CAAUCGAAAUGGAUAUUGAUAU&AUAUUAAU-UCUAUUUUGAUCG	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN12486_c0_g1_1855_TPlot.pdf
TRINITY_DN12486_c0_g1:1856	si_a352	TRINITY_DN12486_c0_g1	1845	1866	1856	-22.50	-16.80	0.746666666666667	5.5	1-9,1866-1858;10-20,1856-1846	x-x,1857-1857[BULt];21-21,1845-1845[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AAUCGAAAUGGAUAUUGAUAUU&AAUAUUAAU-UCUAUUUUGAUC	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN12486_c0_g1_1856_TPlot.pdf
TRINITY_DN12486_c0_g1:1859	si_a350	TRINITY_DN12486_c0_g1	1847	1868	1859	-20.30	-15.80	0.778325123152709	7	3-11,1866-1858;12-21,1856-1847	1-2,1868-1867[UP5];x-x,1857-1857[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	UCGAAAUGGAUAUUGAUAUUAA&AAAAUAUUAAU-UCUAUUUUGA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN12486_c0_g1_1859_TPlot.pdf
TRINITY_DN12488_c0_g1:135	si_s789	TRINITY_DN12488_c0_g1	116	144	135	-26.20	-17.80	0.679389312977099	21	3-11,142-134;12-21,125-116	1-2,144-143[UP5];x-x,133-126[BULt]	((((((((((........(((((((((..&..)))))))))--------))))))))))	GUAAAAUGCGUGUGUUGUGGCUUGUUUGA&UAAAACAAGCU--------CGUAUUUUAU	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN12488_c0_g1_135_TPlot.pdf
TRINITY_DN12489_c0_g1:2904	si_a639	TRINITY_DN12489_c0_g1	2893	2913	2904	-23.60	-16.10	0.682203389830509	8	2-2,2912-2912;5-19,2909-2895	1-1,2913-2913[UP5];3-4,2911-2910[SIL];20-21,2894-2893[UP3]	..(((((((((((((((..(.&.)..)))))))))))))))..	ACAUAUUACUCAAGAAAGGCU&CGAUUUUUUUGAGUAAUAUAU	3	0.999982117446275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN12489_c0_g1_2904_TPlot.pdf
TRINITY_DN12489_c0_g1:317	si_s765	TRINITY_DN12489_c0_g1	306	326	317	-25.70	-19.60	0.762645914396887	8	3-10,324-317;12-20,315-307	1-2,326-325[UP5];11-11,316-316[SIL];21-21,306-306[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	AAGUAGUGAUCGAUCGUUGGA&AACAACGAUUAAUUACUAUUG	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s765_TRINITY_DN12489_c0_g1_317_TPlot.pdf
TRINITY_DN12489_c0_g1:318	si_s764	TRINITY_DN12489_c0_g1	307	327	318	-25.70	-19.20	0.747081712062257	9	4-11,324-317;13-21,315-307	1-3,327-325[UP5];12-12,316-316[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AGUAGUGAUCGAUCGUUGGAU&CAACAACGAUUAAUUACUAUU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN12489_c0_g1_318_TPlot.pdf
TRINITY_DN12489_c0_g1:319	si_s763	TRINITY_DN12489_c0_g1	308	328	319	-26.50	-18.40	0.694339622641509	10	5-12,324-317;14-21,315-308	1-4,328-325[UP5];13-13,316-316[SIL]	((((((((.((((((((....&....)))))))).))))))))	GUAGUGAUCGAUCGUUGGAUA&ACAACAACGAUUAAUUACUAU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s763_TRINITY_DN12489_c0_g1_319_TPlot.pdf
TRINITY_DN12489_c0_g2:2070	si_a35	TRINITY_DN12489_c0_g2	2058	2079	2070	-37.80	-26.60	0.703703703703704	8	1-5,2079-2075;8-14,2072-2066;15-20,2064-2059	6-7,2074-2073[SIL];x-x,2065-2065[BULt];21-21,2058-2058[UP3]	.((((((.(((((((..(((((&)))))..)))))))-)))))).	AGGACCUAACCGGUCAGGGAAU&GUUCUAAGACCGGU-AGGUCUA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN12489_c0_g2_2070_TPlot.pdf
TRINITY_DN12489_c0_g2:2071	si_a34	TRINITY_DN12489_c0_g2	2059	2080	2071	-38.10	-26.30	0.690288713910761	8.5	2-6,2079-2075;9-15,2072-2066;16-21,2064-2059	1-1,2080-2080[UP5];7-8,2074-2073[SIL];x-x,2065-2065[BULt]	((((((.(((((((..(((((.&.)))))..)))))))-))))))	GGACCUAACCGGUCAGGGAAUA&AGUUCUAAGACCGGU-AGGUCU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a34_TRINITY_DN12489_c0_g2_2071_TPlot.pdf
TRINITY_DN12489_c0_g3:712	si_a548	TRINITY_DN12489_c0_g3	701	721	712	-27.20	-19.50	0.716911764705882	8.5	5-20,717-702	1-4,721-718[UP5];21-21,701-701[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAGAUGAAGAAAUAGAUAAUA&UUCAAUCUAUUUCUUUAUCUC	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN12489_c0_g3_712_TPlot.pdf
TRINITY_DN1248_c2_g1:2553	si_a475	TRINITY_DN1248_c2_g1	2542	2562	2553	-23.50	-15.40	0.65531914893617	7.5	1-13,2562-2550;16-21,2547-2542	14-15,2549-2548[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UUUUAUUAAGCAGUGGUUGCA&UGUAAUUAUUGUUAUAUAGAA	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN1248_c2_g1_2553_TPlot.pdf
TRINITY_DN1248_c2_g1:3171	si_a329	TRINITY_DN1248_c2_g1	3156	3180	3171	-29.60	-19.70	0.66554054054054	11	1-12,3180-3169;13-18,3165-3160;19-21,3158-3156	x-x,3168-3166[BULt];x-x,3159-3159[BULt]	(((.((((((...((((((((((((&))))))))))))---))))))-)))	CGGCGGCGAGAGAGAGUAAAAGGAU&AUUUUUUUAUUC---CUUGUC-CCG	2	0.999953187730242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1248_c2_g1_3171_TPlot.pdf
TRINITY_DN1248_c2_g1:3172	si_a328	TRINITY_DN1248_c2_g1	3157	3181	3172	-30.10	-21.10	0.700996677740864	8	1-13,3181-3169;14-19,3165-3160;20-21,3158-3157	x-x,3168-3166[BULt];x-x,3159-3159[BULt]	((.((((((...(((((((((((((&)))))))))))))---))))))-))	GGCGGCGAGAGAGAGUAAAAGGAUC&GAUUUUUUUAUUC---CUUGUC-CC	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1248_c2_g1_3172_TPlot.pdf
TRINITY_DN1248_c2_g1:3488	si_a833	TRINITY_DN1248_c2_g1	3474	3498	3488	-25.60	-16.90	0.66015625	6.5	2-6,3497-3493;7-16,3491-3482;17-21,3478-3474	1-1,3498-3498[UP5];x-x,3492-3492[BULt];x-x,3481-3479[BULt]	(((((...((((((((((.(((((.&.)))))-))))))))))---)))))	GCAGCCGUUUCUAUUUUUCUUUCUC&AAGAAA-AAAAAUAGAA---GUUGC	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN1248_c2_g1_3488_TPlot.pdf
TRINITY_DN1248_c2_g1:3559	si_a887	TRINITY_DN1248_c2_g1	3548	3569	3559	-22.90	-15.50	0.676855895196507	4	2-9,3568-3561;10-21,3559-3548	1-1,3569-3569[UP5];x-x,3560-3560[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	UUAUUAUUAUUAUUAUUGAUUA&CAAUCAAUA-UAGUAAUAAUAA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN1248_c2_g1_3559_TPlot.pdf
TRINITY_DN12492_c0_g1:1439	si_s198	TRINITY_DN12492_c0_g1	1429	1448	1439	-30.80	-21.40	0.694805194805195	4	1-13,1448-1436;16-21,1434-1429	14-15,1435-1435[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	CGACUGA-ACGUUCCAAAAUG&UAUUUUGGAAUGUACCAGUUG	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN12492_c0_g1_1439_TPlot.pdf
TRINITY_DN12492_c0_g1:1446	si_s191	TRINITY_DN12492_c0_g1	1435	1456	1446	-26.60	-17.30	0.650375939849624	11.5	5-7,1452-1450;8-20,1448-1436	1-4,1456-1453[UP5];x-x,1449-1449[BULt];21-21,1435-1435[UP3]	.(((((((((((((.(((....&....)))-))))))))))))).	AACGUUCCAAAAUGAAUCUAAC&UAACGAU-UAUUUUGGAAUGUA	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN12492_c0_g1_1446_TPlot.pdf
TRINITY_DN12493_c0_g1:2593	si_a496	TRINITY_DN12493_c0_g1	2582	2602	2593	-32.40	-23.00	0.709876543209877	11.5	4-10,2599-2593;13-21,2590-2582	1-3,2602-2600[UP5];11-12,2592-2591[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GGGGAGAUGUUAAACGGCGAU&UAUGUCGUUUUUCGUCUUCCU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN12493_c0_g1_2593_TPlot.pdf
TRINITY_DN12496_c0_g1:27	si_a411	TRINITY_DN12496_c0_g1	16	36	27	-17.90	-11.90	0.664804469273743	9	1-10,36-27;13-17,24-20	11-12,26-25[SIL];18-21,19-16[UP3]	....(((((..((((((((((&))))))))))..)))))....	UAUGAUUUAUUUAUAAACAGA&UUUGUUUAUAUUUAAAUAAAU	2	0.999998248693552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN12496_c0_g1_27_TPlot.pdf
TRINITY_DN124_c0_g1:1605	si_s446	TRINITY_DN124_c0_g1	1593	1614	1605	-21.30	-14.70	0.690140845070423	8	1-14,1614-1601;15-17,1599-1597	x-x,1600-1600[BULt];18-21,1596-1593[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	CCCAUGUAUGUUGUGUAUAGUA&UAUUAUAUAUAACA-ACAAUUA	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN124_c0_g1_1605_TPlot.pdf
TRINITY_DN124_c0_g1:1607	si_s444	TRINITY_DN124_c0_g1	1595	1616	1607	-22.80	-15.80	0.692982456140351	7	2-16,1615-1601;17-19,1599-1597	1-1,1616-1616[UP5];x-x,1600-1600[BULt];20-21,1596-1595[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	CAUGUAUGUUGUGUAUAGUAUU&CAUAUUAUAUAUAACA-ACAAU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN124_c0_g1_1607_TPlot.pdf
TRINITY_DN124_c0_g1:1612	si_s439	TRINITY_DN124_c0_g1	1601	1621	1612	-21.50	-16.00	0.744186046511628	5	2-5,1620-1617;7-21,1615-1601	1-1,1621-1621[UP5];6-6,1616-1616[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	UGUUGUGUAUAGUAUUUAAUA&AAUUACAUAUUAUAUAUAACA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN124_c0_g1_1612_TPlot.pdf
TRINITY_DN124_c0_g1:1613	si_s438	TRINITY_DN124_c0_g1	1602	1622	1613	-21.20	-14.60	0.688679245283019	7	3-6,1620-1617;8-21,1615-1602	1-2,1622-1621[UP5];7-7,1616-1616[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GUUGUGUAUAGUAUUUAAUAU&UAAUUACAUAUUAUAUAUAAC	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN124_c0_g1_1613_TPlot.pdf
TRINITY_DN124_c0_g1:1880	si_a79	TRINITY_DN124_c0_g1	1869	1889	1880	-22.20	-16.70	0.752252252252252	7	1-13,1889-1877;16-18,1874-1872	14-15,1876-1875[SIL];19-21,1871-1869[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	CCCCUUUUUGAUGAAGAACAA&UUGUUUUUCAUUAUUAAGAAA	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN124_c0_g1_1880_TPlot.pdf
TRINITY_DN124_c0_g1:2188	si_a401	TRINITY_DN124_c0_g1	2174	2197	2188	-22.60	-16.44	0.727433628318584	12	1-10,2197-2188;12-20,2183-2175	11-11,2187-2184[AILt];21-21,2174-2174[UP3]	.(((((((((....((((((((((&))))))))))---.))))))))).	CUAUAAACAACAUCGCAGUUCUGU&AUAGAAUUGU---UUUGUUUAUAU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN124_c0_g1_2188_TPlot.pdf
TRINITY_DN124_c0_g1:2189	si_a400	TRINITY_DN124_c0_g1	2175	2198	2189	-22.80	-17.44	0.764912280701754	11	1-11,2198-2188;13-21,2183-2175	12-12,2187-2184[AILt]	(((((((((....(((((((((((&)))))))))))---.)))))))))	UAUAAACAACAUCGCAGUUCUGUA&UAUAGAAUUGU---UUUGUUUAUA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN124_c0_g1_2189_TPlot.pdf
TRINITY_DN124_c0_g1:2190	si_a399	TRINITY_DN124_c0_g1	2176	2199	2190	-22.60	-15.94	0.705309734513274	11	2-12,2198-2188;14-21,2183-2176	1-1,2199-2199[UP5];13-13,2187-2184[AILt]	((((((((....(((((((((((.&.)))))))))))---.))))))))	AUAAACAACAUCGCAGUUCUGUAC&AUAUAGAAUUGU---UUUGUUUAU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN124_c0_g1_2190_TPlot.pdf
TRINITY_DN124_c0_g1:2191	si_a398	TRINITY_DN124_c0_g1	2180	2200	2191	-22.40	-15.30	0.683035714285714	9.5	3-13,2198-2188;16-19,2185-2182	1-2,2200-2199[UP5];14-15,2187-2186[SIL];20-21,2181-2180[UP3]	..((((..(((((((((((..&..)))))))))))..))))..	ACAACAUCGCAGUUCUGUACA&AAUAUAGAAUUGUUUUGUUUA	2	0.999739210418293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN124_c0_g1_2191_TPlot.pdf
TRINITY_DN12501_c0_g1:1162	si_s68	TRINITY_DN12501_c0_g1	1151	1171	1162	-23.10	-17.80	0.770562770562771	7.5	4-20,1168-1152	1-3,1171-1169[UP5];21-21,1151-1151[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAGGGAAGAAAUAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12501_c0_g1_1162_TPlot.pdf
TRINITY_DN12501_c0_g1:1163	si_s67	TRINITY_DN12501_c0_g1	1152	1172	1163	-25.60	-17.80	0.6953125	8.5	5-21,1168-1152	1-4,1172-1169[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGGGAAGAAAUAGAAGAAAC&GCAACUUCUAUUUUUUUUCUU	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN12501_c0_g1_1163_TPlot.pdf
TRINITY_DN12501_c0_g1:875	si_a66	TRINITY_DN12501_c0_g1	864	884	875	-26.70	-17.58	0.658426966292135	8	1-1,884-884;3-10,882-875;14-21,871-864	2-2,883-883[SIL];11-13,874-872[SIL]	((((((((...((((((((.(&).))))))))...))))))))	AAAAACAAGAAGAGAGAAGGG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN12501_c0_g1_875_TPlot.pdf
TRINITY_DN12501_c0_g1:876	si_a65	TRINITY_DN12501_c0_g1	865	885	876	-27.70	-18.48	0.667148014440433	7	1-2,885-884;4-11,882-875;15-21,871-865	3-3,883-883[SIL];12-14,874-872[SIL]	(((((((...((((((((.((&)).))))))))...)))))))	AAAACAAGAAGAGAGAAGGGA&UCGCUUCUUUCAAAUUGUUUU	2	0.999981363345207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN12501_c0_g1_876_TPlot.pdf
TRINITY_DN12501_c0_g4:1116	si_s73	TRINITY_DN12501_c0_g4	1104	1125	1116	-24.00	-15.70	0.654166666666667	6.5	1-2,1125-1124;4-15,1122-1111;17-21,1108-1104	3-3,1123-1123[SIL];16-16,1110-1109[AILt]	(((((..((((((((((((.((&)).))))))))))))-.)))))	AGAGGUUAAGAGAAGAAAUUGA&UCUAUUUUUUUUCUU-UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12501_c0_g4_1116_TPlot.pdf
TRINITY_DN12501_c0_g4:1268	si_a764	TRINITY_DN12501_c0_g4	1257	1278	1268	-28.90	-18.80	0.650519031141869	8.5	1-9,1278-1270;10-13,1268-1265;15-19,1263-1259	x-x,1269-1269[BULt];14-14,1264-1264[SIL];20-21,1258-1257[UP3]	..(((((.((((.(((((((((&)))))))))-)))).)))))..	AAGAGUUUGUCAUAGAACCCGA&UUGGGUUUU-UGAUUGAUUCAA	3	0.999999999868774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN12501_c0_g4_1268_TPlot.pdf
TRINITY_DN12501_c0_g4:1270	si_a763	TRINITY_DN12501_c0_g4	1258	1279	1270	-28.80	-19.50	0.677083333333333	7.5	1-10,1279-1270;11-14,1268-1265;16-20,1263-1259	x-x,1269-1269[BULt];15-15,1264-1264[SIL];21-21,1258-1258[UP3]	.(((((.((((.((((((((((&))))))))))-)))).))))).	AGAGUUUGUCAUAGAACCCGAA&UUUGGGUUUU-UGAUUGAUUCA	3	0.999999585852286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN12501_c0_g4_1270_TPlot.pdf
TRINITY_DN12501_c0_g4:207	si_a784	TRINITY_DN12501_c0_g4	196	216	207	-24.70	-17.30	0.700404858299595	8.5	1-8,216-209;10-17,207-200	9-9,208-208[SIL];18-21,199-196[UP3]	....((((((((.((((((((&)))))))).))))))))....	UUAUUGGAAAAGAAGAGGAGU&ACUCUUCUAUUUUUCUAUUUU	4	0.999999998522218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN12501_c0_g4_207_TPlot.pdf
TRINITY_DN12503_c0_g1:2434	si_a363	TRINITY_DN12503_c0_g1	2423	2443	2434	-26.40	-17.70	0.670454545454545	11	3-15,2441-2429	1-2,2443-2442[UP5];16-21,2428-2423[UP3]	......(((((((((((((..&..)))))))))))))......	CUACUAGAUCUGAUCAAGACA&UAUUUUGAUCGGAUCAAAAAU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN12503_c0_g1_2434_TPlot.pdf
TRINITY_DN12503_c0_g1:2435	si_a362	TRINITY_DN12503_c0_g1	2424	2444	2435	-28.00	-18.90	0.675	9	1-2,2444-2443;4-16,2441-2429	3-3,2442-2442[SIL];17-21,2428-2424[UP3]	.....(((((((((((((.((&)).))))))))))))).....	UACUAGAUCUGAUCAAGACAG&CUAUUUUGAUCGGAUCAAAAA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN12503_c0_g1_2435_TPlot.pdf
TRINITY_DN12503_c0_g1:2436	si_a361	TRINITY_DN12503_c0_g1	2425	2445	2436	-29.00	-20.30	0.7	7.5	1-3,2445-2443;5-17,2441-2429	4-4,2442-2442[SIL];18-21,2428-2425[UP3]	....(((((((((((((.(((&))).)))))))))))))....	ACUAGAUCUGAUCAAGACAGA&UCUAUUUUGAUCGGAUCAAAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN12503_c0_g1_2436_TPlot.pdf
TRINITY_DN12504_c0_g1:1318	si_a492	TRINITY_DN12504_c0_g1	1307	1327	1318	-30.20	-20.90	0.69205298013245	13.5	7-21,1321-1307	1-6,1327-1322[UP5]	(((((((((((((((......&......)))))))))))))))	GGAUGAAGAGCGACAAUCAUG&AGAAUAUGUCGUUUUUCGUCU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN12504_c0_g1_1318_TPlot.pdf
TRINITY_DN12506_c0_g1:1524	si_a374	TRINITY_DN12506_c0_g1	1513	1532	1524	-25.60	-17.22	0.67265625	11.5	1-5,1532-1528;10-19,1524-1515	6-9,1527-1525[AILq];20-21,1514-1513[UP3]	..((((((((((...-(((((&)))))....))))))))))..	UUUUCGAAGUCAACG-UGGUC&GAUCAAAAAUGAUUUCGAAUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN12506_c0_g1_1524_TPlot.pdf
TRINITY_DN12509_c0_g1:1165	si_a113	TRINITY_DN12509_c0_g1	1154	1174	1165	-26.20	-17.70	0.675572519083969	15	7-18,1168-1157	1-6,1174-1169[UP5];19-21,1156-1154[UP3]	...((((((((((((......&......))))))))))))...	GGGAAGACGAGCUCGAUGAGG&AAAAUACGAGCUUGUUUUAUA	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN12509_c0_g1_1165_TPlot.pdf
TRINITY_DN12509_c0_g1:1166	si_a112	TRINITY_DN12509_c0_g1	1155	1175	1166	-26.20	-17.70	0.675572519083969	16	8-19,1168-1157	1-7,1175-1169[UP5];20-21,1156-1155[UP3]	..((((((((((((.......&.......))))))))))))..	GGAAGACGAGCUCGAUGAGGA&UAAAAUACGAGCUUGUUUUAU	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN12509_c0_g1_1166_TPlot.pdf
TRINITY_DN12509_c0_g1:2576	si_a154	TRINITY_DN12509_c0_g1	2565	2586	2576	-27.00	-18.20	0.674074074074074	13	3-7,2584-2580;9-18,2577-2568	1-2,2586-2585[UP5];8-8,2579-2578[AILt];19-21,2567-2565[UP3]	...((((((((((..(((((..&..)))))-.))))))))))...	CCGAGAUUGACCUGCGGGACUC&UUGUUUU-AAGGUCAAUCUAUU	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN12509_c0_g1_2576_TPlot.pdf
TRINITY_DN12509_c0_g1:2612	si_a636	TRINITY_DN12509_c0_g1	2601	2621	2612	-26.30	-18.20	0.692015209125475	10.5	1-5,2621-2617;8-17,2614-2605	6-7,2616-2615[SIL];18-21,2604-2601[UP3]	....((((((((((..(((((&)))))..))))))))))....	CGCAGCUCAAGAAAUCCGGCA&UGUCGAUUUUUUUGAGUAAUA	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN12509_c0_g1_2612_TPlot.pdf
TRINITY_DN1250_c0_g1:659	si_s429	TRINITY_DN1250_c0_g1	648	668	659	-21.10	-14.90	0.706161137440758	6.5	2-11,667-658;13-18,656-651	1-1,668-668[UP5];12-12,657-657[SIL];19-21,650-648[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	UAAGUGUAAAUAUUGUUAUAA&AUAUAACAAUAAUUACAUAUU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN1250_c0_g1_659_TPlot.pdf
TRINITY_DN12512_c0_g1:1172	si_s504	TRINITY_DN12512_c0_g1	1161	1181	1172	-24.70	-17.10	0.692307692307692	7	1-15,1181-1167	16-21,1166-1161[UP3]	......(((((((((((((((&)))))))))))))))......	UAUUUUUAGAGUUGUUUUGUU&AACAAAACAAUUCUAUAUUCU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN12512_c0_g1_1172_TPlot.pdf
TRINITY_DN12512_c0_g1:1179	si_s497	TRINITY_DN12512_c0_g1	1168	1189	1179	-22.00	-16.60	0.754545454545455	8.5	4-9,1186-1181;10-21,1179-1168	1-3,1189-1187[UP5];x-x,1180-1180[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AGAGUUGUUUUGUUUUGUAAAU&AAAUAUAAA-CAAAACAAUUCU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN12512_c0_g1_1179_TPlot.pdf
TRINITY_DN12512_c0_g1:1181	si_s496	TRINITY_DN12512_c0_g1	1169	1190	1181	-21.70	-15.50	0.714285714285714	10.5	5-10,1186-1181;11-21,1179-1169	1-4,1190-1187[UP5];x-x,1180-1180[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GAGUUGUUUUGUUUUGUAAAUA&UAAAUAUAAA-CAAAACAAUUC	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN12512_c0_g1_1181_TPlot.pdf
TRINITY_DN12514_c0_g1:269	si_s803	TRINITY_DN12514_c0_g1	257	278	269	-26.00	-17.90	0.688461538461538	8	1-13,278-266;15-17,263-261	14-14,265-264[AILt];18-21,260-257[UP3]	....(((..(((((((((((((&)))))))))))))-.)))....	AAGUGGUUUACGAAGAUGGAAU&AUUUUAUCUUCGU-UACCUUUU	4	0.999999989712558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12514_c0_g1_269_TPlot.pdf
TRINITY_DN12514_c0_g1:270	si_s802	TRINITY_DN12514_c0_g1	258	279	270	-26.40	-17.90	0.678030303030303	8	2-14,278-266;16-18,263-261	1-1,279-279[UP5];15-15,265-264[AILt];19-21,260-258[UP3]	...(((..(((((((((((((.&.)))))))))))))-.)))...	AGUGGUUUACGAAGAUGGAAUU&UAUUUUAUCUUCGU-UACCUUU	3	0.999999884316333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN12514_c0_g1_270_TPlot.pdf
TRINITY_DN12514_c0_g1:273	si_s799	TRINITY_DN12514_c0_g1	261	283	273	-30.00	-21.20	0.706666666666667	6.5	1-5,283-279;6-17,277-266;19-21,263-261	x-x,278-278[BULt];18-18,265-264[AILt]	(((..((((((((((((.(((((&)))))-))))))))))))-.)))	GGUUUACGAAGAUGGAAUUACGG&UCGUA-UUUUAUCUUCGU-UACC	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN12514_c0_g1_273_TPlot.pdf
TRINITY_DN1251_c0_g1:1152	si_a402	TRINITY_DN1251_c0_g1	1141	1161	1152	-22.40	-14.60	0.651785714285714	10	1-7,1161-1155;9-16,1153-1146	8-8,1154-1154[SIL];17-21,1145-1141[UP3]	.....((((((((.(((((((&))))))).)))))))).....	AGAUCAAACAGGAGGAUUCUA&UAGAAUUGUUUUGUUUAUAUU	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN1251_c0_g1_1152_TPlot.pdf
TRINITY_DN1251_c0_g1:1196	si_a351	TRINITY_DN1251_c0_g1	1185	1205	1196	-20.50	-16.70	0.814634146341463	7	3-19,1203-1187	1-2,1205-1204[UP5];20-21,1186-1185[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UACGAAGUAGGAUUAAUAUCU&AAAUAUUAAUUCUAUUUUGAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN1251_c0_g1_1196_TPlot.pdf
TRINITY_DN1251_c0_g1:1197	si_a350	TRINITY_DN1251_c0_g1	1186	1206	1197	-20.30	-16.70	0.822660098522167	8	4-20,1203-1187	1-3,1206-1204[UP5];21-21,1186-1186[UP3]	.(((((((((((((((((...&...))))))))))))))))).	ACGAAGUAGGAUUAAUAUCUG&AAAAUAUUAAUUCUAUUUUGA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1251_c0_g1_1197_TPlot.pdf
TRINITY_DN1251_c0_g1:1198	si_a349	TRINITY_DN1251_c0_g1	1187	1207	1198	-21.30	-16.70	0.784037558685446	8.5	5-21,1203-1187	1-4,1207-1204[UP5]	(((((((((((((((((....&....)))))))))))))))))	CGAAGUAGGAUUAAUAUCUGC&GAAAAUAUUAAUUCUAUUUUG	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN1251_c0_g1_1198_TPlot.pdf
TRINITY_DN1251_c0_g1:1223	si_a667	TRINITY_DN1251_c0_g1	1211	1232	1223	-32.10	-21.40	0.666666666666667	7.5	2-5,1231-1228;7-10,1226-1223;11-20,1221-1212	1-1,1232-1232[UP5];6-6,1227-1227[SIL];x-x,1222-1222[BULt];21-21,1211-1211[UP3]	.((((((((((.((((.((((.&.)))).))))-)))))))))).	AGAAUAGGGAAUUCAACAGGUG&UGCCUAUUGA-UUCCUUAUUCA	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN1251_c0_g1_1223_TPlot.pdf
TRINITY_DN1251_c0_g1:1239	si_a70	TRINITY_DN1251_c0_g1	1229	1248	1239	-23.90	-17.60	0.736401673640168	5.5	1-11,1248-1238;13-21,1237-1229	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GGUGAAGAA-GAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1251_c0_g1_1239_TPlot.pdf
TRINITY_DN1251_c0_g1:1240	si_a69	TRINITY_DN1251_c0_g1	1230	1249	1240	-24.00	-17.50	0.729166666666667	5	2-12,1248-1238;14-21,1237-1230	1-1,1249-1249[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	GUGAAGAA-GAUUUGGAAGAG&UUCUUUCAAAUUGUUUUUCAU	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1251_c0_g1_1240_TPlot.pdf
TRINITY_DN1251_c0_g1:1241	si_a68	TRINITY_DN1251_c0_g1	1231	1250	1241	-25.40	-16.60	0.653543307086614	5	2-13,1249-1238;15-21,1237-1231	1-1,1250-1250[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UGAAGAA-GAUUUGGAAGAGA&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1251_c0_g1_1241_TPlot.pdf
TRINITY_DN12521_c0_g1:3142	si_a300	TRINITY_DN12521_c0_g1	3131	3151	3142	-28.20	-20.80	0.73758865248227	13	7-21,3145-3131	1-6,3151-3146[UP5]	(((((((((((((((......&......)))))))))))))))	GGUUCAGGCGAAUCUAAGUCU&UAAAAAAGAUUCGCUUGGAUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN12521_c0_g1_3142_TPlot.pdf
TRINITY_DN12521_c0_g1:3143	si_a299	TRINITY_DN12521_c0_g1	3132	3152	3143	-28.30	-20.30	0.717314487632509	14.5	8-21,3145-3132	1-7,3152-3146[UP5]	((((((((((((((.......&.......))))))))))))))	GUUCAGGCGAAUCUAAGUCUG&UUAAAAAAGAUUCGCUUGGAU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN12521_c0_g1_3143_TPlot.pdf
TRINITY_DN12521_c0_g1:3263	si_a503	TRINITY_DN12521_c0_g1	3249	3272	3263	-32.10	-21.00	0.654205607476635	12.5	2-6,3271-3267;8-12,3265-3261;13-21,3257-3249	1-1,3272-3272[UP5];7-7,3266-3266[SIL];x-x,3260-3258[BULt]	(((((((((...(((((.(((((.&.))))).)))))---)))))))))	CGUUCCGGGACUGAGGAGGAAGAU&UUUUUCGUCUUC---CUUGGAAUG	4	0.999999999636922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN12521_c0_g1_3263_TPlot.pdf
TRINITY_DN12523_c0_g1:562	si_s489	TRINITY_DN12523_c0_g1	551	571	562	-17.90	-13.10	0.731843575418994	8	1-13,571-559;16-19,556-553	14-15,558-557[SIL];20-21,552-551[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	AGUGUUGUUGUUUAAGUGGAU&AUUUAUUUAAAUAUAAACAAA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN12523_c0_g1_562_TPlot.pdf
TRINITY_DN12527_c0_g1:483	si_a205	TRINITY_DN12527_c0_g1	472	492	483	-24.70	-17.30	0.700404858299595	6.5	2-5,491-488;7-19,486-474	1-1,492-492[UP5];6-6,487-487[SIL];20-21,473-472[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	GAAGUUAGUUGAUUUUUUAGG&ACUAAUAAAUCGACUAAUUAA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN12527_c0_g1_483_TPlot.pdf
TRINITY_DN12527_c0_g1:484	si_a204	TRINITY_DN12527_c0_g1	473	493	484	-26.30	-17.30	0.657794676806084	7	3-6,491-488;8-20,486-474	1-2,493-492[UP5];7-7,487-487[SIL];21-21,473-473[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AAGUUAGUUGAUUUUUUAGGC&CACUAAUAAAUCGACUAAUUA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN12527_c0_g1_484_TPlot.pdf
TRINITY_DN12527_c0_g1:600	si_s601	TRINITY_DN12527_c0_g1	589	610	600	-28.30	-18.80	0.664310954063604	9	2-5,609-606;6-15,604-595	1-1,610-610[UP5];x-x,605-605[BULt];16-21,594-589[UP3]	......((((((((((.((((.&.))))-))))))))))......	UGUACUAAGAUUCGCUCUGGAG&AUCCA-AGCGAAUCUUUUUUAA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN12527_c0_g1_600_TPlot.pdf
TRINITY_DN12527_c0_g1:602	si_s599	TRINITY_DN12527_c0_g1	591	612	602	-27.80	-18.80	0.676258992805755	11	4-7,609-606;8-17,604-595	1-3,612-610[UP5];x-x,605-605[BULt];18-21,594-591[UP3]	....((((((((((.((((...&...))))-))))))))))....	UACUAAGAUUCGCUCUGGAGAU&AAAUCCA-AGCGAAUCUUUUUU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN12527_c0_g1_602_TPlot.pdf
TRINITY_DN12527_c0_g1:604	si_s597	TRINITY_DN12527_c0_g1	593	614	604	-28.40	-19.40	0.683098591549296	8	1-3,614-612;6-9,609-606;10-19,604-595	4-5,611-610[SIL];x-x,605-605[BULt];20-21,594-593[UP3]	..((((((((((.((((..(((&)))..))))-))))))))))..	CUAAGAUUCGCUCUGGAGAUAU&AUAAAUCCA-AGCGAAUCUUUU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN12527_c0_g1_604_TPlot.pdf
TRINITY_DN12529_c0_g1:1043	si_s771	TRINITY_DN12529_c0_g1	1032	1052	1043	-25.20	-17.10	0.678571428571429	9	4-17,1049-1036	1-3,1052-1050[UP5];18-21,1035-1032[UP3]	....((((((((((((((...&...))))))))))))))....	UAGCAGCAAUAGUAAUUACAA&GAUUAAUUACUAUUGCUAUAA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN12529_c0_g1_1043_TPlot.pdf
TRINITY_DN1252_c0_g1:1367	si_a79	TRINITY_DN1252_c0_g1	1356	1376	1367	-22.20	-15.10	0.68018018018018	8	1-6,1376-1371;8-17,1369-1360;19-20,1358-1357	7-7,1370-1370[SIL];18-18,1359-1359[SIL];21-21,1356-1356[UP3]	.((.((((((((((.((((((&)))))).)))))))))).)).	AUUGUUGAUAGUGAUGGACAG&UUGUUUUUCAUUAUUAAGAAA	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1252_c0_g1_1367_TPlot.pdf
TRINITY_DN1252_c0_g1:420	si_s72	TRINITY_DN1252_c0_g1	408	429	420	-24.10	-16.30	0.676348547717842	6	1-12,429-418;15-21,414-408	13-14,417-415[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	AAGGAAAAACGAAAAAGUAGAA&UUCUAUUUUUUU-UCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1252_c0_g1_420_TPlot.pdf
TRINITY_DN12535_c0_g2:2821	si_a870	TRINITY_DN12535_c0_g2	2810	2830	2821	-24.80	-16.60	0.669354838709677	9	3-12,2828-2819;14-18,2817-2813	1-2,2830-2829[UP5];13-13,2818-2818[SIL];19-21,2812-2810[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	CAAGCAACAAAGUCUUUGAAU&UAUUAAAGAUUUAGUUGCAAU	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN12535_c0_g2_2821_TPlot.pdf
TRINITY_DN12535_c0_g2:2822	si_a869	TRINITY_DN12535_c0_g2	2811	2831	2822	-24.80	-16.60	0.669354838709677	10	4-13,2828-2819;15-19,2817-2813	1-3,2831-2829[UP5];14-14,2818-2818[SIL];20-21,2812-2811[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	AAGCAACAAAGUCUUUGAAUU&UUAUUAAAGAUUUAGUUGCAA	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN12535_c0_g2_2822_TPlot.pdf
TRINITY_DN12535_c0_g2:2824	si_a867	TRINITY_DN12535_c0_g2	2813	2833	2824	-24.10	-16.10	0.66804979253112	11.5	6-15,2828-2819;17-21,2817-2813	1-5,2833-2829[UP5];16-16,2818-2818[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GCAACAAAGUCUUUGAAUUUG&AAUUAUUAAAGAUUUAGUUGC	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN12535_c0_g2_2824_TPlot.pdf
TRINITY_DN12538_c0_g1:290	si_s774	TRINITY_DN12538_c0_g1	279	299	290	-24.70	-16.40	0.663967611336032	13	4-16,296-284	1-3,299-297[UP5];17-21,283-279[UP3]	.....(((((((((((((...&...))))))))))))).....	GUAAAGUGGCAGUAGUGACGG&UAAUUACUAUUGCUAUAAAAC	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN12538_c0_g1_290_TPlot.pdf
TRINITY_DN12538_c0_g1:293	si_s771	TRINITY_DN12538_c0_g1	282	302	293	-25.20	-16.40	0.650793650793651	15.5	7-19,296-284	1-6,302-297[UP5];20-21,283-282[UP3]	..(((((((((((((......&......)))))))))))))..	AAGUGGCAGUAGUGACGGGUG&GAUUAAUUACUAUUGCUAUAA	4	0.99976599203554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN12538_c0_g1_293_TPlot.pdf
TRINITY_DN12539_c1_g1:632	si_a393	TRINITY_DN12539_c1_g1	621	641	632	-22.70	-15.30	0.674008810572687	13	5-10,637-632;12-21,630-621	1-4,641-638[UP5];11-11,631-631[SIL]	((((((((((.((((((....&....)))))).))))))))))	GAGGCGAUUCCGUGUUCAAAC&UUAAGAAUAUAGAAUUGUUUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN12539_c1_g1_632_TPlot.pdf
TRINITY_DN12539_c1_g2:216	si_a172	TRINITY_DN12539_c1_g2	204	225	216	-31.90	-22.30	0.699059561128527	9	2-4,224-222;6-11,220-215;13-21,212-204	1-1,225-225[UP5];5-5,221-221[SIL];12-12,214-213[AILt]	(((((((((..((((((.(((.&.))).))))))-.)))))))))	GUAUUGUCUUUGGCGGGCGAAG&AUUCACCCGUC-UAGAUAAUAU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN12539_c1_g2_216_TPlot.pdf
TRINITY_DN12539_c1_g2:298	si_a397	TRINITY_DN12539_c1_g2	288	307	298	-24.00	-16.70	0.695833333333333	4.5	1-12,307-296;14-14,294-294;17-21,292-288	13-13,295-295[SIL];15-16,293-293[AILq]	(((((.-(.((((((((((((&)))))))))))).)..)))))	AAACAU-GGAAUUCUGUAUUC&GAAUAUAGAAUUGUUUUGUUU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN12539_c1_g2_298_TPlot.pdf
TRINITY_DN12549_c0_g1:202	si_s813	TRINITY_DN12549_c0_g1	191	211	202	-27.10	-17.70	0.653136531365314	12	1-12,211-200	13-21,199-191[UP3]	.........((((((((((((&)))))))))))).........	CAGAUAUCUGAGAAGGUGGCG&CGUUACCUUUUCUUAAUAAUG	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN12549_c0_g1_202_TPlot.pdf
TRINITY_DN12549_c0_g1:203	si_s812	TRINITY_DN12549_c0_g1	192	212	203	-26.40	-17.80	0.674242424242424	12	2-13,211-200	1-1,212-212[UP5];14-21,199-192[UP3]	........((((((((((((.&.))))))))))))........	AGAUAUCUGAGAAGGUGGCGG&UCGUUACCUUUUCUUAAUAAU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN12549_c0_g1_203_TPlot.pdf
TRINITY_DN12549_c0_g1:288	si_a329	TRINITY_DN12549_c0_g1	278	296	288	-29.60	-19.30	0.652027027027027	11	2-9,295-288;12-21,287-278	1-1,296-296[UP5];10-11,x-x[BULq]	((((((((((--((((((((.&.))))))))..))))))))))	UGGGACGAGG--UGGAGGAGC&AUUUUUUUAUUCCUUGUCCCG	3	0.999999999749183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN12549_c0_g1_288_TPlot.pdf
TRINITY_DN12549_c0_g1:290	si_a781	TRINITY_DN12549_c0_g1	277	299	290	-27.40	-18.30	0.667883211678832	9	1-3,299-297;5-16,295-284;17-21,281-277	4-4,296-296[SIL];x-x,283-282[BULt]	(((((..((((((((((((.(((&))).))))))))))))--)))))	GUGGGACGAGGUGGAGGAGCUGA&UCAACUCUUCUAUUUU--UCUAU	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN12549_c0_g1_290_TPlot.pdf
TRINITY_DN12549_c0_g1:291	si_a780	TRINITY_DN12549_c0_g1	279	300	291	-27.30	-18.30	0.67032967032967	8.5	1-4,300-297;6-17,295-284;18-20,282-280	5-5,296-296[SIL];x-x,283-283[BULt];21-21,279-279[UP3]	.(((.((((((((((((.((((&)))).))))))))))))-))).	GGGACGAGGUGGAGGAGCUGAG&UUCAACUCUUCUAUUUU-UCUA	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN12549_c0_g1_291_TPlot.pdf
TRINITY_DN12549_c0_g1:292	si_a779	TRINITY_DN12549_c0_g1	280	301	292	-27.00	-17.90	0.662962962962963	8.5	2-5,300-297;7-18,295-284;19-21,282-280	1-1,301-301[UP5];6-6,296-296[SIL];x-x,283-283[BULt]	(((.((((((((((((.((((.&.)))).))))))))))))-)))	GGACGAGGUGGAGGAGCUGAGC&AUUCAACUCUUCUAUUUU-UCU	4	0.999999585983343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN12549_c0_g1_292_TPlot.pdf
TRINITY_DN12549_c0_g1:294	si_a540	TRINITY_DN12549_c0_g1	284	303	294	-34.00	-22.30	0.655882352941176	8.5	1-3,303-301;5-11,299-293;14-21,291-284	4-4,300-300[SIL];12-13,292-292[AILq]	((((((((.-(((((((.(((&))).)))))))..))))))))	GAGGUGGAG-GAGCUGAGCGC&GCGAUCGGUUCAAUCUAUUUC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a540_TRINITY_DN12549_c0_g1_294_TPlot.pdf
TRINITY_DN12568_c0_g1:1382	si_a69	TRINITY_DN12568_c0_g1	1365	1391	1382	-24.00	-16.30	0.679166666666667	16	2-11,1390-1381;12-19,1374-1367	1-1,1391-1391[UP5];x-x,1380-1375[BULt];20-21,1366-1365[UP3]	..((((((((......((((((((((.&.))))))))))------))))))))..	AGGAAAAACAUGAAACAUUUGAGAGAU&UUCUUUCAAAU------UGUUUUUCAU	4	0.999999998256872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN12568_c0_g1_1382_TPlot.pdf
TRINITY_DN1256_c0_g1:612	si_a752	TRINITY_DN1256_c0_g1	601	621	612	-34.80	-23.80	0.683908045977012	8	1-4,621-618;7-18,615-604	5-6,617-616[SIL];19-21,603-601[UP3]	...((((((((((((..((((&))))..))))))))))))...	AUUAUCCAGAGGAGGAACAUG&CAUGAACCUCCUUUGGGUUUU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN1256_c0_g1_612_TPlot.pdf
TRINITY_DN1256_c0_g1:789	si_s447	TRINITY_DN1256_c0_g1	779	798	789	-21.10	-14.60	0.691943127962085	5	1-13,798-786;15-18,785-782	14-14,x-x[BULq];19-21,781-779[UP3]	...((((-(((((((((((((&))))))))))))).))))...	AACAUUG-UGUUAUAUAUGAU&AUUAUAUAUAACAACAAUUAU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN1256_c0_g1_789_TPlot.pdf
TRINITY_DN1256_c0_g1:790	si_s446	TRINITY_DN1256_c0_g1	780	799	790	-21.30	-15.10	0.708920187793427	4.5	1-14,799-786;16-19,785-782	15-15,x-x[BULq];20-21,781-780[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	ACAUUG-UGUUAUAUAUGAUG&UAUUAUAUAUAACAACAAUUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN1256_c0_g1_790_TPlot.pdf
TRINITY_DN1256_c0_g1:792	si_s444	TRINITY_DN1256_c0_g1	782	801	792	-22.80	-15.10	0.662280701754386	6	3-16,799-786;18-21,785-782	1-2,801-800[UP5];17-17,x-x[BULq]	((((-((((((((((((((..&..)))))))))))))).))))	AUUG-UGUUAUAUAUGAUGAU&CAUAUUAUAUAUAACAACAAU	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN1256_c0_g1_792_TPlot.pdf
TRINITY_DN1256_c0_g1:796	si_a455	TRINITY_DN1256_c0_g1	785	805	796	-21.10	-13.90	0.658767772511848	12	5-21,801-785	1-4,805-802[UP5]	(((((((((((((((((....&....)))))))))))))))))	GUGUUAUAUAUGAUGAUUGAU&AAUUGUUGUUAUAUAUAAUAU	4	0.999999995206999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN1256_c0_g1_796_TPlot.pdf
TRINITY_DN12572_c0_g1:835	si_s367	TRINITY_DN12572_c0_g1	824	844	835	-39.40	-26.40	0.67005076142132	7	2-5,843-840;7-14,838-831;16-19,829-826	1-1,844-844[UP5];6-6,839-839[SIL];15-15,830-830[SIL];20-21,825-824[UP3]	..((((.((((((((.((((.&.)))).)))))))).))))..	GUCGCGCGCGAUCGGAUCGAG&AUUGAACCGAUCGCUCGCGUG	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN12572_c0_g1_835_TPlot.pdf
TRINITY_DN12572_c0_g1:837	si_s538	TRINITY_DN12572_c0_g1	826	846	837	-28.00	-20.50	0.732142857142857	9	1-14,846-833	15-21,832-826[UP3]	.......((((((((((((((&)))))))))))))).......	CGCGCGCGAUCGGAUCGAGAA&UUUUUGAUCCGAUCAAAAUAG	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN12572_c0_g1_837_TPlot.pdf
TRINITY_DN12572_c0_g1:841	si_s534	TRINITY_DN12572_c0_g1	830	850	841	-28.80	-21.60	0.75	10	4-18,847-833	1-3,850-848[UP5];19-21,832-830[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGCGAUCGGAUCGAGAAUUCC&AUCAUUUUUGAUCCGAUCAAA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN12572_c0_g1_841_TPlot.pdf
TRINITY_DN12573_c0_g1:996	si_s67	TRINITY_DN12573_c0_g1	985	1006	996	-25.60	-16.92	0.6609375	10.5	1-2,1006-1005;6-21,1000-985	3-5,1004-1001[AILt]	((((((((((((((((....((&))-...))))))))))))))))	GAGAAAAAAGAUAGAGACGAGC&GC-AACUUCUAUUUUUUUUCUU	3	0.999999999999217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN12573_c0_g1_996_TPlot.pdf
TRINITY_DN12579_c0_g1:788	si_a470	TRINITY_DN12579_c0_g1	777	797	788	-21.30	-14.20	0.666666666666667	12	6-20,792-778	1-5,797-793[UP5];21-21,777-777[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAUAAUAGUAGUUACAAAUUC&UAAUAUGUAAUUAUUGUUAUA	4	0.999997117861142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN12579_c0_g1_788_TPlot.pdf
TRINITY_DN12579_c0_g1:95	si_a867	TRINITY_DN12579_c0_g1	84	104	95	-24.10	-15.68	0.650622406639004	8.5	1-7,104-98;11-21,94-84	8-10,97-95[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	GCAACUAGAUUACAAGUAAUU&AAUUAUUAAAGAUUUAGUUGC	2	0.993689766352297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN12579_c0_g1_95_TPlot.pdf
TRINITY_DN1258_c0_g1:203	si_a406	TRINITY_DN1258_c0_g1	189	212	203	-19.80	-13.10	0.661616161616162	11.5	1-10,212-203;11-18,199-192	x-x,202-200[BULt];19-21,191-189[UP3]	...((((((((...((((((((((&))))))))))---))))))))...	GAAGAAUAUAGUUCACAAAACAGU&AUUGUUUUGU---UUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1258_c0_g1_203_TPlot.pdf
TRINITY_DN1258_c0_g1:486	si_a487	TRINITY_DN1258_c0_g1	475	495	486	-24.80	-17.00	0.685483870967742	7.5	3-8,493-488;10-15,486-481;17-21,479-475	1-2,495-494[UP5];9-9,487-487[SIL];16-16,480-480[SIL]	(((((.((((((.((((((..&..)))))).)))))).)))))	GAAAAGGACAUAAUCUGUAAA&UAUAUAGAAUAUGUCGUUUUU	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN1258_c0_g1_486_TPlot.pdf
TRINITY_DN1259_c0_g1:1352	si_a142	TRINITY_DN1259_c0_g1	1341	1361	1352	-23.50	-16.10	0.685106382978724	16	7-19,1355-1343	1-6,1361-1356[UP5];20-21,1342-1341[UP3]	..(((((((((((((......&......)))))))))))))..	CAGGGACGACAGCGAGGAGGA&AAUUAAUCGUUGUUGUUUUAA	2	0.999993766928481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1259_c0_g1_1352_TPlot.pdf
TRINITY_DN125_c0_g1:2161	si_s1	TRINITY_DN125_c0_g1	2149	2170	2161	-18.70	-12.50	0.668449197860963	5	2-15,2169-2156;16-19,2154-2151	1-1,2170-2170[UP5];x-x,2155-2155[BULt];20-21,2150-2149[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	UUAUAAUUAAGUAAUAUAAAGU&UUUUUAUAUUACUUA-UUAUUA	2	0.999998510318831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN125_c0_g1_2161_TPlot.pdf
TRINITY_DN125_c0_g1:422	si_a108	TRINITY_DN125_c0_g1	410	431	422	-28.50	-19.30	0.67719298245614	9	3-3,429-429;5-12,427-420;13-21,418-410	1-2,431-430[UP5];4-4,428-428[SIL];x-x,419-419[BULt]	(((((((((.((((((((.(..&..).))))))))-)))))))))	GGCAAGCUCAGUGUUUUACCGC&AAGAUAAAAUAC-GAGCUUGUU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN125_c0_g1_422_TPlot.pdf
TRINITY_DN12603_c0_g1:128	si_s72	TRINITY_DN12603_c0_g1	117	137	128	-24.10	-16.60	0.688796680497925	6.5	1-4,137-134;6-8,132-130;10-21,128-117	5-5,133-133[SIL];9-9,129-129[SIL]	((((((((((((.(((.((((&)))).))).))))))))))))	AGGGAAAGAAGACAAAAAGGA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN12603_c0_g1_128_TPlot.pdf
TRINITY_DN12603_c0_g1:383	si_a405	TRINITY_DN12603_c0_g1	372	392	383	-19.80	-15.20	0.767676767676768	7	2-9,391-384;11-19,382-374	1-1,392-392[UP5];10-10,383-383[SIL];20-21,373-372[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AGGAGUAUAAGGAAAACAAUA&AAUUGUUUUGUUUAUAUUUAA	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN12603_c0_g1_383_TPlot.pdf
TRINITY_DN12603_c0_g1:384	si_a404	TRINITY_DN12603_c0_g1	373	393	384	-21.70	-15.20	0.700460829493088	8	3-10,391-384;12-20,382-374	1-2,393-392[UP5];11-11,383-383[SIL];21-21,373-373[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	GGAGUAUAAGGAAAACAAUAA&GAAUUGUUUUGUUUAUAUUUA	0	0.321744010367627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN12603_c0_g1_384_TPlot.pdf
TRINITY_DN12603_c0_g1:492	si_s77	TRINITY_DN12603_c0_g1	481	501	492	-25.50	-17.30	0.67843137254902	4	1-12,501-490;15-21,487-481	13-14,489-488[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAAAAGAAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN12603_c0_g1_492_TPlot.pdf
TRINITY_DN12603_c0_g1:501	si_s68	TRINITY_DN12603_c0_g1	490	511	501	-23.10	-15.90	0.688311688311688	7	1-2,511-510;4-8,508-504;10-21,501-490	3-3,509-509[SIL];9-9,503-502[AILt]	((((((((((((..(((((.((&)).)))))-.))))))))))))	GAAGAAGAAAAAGAAGAAGAUG&CAACUUCU-AUUUUUUUUCUUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12603_c0_g1_501_TPlot.pdf
TRINITY_DN12604_c0_g1:1302	si_s237	TRINITY_DN12604_c0_g1	1291	1311	1302	-31.40	-22.30	0.710191082802548	9.5	4-10,1308-1302;12-18,1300-1294;20-21,1292-1291	1-3,1311-1309[UP5];11-11,1301-1301[SIL];19-19,1293-1293[SIL]	((.(((((((.(((((((...&...))))))).))))))).))	GAUGUGCCUAAUGGUUCCAGG&UAAGGAAUCAAUAGGCAUUUC	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s237_TRINITY_DN12604_c0_g1_1302_TPlot.pdf
TRINITY_DN1260_c1_g1:1097	si_a784	TRINITY_DN1260_c1_g1	1086	1106	1097	-24.70	-19.20	0.777327935222672	7	2-16,1105-1091	1-1,1106-1106[UP5];17-21,1090-1086[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUAGAGAAAAAUAGAAGGGA&ACUCUUCUAUUUUUCUAUUUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g1_1097_TPlot.pdf
TRINITY_DN1260_c1_g1:1098	si_a783	TRINITY_DN1260_c1_g1	1087	1107	1098	-24.70	-19.20	0.777327935222672	8	3-17,1105-1091	1-2,1107-1106[UP5];18-21,1090-1087[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUAGAGAAAAAUAGAAGGGAG&AACUCUUCUAUUUUUCUAUUU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1260_c1_g1_1098_TPlot.pdf
TRINITY_DN1260_c1_g1:1099	si_a782	TRINITY_DN1260_c1_g1	1088	1108	1099	-26.40	-19.20	0.727272727272727	9	4-18,1105-1091	1-3,1108-1106[UP5];19-21,1090-1088[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAGAGAAAAAUAGAAGGGAGA&CAACUCUUCUAUUUUUCUAUU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1260_c1_g1_1099_TPlot.pdf
TRINITY_DN1260_c1_g1:1418	si_s806	TRINITY_DN1260_c1_g1	1407	1427	1418	-28.60	-19.50	0.681818181818182	7.5	1-3,1427-1425;5-10,1423-1418;13-21,1415-1407	4-4,1424-1424[SIL];11-12,1417-1416[SIL]	(((((((((..((((((.(((&))).))))))..)))))))))	AAGAAAGGGGAAUGAAGUUAA&UUAUCUUCGUUACCUUUUCUU	4	0.999999988356151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1260_c1_g1_1418_TPlot.pdf
TRINITY_DN1260_c1_g1:1467	si_s71	TRINITY_DN1260_c1_g1	1456	1476	1467	-25.70	-20.20	0.785992217898833	8.5	2-11,1475-1466;13-21,1464-1456	1-1,1476-1476[UP5];12-12,1465-1465[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	GGGAAGGAGUGGAGAUGGAAU&CUUCUAUUUUUUUUCUUUCCU	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g1_1467_TPlot.pdf
TRINITY_DN1260_c1_g1:1483	si_a784	TRINITY_DN1260_c1_g1	1472	1501	1483	-24.70	-16.70	0.676113360323887	21.5	2-9,1500-1493;10-21,1483-1472	1-1,1501-1501[UP5];x-x,1492-1484[BULt]	((((((((((((.........((((((((.&.))))))))---------))))))))))))	GGAAUAGAGAAACGGAAAUACUGGAAGAGC&ACUCUUCUA---------UUUUUCUAUUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g1_1483_TPlot.pdf
TRINITY_DN1260_c1_g1:1595	si_a785	TRINITY_DN1260_c1_g1	1584	1604	1595	-25.90	-18.28	0.705791505791506	6.5	1-13,1604-1592;17-21,1588-1584	14-16,1591-1589[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	GAAGAGAAAGAGAUGGAAGAG&CUCUUCUAUUUUUCUAUUUUC	4	0.999999996409959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1260_c1_g1_1595_TPlot.pdf
TRINITY_DN1260_c1_g1:1596	si_s68	TRINITY_DN1260_c1_g1	1584	1605	1596	-23.10	-16.20	0.701298701298701	9.5	4-15,1602-1591;16-21,1589-1584	1-3,1605-1603[UP5];x-x,1590-1590[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAAGAGAAAGAGAUGGAAGAGA&CAACUUCUAUUUUUU-UUCUUU	2	0.999999751840431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1260_c1_g1_1596_TPlot.pdf
TRINITY_DN1260_c1_g1:1630	si_s74	TRINITY_DN1260_c1_g1	1619	1639	1630	-25.00	-18.50	0.74	5.5	2-18,1638-1622	1-1,1639-1639[UP5];19-21,1621-1619[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AGUGGGAGGGAAAAAAAAUAA&CUAUUUUUUUUCUUUCCUUUC	4	0.999999839810467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1260_c1_g1_1630_TPlot.pdf
TRINITY_DN1260_c1_g1:2340	si_a642	TRINITY_DN1260_c1_g1	2330	2349	2340	-25.90	-17.20	0.664092664092664	11	5-11,2345-2339;14-21,2337-2330	1-4,2349-2346[UP5];12-13,2338-2338[AILq]	((((((((.-(((((((....&....)))))))..))))))))	CCGAUAUAA-ACUCAGAUCAU&UUUUUUUGAGUAAUAUAUCGG	2	0.987487715898913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN1260_c1_g1_2340_TPlot.pdf
TRINITY_DN1260_c1_g1:2507	si_a323	TRINITY_DN1260_c1_g1	2495	2516	2507	-26.80	-17.90	0.667910447761194	5	1-3,2516-2514;5-14,2512-2503;16-21,2500-2495	4-4,2513-2513[SIL];15-15,2502-2501[AILt]	((((((..((((((((((.(((&))).))))))))))-.))))))	AAGGAAAAAAAGAAAUCAGGGA&UCCAUGAUUUUUUU-AUUCCUU	2	0.99989487553627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1260_c1_g1_2507_TPlot.pdf
TRINITY_DN1260_c1_g1:2917	si_s77	TRINITY_DN1260_c1_g1	2905	2927	2917	-25.50	-18.60	0.729411764705882	6.5	1-6,2927-2922;7-16,2920-2911;17-21,2909-2905	x-x,2921-2921[BULt];x-x,2910-2910[BULt]	(((((.((((((((((.((((((&))))))-))))))))))-)))))	GGAGAUGGGGAAAGAAUAAGAGA&UUUUUU-UUCUUUCCUU-UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1260_c1_g1_2917_TPlot.pdf
TRINITY_DN1260_c1_g1:2918	si_s76	TRINITY_DN1260_c1_g1	2906	2928	2918	-23.60	-16.30	0.690677966101695	7.5	2-7,2927-2922;8-17,2920-2911;18-21,2909-2906	1-1,2928-2928[UP5];x-x,2921-2921[BULt];x-x,2910-2910[BULt]	((((.((((((((((.((((((.&.))))))-))))))))))-))))	GAGAUGGGGAAAGAAUAAGAGAA&AUUUUUU-UUCUUUCCUU-UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1260_c1_g1_2918_TPlot.pdf
TRINITY_DN1260_c1_g1:2920	si_s74	TRINITY_DN1260_c1_g1	2908	2934	2920	-25.00	-16.40	0.656	16	1-9,2934-2926;10-19,2920-2911;20-21,2909-2908	x-x,2925-2921[BULt];x-x,2910-2910[BULt]	((.((((((((((.....(((((((((&)))))))))-----))))))))))-))	GAUGGGGAAAGAAUAAGAGAAAGGUGG&CUAUUUUUU-----UUCUUUCCUU-UC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1260_c1_g1_2920_TPlot.pdf
TRINITY_DN1260_c1_g1:2928	si_s71	TRINITY_DN1260_c1_g1	2912	2937	2928	-25.70	-18.60	0.723735408560311	15.5	2-12,2936-2926;13-21,2920-2912	1-1,2937-2937[UP5];x-x,2925-2921[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	GGGAAAGAAUAAGAGAAAGGUGGAAA&CUUCUAUUUUUU-----UUCUUUCCU	3	0.999999999886112	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g1_2928_TPlot.pdf
TRINITY_DN1260_c1_g1:2929	si_a320	TRINITY_DN1260_c1_g1	2918	2938	2929	-24.40	-16.20	0.663934426229508	11	4-8,2935-2931;11-21,2928-2918	1-3,2938-2936[UP5];9-10,2930-2929[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GAAUAAGAGAAAGGUGGAAAG&UUAUCCAUGAUUUUUUUAUUC	2	0.999960673473756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1260_c1_g1_2929_TPlot.pdf
TRINITY_DN1260_c1_g1:2931	si_a784	TRINITY_DN1260_c1_g1	2920	2941	2931	-24.70	-17.00	0.688259109311741	10	1-6,2941-2936;7-16,2934-2925	x-x,2935-2935[BULt];17-21,2924-2920[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	AUAAGAGAAAGGUGGAAAGAGU&ACUCUU-CUAUUUUUCUAUUUU	2	0.999999861744563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g1_2931_TPlot.pdf
TRINITY_DN1260_c1_g1:3000	si_s84	TRINITY_DN1260_c1_g1	2976	3009	3000	-32.30	-22.30	0.690402476780186	29	1-11,3009-2999;12-20,2985-2977	x-x,2998-2986[BULt];21-21,2976-2976[UP3]	.(((((((((.............(((((((((((&)))))))))))-------------))))))))).	GGAAGAAGAAAAAGAAGAUAUGCGAGAGGAAGGA&UCUUUCCUUUC-------------UUCUUCUUCG	2	0.999999977253498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1260_c1_g1_3000_TPlot.pdf
TRINITY_DN1260_c1_g1:3002	si_s82	TRINITY_DN1260_c1_g1	2987	3011	3002	-28.90	-21.18	0.732871972318339	8	2-13,3010-2999;15-21,2993-2987	1-1,3011-3011[UP5];14-14,2998-2994[AILt]	(((((((.....((((((((((((.&.))))))))))))----.)))))))	AAGAAGAUAUGCGAGAGGAAGGAAU&UUUCUUUCCUUUC----UUCUUCUU	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1260_c1_g1_3002_TPlot.pdf
TRINITY_DN1260_c1_g1:3003	si_s81	TRINITY_DN1260_c1_g1	2988	3012	3003	-28.90	-20.28	0.701730103806228	10	3-14,3010-2999;16-21,2993-2988	1-2,3012-3011[UP5];15-15,2998-2994[AILt]	((((((.....((((((((((((..&..))))))))))))----.))))))	AGAAGAUAUGCGAGAGGAAGGAAUU&UUUUCUUUCCUUUC----UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1260_c1_g1_3003_TPlot.pdf
TRINITY_DN1260_c1_g1:3004	si_s80	TRINITY_DN1260_c1_g1	2989	3013	3004	-28.20	-18.98	0.673049645390071	11.5	4-15,3010-2999;17-21,2993-2989	1-3,3013-3011[UP5];16-16,2998-2994[AILt]	(((((.....((((((((((((...&...))))))))))))----.)))))	GAAGAUAUGCGAGAGGAAGGAAUUG&UUUUUCUUUCCUUUC----UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1260_c1_g1_3004_TPlot.pdf
TRINITY_DN1260_c1_g1:3005	si_s79	TRINITY_DN1260_c1_g1	2987	3014	3005	-26.20	-17.40	0.66412213740458	15.5	5-14,3010-3001;15-21,2993-2987	1-4,3014-3011[UP5];x-x,3000-2994[BULt]	(((((((.......((((((((((....&....))))))))))-------)))))))	AAGAAGAUAUGCGAGAGGAAGGAAUUGA&UUUUUUCUUUCCUU-------UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1260_c1_g1_3005_TPlot.pdf
TRINITY_DN1260_c1_g1:3006	si_s86	TRINITY_DN1260_c1_g1	2996	3019	3006	-32.90	-21.70	0.659574468085106	13	1-7,3019-3013;8-16,3008-3000;18-20,2999-2997	x-x,3012-3009[BULt];17-17,x-x[BULq];21-21,2996-2996[UP3]	.(((-(((((((((....(((((((&)))))))----))))))))).))).	UGCG-AGAGGAAGGAAUUGAGGAAG&UUUCCUU----UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1260_c1_g1_3006_TPlot.pdf
TRINITY_DN1260_c1_g1:3013	si_s74	TRINITY_DN1260_c1_g1	2999	3022	3013	-25.00	-19.30	0.772	12	2-10,3021-3013;11-21,3009-2999	1-1,3022-3022[UP5];x-x,3012-3010[BULt]	(((((((((((...(((((((((.&.)))))))))---)))))))))))	GAGAGGAAGGAAUUGAGGAAGUAA&CUAUUUUUUU---UCUUUCCUUUC	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1260_c1_g1_3013_TPlot.pdf
TRINITY_DN1260_c1_g1:4253	si_s75	TRINITY_DN1260_c1_g1	4242	4262	4253	-24.00	-17.10	0.7125	11.5	6-17,4257-4246;19-21,4244-4242	1-5,4262-4258[UP5];18-18,4245-4245[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	AGAUGGGAAAGAAGAAUAUUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1260_c1_g1_4253_TPlot.pdf
TRINITY_DN1260_c1_g1:4448	si_s71	TRINITY_DN1260_c1_g1	4437	4456	4448	-25.70	-18.40	0.715953307392996	11.5	1-9,4456-4448;12-20,4446-4438	10-11,4447-4447[AILq];21-21,4437-4437[UP3]	.(((((((((.-(((((((((&)))))))))..))))))))).	UGGAGGGGAGU-GGAUGGGAG&CUUCUAUUUUUUUUCUUUCCU	4	0.999999999999009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g1_4448_TPlot.pdf
TRINITY_DN1260_c1_g1:4455	si_s77	TRINITY_DN1260_c1_g1	4439	4464	4455	-25.50	-17.90	0.701960784313725	9.5	1-13,4464-4452;14-21,4446-4439	x-x,4451-4447[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	GAGGGGAGUGGAUGGGAGAAAAAGAA&UUUUUUUUCUUUC-----CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1260_c1_g1_4455_TPlot.pdf
TRINITY_DN1260_c1_g1:4457	si_a785	TRINITY_DN1260_c1_g1	4446	4467	4457	-25.90	-17.50	0.675675675675676	8	1-7,4467-4461;9-19,4458-4448;21-21,4446-4446	8-8,4460-4459[AILt];20-20,4447-4447[SIL]	(.(((((((((((..(((((((&)))))))-.))))))))))).)	GUGGAUGGGAGAAAAAGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	2	0.999999997487086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1260_c1_g1_4457_TPlot.pdf
TRINITY_DN1260_c1_g1:4458	si_a784	TRINITY_DN1260_c1_g1	4447	4468	4458	-24.70	-17.40	0.704453441295547	9	2-8,4467-4461;10-20,4458-4448	1-1,4468-4468[UP5];9-9,4460-4459[AILt];21-21,4447-4447[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	UGGAUGGGAGAAAAAGAAGAGG&ACUCUUCU-AUUUUUCUAUUUU	2	0.999987944570732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g1_4458_TPlot.pdf
TRINITY_DN1260_c1_g1:4459	si_a783	TRINITY_DN1260_c1_g1	4448	4469	4459	-24.70	-17.40	0.704453441295547	9.5	3-9,4467-4461;11-21,4458-4448	1-2,4469-4468[UP5];10-10,4460-4459[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GGAUGGGAGAAAAAGAAGAGGA&AACUCUUCU-AUUUUUCUAUUU	2	0.999939956558842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1260_c1_g1_4459_TPlot.pdf
TRINITY_DN1260_c1_g1:4463	si_s69	TRINITY_DN1260_c1_g1	4452	4473	4463	-23.40	-17.40	0.743589743589744	10	3-7,4471-4467;9-21,4464-4452	1-2,4473-4472[UP5];8-8,4466-4465[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGGAGAAAAAGAAGAGGAAGGC&AACUUCU-AUUUUUUUUCUUUC	4	0.999999997197659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1260_c1_g1_4463_TPlot.pdf
TRINITY_DN1260_c1_g1:4464	si_s68	TRINITY_DN1260_c1_g1	4453	4474	4464	-23.10	-15.30	0.662337662337662	12	4-8,4471-4467;10-21,4464-4453	1-3,4474-4472[UP5];9-9,4466-4465[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	GGAGAAAAAGAAGAGGAAGGCC&CAACUUCU-AUUUUUUUUCUUU	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1260_c1_g1_4464_TPlot.pdf
TRINITY_DN1260_c1_g1:4472	si_s81	TRINITY_DN1260_c1_g1	4461	4485	4472	-28.90	-21.50	0.743944636678201	12.5	2-9,4484-4477;10-21,4472-4461	1-1,4485-4485[UP5];x-x,4476-4473[BULt]	((((((((((((....((((((((.&.))))))))----))))))))))))	AGAAGAGGAAGGCCAAGGAAGAGAU&UUUUCUUUC----CUUUCUUCUUCU	3	0.999999999490587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1260_c1_g1_4472_TPlot.pdf
TRINITY_DN1260_c1_g1:4473	si_s80	TRINITY_DN1260_c1_g1	4462	4482	4473	-28.20	-20.40	0.723404255319149	7.5	1-8,4482-4475;11-21,4472-4462	9-10,4474-4473[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	GAAGAGGAAGGCCAAGGAAGA&UUUUUCUUUCCUUUCUUCUUC	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1260_c1_g1_4473_TPlot.pdf
TRINITY_DN1260_c1_g1:4478	si_s74	TRINITY_DN1260_c1_g1	4463	4487	4478	-25.00	-17.10	0.684	15	1-11,4487-4477;12-20,4472-4464	x-x,4476-4473[BULt];21-21,4463-4463[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AAGAGGAAGGCCAAGGAAGAGAUGG&CUAUUUUUUUU----CUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1260_c1_g1_4478_TPlot.pdf
TRINITY_DN1260_c1_g1:4481	si_s71	TRINITY_DN1260_c1_g1	4466	4490	4481	-25.70	-20.60	0.801556420233463	9.5	1-14,4490-4477;15-21,4472-4466	x-x,4476-4473[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	AGGAAGGCCAAGGAAGAGAUGGAGG&CUUCUAUUUUUUUU----CUUUCCU	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g1_4481_TPlot.pdf
TRINITY_DN1260_c1_g1:4482	si_s70	TRINITY_DN1260_c1_g1	4467	4491	4482	-25.80	-19.50	0.755813953488372	10.5	2-15,4490-4477;16-21,4472-4467	1-1,4491-4491[UP5];x-x,4476-4473[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	GGAAGGCCAAGGAAGAGAUGGAGGG&ACUUCUAUUUUUUUU----CUUUCC	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1260_c1_g1_4482_TPlot.pdf
TRINITY_DN1260_c1_g1:4483	si_a500	TRINITY_DN1260_c1_g1	4472	4497	4483	-34.40	-22.92	0.666279069767442	17	1-9,4497-4489;11-20,4482-4473	10-10,4488-4483[AILt];21-21,4472-4472[UP3]	.((((((((((......(((((((((&)))))))))-----.)))))))))).	GCCAAGGAAGAGAUGGAGGGAGGCGA&UCGUUUUUC-----GUCUUCCUUGGA	3	0.999999984721091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1260_c1_g1_4483_TPlot.pdf
TRINITY_DN1260_c1_g1:4488	si_a544	TRINITY_DN1260_c1_g1	4477	4497	4488	-28.90	-21.20	0.73356401384083	10	1-3,4497-4495;5-7,4493-4491;10-20,4488-4478	4-4,4494-4494[SIL];8-9,4490-4489[SIL];21-21,4477-4477[UP3]	.(((((((((((..(((.(((&))).)))..))))))))))).	GGAAGAGAUGGAGGGAGGCGA&UCGGUUCAAUCUAUUUCUUUA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN1260_c1_g1_4488_TPlot.pdf
TRINITY_DN1260_c1_g1:4490	si_a542	TRINITY_DN1260_c1_g1	4479	4499	4490	-30.70	-21.10	0.687296416938111	9	2-5,4498-4495;7-9,4493-4491;12-21,4488-4479	1-1,4499-4499[UP5];6-6,4494-4494[SIL];10-11,4490-4489[SIL]	((((((((((..(((.((((.&.)))).)))..))))))))))	AAGAGAUGGAGGGAGGCGAUA&GAUCGGUUCAAUCUAUUUCUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN1260_c1_g1_4490_TPlot.pdf
TRINITY_DN1260_c1_g1:684	si_s76	TRINITY_DN1260_c1_g1	671	693	684	-23.60	-15.40	0.652542372881356	10	1-5,693-689;8-16,686-678;17-20,675-672	6-7,688-687[SIL];x-x,677-676[BULt];21-21,671-671[UP3]	.((((..(((((((((..(((((&)))))..)))))))))--)))).	UAGAAAUAGGAGAGGAUUAAAGU&AUUUUUUUUCUUUCCU--UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1260_c1_g1_684_TPlot.pdf
TRINITY_DN1260_c1_g1:685	si_s75	TRINITY_DN1260_c1_g1	672	694	685	-24.00	-16.70	0.695833333333333	8.5	1-6,694-689;9-17,686-678;18-21,675-672	7-8,688-687[SIL];x-x,677-676[BULt]	((((..(((((((((..((((((&))))))..)))))))))--))))	AGAAAUAGGAGAGGAUUAAAGUA&UAUUUUUUUUCUUUCCU--UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1260_c1_g1_685_TPlot.pdf
TRINITY_DN1260_c1_g1:796	si_s83	TRINITY_DN1260_c1_g1	784	805	796	-30.90	-20.70	0.669902912621359	4.5	1-13,805-793;14-16,791-789;19-21,786-784	x-x,792-792[BULt];17-18,788-787[SIL]	(((..(((.(((((((((((((&)))))))))))))-)))..)))	GAACUAGAGGGAAAGGAAAGGA&UUCUUUCCUUUCU-UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1260_c1_g1_796_TPlot.pdf
TRINITY_DN1260_c1_g1:797	si_s82	TRINITY_DN1260_c1_g1	788	806	797	-28.90	-19.70	0.681660899653979	5	1-13,806-794;16-20,793-789	14-15,x-x[BULq];21-21,788-788[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	UAGAGG--GAAAGGAAAGGAG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1260_c1_g1_797_TPlot.pdf
TRINITY_DN1260_c1_g1:798	si_s81	TRINITY_DN1260_c1_g1	789	807	798	-28.90	-19.70	0.681660899653979	5.5	2-14,806-794;17-21,793-789	1-1,807-807[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	AGAGG--GAAAGGAAAGGAGU&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1260_c1_g1_798_TPlot.pdf
TRINITY_DN1260_c1_g1:930	si_a69	TRINITY_DN1260_c1_g1	919	948	930	-24.00	-15.70	0.654166666666667	20.5	1-8,948-941;9-21,931-919	x-x,940-932[BULt]	(((((((((((((.........((((((((&))))))))---------)))))))))))))	AUGAAAAAUAGUUUAAAACAACUGAAGGAA&UUCUUUCA---------AAUUGUUUUUCAU	3	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1260_c1_g1_930_TPlot.pdf
TRINITY_DN1260_c1_g1:968	si_a64	TRINITY_DN1260_c1_g1	958	977	968	-29.40	-19.22	0.653741496598639	7	1-12,977-966;17-21,962-958	13-16,965-963[AILq]	(((((...-((((((((((((&))))))))))))....)))))	GAAUAUAG-GGAAGAAGUGAG&CUCGCUUCUUUCAAAUUGUUU	2	0.999925808258036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN1260_c1_g1_968_TPlot.pdf
TRINITY_DN1260_c1_g2:1025	si_s72	TRINITY_DN1260_c1_g2	1014	1035	1025	-24.10	-19.00	0.788381742738589	5.5	2-4,1034-1032;5-20,1030-1015	1-1,1035-1035[UP5];x-x,1031-1031[BULt];21-21,1014-1014[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	UGGGAGGGAAAAAAAAUAAGAU&UUCU-AUUUUUUUUCUUUCCUU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1260_c1_g2_1025_TPlot.pdf
TRINITY_DN1260_c1_g2:1060	si_a328	TRINITY_DN1260_c1_g2	1046	1069	1060	-30.10	-20.00	0.664451827242525	11	2-10,1068-1060;11-14,1056-1053;16-21,1051-1046	1-1,1069-1069[UP5];x-x,1059-1057[BULt];15-15,1052-1052[SIL]	((((((.((((...(((((((((.&.)))))))))---)))).))))))	GGGACAUGGAACGUUAGAGGAAUA&GAUUUUUUUA---UUCCUUGUCCC	3	0.999999559920985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1260_c1_g2_1060_TPlot.pdf
TRINITY_DN1260_c1_g2:1869	si_a642	TRINITY_DN1260_c1_g2	1859	1878	1869	-25.90	-17.20	0.664092664092664	11	5-11,1874-1868;14-21,1866-1859	1-4,1878-1875[UP5];12-13,1867-1867[AILq]	((((((((.-(((((((....&....)))))))..))))))))	CCGAUAUAA-ACUCAGAUCAU&UUUUUUUGAGUAAUAUAUCGG	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN1260_c1_g2_1869_TPlot.pdf
TRINITY_DN1260_c1_g2:189	si_s83	TRINITY_DN1260_c1_g2	177	198	189	-30.90	-20.70	0.669902912621359	4.5	1-13,198-186;14-16,184-182;19-21,179-177	x-x,185-185[BULt];17-18,181-180[SIL]	(((..(((.(((((((((((((&)))))))))))))-)))..)))	GAACUAGAGGGAAAGGAAAGGA&UUCUUUCCUUUCU-UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1260_c1_g2_189_TPlot.pdf
TRINITY_DN1260_c1_g2:190	si_s82	TRINITY_DN1260_c1_g2	181	199	190	-28.90	-19.70	0.681660899653979	5	1-13,199-187;16-20,186-182	14-15,x-x[BULq];21-21,181-181[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	UAGAGG--GAAAGGAAAGGAG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1260_c1_g2_190_TPlot.pdf
TRINITY_DN1260_c1_g2:191	si_s81	TRINITY_DN1260_c1_g2	182	200	191	-28.90	-19.70	0.681660899653979	5.5	2-14,199-187;17-21,186-182	1-1,200-200[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	AGAGG--GAAAGGAAAGGAGU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1260_c1_g2_191_TPlot.pdf
TRINITY_DN1260_c1_g2:195	si_s72	TRINITY_DN1260_c1_g2	184	204	195	-24.10	-19.20	0.796680497925311	9	4-21,201-184	1-3,204-202[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGGAAAGGAAAGGAGUAAAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1260_c1_g2_195_TPlot.pdf
TRINITY_DN1260_c1_g2:200	si_a328	TRINITY_DN1260_c1_g2	185	209	200	-30.10	-19.98	0.663787375415282	6.5	1-16,209-194;18-21,188-185	17-17,193-189[AILt]	((((.....((((((((((((((((&))))))))))))))))----.))))	GGGAAAGGAAAGGAGUAAAAAAAUU&GAUUUUUUUAUUCCUU----GUCCC	4	0.999999807106365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1260_c1_g2_200_TPlot.pdf
TRINITY_DN1260_c1_g2:2036	si_a323	TRINITY_DN1260_c1_g2	2024	2045	2036	-26.80	-17.90	0.667910447761194	5	1-3,2045-2043;5-14,2041-2032;16-21,2029-2024	4-4,2042-2042[SIL];15-15,2031-2030[AILt]	((((((..((((((((((.(((&))).))))))))))-.))))))	AAGGAAAAAAAGAAAUCAGGGA&UCCAUGAUUUUUUU-AUUCCUU	3	0.999999513044085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1260_c1_g2_2036_TPlot.pdf
TRINITY_DN1260_c1_g2:2445	si_s78	TRINITY_DN1260_c1_g2	2433	2454	2445	-26.20	-19.20	0.732824427480916	5.5	1-4,2454-2451;6-15,2449-2440;16-21,2438-2433	5-5,2450-2450[SIL];x-x,2439-2439[BULt]	((((((.((((((((((.((((&)))).))))))))))-))))))	AGGAGAUGGGGAAAGAAUAAGA&UUUUUUUCUUUCCUU-UCUUCU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1260_c1_g2_2445_TPlot.pdf
TRINITY_DN1260_c1_g2:2447	si_s76	TRINITY_DN1260_c1_g2	2435	2457	2447	-23.60	-16.30	0.690677966101695	7.5	2-7,2456-2451;8-17,2449-2440;18-21,2438-2435	1-1,2457-2457[UP5];x-x,2450-2450[BULt];x-x,2439-2439[BULt]	((((.((((((((((.((((((.&.))))))-))))))))))-))))	GAGAUGGGGAAAGAAUAAGAGAA&AUUUUUU-UUCUUUCCUU-UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1260_c1_g2_2447_TPlot.pdf
TRINITY_DN1260_c1_g2:2449	si_s74	TRINITY_DN1260_c1_g2	2437	2463	2449	-25.00	-16.40	0.656	16	1-9,2463-2455;10-19,2449-2440;20-21,2438-2437	x-x,2454-2450[BULt];x-x,2439-2439[BULt]	((.((((((((((.....(((((((((&)))))))))-----))))))))))-))	GAUGGGGAAAGAAUAAGAGAAAGGUGG&CUAUUUUUU-----UUCUUUCCUU-UC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1260_c1_g2_2449_TPlot.pdf
TRINITY_DN1260_c1_g2:2457	si_s71	TRINITY_DN1260_c1_g2	2441	2466	2457	-25.70	-18.60	0.723735408560311	15.5	2-12,2465-2455;13-21,2449-2441	1-1,2466-2466[UP5];x-x,2454-2450[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	GGGAAAGAAUAAGAGAAAGGUGGAAA&CUUCUAUUUUUU-----UUCUUUCCU	4	0.999999999949954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g2_2457_TPlot.pdf
TRINITY_DN1260_c1_g2:2458	si_a320	TRINITY_DN1260_c1_g2	2447	2467	2458	-24.40	-16.20	0.663934426229508	11	4-8,2464-2460;11-21,2457-2447	1-3,2467-2465[UP5];9-10,2459-2458[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GAAUAAGAGAAAGGUGGAAAG&UUAUCCAUGAUUUUUUUAUUC	2	0.999975493323183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1260_c1_g2_2458_TPlot.pdf
TRINITY_DN1260_c1_g2:2460	si_a784	TRINITY_DN1260_c1_g2	2449	2470	2460	-24.70	-17.00	0.688259109311741	10	1-6,2470-2465;7-16,2463-2454	x-x,2464-2464[BULt];17-21,2453-2449[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	AUAAGAGAAAGGUGGAAAGAGU&ACUCUU-CUAUUUUUCUAUUUU	3	0.999999999990558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g2_2460_TPlot.pdf
TRINITY_DN1260_c1_g2:2529	si_s84	TRINITY_DN1260_c1_g2	2505	2538	2529	-32.30	-22.30	0.690402476780186	29	1-11,2538-2528;12-20,2514-2506	x-x,2527-2515[BULt];21-21,2505-2505[UP3]	.(((((((((.............(((((((((((&)))))))))))-------------))))))))).	GGAAGAAGAAAAAGAAGAUAUGCGAGAGGAAGGA&UCUUUCCUUUC-------------UUCUUCUUCG	2	0.999999971185227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1260_c1_g2_2529_TPlot.pdf
TRINITY_DN1260_c1_g2:2535	si_s86	TRINITY_DN1260_c1_g2	2525	2548	2535	-32.90	-21.70	0.659574468085106	13	1-7,2548-2542;8-16,2537-2529;18-20,2528-2526	x-x,2541-2538[BULt];17-17,x-x[BULq];21-21,2525-2525[UP3]	.(((-(((((((((....(((((((&)))))))----))))))))).))).	UGCG-AGAGGAAGGAAUUGAGGAAG&UUUCCUU----UCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1260_c1_g2_2535_TPlot.pdf
TRINITY_DN1260_c1_g2:2542	si_s74	TRINITY_DN1260_c1_g2	2528	2551	2542	-25.00	-19.30	0.772	12	2-10,2550-2542;11-21,2538-2528	1-1,2551-2551[UP5];x-x,2541-2539[BULt]	(((((((((((...(((((((((.&.)))))))))---)))))))))))	GAGAGGAAGGAAUUGAGGAAGUAA&CUAUUUUUUU---UCUUUCCUUUC	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1260_c1_g2_2542_TPlot.pdf
TRINITY_DN1260_c1_g2:2547	si_s71	TRINITY_DN1260_c1_g2	2535	2557	2547	-25.70	-18.30	0.712062256809339	6.5	1-8,2557-2550;9-15,2548-2542;17-21,2539-2535	x-x,2549-2549[BULt];16-16,2541-2540[AILt]	(((((..(((((((.((((((((&))))))))-)))))))-.)))))	AGGAAUUGAGGAAGUAAUAGAAG&CUUCUAUU-UUUUUUC-UUUCCU	4	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g2_2547_TPlot.pdf
TRINITY_DN1260_c1_g2:298	si_s64	TRINITY_DN1260_c1_g2	287	307	298	-24.10	-15.70	0.651452282157676	9.5	4-6,304-302;8-21,300-287	1-3,307-305[UP5];7-7,301-301[SIL]	((((((((((((((.(((...&...))).))))))))))))))	AAAAGAAAUAGAGGAUGUCAA&UUAGCAACUUCUAUUUUUUUU	3	0.999999999999949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1260_c1_g2_298_TPlot.pdf
TRINITY_DN1260_c1_g2:322	si_a70	TRINITY_DN1260_c1_g2	311	340	322	-23.90	-15.90	0.665271966527197	21.5	1-7,340-334;8-21,324-311	x-x,333-325[BULt]	((((((((((((((.........(((((((&)))))))---------))))))))))))))	GAUGAAAAAUAGUUUAAAACAACUGAAGGA&UCUUUCA---------AAUUGUUUUUCAUU	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1260_c1_g2_322_TPlot.pdf
TRINITY_DN1260_c1_g2:323	si_a69	TRINITY_DN1260_c1_g2	312	341	323	-24.00	-15.70	0.654166666666667	20.5	1-8,341-334;9-21,324-312	x-x,333-325[BULt]	(((((((((((((.........((((((((&))))))))---------)))))))))))))	AUGAAAAAUAGUUUAAAACAACUGAAGGAA&UUCUUUCA---------AAUUGUUUUUCAU	3	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1260_c1_g2_323_TPlot.pdf
TRINITY_DN1260_c1_g2:486	si_a788	TRINITY_DN1260_c1_g2	471	495	486	-24.80	-17.76	0.716129032258065	11	1-12,495-484;15-20,477-472	13-14,483-478[AILt];21-21,471-471[UP3]	.((((((......((((((((((((&))))))))))))----..)))))).	AUGGAAAUAAUAGAGAAAAAUAGAA&UUCUAUUUUUCU----AUUUUCCAA	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1260_c1_g2_486_TPlot.pdf
TRINITY_DN1260_c1_g2:490	si_a784	TRINITY_DN1260_c1_g2	479	499	490	-24.70	-19.20	0.777327935222672	7	2-16,498-484	1-1,499-499[UP5];17-21,483-479[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUAGAGAAAAAUAGAAGGGA&ACUCUUCUAUUUUUCUAUUUU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g2_490_TPlot.pdf
TRINITY_DN1260_c1_g2:494	si_a780	TRINITY_DN1260_c1_g2	483	503	494	-27.30	-19.20	0.703296703296703	11	6-20,498-484	1-5,503-499[UP5];21-21,483-483[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAGAAAAAUAGAAGGGAGAAU&UUCAACUCUUCUAUUUUUCUA	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1260_c1_g2_494_TPlot.pdf
TRINITY_DN1260_c1_g2:606	si_a759	TRINITY_DN1260_c1_g2	597	615	606	-32.60	-21.60	0.662576687116564	5	2-14,614-602;17-20,601-598	1-1,615-615[UP5];15-16,x-x[BULq];21-21,597-597[UP3]	.((((--(((((((((((((.&.)))))))))))))..)))).	GCAGU--GAAACCCAAAGGAA&CUCCUUUGGGUUUUUGAUUGA	3	0.999999353490657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN1260_c1_g2_606_TPlot.pdf
TRINITY_DN1260_c1_g2:77	si_s76	TRINITY_DN1260_c1_g2	64	86	77	-23.60	-15.40	0.652542372881356	10	1-5,86-82;8-16,79-71;17-20,68-65	6-7,81-80[SIL];x-x,70-69[BULt];21-21,64-64[UP3]	.((((..(((((((((..(((((&)))))..)))))))))--)))).	UAGAAAUAGGAGAGGAUUAAAGU&AUUUUUUUUCUUUCCU--UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1260_c1_g2_77_TPlot.pdf
TRINITY_DN1260_c1_g2:811	si_s806	TRINITY_DN1260_c1_g2	800	820	811	-28.60	-19.50	0.681818181818182	7.5	1-3,820-818;5-10,816-811;13-21,808-800	4-4,817-817[SIL];11-12,810-809[SIL]	(((((((((..((((((.(((&))).))))))..)))))))))	AAGAAAGGGGAAUGAAGUUAA&UUAUCUUCGUUACCUUUUCUU	4	0.999999982037834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1260_c1_g2_811_TPlot.pdf
TRINITY_DN1260_c1_g2:861	si_s70	TRINITY_DN1260_c1_g2	850	870	861	-25.80	-19.10	0.74031007751938	9	3-12,868-859;14-21,857-850	1-2,870-869[UP5];13-13,858-858[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GGAAGGAGUGGAGAUGGAAUA&ACUUCUAUUUUUUUUCUUUCC	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1260_c1_g2_861_TPlot.pdf
TRINITY_DN1260_c1_g2:876	si_a784	TRINITY_DN1260_c1_g2	865	894	876	-24.70	-16.70	0.676113360323887	21.5	2-9,893-886;10-21,876-865	1-1,894-894[UP5];x-x,885-877[BULt]	((((((((((((.........((((((((.&.))))))))---------))))))))))))	GGAAUAGAGAAACGGAAAUACUGGAAGAGC&ACUCUUCUA---------UUUUUCUAUUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g2_876_TPlot.pdf
TRINITY_DN1260_c1_g2:987	si_s70	TRINITY_DN1260_c1_g2	973	996	987	-25.80	-17.20	0.666666666666667	8	2-13,995-984;14-19,982-977;20-21,974-973	1-1,996-996[UP5];x-x,983-983[BULt];x-x,976-975[BULt]	((..((((((.((((((((((((.&.))))))))))))-))))))--))	GGUCGAAGAGAAAGAGAUGGAAGA&ACUUCUAUUUUUU-UUCUUU--CC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1260_c1_g2_987_TPlot.pdf
TRINITY_DN1260_c1_g2:988	si_a785	TRINITY_DN1260_c1_g2	977	997	988	-25.90	-18.28	0.705791505791506	6.5	1-13,997-985;17-21,981-977	14-16,984-982[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	GAAGAGAAAGAGAUGGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999999994981852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1260_c1_g2_988_TPlot.pdf
TRINITY_DN1260_c1_g2:989	si_s68	TRINITY_DN1260_c1_g2	977	998	989	-23.10	-16.20	0.701298701298701	9.5	4-15,995-984;16-21,982-977	1-3,998-996[UP5];x-x,983-983[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAAGAGAAAGAGAUGGAAGAGA&CAACUUCUAUUUUUU-UUCUUU	2	0.999999489215083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1260_c1_g2_989_TPlot.pdf
TRINITY_DN1260_c1_g3:1075	si_s79	TRINITY_DN1260_c1_g3	1064	1084	1075	-26.20	-18.00	0.687022900763359	6.5	2-13,1083-1072;15-18,1070-1067	1-1,1084-1084[UP5];14-14,1071-1071[SIL];19-21,1066-1064[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	ACAAAGAUGGGAAAGAAGAAU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1260_c1_g3_1075_TPlot.pdf
TRINITY_DN1260_c1_g3:1078	si_s76	TRINITY_DN1260_c1_g3	1067	1087	1078	-23.60	-18.00	0.76271186440678	9.5	5-16,1083-1072;18-21,1070-1067	1-4,1087-1084[UP5];17-17,1071-1071[SIL]	((((.((((((((((((....&....)))))))))))).))))	AAGAUGGGAAAGAAGAAUAUU&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1260_c1_g3_1078_TPlot.pdf
TRINITY_DN1260_c1_g3:1079	si_s75	TRINITY_DN1260_c1_g3	1068	1088	1079	-24.00	-17.10	0.7125	11.5	6-17,1083-1072;19-21,1070-1068	1-5,1088-1084[UP5];18-18,1071-1071[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	AGAUGGGAAAGAAGAAUAUUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1260_c1_g3_1079_TPlot.pdf
TRINITY_DN1260_c1_g3:1083	si_s71	TRINITY_DN1260_c1_g3	1072	1093	1083	-25.70	-18.50	0.719844357976654	11.5	1-5,1093-1089;10-21,1083-1072	6-9,1088-1084[AILt]	((((((((((((.....(((((&)))))-....))))))))))))	GGGAAAGAAGAAUAUUAAGAAG&CUUCU-AUUUUUUUUCUUUCCU	3	0.999999999993307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g3_1083_TPlot.pdf
TRINITY_DN1260_c1_g3:1084	si_s70	TRINITY_DN1260_c1_g3	1073	1094	1084	-25.80	-17.40	0.674418604651163	11.5	2-6,1093-1089;11-21,1083-1073	1-1,1094-1094[UP5];7-10,1088-1084[AILt]	(((((((((((.....(((((.&.)))))-....)))))))))))	GGAAAGAAGAAUAUUAAGAAGA&ACUUCU-AUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1260_c1_g3_1084_TPlot.pdf
TRINITY_DN1260_c1_g3:1281	si_s77	TRINITY_DN1260_c1_g3	1265	1290	1281	-25.50	-17.90	0.701960784313725	9.5	1-13,1290-1278;14-21,1272-1265	x-x,1277-1273[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	GAGGGGAGUGGAUGGGAGAAAAAGAA&UUUUUUUUCUUUC-----CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1260_c1_g3_1281_TPlot.pdf
TRINITY_DN1260_c1_g3:1284	si_a784	TRINITY_DN1260_c1_g3	1273	1294	1284	-24.70	-17.40	0.704453441295547	9	2-8,1293-1287;10-20,1284-1274	1-1,1294-1294[UP5];9-9,1286-1285[AILt];21-21,1273-1273[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	UGGAUGGGAGAAAAAGAAGAGG&ACUCUUCU-AUUUUUCUAUUUU	2	0.999979918334748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1260_c1_g3_1284_TPlot.pdf
TRINITY_DN1260_c1_g3:1285	si_a783	TRINITY_DN1260_c1_g3	1274	1295	1285	-24.70	-17.40	0.704453441295547	9.5	3-9,1293-1287;11-21,1284-1274	1-2,1295-1294[UP5];10-10,1286-1285[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GGAUGGGAGAAAAAGAAGAGGA&AACUCUUCU-AUUUUUCUAUUU	3	0.999999918000445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1260_c1_g3_1285_TPlot.pdf
TRINITY_DN1260_c1_g3:1289	si_s69	TRINITY_DN1260_c1_g3	1278	1299	1289	-23.40	-17.40	0.743589743589744	10	3-7,1297-1293;9-21,1290-1278	1-2,1299-1298[UP5];8-8,1292-1291[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGGAGAAAAAGAAGAGGAAGGC&AACUUCU-AUUUUUUUUCUUUC	4	0.999999997943882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1260_c1_g3_1289_TPlot.pdf
TRINITY_DN1260_c1_g3:1290	si_s68	TRINITY_DN1260_c1_g3	1279	1300	1290	-23.10	-15.30	0.662337662337662	12	4-8,1297-1293;10-21,1290-1279	1-3,1300-1298[UP5];9-9,1292-1291[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	GGAGAAAAAGAAGAGGAAGGCC&CAACUUCU-AUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1260_c1_g3_1290_TPlot.pdf
TRINITY_DN1260_c1_g3:1306	si_s72	TRINITY_DN1260_c1_g3	1291	1315	1306	-24.10	-18.30	0.759336099585062	10	1-13,1315-1303;14-21,1298-1291	x-x,1302-1299[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	GAGGAAGGCCAAGGAAGAGAUGGAG&UUCUAUUUUUUUU----CUUUCCUU	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1260_c1_g3_1306_TPlot.pdf
TRINITY_DN1260_c1_g3:1307	si_s71	TRINITY_DN1260_c1_g3	1292	1316	1307	-25.70	-20.60	0.801556420233463	9.5	1-14,1316-1303;15-21,1298-1292	x-x,1302-1299[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	AGGAAGGCCAAGGAAGAGAUGGAGG&CUUCUAUUUUUUUU----CUUUCCU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1260_c1_g3_1307_TPlot.pdf
TRINITY_DN1260_c1_g3:1308	si_s70	TRINITY_DN1260_c1_g3	1293	1317	1308	-25.80	-19.50	0.755813953488372	10.5	2-15,1316-1303;16-21,1298-1293	1-1,1317-1317[UP5];x-x,1302-1299[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	GGAAGGCCAAGGAAGAGAUGGAGGG&ACUUCUAUUUUUUUU----CUUUCC	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1260_c1_g3_1308_TPlot.pdf
TRINITY_DN1260_c1_g3:1309	si_a500	TRINITY_DN1260_c1_g3	1298	1323	1309	-34.40	-22.92	0.666279069767442	17	1-9,1323-1315;11-20,1308-1299	10-10,1314-1309[AILt];21-21,1298-1298[UP3]	.((((((((((......(((((((((&)))))))))-----.)))))))))).	GCCAAGGAAGAGAUGGAGGGAGGCGA&UCGUUUUUC-----GUCUUCCUUGGA	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1260_c1_g3_1309_TPlot.pdf
TRINITY_DN1260_c1_g3:1314	si_a544	TRINITY_DN1260_c1_g3	1303	1323	1314	-28.90	-21.20	0.73356401384083	10	1-3,1323-1321;5-7,1319-1317;10-20,1314-1304	4-4,1320-1320[SIL];8-9,1316-1315[SIL];21-21,1303-1303[UP3]	.(((((((((((..(((.(((&))).)))..))))))))))).	GGAAGAGAUGGAGGGAGGCGA&UCGGUUCAAUCUAUUUCUUUA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN1260_c1_g3_1314_TPlot.pdf
TRINITY_DN1260_c1_g3:888	si_s72	TRINITY_DN1260_c1_g3	876	897	888	-24.10	-16.00	0.663900414937759	8	3-5,895-893;7-17,891-881;18-21,879-876	1-2,897-896[UP5];6-6,892-892[SIL];x-x,880-880[BULt]	((((.(((((((((((.(((..&..))).)))))))))))-))))	GAGGAAGAGAAAGAAAUUAGUU&UUCUAUUUUUUUUCUUU-CCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1260_c1_g3_888_TPlot.pdf
TRINITY_DN1261_c0_g2:418	si_s42	TRINITY_DN1261_c0_g2	407	428	418	-24.90	-17.30	0.694779116465864	8	1-6,428-423;8-19,420-409	7-7,422-421[AILt];20-21,408-407[UP3]	..((((((((((((..((((((&))))))-.))))))))))))..	AAGAGAUUCAAUUAGGUGAAGA&UCUUUA-AUAAUUGGAUUUCAA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN1261_c0_g2_418_TPlot.pdf
TRINITY_DN1261_c0_g2:419	si_s41	TRINITY_DN1261_c0_g2	408	429	419	-25.00	-17.30	0.692	8	2-7,428-423;9-20,420-409	1-1,429-429[UP5];8-8,422-421[AILt];21-21,408-408[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	AGAGAUUCAAUUAGGUGAAGAA&AUCUUUA-AUAAUUGGAUUUCA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN1261_c0_g2_419_TPlot.pdf
TRINITY_DN1261_c0_g2:742	si_s352	TRINITY_DN1261_c0_g2	730	751	742	-27.20	-18.20	0.669117647058823	5	1-7,751-745;9-13,743-739;14-20,737-731	8-8,744-744[SIL];x-x,738-738[BULt];21-21,730-730[UP3]	.(((((((.(((((.(((((((&))))))).)))))-))))))).	AUUAGUCUCAUUUCGUUAUCUC&GAGAUAAAGAAAU-AGAUUGAA	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN1261_c0_g2_742_TPlot.pdf
TRINITY_DN1261_c0_g2:787	si_s759	TRINITY_DN1261_c0_g2	776	796	787	-23.80	-15.50	0.651260504201681	11.5	5-17,792-780	1-4,796-793[UP5];18-21,779-776[UP3]	....(((((((((((((....&....)))))))))))))....	CACCUAAUUGUUGUUGUAUCA&UAAAACAACAACGAUUAAUUA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s759_TRINITY_DN1261_c0_g2_787_TPlot.pdf
TRINITY_DN1261_c0_g2:788	si_s449	TRINITY_DN1261_c0_g2	777	797	788	-23.60	-15.60	0.661016949152542	9	4-18,794-780	1-3,797-795[UP5];19-21,779-777[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACCUAAUUGUUGUUGUAUCAA&UAUAUAUAACAACAAUUAUCU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN1261_c0_g2_788_TPlot.pdf
TRINITY_DN1261_c0_g2:791	si_s446	TRINITY_DN1261_c0_g2	780	804	791	-21.30	-17.20	0.807511737089202	10	1-6,804-799;7-21,794-780	x-x,798-795[BULt]	(((((((((((((((....((((((&))))))----)))))))))))))))	UAAUUGUUGUUGUAUCAAAGUAAUA&UAUUAU----AUAUAACAACAAUUA	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN1261_c0_g2_791_TPlot.pdf
TRINITY_DN12623_c0_g1:1001	si_s80	TRINITY_DN12623_c0_g1	990	1010	1001	-28.20	-21.40	0.75886524822695	6	3-9,1008-1002;11-21,1000-990	1-2,1010-1009[UP5];10-10,1001-1001[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GAAGAAGAAAGAGAAGAAAUA&UUUUUCUUUCCUUUCUUCUUC	2	0.999976683505974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN12623_c0_g1_1001_TPlot.pdf
TRINITY_DN12623_c0_g1:1007	si_s69	TRINITY_DN12623_c0_g1	996	1016	1007	-23.40	-20.40	0.871794871794872	6.5	4-21,1013-996	1-3,1016-1014[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAAGAGAAGAAAUAGAAAGA&AACUUCUAUUUUUUUUCUUUC	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN12623_c0_g1_1007_TPlot.pdf
TRINITY_DN12623_c0_g1:1008	si_s68	TRINITY_DN12623_c0_g1	997	1017	1008	-23.10	-17.20	0.744588744588744	8	5-21,1013-997	1-4,1017-1014[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAGAAGAAAUAGAAAGAA&CAACUUCUAUUUUUUUUCUUU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12623_c0_g1_1008_TPlot.pdf
TRINITY_DN12623_c0_g1:1366	si_s74	TRINITY_DN12623_c0_g1	1355	1375	1366	-25.00	-17.80	0.712	7	2-17,1374-1359	1-1,1375-1375[UP5];18-21,1358-1355[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGAUGGAAAGAAAAAAGAUGC&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999997889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12623_c0_g1_1366_TPlot.pdf
TRINITY_DN12623_c0_g1:1367	si_s73	TRINITY_DN12623_c0_g1	1356	1377	1367	-24.00	-18.60	0.775	7	1-2,1377-1376;3-18,1374-1359	x-x,1375-1375[BULt];19-21,1358-1356[UP3]	...((((((((((((((((.((&))-))))))))))))))))...	GAUGGAAAGAAAAAAGAUGCGA&UC-UAUUUUUUUUCUUUCCUUU	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12623_c0_g1_1367_TPlot.pdf
TRINITY_DN12623_c0_g1:1394	si_s79	TRINITY_DN12623_c0_g1	1382	1403	1394	-26.20	-17.50	0.66793893129771	5	1-15,1403-1389;18-20,1385-1383	16-17,1388-1386[AILt];21-21,1382-1382[UP3]	.(((...(((((((((((((((&)))))))))))))))-..))).	CAGAUUUGGAGGAAAGAAAAAA&UUUUUUCUUUCCUUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12623_c0_g1_1394_TPlot.pdf
TRINITY_DN12623_c0_g1:1395	si_s78	TRINITY_DN12623_c0_g1	1383	1404	1395	-26.20	-17.70	0.675572519083969	5	2-16,1403-1389;19-21,1385-1383	1-1,1404-1404[UP5];17-18,1388-1386[AILt]	(((...(((((((((((((((.&.)))))))))))))))-..)))	AGAUUUGGAGGAAAGAAAAAAG&UUUUUUUCUUUCCUUU-CUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12623_c0_g1_1395_TPlot.pdf
TRINITY_DN12623_c0_g1:1396	si_s77	TRINITY_DN12623_c0_g1	1385	1405	1396	-25.50	-18.30	0.717647058823529	6	1-17,1405-1389	18-21,1388-1385[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUUUGGAGGAAAGAAAAAAGA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN12623_c0_g1_1396_TPlot.pdf
TRINITY_DN12623_c0_g1:1398	si_s75	TRINITY_DN12623_c0_g1	1387	1407	1398	-24.00	-20.40	0.85	4.5	1-19,1407-1389	20-21,1388-1387[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUGGAGGAAAGAAAAAAGAUG&UAUUUUUUUUCUUUCCUUUCU	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12623_c0_g1_1398_TPlot.pdf
TRINITY_DN12623_c0_g1:1399	si_s74	TRINITY_DN12623_c0_g1	1388	1408	1399	-25.00	-20.50	0.82	5	2-20,1407-1389	1-1,1408-1408[UP5];21-21,1388-1388[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UGGAGGAAAGAAAAAAGAUGC&CUAUUUUUUUUCUUUCCUUUC	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12623_c0_g1_1399_TPlot.pdf
TRINITY_DN12623_c0_g1:1400	si_s73	TRINITY_DN12623_c0_g1	1389	1409	1400	-24.00	-20.50	0.854166666666667	6	3-21,1407-1389	1-2,1409-1408[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GGAGGAAAGAAAAAAGAUGCU&UCUAUUUUUUUUCUUUCCUUU	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12623_c0_g1_1400_TPlot.pdf
TRINITY_DN12623_c0_g1:1475	si_a760	TRINITY_DN12623_c0_g1	1464	1484	1475	-31.10	-21.30	0.684887459807074	9.5	1-3,1484-1482;6-18,1479-1467	4-5,1481-1480[SIL];19-21,1466-1464[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	AGGGAUCAAAGACCUAUUGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN12623_c0_g1_1475_TPlot.pdf
TRINITY_DN12623_c0_g1:1477	si_a758	TRINITY_DN12623_c0_g1	1466	1486	1477	-34.00	-27.50	0.808823529411765	7	1-5,1486-1482;8-20,1479-1467	6-7,1481-1480[SIL];21-21,1466-1466[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	GGAUCAAAGACCUAUUGGAGG&CCUCCUUUGGGUUUUUGAUUG	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN12623_c0_g1_1477_TPlot.pdf
TRINITY_DN12623_c0_g1:1479	si_a756	TRINITY_DN12623_c0_g1	1468	1491	1479	-33.10	-27.40	0.827794561933535	8.5	1-9,1491-1483;10-21,1479-1468	x-x,1482-1480[BULt]	((((((((((((...(((((((((&)))))))))---))))))))))))	AUCAAAGACCUAUUGGAGGAGGUU&AACCUCCUU---UGGGUUUUUGAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN12623_c0_g1_1479_TPlot.pdf
TRINITY_DN12623_c0_g1:239	si_a319	TRINITY_DN12623_c0_g1	228	248	239	-22.40	-15.20	0.678571428571429	12	5-19,244-230	1-4,248-245[UP5];20-21,229-228[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUUAGGAAAGUUAUGGAACCC&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999992029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN12623_c0_g1_239_TPlot.pdf
TRINITY_DN12623_c0_g1:240	si_a318	TRINITY_DN12623_c0_g1	229	249	240	-22.50	-15.20	0.675555555555556	12.5	6-20,244-230	1-5,249-245[UP5];21-21,229-229[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUAGGAAAGUUAUGGAACCCU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999966881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN12623_c0_g1_240_TPlot.pdf
TRINITY_DN12623_c0_g1:998	si_s83	TRINITY_DN12623_c0_g1	987	1007	998	-30.90	-20.90	0.676375404530744	6	1-6,1007-1002;8-18,1000-990	7-7,1001-1001[SIL];19-21,989-987[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	ACUGAAGAAGAAAGAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN12623_c0_g1_998_TPlot.pdf
TRINITY_DN12623_c0_g1:999	si_s82	TRINITY_DN12623_c0_g1	988	1008	999	-28.90	-21.60	0.747404844290658	5	1-7,1008-1002;9-19,1000-990	8-8,1001-1001[SIL];20-21,989-988[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	CUGAAGAAGAAAGAGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	2	0.99999570915035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN12623_c0_g1_999_TPlot.pdf
TRINITY_DN12625_c0_g2:1739	si_s803	TRINITY_DN12625_c0_g2	1727	1748	1739	-26.00	-21.00	0.807692307692308	8	4-13,1745-1736;14-21,1734-1727	1-3,1748-1746[UP5];x-x,1735-1735[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AGAAGGUGAACGAAGAUGACAU&AUUUUAUCUUCGU-UACCUUUU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12625_c0_g2_1739_TPlot.pdf
TRINITY_DN12625_c0_g2:718	si_a71	TRINITY_DN12625_c0_g2	707	727	718	-23.30	-17.40	0.746781115879828	5	2-13,726-715;16-20,712-708	1-1,727-727[UP5];14-15,714-713[SIL];21-21,707-707[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	AAAUGAUUAACAAUUUGGAAA&CUUUCAAAUUGUUUUUCAUUA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN12625_c0_g2_718_TPlot.pdf
TRINITY_DN1263_c0_g3:343	si_a34	TRINITY_DN1263_c0_g3	332	353	343	-38.10	-25.90	0.679790026246719	10.5	1-6,353-348;8-9,346-345;11-20,342-333	7-7,347-347[SIL];10-10,344-343[AILt];21-21,332-332[UP3]	.((((((((((..((.((((((&)))))).))-.)))))))))).	UGGCCUACCGGCGCUCGGGGCU&AGUUCUAAG-ACCGGUAGGUCU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a34_TRINITY_DN1263_c0_g3_343_TPlot.pdf
TRINITY_DN1263_c0_g4:1459	si_a401	TRINITY_DN1263_c0_g4	1448	1469	1459	-22.60	-15.30	0.676991150442478	3.5	1-9,1469-1461;10-17,1459-1452;19-21,1450-1448	x-x,1460-1460[BULt];18-18,1451-1451[SIL]	(((.((((((((.(((((((((&)))))))))-)))))))).)))	AUAGAAACGAAAUCAAUUCUAU&AUAGAAUUG-UUUUGUUUAUAU	3	0.999999938237291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1263_c0_g4_1459_TPlot.pdf
TRINITY_DN1263_c0_g4:1463	si_a398	TRINITY_DN1263_c0_g4	1451	1472	1463	-22.40	-15.30	0.683035714285714	8.5	4-12,1469-1461;13-20,1459-1452	1-3,1472-1470[UP5];x-x,1460-1460[BULt];21-21,1451-1451[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	GAAACGAAAUCAAUUCUAUUAU&AAUAUAGAAUUG-UUUUGUUUA	3	0.999998813333396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1263_c0_g4_1463_TPlot.pdf
TRINITY_DN1263_c0_g4:4308	si_a69	TRINITY_DN1263_c0_g4	4297	4318	4308	-24.00	-16.70	0.695833333333333	6	1-5,4318-4314;6-9,4312-4309;11-21,4307-4297	x-x,4313-4313[BULt];10-10,4308-4308[SIL]	(((((((((((.((((.(((((&)))))-)))).)))))))))))	AUGAAGGACAAAUUGAUAAGGA&UUCUU-UCAAAUUGUUUUUCAU	3	0.999999087914908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1263_c0_g4_4308_TPlot.pdf
TRINITY_DN1263_c0_g4:4328	si_a326	TRINITY_DN1263_c0_g4	4311	4337	4328	-26.20	-18.10	0.690839694656489	14.5	2-11,4336-4327;12-21,4320-4311	1-1,4337-4337[UP5];x-x,4326-4321[BULt]	((((((((((......((((((((((.&.))))))))))------))))))))))	GAUAAGGAAUUGAAACAAAAAAGUCAA&AUGAUUUUUUU------AUUCCUUGUC	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1263_c0_g4_4328_TPlot.pdf
TRINITY_DN1263_c0_g4:4418	si_s89	TRINITY_DN1263_c0_g4	4407	4427	4418	-35.30	-23.30	0.660056657223796	6	1-14,4427-4414;16-18,4412-4410	15-15,4413-4413[SIL];19-21,4409-4407[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	CUUGGCAAGGAAGGAGAAAGG&CCUUUCUUCUUCUUCGCUUCG	2	0.999999999669543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1263_c0_g4_4418_TPlot.pdf
TRINITY_DN1263_c0_g4:4423	si_s73	TRINITY_DN1263_c0_g4	4412	4436	4423	-24.00	-16.10	0.670833333333333	13.5	2-5,4435-4432;6-20,4427-4413	1-1,4436-4436[UP5];x-x,4431-4428[BULt];21-21,4412-4412[UP3]	.(((((((((((((((....((((.&.))))----))))))))))))))).	CAAGGAAGGAGAAAGGCUUUAUAGU&UCUAU----UUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1263_c0_g4_4423_TPlot.pdf
TRINITY_DN1263_c0_g4:4424	si_s72	TRINITY_DN1263_c0_g4	4413	4437	4424	-24.10	-16.10	0.66804979253112	14.5	3-6,4435-4432;7-21,4427-4413	1-2,4437-4436[UP5];x-x,4431-4428[BULt]	(((((((((((((((....((((..&..))))----)))))))))))))))	AAGGAAGGAGAAAGGCUUUAUAGUA&UUCUAU----UUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1263_c0_g4_4424_TPlot.pdf
TRINITY_DN1263_c0_g4:450	si_a141	TRINITY_DN1263_c0_g4	439	459	450	-23.80	-17.50	0.735294117647059	9	3-17,457-443	1-2,459-458[UP5];18-21,442-439[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACACACAACAAUGAUUGAUAA&UAAUUAAUCGUUGUUGUUUUA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1263_c0_g4_450_TPlot.pdf
TRINITY_DN1263_c0_g4:451	si_a140	TRINITY_DN1263_c0_g4	440	460	451	-25.20	-17.50	0.694444444444444	10	4-18,457-443	1-3,460-458[UP5];19-21,442-440[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACACAACAAUGAUUGAUAAA&GUAAUUAAUCGUUGUUGUUUU	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN1263_c0_g4_451_TPlot.pdf
TRINITY_DN1263_c0_g4:707	si_s79	TRINITY_DN1263_c0_g4	696	722	707	-26.20	-17.20	0.656488549618321	17.5	2-7,721-716;8-19,709-698	1-1,722-722[UP5];x-x,715-710[BULt];20-21,697-696[UP3]	..((((((((((((......((((((.&.))))))------))))))))))))..	CUGAAGAAGGGGAAACAGACGAAGAAG&UUUUUUC------UUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1263_c0_g4_707_TPlot.pdf
TRINITY_DN1263_c0_g4:888	si_a80	TRINITY_DN1263_c0_g4	877	897	888	-22.10	-15.40	0.69683257918552	7	1-15,897-883	16-21,882-877[UP3]	......(((((((((((((((&)))))))))))))))......	AUAUAAUAAUAAUGAGAAACA&UGUUUUUCAUUAUUAAGAAAA	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1263_c0_g4_888_TPlot.pdf
TRINITY_DN1263_c0_g4:893	si_a75	TRINITY_DN1263_c0_g4	882	902	893	-21.30	-15.60	0.732394366197183	11	6-20,897-883	1-5,902-898[UP5];21-21,882-882[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUAAUAAUGAGAAACAUGAUC&CAAAUUGUUUUUCAUUAUUAA	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1263_c0_g4_893_TPlot.pdf
TRINITY_DN1263_c0_g4:894	si_a74	TRINITY_DN1263_c0_g4	883	900	894	-22.20	-15.50	0.698198198198198	7	1-3,900-898;7-21,897-883	4-6,x-x[BULq]	(((((((((((((((---(((&)))...)))))))))))))))	UAAUAAUGAGAAACA---UGA&UCAAAUUGUUUUUCAUUAUUA	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1263_c0_g4_894_TPlot.pdf
TRINITY_DN12648_c0_g2:63	si_a838	TRINITY_DN12648_c0_g2	51	72	63	-26.50	-17.50	0.660377358490566	13.5	6-11,67-62;12-21,60-51	1-5,72-68[UP5];x-x,61-61[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GGUUAGCAAUAUUCUGUGUGUG&AAAAAAUAGAA-GUUGCUAACU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN12648_c0_g2_63_TPlot.pdf
TRINITY_DN1264_c0_g1:602	si_s887	TRINITY_DN1264_c0_g1	600	611	602	-26.80	-17.70	0.66044776119403	1	11-21,610-600	10-10,611-611[SIL]	(((((((((((.&.)))))))))))	GGAGAAAGCCUU&AAAAAUAAAUAG	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN1264_c0_g1_602_TPlot.pdf
TRINITY_DN1264_c0_g1:637	si_s536	TRINITY_DN1264_c0_g1	626	646	637	-27.70	-19.10	0.689530685920578	6.5	3-17,644-630;19-21,628-626	1-2,646-645[UP5];18-18,629-629[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GUUGUGGUUGGAUCAGAAACA&CAUUUUUGAUCCGAUCAAAAU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN1264_c0_g1_637_TPlot.pdf
TRINITY_DN12656_c0_g1:821	si_s84	TRINITY_DN12656_c0_g1	810	831	821	-32.30	-27.20	0.842105263157895	6.5	1-6,831-826;7-20,824-811	x-x,825-825[BULt];21-21,810-810[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	AGGAGAGGGAGAGAGAGAGAGA&UCUUUC-CUUUCUUCUUCUUCG	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN12656_c0_g1_821_TPlot.pdf
TRINITY_DN12657_c0_g1:29	si_s82	TRINITY_DN12657_c0_g1	18	38	29	-28.90	-20.80	0.719723183391003	7.5	3-7,36-32;9-21,30-18	1-2,38-37[UP5];8-8,31-31[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AGGAGGAGGAGAGUAAAGAUG&UUUCUUUCCUUUCUUCUUCUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN12657_c0_g1_29_TPlot.pdf
TRINITY_DN12659_c0_g2:427	si_a721	TRINITY_DN12659_c0_g2	415	436	427	-35.10	-24.30	0.692307692307692	11.5	4-12,433-425;13-19,423-417	1-3,436-434[UP5];x-x,424-424[BULt];20-21,416-415[UP3]	..(((((((.(((((((((...&...)))))))))-)))))))..	AUGAUGCCUGGAGUGACGGCGG&UAAUCGUUACUC-GGGCAUCUU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN12659_c0_g2_427_TPlot.pdf
TRINITY_DN12659_c0_g2:429	si_a719	TRINITY_DN12659_c0_g2	417	438	429	-34.60	-23.90	0.690751445086705	12.5	6-14,433-425;15-21,423-417	1-5,438-434[UP5];x-x,424-424[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	GAUGCCUGGAGUGACGGCGGAC&AAUAAUCGUUACUC-GGGCAUC	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN12659_c0_g2_429_TPlot.pdf
TRINITY_DN12659_c0_g2:439	si_s377	TRINITY_DN12659_c0_g2	427	449	439	-44.10	-33.00	0.748299319727891	7.5	3-8,447-442;9-17,440-432;18-21,430-427	1-2,449-448[UP5];x-x,441-441[BULt];x-x,431-431[BULt]	((((.(((((((((.((((((..&..))))))-)))))))))-))))	GUGACGGCGGACAUGGCGAGCAU&UCGCUCGC-GUGUCCGCC-UUAC	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN12659_c0_g2_439_TPlot.pdf
TRINITY_DN12659_c0_g2:619	si_a627	TRINITY_DN12659_c0_g2	608	628	619	-29.50	-19.40	0.657627118644068	13	1-6,628-623;9-14,620-615	7-8,622-621[SIL];15-21,614-608[UP3]	.......((((((..((((((&))))))..)))))).......	CCAACGACGACGUCUUGCGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.999999656177692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN12659_c0_g2_619_TPlot.pdf
TRINITY_DN1265_c4_g1:197	si_a400	TRINITY_DN1265_c4_g1	182	206	197	-22.80	-15.70	0.68859649122807	12	1-11,206-196;12-21,191-182	x-x,195-192[BULt]	((((((((((....(((((((((((&)))))))))))----))))))))))	UGUAGACAGAGAACAUGAUUCUAUG&UAUAGAAUUGU----UUUGUUUAUA	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1265_c4_g1_197_TPlot.pdf
TRINITY_DN12660_c1_g3:123	si_a817	TRINITY_DN12660_c1_g3	112	132	123	-30.90	-21.40	0.692556634304207	7	1-14,132-119	15-21,118-112[UP3]	.......((((((((((((((&)))))))))))))).......	AACAGCACUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN12660_c1_g3_123_TPlot.pdf
TRINITY_DN12660_c1_g3:124	si_a816	TRINITY_DN12660_c1_g3	113	133	124	-32.30	-21.50	0.665634674922601	7	2-15,132-119	1-1,133-133[UP5];16-21,118-113[UP3]	......((((((((((((((.&.))))))))))))))......	ACAGCACUUUCUUCUUCUUCA&CGAAGAAGAAGAAAGGAAAGA	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN12660_c1_g3_124_TPlot.pdf
TRINITY_DN12660_c1_g3:126	si_a814	TRINITY_DN12660_c1_g3	115	135	126	-32.90	-21.50	0.653495440729483	9	4-17,132-119	1-3,135-133[UP5];18-21,118-115[UP3]	....((((((((((((((...&...))))))))))))))....	AGCACUUUCUUCUUCUUCAAA&AGCGAAGAAGAAGAAAGGAAA	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN12660_c1_g3_126_TPlot.pdf
TRINITY_DN12660_c1_g3:127	si_a813	TRINITY_DN12660_c1_g3	116	136	127	-32.90	-21.50	0.653495440729483	10	5-18,132-119	1-4,136-133[UP5];19-21,118-116[UP3]	...((((((((((((((....&....))))))))))))))...	GCACUUUCUUCUUCUUCAAAU&AAGCGAAGAAGAAGAAAGGAA	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN12660_c1_g3_127_TPlot.pdf
TRINITY_DN1266_c0_g1:163	si_a894	TRINITY_DN1266_c0_g1	152	172	163	-21.70	-14.90	0.686635944700461	7.5	3-11,170-162;13-19,160-154	1-2,172-171[UP5];12-12,161-161[SIL];20-21,153-152[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	UGAUUGCUUUUUAUUACUAAA&UAUAGUAAUAAUAAGUAAUAU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN1266_c0_g1_163_TPlot.pdf
TRINITY_DN1266_c0_g1:164	si_a893	TRINITY_DN1266_c0_g1	153	173	164	-21.70	-14.90	0.686635944700461	7.5	4-12,170-162;14-20,160-154	1-3,173-171[UP5];13-13,161-161[SIL];21-21,153-153[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	GAUUGCUUUUUAUUACUAAAU&AUAUAGUAAUAAUAAGUAAUA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN1266_c0_g1_164_TPlot.pdf
TRINITY_DN12671_c0_g1:83	si_a283	TRINITY_DN12671_c0_g1	72	92	83	-28.30	-18.60	0.657243816254417	13	5-13,88-80;15-19,78-74	1-4,92-89[UP5];14-14,79-79[SIL];20-21,73-72[UP3]	..(((((.(((((((((....&....))))))))).)))))..	UGUAGGUGCGGGCGAUCACCA&AAAAGAUCGCUUGGAUUUAAA	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN12671_c0_g1_83_TPlot.pdf
TRINITY_DN12671_c0_g3:1081	si_s804	TRINITY_DN12671_c0_g3	1070	1090	1081	-27.90	-18.50	0.663082437275986	7	1-8,1090-1083;11-20,1080-1071	9-10,1082-1081[SIL];21-21,1070-1070[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	AAGAAGGUGACCUGGAUAAAA&UUUUAUCUUCGUUACCUUUUC	4	0.999999999989136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN12671_c0_g3_1081_TPlot.pdf
TRINITY_DN12671_c0_g3:1082	si_s803	TRINITY_DN12671_c0_g3	1071	1091	1082	-26.00	-18.50	0.711538461538462	7	2-9,1090-1083;12-21,1080-1071	1-1,1091-1091[UP5];10-11,1082-1081[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	AGAAGGUGACCUGGAUAAAAC&AUUUUAUCUUCGUUACCUUUU	4	0.999987259542911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12671_c0_g3_1082_TPlot.pdf
TRINITY_DN12671_c0_g3:1083	si_s802	TRINITY_DN12671_c0_g3	1072	1092	1083	-26.40	-17.70	0.670454545454545	9	3-10,1090-1083;13-21,1080-1072	1-2,1092-1091[UP5];11-12,1082-1081[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	GAAGGUGACCUGGAUAAAACG&UAUUUUAUCUUCGUUACCUUU	4	0.999999996625536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN12671_c0_g3_1083_TPlot.pdf
TRINITY_DN12671_c0_g3:3450	si_a405	TRINITY_DN12671_c0_g3	3439	3459	3450	-19.80	-13.10	0.661616161616162	7	2-7,3458-3453;9-20,3451-3440	1-1,3459-3459[UP5];8-8,3452-3452[SIL];21-21,3439-3439[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	CUAAAUAUAAAUAUGAUAAUA&AAUUGUUUUGUUUAUAUUUAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN12671_c0_g3_3450_TPlot.pdf
TRINITY_DN12671_c0_g3:461	si_s412	TRINITY_DN12671_c0_g3	450	470	461	-26.40	-17.50	0.662878787878788	13	6-19,465-452	1-5,470-466[UP5];20-21,451-450[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAGUGGAAUAUGUUGUGAUGG&GAAAAACGACAUAUUCUAUAU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s412_TRINITY_DN12671_c0_g3_461_TPlot.pdf
TRINITY_DN12671_c0_g3:570	si_a412	TRINITY_DN12671_c0_g3	558	579	570	-18.30	-13.10	0.715846994535519	6.5	1-13,579-567;15-19,564-560	14-14,566-565[AILt];20-21,559-558[UP3]	..(((((..(((((((((((((&)))))))))))))-.)))))..	UCUUUGUGAUAAAUGUGAACAA&UUGUUUAUAUUUA-AAUAAAUA	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN12671_c0_g3_570_TPlot.pdf
TRINITY_DN12675_c0_g1:864	si_s869	TRINITY_DN12675_c0_g1	853	873	864	-35.10	-23.26	0.662678062678063	9	1-12,873-862;17-18,857-856	13-16,861-858[SIL];19-21,855-853[UP3]	...((....((((((((((((&))))))))))))....))...	CGGAGGAAGAGGACCGGUGGG&CCUACCGGUCUUAGAACUAAA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s869_TRINITY_DN12675_c0_g1_864_TPlot.pdf
TRINITY_DN12679_c0_g1:137	si_s115	TRINITY_DN12679_c0_g1	126	147	137	-25.90	-17.10	0.66023166023166	6	1-5,147-143;7-20,140-127	6-6,142-141[AILt];21-21,126-126[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	AUUUUCUGUUUUUCUUCUUUUC&GAAAA-UAGAAAAAUAGAAGAG	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s115_TRINITY_DN12679_c0_g1_137_TPlot.pdf
TRINITY_DN1267_c0_g1:2709	si_s5	TRINITY_DN1267_c0_g1	2699	2718	2709	-21.70	-14.80	0.682027649769585	6.5	2-11,2717-2708;14-21,2706-2699	1-1,2718-2718[UP5];12-13,2707-2707[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	AUGGUAAUU-UAGGUGAUAUU&UAUAUUACUUAUUAUUACUAU	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN1267_c0_g1_2709_TPlot.pdf
TRINITY_DN12688_c1_g1:104	si_a142	TRINITY_DN12688_c1_g1	93	114	104	-23.50	-15.40	0.65531914893617	8.5	3-7,112-108;8-8,106-106;10-20,104-94	1-2,114-113[UP5];x-x,107-107[BULt];9-9,105-105[SIL];21-21,93-93[UP3]	.(((((((((((.(.(((((..&..)))))-).))))))))))).	CUAGAACAACAAGGUAUUAAAU&AAUUAAU-CGUUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN12688_c1_g1_104_TPlot.pdf
TRINITY_DN12689_c0_g1:1447	si_a22	TRINITY_DN12689_c0_g1	1436	1456	1447	-23.50	-17.00	0.723404255319149	8	1-3,1456-1454;6-18,1451-1439	4-5,1453-1452[SIL];19-21,1438-1436[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UGAAGAACUAAAAAUAUUUGG&CUAUUUAUUUUUAGUUCUAAG	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN12689_c0_g1_1447_TPlot.pdf
TRINITY_DN1268_c0_g1:373	si_a71	TRINITY_DN1268_c0_g1	362	382	373	-23.30	-15.28	0.655793991416309	8	1-8,382-375;12-20,371-363	9-11,374-372[SIL];21-21,362-362[UP3]	.(((((((((...((((((((&))))))))...))))))))).	AAAUGGAAGAACUUUUGAAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1268_c0_g1_373_TPlot.pdf
TRINITY_DN1268_c0_g1:374	si_a70	TRINITY_DN1268_c0_g1	363	383	374	-23.90	-16.58	0.693723849372385	7	1-9,383-375;13-21,371-363	10-12,374-372[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	AAUGGAAGAACUUUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1268_c0_g1_374_TPlot.pdf
TRINITY_DN1268_c0_g1:375	si_a69	TRINITY_DN1268_c0_g1	365	384	375	-24.00	-17.20	0.716666666666667	6.5	1-10,384-375;13-19,373-367	11-12,374-374[AILq];20-21,366-365[UP3]	..(((((((.-((((((((((&))))))))))..)))))))..	UGGAAGAACU-UUUGAAAGAA&UUCUUUCAAAUUGUUUUUCAU	2	0.998182325710981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1268_c0_g1_375_TPlot.pdf
TRINITY_DN1268_c0_g1:376	si_a68	TRINITY_DN1268_c0_g1	366	385	376	-25.40	-17.40	0.68503937007874	5.5	2-11,384-375;14-20,373-367	1-1,385-385[UP5];12-13,374-374[AILq];21-21,366-366[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	GGAAGAACU-UUUGAAAGAAA&CUUCUUUCAAAUUGUUUUUCA	2	0.999975493323183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1268_c0_g1_376_TPlot.pdf
TRINITY_DN1268_c0_g1:636	si_s71	TRINITY_DN1268_c0_g1	626	645	636	-25.70	-18.50	0.719844357976654	4	1-5,645-641;7-17,639-629;19-21,628-626	6-6,640-640[SIL];18-18,x-x[BULq]	(((-(((((((((((.(((((&))))).))))))))))).)))	AGG-AAGAAAAAGAAAAGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999735906632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1268_c0_g1_636_TPlot.pdf
TRINITY_DN1268_c0_g1:638	si_s69	TRINITY_DN1268_c0_g1	627	647	638	-23.40	-18.20	0.777777777777778	6.5	3-7,645-641;9-21,639-627	1-2,647-646[UP5];8-8,640-640[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GGAAGAAAAAGAAAAGAAGAA&AACUUCUAUUUUUUUUCUUUC	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1268_c0_g1_638_TPlot.pdf
TRINITY_DN1268_c0_g1:639	si_s68	TRINITY_DN1268_c0_g1	628	648	639	-23.10	-15.90	0.688311688311688	8.5	4-8,645-641;10-21,639-628	1-3,648-646[UP5];9-9,640-640[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAAAAAGAAAAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1268_c0_g1_639_TPlot.pdf
TRINITY_DN1268_c0_g1:659	si_s78	TRINITY_DN1268_c0_g1	641	668	659	-26.20	-18.70	0.713740458015267	13.5	4-15,665-654;16-21,646-641	1-3,668-666[UP5];x-x,653-647[BULt]	((((((.......((((((((((((...&...))))))))))))-------))))))	AGAAGAAACAAAGGAGGAGAGAAAAUUU&UUUUUUUCUUUCCUU-------UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1268_c0_g1_659_TPlot.pdf
TRINITY_DN1268_c0_g1:660	si_s77	TRINITY_DN1268_c0_g1	642	669	660	-25.50	-17.40	0.68235294117647	15.5	5-16,665-654;17-21,646-642	1-4,669-666[UP5];x-x,653-647[BULt]	(((((.......((((((((((((....&....))))))))))))-------)))))	GAAGAAACAAAGGAGGAGAGAAAAUUUA&UUUUUUUUCUUUCCUU-------UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1268_c0_g1_660_TPlot.pdf
TRINITY_DN12696_c0_g1:5019	si_a147	TRINITY_DN12696_c0_g1	5009	5028	5019	-30.40	-24.70	0.8125	7	2-15,5027-5014;17-20,5013-5010	1-1,5028-5028[UP5];16-16,x-x[BULq];21-21,5009-5009[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AGACC-UGGAGCAGCGACGAG&AUCGUUGUUGUUUUAAGGUCA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN12696_c0_g1_5019_TPlot.pdf
TRINITY_DN12696_c0_g1:5586	si_a496	TRINITY_DN12696_c0_g1	5575	5596	5586	-32.40	-22.80	0.703703703703704	13	4-8,5593-5589;11-20,5585-5576	1-3,5596-5594[UP5];9-10,5588-5586[AILt];21-21,5575-5575[UP3]	.((((((((((...(((((...&...)))))-..)))))))))).	UGGAAGACGAGUCCACGACGAA&UAUGUCGU-UUUUCGUCUUCCU	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN12696_c0_g1_5586_TPlot.pdf
TRINITY_DN12696_c0_g1:6208	si_s431	TRINITY_DN12696_c0_g1	6196	6217	6208	-21.10	-15.10	0.71563981042654	7.5	1-10,6217-6208;11-18,6206-6199	x-x,6207-6207[BULt];19-21,6198-6196[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UGUAUGUGUGACUUGUUGUUAU&AUAACAAUAA-UUACAUAUUAU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN12696_c0_g1_6208_TPlot.pdf
TRINITY_DN12699_c0_g1:1080	si_s76	TRINITY_DN12699_c0_g1	1069	1089	1080	-23.60	-15.50	0.656779661016949	7	2-5,1088-1085;7-18,1083-1072	1-1,1089-1089[UP5];6-6,1084-1084[SIL];19-21,1071-1069[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	AACAAAGGAAAGAAAUGAAAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN12699_c0_g1_1080_TPlot.pdf
TRINITY_DN1269_c0_g1:3851	si_a66	TRINITY_DN1269_c0_g1	3839	3860	3851	-26.70	-18.70	0.700374531835206	10	2-10,3859-3851;13-21,3847-3839	1-1,3860-3860[UP5];11-12,3850-3848[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	GAAGACGGUAAAGAAGGAAGCA&CGCUUCUUUC-AAAUUGUUUUU	3	0.999995751731662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1269_c0_g1_3851_TPlot.pdf
TRINITY_DN1269_c0_g1:4627	si_s41	TRINITY_DN1269_c0_g1	4616	4637	4627	-25.00	-18.90	0.756	8	1-9,4637-4629;12-20,4625-4617	10-11,4628-4626[AILt];21-21,4616-4616[UP3]	.(((((((((...(((((((((&)))))))))-..))))))))).	AGAAAUCCAACAGGUUAAAGAU&AUCUUUAAU-AAUUGGAUUUCA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN1269_c0_g1_4627_TPlot.pdf
TRINITY_DN1269_c0_g1:4640	si_a363	TRINITY_DN1269_c0_g1	4629	4649	4640	-26.40	-17.20	0.651515151515151	9.5	1-7,4649-4643;9-15,4641-4635	8-8,4642-4642[SIL];16-21,4634-4629[UP3]	......(((((((.(((((((&))))))).)))))))......	GUUAAAGAUCCGACCAAAGUG&UAUUUUGAUCGGAUCAAAAAU	2	0.997009610118473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN1269_c0_g1_4640_TPlot.pdf
TRINITY_DN126_c0_g2:470	si_s1	TRINITY_DN126_c0_g2	459	479	470	-18.70	-12.28	0.65668449197861	8.5	1-7,479-473;11-21,469-459	8-10,472-470[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	UAGUAGUAAGUCUGAUGAAAG&UUUUUAUAUUACUUAUUAUUA	4	0.999999999998924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN126_c0_g2_470_TPlot.pdf
TRINITY_DN126_c1_g1:8997	si_a784	TRINITY_DN126_c1_g1	8986	9009	8997	-24.70	-16.90	0.684210526315789	11	1-6,9009-9004;7-18,9000-8989	x-x,9003-9001[BULt];19-21,8988-8986[UP3]	...((((((((((((...((((((&))))))---))))))))))))...	UAUGUGGAAAAGUAGUUUAAGAGU&ACUCUU---CUAUUUUUCUAUUUU	4	0.999999999999344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN126_c1_g1_8997_TPlot.pdf
TRINITY_DN126_c1_g1:9122	si_s876	TRINITY_DN126_c1_g1	9111	9131	9122	-24.20	-16.10	0.665289256198347	7	1-4,9131-9128;7-8,9125-9124;10-20,9122-9112	5-6,9127-9126[SIL];9-9,9123-9123[SIL];21-21,9111-9111[UP3]	.(((((((((((.((..((((&))))..)).))))))))))).	UUUUAUUUUUAGGUCGUAGAC&GUCUUAGAACUAAAAAUAAAU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN126_c1_g1_9122_TPlot.pdf
TRINITY_DN126_c2_g1:1453	si_a769	TRINITY_DN126_c2_g1	1444	1462	1453	-26.70	-17.70	0.662921348314607	3	1-14,1462-1449;17-21,1448-1444	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	AAGAG--GAAUCAAUUAAAAA&UUUUUGAUUGAUUCAACUCUU	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN126_c2_g1_1453_TPlot.pdf
TRINITY_DN126_c2_g1:1738	si_a407	TRINITY_DN126_c2_g1	1727	1747	1738	-19.80	-13.10	0.661616161616162	9.5	2-8,1746-1740;10-18,1738-1730	1-1,1747-1747[UP5];9-9,1739-1739[SIL];19-21,1729-1727[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	CGGUAGAUAUGAUCGGAACAU&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN126_c2_g1_1738_TPlot.pdf
TRINITY_DN126_c2_g1:3425	si_a817	TRINITY_DN126_c2_g1	3414	3434	3425	-30.90	-22.70	0.73462783171521	5.5	1-16,3434-3419	17-21,3418-3414[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGGACUUCUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN126_c2_g1_3425_TPlot.pdf
TRINITY_DN126_c2_g1:490	si_a65	TRINITY_DN126_c2_g1	481	499	490	-27.70	-18.80	0.67870036101083	5.5	3-13,497-487;16-21,486-481	1-2,499-498[UP5];14-15,x-x[BULq]	((((((--(((((((((((..&..)))))))))))..))))))	AAAGCA--UUGAAAGAAGCUG&UCGCUUCUUUCAAAUUGUUUU	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN126_c2_g1_490_TPlot.pdf
TRINITY_DN126_c2_g1:703	si_s36	TRINITY_DN126_c2_g1	684	712	703	-25.00	-17.50	0.7	12	2-14,711-699;15-21,690-684	1-1,712-712[UP5];x-x,698-691[BULt]	(((((((........(((((((((((((.&.)))))))))))))--------)))))))	UCCGAUUCCCGAACGGUUAAGGAUUUGGG&ACUAAAUCUUUAAU--------AAUUGGA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN126_c2_g1_703_TPlot.pdf
TRINITY_DN126_c2_g2:601	si_a785	TRINITY_DN126_c2_g2	591	610	601	-25.90	-17.10	0.66023166023166	7.5	1-7,610-604;10-15,601-596;17-21,595-591	8-9,603-602[SIL];16-16,x-x[BULq]	(((((-((((((..(((((((&)))))))..)))))).)))))	GAAAG-AGAGAACCGGAAGAG&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN126_c2_g2_601_TPlot.pdf
TRINITY_DN126_c3_g2:416	si_s77	TRINITY_DN126_c3_g2	404	425	416	-25.50	-20.10	0.788235294117647	3	1-13,425-413;14-20,411-405	x-x,412-412[BULt];21-21,404-404[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	AAAGAAAGUGAAAGAAGAAAAA&UUUUUUUUCUUUC-CUUUCUUC	2	0.999835451332914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN126_c3_g2_416_TPlot.pdf
TRINITY_DN126_c3_g2:419	si_s74	TRINITY_DN126_c3_g2	407	428	419	-25.00	-20.70	0.828	3	2-16,427-413;17-21,411-407	1-1,428-428[UP5];x-x,412-412[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GAAAGUGAAAGAAGAAAAAUAA&CUAUUUUUUUUCUUUC-CUUUC	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN126_c3_g2_419_TPlot.pdf
TRINITY_DN126_c3_g2:420	si_s73	TRINITY_DN126_c3_g2	408	429	420	-24.00	-17.50	0.729166666666667	5	3-17,427-413;18-21,411-408	1-2,429-428[UP5];x-x,412-412[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	AAAGUGAAAGAAGAAAAAUAAU&UCUAUUUUUUUUCUUUC-CUUU	4	0.999999999999358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN126_c3_g2_420_TPlot.pdf
TRINITY_DN126_c3_g2:421	si_s72	TRINITY_DN126_c3_g2	409	430	421	-24.10	-16.60	0.688796680497925	7	4-18,427-413;19-21,411-409	1-3,430-428[UP5];x-x,412-412[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	AAGUGAAAGAAGAAAAAUAAUU&UUCUAUUUUUUUUCUUUC-CUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN126_c3_g2_421_TPlot.pdf
TRINITY_DN126_c5_g1:1011	si_a452	TRINITY_DN126_c5_g1	1000	1020	1011	-23.00	-15.40	0.669565217391304	10.5	2-15,1019-1006	1-1,1020-1020[UP5];16-21,1005-1000[UP3]	......((((((((((((((.&.))))))))))))))......	UACUUAGUAGCAGCAGUUAUA&GAUAAUUGUUGUUAUAUAUAA	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN126_c5_g1_1011_TPlot.pdf
TRINITY_DN126_c5_g1:1012	si_a451	TRINITY_DN126_c5_g1	1001	1021	1012	-23.60	-15.40	0.652542372881356	11	3-16,1019-1006	1-2,1021-1020[UP5];17-21,1005-1001[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACUUAGUAGCAGCAGUUAUAG&AGAUAAUUGUUGUUAUAUAUA	3	0.999997049065349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN126_c5_g1_1012_TPlot.pdf
TRINITY_DN126_c5_g1:1032	si_a787	TRINITY_DN126_c5_g1	1020	1042	1032	-26.30	-17.22	0.654752851711027	12.5	1-7,1042-1036;11-12,1031-1030;13-20,1028-1021	8-10,1035-1032[AILt];x-x,1029-1029[BULt];21-21,1020-1020[UP3]	.((((((((.((....(((((((&)))))))-...))-)))))))).	AGGAGAAUAUGAUUAUGUAGAAG&CUUCUAU-UUUUC-UAUUUUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN126_c5_g1_1032_TPlot.pdf
TRINITY_DN126_c5_g1:1033	si_a786	TRINITY_DN126_c5_g1	1021	1043	1033	-26.60	-18.12	0.681203007518797	10.5	1-8,1043-1036;12-13,1031-1030;14-21,1028-1021	9-11,1035-1032[AILt];x-x,1029-1029[BULt]	((((((((.((....((((((((&))))))))-...))-))))))))	GGAGAAUAUGAUUAUGUAGAAGA&UCUUCUAU-UUUUC-UAUUUUCC	3	0.999999999811082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN126_c5_g1_1033_TPlot.pdf
TRINITY_DN126_c5_g1:1316	si_s770	TRINITY_DN126_c5_g1	1305	1325	1316	-26.60	-21.60	0.81203007518797	7	2-13,1324-1313;15-20,1311-1306	1-1,1325-1325[UP5];14-14,1312-1312[SIL];21-21,1305-1305[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	GAUAGCAUUGGUAGUUGGUCA&CGAUUAAUUACUAUUGCUAUA	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN126_c5_g1_1316_TPlot.pdf
TRINITY_DN126_c5_g1:1318	si_s768	TRINITY_DN126_c5_g1	1307	1327	1318	-26.80	-20.00	0.746268656716418	9.5	4-15,1324-1313;17-21,1311-1307	1-3,1327-1325[UP5];16-16,1312-1312[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UAGCAUUGGUAGUUGGUCAUG&AACGAUUAAUUACUAUUGCUA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN126_c5_g1_1318_TPlot.pdf
TRINITY_DN126_c5_g1:1319	si_s767	TRINITY_DN126_c5_g1	1308	1328	1319	-28.10	-18.60	0.661921708185053	11.5	5-16,1324-1313;18-21,1311-1308	1-4,1328-1325[UP5];17-17,1312-1312[SIL]	((((.((((((((((((....&....)))))))))))).))))	AGCAUUGGUAGUUGGUCAUGA&CAACGAUUAAUUACUAUUGCU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN126_c5_g1_1319_TPlot.pdf
TRINITY_DN126_c5_g1:1637	si_s87	TRINITY_DN126_c5_g1	1626	1650	1637	-32.90	-23.40	0.711246200607903	11.5	1-9,1650-1642;10-14,1637-1633;16-20,1631-1627	x-x,1641-1638[BULt];15-15,1632-1632[SIL];21-21,1626-1626[UP3]	.(((((.(((((....(((((((((&)))))))))----))))).))))).	UGGCGAUGAAGAUUUCAGAAAGGGA&UUCCUUUCU----UCUUCUUCGCUU	2	0.999990832177071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN126_c5_g1_1637_TPlot.pdf
TRINITY_DN126_c5_g1:1642	si_s86	TRINITY_DN126_c5_g1	1627	1651	1642	-32.90	-24.10	0.732522796352584	10.5	1-10,1651-1642;11-15,1637-1633;17-21,1631-1627	x-x,1641-1638[BULt];16-16,1632-1632[SIL]	(((((.(((((....((((((((((&))))))))))----))))).)))))	GGCGAUGAAGAUUUCAGAAAGGGAA&UUUCCUUUCU----UCUUCUUCGCU	4	0.999992852258198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN126_c5_g1_1642_TPlot.pdf
TRINITY_DN126_c5_g1:1702	si_a18	TRINITY_DN126_c5_g1	1691	1711	1702	-26.30	-18.40	0.699619771863118	10	2-8,1710-1704;11-19,1701-1693	1-1,1711-1711[UP5];9-10,1703-1702[SIL];20-21,1692-1691[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	UUACUGAAGAUUUGUGGGCUG&AAGCCUAUUUAUUUUUAGUUC	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN126_c5_g1_1702_TPlot.pdf
TRINITY_DN126_c5_g1:1891	si_a314	TRINITY_DN126_c5_g1	1876	1900	1891	-27.10	-17.70	0.653136531365314	8.5	1-5,1900-1896;7-14,1894-1887;15-21,1882-1876	6-6,1895-1895[SIL];x-x,1886-1883[BULt]	(((((((....((((((((.(((((&))))).))))))))----)))))))	GAAGAUUACCUAUGGAUGAUUCCAA&UUGGAUUUAUCCAU----GAUUUUU	3	0.999999952528498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN126_c5_g1_1891_TPlot.pdf
TRINITY_DN126_c5_g1:2599	si_s69	TRINITY_DN126_c5_g1	2588	2608	2599	-23.40	-15.30	0.653846153846154	10	4-19,2605-2590	1-3,2608-2606[UP5];20-21,2589-2588[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUGAGGAAAAGGAUAGAAUCA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN126_c5_g1_2599_TPlot.pdf
TRINITY_DN126_c5_g1:5238	si_a148	TRINITY_DN126_c5_g1	5228	5247	5238	-30.30	-22.70	0.749174917491749	4	1-13,5247-5235;16-19,5233-5230	14-15,5234-5234[AILq];20-21,5229-5228[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	UCGACCA-AAAACAACAACGA&UCGUUGUUGUUUUAAGGUCAA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN126_c5_g1_5238_TPlot.pdf
TRINITY_DN126_c5_g1:5243	si_a143	TRINITY_DN126_c5_g1	5232	5253	5243	-25.10	-18.40	0.733067729083665	6	1-6,5253-5248;7-18,5246-5235	x-x,5247-5247[BULt];19-21,5234-5232[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CCAAAAACAACAACGAAUUGAU&AUUAAU-CGUUGUUGUUUUAAG	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN126_c5_g1_5243_TPlot.pdf
TRINITY_DN126_c5_g1:5246	si_a140	TRINITY_DN126_c5_g1	5235	5256	5246	-25.20	-18.40	0.73015873015873	8	4-9,5253-5248;10-21,5246-5235	1-3,5256-5254[UP5];x-x,5247-5247[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AAAACAACAACGAAUUGAUGAU&GUAAUUAAU-CGUUGUUGUUUU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN126_c5_g1_5246_TPlot.pdf
TRINITY_DN126_c5_g1:950	si_a447	TRINITY_DN126_c5_g1	939	963	950	-25.70	-16.80	0.653696498054475	14	1-8,963-956;9-17,951-943	x-x,955-952[BULt];18-21,942-939[UP3]	....(((((((((....((((((((&))))))))----)))))))))....	CAGUGCAGCAGUUGGAGAUCUCAUA&UAUGAGAU----AAUUGUUGUUAUA	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN126_c5_g1_950_TPlot.pdf
TRINITY_DN126_c6_g1:2345	si_a761	TRINITY_DN126_c6_g1	2334	2358	2345	-30.10	-20.20	0.67109634551495	15.5	1-9,2358-2350;10-15,2345-2340;18-20,2337-2335	x-x,2349-2346[BULt];16-17,2339-2338[SIL];21-21,2334-2334[UP3]	.(((..((((((....(((((((((&)))))))))----))))))..))).	UGUCCUUCAGGAUAUAGCCCAAGGG&CCUUUGGGU----UUUUGAUUGAUU	2	0.999948286724216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN126_c6_g1_2345_TPlot.pdf
TRINITY_DN126_c6_g1:245	si_a452	TRINITY_DN126_c6_g1	234	254	245	-23.00	-15.20	0.660869565217391	4	2-13,253-242;16-21,239-234	1-1,254-254[UP5];14-15,241-240[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UUAUAUUGAACAAUAAUUAUG&GAUAAUUGUUGUUAUAUAUAA	2	0.999407020573315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN126_c6_g1_245_TPlot.pdf
TRINITY_DN126_c6_g1:351	si_a195	TRINITY_DN126_c6_g1	340	361	351	-31.40	-21.60	0.687898089171975	7	2-6,360-356;7-11,354-350;13-21,348-340	1-1,361-361[UP5];x-x,355-355[BULt];12-12,349-349[SIL]	(((((((((.(((((.(((((.&.)))))-))))).)))))))))	GGUUUGUUAAUGAGCAAGGGAU&UUCCCU-GUUCACUAAUAAAUC	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a195_TRINITY_DN126_c6_g1_351_TPlot.pdf
TRINITY_DN12700_c0_g1:1211	si_s798	TRINITY_DN12700_c0_g1	1200	1220	1211	-29.30	-19.20	0.655290102389078	10	4-19,1217-1202	1-3,1220-1218[UP5];20-21,1201-1200[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAGAUGAAGAUAGAAUGCCUG&CUCGUAUUUUAUCUUCGUUAC	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN12700_c0_g1_1211_TPlot.pdf
TRINITY_DN12700_c0_g1:1212	si_s797	TRINITY_DN12700_c0_g1	1201	1221	1212	-30.00	-21.90	0.73	8	1-2,1221-1220;5-20,1217-1202	3-4,1219-1218[SIL];21-21,1201-1201[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	AGAUGAAGAUAGAAUGCCUGC&GCUCGUAUUUUAUCUUCGUUA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN12700_c0_g1_1212_TPlot.pdf
TRINITY_DN12700_c0_g1:1213	si_s796	TRINITY_DN12700_c0_g1	1202	1222	1213	-30.30	-22.50	0.742574257425743	7	1-3,1222-1220;6-21,1217-1202	4-5,1219-1218[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	GAUGAAGAUAGAAUGCCUGCU&AGCUCGUAUUUUAUCUUCGUU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN12700_c0_g1_1213_TPlot.pdf
TRINITY_DN12700_c0_g1:1215	si_s794	TRINITY_DN12700_c0_g1	1204	1224	1215	-31.20	-23.40	0.75	6.5	1-5,1224-1220;8-20,1217-1205	6-7,1219-1218[SIL];21-21,1204-1204[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	UGAAGAUAGAAUGCCUGCUUG&CAAGCUCGUAUUUUAUCUUCG	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN12700_c0_g1_1215_TPlot.pdf
TRINITY_DN12700_c0_g1:1218	si_s791	TRINITY_DN12700_c0_g1	1207	1227	1218	-28.50	-19.40	0.680701754385965	10.5	4-8,1224-1220;11-21,1217-1207	1-3,1227-1225[UP5];9-10,1219-1218[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	AGAUAGAAUGCCUGCUUGCAG&AAACAAGCUCGUAUUUUAUCU	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN12700_c0_g1_1218_TPlot.pdf
TRINITY_DN12700_c0_g1:1219	si_s790	TRINITY_DN12700_c0_g1	1208	1228	1219	-27.80	-18.10	0.651079136690648	12	5-9,1224-1220;12-21,1217-1208	1-4,1228-1225[UP5];10-11,1219-1218[SIL]	((((((((((..(((((....&....)))))..))))))))))	GAUAGAAUGCCUGCUUGCAGU&AAAACAAGCUCGUAUUUUAUC	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN12700_c0_g1_1219_TPlot.pdf
TRINITY_DN12700_c0_g1:1227	si_s22	TRINITY_DN12700_c0_g1	1216	1236	1227	-26.70	-19.70	0.737827715355805	8	1-15,1236-1222	16-21,1221-1216[UP3]	......(((((((((((((((&)))))))))))))))......	GCCUGCUUGCAGUCGAUAUAG&CUAUAUUGAUUGCAACUAAAU	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN12700_c0_g1_1227_TPlot.pdf
TRINITY_DN12700_c0_g1:1229	si_s20	TRINITY_DN12700_c0_g1	1218	1238	1229	-27.80	-19.70	0.70863309352518	9	3-17,1236-1222	1-2,1238-1237[UP5];18-21,1221-1218[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUGCUUGCAGUCGAUAUAGAU&UACUAUAUUGAUUGCAACUAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN12700_c0_g1_1229_TPlot.pdf
TRINITY_DN12700_c0_g1:1230	si_s19	TRINITY_DN12700_c0_g1	1219	1239	1230	-27.80	-19.70	0.70863309352518	9.5	4-18,1236-1222	1-3,1239-1237[UP5];19-21,1221-1219[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGCUUGCAGUCGAUAUAGAUG&UUACUAUAUUGAUUGCAACUA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN12700_c0_g1_1230_TPlot.pdf
TRINITY_DN12700_c0_g1:1231	si_s18	TRINITY_DN12700_c0_g1	1220	1240	1231	-27.50	-19.70	0.716363636363636	10.5	5-19,1236-1222	1-4,1240-1237[UP5];20-21,1221-1220[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCUUGCAGUCGAUAUAGAUGC&AUUACUAUAUUGAUUGCAACU	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN12700_c0_g1_1231_TPlot.pdf
TRINITY_DN12700_c0_g1:1232	si_s17	TRINITY_DN12700_c0_g1	1221	1241	1232	-27.20	-19.70	0.724264705882353	11.5	6-20,1236-1222	1-5,1241-1237[UP5];21-21,1221-1221[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUUGCAGUCGAUAUAGAUGCU&UAUUACUAUAUUGAUUGCAAC	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN12700_c0_g1_1232_TPlot.pdf
TRINITY_DN12700_c0_g1:1233	si_s16	TRINITY_DN12700_c0_g1	1222	1242	1233	-25.60	-19.70	0.76953125	12	7-21,1236-1222	1-6,1242-1237[UP5]	(((((((((((((((......&......)))))))))))))))	UUGCAGUCGAUAUAGAUGCUG&UUAUUACUAUAUUGAUUGCAA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN12700_c0_g1_1233_TPlot.pdf
TRINITY_DN12700_c0_g1:1235	si_s14	TRINITY_DN12700_c0_g1	1224	1244	1235	-25.30	-17.30	0.683794466403162	16	9-21,1236-1224	1-8,1244-1237[UP5]	(((((((((((((........&........)))))))))))))	GCAGUCGAUAUAGAUGCUGUU&UAUUAUUACUAUAUUGAUUGC	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN12700_c0_g1_1235_TPlot.pdf
TRINITY_DN12703_c0_g1:154	si_a676	TRINITY_DN12703_c0_g1	143	165	154	-34.00	-23.00	0.676470588235294	9.5	1-4,165-162;5-9,160-156;10-19,154-145	x-x,161-161[BULt];x-x,155-155[BULt];20-21,144-143[UP3]	..((((((((((.(((((.((((&))))-)))))-))))))))))..	CCAGCCGCGUGAUAUGGGUGAGU&AUUC-CUUAU-UCACGCGGUUUC	0	0.0690432661067506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN12703_c0_g1_154_TPlot.pdf
TRINITY_DN12706_c0_g3:679	si_a21	TRINITY_DN12706_c0_g3	668	688	679	-24.30	-16.60	0.683127572016461	6.5	2-14,687-675;16-19,673-670	1-1,688-688[UP5];15-15,674-674[SIL];20-21,669-668[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UGGGAAGUAAAAAUGGAUAGC&CCUAUUUAUUUUUAGUUCUAA	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN12706_c0_g3_679_TPlot.pdf
TRINITY_DN1270_c0_g1:2909	si_s830	TRINITY_DN1270_c0_g1	2898	2918	2909	-23.90	-15.80	0.661087866108787	8	4-12,2915-2907;15-21,2904-2898	1-3,2918-2916[UP5];13-14,2906-2905[SIL]	(((((((..(((((((((...&...)))))))))..)))))))	UCUUUCAUCUUGUUUUUUGAC&AAUGAAAAACAAUUUGAAAGA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN1270_c0_g1_2909_TPlot.pdf
TRINITY_DN1270_c0_g1:818	si_s126	TRINITY_DN1270_c0_g1	805	827	818	-29.20	-19.00	0.650684931506849	9	4-14,824-814;15-20,811-806	1-3,827-825[UP5];x-x,813-812[BULt];21-21,805-805[UP3]	.((((((..(((((((((((...&...)))))))))))--)))))).	UGUUGGUGAUCAACUCUUCUUGC&AAUAGAAGAGUUGA--AUCAAUC	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN1270_c0_g1_818_TPlot.pdf
TRINITY_DN1270_c1_g1:2771	si_a71	TRINITY_DN1270_c1_g1	2760	2780	2771	-23.30	-15.80	0.678111587982833	7	1-6,2780-2775;8-19,2773-2762	7-7,2774-2774[SIL];20-21,2761-2760[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AUAUGGAGAAUGAUCUGAAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.99999999585186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1270_c1_g1_2771_TPlot.pdf
TRINITY_DN12719_c0_g1:67	si_s123	TRINITY_DN12719_c0_g1	56	76	67	-27.00	-18.90	0.7	5.5	3-15,74-62;17-18,60-59;20-21,57-56	1-2,76-75[UP5];16-16,61-61[SIL];19-19,58-58[SIL]	((.((.(((((((((((((..&..))))))))))))).)).))	UGUUUGGACUCUUCUAUUUCU&AAAAAUAGAAGAGUUGAAUCA	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN12719_c0_g1_67_TPlot.pdf
TRINITY_DN12720_c0_g1:65	si_a556	TRINITY_DN12720_c0_g1	54	74	65	-33.40	-23.90	0.715568862275449	12.5	5-6,70-69;8-19,67-56	1-4,74-71[UP5];7-7,68-68[SIL];20-21,55-54[UP3]	..((((((((((((.((....&....)).))))))))))))..	UCCGCGGGGAGAUAUGGCCCA&AUUUCUUUAUCUCCCCGUGAA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN12720_c0_g1_65_TPlot.pdf
TRINITY_DN12721_c0_g1:2065	si_s79	TRINITY_DN12721_c0_g1	2054	2074	2065	-26.20	-19.10	0.729007633587786	7.5	3-16,2072-2059;19-21,2056-2054	1-2,2074-2073[UP5];17-18,2058-2057[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	GGGUCGAGAGGAAAGAAAGCG&UUUUUUCUUUCCUUUCUUCUU	2	0.999999999954326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12721_c0_g1_2065_TPlot.pdf
TRINITY_DN12721_c0_g1:3343	si_s71	TRINITY_DN12721_c0_g1	3332	3352	3343	-25.70	-21.20	0.824902723735409	8	1-8,3352-3345;11-20,3342-3333	9-10,3344-3343[SIL];21-21,3332-3332[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	UGGGAAGGAAAUUGAUAGGAG&CUUCUAUUUUUUUUCUUUCCU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12721_c0_g1_3343_TPlot.pdf
TRINITY_DN12721_c0_g1:3612	si_s91	TRINITY_DN12721_c0_g1	3601	3622	3612	-34.70	-22.80	0.657060518731988	5.5	1-6,3622-3617;7-12,3615-3610;14-21,3608-3601	x-x,3616-3616[BULt];13-13,3609-3609[SIL]	((((((((.((((((.((((((&))))))-)))))).))))))))	UCUGAGGCUAAGGAGCAAGAAG&UUUCUU-CUUCUUCGCUUCGGA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN12721_c0_g1_3612_TPlot.pdf
TRINITY_DN12721_c0_g1:3634	si_s291	TRINITY_DN12721_c0_g1	3623	3643	3634	-38.10	-25.40	0.666666666666667	9	1-3,3643-3641;6-6,3638-3638;8-8,3636-3636;10-21,3634-3623	4-5,3640-3639[SIL];7-7,3637-3637[SIL];9-9,3635-3635[SIL]	((((((((((((.(.(..(((&)))..).).))))))))))))	CGUAGUUCCAAUGGUCCUGGC&GCCUAGUCGAUUGGAAUUGCG	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN12721_c0_g1_3634_TPlot.pdf
TRINITY_DN12721_c0_g1:3932	si_a756	TRINITY_DN12721_c0_g1	3921	3941	3932	-33.10	-22.30	0.673716012084592	9	3-17,3939-3925	1-2,3941-3940[UP5];18-21,3924-3921[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACGCAAAACUCAAAGGGGGGG&AACCUCCUUUGGGUUUUUGAU	4	0.999999387155625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN12721_c0_g1_3932_TPlot.pdf
TRINITY_DN12721_c0_g2:1793	si_a217	TRINITY_DN12721_c0_g2	1782	1802	1793	-27.00	-18.00	0.666666666666667	13.5	7-21,1796-1782	1-6,1802-1797[UP5]	(((((((((((((((......&......)))))))))))))))	AGAGGCGUGGGUUUACGAGGC&ACUAAUUAAACUCAUGUUUCU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a217_TRINITY_DN12721_c0_g2_1793_TPlot.pdf
TRINITY_DN12729_c1_g2:1020	si_a440	TRINITY_DN12729_c1_g2	1009	1031	1020	-30.80	-21.90	0.711038961038961	8	2-8,1030-1024;9-19,1021-1011	1-1,1031-1031[UP5];x-x,1023-1022[BULt];20-21,1010-1009[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	UAAAUUAUCUCAUGUGUCCAACA&CGUUGGAU--AUGAGAUAAUUGU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN12729_c1_g2_1020_TPlot.pdf
TRINITY_DN12729_c1_g2:273	si_a495	TRINITY_DN12729_c1_g2	262	282	273	-31.90	-20.80	0.652037617554859	11.5	5-15,278-268;17-20,266-263	1-4,282-279[UP5];16-16,267-267[SIL];21-21,262-262[UP3]	.((((.(((((((((((....&....))))))))))).)))).	UGAAGUCGGAGAACGGCGAAA&AUAUGUCGUUUUUCGUCUUCC	4	0.999999999999741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN12729_c1_g2_273_TPlot.pdf
TRINITY_DN1272_c0_g1:3131	si_a149	TRINITY_DN1272_c0_g1	3119	3140	3131	-29.40	-19.20	0.653061224489796	9.5	2-12,3139-3129;15-20,3125-3120	1-1,3140-3140[UP5];13-14,3128-3126[AILt];21-21,3119-3119[UP3]	.((((((...(((((((((((.&.)))))))))))-..)))))).	CUUGGCCGCAAAAGCAAUAGCA&CGUUGUUGUUUU-AAGGUCAAU	4	0.999999998772768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1272_c0_g1_3131_TPlot.pdf
TRINITY_DN1272_c0_g1:5625	si_a68	TRINITY_DN1272_c0_g1	5614	5635	5625	-25.40	-17.00	0.669291338582677	8	1-7,5635-5629;8-8,5627-5627;11-20,5624-5615	x-x,5628-5628[BULt];9-10,5626-5625[SIL];21-21,5614-5614[UP3]	.((((((((((..(.(((((((&)))))))-)..)))))))))).	AGAGAGACAAUCAGCAAAGAAG&CUUCUUU-CAAAUUGUUUUUCA	4	0.999999999974148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1272_c0_g1_5625_TPlot.pdf
TRINITY_DN12731_c0_g1:1919	si_s431	TRINITY_DN12731_c0_g1	1908	1928	1919	-21.10	-13.90	0.658767772511848	9.5	4-7,1925-1922;9-19,1920-1910	1-3,1928-1926[UP5];8-8,1921-1921[SIL];20-21,1909-1908[UP3]	..(((((((((((.((((...&...)))).)))))))))))..	UAGAUAUGUAAUUUUUGUAGG&AUAACAAUAAUUACAUAUUAU	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN12731_c0_g1_1919_TPlot.pdf
TRINITY_DN12731_c0_g1:1920	si_s430	TRINITY_DN12731_c0_g1	1909	1929	1920	-21.30	-13.90	0.652582159624413	10.5	5-8,1925-1922;10-20,1920-1910	1-4,1929-1926[UP5];9-9,1921-1921[SIL];21-21,1909-1909[UP3]	.(((((((((((.((((....&....)))).))))))))))).	AGAUAUGUAAUUUUUGUAGGU&UAUAACAAUAAUUACAUAUUA	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN12731_c0_g1_1920_TPlot.pdf
TRINITY_DN12731_c2_g4:187	si_a484	TRINITY_DN12731_c2_g4	175	196	187	-27.30	-18.00	0.659340659340659	6.5	2-6,195-191;8-12,189-185;13-21,183-175	1-1,196-196[UP5];7-7,190-190[SIL];x-x,184-184[BULt]	(((((((((.(((((.(((((.&.))))).)))))-)))))))))	AGCGGCGUAUUUCUACAUAACC&UGUUAUAUAGAA-UAUGUCGUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN12731_c2_g4_187_TPlot.pdf
TRINITY_DN12734_c0_g1:430	si_s437	TRINITY_DN12734_c0_g1	418	439	430	-19.70	-15.00	0.761421319796954	3	1-13,439-427;15-21,424-418	14-14,426-425[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	UUAUAUAAAAAUAUGUGAUUAU&AUAAUUACAUAUU-AUAUAUAA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN12734_c0_g1_430_TPlot.pdf
TRINITY_DN12736_c0_g1:104	si_s7	TRINITY_DN12736_c0_g1	93	115	104	-21.70	-14.90	0.686635944700461	9.5	3-6,113-110;7-21,107-93	1-2,115-114[UP5];x-x,109-108[BULt]	(((((((((((((((..((((..&..))))--)))))))))))))))	AUAUAGUAGUAAUAGCUGUGACG&UAUUAC--UUAUUAUUACUAUAU	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN12736_c0_g1_104_TPlot.pdf
TRINITY_DN12736_c1_g1:2406	si_a320	TRINITY_DN12736_c1_g1	2394	2415	2406	-24.40	-17.10	0.700819672131148	9	4-12,2412-2404;13-21,2402-2394	1-3,2415-2413[UP5];x-x,2403-2403[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GAAUAAGAGCAAUUAUGGAAAA&UUAUCCAUGAUU-UUUUUAUUC	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN12736_c1_g1_2406_TPlot.pdf
TRINITY_DN12736_c1_g2:283	si_a201	TRINITY_DN12736_c1_g2	273	292	283	-28.60	-19.70	0.688811188811189	4.5	1-14,292-279;16-19,278-275	15-15,x-x[BULq];20-21,274-273[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	UGAGUU-AUUUGUUAGUGAAC&GUUCACUAAUAAAUCGACUAA	1	0.0115138086804299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN12736_c1_g2_283_TPlot.pdf
TRINITY_DN12744_c0_g1:151	si_a640	TRINITY_DN12744_c0_g1	140	160	151	-24.10	-15.88	0.658921161825726	9.5	2-5,159-156;9-21,152-140	1-1,160-160[UP5];6-8,155-153[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	GGUAUGUUGCUCAUCCAGAUA&GAUUUUUUUGAGUAAUAUAUC	2	0.999311501258161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN12744_c0_g1_151_TPlot.pdf
TRINITY_DN1274_c0_g1:526	si_a637	TRINITY_DN1274_c0_g1	515	535	526	-25.80	-17.90	0.693798449612403	12.5	1-5,535-531;8-16,528-520	6-7,530-529[SIL];17-21,519-515[UP3]	.....(((((((((..(((((&)))))..))))))))).....	UCACAGCUCGAGAAUUUCGGC&GUCGAUUUUUUUGAGUAAUAU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN1274_c0_g1_526_TPlot.pdf
TRINITY_DN1274_c0_g1:530	si_a633	TRINITY_DN1274_c0_g1	519	539	530	-26.40	-17.90	0.678030303030303	14.5	5-9,535-531;12-20,528-520	1-4,539-536[UP5];10-11,530-529[SIL];21-21,519-519[UP3]	.(((((((((..(((((....&....)))))..))))))))).	AGCUCGAGAAUUUCGGCCCCG&UUAUGUCGAUUUUUUUGAGUA	3	0.999999450154812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1274_c0_g1_530_TPlot.pdf
TRINITY_DN1274_c0_g1:557	si_a380	TRINITY_DN1274_c0_g1	541	566	557	-24.00	-16.20	0.675	11.5	3-13,564-554;14-20,548-542	1-2,566-565[UP5];x-x,553-549[BULt];21-21,541-541[UP3]	.(((((((.....(((((((((((..&..)))))))))))-----))))))).	CUUCUUGAGCCGCUUCGAAGUCGUCC&AAAUGAUUUCGAA-----UUAAGAAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN1274_c0_g1_557_TPlot.pdf
TRINITY_DN12753_c0_g1:393	si_a201	TRINITY_DN12753_c0_g1	382	402	393	-28.60	-20.00	0.699300699300699	6.5	1-9,402-394;11-13,392-390;15-21,388-382	10-10,393-393[SIL];14-14,389-389[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	UUGGUCGUUUUCUUGGUGGGC&GUUCACUAAUAAAUCGACUAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN12753_c0_g1_393_TPlot.pdf
TRINITY_DN12753_c3_g1:124	si_s829	TRINITY_DN12753_c3_g1	113	133	124	-23.30	-18.50	0.793991416309013	8	5-21,129-113	1-4,133-130[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUCAAGUUGUUUUUCGAAA&UAAUGAAAAACAAUUUGAAAG	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s829_TRINITY_DN12753_c3_g1_124_TPlot.pdf
TRINITY_DN12754_c0_g3:109	si_a627	TRINITY_DN12754_c0_g3	98	125	109	-29.50	-19.90	0.674576271186441	20	1-8,125-118;9-17,110-102	x-x,117-111[BULt];18-21,101-98[UP3]	....(((((((((.......((((((((&))))))))-------)))))))))....	GAGCGGUCGACGUUGCGAAGAAUACGCC&GGCGUAUU-------AUGUCGAUUUUUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN12754_c0_g3_109_TPlot.pdf
TRINITY_DN12754_c0_g3:110	si_a626	TRINITY_DN12754_c0_g3	99	126	110	-30.20	-21.00	0.695364238410596	19	1-9,126-118;10-18,110-102	x-x,117-111[BULt];19-21,101-99[UP3]	...(((((((((.......(((((((((&)))))))))-------)))))))))...	AGCGGUCGACGUUGCGAAGAAUACGCCU&AGGCGUAUU-------AUGUCGAUUUUU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN12754_c0_g3_110_TPlot.pdf
TRINITY_DN12754_c0_g3:118	si_a625	TRINITY_DN12754_c0_g3	100	127	118	-30.60	-21.00	0.686274509803922	19	2-10,126-118;11-19,110-102	1-1,127-127[UP5];x-x,117-111[BULt];20-21,101-100[UP3]	..(((((((((.......(((((((((.&.)))))))))-------)))))))))..	GCGGUCGACGUUGCGAAGAAUACGCCUU&UAGGCGUAUU-------AUGUCGAUUUU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN12754_c0_g3_118_TPlot.pdf
TRINITY_DN12754_c0_g3:119	si_a624	TRINITY_DN12754_c0_g3	101	128	119	-32.30	-21.00	0.65015479876161	19.5	3-11,126-118;12-20,110-102	1-2,128-127[UP5];x-x,117-111[BULt];21-21,101-101[UP3]	.(((((((((.......(((((((((..&..)))))))))-------))))))))).	CGGUCGACGUUGCGAAGAAUACGCCUUC&CUAGGCGUAUU-------AUGUCGAUUU	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN12754_c0_g3_119_TPlot.pdf
TRINITY_DN12755_c0_g1:885	si_a359	TRINITY_DN12755_c0_g1	874	893	885	-29.20	-19.80	0.678082191780822	7.5	2-5,892-889;7-19,888-876	1-1,893-893[UP5];6-6,x-x[BULq];20-21,875-874[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	AGGAUCUGAUCGAAG-AGAAC&AUUCUAUUUUGAUCGGAUCAA	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN12755_c0_g1_885_TPlot.pdf
TRINITY_DN12755_c0_g2:821	si_s803	TRINITY_DN12755_c0_g2	809	830	821	-26.00	-17.80	0.684615384615385	11	3-15,828-816;16-19,814-811	1-2,830-829[UP5];x-x,815-815[BULt];20-21,810-809[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	GCAAGGCUGGCGAGGAUGGGUC&AUUUUAUCUUCGUUA-CCUUUU	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12755_c0_g2_821_TPlot.pdf
TRINITY_DN12755_c0_g2:822	si_s802	TRINITY_DN12755_c0_g2	810	831	822	-26.40	-17.80	0.674242424242424	12	4-16,828-816;17-20,814-811	1-3,831-829[UP5];x-x,815-815[BULt];21-21,810-810[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	CAAGGCUGGCGAGGAUGGGUCG&UAUUUUAUCUUCGUUA-CCUUU	3	0.999999989386956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN12755_c0_g2_822_TPlot.pdf
TRINITY_DN12756_c0_g1:1178	si_a596	TRINITY_DN12756_c0_g1	1166	1187	1178	-32.30	-23.60	0.730650154798762	7	2-14,1186-1174;15-17,1172-1170	1-1,1187-1187[UP5];x-x,1173-1173[BULt];18-21,1169-1166[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	AGCCUGCGGAGAAUUCUGUCCG&AGGACAGAAUUUUC-GCAAUUC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN12756_c0_g1_1178_TPlot.pdf
TRINITY_DN12756_c0_g1:546	si_a429	TRINITY_DN12756_c0_g1	529	555	546	-32.00	-20.80	0.65	20	3-12,553-544;13-18,537-532	1-2,555-554[UP5];x-x,543-538[BULt];19-21,531-529[UP3]	...((((((......((((((((((..&..))))))))))------))))))...	UCUUCCAACCAAUAGGGAUCCUGUGCU&AAUAUAGGAUCC------GUUGGAUAU	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN12756_c0_g1_546_TPlot.pdf
TRINITY_DN1276_c0_g1:1160	si_a154	TRINITY_DN1276_c0_g1	1148	1169	1160	-27.00	-17.80	0.659259259259259	7	1-10,1169-1160;11-13,1158-1156;16-21,1153-1148	x-x,1159-1159[BULt];14-15,1155-1154[SIL]	((((((..(((.((((((((((&))))))))))-)))..))))))	GGUAGAGGGACUUUUGAAACAA&UUGUUUUAAG-GUCAAUCUAUU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN1276_c0_g1_1160_TPlot.pdf
TRINITY_DN1276_c0_g1:1710	si_a68	TRINITY_DN1276_c0_g1	1699	1719	1710	-25.40	-17.90	0.704724409448819	7.5	1-7,1719-1713;9-20,1711-1700	8-8,1712-1712[SIL];21-21,1699-1699[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	CGGAGGGCGAUUUCGAAGAGG&CUUCUUUCAAAUUGUUUUUCA	3	0.999985974189315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1276_c0_g1_1710_TPlot.pdf
TRINITY_DN1276_c0_g1:1711	si_a67	TRINITY_DN1276_c0_g1	1700	1720	1711	-27.20	-21.80	0.801470588235294	6.5	1-8,1720-1713;10-21,1711-1700	9-9,1712-1712[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	GGAGGGCGAUUUCGAAGAGGC&GCUUCUUUCAAAUUGUUUUUC	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1276_c0_g1_1711_TPlot.pdf
TRINITY_DN1276_c0_g1:1712	si_a66	TRINITY_DN1276_c0_g1	1701	1721	1712	-26.70	-21.10	0.790262172284644	6.5	1-9,1721-1713;11-21,1711-1701	10-10,1712-1712[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GAGGGCGAUUUCGAAGAGGCG&CGCUUCUUUCAAAUUGUUUUU	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1276_c0_g1_1712_TPlot.pdf
TRINITY_DN1276_c0_g1:1713	si_a65	TRINITY_DN1276_c0_g1	1702	1722	1713	-27.70	-19.80	0.714801444043321	7	2-10,1721-1713;12-21,1711-1702	1-1,1722-1722[UP5];11-11,1712-1712[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AGGGCGAUUUCGAAGAGGCGU&UCGCUUCUUUCAAAUUGUUUU	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN1276_c0_g1_1713_TPlot.pdf
TRINITY_DN1276_c0_g1:1891	si_s618	TRINITY_DN1276_c0_g1	1876	1900	1891	-30.30	-20.20	0.666666666666667	15	4-10,1897-1891;11-20,1886-1877	1-3,1900-1898[UP5];x-x,1890-1887[BULt];21-21,1876-1876[UP3]	.((((((((((....(((((((...&...)))))))----)))))))))).	AGAGAGAUCGCAUCAUUGGAUUAUU&UUAAAUCCAA----GCGAUCUUUUC	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN1276_c0_g1_1891_TPlot.pdf
TRINITY_DN1276_c0_g1:1931	si_s42	TRINITY_DN1276_c0_g1	1919	1940	1931	-24.90	-16.30	0.654618473895582	6.5	1-13,1940-1928;16-21,1924-1919	14-15,1927-1925[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	UUGGAGGCACGAUUAUUGAAGG&UCUUUAAUAAUUG-GAUUUCAA	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN1276_c0_g1_1931_TPlot.pdf
TRINITY_DN1276_c0_g1:672	si_a627	TRINITY_DN1276_c0_g1	661	680	672	-29.50	-19.20	0.650847457627119	11	1-4,680-677;6-14,676-668	5-5,x-x[BULq];15-21,667-661[UP3]	.......(((((((((-((((&)))).))))))))).......	UCCCCGCCGACAUGGU-CGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.999999986265417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN1276_c0_g1_672_TPlot.pdf
TRINITY_DN1276_c0_g1:930	si_a492	TRINITY_DN1276_c0_g1	917	939	930	-30.20	-22.00	0.728476821192053	9	2-12,938-928;13-19,925-919	1-1,939-939[UP5];x-x,927-926[BULt];20-21,918-917[UP3]	..(((((((..(((((((((((.&.)))))))))))--)))))))..	CAGCGAAGAUCACGACAUGUUCA&AGAAUAUGUCGU--UUUUCGUCU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN1276_c0_g1_930_TPlot.pdf
TRINITY_DN1276_c0_g1:932	si_a490	TRINITY_DN1276_c0_g1	919	941	932	-28.10	-21.80	0.775800711743772	9	4-14,938-928;15-21,925-919	1-3,941-939[UP5];x-x,927-926[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GCGAAGAUCACGACAUGUUCAUC&AUAGAAUAUGUCGU--UUUUCGU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN1276_c0_g1_932_TPlot.pdf
TRINITY_DN1276_c0_g1:933	si_a489	TRINITY_DN1276_c0_g1	920	942	933	-27.70	-20.40	0.736462093862816	10.5	5-15,938-928;16-21,925-920	1-4,942-939[UP5];x-x,927-926[BULt]	((((((..(((((((((((....&....)))))))))))--))))))	CGAAGAUCACGACAUGUUCAUCG&UAUAGAAUAUGUCGU--UUUUCG	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN1276_c0_g1_933_TPlot.pdf
TRINITY_DN12777_c0_g1:1068	si_a892	TRINITY_DN12777_c0_g1	1057	1077	1068	-21.30	-14.40	0.676056338028169	8	1-13,1077-1065;16-19,1062-1059	14-15,1064-1063[SIL];20-21,1058-1057[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	CGUACUGUUUGUUAUUGUGUU&AAUAUAGUAAUAAUAAGUAAU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN12777_c0_g1_1068_TPlot.pdf
TRINITY_DN12777_c0_g1:1588	si_a487	TRINITY_DN12777_c0_g1	1571	1597	1588	-24.80	-17.00	0.685483870967742	15	1-12,1597-1586;13-19,1579-1573	x-x,1585-1580[BULt];20-21,1572-1571[UP3]	..(((((((......((((((((((((&))))))))))))------)))))))..	GCAGACGACUUUAUUAUAUUCUAUAUG&UAUAUAGAAUAU------GUCGUUUUU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN12777_c0_g1_1588_TPlot.pdf
TRINITY_DN12778_c0_g1:12	si_s84	TRINITY_DN12778_c0_g1	1	23	12	-32.30	-27.50	0.851393188854489	4	1-6,23-18;7-21,15-1	x-x,17-16[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	CGAAGAAGAAGAAAGAAGAAAGA&UCUUUC--CUUUCUUCUUCUUCG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN12778_c0_g1_12_TPlot.pdf
TRINITY_DN12778_c0_g1:13	si_s83	TRINITY_DN12778_c0_g1	2	24	13	-30.90	-26.60	0.86084142394822	4	1-7,24-18;8-21,15-2	x-x,17-16[BULt]	((((((((((((((..(((((((&)))))))--))))))))))))))	GAAGAAGAAGAAAGAAGAAAGAA&UUCUUUC--CUUUCUUCUUCUUC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN12778_c0_g1_13_TPlot.pdf
TRINITY_DN12778_c0_g1:15	si_s81	TRINITY_DN12778_c0_g1	4	26	15	-28.90	-22.80	0.788927335640139	6	2-9,25-18;10-21,15-4	1-1,26-26[UP5];x-x,17-16[BULt]	((((((((((((..((((((((.&.))))))))--))))))))))))	AGAAGAAGAAAGAAGAAAGAAGU&UUUUCUUUC--CUUUCUUCUUCU	3	0.999859008526984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN12778_c0_g1_15_TPlot.pdf
TRINITY_DN12780_c0_g1:4682	si_a20	TRINITY_DN12780_c0_g1	4671	4694	4682	-26.70	-19.50	0.730337078651685	10.5	1-3,4694-4692;4-20,4688-4672	x-x,4691-4689[BULt];21-21,4671-4671[UP3]	.(((((((((((((((((...(((&)))---))))))))))))))))).	AAGAAUUGGAAAUGAGUAAAUGGC&GCC---UAUUUAUUUUUAGUUCUA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN12780_c0_g1_4682_TPlot.pdf
TRINITY_DN12780_c0_g1:4683	si_a19	TRINITY_DN12780_c0_g1	4672	4695	4683	-27.00	-19.30	0.714814814814815	10.5	2-4,4694-4692;5-21,4688-4672	1-1,4695-4695[UP5];x-x,4691-4689[BULt]	(((((((((((((((((...(((.&.)))---)))))))))))))))))	AGAAUUGGAAAUGAGUAAAUGGCA&AGCC---UAUUUAUUUUUAGUUCU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN12780_c0_g1_4683_TPlot.pdf
TRINITY_DN12780_c0_g1:4808	si_a786	TRINITY_DN12780_c0_g1	4797	4818	4808	-26.60	-18.48	0.694736842105263	13.5	1-7,4818-4812;13-21,4805-4797	8-12,4811-4806[AILt]	(((((((((......(((((((&)))))))-.....)))))))))	GGAAGAUAGUACUUUUAGAGGA&UCUUCUA-UUUUUCUAUUUUCC	4	0.999999982764298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN12780_c0_g1_4808_TPlot.pdf
TRINITY_DN12780_c0_g1:765	si_a142	TRINITY_DN12780_c0_g1	754	774	765	-23.50	-16.90	0.719148936170213	14.5	7-19,768-756	1-6,774-769[UP5];20-21,755-754[UP3]	..(((((((((((((......&......)))))))))))))..	AAGAAGCGACAACGAAUCCGA&AAUUAAUCGUUGUUGUUUUAA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN12780_c0_g1_765_TPlot.pdf
TRINITY_DN12780_c0_g1:767	si_a140	TRINITY_DN12780_c0_g1	756	776	767	-25.20	-16.40	0.650793650793651	16.5	9-21,768-756	1-8,776-769[UP5]	(((((((((((((........&........)))))))))))))	GAAGCGACAACGAAUCCGACA&GUAAUUAAUCGUUGUUGUUUU	3	0.999999999623995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN12780_c0_g1_767_TPlot.pdf
TRINITY_DN12781_c0_g1:590	si_a67	TRINITY_DN12781_c0_g1	579	599	590	-27.20	-19.60	0.720588235294118	5	1-12,599-588;14-20,586-580	13-13,587-587[SIL];21-21,579-579[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AGAAGAUGUUUUGGAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN12781_c0_g1_590_TPlot.pdf
TRINITY_DN12784_c0_g2:259	si_a491	TRINITY_DN12784_c0_g2	250	268	259	-29.90	-19.50	0.652173913043478	4	1-11,268-258;14-18,257-253;20-21,251-250	12-13,x-x[BULq];19-19,252-252[SIL]	((.(((((--(((((((((((&)))))))))))..))))).))	GAGGAAAA--GACAUAUUCUA&UAGAAUAUGUCGUUUUUCGUC	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN12784_c0_g2_259_TPlot.pdf
TRINITY_DN12789_c1_g1:31	si_a66	TRINITY_DN12789_c1_g1	19	40	31	-26.70	-19.00	0.711610486891386	7	2-12,39-29;14-19,26-21	1-1,40-40[UP5];13-13,28-27[AILt];20-21,20-19[UP3]	..((((((..(((((((((((.&.)))))))))))-.))))))..	GCAAACAAACUUGAGAGAAGCA&CGCUUCUUUCAA-AUUGUUUUU	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN12789_c1_g1_31_TPlot.pdf
TRINITY_DN12791_c4_g1:149	si_a664	TRINITY_DN12791_c4_g1	138	160	149	-29.60	-20.00	0.675675675675676	14	4-8,157-153;10-20,149-139	1-3,160-158[UP5];9-9,152-150[AILt];21-21,138-138[UP3]	.(((((((((((...(((((...&...)))))--.))))))))))).	CUGAGGAGUCGAGAAAGGCAGGA&AAAUGCCU--AUUGAUUCCUUAU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN12791_c4_g1_149_TPlot.pdf
TRINITY_DN12797_c0_g1:40	si_s434	TRINITY_DN12797_c0_g1	29	49	40	-21.50	-14.00	0.651162790697674	9.5	1-13,49-37	14-21,36-29[UP3]	........(((((((((((((&)))))))))))))........	CAAAUUUAGUGUGAUUAUUGU&ACAAUAAUUACAUAUUAUAUA	4	0.999356558738347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN12797_c0_g1_40_TPlot.pdf
TRINITY_DN12797_c0_g1:43	si_s431	TRINITY_DN12797_c0_g1	32	52	43	-21.10	-14.90	0.706161137440758	9.5	3-16,50-37	1-2,52-51[UP5];17-21,36-32[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUUAGUGUGAUUAUUGUUUU&AUAACAAUAAUUACAUAUUAU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN12797_c0_g1_43_TPlot.pdf
TRINITY_DN12798_c0_g1:1323	si_a111	TRINITY_DN12798_c0_g1	1312	1332	1323	-26.20	-17.70	0.675572519083969	17	9-20,1324-1313	1-8,1332-1325[UP5];21-21,1312-1312[UP3]	.((((((((((((........&........)))))))))))).	CGAAACGAGCUCGCCCAAAAG&AUAAAAUACGAGCUUGUUUUA	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN12798_c0_g1_1323_TPlot.pdf
TRINITY_DN12798_c0_g1:633	si_a80	TRINITY_DN12798_c0_g1	622	646	633	-22.10	-15.40	0.69683257918552	12.5	1-7,646-640;8-19,635-624	x-x,639-636[BULt];20-21,623-622[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	AAUUCUUGAUAAUGUUAUGGAAACA&UGUUUUU----CAUUAUUAAGAAAA	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN12798_c0_g1_633_TPlot.pdf
TRINITY_DN12798_c0_g1:635	si_a78	TRINITY_DN12798_c0_g1	624	648	635	-22.30	-15.40	0.690582959641256	13.5	3-9,646-640;10-21,635-624	1-2,648-647[UP5];x-x,639-636[BULt]	((((((((((((....(((((((..&..)))))))----))))))))))))	UUCUUGAUAAUGUUAUGGAAACAGA&AUUGUUUUU----CAUUAUUAAGAA	2	0.99888131038216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN12798_c0_g1_635_TPlot.pdf
TRINITY_DN127_c0_g1:1434	si_a142	TRINITY_DN127_c0_g1	1423	1443	1434	-23.50	-16.60	0.706382978723404	16	7-20,1437-1424	1-6,1443-1438[UP5];21-21,1423-1423[UP3]	.((((((((((((((......&......)))))))))))))).	CUGAAGCGGCGGCGAAGAAGC&AAUUAAUCGUUGUUGUUUUAA	4	0.999992998292024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN127_c0_g1_1434_TPlot.pdf
TRINITY_DN127_c0_g1:2430	si_a17	TRINITY_DN127_c0_g1	2420	2438	2430	-24.30	-16.10	0.662551440329218	13	4-9,2435-2430;12-21,2429-2420	1-3,2438-2436[UP5];10-11,x-x[BULq]	((((((((((--((((((...&...))))))..))))))))))	GACUGGAGAU--GUGGGCGUG&AAAGCCUAUUUAUUUUUAGUU	2	0.999977815886759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN127_c0_g1_2430_TPlot.pdf
TRINITY_DN127_c0_g1:2511	si_s620	TRINITY_DN127_c0_g1	2500	2520	2511	-32.10	-22.20	0.691588785046729	13.5	8-21,2513-2500	1-7,2520-2514[UP5]	((((((((((((((.......&.......))))))))))))))	GCGAAAAGAUCGCUCCUGCCG&AAAUCCAAGCGAUCUUUUCGU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN127_c0_g1_2511_TPlot.pdf
TRINITY_DN127_c0_g1:2885	si_a142	TRINITY_DN127_c0_g1	2874	2894	2885	-23.50	-17.00	0.723404255319149	13.5	7-19,2888-2876	1-6,2894-2889[UP5];20-21,2875-2874[UP3]	..(((((((((((((......&......)))))))))))))..	CGAAGACAACAACGAAAAGAG&AAUUAAUCGUUGUUGUUUUAA	2	0.988673538665862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN127_c0_g1_2885_TPlot.pdf
TRINITY_DN127_c0_g1:2887	si_a140	TRINITY_DN127_c0_g1	2876	2896	2887	-25.20	-16.60	0.658730158730159	15.5	9-21,2888-2876	1-8,2896-2889[UP5]	(((((((((((((........&........)))))))))))))	AAGACAACAACGAAAAGAGUG&GUAAUUAAUCGUUGUUGUUUU	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN127_c0_g1_2887_TPlot.pdf
TRINITY_DN127_c0_g1:4103	si_s789	TRINITY_DN127_c0_g1	4093	4112	4103	-26.20	-17.70	0.675572519083969	12	5-10,4108-4103;12-20,4102-4094	1-4,4112-4109[UP5];11-11,x-x[BULq];21-21,4093-4093[UP3]	.(((((((((-((((((....&....)))))).))))))))).	CUGAGGUGCG-GCUUGUGAUG&UAAAACAAGCUCGUAUUUUAU	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN127_c0_g1_4103_TPlot.pdf
TRINITY_DN127_c0_g1:4104	si_s788	TRINITY_DN127_c0_g1	4094	4113	4104	-26.20	-17.60	0.67175572519084	13	6-11,4108-4103;13-21,4102-4094	1-5,4113-4109[UP5];12-12,x-x[BULq]	(((((((((-((((((.....&.....)))))).)))))))))	UGAGGUGCG-GCUUGUGAUGA&AUAAAACAAGCUCGUAUUUUA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN127_c0_g1_4104_TPlot.pdf
TRINITY_DN127_c0_g1:4175	si_s789	TRINITY_DN127_c0_g1	4165	4184	4175	-26.20	-17.70	0.675572519083969	12	5-10,4180-4175;12-20,4174-4166	1-4,4184-4181[UP5];11-11,x-x[BULq];21-21,4165-4165[UP3]	.(((((((((-((((((....&....)))))).))))))))).	CUGAGGUGCG-GCUUGUGAUG&UAAAACAAGCUCGUAUUUUAU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN127_c0_g1_4175_TPlot.pdf
TRINITY_DN127_c0_g1:4176	si_s788	TRINITY_DN127_c0_g1	4166	4185	4176	-26.20	-17.60	0.67175572519084	13	6-11,4180-4175;13-21,4174-4166	1-5,4185-4181[UP5];12-12,x-x[BULq]	(((((((((-((((((.....&.....)))))).)))))))))	UGAGGUGCG-GCUUGUGAUGA&AUAAAACAAGCUCGUAUUUUA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN127_c0_g1_4176_TPlot.pdf
TRINITY_DN127_c0_g1:4206	si_s536	TRINITY_DN127_c0_g1	4194	4215	4206	-27.70	-19.50	0.703971119133574	10.5	1-14,4215-4202;15-16,4200-4199	x-x,4201-4201[BULt];17-21,4198-4194[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	GACGAGGCUCGGGUCGGAAGUG&CAUUUUUGAUCCGA-UCAAAAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN127_c0_g1_4206_TPlot.pdf
TRINITY_DN127_c0_g1:4209	si_s533	TRINITY_DN127_c0_g1	4197	4218	4209	-28.80	-21.60	0.75	9	2-17,4217-4202;18-19,4200-4199	1-1,4218-4218[UP5];x-x,4201-4201[BULt];20-21,4198-4197[UP3]	..((.((((((((((((((((.&.))))))))))))))))-))..	GAGGCUCGGGUCGGAAGUGGUG&AAUCAUUUUUGAUCCGA-UCAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN127_c0_g1_4209_TPlot.pdf
TRINITY_DN127_c0_g1:4211	si_s531	TRINITY_DN127_c0_g1	4200	4221	4211	-30.00	-21.90	0.73	10.5	1-2,4221-4220;4-19,4217-4202	3-3,4219-4218[AILt];20-21,4201-4200[UP3]	..((((((((((((((((..((&))-.))))))))))))))))..	GCUCGGGUCGGAAGUGGUGGUC&GA-AAUCAUUUUUGAUCCGAUC	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN127_c0_g1_4211_TPlot.pdf
TRINITY_DN127_c0_g1:4212	si_s530	TRINITY_DN127_c0_g1	4201	4222	4212	-29.50	-24.30	0.823728813559322	9	1-3,4222-4220;5-20,4217-4202	4-4,4219-4218[AILt];21-21,4201-4201[UP3]	.((((((((((((((((..(((&)))-.)))))))))))))))).	CUCGGGUCGGAAGUGGUGGUCG&CGA-AAUCAUUUUUGAUCCGAU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN127_c0_g1_4212_TPlot.pdf
TRINITY_DN127_c0_g1:4213	si_s529	TRINITY_DN127_c0_g1	4202	4223	4213	-30.30	-24.40	0.805280528052805	8	1-4,4223-4220;6-21,4217-4202	5-5,4219-4218[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	UCGGGUCGGAAGUGGUGGUCGG&UCGA-AAUCAUUUUUGAUCCGA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN127_c0_g1_4213_TPlot.pdf
TRINITY_DN127_c0_g1:4214	si_s528	TRINITY_DN127_c0_g1	4203	4224	4214	-29.40	-22.40	0.761904761904762	9.5	2-5,4223-4220;7-21,4217-4203	1-1,4224-4224[UP5];6-6,4219-4218[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	CGGGUCGGAAGUGGUGGUCGGC&UUCGA-AAUCAUUUUUGAUCCG	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN127_c0_g1_4214_TPlot.pdf
TRINITY_DN127_c0_g1:4215	si_s527	TRINITY_DN127_c0_g1	4204	4225	4215	-28.00	-20.60	0.735714285714286	11.5	3-6,4223-4220;8-21,4217-4204	1-2,4225-4224[UP5];7-7,4219-4218[AILt]	((((((((((((((..((((..&..))))-.))))))))))))))	GGGUCGGAAGUGGUGGUCGGCG&AUUCGA-AAUCAUUUUUGAUCC	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN127_c0_g1_4215_TPlot.pdf
TRINITY_DN127_c0_g1:4216	si_s526	TRINITY_DN127_c0_g1	4205	4226	4216	-25.60	-17.20	0.671875	13	4-7,4223-4220;9-21,4217-4205	1-3,4226-4224[UP5];8-8,4219-4218[AILt]	(((((((((((((..((((...&...))))-.)))))))))))))	GGUCGGAAGUGGUGGUCGGCGA&AAUUCGA-AAUCAUUUUUGAUC	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN127_c0_g1_4216_TPlot.pdf
TRINITY_DN12801_c0_g1:1054	si_a702	TRINITY_DN12801_c0_g1	1043	1063	1054	-30.80	-21.20	0.688311688311688	8.5	1-6,1063-1058;8-16,1056-1048	7-7,1057-1057[SIL];17-21,1047-1043[UP3]	.....(((((((((.((((((&)))))).))))))))).....	CUAAAUGGGAUGUAGUAGUUG&CAACUGGUACAUUCCAAAAUA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN12801_c0_g1_1054_TPlot.pdf
TRINITY_DN12801_c0_g1:1055	si_a701	TRINITY_DN12801_c0_g1	1044	1064	1055	-31.20	-21.20	0.67948717948718	8.5	2-7,1063-1058;9-17,1056-1048	1-1,1064-1064[UP5];8-8,1057-1057[SIL];18-21,1047-1044[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	UAAAUGGGAUGUAGUAGUUGA&ACAACUGGUACAUUCCAAAAU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN12801_c0_g1_1055_TPlot.pdf
TRINITY_DN12801_c0_g1:1057	si_s771	TRINITY_DN12801_c0_g1	1045	1066	1057	-25.20	-16.80	0.666666666666667	7	1-13,1066-1054;14-14,1052-1052;16-19,1050-1047	x-x,1053-1053[BULt];15-15,1051-1051[SIL];20-21,1046-1045[UP3]	..((((.(.(((((((((((((&)))))))))))))-).))))..	AAAUGGGAUGUAGUAGUUGAUC&GAUUAAUUACUAU-UGCUAUAA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN12801_c0_g1_1057_TPlot.pdf
TRINITY_DN12801_c0_g1:1113	si_a67	TRINITY_DN12801_c0_g1	1102	1124	1113	-27.20	-17.74	0.652205882352941	13	1-8,1124-1117;13-21,1110-1102	9-12,1116-1111[AILt]	(((((((((......((((((((&))))))))--....)))))))))	GAGGAACAAGCAGCAAAAGAAGC&GCUUCUUU--CAAAUUGUUUUUC	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN12801_c0_g1_1113_TPlot.pdf
TRINITY_DN12801_c0_g1:1308	si_a20	TRINITY_DN12801_c0_g1	1297	1317	1308	-26.70	-18.40	0.689138576779026	9.5	1-5,1317-1313;7-11,1311-1307;14-20,1304-1298	6-6,1312-1312[SIL];12-13,1306-1305[SIL];21-21,1297-1297[UP3]	.(((((((..(((((.(((((&))))).)))))..))))))).	AGGAACUACUGAUGACUGGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN12801_c0_g1_1308_TPlot.pdf
TRINITY_DN12801_c0_g1:1309	si_a19	TRINITY_DN12801_c0_g1	1298	1318	1309	-27.00	-19.30	0.714814814814815	7.5	1-6,1318-1313;8-12,1311-1307;15-21,1304-1298	7-7,1312-1312[SIL];13-14,1306-1305[SIL]	(((((((..(((((.((((((&)))))).)))))..)))))))	GGAACUACUGAUGACUGGGCU&AGCCUAUUUAUUUUUAGUUCU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN12801_c0_g1_1309_TPlot.pdf
TRINITY_DN12801_c0_g1:1310	si_a18	TRINITY_DN12801_c0_g1	1299	1319	1310	-26.30	-18.50	0.703422053231939	7.5	2-7,1318-1313;9-13,1311-1307;16-21,1304-1299	1-1,1319-1319[UP5];8-8,1312-1312[SIL];14-15,1306-1305[SIL]	((((((..(((((.((((((.&.)))))).)))))..))))))	GAACUACUGAUGACUGGGCUG&AAGCCUAUUUAUUUUUAGUUC	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN12801_c0_g1_1310_TPlot.pdf
TRINITY_DN12801_c0_g1:1371	si_a755	TRINITY_DN12801_c0_g1	1360	1383	1371	-34.90	-23.10	0.66189111747851	13	1-9,1383-1375;10-15,1371-1366	x-x,1374-1372[BULt];16-21,1365-1360[UP3]	......((((((...(((((((((&)))))))))---))))))......	CCCUGCACCCAACUGGGGAGGUUC&GAACCUCCU---UUGGGUUUUUGA	3	0.999937263402404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN12801_c0_g1_1371_TPlot.pdf
TRINITY_DN12801_c0_g1:1375	si_a754	TRINITY_DN12801_c0_g1	1361	1384	1375	-34.60	-23.10	0.667630057803468	13	2-10,1383-1375;11-16,1371-1366	1-1,1384-1384[UP5];x-x,1374-1372[BULt];17-21,1365-1361[UP3]	.....((((((...(((((((((.&.)))))))))---)))))).....	CCUGCACCCAACUGGGGAGGUUCC&UGAACCUCCU---UUGGGUUUUUG	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN12801_c0_g1_1375_TPlot.pdf
TRINITY_DN12801_c0_g1:1376	si_a753	TRINITY_DN12801_c0_g1	1362	1385	1376	-33.10	-23.10	0.697885196374622	14	3-11,1383-1375;12-17,1371-1366	1-2,1385-1384[UP5];x-x,1374-1372[BULt];18-21,1365-1362[UP3]	....((((((...(((((((((..&..)))))))))---))))))....	CUGCACCCAACUGGGGAGGUUCCA&AUGAACCUCCU---UUGGGUUUUU	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN12801_c0_g1_1376_TPlot.pdf
TRINITY_DN12801_c0_g1:1377	si_a752	TRINITY_DN12801_c0_g1	1363	1386	1377	-34.80	-23.10	0.663793103448276	15	4-12,1383-1375;13-18,1371-1366	1-3,1386-1384[UP5];x-x,1374-1372[BULt];19-21,1365-1363[UP3]	...((((((...(((((((((...&...)))))))))---))))))...	UGCACCCAACUGGGGAGGUUCCAG&CAUGAACCUCCU---UUGGGUUUU	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN12801_c0_g1_1377_TPlot.pdf
TRINITY_DN12801_c0_g1:1379	si_a750	TRINITY_DN12801_c0_g1	1365	1394	1379	-39.70	-26.36	0.663979848866499	18.5	1-4,1394-1391;6-14,1383-1375;15-20,1371-1366	5-5,1390-1384[AILt];x-x,1374-1372[BULt];21-21,1365-1365[UP3]	.((((((...(((((((((.......((((&))))------.)))))))))---)))))).	CACCCAACUGGGGAGGUUCCAGCGACUGGC&GCCA------UGAACCUCCU---UUGGGUU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN12801_c0_g1_1379_TPlot.pdf
TRINITY_DN12801_c0_g1:347	si_a103	TRINITY_DN12801_c0_g1	336	356	347	-30.00	-19.94	0.664666666666667	11.5	3-9,354-348;15-21,342-336	1-2,356-355[UP5];10-14,347-343[SIL]	(((((((.....(((((((..&..))))))).....)))))))	GCUCGUGCUAUUUCUUCGUAA&UAACGAAGAUAAAAUACGAGC	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a103_TRINITY_DN12801_c0_g1_347_TPlot.pdf
TRINITY_DN12801_c0_g1:415	si_a281	TRINITY_DN12801_c0_g1	404	424	415	-31.70	-21.10	0.665615141955836	8.5	1-6,424-419;9-18,416-407	7-8,418-417[SIL];19-21,406-404[UP3]	...((((((((((..((((((&))))))..))))))))))...	AACAUCCAGGUGAAGUUUUCG&CGAAAAGAUCGCUUGGAUUUA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a281_TRINITY_DN12801_c0_g1_415_TPlot.pdf
TRINITY_DN12801_c0_g1:416	si_a280	TRINITY_DN12801_c0_g1	405	425	416	-32.10	-22.60	0.70404984423676	7.5	1-7,425-419;10-19,416-407	8-9,418-417[SIL];20-21,406-405[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	ACAUCCAGGUGAAGUUUUCGU&ACGAAAAGAUCGCUUGGAUUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN12801_c0_g1_416_TPlot.pdf
TRINITY_DN12801_c0_g1:417	si_a279	TRINITY_DN12801_c0_g1	406	426	417	-32.50	-22.60	0.695384615384615	7	2-8,425-419;11-20,416-407	1-1,426-426[UP5];9-10,418-417[SIL];21-21,406-406[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	CAUCCAGGUGAAGUUUUCGUU&UACGAAAAGAUCGCUUGGAUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN12801_c0_g1_417_TPlot.pdf
TRINITY_DN12801_c0_g1:418	si_a278	TRINITY_DN12801_c0_g1	407	427	418	-34.20	-22.60	0.660818713450292	8	3-9,425-419;12-21,416-407	1-2,427-426[UP5];10-11,418-417[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	AUCCAGGUGAAGUUUUCGUUA&CUACGAAAAGAUCGCUUGGAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a278_TRINITY_DN12801_c0_g1_418_TPlot.pdf
TRINITY_DN12801_c0_g1:507	si_s208	TRINITY_DN12801_c0_g1	496	517	507	-34.50	-24.10	0.698550724637681	5.5	1-9,517-509;10-15,507-502;18-21,499-496	x-x,508-508[BULt];16-17,501-500[SIL]	((((..((((((.(((((((((&)))))))))-))))))..))))	GUUUGCAGCACACACUGGUGCA&UGUACCAGU-UGUGUUCGAAAC	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN12801_c0_g1_507_TPlot.pdf
TRINITY_DN12801_c0_g1:509	si_s207	TRINITY_DN12801_c0_g1	496	518	509	-33.00	-22.80	0.690909090909091	7	2-10,517-509;11-16,507-502;17-20,500-497	1-1,518-518[UP5];x-x,508-508[BULt];x-x,501-501[BULt];21-21,496-496[UP3]	.((((.((((((.(((((((((.&.)))))))))-))))))-)))).	GUUUGCAGCACACACUGGUGCAA&AUGUACCAGU-UGUGUU-CGAAA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN12801_c0_g1_509_TPlot.pdf
TRINITY_DN12801_c0_g1:510	si_s206	TRINITY_DN12801_c0_g1	497	519	510	-33.00	-22.60	0.684848484848485	8	3-11,517-509;12-17,507-502;18-21,500-497	1-2,519-518[UP5];x-x,508-508[BULt];x-x,501-501[BULt]	((((.((((((.(((((((((..&..)))))))))-))))))-))))	UUUGCAGCACACACUGGUGCAAC&AAUGUACCAGU-UGUGUU-CGAA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN12801_c0_g1_510_TPlot.pdf
TRINITY_DN12801_c0_g1:514	si_s202	TRINITY_DN12801_c0_g1	502	524	514	-33.60	-23.20	0.69047619047619	8.5	1-4,524-521;7-15,517-509;16-21,507-502	5-6,520-518[AILt];x-x,508-508[BULt]	((((((.(((((((((...((((&))))-..)))))))))-))))))	AGCACACACUGGUGCAACCCCAA&UUGG-AAUGUACCAGU-UGUGUU	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN12801_c0_g1_514_TPlot.pdf
TRINITY_DN12801_c0_g1:515	si_s201	TRINITY_DN12801_c0_g1	503	525	515	-33.60	-22.70	0.675595238095238	9.5	2-5,524-521;8-16,517-509;17-21,507-503	1-1,525-525[UP5];6-7,520-518[AILt];x-x,508-508[BULt]	(((((.(((((((((...((((.&.))))-..)))))))))-)))))	GCACACACUGGUGCAACCCCAAU&UUUGG-AAUGUACCAGU-UGUGU	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN12801_c0_g1_515_TPlot.pdf
TRINITY_DN12801_c0_g1:849	si_s771	TRINITY_DN12801_c0_g1	837	858	849	-25.20	-16.80	0.666666666666667	7	1-13,858-846;14-14,844-844;16-19,842-839	x-x,845-845[BULt];15-15,843-843[SIL];20-21,838-837[UP3]	..((((.(.(((((((((((((&)))))))))))))-).))))..	AAAUGGGACGUAGUAGUUGAUC&GAUUAAUUACUAU-UGCUAUAA	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN12801_c0_g1_849_TPlot.pdf
TRINITY_DN12801_c0_g1:938	si_a314	TRINITY_DN12801_c0_g1	927	947	938	-27.10	-18.00	0.664206642066421	8	2-5,946-943;8-16,940-932;18-21,930-927	1-1,947-947[UP5];6-7,942-941[SIL];17-17,931-931[SIL]	((((.(((((((((..((((.&.))))..))))))))).))))	GAGAUUUGUGGAUAUUUCCAU&UUGGAUUUAUCCAUGAUUUUU	4	0.999999435725072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN12801_c0_g1_938_TPlot.pdf
TRINITY_DN12802_c2_g1:1618	si_s481	TRINITY_DN12802_c2_g1	1607	1627	1618	-23.00	-16.00	0.695652173913043	7.5	1-15,1627-1613	16-21,1612-1607[UP3]	......(((((((((((((((&)))))))))))))))......	GAUAUUAAUAAGUAUAGGAUU&GAUCCUAUAUUUAUUUAAAUA	0	0.0934038781597525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN12802_c2_g1_1618_TPlot.pdf
TRINITY_DN12804_c0_g1:2494	si_a764	TRINITY_DN12804_c0_g1	2483	2503	2494	-28.90	-19.48	0.674048442906574	9.5	2-9,2502-2495;13-21,2491-2483	1-1,2503-2503[UP5];10-12,2494-2492[SIL]	(((((((((...((((((((.&.))))))))...)))))))))	UUGAAUCAGAUUGGAACCCAG&UUGGGUUUUUGAUUGAUUCAA	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN12804_c0_g1_2494_TPlot.pdf
TRINITY_DN12804_c0_g1:2674	si_a24	TRINITY_DN12804_c0_g1	2663	2683	2674	-24.20	-15.90	0.65702479338843	8.5	4-17,2680-2667;19-20,2665-2664	1-3,2683-2681[UP5];18-18,2666-2666[SIL];21-21,2663-2663[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	AUCGUAGAGCUGAAAAUAUCC&AUUUAUUUUUAGUUCUAAGAC	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN12804_c0_g1_2674_TPlot.pdf
TRINITY_DN12804_c0_g1:4203	si_a463	TRINITY_DN12804_c0_g1	4192	4211	4203	-19.70	-13.10	0.66497461928934	5.5	2-8,4210-4204;11-21,4202-4192	1-1,4211-4211[UP5];9-10,4203-4203[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	AUAGUUACAUAC-AUAUAUAC&UUAUAUAUAAUAUGUAAUUAU	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN12804_c0_g1_4203_TPlot.pdf
TRINITY_DN1280_c0_g1:1343	si_a785	TRINITY_DN1280_c0_g1	1332	1353	1343	-25.90	-17.00	0.656370656370656	10.5	2-9,1352-1345;12-21,1341-1332	1-1,1353-1353[UP5];10-11,1344-1342[AILt]	((((((((((...((((((((.&.))))))))-..))))))))))	GAGGGUGGGACAUAUGGAAGAA&CUCUUCUAU-UUUUCUAUUUUC	2	0.9999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1280_c0_g1_1343_TPlot.pdf
TRINITY_DN1280_c0_g1:806	si_a314	TRINITY_DN1280_c0_g1	795	815	806	-27.10	-18.40	0.678966789667897	7.5	3-14,813-802;16-19,800-797	1-2,815-814[UP5];15-15,801-801[SIL];20-21,796-795[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UCGGAUAGUGGAUAAAUCCUU&UUGGAUUUAUCCAUGAUUUUU	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN1280_c0_g1_806_TPlot.pdf
TRINITY_DN12815_c0_g2:1455	si_a468	TRINITY_DN12815_c0_g2	1444	1464	1455	-21.30	-14.20	0.666666666666667	6	1-14,1464-1451;17-20,1448-1445	15-16,1450-1449[SIL];21-21,1444-1444[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	GGAUAUAAAUUACGUGUUAUA&UAUAAUAUGUAAUUAUUGUUA	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN12815_c0_g2_1455_TPlot.pdf
TRINITY_DN12815_c0_g3:1147	si_s816	TRINITY_DN12815_c0_g3	1136	1156	1147	-24.90	-18.80	0.755020080321285	8	3-14,1154-1143;16-20,1141-1137	1-2,1156-1155[UP5];15-15,1142-1142[SIL];21-21,1136-1136[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AUUCGUCGUUGAGAGAAGGAG&UACCUUUUCUUAAUAAUGAAA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN12815_c0_g3_1147_TPlot.pdf
TRINITY_DN12815_c0_g3:1728	si_s490	TRINITY_DN12815_c0_g3	1717	1737	1728	-17.80	-12.50	0.702247191011236	6.5	3-9,1735-1729;11-20,1727-1718	1-2,1737-1736[UP5];10-10,1728-1728[SIL];21-21,1717-1717[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	AUUUGUUUGUACUUAAAUACU&UUUAUUUAAAUAUAAACAAAA	2	0.936110413218895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN12815_c0_g3_1728_TPlot.pdf
TRINITY_DN12817_c0_g1:2991	si_a410	TRINITY_DN12817_c0_g1	2980	3000	2991	-17.80	-12.90	0.724719101123595	7.5	3-15,2998-2986;17-20,2984-2981	1-2,3000-2999[UP5];16-16,2985-2985[SIL];21-21,2980-2980[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AUUAUCUGAGUGUAAACAAUA&UUUUGUUUAUAUUUAAAUAAA	2	0.997154840359294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN12817_c0_g1_2991_TPlot.pdf
TRINITY_DN12817_c0_g1:3076	si_a19	TRINITY_DN12817_c0_g1	3063	3086	3076	-27.00	-18.30	0.677777777777778	5.5	1-8,3086-3079;9-16,3077-3070;17-20,3067-3064	x-x,3078-3078[BULt];x-x,3069-3068[BULt];21-21,3063-3063[UP3]	.((((..((((((((.((((((((&))))))))-))))))))--)))).	UGAACGUUGAAAAUACAAUAGGCU&AGCCUAUU-UAUUUUUA--GUUCU	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN12817_c0_g1_3076_TPlot.pdf
TRINITY_DN12817_c0_g1:3077	si_a18	TRINITY_DN12817_c0_g1	3064	3087	3077	-26.30	-18.10	0.688212927756654	5.5	2-9,3086-3079;10-17,3077-3070;18-21,3067-3064	1-1,3087-3087[UP5];x-x,3078-3078[BULt];x-x,3069-3068[BULt]	((((..((((((((.((((((((.&.))))))))-))))))))--))))	GAACGUUGAAAAUACAAUAGGCUA&AAGCCUAUU-UAUUUUUA--GUUC	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN12817_c0_g1_3077_TPlot.pdf
TRINITY_DN1281_c0_g1:185	si_s71	TRINITY_DN1281_c0_g1	175	194	185	-25.70	-17.30	0.673151750972763	4.5	1-13,194-182;15-17,181-179;19-21,177-175	14-14,x-x[BULq];18-18,178-178[SIL]	(((.(((-(((((((((((((&))))))))))))).))).)))	GGGUAAG-AAAAAGGUAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1281_c0_g1_185_TPlot.pdf
TRINITY_DN1281_c0_g1:186	si_s70	TRINITY_DN1281_c0_g1	175	195	186	-25.80	-17.70	0.686046511627907	4.5	1-14,195-182;16-18,181-179;19-21,177-175	15-15,x-x[BULq];x-x,178-178[BULt]	(((.(((-((((((((((((((&)))))))))))))).)))-)))	GGGUAAG-AAAAAGGUAGAAGU&ACUUCUAUUUUUUUUCUU-UCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1281_c0_g1_186_TPlot.pdf
TRINITY_DN1281_c0_g1:187	si_s69	TRINITY_DN1281_c0_g1	166	196	187	-23.40	-16.90	0.722222222222222	12	1-15,196-182;16-21,171-166	x-x,181-172[BULt]	((((((..........(((((((((((((((&)))))))))))))))----------))))))	GAAAGAAAUGGGUAAGAAAAAGGUAGAAGUU&AACUUCUAUUUUUUU----------UCUUUC	4	0.999999999999409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1281_c0_g1_187_TPlot.pdf
TRINITY_DN1281_c0_g1:188	si_s68	TRINITY_DN1281_c0_g1	178	197	188	-23.10	-18.70	0.809523809523809	4	1-16,197-182;18-20,181-179	17-17,x-x[BULq];21-21,178-178[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	UAAG-AAAAAGGUAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1281_c0_g1_188_TPlot.pdf
TRINITY_DN1281_c0_g1:189	si_s67	TRINITY_DN1281_c0_g1	179	198	189	-25.60	-18.90	0.73828125	4	2-17,197-182;19-21,181-179	1-1,198-198[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	AAG-AAAAAGGUAGAAGUUGA&GCAACUUCUAUUUUUUUUCUU	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1281_c0_g1_189_TPlot.pdf
TRINITY_DN1281_c0_g1:192	si_s64	TRINITY_DN1281_c0_g1	181	201	192	-24.10	-18.60	0.771784232365145	8.5	5-21,197-181	1-4,201-198[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAAAAGGUAGAAGUUGAAGA&UUAGCAACUUCUAUUUUUUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1281_c0_g1_192_TPlot.pdf
TRINITY_DN1281_c0_g1:193	si_s63	TRINITY_DN1281_c0_g1	182	202	193	-25.80	-20.70	0.802325581395349	6	1-3,202-200;6-21,197-182	4-5,199-198[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	AAAAAGGUAGAAGUUGAAGAC&GUUAGCAACUUCUAUUUUUUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN1281_c0_g1_193_TPlot.pdf
TRINITY_DN1281_c0_g1:200	si_s897	TRINITY_DN1281_c0_g1	189	213	200	-31.30	-20.70	0.661341853035144	13.5	3-8,211-206;9-19,201-191	1-2,213-212[UP5];x-x,205-202[BULt];20-21,190-189[UP3]	..(((((((((((....((((((..&..))))))----)))))))))))..	UAGAAGUUGAAGACAGUGAAAGCGA&AGGCUUUC----UCUUCAAUUUCAA	3	0.999999366446917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN1281_c0_g1_200_TPlot.pdf
TRINITY_DN1281_c0_g1:201	si_s896	TRINITY_DN1281_c0_g1	190	214	201	-31.60	-20.70	0.65506329113924	14.5	4-9,211-206;10-20,201-191	1-3,214-212[UP5];x-x,205-202[BULt];21-21,190-190[UP3]	.(((((((((((....((((((...&...))))))----))))))))))).	AGAAGUUGAAGACAGUGAAAGCGAG&UAGGCUUUC----UCUUCAAUUUCA	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN1281_c0_g1_201_TPlot.pdf
TRINITY_DN1281_c0_g1:261	si_a789	TRINITY_DN1281_c0_g1	243	270	261	-24.80	-16.50	0.665322580645161	20	1-11,270-260;12-18,252-246	x-x,259-253[BULt];19-21,245-243[UP3]	...(((((((.......(((((((((((&)))))))))))-------)))))))...	AUAGGAGAGUAGUAGACGGAAAAGUAGA&UCUAUUUUUCU-------AUUUUCCAAU	3	0.999999999987464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1281_c0_g1_261_TPlot.pdf
TRINITY_DN1281_c0_g1:645	si_s74	TRINITY_DN1281_c0_g1	634	654	645	-25.00	-16.90	0.676	5.5	1-15,654-640;18-21,637-634	16-17,639-638[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	GAAAAAGAAGAAGAAAAGUGG&CUAUUUUUUUUCUUUCCUUUC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1281_c0_g1_645_TPlot.pdf
TRINITY_DN1281_c0_g1:646	si_s73	TRINITY_DN1281_c0_g1	635	655	646	-24.00	-15.90	0.6625	8.5	1-16,655-640	17-21,639-635[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAAGAAGAAGAAAAGUGGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1281_c0_g1_646_TPlot.pdf
TRINITY_DN1281_c0_g1:647	si_s72	TRINITY_DN1281_c0_g1	636	656	647	-24.10	-16.00	0.663900414937759	8.5	2-17,655-640	1-1,656-656[UP5];18-21,639-636[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAAGAAGAAGAAAAGUGGAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1281_c0_g1_647_TPlot.pdf
TRINITY_DN1281_c0_g1:650	si_s69	TRINITY_DN1281_c0_g1	639	659	650	-23.40	-16.00	0.683760683760684	11	5-20,655-640	1-4,659-656[UP5];21-21,639-639[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAGAAGAAAAGUGGACCAC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1281_c0_g1_650_TPlot.pdf
TRINITY_DN1281_c0_g1:718	si_s73	TRINITY_DN1281_c0_g1	706	727	718	-24.00	-16.30	0.679166666666667	3.5	1-3,727-725;5-15,723-713;16-21,711-706	4-4,724-724[SIL];x-x,712-712[BULt]	((((((.(((((((((((.(((&))).)))))))))))-))))))	AAAGGACAAGAAAAAAAAGAGG&UCUAUUUUUUUUCUU-UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1281_c0_g1_718_TPlot.pdf
TRINITY_DN1281_c0_g1:790	si_s73	TRINITY_DN1281_c0_g1	778	799	790	-24.00	-16.30	0.679166666666667	3.5	1-3,799-797;5-15,795-785;16-21,783-778	4-4,796-796[SIL];x-x,784-784[BULt]	((((((.(((((((((((.(((&))).)))))))))))-))))))	AAAGGACAAGAAAAAAAAGAGG&UCUAUUUUUUUUCUU-UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1281_c0_g1_790_TPlot.pdf
TRINITY_DN1281_c0_g1:867	si_s80	TRINITY_DN1281_c0_g1	856	876	867	-28.20	-19.00	0.673758865248227	4.5	1-8,876-869;10-17,867-860;19-21,858-856	9-9,868-868[SIL];18-18,859-859[SIL]	(((.((((((((.((((((((&)))))))).)))))))).)))	GAAAAAGAGAGGUAAGAAAGA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1281_c0_g1_867_TPlot.pdf
TRINITY_DN1281_c0_g1:871	si_s76	TRINITY_DN1281_c0_g1	860	880	871	-23.60	-17.80	0.754237288135593	5.5	1-3,880-878;5-12,876-869;14-21,867-860	4-4,877-877[SIL];13-13,868-868[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	AAGAGAGGUAAGAAAGAUGAU&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1281_c0_g1_871_TPlot.pdf
TRINITY_DN1281_c0_g1:872	si_s75	TRINITY_DN1281_c0_g1	861	881	872	-24.00	-17.40	0.725	6	1-4,881-878;6-13,876-869;15-21,867-861	5-5,877-877[SIL];14-14,868-868[SIL]	(((((((.((((((((.((((&)))).)))))))).)))))))	AGAGAGGUAAGAAAGAUGAUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1281_c0_g1_872_TPlot.pdf
TRINITY_DN1281_c0_g1:873	si_s803	TRINITY_DN1281_c0_g1	862	882	873	-26.00	-17.40	0.669230769230769	11	4-10,879-873;13-21,870-862	1-3,882-880[UP5];11-12,872-871[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GAGAGGUAAGAAAGAUGAUGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999992742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1281_c0_g1_873_TPlot.pdf
TRINITY_DN1281_c0_g1:952	si_s78	TRINITY_DN1281_c0_g1	933	961	952	-26.20	-18.20	0.694656488549618	11	2-16,960-946;17-21,937-933	1-1,961-961[UP5];x-x,945-938[BULt]	(((((........(((((((((((((((.&.)))))))))))))))--------)))))	AGAAGUCUGAUGUAAAGGAGAGAAAAAGU&UUUUUUUCUUUCCUUU--------CUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1281_c0_g1_952_TPlot.pdf
TRINITY_DN1281_c1_g1:1222	si_a23	TRINITY_DN1281_c1_g1	1211	1231	1222	-22.80	-16.50	0.723684210526316	6	1-18,1231-1214	19-21,1213-1211[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAGUGGAAUUAAGAGUAAAUA&UAUUUAUUUUUAGUUCUAAGA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1281_c1_g1_1222_TPlot.pdf
TRINITY_DN12822_c0_g1:1874	si_a628	TRINITY_DN12822_c0_g1	1863	1886	1874	-27.10	-17.70	0.653136531365314	15	1-6,1886-1881;7-15,1877-1869	x-x,1880-1878[BULt];16-21,1868-1863[UP3]	......(((((((((...((((((&))))))---)))))))))......	ACCAUCAUCGGCAUGGCCAUGCGC&GCGUAU---UAUGUCGAUUUUUUU	2	0.999990121341346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN12822_c0_g1_1874_TPlot.pdf
TRINITY_DN12822_c0_g1:2063	si_s633	TRINITY_DN12822_c0_g1	2044	2074	2063	-37.90	-24.90	0.656992084432718	16.5	1-8,2074-2067;9-15,2064-2058;16-21,2049-2044	x-x,2066-2065[BULt];x-x,2057-2050[BULt]	((((((........(((((((..((((((((&))))))))--)))))))--------))))))	AGGGCGCCAUCCGCGGCGCCUCAACGGAGGG&CUUUUCGU--AGGCGUU--------UGCCCU	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN12822_c0_g1_2063_TPlot.pdf
TRINITY_DN12822_c0_g1:2076	si_s629	TRINITY_DN12822_c0_g1	2056	2085	2076	-34.60	-24.20	0.699421965317919	24	1-12,2085-2074;13-19,2064-2058	x-x,2073-2065[BULt];20-21,2057-2056[UP3]	..(((((((.........((((((((((((&))))))))))))---------)))))))..	GCGGCGCCUCAACGGAGGGCGAAGAGGUCG&CGAUCUUUUCGU---------AGGCGUUUG	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN12822_c0_g1_2076_TPlot.pdf
TRINITY_DN12822_c0_g1:2077	si_s628	TRINITY_DN12822_c0_g1	2057	2086	2077	-35.40	-26.00	0.734463276836158	14	1-13,2086-2074;14-20,2064-2058	x-x,2073-2065[BULt];21-21,2057-2057[UP3]	.(((((((.........(((((((((((((&)))))))))))))---------))))))).	CGGCGCCUCAACGGAGGGCGAAGAGGUCGU&GCGAUCUUUUCGU---------AGGCGUUU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN12822_c0_g1_2077_TPlot.pdf
TRINITY_DN12822_c0_g1:2078	si_s627	TRINITY_DN12822_c0_g1	2058	2087	2078	-36.10	-26.00	0.720221606648199	14.5	2-14,2086-2074;15-21,2064-2058	1-1,2087-2087[UP5];x-x,2073-2065[BULt]	(((((((.........(((((((((((((.&.)))))))))))))---------)))))))	GGCGCCUCAACGGAGGGCGAAGAGGUCGUG&AGCGAUCUUUUCGU---------AGGCGUU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN12822_c0_g1_2078_TPlot.pdf
TRINITY_DN12822_c0_g1:208	si_a780	TRINITY_DN12822_c0_g1	197	217	208	-27.30	-18.20	0.666666666666667	7.5	1-4,217-214;6-18,212-200	5-5,213-213[SIL];19-21,199-197[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CCAGAGGAUAGAAGAGAUGGA&UUCAACUCUUCUAUUUUUCUA	3	0.999998359419766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN12822_c0_g1_208_TPlot.pdf
TRINITY_DN12822_c0_g1:2145	si_a502	TRINITY_DN12822_c0_g1	2134	2153	2145	-32.10	-21.00	0.654205607476635	11.5	1-3,2153-2151;6-17,2149-2138	4-5,2150-2150[AILq];18-21,2137-2134[UP3]	....((((((((((((.-(((&)))..))))))))))))....	CGAACGAGGGGGACGAU-GAC&GUUUUUCGUCUUCCUUGGAAU	2	0.999999999036237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN12822_c0_g1_2145_TPlot.pdf
TRINITY_DN12822_c0_g1:2146	si_a501	TRINITY_DN12822_c0_g1	2135	2154	2146	-33.50	-23.10	0.68955223880597	10	1-4,2154-2151;7-18,2149-2138	5-6,2150-2150[AILq];19-21,2137-2135[UP3]	...((((((((((((.-((((&))))..))))))))))))...	GAACGAGGGGGACGAU-GACG&CGUUUUUCGUCUUCCUUGGAA	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN12822_c0_g1_2146_TPlot.pdf
TRINITY_DN12822_c0_g1:2147	si_a500	TRINITY_DN12822_c0_g1	2136	2155	2147	-34.40	-24.70	0.718023255813954	8.5	1-5,2155-2151;8-19,2149-2138	6-7,2150-2150[AILq];20-21,2137-2136[UP3]	..((((((((((((.-(((((&)))))..))))))))))))..	AACGAGGGGGACGAU-GACGA&UCGUUUUUCGUCUUCCUUGGA	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN12822_c0_g1_2147_TPlot.pdf
TRINITY_DN12822_c0_g1:2148	si_a499	TRINITY_DN12822_c0_g1	2137	2156	2148	-35.20	-24.70	0.701704545454545	8.5	2-6,2155-2151;9-20,2149-2138	1-1,2156-2156[UP5];7-8,2150-2150[AILq];21-21,2137-2137[UP3]	.((((((((((((.-(((((.&.)))))..)))))))))))).	ACGAGGGGGACGAU-GACGAA&GUCGUUUUUCGUCUUCCUUGG	2	0.997392228208699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN12822_c0_g1_2148_TPlot.pdf
TRINITY_DN12822_c0_g1:2149	si_a498	TRINITY_DN12822_c0_g1	2138	2157	2149	-33.50	-24.20	0.722388059701493	9.5	3-7,2155-2151;10-21,2149-2138	1-2,2157-2156[UP5];8-9,2150-2150[AILq]	((((((((((((.-(((((..&..)))))..))))))))))))	CGAGGGGGACGAU-GACGAAG&UGUCGUUUUUCGUCUUCCUUG	2	0.985472190984285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN12822_c0_g1_2149_TPlot.pdf
TRINITY_DN12822_c0_g1:2160	si_s797	TRINITY_DN12822_c0_g1	2150	2169	2160	-30.00	-19.60	0.653333333333333	8	1-5,2169-2165;7-10,2163-2160;13-21,2158-2150	6-6,2164-2164[SIL];11-12,2159-2159[AILq]	(((((((((.-((((.(((((&))))).))))..)))))))))	UGACGAAGAG-GAAUUCGAGU&GCUCGUAUUUUAUCUUCGUUA	2	0.999994357653408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN12822_c0_g1_2160_TPlot.pdf
TRINITY_DN12822_c0_g1:2596	si_a632	TRINITY_DN12822_c0_g1	2584	2605	2596	-26.10	-18.40	0.704980842911877	9.5	2-11,2604-2595;16-21,2589-2584	1-1,2605-2605[UP5];12-15,2594-2590[AILt]	((((((.....((((((((((.&.))))))))))-....))))))	GCUCAAUGUGCGUCGACAUAAC&AUUAUGUCGAU-UUUUUUGAGU	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN12822_c0_g1_2596_TPlot.pdf
TRINITY_DN12822_c0_g1:3147	si_a495	TRINITY_DN12822_c0_g1	3131	3156	3147	-31.90	-22.00	0.689655172413793	18.5	2-10,3155-3147;13-21,3139-3131	1-1,3156-3156[UP5];11-12,3146-3140[AILt]	(((((((((.......(((((((((.&.)))))))))-----..)))))))))	GGAGGGCGGCUAGCAUGACGGCAUAC&AUAUGUCGUU-----UUUCGUCUUCC	3	0.999989647362308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN12822_c0_g1_3147_TPlot.pdf
TRINITY_DN12822_c0_g1:56	si_a310	TRINITY_DN12822_c0_g1	39	65	56	-33.70	-21.94	0.651038575667656	19.5	1-11,65-55;14-19,46-41	12-13,54-47[AILt];20-21,40-39[UP3]	..((((((........(((((((((((&)))))))))))------..))))))..	GCCAUGGGAAUCCUUCGAUCCGAGCGA&UCGCUUGGAUU------UAUCCAUGAU	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN12822_c0_g1_56_TPlot.pdf
TRINITY_DN1282_c0_g1:460	si_a645	TRINITY_DN1282_c0_g1	445	469	460	-29.40	-19.80	0.673469387755102	6.5	1-14,469-456;15-21,451-445	x-x,455-452[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	UUUCUGAGCUUUGUAUUGCUCAAAA&UUUUGAGUAAUAUA----UCGGGAA	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN1282_c0_g1_460_TPlot.pdf
TRINITY_DN1282_c0_g1:461	si_a644	TRINITY_DN1282_c0_g1	446	470	461	-29.30	-19.90	0.679180887372014	6.5	1-15,470-456;16-21,451-446	x-x,455-452[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	UUCUGAGCUUUGUAUUGCUCAAAAA&UUUUUGAGUAAUAUA----UCGGGA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN1282_c0_g1_461_TPlot.pdf
TRINITY_DN1282_c0_g1:462	si_a643	TRINITY_DN1282_c0_g1	447	471	462	-28.30	-18.70	0.660777385159011	7.5	2-16,470-456;17-21,451-447	1-1,471-471[UP5];x-x,455-452[BULt]	(((((....(((((((((((((((.&.)))))))))))))))----)))))	UCUGAGCUUUGUAUUGCUCAAAAAG&UUUUUUGAGUAAUAUA----UCGGG	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN1282_c0_g1_462_TPlot.pdf
TRINITY_DN1282_c0_g1:463	si_a642	TRINITY_DN1282_c0_g1	448	472	463	-25.90	-19.10	0.737451737451738	7	1-17,472-456;18-21,451-448	x-x,455-452[BULt]	((((....(((((((((((((((((&)))))))))))))))))----))))	CUGAGCUUUGUAUUGCUCAAAAAGA&UUUUUUUGAGUAAUAUA----UCGG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN1282_c0_g1_463_TPlot.pdf
TRINITY_DN1282_c0_g1:468	si_a637	TRINITY_DN1282_c0_g1	457	478	468	-25.80	-18.90	0.732558139534884	6	2-4,477-475;5-21,473-457	1-1,478-478[UP5];x-x,474-474[BULt]	(((((((((((((((((.(((.&.)))-)))))))))))))))))	GUAUUGCUCAAAAAGAUGUGAA&GUCG-AUUUUUUUGAGUAAUAU	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN1282_c0_g1_468_TPlot.pdf
TRINITY_DN1282_c0_g1:469	si_a636	TRINITY_DN1282_c0_g1	458	479	469	-26.30	-17.60	0.669201520912548	7.5	3-5,477-475;6-21,473-458	1-2,479-478[UP5];x-x,474-474[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	UAUUGCUCAAAAAGAUGUGAAG&UGUCG-AUUUUUUUGAGUAAUA	2	0.99997154569721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN1282_c0_g1_469_TPlot.pdf
TRINITY_DN1282_c0_g1:506	si_a789	TRINITY_DN1282_c0_g1	495	517	506	-24.80	-16.30	0.657258064516129	10	1-3,517-515;5-8,512-509;9-21,507-495	4-4,514-513[AILt];x-x,508-508[BULt]	(((((((((((((.((((..(((&)))-.))))-)))))))))))))	GUUGGAAAGUGGAUGAAACCGGA&UCU-AUUUU-UCUAUUUUCCAAU	3	0.999999999999951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1282_c0_g1_506_TPlot.pdf
TRINITY_DN1282_c0_g1:509	si_a787	TRINITY_DN1282_c0_g1	497	518	509	-26.30	-17.30	0.657794676806084	9	1-4,518-515;7-10,512-509;11-21,507-497	5-6,514-513[SIL];x-x,508-508[BULt]	(((((((((((.((((..((((&))))..))))-)))))))))))	UGGAAAGUGGAUGAAACCGGAG&CUUCUAUUUU-UCUAUUUUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1282_c0_g1_509_TPlot.pdf
TRINITY_DN1282_c0_g1:510	si_a786	TRINITY_DN1282_c0_g1	498	519	510	-26.60	-17.40	0.654135338345865	9	1-5,519-515;8-11,512-509;12-21,507-498	6-7,514-513[SIL];x-x,508-508[BULt]	((((((((((.((((..(((((&)))))..))))-))))))))))	GGAAAGUGGAUGAAACCGGAGA&UCUUCUAUUUU-UCUAUUUUCC	2	0.9999999999083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1282_c0_g1_510_TPlot.pdf
TRINITY_DN12831_c0_g2:313	si_a138	TRINITY_DN12831_c0_g2	302	327	313	-26.30	-17.70	0.673003802281369	11.5	1-7,327-321;8-17,315-306;19-21,304-302	x-x,320-316[BULt];18-18,305-305[SIL]	(((.((((((((((.....(((((((&)))))))-----)))))))))).)))	GACUACAACGAUUAUGUAAAUUACUA&UAGUAAU-----UAAUCGUUGUUGUU	1	0.0655142151487034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN12831_c0_g2_313_TPlot.pdf
TRINITY_DN12831_c1_g1:4967	si_s203	TRINITY_DN12831_c1_g1	4954	4976	4967	-35.50	-24.68	0.695211267605634	7	2-14,4975-4963;17-21,4958-4954	1-1,4976-4976[UP5];15-16,4962-4959[AILt]	(((((....(((((((((((((.&.)))))))))))))--..)))))	GGACAAGAAGCUGGUACAUUCUG&UGGAAUGUACCAGU--UGUGUUC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN12831_c1_g1_4967_TPlot.pdf
TRINITY_DN12831_c1_g1:4970	si_s200	TRINITY_DN12831_c1_g1	4959	4979	4970	-32.80	-21.70	0.661585365853659	11.5	5-18,4975-4962	1-4,4979-4976[UP5];19-21,4961-4959[UP3]	...((((((((((((((....&....))))))))))))))...	AGAAGCUGGUACAUUCUGUGG&UUUUGGAAUGUACCAGUUGUG	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN12831_c1_g1_4970_TPlot.pdf
TRINITY_DN12831_c1_g1:5327	si_a364	TRINITY_DN12831_c1_g1	5316	5337	5327	-27.70	-18.30	0.660649819494585	9	1-4,5337-5334;5-15,5332-5322	x-x,5333-5333[BULt];16-21,5321-5316[UP3]	......(((((((((((.((((&))))-)))))))))))......	GUACUAUGAUCCGAUCACAGAU&AUUU-UGAUCGGAUCAAAAAUG	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN12831_c1_g1_5327_TPlot.pdf
TRINITY_DN12831_c1_g1:5330	si_a361	TRINITY_DN12831_c1_g1	5319	5340	5330	-29.00	-19.80	0.682758620689655	9	3-7,5338-5334;8-18,5332-5322	1-2,5340-5339[UP5];x-x,5333-5333[BULt];19-21,5321-5319[UP3]	...(((((((((((.(((((..&..)))))-)))))))))))...	CUAUGAUCCGAUCACAGAUAAA&UCUAUUU-UGAUCGGAUCAAAA	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN12831_c1_g1_5330_TPlot.pdf
TRINITY_DN12831_c1_g1:5340	si_a356	TRINITY_DN12831_c1_g1	5324	5350	5340	-26.90	-17.90	0.66542750929368	13	2-7,5349-5344;8-12,5342-5338;13-21,5332-5324	1-1,5350-5350[UP5];x-x,5343-5343[BULt];x-x,5337-5333[BULt]	(((((((((.....(((((.((((((.&.))))))-)))))-----)))))))))	AUCCGAUCACAGAUAAAUACGAAUUAG&UUAAUUC-UAUUU-----UGAUCGGAU	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN12831_c1_g1_5340_TPlot.pdf
TRINITY_DN12833_c0_g1:121	si_s86	TRINITY_DN12833_c0_g1	111	131	121	-32.90	-21.60	0.656534954407295	6	1-5,131-127;6-17,125-114;19-20,113-112	x-x,126-126[BULt];18-18,x-x[BULq];21-21,111-111[UP3]	.((-((((((((((((.(((((&)))))-)))))))))))).)).	UGC-AGGAAGAAGAAACGGGAG&UUUCC-UUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN12833_c0_g1_121_TPlot.pdf
TRINITY_DN12833_c0_g1:129	si_a778	TRINITY_DN12833_c0_g1	119	138	129	-28.30	-19.00	0.671378091872792	6.5	1-12,138-127;16-21,124-119	13-15,126-125[AILq]	((((((..-((((((((((((&))))))))))))...))))))	GAAGAAAC-GGGAGUUGGAUC&GAUUCAACUCUUCUAUUUUUC	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN12833_c0_g1_129_TPlot.pdf
TRINITY_DN12833_c0_g2:155	si_a13	TRINITY_DN12833_c0_g2	144	164	155	-26.80	-18.80	0.701492537313433	9	1-4,164-161;7-16,158-149	5-6,160-159[SIL];17-21,148-144[UP3]	.....((((((((((..((((&))))..)))))))))).....	UGUUCUAAAUAGGCUAGCUCU&AGAGAAAGCCUAUUUAUUUUU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN12833_c0_g2_155_TPlot.pdf
TRINITY_DN12833_c3_g1:45	si_s814	TRINITY_DN12833_c3_g1	34	54	45	-26.60	-17.90	0.672932330827068	8	1-13,54-42	14-21,41-34[UP3]	........(((((((((((((&)))))))))))))........	GUACGGGAAAGAAAAGGUAAC&GUUACCUUUUCUUAAUAAUGA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN12833_c3_g1_45_TPlot.pdf
TRINITY_DN12833_c3_g1:46	si_s813	TRINITY_DN12833_c3_g1	35	55	46	-27.10	-20.00	0.738007380073801	7	1-14,55-42	15-21,41-35[UP3]	.......((((((((((((((&)))))))))))))).......	UACGGGAAAGAAAAGGUAACG&CGUUACCUUUUCUUAAUAAUG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN12833_c3_g1_46_TPlot.pdf
TRINITY_DN12833_c3_g1:47	si_s812	TRINITY_DN12833_c3_g1	36	56	47	-26.40	-21.40	0.810606060606061	6	1-15,56-42	16-21,41-36[UP3]	......(((((((((((((((&)))))))))))))))......	ACGGGAAAGAAAAGGUAACGA&UCGUUACCUUUUCUUAAUAAU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN12833_c3_g1_47_TPlot.pdf
TRINITY_DN12833_c3_g1:49	si_s810	TRINITY_DN12833_c3_g1	38	58	49	-27.90	-21.50	0.770609318996416	7	3-17,56-42	1-2,58-57[UP5];18-21,41-38[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGGAAAGAAAAGGUAACGACA&CUUCGUUACCUUUUCUUAAUA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN12833_c3_g1_49_TPlot.pdf
TRINITY_DN12833_c3_g1:56	si_s803	TRINITY_DN12833_c3_g1	45	65	56	-26.00	-19.70	0.757692307692308	4	1-7,65-59;10-21,56-45	8-9,58-57[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAAAGGUAACGACAAUAAAAU&AUUUUAUCUUCGUUACCUUUU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN12833_c3_g1_56_TPlot.pdf
TRINITY_DN12833_c3_g1:57	si_s802	TRINITY_DN12833_c3_g1	46	66	57	-26.40	-18.80	0.712121212121212	5	2-8,65-59;11-21,56-46	1-1,66-66[UP5];9-10,58-57[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	AAAGGUAACGACAAUAAAAUU&UAUUUUAUCUUCGUUACCUUU	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN12833_c3_g1_57_TPlot.pdf
TRINITY_DN12836_c0_g1:1170	si_s568	TRINITY_DN12836_c0_g1	1159	1179	1170	-30.60	-21.00	0.686274509803922	9.5	1-8,1179-1172;11-17,1169-1163	9-10,1171-1170[SIL];18-21,1162-1159[UP3]	....(((((((..((((((((&))))))))..)))))))....	CUCCUGUUCCUAAUCCCGAGA&UUUCGGGACAAGGAAUAAAAA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN12836_c0_g1_1170_TPlot.pdf
TRINITY_DN12836_c0_g1:1643	si_s480	TRINITY_DN12836_c0_g1	1632	1652	1643	-25.00	-17.50	0.7	11	1-12,1652-1641	13-21,1640-1632[UP3]	.........((((((((((((&)))))))))))).........	CAUGAUUAUGGUAUAGGAUCC&GGAUCCUAUAUUUAUUUAAAU	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN12836_c0_g1_1643_TPlot.pdf
TRINITY_DN12836_c0_g1:2093	si_a140	TRINITY_DN12836_c0_g1	2082	2104	2093	-25.20	-17.20	0.682539682539683	8.5	1-5,2104-2100;6-10,2097-2093;12-21,2091-2082	x-x,2099-2098[BULt];11-11,2092-2092[SIL]	((((((((((.(((((..(((((&)))))--))))).))))))))))	GAGACAGCAAAGAUUAUGGUUAC&GUAAU--UAAUCGUUGUUGUUUU	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN12836_c0_g1_2093_TPlot.pdf
TRINITY_DN12836_c0_g1:2094	si_a139	TRINITY_DN12836_c0_g1	2083	2105	2094	-25.90	-17.30	0.667953667953668	8	1-6,2105-2100;7-11,2097-2093;13-21,2091-2083	x-x,2099-2098[BULt];12-12,2092-2092[SIL]	(((((((((.(((((..((((((&))))))--))))).)))))))))	AGACAGCAAAGAUUAUGGUUACU&AGUAAU--UAAUCGUUGUUGUUU	3	0.999761340034339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN12836_c0_g1_2094_TPlot.pdf
TRINITY_DN1283_c0_g1:2482	si_a898	TRINITY_DN1283_c0_g1	2471	2491	2482	-20.50	-14.10	0.68780487804878	9	1-15,2491-2477	16-21,2476-2471[UP3]	......(((((((((((((((&)))))))))))))))......	AAAUCAAUUAUUUAUUGUUGC&GUAAUAAUAAGUAAUAUAAAA	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN1283_c0_g1_2482_TPlot.pdf
TRINITY_DN1283_c0_g1:2485	si_a895	TRINITY_DN1283_c0_g1	2474	2494	2485	-21.70	-14.20	0.654377880184332	10.5	4-18,2491-2477	1-3,2494-2492[UP5];19-21,2476-2474[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCAAUUAUUUAUUGUUGCAUG&AUAGUAAUAAUAAGUAAUAUA	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN1283_c0_g1_2485_TPlot.pdf
TRINITY_DN1284_c0_g1:2267	si_a784	TRINITY_DN1284_c0_g1	2255	2276	2267	-24.70	-16.10	0.651821862348178	8.5	3-15,2274-2262;16-19,2260-2257	1-2,2276-2275[UP5];x-x,2261-2261[BULt];20-21,2256-2255[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	AUAAUAUGAGAAGUAGAGGAAA&ACUCUUCUAUUUUUC-UAUUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1284_c0_g1_2267_TPlot.pdf
TRINITY_DN1284_c0_g1:2273	si_a778	TRINITY_DN1284_c0_g1	2262	2285	2273	-28.30	-20.82	0.735689045936396	12	1-6,2285-2280;9-21,2274-2262	7-8,2279-2275[AILt]	(((((((((((((.....((((((&))))))---..)))))))))))))	GAGAAGUAGAGGAAAUAGUGAAUC&GAUUCA---ACUCUUCUAUUUUUC	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN1284_c0_g1_2273_TPlot.pdf
TRINITY_DN1284_c0_g1:2274	si_a777	TRINITY_DN1284_c0_g1	2263	2286	2274	-27.00	-17.92	0.663703703703704	13	2-7,2285-2280;10-21,2274-2263	1-1,2286-2286[UP5];8-9,2279-2275[AILt]	((((((((((((.....((((((.&.))))))---..))))))))))))	AGAAGUAGAGGAAAUAGUGAAUCG&UGAUUCA---ACUCUUCUAUUUUU	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN1284_c0_g1_2274_TPlot.pdf
TRINITY_DN1284_c0_g1:2424	si_s75	TRINITY_DN1284_c0_g1	2413	2436	2424	-24.00	-16.00	0.666666666666667	11	1-7,2436-2430;8-19,2426-2415	x-x,2429-2427[BULt];20-21,2414-2413[UP3]	..((((((((((((...(((((((&)))))))---))))))))))))..	GAAGAGGAAAGAAAAUUGAGAAUG&UAUUUUU---UUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1284_c0_g1_2424_TPlot.pdf
TRINITY_DN12857_c0_g1:1147	si_s791	TRINITY_DN12857_c0_g1	1134	1156	1147	-28.50	-18.58	0.651929824561403	13	4-12,1153-1145;15-21,1140-1134	1-3,1156-1154[UP5];13-14,1144-1141[AILt]	(((((((....(((((((((...&...)))))))))--..)))))))	AGGUGAACAACGCGAGCUUGAUC&AAACAAGCUCGU--AUUUUAUCU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN12857_c0_g1_1147_TPlot.pdf
TRINITY_DN12857_c0_g1:186	si_s806	TRINITY_DN12857_c0_g1	175	195	186	-28.60	-18.90	0.660839160839161	8.5	1-8,195-188;10-18,186-178	9-9,187-187[SIL];19-21,177-175[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UGUAAGAGGUGGAGGAGAUAA&UUAUCUUCGUUACCUUUUCUU	4	0.999999999999344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN12857_c0_g1_186_TPlot.pdf
TRINITY_DN12858_c3_g1:1959	si_s45	TRINITY_DN12858_c3_g1	1948	1969	1959	-24.70	-16.30	0.659919028340081	7	2-8,1968-1962;9-18,1960-1951	1-1,1969-1969[UP5];x-x,1961-1961[BULt];19-21,1950-1948[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	UAAUUGAAAUCCACAUUGUUAU&UUAAUAAU-UGGAUUUCAAGUU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN12858_c3_g1_1959_TPlot.pdf
TRINITY_DN12858_c3_g1:1960	si_s44	TRINITY_DN12858_c3_g1	1949	1970	1960	-24.70	-16.30	0.659919028340081	8	3-9,1968-1962;10-19,1960-1951	1-2,1970-1969[UP5];x-x,1961-1961[BULt];20-21,1950-1949[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	AAUUGAAAUCCACAUUGUUAUU&UUUAAUAAU-UGGAUUUCAAGU	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN12858_c3_g1_1960_TPlot.pdf
TRINITY_DN12859_c0_g2:2305	si_a324	TRINITY_DN12859_c0_g2	2294	2313	2305	-27.50	-19.10	0.694545454545455	9	1-4,2313-2310;6-7,2308-2307;10-21,2305-2294	5-5,2309-2309[SIL];8-9,2306-2306[AILq]	((((((((((((.-((.((((&)))).))..))))))))))))	CGGGGAGUGGAAU-AUGAUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN12859_c0_g2_2305_TPlot.pdf
TRINITY_DN12861_c0_g1:77	si_s78	TRINITY_DN12861_c0_g1	65	86	77	-26.20	-18.70	0.713740458015267	6.5	1-11,86-76;13-21,73-65	12-12,75-74[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AGAAGAAGGAAAAAGAAGAGAA&UUUUUUUCUUU-CCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12861_c0_g1_77_TPlot.pdf
TRINITY_DN12867_c0_g1:755	si_a471	TRINITY_DN12867_c0_g1	745	764	755	-21.10	-16.20	0.767772511848341	5.5	2-16,763-749;18-20,748-746	1-1,764-764[UP5];17-17,x-x[BULq];21-21,745-745[UP3]	.(((-(((((((((((((((.&.))))))))))))))).))).	CUGU-ACAAUAAUUGCAUGUA&AAUAUGUAAUUAUUGUUAUAU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN12867_c0_g1_755_TPlot.pdf
TRINITY_DN1286_c0_g1:1293	si_a410	TRINITY_DN1286_c0_g1	1281	1302	1293	-17.80	-11.70	0.657303370786517	5.5	1-11,1302-1292;12-19,1290-1283	x-x,1291-1291[BULt];20-21,1282-1281[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AAUGUUUAAAUUAUAAAUAAAA&UUUUGUUUAUA-UUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1286_c0_g1_1293_TPlot.pdf
TRINITY_DN1286_c0_g1:299	si_a476	TRINITY_DN1286_c0_g1	288	308	299	-22.90	-15.00	0.655021834061135	5.5	1-9,308-300;11-19,298-290	10-10,299-299[SIL];20-21,289-288[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	CAUCUAUAUAAAAGUAAUUAU&GUAAUUAUUGUUAUAUAGAAU	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN1286_c0_g1_299_TPlot.pdf
TRINITY_DN1286_c0_g1:387	si_s628	TRINITY_DN1286_c0_g1	375	397	387	-35.40	-23.80	0.672316384180791	6	1-5,397-393;6-13,391-384;14-21,382-375	x-x,392-392[BULt];x-x,383-383[BULt]	((((((((.((((((((.(((((&)))))-))))))))-))))))))	AAACGUUUAACGGGAAGAAUCGC&GCGAU-CUUUUCGU-AGGCGUUU	4	0.999888699892308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN1286_c0_g1_387_TPlot.pdf
TRINITY_DN12875_c0_g1:722	si_s78	TRINITY_DN12875_c0_g1	711	731	722	-26.20	-17.60	0.67175572519084	16	9-21,723-711	1-8,731-724[UP5]	(((((((((((((........&........)))))))))))))	GGAAGAAGGGAAAAAGAUGUA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12875_c0_g1_722_TPlot.pdf
TRINITY_DN12877_c0_g2:5080	si_a898	TRINITY_DN12877_c0_g2	5069	5089	5080	-20.50	-14.30	0.697560975609756	8.5	1-12,5089-5078;14-17,5076-5073	13-13,5077-5077[SIL];18-21,5072-5069[UP3]	....((((.((((((((((((&)))))))))))).))))....	UGAAAUGUCACUUGUUGUUGC&GUAAUAAUAAGUAAUAUAAAA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN12877_c0_g2_5080_TPlot.pdf
TRINITY_DN12877_c2_g1:30	si_s571	TRINITY_DN12877_c2_g1	20	40	30	-29.60	-20.00	0.675675675675676	4	2-7,39-34;8-12,32-28;14-21,27-20	1-1,40-40[UP5];x-x,33-33[BULt];13-13,x-x[BULq]	((((((((-(((((.((((((.&.))))))-))))).))))))))	AUUUUUUU-UUCCUGUGUCCCU&CGGGACA-AGGAAUAAAAAAAU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN12877_c2_g1_30_TPlot.pdf
TRINITY_DN12883_c0_g5:219	si_a181	TRINITY_DN12883_c0_g5	207	228	219	-32.00	-21.50	0.671875	10.5	2-6,227-223;9-11,220-218;12-20,216-208	1-1,228-228[UP5];7-8,222-221[SIL];x-x,217-217[BULt];21-21,207-207[UP3]	.(((((((((.(((..(((((.&.)))))..)))-))))))))).	AGGGGAAAGAUUGUGUUCUGGG&UCUAGAUAAUA-UCUUUCCCUG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN12883_c0_g5_219_TPlot.pdf
TRINITY_DN1288_c0_g1:2116	si_a350	TRINITY_DN1288_c0_g1	2105	2126	2116	-20.30	-13.40	0.660098522167488	8	3-8,2124-2119;9-21,2117-2105	1-2,2126-2125[UP5];x-x,2118-2118[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UUAAAAUGGAAUUCGGUAUUAA&AAAAUAUU-AAUUCUAUUUUGA	3	0.999992202311982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1288_c0_g1_2116_TPlot.pdf
TRINITY_DN1288_c0_g1:3296	si_a786	TRINITY_DN1288_c0_g1	3285	3309	3296	-26.60	-18.70	0.703007518796992	11	1-5,3309-3305;6-20,3300-3286	x-x,3304-3301[BULt];21-21,3285-3285[UP3]	.(((((((((((((((....(((((&)))))----))))))))))))))).	AGAAAAUAGAAGAAUAUAAUGAGGA&UCUUC----UAUUUUUCUAUUUUCC	4	0.999999306351614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1288_c0_g1_3296_TPlot.pdf
TRINITY_DN1288_c0_g1:3425	si_s509	TRINITY_DN1288_c0_g1	3414	3435	3425	-22.80	-15.40	0.675438596491228	10.5	3-9,3433-3427;11-19,3424-3416	1-2,3435-3434[UP5];10-10,3426-3425[AILt];20-21,3415-3414[UP3]	..(((((((((..(((((((..&..)))))))-.)))))))))..	AUUUGAGAAUGAGAGAAUUGGA&AACAAUUCU-AUAUUCUUAAUU	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN1288_c0_g1_3425_TPlot.pdf
TRINITY_DN1288_c0_g1:392	si_a77	TRINITY_DN1288_c0_g1	381	401	392	-22.20	-14.60	0.657657657657658	10.5	4-15,398-387;18-20,384-382	1-3,401-399[UP5];16-17,386-385[SIL];21-21,381-381[UP3]	.(((..((((((((((((...&...))))))))))))..))).	ACUUUUUGAUGAAGAACGCAG&AAUUGUUUUUCAUUAUUAAGA	4	0.999999997624242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN1288_c0_g1_392_TPlot.pdf
TRINITY_DN1288_c0_g1:681	si_s77	TRINITY_DN1288_c0_g1	669	690	681	-25.50	-18.70	0.733333333333333	7	1-13,690-678;14-19,676-671	x-x,677-677[BULt];20-21,670-669[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	GCAGAAAGAGAAGGAAGAGGAA&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1288_c0_g1_681_TPlot.pdf
TRINITY_DN1288_c0_g1:682	si_s76	TRINITY_DN1288_c0_g1	670	691	682	-23.60	-18.70	0.792372881355932	7	2-14,690-678;15-20,676-671	1-1,691-691[UP5];x-x,677-677[BULt];21-21,670-670[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	CAGAAAGAGAAGGAAGAGGAAG&AUUUUUUUUCUUUC-CUUUCUU	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1288_c0_g1_682_TPlot.pdf
TRINITY_DN1288_c0_g2:195	si_a403	TRINITY_DN1288_c0_g2	184	204	195	-22.00	-15.08	0.685454545454545	6.5	1-6,204-199;10-21,195-184	7-9,198-196[SIL]	((((((((((((...((((((&))))))...))))))))))))	GAAUAUAAACAAUGAAAUUCU&AGAAUUGUUUUGUUUAUAUUU	4	0.999999996483306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN1288_c0_g2_195_TPlot.pdf
TRINITY_DN12893_c0_g1:1969	si_s649	TRINITY_DN12893_c0_g1	1958	1978	1969	-43.80	-28.80	0.657534246575343	6.5	1-2,1978-1977;3-9,1975-1969;11-12,1968-1967;14-20,1965-1959	x-x,1976-1976[BULt];10-10,x-x[BULq];13-13,1966-1966[SIL];21-21,1958-1958[UP3]	.(((((((.((-(((((((.((&))-))))))).)).))))))).	CCCUCCGAAUG-AUCGAGGCGC&GC-CCUCGAUACAAUCGGGGGA	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN12893_c0_g1_1969_TPlot.pdf
TRINITY_DN12893_c1_g1:10390	si_s647	TRINITY_DN12893_c1_g1	10379	10399	10390	-41.20	-29.80	0.723300970873786	9	3-10,10397-10390;13-13,10387-10387;16-21,10384-10379	1-2,10399-10398[UP5];11-12,10389-10388[SIL];14-15,10386-10385[SIL]	((((((..(..((((((((..&..))))))))..)..))))))	CCCCGAAGGCUUCGAGGGCUU&UUGCCCUCGAUACAAUCGGGG	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s647_TRINITY_DN12893_c1_g1_10390_TPlot.pdf
TRINITY_DN12893_c1_g1:8102	si_a145	TRINITY_DN12893_c1_g1	8091	8111	8102	-28.10	-18.60	0.661921708185053	11.5	4-13,8108-8099;16-20,8096-8092	1-3,8111-8109[UP5];14-15,8098-8097[SIL];21-21,8091-8091[UP3]	.(((((..((((((((((...&...))))))))))..))))).	CCCUUAUCGCGAUAGCGAACU&UAAUCGUUGUUGUUUUAAGGU	4	0.999992998292024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN12893_c1_g1_8102_TPlot.pdf
TRINITY_DN12893_c1_g1:8532	si_s641	TRINITY_DN12893_c1_g1	8520	8541	8532	-39.20	-26.60	0.678571428571429	5.5	3-13,8539-8529;15-18,8527-8524;19-21,8522-8520	1-2,8541-8540[UP5];14-14,8528-8528[SIL];x-x,8523-8523[BULt]	(((.((((.(((((((((((..&..))))))))))).))))-)))	UUGAUGUCAAGGGCAAACGCGU&AGGCGUUUGCCCUCGAUA-CAA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN12893_c1_g1_8532_TPlot.pdf
TRINITY_DN12893_c1_g1:8554	si_a53	TRINITY_DN12893_c1_g1	8543	8563	8554	-39.00	-25.40	0.651282051282051	11	4-16,8560-8548	1-3,8563-8561[UP5];17-21,8547-8543[UP3]	.....(((((((((((((...&...))))))))))))).....	CUCAUGCGAGUCGACUUCAAC&CUAGGAGUCGACUCGCUUCUU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN12893_c1_g1_8554_TPlot.pdf
TRINITY_DN12893_c1_g1:8641	si_s559	TRINITY_DN12893_c1_g1	8630	8650	8641	-27.80	-18.50	0.665467625899281	17.5	9-21,8642-8630	1-8,8650-8643[UP5]	(((((((((((((........&........)))))))))))))	CUUGUCCUGGAGAAGGGCGCG&AAUUAAUAUUUUCGGGACAAG	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN12893_c1_g1_8641_TPlot.pdf
TRINITY_DN12893_c1_g1:8870	si_s87	TRINITY_DN12893_c1_g1	8856	8879	8870	-32.90	-23.20	0.70516717325228	8.5	1-12,8879-8868;13-18,8865-8860;19-19,8858-8858	x-x,8867-8866[BULt];x-x,8859-8859[BULt];20-21,8857-8856[UP3]	..(.((((((..((((((((((((&))))))))))))--))))))-)..	ACGUCGAGGAAGAGAAGAAGGGAA&UUCCUUUCUUCU--UCUUCG-CUU	3	0.999999999323675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN12893_c1_g1_8870_TPlot.pdf
TRINITY_DN12893_c1_g1:8871	si_s86	TRINITY_DN12893_c1_g1	8857	8880	8871	-32.90	-23.30	0.708206686930091	6.5	2-13,8879-8868;14-19,8865-8860;20-20,8858-8858	1-1,8880-8880[UP5];x-x,8867-8866[BULt];x-x,8859-8859[BULt];21-21,8857-8857[UP3]	.(.((((((..((((((((((((.&.))))))))))))--))))))-).	CGUCGAGGAAGAGAAGAAGGGAAC&UUUCCUUUCUUCU--UCUUCG-CU	3	0.999999996849843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN12893_c1_g1_8871_TPlot.pdf
TRINITY_DN12893_c1_g1:8874	si_s83	TRINITY_DN12893_c1_g1	8864	8884	8874	-30.90	-21.40	0.692556634304207	7	2-3,8883-8882;5-16,8879-8868;18-21,8867-8864	1-1,8884-8884[UP5];4-4,8881-8880[AILt];17-17,x-x[BULq]	((((-((((((((((((..((.&.))-.)))))))))))).))))	GAAG-AGAAGAAGGGAACUGAC&UUC-UUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN12893_c1_g1_8874_TPlot.pdf
TRINITY_DN12893_c1_g1:9058	si_a72	TRINITY_DN12893_c1_g1	9047	9067	9058	-21.90	-14.70	0.671232876712329	7.5	1-6,9067-9062;8-9,9060-9059;11-20,9057-9048	7-7,9061-9061[SIL];10-10,9058-9058[SIL];21-21,9047-9047[UP3]	.((((((((((.((.((((((&)))))).)).)))))))))).	UUGAUGGAGAAGGAAUUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999987715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN12893_c1_g1_9058_TPlot.pdf
TRINITY_DN12893_c1_g1:9311	si_a326	TRINITY_DN12893_c1_g1	9300	9322	9311	-26.20	-17.94	0.684732824427481	14.5	1-8,9322-9315;13-21,9308-9300	9-12,9314-9309[AILt]	(((((((((......((((((((&))))))))--....)))))))))	GACGAGGAAGGCGCCAAGAUCGU&AUGAUUUU--UUUAUUCCUUGUC	3	0.999998031553349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN12893_c1_g1_9311_TPlot.pdf
TRINITY_DN12893_c1_g1:9408	si_a557	TRINITY_DN12893_c1_g1	9398	9417	9408	-33.40	-22.00	0.658682634730539	6.5	1-11,9417-9407;14-21,9405-9398	12-13,9406-9406[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	AUUCGCGGA-AGAUGGAGAGA&UUUCUUUAUCUCCCCGUGAAU	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN12893_c1_g1_9408_TPlot.pdf
TRINITY_DN12893_c1_g1:9409	si_a556	TRINITY_DN12893_c1_g1	9399	9418	9409	-33.40	-21.80	0.652694610778443	5.5	1-12,9418-9407;15-21,9405-9399	13-14,9406-9406[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	UUCGCGGA-AGAUGGAGAGAU&AUUUCUUUAUCUCCCCGUGAA	2	0.996395813788016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN12893_c1_g1_9409_TPlot.pdf
TRINITY_DN12893_c1_g1:9411	si_a790	TRINITY_DN12893_c1_g1	9400	9420	9411	-25.80	-17.40	0.674418604651163	10.5	3-17,9418-9404	1-2,9420-9419[UP5];18-21,9403-9400[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCGCGGAAGAUGGAGAGAUCA&CUAUUUUUCUAUUUUCCAAUC	3	0.999995393414573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN12893_c1_g1_9411_TPlot.pdf
TRINITY_DN12893_c1_g1:9412	si_a789	TRINITY_DN12893_c1_g1	9401	9423	9412	-24.80	-18.20	0.733870967741935	10.5	1-3,9423-9421;4-18,9418-9404	x-x,9420-9419[BULt];19-21,9403-9401[UP3]	...(((((((((((((((..(((&)))--)))))))))))))))...	CGCGGAAGAUGGAGAGAUCAAGA&UCU--AUUUUUCUAUUUUCCAAU	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN12893_c1_g1_9412_TPlot.pdf
TRINITY_DN12893_c1_g1:9413	si_a788	TRINITY_DN12893_c1_g1	9402	9424	9413	-24.80	-18.40	0.741935483870968	10.5	2-4,9423-9421;5-19,9418-9404	1-1,9424-9424[UP5];x-x,9420-9419[BULt];20-21,9403-9402[UP3]	..(((((((((((((((..(((.&.)))--)))))))))))))))..	GCGGAAGAUGGAGAGAUCAAGAU&UUCU--AUUUUUCUAUUUUCCAA	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN12893_c1_g1_9413_TPlot.pdf
TRINITY_DN12893_c1_g1:9414	si_a787	TRINITY_DN12893_c1_g1	9403	9425	9414	-26.30	-18.40	0.699619771863118	11	3-5,9423-9421;6-20,9418-9404	1-2,9425-9424[UP5];x-x,9420-9419[BULt];21-21,9403-9403[UP3]	.(((((((((((((((..(((..&..)))--))))))))))))))).	CGGAAGAUGGAGAGAUCAAGAUU&CUUCU--AUUUUUCUAUUUUCCA	3	0.999999912866153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN12893_c1_g1_9414_TPlot.pdf
TRINITY_DN12893_c1_g1:9415	si_a550	TRINITY_DN12893_c1_g1	9404	9426	9415	-30.90	-20.50	0.663430420711974	7	1-6,9426-9421;7-18,9418-9407;20-21,9405-9404	x-x,9420-9419[BULt];19-19,9406-9406[SIL]	((.((((((((((((..((((((&))))))--)))))))))))).))	GGAAGAUGGAGAGAUCAAGAUUG&CAAUCU--AUUUCUUUAUCUCCC	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN12893_c1_g1_9415_TPlot.pdf
TRINITY_DN12893_c1_g1:9416	si_a549	TRINITY_DN12893_c1_g1	9404	9427	9416	-29.50	-20.30	0.688135593220339	8	2-7,9426-9421;8-19,9418-9407;20-21,9405-9404	1-1,9427-9427[UP5];x-x,9420-9419[BULt];x-x,9406-9406[BULt]	((.((((((((((((..((((((.&.))))))--))))))))))))-))	GGAAGAUGGAGAGAUCAAGAUUGU&UCAAUCU--AUUUCUUUAUCU-CC	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN12893_c1_g1_9416_TPlot.pdf
TRINITY_DN12893_c1_g1:9418	si_a547	TRINITY_DN12893_c1_g1	9407	9430	9418	-26.90	-17.60	0.654275092936803	10	1-2,9430-9429;4-9,9426-9421;10-21,9418-9407	3-3,9428-9427[AILt];x-x,9420-9419[BULt]	((((((((((((..((((((..((&))-.))))))--))))))))))))	AGAUGGAGAGAUCAAGAUUGUCAC&GU-UCAAUCU--AUUUCUUUAUCU	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN12893_c1_g1_9418_TPlot.pdf
TRINITY_DN12893_c1_g1:9421	si_a546	TRINITY_DN12893_c1_g1	9408	9431	9421	-28.60	-20.20	0.706293706293706	9.5	1-3,9431-9429;5-10,9426-9421;11-21,9418-9408	4-4,9428-9427[AILt];x-x,9420-9419[BULt]	(((((((((((..((((((..(((&)))-.))))))--)))))))))))	GAUGGAGAGAUCAAGAUUGUCACC&GGU-UCAAUCU--AUUUCUUUAUC	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN12893_c1_g1_9421_TPlot.pdf
TRINITY_DN12893_c1_g1:9422	si_a545	TRINITY_DN12893_c1_g1	9409	9432	9422	-28.10	-19.10	0.679715302491103	9.5	1-4,9432-9429;6-11,9426-9421;12-21,9418-9409	5-5,9428-9427[AILt];x-x,9420-9419[BULt]	((((((((((..((((((..((((&))))-.))))))--))))))))))	AUGGAGAGAUCAAGAUUGUCACCG&CGGU-UCAAUCU--AUUUCUUUAU	2	0.97326627254944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN12893_c1_g1_9422_TPlot.pdf
TRINITY_DN12893_c1_g1:9423	si_a544	TRINITY_DN12893_c1_g1	9410	9433	9423	-28.90	-19.30	0.667820069204152	9.5	1-5,9433-9429;7-12,9426-9421;13-21,9418-9410	6-6,9428-9427[AILt];x-x,9420-9419[BULt]	(((((((((..((((((..(((((&)))))-.))))))--)))))))))	UGGAGAGAUCAAGAUUGUCACCGA&UCGGU-UCAAUCU--AUUUCUUUA	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN12893_c1_g1_9423_TPlot.pdf
TRINITY_DN12893_c1_g1:9648	si_a499	TRINITY_DN12893_c1_g1	9637	9655	9648	-35.20	-23.30	0.661931818181818	10	1-5,9655-9651;9-21,9649-9637	6-8,9650-9650[AILq]	(((((((((((((.--(((((&)))))...)))))))))))))	UCGGGGGAGGCGAU--ACGGC&GUCGUUUUUCGUCUUCCUUGG	3	0.999999999964799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN12893_c1_g1_9648_TPlot.pdf
TRINITY_DN12893_c1_g1:9649	si_a498	TRINITY_DN12893_c1_g1	9638	9656	9649	-33.50	-22.20	0.662686567164179	10	2-6,9655-9651;10-21,9649-9638	1-1,9656-9656[UP5];7-9,9650-9650[AILq]	((((((((((((.--(((((.&.)))))...))))))))))))	CGGGGGAGGCGAU--ACGGCC&UGUCGUUUUUCGUCUUCCUUG	3	0.999999999999537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN12893_c1_g1_9649_TPlot.pdf
TRINITY_DN12893_c1_g1:9971	si_a589	TRINITY_DN12893_c1_g1	9960	9980	9971	-30.60	-20.10	0.656862745098039	8.5	3-18,9978-9963	1-2,9980-9979[UP5];19-21,9962-9960[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUCGAUUCUGUCUUUUUUGCU&AACAAGAAGGACAGAAUUUUC	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a589_TRINITY_DN12893_c1_g1_9971_TPlot.pdf
TRINITY_DN12893_c1_g1:9973	si_a587	TRINITY_DN12893_c1_g1	9962	9982	9973	-30.80	-20.10	0.652597402597403	10.5	5-20,9978-9963	1-4,9982-9979[UP5];21-21,9962-9962[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAUUCUGUCUUUUUUGCUUU&GUAACAAGAAGGACAGAAUUU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a587_TRINITY_DN12893_c1_g1_9973_TPlot.pdf
TRINITY_DN1289_c0_g1:1362	si_s367	TRINITY_DN1289_c0_g1	1352	1371	1362	-39.40	-26.10	0.66243654822335	7.5	1-3,1371-1369;5-11,1367-1361;13-20,1360-1353	4-4,1368-1368[SIL];12-12,x-x[BULq];21-21,1352-1352[UP3]	.((((((((-(((((((.(((&))).))))))).)))))))).	AGCGCGAGC-AUUGGUUGGAU&AUUGAACCGAUCGCUCGCGUG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN1289_c0_g1_1362_TPlot.pdf
TRINITY_DN1289_c0_g1:1364	si_s365	TRINITY_DN1289_c0_g1	1354	1373	1364	-39.60	-26.50	0.669191919191919	7	2-5,1372-1369;7-13,1367-1361;15-21,1360-1354	1-1,1373-1373[UP5];6-6,1368-1368[SIL];14-14,x-x[BULq]	(((((((-(((((((.((((.&.)))).))))))).)))))))	CGCGAGC-AUUGGUUGGAUUA&AGAUUGAACCGAUCGCUCGCG	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s365_TRINITY_DN1289_c0_g1_1364_TPlot.pdf
TRINITY_DN1289_c0_g1:2461	si_s697	TRINITY_DN1289_c0_g1	2450	2470	2461	-26.90	-18.80	0.698884758364312	8	3-13,2468-2458;16-21,2455-2450	1-2,2470-2469[UP5];14-15,2457-2456[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UCAUUAUCGAGUCGGCUAAAA&AAUUAGUCGAUUUAUUAGUGA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN1289_c0_g1_2461_TPlot.pdf
TRINITY_DN1289_c0_g1:2624	si_s81	TRINITY_DN1289_c0_g1	2613	2633	2624	-28.90	-18.80	0.650519031141869	4	1-9,2633-2625;11-14,2623-2620;16-20,2618-2614	10-10,2624-2624[SIL];15-15,2619-2619[SIL];21-21,2613-2613[UP3]	.(((((.((((.(((((((((&))))))))).)))).))))).	UGAAGAUGAAAAGAAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1289_c0_g1_2624_TPlot.pdf
TRINITY_DN1289_c0_g1:2625	si_s80	TRINITY_DN1289_c0_g1	2614	2634	2625	-28.20	-18.60	0.659574468085106	4	2-10,2633-2625;12-15,2623-2620;17-21,2618-2614	1-1,2634-2634[UP5];11-11,2624-2624[SIL];16-16,2619-2619[SIL]	(((((.((((.(((((((((.&.))))))))).)))).)))))	GAAGAUGAAAAGAAAGAAAAG&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1289_c0_g1_2625_TPlot.pdf
TRINITY_DN1289_c0_g1:2626	si_s79	TRINITY_DN1289_c0_g1	2615	2635	2626	-26.20	-17.30	0.66030534351145	4	1-11,2635-2625;13-16,2623-2620;18-21,2618-2615	12-12,2624-2624[SIL];17-17,2619-2619[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	AAGAUGAAAAGAAAGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1289_c0_g1_2626_TPlot.pdf
TRINITY_DN1289_c0_g1:2627	si_s78	TRINITY_DN1289_c0_g1	2616	2636	2627	-26.20	-17.10	0.652671755725191	3	1-12,2636-2625;14-17,2623-2620;19-21,2618-2616	13-13,2624-2624[SIL];18-18,2619-2619[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	AGAUGAAAAGAAAGAAAAGAA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1289_c0_g1_2627_TPlot.pdf
TRINITY_DN1289_c0_g1:37	si_s666	TRINITY_DN1289_c0_g1	26	46	37	-31.30	-21.80	0.696485623003195	4.5	1-15,46-32;18-20,29-27	16-17,31-30[SIL];21-21,26-26[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	AUUUUCAAUCAAUUUGAUCCC&GGGAUCGAAUUGAUUAUAGAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN1289_c0_g1_37_TPlot.pdf
TRINITY_DN1289_c0_g1:39	si_s664	TRINITY_DN1289_c0_g1	28	48	39	-35.00	-23.20	0.662857142857143	7	2-17,47-32	1-1,48-48[UP5];18-21,31-28[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUCAAUCAAUUUGAUCCCUG&GGGGGAUCGAAUUGAUUAUAG	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s664_TRINITY_DN1289_c0_g1_39_TPlot.pdf
TRINITY_DN1289_c0_g1:40	si_s663	TRINITY_DN1289_c0_g1	29	49	40	-34.80	-23.20	0.666666666666667	8	3-18,47-32	1-2,49-48[UP5];19-21,31-29[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCAAUCAAUUUGAUCCCUGA&CGGGGGAUCGAAUUGAUUAUA	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s663_TRINITY_DN1289_c0_g1_40_TPlot.pdf
TRINITY_DN1289_c0_g1:41	si_s662	TRINITY_DN1289_c0_g1	30	50	41	-35.40	-23.20	0.655367231638418	9	4-19,47-32	1-3,50-48[UP5];20-21,31-30[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCAAUCAAUUUGAUCCCUGAA&UCGGGGGAUCGAAUUGAUUAU	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN1289_c0_g1_41_TPlot.pdf
TRINITY_DN1289_c0_g1:770	si_s101	TRINITY_DN1289_c0_g1	759	779	770	-32.50	-21.50	0.661538461538462	9.5	4-11,776-769;13-19,767-761	1-3,779-777[UP5];12-12,768-768[SIL];20-21,760-759[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	GCUUUUCUAUUCCGAAGCUGA&UUCGCUUCGGAUUGGAAAAUA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN1289_c0_g1_770_TPlot.pdf
TRINITY_DN128_c0_g1:1598	si_s21	TRINITY_DN128_c0_g1	1587	1607	1598	-27.40	-18.30	0.667883211678832	12	5-18,1603-1590	1-4,1607-1604[UP5];19-21,1589-1587[UP3]	...((((((((((((((....&....))))))))))))))...	AUCAGUUGCAAUCGAUGCUGC&ACUAUAUUGAUUGCAACUAAA	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN128_c0_g1_1598_TPlot.pdf
TRINITY_DN12908_c0_g1:48	si_s201	TRINITY_DN12908_c0_g1	38	58	48	-33.60	-22.90	0.681547619047619	6.5	1-6,58-53;8-17,50-41;19-21,40-38	7-7,52-51[AILt];18-18,x-x[BULq]	(((-((((((((((..((((((&))))))-.)))))))))).)))	ACG-AACUGGUGCAGCUCCAAA&UUUGGA-AUGUACCAGUUGUGU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN12908_c0_g1_48_TPlot.pdf
TRINITY_DN12908_c0_g1:51	si_s198	TRINITY_DN12908_c0_g1	40	61	51	-30.80	-23.20	0.753246753246753	8.5	3-9,59-53;11-20,50-41	1-2,61-60[UP5];10-10,52-51[AILt];21-21,40-40[UP3]	.((((((((((..(((((((..&..)))))))-.)))))))))).	GAACUGGUGCAGCUCCAAAAGA&UAUUUUGGA-AUGUACCAGUUG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN12908_c0_g1_51_TPlot.pdf
TRINITY_DN12908_c0_g2:125	si_s196	TRINITY_DN12908_c0_g2	113	134	125	-29.30	-21.80	0.744027303754266	11.5	5-11,130-124;13-21,121-113	1-4,134-131[UP5];12-12,123-122[AILt]	(((((((((..(((((((....&....)))))))-.)))))))))	ACUGGUGCAGCUCCAAAAGAUA&AUUAUUUUGGA-AUGUACCAGU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN12908_c0_g2_125_TPlot.pdf
TRINITY_DN1290_c0_g1:1075	si_s433	TRINITY_DN1290_c0_g1	1064	1084	1075	-21.10	-15.70	0.744075829383886	6.5	3-13,1082-1072;15-21,1070-1064	1-2,1084-1083[UP5];14-14,1071-1071[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AUGUGGUCUGUGAUUAUUGAC&AACAAUAAUUACAUAUUAUAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN1290_c0_g1_1075_TPlot.pdf
TRINITY_DN12911_c0_g1:2773	si_s74	TRINITY_DN12911_c0_g1	2757	2782	2773	-25.00	-16.70	0.668	11	1-10,2782-2773;11-14,2771-2768;15-21,2763-2757	x-x,2772-2772[BULt];x-x,2767-2764[BULt]	(((((((....((((.((((((((((&))))))))))-))))----)))))))	GAGAGGGCCAAAAGACGGGAAGAUAG&CUAUUUUUUU-UCUU----UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12911_c0_g1_2773_TPlot.pdf
TRINITY_DN12913_c0_g1:2130	si_s491	TRINITY_DN12913_c0_g1	2119	2139	2130	-19.50	-18.00	0.923076923076923	2	1-20,2139-2120	21-21,2119-2119[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AUUUUGUUUAUAUUUGAAUAA&UUAUUUAAAUAUAAACAAAAC	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN12913_c0_g1_2130_TPlot.pdf
TRINITY_DN12913_c0_g1:2132	si_s489	TRINITY_DN12913_c0_g1	2121	2141	2132	-17.90	-17.40	0.972067039106145	4	3-21,2139-2121	1-2,2141-2140[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUUGUUUAUAUUUGAAUAAUA&AUUUAUUUAAAUAUAAACAAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN12913_c0_g1_2132_TPlot.pdf
TRINITY_DN12915_c0_g1:628	si_a71	TRINITY_DN12915_c0_g1	617	637	628	-23.30	-15.60	0.669527896995708	3.5	2-16,636-622;19-21,619-617	1-1,637-637[UP5];17-18,621-620[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	UAAGAAAGAACAAUUUGAAAU&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999894778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN12915_c0_g1_628_TPlot.pdf
TRINITY_DN12926_c0_g2:140	si_s436	TRINITY_DN12926_c0_g2	129	149	140	-19.60	-14.90	0.760204081632653	8.5	2-5,148-145;8-20,142-130	1-1,149-149[UP5];6-7,144-143[SIL];21-21,129-129[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AAUAUGUGGUAUGUUUUUGUA&AAUAAUUACAUAUUAUAUAUA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN12926_c0_g2_140_TPlot.pdf
TRINITY_DN12926_c0_g2:77	si_a396	TRINITY_DN12926_c0_g2	66	86	77	-24.70	-16.80	0.680161943319838	10	5-21,82-66	1-4,86-83[UP5]	(((((((((((((((((....&....)))))))))))))))))	AACGAAGCAAUUUUGUAAUAA&AGAAUAUAGAAUUGUUUUGUU	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN12926_c0_g2_77_TPlot.pdf
TRINITY_DN1292_c0_g1:1203	si_s798	TRINITY_DN1292_c0_g1	1192	1212	1203	-29.30	-21.40	0.73037542662116	7	1-10,1212-1203;12-20,1201-1193	11-11,1202-1202[SIL];21-21,1192-1192[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AUAGCGAGGAAAAGAUAUGGG&CUCGUAUUUUAUCUUCGUUAC	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN1292_c0_g1_1203_TPlot.pdf
TRINITY_DN1292_c0_g1:1204	si_s797	TRINITY_DN1292_c0_g1	1193	1213	1204	-30.00	-21.40	0.713333333333333	7	2-11,1212-1203;13-21,1201-1193	1-1,1213-1213[UP5];12-12,1202-1202[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	UAGCGAGGAAAAGAUAUGGGG&GCUCGUAUUUUAUCUUCGUUA	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN1292_c0_g1_1204_TPlot.pdf
TRINITY_DN1292_c0_g1:1205	si_s796	TRINITY_DN1292_c0_g1	1194	1214	1205	-30.30	-20.00	0.66006600660066	8	3-12,1212-1203;14-21,1201-1194	1-2,1214-1213[UP5];13-13,1202-1202[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGCGAGGAAAAGAUAUGGGGA&AGCUCGUAUUUUAUCUUCGUU	2	0.99986176428727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN1292_c0_g1_1205_TPlot.pdf
TRINITY_DN1292_c0_g1:2142	si_a439	TRINITY_DN1292_c0_g1	2132	2151	2142	-32.40	-22.30	0.688271604938272	5	1-15,2151-2137;17-20,2136-2133	16-16,x-x[BULq];21-21,2132-2132[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	AAAUU-UCUUAUGUCCAAUGG&CCGUUGGAUAUGAGAUAAUUG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a439_TRINITY_DN1292_c0_g1_2142_TPlot.pdf
TRINITY_DN1292_c0_g1:2403	si_s75	TRINITY_DN1292_c0_g1	2389	2412	2403	-24.00	-16.80	0.7	10	3-17,2410-2396;18-21,2392-2389	1-2,2412-2411[UP5];x-x,2395-2393[BULt]	((((...(((((((((((((((..&..)))))))))))))))---))))	AGAGUACGGGAAAGAAAGGGAAAC&UAUUUUUUUUCUUUCCU---UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1292_c0_g1_2403_TPlot.pdf
TRINITY_DN1292_c0_g1:2734	si_a194	TRINITY_DN1292_c0_g1	2723	2743	2734	-29.40	-20.00	0.680272108843537	12	3-14,2741-2730	1-2,2743-2742[UP5];15-21,2729-2723[UP3]	.......((((((((((((..&..)))))))))))).......	AGGAGGAAGUGAACGGGGGUA&UUUCCCUGUUCACUAAUAAAU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN1292_c0_g1_2734_TPlot.pdf
TRINITY_DN1292_c0_g1:2738	si_a190	TRINITY_DN1292_c0_g1	2727	2750	2738	-32.00	-21.10	0.659375	15	3-6,2748-2745;7-18,2741-2730	1-2,2750-2749[UP5];x-x,2744-2742[BULt];19-21,2729-2727[UP3]	...((((((((((((...((((..&..))))---))))))))))))...	GGAAGUGAACGGGGGUAAAGGAAA&UAUCUU---UCCCUGUUCACUAAU	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN1292_c0_g1_2738_TPlot.pdf
TRINITY_DN1292_c0_g1:2739	si_a189	TRINITY_DN1292_c0_g1	2728	2751	2739	-32.10	-21.10	0.657320872274143	16	4-7,2748-2745;8-19,2741-2730	1-3,2751-2749[UP5];x-x,2744-2742[BULt];20-21,2729-2728[UP3]	..((((((((((((...((((...&...))))---))))))))))))..	GAAGUGAACGGGGGUAAAGGAAAA&AUAUCUU---UCCCUGUUCACUAA	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN1292_c0_g1_2739_TPlot.pdf
TRINITY_DN1292_c0_g1:2740	si_a188	TRINITY_DN1292_c0_g1	2729	2752	2740	-32.00	-21.10	0.659375	16.5	5-8,2748-2745;9-20,2741-2730	1-4,2752-2749[UP5];x-x,2744-2742[BULt];21-21,2729-2729[UP3]	.((((((((((((...((((....&....))))---)))))))))))).	AAGUGAACGGGGGUAAAGGAAAAU&AAUAUCUU---UCCCUGUUCACUA	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN1292_c0_g1_2740_TPlot.pdf
TRINITY_DN1292_c0_g1:2741	si_a187	TRINITY_DN1292_c0_g1	2730	2753	2741	-32.00	-20.80	0.65	17.5	6-9,2748-2745;10-21,2741-2730	1-5,2753-2749[UP5];x-x,2744-2742[BULt]	((((((((((((...((((.....&.....))))---))))))))))))	AGUGAACGGGGGUAAAGGAAAAUU&UAAUAUCUU---UCCCUGUUCACU	3	0.999816563307628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN1292_c0_g1_2741_TPlot.pdf
TRINITY_DN1292_c0_g1:4499	si_s64	TRINITY_DN1292_c0_g1	4488	4508	4499	-24.10	-15.90	0.659751037344398	12	4-9,4505-4500;11-19,4498-4490	1-3,4508-4506[UP5];10-10,4499-4499[SIL];20-21,4489-4488[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	GCAAGAGAUGGCGGUUGCAAU&UUAGCAACUUCUAUUUUUUUU	4	0.999999999996209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1292_c0_g1_4499_TPlot.pdf
TRINITY_DN1292_c0_g1:533	si_s352	TRINITY_DN1292_c0_g1	521	542	533	-27.20	-17.80	0.654411764705882	6	1-15,542-528;17-19,525-523	16-16,527-526[AILt];20-21,522-521[UP3]	..(((..(((((((((((((((&)))))))))))))))-.)))..	AACAAAACUGUUUCUUUGUCUU&GAGAUAAAGAAAUAG-AUUGAA	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN1292_c0_g1_533_TPlot.pdf
TRINITY_DN1292_c0_g1:69	si_a472	TRINITY_DN1292_c0_g1	58	78	69	-21.50	-14.00	0.651162790697674	10	4-18,75-61	1-3,78-76[UP5];19-21,60-58[UP3]	...(((((((((((((((...&...)))))))))))))))...	AACGUAACGAUAAUUAUAGAA&AUAUGUAAUUAUUGUUAUAUA	3	0.999999968333721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1292_c0_g1_69_TPlot.pdf
TRINITY_DN1292_c0_g1:70	si_a471	TRINITY_DN1292_c0_g1	59	79	70	-21.10	-14.00	0.663507109004739	11	5-19,75-61	1-4,79-76[UP5];20-21,60-59[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGUAACGAUAAUUAUAGAAA&AAUAUGUAAUUAUUGUUAUAU	2	0.999911685974573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN1292_c0_g1_70_TPlot.pdf
TRINITY_DN1292_c0_g1:71	si_a470	TRINITY_DN1292_c0_g1	60	80	71	-21.30	-14.00	0.657276995305164	12	6-20,75-61	1-5,80-76[UP5];21-21,60-60[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGUAACGAUAAUUAUAGAAAA&UAAUAUGUAAUUAUUGUUAUA	2	0.999833390537834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN1292_c0_g1_71_TPlot.pdf
TRINITY_DN1292_c0_g1:72	si_a469	TRINITY_DN1292_c0_g1	61	81	72	-21.10	-13.80	0.654028436018957	13	7-21,75-61	1-6,81-76[UP5]	(((((((((((((((......&......)))))))))))))))	GUAACGAUAAUUAUAGAAAAU&AUAAUAUGUAAUUAUUGUUAU	4	0.999999594442019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN1292_c0_g1_72_TPlot.pdf
TRINITY_DN1292_c5_g1:166	si_a663	TRINITY_DN1292_c5_g1	154	176	166	-31.40	-21.10	0.671974522292994	10	1-4,176-173;5-10,171-166;11-18,164-157	x-x,172-172[BULt];x-x,165-165[BULt];19-21,156-154[UP3]	...((((((((.((((((.((((&))))-))))))-))))))))...	CACGGGGUCAGCUGGGCAGUUUC&GAAA-UGCCUA-UUGAUUCCUUA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN1292_c5_g1_166_TPlot.pdf
TRINITY_DN1292_c5_g1:167	si_a662	TRINITY_DN1292_c5_g1	155	177	167	-33.40	-22.20	0.664670658682635	9.5	1-5,177-173;6-11,171-166;12-19,164-157	x-x,172-172[BULt];x-x,165-165[BULt];20-21,156-155[UP3]	..((((((((.((((((.(((((&)))))-))))))-))))))))..	ACGGGGUCAGCUGGGCAGUUUCU&GGAAA-UGCCUA-UUGAUUCCUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a662_TRINITY_DN1292_c5_g1_167_TPlot.pdf
TRINITY_DN1292_c5_g1:168	si_a661	TRINITY_DN1292_c5_g1	156	178	168	-35.80	-24.70	0.689944134078212	8.5	1-6,178-173;7-12,171-166;13-20,164-157	x-x,172-172[BULt];x-x,165-165[BULt];21-21,156-156[UP3]	.((((((((.((((((.((((((&))))))-))))))-)))))))).	CGGGGUCAGCUGGGCAGUUUCUC&GGGAAA-UGCCUA-UUGAUUCCU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a661_TRINITY_DN1292_c5_g1_168_TPlot.pdf
TRINITY_DN1292_c5_g1:169	si_a660	TRINITY_DN1292_c5_g1	157	179	169	-36.60	-24.80	0.677595628415301	7.5	2-7,178-173;8-13,171-166;14-21,164-157	1-1,179-179[UP5];x-x,172-172[BULt];x-x,165-165[BULt]	((((((((.((((((.((((((.&.))))))-))))))-))))))))	GGGGUCAGCUGGGCAGUUUCUCU&CGGGAAA-UGCCUA-UUGAUUCC	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN1292_c5_g1_169_TPlot.pdf
TRINITY_DN1292_c8_g1:63	si_s681	TRINITY_DN1292_c8_g1	52	72	63	-25.10	-17.00	0.677290836653386	9.5	1-3,72-70;5-10,68-63;12-19,61-54	4-4,69-69[SIL];11-11,62-62[SIL];20-21,53-52[UP3]	..((((((((.((((((.(((&))).)))))).))))))))..	GUGUUGAGCUGGUGUUUGUGU&AUAGAAACAUGAGUUUAAUUA	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN1292_c8_g1_63_TPlot.pdf
TRINITY_DN1292_c8_g1:64	si_s680	TRINITY_DN1292_c8_g1	53	73	64	-25.10	-17.00	0.677290836653386	9.5	2-4,72-70;6-11,68-63;13-20,61-54	1-1,73-73[UP5];5-5,69-69[SIL];12-12,62-62[SIL];21-21,53-53[UP3]	.((((((((.((((((.(((.&.))).)))))).)))))))).	UGUUGAGCUGGUGUUUGUGUU&UAUAGAAACAUGAGUUUAAUU	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN1292_c8_g1_64_TPlot.pdf
TRINITY_DN1292_c8_g1:65	si_s679	TRINITY_DN1292_c8_g1	54	74	65	-25.20	-17.00	0.674603174603175	9.5	3-5,72-70;7-12,68-63;14-21,61-54	1-2,74-73[UP5];6-6,69-69[SIL];13-13,62-62[SIL]	((((((((.((((((.(((..&..))).)))))).))))))))	GUUGAGCUGGUGUUUGUGUUG&UUAUAGAAACAUGAGUUUAAU	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN1292_c8_g1_65_TPlot.pdf
TRINITY_DN12933_c0_g1:1059	si_s79	TRINITY_DN12933_c0_g1	1048	1068	1059	-26.20	-18.20	0.694656488549618	7.5	3-6,1066-1063;8-21,1061-1048	1-2,1068-1067[UP5];7-7,1062-1062[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AAGAGGAAAGGGAGUAAAAUU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12933_c0_g1_1059_TPlot.pdf
TRINITY_DN12933_c0_g1:1060	si_s78	TRINITY_DN12933_c0_g1	1049	1069	1060	-26.20	-17.40	0.66412213740458	9.5	4-7,1066-1063;9-21,1061-1049	1-3,1069-1067[UP5];8-8,1062-1062[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AGAGGAAAGGGAGUAAAAUUG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12933_c0_g1_1060_TPlot.pdf
TRINITY_DN12935_c0_g1:2387	si_a541	TRINITY_DN12935_c0_g1	2375	2396	2387	-32.20	-21.80	0.677018633540373	9	2-11,2395-2386;13-18,2383-2378	1-1,2396-2396[UP5];12-12,2385-2384[AILt];19-21,2377-2375[UP3]	...((((((..((((((((((.&.))))))))))-.))))))...	ACCGGUAGAGCUGAACCGAUCA&CGAUCGGUUCA-AUCUAUUUCU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a541_TRINITY_DN12935_c0_g1_2387_TPlot.pdf
TRINITY_DN12935_c0_g1:2752	si_s73	TRINITY_DN12935_c0_g1	2737	2761	2752	-24.00	-17.20	0.716666666666667	7	1-13,2761-2749;14-20,2744-2738	x-x,2748-2745[BULt];21-21,2737-2737[UP3]	.(((((((....(((((((((((((&)))))))))))))----))))))).	UGAGGAAAACGCGAAAAAAAAUGGG&UCUAUUUUUUUUC----UUUCCUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12935_c0_g1_2752_TPlot.pdf
TRINITY_DN12935_c0_g1:2753	si_s72	TRINITY_DN12935_c0_g1	2738	2762	2753	-24.10	-17.70	0.734439834024896	7	1-14,2762-2749;15-21,2744-2738	x-x,2748-2745[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	GAGGAAAACGCGAAAAAAAAUGGGG&UUCUAUUUUUUUUC----UUUCCUU	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN12935_c0_g1_2753_TPlot.pdf
TRINITY_DN12935_c0_g1:2756	si_s69	TRINITY_DN12935_c0_g1	2745	2765	2756	-23.40	-17.70	0.756410256410256	7	1-17,2765-2749	18-21,2748-2745[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACGCGAAAAAAAAUGGGGGUU&AACUUCUAUUUUUUUUCUUUC	4	0.999999656177692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN12935_c0_g1_2756_TPlot.pdf
TRINITY_DN12935_c0_g1:2757	si_s68	TRINITY_DN12935_c0_g1	2746	2766	2757	-23.10	-17.70	0.766233766233766	7	2-18,2765-2749	1-1,2766-2766[UP5];19-21,2748-2746[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CGCGAAAAAAAAUGGGGGUUA&CAACUUCUAUUUUUUUUCUUU	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN12935_c0_g1_2757_TPlot.pdf
TRINITY_DN12935_c0_g1:2758	si_s67	TRINITY_DN12935_c0_g1	2747	2767	2758	-25.60	-17.70	0.69140625	8	3-19,2765-2749	1-2,2767-2766[UP5];20-21,2748-2747[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCGAAAAAAAAUGGGGGUUAC&GCAACUUCUAUUUUUUUUCUU	3	0.999999811949203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN12935_c0_g1_2758_TPlot.pdf
TRINITY_DN12935_c0_g1:2759	si_s66	TRINITY_DN12935_c0_g1	2748	2773	2759	-26.30	-18.70	0.711026615969582	14	1-3,2773-2771;4-20,2765-2749	x-x,2770-2766[BULt];21-21,2748-2748[UP3]	.(((((((((((((((((.....(((&)))-----))))))))))))))))).	CGAAAAAAAAUGGGGGUUACACGGCU&AGC-----AACUUCUAUUUUUUUUCU	3	0.997062604531715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN12935_c0_g1_2759_TPlot.pdf
TRINITY_DN12935_c0_g1:2989	si_a454	TRINITY_DN12935_c0_g1	2978	2998	2989	-21.30	-14.40	0.676056338028169	14	5-17,2994-2982	1-4,2998-2995[UP5];18-21,2981-2978[UP3]	....(((((((((((((....&....)))))))))))))....	AAAGAUGUGUAGCAGCAUAAU&UAAUUGUUGUUAUAUAUAAUA	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN12935_c0_g1_2989_TPlot.pdf
TRINITY_DN12935_c0_g1:2990	si_a453	TRINITY_DN12935_c0_g1	2979	2999	2990	-21.10	-14.40	0.682464454976303	15	6-18,2994-2982	1-5,2999-2995[UP5];19-21,2981-2979[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAGAUGUGUAGCAGCAUAAUU&AUAAUUGUUGUUAUAUAUAAU	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN12935_c0_g1_2990_TPlot.pdf
TRINITY_DN1293_c0_g2:1462	si_s77	TRINITY_DN1293_c0_g2	1453	1471	1462	-25.50	-17.50	0.686274509803922	9.5	3-10,1469-1462;13-21,1461-1453	1-2,1471-1470[UP5];11-12,x-x[BULq]	(((((((((--((((((((..&..))))))))..)))))))))	GGAGAAAGG--GGAAAAGACG&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1293_c0_g2_1462_TPlot.pdf
TRINITY_DN1293_c0_g2:1540	si_s485	TRINITY_DN1293_c0_g2	1529	1549	1540	-18.10	-12.50	0.69060773480663	7	1-12,1549-1538;15-19,1535-1531	13-14,1537-1536[SIL];20-21,1530-1529[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	GGUAUAUGCAAGUAGGUAUAG&CUAUAUUUAUUUAAAUAUAAA	2	0.989356908938648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1293_c0_g2_1540_TPlot.pdf
TRINITY_DN1293_c0_g2:1627	si_a768	TRINITY_DN1293_c0_g2	1615	1636	1627	-28.40	-20.00	0.704225352112676	5.5	1-16,1636-1621;19-21,1617-1615	17-18,1620-1618[AILt]	(((...((((((((((((((((&))))))))))))))))-..)))	AGAACGUGGAUCGAUCAAGAAC&GUUUUUGAUUGAUUCA-ACUCU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN1293_c0_g2_1627_TPlot.pdf
TRINITY_DN1293_c0_g2:1628	si_a767	TRINITY_DN1293_c0_g2	1617	1637	1628	-30.10	-21.20	0.704318936877076	7	1-17,1637-1621	18-21,1620-1617[UP3]	....(((((((((((((((((&)))))))))))))))))....	AACGUGGAUCGAUCAAGAACU&GGUUUUUGAUUGAUUCAACUC	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN1293_c0_g2_1628_TPlot.pdf
TRINITY_DN1293_c0_g2:1631	si_a764	TRINITY_DN1293_c0_g2	1620	1640	1631	-28.90	-21.50	0.743944636678201	9	4-20,1637-1621	1-3,1640-1638[UP5];21-21,1620-1620[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GUGGAUCGAUCAAGAACUAGU&UUGGGUUUUUGAUUGAUUCAA	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1293_c0_g2_1631_TPlot.pdf
TRINITY_DN1293_c0_g2:1632	si_a763	TRINITY_DN1293_c0_g2	1621	1641	1632	-28.80	-21.30	0.739583333333333	10	5-21,1637-1621	1-4,1641-1638[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGGAUCGAUCAAGAACUAGUA&UUUGGGUUUUUGAUUGAUUCA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1293_c0_g2_1632_TPlot.pdf
TRINITY_DN1293_c0_g2:1633	si_a762	TRINITY_DN1293_c0_g2	1622	1643	1633	-29.70	-20.20	0.68013468013468	9	1-3,1643-1641;6-21,1637-1622	4-5,1640-1638[AILt]	((((((((((((((((...(((&)))-..))))))))))))))))	GGAUCGAUCAAGAACUAGUAAG&CUU-UGGGUUUUUGAUUGAUUC	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1293_c0_g2_1633_TPlot.pdf
TRINITY_DN12942_c0_g3:134	si_a407	TRINITY_DN12942_c0_g3	123	143	134	-19.80	-15.90	0.803030303030303	7.5	3-5,141-139;7-21,137-123	1-2,143-142[UP5];6-6,138-138[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AUUUAGAUAUAAGCACGACUU&UUGUUUUGUUUAUAUUUAAAU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN12942_c0_g3_134_TPlot.pdf
TRINITY_DN12960_c0_g2:159	si_s92	TRINITY_DN12960_c0_g2	141	168	159	-34.90	-24.70	0.707736389684814	11	1-12,168-157;13-17,152-148;18-21,144-141	x-x,156-153[BULt];x-x,147-145[BULt]	((((...(((((....((((((((((((&))))))))))))----)))))---))))	AUCCAAAGAAGCCACAGAAGAAGAAGAA&UUCUUCUUCUUC----GCUUC---GGAU	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN12960_c0_g2_159_TPlot.pdf
TRINITY_DN12960_c0_g2:168	si_s83	TRINITY_DN12960_c0_g2	157	178	168	-30.90	-20.50	0.663430420711974	7	1-6,178-173;9-21,169-157	7-8,172-170[AILt]	(((((((((((((...((((((&))))))-..)))))))))))))	GAAGAAGAAGAAGCUCAAAGAA&UUCUUU-CCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN12960_c0_g2_168_TPlot.pdf
TRINITY_DN12960_c0_g2:2717	si_s100	TRINITY_DN12960_c0_g2	2706	2725	2717	-33.70	-23.00	0.682492581602374	8.5	1-7,2725-2719;9-15,2718-2712	8-8,x-x[BULq];16-21,2711-2706[UP3]	......(((((((-(((((((&))))))).)))))))......	CAUGCACAGUCCG-AGCGAAG&CUUCGCUUCGGAUUGGAAAAU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN12960_c0_g2_2717_TPlot.pdf
TRINITY_DN12960_c0_g2:2718	si_s99	TRINITY_DN12960_c0_g2	2707	2726	2718	-34.60	-23.10	0.667630057803468	8.5	2-8,2725-2719;10-16,2718-2712	1-1,2726-2726[UP5];9-9,x-x[BULq];17-21,2711-2707[UP3]	.....(((((((-(((((((.&.))))))).))))))).....	AUGCACAGUCCG-AGCGAAGG&UCUUCGCUUCGGAUUGGAAAA	2	0.982270976238932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN12960_c0_g2_2718_TPlot.pdf
TRINITY_DN12960_c0_g2:2719	si_s98	TRINITY_DN12960_c0_g2	2708	2727	2719	-34.70	-24.50	0.706051873198847	7.5	1-9,2727-2719;11-17,2718-2712	10-10,x-x[BULq];18-21,2711-2708[UP3]	....(((((((-(((((((((&))))))))).)))))))....	UGCACAGUCCG-AGCGAAGGA&UUCUUCGCUUCGGAUUGGAAA	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN12960_c0_g2_2719_TPlot.pdf
TRINITY_DN12960_c0_g2:2720	si_s96	TRINITY_DN12960_c0_g2	2710	2729	2720	-37.20	-24.70	0.663978494623656	8.5	3-11,2727-2719;13-19,2718-2712	1-2,2729-2728[UP5];12-12,x-x[BULq];20-21,2711-2710[UP3]	..(((((((-(((((((((..&..))))))))).)))))))..	CACAGUCCG-AGCGAAGGAUU&UCUUCUUCGCUUCGGAUUGGA	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN12960_c0_g2_2720_TPlot.pdf
TRINITY_DN12960_c0_g2:2936	si_a350	TRINITY_DN12960_c0_g2	2925	2945	2936	-20.30	-13.40	0.660098522167488	13	5-8,2941-2938;11-21,2935-2925	1-4,2945-2942[UP5];9-10,2937-2936[SIL]	(((((((((((..((((....&....))))..)))))))))))	UCAAAAUAGAAGAGGUAGUAA&AAAAUAUUAAUUCUAUUUUGA	3	0.999990257383135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN12960_c0_g2_2936_TPlot.pdf
TRINITY_DN12960_c0_g2:863	si_a627	TRINITY_DN12960_c0_g2	852	876	863	-29.50	-19.70	0.667796610169492	17	1-3,876-874;4-15,869-858	x-x,873-870[BULt];16-21,857-852[UP3]	......((((((((((((....(((&)))----))))))))))))......	AUUGGUUCGACAUGGUGCCAAUGCC&GGC----GUAUUAUGUCGAUUUUUU	4	0.999988269255955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN12960_c0_g2_863_TPlot.pdf
TRINITY_DN12962_c0_g1:71	si_s422	TRINITY_DN12962_c0_g1	60	82	71	-21.30	-15.30	0.71830985915493	8	1-7,82-76;9-21,72-60	8-8,75-73[AILt]	(((((((((((((...(((((((&)))))))--.)))))))))))))	AAUUAUUGUUGUAAAAAGGAUAU&AUAUUCU--AUAUAACAAUAAUU	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN12962_c0_g1_71_TPlot.pdf
TRINITY_DN1296_c0_g1:1004	si_s91	TRINITY_DN1296_c0_g1	993	1013	1004	-34.70	-24.30	0.70028818443804	6.5	1-17,1013-997	18-21,996-993[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUUAAGGCGAAGGAGAAGGAA&UUUCUUCUUCUUCGCUUCGGA	4	0.999998571403533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN1296_c0_g1_1004_TPlot.pdf
TRINITY_DN1296_c0_g1:1006	si_s89	TRINITY_DN1296_c0_g1	995	1015	1006	-35.30	-24.50	0.694050991501416	7.5	3-19,1013-997	1-2,1015-1014[UP5];20-21,996-995[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAAGGCGAAGGAGAAGGAAAA&CCUUUCUUCUUCUUCGCUUCG	4	0.99999997448701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1296_c0_g1_1006_TPlot.pdf
TRINITY_DN1296_c0_g1:1007	si_s88	TRINITY_DN1296_c0_g1	996	1016	1007	-34.80	-24.50	0.704022988505747	8.5	4-20,1013-997	1-3,1016-1014[UP5];21-21,996-996[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAGGCGAAGGAGAAGGAAAAC&UCCUUUCUUCUUCUUCGCUUC	3	0.999999879536454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1296_c0_g1_1007_TPlot.pdf
TRINITY_DN1296_c0_g1:1009	si_s86	TRINITY_DN1296_c0_g1	998	1018	1009	-32.90	-23.70	0.720364741641337	11	6-21,1013-998	1-5,1018-1014[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGCGAAGGAGAAGGAAAACGA&UUUCCUUUCUUCUUCUUCGCU	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1296_c0_g1_1009_TPlot.pdf
TRINITY_DN1296_c0_g1:1014	si_s807	TRINITY_DN1296_c0_g1	1002	1023	1014	-28.90	-18.90	0.653979238754325	8	1-4,1023-1020;6-10,1018-1014;12-20,1011-1003	5-5,1019-1019[SIL];11-11,1013-1012[AILt];21-21,1002-1002[UP3]	.(((((((((..(((((.((((&)))).)))))-.))))))))).	AAGGAGAAGGAAAACGAUGAUA&UAUCUUCGUU-ACCUUUUCUUA	2	0.999999972584635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1296_c0_g1_1014_TPlot.pdf
TRINITY_DN1296_c0_g1:1015	si_s806	TRINITY_DN1296_c0_g1	1003	1024	1015	-28.60	-19.30	0.674825174825175	7	1-5,1024-1020;7-11,1018-1014;13-21,1011-1003	6-6,1019-1019[SIL];12-12,1013-1012[AILt]	(((((((((..(((((.(((((&))))).)))))-.)))))))))	AGGAGAAGGAAAACGAUGAUAA&UUAUCUUCGUU-ACCUUUUCUU	4	0.999999999080782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1296_c0_g1_1015_TPlot.pdf
TRINITY_DN1296_c0_g1:1016	si_s805	TRINITY_DN1296_c0_g1	1004	1025	1016	-28.60	-18.70	0.653846153846154	7	2-6,1024-1020;8-12,1018-1014;14-21,1011-1004	1-1,1025-1025[UP5];7-7,1019-1019[SIL];13-13,1013-1012[AILt]	((((((((..(((((.(((((.&.))))).)))))-.))))))))	GGAGAAGGAAAACGAUGAUAAU&UUUAUCUUCGUU-ACCUUUUCU	3	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1296_c0_g1_1016_TPlot.pdf
TRINITY_DN12977_c0_g1:1084	si_s8	TRINITY_DN12977_c0_g1	1068	1093	1084	-21.30	-14.62	0.686384976525822	13.5	1-11,1093-1083;13-21,1076-1068	12-12,1082-1077[AILt]	(((((((((......(((((((((((&)))))))))))-----.)))))))))	AGUAUAGUAUUCUUCUAAUGAGUAAU&AUUACUUAUUA-----UUACUAUAUU	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN12977_c0_g1_1084_TPlot.pdf
TRINITY_DN12977_c0_g1:54	si_s74	TRINITY_DN12977_c0_g1	43	63	54	-25.00	-17.30	0.692	10	1-13,63-51;15-17,49-47	14-14,50-50[SIL];18-21,46-43[UP3]	....(((.(((((((((((((&))))))))))))).)))....	AAAUGGAUAGAGAGGAGAUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN12977_c0_g1_54_TPlot.pdf
TRINITY_DN12977_c0_g1:55	si_s73	TRINITY_DN12977_c0_g1	44	64	55	-24.00	-18.90	0.7875	9	1-14,64-51;16-18,49-47	15-15,50-50[SIL];19-21,46-44[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	AAUGGAUAGAGAGGAGAUGGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN12977_c0_g1_55_TPlot.pdf
TRINITY_DN12977_c0_g1:57	si_s71	TRINITY_DN12977_c0_g1	46	66	57	-25.70	-20.00	0.778210116731518	7.5	2-16,65-51;18-20,49-47	1-1,66-66[UP5];17-17,50-50[SIL];21-21,46-46[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UGGAUAGAGAGGAGAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN12977_c0_g1_57_TPlot.pdf
TRINITY_DN12979_c0_g1:1059	si_a327	TRINITY_DN12979_c0_g1	1044	1068	1059	-28.40	-19.50	0.686619718309859	11.5	3-13,1066-1056;14-21,1051-1044	1-2,1068-1067[UP5];x-x,1055-1052[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	GGACAAGGCAUUGAUGGAGAAGUAG&UGAUUUUUUUAUU----CCUUGUCC	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN12979_c0_g1_1059_TPlot.pdf
TRINITY_DN12979_c0_g1:1459	si_s65	TRINITY_DN12979_c0_g1	1448	1468	1459	-26.00	-17.60	0.676923076923077	6	1-6,1468-1463;8-20,1461-1449	7-7,1462-1462[SIL];21-21,1448-1448[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UAGAAGAAAUGGGAAUUGCUA&UAGCAACUUCUAUUUUUUUUC	2	0.999138612751087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN12979_c0_g1_1459_TPlot.pdf
TRINITY_DN12979_c0_g1:1460	si_s64	TRINITY_DN12979_c0_g1	1449	1469	1460	-24.10	-18.50	0.767634854771784	5	1-7,1469-1463;9-21,1461-1449	8-8,1462-1462[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	AGAAGAAAUGGGAAUUGCUAA&UUAGCAACUUCUAUUUUUUUU	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN12979_c0_g1_1460_TPlot.pdf
TRINITY_DN12979_c0_g1:1461	si_s63	TRINITY_DN12979_c0_g1	1450	1470	1461	-25.80	-17.90	0.693798449612403	5.5	2-8,1469-1463;10-21,1461-1450	1-1,1470-1470[UP5];9-9,1462-1462[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	GAAGAAAUGGGAAUUGCUAAA&GUUAGCAACUUCUAUUUUUUU	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN12979_c0_g1_1461_TPlot.pdf
TRINITY_DN12979_c0_g1:1482	si_s79	TRINITY_DN12979_c0_g1	1469	1491	1482	-26.20	-18.10	0.690839694656489	12	6-17,1486-1475;18-21,1472-1469	1-5,1491-1487[UP5];x-x,1474-1473[BULt]	((((..((((((((((((.....&.....))))))))))))--))))	AAGAUCAGAAAGGAAGGAUACCA&UUUUUUCUUUCCUUUCU--UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN12979_c0_g1_1482_TPlot.pdf
TRINITY_DN12979_c0_g1:1483	si_s78	TRINITY_DN12979_c0_g1	1470	1492	1483	-26.20	-17.20	0.656488549618321	14	7-18,1486-1475;19-21,1472-1470	1-6,1492-1487[UP5];x-x,1474-1473[BULt]	(((..((((((((((((......&......))))))))))))--)))	AGAUCAGAAAGGAAGGAUACCAG&UUUUUUUCUUUCCUUUCU--UCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN12979_c0_g1_1483_TPlot.pdf
TRINITY_DN12979_c0_g1:1485	si_s76	TRINITY_DN12979_c0_g1	1474	1494	1485	-23.60	-16.40	0.694915254237288	17	9-20,1486-1475	1-8,1494-1487[UP5];21-21,1474-1474[UP3]	.((((((((((((........&........)))))))))))).	CAGAAAGGAAGGAUACCAGUA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN12979_c0_g1_1485_TPlot.pdf
TRINITY_DN12979_c0_g1:1486	si_s75	TRINITY_DN12979_c0_g1	1475	1495	1486	-24.00	-16.40	0.683333333333333	18	10-21,1486-1475	1-9,1495-1487[UP5]	((((((((((((.........&.........))))))))))))	AGAAAGGAAGGAUACCAGUAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN12979_c0_g1_1486_TPlot.pdf
TRINITY_DN12979_c0_g1:525	si_a753	TRINITY_DN12979_c0_g1	510	534	525	-33.10	-22.00	0.664652567975831	11.5	1-3,534-532;5-11,530-524;12-21,519-510	4-4,531-531[SIL];x-x,523-520[BULt]	((((((((((....(((((((.(((&))).)))))))----))))))))))	AAAAAUCCAACAUUGGGAGGUACAU&AUGAACCUCCU----UUGGGUUUUU	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN12979_c0_g1_525_TPlot.pdf
TRINITY_DN12979_c0_g1:526	si_a752	TRINITY_DN12979_c0_g1	511	535	526	-34.80	-23.60	0.67816091954023	11.5	1-4,535-532;6-12,530-524;13-21,519-511	5-5,531-531[SIL];x-x,523-520[BULt]	(((((((((....(((((((.((((&)))).)))))))----)))))))))	AAAAUCCAACAUUGGGAGGUACAUG&CAUGAACCUCCU----UUGGGUUUU	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN12979_c0_g1_526_TPlot.pdf
TRINITY_DN12981_c0_g1:313	si_s62	TRINITY_DN12981_c0_g1	302	322	313	-26.50	-17.50	0.660377358490566	7	2-11,321-312;13-18,310-305	1-1,322-322[UP5];12-12,311-311[SIL];19-21,304-302[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	AGCAAAUAGCAGUUGCUAAUG&AGUUAGCAACUUCUAUUUUUU	2	0.999105841890088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN12981_c0_g1_313_TPlot.pdf
TRINITY_DN12984_c0_g1:1717	si_s437	TRINITY_DN12984_c0_g1	1706	1726	1717	-19.70	-14.00	0.710659898477157	5	1-4,1726-1723;6-18,1721-1709	5-5,1722-1722[SIL];19-21,1708-1706[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UUUUAUAUAAUAUGUACUUAU&AUAAUUACAUAUUAUAUAUAA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN12984_c0_g1_1717_TPlot.pdf
TRINITY_DN12986_c0_g1:492	si_a497	TRINITY_DN12986_c0_g1	481	502	492	-32.00	-24.10	0.753125	7.5	2-5,501-498;7-21,495-481	1-1,502-502[UP5];6-6,497-496[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	GAGGAAGACGAAAAGGUGAUAG&AUGUC-GUUUUUCGUCUUCCUU	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN12986_c0_g1_492_TPlot.pdf
TRINITY_DN12986_c0_g1:494	si_a495	TRINITY_DN12986_c0_g1	483	504	494	-31.90	-21.50	0.673981191222571	11	4-7,501-498;9-21,495-483	1-3,504-502[UP5];8-8,497-496[AILt]	(((((((((((((..((((...&...))))-.)))))))))))))	GGAAGACGAAAAGGUGAUAGAA&AUAUGUC-GUUUUUCGUCUUCC	4	0.999999958128544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN12986_c0_g1_494_TPlot.pdf
TRINITY_DN12986_c0_g1:573	si_a785	TRINITY_DN12986_c0_g1	562	588	573	-25.90	-17.06	0.658687258687259	19.5	1-7,588-582;9-21,574-562	8-8,581-575[AILt]	(((((((((((((.......(((((((&)))))))------.)))))))))))))	GAGGAUAGGGAAGCAAUGCAGGGAGAG&CUCUUCU------AUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN12986_c0_g1_573_TPlot.pdf
TRINITY_DN12987_c0_g2:1588	si_s22	TRINITY_DN12987_c0_g2	1576	1597	1588	-26.70	-19.50	0.730337078651685	5	2-13,1596-1585;14-21,1583-1576	1-1,1597-1597[UP5];x-x,1584-1584[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AUUUAGUUAGCAGUUAGUAUAU&CUAUAUUGAUUGC-AACUAAAU	0	0.0232396614716743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN12987_c0_g2_1588_TPlot.pdf
TRINITY_DN1298_c0_g1:183	si_s558	TRINITY_DN1298_c0_g1	166	192	183	-28.20	-18.40	0.652482269503546	17	1-11,192-182;12-15,176-173;16-19,171-168	x-x,181-177[BULt];x-x,172-172[BULt];20-21,167-166[UP3]	..((((.((((.....(((((((((((&)))))))))))-----))))-))))..	UGGUCCUCGAGAGGCUGAUGUUAGUUC&GAAUUAAUAUU-----UUCG-GGACAA	2	0.975189943484374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN1298_c0_g1_183_TPlot.pdf
TRINITY_DN1298_c0_g1:186	si_s555	TRINITY_DN1298_c0_g1	169	195	186	-26.90	-18.70	0.695167286245353	9	1-14,195-182;15-18,176-173;19-21,171-169	x-x,181-177[BULt];x-x,172-172[BULt]	(((.((((.....((((((((((((((&))))))))))))))-----))))-)))	UCCUCGAGAGGCUGAUGUUAGUUCUAU&AUAGAAUUAAUAUU-----UUCG-GGA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN1298_c0_g1_186_TPlot.pdf
TRINITY_DN1298_c0_g1:189	si_s552	TRINITY_DN1298_c0_g1	173	198	189	-21.10	-14.20	0.672985781990521	12.5	4-17,195-182;18-21,176-173	1-3,198-196[UP5];x-x,181-177[BULt]	((((.....((((((((((((((...&...))))))))))))))-----))))	CGAGAGGCUGAUGUUAGUUCUAUGUU&AAAAUAGAAUUAAUAUU-----UUCG	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN1298_c0_g1_189_TPlot.pdf
TRINITY_DN1298_c0_g1:211	si_a854	TRINITY_DN1298_c0_g1	199	220	211	-25.00	-18.00	0.72	9	4-16,217-205;17-20,203-200	1-3,220-218[UP5];x-x,204-204[BULt];21-21,199-199[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	GGAUACGUUGGGUUUCAAGAGC&UAACUUGAAAUCCAAU-UAUUA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN1298_c0_g1_211_TPlot.pdf
TRINITY_DN1298_c0_g1:2834	si_a71	TRINITY_DN1298_c0_g1	2823	2845	2834	-23.30	-15.20	0.652360515021459	10.5	1-7,2845-2839;8-14,2836-2830;16-20,2828-2824	x-x,2838-2837[BULt];15-15,2829-2829[SIL];21-21,2823-2823[UP3]	.(((((.(((((((..(((((((&)))))))--))))))).))))).	AAGUGAUAAGCAGUUCUUGGGAG&CUUUCAA--AUUGUUUUUCAUUA	4	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1298_c0_g1_2834_TPlot.pdf
TRINITY_DN1298_c0_g1:2835	si_a70	TRINITY_DN1298_c0_g1	2824	2846	2835	-23.90	-16.50	0.690376569037657	9	1-8,2846-2839;9-15,2836-2830;17-21,2828-2824	x-x,2838-2837[BULt];16-16,2829-2829[SIL]	(((((.(((((((..((((((((&))))))))--))))))).)))))	AGUGAUAAGCAGUUCUUGGGAGA&UCUUUCAA--AUUGUUUUUCAUU	2	0.999890876151333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1298_c0_g1_2835_TPlot.pdf
TRINITY_DN1298_c0_g1:2841	si_a66	TRINITY_DN1298_c0_g1	2828	2850	2841	-26.70	-18.20	0.681647940074906	11	2-12,2849-2839;13-19,2836-2830	1-1,2850-2850[UP5];x-x,2838-2837[BULt];20-21,2829-2828[UP3]	..(((((((..(((((((((((.&.)))))))))))--)))))))..	AUAAGCAGUUCUUGGGAGAGGCC&CGCUUCUUUCAA--AUUGUUUUU	4	0.999999997766903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1298_c0_g1_2841_TPlot.pdf
TRINITY_DN12991_c0_g2:360	si_a409	TRINITY_DN12991_c0_g2	349	369	360	-19.50	-13.70	0.702564102564103	11	1-15,369-355	16-21,354-349[UP3]	......(((((((((((((((&)))))))))))))))......	CCACGCAAAUAUGGACAGGGC&GUUUUGUUUAUAUUUAAAUAA	3	0.99999818466634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN12991_c0_g2_360_TPlot.pdf
TRINITY_DN12991_c0_g2:361	si_a408	TRINITY_DN12991_c0_g2	350	370	361	-20.10	-13.90	0.691542288557214	11	2-16,369-355	1-1,370-370[UP5];17-21,354-350[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CACGCAAAUAUGGACAGGGCU&UGUUUUGUUUAUAUUUAAAUA	3	0.999999723739162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN12991_c0_g2_361_TPlot.pdf
TRINITY_DN12991_c0_g2:363	si_a406	TRINITY_DN12991_c0_g2	352	372	363	-19.80	-13.90	0.702020202020202	13	4-18,369-355	1-3,372-370[UP5];19-21,354-352[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGCAAAUAUGGACAGGGCUCC&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999962514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN12991_c0_g2_363_TPlot.pdf
TRINITY_DN12991_c0_g2:472	si_a642	TRINITY_DN12991_c0_g2	461	481	472	-25.90	-17.28	0.667181467181467	7	2-11,480-471;15-21,467-461	1-1,481-481[UP5];12-14,470-468[SIL]	(((((((...((((((((((.&.))))))))))...)))))))	CCGAUAUUGGAUUCAAAAAGU&UUUUUUUGAGUAAUAUAUCGG	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN12991_c0_g2_472_TPlot.pdf
TRINITY_DN12994_c0_g1:709	si_s89	TRINITY_DN12994_c0_g1	696	718	709	-35.30	-24.40	0.691218130311615	5.5	2-15,717-704;16-18,701-699;20-21,697-696	1-1,718-718[UP5];x-x,703-702[BULt];19-19,698-698[SIL]	((.(((..((((((((((((((.&.))))))))))))))--))).))	CGCGGCAGGAAGAAGAAGGAAGA&CCUUUCUUCUUCUUC--GCUUCG	4	0.999999993331237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN12994_c0_g1_709_TPlot.pdf
TRINITY_DN12994_c0_g1:717	si_s81	TRINITY_DN12994_c0_g1	706	727	717	-28.90	-26.10	0.903114186851211	3.5	1-9,727-719;10-21,717-706	x-x,718-718[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	AGAAGAAGGAAGAGAAAGAAGA&UUUUCUUUC-CUUUCUUCUUCU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN12994_c0_g1_717_TPlot.pdf
TRINITY_DN12994_c0_g1:718	si_s77	TRINITY_DN12994_c0_g1	707	727	718	-25.50	-20.30	0.796078431372549	4.5	1-12,727-716;14-21,714-707	13-13,715-715[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAAGAAGGAAGAGAAAGAAGA&UUUUUUUUCUUUCCUUUCUUC	4	0.999997655413421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN12994_c0_g1_718_TPlot.pdf
TRINITY_DN12995_c0_g1:174	si_a298	TRINITY_DN12995_c0_g1	163	183	174	-28.10	-19.68	0.700355871886121	7.5	1-8,183-176;12-21,172-163	9-11,175-173[SIL]	((((((((((...((((((((&))))))))...))))))))))	UCCAAGCGGGGCGUUUUUAAA&UUUAAAAAAGAUUCGCUUGGA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN12995_c0_g1_174_TPlot.pdf
TRINITY_DN1299_c0_g1:2578	si_s495	TRINITY_DN1299_c0_g1	2567	2587	2578	-19.80	-14.30	0.722222222222222	5	2-14,2586-2574;17-19,2571-2569	1-1,2587-2587[UP5];15-16,2573-2572[SIL];20-21,2568-2567[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	AUUUGGAUUGUUUAUAUUUAU&UUAAAUAUAAACAAAACAAUU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN1299_c0_g1_2578_TPlot.pdf
TRINITY_DN12_c0_g1:340	si_a350	TRINITY_DN12_c0_g1	329	349	340	-20.30	-14.50	0.714285714285714	9.5	5-15,345-335;17-21,333-329	1-4,349-346[UP5];16-16,334-334[SIL]	(((((.(((((((((((....&....))))))))))).)))))	UCAAGUUAGAAUUAGUAAAUA&AAAAUAUUAAUUCUAUUUUGA	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN12_c0_g1_340_TPlot.pdf
TRINITY_DN13002_c0_g1:1098	si_a301	TRINITY_DN13002_c0_g1	1087	1107	1098	-27.80	-20.40	0.733812949640288	12.5	5-17,1103-1091	1-4,1107-1104[UP5];18-21,1090-1087[UP3]	....(((((((((((((....&....)))))))))))))....	UACACCGAGCGGAUCUUCCAC&AAAAAAGAUUCGCUUGGAUUU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN13002_c0_g1_1098_TPlot.pdf
TRINITY_DN13002_c0_g1:674	si_s90	TRINITY_DN13002_c0_g1	663	683	674	-35.30	-23.20	0.657223796033994	7	3-14,681-670;16-16,668-668;18-20,666-664	1-2,683-682[UP5];15-15,669-669[SIL];17-17,667-667[SIL];21-21,663-663[UP3]	.(((.(.((((((((((((..&..)))))))))))).).))).	ACGAUGGGAGGAAGAAGAAUC&CUUUCUUCUUCUUCGCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN13002_c0_g1_674_TPlot.pdf
TRINITY_DN13002_c0_g1:676	si_s73	TRINITY_DN13002_c0_g1	665	686	676	-24.00	-16.20	0.675	10	1-2,686-685;4-18,682-668	3-3,684-683[AILt];19-21,667-665[UP3]	...(((((((((((((((..((&))-.)))))))))))))))...	GAUGGGAGGAAGAAGAAUCUGA&UC-UAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13002_c0_g1_676_TPlot.pdf
TRINITY_DN1300_c0_g1:770	si_s74	TRINITY_DN1300_c0_g1	759	779	770	-25.00	-16.40	0.656	10	1-2,779-778;4-17,776-763	3-3,777-777[SIL];18-21,762-759[UP3]	....((((((((((((((.((&)).))))))))))))))....	AAACGGAAAGAAGAGGAGAAG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1300_c0_g1_770_TPlot.pdf
TRINITY_DN13011_c0_g1:1116	si_a410	TRINITY_DN13011_c0_g1	1105	1125	1116	-17.80	-11.80	0.662921348314607	9	1-14,1125-1112	15-21,1111-1105[UP3]	.......((((((((((((((&)))))))))))))).......	ACUCGAAAAAUGUAAACGAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999998333509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN13011_c0_g1_1116_TPlot.pdf
TRINITY_DN13011_c0_g1:1130	si_a491	TRINITY_DN13011_c0_g1	1119	1139	1130	-29.90	-19.60	0.65551839464883	6	1-8,1139-1132;11-20,1129-1120	9-10,1131-1130[SIL];21-21,1119-1119[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	AACGAAAAAUGCGAUAUUCUA&UAGAAUAUGUCGUUUUUCGUC	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN13011_c0_g1_1130_TPlot.pdf
TRINITY_DN13011_c0_g1:977	si_a152	TRINITY_DN13011_c0_g1	966	986	977	-29.20	-20.10	0.688356164383562	7	1-10,986-977;12-16,975-971;18-19,969-968	11-11,976-976[SIL];17-17,970-970[SIL];20-21,967-966[UP3]	..((.(((((.((((((((((&)))))))))).))))).))..	GUGACUGACCAUAGAGCAACA&UGUUGUUUUAAGGUCAAUCUA	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN13011_c0_g1_977_TPlot.pdf
TRINITY_DN13011_c0_g2:1063	si_a300	TRINITY_DN13011_c0_g2	1052	1072	1063	-28.20	-20.30	0.719858156028369	13.5	7-7,1066-1066;9-21,1064-1052	1-6,1072-1067[UP5];8-8,1065-1065[SIL]	(((((((((((((.(......&......).)))))))))))))	AGUCCAAGCGAAUGUACCCAU&UAAAAAAGAUUCGCUUGGAUU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN13011_c0_g2_1063_TPlot.pdf
TRINITY_DN13011_c0_g2:1079	si_a403	TRINITY_DN13011_c0_g2	1061	1088	1079	-22.00	-17.10	0.777272727272727	9	1-14,1088-1075;15-21,1067-1061	x-x,1074-1068[BULt]	(((((((.......((((((((((((((&))))))))))))))-------)))))))	GAAUGUACCCAUCCAACAAAACAGUUCU&AGAAUUGUUUUGUU-------UAUAUUU	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN13011_c0_g2_1079_TPlot.pdf
TRINITY_DN13011_c0_g2:1080	si_a402	TRINITY_DN13011_c0_g2	1062	1089	1080	-22.40	-16.70	0.745535714285714	9	1-15,1089-1075;16-21,1067-1062	x-x,1074-1068[BULt]	((((((.......(((((((((((((((&)))))))))))))))-------))))))	AAUGUACCCAUCCAACAAAACAGUUCUG&UAGAAUUGUUUUGUU-------UAUAUU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN13011_c0_g2_1080_TPlot.pdf
TRINITY_DN13011_c0_g2:1086	si_a396	TRINITY_DN13011_c0_g2	1075	1094	1086	-24.70	-20.80	0.842105263157895	4	1-4,1094-1091;6-21,1090-1075	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AACAAAACAGUUCUGU-UUCU&AGAAUAUAGAAUUGUUUUGUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN13011_c0_g2_1086_TPlot.pdf
TRINITY_DN13011_c0_g2:743	si_a150	TRINITY_DN13011_c0_g2	730	752	743	-29.90	-23.40	0.782608695652174	6	1-10,752-743;11-19,740-732	x-x,742-741[BULt];20-21,731-730[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	AUUUGACCUUACAAAACAACAAC&GUUGUUGUUU--UAAGGUCAAUC	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN13011_c0_g2_743_TPlot.pdf
TRINITY_DN13016_c0_g1:604	si_a285	TRINITY_DN13016_c0_g1	589	613	604	-28.30	-18.90	0.667844522968198	9.5	3-14,611-600;15-20,595-590	1-2,613-612[UP5];x-x,599-596[BULt];21-21,589-589[UP3]	.((((((....((((((((((((..&..))))))))))))----)))))).	CUUUUAGCUUUAUCCAAGCGAUUGG&AAGAUCGCUUGGAU----UUAAAAA	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN13016_c0_g1_604_TPlot.pdf
TRINITY_DN1301_c0_g1:2381	si_a785	TRINITY_DN1301_c0_g1	2370	2389	2381	-25.90	-17.80	0.687258687258687	5	1-7,2389-2383;9-20,2382-2371	8-8,x-x[BULq];21-21,2370-2370[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	UGGAAUAGAAAAA-AGAAGGG&CUCUUCUAUUUUUCUAUUUUC	4	0.999999999999344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1301_c0_g1_2381_TPlot.pdf
TRINITY_DN1301_c0_g1:2383	si_a783	TRINITY_DN1301_c0_g1	2372	2391	2383	-24.70	-18.10	0.732793522267207	6.5	3-9,2389-2383;11-21,2382-2372	1-2,2391-2390[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	GAAUAGAAAAA-AGAAGGGCA&AACUCUUCUAUUUUUCUAUUU	2	0.997154840359294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1301_c0_g1_2383_TPlot.pdf
TRINITY_DN1301_c0_g1:2547	si_a68	TRINITY_DN1301_c0_g1	2531	2556	2547	-25.40	-17.00	0.669291338582677	11	1-9,2556-2548;11-15,2546-2542;16-21,2536-2531	10-10,2547-2547[SIL];x-x,2541-2537[BULt]	((((((.....(((((.(((((((((&))))))))).)))))-----))))))	UGAAAGAGCGUGCAGUAUGAAGGAGG&CUUCUUUCAAAUUGU-----UUUUCA	4	0.99999999998457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1301_c0_g1_2547_TPlot.pdf
TRINITY_DN1301_c0_g1:257	si_a898	TRINITY_DN1301_c0_g1	246	269	257	-20.50	-13.60	0.663414634146341	13	1-9,269-261;10-17,257-250	x-x,260-258[BULt];18-21,249-246[UP3]	....((((((((...(((((((((&)))))))))---))))))))....	CAUAGUGUUACUGUUUGUUAUUGC&GUAAUAAUA---AGUAAUAUAAAA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN1301_c0_g1_257_TPlot.pdf
TRINITY_DN1301_c0_g1:2672	si_s78	TRINITY_DN1301_c0_g1	2661	2681	2672	-26.20	-17.10	0.652671755725191	14.5	6-9,2676-2673;11-21,2671-2661	1-5,2681-2677[UP5];10-10,2672-2672[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	GGAAGAAAGGGUAGGGUAGUU&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1301_c0_g1_2672_TPlot.pdf
TRINITY_DN1301_c0_g1:2700	si_s798	TRINITY_DN1301_c0_g1	2689	2711	2700	-29.30	-20.30	0.692832764505119	10	1-8,2711-2704;10-19,2700-2691	9-9,2703-2701[AILt];20-21,2690-2689[UP3]	..((((((((((...((((((((&))))))))--.))))))))))..	AAGACGGAGGUAUACAAUACGAG&CUCGUAUU--UUAUCUUCGUUAC	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN1301_c0_g1_2700_TPlot.pdf
TRINITY_DN1301_c0_g1:2704	si_s796	TRINITY_DN1301_c0_g1	2691	2713	2704	-30.30	-20.00	0.66006600660066	10.5	3-10,2711-2704;12-21,2700-2691	1-2,2713-2712[UP5];11-11,2703-2701[AILt]	((((((((((...((((((((..&..))))))))--.))))))))))	GACGGAGGUAUACAAUACGAGAG&AGCUCGUAUU--UUAUCUUCGUU	2	0.999851046052001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN1301_c0_g1_2704_TPlot.pdf
TRINITY_DN1301_c0_g1:2785	si_s606	TRINITY_DN1301_c0_g1	2773	2795	2785	-28.20	-20.80	0.73758865248227	6.5	1-5,2795-2791;6-14,2789-2781;17-21,2777-2773	x-x,2790-2790[BULt];15-16,2780-2778[AILt]	(((((...(((((((((.(((((&)))))-)))))))))-..)))))	UGGAUGGGGAGAAAGAUGUCGCU&AGCGA-AUCUUUUUU-AAAUCCA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN1301_c0_g1_2785_TPlot.pdf
TRINITY_DN13021_c0_g1:1631	si_a287	TRINITY_DN13021_c0_g1	1620	1640	1631	-29.20	-19.90	0.681506849315068	10	1-14,1640-1627	15-21,1626-1620[UP3]	.......((((((((((((((&)))))))))))))).......	CGCUGCAAAGUCUAAGCGGUC&GAUCGCUUGGAUUUAAAAAAG	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN13021_c0_g1_1631_TPlot.pdf
TRINITY_DN13021_c0_g1:1634	si_a284	TRINITY_DN13021_c0_g1	1623	1643	1634	-28.30	-21.20	0.749116607773852	9.5	3-17,1641-1627	1-2,1643-1642[UP5];18-21,1626-1623[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGCAAAGUCUAAGCGGUCUCU&AAAGAUCGCUUGGAUUUAAAA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN13021_c0_g1_1634_TPlot.pdf
TRINITY_DN13021_c0_g1:1635	si_a283	TRINITY_DN13021_c0_g1	1624	1644	1635	-28.30	-21.20	0.749116607773852	10	4-18,1641-1627	1-3,1644-1642[UP5];19-21,1626-1624[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCAAAGUCUAAGCGGUCUCUU&AAAAGAUCGCUUGGAUUUAAA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN13021_c0_g1_1635_TPlot.pdf
TRINITY_DN13021_c0_g1:1637	si_a281	TRINITY_DN13021_c0_g1	1626	1646	1637	-31.70	-21.60	0.681388012618297	7	2-4,1645-1643;6-20,1641-1627	1-1,1646-1646[UP5];5-5,1642-1642[SIL];21-21,1626-1626[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	AAAGUCUAAGCGGUCUCUUUA&CGAAAAGAUCGCUUGGAUUUA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a281_TRINITY_DN13021_c0_g1_1637_TPlot.pdf
TRINITY_DN13021_c0_g1:1720	si_s181	TRINITY_DN13021_c0_g1	1711	1729	1720	-34.60	-23.80	0.687861271676301	9	1-10,1729-1720;13-16,1719-1716	11-12,x-x[BULq];17-21,1715-1711[UP3]	.....((((--((((((((((&))))))))))..)))).....	UCUCUUCGU--CUCGGGCAUC&GAUGCCCGAGUAACGAUUAUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN13021_c0_g1_1720_TPlot.pdf
TRINITY_DN13021_c0_g1:1721	si_s180	TRINITY_DN13021_c0_g1	1712	1730	1721	-35.30	-23.80	0.674220963172805	8	2-11,1729-1720;14-17,1719-1716	1-1,1730-1730[UP5];12-13,x-x[BULq];18-21,1715-1712[UP3]	....((((--((((((((((.&.))))))))))..))))....	CUCUUCGU--CUCGGGCAUCG&AGAUGCCCGAGUAACGAUUAU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s180_TRINITY_DN13021_c0_g1_1721_TPlot.pdf
TRINITY_DN13021_c0_g1:1724	si_s177	TRINITY_DN13021_c0_g1	1715	1733	1724	-35.10	-23.80	0.678062678062678	10	5-14,1729-1720;17-20,1719-1716	1-4,1733-1730[UP5];15-16,x-x[BULq];21-21,1715-1715[UP3]	.((((--((((((((((....&....))))))))))..)))).	UUCGU--CUCGGGCAUCGGUC&UAAAGAUGCCCGAGUAACGAU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s177_TRINITY_DN13021_c0_g1_1724_TPlot.pdf
TRINITY_DN13021_c0_g1:3878	si_s628	TRINITY_DN13021_c0_g1	3864	3887	3878	-35.40	-23.74	0.670621468926554	9	1-2,3887-3886;4-13,3884-3875;15-21,3870-3864	3-3,3885-3885[SIL];14-14,3874-3871[AILt]	(((((((....((((((((((.((&)).))))))))))---.)))))))	GAGCGCCGCAAAUGGAAAGAUGGC&GCGAUCUUUUCGU---AGGCGUUU	4	0.999923241221074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN13021_c0_g1_3878_TPlot.pdf
TRINITY_DN13021_c0_g1:6226	si_s95	TRINITY_DN13021_c0_g1	6214	6235	6226	-36.30	-24.50	0.674931129476584	6.5	2-7,6234-6229;9-17,6227-6219;18-20,6217-6215	1-1,6235-6235[UP5];8-8,6228-6228[SIL];x-x,6218-6218[BULt];21-21,6214-6214[UP3]	.(((.(((((((((.((((((.&.)))))).)))))))))-))).	GCGACUCCGAAGCGCAGAAGGU&UUCUUCUUCGCUUCGGA-UUGG	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN13021_c0_g1_6226_TPlot.pdf
TRINITY_DN13021_c0_g1:6231	si_s90	TRINITY_DN13021_c0_g1	6220	6243	6231	-35.30	-25.00	0.708215297450425	10	1-6,6243-6238;7-12,6234-6229;14-21,6227-6220	x-x,6237-6235[BULt];13-13,6228-6228[SIL]	((((((((.((((((...((((((&))))))---)))))).))))))))	CCGAAGCGCAGAAGGUCAAGGAGG&CUUUCU---UCUUCUUCGCUUCGG	4	0.999990652142784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN13021_c0_g1_6231_TPlot.pdf
TRINITY_DN13021_c0_g1:7190	si_a596	TRINITY_DN13021_c0_g1	7179	7198	7190	-32.30	-21.70	0.671826625386997	8.5	2-3,7197-7196;5-10,7195-7190;13-20,7187-7180	1-1,7198-7198[UP5];4-4,x-x[BULq];11-12,7189-7188[SIL];21-21,7179-7179[UP3]	.((((((((..((((((-((.&.)).))))))..)))))))).	CGAUUGCGAUUAUUCUG-CCG&AGGACAGAAUUUUCGCAAUUC	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN13021_c0_g1_7190_TPlot.pdf
TRINITY_DN13022_c0_g1:899	si_s75	TRINITY_DN13022_c0_g1	887	908	899	-24.00	-16.00	0.666666666666667	8.5	1-14,908-895;15-19,893-889	x-x,894-894[BULt];20-21,888-887[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	ACAGAGGCAAAGAGGGGAGAUA&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13022_c0_g1_899_TPlot.pdf
TRINITY_DN13022_c1_g1:39	si_a115	TRINITY_DN13022_c1_g1	28	48	39	-30.40	-20.30	0.667763157894737	11	5-18,44-31	1-4,48-45[UP5];19-21,30-28[UP3]	...((((((((((((((....&....))))))))))))))...	AGAAUAGAGCAAGCUCGAACA&AAUACGAGCUUGUUUUAUAGC	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN13022_c1_g1_39_TPlot.pdf
TRINITY_DN13023_c0_g1:1108	si_a502	TRINITY_DN13023_c0_g1	1096	1117	1108	-32.10	-20.90	0.651090342679128	8.5	1-2,1117-1116;4-14,1114-1104;15-16,1102-1101;18-19,1099-1098	3-3,1115-1115[SIL];x-x,1103-1103[BULt];17-17,1100-1100[SIL];20-21,1097-1096[UP3]	..((.((.(((((((((((.((&)).)))))))))))-)).))..	GGUCGGAGGGAGGACGAAGUAC&GUUUUUCGUCUUCC-UUGGAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN13023_c0_g1_1108_TPlot.pdf
TRINITY_DN13023_c0_g1:1111	si_a499	TRINITY_DN13023_c0_g1	1100	1120	1111	-35.20	-27.00	0.767045454545454	7	1-5,1120-1116;7-19,1114-1102	6-6,1115-1115[SIL];20-21,1101-1100[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	GGAGGGAGGACGAAGUACGGC&GUCGUUUUUCGUCUUCCUUGG	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN13023_c0_g1_1111_TPlot.pdf
TRINITY_DN13023_c0_g1:1112	si_a498	TRINITY_DN13023_c0_g1	1101	1121	1112	-33.50	-27.10	0.808955223880597	7	2-6,1120-1116;8-20,1114-1102	1-1,1121-1121[UP5];7-7,1115-1115[SIL];21-21,1101-1101[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	GAGGGAGGACGAAGUACGGCG&UGUCGUUUUUCGUCUUCCUUG	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN13023_c0_g1_1112_TPlot.pdf
TRINITY_DN13023_c0_g1:1113	si_a497	TRINITY_DN13023_c0_g1	1102	1122	1113	-32.00	-26.60	0.83125	8	3-7,1120-1116;9-21,1114-1102	1-2,1122-1121[UP5];8-8,1115-1115[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AGGGAGGACGAAGUACGGCGA&AUGUCGUUUUUCGUCUUCCUU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN13023_c0_g1_1113_TPlot.pdf
TRINITY_DN13023_c0_g1:1114	si_a496	TRINITY_DN13023_c0_g1	1103	1123	1114	-32.40	-25.80	0.796296296296296	10	4-8,1120-1116;10-21,1114-1103	1-3,1123-1121[UP5];9-9,1115-1115[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GGGAGGACGAAGUACGGCGAG&UAUGUCGUUUUUCGUCUUCCU	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN13023_c0_g1_1114_TPlot.pdf
TRINITY_DN13023_c0_g1:1115	si_a495	TRINITY_DN13023_c0_g1	1104	1124	1115	-31.90	-24.70	0.774294670846395	11.5	5-9,1120-1116;11-21,1114-1104	1-4,1124-1121[UP5];10-10,1115-1115[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GGAGGACGAAGUACGGCGAGA&AUAUGUCGUUUUUCGUCUUCC	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN13023_c0_g1_1115_TPlot.pdf
TRINITY_DN13023_c0_g1:1116	si_a494	TRINITY_DN13023_c0_g1	1105	1125	1116	-29.50	-21.40	0.725423728813559	13.5	6-10,1120-1116;12-21,1114-1105	1-5,1125-1121[UP5];11-11,1115-1115[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GAGGACGAAGUACGGCGAGAG&AAUAUGUCGUUUUUCGUCUUC	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN13023_c0_g1_1116_TPlot.pdf
TRINITY_DN13024_c1_g1:122	si_s317	TRINITY_DN13024_c1_g1	111	131	122	-33.10	-22.40	0.676737160120846	6	1-5,131-127;7-17,125-115	6-6,126-126[SIL];18-21,114-111[UP3]	....(((((((((((.(((((&))))).)))))))))))....	AUUCGUAACAAGAAGAACAGA&UCUGUCCUUCUUGUUACAAAC	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN13024_c1_g1_122_TPlot.pdf
TRINITY_DN13024_c1_g1:124	si_s315	TRINITY_DN13024_c1_g1	113	133	124	-31.60	-23.30	0.737341772151899	5	2-7,132-127;9-19,125-115	1-1,133-133[UP5];8-8,126-126[SIL];20-21,114-113[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	UCGUAACAAGAAGAACAGAAG&AUUCUGUCCUUCUUGUUACAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN13024_c1_g1_124_TPlot.pdf
TRINITY_DN13024_c1_g1:125	si_s314	TRINITY_DN13024_c1_g1	114	134	125	-31.50	-23.30	0.73968253968254	6	3-8,132-127;10-20,125-115	1-2,134-133[UP5];9-9,126-126[SIL];21-21,114-114[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	CGUAACAAGAAGAACAGAAGC&AAUUCUGUCCUUCUUGUUACA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN13024_c1_g1_125_TPlot.pdf
TRINITY_DN13024_c1_g1:126	si_s313	TRINITY_DN13024_c1_g1	115	135	126	-30.80	-22.90	0.743506493506493	7	4-9,132-127;11-21,125-115	1-3,135-133[UP5];10-10,126-126[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GUAACAAGAAGAACAGAAGCU&AAAUUCUGUCCUUCUUGUUAC	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN13024_c1_g1_126_TPlot.pdf
TRINITY_DN13024_c1_g1:127	si_s312	TRINITY_DN13024_c1_g1	116	136	127	-29.00	-19.70	0.679310344827586	9	5-10,132-127;12-21,125-116	1-4,136-133[UP5];11-11,126-126[SIL]	((((((((((.((((((....&....)))))).))))))))))	UAACAAGAAGAACAGAAGCUC&AAAAUUCUGUCCUUCUUGUUA	4	0.999999973411668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN13024_c1_g1_127_TPlot.pdf
TRINITY_DN13024_c1_g1:2765	si_a758	TRINITY_DN13024_c1_g1	2754	2774	2765	-34.00	-23.10	0.679411764705882	9.5	1-10,2774-2765;13-17,2762-2758	11-12,2764-2763[SIL];18-21,2757-2754[UP3]	....(((((..((((((((((&))))))))))..)))))....	GACCCGAAAAACCAGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN13024_c1_g1_2765_TPlot.pdf
TRINITY_DN13024_c1_g1:3206	si_a404	TRINITY_DN13024_c1_g1	3195	3216	3206	-21.70	-14.70	0.67741935483871	8	3-8,3214-3209;10-21,3206-3195	1-2,3216-3215[UP5];9-9,3208-3207[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	UAAAUAUAAACACUAGCAAUAA&GAAUUGUU-UUGUUUAUAUUUA	4	0.99999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN13024_c1_g1_3206_TPlot.pdf
TRINITY_DN13024_c1_g1:3646	si_a466	TRINITY_DN13024_c1_g1	3635	3655	3646	-21.50	-14.40	0.669767441860465	5.5	1-7,3655-3649;9-17,3647-3639;20-21,3636-3635	8-8,3648-3648[SIL];18-19,3638-3637[SIL]	((..(((((((((.(((((((&))))))).)))))))))..))	GCUUUAAUUACAUCUUAUGUA&UAUAUAAUAUGUAAUUAUUGU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN13024_c1_g1_3646_TPlot.pdf
TRINITY_DN13024_c1_g1:3647	si_a465	TRINITY_DN13024_c1_g1	3636	3656	3647	-20.90	-14.00	0.669856459330144	5	1-8,3656-3649;10-18,3647-3639;21-21,3636-3636	9-9,3648-3648[SIL];19-20,3638-3637[SIL]	(..(((((((((.((((((((&)))))))).)))))))))..)	CUUUAAUUACAUCUUAUGUAU&AUAUAUAAUAUGUAAUUAUUG	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN13024_c1_g1_3647_TPlot.pdf
TRINITY_DN13024_c1_g1:3648	si_a464	TRINITY_DN13024_c1_g1	3637	3657	3648	-19.60	-13.30	0.678571428571429	6	2-9,3656-3649;11-19,3647-3639	1-1,3657-3657[UP5];10-10,3648-3648[SIL];20-21,3638-3637[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UUUAAUUACAUCUUAUGUAUU&UAUAUAUAAUAUGUAAUUAUU	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN13024_c1_g1_3648_TPlot.pdf
TRINITY_DN13024_c1_g1:3649	si_a463	TRINITY_DN13024_c1_g1	3638	3658	3649	-19.70	-13.30	0.6751269035533	7	3-10,3656-3649;12-20,3647-3639	1-2,3658-3657[UP5];11-11,3648-3648[SIL];21-21,3638-3638[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UUAAUUACAUCUUAUGUAUUU&UUAUAUAUAAUAUGUAAUUAU	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN13024_c1_g1_3649_TPlot.pdf
TRINITY_DN13026_c1_g1:322	si_a483	TRINITY_DN13026_c1_g1	307	331	322	-27.40	-18.10	0.66058394160584	8	1-15,331-317;16-21,312-307	x-x,316-313[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	ACGAUACUGCUGUUUUAUAUAGCGA&UUGUUAUAUAGAAUA----UGUCGU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN13026_c1_g1_322_TPlot.pdf
TRINITY_DN13026_c1_g1:323	si_a482	TRINITY_DN13026_c1_g1	308	332	323	-26.70	-18.10	0.677902621722847	8	1-16,332-317;17-21,312-308	x-x,316-313[BULt]	(((((....((((((((((((((((&))))))))))))))))----)))))	CGAUACUGCUGUUUUAUAUAGCGAU&AUUGUUAUAUAGAAUA----UGUCG	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN13026_c1_g1_323_TPlot.pdf
TRINITY_DN13026_c1_g1:330	si_a475	TRINITY_DN13026_c1_g1	319	339	330	-23.50	-15.70	0.668085106382979	9.5	5-21,335-319	1-4,339-336[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUAUAUAGCGAUAAUGAUU&UGUAAUUAUUGUUAUAUAGAA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN13026_c1_g1_330_TPlot.pdf
TRINITY_DN13027_c0_g1:933	si_s75	TRINITY_DN13027_c0_g1	922	942	933	-24.00	-15.90	0.6625	10	3-16,940-927	1-2,942-941[UP5];17-21,926-922[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUAUUGGAAAGAGAAGAAAAU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13027_c0_g1_933_TPlot.pdf
TRINITY_DN1302_c0_g1:4059	si_s352	TRINITY_DN1302_c0_g1	4048	4068	4059	-27.20	-17.70	0.650735294117647	5.5	1-17,4068-4052	18-21,4051-4048[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGACAUCUAUUUCUUUAUUUU&GAGAUAAAGAAAUAGAUUGAA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN1302_c0_g1_4059_TPlot.pdf
TRINITY_DN13031_c0_g1:686	si_a18	TRINITY_DN13031_c0_g1	675	695	686	-26.30	-18.70	0.711026615969582	8	2-10,694-686;12-19,684-677	1-1,695-695[UP5];11-11,685-685[SIL];20-21,676-675[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UCACUAAAAAAGGAUGGGCUG&AAGCCUAUUUAUUUUUAGUUC	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN13031_c0_g1_686_TPlot.pdf
TRINITY_DN13031_c0_g1:8150	si_s68	TRINITY_DN13031_c0_g1	8139	8159	8150	-23.10	-15.80	0.683982683982684	12.5	6-21,8154-8139	1-5,8159-8155[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGAAGGAAGAUGGAUCAUA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13031_c0_g1_8150_TPlot.pdf
TRINITY_DN13032_c0_g1:108	si_s840	TRINITY_DN13032_c0_g1	96	117	108	-32.20	-21.80	0.677018633540373	6.5	2-11,116-107;13-16,106-103;17-21,100-96	1-1,117-117[UP5];12-12,x-x[BULq];x-x,102-101[BULt]	(((((..((((-((((((((((.&.)))))))))).))))--)))))	UCGAUUUUCGC-UCUUUCAGAUG&AAUUUGAAAGAAGCGA--GUCGA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s840_TRINITY_DN13032_c0_g1_108_TPlot.pdf
TRINITY_DN13032_c0_g1:1368	si_a409	TRINITY_DN13032_c0_g1	1357	1380	1368	-19.50	-14.70	0.753846153846154	12	1-7,1380-1374;8-20,1370-1358	x-x,1373-1371[BULt];21-21,1357-1357[UP3]	.(((((((((((((...(((((((&)))))))---))))))))))))).	CUAUUUAAAUAUGGAACGCGAAGC&GUUUUGU---UUAUAUUUAAAUAA	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN13032_c0_g1_1368_TPlot.pdf
TRINITY_DN13032_c0_g1:165	si_s79	TRINITY_DN13032_c0_g1	154	175	165	-26.20	-17.70	0.675572519083969	9	2-9,174-167;10-18,165-157	1-1,175-175[UP5];x-x,166-166[BULt];19-21,156-154[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AUAGAGAGAGGAUAAGAAGAGC&UUUUUUCUU-UCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN13032_c0_g1_165_TPlot.pdf
TRINITY_DN13032_c0_g1:169	si_s76	TRINITY_DN13032_c0_g1	157	178	169	-23.60	-17.50	0.741525423728813	12	5-12,174-167;13-21,165-157	1-4,178-175[UP5];x-x,166-166[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	GAGAGAGGAUAAGAAGAGCAAC&AUUUUUUUUCUU-UCCUUUCUU	2	0.999999999983743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13032_c0_g1_169_TPlot.pdf
TRINITY_DN13032_c0_g1:170	si_s75	TRINITY_DN13032_c0_g1	158	179	170	-24.00	-16.40	0.683333333333333	12.5	6-13,174-167;14-21,165-158	1-5,179-175[UP5];x-x,166-166[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	AGAGAGGAUAAGAAGAGCAACU&UAUUUUUUUUCUU-UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13032_c0_g1_170_TPlot.pdf
TRINITY_DN13032_c0_g1:300	si_s898	TRINITY_DN13032_c0_g1	289	309	300	-30.70	-19.98	0.650814332247557	9	1-11,309-299;15-18,295-292	12-14,298-296[SIL];19-21,291-289[UP3]	...((((...(((((((((((&)))))))))))...))))...	CAAGAAAGUUAGGAGAAGGCC&GGCUUUCUCUUCAAUUUCAAU	4	0.999999999812447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN13032_c0_g1_300_TPlot.pdf
TRINITY_DN13033_c0_g4:210	si_a493	TRINITY_DN13033_c0_g4	199	220	210	-29.50	-19.70	0.667796610169492	8.5	2-7,219-214;8-9,212-211;11-21,209-199	1-1,220-220[UP5];x-x,213-213[BULt];10-10,210-210[SIL]	(((((((((((.((.((((((.&.))))))-)).)))))))))))	AAGGCGGAGGAGGAGCGUAUUG&GAAUAUG-UCGUUUUUCGUCUU	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN13033_c0_g4_210_TPlot.pdf
TRINITY_DN13036_c0_g1:1490	si_a404	TRINITY_DN13036_c0_g1	1479	1499	1490	-21.70	-14.50	0.668202764976959	10.5	4-18,1496-1482	1-3,1499-1497[UP5];19-21,1481-1479[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGCAUAUGAACGGAACAAGCU&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN13036_c0_g1_1490_TPlot.pdf
TRINITY_DN13036_c0_g1:1491	si_a403	TRINITY_DN13036_c0_g1	1480	1499	1491	-22.00	-14.70	0.668181818181818	8.5	1-2,1499-1498;5-19,1496-1482	3-4,1497-1497[AILq];20-21,1481-1480[UP3]	..(((((((((((((((.-((&))..)))))))))))))))..	GCAUAUGAACGGAACAAG-CU&AGAAUUGUUUUGUUUAUAUUU	4	0.99999999999921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN13036_c0_g1_1491_TPlot.pdf
TRINITY_DN1303_c0_g1:612	si_a227	TRINITY_DN1303_c0_g1	601	623	612	-26.80	-17.70	0.66044776119403	11.5	1-8,623-616;10-19,612-603	9-9,615-613[AILt];20-21,602-601[UP3]	..((((((((((...((((((((&))))))))--.))))))))))..	UUUUGGUUAUGGUACAGCAUGGG&CUCAUGUU--UCUAUAAUCAAUU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN1303_c0_g1_612_TPlot.pdf
TRINITY_DN13040_c0_g1:1477	si_a495	TRINITY_DN13040_c0_g1	1465	1486	1477	-31.90	-20.90	0.655172413793103	13	5-7,1482-1480;9-18,1478-1469;19-21,1467-1465	1-4,1486-1483[UP5];8-8,1479-1479[SIL];x-x,1468-1468[BULt]	(((.((((((((((.(((....&....))).))))))))))-)))	GGACGGGCGAGGAAGGACUAAA&AUAUGUCGUUUUUCGUCU-UCC	2	0.999999866811619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN13040_c0_g1_1477_TPlot.pdf
TRINITY_DN13044_c0_g1:2692	si_a799	TRINITY_DN13044_c0_g1	2680	2701	2692	-32.50	-23.30	0.716923076923077	9	2-12,2700-2690;13-18,2688-2683	1-1,2701-2701[UP5];x-x,2689-2689[BULt];19-21,2682-2680[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	UGGGCUUCGAGAUUGGGAGGUC&UAUUUUCCAAUC-CGAAGCGAA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN13044_c0_g1_2692_TPlot.pdf
TRINITY_DN13044_c0_g2:803	si_a603	TRINITY_DN13044_c0_g2	792	812	803	-29.80	-19.60	0.657718120805369	12	5-15,808-798;18-20,795-793	1-4,812-809[UP5];16-17,797-796[SIL];21-21,792-792[UP3]	.(((..(((((((((((....&....)))))))))))..))).	CCGACCGGAGUUGCGGACUCU&AAUUUUCGCAAUUCCAAUCGA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN13044_c0_g2_803_TPlot.pdf
TRINITY_DN13045_c0_g1:2982	si_s440	TRINITY_DN13045_c0_g1	2971	2991	2982	-21.60	-14.08	0.651851851851852	8	2-6,2990-2986;10-21,2982-2971	1-1,2991-2991[UP5];7-9,2985-2983[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	UUGUUAUAUGUACAUUGUAAC&AUUACAUAUUAUAUAUAACAA	2	0.995377114934657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN13045_c0_g1_2982_TPlot.pdf
TRINITY_DN13064_c0_g1:2626	si_a303	TRINITY_DN13064_c0_g1	2615	2635	2626	-28.40	-19.10	0.672535211267606	13.5	7-21,2629-2615	1-6,2635-2630[UP5]	(((((((((((((((......&......)))))))))))))))	AUGAAUCCAAGUGGACAGUGG&AAAAGAUUCGCUUGGAUUUAU	2	0.994143829972238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN13064_c0_g1_2626_TPlot.pdf
TRINITY_DN13064_c0_g1:2637	si_a186	TRINITY_DN13064_c0_g1	2625	2646	2637	-31.50	-21.20	0.673015873015873	14.5	7-13,2640-2634;14-21,2632-2625	1-6,2646-2641[UP5];x-x,2633-2633[BULt]	((((((((.(((((((......&......)))))))-))))))))	GUGGACAGUGGAGAGGCAUCUG&AUAAUAUCUUUCC-CUGUUCAC	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN13064_c0_g1_2637_TPlot.pdf
TRINITY_DN13064_c0_g1:401	si_s485	TRINITY_DN13064_c0_g1	390	410	401	-18.10	-14.20	0.784530386740331	8	2-18,409-393	1-1,410-410[UP5];19-21,392-390[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAAAUAUUUAGAUGAGUAUGA&CUAUAUUUAUUUAAAUAUAAA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN13064_c0_g1_401_TPlot.pdf
TRINITY_DN13067_c0_g5:1190	si_a17	TRINITY_DN13067_c0_g5	1179	1199	1190	-24.30	-16.40	0.674897119341564	9	4-12,1196-1188;14-20,1186-1180	1-3,1199-1197[UP5];13-13,1187-1187[SIL];21-21,1179-1179[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	CACUAAAACUAGAUAGGUACA&AAAGCCUAUUUAUUUUUAGUU	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN13067_c0_g5_1190_TPlot.pdf
TRINITY_DN13068_c0_g1:582	si_a23	TRINITY_DN13068_c0_g1	571	591	582	-22.80	-15.50	0.679824561403509	9	3-11,589-581;13-20,579-572	1-2,591-590[UP5];12-12,580-580[SIL];21-21,571-571[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	ACUUAGAACCAAGAAUGAGGG&UAUUUAUUUUUAGUUCUAAGA	2	0.99689584287701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN13068_c0_g1_582_TPlot.pdf
TRINITY_DN1306_c0_g1:1407	si_a632	TRINITY_DN1306_c0_g1	1396	1416	1407	-26.10	-17.70	0.67816091954023	8	2-18,1415-1399	1-1,1416-1416[UP5];19-21,1398-1396[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GGGCAAAAAGAUUGGCGUAAC&AUUAUGUCGAUUUUUUUGAGU	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1306_c0_g1_1407_TPlot.pdf
TRINITY_DN1306_c0_g1:1408	si_a631	TRINITY_DN1306_c0_g1	1397	1417	1408	-25.70	-17.70	0.688715953307393	8.5	3-19,1415-1399	1-2,1417-1416[UP5];20-21,1398-1397[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GGCAAAAAGAUUGGCGUAACC&UAUUAUGUCGAUUUUUUUGAG	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN1306_c0_g1_1408_TPlot.pdf
TRINITY_DN1306_c0_g1:1409	si_a630	TRINITY_DN1306_c0_g1	1398	1418	1409	-25.80	-17.70	0.686046511627907	9.5	4-20,1415-1399	1-3,1418-1416[UP5];21-21,1398-1398[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GCAAAAAGAUUGGCGUAACCA&GUAUUAUGUCGAUUUUUUUGA	4	0.99991663427952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN1306_c0_g1_1409_TPlot.pdf
TRINITY_DN1306_c0_g1:1620	si_a318	TRINITY_DN1306_c0_g1	1609	1629	1620	-22.50	-17.90	0.795555555555555	7	1-9,1629-1621;11-19,1619-1611	10-10,1620-1620[SIL];20-21,1610-1609[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAGAGGAGAUCUUGGAUGAAU&AUUUAUCCAUGAUUUUUUUAU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1306_c0_g1_1620_TPlot.pdf
TRINITY_DN13070_c2_g1:135	si_a471	TRINITY_DN13070_c2_g1	124	144	135	-21.10	-14.00	0.663507109004739	11.5	5-19,140-126	1-4,144-141[UP5];20-21,125-124[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCAUAGCAAUAGUUAUAAUUA&AAUAUGUAAUUAUUGUUAUAU	4	0.999999900358033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN13070_c2_g1_135_TPlot.pdf
TRINITY_DN13070_c2_g1:398	si_a139	TRINITY_DN13070_c2_g1	388	407	398	-25.90	-18.00	0.694980694980695	4	2-11,406-397;13-21,396-388	1-1,407-407[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AAGCAAUAA-GAUUAAUUACG&AGUAAUUAAUCGUUGUUGUUU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN13070_c2_g1_398_TPlot.pdf
TRINITY_DN13077_c0_g2:504	si_a359	TRINITY_DN13077_c0_g2	493	513	504	-29.20	-20.30	0.695205479452055	6	1-12,513-502;14-17,500-497;19-19,495-495	13-13,501-501[SIL];18-18,496-496[SIL];20-21,494-493[UP3]	..(.((((.((((((((((((&)))))))))))).)))).)..	GGGUUCCGUUCAAGAUAGAGU&AUUCUAUUUUGAUCGGAUCAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN13077_c0_g2_504_TPlot.pdf
TRINITY_DN13077_c0_g2:506	si_a357	TRINITY_DN13077_c0_g2	495	515	506	-28.80	-20.20	0.701388888888889	8	3-14,513-502;16-19,500-497	1-2,515-514[UP5];15-15,501-501[SIL];20-21,496-495[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	GUUCCGUUCAAGAUAGAGUAA&UAAUUCUAUUUUGAUCGGAUC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN13077_c0_g2_506_TPlot.pdf
TRINITY_DN13077_c0_g2:507	si_a356	TRINITY_DN13077_c0_g2	496	516	507	-26.90	-20.20	0.75092936802974	9	4-15,513-502;17-20,500-497	1-3,516-514[UP5];16-16,501-501[SIL];21-21,496-496[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	UUCCGUUCAAGAUAGAGUAAC&UUAAUUCUAUUUUGAUCGGAU	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN13077_c0_g2_507_TPlot.pdf
TRINITY_DN13077_c0_g2:509	si_a354	TRINITY_DN13077_c0_g2	498	518	509	-26.20	-18.00	0.687022900763359	11.5	6-17,513-502;19-21,500-498	1-5,518-514[UP5];18-18,501-501[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	CCGUUCAAGAUAGAGUAACGU&UAUUAAUUCUAUUUUGAUCGG	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN13077_c0_g2_509_TPlot.pdf
TRINITY_DN13081_c0_g1:146	si_s75	TRINITY_DN13081_c0_g1	132	155	146	-24.00	-15.70	0.654166666666667	12	3-17,153-139;18-20,135-133	1-2,155-154[UP5];x-x,138-136[BULt];21-21,132-132[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	CGAGUACGGGAAAGAAAGGGGAAC&UAUUUUUUUUCUUUCCU---UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13081_c0_g1_146_TPlot.pdf
TRINITY_DN13081_c0_g2:105	si_s77	TRINITY_DN13081_c0_g2	91	114	105	-25.50	-17.10	0.670588235294118	7	1-15,114-100;16-18,96-94;20-21,92-91	x-x,99-97[BULt];19-19,93-93[SIL]	((.(((...(((((((((((((((&)))))))))))))))---))).))	GACGAGCACGGGAAAGAAAAGGAA&UUUUUUUUCUUUCCU---UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN13081_c0_g2_105_TPlot.pdf
TRINITY_DN13081_c0_g2:106	si_s76	TRINITY_DN13081_c0_g2	94	115	106	-23.60	-16.50	0.699152542372881	6	2-16,114-100;18-18,98-98;19-21,96-94	1-1,115-115[UP5];17-17,99-99[SIL];x-x,97-97[BULt]	(((.(.(((((((((((((((.&.))))))))))))))).)-)))	GAGCACGGGAAAGAAAAGGAAA&AUUUUUUUUCUUUCCUUU-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13081_c0_g2_106_TPlot.pdf
TRINITY_DN13081_c0_g2:107	si_s75	TRINITY_DN13081_c0_g2	93	116	107	-24.00	-16.50	0.6875	10	3-17,114-100;18-20,96-94	1-2,116-115[UP5];x-x,99-97[BULt];21-21,93-93[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	CGAGCACGGGAAAGAAAAGGAAAC&UAUUUUUUUUCUUUCCU---UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13081_c0_g2_107_TPlot.pdf
TRINITY_DN13081_c0_g2:108	si_s74	TRINITY_DN13081_c0_g2	97	117	108	-25.00	-16.40	0.656	10.5	4-18,114-100	1-3,117-115[UP5];19-21,99-97[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACGGGAAAGAAAAGGAAACG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN13081_c0_g2_108_TPlot.pdf
TRINITY_DN13081_c0_g2:109	si_s73	TRINITY_DN13081_c0_g2	98	118	109	-24.00	-16.50	0.6875	8.5	1-2,118-117;5-19,114-100	3-4,116-115[SIL];20-21,99-98[UP3]	..(((((((((((((((..((&))..)))))))))))))))..	ACGGGAAAGAAAAGGAAACGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13081_c0_g2_109_TPlot.pdf
TRINITY_DN13081_c0_g2:110	si_s72	TRINITY_DN13081_c0_g2	99	119	110	-24.10	-16.60	0.688796680497925	8.5	2-3,118-117;6-20,114-100	1-1,119-119[UP5];4-5,116-115[SIL];21-21,99-99[UP3]	.(((((((((((((((..((.&.))..))))))))))))))).	CGGGAAAGAAAAGGAAACGAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13081_c0_g2_110_TPlot.pdf
TRINITY_DN13088_c0_g1:480	si_a430	TRINITY_DN13088_c0_g1	467	489	480	-33.70	-22.40	0.664688427299703	6	1-12,489-478;13-16,476-473;17-20,471-468	x-x,477-477[BULt];x-x,472-472[BULt];21-21,467-467[UP3]	.((((.((((.((((((((((((&))))))))))))-))))-)))).	AAUGUACCAGUCGGAUCUUAUAU&AUAUAGGAUCCG-UUGG-AUAUG	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN13088_c0_g1_480_TPlot.pdf
TRINITY_DN13088_c0_g1:914	si_s68	TRINITY_DN13088_c0_g1	903	923	914	-23.10	-15.10	0.653679653679654	10	5-19,919-905	1-4,923-920[UP5];20-21,904-903[UP3]	..(((((((((((((((....&....)))))))))))))))..	CUAGAAAAAGAAUAGAAAAAU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13088_c0_g1_914_TPlot.pdf
TRINITY_DN1308_c0_g1:2003	si_a504	TRINITY_DN1308_c0_g1	1990	2012	2003	-32.90	-22.20	0.674772036474164	10	1-12,2012-2001;13-17,1998-1994;20-21,1991-1990	x-x,2000-1999[BULt];18-19,1993-1992[SIL]	((..(((((..((((((((((((&))))))))))))--)))))..))	GCCCUCCAGGCGGAGGACGGAGA&UUUUCGUCUUCC--UUGGAAUGU	3	0.999916707456954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN1308_c0_g1_2003_TPlot.pdf
TRINITY_DN1308_c0_g1:2006	si_a501	TRINITY_DN1308_c0_g1	1993	2016	2006	-33.50	-24.40	0.728358208955224	8.5	1-8,2016-2009;9-15,2007-2001;16-20,1998-1994	x-x,2008-2008[BULt];x-x,2000-1999[BULt];21-21,1993-1993[UP3]	.(((((..(((((((.((((((((&))))))))-)))))))--))))).	CUCCAGGCGGAGGACGGAGAGACG&CGUUUUUC-GUCUUCC--UUGGAA	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN1308_c0_g1_2006_TPlot.pdf
TRINITY_DN1308_c0_g1:2013	si_a495	TRINITY_DN1308_c0_g1	2001	2022	2013	-31.90	-22.10	0.692789968652038	8.5	3-5,2020-2018;7-14,2016-2009;15-21,2007-2001	1-2,2022-2021[UP5];6-6,2017-2017[SIL];x-x,2008-2008[BULt]	(((((((.((((((((.(((..&..))).))))))))-)))))))	GGAGGACGGAGAGACGCCAUCA&AUAUGUCGUUUUUC-GUCUUCC	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1308_c0_g1_2013_TPlot.pdf
TRINITY_DN1308_c0_g1:2059	si_s76	TRINITY_DN1308_c0_g1	2048	2068	2059	-23.60	-17.00	0.720338983050847	16	7-19,2062-2050	1-6,2068-2063[UP5];20-21,2049-2048[UP3]	..(((((((((((((......&......)))))))))))))..	CCGAGAGGGAGGAGACGGUGC&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1308_c0_g1_2059_TPlot.pdf
TRINITY_DN1308_c0_g1:2060	si_s75	TRINITY_DN1308_c0_g1	2049	2069	2060	-24.00	-17.00	0.708333333333333	17	8-20,2062-2050	1-7,2069-2063[UP5];21-21,2049-2049[UP3]	.(((((((((((((.......&.......))))))))))))).	CGAGAGGGAGGAGACGGUGCC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1308_c0_g1_2060_TPlot.pdf
TRINITY_DN1308_c0_g1:2061	si_s74	TRINITY_DN1308_c0_g1	2050	2070	2061	-25.00	-16.70	0.668	17.5	9-21,2062-2050	1-8,2070-2063[UP5]	(((((((((((((........&........)))))))))))))	GAGAGGGAGGAGACGGUGCCC&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1308_c0_g1_2061_TPlot.pdf
TRINITY_DN1308_c0_g1:2208	si_a628	TRINITY_DN1308_c0_g1	2197	2217	2208	-27.10	-19.30	0.712177121771218	10	1-4,2217-2214;6-19,2212-2199	5-5,2213-2213[SIL];20-21,2198-2197[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GCAGAGAUCGAUGUGGAGCGC&GCGUAUUAUGUCGAUUUUUUU	2	0.936110413218895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN1308_c0_g1_2208_TPlot.pdf
TRINITY_DN1308_c0_g1:2209	si_a627	TRINITY_DN1308_c0_g1	2198	2218	2209	-29.50	-23.20	0.786440677966102	9	1-5,2218-2214;7-20,2212-2199	6-6,2213-2213[SIL];21-21,2198-2198[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CAGAGAUCGAUGUGGAGCGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN1308_c0_g1_2209_TPlot.pdf
TRINITY_DN1308_c0_g1:2210	si_a626	TRINITY_DN1308_c0_g1	2199	2219	2210	-30.20	-23.30	0.771523178807947	9	2-6,2218-2214;8-21,2212-2199	1-1,2219-2219[UP5];7-7,2213-2213[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	AGAGAUCGAUGUGGAGCGCCA&AGGCGUAUUAUGUCGAUUUUU	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN1308_c0_g1_2210_TPlot.pdf
TRINITY_DN1308_c0_g1:2211	si_a625	TRINITY_DN1308_c0_g1	2200	2220	2211	-30.60	-22.60	0.738562091503268	10.5	3-7,2218-2214;9-21,2212-2200	1-2,2220-2219[UP5];8-8,2213-2213[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGAUCGAUGUGGAGCGCCAG&UAGGCGUAUUAUGUCGAUUUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN1308_c0_g1_2211_TPlot.pdf
TRINITY_DN1308_c0_g1:2212	si_a624	TRINITY_DN1308_c0_g1	2201	2221	2212	-32.30	-21.50	0.665634674922601	11.5	4-8,2218-2214;10-21,2212-2201	1-3,2221-2219[UP5];9-9,2213-2213[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGAUCGAUGUGGAGCGCCAGU&CUAGGCGUAUUAUGUCGAUUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN1308_c0_g1_2212_TPlot.pdf
TRINITY_DN1308_c0_g1:2213	si_a623	TRINITY_DN1308_c0_g1	2202	2221	2213	-33.10	-22.10	0.667673716012085	8.5	1-3,2221-2219;5-9,2218-2214;11-21,2212-2202	4-4,x-x[BULq];10-10,2213-2213[SIL]	(((((((((((.(((((-(((&))).))))).)))))))))))	GAUCGAUGUGGAGCGCC-AGU&ACUAGGCGUAUUAUGUCGAUU	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN1308_c0_g1_2213_TPlot.pdf
TRINITY_DN1308_c0_g1:2214	si_a622	TRINITY_DN1308_c0_g1	2203	2225	2214	-35.10	-23.50	0.66951566951567	10.5	1-5,2225-2221;6-10,2218-2214;12-21,2212-2203	x-x,2220-2219[BULt];11-11,2213-2213[SIL]	((((((((((.(((((..(((((&)))))--))))).))))))))))	AUCGAUGUGGAGCGCCAGUGGUC&GACUA--GGCGUAUUAUGUCGAU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN1308_c0_g1_2214_TPlot.pdf
TRINITY_DN1308_c0_g1:2254	si_a758	TRINITY_DN1308_c0_g1	2243	2263	2254	-34.00	-22.10	0.65	9.5	1-8,2263-2256;11-18,2253-2246	9-10,2255-2254[SIL];19-21,2245-2243[UP3]	...((((((((..((((((((&))))))))..))))))))...	GUUUCGAGGACAAAGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	2	0.999995601000782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1308_c0_g1_2254_TPlot.pdf
TRINITY_DN1308_c0_g1:2255	si_a757	TRINITY_DN1308_c0_g1	2244	2264	2255	-33.10	-22.10	0.667673716012085	9.5	2-9,2263-2256;12-19,2253-2246	1-1,2264-2264[UP5];10-11,2255-2254[SIL];20-21,2245-2244[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	UUUCGAGGACAAAGAGGAGGA&ACCUCCUUUGGGUUUUUGAUU	2	0.999960673473756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1308_c0_g1_2255_TPlot.pdf
TRINITY_DN1308_c0_g1:2256	si_a756	TRINITY_DN1308_c0_g1	2245	2265	2256	-33.10	-22.10	0.667673716012085	10.5	3-10,2263-2256;13-20,2253-2246	1-2,2265-2264[UP5];11-12,2255-2254[SIL];21-21,2245-2245[UP3]	.((((((((..((((((((..&..))))))))..)))))))).	UUCGAGGACAAAGAGGAGGAG&AACCUCCUUUGGGUUUUUGAU	2	0.999964840884371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1308_c0_g1_2256_TPlot.pdf
TRINITY_DN1308_c0_g1:2267	si_s84	TRINITY_DN1308_c0_g1	2256	2276	2267	-32.30	-23.80	0.736842105263158	7	1-6,2276-2271;8-20,2269-2257	7-7,2270-2270[SIL];21-21,2256-2256[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	AGAGGAGGAGGAAGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1308_c0_g1_2267_TPlot.pdf
TRINITY_DN1308_c0_g1:2268	si_s82	TRINITY_DN1308_c0_g1	2257	2278	2268	-28.90	-23.70	0.820069204152249	7.5	2-8,2277-2271;9-21,2269-2257	1-1,2278-2278[UP5];x-x,2270-2270[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	GAGGAGGAGGAAGAGGAAGAGG&UUUCUUUC-CUUUCUUCUUCUU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1308_c0_g1_2268_TPlot.pdf
TRINITY_DN1308_c0_g1:2269	si_s81	TRINITY_DN1308_c0_g1	2258	2279	2269	-28.90	-24.20	0.837370242214533	6.5	1-9,2279-2271;10-21,2269-2258	x-x,2270-2270[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	AGGAGGAGGAAGAGGAAGAGGA&UUUUCUUUC-CUUUCUUCUUCU	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1308_c0_g1_2269_TPlot.pdf
TRINITY_DN1308_c0_g1:2270	si_s87	TRINITY_DN1308_c0_g1	2260	2280	2270	-32.90	-23.60	0.717325227963526	6.5	1-7,2280-2274;8-17,2272-2263;19-21,2262-2260	x-x,2273-2273[BULt];18-18,x-x[BULq]	(((-((((((((((.(((((((&)))))))-)))))))))).)))	GAG-GAGGAAGAGGAAGAGGAG&UUCCUUU-CUUCUUCUUCGCUU	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1308_c0_g1_2270_TPlot.pdf
TRINITY_DN1308_c0_g1:2271	si_s80	TRINITY_DN1308_c0_g1	2259	2280	2271	-28.20	-23.30	0.826241134751773	7	1-10,2280-2271;11-21,2269-2259	x-x,2270-2270[BULt]	(((((((((((.((((((((((&))))))))))-)))))))))))	GGAGGAGGAAGAGGAAGAGGAG&UUUUUCUUUC-CUUUCUUCUUC	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1308_c0_g1_2271_TPlot.pdf
TRINITY_DN1308_c0_g1:2272	si_s88	TRINITY_DN1308_c0_g1	2262	2282	2272	-34.80	-25.60	0.735632183908046	5.5	1-5,2282-2278;6-16,2276-2266;18-21,2265-2262	x-x,2277-2277[BULt];17-17,x-x[BULq]	((((-(((((((((((.(((((&)))))-))))))))))).))))	GGAG-GAAGAGGAAGAGGAGGA&UCCUU-UCUUCUUCUUCGCUUC	2	0.990365583261362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1308_c0_g1_2272_TPlot.pdf
TRINITY_DN1308_c0_g1:2273	si_s78	TRINITY_DN1308_c0_g1	2261	2282	2273	-26.20	-21.50	0.820610687022901	8	1-12,2282-2271;13-21,2269-2261	x-x,2270-2270[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	AGGAGGAAGAGGAAGAGGAGGA&UUUUUUUCUUUC-CUUUCUUCU	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1308_c0_g1_2273_TPlot.pdf
TRINITY_DN1308_c0_g1:2274	si_s77	TRINITY_DN1308_c0_g1	2262	2283	2274	-25.50	-20.30	0.796078431372549	8	2-13,2282-2271;14-21,2269-2262	1-1,2283-2283[UP5];x-x,2270-2270[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	GGAGGAAGAGGAAGAGGAGGAC&UUUUUUUUCUUUC-CUUUCUUC	2	0.999673723702483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1308_c0_g1_2274_TPlot.pdf
TRINITY_DN1308_c0_g1:2279	si_a774	TRINITY_DN1308_c0_g1	2268	2289	2279	-29.20	-19.10	0.654109589041096	11.5	1-6,2289-2284;7-9,2282-2280;12-18,2277-2271	x-x,2283-2283[BULt];10-11,2279-2278[SIL];19-21,2270-2268[UP3]	...(((((((..(((.((((((&))))))-)))..)))))))...	AGAGGAAGAGGAGGACUCAGUC&GAUUGA-UUCAACUCUUCUAUU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN1308_c0_g1_2279_TPlot.pdf
TRINITY_DN1308_c0_g1:2281	si_a772	TRINITY_DN1308_c0_g1	2270	2291	2281	-29.80	-20.50	0.687919463087248	9.5	1-8,2291-2284;9-11,2282-2280;14-20,2277-2271	x-x,2283-2283[BULt];12-13,2279-2278[SIL];21-21,2270-2270[UP3]	.(((((((..(((.((((((((&))))))))-)))..))))))).	AGGAAGAGGAGGACUCAGUCGA&UUGAUUGA-UUCAACUCUUCUA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN1308_c0_g1_2281_TPlot.pdf
TRINITY_DN1308_c0_g1:2282	si_a771	TRINITY_DN1308_c0_g1	2271	2292	2282	-29.40	-20.10	0.683673469387755	8.5	2-9,2291-2284;10-12,2282-2280;15-21,2277-2271	1-1,2292-2292[UP5];x-x,2283-2283[BULt];13-14,2279-2278[SIL]	(((((((..(((.((((((((.&.))))))))-)))..)))))))	GGAAGAGGAGGACUCAGUCGAC&UUUGAUUGA-UUCAACUCUUCU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN1308_c0_g1_2282_TPlot.pdf
TRINITY_DN1308_c0_g1:2286	si_a56	TRINITY_DN1308_c0_g1	2270	2295	2286	-38.90	-26.80	0.688946015424165	14	1-10,2295-2286;11-11,2280-2280;13-20,2278-2271	x-x,2285-2281[BULt];12-12,2279-2279[SIL];21-21,2270-2270[UP3]	.((((((((.(.....((((((((((&))))))))))-----).)))))))).	AGGAAGAGGAGGACUCAGUCGACUCC&GGAGUCGACU-----CGCUUCUUUCA	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN1308_c0_g1_2286_TPlot.pdf
TRINITY_DN1308_c0_g1:2287	si_a55	TRINITY_DN1308_c0_g1	2271	2296	2287	-38.90	-26.40	0.67866323907455	13	2-11,2295-2286;12-12,2280-2280;14-21,2278-2271	1-1,2296-2296[UP5];x-x,2285-2281[BULt];13-13,2279-2279[SIL]	((((((((.(.....((((((((((.&.))))))))))-----).))))))))	GGAAGAGGAGGACUCAGUCGACUCCA&AGGAGUCGACU-----CGCUUCUUUC	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN1308_c0_g1_2287_TPlot.pdf
TRINITY_DN1308_c0_g1:680	si_s796	TRINITY_DN1308_c0_g1	667	689	680	-30.30	-19.90	0.656765676567657	8.5	1-8,689-682;10-14,680-676;15-21,673-667	9-9,681-681[SIL];x-x,675-674[BULt]	(((((((..(((((.((((((((&)))))))).)))))--)))))))	AGCGAGGGCGUGGAUUACGAGUU&AGCUCGUAUUUUAU--CUUCGUU	4	0.999999917251805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN1308_c0_g1_680_TPlot.pdf
TRINITY_DN13096_c0_g1:782	si_s558	TRINITY_DN13096_c0_g1	771	793	782	-28.20	-19.80	0.702127659574468	8.5	1-5,793-789;6-19,786-773	x-x,788-787[BULt];20-21,772-771[UP3]	..((((((((((((((..(((((&)))))--))))))))))))))..	ACGUUCCGAAAAUAUUUGGGUUC&GAAUU--AAUAUUUUCGGGACAA	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN13096_c0_g1_782_TPlot.pdf
TRINITY_DN13099_c2_g1:84	si_a817	TRINITY_DN13099_c2_g1	74	93	84	-30.90	-20.60	0.666666666666667	4.5	1-11,93-83;13-17,81-77;19-20,76-75	12-12,82-82[SIL];18-18,x-x[BULq];21-21,74-74[UP3]	.((-(((((.(((((((((((&))))))))))).))))).)).	AUC-UUCUUCUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN13099_c2_g1_84_TPlot.pdf
TRINITY_DN1309_c0_g1:77	si_s210	TRINITY_DN1309_c0_g1	65	85	77	-35.90	-24.50	0.682451253481894	8.5	3-9,83-77;11-19,76-68;20-21,66-65	1-2,85-84[UP5];10-10,x-x[BULq];x-x,67-67[BULt]	((.(((((((((-(((((((..&..))))))).)))))))))-))	UGAGUUUCGAGC-CAGCUGGAA&UACCAGUUGUGUUCGAAAC-CG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN1309_c0_g1_77_TPlot.pdf
TRINITY_DN1309_c0_g1:78	si_s208	TRINITY_DN1309_c0_g1	68	87	78	-34.50	-24.90	0.721739130434783	6.5	1-3,87-85;5-11,83-77;13-21,76-68	4-4,84-84[SIL];12-12,x-x[BULq]	(((((((((-(((((((.(((&))).))))))).)))))))))	GUUUCGAGC-CAGCUGGAAUA&UGUACCAGUUGUGUUCGAAAC	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN1309_c0_g1_78_TPlot.pdf
TRINITY_DN1309_c0_g1:79	si_s207	TRINITY_DN1309_c0_g1	69	88	79	-33.00	-21.80	0.660606060606061	6.5	2-4,87-85;6-12,83-77;14-21,76-69	1-1,88-88[UP5];5-5,84-84[SIL];13-13,x-x[BULq]	((((((((-(((((((.(((.&.))).))))))).))))))))	UUUCGAGC-CAGCUGGAAUAA&AUGUACCAGUUGUGUUCGAAA	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN1309_c0_g1_79_TPlot.pdf
TRINITY_DN130_c1_g3:3685	si_a884	TRINITY_DN130_c1_g3	3674	3697	3685	-25.60	-16.72	0.653125	13.5	3-9,3695-3689;12-21,3683-3674	1-2,3697-3696[UP5];10-11,3688-3684[AILt]	((((((((((.....(((((((..&..)))))))---..))))))))))	UUAUUACUGUUUGAAUGAUUGCUA&UUGCAAUCA---AUAUAGUAAUAA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN130_c1_g3_3685_TPlot.pdf
TRINITY_DN130_c1_g5:875	si_a412	TRINITY_DN130_c1_g5	864	884	875	-18.30	-14.00	0.765027322404372	7	2-4,883-881;7-20,878-865	1-1,884-884[UP5];5-6,880-879[SIL];21-21,864-864[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	GGUUUGUUUAAAUAUUUACAU&UUGUUUAUAUUUAAAUAAAUA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN130_c1_g5_875_TPlot.pdf
TRINITY_DN130_c1_g5:877	si_a410	TRINITY_DN130_c1_g5	866	886	877	-17.80	-12.10	0.679775280898876	9.5	4-6,883-881;9-21,878-866	1-3,886-884[UP5];7-8,880-879[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	UUUGUUUAAAUAUUUACAUAG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999863352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN130_c1_g5_877_TPlot.pdf
TRINITY_DN13101_c0_g1:1237	si_s62	TRINITY_DN13101_c0_g1	1224	1246	1237	-26.50	-18.08	0.682264150943396	10.5	2-11,1245-1236;14-21,1231-1224	1-1,1246-1246[UP5];12-13,1235-1232[AILt]	((((((((....((((((((((.&.))))))))))--..))))))))	GAAAAAUAAAAUGGUUGCUGACA&AGUUAGCAACU--UCUAUUUUUU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN13101_c0_g1_1237_TPlot.pdf
TRINITY_DN13101_c0_g2:348	si_s552	TRINITY_DN13101_c0_g2	337	357	348	-21.10	-14.00	0.663507109004739	12	5-11,353-347;14-21,344-337	1-4,357-354[UP5];12-13,346-345[SIL]	((((((((..(((((((....&....)))))))..))))))))	CGGAGAUAGCAGUUCUAAGAU&AAAAUAGAAUUAAUAUUUUCG	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN13101_c0_g2_348_TPlot.pdf
TRINITY_DN13102_c0_g1:406	si_s46	TRINITY_DN13102_c0_g1	395	415	406	-25.00	-16.90	0.676	7	1-9,415-407;11-16,405-400;18-20,398-396	10-10,406-406[SIL];17-17,399-399[SIL];21-21,395-395[UP3]	.(((.((((((.(((((((((&))))))))).)))))).))).	AGACAUGAAGUGCAAUUGUUG&UAAUAAUUGGAUUUCAAGUUA	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN13102_c0_g1_406_TPlot.pdf
TRINITY_DN13102_c0_g1:563	si_s465	TRINITY_DN13102_c0_g1	552	572	563	-36.10	-24.20	0.670360110803324	7.5	3-13,570-560;15-20,558-553	1-2,572-571[UP5];14-14,559-559[SIL];21-21,552-552[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	AGAUCUGGUGGGUAUGGGAAC&UAUCUCAUAUCCAACGGAUCC	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s465_TRINITY_DN13102_c0_g1_563_TPlot.pdf
TRINITY_DN13102_c0_g1:565	si_s463	TRINITY_DN13102_c0_g1	554	574	565	-31.90	-21.00	0.658307210031348	10.5	5-15,570-560;17-21,558-554	1-4,574-571[UP5];16-16,559-559[SIL]	(((((.(((((((((((....&....))))))))))).)))))	AUCUGGUGGGUAUGGGAACUG&AUUAUCUCAUAUCCAACGGAU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN13102_c0_g1_565_TPlot.pdf
TRINITY_DN13102_c0_g2:356	si_a350	TRINITY_DN13102_c0_g2	345	365	356	-20.30	-13.30	0.655172413793103	9	4-10,362-356;12-21,354-345	1-3,365-363[UP5];11-11,355-355[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUAGGAUGGAUUUAAUAUAGG&AAAAUAUUAAUUCUAUUUUGA	3	0.999996313032064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN13102_c0_g2_356_TPlot.pdf
TRINITY_DN13107_c0_g1:75	si_a635	TRINITY_DN13107_c0_g1	64	84	75	-26.10	-19.50	0.747126436781609	7.5	2-14,83-71;17-21,68-64	1-1,84-84[UP5];15-16,70-69[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	GUUGCAAGAGGAAGUCGACAG&AUGUCGAUUUUUUUGAGUAAU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN13107_c0_g1_75_TPlot.pdf
TRINITY_DN13110_c0_g1:1810	si_a464	TRINITY_DN13110_c0_g1	1799	1819	1810	-19.60	-15.40	0.785714285714286	6.5	1-13,1819-1807;16-21,1804-1799	14-15,1806-1805[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	AAUAGUCUCGUGUUAUGUGUA&UAUAUAUAAUAUGUAAUUAUU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN13110_c0_g1_1810_TPlot.pdf
TRINITY_DN13110_c2_g1:139	si_s239	TRINITY_DN13110_c2_g1	128	155	139	-35.80	-23.80	0.664804469273743	20.5	2-6,154-150;7-9,141-139;11-21,138-128	1-1,155-155[UP5];x-x,149-142[BULt];10-10,x-x[BULq]	(((((((((((-(((........(((((.&.)))))--------))).)))))))))))	GGGAGAUGCCU-UUGCAAUUUGUGUUCCA&AGGAAU--------CAAUAGGCAUUUCCC	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s239_TRINITY_DN13110_c2_g1_139_TPlot.pdf
TRINITY_DN13117_c0_g1:225	si_a24	TRINITY_DN13117_c0_g1	214	235	225	-24.20	-15.80	0.652892561983471	7.5	2-6,234-230;7-19,228-216	1-1,235-235[UP5];x-x,229-229[BULt];20-21,215-214[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	UGCUUAGGACUAAAAGGUAAGG&AUUUAU-UUUUAGUUCUAAGAC	4	0.999995269886044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN13117_c0_g1_225_TPlot.pdf
TRINITY_DN13117_c0_g2:142	si_a702	TRINITY_DN13117_c0_g2	130	151	142	-30.80	-21.00	0.681818181818182	6	2-14,150-138;15-19,136-132	1-1,151-151[UP5];x-x,137-137[BULt];20-21,131-130[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	GUUUUUGUGAGUGUAUCAGUUA&CAACUGGUACAUUC-CAAAAUA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN13117_c0_g2_142_TPlot.pdf
TRINITY_DN13117_c0_g2:304	si_a23	TRINITY_DN13117_c0_g2	293	314	304	-22.80	-15.50	0.679824561403509	9	3-7,312-308;8-20,306-294	1-2,314-313[UP5];x-x,307-307[BULt];21-21,293-293[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	GCUUGGGACUAAAAGGUAAGGU&UAUUUAU-UUUUAGUUCUAAGA	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN13117_c0_g2_304_TPlot.pdf
TRINITY_DN13117_c0_g2:527	si_s812	TRINITY_DN13117_c0_g2	515	537	527	-26.40	-17.30	0.65530303030303	7.5	1-6,537-532;7-15,530-522;16-21,520-515	x-x,531-531[BULt];x-x,521-521[BULt]	((((((.(((((((((.((((((&))))))-)))))))))-))))))	AUUAUUAAAGAGAGGGAUGAUGG&UCGUUA-CCUUUUCUU-AAUAAU	3	0.99999919223585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN13117_c0_g2_527_TPlot.pdf
TRINITY_DN13117_c0_g2:537	si_a180	TRINITY_DN13117_c0_g2	527	546	537	-32.10	-21.30	0.663551401869159	6	1-9,546-538;11-14,536-533;17-21,531-527	10-10,537-537[SIL];15-16,532-532[AILq]	(((((.-((((.(((((((((&))))))))).))))..)))))	AGGGAU-GAUGGUAUUUAGAC&GUCUAGAUAAUAUCUUUCCCU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN13117_c0_g2_537_TPlot.pdf
TRINITY_DN13117_c0_g2:538	si_a179	TRINITY_DN13117_c0_g2	528	547	538	-32.90	-22.10	0.671732522796353	6	1-10,547-538;12-15,536-533;18-21,531-528	11-11,537-537[SIL];16-17,532-532[AILq]	((((.-((((.((((((((((&)))))))))).))))..))))	GGGAU-GAUGGUAUUUAGACG&CGUCUAGAUAAUAUCUUUCCC	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN13117_c0_g2_538_TPlot.pdf
TRINITY_DN13125_c0_g1:1264	si_a476	TRINITY_DN13125_c0_g1	1253	1273	1264	-22.90	-15.40	0.672489082969432	8	1-11,1273-1263;14-19,1260-1255	12-13,1262-1261[SIL];20-21,1254-1253[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	UGUUUGUAGUGCAAUAGUUAC&GUAAUUAUUGUUAUAUAGAAU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN13125_c0_g1_1264_TPlot.pdf
TRINITY_DN13125_c0_g1:1678	si_a641	TRINITY_DN13125_c0_g1	1667	1688	1678	-23.60	-16.40	0.694915254237288	6.5	1-8,1688-1681;9-19,1679-1669	x-x,1680-1680[BULt];20-21,1668-1667[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	UAGUGUGUUACUCUAAAGAAAU&AUUUUUUU-GAGUAAUAUAUCG	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN13125_c0_g1_1678_TPlot.pdf
TRINITY_DN13125_c0_g1:1679	si_a640	TRINITY_DN13125_c0_g1	1668	1689	1679	-24.10	-16.70	0.692946058091286	6.5	2-9,1688-1681;10-20,1679-1669	1-1,1689-1689[UP5];x-x,1680-1680[BULt];21-21,1668-1668[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	AGUGUGUUACUCUAAAGAAAUA&GAUUUUUUU-GAGUAAUAUAUC	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN13125_c0_g1_1679_TPlot.pdf
TRINITY_DN13125_c0_g1:1681	si_a639	TRINITY_DN13125_c0_g1	1669	1690	1681	-23.60	-16.50	0.699152542372881	7.5	3-10,1688-1681;11-21,1679-1669	1-2,1690-1689[UP5];x-x,1680-1680[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GUGUGUUACUCUAAAGAAAUAA&CGAUUUUUUU-GAGUAAUAUAU	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN13125_c0_g1_1681_TPlot.pdf
TRINITY_DN13125_c0_g1:645	si_a409	TRINITY_DN13125_c0_g1	634	654	645	-19.50	-12.80	0.656410256410256	8	1-8,654-647;10-16,645-639	9-9,646-646[SIL];17-21,638-634[UP3]	.....(((((((.((((((((&)))))))).))))))).....	CUACGUAAAUAUUGACAAAAC&GUUUUGUUUAUAUUUAAAUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN13125_c0_g1_645_TPlot.pdf
TRINITY_DN13125_c0_g1:647	si_a407	TRINITY_DN13125_c0_g1	636	656	647	-19.80	-14.50	0.732323232323232	6	1-10,656-647;12-18,645-639	11-11,646-646[SIL];19-21,638-636[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	ACGUAAAUAUUGACAAAACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.998764189281505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN13125_c0_g1_647_TPlot.pdf
TRINITY_DN13126_c0_g1:676	si_a783	TRINITY_DN13126_c0_g1	658	685	676	-24.70	-17.00	0.688259109311741	12	3-14,683-672;15-21,664-658	1-2,685-684[UP5];x-x,671-665[BULt]	(((((((.......((((((((((((..&..))))))))))))-------)))))))	AAAUGGAUCAACAAGAAAUGGAAGAGAA&AACUCUUCUAUUUU-------UCUAUUU	4	0.999999999875884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN13126_c0_g1_676_TPlot.pdf
TRINITY_DN13126_c0_g2:498	si_s796	TRINITY_DN13126_c0_g2	486	510	498	-30.30	-19.70	0.65016501650165	12	2-9,509-502;10-13,498-495;14-19,493-488	1-1,510-510[UP5];x-x,501-499[BULt];x-x,494-494[BULt];20-21,487-486[UP3]	..((((((.((((...((((((((.&.))))))))---))))-))))))..	CUCGAAGAGUAAAGACGUGCGAGCA&AGCUCGUAU---UUUA-UCUUCGUU	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN13126_c0_g2_498_TPlot.pdf
TRINITY_DN13126_c0_g2:502	si_s795	TRINITY_DN13126_c0_g2	487	511	502	-30.30	-19.70	0.65016501650165	13	3-10,509-502;11-14,498-495;15-20,493-488	1-2,511-510[UP5];x-x,501-499[BULt];x-x,494-494[BULt];21-21,487-487[UP3]	.((((((.((((...((((((((..&..))))))))---))))-)))))).	UCGAAGAGUAAAGACGUGCGAGCAU&AAGCUCGUAU---UUUA-UCUUCGU	4	0.999999663202245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN13126_c0_g2_502_TPlot.pdf
TRINITY_DN13135_c0_g1:31	si_a668	TRINITY_DN13135_c0_g1	19	37	31	-33.20	-21.80	0.656626506024096	11.5	1-4,37-34;8-12,33-29;13-21,27-19	5-7,x-x[BULq];x-x,28-28[BULt]	(((((((((.(((((---((((&))))...)))))-)))))))))	GUGAAUGAGAGGGUC---GGGC&GCCUAUUGAUUC-CUUAUUCAC	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN13135_c0_g1_31_TPlot.pdf
TRINITY_DN13135_c0_g1:365	si_s169	TRINITY_DN13135_c0_g1	351	375	365	-44.00	-30.50	0.693181818181818	10.5	1-7,375-369;8-10,367-365;11-13,361-359;15-21,357-351	x-x,368-368[BULt];x-x,364-362[BULt];14-14,358-358[SIL]	(((((((.(((...(((.(((((((&)))))))-)))---))).)))))))	UCGGGUAACUUAAGUGCUCCCUGGC&GCCAGGG-GUA---AAGAUGCCCGA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s169_TRINITY_DN13135_c0_g1_365_TPlot.pdf
TRINITY_DN13135_c0_g1:686	si_a750	TRINITY_DN13135_c0_g1	675	695	686	-39.70	-27.60	0.695214105793451	6	1-8,695-688;10-15,686-681;17-21,679-675	9-9,687-687[SIL];16-16,680-680[SIL]	(((((.((((((.((((((((&)))))))).)))))).)))))	AACCCUGAGGGGAUUCGUGGU&GCCAUGAACCUCCUUUGGGUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN13135_c0_g1_686_TPlot.pdf
TRINITY_DN13135_c0_g1:688	si_a748	TRINITY_DN13135_c0_g1	677	697	688	-42.00	-28.30	0.673809523809524	7	2-10,696-688;12-17,686-681;19-21,679-677	1-1,697-697[UP5];11-11,687-687[SIL];18-18,680-680[SIL]	(((.((((((.(((((((((.&.))))))))).)))))).)))	CCCUGAGGGGAUUCGUGGUCU&UGGCCAUGAACCUCCUUUGGG	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a748_TRINITY_DN13135_c0_g1_688_TPlot.pdf
TRINITY_DN1313_c0_g1:1069	si_s88	TRINITY_DN1313_c0_g1	1051	1079	1069	-34.80	-23.50	0.675287356321839	11.5	1-5,1079-1075;6-13,1073-1066;14-21,1058-1051	x-x,1074-1074[BULt];x-x,1065-1059[BULt]	((((((((.......((((((((.(((((&)))))-))))))))-------))))))))	GAAGCGGAUGCAAGUGGGGAAGACAAGGA&UCCUU-UCUUCUUC-------UUCGCUUC	4	0.999999999999519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1313_c0_g1_1069_TPlot.pdf
TRINITY_DN1313_c0_g1:1828	si_a781	TRINITY_DN1313_c0_g1	1817	1837	1828	-27.40	-18.50	0.675182481751825	5.5	1-8,1837-1830;10-10,1828-1828;12-20,1826-1818	9-9,1829-1829[SIL];11-11,1827-1827[SIL];21-21,1817-1817[UP3]	.(((((((((.(.((((((((&)))))))).).))))))))).	UUGGAAAAAUUGUAGAGUUGA&UCAACUCUUCUAUUUUUCUAU	4	0.999962730131049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN1313_c0_g1_1828_TPlot.pdf
TRINITY_DN1313_c0_g1:1830	si_a779	TRINITY_DN1313_c0_g1	1819	1839	1830	-27.00	-18.10	0.67037037037037	4.5	2-10,1838-1830;12-12,1828-1828;14-21,1826-1819	1-1,1839-1839[UP5];11-11,1829-1829[SIL];13-13,1827-1827[SIL]	((((((((.(.(((((((((.&.))))))))).).))))))))	GGAAAAAUUGUAGAGUUGAAG&AUUCAACUCUUCUAUUUUUCU	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1313_c0_g1_1830_TPlot.pdf
TRINITY_DN13140_c0_g1:3087	si_a677	TRINITY_DN13140_c0_g1	3076	3096	3087	-35.40	-24.50	0.692090395480226	5.5	2-12,3095-3085;14-15,3083-3082;17-21,3080-3076	1-1,3096-3096[UP5];13-13,3084-3084[SIL];16-16,3081-3081[SIL]	(((((.((.(((((((((((.&.))))))))))).)).)))))	UGGAAGUGGGUGAAUGAGGAU&UUCCUUAUUCACGCGGUUUCG	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN13140_c0_g1_3087_TPlot.pdf
TRINITY_DN13145_c0_g2:1085	si_a318	TRINITY_DN13145_c0_g2	1075	1094	1085	-22.50	-14.82	0.658666666666667	7.5	1-12,1094-1083;17-21,1079-1075	13-16,1082-1080[AILq]	(((((...-((((((((((((&))))))))))))....)))))	GUAGGUGU-UCAUGGGUAGAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN13145_c0_g2_1085_TPlot.pdf
TRINITY_DN13150_c0_g1:478	si_s602	TRINITY_DN13150_c0_g1	467	490	478	-28.10	-18.64	0.663345195729537	11	1-6,490-485;8-19,480-469	7-7,484-481[AILt];20-21,468-467[UP3]	..((((((((((((....((((((&))))))---.))))))))))))..	UCUAGAGAAGAUUCAAUACUUGGA&UCCAAG---CGAAUCUUUUUUAAA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN13150_c0_g1_478_TPlot.pdf
TRINITY_DN13150_c0_g2:125	si_s583	TRINITY_DN13150_c0_g2	108	134	125	-24.30	-15.90	0.654320987654321	13	5-15,130-120;16-21,113-108	1-4,134-131[UP5];x-x,119-114[BULt]	((((((......(((((((((((....&....)))))))))))------))))))	GAUUUAGACCCAUCCAUGAUUUUGGAU&UAAAAAAAUCAUGGA------UAAAUC	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s583_TRINITY_DN13150_c0_g2_125_TPlot.pdf
TRINITY_DN13150_c0_g2:126	si_s582	TRINITY_DN13150_c0_g2	115	135	126	-22.50	-15.10	0.671111111111111	13	6-17,130-119	1-5,135-131[UP5];18-21,118-115[UP3]	....((((((((((((.....&.....))))))))))))....	ACCCAUCCAUGAUUUUGGAUA&AUAAAAAAAUCAUGGAUAAAU	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN13150_c0_g2_126_TPlot.pdf
TRINITY_DN13150_c0_g2:336	si_s73	TRINITY_DN13150_c0_g2	325	345	336	-24.00	-16.00	0.666666666666667	8.5	1-16,345-330	17-21,329-325[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAACGAAGAGAGGAAAUAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13150_c0_g2_336_TPlot.pdf
TRINITY_DN13150_c0_g2:337	si_s72	TRINITY_DN13150_c0_g2	326	346	337	-24.10	-16.90	0.701244813278008	7.5	1-17,346-330	18-21,329-326[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAACGAAGAGAGGAAAUAGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.99999999999463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13150_c0_g2_337_TPlot.pdf
TRINITY_DN13150_c0_g2:338	si_s71	TRINITY_DN13150_c0_g2	327	347	338	-25.70	-19.80	0.770428015564202	6	1-18,347-330	19-21,329-327[UP3]	...((((((((((((((((((&))))))))))))))))))...	AACGAAGAGAGGAAAUAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13150_c0_g2_338_TPlot.pdf
TRINITY_DN13150_c0_g2:339	si_s70	TRINITY_DN13150_c0_g2	328	348	339	-25.80	-19.80	0.767441860465116	6	2-19,347-330	1-1,348-348[UP5];20-21,329-328[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACGAAGAGAGGAAAUAGAAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13150_c0_g2_339_TPlot.pdf
TRINITY_DN13150_c0_g2:340	si_s69	TRINITY_DN13150_c0_g2	329	349	340	-23.40	-19.80	0.846153846153846	6.5	3-20,347-330	1-2,349-348[UP5];21-21,329-329[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGAAGAGAGGAAAUAGAAGAA&AACUUCUAUUUUUUUUCUUUC	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN13150_c0_g2_340_TPlot.pdf
TRINITY_DN13150_c0_g2:341	si_s68	TRINITY_DN13150_c0_g2	330	350	341	-23.10	-19.80	0.857142857142857	7	4-21,347-330	1-3,350-348[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGAGAGGAAAUAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13150_c0_g2_341_TPlot.pdf
TRINITY_DN13150_c0_g2:342	si_s67	TRINITY_DN13150_c0_g2	331	351	342	-25.60	-18.60	0.7265625	8.5	5-21,347-331	1-4,351-348[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGAGAGGAAAUAGAAGAAAC&GCAACUUCUAUUUUUUUUCUU	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN13150_c0_g2_342_TPlot.pdf
TRINITY_DN13150_c0_g2:343	si_s66	TRINITY_DN13150_c0_g2	332	352	343	-26.30	-17.70	0.673003802281369	10.5	6-21,347-332	1-5,352-348[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAGAGGAAAUAGAAGAAACU&AGCAACUUCUAUUUUUUUUCU	3	0.999999804179221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN13150_c0_g2_343_TPlot.pdf
TRINITY_DN13150_c0_g2:62	si_a359	TRINITY_DN13150_c0_g2	48	71	62	-29.20	-19.52	0.668493150684932	10	1-12,71-60;15-20,54-49	13-14,59-55[AILt];21-21,48-48[UP3]	.((((((.....((((((((((((&))))))))))))---..)))))).	CUGAUCCUAAUCUCAAAGUAGAAU&AUUCUAUUUUGA---UCGGAUCAA	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN13150_c0_g2_62_TPlot.pdf
TRINITY_DN13150_c0_g2:63	si_a358	TRINITY_DN13150_c0_g2	49	72	63	-29.10	-19.52	0.670790378006873	7	2-13,71-60;16-21,54-49	1-1,72-72[UP5];14-15,59-55[AILt]	((((((.....((((((((((((.&.))))))))))))---..))))))	UGAUCCUAAUCUCAAAGUAGAAUG&AAUUCUAUUUUGA---UCGGAUCA	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN13150_c0_g2_63_TPlot.pdf
TRINITY_DN13151_c0_g1:135	si_a464	TRINITY_DN13151_c0_g1	124	144	135	-19.60	-13.50	0.688775510204082	10.5	1-14,144-131	15-21,130-124[UP3]	.......((((((((((((((&)))))))))))))).......	UAUGUAGACAUGUUGUAUGUG&UAUAUAUAAUAUGUAAUUAUU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN13151_c0_g1_135_TPlot.pdf
TRINITY_DN1315_c0_g1:173	si_s886	TRINITY_DN1315_c0_g1	162	182	173	-26.50	-17.30	0.652830188679245	11.5	6-20,177-163	1-5,182-178[UP5];21-21,162-162[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGAAAGCUUGUUUAUCUAAA&UAAAAAUAAAUAGGCUUUCUC	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN1315_c0_g1_173_TPlot.pdf
TRINITY_DN1315_c0_g1:174	si_s885	TRINITY_DN1315_c0_g1	163	183	174	-26.20	-17.30	0.66030534351145	12.5	7-21,177-163	1-6,183-178[UP5]	(((((((((((((((......&......)))))))))))))))	AGAAAGCUUGUUUAUCUAAAC&CUAAAAAUAAAUAGGCUUUCU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s885_TRINITY_DN1315_c0_g1_174_TPlot.pdf
TRINITY_DN1315_c0_g1:3909	si_a142	TRINITY_DN1315_c0_g1	3898	3918	3909	-23.50	-17.50	0.74468085106383	8	5-21,3914-3898	1-4,3918-3915[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUAAAAUGACAACGAUUCAUG&AAUUAAUCGUUGUUGUUUUAA	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1315_c0_g1_3909_TPlot.pdf
TRINITY_DN1315_c1_g1:1684	si_a356	TRINITY_DN1315_c1_g1	1672	1693	1684	-26.90	-19.30	0.717472118959108	6	1-16,1693-1678;18-20,1675-1673	17-17,1677-1676[AILt];21-21,1672-1672[UP3]	.(((..((((((((((((((((&))))))))))))))))-.))).	CUCCUCAUCAAAAUGGAGUUGA&UUAAUUCUAUUUUGAU-CGGAU	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN1315_c1_g1_1684_TPlot.pdf
TRINITY_DN1315_c1_g1:1685	si_a355	TRINITY_DN1315_c1_g1	1673	1694	1685	-26.80	-19.20	0.716417910447761	6	2-17,1693-1678;19-21,1675-1673	1-1,1694-1694[UP5];18-18,1677-1676[AILt]	(((..((((((((((((((((.&.))))))))))))))))-.)))	UCCUCAUCAAAAUGGAGUUGAG&AUUAAUUCUAUUUUGAU-CGGA	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN1315_c1_g1_1685_TPlot.pdf
TRINITY_DN1315_c1_g1:1686	si_a354	TRINITY_DN1315_c1_g1	1675	1695	1686	-26.20	-17.20	0.656488549618321	7.5	3-18,1693-1678;20-21,1676-1675	1-2,1695-1694[UP5];19-19,1677-1677[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	CUCAUCAAAAUGGAGUUGAGG&UAUUAAUUCUAUUUUGAUCGG	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN1315_c1_g1_1686_TPlot.pdf
TRINITY_DN1315_c1_g1:1687	si_a353	TRINITY_DN1315_c1_g1	1676	1696	1687	-24.00	-16.40	0.683333333333333	10	4-19,1693-1678	1-3,1696-1694[UP5];20-21,1677-1676[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCAUCAAAAUGGAGUUGAGGA&AUAUUAAUUCUAUUUUGAUCG	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN1315_c1_g1_1687_TPlot.pdf
TRINITY_DN1315_c1_g1:1688	si_a352	TRINITY_DN1315_c1_g1	1677	1697	1688	-22.50	-16.40	0.728888888888889	11	5-20,1693-1678	1-4,1697-1694[UP5];21-21,1677-1677[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAUCAAAAUGGAGUUGAGGAG&AAUAUUAAUUCUAUUUUGAUC	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN1315_c1_g1_1688_TPlot.pdf
TRINITY_DN1315_c1_g1:1689	si_a351	TRINITY_DN1315_c1_g1	1678	1698	1689	-20.50	-16.40	0.8	11.5	6-21,1693-1678	1-5,1698-1694[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUCAAAAUGGAGUUGAGGAGU&AAAUAUUAAUUCUAUUUUGAU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN1315_c1_g1_1689_TPlot.pdf
TRINITY_DN1315_c1_g1:1690	si_a350	TRINITY_DN1315_c1_g1	1679	1699	1690	-20.30	-15.30	0.753694581280788	13.5	7-21,1693-1679	1-6,1699-1694[UP5]	(((((((((((((((......&......)))))))))))))))	UCAAAAUGGAGUUGAGGAGUC&AAAAUAUUAAUUCUAUUUUGA	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1315_c1_g1_1690_TPlot.pdf
TRINITY_DN1315_c1_g1:1706	si_a291	TRINITY_DN1315_c1_g1	1695	1715	1706	-27.70	-19.58	0.706859205776173	5.5	1-12,1715-1704;16-21,1700-1695	13-15,1703-1701[SIL]	((((((...((((((((((((&))))))))))))...))))))	GAGUCUCAAUUAAAUUCGAGC&GCUUGGAUUUAAAAAAGAUUC	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN1315_c1_g1_1706_TPlot.pdf
TRINITY_DN1315_c1_g1:1815	si_s71	TRINITY_DN1315_c1_g1	1804	1824	1815	-25.70	-17.90	0.696498054474708	6.5	1-5,1824-1820;7-19,1818-1806	6-6,1819-1819[SIL];20-21,1805-1804[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AAGAGAGAAAAGAAGCAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1315_c1_g1_1815_TPlot.pdf
TRINITY_DN1315_c1_g1:1816	si_s70	TRINITY_DN1315_c1_g1	1805	1825	1816	-25.80	-18.50	0.717054263565891	6.5	2-6,1824-1820;8-20,1818-1806	1-1,1825-1825[UP5];7-7,1819-1819[SIL];21-21,1805-1805[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAGAGAAAAGAAGCAGAAGC&ACUUCUAUUUUUUUUCUUUCC	3	0.999999982747854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1315_c1_g1_1816_TPlot.pdf
TRINITY_DN1315_c1_g1:1817	si_s69	TRINITY_DN1315_c1_g1	1806	1826	1817	-23.40	-18.50	0.790598290598291	7.5	3-7,1824-1820;9-21,1818-1806	1-2,1826-1825[UP5];8-8,1819-1819[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGAGAAAAGAAGCAGAAGCA&AACUUCUAUUUUUUUUCUUUC	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1315_c1_g1_1817_TPlot.pdf
TRINITY_DN1315_c1_g1:2729	si_a397	TRINITY_DN1315_c1_g1	2719	2738	2729	-24.00	-15.90	0.6625	7	3-16,2736-2723;18-20,2722-2720	1-2,2738-2737[UP5];17-17,x-x[BULq];21-21,2719-2719[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	CAGC-AAGCAGUUCUAUAUCG&GAAUAUAGAAUUGUUUUGUUU	4	0.999988743695479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN1315_c1_g1_2729_TPlot.pdf
TRINITY_DN1315_c1_g1:2733	si_s293	TRINITY_DN1315_c1_g1	2722	2743	2733	-34.30	-25.10	0.731778425655977	7.5	1-9,2743-2735;10-18,2733-2725	x-x,2734-2734[BULt];19-21,2724-2722[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	CAAGCAGUUCUAUAUCGGCUAG&CUAGUCGAU-UGGAAUUGCGAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN1315_c1_g1_2733_TPlot.pdf
TRINITY_DN1315_c1_g1:4650	si_a763	TRINITY_DN1315_c1_g1	4638	4659	4650	-28.80	-18.90	0.65625	7	1-12,4659-4648;13-19,4646-4640	x-x,4647-4647[BULt];20-21,4639-4638[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	GAAGUCGAUCCAGAAAUCCAAA&UUUGGGUUUUUG-AUUGAUUCA	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1315_c1_g1_4650_TPlot.pdf
TRINITY_DN1315_c1_g1:7407	si_s75	TRINITY_DN1315_c1_g1	7396	7416	7407	-24.00	-15.70	0.654166666666667	12	5-19,7412-7398	1-4,7416-7413[UP5];20-21,7397-7396[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAGGGGAAAGAAAGGACCUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1315_c1_g1_7407_TPlot.pdf
TRINITY_DN1315_c1_g1:8174	si_a358	TRINITY_DN1315_c1_g1	8159	8183	8174	-29.10	-19.30	0.663230240549828	11	3-9,8181-8175;11-13,8173-8171;14-21,8166-8159	1-2,8183-8182[UP5];10-10,8174-8174[SIL];x-x,8170-8167[BULt]	((((((((....(((.(((((((..&..))))))).)))----))))))))	UGAUCCGAUAGAUCAUGAUAGAGCA&AAUUCUAUUUUGA----UCGGAUCA	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN1315_c1_g1_8174_TPlot.pdf
TRINITY_DN1315_c3_g2:263	si_s499	TRINITY_DN1315_c3_g2	252	274	263	-22.60	-16.10	0.712389380530973	9	1-9,274-266;11-20,262-253	10-10,265-263[AILt];21-21,252-252[UP3]	.((((((((((...(((((((((&)))))))))--.)))))))))).	CUGGAGUUGUUAUAUGUUUGUAU&AUAUAAACA--AAACAAUUCUAU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN1315_c3_g2_263_TPlot.pdf
TRINITY_DN1315_c4_g2:883	si_a623	TRINITY_DN1315_c4_g2	871	892	883	-33.10	-21.60	0.652567975830816	8	1-12,892-881;15-21,877-871	13-14,880-878[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	AAUUGGCUAAGGUACGUCUAGU&ACUAGGCGUAUU-AUGUCGAUU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN1315_c4_g2_883_TPlot.pdf
TRINITY_DN13166_c0_g1:185	si_a65	TRINITY_DN13166_c0_g1	171	194	185	-27.70	-18.80	0.67870036101083	8.5	3-14,192-181;15-20,177-172	1-2,194-193[UP5];x-x,180-178[BULt];21-21,171-171[UP3]	.((((((...((((((((((((..&..))))))))))))---)))))).	CGAACAAAAUUUUGAAAGGAGCCA&UCGCUUCUUUCAAA---UUGUUUU	3	0.999997049065349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN13166_c0_g1_185_TPlot.pdf
TRINITY_DN13166_c0_g2:675	si_s608	TRINITY_DN13166_c0_g2	664	687	675	-26.70	-17.50	0.655430711610487	13	2-8,686-680;9-19,676-666	1-1,687-687[UP5];x-x,679-677[BULt];20-21,665-664[UP3]	..(((((((((((...(((((((.&.)))))))---)))))))))))..	AGUGGAUUUAGGAGCAGAGGUUCA&CGAAUCUU---UUUUAAAUCCAAG	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN13166_c0_g2_675_TPlot.pdf
TRINITY_DN13168_c0_g1:1263	si_s472	TRINITY_DN13168_c0_g1	1252	1272	1263	-31.80	-21.10	0.663522012578616	10.5	3-6,1270-1267;8-16,1265-1257	1-2,1272-1271[UP5];7-7,1266-1266[SIL];17-21,1256-1252[UP3]	.....(((((((((.((((..&..)))).))))))))).....	UAGGUUGGGAUCCGGUGGAAG&UAUCCAACGGAUCCUAUAUUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s472_TRINITY_DN13168_c0_g1_1263_TPlot.pdf
TRINITY_DN13168_c0_g1:1264	si_s471	TRINITY_DN13168_c0_g1	1253	1273	1264	-32.00	-21.10	0.659375	11.5	4-7,1270-1267;9-17,1265-1257	1-3,1273-1271[UP5];8-8,1266-1266[SIL];18-21,1256-1253[UP3]	....(((((((((.((((...&...)))).)))))))))....	AGGUUGGGAUCCGGUGGAAGG&AUAUCCAACGGAUCCUAUAUU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN13168_c0_g1_1264_TPlot.pdf
TRINITY_DN13168_c0_g1:1274	si_a500	TRINITY_DN13168_c0_g1	1262	1283	1274	-34.40	-22.40	0.651162790697674	10	4-16,1280-1268;17-21,1266-1262	1-3,1283-1281[UP5];x-x,1267-1267[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	UCCGGUGGAAGGCGAAAGGUAC&UCGUUUUUCGUCUUCC-UUGGA	2	0.999999915963014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN13168_c0_g1_1274_TPlot.pdf
TRINITY_DN1316_c0_g1:5042	si_a547	TRINITY_DN1316_c0_g1	5030	5051	5042	-26.90	-19.90	0.739776951672862	5.5	1-13,5051-5039;14-19,5037-5032	x-x,5038-5038[BULt];20-21,5031-5030[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	AUGUGAGGAAAAUGGAUUGAAC&GUUCAAUCUAUUU-CUUUAUCU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN1316_c0_g1_5042_TPlot.pdf
TRINITY_DN1316_c0_g1:5043	si_a546	TRINITY_DN1316_c0_g1	5031	5052	5043	-28.60	-21.00	0.734265734265734	5	1-14,5052-5039;15-20,5037-5032	x-x,5038-5038[BULt];21-21,5031-5031[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	UGUGAGGAAAAUGGAUUGAACU&GGUUCAAUCUAUUU-CUUUAUC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN1316_c0_g1_5043_TPlot.pdf
TRINITY_DN1316_c0_g1:5046	si_a543	TRINITY_DN1316_c0_g1	5034	5055	5046	-28.70	-18.70	0.651567944250871	8.5	4-17,5052-5039;18-21,5037-5034	1-3,5055-5053[UP5];x-x,5038-5038[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	GAGGAAAAUGGAUUGAACUUUA&AUCGGUUCAAUCUAUUU-CUUU	2	0.995709762510726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN1316_c0_g1_5046_TPlot.pdf
TRINITY_DN1316_c0_g1:5082	si_s521	TRINITY_DN1316_c0_g1	5071	5091	5082	-23.90	-15.70	0.656903765690377	8.5	1-6,5091-5086;8-18,5084-5074	7-7,5085-5085[SIL];19-21,5073-5071[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UAUGUGAUUUUGAACUAGGGA&UUCUUAAUUCGAAAUCAUUUU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN1316_c0_g1_5082_TPlot.pdf
TRINITY_DN1316_c0_g1:5084	si_s519	TRINITY_DN1316_c0_g1	5073	5093	5084	-24.40	-16.70	0.684426229508197	7	2-8,5092-5086;10-20,5084-5074	1-1,5093-5093[UP5];9-9,5085-5085[SIL];21-21,5073-5073[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UGUGAUUUUGAACUAGGGAUU&UAUUCUUAAUUCGAAAUCAUU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN1316_c0_g1_5084_TPlot.pdf
TRINITY_DN1316_c0_g1:5085	si_s518	TRINITY_DN1316_c0_g1	5074	5094	5085	-24.60	-16.70	0.678861788617886	8	3-9,5092-5086;11-21,5084-5074	1-2,5094-5093[UP5];10-10,5085-5085[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GUGAUUUUGAACUAGGGAUUC&AUAUUCUUAAUUCGAAAUCAU	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN1316_c0_g1_5085_TPlot.pdf
TRINITY_DN13172_c0_g2:1307	si_a17	TRINITY_DN13172_c0_g2	1296	1317	1307	-24.30	-16.40	0.674897119341564	12.5	3-7,1315-1311;9-21,1308-1296	1-2,1317-1316[UP5];8-8,1310-1309[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGCUGAGGAUGAAGAGGGUUAC&AAAGCCU-AUUUAUUUUUAGUU	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN13172_c0_g2_1307_TPlot.pdf
TRINITY_DN13172_c0_g2:2422	si_s809	TRINITY_DN13172_c0_g2	2411	2438	2422	-28.50	-20.40	0.715789473684211	17.5	1-8,2438-2431;9-18,2423-2414	x-x,2430-2424[BULt];19-21,2413-2411[UP3]	...((((((((((.......((((((((&))))))))-------))))))))))...	CCGGAGAAAAGGUCGAAUUAAACGAAGA&UCUUCGUU-------ACCUUUUCUUAAU	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN13172_c0_g2_2422_TPlot.pdf
TRINITY_DN13172_c0_g2:2431	si_s807	TRINITY_DN13172_c0_g2	2413	2440	2431	-28.90	-20.40	0.705882352941176	18.5	3-10,2438-2431;11-20,2423-2414	1-2,2440-2439[UP5];x-x,2430-2424[BULt];21-21,2413-2413[UP3]	.((((((((((.......((((((((..&..))))))))-------)))))))))).	GGAGAAAAGGUCGAAUUAAACGAAGAAG&UAUCUUCGUU-------ACCUUUUCUUA	3	0.999756459400394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN13172_c0_g2_2431_TPlot.pdf
TRINITY_DN13172_c0_g2:2434	si_s804	TRINITY_DN13172_c0_g2	2416	2443	2434	-27.90	-18.40	0.659498207885305	10	1-4,2443-2440;6-13,2438-2431;14-21,2423-2416	5-5,2439-2439[SIL];x-x,2430-2424[BULt]	((((((((.......((((((((.((((&)))).))))))))-------))))))))	GAAAAGGUCGAAUUAAACGAAGAAGAAA&UUUUAUCUUCGUU-------ACCUUUUC	4	0.999999999999142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN13172_c0_g2_2434_TPlot.pdf
TRINITY_DN13172_c0_g2:2766	si_a777	TRINITY_DN13172_c0_g2	2755	2775	2766	-27.00	-18.10	0.67037037037037	11.5	1-3,2775-2773;6-15,2770-2761	4-5,2772-2771[SIL];16-21,2760-2755[UP3]	......((((((((((..(((&)))..))))))))))......	AUUGCAGGAGGAGUUGUUUCA&UGAUUCAACUCUUCUAUUUUU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN13172_c0_g2_2766_TPlot.pdf
TRINITY_DN13172_c0_g2:2767	si_a776	TRINITY_DN13172_c0_g2	2756	2776	2767	-27.10	-18.50	0.682656826568266	10.5	1-4,2776-2773;7-16,2770-2761	5-6,2772-2771[SIL];17-21,2760-2756[UP3]	.....((((((((((..((((&))))..)))))))))).....	UUGCAGGAGGAGUUGUUUCAG&UUGAUUCAACUCUUCUAUUUU	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN13172_c0_g2_2767_TPlot.pdf
TRINITY_DN13172_c0_g2:2768	si_a775	TRINITY_DN13172_c0_g2	2757	2777	2768	-27.20	-18.50	0.680147058823529	11	2-5,2776-2773;8-17,2770-2761	1-1,2777-2777[UP5];6-7,2772-2771[SIL];18-21,2760-2757[UP3]	....((((((((((..((((.&.))))..))))))))))....	UGCAGGAGGAGUUGUUUCAGG&AUUGAUUCAACUCUUCUAUUU	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN13172_c0_g2_2768_TPlot.pdf
TRINITY_DN13172_c0_g2:3007	si_a839	TRINITY_DN13172_c0_g2	2996	3020	3007	-26.50	-17.90	0.675471698113208	9.5	1-9,3020-3012;10-17,3007-3000;19-21,2998-2996	x-x,3011-3008[BULt];18-18,2999-2999[SIL]	(((.((((((((....(((((((((&)))))))))----)))))))).)))	AAGAUAGCGACUAUUUUCUAUUUUU&AAAAAUAGA----AGUUGCUAACUU	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN13172_c0_g2_3007_TPlot.pdf
TRINITY_DN13172_c0_g2:3014	si_a836	TRINITY_DN13172_c0_g2	2999	3023	3014	-24.10	-16.40	0.680497925311203	14.5	4-12,3020-3012;13-20,3007-3000	1-3,3023-3021[UP5];x-x,3011-3008[BULt];21-21,2999-2999[UP3]	.((((((((....(((((((((...&...)))))))))----)))))))).	AUAGCGACUAUUUUCUAUUUUUACU&AAAAAAAAUAGA----AGUUGCUAA	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN13172_c0_g2_3014_TPlot.pdf
TRINITY_DN13172_c0_g2:3015	si_a835	TRINITY_DN13172_c0_g2	3000	3026	3015	-26.00	-17.10	0.657692307692308	8.5	1-4,3026-3023;5-13,3020-3012;14-21,3007-3000	x-x,3022-3021[BULt];x-x,3011-3008[BULt]	((((((((....(((((((((..((((&))))--)))))))))----))))))))	UAGCGACUAUUUUCUAUUUUUACUUUC&GAAA--AAAAAUAGA----AGUUGCUA	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN13172_c0_g2_3015_TPlot.pdf
TRINITY_DN13172_c0_g2:3016	si_a834	TRINITY_DN13172_c0_g2	3001	3027	3016	-26.30	-17.10	0.650190114068441	8.5	1-5,3027-3023;6-14,3020-3012;15-21,3007-3001	x-x,3022-3021[BULt];x-x,3011-3008[BULt]	(((((((....(((((((((..(((((&)))))--)))))))))----)))))))	AGCGACUAUUUUCUAUUUUUACUUUCU&AGAAA--AAAAAUAGA----AGUUGCU	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a834_TRINITY_DN13172_c0_g2_3016_TPlot.pdf
TRINITY_DN13172_c0_g2:3344	si_s84	TRINITY_DN13172_c0_g2	3333	3353	3344	-32.30	-21.90	0.678018575851393	7	2-5,3352-3349;8-21,3346-3333	1-1,3353-3353[UP5];6-7,3348-3347[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	CGAAGAAGAAGAAAACGAGGU&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN13172_c0_g2_3344_TPlot.pdf
TRINITY_DN13172_c0_g2:3438	si_s72	TRINITY_DN13172_c0_g2	3427	3447	3438	-24.10	-19.00	0.788381742738589	6	1-4,3447-3444;6-19,3442-3429	5-5,3443-3443[SIL];20-21,3428-3427[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	UUGGAAAGAAAAGAAGAAGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13172_c0_g2_3438_TPlot.pdf
TRINITY_DN13172_c0_g2:3670	si_s91	TRINITY_DN13172_c0_g2	3658	3679	3670	-34.70	-22.90	0.659942363112392	7	2-14,3678-3666;15-15,3664-3664;17-19,3662-3660	1-1,3679-3679[UP5];x-x,3665-3665[BULt];16-16,3663-3663[SIL];20-21,3659-3658[UP3]	..(((.(.(((((((((((((.&.)))))))))))))-).)))..	UACGAUGACGAGGAAGAAGAGG&UUUCUUCUUCUUCG-CUUCGGA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN13172_c0_g2_3670_TPlot.pdf
TRINITY_DN13172_c0_g2:3672	si_s89	TRINITY_DN13172_c0_g2	3660	3682	3672	-35.30	-23.00	0.651558073654391	6.5	2-4,3681-3679;5-16,3677-3666;17-17,3664-3664;19-21,3662-3660	1-1,3682-3682[UP5];x-x,3678-3678[BULt];x-x,3665-3665[BULt];18-18,3663-3663[SIL]	(((.(.((((((((((((.(((.&.)))-))))))))))))-).)))	CGAUGACGAGGAAGAAGAGGAGA&CCUU-UCUUCUUCUUCG-CUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN13172_c0_g2_3672_TPlot.pdf
TRINITY_DN13172_c0_g2:3676	si_s85	TRINITY_DN13172_c0_g2	3665	3685	3676	-33.80	-25.00	0.739644970414201	5.5	1-5,3685-3681;7-20,3679-3666	6-6,3680-3680[SIL];21-21,3665-3665[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	ACGAGGAAGAAGAGGAGAAAG&CUUUCCUUUCUUCUUCUUCGC	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN13172_c0_g2_3676_TPlot.pdf
TRINITY_DN13172_c0_g2:3678	si_s83	TRINITY_DN13172_c0_g2	3667	3687	3678	-30.90	-25.10	0.812297734627832	4.5	1-7,3687-3681;9-21,3679-3667	8-8,3680-3680[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAGGAAGAAGAGGAGAAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN13172_c0_g2_3678_TPlot.pdf
TRINITY_DN13172_c0_g2:3683	si_s78	TRINITY_DN13172_c0_g2	3672	3692	3683	-26.20	-20.40	0.778625954198473	3	1-12,3692-3681;14-21,3679-3672	13-13,3680-3680[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGAAGAGGAGAAAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	2	0.999961640317944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13172_c0_g2_3683_TPlot.pdf
TRINITY_DN13172_c0_g2:3684	si_s77	TRINITY_DN13172_c0_g2	3673	3693	3684	-25.50	-20.00	0.784313725490196	3	1-13,3693-3681;15-21,3679-3673	14-14,3680-3680[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAAGAGGAGAAAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN13172_c0_g2_3684_TPlot.pdf
TRINITY_DN13172_c0_g2:3685	si_s76	TRINITY_DN13172_c0_g2	3674	3694	3685	-23.60	-16.80	0.711864406779661	4	2-14,3693-3681;16-21,3679-3674	1-1,3694-3694[UP5];15-15,3680-3680[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAGGAGAAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13172_c0_g2_3685_TPlot.pdf
TRINITY_DN13172_c0_g2:750	si_a403	TRINITY_DN13172_c0_g2	739	760	750	-22.00	-14.90	0.677272727272727	9	2-8,759-753;9-17,751-743	1-1,760-760[UP5];x-x,752-752[BULt];18-21,742-739[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	CCCAGUAAGCAAACACGAUUCA&AGAAUUGU-UUUGUUUAUAUUU	3	0.99999999992403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN13172_c0_g2_750_TPlot.pdf
TRINITY_DN13172_c0_g2:754	si_a400	TRINITY_DN13172_c0_g2	742	763	754	-22.80	-14.90	0.653508771929825	12	5-11,759-753;12-20,751-743	1-4,763-760[UP5];x-x,752-752[BULt];21-21,742-742[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	AGUAAGCAAACACGAUUCACCA&UAUAGAAUUGU-UUUGUUUAUA	4	0.999999999993243	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN13172_c0_g2_754_TPlot.pdf
TRINITY_DN13178_c0_g1:832	si_a223	TRINITY_DN13178_c0_g1	821	841	832	-27.10	-18.60	0.686346863468635	9.5	1-17,841-825	18-21,824-821[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAUGGUGGAGAUGUGGGUUUG&UAAACUCAUGUUUCUAUAAUC	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN13178_c0_g1_832_TPlot.pdf
TRINITY_DN13178_c0_g1:834	si_a221	TRINITY_DN13178_c0_g1	823	843	834	-25.20	-19.10	0.757936507936508	9.5	2-19,842-825	1-1,843-843[UP5];20-21,824-823[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UGGUGGAGAUGUGGGUUUGGC&AUUAAACUCAUGUUUCUAUAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN13178_c0_g1_834_TPlot.pdf
TRINITY_DN1317_c0_g1:1605	si_a67	TRINITY_DN1317_c0_g1	1587	1614	1605	-27.20	-18.20	0.669117647058823	18.5	1-11,1614-1604;12-20,1596-1588	x-x,1603-1597[BULt];21-21,1587-1587[UP3]	.(((((((((.......(((((((((((&)))))))))))-------))))))))).	AGGAGGCAGUACCUUAGUUGGAAGAAGC&GCUUCUUUCAA-------AUUGUUUUUC	3	0.999999999860557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1317_c0_g1_1605_TPlot.pdf
TRINITY_DN1317_c0_g1:1606	si_a66	TRINITY_DN1317_c0_g1	1588	1615	1606	-26.70	-18.30	0.685393258426966	18.5	2-12,1614-1604;13-21,1596-1588	1-1,1615-1615[UP5];x-x,1603-1597[BULt]	(((((((((.......(((((((((((.&.)))))))))))-------)))))))))	GGAGGCAGUACCUUAGUUGGAAGAAGCC&CGCUUCUUUCAA-------AUUGUUUUU	4	0.999999995936609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1317_c0_g1_1606_TPlot.pdf
TRINITY_DN1317_c0_g1:1720	si_a549	TRINITY_DN1317_c0_g1	1705	1729	1720	-29.50	-19.20	0.650847457627119	11.5	3-15,1727-1715;16-21,1710-1705	1-2,1729-1728[UP5];x-x,1714-1711[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	GGGGAUAUUGGAGGAGGUGGAUUAG&UCAAUCUAUUUCUUU----AUCUCC	4	0.999903674439181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN1317_c0_g1_1720_TPlot.pdf
TRINITY_DN1317_c0_g1:1721	si_a775	TRINITY_DN1317_c0_g1	1710	1730	1721	-27.20	-18.30	0.672794117647059	9	1-9,1730-1722;11-18,1720-1713	10-10,1721-1721[SIL];19-21,1712-1710[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAUUGGAGGAGGUGGAUUAGU&AUUGAUUCAACUCUUCUAUUU	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN1317_c0_g1_1721_TPlot.pdf
TRINITY_DN1317_c0_g1:1725	si_a788	TRINITY_DN1317_c0_g1	1712	1734	1725	-24.80	-16.60	0.669354838709677	10	1-7,1734-1728;10-16,1725-1719;17-21,1716-1712	8-9,1727-1726[SIL];x-x,1718-1717[BULt]	(((((..(((((((..(((((((&)))))))..)))))))--)))))	UUGGAGGAGGUGGAUUAGUAGGA&UUCUAUUUUUCUAUUU--UCCAA	3	0.999999999996279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1317_c0_g1_1725_TPlot.pdf
TRINITY_DN1317_c0_g1:1792	si_s559	TRINITY_DN1317_c0_g1	1782	1801	1792	-27.80	-18.50	0.665467625899281	9	3-16,1799-1786;18-20,1785-1783	1-2,1801-1800[UP5];17-17,x-x[BULq];21-21,1782-1782[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	AUUG-CCCGGAGAUAUUGGGG&AAUUAAUAUUUUCGGGACAAG	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN1317_c0_g1_1792_TPlot.pdf
TRINITY_DN1317_c0_g1:2471	si_a404	TRINITY_DN1317_c0_g1	2461	2480	2471	-21.70	-14.40	0.663594470046083	4.5	1-13,2480-2468;15-21,2467-2461	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	UGAAUGU-AAUAAAACGAUUU&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1317_c0_g1_2471_TPlot.pdf
TRINITY_DN13184_c0_g1:1202	si_a333	TRINITY_DN13184_c0_g1	1191	1210	1202	-30.60	-20.50	0.669934640522876	10	4-8,1207-1203;10-20,1202-1192	1-3,1210-1208[UP5];9-9,x-x[BULq];21-21,1191-1191[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	GUUUCGGGACGA-GAAUGUUC&UUUUAUUCCUUGUCCCGAAAA	4	0.999687580080934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN13184_c0_g1_1202_TPlot.pdf
TRINITY_DN1318_c0_g1:92	si_s526	TRINITY_DN1318_c0_g1	81	101	92	-25.60	-21.00	0.8203125	5	2-21,100-81	1-1,101-101[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GAUUGAAAAUGGUUUUGAGUG&AAUUCGAAAUCAUUUUUGAUC	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN1318_c0_g1_92_TPlot.pdf
TRINITY_DN13199_c0_g1:603	si_s81	TRINITY_DN13199_c0_g1	592	618	603	-28.90	-19.80	0.685121107266436	20	1-7,618-612;8-20,605-593	x-x,611-606[BULt];21-21,592-592[UP3]	.(((((((((((((......(((((((&)))))))------))))))))))))).	UGGAGGAGAGGGGGGUACUUGGGAAGA&UUUUCUU------UCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN13199_c0_g1_603_TPlot.pdf
TRINITY_DN13199_c0_g1:681	si_s803	TRINITY_DN13199_c0_g1	670	690	681	-26.00	-18.70	0.719230769230769	9	3-14,688-677;16-21,675-670	1-2,690-689[UP5];15-15,676-676[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAGGAGAUGAGGAUGAGGA&AUUUUAUCUUCGUUACCUUUU	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN13199_c0_g1_681_TPlot.pdf
TRINITY_DN13199_c0_g1:682	si_s802	TRINITY_DN13199_c0_g1	671	691	682	-26.40	-18.00	0.681818181818182	10.5	4-15,688-677;17-21,675-671	1-3,691-689[UP5];16-16,676-676[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GAAGGAGAUGAGGAUGAGGAA&UAUUUUAUCUUCGUUACCUUU	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN13199_c0_g1_682_TPlot.pdf
TRINITY_DN13199_c0_g1:683	si_s80	TRINITY_DN13199_c0_g1	671	693	683	-28.20	-19.60	0.695035460992908	9	3-8,691-686;9-13,684-680;14-21,678-671	1-2,693-692[UP5];x-x,685-685[BULt];x-x,679-679[BULt]	((((((((.(((((.((((((..&..))))))-)))))-))))))))	GAAGGAGAUGAGGAUGAGGAACC&UUUUUCUU-UCCUU-UCUUCUUC	2	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN13199_c0_g1_683_TPlot.pdf
TRINITY_DN13199_c0_g1:889	si_s75	TRINITY_DN13199_c0_g1	877	898	889	-24.00	-17.90	0.745833333333333	8.5	3-10,896-889;11-20,887-878	1-2,898-897[UP5];x-x,888-888[BULt];21-21,877-877[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	UGAAAGGGAAGCAAGAGAAAAG&UAUUUUUUUU-CUUUCCUUUCU	2	0.999999924868368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13199_c0_g1_889_TPlot.pdf
TRINITY_DN13199_c0_g1:900	si_s68	TRINITY_DN13199_c0_g1	890	912	900	-23.10	-15.60	0.675324675324675	9.5	1-5,912-908;6-16,904-894;18-21,893-890	x-x,907-905[BULt];17-17,x-x[BULq]	((((-(((((((((((...(((((&)))))---))))))))))).))))	AGAG-AAAAGAGUAGAGAGAGUUG&CAACU---UCUAUUUUUUUUCUUU	2	0.999999999994141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13199_c0_g1_900_TPlot.pdf
TRINITY_DN13199_c0_g1:902	si_a782	TRINITY_DN13199_c0_g1	889	912	902	-26.40	-17.50	0.662878787878788	8.5	1-7,912-906;8-14,904-898;15-18,895-892	x-x,905-905[BULt];x-x,897-896[BULt];19-21,891-889[UP3]	...((((..(((((((.(((((((&)))))))-)))))))--))))...	AAGAGAAAAGAGUAGAGAGAGUUG&CAACUCU-UCUAUUU--UUCUAUU	2	0.999992005192978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN13199_c0_g1_902_TPlot.pdf
TRINITY_DN1319_c0_g1:1427	si_a113	TRINITY_DN1319_c0_g1	1416	1436	1427	-26.20	-18.90	0.721374045801527	14	8-21,1429-1416	1-7,1436-1430[UP5]	((((((((((((((.......&.......))))))))))))))	UAUGAAACGAGCUCAAGAGUU&AAAAUACGAGCUUGUUUUAUA	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN1319_c0_g1_1427_TPlot.pdf
TRINITY_DN1319_c0_g1:2710	si_a318	TRINITY_DN1319_c0_g1	2700	2719	2710	-22.50	-15.20	0.675555555555556	7	1-11,2719-2709;13-20,2708-2701	12-12,x-x[BULq];21-21,2700-2700[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	UUGGAGGAA-UAUGGAUAGAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999964765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1319_c0_g1_2710_TPlot.pdf
TRINITY_DN131_c1_g1:1877	si_s38	TRINITY_DN131_c1_g1	1866	1886	1877	-22.70	-14.88	0.655506607929515	5	1-13,1886-1874;17-19,1870-1868	14-16,1873-1871[SIL];20-21,1867-1866[UP3]	..(((...(((((((((((((&)))))))))))))...)))..	CUUCCUCAUAUUAAAGAUUUA&UAAAUCUUUAAUAAUUGGAUU	2	0.998472989752493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN131_c1_g1_1877_TPlot.pdf
TRINITY_DN131_c2_g1:561	si_a866	TRINITY_DN131_c2_g1	550	572	561	-23.30	-15.20	0.652360515021459	9	1-4,572-569;5-19,566-552	x-x,568-567[BULt];20-21,551-550[UP3]	..(((((((((((((((..((((&))))--)))))))))))))))..	UCAUUAGAUCUUUAGUACGGUUG&CAAU--UAUUAAAGAUUUAGUUG	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN131_c2_g1_561_TPlot.pdf
TRINITY_DN13209_c0_g1:379	si_a784	TRINITY_DN13209_c0_g1	364	388	379	-24.70	-16.30	0.659919028340081	12	2-13,387-376;14-18,371-367	1-1,388-388[UP5];x-x,375-372[BULt];19-21,366-364[UP3]	...(((((....((((((((((((.&.))))))))))))----)))))...	UUUAUGGACGAGGAGAUGGGAGAGG&ACUCUUCUAUUUU----UCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13209_c0_g1_379_TPlot.pdf
TRINITY_DN13209_c0_g1:388	si_s80	TRINITY_DN13209_c0_g1	375	397	388	-28.20	-23.60	0.836879432624114	6.5	2-16,396-382;17-21,379-375	1-1,397-397[UP5];x-x,381-380[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GGAGAUGGGAGAGGAAGGAGAAC&UUUUUCUUUCCUUUCU--UCUUC	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN13209_c0_g1_388_TPlot.pdf
TRINITY_DN1320_c0_g1:6519	si_a385	TRINITY_DN1320_c0_g1	6509	6528	6519	-24.80	-16.70	0.673387096774194	5	1-11,6528-6518;13-16,6517-6514;18-21,6512-6509	12-12,x-x[BULq];17-17,6513-6513[SIL]	((((.((((-(((((((((((&))))))))))).)))).))))	UCUGAGUUC-UAAUUCGGAAU&AUUUCGAAUUAAGAAUAUAGA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a385_TRINITY_DN1320_c0_g1_6519_TPlot.pdf
TRINITY_DN13213_c0_g2:546	si_a318	TRINITY_DN13213_c0_g2	535	555	546	-22.50	-14.80	0.657777777777778	6	1-10,555-546;12-13,544-543;16-20,540-536	11-11,545-545[SIL];14-15,542-541[SIL];21-21,535-535[UP3]	.(((((..((.((((((((((&)))))))))).))..))))).	CUAAAAUUAUGAUGGGUAAAU&AUUUAUCCAUGAUUUUUUUAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN13213_c0_g2_546_TPlot.pdf
TRINITY_DN13214_c0_g1:274	si_a183	TRINITY_DN13214_c0_g1	262	282	274	-30.10	-20.40	0.677740863787375	7	2-3,281-280;5-18,279-266;19-21,264-262	1-1,282-282[UP5];4-4,x-x[BULq];x-x,265-265[BULt]	(((.((((((((((((((-((.&.)).))))))))))))))-)))	AACGGGGGAGAGAUGUUG-CUU&UAGAUAAUAUCUUUCCCU-GUU	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN13214_c0_g1_274_TPlot.pdf
TRINITY_DN13219_c0_g1:2012	si_a498	TRINITY_DN13219_c0_g1	2002	2021	2012	-33.50	-22.80	0.680597014925373	5.5	1-5,2021-2017;7-10,2015-2012;12-21,2011-2002	6-6,2016-2016[SIL];11-11,x-x[BULq]	((((((((((-((((.(((((&))))).)))).))))))))))	CGAGGAAGAU-AAAAUCGACA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999988594043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN13219_c0_g1_2012_TPlot.pdf
TRINITY_DN13219_c0_g1:4665	si_s500	TRINITY_DN13219_c0_g1	4654	4676	4665	-22.80	-14.90	0.653508771929825	6.5	1-5,4676-4672;6-8,4670-4668;9-20,4666-4655	x-x,4671-4671[BULt];x-x,4667-4667[BULt];21-21,4654-4654[UP3]	.((((((((((((.(((.(((((&)))))-)))-)))))))))))).	AAUAGAAUUGUUUAUGUAUUGUG&UAUAA-ACA-AAACAAUUCUAUA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN13219_c0_g1_4665_TPlot.pdf
TRINITY_DN13219_c1_g1:497	si_s582	TRINITY_DN13219_c1_g1	486	506	497	-22.50	-15.10	0.671111111111111	5	2-18,505-489	1-1,506-506[UP5];19-21,488-486[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAAUAUUUAUGAUUUUUUUAG&AUAAAAAAAUCAUGGAUAAAU	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN13219_c1_g1_497_TPlot.pdf
TRINITY_DN1321_c0_g1:621	si_s99	TRINITY_DN1321_c0_g1	610	631	621	-34.60	-23.30	0.673410404624277	8	1-8,631-624;9-13,622-618;16-18,615-613	x-x,623-623[BULt];14-15,617-616[SIL];19-21,612-610[UP3]	...(((..(((((.((((((((&))))))))-)))))..)))...	CUCUCCCCUCCGACAGCGAGGA&UCUUCGCU-UCGGAUUGGAAAA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN1321_c0_g1_621_TPlot.pdf
TRINITY_DN1323_c0_g1:338	si_a763	TRINITY_DN1323_c0_g1	327	347	338	-28.80	-19.40	0.673611111111111	5.5	1-12,347-336;14-16,334-332;18-20,330-328	13-13,335-335[SIL];17-17,331-331[SIL];21-21,327-327[UP3]	.(((.(((.((((((((((((&)))))))))))).))).))).	GGAAACGAGCAGAAACCCGAA&UUUGGGUUUUUGAUUGAUUCA	2	0.999944966324608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1323_c0_g1_338_TPlot.pdf
TRINITY_DN13240_c1_g1:238	si_a824	TRINITY_DN13240_c1_g1	227	248	238	-23.60	-15.50	0.656779661016949	5.5	1-6,248-243;7-10,241-238;12-21,236-227	x-x,242-242[BULt];11-11,237-237[SIL]	((((((((((.((((.((((((&))))))-)))).))))))))))	GUUUUUUUUUGUUCCGUUUCUU&AAGAAA-GGAAAGAAAAAAAAU	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN13240_c1_g1_238_TPlot.pdf
TRINITY_DN13245_c2_g1:1362	si_a314	TRINITY_DN13245_c2_g1	1352	1372	1362	-27.10	-18.40	0.678966789667897	5	1-6,1372-1367;8-12,1364-1360;14-21,1359-1352	7-7,1366-1365[AILt];13-13,x-x[BULq]	((((((((-(((((..((((((&))))))-.))))).))))))))	AAAAAUCA-GGAUAUCAUCCAA&UUGGAU-UUAUCCAUGAUUUUU	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN13245_c2_g1_1362_TPlot.pdf
TRINITY_DN1324_c0_g1:2411	si_a471	TRINITY_DN1324_c0_g1	2400	2420	2411	-21.10	-14.00	0.663507109004739	9	1-5,2420-2416;7-8,2414-2413;11-21,2410-2400	6-6,2415-2415[SIL];9-10,2412-2411[SIL]	(((((((((((..((.(((((&))))).))..)))))))))))	GUAUGGCAGUAUCUAGAUGUU&AAUAUGUAAUUAUUGUUAUAU	3	0.999999879536454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN1324_c0_g1_2411_TPlot.pdf
TRINITY_DN1324_c0_g1:30	si_a472	TRINITY_DN1324_c0_g1	19	39	30	-21.50	-14.20	0.66046511627907	10.5	4-7,36-33;9-20,31-20	1-3,39-37[UP5];8-8,32-32[SIL];21-21,19-19[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	CAUGUAGCGAUGAAUACAAAU&AUAUGUAAUUAUUGUUAUAUA	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1324_c0_g1_30_TPlot.pdf
TRINITY_DN1324_c0_g1:5354	si_s8	TRINITY_DN1324_c0_g1	5343	5363	5354	-21.30	-14.00	0.657276995305164	6	2-8,5362-5356;10-16,5354-5348;18-21,5346-5343	1-1,5363-5363[UP5];9-9,5355-5355[SIL];17-17,5347-5347[SIL]	((((.(((((((.(((((((.&.))))))).))))))).))))	GAUGGAGUAAUGUUAAGUAAA&AUUACUUAUUAUUACUAUAUU	3	0.999999919643743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN1324_c0_g1_5354_TPlot.pdf
TRINITY_DN13251_c0_g1:2148	si_a78	TRINITY_DN13251_c0_g1	2137	2157	2148	-22.30	-16.60	0.744394618834081	4	1-16,2157-2142;19-21,2139-2137	17-18,2141-2140[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	UUCACAGUGGUGAAAAACAAU&AUUGUUUUUCAUUAUUAAGAA	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN13251_c0_g1_2148_TPlot.pdf
TRINITY_DN13254_c0_g1:1547	si_a784	TRINITY_DN13254_c0_g1	1536	1556	1547	-24.70	-16.40	0.663967611336032	7	3-8,1554-1549;10-20,1547-1537	1-2,1556-1555[UP5];9-9,1548-1548[SIL];21-21,1536-1536[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UAAAUAGAAAAGAAGAAGAAG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13254_c0_g1_1547_TPlot.pdf
TRINITY_DN13254_c0_g1:1548	si_a783	TRINITY_DN13254_c0_g1	1537	1557	1548	-24.70	-16.40	0.663967611336032	8	4-9,1554-1549;11-21,1547-1537	1-3,1557-1555[UP5];10-10,1548-1548[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAAUAGAAAAGAAGAAGAAGA&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN13254_c0_g1_1548_TPlot.pdf
TRINITY_DN1325_c0_g1:1261	si_s297	TRINITY_DN1325_c0_g1	1250	1270	1261	-29.80	-20.70	0.694630872483221	6	1-13,1270-1258;15-16,1256-1255	14-14,1257-1257[SIL];17-21,1254-1250[UP3]	.....((.(((((((((((((&))))))))))))).)).....	AUCCGUCUCAAUUCCAAUCGA&UCGAUUGGAAUUGCGAAAAUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN1325_c0_g1_1261_TPlot.pdf
TRINITY_DN1325_c0_g1:838	si_a92	TRINITY_DN1325_c0_g1	825	845	838	-28.60	-18.70	0.653846153846154	8	1-6,845-840;9-17,839-831;18-21,828-825	7-8,x-x[BULq];x-x,830-829[BULt]	((((..(((((((((--((((((&))))))..)))))))))--))))	AUCUGAUCGUUGCCU--UCUUGA&UUAAGAAAAGGUAACGA--AGAU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN1325_c0_g1_838_TPlot.pdf
TRINITY_DN13261_c0_g1:1175	si_a624	TRINITY_DN13261_c0_g1	1164	1188	1175	-32.30	-21.94	0.679256965944273	18.5	1-7,1188-1182;11-19,1174-1166	8-10,1181-1175[AILt];20-21,1165-1164[UP3]	..(((((((((.......(((((((&)))))))----...)))))))))..	ACGUCGACAUGUUUUGCUCGCCUGG&CUAGGCG----UAUUAUGUCGAUUU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN13261_c0_g1_1175_TPlot.pdf
TRINITY_DN1326_c0_g1:2645	si_s88	TRINITY_DN1326_c0_g1	2635	2655	2645	-34.80	-25.20	0.724137931034483	5	1-6,2655-2650;7-16,2648-2639;18-21,2638-2635	x-x,2649-2649[BULt];17-17,x-x[BULq]	((((-((((((((((.((((((&))))))-)))))))))).))))	GGAG-GAGGAGGAAGAAAAGGA&UCCUUU-CUUCUUCUUCGCUUC	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1326_c0_g1_2645_TPlot.pdf
TRINITY_DN13278_c0_g1:145	si_a406	TRINITY_DN13278_c0_g1	134	154	145	-19.80	-13.40	0.676767676767677	9.5	1-16,154-139	17-21,138-134[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUCACAUGUAAAUGAAGCAGU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN13278_c0_g1_145_TPlot.pdf
TRINITY_DN13278_c0_g1:146	si_a405	TRINITY_DN13278_c0_g1	135	155	146	-19.80	-13.60	0.686868686868687	9.5	2-17,154-139	1-1,155-155[UP5];18-21,138-135[UP3]	....((((((((((((((((.&.))))))))))))))))....	UCACAUGUAAAUGAAGCAGUA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN13278_c0_g1_146_TPlot.pdf
TRINITY_DN1327_c0_g2:1147	si_a790	TRINITY_DN1327_c0_g2	1136	1158	1147	-25.80	-17.90	0.693798449612403	7	1-5,1158-1154;6-12,1151-1145;14-21,1143-1136	x-x,1153-1152[BULt];13-13,1144-1144[SIL]	((((((((.(((((((..(((((&)))))--))))))).))))))))	GGUUGGGAUAUAGAAAGUAAUGG&CUAUU--UUUCUAUUUUCCAAUC	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN1327_c0_g2_1147_TPlot.pdf
TRINITY_DN13280_c0_g1:1337	si_s46	TRINITY_DN13280_c0_g1	1326	1346	1337	-25.00	-18.20	0.728	5.5	3-14,1344-1333;16-21,1331-1326	1-2,1346-1345[UP5];15-15,1332-1332[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UGACUUUAAGUCCAAUUAUAA&UAAUAAUUGGAUUUCAAGUUA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN13280_c0_g1_1337_TPlot.pdf
TRINITY_DN13280_c0_g1:896	si_a70	TRINITY_DN13280_c0_g1	884	907	896	-23.90	-15.60	0.652719665271967	8.5	1-6,907-902;7-11,899-895;12-21,893-884	x-x,901-900[BULt];x-x,894-894[BULt]	((((((((((.(((((..((((((&))))))--)))))-))))))))))	GGUGAAAAGCUAAUUUCCGAAGGA&UCUUUC--AAAUU-GUUUUUCAUU	4	0.99999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN13280_c0_g1_896_TPlot.pdf
TRINITY_DN13281_c0_g1:1649	si_s805	TRINITY_DN13281_c0_g1	1636	1658	1649	-28.60	-19.10	0.667832167832168	9.5	2-11,1657-1648;12-15,1646-1643;16-20,1641-1637	1-1,1658-1658[UP5];x-x,1647-1647[BULt];x-x,1642-1642[BULt];21-21,1636-1636[UP3]	.(((((.((((.((((((((((.&.))))))))))-))))-))))).	UGAAAGCGGUGUGCGAAGGUGAC&UUUAUCUUCGU-UACC-UUUUCU	3	0.999999999266631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN13281_c0_g1_1649_TPlot.pdf
TRINITY_DN13281_c0_g1:1650	si_s804	TRINITY_DN13281_c0_g1	1637	1659	1650	-27.90	-18.70	0.670250896057348	10	3-12,1657-1648;13-16,1646-1643;17-21,1641-1637	1-2,1659-1658[UP5];x-x,1647-1647[BULt];x-x,1642-1642[BULt]	(((((.((((.((((((((((..&..))))))))))-))))-)))))	GAAAGCGGUGUGCGAAGGUGACA&UUUUAUCUUCGU-UACC-UUUUC	4	0.999999999692191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN13281_c0_g1_1650_TPlot.pdf
TRINITY_DN13287_c0_g1:396	si_a708	TRINITY_DN13287_c0_g1	385	405	396	-28.00	-18.40	0.657142857142857	10.5	6-20,400-386	1-5,405-401[UP5];21-21,385-385[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UACGGUUAUUUUGGAAGAGAG&GUACAUUCCAAAAUAAUCGUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a708_TRINITY_DN13287_c0_g1_396_TPlot.pdf
TRINITY_DN13298_c0_g1:1013	si_a803	TRINITY_DN13298_c0_g1	1002	1025	1013	-36.30	-25.10	0.691460055096419	10	2-6,1024-1020;7-10,1016-1013;12-21,1011-1002	1-1,1025-1025[UP5];x-x,1019-1017[BULt];11-11,1012-1012[SIL]	((((((((((.((((...(((((.&.)))))---)))).))))))))))	CUUCUUCGCUCUGGAAGAUUGGAU&UUCCAA---UCCGAAGCGAAGAAG	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a803_TRINITY_DN13298_c0_g1_1013_TPlot.pdf
TRINITY_DN13298_c0_g1:1241	si_a319	TRINITY_DN13298_c0_g1	1230	1250	1241	-22.40	-15.10	0.674107142857143	9	1-11,1250-1240;14-20,1237-1231	12-13,1239-1238[SIL];21-21,1230-1230[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	CAUGAAGACUUUGUGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999999707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN13298_c0_g1_1241_TPlot.pdf
TRINITY_DN13298_c0_g1:1242	si_a318	TRINITY_DN13298_c0_g1	1231	1251	1242	-22.50	-15.10	0.671111111111111	8	2-12,1250-1240;15-21,1237-1231	1-1,1251-1251[UP5];13-14,1239-1238[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AUGAAGACUUUGUGGAUGGAA&AUUUAUCCAUGAUUUUUUUAU	2	0.999999877924283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN13298_c0_g1_1242_TPlot.pdf
TRINITY_DN13298_c0_g1:1279	si_a73	TRINITY_DN13298_c0_g1	1268	1288	1279	-21.90	-15.10	0.689497716894977	8	1-15,1288-1274	16-21,1273-1268[UP3]	......(((((((((((((((&)))))))))))))))......	GAAAAAGAAAAAUAGUUUGAA&UUCAAAUUGUUUUUCAUUAUU	0	0.346722170471303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN13298_c0_g1_1279_TPlot.pdf
TRINITY_DN13298_c0_g1:1280	si_a72	TRINITY_DN13298_c0_g1	1269	1289	1280	-21.90	-15.30	0.698630136986301	8	2-16,1288-1274	1-1,1289-1289[UP5];17-21,1273-1269[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAAAGAAAAAUAGUUUGAAU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999839810467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN13298_c0_g1_1280_TPlot.pdf
TRINITY_DN13298_c0_g1:1281	si_a71	TRINITY_DN13298_c0_g1	1270	1290	1281	-23.30	-15.30	0.656652360515022	9	3-17,1288-1274	1-2,1290-1289[UP5];18-21,1273-1270[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAAGAAAAAUAGUUUGAAUU&CUUUCAAAUUGUUUUUCAUUA	2	0.999999958660166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN13298_c0_g1_1281_TPlot.pdf
TRINITY_DN13298_c0_g1:1907	si_s75	TRINITY_DN13298_c0_g1	1896	1916	1907	-24.00	-15.60	0.65	8	1-13,1916-1904;15-17,1902-1900;20-21,1897-1896	14-14,1903-1903[SIL];18-19,1899-1898[SIL]	((..(((.(((((((((((((&))))))))))))).)))..))	AGUCGGGCGGGAGAGAGAAUA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13298_c0_g1_1907_TPlot.pdf
TRINITY_DN13303_c0_g1:2448	si_s850	TRINITY_DN13303_c0_g1	2437	2460	2448	-41.50	-27.90	0.672289156626506	13	3-5,2458-2456;7-9,2453-2451;10-21,2448-2437	1-2,2460-2459[UP5];6-6,2455-2454[AILt];x-x,2450-2449[BULt]	((((((((((((..(((..(((..&..)))-.)))--))))))))))))	GGUCUAGGAGUUUUGACGAUGCGU&AAGCG-AGUC--GACUCCUAGACC	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s850_TRINITY_DN13303_c0_g1_2448_TPlot.pdf
TRINITY_DN13303_c1_g3:81	si_a191	TRINITY_DN13303_c1_g3	67	90	81	-32.00	-21.20	0.6625	14.5	3-12,88-79;13-17,75-71	1-2,90-89[UP5];x-x,78-76[BULt];18-21,70-67[UP3]	....(((((...((((((((((..&..))))))))))---)))))....	AGGGGGUGAAAUACAGGGAGAGUA&AUCUUUCCCUGU---UCACUAAUA	2	0.986177743532797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN13303_c1_g3_81_TPlot.pdf
TRINITY_DN13303_c1_g3:84	si_a188	TRINITY_DN13303_c1_g3	70	92	84	-32.00	-22.50	0.703125	7.5	1-4,92-89;6-15,88-79;16-20,75-71	5-5,x-x[BULq];x-x,78-76[BULt];21-21,70-70[UP3]	.(((((...((((((((((-((((&)))).))))))))))---))))).	GGGUGAAAUACAGGGAGAG-UAUU&AAUAUCUUUCCCUGU---UCACUA	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN13303_c1_g3_84_TPlot.pdf
TRINITY_DN13303_c6_g1:1087	si_s78	TRINITY_DN13303_c6_g1	1078	1096	1087	-26.20	-17.30	0.66030534351145	5	1-12,1096-1085;15-20,1084-1079	13-14,x-x[BULq];21-21,1078-1078[UP3]	.((((((--((((((((((((&))))))))))))..)))))).	CGAAGAA--GAGAGAAGAAAA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13303_c6_g1_1087_TPlot.pdf
TRINITY_DN13303_c6_g1:1089	si_s81	TRINITY_DN13303_c6_g1	1078	1096	1089	-28.90	-19.60	0.678200692041523	6	1-7,1096-1090;10-20,1089-1079	8-9,x-x[BULq];21-21,1078-1078[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	CGAAGAAGAGAG--AAGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN13303_c6_g1_1089_TPlot.pdf
TRINITY_DN1330_c0_g1:2714	si_s86	TRINITY_DN1330_c0_g1	2703	2723	2714	-32.90	-25.20	0.765957446808511	7.5	3-18,2721-2706	1-2,2723-2722[UP5];19-21,2705-2703[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAGAGGAAGAGGAAAGGAUA&UUUCCUUUCUUCUUCUUCGCU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1330_c0_g1_2714_TPlot.pdf
TRINITY_DN1330_c0_g1:2795	si_s197	TRINITY_DN1330_c0_g1	2784	2804	2795	-29.20	-19.40	0.664383561643836	12.5	5-12,2800-2793;14-19,2791-2786	1-4,2804-2801[UP5];13-13,2792-2792[SIL];20-21,2785-2784[UP3]	..((((((.((((((((....&....)))))))).))))))..	UCCUGGUGGAUUCCAGGCCUG&UUAUUUUGGAAUGUACCAGUU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN1330_c0_g1_2795_TPlot.pdf
TRINITY_DN1330_c0_g3:1656	si_a406	TRINITY_DN1330_c0_g3	1645	1665	1656	-19.80	-14.50	0.732323232323232	6	2-5,1664-1661;7-21,1659-1645	1-1,1665-1665[UP5];6-6,1660-1660[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	UUUAAAUAUAAGCAGUAUAAA&AUUGUUUUGUUUAUAUUUAAA	4	0.999998541607459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1330_c0_g3_1656_TPlot.pdf
TRINITY_DN1330_c0_g3:1733	si_a406	TRINITY_DN1330_c0_g3	1717	1742	1733	-19.80	-13.20	0.666666666666667	14	1-11,1742-1732;12-19,1726-1719	x-x,1731-1727[BULt];20-21,1718-1717[UP3]	..((((((((.....(((((((((((&)))))))))))-----))))))))..	AAUAGGUAUAACUUCAACAAAACAGU&AUUGUUUUGUU-----UAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1330_c0_g3_1733_TPlot.pdf
TRINITY_DN1330_c0_g3:518	si_a885	TRINITY_DN1330_c0_g3	507	527	518	-25.60	-17.60	0.6875	8	2-5,526-523;7-17,521-511	1-1,527-527[UP5];6-6,522-522[SIL];18-21,510-507[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	CCUUUUACUAUGUUGUUUGCG&UGCAAUCAAUAUAGUAAUAAU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN1330_c0_g3_518_TPlot.pdf
TRINITY_DN1330_c0_g6:157	si_s579	TRINITY_DN1330_c0_g6	146	166	157	-26.70	-18.40	0.689138576779026	5.5	1-4,166-163;7-21,160-146	5-6,162-161[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	UAUCUGUGAUUUUUUCUUUCU&GGAAUAAAAAAAUCAUGGAUA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN1330_c0_g6_157_TPlot.pdf
TRINITY_DN1330_c0_g6:561	si_s436	TRINITY_DN1330_c0_g6	550	570	561	-19.60	-13.40	0.683673469387755	8	2-15,569-556	1-1,570-570[UP5];16-21,555-550[UP3]	......((((((((((((((.&.))))))))))))))......	AAACGUUAAUGUGUAAUUAUG&AAUAAUUACAUAUUAUAUAUA	3	0.999816563307628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN1330_c0_g6_561_TPlot.pdf
TRINITY_DN1330_c0_g6:565	si_s432	TRINITY_DN1330_c0_g6	554	573	565	-21.30	-14.20	0.666666666666667	5.5	2-5,572-569;7-19,568-556	1-1,573-573[UP5];6-6,x-x[BULq];20-21,555-554[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	GUUAAUGUGUAAUUA-UGUUU&UAACAAUAAUUACAUAUUAUA	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN1330_c0_g6_565_TPlot.pdf
TRINITY_DN1330_c0_g6:566	si_s431	TRINITY_DN1330_c0_g6	555	574	566	-21.10	-14.20	0.672985781990521	6.5	3-6,572-569;8-20,568-556	1-2,574-573[UP5];7-7,x-x[BULq];21-21,555-555[UP3]	.(((((((((((((-((((..&..)))).))))))))))))).	UUAAUGUGUAAUUA-UGUUUG&AUAACAAUAAUUACAUAUUAU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN1330_c0_g6_566_TPlot.pdf
TRINITY_DN13310_c0_g1:410	si_a823	TRINITY_DN13310_c0_g1	399	420	410	-25.50	-17.10	0.670588235294118	9	1-6,420-415;7-14,413-406	x-x,414-414[BULt];15-21,405-399[UP3]	.......((((((((.((((((&))))))-)))))))).......	GAAAAGCUCUUUCCUCUUCUUC&GAAGAA-AGGAAAGAAAAAAAA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN13310_c0_g1_410_TPlot.pdf
TRINITY_DN13310_c0_g1:412	si_a821	TRINITY_DN13310_c0_g1	401	422	412	-26.20	-17.30	0.66030534351145	10	3-8,420-415;9-16,413-406	1-2,422-421[UP5];x-x,414-414[BULt];17-21,405-401[UP3]	.....((((((((.((((((..&..))))))-)))))))).....	AAAGCUCUUUCCUCUUCUUCCU&AAGAAGAA-AGGAAAGAAAAAA	1	0.0803614762591305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN13310_c0_g1_412_TPlot.pdf
TRINITY_DN13311_c0_g1:1230	si_a502	TRINITY_DN13311_c0_g1	1220	1242	1230	-32.10	-22.10	0.688473520249221	10	1-7,1242-1236;8-15,1232-1225;17-19,1224-1222	x-x,1235-1233[BULt];16-16,x-x[BULq];20-21,1221-1220[UP3]	..(((-((((((((...(((((((&)))))))---)))))))).)))..	AGUCC-AGGAAGACACAGAGAAAC&GUUUUUC---GUCUUCCUUGGAAU	4	0.999999794783401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN13311_c0_g1_1230_TPlot.pdf
TRINITY_DN13311_c0_g1:1231	si_a501	TRINITY_DN13311_c0_g1	1221	1243	1231	-33.50	-22.20	0.662686567164179	10	2-8,1242-1236;9-16,1232-1225;18-20,1224-1222	1-1,1243-1243[UP5];x-x,1235-1233[BULt];17-17,x-x[BULq];21-21,1221-1221[UP3]	.(((-((((((((...(((((((.&.)))))))---)))))))).))).	GUCC-AGGAAGACACAGAGAAACA&CGUUUUUC---GUCUUCCUUGGAA	3	0.999999999915938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN13311_c0_g1_1231_TPlot.pdf
TRINITY_DN13311_c0_g1:1336	si_s73	TRINITY_DN13311_c0_g1	1325	1345	1336	-24.00	-16.20	0.675	6.5	1-12,1345-1334;14-18,1332-1328	13-13,1333-1333[SIL];19-21,1327-1325[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UACGGAAGAAAAGAAAGUAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13311_c0_g1_1336_TPlot.pdf
TRINITY_DN13311_c0_g1:1337	si_s72	TRINITY_DN13311_c0_g1	1326	1346	1337	-24.10	-16.60	0.688796680497925	6	1-13,1346-1334;15-19,1332-1328	14-14,1333-1333[SIL];20-21,1327-1326[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	ACGGAAGAAAAGAAAGUAGAG&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13311_c0_g1_1337_TPlot.pdf
TRINITY_DN13311_c0_g1:1338	si_s71	TRINITY_DN13311_c0_g1	1327	1347	1338	-25.70	-16.80	0.653696498054475	6.5	2-14,1346-1334;16-20,1332-1328	1-1,1347-1347[UP5];15-15,1333-1333[SIL];21-21,1327-1327[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	CGGAAGAAAAGAAAGUAGAGU&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13311_c0_g1_1338_TPlot.pdf
TRINITY_DN13311_c0_g1:1340	si_s69	TRINITY_DN13311_c0_g1	1328	1349	1340	-23.40	-15.60	0.666666666666667	9	4-16,1346-1334;17-21,1332-1328	1-3,1349-1347[UP5];x-x,1333-1333[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GGAAGAAAAGAAAGUAGAGUCU&AACUUCUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN13311_c0_g1_1340_TPlot.pdf
TRINITY_DN13311_c0_g1:1508	si_a785	TRINITY_DN13311_c0_g1	1499	1517	1508	-25.90	-18.70	0.722007722007722	6	1-10,1517-1508;13-20,1507-1500	11-12,x-x[BULq];21-21,1499-1499[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	AGAAGUAGA--AAUAGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999998813333396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN13311_c0_g1_1508_TPlot.pdf
TRINITY_DN13311_c0_g1:1509	si_a784	TRINITY_DN13311_c0_g1	1500	1518	1509	-24.70	-18.50	0.748987854251012	5	2-11,1517-1508;14-21,1507-1500	1-1,1518-1518[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	GAAGUAGA--AAUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13311_c0_g1_1509_TPlot.pdf
TRINITY_DN13311_c0_g1:1510	si_a783	TRINITY_DN13311_c0_g1	1501	1519	1510	-24.70	-17.40	0.704453441295547	5.5	3-12,1517-1508;15-21,1507-1501	1-2,1519-1518[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	AAGUAGA--AAUAGAAGAGAU&AACUCUUCUAUUUUUCUAUUU	2	0.999953766751949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN13311_c0_g1_1510_TPlot.pdf
TRINITY_DN13311_c0_g1:1511	si_a782	TRINITY_DN13311_c0_g1	1502	1521	1511	-26.40	-17.50	0.662878787878788	4.5	1-3,1521-1519;4-13,1517-1508;16-21,1507-1502	x-x,1518-1518[BULt];14-15,x-x[BULq]	((((((--((((((((((.(((&)))-))))))))))..))))))	AGUAGA--AAUAGAAGAGAUUG&CAA-CUCUUCUAUUUUUCUAUU	2	0.999991491863399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN13311_c0_g1_1511_TPlot.pdf
TRINITY_DN13311_c0_g1:1720	si_a763	TRINITY_DN13311_c0_g1	1709	1729	1720	-28.80	-19.00	0.659722222222222	6.5	1-8,1729-1722;10-21,1720-1709	9-9,1721-1721[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UGAAUCAGUCGAUAAUUUAAA&UUUGGGUUUUUGAUUGAUUCA	3	0.999999999733478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN13311_c0_g1_1720_TPlot.pdf
TRINITY_DN13311_c0_g1:2041	si_a400	TRINITY_DN13311_c0_g1	2030	2050	2041	-22.80	-14.90	0.653508771929825	9	2-17,2049-2034	1-1,2050-2050[UP5];18-21,2033-2030[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGACGGCAAGGCAAUUUUAUC&UAUAGAAUUGUUUUGUUUAUA	3	0.999999999964799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN13311_c0_g1_2041_TPlot.pdf
TRINITY_DN13311_c0_g1:2043	si_a398	TRINITY_DN13311_c0_g1	2032	2052	2043	-22.40	-14.90	0.665178571428572	10	4-19,2049-2034	1-3,2052-2050[UP5];20-21,2033-2032[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACGGCAAGGCAAUUUUAUCUA&AAUAUAGAAUUGUUUUGUUUA	3	0.999999998480056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN13311_c0_g1_2043_TPlot.pdf
TRINITY_DN13311_c0_g1:3038	si_a118	TRINITY_DN13311_c0_g1	3026	3047	3038	-30.70	-20.40	0.664495114006515	7	3-13,3045-3035;15-20,3032-3027	1-2,3047-3046[UP5];14-14,3034-3033[AILt];21-21,3026-3026[UP3]	.((((((..(((((((((((..&..)))))))))))-.)))))).	UUUGUUAGAGAAACAAGCUCCC&ACGAGCUUGUUUU-AUAGCAAU	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN13311_c0_g1_3038_TPlot.pdf
TRINITY_DN13311_c0_g1:9255	si_s83	TRINITY_DN13311_c0_g1	9244	9264	9255	-30.90	-21.40	0.692556634304207	5.5	1-7,9264-9258;9-20,9256-9245	8-8,9257-9257[SIL];21-21,9244-9244[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AAAGAAGAAGAAAAGAGAGGG&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN13311_c0_g1_9255_TPlot.pdf
TRINITY_DN13311_c0_g1:9256	si_s82	TRINITY_DN13311_c0_g1	9245	9265	9256	-28.90	-21.50	0.743944636678201	6	2-8,9264-9258;10-21,9256-9245	1-1,9265-9265[UP5];9-9,9257-9257[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	AAGAAGAAGAAAAGAGAGGGC&UUUCUUUCCUUUCUUCUUCUU	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN13311_c0_g1_9256_TPlot.pdf
TRINITY_DN13311_c0_g1:9257	si_s81	TRINITY_DN13311_c0_g1	9246	9266	9257	-28.90	-20.60	0.71280276816609	8	3-9,9264-9258;11-21,9256-9246	1-2,9266-9265[UP5];10-10,9257-9257[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AGAAGAAGAAAAGAGAGGGCG&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN13311_c0_g1_9257_TPlot.pdf
TRINITY_DN13311_c0_g1:9258	si_s80	TRINITY_DN13311_c0_g1	9247	9267	9258	-28.20	-19.30	0.684397163120567	10	4-10,9264-9258;12-21,9256-9247	1-3,9267-9265[UP5];11-11,9257-9257[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GAAGAAGAAAAGAGAGGGCGA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN13311_c0_g1_9258_TPlot.pdf
TRINITY_DN13311_c0_g1:9264	si_s809	TRINITY_DN13311_c0_g1	9253	9273	9264	-28.50	-19.50	0.684210526315789	9.5	2-8,9272-9266;10-18,9264-9256	1-1,9273-9273[UP5];9-9,9265-9265[SIL];19-21,9255-9253[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GAAAAGAGAGGGCGAUGAAGG&UCUUCGUUACCUUUUCUUAAU	3	0.999997540575938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN13311_c0_g1_9264_TPlot.pdf
TRINITY_DN13311_c0_g1:9265	si_s808	TRINITY_DN13311_c0_g1	9254	9274	9265	-28.60	-19.50	0.681818181818182	10	3-9,9272-9266;11-19,9264-9256	1-2,9274-9273[UP5];10-10,9265-9265[SIL];20-21,9255-9254[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AAAAGAGAGGGCGAUGAAGGA&AUCUUCGUUACCUUUUCUUAA	3	0.999999919643743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN13311_c0_g1_9265_TPlot.pdf
TRINITY_DN13311_c0_g1:9266	si_s807	TRINITY_DN13311_c0_g1	9255	9275	9266	-28.90	-19.50	0.674740484429066	11	4-10,9272-9266;12-20,9264-9256	1-3,9275-9273[UP5];11-11,9265-9265[SIL];21-21,9255-9255[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AAAGAGAGGGCGAUGAAGGAG&UAUCUUCGUUACCUUUUCUUA	3	0.99999996635098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN13311_c0_g1_9266_TPlot.pdf
TRINITY_DN13311_c0_g1:9271	si_a494	TRINITY_DN13311_c0_g1	9260	9280	9271	-29.50	-20.60	0.698305084745763	7	1-5,9280-9276;7-8,9274-9273;10-12,9271-9269;14-21,9267-9260	6-6,9275-9275[SIL];9-9,9272-9272[SIL];13-13,9268-9268[SIL]	((((((((.(((.((.(((((&))))).)).))).))))))))	GAGGGCGAUGAAGGAGAUAUU&AAUAUGUCGUUUUUCGUCUUC	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN13311_c0_g1_9271_TPlot.pdf
TRINITY_DN13311_c0_g1:9456	si_s77	TRINITY_DN13311_c0_g1	9446	9465	9456	-25.50	-17.10	0.670588235294118	4	1-14,9465-9452;17-20,9450-9447	15-16,9451-9451[AILq];21-21,9446-9446[UP3]	.((((.-((((((((((((((&))))))))))))))..)))).	CAAGAC-GGAAAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN13311_c0_g1_9456_TPlot.pdf
TRINITY_DN13311_c0_g1:9457	si_s76	TRINITY_DN13311_c0_g1	9447	9466	9457	-23.60	-17.10	0.724576271186441	4	2-15,9465-9452;18-21,9450-9447	1-1,9466-9466[UP5];16-17,9451-9451[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	AAGAC-GGAAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13311_c0_g1_9457_TPlot.pdf
TRINITY_DN13311_c0_g1:9458	si_s75	TRINITY_DN13311_c0_g1	9448	9467	9458	-24.00	-16.30	0.679166666666667	6	3-16,9465-9452;19-21,9450-9448	1-2,9467-9466[UP5];17-18,9451-9451[AILq]	(((.-((((((((((((((..&..))))))))))))))..)))	AGAC-GGAAAGAAAAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13311_c0_g1_9458_TPlot.pdf
TRINITY_DN13311_c0_g1:9460	si_s73	TRINITY_DN13311_c0_g1	9449	9470	9460	-24.00	-16.60	0.691666666666667	8	1-3,9470-9468;5-18,9465-9452	4-4,9467-9466[AILt];19-21,9451-9449[UP3]	...((((((((((((((..(((&)))-.))))))))))))))...	GACGGAAAGAAAAAGAAAAAGA&UCU-AUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13311_c0_g1_9460_TPlot.pdf
TRINITY_DN13312_c0_g2:1069	si_a637	TRINITY_DN13312_c0_g2	1058	1078	1069	-25.80	-18.30	0.709302325581395	7.5	1-16,1078-1063	17-21,1062-1058[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUGAAACUUAAAGAAAUUGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN13312_c0_g2_1069_TPlot.pdf
TRINITY_DN13312_c0_g2:1073	si_a633	TRINITY_DN13312_c0_g2	1062	1082	1073	-26.40	-18.40	0.696969696969697	9	4-20,1079-1063	1-3,1082-1080[UP5];21-21,1062-1062[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AACUUAAAGAAAUUGACGGAA&UUAUGUCGAUUUUUUUGAGUA	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN13312_c0_g2_1073_TPlot.pdf
TRINITY_DN13312_c0_g2:1074	si_a632	TRINITY_DN13312_c0_g2	1063	1083	1074	-26.10	-18.10	0.693486590038314	10	5-21,1079-1063	1-4,1083-1080[UP5]	(((((((((((((((((....&....)))))))))))))))))	ACUUAAAGAAAUUGACGGAAG&AUUAUGUCGAUUUUUUUGAGU	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN13312_c0_g2_1074_TPlot.pdf
TRINITY_DN13313_c0_g1:2541	si_s71	TRINITY_DN13313_c0_g1	2531	2551	2541	-25.70	-18.00	0.700389105058366	8	1-8,2551-2544;10-17,2541-2534;19-21,2533-2531	9-9,2543-2542[AILt];18-18,x-x[BULq]	(((-((((((((..((((((((&))))))))-.)))))))).)))	AGG-AAGAAGAAUCGGUAGAAG&CUUCUAUU-UUUUUUCUUUCCU	2	0.999999999905989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13313_c0_g1_2541_TPlot.pdf
TRINITY_DN1331_c0_g1:1090	si_s79	TRINITY_DN1331_c0_g1	1079	1099	1090	-26.20	-17.10	0.652671755725191	11	3-16,1097-1084	1-2,1099-1098[UP5];17-21,1083-1079[UP3]	.....((((((((((((((..&..)))))))))))))).....	AACAUGGAGGGAGAGGAAACU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1331_c0_g1_1090_TPlot.pdf
TRINITY_DN1331_c0_g1:1091	si_s78	TRINITY_DN1331_c0_g1	1080	1100	1091	-26.20	-17.10	0.652671755725191	12	4-17,1097-1084	1-3,1100-1098[UP5];18-21,1083-1080[UP3]	....((((((((((((((...&...))))))))))))))....	ACAUGGAGGGAGAGGAAACUU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1331_c0_g1_1091_TPlot.pdf
TRINITY_DN1331_c0_g1:1093	si_s76	TRINITY_DN1331_c0_g1	1082	1102	1093	-23.60	-17.10	0.724576271186441	14	6-19,1097-1084	1-5,1102-1098[UP5];20-21,1083-1082[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUGGAGGGAGAGGAAACUUUC&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1331_c0_g1_1093_TPlot.pdf
TRINITY_DN1331_c0_g1:1094	si_s75	TRINITY_DN1331_c0_g1	1083	1103	1094	-24.00	-17.10	0.7125	14.5	7-20,1097-1084	1-6,1103-1098[UP5];21-21,1083-1083[UP3]	.((((((((((((((......&......)))))))))))))).	UGGAGGGAGAGGAAACUUUCG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1331_c0_g1_1094_TPlot.pdf
TRINITY_DN1331_c0_g1:1095	si_s74	TRINITY_DN1331_c0_g1	1084	1104	1095	-25.00	-16.70	0.668	15.5	8-21,1097-1084	1-7,1104-1098[UP5]	((((((((((((((.......&.......))))))))))))))	GGAGGGAGAGGAAACUUUCGA&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1331_c0_g1_1095_TPlot.pdf
TRINITY_DN1331_c0_g1:1702	si_s76	TRINITY_DN1331_c0_g1	1691	1711	1702	-23.60	-16.50	0.699152542372881	9.5	1-9,1711-1703;11-20,1701-1692	10-10,1702-1702[SIL];21-21,1691-1691[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CAGAAGGGAGGCGGAAAGAGU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1331_c0_g1_1702_TPlot.pdf
TRINITY_DN13325_c0_g2:206	si_s73	TRINITY_DN13325_c0_g2	194	215	206	-24.00	-17.00	0.708333333333333	7.5	2-15,214-201;16-19,199-196	1-1,215-215[UP5];x-x,200-200[BULt];20-21,195-194[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	UUGGGACAAGAAAAAAGGUGGU&UCUAUUUUUUUUCUU-UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13325_c0_g2_206_TPlot.pdf
TRINITY_DN13325_c0_g2:221	si_s741	TRINITY_DN13325_c0_g2	209	233	221	-33.80	-22.00	0.650887573964497	12	1-4,233-230;5-13,226-218;14-17,216-213	x-x,229-227[BULt];x-x,217-217[BULt];18-21,212-209[UP3]	....((((.(((((((((...((((&))))---)))))))))-))))....	AGGUGGUCAAGUCUAUUCCAUACCC&GGGU---GAAUAGAUU-GACCUUAA	1	0.0459713826781006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN13325_c0_g2_221_TPlot.pdf
TRINITY_DN13326_c1_g1:1952	si_a220	TRINITY_DN13326_c1_g1	1940	1961	1952	-25.10	-18.60	0.741035856573705	6	2-14,1960-1948;17-21,1944-1940	1-1,1961-1961[UP5];15-16,1947-1945[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	UAUGGUUUGCGUGAGUUUAAUG&AAUUAAACUCAUGU-UUCUAUA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN13326_c1_g1_1952_TPlot.pdf
TRINITY_DN1332_c0_g1:2198	si_a16	TRINITY_DN1332_c0_g1	2187	2207	2198	-26.30	-20.30	0.771863117870722	5	1-12,2207-2196;14-16,2194-2192;18-21,2190-2187	13-13,2195-2195[SIL];17-17,2191-2191[SIL]	((((.(((.((((((((((((&)))))))))))).))).))))	GCUAUAAGCGAAUGGGCUUUC&GAAAGCCUAUUUAUUUUUAGU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1332_c0_g1_2198_TPlot.pdf
TRINITY_DN1332_c0_g1:2199	si_a15	TRINITY_DN1332_c0_g1	2188	2208	2199	-26.20	-20.30	0.774809160305344	4	1-13,2208-2196;15-17,2194-2192;19-21,2190-2188	14-14,2195-2195[SIL];18-18,2191-2191[SIL]	(((.(((.(((((((((((((&))))))))))))).))).)))	CUAUAAGCGAAUGGGCUUUCU&AGAAAGCCUAUUUAUUUUUAG	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN1332_c0_g1_2199_TPlot.pdf
TRINITY_DN1332_c0_g1:2202	si_a12	TRINITY_DN1332_c0_g1	2191	2211	2202	-26.80	-18.30	0.682835820895522	11.5	4-16,2208-2196	1-3,2211-2209[UP5];17-21,2195-2191[UP3]	.....(((((((((((((...&...))))))))))))).....	UAAGCGAAUGGGCUUUCUAUC&AAGAGAAAGCCUAUUUAUUUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN1332_c0_g1_2202_TPlot.pdf
TRINITY_DN1332_c0_g1:2203	si_a11	TRINITY_DN1332_c0_g1	2192	2216	2203	-28.80	-21.40	0.743055555555555	13	1-7,2216-2210;8-17,2205-2196	x-x,2209-2206[BULt];18-21,2195-2192[UP3]	....((((((((((....(((((((&)))))))----))))))))))....	AAGCGAAUGGGCUUUCUAUCUCUUC&GAAGAGA----AAGCCUAUUUAUUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a11_TRINITY_DN1332_c0_g1_2203_TPlot.pdf
TRINITY_DN1332_c0_g1:2204	si_a10	TRINITY_DN1332_c0_g1	2193	2217	2204	-29.50	-22.20	0.752542372881356	12	1-8,2217-2210;9-18,2205-2196	x-x,2209-2206[BULt];19-21,2195-2193[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	AGCGAAUGGGCUUUCUAUCUCUUCA&UGAAGAGA----AAGCCUAUUUAUU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN1332_c0_g1_2204_TPlot.pdf
TRINITY_DN1332_c0_g1:2205	si_a9	TRINITY_DN1332_c0_g1	2194	2218	2205	-29.60	-22.40	0.756756756756757	12	2-9,2217-2210;10-19,2205-2196	1-1,2218-2218[UP5];x-x,2209-2206[BULt];20-21,2195-2194[UP3]	..((((((((((....((((((((.&.))))))))----))))))))))..	GCGAAUGGGCUUUCUAUCUCUUCAU&UUGAAGAGA----AAGCCUAUUUAU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN1332_c0_g1_2205_TPlot.pdf
TRINITY_DN1332_c0_g1:2210	si_a8	TRINITY_DN1332_c0_g1	2195	2219	2210	-29.50	-22.40	0.759322033898305	13	3-10,2217-2210;11-20,2205-2196	1-2,2219-2218[UP5];x-x,2209-2206[BULt];21-21,2195-2195[UP3]	.((((((((((....((((((((..&..))))))))----)))))))))).	CGAAUGGGCUUUCUAUCUCUUCAUG&AUUGAAGAGA----AAGCCUAUUUA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN1332_c0_g1_2210_TPlot.pdf
TRINITY_DN1332_c0_g1:2211	si_a7	TRINITY_DN1332_c0_g1	2196	2220	2211	-29.10	-22.20	0.762886597938144	14	4-11,2217-2210;12-21,2205-2196	1-3,2220-2218[UP5];x-x,2209-2206[BULt]	((((((((((....((((((((...&...))))))))----))))))))))	GAAUGGGCUUUCUAUCUCUUCAUGA&AAUUGAAGAGA----AAGCCUAUUU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN1332_c0_g1_2211_TPlot.pdf
TRINITY_DN1332_c0_g1:2212	si_a6	TRINITY_DN1332_c0_g1	2197	2221	2212	-29.10	-21.00	0.721649484536082	15.5	5-12,2217-2210;13-21,2205-2197	1-4,2221-2218[UP5];x-x,2209-2206[BULt]	(((((((((....((((((((....&....))))))))----)))))))))	AAUGGGCUUUCUAUCUCUUCAUGAU&AAAUUGAAGAGA----AAGCCUAUU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN1332_c0_g1_2212_TPlot.pdf
TRINITY_DN1332_c0_g1:2373	si_s216	TRINITY_DN1332_c0_g1	2362	2384	2373	-35.80	-24.08	0.672625698324022	13.5	1-9,2384-2376;12-20,2371-2363	10-11,2375-2372[AILt];21-21,2362-2362[UP3]	.(((((((((....(((((((((&)))))))))--..))))))))).	CUCACGUGGUGUACUGGGCGCAA&UUGUGUUCG--AAACCGCGUGAA	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN1332_c0_g1_2373_TPlot.pdf
TRINITY_DN1332_c0_g1:2417	si_a260	TRINITY_DN1332_c0_g1	2406	2427	2417	-39.50	-26.20	0.663291139240506	9	1-5,2427-2423;6-13,2421-2414;16-20,2411-2407	x-x,2422-2422[BULt];14-15,2413-2412[SIL];21-21,2406-2406[UP3]	.(((((..((((((((.(((((&)))))-))))))))..))))).	GAGGCGGUUGCUUUCGUGUGCA&UGUAU-CGAGGGCAAACGCCUA	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a260_TRINITY_DN1332_c0_g1_2417_TPlot.pdf
TRINITY_DN1332_c0_g1:2418	si_a259	TRINITY_DN1332_c0_g1	2407	2428	2418	-39.20	-26.20	0.668367346938775	8.5	1-6,2428-2423;7-14,2421-2414;17-21,2411-2407	x-x,2422-2422[BULt];15-16,2413-2412[SIL]	(((((..((((((((.((((((&))))))-))))))))..)))))	AGGCGGUUGCUUUCGUGUGCAG&UUGUAU-CGAGGGCAAACGCCU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN1332_c0_g1_2418_TPlot.pdf
TRINITY_DN1332_c0_g1:2419	si_a258	TRINITY_DN1332_c0_g1	2408	2429	2419	-38.60	-26.20	0.678756476683938	9	1-7,2429-2423;8-15,2421-2414;18-21,2411-2408	x-x,2422-2422[BULt];16-17,2413-2412[SIL]	((((..((((((((.(((((((&)))))))-))))))))..))))	GGCGGUUGCUUUCGUGUGCAGU&AUUGUAU-CGAGGGCAAACGCC	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN1332_c0_g1_2419_TPlot.pdf
TRINITY_DN1332_c0_g1:779	si_a597	TRINITY_DN1332_c0_g1	765	789	779	-34.00	-23.60	0.694117647058824	14	1-4,789-786;5-6,784-783;9-11,780-778;12-21,774-765	x-x,785-785[BULt];7-8,782-781[SIL];x-x,777-775[BULt]	((((((((((...(((..((.((((&))))-))..)))---))))))))))	GGAAUUGCGACUGGGAGGCUGGUCC&GGAC-AGAAUUU---UCGCAAUUCC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a597_TRINITY_DN1332_c0_g1_779_TPlot.pdf
TRINITY_DN1332_c0_g1:827	si_s77	TRINITY_DN1332_c0_g1	816	836	827	-25.50	-17.00	0.666666666666667	8.5	1-9,836-828;11-18,826-819;20-21,817-816	10-10,827-827[SIL];19-19,818-818[SIL]	((.((((((((.(((((((((&))))))))).)))))))).))	GGUGGAGGGAGCGAAGAGAGA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1332_c0_g1_827_TPlot.pdf
TRINITY_DN1332_c0_g1:828	si_s76	TRINITY_DN1332_c0_g1	817	837	828	-23.60	-17.00	0.720338983050847	10	2-10,836-828;12-19,826-819	1-1,837-837[UP5];11-11,827-827[SIL];20-21,818-817[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	GUGGAGGGAGCGAAGAGAGAC&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1332_c0_g1_828_TPlot.pdf
TRINITY_DN1332_c0_g1:831	si_a496	TRINITY_DN1332_c0_g1	821	840	831	-32.40	-23.40	0.722222222222222	6.5	1-6,840-835;8-14,833-827;16-21,826-821	7-7,834-834[SIL];15-15,x-x[BULq]	((((((-(((((((.((((((&)))))).))))))).))))))	AGGGAG-CGAAGAGAGACGUA&UAUGUCGUUUUUCGUCUUCCU	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1332_c0_g1_831_TPlot.pdf
TRINITY_DN1332_c0_g1:832	si_a495	TRINITY_DN1332_c0_g1	822	841	832	-31.90	-22.10	0.692789968652038	7.5	2-7,840-835;9-15,833-827;17-21,826-822	1-1,841-841[UP5];8-8,834-834[SIL];16-16,x-x[BULq]	(((((-(((((((.((((((.&.)))))).))))))).)))))	GGGAG-CGAAGAGAGACGUAG&AUAUGUCGUUUUUCGUCUUCC	2	0.998204808553084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1332_c0_g1_832_TPlot.pdf
TRINITY_DN13330_c0_g1:1095	si_a554	TRINITY_DN13330_c0_g1	1084	1109	1095	-34.40	-23.30	0.677325581395349	17	1-4,1109-1106;7-10,1098-1095;12-21,1093-1084	5-6,1105-1099[AILt];11-11,1094-1094[SIL]	((((((((((.((((.......((((&))))-----..)))).))))))))))	CACGGGGAGAAAAAGUACACGUGUAG&CUAU-----UUCUUUAUCUCCCCGUG	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN13330_c0_g1_1095_TPlot.pdf
TRINITY_DN13336_c0_g2:570	si_a128	TRINITY_DN13336_c0_g2	559	579	570	-23.20	-15.10	0.650862068965517	12	4-15,576-565	1-3,579-577[UP5];16-21,564-559[UP3]	......((((((((((((...&...))))))))))))......	AUACGAUACUAUUGCUGUUAA&UUUAUAGCAAUAGUAAUUAAU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN13336_c0_g2_570_TPlot.pdf
TRINITY_DN13336_c0_g2:571	si_a127	TRINITY_DN13336_c0_g2	560	580	571	-23.10	-15.10	0.653679653679654	13	5-16,576-565	1-4,580-577[UP5];17-21,564-560[UP3]	.....((((((((((((....&....)))))))))))).....	UACGAUACUAUUGCUGUUAAU&UUUUAUAGCAAUAGUAAUUAA	3	0.999989647362308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN13336_c0_g2_571_TPlot.pdf
TRINITY_DN13336_c0_g2:812	si_a422	TRINITY_DN13336_c0_g2	810	821	812	-27.20	-17.70	0.650735294117647	2	11-21,820-810	10-10,821-821[SIL]	(((((((((((.&.)))))))))))	ACGGAUCCUGUC&UUAAAUAAAUAU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN13336_c0_g2_812_TPlot.pdf
TRINITY_DN13336_c0_g2:819	si_a424	TRINITY_DN13336_c0_g2	808	828	819	-28.40	-19.10	0.672535211267606	17.5	9-20,820-809	1-8,828-821[UP5];21-21,808-808[UP3]	.((((((((((((........&........)))))))))))).	UGACGGAUCCUGUCAAGCGAU&AAAUAAAUAUAGGAUCCGUUG	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN13336_c0_g2_819_TPlot.pdf
TRINITY_DN13350_c0_g1:95	si_a505	TRINITY_DN13350_c0_g1	80	103	95	-33.30	-22.30	0.66966966966967	7.5	1-8,103-96;10-15,95-90;16-21,85-80	9-9,x-x[BULq];x-x,89-86[BULt]	((((((....((((((-((((((((&)))))))).))))))----))))))	UACAUUGGCACCAAGG-AGGCGAAG&UUUCGUCUUCCUUGG----AAUGUA	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN13350_c0_g1_95_TPlot.pdf
TRINITY_DN1335_c0_g1:3781	si_s72	TRINITY_DN1335_c0_g1	3770	3791	3781	-24.10	-15.70	0.651452282157676	8.5	1-9,3791-3783;10-18,3781-3773	x-x,3782-3782[BULt];19-21,3772-3770[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	UCUGAAAGAGAAGGAAGUAGAG&UUCUAUUUU-UUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1335_c0_g1_3781_TPlot.pdf
TRINITY_DN1335_c0_g1:3783	si_s71	TRINITY_DN1335_c0_g1	3771	3792	3783	-25.70	-18.80	0.731517509727627	7.5	1-10,3792-3783;11-19,3781-3773	x-x,3782-3782[BULt];20-21,3772-3771[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	CUGAAAGAGAAGGAAGUAGAGG&CUUCUAUUUU-UUUUCUUUCCU	2	0.999995318550385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1335_c0_g1_3783_TPlot.pdf
TRINITY_DN1335_c0_g1:3784	si_s70	TRINITY_DN1335_c0_g1	3772	3793	3784	-25.80	-18.80	0.728682170542636	7.5	2-11,3792-3783;12-20,3781-3773	1-1,3793-3793[UP5];x-x,3782-3782[BULt];21-21,3772-3772[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	UGAAAGAGAAGGAAGUAGAGGA&ACUUCUAUUUU-UUUUCUUUCC	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1335_c0_g1_3784_TPlot.pdf
TRINITY_DN1335_c0_g1:3785	si_s69	TRINITY_DN1335_c0_g1	3773	3794	3785	-23.40	-18.80	0.803418803418803	8.5	3-12,3792-3783;13-21,3781-3773	1-2,3794-3793[UP5];x-x,3782-3782[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GAAAGAGAAGGAAGUAGAGGAG&AACUUCUAUUUU-UUUUCUUUC	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1335_c0_g1_3785_TPlot.pdf
TRINITY_DN1335_c0_g1:3786	si_s68	TRINITY_DN1335_c0_g1	3774	3795	3786	-23.10	-15.80	0.683982683982684	9	4-13,3792-3783;14-21,3781-3774	1-3,3795-3793[UP5];x-x,3782-3782[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AAAGAGAAGGAAGUAGAGGAGA&CAACUUCUAUUUU-UUUUCUUU	0	0.588121401510188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1335_c0_g1_3786_TPlot.pdf
TRINITY_DN1335_c0_g1:3788	si_s79	TRINITY_DN1335_c0_g1	3777	3797	3788	-26.20	-19.40	0.740458015267176	7	2-10,3796-3788;12-21,3786-3777	1-1,3797-3797[UP5];11-11,3787-3787[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	GAGAAGGAAGUAGAGGAGAAG&UUUUUUCUUUCCUUUCUUCUU	2	0.999999988091986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1335_c0_g1_3788_TPlot.pdf
TRINITY_DN1335_c0_g1:3791	si_a787	TRINITY_DN1335_c0_g1	3780	3800	3791	-26.30	-18.40	0.699619771863118	8	1-5,3800-3796;7-19,3794-3782	6-6,3795-3795[SIL];20-21,3781-3780[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AAGGAAGUAGAGGAGAAGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1335_c0_g1_3791_TPlot.pdf
TRINITY_DN1335_c0_g1:3792	si_a786	TRINITY_DN1335_c0_g1	3781	3801	3792	-26.60	-18.50	0.695488721804511	8	2-6,3800-3796;8-20,3794-3782	1-1,3801-3801[UP5];7-7,3795-3795[SIL];21-21,3781-3781[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGGAAGUAGAGGAGAAGAAGG&UCUUCUAUUUUUCUAUUUUCC	2	0.999960673473756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1335_c0_g1_3792_TPlot.pdf
TRINITY_DN1335_c0_g1:3796	si_s77	TRINITY_DN1335_c0_g1	3783	3805	3796	-25.50	-19.60	0.768627450980392	7.5	1-10,3805-3796;11-17,3794-3788;18-21,3786-3783	x-x,3795-3795[BULt];x-x,3787-3787[BULt]	((((.(((((((.((((((((((&))))))))))-)))))))-))))	GAAGUAGAGGAGAAGAAGGAGAA&UUUUUUUUCU-UUCCUUU-CUUC	2	0.999994142994373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1335_c0_g1_3796_TPlot.pdf
TRINITY_DN1335_c0_g1:3797	si_s85	TRINITY_DN1335_c0_g1	3786	3807	3797	-33.80	-23.50	0.695266272189349	5.5	1-5,3807-3803;6-18,3801-3789;20-21,3787-3786	x-x,3802-3802[BULt];19-19,3788-3788[SIL]	((.(((((((((((((.(((((&)))))-))))))))))))).))	GUAGAGGAGAAGAAGGAGAAAG&CUUUC-CUUUCUUCUUCUUCGC	2	0.999995140447987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1335_c0_g1_3797_TPlot.pdf
TRINITY_DN1335_c0_g1:3798	si_s90	TRINITY_DN1335_c0_g1	3787	3807	3798	-35.30	-25.00	0.708215297450425	4.5	1-14,3807-3794;16-19,3792-3789	15-15,3793-3793[SIL];20-21,3788-3787[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UAGAGGAGAAGAAGGAGAAAG&CUUUCUUCUUCUUCGCUUCGG	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1335_c0_g1_3798_TPlot.pdf
TRINITY_DN1335_c0_g1:3799	si_s89	TRINITY_DN1335_c0_g1	3788	3808	3799	-35.30	-25.20	0.713881019830028	4.5	2-15,3807-3794;17-20,3792-3789	1-1,3808-3808[UP5];16-16,3793-3793[SIL];21-21,3788-3788[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AGAGGAGAAGAAGGAGAAAGC&CCUUUCUUCUUCUUCGCUUCG	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1335_c0_g1_3799_TPlot.pdf
TRINITY_DN1335_c0_g1:3801	si_s87	TRINITY_DN1335_c0_g1	3790	3811	3801	-32.90	-23.50	0.714285714285714	5	1-3,3811-3809;4-17,3807-3794;19-21,3792-3790	x-x,3808-3808[BULt];18-18,3793-3793[SIL]	(((.((((((((((((((.(((&)))-)))))))))))))).)))	AGGAGAAGAAGGAGAAAGCGAG&UUC-CUUUCUUCUUCUUCGCUU	4	0.999999979669509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1335_c0_g1_3801_TPlot.pdf
TRINITY_DN1335_c0_g1:3802	si_s86	TRINITY_DN1335_c0_g1	3791	3812	3802	-32.90	-23.20	0.70516717325228	6	1-4,3812-3809;5-18,3807-3794;20-21,3792-3791	x-x,3808-3808[BULt];19-19,3793-3793[SIL]	((.((((((((((((((.((((&))))-)))))))))))))).))	GGAGAAGAAGGAGAAAGCGAGG&UUUC-CUUUCUUCUUCUUCGCU	3	0.999999999623995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1335_c0_g1_3802_TPlot.pdf
TRINITY_DN1335_c0_g1:3803	si_s80	TRINITY_DN1335_c0_g1	3791	3812	3803	-28.20	-20.30	0.719858156028369	8	1-4,3812-3809;6-10,3807-3803;11-21,3801-3791	5-5,3808-3808[SIL];x-x,3802-3802[BULt]	(((((((((((.(((((.((((&)))).)))))-)))))))))))	GGAGAAGAAGGAGAAAGCGAGG&UUUUUCUUUC-CUUUCUUCUUC	2	0.999999999384285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1335_c0_g1_3803_TPlot.pdf
TRINITY_DN1335_c0_g1:3805	si_s83	TRINITY_DN1335_c0_g1	3794	3814	3805	-30.90	-22.40	0.724919093851133	7.5	3-6,3812-3809;8-21,3807-3794	1-2,3814-3813[UP5];7-7,3808-3808[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAAGAAGGAGAAAGCGAGGUU&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999822214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1335_c0_g1_3805_TPlot.pdf
TRINITY_DN1335_c0_g1:3955	si_s77	TRINITY_DN1335_c0_g1	3943	3964	3955	-25.50	-16.90	0.662745098039216	8	3-10,3962-3955;11-19,3953-3945	1-2,3964-3963[UP5];x-x,3954-3954[BULt];20-21,3944-3943[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	UUGGAAGGGAACAGAAAAAACG&UUUUUUUUCU-UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1335_c0_g1_3955_TPlot.pdf
TRINITY_DN1335_c0_g1:3957	si_s75	TRINITY_DN1335_c0_g1	3945	3966	3957	-24.00	-16.90	0.704166666666667	10	5-12,3962-3955;13-21,3953-3945	1-4,3966-3963[UP5];x-x,3954-3954[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	GGAAGGGAACAGAAAAAACGAA&UAUUUUUUUUCU-UUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1335_c0_g1_3957_TPlot.pdf
TRINITY_DN1335_c0_g1:3989	si_a758	TRINITY_DN1335_c0_g1	3979	3998	3989	-34.00	-24.80	0.729411764705882	6.5	1-8,3998-3991;10-17,3989-3982;19-21,3981-3979	9-9,3990-3990[SIL];18-18,x-x[BULq]	(((-((((((((.((((((((&)))))))).)))))))).)))	CAG-CAGGAGCUGAAAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1335_c0_g1_3989_TPlot.pdf
TRINITY_DN13362_c0_g1:75	si_s59	TRINITY_DN13362_c0_g1	64	85	75	-29.20	-19.20	0.657534246575342	9	1-2,85-84;3-16,82-69	x-x,83-83[BULt];17-21,68-64[UP3]	.....((((((((((((((.((&))-)))))))))))))).....	CAGGUGAAGUUGUUAGCUUCGA&UC-AAGUUAGCAACUUCUAUUU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN13362_c0_g1_75_TPlot.pdf
TRINITY_DN13365_c0_g2:2045	si_a650	TRINITY_DN13365_c0_g2	2034	2054	2045	-33.30	-23.50	0.705705705705706	4.5	2-3,2053-2052;5-20,2050-2035	1-1,2054-2054[UP5];4-4,2051-2051[SIL];21-21,2034-2034[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	CGCAUUUUCCGAUAUAUCACC&AGUAAUAUAUCGGGAAAUGCC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a650_TRINITY_DN13365_c0_g2_2045_TPlot.pdf
TRINITY_DN13365_c1_g1:74	si_a474	TRINITY_DN13365_c1_g1	63	84	74	-23.60	-15.90	0.673728813559322	10.5	1-7,84-78;9-20,75-64	8-8,77-76[AILt];21-21,63-63[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	ACUGUGUGACAGUUUGUUAUGU&AUGUAAU-UAUUGUUAUAUAGA	0	0.102878931741744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN13365_c1_g1_74_TPlot.pdf
TRINITY_DN13365_c1_g1:75	si_a473	TRINITY_DN13365_c1_g1	64	85	75	-23.00	-17.20	0.747826086956522	9.5	1-8,85-78;10-21,75-64	9-9,77-76[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	CUGUGUGACAGUUUGUUAUGUA&UAUGUAAU-UAUUGUUAUAUAG	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN13365_c1_g1_75_TPlot.pdf
TRINITY_DN13365_c1_g1:76	si_s428	TRINITY_DN13365_c1_g1	64	85	76	-21.50	-14.02	0.652093023255814	10	1-10,85-76;14-20,71-65	11-13,75-72[AILt];21-21,64-64[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	CUGUGUGACAGUUUGUUAUGUA&UAUAUAACAA-UAAUUACAUAU	2	0.984345763725476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN13365_c1_g1_76_TPlot.pdf
TRINITY_DN13368_c0_g1:2922	si_a492	TRINITY_DN13368_c0_g1	2907	2931	2922	-30.20	-19.70	0.652317880794702	17	4-12,2928-2920;13-20,2915-2908	1-3,2931-2929[UP5];x-x,2919-2916[BULt];21-21,2907-2907[UP3]	.((((((((....(((((((((...&...)))))))))----)))))))).	UGACGAAAAACUAGCGGCAUGUGGU&AGAAUAUGUCGU----UUUUCGUCU	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN13368_c0_g1_2922_TPlot.pdf
TRINITY_DN13373_c0_g1:1270	si_s819	TRINITY_DN13373_c0_g1	1259	1279	1270	-23.00	-16.50	0.717391304347826	7	1-13,1279-1267;15-18,1265-1262	14-14,1266-1266[SIL];19-21,1261-1259[UP3]	...((((.(((((((((((((&))))))))))))).))))...	CCGUUUCUUUGUUAGGAAGAG&CUUUUCUUAAUAAUGAAAAAC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN13373_c0_g1_1270_TPlot.pdf
TRINITY_DN13373_c0_g1:1271	si_s818	TRINITY_DN13373_c0_g1	1260	1280	1271	-23.70	-19.50	0.822784810126582	6	1-14,1280-1267;16-19,1265-1262	15-15,1266-1266[SIL];20-21,1261-1260[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	CGUUUCUUUGUUAGGAAGAGG&CCUUUUCUUAAUAAUGAAAAA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN13373_c0_g1_1271_TPlot.pdf
TRINITY_DN13373_c0_g1:1272	si_s817	TRINITY_DN13373_c0_g1	1261	1281	1272	-24.50	-19.50	0.795918367346939	5.5	2-15,1280-1267;17-20,1265-1262	1-1,1281-1281[UP5];16-16,1266-1266[SIL];21-21,1261-1261[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	GUUUCUUUGUUAGGAAGAGGA&ACCUUUUCUUAAUAAUGAAAA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN13373_c0_g1_1272_TPlot.pdf
TRINITY_DN13373_c0_g1:1273	si_s816	TRINITY_DN13373_c0_g1	1262	1282	1273	-24.90	-19.30	0.775100401606426	6.5	3-16,1280-1267;18-21,1265-1262	1-2,1282-1281[UP5];17-17,1266-1266[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UUUCUUUGUUAGGAAGAGGAG&UACCUUUUCUUAAUAAUGAAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN13373_c0_g1_1273_TPlot.pdf
TRINITY_DN13373_c0_g1:1274	si_s815	TRINITY_DN13373_c0_g1	1263	1283	1274	-25.00	-18.50	0.74	8.5	4-17,1280-1267;19-21,1265-1263	1-3,1283-1281[UP5];18-18,1266-1266[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UUCUUUGUUAGGAAGAGGAGG&UUACCUUUUCUUAAUAAUGAA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN13373_c0_g1_1274_TPlot.pdf
TRINITY_DN13373_c0_g1:1415	si_s138	TRINITY_DN13373_c0_g1	1406	1424	1415	-29.70	-20.00	0.673400673400673	7	1-1,1424-1424;4-11,1421-1414;14-21,1413-1406	2-3,1423-1422[SIL];12-13,x-x[BULq]	((((((((--((((((((..(&)..))))))))..))))))))	CUUUGGGU--UUGAUUGAAGC&GAAUCAAUCAAAAACCCAAAG	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s138_TRINITY_DN13373_c0_g1_1415_TPlot.pdf
TRINITY_DN13373_c1_g2:116	si_s87	TRINITY_DN13373_c1_g2	99	125	116	-32.90	-21.70	0.659574468085106	13.5	1-11,125-115;12-14,109-107;16-21,104-99	x-x,114-110[BULt];15-15,106-105[AILt]	((((((..(((.....(((((((((((&)))))))))))-----)))-.))))))	AGGCGAUUGAACUGUUGAAGAAGGGAA&UUCCUUUCUUC-----UUC-UUCGCUU	0	0.736655490804771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN13373_c1_g2_116_TPlot.pdf
TRINITY_DN13376_c0_g1:743	si_a785	TRINITY_DN13376_c0_g1	732	751	743	-25.90	-17.30	0.667953667953668	9	2-8,750-744;11-21,742-732	1-1,751-751[UP5];9-10,743-743[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	GAGAAUGGAAAU-UGGGAGGU&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN13376_c0_g1_743_TPlot.pdf
TRINITY_DN13376_c1_g2:413	si_s514	TRINITY_DN13376_c1_g2	402	422	413	-24.80	-18.10	0.729838709677419	9	3-17,420-406	1-2,422-421[UP5];18-21,405-402[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCGGGAAUUGAGAGUAUAGUA&UUCUAUAUUCUUAAUUCGAAA	1	0.00931934618231856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN13376_c1_g2_413_TPlot.pdf
TRINITY_DN13377_c1_g2:1384	si_a415	TRINITY_DN13377_c1_g2	1373	1393	1384	-18.10	-11.80	0.651933701657459	10.5	5-19,1389-1375	1-4,1393-1390[UP5];20-21,1374-1373[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAAUAUUUGUUUGAAUAAAUU&UUUAUAUUUAAAUAAAUAUAG	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN13377_c1_g2_1384_TPlot.pdf
TRINITY_DN13378_c1_g1:860	si_s11	TRINITY_DN13378_c1_g1	849	869	860	-23.60	-16.10	0.682203389830509	10	2-6,868-864;9-19,861-851	1-1,869-869[UP5];7-8,863-862[SIL];20-21,850-849[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	CGCAAUAUAGUGACUGUAGGG&ACUUAUUAUUACUAUAUUGAU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN13378_c1_g1_860_TPlot.pdf
TRINITY_DN13378_c1_g1:862	si_s9	TRINITY_DN13378_c1_g1	851	871	862	-22.90	-15.90	0.694323144104804	12	4-8,868-864;11-21,861-851	1-3,871-869[UP5];9-10,863-862[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	CAAUAUAGUGACUGUAGGGUU&UUACUUAUUAUUACUAUAUUG	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN13378_c1_g1_862_TPlot.pdf
TRINITY_DN13378_c2_g2:54	si_a762	TRINITY_DN13378_c2_g2	43	63	54	-29.70	-21.10	0.710437710437711	6	1-15,63-49;17-20,47-44	16-16,48-48[SIL];21-21,43-43[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	AGAUCCGUCAAAAACUCGAGG&CUUUGGGUUUUUGAUUGAUUC	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN13378_c2_g2_54_TPlot.pdf
TRINITY_DN1337_c0_g1:601	si_a400	TRINITY_DN1337_c0_g1	590	610	601	-22.80	-15.40	0.675438596491228	6	1-4,610-607;6-10,605-601;12-20,599-591	5-5,606-606[SIL];11-11,600-600[SIL];21-21,590-590[UP3]	.(((((((((.(((((.((((&)))).))))).))))))))).	AAUAAACAAAUCAAUUGUGUA&UAUAGAAUUGUUUUGUUUAUA	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1337_c0_g1_601_TPlot.pdf
TRINITY_DN1337_c0_g2:2233	si_s485	TRINITY_DN1337_c0_g2	2222	2242	2233	-18.10	-11.90	0.657458563535912	10	1-14,2242-2229	15-21,2228-2222[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCAUAUUGAAUAGAUAUGG&CUAUAUUUAUUUAAAUAUAAA	4	0.99999805292576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1337_c0_g2_2233_TPlot.pdf
TRINITY_DN13380_c0_g1:1993	si_s76	TRINITY_DN13380_c0_g1	1981	2002	1993	-23.60	-15.50	0.656779661016949	10	3-6,2000-1997;8-17,1995-1986;18-21,1984-1981	1-2,2002-2001[UP5];7-7,1996-1996[SIL];x-x,1985-1985[BULt]	((((.((((((((((.((((..&..)))).))))))))))-))))	AAGACAAGGAGAGGAUGAAGCG&AUUUUUUUUCUUUCCUU-UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13380_c0_g1_1993_TPlot.pdf
TRINITY_DN13380_c0_g1:2443	si_a493	TRINITY_DN13380_c0_g1	2431	2452	2443	-29.50	-19.68	0.667118644067797	9.5	1-2,2452-2451;6-10,2447-2443;11-21,2441-2431	3-5,2450-2448[SIL];x-x,2442-2442[BULt]	(((((((((((.(((((...((&))...)))))-)))))))))))	AGGACGAAAAAUCGACGCUGUC&GAAUAUGUCG-UUUUUCGUCUU	4	0.999997606512646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN13380_c0_g1_2443_TPlot.pdf
TRINITY_DN13380_c0_g1:372	si_s792	TRINITY_DN13380_c0_g1	361	381	372	-28.50	-18.80	0.659649122807018	8	4-15,378-367;18-21,364-361	1-3,381-379[UP5];16-17,366-365[SIL]	((((..((((((((((((...&...))))))))))))..))))	AAGACCAAAUGCGAGCUUUGG&AACAAGCUCGUAUUUUAUCUU	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN13380_c0_g1_372_TPlot.pdf
TRINITY_DN13380_c0_g1:433	si_s68	TRINITY_DN13380_c0_g1	422	442	433	-23.10	-16.50	0.714285714285714	7	4-14,439-429;16-21,427-422	1-3,442-440[UP5];15-15,428-428[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AAAGAAUAAAGAUAGAAGAAG&CAACUUCUAUUUUUUUUCUUU	4	0.999999990721386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13380_c0_g1_433_TPlot.pdf
TRINITY_DN1338_c0_g1:223	si_s582	TRINITY_DN1338_c0_g1	212	232	223	-22.50	-14.70	0.653333333333333	17.5	9-19,224-214	1-8,232-225[UP5];20-21,213-212[UP3]	..(((((((((((........&........)))))))))))..	ACUUGUCCAUGAUAACCACAC&AUAAAAAAAUCAUGGAUAAAU	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN1338_c0_g1_223_TPlot.pdf
TRINITY_DN1338_c1_g1:4627	si_a896	TRINITY_DN1338_c1_g1	4616	4636	4627	-21.60	-14.50	0.671296296296296	8	3-17,4634-4620	1-2,4636-4635[UP5];18-21,4619-4616[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUAAGUUAUUUAUUAUUACAU&UAGUAAUAAUAAGUAAUAUAA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN1338_c1_g1_4627_TPlot.pdf
TRINITY_DN13398_c0_g1:163	si_s608	TRINITY_DN13398_c0_g1	152	172	163	-26.70	-17.90	0.670411985018727	9	2-2,171-171;5-12,168-161;14-21,159-152	1-1,172-172[UP5];3-4,170-169[SIL];13-13,160-160[SIL]	((((((((.((((((((..(.&.)..)))))))).))))))))	CUUGGAUUCGAGAAGGAGCCU&CGAAUCUUUUUUAAAUCCAAG	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN13398_c0_g1_163_TPlot.pdf
TRINITY_DN1339_c0_g1:1025	si_a785	TRINITY_DN1339_c0_g1	1014	1034	1025	-25.90	-25.20	0.972972972972973	4.5	1-21,1034-1014	NA	(((((((((((((((((((((&)))))))))))))))))))))	GAAAAUGGAAAAAUGGGGGGG&CUCUUCUAUUUUUCUAUUUUC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1339_c0_g1_1025_TPlot.pdf
TRINITY_DN1339_c0_g1:1026	si_a784	TRINITY_DN1339_c0_g1	1015	1035	1026	-24.70	-22.00	0.890688259109312	5.5	2-21,1034-1015	1-1,1035-1035[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AAAAUGGAAAAAUGGGGGGGA&ACUCUUCUAUUUUUCUAUUUU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1339_c0_g1_1026_TPlot.pdf
TRINITY_DN1339_c0_g1:1334	si_a512	TRINITY_DN1339_c0_g1	1323	1343	1334	-37.80	-25.00	0.661375661375661	9	1-8,1343-1336;10-11,1334-1333;13-20,1331-1324	9-9,1335-1335[SIL];12-12,1332-1332[SIL];21-21,1323-1323[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	GCUGCCUUGGGUACUAGGGAA&UUCCUUGGAAUGUAAGGCGGA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN1339_c0_g1_1334_TPlot.pdf
TRINITY_DN1339_c0_g1:1337	si_a509	TRINITY_DN1339_c0_g1	1326	1346	1337	-37.30	-25.50	0.683646112600536	7	2-11,1345-1336;13-14,1334-1333;16-21,1331-1326	1-1,1346-1346[UP5];12-12,1335-1335[SIL];15-15,1332-1332[SIL]	((((((.((.((((((((((.&.)))))))))).)).))))))	GCCUUGGGUACUAGGGAAGAG&GUCUUCCUUGGAAUGUAAGGC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN1339_c0_g1_1337_TPlot.pdf
TRINITY_DN1339_c0_g1:1338	si_a508	TRINITY_DN1339_c0_g1	1327	1347	1338	-36.30	-24.60	0.677685950413223	7	1-1,1347-1347;3-12,1345-1336;14-15,1334-1333;17-21,1331-1327	2-2,1346-1346[SIL];13-13,1335-1335[SIL];16-16,1332-1332[SIL]	(((((.((.((((((((((.(&).)))))))))).)).)))))	CCUUGGGUACUAGGGAAGAGG&CGUCUUCCUUGGAAUGUAAGG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN1339_c0_g1_1338_TPlot.pdf
TRINITY_DN1339_c0_g1:1349	si_s71	TRINITY_DN1339_c0_g1	1338	1357	1349	-25.70	-17.20	0.669260700389105	7	1-5,1357-1353;7-9,1352-1350;11-21,1348-1338	6-6,x-x[BULq];10-10,1349-1349[SIL]	(((((((((((.(((-(((((&))))).))).)))))))))))	AGGGAAGAGGACAAA-GGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1339_c0_g1_1349_TPlot.pdf
TRINITY_DN1339_c0_g1:1559	si_a794	TRINITY_DN1339_c0_g1	1548	1568	1559	-28.60	-19.30	0.674825174825175	9	2-14,1567-1555;16-18,1553-1551	1-1,1568-1568[UP5];15-15,1554-1554[SIL];19-21,1550-1548[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	GUAGGAAUGGGAAGUGGAAGU&UUUUCUAUUUUCCAAUCCGAA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1339_c0_g1_1559_TPlot.pdf
TRINITY_DN1339_c0_g1:1560	si_a793	TRINITY_DN1339_c0_g1	1549	1569	1560	-28.50	-19.30	0.67719298245614	10	3-15,1567-1555;17-19,1553-1551	1-2,1569-1568[UP5];16-16,1554-1554[SIL];20-21,1550-1549[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UAGGAAUGGGAAGUGGAAGUA&UUUUUCUAUUUUCCAAUCCGA	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN1339_c0_g1_1560_TPlot.pdf
TRINITY_DN1339_c0_g1:2823	si_a464	TRINITY_DN1339_c0_g1	2812	2832	2823	-19.60	-12.80	0.653061224489796	12	7-20,2826-2813	1-6,2832-2827[UP5];21-21,2812-2812[UP3]	.((((((((((((((......&......)))))))))))))).	UAUAAUUACAUAUUAAAACAA&UAUAUAUAAUAUGUAAUUAUU	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN1339_c0_g1_2823_TPlot.pdf
TRINITY_DN1339_c0_g1:706	si_a320	TRINITY_DN1339_c0_g1	695	715	706	-24.40	-17.20	0.704918032786885	10	6-21,710-695	1-5,715-711[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAUAAAAGAAUCAUGUCUUU&UUAUCCAUGAUUUUUUUAUUC	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1339_c0_g1_706_TPlot.pdf
TRINITY_DN1339_c1_g1:3191	si_a405	TRINITY_DN1339_c1_g1	3180	3200	3191	-19.80	-13.40	0.676767676767677	6.5	1-16,3200-3185;18-20,3183-3181	17-17,3184-3184[SIL];21-21,3180-3180[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	CUAAUUAUGGAUAAGAUAAUU&AAUUGUUUUGUUUAUAUUUAA	2	0.999999999999105	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1339_c1_g1_3191_TPlot.pdf
TRINITY_DN1339_c1_g1:3847	si_a668	TRINITY_DN1339_c1_g1	3833	3856	3847	-33.20	-22.80	0.686746987951807	9.5	1-10,3856-3847;11-13,3844-3842;14-19,3840-3835	x-x,3846-3845[BULt];x-x,3841-3841[BULt];20-21,3834-3833[UP3]	..((((((.(((..((((((((((&))))))))))--)))-))))))..	CAGAAUGACGGAAGAUCGAUGGGC&GCCUAUUGAU--UCC-UUAUUCAC	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN1339_c1_g1_3847_TPlot.pdf
TRINITY_DN133_c0_g1:4368	si_a554	TRINITY_DN133_c0_g1	4357	4380	4368	-34.40	-24.32	0.706976744186047	16	1-3,4380-4378;6-7,4375-4374;10-21,4368-4357	4-5,4377-4376[SIL];8-9,4373-4369[AILt]	((((((((((((.....((..(((&)))..))---..))))))))))))	CACGGGGAGGUGUCCCUGAUUUAG&CUAUUUC---UUUAUCUCCCCGUG	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN133_c0_g1_4368_TPlot.pdf
TRINITY_DN133_c1_g1:1375	si_s510	TRINITY_DN133_c1_g1	1364	1384	1375	-24.80	-16.90	0.681451612903226	7	2-3,1383-1382;5-15,1380-1370;17-21,1368-1364	1-1,1384-1384[UP5];4-4,1381-1381[SIL];16-16,1369-1369[SIL]	(((((.(((((((((((.((.&.)).))))))))))).)))))	GGAUUUGGAGUAUAGAGGUGG&ACAAUUCUAUAUUCUUAAUUC	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN133_c1_g1_1375_TPlot.pdf
TRINITY_DN133_c3_g1:1647	si_s743	TRINITY_DN133_c3_g1	1636	1657	1647	-29.00	-20.20	0.696551724137931	10	1-9,1657-1649;11-15,1646-1642	10-10,1648-1647[AILt];16-21,1641-1636[UP3]	......(((((..(((((((((&)))))))))-.)))))......	AAGCGCGGUCAUUUCUAUUCAC&GUGAAUAGA-UUGACCUUAAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN133_c3_g1_1647_TPlot.pdf
TRINITY_DN133_c3_g1:3794	si_s485	TRINITY_DN133_c3_g1	3783	3803	3794	-18.10	-13.10	0.723756906077348	7	2-6,3802-3798;8-21,3796-3783	1-1,3803-3803[UP5];7-7,3797-3797[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UUUGUGUUUAAAUGUGUAUGU&CUAUAUUUAUUUAAAUAUAAA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN133_c3_g1_3794_TPlot.pdf
TRINITY_DN133_c3_g1:4659	si_s436	TRINITY_DN133_c3_g1	4648	4668	4659	-19.60	-13.70	0.698979591836735	8	1-5,4668-4664;8-18,4661-4651	6-7,4663-4662[SIL];19-21,4650-4648[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	GUGAUAUAAUAUGUUUUUGUU&AAUAAUUACAUAUUAUAUAUA	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN133_c3_g1_4659_TPlot.pdf
TRINITY_DN133_c3_g1:4660	si_s435	TRINITY_DN133_c3_g1	4649	4669	4660	-20.90	-16.00	0.76555023923445	7	1-6,4669-4664;9-19,4661-4651	7-8,4663-4662[SIL];20-21,4650-4649[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	UGAUAUAAUAUGUUUUUGUUG&CAAUAAUUACAUAUUAUAUAU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN133_c3_g1_4660_TPlot.pdf
TRINITY_DN133_c3_g1:4662	si_s433	TRINITY_DN133_c3_g1	4651	4671	4662	-21.10	-16.20	0.767772511848341	8	3-8,4669-4664;11-21,4661-4651	1-2,4671-4670[UP5];9-10,4663-4662[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	AUAUAAUAUGUUUUUGUUGCC&AACAAUAAUUACAUAUUAUAU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN133_c3_g1_4662_TPlot.pdf
TRINITY_DN133_c3_g2:1234	si_s730	TRINITY_DN133_c3_g2	1220	1244	1234	-33.40	-22.90	0.68562874251497	8	1-8,1244-1237;9-15,1235-1229;16-21,1225-1220	x-x,1236-1236[BULt];x-x,1228-1226[BULt]	((((((...(((((((.((((((((&))))))))-)))))))---))))))	UUAUUCAAUGCCCGUCGUAGGUAGU&AUUAUCUA-GACGGGU---GAAUAG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s730_TRINITY_DN133_c3_g2_1234_TPlot.pdf
TRINITY_DN133_c3_g2:1237	si_s728	TRINITY_DN133_c3_g2	1222	1246	1237	-31.90	-22.20	0.695924764890282	8.5	2-10,1245-1237;11-17,1235-1229;18-21,1225-1222	1-1,1246-1246[UP5];x-x,1236-1236[BULt];x-x,1228-1226[BULt]	((((...(((((((.(((((((((.&.)))))))))-)))))))---))))	AUUCAAUGCCCGUCGUAGGUAGUAG&AUAUUAUCUA-GACGGGU---GAAU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN133_c3_g2_1237_TPlot.pdf
TRINITY_DN133_c3_g2:1240	si_s725	TRINITY_DN133_c3_g2	1228	1249	1240	-33.40	-21.80	0.652694610778443	11.5	5-13,1245-1237;14-20,1235-1229	1-4,1249-1246[UP5];x-x,1236-1236[BULt];21-21,1228-1228[UP3]	.(((((((.(((((((((....&....)))))))))-))))))).	UGCCCGUCGUAGGUAGUAGCCA&AAGAUAUUAUCUA-GACGGGUG	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s725_TRINITY_DN133_c3_g2_1240_TPlot.pdf
TRINITY_DN13401_c0_g2:767	si_s298	TRINITY_DN13401_c0_g2	756	776	767	-30.80	-21.30	0.691558441558442	8	1-14,776-763	15-21,762-756[UP3]	.......((((((((((((((&)))))))))))))).......	AACGGUCCGCAAUUUCAAUCG&CGAUUGGAAUUGCGAAAAUUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN13401_c0_g2_767_TPlot.pdf
TRINITY_DN13402_c0_g1:403	si_a76	TRINITY_DN13402_c0_g1	393	412	403	-21.20	-15.10	0.712264150943396	7	4-15,409-398;17-21,397-393	1-3,412-410[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	CUUGA-GAUGAAAAACAAAAU&AAAUUGUUUUUCAUUAUUAAG	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN13402_c0_g1_403_TPlot.pdf
TRINITY_DN13407_c0_g1:463	si_s882	TRINITY_DN13407_c0_g1	452	472	463	-26.30	-19.00	0.722433460076046	4.5	1-10,472-463;12-19,461-454	11-11,462-462[SIL];20-21,453-452[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GCGUCUAUUUCUUUUUAGUUC&GAACUAAAAAUAAAUAGGCUU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN13407_c0_g1_463_TPlot.pdf
TRINITY_DN13413_c0_g1:1148	si_a506	TRINITY_DN13413_c0_g1	1136	1158	1148	-33.40	-23.80	0.712574850299401	9	1-3,1158-1156;4-14,1154-1144;15-20,1142-1137	x-x,1155-1155[BULt];x-x,1143-1143[BULt];21-21,1136-1136[UP3]	.((((((.(((((((((((.(((&)))-)))))))))))-)))))).	GUGCGUUGCCGGGGGAGACAGGA&UUC-GUCUUCCUUGG-AAUGUAA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN13413_c0_g1_1148_TPlot.pdf
TRINITY_DN13413_c0_g1:1270	si_s628	TRINITY_DN13413_c0_g1	1255	1279	1270	-35.40	-23.80	0.672316384180791	12	1-13,1279-1267;14-17,1262-1259	x-x,1266-1263[BULt];18-21,1258-1255[UP3]	....((((....(((((((((((((&)))))))))))))----))))....	AAUGGCCUCGCAAUGGAGAGGUCGC&GCGAUCUUUUCGU----AGGCGUUU	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN13413_c0_g1_1270_TPlot.pdf
TRINITY_DN13413_c0_g1:1271	si_s627	TRINITY_DN13413_c0_g1	1256	1280	1271	-36.10	-23.80	0.659279778393352	11.5	2-14,1279-1267;15-18,1262-1259	1-1,1280-1280[UP5];x-x,1266-1263[BULt];19-21,1258-1256[UP3]	...((((....(((((((((((((.&.)))))))))))))----))))...	AUGGCCUCGCAAUGGAGAGGUCGCG&AGCGAUCUUUUCGU----AGGCGUU	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN13413_c0_g1_1271_TPlot.pdf
TRINITY_DN13413_c0_g1:1272	si_s626	TRINITY_DN13413_c0_g1	1257	1281	1272	-36.10	-23.80	0.659279778393352	12.5	3-15,1279-1267;16-19,1262-1259	1-2,1281-1280[UP5];x-x,1266-1263[BULt];20-21,1258-1257[UP3]	..((((....(((((((((((((..&..)))))))))))))----))))..	UGGCCUCGCAAUGGAGAGGUCGCGG&AAGCGAUCUUUUCGU----AGGCGU	2	0.99060244577417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN13413_c0_g1_1272_TPlot.pdf
TRINITY_DN13413_c0_g1:1346	si_a758	TRINITY_DN13413_c0_g1	1331	1355	1346	-34.00	-22.40	0.658823529411765	10	1-13,1355-1343;14-17,1338-1335;20-21,1332-1331	x-x,1342-1339[BULt];18-19,1334-1333[SIL]	((..((((....(((((((((((((&)))))))))))))----))))..))	CAGGCAGACUCCGACUCGGAGGAGG&CCUCCUUUGGGUU----UUUGAUUG	3	0.999999891132899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN13413_c0_g1_1346_TPlot.pdf
TRINITY_DN13436_c0_g1:1831	si_a351	TRINITY_DN13436_c0_g1	1820	1839	1831	-20.50	-14.80	0.721951219512195	6	3-6,1837-1834;8-20,1833-1821	1-2,1839-1838[UP5];7-7,x-x[BULq];21-21,1820-1820[UP3]	.(((((((((((((-((((..&..)))).))))))))))))).	UUCAAAAUAGAAUU-AUAUGA&AAAUAUUAAUUCUAUUUUGAU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN13436_c0_g1_1831_TPlot.pdf
TRINITY_DN13438_c0_g1:5074	si_a459	TRINITY_DN13438_c0_g1	5063	5084	5074	-23.20	-15.30	0.65948275862069	7	1-9,5084-5076;10-17,5074-5067;19-20,5065-5064	x-x,5075-5075[BULt];18-18,5066-5066[SIL];21-21,5063-5063[UP3]	.((.((((((((.(((((((((&)))))))))-)))))))).)).	CUAGGUAUUGUGCUAUAACAAU&GUUGUUAUA-UAUAAUAUGUAA	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN13438_c0_g1_5074_TPlot.pdf
TRINITY_DN13440_c0_g1:16	si_a412	TRINITY_DN13440_c0_g1	5	28	16	-18.30	-13.70	0.748633879781421	9.5	1-8,28-21;9-21,17-5	x-x,20-18[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	UGUUUAUUUAGGUUUUAUGAACAA&UUGUUUAU---AUUUAAAUAAAUA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN13440_c0_g1_16_TPlot.pdf
TRINITY_DN13441_c0_g1:1155	si_s808	TRINITY_DN13441_c0_g1	1144	1164	1155	-28.60	-21.50	0.751748251748252	8.5	4-18,1161-1147	1-3,1164-1162[UP5];19-21,1146-1144[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUCAGAAGAGGUAACGAAAUU&AUCUUCGUUACCUUUUCUUAA	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN13441_c0_g1_1155_TPlot.pdf
TRINITY_DN1344_c0_g1:544	si_s76	TRINITY_DN1344_c0_g1	533	553	544	-23.60	-15.70	0.665254237288135	8	2-6,552-548;8-16,546-538;18-19,536-535	1-1,553-553[UP5];7-7,547-547[SIL];17-17,537-537[SIL];20-21,534-533[UP3]	..((.(((((((((.(((((.&.))))).))))))))).))..	UCGAUAGGAAAGAACGAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1344_c0_g1_544_TPlot.pdf
TRINITY_DN1344_c0_g1:545	si_s75	TRINITY_DN1344_c0_g1	534	554	545	-24.00	-15.70	0.654166666666667	9	3-7,552-548;9-17,546-538;19-20,536-535	1-2,554-553[UP5];8-8,547-547[SIL];18-18,537-537[SIL];21-21,534-534[UP3]	.((.(((((((((.(((((..&..))))).))))))))).)).	CGAUAGGAAAGAACGAGAAAG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1344_c0_g1_545_TPlot.pdf
TRINITY_DN1344_c0_g1:548	si_s72	TRINITY_DN1344_c0_g1	537	557	548	-24.10	-16.40	0.680497925311203	9	1-4,557-554;6-10,552-548;12-20,546-538	5-5,553-553[SIL];11-11,547-547[SIL];21-21,537-537[UP3]	.(((((((((.(((((.((((&)))).))))).))))))))).	UAGGAAAGAACGAGAAAGGGA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1344_c0_g1_548_TPlot.pdf
TRINITY_DN1344_c0_g1:549	si_s71	TRINITY_DN1344_c0_g1	538	558	549	-25.70	-18.70	0.727626459143969	8	1-5,558-554;7-11,552-548;13-21,546-538	6-6,553-553[SIL];12-12,547-547[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	AGGAAAGAACGAGAAAGGGAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999998472771868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1344_c0_g1_549_TPlot.pdf
TRINITY_DN1344_c0_g1:550	si_s70	TRINITY_DN1344_c0_g1	539	559	550	-25.80	-18.20	0.705426356589147	8	2-6,558-554;8-12,552-548;14-21,546-539	1-1,559-559[UP5];7-7,553-553[SIL];13-13,547-547[SIL]	((((((((.(((((.(((((.&.))))).))))).))))))))	GGAAAGAACGAGAAAGGGAGC&ACUUCUAUUUUUUUUCUUUCC	3	0.99999999992403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1344_c0_g1_550_TPlot.pdf
TRINITY_DN1344_c0_g1:553	si_s82	TRINITY_DN1344_c0_g1	542	563	553	-28.90	-19.60	0.678200692041523	6.5	1-4,563-560;5-15,558-548;17-21,546-542	x-x,559-559[BULt];16-16,547-547[SIL]	(((((.(((((((((((.((((&))))-))))))))))).)))))	AAGAACGAGAAAGGGAGCGAGA&UUUC-UUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1344_c0_g1_553_TPlot.pdf
TRINITY_DN1344_c0_g1:583	si_a81	TRINITY_DN1344_c0_g1	570	592	583	-23.00	-15.40	0.669565217391304	9.5	1-13,592-580;14-17,577-574	x-x,579-578[BULt];18-21,573-570[UP3]	....((((..(((((((((((((&)))))))))))))--))))....	CAGAUCUUCAGAUGAUGAAGAGC&GUUUUUCAUUAUU--AAGAAAAG	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN1344_c0_g1_583_TPlot.pdf
TRINITY_DN1344_c0_g1:584	si_a80	TRINITY_DN1344_c0_g1	571	593	584	-22.10	-15.50	0.701357466063348	9.5	2-14,592-580;15-18,577-574	1-1,593-593[UP5];x-x,579-578[BULt];19-21,573-571[UP3]	...((((..(((((((((((((.&.)))))))))))))--))))...	AGAUCUUCAGAUGAUGAAGAGCG&UGUUUUUCAUUAUU--AAGAAAA	2	0.986177743532797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1344_c0_g1_584_TPlot.pdf
TRINITY_DN1344_c0_g1:585	si_a79	TRINITY_DN1344_c0_g1	572	594	585	-22.20	-16.00	0.720720720720721	9	1-15,594-580;16-19,577-574	x-x,579-578[BULt];20-21,573-572[UP3]	..((((..(((((((((((((((&)))))))))))))))--))))..	GAUCUUCAGAUGAUGAAGAGCGG&UUGUUUUUCAUUAUU--AAGAAA	2	0.954345126081691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1344_c0_g1_585_TPlot.pdf
TRINITY_DN1344_c0_g1:586	si_a78	TRINITY_DN1344_c0_g1	573	595	586	-22.30	-16.00	0.717488789237668	9	2-16,594-580;17-20,577-574	1-1,595-595[UP5];x-x,579-578[BULt];21-21,573-573[UP3]	.((((..(((((((((((((((.&.)))))))))))))))--)))).	AUCUUCAGAUGAUGAAGAGCGGC&AUUGUUUUUCAUUAUU--AAGAA	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN1344_c0_g1_586_TPlot.pdf
TRINITY_DN1344_c0_g1:587	si_a77	TRINITY_DN1344_c0_g1	574	596	587	-22.20	-15.80	0.711711711711712	10	3-17,594-580;18-21,577-574	1-2,596-595[UP5];x-x,579-578[BULt]	((((..(((((((((((((((..&..)))))))))))))))--))))	UCUUCAGAUGAUGAAGAGCGGCC&AAUUGUUUUUCAUUAUU--AAGA	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN1344_c0_g1_587_TPlot.pdf
TRINITY_DN1344_c0_g1:588	si_a76	TRINITY_DN1344_c0_g1	577	597	588	-21.20	-14.60	0.688679245283019	13	4-18,594-580	1-3,597-595[UP5];19-21,579-577[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCAGAUGAUGAAGAGCGGCCA&AAAUUGUUUUUCAUUAUUAAG	2	0.999899980974621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1344_c0_g1_588_TPlot.pdf
TRINITY_DN1344_c0_g1:589	si_a75	TRINITY_DN1344_c0_g1	578	598	589	-21.30	-14.60	0.685446009389671	14	5-19,594-580	1-4,598-595[UP5];20-21,579-578[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAGAUGAUGAAGAGCGGCCAU&CAAAUUGUUUUUCAUUAUUAA	2	0.999986847153988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1344_c0_g1_589_TPlot.pdf
TRINITY_DN1344_c0_g1:590	si_a74	TRINITY_DN1344_c0_g1	579	599	590	-22.20	-14.60	0.657657657657658	15	6-20,594-580	1-5,599-595[UP5];21-21,579-579[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAUGAUGAAGAGCGGCCAUA&UCAAAUUGUUUUUCAUUAUUA	3	0.999999999977451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1344_c0_g1_590_TPlot.pdf
TRINITY_DN1344_c0_g1:591	si_a494	TRINITY_DN1344_c0_g1	580	601	591	-29.50	-20.70	0.701694915254237	7.5	2-6,600-596;7-18,594-583;20-21,581-580	1-1,601-601[UP5];x-x,595-595[BULt];19-19,582-582[SIL]	((.((((((((((((.(((((.&.)))))-)))))))))))).))	GAUGAUGAAGAGCGGCCAUAUA&AAUAUG-UCGUUUUUCGUCUUC	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1344_c0_g1_591_TPlot.pdf
TRINITY_DN1344_c0_g1:643	si_s69	TRINITY_DN1344_c0_g1	631	652	643	-23.40	-15.50	0.662393162393162	10.5	4-13,649-640;14-21,638-631	1-3,652-650[UP5];x-x,639-639[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GAAAGAGACAGGGAUAGAGAGC&AACUUCUAUUUUU-UUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1344_c0_g1_643_TPlot.pdf
TRINITY_DN1344_c0_g1:674	si_s76	TRINITY_DN1344_c0_g1	661	683	674	-23.60	-17.30	0.733050847457627	7	3-14,681-670;15-21,667-661	1-2,683-682[UP5];x-x,669-668[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	GAGAGAGAUGAAAGAAGAAAACG&AUUUUUUUUCUUUC--CUUUCUU	2	0.999999999999786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1344_c0_g1_674_TPlot.pdf
TRINITY_DN1344_c0_g1:683	si_s81	TRINITY_DN1344_c0_g1	670	692	683	-28.90	-20.00	0.69204152249135	9	1-10,692-683;11-19,680-672	x-x,682-681[BULt];20-21,671-670[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	GAAAGAAGAAAACGGAGAGAGGA&UUUUCUUUCC--UUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1344_c0_g1_683_TPlot.pdf
TRINITY_DN1344_c0_g1:684	si_s80	TRINITY_DN1344_c0_g1	671	693	684	-28.20	-20.20	0.716312056737589	9	2-11,692-683;12-20,680-672	1-1,693-693[UP5];x-x,682-681[BULt];21-21,671-671[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	AAAGAAGAAAACGGAGAGAGGAU&UUUUUCUUUCC--UUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1344_c0_g1_684_TPlot.pdf
TRINITY_DN1344_c0_g1:685	si_s79	TRINITY_DN1344_c0_g1	672	694	685	-26.20	-20.20	0.770992366412214	10	3-12,692-683;13-21,680-672	1-2,694-693[UP5];x-x,682-681[BULt]	(((((((((..((((((((((..&..))))))))))--)))))))))	AAGAAGAAAACGGAGAGAGGAUA&UUUUUUCUUUCC--UUUCUUCUU	2	0.999989222078021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1344_c0_g1_685_TPlot.pdf
TRINITY_DN1344_c0_g1:686	si_s78	TRINITY_DN1344_c0_g1	673	695	686	-26.20	-19.30	0.736641221374046	10	4-13,692-683;14-21,680-673	1-3,695-693[UP5];x-x,682-681[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	AGAAGAAAACGGAGAGAGGAUAG&UUUUUUUCUUUCC--UUUCUUCU	3	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1344_c0_g1_686_TPlot.pdf
TRINITY_DN1344_c0_g1:687	si_s84	TRINITY_DN1344_c0_g1	673	696	687	-32.30	-21.50	0.665634674922601	8	1-3,696-694;5-14,692-683;15-20,679-674	4-4,693-693[SIL];x-x,682-680[BULt];21-21,673-673[UP3]	.((((((...((((((((((.(((&))).))))))))))---)))))).	AGAAGAAAACGGAGAGAGGAUAGG&UCUUUCCUUUCUUC---UUCUUCG	2	0.999999999998824	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1344_c0_g1_687_TPlot.pdf
TRINITY_DN1344_c0_g1:688	si_s83	TRINITY_DN1344_c0_g1	674	697	688	-30.90	-21.10	0.68284789644013	8.5	2-4,696-694;6-15,692-683;16-21,679-674	1-1,697-697[UP5];5-5,693-693[SIL];x-x,682-680[BULt]	((((((...((((((((((.(((.&.))).))))))))))---))))))	GAAGAAAACGGAGAGAGGAUAGGU&UUCUUUCCUUUCUUC---UUCUUC	2	0.999999999999384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1344_c0_g1_688_TPlot.pdf
TRINITY_DN1344_c0_g1:732	si_a428	TRINITY_DN1344_c0_g1	721	741	732	-31.80	-21.90	0.688679245283019	14	6-18,736-724	1-5,741-737[UP5];19-21,723-721[UP3]	...(((((((((((((.....&.....)))))))))))))...	GACCCGAUGGAUCCUGCUGCU&AAAUAUAGGAUCCGUUGGAUA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN1344_c0_g1_732_TPlot.pdf
TRINITY_DN1344_c0_g1:734	si_a426	TRINITY_DN1344_c0_g1	723	743	734	-31.80	-21.90	0.688679245283019	16	8-20,736-724	1-7,743-737[UP5];21-21,723-723[UP3]	.(((((((((((((.......&.......))))))))))))).	CCCGAUGGAUCCUGCUGCUUA&AUAAAUAUAGGAUCCGUUGGA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN1344_c0_g1_734_TPlot.pdf
TRINITY_DN13452_c1_g1:556	si_s77	TRINITY_DN13452_c1_g1	542	565	556	-25.50	-16.60	0.650980392156863	9	1-3,565-563;6-17,560-549;18-21,545-542	4-5,562-561[SIL];x-x,548-546[BULt]	((((...((((((((((((..(((&)))..))))))))))))---))))	GAAGUACAGGGGAAAGAAAUUAGA&UUUUUUUUCUUUCCUUU---CUUC	0	0.952560962493718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN13452_c1_g1_556_TPlot.pdf
TRINITY_DN13453_c0_g1:1093	si_a502	TRINITY_DN13453_c0_g1	1083	1104	1093	-32.10	-21.50	0.669781931464174	10.5	1-7,1104-1098;8-11,1095-1092;13-19,1091-1085	x-x,1097-1096[BULt];12-12,x-x[BULq];20-21,1084-1083[UP3]	..(((((((-((((..(((((((&)))))))--)))).)))))))..	CCUCCAGGG-GGACAAGAGAAAC&GUUUUUC--GUCUUCCUUGGAAU	3	0.999999999956019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN13453_c0_g1_1093_TPlot.pdf
TRINITY_DN13453_c0_g1:1094	si_a501	TRINITY_DN13453_c0_g1	1084	1105	1094	-33.50	-23.90	0.713432835820895	8.5	1-8,1105-1098;9-12,1095-1092;14-20,1091-1085	x-x,1097-1096[BULt];13-13,x-x[BULq];21-21,1084-1084[UP3]	.(((((((-((((..((((((((&))))))))--)))).))))))).	CUCCAGGG-GGACAAGAGAAACG&CGUUUUUC--GUCUUCCUUGGAA	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN13453_c0_g1_1094_TPlot.pdf
TRINITY_DN13453_c0_g1:1095	si_a500	TRINITY_DN13453_c0_g1	1085	1106	1095	-34.40	-23.80	0.691860465116279	7.5	1-9,1106-1098;10-13,1095-1092;15-21,1091-1085	x-x,1097-1096[BULt];14-14,x-x[BULq]	(((((((-((((..(((((((((&)))))))))--)))).)))))))	UCCAGGG-GGACAAGAGAAACGG&UCGUUUUUC--GUCUUCCUUGGA	2	0.997697409833658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN13453_c0_g1_1095_TPlot.pdf
TRINITY_DN13453_c0_g1:1101	si_a75	TRINITY_DN13453_c0_g1	1090	1110	1101	-21.30	-14.00	0.657276995305164	11	1-13,1110-1098	14-21,1097-1090[UP3]	........(((((((((((((&)))))))))))))........	GGGGACAAGAGAAACGGUUUG&CAAAUUGUUUUUCAUUAUUAA	3	0.99999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN13453_c0_g1_1101_TPlot.pdf
TRINITY_DN13453_c0_g1:1103	si_a73	TRINITY_DN13453_c0_g1	1092	1112	1103	-21.90	-16.50	0.753424657534247	8.5	1-15,1112-1098	16-21,1097-1092[UP3]	......(((((((((((((((&)))))))))))))))......	GGACAAGAGAAACGGUUUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN13453_c0_g1_1103_TPlot.pdf
TRINITY_DN13453_c0_g1:1104	si_a72	TRINITY_DN13453_c0_g1	1093	1113	1104	-21.90	-17.20	0.785388127853881	7.5	1-16,1113-1098	17-21,1097-1093[UP3]	.....((((((((((((((((&)))))))))))))))).....	GACAAGAGAAACGGUUUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN13453_c0_g1_1104_TPlot.pdf
TRINITY_DN13453_c0_g1:1105	si_a71	TRINITY_DN13453_c0_g1	1094	1114	1105	-23.30	-17.30	0.742489270386266	7.5	2-17,1113-1098	1-1,1114-1114[UP5];18-21,1097-1094[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACAAGAGAAACGGUUUGAAAC&CUUUCAAAUUGUUUUUCAUUA	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN13453_c0_g1_1105_TPlot.pdf
TRINITY_DN13453_c0_g1:1106	si_a70	TRINITY_DN13453_c0_g1	1095	1115	1106	-23.90	-17.30	0.723849372384937	8.5	3-18,1113-1098	1-2,1115-1114[UP5];19-21,1097-1095[UP3]	...((((((((((((((((..&..))))))))))))))))...	CAAGAGAAACGGUUUGAAACA&UCUUUCAAAUUGUUUUUCAUU	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN13453_c0_g1_1106_TPlot.pdf
TRINITY_DN13453_c0_g1:1108	si_a68	TRINITY_DN13453_c0_g1	1097	1117	1108	-25.40	-17.30	0.681102362204724	10	5-20,1113-1098	1-4,1117-1114[UP5];21-21,1097-1097[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAGAAACGGUUUGAAACAAU&CUUCUUUCAAAUUGUUUUUCA	4	0.999999995586857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN13453_c0_g1_1108_TPlot.pdf
TRINITY_DN13453_c0_g1:1405	si_s67	TRINITY_DN13453_c0_g1	1393	1414	1405	-25.60	-16.80	0.65625	4.5	1-7,1414-1408;9-18,1406-1397;19-21,1395-1393	8-8,1407-1407[SIL];x-x,1396-1396[BULt]	(((.((((((((((.(((((((&))))))).))))))))))-)))	AGGAAAGAGAAAUAAAAGUUGC&GCAACUUCUAUUUUUUUU-CUU	4	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN13453_c0_g1_1405_TPlot.pdf
TRINITY_DN13453_c0_g1:741	si_s772	TRINITY_DN13453_c0_g1	730	750	741	-23.20	-16.50	0.711206896551724	14.5	7-19,744-732	1-6,750-745[UP5];20-21,731-730[UP3]	..(((((((((((((......&......)))))))))))))..	ACUGUAGCAAUAGUGCGUGGA&AUUAAUUACUAUUGCUAUAAA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN13453_c0_g1_741_TPlot.pdf
TRINITY_DN13453_c0_g1:742	si_s771	TRINITY_DN13453_c0_g1	731	751	742	-25.20	-16.50	0.654761904761905	15.5	8-20,744-732	1-7,751-745[UP5];21-21,731-731[UP3]	.(((((((((((((.......&.......))))))))))))).	CUGUAGCAAUAGUGCGUGGAC&GAUUAAUUACUAUUGCUAUAA	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN13453_c0_g1_742_TPlot.pdf
TRINITY_DN1345_c0_g1:567	si_s68	TRINITY_DN1345_c0_g1	555	577	567	-23.10	-15.70	0.67965367965368	7.5	1-8,577-570;9-11,568-566;12-19,564-557	x-x,569-569[BULt];x-x,565-565[BULt];20-21,556-555[UP3]	..((((((((.(((.((((((((&))))))))-)))-))))))))..	GUGGAAAAAAUGAUCAGAAGUUG&CAACUUCU-AUU-UUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1345_c0_g1_567_TPlot.pdf
TRINITY_DN13462_c0_g1:50	si_a3	TRINITY_DN13462_c0_g1	36	59	50	-31.30	-20.82	0.66517571884984	7.5	2-15,58-45;18-20,39-37	1-1,59-59[UP5];16-17,44-40[AILt];21-21,36-36[UP3]	.(((.....((((((((((((((.&.))))))))))))))---..))).	CGGUAUCACUCUCUUCAAUUUCAU&UUGAAAUUGAAGAGA---AAGCCU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN13462_c0_g1_50_TPlot.pdf
TRINITY_DN13462_c0_g1:51	si_a2	TRINITY_DN13462_c0_g1	37	60	51	-30.70	-20.52	0.668403908794788	8.5	3-16,58-45;19-21,39-37	1-2,60-59[UP5];17-18,44-40[AILt]	(((.....((((((((((((((..&..))))))))))))))---..)))	GGUAUCACUCUCUUCAAUUUCAUU&AUUGAAAUUGAAGAGA---AAGCC	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a2_TRINITY_DN13462_c0_g1_51_TPlot.pdf
TRINITY_DN13462_c0_g1:52	si_a1	TRINITY_DN13462_c0_g1	41	61	52	-28.30	-19.40	0.685512367491166	9	4-17,58-45	1-3,61-59[UP5];18-21,44-41[UP3]	....((((((((((((((...&...))))))))))))))....	UCACUCUCUUCAAUUUCAUUA&AAUUGAAAUUGAAGAGAAAGC	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN13462_c0_g1_52_TPlot.pdf
TRINITY_DN13468_c0_g1:1216	si_a686	TRINITY_DN13468_c0_g1	1205	1225	1216	-37.10	-24.20	0.652291105121294	9	1-3,1225-1223;5-17,1221-1209	4-4,1222-1222[SIL];18-21,1208-1205[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UGAAGUGUUCGAGGCUGAGUG&CACGCGGUUUCGAACACAACU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a686_TRINITY_DN13468_c0_g1_1216_TPlot.pdf
TRINITY_DN13468_c0_g1:1220	si_a682	TRINITY_DN13468_c0_g1	1209	1229	1220	-35.50	-23.70	0.667605633802817	11.5	5-7,1225-1223;9-21,1221-1209	1-4,1229-1226[UP5];8-8,1222-1222[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GUGUUCGAGGCUGAGUGUGCU&UAUUCACGCGGUUUCGAACAC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a682_TRINITY_DN13468_c0_g1_1220_TPlot.pdf
TRINITY_DN13468_c0_g1:1253	si_s317	TRINITY_DN13468_c0_g1	1242	1263	1253	-33.10	-22.90	0.691842900302115	6.5	1-3,1263-1261;4-12,1259-1251;14-18,1249-1245	x-x,1260-1260[BULt];13-13,1250-1250[SIL];19-21,1244-1242[UP3]	...(((((.(((((((((.(((&)))-))))))))).)))))...	AACUGUGAGAAGAAGGACAAGA&UCU-GUCCUUCUUGUUACAAAC	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN13468_c0_g1_1253_TPlot.pdf
TRINITY_DN13468_c0_g1:1490	si_s79	TRINITY_DN13468_c0_g1	1479	1499	1490	-26.20	-17.30	0.66030534351145	13	5-8,1495-1492;11-21,1489-1479	1-4,1499-1496[UP5];9-10,1491-1490[SIL]	(((((((((((..((((....&....))))..)))))))))))	AAGAAGAAAGGCUGGAGUGCC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN13468_c0_g1_1490_TPlot.pdf
TRINITY_DN13468_c0_g1:1646	si_s293	TRINITY_DN13468_c0_g1	1635	1655	1646	-34.30	-24.80	0.723032069970846	7.5	1-2,1655-1654;5-18,1651-1638	3-4,1653-1652[SIL];19-21,1637-1635[UP3]	...((((((((((((((..((&))..))))))))))))))...	UCGGCGAUUCCAAUCGAGAAG&CUAGUCGAUUGGAAUUGCGAA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN13468_c0_g1_1646_TPlot.pdf
TRINITY_DN13468_c0_g1:1647	si_s292	TRINITY_DN13468_c0_g1	1636	1656	1647	-36.60	-25.20	0.688524590163934	7.5	2-3,1655-1654;6-19,1651-1638	1-1,1656-1656[UP5];4-5,1653-1652[SIL];20-21,1637-1636[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	CGGCGAUUCCAAUCGAGAAGA&CCUAGUCGAUUGGAAUUGCGA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN13468_c0_g1_1647_TPlot.pdf
TRINITY_DN13468_c0_g1:1649	si_s290	TRINITY_DN13468_c0_g1	1638	1660	1649	-38.10	-25.10	0.658792650918635	9.5	2-3,1659-1658;4-5,1655-1654;8-21,1651-1638	1-1,1660-1660[UP5];x-x,1657-1656[BULt];6-7,1653-1652[SIL]	((((((((((((((..((..((.&.))--))..))))))))))))))	GCGAUUCCAAUCGAGAAGAAGCU&CGC--CUAGUCGAUUGGAAUUGC	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN13468_c0_g1_1649_TPlot.pdf
TRINITY_DN13468_c0_g1:1720	si_s95	TRINITY_DN13468_c0_g1	1707	1729	1720	-36.30	-24.10	0.663911845730028	6.5	1-12,1729-1718;14-14,1716-1716;15-17,1714-1712;18-21,1710-1707	13-13,1717-1717[SIL];x-x,1715-1715[BULt];x-x,1711-1711[BULt]	((((.(((.(.((((((((((((&)))))))))))).)-)))-))))	CCAGCUCCAGUGGUGAAGGAGAA&UUCUUCUUCGCUUC-GGA-UUGG	4	0.999988269255955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN13468_c0_g1_1720_TPlot.pdf
TRINITY_DN13468_c0_g1:1721	si_s94	TRINITY_DN13468_c0_g1	1708	1730	1721	-35.50	-23.60	0.664788732394366	6	1-13,1730-1718;15-15,1716-1716;16-18,1714-1712;19-21,1710-1708	14-14,1717-1717[SIL];x-x,1715-1715[BULt];x-x,1711-1711[BULt]	(((.(((.(.(((((((((((((&))))))))))))).)-)))-)))	CAGCUCCAGUGGUGAAGGAGAAG&CUUCUUCUUCGCUUC-GGA-UUG	4	0.999999944098155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN13468_c0_g1_1721_TPlot.pdf
TRINITY_DN13468_c0_g1:1722	si_s93	TRINITY_DN13468_c0_g1	1710	1731	1722	-34.80	-23.00	0.660919540229885	7.5	2-14,1730-1718;16-16,1716-1716;17-19,1714-1712	1-1,1731-1731[UP5];15-15,1717-1717[SIL];x-x,1715-1715[BULt];20-21,1711-1710[UP3]	..(((.(.(((((((((((((.&.))))))))))))).)-)))..	GCUCCAGUGGUGAAGGAGAAGG&UCUUCUUCUUCGCUUC-GGAUU	3	0.999999999999185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN13468_c0_g1_1722_TPlot.pdf
TRINITY_DN13468_c0_g1:1723	si_s92	TRINITY_DN13468_c0_g1	1711	1732	1723	-34.90	-24.60	0.70487106017192	6	1-15,1732-1718;17-17,1716-1716;18-20,1714-1712	16-16,1717-1717[SIL];x-x,1715-1715[BULt];21-21,1711-1711[UP3]	.(((.(.(((((((((((((((&))))))))))))))).)-))).	CUCCAGUGGUGAAGGAGAAGGA&UUCUUCUUCUUCGCUUC-GGAU	3	0.999976733936909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN13468_c0_g1_1723_TPlot.pdf
TRINITY_DN13468_c0_g1:1725	si_s90	TRINITY_DN13468_c0_g1	1713	1734	1725	-35.30	-23.20	0.657223796033994	7	2-17,1733-1718;19-19,1716-1716;20-21,1714-1713	1-1,1734-1734[UP5];18-18,1717-1717[SIL];x-x,1715-1715[BULt]	((.(.((((((((((((((((.&.)))))))))))))))).)-))	CCAGUGGUGAAGGAGAAGGAGA&CUUUCUUCUUCUUCGCUUC-GG	2	0.999999999921022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN13468_c0_g1_1725_TPlot.pdf
TRINITY_DN13468_c0_g1:1728	si_s87	TRINITY_DN13468_c0_g1	1717	1737	1728	-32.90	-21.50	0.653495440729483	11.5	5-20,1733-1718	1-4,1737-1734[UP5];21-21,1717-1717[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGUGAAGGAGAAGGAGAUGU&UUCCUUUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN13468_c0_g1_1728_TPlot.pdf
TRINITY_DN13468_c0_g1:1813	si_a112	TRINITY_DN13468_c0_g1	1802	1822	1813	-26.20	-17.40	0.66412213740458	14	6-19,1817-1804	1-5,1822-1818[UP5];20-21,1803-1802[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGGAACAAGCUUGUGACUCA&UAAAAUACGAGCUUGUUUUAU	2	0.998779475043878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN13468_c0_g1_1813_TPlot.pdf
TRINITY_DN13468_c0_g1:3631	si_s797	TRINITY_DN13468_c0_g1	3620	3640	3631	-30.00	-22.70	0.756666666666667	6	1-12,3640-3629;14-17,3627-3624;19-20,3622-3621	13-13,3628-3628[SIL];18-18,3623-3623[SIL];21-21,3620-3620[UP3]	.((.((((.((((((((((((&)))))))))))).)))).)).	AAGGGAGGUUAAGAUGCGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN13468_c0_g1_3631_TPlot.pdf
TRINITY_DN13468_c0_g1:3632	si_s796	TRINITY_DN13468_c0_g1	3621	3641	3632	-30.30	-23.50	0.775577557755776	5	1-13,3641-3629;15-18,3627-3624;20-21,3622-3621	14-14,3628-3628[SIL];19-19,3623-3623[SIL]	((.((((.(((((((((((((&))))))))))))).)))).))	AGGGAGGUUAAGAUGCGAGCU&AGCUCGUAUUUUAUCUUCGUU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN13468_c0_g1_3632_TPlot.pdf
TRINITY_DN13468_c0_g1:3636	si_s792	TRINITY_DN13468_c0_g1	3624	3645	3636	-28.50	-23.80	0.835087719298246	6.5	3-17,3643-3629;18-21,3627-3624	1-2,3645-3644[UP5];x-x,3628-3628[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GAGGUUAAGAUGCGAGCUUGAU&AACAAGCUCGUAUUUUA-UCUU	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN13468_c0_g1_3636_TPlot.pdf
TRINITY_DN13468_c0_g1:3637	si_s791	TRINITY_DN13468_c0_g1	3625	3646	3637	-28.50	-22.50	0.789473684210526	8	4-18,3643-3629;19-21,3627-3625	1-3,3646-3644[UP5];x-x,3628-3628[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	AGGUUAAGAUGCGAGCUUGAUA&AAACAAGCUCGUAUUUUA-UCU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN13468_c0_g1_3637_TPlot.pdf
TRINITY_DN13468_c0_g1:3641	si_s787	TRINITY_DN13468_c0_g1	3630	3650	3641	-26.20	-19.80	0.755725190839695	14	8-21,3643-3630	1-7,3650-3644[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAUGCGAGCUUGAUAAGUC&UAUAAAACAAGCUCGUAUUUU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN13468_c0_g1_3641_TPlot.pdf
TRINITY_DN13468_c0_g1:3642	si_s786	TRINITY_DN13468_c0_g1	3631	3651	3642	-27.90	-19.10	0.684587813620072	16	9-21,3643-3631	1-8,3651-3644[UP5]	(((((((((((((........&........)))))))))))))	AGAUGCGAGCUUGAUAAGUCA&CUAUAAAACAAGCUCGUAUUU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s786_TRINITY_DN13468_c0_g1_3642_TPlot.pdf
TRINITY_DN13468_c0_g1:3802	si_a32	TRINITY_DN13468_c0_g1	3791	3812	3802	-35.90	-25.30	0.704735376044568	9	2-6,3811-3807;7-10,3805-3802;12-21,3800-3791	1-1,3812-3812[UP5];x-x,3806-3806[BULt];11-11,3801-3801[SIL]	((((((((((.((((.(((((.&.)))))-)))).))))))))))	ACCUGCUGGUGUUGGCGACUGU&UUAGUU-CUAAGACCGGUAGGU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN13468_c0_g1_3802_TPlot.pdf
TRINITY_DN1347_c0_g1:1293	si_s78	TRINITY_DN1347_c0_g1	1281	1302	1293	-26.20	-17.30	0.66030534351145	10.5	1-12,1302-1291;13-14,1289-1288;16-21,1286-1281	x-x,1290-1290[BULt];15-15,1287-1287[SIL]	((((((.((.((((((((((((&))))))))))))-)).))))))	AGGAGGCGGCGGAGGAGGAGGA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1347_c0_g1_1293_TPlot.pdf
TRINITY_DN1347_c0_g1:1294	si_s91	TRINITY_DN1347_c0_g1	1277	1303	1294	-34.70	-23.50	0.677233429394813	12.5	1-16,1303-1288;17-19,1281-1279	x-x,1287-1282[BULt];20-21,1278-1277[UP3]	..(((......((((((((((((((((&))))))))))))))))------)))..	GACGAGGAGGCGGCGGAGGAGGAGGAA&UUUCUUCUUCUUCGCU------UCGGA	4	0.999999999985793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN1347_c0_g1_1294_TPlot.pdf
TRINITY_DN1347_c0_g1:1296	si_s89	TRINITY_DN1347_c0_g1	1279	1305	1296	-35.30	-26.30	0.745042492917847	11	2-18,1304-1288;19-21,1281-1279	1-1,1305-1305[UP5];x-x,1287-1282[BULt]	(((......(((((((((((((((((.&.)))))))))))))))))------)))	CGAGGAGGCGGCGGAGGAGGAGGAAGA&CCUUUCUUCUUCUUCGCU------UCG	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1347_c0_g1_1296_TPlot.pdf
TRINITY_DN1347_c0_g1:1297	si_s88	TRINITY_DN1347_c0_g1	1286	1306	1297	-34.80	-25.90	0.744252873563218	9	3-19,1304-1288	1-2,1306-1305[UP5];20-21,1287-1286[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCGGCGGAGGAGGAGGAAGAU&UCCUUUCUUCUUCUUCGCUUC	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1347_c0_g1_1297_TPlot.pdf
TRINITY_DN1347_c0_g1:1298	si_s87	TRINITY_DN1347_c0_g1	1287	1307	1298	-32.90	-25.90	0.787234042553192	9.5	4-20,1304-1288	1-3,1307-1305[UP5];21-21,1287-1287[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGGCGGAGGAGGAGGAAGAUU&UUCCUUUCUUCUUCUUCGCUU	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1347_c0_g1_1298_TPlot.pdf
TRINITY_DN1347_c0_g1:1299	si_s86	TRINITY_DN1347_c0_g1	1288	1308	1299	-32.90	-25.90	0.787234042553192	10.5	5-21,1304-1288	1-4,1308-1305[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGCGGAGGAGGAGGAAGAUUU&UUUCCUUUCUUCUUCUUCGCU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1347_c0_g1_1299_TPlot.pdf
TRINITY_DN1347_c0_g1:1300	si_s85	TRINITY_DN1347_c0_g1	1289	1309	1300	-33.80	-24.70	0.730769230769231	12	6-21,1304-1289	1-5,1309-1305[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCGGAGGAGGAGGAAGAUUUU&CUUUCCUUUCUUCUUCUUCGC	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1347_c0_g1_1300_TPlot.pdf
TRINITY_DN1347_c0_g1:1301	si_a499	TRINITY_DN1347_c0_g1	1290	1314	1301	-35.20	-24.80	0.704545454545454	13	1-5,1314-1310;6-10,1305-1301;12-19,1299-1292;21-21,1290-1290	x-x,1309-1306[BULt];11-11,1300-1300[SIL];20-20,1291-1291[SIL]	(.((((((((.(((((....(((((&)))))----))))).)))))))).)	CGGAGGAGGAGGAAGAUUUUACGAC&GUCGU----UUUUCGUCUUCCUUGG	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1347_c0_g1_1301_TPlot.pdf
TRINITY_DN1347_c0_g1:1302	si_a498	TRINITY_DN1347_c0_g1	1291	1315	1302	-33.50	-22.80	0.680597014925373	14	2-6,1314-1310;7-11,1305-1301;13-20,1299-1292	1-1,1315-1315[UP5];x-x,1309-1306[BULt];12-12,1300-1300[SIL];21-21,1291-1291[UP3]	.((((((((.(((((....(((((.&.)))))----))))).)))))))).	GGAGGAGGAGGAAGAUUUUACGACU&UGUCGU----UUUUCGUCUUCCUUG	3	0.999999992920476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1347_c0_g1_1302_TPlot.pdf
TRINITY_DN1347_c0_g1:296	si_s71	TRINITY_DN1347_c0_g1	286	305	296	-25.70	-17.00	0.66147859922179	9.5	1-10,305-296;14-20,293-287	11-13,295-294[AILq];21-21,286-286[UP3]	.(((((((..-((((((((((&))))))))))...))))))).	UGGGGAGGUC-AAAGUAGAGG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1347_c0_g1_296_TPlot.pdf
TRINITY_DN13480_c0_g1:1042	si_s151	TRINITY_DN13480_c0_g1	1022	1051	1042	-42.10	-27.60	0.655581947743468	15.5	1-4,1051-1048;6-10,1046-1042;11-13,1037-1035;14-21,1029-1022	5-5,1047-1047[SIL];x-x,1041-1038[BULt];x-x,1034-1030[BULt]	((((((((.....(((....(((((.((((&)))).)))))----)))-----))))))))	GGCCAUGAUGAUCGCCAAUGUCCUUAGGGU&ACCCAAAGGA----GGU-----UCAUGGCC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s151_TRINITY_DN13480_c0_g1_1042_TPlot.pdf
TRINITY_DN13480_c0_g1:910	si_a787	TRINITY_DN13480_c0_g1	899	921	910	-26.30	-17.48	0.664638783269962	13.5	1-5,921-917;8-20,912-900	6-7,916-913[AILt];21-21,899-899[UP3]	.(((((((((((((....(((((&)))))--..))))))))))))).	GGGAAGGUGGAAGGCAAAAGAGG&CUUCU--AUUUUUCUAUUUUCCA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN13480_c0_g1_910_TPlot.pdf
TRINITY_DN13480_c4_g1:158	si_s82	TRINITY_DN13480_c4_g1	146	167	158	-28.90	-19.40	0.671280276816609	11.5	6-11,162-157;12-21,155-146	1-5,167-163[UP5];x-x,156-156[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GAGAAGAAGAUAAGGAACUGCU&UUUCUUUCCUU-UCUUCUUCUU	1	0.579921405485594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN13480_c4_g1_158_TPlot.pdf
TRINITY_DN13484_c0_g3:208	si_a418	TRINITY_DN13484_c0_g3	196	217	208	-21.20	-14.30	0.674528301886792	7	2-7,216-211;9-12,209-206;13-21,204-196	1-1,217-217[UP5];8-8,210-210[SIL];x-x,205-205[BULt]	(((((((((.((((.((((((.&.)))))).))))-)))))))))	GUCCUAUGUGUUAUAUAGAUAA&AUAUUUAAAUAA-AUAUAGGAU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN13484_c0_g3_208_TPlot.pdf
TRINITY_DN1348_c0_g1:2483	si_a697	TRINITY_DN1348_c0_g1	2471	2492	2483	-35.50	-24.70	0.695774647887324	7	4-16,2489-2477;18-18,2475-2475;19-21,2473-2471	1-3,2492-2490[UP5];17-17,2476-2476[SIL];x-x,2474-2474[BULt]	(((.(.(((((((((((((...&...))))))))))))).)-)))	UGGUAUUGUACCAGUUGUGAUA&GAACACAACUGGUACAUU-CCA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN1348_c0_g1_2483_TPlot.pdf
TRINITY_DN1348_c0_g1:2486	si_a694	TRINITY_DN1348_c0_g1	2475	2495	2486	-33.00	-22.10	0.66969696969697	13	7-19,2489-2477	1-6,2495-2490[UP5];20-21,2476-2475[UP3]	..(((((((((((((......&......)))))))))))))..	AUUGUACCAGUUGUGAUAAUA&UUCGAACACAACUGGUACAUU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a694_TRINITY_DN1348_c0_g1_2486_TPlot.pdf
TRINITY_DN1348_c0_g1:2555	si_s234	TRINITY_DN1348_c0_g1	2544	2564	2555	-31.60	-24.30	0.768987341772152	4.5	1-8,2564-2557;10-17,2555-2548;19-21,2546-2544	9-9,2556-2556[SIL];18-18,2547-2547[SIL]	(((.((((((((.((((((((&)))))))).)))))))).)))	AUGGCUGUUGAUACCUUGUUC&GAAUAAGGAAUCAAUAGGCAU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s234_TRINITY_DN1348_c0_g1_2555_TPlot.pdf
TRINITY_DN1348_c0_g1:2557	si_s232	TRINITY_DN1348_c0_g1	2546	2566	2557	-33.20	-22.00	0.662650602409638	7.5	3-10,2564-2557;12-19,2555-2548;21-21,2546-2546	1-2,2566-2565[UP5];11-11,2556-2556[SIL];20-20,2547-2547[SIL]	(.((((((((.((((((((..&..)))))))).)))))))).)	GGCUGUUGAUACCUUGUUCUU&GUGAAUAAGGAAUCAAUAGGC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s232_TRINITY_DN1348_c0_g1_2557_TPlot.pdf
TRINITY_DN1348_c0_g1:2559	si_s230	TRINITY_DN1348_c0_g1	2548	2570	2559	-32.30	-22.70	0.702786377708978	7.5	1-4,2570-2567;5-12,2564-2557;14-21,2555-2548	x-x,2566-2565[BULt];13-13,2556-2556[SIL]	((((((((.((((((((..((((&))))--)))))))).))))))))	CUGUUGAUACCUUGUUCUUAUGC&GCGU--GAAUAAGGAAUCAAUAG	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s230_TRINITY_DN1348_c0_g1_2559_TPlot.pdf
TRINITY_DN13491_c0_g1:253	si_a405	TRINITY_DN13491_c0_g1	242	262	253	-19.80	-13.10	0.661616161616162	7.5	1-3,262-260;5-17,258-246	4-4,259-259[SIL];18-21,245-242[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AUCUGUAUAAACAAAACCGUU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN13491_c0_g1_253_TPlot.pdf
TRINITY_DN13491_c0_g1:332	si_a411	TRINITY_DN13491_c0_g1	319	341	332	-17.90	-12.20	0.681564245810056	8.5	1-11,341-331;13-20,327-320	12-12,330-328[AILt];21-21,319-319[UP3]	.((((((((...(((((((((((&)))))))))))--.)))))))).	UUUUGUUUACUUGUAUAAACAAA&UUUGUUUAUAU--UUAAAUAAAU	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN13491_c0_g1_332_TPlot.pdf
TRINITY_DN13491_c0_g1:340	si_a403	TRINITY_DN13491_c0_g1	329	349	340	-22.00	-14.90	0.677272727272727	7.5	2-5,348-345;7-19,343-331	1-1,349-349[UP5];6-6,344-344[SIL];20-21,330-329[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UUGUAUAAACAAAACCGUUUA&AGAAUUGUUUUGUUUAUAUUU	2	0.999999435738506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN13491_c0_g1_340_TPlot.pdf
TRINITY_DN13491_c0_g1:727	si_a865	TRINITY_DN13491_c0_g1	716	736	727	-24.00	-15.90	0.6625	7	1-4,736-733;6-10,731-727;12-14,725-723;16-21,721-716	5-5,732-732[SIL];11-11,726-726[SIL];15-15,722-722[SIL]	((((((.(((.(((((.((((&)))).))))).))).))))))	GACUAGUUCUCUAGUAUUUGG&CCAAUUAUUAAAGAUUUAGUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN13491_c0_g1_727_TPlot.pdf
TRINITY_DN13499_c0_g1:2253	si_a788	TRINITY_DN13499_c0_g1	2245	2262	2253	-24.80	-16.90	0.681451612903226	5.5	1-12,2262-2251;16-21,2250-2245	13-15,x-x[BULq]	((((((---((((((((((((&))))))))))))...))))))	UUGGAG---AGAGAAAUGGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999325556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN13499_c0_g1_2253_TPlot.pdf
TRINITY_DN13499_c0_g1:2254	si_s72	TRINITY_DN13499_c0_g1	2245	2262	2254	-24.10	-15.70	0.651452282157676	10.5	1-9,2262-2254;13-19,2253-2247	10-12,x-x[BULq];20-21,2246-2245[UP3]	..(((((((---(((((((((&)))))))))...)))))))..	UUGGAGAGA---GAAAUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13499_c0_g1_2254_TPlot.pdf
TRINITY_DN13499_c0_g1:3478	si_a407	TRINITY_DN13499_c0_g1	3467	3487	3478	-19.80	-14.00	0.707070707070707	7	1-17,3487-3471	18-21,3470-3467[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAUAAAAUAUAAAUGAAACGA&UUGUUUUGUUUAUAUUUAAAU	4	0.99999999196975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN13499_c0_g1_3478_TPlot.pdf
TRINITY_DN13502_c0_g1:286	si_a401	TRINITY_DN13502_c0_g1	275	295	286	-22.60	-14.70	0.650442477876106	6	2-5,294-291;7-20,289-276	1-1,295-295[UP5];6-6,290-290[SIL];21-21,275-275[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UUAUAAACAAAACAACUUUGA&AUAGAAUUGUUUUGUUUAUAU	2	0.999999986173799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN13502_c0_g1_286_TPlot.pdf
TRINITY_DN13504_c0_g2:318	si_s92	TRINITY_DN13504_c0_g2	309	327	318	-34.90	-22.90	0.656160458452722	5.5	1-15,327-313;18-20,312-310	16-17,x-x[BULq];21-21,309-309[UP3]	.(((--(((((((((((((((&)))))))))))))))..))).	UUCC--AGUGGGGAAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	2	0.999999999024167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN13504_c0_g2_318_TPlot.pdf
TRINITY_DN13504_c0_g2:319	si_s91	TRINITY_DN13504_c0_g2	310	328	319	-34.70	-23.00	0.662824207492795	5.5	2-16,327-313;19-21,312-310	1-1,328-328[UP5];17-18,x-x[BULq]	(((--(((((((((((((((.&.)))))))))))))))..)))	UCC--AGUGGGGAAGAAGAAU&UUUCUUCUUCUUCGCUUCGGA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN13504_c0_g2_319_TPlot.pdf
TRINITY_DN13507_c0_g1:26	si_a676	TRINITY_DN13507_c0_g1	15	35	26	-34.00	-23.50	0.691176470588235	13	7-21,29-15	1-6,35-30[UP5]	(((((((((((((((......&......)))))))))))))))	GGGACCGCGUGGAUAUUGUUU&AUUCCUUAUUCACGCGGUUUC	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN13507_c0_g1_26_TPlot.pdf
TRINITY_DN1350_c0_g1:2466	si_a614	TRINITY_DN1350_c0_g1	2456	2475	2466	-35.20	-24.50	0.696022727272727	8	2-12,2474-2464;14-17,2463-2460	1-1,2475-2475[UP5];13-13,x-x[BULq];18-21,2459-2456[UP3]	....((((-(((((((((((.&.))))))))))).))))....	GCACCGCC-GGUCGGUUGGAC&UUCCAAUCGACUAGGCGUAUU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a614_TRINITY_DN1350_c0_g1_2466_TPlot.pdf
TRINITY_DN1350_c0_g1:3105	si_s623	TRINITY_DN1350_c0_g1	3097	3114	3105	-36.40	-25.84	0.70989010989011	6	1-11,3114-3104;16-21,3102-3097	12-15,3103-3103[AILq]	((((((.---(((((((((((&)))))))))))....))))))	CCUGCGC---GAUCGCUUGGG&UCCAAGCGAUCUUUUCGUAGG	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN1350_c0_g1_3105_TPlot.pdf
TRINITY_DN1350_c0_g1:3381	si_s630	TRINITY_DN1350_c0_g1	3370	3389	3381	-35.60	-23.50	0.660112359550562	6.5	2-7,3388-3383;9-11,3382-3380;13-21,3378-3370	1-1,3389-3389[UP5];8-8,x-x[BULq];12-12,3379-3379[SIL]	(((((((((.(((-((((((.&.)))))).))).)))))))))	GCGAGCGCUGACG-AAAGAUG&GAUCUUUUCGUAGGCGUUUGC	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN1350_c0_g1_3381_TPlot.pdf
TRINITY_DN1350_c0_g1:3382	si_a499	TRINITY_DN1350_c0_g1	3370	3391	3382	-35.20	-23.20	0.659090909090909	6.5	1-13,3391-3379;16-16,3376-3376;17-20,3374-3371	14-15,3378-3377[SIL];x-x,3375-3375[BULt];21-21,3370-3370[UP3]	.((((.(..(((((((((((((&)))))))))))))..)-)))).	GCGAGCGCUGACGAAAGAUGAC&GUCGUUUUUCGUCUUC-CUUGG	2	0.999999820446701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1350_c0_g1_3382_TPlot.pdf
TRINITY_DN1350_c0_g1:3383	si_a498	TRINITY_DN1350_c0_g1	3371	3392	3383	-33.50	-23.90	0.713432835820895	5.5	1-14,3392-3379;17-17,3376-3376;18-21,3374-3371	15-16,3378-3377[SIL];x-x,3375-3375[BULt]	((((.(..((((((((((((((&))))))))))))))..)-))))	CGAGCGCUGACGAAAGAUGACA&UGUCGUUUUUCGUCUUC-CUUG	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1350_c0_g1_3383_TPlot.pdf
TRINITY_DN1350_c0_g1:3384	si_a497	TRINITY_DN1350_c0_g1	3372	3393	3384	-32.00	-21.50	0.671875	6.5	2-15,3392-3379;18-18,3376-3376;19-21,3374-3372	1-1,3393-3393[UP5];16-17,3378-3377[SIL];x-x,3375-3375[BULt]	(((.(..((((((((((((((.&.))))))))))))))..)-)))	GAGCGCUGACGAAAGAUGACAA&AUGUCGUUUUUCGUCUUC-CUU	3	0.999999999999948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1350_c0_g1_3384_TPlot.pdf
TRINITY_DN1350_c0_g1:3387	si_a494	TRINITY_DN1350_c0_g1	3376	3396	3387	-29.50	-20.00	0.677966101694915	12	5-18,3392-3379	1-4,3396-3393[UP5];19-21,3378-3376[UP3]	...((((((((((((((....&....))))))))))))))...	GCUGACGAAAGAUGACAAGCC&AAUAUGUCGUUUUUCGUCUUC	2	0.999994427443683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1350_c0_g1_3387_TPlot.pdf
TRINITY_DN1350_c0_g1:3388	si_a493	TRINITY_DN1350_c0_g1	3377	3403	3388	-29.50	-21.40	0.725423728813559	17	1-5,3403-3399;6-19,3392-3379	x-x,3398-3393[BULt];20-21,3378-3377[UP3]	..((((((((((((((......(((((&)))))------))))))))))))))..	CUGACGAAAGAUGACAAGCCUGUGUUC&GAAUA------UGUCGUUUUUCGUCUU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN1350_c0_g1_3388_TPlot.pdf
TRINITY_DN1350_c0_g1:3390	si_a491	TRINITY_DN1350_c0_g1	3379	3405	3390	-29.90	-21.10	0.705685618729097	17.5	3-7,3403-3399;8-21,3392-3379	1-2,3405-3404[UP5];x-x,3398-3393[BULt]	((((((((((((((......(((((..&..)))))------))))))))))))))	GACGAAAGAUGACAAGCCUGUGUUCAA&UAGAAUA------UGUCGUUUUUCGUC	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN1350_c0_g1_3390_TPlot.pdf
TRINITY_DN1350_c0_g1:3534	si_s277	TRINITY_DN1350_c0_g1	3523	3542	3534	-33.10	-21.82	0.659214501510574	13	4-9,3539-3534;14-21,3530-3523	1-3,3542-3540[UP5];10-13,3533-3531[AILq]	((((((((...-((((((...&...))))))....))))))))	GCUGGGCGGGG-AUGUCGUGG&AAUCGACAUAAUACGCCUAGU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s277_TRINITY_DN1350_c0_g1_3534_TPlot.pdf
TRINITY_DN1350_c0_g1:3546	si_a311	TRINITY_DN1350_c0_g1	3535	3554	3546	-32.70	-23.02	0.703975535168196	11	1-7,3554-3548;12-20,3544-3536	8-11,3547-3545[AILq];21-21,3535-3535[UP3]	.(((((((((...-(((((((&)))))))....))))))))).	UGUCGUGGAUUAC-CCGAGCG&CGCUUGGAUUUAUCCAUGAUU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN1350_c0_g1_3546_TPlot.pdf
TRINITY_DN1350_c0_g1:3569	si_a328	TRINITY_DN1350_c0_g1	3556	3578	3569	-30.10	-20.00	0.664451827242525	9.5	1-9,3578-3570;12-19,3567-3560;20-21,3557-3556	10-11,3569-3568[SIL];x-x,3559-3558[BULt]	((..((((((((..(((((((((&)))))))))..))))))))--))	GGCCGGCAAGGACGAGAGAGAUC&GAUUUUUUUAUUCCUUGUC--CC	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1350_c0_g1_3569_TPlot.pdf
TRINITY_DN1350_c0_g1:3570	si_a327	TRINITY_DN1350_c0_g1	3559	3579	3570	-28.40	-20.00	0.704225352112676	9.5	2-10,3578-3570;13-20,3567-3560	1-1,3579-3579[UP5];11-12,3569-3568[SIL];21-21,3559-3559[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	CGGCAAGGACGAGAGAGAUCU&UGAUUUUUUUAUUCCUUGUCC	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1350_c0_g1_3570_TPlot.pdf
TRINITY_DN1350_c0_g1:3571	si_a326	TRINITY_DN1350_c0_g1	3560	3580	3571	-26.20	-20.00	0.763358778625954	9.5	3-11,3578-3570;14-21,3567-3560	1-2,3580-3579[UP5];12-13,3569-3568[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	GGCAAGGACGAGAGAGAUCUC&AUGAUUUUUUUAUUCCUUGUC	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1350_c0_g1_3571_TPlot.pdf
TRINITY_DN1350_c0_g1:3572	si_a325	TRINITY_DN1350_c0_g1	3561	3581	3572	-25.90	-17.60	0.67953667953668	10.5	4-12,3578-3570;15-21,3567-3561	1-3,3581-3579[UP5];13-14,3569-3568[SIL]	(((((((..(((((((((...&...)))))))))..)))))))	GCAAGGACGAGAGAGAUCUCG&CAUGAUUUUUUUAUUCCUUGU	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN1350_c0_g1_3572_TPlot.pdf
TRINITY_DN1350_c0_g1:3768	si_s808	TRINITY_DN1350_c0_g1	3757	3778	3768	-28.60	-19.60	0.685314685314685	10.5	2-7,3777-3772;8-17,3770-3761	1-1,3778-3778[UP5];x-x,3771-3771[BULt];18-21,3760-3757[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	GGUUGAGGGGGUGAUCGAGGAG&AUCUUCG-UUACCUUUUCUUAA	3	0.999999403778522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1350_c0_g1_3768_TPlot.pdf
TRINITY_DN1350_c0_g1:3770	si_s806	TRINITY_DN1350_c0_g1	3759	3780	3770	-28.60	-19.60	0.685314685314685	12.5	4-9,3777-3772;10-19,3770-3761	1-3,3780-3778[UP5];x-x,3771-3771[BULt];20-21,3760-3759[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	UUGAGGGGGUGAUCGAGGAGAU&UUAUCUUCG-UUACCUUUUCUU	2	0.99997118933767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1350_c0_g1_3770_TPlot.pdf
TRINITY_DN1350_c0_g1:3773	si_s804	TRINITY_DN1350_c0_g1	3761	3782	3773	-27.90	-19.20	0.688172043010753	14	6-11,3777-3772;12-21,3770-3761	1-5,3782-3778[UP5];x-x,3771-3771[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GAGGGGGUGAUCGAGGAGAUCC&UUUUAUCUUCG-UUACCUUUUC	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN1350_c0_g1_3773_TPlot.pdf
TRINITY_DN13512_c0_g2:2605	si_a877	TRINITY_DN13512_c0_g2	2594	2614	2605	-27.00	-18.60	0.688888888888889	6	3-12,2612-2603;14-21,2601-2594	1-2,2614-2613[UP5];13-13,2602-2602[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	UAUAUUGAAUGUAACUAGAGA&GAUUUAGUUGCAAUCAAUAUA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN13512_c0_g2_2605_TPlot.pdf
TRINITY_DN13512_c0_g2:2861	si_s67	TRINITY_DN13512_c0_g2	2850	2870	2861	-25.60	-21.10	0.82421875	5	1-9,2870-2862;11-19,2860-2852	10-10,2861-2861[SIL];20-21,2851-2850[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GUGAAAGGAAAAAGAAGUUGC&GCAACUUCUAUUUUUUUUCUU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN13512_c0_g2_2861_TPlot.pdf
TRINITY_DN13512_c0_g2:2862	si_s66	TRINITY_DN13512_c0_g2	2851	2871	2862	-26.30	-21.20	0.806083650190114	5	2-10,2870-2862;12-20,2860-2852	1-1,2871-2871[UP5];11-11,2861-2861[SIL];21-21,2851-2851[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UGAAAGGAAAAAGAAGUUGCA&AGCAACUUCUAUUUUUUUUCU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN13512_c0_g2_2862_TPlot.pdf
TRINITY_DN13512_c0_g2:2863	si_s65	TRINITY_DN13512_c0_g2	2852	2872	2863	-26.00	-20.80	0.8	6	3-11,2870-2862;13-21,2860-2852	1-2,2872-2871[UP5];12-12,2861-2861[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GAAAGGAAAAAGAAGUUGCAU&UAGCAACUUCUAUUUUUUUUC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN13512_c0_g2_2863_TPlot.pdf
TRINITY_DN13512_c0_g2:3501	si_a221	TRINITY_DN13512_c0_g2	3490	3510	3501	-25.20	-17.00	0.674603174603175	14.5	7-19,3504-3492	1-6,3510-3505[UP5];20-21,3491-3490[UP3]	..(((((((((((((......&......)))))))))))))..	AAAUGGAAACAUGGGAUCCUG&AUUAAACUCAUGUUUCUAUAA	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN13512_c0_g2_3501_TPlot.pdf
TRINITY_DN13512_c0_g2:3908	si_a124	TRINITY_DN13512_c0_g2	3897	3917	3908	-25.10	-16.50	0.657370517928287	11	3-8,3915-3910;10-19,3908-3899	1-2,3917-3916[UP5];9-9,3909-3909[SIL];20-21,3898-3897[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UCUGCUGUUGCUUUAGGAUUC&UUGUUUUAUAGCAAUAGUAAU	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN13512_c0_g2_3908_TPlot.pdf
TRINITY_DN13512_c0_g2:4175	si_a642	TRINITY_DN13512_c0_g2	4165	4184	4175	-25.90	-17.20	0.664092664092664	3.5	1-14,4184-4171;16-20,4170-4166	15-15,x-x[BULq];21-21,4165-4165[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	AUGAUA-AUUACUCAAGAAAA&UUUUUUUGAGUAAUAUAUCGG	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN13512_c0_g2_4175_TPlot.pdf
TRINITY_DN13512_c0_g2:4176	si_a641	TRINITY_DN13512_c0_g2	4166	4185	4176	-23.60	-17.20	0.728813559322034	4	2-15,4184-4171;17-20,4170-4167	1-1,4185-4185[UP5];16-16,x-x[BULq];21-21,4166-4166[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	UGAUA-AUUACUCAAGAAAAA&AUUUUUUUGAGUAAUAUAUCG	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN13512_c0_g2_4176_TPlot.pdf
TRINITY_DN13512_c0_g2:4177	si_a640	TRINITY_DN13512_c0_g2	4167	4186	4177	-24.10	-16.50	0.684647302904564	5	3-16,4184-4171;18-21,4170-4167	1-2,4186-4185[UP5];17-17,x-x[BULq]	((((-((((((((((((((..&..)))))))))))))).))))	GAUA-AUUACUCAAGAAAAAC&GAUUUUUUUGAGUAAUAUAUC	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN13512_c0_g2_4177_TPlot.pdf
TRINITY_DN13513_c0_g1:833	si_a495	TRINITY_DN13513_c0_g1	822	842	833	-31.90	-21.54	0.675235109717868	11.5	1-7,842-836;13-21,830-822	8-12,835-831[SIL]	(((((((((.....(((((((&))))))).....)))))))))	GGAAGAUGAUAUUAGACAUGU&AUAUGUCGUUUUUCGUCUUCC	4	0.999999929848069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN13513_c0_g1_833_TPlot.pdf
TRINITY_DN13513_c0_g2:206	si_s13	TRINITY_DN13513_c0_g2	194	215	206	-22.90	-15.80	0.689956331877729	6.5	2-12,214-204;13-15,202-200;17-21,198-194	1-1,215-215[UP5];x-x,203-203[BULt];16-16,199-199[SIL]	(((((.(((.(((((((((((.&.)))))))))))-))).)))))	CAGUCUAUAUUAGUAGUAGUAU&UUAUUAUUACUA-UAUUGAUUG	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN13513_c0_g2_206_TPlot.pdf
TRINITY_DN13517_c0_g1:2858	si_a498	TRINITY_DN13517_c0_g1	2846	2867	2858	-33.50	-21.80	0.650746268656716	8.5	1-1,2867-2867;3-13,2865-2855;14-19,2853-2848	2-2,2866-2866[SIL];x-x,2854-2854[BULt];20-21,2847-2846[UP3]	..((((((.(((((((((((.(&).)))))))))))-))))))..	UUGGGGGGUGCGAAAAGCGAGG&UGUCGUUUUUCGU-CUUCCUUG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN13517_c0_g1_2858_TPlot.pdf
TRINITY_DN13517_c0_g1:6692	si_s509	TRINITY_DN13517_c0_g1	6681	6701	6692	-22.80	-15.10	0.662280701754386	9	3-5,6699-6697;7-18,6695-6684	1-2,6701-6700[UP5];6-6,6696-6696[SIL];19-21,6683-6681[UP3]	...((((((((((((.(((..&..))).))))))))))))...	AUGUAAGAAUAUAGGUUUGAA&AACAAUUCUAUAUUCUUAAUU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN13517_c0_g1_6692_TPlot.pdf
TRINITY_DN13517_c0_g2:1753	si_s83	TRINITY_DN13517_c0_g2	1742	1763	1753	-30.90	-20.90	0.676375404530744	5.5	1-7,1763-1757;8-13,1755-1750;15-20,1748-1743	x-x,1756-1756[BULt];14-14,1749-1749[SIL];21-21,1742-1742[UP3]	.((((((.((((((.(((((((&)))))))-)))))).)))))).	CGAGAAGCAGAAGGAGAAAGAA&UUCUUUC-CUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN13517_c0_g2_1753_TPlot.pdf
TRINITY_DN13517_c0_g2:1795	si_s70	TRINITY_DN13517_c0_g2	1784	1804	1795	-25.80	-18.30	0.709302325581395	8	3-16,1802-1789;18-21,1787-1784	1-2,1804-1803[UP5];17-17,1788-1788[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GGAACGGGAGAAGAUGGAAAG&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999814868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13517_c0_g2_1795_TPlot.pdf
TRINITY_DN13517_c0_g2:1797	si_s87	TRINITY_DN13517_c0_g2	1786	1807	1797	-32.90	-21.80	0.662613981762918	8.5	1-9,1807-1799;10-17,1797-1790	x-x,1798-1798[BULt];18-21,1789-1786[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AACGGGAGAAGAUGGAAAGGGA&UUCCUUUCU-UCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN13517_c0_g2_1797_TPlot.pdf
TRINITY_DN13517_c0_g2:1800	si_s80	TRINITY_DN13517_c0_g2	1790	1809	1800	-28.20	-22.50	0.797872340425532	6.5	1-11,1809-1799;14-21,1797-1790	12-13,1798-1798[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	GGAGAAGAU-GGAAAGGGAGA&UUUUUCUUUCCUUUCUUCUUC	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN13517_c0_g2_1800_TPlot.pdf
TRINITY_DN13517_c0_g2:1803	si_s82	TRINITY_DN13517_c0_g2	1791	1813	1803	-28.90	-22.00	0.761245674740484	7	1-9,1813-1805;10-14,1803-1799;15-21,1797-1791	x-x,1804-1804[BULt];x-x,1798-1798[BULt]	(((((((.(((((.(((((((((&)))))))))-)))))-)))))))	GAGAAGAUGGAAAGGGAGAGGGA&UUUCUUUCC-UUUCU-UCUUCUU	3	0.999999796088195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN13517_c0_g2_1803_TPlot.pdf
TRINITY_DN13531_c0_g1:841	si_a77	TRINITY_DN13531_c0_g1	830	850	841	-22.20	-16.80	0.756756756756757	5	1-8,850-843;10-21,841-830	9-9,842-842[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UUUUAGUAAUGGUAGACAAUU&AAUUGUUUUUCAUUAUUAAGA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN13531_c0_g1_841_TPlot.pdf
TRINITY_DN13531_c0_g2:440	si_a397	TRINITY_DN13531_c0_g2	428	449	440	-24.00	-15.70	0.654166666666667	8	1-7,449-443;10-14,440-436;15-21,434-428	8-9,442-441[SIL];x-x,435-435[BULt]	(((((((.(((((..(((((((&)))))))..)))))-)))))))	AAGCAAAUGCAGUCAUGUAUUC&GAAUAUAGAAUUGU-UUUGUUU	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN13531_c0_g2_440_TPlot.pdf
TRINITY_DN13533_c1_g1:2308	si_a188	TRINITY_DN13533_c1_g1	2297	2317	2308	-32.00	-21.10	0.659375	5	1-5,2317-2313;7-18,2311-2300	6-6,2312-2312[SIL];19-21,2299-2297[UP3]	...((((((((((((.(((((&))))).))))))))))))...	GUAUGAACAGGGAAAAAUAUU&AAUAUCUUUCCCUGUUCACUA	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN13533_c1_g1_2308_TPlot.pdf
TRINITY_DN13533_c1_g1:2423	si_a636	TRINITY_DN13533_c1_g1	2413	2432	2423	-26.30	-18.50	0.703422053231939	7	1-7,2432-2426;10-14,2423-2419;16-21,2418-2413	8-9,2425-2424[SIL];15-15,x-x[BULq]	((((((-(((((..(((((((&)))))))..))))).))))))	UAUUAC-CAGAAUUGUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN13533_c1_g1_2423_TPlot.pdf
TRINITY_DN13537_c0_g1:454	si_a569	TRINITY_DN13537_c0_g1	443	463	454	-34.20	-22.98	0.671929824561403	8.5	1-3,463-461;5-10,459-454;14-20,450-444	4-4,460-460[SIL];11-13,453-451[SIL];21-21,443-443[UP3]	.(((((((...((((((.(((&))).))))))...))))))).	GACAGACAAUGGAUUCAGGGG&CCCGUGAAUCGUAUGUUUGUA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN13537_c0_g1_454_TPlot.pdf
TRINITY_DN13542_c2_g1:421	si_s78	TRINITY_DN13542_c2_g1	410	430	421	-26.20	-17.30	0.66030534351145	9.5	1-15,430-416	16-21,415-410[UP3]	......(((((((((((((((&)))))))))))))))......	UGCUUUGAGGAGAGAGAAGAA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13542_c2_g1_421_TPlot.pdf
TRINITY_DN13542_c2_g1:423	si_s76	TRINITY_DN13542_c2_g1	412	432	423	-23.60	-18.20	0.771186440677966	8.5	2-17,431-416	1-1,432-432[UP5];18-21,415-412[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUUUGAGGAGAGAGAAGAAAA&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999981952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13542_c2_g1_423_TPlot.pdf
TRINITY_DN13542_c2_g1:424	si_s75	TRINITY_DN13542_c2_g1	413	433	424	-24.00	-18.20	0.758333333333333	9	3-18,431-416	1-2,433-432[UP5];19-21,415-413[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUGAGGAGAGAGAAGAAAAU&UAUUUUUUUUCUUUCCUUUCU	3	0.999999998855167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13542_c2_g1_424_TPlot.pdf
TRINITY_DN13542_c2_g1:425	si_s74	TRINITY_DN13542_c2_g1	414	434	425	-25.00	-18.20	0.728	10	4-19,431-416	1-3,434-432[UP5];20-21,415-414[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGAGGAGAGAGAAGAAAAUU&CUAUUUUUUUUCUUUCCUUUC	0	0.396977216196534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN13542_c2_g1_425_TPlot.pdf
TRINITY_DN13545_c0_g2:140	si_a403	TRINITY_DN13545_c0_g2	129	149	140	-22.00	-14.30	0.65	11.5	1-13,149-137	14-21,136-129[UP3]	........(((((((((((((&)))))))))))))........	UUAUCAACGCAAGGCGAUUCU&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN13545_c0_g2_140_TPlot.pdf
TRINITY_DN13545_c0_g2:373	si_a510	TRINITY_DN13545_c0_g2	362	382	373	-37.00	-25.70	0.694594594594595	7.5	1-11,382-372;13-15,370-368;18-21,365-362	12-12,371-371[SIL];16-17,367-366[SIL]	((((..(((.(((((((((((&))))))))))).)))..))))	CGCCGAGCAAUUCGGGGAAGA&UCUUCCUUGGAAUGUAAGGCG	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN13545_c0_g2_373_TPlot.pdf
TRINITY_DN13546_c1_g1:1598	si_a397	TRINITY_DN13546_c1_g1	1588	1607	1598	-24.00	-16.20	0.675	7.5	2-11,1606-1597;13-19,1596-1590	1-1,1607-1607[UP5];12-12,x-x[BULq];20-21,1589-1588[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	UUACAAAGC-AUUCUGUGUUA&GAAUAUAGAAUUGUUUUGUUU	2	0.993689766352297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN13546_c1_g1_1598_TPlot.pdf
TRINITY_DN13546_c1_g1:1599	si_a396	TRINITY_DN13546_c1_g1	1589	1608	1599	-24.70	-16.20	0.65587044534413	7.5	3-12,1606-1597;14-20,1596-1590	1-2,1608-1607[UP5];13-13,x-x[BULq];21-21,1589-1589[UP3]	.(((((((-((((((((((..&..)))))))))).))))))).	UACAAAGC-AUUCUGUGUUAG&AGAAUAUAGAAUUGUUUUGUU	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN13546_c1_g1_1599_TPlot.pdf
TRINITY_DN1354_c0_g1:1270	si_s74	TRINITY_DN1354_c0_g1	1259	1279	1270	-25.00	-17.70	0.708	7.5	2-17,1278-1263	1-1,1279-1279[UP5];18-21,1262-1259[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAUGGGAAGAAAAGAGAUAC&CUAUUUUUUUUCUUUCCUUUC	4	0.999999999999884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1354_c0_g1_1270_TPlot.pdf
TRINITY_DN13558_c0_g1:2242	si_a74	TRINITY_DN13558_c0_g1	2231	2251	2242	-22.20	-14.60	0.657657657657658	7.5	1-3,2251-2249;6-20,2246-2232	4-5,2248-2247[SIL];21-21,2231-2231[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	CAAUGAUGAAAAAUAGAGUGA&UCAAAUUGUUUUUCAUUAUUA	2	0.999999665452278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN13558_c0_g1_2242_TPlot.pdf
TRINITY_DN13558_c0_g1:2245	si_a546	TRINITY_DN13558_c0_g1	2235	2254	2245	-28.60	-19.00	0.664335664335664	4.5	1-6,2254-2249;8-14,2247-2241;16-21,2240-2235	7-7,2248-2248[SIL];15-15,x-x[BULq]	((((((-(((((((.((((((&)))))).))))))).))))))	GAUGAA-AAAUAGAGUGAGCC&GGUUCAAUCUAUUUCUUUAUC	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN13558_c0_g1_2245_TPlot.pdf
TRINITY_DN13558_c0_g1:2368	si_s81	TRINITY_DN13558_c0_g1	2358	2378	2368	-28.90	-20.00	0.69204152249135	7	1-8,2378-2371;9-15,2369-2363;17-20,2362-2359	x-x,2370-2370[BULt];16-16,x-x[BULq];21-21,2358-2358[UP3]	.((((-(((((((.((((((((&))))))))-))))))).)))).	UGAAG-AGAAGGGUAGAGGAAA&UUUUCUUU-CCUUUCUUCUUCU	2	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN13558_c0_g1_2368_TPlot.pdf
TRINITY_DN13558_c0_g1:2369	si_s80	TRINITY_DN13558_c0_g1	2359	2379	2369	-28.20	-20.50	0.726950354609929	6	1-9,2379-2371;10-16,2369-2363;18-21,2362-2359	x-x,2370-2370[BULt];17-17,x-x[BULq]	((((-(((((((.(((((((((&)))))))))-))))))).))))	GAAG-AGAAGGGUAGAGGAAAA&UUUUUCUUU-CCUUUCUUCUUC	2	0.99999999276185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN13558_c0_g1_2369_TPlot.pdf
TRINITY_DN1355_c0_g1:2549	si_s632	TRINITY_DN1355_c0_g1	2537	2561	2549	-38.20	-29.00	0.759162303664921	10	1-7,2561-2555;8-10,2551-2549;11-21,2547-2537	x-x,2554-2552[BULt];x-x,2548-2548[BULt]	(((((((((((.(((...(((((((&)))))))---)))-)))))))))))	GGGCGAACGCCUUACAGAGAAAGGG&UCUUUUC---GUA-GGCGUUUGCCC	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN1355_c0_g1_2549_TPlot.pdf
TRINITY_DN1355_c0_g1:3238	si_a705	TRINITY_DN1355_c0_g1	3227	3250	3238	-30.50	-20.10	0.659016393442623	11	1-7,3250-3244;8-14,3240-3234;17-21,3231-3227	x-x,3243-3241[BULt];15-16,3233-3232[SIL]	(((((..(((((((...(((((((&)))))))---)))))))..)))))	GAUUAGGUUGGGAUGACGUGCUAG&CUGGUAC---AUUCCAAAAUAAUC	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN1355_c0_g1_3238_TPlot.pdf
TRINITY_DN1355_c0_g1:585	si_a779	TRINITY_DN1355_c0_g1	574	597	585	-27.00	-17.90	0.662962962962963	13	4-9,594-589;10-21,585-574	1-3,597-595[UP5];x-x,588-586[BULt]	((((((((((((...((((((...&...))))))---))))))))))))	GGAGAAAUAGAACAUGGGUUGUCU&AUUCAACUC---UUCUAUUUUUCU	4	0.999999073922236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1355_c0_g1_585_TPlot.pdf
TRINITY_DN13567_c0_g1:2130	si_a454	TRINITY_DN13567_c0_g1	2119	2139	2130	-21.30	-14.80	0.694835680751174	10.5	3-11,2137-2129;13-20,2127-2120	1-2,2139-2138[UP5];12-12,2128-2128[SIL];21-21,2119-2119[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AGUUAUAUAAAGCGGCGAUGG&UAAUUGUUGUUAUAUAUAAUA	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN13567_c0_g1_2130_TPlot.pdf
TRINITY_DN13567_c0_g1:380	si_a573	TRINITY_DN13567_c0_g1	369	388	380	-28.70	-19.70	0.686411149825784	4.5	1-5,388-384;7-21,383-369	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	UUGUUACAGAUAUAU-AUUCA&UGAAUCGUAUGUUUGUAACAA	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN13567_c0_g1_380_TPlot.pdf
TRINITY_DN13567_c0_g1:425	si_a405	TRINITY_DN13567_c0_g1	412	434	425	-19.80	-13.80	0.696969696969697	11	1-12,434-423;13-18,420-415	x-x,422-421[BULt];19-21,414-412[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	GCCGAUGUAGAGACGAAACAGUU&AAUUGUUUUGUU--UAUAUUUAA	4	0.999999999999959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN13567_c0_g1_425_TPlot.pdf
TRINITY_DN13567_c0_g1:488	si_s173	TRINITY_DN13567_c0_g1	477	504	488	-39.70	-26.00	0.654911838790932	18.5	1-7,504-498;8-18,490-480	x-x,497-491[BULt];19-21,479-477[UP3]	...(((((((((((.......(((((((&)))))))-------)))))))))))...	GGUCUUGGGCAUCUUCGUACUUUACUCC&GGGGUAA-------AGAUGCCCGAGUAA	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN13567_c0_g1_488_TPlot.pdf
TRINITY_DN13567_c0_g1:721	si_a311	TRINITY_DN13567_c0_g1	710	730	721	-32.70	-22.40	0.685015290519878	7.5	1-6,730-725;9-21,722-710	7-8,724-723[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAUCAUGGAUAAAAGUAGGUG&CGCUUGGAUUUAUCCAUGAUU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN13567_c0_g1_721_TPlot.pdf
TRINITY_DN13576_c0_g3:336	si_s6	TRINITY_DN13576_c0_g3	326	345	336	-21.70	-16.10	0.741935483870968	4.5	2-12,344-334;14-20,333-327	1-1,345-345[UP5];13-13,x-x[BULq];21-21,326-326[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	GAUAGUAG-AAUAAGUGAUAA&AUAUUACUUAUUAUUACUAUA	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN13576_c0_g3_336_TPlot.pdf
TRINITY_DN13579_c0_g1:780	si_a817	TRINITY_DN13579_c0_g1	770	789	780	-30.90	-24.10	0.779935275080906	2.5	1-12,789-778;14-20,777-771	13-13,x-x[BULq];21-21,770-770[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	GUCUUUUC-UUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN13579_c0_g1_780_TPlot.pdf
TRINITY_DN13579_c0_g1:781	si_a816	TRINITY_DN13579_c0_g1	771	790	781	-32.30	-24.30	0.752321981424149	2.5	2-13,789-778;15-21,777-771	1-1,790-790[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UCUUUUC-UUCUUCUUCUUCU&CGAAGAAGAAGAAAGGAAAGA	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN13579_c0_g1_781_TPlot.pdf
TRINITY_DN13589_c0_g2:1082	si_a409	TRINITY_DN13589_c0_g2	1071	1091	1082	-19.50	-13.40	0.687179487179487	10	1-16,1091-1076	17-21,1075-1071[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAAUAUAAAUAUAGAUGAGGC&GUUUUGUUUAUAUUUAAAUAA	2	0.999991277418389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN13589_c0_g2_1082_TPlot.pdf
TRINITY_DN13589_c0_g2:1083	si_a408	TRINITY_DN13589_c0_g2	1072	1092	1083	-20.10	-14.40	0.716417910447761	9	1-17,1092-1076	18-21,1075-1072[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAUAUAAAUAUAGAUGAGGCA&UGUUUUGUUUAUAUUUAAAUA	2	0.997549565409419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN13589_c0_g2_1083_TPlot.pdf
TRINITY_DN13589_c0_g2:1084	si_a407	TRINITY_DN13589_c0_g2	1073	1093	1084	-19.80	-14.80	0.747474747474748	8.5	1-18,1093-1076	19-21,1075-1073[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUAUAAAUAUAGAUGAGGCAG&UUGUUUUGUUUAUAUUUAAAU	2	0.993767817732346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN13589_c0_g2_1084_TPlot.pdf
TRINITY_DN13589_c0_g2:1086	si_a405	TRINITY_DN13589_c0_g2	1075	1095	1086	-19.80	-14.80	0.747474747474748	10	3-20,1093-1076	1-2,1095-1094[UP5];21-21,1075-1075[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AUAAAUAUAGAUGAGGCAGCU&AAUUGUUUUGUUUAUAUUUAA	3	0.999993758972638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN13589_c0_g2_1086_TPlot.pdf
TRINITY_DN13589_c0_g2:1087	si_a404	TRINITY_DN13589_c0_g2	1076	1096	1087	-21.70	-14.60	0.672811059907834	10.5	4-21,1093-1076	1-3,1096-1094[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAAAUAUAGAUGAGGCAGCUA&GAAUUGUUUUGUUUAUAUUUA	2	0.999999997518168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN13589_c0_g2_1087_TPlot.pdf
TRINITY_DN13589_c0_g2:1091	si_a877	TRINITY_DN13589_c0_g2	1080	1100	1091	-27.00	-18.50	0.685185185185185	7	1-11,1100-1090;14-16,1088-1086;18-21,1083-1080	12-13,1089-1089[AILq];17-17,1085-1084[AILt]	((((..(((.-(((((((((((&)))))))))))..)))-.))))	UAUAGAUGAG-GCAGCUAGAUC&GAUUUAGUUGCAAUCA-AUAUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN13589_c0_g2_1091_TPlot.pdf
TRINITY_DN13589_c0_g2:1093	si_a875	TRINITY_DN13589_c0_g2	1083	1102	1093	-27.10	-17.70	0.653136531365314	10	3-13,1100-1090;16-18,1088-1086	1-2,1102-1101[UP5];14-15,1089-1089[AILq];19-21,1085-1083[UP3]	...(((.-(((((((((((..&..)))))))))))..)))...	AGAUGAG-GCAGCUAGAUCAC&AAGAUUUAGUUGCAAUCAAUA	2	0.983340638461441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN13589_c0_g2_1093_TPlot.pdf
TRINITY_DN13589_c0_g2:1094	si_a874	TRINITY_DN13589_c0_g2	1084	1103	1094	-26.70	-17.70	0.662921348314607	11	4-14,1100-1090;17-19,1088-1086	1-3,1103-1101[UP5];15-16,1089-1089[AILq];20-21,1085-1084[UP3]	..(((.-(((((((((((...&...)))))))))))..)))..	GAUGAG-GCAGCUAGAUCACU&AAAGAUUUAGUUGCAAUCAAU	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN13589_c0_g2_1094_TPlot.pdf
TRINITY_DN13589_c0_g2:1095	si_a873	TRINITY_DN13589_c0_g2	1085	1104	1095	-27.00	-17.70	0.655555555555556	12	5-15,1100-1090;18-20,1088-1086	1-4,1104-1101[UP5];16-17,1089-1089[AILq];21-21,1085-1085[UP3]	.(((.-(((((((((((....&....)))))))))))..))).	AUGAG-GCAGCUAGAUCACUC&UAAAGAUUUAGUUGCAAUCAA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN13589_c0_g2_1095_TPlot.pdf
TRINITY_DN13589_c0_g2:1099	si_a869	TRINITY_DN13589_c0_g2	1088	1111	1099	-24.80	-16.52	0.666129032258065	15.5	1-6,1111-1106;9-19,1100-1090	7-8,1105-1101[AILt];20-21,1089-1088[UP3]	..(((((((((((.....((((((&))))))---..)))))))))))..	AGGCAGCUAGAUCACUCGUGGUAA&UUAUUA---AAGAUUUAGUUGCAA	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN13589_c0_g2_1099_TPlot.pdf
TRINITY_DN13589_c0_g2:1100	si_a868	TRINITY_DN13589_c0_g2	1089	1112	1100	-24.80	-16.52	0.666129032258065	15	2-7,1111-1106;10-20,1100-1090	1-1,1112-1112[UP5];8-9,1105-1101[AILt];21-21,1089-1089[UP3]	.(((((((((((.....((((((.&.))))))---..))))))))))).	GGCAGCUAGAUCACUCGUGGUAAA&AUUAUUA---AAGAUUUAGUUGCA	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN13589_c0_g2_1100_TPlot.pdf
TRINITY_DN13589_c0_g2:1101	si_a867	TRINITY_DN13589_c0_g2	1090	1113	1101	-24.10	-16.12	0.668879668049792	16	3-8,1111-1106;11-21,1100-1090	1-2,1113-1112[UP5];9-10,1105-1101[AILt]	(((((((((((.....((((((..&..))))))---..)))))))))))	GCAGCUAGAUCACUCGUGGUAAAG&AAUUAUUA---AAGAUUUAGUUGC	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN13589_c0_g2_1101_TPlot.pdf
TRINITY_DN13589_c0_g2:1400	si_a142	TRINITY_DN13589_c0_g2	1389	1409	1400	-23.50	-16.40	0.697872340425532	4	1-6,1409-1404;8-17,1402-1393;20-21,1390-1389	7-7,1403-1403[SIL];18-19,1392-1391[SIL]	((..((((((((((.((((((&)))))).))))))))))..))	UUUUAACAACAACGUUUAAUU&AAUUAAUCGUUGUUGUUUUAA	4	0.999999807106365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN13589_c0_g2_1400_TPlot.pdf
TRINITY_DN13589_c0_g2:1404	si_a138	TRINITY_DN13589_c0_g2	1393	1413	1404	-26.30	-21.70	0.82509505703422	3	2-10,1412-1404;12-21,1402-1393	1-1,1413-1413[UP5];11-11,1403-1403[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AACAACAACGUUUAAUUACUU&UAGUAAUUAAUCGUUGUUGUU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN13589_c0_g2_1404_TPlot.pdf
TRINITY_DN13589_c0_g2:806	si_a224	TRINITY_DN13589_c0_g2	795	815	806	-27.40	-18.10	0.66058394160584	10	5-19,811-797	1-4,815-812[UP5];20-21,796-795[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGUUAUGGAAACAUGACAAG&AAACUCAUGUUUCUAUAAUCA	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN13589_c0_g2_806_TPlot.pdf
TRINITY_DN13589_c0_g2:808	si_a222	TRINITY_DN13589_c0_g2	797	817	808	-25.20	-18.10	0.718253968253968	12	7-21,811-797	1-6,817-812[UP5]	(((((((((((((((......&......)))))))))))))))	GUUAUGGAAACAUGACAAGAG&UUAAACUCAUGUUUCUAUAAU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN13589_c0_g2_808_TPlot.pdf
TRINITY_DN13589_c0_g2:809	si_a221	TRINITY_DN13589_c0_g2	798	818	809	-25.20	-16.70	0.662698412698413	13.5	8-21,811-798	1-7,818-812[UP5]	((((((((((((((.......&.......))))))))))))))	UUAUGGAAACAUGACAAGAGU&AUUAAACUCAUGUUUCUAUAA	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN13589_c0_g2_809_TPlot.pdf
TRINITY_DN1358_c0_g1:489	si_a314	TRINITY_DN1358_c0_g1	478	508	489	-27.10	-18.30	0.675276752767528	24	2-8,507-501;9-21,490-478	1-1,508-508[UP5];x-x,500-491[BULt]	(((((((((((((..........(((((((.&.)))))))----------)))))))))))))	AGGAAUCAUGGGUUGACAUGAUAAAGUCCAU&UUGGAUUU----------AUCCAUGAUUUUU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN1358_c0_g1_489_TPlot.pdf
TRINITY_DN13597_c0_g1:3104	si_s2	TRINITY_DN13597_c0_g1	3093	3113	3104	-20.50	-13.50	0.658536585365854	5.5	2-6,3112-3108;8-20,3106-3094	1-1,3113-3113[UP5];7-7,3107-3107[SIL];21-21,3093-3093[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	CUAGUAAUAAGUAAAAUAAGU&UUUUAUAUUACUUAUUAUUAC	2	0.999630479562854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN13597_c0_g1_3104_TPlot.pdf
TRINITY_DN13597_c0_g1:3105	si_s1	TRINITY_DN13597_c0_g1	3094	3114	3105	-18.70	-13.50	0.72192513368984	6.5	3-7,3112-3108;9-21,3106-3094	1-2,3114-3113[UP5];8-8,3107-3107[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	UAGUAAUAAGUAAAAUAAGUG&UUUUUAUAUUACUUAUUAUUA	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN13597_c0_g1_3105_TPlot.pdf
TRINITY_DN135_c0_g1:744	si_a409	TRINITY_DN135_c0_g1	733	757	744	-19.50	-14.00	0.717948717948718	10	1-9,757-749;10-21,744-733	x-x,748-745[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	UUAUUUAAAUAUUUAUGAAUAAAAC&GUUUUGUUU----AUAUUUAAAUAA	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN135_c0_g1_744_TPlot.pdf
TRINITY_DN13601_c0_g1:963	si_a784	TRINITY_DN13601_c0_g1	952	973	963	-24.70	-16.90	0.684210526315789	10.5	1-7,973-967;8-16,965-957	x-x,966-966[BULt];17-21,956-952[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	CCAGAGGAAGAGUAUGGAGAGU&ACUCUUC-UAUUUUUCUAUUUU	0	0.486443715463416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13601_c0_g1_963_TPlot.pdf
TRINITY_DN13608_c0_g1:503	si_s432	TRINITY_DN13608_c0_g1	492	512	503	-21.30	-14.60	0.685446009389671	7	1-14,512-499	15-21,498-492[UP3]	.......((((((((((((((&)))))))))))))).......	GUUAAAUUGUAAUUAUUGUUA&UAACAAUAAUUACAUAUUAUA	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN13608_c0_g1_503_TPlot.pdf
TRINITY_DN13608_c0_g1:505	si_s430	TRINITY_DN13608_c0_g1	494	514	505	-21.30	-17.00	0.7981220657277	5	1-16,514-499	17-21,498-494[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAAAUUGUAAUUAUUGUUAUA&UAUAACAAUAAUUACAUAUUA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN13608_c0_g1_505_TPlot.pdf
TRINITY_DN13608_c1_g1:361	si_a17	TRINITY_DN13608_c1_g1	350	370	361	-24.30	-15.80	0.650205761316872	9.5	3-17,368-354	1-2,370-369[UP5];18-21,353-350[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAUGAAGAAUAAGUAGGUUAA&AAAGCCUAUUUAUUUUUAGUU	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN13608_c1_g1_361_TPlot.pdf
TRINITY_DN1360_c0_g1:1080	si_s90	TRINITY_DN1360_c0_g1	1068	1089	1080	-35.30	-23.90	0.677053824362606	8	2-5,1088-1085;8-14,1082-1076;15-21,1074-1068	1-1,1089-1089[UP5];6-7,1084-1083[SIL];x-x,1075-1075[BULt]	(((((((.(((((((..((((.&.))))..)))))))-)))))))	CCGGAGUGGAAGAAGUUGAGAA&CUUUCUUCUUCUUC-GCUUCGG	3	0.999999999984651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1360_c0_g1_1080_TPlot.pdf
TRINITY_DN1360_c0_g1:1465	si_s810	TRINITY_DN1360_c0_g1	1454	1473	1465	-27.90	-18.30	0.655913978494624	8	1-7,1473-1467;9-15,1466-1460;18-20,1457-1455	8-8,x-x[BULq];16-17,1459-1458[SIL];21-21,1454-1454[UP3]	.(((..(((((((-(((((((&))))))).)))))))..))).	GGUUUUGGAAGGG-GACGAAG&CUUCGUUACCUUUUCUUAAUA	4	0.999999999800465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1360_c0_g1_1465_TPlot.pdf
TRINITY_DN1360_c0_g1:1576	si_s82	TRINITY_DN1360_c0_g1	1560	1585	1576	-28.90	-20.10	0.695501730103806	17	3-12,1583-1574;13-19,1568-1562	1-2,1585-1584[UP5];x-x,1573-1569[BULt];20-21,1561-1560[UP3]	..(((((((.....((((((((((..&..))))))))))-----)))))))..	UUGAAGAAGGCCGAGAAGGAGAGAUC&UUUCUUUCCUUU-----CUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1360_c0_g1_1576_TPlot.pdf
TRINITY_DN1360_c0_g1:1578	si_s80	TRINITY_DN1360_c0_g1	1562	1587	1578	-28.20	-19.70	0.698581560283688	13.5	5-14,1583-1574;15-21,1568-1562	1-4,1587-1584[UP5];x-x,1573-1569[BULt]	(((((((.....((((((((((....&....))))))))))-----)))))))	GAAGAAGGCCGAGAAGGAGAGAUCGA&UUUUUCUUUCCUUU-----CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1360_c0_g1_1578_TPlot.pdf
TRINITY_DN1360_c0_g1:865	si_a785	TRINITY_DN1360_c0_g1	855	877	865	-25.90	-17.50	0.675675675675676	9.5	1-7,877-871;8-17,867-858;20-21,856-855	x-x,870-868[BULt];18-19,857-857[AILq]	((.-((((((((((...(((((((&)))))))---))))))))))..))	GAU-GUAGAAAAAUGUAGGAAGAG&CUCUUCU---AUUUUUCUAUUUUC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1360_c0_g1_865_TPlot.pdf
TRINITY_DN1360_c0_g1:882	si_s69	TRINITY_DN1360_c0_g1	871	890	882	-23.40	-15.90	0.67948717948718	9.5	3-8,888-883;11-21,881-871	1-2,890-889[UP5];9-10,882-882[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	GGAAGAGGAAAU-UGGAAGAC&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1360_c0_g1_882_TPlot.pdf
TRINITY_DN1360_c0_g1:947	si_a70	TRINITY_DN1360_c0_g1	936	955	947	-23.90	-15.80	0.661087866108787	5.5	1-8,955-948;10-13,947-944;16-21,941-936	9-9,x-x[BULq];14-15,943-942[SIL]	((((((..((((-((((((((&)))))))).))))..))))))	AGUGAACUACAA-UUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	0	0.470529340445873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1360_c0_g1_947_TPlot.pdf
TRINITY_DN1360_c0_g1:948	si_a69	TRINITY_DN1360_c0_g1	937	956	948	-24.00	-15.70	0.654166666666667	5.5	1-9,956-948;11-14,947-944;17-21,941-937	10-10,x-x[BULq];15-16,943-942[SIL]	(((((..((((-(((((((((&))))))))).))))..)))))	GUGAACUACAA-UUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1360_c0_g1_948_TPlot.pdf
TRINITY_DN1361_c0_g2:273	si_a361	TRINITY_DN1361_c0_g2	262	282	273	-29.00	-19.50	0.672413793103448	6.5	3-13,280-270;15-19,268-264	1-2,282-281[UP5];14-14,269-269[SIL];20-21,263-262[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	UAUUGGUGCGAUCAAAAUAAG&UCUAUUUUGAUCGGAUCAAAA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN1361_c0_g2_273_TPlot.pdf
TRINITY_DN1361_c0_g2:5730	si_a885	TRINITY_DN1361_c0_g2	5719	5739	5730	-25.60	-19.20	0.75	6	1-6,5739-5734;9-21,5731-5719	7-8,5733-5732[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	AUUAUUACUGUGUAUAUUGCA&UGCAAUCAAUAUAGUAAUAAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN1361_c0_g2_5730_TPlot.pdf
TRINITY_DN13621_c0_g1:2917	si_s493	TRINITY_DN13621_c0_g1	2904	2926	2917	-19.80	-14.00	0.707070707070707	8	3-12,2924-2915;13-21,2912-2904	1-2,2926-2925[UP5];x-x,2914-2913[BULt]	(((((((((..((((((((((..&..))))))))))--)))))))))	UUGUUUUGUGCUUAUAUUUAGUU&AUUUAAAUAUAA--ACAAAACAA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN13621_c0_g1_2917_TPlot.pdf
TRINITY_DN13624_c0_g1:224	si_a799	TRINITY_DN13624_c0_g1	205	233	224	-32.50	-22.50	0.692307692307692	20	2-10,232-224;11-19,215-207	1-1,233-233[UP5];x-x,223-216[BULt];20-21,206-205[UP3]	..(((((((((........(((((((((.&.)))))))))--------)))))))))..	ACCGCUUCGGAACAGUUCCUUGGGAAAUC&UAUUUUCCAA--------UCCGAAGCGAA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN13624_c0_g1_224_TPlot.pdf
TRINITY_DN13625_c0_g1:3580	si_a715	TRINITY_DN13625_c0_g1	3570	3589	3580	-33.30	-24.90	0.747747747747748	3.5	1-14,3589-3576;16-21,3575-3570	15-15,x-x[BULq]	((((((-((((((((((((((&)))))))))))))).))))))	UCUGAG-GACGGUUAUUUUGG&CCAAAAUAAUCGUUACUCGGG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a715_TRINITY_DN13625_c0_g1_3580_TPlot.pdf
TRINITY_DN13625_c0_g1:3581	si_a714	TRINITY_DN13625_c0_g1	3571	3590	3581	-31.90	-23.80	0.746081504702194	4	2-15,3589-3576;17-21,3575-3571	1-1,3590-3590[UP5];16-16,x-x[BULq]	(((((-((((((((((((((.&.)))))))))))))).)))))	CUGAG-GACGGUUAUUUUGGG&UCCAAAAUAAUCGUUACUCGG	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a714_TRINITY_DN13625_c0_g1_3581_TPlot.pdf
TRINITY_DN13625_c0_g1:3582	si_a713	TRINITY_DN13625_c0_g1	3572	3591	3582	-29.60	-23.00	0.777027027027027	4	1-16,3591-3576;18-21,3575-3572	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	UGAG-GACGGUUAUUUUGGGA&UUCCAAAAUAAUCGUUACUCG	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a713_TRINITY_DN13625_c0_g1_3582_TPlot.pdf
TRINITY_DN13625_c0_g1:3583	si_a712	TRINITY_DN13625_c0_g1	3573	3592	3583	-28.20	-22.20	0.787234042553192	4	2-17,3591-3576;19-21,3575-3573	1-1,3592-3592[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	GAG-GACGGUUAUUUUGGGAA&AUUCCAAAAUAAUCGUUACUC	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN13625_c0_g1_3583_TPlot.pdf
TRINITY_DN13625_c0_g1:4121	si_s76	TRINITY_DN13625_c0_g1	4110	4130	4121	-23.60	-16.50	0.699152542372881	7.5	1-11,4130-4120;13-18,4118-4113	12-12,4119-4119[SIL];19-21,4112-4110[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AGUGAAGGAUGGAAAAAAAGU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13625_c0_g1_4121_TPlot.pdf
TRINITY_DN13625_c0_g1:4122	si_s75	TRINITY_DN13625_c0_g1	4111	4131	4122	-24.00	-17.30	0.720833333333333	6	1-12,4131-4120;14-19,4118-4113	13-13,4119-4119[SIL];20-21,4112-4111[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GUGAAGGAUGGAAAAAAAGUG&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999961149	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13625_c0_g1_4122_TPlot.pdf
TRINITY_DN13625_c0_g1:4123	si_s74	TRINITY_DN13625_c0_g1	4112	4132	4123	-25.00	-20.40	0.816	5	1-13,4132-4120;15-20,4118-4113	14-14,4119-4119[SIL];21-21,4112-4112[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UGAAGGAUGGAAAAAAAGUGG&CUAUUUUUUUUCUUUCCUUUC	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN13625_c0_g1_4123_TPlot.pdf
TRINITY_DN13625_c0_g1:4124	si_s73	TRINITY_DN13625_c0_g1	4113	4133	4124	-24.00	-21.80	0.908333333333333	4	1-14,4133-4120;16-21,4118-4113	15-15,4119-4119[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	GAAGGAUGGAAAAAAAGUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13625_c0_g1_4124_TPlot.pdf
TRINITY_DN13625_c0_g1:4125	si_s72	TRINITY_DN13625_c0_g1	4114	4134	4125	-24.10	-20.80	0.863070539419087	4.5	2-15,4133-4120;17-21,4118-4114	1-1,4134-4134[UP5];16-16,4119-4119[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AAGGAUGGAAAAAAAGUGGAC&UUCUAUUUUUUUUCUUUCCUU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13625_c0_g1_4125_TPlot.pdf
TRINITY_DN13625_c0_g1:4126	si_s71	TRINITY_DN13625_c0_g1	4115	4135	4126	-25.70	-19.90	0.77431906614786	6.5	3-16,4133-4120;18-21,4118-4115	1-2,4135-4134[UP5];17-17,4119-4119[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AGGAUGGAAAAAAAGUGGACU&CUUCUAUUUUUUUUCUUUCCU	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13625_c0_g1_4126_TPlot.pdf
TRINITY_DN13625_c0_g1:4127	si_s70	TRINITY_DN13625_c0_g1	4116	4136	4127	-25.80	-18.60	0.72093023255814	8.5	4-17,4133-4120;19-21,4118-4116	1-3,4136-4134[UP5];18-18,4119-4119[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GGAUGGAAAAAAAGUGGACUU&ACUUCUAUUUUUUUUCUUUCC	3	0.999999967686141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13625_c0_g1_4127_TPlot.pdf
TRINITY_DN13625_c0_g1:4330	si_a459	TRINITY_DN13625_c0_g1	4320	4339	4330	-23.20	-15.30	0.65948275862069	10	1-10,4339-4330;12-18,4329-4323	11-11,x-x[BULq];19-21,4322-4320[UP3]	...(((((((-((((((((((&)))))))))).)))))))...	CCUCAUAUUG-GUGUAGCGAC&GUUGUUAUAUAUAAUAUGUAA	2	0.993610737462659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN13625_c0_g1_4330_TPlot.pdf
TRINITY_DN13625_c0_g1:4331	si_a458	TRINITY_DN13625_c0_g1	4321	4340	4331	-23.80	-16.30	0.684873949579832	8.5	1-11,4340-4330;13-19,4329-4323	12-12,x-x[BULq];20-21,4322-4321[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	CUCAUAUUG-GUGUAGCGACA&UGUUGUUAUAUAUAAUAUGUA	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN13625_c0_g1_4331_TPlot.pdf
TRINITY_DN13625_c0_g1:4332	si_a457	TRINITY_DN13625_c0_g1	4322	4341	4332	-23.50	-17.20	0.731914893617021	6.5	1-12,4341-4330;14-20,4329-4323	13-13,x-x[BULq];21-21,4322-4322[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	UCAUAUUG-GUGUAGCGACAA&UUGUUGUUAUAUAUAAUAUGU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN13625_c0_g1_4332_TPlot.pdf
TRINITY_DN13625_c0_g1:4333	si_a456	TRINITY_DN13625_c0_g1	4323	4342	4333	-22.80	-17.00	0.745614035087719	6	2-13,4341-4330;15-21,4329-4323	1-1,4342-4342[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	CAUAUUG-GUGUAGCGACAAA&AUUGUUGUUAUAUAUAAUAUG	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN13625_c0_g1_4333_TPlot.pdf
TRINITY_DN13625_c0_g1:4334	si_a455	TRINITY_DN13625_c0_g1	4324	4343	4334	-21.10	-14.50	0.687203791469194	8	3-14,4341-4330;16-21,4329-4324	1-2,4343-4342[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	AUAUUG-GUGUAGCGACAAAA&AAUUGUUGUUAUAUAUAAUAU	2	0.999024445860172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN13625_c0_g1_4334_TPlot.pdf
TRINITY_DN13625_c1_g1:210	si_a391	TRINITY_DN13625_c1_g1	199	220	210	-22.80	-14.90	0.653508771929825	10.5	4-8,217-213;9-19,211-201	1-3,220-218[UP5];x-x,212-212[BULt];20-21,200-199[UP3]	..(((((((((((.(((((...&...)))))-)))))))))))..	AUCAGUUCUGUAUGUCUUACUC&AAUUAAGA-AUAUAGAAUUGUU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN13625_c1_g1_210_TPlot.pdf
TRINITY_DN13630_c0_g1:425	si_s289	TRINITY_DN13630_c0_g1	414	435	425	-36.40	-24.50	0.673076923076923	7	2-7,434-429;8-18,427-417;20-21,415-414	1-1,435-435[UP5];x-x,428-428[BULt];19-19,416-416[SIL]	((.(((((((((((.((((((.&.))))))-))))))))))).))	CGCUUUCGGUCGACUUGGGCGA&ACGCCUA-GUCGAUUGGAAUUG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s289_TRINITY_DN13630_c0_g1_425_TPlot.pdf
TRINITY_DN13632_c0_g2:842	si_a816	TRINITY_DN13632_c0_g2	830	851	842	-32.30	-21.10	0.653250773993808	4.5	2-13,850-839;14-19,837-832	1-1,851-851[UP5];x-x,838-838[BULt];20-21,831-830[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	UAUUUCUUCUUCUUCUUCUUCU&CGAAGAAGAAGAA-AGGAAAGA	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN13632_c0_g2_842_TPlot.pdf
TRINITY_DN1363_c0_g1:142	si_s91	TRINITY_DN1363_c0_g1	132	151	142	-34.70	-24.10	0.694524495677233	5	1-11,151-141;13-19,140-134	12-12,x-x[BULq];20-21,133-132[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	UAUGAAGCG-AGAAGAAGAAG&UUUCUUCUUCUUCGCUUCGGA	4	0.999999798976133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN1363_c0_g1_142_TPlot.pdf
TRINITY_DN13640_c0_g1:200	si_a639	TRINITY_DN13640_c0_g1	189	210	200	-23.60	-15.60	0.661016949152542	9	1-4,210-207;5-16,205-194	x-x,206-206[BULt];17-21,193-189[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	CAUUUUUACUCAAAGAGUAUCG&CGAU-UUUUUUGAGUAAUAUAU	2	0.999979154342175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN13640_c0_g1_200_TPlot.pdf
TRINITY_DN13646_c0_g1:1384	si_a823	TRINITY_DN13646_c0_g1	1373	1397	1384	-25.50	-16.70	0.654901960784314	11	1-8,1397-1390;9-19,1385-1375	x-x,1389-1386[BULt];20-21,1374-1373[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	CAUUUUUUCUUUUCAGACUUUCUUC&GAAGAAAG----GAAAGAAAAAAAA	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN13646_c0_g1_1384_TPlot.pdf
TRINITY_DN13646_c0_g1:145	si_a756	TRINITY_DN13646_c0_g1	127	154	145	-33.10	-21.70	0.655589123867069	20.5	2-11,153-144;12-20,136-128	1-1,154-154[UP5];x-x,143-137[BULt];21-21,127-127[UP3]	.(((((((((.......((((((((((.&.))))))))))-------))))))))).	CUCGAAGGCUUUGGCAGCGGAGGAGGUA&AACCUCCUUUG-------GGUUUUUGAU	3	0.999999999500795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN13646_c0_g1_145_TPlot.pdf
TRINITY_DN13646_c0_g1:873	si_a539	TRINITY_DN13646_c0_g1	862	882	873	-32.70	-22.00	0.672782874617737	6.5	1-7,882-876;9-13,874-870;15-20,868-863	8-8,875-875[SIL];14-14,869-869[SIL];21-21,862-862[UP3]	.((((((.(((((.(((((((&))))))).))))).)))))).	UAGUAGAAUGAAUGGAUUGCU&AGCGAUCGGUUCAAUCUAUUU	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN13646_c0_g1_873_TPlot.pdf
TRINITY_DN1364_c0_g1:1057	si_a150	TRINITY_DN1364_c0_g1	1046	1066	1057	-29.90	-19.50	0.652173913043478	10.5	1-11,1066-1056;13-17,1054-1050	12-12,1055-1055[SIL];18-21,1049-1046[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UAAGGACUUGGAAGCGACAGC&GUUGUUGUUUUAAGGUCAAUC	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN1364_c0_g1_1057_TPlot.pdf
TRINITY_DN1364_c0_g1:1059	si_a148	TRINITY_DN1364_c0_g1	1048	1068	1059	-30.30	-21.00	0.693069306930693	8	2-13,1067-1056;15-19,1054-1050	1-1,1068-1068[UP5];14-14,1055-1055[SIL];20-21,1049-1048[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AGGACUUGGAAGCGACAGCGC&UCGUUGUUGUUUUAAGGUCAA	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN1364_c0_g1_1059_TPlot.pdf
TRINITY_DN1364_c0_g1:981	si_a824	TRINITY_DN1364_c0_g1	970	990	981	-23.60	-15.40	0.652542372881356	8	1-5,990-986;7-15,984-976	6-6,985-985[SIL];16-21,975-970[UP3]	......(((((((((.(((((&))))).)))))))))......	CCUACAUUUCUUUCCAUUCUU&AAGAAAGGAAAGAAAAAAAAU	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN1364_c0_g1_981_TPlot.pdf
TRINITY_DN13650_c0_g1:3329	si_a222	TRINITY_DN13650_c0_g1	3318	3338	3329	-25.20	-16.90	0.670634920634921	10	4-8,3335-3331;11-21,3328-3318	1-3,3338-3336[UP5];9-10,3330-3329[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GUUGUAGAAACCAGAGUUCCG&UUAAACUCAUGUUUCUAUAAU	4	0.994930149310453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN13650_c0_g1_3329_TPlot.pdf
TRINITY_DN13651_c0_g1:2002	si_a404	TRINITY_DN13651_c0_g1	1990	2012	2002	-21.70	-15.80	0.728110599078341	7	1-5,2012-2008;6-10,2006-2002;11-20,2000-1991	x-x,2007-2007[BULt];x-x,2001-2001[BULt];21-21,1990-1990[UP3]	.((((((((((.(((((.(((((&)))))-)))))-)))))))))).	AGAAUAUAGACAAAGACAAAUUC&GAAUU-GUUUU-GUUUAUAUUUA	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN13651_c0_g1_2002_TPlot.pdf
TRINITY_DN13651_c0_g1:2816	si_s454	TRINITY_DN13651_c0_g1	2805	2825	2816	-25.50	-16.60	0.650980392156863	9.5	1-15,2825-2811	16-21,2810-2805[UP3]	......(((((((((((((((&)))))))))))))))......	UACCUUGGUGGUUGUUGUUGU&AUAACAACAAUUAUCUCAUAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN13651_c0_g1_2816_TPlot.pdf
TRINITY_DN13651_c0_g1:2817	si_s430	TRINITY_DN13651_c0_g1	2806	2826	2817	-21.30	-14.20	0.666666666666667	10.5	2-15,2825-2812	1-1,2826-2826[UP5];16-21,2811-2806[UP3]	......((((((((((((((.&.))))))))))))))......	ACCUUGGUGGUUGUUGUUGUU&UAUAACAAUAAUUACAUAUUA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN13651_c0_g1_2817_TPlot.pdf
TRINITY_DN13651_c0_g1:2820	si_s762	TRINITY_DN13651_c0_g1	2810	2829	2820	-26.30	-20.30	0.771863117870722	4.5	1-12,2829-2818;14-21,2817-2810	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	UGGUGGUU-GUUGUUGUUGUU&AACAACAACGAUUAAUUACUA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s762_TRINITY_DN13651_c0_g1_2820_TPlot.pdf
TRINITY_DN13651_c0_g1:2889	si_s818	TRINITY_DN13651_c0_g1	2878	2898	2889	-23.70	-18.10	0.763713080168776	9	1-17,2898-2882	18-21,2881-2878[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUUGUUGUUGUUGGGAAGAGG&CCUUUUCUUAAUAAUGAAAAA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN13651_c0_g1_2889_TPlot.pdf
TRINITY_DN13651_c1_g1:1728	si_a893	TRINITY_DN13651_c1_g1	1718	1737	1728	-21.70	-14.40	0.663594470046083	7.5	2-15,1736-1723;17-20,1722-1719	1-1,1737-1737[UP5];16-16,x-x[BULq];21-21,1718-1718[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AGUUG-UUGUUGUUGCUGUAA&AUAUAGUAAUAAUAAGUAAUA	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN13651_c1_g1_1728_TPlot.pdf
TRINITY_DN13651_c1_g1:1733	si_a124	TRINITY_DN13651_c1_g1	1722	1742	1733	-25.10	-17.30	0.689243027888446	8	3-21,1740-1722	1-2,1742-1741[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GUUGUUGUUGCUGUAAGAUCC&UUGUUUUAUAGCAAUAGUAAU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN13651_c1_g1_1733_TPlot.pdf
TRINITY_DN13652_c0_g1:1006	si_a566	TRINITY_DN13652_c0_g1	995	1017	1006	-36.40	-23.90	0.656593406593407	8.5	2-8,1016-1010;9-15,1007-1001;18-21,998-995	1-1,1017-1017[UP5];x-x,1009-1008[BULt];16-17,1000-999[SIL]	((((..(((((((..(((((((.&.)))))))--)))))))..))))	AGACUGACGAUUUGGACGGGGAA&CUCCCCGU--GAAUCGUAUGUUU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN13652_c0_g1_1006_TPlot.pdf
TRINITY_DN13652_c0_g2:1937	si_a567	TRINITY_DN13652_c0_g2	1926	1948	1937	-36.40	-24.10	0.662087912087912	8.5	1-7,1948-1942;8-14,1939-1933;17-20,1930-1927	x-x,1941-1940[BULt];15-16,1932-1931[SIL];21-21,1926-1926[UP3]	.((((..(((((((..(((((((&)))))))--)))))))..)))).	AAGACUGACGAUUUGGACGGGGA&UCCCCGU--GAAUCGUAUGUUUG	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a567_TRINITY_DN13652_c0_g2_1937_TPlot.pdf
TRINITY_DN13652_c0_g2:1938	si_a566	TRINITY_DN13652_c0_g2	1927	1949	1938	-36.40	-23.90	0.656593406593407	8.5	2-8,1948-1942;9-15,1939-1933;18-21,1930-1927	1-1,1949-1949[UP5];x-x,1941-1940[BULt];16-17,1932-1931[SIL]	((((..(((((((..(((((((.&.)))))))--)))))))..))))	AGACUGACGAUUUGGACGGGGAA&CUCCCCGU--GAAUCGUAUGUUU	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN13652_c0_g2_1938_TPlot.pdf
TRINITY_DN13654_c0_g1:2501	si_s806	TRINITY_DN13654_c0_g1	2490	2510	2501	-28.60	-19.00	0.664335664335664	9.5	3-8,2508-2503;10-10,2501-2501;13-21,2498-2490	1-2,2510-2509[UP5];9-9,2502-2502[SIL];11-12,2500-2499[SIL]	(((((((((..(.((((((..&..)))))).)..)))))))))	AAGAGAAGGCUAGGAAGAUUG&UUAUCUUCGUUACCUUUUCUU	2	0.999999893543778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN13654_c0_g1_2501_TPlot.pdf
TRINITY_DN13656_c0_g1:630	si_s285	TRINITY_DN13656_c0_g1	619	639	630	-35.50	-23.70	0.667605633802817	9	3-7,637-633;9-20,631-620	1-2,639-638[UP5];8-8,632-632[SIL];21-21,619-619[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	ACCAAUCGAUUGGCCGUGUAA&UAAUACGCCUAGUCGAUUGGA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s285_TRINITY_DN13656_c0_g1_630_TPlot.pdf
TRINITY_DN13657_c0_g2:51	si_a74	TRINITY_DN13657_c0_g2	40	60	51	-22.20	-18.20	0.81981981981982	8	1-2,60-59;5-20,56-41	3-4,58-57[SIL];21-21,40-40[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	AGAUGAUGAAGAACAGUAGGA&UCAAAUUGUUUUUCAUUAUUA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN13657_c0_g2_51_TPlot.pdf
TRINITY_DN1365_c0_g1:1954	si_s25	TRINITY_DN1365_c0_g1	1943	1963	1954	-27.10	-18.00	0.664206642066421	11	5-19,1959-1945	1-4,1963-1960[UP5];20-21,1944-1943[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCGAUUUAGUUGUAAUUUUUA&UAUUGAUUGCAACUAAAUCUU	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN1365_c0_g1_1954_TPlot.pdf
TRINITY_DN1365_c0_g1:1956	si_s23	TRINITY_DN1365_c0_g1	1945	1965	1956	-27.00	-17.70	0.655555555555556	13	7-21,1959-1945	1-6,1965-1960[UP5]	(((((((((((((((......&......)))))))))))))))	GAUUUAGUUGUAAUUUUUAGC&UAUAUUGAUUGCAACUAAAUC	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN1365_c0_g1_1956_TPlot.pdf
TRINITY_DN13660_c1_g1:2550	si_s504	TRINITY_DN13660_c1_g1	2539	2559	2550	-24.70	-17.80	0.720647773279352	4	1-9,2559-2551;11-19,2549-2541	10-10,2550-2550[SIL];20-21,2540-2539[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAAAUAUAGAAAUGUUUUGUU&AACAAAACAAUUCUAUAUUCU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN13660_c1_g1_2550_TPlot.pdf
TRINITY_DN13660_c1_g1:2555	si_s499	TRINITY_DN13660_c1_g1	2544	2564	2555	-22.60	-15.90	0.70353982300885	5	1-4,2564-2561;6-14,2559-2551;16-21,2549-2544	5-5,2560-2560[SIL];15-15,2550-2550[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	AUAGAAAUGUUUUGUUGGUGU&AUAUAAACAAAACAAUUCUAU	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN13660_c1_g1_2555_TPlot.pdf
TRINITY_DN13660_c3_g1:25	si_a323	TRINITY_DN13660_c3_g1	12	34	25	-26.80	-17.50	0.652985074626866	6.5	1-12,34-23;13-15,20-18;17-20,16-13	x-x,22-21[BULt];16-16,17-17[SIL];21-21,12-12[UP3]	.((((.(((..((((((((((((&))))))))))))--))).)))).	UAGGGCUAACUAAAAAUCAUGGA&UCCAUGAUUUUU--UUAUUCCUU	4	0.999999998797842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN13660_c3_g1_25_TPlot.pdf
TRINITY_DN13660_c3_g1:29	si_a319	TRINITY_DN13660_c3_g1	18	38	29	-22.40	-15.10	0.674107142857143	10	4-16,35-23	1-3,38-36[UP5];17-21,22-18[UP3]	.....(((((((((((((...&...))))))))))))).....	UAACUAAAAAUCAUGGAUUUA&UUUAUCCAUGAUUUUUUUAUU	2	0.999999950174905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN13660_c3_g1_29_TPlot.pdf
TRINITY_DN1366_c0_g1:1535	si_a405	TRINITY_DN1366_c0_g1	1524	1544	1535	-19.80	-13.30	0.671717171717172	6	1-10,1544-1535;12-21,1533-1524	11-11,1534-1534[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	UUAAGUGUAGUUAAAAUAAUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1366_c0_g1_1535_TPlot.pdf
TRINITY_DN13671_c0_g1:226	si_s95	TRINITY_DN13671_c0_g1	214	235	226	-36.30	-23.70	0.652892561983471	5	1-5,235-231;7-17,229-219;18-21,217-214	6-6,230-230[SIL];x-x,218-218[BULt]	((((.(((((((((((.(((((&))))).)))))))))))-))))	UCAAUUCCGGGGCGAAAAAGAA&UUCUUCUUCGCUUCGGA-UUGG	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN13671_c0_g1_226_TPlot.pdf
TRINITY_DN13675_c0_g1:5600	si_a350	TRINITY_DN13675_c0_g1	5589	5609	5600	-20.30	-13.30	0.655172413793103	10.5	5-16,5605-5594;18-21,5592-5589	1-4,5609-5606[UP5];17-17,5593-5593[SIL]	((((.((((((((((((....&....)))))))))))).))))	UCAACAUGGGAUUAGUACUUA&AAAAUAUUAAUUCUAUUUUGA	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN13675_c0_g1_5600_TPlot.pdf
TRINITY_DN13675_c2_g5:23	si_a784	TRINITY_DN13675_c2_g5	10	32	23	-24.70	-16.70	0.676113360323887	8	2-13,31-20;14-20,17-11	1-1,32-32[UP5];x-x,19-18[BULt];21-21,10-10[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	UAAGUAGGGUAAAGUAGGAGGGA&ACUCUUCUAUUUU--UCUAUUUU	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13675_c2_g5_23_TPlot.pdf
TRINITY_DN13676_c0_g1:1453	si_s320	TRINITY_DN13676_c0_g1	1442	1463	1453	-31.00	-21.00	0.67741935483871	8.5	1-9,1463-1455;11-14,1452-1449;16-20,1447-1443	10-10,1454-1453[AILt];15-15,1448-1448[SIL];21-21,1442-1442[UP3]	.(((((.((((..(((((((((&)))))))))-.)))).))))).	GGUGUUCGUGAAGAAGGAGGAC&GUCCUUCUU-GUUACAAACAUA	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN13676_c0_g1_1453_TPlot.pdf
TRINITY_DN13676_c0_g1:1455	si_s319	TRINITY_DN13676_c0_g1	1443	1464	1455	-31.30	-21.60	0.690095846645367	7	1-10,1464-1455;12-15,1452-1449;17-21,1447-1443	11-11,1454-1453[AILt];16-16,1448-1448[SIL]	(((((.((((..((((((((((&))))))))))-.)))).)))))	GUGUUCGUGAAGAAGGAGGACA&UGUCCUUCUU-GUUACAAACAU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN13676_c0_g1_1455_TPlot.pdf
TRINITY_DN13676_c0_g1:1477	si_a227	TRINITY_DN13676_c0_g1	1466	1486	1477	-26.80	-17.80	0.664179104477612	10.5	1-13,1486-1474;15-17,1472-1470	14-14,1473-1473[SIL];18-21,1469-1466[UP3]	....(((.(((((((((((((&))))))))))))).)))....	GUUCGGUGAUAGGGGCGUGGG&CUCAUGUUUCUAUAAUCAAUU	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN13676_c0_g1_1477_TPlot.pdf
TRINITY_DN13676_c0_g1:1478	si_a226	TRINITY_DN13676_c0_g1	1467	1487	1478	-27.60	-18.00	0.652173913043478	10.5	2-14,1486-1474;16-18,1472-1470	1-1,1487-1487[UP5];15-15,1473-1473[SIL];19-21,1469-1467[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	UUCGGUGAUAGGGGCGUGGGG&ACUCAUGUUUCUAUAAUCAAU	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN13676_c0_g1_1478_TPlot.pdf
TRINITY_DN13676_c0_g1:1479	si_a225	TRINITY_DN13676_c0_g1	1468	1488	1479	-27.50	-18.00	0.654545454545455	11.5	3-15,1486-1474;17-19,1472-1470	1-2,1488-1487[UP5];16-16,1473-1473[SIL];20-21,1469-1468[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UCGGUGAUAGGGGCGUGGGGA&AACUCAUGUUUCUAUAAUCAA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN13676_c0_g1_1479_TPlot.pdf
TRINITY_DN13676_c0_g1:1531	si_a537	TRINITY_DN13676_c0_g1	1520	1540	1531	-36.20	-23.90	0.660220994475138	6	1-13,1540-1528;16-19,1525-1522	14-15,1527-1526[SIL];20-21,1521-1520[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	AAAGAUGCAACUGAUCGUUCG&CGAGCGAUCGGUUCAAUCUAU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a537_TRINITY_DN13676_c0_g1_1531_TPlot.pdf
TRINITY_DN13676_c0_g1:1612	si_s80	TRINITY_DN13676_c0_g1	1601	1621	1612	-28.20	-19.10	0.677304964539007	7.5	1-8,1621-1614;10-12,1612-1610;15-21,1607-1601	9-9,1613-1613[SIL];13-14,1609-1608[SIL]	(((((((..(((.((((((((&)))))))).)))..)))))))	GAAGAGGUUGGGCAAGAAGGA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN13676_c0_g1_1612_TPlot.pdf
TRINITY_DN13676_c0_g1:1693	si_a494	TRINITY_DN13676_c0_g1	1682	1702	1693	-29.50	-19.60	0.664406779661017	12.5	6-21,1697-1682	1-5,1702-1698[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGGGUGAAGAACGGCGAGGA&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999997491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN13676_c0_g1_1693_TPlot.pdf
TRINITY_DN13676_c0_g1:396	si_a142	TRINITY_DN13676_c0_g1	385	405	396	-23.50	-15.90	0.676595744680851	12.5	3-4,403-402;7-19,399-387	1-2,405-404[UP5];5-6,401-400[SIL];20-21,386-385[UP3]	..(((((((((((((..((..&..))..)))))))))))))..	AAGGGACAACGGCGAGGAAAA&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999955784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN13676_c0_g1_396_TPlot.pdf
TRINITY_DN13676_c0_g1:410	si_s75	TRINITY_DN13676_c0_g1	395	419	410	-24.00	-15.80	0.658333333333333	9	1-13,419-407;14-18,402-398;20-21,396-395	x-x,406-403[BULt];19-19,397-397[SIL]	((.(((((....(((((((((((((&)))))))))))))----))))).))	GGCGAGGAAAACGAGAAGAAAAGUG&UAUUUUUUUUCUU----UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13676_c0_g1_410_TPlot.pdf
TRINITY_DN13676_c0_g1:442	si_s215	TRINITY_DN13676_c0_g1	432	458	442	-37.40	-24.60	0.657754010695187	17	1-6,458-453;7-17,445-435;19-21,434-432	x-x,452-446[BULt];18-18,x-x[BULq]	(((-(((((((((((.......((((((&))))))-------))))))))))).)))	UCA-GCGGUUUCGGAAAAACCCCACAGC&GUUGUG-------UUCGAAACCGCGUGA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN13676_c0_g1_442_TPlot.pdf
TRINITY_DN13679_c0_g2:5292	si_s74	TRINITY_DN13679_c0_g2	5279	5301	5292	-25.00	-18.10	0.724	9	1-4,5301-5298;6-13,5296-5289;14-21,5286-5279	5-5,5297-5297[SIL];x-x,5288-5287[BULt]	((((((((..((((((((.((((&)))).))))))))--))))))))	GAAGGGGAAAAGAGGAGACGUAG&CUAUUUUUUUUCU--UUCCUUUC	2	0.999997966586644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN13679_c0_g2_5292_TPlot.pdf
TRINITY_DN13679_c0_g2:5357	si_s797	TRINITY_DN13679_c0_g2	5346	5366	5357	-30.00	-19.84	0.661333333333333	7.5	1-11,5366-5356;17-21,5350-5346	12-16,5355-5351[SIL]	(((((.....(((((((((((&))))))))))).....)))))	UGACGUUCAGAAAGUACGAGC&GCUCGUAUUUUAUCUUCGUUA	2	0.999966129464633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN13679_c0_g2_5357_TPlot.pdf
TRINITY_DN13679_c0_g2:5358	si_s796	TRINITY_DN13679_c0_g2	5347	5367	5358	-30.30	-19.84	0.654785478547855	6.5	1-12,5367-5356;18-21,5350-5347	13-17,5355-5351[SIL]	((((.....((((((((((((&)))))))))))).....))))	GACGUUCAGAAAGUACGAGCU&AGCUCGUAUUUUAUCUUCGUU	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN13679_c0_g2_5358_TPlot.pdf
TRINITY_DN13679_c0_g2:5812	si_s802	TRINITY_DN13679_c0_g2	5801	5821	5812	-26.40	-18.90	0.715909090909091	8	4-9,5818-5813;11-21,5811-5801	1-3,5821-5819[UP5];10-10,5812-5812[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAAGGUGAUGACGAUAAAGAA&UAUUUUAUCUUCGUUACCUUU	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN13679_c0_g2_5812_TPlot.pdf
TRINITY_DN13679_c0_g2:6090	si_a17	TRINITY_DN13679_c0_g2	6079	6105	6090	-24.30	-17.80	0.732510288065844	19	3-9,6103-6097;10-21,6090-6079	1-2,6105-6104[UP5];x-x,6096-6091[BULt]	((((((((((((......(((((((..&..)))))))------))))))))))))	AACUAAGGAUGAUAAACUGUGGGCUGA&AAAGCCUAU------UUAUUUUUAGUU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN13679_c0_g2_6090_TPlot.pdf
TRINITY_DN13679_c0_g2:6299	si_s78	TRINITY_DN13679_c0_g2	6286	6308	6299	-26.20	-18.38	0.701526717557252	8	2-13,6307-6296;16-21,6291-6286	1-1,6308-6308[UP5];14-15,6295-6292[AILt]	((((((....((((((((((((.&.))))))))))))--..))))))	AGAAGAUACUGGGGAGAAAAAGU&UUUUUUUCUUUCC--UUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13679_c0_g2_6299_TPlot.pdf
TRINITY_DN13679_c0_g2:757	si_s633	TRINITY_DN13679_c0_g2	743	766	757	-37.90	-25.10	0.662269129287599	11.5	4-12,763-755;14-16,753-751;17-21,747-743	1-3,766-764[UP5];13-13,754-754[SIL];x-x,750-748[BULt]	(((((...(((.(((((((((...&...))))))))).)))---)))))	GGGGCUCCAGGGGCCUGCGAAUGU&CUUUUCGUAGGCGUUU---GCCCU	4	0.999871397437328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN13679_c0_g2_757_TPlot.pdf
TRINITY_DN13681_c1_g1:158	si_s480	TRINITY_DN13681_c1_g1	146	167	158	-25.00	-17.40	0.696	4.5	2-13,166-155;15-21,152-146	1-1,167-167[UP5];14-14,154-153[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	AUUUGAAAAAAAUAUGGGAUCA&GGAUCCUAUAUUU-AUUUAAAU	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN13681_c1_g1_158_TPlot.pdf
TRINITY_DN13681_c1_g1:38	si_a406	TRINITY_DN13681_c1_g1	27	47	38	-19.80	-13.20	0.666666666666667	9.5	1-15,47-33	16-21,32-27[UP3]	......(((((((((((((((&)))))))))))))))......	CAAUUUUGUAAAUAGAACAGU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN13681_c1_g1_38_TPlot.pdf
TRINITY_DN13681_c1_g2:1506	si_a71	TRINITY_DN13681_c1_g2	1495	1515	1506	-23.30	-17.40	0.746781115879828	7	1-8,1515-1508;10-17,1506-1499	9-9,1507-1507[SIL];18-21,1498-1495[UP3]	....((((((((.((((((((&)))))))).))))))))....	AUAGGAAAAACAUUUUGAAGG&CUUUCAAAUUGUUUUUCAUUA	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN13681_c1_g2_1506_TPlot.pdf
TRINITY_DN13681_c1_g2:1507	si_a70	TRINITY_DN13681_c1_g2	1496	1516	1507	-23.90	-19.00	0.794979079497908	6	1-9,1516-1508;11-18,1506-1499	10-10,1507-1507[SIL];19-21,1498-1496[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAGGAAAAACAUUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN13681_c1_g2_1507_TPlot.pdf
TRINITY_DN13681_c1_g2:1876	si_s110	TRINITY_DN13681_c1_g2	1865	1885	1876	-25.80	-17.80	0.689922480620155	3.5	1-21,1885-1865	NA	(((((((((((((((((((((&)))))))))))))))))))))	UUAUUUUUUUAUUUUUCAGUU&GAUUGGAAAAUAGAAAAAUAG	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s110_TRINITY_DN13681_c1_g2_1876_TPlot.pdf
TRINITY_DN13681_c1_g2:1877	si_s109	TRINITY_DN13681_c1_g2	1866	1886	1877	-26.50	-17.80	0.671698113207547	4	1-21,1886-1866	NA	(((((((((((((((((((((&)))))))))))))))))))))	UAUUUUUUUAUUUUUCAGUUU&GGAUUGGAAAAUAGAAAAAUA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN13681_c1_g2_1877_TPlot.pdf
TRINITY_DN13681_c1_g2:651	si_a777	TRINITY_DN13681_c1_g2	640	660	651	-27.00	-20.20	0.748148148148148	8.5	1-14,660-647	15-21,646-640[UP3]	.......((((((((((((((&)))))))))))))).......	UAAUGACGGAGGGUUGAAUCA&UGAUUCAACUCUUCUAUUUUU	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN13681_c1_g2_651_TPlot.pdf
TRINITY_DN13689_c0_g1:148	si_a322	TRINITY_DN13689_c0_g1	135	157	148	-27.00	-17.80	0.659259259259259	5.5	2-14,156-144;15-16,141-140;19-21,137-135	1-1,157-157[UP5];x-x,143-142[BULt];17-18,139-138[SIL]	(((..((..(((((((((((((.&.)))))))))))))--))..)))	AGGCUUAAAGAAAAAUCAUGGAA&AUCCAUGAUUUUUU--UAUUCCU	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN13689_c0_g1_148_TPlot.pdf
TRINITY_DN13689_c0_g1:150	si_a320	TRINITY_DN13689_c0_g1	139	159	150	-24.40	-16.70	0.684426229508197	9.5	4-17,156-143	1-3,159-157[UP5];18-21,142-139[UP3]	....((((((((((((((...&...))))))))))))))....	UUAAAGAAAAAUCAUGGAAAU&UUAUCCAUGAUUUUUUUAUUC	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN13689_c0_g1_150_TPlot.pdf
TRINITY_DN13689_c0_g1:152	si_a318	TRINITY_DN13689_c0_g1	141	161	152	-22.50	-16.70	0.742222222222222	11.5	6-19,156-143	1-5,161-157[UP5];20-21,142-141[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAGAAAAAUCAUGGAAAUAG&AUUUAUCCAUGAUUUUUUUAU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN13689_c0_g1_152_TPlot.pdf
TRINITY_DN13689_c0_g1:153	si_a317	TRINITY_DN13689_c0_g1	142	164	153	-24.30	-17.10	0.703703703703704	8.5	1-2,164-163;4-6,161-159;7-20,156-143	3-3,162-162[SIL];x-x,158-157[BULt];21-21,142-142[UP3]	.((((((((((((((..(((.((&)).)))--)))))))))))))).	AAGAAAAAUCAUGGAAAUAGUUC&GAUUUA--UCCAUGAUUUUUUUA	3	0.999923186256062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN13689_c0_g1_153_TPlot.pdf
TRINITY_DN13689_c0_g1:154	si_a316	TRINITY_DN13689_c0_g1	143	164	154	-26.30	-18.60	0.707224334600761	8.5	1-5,164-160;8-21,156-143	6-7,159-157[AILt]	((((((((((((((...(((((&)))))-..))))))))))))))	AGAAAAAUCAUGGAAAUAGUUC&GGAUU-UAUCCAUGAUUUUUUU	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN13689_c0_g1_154_TPlot.pdf
TRINITY_DN13689_c0_g1:157	si_a313	TRINITY_DN13689_c0_g1	146	167	157	-28.70	-20.30	0.707317073170732	9	1-8,167-160;11-21,156-146	9-10,159-157[AILt]	(((((((((((...((((((((&))))))))-..)))))))))))	AAAAUCAUGGAAAUAGUUCAGG&CUUGGAUU-UAUCCAUGAUUUU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN13689_c0_g1_157_TPlot.pdf
TRINITY_DN13689_c0_g1:592	si_s94	TRINITY_DN13689_c0_g1	581	601	592	-35.50	-24.40	0.687323943661972	5.5	1-10,601-592;13-20,589-582	11-12,591-590[SIL];21-21,581-581[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAAUCUGAAAAGAAGAAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN13689_c0_g1_592_TPlot.pdf
TRINITY_DN13689_c0_g1:593	si_s93	TRINITY_DN13689_c0_g1	582	602	593	-34.80	-24.10	0.692528735632184	4.5	2-11,601-592;14-21,589-582	1-1,602-602[UP5];12-13,591-590[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AAUCUGAAAAGAAGAAGAAGG&UCUUCUUCUUCGCUUCGGAUU	3	0.999997589863607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN13689_c0_g1_593_TPlot.pdf
TRINITY_DN13689_c0_g1:594	si_s92	TRINITY_DN13689_c0_g1	583	603	594	-34.90	-24.80	0.710601719197708	3.5	1-12,603-592;15-21,589-583	13-14,591-590[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AUCUGAAAAGAAGAAGAAGGA&UUCUUCUUCUUCGCUUCGGAU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN13689_c0_g1_594_TPlot.pdf
TRINITY_DN13689_c0_g1:595	si_s91	TRINITY_DN13689_c0_g1	584	604	595	-34.70	-24.30	0.70028818443804	3.5	1-13,604-592;16-21,589-584	14-15,591-590[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UCUGAAAAGAAGAAGAAGGAA&UUUCUUCUUCUUCGCUUCGGA	2	0.999661310754408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN13689_c0_g1_595_TPlot.pdf
TRINITY_DN13689_c0_g1:798	si_s78	TRINITY_DN13689_c0_g1	787	807	798	-26.20	-17.10	0.652671755725191	3	1-5,807-803;7-12,801-796;14-21,794-787	6-6,802-802[SIL];13-13,795-795[SIL]	((((((((.((((((.(((((&))))).)))))).))))))))	AGAAGAAAAGAAAGACAAAAA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13689_c0_g1_798_TPlot.pdf
TRINITY_DN13689_c0_g1:799	si_s77	TRINITY_DN13689_c0_g1	788	809	799	-25.50	-16.90	0.662745098039216	4	1-7,809-803;8-13,801-796;15-21,794-788	x-x,802-802[BULt];14-14,795-795[SIL]	(((((((.((((((.(((((((&)))))))-)))))).)))))))	GAAGAAAAGAAAGACAAAAAGA&UUUUUUU-UCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN13689_c0_g1_799_TPlot.pdf
TRINITY_DN13689_c0_g1:817	si_s79	TRINITY_DN13689_c0_g1	806	826	817	-26.20	-18.00	0.687022900763359	8.5	4-10,823-817;12-21,815-806	1-3,826-824[UP5];11-11,816-816[SIL]	((((((((((.(((((((...&...))))))).))))))))))	AAGAAGAAGGAGAAGAAACCC&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN13689_c0_g1_817_TPlot.pdf
TRINITY_DN13689_c0_g1:818	si_s78	TRINITY_DN13689_c0_g1	807	827	818	-26.20	-17.10	0.652671755725191	10.5	5-11,823-817;13-21,815-807	1-4,827-824[UP5];12-12,816-816[SIL]	(((((((((.(((((((....&....))))))).)))))))))	AGAAGAAGGAGAAGAAACCCA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13689_c0_g1_818_TPlot.pdf
TRINITY_DN13689_c0_g1:830	si_s83	TRINITY_DN13689_c0_g1	811	838	830	-30.90	-20.30	0.656957928802589	18.5	1-5,838-834;7-10,833-830;11-21,821-811	6-6,x-x[BULq];x-x,829-822[BULt]	(((((((((((........((((-(((((&))))).))))--------)))))))))))	GAAGGAGAAGAAACCCAAAAAGG-AAGAA&UUCUUUCCUU--------UCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN13689_c0_g1_830_TPlot.pdf
TRINITY_DN1368_c0_g1:2252	si_s693	TRINITY_DN1368_c0_g1	2241	2262	2252	-23.90	-16.00	0.669456066945607	11	1-4,2262-2259;6-17,2256-2245	5-5,2258-2257[AILt];18-21,2244-2241[UP3]	....((((((((((((..((((&))))-.))))))))))))....	AUUGAAAUCGGCUGGUGAAAAC&GUUU-AAUUAGUCGAUUUAUUA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN1368_c0_g1_2252_TPlot.pdf
TRINITY_DN1368_c0_g1:2253	si_s692	TRINITY_DN1368_c0_g1	2242	2263	2253	-24.20	-16.10	0.665289256198347	11	2-5,2262-2259;7-18,2256-2245	1-1,2263-2263[UP5];6-6,2258-2257[AILt];19-21,2244-2242[UP3]	...((((((((((((..((((.&.))))-.))))))))))))...	UUGAAAUCGGCUGGUGAAAACA&AGUUU-AAUUAGUCGAUUUAUU	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN1368_c0_g1_2253_TPlot.pdf
TRINITY_DN1368_c0_g1:2493	si_a175	TRINITY_DN1368_c0_g1	2482	2502	2493	-33.40	-23.78	0.711976047904192	7	1-10,2502-2493;14-19,2489-2484	11-13,2492-2490[SIL];20-21,2483-2482[UP3]	..((((((...((((((((((&))))))))))...))))))..	UCGAUAUUUAGUAGACGGGUG&CACCCGUCUAGAUAAUAUCUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN1368_c0_g1_2493_TPlot.pdf
TRINITY_DN1368_c0_g1:2495	si_a173	TRINITY_DN1368_c0_g1	2484	2504	2495	-33.80	-23.48	0.694674556213018	6	3-12,2502-2493;16-21,2489-2484	1-2,2504-2503[UP5];13-15,2492-2490[SIL]	((((((...((((((((((..&..))))))))))...))))))	GAUAUUUAGUAGACGGGUGCA&UUCACCCGUCUAGAUAAUAUC	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN1368_c0_g1_2495_TPlot.pdf
TRINITY_DN1368_c0_g1:549	si_a232	TRINITY_DN1368_c0_g1	538	558	549	-28.20	-19.80	0.702127659574468	5.5	1-10,558-549;12-16,547-543;18-21,541-538	11-11,548-548[SIL];17-17,542-542[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	GAUCAGAUUGUUUGUAGAAGC&GUUUCUAUAAUCAAUUCGAUC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN1368_c0_g1_549_TPlot.pdf
TRINITY_DN13691_c0_g2:532	si_a386	TRINITY_DN13691_c0_g2	521	542	532	-24.80	-16.30	0.657258064516129	6	1-7,542-536;8-18,534-524;20-21,522-521	x-x,535-535[BULt];19-19,523-523[SIL]	((.(((((((((((.(((((((&)))))))-))))))))))).))	UUGUGUGUUCUUAAUUUUGAGA&UUUCGAA-UUAAGAAUAUAGAA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN13691_c0_g2_532_TPlot.pdf
TRINITY_DN13691_c0_g2:534	si_a384	TRINITY_DN13691_c0_g2	523	544	534	-25.80	-17.10	0.662790697674419	6.5	1-9,544-536;10-20,534-524	x-x,535-535[BULt];21-21,523-523[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	GUGUGUUCUUAAUUUUGAGAUU&GAUUUCGAA-UUAAGAAUAUAG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a384_TRINITY_DN13691_c0_g2_534_TPlot.pdf
TRINITY_DN13702_c0_g1:887	si_s806	TRINITY_DN13702_c0_g1	876	897	887	-28.60	-19.20	0.671328671328671	6.5	1-8,897-890;9-11,888-886;13-21,884-876	x-x,889-889[BULt];12-12,885-885[SIL]	(((((((((.(((.((((((((&))))))))-))).)))))))))	AAGAAAAGGAGAUAGAAGAUAG&UUAUCUUC-GUUACCUUUUCUU	3	0.999999999660191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN13702_c0_g1_887_TPlot.pdf
TRINITY_DN13703_c1_g1:2352	si_a408	TRINITY_DN13703_c1_g1	2341	2365	2352	-20.10	-13.70	0.681592039800995	12	2-9,2364-2357;10-20,2352-2342	1-1,2365-2365[UP5];x-x,2356-2353[BULt];21-21,2341-2341[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	AAUUUAAAUAUGUUAAAACAAGACU&UGUUUUGUU----UAUAUUUAAAUA	4	0.999999999001661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN13703_c1_g1_2352_TPlot.pdf
TRINITY_DN13703_c2_g1:366	si_a785	TRINITY_DN13703_c2_g1	353	375	366	-25.90	-17.30	0.667953667953668	7	1-2,375-374;4-11,372-365;12-21,362-353	3-3,373-373[SIL];x-x,364-363[BULt]	((((((((((..((((((((.((&)).))))))))--))))))))))	GAAAAUAGAAUAGAAUAGAAUAG&CUCUUCUAUUU--UUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN13703_c2_g1_366_TPlot.pdf
TRINITY_DN1370_c0_g3:237	si_s298	TRINITY_DN1370_c0_g3	226	246	237	-30.80	-20.08	0.651948051948052	9	1-7,246-240;11-13,236-234;15-21,232-226	8-10,239-237[SIL];14-14,233-233[SIL]	(((((((.(((...(((((((&)))))))...))).)))))))	GAAUUUUGGCAUGACCAGUUG&CGAUUGGAAUUGCGAAAAUUC	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN1370_c0_g3_237_TPlot.pdf
TRINITY_DN1370_c0_g3:728	si_a144	TRINITY_DN1370_c0_g3	717	737	728	-27.40	-17.90	0.653284671532847	10	4-17,734-721;19-21,719-717	1-3,737-735[UP5];18-18,720-720[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	CCUAAGGACAAUGGCGAUCAU&UUAAUCGUUGUUGUUUUAAGG	4	0.999991392983814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN1370_c0_g3_728_TPlot.pdf
TRINITY_DN13712_c0_g1:540	si_a804	TRINITY_DN13712_c0_g1	528	552	540	-37.20	-26.80	0.720430107526882	7.5	1-5,552-548;6-14,544-536;15-21,534-528	x-x,547-545[BULt];x-x,535-535[BULt]	(((((((.(((((((((...(((((&)))))---)))))))))-)))))))	UUUUCUUACGCUUCGGAGACUUGGA&UCCAA---UCCGAAGCG-AAGAAGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN13712_c0_g1_540_TPlot.pdf
TRINITY_DN13719_c0_g1:756	si_s74	TRINITY_DN13719_c0_g1	745	767	756	-25.00	-16.80	0.672	9.5	1-9,767-759;10-18,756-748	x-x,758-757[BULt];19-21,747-745[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	CUCAGGAAGGAAUUAAAGAAUGG&CUAUUUUUU--UUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN13719_c0_g1_756_TPlot.pdf
TRINITY_DN13719_c0_g1:759	si_s73	TRINITY_DN13719_c0_g1	746	768	759	-24.00	-18.20	0.758333333333333	8.5	1-10,768-759;11-19,756-748	x-x,758-757[BULt];20-21,747-746[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	UCAGGAAGGAAUUAAAGAAUGGA&UCUAUUUUUU--UUCUUUCCUUU	2	0.999950182013822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13719_c0_g1_759_TPlot.pdf
TRINITY_DN13719_c0_g1:760	si_s72	TRINITY_DN13719_c0_g1	747	769	760	-24.10	-18.40	0.763485477178423	8.5	2-11,768-759;12-20,756-748	1-1,769-769[UP5];x-x,758-757[BULt];21-21,747-747[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	CAGGAAGGAAUUAAAGAAUGGAU&UUCUAUUUUUU--UUCUUUCCUU	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13719_c0_g1_760_TPlot.pdf
TRINITY_DN13719_c0_g1:761	si_s71	TRINITY_DN13719_c0_g1	748	770	761	-25.70	-18.40	0.715953307392996	9.5	3-12,768-759;13-21,756-748	1-2,770-769[UP5];x-x,758-757[BULt]	(((((((((..((((((((((..&..))))))))))--)))))))))	AGGAAGGAAUUAAAGAAUGGAUU&CUUCUAUUUUUU--UUCUUUCCU	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13719_c0_g1_761_TPlot.pdf
TRINITY_DN13719_c0_g1:762	si_s70	TRINITY_DN13719_c0_g1	749	771	762	-25.80	-17.20	0.666666666666667	9.5	4-13,768-759;14-21,756-749	1-3,771-769[UP5];x-x,758-757[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	GGAAGGAAUUAAAGAAUGGAUUA&ACUUCUAUUUUUU--UUCUUUCC	2	0.999999999999957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13719_c0_g1_762_TPlot.pdf
TRINITY_DN13725_c0_g2:198	si_a199	TRINITY_DN13725_c0_g2	188	208	198	-30.50	-20.30	0.665573770491803	6	1-7,208-202;8-16,200-192;18-20,191-189	x-x,201-201[BULt];17-17,x-x[BULq];21-21,188-188[UP3]	.(((-(((((((((.(((((((&)))))))-))))))))).))).	UGUC-AUUUGUUAGUUGAGCAG&CUGUUCA-CUAAUAAAUCGACU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a199_TRINITY_DN13725_c0_g2_198_TPlot.pdf
TRINITY_DN1372_c0_g1:1008	si_s9	TRINITY_DN1372_c0_g1	997	1017	1008	-22.90	-16.20	0.707423580786026	8	2-15,1016-1003;17-20,1001-998	1-1,1017-1017[UP5];16-16,1002-1002[SIL];21-21,997-997[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	GGAUGGAGUGGUAGUAGGUAG&UUACUUAUUAUUACUAUAUUG	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN1372_c0_g1_1008_TPlot.pdf
TRINITY_DN1372_c0_g1:1009	si_s8	TRINITY_DN1372_c0_g1	998	1018	1009	-21.30	-16.10	0.755868544600939	8.5	3-16,1016-1003;18-21,1001-998	1-2,1018-1017[UP5];17-17,1002-1002[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAUGGAGUGGUAGUAGGUAGA&AUUACUUAUUAUUACUAUAUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN1372_c0_g1_1009_TPlot.pdf
TRINITY_DN1372_c0_g1:1011	si_s6	TRINITY_DN1372_c0_g1	1000	1020	1011	-21.70	-15.00	0.691244239631336	13	5-18,1016-1003	1-4,1020-1017[UP5];19-21,1002-1000[UP3]	...((((((((((((((....&....))))))))))))))...	UGGAGUGGUAGUAGGUAGAGG&AUAUUACUUAUUAUUACUAUA	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN1372_c0_g1_1011_TPlot.pdf
TRINITY_DN1372_c0_g1:1015	si_s2	TRINITY_DN1372_c0_g1	1004	1024	1015	-20.50	-13.38	0.652682926829268	11.5	1-4,1024-1021;8-21,1017-1004	5-7,1020-1018[SIL]	((((((((((((((...((((&))))...))))))))))))))	GUGGUAGUAGGUAGAGGAGGA&UUUUAUAUUACUUAUUAUUAC	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN1372_c0_g1_1015_TPlot.pdf
TRINITY_DN1372_c0_g1:1115	si_s75	TRINITY_DN1372_c0_g1	1104	1124	1115	-24.00	-15.80	0.658333333333333	8	1-7,1124-1118;9-10,1116-1115;12-21,1113-1104	8-8,1117-1117[SIL];11-11,1114-1114[SIL]	((((((((((.((.(((((((&))))))).)).))))))))))	AGAAAGGAGAAGAUGAAGAUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g1_1115_TPlot.pdf
TRINITY_DN1372_c0_g1:1249	si_a327	TRINITY_DN1372_c0_g1	1238	1260	1249	-28.40	-18.88	0.664788732394366	11	1-3,1260-1258;6-15,1253-1244;18-21,1241-1238	4-5,1257-1254[AILt];16-17,1243-1242[SIL]	((((..((((((((((....(((&)))--..))))))))))..))))	GGACUUGGAGUAAAAAUAAUUCA&UGA--UUUUUUUAUUCCUUGUCC	2	0.999985103896774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1372_c0_g1_1249_TPlot.pdf
TRINITY_DN1372_c0_g1:1535	si_a570	TRINITY_DN1372_c0_g1	1524	1544	1535	-31.90	-21.00	0.658307210031348	8.5	1-7,1544-1538;10-17,1535-1528;19-19,1526-1526	8-9,1537-1536[SIL];18-18,1527-1527[SIL];20-21,1525-1524[UP3]	..(.((((((((..(((((((&)))))))..)))))))).)..	UAGGAGGCAUACCUUUCACGG&CCGUGAAUCGUAUGUUUGUAA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN1372_c0_g1_1535_TPlot.pdf
TRINITY_DN1372_c0_g1:1536	si_a569	TRINITY_DN1372_c0_g1	1525	1545	1536	-34.20	-23.60	0.690058479532164	7.5	1-8,1545-1538;11-18,1535-1528;20-20,1526-1526	9-10,1537-1536[SIL];19-19,1527-1527[SIL];21-21,1525-1525[UP3]	.(.((((((((..((((((((&))))))))..)))))))).).	AGGAGGCAUACCUUUCACGGG&CCCGUGAAUCGUAUGUUUGUA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN1372_c0_g1_1536_TPlot.pdf
TRINITY_DN1372_c0_g1:1571	si_s89	TRINITY_DN1372_c0_g1	1561	1581	1571	-35.30	-23.60	0.668555240793201	7.5	1-2,1581-1580;3-15,1578-1566;17-21,1565-1561	x-x,1579-1579[BULt];16-16,x-x[BULq]	(((((-(((((((((((((.((&))-))))))))))))).)))))	UGGGG-GAAGAGGAGGAGAUGG&CC-UUUCUUCUUCUUCGCUUCG	2	0.999999992297103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1372_c0_g1_1571_TPlot.pdf
TRINITY_DN1372_c0_g1:1572	si_s88	TRINITY_DN1372_c0_g1	1561	1582	1572	-34.80	-24.70	0.709770114942529	8	1-3,1582-1580;4-16,1578-1566;18-20,1564-1562	x-x,1579-1579[BULt];17-17,1565-1565[SIL];21-21,1561-1561[UP3]	.(((.(((((((((((((.(((&)))-))))))))))))).))).	UGGGGGAAGAGGAGGAGAUGGA&UCC-UUUCUUCUUCUUCGCUUC	3	0.999999158860227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1372_c0_g1_1572_TPlot.pdf
TRINITY_DN1372_c0_g1:1573	si_a553	TRINITY_DN1372_c0_g1	1561	1582	1573	-33.70	-23.60	0.700296735905044	9	1-11,1582-1572;13-15,1570-1568;16-19,1566-1563	12-12,1571-1571[SIL];x-x,1567-1567[BULt];20-21,1562-1561[UP3]	..((((.(((.(((((((((((&))))))))))).)))-))))..	UGGGGGAAGAGGAGGAGAUGGA&UCUAUUUCUUUAUCU-CCCCGU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN1372_c0_g1_1573_TPlot.pdf
TRINITY_DN1372_c0_g1:1574	si_a552	TRINITY_DN1372_c0_g1	1562	1583	1574	-33.10	-23.60	0.712990936555891	8	2-12,1582-1572;14-16,1570-1568;17-20,1566-1563	1-1,1583-1583[UP5];13-13,1571-1571[SIL];x-x,1567-1567[BULt];21-21,1562-1562[UP3]	.((((.(((.(((((((((((.&.))))))))))).)))-)))).	GGGGGAAGAGGAGGAGAUGGAC&AUCUAUUUCUUUAUCU-CCCCG	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN1372_c0_g1_1574_TPlot.pdf
TRINITY_DN1372_c0_g1:1575	si_a551	TRINITY_DN1372_c0_g1	1563	1584	1575	-31.60	-23.00	0.727848101265823	8.5	3-13,1582-1572;15-17,1570-1568;18-21,1566-1563	1-2,1584-1583[UP5];14-14,1571-1571[SIL];x-x,1567-1567[BULt]	((((.(((.(((((((((((..&..))))))))))).)))-))))	GGGGAAGAGGAGGAGAUGGACU&AAUCUAUUUCUUUAUCU-CCCC	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN1372_c0_g1_1575_TPlot.pdf
TRINITY_DN1372_c0_g1:1576	si_s70	TRINITY_DN1372_c0_g1	1564	1585	1576	-25.80	-17.60	0.682170542635659	11	4-14,1582-1572;15-21,1570-1564	1-3,1585-1583[UP5];x-x,1571-1571[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GGGAAGAGGAGGAGAUGGACUC&ACUUCUAUUUUUUU-UCUUUCC	2	0.999999999971538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1372_c0_g1_1576_TPlot.pdf
TRINITY_DN1372_c0_g1:1577	si_s83	TRINITY_DN1372_c0_g1	1566	1587	1577	-30.90	-21.00	0.679611650485437	13	6-8,1582-1580;9-21,1578-1566	1-5,1587-1583[UP5];x-x,1579-1579[BULt]	(((((((((((((.(((.....&.....)))-)))))))))))))	GAAGAGGAGGAGAUGGACUCAU&UUCUUUCC-UUUCUUCUUCUUC	2	0.999999999999829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1372_c0_g1_1577_TPlot.pdf
TRINITY_DN1372_c0_g1:1702	si_a497	TRINITY_DN1372_c0_g1	1691	1712	1702	-32.00	-21.30	0.665625	8	1-5,1712-1708;7-18,1705-1694	6-6,1707-1706[AILt];19-21,1693-1691[UP3]	...((((((((((((..(((((&)))))-.))))))))))))...	ACAGAAGACGAAGAAAAGACAU&AUGUC-GUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1372_c0_g1_1702_TPlot.pdf
TRINITY_DN1372_c0_g1:1703	si_a496	TRINITY_DN1372_c0_g1	1692	1713	1703	-32.40	-21.30	0.657407407407407	8	2-6,1712-1708;8-19,1705-1694	1-1,1713-1713[UP5];7-7,1707-1706[AILt];20-21,1693-1692[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	CAGAAGACGAAGAAAAGACAUU&UAUGUC-GUUUUUCGUCUUCCU	3	0.999999999999748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1372_c0_g1_1703_TPlot.pdf
TRINITY_DN1372_c0_g1:1704	si_a495	TRINITY_DN1372_c0_g1	1693	1714	1704	-31.90	-21.30	0.667711598746082	9	3-7,1712-1708;9-20,1705-1694	1-2,1714-1713[UP5];8-8,1707-1706[AILt];21-21,1693-1693[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	AGAAGACGAAGAAAAGACAUUG&AUAUGUC-GUUUUUCGUCUUCC	4	0.999999998491396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1372_c0_g1_1704_TPlot.pdf
TRINITY_DN1372_c0_g1:1705	si_a494	TRINITY_DN1372_c0_g1	1694	1715	1705	-29.50	-21.30	0.722033898305085	10	4-8,1712-1708;10-21,1705-1694	1-3,1715-1713[UP5];9-9,1707-1706[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	GAAGACGAAGAAAAGACAUUGA&AAUAUGUC-GUUUUUCGUCUUC	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1372_c0_g1_1705_TPlot.pdf
TRINITY_DN1372_c0_g1:1836	si_s810	TRINITY_DN1372_c0_g1	1825	1845	1836	-27.90	-18.20	0.652329749103943	10.5	1-4,1845-1842;6-6,1840-1840;9-17,1837-1829	5-5,1841-1841[SIL];7-8,1839-1838[SIL];18-21,1828-1825[UP3]	....(((((((((..(.((((&)))).)..)))))))))....	AGUAAAGAGAAGGGAAGGAAG&CUUCGUUACCUUUUCUUAAUA	3	0.999999999912465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1372_c0_g1_1836_TPlot.pdf
TRINITY_DN1372_c0_g1:1837	si_s809	TRINITY_DN1372_c0_g1	1826	1846	1837	-28.50	-19.60	0.687719298245614	9.5	1-5,1846-1842;7-7,1840-1840;10-18,1837-1829	6-6,1841-1841[SIL];8-9,1839-1838[SIL];19-21,1828-1826[UP3]	...(((((((((..(.(((((&))))).)..)))))))))...	GUAAAGAGAAGGGAAGGAAGA&UCUUCGUUACCUUUUCUUAAU	3	0.999995576199483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1372_c0_g1_1837_TPlot.pdf
TRINITY_DN1372_c0_g1:1840	si_s78	TRINITY_DN1372_c0_g1	1829	1849	1840	-26.20	-20.20	0.770992366412214	10	4-19,1846-1831	1-3,1849-1847[UP5];20-21,1830-1829[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAGAAGGGAAGGAAGACGG&UUUUUUUCUUUCCUUUCUUCU	3	0.999999992323359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1372_c0_g1_1840_TPlot.pdf
TRINITY_DN1372_c0_g1:1842	si_s76	TRINITY_DN1372_c0_g1	1831	1851	1842	-23.60	-20.00	0.847457627118644	12	6-21,1846-1831	1-5,1851-1847[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAAGGGAAGGAAGACGGGG&AUUUUUUUUCUUUCCUUUCUU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1372_c0_g1_1842_TPlot.pdf
TRINITY_DN1372_c0_g1:1843	si_s75	TRINITY_DN1372_c0_g1	1832	1853	1843	-24.00	-20.00	0.833333333333333	8.5	1-6,1853-1848;7-21,1846-1832	x-x,1847-1847[BULt]	(((((((((((((((.((((((&))))))-)))))))))))))))	AGAAGGGAAGGAAGACGGGGUA&UAUUUU-UUUUCUUUCCUUUCU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g1_1843_TPlot.pdf
TRINITY_DN1372_c0_g1:1844	si_s74	TRINITY_DN1372_c0_g1	1833	1854	1844	-25.00	-21.60	0.864	8	1-7,1854-1848;8-21,1846-1833	x-x,1847-1847[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	GAAGGGAAGGAAGACGGGGUAG&CUAUUUU-UUUUCUUUCCUUUC	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1372_c0_g1_1844_TPlot.pdf
TRINITY_DN1372_c0_g1:1845	si_s73	TRINITY_DN1372_c0_g1	1834	1855	1845	-24.00	-20.00	0.833333333333333	8	1-8,1855-1848;9-21,1846-1834	x-x,1847-1847[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	AAGGGAAGGAAGACGGGGUAGA&UCUAUUUU-UUUUCUUUCCUUU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1372_c0_g1_1845_TPlot.pdf
TRINITY_DN1372_c0_g1:1846	si_s72	TRINITY_DN1372_c0_g1	1835	1856	1846	-24.10	-19.50	0.809128630705394	8.5	1-9,1856-1848;10-21,1846-1835	x-x,1847-1847[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	AGGGAAGGAAGACGGGGUAGAG&UUCUAUUUU-UUUUCUUUCCUU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1372_c0_g1_1846_TPlot.pdf
TRINITY_DN1372_c0_g1:1850	si_s69	TRINITY_DN1372_c0_g1	1838	1859	1850	-23.40	-17.40	0.743589743589744	11	3-12,1857-1848;13-21,1846-1838	1-2,1859-1858[UP5];x-x,1847-1847[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GAAGGAAGACGGGGUAGAGGAG&AACUUCUAUUUU-UUUUCUUUC	3	0.999999993471148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1372_c0_g1_1850_TPlot.pdf
TRINITY_DN1372_c0_g1:1885	si_a319	TRINITY_DN1372_c0_g1	1873	1894	1885	-22.40	-15.10	0.674107142857143	9.5	1-7,1894-1888;9-10,1886-1885;11-21,1883-1873	8-8,1887-1887[SIL];x-x,1884-1884[BULt]	(((((((((((.((.(((((((&))))))).))-)))))))))))	AAUGAGAGAGUACGAGGAUGGA&UUUAUCCAUG-AUUUUUUUAUU	2	0.999999967769811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1372_c0_g1_1885_TPlot.pdf
TRINITY_DN1372_c0_g1:1886	si_a318	TRINITY_DN1372_c0_g1	1874	1895	1886	-22.50	-15.40	0.684444444444444	9	1-8,1895-1888;10-11,1886-1885;12-21,1883-1874	9-9,1887-1887[SIL];x-x,1884-1884[BULt]	((((((((((.((.((((((((&)))))))).))-))))))))))	AUGAGAGAGUACGAGGAUGGAU&AUUUAUCCAUG-AUUUUUUUAU	3	0.999999998855167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1372_c0_g1_1886_TPlot.pdf
TRINITY_DN1372_c0_g1:1924	si_s72	TRINITY_DN1372_c0_g1	1913	1933	1924	-24.10	-15.70	0.651452282157676	9.5	1-7,1933-1927;10-18,1924-1916	8-9,1926-1925[SIL];19-21,1915-1913[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	GCAGAAGGAGGAUUAAUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1372_c0_g1_1924_TPlot.pdf
TRINITY_DN1372_c0_g1:1927	si_s69	TRINITY_DN1372_c0_g1	1916	1936	1927	-23.40	-15.80	0.675213675213675	10.5	4-10,1933-1927;13-21,1924-1916	1-3,1936-1934[UP5];11-12,1926-1925[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GAAGGAGGAUUAAUAGAACGA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1372_c0_g1_1927_TPlot.pdf
TRINITY_DN1372_c0_g1:1977	si_s800	TRINITY_DN1372_c0_g1	1966	1986	1977	-29.70	-21.40	0.72053872053872	8.5	1-17,1986-1970	18-21,1969-1966[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAACGACGAAGGUGGGAUACG&CGUAUUUUAUCUUCGUUACCU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN1372_c0_g1_1977_TPlot.pdf
TRINITY_DN1372_c0_g1:1978	si_s799	TRINITY_DN1372_c0_g1	1967	1987	1978	-30.00	-21.40	0.713333333333333	8.5	2-18,1986-1970	1-1,1987-1987[UP5];19-21,1969-1967[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AACGACGAAGGUGGGAUACGU&UCGUAUUUUAUCUUCGUUACC	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN1372_c0_g1_1978_TPlot.pdf
TRINITY_DN1372_c0_g1:1979	si_s798	TRINITY_DN1372_c0_g1	1968	1988	1979	-29.30	-21.90	0.747440273037543	8.5	1-1,1988-1988;3-19,1986-1970	2-2,1987-1987[SIL];20-21,1969-1968[UP3]	..(((((((((((((((((.(&).)))))))))))))))))..	ACGACGAAGGUGGGAUACGUG&CUCGUAUUUUAUCUUCGUUAC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN1372_c0_g1_1979_TPlot.pdf
TRINITY_DN1372_c0_g1:1980	si_s797	TRINITY_DN1372_c0_g1	1969	1989	1980	-30.00	-22.10	0.736666666666667	8	2-2,1988-1988;4-20,1986-1970	1-1,1989-1989[UP5];3-3,1987-1987[SIL];21-21,1969-1969[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	CGACGAAGGUGGGAUACGUGA&GCUCGUAUUUUAUCUUCGUUA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN1372_c0_g1_1980_TPlot.pdf
TRINITY_DN1372_c0_g1:1981	si_s796	TRINITY_DN1372_c0_g1	1970	1990	1981	-30.30	-21.90	0.722772277227723	9	3-3,1988-1988;5-21,1986-1970	1-2,1990-1989[UP5];4-4,1987-1987[SIL]	(((((((((((((((((.(..&..).)))))))))))))))))	GACGAAGGUGGGAUACGUGAA&AGCUCGUAUUUUAUCUUCGUU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN1372_c0_g1_1981_TPlot.pdf
TRINITY_DN1372_c0_g1:1982	si_s795	TRINITY_DN1372_c0_g1	1971	1991	1982	-30.30	-20.70	0.683168316831683	10	4-4,1988-1988;6-21,1986-1971	1-3,1991-1989[UP5];5-5,1987-1987[SIL]	((((((((((((((((.(...&...).))))))))))))))))	ACGAAGGUGGGAUACGUGAAA&AAGCUCGUAUUUUAUCUUCGU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN1372_c0_g1_1982_TPlot.pdf
TRINITY_DN1372_c0_g1:2083	si_s82	TRINITY_DN1372_c0_g1	2071	2094	2083	-28.90	-20.90	0.72318339100346	8	1-5,2094-2090;6-11,2087-2082;12-21,2080-2071	x-x,2089-2088[BULt];x-x,2081-2081[BULt]	((((((((((.((((((..(((((&)))))--))))))-))))))))))	AAGAGGAGGACAAGGAAGCAGAGA&UUUCU--UUCCUU-UCUUCUUCUU	2	0.999999993027128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1372_c0_g1_2083_TPlot.pdf
TRINITY_DN1372_c0_g1:2084	si_s81	TRINITY_DN1372_c0_g1	2072	2095	2084	-28.90	-20.40	0.705882352941176	9	2-6,2094-2090;7-12,2087-2082;13-21,2080-2072	1-1,2095-2095[UP5];x-x,2089-2088[BULt];x-x,2081-2081[BULt]	(((((((((.((((((..(((((.&.)))))--))))))-)))))))))	AGAGGAGGACAAGGAAGCAGAGAU&UUUUCU--UUCCUU-UCUUCUUCU	2	0.999999999980649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1372_c0_g1_2084_TPlot.pdf
TRINITY_DN1372_c0_g1:2085	si_s80	TRINITY_DN1372_c0_g1	2073	2096	2085	-28.20	-19.10	0.677304964539007	10	3-7,2094-2090;8-13,2087-2082;14-21,2080-2073	1-2,2096-2095[UP5];x-x,2089-2088[BULt];x-x,2081-2081[BULt]	((((((((.((((((..(((((..&..)))))--))))))-))))))))	GAGGAGGACAAGGAAGCAGAGAUG&UUUUUCU--UUCCUU-UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1372_c0_g1_2085_TPlot.pdf
TRINITY_DN1372_c0_g1:2089	si_a327	TRINITY_DN1372_c0_g1	2078	2097	2089	-28.40	-19.30	0.679577464788732	10	1-1,2097-2097;3-8,2095-2090;12-21,2087-2078	2-2,2096-2096[SIL];9-11,2089-2088[AILq]	((((((((((..-((((((.(&).))))))...))))))))))	GGACAAGGAAGC-AGAGAUGA&UGAUUUUUUUAUUCCUUGUCC	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1372_c0_g1_2089_TPlot.pdf
TRINITY_DN1372_c0_g1:2102	si_a68	TRINITY_DN1372_c0_g1	2090	2112	2102	-25.40	-17.80	0.700787401574803	8.5	1-9,2112-2104;11-16,2101-2096;17-20,2094-2091	10-10,2103-2102[AILt];x-x,2095-2095[BULt];21-21,2090-2090[UP3]	.((((.((((((..(((((((((&)))))))))-.))))))-)))).	AGAGAUGACGAUGAUGAAGGAAG&CUUCUUUCA-AAUUGUU-UUUCA	3	0.999995836868361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1372_c0_g1_2102_TPlot.pdf
TRINITY_DN1372_c0_g1:503	si_s85	TRINITY_DN1372_c0_g1	483	512	503	-33.80	-22.40	0.662721893491124	23	1-10,512-503;11-20,493-484	x-x,502-494[BULt];21-21,483-483[UP3]	.((((((((((.........((((((((((&))))))))))---------)))))))))).	ACGGAGGAGGAGUUGUAAUUGAAAGGGAGG&CUUUCCUUUC---------UUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1372_c0_g1_503_TPlot.pdf
TRINITY_DN1372_c0_g1:506	si_s82	TRINITY_DN1372_c0_g1	487	515	506	-28.90	-19.30	0.667820069204152	13.5	2-13,514-503;14-21,494-487	1-1,515-515[UP5];x-x,502-495[BULt]	((((((((........((((((((((((.&.))))))))))))--------))))))))	AGGAGGAGUUGUAAUUGAAAGGGAGGGAC&UUUCUUUCCUUUC--------UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1372_c0_g1_506_TPlot.pdf
TRINITY_DN1372_c0_g1:556	si_s75	TRINITY_DN1372_c0_g1	545	565	556	-24.00	-19.10	0.795833333333333	7.5	1-16,565-550;18-21,548-545	17-17,549-549[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GGAACGGGGGGGAGAAGAGUA&UAUUUUUUUUCUUUCCUUUCU	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g1_556_TPlot.pdf
TRINITY_DN1372_c0_g1:557	si_s74	TRINITY_DN1372_c0_g1	546	566	557	-25.00	-20.50	0.82	6.5	1-17,566-550;19-21,548-546	18-18,549-549[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	GAACGGGGGGGAGAAGAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1372_c0_g1_557_TPlot.pdf
TRINITY_DN1372_c0_g1:558	si_a554	TRINITY_DN1372_c0_g1	547	569	558	-34.40	-23.20	0.674418604651163	10.5	1-5,569-565;6-10,562-558;12-20,556-548	x-x,564-563[BULt];11-11,557-557[SIL];21-21,547-547[UP3]	.(((((((((.(((((..(((((&)))))--))))).))))))))).	AACGGGGGGGAGAAGAGUAGUAG&CUAUU--UCUUUAUCUCCCCGUG	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN1372_c0_g1_558_TPlot.pdf
TRINITY_DN1372_c0_g1:560	si_a552	TRINITY_DN1372_c0_g1	549	574	560	-33.10	-22.20	0.670694864048338	16	1-7,574-568;8-12,562-558;14-21,556-549	x-x,567-563[BULt];13-13,557-557[SIL]	((((((((.(((((.....(((((((&)))))))-----))))).))))))))	CGGGGGGGAGAAGAGUAGUAGUGGGU&AUCUAUU-----UCUUUAUCUCCCCG	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN1372_c0_g1_560_TPlot.pdf
TRINITY_DN1372_c0_g1:561	si_s70	TRINITY_DN1372_c0_g1	550	570	561	-25.80	-21.20	0.821705426356589	6.5	1-3,570-568;5-21,566-550	4-4,567-567[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	GGGGGGGAGAAGAGUAGUAGU&ACUUCUAUUUUUUUUCUUUCC	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1372_c0_g1_561_TPlot.pdf
TRINITY_DN1372_c0_g1:562	si_s69	TRINITY_DN1372_c0_g1	551	571	562	-23.40	-18.10	0.773504273504274	7.5	2-4,570-568;6-21,566-551	1-1,571-571[UP5];5-5,567-567[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GGGGGGAGAAGAGUAGUAGUG&AACUUCUAUUUUUUUUCUUUC	2	0.998374943667631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1372_c0_g1_562_TPlot.pdf
TRINITY_DN1372_c0_g1:563	si_s68	TRINITY_DN1372_c0_g1	552	572	563	-23.10	-15.80	0.683982683982684	9.5	3-5,570-568;7-21,566-552	1-2,572-571[UP5];6-6,567-567[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GGGGGAGAAGAGUAGUAGUGG&CAACUUCUAUUUUUUUUCUUU	2	0.999999999570833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1372_c0_g1_563_TPlot.pdf
TRINITY_DN1372_c0_g1:577	si_s82	TRINITY_DN1372_c0_g1	553	586	577	-28.90	-19.60	0.678200692041523	30.5	1-10,586-577;11-21,563-553	x-x,576-564[BULt]	(((((((((((.............((((((((((&))))))))))-------------)))))))))))	GGGGAGAAGAGUAGUAGUGGGUCCAGGAGAGGAA&UUUCUUUCCU-------------UUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1372_c0_g1_577_TPlot.pdf
TRINITY_DN1372_c0_g1:578	si_s81	TRINITY_DN1372_c0_g1	554	587	578	-28.90	-19.50	0.674740484429066	30.5	1-11,587-577;12-21,563-554	x-x,576-564[BULt]	((((((((((.............(((((((((((&)))))))))))-------------))))))))))	GGGAGAAGAGUAGUAGUGGGUCCAGGAGAGGAAG&UUUUCUUUCCU-------------UUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1372_c0_g1_578_TPlot.pdf
TRINITY_DN1372_c0_g1:579	si_s80	TRINITY_DN1372_c0_g1	555	588	579	-28.20	-18.60	0.659574468085106	31	2-12,587-577;13-21,563-555	1-1,588-588[UP5];x-x,576-564[BULt]	(((((((((.............(((((((((((.&.)))))))))))-------------)))))))))	GGAGAAGAGUAGUAGUGGGUCCAGGAGAGGAAGG&UUUUUCUUUCCU-------------UUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1372_c0_g1_579_TPlot.pdf
TRINITY_DN1372_c0_g1:580	si_s84	TRINITY_DN1372_c0_g1	554	589	580	-32.30	-21.70	0.671826625386997	34.5	1-12,589-578;13-20,562-555	x-x,577-563[BULt];21-21,554-554[UP3]	.((((((((...............((((((((((((&))))))))))))---------------)))))))).	GGGAGAAGAGUAGUAGUGGGUCCAGGAGAGGAAGGA&UCUUUCCUUUCU---------------UCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1372_c0_g1_580_TPlot.pdf
TRINITY_DN1372_c0_g1:581	si_s83	TRINITY_DN1372_c0_g1	555	590	581	-30.90	-21.80	0.705501618122977	18	1-13,590-578;14-21,562-555	x-x,577-563[BULt]	((((((((...............(((((((((((((&)))))))))))))---------------))))))))	GGAGAAGAGUAGUAGUGGGUCCAGGAGAGGAAGGAA&UUCUUUCCUUUCU---------------UCUUCUUC	4	0.999999999999957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1372_c0_g1_581_TPlot.pdf
TRINITY_DN1372_c0_g1:585	si_s79	TRINITY_DN1372_c0_g1	574	594	585	-26.20	-17.90	0.683206106870229	12	5-18,590-577	1-4,594-591[UP5];19-21,576-574[UP3]	...((((((((((((((....&....))))))))))))))...	UCCAGGAGAGGAAGGAACCAU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1372_c0_g1_585_TPlot.pdf
TRINITY_DN1372_c0_g1:586	si_s78	TRINITY_DN1372_c0_g1	575	595	586	-26.20	-17.90	0.683206106870229	13	6-19,590-577	1-5,595-591[UP5];20-21,576-575[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCAGGAGAGGAAGGAACCAUA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1372_c0_g1_586_TPlot.pdf
TRINITY_DN1372_c0_g1:589	si_s75	TRINITY_DN1372_c0_g1	578	598	589	-24.00	-17.20	0.716666666666667	17	9-21,590-578	1-8,598-591[UP5]	(((((((((((((........&........)))))))))))))	GGAGAGGAAGGAACCAUAUAU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g1_589_TPlot.pdf
TRINITY_DN1372_c0_g1:622	si_s87	TRINITY_DN1372_c0_g1	607	633	622	-32.90	-21.50	0.653495440729483	13.5	1-4,633-630;5-10,627-622;11-21,617-607	x-x,629-628[BULt];x-x,621-618[BULt]	(((((((((((....((((((..((((&))))--))))))----)))))))))))	AAGCGGAGAGGUCACAAGAAAAUGGAA&UUCC--UUUCUU----CUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1372_c0_g1_622_TPlot.pdf
TRINITY_DN1372_c0_g1:623	si_s73	TRINITY_DN1372_c0_g1	608	632	623	-24.00	-16.30	0.679166666666667	14.5	1-11,632-622;12-18,617-611	x-x,621-618[BULt];19-21,610-608[UP3]	...(((((((....(((((((((((&)))))))))))----)))))))...	AGCGGAGAGGUCACAAGAAAAUGGA&UCUAUUUUUUU----UCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1372_c0_g1_623_TPlot.pdf
TRINITY_DN1372_c0_g1:624	si_s85	TRINITY_DN1372_c0_g1	609	635	624	-33.80	-23.50	0.695266272189349	13	1-6,635-630;7-12,627-622;13-21,617-609	x-x,629-628[BULt];x-x,621-618[BULt]	(((((((((....((((((..((((((&))))))--))))))----)))))))))	GCGGAGAGGUCACAAGAAAAUGGAAAG&CUUUCC--UUUCUU----CUUCUUCGC	2	0.999994215439769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1372_c0_g1_624_TPlot.pdf
TRINITY_DN1372_c0_g1:625	si_s71	TRINITY_DN1372_c0_g1	610	634	625	-25.70	-17.40	0.67704280155642	9	2-13,633-622;14-20,617-611	1-1,634-634[UP5];x-x,621-618[BULt];21-21,610-610[UP3]	.(((((((....((((((((((((.&.))))))))))))----))))))).	CGGAGAGGUCACAAGAAAAUGGAAA&CUUCUAUUUUUUU----UCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1372_c0_g1_625_TPlot.pdf
TRINITY_DN1372_c0_g1:626	si_s70	TRINITY_DN1372_c0_g1	611	635	626	-25.80	-17.10	0.662790697674419	10	3-14,633-622;15-21,617-611	1-2,635-634[UP5];x-x,621-618[BULt]	(((((((....((((((((((((..&..))))))))))))----)))))))	GGAGAGGUCACAAGAAAAUGGAAAG&ACUUCUAUUUUUUU----UCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1372_c0_g1_626_TPlot.pdf
TRINITY_DN1372_c0_g1:635	si_s76	TRINITY_DN1372_c0_g1	622	644	635	-23.60	-15.70	0.665254237288135	9	4-15,641-630;16-21,627-622	1-3,644-642[UP5];x-x,629-628[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	AAGAAAAUGGAAAGGGAAAACAU&AUUUUUUUUCUUUCC--UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1372_c0_g1_635_TPlot.pdf
TRINITY_DN1372_c0_g1:649	si_a460	TRINITY_DN1372_c0_g1	638	657	649	-21.60	-14.20	0.657407407407407	6	1-8,657-650;10-18,649-641	9-9,x-x[BULq];19-21,640-638[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AAAACAUAUUAU-UAUAACGA&UUGUUAUAUAUAAUAUGUAAU	3	0.999951779956384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN1372_c0_g1_649_TPlot.pdf
TRINITY_DN1372_c0_g1:650	si_a458	TRINITY_DN1372_c0_g1	640	659	650	-23.80	-15.80	0.663865546218487	6	2-10,658-650;12-20,649-641	1-1,659-659[UP5];11-11,x-x[BULq];21-21,640-640[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	AACAUAUUAU-UAUAACGAUG&UGUUGUUAUAUAUAAUAUGUA	2	0.97609923111979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN1372_c0_g1_650_TPlot.pdf
TRINITY_DN1372_c0_g1:651	si_a457	TRINITY_DN1372_c0_g1	641	660	651	-23.50	-16.50	0.702127659574468	5	1-11,660-650;13-21,649-641	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	ACAUAUUAU-UAUAACGAUGA&UUGUUGUUAUAUAUAAUAUGU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN1372_c0_g1_651_TPlot.pdf
TRINITY_DN1372_c0_g1:652	si_a456	TRINITY_DN1372_c0_g1	642	661	652	-22.80	-15.20	0.666666666666667	5	2-12,660-650;14-21,649-642	1-1,661-661[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	CAUAUUAU-UAUAACGAUGAA&AUUGUUGUUAUAUAUAAUAUG	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN1372_c0_g1_652_TPlot.pdf
TRINITY_DN1372_c0_g1:667	si_a70	TRINITY_DN1372_c0_g1	656	682	667	-23.90	-15.84	0.662761506276151	18.5	1-7,682-676;10-21,667-656	8-9,675-668[AILt]	((((((((((((........(((((((&)))))))------..))))))))))))	GAUGAAGGACAAGAAGGUAAUGGAAGA&UCUUUCA------AAUUGUUUUUCAUU	3	0.999999999986679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1372_c0_g1_667_TPlot.pdf
TRINITY_DN1372_c0_g1:669	si_a68	TRINITY_DN1372_c0_g1	658	684	669	-25.40	-16.84	0.662992125984252	18	1-9,684-676;12-21,667-658	10-11,675-668[AILt]	((((((((((........(((((((((&)))))))))------..))))))))))	UGAAGGACAAGAAGGUAAUGGAAGAAG&CUUCUUUCA------AAUUGUUUUUCA	2	0.999999956549988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1372_c0_g1_669_TPlot.pdf
TRINITY_DN1372_c0_g1:980	si_a788	TRINITY_DN1372_c0_g1	969	989	980	-24.80	-16.36	0.659677419354839	9	1-12,989-978;17-20,973-970	13-16,977-974[SIL];21-21,969-969[UP3]	.((((....((((((((((((&))))))))))))....)))).	GUGGAUCACAGAGAGGUGGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1372_c0_g1_980_TPlot.pdf
TRINITY_DN1372_c0_g1:988	si_s75	TRINITY_DN1372_c0_g1	978	997	988	-24.00	-15.90	0.6625	9.5	3-12,995-986;15-21,984-978	1-2,997-996[UP5];13-14,985-985[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	AGAGAGGU-GGAAAAGGAGGG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g1_988_TPlot.pdf
TRINITY_DN1372_c0_g2:501	si_s70	TRINITY_DN1372_c0_g2	490	510	501	-25.80	-17.90	0.693798449612403	6	1-7,510-504;9-17,502-494;19-20,492-491	8-8,503-503[SIL];18-18,493-493[SIL];21-21,490-490[UP3]	.((.(((((((((.(((((((&))))))).))))))))).)).	AGAUGGAAGAAGAUUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999999903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1372_c0_g2_501_TPlot.pdf
TRINITY_DN1372_c0_g2:502	si_s69	TRINITY_DN1372_c0_g2	491	511	502	-23.40	-18.20	0.777777777777778	6	2-8,510-504;10-18,502-494;20-21,492-491	1-1,511-511[UP5];9-9,503-503[SIL];19-19,493-493[SIL]	((.(((((((((.(((((((.&.))))))).))))))))).))	GAUGGAAGAAGAUUAGAAGUG&AACUUCUAUUUUUUUUCUUUC	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1372_c0_g2_502_TPlot.pdf
TRINITY_DN1372_c0_g2:503	si_s68	TRINITY_DN1372_c0_g2	492	512	503	-23.10	-16.40	0.70995670995671	9	3-9,510-504;11-19,502-494	1-2,512-511[UP5];10-10,503-503[SIL];20-21,493-492[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AUGGAAGAAGAUUAGAAGUGA&CAACUUCUAUUUUUUUUCUUU	4	0.999999996625536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1372_c0_g2_503_TPlot.pdf
TRINITY_DN1372_c0_g2:596	si_s76	TRINITY_DN1372_c0_g2	585	605	596	-23.60	-16.10	0.682203389830509	15	7-19,599-587	1-6,605-600[UP5];20-21,586-585[UP3]	..(((((((((((((......&......)))))))))))))..	UUGGGAGGAAAGGAAUAAUAG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1372_c0_g2_596_TPlot.pdf
TRINITY_DN1372_c0_g2:597	si_s75	TRINITY_DN1372_c0_g2	586	606	597	-24.00	-16.10	0.670833333333333	16	8-20,599-587	1-7,606-600[UP5];21-21,586-586[UP3]	.(((((((((((((.......&.......))))))))))))).	UGGGAGGAAAGGAAUAAUAGU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g2_597_TPlot.pdf
TRINITY_DN1372_c0_g2:742	si_s75	TRINITY_DN1372_c0_g2	730	751	742	-24.00	-17.20	0.716666666666667	9	3-16,749-736;18-21,733-730	1-2,751-750[UP5];17-17,735-734[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	AGAAUCGGAAGGAAGAGGAAAA&UAUUUUUUUUCUUUCC-UUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g2_742_TPlot.pdf
TRINITY_DN1372_c0_g2:743	si_s74	TRINITY_DN1372_c0_g2	731	752	743	-25.00	-17.10	0.684	7.5	1-2,752-751;4-17,749-736;19-21,733-731	3-3,750-750[SIL];18-18,735-734[AILt]	(((..((((((((((((((.((&)).))))))))))))))-.)))	GAAUCGGAAGGAAGAGGAAAAG&CUAUUUUUUUUCUUUCC-UUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1372_c0_g2_743_TPlot.pdf
TRINITY_DN1372_c0_g2:746	si_s71	TRINITY_DN1372_c0_g2	735	755	746	-25.70	-17.90	0.696498054474708	8.5	1-1,755-755;3-5,753-751;7-20,749-736	2-2,754-754[SIL];6-6,750-750[SIL];21-21,735-735[UP3]	.((((((((((((((.(((.(&).))).)))))))))))))).	CGGAAGGAAGAGGAAAAGACG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1372_c0_g2_746_TPlot.pdf
TRINITY_DN1372_c0_g2:747	si_a499	TRINITY_DN1372_c0_g2	736	757	747	-35.20	-24.00	0.681818181818182	8	1-9,757-749;10-10,747-747;12-19,745-738	x-x,748-748[BULt];11-11,746-746[SIL];20-21,737-736[UP3]	..((((((((.(.(((((((((&)))))))))-).))))))))..	GGAAGGAAGAGGAAAAGACGGC&GUCGUUUUU-CGUCUUCCUUGG	4	0.999999939286455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1372_c0_g2_747_TPlot.pdf
TRINITY_DN1372_c0_g2:749	si_a498	TRINITY_DN1372_c0_g2	737	758	749	-33.50	-24.20	0.722388059701493	8	2-10,757-749;11-11,747-747;13-20,745-738	1-1,758-758[UP5];x-x,748-748[BULt];12-12,746-746[SIL];21-21,737-737[UP3]	.((((((((.(.(((((((((.&.)))))))))-).)))))))).	GAAGGAAGAGGAAAAGACGGCU&UGUCGUUUUU-CGUCUUCCUUG	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1372_c0_g2_749_TPlot.pdf
TRINITY_DN1372_c0_g2:751	si_a496	TRINITY_DN1372_c0_g2	739	760	751	-32.40	-22.80	0.703703703703704	10	4-12,757-749;13-13,747-747;15-21,745-739	1-3,760-758[UP5];x-x,748-748[BULt];14-14,746-746[SIL]	(((((((.(.(((((((((...&...)))))))))-).)))))))	AGGAAGAGGAAAAGACGGCUCA&UAUGUCGUUUUU-CGUCUUCCU	2	0.997549565409419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1372_c0_g2_751_TPlot.pdf
TRINITY_DN1372_c0_g2:752	si_a495	TRINITY_DN1372_c0_g2	740	761	752	-31.90	-21.50	0.673981191222571	11	5-13,757-749;14-14,747-747;16-21,745-740	1-4,761-758[UP5];x-x,748-748[BULt];15-15,746-746[SIL]	((((((.(.(((((((((....&....)))))))))-).))))))	GGAAGAGGAAAAGACGGCUCAA&AUAUGUCGUUUUU-CGUCUUCC	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1372_c0_g2_752_TPlot.pdf
TRINITY_DN1372_c0_g2:776	si_s72	TRINITY_DN1372_c0_g2	765	794	776	-24.10	-15.70	0.651452282157676	24	1-6,794-789;7-19,779-767	x-x,788-780[BULt];20-21,766-765[UP3]	..(((((((((((((.........((((((&))))))---------)))))))))))))..	UUGGAAAGAAAAGGAUAUCCGUUGGUGGAA&UUCUAU---------UUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1372_c0_g2_776_TPlot.pdf
TRINITY_DN1372_c0_g2:824	si_s77	TRINITY_DN1372_c0_g2	812	833	824	-25.50	-17.20	0.674509803921569	8	1-14,833-820;16-19,817-814	15-15,819-818[AILt];20-21,813-812[UP3]	..((((..((((((((((((((&))))))))))))))-.))))..	AUAGAAUCGGAAGGAAGAGGAA&UUUUUUUUCUUUCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1372_c0_g2_824_TPlot.pdf
TRINITY_DN1372_c0_g2:825	si_s76	TRINITY_DN1372_c0_g2	813	834	825	-23.60	-17.20	0.728813559322034	8	2-15,833-820;17-20,817-814	1-1,834-834[UP5];16-16,819-818[AILt];21-21,813-813[UP3]	.((((..((((((((((((((.&.))))))))))))))-.)))).	UAGAAUCGGAAGGAAGAGGAAA&AUUUUUUUUCUUUCC-UUUCUU	2	0.99999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1372_c0_g2_825_TPlot.pdf
TRINITY_DN1372_c0_g2:826	si_s75	TRINITY_DN1372_c0_g2	814	835	826	-24.00	-17.20	0.716666666666667	9	3-16,833-820;18-21,817-814	1-2,835-834[UP5];17-17,819-818[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	AGAAUCGGAAGGAAGAGGAAAA&UAUUUUUUUUCUUUCC-UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1372_c0_g2_826_TPlot.pdf
TRINITY_DN1372_c0_g2:827	si_s74	TRINITY_DN1372_c0_g2	815	836	827	-25.00	-17.10	0.684	7.5	1-2,836-835;4-17,833-820;19-21,817-815	3-3,834-834[SIL];18-18,819-818[AILt]	(((..((((((((((((((.((&)).))))))))))))))-.)))	GAAUCGGAAGGAAGAGGAAAAG&CUAUUUUUUUUCUUUCC-UUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1372_c0_g2_827_TPlot.pdf
TRINITY_DN1372_c0_g2:831	si_a499	TRINITY_DN1372_c0_g2	820	841	831	-35.20	-24.00	0.681818181818182	8	1-9,841-833;10-10,831-831;12-19,829-822	x-x,832-832[BULt];11-11,830-830[SIL];20-21,821-820[UP3]	..((((((((.(.(((((((((&)))))))))-).))))))))..	GGAAGGAAGAGGAAAAGACGGC&GUCGUUUUU-CGUCUUCCUUGG	4	0.999999923809806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1372_c0_g2_831_TPlot.pdf
TRINITY_DN1372_c0_g2:833	si_a498	TRINITY_DN1372_c0_g2	821	842	833	-33.50	-24.20	0.722388059701493	8	2-10,841-833;11-11,831-831;13-20,829-822	1-1,842-842[UP5];x-x,832-832[BULt];12-12,830-830[SIL];21-21,821-821[UP3]	.((((((((.(.(((((((((.&.)))))))))-).)))))))).	GAAGGAAGAGGAAAAGACGGCU&UGUCGUUUUU-CGUCUUCCUUG	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1372_c0_g2_833_TPlot.pdf
TRINITY_DN1372_c0_g2:834	si_a497	TRINITY_DN1372_c0_g2	822	843	834	-32.00	-23.70	0.740625	8	3-11,841-833;12-12,831-831;14-21,829-822	1-2,843-842[UP5];x-x,832-832[BULt];13-13,830-830[SIL]	((((((((.(.(((((((((..&..)))))))))-).))))))))	AAGGAAGAGGAAAAGACGGCUC&AUGUCGUUUUU-CGUCUUCCUU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1372_c0_g2_834_TPlot.pdf
TRINITY_DN1372_c0_g2:835	si_a496	TRINITY_DN1372_c0_g2	823	844	835	-32.40	-22.80	0.703703703703704	10	4-12,841-833;13-13,831-831;15-21,829-823	1-3,844-842[UP5];x-x,832-832[BULt];14-14,830-830[SIL]	(((((((.(.(((((((((...&...)))))))))-).)))))))	AGGAAGAGGAAAAGACGGCUCA&UAUGUCGUUUUU-CGUCUUCCU	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1372_c0_g2_835_TPlot.pdf
TRINITY_DN1372_c0_g2:836	si_a495	TRINITY_DN1372_c0_g2	824	845	836	-31.90	-21.50	0.673981191222571	11	5-13,841-833;14-14,831-831;16-21,829-824	1-4,845-842[UP5];x-x,832-832[BULt];15-15,830-830[SIL]	((((((.(.(((((((((....&....)))))))))-).))))))	GGAAGAGGAAAAGACGGCUCAA&AUAUGUCGUUUUU-CGUCUUCC	3	0.999999928834596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1372_c0_g2_836_TPlot.pdf
TRINITY_DN1372_c0_g2:860	si_s72	TRINITY_DN1372_c0_g2	849	878	860	-24.10	-15.70	0.651452282157676	24	1-6,878-873;7-19,863-851	x-x,872-864[BULt];20-21,850-849[UP3]	..(((((((((((((.........((((((&))))))---------)))))))))))))..	UUGGAAAGAAAAGGAUAUCCGUUGGUGGAA&UUCUAU---------UUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1372_c0_g2_860_TPlot.pdf
TRINITY_DN13735_c0_g1:100	si_s654	TRINITY_DN13735_c0_g1	89	109	100	-38.60	-26.30	0.681347150259067	5.5	2-19,108-91	1-1,109-109[UP5];20-21,90-89[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACUGAUCUUCUGAUUGUAUCA&CGAUACAAUCGGGGGAUCGAA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s654_TRINITY_DN13735_c0_g1_100_TPlot.pdf
TRINITY_DN13735_c0_g1:101	si_s653	TRINITY_DN13735_c0_g1	90	110	101	-39.50	-26.30	0.665822784810127	6.5	3-20,108-91	1-2,110-109[UP5];21-21,90-90[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CUGAUCUUCUGAUUGUAUCAU&UCGAUACAAUCGGGGGAUCGA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s653_TRINITY_DN13735_c0_g1_101_TPlot.pdf
TRINITY_DN1373_c0_g1:275	si_s86	TRINITY_DN1373_c0_g1	264	286	275	-32.90	-24.00	0.729483282674772	8	1-8,286-279;9-15,276-270;17-21,268-264	x-x,278-277[BULt];16-16,269-269[SIL]	(((((.(((((((..((((((((&))))))))--))))))).)))))	GGCGAUGGAGAAGGCGAAGGGAA&UUUCCUUU--CUUCUUCUUCGCU	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1373_c0_g1_275_TPlot.pdf
TRINITY_DN1373_c0_g1:535	si_a749	TRINITY_DN1373_c0_g1	522	545	535	-42.10	-28.80	0.684085510688836	8.5	1-6,545-540;7-10,538-535;11-15,533-529;18-21,525-522	x-x,539-539[BULt];x-x,534-534[BULt];16-17,528-526[AILt]	((((...(((((.((((.((((((&))))))-))))-)))))-..))))	GCCCUGCAGGAGAGUUCGGUGGCC&GGCCAU-GAAC-CUCCU-UUGGGU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN1373_c0_g1_535_TPlot.pdf
TRINITY_DN1373_c0_g1:536	si_a748	TRINITY_DN1373_c0_g1	523	546	536	-42.00	-27.40	0.652380952380952	9	2-7,545-540;8-11,538-535;12-16,533-529;19-21,525-523	1-1,546-546[UP5];x-x,539-539[BULt];x-x,534-534[BULt];17-18,528-526[AILt]	(((...(((((.((((.((((((.&.))))))-))))-)))))-..)))	CCCUGCAGGAGAGUUCGGUGGCCC&UGGCCAU-GAAC-CUCCU-UUGGG	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a748_TRINITY_DN1373_c0_g1_536_TPlot.pdf
TRINITY_DN13746_c0_g1:2589	si_s896	TRINITY_DN13746_c0_g1	2578	2602	2589	-31.60	-20.68	0.654430379746835	13	1-5,2602-2598;7-17,2592-2582;19-20,2580-2579	6-6,2597-2593[AILt];18-18,2581-2581[SIL];21-21,2578-2578[UP3]	.((.(((((((((((.....(((((&)))))----.))))))))))).)).	AGAUAUUGAGGAGAAUAUGUGCCUA&UAGGC----UUUCUCUUCAAUUUCA	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN13746_c0_g1_2589_TPlot.pdf
TRINITY_DN13748_c0_g1:48	si_s488	TRINITY_DN13748_c0_g1	35	57	48	-18.30	-12.00	0.655737704918033	11.5	3-12,55-46;13-21,43-35	1-2,57-56[UP5];x-x,45-44[BULt]	(((((((((..((((((((((..&..))))))))))--)))))))))	UUGUUUGUAGAUUUGAGUGAGCA&UAUUUAUUUAAA--UAUAAACAA	4	0.999871397437328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN13748_c0_g1_48_TPlot.pdf
TRINITY_DN1374_c0_g1:1489	si_s681	TRINITY_DN1374_c0_g1	1478	1499	1489	-25.10	-17.60	0.701195219123506	7	1-6,1499-1494;7-16,1492-1483	x-x,1493-1493[BULt];17-21,1482-1478[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	CUCGAAAACUCAUGUCUUCUAU&AUAGAA-ACAUGAGUUUAAUUA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN1374_c0_g1_1489_TPlot.pdf
TRINITY_DN1374_c0_g1:1490	si_s680	TRINITY_DN1374_c0_g1	1479	1500	1490	-25.10	-18.90	0.752988047808765	6	1-7,1500-1494;8-17,1492-1483	x-x,1493-1493[BULt];18-21,1482-1479[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	UCGAAAACUCAUGUCUUCUAUA&UAUAGAA-ACAUGAGUUUAAUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN1374_c0_g1_1490_TPlot.pdf
TRINITY_DN1374_c0_g1:1495	si_s676	TRINITY_DN1374_c0_g1	1483	1504	1495	-27.40	-19.00	0.693430656934307	8	4-11,1501-1494;12-21,1492-1483	1-3,1504-1502[UP5];x-x,1493-1493[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	AAACUCAUGUCUUCUAUAGGAA&UGAUUAUAGAA-ACAUGAGUUU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s676_TRINITY_DN1374_c0_g1_1495_TPlot.pdf
TRINITY_DN13752_c0_g2:3216	si_a69	TRINITY_DN13752_c0_g2	3204	3225	3216	-24.00	-16.80	0.7	4	1-15,3225-3211;17-18,3209-3208;19-21,3206-3204	16-16,3210-3210[SIL];x-x,3207-3207[BULt]	(((.((.(((((((((((((((&))))))))))))))).))-)))	AUGUAAUGAUAAUUUGAGAGAA&UUCUUUCAAAUUGUUUUU-CAU	4	0.999997970858953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN13752_c0_g2_3216_TPlot.pdf
TRINITY_DN13756_c0_g1:62	si_a792	TRINITY_DN13756_c0_g1	51	71	62	-27.60	-18.20	0.659420289855072	6	1-15,71-57;18-19,54-53	16-17,56-55[SIL];20-21,52-51[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	GCGACGGGAAAAUAGGAGAAU&AUUUUUCUAUUUUCCAAUCCG	2	0.999804129748348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN13756_c0_g1_62_TPlot.pdf
TRINITY_DN13756_c0_g1:63	si_a791	TRINITY_DN13756_c0_g1	52	72	63	-26.50	-18.20	0.686792452830189	6	2-16,71-57;19-20,54-53	1-1,72-72[UP5];17-18,56-55[SIL];21-21,52-52[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	CGACGGGAAAAUAGGAGAAUC&UAUUUUUCUAUUUUCCAAUCC	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN13756_c0_g1_63_TPlot.pdf
TRINITY_DN13756_c0_g1:66	si_a788	TRINITY_DN13756_c0_g1	55	75	66	-24.80	-16.90	0.681451612903226	11	5-19,71-57	1-4,75-72[UP5];20-21,56-55[UP3]	..(((((((((((((((....&....)))))))))))))))..	CGGGAAAAUAGGAGAAUCCGG&UUCUAUUUUUCUAUUUUCCAA	3	0.999999999623995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN13756_c0_g1_66_TPlot.pdf
TRINITY_DN1375_c0_g1:1611	si_a498	TRINITY_DN1375_c0_g1	1600	1618	1611	-33.50	-22.30	0.665671641791045	8.5	1-6,1618-1613;9-19,1612-1602	7-8,x-x[BULq];20-21,1601-1600[UP3]	..(((((((((((--((((((&))))))..)))))))))))..	AUGGGAAGAUGGA--ACGACA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999998807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1375_c0_g1_1611_TPlot.pdf
TRINITY_DN1377_c0_g1:281	si_a791	TRINITY_DN1377_c0_g1	269	289	281	-26.50	-17.70	0.667924528301887	4	2-9,288-281;11-17,280-274;18-21,272-269	1-1,289-289[UP5];10-10,x-x[BULq];x-x,273-273[BULt]	((((.(((((((-((((((((.&.)))))))).)))))))-))))	GGAUGUGGAAAA-AGAAAAAUC&UAUUUUUCUAUUUUCCA-AUCC	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1377_c0_g1_281_TPlot.pdf
TRINITY_DN1378_c0_g1:1261	si_s801	TRINITY_DN1378_c0_g1	1250	1272	1261	-28.20	-18.70	0.663120567375887	9	1-3,1272-1270;4-14,1267-1257;16-20,1255-1251	x-x,1269-1268[BULt];15-15,1256-1256[SIL];21-21,1250-1250[UP3]	.(((((.(((((((((((..(((&)))--))))))))))).))))).	UGGGUAUUGAAGAUGGAAAUUAC&GUA--UUUUAUCUUCGUUACCUU	4	0.999999348004209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN1378_c0_g1_1261_TPlot.pdf
TRINITY_DN1378_c0_g1:1312	si_s68	TRINITY_DN1378_c0_g1	1301	1321	1312	-23.10	-16.10	0.696969696969697	10	4-18,1318-1304	1-3,1321-1319[UP5];19-21,1303-1301[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCUGGAAGAAAAUGGAAGAAC&CAACUUCUAUUUUUUUUCUUU	3	0.999999999993701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1378_c0_g1_1312_TPlot.pdf
TRINITY_DN1378_c0_g1:1826	si_s75	TRINITY_DN1378_c0_g1	1815	1837	1826	-24.00	-16.00	0.666666666666667	7.5	1-7,1837-1831;8-19,1828-1817	x-x,1830-1829[BULt];20-21,1816-1815[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	AUAAGGGAAAGAAAGCGAAAAUA&UAUUUUU--UUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1378_c0_g1_1826_TPlot.pdf
TRINITY_DN1378_c0_g1:1839	si_a485	TRINITY_DN1378_c0_g1	1827	1848	1839	-26.60	-17.30	0.650375939849624	5.5	1-7,1848-1842;9-14,1840-1835;16-21,1832-1827	8-8,1841-1841[SIL];15-15,1834-1833[AILt]	((((((..((((((.(((((((&))))))).))))))-.))))))	AAGCGAAAAUAUUCAAUAUGAC&GUUAUAUAGAAUAU-GUCGUUU	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN1378_c0_g1_1839_TPlot.pdf
TRINITY_DN13798_c0_g1:1288	si_s70	TRINITY_DN13798_c0_g1	1277	1297	1288	-25.80	-17.20	0.666666666666667	7.5	2-16,1296-1282	1-1,1297-1297[UP5];17-21,1281-1277[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACUUCGAGAAGAAAUAGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13798_c0_g1_1288_TPlot.pdf
TRINITY_DN137_c0_g1:1220	si_s73	TRINITY_DN137_c0_g1	1210	1229	1220	-24.00	-16.40	0.683333333333333	6.5	1-12,1229-1218;15-21,1216-1210	13-14,1217-1217[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	AAAGGGAU-GAAAAGAGUGGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN137_c0_g1_1220_TPlot.pdf
TRINITY_DN137_c0_g1:1223	si_a322	TRINITY_DN137_c0_g1	1212	1230	1223	-27.00	-19.10	0.707407407407407	7	1-6,1230-1225;9-21,1224-1212	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	AGGGAUGAAAAGA--GUGGAU&AUCCAUGAUUUUUUUAUUCCU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN137_c0_g1_1223_TPlot.pdf
TRINITY_DN137_c0_g1:1685	si_a68	TRINITY_DN137_c0_g1	1674	1694	1685	-25.40	-17.20	0.677165354330709	7.5	1-8,1694-1687;11-16,1684-1679;19-21,1676-1674	9-10,1686-1685[SIL];17-18,1678-1677[SIL]	(((..((((((..((((((((&))))))))..))))))..)))	UGACCGACAAUAGGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999525165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN137_c0_g1_1685_TPlot.pdf
TRINITY_DN137_c0_g1:487	si_a793	TRINITY_DN137_c0_g1	476	496	487	-28.50	-18.70	0.656140350877193	10	1-15,496-482;18-20,479-477	16-17,481-480[SIL];21-21,476-476[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	CUGGUAUGGGAGGUGGAGGAG&UUUUUCUAUUUUCCAAUCCGA	4	0.999997841227763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN137_c0_g1_487_TPlot.pdf
TRINITY_DN137_c0_g1:489	si_a791	TRINITY_DN137_c0_g1	478	498	489	-26.50	-17.60	0.664150943396226	11.5	3-17,496-482;20-21,479-478	1-2,498-497[UP5];18-19,481-480[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	GGUAUGGGAGGUGGAGGAGGU&UAUUUUUCUAUUUUCCAAUCC	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN137_c0_g1_489_TPlot.pdf
TRINITY_DN137_c0_g1:492	si_a788	TRINITY_DN137_c0_g1	481	502	492	-24.80	-18.50	0.745967741935484	10	1-9,502-494;10-20,492-482	x-x,493-493[BULt];21-21,481-481[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AUGGGAGGUGGAGGAGGUAGGG&UUCUAUUUU-UCUAUUUUCCAA	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN137_c0_g1_492_TPlot.pdf
TRINITY_DN137_c0_g1:493	si_a552	TRINITY_DN137_c0_g1	481	502	493	-33.10	-21.80	0.658610271903323	10.5	2-12,501-491;13-19,489-483	1-1,502-502[UP5];x-x,490-490[BULt];20-21,482-481[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	AUGGGAGGUGGAGGAGGUAGGG&AUCUAUUUCUUU-AUCUCCCCG	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN137_c0_g1_493_TPlot.pdf
TRINITY_DN137_c0_g1:494	si_a551	TRINITY_DN137_c0_g1	482	503	494	-31.60	-21.80	0.689873417721519	10	3-13,501-491;14-20,489-483	1-2,503-502[UP5];x-x,490-490[BULt];21-21,482-482[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UGGGAGGUGGAGGAGGUAGGGC&AAUCUAUUUCUUU-AUCUCCCC	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN137_c0_g1_494_TPlot.pdf
TRINITY_DN137_c0_g1:495	si_a550	TRINITY_DN137_c0_g1	483	504	495	-30.90	-21.80	0.705501618122977	11	4-14,501-491;15-21,489-483	1-3,504-502[UP5];x-x,490-490[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GGGAGGUGGAGGAGGUAGGGCU&CAAUCUAUUUCUUU-AUCUCCC	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN137_c0_g1_495_TPlot.pdf
TRINITY_DN137_c0_g1:553	si_a761	TRINITY_DN137_c0_g1	538	562	553	-30.10	-19.60	0.651162790697674	15.5	1-4,562-559;6-11,557-552;12-18,547-541	5-5,558-558[SIL];x-x,551-548[BULt];19-21,540-538[UP3]	...(((((((....((((((.((((&)))).))))))----)))))))...	UACCAGUCAACAAUAGACCCCGAGG&CCUUUGGGUUU----UUGAUUGAUU	2	0.999999818197989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN137_c0_g1_553_TPlot.pdf
TRINITY_DN137_c0_g1:554	si_a760	TRINITY_DN137_c0_g1	539	563	554	-31.10	-21.20	0.681672025723473	14.5	1-5,563-559;7-12,557-552;13-19,547-541	6-6,558-558[SIL];x-x,551-548[BULt];20-21,540-539[UP3]	..(((((((....((((((.(((((&))))).))))))----)))))))..	ACCAGUCAACAAUAGACCCCGAGGA&UCCUUUGGGUUU----UUGAUUGAU	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN137_c0_g1_554_TPlot.pdf
TRINITY_DN137_c0_g1:555	si_a759	TRINITY_DN137_c0_g1	540	564	555	-32.60	-21.40	0.656441717791411	10.5	2-6,563-559;8-13,557-552;14-20,547-541	1-1,564-564[UP5];7-7,558-558[SIL];x-x,551-548[BULt];21-21,540-540[UP3]	.(((((((....((((((.(((((.&.))))).))))))----))))))).	CCAGUCAACAAUAGACCCCGAGGAA&CUCCUUUGGGUUU----UUGAUUGA	4	0.99999997791958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN137_c0_g1_555_TPlot.pdf
TRINITY_DN137_c0_g1:771	si_s792	TRINITY_DN137_c0_g1	758	780	771	-28.50	-19.00	0.666666666666667	9.5	3-4,778-777;6-15,775-766;16-21,763-758	1-2,780-779[UP5];5-5,776-776[SIL];x-x,765-764[BULt]	((((((..((((((((((.((..&..)).))))))))))--))))))	GAGGUACAAGAUGCGAGCCUGGC&AACAAGCUCGUAUUU--UAUCUU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN137_c0_g1_771_TPlot.pdf
TRINITY_DN13808_c0_g1:2390	si_s85	TRINITY_DN13808_c0_g1	2379	2400	2390	-33.80	-22.60	0.668639053254438	9	1-7,2400-2394;10-19,2390-2381	8-9,2393-2391[AILt];20-21,2380-2379[UP3]	..((((((((((...(((((((&)))))))-..))))))))))..	AGGAAGAAGAAGUACAGGAAGG&CUUUCCU-UUCUUCUUCUUCGC	2	0.999999999138367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN13808_c0_g1_2390_TPlot.pdf
TRINITY_DN13808_c0_g1:2392	si_s83	TRINITY_DN13808_c0_g1	2381	2402	2392	-30.90	-22.00	0.711974110032362	10	3-9,2400-2394;12-21,2390-2381	1-2,2402-2401[UP5];10-11,2393-2391[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	GAAGAAGAAGUACAGGAAGGCC&UUCUUUCCU-UUCUUCUUCUUC	3	0.999999999997568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN13808_c0_g1_2392_TPlot.pdf
TRINITY_DN13808_c0_g1:2407	si_s73	TRINITY_DN13808_c0_g1	2392	2416	2407	-24.00	-17.00	0.708333333333333	13.5	1-12,2416-2405;13-19,2400-2394	x-x,2404-2401[BULt];20-21,2393-2392[UP3]	..(((((((....((((((((((((&))))))))))))----)))))))..	ACAGGAAGGCCACGAAAAAGAUGGA&UCUAUUUUUUUU----CUUUCCUUU	2	0.999999999929391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13808_c0_g1_2407_TPlot.pdf
TRINITY_DN13809_c0_g1:1027	si_s802	TRINITY_DN13809_c0_g1	1016	1037	1027	-26.40	-18.40	0.696969696969697	10	3-9,1035-1029;10-19,1027-1018	1-2,1037-1036[UP5];x-x,1028-1028[BULt];20-21,1017-1016[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	UCAGGUAACGGAUGAUAAGGCA&UAUUUUAUC-UUCGUUACCUUU	4	0.999985579703665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN13809_c0_g1_1027_TPlot.pdf
TRINITY_DN13809_c0_g1:1031	si_s799	TRINITY_DN13809_c0_g1	1019	1047	1031	-30.00	-21.00	0.7	18.5	1-7,1047-1041;8-12,1033-1029;13-21,1027-1019	x-x,1040-1034[BULt];x-x,1028-1028[BULt]	(((((((((.(((((.......(((((((&)))))))-------)))))-)))))))))	GGUAACGGAUGAUAAGGCAUAUGAUGCGA&UCGUAUU-------UUAUC-UUCGUUACC	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN13809_c0_g1_1031_TPlot.pdf
TRINITY_DN13809_c0_g1:1773	si_s887	TRINITY_DN13809_c0_g1	1762	1782	1773	-26.80	-18.60	0.694029850746269	18	10-21,1773-1762	1-9,1782-1774[UP5]	((((((((((((.........&.........))))))))))))	AGAGAAAGCCUGAAAAAACUG&AAAAAUAAAUAGGCUUUCUCU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN13809_c0_g1_1773_TPlot.pdf
TRINITY_DN13809_c0_g1:2066	si_a412	TRINITY_DN13809_c0_g1	2055	2075	2066	-18.30	-12.40	0.677595628415301	6	3-8,2073-2068;10-20,2066-2056	1-2,2075-2074[UP5];9-9,2067-2067[SIL];21-21,2055-2055[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	GAUUUAUUUAAAGAUAAACUA&UUGUUUAUAUUUAAAUAAAUA	3	0.999982117446275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN13809_c0_g1_2066_TPlot.pdf
TRINITY_DN1380_c0_g1:332	si_a69	TRINITY_DN1380_c0_g1	321	341	332	-24.00	-16.00	0.666666666666667	10	2-8,340-334;11-19,331-323	1-1,341-341[UP5];9-10,333-332[SIL];20-21,322-321[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	AAGAGAAGCAGCAUGAAGGAC&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999964079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1380_c0_g1_332_TPlot.pdf
TRINITY_DN1380_c0_g1:812	si_s39	TRINITY_DN1380_c0_g1	794	821	812	-22.30	-15.80	0.708520179372197	8	1-14,821-808;15-20,800-795	x-x,807-801[BULt];21-21,794-794[UP3]	.((((((.......((((((((((((((&))))))))))))))-------)))))).	CAAUCCAUUGUAUUAUUAUUAAAGAUUU&AAAUCUUUAAUAAU-------UGGAUUU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1380_c0_g1_812_TPlot.pdf
TRINITY_DN1380_c0_g1:813	si_s38	TRINITY_DN1380_c0_g1	795	822	813	-22.70	-15.80	0.696035242290749	8	2-15,821-808;16-21,800-795	1-1,822-822[UP5];x-x,807-801[BULt]	((((((.......((((((((((((((.&.))))))))))))))-------))))))	AAUCCAUUGUAUUAUUAUUAAAGAUUUU&UAAAUCUUUAAUAAU-------UGGAUU	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN1380_c0_g1_813_TPlot.pdf
TRINITY_DN13810_c0_g1:803	si_s76	TRINITY_DN13810_c0_g1	792	812	803	-23.60	-18.00	0.76271186440678	8.5	2-8,811-805;10-19,803-794	1-1,812-812[UP5];9-9,804-804[SIL];20-21,793-792[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UCGAAGGGAAAGUGGAAAGAA&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13810_c0_g1_803_TPlot.pdf
TRINITY_DN13829_c0_g1:1371	si_s805	TRINITY_DN13829_c0_g1	1360	1380	1371	-28.60	-23.70	0.828671328671329	6.5	2-18,1379-1363;20-21,1361-1360	1-1,1380-1380[UP5];19-19,1362-1362[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GGCGGAGGUGACGAGGAUAGU&UUUAUCUUCGUUACCUUUUCU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN13829_c0_g1_1371_TPlot.pdf
TRINITY_DN13829_c0_g1:1373	si_s803	TRINITY_DN13829_c0_g1	1362	1382	1373	-26.00	-22.90	0.880769230769231	9.5	4-20,1379-1363	1-3,1382-1380[UP5];21-21,1362-1362[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGGAGGUGACGAGGAUAGUGA&AUUUUAUCUUCGUUACCUUUU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN13829_c0_g1_1373_TPlot.pdf
TRINITY_DN13829_c0_g1:1375	si_s801	TRINITY_DN13829_c0_g1	1364	1383	1375	-28.20	-22.80	0.808510638297872	9	1-2,1383-1382;6-21,1379-1364	3-5,1381-1380[AILq]	((((((((((((((((..-((&))...))))))))))))))))	GAGGUGACGAGGAUAGUG-AC&GUAUUUUAUCUUCGUUACCUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN13829_c0_g1_1375_TPlot.pdf
TRINITY_DN13829_c0_g1:1389	si_s797	TRINITY_DN13829_c0_g1	1368	1398	1389	-30.00	-19.70	0.656666666666667	24	2-10,1397-1389;11-21,1378-1368	1-1,1398-1398[UP5];x-x,1388-1379[BULt]	(((((((((((..........(((((((((.&.)))))))))----------)))))))))))	UGACGAGGAUAGUGACGGUGAAGAUACGGGG&GCUCGUAUUU----------UAUCUUCGUUA	4	0.999999993731687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN13829_c0_g1_1389_TPlot.pdf
TRINITY_DN13829_c0_g1:2289	si_a700	TRINITY_DN13829_c0_g1	2271	2298	2289	-32.80	-21.48	0.654878048780488	19	1-12,2298-2287;15-19,2277-2273	13-14,2286-2278[AILt];20-21,2272-2271[UP3]	..(((((.........((((((((((((&))))))))))))-------..)))))..	GCUUGGACCUUCAUUCGUGCCAGUUGUG&CACAACUGGUAC-------AUUCCAAAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN13829_c0_g1_2289_TPlot.pdf
TRINITY_DN13829_c0_g1:3053	si_s72	TRINITY_DN13829_c0_g1	3042	3062	3053	-24.10	-18.30	0.759336099585062	8.5	1-4,3062-3059;6-19,3057-3044	5-5,3058-3058[SIL];20-21,3043-3042[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	UCGGAAAGAGAGGGAAGAGAG&UUCUAUUUUUUUUCUUUCCUU	4	0.999999855519305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13829_c0_g1_3053_TPlot.pdf
TRINITY_DN13829_c0_g1:4682	si_s90	TRINITY_DN13829_c0_g1	4670	4691	4682	-35.30	-25.90	0.73371104815864	8.5	1-17,4691-4675;18-20,4673-4671	x-x,4674-4674[BULt];21-21,4670-4670[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	GCGGUGGCGGAGGAGGGGGAGG&CUUUCUUCUUCUUCGCU-UCGG	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN13829_c0_g1_4682_TPlot.pdf
TRINITY_DN13829_c0_g1:4688	si_s79	TRINITY_DN13829_c0_g1	4677	4697	4688	-26.20	-18.30	0.698473282442748	16	7-20,4691-4678	1-6,4697-4692[UP5];21-21,4677-4677[UP3]	.((((((((((((((......&......)))))))))))))).	CGGAGGAGGGGGAGGUUGUAU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN13829_c0_g1_4688_TPlot.pdf
TRINITY_DN13829_c0_g1:4795	si_a564	TRINITY_DN13829_c0_g1	4777	4804	4795	-37.60	-25.00	0.664893617021277	19.5	2-12,4803-4793;14-20,4784-4778	1-1,4804-4804[UP5];13-13,4792-4785[AILt];21-21,4777-4777[UP3]	.(((((((........(((((((((((.&.)))))))))))-------.))))))).	CCAUACGGAACCCGAAUCGCGGGGGGAG&AUCUCCCCGUGA-------AUCGUAUGU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN13829_c0_g1_4795_TPlot.pdf
TRINITY_DN13829_c0_g1:4796	si_a563	TRINITY_DN13829_c0_g1	4785	4805	4796	-37.20	-24.70	0.663978494623656	10	3-13,4803-4793;15-17,4791-4789	1-2,4805-4804[UP5];14-14,4792-4792[SIL];18-21,4788-4785[UP3]	....(((.(((((((((((..&..))))))))))).)))....	AACCCGAAUCGCGGGGGGAGG&UAUCUCCCCGUGAAUCGUAUG	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a563_TRINITY_DN13829_c0_g1_4796_TPlot.pdf
TRINITY_DN13829_c0_g1:4798	si_a561	TRINITY_DN13829_c0_g1	4787	4807	4798	-35.40	-24.70	0.69774011299435	11.5	5-15,4803-4793;17-19,4791-4789	1-4,4807-4804[UP5];16-16,4792-4792[SIL];20-21,4788-4787[UP3]	..(((.(((((((((((....&....))))))))))).)))..	CCCGAAUCGCGGGGGGAGGGG&UUUAUCUCCCCGUGAAUCGUA	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN13829_c0_g1_4798_TPlot.pdf
TRINITY_DN13829_c0_g1:4799	si_a560	TRINITY_DN13829_c0_g1	4788	4808	4799	-36.60	-26.70	0.729508196721311	8.5	1-4,4808-4805;6-16,4803-4793;18-20,4791-4789	5-5,4804-4804[SIL];17-17,4792-4792[SIL];21-21,4788-4788[UP3]	.(((.(((((((((((.((((&)))).))))))))))).))).	CCGAAUCGCGGGGGGAGGGGG&CUUUAUCUCCCCGUGAAUCGU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN13829_c0_g1_4799_TPlot.pdf
TRINITY_DN13829_c0_g1:4804	si_a555	TRINITY_DN13829_c0_g1	4793	4813	4804	-33.70	-25.30	0.750741839762611	11	4-9,4810-4805;11-21,4803-4793	1-3,4813-4811[UP5];10-10,4804-4804[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UCGCGGGGGGAGGGGGAACGG&UAUUUCUUUAUCUCCCCGUGA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN13829_c0_g1_4804_TPlot.pdf
TRINITY_DN1382_c0_g1:1320	si_s75	TRINITY_DN1382_c0_g1	1309	1329	1320	-24.00	-17.30	0.720833333333333	5	1-11,1329-1319;13-19,1317-1311	12-12,1318-1318[SIL];20-21,1310-1309[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UAAAAGGAAUGAAAAGAAAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999977532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1382_c0_g1_1320_TPlot.pdf
TRINITY_DN1382_c0_g1:249	si_s899	TRINITY_DN1382_c0_g1	238	258	249	-28.30	-19.80	0.699646643109541	7.5	2-13,257-246;15-18,244-241	1-1,258-258[UP5];14-14,245-245[SIL];19-21,240-238[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	UUGUGAGUUUGAAGGGAGAGA&GCUUUCUCUUCAAUUUCAAUU	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN1382_c0_g1_249_TPlot.pdf
TRINITY_DN1382_c0_g1:262	si_s72	TRINITY_DN1382_c0_g1	250	271	262	-24.10	-16.20	0.672199170124481	9	4-10,268-262;11-21,260-250	1-3,271-269[UP5];x-x,261-261[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AGGGAGAGAAACAGAAAUAUUG&UUCUAUUUUU-UUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1382_c0_g1_262_TPlot.pdf
TRINITY_DN1382_c0_g1:292	si_a469	TRINITY_DN1382_c0_g1	281	301	292	-21.10	-13.90	0.658767772511848	13	7-21,295-281	1-6,301-296[UP5]	(((((((((((((((......&......)))))))))))))))	AUAAUAGUAAUUGCAAUAAGG&AUAAUAUGUAAUUAUUGUUAU	4	0.999999214893531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN1382_c0_g1_292_TPlot.pdf
TRINITY_DN1382_c0_g1:425	si_s502	TRINITY_DN1382_c0_g1	414	434	425	-22.40	-14.90	0.665178571428572	10.5	6-20,429-415	1-5,434-430[UP5];21-21,414-414[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAUAUGGAAUUGUUUUUAUAU&UAAACAAAACAAUUCUAUAUU	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN1382_c0_g1_425_TPlot.pdf
TRINITY_DN1382_c0_g1:426	si_s501	TRINITY_DN1382_c0_g1	415	435	426	-22.60	-14.90	0.65929203539823	11.5	7-21,429-415	1-6,435-430[UP5]	(((((((((((((((......&......)))))))))))))))	AUAUGGAAUUGUUUUUAUAUU&AUAAACAAAACAAUUCUAUAU	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s501_TRINITY_DN1382_c0_g1_426_TPlot.pdf
TRINITY_DN1382_c0_g1:751	si_s80	TRINITY_DN1382_c0_g1	740	760	751	-28.20	-18.60	0.659574468085106	9	3-17,758-744	1-2,760-759[UP5];18-21,743-740[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUCAAGAAGGGAAAGAAGUU&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1382_c0_g1_751_TPlot.pdf
TRINITY_DN1382_c0_g1:752	si_s79	TRINITY_DN1382_c0_g1	741	761	752	-26.20	-18.60	0.709923664122137	9.5	4-18,758-744	1-3,761-759[UP5];19-21,743-741[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCAAGAAGGGAAAGAAGUUU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1382_c0_g1_752_TPlot.pdf
TRINITY_DN1382_c0_g1:754	si_s77	TRINITY_DN1382_c0_g1	743	763	754	-25.50	-18.60	0.729411764705882	11.5	6-20,758-744	1-5,763-759[UP5];21-21,743-743[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAAGAAGGGAAAGAAGUUUCU&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999939187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1382_c0_g1_754_TPlot.pdf
TRINITY_DN1382_c0_g1:758	si_a181	TRINITY_DN1382_c0_g1	747	766	758	-32.00	-20.80	0.65	7	2-6,765-761;8-10,760-758;12-20,756-748	1-1,766-766[UP5];7-7,x-x[BULq];11-11,757-757[SIL];21-21,747-747[UP3]	.(((((((((.(((-(((((.&.))))).))).))))))))).	AAGGGAAAGAAGUU-UCUAGG&UCUAGAUAAUAUCUUUCCCUG	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN1382_c0_g1_758_TPlot.pdf
TRINITY_DN13830_c0_g1:2947	si_s898	TRINITY_DN13830_c0_g1	2935	2956	2947	-30.70	-25.50	0.830618892508143	6.5	1-14,2956-2943;15-19,2941-2937	x-x,2942-2942[BULt];20-21,2936-2935[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	GAUGAAGCUUGAGGAGAGGGCC&GGCUUUCUCUUCAA-UUUCAAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN13830_c0_g1_2947_TPlot.pdf
TRINITY_DN13831_c0_g1:1641	si_s71	TRINITY_DN13831_c0_g1	1629	1650	1641	-25.70	-20.00	0.778210116731518	7.5	1-6,1650-1645;9-19,1642-1632;20-21,1630-1629	7-8,1644-1643[SIL];x-x,1631-1631[BULt]	((.(((((((((((..((((((&))))))..)))))))))))-))	AGUGAAAGAGAAGAUUUAGAGG&CUUCUAUUUUUUUUCUUUC-CU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13831_c0_g1_1641_TPlot.pdf
TRINITY_DN13831_c0_g1:1642	si_s70	TRINITY_DN13831_c0_g1	1631	1651	1642	-25.80	-19.10	0.74031007751938	8.5	2-7,1650-1645;10-20,1642-1632	1-1,1651-1651[UP5];8-9,1644-1643[SIL];21-21,1631-1631[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	UGAAAGAGAAGAUUUAGAGGA&ACUUCUAUUUUUUUUCUUUCC	2	0.997809236631373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13831_c0_g1_1642_TPlot.pdf
TRINITY_DN13831_c0_g1:1643	si_s69	TRINITY_DN13831_c0_g1	1632	1652	1643	-23.40	-19.10	0.816239316239316	9.5	3-8,1650-1645;11-21,1642-1632	1-2,1652-1651[UP5];9-10,1644-1643[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GAAAGAGAAGAUUUAGAGGAU&AACUUCUAUUUUUUUUCUUUC	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN13831_c0_g1_1643_TPlot.pdf
TRINITY_DN13831_c0_g1:1644	si_s68	TRINITY_DN13831_c0_g1	1633	1653	1644	-23.10	-17.00	0.735930735930736	8	1-2,1653-1652;4-9,1650-1645;12-21,1642-1633	3-3,1651-1651[SIL];10-11,1644-1643[SIL]	((((((((((..((((((.((&)).))))))..))))))))))	AAAGAGAAGAUUUAGAGGAUG&CAACUUCUAUUUUUUUUCUUU	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13831_c0_g1_1644_TPlot.pdf
TRINITY_DN13831_c0_g1:2515	si_a761	TRINITY_DN13831_c0_g1	2502	2524	2515	-30.10	-22.20	0.737541528239203	10	2-12,2523-2513;13-21,2510-2502	1-1,2524-2524[UP5];x-x,2512-2511[BULt]	(((((((((..(((((((((((.&.)))))))))))--)))))))))	AGUCGAUCAGAGAAGCCUAGAGA&CCUUUGGGUUUU--UGAUUGAUU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN13831_c0_g1_2515_TPlot.pdf
TRINITY_DN13831_c0_g1:2516	si_a760	TRINITY_DN13831_c0_g1	2503	2525	2516	-31.10	-21.40	0.688102893890675	9.5	3-13,2523-2513;14-21,2510-2503	1-2,2525-2524[UP5];x-x,2512-2511[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GUCGAUCAGAGAAGCCUAGAGAU&UCCUUUGGGUUUU--UGAUUGAU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN13831_c0_g1_2516_TPlot.pdf
TRINITY_DN13831_c0_g2:1386	si_s70	TRINITY_DN13831_c0_g2	1375	1395	1386	-25.80	-19.10	0.74031007751938	8.5	2-7,1394-1389;10-20,1386-1376	1-1,1395-1395[UP5];8-9,1388-1387[SIL];21-21,1375-1375[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	UGAAAGAGAAGAUUUAGAGGA&ACUUCUAUUUUUUUUCUUUCC	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13831_c0_g2_1386_TPlot.pdf
TRINITY_DN13831_c0_g2:1387	si_s69	TRINITY_DN13831_c0_g2	1376	1396	1387	-23.40	-19.10	0.816239316239316	9.5	3-8,1394-1389;11-21,1386-1376	1-2,1396-1395[UP5];9-10,1388-1387[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GAAAGAGAAGAUUUAGAGGAU&AACUUCUAUUUUUUUUCUUUC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN13831_c0_g2_1387_TPlot.pdf
TRINITY_DN13831_c0_g2:1388	si_s68	TRINITY_DN13831_c0_g2	1377	1397	1388	-23.10	-17.00	0.735930735930736	8	1-2,1397-1396;4-9,1394-1389;12-21,1386-1377	3-3,1395-1395[SIL];10-11,1388-1387[SIL]	((((((((((..((((((.((&)).))))))..))))))))))	AAAGAGAAGAUUUAGAGGAUG&CAACUUCUAUUUUUUUUCUUU	4	0.999993418734587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13831_c0_g2_1388_TPlot.pdf
TRINITY_DN13831_c0_g2:2260	si_a760	TRINITY_DN13831_c0_g2	2247	2269	2260	-31.10	-21.40	0.688102893890675	9.5	3-13,2267-2257;14-21,2254-2247	1-2,2269-2268[UP5];x-x,2256-2255[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GUCGAUCAGAGAAGCCUAGAGAU&UCCUUUGGGUUUU--UGAUUGAU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN13831_c0_g2_2260_TPlot.pdf
TRINITY_DN13832_c0_g1:1667	si_a760	TRINITY_DN13832_c0_g1	1657	1676	1667	-31.10	-24.00	0.771704180064309	7	1-14,1676-1663;17-21,1661-1657	15-16,1662-1662[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	AUCGGA-GGAAGCCCGGAGGA&UCCUUUGGGUUUUUGAUUGAU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN13832_c0_g1_1667_TPlot.pdf
TRINITY_DN13832_c0_g1:1668	si_a759	TRINITY_DN13832_c0_g1	1658	1677	1668	-32.60	-23.00	0.705521472392638	8	2-15,1676-1663;18-21,1661-1658	1-1,1677-1677[UP5];16-17,1662-1662[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	UCGGA-GGAAGCCCGGAGGAA&CUCCUUUGGGUUUUUGAUUGA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN13832_c0_g1_1668_TPlot.pdf
TRINITY_DN13832_c0_g1:1675	si_s88	TRINITY_DN13832_c0_g1	1664	1685	1675	-34.80	-23.10	0.663793103448276	8.5	1-5,1685-1681;7-14,1678-1671;17-21,1668-1664	6-6,1680-1679[AILt];15-16,1670-1669[SIL]	(((((..((((((((..(((((&)))))-.))))))))..)))))	GAAGCCCGGAGGAAGUUGAGGA&UCCUU-UCUUCUUCUUCGCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN13832_c0_g1_1675_TPlot.pdf
TRINITY_DN13832_c0_g1:1768	si_a345	TRINITY_DN13832_c0_g1	1757	1778	1768	-26.90	-18.40	0.684014869888476	9.5	1-6,1778-1773;8-16,1770-1762;18-19,1760-1759	7-7,1772-1771[AILt];17-17,1761-1761[SIL];20-21,1758-1757[UP3]	..((.(((((((((..((((((&))))))-.))))))))).))..	AGGGUGUUGAUGUUGAUCGGGA&UCCCGA-AAAUAUUAAUUCUAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN13832_c0_g1_1768_TPlot.pdf
TRINITY_DN13832_c0_g1:2216	si_s69	TRINITY_DN13832_c0_g1	2205	2225	2216	-23.40	-15.80	0.675213675213675	9.5	2-5,2224-2221;8-21,2218-2205	1-1,2225-2225[UP5];6-7,2220-2219[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	GAGAGAGAGAAAGUCAGGGUC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN13832_c0_g1_2216_TPlot.pdf
TRINITY_DN13835_c0_g1:41	si_a351	TRINITY_DN13835_c0_g1	30	50	41	-20.50	-13.60	0.663414634146341	9.5	4-18,47-33	1-3,50-48[UP5];19-21,32-30[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAAAAUGGAGUUAAUAAAU&AAAUAUUAAUUCUAUUUUGAU	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN13835_c0_g1_41_TPlot.pdf
TRINITY_DN13839_c1_g1:1731	si_a636	TRINITY_DN13839_c1_g1	1720	1740	1731	-26.30	-17.36	0.660076045627376	11.5	1-5,1740-1736;10-20,1731-1721	6-9,1735-1732[SIL];21-21,1720-1720[UP3]	.(((((((((((....(((((&)))))....))))))))))).	AAUUGCUCAAGAUACACGGCA&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN13839_c1_g1_1731_TPlot.pdf
TRINITY_DN1383_c0_g1:1761	si_s819	TRINITY_DN1383_c0_g1	1750	1770	1761	-23.00	-15.40	0.669565217391304	8	3-17,1768-1754	1-2,1770-1769[UP5];18-21,1753-1750[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUAUUCAUUAUUAGGAAAUA&CUUUUCUUAAUAAUGAAAAAC	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN1383_c0_g1_1761_TPlot.pdf
TRINITY_DN1383_c0_g1:4027	si_s484	TRINITY_DN1383_c0_g1	4016	4036	4027	-20.50	-13.50	0.658536585365854	7.5	1-6,4036-4031;8-14,4029-4023;16-19,4021-4018	7-7,4030-4030[SIL];15-15,4022-4022[SIL];20-21,4017-4016[UP3]	..((((.(((((((.((((((&)))))).))))))).))))..	UAGUGUGUGAAUGAUUAUAGG&CCUAUAUUUAUUUAAAUAUAA	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN1383_c0_g1_4027_TPlot.pdf
TRINITY_DN13843_c0_g1:426	si_a403	TRINITY_DN13843_c0_g1	415	435	426	-22.00	-16.80	0.763636363636364	8	2-16,434-420	1-1,435-435[UP5];17-21,419-415[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GACGUUGGACAAAACGAUUCA&AGAAUUGUUUUGUUUAUAUUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN13843_c0_g1_426_TPlot.pdf
TRINITY_DN13848_c0_g1:1812	si_a546	TRINITY_DN13848_c0_g1	1804	1821	1812	-28.60	-18.90	0.660839160839161	5.5	1-11,1821-1811;15-21,1810-1804	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	GAUAAAG---UAGGUUGAACU&GGUUCAAUCUAUUUCUUUAUC	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN13848_c0_g1_1812_TPlot.pdf
TRINITY_DN13848_c0_g2:1292	si_a423	TRINITY_DN13848_c0_g2	1277	1301	1292	-27.10	-19.40	0.715867158671587	9.5	4-14,1298-1288;15-21,1283-1277	1-3,1301-1299[UP5];x-x,1287-1284[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	GACGGAUUGAACCUAUAUUUAUAUC&UAAAUAAAUAUAGG----AUCCGUU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a423_TRINITY_DN13848_c0_g2_1292_TPlot.pdf
TRINITY_DN13848_c0_g2:1293	si_a422	TRINITY_DN13848_c0_g2	1278	1302	1293	-27.20	-18.30	0.672794117647059	11	5-15,1298-1288;16-21,1283-1278	1-4,1302-1299[UP5];x-x,1287-1284[BULt]	((((((....(((((((((((....&....)))))))))))----))))))	ACGGAUUGAACCUAUAUUUAUAUCU&UUAAAUAAAUAUAGG----AUCCGU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN13848_c0_g2_1293_TPlot.pdf
TRINITY_DN1384_c0_g1:157	si_s397	TRINITY_DN1384_c0_g1	146	167	157	-32.10	-21.80	0.679127725856698	8.5	1-7,167-161;9-18,158-149	8-8,160-159[AILt];19-21,148-146[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AUAUUCGUUUUCUGAUGGAAUG&CAUUCCA-AGGAAGACGAAAAA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN1384_c0_g1_157_TPlot.pdf
TRINITY_DN1384_c0_g2:1590	si_s75	TRINITY_DN1384_c0_g2	1579	1599	1590	-24.00	-15.90	0.6625	7.5	3-15,1597-1585;17-21,1583-1579	1-2,1599-1598[UP5];16-16,1584-1584[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAGAAGAAGGAAAAGAAGCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1384_c0_g2_1590_TPlot.pdf
TRINITY_DN1384_c0_g2:981	si_s49	TRINITY_DN1384_c0_g2	972	990	981	-29.30	-19.20	0.655290102389078	9.5	5-16,986-975;19-21,974-972	1-4,990-987[UP5];17-18,x-x[BULq]	(((--((((((((((((....&....))))))))))))..)))	UGC--GCUUGAAAUCCACCGG&UAAUUGGAUUUCAAGUUAGCA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN1384_c0_g2_981_TPlot.pdf
TRINITY_DN13850_c0_g1:609	si_a454	TRINITY_DN13850_c0_g1	598	618	609	-21.30	-14.20	0.666666666666667	11.5	4-20,615-599	1-3,618-616[UP5];21-21,598-598[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGUUGUAUGUGAUAAUGAGGU&UAAUUGUUGUUAUAUAUAAUA	3	0.999999594151943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN13850_c0_g1_609_TPlot.pdf
TRINITY_DN13850_c0_g1:617	si_s2	TRINITY_DN13850_c0_g1	606	626	617	-20.50	-14.58	0.711219512195122	8.5	1-7,626-620;11-21,616-606	8-10,619-617[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	GUGAUAAUGAGGUUUGUAAAG&UUUUAUAUUACUUAUUAUUAC	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN13850_c0_g1_617_TPlot.pdf
TRINITY_DN13861_c0_g1:635	si_s375	TRINITY_DN13861_c0_g1	624	643	635	-44.10	-29.10	0.659863945578231	7	1-6,643-638;8-9,637-636;11-21,634-624	7-7,x-x[BULq];10-10,635-635[SIL]	(((((((((((.((-((((((&)))))).)).)))))))))))	AAGGUGGAUGCAUG-GCGAUC&GAUCGCUCGCGUGUCCGCCUU	2	0.997639373744729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN13861_c0_g1_635_TPlot.pdf
TRINITY_DN13867_c1_g2:827	si_a308	TRINITY_DN13867_c1_g2	816	835	827	-32.70	-21.80	0.666666666666667	6.5	1-7,835-829;9-18,828-819	8-8,x-x[BULq];19-21,818-816[UP3]	...((((((((((-(((((((&))))))).))))))))))...	UAAGGGUAAAUCU-AGCGAAU&AUUCGCUUGGAUUUAUCCAUG	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN13867_c1_g2_827_TPlot.pdf
TRINITY_DN13869_c0_g1:343	si_s494	TRINITY_DN13869_c0_g1	332	353	343	-19.80	-15.40	0.777777777777778	5	3-7,351-347;8-21,345-332	1-2,353-352[UP5];x-x,346-346[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	AUUGUUUUGUUUAUCAUUUAUA&UUUAAAU-AUAAACAAAACAAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN13869_c0_g1_343_TPlot.pdf
TRINITY_DN1386_c0_g1:2218	si_s69	TRINITY_DN1386_c0_g1	2207	2233	2218	-23.40	-16.30	0.696581196581197	15.5	3-7,2231-2227;8-21,2220-2207	1-2,2233-2232[UP5];x-x,2226-2221[BULt]	((((((((((((((......(((((..&..)))))------))))))))))))))	GAAAGAAGAAAAAUGUCAAAAGAAGCA&AACUUCU------AUUUUUUUUCUUUC	2	0.999999999988527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1386_c0_g1_2218_TPlot.pdf
TRINITY_DN13872_c0_g1:24	si_s582	TRINITY_DN13872_c0_g1	13	33	24	-22.50	-15.10	0.671111111111111	13	6-17,28-17	1-5,33-29[UP5];18-21,16-13[UP3]	....((((((((((((.....&.....))))))))))))....	CAACAUCCAUGAUUUUGUCCA&AUAAAAAAAUCAUGGAUAAAU	1	0.0407858290829631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN13872_c0_g1_24_TPlot.pdf
TRINITY_DN13872_c0_g1:26	si_s580	TRINITY_DN13872_c0_g1	15	38	26	-24.40	-16.10	0.659836065573771	14	1-4,38-35;8-19,28-17	5-7,34-29[AILt];20-21,16-15[UP3]	..((((((((((((......((((&))))---...))))))))))))..	ACAUCCAUGAUUUUGUCCAGAUUC&GAAU---AAAAAAAUCAUGGAUAA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN13872_c0_g1_26_TPlot.pdf
TRINITY_DN13873_c0_g1:1152	si_a328	TRINITY_DN13873_c0_g1	1141	1161	1152	-30.10	-24.20	0.803986710963455	8	1-5,1161-1157;7-9,1155-1153;11-21,1151-1141	6-6,1156-1156[SIL];10-10,1152-1152[SIL]	(((((((((((.(((.(((((&))))).))).)))))))))))	GGGACAAGGAGGAAGUGGAUC&GAUUUUUUUAUUCCUUGUCCC	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN13873_c0_g1_1152_TPlot.pdf
TRINITY_DN13873_c0_g1:1352	si_a784	TRINITY_DN13873_c0_g1	1341	1362	1352	-24.70	-17.40	0.704453441295547	10.5	1-5,1362-1358;6-16,1356-1346	x-x,1357-1357[BULt];17-21,1345-1341[UP3]	.....(((((((((((.(((((&)))))-))))))))))).....	AUGGAGGAAGAGUAGAUGGAGU&ACUCU-UCUAUUUUUCUAUUUU	2	0.999985827335772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13873_c0_g1_1352_TPlot.pdf
TRINITY_DN13873_c0_g1:1353	si_a783	TRINITY_DN13873_c0_g1	1342	1363	1353	-24.70	-17.60	0.712550607287449	10	2-6,1362-1358;7-17,1356-1346	1-1,1363-1363[UP5];x-x,1357-1357[BULt];18-21,1345-1342[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	UGGAGGAAGAGUAGAUGGAGUA&AACUCU-UCUAUUUUUCUAUUU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN13873_c0_g1_1353_TPlot.pdf
TRINITY_DN13873_c0_g1:1448	si_a186	TRINITY_DN13873_c0_g1	1437	1459	1448	-31.50	-21.10	0.66984126984127	15.5	7-9,1453-1451;10-21,1448-1437	1-6,1459-1454[UP5];x-x,1450-1449[BULt]	((((((((((((..(((......&......)))--))))))))))))	GUGGACAGGGAACUAGACCAGGA&AUAAUAUCU--UUCCCUGUUCAC	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN13873_c0_g1_1448_TPlot.pdf
TRINITY_DN13873_c0_g1:1528	si_s18	TRINITY_DN13873_c0_g1	1517	1537	1528	-27.50	-18.80	0.683636363636364	7.5	1-8,1537-1530;10-17,1528-1521	9-9,1529-1529[SIL];18-21,1520-1517[UP3]	....((((((((.((((((((&)))))))).))))))))....	UACAGCAGUCAAAAUAGUGAU&AUUACUAUAUUGAUUGCAACU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN13873_c0_g1_1528_TPlot.pdf
TRINITY_DN13873_c0_g1:1529	si_s17	TRINITY_DN13873_c0_g1	1518	1538	1529	-27.20	-19.60	0.720588235294118	7	1-9,1538-1530;11-18,1528-1521	10-10,1529-1529[SIL];19-21,1520-1518[UP3]	...((((((((.(((((((((&))))))))).))))))))...	ACAGCAGUCAAAAUAGUGAUG&UAUUACUAUAUUGAUUGCAAC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN13873_c0_g1_1529_TPlot.pdf
TRINITY_DN13873_c0_g1:1530	si_s16	TRINITY_DN13873_c0_g1	1519	1539	1530	-25.60	-19.60	0.765625	7.5	2-10,1538-1530;12-19,1528-1521	1-1,1539-1539[UP5];11-11,1529-1529[SIL];20-21,1520-1519[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	CAGCAGUCAAAAUAGUGAUGU&UUAUUACUAUAUUGAUUGCAA	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN13873_c0_g1_1530_TPlot.pdf
TRINITY_DN13873_c0_g1:1532	si_s14	TRINITY_DN13873_c0_g1	1521	1541	1532	-25.30	-19.10	0.754940711462451	8.5	4-12,1538-1530;14-21,1528-1521	1-3,1541-1539[UP5];13-13,1529-1529[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GCAGUCAAAAUAGUGAUGUGA&UAUUAUUACUAUAUUGAUUGC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN13873_c0_g1_1532_TPlot.pdf
TRINITY_DN13873_c0_g1:1533	si_s13	TRINITY_DN13873_c0_g1	1522	1542	1533	-22.90	-15.80	0.689956331877729	10.5	5-13,1538-1530;15-21,1528-1522	1-4,1542-1539[UP5];14-14,1529-1529[SIL]	(((((((.(((((((((....&....))))))))).)))))))	CAGUCAAAAUAGUGAUGUGAC&UUAUUAUUACUAUAUUGAUUG	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN13873_c0_g1_1533_TPlot.pdf
TRINITY_DN13873_c0_g1:1559	si_s68	TRINITY_DN13873_c0_g1	1548	1568	1559	-23.10	-15.80	0.683982683982684	11.5	1-7,1568-1562;10-18,1559-1551	8-9,1561-1560[SIL];19-21,1550-1548[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	GUCGAGGAGGGAGUGGAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999999999847248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN13873_c0_g1_1559_TPlot.pdf
TRINITY_DN13873_c0_g1:1614	si_a337	TRINITY_DN13873_c0_g1	1603	1623	1614	-30.80	-20.70	0.672077922077922	10	2-12,1622-1612	1-1,1623-1623[UP5];13-21,1611-1603[UP3]	.........(((((((((((.&.))))))))))).........	CGGAGUAGGGGGACAAGGAAG&AUUCCUUGUCCCGAAAAUAUU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN13873_c0_g1_1614_TPlot.pdf
TRINITY_DN13873_c0_g1:1615	si_a336	TRINITY_DN13873_c0_g1	1604	1624	1615	-31.20	-20.70	0.663461538461538	11	3-13,1622-1612	1-2,1624-1623[UP5];14-21,1611-1604[UP3]	........(((((((((((..&..)))))))))))........	GGAGUAGGGGGACAAGGAAGU&UAUUCCUUGUCCCGAAAAUAU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN13873_c0_g1_1615_TPlot.pdf
TRINITY_DN13873_c0_g1:1618	si_a333	TRINITY_DN13873_c0_g1	1607	1627	1618	-30.60	-20.70	0.676470588235294	14	6-16,1622-1612	1-5,1627-1623[UP5];17-21,1611-1607[UP3]	.....(((((((((((.....&.....))))))))))).....	GUAGGGGGACAAGGAAGUCCU&UUUUAUUCCUUGUCCCGAAAA	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN13873_c0_g1_1618_TPlot.pdf
TRINITY_DN13873_c0_g1:1622	si_a329	TRINITY_DN13873_c0_g1	1611	1634	1622	-29.60	-21.82	0.737162162162162	15	1-7,1634-1628;10-20,1622-1612	8-9,1627-1623[AILt];21-21,1611-1611[UP3]	.(((((((((((.....(((((((&)))))))---..))))))))))).	GGGGACAAGGAAGUCCUGGAGGAU&AUUUUUU---UAUUCCUUGUCCCG	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN13873_c0_g1_1622_TPlot.pdf
TRINITY_DN13873_c0_g1:1623	si_a328	TRINITY_DN13873_c0_g1	1612	1635	1623	-30.10	-24.62	0.817940199335548	14	1-8,1635-1628;11-21,1622-1612	9-10,1627-1623[AILt]	(((((((((((.....((((((((&))))))))---..)))))))))))	GGGACAAGGAAGUCCUGGAGGAUC&GAUUUUUU---UAUUCCUUGUCCC	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN13873_c0_g1_1623_TPlot.pdf
TRINITY_DN13873_c0_g1:1624	si_a327	TRINITY_DN13873_c0_g1	1613	1636	1624	-28.40	-21.52	0.757746478873239	15	2-9,1635-1628;12-21,1622-1613	1-1,1636-1636[UP5];10-11,1627-1623[AILt]	((((((((((.....((((((((.&.))))))))---..))))))))))	GGACAAGGAAGUCCUGGAGGAUCU&UGAUUUUUU---UAUUCCUUGUCC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN13873_c0_g1_1624_TPlot.pdf
TRINITY_DN13873_c0_g1:1900	si_s87	TRINITY_DN13873_c0_g1	1886	1910	1900	-32.90	-22.40	0.680851063829787	10.5	1-8,1910-1903;9-15,1901-1895;16-19,1891-1888	x-x,1902-1902[BULt];x-x,1894-1892[BULt];20-21,1887-1886[UP3]	..((((...(((((((.((((((((&))))))))-)))))))---))))..	ACGCGAAUCGGAGGAACGGGAGGAA&UUCCUUUC-UUCUUCU---UCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN13873_c0_g1_1900_TPlot.pdf
TRINITY_DN13873_c0_g1:1909	si_s70	TRINITY_DN13873_c0_g1	1898	1918	1909	-25.80	-17.30	0.670542635658915	10	3-16,1916-1903;18-21,1901-1898	1-2,1918-1917[UP5];17-17,1902-1902[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GGAACGGGAGGAAGUGGAGUA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13873_c0_g1_1909_TPlot.pdf
TRINITY_DN13873_c0_g1:2128	si_s89	TRINITY_DN13873_c0_g1	2118	2138	2128	-35.30	-24.30	0.688385269121813	7.5	1-2,2138-2137;3-15,2135-2123;17-20,2122-2119	x-x,2136-2136[BULt];16-16,x-x[BULq];21-21,2118-2118[UP3]	.((((-(((((((((((((.((&))-))))))))))))).)))).	AGGAG-GAAGAGGAGGAGAUGG&CC-UUUCUUCUUCUUCGCUUCG	2	0.999994763658077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN13873_c0_g1_2128_TPlot.pdf
TRINITY_DN13873_c0_g1:2130	si_s87	TRINITY_DN13873_c0_g1	2120	2140	2130	-32.90	-23.60	0.717325227963526	7	1-4,2140-2137;5-17,2135-2123;19-21,2122-2120	x-x,2136-2136[BULt];18-18,x-x[BULq]	(((-(((((((((((((.((((&))))-))))))))))))).)))	GAG-GAAGAGGAGGAGAUGGAG&UUCC-UUUCUUCUUCUUCGCUU	4	0.999999926891251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN13873_c0_g1_2130_TPlot.pdf
TRINITY_DN13873_c0_g1:2132	si_s71	TRINITY_DN13873_c0_g1	2121	2141	2132	-25.70	-17.10	0.665369649805448	8.5	2-14,2140-2128;16-21,2126-2121	1-1,2141-2141[UP5];15-15,2127-2127[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AGGAAGAGGAGGAGAUGGAGU&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13873_c0_g1_2132_TPlot.pdf
TRINITY_DN13873_c0_g1:2133	si_s84	TRINITY_DN13873_c0_g1	2122	2143	2133	-32.30	-22.10	0.68421052631579	11.5	4-7,2140-2137;8-20,2135-2123	1-3,2143-2141[UP5];x-x,2136-2136[BULt];21-21,2122-2122[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	GGAAGAGGAGGAGAUGGAGUCA&UCUUUCC-UUUCUUCUUCUUCG	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN13873_c0_g1_2133_TPlot.pdf
TRINITY_DN13873_c0_g1:2134	si_s83	TRINITY_DN13873_c0_g1	2123	2144	2134	-30.90	-21.50	0.6957928802589	12	5-8,2140-2137;9-21,2135-2123	1-4,2144-2141[UP5];x-x,2136-2136[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	GAAGAGGAGGAGAUGGAGUCAU&UUCUUUCC-UUUCUUCUUCUUC	2	0.999999999871675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN13873_c0_g1_2134_TPlot.pdf
TRINITY_DN13873_c0_g1:2149	si_a785	TRINITY_DN13873_c0_g1	2131	2158	2149	-25.90	-19.40	0.749034749034749	19.5	1-11,2158-2148;12-21,2140-2131	x-x,2147-2141[BULt]	((((((((((.......(((((((((((&)))))))))))-------))))))))))	GGAGAUGGAGUCAUAAUAGAUGGAGGAG&CUCUUCUAUUU-------UUCUAUUUUC	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN13873_c0_g1_2149_TPlot.pdf
TRINITY_DN13873_c0_g1:2678	si_s112	TRINITY_DN13873_c0_g1	2667	2687	2678	-24.80	-17.00	0.685483870967742	6.5	1-13,2687-2675;16-19,2672-2669	14-15,2674-2673[SIL];20-21,2668-2667[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	ACUUAUGCUUCUGUUUUCCGA&UUGGAAAAUAGAAAAAUAGAA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s112_TRINITY_DN13873_c0_g1_2678_TPlot.pdf
TRINITY_DN13873_c0_g1:2679	si_s111	TRINITY_DN13873_c0_g1	2668	2688	2679	-24.80	-17.00	0.685483870967742	6.5	2-14,2687-2675;17-20,2672-2669	1-1,2688-2688[UP5];15-16,2674-2673[SIL];21-21,2668-2668[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	CUUAUGCUUCUGUUUUCCGAA&AUUGGAAAAUAGAAAAAUAGA	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN13873_c0_g1_2679_TPlot.pdf
TRINITY_DN13873_c0_g1:2993	si_s72	TRINITY_DN13873_c0_g1	2979	3002	2993	-24.10	-15.82	0.65643153526971	15.5	1-11,3002-2992;14-21,2986-2979	12-13,2991-2987[AILt]	((((((((.....(((((((((((&)))))))))))---..))))))))	GAGGAGGGUUAUCAGAGGGUGGAA&UUCUAUUUUUU---UUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN13873_c0_g1_2993_TPlot.pdf
TRINITY_DN13873_c0_g1:3009	si_a787	TRINITY_DN13873_c0_g1	2998	3018	3009	-26.30	-19.50	0.741444866920152	8	2-13,3017-3006;15-21,3004-2998	1-1,3018-3018[UP5];14-14,3005-3005[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UGGAAGAGGGGGAGAUGGAGU&CUUCUAUUUUUCUAUUUUCCA	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN13873_c0_g1_3009_TPlot.pdf
TRINITY_DN13873_c0_g1:3017	si_a551	TRINITY_DN13873_c0_g1	3006	3026	3017	-31.60	-21.80	0.689873417721519	13.5	5-7,3022-3020;10-21,3017-3006	1-4,3026-3023[UP5];8-9,3019-3018[SIL]	((((((((((((..(((....&....)))..))))))))))))	GGGGAGAUGGAGUCGUAAUAA&AAUCUAUUUCUUUAUCUCCCC	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN13873_c0_g1_3017_TPlot.pdf
TRINITY_DN13873_c0_g1:3430	si_s79	TRINITY_DN13873_c0_g1	3418	3439	3430	-26.20	-17.60	0.67175572519084	14	6-15,3434-3425;16-20,3423-3419	1-5,3439-3435[UP5];x-x,3424-3424[BULt];21-21,3418-3418[UP3]	.(((((.((((((((((.....&.....))))))))))-))))).	UGGAAGAAGAGGAGGGAUAGCG&UUUUUUCUUUCCUUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN13873_c0_g1_3430_TPlot.pdf
TRINITY_DN13873_c0_g1:3435	si_s67	TRINITY_DN13873_c0_g1	3424	3444	3435	-25.60	-18.80	0.734375	7	2-6,3443-3439;8-21,3437-3424	1-1,3444-3444[UP5];7-7,3438-3438[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	AAGAGGAGGGAUAGCGGUUGG&GCAACUUCUAUUUUUUUUCUU	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN13873_c0_g1_3435_TPlot.pdf
TRINITY_DN13873_c0_g1:3510	si_a227	TRINITY_DN13873_c0_g1	3499	3523	3510	-26.80	-17.60	0.656716417910448	12.5	1-8,3523-3516;9-14,3511-3506;16-21,3504-3499	x-x,3515-3512[BULt];15-15,3505-3505[SIL]	((((((.((((((....((((((((&))))))))----)))))).))))))	AAUUGGAUAUGGAGGGGGACAUGGG&CUCAUGUU----UCUAUAAUCAAUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN13873_c0_g1_3510_TPlot.pdf
TRINITY_DN13873_c0_g1:539	si_s76	TRINITY_DN13873_c0_g1	528	548	539	-23.60	-16.00	0.677966101694915	10.5	4-18,545-531	1-3,548-546[UP5];19-21,530-528[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAAAAAGGGGAGAAGAAAUAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13873_c0_g1_539_TPlot.pdf
TRINITY_DN13873_c0_g1:542	si_s73	TRINITY_DN13873_c0_g1	531	555	542	-24.00	-16.14	0.6725	17	1-3,555-553;7-21,545-531	4-6,552-546[AILt]	(((((((((((((((.......(((&)))----...)))))))))))))))	AAAGGGGAGAAGAAAUAAAAGGGGA&UCU----AUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13873_c0_g1_542_TPlot.pdf
TRINITY_DN13873_c0_g1:544	si_s71	TRINITY_DN13873_c0_g1	533	557	544	-25.70	-17.74	0.690272373540856	17	1-5,557-553;9-21,545-533	6-8,552-546[AILt]	(((((((((((((.......(((((&)))))----...)))))))))))))	AGGGGAGAAGAAAUAAAAGGGGAAG&CUUCU----AUUUUUUUUCUUUCCU	2	0.999999999998634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13873_c0_g1_544_TPlot.pdf
TRINITY_DN13873_c0_g1:545	si_s70	TRINITY_DN13873_c0_g1	534	558	545	-25.80	-18.24	0.706976744186046	16.5	1-6,558-553;10-21,545-534	7-9,552-546[AILt]	((((((((((((.......((((((&))))))----...))))))))))))	GGGGAGAAGAAAUAAAAGGGGAAGU&ACUUCU----AUUUUUUUUCUUUCC	2	0.999999200481274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13873_c0_g1_545_TPlot.pdf
TRINITY_DN13873_c0_g1:613	si_a777	TRINITY_DN13873_c0_g1	602	622	613	-27.00	-18.10	0.67037037037037	10	4-6,619-617;9-21,614-602	1-3,622-620[UP5];7-8,616-615[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	AGAGAUAGAAGAGGAGAAGGG&UGAUUCAACUCUUCUAUUUUU	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN13873_c0_g1_613_TPlot.pdf
TRINITY_DN13873_c0_g1:655	si_a784	TRINITY_DN13873_c0_g1	644	663	655	-24.70	-16.30	0.659919028340081	10	2-8,662-656;10-18,655-647	1-1,663-663[UP5];9-9,x-x[BULq];19-21,646-644[UP3]	...(((((((((-(((((((.&.))))))).)))))))))...	GCUGUAGGAGGA-AGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN13873_c0_g1_655_TPlot.pdf
TRINITY_DN13873_c0_g1:656	si_a783	TRINITY_DN13873_c0_g1	645	664	656	-24.70	-16.30	0.659919028340081	10.5	3-9,662-656;11-19,655-647	1-2,664-663[UP5];10-10,x-x[BULq];20-21,646-645[UP3]	..(((((((((-(((((((..&..))))))).)))))))))..	CUGUAGGAGGA-AGAGGAGGC&AACUCUUCUAUUUUUCUAUUU	2	0.999999999999071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN13873_c0_g1_656_TPlot.pdf
TRINITY_DN13873_c0_g1:661	si_s69	TRINITY_DN13873_c0_g1	650	673	661	-23.40	-15.72	0.671794871794872	15.5	1-6,673-668;9-21,662-650	7-8,667-663[AILt]	(((((((((((((.....((((((&))))))---..)))))))))))))	GGAGGAAGAGGAGGCGAUGGAGUU&AACUUC---UAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN13873_c0_g1_661_TPlot.pdf
TRINITY_DN13873_c0_g1:775	si_s808	TRINITY_DN13873_c0_g1	764	790	775	-28.60	-19.60	0.685314685314685	18	1-7,790-784;8-19,777-766	x-x,783-778[BULt];20-21,765-764[UP3]	..((((((((((((......(((((((&)))))))------))))))))))))..	ACAGGAAGAGGUGAAGGCGUCGGAGGU&AUCUUCG------UUACCUUUUCUUAA	4	0.999999568533045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN13873_c0_g1_775_TPlot.pdf
TRINITY_DN13873_c0_g1:833	si_s71	TRINITY_DN13873_c0_g1	821	842	833	-25.70	-18.20	0.708171206225681	7.5	2-7,841-836;9-17,834-826;18-21,824-821	1-1,842-842[UP5];8-8,835-835[SIL];x-x,825-825[BULt]	((((.(((((((((.((((((.&.)))))).)))))))))-))))	AGGAGGAGAAGAGAUGUAGAAA&CUUCUAUUUUUUUUCUU-UCCU	4	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13873_c0_g1_833_TPlot.pdf
TRINITY_DN13874_c0_g1:825	si_s624	TRINITY_DN13874_c0_g1	814	836	825	-37.90	-25.60	0.675461741424802	10.5	1-4,836-833;5-18,830-817;20-21,815-814	x-x,832-831[BULt];19-19,816-816[SIL]	((.((((((((((((((..((((&))))--)))))))))))))).))	GUGUGCGAGGGGGUCGUGGUUGG&CCAA--GCGAUCUUUUCGUAGGC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN13874_c0_g1_825_TPlot.pdf
TRINITY_DN13874_c0_g1:862	si_s810	TRINITY_DN13874_c0_g1	851	875	862	-27.90	-19.20	0.688172043010753	17.5	1-6,875-870;7-17,865-855	x-x,869-866[BULt];18-21,854-851[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	GGCAGGGAGGAGGUGUUCGGCGAGG&CUUCGU----UACCUUUUCUUAAUA	3	0.999974255652604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN13874_c0_g1_862_TPlot.pdf
TRINITY_DN13874_c0_g1:863	si_s809	TRINITY_DN13874_c0_g1	852	876	863	-28.50	-19.40	0.680701754385965	16.5	1-7,876-870;8-18,865-855	x-x,869-866[BULt];19-21,854-852[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	GCAGGGAGGAGGUGUUCGGCGAGGG&UCUUCGU----UACCUUUUCUUAAU	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN13874_c0_g1_863_TPlot.pdf
TRINITY_DN13874_c0_g1:871	si_s805	TRINITY_DN13874_c0_g1	856	880	871	-28.60	-18.60	0.65034965034965	20.5	5-11,876-870;12-21,865-856	1-4,880-877[UP5];x-x,869-866[BULt]	((((((((((....(((((((....&....)))))))----))))))))))	GGAGGAGGUGUUCGGCGAGGGGAGG&UUUAUCUUCGU----UACCUUUUCU	4	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN13874_c0_g1_871_TPlot.pdf
TRINITY_DN13874_c0_g1:877	si_s94	TRINITY_DN13874_c0_g1	866	886	877	-35.50	-23.50	0.661971830985915	9.5	1-10,886-877;12-16,875-871	11-11,876-876[SIL];17-21,870-866[UP3]	.....(((((.((((((((((&)))))))))).))))).....	UUCGGCGAGGGGAGGAAGGAG&CUUCUUCUUCGCUUCGGAUUG	3	0.99999997930005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN13874_c0_g1_877_TPlot.pdf
TRINITY_DN13874_c0_g1:878	si_s93	TRINITY_DN13874_c0_g1	867	887	878	-34.80	-25.10	0.721264367816092	8.5	1-11,887-877;13-17,875-871	12-12,876-876[SIL];18-21,870-867[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UCGGCGAGGGGAGGAAGGAGA&UCUUCUUCUUCGCUUCGGAUU	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN13874_c0_g1_878_TPlot.pdf
TRINITY_DN13874_c0_g1:879	si_s85	TRINITY_DN13874_c0_g1	870	888	879	-33.80	-26.50	0.784023668639053	5.5	1-13,888-876;16-21,875-870	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	GCGAGG--GGAGGAAGGAGAG&CUUUCCUUUCUUCUUCUUCGC	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN13874_c0_g1_879_TPlot.pdf
TRINITY_DN13874_c0_g1:880	si_s91	TRINITY_DN13874_c0_g1	869	889	880	-34.70	-27.00	0.778097982708934	6.5	1-13,889-877;15-19,875-871	14-14,876-876[SIL];20-21,870-869[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	GGCGAGGGGAGGAAGGAGAGA&UUUCUUCUUCUUCGCUUCGGA	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN13874_c0_g1_880_TPlot.pdf
TRINITY_DN13874_c0_g1:881	si_s79	TRINITY_DN13874_c0_g1	870	890	881	-26.20	-24.30	0.927480916030534	6.5	1-19,890-872	20-21,871-870[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	GCGAGGGGAGGAAGGAGAGAA&UUUUUUCUUUCCUUUCUUCUU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN13874_c0_g1_881_TPlot.pdf
TRINITY_DN13874_c0_g1:882	si_s78	TRINITY_DN13874_c0_g1	871	891	882	-26.20	-24.50	0.935114503816794	6.5	2-20,890-872	1-1,891-891[UP5];21-21,871-871[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CGAGGGGAGGAAGGAGAGAAU&UUUUUUUCUUUCCUUUCUUCU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN13874_c0_g1_882_TPlot.pdf
TRINITY_DN13874_c0_g1:885	si_s73	TRINITY_DN13874_c0_g1	872	894	885	-24.00	-19.20	0.8	10.5	1-11,894-884;12-21,881-872	x-x,883-882[BULt]	((((((((((..(((((((((((&)))))))))))--))))))))))	GAGGGGAGGAAGGAGAGAAUGGG&UCUAUUUUUUU--UCUUUCCUUU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN13874_c0_g1_885_TPlot.pdf
TRINITY_DN13874_c0_g1:886	si_s74	TRINITY_DN13874_c0_g1	875	893	886	-25.00	-19.90	0.796	8.5	1-8,893-886;11-21,885-875	9-10,x-x[BULq]	(((((((((((--((((((((&))))))))..)))))))))))	GGGAGGAAGGA--GAGAAUGG&CUAUUUUUUUUCUUUCCUUUC	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN13874_c0_g1_886_TPlot.pdf
TRINITY_DN13874_c0_g1:887	si_s71	TRINITY_DN13874_c0_g1	874	896	887	-25.70	-18.10	0.704280155642023	10	2-13,895-884;14-21,881-874	1-1,896-896[UP5];x-x,883-882[BULt]	((((((((..((((((((((((.&.))))))))))))--))))))))	GGGGAGGAAGGAGAGAAUGGGGA&CUUCUAUUUUUUU--UCUUUCCU	2	0.99999999930268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN13874_c0_g1_887_TPlot.pdf
TRINITY_DN13874_c0_g1:888	si_s76	TRINITY_DN13874_c0_g1	877	897	888	-23.60	-20.90	0.885593220338983	8	1-6,897-892;8-21,890-877	7-7,891-891[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	GAGGAAGGAGAGAAUGGGGAU&AUUUUUUUUCUUUCCUUUCUU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13874_c0_g1_888_TPlot.pdf
TRINITY_DN13874_c0_g1:889	si_s75	TRINITY_DN13874_c0_g1	878	898	889	-24.00	-20.40	0.85	7.5	1-7,898-892;9-21,890-878	8-8,891-891[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	AGGAAGGAGAGAAUGGGGAUG&UAUUUUUUUUCUUUCCUUUCU	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13874_c0_g1_889_TPlot.pdf
TRINITY_DN13874_c0_g1:890	si_s70	TRINITY_DN13874_c0_g1	879	899	890	-25.80	-17.38	0.673643410852713	11	1-2,899-898;4-6,896-894;10-21,890-879	3-3,897-897[SIL];7-9,893-891[SIL]	((((((((((((...(((.((&)).)))...))))))))))))	GGAAGGAGAGAAUGGGGAUGU&ACUUCUAUUUUUUUUCUUUCC	0	0.681674109526864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN13874_c0_g1_890_TPlot.pdf
TRINITY_DN13878_c0_g1:205	si_s292	TRINITY_DN13878_c0_g1	192	214	205	-36.60	-24.60	0.672131147540984	7.5	1-10,214-205;11-18,201-194;20-21,193-192	x-x,204-202[BULt];19-19,x-x[BULq]	((-((((((((...((((((((((&))))))))))---)))))))).))	UC-UAAUUCCAAAGAUCGACUAGG&CCUAGUCGAU---UGGAAUUGCGA	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN13878_c0_g1_205_TPlot.pdf
TRINITY_DN13878_c1_g1:440	si_a870	TRINITY_DN13878_c1_g1	427	449	440	-24.80	-18.60	0.75	9	1-11,449-439;12-19,436-429	x-x,438-437[BULt];20-21,428-427[UP3]	..((((((((..(((((((((((&)))))))))))--))))))))..	CAUGCAGCUGUAAAUCUUUAGUG&UAUUAAAGAUU--UAGUUGCAAU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN13878_c1_g1_440_TPlot.pdf
TRINITY_DN13878_c1_g1:441	si_a869	TRINITY_DN13878_c1_g1	428	450	441	-24.80	-20.40	0.82258064516129	8	1-12,450-439;13-20,436-429	x-x,438-437[BULt];21-21,428-428[UP3]	.((((((((..((((((((((((&))))))))))))--)))))))).	AUGCAGCUGUAAAUCUUUAGUGA&UUAUUAAAGAUU--UAGUUGCAA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN13878_c1_g1_441_TPlot.pdf
TRINITY_DN13878_c1_g1:443	si_a867	TRINITY_DN13878_c1_g1	430	452	443	-24.10	-18.80	0.780082987551867	8	3-14,450-439;15-21,436-430	1-2,452-451[UP5];x-x,438-437[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	GCAGCUGUAAAUCUUUAGUGAGA&AAUUAUUAAAGAUU--UAGUUGC	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN13878_c1_g1_443_TPlot.pdf
TRINITY_DN13878_c1_g1:444	si_a866	TRINITY_DN13878_c1_g1	431	453	444	-23.30	-15.70	0.67381974248927	10	4-15,450-439;16-21,436-431	1-3,453-451[UP5];x-x,438-437[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	CAGCUGUAAAUCUUUAGUGAGAA&CAAUUAUUAAAGAUU--UAGUUG	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN13878_c1_g1_444_TPlot.pdf
TRINITY_DN13879_c0_g1:454	si_a466	TRINITY_DN13879_c0_g1	443	463	454	-21.50	-14.30	0.665116279069767	6	1-17,463-447	18-21,446-443[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUACUGGUUAUAUAUUAUAUA&UAUAUAAUAUGUAAUUAUUGU	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN13879_c0_g1_454_TPlot.pdf
TRINITY_DN1387_c0_g1:6638	si_a462	TRINITY_DN1387_c0_g1	6627	6647	6638	-21.20	-15.30	0.721698113207547	8	1-3,6647-6645;5-17,6643-6631	4-4,6644-6644[SIL];18-21,6630-6627[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AAAGUACAUAUUAUGUAAGAC&GUUAUAUAUAAUAUGUAAUUA	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN1387_c0_g1_6638_TPlot.pdf
TRINITY_DN1387_c0_g1:6639	si_a461	TRINITY_DN1387_c0_g1	6628	6648	6639	-21.50	-16.10	0.748837209302326	7	1-4,6648-6645;6-18,6643-6631	5-5,6644-6644[SIL];19-21,6630-6628[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AAGUACAUAUUAUGUAAGACA&UGUUAUAUAUAAUAUGUAAUU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN1387_c0_g1_6639_TPlot.pdf
TRINITY_DN1387_c0_g1:6640	si_a460	TRINITY_DN1387_c0_g1	6629	6649	6640	-21.60	-16.20	0.75	7	2-5,6648-6645;7-19,6643-6631	1-1,6649-6649[UP5];6-6,6644-6644[SIL];20-21,6630-6629[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AGUACAUAUUAUGUAAGACAC&UUGUUAUAUAUAAUAUGUAAU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN1387_c0_g1_6640_TPlot.pdf
TRINITY_DN1387_c0_g1:6641	si_a459	TRINITY_DN1387_c0_g1	6630	6650	6641	-23.20	-16.20	0.698275862068966	8	3-6,6648-6645;8-20,6643-6631	1-2,6650-6649[UP5];7-7,6644-6644[SIL];21-21,6630-6630[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	GUACAUAUUAUGUAAGACACA&GUUGUUAUAUAUAAUAUGUAA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN1387_c0_g1_6641_TPlot.pdf
TRINITY_DN1387_c0_g1:6642	si_a458	TRINITY_DN1387_c0_g1	6631	6650	6642	-23.80	-16.60	0.697478991596639	6	1-3,6650-6648;5-7,6647-6645;9-21,6643-6631	4-4,x-x[BULq];8-8,6644-6644[SIL]	(((((((((((((.(((-(((&))).))).)))))))))))))	UACAUAUUAUGUAAGAC-ACA&UGUUGUUAUAUAUAAUAUGUA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN1387_c0_g1_6642_TPlot.pdf
TRINITY_DN1387_c0_g1:6643	si_a457	TRINITY_DN1387_c0_g1	6632	6651	6643	-23.50	-16.10	0.685106382978724	6	1-4,6651-6648;6-8,6647-6645;10-21,6643-6632	5-5,x-x[BULq];9-9,6644-6644[SIL]	((((((((((((.(((-((((&)))).))).))))))))))))	ACAUAUUAUGUAAGAC-ACAA&UUGUUGUUAUAUAUAAUAUGU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN1387_c0_g1_6643_TPlot.pdf
TRINITY_DN1387_c2_g1:543	si_s316	TRINITY_DN1387_c2_g1	532	552	543	-31.50	-21.20	0.673015873015873	7	1-13,552-540;15-15,538-538;18-19,535-534	14-14,539-539[SIL];16-17,537-536[SIL];20-21,533-532[UP3]	..((..(.(((((((((((((&))))))))))))).)..))..	GAUGGCGGAAGAAGGACGGAG&UUCUGUCCUUCUUGUUACAAA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1387_c2_g1_543_TPlot.pdf
TRINITY_DN13888_c0_g3:611	si_a76	TRINITY_DN13888_c0_g3	600	620	611	-21.20	-13.80	0.650943396226415	5	2-4,619-617;6-20,615-601	1-1,620-620[UP5];5-5,616-616[SIL];21-21,600-600[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	GUUAAUAAUGAAAAAUUAUUA&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999999955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN13888_c0_g3_611_TPlot.pdf
TRINITY_DN13888_c3_g1:223	si_a458	TRINITY_DN13888_c3_g1	212	233	223	-23.80	-16.90	0.710084033613445	8	3-7,231-227;8-21,225-212	1-2,233-232[UP5];x-x,226-226[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	UACAUAUUAUAUGUAAGCGAGU&UGUUGUU-AUAUAUAAUAUGUA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN13888_c3_g1_223_TPlot.pdf
TRINITY_DN13893_c0_g1:250	si_a307	TRINITY_DN13893_c0_g1	240	259	250	-33.00	-23.20	0.703030303030303	8.5	3-14,257-246;16-19,245-242	1-2,259-258[UP5];15-15,x-x[BULq];20-21,241-240[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	ACGGAU-GAUCCGAGCGGAGA&GAUUCGCUUGGAUUUAUCCAU	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN13893_c0_g1_250_TPlot.pdf
TRINITY_DN13894_c0_g1:495	si_a73	TRINITY_DN13894_c0_g1	479	504	495	-21.90	-14.80	0.675799086757991	7.5	1-13,504-492;14-21,486-479	x-x,491-487[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	AAUAGUGAUCCUGAAAAUAAUUUGGA&UUCAAAUUGUUUU-----UCAUUAUU	4	0.999999999672527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN13894_c0_g1_495_TPlot.pdf
TRINITY_DN13895_c0_g1:157	si_s76	TRINITY_DN13895_c0_g1	146	166	157	-23.60	-15.40	0.652542372881356	9	1-9,166-158;11-19,156-148	10-10,157-157[SIL];20-21,147-146[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UCGAAAGGAGGCAAAAAGGGU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN13895_c0_g1_157_TPlot.pdf
TRINITY_DN13895_c0_g1:158	si_s75	TRINITY_DN13895_c0_g1	147	167	158	-24.00	-16.20	0.675	8	1-10,167-158;12-20,156-148	11-11,157-157[SIL];21-21,147-147[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	CGAAAGGAGGCAAAAAGGGUG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN13895_c0_g1_158_TPlot.pdf
TRINITY_DN13895_c0_g1:656	si_s42	TRINITY_DN13895_c0_g1	645	663	656	-24.90	-16.86	0.67710843373494	10.5	1-6,663-658;12-21,654-645	7-11,657-655[AILq]	((((((((((...--((((((&)))))).....))))))))))	UUGAGAUCCAUGG--UAAAGA&UCUUUAAUAAUUGGAUUUCAA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN13895_c0_g1_656_TPlot.pdf
TRINITY_DN13895_c0_g1:912	si_s894	TRINITY_DN13895_c0_g1	901	921	912	-29.10	-19.20	0.65979381443299	11	2-13,920-909	1-1,921-921[UP5];14-21,908-901[UP3]	........((((((((((((.&.))))))))))))........	AGGAUAUCGAGAAGGCCUGUC&AAUAGGCUUUCUCUUCAAUUU	3	0.999999997811836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN13895_c0_g1_912_TPlot.pdf
TRINITY_DN13895_c0_g1:913	si_s893	TRINITY_DN13895_c0_g1	902	922	913	-29.10	-19.20	0.65979381443299	12	3-14,920-909	1-2,922-921[UP5];15-21,908-902[UP3]	.......((((((((((((..&..)))))))))))).......	GGAUAUCGAGAAGGCCUGUCA&AAAUAGGCUUUCUCUUCAAUU	3	0.999999973068369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN13895_c0_g1_913_TPlot.pdf
TRINITY_DN13895_c0_g1:914	si_s892	TRINITY_DN13895_c0_g1	903	923	914	-29.50	-19.20	0.650847457627119	13	4-15,920-909	1-3,923-921[UP5];16-21,908-903[UP3]	......((((((((((((...&...))))))))))))......	GAUAUCGAGAAGGCCUGUCAG&UAAAUAGGCUUUCUCUUCAAU	3	0.999999949556134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN13895_c0_g1_914_TPlot.pdf
TRINITY_DN13895_c0_g1:917	si_s889	TRINITY_DN13895_c0_g1	906	926	917	-28.80	-19.20	0.666666666666667	15.5	7-18,920-909	1-6,926-921[UP5];19-21,908-906[UP3]	...((((((((((((......&......))))))))))))...	AUCGAGAAGGCCUGUCAGGGC&AAAUAAAUAGGCUUUCUCUUC	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN13895_c0_g1_917_TPlot.pdf
TRINITY_DN13895_c0_g1:918	si_s888	TRINITY_DN13895_c0_g1	907	927	918	-26.80	-19.20	0.716417910447761	16.5	8-19,920-909	1-7,927-921[UP5];20-21,908-907[UP3]	..((((((((((((.......&.......))))))))))))..	UCGAGAAGGCCUGUCAGGGCA&AAAAUAAAUAGGCUUUCUCUU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN13895_c0_g1_918_TPlot.pdf
TRINITY_DN13895_c0_g1:919	si_s887	TRINITY_DN13895_c0_g1	908	928	919	-26.80	-19.20	0.716417910447761	17.5	9-20,920-909	1-8,928-921[UP5];21-21,908-908[UP3]	.((((((((((((........&........)))))))))))).	CGAGAAGGCCUGUCAGGGCAU&AAAAAUAAAUAGGCUUUCUCU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN13895_c0_g1_919_TPlot.pdf
TRINITY_DN13895_c0_g1:920	si_s886	TRINITY_DN13895_c0_g1	909	929	920	-26.50	-18.90	0.713207547169811	18.5	10-21,920-909	1-9,929-921[UP5]	((((((((((((.........&.........))))))))))))	GAGAAGGCCUGUCAGGGCAUC&UAAAAAUAAAUAGGCUUUCUC	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN13895_c0_g1_920_TPlot.pdf
TRINITY_DN13895_c0_g1:931	si_s169	TRINITY_DN13895_c0_g1	921	939	931	-44.00	-29.00	0.659090909090909	8	1-2,939-938;4-9,936-931;12-19,930-923	3-3,937-937[SIL];10-11,x-x[BULq];20-21,922-921[UP3]	..((((((((--((((((.((&)).))))))..))))))))..	CAGGGCAUCU--ACCCCUUGC&GCCAGGGGUAAAGAUGCCCGA	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s169_TRINITY_DN13895_c0_g1_931_TPlot.pdf
TRINITY_DN13895_c0_g2:184	si_s192	TRINITY_DN13895_c0_g2	172	193	184	-28.00	-18.80	0.671428571428571	8	2-3,192-191;6-13,188-181;14-21,179-172	1-1,193-193[UP5];4-5,190-189[SIL];x-x,180-180[BULt]	((((((((.((((((((..((.&.))..))))))))-))))))))	GUACAUUCGCAAAGUGAAGGUA&AACGAUUAUUUUG-GAAUGUAC	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN13895_c0_g2_184_TPlot.pdf
TRINITY_DN1389_c0_g1:10558	si_a658	TRINITY_DN1389_c0_g1	10547	10568	10558	-33.40	-22.10	0.661676646706587	9	2-7,10567-10562;8-18,10560-10550	1-1,10568-10568[UP5];x-x,10561-10561[BULt];19-21,10549-10547[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	UGCCGAUGGGUAUUCUCCUGAA&AUCGGGA-AAUGCCUAUUGAUU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN1389_c0_g1_10558_TPlot.pdf
TRINITY_DN1389_c0_g1:10559	si_a657	TRINITY_DN1389_c0_g1	10548	10569	10559	-33.80	-22.10	0.653846153846154	10	3-8,10567-10562;9-19,10560-10550	1-2,10569-10568[UP5];x-x,10561-10561[BULt];20-21,10549-10548[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	GCCGAUGGGUAUUCUCCUGAAC&UAUCGGGA-AAUGCCUAUUGAU	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN1389_c0_g1_10559_TPlot.pdf
TRINITY_DN1389_c0_g1:10560	si_a656	TRINITY_DN1389_c0_g1	10549	10570	10560	-33.80	-22.10	0.653846153846154	10.5	4-9,10567-10562;10-20,10560-10550	1-3,10570-10568[UP5];x-x,10561-10561[BULt];21-21,10549-10549[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	CCGAUGGGUAUUCUCCUGAACC&AUAUCGGGA-AAUGCCUAUUGA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN1389_c0_g1_10560_TPlot.pdf
TRINITY_DN1389_c0_g1:11161	si_s308	TRINITY_DN1389_c0_g1	11149	11171	11161	-32.80	-21.60	0.658536585365854	10.5	1-4,11171-11168;7-12,11164-11159;13-19,11157-11151	5-6,11167-11165[AILt];x-x,11158-11158[BULt];20-21,11150-11149[UP3]	..(((((((.((((((...((((&))))-..))))))-)))))))..	UUGGAGGACGAGAAUUGCCCGCA&UGCG-AAAAUUCU-GUCCUUCUU	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN1389_c0_g1_11161_TPlot.pdf
TRINITY_DN1389_c0_g1:11163	si_s306	TRINITY_DN1389_c0_g1	11151	11173	11163	-32.30	-22.10	0.68421052631579	8.5	2-6,11172-11168;9-14,11164-11159;15-21,11157-11151	1-1,11173-11173[UP5];7-8,11167-11165[AILt];x-x,11158-11158[BULt]	(((((((.((((((...(((((.&.)))))-..))))))-)))))))	GGAGGACGAGAAUUGCCCGCAAG&AUUGCG-AAAAUUCU-GUCCUUC	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN1389_c0_g1_11163_TPlot.pdf
TRINITY_DN1389_c0_g1:11164	si_s305	TRINITY_DN1389_c0_g1	11152	11174	11164	-30.30	-20.00	0.66006600660066	10.5	3-7,11172-11168;10-15,11164-11159;16-21,11157-11152	1-2,11174-11173[UP5];8-9,11167-11165[AILt];x-x,11158-11158[BULt]	((((((.((((((...(((((..&..)))))-..))))))-))))))	GAGGACGAGAAUUGCCCGCAAGA&AAUUGCG-AAAAUUCU-GUCCUU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN1389_c0_g1_11164_TPlot.pdf
TRINITY_DN1389_c0_g1:11391	si_a150	TRINITY_DN1389_c0_g1	11379	11400	11391	-29.90	-21.82	0.729765886287626	9	1-11,11400-11390;15-21,11385-11379	12-14,11389-11386[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	GAUUGACAUUGAAAACGACGGC&GUUGUUGUUUU-AAGGUCAAUC	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN1389_c0_g1_11391_TPlot.pdf
TRINITY_DN1389_c0_g1:11392	si_a149	TRINITY_DN1389_c0_g1	11380	11401	11392	-29.40	-21.22	0.721768707482993	8	1-12,11401-11390;16-21,11385-11380	13-15,11389-11386[AILt]	((((((....((((((((((((&))))))))))))-...))))))	AUUGACAUUGAAAACGACGGCG&CGUUGUUGUUUU-AAGGUCAAU	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1389_c0_g1_11392_TPlot.pdf
TRINITY_DN1389_c0_g1:11393	si_a148	TRINITY_DN1389_c0_g1	11381	11402	11393	-30.30	-20.22	0.667326732673267	7.5	1-13,11402-11390;17-21,11385-11381	14-16,11389-11386[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	UUGACAUUGAAAACGACGGCGG&UCGUUGUUGUUUU-AAGGUCAA	3	0.999992511716794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN1389_c0_g1_11393_TPlot.pdf
TRINITY_DN1389_c0_g1:1918	si_a785	TRINITY_DN1389_c0_g1	1904	1928	1918	-25.90	-17.02	0.657142857142857	11	1-9,1928-1920;10-15,1918-1913;18-21,1907-1904	x-x,1919-1919[BULt];16-17,1912-1908[AILt]	((((.....((((((.(((((((((&)))))))))-))))))---..))))	GAAGUACAGGGAAGAGGUGGAAGAG&CUCUUCUAU-UUUUCU---AUUUUC	2	0.999999999998312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1389_c0_g1_1918_TPlot.pdf
TRINITY_DN1389_c0_g1:1919	si_s69	TRINITY_DN1389_c0_g1	1908	1928	1919	-23.40	-16.30	0.696581196581197	11	3-18,1926-1911	1-2,1928-1927[UP5];19-21,1910-1908[UP3]	...((((((((((((((((..&..))))))))))))))))...	UACAGGGAAGAGGUGGAAGAG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1389_c0_g1_1919_TPlot.pdf
TRINITY_DN1389_c0_g1:1921	si_s808	TRINITY_DN1389_c0_g1	1910	1931	1921	-28.60	-20.00	0.699300699300699	10.5	1-6,1931-1926;8-19,1923-1912	7-7,1925-1924[AILt];20-21,1911-1910[UP3]	..((((((((((((..((((((&))))))-.))))))))))))..	CAGGGAAGAGGUGGAAGAGGAU&AUCUUC-GUUACCUUUUCUUAA	4	0.999964968133447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1389_c0_g1_1921_TPlot.pdf
TRINITY_DN1389_c0_g1:1922	si_s807	TRINITY_DN1389_c0_g1	1911	1932	1922	-28.90	-20.00	0.69204152249135	10.5	2-7,1931-1926;9-20,1923-1912	1-1,1932-1932[UP5];8-8,1925-1924[AILt];21-21,1911-1911[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	AGGGAAGAGGUGGAAGAGGAUC&UAUCUUC-GUUACCUUUUCUUA	3	0.999993368199119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1389_c0_g1_1922_TPlot.pdf
TRINITY_DN1389_c0_g1:1923	si_s806	TRINITY_DN1389_c0_g1	1912	1933	1923	-28.60	-19.50	0.681818181818182	11.5	3-8,1931-1926;10-21,1923-1912	1-2,1933-1932[UP5];9-9,1925-1924[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GGGAAGAGGUGGAAGAGGAUCU&UUAUCUUC-GUUACCUUUUCUU	2	0.999973593175076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1389_c0_g1_1923_TPlot.pdf
TRINITY_DN1389_c0_g1:1946	si_a76	TRINITY_DN1389_c0_g1	1935	1955	1946	-21.20	-14.10	0.665094339622642	10	2-15,1954-1941	1-1,1955-1955[UP5];16-21,1940-1935[UP3]	......((((((((((((((.&.))))))))))))))......	AAUUUGAAUGAAGAGCAGUUC&AAAUUGUUUUUCAUUAUUAAG	2	0.999999543342683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1389_c0_g1_1946_TPlot.pdf
TRINITY_DN1389_c0_g1:1949	si_a73	TRINITY_DN1389_c0_g1	1938	1963	1949	-21.90	-14.60	0.666666666666667	16	1-5,1963-1959;6-18,1953-1941	x-x,1958-1954[BULt];19-21,1940-1938[UP3]	...(((((((((((((.....(((((&)))))-----)))))))))))))...	UUGAAUGAAGAGCAGUUCUUGUUGAA&UUCAA-----AUUGUUUUUCAUUAUU	3	0.999999999970662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1389_c0_g1_1949_TPlot.pdf
TRINITY_DN1389_c0_g1:1950	si_a72	TRINITY_DN1389_c0_g1	1939	1964	1950	-21.90	-15.00	0.684931506849315	15	1-6,1964-1959;7-19,1953-1941	x-x,1958-1954[BULt];20-21,1940-1939[UP3]	..(((((((((((((.....((((((&))))))-----)))))))))))))..	UGAAUGAAGAGCAGUUCUUGUUGAAG&UUUCAA-----AUUGUUUUUCAUUAU	3	0.999999989808071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1389_c0_g1_1950_TPlot.pdf
TRINITY_DN1389_c0_g1:4233	si_a142	TRINITY_DN1389_c0_g1	4222	4242	4233	-23.50	-15.90	0.676595744680851	13	6-8,4237-4235;10-20,4233-4223	1-5,4242-4238[UP5];9-9,4234-4234[SIL];21-21,4222-4222[UP3]	.(((((((((((.(((.....&.....))).))))))))))).	AUGAGACAACAAGGAUCAUAG&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999984337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1389_c0_g1_4233_TPlot.pdf
TRINITY_DN1389_c0_g1:4234	si_a141	TRINITY_DN1389_c0_g1	4223	4243	4234	-23.80	-15.70	0.659663865546218	14	7-9,4237-4235;11-21,4233-4223	1-6,4243-4238[UP5];10-10,4234-4234[SIL]	(((((((((((.(((......&......))).)))))))))))	UGAGACAACAAGGAUCAUAGU&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999999445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1389_c0_g1_4234_TPlot.pdf
TRINITY_DN1389_c0_g1:4475	si_a141	TRINITY_DN1389_c0_g1	4463	4484	4475	-23.80	-17.20	0.722689075630252	11.5	4-12,4481-4473;13-20,4471-4464	1-3,4484-4482[UP5];x-x,4472-4472[BULt];21-21,4463-4463[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	GAGAGCAGCUGACGAUUGAAUA&UAAUUAAUCGUU-GUUGUUUUA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1389_c0_g1_4475_TPlot.pdf
TRINITY_DN1389_c0_g1:4588	si_s16	TRINITY_DN1389_c0_g1	4577	4597	4588	-25.60	-19.70	0.76953125	13	7-20,4591-4578	1-6,4597-4592[UP5];21-21,4577-4577[UP3]	.((((((((((((((......&......)))))))))))))).	AUGCAAUCAAUGUAGGGCCCA&UUAUUACUAUAUUGAUUGCAA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN1389_c0_g1_4588_TPlot.pdf
TRINITY_DN1389_c0_g1:7572	si_a198	TRINITY_DN1389_c0_g1	7563	7581	7572	-32.20	-22.14	0.687577639751553	10	1-10,7581-7572;17-21,7567-7563	11-16,7571-7568[AILq]	(((((....--((((((((((&))))))))))......)))))	GUCGAGUAG--AGUGGGCAGG&CCUGUUCACUAAUAAAUCGAC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a198_TRINITY_DN1389_c0_g1_7572_TPlot.pdf
TRINITY_DN1389_c0_g1:9080	si_a763	TRINITY_DN1389_c0_g1	9069	9089	9080	-28.80	-20.20	0.701388888888889	7.5	3-16,9087-9074;18-20,9072-9070	1-2,9089-9088[UP5];17-17,9073-9073[SIL];21-21,9069-9069[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	GGAAACGAUCAAAGACCUACG&UUUGGGUUUUUGAUUGAUUCA	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1389_c0_g1_9080_TPlot.pdf
TRINITY_DN1389_c0_g2:1251	si_s61	TRINITY_DN1389_c0_g2	1240	1260	1251	-26.50	-18.20	0.686792452830189	9	2-2,1259-1259;4-8,1257-1253;10-21,1251-1240	1-1,1260-1260[UP5];3-3,1258-1258[SIL];9-9,1252-1252[SIL]	((((((((((((.(((((.(.&.).))))).))))))))))))	GGAGAUGGAAGUGGCUGGGUC&AAGUUAGCAACUUCUAUUUUU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN1389_c0_g2_1251_TPlot.pdf
TRINITY_DN138_c0_g1:112	si_a476	TRINITY_DN138_c0_g1	101	121	112	-22.90	-15.70	0.685589519650655	6	1-17,121-105;19-19,103-103	18-18,104-104[SIL];20-21,102-101[UP3]	..(.(((((((((((((((((&))))))))))))))))).)..	ACUGUGUAUAAUAGUAAUUAU&GUAAUUAUUGUUAUAUAGAAU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN138_c0_g1_112_TPlot.pdf
TRINITY_DN1390_c0_g1:2880	si_a23	TRINITY_DN1390_c0_g1	2869	2889	2880	-22.80	-16.90	0.741228070175438	12	7-21,2883-2869	1-6,2889-2884[UP5]	(((((((((((((((......&......)))))))))))))))	UCUUGGGACUAAAAAAGGCAC&UAUUUAUUUUUAGUUCUAAGA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1390_c0_g1_2880_TPlot.pdf
TRINITY_DN13910_c0_g1:2132	si_a420	TRINITY_DN13910_c0_g1	2121	2141	2132	-25.00	-18.30	0.732	10	4-8,2138-2134;11-21,2131-2121	1-3,2141-2139[UP5];9-10,2133-2132[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GGAUCCUAUAUACGUUUAUGA&AUUUAAAUAAAUAUAGGAUCC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN13910_c0_g1_2132_TPlot.pdf
TRINITY_DN1391_c0_g1:1516	si_a497	TRINITY_DN1391_c0_g1	1501	1525	1516	-32.00	-21.20	0.6625	13.5	3-5,1523-1521;7-14,1519-1512;15-21,1507-1501	1-2,1525-1524[UP5];6-6,1520-1520[SIL];x-x,1511-1508[BULt]	(((((((....((((((((.(((..&..))).))))))))----)))))))	GAGGGAGCGCAGCGGAGGAGGACGA&AUGUCGUUUUUCGU----CUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1391_c0_g1_1516_TPlot.pdf
TRINITY_DN1391_c0_g1:1654	si_a399	TRINITY_DN1391_c0_g1	1643	1663	1654	-22.60	-14.90	0.65929203539823	14.5	6-18,1658-1646	1-5,1663-1659[UP5];19-21,1645-1643[UP3]	...(((((((((((((.....&.....)))))))))))))...	GACGGCAGAGCAAUUCGGCCA&AUAUAGAAUUGUUUUGUUUAU	2	0.999997889226889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1391_c0_g1_1654_TPlot.pdf
TRINITY_DN1391_c0_g1:1655	si_a398	TRINITY_DN1391_c0_g1	1644	1664	1655	-22.40	-14.90	0.665178571428572	15	7-19,1658-1646	1-6,1664-1659[UP5];20-21,1645-1644[UP3]	..(((((((((((((......&......)))))))))))))..	ACGGCAGAGCAAUUCGGCCAG&AAUAUAGAAUUGUUUUGUUUA	3	0.999999997035464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1391_c0_g1_1655_TPlot.pdf
TRINITY_DN1391_c0_g1:2792	si_s721	TRINITY_DN1391_c0_g1	2780	2801	2792	-32.90	-22.60	0.68693009118541	5.5	1-14,2801-2788;15-21,2786-2780	x-x,2787-2787[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	CGUCUGGUGUAAUGUUUUUUCU&GGGAAAGAUAUUAU-CUAGACG	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s721_TRINITY_DN1391_c0_g1_2792_TPlot.pdf
TRINITY_DN1391_c0_g1:2844	si_s296	TRINITY_DN1391_c0_g1	2833	2853	2844	-31.60	-22.60	0.715189873417722	7	1-14,2853-2840	15-21,2839-2833[UP3]	.......((((((((((((((&)))))))))))))).......	GCGGAGACAAUUCCAAUCGAC&GUCGAUUGGAAUUGCGAAAAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN1391_c0_g1_2844_TPlot.pdf
TRINITY_DN1391_c0_g1:2847	si_s293	TRINITY_DN1391_c0_g1	2836	2856	2847	-34.30	-22.60	0.658892128279884	9	4-17,2853-2840	1-3,2856-2854[UP5];18-21,2839-2836[UP3]	....((((((((((((((...&...))))))))))))))....	GAGACAAUUCCAAUCGACGUC&CUAGUCGAUUGGAAUUGCGAA	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN1391_c0_g1_2847_TPlot.pdf
TRINITY_DN1391_c0_g1:4032	si_a638	TRINITY_DN1391_c0_g1	4021	4041	4032	-24.40	-16.20	0.663934426229508	11.5	1-9,4041-4033;11-16,4031-4026	10-10,4032-4032[SIL];17-21,4025-4021[UP3]	.....((((((.(((((((((&))))))))).)))))).....	CCGCCUGCUCGCGGAGAUCGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN1391_c0_g1_4032_TPlot.pdf
TRINITY_DN1391_c0_g1:4573	si_s349	TRINITY_DN1391_c0_g1	4559	4582	4573	-31.60	-21.30	0.674050632911392	10.5	1-10,4582-4573;11-13,4568-4566;16-21,4564-4559	x-x,4572-4569[BULt];14-15,4565-4565[AILq]	((((((.-(((....((((((((((&))))))))))----)))..))))))	AAUCUGC-UCUCCACUUAUCUCCCC&GGGGAGAUAA----AGAAAUAGAUU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s349_TRINITY_DN1391_c0_g1_4573_TPlot.pdf
TRINITY_DN1391_c0_g1:4933	si_a766	TRINITY_DN1391_c0_g1	4922	4942	4933	-30.50	-20.60	0.675409836065574	7.5	1-12,4942-4931;14-18,4929-4925	13-13,4930-4930[SIL];19-21,4924-4922[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GACUGGAUGAAUCAGAGACUC&GGGUUUUUGAUUGAUUCAACU	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN1391_c0_g1_4933_TPlot.pdf
TRINITY_DN1391_c0_g1:4934	si_a765	TRINITY_DN1391_c0_g1	4923	4943	4934	-30.50	-21.60	0.708196721311475	6.5	1-13,4943-4931;15-19,4929-4925	14-14,4930-4930[SIL];20-21,4924-4923[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	ACUGGAUGAAUCAGAGACUCA&UGGGUUUUUGAUUGAUUCAAC	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN1391_c0_g1_4934_TPlot.pdf
TRINITY_DN1391_c0_g1:4935	si_a764	TRINITY_DN1391_c0_g1	4924	4944	4935	-28.90	-22.50	0.778546712802768	5.5	1-14,4944-4931;16-20,4929-4925	15-15,4930-4930[SIL];21-21,4924-4924[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CUGGAUGAAUCAGAGACUCAA&UUGGGUUUUUGAUUGAUUCAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1391_c0_g1_4935_TPlot.pdf
TRINITY_DN1391_c0_g1:4936	si_a763	TRINITY_DN1391_c0_g1	4925	4945	4936	-28.80	-23.10	0.802083333333333	4.5	1-15,4945-4931;17-21,4929-4925	16-16,4930-4930[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	UGGAUGAAUCAGAGACUCAAA&UUUGGGUUUUUGAUUGAUUCA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1391_c0_g1_4936_TPlot.pdf
TRINITY_DN1391_c0_g1:4937	si_a762	TRINITY_DN1391_c0_g1	4926	4946	4937	-29.70	-24.80	0.835016835016835	4.5	1-16,4946-4931;18-21,4929-4926	17-17,4930-4930[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GGAUGAAUCAGAGACUCAAAG&CUUUGGGUUUUUGAUUGAUUC	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1391_c0_g1_4937_TPlot.pdf
TRINITY_DN1391_c0_g1:4939	si_a760	TRINITY_DN1391_c0_g1	4928	4948	4939	-31.10	-23.80	0.765273311897106	4.5	2-18,4947-4931;20-21,4929-4928	1-1,4948-4948[UP5];19-19,4930-4930[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	AUGAAUCAGAGACUCAAAGGC&UCCUUUGGGUUUUUGAUUGAU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1391_c0_g1_4939_TPlot.pdf
TRINITY_DN1391_c0_g1:4941	si_a758	TRINITY_DN1391_c0_g1	4930	4950	4941	-34.00	-22.50	0.661764705882353	8	4-20,4947-4931	1-3,4950-4948[UP5];21-21,4930-4930[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GAAUCAGAGACUCAAAGGCAA&CCUCCUUUGGGUUUUUGAUUG	2	0.999918040760832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1391_c0_g1_4941_TPlot.pdf
TRINITY_DN1391_c0_g1:5066	si_a25	TRINITY_DN1391_c0_g1	5054	5075	5066	-26.50	-22.90	0.864150943396226	6	3-14,5073-5062;15-21,5060-5054	1-2,5075-5074[UP5];x-x,5061-5061[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	GGUCUUAUGAACUGAAGAUAUU&UUUAUUUUUAGUUC-UAAGACC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN1391_c0_g1_5066_TPlot.pdf
TRINITY_DN1391_c0_g1:5071	si_a20	TRINITY_DN1391_c0_g1	5060	5080	5071	-26.70	-18.28	0.684644194756554	10	1-4,5080-5077;8-19,5073-5062	5-7,5076-5074[SIL];20-21,5061-5060[UP3]	..((((((((((((...((((&))))...))))))))))))..	AUGAACUGAAGAUAUUGAGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1391_c0_g1_5071_TPlot.pdf
TRINITY_DN13930_c0_g1:858	si_s681	TRINITY_DN13930_c0_g1	847	870	858	-25.10	-16.70	0.665338645418327	10	1-8,870-863;9-17,859-851	x-x,862-860[BULt];18-21,850-847[UP3]	....(((((((((...((((((((&))))))))---)))))))))....	AUUAUAAACUCAUAUAGUUUCUAU&AUAGAAAC---AUGAGUUUAAUUA	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN13930_c0_g1_858_TPlot.pdf
TRINITY_DN13934_c0_g1:1674	si_a766	TRINITY_DN13934_c0_g1	1664	1683	1674	-30.50	-21.10	0.691803278688525	6.5	1-12,1683-1672;15-19,1670-1666	13-14,1671-1671[AILq];20-21,1665-1664[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	UUUUGAGA-GGUCAAAAACCC&GGGUUUUUGAUUGAUUCAACU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN13934_c0_g1_1674_TPlot.pdf
TRINITY_DN1393_c0_g1:1753	si_a75	TRINITY_DN1393_c0_g1	1742	1762	1753	-21.30	-14.80	0.694835680751174	9.5	1-4,1762-1759;7-19,1756-1744	5-6,1758-1757[SIL];20-21,1743-1742[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	GAGAUAAUGGAGAAUUUUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.999999458546671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1393_c0_g1_1753_TPlot.pdf
TRINITY_DN1393_c0_g1:1755	si_a73	TRINITY_DN1393_c0_g1	1744	1764	1755	-21.90	-16.00	0.730593607305936	8	1-6,1764-1759;9-21,1756-1744	7-8,1758-1757[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAUAAUGGAGAAUUUUUUGGA&UUCAAAUUGUUUUUCAUUAUU	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1393_c0_g1_1755_TPlot.pdf
TRINITY_DN1393_c0_g1:1756	si_a72	TRINITY_DN1393_c0_g1	1745	1765	1756	-21.90	-15.60	0.712328767123288	7	1-7,1765-1759;10-21,1756-1745	8-9,1758-1757[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AUAAUGGAGAAUUUUUUGGAA&UUUCAAAUUGUUUUUCAUUAU	2	0.999336734711078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1393_c0_g1_1756_TPlot.pdf
TRINITY_DN1393_c0_g1:287	si_s522	TRINITY_DN1393_c0_g1	275	296	287	-23.80	-16.90	0.710084033613445	6	1-12,296-285;15-20,281-276	13-14,284-282[AILt];21-21,275-275[UP3]	.((((((...((((((((((((&))))))))))))-..)))))).	UAAAAUGUUAUUCGAAUUGAGA&UCUUAAUUCGAA-AUCAUUUUU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN1393_c0_g1_287_TPlot.pdf
TRINITY_DN1394_c1_g3:12	si_a794	TRINITY_DN1394_c1_g3	1	28	12	-28.60	-19.30	0.674825174825175	21	4-8,25-21;9-20,13-2	1-3,28-26[UP5];x-x,20-14[BULt];21-21,1-1[UP3]	.((((((((((((.......(((((...&...)))))-------)))))))))))).	AUCGGAUUGGAAGGGUUGUUAUAGACAU&UUUUCUAU-------UUUCCAAUCCGAA	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1394_c1_g3_12_TPlot.pdf
TRINITY_DN13952_c0_g1:38	si_a471	TRINITY_DN13952_c0_g1	27	47	38	-21.10	-14.30	0.677725118483412	10.5	5-10,43-38;12-21,36-27	1-4,47-44[UP5];11-11,37-37[SIL]	((((((((((.((((((....&....)))))).))))))))))	AUAUGACAAUUGUUACAAAAA&AAUAUGUAAUUAUUGUUAUAU	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN13952_c0_g1_38_TPlot.pdf
TRINITY_DN1395_c1_g1:196	si_s482	TRINITY_DN1395_c1_g1	185	204	196	-21.20	-13.90	0.655660377358491	9.5	1-5,204-200;9-19,197-187	6-8,199-198[AILq];20-21,186-185[UP3]	..(((((((((((..-(((((&)))))...)))))))))))..	UGGUUUAAAUAGAGG-AGGAU&AUCCUAUAUUUAUUUAAAUAU	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN1395_c1_g1_196_TPlot.pdf
TRINITY_DN1395_c1_g1:209	si_a786	TRINITY_DN1395_c1_g1	198	218	209	-26.60	-17.40	0.654135338345865	8	1-9,218-210;11-12,208-207;14-21,205-198	10-10,209-209[SIL];13-13,206-206[SIL]	((((((((.((.(((((((((&))))))))).)).))))))))	GGAGGAUAUAAUGGUGGAGGA&UCUUCUAUUUUUCUAUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1395_c1_g1_209_TPlot.pdf
TRINITY_DN13963_c1_g1:315	si_a783	TRINITY_DN13963_c1_g1	304	324	315	-24.70	-16.60	0.672064777327935	11.5	4-17,321-308	1-3,324-322[UP5];18-21,307-304[UP3]	....((((((((((((((...&...))))))))))))))....	AAUAAGGAAGAUGGAAGAAAA&AACUCUUCUAUUUUUCUAUUU	2	0.999999997118386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN13963_c1_g1_315_TPlot.pdf
TRINITY_DN13964_c0_g1:188	si_a410	TRINITY_DN13964_c0_g1	178	197	188	-17.80	-12.10	0.679775280898876	3.5	1-14,197-184;17-21,182-178	15-16,183-183[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UUUGUA-AAAUGUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999974676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN13964_c0_g1_188_TPlot.pdf
TRINITY_DN13964_c0_g1:189	si_a409	TRINITY_DN13964_c0_g1	178	198	189	-19.50	-15.40	0.78974358974359	7	1-15,198-184	16-21,183-178[UP3]	......(((((((((((((((&)))))))))))))))......	UUUGUAAAAUGUAAACAAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN13964_c0_g1_189_TPlot.pdf
TRINITY_DN13964_c0_g1:194	si_a404	TRINITY_DN13964_c0_g1	183	203	194	-21.70	-17.30	0.797235023041475	6.5	4-20,200-184	1-3,203-201[UP5];21-21,183-183[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAAUGUAAACAAAACAAACC&GAAUUGUUUUGUUUAUAUUUA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN13964_c0_g1_194_TPlot.pdf
TRINITY_DN13964_c0_g1:196	si_a402	TRINITY_DN13964_c0_g1	185	205	196	-22.40	-16.10	0.71875	9.5	6-21,200-185	1-5,205-201[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUGUAAACAAAACAAACCAC&UAGAAUUGUUUUGUUUAUAUU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN13964_c0_g1_196_TPlot.pdf
TRINITY_DN13967_c0_g1:1057	si_a231	TRINITY_DN13967_c0_g1	1045	1066	1057	-26.90	-18.60	0.691449814126394	5.5	1-3,1066-1064;5-15,1062-1052;16-21,1050-1045	4-4,1063-1063[SIL];x-x,1051-1051[BULt]	((((((.(((((((((((.(((&))).)))))))))))-))))))	GUUGGAUUUGAUUGUAGAUACA&UGUUUCUAUAAUCAA-UUCGAU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN13967_c0_g1_1057_TPlot.pdf
TRINITY_DN13976_c0_g1:57	si_s895	TRINITY_DN13976_c0_g1	41	66	57	-31.10	-20.30	0.652733118971061	9	2-6,65-61;8-14,59-53;15-21,47-41	1-1,66-66[UP5];7-7,60-60[SIL];x-x,52-48[BULt]	(((((((.....(((((((.(((((.&.))))).)))))))-----)))))))	GAAAUUGUCGAUAAGAGAAUGCCUGA&AUAGGCUUUCUCUU-----CAAUUUC	4	0.999999747732611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN13976_c0_g1_57_TPlot.pdf
TRINITY_DN13979_c0_g1:418	si_s805	TRINITY_DN13979_c0_g1	407	427	418	-28.60	-18.70	0.653846153846154	7.5	1-12,427-416;14-19,414-409	13-13,415-415[SIL];20-21,408-407[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	CAAAGAGGAGAUGGAGAUGAA&UUUAUCUUCGUUACCUUUUCU	2	0.999999984726266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN13979_c0_g1_418_TPlot.pdf
TRINITY_DN13979_c0_g1:422	si_s801	TRINITY_DN13979_c0_g1	411	431	422	-28.20	-18.90	0.670212765957447	7.5	1-1,431-431;3-16,429-416;18-21,414-411	2-2,430-430[SIL];17-17,415-415[SIL]	((((.((((((((((((((.(&).)))))))))))))).))))	GAGGAGAUGGAGAUGAAGUCC&GUAUUUUAUCUUCGUUACCUU	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN13979_c0_g1_422_TPlot.pdf
TRINITY_DN1397_c0_g1:1088	si_s414	TRINITY_DN1397_c0_g1	1077	1097	1088	-24.90	-16.80	0.674698795180723	7	3-7,1095-1091;9-19,1089-1079	1-2,1097-1096[UP5];8-8,1090-1090[SIL];20-21,1078-1077[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	CGAUAUAGAAUAUAUCGUUGA&AAAACGACAUAUUCUAUAUAA	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN1397_c0_g1_1088_TPlot.pdf
TRINITY_DN1397_c0_g1:1089	si_s413	TRINITY_DN1397_c0_g1	1078	1098	1089	-24.80	-16.80	0.67741935483871	8	4-8,1095-1091;10-20,1089-1079	1-3,1098-1096[UP5];9-9,1090-1090[SIL];21-21,1078-1078[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	GAUAUAGAAUAUAUCGUUGAC&AAAAACGACAUAUUCUAUAUA	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN1397_c0_g1_1089_TPlot.pdf
TRINITY_DN1397_c0_g1:1108	si_a326	TRINITY_DN1397_c0_g1	1096	1118	1108	-26.20	-17.50	0.66793893129771	8.5	2-8,1117-1111;9-14,1109-1104;15-21,1102-1096	1-1,1118-1118[UP5];x-x,1110-1110[BULt];x-x,1103-1103[BULt]	(((((((.((((((.(((((((.&.)))))))-))))))-)))))))	GACGAGGCGGUAAAUGAGGUCAA&AUGAUUUU-UUUAUU-CCUUGUC	3	0.999999995464925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1397_c0_g1_1108_TPlot.pdf
TRINITY_DN1397_c0_g1:1723	si_a20	TRINITY_DN1397_c0_g1	1712	1738	1723	-26.70	-17.90	0.670411985018727	17	1-4,1738-1735;6-9,1733-1730;10-21,1723-1712	5-5,1734-1734[SIL];x-x,1729-1724[BULt]	((((((((((((......((((.((((&)))).))))------))))))))))))	UAGAGCUGAGAGACGCCCUAAAGAGGC&GCCUAUUUA------UUUUUAGUUCUA	2	0.999661310754408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1397_c0_g1_1723_TPlot.pdf
TRINITY_DN1397_c0_g1:1836	si_s88	TRINITY_DN1397_c0_g1	1825	1846	1836	-34.80	-23.10	0.663793103448276	7	2-7,1845-1840;8-13,1838-1833;16-21,1830-1825	1-1,1846-1846[UP5];x-x,1839-1839[BULt];14-15,1832-1831[SIL]	((((((..((((((.((((((.&.))))))-))))))..))))))	GAGGUGUUGGAGAACGAAAGGU&UCCUUUC-UUCUUCUUCGCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1397_c0_g1_1836_TPlot.pdf
TRINITY_DN1397_c0_g1:1889	si_a638	TRINITY_DN1397_c0_g1	1878	1898	1889	-24.40	-16.60	0.680327868852459	9	1-15,1898-1884	16-21,1883-1878[UP3]	......(((((((((((((((&)))))))))))))))......	CGGGCGACUUAAAGGAAUCGA&UCGAUUUUUUUGAGUAAUAUA	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN1397_c0_g1_1889_TPlot.pdf
TRINITY_DN1397_c0_g1:1890	si_a637	TRINITY_DN1397_c0_g1	1879	1899	1890	-25.80	-17.90	0.693798449612403	8	1-16,1899-1884	17-21,1883-1879[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGGCGACUUAAAGGAAUCGAU&GUCGAUUUUUUUGAGUAAUAU	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN1397_c0_g1_1890_TPlot.pdf
TRINITY_DN1397_c0_g1:1891	si_a636	TRINITY_DN1397_c0_g1	1880	1900	1891	-26.30	-18.20	0.692015209125475	8.5	2-17,1899-1884	1-1,1900-1900[UP5];18-21,1883-1880[UP3]	....((((((((((((((((.&.))))))))))))))))....	GGCGACUUAAAGGAAUCGAUG&UGUCGAUUUUUUUGAGUAAUA	3	0.999948760723328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN1397_c0_g1_1891_TPlot.pdf
TRINITY_DN1397_c0_g1:1892	si_a635	TRINITY_DN1397_c0_g1	1881	1901	1892	-26.10	-18.20	0.697318007662835	9.5	3-18,1899-1884	1-2,1901-1900[UP5];19-21,1883-1881[UP3]	...((((((((((((((((..&..))))))))))))))))...	GCGACUUAAAGGAAUCGAUGA&AUGUCGAUUUUUUUGAGUAAU	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1397_c0_g1_1892_TPlot.pdf
TRINITY_DN1397_c0_g1:1893	si_a634	TRINITY_DN1397_c0_g1	1882	1902	1893	-26.40	-18.20	0.689393939393939	10.5	4-19,1899-1884	1-3,1902-1900[UP5];20-21,1883-1882[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGACUUAAAGGAAUCGAUGAA&UAUGUCGAUUUUUUUGAGUAA	2	0.998764189281505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1397_c0_g1_1893_TPlot.pdf
TRINITY_DN1397_c0_g1:1895	si_a632	TRINITY_DN1397_c0_g1	1884	1904	1895	-26.10	-17.80	0.681992337164751	11.5	6-21,1899-1884	1-5,1904-1900[UP5]	((((((((((((((((.....&.....))))))))))))))))	ACUUAAAGGAAUCGAUGAAGC&AUUAUGUCGAUUUUUUUGAGU	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1397_c0_g1_1895_TPlot.pdf
TRINITY_DN1397_c0_g1:2223	si_s206	TRINITY_DN1397_c0_g1	2212	2232	2223	-33.00	-21.70	0.657575757575758	8	1-6,2232-2227;8-14,2225-2219;16-19,2217-2214	7-7,2226-2226[SIL];15-15,2218-2218[SIL];20-21,2213-2212[UP3]	..((((.(((((((.((((((&)))))).))))))).))))..	GCCGAGGGCAACUGUUGCGUU&AAUGUACCAGUUGUGUUCGAA	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN1397_c0_g1_2223_TPlot.pdf
TRINITY_DN1397_c0_g1:354	si_s559	TRINITY_DN1397_c0_g1	343	363	354	-27.80	-20.40	0.733812949640288	6	3-17,361-347;20-21,344-343	1-2,363-362[UP5];18-19,346-345[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	CUCUUCCCGAAAAUGUUAAGA&AAUUAAUAUUUUCGGGACAAG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN1397_c0_g1_354_TPlot.pdf
TRINITY_DN1397_c0_g1:357	si_s556	TRINITY_DN1397_c0_g1	346	366	357	-28.50	-19.50	0.684210526315789	11	6-20,361-347	1-5,366-362[UP5];21-21,346-346[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUCCCGAAAAUGUUAAGAAUC&UAGAAUUAAUAUUUUCGGGAC	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN1397_c0_g1_357_TPlot.pdf
TRINITY_DN1397_c0_g1:387	si_a324	TRINITY_DN1397_c0_g1	370	396	387	-27.50	-18.40	0.669090909090909	15	1-12,396-385;13-20,378-371	x-x,384-379[BULt];21-21,370-370[UP3]	.((((((((......((((((((((((&))))))))))))------)))))))).	AGAGGAGUACAACAUAAAAAAUUAUGG&CCAUGAUUUUUU------UAUUCCUUG	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN1397_c0_g1_387_TPlot.pdf
TRINITY_DN1397_c0_g1:390	si_a321	TRINITY_DN1397_c0_g1	373	399	390	-26.70	-17.60	0.659176029962547	10.5	3-15,397-385;16-21,378-373	1-2,399-398[UP5];x-x,384-379[BULt]	((((((......(((((((((((((..&..)))))))))))))------))))))	GGAGUACAACAUAAAAAAUUAUGGAAA&UAUCCAUGAUUUUUU------UAUUCC	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1397_c0_g1_390_TPlot.pdf
TRINITY_DN1397_c0_g1:629	si_s708	TRINITY_DN1397_c0_g1	619	638	629	-31.90	-21.20	0.664576802507837	6.5	1-12,638-627;14-17,626-623;20-20,620-620	13-13,x-x[BULq];18-19,622-621[SIL];21-21,619-619[UP3]	.(..((((-((((((((((((&)))))))))))).))))..).	GCGGUCCC-GUUCACUGAUGG&UUAUUAGUGAACAGGGAAAGA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s708_TRINITY_DN1397_c0_g1_629_TPlot.pdf
TRINITY_DN1397_c0_g1:630	si_s707	TRINITY_DN1397_c0_g1	620	639	630	-30.90	-21.00	0.679611650485437	7	2-13,638-627;15-18,626-623;21-21,620-620	1-1,639-639[UP5];14-14,x-x[BULq];19-20,622-621[SIL]	(..((((-((((((((((((.&.)))))))))))).))))..)	CGGUCCC-GUUCACUGAUGGU&UUUAUUAGUGAACAGGGAAAG	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s707_TRINITY_DN1397_c0_g1_630_TPlot.pdf
TRINITY_DN1397_c0_g1:631	si_s706	TRINITY_DN1397_c0_g1	621	640	631	-29.40	-20.70	0.704081632653061	9	3-14,638-627;16-19,626-623	1-2,640-639[UP5];15-15,x-x[BULq];20-21,622-621[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	GGUCCC-GUUCACUGAUGGUU&AUUUAUUAGUGAACAGGGAAA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN1397_c0_g1_631_TPlot.pdf
TRINITY_DN1397_c0_g1:632	si_s705	TRINITY_DN1397_c0_g1	622	641	632	-31.40	-20.70	0.659235668789809	10	4-15,638-627;17-20,626-623	1-3,641-639[UP5];16-16,x-x[BULq];21-21,622-622[UP3]	.((((-((((((((((((...&...)))))))))))).)))).	GUCCC-GUUCACUGAUGGUUU&GAUUUAUUAGUGAACAGGGAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN1397_c0_g1_632_TPlot.pdf
TRINITY_DN1397_c0_g1:633	si_s704	TRINITY_DN1397_c0_g1	623	642	633	-32.80	-23.00	0.701219512195122	7	1-3,642-640;5-16,638-627;18-21,626-623	4-4,639-639[SIL];17-17,x-x[BULq]	((((-((((((((((((.(((&))).)))))))))))).))))	UCCC-GUUCACUGAUGGUUUG&CGAUUUAUUAGUGAACAGGGA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s704_TRINITY_DN1397_c0_g1_633_TPlot.pdf
TRINITY_DN1397_c0_g1:638	si_s699	TRINITY_DN1397_c0_g1	627	647	638	-28.60	-19.70	0.688811188811189	9.5	3-8,645-640;10-21,638-627	1-2,647-646[UP5];9-9,639-639[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GUUCACUGAUGGUUUGAUUUC&UUAGUCGAUUUAUUAGUGAAC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN1397_c0_g1_638_TPlot.pdf
TRINITY_DN13982_c0_g1:12	si_s799	TRINITY_DN13982_c0_g1	1	21	12	-30.00	-19.70	0.656666666666667	5	1-11,21-11;13-20,9-2	12-12,10-10[SIL];21-21,1-1[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	UGUGACGAGCAUAAAAUAUGA&UCGUAUUUUAUCUUCGUUACC	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN13982_c0_g1_12_TPlot.pdf
TRINITY_DN1398_c0_g1:1027	si_a99	TRINITY_DN1398_c0_g1	1016	1034	1027	-28.20	-18.50	0.656028368794326	7.5	2-5,1033-1030;8-20,1029-1017	1-1,1034-1034[UP5];6-7,x-x[BULq];21-21,1016-1016[UP3]	.(((((((((((((--((((.&.))))..))))))))))))).	AUGUUUUAUCUUCG--GCCUC&AAGGUAACGAAGAUAAAAUAC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a99_TRINITY_DN1398_c0_g1_1027_TPlot.pdf
TRINITY_DN1398_c0_g1:2030	si_s198	TRINITY_DN1398_c0_g1	2019	2039	2030	-30.80	-20.50	0.665584415584416	5	2-14,2038-2026;16-19,2024-2021	1-1,2039-2039[UP5];15-15,2025-2025[SIL];20-21,2020-2019[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	CCACUGAUACAUUCCAAGAUU&UAUUUUGGAAUGUACCAGUUG	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN1398_c0_g1_2030_TPlot.pdf
TRINITY_DN1398_c0_g1:2037	si_s191	TRINITY_DN1398_c0_g1	2026	2045	2037	-26.60	-17.40	0.654135338345865	9	3-6,2043-2040;9-21,2038-2026	1-2,2045-2044[UP5];7-8,2039-2039[AILq]	(((((((((((((.-((((..&..))))..)))))))))))))	UACAUUCCAAGAUU-UUGUCC&UAACGAUUAUUUUGGAAUGUA	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN1398_c0_g1_2037_TPlot.pdf
TRINITY_DN13994_c0_g1:675	si_a451	TRINITY_DN13994_c0_g1	664	684	675	-23.60	-16.10	0.682203389830509	7.5	2-16,683-669	1-1,684-684[UP5];17-21,668-664[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAACGUAACAACAAUUAUUC&AGAUAAUUGUUGUUAUAUAUA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN13994_c0_g1_675_TPlot.pdf
TRINITY_DN13994_c0_g1:678	si_a448	TRINITY_DN13994_c0_g1	667	686	678	-25.50	-17.30	0.67843137254902	5.5	1-5,686-682;7-19,681-669	6-6,x-x[BULq];20-21,668-667[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	ACGUAACAACAAUUA-UUCAU&AUGAGAUAAUUGUUGUUAUAU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN13994_c0_g1_678_TPlot.pdf
TRINITY_DN139_c0_g2:716	si_s133	TRINITY_DN139_c0_g2	705	724	716	-30.10	-21.40	0.710963455149502	4.5	2-8,723-717;10-21,716-705	1-1,724-724[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	GGUUUUUGGUUG-UUCAAUUG&GAGUUGAAUCAAUCAAAAACC	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s133_TRINITY_DN139_c0_g2_716_TPlot.pdf
TRINITY_DN13_c0_g1:3451	si_a639	TRINITY_DN13_c0_g1	3439	3461	3451	-23.60	-15.40	0.652542372881356	6.5	1-9,3461-3453;10-14,3451-3447;15-19,3445-3441	x-x,3452-3452[BULt];x-x,3446-3446[BULt];20-21,3440-3439[UP3]	..(((((.(((((.(((((((((&)))))))))-)))))-)))))..	GAAUGUUCACUCACAAGAAAUCG&CGAUUUUUU-UGAGU-AAUAUAU	4	0.999999999830839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN13_c0_g1_3451_TPlot.pdf
TRINITY_DN14001_c0_g1:369	si_a501	TRINITY_DN14001_c0_g1	358	378	369	-33.50	-22.40	0.66865671641791	7	2-18,377-361;20-20,359-359	1-1,378-378[UP5];19-19,360-360[SIL];21-21,358-358[UP3]	.(.(((((((((((((((((.&.))))))))))))))))).).	AUGUGAGGAGGAUGGAAAACC&CGUUUUUCGUCUUCCUUGGAA	3	0.999999998986108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN14001_c0_g1_369_TPlot.pdf
TRINITY_DN14001_c0_g1:66	si_a410	TRINITY_DN14001_c0_g1	55	75	66	-17.80	-12.40	0.696629213483146	9.5	4-17,72-59	1-3,75-73[UP5];18-21,58-55[UP3]	....((((((((((((((...&...))))))))))))))....	UGUCUUUGAAUAUAAACAUUC&UUUUGUUUAUAUUUAAAUAAA	4	0.999999950610235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN14001_c0_g1_66_TPlot.pdf
TRINITY_DN14004_c0_g1:289	si_s699	TRINITY_DN14004_c0_g1	277	298	289	-28.60	-19.20	0.671328671328671	4.5	1-14,298-285;16-17,283-282;18-21,280-277	15-15,284-284[SIL];x-x,281-281[BULt]	((((.((.((((((((((((((&)))))))))))))).))-))))	GUUCAACAAAUGAAUUGACUAG&UUAGUCGAUUUAUUAGU-GAAC	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN14004_c0_g1_289_TPlot.pdf
TRINITY_DN14008_c0_g2:107	si_s308	TRINITY_DN14008_c0_g2	96	118	107	-32.80	-23.60	0.719512195121951	8	1-3,118-116;5-8,114-111;9-20,108-97	4-4,115-115[SIL];x-x,110-109[BULt];21-21,96-96[UP3]	.((((((((((((..((((.(((&))).))))--)))))))))))).	UAGGGGGACAGAAGUUUUUGGCA&UGCGAAAA--UUCUGUCCUUCUU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN14008_c0_g2_107_TPlot.pdf
TRINITY_DN14009_c0_g1:2518	si_a67	TRINITY_DN14009_c0_g1	2508	2527	2518	-27.20	-19.80	0.727941176470588	7.5	1-11,2527-2517;13-20,2516-2509	12-12,x-x[BULq];21-21,2508-2508[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	UGGAGACAA-UUGGGAGAGGC&GCUUCUUUCAAAUUGUUUUUC	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN14009_c0_g1_2518_TPlot.pdf
TRINITY_DN1400_c0_g1:977	si_s74	TRINITY_DN1400_c0_g1	964	986	977	-25.00	-19.10	0.764	6.5	1-14,986-973;15-20,970-965	x-x,972-971[BULt];21-21,964-964[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	AGGAGGACGAGGAAGAAGAAUAG&CUAUUUUUUUUCUU--UCCUUUC	4	0.999958677919561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1400_c0_g1_977_TPlot.pdf
TRINITY_DN14010_c0_g1:553	si_a784	TRINITY_DN14010_c0_g1	542	562	553	-24.70	-16.70	0.676113360323887	4.5	1-9,562-554;11-14,552-549;16-21,547-542	10-10,553-553[SIL];15-15,548-548[SIL]	((((((.((((.(((((((((&))))))))).)))).))))))	AAGAUAUGGAAUUAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14010_c0_g1_553_TPlot.pdf
TRINITY_DN14010_c0_g1:713	si_s814	TRINITY_DN14010_c0_g1	702	722	713	-26.60	-18.00	0.676691729323308	9	1-13,722-710	14-21,709-702[UP3]	........(((((((((((((&)))))))))))))........	AAAAAUCGAAGAAAAGGUAGC&GUUACCUUUUCUUAAUAAUGA	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN14010_c0_g1_713_TPlot.pdf
TRINITY_DN14010_c0_g1:714	si_s813	TRINITY_DN14010_c0_g1	703	723	714	-27.10	-18.10	0.66789667896679	9	2-14,722-710	1-1,723-723[UP5];15-21,709-703[UP3]	.......(((((((((((((.&.))))))))))))).......	AAAAUCGAAGAAAAGGUAGCA&CGUUACCUUUUCUUAAUAAUG	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN14010_c0_g1_714_TPlot.pdf
TRINITY_DN14010_c0_g1:718	si_s809	TRINITY_DN14010_c0_g1	707	727	718	-28.50	-20.00	0.701754385964912	6.5	1-4,727-724;6-18,722-710	5-5,723-723[SIL];19-21,709-707[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UCGAAGAAAAGGUAGCAAAGG&UCUUCGUUACCUUUUCUUAAU	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN14010_c0_g1_718_TPlot.pdf
TRINITY_DN14010_c0_g1:719	si_s808	TRINITY_DN14010_c0_g1	708	728	719	-28.60	-21.30	0.744755244755245	6	1-5,728-724;7-19,722-710	6-6,723-723[SIL];20-21,709-708[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	CGAAGAAAAGGUAGCAAAGGU&AUCUUCGUUACCUUUUCUUAA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN14010_c0_g1_719_TPlot.pdf
TRINITY_DN14013_c0_g1:165	si_a560	TRINITY_DN14013_c0_g1	154	174	165	-36.60	-24.10	0.658469945355191	9.5	3-15,172-160	1-2,174-173[UP5];16-21,159-154[UP3]	......(((((((((((((..&..)))))))))))))......	ACACUCCGCGGGGAGAUAAUU&CUUUAUCUCCCCGUGAAUCGU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN14013_c0_g1_165_TPlot.pdf
TRINITY_DN14013_c0_g1:167	si_a558	TRINITY_DN14013_c0_g1	156	176	167	-35.40	-24.10	0.680790960451978	11.5	5-17,172-160	1-4,176-173[UP5];18-21,159-156[UP3]	....(((((((((((((....&....)))))))))))))....	ACUCCGCGGGGAGAUAAUUGG&UUCUUUAUCUCCCCGUGAAUC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN14013_c0_g1_167_TPlot.pdf
TRINITY_DN14013_c0_g1:170	si_a555	TRINITY_DN14013_c0_g1	159	179	170	-33.70	-24.10	0.71513353115727	14.5	8-20,172-160	1-7,179-173[UP5];21-21,159-159[UP3]	.(((((((((((((.......&.......))))))))))))).	CCGCGGGGAGAUAAUUGGCCC&UAUUUCUUUAUCUCCCCGUGA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN14013_c0_g1_170_TPlot.pdf
TRINITY_DN14018_c0_g2:178	si_a472	TRINITY_DN14018_c0_g2	167	187	178	-21.50	-14.00	0.651162790697674	15	6-20,182-168	1-5,187-183[UP5];21-21,167-167[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUGUGGCAGUGAUUGGCUUU&AUAUGUAAUUAUUGUUAUAUA	4	0.999999898279812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN14018_c0_g2_178_TPlot.pdf
TRINITY_DN14018_c0_g2:352	si_a785	TRINITY_DN14018_c0_g2	341	362	352	-25.90	-17.40	0.671814671814672	11.5	1-8,362-355;10-19,352-343	9-9,354-353[AILt];20-21,342-341[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	AUAGGUGGAGGAUUUGGAGGAG&CUCUUCUA-UUUUUCUAUUUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14018_c0_g2_352_TPlot.pdf
TRINITY_DN14018_c0_g2:358	si_a64	TRINITY_DN14018_c0_g2	347	367	358	-29.40	-22.90	0.77891156462585	7.5	2-17,366-351;19-21,349-347	1-1,367-367[UP5];18-18,350-350[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GGAGGAUUUGGAGGAGGCGGU&CUCGCUUCUUUCAAAUUGUUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN14018_c0_g2_358_TPlot.pdf
TRINITY_DN14018_c0_g2:402	si_a679	TRINITY_DN14018_c0_g2	390	411	402	-35.40	-24.00	0.677966101694915	8	1-10,411-402;11-12,400-399;14-18,397-393;20-21,391-390	x-x,401-401[BULt];13-13,398-398[SIL];19-19,392-392[SIL]	((.(((((.((.((((((((((&))))))))))-)).))))).))	UUGGAGGCGGCGGUGGAUGGGG&CCUUAUUCAC-GCGGUUUCGAA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a679_TRINITY_DN14018_c0_g2_402_TPlot.pdf
TRINITY_DN14018_c0_g2:403	si_a678	TRINITY_DN14018_c0_g2	391	412	403	-36.30	-24.70	0.680440771349862	8	1-11,412-402;12-13,400-399;15-19,397-393;21-21,391-391	x-x,401-401[BULt];14-14,398-398[SIL];20-20,392-392[SIL]	(.(((((.((.(((((((((((&)))))))))))-)).))))).)	UGGAGGCGGCGGUGGAUGGGGA&UCCUUAUUCAC-GCGGUUUCGA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN14018_c0_g2_403_TPlot.pdf
TRINITY_DN14018_c0_g2:445	si_a311	TRINITY_DN14018_c0_g2	434	455	445	-32.70	-21.32	0.651987767584098	13.5	1-9,455-447;13-17,442-438	10-12,446-443[AILt];18-21,437-434[UP3]	....(((((....(((((((((&)))))))))-...)))))....	GGAGGUGGAGGAUAUCCAGGCG&CGCUUGGAU-UUAUCCAUGAUU	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN14018_c0_g2_445_TPlot.pdf
TRINITY_DN14018_c0_g2:449	si_a308	TRINITY_DN14018_c0_g2	437	458	449	-32.70	-21.52	0.658103975535168	11.5	3-12,456-447;16-20,442-438	1-2,458-457[UP5];13-15,446-443[AILt];21-21,437-437[UP3]	.(((((....((((((((((..&..))))))))))-...))))).	GGUGGAGGAUAUCCAGGCGGUG&AUUCGCUUGGAU-UUAUCCAUG	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN14018_c0_g2_449_TPlot.pdf
TRINITY_DN14018_c0_g2:564	si_s803	TRINITY_DN14018_c0_g2	553	573	564	-26.00	-17.40	0.669230769230769	12	4-13,570-561;15-20,559-554	1-3,573-571[UP5];14-14,560-560[SIL];21-21,553-553[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	UGGAGGUCACGGAGGUGGUGG&AUUUUAUCUUCGUUACCUUUU	3	0.999999999997846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN14018_c0_g2_564_TPlot.pdf
TRINITY_DN14018_c0_g2:565	si_s802	TRINITY_DN14018_c0_g2	554	574	565	-26.40	-17.40	0.659090909090909	13	5-14,570-561;16-21,559-554	1-4,574-571[UP5];15-15,560-560[SIL]	((((((.((((((((((....&....)))))))))).))))))	GGAGGUCACGGAGGUGGUGGA&UAUUUUAUCUUCGUUACCUUU	2	0.999999708257402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN14018_c0_g2_565_TPlot.pdf
TRINITY_DN14018_c0_g2:566	si_s801	TRINITY_DN14018_c0_g2	555	575	566	-28.20	-18.48	0.65531914893617	11.5	1-2,575-574;6-15,570-561;17-21,559-555	3-5,573-571[SIL];16-16,560-560[SIL]	(((((.((((((((((...((&))...)))))))))).)))))	GAGGUCACGGAGGUGGUGGAC&GUAUUUUAUCUUCGUUACCUU	2	0.999960180951311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN14018_c0_g2_566_TPlot.pdf
TRINITY_DN14018_c0_g2:643	si_a792	TRINITY_DN14018_c0_g2	631	653	643	-27.60	-19.50	0.706521739130435	5	1-7,653-647;8-16,645-637;17-20,635-632	x-x,646-646[BULt];x-x,636-636[BULt];21-21,631-631[UP3]	.((((.(((((((((.(((((((&)))))))-)))))))))-)))).	GGGAUAUGGAAAAUAUGGAAAAU&AUUUUUC-UAUUUUCCA-AUCCG	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN14018_c0_g2_643_TPlot.pdf
TRINITY_DN14018_c0_g2:644	si_a791	TRINITY_DN14018_c0_g2	632	654	644	-26.50	-20.20	0.762264150943396	4	1-8,654-647;9-17,645-637;18-21,635-632	x-x,646-646[BULt];x-x,636-636[BULt]	((((.(((((((((.((((((((&))))))))-)))))))))-))))	GGAUAUGGAAAAUAUGGAAAAUA&UAUUUUUC-UAUUUUCCA-AUCC	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN14018_c0_g2_644_TPlot.pdf
TRINITY_DN14018_c0_g2:645	si_a790	TRINITY_DN14018_c0_g2	633	655	645	-25.80	-17.10	0.662790697674419	5	2-9,654-647;10-18,645-637;19-21,635-633	1-1,655-655[UP5];x-x,646-646[BULt];x-x,636-636[BULt]	(((.(((((((((.((((((((.&.))))))))-)))))))))-)))	GAUAUGGAAAAUAUGGAAAAUAA&CUAUUUUUC-UAUUUUCCA-AUC	3	0.999999755336861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN14018_c0_g2_645_TPlot.pdf
TRINITY_DN1401_c0_g1:1364	si_a889	TRINITY_DN1401_c0_g1	1353	1376	1364	-23.60	-15.80	0.669491525423729	7.5	1-7,1376-1370;8-12,1366-1362;14-21,1360-1353	x-x,1369-1367[BULt];13-13,1361-1361[SIL]	((((((((.(((((...(((((((&)))))))---))))).))))))))	GCUUAUUACUACUACUUUAUUGAU&AUCAAUA---UAGUAAUAAUAAGU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN1401_c0_g1_1364_TPlot.pdf
TRINITY_DN1401_c0_g1:1365	si_a888	TRINITY_DN1401_c0_g1	1354	1377	1365	-22.80	-15.50	0.679824561403509	7	1-8,1377-1370;9-13,1366-1362;15-21,1360-1354	x-x,1369-1367[BULt];14-14,1361-1361[SIL]	(((((((.(((((...((((((((&))))))))---))))).)))))))	CUUAUUACUACUACUUUAUUGAUU&AAUCAAUA---UAGUAAUAAUAAG	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN1401_c0_g1_1365_TPlot.pdf
TRINITY_DN1401_c0_g1:1381	si_a128	TRINITY_DN1401_c0_g1	1371	1390	1381	-23.20	-15.60	0.672413793103448	9.5	4-11,1387-1380;13-21,1379-1371	1-3,1390-1388[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AUUGAUUAC-GUUGCUGUUAC&UUUAUAGCAAUAGUAAUUAAU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN1401_c0_g1_1381_TPlot.pdf
TRINITY_DN14020_c0_g1:497	si_a784	TRINITY_DN14020_c0_g1	486	505	497	-24.70	-16.90	0.684210526315789	7.5	1-8,505-498;10-18,497-489	9-9,x-x[BULq];19-21,488-486[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	GAUAUGGAAGAA-AGAAGGGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999999964395475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14020_c0_g1_497_TPlot.pdf
TRINITY_DN14020_c0_g1:498	si_a783	TRINITY_DN14020_c0_g1	487	506	498	-24.70	-17.20	0.696356275303644	7	2-9,505-498;11-19,497-489	1-1,506-506[UP5];10-10,x-x[BULq];20-21,488-487[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	AUAUGGAAGAA-AGAAGGGUG&AACUCUUCUAUUUUUCUAUUU	2	0.999995079587324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN14020_c0_g1_498_TPlot.pdf
TRINITY_DN14020_c0_g1:513	si_s1	TRINITY_DN14020_c0_g1	502	521	513	-18.70	-13.80	0.737967914438503	8.5	1-7,521-515;9-20,514-503	8-8,x-x[BULq];21-21,502-502[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	GGGUGAUAAGUGA-AUGGAGA&UUUUUAUAUUACUUAUUAUUA	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN14020_c0_g1_513_TPlot.pdf
TRINITY_DN14020_c0_g1:805	si_s805	TRINITY_DN14020_c0_g1	791	814	805	-28.60	-20.10	0.702797202797203	11	1-10,814-805;11-16,801-796;18-21,794-791	x-x,804-802[BULt];17-17,795-795[SIL]	((((.((((((...((((((((((&))))))))))---)))))).))))	GGAACGGGUGAUGUCGAGGAUAGA&UUUAUCUUCG---UUACCUUUUCU	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN14020_c0_g1_805_TPlot.pdf
TRINITY_DN14020_c0_g1:806	si_s804	TRINITY_DN14020_c0_g1	792	815	806	-27.90	-19.20	0.688172043010753	11	2-11,814-805;12-17,801-796;19-21,794-792	1-1,815-815[UP5];x-x,804-802[BULt];18-18,795-795[SIL]	(((.((((((...((((((((((.&.))))))))))---)))))).)))	GAACGGGUGAUGUCGAGGAUAGAG&UUUUAUCUUCG---UUACCUUUUC	2	0.999722465673128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN14020_c0_g1_806_TPlot.pdf
TRINITY_DN1402_c0_g1:862	si_a627	TRINITY_DN1402_c0_g1	851	870	862	-29.50	-21.90	0.742372881355932	8.5	1-8,870-863;10-16,862-856	9-9,x-x[BULq];17-21,855-851[UP3]	.....(((((((-((((((((&)))))))).))))))).....	ACGGUGUCGACA-AAUGCGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN1402_c0_g1_862_TPlot.pdf
TRINITY_DN1402_c0_g1:863	si_a626	TRINITY_DN1402_c0_g1	852	871	863	-30.20	-21.90	0.725165562913907	8.5	2-9,870-863;11-17,862-856	1-1,871-871[UP5];10-10,x-x[BULq];18-21,855-852[UP3]	....(((((((-((((((((.&.)))))))).)))))))....	CGGUGUCGACA-AAUGCGCCG&AGGCGUAUUAUGUCGAUUUUU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN1402_c0_g1_863_TPlot.pdf
TRINITY_DN1402_c0_g1:864	si_a624	TRINITY_DN1402_c0_g1	854	873	864	-32.30	-21.90	0.678018575851393	10.5	4-11,870-863;13-19,862-856	1-3,873-871[UP5];12-12,x-x[BULq];20-21,855-854[UP3]	..(((((((-((((((((...&...)))))))).)))))))..	GUGUCGACA-AAUGCGCCGGC&CUAGGCGUAUUAUGUCGAUUU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN1402_c0_g1_864_TPlot.pdf
TRINITY_DN1402_c0_g1:865	si_a623	TRINITY_DN1402_c0_g1	855	874	865	-33.10	-21.90	0.661631419939577	10.5	5-12,870-863;14-20,862-856	1-4,874-871[UP5];13-13,x-x[BULq];21-21,855-855[UP3]	.(((((((-((((((((....&....)))))))).))))))).	UGUCGACA-AAUGCGCCGGCG&ACUAGGCGUAUUAUGUCGAUU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN1402_c0_g1_865_TPlot.pdf
TRINITY_DN14033_c0_g1:1002	si_s39	TRINITY_DN14033_c0_g1	991	1014	1002	-22.30	-15.20	0.681614349775785	13	3-8,1012-1007;9-20,1003-992	1-2,1014-1013[UP5];x-x,1006-1004[BULt];21-21,991-991[UP3]	.((((((((((((...((((((..&..))))))---)))))))))))).	CGGUCCGGUUAUUUCAGAAGAUAC&AAAUCUUU---AAUAAUUGGAUUU	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN14033_c0_g1_1002_TPlot.pdf
TRINITY_DN14033_c0_g1:1281	si_s481	TRINITY_DN14033_c0_g1	1270	1295	1281	-23.00	-17.30	0.752173913043478	12	1-6,1295-1290;7-20,1284-1271	x-x,1289-1285[BULt];21-21,1270-1270[UP3]	.((((((((((((((.....((((((&))))))-----)))))))))))))).	CAUUUAAAUGAAUAUAUUAAAGGAUC&GAUCCU-----AUAUUUAUUUAAAUA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN14033_c0_g1_1281_TPlot.pdf
TRINITY_DN14035_c0_g1:50	si_s20	TRINITY_DN14035_c0_g1	39	62	50	-27.80	-18.42	0.662589928057554	14	3-7,60-56;10-21,50-39	1-2,62-61[UP5];8-9,55-51[AILt]	((((((((((((.....(((((..&..)))))---..))))))))))))	UUAGUUGCAAUCUUCGCUGUAGCU&UACUAUA---UUGAUUGCAACUAA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN14035_c0_g1_50_TPlot.pdf
TRINITY_DN14046_c0_g1:231	si_s144	TRINITY_DN14046_c0_g1	220	240	231	-33.10	-22.40	0.676737160120846	10	6-21,235-220	1-5,240-236[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUUUCCUUUGGGUUUGUUAU&AUCAAAAACCCAAAGGAGGUU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s144_TRINITY_DN14046_c0_g1_231_TPlot.pdf
TRINITY_DN1404_c0_g1:540	si_a68	TRINITY_DN1404_c0_g1	529	548	540	-25.40	-17.40	0.68503937007874	9	1-8,548-541;12-20,538-530	9-11,540-539[AILq];21-21,529-529[UP3]	.(((((((((..-((((((((&))))))))...))))))))).	CGAAAGAUAAGA-GAAAGAGG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999985686521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1404_c0_g1_540_TPlot.pdf
TRINITY_DN14050_c0_g1:1029	si_s22	TRINITY_DN14050_c0_g1	1019	1038	1029	-26.70	-19.00	0.711610486891386	6.5	1-13,1038-1026;16-19,1024-1021	14-15,1025-1025[AILq];20-21,1020-1019[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	GGUUGGG-GCGAUCAAUAUGG&CUAUAUUGAUUGCAACUAAAU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN14050_c0_g1_1029_TPlot.pdf
TRINITY_DN14050_c0_g1:1032	si_s19	TRINITY_DN14050_c0_g1	1021	1041	1032	-27.80	-21.60	0.776978417266187	7.5	2-16,1040-1026;19-19,1023-1023	1-1,1041-1041[UP5];17-18,1025-1024[SIL];20-21,1022-1021[UP3]	..(..(((((((((((((((.&.)))))))))))))))..)..	UUGGGGCGAUCAAUAUGGUGG&UUACUAUAUUGAUUGCAACUA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN14050_c0_g1_1032_TPlot.pdf
TRINITY_DN14050_c0_g1:1033	si_s18	TRINITY_DN14050_c0_g1	1022	1042	1033	-27.50	-21.60	0.785454545454546	8.5	3-17,1040-1026;20-20,1023-1023	1-2,1042-1041[UP5];18-19,1025-1024[SIL];21-21,1022-1022[UP3]	.(..(((((((((((((((..&..)))))))))))))))..).	UGGGGCGAUCAAUAUGGUGGA&AUUACUAUAUUGAUUGCAACU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN14050_c0_g1_1033_TPlot.pdf
TRINITY_DN14050_c0_g1:1035	si_s16	TRINITY_DN14050_c0_g1	1024	1044	1035	-25.60	-20.20	0.7890625	11.5	5-19,1040-1026	1-4,1044-1041[UP5];20-21,1025-1024[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGGCGAUCAAUAUGGUGGAGU&UUAUUACUAUAUUGAUUGCAA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN14050_c0_g1_1035_TPlot.pdf
TRINITY_DN14050_c0_g1:1036	si_s15	TRINITY_DN14050_c0_g1	1025	1045	1036	-25.60	-20.20	0.7890625	12.5	6-20,1040-1026	1-5,1045-1041[UP5];21-21,1025-1025[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGCGAUCAAUAUGGUGGAGUU&AUUAUUACUAUAUUGAUUGCA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN14050_c0_g1_1036_TPlot.pdf
TRINITY_DN14050_c0_g1:1038	si_s13	TRINITY_DN14050_c0_g1	1027	1047	1038	-22.90	-16.50	0.720524017467249	15.5	8-21,1040-1027	1-7,1047-1041[UP5]	((((((((((((((.......&.......))))))))))))))	CGAUCAAUAUGGUGGAGUUCA&UUAUUAUUACUAUAUUGAUUG	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN14050_c0_g1_1038_TPlot.pdf
TRINITY_DN14050_c0_g1:255	si_a449	TRINITY_DN14050_c0_g1	244	264	255	-25.70	-16.80	0.653696498054475	9	1-5,264-260;7-17,258-248	6-6,259-259[SIL];18-21,247-244[UP3]	....(((((((((((.(((((&))))).)))))))))))....	ACACUGAUAGCAGUUUUCUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN14050_c0_g1_255_TPlot.pdf
TRINITY_DN14050_c0_g1:256	si_a448	TRINITY_DN14050_c0_g1	245	265	256	-25.50	-16.80	0.658823529411765	8.5	2-6,264-260;8-18,258-248	1-1,265-265[UP5];7-7,259-259[SIL];19-21,247-245[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	CACUGAUAGCAGUUUUCUCAA&AUGAGAUAAUUGUUGUUAUAU	3	0.999975772617513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN14050_c0_g1_256_TPlot.pdf
TRINITY_DN14050_c0_g1:257	si_a447	TRINITY_DN14050_c0_g1	246	266	257	-25.70	-16.80	0.653696498054475	9.5	3-7,264-260;9-19,258-248	1-2,266-265[UP5];8-8,259-259[SIL];20-21,247-246[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	ACUGAUAGCAGUUUUCUCAAU&UAUGAGAUAAUUGUUGUUAUA	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN14050_c0_g1_257_TPlot.pdf
TRINITY_DN14050_c0_g1:258	si_a446	TRINITY_DN14050_c0_g1	247	267	258	-25.50	-16.80	0.658823529411765	10.5	4-8,264-260;10-20,258-248	1-3,267-265[UP5];9-9,259-259[SIL];21-21,247-247[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUGAUAGCAGUUUUCUCAAUU&AUAUGAGAUAAUUGUUGUUAU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN14050_c0_g1_258_TPlot.pdf
TRINITY_DN14050_c0_g1:951	si_s14	TRINITY_DN14050_c0_g1	940	959	951	-25.30	-16.50	0.652173913043478	7.5	1-4,959-956;6-14,955-947;16-21,945-940	5-5,x-x[BULq];15-15,946-946[SIL]	((((((.(((((((((-((((&)))).))))))))).))))))	GCGAUCCAUAUGGUGG-AGUA&UAUUAUUACUAUAUUGAUUGC	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN14050_c0_g1_951_TPlot.pdf
TRINITY_DN14051_c0_g1:85	si_s483	TRINITY_DN14051_c0_g1	74	94	85	-21.40	-14.10	0.658878504672897	9.5	1-8,94-87;10-11,85-84;13-20,82-75	9-9,86-86[SIL];12-12,83-83[SIL];21-21,74-74[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	AGUAUUUGGUUGUAUGUGGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN14051_c0_g1_85_TPlot.pdf
TRINITY_DN14052_c0_g1:636	si_a17	TRINITY_DN14052_c0_g1	625	644	636	-24.30	-16.10	0.662551440329218	9.5	3-6,642-639;8-21,638-625	1-2,644-643[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	AACUAAAGAUGGGU-GGUUGU&AAAGCCUAUUUAUUUUUAGUU	4	0.999999989055347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN14052_c0_g1_636_TPlot.pdf
TRINITY_DN14055_c0_g1:2001	si_s63	TRINITY_DN14055_c0_g1	1989	2010	2001	-25.80	-17.00	0.65891472868217	4.5	1-6,2010-2005;8-14,2003-1997;15-21,1995-1989	7-7,2004-2004[SIL];x-x,1996-1996[BULt]	(((((((.(((((((.((((((&)))))).)))))))-)))))))	AAAGAAACUAGAAGUCGUUAAC&GUUAGCAACUUCUA-UUUUUUU	3	0.999999973608088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN14055_c0_g1_2001_TPlot.pdf
TRINITY_DN14055_c0_g1:2433	si_a641	TRINITY_DN14055_c0_g1	2422	2442	2433	-23.60	-15.60	0.661016949152542	9	4-17,2439-2426;20-20,2423-2423	1-3,2442-2440[UP5];18-19,2425-2424[SIL];21-21,2422-2422[UP3]	.(..((((((((((((((...&...))))))))))))))..).	AGUGAUAUUACUCAAGAAUUG&AUUUUUUUGAGUAAUAUAUCG	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN14055_c0_g1_2433_TPlot.pdf
TRINITY_DN14055_c0_g1:2434	si_a640	TRINITY_DN14055_c0_g1	2423	2445	2434	-24.10	-17.30	0.717842323651452	8	1-4,2445-2442;5-18,2439-2426;21-21,2423-2423	x-x,2441-2440[BULt];19-20,2425-2424[SIL]	(..((((((((((((((..((((&))))--))))))))))))))..)	GUGAUAUUACUCAAGAAUUGAUC&GAUU--UUUUUGAGUAAUAUAUC	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN14055_c0_g1_2434_TPlot.pdf
TRINITY_DN14055_c0_g1:2435	si_a639	TRINITY_DN14055_c0_g1	2424	2446	2435	-23.60	-17.20	0.728813559322034	9	2-5,2445-2442;6-19,2439-2426	1-1,2446-2446[UP5];x-x,2441-2440[BULt];20-21,2425-2424[UP3]	..((((((((((((((..((((.&.))))--))))))))))))))..	UGAUAUUACUCAAGAAUUGAUCA&CGAUU--UUUUUGAGUAAUAUAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN14055_c0_g1_2435_TPlot.pdf
TRINITY_DN14055_c0_g1:2436	si_a638	TRINITY_DN14055_c0_g1	2425	2447	2436	-24.40	-17.20	0.704918032786885	10	3-6,2445-2442;7-20,2439-2426	1-2,2447-2446[UP5];x-x,2441-2440[BULt];21-21,2425-2425[UP3]	.((((((((((((((..((((..&..))))--)))))))))))))).	GAUAUUACUCAAGAAUUGAUCAU&UCGAUU--UUUUUGAGUAAUAUA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN14055_c0_g1_2436_TPlot.pdf
TRINITY_DN14055_c0_g1:2437	si_a637	TRINITY_DN14055_c0_g1	2426	2444	2437	-25.80	-17.50	0.678294573643411	6.5	1-8,2444-2437;11-21,2436-2426	9-10,x-x[BULq]	(((((((((((--((((((((&))))))))..)))))))))))	AUAUUACUCAA--GAAUUGAU&GUCGAUUUUUUUGAGUAAUAU	3	0.999999602285272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN14055_c0_g1_2437_TPlot.pdf
TRINITY_DN14055_c0_g1:2463	si_a73	TRINITY_DN14055_c0_g1	2452	2472	2463	-21.90	-14.44	0.659360730593607	11	1-3,2472-2470;9-21,2464-2452	4-8,2469-2465[SIL]	(((((((((((((.....(((&))).....)))))))))))))	AAUAAUGAAGAACUAAAGGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999999061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN14055_c0_g1_2463_TPlot.pdf
TRINITY_DN14055_c0_g1:2464	si_a72	TRINITY_DN14055_c0_g1	2453	2473	2464	-21.90	-14.24	0.650228310502283	10.5	1-4,2473-2470;10-21,2464-2453	5-9,2469-2465[SIL]	((((((((((((.....((((&)))).....))))))))))))	AUAAUGAAGAACUAAAGGAAA&UUUCAAAUUGUUUUUCAUUAU	2	0.999999999780851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN14055_c0_g1_2464_TPlot.pdf
TRINITY_DN14055_c0_g1:637	si_a17	TRINITY_DN14055_c0_g1	626	647	637	-24.30	-15.80	0.650205761316872	9	2-7,646-641;10-21,637-626	1-1,647-647[UP5];8-9,640-638[AILt]	((((((((((((...((((((.&.))))))-..))))))))))))	AAUUAAAAGUAAUUCGGGCUUA&AAAGCCU-AUUUAUUUUUAGUU	3	0.999999999818578	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN14055_c0_g1_637_TPlot.pdf
TRINITY_DN14060_c0_g1:1934	si_s184	TRINITY_DN14060_c0_g1	1922	1943	1934	-33.40	-21.90	0.655688622754491	7	1-10,1943-1934;12-21,1931-1922	11-11,1933-1932[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	CAAAAUAGUUACUUAUUCGGGU&GCCCGAGUAA-CGAUUAUUUUG	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN14060_c0_g1_1934_TPlot.pdf
TRINITY_DN14067_c0_g2:2136	si_a788	TRINITY_DN14067_c0_g2	2125	2145	2136	-24.80	-16.60	0.669354838709677	12.5	7-20,2139-2126	1-6,2145-2140[UP5];21-21,2125-2125[UP3]	.((((((((((((((......&......)))))))))))))).	AUGGAAAGUAGAAAAUACGUG&UUCUAUUUUUCUAUUUUCCAA	2	0.999999939947991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN14067_c0_g2_2136_TPlot.pdf
TRINITY_DN1406_c0_g1:1233	si_s81	TRINITY_DN1406_c0_g1	1218	1242	1233	-28.90	-18.98	0.656747404844291	7	1-13,1242-1230;15-21,1224-1218	14-14,1229-1225[AILt]	(((((((.....(((((((((((((&)))))))))))))----.)))))))	AGAAGGAAAUAAAAAGGAAAGAGAG&UUUUCUUUCCUUU----CUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1406_c0_g1_1233_TPlot.pdf
TRINITY_DN1406_c0_g1:1235	si_s79	TRINITY_DN1406_c0_g1	1217	1244	1235	-26.20	-19.10	0.729007633587786	11.5	1-13,1244-1232;14-20,1224-1218	x-x,1231-1225[BULt];21-21,1217-1217[UP3]	.(((((((.......(((((((((((((&)))))))))))))-------))))))).	UAGAAGGAAAUAAAAAGGAAAGAGAGGA&UUUUUUCUUUCCU-------UUCUUCUU	2	0.999999999824836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1406_c0_g1_1235_TPlot.pdf
TRINITY_DN1406_c0_g1:1236	si_s78	TRINITY_DN1406_c0_g1	1218	1245	1236	-26.20	-20.00	0.763358778625954	10.5	1-14,1245-1232;15-21,1224-1218	x-x,1231-1225[BULt]	(((((((.......((((((((((((((&))))))))))))))-------)))))))	AGAAGGAAAUAAAAAGGAAAGAGAGGAA&UUUUUUUCUUUCCU-------UUCUUCU	2	0.999997189631238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1406_c0_g1_1236_TPlot.pdf
TRINITY_DN1406_c0_g1:1237	si_s77	TRINITY_DN1406_c0_g1	1219	1246	1237	-25.50	-19.60	0.768627450980392	10.5	1-15,1246-1232;16-21,1224-1219	x-x,1231-1225[BULt]	((((((.......(((((((((((((((&)))))))))))))))-------))))))	GAAGGAAAUAAAAAGGAAAGAGAGGAAA&UUUUUUUUCUUUCCU-------UUCUUC	2	0.99999570915035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1406_c0_g1_1237_TPlot.pdf
TRINITY_DN1406_c0_g1:1243	si_s71	TRINITY_DN1406_c0_g1	1232	1252	1243	-25.70	-18.90	0.735408560311284	10.5	5-21,1248-1232	1-4,1252-1249[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGGAAAGAGAGGAAAUGAUAC&CUUCUAUUUUUUUUCUUUCCU	3	0.99999997413699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1406_c0_g1_1243_TPlot.pdf
TRINITY_DN1406_c0_g1:1244	si_s70	TRINITY_DN1406_c0_g1	1233	1253	1244	-25.80	-17.60	0.682170542635659	12.5	6-21,1248-1233	1-5,1253-1249[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAAAGAGAGGAAAUGAUACA&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1406_c0_g1_1244_TPlot.pdf
TRINITY_DN14071_c0_g1:791	si_s312	TRINITY_DN14071_c0_g1	779	800	791	-29.00	-19.10	0.658620689655173	12.5	5-11,796-790;12-20,788-780	1-4,800-797[UP5];x-x,789-789[BULt];21-21,779-779[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	AGACAAGAAGCGAUGGAAAAAA&AAAAUUCUGUC-CUUCUUGUUA	3	0.999999999999434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN14071_c0_g1_791_TPlot.pdf
TRINITY_DN1407_c0_g1:3132	si_a80	TRINITY_DN1407_c0_g1	3121	3141	3132	-22.10	-15.10	0.683257918552036	6	1-11,3141-3131;14-18,3128-3124	12-13,3130-3129[SIL];19-21,3123-3121[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	AUGUCUUAUAAAUGAAAAACA&UGUUUUUCAUUAUUAAGAAAA	4	0.999961159251471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1407_c0_g1_3132_TPlot.pdf
TRINITY_DN1407_c0_g1:768	si_s823	TRINITY_DN1407_c0_g1	757	777	768	-22.20	-14.90	0.671171171171171	7	1-5,777-773;8-18,770-760	6-7,772-771[SIL];19-21,759-757[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	AUAUGUUUUUCAUUUAUAAGA&UCUUAAUAAUGAAAAACAAUU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN1407_c0_g1_768_TPlot.pdf
TRINITY_DN1407_c0_g3:592	si_a322	TRINITY_DN1407_c0_g3	581	602	592	-27.00	-17.70	0.655555555555556	9.5	2-5,601-598;8-20,594-582	1-1,602-602[UP5];6-7,597-595[AILt];21-21,581-581[UP3]	.(((((((((((((...((((.&.))))-..))))))))))))).	UGGAAUGAAGAAAUAAUUGGAA&AUCCA-UGAUUUUUUUAUUCCU	4	0.99999994174196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN1407_c0_g3_592_TPlot.pdf
TRINITY_DN1407_c0_g3:75	si_s823	TRINITY_DN1407_c0_g3	64	84	75	-22.20	-14.90	0.671171171171171	7	1-5,84-80;8-18,77-67	6-7,79-78[SIL];19-21,66-64[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	AUAUGUUUUUCAUUUAUAAGA&UCUUAAUAAUGAAAAACAAUU	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN1407_c0_g3_75_TPlot.pdf
TRINITY_DN1407_c0_g3:77	si_s821	TRINITY_DN1407_c0_g3	66	86	77	-22.20	-15.00	0.675675675675676	8	3-7,84-80;10-20,77-67	1-2,86-85[UP5];8-9,79-78[SIL];21-21,66-66[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	AUGUUUUUCAUUUAUAAGACA&UUUCUUAAUAAUGAAAAACAA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN1407_c0_g3_77_TPlot.pdf
TRINITY_DN1407_c10_g1:259	si_a417	TRINITY_DN1407_c10_g1	248	269	259	-21.40	-15.00	0.700934579439252	3.5	1-7,269-263;8-14,261-255;16-21,253-248	x-x,262-262[BULt];15-15,254-254[SIL]	((((((.(((((((.(((((((&)))))))-))))))).))))))	UCCUGUUUUUAUUUAAAAUAUA&UAUAUUU-AAAUAAAUAUAGGA	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN1407_c10_g1_259_TPlot.pdf
TRINITY_DN1407_c15_g1:207	si_s823	TRINITY_DN1407_c15_g1	196	216	207	-22.20	-14.60	0.657657657657658	8	1-5,216-212;8-18,209-199	6-7,211-210[SIL];19-21,198-196[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	AUAUGUUUUUCAUUUAUAGGA&UCUUAAUAAUGAAAAACAAUU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN1407_c15_g1_207_TPlot.pdf
TRINITY_DN1407_c6_g1:165	si_s505	TRINITY_DN1407_c6_g1	153	175	165	-24.70	-17.90	0.724696356275304	4.5	1-7,175-169;8-10,167-165;11-21,163-153	x-x,168-168[BULt];x-x,164-164[BULt]	(((((((((((.(((.(((((((&)))))))-)))-)))))))))))	AAGAAUAUGGAUAUUAGUUUUGU&ACAAAAC-AAU-UCUAUAUUCUU	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN1407_c6_g1_165_TPlot.pdf
TRINITY_DN1407_c6_g1:166	si_s504	TRINITY_DN1407_c6_g1	154	176	166	-24.70	-18.30	0.740890688259109	4.5	1-8,176-169;9-11,167-165;12-21,163-154	x-x,168-168[BULt];x-x,164-164[BULt]	((((((((((.(((.((((((((&))))))))-)))-))))))))))	AGAAUAUGGAUAUUAGUUUUGUU&AACAAAAC-AAU-UCUAUAUUCU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN1407_c6_g1_166_TPlot.pdf
TRINITY_DN1408_c1_g1:2539	si_s424	TRINITY_DN1408_c1_g1	2527	2548	2539	-22.90	-15.50	0.676855895196507	6.5	2-5,2547-2544;7-10,2542-2539;11-21,2537-2527	1-1,2548-2548[UP5];6-6,2543-2543[SIL];x-x,2538-2538[BULt]	(((((((((((.((((.((((.&.)))).))))-)))))))))))	GUAAUUGUUGUAUAUAAGGAAA&AUUCUAUAUA-ACAAUAAUUAC	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN1408_c1_g1_2539_TPlot.pdf
TRINITY_DN1408_c1_g1:454	si_s85	TRINITY_DN1408_c1_g1	443	464	454	-33.80	-22.40	0.662721893491124	6.5	1-6,464-459;7-13,457-451;15-20,449-444	x-x,458-458[BULt];14-14,450-450[SIL];21-21,443-443[UP3]	.((((((.(((((((.((((((&))))))-))))))).)))))).	AUGAAGAUGAGGAAGUGGAAAG&CUUUCC-UUUCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1408_c1_g1_454_TPlot.pdf
TRINITY_DN1408_c1_g1:665	si_a789	TRINITY_DN1408_c1_g1	654	674	665	-24.80	-19.00	0.766129032258065	6	1-9,674-666;11-21,664-654	10-10,665-665[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AUUGGAGGAUGAAAAAGUGGA&UCUAUUUUUCUAUUUUCCAAU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1408_c1_g1_665_TPlot.pdf
TRINITY_DN1408_c1_g1:969	si_a787	TRINITY_DN1408_c1_g1	958	977	969	-26.30	-17.70	0.673003802281369	7	1-8,977-970;11-13,968-966;15-20,964-959	9-10,969-969[AILq];14-14,965-965[SIL];21-21,958-958[UP3]	.((((((.(((.-((((((((&))))))))..))).)))))).	AGGAAAACAGAU-GAUAGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.999999999998648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1408_c1_g1_969_TPlot.pdf
TRINITY_DN1408_c1_g1:970	si_a786	TRINITY_DN1408_c1_g1	959	978	970	-26.60	-18.80	0.706766917293233	6	1-9,978-970;12-14,968-966;16-21,964-959	10-11,969-969[AILq];15-15,965-965[SIL]	((((((.(((.-(((((((((&)))))))))..))).))))))	GGAAAACAGAU-GAUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999995836868361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1408_c1_g1_970_TPlot.pdf
TRINITY_DN14091_c0_g1:3298	si_a870	TRINITY_DN14091_c0_g1	3287	3307	3298	-24.80	-17.50	0.705645161290323	11.5	6-20,3302-3288	1-5,3307-3303[UP5];21-21,3287-3287[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUUGCAGCUAAAUUUUGAAAA&UAUUAAAGAUUUAGUUGCAAU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN14091_c0_g1_3298_TPlot.pdf
TRINITY_DN1409_c0_g1:1751	si_s553	TRINITY_DN1409_c0_g1	1740	1760	1751	-23.50	-16.30	0.693617021276596	5.5	1-10,1760-1751;12-19,1749-1742	11-11,1750-1750[SIL];20-21,1741-1740[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	UAGAAAAUGUAGAUUCUAUUU&AAAUAGAAUUAAUAUUUUCGG	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN1409_c0_g1_1751_TPlot.pdf
TRINITY_DN1409_c0_g1:1752	si_s552	TRINITY_DN1409_c0_g1	1741	1761	1752	-21.10	-16.50	0.781990521327014	5.5	2-11,1760-1751;13-20,1749-1742	1-1,1761-1761[UP5];12-12,1750-1750[SIL];21-21,1741-1741[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	AGAAAAUGUAGAUUCUAUUUA&AAAAUAGAAUUAAUAUUUUCG	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN1409_c0_g1_1752_TPlot.pdf
TRINITY_DN1409_c0_g1:1753	si_s551	TRINITY_DN1409_c0_g1	1742	1762	1753	-21.30	-16.10	0.755868544600939	5.5	3-12,1760-1751;14-21,1749-1742	1-2,1762-1761[UP5];13-13,1750-1750[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GAAAAUGUAGAUUCUAUUUAG&CAAAAUAGAAUUAAUAUUUUC	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN1409_c0_g1_1753_TPlot.pdf
TRINITY_DN1409_c0_g1:1754	si_s550	TRINITY_DN1409_c0_g1	1743	1763	1754	-20.30	-13.70	0.67487684729064	4	1-2,1763-1762;4-13,1760-1751;15-21,1749-1743	3-3,1761-1761[SIL];14-14,1750-1750[SIL]	(((((((.((((((((((.((&)).)))))))))).)))))))	AAAAUGUAGAUUCUAUUUAGA&UCAAAAUAGAAUUAAUAUUUU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN1409_c0_g1_1754_TPlot.pdf
TRINITY_DN1409_c0_g1:1789	si_a416	TRINITY_DN1409_c0_g1	1778	1798	1789	-20.50	-16.20	0.790243902439024	6.5	4-20,1795-1779	1-3,1798-1796[UP5];21-21,1778-1778[UP3]	.(((((((((((((((((...&...))))))))))))))))).	ACUGUAUUUAUUUAAAUAAAA&UUAUAUUUAAAUAAAUAUAGG	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN1409_c0_g1_1789_TPlot.pdf
TRINITY_DN1409_c0_g1:1790	si_a415	TRINITY_DN1409_c0_g1	1779	1799	1790	-18.10	-15.70	0.867403314917127	7.5	5-21,1795-1779	1-4,1799-1796[UP5]	(((((((((((((((((....&....)))))))))))))))))	CUGUAUUUAUUUAAAUAAAAA&UUUAUAUUUAAAUAAAUAUAG	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN1409_c0_g1_1790_TPlot.pdf
TRINITY_DN140_c0_g1:3158	si_s91	TRINITY_DN140_c0_g1	3144	3167	3158	-34.70	-23.30	0.671469740634006	10	2-13,3166-3155;14-19,3151-3146	1-1,3167-3167[UP5];x-x,3154-3152[BULt];20-21,3145-3144[UP3]	..((((((...((((((((((((.&.))))))))))))---))))))..	AACGGGGCAUCGAAGAGGAGGAGG&UUUCUUCUUCUUC---GCUUCGGA	4	0.999999999999258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN140_c0_g1_3158_TPlot.pdf
TRINITY_DN14100_c0_g1:428	si_a576	TRINITY_DN14100_c0_g1	417	443	428	-28.70	-19.00	0.662020905923345	15	1-9,443-435;10-13,428-425;15-21,423-417	x-x,434-429[BULt];14-14,424-424[SIL]	(((((((.((((......(((((((((&)))))))))------)))).)))))))	UUCUUGUCACAGGAUGUUACAUGCGAU&AUCGUAUGU------UUGUAACAAGAA	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN14100_c0_g1_428_TPlot.pdf
TRINITY_DN14101_c0_g1:462	si_a556	TRINITY_DN14101_c0_g1	450	471	462	-33.40	-22.80	0.682634730538922	10.5	5-16,467-456;18-21,453-450	1-4,471-468[UP5];17-17,455-454[AILt]	((((..((((((((((((....&....))))))))))))-.))))	UUCGUAGGGGAGAUAGAGUUGG&AUUUCUUUAUCUCCCC-GUGAA	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN14101_c0_g1_462_TPlot.pdf
TRINITY_DN14101_c0_g1:586	si_s554	TRINITY_DN14101_c0_g1	575	595	586	-25.90	-23.00	0.888030888030888	4.5	3-20,593-576	1-2,595-594[UP5];21-21,575-575[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	ACCGAAAGUAUUAAUUCUAAU&AAUAGAAUUAAUAUUUUCGGG	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN14101_c0_g1_586_TPlot.pdf
TRINITY_DN1410_c0_g1:344	si_a777	TRINITY_DN1410_c0_g1	333	353	344	-27.00	-18.00	0.666666666666667	11	4-16,350-338	1-3,353-351[UP5];17-21,337-333[UP3]	.....(((((((((((((...&...))))))))))))).....	UGGCUUAGAGGAGUUGAAGGU&UGAUUCAACUCUUCUAUUUUU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN1410_c0_g1_344_TPlot.pdf
TRINITY_DN1410_c0_g1:345	si_a776	TRINITY_DN1410_c0_g1	334	354	345	-27.10	-18.00	0.664206642066421	11.5	5-17,350-338	1-4,354-351[UP5];18-21,337-334[UP3]	....(((((((((((((....&....)))))))))))))....	GGCUUAGAGGAGUUGAAGGUG&UUGAUUCAACUCUUCUAUUUU	2	0.995319218271231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN1410_c0_g1_345_TPlot.pdf
TRINITY_DN1410_c0_g1:519	si_s807	TRINITY_DN1410_c0_g1	509	528	519	-28.90	-18.80	0.650519031141869	6.5	1-14,528-515;17-19,513-511	15-16,514-514[AILq];20-21,510-509[UP3]	..(((.-((((((((((((((&))))))))))))))..)))..	UCAGAC-AGGUAAUGAGGAUG&UAUCUUCGUUACCUUUUCUUA	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1410_c0_g1_519_TPlot.pdf
TRINITY_DN1410_c0_g1:523	si_s803	TRINITY_DN1410_c0_g1	512	532	523	-26.00	-19.80	0.761538461538462	11	4-18,529-515	1-3,532-530[UP5];19-21,514-512[UP3]	...(((((((((((((((...&...)))))))))))))))...	GACAGGUAAUGAGGAUGAUGA&AUUUUAUCUUCGUUACCUUUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1410_c0_g1_523_TPlot.pdf
TRINITY_DN1410_c0_g1:525	si_s801	TRINITY_DN1410_c0_g1	514	534	525	-28.20	-19.80	0.702127659574468	12.5	6-20,529-515	1-5,534-530[UP5];21-21,514-514[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGGUAAUGAGGAUGAUGAAA&GUAUUUUAUCUUCGUUACCUU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN1410_c0_g1_525_TPlot.pdf
TRINITY_DN1410_c0_g1:526	si_s800	TRINITY_DN1410_c0_g1	515	535	526	-29.70	-19.80	0.666666666666667	13.5	7-21,529-515	1-6,535-530[UP5]	(((((((((((((((......&......)))))))))))))))	AGGUAAUGAGGAUGAUGAAAG&CGUAUUUUAUCUUCGUUACCU	2	0.991386537167641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN1410_c0_g1_526_TPlot.pdf
TRINITY_DN1410_c0_g1:561	si_a551	TRINITY_DN1410_c0_g1	550	570	561	-31.60	-20.80	0.658227848101266	9	2-10,569-561;13-19,558-552	1-1,570-570[UP5];11-12,560-559[SIL];20-21,551-550[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	AUGGAGAUACUGAGAUGGAUA&AAUCUAUUUCUUUAUCUCCCC	2	0.997326500109187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN1410_c0_g1_561_TPlot.pdf
TRINITY_DN1410_c0_g1:564	si_a548	TRINITY_DN1410_c0_g1	553	575	564	-27.20	-18.60	0.683823529411765	8.5	1-4,575-572;5-13,569-561;16-21,558-553	x-x,571-570[BULt];14-15,560-559[SIL]	((((((..(((((((((..((((&))))--)))))))))..))))))	GAGAUACUGAGAUGGAUAAUGAG&UUCA--AUCUAUUUCUUUAUCUC	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN1410_c0_g1_564_TPlot.pdf
TRINITY_DN1410_c0_g1:590	si_s73	TRINITY_DN1410_c0_g1	572	599	590	-24.00	-15.90	0.6625	14	2-15,598-585;16-20,577-573	1-1,599-599[UP5];x-x,584-578[BULt];21-21,572-572[UP3]	.(((((.......((((((((((((((.&.))))))))))))))-------))))).	UGAGGAUGAUGAUGAGGAAGAAGAUGGU&UCUAUUUUUUUUCUU-------UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1410_c0_g1_590_TPlot.pdf
TRINITY_DN1410_c0_g1:591	si_s72	TRINITY_DN1410_c0_g1	573	600	591	-24.10	-15.90	0.659751037344398	14.5	3-16,598-585;17-21,577-573	1-2,600-599[UP5];x-x,584-578[BULt]	(((((.......((((((((((((((..&..))))))))))))))-------)))))	GAGGAUGAUGAUGAGGAAGAAGAUGGUG&UUCUAUUUUUUUUCUU-------UCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1410_c0_g1_591_TPlot.pdf
TRINITY_DN1410_c0_g1:598	si_s809	TRINITY_DN1410_c0_g1	586	607	598	-28.50	-20.50	0.719298245614035	8.5	2-11,606-597;12-18,595-589	1-1,607-607[UP5];x-x,596-596[BULt];19-21,588-586[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	AGGAAGAAGAUGGUGAUGAAGG&UCUUCGUUACC-UUUUCUUAAU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1410_c0_g1_598_TPlot.pdf
TRINITY_DN1410_c0_g1:599	si_s808	TRINITY_DN1410_c0_g1	587	608	599	-28.60	-20.50	0.716783216783217	9.5	3-12,606-597;13-19,595-589	1-2,608-607[UP5];x-x,596-596[BULt];20-21,588-587[UP3]	..(((((((.((((((((((..&..))))))))))-)))))))..	GGAAGAAGAUGGUGAUGAAGGA&AUCUUCGUUACC-UUUUCUUAA	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1410_c0_g1_599_TPlot.pdf
TRINITY_DN1410_c0_g1:602	si_s805	TRINITY_DN1410_c0_g1	590	611	602	-28.60	-19.20	0.671328671328671	12.5	6-15,606-597;16-21,595-590	1-5,611-607[UP5];x-x,596-596[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	AGAAGAUGGUGAUGAAGGAAUU&UUUAUCUUCGUUACC-UUUUCU	4	0.999999998846462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1410_c0_g1_602_TPlot.pdf
TRINITY_DN14110_c0_g2:362	si_a704	TRINITY_DN14110_c0_g2	351	371	362	-29.30	-19.10	0.651877133105802	5	2-10,370-362;12-16,361-357;17-21,355-351	1-1,371-371[UP5];11-11,x-x[BULq];x-x,356-356[BULt]	(((((.(((((-(((((((((.&.))))))))).)))))-)))))	AUUAUCUUUGG-AUGUACUAGG&ACUGGUACAUUCCAAA-AUAAU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN14110_c0_g2_362_TPlot.pdf
TRINITY_DN14113_c0_g3:16	si_a546	TRINITY_DN14113_c0_g3	2	25	16	-28.60	-20.32	0.71048951048951	6	1-14,25-12;17-21,6-2	15-16,11-7[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN14113_c0_g3_16_TPlot.pdf
TRINITY_DN1411_c0_g1:693	si_a406	TRINITY_DN1411_c0_g1	679	702	693	-19.80	-14.60	0.737373737373737	12.5	1-11,702-692;12-20,688-680	x-x,691-689[BULt];21-21,679-679[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	CUUGGAUGUAUCUAGCAGGACAGU&AUUGUUUUGUU---UAUAUUUAAA	4	0.999990258141989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1411_c0_g1_693_TPlot.pdf
TRINITY_DN14123_c0_g1:595	si_a648	TRINITY_DN14123_c0_g1	584	604	595	-31.10	-20.40	0.655948553054662	5	1-4,604-601;6-12,599-593;14-21,591-584	5-5,600-600[SIL];13-13,592-592[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	CAUUUCCCCAUGUAUUUUUCA&UGAGUAAUAUAUCGGGAAAUG	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN14123_c0_g1_595_TPlot.pdf
TRINITY_DN1412_c0_g1:1144	si_a757	TRINITY_DN1412_c0_g1	1133	1163	1144	-33.10	-22.50	0.6797583081571	24	1-5,1163-1159;6-19,1148-1135	x-x,1158-1149[BULt];20-21,1134-1133[UP3]	..((((((((((((((..........(((((&)))))----------))))))))))))))..	CCUCAGGAACCCGAAGUGAUAAUGCAGAGGU&ACCUC----------CUUUGGGUUUUUGAUU	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1412_c0_g1_1144_TPlot.pdf
TRINITY_DN1412_c0_g1:1145	si_a756	TRINITY_DN1412_c0_g1	1134	1164	1145	-33.10	-23.40	0.706948640483384	23	1-6,1164-1159;7-20,1148-1135	x-x,1158-1149[BULt];21-21,1134-1134[UP3]	.((((((((((((((..........((((((&))))))----------)))))))))))))).	CUCAGGAACCCGAAGUGAUAAUGCAGAGGUU&AACCUC----------CUUUGGGUUUUUGAU	2	0.97326627254944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1412_c0_g1_1145_TPlot.pdf
TRINITY_DN14141_c0_g1:2071	si_s88	TRINITY_DN14141_c0_g1	2060	2081	2071	-34.80	-23.80	0.683908045977012	7	1-6,2081-2076;7-17,2074-2064	x-x,2075-2075[BULt];18-21,2063-2060[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UCGACGAAGAAGAGGAAAAGGA&UCCUUU-CUUCUUCUUCGCUUC	3	0.999999999941609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN14141_c0_g1_2071_TPlot.pdf
TRINITY_DN14141_c0_g1:2077	si_s83	TRINITY_DN14141_c0_g1	2065	2086	2077	-30.90	-28.30	0.915857605177994	3.5	1-11,2086-2076;12-21,2074-2065	x-x,2075-2075[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	GAAGAAGAGGAAAAGGAAGGAA&UUCUUUCCUUU-CUUCUUCUUC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN14141_c0_g1_2077_TPlot.pdf
TRINITY_DN14141_c0_g1:2079	si_s81	TRINITY_DN14141_c0_g1	2067	2088	2079	-28.90	-25.00	0.865051903114187	3.5	2-13,2087-2076;14-21,2074-2067	1-1,2088-2088[UP5];x-x,2075-2075[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AGAAGAGGAAAAGGAAGGAAAU&UUUUCUUUCCUUU-CUUCUUCU	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN14141_c0_g1_2079_TPlot.pdf
TRINITY_DN14141_c0_g1:2082	si_s78	TRINITY_DN14141_c0_g1	2070	2091	2082	-26.20	-19.60	0.748091603053435	9.5	5-16,2087-2076;17-21,2074-2070	1-4,2091-2088[UP5];x-x,2075-2075[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	AGAGGAAAAGGAAGGAAAUAAU&UUUUUUUCUUUCCUUU-CUUCU	4	0.999999999997917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN14141_c0_g1_2082_TPlot.pdf
TRINITY_DN14141_c0_g1:2206	si_s76	TRINITY_DN14141_c0_g1	2195	2215	2206	-23.60	-16.10	0.682203389830509	16.5	9-20,2207-2196	1-8,2215-2208[UP5];21-21,2195-2195[UP3]	.((((((((((((........&........)))))))))))).	UAGGAAGGAAAGAUAUAACGU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN14141_c0_g1_2206_TPlot.pdf
TRINITY_DN14141_c0_g1:2207	si_s71	TRINITY_DN14141_c0_g1	2196	2221	2207	-25.70	-17.48	0.680155642023346	18.5	1-6,2221-2216;10-21,2207-2196	7-9,2215-2208[AILt]	((((((((((((........((((((&))))))-----...))))))))))))	AGGAAGGAAAGAUAUAACGUUAGGAG&CUUCUA-----UUUUUUUUCUUUCCU	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14141_c0_g1_2207_TPlot.pdf
TRINITY_DN1414_c0_g1:2673	si_a767	TRINITY_DN1414_c0_g1	2662	2682	2673	-30.10	-20.50	0.681063122923588	8.5	1-5,2682-2678;7-20,2676-2663	6-6,2677-2677[SIL];21-21,2662-2662[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	UAGUUGAGUCAGUUAUGGAUC&GGUUUUUGAUUGAUUCAACUC	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN1414_c0_g1_2673_TPlot.pdf
TRINITY_DN1414_c0_g1:2674	si_a766	TRINITY_DN1414_c0_g1	2663	2683	2674	-30.50	-21.60	0.708196721311475	8	1-6,2683-2678;8-21,2676-2663	7-7,2677-2677[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	AGUUGAGUCAGUUAUGGAUCU&GGGUUUUUGAUUGAUUCAACU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN1414_c0_g1_2674_TPlot.pdf
TRINITY_DN1414_c0_g1:2675	si_a765	TRINITY_DN1414_c0_g1	2664	2684	2675	-30.50	-20.80	0.681967213114754	9.5	2-7,2683-2678;9-21,2676-2664	1-1,2684-2684[UP5];8-8,2677-2677[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GUUGAGUCAGUUAUGGAUCUG&UGGGUUUUUGAUUGAUUCAAC	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN1414_c0_g1_2675_TPlot.pdf
TRINITY_DN1414_c0_g1:2958	si_a21	TRINITY_DN1414_c0_g1	2947	2967	2958	-24.30	-16.78	0.690534979423868	11.5	1-7,2967-2961;11-19,2957-2949	8-10,2960-2958[SIL];20-21,2948-2947[UP3]	..(((((((((...(((((((&)))))))...)))))))))..	CCAGAGCUAGACAGGAAUGGG&CCUAUUUAUUUUUAGUUCUAA	2	0.992673290620823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN1414_c0_g1_2958_TPlot.pdf
TRINITY_DN1414_c0_g1:2959	si_a20	TRINITY_DN1414_c0_g1	2948	2968	2959	-26.70	-18.58	0.695880149812734	10.5	1-8,2968-2961;12-20,2957-2949	9-11,2960-2958[SIL];21-21,2948-2948[UP3]	.(((((((((...((((((((&))))))))...))))))))).	CAGAGCUAGACAGGAAUGGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1414_c0_g1_2959_TPlot.pdf
TRINITY_DN1414_c0_g1:2960	si_a19	TRINITY_DN1414_c0_g1	2949	2969	2960	-27.00	-19.28	0.714074074074074	10	1-9,2969-2961;13-21,2957-2949	10-12,2960-2958[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	AGAGCUAGACAGGAAUGGGUU&AGCCUAUUUAUUUUUAGUUCU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1414_c0_g1_2960_TPlot.pdf
TRINITY_DN1414_c0_g1:2961	si_a18	TRINITY_DN1414_c0_g1	2950	2970	2961	-26.30	-18.28	0.695057034220532	10	2-10,2969-2961;14-21,2957-2950	1-1,2970-2970[UP5];11-13,2960-2958[SIL]	((((((((...(((((((((.&.)))))))))...))))))))	GAGCUAGACAGGAAUGGGUUA&AAGCCUAUUUAUUUUUAGUUC	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN1414_c0_g1_2961_TPlot.pdf
TRINITY_DN1414_c0_g1:3640	si_a838	TRINITY_DN1414_c0_g1	3629	3649	3640	-26.50	-17.30	0.652830188679245	13.5	6-17,3644-3633	1-5,3649-3645[UP5];18-21,3632-3629[UP3]	....((((((((((((.....&.....))))))))))))....	UCGCAGCAGCUUCUAUAGAGU&AAAAAAUAGAAGUUGCUAACU	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN1414_c0_g1_3640_TPlot.pdf
TRINITY_DN1414_c0_g1:3641	si_a837	TRINITY_DN1414_c0_g1	3630	3650	3641	-25.80	-17.30	0.670542635658915	14.5	7-18,3644-3633	1-6,3650-3645[UP5];19-21,3632-3630[UP3]	...((((((((((((......&......))))))))))))...	CGCAGCAGCUUCUAUAGAGUG&AAAAAAAUAGAAGUUGCUAAC	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN1414_c0_g1_3641_TPlot.pdf
TRINITY_DN1414_c0_g1:3658	si_s521	TRINITY_DN1414_c0_g1	3647	3667	3658	-23.90	-16.70	0.698744769874477	8.5	2-5,3666-3663;8-18,3660-3650	1-1,3667-3667[UP5];6-7,3662-3661[SIL];19-21,3649-3647[UP3]	...(((((((((((..((((.&.))))..)))))))))))...	AGUGUGAUUUCGAAAGAAGAU&UUCUUAAUUCGAAAUCAUUUU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN1414_c0_g1_3658_TPlot.pdf
TRINITY_DN1414_c0_g1:489	si_a463	TRINITY_DN1414_c0_g1	478	498	489	-19.70	-13.00	0.65989847715736	9.5	4-8,495-491;10-20,489-479	1-3,498-496[UP5];9-9,490-490[SIL];21-21,478-478[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUAGUUACAUAUGGUAUAAUU&UUAUAUAUAAUAUGUAAUUAU	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1414_c0_g1_489_TPlot.pdf
TRINITY_DN1414_c0_g1:666	si_a123	TRINITY_DN1414_c0_g1	655	673	666	-26.60	-17.30	0.650375939849624	8	1-7,673-667;10-18,666-658	8-9,x-x[BULq];19-21,657-655[UP3]	...(((((((((--(((((((&)))))))..)))))))))...	UACCUAUUGCUA--AAACAGG&CUUGUUUUAUAGCAAUAGUAA	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN1414_c0_g1_666_TPlot.pdf
TRINITY_DN14157_c1_g1:317	si_a510	TRINITY_DN14157_c1_g1	304	326	317	-37.00	-24.38	0.658918918918919	12	3-11,324-316;14-20,311-305	1-2,326-325[UP5];12-13,315-312[AILt];21-21,304-304[UP3]	.(((((((....(((((((((..&..)))))))))--..))))))).	GGCCUUACUGAAUCCAAGGGACC&UCUUCCUUGGA--AUGUAAGGCG	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN14157_c1_g1_317_TPlot.pdf
TRINITY_DN1416_c0_g1:1054	si_a497	TRINITY_DN1416_c0_g1	1042	1063	1054	-32.00	-22.10	0.690625	8.5	1-9,1063-1055;11-12,1053-1052;14-17,1050-1047;18-21,1045-1042	10-10,1054-1054[SIL];13-13,1051-1051[SIL];x-x,1046-1046[BULt]	((((.((((.((.(((((((((&))))))))).)).))))-))))	GAGGAAAGAGGGUGGGCGACAU&AUGUCGUUUUUCGUCUU-CCUU	4	0.999999998747172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1416_c0_g1_1054_TPlot.pdf
TRINITY_DN1416_c0_g1:2183	si_s75	TRINITY_DN1416_c0_g1	2172	2192	2183	-24.00	-17.00	0.708333333333333	9.5	4-19,2189-2174	1-3,2192-2190[UP5];20-21,2173-2172[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGGAGGGAAGAAAAGAACGG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1416_c0_g1_2183_TPlot.pdf
TRINITY_DN1416_c0_g3:508	si_s805	TRINITY_DN1416_c0_g3	497	517	508	-28.60	-20.70	0.723776223776224	10.5	5-18,513-500	1-4,517-514[UP5];19-21,499-497[UP3]	...((((((((((((((....&....))))))))))))))...	AUCGAAGGUAACGAAGAAGGC&UUUAUCUUCGUUACCUUUUCU	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1416_c0_g3_508_TPlot.pdf
TRINITY_DN1416_c0_g3:510	si_s803	TRINITY_DN1416_c0_g3	499	519	510	-26.00	-20.70	0.796153846153846	12.5	7-20,513-500	1-6,519-514[UP5];21-21,499-499[UP3]	.((((((((((((((......&......)))))))))))))).	CGAAGGUAACGAAGAAGGCGU&AUUUUAUCUUCGUUACCUUUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1416_c0_g3_510_TPlot.pdf
TRINITY_DN14171_c0_g1:1000	si_a325	TRINITY_DN14171_c0_g1	989	1015	1000	-25.90	-20.10	0.776061776061776	17	1-9,1015-1007;10-20,1000-990	x-x,1006-1001[BULt];21-21,989-989[UP3]	.(((((((((((......(((((((((&)))))))))------))))))))))).	CCGAGGAGUGGAAGAACAGAAAUCAUG&CAUGAUUUU------UUUAUUCCUUGU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN14171_c0_g1_1000_TPlot.pdf
TRINITY_DN14171_c0_g1:1008	si_a323	TRINITY_DN14171_c0_g1	991	1017	1008	-26.80	-20.40	0.761194029850746	16	2-11,1016-1007;12-21,1000-991	1-1,1017-1017[UP5];x-x,1006-1001[BULt]	((((((((((......((((((((((.&.))))))))))------))))))))))	GAGGAGUGGAAGAACAGAAAUCAUGGU&UCCAUGAUUUU------UUUAUUCCUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN14171_c0_g1_1008_TPlot.pdf
TRINITY_DN14171_c0_g1:1009	si_a322	TRINITY_DN14171_c0_g1	992	1018	1009	-27.00	-19.20	0.711111111111111	17.5	3-12,1016-1007;13-21,1000-992	1-2,1018-1017[UP5];x-x,1006-1001[BULt]	(((((((((......((((((((((..&..))))))))))------)))))))))	AGGAGUGGAAGAACAGAAAUCAUGGUU&AUCCAUGAUUUU------UUUAUUCCU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN14171_c0_g1_1009_TPlot.pdf
TRINITY_DN14171_c0_g1:1010	si_a321	TRINITY_DN14171_c0_g1	993	1019	1010	-26.70	-17.90	0.670411985018727	13	4-13,1016-1007;14-21,1000-993	1-3,1019-1017[UP5];x-x,1006-1001[BULt]	((((((((......((((((((((...&...))))))))))------))))))))	GGAGUGGAAGAACAGAAAUCAUGGUUA&UAUCCAUGAUUUU------UUUAUUCC	3	0.999823841900373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN14171_c0_g1_1010_TPlot.pdf
TRINITY_DN14171_c0_g1:998	si_a327	TRINITY_DN14171_c0_g1	987	1006	998	-28.40	-19.60	0.690140845070423	7.5	1-2,1006-1005;4-18,1004-990;20-21,988-987	3-3,x-x[BULq];19-19,989-989[SIL]	((.(((((((((((((((-((&)).))))))))))))))).))	GGCCGAGGAGUGGAAGAA-CA&UGAUUUUUUUAUUCCUUGUCC	2	0.998248943405107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN14171_c0_g1_998_TPlot.pdf
TRINITY_DN14171_c0_g1:999	si_a326	TRINITY_DN14171_c0_g1	987	1014	999	-26.20	-17.20	0.656488549618321	17.5	1-8,1014-1007;9-19,1000-990;20-21,988-987	x-x,1006-1001[BULt];x-x,989-989[BULt]	((.(((((((((((......((((((((&))))))))------)))))))))))-))	GGCCGAGGAGUGGAAGAACAGAAAUCAU&AUGAUUUU------UUUAUUCCUUG-UC	2	0.999999868459029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN14171_c0_g1_999_TPlot.pdf
TRINITY_DN14172_c0_g1:385	si_s68	TRINITY_DN14172_c0_g1	374	394	385	-23.10	-16.00	0.692640692640693	8.5	5-20,390-375	1-4,394-391[UP5];21-21,374-374[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAGAGAAAAAAUAGAAAAAC&CAACUUCUAUUUUUUUUCUUU	2	0.999999982265916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN14172_c0_g1_385_TPlot.pdf
TRINITY_DN14174_c0_g2:38	si_a424	TRINITY_DN14174_c0_g2	27	47	38	-28.40	-18.50	0.651408450704225	14.5	7-10,41-38;12-21,36-27	1-6,47-42[UP5];11-11,37-37[SIL]	((((((((((.((((......&......)))).))))))))))	CAAUGGAUCCGGUAUGUGCAA&AAAUAAAUAUAGGAUCCGUUG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN14174_c0_g2_38_TPlot.pdf
TRINITY_DN14181_c0_g1:3158	si_a70	TRINITY_DN14181_c0_g1	3147	3167	3158	-23.90	-16.50	0.690376569037657	6	1-8,3167-3160;10-13,3158-3155;16-21,3152-3147	9-9,3159-3159[SIL];14-15,3154-3153[SIL]	((((((..((((.((((((((&)))))))).))))..))))))	GAUGGACUACAGCUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999999807106365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN14181_c0_g1_3158_TPlot.pdf
TRINITY_DN1418_c0_g1:1342	si_s809	TRINITY_DN1418_c0_g1	1331	1352	1342	-28.50	-18.70	0.656140350877193	10	1-3,1352-1350;4-16,1348-1336	x-x,1349-1349[BULt];17-21,1335-1331[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	CUUCCGAGGAGGUAAUGAUGGA&UCU-UCGUUACCUUUUCUUAAU	4	0.999999999985793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1418_c0_g1_1342_TPlot.pdf
TRINITY_DN1418_c0_g1:1390	si_a784	TRINITY_DN1418_c0_g1	1378	1399	1390	-24.70	-16.50	0.668016194331984	11	2-5,1398-1395;7-10,1393-1390;12-21,1387-1378	1-1,1399-1399[UP5];6-6,1394-1394[SIL];11-11,1389-1388[AILt]	((((((((((..((((.((((.&.)))).))))-.))))))))))	GAGGUGGAAAUCGUAGUGGAGG&ACUCUUCUAU-UUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1418_c0_g1_1390_TPlot.pdf
TRINITY_DN1418_c0_g1:3088	si_s374	TRINITY_DN1418_c0_g1	3077	3097	3088	-45.60	-30.80	0.675438596491228	9.5	2-8,3096-3090;11-13,3087-3085;15-21,3083-3077	1-1,3097-3097[UP5];9-10,3089-3088[SIL];14-14,3084-3084[SIL]	(((((((.(((..(((((((.&.)))))))..))).)))))))	AGGCGGAGGCGGCGGUGGUCU&CGAUCGCUCGCGUGUCCGCCU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN1418_c0_g1_3088_TPlot.pdf
TRINITY_DN14195_c0_g1:1161	si_a459	TRINITY_DN14195_c0_g1	1150	1173	1161	-23.20	-15.40	0.663793103448276	11	1-9,1173-1165;10-20,1161-1151	x-x,1164-1162[BULt];21-21,1150-1150[UP3]	.(((((((((((...(((((((((&)))))))))---))))))))))).	AUGCAUAUUGUAUAAUAUGAUAAU&GUUGUUAUA---UAUAAUAUGUAA	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN14195_c0_g1_1161_TPlot.pdf
TRINITY_DN14207_c0_g1:650	si_a347	TRINITY_DN14207_c0_g1	637	659	650	-23.50	-17.08	0.726808510638298	8.5	1-12,659-648;15-20,643-638	13-14,647-644[AILt];21-21,637-637[UP3]	.((((((....((((((((((((&))))))))))))--..)))))).	UGAUGGGCCGGUAAUAUUUUCGG&CCGAAAAUAUUA--AUUCUAUUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN14207_c0_g1_650_TPlot.pdf
TRINITY_DN14207_c0_g1:652	si_a345	TRINITY_DN14207_c0_g1	639	661	652	-26.90	-18.38	0.683271375464684	6	2-14,660-648;17-21,643-639	1-1,661-661[UP5];15-16,647-644[AILt]	(((((....(((((((((((((.&.)))))))))))))--..)))))	AUGGGCCGGUAAUAUUUUCGGGC&UCCCGAAAAUAUUA--AUUCUAU	0	0.02860027078609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN14207_c0_g1_652_TPlot.pdf
TRINITY_DN14207_c0_g1:653	si_a344	TRINITY_DN14207_c0_g1	640	663	653	-28.50	-18.88	0.662456140350877	7	1-2,663-662;3-15,660-648;18-21,643-640	x-x,661-661[BULt];16-17,647-644[AILt]	((((....(((((((((((((.((&))-)))))))))))))--..))))	UGGGCCGGUAAUAUUUUCGGGCAC&GU-CCCGAAAAUAUUA--AUUCUA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN14207_c0_g1_653_TPlot.pdf
TRINITY_DN14207_c0_g1:654	si_a343	TRINITY_DN14207_c0_g1	643	664	654	-28.80	-19.00	0.659722222222222	7	1-3,664-662;4-16,660-648	x-x,661-661[BULt];17-21,647-643[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	GCCGGUAAUAUUUUCGGGCACA&UGU-CCCGAAAAUAUUAAUUCU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN14207_c0_g1_654_TPlot.pdf
TRINITY_DN14207_c0_g1:655	si_a342	TRINITY_DN14207_c0_g1	644	665	655	-28.20	-19.10	0.677304964539007	7	2-4,664-662;5-17,660-648	1-1,665-665[UP5];x-x,661-661[BULt];18-21,647-644[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	CCGGUAAUAUUUUCGGGCACAC&UUGU-CCCGAAAAUAUUAAUUC	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a342_TRINITY_DN14207_c0_g1_655_TPlot.pdf
TRINITY_DN14207_c0_g1:656	si_a341	TRINITY_DN14207_c0_g1	645	666	656	-27.80	-19.10	0.68705035971223	8	3-5,664-662;6-18,660-648	1-2,666-665[UP5];x-x,661-661[BULt];19-21,647-645[UP3]	...(((((((((((((.(((..&..)))-)))))))))))))...	CGGUAAUAUUUUCGGGCACACU&CUUGU-CCCGAAAAUAUUAAUU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN14207_c0_g1_656_TPlot.pdf
TRINITY_DN14208_c1_g1:273	si_a898	TRINITY_DN14208_c1_g1	262	282	273	-20.50	-15.20	0.741463414634146	8	1-16,282-267	17-21,266-262[UP3]	.....((((((((((((((((&)))))))))))))))).....	GCAGUUAUUAUUUGUUAUUGC&GUAAUAAUAAGUAAUAUAAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN14208_c1_g1_273_TPlot.pdf
TRINITY_DN14208_c1_g1:274	si_a897	TRINITY_DN14208_c1_g1	263	283	274	-21.20	-15.30	0.721698113207547	8	2-17,282-267	1-1,283-283[UP5];18-21,266-263[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAGUUAUUAUUUGUUAUUGCA&AGUAAUAAUAAGUAAUAUAAA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN14208_c1_g1_274_TPlot.pdf
TRINITY_DN14208_c1_g1:275	si_a896	TRINITY_DN14208_c1_g1	264	284	275	-21.60	-15.30	0.708333333333333	8.5	3-18,282-267	1-2,284-283[UP5];19-21,266-264[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGUUAUUAUUUGUUAUUGCAC&UAGUAAUAAUAAGUAAUAUAA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN14208_c1_g1_275_TPlot.pdf
TRINITY_DN14208_c1_g1:276	si_a895	TRINITY_DN14208_c1_g1	265	285	276	-21.70	-15.30	0.705069124423963	9.5	4-19,282-267	1-3,285-283[UP5];20-21,266-265[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUUAUUAUUUGUUAUUGCACA&AUAGUAAUAAUAAGUAAUAUA	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN14208_c1_g1_276_TPlot.pdf
TRINITY_DN14208_c5_g1:218	si_s873	TRINITY_DN14208_c5_g1	207	228	218	-30.30	-20.50	0.676567656765677	8.5	1-7,228-222;9-20,219-208	8-8,221-220[AILt];21-21,207-207[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	GGUUUUUAGUUUUUCAGGCUGG&CCGGUCU-UAGAACUAAAAAUA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s873_TRINITY_DN14208_c5_g1_218_TPlot.pdf
TRINITY_DN14208_c5_g1:219	si_s872	TRINITY_DN14208_c5_g1	208	229	219	-30.70	-21.60	0.703583061889251	7.5	1-8,229-222;10-21,219-208	9-9,221-220[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	GUUUUUAGUUUUUCAGGCUGGU&ACCGGUCU-UAGAACUAAAAAU	0	0.0198129726207807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN14208_c5_g1_219_TPlot.pdf
TRINITY_DN1420_c0_g2:1919	si_a758	TRINITY_DN1420_c0_g2	1907	1927	1919	-34.00	-22.40	0.658823529411765	9.5	1-5,1927-1923;8-10,1921-1919;11-19,1917-1909	6-7,1922-1922[AILq];x-x,1918-1918[BULt];20-21,1908-1907[UP3]	..(((((((((.(((.-(((((&)))))..)))-)))))))))..	ACAUCAAGAGCACCAU-GGAGG&CCUCCUUUGG-GUUUUUGAUUG	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1420_c0_g2_1919_TPlot.pdf
TRINITY_DN1420_c0_g2:1921	si_a756	TRINITY_DN1420_c0_g2	1909	1929	1921	-33.10	-22.40	0.676737160120846	10	3-7,1927-1923;10-12,1921-1919;13-21,1917-1909	1-2,1929-1928[UP5];8-9,1922-1922[AILq];x-x,1918-1918[BULt]	(((((((((.(((.-(((((..&..)))))..)))-)))))))))	AUCAAGAGCACCAU-GGAGGAU&AACCUCCUUUGG-GUUUUUGAU	4	0.999998571403533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1420_c0_g2_1921_TPlot.pdf
TRINITY_DN1420_c0_g2:2042	si_a407	TRINITY_DN1420_c0_g2	2031	2052	2042	-19.80	-13.40	0.676767676767677	9.5	2-6,2051-2047;7-17,2045-2035	1-1,2052-2052[UP5];x-x,2046-2046[BULt];18-21,2034-2031[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	AGAGGAAUAUGAGCACAAACAG&UUGUUU-UGUUUAUAUUUAAAU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1420_c0_g2_2042_TPlot.pdf
TRINITY_DN1420_c0_g2:2044	si_a405	TRINITY_DN1420_c0_g2	2033	2054	2044	-19.80	-13.40	0.676767676767677	11	4-8,2051-2047;9-19,2045-2035	1-3,2054-2052[UP5];x-x,2046-2046[BULt];20-21,2034-2033[UP3]	..(((((((((((.(((((...&...)))))-)))))))))))..	AGGAAUAUGAGCACAAACAGAA&AAUUGUUU-UGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1420_c0_g2_2044_TPlot.pdf
TRINITY_DN14214_c2_g1:1417	si_a80	TRINITY_DN14214_c2_g1	1406	1426	1417	-22.10	-15.30	0.692307692307692	5	2-15,1425-1412;17-18,1410-1409	1-1,1426-1426[UP5];16-16,1411-1411[SIL];19-21,1408-1406[UP3]	...((.((((((((((((((.&.)))))))))))))).))...	UACUCAUAAUAAUGAAAAACC&UGUUUUUCAUUAUUAAGAAAA	0	0.186266512068004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN14214_c2_g1_1417_TPlot.pdf
TRINITY_DN14214_c2_g1:1418	si_a79	TRINITY_DN14214_c2_g1	1407	1427	1418	-22.20	-15.30	0.689189189189189	6	3-16,1425-1412;18-19,1410-1409	1-2,1427-1426[UP5];17-17,1411-1411[SIL];20-21,1408-1407[UP3]	..((.((((((((((((((..&..)))))))))))))).))..	ACUCAUAAUAAUGAAAAACCC&UUGUUUUUCAUUAUUAAGAAA	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN14214_c2_g1_1418_TPlot.pdf
TRINITY_DN14216_c0_g1:2548	si_s79	TRINITY_DN14216_c0_g1	2538	2557	2548	-26.20	-17.90	0.683206106870229	5	2-14,2556-2544;16-17,2542-2541;19-21,2540-2538	1-1,2557-2557[UP5];15-15,2543-2543[SIL];18-18,x-x[BULq]	(((-((.(((((((((((((.&.))))))))))))).)).)))	AAG-AGUGGGGAAAGAAAGAG&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN14216_c0_g1_2548_TPlot.pdf
TRINITY_DN14216_c0_g1:2550	si_s77	TRINITY_DN14216_c0_g1	2539	2559	2550	-25.50	-20.20	0.792156862745098	5.5	1-16,2559-2544;18-20,2542-2540	17-17,2543-2543[SIL];21-21,2539-2539[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AGAGUGGGGAAAGAAAGAGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.999766846148548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN14216_c0_g1_2550_TPlot.pdf
TRINITY_DN14216_c0_g1:2556	si_s71	TRINITY_DN14216_c0_g1	2545	2565	2556	-25.70	-17.00	0.66147859922179	13.5	7-21,2559-2545	1-6,2565-2560[UP5]	(((((((((((((((......&......)))))))))))))))	GGGAAAGAAAGAGAAAUAAAU&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14216_c0_g1_2556_TPlot.pdf
TRINITY_DN14216_c0_g1:2806	si_a486	TRINITY_DN14216_c0_g1	2795	2815	2806	-24.90	-16.70	0.670682730923695	11.5	4-11,2812-2805;13-20,2803-2796	1-3,2815-2813[UP5];12-12,2804-2804[SIL];21-21,2795-2795[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UAAACGACGGGUUCUGUGCUG&UUAUAUAGAAUAUGUCGUUUU	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN14216_c0_g1_2806_TPlot.pdf
TRINITY_DN14216_c0_g1:2822	si_a412	TRINITY_DN14216_c0_g1	2811	2831	2822	-18.30	-12.30	0.672131147540984	12	3-16,2829-2816	1-2,2831-2830[UP5];17-21,2815-2811[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGCUGAUUUGGAUAUGAGCUG&UUGUUUAUAUUUAAAUAAAUA	4	0.999997796202497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN14216_c0_g1_2822_TPlot.pdf
TRINITY_DN14228_c0_g1:109	si_a411	TRINITY_DN14228_c0_g1	98	121	109	-17.90	-11.90	0.664804469273743	10	1-5,121-117;6-19,113-100	x-x,116-114[BULt];20-21,99-98[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	AAUUAUUUAGAUAUAGUAUACAAA&UUUGU---UUAUAUUUAAAUAAAU	4	0.999999999733605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN14228_c0_g1_109_TPlot.pdf
TRINITY_DN14228_c0_g1:110	si_a410	TRINITY_DN14228_c0_g1	99	122	110	-17.80	-12.10	0.679775280898876	9.5	2-6,121-117;7-20,113-100	1-1,122-122[UP5];x-x,116-114[BULt];21-21,99-99[UP3]	.((((((((((((((...(((((.&.)))))---)))))))))))))).	AUUAUUUAGAUAUAGUAUACAAAU&UUUUGU---UUAUAUUUAAAUAAA	0	0.461715326058614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN14228_c0_g1_110_TPlot.pdf
TRINITY_DN1422_c0_g1:1325	si_a548	TRINITY_DN1422_c0_g1	1314	1334	1325	-27.20	-17.80	0.654411764705882	5.5	1-3,1334-1332;5-17,1330-1318;20-21,1315-1314	4-4,1331-1331[SIL];18-19,1317-1316[SIL]	((..(((((((((((((.(((&))).)))))))))))))..))	GAUUUGAAGAGAUAGAUGGAA&UUCAAUCUAUUUCUUUAUCUC	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN1422_c0_g1_1325_TPlot.pdf
TRINITY_DN1422_c0_g1:205	si_a794	TRINITY_DN1422_c0_g1	194	214	205	-28.60	-18.60	0.65034965034965	11	2-7,213-208;10-18,205-197	1-1,214-214[UP5];8-9,207-206[SIL];19-21,196-194[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	AAUGGAUUGGAGUUUGGGAAU&UUUUCUAUUUUCCAAUCCGAA	2	0.999625851716806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1422_c0_g1_205_TPlot.pdf
TRINITY_DN1422_c0_g1:206	si_a793	TRINITY_DN1422_c0_g1	195	215	206	-28.50	-18.60	0.652631578947368	12	3-8,213-208;11-19,205-197	1-2,215-214[UP5];9-10,207-206[SIL];20-21,196-195[UP3]	..(((((((((..((((((..&..))))))..)))))))))..	AUGGAUUGGAGUUUGGGAAUA&UUUUUCUAUUUUCCAAUCCGA	2	0.999763926147321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN1422_c0_g1_206_TPlot.pdf
TRINITY_DN1422_c0_g1:208	si_a791	TRINITY_DN1422_c0_g1	197	217	208	-26.50	-17.90	0.675471698113208	13.5	5-10,213-208;13-21,205-197	1-4,217-214[UP5];11-12,207-206[SIL]	(((((((((..((((((....&....))))))..)))))))))	GGAUUGGAGUUUGGGAAUACU&UAUUUUUCUAUUUUCCAAUCC	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1422_c0_g1_208_TPlot.pdf
TRINITY_DN1422_c0_g1:430	si_a789	TRINITY_DN1422_c0_g1	419	439	430	-24.80	-18.00	0.725806451612903	8	1-4,439-436;7-19,433-421	5-6,435-434[SIL];20-21,420-419[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	GGUGGAAAAUGGAAGUCUAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1422_c0_g1_430_TPlot.pdf
TRINITY_DN1422_c0_g1:434	si_a785	TRINITY_DN1422_c0_g1	423	443	434	-25.90	-18.60	0.718146718146718	6.5	2-8,442-436;11-21,433-423	1-1,443-443[UP5];9-10,435-434[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	GAAAAUGGAAGUCUAGAAGAC&CUCUUCUAUUUUUCUAUUUUC	4	0.999999798976133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1422_c0_g1_434_TPlot.pdf
TRINITY_DN1422_c0_g1:594	si_a463	TRINITY_DN1422_c0_g1	583	603	594	-19.70	-13.30	0.6751269035533	7	1-13,603-591;15-17,589-587	14-14,590-590[SIL];18-21,586-583[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UGCUUUAGAUAUUAUAUGUGA&UUAUAUAUAAUAUGUAAUUAU	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1422_c0_g1_594_TPlot.pdf
TRINITY_DN1422_c0_g1:866	si_s75	TRINITY_DN1422_c0_g1	853	875	866	-24.00	-17.10	0.7125	8.5	3-17,873-859;18-20,856-854	1-2,875-874[UP5];x-x,858-857[BULt];21-21,853-853[UP3]	.(((..(((((((((((((((..&..)))))))))))))))--))).	UGAAUUGGGAAGGAAAAAGAAAA&UAUUUUUUUUCUUUCCU--UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1422_c0_g1_866_TPlot.pdf
TRINITY_DN1422_c0_g1:944	si_s74	TRINITY_DN1422_c0_g1	930	953	944	-25.00	-21.00	0.84	8	1-14,953-940;15-21,936-930	x-x,939-937[BULt]	(((((((...((((((((((((((&))))))))))))))---)))))))	GGGAGGAUAUAAGAGAGGAAGUAG&CUAUUUUUUUUCUU---UCCUUUC	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1422_c0_g1_944_TPlot.pdf
TRINITY_DN1422_c0_g1:945	si_s73	TRINITY_DN1422_c0_g1	931	954	945	-24.00	-20.00	0.833333333333333	8	1-15,954-940;16-21,936-931	x-x,939-937[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GGAGGAUAUAAGAGAGGAAGUAGA&UCUAUUUUUUUUCUU---UCCUUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1422_c0_g1_945_TPlot.pdf
TRINITY_DN1422_c0_g1:948	si_s70	TRINITY_DN1422_c0_g1	934	957	948	-25.80	-17.10	0.662790697674419	11.5	4-18,954-940;19-21,936-934	1-3,957-955[UP5];x-x,939-937[BULt]	(((...(((((((((((((((...&...)))))))))))))))---)))	GGAUAUAAGAGAGGAAGUAGAUAC&ACUUCUAUUUUUUUUCUU---UCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1422_c0_g1_948_TPlot.pdf
TRINITY_DN14230_c0_g1:714	si_a234	TRINITY_DN14230_c0_g1	703	726	714	-31.30	-21.30	0.680511182108626	11.5	1-6,726-721;7-10,717-714;13-21,711-703	x-x,720-718[BULt];11-12,713-712[SIL]	(((((((((..((((...((((((&))))))---))))..)))))))))	GGGAUCGAGCGGAUUUACAUGGAA&UUCUAU---AAUCAAUUCGAUCCC	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a234_TRINITY_DN14230_c0_g1_714_TPlot.pdf
TRINITY_DN14233_c0_g2:97	si_s758	TRINITY_DN14233_c0_g2	86	106	97	-23.50	-16.20	0.68936170212766	11.5	6-19,101-88	1-5,106-102[UP5];20-21,87-86[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUUUAAUUGUUGUUGUAUUCU&UUAAAACAACAACGAUUAAUU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN14233_c0_g2_97_TPlot.pdf
TRINITY_DN1423_c0_g1:1211	si_a761	TRINITY_DN1423_c0_g1	1200	1220	1211	-30.10	-20.30	0.674418604651163	7.5	2-15,1219-1206	1-1,1220-1220[UP5];16-21,1205-1200[UP3]	......((((((((((((((.&.))))))))))))))......	UUUAUCUCGAAAACCCAAAGA&CCUUUGGGUUUUUGAUUGAUU	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN1423_c0_g1_1211_TPlot.pdf
TRINITY_DN14247_c0_g1:653	si_a1	TRINITY_DN14247_c0_g1	642	662	653	-28.30	-18.50	0.653710247349823	9	3-16,660-647	1-2,662-661[UP5];17-21,646-642[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGACACUCUUCAGUUUCAAGU&AAUUGAAAUUGAAGAGAAAGC	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN14247_c0_g1_653_TPlot.pdf
TRINITY_DN1424_c0_g1:116	si_a459	TRINITY_DN1424_c0_g1	105	125	116	-23.20	-15.10	0.650862068965517	8.5	1-3,125-123;5-17,121-109	4-4,122-122[SIL];18-21,108-105[UP3]	....(((((((((((((.(((&))).)))))))))))))....	GGUGGUAUUGUAUAUAAGAGC&GUUGUUAUAUAUAAUAUGUAA	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN1424_c0_g1_116_TPlot.pdf
TRINITY_DN14256_c0_g1:489	si_s312	TRINITY_DN14256_c0_g1	474	498	489	-29.00	-19.10	0.658620689655173	13.5	5-15,494-484;16-21,479-474	1-4,498-495[UP5];x-x,483-480[BULt]	((((((....(((((((((((....&....)))))))))))----))))))	UGGCAAAAACGGAGGACAGGAGGGA&AAAAUUCUGUCCUUC----UUGUUA	3	0.999999999999537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN14256_c0_g1_489_TPlot.pdf
TRINITY_DN1425_c0_g1:55	si_s490	TRINITY_DN1425_c0_g1	44	64	55	-17.80	-13.30	0.747191011235955	5.5	3-6,62-59;8-21,57-44	1-2,64-63[UP5];7-7,58-58[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UUUUGUUUGUAUUUUAAUAUU&UUUAUUUAAAUAUAAACAAAA	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN1425_c0_g1_55_TPlot.pdf
TRINITY_DN14260_c0_g1:172	si_a784	TRINITY_DN14260_c0_g1	161	182	172	-24.70	-16.30	0.659919028340081	10.5	1-3,182-180;4-15,178-167	x-x,179-179[BULt];16-21,166-161[UP3]	......((((((((((((.(((&)))-))))))))))))......	GAAGCCGAGAGAUGGAAGCAGU&ACU-CUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14260_c0_g1_172_TPlot.pdf
TRINITY_DN14260_c0_g1:475	si_s811	TRINITY_DN14260_c0_g1	464	488	475	-26.40	-17.50	0.662878787878788	15	1-5,488-484;6-16,479-469	x-x,483-480[BULt];17-21,468-464[UP3]	.....(((((((((((....(((((&)))))----))))))))))).....	UGCAGAAGAAGAGGUAGACCGCGAA&UUCGU----UACCUUUUCUUAAUAA	4	0.999999676823731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN14260_c0_g1_475_TPlot.pdf
TRINITY_DN14260_c0_g1:479	si_s807	TRINITY_DN14260_c0_g1	468	492	479	-28.90	-20.80	0.719723183391003	15.5	4-9,489-484;10-20,479-469	1-3,492-490[UP5];x-x,483-480[BULt];21-21,468-468[UP3]	.(((((((((((....((((((...&...))))))----))))))))))).	GAAGAAGAGGUAGACCGCGAAGGAA&UAUCUUCGU----UACCUUUUCUUA	2	0.978364371173897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN14260_c0_g1_479_TPlot.pdf
TRINITY_DN14260_c0_g1:486	si_s804	TRINITY_DN14260_c0_g1	471	495	486	-27.90	-18.20	0.652329749103943	20.5	7-12,489-484;13-21,479-471	1-6,495-490[UP5];x-x,483-480[BULt]	(((((((((....((((((......&......))))))----)))))))))	GAAGAGGUAGACCGCGAAGGAAGUA&UUUUAUCUUCGU----UACCUUUUC	4	0.999999999999929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN14260_c0_g1_486_TPlot.pdf
TRINITY_DN14264_c0_g1:74	si_a478	TRINITY_DN14264_c0_g1	63	83	74	-21.30	-14.10	0.661971830985915	11.5	4-16,80-68	1-3,83-81[UP5];17-21,67-63[UP3]	.....(((((((((((((...&...))))))))))))).....	ACACCCUGUAUAACGAUAUUC&AAUUAUUGUUAUAUAGAAUAU	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN14264_c0_g1_74_TPlot.pdf
TRINITY_DN1426_c0_g2:447	si_a404	TRINITY_DN1426_c0_g2	435	456	447	-21.70	-14.40	0.663594470046083	6	4-13,453-444;14-21,442-435	1-3,456-454[UP5];x-x,443-443[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	UAAAUAUAUAACAAAACAAAAG&GAAUUGUUUUGUU-UAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1426_c0_g2_447_TPlot.pdf
TRINITY_DN14276_c0_g2:937	si_s80	TRINITY_DN14276_c0_g2	925	945	937	-28.20	-21.50	0.762411347517731	4	1-8,945-938;10-13,937-934;14-21,932-925	9-9,x-x[BULq];x-x,933-933[BULt]	((((((((.((((-((((((((&)))))))).))))-))))))))	GAAGAAGACAAGG-AAGAAGAA&UUUUUCUUUCCUU-UCUUCUUC	4	0.99999995260776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN14276_c0_g2_937_TPlot.pdf
TRINITY_DN14276_c0_g2:942	si_a326	TRINITY_DN14276_c0_g2	931	951	942	-26.20	-18.60	0.709923664122137	9	4-11,948-941;13-21,939-931	1-3,951-949[UP5];12-12,940-940[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GACAAGGAAGAAGAAAGUGCU&AUGAUUUUUUUAUUCCUUGUC	2	0.989088653046503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN14276_c0_g2_942_TPlot.pdf
TRINITY_DN14277_c0_g1:1222	si_s319	TRINITY_DN14277_c0_g1	1211	1231	1222	-31.30	-20.40	0.651757188498402	8	1-13,1231-1219	14-21,1218-1211[UP3]	........(((((((((((((&)))))))))))))........	UAUGAGAGAACAAGAAGGACA&UGUCCUUCUUGUUACAAACAU	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN14277_c0_g1_1222_TPlot.pdf
TRINITY_DN14279_c0_g2:168	si_s724	TRINITY_DN14279_c0_g2	156	177	168	-31.70	-22.60	0.712933753943218	5.5	1-11,177-167;12-21,165-156	x-x,166-166[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	ACUCGUUUGGUGUAAUGUCUUU&AAAGAUAUUAU-CUAGACGGGU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN14279_c0_g2_168_TPlot.pdf
TRINITY_DN1427_c0_g1:238	si_a406	TRINITY_DN1427_c0_g1	227	247	238	-19.80	-12.90	0.651515151515151	10	1-8,247-240;10-16,238-232	9-9,239-239[SIL];17-21,231-227[UP3]	.....(((((((.((((((((&)))))))).))))))).....	CAGAUGUGUAGAGAAAACAGU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1427_c0_g1_238_TPlot.pdf
TRINITY_DN14280_c0_g1:318	si_a790	TRINITY_DN14280_c0_g1	307	327	318	-25.80	-16.80	0.651162790697674	9.5	1-2,327-326;4-5,324-323;7-19,321-309	3-3,325-325[SIL];6-6,322-322[SIL];20-21,308-307[UP3]	..(((((((((((((.((.((&)).)).)))))))))))))..	AUUUGGAGAGUAGAAUGAAGG&CUAUUUUUCUAUUUUCCAAUC	4	0.999999998067349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN14280_c0_g1_318_TPlot.pdf
TRINITY_DN14280_c3_g1:252	si_s66	TRINITY_DN14280_c3_g1	240	261	252	-26.30	-17.10	0.650190114068441	10	1-10,261-252;15-20,246-241	11-14,251-247[AILt];21-21,240-240[UP3]	.((((((.....((((((((((&))))))))))-....)))))).	UGAAAGGUGUGAAGAAGUUGCU&AGCAACUUCU-AUUUUUUUUCU	4	0.999999999992352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN14280_c3_g1_252_TPlot.pdf
TRINITY_DN14281_c0_g1:19	si_a546	TRINITY_DN14281_c0_g1	5	28	19	-28.60	-20.32	0.71048951048951	6	1-14,28-15;17-21,9-5	15-16,14-10[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN14281_c0_g1_19_TPlot.pdf
TRINITY_DN14281_c0_g1:2942	si_a332	TRINITY_DN14281_c0_g1	2931	2951	2942	-30.60	-20.50	0.669934640522876	6	2-6,2950-2946;8-8,2944-2944;10-20,2942-2932	1-1,2951-2951[UP5];7-7,2945-2945[SIL];9-9,2943-2943[SIL];21-21,2931-2931[UP3]	.(((((((((((.(.(((((.&.))))).).))))))))))).	CUUCGGGACAAGUAUUAAAAG&UUUUUAUUCCUUGUCCCGAAA	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN14281_c0_g1_2942_TPlot.pdf
TRINITY_DN14281_c0_g1:2944	si_a330	TRINITY_DN14281_c0_g1	2933	2953	2944	-30.50	-21.90	0.718032786885246	5	1-8,2953-2946;10-10,2944-2944;12-21,2942-2933	9-9,2945-2945[SIL];11-11,2943-2943[SIL]	((((((((((.(.((((((((&)))))))).).))))))))))	UCGGGACAAGUAUUAAAAGAA&UUUUUUUAUUCCUUGUCCCGA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN14281_c0_g1_2944_TPlot.pdf
TRINITY_DN14281_c0_g1:3003	si_s677	TRINITY_DN14281_c0_g1	2992	3012	3003	-27.10	-18.10	0.66789667896679	8	2-7,3011-3006;10-20,3003-2993	1-1,3012-3012[UP5];8-9,3005-3004[SIL];21-21,2992-2992[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	CGAACUCGUGUUGGUGUAAUA&GAUUAUAGAAACAUGAGUUUA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s677_TRINITY_DN14281_c0_g1_3003_TPlot.pdf
TRINITY_DN14281_c0_g1:3004	si_s676	TRINITY_DN14281_c0_g1	2993	3013	3004	-27.40	-17.90	0.653284671532847	9	3-8,3011-3006;11-21,3003-2993	1-2,3013-3012[UP5];9-10,3005-3004[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GAACUCGUGUUGGUGUAAUAU&UGAUUAUAGAAACAUGAGUUU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s676_TRINITY_DN14281_c0_g1_3004_TPlot.pdf
TRINITY_DN14281_c0_g2:3199	si_s82	TRINITY_DN14281_c0_g2	3188	3211	3199	-28.90	-19.84	0.686505190311419	9.5	1-8,3211-3204;10-21,3199-3188	9-9,3203-3200[AILt]	((((((((((((....((((((((&))))))))---.))))))))))))	AAGAGGAAGAAAAGAAGAAGGAAA&UUUCUUUC---CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN14281_c0_g2_3199_TPlot.pdf
TRINITY_DN14281_c0_g2:3204	si_s80	TRINITY_DN14281_c0_g2	3190	3213	3204	-28.20	-19.44	0.68936170212766	9.5	1-10,3213-3204;12-21,3199-3190	11-11,3203-3200[AILt]	((((((((((....((((((((((&))))))))))---.))))))))))	GAGGAAGAAAAGAAGAAGGAAAAA&UUUUUCUUUC---CUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN14281_c0_g2_3204_TPlot.pdf
TRINITY_DN14291_c0_g1:1371	si_a875	TRINITY_DN14291_c0_g1	1358	1380	1371	-27.10	-19.90	0.734317343173432	6	2-15,1379-1366;16-20,1363-1359	1-1,1380-1380[UP5];x-x,1365-1364[BULt];21-21,1358-1358[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	GAUUGAAAUUGUAACUGAAUCUC&AAGAUUUAGUUGCAA--UCAAUA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN14291_c0_g1_1371_TPlot.pdf
TRINITY_DN14291_c0_g1:1375	si_a871	TRINITY_DN14291_c0_g1	1364	1384	1375	-26.40	-17.90	0.678030303030303	11.5	6-20,1379-1365	1-5,1384-1380[UP5];21-21,1364-1364[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAUUGUAACUGAAUCUCAAUU&AUUAAAGAUUUAGUUGCAAUC	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN14291_c0_g1_1375_TPlot.pdf
TRINITY_DN14291_c0_g1:1376	si_a870	TRINITY_DN14291_c0_g1	1365	1385	1376	-24.80	-17.90	0.721774193548387	12.5	7-21,1379-1365	1-6,1385-1380[UP5]	(((((((((((((((......&......)))))))))))))))	AUUGUAACUGAAUCUCAAUUG&UAUUAAAGAUUUAGUUGCAAU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN14291_c0_g1_1376_TPlot.pdf
TRINITY_DN1429_c0_g1:1680	si_a625	TRINITY_DN1429_c0_g1	1670	1689	1680	-30.60	-21.00	0.686274509803922	6.5	1-10,1689-1680;12-17,1679-1674	11-11,x-x[BULq];18-21,1673-1670[UP3]	....((((((-((((((((((&)))))))))).))))))....	GAUCUCGAUA-AAUACGCCUA&UAGGCGUAUUAUGUCGAUUUU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN1429_c0_g1_1680_TPlot.pdf
TRINITY_DN1429_c0_g1:1681	si_a624	TRINITY_DN1429_c0_g1	1671	1690	1681	-32.30	-21.20	0.656346749226006	6.5	2-11,1689-1680;13-18,1679-1674	1-1,1690-1690[UP5];12-12,x-x[BULq];19-21,1673-1671[UP3]	...((((((-((((((((((.&.)))))))))).))))))...	AUCUCGAUA-AAUACGCCUAU&CUAGGCGUAUUAUGUCGAUUU	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN1429_c0_g1_1681_TPlot.pdf
TRINITY_DN142_c0_g1:150	si_a712	TRINITY_DN142_c0_g1	140	159	150	-28.20	-20.40	0.723404255319149	4.5	1-11,159-149;13-19,148-142	12-12,x-x[BULq];20-21,141-140[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	AUGUAACGG-UAUUUUGGAAU&AUUCCAAAAUAAUCGUUACUC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN142_c0_g1_150_TPlot.pdf
TRINITY_DN142_c0_g1:151	si_a711	TRINITY_DN142_c0_g1	141	160	151	-27.90	-23.60	0.845878136200717	2.5	1-12,160-149;14-20,148-142	13-13,x-x[BULq];21-21,141-141[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	UGUAACGG-UAUUUUGGAAUG&CAUUCCAAAAUAAUCGUUACU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN142_c0_g1_151_TPlot.pdf
TRINITY_DN142_c0_g1:152	si_a710	TRINITY_DN142_c0_g1	142	161	152	-28.00	-23.40	0.835714285714286	2.5	2-13,160-149;15-21,148-142	1-1,161-161[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	GUAACGG-UAUUUUGGAAUGG&ACAUUCCAAAAUAAUCGUUAC	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a710_TRINITY_DN142_c0_g1_152_TPlot.pdf
TRINITY_DN142_c0_g1:153	si_a709	TRINITY_DN142_c0_g1	143	162	153	-26.60	-20.50	0.770676691729323	4.5	3-14,160-149;16-21,148-143	1-2,162-161[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UAACGG-UAUUUUGGAAUGGU&UACAUUCCAAAAUAAUCGUUA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN142_c0_g1_153_TPlot.pdf
TRINITY_DN142_c0_g1:3053	si_a410	TRINITY_DN142_c0_g1	3042	3062	3053	-17.80	-11.70	0.657303370786517	10	1-14,3062-3049	15-21,3048-3042[UP3]	.......((((((((((((((&)))))))))))))).......	UAAUGAAGAAUAUGAACAAGG&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN142_c0_g1_3053_TPlot.pdf
TRINITY_DN142_c0_g1:3099	si_s78	TRINITY_DN142_c0_g1	3086	3108	3099	-26.20	-18.50	0.706106870229008	6	1-10,3108-3099;11-15,3096-3092;17-21,3090-3086	x-x,3098-3097[BULt];16-16,3091-3091[SIL]	(((((.(((((..((((((((((&))))))))))--))))).)))))	AGAAGUGGGGACAAAGAAAAAAA&UUUUUUUCUU--UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN142_c0_g1_3099_TPlot.pdf
TRINITY_DN142_c0_g1:380	si_s68	TRINITY_DN142_c0_g1	369	390	380	-23.10	-16.00	0.692640692640693	6	1-8,390-383;9-9,381-381;11-20,379-370	x-x,382-382[BULt];10-10,380-380[SIL];21-21,369-369[UP3]	.((((((((((.(.((((((((&))))))))-).)))))))))).	CAAGAAGGAAAUUAAGAAGUUG&CAACUUCU-AUUUUUUUUCUUU	0	0.522857127386157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN142_c0_g1_380_TPlot.pdf
TRINITY_DN142_c0_g1:381	si_s67	TRINITY_DN142_c0_g1	370	391	381	-25.60	-20.30	0.79296875	5	1-9,391-383;10-10,381-381;12-21,379-370	x-x,382-382[BULt];11-11,380-380[SIL]	((((((((((.(.(((((((((&)))))))))-).))))))))))	AAGAAGGAAAUUAAGAAGUUGC&GCAACUUCU-AUUUUUUUUCUU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN142_c0_g1_381_TPlot.pdf
TRINITY_DN142_c0_g1:383	si_s66	TRINITY_DN142_c0_g1	371	392	383	-26.30	-19.60	0.745247148288973	6	2-10,391-383;11-11,381-381;13-21,379-371	1-1,392-392[UP5];x-x,382-382[BULt];12-12,380-380[SIL]	(((((((((.(.(((((((((.&.)))))))))-).)))))))))	AGAAGGAAAUUAAGAAGUUGCA&AGCAACUUCU-AUUUUUUUUCU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN142_c0_g1_383_TPlot.pdf
TRINITY_DN142_c0_g1:384	si_s65	TRINITY_DN142_c0_g1	372	393	384	-26.00	-18.30	0.703846153846154	7	3-11,391-383;12-12,381-381;14-21,379-372	1-2,393-392[UP5];x-x,382-382[BULt];13-13,380-380[SIL]	((((((((.(.(((((((((..&..)))))))))-).))))))))	GAAGGAAAUUAAGAAGUUGCAA&UAGCAACUUCU-AUUUUUUUUC	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN142_c0_g1_384_TPlot.pdf
TRINITY_DN142_c0_g1:385	si_s64	TRINITY_DN142_c0_g1	372	394	385	-24.10	-17.20	0.713692946058091	10.5	4-12,391-383;13-21,380-372	1-3,394-392[UP5];x-x,382-381[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	GAAGGAAAUUAAGAAGUUGCAAA&UUAGCAACUUCU--AUUUUUUUU	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN142_c0_g1_385_TPlot.pdf
TRINITY_DN142_c0_g1:498	si_s744	TRINITY_DN142_c0_g1	486	507	498	-28.90	-23.30	0.806228373702422	4.5	2-15,506-493;16-21,491-486	1-1,507-507[UP5];x-x,492-492[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	GUUUUGAAGGUCAGUCUAUUUU&UGAAUAGAUUGACCU-UAAAAC	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s744_TRINITY_DN142_c0_g1_498_TPlot.pdf
TRINITY_DN14300_c0_g2:47	si_a585	TRINITY_DN14300_c0_g2	36	56	47	-31.60	-22.50	0.712025316455696	6.5	1-16,56-41	17-21,40-36[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGGCGGUCCUUUUUGUUACAG&UUGUAACAAGAAGGACAGAAU	0	0.00995604775382863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN14300_c0_g2_47_TPlot.pdf
TRINITY_DN1430_c2_g1:333	si_a25	TRINITY_DN1430_c2_g1	320	343	333	-26.50	-17.90	0.675471698113208	13.5	2-7,342-337;8-12,335-331;13-21,328-320	1-1,343-343[UP5];x-x,336-336[BULt];x-x,330-329[BULt]	(((((((((..(((((.((((((.&.))))))-)))))--)))))))))	GGUCUUAGGUUGCUGAUGAGUGGG&UUUAUUU-UUAGU--UCUAAGACC	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN1430_c2_g1_333_TPlot.pdf
TRINITY_DN14311_c1_g1:1321	si_a280	TRINITY_DN14311_c1_g1	1310	1330	1321	-32.10	-20.90	0.651090342679128	10	3-4,1328-1327;7-16,1324-1315;18-20,1313-1311	1-2,1330-1329[UP5];5-6,1326-1325[SIL];17-17,1314-1314[SIL];21-21,1310-1310[UP3]	.(((.((((((((((..((..&..))..)))))))))).))).	UGAUGCAGGCGAUCUGGUCUU&ACGAAAAGAUCGCUUGGAUUU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN14311_c1_g1_1321_TPlot.pdf
TRINITY_DN14312_c1_g1:469	si_s888	TRINITY_DN14312_c1_g1	457	478	469	-26.80	-17.70	0.66044776119403	12	6-14,473-465;15-21,463-457	1-5,478-474[UP5];x-x,464-464[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	GGGGGAGCAGCCUAUUUUUACG&AAAAUAAAUAGGCU-UUCUCUU	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN14312_c1_g1_469_TPlot.pdf
TRINITY_DN14314_c0_g1:474	si_s693	TRINITY_DN14314_c0_g1	463	483	474	-23.90	-15.80	0.661087866108787	5.5	1-12,483-472;15-16,469-468;18-21,466-463	13-14,471-470[SIL];17-17,467-467[SIL]	((((.((..((((((((((((&))))))))))))..)).))))	UAGUUAAGAGACUAAUUGAGC&GUUUAAUUAGUCGAUUUAUUA	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN14314_c0_g1_474_TPlot.pdf
TRINITY_DN14316_c0_g1:3617	si_a787	TRINITY_DN14316_c0_g1	3606	3625	3617	-26.30	-18.30	0.695817490494297	4	1-5,3625-3621;7-17,3620-3610;19-21,3608-3606	6-6,x-x[BULq];18-18,3609-3609[SIL]	(((.(((((((((((-(((((&))))).))))))))))).)))	UGGCAAAUAGAAGAA-AGAAG&CUUCUAUUUUUCUAUUUUCCA	2	0.999968173008182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN14316_c0_g1_3617_TPlot.pdf
TRINITY_DN14316_c0_g2:916	si_s69	TRINITY_DN14316_c0_g2	905	925	916	-23.40	-15.90	0.67948717948718	6.5	2-7,924-919;9-20,917-906	1-1,925-925[UP5];8-8,918-918[SIL];21-21,905-905[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AAAGGAGGAAAAAGAGGAGUA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN14316_c0_g2_916_TPlot.pdf
TRINITY_DN14316_c0_g2:917	si_s68	TRINITY_DN14316_c0_g2	906	926	917	-23.10	-15.90	0.688311688311688	7.5	3-8,924-919;10-21,917-906	1-2,926-925[UP5];9-9,918-918[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AAGGAGGAAAAAGAGGAGUAG&CAACUUCUAUUUUUUUUCUUU	2	0.999999997258333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN14316_c0_g2_917_TPlot.pdf
TRINITY_DN14316_c0_g2:918	si_a789	TRINITY_DN14316_c0_g2	908	927	918	-24.80	-16.80	0.67741935483871	8.5	1-11,927-917;13-18,916-911	12-12,x-x[BULq];19-21,910-908[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GGAGGAAAA-AGAGGAGUAGG&UCUAUUUUUCUAUUUUCCAAU	2	0.999995490125337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN14316_c0_g2_918_TPlot.pdf
TRINITY_DN14316_c0_g2:919	si_a788	TRINITY_DN14316_c0_g2	909	928	919	-24.80	-16.80	0.67741935483871	8	2-12,927-917;14-19,916-911	1-1,928-928[UP5];13-13,x-x[BULq];20-21,910-909[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	GAGGAAAA-AGAGGAGUAGGU&UUCUAUUUUUCUAUUUUCCAA	3	0.999999999917622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN14316_c0_g2_919_TPlot.pdf
TRINITY_DN14316_c0_g2:921	si_a786	TRINITY_DN14316_c0_g2	911	931	921	-26.60	-18.50	0.695488721804511	7	1-3,931-929;4-14,927-917;16-21,916-911	x-x,928-928[BULt];15-15,x-x[BULq]	((((((-(((((((((((.(((&)))-))))))))))).))))))	GGAAAA-AGAGGAGUAGGUAGA&UCU-UCUAUUUUUCUAUUUUCC	4	0.999999972857119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN14316_c0_g2_921_TPlot.pdf
TRINITY_DN14316_c0_g2:922	si_s72	TRINITY_DN14316_c0_g2	909	932	922	-24.10	-16.80	0.697095435684647	9.5	1-8,932-925;9-16,923-916;17-21,913-909	x-x,924-924[BULt];x-x,915-914[BULt]	(((((..((((((((.((((((((&))))))))-))))))))--)))))	GAGGAAAAAGAGGAGUAGGUAGAA&UUCUAUUU-UUUUUCUU--UCCUU	2	0.999999999998987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14316_c0_g2_922_TPlot.pdf
TRINITY_DN14316_c0_g2:925	si_s70	TRINITY_DN14316_c0_g2	911	934	925	-25.80	-17.10	0.662790697674419	9	2-10,933-925;11-18,923-916;19-21,913-911	1-1,934-934[UP5];x-x,924-924[BULt];x-x,915-914[BULt]	(((..((((((((.(((((((((.&.)))))))))-))))))))--)))	GGAAAAAGAGGAGUAGGUAGAAGA&ACUUCUAUUU-UUUUUCUU--UCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN14316_c0_g2_925_TPlot.pdf
TRINITY_DN1431_c0_g1:827	si_a94	TRINITY_DN1431_c0_g1	813	836	827	-28.60	-18.80	0.657342657342657	8	3-13,834-824;14-16,820-818;18-21,816-813	1-2,836-835[UP5];x-x,823-821[BULt];17-17,817-817[SIL]	((((.(((...(((((((((((..&..)))))))))))---))).))))	UUAUGUUCACAGUUGCCUUUUCAG&AAGAAAAGGUAAC---GAAGAUAA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN1431_c0_g1_827_TPlot.pdf
TRINITY_DN14323_c1_g2:1332	si_a80	TRINITY_DN14323_c1_g2	1322	1341	1332	-22.10	-15.30	0.692307692307692	7.5	2-15,1340-1327;17-18,1326-1325	1-1,1341-1341[UP5];16-16,x-x[BULq];19-21,1324-1322[UP3]	...((-((((((((((((((.&.)))))))))))))).))...	AGCUC-UAGUAGUGAGAAACU&UGUUUUUCAUUAUUAAGAAAA	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN14323_c1_g2_1332_TPlot.pdf
TRINITY_DN14323_c1_g2:1335	si_a77	TRINITY_DN14323_c1_g2	1325	1344	1335	-22.20	-15.00	0.675675675675676	10	5-18,1340-1327;20-21,1326-1325	1-4,1344-1341[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	UC-UAGUAGUGAGAAACUAUU&AAUUGUUUUUCAUUAUUAAGA	3	0.999997540575938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN14323_c1_g2_1335_TPlot.pdf
TRINITY_DN14323_c1_g2:1342	si_a70	TRINITY_DN14323_c1_g2	1331	1350	1342	-23.90	-17.30	0.723849372384937	7	1-8,1350-1343;12-21,1340-1331	9-11,1342-1341[AILq]	((((((((((..-((((((((&))))))))...))))))))))	AGUGAGAAACUA-UUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN14323_c1_g2_1342_TPlot.pdf
TRINITY_DN14326_c0_g1:134	si_s767	TRINITY_DN14326_c0_g1	123	143	134	-28.10	-19.70	0.701067615658363	4.5	1-9,143-135;11-12,133-132;14-20,130-124	10-10,134-134[SIL];13-13,131-131[SIL];21-21,123-123[UP3]	.(((((((.((.(((((((((&))))))))).)).))))))).	CGCGAUAGAAAAUAAUCGUUG&CAACGAUUAAUUACUAUUGCU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN14326_c0_g1_134_TPlot.pdf
TRINITY_DN14326_c0_g1:136	si_s765	TRINITY_DN14326_c0_g1	125	145	136	-25.70	-18.70	0.727626459143969	3.5	1-11,145-135;13-14,133-132;16-21,130-125	12-12,134-134[SIL];15-15,131-131[SIL]	((((((.((.(((((((((((&))))))))))).)).))))))	CGAUAGAAAAUAAUCGUUGUU&AACAACGAUUAAUUACUAUUG	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s765_TRINITY_DN14326_c0_g1_136_TPlot.pdf
TRINITY_DN14326_c0_g1:143	si_s758	TRINITY_DN14326_c0_g1	132	152	143	-23.50	-15.80	0.672340425531915	14	7-18,146-135	1-6,152-147[UP5];19-21,134-132[UP3]	...((((((((((((......&......))))))))))))...	AAAUAAUCGUUGUUGAGAAGU&UUAAAACAACAACGAUUAAUU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN14326_c0_g1_143_TPlot.pdf
TRINITY_DN14326_c0_g1:149	si_s814	TRINITY_DN14326_c0_g1	138	159	149	-26.60	-17.70	0.665413533834586	11.5	5-7,155-153;8-21,151-138	1-4,159-156[UP5];x-x,152-152[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	UCGUUGUUGAGAAGUAGGAAGG&GUUACCU-UUUCUUAAUAAUGA	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN14326_c0_g1_149_TPlot.pdf
TRINITY_DN14326_c0_g1:372	si_a76	TRINITY_DN14326_c0_g1	363	381	372	-21.20	-14.10	0.665094339622642	7	2-16,380-366;19-21,365-363	1-1,381-381[UP5];17-18,x-x[BULq]	(((--(((((((((((((((.&.)))))))))))))))..)))	CUU--UAAUGGGAAGCGAUUA&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN14326_c0_g1_372_TPlot.pdf
TRINITY_DN14326_c0_g1:380	si_a713	TRINITY_DN14326_c0_g1	369	389	380	-29.60	-19.90	0.672297297297297	5	1-7,389-383;9-16,381-374;18-20,372-370	8-8,382-382[SIL];17-17,373-373[SIL];21-21,369-369[UP3]	.(((.((((((((.(((((((&))))))).)))))))).))).	UGGGAAGCGAUUACUUUGGAA&UUCCAAAAUAAUCGUUACUCG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a713_TRINITY_DN14326_c0_g1_380_TPlot.pdf
TRINITY_DN14326_c0_g1:381	si_a712	TRINITY_DN14326_c0_g1	370	390	381	-28.20	-19.20	0.680851063829787	5	2-8,389-383;10-17,381-374;19-21,372-370	1-1,390-390[UP5];9-9,382-382[SIL];18-18,373-373[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	GGGAAGCGAUUACUUUGGAAA&AUUCCAAAAUAAUCGUUACUC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN14326_c0_g1_381_TPlot.pdf
TRINITY_DN14326_c0_g1:454	si_s660	TRINITY_DN14326_c0_g1	443	463	454	-35.00	-24.40	0.697142857142857	12	5-17,459-447	1-4,463-460[UP5];18-21,446-443[UP3]	....(((((((((((((....&....)))))))))))))....	AGAUGGUUCGAUCCCCCAAAA&AAUCGGGGGAUCGAAUUGAUU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN14326_c0_g1_454_TPlot.pdf
TRINITY_DN14326_c0_g1:457	si_s657	TRINITY_DN14326_c0_g1	446	466	457	-36.70	-24.40	0.664850136239782	15	8-20,459-447	1-7,466-460[UP5];21-21,446-446[UP3]	.(((((((((((((.......&.......))))))))))))).	UGGUUCGAUCCCCCAAAAAAA&UACAAUCGGGGGAUCGAAUUG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s657_TRINITY_DN14326_c0_g1_457_TPlot.pdf
TRINITY_DN14326_c0_g1:520	si_s316	TRINITY_DN14326_c0_g1	509	529	520	-31.50	-20.60	0.653968253968254	8.5	1-13,529-517;15-16,515-514	14-14,516-516[SIL];17-21,513-509[UP3]	.....((.(((((((((((((&))))))))))))).)).....	CUUAGGGGAAGAAGGACGGAG&UUCUGUCCUUCUUGUUACAAA	2	0.999883869540772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN14326_c0_g1_520_TPlot.pdf
TRINITY_DN14326_c0_g1:521	si_s315	TRINITY_DN14326_c0_g1	510	530	521	-31.60	-20.60	0.651898734177215	9	2-14,529-517;16-17,515-514	1-1,530-530[UP5];15-15,516-516[SIL];18-21,513-510[UP3]	....((.(((((((((((((.&.))))))))))))).))....	UUAGGGGAAGAAGGACGGAGC&AUUCUGUCCUUCUUGUUACAA	4	0.999999973411668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN14326_c0_g1_521_TPlot.pdf
TRINITY_DN14326_c0_g1:523	si_s313	TRINITY_DN14326_c0_g1	512	532	523	-30.80	-20.60	0.668831168831169	11	4-16,529-517;18-19,515-514	1-3,532-530[UP5];17-17,516-516[SIL];20-21,513-512[UP3]	..((.(((((((((((((...&...))))))))))))).))..	AGGGGAAGAAGGACGGAGCCU&AAAUUCUGUCCUUCUUGUUAC	2	0.999537689506999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN14326_c0_g1_523_TPlot.pdf
TRINITY_DN14326_c0_g1:524	si_s312	TRINITY_DN14326_c0_g1	513	533	524	-29.00	-20.60	0.710344827586207	12	5-17,529-517;19-20,515-514	1-4,533-530[UP5];18-18,516-516[SIL];21-21,513-513[UP3]	.((.(((((((((((((....&....))))))))))))).)).	GGGGAAGAAGGACGGAGCCUC&AAAAUUCUGUCCUUCUUGUUA	2	0.988813635845706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN14326_c0_g1_524_TPlot.pdf
TRINITY_DN14326_c0_g1:539	si_s94	TRINITY_DN14326_c0_g1	529	548	539	-35.50	-23.40	0.659154929577465	6	1-13,548-536;16-18,534-532	14-15,535-535[AILq];19-21,531-529[UP3]	...(((.-(((((((((((((&)))))))))))))..)))...	GCCUCCC-AGCGAAGAGGAAG&CUUCUUCUUCGCUUCGGAUUG	2	0.999990483393813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN14326_c0_g1_539_TPlot.pdf
TRINITY_DN14326_c0_g1:540	si_s93	TRINITY_DN14326_c0_g1	530	549	540	-34.80	-23.40	0.672413793103448	6	2-14,548-536;17-19,534-532	1-1,549-549[UP5];15-16,535-535[AILq];20-21,531-530[UP3]	..(((.-(((((((((((((.&.)))))))))))))..)))..	CCUCCC-AGCGAAGAGGAAGU&UCUUCUUCUUCGCUUCGGAUU	4	0.999999999525165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN14326_c0_g1_540_TPlot.pdf
TRINITY_DN14326_c0_g1:546	si_s87	TRINITY_DN14326_c0_g1	535	555	546	-32.90	-21.90	0.665653495440729	8	1-3,555-553;5-5,551-551;8-20,548-536	4-4,552-552[SIL];6-7,550-549[SIL];21-21,535-535[UP3]	.(((((((((((((..(.(((&))).)..))))))))))))).	CAGCGAAGAGGAAGUUAUGAA&UUCCUUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN14326_c0_g1_546_TPlot.pdf
TRINITY_DN14326_c0_g1:547	si_s86	TRINITY_DN14326_c0_g1	536	556	547	-32.90	-22.10	0.671732522796353	7.5	2-4,555-553;6-6,551-551;9-21,548-536	1-1,556-556[UP5];5-5,552-552[SIL];7-8,550-549[SIL]	(((((((((((((..(.(((.&.))).)..)))))))))))))	AGCGAAGAGGAAGUUAUGAAG&UUUCCUUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN14326_c0_g1_547_TPlot.pdf
TRINITY_DN14326_c0_g1:587	si_s69	TRINITY_DN14326_c0_g1	576	601	587	-23.40	-15.30	0.653846153846154	12.5	1-6,601-596;7-20,590-577	x-x,595-591[BULt];21-21,576-576[UP3]	.((((((((((((((.....((((((&))))))-----)))))))))))))).	UGAAGAAAAAAAAUGCUGUUGAAGUU&AACUUC-----UAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN14326_c0_g1_587_TPlot.pdf
TRINITY_DN14326_c0_g1:588	si_s68	TRINITY_DN14326_c0_g1	577	602	588	-23.10	-18.20	0.787878787878788	11.5	1-7,602-596;8-21,590-577	x-x,595-591[BULt]	((((((((((((((.....(((((((&)))))))-----))))))))))))))	GAAGAAAAAAAAUGCUGUUGAAGUUG&CAACUUC-----UAUUUUUUUUCUUU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN14326_c0_g1_588_TPlot.pdf
TRINITY_DN14326_c0_g1:589	si_s67	TRINITY_DN14326_c0_g1	578	603	589	-25.60	-17.30	0.67578125	12	2-8,602-596;9-21,590-578	1-1,603-603[UP5];x-x,595-591[BULt]	(((((((((((((.....(((((((.&.)))))))-----)))))))))))))	AAGAAAAAAAAUGCUGUUGAAGUUGA&GCAACUUC-----UAUUUUUUUUCUU	3	0.999999999026339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN14326_c0_g1_589_TPlot.pdf
TRINITY_DN1432_c0_g1:1068	si_a400	TRINITY_DN1432_c0_g1	1057	1077	1068	-22.80	-15.40	0.675438596491228	7	1-7,1077-1071;10-13,1068-1065;15-20,1063-1058	8-9,1070-1069[SIL];14-14,1064-1064[SIL];21-21,1057-1057[UP3]	.((((((.((((..(((((((&)))))))..)))).)))))).	GGUAGACUAAACUUUUCUAUA&UAUAGAAUUGUUUUGUUUAUA	4	0.99999992536643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1432_c0_g1_1068_TPlot.pdf
TRINITY_DN1432_c0_g1:1069	si_a399	TRINITY_DN1432_c0_g1	1058	1078	1069	-22.60	-15.00	0.663716814159292	7	2-8,1077-1071;11-14,1068-1065;16-21,1063-1058	1-1,1078-1078[UP5];9-10,1070-1069[SIL];15-15,1064-1064[SIL]	((((((.((((..(((((((.&.)))))))..)))).))))))	GUAGACUAAACUUUUCUAUAA&AUAUAGAAUUGUUUUGUUUAU	4	0.999999998027039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1432_c0_g1_1069_TPlot.pdf
TRINITY_DN1432_c0_g1:563	si_a321	TRINITY_DN1432_c0_g1	550	572	563	-26.70	-17.70	0.662921348314607	11	3-6,570-567;8-12,565-561;13-21,558-550	1-2,572-571[UP5];7-7,566-566[SIL];x-x,560-559[BULt]	(((((((((..(((((.((((..&..)))).)))))--)))))))))	GGAGUGAAAGUAGAUCUUGGAAA&UAUCCAUGAUUU--UUUUAUUCC	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1432_c0_g1_563_TPlot.pdf
TRINITY_DN14335_c2_g1:452	si_a763	TRINITY_DN14335_c2_g1	434	461	452	-28.80	-19.00	0.659722222222222	19	1-10,461-452;11-21,444-434	x-x,451-445[BULt]	(((((((((((.......((((((((((&))))))))))-------)))))))))))	UGAGUCAGUUAUUGAGGCAGAACCUAGA&UUUGGGUUUU-------UGAUUGAUUCA	3	0.999999999790959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN14335_c2_g1_452_TPlot.pdf
TRINITY_DN1433_c0_g1:1036	si_a477	TRINITY_DN1433_c0_g1	1025	1045	1036	-21.50	-14.10	0.655813953488372	4.5	1-10,1045-1036;12-21,1034-1025	11-11,1035-1035[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	UGUUUUAUAUUAUAAUAAUUG&UAAUUAUUGUUAUAUAGAAUA	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN1433_c0_g1_1036_TPlot.pdf
TRINITY_DN1433_c0_g1:389	si_a836	TRINITY_DN1433_c0_g1	378	398	389	-24.10	-16.40	0.680497925311203	16	8-19,391-380	1-7,398-392[UP5];20-21,379-378[UP3]	..((((((((((((.......&.......))))))))))))..	GAAGCGGCUUCUAUCUACGAA&AAAAAAAAUAGAAGUUGCUAA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN1433_c0_g1_389_TPlot.pdf
TRINITY_DN1433_c0_g1:587	si_s707	TRINITY_DN1433_c0_g1	569	596	587	-30.90	-20.10	0.650485436893204	17.5	1-11,596-586;12-21,578-569	x-x,585-579[BULt]	((((((((((.......(((((((((((&)))))))))))-------))))))))))	UUUUCCUUGUAAUCAAUUCGCUAAUGAG&UUUAUUAGUGA-------ACAGGGAAAG	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s707_TRINITY_DN1433_c0_g1_587_TPlot.pdf
TRINITY_DN14344_c0_g1:3292	si_s509	TRINITY_DN14344_c0_g1	3281	3302	3292	-22.80	-14.90	0.653508771929825	8.5	2-6,3301-3297;7-17,3295-3285	1-1,3302-3302[UP5];x-x,3296-3296[BULt];18-21,3284-3281[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	AUACAGGAAUAUAGGUAUUGUA&AACAAU-UCUAUAUUCUUAAUU	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN14344_c0_g1_3292_TPlot.pdf
TRINITY_DN14345_c0_g1:2022	si_a596	TRINITY_DN14345_c0_g1	2011	2031	2022	-32.30	-21.10	0.653250773993808	8.5	2-11,2030-2021;13-16,2019-2016	1-1,2031-2031[UP5];12-12,2020-2020[SIL];17-21,2015-2011[UP3]	.....((((.((((((((((.&.)))))))))).)))).....	AAUUGGCGGCAAUUCUGUCCC&AGGACAGAAUUUUCGCAAUUC	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN14345_c0_g1_2022_TPlot.pdf
TRINITY_DN14345_c0_g1:532	si_a785	TRINITY_DN14345_c0_g1	521	541	532	-25.90	-24.40	0.942084942084942	7	1-8,541-534;11-21,531-521	9-10,533-532[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	GAAGAUGGAGAUUUGGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14345_c0_g1_532_TPlot.pdf
TRINITY_DN14345_c0_g1:533	si_a784	TRINITY_DN14345_c0_g1	522	542	533	-24.70	-21.40	0.866396761133603	7.5	2-9,541-534;12-21,531-522	1-1,542-542[UP5];10-11,533-532[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	AAGAUGGAGAUUUGGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14345_c0_g1_533_TPlot.pdf
TRINITY_DN14345_c0_g1:534	si_a783	TRINITY_DN14345_c0_g1	523	543	534	-24.70	-20.50	0.829959514170041	9.5	3-10,541-534;13-21,531-523	1-2,543-542[UP5];11-12,533-532[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	AGAUGGAGAUUUGGAAGAGGA&AACUCUUCUAUUUUUCUAUUU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN14345_c0_g1_534_TPlot.pdf
TRINITY_DN1434_c0_g1:1693	si_a121	TRINITY_DN1434_c0_g1	1682	1705	1693	-29.30	-19.70	0.672354948805461	17	2-8,1704-1698;12-21,1691-1682	1-1,1705-1705[UP5];9-11,1697-1692[AILt]	((((((((((......(((((((.&.)))))))---...))))))))))	GCUGUUGCUGCACAACAGCAGGCG&AGCUUGUU---UUAUAGCAAUAGU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN1434_c0_g1_1693_TPlot.pdf
TRINITY_DN1434_c0_g1:1819	si_s94	TRINITY_DN1434_c0_g1	1809	1828	1819	-35.50	-24.70	0.695774647887324	4	1-16,1828-1813;19-21,1811-1809	17-18,1812-1812[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	CAGG-UGAAGUGAAGAAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN1434_c0_g1_1819_TPlot.pdf
TRINITY_DN1434_c0_g1:1821	si_s92	TRINITY_DN1434_c0_g1	1810	1830	1821	-34.90	-23.80	0.681948424068768	7	3-18,1828-1813	1-2,1830-1829[UP5];19-21,1812-1810[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGGUGAAGUGAAGAAGAAGUC&UUCUUCUUCUUCGCUUCGGAU	3	0.999999991842697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1434_c0_g1_1821_TPlot.pdf
TRINITY_DN1434_c0_g1:1823	si_s90	TRINITY_DN1434_c0_g1	1812	1832	1823	-35.30	-23.80	0.674220963172805	9	5-20,1828-1813	1-4,1832-1829[UP5];21-21,1812-1812[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUGAAGUGAAGAAGAAGUCUU&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999994191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1434_c0_g1_1823_TPlot.pdf
TRINITY_DN1434_c0_g1:1824	si_s89	TRINITY_DN1434_c0_g1	1813	1838	1824	-35.30	-24.30	0.688385269121813	16	1-3,1838-1836;6-21,1828-1813	4-5,1835-1829[AILt]	((((((((((((((((.......(((&)))-----..))))))))))))))))	UGAAGUGAAGAAGAAGUCUUUCUGGG&CCU-----UUCUUCUUCUUCGCUUCG	2	0.999994357653408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1434_c0_g1_1824_TPlot.pdf
TRINITY_DN1434_c0_g1:1825	si_s88	TRINITY_DN1434_c0_g1	1814	1838	1825	-34.80	-23.74	0.682183908045977	15	1-3,1838-1836;7-21,1828-1814	4-6,1835-1829[AILt]	(((((((((((((((.......(((&)))----...)))))))))))))))	GAAGUGAAGAAGAAGUCUUUCUGGG&UCC----UUUCUUCUUCUUCGCUUC	3	0.999999999984337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1434_c0_g1_1825_TPlot.pdf
TRINITY_DN1434_c0_g1:1891	si_s69	TRINITY_DN1434_c0_g1	1880	1901	1891	-23.40	-16.40	0.700854700854701	8	3-6,1899-1896;7-20,1894-1881	1-2,1901-1900[UP5];x-x,1895-1895[BULt];21-21,1880-1880[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AGAAGAGAAAAAGUACGAAGAC&AACUUC-UAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1434_c0_g1_1891_TPlot.pdf
TRINITY_DN1434_c0_g1:1892	si_s68	TRINITY_DN1434_c0_g1	1881	1902	1892	-23.10	-16.20	0.701298701298701	9	4-7,1899-1896;8-21,1894-1881	1-3,1902-1900[UP5];x-x,1895-1895[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GAAGAGAAAAAGUACGAAGACG&CAACUUC-UAUUUUUUUUCUUU	2	0.999999772545795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1434_c0_g1_1892_TPlot.pdf
TRINITY_DN1434_c0_g1:1893	si_s67	TRINITY_DN1434_c0_g1	1882	1903	1893	-25.60	-18.20	0.7109375	7.5	1-2,1903-1902;5-8,1899-1896;9-21,1894-1882	3-4,1901-1900[SIL];x-x,1895-1895[BULt]	(((((((((((((.((((..((&))..))))-)))))))))))))	AAGAGAAAAAGUACGAAGACGC&GCAACUUC-UAUUUUUUUUCUU	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1434_c0_g1_1893_TPlot.pdf
TRINITY_DN1434_c0_g2:468	si_a410	TRINITY_DN1434_c0_g2	457	477	468	-17.80	-13.50	0.758426966292135	7.5	2-16,476-462	1-1,477-477[UP5];17-21,461-457[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUGAUUAGAUGUAAACAAAG&UUUUGUUUAUAUUUAAAUAAA	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1434_c0_g2_468_TPlot.pdf
TRINITY_DN1434_c0_g3:772	si_a409	TRINITY_DN1434_c0_g3	761	781	772	-19.50	-13.90	0.712820512820513	7.5	2-17,780-765	1-1,781-781[UP5];18-21,764-761[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUGAUUAGAUGUAAACAAAGA&GUUUUGUUUAUAUUUAAAUAA	4	0.999992998292024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1434_c0_g3_772_TPlot.pdf
TRINITY_DN1434_c0_g4:1709	si_a122	TRINITY_DN1434_c0_g4	1698	1721	1709	-29.00	-20.90	0.720689655172414	16	1-7,1721-1715;11-21,1708-1698	8-10,1714-1709[AILt]	(((((((((((......(((((((&)))))))---...)))))))))))	UGCUGUUGCUGCACAACAGCAGGC&GCUUGUU---UUAUAGCAAUAGUA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN1434_c0_g4_1709_TPlot.pdf
TRINITY_DN1434_c0_g4:1836	si_s94	TRINITY_DN1434_c0_g4	1826	1845	1836	-35.50	-24.70	0.695774647887324	4	1-16,1845-1830;19-21,1828-1826	17-18,1829-1829[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	CAGG-UGAAGUGAAGAAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN1434_c0_g4_1836_TPlot.pdf
TRINITY_DN1434_c0_g4:1837	si_s93	TRINITY_DN1434_c0_g4	1826	1846	1837	-34.80	-23.80	0.683908045977012	6.5	2-17,1845-1830	1-1,1846-1846[UP5];18-21,1829-1826[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAGGUGAAGUGAAGAAGAAGU&UCUUCUUCUUCGCUUCGGAUU	4	0.999999843083262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1434_c0_g4_1837_TPlot.pdf
TRINITY_DN1434_c0_g4:1838	si_s92	TRINITY_DN1434_c0_g4	1827	1847	1838	-34.90	-23.80	0.681948424068768	7	3-18,1845-1830	1-2,1847-1846[UP5];19-21,1829-1827[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGGUGAAGUGAAGAAGAAGUC&UUCUUCUUCUUCGCUUCGGAU	3	0.999999992006172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1434_c0_g4_1838_TPlot.pdf
TRINITY_DN1434_c0_g4:1840	si_s90	TRINITY_DN1434_c0_g4	1829	1849	1840	-35.30	-23.80	0.674220963172805	9	5-20,1845-1830	1-4,1849-1846[UP5];21-21,1829-1829[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUGAAGUGAAGAAGAAGUCUU&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999986946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1434_c0_g4_1840_TPlot.pdf
TRINITY_DN1434_c0_g4:1841	si_s89	TRINITY_DN1434_c0_g4	1830	1855	1841	-35.30	-24.30	0.688385269121813	16	1-3,1855-1853;6-21,1845-1830	4-5,1852-1846[AILt]	((((((((((((((((.......(((&)))-----..))))))))))))))))	UGAAGUGAAGAAGAAGUCUUUCUGGG&CCU-----UUCUUCUUCUUCGCUUCG	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1434_c0_g4_1841_TPlot.pdf
TRINITY_DN1434_c0_g4:1842	si_s88	TRINITY_DN1434_c0_g4	1831	1855	1842	-34.80	-23.74	0.682183908045977	15	1-3,1855-1853;7-21,1845-1831	4-6,1852-1846[AILt]	(((((((((((((((.......(((&)))----...)))))))))))))))	GAAGUGAAGAAGAAGUCUUUCUGGG&UCC----UUUCUUCUUCUUCGCUUC	3	0.999999999984016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1434_c0_g4_1842_TPlot.pdf
TRINITY_DN1434_c0_g4:1908	si_s69	TRINITY_DN1434_c0_g4	1897	1918	1908	-23.40	-16.40	0.700854700854701	8	3-6,1916-1913;7-20,1911-1898	1-2,1918-1917[UP5];x-x,1912-1912[BULt];21-21,1897-1897[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AGAAGAGAAAAAGUACGAAGAC&AACUUC-UAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1434_c0_g4_1908_TPlot.pdf
TRINITY_DN1434_c0_g4:1909	si_s68	TRINITY_DN1434_c0_g4	1898	1919	1909	-23.10	-16.20	0.701298701298701	9	4-7,1916-1913;8-21,1911-1898	1-3,1919-1917[UP5];x-x,1912-1912[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GAAGAGAAAAAGUACGAAGACG&CAACUUC-UAUUUUUUUUCUUU	2	0.999999463142234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1434_c0_g4_1909_TPlot.pdf
TRINITY_DN1434_c0_g4:1910	si_s67	TRINITY_DN1434_c0_g4	1899	1920	1910	-25.60	-18.20	0.7109375	7.5	1-2,1920-1919;5-8,1916-1913;9-21,1911-1899	3-4,1918-1917[SIL];x-x,1912-1912[BULt]	(((((((((((((.((((..((&))..))))-)))))))))))))	AAGAGAAAAAGUACGAAGACGC&GCAACUUC-UAUUUUUUUUCUU	2	0.997915632487503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1434_c0_g4_1910_TPlot.pdf
TRINITY_DN1434_c0_g4:464	si_s316	TRINITY_DN1434_c0_g4	454	473	464	-31.50	-23.70	0.752380952380952	6.5	2-11,472-463;14-21,461-454	1-1,473-473[UP5];12-13,462-462[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	UUUGUAGCU-GGAGGACAGGU&UUCUGUCCUUCUUGUUACAAA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1434_c0_g4_464_TPlot.pdf
TRINITY_DN14352_c0_g1:1507	si_a799	TRINITY_DN14352_c0_g1	1495	1516	1507	-32.50	-22.80	0.701538461538462	8	3-14,1514-1503;15-18,1501-1498	1-2,1516-1515[UP5];x-x,1502-1502[BULt];19-21,1497-1495[UP3]	...((((.((((((((((((..&..))))))))))))-))))...	UAUGCUUACGGAUUGGAAAGCA&UAUUUUCCAAUCCG-AAGCGAA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN14352_c0_g1_1507_TPlot.pdf
TRINITY_DN14352_c0_g1:4022	si_a785	TRINITY_DN14352_c0_g1	4011	4031	4022	-25.90	-17.70	0.683397683397683	6	1-10,4031-4022;12-13,4020-4019;15-21,4017-4011	11-11,4021-4021[SIL];14-14,4018-4018[SIL]	(((((((.((.((((((((((&)))))))))).)).)))))))	GAGGAUAUAAUAAUGGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999999999999802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14352_c0_g1_4022_TPlot.pdf
TRINITY_DN14352_c0_g1:4034	si_a69	TRINITY_DN14352_c0_g1	4023	4043	4034	-24.00	-16.10	0.670833333333333	8.5	2-10,4042-4034;12-12,4032-4032;14-21,4030-4023	1-1,4043-4043[UP5];11-11,4033-4033[SIL];13-13,4031-4031[SIL]	((((((((.(.(((((((((.&.))))))))).).))))))))	AUGGAGGAGGUUUUGGAGGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999837681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN14352_c0_g1_4034_TPlot.pdf
TRINITY_DN14352_c0_g1:4108	si_a785	TRINITY_DN14352_c0_g1	4097	4118	4108	-25.90	-18.10	0.698841698841699	10	1-8,4118-4111;10-18,4108-4100;20-21,4098-4097	9-9,4110-4109[AILt];19-19,4099-4099[SIL]	((.(((((((((..((((((((&))))))))-.))))))))).))	GGUGGUGGAGGAUUUAGAGGAG&CUCUUCUA-UUUUUCUAUUUUC	2	0.999997549215764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14352_c0_g1_4108_TPlot.pdf
TRINITY_DN14352_c0_g1:4109	si_s613	TRINITY_DN14352_c0_g1	4097	4118	4109	-29.20	-19.30	0.660958904109589	8	1-13,4118-4106;16-17,4102-4101;19-21,4099-4097	14-15,4105-4103[AILt];18-18,4100-4100[SIL]	(((.((...(((((((((((((&)))))))))))))-..)).)))	GGUGGUGGAGGAUUUAGAGGAG&CUUUUUUAAAUCC-AAGCGAUC	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN14352_c0_g1_4109_TPlot.pdf
TRINITY_DN14352_c0_g1:4123	si_s808	TRINITY_DN14352_c0_g1	4112	4132	4123	-28.60	-19.50	0.681818181818182	9.5	1-11,4132-4122;13-19,4120-4114	12-12,4121-4121[SIL];20-21,4113-4112[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AGAGGAGGACGUGGCGGAGGU&AUCUUCGUUACCUUUUCUUAA	4	0.999999908254907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN14352_c0_g1_4123_TPlot.pdf
TRINITY_DN14352_c0_g1:4340	si_a709	TRINITY_DN14352_c0_g1	4325	4349	4340	-26.60	-17.96	0.675187969924812	13	1-11,4349-4339;14-21,4332-4325	12-13,4338-4333[AILt]	((((((((......(((((((((((&)))))))))))----..))))))))	UAAUGGUUUUUAUGUUUGGAGUGUA&UACAUUCCAAA----AUAAUCGUUA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN14352_c0_g1_4340_TPlot.pdf
TRINITY_DN14355_c0_g1:794	si_s80	TRINITY_DN14355_c0_g1	783	804	794	-28.20	-18.40	0.652482269503546	8	1-9,804-796;12-21,792-783	10-11,795-793[AILt]	((((((((((...(((((((((&)))))))))-..))))))))))	GAAGAAGAAACUUGAAGAGAAA&UUUUUCUUU-CCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN14355_c0_g1_794_TPlot.pdf
TRINITY_DN14356_c1_g2:169	si_s740	TRINITY_DN14356_c1_g2	156	178	169	-35.20	-22.96	0.652272727272727	13	2-11,177-168;15-18,162-159	1-1,178-178[UP5];12-14,167-163[AILt];19-21,158-156[UP3]	...((((.....((((((((((.&.))))))))))--...))))...	AUUGGUCUGCAGCUAUUCGCCCA&CGGGUGAAUAG--AUUGACCUUA	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN14356_c1_g2_169_TPlot.pdf
TRINITY_DN1436_c0_g1:2542	si_s483	TRINITY_DN1436_c0_g1	2531	2552	2542	-21.40	-14.30	0.668224299065421	6	1-4,2552-2549;5-9,2547-2543;11-20,2541-2532	x-x,2548-2548[BULt];10-10,2542-2542[SIL];21-21,2531-2531[UP3]	.((((((((((.(((((.((((&))))-))))).)))))))))).	GAUAUUUAAAUUAGUAUAAGGA&UCCU-AUAUUUAUUUAAAUAUA	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN1436_c0_g1_2542_TPlot.pdf
TRINITY_DN1436_c0_g1:554	si_a496	TRINITY_DN1436_c0_g1	535	563	554	-32.40	-21.44	0.661728395061728	20.5	1-10,563-554;12-20,544-536	11-11,553-545[AILt];21-21,535-535[UP3]	.(((((((((.........((((((((((&))))))))))--------.))))))))).	UGGGAGGCGACUCUUCAAUAAACGACAUG&UAUGUCGUUU--------UUCGUCUUCCU	4	0.999999999997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1436_c0_g1_554_TPlot.pdf
TRINITY_DN1436_c0_g1:555	si_a495	TRINITY_DN1436_c0_g1	536	564	555	-31.90	-21.04	0.659561128526646	21	2-11,563-554;13-21,544-536	1-1,564-564[UP5];12-12,553-545[AILt]	(((((((((.........((((((((((.&.))))))))))--------.)))))))))	GGGAGGCGACUCUUCAAUAAACGACAUGC&AUAUGUCGUUU--------UUCGUCUUCC	4	0.999999999907035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1436_c0_g1_555_TPlot.pdf
TRINITY_DN14374_c0_g1:2330	si_s1	TRINITY_DN14374_c0_g1	2319	2339	2330	-18.70	-12.90	0.689839572192513	8.5	2-15,2338-2325	1-1,2339-2339[UP5];16-21,2324-2319[UP3]	......((((((((((((((.&.))))))))))))))......	CAAGUUUGAGUGAUAUAAAAU&UUUUUAUAUUACUUAUUAUUA	3	0.999999492923785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN14374_c0_g1_2330_TPlot.pdf
TRINITY_DN14374_c0_g1:327	si_s568	TRINITY_DN14374_c0_g1	316	335	327	-30.60	-20.00	0.65359477124183	10	3-9,333-327;12-18,325-319	1-2,335-334[UP5];10-11,326-326[AILq];19-21,318-316[UP3]	...(((((((.-(((((((..&..)))))))..)))))))...	AAAUUAUUCCA-GUCCCGACG&UUUCGGGACAAGGAAUAAAAA	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN14374_c0_g1_327_TPlot.pdf
TRINITY_DN14374_c0_g1:328	si_s566	TRINITY_DN14374_c0_g1	318	338	328	-30.70	-20.20	0.657980456026059	7	1-4,338-335;5-11,333-327;14-20,325-319	x-x,334-334[BULt];12-13,326-326[AILq];21-21,318-318[UP3]	.(((((((.-(((((((.((((&))))-)))))))..))))))).	AUUAUUCCA-GUCCCGACGAAU&AUUU-UCGGGACAAGGAAUAAA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s566_TRINITY_DN14374_c0_g1_328_TPlot.pdf
TRINITY_DN14374_c0_g1:531	si_a402	TRINITY_DN14374_c0_g1	520	540	531	-22.40	-15.30	0.683035714285714	7.5	1-10,540-531;12-18,529-523	11-11,530-530[SIL];19-21,522-520[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AAGAUGAACACAAUAGUUCUA&UAGAAUUGUUUUGUUUAUAUU	4	0.999999949580118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN14374_c0_g1_531_TPlot.pdf
TRINITY_DN14374_c0_g1:533	si_a400	TRINITY_DN14374_c0_g1	522	542	533	-22.80	-17.40	0.763157894736842	5	1-12,542-531;14-20,529-523	13-13,530-530[SIL];21-21,522-522[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GAUGAACACAAUAGUUCUAUG&UAUAGAAUUGUUUUGUUUAUA	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN14374_c0_g1_533_TPlot.pdf
TRINITY_DN14374_c0_g1:534	si_a399	TRINITY_DN14374_c0_g1	523	543	534	-22.60	-17.00	0.752212389380531	5.5	2-13,542-531;15-21,529-523	1-1,543-543[UP5];14-14,530-530[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AUGAACACAAUAGUUCUAUGG&AUAUAGAAUUGUUUUGUUUAU	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN14374_c0_g1_534_TPlot.pdf
TRINITY_DN14374_c0_g1:535	si_a398	TRINITY_DN14374_c0_g1	524	544	535	-22.40	-15.80	0.705357142857143	7.5	3-14,542-531;16-21,529-524	1-2,544-543[UP5];15-15,530-530[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UGAACACAAUAGUUCUAUGGC&AAUAUAGAAUUGUUUUGUUUA	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN14374_c0_g1_535_TPlot.pdf
TRINITY_DN14374_c0_g1:568	si_a453	TRINITY_DN14374_c0_g1	557	577	568	-21.10	-13.90	0.658767772511848	10.5	4-10,574-568;12-21,566-557	1-3,577-575[UP5];11-11,567-567[SIL]	((((((((((.(((((((...&...))))))).))))))))))	AUUGUGUGUAUUAGCAAUAGG&AUAAUUGUUGUUAUAUAUAAU	4	0.999999996555155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN14374_c0_g1_568_TPlot.pdf
TRINITY_DN14374_c0_g1:714	si_s76	TRINITY_DN14374_c0_g1	703	723	714	-23.60	-16.30	0.690677966101695	11	4-18,720-706	1-3,723-721[UP5];19-21,705-703[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUUGGAGGAAAGAAGAAGCUU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN14374_c0_g1_714_TPlot.pdf
TRINITY_DN14374_c0_g1:715	si_s75	TRINITY_DN14374_c0_g1	704	724	715	-24.00	-16.30	0.679166666666667	12	5-19,720-706	1-4,724-721[UP5];20-21,705-704[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUGGAGGAAAGAAGAAGCUUU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN14374_c0_g1_715_TPlot.pdf
TRINITY_DN14374_c0_g1:717	si_s73	TRINITY_DN14374_c0_g1	706	726	717	-24.00	-16.30	0.679166666666667	14	7-21,720-706	1-6,726-721[UP5]	(((((((((((((((......&......)))))))))))))))	GGAGGAAAGAAGAAGCUUUUU&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN14374_c0_g1_717_TPlot.pdf
TRINITY_DN14374_c0_g1:816	si_s553	TRINITY_DN14374_c0_g1	805	825	816	-23.50	-15.60	0.663829787234043	5	1-18,825-808	19-21,807-805[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUCAAAAUAUUGGUUCUAUUU&AAAUAGAAUUAAUAUUUUCGG	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN14374_c0_g1_816_TPlot.pdf
TRINITY_DN14374_c0_g1:817	si_s552	TRINITY_DN14374_c0_g1	806	826	817	-21.10	-16.80	0.796208530805687	4	1-19,826-808	20-21,807-806[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UCAAAAUAUUGGUUCUAUUUU&AAAAUAGAAUUAAUAUUUUCG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN14374_c0_g1_817_TPlot.pdf
TRINITY_DN14374_c0_g1:818	si_s551	TRINITY_DN14374_c0_g1	807	827	818	-21.30	-16.80	0.788732394366197	4	2-20,826-808	1-1,827-827[UP5];21-21,807-807[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CAAAAUAUUGGUUCUAUUUUA&CAAAAUAGAAUUAAUAUUUUC	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN14374_c0_g1_818_TPlot.pdf
TRINITY_DN14377_c0_g1:659	si_s6	TRINITY_DN14377_c0_g1	648	668	659	-21.70	-14.30	0.658986175115207	11.5	4-17,665-652	1-3,668-666[UP5];18-21,651-648[UP3]	....((((((((((((((...&...))))))))))))))....	UUGCGUGAUAAUAAGUGGCAA&AUAUUACUUAUUAUUACUAUA	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN14377_c0_g1_659_TPlot.pdf
TRINITY_DN1437_c0_g1:540	si_a667	TRINITY_DN1437_c0_g1	529	549	540	-32.10	-21.00	0.654205607476635	10	2-10,548-540;13-15,537-535;17-20,533-530	1-1,549-549[UP5];11-12,539-538[SIL];16-16,534-534[SIL];21-21,529-529[UP3]	.((((.(((..(((((((((.&.)))))))))..))).)))).	AGAGUUGGGUUUCAAUGGGUG&UGCCUAUUGAUUCCUUAUUCA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN1437_c0_g1_540_TPlot.pdf
TRINITY_DN1437_c0_g1:554	si_a785	TRINITY_DN1437_c0_g1	543	564	554	-25.90	-18.20	0.702702702702703	9.5	1-8,564-557;9-19,555-545	x-x,556-556[BULt];20-21,544-543[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	AUGGGUGGGAAGGCUGGAAGAG&CUCUUCUA-UUUUUCUAUUUUC	3	0.999999998417255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1437_c0_g1_554_TPlot.pdf
TRINITY_DN1437_c0_g1:557	si_a783	TRINITY_DN1437_c0_g1	545	566	557	-24.70	-18.40	0.744939271255061	10.5	3-10,564-557;11-21,555-545	1-2,566-565[UP5];x-x,556-556[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GGGUGGGAAGGCUGGAAGAGGA&AACUCUUCUA-UUUUUCUAUUU	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1437_c0_g1_557_TPlot.pdf
TRINITY_DN1437_c0_g1:560	si_s75	TRINITY_DN1437_c0_g1	549	569	560	-24.00	-16.90	0.704166666666667	9	2-12,568-558;15-21,555-549	1-1,569-569[UP5];13-14,557-556[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	GGGAAGGCUGGAAGAGGAGUU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1437_c0_g1_560_TPlot.pdf
TRINITY_DN1437_c0_g1:564	si_s65	TRINITY_DN1437_c0_g1	551	573	564	-26.00	-17.40	0.669230769230769	7	1-11,573-563;13-16,561-558;17-21,555-551	12-12,562-562[SIL];x-x,557-556[BULt]	(((((..((((.(((((((((((&))))))))))).))))--)))))	GAAGGCUGGAAGAGGAGUUGCUA&UAGCAACUUCUAUUUU--UUUUC	4	0.99999805292576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN1437_c0_g1_564_TPlot.pdf
TRINITY_DN1437_c0_g1:783	si_s809	TRINITY_DN1437_c0_g1	773	792	783	-28.50	-18.80	0.659649122807018	8.5	1-5,792-788;7-12,786-781;15-21,779-773	6-6,787-787[SIL];13-14,780-780[AILq]	(((((((.-((((((.(((((&))))).))))))..)))))))	GUUGGGAU-GGGUGGAGAAGA&UCUUCGUUACCUUUUCUUAAU	3	0.999999999744053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1437_c0_g1_783_TPlot.pdf
TRINITY_DN1437_c0_g1:791	si_s65	TRINITY_DN1437_c0_g1	781	800	791	-26.00	-17.50	0.673076923076923	5.5	1-11,800-790;13-17,789-785;19-21,783-781	12-12,x-x[BULq];18-18,784-784[SIL]	(((.(((((-(((((((((((&))))))))))).))))).)))	GGGUGGAGA-AGAAGUUGCUA&UAGCAACUUCUAUUUUUUUUC	2	0.999449689418886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN1437_c0_g1_791_TPlot.pdf
TRINITY_DN1437_c0_g1:792	si_s64	TRINITY_DN1437_c0_g1	782	801	792	-24.10	-16.40	0.680497925311203	6.5	2-12,800-790;14-18,789-785	1-1,801-801[UP5];13-13,x-x[BULq];19-21,784-782[UP3]	...(((((-(((((((((((.&.))))))))))).)))))...	GGUGGAGA-AGAAGUUGCUAC&UUAGCAACUUCUAUUUUUUUU	3	0.999999953479842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1437_c0_g1_792_TPlot.pdf
TRINITY_DN14382_c0_g1:3098	si_s92	TRINITY_DN14382_c0_g1	3081	3107	3098	-34.90	-25.30	0.724928366762178	18	2-10,3106-3098;11-19,3091-3083	1-1,3107-3107[UP5];x-x,3097-3092[BULt];20-21,3082-3081[UP3]	..(((((((((......(((((((((.&.)))))))))------)))))))))..	GGCCGAAGCGGACGCGUGGAAGGAGAU&UUCUUCUUCU------UCGCUUCGGAU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN14382_c0_g1_3098_TPlot.pdf
TRINITY_DN14383_c0_g1:667	si_a311	TRINITY_DN14383_c0_g1	657	676	667	-32.70	-21.70	0.663608562691131	8.5	2-9,675-668;11-15,666-662;17-19,661-659	1-1,676-676[UP5];10-10,667-667[SIL];16-16,x-x[BULq];20-21,658-657[UP3]	..(((-(((((.((((((((.&.)))))))).))))).)))..	GUUCA-GGGUAUGUCCAGGCA&CGCUUGGAUUUAUCCAUGAUU	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN14383_c0_g1_667_TPlot.pdf
TRINITY_DN14387_c0_g2:100	si_a410	TRINITY_DN14387_c0_g2	89	109	100	-17.80	-12.30	0.691011235955056	10	4-17,106-93	1-3,109-107[UP5];18-21,92-89[UP3]	....((((((((((((((...&...))))))))))))))....	UGAUUUUAAGUAUAAACAUAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999994228466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN14387_c0_g2_100_TPlot.pdf
TRINITY_DN14391_c0_g1:577	si_a754	TRINITY_DN14391_c0_g1	566	590	577	-34.60	-22.60	0.653179190751445	14.5	1-7,590-584;8-18,579-569	x-x,583-580[BULt];19-21,568-566[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UCCGGAUCCAGAGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN14391_c0_g1_577_TPlot.pdf
TRINITY_DN14395_c0_g1:175	si_s269	TRINITY_DN14395_c0_g1	164	183	175	-25.70	-16.72	0.650583657587549	11.5	1-3,183-181;8-19,177-166	4-7,180-178[AILq];20-21,165-164[UP3]	..((((((((((((...-(((&)))....))))))))))))..	UUUUGUGUCGGUUUGUG-GAG&CUCAAAAAAAUCGACAUAAUA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s269_TRINITY_DN14395_c0_g1_175_TPlot.pdf
TRINITY_DN1439_c0_g1:1138	si_a149	TRINITY_DN1439_c0_g1	1127	1149	1138	-29.40	-19.50	0.663265306122449	8.5	1-4,1149-1146;6-21,1142-1127	5-5,1145-1143[AILt]	((((((((((((((((...((((&))))--.))))))))))))))))	GUUGGCUUUAGAACAAAUGAACG&CGUU--GUUGUUUUAAGGUCAAU	2	0.99991597500299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1439_c0_g1_1138_TPlot.pdf
TRINITY_DN1439_c0_g1:2194	si_a77	TRINITY_DN1439_c0_g1	2185	2203	2194	-22.20	-14.80	0.666666666666667	6	3-16,2201-2188;19-21,2187-2185	1-2,2203-2202[UP5];17-18,x-x[BULq]	(((--((((((((((((((..&..))))))))))))))..)))	UCU--AUAAUGAGAAACAAAC&AAUUGUUUUUCAUUAUUAAGA	2	0.999930284539678	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN1439_c0_g1_2194_TPlot.pdf
TRINITY_DN143_c0_g1:3015	si_a586	TRINITY_DN143_c0_g1	3004	3027	3015	-31.50	-21.60	0.685714285714286	9.5	1-8,3027-3020;9-20,3016-3005	x-x,3019-3017[BULt];21-21,3004-3004[UP3]	.((((((((((((...((((((((&))))))))---)))))))))))).	UAUUCUGUUCUUUUAUUUGUUGCA&UGUAACAA---GAAGGACAGAAUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a586_TRINITY_DN143_c0_g1_3015_TPlot.pdf
TRINITY_DN14405_c0_g1:564	si_a22	TRINITY_DN14405_c0_g1	553	573	564	-23.50	-16.30	0.693617021276596	9.5	1-6,573-568;8-18,566-556	7-7,567-567[SIL];19-21,555-553[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	AGAAGAGCUAAAGAAGGAUGG&CUAUUUAUUUUUAGUUCUAAG	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN14405_c0_g1_564_TPlot.pdf
TRINITY_DN14410_c0_g1:27	si_a552	TRINITY_DN14410_c0_g1	16	38	27	-33.10	-21.90	0.661631419939577	9	2-4,37-35;5-12,32-25;14-20,23-17	1-1,38-38[UP5];x-x,34-33[BULt];13-13,24-24[SIL];21-21,16-16[UP3]	.(((((((.((((((((..(((.&.)))--)))))))).))))))).	GGGGGAGAAAGGGAAAUUCAGAG&AUCU--AUUUCUUUAUCUCCCCG	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN14410_c0_g1_27_TPlot.pdf
TRINITY_DN14415_c0_g2:179	si_s809	TRINITY_DN14415_c0_g2	168	186	179	-28.50	-20.80	0.729824561403509	7	1-7,186-180;10-19,179-170	8-9,x-x[BULq];20-21,169-168[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	ACUGAGAAGAGG--ACGAAGA&UCUUCGUUACCUUUUCUUAAU	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN14415_c0_g2_179_TPlot.pdf
TRINITY_DN1441_c0_g1:3285	si_s552	TRINITY_DN1441_c0_g1	3271	3294	3285	-21.10	-14.22	0.673933649289099	10.5	1-11,3294-3284;14-21,3278-3271	12-13,3283-3279[AILt]	((((((((.....(((((((((((&)))))))))))---..))))))))	CGAAGAUAAUAAAAGUUCUAUUUU&AAAAUAGAAUU---AAUAUUUUCG	2	0.978364371173897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN1441_c0_g1_3285_TPlot.pdf
TRINITY_DN1441_c0_g1:905	si_s94	TRINITY_DN1441_c0_g1	894	914	905	-35.50	-25.20	0.709859154929577	5.5	2-15,913-900;17-19,898-896	1-1,914-914[UP5];16-16,899-899[SIL];20-21,895-894[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	AUAUUGGAAGCGAGGAAGAAA&CUUCUUCUUCGCUUCGGAUUG	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN1441_c0_g1_905_TPlot.pdf
TRINITY_DN1441_c0_g1:909	si_s78	TRINITY_DN1441_c0_g1	899	918	909	-26.20	-17.70	0.675572519083969	5	2-10,917-909;12-15,908-905;17-21,903-899	1-1,918-918[UP5];11-11,x-x[BULq];16-16,904-904[SIL]	(((((.((((-(((((((((.&.))))))))).)))).)))))	GGAAGCGAGG-AAGAAAAAAU&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1441_c0_g1_909_TPlot.pdf
TRINITY_DN1441_c0_g1:913	si_a325	TRINITY_DN1441_c0_g1	903	922	913	-25.90	-18.30	0.706563706563707	6	3-12,920-911;14-21,910-903	1-2,922-921[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	GCGAGGAA-GAAAAAAUCAAG&CAUGAUUUUUUUAUUCCUUGU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN1441_c0_g1_913_TPlot.pdf
TRINITY_DN14426_c0_g2:1121	si_a153	TRINITY_DN14426_c0_g2	1110	1130	1121	-28.70	-20.60	0.717770034843206	9	1-8,1130-1123;10-19,1121-1112	9-9,1122-1122[SIL];20-21,1111-1110[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	GGAGGUUGGCUUAGAAGCAGC&GUUGUUUUAAGGUCAAUCUAU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN14426_c0_g2_1121_TPlot.pdf
TRINITY_DN14427_c0_g1:1113	si_a556	TRINITY_DN14427_c0_g1	1100	1123	1113	-33.40	-21.80	0.652694610778443	9	1-7,1123-1117;9-12,1114-1111;13-18,1109-1104;19-21,1102-1100	8-8,1116-1115[AILt];x-x,1110-1110[BULt];x-x,1103-1103[BULt]	(((.((((((.((((..(((((((&)))))))-.))))-))))))-)))	UUCAACGGGGCAGAUUUGAGGAAU&AUUUCUU-UAUCU-CCCCGU-GAA	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN14427_c0_g1_1113_TPlot.pdf
TRINITY_DN14427_c0_g1:1392	si_a20	TRINITY_DN14427_c0_g1	1381	1402	1392	-26.70	-18.70	0.700374531835206	9.5	1-4,1402-1399;5-10,1397-1392;12-19,1390-1383	x-x,1398-1398[BULt];11-11,1391-1391[SIL];20-21,1382-1381[UP3]	..((((((((.((((((.((((&))))-)))))).))))))))..	AUGAGCUGGAUAUGAGUCAGGC&GCCU-AUUUAUUUUUAGUUCUA	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN14427_c0_g1_1392_TPlot.pdf
TRINITY_DN14427_c0_g1:1635	si_s257	TRINITY_DN14427_c0_g1	1624	1644	1635	-28.30	-21.40	0.756183745583039	8	2-15,1643-1630	1-1,1644-1644[UP5];16-21,1629-1624[UP3]	......((((((((((((((.&.))))))))))))))......	AAGCGCGAGUGAUAUAUCGGU&CCCGAUAUAUUACUCAAAAAA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s257_TRINITY_DN14427_c0_g1_1635_TPlot.pdf
TRINITY_DN14427_c0_g1:1639	si_s253	TRINITY_DN14427_c0_g1	1628	1649	1639	-29.50	-23.90	0.810169491525424	6.5	2-5,1648-1645;6-19,1643-1630	1-1,1649-1649[UP5];x-x,1644-1644[BULt];20-21,1629-1628[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	GCGAGUGAUAUAUCGGUGGAAA&AUUUC-CCGAUAUAUUACUCAA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN14427_c0_g1_1639_TPlot.pdf
TRINITY_DN14427_c0_g1:1640	si_s252	TRINITY_DN14427_c0_g1	1629	1650	1640	-31.10	-23.90	0.768488745980707	7.5	3-6,1648-1645;7-20,1643-1630	1-2,1650-1649[UP5];x-x,1644-1644[BULt];21-21,1629-1629[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	CGAGUGAUAUAUCGGUGGAAAA&CAUUUC-CCGAUAUAUUACUCA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN14427_c0_g1_1640_TPlot.pdf
TRINITY_DN14427_c0_g1:758	si_a402	TRINITY_DN14427_c0_g1	747	767	758	-22.40	-15.80	0.705357142857143	9	3-14,765-754;16-19,752-749	1-2,767-766[UP5];15-15,753-753[SIL];20-21,748-747[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	CCUAUGCGCGAGACAAUUCGC&UAGAAUUGUUUUGUUUAUAUU	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN14427_c0_g1_758_TPlot.pdf
TRINITY_DN14428_c0_g1:72	si_a609	TRINITY_DN14428_c0_g1	61	81	72	-38.10	-26.10	0.68503937007874	6.5	3-16,79-66;19-21,63-61	1-2,81-80[UP5];17-18,65-64[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	GCUGCGUCGGUUGGAAUUGGU&CGCAAUUCCAAUCGACUAGGC	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a609_TRINITY_DN14428_c0_g1_72_TPlot.pdf
TRINITY_DN14428_c0_g1:74	si_a607	TRINITY_DN14428_c0_g1	62	83	74	-34.30	-23.40	0.682215743440233	9	5-18,79-66;19-21,64-62	1-4,83-80[UP5];x-x,65-65[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	CUGCGUCGGUUGGAAUUGGUCU&UUCGCAAUUCCAAUCGAC-UAG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a607_TRINITY_DN14428_c0_g1_74_TPlot.pdf
TRINITY_DN14428_c0_g1:75	si_a606	TRINITY_DN14428_c0_g1	64	87	75	-32.60	-22.40	0.687116564417178	10.5	1-5,87-83;6-19,79-66	x-x,82-80[BULt];20-21,65-64[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	GCGUCGGUUGGAAUUGGUCUGGAA&UUUCG---CAAUUCCAAUCGACUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN14428_c0_g1_75_TPlot.pdf
TRINITY_DN14428_c0_g1:76	si_a605	TRINITY_DN14428_c0_g1	65	88	76	-32.20	-22.60	0.701863354037267	10.5	2-6,87-83;7-20,79-66	1-1,88-88[UP5];x-x,82-80[BULt];21-21,65-65[UP3]	.((((((((((((((...(((((.&.)))))---)))))))))))))).	CGUCGGUUGGAAUUGGUCUGGAAU&UUUUCG---CAAUUCCAAUCGACU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN14428_c0_g1_76_TPlot.pdf
TRINITY_DN14428_c0_g1:77	si_a604	TRINITY_DN14428_c0_g1	66	89	77	-31.60	-22.30	0.705696202531646	11.5	3-7,87-83;8-21,79-66	1-2,89-88[UP5];x-x,82-80[BULt]	((((((((((((((...(((((..&..)))))---))))))))))))))	GUCGGUUGGAAUUGGUCUGGAAUA&AUUUUCG---CAAUUCCAAUCGAC	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN14428_c0_g1_77_TPlot.pdf
TRINITY_DN1442_c0_g1:424	si_a73	TRINITY_DN1442_c0_g1	413	433	424	-21.90	-14.90	0.680365296803653	7	1-6,433-428;8-12,426-422;15-21,419-413	7-7,427-427[SIL];13-14,421-420[SIL]	(((((((..(((((.((((((&)))))).)))))..)))))))	AGUGAUGUCGGACAUUUUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.99999999581768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1442_c0_g1_424_TPlot.pdf
TRINITY_DN1442_c0_g1:425	si_a72	TRINITY_DN1442_c0_g1	414	434	425	-21.90	-15.00	0.684931506849315	6.5	1-7,434-428;9-13,426-422;16-21,419-414	8-8,427-427[SIL];14-15,421-420[SIL]	((((((..(((((.(((((((&))))))).)))))..))))))	GUGAUGUCGGACAUUUUGAAA&UUUCAAAUUGUUUUUCAUUAU	4	0.999999996956449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1442_c0_g1_425_TPlot.pdf
TRINITY_DN14438_c0_g1:663	si_a462	TRINITY_DN14438_c0_g1	652	672	663	-21.20	-14.00	0.660377358490566	6	1-4,672-669;6-15,667-658;18-20,655-653	5-5,668-668[SIL];16-17,657-656[SIL];21-21,652-652[UP3]	.(((..((((((((((.((((&)))).))))))))))..))).	GAAUGUCAUAUUGUAUUUAAC&GUUAUAUAUAAUAUGUAAUUA	3	0.999889416257926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN14438_c0_g1_663_TPlot.pdf
TRINITY_DN14438_c0_g1:664	si_a461	TRINITY_DN14438_c0_g1	653	673	664	-21.50	-14.60	0.67906976744186	5	1-5,673-669;7-16,667-658;19-21,655-653	6-6,668-668[SIL];17-18,657-656[SIL]	(((..((((((((((.(((((&))))).))))))))))..)))	AAUGUCAUAUUGUAUUUAACA&UGUUAUAUAUAAUAUGUAAUU	2	0.966553182246443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN14438_c0_g1_664_TPlot.pdf
TRINITY_DN14438_c0_g1:665	si_a460	TRINITY_DN14438_c0_g1	654	674	665	-21.60	-14.60	0.675925925925926	5	1-6,674-669;8-17,667-658;20-21,655-654	7-7,668-668[SIL];18-19,657-656[SIL]	((..((((((((((.((((((&)))))).))))))))))..))	AUGUCAUAUUGUAUUUAACAA&UUGUUAUAUAUAAUAUGUAAU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN14438_c0_g1_665_TPlot.pdf
TRINITY_DN14439_c0_g1:113	si_a319	TRINITY_DN14439_c0_g1	102	122	113	-22.40	-15.50	0.691964285714286	9.5	2-9,121-114;11-19,112-104	1-1,122-122[UP5];10-10,113-113[SIL];20-21,103-102[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CCUGGAAGAAUGAUGGGUGGU&UUUAUCCAUGAUUUUUUUAUU	4	0.999999998797842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN14439_c0_g1_113_TPlot.pdf
TRINITY_DN14439_c0_g1:2397	si_s485	TRINITY_DN14439_c0_g1	2386	2406	2397	-18.10	-13.20	0.729281767955801	6.5	1-15,2406-2392;17-19,2390-2388	16-16,2391-2391[SIL];20-21,2387-2386[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	GGUGUCUUUAAGUGAAUAUGG&CUAUAUUUAUUUAAAUAUAAA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN14439_c0_g1_2397_TPlot.pdf
TRINITY_DN14439_c0_g1:2398	si_s484	TRINITY_DN14439_c0_g1	2387	2407	2398	-20.50	-13.50	0.658536585365854	6.5	2-16,2406-2392;18-20,2390-2388	1-1,2407-2407[UP5];17-17,2391-2391[SIL];21-21,2387-2387[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	GUGUCUUUAAGUGAAUAUGGU&CCUAUAUUUAUUUAAAUAUAA	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN14439_c0_g1_2398_TPlot.pdf
TRINITY_DN14439_c0_g1:2444	si_a76	TRINITY_DN14439_c0_g1	2433	2453	2444	-21.20	-14.30	0.674528301886792	6.5	1-6,2453-2448;8-18,2446-2436	7-7,2447-2447[SIL];19-21,2435-2433[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	ACAGGUGAUGAAAAUCAAUUU&AAAUUGUUUUUCAUUAUUAAG	3	0.999999998680878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN14439_c0_g1_2444_TPlot.pdf
TRINITY_DN14439_c0_g1:557	si_s728	TRINITY_DN14439_c0_g1	546	566	557	-31.90	-23.30	0.730407523510972	3.5	1-14,566-553;16-17,551-550;19-21,548-546	15-15,552-552[SIL];18-18,549-549[SIL]	(((.((.((((((((((((((&)))))))))))))).)).)))	AUUGAUGCGUCUGGAUAAUAU&AUAUUAUCUAGACGGGUGAAU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN14439_c0_g1_557_TPlot.pdf
TRINITY_DN1443_c0_g1:2208	si_a415	TRINITY_DN1443_c0_g1	2197	2217	2208	-18.10	-11.80	0.651933701657459	9	2-17,2216-2201	1-1,2217-2217[UP5];18-21,2200-2197[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUAAUUUAUUUAGAUGUGGU&UUUAUAUUUAAAUAAAUAUAG	2	0.996067721423274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN1443_c0_g1_2208_TPlot.pdf
TRINITY_DN1443_c0_g1:2209	si_a414	TRINITY_DN1443_c0_g1	2198	2218	2209	-18.10	-11.80	0.651933701657459	10	3-18,2216-2201	1-2,2218-2217[UP5];19-21,2200-2198[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUAAUUUAUUUAGAUGUGGUC&GUUUAUAUUUAAAUAAAUAUA	4	0.999999917251805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN1443_c0_g1_2209_TPlot.pdf
TRINITY_DN14441_c0_g1:1961	si_a395	TRINITY_DN14441_c0_g1	1950	1970	1961	-24.70	-17.10	0.692307692307692	7	3-21,1968-1950	1-2,1970-1969[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AUAAAAUGGUUCUAUGUUUAU&AAGAAUAUAGAAUUGUUUUGU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN14441_c0_g1_1961_TPlot.pdf
TRINITY_DN14441_c0_g1:615	si_a76	TRINITY_DN14441_c0_g1	604	624	615	-21.20	-14.00	0.660377358490566	11	4-18,621-607	1-3,624-622[UP5];19-21,606-604[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACAAAUGGUGGGAAACAAAUU&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999991466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN14441_c0_g1_615_TPlot.pdf
TRINITY_DN14441_c0_g1:657	si_s803	TRINITY_DN14441_c0_g1	646	666	657	-26.00	-17.50	0.673076923076923	11.5	4-8,663-659;10-21,657-646	1-3,666-664[UP5];9-9,658-658[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGGAGGUGAUGGUGAUGAUGG&AUUUUAUCUUCGUUACCUUUU	2	0.999999669590304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN14441_c0_g1_657_TPlot.pdf
TRINITY_DN14441_c0_g1:687	si_s896	TRINITY_DN14441_c0_g1	676	696	687	-31.60	-23.90	0.756329113924051	9.5	3-14,694-683;17-20,680-677	1-2,696-695[UP5];15-16,682-681[SIL];21-21,676-676[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	AGAGAAGGAGGAGGAGGCCGA&UAGGCUUUCUCUUCAAUUUCA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN14441_c0_g1_687_TPlot.pdf
TRINITY_DN14441_c0_g1:688	si_s895	TRINITY_DN14441_c0_g1	677	697	688	-31.10	-23.40	0.752411575562701	10	4-15,694-683;18-21,680-677	1-3,697-695[UP5];16-17,682-681[SIL]	((((..((((((((((((...&...))))))))))))..))))	GAGAAGGAGGAGGAGGCCGAA&AUAGGCUUUCUCUUCAAUUUC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN14441_c0_g1_688_TPlot.pdf
TRINITY_DN14441_c0_g1:689	si_s894	TRINITY_DN14441_c0_g1	678	698	689	-29.10	-20.50	0.70446735395189	14.5	5-16,694-683	1-4,698-695[UP5];17-21,682-678[UP3]	.....((((((((((((....&....)))))))))))).....	AGAAGGAGGAGGAGGCCGAAA&AAUAGGCUUUCUCUUCAAUUU	2	0.989356908938648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN14441_c0_g1_689_TPlot.pdf
TRINITY_DN14441_c0_g1:692	si_s891	TRINITY_DN14441_c0_g1	681	701	692	-29.60	-20.50	0.692567567567568	17	8-19,694-683	1-7,701-695[UP5];20-21,682-681[UP3]	..((((((((((((.......&.......))))))))))))..	AGGAGGAGGAGGCCGAAAGGG&AUAAAUAGGCUUUCUCUUCAA	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN14441_c0_g1_692_TPlot.pdf
TRINITY_DN14441_c0_g1:693	si_s890	TRINITY_DN14441_c0_g1	682	702	693	-29.50	-20.50	0.694915254237288	18	9-20,694-683	1-8,702-695[UP5];21-21,682-682[UP3]	.((((((((((((........&........)))))))))))).	GGAGGAGGAGGCCGAAAGGGA&AAUAAAUAGGCUUUCUCUUCA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN14441_c0_g1_693_TPlot.pdf
TRINITY_DN14441_c0_g1:694	si_s889	TRINITY_DN14441_c0_g1	683	703	694	-28.80	-20.10	0.697916666666667	18.5	10-21,694-683	1-9,703-695[UP5]	((((((((((((.........&.........))))))))))))	GAGGAGGAGGCCGAAAGGGAG&AAAUAAAUAGGCUUUCUCUUC	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN14441_c0_g1_694_TPlot.pdf
TRINITY_DN14441_c0_g1:695	si_s80	TRINITY_DN14441_c0_g1	682	704	695	-28.20	-19.80	0.702127659574468	10.5	2-10,703-695;11-21,692-682	1-1,704-704[UP5];x-x,694-693[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	GGAGGAGGAGGCCGAAAGGGAGC&UUUUUCUUUC--CUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN14441_c0_g1_695_TPlot.pdf
TRINITY_DN14441_c0_g1:696	si_s79	TRINITY_DN14441_c0_g1	683	705	696	-26.20	-17.50	0.66793893129771	12	3-11,703-695;12-21,692-683	1-2,705-704[UP5];x-x,694-693[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	GAGGAGGAGGCCGAAAGGGAGCG&UUUUUUCUUUC--CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN14441_c0_g1_696_TPlot.pdf
TRINITY_DN14441_c0_g1:733	si_s90	TRINITY_DN14441_c0_g1	720	742	733	-35.30	-24.30	0.688385269121813	6	1-10,742-733;11-15,731-727;16-20,725-721	x-x,732-732[BULt];x-x,726-726[BULt];21-21,720-720[UP3]	.(((((.(((((.((((((((((&))))))))))-)))))-))))).	GUGAGGCCGAAGAAAGAAGGAAG&CUUUCUUCUU-CUUCG-CUUCGG	2	0.999986682428738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN14441_c0_g1_733_TPlot.pdf
TRINITY_DN14441_c0_g1:734	si_s89	TRINITY_DN14441_c0_g1	721	743	734	-35.30	-27.10	0.767705382436261	5	1-11,743-733;12-16,731-727;17-21,725-721	x-x,732-732[BULt];x-x,726-726[BULt]	(((((.(((((.(((((((((((&)))))))))))-)))))-)))))	UGAGGCCGAAGAAAGAAGGAAGG&CCUUUCUUCUU-CUUCG-CUUCG	0	0.0695089045087389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN14441_c0_g1_734_TPlot.pdf
TRINITY_DN14441_c0_g1:735	si_s88	TRINITY_DN14441_c0_g1	722	744	735	-34.80	-28.00	0.804597701149425	4.5	1-12,744-733;13-17,731-727;18-21,725-722	x-x,732-732[BULt];x-x,726-726[BULt]	((((.(((((.((((((((((((&))))))))))))-)))))-))))	GAGGCCGAAGAAAGAAGGAAGGA&UCCUUUCUUCUU-CUUCG-CUUC	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN14441_c0_g1_735_TPlot.pdf
TRINITY_DN14441_c0_g1:736	si_s87	TRINITY_DN14441_c0_g1	723	745	736	-32.90	-25.20	0.765957446808511	4.5	2-13,744-733;14-18,731-727;19-21,725-723	1-1,745-745[UP5];x-x,732-732[BULt];x-x,726-726[BULt]	(((.(((((.((((((((((((.&.))))))))))))-)))))-)))	AGGCCGAAGAAAGAAGGAAGGAG&UUCCUUUCUUCUU-CUUCG-CUU	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN14441_c0_g1_736_TPlot.pdf
TRINITY_DN14441_c0_g1:737	si_s86	TRINITY_DN14441_c0_g1	724	746	737	-32.90	-26.10	0.793313069908815	4.5	1-14,746-733;15-19,731-727;20-21,725-724	x-x,732-732[BULt];x-x,726-726[BULt]	((.(((((.((((((((((((((&))))))))))))))-)))))-))	GGCCGAAGAAAGAAGGAAGGAGA&UUUCCUUUCUUCUU-CUUCG-CU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN14441_c0_g1_737_TPlot.pdf
TRINITY_DN14441_c0_g1:739	si_s84	TRINITY_DN14441_c0_g1	727	748	739	-32.30	-25.30	0.78328173374613	6	3-16,746-733;17-21,731-727	1-2,748-747[UP5];x-x,732-732[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	CGAAGAAAGAAGGAAGGAGAAG&UCUUUCCUUUCUUCUU-CUUCG	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN14441_c0_g1_739_TPlot.pdf
TRINITY_DN14441_c0_g1:740	si_s83	TRINITY_DN14441_c0_g1	728	749	740	-30.90	-23.30	0.754045307443366	8	4-17,746-733;18-21,731-728	1-3,749-747[UP5];x-x,732-732[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	GAAGAAAGAAGGAAGGAGAAGC&UUCUUUCCUUUCUUCUU-CUUC	3	0.99999520307726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN14441_c0_g1_740_TPlot.pdf
TRINITY_DN14441_c0_g1:742	si_s69	TRINITY_DN14441_c0_g1	731	750	742	-23.40	-17.00	0.726495726495727	8	3-7,748-744;9-21,743-731	1-2,750-749[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAAGAAGGAAGG-AGAAGCA&AACUUCUAUUUUUUUUCUUUC	3	0.999999999987207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN14441_c0_g1_742_TPlot.pdf
TRINITY_DN14441_c0_g1:753	si_s73	TRINITY_DN14441_c0_g1	735	762	753	-24.00	-18.60	0.775	18	1-11,762-752;12-21,744-735	x-x,751-745[BULt]	((((((((((.......(((((((((((&)))))))))))-------))))))))))	GAAGGAAGGAGAAGCACAGAAAGAUGGA&UCUAUUUUUUU-------UCUUUCCUUU	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN14441_c0_g1_753_TPlot.pdf
TRINITY_DN14441_c0_g1:754	si_s72	TRINITY_DN14441_c0_g1	736	763	754	-24.10	-18.40	0.763485477178423	17.5	1-12,763-752;13-21,744-736	x-x,751-745[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	AAGGAAGGAGAAGCACAGAAAGAUGGAA&UUCUAUUUUUUU-------UCUUUCCUU	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14441_c0_g1_754_TPlot.pdf
TRINITY_DN14441_c0_g1:755	si_s71	TRINITY_DN14441_c0_g1	737	764	755	-25.70	-20.40	0.793774319066148	10.5	1-13,764-752;14-21,744-737	x-x,751-745[BULt]	((((((((.......(((((((((((((&)))))))))))))-------))))))))	AGGAAGGAGAAGCACAGAAAGAUGGAAG&CUUCUAUUUUUUU-------UCUUUCCU	2	0.95546755294484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14441_c0_g1_755_TPlot.pdf
TRINITY_DN14441_c0_g1:756	si_a786	TRINITY_DN14441_c0_g1	742	765	756	-26.60	-20.74	0.779699248120301	6.5	1-14,765-752;16-21,747-742	15-15,751-748[AILt]	((((((....((((((((((((((&))))))))))))))---.))))))	GGAGAAGCACAGAAAGAUGGAAGA&UCUUCUAUUUUUCU---AUUUUCC	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN14441_c0_g1_756_TPlot.pdf
TRINITY_DN14441_c0_g1:757	si_a785	TRINITY_DN14441_c0_g1	743	766	757	-25.90	-17.64	0.681081081081081	7.5	2-15,765-752;17-21,747-743	1-1,766-766[UP5];16-16,751-748[AILt]	(((((....((((((((((((((.&.))))))))))))))---.)))))	GAGAAGCACAGAAAGAUGGAAGAA&CUCUUCUAUUUUUCU---AUUUUC	4	0.999999999999919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14441_c0_g1_757_TPlot.pdf
TRINITY_DN14441_c0_g1:758	si_a784	TRINITY_DN14441_c0_g1	747	767	758	-24.70	-16.90	0.684210526315789	10	3-16,765-752	1-2,767-766[UP5];17-21,751-747[UP3]	.....((((((((((((((..&..)))))))))))))).....	AGCACAGAAAGAUGGAAGAAG&ACUCUUCUAUUUUUCUAUUUU	2	0.999999959171499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14441_c0_g1_758_TPlot.pdf
TRINITY_DN14441_c0_g1:759	si_a783	TRINITY_DN14441_c0_g1	748	768	759	-24.70	-16.90	0.684210526315789	11	4-17,765-752	1-3,768-766[UP5];18-21,751-748[UP3]	....((((((((((((((...&...))))))))))))))....	GCACAGAAAGAUGGAAGAAGA&AACUCUUCUAUUUUUCUAUUU	3	0.99999999996945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN14441_c0_g1_759_TPlot.pdf
TRINITY_DN14441_c0_g1:770	si_s82	TRINITY_DN14441_c0_g1	759	781	770	-28.90	-19.80	0.685121107266436	8.5	3-7,779-775;8-8,773-773;9-20,771-760	1-2,781-780[UP5];x-x,774-774[BULt];x-x,772-772[BULt];21-21,759-759[UP3]	.((((((((((((.(.(((((..&..)))))-)-)))))))))))).	UGGAAGAAGAAAGAGAAAAGAUG&UUUCUUU-C-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN14441_c0_g1_770_TPlot.pdf
TRINITY_DN14441_c0_g1:771	si_s81	TRINITY_DN14441_c0_g1	760	782	771	-28.90	-19.80	0.685121107266436	9.5	4-8,779-775;9-9,773-773;10-21,771-760	1-3,782-780[UP5];x-x,774-774[BULt];x-x,772-772[BULt]	((((((((((((.(.(((((...&...)))))-)-))))))))))))	GGAAGAAGAAAGAGAAAAGAUGA&UUUUCUUU-C-CUUUCUUCUUCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN14441_c0_g1_771_TPlot.pdf
TRINITY_DN14441_c0_g1:772	si_s75	TRINITY_DN14441_c0_g1	759	781	772	-24.00	-17.20	0.716666666666667	6	1-15,781-767;16-20,764-760	x-x,766-765[BULt];21-21,759-759[UP3]	.(((((..(((((((((((((((&)))))))))))))))--))))).	UGGAAGAAGAAAGAGAAAAGAUG&UAUUUUUUUUCUUUC--CUUUCU	2	0.999999999997487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN14441_c0_g1_772_TPlot.pdf
TRINITY_DN14441_c0_g1:773	si_s74	TRINITY_DN14441_c0_g1	760	782	773	-25.00	-17.50	0.7	6.5	2-16,781-767;17-21,764-760	1-1,782-782[UP5];x-x,766-765[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GGAAGAAGAAAGAGAAAAGAUGA&CUAUUUUUUUUCUUUC--CUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN14441_c0_g1_773_TPlot.pdf
TRINITY_DN14441_c0_g1:795	si_a317	TRINITY_DN14441_c0_g1	784	804	795	-24.30	-16.60	0.683127572016461	6.5	2-9,803-796;11-19,794-786	1-1,804-804[UP5];10-10,795-795[SIL];20-21,785-784[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	GCAAGAAAUCAGGGAUAAGUA&GAUUUAUCCAUGAUUUUUUUA	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN14441_c0_g1_795_TPlot.pdf
TRINITY_DN14442_c0_g1:226	si_s817	TRINITY_DN14442_c0_g1	215	235	226	-24.50	-16.90	0.689795918367347	7	2-14,234-222;16-17,220-219	1-1,235-235[UP5];15-15,221-221[SIL];18-21,218-215[UP3]	....((.(((((((((((((.&.))))))))))))).))....	ACUCCAAUAUUAAGAAGAGGA&ACCUUUUCUUAAUAAUGAAAA	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN14442_c0_g1_226_TPlot.pdf
TRINITY_DN14442_c0_g1:536	si_s73	TRINITY_DN14442_c0_g1	525	546	536	-24.00	-16.82	0.700833333333333	11	1-8,546-539;12-19,534-527	9-11,538-535[AILt];20-21,526-525[UP3]	..((((((((....((((((((&))))))))-...))))))))..	UUAGGAAAGAUUAUAAAGUAGA&UCUAUUUU-UUUUCUUUCCUUU	2	0.999999999998948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN14442_c0_g1_536_TPlot.pdf
TRINITY_DN14442_c0_g1:537	si_s72	TRINITY_DN14442_c0_g1	526	547	537	-24.10	-17.72	0.735269709543568	10	1-9,547-539;13-20,534-527	10-12,538-535[AILt];21-21,526-526[UP3]	.((((((((....(((((((((&)))))))))-...)))))))).	UAGGAAAGAUUAUAAAGUAGAA&UUCUAUUUU-UUUUCUUUCCUU	3	0.999999999899138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14442_c0_g1_537_TPlot.pdf
TRINITY_DN14442_c0_g1:539	si_s71	TRINITY_DN14442_c0_g1	527	548	539	-25.70	-20.62	0.802334630350195	8	1-10,548-539;14-21,534-527	11-13,538-535[AILt]	((((((((....((((((((((&))))))))))-...))))))))	AGGAAAGAUUAUAAAGUAGAAG&CUUCUAUUUU-UUUUCUUUCCU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14442_c0_g1_539_TPlot.pdf
TRINITY_DN14442_c0_g1:540	si_s70	TRINITY_DN14442_c0_g1	528	549	540	-25.80	-19.52	0.756589147286822	8	2-11,548-539;15-21,534-528	1-1,549-549[UP5];12-14,538-535[AILt]	(((((((....((((((((((.&.))))))))))-...)))))))	GGAAAGAUUAUAAAGUAGAAGA&ACUUCUAUUUU-UUUUCUUUCC	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN14442_c0_g1_540_TPlot.pdf
TRINITY_DN14442_c0_g1:582	si_s564	TRINITY_DN14442_c0_g1	568	591	582	-31.20	-20.70	0.663461538461538	10	2-14,590-578;15-18,574-571	1-1,591-591[UP5];x-x,577-575[BULt];19-21,570-568[UP3]	...((((...(((((((((((((.&.)))))))))))))---))))...	CAAUCCUUGGUGUCCUGAAGAUGG&AUAUUUUCGGGACA---AGGAAUA	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s564_TRINITY_DN14442_c0_g1_582_TPlot.pdf
TRINITY_DN14442_c0_g1:809	si_a142	TRINITY_DN14442_c0_g1	798	818	809	-23.50	-15.90	0.676595744680851	8.5	2-15,817-804	1-1,818-818[UP5];16-21,803-798[UP3]	......((((((((((((((.&.))))))))))))))......	CUAUUUCAGCAAUGAUUAAUG&AAUUAAUCGUUGUUGUUUUAA	2	0.999999376663204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN14442_c0_g1_809_TPlot.pdf
TRINITY_DN14442_c0_g1:810	si_a141	TRINITY_DN14442_c0_g1	799	819	810	-23.80	-15.90	0.668067226890756	9.5	3-16,817-804	1-2,819-818[UP5];17-21,803-799[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUUUCAGCAAUGAUUAAUGC&UAAUUAAUCGUUGUUGUUUUA	2	0.999999442717865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN14442_c0_g1_810_TPlot.pdf
TRINITY_DN14448_c0_g1:1484	si_a320	TRINITY_DN14448_c0_g1	1473	1493	1484	-24.40	-16.60	0.680327868852459	5.5	2-8,1492-1486;10-17,1484-1477;19-21,1475-1473	1-1,1493-1493[UP5];9-9,1485-1485[SIL];18-18,1476-1476[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	GAGAAAAAAGAUGAUGGAUAC&UUAUCCAUGAUUUUUUUAUUC	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN14448_c0_g1_1484_TPlot.pdf
TRINITY_DN1444_c0_g1:2919	si_s282	TRINITY_DN1444_c0_g1	2908	2927	2919	-33.10	-23.30	0.70392749244713	6.5	3-9,2925-2919;11-21,2918-2908	1-2,2927-2926[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	AAUCGACUGGG-GUAUUGUCA&ACAUAAUACGCCUAGUCGAUU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s282_TRINITY_DN1444_c0_g1_2919_TPlot.pdf
TRINITY_DN1444_c0_g1:2943	si_a73	TRINITY_DN1444_c0_g1	2932	2952	2943	-21.90	-19.30	0.881278538812786	8	1-18,2952-2935	19-21,2934-2932[UP3]	...((((((((((((((((((&))))))))))))))))))...	CAAGGUGGAGAGCAGUUUGAG&UUCAAAUUGUUUUUCAUUAUU	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1444_c0_g1_2943_TPlot.pdf
TRINITY_DN1444_c0_g1:2945	si_a71	TRINITY_DN1444_c0_g1	2934	2954	2945	-23.30	-19.40	0.832618025751073	9	3-20,2952-2935	1-2,2954-2953[UP5];21-21,2934-2934[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGGUGGAGAGCAGUUUGAGCA&CUUUCAAAUUGUUUUUCAUUA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1444_c0_g1_2945_TPlot.pdf
TRINITY_DN1444_c0_g1:2947	si_a69	TRINITY_DN1444_c0_g1	2936	2956	2947	-24.00	-18.60	0.775	11	5-21,2952-2936	1-4,2956-2953[UP5]	(((((((((((((((((....&....)))))))))))))))))	GUGGAGAGCAGUUUGAGCACU&UUCUUUCAAAUUGUUUUUCAU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1444_c0_g1_2947_TPlot.pdf
TRINITY_DN1444_c0_g1:2948	si_a68	TRINITY_DN1444_c0_g1	2937	2957	2948	-25.40	-17.10	0.673228346456693	12.5	6-21,2952-2937	1-5,2957-2953[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGGAGAGCAGUUUGAGCACUU&CUUCUUUCAAAUUGUUUUUCA	2	0.999999229783606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1444_c0_g1_2948_TPlot.pdf
TRINITY_DN14458_c0_g1:939	si_s456	TRINITY_DN14458_c0_g1	927	950	939	-29.30	-19.10	0.651877133105802	10.5	3-7,948-944;8-12,941-937;13-21,935-927	1-2,950-949[UP5];x-x,943-942[BULt];x-x,936-936[BULt]	(((((((((.(((((..(((((..&..)))))--)))))-)))))))))	GGGUGUGGGUAUAAUAAUGUUGGU&AACAACA--AUUAU-CUCAUAUCC	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s456_TRINITY_DN14458_c0_g1_939_TPlot.pdf
TRINITY_DN1445_c0_g1:4670	si_s489	TRINITY_DN1445_c0_g1	4659	4679	4670	-17.90	-12.20	0.681564245810056	3	2-14,4678-4666;17-21,4663-4659	1-1,4679-4679[UP5];15-16,4665-4664[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UUUGUAAAUAUUUAAAUAAAG&AUUUAUUUAAAUAUAAACAAA	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN1445_c0_g1_4670_TPlot.pdf
TRINITY_DN14463_c0_g1:309	si_a812	TRINITY_DN14463_c0_g1	298	318	309	-34.80	-27.70	0.795977011494253	2	1-17,318-302;19-21,300-298	18-18,301-301[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	UCUGUUUUUCUUCUUCGCUUC&GAAGCGAAGAAGAAGAAAGGA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN14463_c0_g1_309_TPlot.pdf
TRINITY_DN14463_c0_g1:4539	si_a478	TRINITY_DN14463_c0_g1	4528	4548	4539	-21.30	-13.90	0.652582159624413	11	4-16,4545-4533	1-3,4548-4546[UP5];17-21,4532-4528[UP3]	.....(((((((((((((...&...))))))))))))).....	GUGACCUAUAUAACAAUGUAA&AAUUAUUGUUAUAUAGAAUAU	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN14463_c0_g1_4539_TPlot.pdf
TRINITY_DN14463_c0_g1:675	si_s808	TRINITY_DN14463_c0_g1	664	691	675	-28.60	-21.30	0.744755244755245	18.5	1-9,691-683;10-19,675-666	x-x,682-676[BULt];20-21,665-664[UP3]	..((((((((((.......(((((((((&)))))))))-------))))))))))..	GGAAGAAGAGGUCCUGGAGGACGAGGAU&AUCUUCGUU-------ACCUUUUCUUAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN14463_c0_g1_675_TPlot.pdf
TRINITY_DN14466_c0_g2:590	si_s8	TRINITY_DN14466_c0_g2	578	601	590	-21.30	-13.90	0.652582159624413	8	1-7,601-595;8-16,592-584;17-21,582-578	x-x,594-593[BULt];x-x,583-583[BULt]	(((((.(((((((((..(((((((&)))))))--)))))))))-)))))	AAUGUAAGUGAUGAUUCAAGUAGU&AUUACUU--AUUAUUACU-AUAUU	1	0.189957421909534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN14466_c0_g2_590_TPlot.pdf
TRINITY_DN1446_c0_g1:1832	si_s72	TRINITY_DN1446_c0_g1	1821	1846	1832	-24.10	-16.00	0.663900414937759	15.5	1-5,1846-1842;6-19,1836-1823	x-x,1841-1837[BULt];20-21,1822-1821[UP3]	..((((((((((((((.....(((((&)))))-----))))))))))))))..	CUGGAGGGAAAAAAGAGCCGCUGGAG&UUCUA-----UUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1446_c0_g1_1832_TPlot.pdf
TRINITY_DN1446_c0_g1:2219	si_s72	TRINITY_DN1446_c0_g1	2208	2233	2219	-24.10	-16.00	0.663900414937759	15.5	1-5,2233-2229;6-19,2223-2210	x-x,2228-2224[BULt];20-21,2209-2208[UP3]	..((((((((((((((.....(((((&)))))-----))))))))))))))..	CUGGAGGGAAAAAAGAGCCGCUGGAG&UUCUA-----UUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1446_c0_g1_2219_TPlot.pdf
TRINITY_DN14475_c0_g1:3242	si_a334	TRINITY_DN14475_c0_g1	3229	3251	3242	-30.70	-20.40	0.664495114006515	11	1-11,3251-3241;12-14,3239-3237;15-17,3235-3233	x-x,3240-3240[BULt];x-x,3236-3236[BULt];18-21,3232-3229[UP3]	....(((.(((.(((((((((((&)))))))))))-)))-)))....	GAUCUCGAGGAGCGAGGAGUGGA&UUUAUUCCUUG-UCC-CGAAAAU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN14475_c0_g1_3242_TPlot.pdf
TRINITY_DN14475_c0_g2:5555	si_a764	TRINITY_DN14475_c0_g2	5544	5564	5555	-28.90	-19.20	0.664359861591695	6.5	1-13,5564-5552;14-15,5550-5549;17-20,5548-5545	x-x,5551-5551[BULt];16-16,x-x[BULq];21-21,5544-5544[UP3]	.((((-((.(((((((((((((&)))))))))))))-)).)))).	GUGGA-CACGUCAAGGACCCAG&UUGGGUUUUUGAU-UGAUUCAA	4	0.999999949580118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN14475_c0_g2_5555_TPlot.pdf
TRINITY_DN14475_c0_g2:5609	si_a789	TRINITY_DN14475_c0_g2	5597	5618	5609	-24.80	-16.32	0.658064516129032	10	2-11,5617-5608;15-21,5603-5597	1-1,5618-5618[UP5];12-14,5607-5604[AILt]	(((((((....((((((((((.&.))))))))))-...)))))))	GUUGGGACAUGGGAAGAAUAGC&UCUAUUUUUCU-AUUUUCCAAU	4	0.999999999999925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN14475_c0_g2_5609_TPlot.pdf
TRINITY_DN14475_c0_g2:7053	si_a106	TRINITY_DN14475_c0_g2	7040	7062	7053	-31.20	-22.86	0.732692307692308	11.5	2-10,7061-7053;14-21,7047-7040	1-1,7062-7062[UP5];11-13,7052-7048[AILt]	((((((((.....(((((((((.&.)))))))))--...))))))))	CGAGCUCGGCGAGUUUGUCUUCA&CGAAGAUAAA--AUACGAGCUUG	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a106_TRINITY_DN14475_c0_g2_7053_TPlot.pdf
TRINITY_DN14475_c0_g2:7054	si_a105	TRINITY_DN14475_c0_g2	7041	7063	7054	-30.30	-20.86	0.688448844884488	12.5	3-11,7061-7053;15-21,7047-7041	1-2,7063-7062[UP5];12-14,7052-7048[AILt]	(((((((.....(((((((((..&..)))))))))--...)))))))	GAGCUCGGCGAGUUUGUCUUCAG&ACGAAGAUAAA--AUACGAGCUU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a105_TRINITY_DN14475_c0_g2_7054_TPlot.pdf
TRINITY_DN14475_c0_g2:7787	si_s638	TRINITY_DN14475_c0_g2	7770	7796	7787	-40.30	-26.20	0.650124069478908	13	1-5,7796-7792;7-14,7790-7783;15-18,7776-7773	6-6,7791-7791[SIL];x-x,7782-7777[BULt];19-21,7772-7770[UP3]	...((((......((((((((.(((((&))))).))))))))------))))...	GCGCGAGAAUGGAGGCAGGCGGCUACG&CGUAGGCGUUUGCC------CUCGAUA	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN14475_c0_g2_7787_TPlot.pdf
TRINITY_DN14475_c0_g2:7789	si_s636	TRINITY_DN14475_c0_g2	7772	7798	7789	-40.80	-27.90	0.683823529411765	12	1-7,7798-7792;9-16,7790-7783;17-20,7776-7773	8-8,7791-7791[SIL];x-x,7782-7777[BULt];21-21,7772-7772[UP3]	.((((......((((((((.(((((((&))))))).))))))))------)))).	GCGAGAAUGGAGGCAGGCGGCUACGGA&UUCGUAGGCGUUUGCC------CUCGA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN14475_c0_g2_7789_TPlot.pdf
TRINITY_DN14476_c0_g1:1000	si_a493	TRINITY_DN14476_c0_g1	987	1009	1000	-29.50	-20.80	0.705084745762712	8.5	1-3,1009-1007;5-14,1005-996;15-19,993-989	4-4,1006-1006[SIL];x-x,995-994[BULt];20-21,988-987[UP3]	..(((((..((((((((((.(((&))).))))))))))--)))))..	ACGACGAGAGAAGCGACGUCUUC&GAAUAUGUCGUUUU--UCGUCUU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN14476_c0_g1_1000_TPlot.pdf
TRINITY_DN14476_c0_g1:1001	si_a492	TRINITY_DN14476_c0_g1	988	1010	1001	-30.20	-20.90	0.69205298013245	8.5	2-4,1009-1007;6-15,1005-996;16-20,993-989	1-1,1010-1010[UP5];5-5,1006-1006[SIL];x-x,995-994[BULt];21-21,988-988[UP3]	.(((((..((((((((((.(((.&.))).))))))))))--))))).	CGACGAGAGAAGCGACGUCUUCA&AGAAUAUGUCGUUUU--UCGUCU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN14476_c0_g1_1001_TPlot.pdf
TRINITY_DN14476_c0_g1:1003	si_a490	TRINITY_DN14476_c0_g1	992	1012	1003	-28.10	-18.30	0.651245551601424	11	4-6,1009-1007;8-19,1005-994	1-3,1012-1010[UP5];7-7,1006-1006[SIL];20-21,993-992[UP3]	..((((((((((((.(((...&...))).))))))))))))..	GAGAGAAGCGACGUCUUCAGC&AUAGAAUAUGUCGUUUUUCGU	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN14476_c0_g1_1003_TPlot.pdf
TRINITY_DN14476_c0_g1:1004	si_a489	TRINITY_DN14476_c0_g1	993	1013	1004	-27.70	-18.30	0.660649819494585	12	5-7,1009-1007;9-20,1005-994	1-4,1013-1010[UP5];8-8,1006-1006[SIL];21-21,993-993[UP3]	.((((((((((((.(((....&....))).)))))))))))).	AGAGAAGCGACGUCUUCAGCU&UAUAGAAUAUGUCGUUUUUCG	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN14476_c0_g1_1004_TPlot.pdf
TRINITY_DN14476_c0_g1:1005	si_a488	TRINITY_DN14476_c0_g1	994	1014	1005	-26.40	-17.90	0.678030303030303	13	6-8,1009-1007;10-21,1005-994	1-5,1014-1010[UP5];9-9,1006-1006[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GAGAAGCGACGUCUUCAGCUA&AUAUAGAAUAUGUCGUUUUUC	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN14476_c0_g1_1005_TPlot.pdf
TRINITY_DN14476_c0_g1:1254	si_s87	TRINITY_DN14476_c0_g1	1243	1265	1254	-32.90	-21.60	0.656534954407295	11	4-9,1262-1257;10-19,1254-1245	1-3,1265-1263[UP5];x-x,1256-1255[BULt];20-21,1244-1243[UP3]	..((((((((((..((((((...&...))))))--))))))))))..	ACGCGAAGAAGACAAGAAAGCCA&UUCCUUUCU--UCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN14476_c0_g1_1254_TPlot.pdf
TRINITY_DN14476_c0_g1:1257	si_s86	TRINITY_DN14476_c0_g1	1244	1266	1257	-32.90	-21.60	0.656534954407295	12	5-10,1262-1257;11-20,1254-1245	1-4,1266-1263[UP5];x-x,1256-1255[BULt];21-21,1244-1244[UP3]	.((((((((((..((((((....&....))))))--)))))))))).	CGCGAAGAAGACAAGAAAGCCAG&UUUCCUUUCU--UCUUCUUCGCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN14476_c0_g1_1257_TPlot.pdf
TRINITY_DN14476_c0_g1:1529	si_s670	TRINITY_DN14476_c0_g1	1518	1538	1529	-26.90	-18.00	0.669144981412639	5.5	2-5,1537-1534;7-20,1532-1519	1-1,1538-1538[UP5];6-6,1533-1533[SIL];21-21,1518-1518[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UUGUUUUUAUAAUCGCUUCGC&UCGAAUUGAUUAUAGAAACAU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s670_TRINITY_DN14476_c0_g1_1529_TPlot.pdf
TRINITY_DN14476_c0_g1:883	si_a840	TRINITY_DN14476_c0_g1	872	892	883	-28.20	-18.60	0.659574468085106	15.5	7-18,886-875	1-6,892-887[UP5];19-21,874-872[UP3]	...((((((((((((......&......))))))))))))...	AUCGUUGGCGACUUCGGCCUC&AAAAUAGAAGUUGCUAACUUG	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a840_TRINITY_DN14476_c0_g1_883_TPlot.pdf
TRINITY_DN14476_c0_g1:997	si_a61	TRINITY_DN14476_c0_g1	986	1007	997	-32.90	-21.70	0.659574468085106	9.5	2-4,1006-1004;5-15,1002-992	1-1,1007-1007[UP5];x-x,1003-1003[BULt];16-21,991-986[UP3]	......(((((((((((.(((.&.)))-)))))))))))......	UACGACGAGAGAAGCGACGUCU&CGAC-UCGCUUCUUUCAAAUUG	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN14476_c0_g1_997_TPlot.pdf
TRINITY_DN14476_c0_g1:998	si_a60	TRINITY_DN14476_c0_g1	987	1008	998	-32.20	-21.70	0.673913043478261	10.5	3-5,1006-1004;6-16,1002-992	1-2,1008-1007[UP5];x-x,1003-1003[BULt];17-21,991-987[UP3]	.....(((((((((((.(((..&..)))-))))))))))).....	ACGACGAGAGAAGCGACGUCUU&UCGAC-UCGCUUCUUUCAAAUU	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN14476_c0_g1_998_TPlot.pdf
TRINITY_DN14478_c0_g1:1482	si_a766	TRINITY_DN14478_c0_g1	1471	1491	1482	-30.50	-20.80	0.681967213114754	10.5	1-15,1491-1477	16-21,1476-1471[UP3]	......(((((((((((((((&)))))))))))))))......	UAAACUGUCGAUCGAGGACCC&GGGUUUUUGAUUGAUUCAACU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN14478_c0_g1_1482_TPlot.pdf
TRINITY_DN14481_c0_g1:1633	si_a566	TRINITY_DN14481_c0_g1	1622	1643	1633	-36.40	-23.90	0.656593406593407	8.5	1-4,1643-1640;5-7,1638-1636;9-15,1634-1628;18-19,1625-1624	x-x,1639-1639[BULt];8-8,1635-1635[SIL];16-17,1627-1626[SIL];20-21,1623-1622[UP3]	..((..(((((((.(((.((((&))))-))).)))))))..))..	UCGCUGACGAUUCUCGGCGGAG&CUCC-CCGUGAAUCGUAUGUUU	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN14481_c0_g1_1633_TPlot.pdf
TRINITY_DN14481_c0_g1:1634	si_a565	TRINITY_DN14481_c0_g1	1623	1644	1634	-37.40	-25.50	0.681818181818182	7.5	1-5,1644-1640;6-8,1638-1636;10-16,1634-1628;19-20,1625-1624	x-x,1639-1639[BULt];9-9,1635-1635[SIL];17-18,1627-1626[SIL];21-21,1623-1623[UP3]	.((..(((((((.(((.(((((&)))))-))).)))))))..)).	CGCUGACGAUUCUCGGCGGAGA&UCUCC-CCGUGAAUCGUAUGUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN14481_c0_g1_1634_TPlot.pdf
TRINITY_DN14481_c0_g1:1635	si_a564	TRINITY_DN14481_c0_g1	1624	1645	1635	-37.60	-25.50	0.678191489361702	7.5	2-6,1644-1640;7-9,1638-1636;11-17,1634-1628;20-21,1625-1624	1-1,1645-1645[UP5];x-x,1639-1639[BULt];10-10,1635-1635[SIL];18-19,1627-1626[SIL]	((..(((((((.(((.(((((.&.)))))-))).)))))))..))	GCUGACGAUUCUCGGCGGAGAA&AUCUCC-CCGUGAAUCGUAUGU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN14481_c0_g1_1635_TPlot.pdf
TRINITY_DN14481_c0_g1:394	si_a315	TRINITY_DN14481_c0_g1	383	403	394	-27.00	-18.00	0.666666666666667	11.5	1-5,403-399;7-14,397-390	6-6,398-398[SIL];15-21,389-383[UP3]	.......((((((((.(((((&))))).)))))))).......	UUGGACCCGUGGAUGUGUCCA&UGGAUUUAUCCAUGAUUUUUU	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN14481_c0_g1_394_TPlot.pdf
TRINITY_DN14481_c0_g1:798	si_a582	TRINITY_DN14481_c0_g1	787	807	798	-32.80	-21.38	0.651829268292683	10	2-10,806-798;14-19,794-789	1-1,807-807[UP5];11-13,797-795[SIL];20-21,788-787[UP3]	..((((((...(((((((((.&.)))))))))...))))))..	GGGUCCUUGCGGUUGCAAGCG&UGUUUGUAACAAGAAGGACAG	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN14481_c0_g1_798_TPlot.pdf
TRINITY_DN14482_c0_g1:1613	si_a498	TRINITY_DN14482_c0_g1	1602	1624	1613	-33.50	-22.36	0.667462686567164	14	3-6,1622-1619;10-21,1613-1602	1-2,1624-1623[UP5];7-9,1618-1614[AILt]	((((((((((((.....((((..&..))))--...))))))))))))	CAAGGAAGACGGCACUUACGAAA&UGUCGU--UUUUCGUCUUCCUUG	3	0.999999999989966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN14482_c0_g1_1613_TPlot.pdf
TRINITY_DN14482_c0_g1:1869	si_s89	TRINITY_DN14482_c0_g1	1858	1885	1869	-35.30	-23.50	0.6657223796034	20.5	1-2,1885-1884;5-7,1881-1879;8-20,1871-1859	3-4,1883-1882[SIL];x-x,1878-1872[BULt];21-21,1858-1858[UP3]	.(((((((((((((.......(((..((&))..)))-------))))))))))))).	AGAGGCGAAGGAGAGACCUGCAGAUUGG&CCUUUCU-------UCUUCUUCGCUUCG	2	0.999999994142159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN14482_c0_g1_1869_TPlot.pdf
TRINITY_DN14482_c0_g1:2003	si_s54	TRINITY_DN14482_c0_g1	1992	2012	2003	-32.50	-23.30	0.716923076923077	7.5	1-5,2012-2008;7-13,2006-2000;15-20,1998-1993	6-6,2007-2007[SIL];14-14,1999-1999[SIL];21-21,1992-1992[UP3]	.((((((.(((((((.(((((&))))).))))))).)))))).	UGAGUUGGUGACUUGCGGUCC&GGAUUUCAAGUUAGCAACUUC	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s54_TRINITY_DN14482_c0_g1_2003_TPlot.pdf
TRINITY_DN14482_c0_g1:2004	si_s53	TRINITY_DN14482_c0_g1	1993	2013	2004	-31.20	-23.40	0.75	7	2-6,2012-2008;8-14,2006-2000;16-21,1998-1993	1-1,2013-2013[UP5];7-7,2007-2007[SIL];15-15,1999-1999[SIL]	((((((.(((((((.(((((.&.))))).))))))).))))))	GAGUUGGUGACUUGCGGUCCG&UGGAUUUCAAGUUAGCAACUU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN14482_c0_g1_2004_TPlot.pdf
TRINITY_DN14482_c0_g1:2005	si_s52	TRINITY_DN14482_c0_g1	1994	2014	2005	-31.30	-22.70	0.725239616613419	7.5	2-7,2013-2008;9-15,2006-2000;17-21,1998-1994	1-1,2014-2014[UP5];8-8,2007-2007[SIL];16-16,1999-1999[SIL]	(((((.(((((((.((((((.&.)))))).))))))).)))))	AGUUGGUGACUUGCGGUCCGG&UUGGAUUUCAAGUUAGCAACU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN14482_c0_g1_2005_TPlot.pdf
TRINITY_DN14483_c0_g1:572	si_s386	TRINITY_DN14483_c0_g1	562	581	572	-39.20	-25.70	0.655612244897959	7	3-14,579-568;16-17,567-566;19-21,564-562	1-2,581-580[UP5];15-15,x-x[BULq];18-18,565-565[SIL]	(((.((-((((((((((((..&..)))))))))))).)).)))	CCUAGG-AUGUGAGGUGGAAU&UGUCCGCCUUACAUUCCAAGG	0	0.0401942479282396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s386_TRINITY_DN14483_c0_g1_572_TPlot.pdf
TRINITY_DN14487_c0_g1:1123	si_s899	TRINITY_DN14487_c0_g1	1111	1132	1123	-28.30	-18.60	0.657243816254417	10	1-11,1132-1122;16-19,1116-1113	12-15,1121-1117[AILt];20-21,1112-1111[UP3]	..((((.....(((((((((((&)))))))))))-....))))..	CUUUGACAGCAGAGGAGAAAGC&GCUUUCUCUUC-AAUUUCAAUU	4	0.999999999981419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN14487_c0_g1_1123_TPlot.pdf
TRINITY_DN14487_c0_g1:1878	si_s375	TRINITY_DN14487_c0_g1	1867	1891	1878	-44.10	-30.62	0.694331065759637	14.5	1-2,1891-1890;3-6,1888-1885;9-21,1879-1867	x-x,1889-1889[BULt];7-8,1884-1880[AILt]	(((((((((((((.....((((.((&))-))))---..)))))))))))))	GAGGCGGACGCGUAUGCUGCGACUC&GA-UCGC---UCGCGUGUCCGCCUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN14487_c0_g1_1878_TPlot.pdf
TRINITY_DN14487_c0_g1:381	si_s75	TRINITY_DN14487_c0_g1	367	390	381	-24.00	-16.20	0.675	9	1-4,390-387;6-13,385-378;14-21,374-367	5-5,386-386[SIL];x-x,377-375[BULt]	((((((((...((((((((.((((&)))).))))))))---))))))))	GGAAGGGACGUAAGAAGAACGGUA&UAUUUUUUUUCUU---UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN14487_c0_g1_381_TPlot.pdf
TRINITY_DN14487_c0_g1:433	si_s638	TRINITY_DN14487_c0_g1	422	456	433	-40.30	-27.60	0.684863523573201	33	1-9,456-448;10-19,433-424	x-x,447-434[BULt];20-21,423-422[UP3]	..((((((((((..............(((((((((&)))))))))--------------))))))))))..	CUUCGAGGGCGAGUGGAAGGACGGAAACGCUUGCG&CGUAGGCGU--------------UUGCCCUCGAUA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN14487_c0_g1_433_TPlot.pdf
TRINITY_DN14487_c0_g1:446	si_s308	TRINITY_DN14487_c0_g1	435	456	446	-32.80	-21.42	0.653048780487805	12.5	2-5,455-452;9-20,447-436	1-1,456-456[UP5];6-8,451-448[AILt];21-21,435-435[UP3]	.((((((((((((....((((.&.))))-...)))))))))))).	UGGAAGGACGGAAACGCUUGCG&UGCGA-AAAUUCUGUCCUUCUU	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN14487_c0_g1_446_TPlot.pdf
TRINITY_DN14487_c0_g1:449	si_s636	TRINITY_DN14487_c0_g1	424	458	449	-40.80	-27.70	0.678921568627451	32.5	2-11,457-448;12-21,433-424	1-1,458-458[UP5];x-x,447-434[BULt]	((((((((((..............((((((((((.&.))))))))))--------------))))))))))	UCGAGGGCGAGUGGAAGGACGGAAACGCUUGCGGU&UUCGUAGGCGU--------------UUGCCCUCGA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN14487_c0_g1_449_TPlot.pdf
TRINITY_DN14487_c0_g1:767	si_a677	TRINITY_DN14487_c0_g1	755	777	767	-35.40	-23.40	0.661016949152542	8	2-4,776-774;5-8,772-769;10-18,767-759;19-21,757-755	1-1,777-777[UP5];x-x,773-773[BULt];9-9,768-768[SIL];x-x,758-758[BULt]	(((.(((((((((.((((.(((.&.)))-)))).)))))))))-)))	CGACGGCCGCGUGUAUAGCGGAC&UUCC-UUAUUCACGCGGUU-UCG	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN14487_c0_g1_767_TPlot.pdf
TRINITY_DN14489_c0_g1:2458	si_a241	TRINITY_DN14489_c0_g1	2445	2468	2458	-36.70	-24.30	0.662125340599455	11	1-3,2468-2466;5-12,2463-2456;13-21,2453-2445	4-4,2465-2464[AILt];x-x,2455-2454[BULt]	(((((((((..((((((((..(((&)))-.))))))))--)))))))))	CGAUUGGGGUUGGUCGAGUGCGAU&AUC-AAUUCGAUC--CCCCGAUUG	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a241_TRINITY_DN14489_c0_g1_2458_TPlot.pdf
TRINITY_DN1448_c0_g1:452	si_s481	TRINITY_DN1448_c0_g1	441	461	452	-23.00	-15.20	0.660869565217391	9.5	3-16,459-446	1-2,461-460[UP5];17-21,445-441[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUAAAAAGUGAAUAUAGGACA&GAUCCUAUAUUUAUUUAAAUA	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN1448_c0_g1_452_TPlot.pdf
TRINITY_DN1448_c0_g1:78	si_s489	TRINITY_DN1448_c0_g1	67	87	78	-17.90	-14.10	0.787709497206704	9	5-20,83-68	1-4,87-84[UP5];21-21,67-67[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUUGUUUAUAUUUGAAUUUUU&AUUUAUUUAAAUAUAAACAAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN1448_c0_g1_78_TPlot.pdf
TRINITY_DN1448_c0_g1:80	si_s487	TRINITY_DN1448_c0_g1	69	89	80	-18.40	-13.10	0.71195652173913	12	7-21,83-69	1-6,89-84[UP5]	(((((((((((((((......&......)))))))))))))))	UGUUUAUAUUUGAAUUUUUAG&AUAUUUAUUUAAAUAUAAACA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN1448_c0_g1_80_TPlot.pdf
TRINITY_DN14492_c0_g1:375	si_a481	TRINITY_DN14492_c0_g1	364	384	375	-25.60	-17.20	0.671875	9	4-18,381-367;20-20,365-365	1-3,384-382[UP5];19-19,366-366[SIL];21-21,364-364[UP3]	.(.(((((((((((((((...&...))))))))))))))).).	AGGAUGUUCUGUAUAACACAA&UAUUGUUAUAUAGAAUAUGUC	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN14492_c0_g1_375_TPlot.pdf
TRINITY_DN14493_c1_g1:1579	si_s46	TRINITY_DN14493_c1_g1	1568	1589	1579	-25.00	-17.50	0.7	7.5	3-9,1587-1581;10-20,1579-1569	1-2,1589-1588[UP5];x-x,1580-1580[BULt];21-21,1568-1568[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	AAACUUGAGAUCAUAAUUAUAA&UAAUAAUUG-GAUUUCAAGUUA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN14493_c1_g1_1579_TPlot.pdf
TRINITY_DN14497_c0_g1:1542	si_s706	TRINITY_DN14497_c0_g1	1532	1551	1542	-29.40	-20.70	0.704081632653061	9	1-11,1551-1541;14-18,1539-1535	12-13,1540-1540[AILq];19-21,1534-1532[UP3]	...(((((.-(((((((((((&)))))))))))..)))))...	CCCCCCUGG-CACUGGUGAAU&AUUUAUUAGUGAACAGGGAAA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN14497_c0_g1_1542_TPlot.pdf
TRINITY_DN14497_c0_g1:1543	si_s705	TRINITY_DN14497_c0_g1	1533	1552	1543	-31.40	-22.00	0.700636942675159	7.5	1-12,1552-1541;15-19,1539-1535	13-14,1540-1540[AILq];20-21,1534-1533[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	CCCCCUGG-CACUGGUGAAUU&GAUUUAUUAGUGAACAGGGAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN14497_c0_g1_1543_TPlot.pdf
TRINITY_DN14497_c0_g1:1545	si_s703	TRINITY_DN14497_c0_g1	1535	1555	1545	-32.80	-23.40	0.713414634146341	7	1-4,1555-1552;5-14,1550-1541;17-21,1539-1535	x-x,1551-1551[BULt];15-16,1540-1540[AILq]	(((((.-((((((((((.((((&))))-))))))))))..)))))	CCCUGG-CACUGGUGAAUUCGA&UCGA-UUUAUUAGUGAACAGGG	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s703_TRINITY_DN14497_c0_g1_1545_TPlot.pdf
TRINITY_DN14497_c0_g1:1553	si_s696	TRINITY_DN14497_c0_g1	1541	1562	1553	-26.30	-17.60	0.669201520912548	14.5	7-11,1556-1552;12-21,1550-1541	1-6,1562-1557[UP5];x-x,1551-1551[BULt]	((((((((((.(((((......&......)))))-))))))))))	CACUGGUGAAUUCGACGUCGUU&UAAUUAGUCGA-UUUAUUAGUG	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN14497_c0_g1_1553_TPlot.pdf
TRINITY_DN14499_c0_g1:1098	si_a785	TRINITY_DN14499_c0_g1	1087	1107	1098	-25.90	-18.10	0.698841698841699	3.5	1-2,1107-1106;4-20,1104-1088	3-3,1105-1105[SIL];21-21,1087-1087[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	AAAGAUAGAAAAAUAGAAAAG&CUCUUCUAUUUUUCUAUUUUC	2	0.999998748533539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14499_c0_g1_1098_TPlot.pdf
TRINITY_DN14499_c0_g1:1101	si_a782	TRINITY_DN14499_c0_g1	1090	1111	1101	-26.40	-18.20	0.689393939393939	4.5	1-2,1111-1110;3-5,1108-1106;7-21,1104-1090	x-x,1109-1109[BULt];6-6,1105-1105[SIL]	(((((((((((((((.(((.((&))-))).)))))))))))))))	GAUAGAAAAAUAGAAAAGUCUG&CA-ACUCUUCUAUUUUUCUAUU	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN14499_c0_g1_1101_TPlot.pdf
TRINITY_DN14499_c0_g1:1893	si_s72	TRINITY_DN14499_c0_g1	1882	1911	1893	-24.10	-16.80	0.697095435684647	22	1-9,1911-1903;10-21,1893-1882	x-x,1902-1894[BULt]	((((((((((((.........(((((((((&)))))))))---------))))))))))))	AGGGAGAGGAAAAGGCUUAAAGAAAUGGAG&UUCUAUUUU---------UUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14499_c0_g1_1893_TPlot.pdf
TRINITY_DN14499_c0_g1:2105	si_a57	TRINITY_DN14499_c0_g1	2092	2113	2105	-36.60	-23.80	0.650273224043716	7.5	1-3,2113-2111;5-11,2110-2104;12-13,2102-2101;14-19,2099-2094	4-4,x-x[BULq];x-x,2103-2103[BULt];x-x,2100-2100[BULt];20-21,2093-2092[UP3]	..((((((.((.(((((((-(((&))).)))))))-))-))))))..	CAGAAAGGCAGUCGAGUCG-CUC&GAGUCGACUCG-CU-UCUUUCAA	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN14499_c0_g1_2105_TPlot.pdf
TRINITY_DN14499_c0_g1:653	si_s7	TRINITY_DN14499_c0_g1	642	662	653	-21.70	-15.70	0.723502304147465	12	6-19,657-644	1-5,662-658[UP5];20-21,643-642[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAUAGUAAUGAUAAGGCUCC&UAUUACUUAUUAUUACUAUAU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN14499_c0_g1_653_TPlot.pdf
TRINITY_DN144_c0_g2:1192	si_a459	TRINITY_DN144_c0_g2	1180	1201	1192	-23.20	-16.30	0.702586206896552	6.5	1-10,1201-1192;12-17,1190-1185;18-20,1183-1181	11-11,1191-1191[SIL];x-x,1184-1184[BULt];21-21,1180-1180[UP3]	.(((.((((((.((((((((((&)))))))))).))))))-))).	AUACAAUGUUACAUAUAGCAGC&GUUGUUAUAUAUAAUAU-GUAA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN144_c0_g2_1192_TPlot.pdf
TRINITY_DN144_c0_g2:1193	si_a458	TRINITY_DN144_c0_g2	1181	1202	1193	-23.80	-17.10	0.718487394957983	5.5	1-11,1202-1192;13-18,1190-1185;19-21,1183-1181	12-12,1191-1191[SIL];x-x,1184-1184[BULt]	(((.((((((.(((((((((((&))))))))))).))))))-)))	UACAAUGUUACAUAUAGCAGCA&UGUUGUUAUAUAUAAUAU-GUA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN144_c0_g2_1193_TPlot.pdf
TRINITY_DN144_c0_g2:1195	si_a456	TRINITY_DN144_c0_g2	1184	1204	1195	-22.80	-16.70	0.732456140350877	5.5	2-13,1203-1192;15-20,1190-1185	1-1,1204-1204[UP5];14-14,1191-1191[SIL];21-21,1184-1184[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	AAUGUUACAUAUAGCAGCAAA&AUUGUUGUUAUAUAUAAUAUG	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN144_c0_g2_1195_TPlot.pdf
TRINITY_DN144_c0_g2:1196	si_a455	TRINITY_DN144_c0_g2	1185	1205	1196	-21.10	-16.30	0.772511848341232	6.5	3-14,1203-1192;16-21,1190-1185	1-2,1205-1204[UP5];15-15,1191-1191[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AUGUUACAUAUAGCAGCAAAA&AAUUGUUGUUAUAUAUAAUAU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN144_c0_g2_1196_TPlot.pdf
TRINITY_DN144_c0_g2:1529	si_s77	TRINITY_DN144_c0_g2	1517	1538	1529	-25.50	-17.00	0.666666666666667	5.5	1-5,1538-1534;7-13,1532-1526;14-20,1524-1518	6-6,1533-1533[SIL];x-x,1525-1525[BULt];21-21,1517-1517[UP3]	.(((((((.(((((((.(((((&))))).)))))))-))))))).	AGAGAAAGCGAAAGAACAAGAA&UUUUUUUUCUUUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN144_c0_g2_1529_TPlot.pdf
TRINITY_DN144_c0_g2:1530	si_s76	TRINITY_DN144_c0_g2	1518	1539	1530	-23.60	-16.80	0.711864406779661	5.5	2-6,1538-1534;8-14,1532-1526;15-21,1524-1518	1-1,1539-1539[UP5];7-7,1533-1533[SIL];x-x,1525-1525[BULt]	(((((((.(((((((.(((((.&.))))).)))))))-)))))))	GAGAAAGCGAAAGAACAAGAAA&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN144_c0_g2_1530_TPlot.pdf
TRINITY_DN144_c0_g2:232	si_s73	TRINITY_DN144_c0_g2	221	242	232	-24.00	-15.70	0.654166666666667	13	1-6,242-237;11-20,231-222	7-10,236-232[AILt];21-21,221-221[UP3]	.((((((((((.....((((((&))))))-....)))))))))).	UAAGGAAGGAAUAUUUGAUAGG&UCUAUU-UUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN144_c0_g2_232_TPlot.pdf
TRINITY_DN144_c0_g2:233	si_s72	TRINITY_DN144_c0_g2	222	243	233	-24.10	-15.70	0.651452282157676	13.5	2-7,242-237;12-21,231-222	1-1,243-243[UP5];8-11,236-232[AILt]	((((((((((.....((((((.&.))))))-....))))))))))	AAGGAAGGAAUAUUUGAUAGGU&UUCUAUU-UUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN144_c0_g2_233_TPlot.pdf
TRINITY_DN144_c0_g2:751	si_s68	TRINITY_DN144_c0_g2	740	760	751	-23.10	-15.20	0.658008658008658	8	3-11,758-750;13-19,748-742	1-2,760-759[UP5];12-12,749-749[SIL];20-21,741-740[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	CUAGGGAAAUAAUAGAAGUGU&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN144_c0_g2_751_TPlot.pdf
TRINITY_DN144_c0_g2:787	si_s1	TRINITY_DN144_c0_g2	776	796	787	-18.70	-12.20	0.652406417112299	11	3-16,794-781	1-2,796-795[UP5];17-21,780-776[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUCUUAUAAGUGAUGUAAGUG&UUUUUAUAUUACUUAUUAUUA	2	0.999999978890261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN144_c0_g2_787_TPlot.pdf
TRINITY_DN144_c0_g2:794	si_s3	TRINITY_DN144_c0_g2	784	803	794	-21.20	-14.30	0.674528301886792	6	1-4,803-800;6-14,798-790;16-21,789-784	5-5,799-799[SIL];15-15,x-x[BULq]	((((((-(((((((((.((((&)))).))))))))).))))))	AGUGAU-GUAAGUGAUUUAGA&UUUAUAUUACUUAUUAUUACU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN144_c0_g2_794_TPlot.pdf
TRINITY_DN144_c0_g2:795	si_s2	TRINITY_DN144_c0_g2	785	804	795	-20.50	-13.70	0.668292682926829	6	1-5,804-800;7-15,798-790;17-21,789-785	6-6,799-799[SIL];16-16,x-x[BULq]	(((((-(((((((((.(((((&))))).))))))))).)))))	GUGAU-GUAAGUGAUUUAGAA&UUUUAUAUUACUUAUUAUUAC	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN144_c0_g2_795_TPlot.pdf
TRINITY_DN144_c0_g2:960	si_s73	TRINITY_DN144_c0_g2	945	969	960	-24.00	-15.90	0.6625	7.5	1-3,969-967;5-15,965-955;16-21,950-945	4-4,966-966[SIL];x-x,954-951[BULt]	((((((....(((((((((((.(((&))).)))))))))))----))))))	AGAGGAAGCUAAGAAAAAGAAAAGA&UCUAUUUUUUUUCUU----UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN144_c0_g2_960_TPlot.pdf
TRINITY_DN144_c0_g2:961	si_s72	TRINITY_DN144_c0_g2	946	970	961	-24.10	-16.00	0.663900414937759	7.5	1-4,970-967;6-16,965-955;17-21,950-946	5-5,966-966[SIL];x-x,954-951[BULt]	(((((....(((((((((((.((((&)))).)))))))))))----)))))	GAGGAAGCUAAGAAAAAGAAAAGAA&UUCUAUUUUUUUUCUU----UCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN144_c0_g2_961_TPlot.pdf
TRINITY_DN144_c0_g3:574	si_a23	TRINITY_DN144_c0_g3	563	583	574	-22.80	-15.50	0.679824561403509	7.5	1-4,583-580;6-19,578-565	5-5,579-579[SIL];20-21,564-563[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AUUUAGAACUAGAAGUUAGUG&UAUUUAUUUUUAGUUCUAAGA	2	0.996211839284778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN144_c0_g3_574_TPlot.pdf
TRINITY_DN144_c0_g3:575	si_a22	TRINITY_DN144_c0_g3	564	584	575	-23.50	-16.20	0.68936170212766	8	2-5,583-580;7-20,578-565	1-1,584-584[UP5];6-6,579-579[SIL];21-21,564-564[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UUUAGAACUAGAAGUUAGUGA&CUAUUUAUUUUUAGUUCUAAG	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN144_c0_g3_575_TPlot.pdf
TRINITY_DN144_c0_g3:576	si_a21	TRINITY_DN144_c0_g3	565	585	576	-24.30	-15.90	0.654320987654321	9	3-6,583-580;8-21,578-565	1-2,585-584[UP5];7-7,579-579[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UUAGAACUAGAAGUUAGUGAU&CCUAUUUAUUUUUAGUUCUAA	3	0.999999965662852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN144_c0_g3_576_TPlot.pdf
TRINITY_DN144_c1_g1:116	si_a407	TRINITY_DN144_c1_g1	105	125	116	-19.80	-13.50	0.681818181818182	9.5	1-15,125-111	16-21,110-105[UP3]	......(((((((((((((((&)))))))))))))))......	CAUCUUGUAUAAAUAGAGCAA&UUGUUUUGUUUAUAUUUAAAU	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN144_c1_g1_116_TPlot.pdf
TRINITY_DN144_c1_g1:117	si_a406	TRINITY_DN144_c1_g1	106	126	117	-19.80	-13.50	0.681818181818182	9.5	2-16,125-111	1-1,126-126[UP5];17-21,110-106[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUCUUGUAUAAAUAGAGCAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN144_c1_g1_117_TPlot.pdf
TRINITY_DN144_c1_g1:118	si_a405	TRINITY_DN144_c1_g1	107	127	118	-19.80	-13.50	0.681818181818182	10.5	3-17,125-111	1-2,127-126[UP5];18-21,110-107[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCUUGUAUAAAUAGAGCAAAA&AAUUGUUUUGUUUAUAUUUAA	2	0.999999999993365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN144_c1_g1_118_TPlot.pdf
TRINITY_DN144_c1_g1:611	si_s97	TRINITY_DN144_c1_g1	591	620	611	-36.30	-23.70	0.652892561983471	15	1-12,620-609;13-16,603-600;17-21,595-591	x-x,608-604[BULt];x-x,599-596[BULt]	(((((....((((.....((((((((((((&))))))))))))-----))))----)))))	UUCCACUUGAUCCUGAUAGAAGUGAAGAAG&CUUCUUCGCUUC-----GGAU----UGGAA	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN144_c1_g1_611_TPlot.pdf
TRINITY_DN144_c2_g1:1311	si_s773	TRINITY_DN144_c2_g1	1300	1320	1311	-23.10	-15.70	0.67965367965368	14.5	5-17,1316-1304	1-4,1320-1317[UP5];18-21,1303-1300[UP3]	....(((((((((((((....&....)))))))))))))....	AGACGUAGCAGUAGUGGGAGU&UUAAUUACUAUUGCUAUAAAA	4	0.999949203849064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN144_c2_g1_1311_TPlot.pdf
TRINITY_DN14501_c0_g2:1374	si_a767	TRINITY_DN14501_c0_g2	1360	1383	1374	-30.10	-19.70	0.654485049833887	11.5	1-11,1383-1373;12-15,1369-1366;17-21,1364-1360	x-x,1372-1370[BULt];16-16,1365-1365[SIL]	(((((.((((...(((((((((((&)))))))))))---)))).)))))	GAGUUCGAUCCCGAAUCGGAGGCC&GGUUUUUGAUU---GAUUCAACUC	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN14501_c0_g2_1374_TPlot.pdf
TRINITY_DN14501_c0_g2:1384	si_a757	TRINITY_DN14501_c0_g2	1373	1393	1384	-33.10	-22.50	0.6797583081571	8	3-9,1391-1385;11-21,1383-1373	1-2,1393-1392[UP5];10-10,1384-1384[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AAUCGGAGGCCAGAAGGAGUC&ACCUCCUUUGGGUUUUUGAUU	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN14501_c0_g2_1384_TPlot.pdf
TRINITY_DN14501_c0_g2:1420	si_a499	TRINITY_DN14501_c0_g2	1409	1431	1420	-35.20	-22.90	0.650568181818182	10.5	1-5,1431-1427;7-13,1423-1417;15-20,1415-1410	6-6,1426-1424[AILt];14-14,1416-1416[SIL];21-21,1409-1409[UP3]	.((((((.(((((((...(((((&)))))--.))))))).)))))).	ACGAGGACGACGAGAUGCACGGC&GUCGU--UUUUCGUCUUCCUUGG	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN14501_c0_g2_1420_TPlot.pdf
TRINITY_DN14501_c0_g2:1421	si_a498	TRINITY_DN14501_c0_g2	1410	1432	1421	-33.50	-22.40	0.66865671641791	10.5	2-6,1431-1427;8-14,1423-1417;16-21,1415-1410	1-1,1432-1432[UP5];7-7,1426-1424[AILt];15-15,1416-1416[SIL]	((((((.(((((((...(((((.&.)))))--.))))))).))))))	CGAGGACGACGAGAUGCACGGCC&UGUCGU--UUUUCGUCUUCCUUG	4	0.999999999992958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN14501_c0_g2_1421_TPlot.pdf
TRINITY_DN14501_c0_g2:1444	si_s305	TRINITY_DN14501_c0_g2	1433	1451	1444	-30.30	-20.08	0.662706270627063	12.5	2-7,1450-1445;12-21,1442-1433	1-1,1451-1451[UP5];8-11,1444-1443[AILq]	((((((((((..--((((((.&.))))))....))))))))))	AAGGGCAGAGGG--UGCAGUG&AAUUGCGAAAAUUCUGUCCUU	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN14501_c0_g2_1444_TPlot.pdf
TRINITY_DN14503_c0_g1:161	si_a879	TRINITY_DN14503_c0_g1	150	170	161	-27.40	-18.10	0.66058394160584	10	5-8,166-163;10-21,161-150	1-4,170-167[UP5];9-9,162-162[SIL]	((((((((((((.((((....&....)))).))))))))))))	ACUGUGUUGAUUUCAACAUUG&UUUAGUUGCAAUCAAUAUAGU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN14503_c0_g1_161_TPlot.pdf
TRINITY_DN14503_c1_g1:169	si_s9	TRINITY_DN14503_c1_g1	158	181	169	-22.90	-15.00	0.655021834061135	17	1-9,181-173;13-21,166-158	10-12,172-167[AILt]	(((((((((......(((((((((&)))))))))---...)))))))))	CAGUAUAGUUAGGGGGGUGGGUAG&UUACUUAUU---AUUACUAUAUUG	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN14503_c1_g1_169_TPlot.pdf
TRINITY_DN14512_c0_g1:282	si_s79	TRINITY_DN14512_c0_g1	271	291	282	-26.20	-20.20	0.770992366412214	14	6-19,286-273	1-5,291-287[UP5];20-21,272-271[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGAGGAGAGGGGAGAUGCGG&UUUUUUCUUUCCUUUCUUCUU	4	0.999999995494812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN14512_c0_g1_282_TPlot.pdf
TRINITY_DN1451_c0_g1:784	si_a407	TRINITY_DN1451_c0_g1	773	797	784	-19.80	-15.60	0.787878787878788	10.5	1-9,797-789;10-21,784-773	x-x,788-785[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	GUUUAAAUAUAACAGUGCAAAACGA&UUGUUUUGU----UUAUAUUUAAAU	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1451_c0_g1_784_TPlot.pdf
TRINITY_DN14522_c0_g1:1208	si_a311	TRINITY_DN14522_c0_g1	1197	1215	1208	-32.70	-21.30	0.651376146788991	10.5	1-7,1215-1209;11-18,1207-1200	8-10,1208-1208[AILq];19-21,1199-1197[UP3]	...((((((((.--(((((((&)))))))...))))))))...	AUGCGUGGAUGC--CCAAGCG&CGCUUGGAUUUAUCCAUGAUU	3	0.999761340034339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN14522_c0_g1_1208_TPlot.pdf
TRINITY_DN14527_c0_g1:292	si_a763	TRINITY_DN14527_c0_g1	281	304	292	-28.80	-19.70	0.684027777777778	10.5	1-9,304-296;10-17,292-285;20-20,282-282	x-x,295-293[BULt];18-19,284-283[SIL];21-21,281-281[UP3]	.(..((((((((...(((((((((&)))))))))---))))))))..).	AGUUUCGAUCAAAGUAAACCCAGA&UUUGGGUUU---UUGAUUGAUUCA	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN14527_c0_g1_292_TPlot.pdf
TRINITY_DN14529_c0_g1:17	si_s78	TRINITY_DN14529_c0_g1	2	26	17	-26.20	-17.30	0.66030534351145	8.5	1-12,26-15;13-15,11-9;16-21,7-2	x-x,14-12[BULt];x-x,8-8[BULt]	((((((.(((...((((((((((((&))))))))))))---)))-))))))	AGAAGAUGAGCAAGAAAGAAAAAGA&UUUUUUUCUUUC---CUU-UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN14529_c0_g1_17_TPlot.pdf
TRINITY_DN14529_c0_g1:36	si_a319	TRINITY_DN14529_c0_g1	25	47	36	-22.40	-14.90	0.665178571428572	8.5	1-3,47-45;5-9,43-39;10-21,36-25	4-4,44-44[SIL];x-x,38-37[BULt]	((((((((((((..(((((.(((&))).)))))--))))))))))))	GAUGAAAGAAUCCUAUGGAAGAA&UUUAUCCAU--GAUUUUUUUAUU	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN14529_c0_g1_36_TPlot.pdf
TRINITY_DN14529_c0_g1:52	si_s66	TRINITY_DN14529_c0_g1	41	60	52	-26.30	-21.70	0.82509505703422	4	2-9,59-52;11-21,51-41	1-1,60-60[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	GGAAGAAAAAU-GAAGUUGCA&AGCAACUUCUAUUUUUUUUCU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN14529_c0_g1_52_TPlot.pdf
TRINITY_DN14530_c0_g1:1196	si_a152	TRINITY_DN14530_c0_g1	1183	1205	1196	-29.20	-19.50	0.667808219178082	7.5	1-12,1205-1194;13-14,1192-1191;15-21,1189-1183	x-x,1193-1193[BULt];x-x,1190-1190[BULt]	(((((((.((.((((((((((((&))))))))))))-))-)))))))	UAGGUUGCACAUUUGGAACAGCA&UGUUGUUUUAAG-GU-CAAUCUA	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN14530_c0_g1_1196_TPlot.pdf
TRINITY_DN14530_c0_g1:1203	si_a145	TRINITY_DN14530_c0_g1	1191	1212	1203	-28.10	-20.80	0.740213523131673	7.5	3-19,1210-1194;20-21,1192-1191	1-2,1212-1211[UP5];x-x,1193-1193[BULt]	((.(((((((((((((((((..&..)))))))))))))))))-))	ACAUUUGGAACAGCAGCGAUGU&UAAUCGUUGUUGUUUUAAG-GU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN14530_c0_g1_1203_TPlot.pdf
TRINITY_DN14530_c0_g1:1206	si_a142	TRINITY_DN14530_c0_g1	1195	1215	1206	-23.50	-19.80	0.842553191489362	11.5	6-21,1210-1195	1-5,1215-1211[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUGGAACAGCAGCGAUGUACA&AAUUAAUCGUUGUUGUUUUAA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN14530_c0_g1_1206_TPlot.pdf
TRINITY_DN14530_c0_g1:136	si_a780	TRINITY_DN14530_c0_g1	125	146	136	-27.30	-18.50	0.677655677655678	8	1-4,146-143;5-8,141-138;11-21,135-125	x-x,142-142[BULt];9-10,137-136[SIL]	(((((((((((..((((.((((&))))-))))..)))))))))))	UAGAAGAAUGGCUGAGUCUGAG&UUCA-ACUCUUCUAUUUUUCUA	4	0.99998465846649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN14530_c0_g1_136_TPlot.pdf
TRINITY_DN14530_c0_g1:137	si_a779	TRINITY_DN14530_c0_g1	126	147	137	-27.00	-18.60	0.688888888888889	8	1-5,147-143;6-9,141-138;12-21,135-126	x-x,142-142[BULt];10-11,137-136[SIL]	((((((((((..((((.(((((&)))))-))))..))))))))))	AGAAGAAUGGCUGAGUCUGAGU&AUUCA-ACUCUUCUAUUUUUCU	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN14530_c0_g1_137_TPlot.pdf
TRINITY_DN14530_c0_g1:157	si_a555	TRINITY_DN14530_c0_g1	146	166	157	-33.70	-23.90	0.70919881305638	8.5	3-9,164-158;11-19,156-148	1-2,166-165[UP5];10-10,157-157[SIL];20-21,147-146[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	GUGCGGGGAGAAAAAGGAAGU&UAUUUCUUUAUCUCCCCGUGA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN14530_c0_g1_157_TPlot.pdf
TRINITY_DN14530_c0_g1:159	si_a553	TRINITY_DN14530_c0_g1	148	168	159	-33.70	-23.60	0.700296735905044	10.5	5-11,164-158;13-21,156-148	1-4,168-165[UP5];12-12,157-157[SIL]	(((((((((.(((((((....&....))))))).)))))))))	GCGGGGAGAAAAAGGAAGUCU&UCUAUUUCUUUAUCUCCCCGU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN14530_c0_g1_159_TPlot.pdf
TRINITY_DN14530_c0_g1:160	si_a552	TRINITY_DN14530_c0_g1	149	169	160	-33.10	-22.20	0.670694864048338	11	6-12,164-158;14-21,156-149	1-5,169-165[UP5];13-13,157-157[SIL]	((((((((.(((((((.....&.....))))))).))))))))	CGGGGAGAAAAAGGAAGUCUG&AUCUAUUUCUUUAUCUCCCCG	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN14530_c0_g1_160_TPlot.pdf
TRINITY_DN14530_c0_g1:162	si_s65	TRINITY_DN14530_c0_g1	151	172	162	-26.00	-18.40	0.707692307692308	7	1-5,172-168;6-11,166-161;13-21,159-151	x-x,167-167[BULt];12-12,160-160[SIL]	(((((((((.((((((.(((((&)))))-)))))).)))))))))	GGGAGAAAAAGGAAGUCUGCUG&UAGCA-ACUUCUAUUUUUUUUC	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN14530_c0_g1_162_TPlot.pdf
TRINITY_DN14530_c0_g1:675	si_s706	TRINITY_DN14530_c0_g1	664	684	675	-29.40	-19.50	0.663265306122449	6.5	1-9,684-676;11-19,674-666	10-10,675-675[SIL];20-21,665-664[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	CCUUCCUGUUCCUUGAUAAAU&AUUUAUUAGUGAACAGGGAAA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN14530_c0_g1_675_TPlot.pdf
TRINITY_DN14531_c0_g2:153	si_a757	TRINITY_DN14531_c0_g2	141	162	153	-33.10	-22.40	0.676737160120846	9	2-16,161-147;17-18,145-144	1-1,162-162[UP5];x-x,146-146[BULt];19-21,143-141[UP3]	...((.(((((((((((((((.&.)))))))))))))))-))...	ACCCGCAAGACUCGGAGGAGGA&ACCUCCUUUGGGUUUU-UGAUU	4	0.999999129531883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN14531_c0_g2_153_TPlot.pdf
TRINITY_DN14533_c0_g1:1382	si_a443	TRINITY_DN14533_c0_g1	1368	1391	1382	-30.00	-20.00	0.666666666666667	8	1-13,1391-1379;14-21,1375-1368	x-x,1378-1376[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	ACAGCGAUAAGUAUCUUGUGUUCA&UGGAUAUGAGAUA---AUUGUUGU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN14533_c0_g1_1382_TPlot.pdf
TRINITY_DN14533_c0_g1:405	si_a706	TRINITY_DN14533_c0_g1	393	414	405	-30.30	-19.70	0.65016501650165	4	1-5,414-410;7-15,408-400;16-21,398-393	6-6,409-409[SIL];x-x,399-399[BULt]	((((((.(((((((((.(((((&))))).)))))))))-))))))	UGGUUAUUUUUGGAAUUUACCA&UGGUACAUUCCAAAA-UAAUCG	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a706_TRINITY_DN14533_c0_g1_405_TPlot.pdf
TRINITY_DN14533_c0_g1:728	si_a592	TRINITY_DN14533_c0_g1	715	737	728	-32.80	-21.48	0.654878048780488	11	2-11,736-727;14-20,722-716	1-1,737-737[UP5];12-13,726-723[AILt];21-21,715-715[UP3]	.(((((((....((((((((((.&.))))))))))--..))))))).	AGCGGAAGCAAAUUGUCCUUCUG&AAGAAGGACAG--AAUUUUCGCA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN14533_c0_g1_728_TPlot.pdf
TRINITY_DN14539_c0_g2:1398	si_a323	TRINITY_DN14539_c0_g2	1389	1407	1398	-26.80	-18.10	0.675373134328358	5.5	1-13,1407-1395;16-21,1394-1389	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	AAGGGA--AAAAGGUUAUGGA&UCCAUGAUUUUUUUAUUCCUU	2	0.999648425564613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN14539_c0_g2_1398_TPlot.pdf
TRINITY_DN14539_c0_g2:3390	si_a409	TRINITY_DN14539_c0_g2	3380	3399	3390	-19.50	-13.00	0.666666666666667	6	1-11,3399-3389;13-18,3388-3383	12-12,x-x[BULq];19-21,3382-3380[UP3]	...((((((-(((((((((((&))))))))))).))))))...	ACUUUUAAA-GUAAACAAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999984145188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN14539_c0_g2_3390_TPlot.pdf
TRINITY_DN14539_c0_g5:1158	si_a837	TRINITY_DN14539_c0_g5	1147	1167	1158	-25.80	-16.90	0.655038759689922	12	6-18,1162-1150;21-21,1147-1147	1-5,1167-1163[UP5];19-20,1149-1148[SIL]	(..(((((((((((((.....&.....)))))))))))))..)	GGGAGCAACUUUUAUUAAUCA&AAAAAAAUAGAAGUUGCUAAC	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN14539_c0_g5_1158_TPlot.pdf
TRINITY_DN14539_c0_g5:2316	si_a409	TRINITY_DN14539_c0_g5	2306	2325	2316	-19.50	-13.00	0.666666666666667	6	1-11,2325-2315;13-18,2314-2309	12-12,x-x[BULq];19-21,2308-2306[UP3]	...((((((-(((((((((((&))))))))))).))))))...	ACUUUUAAA-GUAAACAAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999945639282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN14539_c0_g5_2316_TPlot.pdf
TRINITY_DN1453_c0_g1:193	si_s487	TRINITY_DN1453_c0_g1	182	202	193	-18.40	-13.40	0.728260869565218	9	1-11,202-192;14-21,189-182	12-13,191-190[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	UGUUUGUGAAUGAGUGAGUGU&AUAUUUAUUUAAAUAUAAACA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN1453_c0_g1_193_TPlot.pdf
TRINITY_DN1453_c0_g1:2640	si_s495	TRINITY_DN1453_c0_g1	2626	2649	2640	-19.80	-14.20	0.717171717171717	9	1-10,2649-2640;11-19,2636-2628	x-x,2639-2637[BULt];20-21,2627-2626[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	AUUUGUUUUGUUUAUUGUAUUUAA&UUAAAUAUAA---ACAAAACAAUU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN1453_c0_g1_2640_TPlot.pdf
TRINITY_DN1453_c0_g1:2642	si_s493	TRINITY_DN1453_c0_g1	2628	2651	2642	-19.80	-14.50	0.732323232323232	9	2-12,2650-2640;13-21,2636-2628	1-1,2651-2651[UP5];x-x,2639-2637[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	UUGUUUUGUUUAUUGUAUUUAAGC&AUUUAAAUAUAA---ACAAAACAA	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN1453_c0_g1_2642_TPlot.pdf
TRINITY_DN14543_c0_g1:107	si_a498	TRINITY_DN14543_c0_g1	96	125	107	-33.50	-21.90	0.653731343283582	22	1-9,125-117;10-20,107-97	x-x,116-108[BULt];21-21,96-96[UP3]	.(((((((((((.........(((((((((&)))))))))---------))))))))))).	AGGGGAAGACGAUAAAUUCUAAAAAUGGCA&UGUCGUUUU---------UCGUCUUCCUUG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN14543_c0_g1_107_TPlot.pdf
TRINITY_DN14543_c0_g1:110	si_a488	TRINITY_DN14543_c0_g1	99	119	110	-26.40	-18.10	0.685606060606061	9	4-9,116-111;11-21,109-99	1-3,119-117[UP5];10-10,110-110[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GGAAGACGAUAAAUUCUAAAA&AUAUAGAAUAUGUCGUUUUUC	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN14543_c0_g1_110_TPlot.pdf
TRINITY_DN14543_c0_g1:118	si_a496	TRINITY_DN14543_c0_g1	98	127	118	-32.40	-21.60	0.666666666666667	23.5	3-11,125-117;12-21,107-98	1-2,127-126[UP5];x-x,116-108[BULt]	((((((((((.........(((((((((..&..)))))))))---------))))))))))	GGGAAGACGAUAAAUUCUAAAAAUGGCAAG&UAUGUCGUUUU---------UCGUCUUCCU	3	0.999999999945049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN14543_c0_g1_118_TPlot.pdf
TRINITY_DN14544_c0_g1:1548	si_a351	TRINITY_DN14544_c0_g1	1537	1557	1548	-20.50	-14.80	0.721951219512195	11	5-19,1553-1539	1-4,1557-1554[UP5];20-21,1538-1537[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGCAAGGUAGAAUUGAUUUAU&AAAUAUUAAUUCUAUUUUGAU	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN14544_c0_g1_1548_TPlot.pdf
TRINITY_DN14545_c0_g1:1828	si_s642	TRINITY_DN14545_c0_g1	1817	1837	1828	-38.60	-26.26	0.680310880829016	7	2-13,1836-1825;18-20,1820-1818	1-1,1837-1837[UP5];14-17,1824-1821[SIL];21-21,1817-1817[UP3]	.(((....((((((((((((.&.))))))))))))....))).	UUUGGCGGGAGGGCGAACGCG&GGCGUUUGCCCUCGAUACAAU	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN14545_c0_g1_1828_TPlot.pdf
TRINITY_DN14545_c0_g1:1829	si_s641	TRINITY_DN14545_c0_g1	1818	1838	1829	-39.20	-26.16	0.66734693877551	8	3-14,1836-1825;19-21,1820-1818	1-2,1838-1837[UP5];15-18,1824-1821[SIL]	(((....((((((((((((..&..))))))))))))....)))	UUGGCGGGAGGGCGAACGCGA&AGGCGUUUGCCCUCGAUACAA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN14545_c0_g1_1829_TPlot.pdf
TRINITY_DN14545_c0_g1:1843	si_a374	TRINITY_DN14545_c0_g1	1832	1852	1843	-25.60	-19.30	0.75390625	6.5	1-4,1852-1849;6-17,1847-1836	5-5,1848-1848[SIL];18-21,1835-1832[UP3]	....((((((((((((.((((&)))).))))))))))))....	AACGCGAAGUCAUUUUGGAUC&GAUCAAAAAUGAUUUCGAAUU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN14545_c0_g1_1843_TPlot.pdf
TRINITY_DN14545_c0_g1:1844	si_a373	TRINITY_DN14545_c0_g1	1833	1853	1844	-28.00	-19.50	0.696428571428571	6.5	2-5,1852-1849;7-18,1847-1836	1-1,1853-1853[UP5];6-6,1848-1848[SIL];19-21,1835-1833[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	ACGCGAAGUCAUUUUGGAUCG&GGAUCAAAAAUGAUUUCGAAU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN14545_c0_g1_1844_TPlot.pdf
TRINITY_DN14545_c0_g1:1845	si_a372	TRINITY_DN14545_c0_g1	1834	1854	1845	-29.40	-19.50	0.663265306122449	7.5	3-6,1852-1849;8-19,1847-1836	1-2,1854-1853[UP5];7-7,1848-1848[SIL];20-21,1835-1834[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	CGCGAAGUCAUUUUGGAUCGC&CGGAUCAAAAAUGAUUUCGAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN14545_c0_g1_1845_TPlot.pdf
TRINITY_DN14545_c0_g1:1847	si_a370	TRINITY_DN14545_c0_g1	1836	1856	1847	-29.50	-19.30	0.654237288135593	9.5	5-8,1852-1849;10-21,1847-1836	1-4,1856-1853[UP5];9-9,1848-1848[SIL]	((((((((((((.((((....&....)))).))))))))))))	CGAAGUCAUUUUGGAUCGCAU&AUCGGAUCAAAAAUGAUUUCG	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN14545_c0_g1_1847_TPlot.pdf
TRINITY_DN14545_c0_g1:2434	si_a228	TRINITY_DN14545_c0_g1	2418	2443	2434	-27.10	-18.70	0.690036900369004	9	1-4,2443-2440;6-13,2438-2431;14-21,2425-2418	5-5,2439-2439[SIL];x-x,2430-2426[BULt]	((((((((.....((((((((.((((&)))).))))))))-----))))))))	GAAUUGAUUUGCAUGUAGGAAGAUGA&UCAUGUUUCUAUA-----AUCAAUUC	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN14545_c0_g1_2434_TPlot.pdf
TRINITY_DN14545_c0_g1:2888	si_s684	TRINITY_DN14545_c0_g1	2878	2897	2888	-28.30	-19.60	0.692579505300353	10.5	5-12,2893-2886;14-21,2885-2878	1-4,2897-2894[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	GACUGAUU-GACUCGUGGACA&GAAACAUGAGUUUAAUUAGUC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN14545_c0_g1_2888_TPlot.pdf
TRINITY_DN14548_c0_g1:2468	si_a70	TRINITY_DN14548_c0_g1	2457	2477	2468	-23.90	-15.80	0.661087866108787	8	1-8,2477-2470;10-11,2468-2467;13-19,2465-2459	9-9,2469-2469[SIL];12-12,2466-2466[SIL];20-21,2458-2457[UP3]	..(((((((.((.((((((((&)))))))).)).)))))))..	CUUGGAAGAGGAGUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.99999999999534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN14548_c0_g1_2468_TPlot.pdf
TRINITY_DN14548_c0_g1:2524	si_a785	TRINITY_DN14548_c0_g1	2509	2533	2524	-25.90	-16.90	0.652509652509653	9	2-14,2532-2520;15-21,2515-2509	1-1,2533-2533[UP5];x-x,2519-2516[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	GGAGAUAUUUUGAAAGAUAGGAGGC&CUCUUCUAUUUUUC----UAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14548_c0_g1_2524_TPlot.pdf
TRINITY_DN14548_c0_g1:2554	si_s811	TRINITY_DN14548_c0_g1	2543	2564	2554	-26.40	-17.30	0.65530303030303	11	1-6,2564-2559;8-17,2556-2547	7-7,2558-2557[AILt];18-21,2546-2543[UP3]	....((((((((((..((((((&))))))-.))))))))))....	AUACUAGGGAAAGGGAGACGGA&UUCGUU-ACCUUUUCUUAAUAA	4	0.999999978812603	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN14548_c0_g1_2554_TPlot.pdf
TRINITY_DN14555_c5_g1:52	si_a460	TRINITY_DN14555_c5_g1	41	61	52	-21.60	-14.10	0.652777777777778	6	1-12,61-50;15-18,47-44	13-14,49-48[SIL];19-21,43-41[UP3]	...((((..((((((((((((&))))))))))))..))))...	GGGACAUCAUGUAUAUAACAA&UUGUUAUAUAUAAUAUGUAAU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN14555_c5_g1_52_TPlot.pdf
TRINITY_DN14557_c0_g1:903	si_a513	TRINITY_DN14557_c0_g1	891	912	903	-39.50	-27.40	0.693670886075949	8.5	2-12,911-901;14-19,898-893	1-1,912-912[UP5];13-13,900-899[AILt];20-21,892-891[UP3]	..((((((..(((((((((((.&.)))))))))))-.))))))..	AACCGUCUGAACGUUCCGAGGG&UCCUUGGAAUGU-AAGGCGGAC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN14557_c0_g1_903_TPlot.pdf
TRINITY_DN1455_c0_g2:296	si_s64	TRINITY_DN1455_c0_g2	285	305	296	-24.10	-15.80	0.655601659751037	11	2-12,304-294	1-1,305-305[UP5];13-21,293-285[UP3]	.........(((((((((((.&.))))))))))).........	AUUACUGAAAGAGGUUGCUAC&UUAGCAACUUCUAUUUUUUUU	2	0.999999983946623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1455_c0_g2_296_TPlot.pdf
TRINITY_DN14560_c1_g1:641	si_s48	TRINITY_DN14560_c1_g1	630	650	641	-28.80	-19.80	0.6875	6.5	1-8,650-643;10-21,641-630	9-9,642-642[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	GUUGGCUUGGAACUCAGUUAU&AUAAUUGGAUUUCAAGUUAGC	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN14560_c1_g1_641_TPlot.pdf
TRINITY_DN14567_c0_g1:419	si_s158	TRINITY_DN14567_c0_g1	408	428	419	-44.90	-30.00	0.66815144766147	11.5	1-5,428-424;8-8,421-421;10-10,419-419;13-21,416-408	6-7,423-422[SIL];9-9,420-420[SIL];11-12,418-417[SIL]	(((((((((..(.(..(((((&)))))..).)..)))))))))	UGCCCCUGGAAGCGUUCCUCC&GGAGGUUCAUGGCCAGGGGUA	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN14567_c0_g1_419_TPlot.pdf
TRINITY_DN14567_c1_g1:1260	si_a142	TRINITY_DN14567_c1_g1	1249	1269	1260	-23.50	-16.00	0.680851063829787	12	4-17,1266-1253	1-3,1269-1267[UP5];18-21,1252-1249[UP3]	....((((((((((((((...&...))))))))))))))....	CAAUGACGACGAUGAUUAGAU&AAUUAAUCGUUGUUGUUUUAA	3	0.999999998986108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN14567_c1_g1_1260_TPlot.pdf
TRINITY_DN14567_c1_g1:1261	si_a141	TRINITY_DN14567_c1_g1	1250	1270	1261	-23.80	-16.00	0.672268907563025	13	5-18,1266-1253	1-4,1270-1267[UP5];19-21,1252-1250[UP3]	...((((((((((((((....&....))))))))))))))...	AAUGACGACGAUGAUUAGAUU&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999473538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN14567_c1_g1_1261_TPlot.pdf
TRINITY_DN1456_c0_g1:136	si_s173	TRINITY_DN1456_c0_g1	125	145	136	-39.70	-27.50	0.692695214105793	7	1-6,145-140;8-14,138-132;16-18,130-128	7-7,139-139[SIL];15-15,131-131[SIL];19-21,127-125[UP3]	...(((.(((((((.((((((&)))))).))))))).)))...	GCUCUCCGGCAUCUAUGCCCC&GGGGUAAAGAUGCCCGAGUAA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN1456_c0_g1_136_TPlot.pdf
TRINITY_DN1456_c0_g1:137	si_s172	TRINITY_DN1456_c0_g1	126	146	137	-40.30	-28.60	0.709677419354839	6	1-7,146-140;9-15,138-132;17-19,130-128	8-8,139-139[SIL];16-16,131-131[SIL];20-21,127-126[UP3]	..(((.(((((((.(((((((&))))))).))))))).)))..	CUCUCCGGCAUCUAUGCCCCU&AGGGGUAAAGAUGCCCGAGUA	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s172_TRINITY_DN1456_c0_g1_137_TPlot.pdf
TRINITY_DN1456_c0_g1:138	si_s171	TRINITY_DN1456_c0_g1	127	147	138	-41.60	-28.70	0.689903846153846	6	2-8,146-140;10-16,138-132;18-20,130-128	1-1,147-147[UP5];9-9,139-139[SIL];17-17,131-131[SIL];21-21,127-127[UP3]	.(((.(((((((.(((((((.&.))))))).))))))).))).	UCUCCGGCAUCUAUGCCCCUC&CAGGGGUAAAGAUGCCCGAGU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s171_TRINITY_DN1456_c0_g1_138_TPlot.pdf
TRINITY_DN1456_c0_g1:139	si_s170	TRINITY_DN1456_c0_g1	128	148	139	-43.20	-28.50	0.659722222222222	7	3-9,146-140;11-17,138-132;19-21,130-128	1-2,148-147[UP5];10-10,139-139[SIL];18-18,131-131[SIL]	(((.(((((((.(((((((..&..))))))).))))))).)))	CUCCGGCAUCUAUGCCCCUCG&CCAGGGGUAAAGAUGCCCGAG	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s170_TRINITY_DN1456_c0_g1_139_TPlot.pdf
TRINITY_DN1456_c0_g1:788	si_s79	TRINITY_DN1456_c0_g1	777	800	788	-26.20	-17.84	0.680916030534351	12	2-9,799-792;11-21,787-777	1-1,800-800[UP5];10-10,791-788[AILt]	(((((((((((....((((((((.&.))))))))---.)))))))))))	AAGGAGAAGGGCAUCAAGAAGAGC&UUUUUUCUU---UCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1456_c0_g1_788_TPlot.pdf
TRINITY_DN1456_c0_g1:812	si_a145	TRINITY_DN1456_c0_g1	801	821	812	-28.10	-18.30	0.651245551601424	12	6-20,816-802	1-5,821-817[UP5];21-21,801-801[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUCUUGGAGCAACAACAGGAG&UAAUCGUUGUUGUUUUAAGGU	4	0.999999839810467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN1456_c0_g1_812_TPlot.pdf
TRINITY_DN1456_c0_g1:814	si_a143	TRINITY_DN1456_c0_g1	803	823	814	-25.10	-17.20	0.685258964143426	14.5	8-21,816-803	1-7,823-817[UP5]	((((((((((((((.......&.......))))))))))))))	CUUGGAGCAACAACAGGAGGC&AUUAAUCGUUGUUGUUUUAAG	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN1456_c0_g1_814_TPlot.pdf
TRINITY_DN14570_c0_g1:676	si_a24	TRINITY_DN14570_c0_g1	665	685	676	-24.20	-16.10	0.665289256198347	8	3-16,683-670;19-21,667-665	1-2,685-684[UP5];17-18,669-668[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	GUUCCGGAACUAAAGAUGAUU&AUUUAUUUUUAGUUCUAAGAC	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN14570_c0_g1_676_TPlot.pdf
TRINITY_DN14572_c0_g2:1765	si_a72	TRINITY_DN14572_c0_g2	1754	1774	1765	-21.90	-18.00	0.821917808219178	5	1-5,1774-1770;7-21,1768-1754	6-6,1769-1769[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	AUGGUGAAAAACGAUCUGGAA&UUUCAAAUUGUUUUUCAUUAU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN14572_c0_g2_1765_TPlot.pdf
TRINITY_DN14572_c0_g2:808	si_a410	TRINITY_DN14572_c0_g2	797	818	808	-17.80	-12.20	0.685393258426966	8	3-9,816-810;10-21,808-797	1-2,818-817[UP5];x-x,809-809[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	UUUAUUUAAAUGUUAAACGGCU&UUUUGUUUA-UAUUUAAAUAAA	2	0.999995866409828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN14572_c0_g2_808_TPlot.pdf
TRINITY_DN14577_c0_g1:967	si_a80	TRINITY_DN14577_c0_g1	956	976	967	-22.10	-14.40	0.65158371040724	7	1-16,976-961	17-21,960-956[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUAAUUAAUAAUGAGAAAUA&UGUUUUUCAUUAUUAAGAAAA	2	0.999984147449623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN14577_c0_g1_967_TPlot.pdf
TRINITY_DN1457_c0_g1:326	si_s30	TRINITY_DN1457_c0_g1	315	335	326	-24.80	-17.00	0.685483870967742	6.5	1-12,335-324;14-17,322-319	13-13,323-323[SIL];18-21,318-315[UP3]	....((((.((((((((((((&)))))))))))).))))....	CGGCAGAGUUUUGGUUGCAAU&AUUGCAACUAAAUCUUUAAUA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN1457_c0_g1_326_TPlot.pdf
TRINITY_DN1457_c0_g1:328	si_s28	TRINITY_DN1457_c0_g1	317	337	328	-27.00	-18.30	0.677777777777778	6.5	2-14,336-324;16-19,322-319	1-1,337-337[UP5];15-15,323-323[SIL];20-21,318-317[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	GCAGAGUUUUGGUUGCAAUUU&UGAUUGCAACUAAAUCUUUAA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN1457_c0_g1_328_TPlot.pdf
TRINITY_DN1457_c0_g1:533	si_a182	TRINITY_DN1457_c0_g1	522	541	533	-31.80	-20.70	0.650943396226415	6	1-3,541-539;5-8,537-534;10-19,533-524	4-4,538-538[SIL];9-9,x-x[BULq];20-21,523-522[UP3]	..((((((((((-((((.(((&))).)))).))))))))))..	UGAGGGAAAGAU-UUAUGUAG&CUAGAUAAUAUCUUUCCCUGU	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN1457_c0_g1_533_TPlot.pdf
TRINITY_DN1457_c0_g1:534	si_a181	TRINITY_DN1457_c0_g1	523	542	534	-32.00	-22.30	0.696875	5	1-4,542-539;6-9,537-534;11-20,533-524	5-5,538-538[SIL];10-10,x-x[BULq];21-21,523-523[UP3]	.((((((((((-((((.((((&)))).)))).)))))))))).	GAGGGAAAGAU-UUAUGUAGA&UCUAGAUAAUAUCUUUCCCUG	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN1457_c0_g1_534_TPlot.pdf
TRINITY_DN1457_c0_g1:535	si_s72	TRINITY_DN1457_c0_g1	524	543	535	-24.10	-15.88	0.658921161825726	13.5	1-6,543-538;13-21,532-524	7-12,537-533[AILq]	(((((((((.....-((((((&))))))......)))))))))	AGGGAAAGAUUUAU-GUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1457_c0_g1_535_TPlot.pdf
TRINITY_DN1457_c0_g1:538	si_s68	TRINITY_DN1457_c0_g1	524	547	538	-23.10	-17.82	0.771428571428571	12.5	1-10,547-538;13-21,532-524	11-12,537-533[AILt]	(((((((((.....((((((((((&))))))))))---..)))))))))	AGGGAAAGAUUUAUGUAGAAGUUG&CAACUUCUAU---UUUUUUUCUUU	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1457_c0_g1_538_TPlot.pdf
TRINITY_DN1457_c0_g1:539	si_s67	TRINITY_DN1457_c0_g1	523	548	539	-25.60	-18.00	0.703125	14	2-11,547-538;12-21,532-523	1-1,548-548[UP5];x-x,537-533[BULt]	((((((((((.....((((((((((.&.))))))))))-----))))))))))	GAGGGAAAGAUUUAUGUAGAAGUUGA&GCAACUUCUAU-----UUUUUUUCUU	3	0.999991880123019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1457_c0_g1_539_TPlot.pdf
TRINITY_DN14580_c0_g1:336	si_a406	TRINITY_DN14580_c0_g1	325	345	336	-19.80	-13.90	0.702020202020202	6	2-17,344-329	1-1,345-345[UP5];18-21,328-325[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUGCAAUAUAAAUAAAACAAC&AUUGUUUUGUUUAUAUUUAAA	2	0.99999965272465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN14580_c0_g1_336_TPlot.pdf
TRINITY_DN1458_c1_g1:315	si_a418	TRINITY_DN1458_c1_g1	303	324	315	-21.20	-13.80	0.650943396226415	4	2-12,323-313;14-17,311-308;18-21,306-303	1-1,324-324[UP5];13-13,312-312[SIL];x-x,307-307[BULt]	((((.((((.(((((((((((.&.))))))))))).))))-))))	AUCCUUAUAAUUAUUUGAAUAA&AUAUUUAAAUAAAUAUA-GGAU	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN1458_c1_g1_315_TPlot.pdf
TRINITY_DN14594_c0_g1:142	si_s802	TRINITY_DN14594_c0_g1	128	151	142	-26.40	-18.70	0.708333333333333	13	3-10,149-142;11-20,138-129	1-2,151-150[UP5];x-x,141-139[BULt];21-21,128-128[UP3]	.((((((((((...((((((((..&..))))))))---)))))))))).	UAGGGUGACGAUCUAGAUGAAGGG&UAUUUUAUCU---UCGUUACCUUU	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN14594_c0_g1_142_TPlot.pdf
TRINITY_DN14594_c0_g1:1675	si_s90	TRINITY_DN14594_c0_g1	1664	1684	1675	-35.30	-25.40	0.719546742209632	7.5	1-2,1684-1683;5-14,1680-1671;16-21,1669-1664	3-4,1682-1681[SIL];15-15,1670-1670[SIL]	((((((.((((((((((..((&))..)))))))))).))))))	CCGAGGAGAGGGAGAAGCUAG&CUUUCUUCUUCUUCGCUUCGG	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN14594_c0_g1_1675_TPlot.pdf
TRINITY_DN14594_c0_g1:210	si_s73	TRINITY_DN14594_c0_g1	197	219	210	-24.00	-15.96	0.665	8	1-13,219-207;17-21,201-197	14-16,206-202[AILt]	(((((.....(((((((((((((&)))))))))))))--...)))))	AAAGGUCCCUGGAAAAAGAUGGA&UCUAUUUUUUUUC--UUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN14594_c0_g1_210_TPlot.pdf
TRINITY_DN14594_c0_g1:353	si_s90	TRINITY_DN14594_c0_g1	342	362	353	-35.30	-23.50	0.6657223796034	8.5	1-2,362-361;5-18,358-345;20-21,343-342	3-4,360-359[SIL];19-19,344-344[SIL]	((.((((((((((((((..((&))..)))))))))))))).))	CCAAAGCGGAGGAGAGGCUGG&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN14594_c0_g1_353_TPlot.pdf
TRINITY_DN14597_c0_g1:272	si_a887	TRINITY_DN14597_c0_g1	261	280	272	-22.90	-15.30	0.668122270742358	5	1-3,280-278;5-19,277-263	4-4,x-x[BULq];20-21,262-261[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	UAAUUAUUAUUAUAUUG-UUG&CAAUCAAUAUAGUAAUAAUAA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN14597_c0_g1_272_TPlot.pdf
TRINITY_DN1459_c1_g1:1787	si_s74	TRINITY_DN1459_c1_g1	1776	1796	1787	-25.00	-17.10	0.684	10	5-18,1792-1779;20-21,1777-1776	1-4,1796-1793[UP5];19-19,1778-1778[SIL]	((.((((((((((((((....&....)))))))))))))).))	GAUAGGAAAGGAGAAAACGGA&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1459_c1_g1_1787_TPlot.pdf
TRINITY_DN1459_c1_g1:1789	si_s72	TRINITY_DN1459_c1_g1	1778	1797	1789	-24.10	-16.00	0.663900414937759	8.5	2-4,1796-1794;7-20,1792-1779	1-1,1797-1797[UP5];5-6,1793-1793[AILq];21-21,1778-1778[UP3]	.((((((((((((((.-(((.&.)))..)))))))))))))).	UAGGAAAGGAGAAAAC-GGAC&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1459_c1_g1_1789_TPlot.pdf
TRINITY_DN1459_c1_g1:1798	si_s63	TRINITY_DN1459_c1_g1	1786	1807	1798	-25.80	-17.10	0.662790697674419	6.5	2-10,1806-1798;11-13,1796-1794;15-21,1792-1786	1-1,1807-1807[UP5];x-x,1797-1797[BULt];14-14,1793-1793[SIL]	(((((((.(((.(((((((((.&.)))))))))-))).)))))))	GAGAAAACGGACAGUUGCUGAA&GUUAGCAACU-UCUAUUUUUUU	2	0.999925808258036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN1459_c1_g1_1798_TPlot.pdf
TRINITY_DN1459_c1_g1:2604	si_a560	TRINITY_DN1459_c1_g1	2593	2613	2604	-36.60	-24.10	0.658469945355191	8	2-7,2612-2607;9-18,2605-2596	1-1,2613-2613[UP5];8-8,2606-2606[SIL];19-21,2595-2593[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	CUCGUUCGCGGGGCGAUGAAA&CUUUAUCUCCCCGUGAAUCGU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN1459_c1_g1_2604_TPlot.pdf
TRINITY_DN1459_c1_g1:2608	si_a556	TRINITY_DN1459_c1_g1	2597	2617	2608	-33.40	-22.70	0.679640718562874	12.5	6-11,2612-2607;13-21,2605-2597	1-5,2617-2613[UP5];12-12,2606-2606[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	UUCGCGGGGCGAUGAAACGGU&AUUUCUUUAUCUCCCCGUGAA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN1459_c1_g1_2608_TPlot.pdf
TRINITY_DN14606_c0_g1:1382	si_a25	TRINITY_DN14606_c0_g1	1371	1391	1382	-26.50	-17.70	0.667924528301887	14.5	6-15,1386-1377;17-21,1375-1371	1-5,1391-1387[UP5];16-16,1376-1376[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GGUCUAGGAGCUAGGGUGCAA&UUUAUUUUUAGUUCUAAGACC	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN14606_c0_g1_1382_TPlot.pdf
TRINITY_DN14611_c0_g1:871	si_a636	TRINITY_DN14611_c0_g1	860	880	871	-26.30	-20.20	0.768060836501901	7.5	2-17,879-864	1-1,880-880[UP5];18-21,863-860[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGAGACUCGAAGAAAUCGAUC&UGUCGAUUUUUUUGAGUAAUA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN14611_c0_g1_871_TPlot.pdf
TRINITY_DN14616_c0_g1:781	si_a460	TRINITY_DN14616_c0_g1	770	790	781	-21.60	-14.80	0.685185185185185	9	2-17,789-774	1-1,790-790[UP5];18-21,773-770[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAUCGUGUUAUGUAUGAUAC&UUGUUAUAUAUAAUAUGUAAU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN14616_c0_g1_781_TPlot.pdf
TRINITY_DN1461_c0_g1:939	si_s83	TRINITY_DN1461_c0_g1	920	949	939	-30.90	-20.50	0.663430420711974	19.5	2-7,948-943;8-10,941-939;11-21,930-920	1-1,949-949[UP5];x-x,942-942[BULt];x-x,938-931[BULt]	(((((((((((........(((.((((((.&.))))))-)))--------)))))))))))	GAGGAAGAAGAUCAAUUAAAAGUGAAAGAU&UUCUUUC-CUU--------UCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1461_c0_g1_939_TPlot.pdf
TRINITY_DN14623_c0_g2:178	si_s549	TRINITY_DN14623_c0_g2	167	187	178	-20.50	-17.30	0.84390243902439	6	3-19,185-169	1-2,187-186[UP5];20-21,168-167[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUAUAUUGGUUCUAUUUUGGA&AUCAAAAUAGAAUUAAUAUUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN14623_c0_g2_178_TPlot.pdf
TRINITY_DN14628_c0_g1:3260	si_s572	TRINITY_DN14628_c0_g1	3249	3269	3260	-30.10	-20.00	0.664451827242525	10	1-13,3269-3257	14-21,3256-3249[UP3]	........(((((((((((((&)))))))))))))........	CCAGUUGGUGUUUCUUGUCCC&GGGACAAGGAAUAAAAAAAUC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s572_TRINITY_DN14628_c0_g1_3260_TPlot.pdf
TRINITY_DN14628_c0_g1:3316	si_a16	TRINITY_DN14628_c0_g1	3305	3325	3316	-26.30	-18.20	0.692015209125475	13	6-21,3320-3305	1-5,3325-3321[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUAGAGGUAAGUGGGACAGC&GAAAGCCUAUUUAUUUUUAGU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN14628_c0_g1_3316_TPlot.pdf
TRINITY_DN14628_c1_g1:140	si_s58	TRINITY_DN14628_c1_g1	130	149	140	-29.30	-22.50	0.767918088737201	6.5	2-12,148-138;14-20,137-131	1-1,149-149[UP5];13-13,x-x[BULq];21-21,130-130[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	UGUAGGGG-UGCUGGCUUGAC&UUCAAGUUAGCAACUUCUAUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN14628_c1_g1_140_TPlot.pdf
TRINITY_DN14628_c1_g1:267	si_a400	TRINITY_DN14628_c1_g1	256	278	267	-22.80	-17.00	0.745614035087719	7.5	1-7,278-272;8-21,269-256	x-x,271-270[BULt]	((((((((((((((..(((((((&)))))))--))))))))))))))	UGUAAACAGAAUAAGUUUCUGUG&UAUAGAA--UUGUUUUGUUUAUA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN14628_c1_g1_267_TPlot.pdf
TRINITY_DN14650_c0_g1:478	si_a462	TRINITY_DN14650_c0_g1	467	487	478	-21.20	-16.30	0.768867924528302	6.5	1-16,487-472	17-21,471-467[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAGAAUAUAUUAUAUAUGAC&GUUAUAUAUAAUAUGUAAUUA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN14650_c0_g1_478_TPlot.pdf
TRINITY_DN14650_c0_g2:734	si_a18	TRINITY_DN14650_c0_g2	723	744	734	-26.30	-19.02	0.72319391634981	11.5	2-8,743-737;12-21,732-723	1-1,744-744[UP5];9-11,736-733[AILt]	((((((((((....(((((((.&.)))))))-...))))))))))	GGGCUGAAAAGUUCGUAGGCUG&AAGCCUAU-UUAUUUUUAGUUC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN14650_c0_g2_734_TPlot.pdf
TRINITY_DN14650_c0_g3:251	si_a463	TRINITY_DN14650_c0_g3	240	260	251	-19.70	-13.00	0.65989847715736	7.5	1-15,260-246	16-21,245-240[UP3]	......(((((((((((((((&)))))))))))))))......	AAAAGAAUAUAUUAUAUAUGA&UUAUAUAUAAUAUGUAAUUAU	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN14650_c0_g3_251_TPlot.pdf
TRINITY_DN14664_c0_g1:1496	si_a891	TRINITY_DN14664_c0_g1	1485	1508	1496	-22.90	-15.50	0.676855895196507	8.5	1-7,1508-1502;8-21,1498-1485	x-x,1501-1499[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	UUAUUUAUUGUUAUAUAUAUAUUG&CAAUAUA---GUAAUAAUAAGUAA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN14664_c0_g1_1496_TPlot.pdf
TRINITY_DN14664_c0_g1:1540	si_a462	TRINITY_DN14664_c0_g1	1529	1549	1540	-21.20	-14.50	0.683962264150943	6	1-5,1549-1545;7-17,1543-1533	6-6,1544-1544[SIL];18-21,1532-1529[UP3]	....(((((((((((.(((((&))))).)))))))))))....	UUUAUACAUAUUAUACAUAAC&GUUAUAUAUAAUAUGUAAUUA	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN14664_c0_g1_1540_TPlot.pdf
TRINITY_DN14668_c0_g2:146	si_s314	TRINITY_DN14668_c0_g2	134	162	146	-31.50	-21.20	0.673015873015873	16.5	1-7,162-156;8-19,148-137;20-21,135-134	x-x,155-149[BULt];x-x,136-136[BULt]	((.((((((((((((.......(((((((&)))))))-------))))))))))))-))	UGUUGACAAGAAGGAUGAUGAUCAGGAUU&AAUUCUG-------UCCUUCUUGUUA-CA	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN14668_c0_g2_146_TPlot.pdf
TRINITY_DN14669_c0_g1:1101	si_a415	TRINITY_DN14669_c0_g1	1084	1110	1101	-18.10	-12.80	0.707182320441989	12.5	1-10,1110-1101;11-21,1094-1084	x-x,1100-1095[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	CUGUAUUUAUUAAUAGAUAAAUAUAAA&UUUAUAUUUA------AAUAAAUAUAG	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN14669_c0_g1_1101_TPlot.pdf
TRINITY_DN14669_c0_g1:1109	si_a407	TRINITY_DN14669_c0_g1	1098	1118	1109	-19.80	-13.50	0.681818181818182	7	1-5,1118-1114;7-18,1112-1101	6-6,1113-1113[SIL];19-21,1100-1098[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AGAUAAAUAUAAAUAUGACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.999999989996195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN14669_c0_g1_1109_TPlot.pdf
TRINITY_DN14669_c0_g1:1110	si_a406	TRINITY_DN14669_c0_g1	1099	1119	1110	-19.80	-13.50	0.681818181818182	7	2-6,1118-1114;8-19,1112-1101	1-1,1119-1119[UP5];7-7,1113-1113[SIL];20-21,1100-1099[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	GAUAAAUAUAAAUAUGACAAG&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999560016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN14669_c0_g1_1110_TPlot.pdf
TRINITY_DN14669_c0_g1:1111	si_a405	TRINITY_DN14669_c0_g1	1100	1120	1111	-19.80	-13.50	0.681818181818182	8	3-7,1118-1114;9-20,1112-1101	1-2,1120-1119[UP5];8-8,1113-1113[SIL];21-21,1100-1100[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AUAAAUAUAAAUAUGACAAGU&AAUUGUUUUGUUUAUAUUUAA	2	0.999999999967765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN14669_c0_g1_1111_TPlot.pdf
TRINITY_DN1466_c0_g1:631	si_a72	TRINITY_DN1466_c0_g1	620	640	631	-21.90	-14.30	0.65296803652968	8	1-5,640-636;8-9,633-632;11-20,630-621	6-7,635-634[SIL];10-10,631-631[SIL];21-21,620-620[UP3]	.((((((((((.((..(((((&)))))..)).)))))))))).	UUGAUGAAGAAGAAGAUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1466_c0_g1_631_TPlot.pdf
TRINITY_DN1466_c0_g1:699	si_a70	TRINITY_DN1466_c0_g1	688	708	699	-23.90	-18.50	0.774058577405858	6	1-6,708-703;8-18,701-691	7-7,702-702[SIL];19-21,690-688[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	AUCGAAAAACAAUUGGAGAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1466_c0_g1_699_TPlot.pdf
TRINITY_DN1466_c0_g1:700	si_a69	TRINITY_DN1466_c0_g1	689	709	700	-24.00	-19.40	0.808333333333333	5	1-7,709-703;9-19,701-691	8-8,702-702[SIL];20-21,690-689[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	UCGAAAAACAAUUGGAGAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1466_c0_g1_700_TPlot.pdf
TRINITY_DN1466_c0_g1:710	si_s73	TRINITY_DN1466_c0_g1	699	719	710	-24.00	-17.80	0.741666666666667	9.5	3-18,717-702	1-2,719-718[UP5];19-21,701-699[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUUGGAGAGAAAAGGAAUGAA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999557893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1466_c0_g1_710_TPlot.pdf
TRINITY_DN14676_c1_g1:141	si_a471	TRINITY_DN14676_c1_g1	130	150	141	-21.10	-16.30	0.772511848341232	7.5	2-5,149-146;7-19,144-132	1-1,150-150[UP5];6-6,145-145[SIL];20-21,131-130[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AAGUGACGAUAAUUAGGUAUC&AAUAUGUAAUUAUUGUUAUAU	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN14676_c1_g1_141_TPlot.pdf
TRINITY_DN1467_c0_g2:1442	si_a787	TRINITY_DN1467_c0_g2	1431	1452	1442	-26.30	-17.10	0.650190114068441	5.5	2-6,1451-1447;7-19,1445-1433	1-1,1452-1452[UP5];x-x,1446-1446[BULt];20-21,1432-1431[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	CAGAAGAUAGAAAAAUUAGAAA&CUUCUA-UUUUUCUAUUUUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1467_c0_g2_1442_TPlot.pdf
TRINITY_DN1467_c0_g2:1478	si_s76	TRINITY_DN1467_c0_g2	1464	1487	1478	-23.60	-16.14	0.683898305084746	9	3-16,1485-1472;18-21,1467-1464	1-2,1487-1486[UP5];17-17,1471-1468[AILt]	((((....((((((((((((((..&..))))))))))))))---.))))	AAGAUUACAGGAAAGAAAGAAGGA&AUUUUUUUUCUUUCCU---UUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1467_c0_g2_1478_TPlot.pdf
TRINITY_DN1467_c0_g2:1487	si_s79	TRINITY_DN1467_c0_g2	1476	1496	1487	-26.20	-17.70	0.675572519083969	6.5	1-7,1496-1490;10-15,1487-1482;17-21,1480-1476	8-9,1489-1488[SIL];16-16,1481-1481[SIL]	(((((.((((((..(((((((&)))))))..)))))).)))))	AAGAAAGAAGGAUUGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1467_c0_g2_1487_TPlot.pdf
TRINITY_DN1467_c0_g2:1489	si_s77	TRINITY_DN1467_c0_g2	1478	1498	1489	-25.50	-17.30	0.67843137254902	6.5	1-9,1498-1490;12-17,1487-1482;19-21,1480-1478	10-11,1489-1488[SIL];18-18,1481-1481[SIL]	(((.((((((..(((((((((&)))))))))..)))))).)))	GAAAGAAGGAUUGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1467_c0_g2_1489_TPlot.pdf
TRINITY_DN14688_c0_g1:775	si_a322	TRINITY_DN14688_c0_g1	764	783	775	-27.00	-19.10	0.707407407407407	8	2-5,782-779;7-9,778-776;11-21,774-764	1-1,783-783[UP5];6-6,x-x[BULq];10-10,775-775[SIL]	(((((((((((.(((-((((.&.)))).))).)))))))))))	AGGAGUGAAAGUGUC-UGGAG&AUCCAUGAUUUUUUUAUUCCU	2	0.942165400938476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN14688_c0_g1_775_TPlot.pdf
TRINITY_DN14688_c0_g1:776	si_a321	TRINITY_DN14688_c0_g1	765	784	776	-26.70	-17.90	0.670411985018727	10	3-6,782-779;8-10,778-776;12-21,774-765	1-2,784-783[UP5];7-7,x-x[BULq];11-11,775-775[SIL]	((((((((((.(((-((((..&..)))).))).))))))))))	GGAGUGAAAGUGUC-UGGAGC&UAUCCAUGAUUUUUUUAUUCC	2	0.994632443542017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN14688_c0_g1_776_TPlot.pdf
TRINITY_DN1468_c0_g1:721	si_a479	TRINITY_DN1468_c0_g1	710	730	721	-23.00	-15.00	0.652173913043478	6	1-16,730-715;18-20,713-711	17-17,714-714[SIL];21-21,710-710[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	UGUAGUUUAUAUAACGGUAGU&AUUAUUGUUAUAUAGAAUAUG	2	0.987946290639231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN1468_c0_g1_721_TPlot.pdf
TRINITY_DN1468_c0_g1:722	si_a478	TRINITY_DN1468_c0_g1	711	731	722	-21.30	-14.90	0.699530516431925	6	2-17,730-715;19-21,713-711	1-1,731-731[UP5];18-18,714-714[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GUAGUUUAUAUAACGGUAGUA&AAUUAUUGUUAUAUAGAAUAU	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN1468_c0_g1_722_TPlot.pdf
TRINITY_DN1468_c0_g1:723	si_a477	TRINITY_DN1468_c0_g1	712	732	723	-21.50	-14.40	0.669767441860465	9.5	3-18,730-715	1-2,732-731[UP5];19-21,714-712[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAGUUUAUAUAACGGUAGUAA&UAAUUAUUGUUAUAUAGAAUA	2	0.995709762510726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN1468_c0_g1_723_TPlot.pdf
TRINITY_DN14693_c0_g1:294	si_a792	TRINITY_DN14693_c0_g1	283	303	294	-27.60	-19.30	0.699275362318841	14	7-20,297-284	1-6,303-298[UP5];21-21,283-283[UP3]	.((((((((((((((......&......)))))))))))))).	AGGGUUGGGAAAUGGUGCGCA&AUUUUUCUAUUUUCCAAUCCG	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN14693_c0_g1_294_TPlot.pdf
TRINITY_DN14693_c0_g1:295	si_a791	TRINITY_DN14693_c0_g1	284	304	295	-26.50	-18.90	0.713207547169811	15	8-21,297-284	1-7,304-298[UP5]	((((((((((((((.......&.......))))))))))))))	GGGUUGGGAAAUGGUGCGCAG&UAUUUUUCUAUUUUCCAAUCC	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN14693_c0_g1_295_TPlot.pdf
TRINITY_DN14698_c0_g1:184	si_s434	TRINITY_DN14698_c0_g1	173	193	184	-21.50	-14.30	0.665116279069767	7	1-2,193-192;4-14,190-180;16-20,178-174	3-3,191-191[SIL];15-15,179-179[SIL];21-21,173-173[UP3]	.(((((.(((((((((((.((&)).))))))))))).))))).	GGUGUAUUAUGUGGUUAUAGU&ACAAUAAUUACAUAUUAUAUA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN14698_c0_g1_184_TPlot.pdf
TRINITY_DN14699_c0_g1:316	si_a651	TRINITY_DN14699_c0_g1	305	325	316	-33.30	-22.90	0.687687687687688	4.5	1-19,325-307	20-21,306-305[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUGCGUUUUCUGAUAUAUUAU&GUAAUAUAUCGGGAAAUGCCU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a651_TRINITY_DN14699_c0_g1_316_TPlot.pdf
TRINITY_DN1469_c0_g1:959	si_a379	TRINITY_DN1469_c0_g1	947	968	959	-23.90	-17.30	0.723849372384937	8	3-16,966-953;17-19,951-949	1-2,968-967[UP5];x-x,952-952[BULt];20-21,948-947[UP3]	..(((.((((((((((((((..&..))))))))))))))-)))..	UACUUCGGUUCGAGAUCAUUGA&AAAAUGAUUUCGAAUU-AAGAA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a379_TRINITY_DN1469_c0_g1_959_TPlot.pdf
TRINITY_DN14700_c0_g1:2472	si_s696	TRINITY_DN14700_c0_g1	2461	2481	2472	-26.30	-22.40	0.85171102661597	6.5	4-20,2478-2462	1-3,2481-2479[UP5];21-21,2461-2461[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GACUAGUAAAUCGACUAAAAG&UAAUUAGUCGAUUUAUUAGUG	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN14700_c0_g1_2472_TPlot.pdf
TRINITY_DN14700_c0_g1:2866	si_a313	TRINITY_DN14700_c0_g1	2856	2875	2866	-28.70	-19.20	0.668989547038327	3.5	1-12,2875-2864;14-21,2863-2856	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	AAAAUUAU-GAUAGAUCUAAG&CUUGGAUUUAUCCAUGAUUUU	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN14700_c0_g1_2866_TPlot.pdf
TRINITY_DN14700_c0_g1:555	si_a635	TRINITY_DN14700_c0_g1	543	564	555	-26.10	-18.50	0.708812260536398	4.5	2-15,563-550;17-20,547-544	1-1,564-564[UP5];16-16,549-548[AILt];21-21,543-543[UP3]	.((((..((((((((((((((.&.))))))))))))))-.)))).	UUUGCAACAAAAAAAUCGACAA&AUGUCGAUUUUUUUG-AGUAAU	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN14700_c0_g1_555_TPlot.pdf
TRINITY_DN14700_c0_g1:557	si_a633	TRINITY_DN14700_c0_g1	545	566	557	-26.40	-17.50	0.662878787878788	7.5	4-17,563-550;19-21,547-545	1-3,566-564[UP5];18-18,549-548[AILt]	(((..((((((((((((((...&...))))))))))))))-.)))	UGCAACAAAAAAAUCGACAAUC&UUAUGUCGAUUUUUUUG-AGUA	4	0.999999999665697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN14700_c0_g1_557_TPlot.pdf
TRINITY_DN14702_c0_g1:1367	si_a520	TRINITY_DN14702_c0_g1	1355	1375	1367	-40.00	-26.40	0.66	12	4-5,1372-1371;8-15,1369-1362;16-21,1360-1355	1-3,1375-1373[UP5];6-7,1370-1370[AILq];x-x,1361-1361[BULt]	((((((.((((((((.-((...&...))..))))))))-))))))	CUCGCGAUGUUCGCCG-GCGAC&AAUGUAAGGCGGACA-CGCGAG	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a520_TRINITY_DN14702_c0_g1_1367_TPlot.pdf
TRINITY_DN1470_c0_g1:874	si_a753	TRINITY_DN1470_c0_g1	863	883	874	-33.10	-22.00	0.664652567975831	9.5	3-8,881-876;10-17,874-867	1-2,883-882[UP5];9-9,875-875[SIL];18-21,866-863[UP3]	....((((((((.((((((..&..)))))).))))))))....	CACCGCCCAAAGAAGGUUCUU&AUGAACCUCCUUUGGGUUUUU	2	0.998999857313047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN1470_c0_g1_874_TPlot.pdf
TRINITY_DN14711_c0_g1:270	si_s217	TRINITY_DN14711_c0_g1	259	279	270	-35.80	-23.60	0.659217877094972	5.5	3-14,277-266;16-21,264-259	1-2,279-278[UP5];15-15,265-265[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GUUUACAUGGUUUCGAACAAA&UGUGUUCGAAACCGCGUGAAU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN14711_c0_g1_270_TPlot.pdf
TRINITY_DN14714_c0_g1:163	si_a135	TRINITY_DN14714_c0_g1	153	172	163	-25.70	-16.80	0.653696498054475	6.5	3-17,170-156;19-21,155-153	1-2,172-171[UP5];18-18,x-x[BULq]	(((-(((((((((((((((..&..))))))))))))))).)))	GGC-AUGAUUAAUUGCUAUCA&CAAUAGUAAUUAAUCGUUGUU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN14714_c0_g1_163_TPlot.pdf
TRINITY_DN14724_c2_g3:131	si_s579	TRINITY_DN14724_c2_g3	118	140	131	-26.70	-17.80	0.666666666666667	6	1-4,140-137;7-16,134-125;17-21,122-118	5-6,136-135[SIL];x-x,124-123[BULt]	(((((..((((((((((..((((&))))..))))))))))--)))))	UAUCCCGAUGAUUUUUUAUUUCC&GGAAUAAAAAAAUCAU--GGAUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN14724_c2_g3_131_TPlot.pdf
TRINITY_DN1472_c0_g1:1848	si_s819	TRINITY_DN1472_c0_g1	1837	1857	1848	-23.00	-16.30	0.708695652173913	8.5	1-15,1857-1843	16-21,1842-1837[UP3]	......(((((((((((((((&)))))))))))))))......	UAUCCACGUUGUUGAGAAAAG&CUUUUCUUAAUAAUGAAAAAC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN1472_c0_g1_1848_TPlot.pdf
TRINITY_DN1472_c0_g1:1849	si_s818	TRINITY_DN1472_c0_g1	1838	1858	1849	-23.70	-16.60	0.70042194092827	8.5	2-16,1857-1843	1-1,1858-1858[UP5];17-21,1842-1838[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUCCACGUUGUUGAGAAAAGU&CCUUUUCUUAAUAAUGAAAAA	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN1472_c0_g1_1849_TPlot.pdf
TRINITY_DN1472_c0_g1:1850	si_s817	TRINITY_DN1472_c0_g1	1839	1859	1850	-24.50	-16.60	0.677551020408163	9	3-17,1857-1843	1-2,1859-1858[UP5];18-21,1842-1839[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCCACGUUGUUGAGAAAAGUU&ACCUUUUCUUAAUAAUGAAAA	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN1472_c0_g1_1850_TPlot.pdf
TRINITY_DN1472_c0_g1:1851	si_s816	TRINITY_DN1472_c0_g1	1840	1860	1851	-24.90	-16.60	0.666666666666667	10	4-18,1857-1843	1-3,1860-1858[UP5];19-21,1842-1840[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCACGUUGUUGAGAAAAGUUC&UACCUUUUCUUAAUAAUGAAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN1472_c0_g1_1851_TPlot.pdf
TRINITY_DN1472_c0_g1:1892	si_s443	TRINITY_DN1472_c0_g1	1881	1901	1892	-23.50	-15.90	0.676595744680851	7	1-12,1901-1890;15-18,1887-1884	13-14,1889-1888[SIL];19-21,1883-1881[UP3]	...((((..((((((((((((&))))))))))))..))))...	UUUUUGUGUUAUAUGAUGUGU&ACAUAUUAUAUAUAACAACAA	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN1472_c0_g1_1892_TPlot.pdf
TRINITY_DN1472_c0_g1:1893	si_s442	TRINITY_DN1472_c0_g1	1882	1902	1893	-23.80	-17.00	0.714285714285714	6	1-13,1902-1890;16-19,1887-1884	14-15,1889-1888[SIL];20-21,1883-1882[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	UUUUGUGUUAUAUGAUGUGUA&UACAUAUUAUAUAUAACAACA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN1472_c0_g1_1893_TPlot.pdf
TRINITY_DN1472_c0_g1:1894	si_s441	TRINITY_DN1472_c0_g1	1883	1903	1894	-23.20	-17.10	0.737068965517241	6	2-14,1902-1890;17-20,1887-1884	1-1,1903-1903[UP5];15-16,1889-1888[SIL];21-21,1883-1883[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	UUUGUGUUAUAUGAUGUGUAC&UUACAUAUUAUAUAUAACAAC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN1472_c0_g1_1894_TPlot.pdf
TRINITY_DN1472_c0_g1:1895	si_s440	TRINITY_DN1472_c0_g1	1884	1904	1895	-21.60	-17.10	0.791666666666667	7	3-15,1902-1890;18-21,1887-1884	1-2,1904-1903[UP5];16-17,1889-1888[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	UUGUGUUAUAUGAUGUGUACU&AUUACAUAUUAUAUAUAACAA	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN1472_c0_g1_1895_TPlot.pdf
TRINITY_DN1472_c0_g1:1896	si_s439	TRINITY_DN1472_c0_g1	1885	1905	1896	-21.50	-16.20	0.753488372093023	9	4-16,1902-1890;19-21,1887-1885	1-3,1905-1903[UP5];17-18,1889-1888[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	UGUGUUAUAUGAUGUGUACUA&AAUUACAUAUUAUAUAUAACA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN1472_c0_g1_1896_TPlot.pdf
TRINITY_DN1472_c0_g1:1897	si_s438	TRINITY_DN1472_c0_g1	1886	1906	1897	-21.20	-14.70	0.693396226415094	11	5-17,1902-1890;20-21,1887-1886	1-4,1906-1903[UP5];18-19,1889-1888[SIL]	((..(((((((((((((....&....)))))))))))))..))	GUGUUAUAUGAUGUGUACUAA&UAAUUACAUAUUAUAUAUAAC	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN1472_c0_g1_1897_TPlot.pdf
TRINITY_DN1472_c0_g1:397	si_s68	TRINITY_DN1472_c0_g1	386	406	397	-23.10	-16.90	0.731601731601731	5	1-7,406-400;10-14,397-393;16-21,391-386	8-9,399-398[SIL];15-15,392-392[SIL]	((((((.(((((..(((((((&)))))))..))))).))))))	AAAGAACAAAAAGUGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.999996237632989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1472_c0_g1_397_TPlot.pdf
TRINITY_DN1472_c0_g1:85	si_a665	TRINITY_DN1472_c0_g1	72	94	85	-29.60	-20.60	0.695945945945946	9.5	4-15,91-80;16-20,77-73	1-3,94-92[UP5];x-x,79-78[BULt];21-21,72-72[UP3]	.(((((..((((((((((((...&...))))))))))))--))))).	UGUGAGUAGGAUCAAUAGGCUUG&AAUGCCUAUUGAUUC--CUUAUU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN1472_c0_g1_85_TPlot.pdf
TRINITY_DN1472_c0_g1:947	si_s34	TRINITY_DN1472_c0_g1	937	956	947	-23.30	-17.00	0.729613733905579	4	1-7,956-950;9-17,948-940;19-21,939-937	8-8,949-949[SIL];18-18,x-x[BULq]	(((-(((((((((.(((((((&))))))).))))))))).)))	CGA-UAUUGAAGACUUAGUUG&CAACUAAAUCUUUAAUAAUUG	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN1472_c0_g1_947_TPlot.pdf
TRINITY_DN1472_c0_g1:949	si_s32	TRINITY_DN1472_c0_g1	938	958	949	-24.80	-16.50	0.665322580645161	6.5	1-1,958-958;3-9,956-950;11-19,948-940	2-2,957-957[SIL];10-10,949-949[SIL];20-21,939-938[UP3]	..(((((((((.(((((((.(&).))))))).)))))))))..	GAUAUUGAAGACUUAGUUGGA&UGCAACUAAAUCUUUAAUAAU	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN1472_c0_g1_949_TPlot.pdf
TRINITY_DN1472_c0_g1:950	si_s31	TRINITY_DN1472_c0_g1	939	959	950	-24.80	-17.40	0.701612903225806	5.5	1-2,959-958;4-10,956-950;12-20,948-940	3-3,957-957[SIL];11-11,949-949[SIL];21-21,939-939[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	AUAUUGAAGACUUAGUUGGAA&UUGCAACUAAAUCUUUAAUAA	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN1472_c0_g1_950_TPlot.pdf
TRINITY_DN1472_c0_g1:951	si_s30	TRINITY_DN1472_c0_g1	940	960	951	-24.80	-17.20	0.693548387096774	5.5	2-3,959-958;5-11,956-950;13-21,948-940	1-1,960-960[UP5];4-4,957-957[SIL];12-12,949-949[SIL]	(((((((((.(((((((.((.&.)).))))))).)))))))))	UAUUGAAGACUUAGUUGGAAA&AUUGCAACUAAAUCUUUAAUA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN1472_c0_g1_951_TPlot.pdf
TRINITY_DN14732_c0_g1:352	si_s189	TRINITY_DN14732_c0_g1	344	361	352	-27.90	-19.50	0.698924731182796	5.5	1-11,361-351;15-21,350-344	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	UAUUCCA---UGAUCGUUACU&AGUAACGAUUAUUUUGGAAUG	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN14732_c0_g1_352_TPlot.pdf
TRINITY_DN1473_c0_g1:1003	si_a68	TRINITY_DN1473_c0_g1	990	1012	1003	-25.40	-16.60	0.653543307086614	7.5	1-10,1012-1003;11-17,1000-994;19-20,992-991	x-x,1002-1001[BULt];18-18,993-993[SIL];21-21,990-990[UP3]	.((.(((((((..((((((((((&))))))))))--))))))).)).	AGGCAAACAAUUUUUGGAAGAAG&CUUCUUUCAA--AUUGUUUUUCA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1473_c0_g1_1003_TPlot.pdf
TRINITY_DN1473_c0_g1:1169	si_a303	TRINITY_DN1473_c0_g1	1159	1178	1169	-28.40	-20.30	0.714788732394366	6.5	3-10,1176-1169;12-20,1168-1160	1-2,1178-1177[UP5];11-11,x-x[BULq];21-21,1159-1159[UP3]	.(((((((((-((((((((..&..)))))))).))))))))).	UUAGAUCCAA-CGAAUCUUAA&AAAAGAUUCGCUUGGAUUUAU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN1473_c0_g1_1169_TPlot.pdf
TRINITY_DN1473_c0_g1:1170	si_a302	TRINITY_DN1473_c0_g1	1160	1179	1170	-28.20	-20.20	0.716312056737589	7.5	4-11,1176-1169;13-21,1168-1160	1-3,1179-1177[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	UAGAUCCAA-CGAAUCUUAAG&AAAAAGAUUCGCUUGGAUUUA	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN1473_c0_g1_1170_TPlot.pdf
TRINITY_DN1473_c0_g1:1171	si_a301	TRINITY_DN1473_c0_g1	1161	1180	1171	-27.80	-18.70	0.672661870503597	8.5	5-12,1176-1169;14-21,1168-1161	1-4,1180-1177[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	AGAUCCAA-CGAAUCUUAAGG&AAAAAAGAUUCGCUUGGAUUU	2	0.996655159151393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN1473_c0_g1_1171_TPlot.pdf
TRINITY_DN1473_c0_g1:1429	si_a7	TRINITY_DN1473_c0_g1	1418	1438	1429	-29.10	-20.40	0.701030927835051	4	1-12,1438-1427;14-18,1425-1421;20-21,1419-1418	13-13,1426-1426[SIL];19-19,1420-1420[SIL]	((.(((((.((((((((((((&)))))))))))).))))).))	GAUUGGGCGUUCUUUUCAAUU&AAUUGAAGAGAAAGCCUAUUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN1473_c0_g1_1429_TPlot.pdf
TRINITY_DN1473_c0_g1:1430	si_a6	TRINITY_DN1473_c0_g1	1419	1439	1430	-29.10	-21.60	0.742268041237113	4.5	1-13,1439-1427;15-19,1425-1421	14-14,1426-1426[SIL];20-21,1420-1419[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AUUGGGCGUUCUUUUCAAUUU&AAAUUGAAGAGAAAGCCUAUU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN1473_c0_g1_1430_TPlot.pdf
TRINITY_DN1473_c0_g1:1433	si_a3	TRINITY_DN1473_c0_g1	1422	1442	1433	-31.30	-20.60	0.65814696485623	7.5	4-16,1439-1427;18-21,1425-1422	1-3,1442-1440[UP5];17-17,1426-1426[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GGGCGUUCUUUUCAAUUUAAC&UUGAAAUUGAAGAGAAAGCCU	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN1473_c0_g1_1433_TPlot.pdf
TRINITY_DN1473_c0_g1:1471	si_s828	TRINITY_DN1473_c0_g1	1460	1480	1471	-21.90	-15.10	0.689497716894977	11	5-18,1476-1463	1-4,1480-1477[UP5];19-21,1462-1460[UP3]	...((((((((((((((....&....))))))))))))))...	CUGCGGAUUGUUUUUCAGCUG&AUAAUGAAAAACAAUUUGAAA	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN1473_c0_g1_1471_TPlot.pdf
TRINITY_DN1473_c0_g1:1472	si_s827	TRINITY_DN1473_c0_g1	1461	1481	1472	-21.90	-15.10	0.689497716894977	12	6-19,1476-1463	1-5,1481-1477[UP5];20-21,1462-1461[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGCGGAUUGUUUUUCAGCUGC&AAUAAUGAAAAACAAUUUGAA	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN1473_c0_g1_1472_TPlot.pdf
TRINITY_DN1473_c0_g1:1473	si_s826	TRINITY_DN1473_c0_g1	1462	1482	1473	-22.20	-15.10	0.68018018018018	13	7-20,1476-1463	1-6,1482-1477[UP5];21-21,1462-1462[UP3]	.((((((((((((((......&......)))))))))))))).	GCGGAUUGUUUUUCAGCUGCG&UAAUAAUGAAAAACAAUUUGA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s826_TRINITY_DN1473_c0_g1_1473_TPlot.pdf
TRINITY_DN1473_c0_g1:1474	si_s825	TRINITY_DN1473_c0_g1	1463	1483	1474	-21.30	-14.90	0.699530516431925	14	8-21,1476-1463	1-7,1483-1477[UP5]	((((((((((((((.......&.......))))))))))))))	CGGAUUGUUUUUCAGCUGCGC&UUAAUAAUGAAAAACAAUUUG	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN1473_c0_g1_1474_TPlot.pdf
TRINITY_DN1473_c0_g1:182	si_a410	TRINITY_DN1473_c0_g1	171	191	182	-17.80	-11.80	0.662921348314607	11.5	2-15,190-177	1-1,191-191[UP5];16-21,176-171[UP3]	......((((((((((((((.&.))))))))))))))......	UGAAGCUGAAUGUGGGCAAAU&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1473_c0_g1_182_TPlot.pdf
TRINITY_DN1473_c0_g1:614	si_a301	TRINITY_DN1473_c0_g1	603	623	614	-27.80	-18.50	0.665467625899281	11	5-16,619-608;19-21,605-603	1-4,623-620[UP5];17-18,607-606[SIL]	(((..((((((((((((....&....))))))))))))..)))	GGAAACAAGCGAGUCUUCAAA&AAAAAAGAUUCGCUUGGAUUU	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN1473_c0_g1_614_TPlot.pdf
TRINITY_DN1473_c0_g1:615	si_a300	TRINITY_DN1473_c0_g1	604	624	615	-28.20	-18.40	0.652482269503546	14	6-17,619-608	1-5,624-620[UP5];18-21,607-604[UP3]	....((((((((((((.....&.....))))))))))))....	GAAACAAGCGAGUCUUCAAAA&UAAAAAAGAUUCGCUUGGAUU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN1473_c0_g1_615_TPlot.pdf
TRINITY_DN14740_c0_g1:1481	si_a898	TRINITY_DN14740_c0_g1	1470	1490	1481	-20.50	-14.10	0.68780487804878	7	2-10,1489-1481;12-19,1479-1472	1-1,1490-1490[UP5];11-11,1480-1480[SIL];20-21,1471-1470[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	ACUUGUGUUAGUUAUUGUUAA&GUAAUAAUAAGUAAUAUAAAA	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN14740_c0_g1_1481_TPlot.pdf
TRINITY_DN14740_c0_g1:163	si_a880	TRINITY_DN14740_c0_g1	151	172	163	-27.80	-19.20	0.690647482014388	9	1-11,172-162;14-21,158-151	12-13,161-159[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	UACUAUGUCAAGUUGCAGCUGG&UUAGUUGCAAU-CAAUAUAGUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN14740_c0_g1_163_TPlot.pdf
TRINITY_DN14740_c0_g1:325	si_s806	TRINITY_DN14740_c0_g1	314	337	325	-28.60	-19.30	0.674825174825175	11	1-8,337-330;9-17,326-318;19-21,316-314	x-x,329-327[BULt];18-18,317-317[SIL]	(((.(((((((((...((((((((&))))))))---))))))))).)))	GGGUGAAGGUAGCGGUGAAGGUAG&UUAUCUUC---GUUACCUUUUCUU	4	0.999999999042038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN14740_c0_g1_325_TPlot.pdf
TRINITY_DN1475_c0_g1:783	si_s89	TRINITY_DN1475_c0_g1	772	792	783	-35.30	-23.40	0.662889518413598	6	3-15,790-778;17-20,776-773	1-2,792-791[UP5];16-16,777-777[SIL];21-21,772-772[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AGAAGAGAAGAAGAAGAAGAA&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1475_c0_g1_783_TPlot.pdf
TRINITY_DN14763_c0_g1:621	si_s73	TRINITY_DN14763_c0_g1	608	630	621	-24.00	-16.30	0.679166666666667	9	1-8,630-623;10-15,621-616;16-20,613-609	9-9,622-622[SIL];x-x,615-614[BULt];21-21,608-608[UP3]	.(((((..((((((.((((((((&)))))))).))))))--))))).	CGAGGAUUAGGAAGUAGAGUAGA&UCUAUUUUUUUUCUU--UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN14763_c0_g1_621_TPlot.pdf
TRINITY_DN14763_c0_g1:622	si_s72	TRINITY_DN14763_c0_g1	609	631	622	-24.10	-17.20	0.713692946058091	8	1-9,631-623;11-16,621-616;17-21,613-609	10-10,622-622[SIL];x-x,615-614[BULt]	(((((..((((((.(((((((((&))))))))).))))))--)))))	GAGGAUUAGGAAGUAGAGUAGAA&UUCUAUUUUUUUUCUU--UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14763_c0_g1_622_TPlot.pdf
TRINITY_DN14764_c0_g1:446	si_s79	TRINITY_DN14764_c0_g1	435	455	446	-26.20	-17.80	0.679389312977099	7.5	3-11,453-445;13-21,443-435	1-2,455-454[UP5];12-12,444-444[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AGGAAGAAAUGGAAGAAAGUA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN14764_c0_g1_446_TPlot.pdf
TRINITY_DN14766_c0_g1:629	si_s71	TRINITY_DN14766_c0_g1	618	638	629	-25.70	-18.70	0.727626459143969	6	1-17,638-622	18-21,621-618[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACACAAGAAAAAAAGUGGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999699057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14766_c0_g1_629_TPlot.pdf
TRINITY_DN14766_c0_g1:630	si_s70	TRINITY_DN14766_c0_g1	619	639	630	-25.80	-18.90	0.732558139534884	6	2-18,638-622	1-1,639-639[UP5];19-21,621-619[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CACAAGAAAAAAAGUGGAAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN14766_c0_g1_630_TPlot.pdf
TRINITY_DN14766_c0_g1:631	si_s69	TRINITY_DN14766_c0_g1	620	640	631	-23.40	-18.90	0.807692307692308	7	3-19,638-622	1-2,640-639[UP5];20-21,621-620[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACAAGAAAAAAAGUGGAAGGC&AACUUCUAUUUUUUUUCUUUC	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN14766_c0_g1_631_TPlot.pdf
TRINITY_DN14766_c0_g1:635	si_s65	TRINITY_DN14766_c0_g1	624	642	635	-26.00	-19.00	0.730769230769231	6	1-4,642-639;7-21,638-624	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GAAAAAAAGUGGAAG--GCUG&UAGCAACUUCUAUUUUUUUUC	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN14766_c0_g1_635_TPlot.pdf
TRINITY_DN14776_c0_g1:216	si_s73	TRINITY_DN14776_c0_g1	204	227	216	-24.00	-16.80	0.7	7.5	1-9,227-219;10-13,216-213;14-21,211-204	x-x,218-217[BULt];x-x,212-212[BULt]	((((((((.((((..(((((((((&)))))))))--))))-))))))))	AAAGGAGAUGGAAAAGAAAAUAGA&UCUAUUUUU--UUUC-UUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN14776_c0_g1_216_TPlot.pdf
TRINITY_DN14776_c0_g1:219	si_s72	TRINITY_DN14776_c0_g1	205	228	219	-24.10	-17.00	0.705394190871369	7	1-10,228-219;11-14,216-213;15-21,211-205	x-x,218-217[BULt];x-x,212-212[BULt]	(((((((.((((..((((((((((&))))))))))--))))-)))))))	AAGGAGAUGGAAAAGAAAAUAGAA&UUCUAUUUUU--UUUC-UUUCCUU	2	0.9999999999851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14776_c0_g1_219_TPlot.pdf
TRINITY_DN14776_c0_g1:220	si_s71	TRINITY_DN14776_c0_g1	206	229	220	-25.70	-19.00	0.739299610894942	7	1-11,229-219;12-15,216-213;16-21,211-206	x-x,218-217[BULt];x-x,212-212[BULt]	((((((.((((..(((((((((((&)))))))))))--))))-))))))	AGGAGAUGGAAAAGAAAAUAGAAG&CUUCUAUUUUU--UUUC-UUUCCU	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14776_c0_g1_220_TPlot.pdf
TRINITY_DN14776_c0_g1:221	si_a786	TRINITY_DN14776_c0_g1	206	230	221	-26.60	-18.90	0.710526315789474	10.5	1-11,230-220;12-20,215-207	x-x,219-216[BULt];21-21,206-206[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AGGAGAUGGAAAAGAAAAUAGAAGA&UCUUCUAUUUU----UCUAUUUUCC	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN14776_c0_g1_221_TPlot.pdf
TRINITY_DN14776_c0_g1:222	si_s69	TRINITY_DN14776_c0_g1	210	231	222	-23.40	-15.80	0.675213675213675	6	3-16,229-216;17-18,214-213;20-21,211-210	1-2,231-230[UP5];x-x,215-215[BULt];19-19,212-212[SIL]	((.((.((((((((((((((..&..))))))))))))))-)).))	GAUGGAAAAGAAAAUAGAAGAA&AACUUCUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN14776_c0_g1_222_TPlot.pdf
TRINITY_DN14776_c0_g1:242	si_a783	TRINITY_DN14776_c0_g1	230	252	242	-24.70	-17.50	0.708502024291498	5	1-7,252-246;8-13,244-239;14-21,237-230	x-x,245-245[BULt];x-x,238-238[BULt]	((((((((.((((((.(((((((&)))))))-))))))-))))))))	AAAUGGAGAAAAUAGAAAGGGUU&AACUCUU-CUAUUU-UUCUAUUU	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN14776_c0_g1_242_TPlot.pdf
TRINITY_DN14776_c0_g1:243	si_a782	TRINITY_DN14776_c0_g1	231	253	243	-26.40	-19.50	0.738636363636364	5	1-8,253-246;9-14,244-239;15-21,237-231	x-x,245-245[BULt];x-x,238-238[BULt]	(((((((.((((((.((((((((&))))))))-))))))-)))))))	AAUGGAGAAAAUAGAAAGGGUUG&CAACUCUU-CUAUUU-UUCUAUU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN14776_c0_g1_243_TPlot.pdf
TRINITY_DN14776_c0_g1:247	si_a779	TRINITY_DN14776_c0_g1	234	256	247	-27.00	-18.80	0.696296296296296	6	2-11,255-246;12-17,244-239;18-21,237-234	1-1,256-256[UP5];x-x,245-245[BULt];x-x,238-238[BULt]	((((.((((((.((((((((((.&.))))))))))-))))))-))))	GGAGAAAAUAGAAAGGGUUGAAG&AUUCAACUCUU-CUAUUU-UUCU	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN14776_c0_g1_247_TPlot.pdf
TRINITY_DN14776_c0_g1:252	si_s77	TRINITY_DN14776_c0_g1	241	261	252	-25.50	-16.80	0.658823529411765	9	1-9,261-253;12-19,250-243	10-11,252-251[SIL];20-21,242-241[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AUAGAAAGGGUUGAAGAGAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN14776_c0_g1_252_TPlot.pdf
TRINITY_DN14776_c0_g1:280	si_s71	TRINITY_DN14776_c0_g1	266	289	280	-25.70	-19.10	0.743190661478599	4.5	1-14,289-276;15-16,274-273;17-21,270-266	x-x,275-275[BULt];x-x,272-271[BULt]	(((((..((.((((((((((((((&))))))))))))))-))--)))))	AGGAAAUGGAAAAGAAAAUAGAAG&CUUCUAUUUUUUUU-CU--UUCCU	4	0.999999798976133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14776_c0_g1_280_TPlot.pdf
TRINITY_DN14776_c0_g1:283	si_a784	TRINITY_DN14776_c0_g1	268	292	283	-24.70	-16.70	0.676113360323887	8	3-13,290-280;14-21,275-268	1-2,292-291[UP5];x-x,279-276[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	GAAAUGGAAAAGAAAAUAGAAGAAA&ACUCUUCUAUUUU----UCUAUUUU	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14776_c0_g1_283_TPlot.pdf
TRINITY_DN1479_c0_g1:6053	si_s454	TRINITY_DN1479_c0_g1	6042	6062	6053	-25.50	-18.20	0.713725490196078	6.5	1-11,6062-6052;14-19,6049-6044	12-13,6051-6050[SIL];20-21,6043-6042[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	GCGUGGGGGUAUUGUUGUUAU&AUAACAACAAUUAUCUCAUAU	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN1479_c0_g1_6053_TPlot.pdf
TRINITY_DN147_c1_g1:273	si_s430	TRINITY_DN147_c1_g1	262	282	273	-21.30	-14.90	0.699530516431925	5.5	2-6,281-277;8-19,275-264	1-1,282-282[UP5];7-7,276-276[SIL];20-21,263-262[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	AUGUAUGUAAUUAUGGUUAUC&UAUAACAAUAAUUACAUAUUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN147_c1_g1_273_TPlot.pdf
TRINITY_DN14803_c0_g1:62	si_s70	TRINITY_DN14803_c0_g1	51	77	62	-25.80	-17.26	0.668992248062016	19	1-6,77-72;8-21,64-51	7-7,71-65[AILt]	((((((((((((((.......((((((&))))))------.))))))))))))))	GGGAAGAGAGGAAAAUCGACCGGGAGU&ACUUCU------AUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN14803_c0_g1_62_TPlot.pdf
TRINITY_DN14820_c2_g1:255	si_s836	TRINITY_DN14820_c2_g1	243	263	255	-29.40	-21.60	0.73469387755102	5	1-6,263-258;9-17,256-248;18-21,246-243	7-8,257-257[AILq];x-x,247-247[BULt]	((((.(((((((((.-((((((&))))))..)))))))))-))))	CUCGUCUUCUUUCAU-UUGUUU&AAACAAUUUGAAAGAAG-CGAG	1	0.00221510583622975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s836_TRINITY_DN14820_c2_g1_255_TPlot.pdf
TRINITY_DN14830_c0_g2:330	si_a766	TRINITY_DN14830_c0_g2	319	339	330	-30.50	-19.90	0.652459016393443	8.5	1-1,339-339;3-10,337-330;12-19,328-321	2-2,338-338[SIL];11-11,329-329[SIL];20-21,320-319[UP3]	..((((((((.((((((((.(&).)))))))).))))))))..	UCUUGGAUCAUUCAGAAGCGC&GGGUUUUUGAUUGAUUCAACU	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN14830_c0_g2_330_TPlot.pdf
TRINITY_DN14830_c0_g2:332	si_a764	TRINITY_DN14830_c0_g2	321	342	332	-28.90	-20.30	0.70242214532872	6.5	1-4,342-339;5-12,337-330;14-21,328-321	x-x,338-338[BULt];13-13,329-329[SIL]	((((((((.((((((((.((((&))))-)))))))).))))))))	UUGGAUCAUUCAGAAGCGCUAA&UUGG-GUUUUUGAUUGAUUCAA	2	0.977259987595635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN14830_c0_g2_332_TPlot.pdf
TRINITY_DN14830_c0_g2:542	si_a813	TRINITY_DN14830_c0_g2	531	551	542	-32.90	-22.20	0.674772036474164	5.5	1-5,551-547;7-19,545-533	6-6,546-546[SIL];20-21,532-531[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	CCCUUUUCUUCUUUUCCGCUU&AAGCGAAGAAGAAGAAAGGAA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN14830_c0_g2_542_TPlot.pdf
TRINITY_DN14836_c0_g2:19	si_a78	TRINITY_DN14836_c0_g2	8	27	19	-22.30	-14.70	0.659192825112108	8.5	1-6,27-22;9-19,20-10	7-8,21-21[AILq];20-21,9-8[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	GACUUAAUGAUGAC-AGCGAU&AUUGUUUUUCAUUAUUAAGAA	4	0.999999989278955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN14836_c0_g2_19_TPlot.pdf
TRINITY_DN14836_c0_g2:20	si_a77	TRINITY_DN14836_c0_g2	9	28	20	-22.20	-14.90	0.671171171171171	8.5	2-7,27-22;10-20,20-10	1-1,28-28[UP5];8-9,21-21[AILq];21-21,9-9[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	ACUUAAUGAUGAC-AGCGAUA&AAUUGUUUUUCAUUAUUAAGA	4	0.99999944725364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN14836_c0_g2_20_TPlot.pdf
TRINITY_DN14836_c0_g2:68	si_a661	TRINITY_DN14836_c0_g2	53	77	68	-35.80	-23.30	0.650837988826816	7	1-18,77-60;19-21,55-53	x-x,59-56[BULt]	(((....((((((((((((((((((&))))))))))))))))))----)))	AGGUGAAAAUUAGUAGGCAUUUUUC&GGGAAAUGCCUAUUGAUU----CCU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a661_TRINITY_DN14836_c0_g2_68_TPlot.pdf
TRINITY_DN14836_c0_g2:69	si_a660	TRINITY_DN14836_c0_g2	54	78	69	-36.60	-23.90	0.653005464480874	7	1-19,78-60;20-21,55-54	x-x,59-56[BULt]	((....(((((((((((((((((((&)))))))))))))))))))----))	GGUGAAAAUUAGUAGGCAUUUUUCG&CGGGAAAUGCCUAUUGAUU----CC	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN14836_c0_g2_69_TPlot.pdf
TRINITY_DN14836_c0_g2:70	si_a659	TRINITY_DN14836_c0_g2	59	79	70	-35.20	-23.90	0.678977272727273	5	2-20,78-60	1-1,79-79[UP5];21-21,59-59[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AAAUUAGUAGGCAUUUUUCGU&UCGGGAAAUGCCUAUUGAUUC	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN14836_c0_g2_70_TPlot.pdf
TRINITY_DN14840_c0_g1:248	si_a119	TRINITY_DN14840_c0_g1	236	257	248	-30.30	-19.70	0.65016501650165	7.5	2-7,256-251;9-15,249-243;16-18,241-239	1-1,257-257[UP5];8-8,250-250[SIL];x-x,242-242[BULt];19-21,238-236[UP3]	...(((.(((((((.((((((.&.)))))).)))))))-)))...	GACUGCUUGUAAAAGAAGCUCA&CGAGCUUGUUUUAUA-GCAAUA	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN14840_c0_g1_248_TPlot.pdf
TRINITY_DN14840_c0_g1:668	si_s414	TRINITY_DN14840_c0_g1	657	677	668	-24.90	-16.70	0.670682730923695	13.5	6-18,672-660	1-5,677-673[UP5];19-21,659-657[UP3]	...(((((((((((((.....&.....)))))))))))))...	GGUUAUGGAGUAUGUCACUAC&AAAACGACAUAUUCUAUAUAA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN14840_c0_g1_668_TPlot.pdf
TRINITY_DN14843_c0_g1:1348	si_a489	TRINITY_DN14843_c0_g1	1337	1357	1348	-27.70	-18.30	0.660649819494585	7.5	1-4,1357-1354;7-18,1351-1340;20-21,1338-1337	5-6,1353-1352[SIL];19-19,1339-1339[SIL]	((.((((((((((((..((((&))))..)))))))))))).))	CGUGGAACGACAUAUCAUGUG&UAUAGAAUAUGUCGUUUUUCG	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN14843_c0_g1_1348_TPlot.pdf
TRINITY_DN14843_c0_g1:1351	si_a486	TRINITY_DN14843_c0_g1	1340	1358	1351	-24.90	-16.20	0.650602409638554	7	1-6,1358-1353;8-9,1352-1351;11-21,1350-1340	7-7,x-x[BULq];10-10,x-x[BULq]	(((((((((((-((-((((((&)))))).)).)))))))))))	GGAACGACAUA-UC-AUGUGA&UUAUAUAGAAUAUGUCGUUUU	4	0.999951258254274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN14843_c0_g1_1351_TPlot.pdf
TRINITY_DN14844_c0_g1:3582	si_a793	TRINITY_DN14844_c0_g1	3571	3591	3582	-28.50	-18.80	0.659649122807018	10	3-6,3589-3586;8-9,3584-3583;11-21,3581-3571	1-2,3591-3590[UP5];7-7,3585-3585[SIL];10-10,3582-3582[SIL]	(((((((((((.((.((((..&..)))).)).)))))))))))	UCGGAUUGGGGCGUCGAAAUG&UUUUUCUAUUUUCCAAUCCGA	4	0.999995989923084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN14844_c0_g1_3582_TPlot.pdf
TRINITY_DN14844_c0_g1:4090	si_s78	TRINITY_DN14844_c0_g1	4079	4105	4090	-26.20	-19.70	0.751908396946565	15.5	1-9,4105-4097;10-20,4090-4080	x-x,4096-4091[BULt];21-21,4079-4079[UP3]	.(((((((((((......(((((((((&)))))))))------))))))))))).	CGAGGAAAGGAGAACAACAGAAAGAAA&UUUUUUUCU------UUCCUUUCUUCU	4	0.999999999990202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN14844_c0_g1_4090_TPlot.pdf
TRINITY_DN14844_c0_g1:4091	si_s72	TRINITY_DN14844_c0_g1	4080	4100	4091	-24.10	-17.40	0.721991701244813	6	1-4,4100-4097;6-7,4095-4094;9-21,4092-4080	5-5,4096-4096[SIL];8-8,4093-4093[SIL]	(((((((((((((.((.((((&)))).)).)))))))))))))	GAGGAAAGGAGAACAACAGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999999874	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14844_c0_g1_4091_TPlot.pdf
TRINITY_DN14844_c0_g1:4097	si_s77	TRINITY_DN14844_c0_g1	4080	4106	4097	-25.50	-19.50	0.764705882352941	15.5	2-10,4105-4097;11-21,4090-4080	1-1,4106-4106[UP5];x-x,4096-4091[BULt]	(((((((((((......(((((((((.&.)))))))))------)))))))))))	GAGGAAAGGAGAACAACAGAAAGAAAC&UUUUUUUUCU------UUCCUUUCUUC	2	0.999997639036914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN14844_c0_g1_4097_TPlot.pdf
TRINITY_DN14844_c0_g1:4098	si_s76	TRINITY_DN14844_c0_g1	4081	4107	4098	-23.60	-16.20	0.686440677966102	17.5	3-11,4105-4097;12-21,4090-4081	1-2,4107-4106[UP5];x-x,4096-4091[BULt]	((((((((((......(((((((((..&..)))))))))------))))))))))	AGGAAAGGAGAACAACAGAAAGAAACU&AUUUUUUUUCU------UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN14844_c0_g1_4098_TPlot.pdf
TRINITY_DN14844_c0_g1:4210	si_s65	TRINITY_DN14844_c0_g1	4199	4226	4210	-26.00	-17.30	0.665384615384615	17.5	1-5,4226-4222;6-20,4214-4200	x-x,4221-4215[BULt];21-21,4199-4199[UP3]	.(((((((((((((((.......(((((&)))))-------))))))))))))))).	AGAAGAAAAUAGAGGUAUGAAGGUGCUG&UAGCA-------ACUUCUAUUUUUUUUC	4	0.999999720304535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN14844_c0_g1_4210_TPlot.pdf
TRINITY_DN14844_c0_g1:5994	si_a598	TRINITY_DN14844_c0_g1	5982	6003	5994	-32.30	-21.60	0.668730650154799	7	1-11,6003-5993;13-18,5992-5987;19-21,5984-5982	12-12,x-x[BULq];x-x,5986-5985[BULt]	(((..((((((-(((((((((((&))))))))))).))))))--)))	UGGUAGGUUGC-AGAGUUCUGUC&GACAGAAUUUUCGCAAUU--CCA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN14844_c0_g1_5994_TPlot.pdf
TRINITY_DN14852_c0_g1:135	si_a203	TRINITY_DN14852_c0_g1	123	144	135	-26.90	-17.50	0.650557620817844	10.5	1-10,144-135;12-17,132-127	11-11,134-133[AILt];18-21,126-123[UP3]	....((((((..((((((((((&))))))))))-.))))))....	UGUGGGUCGGAGUUAUUGGUGA&UCACUAAUAA-AUCGACUAAUU	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN14852_c0_g1_135_TPlot.pdf
TRINITY_DN1485_c0_g1:149	si_s230	TRINITY_DN1485_c0_g1	138	159	149	-32.30	-21.90	0.678018575851393	7	1-6,159-154;7-19,152-140	x-x,153-153[BULt];20-21,139-138[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	AAAUUGAUUUCUUGUGUUACGC&GCGUGA-AUAAGGAAUCAAUAG	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s230_TRINITY_DN1485_c0_g1_149_TPlot.pdf
TRINITY_DN1485_c0_g1:150	si_s229	TRINITY_DN1485_c0_g1	139	160	150	-32.10	-22.00	0.685358255451713	6.5	2-7,159-154;8-20,152-140	1-1,160-160[UP5];x-x,153-153[BULt];21-21,139-139[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	AAUUGAUUUCUUGUGUUACGCA&CGCGUGA-AUAAGGAAUCAAUA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s229_TRINITY_DN1485_c0_g1_150_TPlot.pdf
TRINITY_DN1485_c0_g1:337	si_s191	TRINITY_DN1485_c0_g1	326	351	337	-26.60	-17.30	0.650375939849624	16	3-7,349-345;8-20,339-327	1-2,351-350[UP5];x-x,344-340[BULt];21-21,326-326[UP3]	.(((((((((((((.....(((((..&..)))))-----))))))))))))).	AACAUUCCAGAAUACCCUCAUUGUGA&UAACGAU-----UAUUUUGGAAUGUA	2	0.996613268617216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN1485_c0_g1_337_TPlot.pdf
TRINITY_DN14865_c0_g1:2333	si_s484	TRINITY_DN14865_c0_g1	2322	2342	2333	-20.50	-13.48	0.657560975609756	7.5	1-10,2342-2333;14-19,2329-2324	11-13,2332-2330[SIL];20-21,2323-2322[UP3]	..((((((...((((((((((&))))))))))...))))))..	UAGUAUUUUUUUAAAUAUAGG&CCUAUAUUUAUUUAAAUAUAA	2	0.998089543122984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN14865_c0_g1_2333_TPlot.pdf
TRINITY_DN14865_c0_g1:2431	si_a397	TRINITY_DN14865_c0_g1	2420	2439	2431	-24.00	-15.80	0.658333333333333	3.5	1-9,2439-2431;11-15,2430-2426;17-21,2424-2420	10-10,x-x[BULq];16-16,2425-2425[SIL]	(((((.(((((-(((((((((&))))))))).))))).)))))	AAACAUAAUAA-UCUAUAUUC&GAAUAUAGAAUUGUUUUGUUU	4	0.999998131673448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN14865_c0_g1_2431_TPlot.pdf
TRINITY_DN14865_c0_g1:2432	si_a395	TRINITY_DN14865_c0_g1	2422	2441	2432	-24.70	-16.30	0.659919028340081	3.5	1-11,2441-2431;13-17,2430-2426;19-21,2424-2422	12-12,x-x[BULq];18-18,2425-2425[SIL]	(((.(((((-(((((((((((&))))))))))).))))).)))	ACAUAAUAA-UCUAUAUUCUU&AAGAAUAUAGAAUUGUUUUGU	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN14865_c0_g1_2432_TPlot.pdf
TRINITY_DN14865_c0_g1:2436	si_a391	TRINITY_DN14865_c0_g1	2426	2445	2436	-22.80	-15.50	0.679824561403509	4.5	3-15,2443-2431;17-21,2430-2426	1-2,2445-2444[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	AAUAA-UCUAUAUUCUUAAAU&AAUUAAGAAUAUAGAAUUGUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN14865_c0_g1_2436_TPlot.pdf
TRINITY_DN14865_c0_g1:2437	si_a390	TRINITY_DN14865_c0_g1	2427	2446	2437	-24.80	-16.40	0.661290322580645	3.5	1-2,2446-2445;4-16,2443-2431;18-21,2430-2427	3-3,2444-2444[SIL];17-17,x-x[BULq]	((((-(((((((((((((.((&)).))))))))))))).))))	AUAA-UCUAUAUUCUUAAAUC&GAAUUAAGAAUAUAGAAUUGU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a390_TRINITY_DN14865_c0_g1_2437_TPlot.pdf
TRINITY_DN14865_c0_g1:2461	si_s192	TRINITY_DN14865_c0_g1	2450	2470	2461	-28.00	-20.10	0.717857142857143	8	1-5,2470-2466;8-21,2463-2450	6-7,2465-2464[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GUAUGUUCCAAGGUUUUUGUU&AACGAUUAUUUUGGAAUGUAC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN14865_c0_g1_2461_TPlot.pdf
TRINITY_DN14865_c0_g1:2462	si_s191	TRINITY_DN14865_c0_g1	2451	2471	2462	-26.60	-18.30	0.68796992481203	8	1-6,2471-2466;9-21,2463-2451	7-8,2465-2464[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UAUGUUCCAAGGUUUUUGUUA&UAACGAUUAUUUUGGAAUGUA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN14865_c0_g1_2462_TPlot.pdf
TRINITY_DN14865_c0_g1:2463	si_s190	TRINITY_DN14865_c0_g1	2452	2472	2463	-28.00	-18.20	0.65	8.5	1-7,2472-2466;10-21,2463-2452	8-9,2465-2464[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AUGUUCCAAGGUUUUUGUUAU&GUAACGAUUAUUUUGGAAUGU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN14865_c0_g1_2463_TPlot.pdf
TRINITY_DN14865_c0_g1:2465	si_s188	TRINITY_DN14865_c0_g1	2454	2474	2465	-28.20	-19.00	0.673758865248227	8	1-9,2474-2466;12-21,2463-2454	10-11,2465-2464[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GUUCCAAGGUUUUUGUUAUUU&GAGUAACGAUUAUUUUGGAAU	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN14865_c0_g1_2465_TPlot.pdf
TRINITY_DN14865_c0_g3:640	si_s684	TRINITY_DN14865_c0_g3	629	649	640	-28.30	-18.70	0.660777385159011	10	4-13,646-637;15-20,635-630	1-3,649-647[UP5];14-14,636-636[SIL];21-21,629-629[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AGCUGGUAGAGCUCAUGUGUU&GAAACAUGAGUUUAAUUAGUC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN14865_c0_g3_640_TPlot.pdf
TRINITY_DN14865_c0_g3:641	si_s683	TRINITY_DN14865_c0_g3	630	650	641	-27.00	-18.50	0.685185185185185	11	5-14,646-637;16-21,635-630	1-4,650-647[UP5];15-15,636-636[SIL]	((((((.((((((((((....&....)))))))))).))))))	GCUGGUAGAGCUCAUGUGUUG&AGAAACAUGAGUUUAAUUAGU	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s683_TRINITY_DN14865_c0_g3_641_TPlot.pdf
TRINITY_DN14865_c0_g3:801	si_a408	TRINITY_DN14865_c0_g3	790	810	801	-20.10	-15.10	0.751243781094527	10	2-18,809-793	1-1,810-810[UP5];19-21,792-790[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUGUUGAGUGUGGACAAGAUC&UGUUUUGUUUAUAUUUAAAUA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN14865_c0_g3_801_TPlot.pdf
TRINITY_DN14865_c0_g3:860	si_a734	TRINITY_DN14865_c0_g3	850	870	860	-42.40	-29.00	0.683962264150943	7	1-3,870-868;4-7,866-863;9-14,861-856;16-21,855-850	x-x,867-867[BULt];8-8,862-862[SIL];15-15,x-x[BULq]	((((((-((((((.((((.(((&)))-)))).)))))).))))))	GUGGCU-GGGGUGCAGAUGGCC&GGC-AUCUUUACCCCUGGCCAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN14865_c0_g3_860_TPlot.pdf
TRINITY_DN14865_c0_g4:1005	si_s484	TRINITY_DN14865_c0_g4	994	1014	1005	-20.50	-13.48	0.657560975609756	7.5	1-10,1014-1005;14-19,1001-996	11-13,1004-1002[SIL];20-21,995-994[UP3]	..((((((...((((((((((&))))))))))...))))))..	UAGUAUUUUUUUAAAUAUAGG&CCUAUAUUUAUUUAAAUAUAA	2	0.998065616705339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN14865_c0_g4_1005_TPlot.pdf
TRINITY_DN14865_c0_g4:1104	si_a395	TRINITY_DN14865_c0_g4	1094	1113	1104	-24.70	-16.30	0.659919028340081	3.5	1-11,1113-1103;13-17,1102-1098;19-21,1096-1094	12-12,x-x[BULq];18-18,1097-1097[SIL]	(((.(((((-(((((((((((&))))))))))).))))).)))	ACAUAAUAA-UCUAUAUUCUU&AAGAAUAUAGAAUUGUUUUGU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN14865_c0_g4_1104_TPlot.pdf
TRINITY_DN14865_c0_g4:1108	si_a391	TRINITY_DN14865_c0_g4	1098	1117	1108	-22.80	-15.50	0.679824561403509	4.5	3-15,1115-1103;17-21,1102-1098	1-2,1117-1116[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	AAUAA-UCUAUAUUCUUAAAU&AAUUAAGAAUAUAGAAUUGUU	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN14865_c0_g4_1108_TPlot.pdf
TRINITY_DN14865_c0_g4:1109	si_a390	TRINITY_DN14865_c0_g4	1099	1118	1109	-24.80	-16.40	0.661290322580645	3.5	1-2,1118-1117;4-16,1115-1103;18-21,1102-1099	3-3,1116-1116[SIL];17-17,x-x[BULq]	((((-(((((((((((((.((&)).))))))))))))).))))	AUAA-UCUAUAUUCUUAAAUC&GAAUUAAGAAUAUAGAAUUGU	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a390_TRINITY_DN14865_c0_g4_1109_TPlot.pdf
TRINITY_DN14865_c0_g4:1133	si_s192	TRINITY_DN14865_c0_g4	1122	1142	1133	-28.00	-20.10	0.717857142857143	8	1-5,1142-1138;8-21,1135-1122	6-7,1137-1136[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GUAUGUUCCAAGGUUUUUGUU&AACGAUUAUUUUGGAAUGUAC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN14865_c0_g4_1133_TPlot.pdf
TRINITY_DN14865_c0_g4:1134	si_s191	TRINITY_DN14865_c0_g4	1123	1143	1134	-26.60	-18.30	0.68796992481203	8	1-6,1143-1138;9-21,1135-1123	7-8,1137-1136[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UAUGUUCCAAGGUUUUUGUUA&UAACGAUUAUUUUGGAAUGUA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN14865_c0_g4_1134_TPlot.pdf
TRINITY_DN14865_c0_g4:1135	si_s190	TRINITY_DN14865_c0_g4	1124	1144	1135	-28.00	-18.20	0.65	8.5	1-7,1144-1138;10-21,1135-1124	8-9,1137-1136[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AUGUUCCAAGGUUUUUGUUAU&GUAACGAUUAUUUUGGAAUGU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN14865_c0_g4_1135_TPlot.pdf
TRINITY_DN14865_c0_g4:1137	si_s188	TRINITY_DN14865_c0_g4	1126	1146	1137	-28.20	-19.00	0.673758865248227	8	1-9,1146-1138;12-21,1135-1126	10-11,1137-1136[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GUUCCAAGGUUUUUGUUAUUU&GAGUAACGAUUAUUUUGGAAU	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN14865_c0_g4_1137_TPlot.pdf
TRINITY_DN1487_c0_g1:3904	si_s441	TRINITY_DN1487_c0_g1	3893	3913	3904	-23.20	-17.00	0.732758620689655	9	1-7,3913-3907;10-19,3904-3895	8-9,3906-3905[SIL];20-21,3894-3893[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	AAUGUUGUGUGUUUUGUGUAA&UUACAUAUUAUAUAUAACAAC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN1487_c0_g1_3904_TPlot.pdf
TRINITY_DN14881_c0_g1:65	si_a862	TRINITY_DN14881_c0_g1	54	74	65	-22.70	-15.10	0.665198237885463	8	1-7,74-68;10-17,65-58	8-9,67-66[SIL];18-21,57-54[UP3]	....((((((((..(((((((&)))))))..))))))))....	UAUCUCUUUAAUCUUUGGAUU&AAUCCAAUUAUUAAAGAUUUA	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN14881_c0_g1_65_TPlot.pdf
TRINITY_DN14881_c0_g1:66	si_a861	TRINITY_DN14881_c0_g1	55	75	66	-22.30	-16.30	0.730941704035874	7	1-8,75-68;11-18,65-58	9-10,67-66[SIL];19-21,57-55[UP3]	...((((((((..((((((((&))))))))..))))))))...	AUCUCUUUAAUCUUUGGAUUU&AAAUCCAAUUAUUAAAGAUUU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN14881_c0_g1_66_TPlot.pdf
TRINITY_DN14881_c0_g1:67	si_a860	TRINITY_DN14881_c0_g1	56	76	67	-24.30	-16.60	0.683127572016461	7	2-9,75-68;12-19,65-58	1-1,76-76[UP5];10-11,67-66[SIL];20-21,57-56[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	UCUCUUUAAUCUUUGGAUUUA&GAAAUCCAAUUAUUAAAGAUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN14881_c0_g1_67_TPlot.pdf
TRINITY_DN14881_c0_g1:68	si_a859	TRINITY_DN14881_c0_g1	57	77	68	-25.00	-16.60	0.664	8	3-10,75-68;13-20,65-58	1-2,77-76[UP5];11-12,67-66[SIL];21-21,57-57[UP3]	.((((((((..((((((((..&..))))))))..)))))))).	CUCUUUAAUCUUUGGAUUUAA&UGAAAUCCAAUUAUUAAAGAU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a859_TRINITY_DN14881_c0_g1_68_TPlot.pdf
TRINITY_DN14881_c0_g1:69	si_a858	TRINITY_DN14881_c0_g1	58	78	69	-24.90	-16.50	0.662650602409639	8	4-11,75-68;14-21,65-58	1-3,78-76[UP5];12-13,67-66[SIL]	((((((((..((((((((...&...))))))))..))))))))	UCUUUAAUCUUUGGAUUUAAU&UUGAAAUCCAAUUAUUAAAGA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a858_TRINITY_DN14881_c0_g1_69_TPlot.pdf
TRINITY_DN14883_c0_g1:15	si_s696	TRINITY_DN14883_c0_g1	1	24	15	-26.30	-17.80	0.67680608365019	11	1-11,24-14;12-20,10-2	x-x,13-11[BULt];21-21,1-1[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	GGCUGGUAGAGACUUGACUGAUUA&UAAUUAGUCGA---UUUAUUAGUG	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN14883_c0_g1_15_TPlot.pdf
TRINITY_DN14883_c0_g1:16	si_s695	TRINITY_DN14883_c0_g1	2	25	16	-24.70	-17.80	0.720647773279352	11	2-12,24-14;13-21,10-2	1-1,25-25[UP5];x-x,13-11[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	GCUGGUAGAGACUUGACUGAUUAC&UUAAUUAGUCGA---UUUAUUAGU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN14883_c0_g1_16_TPlot.pdf
TRINITY_DN14883_c0_g1:17	si_s694	TRINITY_DN14883_c0_g1	3	26	17	-23.90	-16.20	0.677824267782427	9.5	3-13,24-14;14-21,10-3	1-2,26-25[UP5];x-x,13-11[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	CUGGUAGAGACUUGACUGAUUACC&UUUAAUUAGUCGA---UUUAUUAG	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN14883_c0_g1_17_TPlot.pdf
TRINITY_DN14883_c0_g1:23	si_s688	TRINITY_DN14883_c0_g1	12	31	23	-28.20	-19.10	0.677304964539007	7	1-6,31-26;9-19,24-14	7-8,25-25[AILq];20-21,13-12[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	ACUUGACUGAUUAC-CUCAUG&CAUGAGUUUAAUUAGUCGAUU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN14883_c0_g1_23_TPlot.pdf
TRINITY_DN14883_c0_g1:24	si_s687	TRINITY_DN14883_c0_g1	13	32	24	-29.00	-19.10	0.658620689655173	7	2-7,31-26;10-20,24-14	1-1,32-32[UP5];8-9,25-25[AILq];21-21,13-13[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	CUUGACUGAUUAC-CUCAUGA&ACAUGAGUUUAAUUAGUCGAU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s687_TRINITY_DN14883_c0_g1_24_TPlot.pdf
TRINITY_DN14883_c0_g1:25	si_s686	TRINITY_DN14883_c0_g1	14	33	25	-28.80	-19.00	0.659722222222222	8	3-8,31-26;11-21,24-14	1-2,33-32[UP5];9-10,25-25[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	UUGACUGAUUAC-CUCAUGAA&AACAUGAGUUUAAUUAGUCGA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s686_TRINITY_DN14883_c0_g1_25_TPlot.pdf
TRINITY_DN14886_c0_g1:14	si_a884	TRINITY_DN14886_c0_g1	3	23	14	-25.60	-16.70	0.65234375	8	1-4,23-20;6-9,18-15;11-19,13-5	5-5,19-19[SIL];10-10,14-14[SIL];20-21,4-3[UP3]	..(((((((((.((((.((((&)))).)))).)))))))))..	GGAUUGCUGUGAUGAUAGCAA&UUGCAAUCAAUAUAGUAAUAA	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN14886_c0_g1_14_TPlot.pdf
TRINITY_DN14887_c0_g1:3419	si_a347	TRINITY_DN14887_c0_g1	3406	3428	3419	-23.50	-17.60	0.748936170212766	6.5	1-14,3428-3415;15-18,3412-3409	x-x,3414-3413[BULt];19-21,3408-3406[UP3]	...((((..((((((((((((((&))))))))))))))--))))...	UUUUGGAUCAUUGAUAUUUUCGG&CCGAAAAUAUUAAU--UCUAUUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN14887_c0_g1_3419_TPlot.pdf
TRINITY_DN14887_c0_g1:3421	si_a345	TRINITY_DN14887_c0_g1	3408	3430	3421	-26.90	-18.00	0.669144981412639	7	3-16,3428-3415;17-20,3412-3409	1-2,3430-3429[UP5];x-x,3414-3413[BULt];21-21,3408-3408[UP3]	.((((..((((((((((((((..&..))))))))))))))--)))).	UUGGAUCAUUGAUAUUUUCGGAA&UCCCGAAAAUAUUAAU--UCUAU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN14887_c0_g1_3421_TPlot.pdf
TRINITY_DN14889_c0_g1:1676	si_a467	TRINITY_DN14889_c0_g1	1665	1685	1676	-21.10	-13.90	0.658767772511848	8	1-16,1685-1670;18-19,1668-1667	17-17,1669-1669[SIL];20-21,1666-1665[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	AUCAUUAAUUAUGUGUUGUGU&AUAUAAUAUGUAAUUAUUGUU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN14889_c0_g1_1676_TPlot.pdf
TRINITY_DN14889_c0_g1:1679	si_a464	TRINITY_DN14889_c0_g1	1668	1688	1679	-19.60	-13.70	0.698979591836735	9.5	3-19,1686-1670	1-2,1688-1687[UP5];20-21,1669-1668[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUUAAUUAUGUGUUGUGUACA&UAUAUAUAAUAUGUAAUUAUU	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN14889_c0_g1_1679_TPlot.pdf
TRINITY_DN14889_c0_g1:1680	si_a463	TRINITY_DN14889_c0_g1	1669	1689	1680	-19.70	-13.70	0.695431472081218	10	4-20,1686-1670	1-3,1689-1687[UP5];21-21,1669-1669[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUAAUUAUGUGUUGUGUACAU&UUAUAUAUAAUAUGUAAUUAU	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN14889_c0_g1_1680_TPlot.pdf
TRINITY_DN14891_c0_g1:2936	si_a502	TRINITY_DN14891_c0_g1	2925	2945	2936	-32.10	-21.50	0.669781931464174	9	1-6,2945-2940;8-19,2938-2927	7-7,2939-2939[SIL];20-21,2926-2925[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	ACUCUGAGGAAGGCAAAGGGC&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999964765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN14891_c0_g1_2936_TPlot.pdf
TRINITY_DN14891_c1_g1:968	si_s802	TRINITY_DN14891_c1_g1	957	977	968	-26.40	-17.40	0.659090909090909	9	3-12,975-966;14-18,964-960	1-2,977-976[UP5];13-13,965-965[SIL];19-21,959-957[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	ACCGGUGGAGAGGAUAAAAAC&UAUUUUAUCUUCGUUACCUUU	4	0.999999999986919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN14891_c1_g1_968_TPlot.pdf
TRINITY_DN14893_c0_g1:197	si_s776	TRINITY_DN14893_c0_g1	186	206	197	-25.10	-16.40	0.653386454183267	13	8-21,199-186	1-7,206-200[UP5]	((((((((((((((.......&.......))))))))))))))	UUGUUUUAUAGCAAGUCCUGA&AUUACUAUUGCUAUAAAACAA	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN14893_c0_g1_197_TPlot.pdf
TRINITY_DN14894_c0_g1:1140	si_s502	TRINITY_DN14894_c0_g1	1129	1149	1140	-22.40	-15.90	0.709821428571429	5	1-6,1149-1144;8-11,1142-1139;13-21,1137-1129	7-7,1143-1143[SIL];12-12,1138-1138[SIL]	(((((((((.((((.((((((&)))))).)))).)))))))))	AAUGUGGAAGUGUUAUGUUUA&UAAACAAAACAAUUCUAUAUU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN14894_c0_g1_1140_TPlot.pdf
TRINITY_DN14896_c0_g1:1687	si_s83	TRINITY_DN14896_c0_g1	1675	1697	1687	-30.90	-23.20	0.750809061488673	6	2-9,1696-1689;10-19,1687-1678;20-21,1676-1675	1-1,1697-1697[UP5];x-x,1688-1688[BULt];x-x,1677-1677[BULt]	((.((((((((((.((((((((.&.))))))))-))))))))))-))	GACAGAAGAAGGAUGGGAAAGAC&UUCUUUCCU-UUCUUCUUCU-UC	4	0.999998763609859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN14896_c0_g1_1687_TPlot.pdf
TRINITY_DN14896_c0_g1:2574	si_s88	TRINITY_DN14896_c0_g1	2564	2583	2574	-34.80	-24.00	0.689655172413793	3	1-12,2583-2572;14-16,2570-2568;18-21,2567-2564	13-13,2571-2571[SIL];17-17,x-x[BULq]	((((-(((.((((((((((((&)))))))))))).))).))))	GAAG-GAAAAAGAAGAGAGGA&UCCUUUCUUCUUCUUCGCUUC	2	0.999997889226889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN14896_c0_g1_2574_TPlot.pdf
TRINITY_DN14896_c0_g1:2576	si_a787	TRINITY_DN14896_c0_g1	2566	2585	2576	-26.30	-17.80	0.67680608365019	7	1-5,2585-2581;7-13,2579-2573;15-20,2572-2567	6-6,2580-2580[SIL];14-14,x-x[BULq];21-21,2566-2566[UP3]	.((((((-(((((((.(((((&))))).))))))).)))))).	AGGAAAA-AGAAGAGAGGAAG&CUUCUAUUUUUCUAUUUUCCA	2	0.999999847269923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN14896_c0_g1_2576_TPlot.pdf
TRINITY_DN14896_c0_g1:2578	si_s84	TRINITY_DN14896_c0_g1	2567	2587	2578	-32.30	-23.50	0.727554179566564	5	2-16,2586-2572;18-20,2570-2568	1-1,2587-2587[UP5];17-17,2571-2571[SIL];21-21,2567-2567[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	GGAAAAAGAAGAGAGGAAGGC&UCUUUCCUUUCUUCUUCUUCG	2	0.999799192897878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN14896_c0_g1_2578_TPlot.pdf
TRINITY_DN14896_c0_g1:2579	si_s895	TRINITY_DN14896_c0_g1	2568	2591	2579	-31.10	-20.30	0.652733118971061	10	2-8,2590-2584;9-15,2580-2574;18-21,2571-2568	1-1,2591-2591[UP5];x-x,2583-2581[BULt];16-17,2573-2572[SIL]	((((..(((((((...(((((((.&.)))))))---)))))))..))))	GAAAAAGAAGAGAGGAAGGCCUAG&AUAGGCUU---UCUCUUCAAUUUC	4	0.99999984942962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN14896_c0_g1_2579_TPlot.pdf
TRINITY_DN14896_c0_g1:2595	si_s71	TRINITY_DN14896_c0_g1	2580	2604	2595	-25.70	-20.50	0.797665369649806	9	1-14,2604-2591;15-21,2586-2580	x-x,2590-2587[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	AGGAAGGCCUAGAAGGAAAUGGAGG&CUUCUAUUUUUUUU----CUUUCCU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14896_c0_g1_2595_TPlot.pdf
TRINITY_DN14899_c0_g1:2028	si_a289	TRINITY_DN14899_c0_g1	2017	2037	2028	-28.20	-18.60	0.659574468085106	10.5	1-13,2037-2025	14-21,2024-2017[UP3]	........(((((((((((((&)))))))))))))........	GUUCAACCUGAAUCCGAGCGG&UCGCUUGGAUUUAAAAAAGAU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN14899_c0_g1_2028_TPlot.pdf
TRINITY_DN1489_c0_g1:1516	si_s437	TRINITY_DN1489_c0_g1	1505	1527	1516	-19.70	-12.90	0.654822335025381	9.5	1-9,1527-1519;10-18,1516-1508	x-x,1518-1517[BULt];19-21,1507-1505[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	UGUUAUAUGAUAAUUGUGAUUGU&AUAAUUACA--UAUUAUAUAUAA	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN1489_c0_g1_1516_TPlot.pdf
TRINITY_DN148_c0_g1:1031	si_a764	TRINITY_DN148_c0_g1	1021	1040	1031	-28.90	-19.20	0.664359861591695	8.5	3-13,1038-1028;15-19,1027-1023	1-2,1040-1039[UP5];14-14,x-x[BULq];20-21,1022-1021[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	AAGAGUC-AUCAAGAAUCCUC&UUGGGUUUUUGAUUGAUUCAA	4	0.999999911965456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN148_c0_g1_1031_TPlot.pdf
TRINITY_DN148_c0_g1:1433	si_a72	TRINITY_DN148_c0_g1	1422	1442	1433	-21.90	-15.00	0.684931506849315	7.5	1-4,1442-1439;6-17,1437-1426	5-5,1438-1438[SIL];18-21,1425-1422[UP3]	....((((((((((((.((((&)))).))))))))))))....	UAACUGAAGAACAAUUGGAGA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999987265962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN148_c0_g1_1433_TPlot.pdf
TRINITY_DN148_c0_g1:1434	si_a71	TRINITY_DN148_c0_g1	1423	1443	1434	-23.30	-15.20	0.652360515021459	7.5	2-5,1442-1439;7-18,1437-1426	1-1,1443-1443[UP5];6-6,1438-1438[SIL];19-21,1425-1423[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	AACUGAAGAACAAUUGGAGAA&CUUUCAAAUUGUUUUUCAUUA	2	0.999999994827689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN148_c0_g1_1434_TPlot.pdf
TRINITY_DN148_c0_g1:1806	si_s693	TRINITY_DN148_c0_g1	1795	1813	1806	-23.90	-15.70	0.656903765690377	8.5	1-3,1813-1811;6-20,1810-1796	4-5,x-x[BULq];21-21,1795-1795[UP3]	.(((((((((((((((--(((&)))..))))))))))))))).	CAAUAAAUUGGCUGAU--GAC&GUUUAAUUAGUCGAUUUAUUA	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN148_c0_g1_1806_TPlot.pdf
TRINITY_DN148_c0_g1:852	si_s693	TRINITY_DN148_c0_g1	841	861	852	-23.90	-16.70	0.698744769874477	11.5	6-21,856-841	1-5,861-857[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAAUGAAUCGAUUAGUGGUGA&GUUUAAUUAGUCGAUUUAUUA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN148_c0_g1_852_TPlot.pdf
TRINITY_DN14901_c0_g1:101	si_a404	TRINITY_DN14901_c0_g1	90	110	101	-21.70	-14.80	0.682027649769585	10.5	1-15,110-96	16-21,95-90[UP3]	......(((((((((((((((&)))))))))))))))......	UGUGGCUGAACAGGAUAGUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999999985845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN14901_c0_g1_101_TPlot.pdf
TRINITY_DN14901_c0_g1:172	si_a356	TRINITY_DN14901_c0_g1	150	181	172	-26.90	-18.90	0.702602230483271	14.5	1-15,181-167;16-21,155-150	x-x,166-156[BULt]	((((((...........(((((((((((((((&)))))))))))))))-----------))))))	AUCCGAGAAUGGGAAUUUCGAAAUGGAGUUGA&UUAAUUCUAUUUUGA-----------UCGGAU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN14901_c0_g1_172_TPlot.pdf
TRINITY_DN14901_c0_g1:173	si_a355	TRINITY_DN14901_c0_g1	151	182	173	-26.80	-19.20	0.716417910447761	14.5	1-16,182-167;17-21,155-151	x-x,166-156[BULt]	(((((...........((((((((((((((((&))))))))))))))))-----------)))))	UCCGAGAAUGGGAAUUUCGAAAUGGAGUUGAU&AUUAAUUCUAUUUUGA-----------UCGGA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN14901_c0_g1_173_TPlot.pdf
TRINITY_DN14901_c0_g1:174	si_a354	TRINITY_DN14901_c0_g1	152	183	174	-26.20	-18.30	0.698473282442748	14.5	1-17,183-167;18-21,155-152	x-x,166-156[BULt]	((((...........(((((((((((((((((&)))))))))))))))))-----------))))	CCGAGAAUGGGAAUUUCGAAAUGGAGUUGAUA&UAUUAAUUCUAUUUUGA-----------UCGG	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN14901_c0_g1_174_TPlot.pdf
TRINITY_DN14901_c0_g1:175	si_a353	TRINITY_DN14901_c0_g1	164	184	175	-24.00	-18.40	0.766666666666667	6.5	1-18,184-167	19-21,166-164[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUUUCGAAAUGGAGUUGAUAU&AUAUUAAUUCUAUUUUGAUCG	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN14901_c0_g1_175_TPlot.pdf
TRINITY_DN14901_c0_g1:178	si_a350	TRINITY_DN14901_c0_g1	167	187	178	-20.30	-19.80	0.975369458128079	6	3-21,185-167	1-2,187-186[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UCGAAAUGGAGUUGAUAUUGG&AAAAUAUUAAUUCUAUUUUGA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN14901_c0_g1_178_TPlot.pdf
TRINITY_DN14901_c0_g1:182	si_a346	TRINITY_DN14901_c0_g1	171	188	182	-25.90	-17.40	0.671814671814672	9	1-5,188-184;9-21,183-171	6-8,x-x[BULq]	(((((((((((((---(((((&)))))...)))))))))))))	AAUGGAGUUGAUA---UUGGG&CCCGAAAAUAUUAAUUCUAUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN14901_c0_g1_182_TPlot.pdf
TRINITY_DN14902_c0_g1:2059	si_s191	TRINITY_DN14902_c0_g1	2045	2068	2059	-26.60	-17.90	0.672932330827068	13	3-4,2066-2065;6-12,2063-2057;13-21,2053-2045	1-2,2068-2067[UP5];5-5,2064-2064[SIL];x-x,2056-2054[BULt]	(((((((((...(((((((.((..&..)).)))))))---)))))))))	UACAUUCCAGAAAGAUGAUGGUGG&UAACGAUUAUUU---UGGAAUGUA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN14902_c0_g1_2059_TPlot.pdf
TRINITY_DN14904_c0_g1:880	si_a313	TRINITY_DN14904_c0_g1	868	890	880	-28.70	-19.80	0.689895470383275	7.5	1-9,890-882;11-12,879-878;13-21,876-868	10-10,881-880[AILt];x-x,877-877[BULt]	(((((((((.((..(((((((((&)))))))))-.))-)))))))))	AAGGUCGUGCGAAAAAAUCCAAG&CUUGGAUUU-AUC-CAUGAUUUU	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN14904_c0_g1_880_TPlot.pdf
TRINITY_DN14907_c0_g1:1429	si_a784	TRINITY_DN14907_c0_g1	1409	1438	1429	-24.70	-17.70	0.716599190283401	20	1-11,1438-1428;12-21,1418-1409	x-x,1427-1419[BULt]	((((((((((.........(((((((((((&)))))))))))---------))))))))))	AAGGUGGAGAUGCUGGUAAAAUAGAAGAGU&ACUCUUCUAUU---------UUUCUAUUUU	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN14907_c0_g1_1429_TPlot.pdf
TRINITY_DN14907_c0_g1:1438	si_a775	TRINITY_DN14907_c0_g1	1427	1450	1438	-27.20	-21.80	0.801470588235294	7	2-8,1449-1443;9-21,1439-1427	1-1,1450-1450[UP5];x-x,1442-1440[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	AAAUAGAAGAGUUAACGAAUCAAG&AUUGAUUC---AACUCUUCUAUUU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN14907_c0_g1_1438_TPlot.pdf
TRINITY_DN14907_c0_g1:1524	si_a325	TRINITY_DN14907_c0_g1	1513	1533	1524	-25.90	-17.20	0.664092664092664	9	1-9,1533-1525;12-20,1522-1514	10-11,1524-1523[SIL];21-21,1513-1513[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UUAAGGGAUAUUGAAGUUAUG&CAUGAUUUUUUUAUUCCUUGU	4	0.999999435725072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN14907_c0_g1_1524_TPlot.pdf
TRINITY_DN14907_c0_g1:1631	si_a786	TRINITY_DN14907_c0_g1	1619	1640	1631	-26.60	-17.50	0.657894736842105	8.5	1-10,1640-1631;11-19,1629-1621	x-x,1630-1630[BULt];20-21,1620-1619[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AUGAGGUAGAAGGAGUAGGAGA&UCUUCUAUUU-UUCUAUUUUCC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN14907_c0_g1_1631_TPlot.pdf
TRINITY_DN14907_c0_g1:1632	si_a785	TRINITY_DN14907_c0_g1	1620	1641	1632	-25.90	-17.70	0.683397683397683	8.5	2-11,1640-1631;12-20,1629-1621	1-1,1641-1641[UP5];x-x,1630-1630[BULt];21-21,1620-1620[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	UGAGGUAGAAGGAGUAGGAGAA&CUCUUCUAUUU-UUCUAUUUUC	3	0.999999999999361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN14907_c0_g1_1632_TPlot.pdf
TRINITY_DN14907_c0_g1:1636	si_s81	TRINITY_DN14907_c0_g1	1626	1646	1636	-28.90	-19.40	0.671280276816609	7.5	1-6,1646-1641;7-11,1639-1635;14-21,1633-1626	x-x,1640-1640[BULt];12-13,1634-1634[AILq]	((((((((.-(((((.((((((&))))))-)))))..))))))))	AGAAGGAGU-AGGAGAAGAAGA&UUUUCU-UUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN14907_c0_g1_1636_TPlot.pdf
TRINITY_DN14907_c0_g1:2041	si_a639	TRINITY_DN14907_c0_g1	2026	2050	2041	-23.60	-16.10	0.682203389830509	7	1-12,2050-2039;14-15,2037-2036;16-21,2031-2026	13-13,2038-2038[SIL];x-x,2035-2032[BULt]	((((((....((.((((((((((((&)))))))))))).))----))))))	GUGUGUCAGAUGGUCAAAAAAAUCG&CGAUUUUUUUGAGUA----AUAUAU	4	0.999993281469884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN14907_c0_g1_2041_TPlot.pdf
TRINITY_DN14907_c0_g1:2043	si_a637	TRINITY_DN14907_c0_g1	2032	2052	2043	-25.80	-17.80	0.689922480620155	6	1-14,2052-2039;16-17,2037-2036	15-15,2038-2038[SIL];18-21,2035-2032[UP3]	....((.((((((((((((((&)))))))))))))).))....	CAGAUGGUCAAAAAAAUCGAU&GUCGAUUUUUUUGAGUAAUAU	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN14907_c0_g1_2043_TPlot.pdf
TRINITY_DN14907_c0_g1:2044	si_a636	TRINITY_DN14907_c0_g1	2033	2053	2044	-26.30	-18.60	0.707224334600761	5.5	1-15,2053-2039;17-18,2037-2036	16-16,2038-2038[SIL];19-21,2035-2033[UP3]	...((.(((((((((((((((&))))))))))))))).))...	AGAUGGUCAAAAAAAUCGAUA&UGUCGAUUUUUUUGAGUAAUA	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN14907_c0_g1_2044_TPlot.pdf
TRINITY_DN14907_c0_g1:2045	si_a635	TRINITY_DN14907_c0_g1	2034	2054	2045	-26.10	-18.60	0.71264367816092	5.5	2-16,2053-2039;18-19,2037-2036	1-1,2054-2054[UP5];17-17,2038-2038[SIL];20-21,2035-2034[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	GAUGGUCAAAAAAAUCGAUAC&AUGUCGAUUUUUUUGAGUAAU	4	0.999693963058563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN14907_c0_g1_2045_TPlot.pdf
TRINITY_DN14907_c0_g1:2048	si_a632	TRINITY_DN14907_c0_g1	2037	2057	2048	-26.10	-17.30	0.662835249042146	9.5	5-19,2053-2039;21-21,2037-2037	1-4,2057-2054[UP5];20-20,2038-2038[SIL]	(.(((((((((((((((....&....))))))))))))))).)	GGUCAAAAAAAUCGAUACGUU&AUUAUGUCGAUUUUUUUGAGU	3	0.999999994217894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN14907_c0_g1_2048_TPlot.pdf
TRINITY_DN14907_c0_g1:2049	si_a631	TRINITY_DN14907_c0_g1	2038	2058	2049	-25.70	-16.90	0.657587548638132	11	6-20,2053-2039	1-5,2058-2054[UP5];21-21,2038-2038[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUCAAAAAAAUCGAUACGUUU&UAUUAUGUCGAUUUUUUUGAG	2	0.999954338611727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN14907_c0_g1_2049_TPlot.pdf
TRINITY_DN1490_c0_g1:1110	si_s647	TRINITY_DN1490_c0_g1	1100	1119	1110	-41.20	-30.10	0.730582524271845	7	1-6,1119-1114;8-13,1112-1107;16-21,1105-1100	7-7,1113-1113[SIL];14-15,1106-1106[AILq]	((((((.-((((((.((((((&)))))).))))))..))))))	CCCCGAG-GUGUUGCGGGCGA&UUGCCCUCGAUACAAUCGGGG	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s647_TRINITY_DN1490_c0_g1_1110_TPlot.pdf
TRINITY_DN1490_c0_g1:1111	si_s646	TRINITY_DN1490_c0_g1	1101	1120	1111	-38.80	-26.60	0.685567010309278	8	2-7,1119-1114;9-14,1112-1107;17-21,1105-1101	1-1,1120-1120[UP5];8-8,1113-1113[SIL];15-16,1106-1106[AILq]	(((((.-((((((.((((((.&.)))))).))))))..)))))	CCCGAG-GUGUUGCGGGCGAG&UUUGCCCUCGAUACAAUCGGG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s646_TRINITY_DN1490_c0_g1_1111_TPlot.pdf
TRINITY_DN1490_c0_g1:1385	si_a330	TRINITY_DN1490_c0_g1	1374	1394	1385	-30.50	-22.80	0.747540983606557	8	2-7,1393-1388;9-19,1386-1376	1-1,1394-1394[UP5];8-8,1387-1387[SIL];20-21,1375-1374[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AUGGGGCGAGGAACGAGAAAU&UUUUUUUAUUCCUUGUCCCGA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN1490_c0_g1_1385_TPlot.pdf
TRINITY_DN1490_c0_g1:1406	si_a784	TRINITY_DN1490_c0_g1	1395	1415	1406	-24.70	-16.60	0.672064777327935	8	3-15,1413-1401;17-20,1399-1396	1-2,1415-1414[UP5];16-16,1400-1400[SIL];21-21,1395-1395[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	CGAAUCGAGAGAUAGGAGAAG&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999778106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1490_c0_g1_1406_TPlot.pdf
TRINITY_DN1490_c0_g1:1410	si_s64	TRINITY_DN1490_c0_g1	1399	1419	1410	-24.10	-15.90	0.659751037344398	10.5	2-5,1418-1415;8-19,1412-1401	1-1,1419-1419[UP5];6-7,1414-1413[SIL];20-21,1400-1399[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	UCGAGAGAUAGGAGAAGCUGC&UUAGCAACUUCUAUUUUUUUU	3	0.999999999997022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN1490_c0_g1_1410_TPlot.pdf
TRINITY_DN1490_c0_g1:1581	si_s622	TRINITY_DN1490_c0_g1	1570	1590	1581	-34.20	-22.40	0.654970760233918	8.5	2-11,1589-1580;14-20,1577-1571	1-1,1590-1590[UP5];12-13,1579-1578[SIL];21-21,1570-1570[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	AUGCGGGACAGUCGCUUGGGC&AUCCAAGCGAUCUUUUCGUAG	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN1490_c0_g1_1581_TPlot.pdf
TRINITY_DN1490_c0_g1:640	si_s68	TRINITY_DN1490_c0_g1	627	649	640	-23.10	-15.40	0.666666666666667	7.5	3-17,647-633;18-21,630-627	1-2,649-648[UP5];x-x,632-631[BULt]	((((..(((((((((((((((..&..)))))))))))))))--))))	AGAGCCGAGAAAAAUGGAAGUCU&CAACUUCUAUUUUUUUU--CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1490_c0_g1_640_TPlot.pdf
TRINITY_DN1491_c0_g1:1276	si_s37	TRINITY_DN1491_c0_g1	1265	1285	1276	-24.40	-18.00	0.737704918032787	8.5	2-10,1284-1276;13-21,1273-1265	1-1,1285-1285[UP5];11-12,1275-1274[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	GUCCAGUUGGAGAAGAUUUGC&CUAAAUCUUUAAUAAUUGGAU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN1491_c0_g1_1276_TPlot.pdf
TRINITY_DN1491_c0_g1:1280	si_s603	TRINITY_DN1491_c0_g1	1269	1289	1280	-27.20	-17.70	0.650735294117647	7.5	2-3,1288-1287;5-19,1285-1271	1-1,1289-1289[UP5];4-4,1286-1286[SIL];20-21,1270-1269[UP3]	..(((((((((((((((.((.&.)).)))))))))))))))..	AGUUGGAGAAGAUUUGCAUGA&CCAAGCGAAUCUUUUUUAAAU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN1491_c0_g1_1280_TPlot.pdf
TRINITY_DN1491_c0_g1:1607	si_a497	TRINITY_DN1491_c0_g1	1597	1617	1607	-32.00	-21.60	0.675	9	2-4,1616-1614;5-10,1612-1607;12-19,1606-1599	1-1,1617-1617[UP5];x-x,1613-1613[BULt];11-11,x-x[BULq];20-21,1598-1597[UP3]	..((((((((-((((((.(((.&.)))-)))))).))))))))..	UUGGAAGACG-AGGACGAACAG&AUGU-CGUUUUUCGUCUUCCUU	4	0.999999999999936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1491_c0_g1_1607_TPlot.pdf
TRINITY_DN1491_c0_g1:1608	si_a496	TRINITY_DN1491_c0_g1	1598	1618	1608	-32.40	-21.60	0.666666666666667	10	3-5,1616-1614;6-11,1612-1607;13-20,1606-1599	1-2,1618-1617[UP5];x-x,1613-1613[BULt];12-12,x-x[BULq];21-21,1598-1598[UP3]	.((((((((-((((((.(((..&..)))-)))))).)))))))).	UGGAAGACG-AGGACGAACAGG&UAUGU-CGUUUUUCGUCUUCCU	4	0.999999999982892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1491_c0_g1_1608_TPlot.pdf
TRINITY_DN1491_c0_g1:1637	si_s78	TRINITY_DN1491_c0_g1	1626	1646	1637	-26.20	-17.10	0.652671755725191	13.5	7-19,1640-1628	1-6,1646-1641[UP5];20-21,1627-1626[UP3]	..(((((((((((((......&......)))))))))))))..	UAAAGGAAGGAAAGACGGACG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1491_c0_g1_1637_TPlot.pdf
TRINITY_DN1491_c0_g1:1638	si_s77	TRINITY_DN1491_c0_g1	1627	1647	1638	-25.50	-17.10	0.670588235294118	14.5	8-20,1640-1628	1-7,1647-1641[UP5];21-21,1627-1627[UP3]	.(((((((((((((.......&.......))))))))))))).	AAAGGAAGGAAAGACGGACGU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1491_c0_g1_1638_TPlot.pdf
TRINITY_DN1491_c0_g1:1639	si_s76	TRINITY_DN1491_c0_g1	1628	1648	1639	-23.60	-17.10	0.724576271186441	15.5	9-21,1640-1628	1-8,1648-1641[UP5]	(((((((((((((........&........)))))))))))))	AAGGAAGGAAAGACGGACGUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1491_c0_g1_1639_TPlot.pdf
TRINITY_DN14920_c0_g1:4412	si_a462	TRINITY_DN14920_c0_g1	4401	4421	4412	-21.20	-14.00	0.660377358490566	7	1-16,4421-4406	17-21,4405-4401[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUAGAAUAUAUUAUGUAUAAU&GUUAUAUAUAAUAUGUAAUUA	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN14920_c0_g1_4412_TPlot.pdf
TRINITY_DN14920_c0_g1:4413	si_a461	TRINITY_DN14920_c0_g1	4402	4422	4413	-21.50	-14.30	0.665116279069767	7.5	2-17,4421-4406	1-1,4422-4422[UP5];18-21,4405-4402[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAGAAUAUAUUAUGUAUAAUG&UGUUAUAUAUAAUAUGUAAUU	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN14920_c0_g1_4413_TPlot.pdf
TRINITY_DN14920_c1_g1:100	si_a788	TRINITY_DN14920_c1_g1	89	109	100	-24.80	-17.80	0.717741935483871	9.5	1-5,109-105;7-7,103-103;10-20,100-90	6-6,104-104[SIL];8-9,102-101[SIL];21-21,89-89[UP3]	.(((((((((((..(.(((((&))))).)..))))))))))).	AUGGAAAGUGGAUUAUUGGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN14920_c1_g1_100_TPlot.pdf
TRINITY_DN14920_c1_g1:123	si_a350	TRINITY_DN14920_c1_g1	112	135	123	-20.30	-13.50	0.665024630541872	14.5	4-9,132-127;10-21,123-112	1-3,135-133[UP5];x-x,126-124[BULt]	((((((((((((...((((((...&...))))))---))))))))))))	UCAAAAUGGAAUUCUUGGUGUAGC&AAAAUAUUA---AUUCUAUUUUGA	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN14920_c1_g1_123_TPlot.pdf
TRINITY_DN14920_c1_g1:61	si_a594	TRINITY_DN14920_c1_g1	49	80	61	-32.30	-21.70	0.671826625386997	21.5	1-8,80-73;9-16,62-55;17-21,53-49	x-x,72-63[BULt];x-x,54-54[BULt]	(((((.((((((((..........((((((((&))))))))----------))))))))-)))))	GUUGCAGAAAAUUCAAAGGUACAAUGUCCUUC&GAAGGACA----------GAAUUUUC-GCAAU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN14920_c1_g1_61_TPlot.pdf
TRINITY_DN14920_c1_g1:62	si_a593	TRINITY_DN14920_c1_g1	50	81	62	-32.90	-21.80	0.662613981762918	21	1-9,81-73;10-17,62-55;18-21,53-50	x-x,72-63[BULt];x-x,54-54[BULt]	((((.((((((((..........(((((((((&)))))))))----------))))))))-))))	UUGCAGAAAAUUCAAAGGUACAAUGUCCUUCU&AGAAGGACA----------GAAUUUUC-GCAA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN14920_c1_g1_62_TPlot.pdf
TRINITY_DN14920_c1_g1:92	si_s72	TRINITY_DN14920_c1_g1	81	101	92	-24.10	-19.90	0.825726141078838	8.5	2-11,100-91;13-20,89-82	1-1,101-101[UP5];12-12,90-90[SIL];21-21,81-81[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UAGGAGAGAUGGAAAGUGGAU&UUCUAUUUUUUUUCUUUCCUU	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN14920_c1_g1_92_TPlot.pdf
TRINITY_DN14920_c1_g1:93	si_s71	TRINITY_DN14920_c1_g1	82	102	93	-25.70	-19.90	0.77431906614786	8.5	3-12,100-91;14-21,89-82	1-2,102-101[UP5];13-13,90-90[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGGAGAGAUGGAAAGUGGAUU&CUUCUAUUUUUUUUCUUUCCU	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN14920_c1_g1_93_TPlot.pdf
TRINITY_DN1492_c0_g1:186	si_a813	TRINITY_DN1492_c0_g1	174	196	186	-32.90	-22.00	0.668693009118541	8	3-9,194-188;10-16,186-180;17-20,178-175	1-2,196-195[UP5];x-x,187-187[BULt];x-x,179-179[BULt];21-21,174-174[UP3]	.((((.(((((((.(((((((..&..)))))))-)))))))-)))).	AUCCUCUUCUUCUCUCUUUGCAA&AAGCGAAGA-AGAAGAA-AGGAA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN1492_c0_g1_186_TPlot.pdf
TRINITY_DN1492_c0_g1:279	si_a142	TRINITY_DN1492_c0_g1	268	288	279	-23.50	-16.50	0.702127659574468	13.5	7-19,282-270	1-6,288-283[UP5];20-21,269-268[UP3]	..(((((((((((((......&......)))))))))))))..	GAAAAACGACAACGAAUUAGA&AAUUAAUCGUUGUUGUUUUAA	3	0.999998905636671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1492_c0_g1_279_TPlot.pdf
TRINITY_DN14932_c0_g1:188	si_a303	TRINITY_DN14932_c0_g1	177	197	188	-28.40	-19.60	0.690140845070423	11	5-13,193-185;15-19,183-179	1-4,197-194[UP5];14-14,184-184[SIL];20-21,178-177[UP3]	..(((((.(((((((((....&....))))))))).)))))..	GAAAAUCGAAGCGGAUCGUAG&AAAAGAUUCGCUUGGAUUUAU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN14932_c0_g1_188_TPlot.pdf
TRINITY_DN14932_c0_g1:191	si_a300	TRINITY_DN14932_c0_g1	180	200	191	-28.20	-18.40	0.652482269503546	15	8-16,193-185;18-21,183-180	1-7,200-194[UP5];17-17,184-184[SIL]	((((.(((((((((.......&.......))))))))).))))	AAUCGAAGCGGAUCGUAGAUU&UAAAAAAGAUUCGCUUGGAUU	4	0.999950241653235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN14932_c0_g1_191_TPlot.pdf
TRINITY_DN14937_c0_g1:1267	si_s886	TRINITY_DN14937_c0_g1	1265	1276	1267	-26.50	-17.40	0.656603773584906	1	11-21,1275-1265	10-10,1276-1276[SIL]	(((((((((((.&.)))))))))))	GAGAAAGCCUGC&UAAAAAUAAAUA	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN14937_c0_g1_1267_TPlot.pdf
TRINITY_DN1493_c0_g2:1577	si_a83	TRINITY_DN1493_c0_g2	1561	1586	1577	-24.50	-17.30	0.706122448979592	11	4-17,1583-1570;18-21,1564-1561	1-3,1586-1584[UP5];x-x,1569-1565[BULt]	((((.....((((((((((((((...&...))))))))))))))-----))))	ACCUGCGGCUUUCUUGAUAAUGACCA&UUUUCAUUAUUAAGAAA-----AGGU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN1493_c0_g2_1577_TPlot.pdf
TRINITY_DN1493_c0_g2:1578	si_a82	TRINITY_DN1493_c0_g2	1562	1587	1578	-23.70	-16.00	0.675105485232067	13	5-18,1583-1570;19-21,1564-1562	1-4,1587-1584[UP5];x-x,1569-1565[BULt]	(((.....((((((((((((((....&....))))))))))))))-----)))	CCUGCGGCUUUCUUGAUAAUGACCAG&UUUUUCAUUAUUAAGAAA-----AGG	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN1493_c0_g2_1578_TPlot.pdf
TRINITY_DN1493_c0_g2:1579	si_a81	TRINITY_DN1493_c0_g2	1568	1588	1579	-23.00	-16.70	0.726086956521739	7.5	1-3,1588-1586;6-19,1583-1570	4-5,1585-1584[SIL];20-21,1569-1568[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	GCUUUCUUGAUAAUGACCAGC&GUUUUUCAUUAUUAAGAAAAG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN1493_c0_g2_1579_TPlot.pdf
TRINITY_DN1493_c0_g2:1580	si_a80	TRINITY_DN1493_c0_g2	1569	1589	1580	-22.10	-16.80	0.760180995475113	7.5	2-4,1588-1586;7-20,1583-1570	1-1,1589-1589[UP5];5-6,1585-1584[SIL];21-21,1569-1569[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	CUUUCUUGAUAAUGACCAGCG&UGUUUUUCAUUAUUAAGAAAA	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1493_c0_g2_1580_TPlot.pdf
TRINITY_DN1493_c0_g2:1581	si_a79	TRINITY_DN1493_c0_g2	1570	1590	1581	-22.20	-17.00	0.765765765765766	7	1-5,1590-1586;8-21,1583-1570	6-7,1585-1584[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UUUCUUGAUAAUGACCAGCGG&UUGUUUUUCAUUAUUAAGAAA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1493_c0_g2_1581_TPlot.pdf
TRINITY_DN1493_c0_g2:1582	si_a78	TRINITY_DN1493_c0_g2	1571	1591	1582	-22.30	-16.10	0.721973094170404	8.5	2-6,1590-1586;9-21,1583-1571	1-1,1591-1591[UP5];7-8,1585-1584[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	UUCUUGAUAAUGACCAGCGGC&AUUGUUUUUCAUUAUUAAGAA	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN1493_c0_g2_1582_TPlot.pdf
TRINITY_DN1493_c0_g2:396	si_s742	TRINITY_DN1493_c0_g2	385	405	396	-31.40	-21.80	0.694267515923567	9	1-7,405-399;10-18,396-388	8-9,398-397[SIL];19-21,387-385[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	GAAGAGGUUAGUGCAUUCACC&GGUGAAUAGAUUGACCUUAAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN1493_c0_g2_396_TPlot.pdf
TRINITY_DN1493_c0_g2:470	si_a329	TRINITY_DN1493_c0_g2	459	479	470	-29.60	-19.80	0.668918918918919	7	2-14,478-466;16-18,465-463;19-21,461-459	1-1,479-479[UP5];15-15,x-x[BULq];x-x,462-462[BULt]	(((.(((-(((((((((((((.&.))))))))))))).)))-)))	CGGCGGC-GGGAAUAAAGAGGG&AUUUUUUUAUUCCUUGUC-CCG	3	0.999999675171817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1493_c0_g2_470_TPlot.pdf
TRINITY_DN14953_c0_g1:3404	si_s46	TRINITY_DN14953_c0_g1	3393	3411	3404	-25.00	-19.50	0.78	5.5	1-5,3411-3407;8-21,3406-3393	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	UAGCUUGAAAUCCA--UGUUA&UAAUAAUUGGAUUUCAAGUUA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN14953_c0_g1_3404_TPlot.pdf
TRINITY_DN1495_c0_g1:1289	si_s79	TRINITY_DN1495_c0_g1	1275	1298	1289	-26.20	-17.40	0.66412213740458	7	2-13,1297-1286;16-17,1283-1282;18-21,1278-1275	1-1,1298-1298[UP5];14-15,1285-1284[SIL];x-x,1281-1279[BULt]	((((...((..((((((((((((.&.))))))))))))..))---))))	AAGAUAAAGUUAGGAAAGAAGAAG&UUUUUUCUUUCCUUUCU---UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1495_c0_g1_1289_TPlot.pdf
TRINITY_DN1495_c0_g1:1290	si_s78	TRINITY_DN1495_c0_g1	1279	1299	1290	-26.20	-18.80	0.717557251908397	6	1-14,1299-1286;17-19,1283-1281	15-16,1285-1284[SIL];20-21,1280-1279[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UAAAGUUAGGAAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1495_c0_g1_1290_TPlot.pdf
TRINITY_DN1495_c0_g1:1291	si_s77	TRINITY_DN1495_c0_g1	1280	1300	1291	-25.50	-19.70	0.772549019607843	5	1-15,1300-1286;18-20,1283-1281	16-17,1285-1284[SIL];21-21,1280-1280[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	AAAGUUAGGAAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	0.999999993062352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1495_c0_g1_1291_TPlot.pdf
TRINITY_DN1495_c0_g1:1292	si_s76	TRINITY_DN1495_c0_g1	1281	1301	1292	-23.60	-19.70	0.834745762711864	5	2-16,1300-1286;19-21,1283-1281	1-1,1301-1301[UP5];17-18,1285-1284[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	AAGUUAGGAAAGAAGAAGAAG&AUUUUUUUUCUUUCCUUUCUU	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1495_c0_g1_1292_TPlot.pdf
TRINITY_DN1495_c0_g1:1293	si_s75	TRINITY_DN1495_c0_g1	1282	1302	1293	-24.00	-18.80	0.783333333333333	7	3-17,1300-1286;20-21,1283-1282	1-2,1302-1301[UP5];18-19,1285-1284[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	AGUUAGGAAAGAAGAAGAAGU&UAUUUUUUUUCUUUCCUUUCU	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1495_c0_g1_1293_TPlot.pdf
TRINITY_DN1495_c0_g1:1294	si_s74	TRINITY_DN1495_c0_g1	1283	1303	1294	-25.00	-17.50	0.7	9	4-18,1300-1286;21-21,1283-1283	1-3,1303-1301[UP5];19-20,1285-1284[SIL]	(..(((((((((((((((...&...)))))))))))))))..)	GUUAGGAAAGAAGAAGAAGUC&CUAUUUUUUUUCUUUCCUUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1495_c0_g1_1294_TPlot.pdf
TRINITY_DN1495_c0_g1:1295	si_s73	TRINITY_DN1495_c0_g1	1284	1304	1295	-24.00	-16.80	0.7	11	5-19,1300-1286	1-4,1304-1301[UP5];20-21,1285-1284[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUAGGAAAGAAGAAGAAGUCG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1495_c0_g1_1295_TPlot.pdf
TRINITY_DN1495_c0_g1:1296	si_s72	TRINITY_DN1495_c0_g1	1285	1306	1296	-24.10	-17.00	0.705394190871369	10	2-3,1305-1304;6-20,1300-1286	1-1,1306-1306[UP5];4-5,1303-1301[AILt];21-21,1285-1285[UP3]	.(((((((((((((((...((.&.))-..))))))))))))))).	UAGGAAAGAAGAAGAAGUCGAU&UUC-UAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1495_c0_g1_1296_TPlot.pdf
TRINITY_DN1495_c0_g1:1297	si_s71	TRINITY_DN1495_c0_g1	1286	1307	1297	-25.70	-17.00	0.66147859922179	11	3-4,1305-1304;7-21,1300-1286	1-2,1307-1306[UP5];5-6,1303-1301[AILt]	(((((((((((((((...((..&..))-..)))))))))))))))	AGGAAAGAAGAAGAAGUCGAUC&CUUC-UAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1495_c0_g1_1297_TPlot.pdf
TRINITY_DN1495_c0_g1:1624	si_a665	TRINITY_DN1495_c0_g1	1613	1633	1624	-29.60	-19.70	0.66554054054054	11.5	6-19,1628-1615	1-5,1633-1629[UP5];20-21,1614-1613[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACUGAGGAAUCAAUAGACUCA&AAUGCCUAUUGAUUCCUUAUU	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN1495_c0_g1_1624_TPlot.pdf
TRINITY_DN1495_c0_g1:2138	si_a787	TRINITY_DN1495_c0_g1	2128	2150	2138	-26.30	-17.60	0.669201520912548	10	1-5,2150-2146;6-13,2142-2135;15-21,2134-2128	x-x,2145-2143[BULt];14-14,x-x[BULq]	(((((((-((((((((...(((((&)))))---)))))))).)))))))	UGGAGAG-AGAAAGAUACUGGAAG&CUUCU---AUUUUUCUAUUUUCCA	3	0.999999999999883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1495_c0_g1_2138_TPlot.pdf
TRINITY_DN1495_c0_g1:2139	si_s71	TRINITY_DN1495_c0_g1	2128	2150	2139	-25.70	-19.80	0.770428015564202	10	1-6,2150-2145;8-20,2141-2129	7-7,2144-2142[AILt];21-21,2128-2128[UP3]	.(((((((((((((...((((((&))))))--.))))))))))))).	UGGAGAGAGAAAGAUACUGGAAG&CUUCUA--UUUUUUUUCUUUCCU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1495_c0_g1_2139_TPlot.pdf
TRINITY_DN1495_c0_g1:2970	si_s93	TRINITY_DN1495_c0_g1	2958	2979	2970	-34.80	-27.20	0.781609195402299	8	1-11,2979-2969;13-19,2966-2960	12-12,2968-2967[AILt];20-21,2959-2958[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	CCUCCGAAGAGGAAGAGGAGGA&UCUUCUUCUUC-GCUUCGGAUU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1495_c0_g1_2970_TPlot.pdf
TRINITY_DN1495_c0_g1:2974	si_s83	TRINITY_DN1495_c0_g1	2963	2983	2974	-30.90	-24.30	0.786407766990291	6.5	1-7,2983-2977;9-21,2975-2963	8-8,2976-2976[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAAGAGGAAGAGGAGGAGGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1495_c0_g1_2974_TPlot.pdf
TRINITY_DN1495_c0_g1:3611	si_s899	TRINITY_DN1495_c0_g1	3601	3620	3611	-28.30	-18.80	0.664310954063604	9	1-11,3620-3610;14-17,3608-3605	12-13,3609-3609[AILq];18-21,3604-3601[UP3]	....((((.-(((((((((((&)))))))))))..))))....	ACCCGAAAA-GGAGAGAAGGC&GCUUUCUCUUCAAUUUCAAUU	3	0.999999998417255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN1495_c0_g1_3611_TPlot.pdf
TRINITY_DN1495_c0_g1:3885	si_s96	TRINITY_DN1495_c0_g1	3872	3894	3885	-37.20	-25.40	0.682795698924731	6.5	1-12,3894-3883;13-13,3881-3881;15-18,3879-3876;19-20,3874-3873	x-x,3882-3882[BULt];14-14,3880-3880[SIL];x-x,3875-3875[BULt];21-21,3872-3872[UP3]	.((.((((.(.((((((((((((&))))))))))))-).))))-)).	CCCGAGUCGGAAAGCGAGGAAGA&UCUUCUUCGCUU-CGGAUU-GGA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN1495_c0_g1_3885_TPlot.pdf
TRINITY_DN1495_c0_g1:3894	si_s87	TRINITY_DN1495_c0_g1	3883	3913	3894	-32.90	-22.10	0.671732522796353	21.5	1-6,3913-3908;7-8,3906-3905;9-21,3895-3883	x-x,3907-3907[BULt];x-x,3904-3896[BULt]	(((((((((((((.........((.((((((&))))))-))---------)))))))))))))	AAGCGAGGAAGAAACGGCAUCUGAUGAGGAA&UUCCUU-UC---------UUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1495_c0_g1_3894_TPlot.pdf
TRINITY_DN1495_c0_g1:3895	si_s86	TRINITY_DN1495_c0_g1	3884	3914	3895	-32.90	-22.10	0.671732522796353	21.5	1-7,3914-3908;8-9,3906-3905;10-21,3895-3884	x-x,3907-3907[BULt];x-x,3904-3896[BULt]	((((((((((((.........((.(((((((&)))))))-))---------))))))))))))	AGCGAGGAAGAAACGGCAUCUGAUGAGGAAA&UUUCCUU-UC---------UUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1495_c0_g1_3895_TPlot.pdf
TRINITY_DN1495_c0_g1:4142	si_a498	TRINITY_DN1495_c0_g1	4131	4151	4142	-33.50	-23.26	0.694328358208955	11	1-4,4151-4148;9-20,4143-4132	5-8,4147-4144[SIL];21-21,4131-4131[UP3]	.((((((((((((....((((&))))....)))))))))))).	UGAGGGAGACGAGUUCGGACA&UGUCGUUUUUCGUCUUCCUUG	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1495_c0_g1_4142_TPlot.pdf
TRINITY_DN1495_c0_g1:4143	si_a497	TRINITY_DN1495_c0_g1	4132	4152	4143	-32.00	-22.96	0.7175	11	2-5,4151-4148;10-21,4143-4132	1-1,4152-4152[UP5];6-9,4147-4144[SIL]	((((((((((((....((((.&.))))....))))))))))))	GAGGGAGACGAGUUCGGACAA&AUGUCGUUUUUCGUCUUCCUU	3	0.999970930827431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1495_c0_g1_4143_TPlot.pdf
TRINITY_DN1495_c4_g1:284	si_s39	TRINITY_DN1495_c4_g1	273	293	284	-22.30	-14.90	0.668161434977579	10	5-6,289-288;8-21,286-273	1-4,293-290[UP5];7-7,287-287[SIL]	((((((((((((((.((....&....)).))))))))))))))	AAAUCCAAUUAUUGCAGUACC&AAAUCUUUAAUAAUUGGAUUU	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1495_c4_g1_284_TPlot.pdf
TRINITY_DN1496_c0_g1:2474	si_s485	TRINITY_DN1496_c0_g1	2463	2483	2474	-18.10	-12.20	0.674033149171271	11	1-14,2483-2470	15-21,2469-2463[UP3]	.......((((((((((((((&)))))))))))))).......	GUUUUUAUUAAAUGAGUGUGG&CUAUAUUUAUUUAAAUAUAAA	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1496_c0_g1_2474_TPlot.pdf
TRINITY_DN1496_c0_g1:3709	si_s832	TRINITY_DN1496_c0_g1	3698	3718	3709	-25.40	-17.30	0.681102362204724	7	2-16,3717-3703	1-1,3718-3718[UP5];17-21,3702-3698[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CAGCAUUCAGAUUGUUUUUCG&UGAAAAACAAUUUGAAAGAAG	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s832_TRINITY_DN1496_c0_g1_3709_TPlot.pdf
TRINITY_DN1496_c0_g1:3710	si_s831	TRINITY_DN1496_c0_g1	3699	3719	3710	-24.00	-18.90	0.7875	5.5	1-17,3719-3703	18-21,3702-3699[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGCAUUCAGAUUGUUUUUCGU&AUGAAAAACAAUUUGAAAGAA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s831_TRINITY_DN1496_c0_g1_3710_TPlot.pdf
TRINITY_DN1496_c0_g1:3712	si_s829	TRINITY_DN1496_c0_g1	3701	3721	3712	-23.30	-19.10	0.819742489270386	6.5	3-19,3719-3703	1-2,3721-3720[UP5];20-21,3702-3701[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CAUUCAGAUUGUUUUUCGUAC&UAAUGAAAAACAAUUUGAAAG	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s829_TRINITY_DN1496_c0_g1_3712_TPlot.pdf
TRINITY_DN1496_c0_g1:6397	si_a464	TRINITY_DN1496_c0_g1	6386	6406	6397	-19.60	-13.10	0.668367346938775	7.5	4-20,6403-6387	1-3,6406-6404[UP5];21-21,6386-6386[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAUAAUUAUGUAUUAUAUCUA&UAUAUAUAAUAUGUAAUUAUU	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN1496_c0_g1_6397_TPlot.pdf
TRINITY_DN1496_c0_g1:6398	si_a463	TRINITY_DN1496_c0_g1	6387	6407	6398	-19.70	-13.20	0.67005076142132	3.5	1-3,6407-6405;5-21,6403-6387	4-4,6404-6404[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	AUAAUUAUGUAUUAUAUCUAG&UUAUAUAUAAUAUGUAAUUAU	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1496_c0_g1_6398_TPlot.pdf
TRINITY_DN14970_c0_g1:1677	si_a75	TRINITY_DN14970_c0_g1	1666	1686	1677	-21.30	-14.40	0.676056338028169	10.5	3-16,1684-1671	1-2,1686-1685[UP5];17-21,1670-1666[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUCGGAUGAAAAGCAGUUCG&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN14970_c0_g1_1677_TPlot.pdf
TRINITY_DN1497_c0_g2:4196	si_s78	TRINITY_DN1497_c0_g2	4183	4205	4196	-26.20	-19.30	0.736641221374046	4.5	1-15,4205-4191;16-17,4188-4187;19-21,4185-4183	x-x,4190-4189[BULt];18-18,4186-4186[SIL]	(((.((..(((((((((((((((&)))))))))))))))--)).)))	AGAUGAUGGAGGAAAGAAGAAAA&UUUUUUUCUUUCCUU--UCUUCU	3	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1497_c0_g2_4196_TPlot.pdf
TRINITY_DN14983_c0_g1:826	si_a327	TRINITY_DN14983_c0_g1	815	836	826	-28.40	-18.52	0.652112676056338	12.5	1-4,836-833;8-20,828-816	5-7,832-829[AILt];21-21,815-815[UP3]	.(((((((((((((....((((&))))-...))))))))))))).	UGGCGGGGAAUGAAUACUGUCA&UGAU-UUUUUUAUUCCUUGUCC	4	0.999999999870653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN14983_c0_g1_826_TPlot.pdf
TRINITY_DN14986_c0_g1:1152	si_s579	TRINITY_DN14986_c0_g1	1141	1162	1152	-26.70	-17.70	0.662921348314607	8	1-8,1162-1155;10-19,1152-1143	9-9,1154-1153[AILt];20-21,1142-1141[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	GUUCUAUGGUUUCAUUUGUUCC&GGAAUAAA-AAAAUCAUGGAUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN14986_c0_g1_1152_TPlot.pdf
TRINITY_DN14986_c0_g1:1153	si_s578	TRINITY_DN14986_c0_g1	1142	1163	1153	-27.00	-19.10	0.707407407407407	7	1-9,1163-1155;11-20,1152-1143	10-10,1154-1153[AILt];21-21,1142-1142[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	UUCUAUGGUUUCAUUUGUUCCU&AGGAAUAAA-AAAAUCAUGGAU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s578_TRINITY_DN14986_c0_g1_1153_TPlot.pdf
TRINITY_DN14986_c0_g1:1298	si_a135	TRINITY_DN14986_c0_g1	1287	1307	1298	-25.70	-17.60	0.684824902723736	7	1-15,1307-1293	16-21,1292-1287[UP3]	......(((((((((((((((&)))))))))))))))......	CGGAAAGAUUAAUUGCUAUUG&CAAUAGUAAUUAAUCGUUGUU	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN14986_c0_g1_1298_TPlot.pdf
TRINITY_DN14986_c0_g1:1299	si_a134	TRINITY_DN14986_c0_g1	1288	1308	1299	-28.20	-19.40	0.687943262411348	6.5	1-16,1308-1293	17-21,1292-1288[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGAAAGAUUAAUUGCUAUUGU&GCAAUAGUAAUUAAUCGUUGU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN14986_c0_g1_1299_TPlot.pdf
TRINITY_DN14986_c0_g1:1300	si_a133	TRINITY_DN14986_c0_g1	1289	1309	1300	-28.10	-20.30	0.722419928825623	6	1-17,1309-1293	18-21,1292-1289[UP3]	....(((((((((((((((((&)))))))))))))))))....	GAAAGAUUAAUUGCUAUUGUU&AGCAAUAGUAAUUAAUCGUUG	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN14986_c0_g1_1300_TPlot.pdf
TRINITY_DN14986_c0_g1:1304	si_a129	TRINITY_DN14986_c0_g1	1293	1313	1304	-25.20	-20.40	0.80952380952381	7.5	4-21,1310-1293	1-3,1313-1311[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAUUAAUUGCUAUUGUUGAAC&UUAUAGCAAUAGUAAUUAAUC	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN14986_c0_g1_1304_TPlot.pdf
TRINITY_DN1498_c0_g1:912	si_s887	TRINITY_DN1498_c0_g1	901	921	912	-26.80	-18.40	0.686567164179104	13	6-19,916-903	1-5,921-917[UP5];20-21,902-901[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAGGGAAGCCUGUUUACUGGC&AAAAAUAAAUAGGCUUUCUCU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN1498_c0_g1_912_TPlot.pdf
TRINITY_DN1498_c0_g1:914	si_s885	TRINITY_DN1498_c0_g1	903	923	914	-26.20	-18.20	0.694656488549618	15	8-21,916-903	1-7,923-917[UP5]	((((((((((((((.......&.......))))))))))))))	GGGAAGCCUGUUUACUGGCUU&CUAAAAAUAAAUAGGCUUUCU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s885_TRINITY_DN1498_c0_g1_914_TPlot.pdf
TRINITY_DN1499_c0_g1:269	si_a494	TRINITY_DN1499_c0_g1	258	278	269	-29.50	-19.20	0.650847457627119	15	6-10,273-269;12-21,267-258	1-5,278-274[UP5];11-11,268-268[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GGAGGCGAAGCGCGAUGGGCG&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1499_c0_g1_269_TPlot.pdf
TRINITY_DN149_c0_g1:2541	si_a556	TRINITY_DN149_c0_g1	2524	2550	2541	-33.40	-22.60	0.676646706586826	11.5	2-13,2549-2538;14-20,2531-2525	1-1,2550-2550[UP5];x-x,2537-2532[BULt];21-21,2524-2524[UP3]	.(((((((......((((((((((((.&.))))))))))))------))))))).	CUUACGGGCGUUAAGAGGUAGAGAGAC&AUUUCUUUAUCUC------CCCGUGAA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN149_c0_g1_2541_TPlot.pdf
TRINITY_DN14_c0_g1:2190	si_s489	TRINITY_DN14_c0_g1	2179	2199	2190	-17.90	-12.30	0.687150837988827	6	1-7,2199-2193;9-18,2191-2182	8-8,2192-2192[SIL];19-21,2181-2179[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UGAGUUUAUAUUUCAGUAAAU&AUUUAUUUAAAUAUAAACAAA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN14_c0_g1_2190_TPlot.pdf
TRINITY_DN14_c0_g1:2191	si_s488	TRINITY_DN14_c0_g1	2180	2200	2191	-18.30	-12.30	0.672131147540984	6	2-8,2199-2193;10-19,2191-2182	1-1,2200-2200[UP5];9-9,2192-2192[SIL];20-21,2181-2180[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	GAGUUUAUAUUUCAGUAAAUC&UAUUUAUUUAAAUAUAAACAA	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN14_c0_g1_2191_TPlot.pdf
TRINITY_DN14_c0_g1:2908	si_s819	TRINITY_DN14_c0_g1	2897	2917	2908	-23.00	-15.20	0.660869565217391	10.5	2-16,2916-2902	1-1,2917-2917[UP5];17-21,2901-2897[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUAUGUCGUUGUUGAGAGAGU&CUUUUCUUAAUAAUGAAAAAC	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN14_c0_g1_2908_TPlot.pdf
TRINITY_DN14_c0_g1:303	si_s130	TRINITY_DN14_c0_g1	292	312	303	-28.70	-19.00	0.662020905923345	10.5	1-10,312-303;13-17,300-296	11-12,302-301[SIL];18-21,295-292[UP3]	....(((((..((((((((((&))))))))))..)))))....	CGGAGGUUGUGUUAGCUCUUC&GAAGAGUUGAAUCAAUCAAAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN14_c0_g1_303_TPlot.pdf
TRINITY_DN14_c0_g1:304	si_s129	TRINITY_DN14_c0_g1	293	313	304	-29.40	-20.10	0.683673469387755	8.5	1-11,313-303;14-18,300-296	12-13,302-301[SIL];19-21,295-293[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	GGAGGUUGUGUUAGCUCUUCU&AGAAGAGUUGAAUCAAUCAAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s129_TRINITY_DN14_c0_g1_304_TPlot.pdf
TRINITY_DN14_c0_g1:305	si_s128	TRINITY_DN14_c0_g1	294	314	305	-29.80	-20.10	0.674496644295302	7.5	2-12,313-303;15-19,300-296	1-1,314-314[UP5];13-14,302-301[SIL];20-21,295-294[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	GAGGUUGUGUUAGCUCUUCUU&UAGAAGAGUUGAAUCAAUCAA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s128_TRINITY_DN14_c0_g1_305_TPlot.pdf
TRINITY_DN14_c0_g1:306	si_s127	TRINITY_DN14_c0_g1	295	315	306	-29.90	-20.10	0.672240802675585	8.5	3-13,313-303;16-20,300-296	1-2,315-314[UP5];14-15,302-301[SIL];21-21,295-295[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	AGGUUGUGUUAGCUCUUCUUU&AUAGAAGAGUUGAAUCAAUCA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s127_TRINITY_DN14_c0_g1_306_TPlot.pdf
TRINITY_DN14_c0_g1:307	si_s126	TRINITY_DN14_c0_g1	296	316	307	-29.20	-19.60	0.671232876712329	9	4-14,313-303;17-21,300-296	1-3,316-314[UP5];15-16,302-301[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	GGUUGUGUUAGCUCUUCUUUC&AAUAGAAGAGUUGAAUCAAUC	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN14_c0_g1_307_TPlot.pdf
TRINITY_DN14_c0_g1:3399	si_s547	TRINITY_DN14_c0_g1	3388	3410	3399	-24.00	-16.20	0.675	9.5	1-6,3410-3405;7-17,3402-3392	x-x,3404-3403[BULt];18-21,3391-3388[UP3]	....(((((((((((..((((((&))))))--)))))))))))....	GGGAUAGUUCUAUUUGCUGGUCG&CGAUCA--AAAUAGAAUUAAUAU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN14_c0_g1_3399_TPlot.pdf
TRINITY_DN14_c0_g1:3649	si_s312	TRINITY_DN14_c0_g1	3638	3658	3649	-29.00	-20.20	0.696551724137931	13	6-12,3653-3647;15-20,3644-3639	1-5,3658-3654[UP5];13-14,3646-3645[SIL];21-21,3638-3638[UP3]	.((((((..(((((((.....&.....)))))))..)))))).	GGACGAGUUGGACAGAUUAAA&AAAAUUCUGUCCUUCUUGUUA	3	0.999976733936909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN14_c0_g1_3649_TPlot.pdf
TRINITY_DN14_c0_g1:921	si_s1	TRINITY_DN14_c0_g1	910	930	921	-18.70	-12.60	0.67379679144385	9	1-14,930-917	15-21,916-910[UP3]	.......((((((((((((((&)))))))))))))).......	CACUCGAAAGUAAUGUAGAAA&UUUUUAUAUUACUUAUUAUUA	3	0.999999994981852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN14_c0_g1_921_TPlot.pdf
TRINITY_DN15000_c1_g1:489	si_s72	TRINITY_DN15000_c1_g1	478	497	489	-24.10	-16.10	0.66804979253112	6	1-4,497-494;6-15,493-484;17-21,482-478	5-5,x-x[BULq];16-16,483-483[SIL]	(((((.((((((((((-((((&)))).)))))))))).)))))	AAGGGUGGAAAAGAAG-AGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN15000_c1_g1_489_TPlot.pdf
TRINITY_DN15000_c1_g1:889	si_s87	TRINITY_DN15000_c1_g1	878	905	889	-32.90	-21.90	0.665653495440729	16.5	2-4,904-902;5-9,900-896;10-21,889-878	1-1,905-905[UP5];x-x,901-901[BULt];x-x,895-890[BULt]	((((((((((((......(((((.(((.&.)))-)))))------))))))))))))	AAGCGAGGAAGAUUGUCAAGAAACGGGU&UUCC-UUUCU------UCUUCUUCGCUU	2	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN15000_c1_g1_889_TPlot.pdf
TRINITY_DN15002_c0_g1:135	si_a80	TRINITY_DN15002_c0_g1	124	144	135	-22.10	-14.40	0.65158371040724	6.5	2-14,143-131;17-19,128-126	1-1,144-144[UP5];15-16,130-129[SIL];20-21,125-124[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	AAUUCACAGUGAUGAAAAACU&UGUUUUUCAUUAUUAAGAAAA	4	0.99999995898401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN15002_c0_g1_135_TPlot.pdf
TRINITY_DN15005_c1_g1:513	si_s873	TRINITY_DN15005_c1_g1	502	522	513	-30.30	-20.80	0.686468646864686	10.5	1-3,522-520;5-14,518-509	4-4,519-519[SIL];15-21,508-502[UP3]	.......((((((((((.(((&))).)))))))))).......	UUCUAGGGGUUCUAGGAGCGG&CCGGUCUUAGAACUAAAAAUA	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s873_TRINITY_DN15005_c1_g1_513_TPlot.pdf
TRINITY_DN15005_c1_g1:514	si_s872	TRINITY_DN15005_c1_g1	503	523	514	-30.70	-20.80	0.677524429967427	10.5	2-4,522-520;6-15,518-509	1-1,523-523[UP5];5-5,519-519[SIL];16-21,508-503[UP3]	......((((((((((.(((.&.))).))))))))))......	UCUAGGGGUUCUAGGAGCGGA&ACCGGUCUUAGAACUAAAAAU	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN15005_c1_g1_514_TPlot.pdf
TRINITY_DN15005_c1_g1:515	si_s871	TRINITY_DN15005_c1_g1	504	524	515	-31.00	-20.80	0.670967741935484	11.5	3-5,522-520;7-16,518-509	1-2,524-523[UP5];6-6,519-519[SIL];17-21,508-504[UP3]	.....((((((((((.(((..&..))).)))))))))).....	CUAGGGGUUCUAGGAGCGGAC&UACCGGUCUUAGAACUAAAAA	0	0.0449841357901888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN15005_c1_g1_515_TPlot.pdf
TRINITY_DN15005_c1_g1:517	si_s869	TRINITY_DN15005_c1_g1	506	528	517	-35.10	-23.90	0.680911680911681	11.5	1-4,528-525;5-7,522-520;9-18,518-509	x-x,524-523[BULt];8-8,519-519[SIL];19-21,508-506[UP3]	...((((((((((.(((..((((&))))--))).))))))))))...	AGGGGUUCUAGGAGCGGACUGGG&CCUA--CCGGUCUUAGAACUAAA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s869_TRINITY_DN15005_c1_g1_517_TPlot.pdf
TRINITY_DN15005_c1_g1:518	si_s868	TRINITY_DN15005_c1_g1	507	529	518	-35.90	-23.90	0.665738161559889	11.5	2-5,528-525;6-8,522-520;10-19,518-509	1-1,529-529[UP5];x-x,524-523[BULt];9-9,519-519[SIL];20-21,508-507[UP3]	..((((((((((.(((..((((.&.))))--))).))))))))))..	GGGGUUCUAGGAGCGGACUGGGA&ACCUA--CCGGUCUUAGAACUAA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN15005_c1_g1_518_TPlot.pdf
TRINITY_DN15005_c1_g1:529	si_a21	TRINITY_DN15005_c1_g1	518	541	529	-24.30	-16.50	0.679012345679012	14	1-4,541-538;5-18,534-521	x-x,537-535[BULt];19-21,520-518[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	AGCGGACUGGGAAUGAAAGCUGGG&CCUA---UUUAUUUUUAGUUCUAA	2	0.997549565409419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN15005_c1_g1_529_TPlot.pdf
TRINITY_DN15005_c1_g1:532	si_a327	TRINITY_DN15005_c1_g1	521	541	532	-28.40	-18.50	0.651408450704225	12.5	6-16,536-526;18-21,524-521	1-5,541-537[UP5];17-17,525-525[SIL]	((((.(((((((((((.....&.....))))))))))).))))	GGACUGGGAAUGAAAGCUGGG&UGAUUUUUUUAUUCCUUGUCC	3	0.999999999966196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN15005_c1_g1_532_TPlot.pdf
TRINITY_DN1500_c0_g1:122	si_a448	TRINITY_DN1500_c0_g1	111	131	122	-25.50	-16.70	0.654901960784314	8.5	1-11,131-121;13-17,119-115	12-12,120-120[SIL];18-21,114-111[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CAGAGACAAAGAUUAUCUCGU&AUGAGAUAAUUGUUGUUAUAU	3	0.999988999145849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN1500_c0_g1_122_TPlot.pdf
TRINITY_DN1500_c0_g1:123	si_a447	TRINITY_DN1500_c0_g1	112	132	123	-25.70	-17.20	0.669260700389105	7	1-12,132-121;14-18,119-115	13-13,120-120[SIL];19-21,114-112[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AGAGACAAAGAUUAUCUCGUG&UAUGAGAUAAUUGUUGUUAUA	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN1500_c0_g1_123_TPlot.pdf
TRINITY_DN1500_c0_g1:124	si_a446	TRINITY_DN1500_c0_g1	113	133	124	-25.50	-17.20	0.674509803921569	7	2-13,132-121;15-19,119-115	1-1,133-133[UP5];14-14,120-120[SIL];20-21,114-113[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	GAGACAAAGAUUAUCUCGUGA&AUAUGAGAUAAUUGUUGUUAU	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN1500_c0_g1_124_TPlot.pdf
TRINITY_DN15012_c0_g1:2327	si_a442	TRINITY_DN15012_c0_g1	2316	2336	2327	-29.30	-23.90	0.815699658703072	5	1-3,2336-2334;6-21,2331-2316	4-5,2333-2332[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	CAGCAAUUGUCUCAUACGCAA&UUGGAUAUGAGAUAAUUGUUG	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN15012_c0_g1_2327_TPlot.pdf
TRINITY_DN15012_c0_g1:6587	si_s89	TRINITY_DN15012_c0_g1	6571	6596	6587	-35.30	-24.00	0.679886685552408	10	3-15,6594-6582;16-21,6576-6571	1-2,6596-6595[UP5];x-x,6581-6577[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	CGAAGCCCCAUGAAGAAGAAGGAGCU&CCUUUCUUCUUCUUC-----GCUUCG	4	0.999999999973058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN15012_c0_g1_6587_TPlot.pdf
TRINITY_DN15013_c0_g1:366	si_a319	TRINITY_DN15013_c0_g1	355	375	366	-22.40	-14.90	0.665178571428572	8	1-7,375-369;10-15,366-361;17-21,359-355	8-9,368-367[SIL];16-16,360-360[SIL]	(((((.((((((..(((((((&)))))))..)))))).)))))	AAUAAUGGAAUCUGGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN15013_c0_g1_366_TPlot.pdf
TRINITY_DN15013_c0_g2:324	si_s15	TRINITY_DN15013_c0_g2	312	333	324	-25.60	-16.80	0.65625	8	1-10,333-324;13-16,321-318;17-20,316-313	11-12,323-322[SIL];x-x,317-317[BULt];21-21,312-312[UP3]	.((((.((((..((((((((((&))))))))))..))))-)))).	AGCAACUCAAAUUAGUAGUGAU&AUUAUUACUAUAUUGA-UUGCA	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN15013_c0_g2_324_TPlot.pdf
TRINITY_DN15013_c0_g2:325	si_s14	TRINITY_DN15013_c0_g2	313	334	325	-25.30	-17.60	0.695652173913044	6	1-11,334-324;14-17,321-318;18-21,316-313	12-13,323-322[SIL];x-x,317-317[BULt]	((((.((((..(((((((((((&)))))))))))..))))-))))	GCAACUCAAAUUAGUAGUGAUA&UAUUAUUACUAUAUUGA-UUGC	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN15013_c0_g2_325_TPlot.pdf
TRINITY_DN15013_c0_g2:326	si_s13	TRINITY_DN15013_c0_g2	314	335	326	-22.90	-15.00	0.655021834061135	5	1-12,335-324;15-18,321-318;19-21,316-314	13-14,323-322[SIL];x-x,317-317[BULt]	(((.((((..((((((((((((&))))))))))))..))))-)))	CAACUCAAAUUAGUAGUGAUAA&UUAUUAUUACUAUAUUGA-UUG	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN15013_c0_g2_326_TPlot.pdf
TRINITY_DN1501_c0_g1:1995	si_s194	TRINITY_DN1501_c0_g1	1986	2004	1995	-30.30	-20.98	0.692409240924092	7	1-13,2004-1992;18-20,1989-1987	14-17,1991-1990[AILq];21-21,1986-1986[UP3]	.(((..--(((((((((((((&)))))))))))))....))).	AGGUUG--UCCAGAAUAGUCG&CGAUUAUUUUGGAAUGUACCA	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN1501_c0_g1_1995_TPlot.pdf
TRINITY_DN1501_c0_g1:1996	si_s193	TRINITY_DN1501_c0_g1	1987	2005	1996	-30.40	-20.68	0.680263157894737	7	2-14,2004-1992;19-21,1989-1987	1-1,2005-2005[UP5];15-18,1991-1990[AILq]	(((..--(((((((((((((.&.)))))))))))))....)))	GGUUG--UCCAGAAUAGUCGG&ACGAUUAUUUUGGAAUGUACC	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN1501_c0_g1_1996_TPlot.pdf
TRINITY_DN1501_c0_g1:1998	si_s191	TRINITY_DN1501_c0_g1	1987	2007	1998	-26.60	-17.60	0.661654135338346	12	4-16,2004-1992	1-3,2007-2005[UP5];17-21,1991-1987[UP3]	.....(((((((((((((...&...))))))))))))).....	GGUUGUCCAGAAUAGUCGGAG&UAACGAUUAUUUUGGAAUGUA	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN1501_c0_g1_1998_TPlot.pdf
TRINITY_DN1501_c0_g1:2001	si_s188	TRINITY_DN1501_c0_g1	1990	2012	2001	-28.20	-18.70	0.663120567375887	11.5	1-2,2012-2011;3-4,2009-2008;7-19,2004-1992	x-x,2010-2010[BULt];5-6,2007-2005[AILt];20-21,1991-1990[UP3]	..(((((((((((((...((.((&))-))-..)))))))))))))..	UGUCCAGAAUAGUCGGAGACAUC&GA-GU-AACGAUUAUUUUGGAAU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN1501_c0_g1_2001_TPlot.pdf
TRINITY_DN15022_c0_g1:2296	si_a21	TRINITY_DN15022_c0_g1	2285	2305	2296	-24.30	-16.90	0.695473251028807	8.5	1-3,2305-2303;5-9,2301-2297;11-20,2295-2286	4-4,2302-2302[SIL];10-10,2296-2296[SIL];21-21,2285-2285[UP3]	.((((((((((.(((((.(((&))).))))).)))))))))).	AUGGAACUAAACGUAGAGGGG&CCUAUUUAUUUUUAGUUCUAA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN15022_c0_g1_2296_TPlot.pdf
TRINITY_DN15022_c0_g1:2297	si_a20	TRINITY_DN15022_c0_g1	2286	2306	2297	-26.70	-18.80	0.704119850187266	8	1-4,2306-2303;6-10,2301-2297;12-21,2295-2286	5-5,2302-2302[SIL];11-11,2296-2296[SIL]	((((((((((.(((((.((((&)))).))))).))))))))))	UGGAACUAAACGUAGAGGGGU&GCCUAUUUAUUUUUAGUUCUA	2	0.967779006855436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN15022_c0_g1_2297_TPlot.pdf
TRINITY_DN15022_c0_g1:2298	si_a19	TRINITY_DN15022_c0_g1	2287	2307	2298	-27.00	-17.90	0.662962962962963	9.5	2-5,2306-2303;7-11,2301-2297;13-21,2295-2287	1-1,2307-2307[UP5];6-6,2302-2302[SIL];12-12,2296-2296[SIL]	(((((((((.(((((.((((.&.)))).))))).)))))))))	GGAACUAAACGUAGAGGGGUA&AGCCUAUUUAUUUUUAGUUCU	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN15022_c0_g1_2298_TPlot.pdf
TRINITY_DN15022_c0_g1:2335	si_a758	TRINITY_DN15022_c0_g1	2324	2345	2335	-34.00	-22.50	0.661764705882353	6	1-9,2345-2337;11-17,2334-2328;19-21,2326-2324	10-10,2336-2335[AILt];18-18,2327-2327[SIL]	(((.(((((((..(((((((((&)))))))))-.))))))).)))	CAGACAAAGACGACAAAGGAGG&CCUCCUUUG-GGUUUUUGAUUG	2	0.999924879086262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN15022_c0_g1_2335_TPlot.pdf
TRINITY_DN15022_c0_g1:2337	si_a757	TRINITY_DN15022_c0_g1	2325	2346	2337	-33.10	-22.10	0.667673716012085	8.5	2-10,2345-2337;12-18,2334-2328	1-1,2346-2346[UP5];11-11,2336-2335[AILt];19-21,2327-2325[UP3]	...(((((((..(((((((((.&.)))))))))-.)))))))...	AGACAAAGACGACAAAGGAGGA&ACCUCCUUUG-GGUUUUUGAUU	3	0.999999957958114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN15022_c0_g1_2337_TPlot.pdf
TRINITY_DN15022_c0_g1:2338	si_a756	TRINITY_DN15022_c0_g1	2326	2347	2338	-33.10	-22.10	0.667673716012085	9.5	3-11,2345-2337;13-19,2334-2328	1-2,2347-2346[UP5];12-12,2336-2335[AILt];20-21,2327-2326[UP3]	..(((((((..(((((((((..&..)))))))))-.)))))))..	GACAAAGACGACAAAGGAGGAG&AACCUCCUUUG-GGUUUUUGAU	3	0.999999897547806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN15022_c0_g1_2338_TPlot.pdf
TRINITY_DN15022_c0_g1:712	si_a140	TRINITY_DN15022_c0_g1	700	721	712	-25.20	-17.10	0.678571428571429	6.5	1-10,721-712;11-12,710-709;14-21,707-700	x-x,711-711[BULt];13-13,708-708[SIL]	((((((((.((.((((((((((&))))))))))-)).))))))))	AGGACAAUUACAGAUUGGUUAC&GUAAUUAAUC-GUUGUUGUUUU	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN15022_c0_g1_712_TPlot.pdf
TRINITY_DN15022_c0_g1:963	si_a323	TRINITY_DN15022_c0_g1	952	972	963	-26.80	-17.50	0.652985074626866	5	1-6,972-967;8-13,965-960;15-19,958-954	7-7,966-966[SIL];14-14,959-959[SIL];20-21,953-952[UP3]	..(((((.((((((.((((((&)))))).)))))).)))))..	CUGGAAUCAAAAAAGCAUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.999999997767088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN15022_c0_g1_963_TPlot.pdf
TRINITY_DN15022_c0_g2:1337	si_a323	TRINITY_DN15022_c0_g2	1326	1346	1337	-26.80	-17.50	0.652985074626866	5	1-6,1346-1341;8-13,1339-1334;15-19,1332-1328	7-7,1340-1340[SIL];14-14,1333-1333[SIL];20-21,1327-1326[UP3]	..(((((.((((((.((((((&)))))).)))))).)))))..	CUGGAAUCAAAAAAGCAUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.999999998680878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN15022_c0_g2_1337_TPlot.pdf
TRINITY_DN15022_c0_g2:1696	si_s621	TRINITY_DN15022_c0_g2	1682	1705	1696	-32.50	-21.90	0.673846153846154	8	1-10,1705-1696;12-14,1695-1693;15-20,1688-1683	11-11,x-x[BULq];x-x,1692-1689[BULt];21-21,1682-1682[UP3]	.((((((....(((-((((((((((&)))))))))).)))----)))))).	GACGAAAAUGUAGA-CGCUUGGGUU&AAUCCAAGCGAUCU----UUUCGUA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN15022_c0_g2_1696_TPlot.pdf
TRINITY_DN15022_c0_g2:1697	si_s620	TRINITY_DN15022_c0_g2	1683	1706	1697	-32.10	-21.70	0.67601246105919	8	2-11,1705-1696;13-15,1695-1693;16-21,1688-1683	1-1,1706-1706[UP5];12-12,x-x[BULq];x-x,1692-1689[BULt]	((((((....(((-((((((((((.&.)))))))))).)))----))))))	ACGAAAAUGUAGA-CGCUUGGGUUA&AAAUCCAAGCGAUCU----UUUCGU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN15022_c0_g2_1697_TPlot.pdf
TRINITY_DN15022_c0_g2:1955	si_a21	TRINITY_DN15022_c0_g2	1944	1964	1955	-24.30	-16.90	0.695473251028807	8.5	1-3,1964-1962;5-9,1960-1956;11-20,1954-1945	4-4,1961-1961[SIL];10-10,1955-1955[SIL];21-21,1944-1944[UP3]	.((((((((((.(((((.(((&))).))))).)))))))))).	AUGGAACUAAACGUAGAGGGG&CCUAUUUAUUUUUAGUUCUAA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN15022_c0_g2_1955_TPlot.pdf
TRINITY_DN15022_c0_g2:1956	si_a20	TRINITY_DN15022_c0_g2	1945	1965	1956	-26.70	-18.80	0.704119850187266	8	1-4,1965-1962;6-10,1960-1956;12-21,1954-1945	5-5,1961-1961[SIL];11-11,1955-1955[SIL]	((((((((((.(((((.((((&)))).))))).))))))))))	UGGAACUAAACGUAGAGGGGU&GCCUAUUUAUUUUUAGUUCUA	2	0.962588730329404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN15022_c0_g2_1956_TPlot.pdf
TRINITY_DN15022_c0_g2:1957	si_a19	TRINITY_DN15022_c0_g2	1946	1966	1957	-27.00	-17.90	0.662962962962963	9.5	2-5,1965-1962;7-11,1960-1956;13-21,1954-1946	1-1,1966-1966[UP5];6-6,1961-1961[SIL];12-12,1955-1955[SIL]	(((((((((.(((((.((((.&.)))).))))).)))))))))	GGAACUAAACGUAGAGGGGUA&AGCCUAUUUAUUUUUAGUUCU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN15022_c0_g2_1957_TPlot.pdf
TRINITY_DN15022_c0_g2:1994	si_a758	TRINITY_DN15022_c0_g2	1983	2004	1994	-34.00	-22.50	0.661764705882353	6	1-9,2004-1996;11-17,1993-1987;19-21,1985-1983	10-10,1995-1994[AILt];18-18,1986-1986[SIL]	(((.(((((((..(((((((((&)))))))))-.))))))).)))	CAGACAAAGACGACAAAGGAGG&CCUCCUUUG-GGUUUUUGAUUG	2	0.999938443182063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN15022_c0_g2_1994_TPlot.pdf
TRINITY_DN15022_c0_g2:1996	si_a757	TRINITY_DN15022_c0_g2	1984	2005	1996	-33.10	-22.10	0.667673716012085	8.5	2-10,2004-1996;12-18,1993-1987	1-1,2005-2005[UP5];11-11,1995-1994[AILt];19-21,1986-1984[UP3]	...(((((((..(((((((((.&.)))))))))-.)))))))...	AGACAAAGACGACAAAGGAGGA&ACCUCCUUUG-GGUUUUUGAUU	3	0.99999994418289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN15022_c0_g2_1996_TPlot.pdf
TRINITY_DN15022_c0_g2:1997	si_a756	TRINITY_DN15022_c0_g2	1985	2006	1997	-33.10	-22.10	0.667673716012085	9.5	3-11,2004-1996;13-19,1993-1987	1-2,2006-2005[UP5];12-12,1995-1994[AILt];20-21,1986-1985[UP3]	..(((((((..(((((((((..&..)))))))))-.)))))))..	GACAAAGACGACAAAGGAGGAG&AACCUCCUUUG-GGUUUUUGAU	3	0.999999909265911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN15022_c0_g2_1997_TPlot.pdf
TRINITY_DN15022_c0_g2:419	si_a140	TRINITY_DN15022_c0_g2	407	428	419	-25.20	-17.10	0.678571428571429	6.5	1-10,428-419;11-12,417-416;14-21,414-407	x-x,418-418[BULt];13-13,415-415[SIL]	((((((((.((.((((((((((&))))))))))-)).))))))))	AGGACAAUUACAGAUUGGUUAC&GUAAUUAAUC-GUUGUUGUUUU	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN15022_c0_g2_419_TPlot.pdf
TRINITY_DN1502_c0_g1:1772	si_a491	TRINITY_DN1502_c0_g1	1762	1781	1772	-29.90	-23.00	0.769230769230769	6.5	3-11,1779-1771;13-21,1770-1762	1-2,1781-1780[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GACGAGAAA-GACAUGUUCGU&UAGAAUAUGUCGUUUUUCGUC	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN1502_c0_g1_1772_TPlot.pdf
TRINITY_DN1502_c0_g1:1774	si_a489	TRINITY_DN1502_c0_g1	1764	1783	1774	-27.70	-18.90	0.682310469314079	6.5	1-2,1783-1782;5-13,1779-1771;15-21,1770-1764	3-4,1781-1780[SIL];14-14,x-x[BULq]	(((((((-(((((((((..((&))..))))))))).)))))))	CGAGAAA-GACAUGUUCGUUA&UAUAGAAUAUGUCGUUUUUCG	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN1502_c0_g1_1774_TPlot.pdf
TRINITY_DN1502_c0_g1:2803	si_a784	TRINITY_DN1502_c0_g1	2792	2813	2803	-24.70	-16.30	0.659919028340081	10.5	2-8,2812-2806;9-16,2804-2797	1-1,2813-2813[UP5];x-x,2805-2805[BULt];17-21,2796-2792[UP3]	.....((((((((.(((((((.&.)))))))-)))))))).....	GCUGAAGGAGAGUAAGAAGAGG&ACUCUUCU-AUUUUUCUAUUUU	2	0.999999999999878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1502_c0_g1_2803_TPlot.pdf
TRINITY_DN1502_c0_g1:2804	si_a783	TRINITY_DN1502_c0_g1	2793	2814	2804	-24.70	-16.30	0.659919028340081	11	3-9,2812-2806;10-17,2804-2797	1-2,2814-2813[UP5];x-x,2805-2805[BULt];18-21,2796-2793[UP3]	....((((((((.(((((((..&..)))))))-))))))))....	CUGAAGGAGAGUAAGAAGAGGC&AACUCUUCU-AUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1502_c0_g1_2804_TPlot.pdf
TRINITY_DN1502_c0_g1:2833	si_s77	TRINITY_DN1502_c0_g1	2822	2842	2833	-25.50	-17.80	0.698039215686275	8.5	1-11,2842-2832;13-20,2830-2823	12-12,2831-2831[SIL];21-21,2822-2822[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	UGAGAAGGGCAAGAAGGGAGG&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1502_c0_g1_2833_TPlot.pdf
TRINITY_DN1502_c0_g1:2834	si_s76	TRINITY_DN1502_c0_g1	2823	2843	2834	-23.60	-19.40	0.822033898305085	7	1-12,2843-2832;14-21,2830-2823	13-13,2831-2831[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAGAAGGGCAAGAAGGGAGGU&AUUUUUUUUCUUUCCUUUCUU	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1502_c0_g1_2834_TPlot.pdf
TRINITY_DN1502_c0_g1:2835	si_s75	TRINITY_DN1502_c0_g1	2824	2844	2835	-24.00	-19.10	0.795833333333333	7	1-13,2844-2832;15-21,2830-2824	14-14,2831-2831[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	AGAAGGGCAAGAAGGGAGGUG&UAUUUUUUUUCUUUCCUUUCU	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1502_c0_g1_2835_TPlot.pdf
TRINITY_DN1502_c0_g1:3703	si_a194	TRINITY_DN1502_c0_g1	3692	3712	3703	-29.40	-22.60	0.768707482993197	9.5	2-14,3711-3699	1-1,3712-3712[UP5];15-21,3698-3692[UP3]	.......(((((((((((((.&.))))))))))))).......	GUUGCAAGGUGAGCAGGGAAC&UUUCCCUGUUCACUAAUAAAU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN1502_c0_g1_3703_TPlot.pdf
TRINITY_DN1502_c0_g1:3709	si_a188	TRINITY_DN1502_c0_g1	3698	3718	3709	-32.00	-23.90	0.746875	11	5-6,3714-3713;8-20,3711-3699	1-4,3718-3715[UP5];7-7,3712-3712[SIL];21-21,3698-3698[UP3]	.(((((((((((((.((....&....)).))))))))))))).	AGGUGAGCAGGGAACGAGUCG&AAUAUCUUUCCCUGUUCACUA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN1502_c0_g1_3709_TPlot.pdf
TRINITY_DN1502_c0_g1:4613	si_a148	TRINITY_DN1502_c0_g1	4602	4622	4613	-30.30	-20.40	0.673267326732673	9.5	2-2,4621-4621;4-13,4619-4610;15-20,4608-4603	1-1,4622-4622[UP5];3-3,4620-4620[SIL];14-14,4609-4609[SIL];21-21,4602-4602[UP3]	.((((((.((((((((((.(.&.).)))))))))).)))))).	AUGACCUAGAGACGAUAGGGG&UCGUUGUUGUUUUAAGGUCAA	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN1502_c0_g1_4613_TPlot.pdf
TRINITY_DN15033_c0_g1:5848	si_a724	TRINITY_DN15033_c0_g1	5836	5857	5848	-36.70	-24.40	0.664850136239782	9.5	1-10,5857-5848;11-15,5846-5842	x-x,5847-5847[BULt];16-21,5841-5836[UP3]	......(((((.((((((((((&))))))))))-)))))......	CCUCCCGUGCCACGAGUGACGA&UCGUUACUCG-GGCAUCUUUAC	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN15033_c0_g1_5848_TPlot.pdf
TRINITY_DN15037_c0_g1:1345	si_s621	TRINITY_DN15037_c0_g1	1334	1353	1345	-32.50	-21.70	0.667692307692308	6	1-6,1353-1348;8-8,1347-1347;10-20,1345-1335	7-7,x-x[BULq];9-9,1346-1346[SIL];21-21,1334-1334[UP3]	.(((((((((((.(-((((((&)))))).).))))))))))).	CACGAGGAGAUCUC-UGGAUU&AAUCCAAGCGAUCUUUUCGUA	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN15037_c0_g1_1345_TPlot.pdf
TRINITY_DN1503_c0_g1:1642	si_a756	TRINITY_DN1503_c0_g1	1631	1651	1642	-33.10	-21.68	0.654984894259819	8.5	2-10,1650-1642;14-21,1638-1631	1-1,1651-1651[UP5];11-13,1641-1639[SIL]	((((((((...(((((((((.&.)))))))))...))))))))	GUCGAAGAGAAGAAGGAGGUG&AACCUCCUUUGGGUUUUUGAU	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN1503_c0_g1_1642_TPlot.pdf
TRINITY_DN1503_c0_g1:1643	si_s90	TRINITY_DN1503_c0_g1	1632	1652	1643	-35.30	-23.80	0.674220963172805	6.5	1-2,1652-1651;4-14,1649-1639;16-21,1637-1632	3-3,1650-1650[SIL];15-15,1638-1638[SIL]	((((((.(((((((((((.((&)).))))))))))).))))))	UCGAAGAGAAGAAGGAGGUGG&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999989761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1503_c0_g1_1643_TPlot.pdf
TRINITY_DN1503_c0_g1:1777	si_s103	TRINITY_DN1503_c0_g1	1766	1786	1777	-34.10	-22.80	0.668621700879765	9	2-13,1785-1774	1-1,1786-1786[UP5];14-21,1773-1766[UP3]	........((((((((((((.&.))))))))))))........	ACCACAGACCAAUCCGAAGCA&CGCUUCGGAUUGGAAAAUAGA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN1503_c0_g1_1777_TPlot.pdf
TRINITY_DN1503_c0_g1:1778	si_s102	TRINITY_DN1503_c0_g1	1767	1787	1778	-34.10	-22.80	0.668621700879765	10	3-14,1785-1774	1-2,1787-1786[UP5];15-21,1773-1767[UP3]	.......((((((((((((..&..)))))))))))).......	CCACAGACCAAUCCGAAGCAC&UCGCUUCGGAUUGGAAAAUAG	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN1503_c0_g1_1778_TPlot.pdf
TRINITY_DN1503_c0_g1:1780	si_s100	TRINITY_DN1503_c0_g1	1769	1789	1780	-33.70	-22.80	0.676557863501484	12	5-16,1785-1774	1-4,1789-1786[UP5];17-21,1773-1769[UP3]	.....((((((((((((....&....)))))))))))).....	ACAGACCAAUCCGAAGCACUG&CUUCGCUUCGGAUUGGAAAAU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN1503_c0_g1_1780_TPlot.pdf
TRINITY_DN1503_c0_g1:1781	si_s99	TRINITY_DN1503_c0_g1	1770	1790	1781	-34.60	-22.80	0.658959537572254	13	6-17,1785-1774	1-5,1790-1786[UP5];18-21,1773-1770[UP3]	....((((((((((((.....&.....))))))))))))....	CAGACCAAUCCGAAGCACUGA&UCUUCGCUUCGGAUUGGAAAA	4	0.999740549237147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN1503_c0_g1_1781_TPlot.pdf
TRINITY_DN1503_c0_g1:1785	si_s95	TRINITY_DN1503_c0_g1	1774	1795	1785	-36.30	-23.78	0.655096418732782	9	2-5,1794-1791;6-6,1789-1789;10-21,1785-1774	1-1,1795-1795[UP5];x-x,1790-1790[BULt];7-9,1788-1786[SIL]	((((((((((((...(.((((.&.))))-)...))))))))))))	CCAAUCCGAAGCACUGAAAGAC&UUCUU-CUUCGCUUCGGAUUGG	2	0.999775391228409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN1503_c0_g1_1785_TPlot.pdf
TRINITY_DN1503_c0_g1:1888	si_s72	TRINITY_DN1503_c0_g1	1875	1897	1888	-24.10	-16.10	0.66804979253112	6.5	1-4,1897-1894;6-15,1892-1883;16-21,1880-1875	5-5,1893-1893[SIL];x-x,1882-1881[BULt]	((((((..((((((((((.((((&)))).))))))))))--))))))	AAGGAAAAGGAAAAAGAAAAGGA&UUCUAUUUUUUUUCU--UUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1503_c0_g1_1888_TPlot.pdf
TRINITY_DN1503_c0_g1:1889	si_s71	TRINITY_DN1503_c0_g1	1876	1898	1889	-25.70	-18.10	0.704280155642023	6.5	1-5,1898-1894;7-16,1892-1883;17-21,1880-1876	6-6,1893-1893[SIL];x-x,1882-1881[BULt]	(((((..((((((((((.(((((&))))).))))))))))--)))))	AGGAAAAGGAAAAAGAAAAGGAG&CUUCUAUUUUUUUUCU--UUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1503_c0_g1_1889_TPlot.pdf
TRINITY_DN1503_c0_g1:1907	si_s77	TRINITY_DN1503_c0_g1	1895	1916	1907	-25.50	-17.90	0.701960784313725	6	1-12,1916-1905;14-21,1902-1895	13-13,1904-1903[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	GGAGAAGGAAAAAGAGAAAGAA&UUUUUUUUCUUU-CCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1503_c0_g1_1907_TPlot.pdf
TRINITY_DN1503_c0_g1:1912	si_s78	TRINITY_DN1503_c0_g1	1894	1921	1912	-26.20	-18.40	0.702290076335878	17	1-12,1921-1910;13-21,1902-1894	x-x,1909-1903[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	AGGAGAAGGAAAAAGAGAAAGAAAAGGA&UUUUUUUCUUUC-------CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1503_c0_g1_1912_TPlot.pdf
TRINITY_DN1503_c0_g1:1914	si_s70	TRINITY_DN1503_c0_g1	1901	1923	1914	-25.80	-16.90	0.655038759689922	7.5	2-6,1922-1918;8-18,1916-1906;19-21,1903-1901	1-1,1923-1923[UP5];7-7,1917-1917[SIL];x-x,1905-1904[BULt]	(((..(((((((((((.(((((.&.))))).)))))))))))--)))	GGAAAAAGAGAAAGAAAAGGAGA&ACUUCUAUUUUUUUUCUU--UCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1503_c0_g1_1914_TPlot.pdf
TRINITY_DN1503_c0_g1:1917	si_s69	TRINITY_DN1503_c0_g1	1906	1927	1917	-23.40	-15.40	0.658119658119658	9	3-7,1925-1921;9-20,1918-1907	1-2,1927-1926[UP5];8-8,1920-1919[AILt];21-21,1906-1906[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	AAGAGAAAGAAAAGGAGAAGGA&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1503_c0_g1_1917_TPlot.pdf
TRINITY_DN1503_c0_g1:1918	si_s68	TRINITY_DN1503_c0_g1	1907	1928	1918	-23.10	-15.40	0.666666666666667	10	4-8,1925-1921;10-21,1918-1907	1-3,1928-1926[UP5];9-9,1920-1919[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	AGAGAAAGAAAAGGAGAAGGAA&CAACUUCU-AUUUUUUUUCUUU	2	0.999999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1503_c0_g1_1918_TPlot.pdf
TRINITY_DN1503_c0_g1:1938	si_s70	TRINITY_DN1503_c0_g1	1925	1947	1938	-25.80	-16.90	0.655038759689922	7.5	2-6,1946-1942;8-18,1940-1930;19-21,1927-1925	1-1,1947-1947[UP5];7-7,1941-1941[SIL];x-x,1929-1928[BULt]	(((..(((((((((((.(((((.&.))))).)))))))))))--)))	GGAAAAAGAGAAAGAAAAGGAGA&ACUUCUAUUUUUUUUCUU--UCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1503_c0_g1_1938_TPlot.pdf
TRINITY_DN1503_c0_g1:2188	si_s92	TRINITY_DN1503_c0_g1	2177	2197	2188	-34.90	-25.20	0.722063037249284	6	1-11,2197-2187;14-19,2184-2179	12-13,2186-2185[SIL];20-21,2178-2177[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	CACCGAAGAAGAGAAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1503_c0_g1_2188_TPlot.pdf
TRINITY_DN1503_c0_g1:742	si_s44	TRINITY_DN1503_c0_g1	731	751	742	-24.70	-19.70	0.797570850202429	8	1-17,751-735	18-21,734-731[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUGGAAAUCCAGUUGUUGGA&UUUAAUAAUUGGAUUUCAAGU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN1503_c0_g1_742_TPlot.pdf
TRINITY_DN1503_c0_g1:758	si_s92	TRINITY_DN1503_c0_g1	746	767	758	-34.90	-23.70	0.679083094555874	7	2-12,766-756;13-17,754-750;19-21,748-746	1-1,767-767[UP5];x-x,755-755[BULt];18-18,749-749[SIL]	(((.(((((.(((((((((((.&.)))))))))))-))))).)))	GUUGGAGGUAGAAGAGGAAGAC&UUCUUCUUCUUC-GCUUCGGAU	4	0.999999998361545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1503_c0_g1_758_TPlot.pdf
TRINITY_DN15042_c0_g1:418	si_a634	TRINITY_DN15042_c0_g1	408	427	418	-26.40	-17.20	0.651515151515151	8	1-3,427-425;5-12,423-416;15-21,414-408	4-4,424-424[SIL];13-14,415-415[AILq]	(((((((.-((((((((.(((&))).))))))))..)))))))	UUACUCAU-GAGAUUGAGGUA&UAUGUCGAUUUUUUUGAGUAA	0	0.489772976103668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN15042_c0_g1_418_TPlot.pdf
TRINITY_DN15044_c0_g2:3141	si_a546	TRINITY_DN15044_c0_g2	3130	3150	3141	-28.60	-20.90	0.730769230769231	8	1-4,3150-3147;7-20,3144-3131	5-6,3146-3145[SIL];21-21,3130-3130[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGUGAAGAAGUAGAUCAAGCC&GGUUCAAUCUAUUUCUUUAUC	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN15044_c0_g2_3141_TPlot.pdf
TRINITY_DN15044_c0_g2:3424	si_a68	TRINITY_DN15044_c0_g2	3413	3433	3424	-25.40	-19.10	0.751968503937008	7	1-9,3433-3425;12-21,3422-3413	10-11,3424-3423[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	UGAAAGGCAGAAUGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN15044_c0_g2_3424_TPlot.pdf
TRINITY_DN15044_c0_g2:4297	si_a113	TRINITY_DN15044_c0_g2	4286	4306	4297	-26.20	-18.60	0.709923664122137	13.5	6-18,4301-4289	1-5,4306-4302[UP5];19-21,4288-4286[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAGGGGACAAGCUCGUCUGUC&AAAAUACGAGCUUGUUUUAUA	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN15044_c0_g2_4297_TPlot.pdf
TRINITY_DN15044_c0_g2:4301	si_a109	TRINITY_DN15044_c0_g2	4290	4307	4301	-28.50	-18.74	0.657543859649123	11	2-5,4306-4303;10-21,4301-4290	1-1,4307-4307[UP5];6-9,4302-4302[AILq]	((((((((((((.---((((.&.))))....))))))))))))	GGACAAGCUCGUC---UGUCG&AGAUAAAAUACGAGCUUGUUU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN15044_c0_g2_4301_TPlot.pdf
TRINITY_DN15047_c0_g2:26	si_a828	TRINITY_DN15047_c0_g2	14	35	26	-24.10	-16.20	0.672199170124481	3.5	1-11,35-25;12-21,23-14	x-x,24-24[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	UUUUAUUUUUCUUUUUUUCCUU&AAGGAAAGAAA-AAAAAUAGAA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN15047_c0_g2_26_TPlot.pdf
TRINITY_DN15047_c0_g2:29	si_a825	TRINITY_DN15047_c0_g2	17	38	29	-24.00	-15.80	0.658333333333333	4	2-14,37-25;15-21,23-17	1-1,38-38[UP5];x-x,24-24[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	UAUUUUUCUUUUUUUCCUUUUC&AGAAAGGAAAGAAA-AAAAAUA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a825_TRINITY_DN15047_c0_g2_29_TPlot.pdf
TRINITY_DN15047_c0_g2:31	si_a823	TRINITY_DN15047_c0_g2	20	41	31	-25.50	-17.00	0.666666666666667	3.5	1-7,41-35;8-16,33-25;18-21,23-20	x-x,34-34[BULt];17-17,24-24[SIL]	((((.(((((((((.(((((((&)))))))-))))))))).))))	UUUUCUUUUUUUCCUUUUCUUC&GAAGAAA-GGAAAGAAAAAAAA	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN15047_c0_g2_31_TPlot.pdf
TRINITY_DN15049_c0_g1:397	si_a152	TRINITY_DN15049_c0_g1	386	406	397	-29.20	-21.90	0.75	8	1-15,406-392	16-21,391-386[UP3]	......(((((((((((((((&)))))))))))))))......	CUUAUGGACCUUGAAGCAACA&UGUUGUUUUAAGGUCAAUCUA	0	0.00896491987738746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN15049_c0_g1_397_TPlot.pdf
TRINITY_DN1504_c0_g1:1175	si_a222	TRINITY_DN1504_c0_g1	1163	1184	1175	-25.20	-16.60	0.658730158730159	9	4-10,1181-1175;11-12,1173-1172;14-21,1170-1163	1-3,1184-1182[UP5];x-x,1174-1174[BULt];13-13,1171-1171[SIL]	((((((((.((.(((((((...&...)))))))-)).))))))))	AUUAUAGAUGCGAUGAGUUAUU&UUAAACUCAU-GUUUCUAUAAU	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN1504_c0_g1_1175_TPlot.pdf
TRINITY_DN1504_c0_g1:1428	si_s159	TRINITY_DN1504_c0_g1	1416	1437	1428	-42.60	-27.90	0.654929577464789	9.5	4-16,1434-1422;17-19,1420-1418	1-3,1437-1435[UP5];x-x,1421-1421[BULt];20-21,1417-1416[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	AAACCUCUUGGCCAUGGACAAG&GAGGUUCAUGGCCAGG-GGUAA	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN1504_c0_g1_1428_TPlot.pdf
TRINITY_DN1504_c0_g1:2162	si_s89	TRINITY_DN1504_c0_g1	2144	2171	2162	-35.30	-23.10	0.654390934844193	9.5	2-15,2170-2157;16-20,2149-2145	1-1,2171-2171[UP5];x-x,2156-2150[BULt];21-21,2144-2144[UP3]	.(((((.......((((((((((((((.&.))))))))))))))-------))))).	AGAAGUCCAAAAAGAAGAAGAAGAAAGC&CCUUUCUUCUUCUUC-------GCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1504_c0_g1_2162_TPlot.pdf
TRINITY_DN1504_c0_g1:89	si_a406	TRINITY_DN1504_c0_g1	78	97	89	-19.80	-14.50	0.732323232323232	5	1-7,97-91;9-21,90-78	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	UUUAAGUGUAAAU-AAACAGU&AUUGUUUUGUUUAUAUUUAAA	4	0.999998416077658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1504_c0_g1_89_TPlot.pdf
TRINITY_DN15050_c1_g1:111	si_a70	TRINITY_DN15050_c1_g1	100	120	111	-23.90	-18.50	0.774058577405858	7.5	1-7,120-114;10-19,111-102	8-9,113-112[SIL];20-21,101-100[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	AUUGAAGAACAGGGUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN15050_c1_g1_111_TPlot.pdf
TRINITY_DN15057_c0_g2:1074	si_a454	TRINITY_DN15057_c0_g2	1062	1083	1074	-21.30	-14.40	0.676056338028169	9	1-12,1083-1072;13-17,1070-1066	x-x,1071-1071[BULt];18-21,1065-1062[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	UACAGUAUGUUGGCAACAAUUA&UAAUUGUUGUUA-UAUAUAAUA	4	0.999986162919743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN15057_c0_g2_1074_TPlot.pdf
TRINITY_DN15060_c0_g1:29	si_s75	TRINITY_DN15060_c0_g1	18	38	29	-24.00	-16.50	0.6875	18	10-21,29-18	1-9,38-30[UP5]	((((((((((((.........&.........))))))))))))	AGAAAGGAAGGAUGCAAGCAG&UAUUUUUUUUCUUUCCUUUCU	0	0.809000196045885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN15060_c0_g1_29_TPlot.pdf
TRINITY_DN15063_c1_g1:265	si_s12	TRINITY_DN15063_c1_g1	254	274	265	-22.80	-14.90	0.653508771929825	8.5	2-15,273-260;18-19,257-256	1-1,274-274[UP5];16-17,259-258[SIL];20-21,255-254[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	UCUCUUUGUAGUGAUAAUGGC&CUUAUUAUUACUAUAUUGAUU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN15063_c1_g1_265_TPlot.pdf
TRINITY_DN15063_c1_g1:268	si_s9	TRINITY_DN15063_c1_g1	257	279	268	-22.90	-15.10	0.65938864628821	10.5	1-5,279-275;6-18,272-260;21-21,257-257	x-x,274-273[BULt];19-20,259-258[SIL]	(..(((((((((((((..(((((&)))))--)))))))))))))..)	CUUUGUAGUGAUAAUGGCGGUGA&UUACU--UAUUAUUACUAUAUUG	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN15063_c1_g1_268_TPlot.pdf
TRINITY_DN15063_c1_g1:270	si_s7	TRINITY_DN15063_c1_g1	259	281	270	-21.70	-15.00	0.691244239631336	12	3-7,279-275;8-20,272-260	1-2,281-280[UP5];x-x,274-273[BULt];21-21,259-259[UP3]	.(((((((((((((..(((((..&..)))))--))))))))))))).	UUGUAGUGAUAAUGGCGGUGAAU&UAUUACU--UAUUAUUACUAUAU	4	0.999745850014447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN15063_c1_g1_270_TPlot.pdf
TRINITY_DN15063_c1_g1:271	si_s6	TRINITY_DN15063_c1_g1	260	282	271	-21.70	-14.90	0.686635944700461	13	4-8,279-275;9-21,272-260	1-3,282-280[UP5];x-x,274-273[BULt]	(((((((((((((..(((((...&...)))))--)))))))))))))	UGUAGUGAUAAUGGCGGUGAAUA&AUAUUACU--UAUUAUUACUAUA	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN15063_c1_g1_271_TPlot.pdf
TRINITY_DN15064_c0_g1:187	si_s73	TRINITY_DN15064_c0_g1	176	196	187	-24.00	-17.70	0.7375	7	2-3,195-194;5-21,192-176	1-1,196-196[UP5];4-4,193-193[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	AGAGGAAGGAAAAAGGGGAGC&UCUAUUUUUUUUCUUUCCUUU	4	0.999999999974148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN15064_c0_g1_187_TPlot.pdf
TRINITY_DN15068_c0_g1:132	si_s316	TRINITY_DN15068_c0_g1	122	142	132	-31.50	-21.10	0.66984126984127	6.5	1-8,142-135;9-16,133-126;18-21,125-122	x-x,134-134[BULt];17-17,x-x[BULq]	((((-((((((((.((((((((&))))))))-)))))))).))))	UUUG-AACAGGAGCGGAUAGAG&UUCUGUCC-UUCUUGUUACAAA	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN15068_c0_g1_132_TPlot.pdf
TRINITY_DN15068_c0_g1:137	si_s312	TRINITY_DN15068_c0_g1	125	146	137	-29.00	-19.00	0.655172413793103	13	5-12,142-135;13-20,133-126	1-4,146-143[UP5];x-x,134-134[BULt];21-21,125-125[UP3]	.((((((((.((((((((....&....))))))))-)))))))).	GAACAGGAGCGGAUAGAGGAUG&AAAAUUCUGUCC-UUCUUGUUA	3	0.999999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN15068_c0_g1_137_TPlot.pdf
TRINITY_DN15068_c0_g1:333	si_a785	TRINITY_DN15068_c0_g1	322	345	333	-25.90	-18.30	0.706563706563707	14	1-7,345-339;11-21,332-322	8-10,338-333[AILt]	(((((((((((......(((((((&)))))))---...)))))))))))	GAAGAUGGAGAUGACGCAGAAGAG&CUCUUCU---AUUUUUCUAUUUUC	3	0.999999991505649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN15068_c0_g1_333_TPlot.pdf
TRINITY_DN15068_c0_g1:464	si_a784	TRINITY_DN15068_c0_g1	452	473	464	-24.70	-17.20	0.696356275303644	8	3-14,471-460;15-20,458-453	1-2,473-472[UP5];x-x,459-459[BULt];21-21,452-452[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	CAGAUAGCAGAAGUGGAAGAAC&ACUCUUCUAUUUUU-CUAUUUU	2	0.999997579529553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN15068_c0_g1_464_TPlot.pdf
TRINITY_DN15068_c0_g1:465	si_a547	TRINITY_DN15068_c0_g1	453	473	465	-26.90	-17.80	0.661710037174721	7.5	1-4,473-470;7-15,468-460;16-21,458-453	5-6,469-469[AILq];x-x,459-459[BULt]	((((((.(((((((((.-((((&))))..)))))))))-))))))	AGAUAGCAGAAGUGGAA-GAAC&GUUCAAUCUAUUUCU-UUAUCU	3	0.999985974189315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN15068_c0_g1_465_TPlot.pdf
TRINITY_DN15068_c0_g1:499	si_s294	TRINITY_DN15068_c0_g1	488	508	499	-32.60	-21.80	0.668711656441718	8.5	1-11,508-498;14-19,495-490	12-13,497-496[SIL];20-21,489-488[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	ACUCGCGAACUCGAUCGGCUA&UAGUCGAUUGGAAUUGCGAAA	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN15068_c0_g1_499_TPlot.pdf
TRINITY_DN15068_c0_g1:855	si_s806	TRINITY_DN15068_c0_g1	844	865	855	-28.60	-18.82	0.658041958041958	13	1-9,865-857;13-19,852-846	10-12,856-853[AILt];20-21,845-844[UP3]	..(((((((....(((((((((&)))))))))-...)))))))..	ACGAGGAGGCACUCGAGGAUGA&UUAUCUUCG-UUACCUUUUCUU	3	0.999999999999499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN15068_c0_g1_855_TPlot.pdf
TRINITY_DN15074_c0_g1:1093	si_a756	TRINITY_DN15074_c0_g1	1082	1102	1093	-33.10	-22.60	0.682779456193353	11	4-19,1099-1084	1-3,1102-1100[UP5];20-21,1083-1082[UP3]	..((((((((((((((((...&...))))))))))))))))..	UGCGGAGGCUCGAAGGAGACA&AACCUCCUUUGGGUUUUUGAU	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN15074_c0_g1_1093_TPlot.pdf
TRINITY_DN15075_c0_g1:660	si_a233	TRINITY_DN15075_c0_g1	647	669	660	-28.90	-18.88	0.653287197231834	12	2-11,668-659;14-21,654-647	1-1,669-669[UP5];12-13,658-655[AILt]	((((((((....((((((((((.&.))))))))))--..))))))))	GGAUUGAGCAAGGGUUAUGGGAU&UUUCUAUAAUC--AAUUCGAUCC	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN15075_c0_g1_660_TPlot.pdf
TRINITY_DN15075_c0_g2:1088	si_s481	TRINITY_DN15075_c0_g2	1077	1097	1088	-23.00	-16.20	0.704347826086956	12	1-13,1097-1085	14-21,1084-1077[UP3]	........(((((((((((((&)))))))))))))........	AAGACCUUUGGAUGUGGGAUC&GAUCCUAUAUUUAUUUAAAUA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN15075_c0_g2_1088_TPlot.pdf
TRINITY_DN15075_c0_g2:1156	si_s77	TRINITY_DN15075_c0_g2	1144	1165	1156	-25.50	-17.20	0.674509803921569	4	1-13,1165-1153;14-17,1151-1148;19-21,1146-1144	x-x,1152-1152[BULt];18-18,1147-1147[SIL]	(((.((((.(((((((((((((&)))))))))))))-)))).)))	GAAAAAAGAGAAAGAAGAAGAA&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN15075_c0_g2_1156_TPlot.pdf
TRINITY_DN15078_c0_g1:2585	si_s186	TRINITY_DN15078_c0_g1	2570	2594	2585	-31.90	-22.70	0.711598746081505	7	1-12,2594-2583;14-16,2581-2579;17-20,2574-2571	13-13,2582-2582[SIL];x-x,2578-2575[BULt];21-21,2570-2570[UP3]	.((((....(((.((((((((((((&)))))))))))).)))----)))).	ACCGAAGCAGAUCAUCGUUACUCGG&CCGAGUAACGAUUAUU----UUGGA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN15078_c0_g1_2585_TPlot.pdf
TRINITY_DN15079_c0_g1:545	si_a340	TRINITY_DN15079_c0_g1	534	554	545	-30.20	-20.00	0.662251655629139	10	1-2,554-553;5-16,550-539	3-4,552-551[SIL];17-21,538-534[UP3]	.....((((((((((((..((&))..)))))))))))).....	AAGGUUAUUUUUGGGACUUGG&CCUUGUCCCGAAAAUAUUAAU	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a340_TRINITY_DN15079_c0_g1_545_TPlot.pdf
TRINITY_DN15079_c0_g1:548	si_a337	TRINITY_DN15079_c0_g1	537	557	548	-30.80	-21.60	0.701298701298701	9.5	3-5,555-553;8-19,550-539	1-2,557-556[UP5];6-7,552-551[SIL];20-21,538-537[UP3]	..((((((((((((..(((..&..)))..))))))))))))..	GUUAUUUUUGGGACUUGGAUU&AUUCCUUGUCCCGAAAAUAUU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN15079_c0_g1_548_TPlot.pdf
TRINITY_DN15079_c0_g1:551	si_a334	TRINITY_DN15079_c0_g1	540	560	551	-30.70	-20.00	0.651465798045603	13.5	6-8,555-553;11-21,550-540	1-5,560-556[UP5];9-10,552-551[SIL]	(((((((((((..(((.....&.....)))..)))))))))))	AUUUUUGGGACUUGGAUUUGG&UUUAUUCCUUGUCCCGAAAAU	2	0.999105841890088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN15079_c0_g1_551_TPlot.pdf
TRINITY_DN15079_c0_g1:562	si_a848	TRINITY_DN15079_c0_g1	551	574	562	-31.30	-20.50	0.654952076677316	11	1-9,574-566;10-12,562-560;14-21,558-551	x-x,565-563[BULt];13-13,559-559[SIL]	((((((((.(((...(((((((((&)))))))))---))).))))))))	UUGGAUUUGGAGCGAUUGGCGAUU&AGUUGCUAA---CUUGAAAUCCAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN15079_c0_g1_562_TPlot.pdf
TRINITY_DN15082_c0_g1:1399	si_s55	TRINITY_DN15082_c0_g1	1388	1410	1399	-30.80	-20.90	0.678571428571428	9.5	1-4,1410-1407;6-18,1403-1391;20-20,1389-1389	5-5,1406-1404[AILt];19-19,1390-1390[SIL];21-21,1388-1388[UP3]	.(.(((((((((((((...((((&))))--.))))))))))))).).	CGUGGUUGCUGACUUGCGCAAUC&GAUU--UCAAGUUAGCAACUUCU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN15082_c0_g1_1399_TPlot.pdf
TRINITY_DN15082_c0_g1:1402	si_s52	TRINITY_DN15082_c0_g1	1391	1416	1402	-31.30	-20.46	0.653674121405751	19	1-4,1416-1413;9-21,1403-1391	5-8,1412-1404[AILt]	(((((((((((((.........((((&))))-----....)))))))))))))	GGUUGCUGACUUGCGCAAUCAGCCAA&UUGG-----AUUUCAAGUUAGCAACU	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN15082_c0_g1_1402_TPlot.pdf
TRINITY_DN15082_c0_g1:1423	si_a98	TRINITY_DN15082_c0_g1	1412	1432	1423	-26.40	-17.40	0.659090909090909	11	3-3,1430-1430;5-16,1428-1417	1-2,1432-1431[UP5];4-4,1429-1429[SIL];17-21,1416-1412[UP3]	.....((((((((((((.(..&..).)))))))))))).....	GCCAAUAUCUUCGUUGCGUGG&AAAGGUAACGAAGAUAAAAUA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN15082_c0_g1_1423_TPlot.pdf
TRINITY_DN15092_c0_g1:1125	si_s507	TRINITY_DN15092_c0_g1	1115	1134	1125	-22.70	-14.80	0.651982378854626	6.5	2-11,1133-1124;15-20,1121-1116	1-1,1134-1134[UP5];12-14,1123-1122[AILq];21-21,1115-1115[UP3]	.((((((..-((((((((((.&.))))))))))...)))))).	CUAGGAAGA-AGAAUUGUUUA&AAAACAAUUCUAUAUUCUUAA	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN15092_c0_g1_1125_TPlot.pdf
TRINITY_DN15098_c0_g1:522	si_s69	TRINITY_DN15098_c0_g1	511	531	522	-23.40	-15.50	0.662393162393162	12.5	5-10,527-522;13-21,519-511	1-4,531-528[UP5];11-12,521-520[SIL]	(((((((((..((((((....&....))))))..)))))))))	GAAAGAGAAUUAGUAGAUGAA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN15098_c0_g1_522_TPlot.pdf
TRINITY_DN1509_c0_g1:303	si_s814	TRINITY_DN1509_c0_g1	289	312	303	-26.60	-17.60	0.661654135338346	9	1-13,312-300;16-18,297-295;19-21,291-289	14-15,299-298[SIL];x-x,294-292[BULt]	(((...(((..(((((((((((((&)))))))))))))..)))---)))	UCAGAUUUAGAAGGAAAGGGUGGC&GUUACCUUUUCUUAAUAA---UGA	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN1509_c0_g1_303_TPlot.pdf
TRINITY_DN1509_c0_g1:489	si_a329	TRINITY_DN1509_c0_g1	477	498	489	-29.60	-19.40	0.655405405405405	9.5	2-8,497-491;10-12,489-487;13-20,485-478	1-1,498-498[UP5];9-9,490-490[SIL];x-x,486-486[BULt];21-21,477-477[UP3]	.((((((((.(((.(((((((.&.))))))).)))-)))))))).	AGGGACAGGAGGAGAGAAGAAC&AUUUUUUUAUUC-CUUGUCCCG	4	0.999999999571729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1509_c0_g1_489_TPlot.pdf
TRINITY_DN150_c0_g1:4139	si_a548	TRINITY_DN150_c0_g1	4128	4148	4139	-27.20	-18.70	0.6875	10	5-20,4144-4129	1-4,4148-4145[UP5];21-21,4128-4128[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAGGUAGAGAAAUGGAUAAGC&UUCAAUCUAUUUCUUUAUCUC	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN150_c0_g1_4139_TPlot.pdf
TRINITY_DN150_c0_g1:4140	si_a547	TRINITY_DN150_c0_g1	4129	4148	4140	-26.90	-19.00	0.706319702602231	7	1-3,4148-4146;6-21,4144-4129	4-5,4145-4145[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	AGGUAGAGAAAUGGAUA-AGC&GUUCAAUCUAUUUCUUUAUCU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN150_c0_g1_4140_TPlot.pdf
TRINITY_DN15104_c0_g1:829	si_s808	TRINITY_DN15104_c0_g1	818	838	829	-28.60	-19.60	0.685314685314685	11	4-17,835-822	1-3,838-836[UP5];18-21,821-818[UP3]	....((((((((((((((...&...))))))))))))))....	AACCGGGAAGGUGACGAAUUU&AUCUUCGUUACCUUUUCUUAA	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN15104_c0_g1_829_TPlot.pdf
TRINITY_DN15106_c0_g1:1258	si_s200	TRINITY_DN15106_c0_g1	1248	1266	1258	-32.80	-21.70	0.661585365853659	5	1-8,1266-1259;10-16,1258-1252;19-21,1250-1248	9-9,x-x[BULq];17-18,1251-1251[AILq]	(((.-(((((((-((((((((&)))))))).)))))))..)))	CACC-CUGGUAC-UUCCGAAA&UUUUGGAAUGUACCAGUUGUG	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN15106_c0_g1_1258_TPlot.pdf
TRINITY_DN15106_c0_g1:1261	si_s196	TRINITY_DN15106_c0_g1	1251	1270	1261	-29.30	-24.20	0.825938566552901	4	1-12,1270-1259;14-20,1258-1252	13-13,x-x[BULq];21-21,1251-1251[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	CCUGGUAC-UUCCGAAAUAGU&AUUAUUUUGGAAUGUACCAGU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN15106_c0_g1_1261_TPlot.pdf
TRINITY_DN15106_c0_g1:1545	si_s876	TRINITY_DN15106_c0_g1	1534	1554	1545	-24.20	-16.00	0.661157024793388	9	1-13,1554-1542	14-21,1541-1534[UP3]	........(((((((((((((&)))))))))))))........	UAAGACCCUUAGUUUUAAGAC&GUCUUAGAACUAAAAAUAAAU	0	0.0732256371295815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN15106_c0_g1_1545_TPlot.pdf
TRINITY_DN1510_c0_g1:642	si_a453	TRINITY_DN1510_c0_g1	631	651	642	-21.10	-15.00	0.710900473933649	9	2-16,650-636	1-1,651-651[UP5];17-21,635-631[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAGAAUAUAACGACGAUUGC&AUAAUUGUUGUUAUAUAUAAU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN1510_c0_g1_642_TPlot.pdf
TRINITY_DN1510_c0_g1:646	si_a472	TRINITY_DN1510_c0_g1	635	655	646	-21.50	-14.30	0.665116279069767	10.5	4-10,652-646;12-20,644-636	1-3,655-653[UP5];11-11,645-645[SIL];21-21,635-635[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AAUAUAACGACGAUUGCAAGG&AUAUGUAAUUAUUGUUAUAUA	4	0.999997346277844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1510_c0_g1_646_TPlot.pdf
TRINITY_DN15111_c0_g1:718	si_a180	TRINITY_DN15111_c0_g1	707	727	718	-32.10	-24.90	0.775700934579439	6	1-15,727-713;17-19,711-709	16-16,712-712[SIL];20-21,708-707[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	CCGGAUAGAUGUUAUCUGGGC&GUCUAGAUAAUAUCUUUCCCU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN15111_c0_g1_718_TPlot.pdf
TRINITY_DN15116_c0_g1:784	si_s503	TRINITY_DN15116_c0_g1	773	793	784	-24.00	-15.70	0.654166666666667	15.5	8-21,786-773	1-7,793-787[UP5]	((((((((((((((.......&.......))))))))))))))	GGGUAUGGAGUUGUACGCCAU&AAACAAAACAAUUCUAUAUUC	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s503_TRINITY_DN15116_c0_g1_784_TPlot.pdf
TRINITY_DN1511_c1_g1:1673	si_s488	TRINITY_DN1511_c1_g1	1662	1682	1673	-18.30	-11.90	0.650273224043716	6.5	2-13,1681-1670;15-19,1668-1664	1-1,1682-1682[UP5];14-14,1669-1669[SIL];20-21,1663-1662[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	GAGUUUGGAUUUGAGUAAAUC&UAUUUAUUUAAAUAUAAACAA	2	0.997697409833658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN1511_c1_g1_1673_TPlot.pdf
TRINITY_DN1511_c1_g1:1709	si_s81	TRINITY_DN1511_c1_g1	1697	1718	1709	-28.90	-25.20	0.8719723183391	6.5	1-14,1718-1705;15-21,1703-1697	x-x,1704-1704[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	AGAAGAGUGAGAGGAGGGGAGA&UUUUCUUUCCUUUC-UUCUUCU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1511_c1_g1_1709_TPlot.pdf
TRINITY_DN1511_c1_g1:1711	si_s84	TRINITY_DN1511_c1_g1	1697	1720	1711	-32.30	-24.10	0.746130030959752	9	2-15,1719-1706;16-20,1702-1698	1-1,1720-1720[UP5];x-x,1705-1703[BULt];21-21,1697-1697[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	AGAAGAGUGAGAGGAGGGGAGAGU&UCUUUCCUUUCUUCU---UCUUCG	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1511_c1_g1_1711_TPlot.pdf
TRINITY_DN1511_c1_g1:1715	si_a780	TRINITY_DN1511_c1_g1	1705	1724	1715	-27.30	-19.50	0.714285714285714	8	2-12,1723-1713;15-20,1711-1706	1-1,1724-1724[UP5];13-14,1712-1712[AILq];21-21,1705-1705[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	GAGAGGAG-GGGAGAGUUGGG&UUCAACUCUUCUAUUUUUCUA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1511_c1_g1_1715_TPlot.pdf
TRINITY_DN1511_c1_g1:1716	si_a779	TRINITY_DN1511_c1_g1	1706	1725	1716	-27.00	-19.10	0.707407407407407	8.5	3-13,1723-1713;16-21,1711-1706	1-2,1725-1724[UP5];14-15,1712-1712[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	AGAGGAG-GGGAGAGUUGGGA&AUUCAACUCUUCUAUUUUUCU	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1511_c1_g1_1716_TPlot.pdf
TRINITY_DN1511_c1_g1:1720	si_s68	TRINITY_DN1511_c1_g1	1709	1729	1720	-23.10	-15.70	0.67965367965368	11	3-9,1727-1721;11-21,1719-1709	1-2,1729-1728[UP5];10-10,1720-1720[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GGAGGGGAGAGUUGGGAGUGU&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1511_c1_g1_1720_TPlot.pdf
TRINITY_DN1511_c1_g1:2203	si_a121	TRINITY_DN1511_c1_g1	2192	2215	2203	-29.30	-19.34	0.660068259385665	12.5	1-9,2215-2207;11-15,2202-2198;18-21,2195-2192	10-10,2206-2203[AILt];16-17,2197-2196[SIL]	((((..(((((....(((((((((&)))))))))---.)))))..))))	GCUAGGGCUGUUUAUAAACAGGCU&AGCUUGUUU---UAUAGCAAUAGU	4	0.996910853773391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN1511_c1_g1_2203_TPlot.pdf
TRINITY_DN1511_c1_g1:2549	si_a784	TRINITY_DN1511_c1_g1	2528	2558	2549	-24.70	-16.10	0.651821862348178	26.5	2-11,2557-2548;12-21,2537-2528	1-1,2558-2558[UP5];x-x,2547-2538[BULt]	((((((((((..........((((((((((.&.))))))))))----------))))))))))	GAAGUGGAAGCACCUCAAGUGGUGGAAGAGC&ACUCUUCUAUU----------UUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1511_c1_g1_2549_TPlot.pdf
TRINITY_DN1511_c1_g1:431	si_a67	TRINITY_DN1511_c1_g1	420	440	431	-27.20	-17.70	0.650735294117647	9	1-11,440-430;13-16,428-425	12-12,429-429[SIL];17-21,424-420[UP3]	.....((((.(((((((((((&))))))))))).)))).....	CAAACGCGACUUGGAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1511_c1_g1_431_TPlot.pdf
TRINITY_DN1511_c1_g1:432	si_a66	TRINITY_DN1511_c1_g1	421	441	432	-26.70	-18.00	0.674157303370786	8	2-12,440-430;14-17,428-425	1-1,441-441[UP5];13-13,429-429[SIL];18-21,424-421[UP3]	....((((.(((((((((((.&.))))))))))).))))....	AAACGCGACUUGGAAGAAGCC&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999971337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1511_c1_g1_432_TPlot.pdf
TRINITY_DN1511_c1_g1:4844	si_s823	TRINITY_DN1511_c1_g1	4833	4853	4844	-22.20	-14.90	0.671171171171171	6.5	2-12,4852-4842;14-20,4840-4834	1-1,4853-4853[UP5];13-13,4841-4841[SIL];21-21,4833-4833[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	CGUUGUUUAUUGUUGUUAAGG&UCUUAAUAAUGAAAAACAAUU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN1511_c1_g1_4844_TPlot.pdf
TRINITY_DN1511_c2_g1:39	si_a479	TRINITY_DN1511_c2_g1	24	49	39	-23.00	-15.10	0.656521739130435	6	1-8,49-42;9-17,40-32;18-21,27-24	x-x,41-41[BULt];x-x,31-28[BULt]	((((....(((((((((.((((((((&))))))))-)))))))))----))))	CAUAAAUUUUCUAUAUAUACAAUAAU&AUUAUUGU-UAUAUAGAA----UAUG	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN1511_c2_g1_39_TPlot.pdf
TRINITY_DN1511_c2_g1:40	si_a478	TRINITY_DN1511_c2_g1	29	50	40	-21.30	-15.60	0.732394366197183	5	1-9,50-42;10-18,40-32	x-x,41-41[BULt];19-21,31-29[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AUUUUCUAUAUAUACAAUAAUU&AAUUAUUGU-UAUAUAGAAUAU	0	0.0722978481116012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN1511_c2_g1_40_TPlot.pdf
TRINITY_DN1511_c2_g1:42	si_a477	TRINITY_DN1511_c2_g1	30	51	42	-21.50	-16.70	0.776744186046512	4	1-10,51-42;11-19,40-32	x-x,41-41[BULt];20-21,31-30[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	UUUUCUAUAUAUACAAUAAUUA&UAAUUAUUGU-UAUAUAGAAUA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN1511_c2_g1_42_TPlot.pdf
TRINITY_DN1511_c2_g1:43	si_a476	TRINITY_DN1511_c2_g1	31	52	43	-22.90	-18.00	0.786026200873363	3.5	1-11,52-42;12-20,40-32	x-x,41-41[BULt];21-21,31-31[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	UUUCUAUAUAUACAAUAAUUAU&GUAAUUAUUGU-UAUAUAGAAU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN1511_c2_g1_43_TPlot.pdf
TRINITY_DN1511_c2_g1:44	si_a475	TRINITY_DN1511_c2_g1	32	53	44	-23.50	-17.90	0.761702127659574	4	2-12,52-42;13-21,40-32	1-1,53-53[UP5];x-x,41-41[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	UUCUAUAUAUACAAUAAUUAUU&UGUAAUUAUUGU-UAUAUAGAA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN1511_c2_g1_44_TPlot.pdf
TRINITY_DN1511_c2_g1:45	si_a474	TRINITY_DN1511_c2_g1	33	54	45	-23.60	-17.00	0.720338983050847	5	3-13,52-42;14-21,40-33	1-2,54-53[UP5];x-x,41-41[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UCUAUAUAUACAAUAAUUAUUA&AUGUAAUUAUUGU-UAUAUAGA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN1511_c2_g1_45_TPlot.pdf
TRINITY_DN15124_c0_g4:843	si_a144	TRINITY_DN15124_c0_g4	832	852	843	-27.40	-17.90	0.653284671532847	10.5	5-12,848-841;14-21,839-832	1-4,852-849[UP5];13-13,840-840[SIL]	((((((((.((((((((....&....)))))))).))))))))	CCUUGGAGAAACGACGAAGAA&UUAAUCGUUGUUGUUUUAAGG	2	0.999229893489761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN15124_c0_g4_843_TPlot.pdf
TRINITY_DN15124_c0_g4:953	si_a544	TRINITY_DN15124_c0_g4	942	961	953	-28.90	-20.60	0.71280276816609	7.5	1-7,961-955;11-20,952-943	8-10,954-953[AILq];21-21,942-942[UP3]	.((((((((((..-(((((((&)))))))...)))))))))).	AAAGGAAAUAGUG-GAACCGA&UCGGUUCAAUCUAUUUCUUUA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN15124_c0_g4_953_TPlot.pdf
TRINITY_DN15129_c0_g1:187	si_a319	TRINITY_DN15129_c0_g1	176	196	187	-22.40	-14.80	0.660714285714286	6.5	1-3,196-194;5-14,192-183;16-19,181-178	4-4,193-193[SIL];15-15,182-182[SIL];20-21,177-176[UP3]	..((((.((((((((((.(((&))).)))))))))).))))..	ACUGAAUAAAUCAUGGAAGAA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN15129_c0_g1_187_TPlot.pdf
TRINITY_DN15136_c1_g1:180	si_a76	TRINITY_DN15136_c1_g1	169	189	180	-21.20	-14.40	0.679245283018868	12	3-8,187-182;11-21,179-169	1-2,189-188[UP5];9-10,181-180[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	CUUAGUGAUGAUUGAUGGUGC&AAAUUGUUUUUCAUUAUUAAG	4	0.999999992133814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN15136_c1_g1_180_TPlot.pdf
TRINITY_DN15136_c1_g1:337	si_a404	TRINITY_DN15136_c1_g1	325	346	337	-21.70	-14.40	0.663594470046083	6	1-10,346-337;11-14,335-332;16-20,330-326	x-x,336-336[BULt];15-15,331-331[SIL];21-21,325-325[UP3]	.(((((.((((.((((((((((&))))))))))-)))).))))).	AAAAUAAAAACAAAAGCGAUUC&GAAUUGUUUU-GUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN15136_c1_g1_337_TPlot.pdf
TRINITY_DN15139_c0_g1:1784	si_a896	TRINITY_DN15139_c0_g1	1773	1793	1784	-21.60	-15.10	0.699074074074074	7	3-14,1791-1780;16-19,1778-1775	1-2,1793-1792[UP5];15-15,1779-1779[SIL];20-21,1774-1773[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	AAGUGUAACUUAUUAUUACAU&UAGUAAUAAUAAGUAAUAUAA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN15139_c0_g1_1784_TPlot.pdf
TRINITY_DN15139_c0_g1:3122	si_s38	TRINITY_DN15139_c0_g1	3111	3131	3122	-22.70	-17.10	0.753303964757709	5	1-13,3131-3119;15-18,3117-3114	14-14,3118-3118[SIL];19-21,3113-3111[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AUCCCAACUAUUGAAGAUUUA&UAAAUCUUUAAUAAUUGGAUU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN15139_c0_g1_3122_TPlot.pdf
TRINITY_DN15139_c0_g1:4381	si_a222	TRINITY_DN15139_c0_g1	4370	4390	4381	-25.20	-17.00	0.674603174603175	12.5	5-18,4386-4373	1-4,4390-4387[UP5];19-21,4372-4370[UP3]	...((((((((((((((....&....))))))))))))))...	UUAAUAGAGAUGUGAGUAGCC&UUAAACUCAUGUUUCUAUAAU	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN15139_c0_g1_4381_TPlot.pdf
TRINITY_DN1513_c0_g2:31	si_s219	TRINITY_DN1513_c0_g2	20	40	31	-33.80	-22.10	0.653846153846154	9	1-5,40-36;7-16,34-25	6-6,35-35[SIL];17-21,24-20[UP3]	.....((((((((((.(((((&))))).)))))))))).....	AAAAACACGUGGUUUGGAAUA&UGUUCGAAACCGCGUGAAUAA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN1513_c0_g2_31_TPlot.pdf
TRINITY_DN1513_c2_g1:1186	si_s50	TRINITY_DN1513_c2_g1	1175	1195	1186	-29.00	-23.30	0.803448275862069	5	3-21,1193-1175	1-2,1195-1194[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUGUUAAUUUGAAAUCCGAGU&AAUUGGAUUUCAAGUUAGCAA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN1513_c2_g1_1186_TPlot.pdf
TRINITY_DN1513_c2_g1:1603	si_a673	TRINITY_DN1513_c2_g1	1592	1612	1603	-34.80	-23.06	0.66264367816092	10	1-9,1612-1604;14-21,1599-1592	10-13,1603-1600[SIL]	((((((((....(((((((((&)))))))))....))))))))	ACUGUGUGUAGUGGGAAUCGA&UUGAUUCCUUAUUCACGCGGU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a673_TRINITY_DN1513_c2_g1_1603_TPlot.pdf
TRINITY_DN1513_c2_g1:794	si_a356	TRINITY_DN1513_c2_g1	783	803	794	-26.90	-18.80	0.698884758364312	7	2-9,802-795;11-15,793-789;17-20,787-784	1-1,803-803[UP5];10-10,794-794[SIL];16-16,788-788[SIL];21-21,783-783[UP3]	.((((.(((((.((((((((.&.)))))))).))))).)))).	UUCCGUUCAAAUUGGAGUUAG&UUAAUUCUAUUUUGAUCGGAU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN1513_c2_g1_794_TPlot.pdf
TRINITY_DN1513_c2_g1:953	si_a333	TRINITY_DN1513_c2_g1	942	962	953	-30.60	-21.30	0.696078431372549	10	1-9,962-954;12-18,951-945	10-11,953-952[SIL];19-21,944-942[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	CACUUGGGACUUGGGAUAAGG&UUUUAUUCCUUGUCCCGAAAA	1	0.0501932502680562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN1513_c2_g1_953_TPlot.pdf
TRINITY_DN15141_c0_g1:466	si_a455	TRINITY_DN15141_c0_g1	455	475	466	-21.10	-14.10	0.66824644549763	13	3-16,473-460	1-2,475-474[UP5];17-21,459-455[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGAUCGUGUAUGACGGCGACA&AAUUGUUGUUAUAUAUAAUAU	4	0.999999955453596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN15141_c0_g1_466_TPlot.pdf
TRINITY_DN1514_c0_g1:2863	si_a323	TRINITY_DN1514_c0_g1	2853	2872	2863	-26.80	-17.70	0.66044776119403	7	1-7,2872-2866;9-14,2864-2859;18-21,2856-2853	8-8,2865-2865[SIL];15-17,2858-2857[AILq]	((((..-((((((.(((((((&))))))).))))))...))))	GAGGUG-GAAGAAUUCAUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.999999980890326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1514_c0_g1_2863_TPlot.pdf
TRINITY_DN1514_c0_g1:3885	si_a178	TRINITY_DN1514_c0_g1	3874	3894	3885	-32.90	-23.80	0.723404255319149	5.5	1-4,3894-3891;7-20,3888-3875	5-6,3890-3889[SIL];21-21,3874-3874[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGGAAGAUAUUAUCUUCACGG&CCGUCUAGAUAAUAUCUUUCC	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN1514_c0_g1_3885_TPlot.pdf
TRINITY_DN1514_c0_g1:3887	si_a176	TRINITY_DN1514_c0_g1	3876	3896	3887	-31.70	-24.50	0.772870662460568	5.5	2-6,3895-3891;9-21,3888-3876	1-1,3896-3896[UP5];7-8,3890-3889[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	GAAGAUAUUAUCUUCACGGGA&ACCCGUCUAGAUAAUAUCUUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN1514_c0_g1_3887_TPlot.pdf
TRINITY_DN1514_c0_g1:4138	si_s72	TRINITY_DN1514_c0_g1	4127	4147	4138	-24.10	-17.80	0.738589211618257	9.5	6-21,4142-4127	1-5,4147-4143[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAGAGAAAAAAAAGACAA&UUCUAUUUUUUUUCUUUCCUU	4	0.99999999978329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1514_c0_g1_4138_TPlot.pdf
TRINITY_DN1514_c0_g1:4243	si_a784	TRINITY_DN1514_c0_g1	4232	4251	4243	-24.70	-16.70	0.676113360323887	10	2-8,4250-4244;10-19,4243-4234	1-1,4251-4251[UP5];9-9,x-x[BULq];20-21,4233-4232[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	ACAGUAGGAGGA-GGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1514_c0_g1_4243_TPlot.pdf
TRINITY_DN1514_c0_g1:4246	si_s808	TRINITY_DN1514_c0_g1	4235	4256	4246	-28.60	-18.80	0.657342657342657	11.5	2-6,4255-4251;8-9,4249-4248;11-20,4245-4236	1-1,4256-4256[UP5];7-7,4250-4250[SIL];10-10,4247-4246[AILt];21-21,4235-4235[UP3]	.((((((((((..((.(((((.&.))))).))-.)))))))))).	GUAGGAGGAGGAGGAGGAGGAC&AUCUUCGUU-ACCUUUUCUUAA	3	0.999999999995159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1514_c0_g1_4246_TPlot.pdf
TRINITY_DN1514_c0_g1:4247	si_s82	TRINITY_DN1514_c0_g1	4236	4257	4247	-28.90	-20.90	0.72318339100346	11	3-8,4255-4250;9-20,4248-4237	1-2,4257-4256[UP5];x-x,4249-4249[BULt];21-21,4236-4236[UP3]	.((((((((((((.((((((..&..))))))-)))))))))))).	UAGGAGGAGGAGGAGGAGGACA&UUUCUUUC-CUUUCUUCUUCUU	4	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1514_c0_g1_4247_TPlot.pdf
TRINITY_DN1514_c0_g1:4248	si_s81	TRINITY_DN1514_c0_g1	4237	4258	4248	-28.90	-20.90	0.72318339100346	11.5	4-9,4255-4250;10-21,4248-4237	1-3,4258-4256[UP5];x-x,4249-4249[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AGGAGGAGGAGGAGGAGGACAU&UUUUCUUUC-CUUUCUUCUUCU	4	0.999999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1514_c0_g1_4248_TPlot.pdf
TRINITY_DN1514_c0_g1:4249	si_a498	TRINITY_DN1514_c0_g1	4238	4257	4249	-33.50	-22.30	0.665671641791045	9	1-4,4257-4254;6-11,4253-4248;13-20,4246-4239	5-5,x-x[BULq];12-12,4247-4247[SIL];21-21,4238-4238[UP3]	.((((((((.((((((-((((&)))).)))))).)))))))).	GGAGGAGGAGGAGGAG-GACA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999996852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1514_c0_g1_4249_TPlot.pdf
TRINITY_DN1514_c0_g1:4250	si_a497	TRINITY_DN1514_c0_g1	4239	4258	4250	-32.00	-23.50	0.734375	7	1-5,4258-4254;7-12,4253-4248;14-21,4246-4239	6-6,x-x[BULq];13-13,4247-4247[SIL]	((((((((.((((((-(((((&))))).)))))).))))))))	GAGGAGGAGGAGGAG-GACAU&AUGUCGUUUUUCGUCUUCCUU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1514_c0_g1_4250_TPlot.pdf
TRINITY_DN1514_c0_g1:4251	si_a496	TRINITY_DN1514_c0_g1	4240	4259	4251	-32.40	-23.00	0.709876543209877	7	1-6,4259-4254;8-13,4253-4248;15-21,4246-4240	7-7,x-x[BULq];14-14,4247-4247[SIL]	(((((((.((((((-((((((&)))))).)))))).)))))))	AGGAGGAGGAGGAG-GACAUG&UAUGUCGUUUUUCGUCUUCCU	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1514_c0_g1_4251_TPlot.pdf
TRINITY_DN1514_c0_g1:4252	si_a495	TRINITY_DN1514_c0_g1	4241	4260	4252	-31.90	-21.70	0.68025078369906	8.5	2-7,4259-4254;9-14,4253-4248;16-21,4246-4241	1-1,4260-4260[UP5];8-8,x-x[BULq];15-15,4247-4247[SIL]	((((((.((((((-((((((.&.)))))).)))))).))))))	GGAGGAGGAGGAG-GACAUGG&AUAUGUCGUUUUUCGUCUUCC	4	0.999999577348245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1514_c0_g1_4252_TPlot.pdf
TRINITY_DN1514_c0_g1:4253	si_a323	TRINITY_DN1514_c0_g1	4242	4261	4253	-26.80	-18.40	0.686567164179104	7.5	1-6,4261-4256;8-14,4255-4249;16-21,4247-4242	7-7,x-x[BULq];15-15,4248-4248[SIL]	((((((.(((((((-((((((&)))))).))))))).))))))	GAGGAGGAGGAGGA-CAUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1514_c0_g1_4253_TPlot.pdf
TRINITY_DN1514_c0_g1:4255	si_s312	TRINITY_DN1514_c0_g1	4244	4266	4255	-29.00	-19.40	0.668965517241379	12.5	3-8,4264-4259;9-17,4256-4248;19-20,4246-4245	1-2,4266-4265[UP5];x-x,4258-4257[BULt];18-18,4247-4247[SIL];21-21,4244-4244[UP3]	.((.(((((((((..((((((..&..))))))--))))))))).)).	GGAGGAGGAGGACAUGGAGUUGU&AAAAUUCU--GUCCUUCUUGUUA	2	0.999998961659464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1514_c0_g1_4255_TPlot.pdf
TRINITY_DN1514_c0_g1:4256	si_s67	TRINITY_DN1514_c0_g1	4245	4266	4256	-25.60	-17.00	0.6640625	11	1-8,4266-4259;11-21,4255-4245	9-10,4258-4256[AILt]	(((((((((((...((((((((&))))))))-..)))))))))))	GAGGAGGAGGACAUGGAGUUGU&GCAACUUC-UAUUUUUUUUCUU	2	0.99999990716477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1514_c0_g1_4256_TPlot.pdf
TRINITY_DN1514_c0_g1:4259	si_s508	TRINITY_DN1514_c0_g1	4248	4268	4259	-22.80	-15.10	0.662280701754386	10	3-12,4266-4257;14-18,4255-4251	1-2,4268-4267[UP5];13-13,4256-4256[SIL];19-21,4250-4248[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	GAGGAGGACAUGGAGUUGUAG&AAACAAUUCUAUAUUCUUAAU	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN1514_c0_g1_4259_TPlot.pdf
TRINITY_DN1514_c0_g2:1213	si_a319	TRINITY_DN1514_c0_g2	1201	1222	1213	-22.40	-15.30	0.683035714285714	11.5	5-11,1218-1212;12-21,1210-1201	1-4,1222-1219[UP5];x-x,1211-1211[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	GGUGGAAGAAUUCAUGGAAAUA&UUUAUCCAUGA-UUUUUUUAUU	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1514_c0_g2_1213_TPlot.pdf
TRINITY_DN1514_c0_g2:3613	si_a661	TRINITY_DN1514_c0_g2	3602	3632	3613	-35.80	-23.70	0.662011173184358	24.5	2-9,3631-3624;10-20,3613-3603	1-1,3632-3632[UP5];x-x,3623-3614[BULt];21-21,3602-3602[UP3]	.(((((((((((..........((((((((.&.))))))))----------))))))))))).	UGGAAUCAGUGGAAAUGGAUUAGCGUUUCCG&GGGAAAUGC----------CUAUUGAUUCCU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a661_TRINITY_DN1514_c0_g2_3613_TPlot.pdf
TRINITY_DN1514_c0_g2:3649	si_a178	TRINITY_DN1514_c0_g2	3638	3658	3649	-32.90	-23.80	0.723404255319149	5.5	1-4,3658-3655;7-20,3652-3639	5-6,3654-3653[SIL];21-21,3638-3638[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGGAAGAUAUUAUCUUCACGG&CCGUCUAGAUAAUAUCUUUCC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN1514_c0_g2_3649_TPlot.pdf
TRINITY_DN1514_c0_g2:4001	si_s74	TRINITY_DN1514_c0_g2	3990	4010	4001	-25.00	-21.90	0.876	5.5	4-21,4007-3990	1-3,4010-4008[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAAGGAGAGAAAAAAAAGAC&CUAUUUUUUUUCUUUCCUUUC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1514_c0_g2_4001_TPlot.pdf
TRINITY_DN1514_c0_g2:4002	si_s73	TRINITY_DN1514_c0_g2	3991	4011	4002	-24.00	-18.70	0.779166666666667	7.5	5-21,4007-3991	1-4,4011-4008[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGAGAGAAAAAAAAGACA&UCUAUUUUUUUUCUUUCCUUU	3	0.999962937540519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1514_c0_g2_4002_TPlot.pdf
TRINITY_DN1514_c0_g2:4111	si_s808	TRINITY_DN1514_c0_g2	4100	4121	4111	-28.60	-18.80	0.657342657342657	11.5	2-6,4120-4116;8-9,4114-4113;11-20,4110-4101	1-1,4121-4121[UP5];7-7,4115-4115[SIL];10-10,4112-4111[AILt];21-21,4100-4100[UP3]	.((((((((((..((.(((((.&.))))).))-.)))))))))).	GUAGGAGGAGGAGGAGGAGGAC&AUCUUCGUU-ACCUUUUCUUAA	4	0.999999999999009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1514_c0_g2_4111_TPlot.pdf
TRINITY_DN1514_c0_g2:4123	si_s509	TRINITY_DN1514_c0_g2	4112	4132	4123	-22.80	-15.10	0.662280701754386	10	2-11,4131-4122;13-17,4120-4116	1-1,4132-4132[UP5];12-12,4121-4121[SIL];18-21,4115-4112[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	GGAGGAGGACAUGGAGUUGUA&AACAAUUCUAUAUUCUUAAUU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN1514_c0_g2_4123_TPlot.pdf
TRINITY_DN1514_c0_g2:625	si_s83	TRINITY_DN1514_c0_g2	614	634	625	-30.90	-22.20	0.718446601941748	8.5	1-17,634-618	18-21,617-614[UP3]	....(((((((((((((((((&)))))))))))))))))....	GCCAAAGAGGAGGGGGAGGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.99999999998369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1514_c0_g2_625_TPlot.pdf
TRINITY_DN1514_c0_g2:632	si_s71	TRINITY_DN1514_c0_g2	621	640	632	-25.70	-20.20	0.785992217898833	8	1-5,640-636;7-21,635-621	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	AGGAGGGGGAGGAAG-AGGAG&CUUCUAUUUUUUUUCUUUCCU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1514_c0_g2_632_TPlot.pdf
TRINITY_DN1514_c0_g2:637	si_s86	TRINITY_DN1514_c0_g2	626	650	637	-32.90	-21.80	0.662613981762918	15	2-5,649-646;6-18,641-629;20-21,627-626	1-1,650-650[UP5];x-x,645-642[BULt];19-19,628-628[SIL]	((.(((((((((((((....((((.&.))))----))))))))))))).))	GGGGAGGAAGAGGAGGCGAUGGAGU&UUUCC----UUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1514_c0_g2_637_TPlot.pdf
TRINITY_DN1514_c0_g2:640	si_s810	TRINITY_DN1514_c0_g2	629	649	640	-27.90	-18.20	0.652329749103943	10.5	1-7,649-643;9-17,641-633	8-8,642-642[SIL];18-21,632-629[UP3]	....(((((((((.(((((((&))))))).)))))))))....	GAGGAAGAGGAGGCGAUGGAG&CUUCGUUACCUUUUCUUAAUA	2	0.999999302779082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1514_c0_g2_640_TPlot.pdf
TRINITY_DN1514_c0_g2:641	si_s67	TRINITY_DN1514_c0_g2	630	653	641	-25.60	-16.72	0.653125	14.5	1-8,653-646;11-21,640-630	9-10,645-641[AILt]	(((((((((((.....((((((((&))))))))---..)))))))))))	AGGAAGAGGAGGCGAUGGAGUUGU&GCAACUUC---UAUUUUUUUUCUU	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1514_c0_g2_641_TPlot.pdf
TRINITY_DN1514_c0_g2:738	si_s89	TRINITY_DN1514_c0_g2	727	747	738	-35.30	-28.50	0.807365439093484	7.5	1-17,747-731	18-21,730-727[UP3]	....(((((((((((((((((&)))))))))))))))))....	GCGCGCGGAGGAGAAGGAGGG&CCUUUCUUCUUCUUCGCUUCG	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1514_c0_g2_738_TPlot.pdf
TRINITY_DN1514_c0_g2:739	si_s88	TRINITY_DN1514_c0_g2	728	748	739	-34.80	-28.70	0.824712643678161	7	1-18,748-731	19-21,730-728[UP3]	...((((((((((((((((((&))))))))))))))))))...	CGCGCGGAGGAGAAGGAGGGG&UCCUUUCUUCUUCUUCGCUUC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1514_c0_g2_739_TPlot.pdf
TRINITY_DN1514_c0_g2:740	si_s87	TRINITY_DN1514_c0_g2	729	749	740	-32.90	-28.70	0.872340425531915	7	2-19,748-731	1-1,749-749[UP5];20-21,730-729[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GCGCGGAGGAGAAGGAGGGGU&UUCCUUUCUUCUUCUUCGCUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1514_c0_g2_740_TPlot.pdf
TRINITY_DN1514_c0_g2:742	si_s85	TRINITY_DN1514_c0_g2	731	752	742	-33.80	-28.50	0.843195266272189	9	1-2,752-751;4-21,748-731	3-3,750-749[AILt]	((((((((((((((((((..((&))-.))))))))))))))))))	GCGGAGGAGAAGGAGGGGUUGG&CU-UUCCUUUCUUCUUCUUCGC	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1514_c0_g2_742_TPlot.pdf
TRINITY_DN1514_c0_g2:743	si_s84	TRINITY_DN1514_c0_g2	732	753	743	-32.30	-26.70	0.826625386996904	9	1-3,753-751;5-21,748-732	4-4,750-749[AILt]	(((((((((((((((((..(((&)))-.)))))))))))))))))	CGGAGGAGAAGGAGGGGUUGGA&UCU-UUCCUUUCUUCUUCUUCG	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1514_c0_g2_743_TPlot.pdf
TRINITY_DN1514_c0_g2:745	si_a779	TRINITY_DN1514_c0_g2	735	754	745	-27.00	-19.70	0.72962962962963	6.5	2-13,753-742;15-21,741-735	1-1,754-754[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	AGGAGAA-GGAGGGGUUGGAA&AUUCAACUCUUCUAUUUUUCU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1514_c0_g2_745_TPlot.pdf
TRINITY_DN1514_c0_g2:80	si_a350	TRINITY_DN1514_c0_g2	69	89	80	-20.30	-13.20	0.650246305418719	12.5	5-9,85-81;11-21,79-69	1-4,89-86[UP5];10-10,80-80[SIL]	(((((((((((.(((((....&....))))).)))))))))))	UCGAGAUGGAAAUGGUAAUUG&AAAAUAUUAAUUCUAUUUUGA	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1514_c0_g2_80_TPlot.pdf
TRINITY_DN1514_c0_g2:834	si_s87	TRINITY_DN1514_c0_g2	820	844	834	-32.90	-22.00	0.668693009118541	10	1-6,844-839;8-17,836-827;18-21,823-820	7-7,838-837[AILt];x-x,826-824[BULt]	((((...((((((((((..((((((&))))))-.))))))))))---))))	GGGCAAAGAAGAGGAGGUCAAGGAA&UUCCUU-UCUUCUUCUUC---GCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1514_c0_g2_834_TPlot.pdf
TRINITY_DN1514_c0_g2:965	si_a353	TRINITY_DN1514_c0_g2	954	973	965	-24.00	-19.30	0.804166666666667	6	2-8,972-966;10-21,965-954	1-1,973-973[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	CGGUCAAGAUGG-AUUAGUAA&AUAUUAAUUCUAUUUUGAUCG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN1514_c0_g2_965_TPlot.pdf
TRINITY_DN15150_c0_g1:175	si_a83	TRINITY_DN15150_c0_g1	164	184	175	-24.50	-16.40	0.669387755102041	5.5	1-20,184-165	21-21,164-164[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GUUUUUUUUUAAUAGUGAGGA&UUUUCAUUAUUAAGAAAAGGU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN15150_c0_g1_175_TPlot.pdf
TRINITY_DN15150_c0_g1:176	si_a82	TRINITY_DN15150_c0_g1	165	185	176	-23.70	-16.80	0.708860759493671	5	1-21,185-165	NA	(((((((((((((((((((((&)))))))))))))))))))))	UUUUUUUUUAAUAGUGAGGAG&UUUUUCAUUAUUAAGAAAAGG	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN15150_c0_g1_176_TPlot.pdf
TRINITY_DN1515_c0_g1:1022	si_a314	TRINITY_DN1515_c0_g1	1008	1031	1022	-27.10	-20.00	0.738007380073801	7.5	3-15,1029-1017;16-21,1013-1008	1-2,1031-1030[UP5];x-x,1016-1014[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	AGAAAUGGACAUGGAUAAGUCCCG&UUGGAUUUAUCCAUG---AUUUUU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN1515_c0_g1_1022_TPlot.pdf
TRINITY_DN1515_c0_g1:1023	si_a313	TRINITY_DN1515_c0_g1	1012	1032	1023	-28.70	-19.80	0.689895470383275	11	4-16,1029-1017	1-3,1032-1030[UP5];17-21,1016-1012[UP3]	.....(((((((((((((...&...))))))))))))).....	AUGGACAUGGAUAAGUCCCGA&CUUGGAUUUAUCCAUGAUUUU	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN1515_c0_g1_1023_TPlot.pdf
TRINITY_DN1515_c0_g1:1706	si_s75	TRINITY_DN1515_c0_g1	1694	1715	1706	-24.00	-18.50	0.770833333333333	5	1-8,1715-1708;10-16,1706-1700;17-21,1698-1694	9-9,1707-1707[SIL];x-x,1699-1699[BULt]	(((((.(((((((.((((((((&)))))))).)))))))-)))))	GGAAAUGGAGAGACGAAAAAUA&UAUUUUUUUUCUUUCC-UUUCU	4	0.999999896158245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1515_c0_g1_1706_TPlot.pdf
TRINITY_DN1515_c0_g1:2616	si_a446	TRINITY_DN1515_c0_g1	2606	2624	2616	-25.50	-16.60	0.650980392156863	7	1-9,2624-2616;12-21,2615-2606	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GUGAUGACAA--AUCUCGUAU&AUAUGAGAUAAUUGUUGUUAU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN1515_c0_g1_2616_TPlot.pdf
TRINITY_DN1515_c0_g1:2737	si_s72	TRINITY_DN1515_c0_g1	2722	2746	2737	-24.10	-15.90	0.659751037344398	7.5	1-15,2746-2732;16-18,2728-2726;19-21,2724-2722	x-x,2731-2729[BULt];x-x,2725-2725[BULt]	(((.(((...(((((((((((((((&)))))))))))))))---)))-)))	AAGAGAACUGGGAAGAAGAAUAGGA&UUCUAUUUUUUUUCU---UUC-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1515_c0_g1_2737_TPlot.pdf
TRINITY_DN1515_c0_g1:298	si_a405	TRINITY_DN1515_c0_g1	287	307	298	-19.80	-13.20	0.666666666666667	9	1-7,307-301;9-19,299-289	8-8,300-300[SIL];20-21,288-287[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	CCAAGUAUGAAUAUGGCGAUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1515_c0_g1_298_TPlot.pdf
TRINITY_DN1515_c0_g1:299	si_a404	TRINITY_DN1515_c0_g1	288	308	299	-21.70	-14.50	0.668202764976959	8.5	1-8,308-301;10-20,299-289	9-9,300-300[SIL];21-21,288-288[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	CAAGUAUGAAUAUGGCGAUUU&GAAUUGUUUUGUUUAUAUUUA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1515_c0_g1_299_TPlot.pdf
TRINITY_DN1515_c0_g1:3109	si_a324	TRINITY_DN1515_c0_g1	3098	3118	3109	-27.50	-18.70	0.68	6	1-14,3118-3105;16-18,3103-3101	15-15,3104-3104[SIL];19-21,3100-3098[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	GAUGGACUAAAAAGAUUAUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN1515_c0_g1_3109_TPlot.pdf
TRINITY_DN1515_c0_g1:3110	si_a323	TRINITY_DN1515_c0_g1	3099	3119	3110	-26.80	-20.30	0.757462686567164	5	1-15,3119-3105;17-19,3103-3101	16-16,3104-3104[SIL];20-21,3100-3099[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AUGGACUAAAAAGAUUAUGGA&UCCAUGAUUUUUUUAUUCCUU	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1515_c0_g1_3110_TPlot.pdf
TRINITY_DN1515_c0_g1:3111	si_a322	TRINITY_DN1515_c0_g1	3100	3120	3111	-27.00	-20.30	0.751851851851852	5	2-16,3119-3105;18-20,3103-3101	1-1,3120-3120[UP5];17-17,3104-3104[SIL];21-21,3100-3100[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UGGACUAAAAAGAUUAUGGAG&AUCCAUGAUUUUUUUAUUCCU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN1515_c0_g1_3111_TPlot.pdf
TRINITY_DN1515_c0_g1:3112	si_a321	TRINITY_DN1515_c0_g1	3101	3121	3112	-26.70	-19.90	0.745318352059925	6	3-17,3119-3105;19-21,3103-3101	1-2,3121-3120[UP5];18-18,3104-3104[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GGACUAAAAAGAUUAUGGAGU&UAUCCAUGAUUUUUUUAUUCC	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1515_c0_g1_3112_TPlot.pdf
TRINITY_DN1515_c0_g1:3113	si_a320	TRINITY_DN1515_c0_g1	3102	3122	3113	-24.40	-16.80	0.688524590163935	8	4-18,3119-3105;20-21,3103-3102	1-3,3122-3120[UP5];19-19,3104-3104[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GACUAAAAAGAUUAUGGAGUG&UUAUCCAUGAUUUUUUUAUUC	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1515_c0_g1_3113_TPlot.pdf
TRINITY_DN1515_c0_g1:3114	si_a319	TRINITY_DN1515_c0_g1	3103	3124	3114	-22.40	-15.70	0.700892857142857	7.5	1-4,3124-3121;5-19,3119-3105	x-x,3120-3120[BULt];20-21,3104-3103[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	ACUAAAAAGAUUAUGGAGUGGA&UUUA-UCCAUGAUUUUUUUAUU	3	0.999999976626698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1515_c0_g1_3114_TPlot.pdf
TRINITY_DN1515_c0_g1:3115	si_a318	TRINITY_DN1515_c0_g1	3104	3125	3115	-22.50	-15.70	0.697777777777778	7.5	2-5,3124-3121;6-20,3119-3105	1-1,3125-3125[UP5];x-x,3120-3120[BULt];21-21,3104-3104[UP3]	.(((((((((((((((.((((.&.))))-))))))))))))))).	CUAAAAAGAUUAUGGAGUGGAG&AUUUA-UCCAUGAUUUUUUUAU	3	0.99999988890655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1515_c0_g1_3115_TPlot.pdf
TRINITY_DN1515_c0_g1:391	si_a509	TRINITY_DN1515_c0_g1	378	400	391	-37.30	-25.10	0.672922252010724	8	1-14,400-387;15-16,384-383;18-21,381-378	x-x,386-385[BULt];17-17,382-382[SIL]	((((.((..((((((((((((((&))))))))))))))--)).))))	GCCUCACGGAUUCUGGGGGAGGC&GUCUUCCUUGGAAU--GUAAGGC	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN1515_c0_g1_391_TPlot.pdf
TRINITY_DN1515_c0_g1:483	si_a355	TRINITY_DN1515_c0_g1	472	492	483	-26.80	-18.10	0.675373134328358	12.5	6-20,487-473	1-5,492-488[UP5];21-21,472-472[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACUGGUCGAAAUGGAAGAAGA&AUUAAUUCUAUUUUGAUCGGA	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN1515_c0_g1_483_TPlot.pdf
TRINITY_DN1515_c0_g1:5127	si_a787	TRINITY_DN1515_c0_g1	5112	5136	5127	-26.30	-17.30	0.657794676806084	10	1-13,5136-5124;14-17,5122-5119;18-21,5115-5112	x-x,5123-5123[BULt];x-x,5118-5116[BULt]	((((...((((.(((((((((((((&)))))))))))))-))))---))))	UGGAGCAAGGUCAGGAGAGUAGGGG&CUUCUAUUUUUCU-AUUU---UCCA	2	0.999999999886692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1515_c0_g1_5127_TPlot.pdf
TRINITY_DN1515_c0_g1:5129	si_a785	TRINITY_DN1515_c0_g1	5117	5138	5129	-25.90	-17.90	0.691119691119691	8.5	1-15,5138-5124;16-20,5122-5118	x-x,5123-5123[BULt];21-21,5117-5117[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	CAAGGUCAGGAGAGUAGGGGGG&CUCUUCUAUUUUUCU-AUUUUC	4	0.999999999995883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1515_c0_g1_5129_TPlot.pdf
TRINITY_DN1515_c0_g1:5130	si_a784	TRINITY_DN1515_c0_g1	5118	5139	5130	-24.70	-17.90	0.724696356275304	8.5	2-16,5138-5124;17-21,5122-5118	1-1,5139-5139[UP5];x-x,5123-5123[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	AAGGUCAGGAGAGUAGGGGGGA&ACUCUUCUAUUUUUCU-AUUUU	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1515_c0_g1_5130_TPlot.pdf
TRINITY_DN1515_c0_g1:5131	si_a783	TRINITY_DN1515_c0_g1	5120	5140	5131	-24.70	-17.20	0.696356275303644	12	3-17,5138-5124	1-2,5140-5139[UP5];18-21,5123-5120[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUCAGGAGAGUAGGGGGGAU&AACUCUUCUAUUUUUCUAUUU	2	0.99998838640176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1515_c0_g1_5131_TPlot.pdf
TRINITY_DN1515_c0_g1:5132	si_a782	TRINITY_DN1515_c0_g1	5121	5141	5132	-26.40	-18.10	0.685606060606061	10	1-2,5141-5140;4-18,5138-5124	3-3,5139-5139[SIL];19-21,5123-5121[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	GUCAGGAGAGUAGGGGGGAUG&CAACUCUUCUAUUUUUCUAUU	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1515_c0_g1_5132_TPlot.pdf
TRINITY_DN1515_c0_g1:5133	si_a781	TRINITY_DN1515_c0_g1	5122	5142	5133	-27.40	-19.70	0.718978102189781	8.5	1-3,5142-5140;5-19,5138-5124	4-4,5139-5139[SIL];20-21,5123-5122[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	UCAGGAGAGUAGGGGGGAUGA&UCAACUCUUCUAUUUUUCUAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN1515_c0_g1_5133_TPlot.pdf
TRINITY_DN1515_c0_g1:5134	si_a780	TRINITY_DN1515_c0_g1	5123	5143	5134	-27.30	-20.40	0.747252747252747	7.5	1-4,5143-5140;6-20,5138-5124	5-5,5139-5139[SIL];21-21,5123-5123[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CAGGAGAGUAGGGGGGAUGAA&UUCAACUCUUCUAUUUUUCUA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1515_c0_g1_5134_TPlot.pdf
TRINITY_DN1515_c0_g1:5718	si_a280	TRINITY_DN1515_c0_g1	5708	5727	5718	-32.10	-20.90	0.651090342679128	5.5	1-6,5727-5722;8-14,5720-5714;16-20,5713-5709	7-7,5721-5721[SIL];15-15,x-x[BULq];21-21,5708-5708[UP3]	.(((((-(((((((.((((((&)))))).))))))).))))).	CAAUCC-GGCGAUCAUUUUGU&ACGAAAAGAUCGCUUGGAUUU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN1515_c0_g1_5718_TPlot.pdf
TRINITY_DN1515_c0_g1:5783	si_a340	TRINITY_DN1515_c0_g1	5772	5792	5783	-30.20	-19.80	0.655629139072848	14	1-10,5792-5783	11-21,5782-5772[UP3]	...........((((((((((&))))))))))...........	UUGUGGUCGACCGGGACGAGG&CCUUGUCCCGAAAAUAUUAAU	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a340_TRINITY_DN1515_c0_g1_5783_TPlot.pdf
TRINITY_DN1515_c0_g1:625	si_a11	TRINITY_DN1515_c0_g1	614	634	625	-28.80	-19.50	0.677083333333333	11	4-17,631-618	1-3,634-632[UP5];18-21,617-614[UP3]	....((((((((((((((...&...))))))))))))))....	GGAGGAGUAGGCUUUUUCGUG&GAAGAGAAAGCCUAUUUAUUU	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a11_TRINITY_DN1515_c0_g1_625_TPlot.pdf
TRINITY_DN1515_c0_g1:629	si_a7	TRINITY_DN1515_c0_g1	618	638	629	-29.10	-19.10	0.656357388316151	15	8-21,631-618	1-7,638-632[UP5]	((((((((((((((.......&.......))))))))))))))	GAGUAGGCUUUUUCGUGCACA&AAUUGAAGAGAAAGCCUAUUU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN1515_c0_g1_629_TPlot.pdf
TRINITY_DN1515_c0_g1:6870	si_s66	TRINITY_DN1515_c0_g1	6857	6880	6870	-26.30	-18.10	0.688212927756654	6	1-9,6880-6872;10-18,6870-6862;19-20,6859-6858	x-x,6871-6871[BULt];x-x,6861-6860[BULt];21-21,6857-6857[UP3]	.((..(((((((((.(((((((((&)))))))))-)))))))))--)).	CGAUUAAAAAAAUAUGAGGUUGCU&AGCAACUUC-UAUUUUUUU--UCU	3	0.999972643704982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN1515_c0_g1_6870_TPlot.pdf
TRINITY_DN1515_c0_g1:6875	si_s62	TRINITY_DN1515_c0_g1	6863	6884	6875	-26.50	-18.30	0.690566037735849	8	4-13,6881-6872;14-21,6870-6863	1-3,6884-6882[UP5];x-x,6871-6871[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AAAAAAUAUGAGGUUGCUGCCG&AGUUAGCAACUUC-UAUUUUUU	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN1515_c0_g1_6875_TPlot.pdf
TRINITY_DN1515_c0_g1:81	si_s803	TRINITY_DN1515_c0_g1	64	90	81	-26.00	-18.90	0.726923076923077	11	2-13,89-78;14-21,71-64	1-1,90-90[UP5];x-x,77-72[BULt]	((((((((......((((((((((((.&.))))))))))))------))))))))	AAGGGGUGUAAGGGGCGAAGGUAAGAG&AUUUUAUCUUCGU------UACCUUUU	2	0.993767817732346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1515_c0_g1_81_TPlot.pdf
TRINITY_DN1515_c0_g1:931	si_s75	TRINITY_DN1515_c0_g1	920	940	931	-24.00	-15.70	0.654166666666667	8.5	3-15,938-926;17-21,924-920	1-2,940-939[UP5];16-16,925-925[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGGAACGAAAGAGGAGAGACC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1515_c0_g1_931_TPlot.pdf
TRINITY_DN1515_c0_g2:720	si_a790	TRINITY_DN1515_c0_g2	709	733	720	-25.80	-17.20	0.666666666666667	12.5	1-9,733-725;10-18,720-712;20-21,710-709	x-x,724-721[BULt];19-19,711-711[SIL]	((.(((((((((....(((((((((&)))))))))----))))))))).))	GAAUGGAGAGUACUUCGAAGGAUAG&CUAUUUUUC----UAUUUUCCAAUC	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN1515_c0_g2_720_TPlot.pdf
TRINITY_DN15160_c1_g1:406	si_s824	TRINITY_DN15160_c1_g1	395	414	406	-21.20	-14.20	0.669811320754717	6	1-7,414-408;9-17,407-399	8-8,x-x[BULq];18-21,398-395[UP3]	....(((((((((-(((((((&))))))).)))))))))....	UAGCUGUUUUUCA-UAUUAAG&CUUAAUAAUGAAAAACAAUUU	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s824_TRINITY_DN15160_c1_g1_406_TPlot.pdf
TRINITY_DN15166_c0_g2:1567	si_s425	TRINITY_DN15166_c0_g2	1556	1576	1567	-23.50	-16.00	0.680851063829787	6.5	1-10,1576-1567;13-20,1564-1557	11-12,1566-1565[SIL];21-21,1556-1556[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	GGUAGUUAUAUUUAUGUAGAA&UUCUAUAUAACAAUAAUUACA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s425_TRINITY_DN15166_c0_g2_1567_TPlot.pdf
TRINITY_DN1516_c0_g1:2390	si_a425	TRINITY_DN1516_c0_g1	2376	2399	2390	-30.80	-21.20	0.688311688311688	9	2-4,2398-2396;6-17,2394-2383;18-21,2379-2376	1-1,2399-2399[UP5];5-5,2395-2395[SIL];x-x,2382-2380[BULt]	((((...((((((((((((.(((.&.))).))))))))))))---))))	CCGAUAUCGGGUCCUGUGUAUAUC&AAUAAAUAUAGGAUCCG---UUGG	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN1516_c0_g1_2390_TPlot.pdf
TRINITY_DN1516_c0_g1:2392	si_a423	TRINITY_DN1516_c0_g1	2381	2401	2392	-27.10	-18.50	0.682656826568266	11.5	4-6,2398-2396;8-19,2394-2383	1-3,2401-2399[UP5];7-7,2395-2395[SIL];20-21,2382-2381[UP3]	..((((((((((((.(((...&...))).))))))))))))..	AUCGGGUCCUGUGUAUAUCGA&UAAAUAAAUAUAGGAUCCGUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a423_TRINITY_DN1516_c0_g1_2392_TPlot.pdf
TRINITY_DN1516_c0_g1:2739	si_s537	TRINITY_DN1516_c0_g1	2728	2748	2739	-26.40	-18.10	0.685606060606061	10.5	2-16,2747-2733	1-1,2748-2748[UP5];17-21,2732-2728[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUCCGUGGUUGGGUCAAGAGG&AUUUUUGAUCCGAUCAAAAUA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN1516_c0_g1_2739_TPlot.pdf
TRINITY_DN1516_c0_g1:2740	si_s536	TRINITY_DN1516_c0_g1	2729	2749	2740	-27.70	-18.10	0.653429602888087	11	3-17,2747-2733	1-2,2749-2748[UP5];18-21,2732-2729[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCCGUGGUUGGGUCAAGAGGA&CAUUUUUGAUCCGAUCAAAAU	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN1516_c0_g1_2740_TPlot.pdf
TRINITY_DN1516_c0_g1:2741	si_s535	TRINITY_DN1516_c0_g1	2730	2749	2741	-28.60	-18.80	0.657342657342657	9	1-2,2749-2748;4-18,2747-2733	3-3,x-x[BULq];19-21,2732-2730[UP3]	...(((((((((((((((-((&)).)))))))))))))))...	CCGUGGUUGGGUCAAGAG-GA&UCAUUUUUGAUCCGAUCAAAA	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN1516_c0_g1_2741_TPlot.pdf
TRINITY_DN1516_c0_g1:2742	si_s534	TRINITY_DN1516_c0_g1	2731	2750	2742	-28.80	-18.80	0.652777777777778	9	2-3,2749-2748;5-19,2747-2733	1-1,2750-2750[UP5];4-4,x-x[BULq];20-21,2732-2731[UP3]	..(((((((((((((((-((.&.)).)))))))))))))))..	CGUGGUUGGGUCAAGAG-GAC&AUCAUUUUUGAUCCGAUCAAA	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN1516_c0_g1_2742_TPlot.pdf
TRINITY_DN1516_c0_g1:2743	si_s533	TRINITY_DN1516_c0_g1	2732	2751	2743	-28.80	-18.80	0.652777777777778	9.5	3-4,2749-2748;6-20,2747-2733	1-2,2751-2750[UP5];5-5,x-x[BULq];21-21,2732-2732[UP3]	.(((((((((((((((-((..&..)).))))))))))))))).	GUGGUUGGGUCAAGAG-GACG&AAUCAUUUUUGAUCCGAUCAA	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN1516_c0_g1_2743_TPlot.pdf
TRINITY_DN1516_c0_g1:3035	si_a792	TRINITY_DN1516_c0_g1	3024	3044	3035	-27.60	-18.60	0.673913043478261	14	8-20,3037-3025	1-7,3044-3038[UP5];21-21,3024-3024[UP3]	.(((((((((((((.......&.......))))))))))))).	GGGAUUGGAAAAUAAAAUCAU&AUUUUUCUAUUUUCCAAUCCG	2	0.997697409833658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN1516_c0_g1_3035_TPlot.pdf
TRINITY_DN1516_c0_g1:4308	si_a143	TRINITY_DN1516_c0_g1	4297	4317	4308	-25.10	-16.80	0.669322709163347	12	6-18,4312-4300	1-5,4317-4313[UP5];19-21,4299-4297[UP3]	...(((((((((((((.....&.....)))))))))))))...	CGAAAAACAACAACGAAUCCU&AUUAAUCGUUGUUGUUUUAAG	4	0.999995070517503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN1516_c0_g1_4308_TPlot.pdf
TRINITY_DN15172_c0_g1:2626	si_s86	TRINITY_DN15172_c0_g1	2615	2635	2626	-32.90	-22.60	0.68693009118541	6.5	1-16,2635-2620	17-21,2619-2615[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUACCAGAAGAAGAGAGGAAG&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN15172_c0_g1_2626_TPlot.pdf
TRINITY_DN15172_c0_g1:2627	si_s85	TRINITY_DN15172_c0_g1	2616	2636	2627	-33.80	-22.80	0.674556213017752	7	2-17,2635-2620	1-1,2636-2636[UP5];18-21,2619-2616[UP3]	....((((((((((((((((.&.))))))))))))))))....	UACCAGAAGAAGAGAGGAAGU&CUUUCCUUUCUUCUUCUUCGC	3	0.999999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN15172_c0_g1_2627_TPlot.pdf
TRINITY_DN15172_c0_g1:2628	si_s84	TRINITY_DN15172_c0_g1	2617	2637	2628	-32.30	-22.80	0.705882352941177	8	3-18,2635-2620	1-2,2637-2636[UP5];19-21,2619-2617[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACCAGAAGAAGAGAGGAAGUU&UCUUUCCUUUCUUCUUCUUCG	2	0.99999888115076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN15172_c0_g1_2628_TPlot.pdf
TRINITY_DN15172_c0_g1:2629	si_s83	TRINITY_DN15172_c0_g1	2618	2641	2629	-30.90	-22.90	0.741100323624595	9.5	1-4,2641-2638;5-19,2634-2620	x-x,2637-2635[BULt];20-21,2619-2618[UP3]	..(((((((((((((((...((((&))))---)))))))))))))))..	CCAGAAGAAGAGAGGAAGUUAGAG&UUCU---UUCCUUUCUUCUUCUUC	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN15172_c0_g1_2629_TPlot.pdf
TRINITY_DN15172_c0_g1:2633	si_s79	TRINITY_DN15172_c0_g1	2622	2645	2633	-26.20	-18.60	0.709923664122137	14.5	5-8,2641-2638;9-21,2634-2622	1-4,2645-2642[UP5];x-x,2637-2635[BULt]	(((((((((((((...((((....&....))))---)))))))))))))	AAGAAGAGAGGAAGUUAGAGCUUC&UUUUUUCU---UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15172_c0_g1_2633_TPlot.pdf
TRINITY_DN15172_c0_g1:289	si_a411	TRINITY_DN15172_c0_g1	278	298	289	-17.90	-12.70	0.709497206703911	6	2-17,297-282	1-1,298-298[UP5];18-21,281-278[UP3]	....((((((((((((((((.&.))))))))))))))))....	AACGAUUUAAAUAUAAAUAAU&UUUGUUUAUAUUUAAAUAAAU	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN15172_c0_g1_289_TPlot.pdf
TRINITY_DN15172_c0_g1:290	si_a410	TRINITY_DN15172_c0_g1	279	299	290	-17.80	-12.70	0.713483146067416	7	3-18,297-282	1-2,299-298[UP5];19-21,281-279[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACGAUUUAAAUAUAAAUAAUG&UUUUGUUUAUAUUUAAAUAAA	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN15172_c0_g1_290_TPlot.pdf
TRINITY_DN15172_c0_g1:291	si_a409	TRINITY_DN15172_c0_g1	280	300	291	-19.50	-12.70	0.651282051282051	8	4-19,297-282	1-3,300-298[UP5];20-21,281-280[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGAUUUAAAUAUAAAUAAUGU&GUUUUGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN15172_c0_g1_291_TPlot.pdf
TRINITY_DN15172_c0_g1:3263	si_s830	TRINITY_DN15172_c0_g1	3252	3272	3263	-23.90	-17.20	0.719665271966527	8.5	4-7,3269-3266;9-20,3264-3253	1-3,3272-3270[UP5];8-8,3265-3265[SIL];21-21,3252-3252[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	GCUUUCAAGUUGUAUUUCUUU&AAUGAAAAACAAUUUGAAAGA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN15172_c0_g1_3263_TPlot.pdf
TRINITY_DN15172_c0_g1:452	si_a407	TRINITY_DN15172_c0_g1	438	461	452	-19.80	-13.02	0.657575757575757	10.5	1-11,461-451;14-21,445-438	12-13,450-446[AILt]	((((((((.....(((((((((((&)))))))))))---..))))))))	AUUUAGAUUCCGAAAACAGAACAA&UUGUUUUGUUU---AUAUUUAAAU	2	0.999999999999955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN15172_c0_g1_452_TPlot.pdf
TRINITY_DN15172_c0_g1:634	si_a21	TRINITY_DN15172_c0_g1	623	643	634	-24.30	-16.60	0.683127572016461	9.5	2-18,642-626	1-1,643-643[UP5];19-21,625-623[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GGUGAAUUAGAAGUGAGUGGC&CCUAUUUAUUUUUAGUUCUAA	2	0.997046598298336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN15172_c0_g1_634_TPlot.pdf
TRINITY_DN15172_c0_g1:635	si_a20	TRINITY_DN15172_c0_g1	624	643	635	-26.70	-19.20	0.719101123595506	8	1-3,643-641;5-19,640-626	4-4,x-x[BULq];20-21,625-624[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	GUGAAUUAGAAGUGAGU-GGC&GCCUAUUUAUUUUUAGUUCUA	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN15172_c0_g1_635_TPlot.pdf
TRINITY_DN15172_c0_g1:636	si_a19	TRINITY_DN15172_c0_g1	625	644	636	-27.00	-19.30	0.714814814814815	8	2-4,643-641;6-20,640-626	1-1,644-644[UP5];5-5,x-x[BULq];21-21,625-625[UP3]	.(((((((((((((((-(((.&.))).))))))))))))))).	UGAAUUAGAAGUGAGU-GGCA&AGCCUAUUUAUUUUUAGUUCU	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN15172_c0_g1_636_TPlot.pdf
TRINITY_DN15172_c0_g1:637	si_a18	TRINITY_DN15172_c0_g1	626	645	637	-26.30	-18.90	0.718631178707224	9	3-5,643-641;7-21,640-626	1-2,645-644[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GAAUUAGAAGUGAGU-GGCAC&AAGCCUAUUUAUUUUUAGUUC	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN15172_c0_g1_637_TPlot.pdf
TRINITY_DN15176_c0_g2:496	si_s485	TRINITY_DN15176_c0_g2	485	510	496	-18.10	-12.00	0.662983425414365	14	1-7,510-504;8-19,498-487	x-x,503-499[BULt];20-21,486-485[UP3]	..((((((((((((.....(((((((&)))))))-----))))))))))))..	UAUAUAUUUAGAUAGAGAUAAUAUGG&CUAUAUU-----UAUUUAAAUAUAAA	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN15176_c0_g2_496_TPlot.pdf
TRINITY_DN1517_c0_g1:130	si_a488	TRINITY_DN1517_c0_g1	118	139	130	-26.40	-18.10	0.685606060606061	7.5	1-14,139-126;16-16,124-124;17-21,122-118	15-15,125-125[SIL];x-x,123-123[BULt]	(((((.(.((((((((((((((&)))))))))))))).)-)))))	GAGAAUAGGACGUGUUUUGUGU&AUAUAGAAUAUGUCGU-UUUUC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN1517_c0_g1_130_TPlot.pdf
TRINITY_DN1517_c0_g1:132	si_a486	TRINITY_DN1517_c0_g1	121	141	132	-24.90	-16.50	0.662650602409639	11	1-16,141-126	17-21,125-121[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAUAGGACGUGUUUUGUGUGG&UUAUAUAGAAUAUGUCGUUUU	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN1517_c0_g1_132_TPlot.pdf
TRINITY_DN1517_c0_g1:1614	si_a463	TRINITY_DN1517_c0_g1	1603	1627	1614	-19.70	-13.10	0.66497461928934	10.5	1-7,1627-1621;8-21,1616-1603	x-x,1620-1617[BULt]	((((((((((((((....(((((((&)))))))----))))))))))))))	AUAAUUAUAUGUUGACCUUAUAUAA&UUAUAUA----UAAUAUGUAAUUAU	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1517_c0_g1_1614_TPlot.pdf
TRINITY_DN1517_c0_g1:1647	si_s437	TRINITY_DN1517_c0_g1	1636	1656	1647	-19.70	-13.00	0.65989847715736	15	8-20,1649-1637	1-7,1656-1650[UP5];21-21,1636-1636[UP3]	.(((((((((((((.......&.......))))))))))))).	CUAUAUAUAGUAUGGAAGAAA&AUAAUUACAUAUUAUAUAUAA	3	0.999995920298892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN1517_c0_g1_1647_TPlot.pdf
TRINITY_DN1517_c0_g1:209	si_s297	TRINITY_DN1517_c0_g1	198	218	209	-29.80	-19.60	0.657718120805369	10	1-2,218-217;4-14,215-205	3-3,216-216[SIL];15-21,204-198[UP3]	.......(((((((((((.((&)).))))))))))).......	AACACAAGCAGUUCCAAUGGA&UCGAUUGGAAUUGCGAAAAUU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN1517_c0_g1_209_TPlot.pdf
TRINITY_DN1517_c0_g1:2805	si_s522	TRINITY_DN1517_c0_g1	2794	2814	2805	-23.80	-17.50	0.735294117647059	6.5	1-13,2814-2802;15-19,2800-2796	14-14,2801-2801[SIL];20-21,2795-2794[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	ACGAAUGUUUUUGAGUUGAGA&UCUUAAUUCGAAAUCAUUUUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN1517_c0_g1_2805_TPlot.pdf
TRINITY_DN1517_c0_g1:2884	si_a308	TRINITY_DN1517_c0_g1	2870	2893	2884	-32.70	-22.10	0.675840978593272	8.5	1-10,2893-2884;11-14,2882-2879;15-20,2876-2871	x-x,2883-2883[BULt];x-x,2878-2877[BULt];21-21,2870-2870[UP3]	.((((((..((((.((((((((((&))))))))))-))))--)))))).	GGUGGAUCUGGAUACCAAGCGGGU&AUUCGCUUGG-AUUU--AUCCAUG	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN1517_c0_g1_2884_TPlot.pdf
TRINITY_DN1517_c0_g1:2885	si_a307	TRINITY_DN1517_c0_g1	2871	2894	2885	-33.00	-22.40	0.678787878787879	8.5	2-11,2893-2884;12-15,2882-2879;16-21,2876-2871	1-1,2894-2894[UP5];x-x,2883-2883[BULt];x-x,2878-2877[BULt]	((((((..((((.((((((((((.&.))))))))))-))))--))))))	GUGGAUCUGGAUACCAAGCGGGUG&GAUUCGCUUGG-AUUU--AUCCAU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN1517_c0_g1_2885_TPlot.pdf
TRINITY_DN1517_c0_g1:353	si_a227	TRINITY_DN1517_c0_g1	341	362	353	-26.80	-19.40	0.723880597014925	6.5	1-12,362-351;13-15,349-347;17-21,345-341	x-x,350-350[BULt];16-16,346-346[SIL]	(((((.(((.((((((((((((&))))))))))))-))).)))))	AAUUGUUUGUUGGAGGCAUGAG&CUCAUGUUUCUA-UAAUCAAUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN1517_c0_g1_353_TPlot.pdf
TRINITY_DN1517_c0_g1:356	si_a224	TRINITY_DN1517_c0_g1	344	365	356	-27.40	-19.50	0.711678832116788	6	2-15,364-351;16-18,349-347;20-21,345-344	1-1,365-365[UP5];x-x,350-350[BULt];19-19,346-346[SIL]	((.(((.((((((((((((((.&.))))))))))))))-))).))	UGUUUGUUGGAGGCAUGAGUUG&AAACUCAUGUUUCUA-UAAUCA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN1517_c0_g1_356_TPlot.pdf
TRINITY_DN1517_c0_g1:357	si_a223	TRINITY_DN1517_c0_g1	346	366	357	-27.10	-18.80	0.693726937269373	10.5	3-16,364-351	1-2,366-365[UP5];17-21,350-346[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUGUUGGAGGCAUGAGUUGG&UAAACUCAUGUUUCUAUAAUC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN1517_c0_g1_357_TPlot.pdf
TRINITY_DN1517_c0_g1:358	si_a222	TRINITY_DN1517_c0_g1	347	367	358	-25.20	-18.80	0.746031746031746	11	4-17,364-351	1-3,367-365[UP5];18-21,350-347[UP3]	....((((((((((((((...&...))))))))))))))....	UUGUUGGAGGCAUGAGUUGGG&UUAAACUCAUGUUUCUAUAAU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN1517_c0_g1_358_TPlot.pdf
TRINITY_DN1517_c0_g1:359	si_a221	TRINITY_DN1517_c0_g1	348	368	359	-25.20	-18.80	0.746031746031746	11.5	5-18,364-351	1-4,368-365[UP5];19-21,350-348[UP3]	...((((((((((((((....&....))))))))))))))...	UGUUGGAGGCAUGAGUUGGGA&AUUAAACUCAUGUUUCUAUAA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN1517_c0_g1_359_TPlot.pdf
TRINITY_DN1517_c0_g1:360	si_a220	TRINITY_DN1517_c0_g1	349	369	360	-25.10	-18.80	0.749003984063745	12.5	6-19,364-351	1-5,369-365[UP5];20-21,350-349[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUGGAGGCAUGAGUUGGGAA&AAUUAAACUCAUGUUUCUAUA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN1517_c0_g1_360_TPlot.pdf
TRINITY_DN1517_c0_g1:361	si_a219	TRINITY_DN1517_c0_g1	350	370	361	-25.10	-18.80	0.749003984063745	13.5	7-20,364-351	1-6,370-365[UP5];21-21,350-350[UP3]	.((((((((((((((......&......)))))))))))))).	UUGGAGGCAUGAGUUGGGAAA&UAAUUAAACUCAUGUUUCUAU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN1517_c0_g1_361_TPlot.pdf
TRINITY_DN1517_c0_g1:362	si_a218	TRINITY_DN1517_c0_g1	351	371	362	-26.60	-18.70	0.703007518796992	14.5	8-21,364-351	1-7,371-365[UP5]	((((((((((((((.......&.......))))))))))))))	UGGAGGCAUGAGUUGGGAAAC&CUAAUUAAACUCAUGUUUCUA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN1517_c0_g1_362_TPlot.pdf
TRINITY_DN1517_c1_g1:10420	si_s549	TRINITY_DN1517_c1_g1	10409	10430	10420	-20.50	-13.60	0.663414634146341	5.5	1-3,10430-10428;4-15,10426-10415;17-21,10413-10409	x-x,10427-10427[BULt];16-16,10414-10414[SIL]	(((((.((((((((((((.(((&)))-)))))))))))).)))))	GGGUACUAAUUCUGUUUUAGAU&AUC-AAAAUAGAAUUAAUAUUU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN1517_c1_g1_10420_TPlot.pdf
TRINITY_DN1517_c1_g1:1671	si_s618	TRINITY_DN1517_c1_g1	1656	1680	1671	-30.30	-20.80	0.686468646864686	17.5	6-12,1675-1669;13-21,1664-1656	1-5,1680-1676[UP5];x-x,1668-1665[BULt]	(((((((((....(((((((.....&.....)))))))----)))))))))	GAGAAGAUCUCGGGCUUGGAGGCUA&UUAAAUCCAAGC----GAUCUUUUC	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN1517_c1_g1_1671_TPlot.pdf
TRINITY_DN1517_c1_g4:1639	si_s88	TRINITY_DN1517_c1_g4	1629	1649	1639	-34.80	-23.30	0.669540229885058	5	1-9,1649-1641;10-16,1639-1633;18-20,1632-1630	x-x,1640-1640[BULt];17-17,x-x[BULq];21-21,1629-1629[UP3]	.(((-(((((((.(((((((((&)))))))))-))))))).))).	CAAG-GAAGAAGAAAGAGAGGA&UCCUUUCUU-CUUCUUCGCUUC	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1517_c1_g4_1639_TPlot.pdf
TRINITY_DN1517_c1_g4:1640	si_s72	TRINITY_DN1517_c1_g4	1630	1649	1640	-24.10	-16.10	0.66804979253112	6	1-4,1649-1646;6-16,1644-1634;18-21,1633-1630	5-5,1645-1645[SIL];17-17,x-x[BULq]	((((-(((((((((((.((((&)))).))))))))))).))))	AAGG-AAGAAGAAAGAGAGGA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1517_c1_g4_1640_TPlot.pdf
TRINITY_DN1517_c1_g4:1641	si_s87	TRINITY_DN1517_c1_g4	1630	1650	1641	-32.90	-24.20	0.735562310030395	4	1-10,1650-1641;11-17,1639-1633;19-21,1632-1630	x-x,1640-1640[BULt];18-18,x-x[BULq]	(((-(((((((.((((((((((&))))))))))-))))))).)))	AAG-GAAGAAGAAAGAGAGGAA&UUCCUUUCUU-CUUCUUCGCUU	2	0.998779475043878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1517_c1_g4_1641_TPlot.pdf
TRINITY_DN1517_c1_g4:1642	si_s82	TRINITY_DN1517_c1_g4	1631	1651	1642	-28.90	-22.50	0.778546712802768	5.5	2-7,1650-1645;9-21,1643-1631	1-1,1651-1651[UP5];8-8,1644-1644[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	AGGAAGAAGAAAGAGAGGAAG&UUUCUUUCCUUUCUUCUUCUU	2	0.998547150004088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1517_c1_g4_1642_TPlot.pdf
TRINITY_DN15183_c0_g1:295	si_a298	TRINITY_DN15183_c0_g1	285	304	295	-28.10	-19.00	0.676156583629893	3.5	1-4,304-301;6-14,299-291;16-21,290-285	5-5,300-300[SIL];15-15,x-x[BULq]	((((((-(((((((((.((((&)))).))))))))).))))))	UCCAAG-GAAUCUUUUAUAAG&UUUAAAAAAGAUUCGCUUGGA	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN15183_c0_g1_295_TPlot.pdf
TRINITY_DN15185_c0_g1:1555	si_s79	TRINITY_DN15185_c0_g1	1541	1564	1555	-26.20	-21.00	0.801526717557252	11	1-10,1564-1555;11-21,1551-1541	x-x,1554-1552[BULt]	(((((((((((...((((((((((&))))))))))---)))))))))))	AGGAAGAGAGGCUCGAGGAAAGGA&UUUUUUCUUU---CCUUUCUUCUU	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15185_c0_g1_1555_TPlot.pdf
TRINITY_DN15185_c0_g1:1557	si_s81	TRINITY_DN15185_c0_g1	1542	1566	1557	-28.90	-20.10	0.695501730103806	11	1-12,1566-1555;13-15,1551-1549;16-21,1547-1542	x-x,1554-1552[BULt];x-x,1548-1548[BULt]	((((((.(((...((((((((((((&))))))))))))---)))-))))))	GGAAGAGAGGCUCGAGGAAAGGAGA&UUUUCUUUCCUU---UCU-UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN15185_c0_g1_1557_TPlot.pdf
TRINITY_DN15185_c0_g1:1566	si_a785	TRINITY_DN15185_c0_g1	1555	1575	1566	-25.90	-17.30	0.667953667953668	9.5	1-7,1575-1569;10-15,1566-1561;17-21,1559-1555	8-9,1568-1567[SIL];16-16,1560-1560[SIL]	(((((.((((((..(((((((&)))))))..)))))).)))))	GAGGAAAGGAGACAGGAGGAG&CUCUUCUAUUUUUCUAUUUUC	2	0.999999999822642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN15185_c0_g1_1566_TPlot.pdf
TRINITY_DN15185_c0_g1:1568	si_s78	TRINITY_DN15185_c0_g1	1554	1577	1568	-26.20	-20.80	0.793893129770992	11.5	1-10,1577-1568;11-20,1564-1555	x-x,1567-1565[BULt];21-21,1554-1554[UP3]	.((((((((((...((((((((((&))))))))))---)))))))))).	CGAGGAAAGGAGACAGGAGGAGAA&UUUUUUUCUU---UCCUUUCUUCU	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15185_c0_g1_1568_TPlot.pdf
TRINITY_DN15185_c0_g1:1570	si_s76	TRINITY_DN15185_c0_g1	1556	1579	1570	-23.60	-18.10	0.766949152542373	11.5	2-12,1578-1568;13-21,1564-1556	1-1,1579-1579[UP5];x-x,1567-1565[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	AGGAAAGGAGACAGGAGGAGAAAA&AUUUUUUUUCUU---UCCUUUCUU	4	0.999999999999701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN15185_c0_g1_1570_TPlot.pdf
TRINITY_DN15185_c0_g1:1571	si_s74	TRINITY_DN15185_c0_g1	1558	1580	1571	-25.00	-17.10	0.684	8.5	1-2,1580-1579;4-13,1577-1568;14-21,1565-1558	3-3,1578-1578[SIL];x-x,1567-1566[BULt]	((((((((..((((((((((.((&)).))))))))))--))))))))	GAAAGGAGACAGGAGGAGAAAAG&CUAUUUUUUUUCU--UUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN15185_c0_g1_1571_TPlot.pdf
TRINITY_DN15185_c0_g1:3907	si_a775	TRINITY_DN15185_c0_g1	3896	3919	3907	-27.20	-19.20	0.705882352941177	11	2-9,3918-3911;10-18,3907-3899	1-1,3919-3919[UP5];x-x,3910-3908[BULt];19-21,3898-3896[UP3]	...(((((((((...((((((((.&.))))))))---)))))))))...	CUCUAGAAGAGUUAAUGAAUCGAC&AUUGAUUCA---ACUCUUCUAUUU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN15185_c0_g1_3907_TPlot.pdf
TRINITY_DN15185_c0_g1:853	si_s76	TRINITY_DN15185_c0_g1	841	862	853	-23.60	-15.60	0.661016949152542	16	7-10,856-853;11-21,851-841	1-6,862-857[UP5];x-x,852-852[BULt]	(((((((((((.((((......&......))))-)))))))))))	GAGGAAGGAGAUGAGAUUGUUC&AUUUUUUUUC-UUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN15185_c0_g1_853_TPlot.pdf
TRINITY_DN15188_c0_g1:867	si_s426	TRINITY_DN15188_c0_g1	856	876	867	-23.60	-15.98	0.677118644067797	7	1-6,876-871;10-20,867-857	7-9,870-868[SIL];21-21,856-856[UP3]	.(((((((((((...((((((&))))))...))))))))))).	UUGUAAUUAUUGAUUUAUAGA&UCUAUAUAACAAUAAUUACAU	0	0.0411541435524481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN15188_c0_g1_867_TPlot.pdf
TRINITY_DN1518_c0_g1:1134	si_a331	TRINITY_DN1518_c0_g1	1123	1143	1134	-30.60	-20.30	0.663398692810457	10.5	1-8,1143-1136;11-19,1133-1125	9-10,1135-1134[SIL];20-21,1124-1123[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	AGCGGGACAAGCUGUGGAAGG&UUUUUUAUUCCUUGUCCCGAA	4	0.999997655413421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN1518_c0_g1_1134_TPlot.pdf
TRINITY_DN1518_c0_g1:1136	si_a329	TRINITY_DN1518_c0_g1	1125	1145	1136	-29.60	-20.50	0.692567567567568	12	3-10,1143-1136;13-21,1133-1125	1-2,1145-1144[UP5];11-12,1135-1134[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	CGGGACAAGCUGUGGAAGGGA&AUUUUUUUAUUCCUUGUCCCG	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1518_c0_g1_1136_TPlot.pdf
TRINITY_DN1518_c0_g1:1846	si_s523	TRINITY_DN1518_c0_g1	1835	1863	1846	-24.50	-17.50	0.714285714285714	20	1-8,1863-1856;9-21,1847-1835	x-x,1855-1848[BULt]	(((((((((((((........((((((((&))))))))--------)))))))))))))	CAGAAAUGGUUUCAAAACGAAGAGUUGGG&CUUAAUUC--------GAAAUCAUUUUUG	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN1518_c0_g1_1846_TPlot.pdf
TRINITY_DN1518_c0_g1:1856	si_s521	TRINITY_DN1518_c0_g1	1837	1865	1856	-23.90	-15.70	0.656903765690377	21	2-10,1864-1856;11-21,1847-1837	1-1,1865-1865[UP5];x-x,1855-1848[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	GAAAUGGUUUCAAAACGAAGAGUUGGGAU&UUCUUAAUUC--------GAAAUCAUUUU	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN1518_c0_g1_1856_TPlot.pdf
TRINITY_DN1518_c0_g1:263	si_a317	TRINITY_DN1518_c0_g1	251	271	263	-24.30	-16.60	0.683127572016461	7.5	1-5,271-267;7-12,266-261;13-21,259-251	6-6,x-x[BULq];x-x,260-260[BULt]	(((((((((.((((((-(((((&))))).))))))-)))))))))	UAGGAGAAUCCAUGGA-AGGUC&GAUUUAUCCAUG-AUUUUUUUA	4	0.99999927711518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1518_c0_g1_263_TPlot.pdf
TRINITY_DN15191_c0_g1:727	si_s827	TRINITY_DN15191_c0_g1	716	736	727	-21.90	-14.30	0.65296803652968	5	1-15,736-722;18-19,719-718	16-17,721-720[SIL];20-21,717-716[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	AACACUUUGUUUUUUAUUAUU&AAUAAUGAAAAACAAUUUGAA	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN15191_c0_g1_727_TPlot.pdf
TRINITY_DN1519_c0_g1:1545	si_a74	TRINITY_DN1519_c0_g1	1534	1554	1545	-22.20	-14.70	0.662162162162162	8.5	1-2,1554-1553;5-7,1550-1548;9-20,1546-1535	3-4,1552-1551[SIL];8-8,1547-1547[SIL];21-21,1534-1534[UP3]	.((((((((((((.(((..((&))..))).)))))))))))).	CGAUAAUGAAGAAGAAUCGGA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999999525165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1519_c0_g1_1545_TPlot.pdf
TRINITY_DN1519_c0_g1:1546	si_a73	TRINITY_DN1519_c0_g1	1535	1555	1546	-21.90	-14.70	0.671232876712329	8.5	2-3,1554-1553;6-8,1550-1548;10-21,1546-1535	1-1,1555-1555[UP5];4-5,1552-1551[SIL];9-9,1547-1547[SIL]	((((((((((((.(((..((.&.))..))).))))))))))))	GAUAAUGAAGAAGAAUCGGAU&UUCAAAUUGUUUUUCAUUAUU	2	0.999999391987963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1519_c0_g1_1546_TPlot.pdf
TRINITY_DN1519_c0_g1:1627	si_s82	TRINITY_DN1519_c0_g1	1616	1636	1627	-28.90	-18.98	0.656747404844291	8	1-8,1636-1629;12-21,1625-1616	9-11,1628-1626[SIL]	((((((((((...((((((((&))))))))...))))))))))	GAGAAGAAGGCUAGAAAGAAG&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1519_c0_g1_1627_TPlot.pdf
TRINITY_DN1519_c0_g1:1629	si_s80	TRINITY_DN1519_c0_g1	1615	1638	1629	-28.20	-18.50	0.656028368794326	11.5	2-10,1637-1629;11-20,1625-1616	1-1,1638-1638[UP5];x-x,1628-1626[BULt];21-21,1615-1615[UP3]	.((((((((((...(((((((((.&.)))))))))---)))))))))).	CGAGAAGAAGGCUAGAAAGAAGGC&UUUUUCUUUC---CUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1519_c0_g1_1629_TPlot.pdf
TRINITY_DN1519_c0_g1:1630	si_s79	TRINITY_DN1519_c0_g1	1616	1639	1630	-26.20	-18.50	0.706106870229008	12	3-11,1637-1629;12-21,1625-1616	1-2,1639-1638[UP5];x-x,1628-1626[BULt]	((((((((((...(((((((((..&..)))))))))---))))))))))	GAGAAGAAGGCUAGAAAGAAGGCU&UUUUUUCUUUC---CUUUCUUCUU	2	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1519_c0_g1_1630_TPlot.pdf
TRINITY_DN1519_c0_g1:1631	si_s78	TRINITY_DN1519_c0_g1	1617	1640	1631	-26.20	-17.30	0.66030534351145	13.5	4-12,1637-1629;13-21,1625-1617	1-3,1640-1638[UP5];x-x,1628-1626[BULt]	(((((((((...(((((((((...&...)))))))))---)))))))))	AGAAGAAGGCUAGAAAGAAGGCUG&UUUUUUUCUUUC---CUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1519_c0_g1_1631_TPlot.pdf
TRINITY_DN1519_c0_g1:190	si_a487	TRINITY_DN1519_c0_g1	179	199	190	-24.80	-16.40	0.661290322580645	9.5	3-11,197-189;13-21,187-179	1-2,199-198[UP5];12-12,188-188[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GAGGACGACUUAUUUUGUGAU&UAUAUAGAAUAUGUCGUUUUU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN1519_c0_g1_190_TPlot.pdf
TRINITY_DN1519_c0_g1:294	si_a142	TRINITY_DN1519_c0_g1	283	303	294	-23.50	-16.50	0.702127659574468	9	4-17,300-287;19-21,285-283	1-3,303-301[UP5];18-18,286-286[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UUAUGACGACGAUGAUUAUGA&AAUUAAUCGUUGUUGUUUUAA	4	0.999999129531883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1519_c0_g1_294_TPlot.pdf
TRINITY_DN1519_c0_g1:295	si_a141	TRINITY_DN1519_c0_g1	284	304	295	-23.80	-15.80	0.663865546218487	13	5-18,300-287	1-4,304-301[UP5];19-21,286-284[UP3]	...((((((((((((((....&....))))))))))))))...	UAUGACGACGAUGAUUAUGAA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999940690776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1519_c0_g1_295_TPlot.pdf
TRINITY_DN15201_c0_g1:53	si_s674	TRINITY_DN15201_c0_g1	43	62	53	-27.60	-18.20	0.659420289855072	6.5	1-15,62-48;17-20,47-44	16-16,x-x[BULq];21-21,43-43[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	CUUCA-GUUUCUGUGAUUAGU&AUUGAUUAUAGAAACAUGAGU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s674_TRINITY_DN15201_c0_g1_53_TPlot.pdf
TRINITY_DN15201_c0_g1:55	si_s672	TRINITY_DN15201_c0_g1	45	64	55	-27.10	-22.20	0.819188191881919	5	1-17,64-48;19-21,47-45	18-18,x-x[BULq]	(((-(((((((((((((((((&))))))))))))))))).)))	UCA-GUUUCUGUGAUUAGUUC&GAAUUGAUUAUAGAAACAUGA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s672_TRINITY_DN15201_c0_g1_55_TPlot.pdf
TRINITY_DN15205_c3_g1:29	si_s80	TRINITY_DN15205_c3_g1	17	38	29	-28.20	-19.60	0.695035460992908	8	1-10,38-29;11-17,27-21;20-21,18-17	x-x,28-28[BULt];18-19,20-19[SIL]	((..(((((((.((((((((((&))))))))))-)))))))..))	GAUAGAGAGAGAGAGAGAGAGA&UUUUUCUUUC-CUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN15205_c3_g1_29_TPlot.pdf
TRINITY_DN15205_c3_g1:30	si_s79	TRINITY_DN15205_c3_g1	18	39	30	-26.20	-19.20	0.732824427480916	9	1-11,39-29;12-18,27-21	x-x,28-28[BULt];19-21,20-18[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	AUAGAGAGAGAGAGAGAGAGAA&UUUUUUCUUUC-CUUUCUUCUU	2	0.999999999449532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15205_c3_g1_30_TPlot.pdf
TRINITY_DN15205_c3_g1:31	si_s78	TRINITY_DN15205_c3_g1	19	40	31	-26.20	-20.10	0.767175572519084	8	1-12,40-29;13-19,27-21	x-x,28-28[BULt];20-21,20-19[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	UAGAGAGAGAGAGAGAGAGAAA&UUUUUUUCUUUC-CUUUCUUCU	4	0.999999998256872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15205_c3_g1_31_TPlot.pdf
TRINITY_DN15205_c3_g1:32	si_s75	TRINITY_DN15205_c3_g1	20	41	32	-24.00	-19.60	0.816666666666667	8	3-15,39-27;16-21,25-20	1-2,41-40[UP5];x-x,26-26[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAGAGAGAGAGAGAGAGAAAG&UAUUUUUUUUCUUUC-CUUUCU	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN15205_c3_g1_32_TPlot.pdf
TRINITY_DN15205_c3_g1:33	si_s76	TRINITY_DN15205_c3_g1	21	42	33	-23.60	-20.30	0.860169491525424	7	2-14,41-29;15-21,27-21	1-1,42-42[UP5];x-x,28-28[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	GAGAGAGAGAGAGAGAGAAAGC&AUUUUUUUUCUUUC-CUUUCUU	0	0.109586138408165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN15205_c3_g1_33_TPlot.pdf
TRINITY_DN15205_c3_g1:34	si_s69	TRINITY_DN15205_c3_g1	23	42	34	-23.40	-15.40	0.658119658119658	10.5	4-7,39-36;9-21,35-23	1-3,42-40[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	GAGAGAGAGAGAG-AGAAAGC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN15205_c3_g1_34_TPlot.pdf
TRINITY_DN1520_c0_g1:2066	si_a784	TRINITY_DN1520_c0_g1	2054	2075	2066	-24.70	-16.20	0.65587044534413	8	3-14,2073-2062;15-20,2060-2055	1-2,2075-2074[UP5];x-x,2061-2061[BULt];21-21,2054-2054[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	CAAGUAGCGAAAAUGGAGGAAG&ACUCUUCUAUUUUU-CUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1520_c0_g1_2066_TPlot.pdf
TRINITY_DN1521_c0_g1:312	si_a627	TRINITY_DN1521_c0_g1	301	320	312	-29.50	-20.30	0.688135593220339	12.5	1-5,320-316;11-20,311-302	6-10,315-312[AILq];21-21,301-301[UP3]	.((((((((((....-(((((&))))).....)))))))))).	UGGAGAUCGACUUUG-ACGCC&GGCGUAUUAUGUCGAUUUUUU	2	0.974564613511492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN1521_c0_g1_312_TPlot.pdf
TRINITY_DN1521_c0_g1:313	si_a626	TRINITY_DN1521_c0_g1	302	321	313	-30.20	-21.70	0.718543046357616	11.5	1-6,321-316;12-21,311-302	7-11,315-312[AILq]	((((((((((....-((((((&)))))).....))))))))))	GGAGAUCGACUUUG-ACGCCU&AGGCGUAUUAUGUCGAUUUUU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN1521_c0_g1_313_TPlot.pdf
TRINITY_DN1521_c0_g1:314	si_a625	TRINITY_DN1521_c0_g1	303	322	314	-30.60	-22.20	0.725490196078431	11.5	1-7,322-316;13-21,311-303	8-12,315-312[AILq]	(((((((((....-(((((((&))))))).....)))))))))	GAGAUCGACUUUG-ACGCCUG&UAGGCGUAUUAUGUCGAUUUU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN1521_c0_g1_314_TPlot.pdf
TRINITY_DN1521_c0_g1:835	si_a761	TRINITY_DN1521_c0_g1	824	844	835	-30.10	-20.00	0.664451827242525	9.5	2-11,843-834;13-13,832-832;15-20,830-825	1-1,844-844[UP5];12-12,833-833[SIL];14-14,831-831[SIL];21-21,824-824[UP3]	.((((((.(.((((((((((.&.)))))))))).).)))))).	UGUCAAUGACGAGCCCGAGGU&CCUUUGGGUUUUUGAUUGAUU	4	0.999999996828168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN1521_c0_g1_835_TPlot.pdf
TRINITY_DN1521_c0_g1:852	si_s90	TRINITY_DN1521_c0_g1	838	864	852	-35.30	-23.60	0.668555240793201	13	1-9,864-856;10-17,852-845;18-21,841-838	x-x,855-853[BULt];x-x,844-842[BULt]	((((...((((((((...(((((((((&)))))))))---))))))))---))))	CCGAGGUGGUGAAGGCAAAGAAGGAGG&CUUUCUUCU---UCUUCGCU---UCGG	4	0.999999999999925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1521_c0_g1_852_TPlot.pdf
TRINITY_DN1521_c0_g1:859	si_s86	TRINITY_DN1521_c0_g1	845	868	859	-32.90	-22.60	0.68693009118541	10.5	3-13,866-856;14-21,852-845	1-2,868-867[UP5];x-x,855-853[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	GGUGAAGGCAAAGAAGGAGGGGCG&UUUCCUUUCUUCU---UCUUCGCU	3	0.999999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1521_c0_g1_859_TPlot.pdf
TRINITY_DN1522_c0_g1:266	si_s552	TRINITY_DN1522_c0_g1	255	275	266	-21.10	-14.00	0.663507109004739	12	5-11,271-265;14-21,262-255	1-4,275-272[UP5];12-13,264-263[SIL]	((((((((..(((((((....&....)))))))..))))))))	CGGAAGUAGGGAUUCUAACAC&AAAAUAGAAUUAAUAUUUUCG	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN1522_c0_g1_266_TPlot.pdf
TRINITY_DN15234_c0_g2:304	si_a79	TRINITY_DN15234_c0_g2	293	313	304	-22.20	-15.40	0.693693693693694	11	1-17,313-297	18-21,296-293[UP3]	....(((((((((((((((((&)))))))))))))))))....	GGAAUUGGUGGUGGAGGACGA&UUGUUUUUCAUUAUUAAGAAA	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN15234_c0_g2_304_TPlot.pdf
TRINITY_DN1523_c0_g1:1154	si_a147	TRINITY_DN1523_c0_g1	1144	1163	1154	-30.40	-19.80	0.651315789473684	6	1-14,1163-1150;18-21,1147-1144	15-17,1149-1148[AILq]	((((..-((((((((((((((&))))))))))))))...))))	UGACAG-AAAAUAGCGACGAU&AUCGUUGUUGUUUUAAGGUCA	4	0.999999992905205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN1523_c0_g1_1154_TPlot.pdf
TRINITY_DN1523_c0_g1:1160	si_a141	TRINITY_DN1523_c0_g1	1149	1169	1160	-23.80	-16.10	0.676470588235294	14	7-20,1163-1150	1-6,1169-1164[UP5];21-21,1149-1149[UP3]	.((((((((((((((......&......)))))))))))))).	GAAAAUAGCGACGAUGAAGAA&UAAUUAAUCGUUGUUGUUUUA	4	0.99999999618061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1523_c0_g1_1160_TPlot.pdf
TRINITY_DN1523_c0_g1:1165	si_s87	TRINITY_DN1523_c0_g1	1154	1175	1165	-32.90	-21.50	0.653495440729483	7	1-7,1175-1169;8-11,1167-1164;13-14,1162-1161;16-20,1159-1155	x-x,1168-1168[BULt];12-12,1163-1163[SIL];15-15,1160-1160[SIL];21-21,1154-1154[UP3]	.(((((.((.((((.(((((((&)))))))-)))).)).))))).	UAGCGACGAUGAAGAAGAGGAA&UUCCUUU-CUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1523_c0_g1_1165_TPlot.pdf
TRINITY_DN1523_c0_g1:2985	si_a24	TRINITY_DN1523_c0_g1	2975	2994	2985	-24.20	-16.60	0.685950413223141	6	2-17,2993-2978;19-20,2977-2976	1-1,2994-2994[UP5];18-18,x-x[BULq];21-21,2975-2975[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	UUC-UGGGACUGAAAAUAGAA&AUUUAUUUUUAGUUCUAAGAC	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN1523_c0_g1_2985_TPlot.pdf
TRINITY_DN1523_c0_g1:2987	si_a22	TRINITY_DN1523_c0_g1	2976	2996	2987	-23.50	-16.20	0.68936170212766	10	4-19,2993-2978	1-3,2996-2994[UP5];20-21,2977-2976[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCUGGGACUGAAAAUAGAAUG&CUAUUUAUUUUUAGUUCUAAG	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN1523_c0_g1_2987_TPlot.pdf
TRINITY_DN1523_c0_g1:3039	si_s40	TRINITY_DN1523_c0_g1	3028	3048	3039	-24.30	-15.80	0.650205761316872	8	2-7,3047-3042;9-17,3040-3032	1-1,3048-3048[UP5];8-8,3041-3041[SIL];18-21,3031-3028[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	AAAUUCCAAUUAUCGAAGAUG&AAUCUUUAAUAAUUGGAUUUC	3	0.999945552445062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN1523_c0_g1_3039_TPlot.pdf
TRINITY_DN15246_c0_g1:132	si_s889	TRINITY_DN15246_c0_g1	121	141	132	-28.80	-20.00	0.694444444444444	11.5	4-7,138-135;10-21,132-121	1-3,141-139[UP5];8-9,134-133[SIL]	((((((((((((..((((...&...))))..))))))))))))	GAGGGGGAAGCCCUUUUGAGG&AAAUAAAUAGGCUUUCUCUUC	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN15246_c0_g1_132_TPlot.pdf
TRINITY_DN15246_c0_g1:216	si_a72	TRINITY_DN15246_c0_g1	205	225	216	-21.90	-14.50	0.662100456621005	10	1-7,225-219;10-18,216-208	8-9,218-217[SIL];19-21,207-205[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	ACUGUGGAGAACUUUUUGGAG&UUUCAAAUUGUUUUUCAUUAU	4	0.99999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN15246_c0_g1_216_TPlot.pdf
TRINITY_DN15248_c0_g1:3126	si_s8	TRINITY_DN15248_c0_g1	3115	3135	3126	-21.30	-15.20	0.713615023474178	7	1-10,3135-3126;12-18,3124-3118	11-11,3125-3125[SIL];19-21,3117-3115[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	CAAGUGGUAAAAAUAGGUAAU&AUUACUUAUUAUUACUAUAUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN15248_c0_g1_3126_TPlot.pdf
TRINITY_DN1524_c0_g2:1760	si_a633	TRINITY_DN1524_c0_g2	1744	1769	1760	-26.40	-17.20	0.651515151515151	14.5	1-11,1769-1759;12-16,1753-1749;18-20,1747-1745	x-x,1758-1754[BULt];17-17,1748-1748[SIL];21-21,1744-1744[UP3]	.(((.(((((.....(((((((((((&)))))))))))-----))))).))).	CACUGGAAAACAGGUAGUCGACAUGA&UUAUGUCGAUU-----UUUUUGAGUA	3	0.999999999997415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1524_c0_g2_1760_TPlot.pdf
TRINITY_DN1524_c0_g2:1796	si_a410	TRINITY_DN1524_c0_g2	1784	1805	1796	-17.80	-11.80	0.662921348314607	7.5	2-13,1804-1793;15-19,1790-1786	1-1,1805-1805[UP5];14-14,1792-1791[AILt];20-21,1785-1784[UP3]	..(((((..((((((((((((.&.))))))))))))-.)))))..	GCUGUUUUUAAUGUAGACAAAG&UUUUGUUUAUAUU-UAAAUAAA	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1524_c0_g2_1796_TPlot.pdf
TRINITY_DN1524_c0_g2:946	si_a70	TRINITY_DN1524_c0_g2	935	960	946	-23.90	-15.82	0.661924686192469	14.5	1-7,960-954;9-21,947-935	8-8,953-948[AILt]	(((((((((((((......(((((((&)))))))-----.)))))))))))))	AAUGGAAAACAAUAUAUCAUGGAGGA&UCUUUCA-----AAUUGUUUUUCAUU	3	0.999999999987715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1524_c0_g2_946_TPlot.pdf
TRINITY_DN15253_c0_g1:27	si_a866	TRINITY_DN15253_c0_g1	16	39	27	-23.30	-16.22	0.696137339055794	12.5	1-8,39-32;11-21,26-16	9-10,31-27[AILt]	(((((((((((.....((((((((&))))))))---..)))))))))))	UAGCUAGAUCUAUGGGAAUGAUUG&CAAUUAUU---AAAGAUUUAGUUG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN15253_c0_g1_27_TPlot.pdf
TRINITY_DN15257_c0_g1:82	si_s206	TRINITY_DN15257_c0_g1	69	91	82	-33.00	-22.20	0.672727272727273	10.5	2-11,90-81;12-18,78-72	1-1,91-91[UP5];x-x,80-79[BULt];19-21,71-69[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	GAGGAGCACGCCACUGGUAUAUG&AAUGUACCAGU--UGUGUUCGAA	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN15257_c0_g1_82_TPlot.pdf
TRINITY_DN15257_c0_g1:95	si_s627	TRINITY_DN15257_c0_g1	75	104	95	-36.10	-26.00	0.720221606648199	14.5	2-15,103-90;16-20,80-76	1-1,104-104[UP5];x-x,89-81[BULt];21-21,75-75[UP3]	.(((((.........((((((((((((((.&.))))))))))))))---------))))).	CACGCCACUGGUAUAUGCGGAGAGGUCGCC&AGCGAUCUUUUCGUA---------GGCGUU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN15257_c0_g1_95_TPlot.pdf
TRINITY_DN15258_c0_g1:378	si_s196	TRINITY_DN15258_c0_g1	366	387	378	-29.30	-20.50	0.699658703071672	11	5-12,383-376;13-21,374-366	1-4,387-384[UP5];x-x,375-375[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	GCUGGUAUAUUUCCGAAAAGAG&AUUAUUUUGGAA-UGUACCAGU	0	0.0695089045087389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN15258_c0_g1_378_TPlot.pdf
TRINITY_DN15259_c0_g1:218	si_a412	TRINITY_DN15259_c0_g1	205	227	218	-18.30	-12.30	0.672131147540984	6	1-14,227-214;15-20,211-206	x-x,213-212[BULt];21-21,205-205[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	AAUUUAUUUUUAGAUAUGAAUAA&UUGUUUAUAUUUAA--AUAAAUA	2	0.999501843830559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN15259_c0_g1_218_TPlot.pdf
TRINITY_DN15259_c0_g1:219	si_a411	TRINITY_DN15259_c0_g1	206	228	219	-17.90	-12.90	0.720670391061453	5	1-15,228-214;16-21,211-206	x-x,213-212[BULt]	((((((..(((((((((((((((&)))))))))))))))--))))))	AUUUAUUUUUAGAUAUGAAUAAA&UUUGUUUAUAUUUAA--AUAAAU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN15259_c0_g1_219_TPlot.pdf
TRINITY_DN15259_c0_g1:220	si_a410	TRINITY_DN15259_c0_g1	209	229	220	-17.80	-13.30	0.747191011235955	6.5	1-17,229-213	18-21,212-209[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAUUUUUAGAUAUGAAUAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN15259_c0_g1_220_TPlot.pdf
TRINITY_DN15259_c0_g1:221	si_a409	TRINITY_DN15259_c0_g1	210	230	221	-19.50	-13.30	0.682051282051282	6.5	2-18,229-213	1-1,230-230[UP5];19-21,212-210[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUUUUUAGAUAUGAAUAAAAG&GUUUUGUUUAUAUUUAAAUAA	3	0.999999997153094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN15259_c0_g1_221_TPlot.pdf
TRINITY_DN15259_c0_g1:222	si_a408	TRINITY_DN15259_c0_g1	211	231	222	-20.10	-13.80	0.686567164179104	6.5	1-1,231-231;3-19,229-213	2-2,230-230[SIL];20-21,212-211[UP3]	..(((((((((((((((((.(&).)))))))))))))))))..	UUUUUAGAUAUGAAUAAAAGA&UGUUUUGUUUAUAUUUAAAUA	2	0.999987485930559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN15259_c0_g1_222_TPlot.pdf
TRINITY_DN15259_c0_g1:223	si_a407	TRINITY_DN15259_c0_g1	212	232	223	-19.80	-14.00	0.707070707070707	6.5	2-2,231-231;4-20,229-213	1-1,232-232[UP5];3-3,230-230[SIL];21-21,212-212[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	UUUUAGAUAUGAAUAAAAGAU&UUGUUUUGUUUAUAUUUAAAU	3	0.999999985327344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN15259_c0_g1_223_TPlot.pdf
TRINITY_DN15259_c0_g1:224	si_a406	TRINITY_DN15259_c0_g1	213	233	224	-19.80	-13.90	0.702020202020202	7.5	3-3,231-231;5-21,229-213	1-2,233-232[UP5];4-4,230-230[SIL]	(((((((((((((((((.(..&..).)))))))))))))))))	UUUAGAUAUGAAUAAAAGAUU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999981583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN15259_c0_g1_224_TPlot.pdf
TRINITY_DN15259_c0_g1:225	si_a405	TRINITY_DN15259_c0_g1	214	234	225	-19.80	-13.00	0.656565656565657	9	4-4,231-231;6-21,229-214	1-3,234-232[UP5];5-5,230-230[SIL]	((((((((((((((((.(...&...).))))))))))))))))	UUAGAUAUGAAUAAAAGAUUC&AAUUGUUUUGUUUAUAUUUAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN15259_c0_g1_225_TPlot.pdf
TRINITY_DN15259_c0_g1:251	si_a888	TRINITY_DN15259_c0_g1	240	260	251	-22.80	-15.20	0.666666666666667	6.5	1-8,260-253;10-17,251-244;20-21,241-240	9-9,252-252[SIL];18-19,243-242[SIL]	((..((((((((.((((((((&)))))))).))))))))..))	CUAUUUGUUGCUUUGUUGAUU&AAUCAAUAUAGUAAUAAUAAG	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN15259_c0_g1_251_TPlot.pdf
TRINITY_DN15259_c0_g1:252	si_a887	TRINITY_DN15259_c0_g1	241	261	252	-22.90	-17.10	0.746724890829694	7	1-9,261-253;11-18,251-244	10-10,252-252[SIL];19-21,243-241[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAUUUGUUGCUUUGUUGAUUG&CAAUCAAUAUAGUAAUAAUAA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN15259_c0_g1_252_TPlot.pdf
TRINITY_DN15259_c0_g1:253	si_a886	TRINITY_DN15259_c0_g1	242	262	253	-25.30	-19.20	0.758893280632411	6.5	1-10,262-253;12-19,251-244	11-11,252-252[SIL];20-21,243-242[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AUUUGUUGCUUUGUUGAUUGU&GCAAUCAAUAUAGUAAUAAUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a886_TRINITY_DN15259_c0_g1_253_TPlot.pdf
TRINITY_DN15259_c0_g1:254	si_a885	TRINITY_DN15259_c0_g1	243	263	254	-25.60	-20.20	0.7890625	6	1-11,263-253;13-20,251-244	12-12,252-252[SIL];21-21,243-243[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	UUUGUUGCUUUGUUGAUUGUA&UGCAAUCAAUAUAGUAAUAAU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN15259_c0_g1_254_TPlot.pdf
TRINITY_DN15259_c0_g1:256	si_a883	TRINITY_DN15259_c0_g1	245	265	256	-27.20	-20.10	0.738970588235294	5	2-13,264-253;15-21,251-245	1-1,265-265[UP5];14-14,252-252[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UGUUGCUUUGUUGAUUGUAAA&GUUGCAAUCAAUAUAGUAAUA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN15259_c0_g1_256_TPlot.pdf
TRINITY_DN1525_c0_g2:1944	si_s820	TRINITY_DN1525_c0_g2	1935	1953	1944	-22.10	-14.58	0.65972850678733	7	1-14,1953-1940;19-21,1937-1935	15-18,1939-1938[AILq]	(((..--((((((((((((((&))))))))))))))....)))	UGUGG--CGUUAUUGAGAGAG&UUUUCUUAAUAAUGAAAAACA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN1525_c0_g2_1944_TPlot.pdf
TRINITY_DN15277_c0_g1:1258	si_s236	TRINITY_DN15277_c0_g1	1247	1267	1258	-29.60	-19.80	0.668918918918919	12	5-10,1263-1258;13-21,1255-1247	1-4,1267-1264[UP5];11-12,1257-1256[SIL]	(((((((((..((((((....&....))))))..)))))))))	AGAUGCCUGCCGAUUCCGGUU&AUAAGGAAUCAAUAGGCAUUU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN15277_c0_g1_1258_TPlot.pdf
TRINITY_DN15277_c0_g1:176	si_s518	TRINITY_DN15277_c0_g1	165	185	176	-24.60	-16.70	0.678861788617886	9	2-16,184-170;18-19,168-167	1-1,185-185[UP5];17-17,169-169[SIL];20-21,166-165[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	UAGAGUUCGGAUUGGGGAUGA&AUAUUCUUAAUUCGAAAUCAU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN15277_c0_g1_176_TPlot.pdf
TRINITY_DN15277_c0_g1:179	si_s515	TRINITY_DN15277_c0_g1	168	188	179	-24.80	-18.10	0.729838709677419	8.5	1-3,188-186;5-19,184-170	4-4,185-185[SIL];20-21,169-168[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AGUUCGGAUUGGGGAUGAAGA&UCUAUAUUCUUAAUUCGAAAU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN15277_c0_g1_179_TPlot.pdf
TRINITY_DN15277_c0_g1:181	si_s513	TRINITY_DN15277_c0_g1	170	190	181	-24.90	-18.80	0.755020080321285	7	2-5,189-186;7-21,184-170	1-1,190-190[UP5];6-6,185-185[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	UUCGGAUUGGGGAUGAAGAAA&AUUCUAUAUUCUUAAUUCGAA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN15277_c0_g1_181_TPlot.pdf
TRINITY_DN15277_c0_g1:184	si_a791	TRINITY_DN15277_c0_g1	173	194	184	-26.50	-18.10	0.683018867924528	10	3-9,192-186;12-21,182-173	1-2,194-193[UP5];10-11,185-183[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	GGAUUGGGGAUGAAGAAAAAGA&UAUUUUUCU-AUUUUCCAAUCC	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN15277_c0_g1_184_TPlot.pdf
TRINITY_DN15277_c0_g1:186	si_a552	TRINITY_DN15277_c0_g1	172	195	186	-33.10	-21.70	0.655589123867069	7.5	2-4,194-192;6-18,190-178;19-21,174-172	1-1,195-195[UP5];5-5,191-191[SIL];x-x,177-175[BULt]	(((...(((((((((((((.(((.&.))).)))))))))))))---)))	CGGAUUGGGGAUGAAGAAAAAGAG&AUCUAUUUCUUUAUCUCC---CCG	3	0.999837544122648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN15277_c0_g1_186_TPlot.pdf
TRINITY_DN15277_c0_g1:188	si_a550	TRINITY_DN15277_c0_g1	177	197	188	-30.90	-20.50	0.663430420711974	8	1-1,197-197;4-6,194-192;8-20,190-178	2-3,196-195[SIL];7-7,191-191[SIL];21-21,177-177[UP3]	.(((((((((((((.(((..(&)..))).))))))))))))).	UGGGGAUGAAGAAAAAGAGGG&CAAUCUAUUUCUUUAUCUCCC	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN15277_c0_g1_188_TPlot.pdf
TRINITY_DN15277_c0_g1:190	si_a548	TRINITY_DN15277_c0_g1	179	199	190	-27.20	-18.90	0.694852941176471	8	2-3,198-197;6-8,194-192;10-21,190-179	1-1,199-199[UP5];4-5,196-195[SIL];9-9,191-191[SIL]	((((((((((((.(((..((.&.))..))).))))))))))))	GGGAUGAAGAAAAAGAGGGAC&UUCAAUCUAUUUCUUUAUCUC	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN15277_c0_g1_190_TPlot.pdf
TRINITY_DN15277_c0_g1:191	si_a547	TRINITY_DN15277_c0_g1	180	199	191	-26.90	-18.30	0.680297397769517	8	1-4,199-196;7-9,194-192;11-21,190-180	5-6,195-195[AILq];10-10,191-191[SIL]	(((((((((((.(((.-((((&))))..))).)))))))))))	GGAUGAAGAAAAAGAG-GGAC&GUUCAAUCUAUUUCUUUAUCU	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN15277_c0_g1_191_TPlot.pdf
TRINITY_DN15277_c0_g1:2679	si_s547	TRINITY_DN15277_c0_g1	2665	2688	2679	-24.00	-15.70	0.654166666666667	6.5	1-15,2688-2674;16-21,2670-2665	x-x,2673-2671[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GUAUUAAUUAUUUUGUUUUGAUUG&CGAUCAAAAUAGAAU---UAAUAU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN15277_c0_g1_2679_TPlot.pdf
TRINITY_DN15277_c0_g1:988	si_s810	TRINITY_DN15277_c0_g1	976	997	988	-27.90	-19.50	0.698924731182796	7.5	2-14,996-984;15-17,982-980	1-1,997-997[UP5];x-x,983-983[BULt];18-21,979-976[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	UGCGGAGAAAGAGGUAACGAAA&CUUCGUUACCUUUU-CUUAAUA	4	0.999740549237147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN15277_c0_g1_988_TPlot.pdf
TRINITY_DN15289_c0_g1:683	si_s200	TRINITY_DN15289_c0_g1	669	692	683	-32.80	-22.50	0.685975609756098	6.5	1-11,692-682;13-16,681-678;17-21,673-669	12-12,x-x[BULq];x-x,677-674[BULt]	(((((....((((-(((((((((((&))))))))))).))))----)))))	CACAAACUCCUGG-ACAUUCCAAAG&UUUUGGAAUGUACCAG----UUGUG	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN15289_c0_g1_683_TPlot.pdf
TRINITY_DN15289_c0_g1:686	si_s197	TRINITY_DN15289_c0_g1	676	695	686	-29.20	-20.90	0.715753424657534	7	3-14,693-682;16-19,681-678	1-2,695-694[UP5];15-15,x-x[BULq];20-21,677-676[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	UCCUGG-ACAUUCCAAAGUUC&UUAUUUUGGAAUGUACCAGUU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN15289_c0_g1_686_TPlot.pdf
TRINITY_DN15289_c0_g1:849	si_s78	TRINITY_DN15289_c0_g1	838	867	849	-26.20	-19.40	0.740458015267176	22	1-9,867-859;10-21,849-838	x-x,858-850[BULt]	((((((((((((.........(((((((((&)))))))))---------))))))))))))	GGAGGAAAGGAGAAUUGCCCUGGAAGAAAA&UUUUUUUCU---------UUCCUUUCUUCU	4	0.999999999999757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15289_c0_g1_849_TPlot.pdf
TRINITY_DN15289_c0_g1:851	si_s71	TRINITY_DN15289_c0_g1	840	863	851	-25.70	-18.20	0.708171206225681	14.5	1-6,863-858;10-21,851-840	7-9,857-852[AILt]	((((((((((((......((((((&))))))---...))))))))))))	AGGAAAGGAGAAUUGCCCUGGAAG&CUUCUA---UUUUUUUUCUUUCCU	2	0.999999998088998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN15289_c0_g1_851_TPlot.pdf
TRINITY_DN1528_c0_g1:1898	si_s101	TRINITY_DN1528_c0_g1	1886	1907	1898	-32.50	-22.60	0.695384615384615	9.5	1-12,1907-1896;13-16,1894-1891	x-x,1895-1895[BULt];17-21,1890-1886[UP3]	.....((((.((((((((((((&))))))))))))-)))).....	CGACCUCCGCAUCCGGAGUGAA&UUCGCUUCGGAU-UGGAAAAUA	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN1528_c0_g1_1898_TPlot.pdf
TRINITY_DN1528_c0_g1:1899	si_s100	TRINITY_DN1528_c0_g1	1887	1908	1899	-33.70	-25.50	0.756676557863501	7.5	1-13,1908-1896;14-17,1894-1891	x-x,1895-1895[BULt];18-21,1890-1887[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	GACCUCCGCAUCCGGAGUGAAG&CUUCGCUUCGGAU-UGGAAAAU	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN1528_c0_g1_1899_TPlot.pdf
TRINITY_DN1528_c0_g1:1900	si_s99	TRINITY_DN1528_c0_g1	1888	1909	1900	-34.60	-27.10	0.783236994219653	6.5	1-14,1909-1896;15-18,1894-1891	x-x,1895-1895[BULt];19-21,1890-1888[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	ACCUCCGCAUCCGGAGUGAAGA&UCUUCGCUUCGGAU-UGGAAAA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN1528_c0_g1_1900_TPlot.pdf
TRINITY_DN1528_c0_g1:2315	si_a495	TRINITY_DN1528_c0_g1	2304	2324	2315	-31.90	-22.30	0.699059561128527	10.5	4-8,2321-2317;10-14,2315-2311;16-21,2309-2304	1-3,2324-2322[UP5];9-9,2316-2316[SIL];15-15,2310-2310[SIL]	((((((.(((((.(((((...&...))))).))))).))))))	GGAGGAGGAGGAUCGACACAA&AUAUGUCGUUUUUCGUCUUCC	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1528_c0_g1_2315_TPlot.pdf
TRINITY_DN1528_c0_g1:406	si_s738	TRINITY_DN1528_c0_g1	395	422	406	-37.60	-25.06	0.666489361702128	21.5	1-8,422-415;12-21,404-395	9-11,414-405[AILt]	((((((((((..........((((((((&))))))))-------...))))))))))	GGGUCAAUCUCAAGAAGUACUACCCGUC&GACGGGUG-------AAUAGAUUGACCU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s738_TRINITY_DN1528_c0_g1_406_TPlot.pdf
TRINITY_DN15292_c0_g1:1265	si_s82	TRINITY_DN15292_c0_g1	1250	1275	1265	-28.90	-20.10	0.695501730103806	14	1-7,1275-1269;8-11,1267-1264;12-21,1259-1250	x-x,1268-1268[BULt];x-x,1263-1260[BULt]	((((((((((....((((.(((((((&)))))))-))))----))))))))))	AGGAGGAAGAUGAAGAGGAAGAGGAA&UUUCUUU-CCUU----UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN15292_c0_g1_1265_TPlot.pdf
TRINITY_DN15292_c0_g1:1266	si_s80	TRINITY_DN15292_c0_g1	1252	1275	1266	-28.20	-20.10	0.712765957446809	7.5	1-10,1275-1266;11-13,1264-1262;14-21,1259-1252	x-x,1265-1265[BULt];x-x,1261-1260[BULt]	((((((((..(((.((((((((((&))))))))))-)))--))))))))	GAGGAAGAUGAAGAGGAAGAGGAA&UUUUUCUUUC-CUU--UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN15292_c0_g1_1266_TPlot.pdf
TRINITY_DN15292_c0_g1:1267	si_s88	TRINITY_DN15292_c0_g1	1255	1274	1267	-34.80	-23.40	0.672413793103448	6.5	1-3,1274-1272;6-17,1271-1260;18-21,1258-1255	4-5,x-x[BULq];x-x,1259-1259[BULt]	((((.((((((((((((--(((&)))..))))))))))))-))))	GAAGAUGAAGAGGAAGA--GGA&UCCUUUCUUCUUCUUCG-CUUC	3	0.99999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN15292_c0_g1_1267_TPlot.pdf
TRINITY_DN15292_c0_g1:1268	si_a547	TRINITY_DN15292_c0_g1	1257	1276	1268	-26.90	-17.50	0.650557620817844	8.5	1-4,1276-1273;7-9,1271-1269;11-21,1267-1257	5-6,1272-1272[AILq];10-10,1268-1268[SIL]	(((((((((((.(((.-((((&))))..))).)))))))))))	AGAUGAAGAGGAAGAG-GAAC&GUUCAAUCUAUUUCUUUAUCU	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN15292_c0_g1_1268_TPlot.pdf
TRINITY_DN15292_c0_g1:1269	si_a546	TRINITY_DN15292_c0_g1	1258	1277	1269	-28.60	-20.10	0.702797202797203	8	1-5,1277-1273;8-10,1271-1269;12-21,1267-1258	6-7,1272-1272[AILq];11-11,1268-1268[SIL]	((((((((((.(((.-(((((&)))))..))).))))))))))	GAUGAAGAGGAAGAG-GAACC&GGUUCAAUCUAUUUCUUUAUC	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN15292_c0_g1_1269_TPlot.pdf
TRINITY_DN15292_c0_g1:1463	si_a400	TRINITY_DN15292_c0_g1	1452	1472	1463	-22.80	-15.30	0.671052631578947	4.5	1-12,1472-1461;14-17,1459-1456;19-21,1454-1452	13-13,1460-1460[SIL];18-18,1455-1455[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	UGUCAACGUAACAAUUCUGUG&UAUAGAAUUGUUUUGUUUAUA	4	0.999999962234629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN15292_c0_g1_1463_TPlot.pdf
TRINITY_DN15292_c0_g1:1464	si_a399	TRINITY_DN15292_c0_g1	1453	1473	1464	-22.60	-14.70	0.650442477876106	7.5	2-13,1472-1461;15-18,1459-1456	1-1,1473-1473[UP5];14-14,1460-1460[SIL];19-21,1455-1453[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	GUCAACGUAACAAUUCUGUGA&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999995712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN15292_c0_g1_1464_TPlot.pdf
TRINITY_DN15292_c0_g1:1465	si_a398	TRINITY_DN15292_c0_g1	1454	1474	1465	-22.40	-14.70	0.65625	8.5	3-14,1472-1461;16-19,1459-1456	1-2,1474-1473[UP5];15-15,1460-1460[SIL];20-21,1455-1454[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UCAACGUAACAAUUCUGUGAA&AAUAUAGAAUUGUUUUGUUUA	2	0.999999560079156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN15292_c0_g1_1465_TPlot.pdf
TRINITY_DN15292_c0_g1:860	si_a320	TRINITY_DN15292_c0_g1	850	869	860	-24.40	-16.80	0.688524590163935	6	1-8,869-862;10-17,860-853;20-21,851-850	9-9,861-861[SIL];18-19,852-852[AILq]	((.-((((((((.((((((((&)))))))).))))))))..))	GAG-GAAGAAAUGAUGGAUGA&UUAUCCAUGAUUUUUUUAUUC	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN15292_c0_g1_860_TPlot.pdf
TRINITY_DN15292_c0_g1:861	si_a319	TRINITY_DN15292_c0_g1	850	870	861	-22.40	-16.80	0.75	8	2-9,869-862;11-18,860-853	1-1,870-870[UP5];10-10,861-861[SIL];19-21,852-850[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	GAGGAAGAAAUGAUGGAUGAU&UUUAUCCAUGAUUUUUUUAUU	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN15292_c0_g1_861_TPlot.pdf
TRINITY_DN15292_c0_g1:862	si_a318	TRINITY_DN15292_c0_g1	851	871	862	-22.50	-16.80	0.746666666666667	9	3-10,869-862;12-19,860-853	1-2,871-870[UP5];11-11,861-861[SIL];20-21,852-851[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	AGGAAGAAAUGAUGGAUGAUG&AUUUAUCCAUGAUUUUUUUAU	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN15292_c0_g1_862_TPlot.pdf
TRINITY_DN15292_c0_g1:863	si_a317	TRINITY_DN15292_c0_g1	852	872	863	-24.30	-16.80	0.691358024691358	10	4-11,869-862;13-20,860-853	1-3,872-870[UP5];12-12,861-861[SIL];21-21,852-852[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	GGAAGAAAUGAUGGAUGAUGA&GAUUUAUCCAUGAUUUUUUUA	2	0.999482891835849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN15292_c0_g1_863_TPlot.pdf
TRINITY_DN15292_c0_g1:990	si_s82	TRINITY_DN15292_c0_g1	966	999	990	-28.90	-20.30	0.70242214532872	30	1-11,999-989;12-20,975-967	x-x,988-976[BULt];21-21,966-966[UP3]	.(((((((((.............(((((((((((&)))))))))))-------------))))))))).	UAGAAGAAGAAAUGAUUGACGACGAGGAAGGAGA&UUUCUUUCCUU-------------UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN15292_c0_g1_990_TPlot.pdf
TRINITY_DN15292_c0_g1:991	si_s81	TRINITY_DN15292_c0_g1	967	1000	991	-28.90	-21.20	0.73356401384083	29	1-12,1000-989;13-21,975-967	x-x,988-976[BULt]	(((((((((.............((((((((((((&))))))))))))-------------)))))))))	AGAAGAAGAAAUGAUUGACGACGAGGAAGGAGAA&UUUUCUUUCCUU-------------UCUUCUUCU	3	0.999999999988202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN15292_c0_g1_991_TPlot.pdf
TRINITY_DN15292_c0_g1:992	si_s80	TRINITY_DN15292_c0_g1	968	1001	992	-28.20	-20.30	0.719858156028369	16.5	2-13,1000-989;14-21,975-968	1-1,1001-1001[UP5];x-x,988-976[BULt]	((((((((.............((((((((((((.&.))))))))))))-------------))))))))	GAAGAAGAAAUGAUUGACGACGAGGAAGGAGAAG&UUUUUCUUUCCUU-------------UCUUCUUC	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN15292_c0_g1_992_TPlot.pdf
TRINITY_DN15295_c0_g1:894	si_s94	TRINITY_DN15295_c0_g1	882	905	894	-35.50	-23.70	0.667605633802817	10.5	1-8,905-898;9-10,895-894;11-18,892-885;21-21,882-882	x-x,897-896[BULt];x-x,893-893[BULt];19-20,884-883[SIL]	(..((((((((.((..((((((((&))))))))--))-))))))))..)	CUUUCCGAGGCUGAAAAGGAGGAG&CUUCUUCU--UC-GCUUCGGAUUG	4	0.999999822393667	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN15295_c0_g1_894_TPlot.pdf
TRINITY_DN1529_c0_g1:3809	si_a66	TRINITY_DN1529_c0_g1	3799	3819	3809	-26.70	-17.40	0.651685393258427	6	1-3,3819-3817;4-14,3815-3805;16-19,3804-3801	x-x,3816-3816[BULt];15-15,x-x[BULq];20-21,3800-3799[UP3]	..((((-(((((((((((.(((&)))-))))))))))).))))..	CCAAAC-AUUUGAAAGAGUGCG&CGC-UUCUUUCAAAUUGUUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN1529_c0_g1_3809_TPlot.pdf
TRINITY_DN1529_c0_g1:4312	si_s76	TRINITY_DN1529_c0_g1	4300	4321	4312	-23.60	-15.50	0.656779661016949	13	7-12,4315-4310;13-21,4308-4300	1-6,4321-4316[UP5];x-x,4309-4309[BULt]	(((((((((.((((((......&......))))))-)))))))))	AAGAAAGGACAAGAAAUCUUGC&AUUUUUUUUCUU-UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1529_c0_g1_4312_TPlot.pdf
TRINITY_DN1529_c0_g1:4409	si_a658	TRINITY_DN1529_c0_g1	4398	4420	4409	-33.40	-22.20	0.664670658682635	10	2-4,4419-4417;5-7,4415-4413;9-19,4410-4400	1-1,4420-4420[UP5];x-x,4416-4416[BULt];8-8,4412-4411[AILt];20-21,4399-4398[UP3]	..(((((((((((..(((.(((.&.)))-)))-.)))))))))))..	AUUCAAUAGGCGUAAUCCACGAA&AUCG-GGA-AAUGCCUAUUGAUU	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN1529_c0_g1_4409_TPlot.pdf
TRINITY_DN1529_c0_g1:4627	si_s698	TRINITY_DN1529_c0_g1	4615	4636	4627	-27.00	-18.10	0.67037037037037	6	1-3,4636-4634;5-18,4632-4619;19-21,4617-4615	4-4,4633-4633[SIL];x-x,4618-4618[BULt]	(((.((((((((((((((.(((&))).))))))))))))))-)))	UUCGGCUGAUAAAUCGAUCAGU&AUUAGUCGAUUUAUUAGU-GAA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN1529_c0_g1_4627_TPlot.pdf
TRINITY_DN1529_c0_g1:4629	si_s696	TRINITY_DN1529_c0_g1	4618	4638	4629	-26.30	-17.60	0.669201520912548	9	3-5,4636-4634;7-20,4632-4619	1-2,4638-4637[UP5];6-6,4633-4633[SIL];21-21,4618-4618[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	GGCUGAUAAAUCGAUCAGUAU&UAAUUAGUCGAUUUAUUAGUG	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN1529_c0_g1_4629_TPlot.pdf
TRINITY_DN152_c0_g1:1311	si_a69	TRINITY_DN152_c0_g1	1300	1320	1311	-24.00	-16.00	0.666666666666667	8	1-12,1320-1309;14-18,1307-1303	13-13,1308-1308[SIL];19-21,1302-1300[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UCAGAGAGGAGUUUGAGAGAG&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999987955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN152_c0_g1_1311_TPlot.pdf
TRINITY_DN152_c0_g1:3468	si_a784	TRINITY_DN152_c0_g1	3457	3475	3468	-24.70	-17.20	0.696356275303644	9	2-8,3474-3468;11-21,3467-3457	1-1,3475-3475[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	AAAGUGGAAGA--GGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999738819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN152_c0_g1_3468_TPlot.pdf
TRINITY_DN152_c0_g1:3474	si_s74	TRINITY_DN152_c0_g1	3462	3483	3474	-25.00	-16.30	0.652	7.5	1-2,3483-3482;5-16,3479-3468;17-21,3466-3462	3-4,3481-3480[SIL];x-x,3467-3467[BULt]	(((((.((((((((((((..((&))..))))))))))))-)))))	GGAAGAGGAGGAGAAAAACAAG&CUAUUUUUUUUCUUUC-CUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN152_c0_g1_3474_TPlot.pdf
TRINITY_DN152_c0_g1:4263	si_a76	TRINITY_DN152_c0_g1	4251	4272	4263	-21.20	-14.00	0.660377358490566	9	2-11,4271-4262;12-18,4260-4254	1-1,4272-4272[UP5];x-x,4261-4261[BULt];19-21,4253-4251[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	CAAAGUGAUGAAGAAGCAAUUG&AAAUUGUUUUU-CAUUAUUAAG	3	0.999999999998701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN152_c0_g1_4263_TPlot.pdf
TRINITY_DN152_c0_g1:4264	si_a75	TRINITY_DN152_c0_g1	4252	4273	4264	-21.30	-14.00	0.657276995305164	10	3-12,4271-4262;13-19,4260-4254	1-2,4273-4272[UP5];x-x,4261-4261[BULt];20-21,4253-4252[UP3]	..(((((((.((((((((((..&..))))))))))-)))))))..	AAAGUGAUGAAGAAGCAAUUGG&CAAAUUGUUUUU-CAUUAUUAA	2	0.9999999976387	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN152_c0_g1_4264_TPlot.pdf
TRINITY_DN152_c0_g1:4292	si_s77	TRINITY_DN152_c0_g1	4278	4301	4292	-25.50	-16.60	0.650980392156863	17.5	6-10,4296-4292;11-21,4288-4278	1-5,4301-4297[UP5];x-x,4291-4289[BULt]	(((((((((((...(((((.....&.....)))))---)))))))))))	GAAGAAGGGAGUGCAGAAGCCCAA&UUUUUUUUCU---UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN152_c0_g1_4292_TPlot.pdf
TRINITY_DN152_c0_g1:4447	si_s93	TRINITY_DN152_c0_g1	4436	4456	4447	-34.80	-24.60	0.706896551724138	6	1-15,4456-4442;17-18,4440-4439	16-16,4441-4441[SIL];19-21,4438-4436[UP3]	...((.(((((((((((((((&))))))))))))))).))...	AAGCCCAAGUGAAGAAGGAGA&UCUUCUUCUUCGCUUCGGAUU	2	0.996067721423274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN152_c0_g1_4447_TPlot.pdf
TRINITY_DN152_c0_g1:4448	si_s92	TRINITY_DN152_c0_g1	4437	4457	4448	-34.90	-25.50	0.730659025787966	4.5	1-16,4457-4442;18-19,4440-4439	17-17,4441-4441[SIL];20-21,4438-4437[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	AGCCCAAGUGAAGAAGGAGAA&UUCUUCUUCUUCGCUUCGGAU	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN152_c0_g1_4448_TPlot.pdf
TRINITY_DN152_c0_g1:4449	si_s91	TRINITY_DN152_c0_g1	4438	4458	4449	-34.70	-26.40	0.760806916426513	3.5	1-17,4458-4442;19-20,4440-4439	18-18,4441-4441[SIL];21-21,4438-4438[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	GCCCAAGUGAAGAAGGAGAAA&UUUCUUCUUCUUCGCUUCGGA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN152_c0_g1_4449_TPlot.pdf
TRINITY_DN152_c0_g1:4451	si_s89	TRINITY_DN152_c0_g1	4440	4460	4451	-35.30	-26.40	0.747875354107649	4.5	2-19,4459-4442	1-1,4460-4460[UP5];20-21,4441-4440[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CCAAGUGAAGAAGGAGAAAGA&CCUUUCUUCUUCUUCGCUUCG	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN152_c0_g1_4451_TPlot.pdf
TRINITY_DN152_c0_g1:4452	si_s88	TRINITY_DN152_c0_g1	4441	4461	4452	-34.80	-26.40	0.758620689655172	5.5	3-20,4459-4442	1-2,4461-4460[UP5];21-21,4441-4441[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAAGUGAAGAAGGAGAAAGAA&UCCUUUCUUCUUCUUCGCUUC	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN152_c0_g1_4452_TPlot.pdf
TRINITY_DN152_c0_g1:4453	si_s87	TRINITY_DN152_c0_g1	4442	4462	4453	-32.90	-26.40	0.802431610942249	6.5	4-21,4459-4442	1-3,4462-4460[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAGUGAAGAAGGAGAAAGAAG&UUCCUUUCUUCUUCUUCGCUU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN152_c0_g1_4453_TPlot.pdf
TRINITY_DN152_c0_g1:4454	si_s86	TRINITY_DN152_c0_g1	4443	4463	4454	-32.90	-25.60	0.778115501519757	8.5	5-21,4459-4443	1-4,4463-4460[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGUGAAGAAGGAGAAAGAAGA&UUUCCUUUCUUCUUCUUCGCU	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN152_c0_g1_4454_TPlot.pdf
TRINITY_DN152_c0_g1:4455	si_s85	TRINITY_DN152_c0_g1	4444	4464	4455	-33.80	-24.30	0.718934911242604	10.5	6-21,4459-4444	1-5,4464-4460[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUGAAGAAGGAGAAAGAAGAC&CUUUCCUUUCUUCUUCUUCGC	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN152_c0_g1_4455_TPlot.pdf
TRINITY_DN152_c0_g1:4456	si_s79	TRINITY_DN152_c0_g1	4444	4465	4456	-26.20	-19.70	0.751908396946565	8.5	3-11,4463-4455;12-19,4453-4446	1-2,4465-4464[UP5];x-x,4454-4454[BULt];20-21,4445-4444[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	GUGAAGAAGGAGAAAGAAGACA&UUUUUUCUUUC-CUUUCUUCUU	2	0.99999988670845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN152_c0_g1_4456_TPlot.pdf
TRINITY_DN152_c0_g1:4457	si_s78	TRINITY_DN152_c0_g1	4445	4466	4457	-26.20	-19.70	0.751908396946565	9.5	4-12,4463-4455;13-20,4453-4446	1-3,4466-4464[UP5];x-x,4454-4454[BULt];21-21,4445-4445[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	UGAAGAAGGAGAAAGAAGACAA&UUUUUUUCUUUC-CUUUCUUCU	2	0.999999829166825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN152_c0_g1_4457_TPlot.pdf
TRINITY_DN152_c0_g1:4458	si_s77	TRINITY_DN152_c0_g1	4446	4467	4458	-25.50	-19.30	0.756862745098039	4.5	1-3,4467-4465;5-13,4463-4455;14-21,4453-4446	4-4,4464-4464[SIL];x-x,4454-4454[BULt]	((((((((.(((((((((.(((&))).)))))))))-))))))))	GAAGAAGGAGAAAGAAGACAAA&UUUUUUUUCUUUC-CUUUCUUC	2	0.99999967771344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN152_c0_g1_4458_TPlot.pdf
TRINITY_DN152_c0_g1:4459	si_s76	TRINITY_DN152_c0_g1	4447	4468	4459	-23.60	-16.30	0.690677966101695	5.5	2-4,4467-4465;6-14,4463-4455;15-21,4453-4447	1-1,4468-4468[UP5];5-5,4464-4464[SIL];x-x,4454-4454[BULt]	(((((((.(((((((((.(((.&.))).)))))))))-)))))))	AAGAAGGAGAAAGAAGACAAAG&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN152_c0_g1_4459_TPlot.pdf
TRINITY_DN152_c0_g1:4466	si_s69	TRINITY_DN152_c0_g1	4455	4475	4466	-23.40	-16.10	0.688034188034188	6.5	2-7,4474-4469;9-11,4467-4465;13-21,4463-4455	1-1,4475-4475[UP5];8-8,4468-4468[SIL];12-12,4464-4464[SIL]	(((((((((.(((.((((((.&.)))))).))).)))))))))	GAAAGAAGACAAAGAGGAGUA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN152_c0_g1_4466_TPlot.pdf
TRINITY_DN152_c0_g1:4508	si_s83	TRINITY_DN152_c0_g1	4497	4518	4508	-30.90	-20.20	0.653721682847896	6.5	1-7,4518-4512;9-20,4509-4498	8-8,4511-4510[AILt];21-21,4497-4497[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	AAAGGAGAAGAAAAAGAAGGAA&UUCUUUC-CUUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN152_c0_g1_4508_TPlot.pdf
TRINITY_DN152_c0_g1:4509	si_s82	TRINITY_DN152_c0_g1	4498	4519	4509	-28.90	-21.10	0.730103806228374	5.5	1-8,4519-4512;10-21,4509-4498	9-9,4511-4510[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	AAGGAGAAGAAAAAGAAGGAAA&UUUCUUUC-CUUUCUUCUUCUU	3	0.999999999997362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN152_c0_g1_4509_TPlot.pdf
TRINITY_DN152_c0_g1:4513	si_s79	TRINITY_DN152_c0_g1	4501	4522	4513	-26.20	-19.40	0.740458015267176	6.5	1-11,4522-4512;13-21,4509-4501	12-12,4511-4510[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	GAGAAGAAAAAGAAGGAAAAGA&UUUUUUCUUUC-CUUUCUUCUU	3	0.999999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN152_c0_g1_4513_TPlot.pdf
TRINITY_DN152_c0_g1:4515	si_s77	TRINITY_DN152_c0_g1	4503	4524	4515	-25.50	-18.10	0.709803921568627	4.5	1-13,4524-4512;15-21,4509-4503	14-14,4511-4510[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	GAAGAAAAAGAAGGAAAAGAAG&UUUUUUUUCUUUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN152_c0_g1_4515_TPlot.pdf
TRINITY_DN152_c0_g1:4640	si_a70	TRINITY_DN152_c0_g1	4629	4649	4640	-23.90	-15.60	0.652719665271967	7.5	2-9,4648-4641;11-11,4639-4639;13-21,4637-4629	1-1,4649-4649[UP5];10-10,4640-4640[SIL];12-12,4638-4638[SIL]	(((((((((.(.((((((((.&.)))))))).).)))))))))	GGUGAAGAAGGCUUUGAAAGC&UCUUUCAAAUUGUUUUUCAUU	4	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN152_c0_g1_4640_TPlot.pdf
TRINITY_DN152_c0_g1:4888	si_s79	TRINITY_DN152_c0_g1	4873	4897	4888	-26.20	-17.70	0.675572519083969	7.5	2-13,4896-4885;15-17,4883-4881;18-21,4876-4873	1-1,4897-4897[UP5];14-14,4884-4884[SIL];x-x,4880-4877[BULt]	((((....(((.((((((((((((.&.)))))))))))).)))----))))	GAGAAAACAGACAGGAAAGAAAAGG&UUUUUUCUUUCCUUUCU----UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN152_c0_g1_4888_TPlot.pdf
TRINITY_DN152_c0_g1:4890	si_s77	TRINITY_DN152_c0_g1	4879	4899	4890	-25.50	-18.30	0.717647058823529	6	2-15,4898-4885;17-19,4883-4881	1-1,4899-4899[UP5];16-16,4884-4884[SIL];20-21,4880-4879[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	ACAGACAGGAAAGAAAAGGAG&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999999311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN152_c0_g1_4890_TPlot.pdf
TRINITY_DN152_c0_g1:4891	si_s76	TRINITY_DN152_c0_g1	4880	4900	4891	-23.60	-18.30	0.775423728813559	7	3-16,4898-4885;18-20,4883-4881	1-2,4900-4899[UP5];17-17,4884-4884[SIL];21-21,4880-4880[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	CAGACAGGAAAGAAAAGGAGA&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999972944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN152_c0_g1_4891_TPlot.pdf
TRINITY_DN152_c0_g1:4892	si_s75	TRINITY_DN152_c0_g1	4881	4901	4892	-24.00	-18.30	0.7625	8	4-17,4898-4885;19-21,4883-4881	1-3,4901-4899[UP5];18-18,4884-4884[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	AGACAGGAAAGAAAAGGAGAA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999990973786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN152_c0_g1_4892_TPlot.pdf
TRINITY_DN152_c0_g1:4893	si_s74	TRINITY_DN152_c0_g1	4882	4902	4893	-25.00	-17.10	0.684	10	5-18,4898-4885;20-21,4883-4882	1-4,4902-4899[UP5];19-19,4884-4884[SIL]	((.((((((((((((((....&....)))))))))))))).))	GACAGGAAAGAAAAGGAGAAA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN152_c0_g1_4893_TPlot.pdf
TRINITY_DN152_c0_g1:4894	si_s73	TRINITY_DN152_c0_g1	4883	4904	4894	-24.00	-16.90	0.704166666666667	9	1-3,4904-4902;5-19,4899-4885	4-4,4901-4900[AILt];20-21,4884-4883[UP3]	..(((((((((((((((..(((&)))-.)))))))))))))))..	ACAGGAAAGAAAAGGAGAAAGA&UCU-AUUUUUUUUCUUUCCUUU	2	0.999999999998112	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN152_c0_g1_4894_TPlot.pdf
TRINITY_DN152_c0_g1:4897	si_s70	TRINITY_DN152_c0_g1	4886	4907	4897	-25.80	-19.50	0.755813953488372	8	2-6,4906-4902;8-21,4899-4886	1-1,4907-4907[UP5];7-7,4901-4900[AILt]	((((((((((((((..(((((.&.)))))-.))))))))))))))	GGAAAGAAAAGGAGAAAGAAGA&ACUUCU-AUUUUUUUUCUUUCC	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN152_c0_g1_4897_TPlot.pdf
TRINITY_DN152_c0_g1:5044	si_s71	TRINITY_DN152_c0_g1	5033	5053	5044	-25.70	-17.28	0.672373540856031	9	1-3,5053-5051;7-20,5047-5034	4-6,5050-5048[SIL];21-21,5033-5033[UP3]	.((((((((((((((...(((&)))...)))))))))))))).	CGGAAAGAAAAGAAAGGCGAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN152_c0_g1_5044_TPlot.pdf
TRINITY_DN152_c0_g1:5048	si_s81	TRINITY_DN152_c0_g1	5038	5057	5048	-28.90	-18.80	0.650519031141869	4	1-7,5057-5051;9-16,5049-5042;18-21,5041-5038	8-8,5050-5050[SIL];17-17,x-x[BULq]	((((-((((((((.(((((((&))))))).)))))))).))))	AGAA-AAGAAAGGCGAGAAAA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN152_c0_g1_5048_TPlot.pdf
TRINITY_DN152_c0_g1:5055	si_s74	TRINITY_DN152_c0_g1	5044	5069	5055	-25.00	-17.60	0.704	13.5	1-5,5069-5065;6-14,5059-5051;16-21,5049-5044	x-x,5064-5060[BULt];15-15,5050-5050[SIL]	((((((.(((((((((.....(((((&)))))-----))))))))).))))))	GAAAGGCGAGAAAAGAACGCCGAUAG&CUAUU-----UUUUUUCUUUCCUUUC	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN152_c0_g1_5055_TPlot.pdf
TRINITY_DN152_c0_g1:6105	si_s481	TRINITY_DN152_c0_g1	6093	6114	6105	-23.00	-15.40	0.669565217391304	7	1-11,6114-6104;14-21,6100-6093	12-13,6103-6101[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	UAUUUAGAAUUAAUAUGGGAUU&GAUCCUAUAUU-UAUUUAAAUA	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN152_c0_g1_6105_TPlot.pdf
TRINITY_DN15309_c0_g1:1210	si_a566	TRINITY_DN15309_c0_g1	1199	1220	1210	-36.40	-23.72	0.651648351648352	10	2-9,1219-1212;13-21,1207-1199	1-1,1220-1220[UP5];10-12,1211-1208[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	AAAUAUGCGCCAACACGGGGAU&CUCCCCGUG-AAUCGUAUGUUU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN15309_c0_g1_1210_TPlot.pdf
TRINITY_DN1530_c0_g1:950	si_a84	TRINITY_DN1530_c0_g1	939	960	950	-24.90	-17.20	0.690763052208835	5.5	1-9,960-952;10-19,950-941	x-x,951-951[BULt];20-21,940-939[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	CCCUUUUUCUUACAUGAUGAAA&UUUCAUUAU-UAAGAAAAGGUA	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN1530_c0_g1_950_TPlot.pdf
TRINITY_DN1530_c0_g1:952	si_a83	TRINITY_DN1530_c0_g1	940	961	952	-24.50	-18.10	0.738775510204082	4.5	1-10,961-952;11-20,950-941	x-x,951-951[BULt];21-21,940-940[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	CCUUUUUCUUACAUGAUGAAAA&UUUUCAUUAU-UAAGAAAAGGU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN1530_c0_g1_952_TPlot.pdf
TRINITY_DN1530_c0_g1:953	si_a82	TRINITY_DN1530_c0_g1	941	962	953	-23.70	-18.50	0.780590717299578	3.5	1-11,962-952;12-21,950-941	x-x,951-951[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	CUUUUUCUUACAUGAUGAAAAA&UUUUUCAUUAU-UAAGAAAAGG	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN1530_c0_g1_953_TPlot.pdf
TRINITY_DN1530_c0_g1:954	si_a81	TRINITY_DN1530_c0_g1	942	963	954	-23.00	-17.50	0.760869565217391	4	1-12,963-952;13-21,950-942	x-x,951-951[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	UUUUUCUUACAUGAUGAAAAAU&GUUUUUCAUUAU-UAAGAAAAG	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN1530_c0_g1_954_TPlot.pdf
TRINITY_DN1530_c0_g1:955	si_a80	TRINITY_DN1530_c0_g1	943	964	955	-22.10	-17.70	0.800904977375566	3	1-13,964-952;14-21,950-943	x-x,951-951[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	UUUUCUUACAUGAUGAAAAAUA&UGUUUUUCAUUAU-UAAGAAAA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1530_c0_g1_955_TPlot.pdf
TRINITY_DN1530_c0_g1:956	si_a79	TRINITY_DN1530_c0_g1	944	965	956	-22.20	-16.90	0.761261261261261	4	2-14,964-952;15-21,950-944	1-1,965-965[UP5];x-x,951-951[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	UUUCUUACAUGAUGAAAAAUAC&UUGUUUUUCAUUAU-UAAGAAA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1530_c0_g1_956_TPlot.pdf
TRINITY_DN15314_c0_g1:834	si_s315	TRINITY_DN15314_c0_g1	823	844	834	-31.60	-21.90	0.693037974683544	7	2-8,843-837;9-17,835-827	1-1,844-844[UP5];x-x,836-836[BULt];18-21,826-823[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	CCCAAACAAGAAGAGACAGAAG&AUUCUGUC-CUUCUUGUUACAA	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN15314_c0_g1_834_TPlot.pdf
TRINITY_DN15314_c0_g1:835	si_s314	TRINITY_DN15314_c0_g1	824	845	835	-31.50	-21.90	0.695238095238095	8	3-9,843-837;10-18,835-827	1-2,845-844[UP5];x-x,836-836[BULt];19-21,826-824[UP3]	...(((((((((.(((((((..&..)))))))-)))))))))...	CCAAACAAGAAGAGACAGAAGC&AAUUCUGUC-CUUCUUGUUACA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN15314_c0_g1_835_TPlot.pdf
TRINITY_DN15314_c0_g1:838	si_s312	TRINITY_DN15314_c0_g1	826	847	838	-29.00	-21.90	0.755172413793103	10	5-11,843-837;12-20,835-827	1-4,847-844[UP5];x-x,836-836[BULt];21-21,826-826[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	AAACAAGAAGAGACAGAAGCAG&AAAAUUCUGUC-CUUCUUGUUA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN15314_c0_g1_838_TPlot.pdf
TRINITY_DN15326_c1_g1:375	si_s742	TRINITY_DN15326_c1_g1	363	384	375	-31.40	-20.90	0.665605095541401	9	1-3,384-382;5-15,380-370;16-16,368-368	4-4,381-381[SIL];x-x,369-369[BULt];17-21,367-363[UP3]	.....(.(((((((((((.(((&))).)))))))))))-).....	AUGCCGUGUCAAUCUGUUGACC&GGUGAAUAGAUUGAC-CUUAAA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN15326_c1_g1_375_TPlot.pdf
TRINITY_DN15326_c1_g1:482	si_a10	TRINITY_DN15326_c1_g1	471	491	482	-29.50	-19.40	0.657627118644068	8	1-4,491-488;7-17,485-475	5-6,487-486[SIL];18-21,474-471[UP3]	....(((((((((((..((((&))))..)))))))))))....	GAGCAAUAGGCUUUCAAUUCA&UGAAGAGAAAGCCUAUUUAUU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN15326_c1_g1_482_TPlot.pdf
TRINITY_DN15326_c1_g1:483	si_a9	TRINITY_DN15326_c1_g1	472	492	483	-29.60	-20.10	0.679054054054054	7	1-5,492-488;8-18,485-475	6-7,487-486[SIL];19-21,474-472[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	AGCAAUAGGCUUUCAAUUCAA&UUGAAGAGAAAGCCUAUUUAU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN15326_c1_g1_483_TPlot.pdf
TRINITY_DN15326_c1_g1:484	si_a8	TRINITY_DN15326_c1_g1	473	493	484	-29.50	-21.10	0.715254237288136	6	1-6,493-488;9-19,485-475	7-8,487-486[SIL];20-21,474-473[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	GCAAUAGGCUUUCAAUUCAAU&AUUGAAGAGAAAGCCUAUUUA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN15326_c1_g1_484_TPlot.pdf
TRINITY_DN15326_c1_g1:485	si_a7	TRINITY_DN15326_c1_g1	474	494	485	-29.10	-22.00	0.756013745704467	5	1-7,494-488;10-20,485-475	8-9,487-486[SIL];21-21,474-474[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	CAAUAGGCUUUCAAUUCAAUU&AAUUGAAGAGAAAGCCUAUUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN15326_c1_g1_485_TPlot.pdf
TRINITY_DN15326_c1_g1:519	si_a7	TRINITY_DN15326_c1_g1	508	528	519	-29.10	-19.10	0.656357388316151	8	1-7,528-522;10-17,519-512	8-9,521-520[SIL];18-21,511-508[UP3]	....((((((((..(((((((&)))))))..))))))))....	UUCAAGGCUUUCAAUUCAAUU&AAUUGAAGAGAAAGCCUAUUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN15326_c1_g1_519_TPlot.pdf
TRINITY_DN15326_c1_g1:520	si_a6	TRINITY_DN15326_c1_g1	509	529	520	-29.10	-20.00	0.687285223367698	7	1-8,529-522;11-18,519-512	9-10,521-520[SIL];19-21,511-509[UP3]	...((((((((..((((((((&))))))))..))))))))...	UCAAGGCUUUCAAUUCAAUUU&AAAUUGAAGAGAAAGCCUAUU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN15326_c1_g1_520_TPlot.pdf
TRINITY_DN15326_c1_g1:522	si_a4	TRINITY_DN15326_c1_g1	511	531	522	-31.60	-22.40	0.708860759493671	6	1-10,531-522;13-20,519-512	11-12,521-520[SIL];21-21,511-511[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAGGCUUUCAAUUCAAUUUUA&UGAAAUUGAAGAGAAAGCCUA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN15326_c1_g1_522_TPlot.pdf
TRINITY_DN15326_c1_g1:559	si_a7	TRINITY_DN15326_c1_g1	548	568	559	-29.10	-19.40	0.666666666666667	8	1-7,568-562;10-17,559-552	8-9,561-560[SIL];18-21,551-548[UP3]	....((((((((..(((((((&)))))))..))))))))....	CGGAAGGCUUUCAAUUCAAUU&AAUUGAAGAGAAAGCCUAUUU	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN15326_c1_g1_559_TPlot.pdf
TRINITY_DN15326_c1_g1:560	si_a6	TRINITY_DN15326_c1_g1	549	569	560	-29.10	-19.70	0.676975945017182	8	2-8,568-562;11-18,559-552	1-1,569-569[UP5];9-10,561-560[SIL];19-21,551-549[UP3]	...((((((((..(((((((.&.)))))))..))))))))...	GGAAGGCUUUCAAUUCAAUUG&AAAUUGAAGAGAAAGCCUAUU	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN15326_c1_g1_560_TPlot.pdf
TRINITY_DN15326_c1_g1:622	si_s796	TRINITY_DN15326_c1_g1	612	631	622	-30.30	-19.80	0.653465346534653	7.5	1-8,631-624;11-12,621-620;14-20,619-613	9-10,623-622[SIL];13-13,x-x[BULq];21-21,612-612[UP3]	.(((((((-((..((((((((&))))))))..)).))))))).	UACGAGGA-AAUUUAUGAGCU&AGCUCGUAUUUUAUCUUCGUU	2	0.999964400554263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN15326_c1_g1_622_TPlot.pdf
TRINITY_DN15326_c1_g1:623	si_s795	TRINITY_DN15326_c1_g1	613	632	623	-30.30	-20.00	0.66006600660066	7.5	2-9,631-624;12-13,621-620;15-21,619-613	1-1,632-632[UP5];10-11,623-622[SIL];14-14,x-x[BULq]	(((((((-((..((((((((.&.))))))))..)).)))))))	ACGAGGA-AAUUUAUGAGCUA&AAGCUCGUAUUUUAUCUUCGU	2	0.999311501258161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN15326_c1_g1_623_TPlot.pdf
TRINITY_DN15326_c1_g1:644	si_s546	TRINITY_DN15326_c1_g1	631	653	644	-26.20	-17.08	0.651908396946565	9.5	1-10,653-644;13-21,639-631	11-12,643-640[AILt]	(((((((((....((((((((((&))))))))))--..)))))))))	UAUUGAUUCAAUCUUUUGAUUGG&CCGAUCAAAA--UAGAAUUAAUA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN15326_c1_g1_644_TPlot.pdf
TRINITY_DN1532_c0_g1:1857	si_s694	TRINITY_DN1532_c0_g1	1846	1866	1857	-23.90	-16.10	0.673640167364017	9	4-12,1863-1855;14-21,1853-1846	1-3,1866-1864[UP5];13-13,1854-1854[SIL]	((((((((.(((((((((...&...))))))))).))))))))	CUGGUAAACCGGCUGAUUUGU&UUUAAUUAGUCGAUUUAUUAG	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN1532_c0_g1_1857_TPlot.pdf
TRINITY_DN1532_c0_g1:313	si_s610	TRINITY_DN1532_c0_g1	302	322	313	-27.20	-17.80	0.654411764705882	8.5	1-5,322-318;7-10,316-313;13-20,310-303	6-6,317-317[SIL];11-12,312-311[SIL];21-21,302-302[UP3]	.((((((((..((((.(((((&))))).))))..)))))))).	AGCUUGGGUAGAAAACGGAUU&AAUCUUUUUUAAAUCCAAGCG	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN1532_c0_g1_313_TPlot.pdf
TRINITY_DN1532_c0_g1:401	si_a634	TRINITY_DN1532_c0_g1	390	410	401	-26.40	-17.56	0.665151515151515	12	1-9,410-402;14-19,397-392	10-13,401-398[SIL];20-21,391-390[UP3]	..((((((....(((((((((&)))))))))....))))))..	AGGCUCAGCUUCGUCGACGUA&UAUGUCGAUUUUUUUGAGUAA	3	0.999999997035464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1532_c0_g1_401_TPlot.pdf
TRINITY_DN1532_c0_g1:402	si_a633	TRINITY_DN1532_c0_g1	391	411	402	-26.40	-17.96	0.68030303030303	10.5	1-10,411-402;15-20,397-392	11-14,401-398[SIL];21-21,391-391[UP3]	.((((((....((((((((((&))))))))))....)))))).	GGCUCAGCUUCGUCGACGUAG&UUAUGUCGAUUUUUUUGAGUA	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1532_c0_g1_402_TPlot.pdf
TRINITY_DN1532_c0_g1:403	si_a632	TRINITY_DN1532_c0_g1	392	412	403	-26.10	-17.56	0.6727969348659	10	2-11,411-402;16-21,397-392	1-1,412-412[UP5];12-15,401-398[SIL]	((((((....((((((((((.&.))))))))))....))))))	GCUCAGCUUCGUCGACGUAGG&AUUAUGUCGAUUUUUUUGAGU	3	0.999999734700928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1532_c0_g1_403_TPlot.pdf
TRINITY_DN15330_c0_g1:49	si_a56	TRINITY_DN15330_c0_g1	39	59	49	-38.90	-27.20	0.699228791773779	7.5	1-6,59-54;9-14,50-45;16-21,44-39	7-8,53-51[AILt];15-15,x-x[BULq]	((((((-((((((...((((((&))))))-..)))))).))))))	UGGAAG-AGCGAGCAAGACUCC&GGAGUC-GACUCGCUUCUUUCA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN15330_c0_g1_49_TPlot.pdf
TRINITY_DN15330_c0_g1:50	si_a55	TRINITY_DN15330_c0_g1	40	60	50	-38.90	-25.90	0.665809768637532	8.5	2-7,59-54;10-15,50-45;17-21,44-40	1-1,60-60[UP5];8-9,53-51[AILt];16-16,x-x[BULq]	(((((-((((((...((((((.&.))))))-..)))))).)))))	GGAAG-AGCGAGCAAGACUCCA&AGGAGUC-GACUCGCUUCUUUC	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN15330_c0_g1_50_TPlot.pdf
TRINITY_DN15331_c0_g1:399	si_s164	TRINITY_DN15331_c0_g1	385	409	399	-40.20	-26.42	0.657213930348259	9.5	1-4,409-406;6-7,404-403;8-15,401-394;18-21,388-385	5-5,405-405[SIL];x-x,402-402[BULt];16-17,393-389[AILt]	((((.....((((((((.((.((((&)))).))-))))))))---..))))	CAUCAGUCGUGCCCCUGAGCGAUGA&UCAUGGC-CAGGGGUA---AAGAUG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN15331_c0_g1_399_TPlot.pdf
TRINITY_DN15332_c0_g1:1024	si_a318	TRINITY_DN15332_c0_g1	1013	1032	1024	-22.50	-14.90	0.662222222222222	7.5	1-8,1032-1025;11-20,1023-1014	9-10,1024-1024[AILq];21-21,1013-1013[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	UUAAAGAAAUUG-GGAUGAAU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999999938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN15332_c0_g1_1024_TPlot.pdf
TRINITY_DN15337_c0_g1:762	si_s91	TRINITY_DN15337_c0_g1	751	771	762	-34.70	-23.30	0.671469740634006	5	2-12,770-760;14-21,758-751	1-1,771-771[UP5];13-13,759-759[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UUUGAAGCUAAGAAGAGGGAC&UUUCUUCUUCUUCGCUUCGGA	4	0.999999999997439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN15337_c0_g1_762_TPlot.pdf
TRINITY_DN15343_c0_g1:146	si_s117	TRINITY_DN15343_c0_g1	135	155	146	-24.70	-19.40	0.785425101214575	10	5-19,151-137	1-4,155-152[UP5];20-21,136-135[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCCUCUUCUGUUUUUCUUUUA&AAAUAGAAAAAUAGAAGAGUU	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN15343_c0_g1_146_TPlot.pdf
TRINITY_DN15343_c0_g1:147	si_s116	TRINITY_DN15343_c0_g1	136	156	147	-24.70	-19.40	0.785425101214575	10.5	6-20,151-137	1-5,156-152[UP5];21-21,136-136[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CCUCUUCUGUUUUUCUUUUAC&AAAAUAGAAAAAUAGAAGAGU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN15343_c0_g1_147_TPlot.pdf
TRINITY_DN15343_c0_g1:148	si_s115	TRINITY_DN15343_c0_g1	137	157	148	-25.90	-19.10	0.737451737451738	11.5	7-21,151-137	1-6,157-152[UP5]	(((((((((((((((......&......)))))))))))))))	CUCUUCUGUUUUUCUUUUACA&GAAAAUAGAAAAAUAGAAGAG	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s115_TRINITY_DN15343_c0_g1_148_TPlot.pdf
TRINITY_DN1535_c0_g1:1454	si_s99	TRINITY_DN1535_c0_g1	1443	1464	1454	-34.60	-27.50	0.794797687861272	7	2-6,1463-1459;7-18,1457-1446	1-1,1464-1464[UP5];x-x,1458-1458[BULt];19-21,1445-1443[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	GUCUCCAAUCCGAAGUCGAGGU&UCUUCG-CUUCGGAUUGGAAAA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN1535_c0_g1_1454_TPlot.pdf
TRINITY_DN1535_c0_g1:2927	si_a327	TRINITY_DN1535_c0_g1	2916	2936	2927	-28.40	-18.70	0.658450704225352	8.5	1-4,2936-2933;6-10,2931-2927;12-20,2925-2917	5-5,2932-2932[SIL];11-11,2926-2926[SIL];21-21,2916-2916[UP3]	.(((((((((.(((((.((((&)))).))))).))))))))).	UGACGAGGAAAAGAGACGUCA&UGAUUUUUUUAUUCCUUGUCC	4	0.999999998721042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1535_c0_g1_2927_TPlot.pdf
TRINITY_DN1535_c0_g1:3473	si_a462	TRINITY_DN1535_c0_g1	3462	3482	3473	-21.20	-13.80	0.650943396226415	9	1-11,3482-3472;14-16,3469-3467	12-13,3471-3470[SIL];17-21,3466-3462[UP3]	.....(((..(((((((((((&)))))))))))..))).....	CUUCAACAGUUUAUAUGUAAC&GUUAUAUAUAAUAUGUAAUUA	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN1535_c0_g1_3473_TPlot.pdf
TRINITY_DN1535_c0_g1:3474	si_a461	TRINITY_DN1535_c0_g1	3463	3483	3474	-21.50	-14.00	0.651162790697674	8	2-12,3482-3472;15-17,3469-3467	1-1,3483-3483[UP5];13-14,3471-3470[SIL];18-21,3466-3463[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	UUCAACAGUUUAUAUGUAACU&UGUUAUAUAUAAUAUGUAAUU	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN1535_c0_g1_3474_TPlot.pdf
TRINITY_DN1535_c0_g1:3476	si_a459	TRINITY_DN1535_c0_g1	3465	3486	3476	-23.20	-15.60	0.672413793103448	7	1-3,3486-3484;4-14,3482-3472;17-19,3469-3467	x-x,3483-3483[BULt];15-16,3471-3470[SIL];20-21,3466-3465[UP3]	..(((..(((((((((((.(((&)))-)))))))))))..)))..	CAACAGUUUAUAUGUAACUAAC&GUU-GUUAUAUAUAAUAUGUAA	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN1535_c0_g1_3476_TPlot.pdf
TRINITY_DN1535_c0_g1:3477	si_a458	TRINITY_DN1535_c0_g1	3466	3487	3477	-23.80	-15.70	0.659663865546218	7	2-4,3486-3484;5-15,3482-3472;18-20,3469-3467	1-1,3487-3487[UP5];x-x,3483-3483[BULt];16-17,3471-3470[SIL];21-21,3466-3466[UP3]	.(((..(((((((((((.(((.&.)))-)))))))))))..))).	AACAGUUUAUAUGUAACUAACG&UGUU-GUUAUAUAUAAUAUGUA	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN1535_c0_g1_3477_TPlot.pdf
TRINITY_DN1535_c0_g1:3478	si_a457	TRINITY_DN1535_c0_g1	3467	3488	3478	-23.50	-16.70	0.71063829787234	6	1-5,3488-3484;6-16,3482-3472;19-21,3469-3467	x-x,3483-3483[BULt];17-18,3471-3470[SIL]	(((..(((((((((((.(((((&)))))-)))))))))))..)))	ACAGUUUAUAUGUAACUAACGA&UUGUU-GUUAUAUAUAAUAUGU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN1535_c0_g1_3478_TPlot.pdf
TRINITY_DN1535_c0_g1:3479	si_a456	TRINITY_DN1535_c0_g1	3468	3489	3479	-22.80	-16.70	0.732456140350877	6	1-6,3489-3484;7-17,3482-3472;20-21,3469-3468	x-x,3483-3483[BULt];18-19,3471-3470[SIL]	((..(((((((((((.((((((&))))))-)))))))))))..))	CAGUUUAUAUGUAACUAACGAU&AUUGUU-GUUAUAUAUAAUAUG	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN1535_c0_g1_3479_TPlot.pdf
TRINITY_DN1535_c0_g1:3480	si_a455	TRINITY_DN1535_c0_g1	3469	3490	3480	-21.10	-14.40	0.682464454976303	8	2-7,3489-3484;8-18,3482-3472	1-1,3490-3490[UP5];x-x,3483-3483[BULt];19-21,3471-3469[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	AGUUUAUAUGUAACUAACGAUA&AAUUGUU-GUUAUAUAUAAUAU	3	0.999993631342644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN1535_c0_g1_3480_TPlot.pdf
TRINITY_DN1535_c0_g1:3481	si_a454	TRINITY_DN1535_c0_g1	3470	3491	3481	-21.30	-14.40	0.676056338028169	8.5	3-8,3489-3484;9-19,3482-3472	1-2,3491-3490[UP5];x-x,3483-3483[BULt];20-21,3471-3470[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	GUUUAUAUGUAACUAACGAUAA&UAAUUGUU-GUUAUAUAUAAUA	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN1535_c0_g1_3481_TPlot.pdf
TRINITY_DN1535_c0_g1:62	si_s379	TRINITY_DN1535_c0_g1	46	71	62	-42.50	-29.70	0.698823529411765	14.5	1-10,71-62;11-16,56-51;18-20,49-47	x-x,61-57[BULt];17-17,50-50[SIL];21-21,46-46[UP3]	.(((.((((((.....((((((((((&))))))))))-----)))))).))).	CUGUCAGGCGGCGACAGCACGCGGGU&GCUCGCGUGU-----CCGCCUUACAU	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN1535_c0_g1_62_TPlot.pdf
TRINITY_DN1535_c0_g1:63	si_s378	TRINITY_DN1535_c0_g1	47	72	63	-43.80	-29.70	0.678082191780822	15	2-11,71-62;12-17,56-51;19-21,49-47	1-1,72-72[UP5];x-x,61-57[BULt];18-18,50-50[SIL]	(((.((((((.....((((((((((.&.))))))))))-----)))))).)))	UGUCAGGCGGCGACAGCACGCGGGUU&CGCUCGCGUGU-----CCGCCUUACA	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN1535_c0_g1_63_TPlot.pdf
TRINITY_DN1536_c0_g1:1727	si_a351	TRINITY_DN1536_c0_g1	1716	1736	1727	-20.50	-13.60	0.663414634146341	13	6-9,1731-1728;11-21,1726-1716	1-5,1736-1732[UP5];10-10,1727-1727[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	GUCAAAAUGGAUUUGAAGACU&AAAUAUUAAUUCUAUUUUGAU	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN1536_c0_g1_1727_TPlot.pdf
TRINITY_DN1536_c0_g1:1927	si_s895	TRINITY_DN1536_c0_g1	1915	1936	1927	-31.10	-21.20	0.681672025723473	10	5-10,1932-1927;11-21,1925-1915	1-4,1936-1933[UP5];x-x,1926-1926[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GGAAUUGGAGACGAAAGCAGAA&AUAGGCUUUC-UCUUCAAUUUC	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN1536_c0_g1_1927_TPlot.pdf
TRINITY_DN15370_c1_g1:513	si_a509	TRINITY_DN15370_c1_g1	501	522	513	-37.30	-25.50	0.683646112600536	8	1-10,522-513;12-12,511-511;13-21,509-501	11-11,512-512[SIL];x-x,510-510[BULt]	(((((((((.(.((((((((((&)))))))))).)-)))))))))	GCUUUACGUGUGUAGGGGAGAC&GUCUUCCUUGGA-AUGUAAGGC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN15370_c1_g1_513_TPlot.pdf
TRINITY_DN15373_c0_g1:994	si_a324	TRINITY_DN15373_c0_g1	979	1003	994	-27.50	-18.00	0.654545454545455	10.5	1-13,1003-991;14-19,986-981	x-x,990-987[BULt];20-21,980-979[UP3]	..((((((....(((((((((((((&)))))))))))))----))))))..	UUGGGAAUUCACAGAAGAGUUAUGG&CCAUGAUUUUUUU----AUUCCUUG	4	0.999999411941571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN15373_c0_g1_994_TPlot.pdf
TRINITY_DN15379_c0_g2:2023	si_a625	TRINITY_DN15379_c0_g2	2011	2032	2023	-30.60	-23.40	0.764705882352941	8	3-10,2030-2023;12-21,2020-2011	1-2,2032-2031[UP5];11-11,2022-2021[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	AAGGUCGACAAAAAUACGCCAA&UAGGCGUAUU-AUGUCGAUUUU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN15379_c0_g2_2023_TPlot.pdf
TRINITY_DN1537_c0_g3:1754	si_a144	TRINITY_DN1537_c0_g3	1743	1763	1754	-27.40	-18.70	0.682481751824818	12	7-21,1757-1743	1-6,1763-1758[UP5]	(((((((((((((((......&......)))))))))))))))	CUUUGAAACAACAACUGCUAC&UUAAUCGUUGUUGUUUUAAGG	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN1537_c0_g3_1754_TPlot.pdf
TRINITY_DN1537_c0_g3:1867	si_s68	TRINITY_DN1537_c0_g3	1855	1879	1867	-23.10	-15.40	0.666666666666667	11.5	1-7,1879-1873;8-12,1869-1865;13-21,1863-1855	x-x,1872-1870[BULt];x-x,1864-1864[BULt]	(((((((((.(((((...(((((((&)))))))---)))))-)))))))))	GAGGAGAAACAGAUGCGUGAAGUUG&CAACUUC---UAUUU-UUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1537_c0_g3_1867_TPlot.pdf
TRINITY_DN1537_c0_g3:770	si_a409	TRINITY_DN1537_c0_g3	759	779	770	-19.50	-14.50	0.743589743589744	8	1-16,779-764	17-21,763-759[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACGCCUAAAUGUAAAUAAGAC&GUUUUGUUUAUAUUUAAAUAA	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN1537_c0_g3_770_TPlot.pdf
TRINITY_DN1537_c0_g3:771	si_a408	TRINITY_DN1537_c0_g3	760	780	771	-20.10	-14.70	0.731343283582089	8	2-17,779-764	1-1,780-780[UP5];18-21,763-760[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGCCUAAAUGUAAAUAAGACU&UGUUUUGUUUAUAUUUAAAUA	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN1537_c0_g3_771_TPlot.pdf
TRINITY_DN1537_c0_g3:772	si_a407	TRINITY_DN1537_c0_g3	761	781	772	-19.80	-14.70	0.742424242424242	8.5	3-18,779-764	1-2,781-780[UP5];19-21,763-761[UP3]	...((((((((((((((((..&..))))))))))))))))...	GCCUAAAUGUAAAUAAGACUA&UUGUUUUGUUUAUAUUUAAAU	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1537_c0_g3_772_TPlot.pdf
TRINITY_DN1537_c0_g3:773	si_a406	TRINITY_DN1537_c0_g3	762	782	773	-19.80	-14.70	0.742424242424242	9.5	4-19,779-764	1-3,782-780[UP5];20-21,763-762[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCUAAAUGUAAAUAAGACUAC&AUUGUUUUGUUUAUAUUUAAA	2	0.998491877366458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1537_c0_g3_773_TPlot.pdf
TRINITY_DN1537_c0_g3:774	si_a405	TRINITY_DN1537_c0_g3	763	783	774	-19.80	-14.70	0.742424242424242	10.5	5-20,779-764	1-4,783-780[UP5];21-21,763-763[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUAAAUGUAAAUAAGACUACA&AAUUGUUUUGUUUAUAUUUAA	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1537_c0_g3_774_TPlot.pdf
TRINITY_DN1537_c3_g1:79	si_a801	TRINITY_DN1537_c3_g1	68	88	79	-34.60	-23.00	0.664739884393064	9	4-7,85-82;9-18,80-71;20-21,69-68	1-3,88-86[UP5];8-8,81-81[SIL];19-19,70-70[SIL]	((.((((((((((.((((...&...)))).)))))))))).))	UCAUCGCUUUGGAAUGGAUUU&UUUUCCAAUCCGAAGCGAAGA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN1537_c3_g1_79_TPlot.pdf
TRINITY_DN1537_c3_g1:80	si_a800	TRINITY_DN1537_c3_g1	69	89	80	-33.70	-22.00	0.652818991097923	11.5	5-8,85-82;10-19,80-71	1-4,89-86[UP5];9-9,81-81[SIL];20-21,70-69[UP3]	..((((((((((.((((....&....)))).))))))))))..	CAUCGCUUUGGAAUGGAUUUG&AUUUUCCAAUCCGAAGCGAAG	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN1537_c3_g1_80_TPlot.pdf
TRINITY_DN15380_c0_g1:230	si_s79	TRINITY_DN15380_c0_g1	220	239	230	-26.20	-18.20	0.694656488549618	6.5	2-11,238-229;13-19,228-222	1-1,239-239[UP5];12-12,x-x[BULq];20-21,221-220[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	ACGAAGAGA-GAAAGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15380_c0_g1_230_TPlot.pdf
TRINITY_DN15385_c0_g1:258	si_a451	TRINITY_DN15385_c0_g1	247	267	258	-23.60	-15.60	0.661016949152542	9	1-13,267-255	14-21,254-247[UP3]	........(((((((((((((&)))))))))))))........	CCUAAUUCACAACAAUUGUCU&AGAUAAUUGUUGUUAUAUAUA	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN15385_c0_g1_258_TPlot.pdf
TRINITY_DN15385_c0_g1:991	si_a787	TRINITY_DN15385_c0_g1	980	998	991	-26.30	-21.70	0.82509505703422	6.5	1-8,998-991;11-21,990-980	9-10,x-x[BULq]	(((((((((((--((((((((&))))))))..)))))))))))	UGGAAAAUGGA--GAUGGAAG&CUUCUAUUUUUCUAUUUUCCA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN15385_c0_g1_991_TPlot.pdf
TRINITY_DN15385_c0_g1:996	si_s608	TRINITY_DN15385_c0_g1	985	1005	996	-26.70	-17.70	0.662921348314607	9	2-13,1004-993;16-19,990-987	1-1,1005-1005[UP5];14-15,992-991[SIL];20-21,986-985[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	AAUGGAGAUGGAAGGGAUUCA&CGAAUCUUUUUUAAAUCCAAG	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN15385_c0_g1_996_TPlot.pdf
TRINITY_DN15388_c0_g1:2490	si_s91	TRINITY_DN15388_c0_g1	2479	2501	2490	-34.70	-23.00	0.662824207492795	8.5	2-9,2500-2493;10-16,2490-2484;18-21,2482-2479	1-1,2501-2501[UP5];x-x,2492-2491[BULt];17-17,2483-2483[SIL]	((((.(((((((..((((((((.&.))))))))--))))))).))))	UCCGUAGUGAAGCAGAGAAGGAU&UUUCUUCUU--CUUCGCUUCGGA	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN15388_c0_g1_2490_TPlot.pdf
TRINITY_DN15388_c0_g1:2620	si_s809	TRINITY_DN15388_c0_g1	2609	2630	2620	-28.50	-20.40	0.715789473684211	8.5	1-8,2630-2623;10-18,2620-2612	9-9,2622-2621[AILt];19-21,2611-2609[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	UUAAGGAAAAGGAAGACGAAGA&UCUUCGUU-ACCUUUUCUUAAU	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN15388_c0_g1_2620_TPlot.pdf
TRINITY_DN15388_c0_g1:2624	si_s806	TRINITY_DN15388_c0_g1	2612	2633	2624	-28.60	-23.40	0.818181818181818	5.5	1-11,2633-2623;13-21,2620-2612	12-12,2622-2621[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AGGAAAAGGAAGACGAAGAUAA&UUAUCUUCGUU-ACCUUUUCUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN15388_c0_g1_2624_TPlot.pdf
TRINITY_DN15388_c0_g1:2938	si_a564	TRINITY_DN15388_c0_g1	2924	2946	2938	-37.60	-25.00	0.664893617021277	7	1-3,2946-2944;5-15,2943-2933;16-20,2929-2925	4-4,x-x[BULq];x-x,2932-2930[BULt];21-21,2924-2924[UP3]	.(((((...(((((((((((-(((&))).)))))))))))---))))).	CCAUACUCAGAUUCAUGGGG-GAU&AUCUCCCCGUGAAUC---GUAUGU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN15388_c0_g1_2938_TPlot.pdf
TRINITY_DN15388_c0_g1:2939	si_a563	TRINITY_DN15388_c0_g1	2925	2947	2939	-37.20	-24.70	0.663978494623656	7	2-4,2946-2944;6-16,2943-2933;17-21,2929-2925	1-1,2947-2947[UP5];5-5,x-x[BULq];x-x,2932-2930[BULt]	(((((...(((((((((((-(((.&.))).)))))))))))---)))))	CAUACUCAGAUUCAUGGGG-GAUU&UAUCUCCCCGUGAAUC---GUAUG	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a563_TRINITY_DN15388_c0_g1_2939_TPlot.pdf
TRINITY_DN15388_c0_g1:3165	si_s808	TRINITY_DN15388_c0_g1	3154	3177	3165	-28.60	-20.62	0.720979020979021	12	1-7,3177-3171;10-20,3165-3155	8-9,3170-3166[AILt];21-21,3154-3154[UP3]	.(((((((((((.....(((((((&)))))))---..))))))))))).	GUAAGGAAGGGUUUGGUCGAAGAU&AUCUUCG---UUACCUUUUCUUAA	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN15388_c0_g1_3165_TPlot.pdf
TRINITY_DN15388_c0_g1:3909	si_a324	TRINITY_DN15388_c0_g1	3898	3914	3909	-27.50	-17.90	0.650909090909091	9.5	1-5,3914-3910;10-21,3909-3898	6-9,x-x[BULq]	((((((((((((----(((((&)))))....))))))))))))	CGGGGAGUAAAA----CAUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN15388_c0_g1_3909_TPlot.pdf
TRINITY_DN15388_c0_g1:4879	si_s70	TRINITY_DN15388_c0_g1	4862	4888	4879	-25.80	-18.00	0.697674418604651	12	1-8,4888-4881;11-18,4878-4871;19-21,4864-4862	9-10,4880-4879[SIL];x-x,4870-4865[BULt]	(((......((((((((..((((((((&))))))))..))))))))------)))	GGACGUCUAGAGAAGAAUUAUGGAAGU&ACUUCUAUUUUUUUUCUU------UCC	3	0.99999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN15388_c0_g1_4879_TPlot.pdf
TRINITY_DN1538_c0_g1:151	si_a789	TRINITY_DN1538_c0_g1	140	157	151	-24.80	-16.42	0.662096774193548	11.5	1-3,157-155;9-21,152-140	4-8,154-153[AILq]	(((((((((((((..---(((&))).....)))))))))))))	GUUGGAAAAUGGAUG---AGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999997802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1538_c0_g1_151_TPlot.pdf
TRINITY_DN1538_c0_g1:2036	si_s816	TRINITY_DN1538_c0_g1	2021	2046	2036	-24.90	-16.60	0.666666666666667	10	1-5,2046-2042;6-11,2040-2035;12-21,2030-2021	x-x,2041-2041[BULt];x-x,2034-2031[BULt]	((((((((((....((((((.(((((&)))))-))))))----))))))))))	UUUCAUUAUUUUGAAAGAAAUAGGUA&UACCU-UUUCUU----AAUAAUGAAA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN1538_c0_g1_2036_TPlot.pdf
TRINITY_DN1538_c0_g1:384	si_s83	TRINITY_DN1538_c0_g1	374	393	384	-30.90	-21.20	0.686084142394822	3.5	1-14,393-380;16-20,379-375	15-15,x-x[BULq];21-21,374-374[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	AAAGGA-AAGAAGGGAAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1538_c0_g1_384_TPlot.pdf
TRINITY_DN1538_c0_g1:387	si_s80	TRINITY_DN1538_c0_g1	375	396	387	-28.20	-22.30	0.790780141843972	3.5	1-17,396-380;18-20,378-376	x-x,379-379[BULt];21-21,375-375[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	AAGGAAAGAAGGGAAAGAAAAA&UUUUUCUUUCCUUUCUU-CUUC	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1538_c0_g1_387_TPlot.pdf
TRINITY_DN1538_c0_g1:388	si_s79	TRINITY_DN1538_c0_g1	376	397	388	-26.20	-23.20	0.885496183206107	2	1-18,397-380;19-21,378-376	x-x,379-379[BULt]	(((.((((((((((((((((((&))))))))))))))))))-)))	AGGAAAGAAGGGAAAGAAAAAA&UUUUUUCUUUCCUUUCUU-CUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1538_c0_g1_388_TPlot.pdf
TRINITY_DN1538_c0_g1:389	si_s78	TRINITY_DN1538_c0_g1	377	398	389	-26.20	-22.60	0.862595419847328	3	2-19,397-380;20-21,378-377	1-1,398-398[UP5];x-x,379-379[BULt]	((.((((((((((((((((((.&.))))))))))))))))))-))	GGAAAGAAGGGAAAGAAAAAAG&UUUUUUUCUUUCCUUUCUU-CU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1538_c0_g1_389_TPlot.pdf
TRINITY_DN1538_c0_g1:390	si_s77	TRINITY_DN1538_c0_g1	379	399	390	-25.50	-23.60	0.925490196078431	2.5	1-20,399-380	21-21,379-379[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AAAGAAGGGAAAGAAAAAAGA&UUUUUUUUCUUUCCUUUCUUC	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1538_c0_g1_390_TPlot.pdf
TRINITY_DN1538_c0_g1:391	si_s76	TRINITY_DN1538_c0_g1	380	400	391	-23.60	-23.60	1	2.5	2-21,399-380	1-1,400-400[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AAGAAGGGAAAGAAAAAAGAC&AUUUUUUUUCUUUCCUUUCUU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1538_c0_g1_391_TPlot.pdf
TRINITY_DN1538_c0_g1:392	si_s75	TRINITY_DN1538_c0_g1	381	401	392	-24.00	-22.70	0.945833333333333	4.5	3-21,399-381	1-2,401-400[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAAGGGAAAGAAAAAAGACA&UAUUUUUUUUCUUUCCUUUCU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1538_c0_g1_392_TPlot.pdf
TRINITY_DN1538_c0_g1:393	si_s74	TRINITY_DN1538_c0_g1	382	402	393	-25.00	-21.40	0.856	6.5	4-21,399-382	1-3,402-400[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGGGAAAGAAAAAAGACAA&CUAUUUUUUUUCUUUCCUUUC	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1538_c0_g1_393_TPlot.pdf
TRINITY_DN1538_c0_g1:394	si_s73	TRINITY_DN1538_c0_g1	383	405	394	-24.00	-18.30	0.7625	8.5	1-3,405-403;5-21,399-383	4-4,402-400[AILt]	(((((((((((((((((...(((&)))--.)))))))))))))))))	AAGGGAAAGAAAAAAGACAAGGA&UCU--AUUUUUUUUCUUUCCUUU	3	0.999999340269439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1538_c0_g1_394_TPlot.pdf
TRINITY_DN1538_c0_g1:395	si_s72	TRINITY_DN1538_c0_g1	384	405	395	-24.10	-18.70	0.775933609958506	6.5	1-4,405-402;6-21,399-384	5-5,401-400[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	AGGGAAAGAAAAAAGACAAGGA&UUCU-AUUUUUUUUCUUUCCUU	3	0.999991544621683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1538_c0_g1_395_TPlot.pdf
TRINITY_DN1538_c0_g1:396	si_s71	TRINITY_DN1538_c0_g1	385	406	396	-25.70	-18.10	0.704280155642023	7.5	2-5,405-402;7-21,399-385	1-1,406-406[UP5];6-6,401-400[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	GGGAAAGAAAAAAGACAAGGAA&CUUCU-AUUUUUUUUCUUUCCU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1538_c0_g1_396_TPlot.pdf
TRINITY_DN1538_c0_g1:4279	si_s634	TRINITY_DN1538_c0_g1	4266	4288	4279	-38.30	-24.90	0.650130548302872	12	4-10,4285-4279;11-11,4277-4277;12-21,4275-4266	1-3,4288-4286[UP5];x-x,4278-4278[BULt];x-x,4276-4276[BULt]	((((((((((.(.(((((((...&...)))))))-)-))))))))))	GAGGGUGGGCUGCCCUACGGCAC&UUUUCGUAGG-C-GUUUGCCCUC	3	0.999996599817936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN1538_c0_g1_4279_TPlot.pdf
TRINITY_DN1538_c0_g1:517	si_s79	TRINITY_DN1538_c0_g1	503	526	517	-26.20	-18.90	0.721374045801527	6	1-11,526-516;12-13,514-513;14-21,510-503	x-x,515-515[BULt];x-x,512-511[BULt]	((((((((..((.(((((((((((&)))))))))))-))--))))))))	GAGAAGGAAAAGCGAAAGAAGAAA&UUUUUUCUUUC-CU--UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1538_c0_g1_517_TPlot.pdf
TRINITY_DN1538_c0_g1:519	si_s77	TRINITY_DN1538_c0_g1	505	528	519	-25.50	-17.40	0.68235294117647	5.5	2-13,527-516;14-15,514-513;16-21,510-505	1-1,528-528[UP5];x-x,515-515[BULt];x-x,512-511[BULt]	((((((..((.((((((((((((.&.))))))))))))-))--))))))	GAAGGAAAAGCGAAAGAAGAAAAU&UUUUUUUUCUUUC-CU--UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1538_c0_g1_519_TPlot.pdf
TRINITY_DN1538_c0_g1:520	si_s76	TRINITY_DN1538_c0_g1	503	529	520	-23.60	-15.40	0.652542372881356	11	3-14,527-516;15-21,509-503	1-2,529-528[UP5];x-x,515-510[BULt]	(((((((......((((((((((((..&..))))))))))))------)))))))	GAGAAGGAAAAGCGAAAGAAGAAAAUC&AUUUUUUUUCUUUC------CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1538_c0_g1_520_TPlot.pdf
TRINITY_DN1538_c0_g1:567	si_s207	TRINITY_DN1538_c0_g1	556	578	567	-33.00	-22.40	0.678787878787879	8	1-5,578-574;6-8,572-570;9-13,568-564;15-20,562-557	x-x,573-573[BULt];x-x,569-569[BULt];14-14,563-563[SIL];21-21,556-556[UP3]	.((((((.(((((.(((.(((((&)))))-)))-))))).)))))).	GUUCGAAGACAGCUUGGAUGCAU&AUGUA-CCA-GUUGUGUUCGAAA	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN1538_c0_g1_567_TPlot.pdf
TRINITY_DN1538_c0_g1:724	si_a870	TRINITY_DN1538_c0_g1	713	733	724	-24.80	-16.40	0.661290322580645	10.5	1-9,733-725;11-18,723-716	10-10,724-724[SIL];19-21,715-713[UP3]	...((((((((.(((((((((&))))))))).))))))))...	GCCGCAGCUGGUUUUUUGGUA&UAUUAAAGAUUUAGUUGCAAU	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN1538_c0_g1_724_TPlot.pdf
TRINITY_DN1538_c0_g1:725	si_a869	TRINITY_DN1538_c0_g1	714	734	725	-24.80	-16.60	0.669354838709677	10	2-10,733-725;12-19,723-716	1-1,734-734[UP5];11-11,724-724[SIL];20-21,715-714[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	CCGCAGCUGGUUUUUUGGUAU&UUAUUAAAGAUUUAGUUGCAA	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN1538_c0_g1_725_TPlot.pdf
TRINITY_DN1538_c0_g1:726	si_a868	TRINITY_DN1538_c0_g1	715	735	726	-24.80	-16.60	0.669354838709677	10.5	3-11,733-725;13-20,723-716	1-2,735-734[UP5];12-12,724-724[SIL];21-21,715-715[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	CGCAGCUGGUUUUUUGGUAUC&AUUAUUAAAGAUUUAGUUGCA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN1538_c0_g1_726_TPlot.pdf
TRINITY_DN1538_c0_g1:727	si_a867	TRINITY_DN1538_c0_g1	716	736	727	-24.10	-16.20	0.672199170124481	10.5	4-12,733-725;14-21,723-716	1-3,736-734[UP5];13-13,724-724[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GCAGCUGGUUUUUUGGUAUCA&AAUUAUUAAAGAUUUAGUUGC	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN1538_c0_g1_727_TPlot.pdf
TRINITY_DN1538_c0_g1:76	si_s73	TRINITY_DN1538_c0_g1	65	84	76	-24.00	-15.90	0.6625	4.5	1-3,84-82;5-15,81-71;17-21,69-65	4-4,x-x[BULq];16-16,70-70[SIL]	(((((.(((((((((((-(((&))).))))))))))).)))))	AGAGGCAAGAAAAGAAA-AGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1538_c0_g1_76_TPlot.pdf
TRINITY_DN1538_c0_g1:762	si_s728	TRINITY_DN1538_c0_g1	751	770	762	-31.90	-21.20	0.664576802507837	5.5	1-7,770-764;9-19,763-753	8-8,x-x[BULq];20-21,752-751[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	CGUCAUCCGUCUA-AUAGUAU&AUAUUAUCUAGACGGGUGAAU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN1538_c0_g1_762_TPlot.pdf
TRINITY_DN1538_c0_g1:763	si_s727	TRINITY_DN1538_c0_g1	752	771	763	-33.80	-22.50	0.665680473372781	5	1-8,771-764;10-20,763-753	9-9,x-x[BULq];21-21,752-752[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	GUCAUCCGUCUA-AUAGUAUU&GAUAUUAUCUAGACGGGUGAA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s727_TRINITY_DN1538_c0_g1_763_TPlot.pdf
TRINITY_DN1538_c0_g1:764	si_s726	TRINITY_DN1538_c0_g1	753	772	764	-34.40	-22.50	0.654069767441861	5.5	2-9,771-764;11-21,763-753	1-1,772-772[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	UCAUCCGUCUA-AUAGUAUUC&AGAUAUUAUCUAGACGGGUGA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s726_TRINITY_DN1538_c0_g1_764_TPlot.pdf
TRINITY_DN1538_c0_g1:77	si_s72	TRINITY_DN1538_c0_g1	66	85	77	-24.10	-16.00	0.663900414937759	4.5	1-4,85-82;6-16,81-71;18-21,69-66	5-5,x-x[BULq];17-17,70-70[SIL]	((((.(((((((((((-((((&)))).))))))))))).))))	GAGGCAAGAAAAGAAA-AGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1538_c0_g1_77_TPlot.pdf
TRINITY_DN1538_c0_g1:78	si_s71	TRINITY_DN1538_c0_g1	67	86	78	-25.70	-17.80	0.692607003891051	4	1-5,86-82;7-17,81-71;19-21,69-67	6-6,x-x[BULq];18-18,70-70[SIL]	(((.(((((((((((-(((((&))))).))))))))))).)))	AGGCAAGAAAAGAAA-AGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999996816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1538_c0_g1_78_TPlot.pdf
TRINITY_DN1538_c0_g1:836	si_s513	TRINITY_DN1538_c0_g1	820	845	836	-24.90	-16.80	0.674698795180723	11.5	1-13,845-833;14-19,827-822	x-x,832-828[BULt];20-21,821-820[UP3]	..((((((.....(((((((((((((&)))))))))))))-----))))))..	ACCGAAUUUGACAGAGGAUGUGGGAU&AUUCUAUAUUCUU-----AAUUCGAA	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN1538_c0_g1_836_TPlot.pdf
TRINITY_DN1538_c0_g1:837	si_s512	TRINITY_DN1538_c0_g1	821	846	837	-24.80	-17.70	0.713709677419355	10.5	1-14,846-833;15-20,827-822	x-x,832-828[BULt];21-21,821-821[UP3]	.((((((.....((((((((((((((&))))))))))))))-----)))))).	CCGAAUUUGACAGAGGAUGUGGGAUU&AAUUCUAUAUUCUU-----AAUUCGA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN1538_c0_g1_837_TPlot.pdf
TRINITY_DN1538_c0_g1:838	si_s511	TRINITY_DN1538_c0_g1	822	847	838	-25.50	-17.00	0.666666666666667	10.5	2-15,846-833;16-21,827-822	1-1,847-847[UP5];x-x,832-828[BULt]	((((((.....((((((((((((((.&.))))))))))))))-----))))))	CGAAUUUGACAGAGGAUGUGGGAUUC&CAAUUCUAUAUUCUU-----AAUUCG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN1538_c0_g1_838_TPlot.pdf
TRINITY_DN1538_c0_g1:843	si_s506	TRINITY_DN1538_c0_g1	832	861	843	-24.30	-16.30	0.670781893004115	22.5	1-6,861-856;7-20,846-833	x-x,855-847[BULt];21-21,832-832[UP3]	.((((((((((((((.........((((((&))))))---------)))))))))))))).	AGAGGAUGUGGGAUUCUUUGCGUCGUUUUG&CAAAAC---------AAUUCUAUAUUCUUA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN1538_c0_g1_843_TPlot.pdf
TRINITY_DN15390_c2_g1:926	si_s68	TRINITY_DN15390_c2_g1	915	935	926	-23.10	-16.60	0.718614718614719	11.5	4-19,932-917	1-3,935-933[UP5];20-21,916-915[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGGAAAAAGGGUGGAAGAUU&CAACUUCUAUUUUUUUUCUUU	2	0.999975186403413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN15390_c2_g1_926_TPlot.pdf
TRINITY_DN15391_c0_g1:1165	si_s91	TRINITY_DN15391_c0_g1	1153	1174	1165	-34.70	-23.40	0.674351585014409	5.5	2-14,1173-1161;15-15,1159-1159;17-20,1157-1154	1-1,1174-1174[UP5];x-x,1160-1160[BULt];16-16,1158-1158[SIL];21-21,1153-1153[UP3]	.((((.(.(((((((((((((.&.)))))))))))))-).)))).	ACUGAUGCCGAAGAAGGAGAAU&UUUCUUCUUCUUCG-CUUCGGA	3	0.999999999989966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN15391_c0_g1_1165_TPlot.pdf
TRINITY_DN15391_c0_g1:1636	si_a651	TRINITY_DN15391_c0_g1	1622	1645	1636	-33.30	-21.74	0.652852852852853	9.5	1-7,1645-1639;9-13,1637-1633;15-20,1628-1623	8-8,1638-1638[SIL];14-14,1632-1629[AILt];21-21,1622-1622[UP3]	.((((((....(((((.(((((((&))))))).)))))---.)))))).	CGGCGUUAACACCCGACGUAUUGC&GUAAUAUAUCGGG---AAAUGCCU	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a651_TRINITY_DN15391_c0_g1_1636_TPlot.pdf
TRINITY_DN15391_c0_g1:183	si_a878	TRINITY_DN15391_c0_g1	172	192	183	-26.70	-18.30	0.685393258426966	9	3-17,190-176	1-2,192-191[UP5];18-21,175-172[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAAAAUUGAUUGUAACUGAUA&AUUUAGUUGCAAUCAAUAUAG	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN15391_c0_g1_183_TPlot.pdf
TRINITY_DN15391_c0_g1:869	si_s88	TRINITY_DN15391_c0_g1	857	878	869	-34.80	-23.70	0.681034482758621	6	1-12,878-867;13-17,865-861	x-x,866-866[BULt];18-21,860-857[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	AUUCCGAAGAAAGAAGAAAGGA&UCCUUUCUUCUU-CUUCGCUUC	3	0.999999999989966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN15391_c0_g1_869_TPlot.pdf
TRINITY_DN15391_c0_g1:870	si_s87	TRINITY_DN15391_c0_g1	858	879	870	-32.90	-24.60	0.747720364741641	4	1-13,879-867;14-18,865-861	x-x,866-866[BULt];19-21,860-858[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	UUCCGAAGAAAGAAGAAAGGAA&UUCCUUUCUUCUU-CUUCGCUU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN15391_c0_g1_870_TPlot.pdf
TRINITY_DN15391_c0_g1:873	si_s84	TRINITY_DN15391_c0_g1	861	882	873	-32.30	-25.20	0.780185758513932	5	3-16,880-867;17-21,865-861	1-2,882-881[UP5];x-x,866-866[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	CGAAGAAAGAAGAAAGGAAGUC&UCUUUCCUUUCUUCUU-CUUCG	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN15391_c0_g1_873_TPlot.pdf
TRINITY_DN15391_c0_g1:878	si_s79	TRINITY_DN15391_c0_g1	867	887	878	-26.20	-18.30	0.698473282442748	14	8-21,880-867	1-7,887-881[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAGAAAGGAAGUCCAACA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15391_c0_g1_878_TPlot.pdf
TRINITY_DN15391_c0_g1:888	si_s40	TRINITY_DN15391_c0_g1	877	897	888	-24.30	-16.80	0.691358024691358	10.5	4-10,894-888;13-21,885-877	1-3,897-895[UP5];11-12,887-886[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GAAGUCCAACAAUUAAGGGAA&AAUCUUUAAUAAUUGGAUUUC	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN15391_c0_g1_888_TPlot.pdf
TRINITY_DN15392_c0_g1:1255	si_a635	TRINITY_DN15392_c0_g1	1244	1266	1255	-26.10	-17.80	0.681992337164751	13	3-8,1264-1259;9-18,1256-1247	1-2,1266-1265[UP5];x-x,1258-1257[BULt];19-21,1246-1244[UP3]	...((((((((((..((((((..&..))))))--))))))))))...	CGCGCUCGAAGAAGUGUCGACUU&AUGUCGAU--UUUUUUGAGUAAU	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN15392_c0_g1_1255_TPlot.pdf
TRINITY_DN15392_c0_g1:5784	si_a636	TRINITY_DN15392_c0_g1	5773	5793	5784	-26.30	-17.80	0.67680608365019	7.5	1-6,5793-5788;8-17,5786-5777	7-7,5787-5787[SIL];18-21,5776-5773[UP3]	....((((((((((.((((((&)))))).))))))))))....	CCAAGCUCAAAAAACUUGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN15392_c0_g1_5784_TPlot.pdf
TRINITY_DN15392_c0_g1:6647	si_s630	TRINITY_DN15392_c0_g1	6636	6655	6647	-35.60	-25.10	0.705056179775281	12	1-4,6655-6652;10-21,6647-6636	5-9,6651-6648[AILq]	((((((((((((....-((((&)))).....))))))))))))	GCGAGCGCCUGCUCCC-GAUC&GAUCUUUUCGUAGGCGUUUGC	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN15392_c0_g1_6647_TPlot.pdf
TRINITY_DN15392_c0_g1:7352	si_s520	TRINITY_DN15392_c0_g1	7341	7361	7352	-24.00	-17.70	0.7375	8	3-15,7359-7347;17-20,7345-7342	1-2,7361-7360[UP5];16-16,7346-7346[SIL];21-21,7341-7341[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	CAAUGUUUUCGAGUUGGGAGA&AUUCUUAAUUCGAAAUCAUUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN15392_c0_g1_7352_TPlot.pdf
TRINITY_DN15392_c0_g1:7354	si_s518	TRINITY_DN15392_c0_g1	7343	7363	7354	-24.60	-16.90	0.686991869918699	11	5-17,7359-7347;19-21,7345-7343	1-4,7363-7360[UP5];18-18,7346-7346[SIL]	(((.(((((((((((((....&....))))))))))))).)))	AUGUUUUCGAGUUGGGAGACU&AUAUUCUUAAUUCGAAAUCAU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN15392_c0_g1_7354_TPlot.pdf
TRINITY_DN15392_c0_g1:7405	si_s698	TRINITY_DN15392_c0_g1	7394	7414	7405	-27.00	-18.20	0.674074074074074	9	4-12,7411-7403;15-20,7400-7395	1-3,7414-7412[UP5];13-14,7402-7401[SIL];21-21,7394-7394[UP3]	.((((((..(((((((((...&...)))))))))..)))))).	AUCACUACCAGAUCGACUUGC&AUUAGUCGAUUUAUUAGUGAA	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN15392_c0_g1_7405_TPlot.pdf
TRINITY_DN15392_c0_g1:7973	si_s806	TRINITY_DN15392_c0_g1	7961	7982	7973	-28.60	-19.10	0.667832167832168	6.5	1-11,7982-7972;13-15,7969-7967;17-21,7965-7961	12-12,7971-7970[AILt];16-16,7966-7966[SIL]	(((((.(((..(((((((((((&)))))))))))-.))).)))))	GAGAACAGGAGAAUGAAGAUAA&UUAUCUUCGUU-ACCUUUUCUU	3	0.999999999957764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN15392_c0_g1_7973_TPlot.pdf
TRINITY_DN15394_c0_g1:1240	si_a704	TRINITY_DN15394_c0_g1	1229	1250	1240	-29.30	-19.10	0.651877133105802	10.5	3-6,1248-1245;8-19,1242-1231	1-2,1250-1249[UP5];7-7,1244-1243[AILt];20-21,1230-1229[UP3]	..((((((((((((..((((..&..))))-.))))))))))))..	GAUGUUUUGGAGUGGAACCACG&ACUGGU-ACAUUCCAAAAUAAU	2	0.979157316154238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN15394_c0_g1_1240_TPlot.pdf
TRINITY_DN15394_c0_g1:1241	si_a703	TRINITY_DN15394_c0_g1	1230	1251	1241	-29.20	-19.10	0.654109589041096	11.5	4-7,1248-1245;9-20,1242-1231	1-3,1251-1249[UP5];8-8,1244-1243[AILt];21-21,1230-1230[UP3]	.((((((((((((..((((...&...))))-.)))))))))))).	AUGUUUUGGAGUGGAACCACGA&AACUGGU-ACAUUCCAAAAUAA	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN15394_c0_g1_1241_TPlot.pdf
TRINITY_DN15394_c0_g1:1320	si_a500	TRINITY_DN15394_c0_g1	1309	1328	1320	-34.40	-23.10	0.671511627906977	6	1-9,1328-1320;11-18,1319-1312;20-21,1310-1309	10-10,x-x[BULq];19-19,1311-1311[SIL]	((.((((((((-(((((((((&))))))))).)))))))).))	UUGGAGGAAGG-GAAGAACGA&UCGUUUUUCGUCUUCCUUGGA	2	0.999945647037012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN15394_c0_g1_1320_TPlot.pdf
TRINITY_DN15394_c0_g1:1323	si_s76	TRINITY_DN15394_c0_g1	1312	1332	1323	-23.60	-17.90	0.758474576271186	14.5	8-21,1325-1312	1-7,1332-1326[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGAAGGGAAGAACGAUCAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999999995761619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN15394_c0_g1_1323_TPlot.pdf
TRINITY_DN15394_c0_g1:897	si_s78	TRINITY_DN15394_c0_g1	885	906	897	-26.20	-17.60	0.67175572519084	12.5	6-12,901-895;13-20,893-886	1-5,906-902[UP5];x-x,894-894[BULt];21-21,885-885[UP3]	.((((((((.(((((((.....&.....)))))))-)))))))).	UGGAGAAAGAGAAAGAACUGCU&UUUUUUUCUUUC-CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15394_c0_g1_897_TPlot.pdf
TRINITY_DN15398_c0_g2:1192	si_a304	TRINITY_DN15398_c0_g2	1180	1201	1192	-30.40	-21.30	0.700657894736842	7	1-12,1201-1190;13-15,1188-1186;18-21,1183-1180	x-x,1189-1189[BULt];16-17,1185-1184[SIL]	((((..(((.((((((((((((&))))))))))))-)))..))))	GAUACUUCCUGAGUGGAUCUUU&AAAGAUUCGCUU-GGAUUUAUC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN15398_c0_g2_1192_TPlot.pdf
TRINITY_DN15399_c0_g2:22	si_a763	TRINITY_DN15399_c0_g2	11	34	22	-28.80	-20.00	0.694444444444444	10	1-9,34-26;10-17,22-15;20-20,12-12	x-x,25-23[BULt];18-19,14-13[SIL];21-21,11-11[UP3]	.(..((((((((...(((((((((&)))))))))---))))))))..).	AGUUUCAAUCAAAGUAAACCCAGA&UUUGGGUUU---UUGAUUGAUUCA	4	0.999944831616923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN15399_c0_g2_22_TPlot.pdf
TRINITY_DN1539_c0_g1:447	si_a313	TRINITY_DN1539_c0_g1	436	456	447	-28.70	-20.50	0.714285714285714	7.5	2-9,455-448;11-20,446-437	1-1,456-456[UP5];10-10,447-447[SIL];21-21,436-436[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UGAGUUAUGGAAGAAUCCAGU&CUUGGAUUUAUCCAUGAUUUU	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN1539_c0_g1_447_TPlot.pdf
TRINITY_DN1539_c0_g1:448	si_a312	TRINITY_DN1539_c0_g1	437	457	448	-31.20	-20.50	0.657051282051282	8.5	3-10,455-448;12-21,446-437	1-2,457-456[UP5];11-11,447-447[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	GAGUUAUGGAAGAAUCCAGUU&GCUUGGAUUUAUCCAUGAUUU	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN1539_c0_g1_448_TPlot.pdf
TRINITY_DN153_c0_g1:1560	si_a21	TRINITY_DN153_c0_g1	1549	1569	1560	-24.30	-17.30	0.711934156378601	7.5	1-3,1569-1567;6-9,1564-1561;11-21,1559-1549	4-5,1566-1565[SIL];10-10,1560-1560[SIL]	(((((((((((.((((..(((&)))..)))).)))))))))))	UUAGAACUGAAUAUGACGAGG&CCUAUUUAUUUUUAGUUCUAA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN153_c0_g1_1560_TPlot.pdf
TRINITY_DN15403_c0_g1:284	si_s76	TRINITY_DN15403_c0_g1	273	293	284	-23.60	-15.60	0.661016949152542	17.5	7-19,287-275	1-6,293-288[UP5];20-21,274-273[UP3]	..(((((((((((((......&......)))))))))))))..	UUGAAGGGAGGGAGGUUUAUG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN15403_c0_g1_284_TPlot.pdf
TRINITY_DN15403_c0_g1:296	si_s72	TRINITY_DN15403_c0_g1	280	305	296	-24.10	-17.10	0.70954356846473	13	1-13,305-293;14-21,287-280	x-x,292-288[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	GAGGGAGGUUUAUGAGAAGGGUGGGA&UUCUAUUUUUUUU-----CUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN15403_c0_g1_296_TPlot.pdf
TRINITY_DN15406_c0_g1:1856	si_a222	TRINITY_DN15406_c0_g1	1841	1865	1856	-25.20	-17.00	0.674603174603175	13.5	4-10,1862-1856;11-21,1851-1841	1-3,1865-1863[UP5];x-x,1855-1852[BULt]	(((((((((((....(((((((...&...)))))))----)))))))))))	AUUAUAGGAACGAUAAUGAGUUAAG&UUAAACUCAU----GUUUCUAUAAU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN15406_c0_g1_1856_TPlot.pdf
TRINITY_DN15408_c0_g1:2218	si_s523	TRINITY_DN15408_c0_g1	2207	2228	2218	-24.50	-16.30	0.66530612244898	11	2-9,2227-2220;12-21,2216-2207	1-1,2228-2228[UP5];10-11,2219-2217[AILt]	((((((((((...((((((((.&.))))))))-..))))))))))	CAGAAGUGAUGGACGGAUUGGU&CUUAAUUCG-AAAUCAUUUUUG	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN15408_c0_g1_2218_TPlot.pdf
TRINITY_DN1540_c0_g2:109	si_s73	TRINITY_DN1540_c0_g2	98	124	109	-24.00	-15.70	0.654166666666667	17	2-6,123-119;7-21,112-98	1-1,124-124[UP5];x-x,118-113[BULt]	(((((((((((((((......(((((.&.)))))------)))))))))))))))	AAAGGGGAGGAGAGAUAAACCAAUAGC&UCUAUU------UUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1540_c0_g2_109_TPlot.pdf
TRINITY_DN1540_c0_g2:439	si_a755	TRINITY_DN1540_c0_g2	429	449	439	-34.90	-24.80	0.710601719197708	6.5	1-3,449-447;4-10,445-439;12-20,438-430	x-x,446-446[BULt];11-11,x-x[BULq];21-21,429-429[UP3]	.(((((((((-(((((((.(((&)))-))))))).))))))))).	CUAGAAGCCC-AAGGAGGCUUC&GAA-CCUCCUUUGGGUUUUUGA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN1540_c0_g2_439_TPlot.pdf
TRINITY_DN1540_c0_g2:442	si_a752	TRINITY_DN1540_c0_g2	432	452	442	-34.80	-22.70	0.652298850574713	9	4-6,449-447;7-13,445-439;15-21,438-432	1-3,452-450[UP5];x-x,446-446[BULt];14-14,x-x[BULq]	(((((((-(((((((.(((...&...)))-))))))).)))))))	GAAGCCC-AAGGAGGCUUCCAA&CAUGAA-CCUCCUUUGGGUUUU	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN1540_c0_g2_442_TPlot.pdf
TRINITY_DN1540_c0_g2:600	si_a505	TRINITY_DN1540_c0_g2	589	609	600	-33.30	-21.90	0.657657657657658	5.5	1-10,609-600;12-15,598-595;17-20,593-590	11-11,599-599[SIL];16-16,594-594[SIL];21-21,589-589[UP3]	.((((.((((.((((((((((&)))))))))).)))).)))).	CGCAUCCCGAAGAAGACGAAG&UUUCGUCUUCCUUGGAAUGUA	3	0.999993758972638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN1540_c0_g2_600_TPlot.pdf
TRINITY_DN1540_c0_g2:601	si_a504	TRINITY_DN1540_c0_g2	590	610	601	-32.90	-22.10	0.671732522796353	6	2-11,609-600;13-16,598-595;18-21,593-590	1-1,610-610[UP5];12-12,599-599[SIL];17-17,594-594[SIL]	((((.((((.((((((((((.&.)))))))))).)))).))))	GCAUCCCGAAGAAGACGAAGG&UUUUCGUCUUCCUUGGAAUGU	2	0.99813651178012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN1540_c0_g2_601_TPlot.pdf
TRINITY_DN1540_c0_g2:602	si_a503	TRINITY_DN1540_c0_g2	591	611	602	-32.10	-22.20	0.691588785046729	4.5	1-12,611-600;14-17,598-595;19-21,593-591	13-13,599-599[SIL];18-18,594-594[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	CAUCCCGAAGAAGACGAAGGA&UUUUUCGUCUUCCUUGGAAUG	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1540_c0_g2_602_TPlot.pdf
TRINITY_DN1540_c0_g2:604	si_a501	TRINITY_DN1540_c0_g2	593	613	604	-33.50	-22.80	0.680597014925373	7.5	1-1,613-613;3-14,611-600;16-19,598-595	2-2,612-612[SIL];15-15,599-599[SIL];20-21,594-593[UP3]	..((((.((((((((((((.(&).)))))))))))).))))..	UCCCGAAGAAGACGAAGGAGG&CGUUUUUCGUCUUCCUUGGAA	2	0.999907178014106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN1540_c0_g2_604_TPlot.pdf
TRINITY_DN1540_c0_g2:605	si_a500	TRINITY_DN1540_c0_g2	594	614	605	-34.40	-24.40	0.709302325581395	6.5	1-2,614-613;4-15,611-600;17-20,598-595	3-3,612-612[SIL];16-16,599-599[SIL];21-21,594-594[UP3]	.((((.((((((((((((.((&)).)))))))))))).)))).	CCCGAAGAAGACGAAGGAGGA&UCGUUUUUCGUCUUCCUUGGA	2	0.979157316154238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1540_c0_g2_605_TPlot.pdf
TRINITY_DN1540_c0_g2:606	si_a499	TRINITY_DN1540_c0_g2	595	615	606	-35.20	-23.60	0.670454545454545	6.5	2-3,614-613;5-16,611-600;18-21,598-595	1-1,615-615[UP5];4-4,612-612[SIL];17-17,599-599[SIL]	((((.((((((((((((.((.&.)).)))))))))))).))))	CCGAAGAAGACGAAGGAGGAA&GUCGUUUUUCGUCUUCCUUGG	3	0.999999998569618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1540_c0_g2_606_TPlot.pdf
TRINITY_DN1540_c0_g2:607	si_s84	TRINITY_DN1540_c0_g2	596	617	607	-32.30	-24.80	0.767801857585139	6	1-6,617-612;7-11,610-606;13-21,604-596	x-x,611-611[BULt];12-12,605-605[SIL]	(((((((((.(((((.((((((&))))))-))))).)))))))))	CGAAGAAGACGAAGGAGGAAGA&UCUUUC-CUUUCUUCUUCUUCG	2	0.979157316154238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1540_c0_g2_607_TPlot.pdf
TRINITY_DN1540_c0_g2:608	si_s83	TRINITY_DN1540_c0_g2	597	618	608	-30.90	-22.90	0.741100323624595	6	2-7,617-612;8-12,610-606;14-21,604-597	1-1,618-618[UP5];x-x,611-611[BULt];13-13,605-605[SIL]	((((((((.(((((.((((((.&.))))))-))))).))))))))	GAAGAAGACGAAGGAGGAAGAC&UUCUUUC-CUUUCUUCUUCUUC	2	0.999951406790964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1540_c0_g2_608_TPlot.pdf
TRINITY_DN1540_c0_g2:609	si_s77	TRINITY_DN1540_c0_g2	597	618	609	-25.50	-17.10	0.670588235294118	7.5	2-13,617-606;15-21,603-597	1-1,618-618[UP5];14-14,605-604[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	GAAGAAGACGAAGGAGGAAGAC&UUUUUUUUCUUUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1540_c0_g2_609_TPlot.pdf
TRINITY_DN1540_c0_g2:610	si_s80	TRINITY_DN1540_c0_g2	597	618	610	-28.20	-19.40	0.687943262411348	7	2-8,617-611;10-13,610-607;14-21,604-597	1-1,618-618[UP5];9-9,x-x[BULq];x-x,606-605[BULt]	((((((((..((((-(((((((.&.))))))).))))--))))))))	GAAGAAGACGAAGG-AGGAAGAC&UUUUUCUUUCCUU--UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1540_c0_g2_610_TPlot.pdf
TRINITY_DN15412_c0_g1:781	si_a19	TRINITY_DN15412_c0_g1	770	791	781	-27.00	-19.12	0.708148148148148	11.5	1-7,791-785;11-20,780-771	8-10,784-781[AILt];21-21,770-770[UP3]	.((((((((((....(((((((&)))))))-...)))))))))).	UGGGCUGAAAAGUUCGUAGGCU&AGCCUAU-UUAUUUUUAGUUCU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN15412_c0_g1_781_TPlot.pdf
TRINITY_DN15413_c0_g1:1038	si_s627	TRINITY_DN15413_c0_g1	1020	1048	1038	-36.10	-25.70	0.71191135734072	19	1-5,1048-1044;6-10,1042-1038;11-21,1030-1020	x-x,1043-1043[BULt];x-x,1037-1031[BULt]	(((((((((((.......(((((.(((((&)))))-)))))-------)))))))))))	GAUGCCUACGAUAACAAUGGAGAGUCGCU&AGCGA-UCUUU-------UCGUAGGCGUU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN15413_c0_g1_1038_TPlot.pdf
TRINITY_DN15413_c0_g1:2568	si_s164	TRINITY_DN15413_c0_g1	2557	2577	2568	-40.20	-26.86	0.668159203980099	9.5	4-13,2574-2565;18-21,2560-2557	1-3,2577-2575[UP5];14-17,2564-2561[SIL]	((((....((((((((((...&...))))))))))....))))	CGUCAUAUCCCCUGGCCAAAA&UCAUGGCCAGGGGUAAAGAUG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN15413_c0_g1_2568_TPlot.pdf
TRINITY_DN15413_c0_g1:2571	si_s161	TRINITY_DN15413_c0_g1	2560	2580	2571	-41.50	-27.70	0.667469879518072	9	1-4,2580-2577;7-16,2574-2565	5-6,2576-2575[SIL];17-21,2564-2560[UP3]	.....((((((((((..((((&))))..)))))))))).....	CAUAUCCCCUGGCCAAAAACC&GGUUCAUGGCCAGGGGUAAAG	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN15413_c0_g1_2571_TPlot.pdf
TRINITY_DN15413_c0_g1:2581	si_a757	TRINITY_DN15413_c0_g1	2570	2596	2581	-33.10	-21.64	0.653776435045317	19	1-6,2596-2591;9-18,2582-2573	7-8,2590-2583[AILt];19-21,2572-2570[UP3]	...((((((((((........((((((&))))))------..))))))))))...	GGCCAAAAACCCACAAGUCGUGGAGGU&ACCUCC------UUUGGGUUUUUGAUU	2	0.999999384373266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN15413_c0_g1_2581_TPlot.pdf
TRINITY_DN15413_c0_g1:2582	si_a756	TRINITY_DN15413_c0_g1	2571	2597	2582	-33.10	-21.84	0.659818731117825	19	2-7,2596-2591;10-19,2582-2573	1-1,2597-2597[UP5];8-9,2590-2583[AILt];20-21,2572-2571[UP3]	..((((((((((........((((((.&.))))))------..))))))))))..	GCCAAAAACCCACAAGUCGUGGAGGUC&AACCUCC------UUUGGGUUUUUGAU	2	0.999993688865964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN15413_c0_g1_2582_TPlot.pdf
TRINITY_DN15413_c0_g1:2952	si_s352	TRINITY_DN15413_c0_g1	2940	2962	2952	-27.20	-18.30	0.672794117647059	7	1-5,2962-2958;6-12,2956-2950;13-20,2948-2941	x-x,2957-2957[BULt];x-x,2949-2949[BULt];21-21,2940-2940[UP3]	.((((((((.(((((((.(((((&)))))-)))))))-)))))))).	AUCAGUCUACUUUCUUUCGUCUU&GAGAU-AAAGAAA-UAGAUUGAA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN15413_c0_g1_2952_TPlot.pdf
TRINITY_DN15413_c0_g1:46	si_s627	TRINITY_DN15413_c0_g1	35	55	46	-36.10	-23.50	0.650969529085873	10	1-3,55-53;6-15,50-41;17-21,39-35	4-5,52-51[SIL];16-16,40-40[SIL]	(((((.((((((((((..(((&)))..)))))))))).)))))	GGCGUGUGCGAGAGGGAGGCU&AGCGAUCUUUUCGUAGGCGUU	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN15413_c0_g1_46_TPlot.pdf
TRINITY_DN15413_c0_g1:864	si_s10	TRINITY_DN15413_c0_g1	853	873	864	-23.80	-16.80	0.705882352941177	10.5	1-16,873-858	17-21,857-853[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGACAGUGGUGAUGGUGAGUG&UACUUAUUAUUACUAUAUUGA	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN15413_c0_g1_864_TPlot.pdf
TRINITY_DN15413_c0_g1:949	si_a305	TRINITY_DN15413_c0_g1	938	958	949	-32.80	-23.16	0.70609756097561	7	3-14,956-945;19-21,940-938	1-2,958-957[UP5];15-18,944-941[SIL]	(((....((((((((((((..&..))))))))))))....)))	GGACUCCUCCAAGCGAAUCCG&AAGAUUCGCUUGGAUUUAUCC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN15413_c0_g1_949_TPlot.pdf
TRINITY_DN15419_c0_g1:13	si_a411	TRINITY_DN15419_c0_g1	3	22	13	-17.90	-12.10	0.675977653631285	6.5	1-13,22-10;16-20,8-4	14-15,9-9[AILq];21-21,3-3[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	UUUUGUG-AAAUAUAGGCAGA&UUUGUUUAUAUUUAAAUAAAU	4	0.999999989055347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN15419_c0_g1_13_TPlot.pdf
TRINITY_DN15419_c0_g1:14	si_a410	TRINITY_DN15419_c0_g1	4	23	14	-17.80	-12.20	0.685393258426966	6.5	2-14,22-10;17-21,8-4	1-1,23-23[UP5];15-16,9-9[AILq]	(((((.-(((((((((((((.&.)))))))))))))..)))))	UUUGUG-AAAUAUAGGCAGAU&UUUUGUUUAUAUUUAAAUAAA	2	0.999995017964448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN15419_c0_g1_14_TPlot.pdf
TRINITY_DN15420_c0_g1:864	si_s66	TRINITY_DN15420_c0_g1	853	874	864	-26.30	-19.30	0.73384030418251	7	1-3,874-872;5-8,870-867;9-21,865-853	4-4,871-871[SIL];x-x,866-866[BULt]	(((((((((((((.((((.(((&))).))))-)))))))))))))	GGAAAAAGAGUGGAAAGUGGCU&AGCAACUU-CUAUUUUUUUUCU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN15420_c0_g1_864_TPlot.pdf
TRINITY_DN15424_c0_g1:908	si_s804	TRINITY_DN15424_c0_g1	896	917	908	-27.90	-19.10	0.684587813620072	6	2-10,916-908;12-13,906-905;15-21,902-896	1-1,917-917[UP5];11-11,907-907[SIL];14-14,904-903[AILt]	(((((((..((.(((((((((.&.))))))))).))-.)))))))	GAAAAGGACAAGGAAGAUGAAU&UUUUAUCUUCGUU-ACCUUUUC	2	0.999885305960264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN15424_c0_g1_908_TPlot.pdf
TRINITY_DN15430_c0_g1:416	si_s802	TRINITY_DN15430_c0_g1	405	425	416	-26.40	-18.30	0.693181818181818	4	1-12,425-414;14-16,412-410;18-21,408-405	13-13,413-413[SIL];17-17,409-409[SIL]	((((.(((.((((((((((((&)))))))))))).))).))))	AGAGUUGAGGAAGAUGAAAUA&UAUUUUAUCUUCGUUACCUUU	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN15430_c0_g1_416_TPlot.pdf
TRINITY_DN15435_c0_g1:175	si_a289	TRINITY_DN15435_c0_g1	164	184	175	-28.20	-18.60	0.659574468085106	10	1-12,184-173	13-21,172-164[UP3]	.........((((((((((((&)))))))))))).........	UUUAAAUACGAAUCCAAGCGA&UCGCUUGGAUUUAAAAAAGAU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN15435_c0_g1_175_TPlot.pdf
TRINITY_DN15435_c0_g1:177	si_a287	TRINITY_DN15435_c0_g1	166	186	177	-29.20	-20.20	0.691780821917808	8.5	2-14,185-173	1-1,186-186[UP5];15-21,172-166[UP3]	.......(((((((((((((.&.))))))))))))).......	UAAAUACGAAUCCAAGCGAUA&GAUCGCUUGGAUUUAAAAAAG	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN15435_c0_g1_177_TPlot.pdf
TRINITY_DN15435_c0_g1:184	si_a301	TRINITY_DN15435_c0_g1	173	193	184	-27.80	-18.60	0.669064748201439	17.5	10-21,184-173	1-9,193-185[UP5]	((((((((((((.........&.........))))))))))))	GAAUCCAAGCGAUAGUUCAGU&AAAAAAGAUUCGCUUGGAUUU	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN15435_c0_g1_184_TPlot.pdf
TRINITY_DN1543_c0_g1:1395	si_s692	TRINITY_DN1543_c0_g1	1385	1404	1395	-24.20	-16.00	0.661157024793388	6	1-14,1404-1391;16-19,1390-1387	15-15,x-x[BULq];20-21,1386-1385[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	UCUAGG-CGACUAGUUAAAUU&AGUUUAAUUAGUCGAUUUAUU	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN1543_c0_g1_1395_TPlot.pdf
TRINITY_DN1543_c0_g1:262	si_s92	TRINITY_DN1543_c0_g1	250	271	262	-34.90	-23.60	0.67621776504298	3.5	1-12,271-260;14-15,258-257;16-20,255-251	13-13,259-259[SIL];x-x,256-256[BULt];21-21,250-250[UP3]	.(((((.((.((((((((((((&)))))))))))).))-))))).	UUCUGAGAGAGAAGAAGAAGAA&UUCUUCUUCUUCGCU-UCGGAU	3	0.999999999857706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1543_c0_g1_262_TPlot.pdf
TRINITY_DN1543_c0_g1:265	si_s69	TRINITY_DN1543_c0_g1	254	274	265	-23.40	-18.40	0.786324786324786	8	3-7,272-268;9-21,266-254	1-2,274-273[UP5];8-8,267-267[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGAGAGAAGAAGAAGAAGCA&AACUUCUAUUUUUUUUCUUUC	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1543_c0_g1_265_TPlot.pdf
TRINITY_DN1543_c0_g2:123	si_a487	TRINITY_DN1543_c0_g2	112	131	123	-24.80	-16.60	0.669354838709677	8.5	2-8,130-124;10-18,123-115	1-1,131-131[UP5];9-9,x-x[BULq];19-21,114-112[UP3]	...(((((((((-(((((((.&.))))))).)))))))))...	GACAACGGCAUG-UCUAUGUC&UAUAUAGAAUAUGUCGUUUUU	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN1543_c0_g2_123_TPlot.pdf
TRINITY_DN1543_c0_g2:124	si_a486	TRINITY_DN1543_c0_g2	113	132	124	-24.90	-16.60	0.666666666666667	9.5	3-9,130-124;11-19,123-115	1-2,132-131[UP5];10-10,x-x[BULq];20-21,114-113[UP3]	..(((((((((-(((((((..&..))))))).)))))))))..	ACAACGGCAUG-UCUAUGUCU&UUAUAUAGAAUAUGUCGUUUU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN1543_c0_g2_124_TPlot.pdf
TRINITY_DN1543_c3_g1:889	si_s509	TRINITY_DN1543_c3_g1	878	898	889	-22.80	-14.90	0.653508771929825	7	2-13,897-886;15-17,884-882	1-1,898-898[UP5];14-14,885-885[SIL];18-21,881-878[UP3]	....(((.((((((((((((.&.)))))))))))).)))....	AAUAAAGCAUAUAGAGUUGUC&AACAAUUCUAUAUUCUUAAUU	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN1543_c3_g1_889_TPlot.pdf
TRINITY_DN15440_c0_g1:589	si_a471	TRINITY_DN15440_c0_g1	578	598	589	-21.10	-13.90	0.658767772511848	13	6-20,593-579	1-5,598-594[UP5];21-21,578-578[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUAUGGCAAUAGUUAUGGUAG&AAUAUGUAAUUAUUGUUAUAU	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN15440_c0_g1_589_TPlot.pdf
TRINITY_DN15440_c0_g1:732	si_a481	TRINITY_DN15440_c0_g1	721	741	732	-25.60	-16.66	0.65078125	8.5	1-11,741-731;16-21,726-721	12-15,730-727[SIL]	((((((....(((((((((((&)))))))))))....))))))	GACAUAGCGGAUAUGGCAGUG&UAUUGUUAUAUAGAAUAUGUC	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN15440_c0_g1_732_TPlot.pdf
TRINITY_DN15446_c0_g1:178	si_s77	TRINITY_DN15446_c0_g1	167	187	178	-25.50	-16.70	0.654901960784314	2	1-12,187-176;15-21,173-167	13-14,175-174[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAACUAAAGAAAAAAAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN15446_c0_g1_178_TPlot.pdf
TRINITY_DN1544_c0_g1:1156	si_s664	TRINITY_DN1544_c0_g1	1143	1165	1156	-35.00	-23.20	0.662857142857143	7.5	1-13,1165-1153;14-19,1150-1145	x-x,1152-1151[BULt];20-21,1144-1143[UP3]	..((((((..(((((((((((((&)))))))))))))--))))))..	UGAUGAUCUGAGUUUGAUCCUCC&GGGGGAUCGAAUU--GAUUAUAG	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s664_TRINITY_DN1544_c0_g1_1156_TPlot.pdf
TRINITY_DN1544_c0_g1:1157	si_s663	TRINITY_DN1544_c0_g1	1144	1166	1157	-34.80	-23.30	0.669540229885058	7	2-14,1165-1153;15-20,1150-1145	1-1,1166-1166[UP5];x-x,1152-1151[BULt];21-21,1144-1144[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	GAUGAUCUGAGUUUGAUCCUCCA&CGGGGGAUCGAAUU--GAUUAUA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s663_TRINITY_DN1544_c0_g1_1157_TPlot.pdf
TRINITY_DN1544_c0_g1:1180	si_a194	TRINITY_DN1544_c0_g1	1169	1189	1180	-29.40	-19.80	0.673469387755102	11.5	1-7,1189-1183;9-14,1181-1176	8-8,1182-1182[SIL];15-21,1175-1169[UP3]	.......((((((.(((((((&))))))).)))))).......	ACGACAAGGUGAGGAGGGAGA&UUUCCCUGUUCACUAAUAAAU	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN1544_c0_g1_1180_TPlot.pdf
TRINITY_DN1544_c0_g1:1184	si_s802	TRINITY_DN1544_c0_g1	1173	1192	1184	-26.40	-17.30	0.65530303030303	8	1-6,1192-1187;8-12,1186-1182;14-20,1180-1174	7-7,x-x[BULq];13-13,1181-1181[SIL];21-21,1173-1173[UP3]	.(((((((.(((((-((((((&)))))).))))).))))))).	CAAGGUGAGGAGGG-AGAAUG&UAUUUUAUCUUCGUUACCUUU	3	0.999999999993951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1544_c0_g1_1184_TPlot.pdf
TRINITY_DN1544_c0_g1:1186	si_s87	TRINITY_DN1544_c0_g1	1175	1196	1186	-32.90	-23.20	0.70516717325228	7.5	1-3,1196-1194;4-4,1192-1192;6-21,1190-1175	x-x,1193-1193[BULt];5-5,1191-1191[SIL]	((((((((((((((((.(.(((&)))-).))))))))))))))))	AGGUGAGGAGGGAGAAUGUGAA&UUC-CUUUCUUCUUCUUCGCUU	4	0.999999999837681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1544_c0_g1_1186_TPlot.pdf
TRINITY_DN1544_c0_g1:1251	si_s88	TRINITY_DN1544_c0_g1	1241	1261	1251	-34.80	-23.80	0.683908045977012	8.5	1-7,1261-1255;9-11,1252-1250;13-20,1249-1242	8-8,1254-1253[AILt];12-12,x-x[BULq];21-21,1241-1241[UP3]	.((((((((-(((..(((((((&)))))))-.))).)))))))).	AGAGCGAAG-AGAUCGAGAGGA&UCCUUUC-UUCUUCUUCGCUUC	2	0.999999722426073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1544_c0_g1_1251_TPlot.pdf
TRINITY_DN1544_c0_g1:1252	si_s87	TRINITY_DN1544_c0_g1	1242	1262	1252	-32.90	-23.80	0.723404255319149	7.5	2-8,1261-1255;10-12,1252-1250;14-21,1249-1242	1-1,1262-1262[UP5];9-9,1254-1253[AILt];13-13,x-x[BULq]	((((((((-(((..(((((((.&.)))))))-.))).))))))))	GAGCGAAG-AGAUCGAGAGGAU&UUCCUUUC-UUCUUCUUCGCUU	2	0.999813642315252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1544_c0_g1_1252_TPlot.pdf
TRINITY_DN1544_c0_g1:1253	si_s622	TRINITY_DN1544_c0_g1	1242	1262	1253	-34.20	-22.68	0.663157894736842	9	1-4,1262-1259;8-19,1255-1244	5-7,1258-1256[SIL];20-21,1243-1242[UP3]	..((((((((((((...((((&))))...))))))))))))..	GAGCGAAGAGAUCGAGAGGAU&AUCCAAGCGAUCUUUUCGUAG	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN1544_c0_g1_1253_TPlot.pdf
TRINITY_DN1544_c0_g1:1288	si_a144	TRINITY_DN1544_c0_g1	1277	1297	1288	-27.40	-18.10	0.66058394160584	12.5	4-13,1294-1285;16-21,1282-1277	1-3,1297-1295[UP5];14-15,1284-1283[SIL]	((((((..((((((((((...&...))))))))))..))))))	CCUUAGUUCGGCGGCGGUGUC&UUAAUCGUUGUUGUUUUAAGG	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN1544_c0_g1_1288_TPlot.pdf
TRINITY_DN1544_c0_g1:1448	si_s481	TRINITY_DN1544_c0_g1	1437	1460	1448	-23.00	-16.14	0.701739130434783	12	1-5,1460-1456;7-20,1451-1438	6-6,1455-1452[AILt];21-21,1437-1437[UP3]	.((((((((((((((....(((((&)))))---.)))))))))))))).	AGUUUAGAUAGAUAUUAUUGGGUC&GAUCC---UAUAUUUAUUUAAAUA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN1544_c0_g1_1448_TPlot.pdf
TRINITY_DN1544_c0_g1:1840	si_a326	TRINITY_DN1544_c0_g1	1828	1848	1840	-26.20	-17.70	0.675572519083969	8	2-3,1847-1846;5-14,1845-1836;15-21,1834-1828	1-1,1848-1848[UP5];4-4,x-x[BULq];x-x,1835-1835[BULt]	(((((((.((((((((((-((.&.)).))))))))))-)))))))	GGCAAGGCAGUGAAGAAG-CAG&AUGAUUUUUUUAUU-CCUUGUC	4	0.999999913764069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1544_c0_g1_1840_TPlot.pdf
TRINITY_DN1544_c0_g1:2447	si_a839	TRINITY_DN1544_c0_g1	2436	2456	2447	-26.50	-17.60	0.664150943396226	12	6-21,2451-2436	1-5,2456-2452[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGUUAGCAAUUUUUACAACA&AAAAAUAGAAGUUGCUAACUU	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN1544_c0_g1_2447_TPlot.pdf
TRINITY_DN1544_c0_g1:4818	si_s84	TRINITY_DN1544_c0_g1	4807	4828	4818	-32.30	-22.20	0.687306501547988	10	1-3,4828-4826;5-7,4823-4821;9-20,4819-4808	4-4,4825-4824[AILt];8-8,4820-4820[SIL];21-21,4807-4807[UP3]	.((((((((((((.(((..(((&)))-.))).)))))))))))).	AGAGGAGGAGGAACGGAUUGGA&UCU-UUCCUUUCUUCUUCUUCG	3	0.999999999999965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1544_c0_g1_4818_TPlot.pdf
TRINITY_DN1544_c0_g1:4829	si_a794	TRINITY_DN1544_c0_g1	4818	4838	4829	-28.60	-19.30	0.674825174825175	12	4-6,4835-4833;9-19,4830-4820	1-3,4838-4836[UP5];7-8,4832-4831[SIL];20-21,4819-4818[UP3]	..(((((((((((..(((...&...)))..)))))))))))..	AACGGAUUGGAGACGAGACGG&UUUUCUAUUUUCCAAUCCGAA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1544_c0_g1_4829_TPlot.pdf
TRINITY_DN1544_c0_g1:4830	si_a793	TRINITY_DN1544_c0_g1	4819	4839	4830	-28.50	-19.30	0.67719298245614	10	1-3,4839-4837;5-7,4835-4833;10-20,4830-4820	4-4,4836-4836[SIL];8-9,4832-4831[SIL];21-21,4819-4819[UP3]	.(((((((((((..(((.(((&))).)))..))))))))))).	ACGGAUUGGAGACGAGACGGA&UUUUUCUAUUUUCCAAUCCGA	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN1544_c0_g1_4830_TPlot.pdf
TRINITY_DN1544_c0_g1:4839	si_a496	TRINITY_DN1544_c0_g1	4824	4848	4839	-32.40	-21.80	0.67283950617284	15	1-11,4848-4838;12-19,4833-4826	x-x,4837-4834[BULt];20-21,4825-4824[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	UUGGAGACGAGACGGAGACGGCGUG&UAUGUCGUUUU----UCGUCUUCCU	4	0.99999999958905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1544_c0_g1_4839_TPlot.pdf
TRINITY_DN1544_c0_g1:4840	si_a495	TRINITY_DN1544_c0_g1	4825	4849	4840	-31.90	-21.80	0.683385579937304	15.5	2-12,4848-4838;13-20,4833-4826	1-1,4849-4849[UP5];x-x,4837-4834[BULt];21-21,4825-4825[UP3]	.((((((((....(((((((((((.&.)))))))))))----)))))))).	UGGAGACGAGACGGAGACGGCGUGA&AUAUGUCGUUUU----UCGUCUUCC	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1544_c0_g1_4840_TPlot.pdf
TRINITY_DN1544_c0_g1:4841	si_a494	TRINITY_DN1544_c0_g1	4826	4850	4841	-29.50	-21.80	0.738983050847458	12	3-13,4848-4838;14-21,4833-4826	1-2,4850-4849[UP5];x-x,4837-4834[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	GGAGACGAGACGGAGACGGCGUGAU&AAUAUGUCGUUUU----UCGUCUUC	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1544_c0_g1_4841_TPlot.pdf
TRINITY_DN1544_c0_g1:697	si_s625	TRINITY_DN1544_c0_g1	686	706	697	-37.00	-25.80	0.697297297297297	7	1-11,706-696;13-16,694-691;18-21,689-686	12-12,695-695[SIL];17-17,690-690[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	UGCCGACGGUGGGAUUGCUUG&CAAGCGAUCUUUUCGUAGGCG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN1544_c0_g1_697_TPlot.pdf
TRINITY_DN1544_c0_g1:784	si_s291	TRINITY_DN1544_c0_g1	772	794	784	-38.10	-25.50	0.669291338582677	9.5	1-4,794-791;6-10,788-784;12-14,781-779;16-21,777-772	5-5,790-789[AILt];11-11,783-782[AILt];15-15,778-778[SIL]	((((((.(((..(((((..((((&))))-.)))))-.))).))))))	CGCGAUCCCAUUUCGACCGAGGC&GCCU-AGUCGA-UUGGAAUUGCG	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN1544_c0_g1_784_TPlot.pdf
TRINITY_DN1544_c0_g2:2046	si_s439	TRINITY_DN1544_c0_g2	2035	2055	2046	-21.50	-14.60	0.67906976744186	9	5-14,2051-2042;16-21,2040-2035	1-4,2055-2052[UP5];15-15,2041-2041[SIL]	((((((.((((((((((....&....)))))))))).))))))	UGUUAUUUAUGAUAUGUUUAG&AAUUACAUAUUAUAUAUAACA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN1544_c0_g2_2046_TPlot.pdf
TRINITY_DN1544_c0_g2:2184	si_s889	TRINITY_DN1544_c0_g2	2173	2193	2184	-28.80	-20.40	0.708333333333333	18	10-21,2184-2173	1-9,2193-2185[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGGGAGCCAUUCAGGAA&AAAUAAAUAGGCUUUCUCUUC	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN1544_c0_g2_2184_TPlot.pdf
TRINITY_DN1544_c0_g2:28	si_a64	TRINITY_DN1544_c0_g2	15	37	28	-29.40	-19.40	0.659863945578231	7.5	1-10,37-28;11-13,26-24;15-17,21-19;19-21,17-15	x-x,27-27[BULt];14-14,23-22[AILt];18-18,18-18[SIL]	(((.(((..(((.((((((((((&))))))))))-)))-.))).)))	GGAGGAUGCUGAUAAGAGGCGAG&CUCGCUUCUU-UCA-AAUUGUUU	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN1544_c0_g2_28_TPlot.pdf
TRINITY_DN1544_c0_g2:981	si_a67	TRINITY_DN1544_c0_g2	970	990	981	-27.20	-18.00	0.661764705882353	10	1-11,990-980;13-17,978-974	12-12,979-979[SIL];18-21,973-970[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CGUCAGCGAGUUGAGGGAGGC&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999998442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1544_c0_g2_981_TPlot.pdf
TRINITY_DN15451_c0_g1:110	si_a640	TRINITY_DN15451_c0_g1	99	119	110	-24.10	-16.00	0.663900414937759	9	2-16,118-104	1-1,119-119[UP5];17-21,103-99[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUGCCGUUGCUCAAAGAGAUG&GAUUUUUUUGAGUAAUAUAUC	4	0.999964968133447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN15451_c0_g1_110_TPlot.pdf
TRINITY_DN15453_c1_g3:3608	si_s71	TRINITY_DN15453_c1_g3	3597	3618	3608	-25.70	-20.60	0.801556420233463	5	1-6,3618-3613;7-16,3611-3602;18-21,3600-3597	x-x,3612-3612[BULt];17-17,3601-3601[SIL]	((((.((((((((((.((((((&))))))-)))))))))).))))	AGGAUAGAAGAAGAAUUAGAAG&CUUCUA-UUUUUUUUCUUUCCU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN15453_c1_g3_3608_TPlot.pdf
TRINITY_DN15453_c1_g3:706	si_s83	TRINITY_DN15453_c1_g3	695	715	706	-30.90	-21.50	0.6957928802589	8	1-3,715-713;6-18,710-698	4-5,712-711[SIL];19-21,697-695[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UAUGAAGGAGAAAGGAUCGAG&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN15453_c1_g3_706_TPlot.pdf
TRINITY_DN15454_c0_g1:270	si_a600	TRINITY_DN15454_c0_g1	259	280	270	-29.70	-20.00	0.673400673400673	8	2-8,279-273;9-19,271-261	1-1,280-280[UP5];x-x,272-272[BULt];20-21,260-259[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	AAUGGAAUUGCGAUGGAUUUUA&CAGAAUUU-UCGCAAUUCCAAU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN15454_c0_g1_270_TPlot.pdf
TRINITY_DN15457_c0_g1:297	si_a153	TRINITY_DN15457_c0_g1	286	305	297	-28.70	-18.90	0.658536585365854	8.5	1-8,305-298;12-21,295-286	9-11,297-296[AILq]	((((((((((..-((((((((&))))))))...))))))))))	AUGGGUUGGCAG-AAAACGAC&GUUGUUUUAAGGUCAAUCUAU	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN15457_c0_g1_297_TPlot.pdf
TRINITY_DN15457_c0_g1:306	si_a143	TRINITY_DN15457_c0_g1	295	315	306	-25.10	-17.30	0.689243027888446	11.5	5-18,311-298	1-4,315-312[UP5];19-21,297-295[UP3]	...((((((((((((((....&....))))))))))))))...	CAGAAAACGACGACGAUCUGC&AUUAAUCGUUGUUGUUUUAAG	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN15457_c0_g1_306_TPlot.pdf
TRINITY_DN15462_c0_g1:33	si_a411	TRINITY_DN15462_c0_g1	22	42	33	-17.90	-12.00	0.670391061452514	7.5	3-11,40-32;13-21,30-22	1-2,42-41[UP5];12-12,31-31[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUUUAUUUGUAUAUGAAUAUG&UUUGUUUAUAUUUAAAUAAAU	4	0.999999998106834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN15462_c0_g1_33_TPlot.pdf
TRINITY_DN1546_c0_g1:896	si_a577	TRINITY_DN1546_c0_g1	885	904	896	-30.10	-19.90	0.661129568106312	6.5	1-7,904-898;10-20,896-886	8-9,897-897[AILq];21-21,885-885[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	AUUCUUGUUACAU-UAUACGG&UCGUAUGUUUGUAACAAGAAG	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a577_TRINITY_DN1546_c0_g1_896_TPlot.pdf
TRINITY_DN1546_c0_g1:897	si_a576	TRINITY_DN1546_c0_g1	886	905	897	-28.70	-19.70	0.686411149825784	7	2-8,904-898;11-21,896-886	1-1,905-905[UP5];9-10,897-897[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	UUCUUGUUACAU-UAUACGGG&AUCGUAUGUUUGUAACAAGAA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN1546_c0_g1_897_TPlot.pdf
TRINITY_DN1546_c0_g1:898	si_a575	TRINITY_DN1546_c0_g1	887	906	898	-28.60	-18.90	0.660839160839161	9	3-9,904-898;12-21,896-887	1-2,906-905[UP5];10-11,897-897[AILq]	((((((((((.-(((((((..&..)))))))..))))))))))	UCUUGUUACAU-UAUACGGGG&AAUCGUAUGUUUGUAACAAGA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN1546_c0_g1_898_TPlot.pdf
TRINITY_DN1546_c0_g2:880	si_a113	TRINITY_DN1546_c0_g2	869	889	880	-26.20	-17.60	0.67175572519084	13.5	5-15,885-875	1-4,889-886[UP5];16-21,874-869[UP3]	......(((((((((((....&....)))))))))))......	AGUGUUGCAAGCUCGUAAGAA&AAAAUACGAGCUUGUUUUAUA	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN1546_c0_g2_880_TPlot.pdf
TRINITY_DN15471_c0_g1:254	si_a410	TRINITY_DN15471_c0_g1	244	263	254	-17.80	-11.60	0.651685393258427	4	1-13,263-251;15-18,250-247	14-14,x-x[BULq];19-21,246-244[UP3]	...((((-(((((((((((((&))))))))))))).))))...	AAAAUUU-AAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999962104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN15471_c0_g1_254_TPlot.pdf
TRINITY_DN15474_c1_g1:139	si_a256	TRINITY_DN15474_c1_g1	128	148	139	-37.20	-24.40	0.655913978494624	8.5	3-17,146-132	1-2,148-147[UP5];18-21,131-128[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUGCUGCCUUCGAUGCAAUAC&CGAUUGUAUCGAGGGCAAACG	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a256_TRINITY_DN15474_c1_g1_139_TPlot.pdf
TRINITY_DN1547_c0_g1:1558	si_s712	TRINITY_DN1547_c0_g1	1546	1567	1558	-32.00	-22.00	0.6875	6	1-6,1567-1562;8-14,1560-1554;16-21,1551-1546	7-7,1561-1561[SIL];15-15,1553-1552[AILt]	((((((..(((((((.((((((&)))))).)))))))-.))))))	AAUGUCAGUUCCCUGAUCGCUG&UAGUGAACAGGGAA-AGAUAUU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s712_TRINITY_DN1547_c0_g1_1558_TPlot.pdf
TRINITY_DN1547_c0_g1:1759	si_s96	TRINITY_DN1547_c0_g1	1741	1768	1759	-37.20	-25.80	0.693548387096774	10.5	1-10,1768-1759;12-16,1757-1753;17-20,1745-1742	11-11,1758-1758[SIL];x-x,1752-1746[BULt];21-21,1741-1741[UP3]	.((((.......(((((.((((((((((&)))))))))).)))))-------)))).	ACCGAGAUGGCCUCCGACGCGAAGAAGA&UCUUCUUCGCUUCGGA-------UUGGA	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN1547_c0_g1_1759_TPlot.pdf
TRINITY_DN1547_c0_g1:2062	si_a144	TRINITY_DN1547_c0_g1	2050	2071	2062	-27.40	-18.70	0.682481751824818	11.5	5-13,2067-2059;14-21,2057-2050	1-4,2071-2068[UP5];x-x,2058-2058[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	CUUUGAGAGCAGCAGCGAGGAG&UUAAUCGUUGUUG-UUUUAAGG	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN1547_c0_g1_2062_TPlot.pdf
TRINITY_DN1547_c0_g1:2506	si_a758	TRINITY_DN1547_c0_g1	2495	2519	2506	-34.00	-22.30	0.655882352941176	12	2-9,2518-2511;10-19,2506-2497	1-1,2519-2519[UP5];x-x,2510-2507[BULt];20-21,2496-2495[UP3]	..((((((((((....((((((((.&.))))))))----))))))))))..	UCGUCAAGAACCUCGACAAAGGAGU&CCUCCUUUG----GGUUUUUGAUUG	2	0.999975796446657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1547_c0_g1_2506_TPlot.pdf
TRINITY_DN1547_c0_g1:2520	si_a631	TRINITY_DN1547_c0_g1	2509	2529	2520	-25.70	-17.10	0.665369649805448	13	6-19,2524-2511	1-5,2529-2525[UP5];20-21,2510-2509[UP3]	..((((((((((((((.....&.....))))))))))))))..	GACAAAGGAGUCGACAACCGA&UAUUAUGUCGAUUUUUUUGAG	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN1547_c0_g1_2520_TPlot.pdf
TRINITY_DN1547_c0_g1:2952	si_s181	TRINITY_DN1547_c0_g1	2940	2961	2952	-34.60	-22.60	0.653179190751445	9.5	1-10,2961-2952;11-12,2950-2949;14-18,2947-2943	x-x,2951-2951[BULt];13-13,2948-2948[SIL];19-21,2942-2940[UP3]	...(((((.((.((((((((((&))))))))))-)).)))))...	GAAGGUCGAUGCCUCGGGCGUU&GAUGCCCGAG-UAACGAUUAUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN1547_c0_g1_2952_TPlot.pdf
TRINITY_DN1547_c0_g1:725	si_a556	TRINITY_DN1547_c0_g1	706	734	725	-33.40	-22.80	0.682634730538922	14	4-14,731-721;15-20,712-707	1-3,734-732[UP5];x-x,720-713[BULt];21-21,706-706[UP3]	.((((((........(((((((((((...&...)))))))))))--------)))))).	CUCACGGGCUCAUGAGGAGAUAAAGAUGA&AUUUCUUUAUCUCC--------CCGUGAA	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN1547_c0_g1_725_TPlot.pdf
TRINITY_DN1547_c0_g1:761	si_a404	TRINITY_DN1547_c0_g1	750	770	761	-21.70	-15.40	0.709677419354839	8.5	1-8,770-763;10-16,761-755	9-9,762-762[SIL];17-21,754-750[UP3]	.....(((((((.((((((((&)))))))).))))))).....	UGCCAAUGAACAUAGCAAUUC&GAAUUGUUUUGUUUAUAUUUA	2	0.999783623131415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1547_c0_g1_761_TPlot.pdf
TRINITY_DN1547_c0_g1:763	si_a402	TRINITY_DN1547_c0_g1	752	772	763	-22.40	-15.40	0.6875	9.5	3-10,770-763;12-18,761-755	1-2,772-771[UP5];11-11,762-762[SIL];19-21,754-752[UP3]	...(((((((.((((((((..&..)))))))).)))))))...	CCAAUGAACAUAGCAAUUCGG&UAGAAUUGUUUUGUUUAUAUU	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN1547_c0_g1_763_TPlot.pdf
TRINITY_DN1547_c0_g1:765	si_a400	TRINITY_DN1547_c0_g1	754	774	765	-22.80	-15.40	0.675438596491228	10.5	5-12,770-763;14-20,761-755	1-4,774-771[UP5];13-13,762-762[SIL];21-21,754-754[UP3]	.(((((((.((((((((....&....)))))))).))))))).	AAUGAACAUAGCAAUUCGGCU&UAUAGAAUUGUUUUGUUUAUA	4	0.999999902393794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1547_c0_g1_765_TPlot.pdf
TRINITY_DN15480_c0_g1:87	si_a409	TRINITY_DN15480_c0_g1	76	96	87	-19.50	-15.60	0.8	7.5	1-15,96-82	16-21,81-76[UP3]	......(((((((((((((((&)))))))))))))))......	AUCUAGGAAUAUAAACGAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN15480_c0_g1_87_TPlot.pdf
TRINITY_DN15480_c0_g1:88	si_a408	TRINITY_DN15480_c0_g1	77	97	88	-20.10	-15.70	0.781094527363184	7.5	2-16,96-82	1-1,97-97[UP5];17-21,81-77[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCUAGGAAUAUAAACGAAACG&UGUUUUGUUUAUAUUUAAAUA	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN15480_c0_g1_88_TPlot.pdf
TRINITY_DN15480_c0_g1:90	si_a406	TRINITY_DN15480_c0_g1	79	99	90	-19.80	-17.20	0.868686868686869	6.5	2-18,98-82	1-1,99-99[UP5];19-21,81-79[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAGGAAUAUAAACGAAACGAA&AUUGUUUUGUUUAUAUUUAAA	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN15480_c0_g1_90_TPlot.pdf
TRINITY_DN15480_c0_g1:92	si_a404	TRINITY_DN15480_c0_g1	81	101	92	-21.70	-17.20	0.792626728110599	8.5	4-20,98-82	1-3,101-99[UP5];21-21,81-81[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGAAUAUAAACGAAACGAACG&GAAUUGUUUUGUUUAUAUUUA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN15480_c0_g1_92_TPlot.pdf
TRINITY_DN15480_c0_g1:93	si_a403	TRINITY_DN15480_c0_g1	82	102	93	-22.00	-16.80	0.763636363636364	9.5	5-21,98-82	1-4,102-99[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAUAUAAACGAAACGAACGA&AGAAUUGUUUUGUUUAUAUUU	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN15480_c0_g1_93_TPlot.pdf
TRINITY_DN15480_c0_g1:94	si_a402	TRINITY_DN15480_c0_g1	83	103	94	-22.40	-15.50	0.691964285714286	11	6-21,98-83	1-5,103-99[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUAUAAACGAAACGAACGAA&UAGAAUUGUUUUGUUUAUAUU	4	0.999999411941571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN15480_c0_g1_94_TPlot.pdf
TRINITY_DN15483_c1_g1:300	si_s882	TRINITY_DN15483_c1_g1	289	309	300	-26.30	-17.80	0.67680608365019	3	1-13,309-297;15-20,295-290	14-14,296-296[SIL];21-21,289-289[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UAGUUUAGUUAUUUUUAGUUC&GAACUAAAAAUAAAUAGGCUU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN15483_c1_g1_300_TPlot.pdf
TRINITY_DN15483_c1_g1:301	si_s881	TRINITY_DN15483_c1_g1	290	310	301	-27.00	-19.20	0.711111111111111	2	1-14,310-297;16-21,295-290	15-15,296-296[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	AGUUUAGUUAUUUUUAGUUCU&AGAACUAAAAAUAAAUAGGCU	0	0.00797279978795895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s881_TRINITY_DN15483_c1_g1_301_TPlot.pdf
TRINITY_DN15494_c0_g1:108	si_a406	TRINITY_DN15494_c0_g1	97	117	108	-19.80	-12.90	0.651515151515151	9.5	2-11,116-107;13-18,105-100	1-1,117-117[UP5];12-12,106-106[SIL];19-21,99-97[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	AAGAAAUGUUGGCGAAACAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN15494_c0_g1_108_TPlot.pdf
TRINITY_DN15494_c0_g1:109	si_a405	TRINITY_DN15494_c0_g1	98	118	109	-19.80	-12.90	0.651515151515151	9.5	3-12,116-107;14-19,105-100	1-2,118-117[UP5];13-13,106-106[SIL];20-21,99-98[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	AGAAAUGUUGGCGAAACAAAG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN15494_c0_g1_109_TPlot.pdf
TRINITY_DN15494_c0_g1:387	si_s68	TRINITY_DN15494_c0_g1	375	396	387	-23.10	-21.40	0.926406926406926	2	1-17,396-380;18-21,378-375	x-x,379-379[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	GAAGUAGAAAAAAUAGAAGUUG&CAACUUCUAUUUUUUUU-CUUU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN15494_c0_g1_387_TPlot.pdf
TRINITY_DN15494_c0_g1:559	si_s68	TRINITY_DN15494_c0_g1	547	568	559	-23.10	-17.90	0.774891774891775	5	3-17,566-552;18-21,550-547	1-2,568-567[UP5];x-x,551-551[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GAAGUAGAAAAAAUAGAAGUGG&CAACUUCUAUUUUUUUU-CUUU	2	0.966553182246443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN15494_c0_g1_559_TPlot.pdf
TRINITY_DN15497_c0_g2:1044	si_a747	TRINITY_DN15497_c0_g2	1026	1054	1044	-41.30	-27.40	0.663438256658596	19	1-7,1054-1048;8-10,1046-1044;11-21,1036-1026	x-x,1047-1047[BULt];x-x,1043-1037[BULt]	(((((((((((.......(((.(((((((&)))))))-)))-------)))))))))))	CCAGAGGGGGUGGGUAGCUCAGUGGUUAG&CUGGCCA-UGA-------ACCUCCUUUGG	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN15497_c0_g2_1044_TPlot.pdf
TRINITY_DN15497_c0_g2:1075	si_a755	TRINITY_DN15497_c0_g2	1064	1088	1075	-34.90	-23.30	0.667621776504298	15.5	1-6,1088-1083;7-17,1078-1068	x-x,1082-1079[BULt];18-21,1067-1064[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CUCCGGGCCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN15497_c0_g2_1075_TPlot.pdf
TRINITY_DN15497_c0_g2:1076	si_a754	TRINITY_DN15497_c0_g2	1065	1089	1076	-34.60	-24.30	0.702312138728324	14.5	1-7,1089-1083;8-18,1078-1068	x-x,1082-1079[BULt];19-21,1067-1065[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UCCGGGCCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN15497_c0_g2_1076_TPlot.pdf
TRINITY_DN1549_c0_g2:1253	si_a406	TRINITY_DN1549_c0_g2	1242	1262	1253	-19.80	-13.20	0.666666666666667	12.5	2-14,1261-1249	1-1,1262-1262[UP5];15-21,1248-1242[UP3]	.......(((((((((((((.&.))))))))))))).......	UUACUGGGUAGACAGAGCAGG&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1549_c0_g2_1253_TPlot.pdf
TRINITY_DN1549_c0_g2:135	si_a356	TRINITY_DN1549_c0_g2	123	144	135	-26.90	-18.20	0.676579925650558	10	3-13,142-132;14-19,130-125	1-2,144-143[UP5];x-x,131-131[BULt];20-21,124-123[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	CACCGAUCAAGAAUGGGGUUUU&UUAAUUCUAUUUU-GAUCGGAU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN1549_c0_g2_135_TPlot.pdf
TRINITY_DN1549_c0_g2:66	si_a899	TRINITY_DN1549_c0_g2	55	75	66	-18.70	-14.30	0.764705882352941	10	2-16,74-60	1-1,75-75[UP5];17-21,59-55[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUGUGGUGUUGCUUGUUGUUC&UAAUAAUAAGUAAUAUAAAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1549_c0_g2_66_TPlot.pdf
TRINITY_DN1549_c0_g2:68	si_a897	TRINITY_DN1549_c0_g2	57	78	68	-21.20	-15.50	0.731132075471698	9.5	2-3,77-76;4-18,74-60	1-1,78-78[UP5];x-x,75-75[BULt];19-21,59-57[UP3]	...(((((((((((((((.((.&.))-)))))))))))))))...	GUGGUGUUGCUUGUUGUUCACA&AGU-AAUAAUAAGUAAUAUAAA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN1549_c0_g2_68_TPlot.pdf
TRINITY_DN1549_c0_g2:69	si_a896	TRINITY_DN1549_c0_g2	58	79	69	-21.60	-15.50	0.717592592592593	10.5	3-4,77-76;5-19,74-60	1-2,79-78[UP5];x-x,75-75[BULt];20-21,59-58[UP3]	..(((((((((((((((.((..&..))-)))))))))))))))..	UGGUGUUGCUUGUUGUUCACAU&UAGU-AAUAAUAAGUAAUAUAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN1549_c0_g2_69_TPlot.pdf
TRINITY_DN1549_c0_g2:70	si_a895	TRINITY_DN1549_c0_g2	59	80	70	-21.70	-15.50	0.714285714285714	11.5	4-5,77-76;6-20,74-60	1-3,80-78[UP5];x-x,75-75[BULt];21-21,59-59[UP3]	.(((((((((((((((.((...&...))-))))))))))))))).	GGUGUUGCUUGUUGUUCACAUU&AUAGU-AAUAAUAAGUAAUAUA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN1549_c0_g2_70_TPlot.pdf
TRINITY_DN154_c0_g1:330	si_s435	TRINITY_DN154_c0_g1	319	339	330	-20.90	-13.70	0.655502392344498	7.5	1-4,339-336;6-17,334-323	5-5,335-335[SIL];18-21,322-319[UP3]	....((((((((((((.((((&)))).))))))))))))....	GCAAAUAGUAUGUAGUGAUUG&CAAUAAUUACAUAUUAUAUAU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN154_c0_g1_330_TPlot.pdf
TRINITY_DN154_c0_g1:331	si_s434	TRINITY_DN154_c0_g1	320	340	331	-21.50	-15.20	0.706976744186047	6.5	1-5,340-336;7-18,334-323	6-6,335-335[SIL];19-21,322-320[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CAAAUAGUAUGUAGUGAUUGU&ACAAUAAUUACAUAUUAUAUA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN154_c0_g1_331_TPlot.pdf
TRINITY_DN154_c0_g1:333	si_s432	TRINITY_DN154_c0_g1	322	342	333	-21.30	-17.20	0.807511737089202	5	1-7,342-336;9-20,334-323	8-8,335-335[SIL];21-21,322-322[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AAUAGUAUGUAGUGAUUGUUG&UAACAAUAAUUACAUAUUAUA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN154_c0_g1_333_TPlot.pdf
TRINITY_DN154_c0_g1:339	si_s761	TRINITY_DN154_c0_g1	329	348	339	-25.90	-18.00	0.694980694980695	7	3-15,346-334;17-20,333-330	1-2,348-347[UP5];16-16,x-x[BULq];21-21,329-329[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	UGUAG-UGAUUGUUGUUGUAC&AAACAACAACGAUUAAUUACU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN154_c0_g1_339_TPlot.pdf
TRINITY_DN154_c0_g1:342	si_s426	TRINITY_DN154_c0_g1	331	351	342	-23.60	-16.20	0.686440677966102	11	5-19,347-333	1-4,351-348[UP5];20-21,332-331[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAGUGAUUGUUGUUGUACCUA&UCUAUAUAACAAUAAUUACAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN154_c0_g1_342_TPlot.pdf
TRINITY_DN15500_c0_g1:706	si_a295	TRINITY_DN15500_c0_g1	695	714	706	-27.50	-18.00	0.654545454545455	11.5	1-5,714-710;11-21,705-695	6-10,709-706[AILq]	(((((((((((....-(((((&))))).....)))))))))))	AGGUGGAUCUUGUCU-AAUCC&GGAUUUAAAAAAGAUUCGCUU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN15500_c0_g1_706_TPlot.pdf
TRINITY_DN1550_c0_g1:4236	si_s434	TRINITY_DN1550_c0_g1	4223	4246	4236	-21.50	-14.30	0.665116279069767	5.5	1-9,4246-4238;10-14,4236-4232;15-21,4229-4223	x-x,4237-4237[BULt];x-x,4231-4230[BULt]	(((((((..(((((.(((((((((&)))))))))-)))))--)))))))	UGUAUAAGUUAUGUAAGUUAUUGU&ACAAUAAUU-ACAUA--UUAUAUA	2	0.962120194413448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN1550_c0_g1_4236_TPlot.pdf
TRINITY_DN1551_c0_g1:1164	si_s68	TRINITY_DN1551_c0_g1	1153	1173	1164	-23.10	-15.10	0.653679653679654	7.5	3-6,1171-1168;8-21,1166-1153	1-2,1173-1172[UP5];7-7,1167-1167[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AAAGAGAAAGAGUAUAAGUAU&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1551_c0_g1_1164_TPlot.pdf
TRINITY_DN1551_c0_g1:516	si_s26	TRINITY_DN1551_c0_g1	502	525	516	-26.70	-19.12	0.716104868913858	6.5	2-14,524-512;17-21,506-502	1-1,525-525[UP5];15-16,511-507[AILt]	(((((.....(((((((((((((.&.)))))))))))))---..)))))	GAAGACCCUCUAGUUGCAAUCAAA&AUUGAUUGCAACUA---AAUCUUU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN1551_c0_g1_516_TPlot.pdf
TRINITY_DN1551_c0_g1:517	si_s25	TRINITY_DN1551_c0_g1	506	526	517	-27.10	-18.20	0.671586715867159	9	3-15,524-512	1-2,526-525[UP5];16-21,511-506[UP3]	......(((((((((((((..&..)))))))))))))......	ACCCUCUAGUUGCAAUCAAAA&UAUUGAUUGCAACUAAAUCUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN1551_c0_g1_517_TPlot.pdf
TRINITY_DN1551_c0_g1:519	si_s23	TRINITY_DN1551_c0_g1	508	528	519	-27.00	-18.20	0.674074074074074	11	5-17,524-512	1-4,528-525[UP5];18-21,511-508[UP3]	....(((((((((((((....&....)))))))))))))....	CCUCUAGUUGCAAUCAAAAAA&UAUAUUGAUUGCAACUAAAUC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN1551_c0_g1_519_TPlot.pdf
TRINITY_DN1551_c0_g1:749	si_a500	TRINITY_DN1551_c0_g1	738	757	749	-34.40	-22.50	0.654069767441861	10.5	3-6,755-752;10-21,749-738	1-2,757-756[UP5];7-9,751-750[AILq]	((((((((((((..-((((..&..))))...))))))))))))	UCCGAGGAAGACUU-AGACAG&UCGUUUUUCGUCUUCCUUGGA	2	0.999999616366691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1551_c0_g1_749_TPlot.pdf
TRINITY_DN1551_c0_g1:750	si_a499	TRINITY_DN1551_c0_g1	739	759	750	-35.20	-22.90	0.650568181818182	10.5	1-3,759-757;4-7,755-752;11-21,749-739	x-x,756-756[BULt];8-10,751-750[AILq]	(((((((((((..-((((.(((&)))-))))...)))))))))))	CCGAGGAAGACUU-AGACAGGC&GUC-GUUUUUCGUCUUCCUUGG	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1551_c0_g1_750_TPlot.pdf
TRINITY_DN15528_c0_g1:504	si_s70	TRINITY_DN15528_c0_g1	493	513	504	-25.80	-17.70	0.686046511627907	6	2-6,512-508;8-11,506-503;13-21,501-493	1-1,513-513[UP5];7-7,507-507[SIL];12-12,502-502[SIL]	(((((((((.((((.(((((.&.))))).)))).)))))))))	GGAAAGAAACAAAAGAGGAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.99999999980162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN15528_c0_g1_504_TPlot.pdf
TRINITY_DN1554_c0_g1:954	si_s642	TRINITY_DN1554_c0_g1	943	963	954	-38.60	-26.20	0.678756476683938	8	1-12,963-952;14-15,950-949	13-13,951-951[SIL];16-21,948-943[UP3]	......((.((((((((((((&)))))))))))).))......	GAAACCUCAAGGGCAGACGCC&GGCGUUUGCCCUCGAUACAAU	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN1554_c0_g1_954_TPlot.pdf
TRINITY_DN1554_c0_g1:961	si_s635	TRINITY_DN1554_c0_g1	950	970	961	-39.80	-28.40	0.71356783919598	7	1-5,970-966;8-19,963-952	6-7,965-964[SIL];20-21,951-950[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	CAAGGGCAGACGCCAUCGAAG&UUUCGUAGGCGUUUGCCCUCG	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN1554_c0_g1_961_TPlot.pdf
TRINITY_DN1554_c0_g1:962	si_s634	TRINITY_DN1554_c0_g1	951	971	962	-38.30	-28.40	0.741514360313316	7.5	2-6,970-966;9-20,963-952	1-1,971-971[UP5];7-8,965-964[SIL];21-21,951-951[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	AAGGGCAGACGCCAUCGAAGU&UUUUCGUAGGCGUUUGCCCUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN1554_c0_g1_962_TPlot.pdf
TRINITY_DN1554_c0_g1:963	si_s633	TRINITY_DN1554_c0_g1	952	972	963	-37.90	-28.60	0.754617414248021	7.5	1-1,972-972;3-7,970-966;10-21,963-952	2-2,971-971[SIL];8-9,965-964[SIL]	((((((((((((..(((((.(&).)))))..))))))))))))	AGGGCAGACGCCAUCGAAGUG&CUUUUCGUAGGCGUUUGCCCU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN1554_c0_g1_963_TPlot.pdf
TRINITY_DN1554_c0_g1:964	si_s632	TRINITY_DN1554_c0_g1	953	974	964	-38.20	-28.30	0.740837696335078	8.5	1-3,974-972;4-8,970-966;11-21,963-953	x-x,971-971[BULt];9-10,965-964[SIL]	(((((((((((..(((((.(((&)))-)))))..)))))))))))	GGGCAGACGCCAUCGAAGUGGA&UCU-UUUCGUAGGCGUUUGCCC	0	0.0168662441540489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN1554_c0_g1_964_TPlot.pdf
TRINITY_DN15562_c0_g1:44	si_a627	TRINITY_DN15562_c0_g1	33	51	44	-29.50	-20.08	0.680677966101695	10.5	1-7,51-45;12-21,42-33	8-11,44-43[AILq]	((((((((((..--(((((((&)))))))....))))))))))	GAAAAAUCGGAA--GUACGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN15562_c0_g1_44_TPlot.pdf
TRINITY_DN15569_c0_g1:767	si_s492	TRINITY_DN15569_c0_g1	756	776	767	-20.10	-14.30	0.711442786069652	8	3-6,774-771;8-20,769-757	1-2,776-775[UP5];7-7,770-770[SIL];21-21,756-756[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AGUUUUGUUUAUAUAUGAGGC&UAUUUAAAUAUAAACAAAACA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN15569_c0_g1_767_TPlot.pdf
TRINITY_DN15569_c0_g1:768	si_s491	TRINITY_DN15569_c0_g1	757	777	768	-19.50	-13.80	0.707692307692308	9	4-7,774-771;9-21,769-757	1-3,777-775[UP5];8-8,770-770[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GUUUUGUUUAUAUAUGAGGCG&UUAUUUAAAUAUAAACAAAAC	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN15569_c0_g1_768_TPlot.pdf
TRINITY_DN1556_c0_g1:425	si_a407	TRINITY_DN1556_c0_g1	414	434	425	-19.80	-13.30	0.671717171717172	10	2-14,433-421	1-1,434-434[UP5];15-21,420-414[UP3]	.......(((((((((((((.&.))))))))))))).......	UAUUUGCUAUAGACGAAACAG&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1556_c0_g1_425_TPlot.pdf
TRINITY_DN1556_c0_g1:427	si_a405	TRINITY_DN1556_c0_g1	416	436	427	-19.80	-13.30	0.671717171717172	12	4-16,433-421	1-3,436-434[UP5];17-21,420-416[UP3]	.....(((((((((((((...&...))))))))))))).....	UUUGCUAUAGACGAAACAGAU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1556_c0_g1_427_TPlot.pdf
TRINITY_DN1556_c0_g1:446	si_s80	TRINITY_DN1556_c0_g1	434	455	446	-28.20	-21.20	0.75177304964539	7	1-10,455-446;11-18,444-437;20-21,435-434	x-x,445-445[BULt];19-19,436-436[SIL]	((.((((((((.((((((((((&))))))))))-)))))))).))	GAUGAAGAAAGAGGAGGAGGAA&UUUUUCUUUC-CUUUCUUCUUC	3	0.999999997855688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1556_c0_g1_446_TPlot.pdf
TRINITY_DN1556_c0_g1:447	si_s79	TRINITY_DN1556_c0_g1	435	456	447	-26.20	-20.50	0.782442748091603	8	1-11,456-446;12-19,444-437	x-x,445-445[BULt];20-21,436-435[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AUGAAGAAAGAGGAGGAGGAAA&UUUUUUCUUUC-CUUUCUUCUU	3	0.999999874559078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1556_c0_g1_447_TPlot.pdf
TRINITY_DN1556_c0_g1:448	si_s78	TRINITY_DN1556_c0_g1	436	457	448	-26.20	-20.60	0.786259541984733	8	2-12,456-446;13-20,444-437	1-1,457-457[UP5];x-x,445-445[BULt];21-21,436-436[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UGAAGAAAGAGGAGGAGGAAAC&UUUUUUUCUUUC-CUUUCUUCU	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1556_c0_g1_448_TPlot.pdf
TRINITY_DN1556_c0_g1:449	si_s77	TRINITY_DN1556_c0_g1	437	458	449	-25.50	-20.20	0.792156862745098	8	3-13,456-446;14-21,444-437	1-2,458-457[UP5];x-x,445-445[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GAAGAAAGAGGAGGAGGAAACA&UUUUUUUUCUUUC-CUUUCUUC	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1556_c0_g1_449_TPlot.pdf
TRINITY_DN1556_c0_g1:450	si_s76	TRINITY_DN1556_c0_g1	438	459	450	-23.60	-17.20	0.728813559322034	9.5	4-14,456-446;15-21,444-438	1-3,459-457[UP5];x-x,445-445[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AAGAAAGAGGAGGAGGAAACAC&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1556_c0_g1_450_TPlot.pdf
TRINITY_DN1556_c0_g1:451	si_s75	TRINITY_DN1556_c0_g1	439	460	451	-24.00	-16.30	0.679166666666667	11.5	5-15,456-446;16-21,444-439	1-4,460-457[UP5];x-x,445-445[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	AGAAAGAGGAGGAGGAAACACA&UAUUUUUUUUCUUUC-CUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1556_c0_g1_451_TPlot.pdf
TRINITY_DN1557_c0_g1:1229	si_s73	TRINITY_DN1557_c0_g1	1218	1238	1229	-24.00	-15.90	0.6625	8	2-11,1237-1228;13-18,1226-1221	1-1,1238-1238[UP5];12-12,1227-1227[SIL];19-21,1220-1218[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	CCUGGAAAGCAAAGAAAUGGU&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1557_c0_g1_1229_TPlot.pdf
TRINITY_DN1557_c0_g1:1230	si_s72	TRINITY_DN1557_c0_g1	1219	1239	1230	-24.10	-15.90	0.659751037344398	8	3-12,1237-1228;14-19,1226-1221	1-2,1239-1238[UP5];13-13,1227-1227[SIL];20-21,1220-1219[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	CUGGAAAGCAAAGAAAUGGUU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1557_c0_g1_1230_TPlot.pdf
TRINITY_DN1557_c0_g1:1231	si_s71	TRINITY_DN1557_c0_g1	1220	1240	1231	-25.70	-16.90	0.657587548638132	8	1-1,1240-1240;4-13,1237-1228;15-20,1226-1221	2-3,1239-1238[SIL];14-14,1227-1227[SIL];21-21,1220-1220[UP3]	.((((((.((((((((((..(&)..)))))))))).)))))).	UGGAAAGCAAAGAAAUGGUUG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1557_c0_g1_1231_TPlot.pdf
TRINITY_DN1557_c0_g1:777	si_a89	TRINITY_DN1557_c0_g1	766	786	777	-26.40	-17.40	0.659090909090909	14	7-19,780-768	1-6,786-781[UP5];20-21,767-766[UP3]	..(((((((((((((......&......)))))))))))))..	AGUGUUGCCUUUUCUGUUGAC&UUAUUAAGAAAAGGUAACGAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN1557_c0_g1_777_TPlot.pdf
TRINITY_DN1557_c0_g1:778	si_a88	TRINITY_DN1557_c0_g1	767	787	778	-26.40	-17.40	0.659090909090909	15	8-20,780-768	1-7,787-781[UP5];21-21,767-767[UP3]	.(((((((((((((.......&.......))))))))))))).	GUGUUGCCUUUUCUGUUGACA&AUUAUUAAGAAAAGGUAACGA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a88_TRINITY_DN1557_c0_g1_778_TPlot.pdf
TRINITY_DN15581_c1_g1:158	si_a398	TRINITY_DN15581_c1_g1	147	167	158	-22.40	-14.70	0.65625	5	1-6,167-162;9-21,159-147	7-8,161-160[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UAAACAAAAUAAUAAUAUAUU&AAUAUAGAAUUGUUUUGUUUA	2	0.9999995814442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN15581_c1_g1_158_TPlot.pdf
TRINITY_DN15588_c0_g1:849	si_s98	TRINITY_DN15588_c0_g1	839	858	849	-34.70	-23.20	0.668587896253602	10	4-13,855-846;15-19,845-841	1-3,858-856[UP5];14-14,x-x[BULq];20-21,840-839[UP3]	..(((((-((((((((((...&...)))))))))).)))))..	CCUCCAA-CCGGAGCGGAAUU&UUCUUCGCUUCGGAUUGGAAA	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN15588_c0_g1_849_TPlot.pdf
TRINITY_DN15589_c0_g1:45	si_s126	TRINITY_DN15589_c0_g1	29	54	45	-29.20	-20.50	0.702054794520548	9.5	1-7,54-48;9-14,46-41;15-21,35-29	8-8,47-47[SIL];x-x,40-36[BULt]	(((((((.....((((((.(((((((&))))))).))))))-----)))))))	GGUUGAUUGCACUCGACUGUUCUGUU&AAUAGAAGAGUUGA-----AUCAAUC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN15589_c0_g1_45_TPlot.pdf
TRINITY_DN1558_c0_g1:6306	si_a286	TRINITY_DN1558_c0_g1	6297	6315	6306	-28.30	-19.30	0.681978798586572	4.5	1-11,6315-6305;14-21,6304-6297	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	UUUUUUAG--CUAAGCGAUCU&AGAUCGCUUGGAUUUAAAAAA	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN1558_c0_g1_6306_TPlot.pdf
TRINITY_DN1558_c0_g1:6307	si_a285	TRINITY_DN1558_c0_g1	6298	6316	6307	-28.30	-18.80	0.664310954063604	4.5	2-12,6315-6305;15-21,6304-6298	1-1,6316-6316[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	UUUUUAG--CUAAGCGAUCUG&AAGAUCGCUUGGAUUUAAAAA	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN1558_c0_g1_6307_TPlot.pdf
TRINITY_DN15598_c0_g1:1881	si_a7	TRINITY_DN15598_c0_g1	1869	1890	1881	-29.10	-19.20	0.65979381443299	8	2-15,1889-1876;16-17,1874-1873	1-1,1890-1890[UP5];x-x,1875-1875[BULt];18-21,1872-1869[UP3]	....((.((((((((((((((.&.))))))))))))))-))....	AUCAAGAGCUUUCUCUUUGAUG&AAUUGAAGAGAAAGC-CUAUUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN15598_c0_g1_1881_TPlot.pdf
TRINITY_DN1559_c0_g1:639	si_a566	TRINITY_DN1559_c0_g1	627	649	639	-36.40	-23.70	0.651098901098901	8.5	1-3,649-647;4-7,645-642;9-15,640-634;17-20,631-628	x-x,646-646[BULt];8-8,641-641[SIL];16-16,633-632[AILt];21-21,627-627[UP3]	.((((..(((((((.((((.(((&)))-)))).)))))))-.)))).	UAGCGGAGCGAUUCUCGGGUGAG&CUC-CCCGUGAAUCGU-AUGUUU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN1559_c0_g1_639_TPlot.pdf
TRINITY_DN155_c0_g1:408	si_s209	TRINITY_DN155_c0_g1	397	418	408	-36.20	-24.20	0.668508287292818	5.5	1-8,418-411;9-15,409-403;17-17,401-401;19-20,399-398	x-x,410-410[BULt];16-16,402-402[SIL];18-18,400-400[SIL];21-21,397-397[UP3]	.((.(.(((((((.((((((((&))))))))-))))))).).)).	UGUAUGGAGCACAGACUGGUAC&GUACCAGU-UGUGUUCGAAACC	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN155_c0_g1_408_TPlot.pdf
TRINITY_DN15608_c0_g1:671	si_a498	TRINITY_DN15608_c0_g1	655	680	671	-33.50	-21.80	0.650746268656716	16.5	1-11,680-670;12-18,664-658	x-x,669-665[BULt];19-21,657-655[UP3]	...(((((((.....(((((((((((&)))))))))))-----)))))))...	CCUGGAGGACCAUGCGAGAGACGAUA&UGUCGUUUUUC-----GUCUUCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN15608_c0_g1_671_TPlot.pdf
TRINITY_DN15608_c0_g1:679	si_a490	TRINITY_DN15608_c0_g1	668	686	679	-28.10	-18.90	0.672597864768683	8.5	2-4,685-683;7-21,682-668	1-1,686-686[UP5];5-6,x-x[BULq]	(((((((((((((((--(((.&.)))..)))))))))))))))	GCGAGAGACGAUAUG--CUAG&AUAGAAUAUGUCGUUUUUCGU	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN15608_c0_g1_679_TPlot.pdf
TRINITY_DN1560_c0_g2:2920	si_s634	TRINITY_DN1560_c0_g2	2910	2929	2920	-38.30	-27.70	0.723237597911227	10.5	6-14,2924-2916;16-21,2915-2910	1-5,2929-2925[UP5];15-15,x-x[BULq]	((((((-(((((((((.....&.....))))))))).))))))	GGGGGC-AACGCCUACCAUGU&UUUUCGUAGGCGUUUGCCCUC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN1560_c0_g2_2920_TPlot.pdf
TRINITY_DN1560_c0_g2:2921	si_s633	TRINITY_DN1560_c0_g2	2911	2930	2921	-37.90	-25.40	0.670184696569921	12.5	7-15,2924-2916;17-21,2915-2911	1-6,2930-2925[UP5];16-16,x-x[BULq]	(((((-(((((((((......&......))))))))).)))))	GGGGC-AACGCCUACCAUGUG&CUUUUCGUAGGCGUUUGCCCU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN1560_c0_g2_2921_TPlot.pdf
TRINITY_DN15611_c0_g1:1301	si_a329	TRINITY_DN15611_c0_g1	1290	1313	1301	-29.60	-19.30	0.652027027027027	11	2-7,1312-1307;8-19,1303-1292	1-1,1313-1313[UP5];x-x,1306-1304[BULt];20-21,1291-1290[UP3]	..((((((((((((...((((((.&.))))))---))))))))))))..	GCGGACAAGGAAUACGCAAAGGAA&AUUUUUU---UAUUCCUUGUCCCG	2	0.999998779300891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN15611_c0_g1_1301_TPlot.pdf
TRINITY_DN15612_c0_g1:4951	si_s87	TRINITY_DN15612_c0_g1	4939	4960	4951	-32.90	-22.60	0.68693009118541	8	1-4,4960-4957;6-17,4955-4944;18-20,4942-4940	5-5,4956-4956[SIL];x-x,4943-4943[BULt];21-21,4939-4939[UP3]	.(((.((((((((((((.((((&)))).))))))))))))-))).	UGGCGGAAGAAGAAGGGCGGGG&UUCCUUUCUUCUUCUUC-GCUU	3	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN15612_c0_g1_4951_TPlot.pdf
TRINITY_DN15612_c0_g1:5524	si_a502	TRINITY_DN15612_c0_g1	5513	5533	5524	-32.10	-21.20	0.660436137071651	12	5-17,5529-5517	1-4,5533-5530[UP5];18-21,5516-5513[UP3]	....(((((((((((((....&....)))))))))))))....	CCAGCAAGGAAGACGAGUCAA&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999999814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN15612_c0_g1_5524_TPlot.pdf
TRINITY_DN15612_c0_g1:5946	si_s204	TRINITY_DN15612_c0_g1	5932	5954	5946	-36.30	-24.00	0.661157024793388	7	1-3,5954-5952;5-15,5951-5941;16-21,5937-5932	4-4,x-x[BULq];x-x,5940-5938[BULt]	((((((...(((((((((((-(((&))).)))))))))))---))))))	UGAACAUUUCGACUGGUAUA-UCC&GGAAUGUACCAGUUG---UGUUCG	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s204_TRINITY_DN15612_c0_g1_5946_TPlot.pdf
TRINITY_DN15612_c0_g1:5951	si_s199	TRINITY_DN15612_c0_g1	5940	5959	5951	-31.20	-21.70	0.69551282051282	8.5	3-8,5957-5952;10-20,5951-5941	1-2,5959-5958[UP5];9-9,x-x[BULq];21-21,5940-5940[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	UCGACUGGUAUA-UCCGAACU&AUUUUGGAAUGUACCAGUUGU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN15612_c0_g1_5951_TPlot.pdf
TRINITY_DN15612_c0_g1:5952	si_s198	TRINITY_DN15612_c0_g1	5941	5960	5952	-30.80	-21.50	0.698051948051948	9.5	4-9,5957-5952;11-21,5951-5941	1-3,5960-5958[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	CGACUGGUAUA-UCCGAACUG&UAUUUUGGAAUGUACCAGUUG	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN15612_c0_g1_5952_TPlot.pdf
TRINITY_DN15612_c0_g1:6117	si_a333	TRINITY_DN15612_c0_g1	6106	6127	6117	-30.60	-21.70	0.709150326797386	12	2-9,6126-6119;10-17,6117-6110	1-1,6127-6127[UP5];x-x,6118-6118[BULt];18-21,6109-6106[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	GUGGCGGGACGGCGGAGUGGAC&UUUUAUUCC-UUGUCCCGAAAA	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN15612_c0_g1_6117_TPlot.pdf
TRINITY_DN15612_c0_g1:6119	si_a332	TRINITY_DN15612_c0_g1	6107	6128	6119	-30.60	-21.70	0.709150326797386	13	3-10,6126-6119;11-18,6117-6110	1-2,6128-6127[UP5];x-x,6118-6118[BULt];19-21,6109-6107[UP3]	...((((((((.((((((((..&..))))))))-))))))))...	UGGCGGGACGGCGGAGUGGACU&UUUUUAUUCC-UUGUCCCGAAA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN15612_c0_g1_6119_TPlot.pdf
TRINITY_DN15612_c0_g1:6120	si_a331	TRINITY_DN15612_c0_g1	6108	6129	6120	-30.60	-21.70	0.709150326797386	13.5	4-11,6126-6119;12-19,6117-6110	1-3,6129-6127[UP5];x-x,6118-6118[BULt];20-21,6109-6108[UP3]	..((((((((.((((((((...&...))))))))-))))))))..	GGCGGGACGGCGGAGUGGACUC&UUUUUUAUUCC-UUGUCCCGAA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN15612_c0_g1_6120_TPlot.pdf
TRINITY_DN15612_c0_g1:6122	si_a329	TRINITY_DN15612_c0_g1	6110	6131	6122	-29.60	-21.50	0.726351351351351	14	6-13,6126-6119;14-21,6117-6110	1-5,6131-6127[UP5];x-x,6118-6118[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	CGGGACGGCGGAGUGGACUCGU&AUUUUUUUAUUCC-UUGUCCCG	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN15612_c0_g1_6122_TPlot.pdf
TRINITY_DN15612_c0_g1:6152	si_a142	TRINITY_DN15612_c0_g1	6141	6161	6152	-23.50	-16.20	0.68936170212766	15.5	7-19,6155-6143	1-6,6161-6156[UP5];20-21,6142-6141[UP3]	..(((((((((((((......&......)))))))))))))..	ACAGAGCAGCGACGACGGCUC&AAUUAAUCGUUGUUGUUUUAA	2	0.99998838640176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN15612_c0_g1_6152_TPlot.pdf
TRINITY_DN15612_c0_g1:6153	si_a141	TRINITY_DN15612_c0_g1	6142	6162	6153	-23.80	-16.20	0.680672268907563	16.5	8-20,6155-6143	1-7,6162-6156[UP5];21-21,6142-6142[UP3]	.(((((((((((((.......&.......))))))))))))).	CAGAGCAGCGACGACGGCUCG&UAAUUAAUCGUUGUUGUUUUA	4	0.999999994575038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN15612_c0_g1_6153_TPlot.pdf
TRINITY_DN15612_c0_g1:6172	si_a497	TRINITY_DN15612_c0_g1	6161	6181	6172	-32.00	-22.10	0.690625	10	1-6,6181-6176;8-9,6174-6173;11-20,6171-6162	7-7,6175-6175[SIL];10-10,6172-6172[SIL];21-21,6161-6161[UP3]	.((((((((((.((.((((((&)))))).)).)))))))))).	CGGGAAGGCGGUGAUUGGCAU&AUGUCGUUUUUCGUCUUCCUU	2	0.999995655412073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN15612_c0_g1_6172_TPlot.pdf
TRINITY_DN15612_c0_g1:6174	si_a495	TRINITY_DN15612_c0_g1	6163	6183	6174	-31.90	-21.40	0.670846394984326	10	2-8,6182-6176;10-11,6174-6173;13-21,6171-6163	1-1,6183-6183[UP5];9-9,6175-6175[SIL];12-12,6172-6172[SIL]	(((((((((.((.(((((((.&.))))))).)).)))))))))	GGAAGGCGGUGAUUGGCAUGA&AUAUGUCGUUUUUCGUCUUCC	2	0.999986002637681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN15612_c0_g1_6174_TPlot.pdf
TRINITY_DN15612_c0_g1:6175	si_a632	TRINITY_DN15612_c0_g1	6158	6184	6175	-26.10	-18.30	0.701149425287356	18	1-12,6184-6173;13-21,6166-6158	x-x,6172-6167[BULt]	(((((((((......((((((((((((&))))))))))))------)))))))))	GCUCGGGAAGGCGGUGAUUGGCAUGAU&AUUAUGUCGAUU------UUUUUGAGU	2	0.992853418057827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN15612_c0_g1_6175_TPlot.pdf
TRINITY_DN15612_c0_g1:6176	si_a631	TRINITY_DN15612_c0_g1	6159	6185	6176	-25.70	-18.00	0.700389105058366	11	1-13,6185-6173;14-21,6166-6159	x-x,6172-6167[BULt]	((((((((......(((((((((((((&)))))))))))))------))))))))	CUCGGGAAGGCGGUGAUUGGCAUGAUA&UAUUAUGUCGAUU------UUUUUGAG	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN15612_c0_g1_6176_TPlot.pdf
TRINITY_DN15612_c0_g1:6273	si_s377	TRINITY_DN15612_c0_g1	6261	6281	6273	-44.10	-29.90	0.678004535147392	8.5	1-4,6281-6278;6-10,6277-6273;11-21,6271-6261	5-5,x-x[BULq];x-x,6272-6272[BULt]	(((((((((((.(((((-((((&)))).)))))-)))))))))))	GUGAGGUGGGCAAUGCG-GUGG&UCGCUCGCGU-GUCCGCCUUAC	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN15612_c0_g1_6273_TPlot.pdf
TRINITY_DN15616_c0_g2:368	si_a512	TRINITY_DN15616_c0_g2	357	377	368	-37.80	-27.70	0.732804232804233	5	2-3,376-375;5-20,373-358	1-1,377-377[UP5];4-4,374-374[SIL];21-21,357-357[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	GCCGUCUUGCAUUCCAACGAU&UUCCUUGGAAUGUAAGGCGGA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN15616_c0_g2_368_TPlot.pdf
TRINITY_DN15619_c0_g1:2446	si_a401	TRINITY_DN15619_c0_g1	2435	2455	2446	-22.60	-15.50	0.685840707964602	11	4-13,2452-2443;15-19,2441-2437	1-3,2455-2453[UP5];14-14,2442-2442[SIL];20-21,2436-2435[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	UAGUAGAGAAAGCAGUUCAAA&AUAGAAUUGUUUUGUUUAUAU	4	0.999999577348245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN15619_c0_g1_2446_TPlot.pdf
TRINITY_DN15619_c0_g1:2669	si_s77	TRINITY_DN15619_c0_g1	2657	2678	2669	-25.50	-18.00	0.705882352941177	6.5	3-13,2676-2666;14-20,2664-2658	1-2,2678-2677[UP5];x-x,2665-2665[BULt];21-21,2657-2657[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	CAAGAAGGAGAAAGAGAAAACA&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN15619_c0_g1_2669_TPlot.pdf
TRINITY_DN15619_c0_g1:484	si_s899	TRINITY_DN15619_c0_g1	474	493	484	-28.30	-19.90	0.703180212014134	8.5	1-11,493-483;14-17,481-478	12-13,482-482[AILq];18-21,477-474[UP3]	....((((.-(((((((((((&)))))))))))..))))....	AAAAGAGAG-GAAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN15619_c0_g1_484_TPlot.pdf
TRINITY_DN1561_c0_g1:785	si_a323	TRINITY_DN1561_c0_g1	773	799	785	-26.80	-18.00	0.671641791044776	14	1-4,799-796;5-17,790-778;18-21,776-773	x-x,795-791[BULt];x-x,777-777[BULt]	((((.(((((((((((((.....((((&))))-----)))))))))))))-))))	GAGGCGGUAGAGAAAUCAAGAGAUGGA&UCCA-----UGAUUUUUUUAUU-CCUU	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1561_c0_g1_785_TPlot.pdf
TRINITY_DN1561_c0_g1:789	si_a319	TRINITY_DN1561_c0_g1	778	799	789	-22.40	-15.30	0.683035714285714	8	1-6,799-794;7-7,792-792;9-21,790-778	x-x,793-793[BULt];8-8,791-791[SIL]	(((((((((((((.(.((((((&))))))-).)))))))))))))	GGUAGAGAAAUCAAGAGAUGGA&UUUAUC-CAUGAUUUUUUUAUU	4	0.999999999896927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1561_c0_g1_789_TPlot.pdf
TRINITY_DN15625_c0_g1:102	si_s433	TRINITY_DN15625_c0_g1	91	111	102	-21.10	-13.90	0.658767772511848	7	2-3,110-109;5-15,107-97;17-21,95-91	1-1,111-111[UP5];4-4,108-108[SIL];16-16,96-96[SIL]	(((((.(((((((((((.((.&.)).))))))))))).)))))	GUGUAUUAUGUGGUUAUCGUC&AACAAUAAUUACAUAUUAUAU	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN15625_c0_g1_102_TPlot.pdf
TRINITY_DN15629_c0_g1:3411	si_s86	TRINITY_DN15629_c0_g1	3397	3420	3411	-32.90	-21.50	0.653495440729483	9	1-10,3420-3411;11-12,3408-3407;14-17,3405-3402;18-21,3400-3397	x-x,3410-3409[BULt];13-13,3406-3406[SIL];x-x,3401-3401[BULt]	((((.((((.((..((((((((((&))))))))))--)).))))-))))	GGCGUGAGAUGACCAGAGAGGAGA&UUUCCUUUCU--UCUUCUU-CGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN15629_c0_g1_3411_TPlot.pdf
TRINITY_DN1562_c0_g1:1296	si_s91	TRINITY_DN1562_c0_g1	1284	1305	1296	-34.70	-25.60	0.737752161383285	7	3-4,1303-1302;6-14,1300-1292;15-21,1290-1284	1-2,1305-1304[UP5];5-5,1301-1301[SIL];x-x,1291-1291[BULt]	(((((((.(((((((((.((..&..)).)))))))))-)))))))	UCCGAAGACGGAGAAGACGACG&UUUCUUCUUCUUCG-CUUCGGA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN1562_c0_g1_1296_TPlot.pdf
TRINITY_DN1562_c0_g1:1315	si_s83	TRINITY_DN1562_c0_g1	1305	1324	1315	-30.90	-24.10	0.779935275080906	5	1-12,1324-1313;15-21,1311-1305	13-14,1312-1312[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	GAAGAAGC-GGAAGGAGAGGA&UUCUUUCCUUUCUUCUUCUUC	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1562_c0_g1_1315_TPlot.pdf
TRINITY_DN1562_c0_g1:1316	si_s78	TRINITY_DN1562_c0_g1	1304	1325	1316	-26.20	-21.60	0.824427480916031	7	1-13,1325-1313;14-20,1311-1305	x-x,1312-1312[BULt];21-21,1304-1304[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	CGAAGAAGCGGAAGGAGAGGAG&UUUUUUUCUUUCC-UUUCUUCU	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1562_c0_g1_1316_TPlot.pdf
TRINITY_DN15630_c0_g2:523	si_a217	TRINITY_DN15630_c0_g2	512	533	523	-27.00	-17.90	0.662962962962963	8	2-8,532-526;9-18,524-515	1-1,533-533[UP5];x-x,525-525[BULt];19-21,514-512[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	GUCAACAUGAGUUAUGGUUAGG&ACUAAUUA-AACUCAUGUUUCU	0	0.035862812008305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a217_TRINITY_DN15630_c0_g2_523_TPlot.pdf
TRINITY_DN15632_c0_g1:409	si_a415	TRINITY_DN15632_c0_g1	398	418	409	-18.10	-12.50	0.69060773480663	10	4-19,415-400	1-3,418-416[UP5];20-21,399-398[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGUAUUUGUUUGGAUAUUCU&UUUAUAUUUAAAUAAAUAUAG	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN15632_c0_g1_409_TPlot.pdf
TRINITY_DN15632_c0_g1:414	si_a410	TRINITY_DN15632_c0_g1	403	424	414	-17.80	-12.10	0.679775280898876	8.5	1-6,424-419;9-21,415-403	7-8,418-416[AILt]	(((((((((((((...((((((&))))))-..)))))))))))))	UUUGUUUGGAUAUUCUACAGAA&UUUUGU-UUAUAUUUAAAUAAA	3	0.999999999878981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN15632_c0_g1_414_TPlot.pdf
TRINITY_DN1563_c0_g1:1323	si_a341	TRINITY_DN1563_c0_g1	1312	1332	1323	-27.80	-18.60	0.669064748201439	9	3-10,1330-1323;13-21,1320-1312	1-2,1332-1331[UP5];11-12,1322-1321[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	AAUUGAUGUCAUUGGGACACA&CUUGUCCCGAAAAUAUUAAUU	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN1563_c0_g1_1323_TPlot.pdf
TRINITY_DN15645_c0_g1:203	si_s85	TRINITY_DN15645_c0_g1	192	218	203	-33.80	-26.40	0.781065088757396	16	1-8,218-211;9-19,204-194;21-21,192-192	x-x,210-205[BULt];20-20,193-193[SIL]	(.(((((((((((......((((((((&))))))))------))))))))))).)	GGGAAGAAGGAGAUAGGAGGAGGAGAG&CUUUCCUU------UCUUCUUCUUCGC	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN15645_c0_g1_203_TPlot.pdf
TRINITY_DN1564_c0_g1:2276	si_s69	TRINITY_DN1564_c0_g1	2265	2285	2276	-23.40	-15.80	0.675213675213675	7	3-13,2283-2273;15-18,2271-2268;20-21,2266-2265	1-2,2285-2284[UP5];14-14,2272-2272[SIL];19-19,2267-2267[SIL]	((.((((.(((((((((((..&..))))))))))).)))).))	GAUGGAAUGAAAAUAGGAGAC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1564_c0_g1_2276_TPlot.pdf
TRINITY_DN1564_c0_g1:458	si_a760	TRINITY_DN1564_c0_g1	449	467	458	-31.10	-21.70	0.697749196141479	3.5	1-14,467-454;17-20,453-450	15-16,x-x[BULq];21-21,449-449[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	UUCAG--AAAAACCCAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1564_c0_g1_458_TPlot.pdf
TRINITY_DN1565_c0_g1:3183	si_s872	TRINITY_DN1565_c0_g1	3172	3192	3183	-30.70	-20.70	0.674267100977199	11	2-11,3191-3182;13-15,3180-3178	1-1,3192-3192[UP5];12-12,3181-3181[SIL];16-21,3177-3172[UP3]	......(((.((((((((((.&.)))))))))).)))......	AAGGGGAGUACUGAGGCCGGG&ACCGGUCUUAGAACUAAAAAU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN1565_c0_g1_3183_TPlot.pdf
TRINITY_DN1565_c0_g1:3184	si_s871	TRINITY_DN1565_c0_g1	3173	3193	3184	-31.00	-20.70	0.667741935483871	11	3-12,3191-3182;14-16,3180-3178	1-2,3193-3192[UP5];13-13,3181-3181[SIL];17-21,3177-3173[UP3]	.....(((.((((((((((..&..)))))))))).))).....	AGGGGAGUACUGAGGCCGGGA&UACCGGUCUUAGAACUAAAAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN1565_c0_g1_3184_TPlot.pdf
TRINITY_DN15664_c1_g1:115	si_s814	TRINITY_DN15664_c1_g1	104	124	115	-26.60	-17.70	0.665413533834586	9	1-13,124-112	14-21,111-104[UP3]	........(((((((((((((&)))))))))))))........	UGAUAAGGAAGAGAAGGUAAC&GUUACCUUUUCUUAAUAAUGA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN15664_c1_g1_115_TPlot.pdf
TRINITY_DN15664_c1_g1:117	si_s812	TRINITY_DN15664_c1_g1	106	126	117	-26.40	-18.10	0.685606060606061	10	3-15,124-112	1-2,126-125[UP5];16-21,111-106[UP3]	......(((((((((((((..&..)))))))))))))......	AUAAGGAAGAGAAGGUAACUC&UCGUUACCUUUUCUUAAUAAU	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN15664_c1_g1_117_TPlot.pdf
TRINITY_DN15664_c1_g1:118	si_s811	TRINITY_DN15664_c1_g1	107	127	118	-26.40	-18.10	0.685606060606061	11	4-16,124-112	1-3,127-125[UP5];17-21,111-107[UP3]	.....(((((((((((((...&...))))))))))))).....	UAAGGAAGAGAAGGUAACUCA&UUCGUUACCUUUUCUUAAUAA	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN15664_c1_g1_118_TPlot.pdf
TRINITY_DN15664_c1_g1:247	si_a355	TRINITY_DN15664_c1_g1	237	256	247	-26.80	-17.80	0.664179104477612	9	1-3,256-254;6-11,251-246;14-21,244-237	4-5,253-252[SIL];12-13,245-245[AILq]	((((((((.-((((((..(((&)))..))))))..))))))))	UCCGAUCAC-GUAGAAGAGAU&AUUAAUUCUAUUUUGAUCGGA	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN15664_c1_g1_247_TPlot.pdf
TRINITY_DN15664_c1_g1:376	si_s93	TRINITY_DN15664_c1_g1	366	385	376	-34.80	-23.60	0.67816091954023	4	1-14,385-372;17-21,370-366	15-16,371-371[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	AGUUCU-AGUGAAGAAGAAGA&UCUUCUUCUUCGCUUCGGAUU	4	0.999999990527863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN15664_c1_g1_376_TPlot.pdf
TRINITY_DN15664_c1_g1:377	si_s92	TRINITY_DN15664_c1_g1	367	386	377	-34.90	-23.20	0.664756446991404	4	1-15,386-372;18-21,370-367	16-17,371-371[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	GUUCU-AGUGAAGAAGAAGAG&UUCUUCUUCUUCGCUUCGGAU	3	0.999999999999134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN15664_c1_g1_377_TPlot.pdf
TRINITY_DN15664_c1_g1:380	si_s89	TRINITY_DN15664_c1_g1	369	391	380	-35.30	-23.70	0.671388101983003	7.5	1-4,391-388;5-18,385-372	x-x,387-386[BULt];19-21,371-369[UP3]	...((((((((((((((..((((&))))--))))))))))))))...	UCUAGUGAAGAAGAAGAGGAAGG&CCUU--UCUUCUUCUUCGCUUCG	2	0.999999978087156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN15664_c1_g1_380_TPlot.pdf
TRINITY_DN15664_c1_g1:381	si_s88	TRINITY_DN15664_c1_g1	370	392	381	-34.80	-23.70	0.681034482758621	7.5	2-5,391-388;6-19,385-372	1-1,392-392[UP5];x-x,387-386[BULt];20-21,371-370[UP3]	..((((((((((((((..((((.&.))))--))))))))))))))..	CUAGUGAAGAAGAAGAGGAAGGU&UCCUU--UCUUCUUCUUCGCUUC	4	0.999999999994615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN15664_c1_g1_381_TPlot.pdf
TRINITY_DN15664_c1_g1:382	si_s87	TRINITY_DN15664_c1_g1	371	389	382	-32.90	-24.10	0.732522796352584	5.5	1-4,389-386;7-20,385-372	5-6,x-x[BULq];21-21,371-371[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	UAGUGAAGAAGAAGA--GGAA&UUCCUUUCUUCUUCUUCGCUU	2	0.999361043358898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN15664_c1_g1_382_TPlot.pdf
TRINITY_DN15664_c1_g1:383	si_s86	TRINITY_DN15664_c1_g1	372	390	383	-32.90	-24.50	0.74468085106383	5	1-5,390-386;8-21,385-372	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	AGUGAAGAAGAAGA--GGAAG&UUUCCUUUCUUCUUCUUCGCU	0	0.199991139751791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN15664_c1_g1_383_TPlot.pdf
TRINITY_DN15664_c1_g1:384	si_s85	TRINITY_DN15664_c1_g1	373	391	384	-33.80	-26.10	0.772189349112426	5.5	1-6,391-386;9-21,385-373	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	GUGAAGAAGAAGA--GGAAGG&CUUUCCUUUCUUCUUCUUCGC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN15664_c1_g1_384_TPlot.pdf
TRINITY_DN15664_c1_g1:385	si_s84	TRINITY_DN15664_c1_g1	374	392	385	-32.30	-22.70	0.702786377708978	6.5	2-7,391-386;10-21,385-374	1-1,392-392[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	UGAAGAAGAAGA--GGAAGGU&UCUUUCCUUUCUUCUUCUUCG	2	0.999999071691847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN15664_c1_g1_385_TPlot.pdf
TRINITY_DN15664_c1_g1:386	si_s83	TRINITY_DN15664_c1_g1	375	393	386	-30.90	-22.00	0.711974110032362	8	3-8,391-386;11-21,385-375	1-2,393-392[UP5];9-10,x-x[BULq]	(((((((((((--((((((..&..))))))..)))))))))))	GAAGAAGAAGA--GGAAGGUC&UUCUUUCCUUUCUUCUUCUUC	2	0.999999966543637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN15664_c1_g1_386_TPlot.pdf
TRINITY_DN15664_c1_g1:387	si_s80	TRINITY_DN15664_c1_g1	375	396	387	-28.20	-20.10	0.712765957446809	11.5	6-14,391-383;15-21,381-375	1-5,396-392[UP5];x-x,382-382[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	GAAGAAGAAGAGGAAGGUCAGG&UUUUUCUUUCCUUU-CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN15664_c1_g1_387_TPlot.pdf
TRINITY_DN15664_c1_g1:388	si_s79	TRINITY_DN15664_c1_g1	376	397	388	-26.20	-17.10	0.652671755725191	13.5	7-15,391-383;16-21,381-376	1-6,397-392[UP5];x-x,382-382[BULt]	((((((.(((((((((......&......)))))))))-))))))	AAGAAGAAGAGGAAGGUCAGGC&UUUUUUCUUUCCUUU-CUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15664_c1_g1_388_TPlot.pdf
TRINITY_DN15664_c1_g1:392	si_a494	TRINITY_DN15664_c1_g1	381	402	392	-29.50	-19.40	0.657627118644068	10	1-8,402-395;11-15,391-387;17-21,385-381	9-10,394-392[AILt];16-16,386-386[SIL]	(((((.(((((...((((((((&))))))))-..))))).)))))	GAAGAGGAAGGUCAGGCAUAUU&AAUAUGUC-GUUUUUCGUCUUC	4	0.999999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN15664_c1_g1_392_TPlot.pdf
TRINITY_DN15664_c1_g1:397	si_a628	TRINITY_DN15664_c1_g1	385	406	397	-27.10	-19.10	0.70479704797048	8	1-5,406-402;7-12,400-395;13-21,393-385	6-6,401-401[SIL];x-x,394-394[BULt]	(((((((((.((((((.(((((&))))).))))))-)))))))))	AGGAAGGUCAGGCAUAUUAUGC&GCGUAUUAUGUC-GAUUUUUUU	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN15664_c1_g1_397_TPlot.pdf
TRINITY_DN15664_c1_g1:951	si_a868	TRINITY_DN15664_c1_g1	940	960	951	-24.80	-17.30	0.69758064516129	16.5	9-20,952-941	1-8,960-953[UP5];21-21,940-940[UP3]	.((((((((((((........&........)))))))))))).	AGCAGCUAAAUCUAGACAAUU&AUUAUUAAAGAUUUAGUUGCA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN15664_c1_g1_951_TPlot.pdf
TRINITY_DN15664_c1_g1:952	si_a867	TRINITY_DN15664_c1_g1	941	961	952	-24.10	-16.80	0.697095435684647	17.5	10-21,952-941	1-9,961-953[UP5]	((((((((((((.........&.........))))))))))))	GCAGCUAAAUCUAGACAAUUC&AAUUAUUAAAGAUUUAGUUGC	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN15664_c1_g1_952_TPlot.pdf
TRINITY_DN1566_c0_g1:1711	si_a476	TRINITY_DN1566_c0_g1	1700	1721	1711	-22.90	-15.00	0.655021834061135	6.5	1-6,1721-1716;7-17,1714-1704	x-x,1715-1715[BULt];18-21,1703-1700[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	GUAUUAUGUAACAAUAAAUUAC&GUAAUU-AUUGUUAUAUAGAAU	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN1566_c0_g1_1711_TPlot.pdf
TRINITY_DN1566_c0_g1:1712	si_a475	TRINITY_DN1566_c0_g1	1701	1722	1712	-23.50	-15.80	0.672340425531915	5.5	1-7,1722-1716;8-18,1714-1704	x-x,1715-1715[BULt];19-21,1703-1701[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	UAUUAUGUAACAAUAAAUUACA&UGUAAUU-AUUGUUAUAUAGAA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN1566_c0_g1_1712_TPlot.pdf
TRINITY_DN1566_c0_g1:1713	si_a474	TRINITY_DN1566_c0_g1	1702	1723	1713	-23.60	-17.10	0.724576271186441	4.5	1-8,1723-1716;9-19,1714-1704	x-x,1715-1715[BULt];20-21,1703-1702[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	AUUAUGUAACAAUAAAUUACAU&AUGUAAUU-AUUGUUAUAUAGA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN1566_c0_g1_1713_TPlot.pdf
TRINITY_DN1566_c0_g1:1714	si_a473	TRINITY_DN1566_c0_g1	1703	1724	1714	-23.00	-17.60	0.765217391304348	4	1-9,1724-1716;10-20,1714-1704	x-x,1715-1715[BULt];21-21,1703-1703[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	UUAUGUAACAAUAAAUUACAUG&UAUGUAAUU-AUUGUUAUAUAG	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN1566_c0_g1_1714_TPlot.pdf
TRINITY_DN1566_c0_g1:1716	si_a472	TRINITY_DN1566_c0_g1	1704	1725	1716	-21.50	-17.30	0.804651162790698	4.5	2-10,1724-1716;11-21,1714-1704	1-1,1725-1725[UP5];x-x,1715-1715[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	UAUGUAACAAUAAAUUACAUGA&AUAUGUAAUU-AUUGUUAUAUA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1566_c0_g1_1716_TPlot.pdf
TRINITY_DN1566_c0_g1:1717	si_a471	TRINITY_DN1566_c0_g1	1705	1726	1717	-21.10	-15.80	0.748815165876777	6.5	3-11,1724-1716;12-21,1714-1705	1-2,1726-1725[UP5];x-x,1715-1715[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	AUGUAACAAUAAAUUACAUGAU&AAUAUGUAAUU-AUUGUUAUAU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN1566_c0_g1_1717_TPlot.pdf
TRINITY_DN1566_c0_g1:1718	si_a470	TRINITY_DN1566_c0_g1	1706	1727	1718	-21.30	-14.80	0.694835680751174	8.5	4-12,1724-1716;13-21,1714-1706	1-3,1727-1725[UP5];x-x,1715-1715[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	UGUAACAAUAAAUUACAUGAUA&UAAUAUGUAAUU-AUUGUUAUA	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN1566_c0_g1_1718_TPlot.pdf
TRINITY_DN1567_c0_g1:3959	si_a832	TRINITY_DN1567_c0_g1	3948	3968	3959	-23.10	-15.10	0.653679653679654	7.5	4-16,3965-3953;18-21,3951-3948	1-3,3968-3966[UP5];17-17,3952-3952[SIL]	((((.(((((((((((((...&...))))))))))))).))))	CAGCCUCUAUUUUUUUUUGAC&AAAGAAAAAAAAUAGAAGUUG	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a832_TRINITY_DN1567_c0_g1_3959_TPlot.pdf
TRINITY_DN1569_c0_g1:399	si_s656	TRINITY_DN1569_c0_g1	388	415	399	-35.20	-22.90	0.650568181818182	18.5	1-9,415-407;10-19,399-390	x-x,406-400[BULt];20-21,389-388[UP3]	..((((((((((.......(((((((((&)))))))))-------))))))))))..	CUUUCGAUUCCCGUUUAGUCGGUUGUGU&AUACAAUCG-------GGGGAUCGAAUU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s656_TRINITY_DN1569_c0_g1_399_TPlot.pdf
TRINITY_DN1569_c0_g1:413	si_a202	TRINITY_DN1569_c0_g1	401	422	413	-27.00	-18.40	0.681481481481481	6.5	1-5,422-418;7-10,416-413;11-20,411-402	6-6,417-417[SIL];x-x,412-412[BULt];21-21,401-401[UP3]	.((((((((((.((((.(((((&))))).))))-)))))))))).	UUUAGUCGGUUGUGUUUGUGAA&UUCACUAAUA-AAUCGACUAAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN1569_c0_g1_413_TPlot.pdf
TRINITY_DN1569_c0_g1:851	si_a787	TRINITY_DN1569_c0_g1	833	860	851	-26.30	-17.70	0.673003802281369	11.5	2-16,859-845;17-21,837-833	1-1,860-860[UP5];x-x,844-838[BULt]	(((((.......(((((((((((((((.&.)))))))))))))))-------)))))	UGGAAUCAUUUUAGUAGAGAAAUGGGAU&CUUCUAUUUUUCUAUU-------UUCCA	4	0.999999999999227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1569_c0_g1_851_TPlot.pdf
TRINITY_DN156_c0_g1:9077	si_s567	TRINITY_DN156_c0_g1	9066	9086	9077	-30.60	-20.80	0.679738562091503	12	3-15,9084-9072	1-2,9086-9085[UP5];16-21,9071-9066[UP3]	......(((((((((((((..&..)))))))))))))......	AGAUCCUCCUUGUCCUGGGCA&UUUUCGGGACAAGGAAUAAAA	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN156_c0_g1_9077_TPlot.pdf
TRINITY_DN156_c0_g1:9121	si_s508	TRINITY_DN156_c0_g1	9110	9132	9121	-22.80	-15.90	0.697368421052632	12	3-7,9130-9126;8-18,9123-9113	1-2,9132-9131[UP5];x-x,9125-9124[BULt];19-21,9112-9110[UP3]	...(((((((((((..(((((..&..)))))--)))))))))))...	GUGGAGAGUAUAGAGGGUUGUGU&AAACAAU--UCUAUAUUCUUAAU	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN156_c0_g1_9121_TPlot.pdf
TRINITY_DN156_c0_g1:9124	si_s505	TRINITY_DN156_c0_g1	9113	9132	9124	-24.70	-16.30	0.659919028340081	8	1-3,9132-9130;5-7,9128-9126;10-21,9124-9113	4-4,9129-9129[SIL];8-9,9125-9125[AILq]	((((((((((((.-(((.(((&))).)))..))))))))))))	GAGAGUAUAGAGG-GUUGUGU&ACAAAACAAUUCUAUAUUCUU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN156_c0_g1_9124_TPlot.pdf
TRINITY_DN15708_c0_g1:6538	si_s383	TRINITY_DN15708_c0_g1	6529	6547	6538	-40.90	-29.60	0.723716381418093	6.5	1-13,6547-6535;17-20,6533-6530	14-16,6534-6534[AILq];21-21,6529-6529[UP3]	.((((.--(((((((((((((&)))))))))))))...)))).	GGGGAC--AGGGCGGACGCGC&GCGUGUCCGCCUUACAUUCCA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s383_TRINITY_DN15708_c0_g1_6538_TPlot.pdf
TRINITY_DN15708_c0_g1:792	si_s508	TRINITY_DN15708_c0_g1	781	801	792	-22.80	-15.40	0.675438596491228	9	3-5,799-797;7-18,795-784	1-2,801-800[UP5];6-6,796-796[SIL];19-21,783-781[UP3]	...((((((((((((.(((..&..))).))))))))))))...	UCCAAGAAUAUAGAGAUGUGG&AAACAAUUCUAUAUUCUUAAU	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN15708_c0_g1_792_TPlot.pdf
TRINITY_DN1570_c0_g1:4363	si_a576	TRINITY_DN1570_c0_g1	4351	4372	4363	-28.70	-18.90	0.658536585365854	9.5	1-13,4372-4360;14-16,4358-4356	x-x,4359-4359[BULt];17-21,4355-4351[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	ACGGAGUUCGCGAGCAUGCGAU&AUCGUAUGUUUGU-AACAAGAA	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN1570_c0_g1_4363_TPlot.pdf
TRINITY_DN1570_c0_g1:4364	si_a575	TRINITY_DN1570_c0_g1	4352	4373	4364	-28.60	-19.20	0.671328671328671	9.5	2-14,4372-4360;15-17,4358-4356	1-1,4373-4373[UP5];x-x,4359-4359[BULt];18-21,4355-4352[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	CGGAGUUCGCGAGCAUGCGAUG&AAUCGUAUGUUUGU-AACAAGA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN1570_c0_g1_4364_TPlot.pdf
TRINITY_DN1570_c0_g1:4366	si_a573	TRINITY_DN1570_c0_g1	4354	4375	4366	-28.70	-19.20	0.668989547038327	11	4-16,4372-4360;17-19,4358-4356	1-3,4375-4373[UP5];x-x,4359-4359[BULt];20-21,4355-4354[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	GAGUUCGCGAGCAUGCGAUGUG&UGAAUCGUAUGUUUGU-AACAA	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN1570_c0_g1_4366_TPlot.pdf
TRINITY_DN1570_c0_g1:4631	si_s639	TRINITY_DN1570_c0_g1	4618	4640	4631	-40.60	-29.00	0.714285714285714	11	1-12,4640-4629;13-17,4626-4622	x-x,4628-4627[BULt];18-21,4621-4618[UP3]	....(((((..((((((((((((&))))))))))))--)))))....	GCCGCGAGGUUGCGGGCGCCUAC&GUAGGCGUUUGC--CCUCGAUAC	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN1570_c0_g1_4631_TPlot.pdf
TRINITY_DN1570_c0_g1:4632	si_s638	TRINITY_DN1570_c0_g1	4619	4641	4632	-40.30	-30.50	0.75682382133995	8	1-13,4641-4629;14-18,4626-4622	x-x,4628-4627[BULt];19-21,4621-4619[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	CCGCGAGGUUGCGGGCGCCUACG&CGUAGGCGUUUGC--CCUCGAUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN1570_c0_g1_4632_TPlot.pdf
TRINITY_DN1570_c0_g1:4633	si_s637	TRINITY_DN1570_c0_g1	4620	4642	4633	-40.90	-30.50	0.745721271393643	8	2-14,4641-4629;15-19,4626-4622	1-1,4642-4642[UP5];x-x,4628-4627[BULt];20-21,4621-4620[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	CGCGAGGUUGCGGGCGCCUACGC&UCGUAGGCGUUUGC--CCUCGAU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN1570_c0_g1_4633_TPlot.pdf
TRINITY_DN1570_c0_g1:4634	si_s636	TRINITY_DN1570_c0_g1	4621	4643	4634	-40.80	-30.50	0.747549019607843	8.5	3-15,4641-4629;16-20,4626-4622	1-2,4643-4642[UP5];x-x,4628-4627[BULt];21-21,4621-4621[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	GCGAGGUUGCGGGCGCCUACGCC&UUCGUAGGCGUUUGC--CCUCGA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN1570_c0_g1_4634_TPlot.pdf
TRINITY_DN1570_c0_g1:5364	si_s795	TRINITY_DN1570_c0_g1	5350	5374	5364	-30.30	-20.90	0.68976897689769	10.5	1-8,5374-5367;9-11,5365-5363;12-21,5359-5350	x-x,5366-5366[BULt];x-x,5362-5360[BULt]	((((((((((...(((.((((((((&))))))))-)))---))))))))))	AUGAAGGUGAUGAGAUGACGAGCUU&AAGCUCGU-AUU---UUAUCUUCGU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN1570_c0_g1_5364_TPlot.pdf
TRINITY_DN1570_c0_g1:5372	si_s788	TRINITY_DN1570_c0_g1	5360	5381	5372	-26.20	-17.50	0.66793893129771	13	7-15,5375-5367;16-21,5365-5360	1-6,5381-5376[UP5];x-x,5366-5366[BULt]	((((((.(((((((((......&......)))))))))-))))))	UGAGAUGACGAGCUUGCGCCUG&AUAAAACAAGCUCGU-AUUUUA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN1570_c0_g1_5372_TPlot.pdf
TRINITY_DN15710_c0_g1:854	si_s208	TRINITY_DN15710_c0_g1	843	863	854	-34.50	-23.60	0.684057971014493	8.5	2-7,862-857;9-18,855-846	1-1,863-863[UP5];8-8,856-856[SIL];19-21,845-843[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	GAAUCGAGCAUGAGUGGUACC&UGUACCAGUUGUGUUCGAAAC	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN15710_c0_g1_854_TPlot.pdf
TRINITY_DN15722_c0_g1:54	si_s78	TRINITY_DN15722_c0_g1	41	63	54	-26.20	-18.60	0.709923664122137	8	2-13,62-51;15-20,47-42	1-1,63-63[UP5];14-14,50-48[AILt];21-21,41-41[UP3]	.((((((...((((((((((((.&.))))))))))))--.)))))).	UGAAGAACUUGGAAGGAAGAGAU&UUUUUUUCUUUCC--UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15722_c0_g1_54_TPlot.pdf
TRINITY_DN15722_c0_g2:1155	si_a785	TRINITY_DN15722_c0_g2	1143	1166	1155	-25.90	-18.90	0.72972972972973	8	1-7,1166-1160;8-14,1157-1151;15-21,1149-1143	x-x,1159-1158[BULt];x-x,1150-1150[BULt]	(((((((.(((((((..(((((((&)))))))--)))))))-)))))))	GAAGAUAUGGAAGAUGAGGAAGAG&CUCUUCU--AUUUUUC-UAUUUUC	3	0.999989219606595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN15722_c0_g2_1155_TPlot.pdf
TRINITY_DN15722_c0_g2:1162	si_a787	TRINITY_DN15722_c0_g2	1150	1170	1162	-26.30	-18.30	0.695817490494297	6.5	1-5,1170-1166;7-13,1165-1159;14-21,1157-1150	6-6,x-x[BULq];x-x,1158-1158[BULt]	((((((((.(((((((-(((((&))))).)))))))-))))))))	UGGAAGAUGAGGAAGA-GGAAG&CUUCUAUUUUUCU-AUUUUCCA	2	0.999966962173071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN15722_c0_g2_1162_TPlot.pdf
TRINITY_DN15722_c0_g2:1163	si_a786	TRINITY_DN15722_c0_g2	1151	1171	1163	-26.60	-18.50	0.695488721804511	6.5	1-6,1171-1166;8-14,1165-1159;15-21,1157-1151	7-7,x-x[BULq];x-x,1158-1158[BULt]	(((((((.(((((((-((((((&)))))).)))))))-)))))))	GGAAGAUGAGGAAGA-GGAAGA&UCUUCUAUUUUUCU-AUUUUCC	2	0.999951406790964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN15722_c0_g2_1163_TPlot.pdf
TRINITY_DN15722_c0_g2:1164	si_s78	TRINITY_DN15722_c0_g2	1151	1173	1164	-26.20	-19.70	0.751908396946565	8	1-11,1173-1163;12-15,1161-1158;16-21,1156-1151	x-x,1162-1162[BULt];x-x,1157-1157[BULt]	((((((.((((.(((((((((((&)))))))))))-))))-))))))	GGAAGAUGAGGAAGAGGAAGAGA&UUUUUUUCUUU-CCUU-UCUUCU	4	0.99999999999152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15722_c0_g2_1164_TPlot.pdf
TRINITY_DN15722_c0_g2:1166	si_s80	TRINITY_DN15722_c0_g2	1152	1175	1166	-28.20	-20.50	0.726950354609929	6.5	1-10,1175-1166;11-16,1164-1159;17-21,1156-1152	x-x,1165-1165[BULt];x-x,1158-1157[BULt]	(((((..((((((.((((((((((&))))))))))-))))))--)))))	GAAGAUGAGGAAGAGGAAGAGAAA&UUUUUCUUUC-CUUUCU--UCUUC	3	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN15722_c0_g2_1166_TPlot.pdf
TRINITY_DN15722_c0_g2:1167	si_s85	TRINITY_DN15722_c0_g2	1156	1176	1167	-33.80	-23.10	0.683431952662722	6	1-5,1176-1172;7-20,1170-1157	6-6,1171-1171[SIL];21-21,1156-1156[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	AUGAGGAAGAGGAAGAGAAAG&CUUUCCUUUCUUCUUCUUCGC	3	0.999999999991969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN15722_c0_g2_1167_TPlot.pdf
TRINITY_DN15722_c0_g2:1168	si_s84	TRINITY_DN15722_c0_g2	1157	1177	1168	-32.30	-24.70	0.764705882352941	5.5	1-6,1177-1172;8-20,1170-1158	7-7,1171-1171[SIL];21-21,1157-1157[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UGAGGAAGAGGAAGAGAAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN15722_c0_g2_1168_TPlot.pdf
TRINITY_DN15722_c0_g2:1171	si_s75	TRINITY_DN15722_c0_g2	1159	1180	1171	-24.00	-18.50	0.770833333333333	7	3-15,1178-1166;16-21,1164-1159	1-2,1180-1179[UP5];x-x,1165-1165[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGGAAGAGGAAGAGAAAGAAGU&UAUUUUUUUUCUUUC-CUUUCU	3	0.999999871993792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN15722_c0_g2_1171_TPlot.pdf
TRINITY_DN15722_c0_g2:1172	si_s70	TRINITY_DN15722_c0_g2	1160	1180	1172	-25.80	-18.30	0.709302325581395	6	1-6,1180-1175;8-19,1174-1163;20-21,1161-1160	7-7,x-x[BULq];x-x,1162-1162[BULt]	((.((((((((((((-((((((&)))))).))))))))))))-))	GGAAGAGGAAGAGAA-AGAAGU&ACUUCUAUUUUUUUUCUUU-CC	2	0.999997725566122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN15722_c0_g2_1172_TPlot.pdf
TRINITY_DN15722_c0_g2:1219	si_s73	TRINITY_DN15722_c0_g2	1204	1228	1219	-24.00	-16.40	0.683333333333333	9.5	1-8,1228-1221;10-14,1219-1215;15-21,1210-1204	9-9,1220-1220[SIL];x-x,1214-1211[BULt]	(((((((....(((((.((((((((&)))))))).)))))----)))))))	AAAGGAAAUCUGGAGAUAAGAUGGA&UCUAUUUUUUUUCU----UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN15722_c0_g2_1219_TPlot.pdf
TRINITY_DN15722_c0_g2:1220	si_s72	TRINITY_DN15722_c0_g2	1205	1229	1220	-24.10	-15.70	0.651452282157676	10.5	2-9,1228-1221;11-15,1219-1215;16-21,1210-1205	1-1,1229-1229[UP5];10-10,1220-1220[SIL];x-x,1214-1211[BULt]	((((((....(((((.((((((((.&.)))))))).)))))----))))))	AAGGAAAUCUGGAGAUAAGAUGGAU&UUCUAUUUUUUUUCU----UUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN15722_c0_g2_1220_TPlot.pdf
TRINITY_DN15722_c0_g2:590	si_s78	TRINITY_DN15722_c0_g2	577	599	590	-26.20	-18.60	0.709923664122137	8	2-13,598-587;15-20,583-578	1-1,599-599[UP5];14-14,586-584[AILt];21-21,577-577[UP3]	.((((((...((((((((((((.&.))))))))))))--.)))))).	UGAAGAAUUUGGAAGGAAGAGAU&UUUUUUUCUUUCC--UUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN15722_c0_g2_590_TPlot.pdf
TRINITY_DN15722_c0_g2:873	si_s79	TRINITY_DN15722_c0_g2	861	882	873	-26.20	-17.40	0.66412213740458	7	2-10,881-873;12-21,870-861	1-1,882-882[UP5];11-11,872-871[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	AAGAAGAAAGCUAAAGGAGAAU&UUUUUUCUUU-CCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15722_c0_g2_873_TPlot.pdf
TRINITY_DN15732_c0_g2:357	si_a23	TRINITY_DN15732_c0_g2	346	366	357	-22.80	-15.80	0.692982456140351	13	7-20,360-347	1-6,366-361[UP5];21-21,346-346[UP3]	.((((((((((((((......&......)))))))))))))).	CCUUGGGACUAAAAAAGGCAC&UAUUUAUUUUUAGUUCUAAGA	0	0.155998235451317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN15732_c0_g2_357_TPlot.pdf
TRINITY_DN15732_c0_g3:51	si_a98	TRINITY_DN15732_c0_g3	40	61	51	-26.40	-20.50	0.776515151515152	8	2-6,60-56;8-19,53-42	1-1,61-61[UP5];7-7,55-54[AILt];20-21,41-40[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	GCUUUUAUCUUCGUAGGCCUUG&AAAGGU-AACGAAGAUAAAAUA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN15732_c0_g3_51_TPlot.pdf
TRINITY_DN15736_c0_g1:41	si_a851	TRINITY_DN15736_c0_g1	31	50	41	-29.30	-19.90	0.679180887372014	8.5	1-12,50-39;14-16,38-36	13-13,x-x[BULq];17-21,35-31[UP3]	.....(((-((((((((((((&)))))))))))).))).....	GGCAAGGG-UUCAGGUUGGCA&UGCUAACUUGAAAUCCAAUUA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a851_TRINITY_DN15736_c0_g1_41_TPlot.pdf
TRINITY_DN15739_c1_g1:64	si_a287	TRINITY_DN15739_c1_g1	52	73	64	-29.20	-19.60	0.671232876712329	11	1-10,73-64;11-15,62-58	x-x,63-63[BULt];16-21,57-52[UP3]	......(((((.((((((((((&))))))))))-)))))......	GUAACCUGGGUACCAGGCGAUC&GAUCGCUUGG-AUUUAAAAAAG	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN15739_c1_g1_64_TPlot.pdf
TRINITY_DN15744_c0_g1:2390	si_a449	TRINITY_DN15744_c0_g1	2379	2399	2390	-25.70	-17.20	0.669260700389105	10	5-20,2395-2380	1-4,2399-2396[UP5];21-21,2379-2379[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUAUGGCAACAAUUGUGAGA&UGAGAUAAUUGUUGUUAUAUA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN15744_c0_g1_2390_TPlot.pdf
TRINITY_DN15744_c0_g1:2391	si_a448	TRINITY_DN15744_c0_g1	2380	2400	2391	-25.50	-16.90	0.662745098039216	11	6-21,2395-2380	1-5,2400-2396[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUAUGGCAACAAUUGUGAGAU&AUGAGAUAAUUGUUGUUAUAU	2	0.996613268617216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN15744_c0_g1_2391_TPlot.pdf
TRINITY_DN15744_c0_g1:3830	si_s68	TRINITY_DN15744_c0_g1	3819	3839	3830	-23.10	-15.40	0.666666666666667	7.5	1-3,3839-3837;5-9,3835-3831;12-21,3828-3819	4-4,3836-3836[SIL];10-11,3830-3829[SIL]	((((((((((..(((((.(((&))).)))))..))))))))))	GAAGAAAAAAUUUGGAAAUUG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN15744_c0_g1_3830_TPlot.pdf
TRINITY_DN15744_c0_g1:3917	si_s315	TRINITY_DN15744_c0_g1	3905	3926	3917	-31.60	-20.70	0.65506329113924	10	1-11,3926-3916;12-18,3914-3908	x-x,3915-3915[BULt];19-21,3907-3905[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	CUUUGGCAAGUGGGGGCGGAAU&AUUCUGUCCUU-CUUGUUACAA	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN15744_c0_g1_3917_TPlot.pdf
TRINITY_DN1574_c0_g1:192	si_a218	TRINITY_DN1574_c0_g1	181	201	192	-26.60	-17.50	0.657894736842105	14	7-20,195-182	1-6,201-196[UP5];21-21,181-181[UP3]	.((((((((((((((......&......)))))))))))))).	GAGAGGCAUGGGUUUUUUGUC&CUAAUUAAACUCAUGUUUCUA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN1574_c0_g1_192_TPlot.pdf
TRINITY_DN1574_c0_g1:5203	si_a290	TRINITY_DN1574_c0_g1	5192	5212	5203	-27.20	-18.60	0.683823529411765	7.5	2-9,5211-5204;11-16,5202-5197;18-21,5195-5192	1-1,5212-5212[UP5];10-10,5203-5203[SIL];17-17,5196-5196[SIL]	((((.((((((.((((((((.&.)))))))).)))))).))))	AGUCAUUUUUGUGUCCAGGCC&CGCUUGGAUUUAAAAAAGAUU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a290_TRINITY_DN1574_c0_g1_5203_TPlot.pdf
TRINITY_DN1574_c0_g1:6396	si_a290	TRINITY_DN1574_c0_g1	6385	6405	6396	-27.20	-18.60	0.683823529411765	7.5	2-9,6404-6397;11-16,6395-6390;18-21,6388-6385	1-1,6405-6405[UP5];10-10,6396-6396[SIL];17-17,6389-6389[SIL]	((((.((((((.((((((((.&.)))))))).)))))).))))	AGUCAUUUUUGUGUCCAGGCC&CGCUUGGAUUUAAAAAAGAUU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a290_TRINITY_DN1574_c0_g1_6396_TPlot.pdf
TRINITY_DN1574_c0_g1:6934	si_s579	TRINITY_DN1574_c0_g1	6923	6944	6934	-26.70	-17.80	0.666666666666667	5.5	1-9,6944-6936;10-21,6934-6923	x-x,6935-6935[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	UGUUUGUGGUUUGUUUUGUUCC&GGAAUAAAA-AAAUCAUGGAUA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN1574_c0_g1_6934_TPlot.pdf
TRINITY_DN15752_c0_g1:305	si_s75	TRINITY_DN15752_c0_g1	289	314	305	-24.00	-17.30	0.720833333333333	9	3-13,312-302;14-21,296-289	1-2,314-313[UP5];x-x,301-297[BULt]	((((((((.....(((((((((((..&..)))))))))))-----))))))))	AGAAAGGAUGUAGAAGAAGAAAAAGA&UAUUUUUUUUCUU-----UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN15752_c0_g1_305_TPlot.pdf
TRINITY_DN15755_c0_g1:1003	si_s817	TRINITY_DN15755_c0_g1	992	1014	1003	-24.50	-17.30	0.706122448979592	8	1-9,1014-1006;11-19,1002-994	10-10,1005-1003[AILt];20-21,993-992[UP3]	..(((((((((...(((((((((&)))))))))--.)))))))))..	CCUUCAUUAUUUGUAGAAAAGGU&ACCUUUUCU--UAAUAAUGAAAA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN15755_c0_g1_1003_TPlot.pdf
TRINITY_DN15755_c0_g1:1006	si_s816	TRINITY_DN15755_c0_g1	993	1015	1006	-24.90	-17.30	0.694779116465864	8	2-10,1014-1006;12-20,1002-994	1-1,1015-1015[UP5];11-11,1005-1003[AILt];21-21,993-993[UP3]	.(((((((((...(((((((((.&.)))))))))--.))))))))).	CUUCAUUAUUUGUAGAAAAGGUU&UACCUUUUCU--UAAUAAUGAAA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN15755_c0_g1_1006_TPlot.pdf
TRINITY_DN15755_c0_g1:1007	si_s815	TRINITY_DN15755_c0_g1	994	1016	1007	-25.00	-17.00	0.68	9	3-11,1014-1006;13-21,1002-994	1-2,1016-1015[UP5];12-12,1005-1003[AILt]	(((((((((...(((((((((..&..)))))))))--.)))))))))	UUCAUUAUUUGUAGAAAAGGUUC&UUACCUUUUCU--UAAUAAUGAA	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN15755_c0_g1_1007_TPlot.pdf
TRINITY_DN15755_c0_g1:1738	si_a847	TRINITY_DN15755_c0_g1	1725	1747	1738	-31.20	-20.60	0.66025641025641	6	1-7,1747-1741;9-16,1739-1732;17-20,1729-1726	8-8,1740-1740[SIL];x-x,1731-1730[BULt];21-21,1725-1725[UP3]	.((((..((((((((.(((((((&))))))).))))))))--)))).	AGGAUAUUUCAAGUUUGUAACUU&AAGUUGCUAACUUGAA--AUCCA	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN15755_c0_g1_1738_TPlot.pdf
TRINITY_DN15759_c0_g1:256	si_s397	TRINITY_DN15759_c0_g1	245	266	256	-32.10	-22.70	0.707165109034268	7.5	1-9,266-258;10-16,256-250	x-x,257-257[BULt];17-21,249-245[UP3]	.....(((((((.(((((((((&)))))))))-))))))).....	AAAUGUGUCUUCACUUGGAAUG&CAUUCCAAG-GAAGACGAAAAA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN15759_c0_g1_256_TPlot.pdf
TRINITY_DN15759_c0_g1:258	si_s396	TRINITY_DN15759_c0_g1	246	267	258	-32.90	-24.20	0.735562310030395	6.5	1-10,267-258;11-17,256-250	x-x,257-257[BULt];18-21,249-246[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AAUGUGUCUUCACUUGGAAUGU&ACAUUCCAAG-GAAGACGAAAA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN15759_c0_g1_258_TPlot.pdf
TRINITY_DN15759_c0_g1:259	si_s395	TRINITY_DN15759_c0_g1	247	268	259	-33.30	-24.20	0.726726726726727	6.5	2-11,267-258;12-18,256-250	1-1,268-268[UP5];x-x,257-257[BULt];19-21,249-247[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	AUGUGUCUUCACUUGGAAUGUU&UACAUUCCAAG-GAAGACGAAA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s395_TRINITY_DN15759_c0_g1_259_TPlot.pdf
TRINITY_DN15759_c1_g1:107	si_s121	TRINITY_DN15759_c1_g1	96	116	107	-27.00	-18.90	0.7	6	2-17,115-100	1-1,116-116[UP5];18-21,99-96[UP3]	....((((((((((((((((.&.))))))))))))))))....	GAGAAACUCUUUUAUUUUUCA&AGAAAAAUAGAAGAGUUGAAU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN15759_c1_g1_107_TPlot.pdf
TRINITY_DN15759_c1_g1:109	si_s119	TRINITY_DN15759_c1_g1	98	118	109	-27.40	-18.90	0.68978102189781	8	4-19,115-100	1-3,118-116[UP5];20-21,99-98[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAAACUCUUUUAUUUUUCAAG&AUAGAAAAAUAGAAGAGUUGA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN15759_c1_g1_109_TPlot.pdf
TRINITY_DN15759_c1_g1:110	si_s118	TRINITY_DN15759_c1_g1	99	119	110	-26.40	-18.90	0.715909090909091	8.5	5-20,115-100	1-4,119-116[UP5];21-21,99-99[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAACUCUUUUAUUUUUCAAGG&AAUAGAAAAAUAGAAGAGUUG	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN15759_c1_g1_110_TPlot.pdf
TRINITY_DN15761_c0_g2:382	si_a98	TRINITY_DN15761_c0_g2	371	391	382	-26.40	-17.60	0.666666666666667	11.5	4-16,388-376	1-3,391-389[UP5];17-21,375-371[UP3]	.....(((((((((((((...&...))))))))))))).....	AAAGAUGUCUUCGUUAUCAGC&AAAGGUAACGAAGAUAAAAUA	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN15761_c0_g2_382_TPlot.pdf
TRINITY_DN15761_c0_g2:383	si_a97	TRINITY_DN15761_c0_g2	372	392	383	-26.00	-17.60	0.676923076923077	12.5	5-17,388-376	1-4,392-389[UP5];18-21,375-372[UP3]	....(((((((((((((....&....)))))))))))))....	AAGAUGUCUUCGUUAUCAGCU&AAAAGGUAACGAAGAUAAAAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN15761_c0_g2_383_TPlot.pdf
TRINITY_DN15763_c0_g1:506	si_a399	TRINITY_DN15763_c0_g1	494	515	506	-22.60	-14.90	0.65929203539823	7.5	1-13,515-503;14-19,501-496	x-x,502-502[BULt];20-21,495-494[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	GAGAAUAGCAAUAGUUCUGUAU&AUAUAGAAUUGUU-UUGUUUAU	4	0.999999999933184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN15763_c0_g1_506_TPlot.pdf
TRINITY_DN15763_c0_g1:507	si_a398	TRINITY_DN15763_c0_g1	495	516	507	-22.40	-15.10	0.674107142857143	7.5	2-14,515-503;15-20,501-496	1-1,516-516[UP5];x-x,502-502[BULt];21-21,495-495[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	AGAAUAGCAAUAGUUCUGUAUA&AAUAUAGAAUUGUU-UUGUUUA	2	0.999927632264917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN15763_c0_g1_507_TPlot.pdf
TRINITY_DN15767_c0_g1:232	si_a546	TRINITY_DN15767_c0_g1	221	241	232	-28.60	-19.60	0.685314685314685	10	1-11,241-231;13-18,229-224	12-12,230-230[SIL];19-21,223-221[UP3]	...((((((.(((((((((((&))))))))))).))))))...	ACGAGAGGACUGGGUUGGGCC&GGUUCAAUCUAUUUCUUUAUC	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN15767_c0_g1_232_TPlot.pdf
TRINITY_DN15767_c0_g1:234	si_a544	TRINITY_DN15767_c0_g1	223	243	234	-28.90	-19.70	0.681660899653979	10	3-13,241-231;15-20,229-224	1-2,243-242[UP5];14-14,230-230[SIL];21-21,223-223[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	GAGAGGACUGGGUUGGGCCAA&UCGGUUCAAUCUAUUUCUUUA	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN15767_c0_g1_234_TPlot.pdf
TRINITY_DN15767_c0_g1:235	si_a543	TRINITY_DN15767_c0_g1	224	244	235	-28.70	-19.30	0.672473867595819	10.5	4-14,241-231;16-21,229-224	1-3,244-242[UP5];15-15,230-230[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AGAGGACUGGGUUGGGCCAAC&AUCGGUUCAAUCUAUUUCUUU	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN15767_c0_g1_235_TPlot.pdf
TRINITY_DN15767_c0_g1:253	si_a701	TRINITY_DN15767_c0_g1	232	262	253	-31.20	-20.40	0.653846153846154	15	1-13,262-250;14-18,239-235	x-x,249-240[BULt];19-21,234-232[UP3]	...(((((..........(((((((((((((&)))))))))))))----------)))))...	GGGUUGGGCCAACCUAUGGUGUACCGGUUGU&ACAACUGGUACAU----------UCCAAAAU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN15767_c0_g1_253_TPlot.pdf
TRINITY_DN1576_c0_g1:1332	si_s375	TRINITY_DN1576_c0_g1	1321	1341	1332	-44.10	-30.38	0.688888888888889	8.5	1-4,1341-1338;8-12,1334-1330;14-21,1328-1321	5-7,1337-1335[SIL];13-13,1329-1329[SIL]	((((((((.(((((...((((&))))...))))).))))))))	AGGGCGGAGGCGCGCCAGAUC&GAUCGCUCGCGUGUCCGCCUU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN1576_c0_g1_1332_TPlot.pdf
TRINITY_DN1576_c0_g1:1684	si_a503	TRINITY_DN1576_c0_g1	1673	1693	1684	-32.10	-22.50	0.700934579439252	7.5	4-13,1690-1681;15-19,1679-1675;21-21,1673-1673	1-3,1693-1691[UP5];14-14,1680-1680[SIL];20-20,1674-1674[SIL]	(.(((((.((((((((((...&...)))))))))).))))).)	CUUUCCGCGGAAGACGAAUAA&UUUUUCGUCUUCCUUGGAAUG	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1576_c0_g1_1684_TPlot.pdf
TRINITY_DN1576_c0_g1:1686	si_a501	TRINITY_DN1576_c0_g1	1675	1695	1686	-33.50	-22.40	0.66865671641791	10.5	6-15,1690-1681;17-21,1679-1675	1-5,1695-1691[UP5];16-16,1680-1680[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	UUCCGCGGAAGACGAAUAAGA&CGUUUUUCGUCUUCCUUGGAA	3	0.999999998855167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN1576_c0_g1_1686_TPlot.pdf
TRINITY_DN1576_c0_g1:1738	si_s628	TRINITY_DN1576_c0_g1	1726	1751	1738	-35.40	-24.40	0.689265536723164	11	1-3,1751-1749;4-9,1747-1742;10-15,1738-1733;16-21,1731-1726	x-x,1748-1748[BULt];x-x,1741-1739[BULt];x-x,1732-1732[BULt]	((((((.((((((...((((((.(((&)))-))))))---))))))-))))))	AGGCGCUCUACGACGAAGAGAUACGC&GCG-AUCUUU---UCGUAG-GCGUUU	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN1576_c0_g1_1738_TPlot.pdf
TRINITY_DN1576_c0_g1:2870	si_s100	TRINITY_DN1576_c0_g1	2858	2879	2870	-33.70	-24.00	0.712166172106825	9.5	1-12,2879-2868;14-16,2865-2863	13-13,2867-2866[AILt];17-21,2862-2858[UP3]	.....(((..((((((((((((&))))))))))))-.))).....	GCCUGCCGCUUCCGAGGCGAAG&CUUCGCUUCGGA-UUGGAAAAU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN1576_c0_g1_2870_TPlot.pdf
TRINITY_DN1576_c0_g1:2872	si_s98	TRINITY_DN1576_c0_g1	2860	2881	2872	-34.70	-24.00	0.69164265129683	9.5	3-14,2879-2868;16-18,2865-2863	1-2,2881-2880[UP5];15-15,2867-2866[AILt];19-21,2862-2860[UP3]	...(((..((((((((((((..&..))))))))))))-.)))...	CUGCCGCUUCCGAGGCGAAGUC&UUCUUCGCUUCGGA-UUGGAAA	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN1576_c0_g1_2872_TPlot.pdf
TRINITY_DN1576_c0_g1:2874	si_s96	TRINITY_DN1576_c0_g1	2862	2883	2874	-37.20	-25.40	0.682795698924731	8.5	1-2,2883-2882;5-16,2879-2868;18-20,2865-2863	3-4,2881-2880[SIL];17-17,2867-2866[AILt];21-21,2862-2862[UP3]	.(((..((((((((((((..((&))..))))))))))))-.))).	GCCGCUUCCGAGGCGAAGUCGA&UCUUCUUCGCUUCGGA-UUGGA	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN1576_c0_g1_2874_TPlot.pdf
TRINITY_DN1576_c0_g1:2875	si_s95	TRINITY_DN1576_c0_g1	2863	2884	2875	-36.30	-25.30	0.696969696969697	8.5	2-3,2883-2882;6-17,2879-2868;19-21,2865-2863	1-1,2884-2884[UP5];4-5,2881-2880[SIL];18-18,2867-2866[AILt]	(((..((((((((((((..((.&.))..))))))))))))-.)))	CCGCUUCCGAGGCGAAGUCGAC&UUCUUCUUCGCUUCGGA-UUGG	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN1576_c0_g1_2875_TPlot.pdf
TRINITY_DN1576_c0_g1:2877	si_s93	TRINITY_DN1576_c0_g1	2866	2886	2877	-34.80	-22.80	0.655172413793104	11.5	4-5,2883-2882;8-19,2879-2868	1-3,2886-2884[UP5];6-7,2881-2880[SIL];20-21,2867-2866[UP3]	..((((((((((((..((...&...))..))))))))))))..	CUUCCGAGGCGAAGUCGACGC&UCUUCUUCUUCGCUUCGGAUU	2	0.999999994762911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1576_c0_g1_2877_TPlot.pdf
TRINITY_DN1576_c0_g1:2878	si_a56	TRINITY_DN1576_c0_g1	2866	2887	2878	-38.90	-25.30	0.650385604113111	9.5	1-2,2887-2886;4-10,2884-2878;11-16,2876-2871	3-3,2885-2885[SIL];x-x,2877-2877[BULt];17-21,2870-2866[UP3]	.....((((((.(((((((.((&)).)))))))-)))))).....	CUUCCGAGGCGAAGUCGACGCC&GGAGUCGACU-CGCUUCUUUCA	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN1576_c0_g1_2878_TPlot.pdf
TRINITY_DN1576_c0_g1:2879	si_a55	TRINITY_DN1576_c0_g1	2867	2888	2879	-38.90	-25.30	0.650385604113111	9.5	2-3,2887-2886;5-11,2884-2878;12-17,2876-2871	1-1,2888-2888[UP5];4-4,2885-2885[SIL];x-x,2877-2877[BULt];18-21,2870-2867[UP3]	....((((((.(((((((.((.&.)).)))))))-))))))....	UUCCGAGGCGAAGUCGACGCCG&AGGAGUCGACU-CGCUUCUUUC	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN1576_c0_g1_2879_TPlot.pdf
TRINITY_DN1576_c0_g1:2880	si_a54	TRINITY_DN1576_c0_g1	2868	2889	2880	-37.30	-25.30	0.67828418230563	10.5	3-4,2887-2886;6-12,2884-2878;13-18,2876-2871	1-2,2889-2888[UP5];5-5,2885-2885[SIL];x-x,2877-2877[BULt];19-21,2870-2868[UP3]	...((((((.(((((((.((..&..)).)))))))-))))))...	UCCGAGGCGAAGUCGACGCCGU&UAGGAGUCGACU-CGCUUCUUU	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN1576_c0_g1_2880_TPlot.pdf
TRINITY_DN1576_c0_g1:5543	si_s321	TRINITY_DN1576_c0_g1	5532	5552	5543	-31.00	-20.20	0.651612903225806	8	2-14,5551-5539	1-1,5552-5552[UP5];15-21,5538-5532[UP3]	.......(((((((((((((.&.))))))))))))).......	UUUACAAUGUAACAAGAAGGG&UCCUUCUUGUUACAAACAUAC	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN1576_c0_g1_5543_TPlot.pdf
TRINITY_DN1576_c0_g1:5545	si_s319	TRINITY_DN1576_c0_g1	5534	5554	5545	-31.30	-20.50	0.654952076677316	9	3-16,5552-5539	1-2,5554-5553[UP5];17-21,5538-5534[UP3]	.....((((((((((((((..&..)))))))))))))).....	UACAAUGUAACAAGAAGGGAU&UGUCCUUCUUGUUACAAACAU	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN1576_c0_g1_5545_TPlot.pdf
TRINITY_DN1576_c0_g1:5609	si_s84	TRINITY_DN1576_c0_g1	5595	5619	5609	-32.30	-23.50	0.727554179566564	7	1-8,5619-5612;9-15,5610-5604;16-21,5600-5595	x-x,5611-5611[BULt];x-x,5603-5601[BULt]	((((((...(((((((.((((((((&))))))))-)))))))---))))))	CGAAGAGAUGGAAGAACGGGAAAGG&UCUUUCCU-UUCUUCU---UCUUCG	4	0.99999949106017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1576_c0_g1_5609_TPlot.pdf
TRINITY_DN1576_c0_g1:5615	si_s79	TRINITY_DN1576_c0_g1	5603	5624	5615	-26.20	-18.70	0.713740458015267	10	4-13,5621-5612;14-20,5610-5604	1-3,5624-5622[UP5];x-x,5611-5611[BULt];21-21,5603-5603[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	UGGAAGAACGGGAAAGGGACCG&UUUUUUCUUUCCU-UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1576_c0_g1_5615_TPlot.pdf
TRINITY_DN1576_c0_g1:5616	si_s78	TRINITY_DN1576_c0_g1	5604	5625	5616	-26.20	-18.70	0.713740458015267	11	5-14,5621-5612;15-21,5610-5604	1-4,5625-5622[UP5];x-x,5611-5611[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GGAAGAACGGGAAAGGGACCGA&UUUUUUUCUUUCCU-UUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1576_c0_g1_5616_TPlot.pdf
TRINITY_DN1576_c0_g1:5617	si_s77	TRINITY_DN1576_c0_g1	5605	5626	5617	-25.50	-17.60	0.690196078431373	12.5	6-15,5621-5612;16-21,5610-5605	1-5,5626-5622[UP5];x-x,5611-5611[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	GAAGAACGGGAAAGGGACCGAC&UUUUUUUUCUUUCCU-UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1576_c0_g1_5617_TPlot.pdf
TRINITY_DN15771_c0_g1:1324	si_a769	TRINITY_DN15771_c0_g1	1312	1333	1324	-26.70	-17.92	0.671161048689139	9	1-10,1333-1324;14-21,1319-1312	11-13,1323-1320[AILt]	((((((((....((((((((((&))))))))))-...))))))))	AAGAGUUGCGCACAAUCAAGGA&UUUUUGAUUG-AUUCAACUCUU	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN15771_c0_g1_1324_TPlot.pdf
TRINITY_DN15771_c0_g1:1325	si_a768	TRINITY_DN15771_c0_g1	1313	1334	1325	-28.40	-20.52	0.722535211267606	8	1-11,1334-1324;15-21,1319-1313	12-14,1323-1320[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	AGAGUUGCGCACAAUCAAGGAC&GUUUUUGAUUG-AUUCAACUCU	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN15771_c0_g1_1325_TPlot.pdf
TRINITY_DN15771_c0_g1:1434	si_a141	TRINITY_DN15771_c0_g1	1423	1443	1434	-23.80	-18.30	0.76890756302521	10.5	5-20,1439-1424	1-4,1443-1440[UP5];21-21,1423-1423[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGAACAACAAUGAUUGGAUG&UAAUUAAUCGUUGUUGUUUUA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN15771_c0_g1_1434_TPlot.pdf
TRINITY_DN15771_c0_g1:1436	si_a139	TRINITY_DN15771_c0_g1	1425	1445	1436	-25.90	-17.20	0.664092664092664	13.5	7-21,1439-1425	1-6,1445-1440[UP5]	(((((((((((((((......&......)))))))))))))))	GAACAACAAUGAUUGGAUGGU&AGUAAUUAAUCGUUGUUGUUU	4	0.999920005932043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN15771_c0_g1_1436_TPlot.pdf
TRINITY_DN15771_c2_g2:1280	si_s876	TRINITY_DN15771_c2_g2	1269	1287	1280	-24.20	-15.80	0.652892561983471	6	1-6,1287-1282;9-20,1281-1270	7-8,x-x[BULq];21-21,1269-1269[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	UUUUAUUUUUGGU--UAAGAC&GUCUUAGAACUAAAAAUAAAU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN15771_c2_g2_1280_TPlot.pdf
TRINITY_DN15771_c2_g2:404	si_a635	TRINITY_DN15771_c2_g2	393	413	404	-26.10	-18.20	0.697318007662835	7.5	3-18,411-396	1-2,413-412[UP5];19-21,395-393[UP3]	...((((((((((((((((..&..))))))))))))))))...	CCCACUUGGAAAAAUCGACCU&AUGUCGAUUUUUUUGAGUAAU	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN15771_c2_g2_404_TPlot.pdf
TRINITY_DN15771_c2_g2:405	si_a634	TRINITY_DN15771_c2_g2	394	414	405	-26.40	-18.20	0.689393939393939	8.5	4-19,411-396	1-3,414-412[UP5];20-21,395-394[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCACUUGGAAAAAUCGACCUG&UAUGUCGAUUUUUUUGAGUAA	3	0.999982117446275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN15771_c2_g2_405_TPlot.pdf
TRINITY_DN15773_c0_g1:55	si_s81	TRINITY_DN15773_c0_g1	44	67	55	-28.90	-18.88	0.653287197231834	12.5	1-5,67-63;8-9,58-57;10-21,55-44	6-7,62-59[AILt];x-x,56-56[BULt]	((((((((((((.((....(((((&)))))--..))-))))))))))))	GGAAGAGGAGAGUGAUCUUGAAAG&UUUUC--UUUC-CUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN15773_c0_g1_55_TPlot.pdf
TRINITY_DN15778_c0_g2:1248	si_s72	TRINITY_DN15778_c0_g2	1238	1257	1248	-24.10	-17.20	0.713692946058091	5.5	1-15,1257-1243;18-19,1241-1240	16-17,1242-1242[AILq];20-21,1239-1238[UP3]	..((.-(((((((((((((((&)))))))))))))))..))..	AUGGU-GGAAGAAAAAUAGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999998809142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN15778_c0_g2_1248_TPlot.pdf
TRINITY_DN15778_c0_g2:1249	si_s71	TRINITY_DN15778_c0_g2	1239	1258	1249	-25.70	-17.40	0.67704280155642	5.5	2-16,1257-1243;19-20,1241-1240	1-1,1258-1258[UP5];17-18,1242-1242[AILq];21-21,1239-1239[UP3]	.((.-(((((((((((((((.&.)))))))))))))))..)).	UGGU-GGAAGAAAAAUAGAAA&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN15778_c0_g2_1249_TPlot.pdf
TRINITY_DN15778_c0_g2:1250	si_s70	TRINITY_DN15778_c0_g2	1240	1259	1250	-25.80	-17.00	0.65891472868217	6	3-17,1257-1243;20-21,1241-1240	1-2,1259-1258[UP5];18-19,1242-1242[AILq]	((.-(((((((((((((((..&..)))))))))))))))..))	GGU-GGAAGAAAAAUAGAAAU&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN15778_c0_g2_1250_TPlot.pdf
TRINITY_DN15778_c0_g2:1251	si_s69	TRINITY_DN15778_c0_g2	1240	1260	1251	-23.40	-15.80	0.675213675213675	7.5	4-18,1257-1243;20-21,1241-1240	1-3,1260-1258[UP5];19-19,1242-1242[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GGUGGAAGAAAAAUAGAAAUG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN15778_c0_g2_1251_TPlot.pdf
TRINITY_DN15778_c0_g2:1252	si_s68	TRINITY_DN15778_c0_g2	1241	1268	1252	-23.10	-15.20	0.658008658008658	17	1-4,1268-1265;5-19,1257-1243	x-x,1264-1258[BULt];20-21,1242-1241[UP3]	..(((((((((((((((.......((((&))))-------)))))))))))))))..	GUGGAAGAAAAAUAGAAAUGAAACGUUG&CAAC-------UUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN15778_c0_g2_1252_TPlot.pdf
TRINITY_DN15778_c0_g2:1253	si_s67	TRINITY_DN15778_c0_g2	1242	1269	1253	-25.60	-17.00	0.6640625	16.5	1-5,1269-1265;6-20,1257-1243	x-x,1264-1258[BULt];21-21,1242-1242[UP3]	.(((((((((((((((.......(((((&)))))-------))))))))))))))).	UGGAAGAAAAAUAGAAAUGAAACGUUGU&GCAAC-------UUCUAUUUUUUUUCUU	3	0.999999999997802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN15778_c0_g2_1253_TPlot.pdf
TRINITY_DN15779_c0_g1:254	si_a232	TRINITY_DN15779_c0_g1	242	263	254	-28.20	-18.52	0.656737588652482	6.5	2-13,262-251;17-21,246-242	1-1,263-263[UP5];14-16,250-247[AILt]	(((((....((((((((((((.&.))))))))))))-...)))))	GGUCGUUGAUGAUUAUAGAGAA&GUUUCUAUAAUCA-AUUCGAUC	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN15779_c0_g1_254_TPlot.pdf
TRINITY_DN15779_c0_g1:410	si_s434	TRINITY_DN15779_c0_g1	400	419	410	-21.50	-14.60	0.67906976744186	5.5	1-7,419-413;9-11,411-409;13-21,408-400	8-8,412-412[SIL];12-12,x-x[BULq]	(((((((((-(((.(((((((&))))))).))).)))))))))	UGUAUAAUA-GUGUUUAUUGU&ACAAUAAUUACAUAUUAUAUA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN15779_c0_g1_410_TPlot.pdf
TRINITY_DN1577_c0_g1:201	si_a401	TRINITY_DN1577_c0_g1	191	210	201	-22.60	-16.20	0.716814159292035	9	1-10,210-201;13-19,199-193	11-12,200-200[AILq];20-21,192-191[UP3]	..(((((((.-((((((((((&))))))))))..)))))))..	AAAUAGGCAU-GCAGUUCUAU&AUAGAAUUGUUUUGUUUAUAU	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1577_c0_g1_201_TPlot.pdf
TRINITY_DN1577_c0_g1:202	si_a400	TRINITY_DN1577_c0_g1	192	211	202	-22.80	-17.50	0.767543859649123	7	1-11,211-201;14-20,199-193	12-13,200-200[AILq];21-21,192-192[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	AAUAGGCAU-GCAGUUCUAUA&UAUAGAAUUGUUUUGUUUAUA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1577_c0_g1_202_TPlot.pdf
TRINITY_DN1577_c0_g1:204	si_a398	TRINITY_DN1577_c0_g1	194	213	204	-22.40	-16.00	0.714285714285714	7.5	3-13,211-201;16-21,199-194	1-2,213-212[UP5];14-15,200-200[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	UAGGCAU-GCAGUUCUAUAAG&AAUAUAGAAUUGUUUUGUUUA	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1577_c0_g1_204_TPlot.pdf
TRINITY_DN1577_c0_g2:1289	si_s29	TRINITY_DN1577_c0_g2	1278	1298	1289	-26.40	-17.70	0.670454545454545	9	1-14,1298-1285	15-21,1284-1278[UP3]	.......((((((((((((((&)))))))))))))).......	GCAACAAAUUUGGUUGCGAUC&GAUUGCAACUAAAUCUUUAAU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN1577_c0_g2_1289_TPlot.pdf
TRINITY_DN1577_c0_g2:2130	si_a398	TRINITY_DN1577_c0_g2	2117	2139	2130	-22.40	-15.30	0.683035714285714	7	1-14,2139-2126;15-19,2123-2119	x-x,2125-2124[BULt];20-21,2118-2117[UP3]	..(((((..((((((((((((((&))))))))))))))--)))))..	AUAACGGUCGGCGAUUCUAUAUU&AAUAUAGAAUUGUU--UUGUUUA	3	0.99999922428716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1577_c0_g2_2130_TPlot.pdf
TRINITY_DN1577_c0_g2:2131	si_a397	TRINITY_DN1577_c0_g2	2118	2140	2131	-24.00	-15.70	0.654166666666667	7	2-15,2139-2126;16-20,2123-2119	1-1,2140-2140[UP5];x-x,2125-2124[BULt];21-21,2118-2118[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	UAACGGUCGGCGAUUCUAUAUUG&GAAUAUAGAAUUGUU--UUGUUU	3	0.999998660078045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN1577_c0_g2_2131_TPlot.pdf
TRINITY_DN1577_c0_g2:2153	si_a123	TRINITY_DN1577_c0_g2	2143	2162	2153	-26.60	-20.00	0.75187969924812	5.5	1-16,2162-2147;18-20,2146-2144	17-17,x-x[BULq];21-21,2143-2143[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	CUAC-GUUGCUAUGGAAUAAG&CUUGUUUUAUAGCAAUAGUAA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN1577_c0_g2_2153_TPlot.pdf
TRINITY_DN1577_c0_g2:2155	si_a121	TRINITY_DN1577_c0_g2	2142	2164	2155	-29.30	-19.30	0.658703071672355	8.5	3-18,2162-2147;19-21,2144-2142	1-2,2164-2163[UP5];x-x,2146-2145[BULt]	(((..((((((((((((((((..&..))))))))))))))))--)))	ACUACGUUGCUAUGGAAUAAGAA&AGCUUGUUUUAUAGCAAU--AGU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN1577_c0_g2_2155_TPlot.pdf
TRINITY_DN1577_c0_g2:2835	si_s494	TRINITY_DN1577_c0_g2	2824	2844	2835	-19.80	-13.40	0.676767676767677	7	3-9,2842-2836;11-19,2834-2826	1-2,2844-2843[UP5];10-10,2835-2835[SIL];20-21,2825-2824[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	UGUGUUUUGUUAAUAUUUAUU&UUUAAAUAUAAACAAAACAAU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN1577_c0_g2_2835_TPlot.pdf
TRINITY_DN1577_c0_g2:2837	si_s492	TRINITY_DN1577_c0_g2	2826	2846	2837	-20.10	-13.20	0.656716417910448	9	5-11,2842-2836;13-21,2834-2826	1-4,2846-2843[UP5];12-12,2835-2835[SIL]	(((((((((.(((((((....&....))))))).)))))))))	UGUUUUGUUAAUAUUUAUUGU&UAUUUAAAUAUAAACAAAACA	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN1577_c0_g2_2837_TPlot.pdf
TRINITY_DN1577_c0_g2:432	si_a401	TRINITY_DN1577_c0_g2	422	441	432	-22.60	-16.20	0.716814159292035	9	1-10,441-432;13-19,430-424	11-12,431-431[AILq];20-21,423-422[UP3]	..(((((((.-((((((((((&))))))))))..)))))))..	AAAUAGGCAU-GCAGUUCUAU&AUAGAAUUGUUUUGUUUAUAU	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1577_c0_g2_432_TPlot.pdf
TRINITY_DN1577_c0_g2:434	si_a399	TRINITY_DN1577_c0_g2	424	443	434	-22.60	-17.20	0.761061946902655	6	2-12,442-432;15-21,430-424	1-1,443-443[UP5];13-14,431-431[AILq]	(((((((.-(((((((((((.&.)))))))))))..)))))))	AUAGGCAU-GCAGUUCUAUAA&AUAUAGAAUUGUUUUGUUUAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1577_c0_g2_434_TPlot.pdf
TRINITY_DN1577_c0_g2:435	si_a398	TRINITY_DN1577_c0_g2	425	444	435	-22.40	-16.00	0.714285714285714	7.5	3-13,442-432;16-21,430-425	1-2,444-443[UP5];14-15,431-431[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	UAGGCAU-GCAGUUCUAUAAG&AAUAUAGAAUUGUUUUGUUUA	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1577_c0_g2_435_TPlot.pdf
TRINITY_DN15781_c0_g1:839	si_s16	TRINITY_DN15781_c0_g1	828	848	839	-25.60	-17.60	0.6875	7.5	1-5,848-844;8-19,841-830	6-7,843-842[SIL];20-21,829-828[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	ACGCAAUCGAUGUAAGAAUAA&UUAUUACUAUAUUGAUUGCAA	0	0.0902233407234618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN15781_c0_g1_839_TPlot.pdf
TRINITY_DN15781_c0_g1:840	si_s15	TRINITY_DN15781_c0_g1	829	849	840	-25.60	-17.60	0.6875	7.5	2-6,848-844;9-20,841-830	1-1,849-849[UP5];7-8,843-842[SIL];21-21,829-829[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	CGCAAUCGAUGUAAGAAUAAG&AUUAUUACUAUAUUGAUUGCA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN15781_c0_g1_840_TPlot.pdf
TRINITY_DN15785_c0_g1:1765	si_a771	TRINITY_DN15785_c0_g1	1749	1774	1765	-29.40	-19.30	0.656462585034014	11	1-10,1774-1765;11-14,1761-1758;15-21,1755-1749	x-x,1764-1762[BULt];x-x,1757-1756[BULt]	(((((((..((((...((((((((((&))))))))))---))))--)))))))	AGAAGAGAUUUGGACAGUCAGUCAAA&UUUGAUUGAU---UCAA--CUCUUCU	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN15785_c0_g1_1765_TPlot.pdf
TRINITY_DN15785_c0_g1:2780	si_a69	TRINITY_DN15785_c0_g1	2769	2790	2780	-24.00	-18.90	0.7875	5.5	1-9,2790-2782;10-19,2780-2771	x-x,2781-2781[BULt];20-21,2770-2769[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	GAGGGAGACAAUAUUGAAAGAA&UUCUUUCAA-AUUGUUUUUCAU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN15785_c0_g1_2780_TPlot.pdf
TRINITY_DN15785_c0_g1:2879	si_s776	TRINITY_DN15785_c0_g1	2868	2888	2879	-25.10	-16.80	0.669322709163347	8	1-15,2888-2874	16-21,2873-2868[UP3]	......(((((((((((((((&)))))))))))))))......	AUGCCAUAUAGUAAUAGUGAU&AUUACUAUUGCUAUAAAACAA	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN15785_c0_g1_2879_TPlot.pdf
TRINITY_DN15785_c0_g1:2880	si_s775	TRINITY_DN15785_c0_g1	2869	2889	2880	-25.00	-17.00	0.68	8	2-16,2888-2874	1-1,2889-2889[UP5];17-21,2873-2869[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGCCAUAUAGUAAUAGUGAUA&AAUUACUAUUGCUAUAAAACA	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN15785_c0_g1_2880_TPlot.pdf
TRINITY_DN15785_c0_g1:2882	si_s773	TRINITY_DN15785_c0_g1	2871	2891	2882	-23.10	-17.00	0.735930735930736	9.5	4-18,2888-2874	1-3,2891-2889[UP5];19-21,2873-2871[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCAUAUAGUAAUAGUGAUAAA&UUAAUUACUAUUGCUAUAAAA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN15785_c0_g1_2882_TPlot.pdf
TRINITY_DN15785_c0_g1:3609	si_s184	TRINITY_DN15785_c0_g1	3599	3619	3609	-33.40	-23.80	0.712574850299401	5	1-7,3619-3613;8-15,3611-3604;17-21,3603-3599	x-x,3612-3612[BULt];16-16,x-x[BULq]	(((((-((((((((.(((((((&)))))))-)))))))).)))))	CAGGG-AAUCGUUACCUCGGGU&GCCCGAG-UAACGAUUAUUUUG	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN15785_c0_g1_3609_TPlot.pdf
TRINITY_DN15785_c0_g1:922	si_s93	TRINITY_DN15785_c0_g1	910	934	922	-34.80	-22.80	0.655172413793104	12	1-6,934-929;7-13,925-919;14-18,917-913	x-x,928-926[BULt];x-x,918-918[BULt];19-21,912-910[UP3]	...(((((.(((((((...((((((&))))))---)))))))-)))))...	ACGCCGAACGCGAAGACCGAGGGGA&UCUUCU---UCUUCGC-UUCGGAUU	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN15785_c0_g1_922_TPlot.pdf
TRINITY_DN15786_c2_g1:173	si_a486	TRINITY_DN15786_c2_g1	163	182	173	-24.90	-16.30	0.654618473895582	7.5	3-11,180-172;13-19,171-165	1-2,182-181[UP5];12-12,x-x[BULq];20-21,164-163[UP3]	..(((((((-(((((((((..&..))))))))).)))))))..	CCAACGACG-AUUCUAUAUCC&UUAUAUAGAAUAUGUCGUUUU	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN15786_c2_g1_173_TPlot.pdf
TRINITY_DN15786_c2_g1:87	si_a880	TRINITY_DN15786_c2_g1	77	96	87	-27.80	-18.60	0.669064748201439	7	1-4,96-93;7-14,90-83;16-20,82-78	5-6,92-91[SIL];15-15,x-x[BULq];21-21,77-77[UP3]	.(((((-((((((((..((((&))))..)))))))).))))).	AGCUGU-UUGAUUGCUUCUAA&UUAGUUGCAAUCAAUAUAGUA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN15786_c2_g1_87_TPlot.pdf
TRINITY_DN1578_c0_g1:758	si_s71	TRINITY_DN1578_c0_g1	747	772	758	-25.70	-17.20	0.669260700389105	15	1-4,772-769;5-12,763-756;14-21,754-747	x-x,768-764[BULt];13-13,755-755[SIL]	((((((((.((((((((.....((((&))))-----)))))))).))))))))	AGGAAAGACGAAGAGUGCUCUUGAAG&CUUC-----UAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1578_c0_g1_758_TPlot.pdf
TRINITY_DN15798_c0_g1:1841	si_s552	TRINITY_DN15798_c0_g1	1830	1851	1841	-21.10	-14.62	0.692890995260663	8.5	1-9,1851-1843;13-21,1838-1830	10-12,1842-1839[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	CGGAAAUAUAUUUUUCUAUUUU&AAAAUAGAA-UUAAUAUUUUCG	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN15798_c0_g1_1841_TPlot.pdf
TRINITY_DN1579_c0_g1:1024	si_a349	TRINITY_DN1579_c0_g1	1011	1033	1024	-21.30	-14.10	0.661971830985915	10.5	4-12,1030-1022;13-21,1019-1011	1-3,1033-1031[UP5];x-x,1021-1020[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	CGAAAUAGAUUGUUAAUAUUGUU&GAAAAUAUUAAU--UCUAUUUUG	2	0.984345763725476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN1579_c0_g1_1024_TPlot.pdf
TRINITY_DN1579_c0_g1:649	si_a497	TRINITY_DN1579_c0_g1	638	657	649	-32.00	-20.80	0.65	11	3-8,655-650;11-21,648-638	1-2,657-656[UP5];9-10,649-649[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	GGGGAAGACGAC-GAUGAUCA&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1579_c0_g1_649_TPlot.pdf
TRINITY_DN1579_c0_g1:653	si_a140	TRINITY_DN1579_c0_g1	642	662	653	-25.20	-17.30	0.686507936507937	6.5	2-6,661-657;8-21,655-642	1-1,662-662[UP5];7-7,656-656[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	AAGACGACGAUGAUCAAUUGA&GUAAUUAAUCGUUGUUGUUUU	4	0.999903674439181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN1579_c0_g1_653_TPlot.pdf
TRINITY_DN157_c0_g1:1068	si_a493	TRINITY_DN157_c0_g1	1057	1077	1068	-29.50	-19.80	0.671186440677966	9	4-18,1074-1060	1-3,1077-1075[UP5];19-21,1059-1057[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUCACGAAAAACGACAUGACG&GAAUAUGUCGUUUUUCGUCUU	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN157_c0_g1_1068_TPlot.pdf
TRINITY_DN157_c0_g1:1069	si_a492	TRINITY_DN157_c0_g1	1058	1078	1069	-30.20	-19.80	0.655629139072848	10	5-19,1074-1060	1-4,1078-1075[UP5];20-21,1059-1058[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCACGAAAAACGACAUGACGC&AGAAUAUGUCGUUUUUCGUCU	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN157_c0_g1_1069_TPlot.pdf
TRINITY_DN157_c0_g1:1071	si_a490	TRINITY_DN157_c0_g1	1060	1080	1071	-28.10	-19.80	0.704626334519573	12	7-21,1074-1060	1-6,1080-1075[UP5]	(((((((((((((((......&......)))))))))))))))	ACGAAAAACGACAUGACGCCC&AUAGAAUAUGUCGUUUUUCGU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN157_c0_g1_1071_TPlot.pdf
TRINITY_DN157_c0_g1:1341	si_a192	TRINITY_DN157_c0_g1	1329	1350	1341	-31.90	-22.50	0.705329153605016	9	1-3,1350-1348;6-16,1345-1335;18-21,1332-1329	4-5,1347-1346[SIL];17-17,1334-1333[AILt]	((((..(((((((((((..(((&)))..)))))))))))-.))))	UUGUGGGGUGAACGGGGUCGGA&UCUUUCCCUGUUCACU-AAUAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN157_c0_g1_1341_TPlot.pdf
TRINITY_DN157_c0_g1:1342	si_a191	TRINITY_DN157_c0_g1	1331	1351	1342	-32.00	-22.20	0.69375	11.5	2-4,1350-1348;7-17,1345-1335	1-1,1351-1351[UP5];5-6,1347-1346[SIL];18-21,1334-1331[UP3]	....(((((((((((..(((.&.)))..)))))))))))....	GUGGGGUGAACGGGGUCGGAA&AUCUUUCCCUGUUCACUAAUA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN157_c0_g1_1342_TPlot.pdf
TRINITY_DN157_c0_g1:1347	si_a186	TRINITY_DN157_c0_g1	1336	1356	1347	-31.50	-20.50	0.650793650793651	16.5	7-9,1350-1348;12-21,1345-1336	1-6,1356-1351[UP5];10-11,1347-1346[SIL]	((((((((((..(((......&......)))..))))))))))	GUGAACGGGGUCGGAAAAUCC&AUAAUAUCUUUCCCUGUUCAC	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN157_c0_g1_1347_TPlot.pdf
TRINITY_DN157_c0_g1:1391	si_a151	TRINITY_DN157_c0_g1	1381	1400	1391	-28.90	-18.90	0.653979238754325	7	2-10,1399-1391;13-20,1389-1382	1-1,1400-1400[UP5];11-12,1390-1390[AILq];21-21,1381-1381[UP3]	.((((((((.-(((((((((.&.)))))))))..)))))))).	UGGUUGAUCG-AAAACAACAU&UUGUUGUUUUAAGGUCAAUCU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN157_c0_g1_1391_TPlot.pdf
TRINITY_DN157_c0_g1:44	si_s678	TRINITY_DN157_c0_g1	31	53	44	-25.20	-16.80	0.666666666666667	8	2-14,52-40;15-19,37-33	1-1,53-53[UP5];x-x,39-38[BULt];20-21,32-31[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	ACGGGCUUACGUGUUUCUGUAAA&AUUAUAGAAACAUG--AGUUUAA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN157_c0_g1_44_TPlot.pdf
TRINITY_DN157_c0_g1:727	si_s896	TRINITY_DN157_c0_g1	716	736	727	-31.60	-20.60	0.651898734177215	5.5	1-4,736-733;5-8,731-728;10-20,727-717	x-x,732-732[BULt];9-9,x-x[BULq];21-21,716-716[UP3]	.(((((((((((-((((.((((&))))-)))).))))))))))).	CGGAAUUGAAGA-AAAGUCCUA&UAGG-CUUUCUCUUCAAUUUCA	3	0.999999912866153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN157_c0_g1_727_TPlot.pdf
TRINITY_DN15801_c2_g1:106	si_s113	TRINITY_DN15801_c2_g1	89	115	106	-26.30	-17.16	0.652471482889734	8	2-14,114-102;16-21,94-89	1-1,115-115[UP5];15-15,101-95[AILt]	((((((.......(((((((((((((.&.)))))))))))))------.))))))	CUUCUAAUUUUCAUUUUCUAUUUUCCC&UGGAAAAUAGAAAA------AUAGAAG	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s113_TRINITY_DN15801_c2_g1_106_TPlot.pdf
TRINITY_DN1580_c0_g1:1156	si_a647	TRINITY_DN1580_c0_g1	1145	1167	1156	-29.50	-20.90	0.708474576271186	10	2-6,1166-1162;7-19,1159-1147	1-1,1167-1167[UP5];x-x,1161-1160[BULt];20-21,1146-1145[UP3]	..(((((((((((((..(((((.&.)))))--)))))))))))))..	ACUUCCCGAUGUGUUCAAUUCAU&UUGAGU--AAUAUAUCGGGAAAU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN1580_c0_g1_1156_TPlot.pdf
TRINITY_DN1580_c0_g1:1158	si_a645	TRINITY_DN1580_c0_g1	1147	1169	1158	-29.40	-20.60	0.700680272108844	11.5	4-8,1166-1162;9-21,1159-1147	1-3,1169-1167[UP5];x-x,1161-1160[BULt]	(((((((((((((..(((((...&...)))))--)))))))))))))	UUCCCGAUGUGUUCAAUUCAUCU&UUUUGAGU--AAUAUAUCGGGAA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN1580_c0_g1_1158_TPlot.pdf
TRINITY_DN1580_c0_g1:2079	si_a629	TRINITY_DN1580_c0_g1	2068	2088	2079	-26.30	-17.50	0.665399239543726	12	1-12,2088-2077	13-21,2076-2068[UP3]	.........((((((((((((&)))))))))))).........	AAUAUGAUCCGACAUGGUGCG&CGUAUUAUGUCGAUUUUUUUG	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN1580_c0_g1_2079_TPlot.pdf
TRINITY_DN1580_c0_g1:3103	si_a497	TRINITY_DN1580_c0_g1	3092	3112	3103	-32.00	-21.60	0.675	9.5	3-6,3110-3107;8-19,3105-3094	1-2,3112-3111[UP5];7-7,3106-3106[SIL];20-21,3093-3092[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	AUGGAAGAUGAAGAUCGAUUC&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999999903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1580_c0_g1_3103_TPlot.pdf
TRINITY_DN1580_c0_g1:3313	si_s68	TRINITY_DN1580_c0_g1	3302	3322	3313	-23.10	-15.20	0.658008658008658	11	4-8,3319-3315;11-20,3312-3303	1-3,3322-3320[UP5];9-10,3314-3313[SIL];21-21,3302-3302[UP3]	.((((((((((..(((((...&...)))))..)))))))))).	CGAGAAAAGAAUGAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1580_c0_g1_3313_TPlot.pdf
TRINITY_DN1580_c0_g1:3376	si_a380	TRINITY_DN1580_c0_g1	3365	3385	3376	-24.00	-16.70	0.695833333333333	7	3-15,3383-3371;17-21,3369-3365	1-2,3385-3384[UP5];16-16,3370-3370[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GUUUUAGGUUCGAAAUCGUCA&AAAUGAUUUCGAAUUAAGAAU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN1580_c0_g1_3376_TPlot.pdf
TRINITY_DN1580_c0_g1:3394	si_s894	TRINITY_DN1580_c0_g1	3383	3403	3394	-29.10	-19.30	0.663230240549828	13	5-16,3399-3388	1-4,3403-3400[UP5];17-21,3387-3383[UP3]	.....((((((((((((....&....)))))))))))).....	UCACAGAAGAGAAAGCUCGAC&AAUAGGCUUUCUCUUCAAUUU	3	0.99999997413699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN1580_c0_g1_3394_TPlot.pdf
TRINITY_DN1580_c0_g1:3395	si_s893	TRINITY_DN1580_c0_g1	3384	3404	3395	-29.10	-19.30	0.663230240549828	14	6-17,3399-3388	1-5,3404-3400[UP5];18-21,3387-3384[UP3]	....((((((((((((.....&.....))))))))))))....	CACAGAAGAGAAAGCUCGACA&AAAUAGGCUUUCUCUUCAAUU	3	0.999999953479842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN1580_c0_g1_3395_TPlot.pdf
TRINITY_DN1580_c0_g1:3396	si_s892	TRINITY_DN1580_c0_g1	3385	3405	3396	-29.50	-19.30	0.654237288135593	15	7-18,3399-3388	1-6,3405-3400[UP5];19-21,3387-3385[UP3]	...((((((((((((......&......))))))))))))...	ACAGAAGAGAAAGCUCGACAG&UAAAUAGGCUUUCUCUUCAAU	3	0.999999734700928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN1580_c0_g1_3396_TPlot.pdf
TRINITY_DN1580_c0_g1:3397	si_s891	TRINITY_DN1580_c0_g1	3386	3406	3397	-29.60	-19.30	0.652027027027027	16	8-19,3399-3388	1-7,3406-3400[UP5];20-21,3387-3386[UP3]	..((((((((((((.......&.......))))))))))))..	CAGAAGAGAAAGCUCGACAGU&AUAAAUAGGCUUUCUCUUCAA	3	0.999998764302083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN1580_c0_g1_3397_TPlot.pdf
TRINITY_DN1580_c0_g1:3398	si_s890	TRINITY_DN1580_c0_g1	3387	3407	3398	-29.50	-19.30	0.654237288135593	17	9-20,3399-3388	1-8,3407-3400[UP5];21-21,3387-3387[UP3]	.((((((((((((........&........)))))))))))).	AGAAGAGAAAGCUCGACAGUA&AAUAAAUAGGCUUUCUCUUCA	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN1580_c0_g1_3398_TPlot.pdf
TRINITY_DN1580_c0_g1:3399	si_s889	TRINITY_DN1580_c0_g1	3388	3408	3399	-28.80	-18.80	0.652777777777778	18	10-21,3399-3388	1-9,3408-3400[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGAAAGCUCGACAGUAC&AAAUAAAUAGGCUUUCUCUUC	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN1580_c0_g1_3399_TPlot.pdf
TRINITY_DN15811_c0_g1:681	si_a636	TRINITY_DN15811_c0_g1	670	694	681	-26.30	-17.90	0.680608365019011	14	2-4,693-691;5-20,686-671	1-1,694-694[UP5];x-x,690-687[BULt];21-21,670-670[UP3]	.((((((((((((((((....(((.&.)))----)))))))))))))))).	AAUUACUCAGAAAGAUUAAGGGGCG&UGUC----GAUUUUUUUGAGUAAUA	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN15811_c0_g1_681_TPlot.pdf
TRINITY_DN15811_c0_g1:682	si_a635	TRINITY_DN15811_c0_g1	671	695	682	-26.10	-17.60	0.674329501915709	14.5	3-5,693-691;6-21,686-671	1-2,695-694[UP5];x-x,690-687[BULt]	((((((((((((((((....(((..&..)))----))))))))))))))))	AUUACUCAGAAAGAUUAAGGGGCGA&AUGUC----GAUUUUUUUGAGUAAU	4	0.999999992905205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN15811_c0_g1_682_TPlot.pdf
TRINITY_DN15811_c0_g1:873	si_a637	TRINITY_DN15811_c0_g1	862	885	873	-25.80	-17.20	0.666666666666667	11	1-7,885-879;8-16,875-867	x-x,878-876[BULt];17-21,866-862[UP3]	.....(((((((((...(((((((&)))))))---))))))))).....	CGAGCACUCAAAAAAGCAAUCGAC&GUCGAUU---UUUUUGAGUAAUAU	2	0.999993283641452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN15811_c0_g1_873_TPlot.pdf
TRINITY_DN15811_c0_g1:879	si_a634	TRINITY_DN15811_c0_g1	865	888	879	-26.40	-17.30	0.65530303030303	13	4-10,885-879;11-19,875-867	1-3,888-886[UP5];x-x,878-876[BULt];20-21,866-865[UP3]	..(((((((((...(((((((...&...)))))))---)))))))))..	GCACUCAAAAAAGCAAUCGACGAU&UAUGUCGAUU---UUUUUGAGUAA	2	0.999999669590304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN15811_c0_g1_879_TPlot.pdf
TRINITY_DN15811_c0_g1:881	si_a632	TRINITY_DN15811_c0_g1	867	890	881	-26.10	-17.10	0.655172413793103	15	6-12,885-879;13-21,875-867	1-5,890-886[UP5];x-x,878-876[BULt]	(((((((((...(((((((.....&.....)))))))---)))))))))	ACUCAAAAAAGCAAUCGACGAUAU&AUUAUGUCGAUU---UUUUUGAGU	4	0.999999999808535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN15811_c0_g1_881_TPlot.pdf
TRINITY_DN15811_c0_g1:945	si_s811	TRINITY_DN15811_c0_g1	934	954	945	-26.40	-17.90	0.678030303030303	9.5	1-4,954-951;6-16,949-939	5-5,950-950[SIL];17-21,938-934[UP3]	.....(((((((((((.((((&)))).))))))))))).....	GAAAAGAGAGAAGGUGUCGAA&UUCGUUACCUUUUCUUAAUAA	2	0.998547150004088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN15811_c0_g1_945_TPlot.pdf
TRINITY_DN15818_c1_g1:1807	si_a207	TRINITY_DN15818_c1_g1	1796	1817	1807	-23.90	-15.90	0.665271966527197	8.5	3-7,1815-1811;8-19,1809-1798	1-2,1817-1816[UP5];x-x,1810-1810[BULt];20-21,1797-1796[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	CGUUAAUUGGUCGAGUUUGUGC&UAAUAAA-UCGACUAAUUAAAC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a207_TRINITY_DN15818_c1_g1_1807_TPlot.pdf
TRINITY_DN15818_c2_g2:1359	si_s767	TRINITY_DN15818_c2_g2	1346	1369	1359	-28.10	-18.50	0.658362989323843	8.5	1-8,1369-1362;9-15,1360-1354;16-21,1351-1346	x-x,1361-1361[BULt];x-x,1353-1352[BULt]	((((((..(((((((.((((((((&))))))))-)))))))--))))))	GGUAGUUAAGUGGUUAGAUCGUUG&CAACGAUU-AAUUACU--AUUGCU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN15818_c2_g2_1359_TPlot.pdf
TRINITY_DN15819_c0_g1:148	si_s83	TRINITY_DN15819_c0_g1	137	157	148	-30.90	-24.20	0.783171521035599	5.5	2-7,156-151;9-21,149-137	1-1,157-157[UP5];8-8,150-150[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GAGGAAGAAGAAGAGGAAGAG&UUCUUUCCUUUCUUCUUCUUC	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN15819_c0_g1_148_TPlot.pdf
TRINITY_DN15819_c0_g1:174	si_s87	TRINITY_DN15819_c0_g1	161	184	174	-32.90	-23.50	0.714285714285714	8.5	1-9,184-176;10-17,174-167;18-21,164-161	x-x,175-175[BULt];x-x,166-165[BULt]	((((..((((((((.(((((((((&)))))))))-))))))))--))))	GAGCUUGAGGAAGAUGGAGAGGGG&UUCCUUUCU-UCUUCUUC--GCUU	2	0.999982704377475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN15819_c0_g1_174_TPlot.pdf
TRINITY_DN15819_c0_g1:180	si_a786	TRINITY_DN15819_c0_g1	169	188	180	-26.60	-21.40	0.804511278195489	9	1-6,188-183;9-21,181-169	7-8,182-182[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GGAAGAUGGAGAGG-GGGAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN15819_c0_g1_180_TPlot.pdf
TRINITY_DN15819_c0_g1:214	si_s83	TRINITY_DN15819_c0_g1	200	223	214	-30.90	-22.50	0.728155339805825	9.5	1-8,223-216;11-16,213-208;17-21,204-200	9-10,215-214[SIL];x-x,207-205[BULt]	(((((...((((((..((((((((&))))))))..))))))---)))))	GAAGAGACAGAGGAUUGGGAGGAA&UUCUUUCCUUUCUUCU---UCUUC	3	0.999999997855688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN15819_c0_g1_214_TPlot.pdf
TRINITY_DN15819_c0_g1:215	si_s82	TRINITY_DN15819_c0_g1	203	224	215	-28.90	-20.90	0.72318339100346	9	2-9,223-216;12-17,213-208;18-21,206-203	1-1,224-224[UP5];10-11,215-214[SIL];x-x,207-207[BULt]	((((.((((((..((((((((.&.))))))))..))))))-))))	GAGACAGAGGAUUGGGAGGAAG&UUUCUUUCCUUUCUUCU-UCUU	2	0.999999994891665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN15819_c0_g1_215_TPlot.pdf
TRINITY_DN15819_c0_g1:74	si_s88	TRINITY_DN15819_c0_g1	62	93	74	-34.80	-24.90	0.71551724137931	22.5	1-5,93-89;6-17,78-67;18-21,65-62	x-x,88-79[BULt];x-x,66-66[BULt]	((((.((((((((((((..........(((((&)))))----------))))))))))))-))))	GAAGACGAGGAAGAAGAGCCUGAGAUUGAGGA&UCCUU----------UCUUCUUCUUCG-CUUC	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN15819_c0_g1_74_TPlot.pdf
TRINITY_DN1581_c0_g1:1840	si_a140	TRINITY_DN1581_c0_g1	1829	1849	1840	-25.20	-18.00	0.714285714285714	8	1-5,1849-1845;8-19,1842-1831	6-7,1844-1843[SIL];20-21,1830-1829[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	GUGACAACGAUGAUAUAUUAC&GUAAUUAAUCGUUGUUGUUUU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN1581_c0_g1_1840_TPlot.pdf
TRINITY_DN1581_c0_g1:1999	si_a321	TRINITY_DN1581_c0_g1	1988	2008	1999	-26.70	-17.60	0.659176029962547	9.5	5-20,2004-1989	1-4,2008-2005[UP5];21-21,1988-1988[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAAUAAGAAAAUCGUGUUCG&UAUCCAUGAUUUUUUUAUUCC	2	0.998922310314455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1581_c0_g1_1999_TPlot.pdf
TRINITY_DN1581_c0_g1:2196	si_s82	TRINITY_DN1581_c0_g1	2185	2206	2196	-28.90	-21.50	0.743944636678201	6	1-8,2206-2199;10-21,2196-2185	9-9,2198-2197[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	GAGAAGAGGAAAUUGAAGGAAA&UUUCUUUC-CUUUCUUCUUCUU	4	0.999999999651607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1581_c0_g1_2196_TPlot.pdf
TRINITY_DN1581_c0_g1:2197	si_s81	TRINITY_DN1581_c0_g1	2186	2207	2197	-28.90	-21.30	0.737024221453287	5.5	1-9,2207-2199;11-21,2196-2186	10-10,2198-2197[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	AGAAGAGGAAAUUGAAGGAAAA&UUUUCUUUC-CUUUCUUCUUCU	2	0.999999742399378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1581_c0_g1_2197_TPlot.pdf
TRINITY_DN1581_c0_g1:2225	si_s808	TRINITY_DN1581_c0_g1	2214	2235	2225	-28.60	-19.70	0.688811188811189	10	2-9,2234-2227;11-19,2224-2216	1-1,2235-2235[UP5];10-10,2226-2225[AILt];20-21,2215-2214[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	GCAAGAAAAGGAGGAUGAGGAG&AUCUUCGUU-ACCUUUUCUUAA	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1581_c0_g1_2225_TPlot.pdf
TRINITY_DN1581_c0_g1:2229	si_s805	TRINITY_DN1581_c0_g1	2217	2238	2229	-28.60	-19.00	0.664335664335664	9	1-3,2238-2236;5-12,2234-2227;14-21,2224-2217	4-4,2235-2235[SIL];13-13,2226-2225[AILt]	((((((((..((((((((.(((&))).))))))))-.))))))))	AGAAAAGGAGGAUGAGGAGGAA&UUUAUCUUCGUU-ACCUUUUCU	2	0.999999267189669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1581_c0_g1_2229_TPlot.pdf
TRINITY_DN1581_c0_g1:2343	si_s83	TRINITY_DN1581_c0_g1	2329	2355	2343	-30.90	-20.30	0.656957928802589	11.5	2-6,2354-2350;7-13,2346-2340;14-21,2336-2329	1-1,2355-2355[UP5];x-x,2349-2347[BULt];x-x,2339-2337[BULt]	((((((((...(((((((...(((((.&.)))))---)))))))---))))))))	GAAGAGGAAAUAGAGAGGUUAAAAGAC&UUCUUU---CCUUUCU---UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1581_c0_g1_2343_TPlot.pdf
TRINITY_DN1581_c0_g1:2424	si_s76	TRINITY_DN1581_c0_g1	2413	2433	2424	-23.60	-18.20	0.771186440677966	7.5	2-11,2432-2423;14-21,2420-2413	1-1,2433-2433[UP5];12-13,2422-2421[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AAGAAGGGUCAGAAGAGGAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999999871692969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1581_c0_g1_2424_TPlot.pdf
TRINITY_DN1581_c0_g1:2433	si_s82	TRINITY_DN1581_c0_g1	2422	2445	2433	-28.90	-19.10	0.660899653979239	9.5	2-5,2444-2441;6-8,2438-2436;9-20,2434-2423	1-1,2445-2445[UP5];x-x,2440-2439[BULt];x-x,2435-2435[BULt];21-21,2422-2422[UP3]	.((((((((((((.(((..((((.&.))))--)))-)))))))))))).	CAGAAGAGGAAAGCGGAAAAGAAU&UUUCU--UUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1581_c0_g1_2433_TPlot.pdf
TRINITY_DN1581_c0_g1:2440	si_s73	TRINITY_DN1581_c0_g1	2426	2450	2440	-24.00	-16.60	0.691666666666667	7	1-5,2450-2446;6-14,2444-2436;15-21,2432-2426	x-x,2445-2445[BULt];x-x,2435-2433[BULt]	(((((((...(((((((((.(((((&)))))-)))))))))---)))))))	AGAGGAAAGCGGAAAAGAAUAUAGA&UCUAU-UUUUUUUCU---UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1581_c0_g1_2440_TPlot.pdf
TRINITY_DN1581_c0_g1:2441	si_s72	TRINITY_DN1581_c0_g1	2427	2451	2441	-24.10	-16.00	0.663900414937759	8	2-6,2450-2446;7-15,2444-2436;16-21,2432-2427	1-1,2451-2451[UP5];x-x,2445-2445[BULt];x-x,2435-2433[BULt]	((((((...(((((((((.(((((.&.)))))-)))))))))---))))))	GAGGAAAGCGGAAAAGAAUAUAGAU&UUCUAU-UUUUUUUCU---UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1581_c0_g1_2441_TPlot.pdf
TRINITY_DN15821_c0_g1:2041	si_s70	TRINITY_DN15821_c0_g1	2030	2050	2041	-25.80	-17.08	0.662015503875969	11.5	2-6,2049-2045;10-21,2041-2030	1-1,2050-2050[UP5];7-9,2044-2042[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	GGAAAGAGAGGGCCCGGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN15821_c0_g1_2041_TPlot.pdf
TRINITY_DN15821_c0_g1:2692	si_s431	TRINITY_DN15821_c0_g1	2681	2701	2692	-21.10	-15.70	0.744075829383886	7.5	2-11,2700-2691;14-19,2688-2683	1-1,2701-2701[UP5];12-13,2690-2689[SIL];20-21,2682-2681[UP3]	..((((((..((((((((((.&.))))))))))..))))))..	AAAGUAUGGUAUUGUUGUUAG&AUAACAAUAAUUACAUAUUAU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN15821_c0_g1_2692_TPlot.pdf
TRINITY_DN1582_c0_g1:1566	si_s877	TRINITY_DN1582_c0_g1	1555	1574	1566	-22.80	-14.90	0.653508771929825	5	1-8,1574-1567;10-19,1566-1557	9-9,x-x[BULq];20-21,1556-1555[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	CUUUUAUUUUUA-UUCUGAGA&UCUUAGAACUAAAAAUAAAUA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s877_TRINITY_DN1582_c0_g1_1566_TPlot.pdf
TRINITY_DN15830_c1_g1:1394	si_s188	TRINITY_DN15830_c1_g1	1383	1403	1394	-28.20	-19.20	0.680851063829787	7	1-7,1403-1397;10-21,1394-1383	8-9,1396-1395[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AUUCCGAAAUGGAAGUUACUU&GAGUAACGAUUAUUUUGGAAU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN15830_c1_g1_1394_TPlot.pdf
TRINITY_DN15830_c1_g1:1519	si_s1	TRINITY_DN15830_c1_g1	1508	1528	1519	-18.70	-12.70	0.679144385026738	7	2-15,1527-1514	1-1,1528-1528[UP5];16-21,1513-1508[UP3]	......((((((((((((((.&.))))))))))))))......	UUUUUUUAAGUAAUAUAAAAU&UUUUUAUAUUACUUAUUAUUA	3	0.999999962005284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN15830_c1_g1_1519_TPlot.pdf
TRINITY_DN15830_c1_g1:1884	si_s9	TRINITY_DN15830_c1_g1	1872	1892	1884	-22.90	-15.70	0.685589519650655	6	1-5,1892-1888;7-16,1887-1878;17-21,1876-1872	6-6,x-x[BULq];x-x,1877-1877[BULt]	(((((.((((((((((-(((((&))))).))))))))))-)))))	CAGUACUAGUAGUAGU-AGUAG&UUACUUAUUAUUACUA-UAUUG	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN15830_c1_g1_1884_TPlot.pdf
TRINITY_DN15830_c1_g1:1886	si_s774	TRINITY_DN15830_c1_g1	1875	1895	1886	-24.70	-16.10	0.651821862348178	11.5	3-16,1893-1880	1-2,1895-1894[UP5];17-21,1879-1875[UP3]	.....((((((((((((((..&..)))))))))))))).....	UACUAGUAGUAGUAGUAGUAU&UAAUUACUAUUGCUAUAAAAC	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN15830_c1_g1_1886_TPlot.pdf
TRINITY_DN15830_c1_g1:1888	si_s4	TRINITY_DN15830_c1_g1	1878	1897	1888	-21.60	-17.40	0.805555555555555	5	2-10,1896-1888;12-21,1887-1878	1-1,1897-1897[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	UAGUAGUAGU-AGUAGUAUAU&UUAUAUUACUUAUUAUUACUA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN15830_c1_g1_1888_TPlot.pdf
TRINITY_DN15830_c3_g1:449	si_s84	TRINITY_DN15830_c3_g1	437	460	449	-32.30	-21.20	0.656346749226006	12	1-5,460-456;6-10,453-449;11-20,447-438	x-x,455-454[BULt];x-x,448-448[BULt];21-21,437-437[UP3]	.((((((((((.(((((..(((((&)))))--)))))-)))))))))).	AGGGGAAGAGGCAGAGGGCGAGGA&UCUUU--CCUUU-CUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN15830_c3_g1_449_TPlot.pdf
TRINITY_DN15830_c3_g1:450	si_s83	TRINITY_DN15830_c3_g1	438	460	450	-30.90	-22.10	0.715210355987055	9.5	1-5,460-456;6-11,454-449;12-21,447-438	x-x,455-455[BULt];x-x,448-448[BULt]	((((((((((.((((((.(((((&)))))-))))))-))))))))))	GGGGAAGAGGCAGAGGGCGAGGA&UUCUU-UCCUUU-CUUCUUCUUC	4	0.999999999992958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN15830_c3_g1_450_TPlot.pdf
TRINITY_DN15839_c1_g1:171	si_s382	TRINITY_DN15839_c1_g1	160	180	171	-41.70	-28.20	0.676258992805755	10	5-9,176-172;11-21,170-160	1-4,180-177[UP5];10-10,171-171[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GGGAUGUAGGGGGGACAAAUA&CGCGUGUCCGCCUUACAUUCC	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s382_TRINITY_DN15839_c1_g1_171_TPlot.pdf
TRINITY_DN1583_c0_g1:423	si_a783	TRINITY_DN1583_c0_g1	412	432	423	-24.70	-16.10	0.651821862348178	12	4-16,429-417;19-21,414-412	1-3,432-430[UP5];17-18,416-415[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	GAAGUGAGAGGUGGAGGAAGA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1583_c0_g1_423_TPlot.pdf
TRINITY_DN1583_c0_g1:672	si_a771	TRINITY_DN1583_c0_g1	653	681	672	-29.40	-19.30	0.656462585034014	11	1-13,681-669;14-21,660-653	x-x,668-661[BULt]	((((((((........(((((((((((((&)))))))))))))--------))))))))	AGAAGAGUUACAUUGAUGAAUUAGUUAAA&UUUGAUUGAUUCA--------ACUCUUCU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN1583_c0_g1_672_TPlot.pdf
TRINITY_DN15856_c0_g1:829	si_s439	TRINITY_DN15856_c0_g1	817	838	829	-21.50	-15.60	0.725581395348837	6	1-11,838-828;14-21,824-817	12-13,827-825[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	UGUUAUAUUAAAAUAUGUGAUU&AAUUACAUAUU-AUAUAUAACA	0	0.0511752716466973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN15856_c0_g1_829_TPlot.pdf
TRINITY_DN15856_c0_g1:830	si_s438	TRINITY_DN15856_c0_g1	818	839	830	-21.20	-15.30	0.721698113207547	5	1-12,839-828;15-21,824-818	13-14,827-825[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	GUUAUAUUAAAAUAUGUGAUUA&UAAUUACAUAUU-AUAUAUAAC	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN15856_c0_g1_830_TPlot.pdf
TRINITY_DN15856_c0_g1:831	si_s437	TRINITY_DN15856_c0_g1	819	840	831	-19.70	-13.70	0.695431472081218	4	1-13,840-828;16-21,824-819	14-15,827-825[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	UUAUAUUAAAAUAUGUGAUUAU&AUAAUUACAUAUU-AUAUAUAA	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN15856_c0_g1_831_TPlot.pdf
TRINITY_DN15856_c0_g3:2560	si_a317	TRINITY_DN15856_c0_g3	2549	2569	2560	-24.30	-16.70	0.687242798353909	4.5	1-7,2569-2563;9-21,2561-2549	8-8,2562-2562[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	UAAGGAAAUCAUGCAUGAAUU&GAUUUAUCCAUGAUUUUUUUA	3	0.999998789065877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN15856_c0_g3_2560_TPlot.pdf
TRINITY_DN15864_c0_g1:252	si_a172	TRINITY_DN15864_c0_g1	241	261	252	-31.90	-22.50	0.705329153605016	10	3-17,259-245	1-2,261-260[UP5];18-21,244-241[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCACUGUUUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN15864_c0_g1_252_TPlot.pdf
TRINITY_DN15864_c0_g1:253	si_a171	TRINITY_DN15864_c0_g1	242	262	253	-32.10	-22.50	0.700934579439252	10.5	4-18,259-245	1-3,262-260[UP5];19-21,244-242[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACUGUUUGGAUGGGUGACCG&UAUUCACCCGUCUAGAUAAUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN15864_c0_g1_253_TPlot.pdf
TRINITY_DN15864_c0_g1:256	si_a168	TRINITY_DN15864_c0_g1	245	273	256	-34.40	-23.00	0.668604651162791	19	2-6,272-268;7-21,259-245	1-1,273-273[UP5];x-x,267-260[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUUUGGAUGGGUGACCGAGCUUAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN15864_c0_g1_256_TPlot.pdf
TRINITY_DN15864_c1_g1:71	si_s172	TRINITY_DN15864_c1_g1	60	80	71	-40.30	-28.90	0.71712158808933	9	4-20,77-61	1-3,80-78[UP5];21-21,60-60[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGCUUGGGCAUUUUUGCCAUA&AGGGGUAAAGAUGCCCGAGUA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s172_TRINITY_DN15864_c1_g1_71_TPlot.pdf
TRINITY_DN15885_c0_g1:67	si_a763	TRINITY_DN15885_c0_g1	56	76	67	-28.80	-19.20	0.666666666666667	10.5	5-14,72-63;16-20,61-57	1-4,76-73[UP5];15-15,62-62[SIL];21-21,56-56[UP3]	.(((((.((((((((((....&....)))))))))).))))).	AGAGUCCAUCAGAAACCAGCA&UUUGGGUUUUUGAUUGAUUCA	4	0.999999996335082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN15885_c0_g1_67_TPlot.pdf
TRINITY_DN15889_c0_g1:163	si_a639	TRINITY_DN15889_c0_g1	152	174	163	-23.60	-16.40	0.694915254237288	10	1-9,174-166;10-19,163-154	x-x,165-164[BULt];20-21,153-152[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	UGAUAUUACUCAUGAGGAGAUUG&CGAUUUUUU--UGAGUAAUAUAU	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN15889_c0_g1_163_TPlot.pdf
TRINITY_DN15890_c0_g1:266	si_a68	TRINITY_DN15890_c0_g1	255	276	266	-25.40	-16.70	0.65748031496063	12	1-7,276-270;12-21,264-255	8-11,269-265[AILt]	((((((((((.....(((((((&)))))))-....))))))))))	UGAAGAGCAAGUUAAGAAGAAG&CUUCUUU-CAAAUUGUUUUUCA	3	0.99999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN15890_c0_g1_266_TPlot.pdf
TRINITY_DN15897_c0_g2:851	si_a457	TRINITY_DN15897_c0_g2	839	860	851	-23.50	-17.00	0.723404255319149	4	1-16,860-845;17-19,843-841	x-x,844-844[BULt];20-21,840-839[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	UGGUGUUUAUAUAUAACAACAA&UUGUUGUUAUAUAUAA-UAUGU	0	0.0401942479282396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN15897_c0_g2_851_TPlot.pdf
TRINITY_DN15897_c0_g2:852	si_a456	TRINITY_DN15897_c0_g2	840	861	852	-22.80	-17.00	0.745614035087719	4	2-17,860-845;18-20,843-841	1-1,861-861[UP5];x-x,844-844[BULt];21-21,840-840[UP3]	.(((.((((((((((((((((.&.))))))))))))))))-))).	GGUGUUUAUAUAUAACAACAAC&AUUGUUGUUAUAUAUAA-UAUG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN15897_c0_g2_852_TPlot.pdf
TRINITY_DN15897_c0_g2:853	si_a455	TRINITY_DN15897_c0_g2	842	862	853	-21.10	-17.00	0.805687203791469	6	3-18,860-845	1-2,862-861[UP5];19-21,844-842[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGUUUAUAUAUAACAACAACA&AAUUGUUGUUAUAUAUAAUAU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN15897_c0_g2_853_TPlot.pdf
TRINITY_DN15897_c0_g2:854	si_a454	TRINITY_DN15897_c0_g2	843	863	854	-21.30	-17.00	0.7981220657277	7	4-19,860-845	1-3,863-861[UP5];20-21,844-843[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUUUAUAUAUAACAACAACAA&UAAUUGUUGUUAUAUAUAAUA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN15897_c0_g2_854_TPlot.pdf
TRINITY_DN158_c0_g1:2033	si_a303	TRINITY_DN158_c0_g1	2022	2044	2033	-28.40	-19.50	0.686619718309859	14	5-9,2040-2036;10-21,2033-2022	1-4,2044-2041[UP5];x-x,2035-2034[BULt]	((((((((((((..(((((....&....)))))--))))))))))))	AUGAGUCCAAGCACGGGUCCUUG&AAAAGAUUC--GCUUGGAUUUAU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN158_c0_g1_2033_TPlot.pdf
TRINITY_DN158_c0_g1:2500	si_s88	TRINITY_DN158_c0_g1	2488	2512	2500	-34.80	-24.80	0.71264367816092	9.5	1-6,2512-2507;7-17,2503-2493;18-21,2491-2488	x-x,2506-2504[BULt];x-x,2492-2492[BULt]	((((.(((((((((((...((((((&))))))---)))))))))))-))))	GAAGAUGAAGGAGAAGUAAGAAGGA&UCCUUU---CUUCUUCUUCG-CUUC	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN158_c0_g1_2500_TPlot.pdf
TRINITY_DN158_c0_g1:2596	si_s683	TRINITY_DN158_c0_g1	2585	2605	2596	-27.00	-23.00	0.851851851851852	3	2-21,2604-2585	1-1,2605-2605[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AUUAGUUAAACUUAUGUUUCA&AGAAACAUGAGUUUAAUUAGU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s683_TRINITY_DN158_c0_g1_2596_TPlot.pdf
TRINITY_DN158_c0_g1:2598	si_s681	TRINITY_DN158_c0_g1	2587	2607	2598	-25.10	-21.10	0.840637450199203	6.5	4-21,2604-2587	1-3,2607-2605[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAGUUAAACUUAUGUUUCAAC&AUAGAAACAUGAGUUUAAUUA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN158_c0_g1_2598_TPlot.pdf
TRINITY_DN158_c0_g1:2879	si_a326	TRINITY_DN158_c0_g1	2868	2888	2879	-26.20	-17.80	0.679389312977099	5.5	1-16,2888-2873;18-19,2871-2870;21-21,2868-2868	17-17,2872-2872[SIL];20-20,2869-2869[SIL]	(.((.((((((((((((((((&)))))))))))))))).)).)	GUCAUGGAGUGGAAAAAUUAU&AUGAUUUUUUUAUUCCUUGUC	3	0.999999559920985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN158_c0_g1_2879_TPlot.pdf
TRINITY_DN1590_c0_g4:29	si_s480	TRINITY_DN1590_c0_g4	18	40	29	-25.00	-17.00	0.68	12	1-4,40-37;5-17,34-22	x-x,36-35[BULt];18-21,21-18[UP3]	....(((((((((((((..((((&))))--)))))))))))))....	AUGCAGAUGGAUGUAGGCAGUCC&GGAU--CCUAUAUUUAUUUAAAU	1	0.0585810189711744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN1590_c0_g4_29_TPlot.pdf
TRINITY_DN15916_c0_g1:132	si_a825	TRINITY_DN15916_c0_g1	121	141	132	-24.00	-17.90	0.745833333333333	4	1-19,141-123	20-21,122-121[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUUUUUUUUCUUUCUUUUUU&AGAAAGGAAAGAAAAAAAAUA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a825_TRINITY_DN15916_c0_g1_132_TPlot.pdf
TRINITY_DN1591_c0_g1:1891	si_a127	TRINITY_DN1591_c0_g1	1880	1901	1891	-23.10	-15.50	0.670995670995671	9.5	4-8,1898-1894;9-21,1892-1880	1-3,1901-1899[UP5];x-x,1893-1893[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	UUGAUUACUAUUGAUUGUAUUU&UUUUAUAG-CAAUAGUAAUUAA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN1591_c0_g1_1891_TPlot.pdf
TRINITY_DN1591_c0_g1:304	si_a215	TRINITY_DN1591_c0_g1	293	313	304	-27.80	-18.56	0.667625899280575	10	1-4,313-310;9-20,305-294	5-8,309-306[SIL];21-21,293-293[UP3]	.((((((((((((....((((&))))....)))))))))))).	CAACAUGAGUUUAUAUUGUUG&CGACUAAUUAAACUCAUGUUU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a215_TRINITY_DN1591_c0_g1_304_TPlot.pdf
TRINITY_DN1591_c0_g1:305	si_a214	TRINITY_DN1591_c0_g1	294	314	305	-28.80	-18.76	0.651388888888889	9.5	1-5,314-310;10-21,305-294	6-9,309-306[SIL]	((((((((((((....(((((&)))))....))))))))))))	AACAUGAGUUUAUAUUGUUGG&UCGACUAAUUAAACUCAUGUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a214_TRINITY_DN1591_c0_g1_305_TPlot.pdf
TRINITY_DN1591_c0_g1:345	si_a796	TRINITY_DN1591_c0_g1	335	354	345	-32.70	-22.10	0.675840978593272	6	2-6,353-349;8-16,347-339;19-21,337-335	1-1,354-354[UP5];7-7,348-348[SIL];17-18,338-338[AILq]	(((.-(((((((((.(((((.&.))))).)))))))))..)))	GCUA-GGAUUGGGAUAUAGAU&UUCUAUUUUCCAAUCCGAAGC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN1591_c0_g1_345_TPlot.pdf
TRINITY_DN1591_c0_g1:347	si_a794	TRINITY_DN1591_c0_g1	336	356	347	-28.60	-18.90	0.660839160839161	11	4-8,353-349;10-18,347-339	1-3,356-354[UP5];9-9,348-348[SIL];19-21,338-336[UP3]	...(((((((((.(((((...&...))))).)))))))))...	CUAGGAUUGGGAUAUAGAUCU&UUUUCUAUUUUCCAAUCCGAA	2	0.998565120328725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1591_c0_g1_347_TPlot.pdf
TRINITY_DN1591_c0_g1:350	si_a791	TRINITY_DN1591_c0_g1	339	359	350	-26.50	-18.50	0.69811320754717	13.5	7-11,353-349;13-21,347-339	1-6,359-354[UP5];12-12,348-348[SIL]	(((((((((.(((((......&......))))).)))))))))	GGAUUGGGAUAUAGAUCUGAU&UAUUUUUCUAUUUUCCAAUCC	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1591_c0_g1_350_TPlot.pdf
TRINITY_DN1592_c0_g1:13965	si_a164	TRINITY_DN1592_c0_g1	13953	13975	13965	-35.60	-23.20	0.651685393258427	13	1-3,13975-13973;6-15,13969-13960;16-21,13958-13953	4-5,13972-13970[AILt];x-x,13959-13959[BULt]	((((((.((((((((((...(((&)))-..))))))))))-))))))	UGGGCGCGGUGGGUGGGAAGGGC&GUC-AAUCUAUUCACC-CGUCUA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a164_TRINITY_DN1592_c0_g1_13965_TPlot.pdf
TRINITY_DN1592_c0_g1:14375	si_s692	TRINITY_DN1592_c0_g1	14364	14384	14375	-24.20	-18.80	0.776859504132231	7.5	1-6,14384-14379;8-18,14377-14367	7-7,14378-14378[SIL];19-21,14366-14364[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	AUCAAGUCGACUGAGUAGACU&AGUUUAAUUAGUCGAUUUAUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN1592_c0_g1_14375_TPlot.pdf
TRINITY_DN1592_c0_g1:14376	si_s691	TRINITY_DN1592_c0_g1	14365	14385	14376	-26.20	-19.20	0.732824427480916	7.5	2-7,14384-14379;9-19,14377-14367	1-1,14385-14385[UP5];8-8,14378-14378[SIL];20-21,14366-14365[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	UCAAGUCGACUGAGUAGACUG&GAGUUUAAUUAGUCGAUUUAU	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN1592_c0_g1_14376_TPlot.pdf
TRINITY_DN1592_c0_g1:14377	si_s690	TRINITY_DN1592_c0_g1	14366	14386	14377	-26.70	-19.20	0.719101123595506	8.5	3-8,14384-14379;10-20,14377-14367	1-2,14386-14385[UP5];9-9,14378-14378[SIL];21-21,14366-14366[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	CAAGUCGACUGAGUAGACUGC&UGAGUUUAAUUAGUCGAUUUA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN1592_c0_g1_14377_TPlot.pdf
TRINITY_DN1592_c0_g1:14461	si_a573	TRINITY_DN1592_c0_g1	14450	14471	14461	-28.70	-18.70	0.651567944250871	11.5	5-9,14467-14463;10-20,14461-14451	1-4,14471-14468[UP5];x-x,14462-14462[BULt];21-21,14450-14450[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	AUGUUACGAACAGUGCGAGAGA&UGAAUCGUA-UGUUUGUAACAA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN1592_c0_g1_14461_TPlot.pdf
TRINITY_DN1592_c0_g1:14467	si_a65	TRINITY_DN1592_c0_g1	14456	14476	14467	-27.70	-19.80	0.714801444043321	9	3-11,14474-14466;14-20,14463-14457	1-2,14476-14475[UP5];12-13,14465-14464[SIL];21-21,14456-14456[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	CGAACAGUGCGAGAGAAGCUG&UCGCUUCUUUCAAAUUGUUUU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN1592_c0_g1_14467_TPlot.pdf
TRINITY_DN1592_c0_g1:14469	si_a63	TRINITY_DN1592_c0_g1	14458	14479	14469	-30.20	-21.90	0.725165562913907	6.5	2-4,14478-14476;5-13,14474-14466;16-21,14463-14458	1-1,14479-14479[UP5];x-x,14475-14475[BULt];14-15,14465-14464[SIL]	((((((..(((((((((.(((.&.)))-)))))))))..))))))	AACAGUGCGAGAGAAGCUGAGG&ACUC-GCUUCUUUCAAAUUGUU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN1592_c0_g1_14469_TPlot.pdf
TRINITY_DN1592_c0_g1:14470	si_a62	TRINITY_DN1592_c0_g1	14459	14480	14470	-32.20	-21.00	0.652173913043478	8.5	3-5,14478-14476;6-14,14474-14466;17-21,14463-14459	1-2,14480-14479[UP5];x-x,14475-14475[BULt];15-16,14465-14464[SIL]	(((((..(((((((((.(((..&..)))-)))))))))..)))))	ACAGUGCGAGAGAAGCUGAGGU&GACUC-GCUUCUUUCAAAUUGU	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN1592_c0_g1_14470_TPlot.pdf
TRINITY_DN1592_c0_g1:3400	si_a498	TRINITY_DN1592_c0_g1	3390	3409	3400	-33.50	-22.70	0.677611940298507	6.5	1-12,3409-3398;14-21,3397-3390	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	CAAGGGAG-UGAGAAGUGGCA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999996296038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1592_c0_g1_3400_TPlot.pdf
TRINITY_DN1592_c0_g1:3908	si_s467	TRINITY_DN1592_c0_g1	3891	3917	3908	-36.60	-24.04	0.656830601092896	20	1-10,3917-3908;13-20,3899-3892	11-12,3907-3900[AILt];21-21,3891-3891[UP3]	.((((((((........((((((((((&))))))))))------..)))))))).	AAGGGUCCGCUGCUUCAGGGUGUGAGG&UCUCAUAUCC------AACGGAUCCUA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s467_TRINITY_DN1592_c0_g1_3908_TPlot.pdf
TRINITY_DN1592_c0_g1:4002	si_a635	TRINITY_DN1592_c0_g1	3991	4011	4002	-26.10	-17.20	0.659003831417624	11	2-10,4010-4002;12-17,4000-3995	1-1,4011-4011[UP5];11-11,4001-4001[SIL];18-21,3994-3991[UP3]	....((((((.(((((((((.&.))))))))).))))))....	UCGCCUCGGACGAGUCGGCAA&AUGUCGAUUUUUUUGAGUAAU	3	0.999999999998473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1592_c0_g1_4002_TPlot.pdf
TRINITY_DN1592_c0_g1:4003	si_a634	TRINITY_DN1592_c0_g1	3992	4012	4003	-26.40	-17.20	0.651515151515151	12	3-11,4010-4002;13-18,4000-3995	1-2,4012-4011[UP5];12-12,4001-4001[SIL];19-21,3994-3992[UP3]	...((((((.(((((((((..&..))))))))).))))))...	CGCCUCGGACGAGUCGGCAAC&UAUGUCGAUUUUUUUGAGUAA	4	0.999999999996786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1592_c0_g1_4003_TPlot.pdf
TRINITY_DN1592_c0_g1:4008	si_a844	TRINITY_DN1592_c0_g1	3997	4017	4008	-29.20	-19.60	0.671232876712329	10.5	3-11,4015-4007;13-17,4005-4001	1-2,4017-4016[UP5];12-12,4006-4006[SIL];18-21,4000-3997[UP3]	....(((((.(((((((((..&..))))))))).)))))....	CGGACGAGUCGGCAACUUCGC&UAGAAGUUGCUAACUUGAAAU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN1592_c0_g1_4008_TPlot.pdf
TRINITY_DN1592_c0_g1:4009	si_a843	TRINITY_DN1592_c0_g1	3998	4018	4009	-29.30	-19.60	0.668941979522184	10.5	4-12,4015-4007;14-18,4005-4001	1-3,4018-4016[UP5];13-13,4006-4006[SIL];19-21,4000-3998[UP3]	...(((((.(((((((((...&...))))))))).)))))...	GGACGAGUCGGCAACUUCGCU&AUAGAAGUUGCUAACUUGAAA	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a843_TRINITY_DN1592_c0_g1_4009_TPlot.pdf
TRINITY_DN1592_c0_g1:4011	si_a841	TRINITY_DN1592_c0_g1	4000	4020	4011	-29.20	-19.60	0.671232876712329	12	6-14,4015-4007;16-20,4005-4001	1-5,4020-4016[UP5];15-15,4006-4006[SIL];21-21,4000-4000[UP3]	.(((((.(((((((((.....&.....))))))))).))))).	ACGAGUCGGCAACUUCGCUGG&AAAUAGAAGUUGCUAACUUGA	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN1592_c0_g1_4011_TPlot.pdf
TRINITY_DN1592_c0_g1:4190	si_a557	TRINITY_DN1592_c0_g1	4179	4199	4190	-33.40	-22.48	0.673053892215569	10.5	1-4,4199-4196;8-18,4192-4182	5-7,4195-4193[SIL];19-21,4181-4179[UP3]	...(((((((((((...((((&))))...)))))))))))...	AAGCACGGGGGGAUCUUGAAG&UUUCUUUAUCUCCCCGUGAAU	2	0.967779006855436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN1592_c0_g1_4190_TPlot.pdf
TRINITY_DN1592_c0_g1:4191	si_a556	TRINITY_DN1592_c0_g1	4180	4200	4191	-33.40	-24.08	0.720958083832335	10	1-5,4200-4196;9-19,4192-4182	6-8,4195-4193[SIL];20-21,4181-4180[UP3]	..(((((((((((...(((((&)))))...)))))))))))..	AGCACGGGGGGAUCUUGAAGU&AUUUCUUUAUCUCCCCGUGAA	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN1592_c0_g1_4191_TPlot.pdf
TRINITY_DN1592_c0_g1:4192	si_a555	TRINITY_DN1592_c0_g1	4181	4201	4192	-33.70	-25.18	0.747181008902077	8.5	1-6,4201-4196;10-20,4192-4182	7-9,4195-4193[SIL];21-21,4181-4181[UP3]	.(((((((((((...((((((&))))))...))))))))))).	GCACGGGGGGAUCUUGAAGUA&UAUUUCUUUAUCUCCCCGUGA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN1592_c0_g1_4192_TPlot.pdf
TRINITY_DN1592_c0_g1:4193	si_a554	TRINITY_DN1592_c0_g1	4182	4202	4193	-34.40	-25.18	0.731976744186047	8.5	2-7,4201-4196;11-21,4192-4182	1-1,4202-4202[UP5];8-10,4195-4193[SIL]	(((((((((((...((((((.&.))))))...)))))))))))	CACGGGGGGAUCUUGAAGUAU&CUAUUUCUUUAUCUCCCCGUG	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN1592_c0_g1_4193_TPlot.pdf
TRINITY_DN1592_c0_g1:4194	si_a553	TRINITY_DN1592_c0_g1	4183	4203	4194	-33.70	-22.08	0.655192878338279	10.5	3-8,4201-4196;12-21,4192-4183	1-2,4203-4202[UP5];9-11,4195-4193[SIL]	((((((((((...((((((..&..))))))...))))))))))	ACGGGGGGAUCUUGAAGUAUG&UCUAUUUCUUUAUCUCCCCGU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN1592_c0_g1_4194_TPlot.pdf
TRINITY_DN1592_c0_g1:4251	si_a738	TRINITY_DN1592_c0_g1	4240	4260	4251	-40.10	-26.10	0.650872817955112	7.5	1-5,4260-4256;7-10,4254-4251;12-18,4249-4243	6-6,4255-4255[SIL];11-11,4250-4250[SIL];19-21,4242-4240[UP3]	...(((((((.((((.(((((&))))).)))).)))))))...	AGACAUGGCCUGGGGAAAAGG&UCUUUACCCCUGGCCAUGAAC	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a738_TRINITY_DN1592_c0_g1_4251_TPlot.pdf
TRINITY_DN1592_c0_g1:4252	si_a737	TRINITY_DN1592_c0_g1	4241	4261	4252	-38.60	-26.10	0.676165803108808	8	2-6,4260-4256;8-11,4254-4251;13-19,4249-4243	1-1,4261-4261[UP5];7-7,4255-4255[SIL];12-12,4250-4250[SIL];20-21,4242-4241[UP3]	..(((((((.((((.(((((.&.))))).)))).)))))))..	GACAUGGCCUGGGGAAAAGGG&AUCUUUACCCCUGGCCAUGAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a737_TRINITY_DN1592_c0_g1_4252_TPlot.pdf
TRINITY_DN1592_c0_g1:4254	si_a735	TRINITY_DN1592_c0_g1	4243	4262	4254	-41.70	-29.10	0.697841726618705	6	1-2,4262-4261;4-8,4260-4256;10-13,4254-4251;15-21,4249-4243	3-3,x-x[BULq];9-9,4255-4255[SIL];14-14,4250-4250[SIL]	(((((((.((((.(((((-((&)).))))).)))).)))))))	CAUGGCCUGGGGAAAAGG-GC&GCAUCUUUACCCCUGGCCAUG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN1592_c0_g1_4254_TPlot.pdf
TRINITY_DN1592_c0_g1:4413	si_s630	TRINITY_DN1592_c0_g1	4397	4421	4413	-35.60	-25.20	0.707865168539326	10	1-7,4421-4415;9-15,4414-4408;16-21,4402-4397	8-8,x-x[BULq];x-x,4407-4403[BULt]	((((((.....(((((((-(((((((&))))))).)))))))-----))))))	GCGAAUGCGCGGCCUGCG-AGAGAUC&GAUCUUUUCGUAGGC-----GUUUGC	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN1592_c0_g1_4413_TPlot.pdf
TRINITY_DN1592_c0_g1:4414	si_s629	TRINITY_DN1592_c0_g1	4398	4422	4414	-34.60	-24.50	0.708092485549133	10	1-8,4422-4415;10-16,4414-4408;17-21,4402-4398	9-9,x-x[BULq];x-x,4407-4403[BULt]	(((((.....(((((((-((((((((&)))))))).)))))))-----)))))	CGAAUGCGCGGCCUGCG-AGAGAUCG&CGAUCUUUUCGUAGGC-----GUUUG	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN1592_c0_g1_4414_TPlot.pdf
TRINITY_DN1592_c0_g1:4415	si_s627	TRINITY_DN1592_c0_g1	4405	4424	4415	-36.10	-24.50	0.678670360110803	9.5	3-10,4422-4415;12-18,4414-4408	1-2,4424-4423[UP5];11-11,x-x[BULq];19-21,4407-4405[UP3]	...(((((((-((((((((..&..)))))))).)))))))...	GCGGCCUGCG-AGAGAUCGGC&AGCGAUCUUUUCGUAGGCGUU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN1592_c0_g1_4415_TPlot.pdf
TRINITY_DN1592_c0_g1:4418	si_s624	TRINITY_DN1592_c0_g1	4408	4426	4418	-37.90	-25.00	0.659630606860158	8.5	1-2,4426-4425;6-13,4422-4415;15-21,4414-4408	3-5,4424-4423[AILq];14-14,x-x[BULq]	(((((((-((((((((..-((&))...)))))))).)))))))	GCCUGCG-AGAGAUCGGC-GG&CCAAGCGAUCUUUUCGUAGGC	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN1592_c0_g1_4418_TPlot.pdf
TRINITY_DN1592_c0_g1:4428	si_s813	TRINITY_DN1592_c0_g1	4417	4437	4428	-27.10	-18.30	0.675276752767528	10.5	1-13,4437-4425	14-21,4424-4417[UP3]	........(((((((((((((&)))))))))))))........	AGAUCGGCGGAGAAGGUGACG&CGUUACCUUUUCUUAAUAAUG	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN1592_c0_g1_4428_TPlot.pdf
TRINITY_DN1592_c0_g1:4429	si_s812	TRINITY_DN1592_c0_g1	4418	4438	4429	-26.40	-18.30	0.693181818181818	10.5	2-14,4437-4425	1-1,4438-4438[UP5];15-21,4424-4418[UP3]	.......(((((((((((((.&.))))))))))))).......	GAUCGGCGGAGAAGGUGACGC&UCGUUACCUUUUCUUAAUAAU	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN1592_c0_g1_4429_TPlot.pdf
TRINITY_DN1592_c0_g1:4430	si_s811	TRINITY_DN1592_c0_g1	4419	4439	4430	-26.40	-18.30	0.693181818181818	11.5	3-15,4437-4425	1-2,4439-4438[UP5];16-21,4424-4419[UP3]	......(((((((((((((..&..)))))))))))))......	AUCGGCGGAGAAGGUGACGCG&UUCGUUACCUUUUCUUAAUAA	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN1592_c0_g1_4430_TPlot.pdf
TRINITY_DN1592_c0_g1:4432	si_a627	TRINITY_DN1592_c0_g1	4414	4441	4432	-29.50	-20.50	0.694915254237288	21.5	1-5,4441-4437;7-10,4435-4432;11-21,4424-4414	6-6,4436-4436[SIL];x-x,4431-4425[BULt]	(((((((((((.......((((.(((((&))))).))))-------)))))))))))	GAGAGAUCGGCGGAGAAGGUGACGCGCC&GGCGUAUUAU-------GUCGAUUUUUU	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN1592_c0_g1_4432_TPlot.pdf
TRINITY_DN1592_c0_g1:4452	si_a595	TRINITY_DN1592_c0_g1	4441	4461	4452	-30.30	-20.10	0.663366336633663	8.5	1-4,4461-4458;6-7,4456-4455;9-18,4453-4444	5-5,4457-4457[SIL];8-8,4454-4454[SIL];19-21,4443-4441[UP3]	...((((((((((.((.((((&)))).)).))))))))))...	CACUGCGAGAGUUGUGGCCUU&AAGGACAGAAUUUUCGCAAUU	2	0.911698574034005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN1592_c0_g1_4452_TPlot.pdf
TRINITY_DN1592_c0_g1:4456	si_a591	TRINITY_DN1592_c0_g1	4445	4465	4456	-33.80	-23.00	0.680473372781065	7	1-2,4465-4464;4-8,4462-4458;10-11,4456-4455;13-21,4453-4445	3-3,4463-4463[SIL];9-9,4457-4457[SIL];12-12,4454-4454[SIL]	(((((((((.((.(((((.((&)).))))).)).)))))))))	GCGAGAGUUGUGGCCUUCGUG&CAAGAAGGACAGAAUUUUCGC	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN1592_c0_g1_4456_TPlot.pdf
TRINITY_DN1592_c0_g1:4651	si_s312	TRINITY_DN1592_c0_g1	4640	4661	4651	-29.00	-19.10	0.658620689655173	12.5	4-9,4658-4653;10-20,4651-4641	1-3,4661-4659[UP5];x-x,4652-4652[BULt];21-21,4640-4640[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	CGGCGAGAAGGAUUGGAGUCCG&AAAAUUCUG-UCCUUCUUGUUA	2	0.999999968168467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1592_c0_g1_4651_TPlot.pdf
TRINITY_DN15939_c0_g1:1420	si_a350	TRINITY_DN15939_c0_g1	1409	1429	1420	-20.30	-13.20	0.650246305418719	15.5	9-21,1421-1409	1-8,1429-1422[UP5]	(((((((((((((........&........)))))))))))))	UCAGAAUAGAAUUCAAUUGCC&AAAAUAUUAAUUCUAUUUUGA	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN15939_c0_g1_1420_TPlot.pdf
TRINITY_DN1593_c0_g1:1223	si_a77	TRINITY_DN1593_c0_g1	1212	1232	1223	-22.20	-15.00	0.675675675675676	8	3-17,1230-1216	1-2,1232-1231[UP5];18-21,1215-1212[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAAAAUAAUGAAAAACGAAG&AAUUGUUUUUCAUUAUUAAGA	2	0.999757975977244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN1593_c0_g1_1223_TPlot.pdf
TRINITY_DN1593_c0_g1:1225	si_a75	TRINITY_DN1593_c0_g1	1214	1234	1225	-21.30	-15.00	0.704225352112676	10	5-19,1230-1216	1-4,1234-1231[UP5];20-21,1215-1214[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAUAAUGAAAAACGAAGAG&CAAAUUGUUUUUCAUUAUUAA	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1593_c0_g1_1225_TPlot.pdf
TRINITY_DN1593_c0_g1:1226	si_a74	TRINITY_DN1593_c0_g1	1215	1235	1226	-22.20	-15.00	0.675675675675676	11	6-20,1230-1216	1-5,1235-1231[UP5];21-21,1215-1215[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAUAAUGAAAAACGAAGAGA&UCAAAUUGUUUUUCAUUAUUA	4	0.99999996863755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1593_c0_g1_1226_TPlot.pdf
TRINITY_DN15943_c0_g1:666	si_a80	TRINITY_DN15943_c0_g1	652	675	666	-22.10	-15.40	0.69683257918552	11	2-12,674-664;13-20,660-653	1-1,675-675[UP5];x-x,663-661[BULt];21-21,652-652[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	AUUUCUUAAAGUUAGUGGAAGACC&UGUUUUUCAUUA---UUAAGAAAA	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN15943_c0_g1_666_TPlot.pdf
TRINITY_DN15945_c0_g1:1529	si_a319	TRINITY_DN15945_c0_g1	1518	1537	1529	-22.40	-15.10	0.674107142857143	10.5	5-8,1533-1530;10-21,1529-1518	1-4,1537-1534[UP5];9-9,x-x[BULq]	((((((((((((-((((....&....)))).))))))))))))	GAUGAGAAAAUC-UGGAAUUG&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999998901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN15945_c0_g1_1529_TPlot.pdf
TRINITY_DN15947_c0_g1:531	si_a789	TRINITY_DN15947_c0_g1	519	540	531	-24.80	-17.70	0.713709677419355	7	1-13,540-528;15-17,526-524;18-20,522-520	14-14,527-527[SIL];x-x,523-523[BULt];21-21,519-519[UP3]	.(((.(((.(((((((((((((&))))))))))))).)))-))).	UUUGCGAGUGUGGAGAAGUAGA&UCUAUUUUUCUAUUUUC-CAAU	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN15947_c0_g1_531_TPlot.pdf
TRINITY_DN1594_c0_g2:2072	si_s549	TRINITY_DN1594_c0_g2	2061	2081	2072	-20.50	-14.60	0.712195121951219	7	1-14,2081-2068	15-21,2067-2061[UP3]	.......((((((((((((((&)))))))))))))).......	UUUAAAGAAUUCUAUUUUGAU&AUCAAAAUAGAAUUAAUAUUU	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN1594_c0_g2_2072_TPlot.pdf
TRINITY_DN1594_c0_g2:2073	si_s548	TRINITY_DN1594_c0_g2	2062	2082	2073	-22.50	-16.20	0.72	6.5	1-15,2082-2068	16-21,2067-2062[UP3]	......(((((((((((((((&)))))))))))))))......	UUAAAGAAUUCUAUUUUGAUU&GAUCAAAAUAGAAUUAAUAUU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN1594_c0_g2_2073_TPlot.pdf
TRINITY_DN1594_c0_g2:2074	si_s547	TRINITY_DN1594_c0_g2	2063	2083	2074	-24.00	-16.20	0.675	7	2-16,2082-2068	1-1,2083-2083[UP5];17-21,2067-2063[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAAAGAAUUCUAUUUUGAUUA&CGAUCAAAAUAGAAUUAAUAU	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN1594_c0_g2_2074_TPlot.pdf
TRINITY_DN15951_c0_g1:1884	si_a461	TRINITY_DN15951_c0_g1	1873	1893	1884	-21.50	-14.70	0.683720930232558	8	2-16,1892-1878	1-1,1893-1893[UP5];17-21,1877-1873[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACUCUAUGUUAUGUAUAACG&UGUUAUAUAUAAUAUGUAAUU	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN15951_c0_g1_1884_TPlot.pdf
TRINITY_DN15951_c0_g1:1885	si_a460	TRINITY_DN15951_c0_g1	1874	1894	1885	-21.60	-14.70	0.680555555555555	9	3-17,1892-1878	1-2,1894-1893[UP5];18-21,1877-1874[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACUCUAUGUUAUGUAUAACGU&UUGUUAUAUAUAAUAUGUAAU	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN15951_c0_g1_1885_TPlot.pdf
TRINITY_DN15951_c0_g1:480	si_a316	TRINITY_DN15951_c0_g1	469	488	480	-26.30	-17.90	0.680608365019011	8.5	1-4,488-485;8-12,482-478;14-21,476-469	5-7,484-483[AILq];13-13,477-477[SIL]	((((((((.(((((..-((((&))))...))))).))))))))	AAGAAAAUGGUGGAGC-AUCC&GGAUUUAUCCAUGAUUUUUUU	3	0.999990058145084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN15951_c0_g1_480_TPlot.pdf
TRINITY_DN15951_c0_g1:482	si_a314	TRINITY_DN15951_c0_g1	471	490	482	-27.10	-17.80	0.656826568265683	9	1-6,490-485;10-14,482-478;16-21,476-471	7-9,484-483[AILq];15-15,477-477[SIL]	((((((.(((((..-((((((&))))))...))))).))))))	GAAAAUGGUGGAGC-AUCCGA&UUGGAUUUAUCCAUGAUUUUU	3	0.999999895452642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN15951_c0_g1_482_TPlot.pdf
TRINITY_DN15951_c0_g1:607	si_a497	TRINITY_DN15951_c0_g1	591	616	607	-32.00	-21.20	0.6625	17	3-5,614-612;7-10,610-607;11-21,601-591	1-2,616-615[UP5];6-6,611-611[SIL];x-x,606-602[BULt]	(((((((((((.....((((.(((..&..))).))))-----)))))))))))	AAGGGGGACGAUAAUGAAGAGGACGA&AUGUCGUUUU-----UCGUCUUCCUU	2	0.999999999938426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN15951_c0_g1_607_TPlot.pdf
TRINITY_DN15951_c0_g1:641	si_s71	TRINITY_DN15951_c0_g1	625	650	641	-25.70	-17.00	0.66147859922179	8	1-5,650-646;7-17,644-634;18-21,628-625	6-6,645-645[SIL];x-x,633-629[BULt]	((((.....(((((((((((.(((((&))))).)))))))))))-----))))	AGGAACCACAAGAAAAGAAAAAGAAG&CUUCUAUUUUUUUUCUU-----UCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN15951_c0_g1_641_TPlot.pdf
TRINITY_DN15951_c0_g1:642	si_s70	TRINITY_DN15951_c0_g1	626	651	642	-25.80	-17.20	0.666666666666667	8	1-6,651-646;8-18,644-634;19-21,628-626	7-7,645-645[SIL];x-x,633-629[BULt]	(((.....(((((((((((.((((((&)))))).)))))))))))-----)))	GGAACCACAAGAAAAGAAAAAGAAGU&ACUUCUAUUUUUUUUCUU-----UCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN15951_c0_g1_642_TPlot.pdf
TRINITY_DN15951_c0_g1:643	si_s69	TRINITY_DN15951_c0_g1	632	652	643	-23.40	-15.80	0.675213675213675	6	2-7,651-646;9-19,644-634	1-1,652-652[UP5];8-8,645-645[SIL];20-21,633-632[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	ACAAGAAAAGAAAAAGAAGUC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN15951_c0_g1_643_TPlot.pdf
TRINITY_DN15951_c0_g1:644	si_s68	TRINITY_DN15951_c0_g1	633	653	644	-23.10	-15.80	0.683982683982684	6.5	3-8,651-646;10-20,644-634	1-2,653-652[UP5];9-9,645-645[SIL];21-21,633-633[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	CAAGAAAAGAAAAAGAAGUCU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN15951_c0_g1_644_TPlot.pdf
TRINITY_DN15959_c2_g1:2755	si_s79	TRINITY_DN15959_c2_g1	2743	2765	2755	-26.20	-19.40	0.740458015267176	5	2-8,2764-2758;9-15,2756-2750;16-21,2748-2743	1-1,2765-2765[UP5];x-x,2757-2757[BULt];x-x,2749-2749[BULt]	((((((.(((((((.(((((((.&.)))))))-)))))))-))))))	AAGAAGAAAAGGAACAGAAGAAG&UUUUUUCU-UUCCUUU-CUUCUU	4	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN15959_c2_g1_2755_TPlot.pdf
TRINITY_DN15959_c2_g1:2759	si_s76	TRINITY_DN15959_c2_g1	2746	2768	2759	-23.60	-16.60	0.703389830508475	6	2-11,2767-2758;12-18,2756-2750;19-21,2748-2746	1-1,2768-2768[UP5];x-x,2757-2757[BULt];x-x,2749-2749[BULt]	(((.(((((((.((((((((((.&.))))))))))-)))))))-)))	AAGAAAAGGAACAGAAGAAGAAA&AUUUUUUUUCU-UUCCUUU-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN15959_c2_g1_2759_TPlot.pdf
TRINITY_DN1595_c0_g1:1171	si_s445	TRINITY_DN1595_c0_g1	1160	1180	1171	-21.10	-14.20	0.672985781990521	8	2-9,1179-1172;11-18,1170-1163	1-1,1180-1180[UP5];10-10,1171-1171[SIL];19-21,1162-1160[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	AAGUGUUGUUAAGUAUAAUGG&AUAUUAUAUAUAACAACAAUU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN1595_c0_g1_1171_TPlot.pdf
TRINITY_DN1595_c0_g1:1196	si_a401	TRINITY_DN1595_c0_g1	1185	1205	1196	-22.60	-15.10	0.668141592920354	7.5	1-13,1205-1193;16-18,1190-1188	14-15,1192-1191[SIL];19-21,1187-1185[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	CAUUGAUAAAGACAGUUCUAU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999998747172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1595_c0_g1_1196_TPlot.pdf
TRINITY_DN1595_c0_g1:1199	si_a398	TRINITY_DN1595_c0_g1	1188	1208	1199	-22.40	-15.50	0.691964285714286	8	3-16,1206-1193;19-21,1190-1188	1-2,1208-1207[UP5];17-18,1192-1191[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	UGAUAAAGACAGUUCUAUGAU&AAUAUAGAAUUGUUUUGUUUA	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1595_c0_g1_1199_TPlot.pdf
TRINITY_DN1595_c0_g1:414	si_s76	TRINITY_DN1595_c0_g1	402	424	414	-23.60	-15.90	0.673728813559322	7.5	1-4,424-421;5-15,419-409;17-21,406-402	x-x,420-420[BULt];16-16,408-407[AILt]	(((((..(((((((((((.((((&))))-)))))))))))-.)))))	GAGAACUGGAAAGAAAGGCAAGU&AUUU-UUUUUCUUUCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1595_c0_g1_414_TPlot.pdf
TRINITY_DN1596_c0_g1:664	si_a71	TRINITY_DN1596_c0_g1	653	676	664	-23.30	-15.50	0.665236051502146	12	1-5,676-672;6-20,668-654	x-x,671-669[BULt];21-21,653-653[UP3]	.(((((((((((((((...(((((&)))))---))))))))))))))).	CAGUGAGAAAUAGUUUUGCGGAGG&CUUUC---AAAUUGUUUUUCAUUA	2	0.9999996483754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1596_c0_g1_664_TPlot.pdf
TRINITY_DN1596_c0_g1:665	si_a70	TRINITY_DN1596_c0_g1	654	677	665	-23.90	-16.90	0.707112970711297	11	1-6,677-672;7-21,668-654	x-x,671-669[BULt]	(((((((((((((((...((((((&))))))---)))))))))))))))	AGUGAGAAAUAGUUUUGCGGAGGA&UCUUUC---AAAUUGUUUUUCAUU	4	0.999989419620488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1596_c0_g1_665_TPlot.pdf
TRINITY_DN1596_c0_g1:666	si_a69	TRINITY_DN1596_c0_g1	655	678	666	-24.00	-16.60	0.691666666666667	11	1-7,678-672;8-21,668-655	x-x,671-669[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GUGAGAAAUAGUUUUGCGGAGGAG&UUCUUUC---AAAUUGUUUUUCAU	4	0.999999762880908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1596_c0_g1_666_TPlot.pdf
TRINITY_DN15975_c4_g1:33	si_s87	TRINITY_DN15975_c4_g1	18	42	33	-32.90	-21.48	0.652887537993921	9	1-4,42-39;6-14,37-29;16-21,23-18	5-5,38-38[SIL];15-15,28-24[AILt]	((((((.....(((((((((.((((&)))).)))))))))----.))))))	GAGCGAUGGCCGAAGAAGGACGGAG&UUCCUUUCUUCUUC----UUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN15975_c4_g1_33_TPlot.pdf
TRINITY_DN15979_c1_g1:1235	si_a497	TRINITY_DN15979_c1_g1	1224	1246	1235	-32.00	-22.20	0.69375	7.5	2-8,1245-1239;9-21,1236-1224	1-1,1246-1246[UP5];x-x,1238-1237[BULt]	(((((((((((((..(((((((.&.)))))))--)))))))))))))	AAGGAAGAUGAAAAUAAUGAUAA&AUGUCGUU--UUUCGUCUUCCUU	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN15979_c1_g1_1235_TPlot.pdf
TRINITY_DN1597_c0_g1:622	si_a145	TRINITY_DN1597_c0_g1	610	631	622	-28.10	-19.70	0.701067615658363	10.5	4-17,628-615;18-20,613-611	1-3,631-629[UP5];x-x,614-614[BULt];21-21,610-610[UP3]	.(((.((((((((((((((...&...))))))))))))))-))).	UCCUCUGGAGCGACGACGACUU&UAAUCGUUGUUGUUUUA-AGGU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN1597_c0_g1_622_TPlot.pdf
TRINITY_DN1597_c0_g1:781	si_s238	TRINITY_DN1597_c0_g1	770	790	781	-33.40	-22.50	0.673652694610778	8	2-3,789-788;6-20,785-771	1-1,790-790[UP5];4-5,787-786[SIL];21-21,770-770[UP3]	.(((((((((((((((..((.&.))..))))))))))))))).	CGGAAUGCUUGUUGAUGACUG&AAGGAAUCAAUAGGCAUUUCC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s238_TRINITY_DN1597_c0_g1_781_TPlot.pdf
TRINITY_DN1597_c0_g1:783	si_s236	TRINITY_DN1597_c0_g1	772	792	783	-29.60	-20.10	0.679054054054054	10.5	4-5,789-788;8-21,785-772	1-3,792-790[UP5];6-7,787-786[SIL]	((((((((((((((..((...&...))..))))))))))))))	GAAUGCUUGUUGAUGACUGGA&AUAAGGAAUCAAUAGGCAUUU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN1597_c0_g1_783_TPlot.pdf
TRINITY_DN15992_c0_g1:108	si_a817	TRINITY_DN15992_c0_g1	97	117	108	-30.90	-21.40	0.692556634304207	7	1-14,117-104	15-21,103-97[UP3]	.......((((((((((((((&)))))))))))))).......	AACAACACUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN15992_c0_g1_108_TPlot.pdf
TRINITY_DN15992_c0_g1:109	si_a816	TRINITY_DN15992_c0_g1	98	118	109	-32.30	-21.50	0.665634674922601	7	2-15,117-104	1-1,118-118[UP5];16-21,103-98[UP3]	......((((((((((((((.&.))))))))))))))......	ACAACACUUUCUUCUUCUUCA&CGAAGAAGAAGAAAGGAAAGA	0	0.0992811205885377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN15992_c0_g1_109_TPlot.pdf
TRINITY_DN15992_c0_g1:111	si_a814	TRINITY_DN15992_c0_g1	100	120	111	-32.90	-21.50	0.653495440729483	9	4-17,117-104	1-3,120-118[UP5];18-21,103-100[UP3]	....((((((((((((((...&...))))))))))))))....	AACACUUUCUUCUUCUUCAAA&AGCGAAGAAGAAGAAAGGAAA	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN15992_c0_g1_111_TPlot.pdf
TRINITY_DN15992_c0_g1:112	si_a813	TRINITY_DN15992_c0_g1	101	121	112	-32.90	-21.50	0.653495440729483	10	5-18,117-104	1-4,121-118[UP5];19-21,103-101[UP3]	...((((((((((((((....&....))))))))))))))...	ACACUUUCUUCUUCUUCAAAU&AAGCGAAGAAGAAGAAAGGAA	2	0.967779006855436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN15992_c0_g1_112_TPlot.pdf
TRINITY_DN15994_c0_g1:77	si_a754	TRINITY_DN15994_c0_g1	66	90	77	-34.60	-22.50	0.65028901734104	12	2-7,89-84;8-8,82-82;9-20,78-67	1-1,90-90[UP5];x-x,83-83[BULt];x-x,81-79[BULt];21-21,66-66[UP3]	.((((((((((((...(.((((((.&.))))))-)---)))))))))))).	UGGAAACCCAGAGAUCGCAGGUUCG&UGAACCU-C---CUUUGGGUUUUUG	4	0.999997796202497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN15994_c0_g1_77_TPlot.pdf
TRINITY_DN1599_c0_g1:174	si_s40	TRINITY_DN1599_c0_g1	163	183	174	-24.30	-15.80	0.650205761316872	7.5	1-13,183-171;15-17,169-167	14-14,170-170[SIL];18-21,166-163[UP3]	....(((.(((((((((((((&))))))))))))).)))....	CCGCUCCUGUUAUUAGAGGUU&AAUCUUUAAUAAUUGGAUUUC	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN1599_c0_g1_174_TPlot.pdf
TRINITY_DN1599_c0_g1:177	si_s37	TRINITY_DN1599_c0_g1	166	186	177	-24.40	-16.00	0.655737704918033	9.5	4-16,183-171;18-20,169-167	1-3,186-184[UP5];17-17,170-170[SIL];21-21,166-166[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	CUCCUGUUAUUAGAGGUUAUG&CUAAAUCUUUAAUAAUUGGAU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN1599_c0_g1_177_TPlot.pdf
TRINITY_DN1599_c0_g1:520	si_a139	TRINITY_DN1599_c0_g1	509	530	520	-25.90	-21.00	0.810810810810811	5.5	2-6,529-525;7-19,523-511	1-1,530-530[UP5];x-x,524-524[BULt];20-21,510-509[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	UUGCAACAACGAUUAUAUUACA&AGUAAU-UAAUCGUUGUUGUUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN1599_c0_g1_520_TPlot.pdf
TRINITY_DN1599_c0_g1:522	si_a137	TRINITY_DN1599_c0_g1	511	532	522	-26.50	-21.00	0.792452830188679	7.5	4-8,529-525;9-21,523-511	1-3,532-530[UP5];x-x,524-524[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GCAACAACGAUUAUAUUACAGA&AUAGUAAU-UAAUCGUUGUUGU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN1599_c0_g1_522_TPlot.pdf
TRINITY_DN1599_c0_g1:637	si_a764	TRINITY_DN1599_c0_g1	628	646	637	-28.90	-20.00	0.69204152249135	7	3-12,644-635;15-20,634-629	1-2,646-645[UP5];13-14,x-x[BULq];21-21,628-628[UP3]	.((((((--((((((((((..&..))))))))))..)))))).	AUGAAUC--UCAGAAACCCUU&UUGGGUUUUUGAUUGAUUCAA	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1599_c0_g1_637_TPlot.pdf
TRINITY_DN16005_c0_g1:1646	si_s795	TRINITY_DN16005_c0_g1	1635	1655	1646	-30.30	-20.66	0.681848184818482	10.5	1-10,1655-1646;15-20,1641-1636	11-14,1645-1642[SIL];21-21,1635-1635[UP3]	.((((((....((((((((((&))))))))))....)))))).	UCGGAGACGCUGUGCGGGCUU&AAGCUCGUAUUUUAUCUUCGU	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN16005_c0_g1_1646_TPlot.pdf
TRINITY_DN16005_c0_g1:1647	si_s794	TRINITY_DN16005_c0_g1	1636	1656	1647	-31.20	-20.46	0.655769230769231	9.5	2-11,1655-1646;16-21,1641-1636	1-1,1656-1656[UP5];12-15,1645-1642[SIL]	((((((....((((((((((.&.))))))))))....))))))	CGGAGACGCUGUGCGGGCUUA&CAAGCUCGUAUUUUAUCUUCG	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN16005_c0_g1_1647_TPlot.pdf
TRINITY_DN16005_c0_g1:673	si_a72	TRINITY_DN16005_c0_g1	662	680	673	-21.90	-15.08	0.688584474885845	8.5	1-4,680-677;9-21,674-662	5-8,676-675[AILq]	(((((((((((((..--((((&))))....)))))))))))))	GUAAUGAAAAACAUG--GAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999986191918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN16005_c0_g1_673_TPlot.pdf
TRINITY_DN16005_c0_g1:674	si_a71	TRINITY_DN16005_c0_g1	663	681	674	-23.30	-16.08	0.690128755364807	8	1-5,681-677;10-21,674-663	6-9,676-675[AILq]	((((((((((((..--(((((&)))))....))))))))))))	UAAUGAAAAACAUG--GAAAG&CUUUCAAAUUGUUUUUCAUUA	2	0.999933670316614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN16005_c0_g1_674_TPlot.pdf
TRINITY_DN1600_c0_g1:3263	si_s71	TRINITY_DN1600_c0_g1	3252	3272	3263	-25.70	-17.10	0.665369649805448	11.5	1-5,3272-3268;7-9,3266-3264;12-20,3261-3253	6-6,3267-3267[SIL];10-11,3263-3262[SIL];21-21,3252-3252[UP3]	.(((((((((..(((.(((((&))))).)))..))))))))).	CGGAGAGGGAUCGGACGGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1600_c0_g1_3263_TPlot.pdf
TRINITY_DN1600_c0_g2:4040	si_s71	TRINITY_DN1600_c0_g2	4029	4049	4040	-25.70	-17.10	0.665369649805448	11.5	1-5,4049-4045;7-9,4043-4041;12-20,4038-4030	6-6,4044-4044[SIL];10-11,4040-4039[SIL];21-21,4029-4029[UP3]	.(((((((((..(((.(((((&))))).)))..))))))))).	CGGAGAGGGAUCGGACGGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1600_c0_g2_4040_TPlot.pdf
TRINITY_DN1600_c0_g2:4044	si_s78	TRINITY_DN1600_c0_g2	4032	4053	4044	-26.20	-17.80	0.679389312977099	7	1-9,4053-4045;11-13,4043-4041;15-21,4038-4032	10-10,4044-4044[SIL];14-14,4040-4039[AILt]	(((((((..(((.(((((((((&))))))))).)))-.)))))))	AGAGGGAUCGGACGGAAGAAAA&UUUUUUUCUUUCC-UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1600_c0_g2_4044_TPlot.pdf
TRINITY_DN1600_c1_g1:1059	si_a73	TRINITY_DN1600_c1_g1	1048	1067	1059	-21.90	-14.30	0.65296803652968	5.5	1-7,1067-1061;9-19,1060-1050	8-8,x-x[BULq];20-21,1049-1048[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	UUUAAUGAAAAAU-AUUUGAG&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1600_c1_g1_1059_TPlot.pdf
TRINITY_DN1600_c1_g1:1060	si_a72	TRINITY_DN1600_c1_g1	1049	1068	1060	-21.90	-14.80	0.675799086757991	5.5	1-8,1068-1061;10-20,1060-1050	9-9,x-x[BULq];21-21,1049-1049[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	UUAAUGAAAAAU-AUUUGAGG&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999860557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1600_c1_g1_1060_TPlot.pdf
TRINITY_DN16014_c0_g2:781	si_s76	TRINITY_DN16014_c0_g2	770	793	781	-23.60	-15.90	0.673728813559322	13	1-8,793-786;9-11,782-780;13-20,778-771	x-x,785-783[BULt];12-12,779-779[SIL];21-21,770-770[UP3]	.((((((((.(((...((((((((&))))))))---))).)))))))).	CGGAAGGGAUAGACCCGAAAGAGU&AUUUUUUU---UCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN16014_c0_g2_781_TPlot.pdf
TRINITY_DN16014_c0_g2:787	si_a323	TRINITY_DN16014_c0_g2	773	796	787	-26.80	-17.70	0.66044776119403	13	1-5,796-792;8-11,789-786;12-21,782-773	6-7,791-790[SIL];x-x,785-783[BULt]	((((((((((...((((..(((((&)))))..))))---))))))))))	AAGGGAUAGACCCGAAAGAGUGGA&UCCAUGAUUUU---UUUAUUCCUU	0	0.345740935415379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN16014_c0_g2_787_TPlot.pdf
TRINITY_DN16014_c0_g2:789	si_s71	TRINITY_DN16014_c0_g2	775	798	789	-25.70	-19.10	0.743190661478599	8	1-13,798-786;14-16,782-780;18-21,778-775	x-x,785-783[BULt];17-17,779-779[SIL]	((((.(((...(((((((((((((&)))))))))))))---))).))))	GGGAUAGACCCGAAAGAGUGGAAG&CUUCUAUUUUUUU---UCUUUCCU	4	0.999999874958037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN16014_c0_g2_789_TPlot.pdf
TRINITY_DN16015_c0_g1:91	si_a449	TRINITY_DN16015_c0_g1	80	100	91	-25.70	-17.70	0.688715953307393	8	1-6,100-95;9-20,92-81	7-8,94-93[SIL];21-21,80-80[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	AGUAUGACAAUGAAAAUCUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN16015_c0_g1_91_TPlot.pdf
TRINITY_DN16017_c0_g1:16	si_s526	TRINITY_DN16017_c0_g1	5	25	16	-25.60	-17.00	0.6640625	5.5	2-8,24-18;10-20,16-6	1-1,25-25[UP5];9-9,17-17[SIL];21-21,5-5[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	AAUUAAAAAUGAAUUCGGAUG&AAUUCGAAAUCAUUUUUGAUC	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN16017_c0_g1_16_TPlot.pdf
TRINITY_DN16017_c0_g1:18	si_s524	TRINITY_DN16017_c0_g1	7	27	18	-23.90	-15.80	0.661087866108787	8.5	4-10,24-18;12-21,16-7	1-3,27-25[UP5];11-11,17-17[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUAAAAAUGAAUUCGGAUGCC&UUAAUUCGAAAUCAUUUUUGA	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN16017_c0_g1_18_TPlot.pdf
TRINITY_DN1601_c0_g1:1808	si_a324	TRINITY_DN1601_c0_g1	1789	1817	1808	-27.50	-17.90	0.650909090909091	20.5	1-10,1817-1808;11-20,1799-1790	x-x,1807-1800[BULt];21-21,1789-1789[UP3]	.((((((((((........((((((((((&))))))))))--------)))))))))).	AAAGGAAUGGAUGACUACCGAAAUUAUGG&CCAUGAUUUU--------UUUAUUCCUUG	3	0.999999694312056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN1601_c0_g1_1808_TPlot.pdf
TRINITY_DN1601_c0_g1:4396	si_s75	TRINITY_DN1601_c0_g1	4381	4405	4396	-24.00	-17.80	0.741666666666667	10	1-10,4405-4396;11-20,4391-4382	x-x,4395-4392[BULt];21-21,4381-4381[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	UGAAAGGAAAGUGCUAAGAAAAAUA&UAUUUUUUUU----CUUUCCUUUCU	4	0.999999999999548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1601_c0_g1_4396_TPlot.pdf
TRINITY_DN1601_c1_g1:6877	si_s7	TRINITY_DN1601_c1_g1	6865	6885	6877	-21.70	-14.50	0.668202764976959	6.5	1-7,6885-6879;9-13,6878-6874;14-21,6872-6865	8-8,x-x[BULq];x-x,6873-6873[BULt]	((((((((.(((((-(((((((&))))))).)))))-))))))))	AUGUGGUGAAUGAU-AGUGAUA&UAUUACUUAUUAU-UACUAUAU	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN1601_c1_g1_6877_TPlot.pdf
TRINITY_DN1601_c3_g1:1429	si_a78	TRINITY_DN1601_c3_g1	1418	1440	1429	-22.30	-15.70	0.704035874439462	8	2-7,1439-1434;8-19,1431-1420	1-1,1440-1440[UP5];x-x,1433-1432[BULt];20-21,1419-1418[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	AACUUGAUGAUGAAUUAAACAAA&AUUGUUU--UUCAUUAUUAAGAA	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN1601_c3_g1_1429_TPlot.pdf
TRINITY_DN1601_c3_g1:1724	si_s84	TRINITY_DN1601_c3_g1	1713	1733	1724	-32.30	-21.88	0.677399380804954	7.5	1-6,1733-1728;10-21,1724-1713	7-9,1727-1725[SIL]	((((((((((((...((((((&))))))...))))))))))))	UGAAGAAGAAGAUAUGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1601_c3_g1_1724_TPlot.pdf
TRINITY_DN1601_c3_g1:3190	si_a71	TRINITY_DN1601_c3_g1	3179	3198	3190	-23.30	-15.50	0.665236051502146	9	1-9,3198-3190;11-17,3189-3183	10-10,x-x[BULq];18-21,3182-3179[UP3]	....(((((((-(((((((((&))))))))).)))))))....	AAAAGAGGAAC-AUUUGGAGG&CUUUCAAAUUGUUUUUCAUUA	2	0.999999285205839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1601_c3_g1_3190_TPlot.pdf
TRINITY_DN1601_c3_g1:3191	si_a69	TRINITY_DN1601_c3_g1	3181	3200	3191	-24.00	-16.10	0.670833333333333	9	2-11,3199-3190;13-19,3189-3183	1-1,3200-3200[UP5];12-12,x-x[BULq];20-21,3182-3181[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	AAGAGGAAC-AUUUGGAGGGG&UUCUUUCAAAUUGUUUUUCAU	2	0.999999210370534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1601_c3_g1_3191_TPlot.pdf
TRINITY_DN1601_c3_g1:3291	si_s74	TRINITY_DN1601_c3_g1	3280	3300	3291	-25.00	-18.00	0.72	12.5	7-21,3294-3280	1-6,3300-3295[UP5]	(((((((((((((((......&......)))))))))))))))	GAAAGGGAAGAAAAGCCGUUU&CUAUUUUUUUUCUUUCCUUUC	4	0.999999999945646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1601_c3_g1_3291_TPlot.pdf
TRINITY_DN1601_c3_g1:57	si_s764	TRINITY_DN1601_c3_g1	46	66	57	-25.70	-17.50	0.680933852140078	9.5	1-14,66-53	15-21,52-46[UP3]	.......((((((((((((((&)))))))))))))).......	UUUUCACGUUGGUCGUUGUUG&CAACAACGAUUAAUUACUAUU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN1601_c3_g1_57_TPlot.pdf
TRINITY_DN1601_c5_g1:1796	si_a767	TRINITY_DN1601_c5_g1	1785	1805	1796	-30.10	-21.80	0.724252491694352	9.5	1-3,1805-1803;5-9,1801-1797;12-21,1794-1785	4-4,1802-1802[SIL];10-11,1796-1795[SIL]	((((((((((..(((((.(((&))).)))))..))))))))))	GGGUUGAAUCCUUCGGACGCC&GGUUUUUGAUUGAUUCAACUC	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN1601_c5_g1_1796_TPlot.pdf
TRINITY_DN1601_c5_g1:2333	si_s18	TRINITY_DN1601_c5_g1	2322	2342	2333	-27.50	-18.50	0.672727272727273	9	1-12,2342-2331;15-17,2328-2326	13-14,2330-2329[SIL];18-21,2325-2322[UP3]	....(((..((((((((((((&))))))))))))..)))....	UCUGGCAUGCAGUGUAGUAGU&AUUACUAUAUUGAUUGCAACU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN1601_c5_g1_2333_TPlot.pdf
TRINITY_DN1601_c5_g1:2336	si_s15	TRINITY_DN1601_c5_g1	2325	2345	2336	-25.60	-18.50	0.72265625	10.5	4-15,2342-2331;18-20,2328-2326	1-3,2345-2343[UP5];16-17,2330-2329[SIL];21-21,2325-2325[UP3]	.(((..((((((((((((...&...))))))))))))..))).	GGCAUGCAGUGUAGUAGUUGC&AUUAUUACUAUAUUGAUUGCA	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN1601_c5_g1_2336_TPlot.pdf
TRINITY_DN1601_c5_g1:2428	si_s74	TRINITY_DN1601_c5_g1	2417	2437	2428	-25.00	-20.50	0.82	5	1-5,2437-2433;7-20,2431-2418	6-6,2432-2432[SIL];21-21,2417-2417[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CAAAGGAAAGAGAAACAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1601_c5_g1_2428_TPlot.pdf
TRINITY_DN1601_c5_g1:2429	si_s73	TRINITY_DN1601_c5_g1	2418	2438	2429	-24.00	-20.70	0.8625	4.5	1-6,2438-2433;8-21,2431-2418	7-7,2432-2432[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	AAAGGAAAGAGAAACAGUAGG&UCUAUUUUUUUUCUUUCCUUU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1601_c5_g1_2429_TPlot.pdf
TRINITY_DN1601_c5_g1:2432	si_s70	TRINITY_DN1601_c5_g1	2421	2440	2432	-25.80	-18.40	0.713178294573643	6.5	1-3,2440-2438;5-9,2437-2433;11-21,2431-2421	4-4,x-x[BULq];10-10,2432-2432[SIL]	(((((((((((.(((((-(((&))).))))).)))))))))))	GGAAAGAGAAACAGUAG-GGU&ACUUCUAUUUUUUUUCUUUCC	3	0.999999997427152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1601_c5_g1_2432_TPlot.pdf
TRINITY_DN1601_c5_g1:2433	si_s69	TRINITY_DN1601_c5_g1	2422	2441	2433	-23.40	-15.40	0.658119658119658	7.5	2-4,2440-2438;6-10,2437-2433;12-21,2431-2422	1-1,2441-2441[UP5];5-5,x-x[BULq];11-11,2432-2432[SIL]	((((((((((.(((((-(((.&.))).))))).))))))))))	GAAAGAGAAACAGUAG-GGUG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1601_c5_g1_2433_TPlot.pdf
TRINITY_DN1601_c5_g1:2487	si_a782	TRINITY_DN1601_c5_g1	2476	2498	2487	-26.40	-19.10	0.723484848484849	9	1-9,2498-2490;11-19,2486-2478	10-10,2489-2487[AILt];20-21,2477-2476[UP3]	..(((((((((...(((((((((&)))))))))--.)))))))))..	AUUGGAAGAAUUACGAAGAGUUG&CAACUCUUC--UAUUUUUCUAUU	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1601_c5_g1_2487_TPlot.pdf
TRINITY_DN1601_c5_g1:2490	si_a781	TRINITY_DN1601_c5_g1	2477	2499	2490	-27.40	-19.20	0.700729927007299	9	2-10,2498-2490;12-20,2486-2478	1-1,2499-2499[UP5];11-11,2489-2487[AILt];21-21,2477-2477[UP3]	.(((((((((...(((((((((.&.)))))))))--.))))))))).	UUGGAAGAAUUACGAAGAGUUGG&UCAACUCUUC--UAUUUUUCUAU	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN1601_c5_g1_2490_TPlot.pdf
TRINITY_DN1601_c5_g1:2516	si_s79	TRINITY_DN1601_c5_g1	2506	2525	2516	-26.20	-17.90	0.683206106870229	6.5	2-11,2524-2515;13-19,2514-2508	1-1,2525-2525[UP5];12-12,x-x[BULq];20-21,2507-2506[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	UCGAAGAGA-GAGAGAAAAAC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1601_c5_g1_2516_TPlot.pdf
TRINITY_DN1601_c5_g1:2951	si_a766	TRINITY_DN1601_c5_g1	2939	2960	2951	-30.50	-22.00	0.721311475409836	10.5	1-10,2960-2951;11-17,2949-2943	x-x,2950-2950[BULt];18-21,2942-2939[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AUCGGAGUCGGUUCAAGAGCCC&GGGUUUUUGA-UUGAUUCAACU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN1601_c5_g1_2951_TPlot.pdf
TRINITY_DN1601_c5_g1:2989	si_s87	TRINITY_DN1601_c5_g1	2977	2997	2989	-32.90	-22.10	0.671732522796353	9	2-4,2996-2994;7-18,2992-2981;19-20,2979-2978	1-1,2997-2997[UP5];5-6,2993-2993[AILq];x-x,2980-2980[BULt];21-21,2977-2977[UP3]	.((.((((((((((((.-(((.&.)))..))))))))))))-)).	CAGCCGAAGAGGAGGAU-GGAG&UUCCUUUCUUCUUCUUCG-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1601_c5_g1_2989_TPlot.pdf
TRINITY_DN1601_c5_g1:2996	si_a496	TRINITY_DN1601_c5_g1	2986	3005	2996	-32.40	-21.40	0.660493827160494	11	4-11,3002-2995;13-21,2994-2986	1-3,3005-3003[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AGGAGGAUG-GAGACGAUGAU&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999998473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1601_c5_g1_2996_TPlot.pdf
TRINITY_DN16020_c0_g1:737	si_s526	TRINITY_DN16020_c0_g1	723	746	737	-25.60	-16.80	0.65625	7	1-15,746-732;16-21,728-723	x-x,731-729[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GAUUAAAUUAAGUGAUUUUGGGUU&AAUUCGAAAUCAUUU---UUGAUC	2	0.987642480539365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN16020_c0_g1_737_TPlot.pdf
TRINITY_DN16020_c0_g1:741	si_s522	TRINITY_DN16020_c0_g1	730	752	741	-23.80	-15.50	0.651260504201681	9.5	1-3,752-750;4-19,747-732	x-x,749-748[BULt];20-21,731-730[UP3]	..((((((((((((((((..(((&)))--))))))))))))))))..	UUAAGUGAUUUUGGGUUAGCAGA&UCU--UAAUUCGAAAUCAUUUUU	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN16020_c0_g1_741_TPlot.pdf
TRINITY_DN16024_c0_g1:4325	si_a72	TRINITY_DN16024_c0_g1	4314	4334	4325	-21.90	-16.00	0.730593607305936	9	4-7,4331-4328;9-21,4326-4314	1-3,4334-4332[UP5];8-8,4327-4327[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GUAGUGGAGAACAUUUUGUGU&UUUCAAAUUGUUUUUCAUUAU	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN16024_c0_g1_4325_TPlot.pdf
TRINITY_DN16027_c0_g1:129	si_a79	TRINITY_DN16027_c0_g1	118	138	129	-22.20	-14.50	0.653153153153153	8	2-15,137-124	1-1,138-138[UP5];16-21,123-118[UP3]	......((((((((((((((.&.))))))))))))))......	AUGAAAAAUGAUGAAAAACAU&UUGUUUUUCAUUAUUAAGAAA	4	0.999999998522218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN16027_c0_g1_129_TPlot.pdf
TRINITY_DN16027_c0_g1:135	si_a73	TRINITY_DN16027_c0_g1	124	145	135	-21.90	-14.40	0.657534246575343	11.5	2-3,144-143;8-21,137-124	1-1,145-145[UP5];4-7,142-138[AILt]	((((((((((((((.....((.&.))-....))))))))))))))	AAUGAUGAAAAACAUUCAGGAC&UUC-AAAUUGUUUUUCAUUAUU	3	0.999999999999825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN16027_c0_g1_135_TPlot.pdf
TRINITY_DN16027_c0_g1:2508	si_a404	TRINITY_DN16027_c0_g1	2497	2517	2508	-21.70	-14.80	0.682027649769585	6.5	1-15,2517-2503	16-21,2502-2497[UP3]	......(((((((((((((((&)))))))))))))))......	UUUAACUAAACAAAACAAUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999987704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN16027_c0_g1_2508_TPlot.pdf
TRINITY_DN16032_c0_g1:885	si_a472	TRINITY_DN16032_c0_g1	874	894	885	-21.50	-14.60	0.67906976744186	6.5	2-8,893-887;10-19,885-876	1-1,894-894[UP5];9-9,886-886[SIL];20-21,875-874[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	ACUAUGACAAUAUUUAUAUAA&AUAUGUAAUUAUUGUUAUAUA	2	0.997326500109187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN16032_c0_g1_885_TPlot.pdf
TRINITY_DN16032_c0_g1:886	si_a471	TRINITY_DN16032_c0_g1	875	895	886	-21.10	-14.60	0.691943127962085	7.5	3-9,893-887;11-20,885-876	1-2,895-894[UP5];10-10,886-886[SIL];21-21,875-875[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CUAUGACAAUAUUUAUAUAAC&AAUAUGUAAUUAUUGUUAUAU	2	0.994143829972238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN16032_c0_g1_886_TPlot.pdf
TRINITY_DN16032_c0_g1:887	si_a470	TRINITY_DN16032_c0_g1	876	896	887	-21.30	-14.50	0.68075117370892	8.5	4-10,893-887;12-21,885-876	1-3,896-894[UP5];11-11,886-886[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UAUGACAAUAUUUAUAUAACU&UAAUAUGUAAUUAUUGUUAUA	2	0.995866999552873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN16032_c0_g1_887_TPlot.pdf
TRINITY_DN16036_c0_g1:1166	si_a786	TRINITY_DN16036_c0_g1	1155	1174	1166	-26.60	-18.50	0.695488721804511	4.5	1-5,1174-1170;7-14,1169-1162;16-21,1160-1155	6-6,x-x[BULq];15-15,1161-1161[SIL]	((((((.((((((((-(((((&))))).)))))))).))))))	GGGAAAAAGAAAGAU-GAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999945301483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN16036_c0_g1_1166_TPlot.pdf
TRINITY_DN16036_c0_g1:1217	si_a118	TRINITY_DN16036_c0_g1	1206	1226	1217	-30.70	-21.90	0.713355048859935	8.5	3-8,1224-1219;10-18,1217-1209	1-2,1226-1225[UP5];9-9,1218-1218[SIL];19-21,1208-1206[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	CCGGCUGUAAAAGAAGCUCCC&ACGAGCUUGUUUUAUAGCAAU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN16036_c0_g1_1217_TPlot.pdf
TRINITY_DN16036_c0_g1:1221	si_a114	TRINITY_DN16036_c0_g1	1210	1230	1221	-27.90	-18.20	0.652329749103943	12.5	7-12,1224-1219;14-21,1217-1210	1-6,1230-1225[UP5];13-13,1218-1218[SIL]	((((((((.((((((......&......)))))).))))))))	CUGUAAAAGAAGCUCCCGAUU&AAAUACGAGCUUGUUUUAUAG	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN16036_c0_g1_1221_TPlot.pdf
TRINITY_DN16036_c0_g1:248	si_s79	TRINITY_DN16036_c0_g1	235	257	248	-26.20	-18.10	0.690839694656489	11.5	4-10,254-248;11-20,245-236	1-3,257-255[UP5];x-x,247-246[BULt];21-21,235-235[UP3]	.((((((((((..(((((((...&...)))))))--)))))))))).	UGGAAGAAAGGCAAAAGAGACUC&UUUUUUCUUU--CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN16036_c0_g1_248_TPlot.pdf
TRINITY_DN16036_c0_g1:249	si_s78	TRINITY_DN16036_c0_g1	236	258	249	-26.20	-18.10	0.690839694656489	12.5	5-11,254-248;12-21,245-236	1-4,258-255[UP5];x-x,247-246[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	GGAAGAAAGGCAAAAGAGACUCG&UUUUUUUCUUU--CCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN16036_c0_g1_249_TPlot.pdf
TRINITY_DN16036_c0_g1:250	si_s77	TRINITY_DN16036_c0_g1	237	259	250	-25.50	-17.00	0.666666666666667	14	6-12,254-248;13-21,245-237	1-5,259-255[UP5];x-x,247-246[BULt]	(((((((((..(((((((.....&.....)))))))--)))))))))	GAAGAAAGGCAAAAGAGACUCGA&UUUUUUUUCUUU--CCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN16036_c0_g1_250_TPlot.pdf
TRINITY_DN16036_c0_g1:403	si_s76	TRINITY_DN16036_c0_g1	392	412	403	-23.60	-15.80	0.669491525423729	8	2-8,411-405;11-21,402-392	1-1,412-412[UP5];9-10,404-403[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	AGGAGAGGAAAUUAAAAAGGC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN16036_c0_g1_403_TPlot.pdf
TRINITY_DN16036_c0_g1:926	si_s69	TRINITY_DN16036_c0_g1	907	935	926	-23.40	-16.20	0.692307692307692	12.5	3-15,933-921;16-21,912-907	1-2,935-934[UP5];x-x,920-913[BULt]	((((((........(((((((((((((..&..)))))))))))))--------))))))	GAAAGAGGGCUGCCGAAAAAGUAGAAGAA&AACUUCUAUUUUUUU--------UCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN16036_c0_g1_926_TPlot.pdf
TRINITY_DN16036_c0_g1:955	si_s90	TRINITY_DN16036_c0_g1	943	964	955	-35.30	-28.20	0.798866855524079	5	1-14,964-951;15-19,949-945	x-x,950-950[BULt];20-21,944-943[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AGGAAGCAGAAGAGGAGGAAAG&CUUUCUUCUUCUUC-GCUUCGG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN16036_c0_g1_955_TPlot.pdf
TRINITY_DN16036_c0_g1:956	si_s89	TRINITY_DN16036_c0_g1	944	965	956	-35.30	-30.60	0.86685552407932	4	1-15,965-951;16-20,949-945	x-x,950-950[BULt];21-21,944-944[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	GGAAGCAGAAGAGGAGGAAAGG&CCUUUCUUCUUCUUC-GCUUCG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN16036_c0_g1_956_TPlot.pdf
TRINITY_DN16036_c0_g1:961	si_s84	TRINITY_DN16036_c0_g1	950	972	961	-32.30	-25.80	0.798761609907121	6.5	1-5,972-968;6-20,965-951	x-x,967-966[BULt];21-21,950-950[UP3]	.(((((((((((((((..(((((&)))))--))))))))))))))).	AGAAGAGGAGGAAAGGCAAAAGA&UCUUU--CCUUUCUUCUUCUUCG	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN16036_c0_g1_961_TPlot.pdf
TRINITY_DN16036_c0_g1:965	si_s80	TRINITY_DN16036_c0_g1	954	976	965	-28.20	-21.80	0.773049645390071	9	3-9,974-968;10-21,965-954	1-2,976-975[UP5];x-x,967-966[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	GAGGAGGAAAGGCAAAAGAGACU&UUUUUCUUU--CCUUUCUUCUUC	4	0.999998416077658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN16036_c0_g1_965_TPlot.pdf
TRINITY_DN16036_c0_g1:968	si_s79	TRINITY_DN16036_c0_g1	955	977	968	-26.20	-18.60	0.709923664122137	11	4-10,974-968;11-21,965-955	1-3,977-975[UP5];x-x,967-966[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	AGGAGGAAAGGCAAAAGAGACUG&UUUUUUCUUU--CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN16036_c0_g1_968_TPlot.pdf
TRINITY_DN1603_c0_g1:1529	si_a753	TRINITY_DN1603_c0_g1	1518	1538	1529	-33.10	-21.90	0.661631419939577	9	3-5,1536-1534;7-17,1532-1522	1-2,1538-1537[UP5];6-6,1533-1533[SIL];18-21,1521-1518[UP3]	....(((((((((((.(((..&..))).)))))))))))....	ACCCACCCAAAGGAGCUUCUG&AUGAACCUCCUUUGGGUUUUU	3	0.999996599817936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN1603_c0_g1_1529_TPlot.pdf
TRINITY_DN1603_c0_g1:476	si_s204	TRINITY_DN1603_c0_g1	462	485	476	-36.30	-23.90	0.658402203856749	7	1-2,485-484;4-13,482-473;14-20,469-463	3-3,483-483[SIL];x-x,472-470[BULt];21-21,462-462[UP3]	.(((((((...((((((((((.((&)).))))))))))---))))))).	AGAACAUGAUUACUGGUACAUCCC&GGAAUGUACCAGU---UGUGUUCG	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s204_TRINITY_DN1603_c0_g1_476_TPlot.pdf
TRINITY_DN1603_c0_g1:477	si_s203	TRINITY_DN1603_c0_g1	463	486	477	-35.50	-24.50	0.690140845070423	6	1-3,486-484;5-14,482-473;15-21,469-463	4-4,483-483[SIL];x-x,472-470[BULt]	(((((((...((((((((((.(((&))).))))))))))---)))))))	GAACAUGAUUACUGGUACAUCCCA&UGGAAUGUACCAGU---UGUGUUC	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN1603_c0_g1_477_TPlot.pdf
TRINITY_DN1603_c0_g1:478	si_s202	TRINITY_DN1603_c0_g1	464	487	478	-33.60	-22.20	0.660714285714286	6	1-4,487-484;6-15,482-473;16-21,469-464	5-5,483-483[SIL];x-x,472-470[BULt]	((((((...((((((((((.((((&)))).))))))))))---))))))	AACAUGAUUACUGGUACAUCCCAA&UUGGAAUGUACCAGU---UGUGUU	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN1603_c0_g1_478_TPlot.pdf
TRINITY_DN1603_c0_g1:481	si_s199	TRINITY_DN1603_c0_g1	470	490	481	-31.20	-20.40	0.653846153846154	9	3-7,488-484;9-18,482-473	1-2,490-489[UP5];8-8,483-483[SIL];19-21,472-470[UP3]	...((((((((((.(((((..&..))))).))))))))))...	AUUACUGGUACAUCCCAAGCC&AUUUUGGAAUGUACCAGUUGU	3	0.999875134613737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN1603_c0_g1_481_TPlot.pdf
TRINITY_DN1603_c0_g1:482	si_s198	TRINITY_DN1603_c0_g1	471	491	482	-30.80	-20.40	0.662337662337662	10	4-8,488-484;10-19,482-473	1-3,491-489[UP5];9-9,483-483[SIL];20-21,472-471[UP3]	..((((((((((.(((((...&...))))).))))))))))..	UUACUGGUACAUCCCAAGCCG&UAUUUUGGAAUGUACCAGUUG	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN1603_c0_g1_482_TPlot.pdf
TRINITY_DN1603_c0_g1:483	si_s197	TRINITY_DN1603_c0_g1	472	492	483	-29.20	-20.40	0.698630136986301	11	5-9,488-484;11-20,482-473	1-4,492-489[UP5];10-10,483-483[SIL];21-21,472-472[UP3]	.((((((((((.(((((....&....))))).)))))))))).	UACUGGUACAUCCCAAGCCGA&UUAUUUUGGAAUGUACCAGUU	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN1603_c0_g1_483_TPlot.pdf
TRINITY_DN1603_c0_g1:484	si_s196	TRINITY_DN1603_c0_g1	473	493	484	-29.30	-20.40	0.696245733788396	12	6-10,488-484;12-21,482-473	1-5,493-489[UP5];11-11,483-483[SIL]	((((((((((.(((((.....&.....))))).))))))))))	ACUGGUACAUCCCAAGCCGAU&AUUAUUUUGGAAUGUACCAGU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN1603_c0_g1_484_TPlot.pdf
TRINITY_DN1603_c0_g1:514	si_s208	TRINITY_DN1603_c0_g1	504	523	514	-34.50	-23.00	0.666666666666667	8	2-13,522-511;16-18,509-507	1-1,523-523[UP5];14-15,510-510[AILq];19-21,506-504[UP3]	...(((.-((((((((((((.&.))))))))))))..)))...	UGAUCGU-CGCAGCUGGUACU&UGUACCAGUUGUGUUCGAAAC	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN1603_c0_g1_514_TPlot.pdf
TRINITY_DN1603_c0_g1:515	si_s207	TRINITY_DN1603_c0_g1	505	524	515	-33.00	-23.00	0.696969696969697	8.5	3-14,522-511;17-19,509-507	1-2,524-523[UP5];15-16,510-510[AILq];20-21,506-505[UP3]	..(((.-((((((((((((..&..))))))))))))..)))..	GAUCGU-CGCAGCUGGUACUG&AUGUACCAGUUGUGUUCGAAA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN1603_c0_g1_515_TPlot.pdf
TRINITY_DN1603_c0_g1:516	si_s206	TRINITY_DN1603_c0_g1	506	525	516	-33.00	-23.00	0.696969696969697	9.5	4-15,522-511;18-20,509-507	1-3,525-523[UP5];16-17,510-510[AILq];21-21,506-506[UP3]	.(((.-((((((((((((...&...))))))))))))..))).	AUCGU-CGCAGCUGGUACUGG&AAUGUACCAGUUGUGUUCGAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN1603_c0_g1_516_TPlot.pdf
TRINITY_DN1603_c0_g1:517	si_s205	TRINITY_DN1603_c0_g1	507	526	517	-34.90	-22.80	0.653295128939828	10.5	5-16,522-511;19-21,509-507	1-4,526-523[UP5];17-18,510-510[AILq]	(((.-((((((((((((....&....))))))))))))..)))	UCGU-CGCAGCUGGUACUGGU&GAAUGUACCAGUUGUGUUCGA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN1603_c0_g1_517_TPlot.pdf
TRINITY_DN16045_c0_g1:267	si_a795	TRINITY_DN16045_c0_g1	255	277	267	-30.20	-20.10	0.665562913907285	7	1-5,277-273;6-13,271-264;14-19,262-257	x-x,272-272[BULt];x-x,263-263[BULt];20-21,256-255[UP3]	..((((((.((((((((.(((((&)))))-))))))))-))))))..	UGUCGGAUAUGGAAAGUAAGGAA&UUUCU-AUUUUCCA-AUCCGAAG	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN16045_c0_g1_267_TPlot.pdf
TRINITY_DN16045_c0_g1:270	si_a792	TRINITY_DN16045_c0_g1	258	280	270	-27.60	-20.90	0.757246376811594	6	1-8,280-273;9-16,271-264;17-21,262-258	x-x,272-272[BULt];x-x,263-263[BULt]	(((((.((((((((.((((((((&))))))))-))))))))-)))))	CGGAUAUGGAAAGUAAGGAAGAU&AUUUUUCU-AUUUUCCA-AUCCG	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN16045_c0_g1_270_TPlot.pdf
TRINITY_DN16045_c0_g1:271	si_a791	TRINITY_DN16045_c0_g1	259	281	271	-26.50	-19.90	0.750943396226415	6.5	1-9,281-273;10-17,271-264;18-21,262-259	x-x,272-272[BULt];x-x,263-263[BULt]	((((.((((((((.(((((((((&)))))))))-))))))))-))))	GGAUAUGGAAAGUAAGGAAGAUG&UAUUUUUCU-AUUUUCCA-AUCC	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN16045_c0_g1_271_TPlot.pdf
TRINITY_DN16047_c0_g1:72	si_s430	TRINITY_DN16047_c0_g1	61	81	72	-21.30	-15.60	0.732394366197183	11.5	6-20,76-62	1-5,81-77[UP5];21-21,61-61[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGUAUGUAAUUGUUGAAGCA&UAUAACAAUAAUUACAUAUUA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN16047_c0_g1_72_TPlot.pdf
TRINITY_DN1604_c0_g1:4101	si_s843	TRINITY_DN1604_c0_g1	4090	4110	4101	-36.60	-25.10	0.685792349726776	12	7-17,4104-4094;19-21,4092-4090	1-6,4110-4105[UP5];18-18,4093-4093[SIL]	(((.(((((((((((......&......))))))))))).)))	GAGCCGACUCGCUUCAGAUUG&UUGAAAGAAGCGAGUCGACUC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s843_TRINITY_DN1604_c0_g1_4101_TPlot.pdf
TRINITY_DN1604_c0_g1:5847	si_s809	TRINITY_DN1604_c0_g1	5836	5856	5847	-28.50	-22.30	0.782456140350877	8	2-16,5855-5841	1-1,5856-5856[UP5];17-21,5840-5836[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GGUAUGAAAAGGUGACGAGGC&UCUUCGUUACCUUUUCUUAAU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1604_c0_g1_5847_TPlot.pdf
TRINITY_DN16051_c0_g1:142	si_s596	TRINITY_DN16051_c0_g1	130	151	142	-30.40	-20.40	0.671052631578947	8.5	3-16,149-136;18-20,133-131	1-2,151-150[UP5];17-17,135-134[AILt];21-21,130-130[UP3]	.(((..((((((((((((((..&..))))))))))))))-.))).	UGAGUUUUCGCUUGGGUUUGCG&GAUAAAUCCAAGCGAA-UCUUU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s596_TRINITY_DN16051_c0_g1_142_TPlot.pdf
TRINITY_DN16051_c0_g1:147	si_a853	TRINITY_DN16051_c0_g1	136	157	147	-26.30	-18.20	0.692015209125475	9	1-8,157-150;9-16,148-141	x-x,149-149[BULt];17-21,140-136[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	UUCGCUUGGGUUUGCGAGUUAG&CUAACUUG-AAAUCCAAUUAUU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a853_TRINITY_DN16051_c0_g1_147_TPlot.pdf
TRINITY_DN16051_c0_g1:91	si_s892	TRINITY_DN16051_c0_g1	80	100	91	-29.50	-20.60	0.698305084745763	13	4-18,97-83	1-3,100-98[UP5];19-21,82-80[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGGGAGGGGGAGGUCUGUGGC&UAAAUAGGCUUUCUCUUCAAU	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN16051_c0_g1_91_TPlot.pdf
TRINITY_DN16051_c0_g1:92	si_s891	TRINITY_DN16051_c0_g1	81	101	92	-29.60	-20.60	0.695945945945946	13.5	5-19,97-83	1-4,101-98[UP5];20-21,82-81[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGGAGGGGGAGGUCUGUGGCU&AUAAAUAGGCUUUCUCUUCAA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN16051_c0_g1_92_TPlot.pdf
TRINITY_DN16057_c0_g1:1262	si_a329	TRINITY_DN16057_c0_g1	1248	1271	1262	-29.60	-20.40	0.689189189189189	9	1-10,1271-1262;11-18,1259-1252;19-20,1250-1249	x-x,1261-1260[BULt];x-x,1251-1251[BULt];21-21,1248-1248[UP3]	.((.((((((((..((((((((((&))))))))))--))))))))-)).	AGGCGACAAGGAUGAUAGGAGAAU&AUUUUUUUAU--UCCUUGUC-CCG	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN16057_c0_g1_1262_TPlot.pdf
TRINITY_DN16057_c0_g1:1265	si_a326	TRINITY_DN16057_c0_g1	1252	1274	1265	-26.20	-18.60	0.709923664122137	9	3-13,1272-1262;14-21,1259-1252	1-2,1274-1273[UP5];x-x,1261-1260[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GACAAGGAUGAUAGGAGAAUUUA&AUGAUUUUUUUAU--UCCUUGUC	4	0.999497737729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN16057_c0_g1_1265_TPlot.pdf
TRINITY_DN16057_c2_g1:688	si_a58	TRINITY_DN16057_c2_g1	677	697	688	-34.60	-22.60	0.653179190751445	7.5	1-3,697-695;5-16,693-682;18-19,680-679	4-4,694-694[SIL];17-17,681-681[SIL];20-21,678-677[UP3]	..((.((((((((((((.(((&))).)))))))))))).))..	UAUGUGAGAAGUGAGUCCGCU&AGUCGACUCGCUUCUUUCAAA	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN16057_c2_g1_688_TPlot.pdf
TRINITY_DN1605_c0_g1:1383	si_a71	TRINITY_DN1605_c0_g1	1372	1394	1383	-23.30	-15.20	0.652360515021459	7	1-7,1394-1388;8-14,1385-1379;16-20,1377-1373	x-x,1387-1386[BULt];15-15,1378-1378[SIL];21-21,1372-1372[UP3]	.(((((.(((((((..(((((((&)))))))--))))))).))))).	GGAUGGUAAACAAUUAUUGAAAG&CUUUCAA--AUUGUUUUUCAUUA	2	0.999999991056292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1605_c0_g1_1383_TPlot.pdf
TRINITY_DN1605_c0_g1:3202	si_a511	TRINITY_DN1605_c0_g1	3188	3215	3202	-38.40	-25.70	0.669270833333333	14	1-5,3215-3211;6-16,3206-3196;17-21,3192-3188	x-x,3210-3207[BULt];x-x,3195-3193[BULt]	(((((...(((((((((((....(((((&)))))----)))))))))))---)))))	CUGCCGAUUUGCGUUCCAAUACUGGAGG&CUUCC----UUGGAAUGUAA---GGCGG	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN1605_c0_g1_3202_TPlot.pdf
TRINITY_DN1605_c0_g1:3206	si_a507	TRINITY_DN1605_c0_g1	3195	3219	3206	-34.90	-23.60	0.67621776504298	14	3-9,3217-3211;10-20,3206-3196	1-2,3219-3218[UP5];x-x,3210-3207[BULt];21-21,3195-3195[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	UUUGCGUUCCAAUACUGGAGGACAA&UCGUCUUCC----UUGGAAUGUAAG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN1605_c0_g1_3206_TPlot.pdf
TRINITY_DN1605_c0_g1:3211	si_a506	TRINITY_DN1605_c0_g1	3196	3220	3211	-33.40	-23.30	0.697604790419162	15	4-10,3217-3211;11-21,3206-3196	1-3,3220-3218[UP5];x-x,3210-3207[BULt]	(((((((((((....(((((((...&...)))))))----)))))))))))	UUGCGUUCCAAUACUGGAGGACAAG&UUCGUCUUCC----UUGGAAUGUAA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN1605_c0_g1_3211_TPlot.pdf
TRINITY_DN1605_c0_g1:3212	si_a505	TRINITY_DN1605_c0_g1	3197	3221	3212	-33.30	-22.40	0.672672672672673	17	5-11,3217-3211;12-21,3206-3197	1-4,3221-3218[UP5];x-x,3210-3207[BULt]	((((((((((....(((((((....&....)))))))----))))))))))	UGCGUUCCAAUACUGGAGGACAAGC&UUUCGUCUUCC----UUGGAAUGUA	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN1605_c0_g1_3212_TPlot.pdf
TRINITY_DN1605_c0_g1:3381	si_s80	TRINITY_DN1605_c0_g1	3370	3394	3381	-28.20	-18.90	0.670212765957447	12.5	1-9,3394-3386;10-20,3381-3371	x-x,3385-3382[BULt];21-21,3370-3370[UP3]	.(((((((((((....(((((((((&)))))))))----))))))))))).	UAAGAGGAAGGGUCUUAAAGAAGGA&UUUUUCUUU----CCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1605_c0_g1_3381_TPlot.pdf
TRINITY_DN1605_c0_g1:3602	si_a899	TRINITY_DN1605_c0_g1	3592	3611	3602	-18.70	-13.60	0.727272727272727	4.5	1-10,3611-3602;12-20,3601-3593	11-11,x-x[BULq];21-21,3592-3592[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	AUUUUAUAUU-CUUAUUGUUG&UAAUAAUAAGUAAUAUAAAAA	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1605_c0_g1_3602_TPlot.pdf
TRINITY_DN1605_c0_g1:3603	si_a898	TRINITY_DN1605_c0_g1	3593	3612	3603	-20.50	-13.90	0.678048780487805	5	2-11,3611-3602;13-21,3601-3593	1-1,3612-3612[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	UUUUAUAUU-CUUAUUGUUGA&GUAAUAAUAAGUAAUAUAAAA	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN1605_c0_g1_3603_TPlot.pdf
TRINITY_DN1607_c1_g1:127	si_a21	TRINITY_DN1607_c1_g1	116	136	127	-24.30	-16.10	0.662551440329218	7	1-13,136-124;16-18,121-119	14-15,123-122[SIL];19-21,118-116[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	AACGAAAGAAAAAUGAAUGGG&CCUAUUUAUUUUUAGUUCUAA	4	0.999999818689352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN1607_c1_g1_127_TPlot.pdf
TRINITY_DN1607_c1_g1:185	si_s811	TRINITY_DN1607_c1_g1	174	194	185	-26.40	-17.60	0.666666666666667	10	1-6,194-189;8-16,187-179	7-7,188-188[SIL];17-21,178-174[UP3]	.....(((((((((.((((((&)))))).))))))))).....	AAAAGAAGAGGAGGAAGCGAA&UUCGUUACCUUUUCUUAAUAA	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN1607_c1_g1_185_TPlot.pdf
TRINITY_DN1607_c1_g1:186	si_s810	TRINITY_DN1607_c1_g1	175	195	186	-27.90	-19.90	0.71326164874552	8.5	1-7,195-189;9-17,187-179	8-8,188-188[SIL];18-21,178-175[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AAAGAAGAGGAGGAAGCGAAG&CUUCGUUACCUUUUCUUAAUA	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1607_c1_g1_186_TPlot.pdf
TRINITY_DN1607_c1_g1:188	si_s808	TRINITY_DN1607_c1_g1	177	197	188	-28.60	-19.90	0.695804195804196	9	3-9,195-189;11-19,187-179	1-2,197-196[UP5];10-10,188-188[SIL];20-21,178-177[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AGAAGAGGAGGAAGCGAAGCA&AUCUUCGUUACCUUUUCUUAA	3	0.999984791192561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1607_c1_g1_188_TPlot.pdf
TRINITY_DN1607_c1_g1:189	si_s807	TRINITY_DN1607_c1_g1	178	198	189	-28.90	-19.90	0.688581314878893	10	4-10,195-189;12-20,187-179	1-3,198-196[UP5];11-11,188-188[SIL];21-21,178-178[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	GAAGAGGAGGAAGCGAAGCAA&UAUCUUCGUUACCUUUUCUUA	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1607_c1_g1_189_TPlot.pdf
TRINITY_DN1607_c1_g1:190	si_s806	TRINITY_DN1607_c1_g1	179	199	190	-28.60	-19.50	0.681818181818182	11	5-11,195-189;13-21,187-179	1-4,199-196[UP5];12-12,188-188[SIL]	(((((((((.(((((((....&....))))))).)))))))))	AAGAGGAGGAAGCGAAGCAAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1607_c1_g1_190_TPlot.pdf
TRINITY_DN1607_c1_g1:191	si_s805	TRINITY_DN1607_c1_g1	180	200	191	-28.60	-18.60	0.65034965034965	12	6-12,195-189;14-21,187-180	1-5,200-196[UP5];13-13,188-188[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AGAGGAGGAAGCGAAGCAAAG&UUUAUCUUCGUUACCUUUUCU	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1607_c1_g1_191_TPlot.pdf
TRINITY_DN1607_c1_g1:218	si_a498	TRINITY_DN1607_c1_g1	207	227	218	-33.50	-22.60	0.674626865671642	8	1-10,227-218;13-20,215-208	11-12,217-216[SIL];21-21,207-207[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	GAAGGAAGAGCAAGAAUGGCA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999774156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1607_c1_g1_218_TPlot.pdf
TRINITY_DN1607_c1_g1:219	si_a497	TRINITY_DN1607_c1_g1	208	228	219	-32.00	-22.10	0.690625	7	2-11,227-218;14-21,215-208	1-1,228-228[UP5];12-13,217-216[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AAGGAAGAGCAAGAAUGGCAG&AUGUCGUUUUUCGUCUUCCUU	3	0.999999998986108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1607_c1_g1_219_TPlot.pdf
TRINITY_DN1607_c1_g1:220	si_a496	TRINITY_DN1607_c1_g1	209	229	220	-32.40	-21.20	0.654320987654321	8	3-12,227-218;15-21,215-209	1-2,229-228[UP5];13-14,217-216[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AGGAAGAGCAAGAAUGGCAGA&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1607_c1_g1_220_TPlot.pdf
TRINITY_DN1607_c1_g1:225	si_s312	TRINITY_DN1607_c1_g1	214	234	225	-29.00	-20.00	0.689655172413793	9.5	4-11,231-224;13-20,222-215	1-3,234-232[UP5];12-12,223-223[SIL];21-21,214-214[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	GAGCAAGAAUGGCAGAAUGCA&AAAAUUCUGUCCUUCUUGUUA	2	0.999657069035875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1607_c1_g1_225_TPlot.pdf
TRINITY_DN1607_c1_g1:41	si_s87	TRINITY_DN1607_c1_g1	29	51	41	-32.90	-22.30	0.677811550151976	5	1-7,51-45;9-18,42-33;19-21,31-29	8-8,44-43[AILt];x-x,32-32[BULt]	(((.((((((((((..(((((((&)))))))-.))))))))))-)))	AAGACGAAGAAGAAACAAAGGAA&UUCCUUU-CUUCUUCUUCG-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1607_c1_g1_41_TPlot.pdf
TRINITY_DN1607_c1_g1:42	si_s86	TRINITY_DN1607_c1_g1	30	52	42	-32.90	-21.80	0.662613981762918	5.5	1-8,52-45;10-19,42-33;20-21,31-30	9-9,44-43[AILt];x-x,32-32[BULt]	((.((((((((((..((((((((&))))))))-.))))))))))-))	AGACGAAGAAGAAACAAAGGAAG&UUUCCUUU-CUUCUUCUUCG-CU	2	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1607_c1_g1_42_TPlot.pdf
TRINITY_DN1607_c1_g1:45	si_s84	TRINITY_DN1607_c1_g1	33	56	45	-32.30	-21.30	0.659442724458204	8	1-3,56-54;4-10,51-45;12-21,42-33	x-x,53-52[BULt];11-11,44-43[AILt]	((((((((((..(((((((..(((&)))--)))))))-.))))))))))	CGAAGAAGAAACAAAGGAAGUAGA&UCU--UUCCUUU-CUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1607_c1_g1_45_TPlot.pdf
TRINITY_DN1607_c1_g1:48	si_s81	TRINITY_DN1607_c1_g1	33	59	48	-28.90	-19.00	0.657439446366782	13	1-6,59-54;7-12,51-46;13-20,41-34	x-x,53-52[BULt];x-x,45-42[BULt];21-21,33-33[UP3]	.((((((((....((((((..((((((&))))))--))))))----)))))))).	CGAAGAAGAAACAAAGGAAGUAGAAAA&UUUUCU--UUCCUU----UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1607_c1_g1_48_TPlot.pdf
TRINITY_DN1607_c1_g1:49	si_s80	TRINITY_DN1607_c1_g1	34	60	49	-28.20	-18.80	0.666666666666667	9	2-7,59-54;8-13,51-46;14-21,41-34	1-1,60-60[UP5];x-x,53-52[BULt];x-x,45-42[BULt]	((((((((....((((((..((((((.&.))))))--))))))----))))))))	GAAGAAGAAACAAAGGAAGUAGAAAAC&UUUUUCU--UUCCUU----UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1607_c1_g1_49_TPlot.pdf
TRINITY_DN1608_c0_g1:3278	si_a860	TRINITY_DN1608_c0_g1	3268	3287	3278	-24.30	-16.10	0.662551440329218	5.5	1-12,3287-3276;15-19,3274-3270	13-14,3275-3275[AILq];20-21,3269-3268[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	ACUCUUUU-UGAUUGGAUUUU&GAAAUCCAAUUAUUAAAGAUU	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN1608_c0_g1_3278_TPlot.pdf
TRINITY_DN1608_c0_g1:3286	si_s533	TRINITY_DN1608_c0_g1	3275	3295	3286	-28.80	-19.30	0.670138888888889	9.5	3-8,3293-3288;11-21,3285-3275	1-2,3295-3294[UP5];9-10,3287-3286[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	UUGAUUGGAUUUUAGAUGAAA&AAUCAUUUUUGAUCCGAUCAA	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN1608_c0_g1_3286_TPlot.pdf
TRINITY_DN16091_c0_g1:119	si_s78	TRINITY_DN16091_c0_g1	107	128	119	-26.20	-18.90	0.721374045801527	6.5	1-12,128-117;13-13,115-115;15-21,113-107	x-x,116-116[BULt];14-14,114-114[SIL]	(((((((.(.((((((((((((&))))))))))))-).)))))))	GGAAGAACGAGGAAGAAGAAGA&UUUUUUUCUUUC-CUUUCUUCU	2	0.999999999986512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN16091_c0_g1_119_TPlot.pdf
TRINITY_DN16091_c0_g1:122	si_s90	TRINITY_DN16091_c0_g1	113	131	122	-35.30	-23.70	0.671388101983003	3	1-14,131-118;16-17,117-116;19-20,115-114	15-15,x-x[BULq];18-18,x-x[BULq];21-21,113-113[UP3]	.((-((-((((((((((((((&)))))))))))))).)).)).	ACG-AG-GAAGAAGAAGAAAG&CUUUCUUCUUCUUCGCUUCGG	0	0.48386797080208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN16091_c0_g1_122_TPlot.pdf
TRINITY_DN16091_c0_g1:123	si_s89	TRINITY_DN16091_c0_g1	114	132	123	-35.30	-23.60	0.668555240793201	3	2-15,131-118;17-18,117-116;20-21,115-114	1-1,132-132[UP5];16-16,x-x[BULq];19-19,x-x[BULq]	((-((-((((((((((((((.&.)))))))))))))).)).))	CG-AG-GAAGAAGAAGAAAGA&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999999959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN16091_c0_g1_123_TPlot.pdf
TRINITY_DN16091_c0_g1:125	si_s87	TRINITY_DN16091_c0_g1	115	134	125	-32.90	-22.90	0.696048632218845	6.5	4-17,131-118;19-21,117-115	1-3,134-132[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	GAG-GAAGAAGAAGAAAGAAG&UUCCUUUCUUCUUCUUCGCUU	2	0.999999854687359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN16091_c0_g1_125_TPlot.pdf
TRINITY_DN16091_c0_g1:24	si_s71	TRINITY_DN16091_c0_g1	13	32	24	-25.70	-17.50	0.680933852140078	7	1-5,32-28;7-19,27-15	6-6,x-x[BULq];20-21,14-13[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	AAGAAAGAAGAAGAA-AGAGG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN16091_c0_g1_24_TPlot.pdf
TRINITY_DN1609_c0_g1:1144	si_a884	TRINITY_DN1609_c0_g1	1133	1152	1144	-25.60	-17.50	0.68359375	8.5	1-8,1152-1145;12-20,1142-1134	9-11,1144-1143[AILq];21-21,1133-1133[UP3]	.(((((((((..-((((((((&))))))))...))))))))).	GUGUUGCUGUUA-GAUUGCAA&UUGCAAUCAAUAUAGUAAUAA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN1609_c0_g1_1144_TPlot.pdf
TRINITY_DN1609_c0_g2:28	si_a414	TRINITY_DN1609_c0_g2	17	37	28	-18.10	-12.70	0.701657458563536	5.5	3-8,35-30;10-21,28-17	1-2,37-36[UP5];9-9,29-29[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UGUAUUUAUUUAUAUAUAAUA&GUUUAUAUUUAAAUAAAUAUA	1	0.0735384358224873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN1609_c0_g2_28_TPlot.pdf
TRINITY_DN160_c0_g1:1392	si_a763	TRINITY_DN160_c0_g1	1381	1401	1392	-28.80	-19.00	0.659722222222222	9	4-10,1398-1392;12-16,1390-1386;18-21,1384-1381	1-3,1401-1399[UP5];11-11,1391-1391[SIL];17-17,1385-1385[SIL]	((((.(((((.(((((((...&...))))))).))))).))))	UGAACCAAUCUGAAACCCGUU&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999796303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN160_c0_g1_1392_TPlot.pdf
TRINITY_DN160_c0_g1:1775	si_a574	TRINITY_DN160_c0_g1	1764	1784	1775	-29.60	-19.60	0.662162162162162	5.5	1-7,1784-1778;9-19,1776-1766	8-8,1777-1777[SIL];20-21,1765-1764[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	UAUGUUACAAAUAAACGAUUU&GAAUCGUAUGUUUGUAACAAG	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a574_TRINITY_DN160_c0_g1_1775_TPlot.pdf
TRINITY_DN16100_c0_g1:574	si_a70	TRINITY_DN16100_c0_g1	563	581	574	-23.90	-16.40	0.686192468619247	7.5	1-7,581-575;10-19,574-565	8-9,x-x[BULq];20-21,564-563[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	CUUGAAAGACAA--UGAAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999957624254765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN16100_c0_g1_574_TPlot.pdf
TRINITY_DN16100_c0_g1:575	si_a69	TRINITY_DN16100_c0_g1	564	582	575	-24.00	-16.50	0.6875	7.5	2-8,581-575;11-20,574-565	1-1,582-582[UP5];9-10,x-x[BULq];21-21,564-564[UP3]	.((((((((((--(((((((.&.)))))))..)))))))))).	UUGAAAGACAA--UGAAGGAC&UUCUUUCAAAUUGUUUUUCAU	3	0.999999877072956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN16100_c0_g1_575_TPlot.pdf
TRINITY_DN16100_c0_g1:753	si_a68	TRINITY_DN16100_c0_g1	742	765	753	-25.40	-16.90	0.665354330708661	10.5	1-5,765-761;6-19,757-744	x-x,760-758[BULt];20-21,743-742[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	UUGGAGACAGUUUGAAACCAGAAG&CUUCU---UUCAAAUUGUUUUUCA	2	0.999999948919079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN16100_c0_g1_753_TPlot.pdf
TRINITY_DN16100_c0_g1:754	si_a67	TRINITY_DN16100_c0_g1	743	766	754	-27.20	-21.20	0.779411764705882	9	1-6,766-761;7-20,757-744	x-x,760-758[BULt];21-21,743-743[UP3]	.((((((((((((((...((((((&))))))---)))))))))))))).	UGGAGACAGUUUGAAACCAGAAGC&GCUUCU---UUCAAAUUGUUUUUC	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN16100_c0_g1_754_TPlot.pdf
TRINITY_DN16100_c0_g1:755	si_a66	TRINITY_DN16100_c0_g1	744	767	755	-26.70	-21.30	0.797752808988764	9	2-7,766-761;8-21,757-744	1-1,767-767[UP5];x-x,760-758[BULt]	((((((((((((((...((((((.&.))))))---))))))))))))))	GGAGACAGUUUGAAACCAGAAGCA&CGCUUCU---UUCAAAUUGUUUUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN16100_c0_g1_755_TPlot.pdf
TRINITY_DN16100_c0_g1:756	si_a65	TRINITY_DN16100_c0_g1	745	768	756	-27.70	-21.00	0.75812274368231	10.5	3-8,766-761;9-21,757-745	1-2,768-767[UP5];x-x,760-758[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	GAGACAGUUUGAAACCAGAAGCAG&UCGCUUCU---UUCAAAUUGUUUU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN16100_c0_g1_756_TPlot.pdf
TRINITY_DN16100_c0_g1:757	si_a64	TRINITY_DN16100_c0_g1	746	768	757	-29.40	-19.70	0.670068027210884	9	1-2,768-767;4-9,766-761;10-21,757-746	3-3,x-x[BULq];x-x,760-758[BULt]	((((((((((((...((((((-((&)).))))))---))))))))))))	AGACAGUUUGAAACCAGAAGC-AG&CUCGCUUCU---UUCAAAUUGUUU	2	0.998600396901634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN16100_c0_g1_757_TPlot.pdf
TRINITY_DN16100_c0_g1:783	si_a71	TRINITY_DN16100_c0_g1	772	795	783	-23.30	-15.40	0.660944206008584	11	1-2,795-794;4-7,792-789;8-20,785-773	3-3,793-793[SIL];x-x,788-786[BULt];21-21,772-772[UP3]	.(((((((((((((...((((.((&)).))))---))))))))))))).	AAGUGAAGAACGAUCUCUUGACAG&CUUUCAA---AUUGUUUUUCAUUA	2	0.99999978891265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN16100_c0_g1_783_TPlot.pdf
TRINITY_DN16100_c0_g1:784	si_a70	TRINITY_DN16100_c0_g1	773	797	784	-23.90	-16.00	0.669456066945607	11	1-4,797-794;5-8,792-789;9-21,785-773	x-x,793-793[BULt];x-x,788-786[BULt]	(((((((((((((...((((.((((&))))-))))---)))))))))))))	AGUGAAGAACGAUCUCUUGACAGGA&UCUU-UCAA---AUUGUUUUUCAUU	2	0.999999149145875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN16100_c0_g1_784_TPlot.pdf
TRINITY_DN16100_c0_g1:785	si_a69	TRINITY_DN16100_c0_g1	774	797	785	-24.00	-16.00	0.666666666666667	11	1-4,797-794;6-9,792-789;10-21,785-774	5-5,793-793[SIL];x-x,788-786[BULt]	((((((((((((...((((.((((&)))).))))---))))))))))))	GUGAAGAACGAUCUCUUGACAGGA&UUCUUUCAA---AUUGUUUUUCAU	2	0.99999949553299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN16100_c0_g1_785_TPlot.pdf
TRINITY_DN16100_c0_g1:789	si_a68	TRINITY_DN16100_c0_g1	775	798	789	-25.40	-17.00	0.669291338582677	10	1-5,798-794;7-10,792-789;11-21,785-775	6-6,793-793[SIL];x-x,788-786[BULt]	(((((((((((...((((.(((((&))))).))))---)))))))))))	UGAAGAACGAUCUCUUGACAGGAG&CUUCUUUCAA---AUUGUUUUUCA	3	0.999999999957764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN16100_c0_g1_789_TPlot.pdf
TRINITY_DN16100_c0_g1:790	si_a67	TRINITY_DN16100_c0_g1	776	799	790	-27.20	-19.90	0.731617647058823	10	1-6,799-794;8-11,792-789;12-21,785-776	7-7,793-793[SIL];x-x,788-786[BULt]	((((((((((...((((.((((((&)))))).))))---))))))))))	GAAGAACGAUCUCUUGACAGGAGC&GCUUCUUUCAA---AUUGUUUUUC	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN16100_c0_g1_790_TPlot.pdf
TRINITY_DN16100_c0_g2:765	si_a71	TRINITY_DN16100_c0_g2	754	777	765	-23.30	-15.40	0.660944206008584	11	1-2,777-776;4-7,774-771;8-20,767-755	3-3,775-775[SIL];x-x,770-768[BULt];21-21,754-754[UP3]	.(((((((((((((...((((.((&)).))))---))))))))))))).	AAGUGAAGAACGAUCUCUUGACAG&CUUUCAA---AUUGUUUUUCAUUA	2	0.999999839473867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN16100_c0_g2_765_TPlot.pdf
TRINITY_DN16100_c0_g2:766	si_a70	TRINITY_DN16100_c0_g2	755	779	766	-23.90	-16.00	0.669456066945607	11	1-4,779-776;5-8,774-771;9-21,767-755	x-x,775-775[BULt];x-x,770-768[BULt]	(((((((((((((...((((.((((&))))-))))---)))))))))))))	AGUGAAGAACGAUCUCUUGACAGGA&UCUU-UCAA---AUUGUUUUUCAUU	2	0.999998270355489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN16100_c0_g2_766_TPlot.pdf
TRINITY_DN16100_c0_g2:767	si_a69	TRINITY_DN16100_c0_g2	756	779	767	-24.00	-16.00	0.666666666666667	11	1-4,779-776;6-9,774-771;10-21,767-756	5-5,775-775[SIL];x-x,770-768[BULt]	((((((((((((...((((.((((&)))).))))---))))))))))))	GUGAAGAACGAUCUCUUGACAGGA&UUCUUUCAA---AUUGUUUUUCAU	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN16100_c0_g2_767_TPlot.pdf
TRINITY_DN16100_c0_g2:771	si_a68	TRINITY_DN16100_c0_g2	757	780	771	-25.40	-17.00	0.669291338582677	10	1-5,780-776;7-10,774-771;11-21,767-757	6-6,775-775[SIL];x-x,770-768[BULt]	(((((((((((...((((.(((((&))))).))))---)))))))))))	UGAAGAACGAUCUCUUGACAGGAG&CUUCUUUCAA---AUUGUUUUUCA	3	0.999999999977903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN16100_c0_g2_771_TPlot.pdf
TRINITY_DN16100_c0_g2:772	si_a67	TRINITY_DN16100_c0_g2	758	781	772	-27.20	-19.90	0.731617647058823	10	1-6,781-776;8-11,774-771;12-21,767-758	7-7,775-775[SIL];x-x,770-768[BULt]	((((((((((...((((.((((((&)))))).))))---))))))))))	GAAGAACGAUCUCUUGACAGGAGC&GCUUCUUUCAA---AUUGUUUUUC	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN16100_c0_g2_772_TPlot.pdf
TRINITY_DN16104_c0_g1:2165	si_a279	TRINITY_DN16104_c0_g1	2154	2174	2165	-32.50	-22.30	0.686153846153846	9	4-12,2171-2163;14-20,2161-2155	1-3,2174-2172[UP5];13-13,2162-2162[SIL];21-21,2154-2154[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	UGUCCGAGGGAUCUUUUUAAA&UACGAAAAGAUCGCUUGGAUU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN16104_c0_g1_2165_TPlot.pdf
TRINITY_DN1610_c0_g1:3271	si_s554	TRINITY_DN1610_c0_g1	3260	3280	3271	-25.90	-17.10	0.66023166023166	10	6-21,3275-3260	1-5,3280-3276[UP5]	((((((((((((((((.....&.....))))))))))))))))	UCCGGAAAUAUUAAUUGUCGU&AAUAGAAUUAAUAUUUUCGGG	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN1610_c0_g1_3271_TPlot.pdf
TRINITY_DN1610_c0_g1:3272	si_s553	TRINITY_DN1610_c0_g1	3261	3281	3272	-23.50	-16.00	0.680851063829787	11.5	7-21,3275-3261	1-6,3281-3276[UP5]	(((((((((((((((......&......)))))))))))))))	CCGGAAAUAUUAAUUGUCGUA&AAAUAGAAUUAAUAUUUUCGG	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN1610_c0_g1_3272_TPlot.pdf
TRINITY_DN16110_c0_g1:1357	si_a486	TRINITY_DN16110_c0_g1	1346	1366	1357	-24.90	-16.40	0.65863453815261	8.5	1-14,1366-1353;17-19,1350-1348	15-16,1352-1351[SIL];20-21,1347-1346[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCAUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN16110_c0_g1_1357_TPlot.pdf
TRINITY_DN16110_c2_g1:813	si_a407	TRINITY_DN16110_c2_g1	802	822	813	-19.80	-14.00	0.707070707070707	7.5	1-14,822-809	15-21,808-802[UP3]	.......((((((((((((((&)))))))))))))).......	ACUAUUUUGUAAACAAAACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.999992005192978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN16110_c2_g1_813_TPlot.pdf
TRINITY_DN16110_c2_g1:819	si_a401	TRINITY_DN16110_c2_g1	808	828	819	-22.60	-15.20	0.672566371681416	10.5	6-20,823-809	1-5,828-824[UP5];21-21,808-808[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUGUAAACAAAACAAUCACCU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999993331237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN16110_c2_g1_819_TPlot.pdf
TRINITY_DN16112_c0_g2:54	si_s71	TRINITY_DN16112_c0_g2	43	67	54	-25.70	-18.56	0.722178988326848	14	1-4,67-64;7-20,57-44	5-6,63-58[AILt];21-21,43-43[UP3]	.((((((((((((((......((((&))))----..)))))))))))))).	UGGAAAGAAAAGAAAGUAUGUGAAG&CUUC----UAUUUUUUUUCUUUCCU	4	0.999999999982171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN16112_c0_g2_54_TPlot.pdf
TRINITY_DN16114_c0_g1:212	si_a324	TRINITY_DN16114_c0_g1	195	221	212	-27.50	-18.70	0.68	11	1-2,221-220;4-13,218-209;14-21,202-195	3-3,219-219[SIL];x-x,208-203[BULt]	((((((((......((((((((((.((&)).))))))))))------))))))))	CGAGGAAUACAUACGAAGAAAUCGAGG&CCAUGAUUUUUUU------AUUCCUUG	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN16114_c0_g1_212_TPlot.pdf
TRINITY_DN1611_c0_g1:1961	si_s81	TRINITY_DN1611_c0_g1	1950	1970	1961	-28.90	-19.30	0.667820069204152	10.5	3-6,1968-1965;8-19,1963-1952	1-2,1970-1969[UP5];7-7,1964-1964[SIL];20-21,1951-1950[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	CCAGGAAGAGAGGGUGGAACU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1611_c0_g1_1961_TPlot.pdf
TRINITY_DN1611_c0_g1:2597	si_a545	TRINITY_DN1611_c0_g1	2586	2606	2597	-28.10	-19.50	0.693950177935943	8	2-16,2605-2591	1-1,2606-2606[UP5];17-21,2590-2586[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUCCGAAAUGGAUUGAAUCC&CGGUUCAAUCUAUUUCUUUAU	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN1611_c0_g1_2597_TPlot.pdf
TRINITY_DN1612_c0_g2:1336	si_a852	TRINITY_DN1612_c0_g2	1325	1345	1336	-28.80	-20.40	0.708333333333333	8.5	1-9,1345-1337;11-17,1335-1329	10-10,1336-1336[SIL];18-21,1328-1325[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AGGUUUGGGUUACGGGUUAGC&GCUAACUUGAAAUCCAAUUAU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN1612_c0_g2_1336_TPlot.pdf
TRINITY_DN1612_c0_g2:1369	si_s803	TRINITY_DN1612_c0_g2	1357	1378	1369	-26.00	-18.30	0.703846153846154	6	1-5,1378-1374;7-11,1372-1368;12-20,1366-1358	6-6,1373-1373[SIL];x-x,1367-1367[BULt];21-21,1357-1357[UP3]	.(((((((((.(((((.(((((&))))).)))))-))))))))).	UGGAGGUAACUGAAGAAAAAAU&AUUUUAUCUUC-GUUACCUUUU	3	0.999998813333396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1612_c0_g2_1369_TPlot.pdf
TRINITY_DN1612_c0_g2:1432	si_s55	TRINITY_DN1612_c0_g2	1421	1441	1432	-30.80	-23.60	0.766233766233766	5	1-8,1441-1434;10-11,1432-1431;13-20,1429-1422	9-9,1433-1433[SIL];12-12,1430-1430[SIL];21-21,1421-1421[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	UGAAGUUGCCAAGUUGAAAUC&GAUUUCAAGUUAGCAACUUCU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN1612_c0_g2_1432_TPlot.pdf
TRINITY_DN1612_c0_g2:1433	si_s54	TRINITY_DN1612_c0_g2	1422	1442	1433	-32.50	-23.20	0.713846153846154	4	2-9,1441-1434;11-12,1432-1431;14-21,1429-1422	1-1,1442-1442[UP5];10-10,1433-1433[SIL];13-13,1430-1430[SIL]	((((((((.((.((((((((.&.)))))))).)).))))))))	GAAGUUGCCAAGUUGAAAUCA&GGAUUUCAAGUUAGCAACUUC	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s54_TRINITY_DN1612_c0_g2_1433_TPlot.pdf
TRINITY_DN1612_c0_g2:1682	si_a69	TRINITY_DN1612_c0_g2	1671	1690	1682	-24.00	-15.90	0.6625	10	1-7,1690-1684;11-19,1681-1673	8-10,1683-1682[AILq];20-21,1672-1671[UP3]	..(((((((((..-(((((((&)))))))...)))))))))..	ACGAGAAGCAAGA-GGAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999999396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1612_c0_g2_1682_TPlot.pdf
TRINITY_DN1612_c0_g2:1683	si_a68	TRINITY_DN1612_c0_g2	1672	1691	1683	-25.40	-18.80	0.740157480314961	9	1-8,1691-1684;12-20,1681-1673	9-11,1683-1682[AILq];21-21,1672-1672[UP3]	.(((((((((..-((((((((&))))))))...))))))))).	CGAGAAGCAAGA-GGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1612_c0_g2_1683_TPlot.pdf
TRINITY_DN1612_c0_g2:1687	si_s89	TRINITY_DN1612_c0_g2	1674	1696	1687	-35.30	-27.00	0.764872521246459	4.5	2-15,1695-1682;16-20,1679-1675	1-1,1696-1696[UP5];x-x,1681-1680[BULt];21-21,1674-1674[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	AGAAGCAAGAGGAAGAAGAAAGA&CCUUUCUUCUUCUUC--GCUUCG	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1612_c0_g2_1687_TPlot.pdf
TRINITY_DN16134_c0_g1:219	si_s85	TRINITY_DN16134_c0_g1	207	228	219	-33.80	-22.30	0.659763313609467	6	1-14,228-215;16-18,213-211;20-21,208-207	15-15,214-214[SIL];19-19,210-209[AILt]	((..(((.((((((((((((((&)))))))))))))).)))-.))	GCCAAAGUAGGAGAAGGGAGAG&CUUUCCUUUCUUCUUCUU-CGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN16134_c0_g1_219_TPlot.pdf
TRINITY_DN16134_c0_g1:2599	si_a323	TRINITY_DN16134_c0_g1	2588	2608	2599	-26.80	-20.10	0.75	6	1-17,2608-2592	18-21,2591-2588[UP3]	....(((((((((((((((((&)))))))))))))))))....	AACCGAUAGAAGAAUCAUGGA&UCCAUGAUUUUUUUAUUCCUU	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN16134_c0_g1_2599_TPlot.pdf
TRINITY_DN16136_c0_g1:1302	si_s513	TRINITY_DN16136_c0_g1	1291	1311	1302	-24.90	-18.20	0.730923694779116	4	1-11,1311-1301;13-14,1299-1298;16-21,1296-1291	12-12,1300-1300[SIL];15-15,1297-1297[SIL]	((((((.((.(((((((((((&))))))))))).)).))))))	UUCGAAAUACGAAUAUAGAGU&AUUCUAUAUUCUUAAUUCGAA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN16136_c0_g1_1302_TPlot.pdf
TRINITY_DN16136_c0_g1:1303	si_s512	TRINITY_DN16136_c0_g1	1292	1312	1303	-24.80	-17.60	0.709677419354839	4	2-12,1311-1301;14-15,1299-1298;17-21,1296-1292	1-1,1312-1312[UP5];13-13,1300-1300[SIL];16-16,1297-1297[SIL]	(((((.((.(((((((((((.&.))))))))))).)).)))))	UCGAAAUACGAAUAUAGAGUG&AAUUCUAUAUUCUUAAUUCGA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN16136_c0_g1_1303_TPlot.pdf
TRINITY_DN16136_c0_g1:818	si_s76	TRINITY_DN16136_c0_g1	806	827	818	-23.60	-17.50	0.741525423728813	7	2-5,826-823;7-14,821-814;15-21,812-806	1-1,827-827[UP5];6-6,822-822[SIL];x-x,813-813[BULt]	(((((((.((((((((.((((.&.)))).))))))))-)))))))	GAGAGAGUGAGAGAAAUAAGAA&AUUUUUUUUCUUUC-CUUUCUU	2	0.999999999994563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN16136_c0_g1_818_TPlot.pdf
TRINITY_DN16139_c0_g1:33	si_a322	TRINITY_DN16139_c0_g1	22	48	33	-27.00	-18.64	0.69037037037037	19.5	1-8,48-41;11-21,32-22	9-10,40-33[AILt]	(((((((((((........((((((((&))))))))------..)))))))))))	AGGAGUGGAGGUAAUUAUUUCAUGGAU&AUCCAUGA------UUUUUUUAUUCCU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN16139_c0_g1_33_TPlot.pdf
TRINITY_DN1613_c0_g1:973	si_s39	TRINITY_DN1613_c0_g1	962	982	973	-22.30	-14.60	0.654708520179372	12	5-17,978-966	1-4,982-979[UP5];18-21,965-962[UP3]	....(((((((((((((....&....)))))))))))))....	GUACCCAAUUAUUAAGGUUUG&AAAUCUUUAAUAAUUGGAUUU	4	0.999999742471099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1613_c0_g1_973_TPlot.pdf
TRINITY_DN1613_c0_g1:974	si_s38	TRINITY_DN1613_c0_g1	963	982	974	-22.70	-15.30	0.674008810572687	6.5	1-8,982-975;10-18,974-966	9-9,x-x[BULq];19-21,965-963[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	UACCCAAUUAUU-AAGGUUUG&UAAAUCUUUAAUAAUUGGAUU	2	0.987331012997792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN1613_c0_g1_974_TPlot.pdf
TRINITY_DN1613_c0_g1:975	si_s37	TRINITY_DN1613_c0_g1	964	983	975	-24.40	-18.40	0.754098360655738	6	1-9,983-975;11-19,974-966	10-10,x-x[BULq];20-21,965-964[UP3]	..(((((((((-(((((((((&))))))))).)))))))))..	ACCCAAUUAUU-AAGGUUUGG&CUAAAUCUUUAAUAAUUGGAU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN1613_c0_g1_975_TPlot.pdf
TRINITY_DN16151_c0_g1:1443	si_a459	TRINITY_DN16151_c0_g1	1432	1452	1443	-23.20	-18.50	0.797413793103448	6.5	1-14,1452-1439;16-20,1437-1433	15-15,1438-1438[SIL];21-21,1432-1432[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CUACAUUUUGUGUGUAGCAAU&GUUGUUAUAUAUAAUAUGUAA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN16151_c0_g1_1443_TPlot.pdf
TRINITY_DN1615_c0_g1:597	si_a496	TRINITY_DN1615_c0_g1	586	606	597	-32.40	-21.76	0.671604938271605	12	3-6,604-601;11-21,596-586	1-2,606-605[UP5];7-10,600-597[SIL]	(((((((((((....((((..&..))))....)))))))))))	AGGAAGACGAGCACGGACAGG&UAUGUCGUUUUUCGUCUUCCU	4	0.999999999636922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1615_c0_g1_597_TPlot.pdf
TRINITY_DN16166_c0_g1:1022	si_a140	TRINITY_DN16166_c0_g1	1010	1032	1022	-25.20	-17.80	0.706349206349206	7	1-6,1032-1027;7-12,1025-1020;13-21,1018-1010	x-x,1026-1026[BULt];x-x,1019-1019[BULt]	(((((((((.((((((.((((((&))))))-))))))-)))))))))	AAAGCAAUAUACGAUUCAGUUGC&GUAAUU-AAUCGU-UGUUGUUUU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN16166_c0_g1_1022_TPlot.pdf
TRINITY_DN16166_c0_g1:381	si_a666	TRINITY_DN16166_c0_g1	370	390	381	-31.60	-22.00	0.69620253164557	10	2-7,389-384;9-17,382-374	1-1,390-390[UP5];8-8,383-383[SIL];18-21,373-370[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	UUUAGAGGGGUCAUUGGGCAA&AUGCCUAUUGAUUCCUUAUUC	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN16166_c0_g1_381_TPlot.pdf
TRINITY_DN16166_c0_g1:382	si_a665	TRINITY_DN16166_c0_g1	371	391	382	-29.60	-22.00	0.743243243243243	10.5	3-8,389-384;10-18,382-374	1-2,391-390[UP5];9-9,383-383[SIL];19-21,373-371[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	UUAGAGGGGUCAUUGGGCAAU&AAUGCCUAUUGAUUCCUUAUU	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN16166_c0_g1_382_TPlot.pdf
TRINITY_DN16166_c0_g1:383	si_a664	TRINITY_DN16166_c0_g1	372	392	383	-29.60	-22.00	0.743243243243243	11.5	4-9,389-384;11-19,382-374	1-3,392-390[UP5];10-10,383-383[SIL];20-21,373-372[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	UAGAGGGGUCAUUGGGCAAUA&AAAUGCCUAUUGAUUCCUUAU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN16166_c0_g1_383_TPlot.pdf
TRINITY_DN16166_c0_g1:465	si_a456	TRINITY_DN16166_c0_g1	454	474	465	-22.80	-15.00	0.657894736842105	11	4-18,471-457	1-3,474-472[UP5];19-21,456-454[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAGGUUAUGUAUGAUAACUGC&AUUGUUGUUAUAUAUAAUAUG	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN16166_c0_g1_465_TPlot.pdf
TRINITY_DN16166_c0_g1:466	si_a455	TRINITY_DN16166_c0_g1	455	475	466	-21.10	-15.00	0.710900473933649	12	5-19,471-457	1-4,475-472[UP5];20-21,456-455[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGGUUAUGUAUGAUAACUGCC&AAUUGUUGUUAUAUAUAAUAU	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN16166_c0_g1_466_TPlot.pdf
TRINITY_DN16166_c0_g1:467	si_a454	TRINITY_DN16166_c0_g1	456	476	467	-21.30	-15.00	0.704225352112676	13	6-20,471-457	1-5,476-472[UP5];21-21,456-456[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUUAUGUAUGAUAACUGCCA&UAAUUGUUGUUAUAUAUAAUA	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN16166_c0_g1_467_TPlot.pdf
TRINITY_DN1616_c0_g1:2869	si_a500	TRINITY_DN1616_c0_g1	2858	2878	2869	-34.40	-22.60	0.656976744186047	7	2-2,2877-2877;4-11,2875-2868;13-21,2866-2858	1-1,2878-2878[UP5];3-3,2876-2876[SIL];12-12,2867-2867[SIL]	(((((((((.((((((((.(.&.).)))))))).)))))))))	UCUAGGGAAUACGAAAGAGGG&UCGUUUUUCGUCUUCCUUGGA	3	0.999999999768692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1616_c0_g1_2869_TPlot.pdf
TRINITY_DN1616_c0_g1:2880	si_s70	TRINITY_DN1616_c0_g1	2869	2890	2880	-25.80	-16.80	0.651162790697674	10	1-5,2890-2886;8-20,2882-2870	6-7,2885-2883[AILt];21-21,2869-2869[UP3]	.(((((((((((((...(((((&)))))-..))))))))))))).	CGAAAGAGGGAGAAGUCGAAGU&ACUUC-UAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1616_c0_g1_2880_TPlot.pdf
TRINITY_DN1616_c0_g1:3240	si_a60	TRINITY_DN1616_c0_g1	3229	3251	3240	-32.20	-21.60	0.670807453416149	9.5	1-6,3251-3246;7-8,3244-3243;9-16,3241-3234	x-x,3245-3245[BULt];x-x,3242-3242[BULt];17-21,3233-3229[UP3]	.....((((((((.((.((((((&))))))-))-)))))))).....	AAAGAGAGAGAAGUCGAAGUCGA&UCGACU-CG-CUUCUUUCAAAUU	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN1616_c0_g1_3240_TPlot.pdf
TRINITY_DN1616_c0_g1:3262	si_s316	TRINITY_DN1616_c0_g1	3251	3270	3262	-31.50	-20.60	0.653968253968254	8	1-5,3270-3266;7-16,3265-3256	6-6,x-x[BULq];17-21,3255-3251[UP3]	.....((((((((((-(((((&))))).)))))))))).....	AGAAAGGCAAGAAGG-CAGAA&UUCUGUCCUUCUUGUUACAAA	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1616_c0_g1_3262_TPlot.pdf
TRINITY_DN1616_c0_g1:3263	si_s315	TRINITY_DN1616_c0_g1	3252	3271	3263	-31.60	-20.60	0.651898734177215	8	2-6,3270-3266;8-17,3265-3256	1-1,3271-3271[UP5];7-7,x-x[BULq];18-21,3255-3252[UP3]	....((((((((((-(((((.&.))))).))))))))))....	GAAAGGCAAGAAGG-CAGAAA&AUUCUGUCCUUCUUGUUACAA	3	0.999999945301483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN1616_c0_g1_3263_TPlot.pdf
TRINITY_DN1616_c0_g1:3265	si_s313	TRINITY_DN1616_c0_g1	3254	3273	3265	-30.80	-20.60	0.668831168831169	10	4-8,3270-3266;10-19,3265-3256	1-3,3273-3271[UP5];9-9,x-x[BULq];20-21,3255-3254[UP3]	..((((((((((-(((((...&...))))).))))))))))..	AAGGCAAGAAGG-CAGAAAAG&AAAUUCUGUCCUUCUUGUUAC	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN1616_c0_g1_3265_TPlot.pdf
TRINITY_DN1616_c0_g1:3632	si_a2	TRINITY_DN1616_c0_g1	3622	3641	3632	-30.70	-21.90	0.713355048859935	2.5	1-13,3641-3629;15-20,3628-3623	14-14,x-x[BULq];21-21,3622-3622[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	CGUUUUC-CUUCAAUUUCAAU&AUUGAAAUUGAAGAGAAAGCC	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a2_TRINITY_DN1616_c0_g1_3632_TPlot.pdf
TRINITY_DN16177_c0_g1:193	si_a400	TRINITY_DN16177_c0_g1	182	202	193	-22.80	-14.90	0.653508771929825	9	1-14,202-189	15-21,188-182[UP3]	.......((((((((((((((&)))))))))))))).......	UAACCUAAAAGCAAUUCUGUA&UAUAGAAUUGUUUUGUUUAUA	4	0.999999999995143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN16177_c0_g1_193_TPlot.pdf
TRINITY_DN16177_c0_g1:194	si_a399	TRINITY_DN16177_c0_g1	183	203	194	-22.60	-14.90	0.65929203539823	9	2-15,202-189	1-1,203-203[UP5];16-21,188-183[UP3]	......((((((((((((((.&.))))))))))))))......	AACCUAAAAGCAAUUCUGUAA&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999744379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN16177_c0_g1_194_TPlot.pdf
TRINITY_DN1617_c0_g1:165	si_a351	TRINITY_DN1617_c0_g1	154	174	165	-20.50	-13.70	0.668292682926829	6.5	3-11,172-164;13-21,162-154	1-2,174-173[UP5];12-12,163-163[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUCAAAAUGAAGUUAAUAUGU&AAAUAUUAAUUCUAUUUUGAU	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN1617_c0_g1_165_TPlot.pdf
TRINITY_DN1617_c0_g1:377	si_a472	TRINITY_DN1617_c0_g1	366	390	377	-21.50	-14.80	0.688372093023256	11.5	2-9,389-382;10-20,377-367	1-1,390-390[UP5];x-x,381-378[BULt];21-21,366-366[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	CAUAUGACAAUAUUUAAUUACAUGG&AUAUGUAAU----UAUUGUUAUAUA	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1617_c0_g1_377_TPlot.pdf
TRINITY_DN16188_c0_g1:1034	si_s82	TRINITY_DN16188_c0_g1	1023	1043	1034	-28.90	-20.80	0.719723183391003	8.5	4-14,1040-1030;16-20,1028-1024	1-3,1043-1041[UP5];15-15,1029-1029[SIL];21-21,1023-1023[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	UGGAAGUAGAAAGGAGAGCUG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN16188_c0_g1_1034_TPlot.pdf
TRINITY_DN16188_c0_g1:1035	si_s81	TRINITY_DN16188_c0_g1	1024	1044	1035	-28.90	-20.80	0.719723183391003	9.5	5-15,1040-1030;17-21,1028-1024	1-4,1044-1041[UP5];16-16,1029-1029[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GGAAGUAGAAAGGAGAGCUGA&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN16188_c0_g1_1035_TPlot.pdf
TRINITY_DN16188_c0_g1:1047	si_s75	TRINITY_DN16188_c0_g1	1030	1056	1047	-24.00	-16.20	0.675	17.5	3-11,1054-1046;12-21,1039-1030	1-2,1056-1055[UP5];x-x,1045-1040[BULt]	((((((((((......(((((((((..&..)))))))))------))))))))))	AGAAAGGAGAGCUGAUGAAGAAAGAGA&UAUUUUUUUUC------UUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN16188_c0_g1_1047_TPlot.pdf
TRINITY_DN16196_c0_g1:33	si_s69	TRINITY_DN16196_c0_g1	22	43	33	-23.40	-18.10	0.773504273504274	8.5	3-7,41-37;9-21,34-22	1-2,43-42[UP5];8-8,36-35[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GAAAGAAGAAGAAGAAGAAGAA&AACUUCU-AUUUUUUUUCUUUC	4	0.999953229570889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN16196_c0_g1_33_TPlot.pdf
TRINITY_DN16198_c3_g1:191	si_a180	TRINITY_DN16198_c3_g1	180	200	191	-32.10	-21.30	0.663551401869159	5.5	1-4,200-197;6-19,195-182	5-5,196-196[SIL];20-21,181-180[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	CAGGAAAGAUAUUAUUCAGAU&GUCUAGAUAAUAUCUUUCCCU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN16198_c3_g1_191_TPlot.pdf
TRINITY_DN1619_c0_g1:457	si_a76	TRINITY_DN1619_c0_g1	446	466	457	-21.20	-14.10	0.665094339622642	10.5	2-16,465-451	1-1,466-466[UP5];17-21,450-446[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAUCUUAGUGGAAGACGGUUA&AAAUUGUUUUUCAUUAUUAAG	4	0.99999999993179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1619_c0_g1_457_TPlot.pdf
TRINITY_DN1619_c0_g1:509	si_a309	TRINITY_DN1619_c0_g1	498	520	509	-33.60	-22.90	0.681547619047619	8	1-8,520-513;9-18,510-501	x-x,512-511[BULt];19-21,500-498[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	AACUGGAUAAAUCAACAAGCGGA&UUCGCUUG--GAUUUAUCCAUGA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN1619_c0_g1_509_TPlot.pdf
TRINITY_DN1619_c0_g1:510	si_a308	TRINITY_DN1619_c0_g1	499	521	510	-32.70	-22.90	0.700305810397553	8	2-9,520-513;10-19,510-501	1-1,521-521[UP5];x-x,512-511[BULt];20-21,500-499[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	ACUGGAUAAAUCAACAAGCGGAG&AUUCGCUUG--GAUUUAUCCAUG	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN1619_c0_g1_510_TPlot.pdf
TRINITY_DN1619_c0_g1:514	si_a306	TRINITY_DN1619_c0_g1	501	523	514	-33.50	-22.80	0.680597014925373	10	4-11,520-513;12-21,510-501	1-3,523-521[UP5];x-x,512-511[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	UGGAUAAAUCAACAAGCGGAGAG&AGAUUCGCUUG--GAUUUAUCCA	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN1619_c0_g1_514_TPlot.pdf
TRINITY_DN1619_c0_g1:525	si_s86	TRINITY_DN1619_c0_g1	515	534	525	-32.90	-21.90	0.665653495440729	5	1-8,534-527;10-13,525-522;15-21,521-515	9-9,526-526[SIL];14-14,x-x[BULq]	(((((((-((((.((((((((&)))))))).)))).)))))))	AGCGGAG-AGAGAAAAGGAAG&UUUCCUUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1619_c0_g1_525_TPlot.pdf
TRINITY_DN161_c0_g1:7125	si_a557	TRINITY_DN161_c0_g1	7114	7135	7125	-33.40	-24.00	0.718562874251497	10.5	3-4,7133-7132;6-18,7129-7117	1-2,7135-7134[UP5];5-5,7131-7130[AILt];19-21,7116-7114[UP3]	...(((((((((((((..((..&..))-.)))))))))))))...	CUGCGCGGGGAGAUAAUUGACC&UUUC-UUUAUCUCCCCGUGAAU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN161_c0_g1_7125_TPlot.pdf
TRINITY_DN161_c0_g1:7126	si_a556	TRINITY_DN161_c0_g1	7115	7136	7126	-33.40	-24.00	0.718562874251497	11.5	4-5,7133-7132;7-19,7129-7117	1-3,7136-7134[UP5];6-6,7131-7130[AILt];20-21,7116-7115[UP3]	..(((((((((((((..((...&...))-.)))))))))))))..	UGCGCGGGGAGAUAAUUGACCC&AUUUC-UUUAUCUCCCCGUGAA	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN161_c0_g1_7126_TPlot.pdf
TRINITY_DN161_c0_g1:7127	si_a555	TRINITY_DN161_c0_g1	7116	7137	7127	-33.70	-24.00	0.712166172106825	12.5	5-6,7133-7132;8-20,7129-7117	1-4,7137-7134[UP5];7-7,7131-7130[AILt];21-21,7116-7116[UP3]	.(((((((((((((..((....&....))-.))))))))))))).	GCGCGGGGAGAUAAUUGACCCA&UAUUUC-UUUAUCUCCCCGUGA	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN161_c0_g1_7127_TPlot.pdf
TRINITY_DN161_c0_g1:7128	si_a554	TRINITY_DN161_c0_g1	7117	7138	7128	-34.40	-23.80	0.691860465116279	13.5	6-7,7133-7132;9-21,7129-7117	1-5,7138-7134[UP5];8-8,7131-7130[AILt]	(((((((((((((..((.....&.....))-.)))))))))))))	CGCGGGGAGAUAAUUGACCCAC&CUAUUUC-UUUAUCUCCCCGUG	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN161_c0_g1_7128_TPlot.pdf
TRINITY_DN1620_c3_g1:327	si_a471	TRINITY_DN1620_c3_g1	316	336	327	-21.10	-14.20	0.672985781990521	13	5-17,332-320	1-4,336-333[UP5];18-21,319-316[UP3]	....(((((((((((((....&....)))))))))))))....	CAUGGACAGUAAUUGCAAACU&AAUAUGUAAUUAUUGUUAUAU	3	0.999995920298892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN1620_c3_g1_327_TPlot.pdf
TRINITY_DN1621_c0_g1:1262	si_a799	TRINITY_DN1621_c0_g1	1251	1271	1262	-32.50	-22.20	0.683076923076923	5.5	2-9,1270-1263;11-15,1261-1257;17-21,1255-1251	1-1,1271-1271[UP5];10-10,1262-1262[SIL];16-16,1256-1256[SIL]	(((((.(((((.((((((((.&.)))))))).))))).)))))	UUCGCCUUGGACUGGAAGAUU&UAUUUUCCAAUCCGAAGCGAA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN1621_c0_g1_1262_TPlot.pdf
TRINITY_DN1621_c0_g1:422	si_a407	TRINITY_DN1621_c0_g1	410	431	422	-19.80	-13.00	0.656565656565657	9.5	1-10,431-422;12-18,419-413	11-11,421-420[AILt];19-21,412-410[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	AACUAAAUAUUUAGCAGAACAG&UUGUUUUGUU-UAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1621_c0_g1_422_TPlot.pdf
TRINITY_DN1621_c0_g1:675	si_a884	TRINITY_DN1621_c0_g1	664	684	675	-25.60	-17.40	0.6796875	9.5	1-11,684-674;13-17,672-668	12-12,673-673[SIL];18-21,667-664[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CUGGUGCUGGGUUGGUUGCAG&UUGCAAUCAAUAUAGUAAUAA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN1621_c0_g1_675_TPlot.pdf
TRINITY_DN1621_c0_g1:678	si_a881	TRINITY_DN1621_c0_g1	667	687	678	-27.80	-23.00	0.827338129496403	6	1-14,687-674;16-20,672-668	15-15,673-673[SIL];21-21,667-667[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	GUGCUGGGUUGGUUGCAGCUG&UAGUUGCAAUCAAUAUAGUAA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN1621_c0_g1_678_TPlot.pdf
TRINITY_DN1621_c0_g1:680	si_a879	TRINITY_DN1621_c0_g1	669	689	680	-27.40	-21.80	0.795620437956204	8.5	3-16,687-674;18-21,672-669	1-2,689-688[UP5];17-17,673-673[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GCUGGGUUGGUUGCAGCUGCA&UUUAGUUGCAAUCAAUAUAGU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN1621_c0_g1_680_TPlot.pdf
TRINITY_DN16222_c0_g1:268	si_s184	TRINITY_DN16222_c0_g1	257	278	268	-33.40	-23.30	0.697604790419162	7.5	1-6,278-273;7-8,271-270;10-20,268-258	x-x,272-272[BULt];9-9,269-269[SIL];21-21,257-257[UP3]	.(((((((((((.((.((((((&))))))-)).))))))))))).	AAAAAUGGUCGUGGCAUCGGGU&GCCCGA-GUAACGAUUAUUUUG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN16222_c0_g1_268_TPlot.pdf
TRINITY_DN16225_c0_g1:136	si_a898	TRINITY_DN16225_c0_g1	125	145	136	-20.50	-14.50	0.707317073170732	7	1-2,145-144;4-8,142-138;10-21,136-125	3-3,143-143[SIL];9-9,137-137[SIL]	((((((((((((.(((((.((&)).))))).))))))))))))	UUUUGUGUUACUAAUUGUAGC&GUAAUAAUAAGUAAUAUAAAA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN16225_c0_g1_136_TPlot.pdf
TRINITY_DN16225_c0_g1:137	si_a897	TRINITY_DN16225_c0_g1	126	146	137	-21.20	-13.80	0.650943396226415	8	2-3,145-144;5-9,142-138;11-21,136-126	1-1,146-146[UP5];4-4,143-143[SIL];10-10,137-137[SIL]	(((((((((((.(((((.((.&.)).))))).)))))))))))	UUUGUGUUACUAAUUGUAGCA&AGUAAUAAUAAGUAAUAUAAA	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN16225_c0_g1_137_TPlot.pdf
TRINITY_DN16225_c0_g1:346	si_a316	TRINITY_DN16225_c0_g1	335	355	346	-26.30	-17.90	0.680608365019011	10	1-12,355-344	13-21,343-335[UP3]	.........((((((((((((&)))))))))))).........	CAUUACAGAAUGGAUAGAUCC&GGAUUUAUCCAUGAUUUUUUU	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN16225_c0_g1_346_TPlot.pdf
TRINITY_DN16225_c0_g1:347	si_a315	TRINITY_DN16225_c0_g1	336	356	347	-27.00	-18.00	0.666666666666667	10	2-13,355-344	1-1,356-356[UP5];14-21,343-336[UP3]	........((((((((((((.&.))))))))))))........	AUUACAGAAUGGAUAGAUCCG&UGGAUUUAUCCAUGAUUUUUU	3	0.999994126720142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN16225_c0_g1_347_TPlot.pdf
TRINITY_DN16225_c0_g1:348	si_a314	TRINITY_DN16225_c0_g1	337	357	348	-27.10	-18.00	0.664206642066421	11	3-14,355-344	1-2,357-356[UP5];15-21,343-337[UP3]	.......((((((((((((..&..)))))))))))).......	UUACAGAAUGGAUAGAUCCGU&UUGGAUUUAUCCAUGAUUUUU	2	0.999766846148548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN16225_c0_g1_348_TPlot.pdf
TRINITY_DN16228_c0_g1:1454	si_a329	TRINITY_DN16228_c0_g1	1443	1463	1454	-29.60	-19.50	0.658783783783784	10	2-6,1462-1458;9-19,1455-1445	1-1,1463-1463[UP5];7-8,1457-1456[SIL];20-21,1444-1443[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	UUGGACAAGGAAUUUGAGGAA&AUUUUUUUAUUCCUUGUCCCG	4	0.999999993731687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN16228_c0_g1_1454_TPlot.pdf
TRINITY_DN16243_c1_g1:1735	si_a406	TRINITY_DN16243_c1_g1	1723	1744	1735	-19.80	-13.40	0.676767676767677	9	3-12,1742-1733;13-21,1731-1723	1-2,1744-1743[UP5];x-x,1732-1732[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	UUUGGAUAUAGAAUAAGACAUA&AUUGUUUUGUUU-AUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN16243_c1_g1_1735_TPlot.pdf
TRINITY_DN16243_c1_g1:2235	si_s265	TRINITY_DN16243_c1_g1	2224	2244	2235	-26.10	-17.30	0.662835249042146	5.5	2-14,2243-2231;16-19,2229-2226	1-1,2244-2244[UP5];15-15,2230-2230[SIL];20-21,2225-2224[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	GAGUUGUUUUUUUUGGGUAAA&AUUACUCAAAAAAAUCGACAU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s265_TRINITY_DN16243_c1_g1_2235_TPlot.pdf
TRINITY_DN16243_c3_g1:347	si_s131	TRINITY_DN16243_c3_g1	336	364	347	-26.70	-17.90	0.670411985018727	20	3-8,362-357;9-21,348-336	1-2,364-363[UP5];x-x,356-349[BULt]	(((((((((((((........((((((..&..))))))--------)))))))))))))	UUUUUGAUUGAUUUUUUCAUACGACUCAC&AAGAGUUG--------AAUCAAUCAAAAA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN16243_c3_g1_347_TPlot.pdf
TRINITY_DN16245_c0_g1:3233	si_s65	TRINITY_DN16245_c0_g1	3222	3241	3233	-26.00	-17.10	0.657692307692308	8.5	3-5,3239-3237;7-19,3236-3224	1-2,3241-3240[UP5];6-6,x-x[BULq];20-21,3223-3222[UP3]	..(((((((((((((-(((..&..))).)))))))))))))..	CUGAAGAAGUAGAAG-UGCAU&UAGCAACUUCUAUUUUUUUUC	3	0.999999950567046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN16245_c0_g1_3233_TPlot.pdf
TRINITY_DN16249_c0_g1:1922	si_s76	TRINITY_DN16249_c0_g1	1911	1931	1922	-23.60	-19.20	0.813559322033898	6.5	2-11,1930-1921;13-20,1919-1912	1-1,1931-1931[UP5];12-12,1920-1920[SIL];21-21,1911-1911[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UGGAAAGGAUAGAAAAGAAGG&AUUUUUUUUCUUUCCUUUCUU	3	0.99999520307726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN16249_c0_g1_1922_TPlot.pdf
TRINITY_DN1624_c0_g1:435	si_s72	TRINITY_DN1624_c0_g1	424	444	435	-24.10	-16.40	0.680497925311203	5	1-17,444-428;19-20,426-425	18-18,427-427[SIL];21-21,424-424[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	CAGUAAGGGAAGAAAAUGGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1624_c0_g1_435_TPlot.pdf
TRINITY_DN1624_c0_g1:704	si_s803	TRINITY_DN1624_c0_g1	693	713	704	-26.00	-18.50	0.711538461538462	8	2-5,712-709;7-13,707-701;16-21,698-693	1-1,713-713[UP5];6-6,708-708[SIL];14-15,700-699[SIL]	((((((..(((((((.((((.&.)))).)))))))..))))))	AGAAGGGAGCGAAGAAGAGAA&AUUUUAUCUUCGUUACCUUUU	3	0.999984791192561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1624_c0_g1_704_TPlot.pdf
TRINITY_DN1624_c0_g1:705	si_s802	TRINITY_DN1624_c0_g1	694	714	705	-26.40	-17.70	0.670454545454545	10	3-6,712-709;8-14,707-701;17-21,698-694	1-2,714-713[UP5];7-7,708-708[SIL];15-16,700-699[SIL]	(((((..(((((((.((((..&..)))).)))))))..)))))	GAAGGGAGCGAAGAAGAGAAG&UAUUUUAUCUUCGUUACCUUU	2	0.999991057568356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1624_c0_g1_705_TPlot.pdf
TRINITY_DN16252_c0_g1:87	si_a63	TRINITY_DN16252_c0_g1	76	97	87	-30.20	-20.00	0.662251655629139	8.5	2-6,96-92;7-14,90-83;17-21,80-76	1-1,97-97[UP5];x-x,91-91[BULt];15-16,82-81[SIL]	(((((..((((((((.(((((.&.)))))-))))))))..)))))	GACAAACUGGAGGAAGGCGGGG&ACUCGC-UUCUUUCAAAUUGUU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN16252_c0_g1_87_TPlot.pdf
TRINITY_DN16252_c0_g1:93	si_a500	TRINITY_DN16252_c0_g1	82	101	93	-34.40	-22.70	0.659883720930233	9	1-7,101-95;9-18,94-85;20-20,83-83	8-8,x-x[BULq];19-19,84-84[SIL];21-21,82-82[UP3]	.(.((((((((((-(((((((&))))))).)))))))))).).	CUGGAGGAAGGCG-GGGACGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999999999266631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN16252_c0_g1_93_TPlot.pdf
TRINITY_DN16252_c0_g1:94	si_a499	TRINITY_DN16252_c0_g1	83	102	94	-35.20	-25.90	0.735795454545454	8	1-8,102-95;10-19,94-85;21-21,83-83	9-9,x-x[BULq];20-20,84-84[SIL]	(.((((((((((-((((((((&)))))))).)))))))))).)	UGGAGGAAGGCG-GGGACGAC&GUCGUUUUUCGUCUUCCUUGG	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN16252_c0_g1_94_TPlot.pdf
TRINITY_DN1625_c0_g1:2022	si_a766	TRINITY_DN1625_c0_g1	2011	2037	2022	-30.50	-20.90	0.685245901639344	14.5	1-5,2037-2033;6-13,2026-2019;15-21,2017-2011	x-x,2032-2027[BULt];14-14,2018-2018[SIL]	(((((((.((((((((......(((((&)))))------)))))))).)))))))	AGUUGGACCAAUCAAAAAAUUGGACCC&GGGUU------UUUGAUUGAUUCAACU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN1625_c0_g1_2022_TPlot.pdf
TRINITY_DN16265_c1_g1:1277	si_a470	TRINITY_DN16265_c1_g1	1266	1286	1277	-21.30	-14.60	0.685446009389671	9	5-10,1282-1277;12-21,1275-1266	1-4,1286-1283[UP5];11-11,1276-1276[SIL]	((((((((((.((((((....&....)))))).))))))))))	UAUAACAAUAUUUACAUUGAA&UAAUAUGUAAUUAUUGUUAUA	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN16265_c1_g1_1277_TPlot.pdf
TRINITY_DN1626_c0_g1:1499	si_a226	TRINITY_DN1626_c0_g1	1485	1508	1499	-27.60	-20.20	0.731884057971014	6	2-15,1507-1494;16-21,1490-1485	1-1,1508-1508[UP5];x-x,1493-1491[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	GUUGGUCUUUAUAGAAAUAUGAGA&ACUCAUGUUUCUAUA---AUCAAU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN1626_c0_g1_1499_TPlot.pdf
TRINITY_DN1626_c0_g1:1501	si_a224	TRINITY_DN1626_c0_g1	1490	1510	1501	-27.40	-18.30	0.667883211678832	9	4-18,1507-1493	1-3,1510-1508[UP5];19-21,1492-1490[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCUUUAUAGAAAUAUGAGAAA&AAACUCAUGUUUCUAUAAUCA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN1626_c0_g1_1501_TPlot.pdf
TRINITY_DN1626_c0_g1:1505	si_a220	TRINITY_DN1626_c0_g1	1494	1514	1505	-25.10	-17.30	0.689243027888446	13.5	8-21,1507-1494	1-7,1514-1508[UP5]	((((((((((((((.......&.......))))))))))))))	UAUAGAAAUAUGAGAAAAUGA&AAUUAAACUCAUGUUUCUAUA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN1626_c0_g1_1505_TPlot.pdf
TRINITY_DN1626_c0_g1:158	si_a330	TRINITY_DN1626_c0_g1	142	167	158	-30.50	-20.50	0.672131147540984	8.5	1-12,167-156;13-15,154-152;16-20,147-143	x-x,155-155[BULt];x-x,151-148[BULt];21-21,142-142[UP3]	.(((((....(((.((((((((((((&))))))))))))-)))----))))).	CCGGGAUGUACAGCGGAAUGAAAAAA&UUUUUUUAUUCC-UUG----UCCCGA	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN1626_c0_g1_158_TPlot.pdf
TRINITY_DN1626_c0_g1:159	si_a329	TRINITY_DN1626_c0_g1	143	168	159	-29.60	-19.70	0.66554054054054	7.5	2-13,167-156;14-16,154-152;17-21,147-143	1-1,168-168[UP5];x-x,155-155[BULt];x-x,151-148[BULt]	(((((....(((.((((((((((((.&.))))))))))))-)))----)))))	CGGGAUGUACAGCGGAAUGAAAAAAA&AUUUUUUUAUUCC-UUG----UCCCG	4	0.999999908254907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1626_c0_g1_159_TPlot.pdf
TRINITY_DN1626_c0_g1:201	si_a371	TRINITY_DN1626_c0_g1	189	210	201	-30.30	-20.60	0.67986798679868	5.5	3-15,208-196;16-20,194-190	1-2,210-209[UP5];x-x,195-195[BULt];21-21,189-189[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	ACGAAACUUAUUUUUGAUCCUC&UCGGAUCAAAAAUGA-UUUCGA	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN1626_c0_g1_201_TPlot.pdf
TRINITY_DN1626_c0_g1:93	si_a19	TRINITY_DN1626_c0_g1	82	101	93	-27.00	-18.90	0.7	5	1-4,101-98;6-19,97-84	5-5,x-x[BULq];20-21,83-82[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	UUGACUGAAAAUAAAU-GGCU&AGCCUAUUUAUUUUUAGUUCU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN1626_c0_g1_93_TPlot.pdf
TRINITY_DN1626_c0_g1:94	si_a18	TRINITY_DN1626_c0_g1	83	102	94	-26.30	-19.10	0.726235741444867	5	2-5,101-98;7-20,97-84	1-1,102-102[UP5];6-6,x-x[BULq];21-21,83-83[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	UGACUGAAAAUAAAU-GGCUC&AAGCCUAUUUAUUUUUAGUUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN1626_c0_g1_94_TPlot.pdf
TRINITY_DN1626_c0_g1:96	si_a16	TRINITY_DN1626_c0_g1	85	104	96	-26.30	-18.00	0.684410646387833	7.5	4-7,101-98;9-21,97-85	1-3,104-102[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	ACUGAAAAUAAAU-GGCUCCA&GAAAGCCUAUUUAUUUUUAGU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1626_c0_g1_96_TPlot.pdf
TRINITY_DN16270_c6_g1:117	si_a459	TRINITY_DN16270_c6_g1	106	126	117	-23.20	-15.90	0.685344827586207	9	1-15,126-112	16-21,111-106[UP3]	......(((((((((((((((&)))))))))))))))......	GUUUCAAUUGUAUGUAACGAC&GUUGUUAUAUAUAAUAUGUAA	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN16270_c6_g1_117_TPlot.pdf
TRINITY_DN16270_c6_g1:118	si_a458	TRINITY_DN16270_c6_g1	107	127	118	-23.80	-16.10	0.676470588235294	8.5	2-16,126-112	1-1,127-127[UP5];17-21,111-107[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUCAAUUGUAUGUAACGACU&UGUUGUUAUAUAUAAUAUGUA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN16270_c6_g1_118_TPlot.pdf
TRINITY_DN16270_c6_g1:121	si_a455	TRINITY_DN16270_c6_g1	110	130	121	-21.10	-16.10	0.76303317535545	11.5	5-19,126-112	1-4,130-127[UP5];20-21,111-110[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAUUGUAUGUAACGACUAAA&AAUUGUUGUUAUAUAUAAUAU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN16270_c6_g1_121_TPlot.pdf
TRINITY_DN16270_c6_g1:122	si_a454	TRINITY_DN16270_c6_g1	111	131	122	-21.30	-16.10	0.755868544600939	12	6-20,126-112	1-5,131-127[UP5];21-21,111-111[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAUUGUAUGUAACGACUAAAA&UAAUUGUUGUUAUAUAUAAUA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN16270_c6_g1_122_TPlot.pdf
TRINITY_DN16272_c0_g1:177	si_a454	TRINITY_DN16272_c0_g1	167	186	177	-21.30	-15.10	0.708920187793427	4.5	3-12,184-175;14-21,174-167	1-2,186-185[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	UAUUAUGU-UAACAACAAUCA&UAAUUGUUGUUAUAUAUAAUA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN16272_c0_g1_177_TPlot.pdf
TRINITY_DN16272_c0_g2:1268	si_s515	TRINITY_DN16272_c0_g2	1257	1276	1268	-24.80	-16.40	0.661290322580645	8	1-7,1276-1270;9-17,1269-1261	8-8,x-x[BULq];18-21,1260-1257[UP3]	....(((((((((-(((((((&))))))).)))))))))....	GUGACGAAUUAGG-AUAUGGA&UCUAUAUUCUUAAUUCGAAAU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN16272_c0_g2_1268_TPlot.pdf
TRINITY_DN16272_c0_g2:1270	si_s512	TRINITY_DN16272_c0_g2	1260	1279	1270	-24.80	-16.50	0.665322580645161	9.5	4-10,1276-1270;12-20,1269-1261	1-3,1279-1277[UP5];11-11,x-x[BULq];21-21,1260-1260[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	ACGAAUUAGG-AUAUGGACUU&AAUUCUAUAUUCUUAAUUCGA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN16272_c0_g2_1270_TPlot.pdf
TRINITY_DN16272_c0_g2:1271	si_s511	TRINITY_DN16272_c0_g2	1261	1283	1271	-25.50	-16.90	0.662745098039216	9.5	1-4,1283-1280;5-11,1276-1270;13-21,1269-1261	x-x,1279-1277[BULt];12-12,x-x[BULq]	(((((((((-(((((((...((((&))))---))))))).)))))))))	CGAAUUAGG-AUAUGGACUUAUUG&CAAU---UCUAUAUUCUUAAUUCG	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN16272_c0_g2_1271_TPlot.pdf
TRINITY_DN16272_c0_g2:2038	si_a557	TRINITY_DN16272_c0_g2	2027	2047	2038	-33.40	-22.30	0.667664670658683	8.5	1-7,2047-2041;9-17,2039-2031	8-8,2040-2040[SIL];18-21,2030-2027[UP3]	....(((((((((.(((((((&))))))).)))))))))....	UCCAAUGGGGAGAAGAAGGAA&UUUCUUUAUCUCCCCGUGAAU	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN16272_c0_g2_2038_TPlot.pdf
TRINITY_DN16272_c0_g2:2039	si_a556	TRINITY_DN16272_c0_g2	2028	2048	2039	-33.40	-23.30	0.697604790419162	7.5	1-8,2048-2041;10-18,2039-2031	9-9,2040-2040[SIL];19-21,2030-2028[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CCAAUGGGGAGAAGAAGGAAU&AUUUCUUUAUCUCCCCGUGAA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN16272_c0_g2_2039_TPlot.pdf
TRINITY_DN16272_c0_g2:2040	si_a555	TRINITY_DN16272_c0_g2	2029	2049	2040	-33.70	-23.30	0.691394658753709	7.5	2-9,2048-2041;11-19,2039-2031	1-1,2049-2049[UP5];10-10,2040-2040[SIL];20-21,2030-2029[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CAAUGGGGAGAAGAAGGAAUC&UAUUUCUUUAUCUCCCCGUGA	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN16272_c0_g2_2040_TPlot.pdf
TRINITY_DN16272_c0_g2:2041	si_a554	TRINITY_DN16272_c0_g2	2030	2050	2041	-34.40	-23.30	0.677325581395349	8.5	3-10,2048-2041;12-20,2039-2031	1-2,2050-2049[UP5];11-11,2040-2040[SIL];21-21,2030-2030[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	AAUGGGGAGAAGAAGGAAUCU&CUAUUUCUUUAUCUCCCCGUG	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN16272_c0_g2_2041_TPlot.pdf
TRINITY_DN16272_c0_g2:2042	si_a553	TRINITY_DN16272_c0_g2	2031	2055	2042	-33.70	-23.10	0.685459940652819	13.5	1-3,2055-2053;4-11,2048-2041;13-21,2039-2031	x-x,2052-2049[BULt];12-12,2040-2040[SIL]	(((((((((.((((((((....(((&)))----)))))))).)))))))))	AUGGGGAGAAGAAGGAAUCUUUGGA&UCU----AUUUCUUUAUCUCCCCGU	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN16272_c0_g2_2042_TPlot.pdf
TRINITY_DN16272_c0_g2:2043	si_a552	TRINITY_DN16272_c0_g2	2032	2056	2043	-33.10	-21.60	0.652567975830816	14	2-4,2055-2053;5-12,2048-2041;14-20,2039-2033	1-1,2056-2056[UP5];x-x,2052-2049[BULt];13-13,2040-2040[SIL];21-21,2032-2032[UP3]	.(((((((.((((((((....(((.&.)))----)))))))).))))))).	UGGGGAGAAGAAGGAAUCUUUGGAA&AUCU----AUUUCUUUAUCUCCCCG	2	0.997190032184006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN16272_c0_g2_2043_TPlot.pdf
TRINITY_DN16272_c0_g2:2044	si_a551	TRINITY_DN16272_c0_g2	2033	2057	2044	-31.60	-20.90	0.661392405063291	14.5	3-5,2055-2053;6-13,2048-2041;15-21,2039-2033	1-2,2057-2056[UP5];x-x,2052-2049[BULt];14-14,2040-2040[SIL]	(((((((.((((((((....(((..&..)))----)))))))).)))))))	GGGGAGAAGAAGGAAUCUUUGGAAU&AAUCU----AUUUCUUUAUCUCCCC	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN16272_c0_g2_2044_TPlot.pdf
TRINITY_DN16272_c0_g2:2046	si_s83	TRINITY_DN16272_c0_g2	2035	2060	2046	-30.90	-20.70	0.669902912621359	14	1-3,2060-2058;5-8,2056-2053;9-21,2047-2035	4-4,2057-2057[SIL];x-x,2052-2048[BULt]	(((((((((((((.....((((.(((&))).))))-----)))))))))))))	GGAGAAGAAGGAAUCUUUGGAAUGAG&UUCUUUCC-----UUUCUUCUUCUUC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN16272_c0_g2_2046_TPlot.pdf
TRINITY_DN16272_c0_g2:602	si_a762	TRINITY_DN16272_c0_g2	590	611	602	-29.70	-19.50	0.656565656565657	6	1-15,611-597;17-20,594-591	16-16,596-595[AILt];21-21,590-590[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	CAGUCCCGUCAAAAAUCCAAGG&CUUUGGGUUUUUGAU-UGAUUC	3	0.999999997478712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN16272_c0_g2_602_TPlot.pdf
TRINITY_DN16272_c0_g2:603	si_a761	TRINITY_DN16272_c0_g2	591	612	603	-30.10	-19.80	0.6578073089701	6	2-16,611-597;18-21,594-591	1-1,612-612[UP5];17-17,596-595[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	AGUCCCGUCAAAAAUCCAAGGU&CCUUUGGGUUUUUGAU-UGAUU	3	0.999999999854796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN16272_c0_g2_603_TPlot.pdf
TRINITY_DN16272_c0_g2:635	si_a153	TRINITY_DN16272_c0_g2	624	644	635	-28.70	-19.60	0.682926829268293	8.5	2-6,643-639;9-19,636-626	1-1,644-644[UP5];7-8,638-637[SIL];20-21,625-624[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	CCAGAUUGGCCUUCUAACGAG&GUUGUUUUAAGGUCAAUCUAU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN16272_c0_g2_635_TPlot.pdf
TRINITY_DN16272_c0_g2:636	si_a152	TRINITY_DN16272_c0_g2	625	645	636	-29.20	-19.60	0.671232876712329	9.5	3-7,643-639;10-20,636-626	1-2,645-644[UP5];8-9,638-637[SIL];21-21,625-625[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	CAGAUUGGCCUUCUAACGAGC&UGUUGUUUUAAGGUCAAUCUA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN16272_c0_g2_636_TPlot.pdf
TRINITY_DN16272_c0_g2:637	si_a151	TRINITY_DN16272_c0_g2	626	646	637	-28.90	-19.40	0.671280276816609	10.5	4-8,643-639;11-21,636-626	1-3,646-644[UP5];9-10,638-637[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	AGAUUGGCCUUCUAACGAGCU&UUGUUGUUUUAAGGUCAAUCU	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN16272_c0_g2_637_TPlot.pdf
TRINITY_DN16272_c0_g2:80	si_s799	TRINITY_DN16272_c0_g2	66	89	80	-30.00	-19.74	0.658	11	1-9,89-81;11-12,79-78;14-21,73-66	10-10,80-80[SIL];13-13,77-74[AILt]	((((((((....((.(((((((((&))))))))).))---.))))))))	GGUGGCGACGUUGAGAAAAUGCGA&UCGUAUUUUAUC---UUCGUUACC	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN16272_c0_g2_80_TPlot.pdf
TRINITY_DN16275_c0_g1:84	si_s828	TRINITY_DN16275_c0_g1	74	93	84	-21.90	-14.70	0.671232876712329	5	1-11,93-83;13-20,82-75	12-12,x-x[BULq];21-21,74-74[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	AUUCGAGUU-UUUUUCAUUGU&AUAAUGAAAAACAAUUUGAAA	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN16275_c0_g1_84_TPlot.pdf
TRINITY_DN16277_c0_g1:1268	si_a350	TRINITY_DN16277_c0_g1	1257	1277	1268	-20.30	-13.30	0.655172413793103	15	8-20,1270-1258	1-7,1277-1271[UP5];21-21,1257-1257[UP3]	.(((((((((((((.......&.......))))))))))))).	CCAAAGUGGAAUUAUCUGGUC&AAAAUAUUAAUUCUAUUUUGA	4	0.999998711497521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN16277_c0_g1_1268_TPlot.pdf
TRINITY_DN16277_c0_g1:1503	si_a549	TRINITY_DN16277_c0_g1	1492	1514	1503	-29.50	-19.18	0.650169491525424	11.5	1-5,1514-1510;8-21,1505-1492	6-7,1509-1506[AILt]	((((((((((((((....(((((&)))))--..))))))))))))))	GGAGAUGAGGGGAUUUCCAUUGG&UCAAU--CUAUUUCUUUAUCUCC	4	0.999950241653235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN16277_c0_g1_1503_TPlot.pdf
TRINITY_DN16277_c0_g1:975	si_s661	TRINITY_DN16277_c0_g1	964	984	975	-35.40	-23.30	0.65819209039548	7	2-12,983-973;14-16,971-969;18-21,967-964	1-1,984-984[UP5];13-13,972-972[SIL];17-17,968-968[SIL]	((((.(((.(((((((((((.&.))))))))))).))).))))	UGGUGGGUACGGUCCUCCGAG&AUCGGGGGAUCGAAUUGAUUA	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN16277_c0_g1_975_TPlot.pdf
TRINITY_DN16277_c0_g2:450	si_a413	TRINITY_DN16277_c0_g2	439	459	450	-18.40	-13.20	0.717391304347826	5	1-6,459-454;8-20,452-440	7-7,453-453[SIL];21-21,439-439[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UUAUUUAUUUAAAUUUGAAUA&UGUUUAUAUUUAAAUAAAUAU	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN16277_c0_g2_450_TPlot.pdf
TRINITY_DN16277_c0_g2:451	si_a412	TRINITY_DN16277_c0_g2	440	460	451	-18.30	-13.50	0.737704918032787	4.5	1-7,460-454;9-21,452-440	8-8,453-453[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	UAUUUAUUUAAAUUUGAAUAG&UUGUUUAUAUUUAAAUAAAUA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN16277_c0_g2_451_TPlot.pdf
TRINITY_DN16277_c0_g2:452	si_a411	TRINITY_DN16277_c0_g2	441	461	452	-17.90	-12.40	0.692737430167598	6	2-8,460-454;10-21,452-441	1-1,461-461[UP5];9-9,453-453[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	AUUUAUUUAAAUUUGAAUAGG&UUUGUUUAUAUUUAAAUAAAU	2	0.999677759419181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN16277_c0_g2_452_TPlot.pdf
TRINITY_DN1627_c2_g1:443	si_s109	TRINITY_DN1627_c2_g1	426	452	443	-26.50	-17.30	0.652830188679245	13	1-10,452-443;11-21,436-426	x-x,442-437[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	UAUUUUUUUAUUAACUUUUUCCAAUCU&GGAUUGGAAA------AUAGAAAAAUA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN1627_c2_g1_443_TPlot.pdf
TRINITY_DN16283_c0_g3:1510	si_s888	TRINITY_DN16283_c0_g3	1499	1518	1510	-26.80	-18.40	0.686567164179104	11	3-7,1516-1512;11-21,1509-1499	1-2,1518-1517[UP5];8-10,1511-1510[AILq]	(((((((((((..-(((((..&..)))))...)))))))))))	AGGAGGAAGCCGC-UUGUUGC&AAAAUAAAUAGGCUUUCUCUU	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN16283_c0_g3_1510_TPlot.pdf
TRINITY_DN16283_c0_g3:1703	si_a333	TRINITY_DN16283_c0_g3	1692	1712	1703	-30.60	-21.90	0.715686274509804	15	6-17,1707-1696	1-5,1712-1708[UP5];18-21,1695-1692[UP3]	....((((((((((((.....&.....))))))))))))....	CGGCCGGGACGGGGAAGACGU&UUUUAUUCCUUGUCCCGAAAA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN16283_c0_g3_1703_TPlot.pdf
TRINITY_DN16283_c0_g3:1705	si_a331	TRINITY_DN16283_c0_g3	1694	1714	1705	-30.60	-21.90	0.715686274509804	16.5	8-19,1707-1696	1-7,1714-1708[UP5];20-21,1695-1694[UP3]	..((((((((((((.......&.......))))))))))))..	GCCGGGACGGGGAAGACGUCA&UUUUUUAUUCCUUGUCCCGAA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN16283_c0_g3_1705_TPlot.pdf
TRINITY_DN16283_c0_g3:1803	si_a629	TRINITY_DN16283_c0_g3	1792	1812	1803	-26.30	-17.60	0.669201520912548	7	1-2,1812-1811;4-10,1809-1803;12-21,1801-1792	3-3,1810-1810[SIL];11-11,1802-1802[SIL]	((((((((((.(((((((.((&)).))))))).))))))))))	CAGAGGGAUCAACAUGAUCCG&CGUAUUAUGUCGAUUUUUUUG	4	0.999961159251471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN16283_c0_g3_1803_TPlot.pdf
TRINITY_DN16283_c0_g3:2174	si_s693	TRINITY_DN16283_c0_g3	2163	2184	2174	-23.90	-15.60	0.652719665271967	9.5	1-4,2184-2181;6-18,2178-2166	5-5,2180-2179[AILt];19-21,2165-2163[UP3]	...(((((((((((((..((((&))))-.)))))))))))))...	GCCUGGAUCGACUAAUCGAGAU&GUUU-AAUUAGUCGAUUUAUUA	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN16283_c0_g3_2174_TPlot.pdf
TRINITY_DN16283_c0_g3:2175	si_s692	TRINITY_DN16283_c0_g3	2164	2185	2175	-24.20	-15.80	0.652892561983471	10	2-5,2184-2181;7-19,2178-2166	1-1,2185-2185[UP5];6-6,2180-2179[AILt];20-21,2165-2164[UP3]	..(((((((((((((..((((.&.))))-.)))))))))))))..	CCUGGAUCGACUAAUCGAGAUC&AGUUU-AAUUAGUCGAUUUAUU	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN16283_c0_g3_2175_TPlot.pdf
TRINITY_DN16283_c0_g3:2176	si_s691	TRINITY_DN16283_c0_g3	2165	2187	2176	-26.20	-18.50	0.706106870229008	9	1-3,2187-2185;4-6,2183-2181;8-20,2178-2166	x-x,2184-2184[BULt];7-7,2180-2179[AILt];21-21,2165-2165[UP3]	.(((((((((((((..(((.(((&)))-)))-.))))))))))))).	CUGGAUCGACUAAUCGAGAUCUC&GAG-UUU-AAUUAGUCGAUUUAU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN16283_c0_g3_2176_TPlot.pdf
TRINITY_DN16283_c0_g3:2177	si_s690	TRINITY_DN16283_c0_g3	2166	2188	2177	-26.70	-19.40	0.726591760299625	8	1-4,2188-2185;5-7,2183-2181;9-21,2178-2166	x-x,2184-2184[BULt];8-8,2180-2179[AILt]	(((((((((((((..(((.((((&))))-)))-.)))))))))))))	UGGAUCGACUAAUCGAGAUCUCA&UGAG-UUU-AAUUAGUCGAUUUA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN16283_c0_g3_2177_TPlot.pdf
TRINITY_DN16283_c0_g3:2853	si_s717	TRINITY_DN16283_c0_g3	2842	2863	2853	-30.10	-21.70	0.720930232558139	8	4-6,2860-2858;7-21,2856-2842	1-3,2863-2861[UP5];x-x,2857-2857[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	UAGGUAAUGUCUUUCUCCUCGC&AACAGG-GAAAGAUAUUAUCUA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN16283_c0_g3_2853_TPlot.pdf
TRINITY_DN16284_c0_g1:1677	si_s74	TRINITY_DN16284_c0_g1	1666	1686	1677	-25.00	-17.30	0.692	10.5	5-20,1682-1667	1-4,1686-1683[UP5];21-21,1666-1666[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAAGGAGAGAAAGAAGUCUC&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN16284_c0_g1_1677_TPlot.pdf
TRINITY_DN16284_c0_g1:1678	si_s73	TRINITY_DN16284_c0_g1	1667	1687	1678	-24.00	-17.30	0.720833333333333	11.5	6-21,1682-1667	1-5,1687-1683[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGGAGAGAAAGAAGUCUCG&UCUAUUUUUUUUCUUUCCUUU	4	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN16284_c0_g1_1678_TPlot.pdf
TRINITY_DN16284_c0_g1:2671	si_a122	TRINITY_DN16284_c0_g1	2659	2680	2671	-29.00	-20.40	0.703448275862069	7	1-11,2680-2670;12-14,2668-2666;17-20,2663-2660	x-x,2669-2669[BULt];15-16,2665-2664[SIL];21-21,2659-2659[UP3]	.((((..(((.(((((((((((&)))))))))))-)))..)))).	AGCUAGGGUUGAUAGAACAAGC&GCUUGUUUUAU-AGCAAUAGUA	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN16284_c0_g1_2671_TPlot.pdf
TRINITY_DN16286_c0_g1:1281	si_a73	TRINITY_DN16286_c0_g1	1270	1290	1281	-21.90	-14.30	0.65296803652968	11.5	5-18,1286-1273	1-4,1290-1287[UP5];19-21,1272-1270[UP3]	...((((((((((((((....&....))))))))))))))...	GAAAGUGAAAAACAGUUGUAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN16286_c0_g1_1281_TPlot.pdf
TRINITY_DN16286_c0_g1:627	si_s191	TRINITY_DN16286_c0_g1	617	636	627	-26.60	-21.20	0.796992481203007	4	3-17,634-620;19-21,619-617	1-2,636-635[UP5];18-18,x-x[BULq]	(((-(((((((((((((((..&..))))))))))))))).)))	UAC-UUCCAAAAUAAUCGUAU&UAACGAUUAUUUUGGAAUGUA	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN16286_c0_g1_627_TPlot.pdf
TRINITY_DN16289_c0_g2:1296	si_s625	TRINITY_DN16289_c0_g2	1276	1305	1296	-37.00	-24.70	0.667567567567568	15	3-11,1303-1295;13-14,1293-1292;15-21,1282-1276	1-2,1305-1304[UP5];12-12,1294-1294[SIL];x-x,1291-1283[BULt]	(((((((.........((.(((((((((..&..))))))))).))---------)))))))	CGCCUACUGCCGAGAGGAUGAGAUCGCUGC&CAAGCGAUCUUUUC---------GUAGGCG	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN16289_c0_g2_1296_TPlot.pdf
TRINITY_DN16289_c0_g2:1627	si_s893	TRINITY_DN16289_c0_g2	1616	1636	1627	-29.10	-19.50	0.670103092783505	11.5	4-6,1633-1631;8-18,1629-1619	1-3,1636-1634[UP5];7-7,1630-1630[SIL];19-21,1618-1616[UP3]	...(((((((((((.(((...&...))).)))))))))))...	CAGUGGAGAGAAAGGCUGCCG&AAAUAGGCUUUCUCUUCAAUU	3	0.999999366446917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN16289_c0_g2_1627_TPlot.pdf
TRINITY_DN16289_c0_g2:1686	si_a72	TRINITY_DN16289_c0_g2	1674	1695	1686	-21.90	-15.30	0.698630136986301	6.5	2-14,1694-1682;15-19,1680-1676	1-1,1695-1695[UP5];x-x,1681-1681[BULt];20-21,1675-1674[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	CGAAUGAUGAAACAAUUUGGGC&UUUCAAAUUGUUUU-UCAUUAU	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN16289_c0_g2_1686_TPlot.pdf
TRINITY_DN16289_c0_g2:759	si_s245	TRINITY_DN16289_c0_g2	747	768	759	-33.20	-24.00	0.72289156626506	8.5	4-15,765-754;16-19,752-749	1-3,768-766[UP5];x-x,753-753[BULt];20-21,748-747[UP3]	..((((.((((((((((((...&...))))))))))))-))))..	GCUGUCAGGGAAAUGCCUAACU&CAAUAGGCAUUUCCC-GAUAUA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN16289_c0_g2_759_TPlot.pdf
TRINITY_DN16289_c0_g2:946	si_a637	TRINITY_DN16289_c0_g2	935	955	946	-25.80	-16.80	0.651162790697674	10	1-16,955-940	17-21,939-935[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGACGGCUUGAAAAGAUUGGC&GUCGAUUUUUUUGAGUAAUAU	3	0.999999999998168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN16289_c0_g2_946_TPlot.pdf
TRINITY_DN16289_c0_g2:948	si_a635	TRINITY_DN16289_c0_g2	937	957	948	-26.10	-17.00	0.651340996168582	10.5	3-18,955-940	1-2,957-956[UP5];19-21,939-937[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACGGCUUGAAAAGAUUGGCUG&AUGUCGAUUUUUUUGAGUAAU	2	0.999999997915038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN16289_c0_g2_948_TPlot.pdf
TRINITY_DN1628_c0_g1:1731	si_s67	TRINITY_DN1628_c0_g1	1720	1740	1731	-25.60	-16.70	0.65234375	10.5	1-16,1740-1725	17-21,1724-1720[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGUCCAGAGAGUGGGGGUUGU&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1628_c0_g1_1731_TPlot.pdf
TRINITY_DN1628_c0_g1:1735	si_s63	TRINITY_DN1628_c0_g1	1724	1744	1735	-25.80	-18.70	0.724806201550388	9	1-2,1744-1743;4-20,1741-1725	3-3,1742-1742[SIL];21-21,1724-1724[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	CAGAGAGUGGGGGUUGUUUGC&GUUAGCAACUUCUAUUUUUUU	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN1628_c0_g1_1735_TPlot.pdf
TRINITY_DN1628_c0_g1:1904	si_a128	TRINITY_DN1628_c0_g1	1893	1913	1904	-23.20	-15.60	0.672413793103448	10.5	5-9,1909-1905;11-20,1903-1894	1-4,1913-1910[UP5];10-10,1904-1904[SIL];21-21,1893-1893[UP3]	.((((((((((.(((((....&....))))).)))))))))).	UUUGAUUACUAGUGCUAAUUU&UUUAUAGCAAUAGUAAUUAAU	2	0.971549756688101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN1628_c0_g1_1904_TPlot.pdf
TRINITY_DN1628_c0_g1:1905	si_a127	TRINITY_DN1628_c0_g1	1894	1914	1905	-23.10	-15.50	0.670995670995671	11.5	6-10,1909-1905;12-21,1903-1894	1-5,1914-1910[UP5];11-11,1904-1904[SIL]	((((((((((.(((((.....&.....))))).))))))))))	UUGAUUACUAGUGCUAAUUUG&UUUUAUAGCAAUAGUAAUUAA	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN1628_c0_g1_1905_TPlot.pdf
TRINITY_DN1628_c0_g1:1942	si_s610	TRINITY_DN1628_c0_g1	1923	1951	1942	-27.20	-18.00	0.661764705882353	12	2-13,1950-1939;14-21,1930-1923	1-1,1951-1951[UP5];x-x,1938-1931[BULt]	((((((((........((((((((((((.&.))))))))))))--------))))))))	UGCUUGGGGAGGGCCUUUUGGAAAAGAUA&AAUCUUUUUUAAA--------UCCAAGCG	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN1628_c0_g1_1942_TPlot.pdf
TRINITY_DN1628_c0_g1:1950	si_s69	TRINITY_DN1628_c0_g1	1939	1959	1950	-23.40	-15.70	0.670940170940171	8.5	1-9,1959-1951;11-18,1949-1942	10-10,1950-1950[SIL];19-21,1941-1939[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUUGGAAAAGAUAUGGGAGUU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1628_c0_g1_1950_TPlot.pdf
TRINITY_DN16298_c0_g1:4203	si_a498	TRINITY_DN16298_c0_g1	4187	4212	4203	-33.50	-21.80	0.650746268656716	11.5	2-16,4211-4197;17-19,4191-4189	1-1,4212-4212[UP5];x-x,4196-4192[BULt];20-21,4188-4187[UP3]	..(((.....(((((((((((((((.&.)))))))))))))))-----)))..	UCAGGUUGACGAGACGGAGAAUGACG&UGUCGUUUUUCGUCUU-----CCUUG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN16298_c0_g1_4203_TPlot.pdf
TRINITY_DN16298_c0_g1:4206	si_a495	TRINITY_DN16298_c0_g1	4195	4215	4206	-31.90	-20.90	0.655172413793103	12	5-19,4211-4197	1-4,4215-4212[UP5];20-21,4196-4195[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGAGACGGAGAAUGACGAGC&AUAUGUCGUUUUUCGUCUUCC	2	0.999999808917965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN16298_c0_g1_4206_TPlot.pdf
TRINITY_DN16298_c0_g1:4241	si_a20	TRINITY_DN16298_c0_g1	4230	4250	4241	-26.70	-18.20	0.681647940074906	7.5	2-14,4249-4237;17-20,4234-4231	1-1,4250-4250[UP5];15-16,4236-4235[SIL];21-21,4230-4230[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	GAGAAGAGAAAGUGGAUAGGA&GCCUAUUUAUUUUUAGUUCUA	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN16298_c0_g1_4241_TPlot.pdf
TRINITY_DN16298_c0_g1:4248	si_s76	TRINITY_DN16298_c0_g1	4235	4257	4248	-23.60	-16.50	0.699152542372881	7	1-11,4257-4247;12-14,4245-4243;15-21,4241-4235	x-x,4246-4246[BULt];x-x,4242-4242[BULt]	(((((((.(((.(((((((((((&)))))))))))-)))-)))))))	GAGAAAGUGGAUAGGAGAAAAGU&AUUUUUUUUCU-UUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN16298_c0_g1_4248_TPlot.pdf
TRINITY_DN16298_c0_g1:941	si_s79	TRINITY_DN16298_c0_g1	929	950	941	-26.20	-20.50	0.782442748091603	7.5	1-11,950-940;12-19,938-931	x-x,939-939[BULt];20-21,930-929[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	GUGGAGAAAGUGAAAGGGAAGA&UUUUUUCUUUC-CUUUCUUCUU	2	0.999919054515961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN16298_c0_g1_941_TPlot.pdf
TRINITY_DN162_c0_g1:1352	si_a75	TRINITY_DN162_c0_g1	1341	1361	1352	-21.30	-14.70	0.690140845070423	7.5	1-6,1361-1356;8-16,1354-1346;18-20,1344-1342	7-7,1355-1355[SIL];17-17,1345-1345[SIL];21-21,1341-1341[UP3]	.(((.(((((((((.((((((&)))))).))))))))).))).	AUGAAAAUGGAAGAGGAUUUG&CAAAUUGUUUUUCAUUAUUAA	2	0.999953187730242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN162_c0_g1_1352_TPlot.pdf
TRINITY_DN162_c0_g1:1353	si_a74	TRINITY_DN162_c0_g1	1342	1362	1353	-22.20	-14.70	0.662162162162162	6.5	1-7,1362-1356;9-17,1354-1346;19-21,1344-1342	8-8,1355-1355[SIL];18-18,1345-1345[SIL]	(((.(((((((((.(((((((&))))))).))))))))).)))	UGAAAAUGGAAGAGGAUUUGG&UCAAAUUGUUUUUCAUUAUUA	3	0.999999999873981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN162_c0_g1_1353_TPlot.pdf
TRINITY_DN162_c0_g1:1354	si_a73	TRINITY_DN162_c0_g1	1343	1363	1354	-21.90	-14.70	0.671232876712329	9.5	2-8,1362-1356;10-18,1354-1346	1-1,1363-1363[UP5];9-9,1355-1355[SIL];19-21,1345-1343[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GAAAAUGGAAGAGGAUUUGGU&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999906984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN162_c0_g1_1354_TPlot.pdf
TRINITY_DN162_c0_g1:1355	si_a72	TRINITY_DN162_c0_g1	1344	1364	1355	-21.90	-14.70	0.671232876712329	10.5	3-9,1362-1356;11-19,1354-1346	1-2,1364-1363[UP5];10-10,1355-1355[SIL];20-21,1345-1344[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AAAAUGGAAGAGGAUUUGGUA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999987207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN162_c0_g1_1355_TPlot.pdf
TRINITY_DN162_c0_g1:1356	si_a71	TRINITY_DN162_c0_g1	1345	1365	1356	-23.30	-16.50	0.708154506437768	8	1-2,1365-1364;4-10,1362-1356;12-20,1354-1346	3-3,1363-1363[SIL];11-11,1355-1355[SIL];21-21,1345-1345[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	AAAUGGAAGAGGAUUUGGUAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999970930827431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN162_c0_g1_1356_TPlot.pdf
TRINITY_DN162_c0_g1:1357	si_a70	TRINITY_DN162_c0_g1	1346	1366	1357	-23.90	-16.40	0.686192468619247	7.5	1-3,1366-1364;5-11,1362-1356;13-21,1354-1346	4-4,1363-1363[SIL];12-12,1355-1355[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	AAUGGAAGAGGAUUUGGUAGG&UCUUUCAAAUUGUUUUUCAUU	2	0.999919054515961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN162_c0_g1_1357_TPlot.pdf
TRINITY_DN162_c0_g1:161	si_s8	TRINITY_DN162_c0_g1	151	171	161	-21.30	-13.90	0.652582159624413	6	1-7,171-165;8-10,163-161;12-21,160-151	x-x,164-164[BULt];11-11,x-x[BULq]	((((((((((-(((.(((((((&)))))))-))).))))))))))	AAUGUAGUGA-AAUCAAGUGAU&AUUACUU-AUUAUUACUAUAUU	3	0.999999982395045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN162_c0_g1_161_TPlot.pdf
TRINITY_DN162_c0_g1:162	si_s7	TRINITY_DN162_c0_g1	152	172	162	-21.70	-14.30	0.658986175115207	6	1-8,172-165;9-11,163-161;13-21,160-152	x-x,164-164[BULt];12-12,x-x[BULq]	(((((((((-(((.((((((((&))))))))-))).)))))))))	AUGUAGUGA-AAUCAAGUGAUA&UAUUACUU-AUUAUUACUAUAU	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN162_c0_g1_162_TPlot.pdf
TRINITY_DN162_c0_g1:1768	si_a642	TRINITY_DN162_c0_g1	1757	1777	1768	-25.90	-17.48	0.674903474903475	11.5	4-10,1774-1768;14-21,1764-1757	1-3,1777-1775[UP5];11-13,1767-1765[SIL]	((((((((...(((((((...&...)))))))...))))))))	CCGAUGUAGUUCUCGAAACUU&UUUUUUUGAGUAAUAUAUCGG	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN162_c0_g1_1768_TPlot.pdf
TRINITY_DN162_c0_g1:333	si_a79	TRINITY_DN162_c0_g1	322	342	333	-22.20	-14.80	0.666666666666667	10	1-15,342-328	16-21,327-322[UP3]	......(((((((((((((((&)))))))))))))))......	GUCAAGAAUGAUGGAGAACGA&UUGUUUUUCAUUAUUAAGAAA	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN162_c0_g1_333_TPlot.pdf
TRINITY_DN162_c0_g1:336	si_a76	TRINITY_DN162_c0_g1	325	345	336	-21.20	-14.80	0.69811320754717	11.5	4-18,342-328	1-3,345-343[UP5];19-21,327-325[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAGAAUGAUGGAGAACGAAAC&AAAUUGUUUUUCAUUAUUAAG	3	0.999993094182893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN162_c0_g1_336_TPlot.pdf
TRINITY_DN162_c0_g1:539	si_a20	TRINITY_DN162_c0_g1	528	548	539	-26.70	-17.80	0.666666666666667	7.5	1-11,548-538;14-17,535-532;19-20,530-529	12-13,537-536[SIL];18-18,531-531[SIL];21-21,528-528[UP3]	.((.((((..(((((((((((&)))))))))))..)))).)).	AGGCGCUAUUAAUAAAUGGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999999482553996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN162_c0_g1_539_TPlot.pdf
TRINITY_DN162_c0_g1:542	si_a17	TRINITY_DN162_c0_g1	531	551	542	-24.30	-16.70	0.687242798353909	10.5	4-14,548-538;17-20,535-532	1-3,551-549[UP5];15-16,537-536[SIL];21-21,531-531[UP3]	.((((..(((((((((((...&...)))))))))))..)))).	CGCUAUUAAUAAAUGGGUAUC&AAAGCCUAUUUAUUUUUAGUU	4	0.999980346173202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN162_c0_g1_542_TPlot.pdf
TRINITY_DN16300_c0_g1:105	si_s632	TRINITY_DN16300_c0_g1	92	114	105	-38.20	-25.90	0.678010471204188	10.5	3-14,112-101;15-21,98-92	1-2,114-113[UP5];x-x,100-99[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	GGGCGGGACCGCUUGCGAGAGAU&UCUUUUCGUAGGCG--UUUGCCC	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN16300_c0_g1_105_TPlot.pdf
TRINITY_DN16305_c0_g1:1142	si_a461	TRINITY_DN16305_c0_g1	1131	1151	1142	-21.50	-14.20	0.66046511627907	6.5	3-7,1149-1145;9-21,1143-1131	1-2,1151-1150[UP5];8-8,1144-1144[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AAUUACGUAUUAUUUGUAAAA&UGUUAUAUAUAAUAUGUAAUU	2	0.994143829972238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN16305_c0_g1_1142_TPlot.pdf
TRINITY_DN16308_c1_g5:285	si_s312	TRINITY_DN16308_c1_g5	274	294	285	-29.00	-22.20	0.76551724137931	11.5	6-21,289-274	1-5,294-290[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAACGAGAAGGAUGGACCACU&AAAAUUCUGUCCUUCUUGUUA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN16308_c1_g5_285_TPlot.pdf
TRINITY_DN16314_c0_g1:1854	si_s68	TRINITY_DN16314_c0_g1	1843	1863	1854	-23.10	-16.10	0.696969696969697	10	3-11,1861-1853;14-20,1850-1844	1-2,1863-1862[UP5];12-13,1852-1851[SIL];21-21,1843-1843[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	UGAGAAGAUUGAUGGAAGUCU&CAACUUCUAUUUUUUUUCUUU	2	0.999999951399857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN16314_c0_g1_1854_TPlot.pdf
TRINITY_DN16314_c0_g1:2065	si_s84	TRINITY_DN16314_c0_g1	2053	2077	2065	-32.30	-21.60	0.668730650154799	10.5	2-9,2076-2069;10-18,2065-2057;19-21,2055-2053	1-1,2077-2077[UP5];x-x,2068-2066[BULt];x-x,2056-2056[BULt]	(((.(((((((((...((((((((.&.))))))))---)))))))))-)))	CGGCAGAGGGAGACAUGAGGAAAGC&UCUUUCCUU---UCUUCUUCU-UCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN16314_c0_g1_2065_TPlot.pdf
TRINITY_DN16314_c0_g1:2070	si_a219	TRINITY_DN16314_c0_g1	2059	2079	2070	-25.10	-16.50	0.657370517928287	18	9-19,2071-2061	1-8,2079-2072[UP5];20-21,2060-2059[UP3]	..(((((((((((........&........)))))))))))..	AGGGAGACAUGAGGAAAGCGA&UAAUUAAACUCAUGUUUCUAU	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN16314_c0_g1_2070_TPlot.pdf
TRINITY_DN16314_c0_g1:2071	si_a218	TRINITY_DN16314_c0_g1	2060	2083	2071	-26.60	-18.50	0.695488721804511	16	1-6,2083-2078;10-20,2071-2061	7-9,2077-2072[AILt];21-21,2060-2060[UP3]	.(((((((((((......((((((&))))))---...))))))))))).	GGGAGACAUGAGGAAAGCGAUUGG&CUAAUU---AAACUCAUGUUUCUA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN16314_c0_g1_2071_TPlot.pdf
TRINITY_DN16314_c0_g1:2078	si_a545	TRINITY_DN16314_c0_g1	2067	2087	2078	-28.10	-18.50	0.658362989323843	8	1-2,2087-2086;4-10,2084-2078;13-21,2075-2067	3-3,2085-2085[SIL];11-12,2077-2076[SIL]	(((((((((..(((((((.((&)).)))))))..)))))))))	AUGAGGAAAGCGAUUGGAGCG&CGGUUCAAUCUAUUUCUUUAU	4	0.999982273507496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN16314_c0_g1_2078_TPlot.pdf
TRINITY_DN16314_c0_g1:2106	si_s635	TRINITY_DN16314_c0_g1	2091	2115	2106	-39.80	-26.20	0.658291457286432	11.5	1-10,2115-2106;11-17,2102-2096;18-19,2094-2093	x-x,2105-2103[BULt];x-x,2095-2095[BULt];20-21,2092-2091[UP3]	..((.(((((((...((((((((((&))))))))))---)))))))-))..	CAAGCGGCAGGCGCAGCCUACGAGA&UUUCGUAGGC---GUUUGCC-CUCG	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN16314_c0_g1_2106_TPlot.pdf
TRINITY_DN16314_c0_g1:2108	si_s633	TRINITY_DN16314_c0_g1	2093	2117	2108	-37.90	-27.30	0.720316622691293	10	2-12,2116-2106;13-19,2102-2096;20-21,2094-2093	1-1,2117-2117[UP5];x-x,2105-2103[BULt];x-x,2095-2095[BULt]	((.(((((((...(((((((((((.&.)))))))))))---)))))))-))	AGCGGCAGGCGCAGCCUACGAGAAA&CUUUUCGUAGGC---GUUUGCC-CU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN16314_c0_g1_2108_TPlot.pdf
TRINITY_DN16314_c0_g1:2202	si_a502	TRINITY_DN16314_c0_g1	2191	2213	2202	-32.10	-21.10	0.657320872274143	12.5	1-7,2213-2207;8-16,2204-2196;18-18,2194-2194	x-x,2206-2205[BULt];17-17,2195-2195[SIL];19-21,2193-2191[UP3]	...(.(((((((((..(((((((&)))))))--))))))))).)...	GCACGGAGGGAGACUGGAGGAGC&GUUUUUC--GUCUUCCUUGGAAU	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN16314_c0_g1_2202_TPlot.pdf
TRINITY_DN16315_c0_g1:39	si_a71	TRINITY_DN16315_c0_g1	25	48	39	-23.30	-15.30	0.656652360515022	11.5	2-12,47-37;13-20,33-26	1-1,48-48[UP5];x-x,36-34[BULt];21-21,25-25[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	CAAUGAAGAGUCACAGUUUGAGGU&CUUUCAAAUUGU---UUUUCAUUA	4	0.999999999999746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN16315_c0_g1_39_TPlot.pdf
TRINITY_DN1631_c0_g1:1184	si_s87	TRINITY_DN1631_c0_g1	1173	1194	1184	-32.90	-21.40	0.650455927051672	8	2-5,1193-1190;6-10,1188-1184;12-19,1182-1175	1-1,1194-1194[UP5];x-x,1189-1189[BULt];11-11,1183-1183[SIL];20-21,1174-1173[UP3]	..((((((((.(((((.((((.&.))))-))))).))))))))..	ACGCGAAGAAAAAGAGAAGGAC&UUCCU-UUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1631_c0_g1_1184_TPlot.pdf
TRINITY_DN1631_c0_g1:1196	si_s308	TRINITY_DN1631_c0_g1	1186	1205	1196	-32.80	-21.70	0.661585365853659	8.5	2-5,1204-1201;8-10,1198-1196;12-21,1195-1186	1-1,1205-1205[UP5];6-7,1200-1199[SIL];11-11,x-x[BULq]	((((((((((-(((..((((.&.))))..))).))))))))))	GAGAAGGACA-AGUCGUCGCG&UGCGAAAAUUCUGUCCUUCUU	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN1631_c0_g1_1196_TPlot.pdf
TRINITY_DN1631_c0_g1:1263	si_s81	TRINITY_DN1631_c0_g1	1250	1272	1263	-28.90	-20.90	0.72318339100346	5.5	1-13,1272-1260;15-21,1256-1250	14-14,1259-1257[AILt]	(((((((...(((((((((((((&)))))))))))))--.)))))))	AGAAGGACAAAGAGGAGAGAAAA&UUUUCUUUCCUUU--CUUCUUCU	3	0.999999999999968	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1631_c0_g1_1263_TPlot.pdf
TRINITY_DN1631_c0_g1:1264	si_s80	TRINITY_DN1631_c0_g1	1251	1273	1264	-28.20	-20.50	0.726950354609929	5	1-14,1273-1260;16-21,1256-1251	15-15,1259-1257[AILt]	((((((...((((((((((((((&))))))))))))))--.))))))	GAAGGACAAAGAGGAGAGAAAAA&UUUUUCUUUCCUUU--CUUCUUC	4	0.999999999999962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1631_c0_g1_1264_TPlot.pdf
TRINITY_DN1631_c0_g1:1328	si_a193	TRINITY_DN1631_c0_g1	1317	1337	1328	-30.90	-21.20	0.686084142394822	11	1-12,1337-1326	13-21,1325-1317[UP3]	.........((((((((((((&)))))))))))).........	ACACGAAAAGAGCAGGGAGAG&CUUUCCCUGUUCACUAAUAAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN1631_c0_g1_1328_TPlot.pdf
TRINITY_DN1631_c0_g1:1331	si_a190	TRINITY_DN1631_c0_g1	1320	1340	1331	-32.00	-22.80	0.7125	10.5	3-15,1338-1326	1-2,1340-1339[UP5];16-21,1325-1320[UP3]	......(((((((((((((..&..)))))))))))))......	CGAAAAGAGCAGGGAGAGAGA&UAUCUUUCCCUGUUCACUAAU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN1631_c0_g1_1331_TPlot.pdf
TRINITY_DN1631_c0_g1:1334	si_a187	TRINITY_DN1631_c0_g1	1323	1343	1334	-32.00	-22.80	0.7125	13.5	6-18,1338-1326	1-5,1343-1339[UP5];19-21,1325-1323[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAGAGCAGGGAGAGAGACAG&UAAUAUCUUUCCCUGUUCACU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN1631_c0_g1_1334_TPlot.pdf
TRINITY_DN1631_c0_g1:1335	si_a186	TRINITY_DN1631_c0_g1	1324	1344	1335	-31.50	-22.80	0.723809523809524	14.5	7-19,1338-1326	1-6,1344-1339[UP5];20-21,1325-1324[UP3]	..(((((((((((((......&......)))))))))))))..	AAGAGCAGGGAGAGAGACAGA&AUAAUAUCUUUCCCUGUUCAC	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN1631_c0_g1_1335_TPlot.pdf
TRINITY_DN1631_c0_g1:1336	si_a185	TRINITY_DN1631_c0_g1	1325	1348	1336	-31.70	-23.68	0.747003154574132	16.5	1-3,1348-1346;8-20,1338-1326	4-7,1345-1339[AILt];21-21,1325-1325[UP3]	.(((((((((((((.......(((&)))---....))))))))))))).	AGAGCAGGGAGAGAGACAGAGAUC&GAU---AAUAUCUUUCCCUGUUCA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN1631_c0_g1_1336_TPlot.pdf
TRINITY_DN1631_c0_g1:1344	si_a498	TRINITY_DN1631_c0_g1	1329	1354	1344	-33.50	-21.80	0.650746268656716	11.5	1-6,1354-1349;8-11,1346-1343;12-15,1341-1338;16-21,1334-1329	7-7,1348-1347[AILt];x-x,1342-1342[BULt];x-x,1337-1335[BULt]	((((((...((((.((((..((((((&))))))-.))))-))))---))))))	CAGGGAGAGAGACAGAGAUCGCGACA&UGUCGU-UUUUC-GUCU---UCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1631_c0_g1_1344_TPlot.pdf
TRINITY_DN1631_c0_g1:1418	si_s79	TRINITY_DN1631_c0_g1	1402	1427	1418	-26.20	-17.10	0.652671755725191	16.5	3-11,1425-1417;12-21,1411-1402	1-2,1427-1426[UP5];x-x,1416-1412[BULt]	((((((((((.....(((((((((..&..)))))))))-----))))))))))	AAGGAGAAAGAACGCGAGAGGGAACG&UUUUUUCUUUC-----CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1631_c0_g1_1418_TPlot.pdf
TRINITY_DN1631_c0_g1:1475	si_s628	TRINITY_DN1631_c0_g1	1462	1485	1475	-35.40	-23.78	0.671751412429379	9	1-9,1485-1477;10-13,1475-1472;16-21,1467-1462	x-x,1476-1476[BULt];14-15,1471-1468[AILt]	((((((....((((.(((((((((&)))))))))-))))--..))))))	GAACGCGAUCGCGAUAGGGAUCGC&GCGAUCUUU-UCGU--AGGCGUUU	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN1631_c0_g1_1475_TPlot.pdf
TRINITY_DN1631_c0_g1:1566	si_s82	TRINITY_DN1631_c0_g1	1555	1576	1566	-28.90	-19.60	0.678200692041523	9.5	2-5,1575-1572;7-8,1570-1569;9-19,1567-1557	1-1,1576-1576[UP5];6-6,1571-1571[SIL];x-x,1568-1568[BULt];20-21,1556-1555[UP3]	..(((((((((((.((.((((.&.)))).))-)))))))))))..	UUGAAGGAGAAAGAGAUGGAGG&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1631_c0_g1_1566_TPlot.pdf
TRINITY_DN1631_c0_g1:1567	si_s81	TRINITY_DN1631_c0_g1	1556	1577	1567	-28.90	-21.00	0.726643598615917	8.5	1-6,1577-1572;8-9,1570-1569;10-20,1567-1557	7-7,1571-1571[SIL];x-x,1568-1568[BULt];21-21,1556-1556[UP3]	.(((((((((((.((.((((((&)))))).))-))))))))))).	UGAAGGAGAAAGAGAUGGAGGA&UUUUCUUUC-CUUUCUUCUUCU	4	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1631_c0_g1_1567_TPlot.pdf
TRINITY_DN1631_c0_g1:1570	si_s68	TRINITY_DN1631_c0_g1	1558	1579	1570	-23.10	-15.30	0.662337662337662	10.5	4-15,1576-1565;16-21,1563-1558	1-3,1579-1577[UP5];x-x,1564-1564[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	AAGGAGAAAGAGAUGGAGGACG&CAACUUCUAUUUUUU-UUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1631_c0_g1_1570_TPlot.pdf
TRINITY_DN1631_c0_g1:1602	si_a758	TRINITY_DN1631_c0_g1	1591	1611	1602	-34.00	-23.20	0.682352941176471	8.5	1-8,1611-1604;10-16,1602-1596	9-9,1603-1603[SIL];17-21,1595-1591[UP3]	.....(((((((.((((((((&)))))))).))))))).....	AAGAAGAAAGCCGAAAGGAGG&CCUCCUUUGGGUUUUUGAUUG	2	0.995490768745023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1631_c0_g1_1602_TPlot.pdf
TRINITY_DN1631_c0_g1:1603	si_a757	TRINITY_DN1631_c0_g1	1592	1612	1603	-33.10	-23.40	0.706948640483384	8	2-9,1611-1604;11-17,1602-1596	1-1,1612-1612[UP5];10-10,1603-1603[SIL];18-21,1595-1592[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AGAAGAAAGCCGAAAGGAGGG&ACCUCCUUUGGGUUUUUGAUU	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN1631_c0_g1_1603_TPlot.pdf
TRINITY_DN1631_c0_g1:1605	si_a755	TRINITY_DN1631_c0_g1	1594	1614	1605	-34.90	-23.40	0.670487106017192	10	4-11,1611-1604;13-19,1602-1596	1-3,1614-1612[UP5];12-12,1603-1603[SIL];20-21,1595-1594[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	AAGAAAGCCGAAAGGAGGGCA&GAACCUCCUUUGGGUUUUUGA	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN1631_c0_g1_1605_TPlot.pdf
TRINITY_DN1631_c0_g1:1606	si_a754	TRINITY_DN1631_c0_g1	1595	1615	1606	-34.60	-23.40	0.676300578034682	10	5-12,1611-1604;14-20,1602-1596	1-4,1615-1612[UP5];13-13,1603-1603[SIL];21-21,1595-1595[UP3]	.(((((((.((((((((....&....)))))))).))))))).	AGAAAGCCGAAAGGAGGGCAA&UGAACCUCCUUUGGGUUUUUG	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN1631_c0_g1_1606_TPlot.pdf
TRINITY_DN1631_c0_g1:1612	si_s76	TRINITY_DN1631_c0_g1	1601	1622	1612	-23.60	-17.90	0.758474576271186	9	2-9,1621-1614;10-19,1612-1603	1-1,1622-1622[UP5];x-x,1613-1613[BULt];20-21,1602-1601[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	CCGAAAGGAGGGCAAGAGAAAA&AUUUUUUUU-CUUUCCUUUCUU	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1631_c0_g1_1612_TPlot.pdf
TRINITY_DN1631_c0_g1:1618	si_s71	TRINITY_DN1631_c0_g1	1606	1627	1618	-25.70	-18.00	0.700389105058366	8	1-5,1627-1623;7-14,1621-1614;15-21,1612-1606	6-6,1622-1622[SIL];x-x,1613-1613[BULt]	(((((((.((((((((.(((((&))))).))))))))-)))))))	AGGAGGGCAAGAGAAAAGGAGG&CUUCUAUUUUUUUU-CUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1631_c0_g1_1618_TPlot.pdf
TRINITY_DN1631_c0_g1:1619	si_s70	TRINITY_DN1631_c0_g1	1607	1628	1619	-25.80	-17.30	0.670542635658915	8.5	2-6,1627-1623;8-15,1621-1614;16-21,1612-1607	1-1,1628-1628[UP5];7-7,1622-1622[SIL];x-x,1613-1613[BULt]	((((((.((((((((.(((((.&.))))).))))))))-))))))	GGAGGGCAAGAGAAAAGGAGGC&ACUUCUAUUUUUUUU-CUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1631_c0_g1_1619_TPlot.pdf
TRINITY_DN1631_c0_g1:1643	si_s624	TRINITY_DN1631_c0_g1	1630	1656	1643	-37.90	-25.60	0.675461741424802	13	1-6,1656-1651;7-15,1646-1638;16-21,1635-1630	x-x,1650-1647[BULt];x-x,1637-1636[BULt]	((((((..(((((((((....((((((&))))))----)))))))))--))))))	GCCUAUCAGGAGAGAUUGAGGGCUUGG&CCAAGC----GAUCUUUUC--GUAGGC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN1631_c0_g1_1643_TPlot.pdf
TRINITY_DN1631_c0_g1:1662	si_a791	TRINITY_DN1631_c0_g1	1649	1671	1662	-26.50	-17.40	0.656603773584906	9	3-10,1669-1662;11-18,1660-1653;19-21,1651-1649	1-2,1671-1670[UP5];x-x,1661-1661[BULt];x-x,1652-1652[BULt]	(((.((((((((.((((((((..&..))))))))-))))))))-)))	GGGCUUGGGAAACUAGAGAGAGG&UAUUUUUCUA-UUUUCCAA-UCC	3	0.999999957098351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1631_c0_g1_1662_TPlot.pdf
TRINITY_DN1631_c0_g1:1704	si_s72	TRINITY_DN1631_c0_g1	1693	1712	1704	-24.10	-16.00	0.663900414937759	9.5	3-4,1710-1709;6-21,1708-1693	1-2,1712-1711[UP5];5-5,x-x[BULq]	((((((((((((((((-((..&..)).))))))))))))))))	AAGGAAAGGGAGAAGG-AGCG&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1631_c0_g1_1704_TPlot.pdf
TRINITY_DN1631_c0_g1:1717	si_s83	TRINITY_DN1631_c0_g1	1701	1728	1717	-30.90	-20.40	0.660194174757282	16	1-5,1728-1724;6-11,1721-1716;12-21,1710-1701	x-x,1723-1722[BULt];x-x,1715-1711[BULt]	((((((((((.....((((((..(((((&)))))--))))))-----))))))))))	GGAGAAGGAGCGCUUGAAGGAGGAAGAA&UUCUU--UCCUUU-----CUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1631_c0_g1_1717_TPlot.pdf
TRINITY_DN1631_c0_g1:1721	si_s90	TRINITY_DN1631_c0_g1	1705	1730	1721	-35.30	-24.10	0.68271954674221	9.5	1-13,1730-1718;14-19,1712-1707	x-x,1717-1713[BULt];20-21,1706-1705[UP3]	..((((((.....(((((((((((((&)))))))))))))-----))))))..	AAGGAGCGCUUGAAGGAGGAAGAAAG&CUUUCUUCUUCUU-----CGCUUCGG	3	0.99999999971679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1631_c0_g1_1721_TPlot.pdf
TRINITY_DN1631_c0_g1:1722	si_s89	TRINITY_DN1631_c0_g1	1706	1731	1722	-35.30	-24.50	0.694050991501416	9	2-14,1730-1718;15-20,1712-1707	1-1,1731-1731[UP5];x-x,1717-1713[BULt];21-21,1706-1706[UP3]	.((((((.....(((((((((((((.&.)))))))))))))-----)))))).	AGGAGCGCUUGAAGGAGGAAGAAAGA&CCUUUCUUCUUCUU-----CGCUUCG	2	0.999983747890884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1631_c0_g1_1722_TPlot.pdf
TRINITY_DN1631_c0_g1:1723	si_s88	TRINITY_DN1631_c0_g1	1707	1733	1723	-34.80	-24.80	0.71264367816092	9	1-2,1733-1732;3-15,1730-1718;16-21,1712-1707	x-x,1731-1731[BULt];x-x,1717-1713[BULt]	((((((.....(((((((((((((.((&))-)))))))))))))-----))))))	GGAGCGCUUGAAGGAGGAAGAAAGAGA&UC-CUUUCUUCUUCUU-----CGCUUC	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1631_c0_g1_1723_TPlot.pdf
TRINITY_DN1631_c0_g1:1724	si_s87	TRINITY_DN1631_c0_g1	1708	1734	1724	-32.90	-23.20	0.70516717325228	9	1-3,1734-1732;4-16,1730-1718;17-21,1712-1708	x-x,1731-1731[BULt];x-x,1717-1713[BULt]	(((((.....(((((((((((((.(((&)))-)))))))))))))-----)))))	GAGCGCUUGAAGGAGGAAGAAAGAGAA&UUC-CUUUCUUCUUCUU-----CGCUU	2	0.999997753698631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1631_c0_g1_1724_TPlot.pdf
TRINITY_DN1631_c0_g1:1725	si_s82	TRINITY_DN1631_c0_g1	1714	1733	1725	-28.90	-20.30	0.70242214532872	6.5	1-8,1733-1726;10-19,1725-1716	9-9,x-x[BULq];20-21,1715-1714[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	UUGAAGGAGGAA-GAAAGAGA&UUUCUUUCCUUUCUUCUUCUU	2	0.999999999997889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1631_c0_g1_1725_TPlot.pdf
TRINITY_DN1631_c0_g1:1727	si_s75	TRINITY_DN1631_c0_g1	1715	1736	1727	-24.00	-17.40	0.725	8	3-15,1734-1722;16-20,1720-1716	1-2,1736-1735[UP5];x-x,1721-1721[BULt];21-21,1715-1715[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UGAAGGAGGAAGAAAGAGAACA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1631_c0_g1_1727_TPlot.pdf
TRINITY_DN1631_c0_g1:1890	si_s69	TRINITY_DN1631_c0_g1	1879	1899	1890	-23.40	-16.30	0.696581196581197	7	3-16,1897-1884;18-21,1882-1879	1-2,1899-1898[UP5];17-17,1883-1883[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAAAAGGAAGAAAUAGAGGAA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999992761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1631_c0_g1_1890_TPlot.pdf
TRINITY_DN1631_c0_g1:1968	si_s78	TRINITY_DN1631_c0_g1	1958	1977	1968	-26.20	-17.70	0.675572519083969	7	1-8,1977-1970;10-15,1968-1963;17-20,1962-1959	9-9,1969-1969[SIL];16-16,x-x[BULq];21-21,1958-1958[UP3]	.((((-((((((.((((((((&)))))))).)))))).)))).	CGAAG-AAGGAGCGAGAAGAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1631_c0_g1_1968_TPlot.pdf
TRINITY_DN1631_c0_g1:2477	si_s803	TRINITY_DN1631_c0_g1	2456	2486	2477	-26.00	-17.10	0.657692307692308	17.5	4-14,2483-2473;15-21,2462-2456	1-3,2486-2484[UP5];x-x,2472-2463[BULt]	(((((((..........(((((((((((...&...)))))))))))----------)))))))	GAGAGGUUUUUAAUCCAGACGAAGAUGAUAG&AUUUUAUCUUCGUU----------ACCUUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1631_c0_g1_2477_TPlot.pdf
TRINITY_DN1631_c0_g1:2571	si_s79	TRINITY_DN1631_c0_g1	2560	2580	2571	-26.20	-18.60	0.709923664122137	5.5	1-9,2580-2572;11-12,2570-2569;14-21,2567-2560	10-10,2571-2571[SIL];13-13,2568-2568[SIL]	((((((((.((.(((((((((&))))))))).)).))))))))	AAGGAGAACGGCGAGAAGAAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1631_c0_g1_2571_TPlot.pdf
TRINITY_DN1631_c0_g1:2892	si_s62	TRINITY_DN1631_c0_g1	2881	2901	2892	-26.50	-19.20	0.724528301886792	6	2-16,2900-2886;18-21,2884-2881	1-1,2901-2901[UP5];17-17,2885-2885[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	AAAAUGUGGAGGUUGUUAAUA&AGUUAGCAACUUCUAUUUUUU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN1631_c0_g1_2892_TPlot.pdf
TRINITY_DN1631_c0_g1:771	si_s83	TRINITY_DN1631_c0_g1	753	780	771	-30.90	-20.30	0.656957928802589	20.5	4-10,777-771;11-21,763-753	1-3,780-778[UP5];x-x,770-764[BULt]	(((((((((((.......(((((((...&...)))))))-------)))))))))))	GAAGAGGAAGAACUAGAUGAGGAAACCC&UUCUUUCCUU-------UCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1631_c0_g1_771_TPlot.pdf
TRINITY_DN1632_c0_g2:1491	si_s526	TRINITY_DN1632_c0_g2	1480	1500	1491	-25.60	-16.70	0.65234375	10	3-6,1498-1495;9-11,1492-1490;13-21,1488-1480	1-2,1500-1499[UP5];7-8,1494-1493[SIL];12-12,1489-1489[SIL]	(((((((((.(((..((((..&..))))..))).)))))))))	GAUCGAAGAAGAUGGCGAAAA&AAUUCGAAAUCAUUUUUGAUC	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN1632_c0_g2_1491_TPlot.pdf
TRINITY_DN1632_c0_g2:1604	si_a836	TRINITY_DN1632_c0_g2	1593	1613	1604	-24.10	-16.10	0.66804979253112	16.5	8-18,1606-1596	1-7,1613-1607[UP5];19-21,1595-1593[UP3]	...(((((((((((.......&.......)))))))))))...	UCCGCGACUUCUAUGAACUCU&AAAAAAAAUAGAAGUUGCUAA	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN1632_c0_g2_1604_TPlot.pdf
TRINITY_DN16330_c0_g1:4287	si_s59	TRINITY_DN16330_c0_g1	4277	4296	4287	-29.20	-22.50	0.770547945205479	7	1-11,4296-4286;13-19,4285-4279	12-12,x-x[BULq];20-21,4278-4277[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	UUGUGGGGG-UGCUAGCUUGA&UCAAGUUAGCAACUUCUAUUU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN16330_c0_g1_4287_TPlot.pdf
TRINITY_DN16330_c0_g1:4288	si_s58	TRINITY_DN16330_c0_g1	4278	4297	4288	-29.30	-22.60	0.771331058020478	6	2-12,4296-4286;14-20,4285-4279	1-1,4297-4297[UP5];13-13,x-x[BULq];21-21,4278-4278[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	UGUGGGGG-UGCUAGCUUGAC&UUCAAGUUAGCAACUUCUAUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN16330_c0_g1_4288_TPlot.pdf
TRINITY_DN16330_c0_g1:4291	si_s55	TRINITY_DN16330_c0_g1	4281	4300	4291	-30.80	-23.30	0.756493506493507	6.5	1-3,4300-4298;5-15,4296-4286;17-21,4285-4281	4-4,4297-4297[SIL];16-16,x-x[BULq]	(((((-(((((((((((.(((&))).))))))))))).)))))	GGGGG-UGCUAGCUUGACGUC&GAUUUCAAGUUAGCAACUUCU	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN16330_c0_g1_4291_TPlot.pdf
TRINITY_DN16330_c0_g1:4292	si_s54	TRINITY_DN16330_c0_g1	4281	4301	4292	-32.50	-22.40	0.689230769230769	7	2-4,4300-4298;6-16,4296-4286;18-21,4284-4281	1-1,4301-4301[UP5];5-5,4297-4297[SIL];17-17,4285-4285[SIL]	((((.(((((((((((.(((.&.))).))))))))))).))))	GGGGGUGCUAGCUUGACGUCA&GGAUUUCAAGUUAGCAACUUC	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s54_TRINITY_DN16330_c0_g1_4292_TPlot.pdf
TRINITY_DN16330_c0_g1:4620	si_a401	TRINITY_DN16330_c0_g1	4609	4629	4620	-22.60	-15.10	0.668141592920354	9	1-6,4629-4624;9-17,4621-4613	7-8,4623-4622[SIL];18-21,4612-4609[UP3]	....(((((((((..((((((&))))))..)))))))))....	GAAAAAACAAAACUUUUCUGU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999042038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN16330_c0_g1_4620_TPlot.pdf
TRINITY_DN16330_c0_g1:4621	si_a400	TRINITY_DN16330_c0_g1	4610	4630	4621	-22.80	-15.10	0.662280701754386	9	2-7,4629-4624;10-18,4621-4613	1-1,4630-4630[UP5];8-9,4623-4622[SIL];19-21,4612-4610[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	AAAAAACAAAACUUUUCUGUC&UAUAGAAUUGUUUUGUUUAUA	2	0.999997889226889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN16330_c0_g1_4621_TPlot.pdf
TRINITY_DN16330_c0_g1:4622	si_a399	TRINITY_DN16330_c0_g1	4611	4631	4622	-22.60	-15.10	0.668141592920354	10	3-8,4629-4624;11-19,4621-4613	1-2,4631-4630[UP5];9-10,4623-4622[SIL];20-21,4612-4611[UP3]	..(((((((((..((((((..&..))))))..)))))))))..	AAAAACAAAACUUUUCUGUCU&AUAUAGAAUUGUUUUGUUUAU	2	0.999987640717283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN16330_c0_g1_4622_TPlot.pdf
TRINITY_DN16330_c0_g1:4623	si_a398	TRINITY_DN16330_c0_g1	4612	4632	4623	-22.40	-15.10	0.674107142857143	11	4-9,4629-4624;12-20,4621-4613	1-3,4632-4630[UP5];10-11,4623-4622[SIL];21-21,4612-4612[UP3]	.(((((((((..((((((...&...))))))..))))))))).	AAAACAAAACUUUUCUGUCUG&AAUAUAGAAUUGUUUUGUUUA	4	0.999999884867925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN16330_c0_g1_4623_TPlot.pdf
TRINITY_DN16330_c2_g1:562	si_a325	TRINITY_DN16330_c2_g1	549	571	562	-25.90	-17.10	0.66023166023166	10.5	4-14,568-558;15-21,555-549	1-3,571-569[UP5];x-x,557-556[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	ACAGGGGCAGUAAAGAGAUCUGG&CAUGAUUUUUUUAU--UCCUUGU	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN16330_c2_g1_562_TPlot.pdf
TRINITY_DN16334_c0_g1:1152	si_s75	TRINITY_DN16334_c0_g1	1140	1161	1152	-24.00	-17.00	0.708333333333333	8.5	4-18,1158-1144;19-20,1142-1141	1-3,1161-1159[UP5];x-x,1143-1143[BULt];21-21,1140-1140[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	UGAUAGGGAAAGAAAAAGACGU&UAUUUUUUUUCUUUCCUU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN16334_c0_g1_1152_TPlot.pdf
TRINITY_DN16336_c0_g1:172	si_a472	TRINITY_DN16336_c0_g1	161	180	172	-21.50	-14.30	0.665116279069767	8.5	4-9,177-172;11-21,171-161	1-3,180-178[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	UGUAUGGCAAU-AUUACAAGG&AUAUGUAAUUAUUGUUAUAUA	0	0.257087076331069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN16336_c0_g1_172_TPlot.pdf
TRINITY_DN16337_c0_g1:1205	si_s125	TRINITY_DN16337_c0_g1	1194	1214	1205	-27.20	-18.40	0.676470588235294	13	6-18,1209-1197	1-5,1214-1210[UP5];19-21,1196-1194[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUAGAUUCAAUUCUUCGAUAG&AAAUAGAAGAGUUGAAUCAAU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN16337_c0_g1_1205_TPlot.pdf
TRINITY_DN16337_c0_g1:1206	si_s124	TRINITY_DN16337_c0_g1	1195	1215	1206	-27.10	-18.40	0.678966789667897	14	7-19,1209-1197	1-6,1215-1210[UP5];20-21,1196-1195[UP3]	..(((((((((((((......&......)))))))))))))..	UAGAUUCAAUUCUUCGAUAGU&AAAAUAGAAGAGUUGAAUCAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN16337_c0_g1_1206_TPlot.pdf
TRINITY_DN16355_c1_g1:534	si_a835	TRINITY_DN16355_c1_g1	523	544	534	-26.00	-18.80	0.723076923076923	7	1-5,544-540;8-21,536-523	6-7,539-537[AILt]	((((((((((((((...(((((&)))))-..))))))))))))))	UGGCAAUUUCUAUUAUGUUUUC&GAAAA-AAAAUAGAAGUUGCUA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN16355_c1_g1_534_TPlot.pdf
TRINITY_DN1635_c0_g1:793	si_a790	TRINITY_DN1635_c0_g1	783	802	793	-25.80	-17.40	0.674418604651163	7	1-13,802-790;16-20,788-784	14-15,789-789[AILq];21-21,783-783[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	UAUUGGU-AGUAGAGAGAUGG&CUAUUUUUCUAUUUUCCAAUC	4	0.999989635785725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN1635_c0_g1_793_TPlot.pdf
TRINITY_DN1635_c0_g1:794	si_a789	TRINITY_DN1635_c0_g1	784	803	794	-24.80	-17.40	0.701612903225806	6.5	2-14,802-790;17-21,788-784	1-1,803-803[UP5];15-16,789-789[AILq]	(((((.-(((((((((((((.&.)))))))))))))..)))))	AUUGGU-AGUAGAGAGAUGGC&UCUAUUUUUCUAUUUUCCAAU	2	0.999190583655494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1635_c0_g1_794_TPlot.pdf
TRINITY_DN1635_c0_g1:795	si_a788	TRINITY_DN1635_c0_g1	785	804	795	-24.80	-16.40	0.661290322580645	8.5	3-15,802-790;18-21,788-785	1-2,804-803[UP5];16-17,789-789[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	UUGGU-AGUAGAGAGAUGGCA&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1635_c0_g1_795_TPlot.pdf
TRINITY_DN16364_c0_g1:23	si_a762	TRINITY_DN16364_c0_g1	13	32	23	-29.70	-20.40	0.686868686868687	6.5	1-14,32-19;17-21,17-13	15-16,18-18[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	GAGUUC-UUAAGAACCCGGAG&CUUUGGGUUUUUGAUUGAUUC	3	0.999957295187837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN16364_c0_g1_23_TPlot.pdf
TRINITY_DN16364_c0_g1:258	si_a451	TRINITY_DN16364_c0_g1	246	267	258	-23.60	-17.40	0.73728813559322	7.5	2-16,266-252;17-20,250-247	1-1,267-267[UP5];x-x,251-251[BULt];21-21,246-246[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	GGUGUAAUAGCAGCAAUUGUUC&AGAUAAUUGUUGUUAU-AUAUA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN16364_c0_g1_258_TPlot.pdf
TRINITY_DN16364_c0_g1:261	si_a448	TRINITY_DN16364_c0_g1	250	271	261	-25.50	-18.60	0.729411764705882	7	1-6,271-266;7-19,264-252	x-x,265-265[BULt];20-21,251-250[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	UAAUAGCAGCAAUUGUUCUUAU&AUGAGA-UAAUUGUUGUUAUAU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN16364_c0_g1_261_TPlot.pdf
TRINITY_DN16364_c0_g1:27	si_a758	TRINITY_DN16364_c0_g1	16	36	27	-34.00	-22.20	0.652941176470588	9	3-18,34-19	1-2,36-35[UP5];19-21,18-16[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCUUAAGAACCCGGAGGACU&CCUCCUUUGGGUUUUUGAUUG	4	0.999999993600949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN16364_c0_g1_27_TPlot.pdf
TRINITY_DN16364_c0_g2:308	si_s639	TRINITY_DN16364_c0_g2	297	318	308	-40.60	-27.10	0.667487684729064	11	1-8,318-311;9-16,309-302	x-x,310-310[BULt];17-21,301-297[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	CGGCAGAGGGCAGUGCGUCUGC&GUAGGCGU-UUGCCCUCGAUAC	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN16364_c0_g2_308_TPlot.pdf
TRINITY_DN16364_c0_g2:313	si_s635	TRINITY_DN16364_c0_g2	301	322	313	-39.80	-27.20	0.683417085427136	13.5	5-12,318-311;13-20,309-302	1-4,322-319[UP5];x-x,310-310[BULt];21-21,301-301[UP3]	.((((((((.((((((((....&....))))))))-)))))))).	AGAGGGCAGUGCGUCUGCAAGA&UUUCGUAGGCGU-UUGCCCUCG	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN16364_c0_g2_313_TPlot.pdf
TRINITY_DN16364_c0_g2:314	si_s634	TRINITY_DN16364_c0_g2	302	323	314	-38.30	-27.20	0.710182767624021	7	1-4,323-320;6-13,318-311;14-21,309-302	5-5,319-319[SIL];x-x,310-310[BULt]	((((((((.((((((((.((((&)))).))))))))-))))))))	GAGGGCAGUGCGUCUGCAAGAA&UUUUCGUAGGCGU-UUGCCCUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN16364_c0_g2_314_TPlot.pdf
TRINITY_DN16364_c0_g2:315	si_s633	TRINITY_DN16364_c0_g2	303	324	315	-37.90	-26.50	0.699208443271768	7	1-5,324-320;7-14,318-311;15-21,309-303	6-6,319-319[SIL];x-x,310-310[BULt]	(((((((.((((((((.(((((&))))).))))))))-)))))))	AGGGCAGUGCGUCUGCAAGAAG&CUUUUCGUAGGCGU-UUGCCCU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN16364_c0_g2_315_TPlot.pdf
TRINITY_DN16364_c0_g2:459	si_s414	TRINITY_DN16364_c0_g2	448	468	459	-24.90	-16.70	0.670682730923695	15	6-18,463-451	1-5,468-464[UP5];19-21,450-448[UP3]	...(((((((((((((.....&.....)))))))))))))...	GACUGUGGAGUGUGUCAUUGC&AAAACGACAUAUUCUAUAUAA	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN16364_c0_g2_459_TPlot.pdf
TRINITY_DN16364_c0_g2:460	si_s413	TRINITY_DN16364_c0_g2	449	469	460	-24.80	-16.70	0.673387096774194	15.5	7-19,463-451	1-6,469-464[UP5];20-21,450-449[UP3]	..(((((((((((((......&......)))))))))))))..	ACUGUGGAGUGUGUCAUUGCA&AAAAACGACAUAUUCUAUAUA	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN16364_c0_g2_460_TPlot.pdf
TRINITY_DN16364_c0_g2:473	si_a504	TRINITY_DN16364_c0_g2	462	483	473	-32.90	-21.80	0.662613981762918	7	1-7,483-477;8-15,475-468;17-20,466-463	x-x,476-476[BULt];16-16,467-467[SIL];21-21,462-462[UP3]	.((((.((((((((.(((((((&)))))))-)))))))).)))).	UCAUUGCAAGGAAGAAUGGGAA&UUUUCGU-CUUCCUUGGAAUGU	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN16364_c0_g2_473_TPlot.pdf
TRINITY_DN16364_c0_g2:474	si_a503	TRINITY_DN16364_c0_g2	463	484	474	-32.10	-22.00	0.685358255451713	6.5	1-8,484-477;9-16,475-468;18-21,466-463	x-x,476-476[BULt];17-17,467-467[SIL]	((((.((((((((.((((((((&))))))))-)))))))).))))	CAUUGCAAGGAAGAAUGGGAAG&UUUUUCGU-CUUCCUUGGAAUG	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN16364_c0_g2_474_TPlot.pdf
TRINITY_DN16364_c0_g2:481	si_s79	TRINITY_DN16364_c0_g2	470	490	481	-26.20	-18.00	0.687022900763359	11.5	5-12,486-479;14-21,477-470	1-4,490-487[UP5];13-13,478-478[SIL]	((((((((.((((((((....&....)))))))).))))))))	AGGAAGAAUGGGAAGGGCCAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN16364_c0_g2_481_TPlot.pdf
TRINITY_DN16364_c0_g2:482	si_s78	TRINITY_DN16364_c0_g2	471	491	482	-26.20	-17.20	0.656488549618321	13.5	6-13,486-479;15-21,477-471	1-5,491-487[UP5];14-14,478-478[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	GGAAGAAUGGGAAGGGCCAAA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN16364_c0_g2_482_TPlot.pdf
TRINITY_DN16366_c0_g1:153	si_a454	TRINITY_DN16366_c0_g1	143	162	153	-21.30	-14.70	0.690140845070423	7	3-14,160-149;16-20,148-144	1-2,162-161[UP5];15-15,x-x[BULq];21-21,143-143[UP3]	.(((((-((((((((((((..&..)))))))))))).))))).	GGUUGU-UAUAACAACGAUGA&UAAUUGUUGUUAUAUAUAAUA	2	0.992673290620823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN16366_c0_g1_153_TPlot.pdf
TRINITY_DN16366_c0_g1:437	si_a296	TRINITY_DN16366_c0_g1	425	446	437	-26.80	-18.20	0.67910447761194	9.5	1-10,446-437;12-19,434-427	11-11,436-435[AILt];20-21,426-425[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	UUGGCGAAUUGCUUUUUGGAUC&GAUUUAAAAA-AGAUUCGCUUG	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a296_TRINITY_DN16366_c0_g1_437_TPlot.pdf
TRINITY_DN16366_c0_g1:438	si_a295	TRINITY_DN16366_c0_g1	426	447	438	-27.50	-18.40	0.669090909090909	9	2-11,446-437;13-20,434-427	1-1,447-447[UP5];12-12,436-435[AILt];21-21,426-426[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	UGGCGAAUUGCUUUUUGGAUCG&GGAUUUAAAAA-AGAUUCGCUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN16366_c0_g1_438_TPlot.pdf
TRINITY_DN16369_c1_g1:563	si_a409	TRINITY_DN16369_c1_g1	552	572	563	-19.50	-12.70	0.651282051282051	7	1-16,572-557	17-21,556-552[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUCAAUAAGUAUAAAUAAAAU&GUUUUGUUUAUAUUUAAAUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN16369_c1_g1_563_TPlot.pdf
TRINITY_DN16369_c1_g1:566	si_a406	TRINITY_DN16369_c1_g1	555	575	566	-19.80	-14.60	0.737373737373737	5.5	2-19,574-557	1-1,575-575[UP5];20-21,556-555[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAUAAGUAUAAAUAAAAUAAA&AUUGUUUUGUUUAUAUUUAAA	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN16369_c1_g1_566_TPlot.pdf
TRINITY_DN16369_c1_g1:568	si_a404	TRINITY_DN16369_c1_g1	557	577	568	-21.70	-14.40	0.663594470046083	7.5	4-21,574-557	1-3,577-575[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAAGUAUAAAUAAAAUAAAUU&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN16369_c1_g1_568_TPlot.pdf
TRINITY_DN16369_c1_g1:600	si_a785	TRINITY_DN16369_c1_g1	589	608	600	-25.90	-19.02	0.734362934362934	10	1-7,608-602;12-21,598-589	8-11,601-599[AILq]	((((((((((...-(((((((&)))))))....))))))))))	GAGAAUGGAAUUA-AGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN16369_c1_g1_600_TPlot.pdf
TRINITY_DN1636_c0_g1:855	si_a641	TRINITY_DN1636_c0_g1	844	864	855	-23.60	-15.60	0.661016949152542	7	1-17,864-848	18-21,847-844[UP3]	....(((((((((((((((((&)))))))))))))))))....	GACAAUAUUAUUCAAGAAGAU&AUUUUUUUGAGUAAUAUAUCG	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN1636_c0_g1_855_TPlot.pdf
TRINITY_DN16371_c0_g3:2546	si_a765	TRINITY_DN16371_c0_g3	2535	2555	2546	-30.50	-21.20	0.695081967213115	6.5	1-17,2555-2539	18-21,2538-2535[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGCUAAUCGAUCAAAGACCUA&UGGGUUUUUGAUUGAUUCAAC	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN16371_c0_g3_2546_TPlot.pdf
TRINITY_DN16373_c0_g1:11343	si_s512	TRINITY_DN16373_c0_g1	11331	11352	11343	-24.80	-19.10	0.770161290322581	6.5	3-16,11350-11337;17-21,11335-11331	1-2,11352-11351[UP5];x-x,11336-11336[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	UCGGGUUUGAGAAUAUGGAACC&AAUUCUAUAUUCUUAA-UUCGA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN16373_c0_g1_11343_TPlot.pdf
TRINITY_DN16373_c0_g1:3152	si_s92	TRINITY_DN16373_c0_g1	3141	3161	3152	-34.90	-22.70	0.650429799426934	14	7-19,3155-3143	1-6,3161-3156[UP5];20-21,3142-3141[UP3]	..(((((((((((((......&......)))))))))))))..	UCCCGAAGCGAAGGACUGCUU&UUCUUCUUCUUCGCUUCGGAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN16373_c0_g1_3152_TPlot.pdf
TRINITY_DN16373_c0_g2:160	si_a303	TRINITY_DN16373_c0_g2	149	170	160	-28.40	-19.90	0.700704225352113	10.5	3-5,168-166;7-19,163-151	1-2,170-169[UP5];6-6,165-164[AILt];20-21,150-149[UP3]	..(((((((((((((..(((..&..)))-.)))))))))))))..	CCAGAUCCAAGCGGAGACUUCC&AAAAG-AUUCGCUUGGAUUUAU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN16373_c0_g2_160_TPlot.pdf
TRINITY_DN16379_c0_g1:533	si_s12	TRINITY_DN16379_c0_g1	522	542	533	-22.80	-15.60	0.684210526315789	9	2-17,541-526	1-1,542-542[UP5];18-21,525-522[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGCGAAUAUGGUGAUAGUGAU&CUUAUUAUUACUAUAUUGAUU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN16379_c0_g1_533_TPlot.pdf
TRINITY_DN16379_c0_g1:535	si_s10	TRINITY_DN16379_c0_g1	524	544	535	-23.80	-15.60	0.65546218487395	10.5	4-19,541-526	1-3,544-542[UP5];20-21,525-524[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGAAUAUGGUGAUAGUGAUAA&UACUUAUUAUUACUAUAUUGA	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN16379_c0_g1_535_TPlot.pdf
TRINITY_DN1637_c0_g1:5169	si_a23	TRINITY_DN1637_c0_g1	5158	5178	5169	-22.80	-15.10	0.662280701754386	11	4-6,5175-5173;8-20,5171-5159	1-3,5178-5176[UP5];7-7,5172-5172[SIL];21-21,5158-5158[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	CCUUGGGACUAAAAUUGGCAC&UAUUUAUUUUUAGUUCUAAGA	4	0.999998861596865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1637_c0_g1_5169_TPlot.pdf
TRINITY_DN1637_c0_g1:5555	si_a155	TRINITY_DN1637_c0_g1	5544	5564	5555	-28.90	-21.60	0.747404844290658	3.5	1-20,5564-5545	21-21,5544-5544[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AAAUAGGUUGAUUUUAAAACA&UGUUUUAAGGUCAAUCUAUUC	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a155_TRINITY_DN1637_c0_g1_5555_TPlot.pdf
TRINITY_DN1637_c0_g2:1357	si_a759	TRINITY_DN1637_c0_g2	1346	1366	1357	-32.60	-22.10	0.677914110429448	6	2-13,1365-1354;15-20,1352-1347	1-1,1366-1366[UP5];14-14,1353-1353[SIL];21-21,1346-1346[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CUAAUCAUGGACUCAAAGGAA&CUCCUUUGGGUUUUUGAUUGA	3	0.999949787575333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN1637_c0_g2_1357_TPlot.pdf
TRINITY_DN1637_c0_g2:2307	si_a876	TRINITY_DN1637_c0_g2	2296	2316	2307	-27.30	-18.40	0.673992673992674	11	6-20,2311-2297	1-5,2316-2312[UP5];21-21,2296-2296[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUAUUGAUUGUAACUAUUAUA&AGAUUUAGUUGCAAUCAAUAU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN1637_c0_g2_2307_TPlot.pdf
TRINITY_DN1637_c0_g2:2308	si_a875	TRINITY_DN1637_c0_g2	2297	2317	2308	-27.10	-18.30	0.675276752767528	12	7-21,2311-2297	1-6,2317-2312[UP5]	(((((((((((((((......&......)))))))))))))))	UAUUGAUUGUAACUAUUAUAA&AAGAUUUAGUUGCAAUCAAUA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN1637_c0_g2_2308_TPlot.pdf
TRINITY_DN1637_c1_g1:1890	si_a490	TRINITY_DN1637_c1_g1	1874	1899	1890	-28.10	-19.10	0.679715302491103	8.5	1-13,1899-1887;14-20,1881-1875	x-x,1886-1882[BULt];21-21,1874-1874[UP3]	.(((((((.....(((((((((((((&)))))))))))))-----))))))).	UCGAAAGAAAUAUCGAUAUAUUCUGU&AUAGAAUAUGUCG-----UUUUUCGU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN1637_c1_g1_1890_TPlot.pdf
TRINITY_DN1637_c3_g1:273	si_a832	TRINITY_DN1637_c3_g1	262	282	273	-23.10	-17.60	0.761904761904762	5	1-6,282-277;8-10,275-273;12-21,271-262	7-7,276-276[SIL];11-11,272-272[SIL]	((((((((((.(((.((((((&)))))).))).))))))))))	CAGCUUCUGUAUUUGUUCUUU&AAAGAAAAAAAAUAGAAGUUG	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a832_TRINITY_DN1637_c3_g1_273_TPlot.pdf
TRINITY_DN1637_c3_g1:486	si_a328	TRINITY_DN1637_c3_g1	474	495	486	-30.10	-21.68	0.720265780730897	9.5	1-8,495-488;12-16,484-480;17-21,478-474	9-11,487-485[SIL];x-x,479-479[BULt]	(((((.(((((...((((((((&))))))))...)))))-)))))	GGGACUGAGGAUGUAGAAGAUC&GAUUUUUUUAUUCCUU-GUCCC	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1637_c3_g1_486_TPlot.pdf
TRINITY_DN1637_c3_g1:487	si_a327	TRINITY_DN1637_c3_g1	475	496	487	-28.40	-19.58	0.68943661971831	9.5	1-9,496-488;13-17,484-480;18-21,478-475	10-12,487-485[SIL];x-x,479-479[BULt]	((((.(((((...(((((((((&)))))))))...)))))-))))	GGACUGAGGAUGUAGAAGAUCA&UGAUUUUUUUAUUCCUU-GUCC	2	0.998374943667631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1637_c3_g1_487_TPlot.pdf
TRINITY_DN1637_c3_g1:529	si_a142	TRINITY_DN1637_c3_g1	518	538	529	-23.50	-15.30	0.651063829787234	7.5	1-14,538-525;16-18,523-521	15-15,524-524[SIL];19-21,520-518[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	UUUAAAGGAUGACGAUUAGUU&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999992102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1637_c3_g1_529_TPlot.pdf
TRINITY_DN1638_c0_g1:1021	si_s29	TRINITY_DN1638_c0_g1	1012	1030	1021	-26.40	-18.20	0.689393939393939	8	1-10,1030-1021;13-21,1020-1012	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	AUUGGAGGU--GGUUGCAGUU&GAUUGCAACUAAAUCUUUAAU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN1638_c0_g1_1021_TPlot.pdf
TRINITY_DN1638_c0_g1:1056	si_a297	TRINITY_DN1638_c0_g1	1044	1065	1056	-27.20	-18.00	0.661764705882353	12.5	6-13,1060-1053;15-21,1050-1044	1-5,1065-1061[UP5];14-14,1052-1051[AILt]	(((((((..((((((((.....&.....))))))))-.)))))))	CCGGGCGUCGUCUUUUUGGUUU&AUUUAAAAAAGAU-UCGCUUGG	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN1638_c0_g1_1056_TPlot.pdf
TRINITY_DN1638_c0_g1:1094	si_s245	TRINITY_DN1638_c0_g1	1082	1103	1094	-33.20	-23.50	0.707831325301205	8	1-6,1103-1098;8-13,1096-1091;14-18,1089-1085	7-7,1097-1097[SIL];x-x,1090-1090[BULt];19-21,1084-1082[UP3]	...(((((.((((((.((((((&)))))).))))))-)))))...	AGAAUCGGCGAGAUGGCUGUUG&CAAUAGGCAUUUC-CCGAUAUA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN1638_c0_g1_1094_TPlot.pdf
TRINITY_DN1638_c0_g1:1095	si_s244	TRINITY_DN1638_c0_g1	1083	1104	1095	-33.80	-24.90	0.736686390532544	7	1-7,1104-1098;9-14,1096-1091;15-19,1089-1085	8-8,1097-1097[SIL];x-x,1090-1090[BULt];20-21,1084-1083[UP3]	..(((((.((((((.(((((((&))))))).))))))-)))))..	GAAUCGGCGAGAUGGCUGUUGA&UCAAUAGGCAUUUC-CCGAUAU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN1638_c0_g1_1095_TPlot.pdf
TRINITY_DN1638_c0_g1:1257	si_s312	TRINITY_DN1638_c0_g1	1246	1266	1257	-29.00	-19.80	0.682758620689655	12.5	5-17,1262-1250;19-19,1248-1248	1-4,1266-1263[UP5];18-18,1249-1249[SIL];20-21,1247-1246[UP3]	..(.(((((((((((((....&....))))))))))))).)..	GCAGGAGAAGGACGGGACGAC&AAAAUUCUGUCCUUCUUGUUA	3	0.999999774367657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1638_c0_g1_1257_TPlot.pdf
TRINITY_DN1638_c0_g1:1852	si_a782	TRINITY_DN1638_c0_g1	1843	1861	1852	-26.40	-18.90	0.715909090909091	7	1-10,1861-1852;13-20,1851-1844	11-12,x-x[BULq];21-21,1843-1843[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	UAUGGAAGA--AGGAGAGUUG&CAACUCUUCUAUUUUUCUAUU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1638_c0_g1_1852_TPlot.pdf
TRINITY_DN1638_c0_g1:1858	si_s602	TRINITY_DN1638_c0_g1	1847	1867	1858	-28.10	-18.40	0.654804270462633	8.5	1-9,1867-1859;11-18,1857-1850	10-10,1858-1858[SIL];19-21,1849-1847[UP3]	...((((((((.(((((((((&))))))))).))))))))...	GAAGAAGGAGAGUUGUUUGGA&UCCAAGCGAAUCUUUUUUAAA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN1638_c0_g1_1858_TPlot.pdf
TRINITY_DN1638_c0_g1:1860	si_s600	TRINITY_DN1638_c0_g1	1849	1869	1860	-28.20	-18.40	0.652482269503546	9.5	3-11,1867-1859;13-20,1857-1850	1-2,1869-1868[UP5];12-12,1858-1858[SIL];21-21,1849-1849[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AGAAGGAGAGUUGUUUGGAAG&AAUCCAAGCGAAUCUUUUUUA	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN1638_c0_g1_1860_TPlot.pdf
TRINITY_DN1638_c0_g1:884	si_s168	TRINITY_DN1638_c0_g1	874	893	884	-45.40	-29.60	0.651982378854626	9.5	1-5,893-889;7-9,886-884;12-21,883-874	6-6,888-887[AILt];10-11,x-x[BULq]	((((((((((--(((..(((((&)))))-.)))..))))))))))	CGGGCGUCUU--CCUGGUGGCC&GGCCA-GGGGUAAAGAUGCCCG	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s168_TRINITY_DN1638_c0_g1_884_TPlot.pdf
TRINITY_DN1638_c0_g1:921	si_a312	TRINITY_DN1638_c0_g1	910	930	921	-31.20	-20.46	0.655769230769231	11	1-7,930-924;12-16,919-915;18-21,913-910	8-11,923-920[SIL];17-17,914-914[SIL]	((((.(((((....(((((((&)))))))....))))).))))	AGAUGGUGGGACCUUCCAAGC&GCUUGGAUUUAUCCAUGAUUU	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN1638_c0_g1_921_TPlot.pdf
TRINITY_DN1638_c0_g1:923	si_a310	TRINITY_DN1638_c0_g1	912	932	923	-33.70	-22.06	0.65459940652819	9	1-9,932-924;14-18,919-915;20-21,913-912	10-13,923-920[SIL];19-19,914-914[SIL]	((.(((((....(((((((((&)))))))))....))))).))	AUGGUGGGACCUUCCAAGCGA&UCGCUUGGAUUUAUCCAUGAU	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN1638_c0_g1_923_TPlot.pdf
TRINITY_DN16395_c0_g1:1090	si_s15	TRINITY_DN16395_c0_g1	1073	1099	1090	-25.60	-17.24	0.6734375	16	1-12,1099-1088;15-21,1079-1073	13-14,1087-1080[AILt]	(((((((........((((((((((((&))))))))))))------..)))))))	UGCAAUCUGUUCGUCUAUAGUAGUAGU&AUUAUUACUAUA------UUGAUUGCA	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN16395_c0_g1_1090_TPlot.pdf
TRINITY_DN16395_c0_g1:1097	si_s772	TRINITY_DN16395_c0_g1	1086	1106	1097	-23.20	-15.80	0.681034482758621	12.5	6-19,1101-1088	1-5,1106-1102[UP5];20-21,1087-1086[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCUAUAGUAGUAGUAAAGGAA&AUUAAUUACUAUUGCUAUAAA	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN16395_c0_g1_1097_TPlot.pdf
TRINITY_DN16395_c0_g1:1413	si_a145	TRINITY_DN16395_c0_g1	1402	1422	1413	-28.10	-19.90	0.708185053380783	6.5	2-18,1421-1405;20-20,1403-1403	1-1,1422-1422[UP5];19-19,1404-1404[SIL];21-21,1402-1402[UP3]	.(.(((((((((((((((((.&.))))))))))))))))).).	UUGUUGGAACGGCAACGAUUC&UAAUCGUUGUUGUUUUAAGGU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN16395_c0_g1_1413_TPlot.pdf
TRINITY_DN16395_c0_g1:1415	si_a143	TRINITY_DN16395_c0_g1	1404	1424	1415	-25.10	-19.40	0.772908366533864	8.5	4-20,1421-1405	1-3,1424-1422[UP5];21-21,1404-1404[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GUUGGAACGGCAACGAUUCCG&AUUAAUCGUUGUUGUUUUAAG	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN16395_c0_g1_1415_TPlot.pdf
TRINITY_DN16395_c0_g1:541	si_a717	TRINITY_DN16395_c0_g1	531	550	541	-32.40	-23.70	0.731481481481482	10	4-10,547-541;13-20,539-532	1-3,550-548[UP5];11-12,540-540[AILq];21-21,531-531[UP3]	.((((((((.-(((((((...&...)))))))..)))))))).	AGCCCGAGUU-CGAUUAUCUU&AAAAUAAUCGUUACUCGGGCA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN16395_c0_g1_541_TPlot.pdf
TRINITY_DN16395_c0_g1:542	si_a716	TRINITY_DN16395_c0_g1	532	551	542	-33.40	-23.20	0.694610778443114	10	5-11,547-541;14-21,539-532	1-4,551-548[UP5];12-13,540-540[AILq]	((((((((.-(((((((....&....)))))))..))))))))	GCCCGAGUU-CGAUUAUCUUA&CAAAAUAAUCGUUACUCGGGC	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN16395_c0_g1_542_TPlot.pdf
TRINITY_DN16395_c0_g1:543	si_a715	TRINITY_DN16395_c0_g1	533	560	543	-33.30	-21.80	0.654654654654655	18	1-5,560-556;6-12,547-541;15-21,539-533	x-x,555-548[BULt];13-14,540-540[AILq]	(((((((.-(((((((........(((((&)))))--------)))))))..)))))))	CCCGAGUU-CGAUUAUCUUAAGAGUUUGG&CCAAA--------AUAAUCGUUACUCGGG	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a715_TRINITY_DN16395_c0_g1_543_TPlot.pdf
TRINITY_DN16395_c0_g1:562	si_a785	TRINITY_DN16395_c0_g1	551	571	562	-25.90	-17.00	0.656370656370656	7.5	1-13,571-559;16-20,556-552	14-15,558-557[SIL];21-21,551-551[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	AAGAGUUUGGAGAUAGAGGAG&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN16395_c0_g1_562_TPlot.pdf
TRINITY_DN16395_c0_g1:563	si_a784	TRINITY_DN16395_c0_g1	552	572	563	-24.70	-17.00	0.688259109311741	7	2-14,571-559;17-21,556-552	1-1,572-572[UP5];15-16,558-557[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AGAGUUUGGAGAUAGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999995444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN16395_c0_g1_563_TPlot.pdf
TRINITY_DN16395_c0_g1:564	si_a783	TRINITY_DN16395_c0_g1	553	573	564	-24.70	-16.20	0.65587044534413	9	3-15,571-559;18-21,556-553	1-2,573-572[UP5];16-17,558-557[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GAGUUUGGAGAUAGAGGAGAA&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN16395_c0_g1_564_TPlot.pdf
TRINITY_DN16395_c0_g1:565	si_s610	TRINITY_DN16395_c0_g1	554	574	565	-27.20	-18.00	0.661764705882353	10.5	3-11,572-564;14-20,561-555	1-2,574-573[UP5];12-13,563-562[SIL];21-21,554-554[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	AGUUUGGAGAUAGAGGAGAAA&AAUCUUUUUUAAAUCCAAGCG	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN16395_c0_g1_565_TPlot.pdf
TRINITY_DN16399_c0_g1:32	si_s816	TRINITY_DN16399_c0_g1	20	41	32	-24.90	-18.70	0.751004016064257	5.5	1-11,41-31;12-18,29-23	x-x,30-30[BULt];19-21,22-20[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	AAACAUUAUUAAAGAAAAGGUG&UACCUUUUCUU-AAUAAUGAAA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN16399_c0_g1_32_TPlot.pdf
TRINITY_DN163_c0_g1:1178	si_a145	TRINITY_DN163_c0_g1	1170	1187	1178	-28.10	-18.60	0.661921708185053	8.5	3-13,1185-1175;17-21,1174-1170	1-2,1187-1186[UP5];14-16,x-x[BULq]	(((((---(((((((((((..&..)))))))))))...)))))	ACCUU---GCAACGGCGAUCU&UAAUCGUUGUUGUUUUAAGGU	2	0.999024445860172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN163_c0_g1_1178_TPlot.pdf
TRINITY_DN163_c0_g1:1668	si_s75	TRINITY_DN163_c0_g1	1656	1677	1668	-24.00	-16.10	0.670833333333333	11	5-16,1673-1662;17-21,1660-1656	1-4,1677-1674[UP5];x-x,1661-1661[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GGAAGUGGAAAGGGAAAAUUAU&UAUUUUUUUUCUUUCC-UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN163_c0_g1_1668_TPlot.pdf
TRINITY_DN163_c0_g1:2101	si_s96	TRINITY_DN163_c0_g1	2089	2111	2101	-37.20	-25.50	0.685483870967742	7	1-6,2111-2106;7-12,2104-2099;14-20,2096-2090	x-x,2105-2105[BULt];13-13,2098-2097[AILt];21-21,2089-2089[UP3]	.(((((((..((((((.((((((&))))))-))))))-.))))))).	CCCAAUCCUAAAGCGAGAGAGGA&UCUUCU-UCGCUU-CGGAUUGGA	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN163_c0_g1_2101_TPlot.pdf
TRINITY_DN163_c0_g1:2102	si_s95	TRINITY_DN163_c0_g1	2090	2112	2102	-36.30	-24.80	0.683195592286501	6	2-7,2111-2106;8-13,2104-2099;15-21,2096-2090	1-1,2112-2112[UP5];x-x,2105-2105[BULt];14-14,2098-2097[AILt]	(((((((..((((((.((((((.&.))))))-))))))-.)))))))	CCAAUCCUAAAGCGAGAGAGGAC&UUCUUCU-UCGCUU-CGGAUUGG	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN163_c0_g1_2102_TPlot.pdf
TRINITY_DN163_c0_g1:2111	si_s87	TRINITY_DN163_c0_g1	2099	2121	2111	-32.90	-22.10	0.671732522796353	7	1-6,2121-2116;8-9,2114-2113;10-15,2111-2106;16-21,2104-2099	7-7,2115-2115[SIL];x-x,2112-2112[BULt];x-x,2105-2105[BULt]	((((((.((((((.((.((((((&)))))).))-))))))-))))))	AAGCGAGAGAGGACAGCGAGGAA&UUCCUUUCU-UCUUCU-UCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN163_c0_g1_2111_TPlot.pdf
TRINITY_DN163_c0_g1:213	si_a312	TRINITY_DN163_c0_g1	202	225	213	-31.20	-20.50	0.657051282051282	12.5	1-7,225-219;8-17,215-206	x-x,218-216[BULt];18-21,205-202[UP3]	....((((((((((...(((((((&)))))))---))))))))))....	UUCAUAUGGAUAGGAAUUCCAAGC&GCUUGGA---UUUAUCCAUGAUUU	2	0.99689584287701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN163_c0_g1_213_TPlot.pdf
TRINITY_DN163_c0_g1:215	si_a310	TRINITY_DN163_c0_g1	204	227	215	-33.70	-22.00	0.652818991097923	11.5	2-9,226-219;10-19,215-206	1-1,227-227[UP5];x-x,218-216[BULt];20-21,205-204[UP3]	..((((((((((...((((((((.&.))))))))---))))))))))..	CAUAUGGAUAGGAAUUCCAAGCGC&UCGCUUGGA---UUUAUCCAUGAU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN163_c0_g1_215_TPlot.pdf
TRINITY_DN163_c0_g1:219	si_a309	TRINITY_DN163_c0_g1	205	228	219	-33.60	-22.00	0.654761904761905	12.5	3-10,226-219;11-20,215-206	1-2,228-227[UP5];x-x,218-216[BULt];21-21,205-205[UP3]	.((((((((((...((((((((..&..))))))))---)))))))))).	AUAUGGAUAGGAAUUCCAAGCGCC&UUCGCUUGGA---UUUAUCCAUGA	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN163_c0_g1_219_TPlot.pdf
TRINITY_DN163_c0_g1:220	si_a308	TRINITY_DN163_c0_g1	206	229	220	-32.70	-22.00	0.672782874617737	13	4-11,226-219;12-21,215-206	1-3,229-227[UP5];x-x,218-216[BULt]	((((((((((...((((((((...&...))))))))---))))))))))	UAUGGAUAGGAAUUCCAAGCGCCA&AUUCGCUUGGA---UUUAUCCAUG	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN163_c0_g1_220_TPlot.pdf
TRINITY_DN163_c0_g1:2239	si_a455	TRINITY_DN163_c0_g1	2228	2248	2239	-21.10	-14.70	0.696682464454976	12	5-18,2244-2231	1-4,2248-2245[UP5];19-21,2230-2228[UP3]	...((((((((((((((....&....))))))))))))))...	AUUUUGUGUAUAACAGCCUCA&AAUUGUUGUUAUAUAUAAUAU	3	0.999816563307628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN163_c0_g1_2239_TPlot.pdf
TRINITY_DN163_c0_g1:722	si_a659	TRINITY_DN163_c0_g1	710	731	722	-35.20	-25.30	0.71875	5	2-13,730-719;14-21,717-710	1-1,731-731[UP5];x-x,718-718[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	GAAUCGGUGAGGUAUUUUCCGC&UCGGGAAAUGCCU-AUUGAUUC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN163_c0_g1_722_TPlot.pdf
TRINITY_DN1640_c0_g1:4392	si_s10	TRINITY_DN1640_c0_g1	4381	4400	4392	-23.80	-17.10	0.718487394957983	6	1-5,4400-4396;7-21,4395-4381	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	UUAAUAUAGUAGUGA-AGGUG&UACUUAUUAUUACUAUAUUGA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN1640_c0_g1_4392_TPlot.pdf
TRINITY_DN1640_c0_g1:4439	si_s413	TRINITY_DN1640_c0_g1	4427	4448	4439	-24.80	-16.50	0.665322580645161	7.5	1-11,4448-4438;13-18,4435-4430	12-12,4437-4436[AILt];19-21,4429-4427[UP3]	...((((((..(((((((((((&)))))))))))-.))))))...	AUAAUGGAAAAAUGUCGUUUUU&AAAAACGACAU-AUUCUAUAUA	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN1640_c0_g1_4439_TPlot.pdf
TRINITY_DN1640_c0_g1:4615	si_s260	TRINITY_DN1640_c0_g1	4604	4624	4615	-24.10	-18.00	0.746887966804979	5.5	1-18,4624-4607	19-21,4606-4604[UP3]	...((((((((((((((((((&))))))))))))))))))...	CUAUUUUUUGGGUAAUGUAUU&GAUAUAUUACUCAAAAAAAUC	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN1640_c0_g1_4615_TPlot.pdf
TRINITY_DN1640_c0_g1:4617	si_s258	TRINITY_DN1640_c0_g1	4606	4627	4617	-25.90	-22.40	0.864864864864865	4.5	1-4,4627-4624;5-20,4622-4607	x-x,4623-4623[BULt];21-21,4606-4606[UP3]	.((((((((((((((((.((((&))))-)))))))))))))))).	AUUUUUUGGGUAAUGUAUUCGG&CCGA-UAUAUUACUCAAAAAAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s258_TRINITY_DN1640_c0_g1_4617_TPlot.pdf
TRINITY_DN1640_c0_g1:4620	si_s255	TRINITY_DN1640_c0_g1	4609	4630	4620	-29.40	-24.00	0.816326530612245	5.5	2-7,4629-4624;8-21,4622-4609	1-1,4630-4630[UP5];x-x,4623-4623[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UUUUGGGUAAUGUAUUCGGGGU&UUCCCGA-UAUAUUACUCAAAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN1640_c0_g1_4620_TPlot.pdf
TRINITY_DN1640_c0_g1:4621	si_s254	TRINITY_DN1640_c0_g1	4610	4631	4621	-29.40	-23.10	0.785714285714286	7.5	3-8,4629-4624;9-21,4622-4610	1-2,4631-4630[UP5];x-x,4623-4623[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UUUGGGUAAUGUAUUCGGGGUU&UUUCCCGA-UAUAUUACUCAAA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN1640_c0_g1_4621_TPlot.pdf
TRINITY_DN1640_c0_g1:4622	si_s253	TRINITY_DN1640_c0_g1	4611	4632	4622	-29.50	-22.20	0.752542372881356	9.5	4-9,4629-4624;10-21,4622-4611	1-3,4632-4630[UP5];x-x,4623-4623[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	UUGGGUAAUGUAUUCGGGGUUU&AUUUCCCGA-UAUAUUACUCAA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN1640_c0_g1_4622_TPlot.pdf
TRINITY_DN16412_c0_g1:35	si_a318	TRINITY_DN16412_c0_g1	24	45	35	-22.50	-14.90	0.662222222222222	11.5	6-7,40-39;8-21,37-24	1-5,45-41[UP5];x-x,38-38[BULt]	((((((((((((((.((.....&.....))-))))))))))))))	AUGAAAAAAUCAUGUGAAAUUG&AUUUAUC-CAUGAUUUUUUUAU	4	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN16412_c0_g1_35_TPlot.pdf
TRINITY_DN1642_c1_g1:2785	si_a398	TRINITY_DN1642_c1_g1	2774	2793	2785	-22.40	-18.20	0.8125	5.5	1-4,2793-2790;6-20,2789-2775	5-5,x-x[BULq];21-21,2774-2774[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	GGAGCAAGACAGUUCU-UAUU&AAUAUAGAAUUGUUUUGUUUA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1642_c1_g1_2785_TPlot.pdf
TRINITY_DN1642_c1_g1:2786	si_a397	TRINITY_DN1642_c1_g1	2775	2794	2786	-24.00	-18.10	0.754166666666667	5.5	2-5,2793-2790;7-21,2789-2775	1-1,2794-2794[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	GAGCAAGACAGUUCU-UAUUA&GAAUAUAGAAUUGUUUUGUUU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN1642_c1_g1_2786_TPlot.pdf
TRINITY_DN1642_c2_g1:1037	si_s432	TRINITY_DN1642_c2_g1	1026	1045	1037	-21.30	-14.80	0.694835680751174	7	1-8,1045-1038;10-18,1037-1029	9-9,x-x[BULq];19-21,1028-1026[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	CCAAAUAUGUGA-UGUUGUUA&UAACAAUAAUUACAUAUUAUA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN1642_c2_g1_1037_TPlot.pdf
TRINITY_DN1642_c2_g1:1039	si_s429	TRINITY_DN1642_c2_g1	1029	1048	1039	-21.10	-14.50	0.687203791469194	8.5	4-11,1045-1038;13-21,1037-1029	1-3,1048-1046[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AAUAUGUGA-UGUUGUUAACC&AUAUAACAAUAAUUACAUAUU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN1642_c2_g1_1039_TPlot.pdf
TRINITY_DN1642_c2_g1:376	si_a817	TRINITY_DN1642_c2_g1	363	385	376	-30.90	-20.50	0.663430420711974	8	1-12,385-374;14-18,370-366	13-13,373-371[AILt];19-21,365-363[UP3]	...(((((...((((((((((((&))))))))))))--.)))))...	UAUUUUCCCACUUCUUCUUCUUC&GAAGAAGAAGAA--AGGAAAGAA	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN1642_c2_g1_376_TPlot.pdf
TRINITY_DN1642_c2_g1:553	si_s710	TRINITY_DN1642_c2_g1	542	563	553	-32.00	-20.80	0.65	7	2-8,562-556;10-14,553-549;16-20,547-543	1-1,563-563[UP5];9-9,555-554[AILt];15-15,548-548[SIL];21-21,542-542[UP3]	.(((((.(((((..(((((((.&.)))))))-.))))).))))).	AAUCUUACCCUGCAUCACUAAA&AUUAGUGA-ACAGGGAAAGAUA	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s710_TRINITY_DN1642_c2_g1_553_TPlot.pdf
TRINITY_DN1643_c0_g1:2483	si_s446	TRINITY_DN1643_c0_g1	2472	2493	2483	-21.30	-14.10	0.661971830985915	10	1-6,2493-2488;8-19,2485-2474	7-7,2487-2486[AILt];20-21,2473-2472[UP3]	..((((((((((((..((((((&))))))-.))))))))))))..	ACAUUGUUGUUGUAAAGUGGUA&UAUUAU-AUAUAACAACAAUUA	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN1643_c0_g1_2483_TPlot.pdf
TRINITY_DN1643_c0_g1:2609	si_a788	TRINITY_DN1643_c0_g1	2598	2618	2609	-24.80	-17.40	0.701612903225806	9	5-19,2614-2600	1-4,2618-2615[UP5];20-21,2599-2598[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAGGAAAAUAGAAAAAUUCAC&UUCUAUUUUUCUAUUUUCCAA	4	0.999998837853321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1643_c0_g1_2609_TPlot.pdf
TRINITY_DN1645_c0_g1:2203	si_a455	TRINITY_DN1645_c0_g1	2192	2212	2203	-21.10	-14.00	0.663507109004739	7	3-15,2210-2198;17-21,2196-2192	1-2,2212-2211[UP5];16-16,2197-2197[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GUGUUUUAUAUAAUGACAAAC&AAUUGUUGUUAUAUAUAAUAU	4	0.999999989712558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN1645_c0_g1_2203_TPlot.pdf
TRINITY_DN1645_c0_g1:315	si_a323	TRINITY_DN1645_c0_g1	304	324	315	-26.80	-17.60	0.656716417910448	6.5	2-17,323-308	1-1,324-324[UP5];18-21,307-304[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUAAAGUAAAAAAGUCAUGGU&UCCAUGAUUUUUUUAUUCCUU	2	0.999991277418389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1645_c0_g1_315_TPlot.pdf
TRINITY_DN1645_c0_g1:316	si_a322	TRINITY_DN1645_c0_g1	305	325	316	-27.00	-17.60	0.651851851851852	7.5	3-18,323-308	1-2,325-324[UP5];19-21,307-305[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAAAGUAAAAAAGUCAUGGUA&AUCCAUGAUUUUUUUAUUCCU	0	0.363179799106149	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN1645_c0_g1_316_TPlot.pdf
TRINITY_DN1645_c0_g1:317	si_a321	TRINITY_DN1645_c0_g1	306	326	317	-26.70	-17.60	0.659176029962547	8.5	4-19,323-308	1-3,326-324[UP5];20-21,307-306[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAGUAAAAAAGUCAUGGUAU&UAUCCAUGAUUUUUUUAUUCC	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1645_c0_g1_317_TPlot.pdf
TRINITY_DN1645_c0_g1:318	si_a320	TRINITY_DN1645_c0_g1	307	327	318	-24.40	-17.60	0.721311475409836	9.5	5-20,323-308	1-4,327-324[UP5];21-21,307-307[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGUAAAAAAGUCAUGGUAUC&UUAUCCAUGAUUUUUUUAUUC	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1645_c0_g1_318_TPlot.pdf
TRINITY_DN1645_c0_g1:320	si_a318	TRINITY_DN1645_c0_g1	309	329	320	-22.50	-16.80	0.746666666666667	12	7-21,323-309	1-6,329-324[UP5]	(((((((((((((((......&......)))))))))))))))	GUAAAAAAGUCAUGGUAUCAC&AUUUAUCCAUGAUUUUUUUAU	2	0.985472190984285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1645_c0_g1_320_TPlot.pdf
TRINITY_DN16462_c0_g1:732	si_a403	TRINITY_DN16462_c0_g1	721	741	732	-22.00	-15.50	0.704545454545455	10	2-15,740-727	1-1,741-741[UP5];16-21,726-721[UP3]	......((((((((((((((.&.))))))))))))))......	AGGAGCGGACGAAACGAUUCA&AGAAUUGUUUUGUUUAUAUUU	4	0.999998629181848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN16462_c0_g1_732_TPlot.pdf
TRINITY_DN16462_c0_g1:734	si_a401	TRINITY_DN16462_c0_g1	723	743	734	-22.60	-15.50	0.685840707964602	11.5	4-17,740-727	1-3,743-741[UP5];18-21,726-723[UP3]	....((((((((((((((...&...))))))))))))))....	GAGCGGACGAAACGAUUCAUU&AUAGAAUUGUUUUGUUUAUAU	4	0.999998243863789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN16462_c0_g1_734_TPlot.pdf
TRINITY_DN16462_c0_g1:736	si_a399	TRINITY_DN16462_c0_g1	725	745	736	-22.60	-15.50	0.685840707964602	13.5	6-19,740-727	1-5,745-741[UP5];20-21,726-725[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCGGACGAAACGAUUCAUUGA&AUAUAGAAUUGUUUUGUUUAU	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN16462_c0_g1_736_TPlot.pdf
TRINITY_DN16462_c0_g1:737	si_a398	TRINITY_DN16462_c0_g1	726	746	737	-22.40	-15.50	0.691964285714286	14.5	7-20,740-727	1-6,746-741[UP5];21-21,726-726[UP3]	.((((((((((((((......&......)))))))))))))).	CGGACGAAACGAUUCAUUGAA&AAUAUAGAAUUGUUUUGUUUA	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN16462_c0_g1_737_TPlot.pdf
TRINITY_DN1646_c1_g1:1073	si_a669	TRINITY_DN1646_c1_g1	1064	1082	1073	-32.20	-21.50	0.667701863354037	6	1-11,1082-1072;14-21,1071-1064	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	UGUGGAUA--GAAUCGGUAGG&CCUAUUGAUUCCUUAUUCACG	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a669_TRINITY_DN1646_c1_g1_1073_TPlot.pdf
TRINITY_DN1646_c1_g1:1381	si_a709	TRINITY_DN1646_c1_g1	1370	1390	1381	-26.60	-19.00	0.714285714285714	3.5	1-12,1390-1379;15-17,1376-1374;19-21,1372-1370	13-14,1378-1377[SIL];18-18,1373-1373[SIL]	(((.(((..((((((((((((&))))))))))))..))).)))	UAGGGAUGCUUUUGGAAUGUA&UACAUUCCAAAAUAAUCGUUA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN1646_c1_g1_1381_TPlot.pdf
TRINITY_DN1646_c1_g1:1384	si_a706	TRINITY_DN1646_c1_g1	1373	1393	1384	-30.30	-20.80	0.686468646864686	6	3-15,1391-1379;18-20,1376-1374	1-2,1393-1392[UP5];16-17,1378-1377[SIL];21-21,1373-1373[UP3]	.(((..(((((((((((((..&..)))))))))))))..))).	GGAUGCUUUUGGAAUGUACGU&UGGUACAUUCCAAAAUAAUCG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a706_TRINITY_DN1646_c1_g1_1384_TPlot.pdf
TRINITY_DN1646_c1_g1:150	si_a410	TRINITY_DN1646_c1_g1	139	159	150	-17.80	-15.60	0.876404494382022	6	1-18,159-142	19-21,141-139[UP3]	...((((((((((((((((((&))))))))))))))))))...	UAAAUUUGGGUAUAGACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1646_c1_g1_150_TPlot.pdf
TRINITY_DN1646_c1_g1:1510	si_a495	TRINITY_DN1646_c1_g1	1499	1519	1510	-31.90	-21.00	0.658307210031348	6.5	2-4,1518-1516;6-19,1514-1501	1-1,1519-1519[UP5];5-5,1515-1515[SIL];20-21,1500-1499[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	UAAAGGCGAAAAACGGGAUAG&AUAUGUCGUUUUUCGUCUUCC	3	0.999999999958611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1646_c1_g1_1510_TPlot.pdf
TRINITY_DN1646_c1_g1:1513	si_a492	TRINITY_DN1646_c1_g1	1502	1522	1513	-30.20	-20.10	0.665562913907285	10.5	5-7,1518-1516;9-21,1514-1502	1-4,1522-1519[UP5];8-8,1515-1515[SIL]	(((((((((((((.(((....&....))).)))))))))))))	AGGCGAAAAACGGGAUAGAGA&AGAAUAUGUCGUUUUUCGUCU	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN1646_c1_g1_1513_TPlot.pdf
TRINITY_DN16472_c0_g1:721	si_a784	TRINITY_DN16472_c0_g1	710	730	721	-24.70	-18.10	0.732793522267207	9.5	2-15,729-716	1-1,730-730[UP5];16-21,715-710[UP3]	......((((((((((((((.&.))))))))))))))......	CCAUUCGGAGAAUAGAGGAGC&ACUCUUCUAUUUUUCUAUUUU	4	0.999982273507496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN16472_c0_g1_721_TPlot.pdf
TRINITY_DN1647_c0_g1:1444	si_s436	TRINITY_DN1647_c0_g1	1433	1453	1444	-19.60	-13.90	0.709183673469388	4.5	1-14,1453-1440;17-20,1437-1434	15-16,1439-1438[SIL];21-21,1433-1433[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AGUAUUAAAUGUGUAAUUAUU&AAUAAUUACAUAUUAUAUAUA	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN1647_c0_g1_1444_TPlot.pdf
TRINITY_DN1647_c0_g1:426	si_a321	TRINITY_DN1647_c0_g1	409	435	426	-26.70	-17.70	0.662921348314607	9	2-16,434-420;17-21,413-409	1-1,435-435[UP5];x-x,419-414[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	GGGAUUUGUUUGAAAAAAUUAUGGAUU&UAUCCAUGAUUUUUUU------AUUCC	0	0.22752317315578	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1647_c0_g1_426_TPlot.pdf
TRINITY_DN1647_c0_g1:429	si_a318	TRINITY_DN1647_c0_g1	418	438	429	-22.50	-16.40	0.728888888888889	9.5	5-20,434-419	1-4,438-435[UP5];21-21,418-418[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUGAAAAAAUUAUGGAUUAUU&AUUUAUCCAUGAUUUUUUUAU	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1647_c0_g1_429_TPlot.pdf
TRINITY_DN1648_c0_g1:1087	si_s76	TRINITY_DN1648_c0_g1	1076	1096	1087	-23.60	-15.90	0.673728813559322	6.5	2-12,1095-1085;15-21,1082-1076	1-1,1096-1096[UP5];13-14,1084-1083[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AAGAAGGACGAGAAGAAGAAG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1648_c0_g1_1087_TPlot.pdf
TRINITY_DN1648_c0_g1:1089	si_s69	TRINITY_DN1648_c0_g1	1078	1098	1089	-23.40	-16.40	0.700854700854701	7	2-7,1097-1092;9-14,1090-1085;16-21,1083-1078	1-1,1098-1098[UP5];8-8,1091-1091[SIL];15-15,1084-1084[SIL]	((((((.((((((.((((((.&.)))))).)))))).))))))	GAAGGACGAGAAGAAGAAGUA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1648_c0_g1_1089_TPlot.pdf
TRINITY_DN1648_c0_g1:1090	si_s74	TRINITY_DN1648_c0_g1	1077	1099	1090	-25.00	-17.00	0.68	8	1-11,1099-1089;12-14,1087-1085;15-20,1083-1078	x-x,1088-1088[BULt];x-x,1084-1084[BULt];21-21,1077-1077[UP3]	.((((((.(((.(((((((((((&)))))))))))-)))-)))))).	AGAAGGACGAGAAGAAGAAGUAG&CUAUUUUUUUU-CUU-UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1648_c0_g1_1090_TPlot.pdf
TRINITY_DN1648_c0_g1:1091	si_s73	TRINITY_DN1648_c0_g1	1078	1100	1091	-24.00	-18.20	0.758333333333333	7	1-12,1100-1089;13-15,1087-1085;16-21,1083-1078	x-x,1088-1088[BULt];x-x,1084-1084[BULt]	((((((.(((.((((((((((((&))))))))))))-)))-))))))	GAAGGACGAGAAGAAGAAGUAGA&UCUAUUUUUUUU-CUU-UCCUUU	3	0.999999886634672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1648_c0_g1_1091_TPlot.pdf
TRINITY_DN1648_c0_g1:1092	si_s72	TRINITY_DN1648_c0_g1	1079	1101	1092	-24.10	-17.20	0.713692946058091	6.5	2-13,1100-1089;14-16,1087-1085;17-21,1083-1079	1-1,1101-1101[UP5];x-x,1088-1088[BULt];x-x,1084-1084[BULt]	(((((.(((.((((((((((((.&.))))))))))))-)))-)))))	AAGGACGAGAAGAAGAAGUAGAC&UUCUAUUUUUUUU-CUU-UCCUU	2	0.999999998908502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1648_c0_g1_1092_TPlot.pdf
TRINITY_DN1648_c0_g1:626	si_a548	TRINITY_DN1648_c0_g1	614	635	626	-27.20	-18.00	0.661764705882353	11	5-17,631-619;18-21,617-614	1-4,635-632[UP5];x-x,618-618[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GAGGCUGAAGAAGUAGGUGUAG&UUCAAUCUAUUUCUUUA-UCUC	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN1648_c0_g1_626_TPlot.pdf
TRINITY_DN1648_c0_g1:987	si_s803	TRINITY_DN1648_c0_g1	976	996	987	-26.00	-17.60	0.676923076923077	8	2-10,995-987;13-21,984-976	1-1,996-996[UP5];11-12,986-985[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	AGAGGGUAAAAAAGAUGAGAA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999413034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1648_c0_g1_987_TPlot.pdf
TRINITY_DN16490_c0_g1:171	si_s599	TRINITY_DN16490_c0_g1	160	180	171	-27.80	-19.30	0.694244604316547	10	6-21,175-160	1-5,180-176[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAAAAGAUUUGCUUGUCAUA&AAAUCCAAGCGAAUCUUUUUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN16490_c0_g1_171_TPlot.pdf
TRINITY_DN16496_c0_g1:232	si_s817	TRINITY_DN16496_c0_g1	221	241	232	-24.50	-17.40	0.710204081632653	8.5	1-13,241-229;15-17,227-225	14-14,228-228[SIL];18-21,224-221[UP3]	....(((.(((((((((((((&))))))))))))).)))....	GAAACAUGGUUAGGAGAGGGU&ACCUUUUCUUAAUAAUGAAAA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN16496_c0_g1_232_TPlot.pdf
TRINITY_DN16496_c0_g1:240	si_s809	TRINITY_DN16496_c0_g1	229	255	240	-28.50	-22.20	0.778947368421053	17.5	1-8,255-248;9-21,241-229	x-x,247-242[BULt]	(((((((((((((......((((((((&))))))))------)))))))))))))	GUUAGGAGAGGGUGUCUUGGACGGGGA&UCUUCGUU------ACCUUUUCUUAAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN16496_c0_g1_240_TPlot.pdf
TRINITY_DN16498_c1_g1:48	si_a760	TRINITY_DN16498_c1_g1	36	57	48	-31.10	-21.90	0.704180064308682	10.5	1-11,57-47;14-19,43-38	12-13,46-44[AILt];20-21,37-36[UP3]	..((((((...(((((((((((&)))))))))))-..))))))..	AACGGUCGCGCAGCCCAGAGGA&UCCUUUGGGUU-UUUGAUUGAU	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN16498_c1_g1_48_TPlot.pdf
TRINITY_DN16498_c1_g1:50	si_a758	TRINITY_DN16498_c1_g1	38	59	50	-34.00	-25.20	0.741176470588235	7.5	2-13,58-47;16-21,43-38	1-1,59-59[UP5];14-15,46-44[AILt]	((((((...((((((((((((.&.))))))))))))-..))))))	CGGUCGCGCAGCCCAGAGGAGA&CCUCCUUUGGGUU-UUUGAUUG	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN16498_c1_g1_50_TPlot.pdf
TRINITY_DN1649_c0_g1:4618	si_s74	TRINITY_DN1649_c0_g1	4606	4627	4618	-25.00	-16.80	0.672	9	4-16,4624-4612;17-21,4610-4606	1-3,4627-4625[UP5];x-x,4611-4611[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GGAAGAGGAAGAGAGAAAACAA&CUAUUUUUUUUCUUUC-CUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1649_c0_g1_4618_TPlot.pdf
TRINITY_DN164_c0_g1:1005	si_s790	TRINITY_DN164_c0_g1	993	1014	1005	-27.80	-19.00	0.683453237410072	5.5	3-13,1012-1002;14-18,1000-996;20-21,994-993	1-2,1014-1013[UP5];x-x,1001-1001[BULt];19-19,995-995[SIL]	((.(((((.(((((((((((..&..)))))))))))-))))).))	GGAAAAAUCACGAGCUUGUUAC&AAAACAAGCUCGU-AUUUUAUC	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN164_c0_g1_1005_TPlot.pdf
TRINITY_DN164_c0_g1:902	si_a127	TRINITY_DN164_c0_g1	891	913	902	-23.10	-15.70	0.67965367965368	8	2-9,912-905;10-19,902-893	1-1,913-913[UP5];x-x,904-903[BULt];20-21,892-891[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	UAAAUUACUAUUCAGCUAUAAGU&UUUUAUAGC--AAUAGUAAUUAA	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN164_c0_g1_902_TPlot.pdf
TRINITY_DN164_c1_g1:616	si_s558	TRINITY_DN164_c1_g1	604	625	616	-28.20	-19.70	0.698581560283688	6.5	1-4,625-622;6-14,620-612;15-20,610-605	5-5,621-621[SIL];x-x,611-611[BULt];21-21,604-604[UP3]	.((((((.(((((((((.((((&)))).)))))))))-)))))).	GUGUCCUGGAGAAUAUUUGUUC&GAAUUAAUAUUUUC-GGGACAA	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN164_c1_g1_616_TPlot.pdf
TRINITY_DN164_c1_g1:617	si_s557	TRINITY_DN164_c1_g1	605	626	617	-28.80	-19.50	0.677083333333333	6	2-5,625-622;7-15,620-612;16-21,610-605	1-1,626-626[UP5];6-6,621-621[SIL];x-x,611-611[BULt]	((((((.(((((((((.((((.&.)))).)))))))))-))))))	UGUCCUGGAGAAUAUUUGUUCG&AGAAUUAAUAUUUUC-GGGACA	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN164_c1_g1_617_TPlot.pdf
TRINITY_DN16508_c0_g1:397	si_a412	TRINITY_DN16508_c0_g1	386	406	397	-18.30	-12.20	0.666666666666667	8	1-14,406-393	15-21,392-386[UP3]	.......((((((((((((((&)))))))))))))).......	AGAUAUAUUGAAUAUAAACAA&UUGUUUAUAUUUAAAUAAAUA	1	0.153639597701765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN16508_c0_g1_397_TPlot.pdf
TRINITY_DN1650_c0_g1:485	si_a124	TRINITY_DN1650_c0_g1	474	495	485	-25.10	-16.70	0.665338645418327	8.5	1-5,495-491;7-9,489-487;10-18,485-477	6-6,490-490[SIL];x-x,486-486[BULt];19-21,476-474[UP3]	...(((((((((.(((.(((((&))))).)))-)))))))))...	AGAGCUAUUGCUAAUAUAGCAA&UUGUUUUAU-AGCAAUAGUAAU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN1650_c0_g1_485_TPlot.pdf
TRINITY_DN1650_c0_g1:489	si_a121	TRINITY_DN1650_c0_g1	477	498	489	-29.30	-21.00	0.716723549488055	7.5	2-8,497-491;10-12,489-487;13-21,485-477	1-1,498-498[UP5];9-9,490-490[SIL];x-x,486-486[BULt]	(((((((((.(((.(((((((.&.))))))).)))-)))))))))	GCUAUUGCUAAUAUAGCAAGUA&AGCUUGUUUUAU-AGCAAUAGU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN1650_c0_g1_489_TPlot.pdf
TRINITY_DN1652_c0_g1:1047	si_a334	TRINITY_DN1652_c0_g1	1036	1056	1047	-30.70	-20.20	0.657980456026059	14	5-15,1052-1042	1-4,1056-1053[UP5];16-21,1041-1036[UP3]	......(((((((((((....&....)))))))))))......	CACUGGGGGACAAGGGAAUGC&UUUAUUCCUUGUCCCGAAAAU	4	0.999956038068356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN1652_c0_g1_1047_TPlot.pdf
TRINITY_DN1652_c0_g1:1049	si_a332	TRINITY_DN1652_c0_g1	1038	1058	1049	-30.60	-20.20	0.660130718954248	16	7-17,1052-1042	1-6,1058-1053[UP5];18-21,1041-1038[UP3]	....(((((((((((......&......)))))))))))....	CUGGGGGACAAGGGAAUGCAU&UUUUUAUUCCUUGUCCCGAAA	3	0.999991195257928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN1652_c0_g1_1049_TPlot.pdf
TRINITY_DN1652_c0_g1:1080	si_a327	TRINITY_DN1652_c0_g1	1068	1089	1080	-28.40	-19.30	0.679577464788732	10.5	2-10,1088-1080;12-20,1077-1069	1-1,1089-1089[UP5];11-11,1079-1078[AILt];21-21,1068-1068[UP3]	.(((((((((..(((((((((.&.)))))))))-.))))))))).	CGGCGGGGAAAGGAGAAGAUCC&UGAUUUUUUU-AUUCCUUGUCC	3	0.999997731878951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1652_c0_g1_1080_TPlot.pdf
TRINITY_DN1652_c0_g1:886	si_a706	TRINITY_DN1652_c0_g1	875	895	886	-30.30	-20.20	0.666666666666667	8	2-12,894-884;14-17,882-879	1-1,895-895[UP5];13-13,883-883[SIL];18-21,878-875[UP3]	....((((.(((((((((((.&.))))))))))).))))....	AACCUAUUAUGGAGUGUGCCG&UGGUACAUUCCAAAAUAAUCG	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a706_TRINITY_DN1652_c0_g1_886_TPlot.pdf
TRINITY_DN1652_c0_g1:888	si_a704	TRINITY_DN1652_c0_g1	877	897	888	-29.30	-20.60	0.703071672354949	9	3-14,895-884;16-19,882-879	1-2,897-896[UP5];15-15,883-883[SIL];20-21,878-877[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	CCUAUUAUGGAGUGUGCCGAC&ACUGGUACAUUCCAAAAUAAU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN1652_c0_g1_888_TPlot.pdf
TRINITY_DN16533_c0_g1:1026	si_a324	TRINITY_DN16533_c0_g1	1014	1035	1026	-27.50	-18.50	0.672727272727273	8.5	1-11,1035-1025;13-19,1022-1016	12-12,1024-1023[AILt];20-21,1015-1014[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	UCGGGAAUACUGAAAAUUAUGG&CCAUGAUUUUU-UUAUUCCUUG	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN16533_c0_g1_1026_TPlot.pdf
TRINITY_DN16533_c0_g1:1231	si_a326	TRINITY_DN16533_c0_g1	1220	1242	1231	-26.20	-17.28	0.659541984732824	10	2-5,1241-1238;8-20,1233-1221	1-1,1242-1242[UP5];6-7,1237-1234[AILt];21-21,1220-1220[UP3]	.(((((((((((((....((((.&.))))--..))))))))))))).	UACAAGGAAUAAAAUGAUAUCAA&AUGAU--UUUUUUAUUCCUUGUC	4	0.999999999971337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN16533_c0_g1_1231_TPlot.pdf
TRINITY_DN1653_c0_g1:5484	si_a149	TRINITY_DN1653_c0_g1	5474	5493	5484	-29.40	-19.20	0.653061224489796	9	1-11,5493-5483;14-17,5482-5479;18-19,5477-5476	12-13,x-x[BULq];x-x,5478-5478[BULt];20-21,5475-5474[UP3]	..((.((((--(((((((((((&)))))))))))..))))-))..	ACUGAACCU--GAGCAACAGCG&CGUUGUUGUUUUAAGGU-CAAU	3	0.999999997674827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1653_c0_g1_5484_TPlot.pdf
TRINITY_DN1653_c0_g1:5486	si_a147	TRINITY_DN1653_c0_g1	5476	5495	5486	-30.40	-20.50	0.674342105263158	6.5	2-13,5494-5483;16-19,5482-5479;20-21,5477-5476	1-1,5495-5495[UP5];14-15,x-x[BULq];x-x,5478-5478[BULt]	((.((((--((((((((((((.&.))))))))))))..))))-))	UGAACCU--GAGCAACAGCGAA&AUCGUUGUUGUUUUAAGGU-CA	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN1653_c0_g1_5486_TPlot.pdf
TRINITY_DN1653_c0_g2:3133	si_s182	TRINITY_DN1653_c0_g2	3123	3141	3133	-32.60	-21.90	0.671779141104294	10.5	1-9,3141-3133;13-19,3131-3125	10-12,3132-3132[AILq];20-21,3124-3123[UP3]	..(((((((.--(((((((((&)))))))))...)))))))..	ACGUGGUCGC--CUCGGGCGU&AUGCCCGAGUAACGAUUAUUU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN1653_c0_g2_3133_TPlot.pdf
TRINITY_DN1653_c0_g2:3371	si_s633	TRINITY_DN1653_c0_g2	3360	3380	3371	-37.90	-27.00	0.712401055408971	7.5	1-12,3380-3369;14-15,3367-3366;17-19,3364-3362	13-13,3368-3368[SIL];16-16,3365-3365[SIL];20-21,3361-3360[UP3]	..(((.((.((((((((((((&)))))))))))).)).)))..	GAGGCCGAGGCCUACGAGGGG&CUUUUCGUAGGCGUUUGCCCU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN1653_c0_g2_3371_TPlot.pdf
TRINITY_DN1653_c0_g2:3478	si_s844	TRINITY_DN1653_c0_g2	3464	3487	3478	-38.90	-26.00	0.668380462724936	10	2-2,3486-3486;5-10,3483-3478;11-19,3475-3467;20-21,3465-3464	1-1,3487-3487[UP5];3-4,3485-3484[SIL];x-x,3477-3476[BULt];x-x,3466-3466[BULt]	((.(((((((((..((((((..(.&.)..))))))--)))))))))-))	GGCAGUCGACUCGGGCUUCUGGCC&UGAAAGAAGC--GAGUCGACU-CC	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s844_TRINITY_DN1653_c0_g2_3478_TPlot.pdf
TRINITY_DN1653_c0_g2:3483	si_s171	TRINITY_DN1653_c0_g2	3472	3491	3483	-41.60	-30.90	0.742788461538461	7	2-7,3490-3485;10-12,3483-3481;14-21,3479-3472	1-1,3491-3491[UP5];8-9,3484-3484[AILq];13-13,3480-3480[SIL]	((((((((.(((.-((((((.&.))))))..))).))))))))	ACUCGGGCUUCUG-GCCCCUC&CAGGGGUAAAGAUGCCCGAGU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s171_TRINITY_DN1653_c0_g2_3483_TPlot.pdf
TRINITY_DN1653_c0_g2:3953	si_a554	TRINITY_DN1653_c0_g2	3942	3962	3953	-34.40	-22.50	0.654069767441861	6.5	1-2,3962-3961;4-16,3959-3947;18-21,3945-3942	3-3,3960-3960[SIL];17-17,3946-3946[SIL]	((((.(((((((((((((.((&)).))))))))))))).))))	UACGCGGAGAUGGAGAAGGAG&CUAUUUCUUUAUCUCCCCGUG	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN1653_c0_g2_3953_TPlot.pdf
TRINITY_DN1653_c0_g2:3954	si_a553	TRINITY_DN1653_c0_g2	3943	3963	3954	-33.70	-23.00	0.682492581602374	6	1-3,3963-3961;5-17,3959-3947;19-21,3945-3943	4-4,3960-3960[SIL];18-18,3946-3946[SIL]	(((.(((((((((((((.(((&))).))))))))))))).)))	ACGCGGAGAUGGAGAAGGAGA&UCUAUUUCUUUAUCUCCCCGU	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN1653_c0_g2_3954_TPlot.pdf
TRINITY_DN1653_c0_g2:3956	si_s85	TRINITY_DN1653_c0_g2	3945	3965	3956	-33.80	-24.40	0.72189349112426	6.5	1-4,3965-3962;6-13,3960-3953;15-21,3951-3945	5-5,3961-3961[SIL];14-14,3952-3952[SIL]	(((((((.((((((((.((((&)))).)))))))).)))))))	GCGGAGAUGGAGAAGGAGAAG&CUUUCCUUUCUUCUUCUUCGC	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1653_c0_g2_3956_TPlot.pdf
TRINITY_DN1653_c0_g2:3958	si_a785	TRINITY_DN1653_c0_g2	3947	3967	3958	-25.90	-20.20	0.77992277992278	6.5	2-7,3966-3961;9-21,3959-3947	1-1,3967-3967[UP5];8-8,3960-3960[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GGAGAUGGAGAAGGAGAAGAA&CUCUUCUAUUUUUCUAUUUUC	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1653_c0_g2_3958_TPlot.pdf
TRINITY_DN1653_c0_g2:4438	si_s808	TRINITY_DN1653_c0_g2	4427	4447	4438	-28.60	-19.80	0.692307692307692	10	3-13,4445-4435;15-19,4433-4429	1-2,4447-4446[UP5];14-14,4434-4434[SIL];20-21,4428-4427[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	CAAGGAGCAGGUGGCGGAGUU&AUCUUCGUUACCUUUUCUUAA	3	0.999993758972638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1653_c0_g2_4438_TPlot.pdf
TRINITY_DN1653_c0_g2:4439	si_s807	TRINITY_DN1653_c0_g2	4428	4448	4439	-28.90	-19.80	0.685121107266436	11	4-14,4445-4435;16-20,4433-4429	1-3,4448-4446[UP5];15-15,4434-4434[SIL];21-21,4428-4428[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	AAGGAGCAGGUGGCGGAGUUC&UAUCUUCGUUACCUUUUCUUA	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1653_c0_g2_4439_TPlot.pdf
TRINITY_DN16540_c0_g2:982	si_s828	TRINITY_DN16540_c0_g2	971	991	982	-21.90	-15.10	0.689497716894977	8	4-13,988-979;15-20,977-972	1-3,991-989[UP5];14-14,978-978[SIL];21-21,971-971[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AUUCAAACUGUUUUUCGUAGA&AUAAUGAAAAACAAUUUGAAA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN16540_c0_g2_982_TPlot.pdf
TRINITY_DN16540_c0_g2:983	si_s827	TRINITY_DN16540_c0_g2	972	992	983	-21.90	-14.90	0.680365296803653	9	5-14,988-979;16-21,977-972	1-4,992-989[UP5];15-15,978-978[SIL]	((((((.((((((((((....&....)))))))))).))))))	UUCAAACUGUUUUUCGUAGAA&AAUAAUGAAAAACAAUUUGAA	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN16540_c0_g2_983_TPlot.pdf
TRINITY_DN16541_c0_g1:113	si_s770	TRINITY_DN16541_c0_g1	98	122	113	-26.60	-17.50	0.657894736842105	13	1-11,122-112;12-19,107-100	x-x,111-108[BULt];20-21,99-98[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	ACUGGCAGUAUGAUGUAGUUAAUUG&CGAUUAAUUAC----UAUUGCUAUA	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN16541_c0_g1_113_TPlot.pdf
TRINITY_DN16541_c0_g1:156	si_a414	TRINITY_DN16541_c0_g1	145	165	156	-18.10	-14.00	0.773480662983425	4	1-9,165-157;11-21,155-145	10-10,156-156[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UAUGUUUAUUUCAAUAUGAAU&GUUUAUAUUUAAAUAAAUAUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN16541_c0_g1_156_TPlot.pdf
TRINITY_DN16541_c0_g1:157	si_a413	TRINITY_DN16541_c0_g1	146	166	157	-18.40	-12.80	0.695652173913044	5.5	2-10,165-157;12-21,155-146	1-1,166-166[UP5];11-11,156-156[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AUGUUUAUUUCAAUAUGAAUG&UGUUUAUAUUUAAAUAAAUAU	2	0.978631982609921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN16541_c0_g1_157_TPlot.pdf
TRINITY_DN16541_c0_g1:191	si_a633	TRINITY_DN16541_c0_g1	180	200	191	-26.40	-17.30	0.65530303030303	8	1-3,200-198;5-12,196-189;15-20,186-181	4-4,197-197[SIL];13-14,188-187[SIL];21-21,180-180[UP3]	.((((((..((((((((.(((&))).))))))))..)))))).	AACUCAAUCGAAUCGAUUUGA&UUAUGUCGAUUUUUUUGAGUA	3	0.999999999977451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN16541_c0_g1_191_TPlot.pdf
TRINITY_DN16541_c0_g1:192	si_a632	TRINITY_DN16541_c0_g1	181	201	192	-26.10	-17.00	0.651340996168582	7.5	2-4,200-198;6-13,196-189;16-21,186-181	1-1,201-201[UP5];5-5,197-197[SIL];14-15,188-187[SIL]	((((((..((((((((.(((.&.))).))))))))..))))))	ACUCAAUCGAAUCGAUUUGAA&AUUAUGUCGAUUUUUUUGAGU	2	0.999999611562096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN16541_c0_g1_192_TPlot.pdf
TRINITY_DN16541_c0_g1:205	si_a61	TRINITY_DN16541_c0_g1	193	213	205	-32.90	-21.90	0.665653495440729	5.5	2-5,212-209;7-10,208-205;11-21,203-193	1-1,213-213[UP5];6-6,x-x[BULq];x-x,204-204[BULt]	(((((((((((.((((-((((.&.)))).))))-)))))))))))	CGAUUUGAAAGCAAGC-AGUCA&CGACUCGCUU-CUUUCAAAUUG	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN16541_c0_g1_205_TPlot.pdf
TRINITY_DN16541_c0_g1:21	si_s497	TRINITY_DN16541_c0_g1	10	31	21	-22.00	-14.60	0.663636363636364	6	1-8,31-24;9-19,22-12	x-x,23-23[BULt];20-21,11-10[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	GUGGUUGUUUUGUCUUGUAUUU&AAAUAUAA-ACAAAACAAUUCU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN16541_c0_g1_21_TPlot.pdf
TRINITY_DN16541_c0_g1:22	si_s496	TRINITY_DN16541_c0_g1	11	32	22	-21.70	-14.60	0.672811059907834	6	2-9,31-24;10-20,22-12	1-1,32-32[UP5];x-x,23-23[BULt];21-21,11-11[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	UGGUUGUUUUGUCUUGUAUUUU&UAAAUAUAA-ACAAAACAAUUC	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN16541_c0_g1_22_TPlot.pdf
TRINITY_DN16541_c0_g1:389	si_s552	TRINITY_DN16541_c0_g1	378	398	389	-21.10	-13.80	0.654028436018957	13.5	8-21,391-378	1-7,398-392[UP5]	((((((((((((((.......&.......))))))))))))))	CGAAGAUAUUAAUUAAUGAAA&AAAAUAGAAUUAAUAUUUUCG	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN16541_c0_g1_389_TPlot.pdf
TRINITY_DN16542_c0_g1:1199	si_s73	TRINITY_DN16542_c0_g1	1187	1208	1199	-24.00	-16.50	0.6875	6	1-8,1208-1201;10-13,1199-1196;14-19,1194-1189	9-9,1200-1200[SIL];x-x,1195-1195[BULt];20-21,1188-1187[UP3]	..((((((.((((.((((((((&)))))))).))))-))))))..	ACAGGAAACGAAACGAAAUAGA&UCUAUUUUUUUUC-UUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN16542_c0_g1_1199_TPlot.pdf
TRINITY_DN16545_c0_g1:46	si_s692	TRINITY_DN16545_c0_g1	35	55	46	-24.20	-17.20	0.710743801652893	8	1-9,55-47;11-18,45-38	10-10,46-46[SIL];19-21,37-35[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUGAAAUCGGCGAAUUAGGCU&AGUUUAAUUAGUCGAUUUAUU	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN16545_c0_g1_46_TPlot.pdf
TRINITY_DN16545_c0_g1:47	si_s691	TRINITY_DN16545_c0_g1	36	56	47	-26.20	-17.60	0.67175572519084	7.5	2-10,55-47;12-19,45-38	1-1,56-56[UP5];11-11,46-46[SIL];20-21,37-36[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UGAAAUCGGCGAAUUAGGCUG&GAGUUUAAUUAGUCGAUUUAU	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN16545_c0_g1_47_TPlot.pdf
TRINITY_DN16545_c0_g1:48	si_s690	TRINITY_DN16545_c0_g1	37	57	48	-26.70	-17.60	0.659176029962547	8.5	3-11,55-47;13-20,45-38	1-2,57-56[UP5];12-12,46-46[SIL];21-21,37-37[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	GAAAUCGGCGAAUUAGGCUGU&UGAGUUUAAUUAGUCGAUUUA	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN16545_c0_g1_48_TPlot.pdf
TRINITY_DN16547_c0_g1:394	si_a325	TRINITY_DN16547_c0_g1	384	403	394	-25.90	-17.10	0.66023166023166	9.5	4-12,400-392;14-21,391-384	1-3,403-401[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	ACAGGGAA-GAAGAAGUCUUC&CAUGAUUUUUUUAUUCCUUGU	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN16547_c0_g1_394_TPlot.pdf
TRINITY_DN1654_c0_g1:1849	si_s633	TRINITY_DN1654_c0_g1	1837	1858	1849	-37.90	-25.10	0.662269129287599	5.5	1-14,1858-1845;15-18,1843-1840	x-x,1844-1844[BULt];19-21,1839-1837[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	AAUGCGAUACGCCUAUGAAAAG&CUUUUCGUAGGCGU-UUGCCCU	2	0.995762828526261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN1654_c0_g1_1849_TPlot.pdf
TRINITY_DN1654_c0_g1:1851	si_s631	TRINITY_DN1654_c0_g1	1839	1860	1851	-36.00	-25.10	0.697222222222222	6.5	3-16,1858-1845;17-20,1843-1840	1-2,1860-1859[UP5];x-x,1844-1844[BULt];21-21,1839-1839[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	UGCGAUACGCCUAUGAAAAGCU&AUCUUUUCGUAGGCGU-UUGCC	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN1654_c0_g1_1851_TPlot.pdf
TRINITY_DN1654_c0_g1:1852	si_s630	TRINITY_DN1654_c0_g1	1840	1861	1852	-35.60	-27.20	0.764044943820225	4.5	1-2,1861-1860;4-17,1858-1845;18-21,1843-1840	3-3,1859-1859[SIL];x-x,1844-1844[BULt]	((((.((((((((((((((.((&)).))))))))))))))-))))	GCGAUACGCCUAUGAAAAGCUC&GAUCUUUUCGUAGGCGU-UUGC	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN1654_c0_g1_1852_TPlot.pdf
TRINITY_DN1654_c0_g1:697	si_s76	TRINITY_DN1654_c0_g1	686	706	697	-23.60	-18.00	0.76271186440678	7	2-18,705-689	1-1,706-706[UP5];19-21,688-686[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUUGAAGGGGAGAGAAAAAAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1654_c0_g1_697_TPlot.pdf
TRINITY_DN16556_c0_g1:2752	si_s90	TRINITY_DN16556_c0_g1	2734	2761	2752	-35.30	-24.80	0.702549575070822	11	1-14,2761-2748;15-19,2740-2736	x-x,2747-2741[BULt];20-21,2735-2734[UP3]	..(((((.......((((((((((((((&))))))))))))))-------)))))..	AGGAAGCAGAAUCUGAAGAGGAAGAAGG&CUUUCUUCUUCUUC-------GCUUCGG	3	0.999998291633412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN16556_c0_g1_2752_TPlot.pdf
TRINITY_DN16556_c0_g1:2753	si_s89	TRINITY_DN16556_c0_g1	2735	2762	2753	-35.30	-28.10	0.796033994334278	10	1-15,2762-2748;16-20,2740-2736	x-x,2747-2741[BULt];21-21,2735-2735[UP3]	.(((((.......(((((((((((((((&)))))))))))))))-------))))).	GGAAGCAGAAUCUGAAGAGGAAGAAGGG&CCUUUCUUCUUCUUC-------GCUUCG	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN16556_c0_g1_2753_TPlot.pdf
TRINITY_DN16556_c0_g1:2754	si_s88	TRINITY_DN16556_c0_g1	2736	2763	2754	-34.80	-27.60	0.793103448275862	10	2-16,2762-2748;17-21,2740-2736	1-1,2763-2763[UP5];x-x,2747-2741[BULt]	(((((.......(((((((((((((((.&.)))))))))))))))-------)))))	GAAGCAGAAUCUGAAGAGGAAGAAGGGG&UCCUUUCUUCUUCUUC-------GCUUC	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN16556_c0_g1_2754_TPlot.pdf
TRINITY_DN16556_c0_g1:2757	si_s85	TRINITY_DN16556_c0_g1	2746	2766	2757	-33.80	-25.80	0.763313609467456	6	1-1,2766-2766;3-20,2764-2747	2-2,2765-2765[SIL];21-21,2746-2746[UP3]	.((((((((((((((((((.(&).)))))))))))))))))).	CUGAAGAGGAAGAAGGGGAUG&CUUUCCUUUCUUCUUCUUCGC	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN16556_c0_g1_2757_TPlot.pdf
TRINITY_DN16556_c0_g1:2758	si_s84	TRINITY_DN16556_c0_g1	2747	2767	2758	-32.30	-27.20	0.842105263157895	5	1-2,2767-2766;4-21,2764-2747	3-3,2765-2765[SIL]	((((((((((((((((((.((&)).))))))))))))))))))	UGAAGAGGAAGAAGGGGAUGA&UCUUUCCUUUCUUCUUCUUCG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN16556_c0_g1_2758_TPlot.pdf
TRINITY_DN1655_c0_g1:4289	si_a500	TRINITY_DN1655_c0_g1	4276	4298	4289	-34.40	-24.40	0.709302325581395	6	1-4,4298-4295;6-17,4293-4282;18-20,4279-4277	5-5,4294-4294[SIL];x-x,4281-4280[BULt];21-21,4276-4276[UP3]	.(((..((((((((((((.((((&)))).))))))))))))--))).	GCCGAUAGGAAGACGAAACACGG&UCGUUUUUCGUCUUCCU--UGGA	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1655_c0_g1_4289_TPlot.pdf
TRINITY_DN1655_c0_g1:4293	si_a496	TRINITY_DN1655_c0_g1	4282	4302	4293	-32.40	-22.20	0.685185185185185	10	5-8,4298-4295;10-21,4293-4282	1-4,4302-4299[UP5];9-9,4294-4294[SIL]	((((((((((((.((((....&....)))).))))))))))))	AGGAAGACGAAACACGGUGUU&UAUGUCGUUUUUCGUCUUCCU	3	0.999999874559078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1655_c0_g1_4293_TPlot.pdf
TRINITY_DN1655_c0_g1:4325	si_s76	TRINITY_DN1655_c0_g1	4313	4334	4325	-23.60	-15.50	0.656779661016949	9.5	4-15,4331-4320;16-19,4318-4315	1-3,4334-4332[UP5];x-x,4319-4319[BULt];20-21,4314-4313[UP3]	..((((.((((((((((((...&...))))))))))))-))))..	AUGAAACGGGAAGAAAAAGCAA&AUUUUUUUUCUUUCC-UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1655_c0_g1_4325_TPlot.pdf
TRINITY_DN1655_c0_g1:4430	si_a129	TRINITY_DN1655_c0_g1	4419	4439	4430	-25.20	-16.40	0.650793650793651	9	1-13,4439-4427	14-21,4426-4419[UP3]	........(((((((((((((&)))))))))))))........	CAAGGAAAACUAUUGCUAUGA&UUAUAGCAAUAGUAAUUAAUC	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN1655_c0_g1_4430_TPlot.pdf
TRINITY_DN1655_c0_g1:4433	si_a126	TRINITY_DN1655_c0_g1	4422	4442	4433	-24.70	-17.70	0.716599190283401	10	1-1,4442-4442;4-16,4439-4427	2-3,4441-4440[SIL];17-21,4426-4422[UP3]	.....(((((((((((((..(&)..))))))))))))).....	GGAAAACUAUUGCUAUGAUUC&GUUUUAUAGCAAUAGUAAUUA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN1655_c0_g1_4433_TPlot.pdf
TRINITY_DN1655_c0_g1:4437	si_a122	TRINITY_DN1655_c0_g1	4426	4446	4437	-29.00	-22.70	0.782758620689655	7	2-5,4445-4442;8-20,4439-4427	1-1,4446-4446[UP5];6-7,4441-4440[SIL];21-21,4426-4426[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AACUAUUGCUAUGAUUCAAGA&GCUUGUUUUAUAGCAAUAGUA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN1655_c0_g1_4437_TPlot.pdf
TRINITY_DN1655_c0_g1:4438	si_a121	TRINITY_DN1655_c0_g1	4427	4447	4438	-29.30	-22.40	0.764505119453925	8	3-6,4445-4442;9-21,4439-4427	1-2,4447-4446[UP5];7-8,4441-4440[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	ACUAUUGCUAUGAUUCAAGAA&AGCUUGUUUUAUAGCAAUAGU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN1655_c0_g1_4438_TPlot.pdf
TRINITY_DN1655_c0_g1:4439	si_a120	TRINITY_DN1655_c0_g1	4428	4448	4439	-30.50	-21.10	0.691803278688525	10	4-7,4445-4442;10-21,4439-4428	1-3,4448-4446[UP5];8-9,4441-4440[SIL]	((((((((((((..((((...&...))))..))))))))))))	CUAUUGCUAUGAUUCAAGAAC&GAGCUUGUUUUAUAGCAAUAG	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN1655_c0_g1_4439_TPlot.pdf
TRINITY_DN16565_c0_g1:1056	si_s809	TRINITY_DN16565_c0_g1	1044	1065	1056	-28.50	-18.80	0.659649122807018	10	1-6,1065-1060;9-12,1057-1054;13-18,1052-1047	7-8,1059-1058[SIL];x-x,1053-1053[BULt];19-21,1046-1044[UP3]	...((((((.((((..((((((&))))))..))))-))))))...	ACAGAGAAGCAGGUUUCGAAGA&UCUUCGUUACCU-UUUCUUAAU	3	0.999999999818578	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN16565_c0_g1_1056_TPlot.pdf
TRINITY_DN16565_c0_g1:1057	si_s808	TRINITY_DN16565_c0_g1	1045	1066	1057	-28.60	-19.80	0.692307692307692	8	1-7,1066-1060;10-13,1057-1054;14-19,1052-1047	8-9,1059-1058[SIL];x-x,1053-1053[BULt];20-21,1046-1045[UP3]	..((((((.((((..(((((((&)))))))..))))-))))))..	CAGAGAAGCAGGUUUCGAAGAU&AUCUUCGUUACCU-UUUCUUAA	4	0.999996071852019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN16565_c0_g1_1057_TPlot.pdf
TRINITY_DN16565_c0_g1:1678	si_a318	TRINITY_DN16565_c0_g1	1667	1686	1678	-22.50	-15.00	0.666666666666667	7	2-9,1685-1678;11-18,1677-1670	1-1,1686-1686[UP5];10-10,x-x[BULq];19-21,1669-1667[UP3]	...((((((((-((((((((.&.)))))))).))))))))...	AAUGAAAGAUC-UGGAUAAAA&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999999903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN16565_c0_g1_1678_TPlot.pdf
TRINITY_DN16565_c0_g1:2095	si_a792	TRINITY_DN16565_c0_g1	2084	2104	2095	-27.60	-18.70	0.677536231884058	6.5	1-12,2104-2093;14-16,2091-2089;18-21,2087-2084	13-13,2092-2092[SIL];17-17,2088-2088[SIL]	((((.(((.((((((((((((&)))))))))))).))).))))	UGGAAUGGUAGAUGGAGAAGU&AUUUUUCUAUUUUCCAAUCCG	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN16565_c0_g1_2095_TPlot.pdf
TRINITY_DN1656_c0_g1:331	si_s80	TRINITY_DN1656_c0_g1	318	340	331	-28.20	-19.60	0.695035460992908	9	2-10,339-331;11-11,329-329;12-21,327-318	1-1,340-340[UP5];x-x,330-330[BULt];x-x,328-328[BULt]	((((((((((.(.(((((((((.&.)))))))))-)-))))))))))	GAAGGAGGAGUGCGAAGGAGAAC&UUUUUCUUUC-C-UUUCUUCUUC	2	0.999999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1656_c0_g1_331_TPlot.pdf
TRINITY_DN16573_c0_g1:554	si_s74	TRINITY_DN16573_c0_g1	543	563	554	-25.00	-18.70	0.748	4	1-12,563-552;14-20,550-544	13-13,551-551[SIL];21-21,543-543[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	UAAAGGAACGAAGAAAAAUGG&CUAUUUUUUUUCUUUCCUUUC	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN16573_c0_g1_554_TPlot.pdf
TRINITY_DN1657_c0_g1:517	si_a899	TRINITY_DN1657_c0_g1	506	528	517	-18.70	-13.90	0.74331550802139	7.5	1-8,528-521;9-19,518-508	x-x,520-519[BULt];20-21,507-506[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	UCUUUAUGUUACUCCUGUUAUUA&UAAUAAUA--AGUAAUAUAAAAA	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1657_c0_g1_517_TPlot.pdf
TRINITY_DN16586_c0_g1:186	si_s800	TRINITY_DN16586_c0_g1	175	195	186	-29.70	-20.02	0.674074074074074	14.5	1-3,195-193;10-20,186-176	4-9,192-187[SIL];21-21,175-175[UP3]	.(((((((((((......(((&)))......))))))))))).	UGGUGGCGGAGAGGGGUGACG&CGUAUUUUAUCUUCGUUACCU	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN16586_c0_g1_186_TPlot.pdf
TRINITY_DN1658_c1_g1:1466	si_a353	TRINITY_DN1658_c1_g1	1455	1475	1466	-24.00	-16.70	0.695833333333333	10.5	3-14,1473-1462;17-21,1459-1455	1-2,1475-1474[UP5];15-16,1461-1460[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	CGGUCUUGGUGGAGUUGGUCU&AUAUUAAUUCUAUUUUGAUCG	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN1658_c1_g1_1466_TPlot.pdf
TRINITY_DN1658_c1_g1:1477	si_a782	TRINITY_DN1658_c1_g1	1462	1486	1477	-26.40	-18.44	0.698484848484849	16	1-11,1486-1476;15-21,1468-1462	12-14,1475-1469[AILt]	(((((((.......(((((((((((&)))))))))))----...)))))))	GGUGGAGUUGGUCUUGGAGGAGUUG&CAACUCUUCUA----UUUUUCUAUU	2	0.997119207794828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1658_c1_g1_1477_TPlot.pdf
TRINITY_DN1658_c1_g1:1478	si_a781	TRINITY_DN1658_c1_g1	1463	1487	1478	-27.40	-18.34	0.669343065693431	15	1-12,1487-1476;16-21,1468-1463	13-15,1475-1469[AILt]	((((((.......((((((((((((&))))))))))))----...))))))	GUGGAGUUGGUCUUGGAGGAGUUGG&UCAACUCUUCUA----UUUUUCUAU	2	0.998987331601569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN1658_c1_g1_1478_TPlot.pdf
TRINITY_DN1658_c1_g1:1508	si_a789	TRINITY_DN1658_c1_g1	1498	1517	1508	-24.80	-16.20	0.653225806451613	8	1-12,1517-1506;16-21,1503-1498	13-15,1505-1504[AILq]	((((((..-((((((((((((&))))))))))))...))))))	AUUGGGCU-UGGAGGAGUAGG&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1658_c1_g1_1508_TPlot.pdf
TRINITY_DN1658_c1_g1:174	si_a286	TRINITY_DN1658_c1_g1	163	183	174	-28.30	-19.60	0.692579505300353	10	1-9,183-175;11-18,173-166	10-10,174-174[SIL];19-21,165-163[UP3]	...((((((((.(((((((((&))))))))).))))))))...	CGGUUUAGGUUGGGGCGGUCU&AGAUCGCUUGGAUUUAAAAAA	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN1658_c1_g1_174_TPlot.pdf
TRINITY_DN1658_c1_g1:175	si_a285	TRINITY_DN1658_c1_g1	164	184	175	-28.30	-20.80	0.734982332155477	9	1-10,184-175;12-19,173-166	11-11,174-174[SIL];20-21,165-164[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GGUUUAGGUUGGGGCGGUCUU&AAGAUCGCUUGGAUUUAAAAA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN1658_c1_g1_175_TPlot.pdf
TRINITY_DN1658_c1_g1:176	si_a284	TRINITY_DN1658_c1_g1	165	185	176	-28.30	-21.10	0.745583038869258	8.5	2-11,184-175;13-20,173-166	1-1,185-185[UP5];12-12,174-174[SIL];21-21,165-165[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	GUUUAGGUUGGGGCGGUCUUG&AAAGAUCGCUUGGAUUUAAAA	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN1658_c1_g1_176_TPlot.pdf
TRINITY_DN1658_c1_g1:177	si_a283	TRINITY_DN1658_c1_g1	166	186	177	-28.30	-20.90	0.738515901060071	8.5	3-12,184-175;14-21,173-166	1-2,186-185[UP5];13-13,174-174[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	UUUAGGUUGGGGCGGUCUUGG&AAAAGAUCGCUUGGAUUUAAA	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN1658_c1_g1_177_TPlot.pdf
TRINITY_DN1658_c1_g1:178	si_a282	TRINITY_DN1658_c1_g1	167	187	178	-30.30	-20.10	0.663366336633663	10	4-13,184-175;15-21,173-167	1-3,187-185[UP5];14-14,174-174[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	UUAGGUUGGGGCGGUCUUGGA&GAAAAGAUCGCUUGGAUUUAA	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN1658_c1_g1_178_TPlot.pdf
TRINITY_DN1658_c1_g1:189	si_a26	TRINITY_DN1658_c1_g1	178	198	189	-28.00	-19.20	0.685714285714286	11.5	3-9,196-190;12-21,187-178	1-2,198-197[UP5];10-11,189-188[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	CGGUCUUGGACAUGGAGGUCU&UUAUUUUUAGUUCUAAGACCG	2	0.827076674066767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN1658_c1_g1_189_TPlot.pdf
TRINITY_DN1658_c1_g1:509	si_a319	TRINITY_DN1658_c1_g1	497	518	509	-22.40	-14.90	0.665178571428572	10.5	4-13,515-506;15-21,503-497	1-3,518-516[UP5];14-14,505-504[AILt]	(((((((..((((((((((...&...))))))))))-.)))))))	GGUGGAAUCGGUCAUGGAUUAG&UUUAUCCAUGAUU-UUUUUAUU	2	0.999999997358815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1658_c1_g1_509_TPlot.pdf
TRINITY_DN1658_c1_g1:691	si_s385	TRINITY_DN1658_c1_g1	680	700	691	-38.60	-25.14	0.651295336787565	10	1-9,700-692;15-21,686-680	10-14,691-687[SIL]	(((((((.....(((((((((&))))))))).....)))))))	CUUGGAGGAAUUGGUGGACAU&GUGUCCGCCUUACAUUCCAAG	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s385_TRINITY_DN1658_c1_g1_691_TPlot.pdf
TRINITY_DN1658_c1_g1:743	si_a785	TRINITY_DN1658_c1_g1	732	752	743	-25.90	-17.20	0.664092664092664	10.5	1-10,752-743;13-17,740-736	11-12,742-741[SIL];18-21,735-732[UP3]	....(((((..((((((((((&))))))))))..)))))....	ACCCAUGGAUUAAUGGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1658_c1_g1_743_TPlot.pdf
TRINITY_DN1658_c1_g1:744	si_a784	TRINITY_DN1658_c1_g1	733	753	744	-24.70	-18.70	0.757085020242915	8.5	1-11,753-743;14-18,740-736	12-13,742-741[SIL];19-21,735-733[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	CCCAUGGAUUAAUGGAGGAGU&ACUCUUCUAUUUUUCUAUUUU	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1658_c1_g1_744_TPlot.pdf
TRINITY_DN1658_c1_g1:745	si_a783	TRINITY_DN1658_c1_g1	734	754	745	-24.70	-19.90	0.805668016194332	6.5	1-12,754-743;15-19,740-736	13-14,742-741[SIL];20-21,735-734[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	CCAUGGAUUAAUGGAGGAGUU&AACUCUUCUAUUUUUCUAUUU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1658_c1_g1_745_TPlot.pdf
TRINITY_DN1658_c1_g1:746	si_a782	TRINITY_DN1658_c1_g1	735	755	746	-26.40	-23.10	0.875	5.5	1-13,755-743;16-20,740-736	14-15,742-741[SIL];21-21,735-735[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	CAUGGAUUAAUGGAGGAGUUG&CAACUCUUCUAUUUUUCUAUU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1658_c1_g1_746_TPlot.pdf
TRINITY_DN1658_c1_g1:747	si_a781	TRINITY_DN1658_c1_g1	736	756	747	-27.40	-23.20	0.846715328467153	5.5	2-14,755-743;17-21,740-736	1-1,756-756[UP5];15-16,742-741[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AUGGAUUAAUGGAGGAGUUGG&UCAACUCUUCUAUUUUUCUAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN1658_c1_g1_747_TPlot.pdf
TRINITY_DN1658_c1_g1:748	si_a780	TRINITY_DN1658_c1_g1	737	757	748	-27.30	-23.50	0.860805860805861	5.5	1-15,757-743;18-21,740-737	16-17,742-741[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UGGAUUAAUGGAGGAGUUGGA&UUCAACUCUUCUAUUUUUCUA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1658_c1_g1_748_TPlot.pdf
TRINITY_DN1658_c1_g1:751	si_a777	TRINITY_DN1658_c1_g1	740	760	751	-27.00	-18.70	0.692592592592593	10.5	4-18,757-743	1-3,760-758[UP5];19-21,742-740[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUUAAUGGAGGAGUUGGACCU&UGAUUCAACUCUUCUAUUUUU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN1658_c1_g1_751_TPlot.pdf
TRINITY_DN1658_c1_g1:752	si_a776	TRINITY_DN1658_c1_g1	741	761	752	-27.10	-18.70	0.690036900369004	11	5-19,757-743	1-4,761-758[UP5];20-21,742-741[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUAAUGGAGGAGUUGGACCUU&UUGAUUCAACUCUUCUAUUUU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN1658_c1_g1_752_TPlot.pdf
TRINITY_DN1658_c1_g1:754	si_a774	TRINITY_DN1658_c1_g1	743	762	754	-29.20	-19.40	0.664383561643836	8	1-2,762-761;5-5,758-758;7-21,757-743	3-4,760-759[SIL];6-6,x-x[BULq]	(((((((((((((((-(..((&))..).)))))))))))))))	AAUGGAGGAGUUGGA-CCUUC&GAUUGAUUCAACUCUUCUAUU	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN1658_c1_g1_754_TPlot.pdf
TRINITY_DN1658_c1_g2:232	si_s384	TRINITY_DN1658_c1_g2	219	241	232	-38.50	-28.50	0.74025974025974	8	1-4,241-238;6-13,236-229;14-20,226-220	5-5,237-237[SIL];x-x,228-227[BULt];21-21,219-219[UP3]	.(((((((..((((((((.((((&)))).))))))))--))))))).	AUGGGGUGCAUGGGGCGGUCACG&CGUGUCCGCCUUA--CAUUCCAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN1658_c1_g2_232_TPlot.pdf
TRINITY_DN16590_c0_g1:510	si_a371	TRINITY_DN16590_c0_g1	499	519	510	-30.30	-20.40	0.673267326732673	7	2-4,518-516;6-19,514-501	1-1,519-519[UP5];5-5,515-515[SIL];20-21,500-499[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AGGAGGUCAUUUUUGGCCCGU&UCGGAUCAAAAAUGAUUUCGA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN16590_c0_g1_510_TPlot.pdf
TRINITY_DN1659_c0_g1:1705	si_s68	TRINITY_DN1659_c0_g1	1694	1716	1705	-23.10	-15.70	0.67965367965368	7	1-5,1716-1712;6-7,1709-1708;9-21,1706-1694	x-x,1711-1710[BULt];8-8,1707-1707[SIL]	(((((((((((((.((..(((((&)))))--)).)))))))))))))	AAGGAAAAGAAAUCGAAAAGUUG&CAACU--UCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1659_c0_g1_1705_TPlot.pdf
TRINITY_DN165_c0_g1:1501	si_a764	TRINITY_DN165_c0_g1	1491	1510	1501	-28.90	-19.00	0.657439446366782	8.5	2-10,1509-1501;13-19,1499-1493	1-1,1510-1510[UP5];11-12,1500-1500[AILq];20-21,1492-1491[UP3]	..(((((((.-(((((((((.&.)))))))))..)))))))..	UCGAAUCAGG-AAAAGCCCAC&UUGGGUUUUUGAUUGAUUCAA	3	0.999999996785422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN165_c0_g1_1501_TPlot.pdf
TRINITY_DN165_c0_g1:1502	si_a763	TRINITY_DN165_c0_g1	1492	1511	1502	-28.80	-19.00	0.659722222222222	8.5	3-11,1509-1501;14-20,1499-1493	1-2,1511-1510[UP5];12-13,1500-1500[AILq];21-21,1492-1492[UP3]	.(((((((.-(((((((((..&..)))))))))..))))))).	CGAAUCAGG-AAAAGCCCACA&UUUGGGUUUUUGAUUGAUUCA	3	0.999999999807219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN165_c0_g1_1502_TPlot.pdf
TRINITY_DN165_c0_g1:3991	si_a639	TRINITY_DN165_c0_g1	3979	4000	3991	-23.60	-16.10	0.682203389830509	8	1-6,4000-3995;8-10,3993-3991;11-19,3989-3981	7-7,3994-3994[SIL];x-x,3990-3990[BULt];20-21,3980-3979[UP3]	..(((((((((.(((.((((((&)))))).)))-)))))))))..	GAAUAUUACUCUAAAUGGAUCG&CGAUUUUUUU-GAGUAAUAUAU	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN165_c0_g1_3991_TPlot.pdf
TRINITY_DN165_c0_g1:3993	si_a637	TRINITY_DN165_c0_g1	3981	4002	3993	-25.80	-20.70	0.802325581395349	6	1-8,4002-3995;10-12,3993-3991;13-21,3989-3981	9-9,3994-3994[SIL];x-x,3990-3990[BULt]	(((((((((.(((.((((((((&)))))))).)))-)))))))))	AUAUUACUCUAAAUGGAUCGAC&GUCGAUUUUUUU-GAGUAAUAU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN165_c0_g1_3993_TPlot.pdf
TRINITY_DN16601_c0_g1:2634	si_s818	TRINITY_DN16601_c0_g1	2625	2643	2634	-23.70	-15.70	0.662447257383966	4	2-12,2642-2632;15-21,2631-2625	1-1,2643-2643[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	UUUUUCA--GUUAAGAAAAGA&CCUUUUCUUAAUAAUGAAAAA	3	0.997062604531715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN16601_c0_g1_2634_TPlot.pdf
TRINITY_DN16607_c0_g1:56	si_s80	TRINITY_DN16607_c0_g1	45	65	56	-28.20	-23.00	0.815602836879433	4.5	1-5,65-61;7-21,59-45	6-6,60-60[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GAAGAAGAGGGGAAAUAAGAA&UUUUUCUUUCCUUUCUUCUUC	3	0.996100152895399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN16607_c0_g1_56_TPlot.pdf
TRINITY_DN16607_c0_g1:57	si_s79	TRINITY_DN16607_c0_g1	46	66	57	-26.20	-20.40	0.778625954198473	4	1-6,66-61;8-21,59-46	7-7,60-60[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	AAGAAGAGGGGAAAUAAGAAA&UUUUUUCUUUCCUUUCUUCUU	4	0.999999926891251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN16607_c0_g1_57_TPlot.pdf
TRINITY_DN1660_c0_g1:1758	si_a80	TRINITY_DN1660_c0_g1	1747	1767	1758	-22.10	-15.00	0.678733031674208	5	2-15,1766-1753;18-20,1750-1748	1-1,1767-1767[UP5];16-17,1752-1751[SIL];21-21,1747-1747[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	GUUUGAUAAUAAUGAAGAACU&UGUUUUUCAUUAUUAAGAAAA	2	0.998668369541685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1660_c0_g1_1758_TPlot.pdf
TRINITY_DN1660_c0_g1:1762	si_a76	TRINITY_DN1660_c0_g1	1751	1771	1762	-21.20	-14.50	0.683962264150943	8	2-3,1770-1769;6-19,1766-1753	1-1,1771-1771[UP5];4-5,1768-1767[SIL];20-21,1752-1751[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	GAUAAUAAUGAAGAACUUUUA&AAAUUGUUUUUCAUUAUUAAG	4	0.999999958128544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1660_c0_g1_1762_TPlot.pdf
TRINITY_DN1660_c0_g1:1763	si_a75	TRINITY_DN1660_c0_g1	1752	1772	1763	-21.30	-14.50	0.68075117370892	9	3-4,1770-1769;7-20,1766-1753	1-2,1772-1771[UP5];5-6,1768-1767[SIL];21-21,1752-1752[UP3]	.((((((((((((((..((..&..))..)))))))))))))).	AUAAUAAUGAAGAACUUUUAC&CAAAUUGUUUUUCAUUAUUAA	3	0.999999998831755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1660_c0_g1_1763_TPlot.pdf
TRINITY_DN1660_c0_g1:2426	si_s79	TRINITY_DN1660_c0_g1	2414	2436	2426	-26.20	-17.80	0.679389312977099	7.5	1-9,2436-2428;10-16,2426-2420;18-21,2417-2414	x-x,2427-2427[BULt];17-17,2419-2418[AILt]	((((..(((((((.(((((((((&)))))))))-)))))))-.))))	GAGAUCGAAAGGAUAAGGAAGGA&UUUUUUCUU-UCCUUUC-UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1660_c0_g1_2426_TPlot.pdf
TRINITY_DN1660_c0_g1:968	si_a62	TRINITY_DN1660_c0_g1	957	983	968	-32.20	-21.80	0.677018633540373	15	1-5,983-979;6-20,972-958	x-x,978-973[BULt];21-21,957-957[UP3]	.(((((((((((((((......(((((&)))))------))))))))))))))).	CUAAUUUGGAAGAAGUAGGAUGGAGUC&GACUC------GCUUCUUUCAAAUUGU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN1660_c0_g1_968_TPlot.pdf
TRINITY_DN16610_c0_g2:334	si_a784	TRINITY_DN16610_c0_g2	324	343	334	-24.70	-19.40	0.785425101214575	3	2-13,342-331;15-21,330-324	1-1,343-343[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	AAAAUAG-AAAAUAGGAGAGA&ACUCUUCUAUUUUUCUAUUUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN16610_c0_g2_334_TPlot.pdf
TRINITY_DN16612_c0_g1:1500	si_s888	TRINITY_DN16612_c0_g1	1487	1509	1500	-26.80	-17.70	0.66044776119403	12	5-13,1505-1497;14-21,1494-1487	1-4,1509-1506[UP5];x-x,1496-1495[BULt]	((((((((..(((((((((....&....)))))))))--))))))))	AGGAGGAAGUGCCUGUUUGGGCU&AAAAUAAAUAGGC--UUUCUCUU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN16612_c0_g1_1500_TPlot.pdf
TRINITY_DN16612_c0_g1:1858	si_a776	TRINITY_DN16612_c0_g1	1847	1869	1858	-27.10	-18.00	0.664206642066421	11	1-4,1869-1866;5-16,1863-1852	x-x,1865-1864[BULt];17-21,1851-1847[UP3]	.....((((((((((((..((((&))))--)))))))))))).....	CACAAGGAGGAGUUGGAAAUCAA&UUGA--UUCAACUCUUCUAUUUU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN16612_c0_g1_1858_TPlot.pdf
TRINITY_DN16612_c0_g1:1859	si_a775	TRINITY_DN16612_c0_g1	1848	1870	1859	-27.20	-18.00	0.661764705882353	11	2-5,1869-1866;6-17,1863-1852	1-1,1870-1870[UP5];x-x,1865-1864[BULt];18-21,1851-1848[UP3]	....((((((((((((..((((.&.))))--))))))))))))....	ACAAGGAGGAGUUGGAAAUCAAG&AUUGA--UUCAACUCUUCUAUUU	4	0.999911308480448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN16612_c0_g1_1859_TPlot.pdf
TRINITY_DN16612_c0_g1:1864	si_a768	TRINITY_DN16612_c0_g1	1855	1873	1864	-28.40	-19.50	0.686619718309859	7	1-10,1873-1864;13-21,1863-1855	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	GGAGUUGGA--AAUCAAGGAC&GUUUUUGAUUGAUUCAACUCU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN16612_c0_g1_1864_TPlot.pdf
TRINITY_DN16612_c0_g1:1866	si_a766	TRINITY_DN16612_c0_g1	1857	1875	1866	-30.50	-20.10	0.659016393442623	5	1-12,1875-1864;15-21,1863-1857	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGUUGGA--AAUCAAGGACCU&GGGUUUUUGAUUGAUUCAACU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN16612_c0_g1_1866_TPlot.pdf
TRINITY_DN16612_c0_g1:1870	si_a762	TRINITY_DN16612_c0_g1	1856	1879	1870	-29.70	-20.70	0.696969696969697	9	1-16,1879-1864;17-21,1860-1856	x-x,1863-1861[BULt]	(((((...((((((((((((((((&))))))))))))))))---)))))	GAGUUGGAAAUCAAGGACCUAGGG&CUUUGGGUUUUUGAUU---GAUUC	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN16612_c0_g1_1870_TPlot.pdf
TRINITY_DN16612_c0_g1:3454	si_s82	TRINITY_DN16612_c0_g1	3443	3464	3454	-28.90	-19.00	0.657439446366782	7.5	2-8,3463-3457;9-17,3455-3447	1-1,3464-3464[UP5];x-x,3456-3456[BULt];18-21,3446-3443[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	UUAUGGAAGAAAGUGAAAGAAC&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN16612_c0_g1_3454_TPlot.pdf
TRINITY_DN16612_c0_g1:4710	si_s293	TRINITY_DN16612_c0_g1	4699	4719	4710	-34.30	-23.10	0.673469387755102	5.5	1-2,4719-4718;4-20,4716-4700	3-3,4717-4717[SIL];21-21,4699-4699[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	AUUGCAAUUUUAAUCGACCAG&CUAGUCGAUUGGAAUUGCGAA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN16612_c0_g1_4710_TPlot.pdf
TRINITY_DN16612_c0_g1:4900	si_a404	TRINITY_DN16612_c0_g1	4889	4909	4900	-21.70	-16.20	0.746543778801843	7	1-14,4909-4896	15-21,4895-4889[UP3]	.......((((((((((((((&)))))))))))))).......	CAAUGCAAAACAAAACAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN16612_c0_g1_4900_TPlot.pdf
TRINITY_DN16612_c0_g1:4901	si_a403	TRINITY_DN16612_c0_g1	4890	4910	4901	-22.00	-16.30	0.740909090909091	7	2-15,4909-4896	1-1,4910-4910[UP5];16-21,4895-4890[UP3]	......((((((((((((((.&.))))))))))))))......	AAUGCAAAACAAAACAAUUCA&AGAAUUGUUUUGUUUAUAUUU	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN16612_c0_g1_4901_TPlot.pdf
TRINITY_DN16612_c0_g1:4902	si_a402	TRINITY_DN16612_c0_g1	4891	4911	4902	-22.40	-16.30	0.727678571428572	8	3-16,4909-4896	1-2,4911-4910[UP5];17-21,4895-4891[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUGCAAAACAAAACAAUUCAA&UAGAAUUGUUUUGUUUAUAUU	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN16612_c0_g1_4902_TPlot.pdf
TRINITY_DN16612_c0_g1:4906	si_a398	TRINITY_DN16612_c0_g1	4895	4915	4906	-22.40	-16.30	0.727678571428572	12	7-20,4909-4896	1-6,4915-4910[UP5];21-21,4895-4895[UP3]	.((((((((((((((......&......)))))))))))))).	AAAACAAAACAAUUCAAGUAU&AAUAUAGAAUUGUUUUGUUUA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN16612_c0_g1_4906_TPlot.pdf
TRINITY_DN16612_c0_g1:4907	si_a397	TRINITY_DN16612_c0_g1	4896	4916	4907	-24.00	-16.00	0.666666666666667	13	8-21,4909-4896	1-7,4916-4910[UP5]	((((((((((((((.......&.......))))))))))))))	AAACAAAACAAUUCAAGUAUA&GAAUAUAGAAUUGUUUUGUUU	3	0.999956421867691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN16612_c0_g1_4907_TPlot.pdf
TRINITY_DN16612_c0_g1:5345	si_s92	TRINITY_DN16612_c0_g1	5330	5354	5345	-34.90	-25.80	0.739255014326648	6.5	1-15,5354-5340;16-21,5335-5330	x-x,5339-5336[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	GUUUGAAGAAAGCGAGGAAGAAGAA&UUCUUCUUCUUCGCU----UCGGAU	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN16612_c0_g1_5345_TPlot.pdf
TRINITY_DN16612_c0_g1:5346	si_s91	TRINITY_DN16612_c0_g1	5335	5355	5346	-34.70	-24.80	0.714697406340058	5.5	1-17,5355-5339	18-21,5338-5335[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAGAAAGCGAGGAAGAAGAAG&UUUCUUCUUCUUCGCUUCGGA	4	0.999956038068356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN16612_c0_g1_5346_TPlot.pdf
TRINITY_DN16612_c0_g1:5348	si_s89	TRINITY_DN16612_c0_g1	5337	5357	5348	-35.30	-25.00	0.708215297450425	6.5	3-19,5355-5339	1-2,5357-5356[UP5];20-21,5338-5337[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAAAGCGAGGAAGAAGAAGUU&CCUUUCUUCUUCUUCGCUUCG	2	0.999621165911964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN16612_c0_g1_5348_TPlot.pdf
TRINITY_DN16612_c0_g1:5351	si_s86	TRINITY_DN16612_c0_g1	5340	5360	5351	-32.90	-24.10	0.732522796352584	10.5	6-21,5355-5340	1-5,5360-5356[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGCGAGGAAGAAGAAGUUGAU&UUUCCUUUCUUCUUCUUCGCU	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN16612_c0_g1_5351_TPlot.pdf
TRINITY_DN16612_c0_g1:5352	si_s85	TRINITY_DN16612_c0_g1	5341	5361	5352	-33.80	-22.80	0.674556213017752	12.5	7-21,5355-5341	1-6,5361-5356[UP5]	(((((((((((((((......&......)))))))))))))))	GCGAGGAAGAAGAAGUUGAUU&CUUUCCUUUCUUCUUCUUCGC	3	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN16612_c0_g1_5352_TPlot.pdf
TRINITY_DN16612_c0_g1:5557	si_s774	TRINITY_DN16612_c0_g1	5546	5566	5557	-24.70	-17.10	0.692307692307692	9	1-16,5566-5551	17-21,5550-5546[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUUAAAUGGUAGUAGUGAUUG&UAAUUACUAUUGCUAUAAAAC	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN16612_c0_g1_5557_TPlot.pdf
TRINITY_DN16612_c0_g1:5560	si_s771	TRINITY_DN16612_c0_g1	5549	5569	5560	-25.20	-17.10	0.678571428571429	10.5	4-19,5566-5551	1-3,5569-5567[UP5];20-21,5550-5549[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAUGGUAGUAGUGAUUGUAA&GAUUAAUUACUAUUGCUAUAA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN16612_c0_g1_5560_TPlot.pdf
TRINITY_DN16612_c0_g1:6399	si_s513	TRINITY_DN16612_c0_g1	6387	6407	6399	-24.90	-16.90	0.678714859437751	4	1-5,6407-6403;7-14,6402-6395;15-21,6393-6387	6-6,x-x[BULq];x-x,6394-6394[BULt]	(((((((.((((((((-(((((&))))).))))))))-)))))))	UUCGAAUAUAAGAAUA-AGAGU&AUUCUAUAUUCUUA-AUUCGAA	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN16612_c0_g1_6399_TPlot.pdf
TRINITY_DN16612_c0_g1:6400	si_s512	TRINITY_DN16612_c0_g1	6388	6408	6400	-24.80	-17.20	0.693548387096774	4	1-6,6408-6403;8-15,6402-6395;16-21,6393-6388	7-7,x-x[BULq];x-x,6394-6394[BULt]	((((((.((((((((-((((((&)))))).))))))))-))))))	UCGAAUAUAAGAAUA-AGAGUU&AAUUCUAUAUUCUUA-AUUCGA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN16612_c0_g1_6400_TPlot.pdf
TRINITY_DN16613_c0_g1:2352	si_s801	TRINITY_DN16613_c0_g1	2333	2361	2352	-28.20	-18.50	0.656028368794326	16.5	1-10,2361-2352;11-15,2346-2342;16-21,2338-2333	x-x,2351-2347[BULt];x-x,2341-2339[BULt]	((((((...(((((.....((((((((((&))))))))))-----)))))---))))))	AAGGUAAAGGCGAAUUCACGAUGGAGUAC&GUAUUUUAUC-----UUCGU---UACCUU	4	0.999999918942414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN16613_c0_g1_2352_TPlot.pdf
TRINITY_DN16613_c0_g1:2420	si_a322	TRINITY_DN16613_c0_g1	2408	2430	2420	-27.00	-17.60	0.651851851851852	8	3-7,2428-2424;8-14,2422-2416;15-20,2414-2409	1-2,2430-2429[UP5];x-x,2423-2423[BULt];x-x,2415-2415[BULt];21-21,2408-2408[UP3]	.((((((.(((((((.(((((..&..)))))-)))))))-)))))).	UGGAGUACGAAAAAUCCAUGGGA&AUCCAUG-AUUUUUU-UAUUCCU	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN16613_c0_g1_2420_TPlot.pdf
TRINITY_DN16615_c1_g1:27	si_s398	TRINITY_DN16615_c1_g1	13	36	27	-32.10	-21.40	0.666666666666667	12	2-10,35-27;11-17,23-17	1-1,36-36[UP5];x-x,26-24[BULt];18-21,16-13[UP3]	....(((((((...(((((((((.&.)))))))))---)))))))....	AAAGUUCGUCUGCCUCCUUGGGAC&AUUCCAAGGA---AGACGAAAAAC	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s398_TRINITY_DN16615_c1_g1_27_TPlot.pdf
TRINITY_DN16618_c1_g1:429	si_a142	TRINITY_DN16618_c1_g1	418	438	429	-23.50	-16.70	0.71063829787234	13	6-19,433-420	1-5,438-434[UP5];20-21,419-418[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAGAAAUAACAGCGAUGCCUU&AAUUAAUCGUUGUUGUUUUAA	4	0.999975336164604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN16618_c1_g1_429_TPlot.pdf
TRINITY_DN16618_c1_g1:430	si_a141	TRINITY_DN16618_c1_g1	419	439	430	-23.80	-16.70	0.701680672268908	14	7-20,433-420	1-6,439-434[UP5];21-21,419-419[UP3]	.((((((((((((((......&......)))))))))))))).	AGAAAUAACAGCGAUGCCUUC&UAAUUAAUCGUUGUUGUUUUA	2	0.998853114148591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN16618_c1_g1_430_TPlot.pdf
TRINITY_DN1662_c0_g1:737	si_a23	TRINITY_DN1662_c0_g1	726	746	737	-22.80	-15.20	0.666666666666667	11	3-17,744-730	1-2,746-745[UP5];18-21,729-726[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGGAGGAGCUAAAGGUGAAGA&UAUUUAUUUUUAGUUCUAAGA	2	0.999625851716806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1662_c0_g1_737_TPlot.pdf
TRINITY_DN1662_c0_g1:797	si_a361	TRINITY_DN1662_c0_g1	786	806	797	-29.00	-19.20	0.662068965517241	8	1-4,806-803;7-11,800-796;13-19,794-788	5-6,802-801[SIL];12-12,795-795[SIL];20-21,787-786[UP3]	..(((((((.(((((..((((&))))..))))).)))))))..	GAUUGAUCCUAUCAAUUUAGA&UCUAUUUUGAUCGGAUCAAAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN1662_c0_g1_797_TPlot.pdf
TRINITY_DN1662_c0_g1:798	si_a360	TRINITY_DN1662_c0_g1	787	807	798	-29.10	-19.90	0.683848797250859	6	1-5,807-803;8-12,800-796;14-20,794-788	6-7,802-801[SIL];13-13,795-795[SIL];21-21,787-787[UP3]	.(((((((.(((((..(((((&)))))..))))).))))))).	AUUGAUCCUAUCAAUUUAGAA&UUCUAUUUUGAUCGGAUCAAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN1662_c0_g1_798_TPlot.pdf
TRINITY_DN1662_c0_g1:799	si_a359	TRINITY_DN1662_c0_g1	788	808	799	-29.20	-20.70	0.708904109589041	5	1-6,808-803;9-13,800-796;15-21,794-788	7-8,802-801[SIL];14-14,795-795[SIL]	(((((((.(((((..((((((&))))))..))))).)))))))	UUGAUCCUAUCAAUUUAGAAU&AUUCUAUUUUGAUCGGAUCAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN1662_c0_g1_799_TPlot.pdf
TRINITY_DN1662_c0_g1:800	si_a358	TRINITY_DN1662_c0_g1	789	809	800	-29.10	-20.10	0.690721649484536	6	2-7,808-803;10-14,800-796;16-21,794-789	1-1,809-809[UP5];8-9,802-801[SIL];15-15,795-795[SIL]	((((((.(((((..((((((.&.))))))..))))).))))))	UGAUCCUAUCAAUUUAGAAUC&AAUUCUAUUUUGAUCGGAUCA	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN1662_c0_g1_800_TPlot.pdf
TRINITY_DN1663_c0_g1:1303	si_a463	TRINITY_DN1663_c0_g1	1292	1312	1303	-19.70	-14.10	0.715736040609137	6.5	2-18,1311-1295	1-1,1312-1312[UP5];19-21,1294-1292[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UCUGUUAUGUAUUGUAUAUAU&UUAUAUAUAAUAUGUAAUUAU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1663_c0_g1_1303_TPlot.pdf
TRINITY_DN1663_c0_g2:1441	si_a326	TRINITY_DN1663_c0_g2	1426	1450	1441	-26.20	-17.30	0.66030534351145	9.5	2-5,1449-1446;7-13,1444-1438;14-21,1433-1426	1-1,1450-1450[UP5];6-6,1445-1445[SIL];x-x,1437-1434[BULt]	((((((((....(((((((.((((.&.)))).)))))))----))))))))	GGCAAGGAAAAGAUGAAAACGUCAA&AUGAUUUUUUUAU----UCCUUGUC	4	0.999999999901096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1663_c0_g2_1441_TPlot.pdf
TRINITY_DN1663_c0_g2:1588	si_a405	TRINITY_DN1663_c0_g2	1577	1597	1588	-19.80	-15.60	0.787878787878788	7	2-6,1596-1592;8-20,1590-1578	1-1,1597-1597[UP5];7-7,1591-1591[SIL];21-21,1577-1577[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	CUAAAUGUGGACAACACGAUA&AAUUGUUUUGUUUAUAUUUAA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1663_c0_g2_1588_TPlot.pdf
TRINITY_DN1663_c0_g2:1589	si_a404	TRINITY_DN1663_c0_g2	1578	1598	1589	-21.70	-15.30	0.705069124423963	7.5	3-7,1596-1592;9-21,1590-1578	1-2,1598-1597[UP5];8-8,1591-1591[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	UAAAUGUGGACAACACGAUAC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999681681481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1663_c0_g2_1589_TPlot.pdf
TRINITY_DN1663_c0_g2:1708	si_a463	TRINITY_DN1663_c0_g2	1697	1717	1708	-19.70	-14.10	0.715736040609137	6.5	2-18,1716-1700	1-1,1717-1717[UP5];19-21,1699-1697[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UCUGUUAUGUAUUGUAUAUAU&UUAUAUAUAAUAUGUAAUUAU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN1663_c0_g2_1708_TPlot.pdf
TRINITY_DN1663_c0_g2:1710	si_a461	TRINITY_DN1663_c0_g2	1699	1719	1710	-21.50	-14.10	0.655813953488372	8.5	4-20,1716-1700	1-3,1719-1717[UP5];21-21,1699-1699[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGUUAUGUAUUGUAUAUAUUG&UGUUAUAUAUAAUAUGUAAUU	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN1663_c0_g2_1710_TPlot.pdf
TRINITY_DN1663_c0_g2:840	si_a146	TRINITY_DN1663_c0_g2	829	849	840	-29.70	-19.80	0.666666666666667	7	2-13,848-837;16-20,834-830	1-1,849-849[UP5];14-15,836-835[SIL];21-21,829-829[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	CACUUUUCGGCAGCAACGAUG&AAUCGUUGUUGUUUUAAGGUC	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN1663_c0_g2_840_TPlot.pdf
TRINITY_DN1663_c0_g2:844	si_a142	TRINITY_DN1663_c0_g2	833	853	844	-23.50	-16.00	0.680851063829787	9.5	2-4,852-850;6-17,848-837	1-1,853-853[UP5];5-5,849-849[SIL];18-21,836-833[UP3]	....((((((((((((.(((.&.))).))))))))))))....	UUUCGGCAGCAACGAUGAGUG&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999733605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1663_c0_g2_844_TPlot.pdf
TRINITY_DN16640_c0_g1:178	si_a66	TRINITY_DN16640_c0_g1	169	187	178	-26.70	-18.00	0.674157303370786	5.5	2-11,186-177;15-21,175-169	1-1,187-187[UP5];12-14,176-176[AILq]	(((((((.--((((((((((.&.))))))))))...)))))))	AAAAGCAC--UGAAAGAAGCU&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999908848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN16640_c0_g1_178_TPlot.pdf
TRINITY_DN16653_c0_g1:131	si_s500	TRINITY_DN16653_c0_g1	120	140	131	-22.80	-16.50	0.723684210526316	11.5	6-19,135-122	1-5,140-136[UP5];20-21,121-120[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUUGGAAUUGUUUUGUGGUGA&UAUAAACAAAACAAUUCUAUA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN16653_c0_g1_131_TPlot.pdf
TRINITY_DN16655_c0_g1:395	si_s72	TRINITY_DN16655_c0_g1	384	404	395	-24.10	-16.00	0.663900414937759	9.5	1-8,404-397;10-11,395-394;13-20,392-385	9-9,396-396[SIL];12-12,393-393[SIL];21-21,384-384[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	CAGGAGGGGUAAUGAGUGGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN16655_c0_g1_395_TPlot.pdf
TRINITY_DN1665_c0_g2:3796	si_s569	TRINITY_DN1665_c0_g2	3785	3804	3796	-30.60	-21.80	0.712418300653595	8.5	2-6,3803-3799;8-16,3798-3790	1-1,3804-3804[UP5];7-7,x-x[BULq];17-21,3789-3785[UP3]	.....(((((((((-(((((.&.))))).))))))))).....	UUAUCUGUUCCUUG-CCCGAU&UUCGGGACAAGGAAUAAAAAA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN1665_c0_g2_3796_TPlot.pdf
TRINITY_DN1665_c0_g2:4282	si_s521	TRINITY_DN1665_c0_g2	4271	4291	4282	-23.90	-16.70	0.698744769874477	9	1-5,4291-4287;8-20,4284-4272	6-7,4286-4285[SIL];21-21,4271-4271[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	UGAAUGGUUUUGAGGGAGGAA&UUCUUAAUUCGAAAUCAUUUU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN1665_c0_g2_4282_TPlot.pdf
TRINITY_DN16660_c0_g5:3176	si_s73	TRINITY_DN16660_c0_g5	3165	3185	3176	-24.00	-18.60	0.775	6	1-3,3185-3183;5-18,3181-3168	4-4,3182-3182[SIL];19-21,3167-3165[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UUCGGAAAGAAAAAGAAGAGA&UCUAUUUUUUUUCUUUCCUUU	2	0.999267294216212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN16660_c0_g5_3176_TPlot.pdf
TRINITY_DN16663_c0_g1:1399	si_s68	TRINITY_DN16663_c0_g1	1388	1408	1399	-23.10	-16.10	0.696969696969697	8.5	3-11,1406-1398;13-19,1396-1390	1-2,1408-1407[UP5];12-12,1397-1397[SIL];20-21,1389-1388[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	UUGGAAAAAUAGUAGAAGUGU&CAACUUCUAUUUUUUUUCUUU	4	0.99999999999834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN16663_c0_g1_1399_TPlot.pdf
TRINITY_DN16663_c0_g1:404	si_a141	TRINITY_DN16663_c0_g1	393	413	404	-23.80	-16.70	0.701680672268908	15.5	8-20,406-394	1-7,413-407[UP5];21-21,393-393[UP3]	.(((((((((((((.......&.......))))))))))))).	GGGAACAGCAACGACUGGCAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN16663_c0_g1_404_TPlot.pdf
TRINITY_DN16664_c0_g1:1732	si_a471	TRINITY_DN16664_c0_g1	1716	1741	1732	-21.10	-13.80	0.654028436018957	17	3-10,1739-1732;11-20,1726-1717	1-2,1741-1740[UP5];x-x,1731-1727[BULt];21-21,1716-1716[UP3]	.((((((((((.....((((((((..&..))))))))-----)))))))))).	UUAUGACAGUGCUUUUGUUACAUAAU&AAUAUGUAAU-----UAUUGUUAUAU	4	0.999999992606168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN16664_c0_g1_1732_TPlot.pdf
TRINITY_DN1666_c0_g1:1120	si_a318	TRINITY_DN1666_c0_g1	1109	1129	1120	-22.50	-15.50	0.688888888888889	11	5-19,1125-1111	1-4,1129-1126[UP5];20-21,1110-1109[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCGAAGAAAUUAUGGAUCUGG&AUUUAUCCAUGAUUUUUUUAU	4	0.999999994685875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1666_c0_g1_1120_TPlot.pdf
TRINITY_DN16672_c0_g2:1452	si_s612	TRINITY_DN16672_c0_g2	1442	1461	1452	-28.20	-18.50	0.656028368794326	7.5	1-10,1461-1452;12-14,1451-1449;16-21,1447-1442	11-11,x-x[BULq];15-15,1448-1448[SIL]	((((((.(((-((((((((((&)))))))))).))).))))))	AUCGCUGGGG-UUGAAAGGGG&UCUUUUUUAAAUCCAAGCGAU	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN16672_c0_g2_1452_TPlot.pdf
TRINITY_DN16677_c0_g1:500	si_a664	TRINITY_DN16677_c0_g1	489	509	500	-29.60	-19.30	0.652027027027027	10.5	5-12,505-498;14-19,496-491	1-4,509-506[UP5];13-13,497-497[SIL];20-21,490-489[UP3]	..((((((.((((((((....&....)))))))).))))))..	AGAAGGAGACAAUAGGCUUAG&AAAUGCCUAUUGAUUCCUUAU	2	0.999320017310017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN16677_c0_g1_500_TPlot.pdf
TRINITY_DN16683_c0_g1:226	si_s898	TRINITY_DN16683_c0_g1	215	235	226	-30.70	-20.50	0.667752442996743	8	2-14,234-222;16-18,220-218	1-1,235-235[UP5];15-15,221-221[SIL];19-21,217-215[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	CAGGAAUUUGAAGAGGGAGUG&GGCUUUCUCUUCAAUUUCAAU	4	0.999999891781442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN16683_c0_g1_226_TPlot.pdf
TRINITY_DN16684_c1_g1:569	si_a520	TRINITY_DN16684_c1_g1	557	578	569	-40.00	-26.70	0.6675	9	3-12,576-567;13-20,565-558	1-2,578-577[UP5];x-x,566-566[BULt];21-21,557-557[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	UUUGUGUGUCCCGCUUUGCAAA&AAUGUAAGGCGG-ACACGCGAG	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a520_TRINITY_DN16684_c1_g1_569_TPlot.pdf
TRINITY_DN16684_c1_g1:758	si_s3	TRINITY_DN16684_c1_g1	747	767	758	-21.20	-14.90	0.702830188679245	8.5	1-16,767-752	17-21,751-747[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUUUUAGUAAGUGAUAUGGA&UUUAUAUUACUUAUUAUUACU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN16684_c1_g1_758_TPlot.pdf
TRINITY_DN16685_c0_g1:56	si_s766	TRINITY_DN16685_c0_g1	45	67	56	-28.20	-19.84	0.70354609929078	14.5	2-9,66-59;14-21,52-45	1-1,67-67[UP5];10-13,58-53[AILt]	((((((((......((((((((.&.))))))))--....))))))))	GCGAUAGUUAGCCGGGUCGUUGG&ACAACGAUU--AAUUACUAUUGC	1	0.00442530497859384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s766_TRINITY_DN16685_c0_g1_56_TPlot.pdf
TRINITY_DN1668_c0_g1:3753	si_s286	TRINITY_DN1668_c0_g1	3742	3769	3753	-35.20	-22.90	0.650568181818182	24.5	5-9,3765-3761;10-19,3753-3744	1-4,3769-3766[UP5];x-x,3760-3754[BULt];20-21,3743-3742[UP3]	..((((((((((.......(((((....&....)))))-------))))))))))..	AACCAGUCGACUAAGACUGGGGCGGUGC&AAUACGCCU-------AGUCGAUUGGAA	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN1668_c0_g1_3753_TPlot.pdf
TRINITY_DN16696_c0_g1:2271	si_a633	TRINITY_DN16696_c0_g1	2260	2279	2271	-26.40	-17.40	0.659090909090909	11.5	4-8,2276-2272;10-20,2271-2261	1-3,2279-2277[UP5];9-9,x-x[BULq];21-21,2260-2260[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	AACUCGAGGGAG-CGACAGAG&UUAUGUCGAUUUUUUUGAGUA	4	0.999999999945646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN16696_c0_g1_2271_TPlot.pdf
TRINITY_DN16696_c0_g1:262	si_s626	TRINITY_DN16696_c0_g1	251	271	262	-36.10	-24.90	0.689750692520776	10	3-8,269-264;11-18,261-254;20-21,252-251	1-2,271-270[UP5];9-10,263-262[SIL];19-19,253-253[SIL]	((.((((((((..((((((..&..))))))..)))))))).))	GCACCUGCGAGCUGAUCGCAC&AAGCGAUCUUUUCGUAGGCGU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN16696_c0_g1_262_TPlot.pdf
TRINITY_DN166_c0_g1:1878	si_s796	TRINITY_DN166_c0_g1	1866	1891	1878	-30.30	-19.90	0.656765676567657	14	2-7,1890-1885;8-12,1880-1876;14-21,1873-1866	1-1,1891-1891[UP5];x-x,1884-1881[BULt];13-13,1875-1874[AILt]	((((((((..(((((....((((((.&.))))))----)))))-.))))))))	GACGAGGAGGAAAGUGCGGACGAGCG&AGCUCGU----AUUUU-AUCUUCGUU	2	0.999932839608669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN166_c0_g1_1878_TPlot.pdf
TRINITY_DN166_c0_g1:2170	si_a402	TRINITY_DN166_c0_g1	2159	2179	2170	-22.40	-15.60	0.696428571428572	11.5	3-16,2177-2164	1-2,2179-2178[UP5];17-21,2163-2159[UP3]	.....((((((((((((((..&..)))))))))))))).....	AACAAAGACAAGGCGAUUCGA&UAGAAUUGUUUUGUUUAUAUU	4	0.999997928537389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN166_c0_g1_2170_TPlot.pdf
TRINITY_DN166_c0_g1:2171	si_a401	TRINITY_DN166_c0_g1	2160	2180	2171	-22.60	-15.60	0.690265486725664	12.5	4-17,2177-2164	1-3,2180-2178[UP5];18-21,2163-2160[UP3]	....((((((((((((((...&...))))))))))))))....	ACAAAGACAAGGCGAUUCGAG&AUAGAAUUGUUUUGUUUAUAU	2	0.999560141918521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN166_c0_g1_2171_TPlot.pdf
TRINITY_DN166_c0_g1:2394	si_s378	TRINITY_DN166_c0_g1	2383	2404	2394	-43.80	-29.40	0.671232876712329	9.5	1-6,2404-2399;7-7,2397-2397;9-19,2395-2385	x-x,2398-2398[BULt];8-8,2396-2396[SIL];20-21,2384-2383[UP3]	..(((((((((((.(.((((((&))))))-).)))))))))))..	CAUGGGGUGGACGGGUCGGGCG&CGCUCG-CGUGUCCGCCUUACA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN166_c0_g1_2394_TPlot.pdf
TRINITY_DN16718_c0_g1:484	si_a352	TRINITY_DN16718_c0_g1	476	493	484	-22.50	-15.60	0.693333333333333	5.5	1-12,493-482;16-21,481-476	13-15,x-x[BULq]	((((((---((((((((((((&))))))))))))...))))))	GAUCAG---GGAGUUAAUAUU&AAUAUUAAUUCUAUUUUGAUC	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN16718_c0_g1_484_TPlot.pdf
TRINITY_DN16718_c0_g1:487	si_a666	TRINITY_DN16718_c0_g1	476	499	487	-31.60	-20.60	0.651898734177215	10.5	1-7,499-493;8-17,489-480;20-21,477-476	x-x,492-490[BULt];18-19,479-478[SIL]	((..((((((((((...(((((((&)))))))---))))))))))..))	GAUCAGGGAGUUAAUAUUAGGCAU&AUGCCUA---UUGAUUCCUUAUUC	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN16718_c0_g1_487_TPlot.pdf
TRINITY_DN16718_c0_g1:489	si_a664	TRINITY_DN16718_c0_g1	478	501	489	-29.60	-19.40	0.655405405405405	13	3-9,499-493;10-19,489-480	1-2,501-500[UP5];x-x,492-490[BULt];20-21,479-478[UP3]	..((((((((((...(((((((..&..)))))))---))))))))))..	UCAGGGAGUUAAUAUUAGGCAUAA&AAAUGCCUA---UUGAUUCCUUAU	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN16718_c0_g1_489_TPlot.pdf
TRINITY_DN16718_c0_g2:1934	si_s803	TRINITY_DN16718_c0_g2	1924	1943	1934	-26.00	-18.80	0.723076923076923	8	2-10,1942-1934;12-21,1933-1924	1-1,1943-1943[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	GAGGGGUGAC-AGGAUAGAGG&AUUUUAUCUUCGUUACCUUUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN16718_c0_g2_1934_TPlot.pdf
TRINITY_DN16718_c0_g2:1940	si_s88	TRINITY_DN16718_c0_g2	1926	1949	1940	-34.80	-23.50	0.675287356321839	7.5	1-11,1949-1939;12-14,1937-1935;15-21,1932-1926	x-x,1938-1938[BULt];x-x,1934-1933[BULt]	(((((((..(((.(((((((((((&)))))))))))-)))--)))))))	GGGGUGACAGGAUAGAGGAAAGGG&UCCUUUCUUCU-UCU--UCGCUUC	4	0.999999999999358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN16718_c0_g2_1940_TPlot.pdf
TRINITY_DN16718_c0_g2:2163	si_a276	TRINITY_DN16718_c0_g2	2152	2173	2163	-37.90	-25.00	0.659630606860158	9	1-4,2173-2170;5-8,2168-2165;11-11,2162-2162;14-21,2159-2152	x-x,2169-2169[BULt];9-10,2164-2163[SIL];12-13,2161-2160[SIL]	((((((((..(..((((.((((&))))-))))..)..))))))))	CCAAGCGACAUGCUCGUCAGGC&GCCU-ACGAAAAGAUCGCUUGG	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN16718_c0_g2_2163_TPlot.pdf
TRINITY_DN16718_c0_g2:2184	si_s86	TRINITY_DN16718_c0_g2	2171	2195	2184	-32.90	-22.50	0.683890577507599	11	1-7,2195-2189;8-17,2186-2177;18-21,2174-2171	x-x,2188-2187[BULt];x-x,2176-2175[BULt]	((((..((((((((((..(((((((&)))))))--))))))))))--))))	GGCGUCGAGAAGGAGGUCAGGGAGA&UUUCCUU--UCUUCUUCUU--CGCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN16718_c0_g2_2184_TPlot.pdf
TRINITY_DN16718_c0_g2:2218	si_s802	TRINITY_DN16718_c0_g2	2207	2228	2218	-26.40	-18.20	0.689393939393939	7	1-7,2228-2222;8-13,2220-2215;15-21,2213-2207	x-x,2221-2221[BULt];14-14,2214-2214[SIL]	(((((((.((((((.(((((((&)))))))-)))))).)))))))	GGAGGUGUCGAAGAGUAGGAUG&UAUUUUA-UCUUCGUUACCUUU	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN16718_c0_g2_2218_TPlot.pdf
TRINITY_DN16718_c0_g2:2220	si_s800	TRINITY_DN16718_c0_g2	2209	2230	2220	-29.70	-20.10	0.676767676767677	7.5	2-9,2229-2222;10-15,2220-2215;17-21,2213-2209	1-1,2230-2230[UP5];x-x,2221-2221[BULt];16-16,2214-2214[SIL]	(((((.((((((.((((((((.&.))))))))-)))))).)))))	AGGUGUCGAAGAGUAGGAUGCC&CGUAUUUUA-UCUUCGUUACCU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN16718_c0_g2_2220_TPlot.pdf
TRINITY_DN16718_c0_g2:2262	si_a566	TRINITY_DN16718_c0_g2	2252	2270	2262	-36.40	-24.70	0.678571428571429	6	1-7,2270-2264;9-14,2263-2258;16-18,2257-2255	8-8,x-x[BULq];15-15,x-x[BULq];19-21,2254-2252[UP3]	...(((-((((((-(((((((&))))))).)))))).)))...	UACCAU-CGAUUC-CGGGGAG&CUCCCCGUGAAUCGUAUGUUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN16718_c0_g2_2262_TPlot.pdf
TRINITY_DN16718_c0_g2:2327	si_a628	TRINITY_DN16718_c0_g2	2316	2336	2327	-27.10	-17.80	0.656826568265683	9.5	1-7,2336-2330;9-15,2328-2322	8-8,2329-2329[SIL];16-21,2321-2316[UP3]	......(((((((.(((((((&))))))).)))))))......	AGUGACAUCGACAAGAUACGU&GCGUAUUAUGUCGAUUUUUUU	2	0.999957624254765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN16718_c0_g2_2327_TPlot.pdf
TRINITY_DN1672_c0_g1:1899	si_a76	TRINITY_DN1672_c0_g1	1888	1908	1899	-21.20	-14.00	0.660377358490566	11	5-19,1904-1890	1-4,1908-1905[UP5];20-21,1889-1888[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCUGAUGAUGAAAAAUAUAAC&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999994308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1672_c0_g1_1899_TPlot.pdf
TRINITY_DN1672_c0_g1:1900	si_a75	TRINITY_DN1672_c0_g1	1889	1909	1900	-21.30	-14.00	0.657276995305164	12	6-20,1904-1890	1-5,1909-1905[UP5];21-21,1889-1889[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUGAUGAUGAAAAAUAUAACG&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1672_c0_g1_1900_TPlot.pdf
TRINITY_DN1672_c0_g1:1935	si_s76	TRINITY_DN1672_c0_g1	1923	1944	1935	-23.60	-16.20	0.686440677966102	6.5	1-10,1944-1935;11-18,1933-1926	x-x,1934-1934[BULt];19-21,1925-1923[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UUUGAAGGAAAUGAAAAAGAAU&AUUUUUUUUC-UUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1672_c0_g1_1935_TPlot.pdf
TRINITY_DN1672_c0_g1:1936	si_s75	TRINITY_DN1672_c0_g1	1924	1945	1936	-24.00	-17.50	0.729166666666667	5.5	1-11,1945-1935;12-19,1933-1926	x-x,1934-1934[BULt];20-21,1925-1924[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	UUGAAGGAAAUGAAAAAGAAUA&UAUUUUUUUUC-UUUCCUUUCU	2	0.999999999543278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1672_c0_g1_1936_TPlot.pdf
TRINITY_DN1672_c0_g1:1937	si_s74	TRINITY_DN1672_c0_g1	1925	1946	1937	-25.00	-17.70	0.708	5.5	2-12,1945-1935;13-20,1933-1926	1-1,1946-1946[UP5];x-x,1934-1934[BULt];21-21,1925-1925[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UGAAGGAAAUGAAAAAGAAUAA&CUAUUUUUUUUC-UUUCCUUUC	2	0.999999993919301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1672_c0_g1_1937_TPlot.pdf
TRINITY_DN1672_c0_g1:1938	si_s73	TRINITY_DN1672_c0_g1	1926	1947	1938	-24.00	-17.70	0.7375	5.5	3-13,1945-1935;14-21,1933-1926	1-2,1947-1946[UP5];x-x,1934-1934[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GAAGGAAAUGAAAAAGAAUAAU&UCUAUUUUUUUUC-UUUCCUUU	2	0.999999665452278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1672_c0_g1_1938_TPlot.pdf
TRINITY_DN1672_c0_g1:1939	si_s72	TRINITY_DN1672_c0_g1	1927	1948	1939	-24.10	-16.60	0.688796680497925	7	4-14,1945-1935;15-21,1933-1927	1-3,1948-1946[UP5];x-x,1934-1934[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AAGGAAAUGAAAAAGAAUAAUG&UUCUAUUUUUUUUC-UUUCCUU	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1672_c0_g1_1939_TPlot.pdf
TRINITY_DN1672_c0_g1:592	si_a319	TRINITY_DN1672_c0_g1	581	601	592	-22.40	-15.90	0.709821428571429	8	1-8,601-594;10-18,592-584	9-9,593-593[SIL];19-21,583-581[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UUCAAAAAAGUCCUGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1672_c0_g1_592_TPlot.pdf
TRINITY_DN1672_c0_g1:593	si_a318	TRINITY_DN1672_c0_g1	582	602	593	-22.50	-15.90	0.706666666666667	7.5	2-9,601-594;11-19,592-584	1-1,602-602[UP5];10-10,593-593[SIL];20-21,583-582[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UCAAAAAAGUCCUGGAUGGAA&AUUUAUCCAUGAUUUUUUUAU	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1672_c0_g1_593_TPlot.pdf
TRINITY_DN1672_c0_g1:594	si_a317	TRINITY_DN1672_c0_g1	583	603	594	-24.30	-15.90	0.654320987654321	8.5	3-10,601-594;12-20,592-584	1-2,603-602[UP5];11-11,593-593[SIL];21-21,583-583[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CAAAAAAGUCCUGGAUGGAAA&GAUUUAUCCAUGAUUUUUUUA	3	0.999999999986946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1672_c0_g1_594_TPlot.pdf
TRINITY_DN16731_c0_g1:916	si_s808	TRINITY_DN16731_c0_g1	905	928	916	-28.60	-18.60	0.65034965034965	13	3-9,926-920;10-19,916-907	1-2,928-927[UP5];x-x,919-917[BULt];20-21,906-905[UP3]	..((((((((((...(((((((..&..)))))))---))))))))))..	AAGGGAAAAGGUUACAACGAGGCA&AUCUUCGUU---ACCUUUUCUUAA	3	0.999999999999928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN16731_c0_g1_916_TPlot.pdf
TRINITY_DN16734_c0_g2:2410	si_a815	TRINITY_DN16734_c0_g2	2399	2418	2410	-33.80	-22.70	0.671597633136095	8	1-6,2418-2413;9-17,2411-2403	7-8,2412-2412[AILq];18-21,2402-2399[UP3]	....(((((((((.-((((((&))))))..)))))))))....	GGGGCCUUUCUUCG-CUUCGC&GCGAAGAAGAAGAAAGGAAAG	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a815_TRINITY_DN16734_c0_g2_2410_TPlot.pdf
TRINITY_DN16734_c0_g2:2453	si_s868	TRINITY_DN16734_c0_g2	2442	2462	2453	-35.90	-23.80	0.662952646239554	10	2-15,2461-2448	1-1,2462-2462[UP5];16-21,2447-2442[UP3]	......((((((((((((((.&.))))))))))))))......	CCAAAACUAGGAUCGGUGGGC&ACCUACCGGUCUUAGAACUAA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN16734_c0_g2_2453_TPlot.pdf
TRINITY_DN16735_c4_g1:69	si_a825	TRINITY_DN16735_c4_g1	58	78	69	-24.00	-16.40	0.683333333333333	4	1-2,78-77;4-15,75-64;17-20,62-59	3-3,76-76[SIL];16-16,63-63[SIL];21-21,58-58[UP3]	.((((.((((((((((((.((&)).)))))))))))).)))).	GAUUUCUUUUCUUUCCUUACU&AGAAAGGAAAGAAAAAAAAUA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a825_TRINITY_DN16735_c4_g1_69_TPlot.pdf
TRINITY_DN16735_c4_g1:70	si_a824	TRINITY_DN16735_c4_g1	59	79	70	-23.60	-16.20	0.686440677966102	4	2-3,78-77;5-16,75-64;18-21,62-59	1-1,79-79[UP5];4-4,76-76[SIL];17-17,63-63[SIL]	((((.((((((((((((.((.&.)).)))))))))))).))))	AUUUCUUUUCUUUCCUUACUA&AAGAAAGGAAAGAAAAAAAAU	0	0.0856603503683653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN16735_c4_g1_70_TPlot.pdf
TRINITY_DN1673_c0_g1:2459	si_a767	TRINITY_DN1673_c0_g1	2442	2467	2459	-30.10	-20.00	0.664451827242525	16	1-8,2467-2460;10-12,2459-2457;13-21,2450-2442	9-9,x-x[BULq];x-x,2456-2451[BULt]	(((((((((......(((-((((((((&)))))))).)))------)))))))))	GAGUUGAAUACCCUGCAG-CAAGAACC&GGUUUUUGAUUG------AUUCAACUC	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN1673_c0_g1_2459_TPlot.pdf
TRINITY_DN1673_c0_g1:4679	si_s434	TRINITY_DN1673_c0_g1	4667	4689	4679	-21.50	-14.60	0.67906976744186	6	1-2,4689-4688;3-14,4686-4675;15-20,4673-4668	x-x,4687-4687[BULt];x-x,4674-4674[BULt];21-21,4667-4667[UP3]	.((((((.((((((((((((.((&))-))))))))))))-)))))).	GAUGUAGUUAUGUGAUUAUUAGU&AC-AAUAAUUACAUA-UUAUAUA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN1673_c0_g1_4679_TPlot.pdf
TRINITY_DN1673_c0_g1:4880	si_a20	TRINITY_DN1673_c0_g1	4869	4889	4880	-26.70	-18.10	0.677902621722847	6.5	1-18,4889-4872	19-21,4871-4869[UP3]	...((((((((((((((((((&))))))))))))))))))...	CAUAAUUAGAAAUAGAUGGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1673_c0_g1_4880_TPlot.pdf
TRINITY_DN1673_c0_g1:4883	si_a17	TRINITY_DN1673_c0_g1	4872	4892	4883	-24.30	-18.10	0.744855967078189	9	4-21,4889-4872	1-3,4892-4890[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAUUAGAAAUAGAUGGGUGAU&AAAGCCUAUUUAUUUUUAGUU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN1673_c0_g1_4883_TPlot.pdf
TRINITY_DN1673_c0_g1:4884	si_a16	TRINITY_DN1673_c0_g1	4873	4893	4884	-26.30	-17.40	0.661596958174905	11	5-21,4889-4873	1-4,4893-4890[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUUAGAAAUAGAUGGGUGAUA&GAAAGCCUAUUUAUUUUUAGU	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN1673_c0_g1_4884_TPlot.pdf
TRINITY_DN1673_c0_g1:7179	si_s521	TRINITY_DN1673_c0_g1	7168	7188	7179	-23.90	-16.20	0.677824267782427	6	1-3,7188-7186;5-18,7184-7171	4-4,7185-7185[SIL];19-21,7170-7168[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AGCAUGAUUUUGAAUUACGAA&UUCUUAAUUCGAAAUCAUUUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN1673_c0_g1_7179_TPlot.pdf
TRINITY_DN1673_c0_g3:1451	si_a382	TRINITY_DN1673_c0_g3	1440	1460	1451	-24.60	-16.10	0.654471544715447	9	3-13,1458-1448;16-21,1445-1440	1-2,1460-1459[UP5];14-15,1447-1446[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GUGUUCGAAAUUUGAGGUCUU&AUGAUUUCGAAUUAAGAAUAU	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN1673_c0_g3_1451_TPlot.pdf
TRINITY_DN16740_c0_g1:615	si_a412	TRINITY_DN16740_c0_g1	604	624	615	-18.30	-12.90	0.704918032786885	7.5	1-16,624-609	17-21,608-604[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAGGGUUUAGAUAUAAAUAA&UUGUUUAUAUUUAAAUAAAUA	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN16740_c0_g1_615_TPlot.pdf
TRINITY_DN16740_c0_g1:617	si_a410	TRINITY_DN16740_c0_g1	606	626	617	-17.80	-13.10	0.735955056179775	8	3-18,624-609	1-2,626-625[UP5];19-21,608-606[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGGGUUUAGAUAUAAAUAAUC&UUUUGUUUAUAUUUAAAUAAA	4	0.99976599203554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN16740_c0_g1_617_TPlot.pdf
TRINITY_DN16742_c0_g1:2661	si_s72	TRINITY_DN16742_c0_g1	2650	2671	2661	-24.10	-17.10	0.70954356846473	6	2-7,2670-2665;8-14,2663-2657;16-21,2655-2650	1-1,2671-2671[UP5];x-x,2664-2664[BULt];15-15,2656-2656[SIL]	((((((.(((((((.((((((.&.))))))-))))))).))))))	AAGGAAUGAGAAGACAAUAGAC&UUCUAUU-UUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN16742_c0_g1_2661_TPlot.pdf
TRINITY_DN16742_c0_g1:2796	si_a78	TRINITY_DN16742_c0_g1	2785	2805	2796	-22.30	-16.30	0.730941704035874	5.5	1-14,2805-2792;17-20,2789-2786	15-16,2791-2790[SIL];21-21,2785-2785[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AUUUUUUUAGUGAAGAACAAU&AUUGUUUUUCAUUAUUAAGAA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN16742_c0_g1_2796_TPlot.pdf
TRINITY_DN16742_c0_g1:2801	si_a73	TRINITY_DN16742_c0_g1	2790	2810	2801	-21.90	-14.50	0.662100456621005	12.5	6-19,2805-2792	1-5,2810-2806[UP5];20-21,2791-2790[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUUAGUGAAGAACAAUAUUUA&UUCAAAUUGUUUUUCAUUAUU	4	0.99999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN16742_c0_g1_2801_TPlot.pdf
TRINITY_DN1674_c0_g1:1884	si_s199	TRINITY_DN1674_c0_g1	1872	1893	1884	-31.20	-22.30	0.71474358974359	9	3-12,1891-1882;13-21,1880-1872	1-2,1893-1892[UP5];x-x,1881-1881[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GCAAUUGGUGAUAUUCCAGGGA&AUUUUGGAAUGU-ACCAGUUGU	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN1674_c0_g1_1884_TPlot.pdf
TRINITY_DN16758_c0_g1:192	si_s777	TRINITY_DN16758_c0_g1	185	201	192	-26.60	-17.90	0.672932330827068	6	1-12,201-190;17-21,189-185	13-16,x-x[BULq]	(((((----((((((((((((&))))))))))))....)))))	CUUGU----UGGCAAUAGUGA&UUACUAUUGCUAUAAAACAAG	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN16758_c0_g1_192_TPlot.pdf
TRINITY_DN16758_c0_g1:196	si_s773	TRINITY_DN16758_c0_g1	185	205	196	-23.10	-15.30	0.662337662337662	11.5	5-16,201-190;19-20,187-186	1-4,205-202[UP5];17-18,189-188[SIL];21-21,185-185[UP3]	.((..((((((((((((....&....))))))))))))..)).	CUUGUUGGCAAUAGUGACAGA&UUAAUUACUAUUGCUAUAAAA	2	0.999827052000164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN16758_c0_g1_196_TPlot.pdf
TRINITY_DN16758_c0_g3:50	si_s75	TRINITY_DN16758_c0_g3	39	59	50	-24.00	-15.80	0.658333333333333	10.5	1-3,59-57;5-13,55-47;15-21,45-39	4-4,56-56[SIL];14-14,46-46[SIL]	(((((((.(((((((((.(((&))).))))))))).)))))))	AGAGGGGUGGGGAGGGAUGUA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN16758_c0_g3_50_TPlot.pdf
TRINITY_DN16758_c0_g3:564	si_a469	TRINITY_DN16758_c0_g3	553	574	564	-21.10	-14.80	0.701421800947867	7.5	1-8,574-567;9-18,565-556	x-x,566-566[BULt];19-21,555-553[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	AAUGCGGUAGUUAUCAUAUUAU&AUAAUAUG-UAAUUAUUGUUAU	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN16758_c0_g3_564_TPlot.pdf
TRINITY_DN16758_c0_g3:565	si_a468	TRINITY_DN16758_c0_g3	554	575	565	-21.30	-15.90	0.746478873239437	6	1-9,575-567;10-19,565-556	x-x,566-566[BULt];20-21,555-554[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUGCGGUAGUUAUCAUAUUAUA&UAUAAUAUG-UAAUUAUUGUUA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN16758_c0_g3_565_TPlot.pdf
TRINITY_DN16758_c0_g3:570	si_a464	TRINITY_DN16758_c0_g3	558	579	570	-19.60	-13.10	0.668367346938775	7.5	4-13,576-567;14-21,565-558	1-3,579-577[UP5];x-x,566-566[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GGUAGUUAUCAUAUUAUAUUUA&UAUAUAUAAUAUG-UAAUUAUU	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN16758_c0_g3_570_TPlot.pdf
TRINITY_DN16758_c0_g3:709	si_s431	TRINITY_DN16758_c0_g3	698	718	709	-21.10	-14.20	0.672985781990521	10	4-16,715-703	1-3,718-716[UP5];17-21,702-698[UP3]	.....(((((((((((((...&...))))))))))))).....	CCCCAAUGUAAUUAUUGUGUC&AUAACAAUAAUUACAUAUUAU	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN16758_c0_g3_709_TPlot.pdf
TRINITY_DN16758_c0_g3:710	si_s430	TRINITY_DN16758_c0_g3	699	719	710	-21.30	-14.20	0.666666666666667	11	5-17,715-703	1-4,719-716[UP5];18-21,702-699[UP3]	....(((((((((((((....&....)))))))))))))....	CCCAAUGUAAUUAUUGUGUCA&UAUAACAAUAAUUACAUAUUA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN16758_c0_g3_710_TPlot.pdf
TRINITY_DN1675_c0_g1:1156	si_s65	TRINITY_DN1675_c0_g1	1141	1165	1156	-26.00	-17.46	0.671538461538462	15	3-11,1163-1155;14-21,1148-1141	1-2,1165-1164[UP5];12-13,1154-1149[AILt]	((((((((......(((((((((..&..)))))))))----..))))))))	GAAAGAGACAACAGAGAAGUUGCAG&UAGCAACUUCU----AUUUUUUUUC	4	0.999997234426688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN1675_c0_g1_1156_TPlot.pdf
TRINITY_DN1675_c0_g1:122	si_s31	TRINITY_DN1675_c0_g1	111	133	122	-24.80	-16.60	0.669354838709677	6	1-6,133-128;7-7,126-126;8-19,124-113	x-x,127-127[BULt];x-x,125-125[BULt];20-21,112-111[UP3]	..((((((((((((.(.((((((&))))))-)-))))))))))))..	AAAUUAAAGAUUUAUGUUUGCAA&UUGCAA-C-UAAAUCUUUAAUAA	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN1675_c0_g1_122_TPlot.pdf
TRINITY_DN1675_c0_g1:1237	si_a149	TRINITY_DN1675_c0_g1	1226	1246	1237	-29.40	-21.10	0.717687074829932	8.5	3-19,1244-1228	1-2,1246-1245[UP5];20-21,1227-1226[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAUGAUCUUGAAACAGCAGAC&CGUUGUUGUUUUAAGGUCAAU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1675_c0_g1_1237_TPlot.pdf
TRINITY_DN1675_c0_g1:1238	si_a148	TRINITY_DN1675_c0_g1	1227	1247	1238	-30.30	-21.10	0.696369636963696	9	4-20,1244-1228	1-3,1247-1245[UP5];21-21,1227-1227[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AUGAUCUUGAAACAGCAGACU&UCGUUGUUGUUUUAAGGUCAA	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN1675_c0_g1_1238_TPlot.pdf
TRINITY_DN1675_c0_g1:1663	si_a398	TRINITY_DN1675_c0_g1	1652	1672	1663	-22.40	-14.90	0.665178571428572	8.5	3-5,1670-1668;7-20,1666-1653	1-2,1672-1671[UP5];6-6,1667-1667[SIL];21-21,1652-1652[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	AGAGCAAAGCAAUUUAAUAAU&AAUAUAGAAUUGUUUUGUUUA	3	0.999999992477201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1675_c0_g1_1663_TPlot.pdf
TRINITY_DN1675_c0_g1:1801	si_s8	TRINITY_DN1675_c0_g1	1789	1810	1801	-21.30	-14.50	0.68075117370892	5.5	1-12,1810-1799;15-16,1796-1795;17-21,1793-1789	13-14,1798-1797[SIL];x-x,1794-1794[BULt]	(((((.((..((((((((((((&))))))))))))..))-)))))	AAUAUCGGGAGUAGUAAGUAAU&AUUACUUAUUAUUACU-AUAUU	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN1675_c0_g1_1801_TPlot.pdf
TRINITY_DN1676_c0_g1:2157	si_a704	TRINITY_DN1676_c0_g1	2146	2169	2157	-29.30	-19.20	0.655290102389078	10	1-5,2169-2165;6-20,2161-2147	x-x,2164-2162[BULt];21-21,2146-2146[UP3]	.(((((((((((((((...(((((&)))))---))))))))))))))).	UUUAUUUUGGAAUGUGAUUUUAGU&ACUGG---UACAUUCCAAAAUAAU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN1676_c0_g1_2157_TPlot.pdf
TRINITY_DN1676_c0_g1:2158	si_a703	TRINITY_DN1676_c0_g1	2147	2170	2158	-29.20	-19.30	0.660958904109589	10	2-6,2169-2165;7-21,2161-2147	1-1,2170-2170[UP5];x-x,2164-2162[BULt]	(((((((((((((((...(((((.&.)))))---)))))))))))))))	UUAUUUUGGAAUGUGAUUUUAGUA&AACUGG---UACAUUCCAAAAUAA	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN1676_c0_g1_2158_TPlot.pdf
TRINITY_DN16770_c0_g1:1731	si_a455	TRINITY_DN16770_c0_g1	1720	1740	1731	-21.10	-14.50	0.687203791469194	11.5	7-21,1734-1720	1-6,1740-1735[UP5]	(((((((((((((((......&......)))))))))))))))	AUGUUAUAUAUAACAUUUCUG&AAUUGUUGUUAUAUAUAAUAU	4	0.999988743695479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN16770_c0_g1_1731_TPlot.pdf
TRINITY_DN16771_c0_g1:22	si_s578	TRINITY_DN16771_c0_g1	11	32	22	-27.00	-18.18	0.673333333333333	14	1-7,32-26;13-19,19-13	8-12,25-20[AILt];20-21,12-11[UP3]	..(((((((......(((((((&)))))))-.....)))))))..	ACCCAUGAUGAUAUGUAUUCCU&AGGAAUA-AAAAAAUCAUGGAU	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s578_TRINITY_DN16771_c0_g1_22_TPlot.pdf
TRINITY_DN16771_c0_g1:23	si_s577	TRINITY_DN16771_c0_g1	12	33	23	-26.80	-18.38	0.685820895522388	13	2-8,32-26;14-20,19-13	1-1,33-33[UP5];9-13,25-20[AILt];21-21,12-12[UP3]	.(((((((......(((((((.&.)))))))-.....))))))).	CCCAUGAUGAUAUGUAUUCCUA&AAGGAAUA-AAAAAAUCAUGGA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s577_TRINITY_DN16771_c0_g1_23_TPlot.pdf
TRINITY_DN16775_c0_g1:234	si_a471	TRINITY_DN16775_c0_g1	223	243	234	-21.10	-17.40	0.824644549763033	3.5	2-19,242-225	1-1,243-243[UP5];20-21,224-223[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACAUAAUAAUAAUUACAUAUC&AAUAUGUAAUUAUUGUUAUAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN16775_c0_g1_234_TPlot.pdf
TRINITY_DN1677_c0_g1:2453	si_s802	TRINITY_DN1677_c0_g1	2442	2462	2453	-26.40	-18.50	0.700757575757576	7	1-15,2462-2448;17-19,2446-2444	16-16,2447-2447[SIL];20-21,2443-2442[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UCGGGCAAUGAAGGUAAGGUA&UAUUUUAUCUUCGUUACCUUU	2	0.997966876744423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1677_c0_g1_2453_TPlot.pdf
TRINITY_DN1677_c0_g1:2454	si_s801	TRINITY_DN1677_c0_g1	2443	2463	2454	-28.20	-18.50	0.656028368794326	7	2-16,2462-2448;18-20,2446-2444	1-1,2463-2463[UP5];17-17,2447-2447[SIL];21-21,2443-2443[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	CGGGCAAUGAAGGUAAGGUAG&GUAUUUUAUCUUCGUUACCUU	3	0.999999899600981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN1677_c0_g1_2454_TPlot.pdf
TRINITY_DN1677_c0_g1:2455	si_s800	TRINITY_DN1677_c0_g1	2444	2465	2455	-29.70	-20.10	0.676767676767677	8	1-3,2465-2463;4-17,2461-2448;19-21,2446-2444	x-x,2462-2462[BULt];18-18,2447-2447[SIL]	(((.((((((((((((((.(((&)))-)))))))))))))).)))	GGGCAAUGAAGGUAAGGUAGCG&CGU-AUUUUAUCUUCGUUACCU	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN1677_c0_g1_2455_TPlot.pdf
TRINITY_DN1677_c0_g1:2456	si_s799	TRINITY_DN1677_c0_g1	2445	2466	2456	-30.00	-20.50	0.683333333333333	7.5	1-4,2466-2463;5-18,2461-2448;20-21,2446-2445	x-x,2462-2462[BULt];19-19,2447-2447[SIL]	((.((((((((((((((.((((&))))-)))))))))))))).))	GGCAAUGAAGGUAAGGUAGCGA&UCGU-AUUUUAUCUUCGUUACC	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN1677_c0_g1_2456_TPlot.pdf
TRINITY_DN1677_c0_g1:2457	si_s812	TRINITY_DN1677_c0_g1	2446	2466	2457	-26.40	-17.40	0.659090909090909	10	1-10,2466-2457;12-15,2455-2452	11-11,2456-2456[SIL];16-21,2451-2446[UP3]	......((((.((((((((((&)))))))))).))))......	GCAAUGAAGGUAAGGUAGCGA&UCGUUACCUUUUCUUAAUAAU	3	0.99999698871827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN1677_c0_g1_2457_TPlot.pdf
TRINITY_DN1677_c0_g1:2541	si_s8	TRINITY_DN1677_c0_g1	2530	2550	2541	-21.30	-14.60	0.685446009389671	13.5	5-17,2546-2534	1-4,2550-2547[UP5];18-21,2533-2530[UP3]	....(((((((((((((....&....)))))))))))))....	UUGUUAGUGAUGAUGAGGACG&AUUACUUAUUAUUACUAUAUU	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN1677_c0_g1_2541_TPlot.pdf
TRINITY_DN1677_c0_g1:2542	si_s7	TRINITY_DN1677_c0_g1	2531	2551	2542	-21.70	-14.60	0.672811059907834	14.5	6-18,2546-2534	1-5,2551-2547[UP5];19-21,2533-2531[UP3]	...(((((((((((((.....&.....)))))))))))))...	UGUUAGUGAUGAUGAGGACGU&UAUUACUUAUUAUUACUAUAU	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN1677_c0_g1_2542_TPlot.pdf
TRINITY_DN1677_c0_g1:2543	si_s6	TRINITY_DN1677_c0_g1	2532	2552	2543	-21.70	-14.60	0.672811059907834	15.5	7-19,2546-2534	1-6,2552-2547[UP5];20-21,2533-2532[UP3]	..(((((((((((((......&......)))))))))))))..	GUUAGUGAUGAUGAGGACGUA&AUAUUACUUAUUAUUACUAUA	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN1677_c0_g1_2543_TPlot.pdf
TRINITY_DN1677_c0_g1:2573	si_s68	TRINITY_DN1677_c0_g1	2562	2580	2573	-23.10	-16.00	0.692640692640693	6.5	1-8,2580-2573;11-19,2572-2564	9-10,x-x[BULq];20-21,2563-2562[UP3]	..(((((((((--((((((((&))))))))..)))))))))..	GCAGAAGAAAA--AGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.999999999999488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1677_c0_g1_2573_TPlot.pdf
TRINITY_DN1677_c0_g1:2635	si_a320	TRINITY_DN1677_c0_g1	2624	2644	2635	-24.40	-16.50	0.676229508196721	8	2-11,2643-2634;13-20,2632-2625	1-1,2644-2644[UP5];12-12,2633-2633[SIL];21-21,2624-2624[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UGAUGAAGGUGUUAUGGAUAG&UUAUCCAUGAUUUUUUUAUUC	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1677_c0_g1_2635_TPlot.pdf
TRINITY_DN1677_c0_g1:2636	si_a319	TRINITY_DN1677_c0_g1	2625	2645	2636	-22.40	-18.20	0.8125	6	1-12,2645-2634;14-21,2632-2625	13-13,2633-2633[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAUGAAGGUGUUAUGGAUAGA&UUUAUCCAUGAUUUUUUUAUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1677_c0_g1_2636_TPlot.pdf
TRINITY_DN1677_c0_g1:2637	si_a318	TRINITY_DN1677_c0_g1	2626	2646	2637	-22.50	-17.10	0.76	6	2-13,2645-2634;15-21,2632-2626	1-1,2646-2646[UP5];14-14,2633-2633[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AUGAAGGUGUUAUGGAUAGAG&AUUUAUCCAUGAUUUUUUUAU	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1677_c0_g1_2637_TPlot.pdf
TRINITY_DN1677_c0_g1:2638	si_a317	TRINITY_DN1677_c0_g1	2627	2647	2638	-24.30	-15.90	0.654320987654321	8	3-14,2645-2634;16-21,2632-2627	1-2,2647-2646[UP5];15-15,2633-2633[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UGAAGGUGUUAUGGAUAGAGG&GAUUUAUCCAUGAUUUUUUUA	3	0.999999999984016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1677_c0_g1_2638_TPlot.pdf
TRINITY_DN1677_c0_g1:2640	si_a785	TRINITY_DN1677_c0_g1	2628	2649	2640	-25.90	-17.12	0.661003861003861	10.5	1-11,2649-2639;15-21,2634-2628	12-14,2638-2635[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	GAAGGUGUUAUGGAUAGAGGAG&CUCUUCUAUUU-UUCUAUUUUC	2	0.999999999990943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1677_c0_g1_2640_TPlot.pdf
TRINITY_DN1677_c0_g1:2652	si_s807	TRINITY_DN1677_c0_g1	2641	2664	2652	-28.90	-19.10	0.660899653979239	13	1-7,2664-2658;9-9,2656-2656;10-19,2652-2643	8-8,2657-2657[SIL];x-x,2655-2653[BULt];20-21,2642-2641[UP3]	..((((((((((...(.(((((((&))))))).)---))))))))))..	AUAGAGGAGGUGGUCGGGAAGAUA&UAUCUUCGU---UACCUUUUCUUA	3	0.999999999986128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1677_c0_g1_2652_TPlot.pdf
TRINITY_DN1677_c0_g1:2656	si_s806	TRINITY_DN1677_c0_g1	2642	2665	2656	-28.60	-19.80	0.692307692307692	12	1-8,2665-2658;10-10,2656-2656;11-20,2652-2643	9-9,2657-2657[SIL];x-x,2655-2653[BULt];21-21,2642-2642[UP3]	.((((((((((...(.((((((((&)))))))).)---)))))))))).	UAGAGGAGGUGGUCGGGAAGAUAA&UUAUCUUCGU---UACCUUUUCUU	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1677_c0_g1_2656_TPlot.pdf
TRINITY_DN1677_c0_g1:2657	si_s805	TRINITY_DN1677_c0_g1	2643	2666	2657	-28.60	-20.00	0.699300699300699	12	2-9,2665-2658;11-11,2656-2656;12-21,2652-2643	1-1,2666-2666[UP5];10-10,2657-2657[SIL];x-x,2655-2653[BULt]	((((((((((...(.((((((((.&.)))))))).)---))))))))))	AGAGGAGGUGGUCGGGAAGAUAAU&UUUAUCUUCGU---UACCUUUUCU	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1677_c0_g1_2657_TPlot.pdf
TRINITY_DN1677_c0_g1:2658	si_s804	TRINITY_DN1677_c0_g1	2644	2667	2658	-27.90	-18.90	0.67741935483871	13.5	3-10,2665-2658;12-12,2656-2656;13-21,2652-2644	1-2,2667-2666[UP5];11-11,2657-2657[SIL];x-x,2655-2653[BULt]	(((((((((...(.((((((((..&..)))))))).)---)))))))))	GAGGAGGUGGUCGGGAAGAUAAUC&UUUUAUCUUCGU---UACCUUUUC	2	0.999972927599039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN1677_c0_g1_2658_TPlot.pdf
TRINITY_DN1677_c0_g1:2706	si_a784	TRINITY_DN1677_c0_g1	2695	2715	2706	-24.70	-16.20	0.65587044534413	8	2-8,2714-2708;10-16,2706-2700	1-1,2715-2715[UP5];9-9,2707-2707[SIL];17-21,2699-2695[UP3]	.....(((((((.(((((((.&.))))))).))))))).....	UUCAAAGAAAAAAAGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1677_c0_g1_2706_TPlot.pdf
TRINITY_DN1677_c0_g1:2707	si_a783	TRINITY_DN1677_c0_g1	2696	2716	2707	-24.70	-16.20	0.65587044534413	9	3-9,2714-2708;11-17,2706-2700	1-2,2716-2715[UP5];10-10,2707-2707[SIL];18-21,2699-2696[UP3]	....(((((((.(((((((..&..))))))).)))))))....	UCAAAGAAAAAAAGAAGAGGG&AACUCUUCUAUUUUUCUAUUU	2	0.999999999999831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1677_c0_g1_2707_TPlot.pdf
TRINITY_DN1677_c0_g1:2709	si_s68	TRINITY_DN1677_c0_g1	2698	2718	2709	-23.10	-15.20	0.658008658008658	9	4-8,2715-2711;10-21,2709-2698	1-3,2718-2716[UP5];9-9,2710-2710[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAAGAAAAAAAGAAGAGGGUA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1677_c0_g1_2709_TPlot.pdf
TRINITY_DN1677_c0_g1:2768	si_a138	TRINITY_DN1677_c0_g1	2757	2778	2768	-26.30	-17.20	0.653992395437262	6	1-9,2778-2770;10-21,2768-2757	x-x,2769-2769[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	GAUAAUGAUGAUAUAAUUGCUG&UAGUAAUUA-AUCGUUGUUGUU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN1677_c0_g1_2768_TPlot.pdf
TRINITY_DN1677_c0_g1:2811	si_a637	TRINITY_DN1677_c0_g1	2800	2820	2811	-25.80	-20.20	0.782945736434108	7.5	1-12,2820-2809;14-17,2807-2804	13-13,2808-2808[SIL];18-21,2803-2800[UP3]	....((((.((((((((((((&)))))))))))).))))....	AUGCUGCUGAAGAAGAUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN1677_c0_g1_2811_TPlot.pdf
TRINITY_DN1677_c0_g1:2816	si_a632	TRINITY_DN1677_c0_g1	2805	2825	2816	-26.10	-18.80	0.720306513409962	12	6-17,2820-2809;19-21,2807-2805	1-5,2825-2821[UP5];18-18,2808-2808[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GCUGAAGAAGAUCGACGACUU&AUUAUGUCGAUUUUUUUGAGU	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1677_c0_g1_2816_TPlot.pdf
TRINITY_DN1677_c0_g1:3698	si_s682	TRINITY_DN1677_c0_g1	3686	3707	3698	-26.60	-18.20	0.684210526315789	6.5	3-16,3705-3692;17-21,3690-3686	1-2,3707-3706[UP5];x-x,3691-3691[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	CUAAUGUGAAUUCAUGUUUUAG&UAGAAACAUGAGUUUA-AUUAG	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s682_TRINITY_DN1677_c0_g1_3698_TPlot.pdf
TRINITY_DN16782_c0_g1:3155	si_a467	TRINITY_DN16782_c0_g1	3142	3164	3155	-21.10	-15.20	0.720379146919431	7	2-16,3163-3149;17-20,3146-3143	1-1,3164-3164[UP5];x-x,3148-3147[BULt];21-21,3142-3142[UP3]	.((((..(((((((((((((((.&.)))))))))))))))--)))).	UACAGGUUAGUUGCAUAUUGUAG&AUAUAAUAUGUAAUUA--UUGUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN16782_c0_g1_3155_TPlot.pdf
TRINITY_DN16784_c0_g1:477	si_s814	TRINITY_DN16784_c0_g1	466	486	477	-26.60	-17.40	0.654135338345865	9	1-13,486-474	14-21,473-466[UP3]	........(((((((((((((&)))))))))))))........	GAAGUUAAAAGAAAAGGUGAC&GUUACCUUUUCUUAAUAAUGA	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN16784_c0_g1_477_TPlot.pdf
TRINITY_DN16784_c0_g1:478	si_s813	TRINITY_DN16784_c0_g1	467	487	478	-27.10	-17.70	0.653136531365314	9	2-14,486-474	1-1,487-487[UP5];15-21,473-467[UP3]	.......(((((((((((((.&.))))))))))))).......	AAGUUAAAAGAAAAGGUGACC&CGUUACCUUUUCUUAAUAAUG	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN16784_c0_g1_478_TPlot.pdf
TRINITY_DN16784_c0_g1:479	si_s812	TRINITY_DN16784_c0_g1	468	488	479	-26.40	-17.70	0.670454545454545	10	3-15,486-474	1-2,488-487[UP5];16-21,473-468[UP3]	......(((((((((((((..&..)))))))))))))......	AGUUAAAAGAAAAGGUGACCA&UCGUUACCUUUUCUUAAUAAU	3	0.999945552445062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN16784_c0_g1_479_TPlot.pdf
TRINITY_DN16784_c0_g1:480	si_s811	TRINITY_DN16784_c0_g1	469	489	480	-26.40	-17.70	0.670454545454545	11	4-16,486-474	1-3,489-487[UP5];17-21,473-469[UP3]	.....(((((((((((((...&...))))))))))))).....	GUUAAAAGAAAAGGUGACCAG&UUCGUUACCUUUUCUUAAUAA	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN16784_c0_g1_480_TPlot.pdf
TRINITY_DN16785_c0_g1:2025	si_a790	TRINITY_DN16785_c0_g1	2015	2034	2025	-25.80	-17.60	0.682170542635659	7	4-14,2031-2021;16-21,2020-2015	1-3,2034-2032[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GAUUGG-AAAUGGAAAAAGAU&CUAUUUUUCUAUUUUCCAAUC	2	0.997836334218218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN16785_c0_g1_2025_TPlot.pdf
TRINITY_DN1678_c0_g1:2374	si_a120	TRINITY_DN1678_c0_g1	2359	2383	2374	-30.50	-20.30	0.665573770491803	9	1-14,2383-2370;15-17,2365-2363	x-x,2369-2366[BULt];18-21,2362-2359[UP3]	....(((....((((((((((((((&))))))))))))))----)))....	AUAGUGCAAUUUAUAAAACAGGCUC&GAGCUUGUUUUAUA----GCAAUAG	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN1678_c0_g1_2374_TPlot.pdf
TRINITY_DN1678_c0_g1:2909	si_s890	TRINITY_DN1678_c0_g1	2898	2918	2909	-29.50	-21.00	0.711864406779661	17.5	9-20,2910-2899	1-8,2918-2911[UP5];21-21,2898-2898[UP3]	.((((((((((((........&........)))))))))))).	AGAAGAGGAGGCCAGAGCUCA&AAUAAAUAGGCUUUCUCUUCA	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN1678_c0_g1_2909_TPlot.pdf
TRINITY_DN1678_c0_g1:2965	si_s37	TRINITY_DN1678_c0_g1	2950	2974	2965	-24.40	-16.00	0.655737704918033	6.5	1-5,2974-2970;7-14,2968-2961;15-21,2956-2950	6-6,2969-2969[SIL];x-x,2960-2957[BULt]	(((((((....((((((((.(((((&))))).))))))))----)))))))	AUCCAAUGCUGUGUUAAAGUUUUAG&CUAAAUCUUUAAUA----AUUGGAU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN1678_c0_g1_2965_TPlot.pdf
TRINITY_DN1678_c0_g1:4205	si_s74	TRINITY_DN1678_c0_g1	4194	4216	4205	-25.00	-17.32	0.6928	15.5	1-5,4216-4212;11-21,4204-4194	6-10,4211-4205[AILt]	(((((((((((.......(((((&)))))--.....)))))))))))	GAGAGGAAAGGUUAAUUUAAUAG&CUAUU--UUUUUUCUUUCCUUUC	2	0.999999999964831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1678_c0_g1_4205_TPlot.pdf
TRINITY_DN16790_c0_g1:99	si_a783	TRINITY_DN16790_c0_g1	88	112	99	-24.70	-17.28	0.699595141700405	12	1-8,112-105;10-21,99-88	9-9,104-100[AILt]	((((((((((((.....((((((((&))))))))----.))))))))))))	GAGUAGGAGAAUUUAUCGAAGAGUU&AACUCUUC----UAUUUUUCUAUUU	2	0.999987170517223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN16790_c0_g1_99_TPlot.pdf
TRINITY_DN1679_c0_g1:1725	si_s76	TRINITY_DN1679_c0_g1	1714	1734	1725	-23.60	-15.90	0.673728813559322	10	5-18,1730-1717	1-4,1734-1731[UP5];19-21,1716-1714[UP3]	...((((((((((((((....&....))))))))))))))...	UUAAAAGGAAAGAAAAAUACA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1679_c0_g1_1725_TPlot.pdf
TRINITY_DN1679_c0_g1:1726	si_s75	TRINITY_DN1679_c0_g1	1715	1735	1726	-24.00	-15.90	0.6625	11	6-19,1730-1717	1-5,1735-1731[UP5];20-21,1716-1715[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAAAAGGAAAGAAAAAUACAA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1679_c0_g1_1726_TPlot.pdf
TRINITY_DN1679_c0_g1:1728	si_s73	TRINITY_DN1679_c0_g1	1717	1744	1728	-24.00	-16.78	0.699166666666667	19	1-5,1744-1740;8-21,1730-1717	6-7,1739-1731[AILt]	((((((((((((((.........(((((&)))))-------..))))))))))))))	AAAGGAAAGAAAAAUACAAUCCUGUAGA&UCUAU-------UUUUUUUCUUUCCUUU	2	0.999999999999872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1679_c0_g1_1728_TPlot.pdf
TRINITY_DN1679_c0_g1:1729	si_s72	TRINITY_DN1679_c0_g1	1718	1745	1729	-24.10	-16.78	0.696265560165975	19	1-6,1745-1740;9-21,1730-1718	7-8,1739-1731[AILt]	(((((((((((((.........((((((&))))))-------..)))))))))))))	AAGGAAAGAAAAAUACAAUCCUGUAGAA&UUCUAU-------UUUUUUUCUUUCCUU	2	0.999999999999797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1679_c0_g1_1729_TPlot.pdf
TRINITY_DN1679_c0_g1:1730	si_s71	TRINITY_DN1679_c0_g1	1719	1746	1730	-25.70	-18.18	0.707392996108949	19	1-7,1746-1740;10-21,1730-1719	8-9,1739-1731[AILt]	((((((((((((.........(((((((&)))))))-------..))))))))))))	AGGAAAGAAAAAUACAAUCCUGUAGAAG&CUUCUAU-------UUUUUUUCUUUCCU	2	0.999999998880991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1679_c0_g1_1730_TPlot.pdf
TRINITY_DN1679_c0_g1:714	si_a20	TRINITY_DN1679_c0_g1	700	724	714	-26.70	-17.60	0.659176029962547	11	1-3,724-722;4-11,720-713;12-21,709-700	x-x,721-721[BULt];x-x,712-710[BULt]	((((((((((...((((((((.(((&)))-))))))))---))))))))))	UAGAAUUGAACGAGGUAAAUAUGGC&GCC-UAUUUAUU---UUUAGUUCUA	3	0.999999948524549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1679_c0_g1_714_TPlot.pdf
TRINITY_DN167_c0_g1:329	si_a547	TRINITY_DN167_c0_g1	318	338	329	-26.90	-18.60	0.691449814126394	9	1-10,338-329;13-20,326-319	11-12,328-327[SIL];21-21,318-318[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	CGGUGGAGACCUAGGUUGGAU&GUUCAAUCUAUUUCUUUAUCU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN167_c0_g1_329_TPlot.pdf
TRINITY_DN167_c0_g1:63	si_a765	TRINITY_DN167_c0_g1	52	72	63	-30.50	-20.30	0.665573770491803	7.5	2-17,71-56	1-1,72-72[UP5];18-21,55-52[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUAUGAUCAGUCAAAAAUCCU&UGGGUUUUUGAUUGAUUCAAC	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN167_c0_g1_63_TPlot.pdf
TRINITY_DN167_c0_g1:65	si_a763	TRINITY_DN167_c0_g1	54	74	65	-28.80	-20.30	0.704861111111111	9	4-19,71-56	1-3,74-72[UP5];20-21,55-54[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUGAUCAGUCAAAAAUCCUAA&UUUGGGUUUUUGAUUGAUUCA	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN167_c0_g1_65_TPlot.pdf
TRINITY_DN1680_c0_g1:1608	si_s700	TRINITY_DN1680_c0_g1	1597	1618	1608	-29.20	-19.40	0.664383561643836	8	1-7,1618-1612;8-16,1610-1602;19-20,1599-1598	x-x,1611-1611[BULt];17-18,1601-1600[SIL];21-21,1597-1597[UP3]	.((..(((((((((.(((((((&)))))))-)))))))))..)).	CGUCAGCUGAUAGACUCGGCUA&UAGUCGA-UUUAUUAGUGAACA	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN1680_c0_g1_1608_TPlot.pdf
TRINITY_DN1680_c0_g1:1609	si_s699	TRINITY_DN1680_c0_g1	1598	1619	1609	-28.60	-19.10	0.667832167832168	8	2-8,1618-1612;9-17,1610-1602;20-21,1599-1598	1-1,1619-1619[UP5];x-x,1611-1611[BULt];18-19,1601-1600[SIL]	((..(((((((((.(((((((.&.)))))))-)))))))))..))	GUCAGCUGAUAGACUCGGCUAC&UUAGUCGA-UUUAUUAGUGAAC	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN1680_c0_g1_1609_TPlot.pdf
TRINITY_DN1680_c0_g1:281	si_a320	TRINITY_DN1680_c0_g1	270	290	281	-24.40	-17.10	0.700819672131148	9.5	1-14,290-277	15-21,276-270[UP3]	.......((((((((((((((&)))))))))))))).......	CCACGUCGAAGUCAUGGAUGA&UUAUCCAUGAUUUUUUUAUUC	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1680_c0_g1_281_TPlot.pdf
TRINITY_DN1680_c0_g1:288	si_a313	TRINITY_DN1680_c0_g1	277	303	288	-28.70	-19.00	0.662020905923345	16	2-7,302-297;8-21,290-277	1-1,303-303[UP5];x-x,296-291[BULt]	((((((((((((((......((((((.&.))))))------))))))))))))))	GAAGUCAUGGAUGAUAACGUAUUCAAA&CUUGGAU------UUAUCCAUGAUUUU	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN1680_c0_g1_288_TPlot.pdf
TRINITY_DN1680_c0_g1:48	si_s603	TRINITY_DN1680_c0_g1	37	58	48	-27.20	-18.20	0.669117647058823	7	1-8,58-51;9-18,49-40	x-x,50-50[BULt];19-21,39-37[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	AGAUAAAAAAGAUCUUGUUUGG&CCAAGCGA-AUCUUUUUUAAAU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN1680_c0_g1_48_TPlot.pdf
TRINITY_DN1680_c0_g1:503	si_s803	TRINITY_DN1680_c0_g1	492	512	503	-26.00	-17.10	0.657692307692308	13	7-14,506-499;16-21,497-492	1-6,512-507[UP5];15-15,498-498[SIL]	((((((.((((((((......&......)))))))).))))))	AGAAGGCGACGAAGAGCUCUC&AUUUUAUCUUCGUUACCUUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1680_c0_g1_503_TPlot.pdf
TRINITY_DN16811_c0_g1:197	si_a228	TRINITY_DN16811_c0_g1	187	205	197	-27.10	-19.10	0.70479704797048	3	1-2,205-204;4-13,203-194;15-21,193-187	3-3,x-x[BULq];14-14,x-x[BULq]	(((((((-((((((((((-((&)).)))))))))).)))))))	GAAUUGA-UAUAGAAACA-GA&UCAUGUUUCUAUAAUCAAUUC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN16811_c0_g1_197_TPlot.pdf
TRINITY_DN16811_c0_g2:14	si_a454	TRINITY_DN16811_c0_g2	2	23	14	-21.30	-14.40	0.676056338028169	6.5	1-14,23-10;15-17,8-6	x-x,9-9[BULt];18-21,5-2[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	GAGGAUACUAUGACAACAAUUG&UAAUUGUUGUUAUA-UAUAAUA	2	0.999267294216212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN16811_c0_g2_14_TPlot.pdf
TRINITY_DN16811_c0_g2:17	si_a451	TRINITY_DN16811_c0_g2	5	26	17	-23.60	-17.50	0.741525423728813	5.5	2-17,25-10;18-20,8-6	1-1,26-26[UP5];x-x,9-9[BULt];21-21,5-5[UP3]	.(((.((((((((((((((((.&.))))))))))))))))-))).	GAUACUAUGACAACAAUUGUUA&AGAUAAUUGUUGUUAUA-UAUA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN16811_c0_g2_17_TPlot.pdf
TRINITY_DN16811_c0_g2:20	si_a448	TRINITY_DN16811_c0_g2	9	29	20	-25.50	-17.50	0.686274509803922	10.5	5-20,25-10	1-4,29-26[UP5];21-21,9-9[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUAUGACAACAAUUGUUAAUG&AUGAGAUAAUUGUUGUUAUAU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN16811_c0_g2_20_TPlot.pdf
TRINITY_DN16811_c0_g2:21	si_a447	TRINITY_DN16811_c0_g2	10	30	21	-25.70	-17.40	0.67704280155642	11.5	6-21,25-10	1-5,30-26[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAUGACAACAAUUGUUAAUGC&UAUGAGAUAAUUGUUGUUAUA	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN16811_c0_g2_21_TPlot.pdf
TRINITY_DN1681_c0_g1:4940	si_a846	TRINITY_DN1681_c0_g1	4926	4949	4940	-32.50	-21.36	0.657230769230769	10	1-13,4949-4937;19-21,4928-4926	14-18,4936-4929[AILt]	(((........(((((((((((((&)))))))))))))---.....)))	GGACGAAAAAUAGUUGGCAGCUUC&GAAGUUGCUAACU---UGAAAUCC	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a846_TRINITY_DN1681_c0_g1_4940_TPlot.pdf
TRINITY_DN16824_c0_g1:46	si_s447	TRINITY_DN16824_c0_g1	35	56	46	-21.10	-14.90	0.706161137440758	7	1-8,56-49;10-19,46-37	9-9,48-47[AILt];20-21,36-35[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	AAAAUUGUUGUUUUUAUAUGAU&AUUAUAUA-UAACAACAAUUAU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN16824_c0_g1_46_TPlot.pdf
TRINITY_DN16827_c0_g1:1518	si_a183	TRINITY_DN16827_c0_g1	1505	1527	1518	-30.10	-19.90	0.661129568106312	9	3-5,1525-1523;7-17,1521-1511;18-21,1508-1505	1-2,1527-1526[UP5];6-6,1522-1522[SIL];x-x,1510-1509[BULt]	((((..(((((((((((.(((..&..))).)))))))))))--))))	AACAAUGGGAAGGAUAUAGUCAA&UAGAUAAUAUCUUUCCC--UGUU	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN16827_c0_g1_1518_TPlot.pdf
TRINITY_DN1682_c0_g1:1461	si_s489	TRINITY_DN1682_c0_g1	1450	1470	1461	-17.90	-11.80	0.659217877094972	8	1-15,1470-1456	16-21,1455-1450[UP3]	......(((((((((((((((&)))))))))))))))......	AAUUUCUAUGUUUAGAUAAAU&AUUUAUUUAAAUAUAAACAAA	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN1682_c0_g1_1461_TPlot.pdf
TRINITY_DN1682_c0_g1:1462	si_s488	TRINITY_DN1682_c0_g1	1451	1471	1462	-18.30	-12.60	0.688524590163934	7	1-16,1471-1456	17-21,1455-1451[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUUCUAUGUUUAGAUAAAUG&UAUUUAUUUAAAUAUAAACAA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN1682_c0_g1_1462_TPlot.pdf
TRINITY_DN1682_c0_g1:1463	si_s487	TRINITY_DN1682_c0_g1	1452	1472	1463	-18.40	-13.90	0.755434782608696	6.5	1-17,1472-1456	18-21,1455-1452[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUCUAUGUUUAGAUAAAUGU&AUAUUUAUUUAAAUAUAAACA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN1682_c0_g1_1463_TPlot.pdf
TRINITY_DN1682_c0_g1:1464	si_s486	TRINITY_DN1682_c0_g1	1453	1473	1464	-18.10	-13.90	0.767955801104972	6.5	2-18,1472-1456	1-1,1473-1473[UP5];19-21,1455-1453[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUCUAUGUUUAGAUAAAUGUC&UAUAUUUAUUUAAAUAUAAAC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN1682_c0_g1_1464_TPlot.pdf
TRINITY_DN1682_c0_g1:1465	si_s485	TRINITY_DN1682_c0_g1	1454	1474	1465	-18.10	-13.90	0.767955801104972	7.5	3-19,1472-1456	1-2,1474-1473[UP5];20-21,1455-1454[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UCUAUGUUUAGAUAAAUGUCA&CUAUAUUUAUUUAAAUAUAAA	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1682_c0_g1_1465_TPlot.pdf
TRINITY_DN1682_c0_g1:1466	si_s484	TRINITY_DN1682_c0_g1	1455	1475	1466	-20.50	-13.90	0.678048780487805	8.5	4-20,1472-1456	1-3,1475-1473[UP5];21-21,1455-1455[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUAUGUUUAGAUAAAUGUCAU&CCUAUAUUUAUUUAAAUAUAA	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN1682_c0_g1_1466_TPlot.pdf
TRINITY_DN16833_c0_g1:2297	si_s80	TRINITY_DN16833_c0_g1	2285	2306	2297	-28.20	-18.80	0.666666666666667	4.5	1-14,2306-2293;16-20,2290-2286	15-15,2292-2291[AILt];21-21,2285-2285[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	AAAGAAAAGAAGGAAAGAAAGA&UUUUUCUUUCCUUU-CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN16833_c0_g1_2297_TPlot.pdf
TRINITY_DN1683_c0_g1:247	si_s187	TRINITY_DN1683_c0_g1	236	254	247	-29.60	-20.40	0.689189189189189	8	2-4,253-251;7-20,250-237	1-1,254-254[UP5];5-6,x-x[BULq];21-21,236-236[UP3]	.((((((((((((((--(((.&.)))..)))))))))))))).	AUCCAAAAUGGUCGU--CUCA&CGAGUAACGAUUAUUUUGGAA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s187_TRINITY_DN1683_c0_g1_247_TPlot.pdf
TRINITY_DN1683_c0_g1:394	si_a762	TRINITY_DN1683_c0_g1	383	403	394	-29.70	-20.00	0.673400673400673	10	1-14,403-390	15-21,389-383[UP3]	.......((((((((((((((&)))))))))))))).......	AUAGAUUUCAGGAACCCAGAG&CUUUGGGUUUUUGAUUGAUUC	3	0.999998686930523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1683_c0_g1_394_TPlot.pdf
TRINITY_DN1683_c0_g1:395	si_a761	TRINITY_DN1683_c0_g1	384	404	395	-30.10	-20.40	0.677740863787375	10	2-15,403-390	1-1,404-404[UP5];16-21,389-384[UP3]	......((((((((((((((.&.))))))))))))))......	UAGAUUUCAGGAACCCAGAGA&CCUUUGGGUUUUUGAUUGAUU	2	0.999739210418293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN1683_c0_g1_395_TPlot.pdf
TRINITY_DN1683_c0_g1:825	si_a319	TRINITY_DN1683_c0_g1	814	834	825	-22.40	-15.40	0.6875	11	1-13,834-822	14-21,821-814[UP3]	........(((((((((((((&)))))))))))))........	AAAAUCACAGUCAUGGGUGAA&UUUAUCCAUGAUUUUUUUAUU	2	0.999998354356807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1683_c0_g1_825_TPlot.pdf
TRINITY_DN1683_c0_g1:826	si_a318	TRINITY_DN1683_c0_g1	815	835	826	-22.50	-15.40	0.684444444444444	10.5	2-14,834-822	1-1,835-835[UP5];15-21,821-815[UP3]	.......(((((((((((((.&.))))))))))))).......	AAAUCACAGUCAUGGGUGAAA&AUUUAUCCAUGAUUUUUUUAU	4	0.99999999839502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1683_c0_g1_826_TPlot.pdf
TRINITY_DN16840_c0_g1:34	si_s808	TRINITY_DN16840_c0_g1	22	43	34	-28.60	-19.50	0.681818181818182	7.5	2-8,42-36;10-14,34-30;15-19,28-24	1-1,43-43[UP5];9-9,35-35[SIL];x-x,29-29[BULt];20-21,23-22[UP3]	..(((((.(((((.(((((((.&.))))))).)))))-)))))..	CAAAGAGAAAGGUUGCGAAGAA&AUCUUCGUUACCUU-UUCUUAA	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN16840_c0_g1_34_TPlot.pdf
TRINITY_DN16843_c0_g1:2193	si_s898	TRINITY_DN16843_c0_g1	2179	2203	2193	-30.70	-21.62	0.704234527687296	8.5	1-8,2203-2196;9-14,2194-2189;17-21,2183-2179	x-x,2195-2195[BULt];15-16,2188-2184[AILt]	(((((.....((((((.((((((((&))))))))-))))))---..)))))	GUUGAUAAAUUUGAAGAAGAGAGCC&GGCUUUCU-CUUCAA---UUUCAAU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN16843_c0_g1_2193_TPlot.pdf
TRINITY_DN16843_c0_g1:729	si_s186	TRINITY_DN16843_c0_g1	717	738	729	-31.90	-21.30	0.667711598746082	9.5	1-6,738-733;9-11,730-728;12-20,726-718	7-8,732-731[SIL];x-x,727-727[BULt];21-21,717-717[UP3]	.(((((((((.(((..((((((&))))))..)))-))))))))).	CCCGGGAUAACUCGCCGCUCGG&CCGAGUAACGA-UUAUUUUGGA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN16843_c0_g1_729_TPlot.pdf
TRINITY_DN1684_c0_g1:246	si_a410	TRINITY_DN1684_c0_g1	235	255	246	-17.80	-11.60	0.651685393258427	11.5	2-14,254-242	1-1,255-255[UP5];15-21,241-235[UP3]	.......(((((((((((((.&.))))))))))))).......	CUUUAAAGAAUGUGAACGAAG&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1684_c0_g1_246_TPlot.pdf
TRINITY_DN1684_c1_g1:379	si_a675	TRINITY_DN1684_c1_g1	368	388	379	-34.00	-24.80	0.729411764705882	8	1-5,388-384;8-18,381-371	6-7,383-382[SIL];19-21,370-368[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	ACUCCGCGUGGAUAUUGAAUC&GAUUCCUUAUUCACGCGGUUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN1684_c1_g1_379_TPlot.pdf
TRINITY_DN1686_c0_g1:2237	si_a870	TRINITY_DN1686_c0_g1	2225	2246	2237	-24.80	-16.90	0.681451612903226	7.5	1-17,2246-2230;18-19,2228-2227	x-x,2229-2229[BULt];20-21,2226-2225[UP3]	..((.(((((((((((((((((&)))))))))))))))))-))..	UAUGAUGACUAGGUCUUUGAUG&UAUUAAAGAUUUAGUUG-CAAU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN1686_c0_g1_2237_TPlot.pdf
TRINITY_DN1686_c0_g1:2240	si_a867	TRINITY_DN1686_c0_g1	2229	2249	2240	-24.10	-16.50	0.684647302904564	10.5	4-19,2246-2231	1-3,2249-2247[UP5];20-21,2230-2229[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUGACUAGGUCUUUGAUGCCC&AAUUAUUAAAGAUUUAGUUGC	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN1686_c0_g1_2240_TPlot.pdf
TRINITY_DN1686_c0_g1:2245	si_a862	TRINITY_DN1686_c0_g1	2234	2259	2245	-22.70	-15.80	0.696035242290749	17	3-8,2257-2252;9-21,2246-2234	1-2,2259-2258[UP5];x-x,2251-2247[BULt]	(((((((((((((.....((((((..&..))))))-----)))))))))))))	UAGGUCUUUGAUGCCCGUGUUGGACG&AAUCCAAU-----UAUUAAAGAUUUA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN1686_c0_g1_2245_TPlot.pdf
TRINITY_DN1686_c0_g1:3995	si_s793	TRINITY_DN1686_c0_g1	3980	4007	3995	-30.50	-20.70	0.678688524590164	11	1-9,4007-3999;10-14,3995-3991;15-21,3986-3980	x-x,3998-3996[BULt];x-x,3990-3987[BULt]	(((((((....(((((...(((((((((&)))))))))---)))))----)))))))	GAGGAUACCUCGAAUAAGUCGAGCUUGU&ACAAGCUCG---UAUUU----UAUCUUC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN1686_c0_g1_3995_TPlot.pdf
TRINITY_DN16880_c0_g1:865	si_a780	TRINITY_DN16880_c0_g1	854	874	865	-27.30	-18.60	0.681318681318681	9.5	1-14,874-861	15-21,860-854[UP3]	.......((((((((((((((&)))))))))))))).......	AGUAACUGUGGAAGAGUUGGA&UUCAACUCUUCUAUUUUUCUA	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN16880_c0_g1_865_TPlot.pdf
TRINITY_DN16880_c0_g1:866	si_a779	TRINITY_DN16880_c0_g1	855	875	866	-27.00	-18.60	0.688888888888889	9	2-15,874-861	1-1,875-875[UP5];16-21,860-855[UP3]	......((((((((((((((.&.))))))))))))))......	GUAACUGUGGAAGAGUUGGAA&AUUCAACUCUUCUAUUUUUCU	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN16880_c0_g1_866_TPlot.pdf
TRINITY_DN16880_c0_g1:867	si_a778	TRINITY_DN16880_c0_g1	856	876	867	-28.30	-18.60	0.657243816254417	10	3-16,874-861	1-2,876-875[UP5];17-21,860-856[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAACUGUGGAAGAGUUGGAAG&GAUUCAACUCUUCUAUUUUUC	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN16880_c0_g1_867_TPlot.pdf
TRINITY_DN16880_c0_g1:869	si_a776	TRINITY_DN16880_c0_g1	858	878	869	-27.10	-18.60	0.686346863468635	12	5-18,874-861	1-4,878-875[UP5];19-21,860-858[UP3]	...((((((((((((((....&....))))))))))))))...	ACUGUGGAAGAGUUGGAAGCU&UUGAUUCAACUCUUCUAUUUU	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN16880_c0_g1_869_TPlot.pdf
TRINITY_DN1688_c0_g1:1956	si_a548	TRINITY_DN1688_c0_g1	1945	1965	1956	-27.20	-18.60	0.683823529411765	9.5	5-8,1961-1958;10-21,1956-1945	1-4,1965-1962[UP5];9-9,1957-1957[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAGAUAGAGAAAGAGAUAAAA&UUCAAUCUAUUUCUUUAUCUC	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN1688_c0_g1_1956_TPlot.pdf
TRINITY_DN1688_c0_g1:2043	si_a326	TRINITY_DN1688_c0_g1	2031	2052	2043	-26.20	-17.60	0.67175572519084	10.5	3-11,2050-2042;13-21,2039-2031	1-2,2052-2051[UP5];12-12,2041-2040[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	GACGAGGAAGAAAAAGGAUUCG&AUGAUUUUUUU-AUUCCUUGUC	4	0.999999984772108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1688_c0_g1_2043_TPlot.pdf
TRINITY_DN16890_c0_g1:449	si_a359	TRINITY_DN16890_c0_g1	439	458	449	-29.20	-19.00	0.650684931506849	7.5	2-11,457-448;13-19,447-441	1-1,458-458[UP5];12-12,x-x[BULq];20-21,440-439[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	UAGGUCUGG-CAAAAUGGAAA&AUUCUAUUUUGAUCGGAUCAA	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN16890_c0_g1_449_TPlot.pdf
TRINITY_DN16890_c0_g1:452	si_a792	TRINITY_DN16890_c0_g1	440	461	452	-27.60	-18.00	0.652173913043478	6	1-13,461-449;14-16,447-445;19-20,442-441	x-x,448-448[BULt];17-18,444-443[SIL];21-21,440-440[UP3]	.((..(((.(((((((((((((&)))))))))))))-)))..)).	AGGUCUGGCAAAAUGGAAAGAU&AUUUUUCUAUUUU-CCAAUCCG	2	0.999953187730242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN16890_c0_g1_452_TPlot.pdf
TRINITY_DN16890_c0_g1:455	si_a789	TRINITY_DN16890_c0_g1	443	464	455	-24.80	-20.60	0.830645161290323	5	1-16,464-449;17-19,447-445	x-x,448-448[BULt];20-21,444-443[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	UCUGGCAAAAUGGAAAGAUAGA&UCUAUUUUUCUAUUUU-CCAAU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN16890_c0_g1_455_TPlot.pdf
TRINITY_DN16891_c1_g1:72	si_s75	TRINITY_DN16891_c1_g1	60	81	72	-24.00	-17.80	0.741666666666667	5	1-11,81-71;13-16,69-66;17-21,64-60	12-12,70-70[SIL];x-x,65-65[BULt]	(((((.((((.(((((((((((&))))))))))).))))-)))))	AGAAACGGAAUGAAGAAAGAUA&UAUUUUUUUUCUUUCC-UUUCU	4	0.999999999999794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN16891_c1_g1_72_TPlot.pdf
TRINITY_DN16896_c1_g1:1447	si_a461	TRINITY_DN16896_c1_g1	1433	1456	1447	-21.50	-14.00	0.651162790697674	10	1-11,1456-1446;12-17,1442-1437	x-x,1445-1443[BULt];18-21,1436-1433[UP3]	....((((((...(((((((((((&)))))))))))---))))))....	CAAAACAUAUAUGUAUAUAUAACA&UGUUAUAUAUA---AUAUGUAAUU	4	0.99998152635743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN16896_c1_g1_1447_TPlot.pdf
TRINITY_DN1689_c0_g1:561	si_a149	TRINITY_DN1689_c0_g1	549	570	561	-29.40	-20.70	0.704081632653061	7	2-14,569-557;15-18,555-552	1-1,570-570[UP5];x-x,556-556[BULt];19-21,551-549[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	AAAGACCGUUAAAAUAACAGCA&CGUUGUUGUUUUAA-GGUCAAU	2	0.93690066453088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1689_c0_g1_561_TPlot.pdf
TRINITY_DN1690_c0_g1:1607	si_s39	TRINITY_DN1690_c0_g1	1595	1616	1607	-22.30	-15.70	0.704035874439462	7	3-16,1614-1601;17-18,1599-1598	1-2,1616-1615[UP5];x-x,1600-1600[BULt];19-21,1597-1595[UP3]	...((.((((((((((((((..&..))))))))))))))-))...	CAUUCGCAAUUAUUAAAGAUGC&AAAUCUUUAAUAAUUG-GAUUU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1690_c0_g1_1607_TPlot.pdf
TRINITY_DN1690_c0_g1:402	si_a1	TRINITY_DN1690_c0_g1	391	411	402	-28.30	-18.40	0.65017667844523	9	3-16,409-396	1-2,411-410[UP5];17-21,395-391[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUCUGCUCUUCGAUUUCAAAU&AAUUGAAAUUGAAGAGAAAGC	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN1690_c0_g1_402_TPlot.pdf
TRINITY_DN1690_c0_g1:794	si_a784	TRINITY_DN1690_c0_g1	782	803	794	-24.70	-16.20	0.65587044534413	6.5	2-14,802-790;16-21,787-782	1-1,803-803[UP5];15-15,789-788[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	GAAGUAUUAGAAAUGGAAGGGG&ACUCUUCUAUUUUU-CUAUUUU	2	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1690_c0_g1_794_TPlot.pdf
TRINITY_DN1690_c0_g1:887	si_a326	TRINITY_DN1690_c0_g1	874	896	887	-26.20	-17.80	0.679389312977099	6	1-7,896-890;9-16,888-881;17-21,878-874	8-8,889-889[SIL];x-x,880-879[BULt]	(((((..((((((((.(((((((&))))))).))))))))--)))))	GGCAGCUGGAAUAGACAAAUCAU&AUGAUUUUUUUAUUCC--UUGUC	2	0.999885305960264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1690_c0_g1_887_TPlot.pdf
TRINITY_DN1691_c0_g1:4137	si_s182	TRINITY_DN1691_c0_g1	4125	4147	4137	-32.60	-22.40	0.687116564417178	8.5	3-6,4145-4142;7-11,4140-4136;12-21,4134-4125	1-2,4147-4146[UP5];x-x,4141-4141[BULt];x-x,4135-4135[BULt]	((((((((((.(((((.((((..&..))))-)))))-))))))))))	GAAUAAUCGUGUACUCUGGGUUG&AUGCCC-GAGUA-ACGAUUAUUU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN1691_c0_g1_4137_TPlot.pdf
TRINITY_DN1691_c0_g1:5431	si_a877	TRINITY_DN1691_c0_g1	5420	5440	5431	-27.00	-17.60	0.651851851851852	10	1-6,5440-5435;9-20,5432-5421	7-8,5434-5433[SIL];21-21,5420-5420[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CGUGUUGGUUGUAUAUGAGUU&GAUUUAGUUGCAAUCAAUAUA	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN1691_c0_g1_5431_TPlot.pdf
TRINITY_DN1691_c0_g1:5432	si_a876	TRINITY_DN1691_c0_g1	5421	5441	5432	-27.30	-18.30	0.67032967032967	9.5	1-7,5441-5435;10-21,5432-5421	8-9,5434-5433[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	GUGUUGGUUGUAUAUGAGUUU&AGAUUUAGUUGCAAUCAAUAU	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN1691_c0_g1_5432_TPlot.pdf
TRINITY_DN1691_c0_g1:6402	si_a158	TRINITY_DN1691_c0_g1	6391	6411	6402	-31.40	-20.60	0.656050955414013	15	8-21,6404-6391	1-7,6411-6405[UP5]	((((((((((((((.......&.......))))))))))))))	GGUGAGUGGGUUGAAACAACA&UUUAAGGUCAAUCUAUUCACC	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a158_TRINITY_DN1691_c0_g1_6402_TPlot.pdf
TRINITY_DN1691_c0_g1:967	si_a816	TRINITY_DN1691_c0_g1	955	976	967	-32.30	-22.50	0.696594427244582	4	2-12,975-965;13-21,963-955	1-1,976-976[UP5];x-x,964-964[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	UUUUUCUUUAUCUUCUUCUUCC&CGAAGAAGAAGA-AAGGAAAGA	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN1691_c0_g1_967_TPlot.pdf
TRINITY_DN16922_c2_g1:260	si_a71	TRINITY_DN16922_c2_g1	248	269	260	-23.30	-15.30	0.656652360515022	6	1-13,269-257;14-17,255-252	x-x,256-256[BULt];18-21,251-248[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	CGAAGAAACAAUAAUUUGAAAG&CUUUCAAAUUGUU-UUUCAUUA	4	0.999999999999719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN16922_c2_g1_260_TPlot.pdf
TRINITY_DN1692_c0_g1:5151	si_s436	TRINITY_DN1692_c0_g1	5139	5160	5151	-19.60	-14.50	0.739795918367347	6.5	3-13,5158-5148;14-20,5146-5140	1-2,5160-5159[UP5];x-x,5147-5147[BULt];21-21,5139-5139[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	AAUAUAUGUAUAUGUGAUUAAA&AAUAAUUACAUAU-UAUAUAUA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN1692_c0_g1_5151_TPlot.pdf
TRINITY_DN1692_c0_g1:5152	si_s435	TRINITY_DN1692_c0_g1	5140	5161	5152	-20.90	-14.20	0.679425837320574	7.5	4-14,5158-5148;15-21,5146-5140	1-3,5161-5159[UP5];x-x,5147-5147[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AUAUAUGUAUAUGUGAUUAAAA&CAAUAAUUACAUAU-UAUAUAU	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN1692_c0_g1_5152_TPlot.pdf
TRINITY_DN16942_c0_g1:2730	si_a139	TRINITY_DN16942_c0_g1	2719	2739	2730	-25.90	-17.60	0.67953667953668	6.5	2-7,2738-2733;10-21,2730-2719	1-1,2739-2739[UP5];8-9,2732-2731[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	AAAUAACAAUGAAGAAUUACA&AGUAAUUAAUCGUUGUUGUUU	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN16942_c0_g1_2730_TPlot.pdf
TRINITY_DN16947_c0_g2:474	si_s64	TRINITY_DN16947_c0_g2	463	483	474	-24.10	-17.88	0.741908713692946	4	1-12,483-472;16-20,468-464	13-15,471-469[SIL];21-21,463-463[UP3]	.(((((...((((((((((((&))))))))))))...))))).	UAAAAAUGGAGAAGUUGCUAA&UUAGCAACUUCUAUUUUUUUU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN16947_c0_g2_474_TPlot.pdf
TRINITY_DN16947_c0_g2:968	si_a765	TRINITY_DN16947_c0_g2	956	977	968	-30.50	-21.00	0.688524590163934	7.5	1-9,977-969;11-13,967-965;16-21,961-956	10-10,968-968[SIL];14-15,964-962[AILt]	((((((...(((.(((((((((&))))))))).)))-..))))))	GUUGAACUAGAUGGAGAACCCA&UGGGUUUUUGAUU-GAUUCAAC	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN16947_c0_g2_968_TPlot.pdf
TRINITY_DN1694_c0_g1:783	si_a635	TRINITY_DN1694_c0_g1	772	791	783	-26.10	-17.20	0.659003831417624	7.5	2-5,790-787;7-18,786-775	1-1,791-791[UP5];6-6,x-x[BULq];19-21,774-772[UP3]	...((((((((((((-((((.&.)))).))))))))))))...	GCAGCUCAAAGAAAU-GACAC&AUGUCGAUUUUUUUGAGUAAU	2	0.999999827027323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1694_c0_g1_783_TPlot.pdf
TRINITY_DN1694_c0_g1:784	si_a634	TRINITY_DN1694_c0_g1	773	792	784	-26.40	-17.20	0.651515151515151	8.5	3-6,790-787;8-19,786-775	1-2,792-791[UP5];7-7,x-x[BULq];20-21,774-773[UP3]	..((((((((((((-((((..&..)))).))))))))))))..	CAGCUCAAAGAAAU-GACACA&UAUGUCGAUUUUUUUGAGUAA	3	0.999999999997931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1694_c0_g1_784_TPlot.pdf
TRINITY_DN1694_c0_g1:785	si_a633	TRINITY_DN1694_c0_g1	774	793	785	-26.40	-17.20	0.651515151515151	9	4-7,790-787;9-20,786-775	1-3,793-791[UP5];8-8,x-x[BULq];21-21,774-774[UP3]	.((((((((((((-((((...&...)))).)))))))))))).	AGCUCAAAGAAAU-GACACAU&UUAUGUCGAUUUUUUUGAGUA	2	0.999999922974697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1694_c0_g1_785_TPlot.pdf
TRINITY_DN16956_c0_g1:1964	si_a318	TRINITY_DN16956_c0_g1	1953	1975	1964	-22.50	-15.20	0.675555555555556	9.5	2-8,1974-1968;9-19,1965-1955	1-1,1975-1975[UP5];x-x,1967-1966[BULt];20-21,1954-1953[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	CAAAGAAAAUCGUGCGGAUGAAA&AUUUAUCC--AUGAUUUUUUUAU	2	0.9999998041018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN16956_c0_g1_1964_TPlot.pdf
TRINITY_DN16957_c0_g1:629	si_a460	TRINITY_DN16957_c0_g1	617	638	629	-21.60	-14.20	0.657407407407407	7.5	1-11,638-628;12-18,626-620	x-x,627-627[BULt];19-21,619-617[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UAAAUAUAUUAAUGUAUGACAA&UUGUUAUAUAU-AAUAUGUAAU	3	0.999969729732114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN16957_c0_g1_629_TPlot.pdf
TRINITY_DN16957_c0_g1:630	si_a459	TRINITY_DN16957_c0_g1	618	639	630	-23.20	-15.80	0.681034482758621	7	1-12,639-628;13-19,626-620	x-x,627-627[BULt];20-21,619-618[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	AAAUAUAUUAAUGUAUGACAAU&GUUGUUAUAUAU-AAUAUGUAA	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN16957_c0_g1_630_TPlot.pdf
TRINITY_DN16957_c0_g1:634	si_a455	TRINITY_DN16957_c0_g1	622	643	634	-21.10	-14.80	0.701421800947867	6.5	3-16,641-628;17-21,626-622	1-2,643-642[UP5];x-x,627-627[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AUAUUAAUGUAUGACAAUAAAA&AAUUGUUGUUAUAUAU-AAUAU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN16957_c0_g1_634_TPlot.pdf
TRINITY_DN1695_c0_g1:1038	si_s79	TRINITY_DN1695_c0_g1	1027	1052	1038	-26.20	-19.10	0.729007633587786	15	3-8,1050-1045;9-21,1039-1027	1-2,1052-1051[UP5];x-x,1044-1040[BULt]	(((((((((((((.....((((((..&..))))))-----)))))))))))))	AGGAAGAGAGGAAAAAGCAGGAAAUC&UUUUUUCU-----UUCCUUUCUUCUU	2	0.999999999827003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1695_c0_g1_1038_TPlot.pdf
TRINITY_DN1695_c0_g1:1039	si_s78	TRINITY_DN1695_c0_g1	1028	1053	1039	-26.20	-18.40	0.702290076335878	17	4-9,1050-1045;10-21,1039-1028	1-3,1053-1051[UP5];x-x,1044-1040[BULt]	((((((((((((.....((((((...&...))))))-----))))))))))))	GGAAGAGAGGAAAAAGCAGGAAAUCG&UUUUUUUCU-----UUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1695_c0_g1_1039_TPlot.pdf
TRINITY_DN1695_c0_g1:1144	si_s73	TRINITY_DN1695_c0_g1	1133	1153	1144	-24.00	-16.20	0.675	6	1-12,1153-1142;15-20,1139-1134	13-14,1141-1140[SIL];21-21,1133-1133[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	CGAGGAGCAAAGAAAAAUGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1695_c0_g1_1144_TPlot.pdf
TRINITY_DN1695_c0_g1:1145	si_s72	TRINITY_DN1695_c0_g1	1134	1154	1145	-24.10	-16.30	0.676348547717842	6	2-13,1153-1142;16-21,1139-1134	1-1,1154-1154[UP5];14-15,1141-1140[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GAGGAGCAAAGAAAAAUGGAC&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1695_c0_g1_1145_TPlot.pdf
TRINITY_DN1695_c0_g1:274	si_s69	TRINITY_DN1695_c0_g1	258	283	274	-23.40	-15.90	0.67948717948718	14	2-10,282-274;11-20,268-259	1-1,283-283[UP5];x-x,273-269[BULt];21-21,258-258[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	AAAAGAAAAGACCAAGGAUAGAAGUA&AACUUCUAUU-----UUUUUUCUUUC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1695_c0_g1_274_TPlot.pdf
TRINITY_DN1695_c0_g1:275	si_s68	TRINITY_DN1695_c0_g1	259	284	275	-23.10	-15.90	0.688311688311688	14.5	3-11,282-274;12-21,268-259	1-2,284-283[UP5];x-x,273-269[BULt]	((((((((((.....(((((((((..&..)))))))))-----))))))))))	AAAGAAAAGACCAAGGAUAGAAGUAU&CAACUUCUAUU-----UUUUUUCUUU	4	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1695_c0_g1_275_TPlot.pdf
TRINITY_DN1695_c0_g1:388	si_a636	TRINITY_DN1695_c0_g1	377	397	388	-26.30	-17.50	0.665399239543726	9	2-4,396-394;6-17,392-381	1-1,397-397[UP5];5-5,393-393[SIL];18-21,380-377[UP3]	....((((((((((((.(((.&.))).))))))))))))....	AUAGGCUUAGAAAAAUGGACG&UGUCGAUUUUUUUGAGUAAUA	2	0.999992940807132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN1695_c0_g1_388_TPlot.pdf
TRINITY_DN1695_c0_g1:598	si_a786	TRINITY_DN1695_c0_g1	588	608	598	-26.60	-18.70	0.703007518796992	5	1-9,608-600;10-14,598-594;16-21,593-588	x-x,599-599[BULt];15-15,x-x[BULq]	((((((-(((((.(((((((((&)))))))))-))))).))))))	GGAAAA-AGAAAUGAUGGAAGA&UCUUCUAUU-UUUCUAUUUUCC	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1695_c0_g1_598_TPlot.pdf
TRINITY_DN1695_c0_g1:613	si_a499	TRINITY_DN1695_c0_g1	599	622	613	-35.20	-23.90	0.678977272727273	11	1-10,622-613;11-17,609-603	x-x,612-610[BULt];18-21,602-599[UP3]	....(((((((...((((((((((&))))))))))---)))))))....	UGAUGGAAGACUUGGAGAAACGAC&GUCGUUUUUC---GUCUUCCUUGG	3	0.999999952528498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1695_c0_g1_613_TPlot.pdf
TRINITY_DN16965_c0_g1:647	si_s44	TRINITY_DN16965_c0_g1	636	656	647	-24.70	-16.10	0.651821862348178	6	1-12,656-645;14-19,644-639;20-21,637-636	13-13,x-x[BULq];x-x,638-638[BULt]	((.((((((-((((((((((((&)))))))))))).))))))-))	GCUUUGGGA-CCAGUUGUUAAG&UUUAAUAAUUGGAUUUCAA-GU	2	0.974564613511492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN16965_c0_g1_647_TPlot.pdf
TRINITY_DN16965_c0_g1:648	si_s43	TRINITY_DN16965_c0_g1	638	657	648	-25.50	-19.00	0.745098039215686	5.5	1-13,657-645;15-21,644-638	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	UUUGGGA-CCAGUUGUUAAGG&CUUUAAUAAUUGGAUUUCAAG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN16965_c0_g1_648_TPlot.pdf
TRINITY_DN16965_c0_g1:649	si_s42	TRINITY_DN16965_c0_g1	639	658	649	-24.90	-19.80	0.795180722891566	5	1-14,658-645;16-21,644-639	15-15,x-x[BULq]	((((((-((((((((((((((&)))))))))))))).))))))	UUGGGA-CCAGUUGUUAAGGA&UCUUUAAUAAUUGGAUUUCAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN16965_c0_g1_649_TPlot.pdf
TRINITY_DN16965_c0_g1:650	si_s41	TRINITY_DN16965_c0_g1	640	659	650	-25.00	-19.90	0.796	5	1-15,659-645;17-21,644-640	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	UGGGA-CCAGUUGUUAAGGAU&AUCUUUAAUAAUUGGAUUUCA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN16965_c0_g1_650_TPlot.pdf
TRINITY_DN16965_c0_g1:651	si_s40	TRINITY_DN16965_c0_g1	641	660	651	-24.30	-18.60	0.765432098765432	5.5	2-16,659-645;18-21,644-641	1-1,660-660[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	GGGA-CCAGUUGUUAAGGAUC&AAUCUUUAAUAAUUGGAUUUC	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN16965_c0_g1_651_TPlot.pdf
TRINITY_DN16965_c0_g1:652	si_s39	TRINITY_DN16965_c0_g1	641	661	652	-22.30	-17.20	0.771300448430493	9.5	3-17,659-645	1-2,661-660[UP5];18-21,644-641[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGGACCAGUUGUUAAGGAUCU&AAAUCUUUAAUAAUUGGAUUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN16965_c0_g1_652_TPlot.pdf
TRINITY_DN16965_c0_g1:653	si_s38	TRINITY_DN16965_c0_g1	642	662	653	-22.70	-17.20	0.757709251101322	10.5	4-18,659-645	1-3,662-660[UP5];19-21,644-642[UP3]	...(((((((((((((((...&...)))))))))))))))...	GGACCAGUUGUUAAGGAUCUC&UAAAUCUUUAAUAAUUGGAUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN16965_c0_g1_653_TPlot.pdf
TRINITY_DN16965_c0_g1:654	si_s37	TRINITY_DN16965_c0_g1	643	663	654	-24.40	-17.20	0.704918032786885	11	5-19,659-645	1-4,663-660[UP5];20-21,644-643[UP3]	..(((((((((((((((....&....)))))))))))))))..	GACCAGUUGUUAAGGAUCUCG&CUAAAUCUUUAAUAAUUGGAU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN16965_c0_g1_654_TPlot.pdf
TRINITY_DN16965_c0_g1:655	si_s36	TRINITY_DN16965_c0_g1	644	664	655	-25.00	-17.20	0.688	12	6-20,659-645	1-5,664-660[UP5];21-21,644-644[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACCAGUUGUUAAGGAUCUCGA&ACUAAAUCUUUAAUAAUUGGA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN16965_c0_g1_655_TPlot.pdf
TRINITY_DN16965_c0_g1:656	si_s35	TRINITY_DN16965_c0_g1	645	665	656	-24.00	-17.20	0.716666666666667	13	7-21,659-645	1-6,665-660[UP5]	(((((((((((((((......&......)))))))))))))))	CCAGUUGUUAAGGAUCUCGAA&AACUAAAUCUUUAAUAAUUGG	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN16965_c0_g1_656_TPlot.pdf
TRINITY_DN1696_c1_g1:1338	si_s443	TRINITY_DN1696_c1_g1	1329	1347	1338	-23.50	-16.20	0.68936170212766	7	1-13,1347-1335;16-20,1334-1330	14-15,x-x[BULq];21-21,1329-1329[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	AUGUUG--AUGUGUGAUGUGU&ACAUAUUAUAUAUAACAACAA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN1696_c1_g1_1338_TPlot.pdf
TRINITY_DN1696_c1_g1:1339	si_s442	TRINITY_DN1696_c1_g1	1330	1348	1339	-23.80	-16.00	0.672268907563025	7	2-14,1347-1335;17-21,1334-1330	1-1,1348-1348[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	UGUUG--AUGUGUGAUGUGUC&UACAUAUUAUAUAUAACAACA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN1696_c1_g1_1339_TPlot.pdf
TRINITY_DN1696_c2_g1:903	si_a785	TRINITY_DN1696_c2_g1	892	913	903	-25.90	-17.50	0.675675675675676	8.5	1-7,913-907;10-16,903-897;18-21,895-892	8-9,906-904[AILt];17-17,896-896[SIL]	((((.(((((((...(((((((&)))))))-..))))))).))))	GAAAUUGGAAAAUUAGGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1696_c2_g1_903_TPlot.pdf
TRINITY_DN16973_c0_g1:1603	si_a110	TRINITY_DN16973_c0_g1	1592	1612	1603	-27.80	-18.10	0.651079136690648	13	5-10,1608-1603;12-19,1601-1594	1-4,1612-1609[UP5];11-11,1602-1602[SIL];20-21,1593-1592[UP3]	..((((((((.((((((....&....)))))).))))))))..	CCGACAGGCUGGUGUUUAGUG&GAUAAAAUACGAGCUUGUUUU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN16973_c0_g1_1603_TPlot.pdf
TRINITY_DN16973_c0_g1:1672	si_s68	TRINITY_DN16973_c0_g1	1659	1680	1672	-23.10	-15.30	0.662337662337662	6.5	1-5,1680-1676;7-13,1675-1669;14-21,1666-1659	6-6,x-x[BULq];x-x,1668-1667[BULt]	((((((((..(((((((-(((((&))))).)))))))--))))))))	GGAGAAAGCUAAAGUAG-AGUUG&CAACUUCUAUUUU--UUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN16973_c0_g1_1672_TPlot.pdf
TRINITY_DN16974_c0_g1:441	si_a326	TRINITY_DN16974_c0_g1	429	450	441	-26.20	-17.10	0.652671755725191	11	4-10,447-441;11-21,439-429	1-3,450-448[UP5];x-x,440-440[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GGCAGGGAAUACAGGGAAUAUU&AUGAUUUUUU-UAUUCCUUGUC	3	0.999999999998802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN16974_c0_g1_441_TPlot.pdf
TRINITY_DN16976_c0_g1:2468	si_s285	TRINITY_DN16976_c0_g1	2456	2477	2468	-35.50	-26.60	0.749295774647887	9	3-11,2475-2467;12-19,2465-2458	1-2,2477-2476[UP5];x-x,2466-2466[BULt];20-21,2457-2456[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	CACAAUCGACUUGGGCGUGUAC&UAAUACGCCUA-GUCGAUUGGA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s285_TRINITY_DN16976_c0_g1_2468_TPlot.pdf
TRINITY_DN16976_c0_g2:496	si_a609	TRINITY_DN16976_c0_g2	483	507	496	-38.10	-24.88	0.653018372703412	14	1-3,507-505;6-11,500-495;12-21,492-483	4-5,504-501[AILt];x-x,494-493[BULt]	((((((((((..((((((....(((&)))--..))))))--))))))))))	GCCUGGUUGAAUUUGGGAAUCGGCG&CGC--AAUUCCAA--UCGACUAGGC	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a609_TRINITY_DN16976_c0_g2_496_TPlot.pdf
TRINITY_DN16976_c0_g2:527	si_a884	TRINITY_DN16976_c0_g2	515	536	527	-25.60	-17.30	0.67578125	9	1-10,536-527;13-19,523-517	11-12,526-524[AILt];20-21,516-515[UP3]	..(((((((...((((((((((&))))))))))-..)))))))..	UGAUUGCUGACCUUGAUUGCAA&UUGCAAUCAA-UAUAGUAAUAA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN16976_c0_g2_527_TPlot.pdf
TRINITY_DN16981_c0_g1:771	si_a642	TRINITY_DN16981_c0_g1	760	780	771	-25.90	-17.70	0.683397683397683	5	1-14,780-767;16-21,765-760	15-15,766-766[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	CUGAUAAAUUACUUAAAAGGG&UUUUUUUGAGUAAUAUAUCGG	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN16981_c0_g1_771_TPlot.pdf
TRINITY_DN16989_c0_g1:14	si_a425	TRINITY_DN16989_c0_g1	12	23	14	-30.80	-20.50	0.665584415584416	2	11-21,22-12	10-10,23-23[SIL]	(((((((((((.&.)))))))))))	CCGACGGAUCCC&AAUAAAUAUAGG	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN16989_c0_g1_14_TPlot.pdf
TRINITY_DN16989_c0_g1:62	si_s204	TRINITY_DN16989_c0_g1	51	72	62	-36.30	-25.70	0.707988980716253	9.5	1-3,72-70;5-7,68-66;9-20,63-52	4-4,69-69[SIL];8-8,65-64[AILt];21-21,51-51[UP3]	.((((((((((((..(((.(((&))).)))-.)))))))))))).	AGGGCACAGCUGGCGACGGUCC&GGAAUGU-ACCAGUUGUGUUCG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s204_TRINITY_DN16989_c0_g1_62_TPlot.pdf
TRINITY_DN16989_c0_g1:66	si_s201	TRINITY_DN16989_c0_g1	54	75	66	-33.60	-23.10	0.6875	11	2-6,74-70;8-10,68-66;12-21,63-54	1-1,75-75[UP5];7-7,69-69[SIL];11-11,65-64[AILt]	((((((((((..(((.(((((.&.))))).)))-.))))))))))	GCACAGCUGGCGACGGUCCGGU&UUUGGAAUGU-ACCAGUUGUGU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN16989_c0_g1_66_TPlot.pdf
TRINITY_DN1698_c0_g1:2512	si_a118	TRINITY_DN1698_c0_g1	2500	2521	2512	-30.70	-20.30	0.661237785016287	10	3-10,2519-2512;12-19,2509-2502	1-2,2521-2520[UP5];11-11,2511-2510[AILt];20-21,2501-2500[UP3]	..((((((((..((((((((..&..))))))))-.))))))))..	GCUGCUAUAAUUAUAAGCUCUG&ACGAGCUUGU-UUUAUAGCAAU	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN1698_c0_g1_2512_TPlot.pdf
TRINITY_DN1698_c0_g1:606	si_a636	TRINITY_DN1698_c0_g1	595	616	606	-26.30	-20.00	0.760456273764259	7	2-4,615-613;5-18,611-598	1-1,616-616[UP5];x-x,612-612[BULt];19-21,597-595[UP3]	...((((((((((((((.(((.&.)))-))))))))))))))...	AGAUACUCAAAAGAAUCAGACG&UGUC-GAUUUUUUUGAGUAAUA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN1698_c0_g1_606_TPlot.pdf
TRINITY_DN1698_c0_g1:607	si_a635	TRINITY_DN1698_c0_g1	596	617	607	-26.10	-21.30	0.816091954022989	6	1-5,617-613;6-19,611-598	x-x,612-612[BULt];20-21,597-596[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	GAUACUCAAAAGAAUCAGACGU&AUGUC-GAUUUUUUUGAGUAAU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1698_c0_g1_607_TPlot.pdf
TRINITY_DN1698_c0_g1:608	si_a634	TRINITY_DN1698_c0_g1	597	618	608	-26.40	-21.30	0.806818181818182	6	2-6,617-613;7-20,611-598	1-1,618-618[UP5];x-x,612-612[BULt];21-21,597-597[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	AUACUCAAAAGAAUCAGACGUC&UAUGUC-GAUUUUUUUGAGUAA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1698_c0_g1_608_TPlot.pdf
TRINITY_DN16993_c1_g1:111	si_s580	TRINITY_DN16993_c1_g1	100	121	111	-24.40	-16.10	0.659836065573771	13	1-6,121-116;11-18,110-103	7-10,115-111[AILt];19-21,102-100[UP3]	...((((((((.....((((((&))))))-....))))))))...	CUUUCCAUGAUGCUAGUUAUUC&GAAUAA-AAAAAUCAUGGAUAA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN16993_c1_g1_111_TPlot.pdf
TRINITY_DN16997_c0_g1:416	si_a297	TRINITY_DN16997_c0_g1	403	426	416	-27.20	-19.30	0.709558823529412	6	1-7,426-420;9-18,417-408;19-21,405-403	8-8,419-418[AILt];x-x,407-406[BULt]	(((..((((((((((..(((((((&)))))))-.))))))))))--)))	CCAAAAGCGAAUCUUGGUUUAAAU&AUUUAAA-AAAGAUUCGCU--UGG	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN16997_c0_g1_416_TPlot.pdf
TRINITY_DN16998_c0_g1:63	si_a852	TRINITY_DN16998_c0_g1	52	73	63	-28.80	-21.70	0.753472222222222	8	1-7,73-67;9-20,64-53	8-8,66-65[AILt];21-21,52-52[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	UUGGUUGGAUUUUCUAGUUGGC&GCUAACU-UGAAAUCCAAUUAU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN16998_c0_g1_63_TPlot.pdf
TRINITY_DN16998_c0_g1:646	si_a624	TRINITY_DN16998_c0_g1	634	655	646	-32.30	-22.20	0.687306501547988	11	1-11,655-645;13-14,642-641;16-18,639-637	12-12,644-643[AILt];15-15,640-640[SIL];19-21,636-634[UP3]	...(((.((..(((((((((((&)))))))))))-.)).)))...	CCUUCGUCAAGGGUACGCCUGG&CUAGGCGUAUU-AUGUCGAUUU	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN16998_c0_g1_646_TPlot.pdf
TRINITY_DN16998_c0_g1:65	si_a850	TRINITY_DN16998_c0_g1	54	75	65	-29.00	-20.60	0.710344827586207	10	3-9,73-67;11-21,64-54	1-2,75-74[UP5];10-10,66-65[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GGUUGGAUUUUCUAGUUGGCUG&UUGCUAACU-UGAAAUCCAAUU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN16998_c0_g1_65_TPlot.pdf
TRINITY_DN16998_c0_g1:6986	si_s80	TRINITY_DN16998_c0_g1	6974	6995	6986	-28.20	-26.20	0.929078014184397	5	1-13,6995-6983;14-21,6981-6974	x-x,6982-6982[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GAAGAGGAGGAGGAGAGAGAGA&UUUUUCUUUCCUU-UCUUCUUC	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN16998_c0_g1_6986_TPlot.pdf
TRINITY_DN16998_c0_g1:6987	si_s79	TRINITY_DN16998_c0_g1	6975	6996	6987	-26.20	-23.40	0.893129770992366	5.5	1-14,6996-6983;15-21,6981-6975	x-x,6982-6982[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	AAGAGGAGGAGGAGAGAGAGAG&UUUUUUCUUUCCUU-UCUUCUU	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN16998_c0_g1_6987_TPlot.pdf
TRINITY_DN16998_c0_g1:6993	si_s73	TRINITY_DN16998_c0_g1	6982	7002	6993	-24.00	-20.70	0.8625	8.5	1-4,7002-6999;6-21,6997-6982	5-5,6998-6998[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	GGAGGAGAGAGAGAGGCUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN16998_c0_g1_6993_TPlot.pdf
TRINITY_DN16998_c0_g1:6994	si_s72	TRINITY_DN16998_c0_g1	6983	7003	6994	-24.10	-20.80	0.863070539419087	8.5	1-5,7003-6999;7-21,6997-6983	6-6,6998-6998[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GAGGAGAGAGAGAGGCUGGAG&UUCUAUUUUUUUUCUUUCCUU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN16998_c0_g1_6994_TPlot.pdf
TRINITY_DN16998_c0_g1:7016	si_s90	TRINITY_DN16998_c0_g1	7005	7025	7016	-35.30	-23.10	0.654390934844193	9	1-4,7025-7022;6-19,7020-7007	5-5,7021-7021[SIL];20-21,7006-7005[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAGAGGCGGAGGAGGGCGAAG&CUUUCUUCUUCUUCGCUUCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN16998_c0_g1_7016_TPlot.pdf
TRINITY_DN16998_c0_g1:7017	si_s89	TRINITY_DN16998_c0_g1	7006	7028	7017	-35.30	-25.20	0.713881019830028	10	1-2,7028-7027;3-6,7025-7022;7-20,7020-7007	x-x,7026-7026[BULt];x-x,7021-7021[BULt];21-21,7006-7006[UP3]	.((((((((((((((.((((.((&))-))))-)))))))))))))).	AGAGGCGGAGGAGGGCGAAGUGG&CC-UUUC-UUCUUCUUCGCUUCG	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN16998_c0_g1_7017_TPlot.pdf
TRINITY_DN16998_c0_g1:8440	si_a53	TRINITY_DN16998_c0_g1	8429	8449	8440	-39.00	-25.60	0.656410256410256	11	4-7,8446-8443;9-18,8441-8432	1-3,8449-8447[UP5];8-8,8442-8442[SIL];19-21,8431-8429[UP3]	...((((((((((.((((...&...)))).))))))))))...	ACCGAGCGGGUCGUCUCCGCC&CUAGGAGUCGACUCGCUUCUU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN16998_c0_g1_8440_TPlot.pdf
TRINITY_DN16998_c0_g1:873	si_a564	TRINITY_DN16998_c0_g1	861	884	873	-37.60	-24.90	0.662234042553191	9.5	3-8,882-877;9-17,874-866;18-21,864-861	1-2,884-883[UP5];x-x,876-875[BULt];x-x,865-865[BULt]	((((.(((((((((..((((((..&..))))))--)))))))))-))))	GCGUGAUGAUUCACUCGGGGAGUC&AUCUCCCC--GUGAAUCGU-AUGU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN16998_c0_g1_873_TPlot.pdf
TRINITY_DN16998_c0_g1:9405	si_s89	TRINITY_DN16998_c0_g1	9393	9414	9405	-35.30	-25.30	0.71671388101983	5	2-16,9413-9399;18-21,9396-9393	1-1,9414-9414[UP5];17-17,9398-9397[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	CGAAUUCGAAGAAGGAGAAGGA&CCUUUCUUCUUCUUCG-CUUCG	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN16998_c0_g1_9405_TPlot.pdf
TRINITY_DN16998_c0_g1:9756	si_s369	TRINITY_DN16998_c0_g1	9744	9766	9756	-42.00	-27.70	0.65952380952381	5	1-9,9766-9758;10-13,9756-9753;15-15,9751-9751;16-21,9749-9744	x-x,9757-9757[BULt];14-14,9752-9752[SIL];x-x,9750-9750[BULt]	((((((.(.((((.(((((((((&)))))))))-)))).)-))))))	GACAUGACCGGCGUAUCGGUUCA&UGAACCGAU-CGCUCG-CGUGUC	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN16998_c0_g1_9756_TPlot.pdf
TRINITY_DN169_c0_g2:5316	si_s485	TRINITY_DN169_c0_g2	5305	5325	5316	-18.10	-14.40	0.795580110497238	5	2-18,5324-5308	1-1,5325-5325[UP5];19-21,5307-5305[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAGAUAUUUAAAUAAAUGUAA&CUAUAUUUAUUUAAAUAUAAA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN169_c0_g2_5316_TPlot.pdf
TRINITY_DN169_c0_g2:5317	si_s484	TRINITY_DN169_c0_g2	5306	5326	5317	-20.50	-14.40	0.702439024390244	6	3-19,5324-5308	1-2,5326-5325[UP5];20-21,5307-5306[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AGAUAUUUAAAUAAAUGUAAU&CCUAUAUUUAUUUAAAUAUAA	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN169_c0_g2_5317_TPlot.pdf
TRINITY_DN169_c0_g2:5318	si_s483	TRINITY_DN169_c0_g2	5307	5327	5318	-21.40	-14.40	0.672897196261682	7	4-20,5324-5308	1-3,5327-5325[UP5];21-21,5307-5307[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GAUAUUUAAAUAAAUGUAAUU&UCCUAUAUUUAUUUAAAUAUA	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN169_c0_g2_5318_TPlot.pdf
TRINITY_DN169_c0_g2:5319	si_s482	TRINITY_DN169_c0_g2	5308	5328	5319	-21.20	-14.00	0.660377358490566	8	5-21,5324-5308	1-4,5328-5325[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUAUUUAAAUAAAUGUAAUUA&AUCCUAUAUUUAUUUAAAUAU	2	0.998291993200065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN169_c0_g2_5319_TPlot.pdf
TRINITY_DN169_c2_g1:315	si_a640	TRINITY_DN169_c2_g1	304	324	315	-24.10	-15.80	0.655601659751037	6	1-4,324-321;6-20,319-305	5-5,320-320[SIL];21-21,304-304[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	AAUAUAUUAUUUAAAAUGAUC&GAUUUUUUUGAGUAAUAUAUC	3	0.999993884044885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN169_c2_g1_315_TPlot.pdf
TRINITY_DN169_c2_g1:316	si_a639	TRINITY_DN169_c2_g1	305	325	316	-23.60	-15.90	0.673728813559322	5.5	2-5,324-321;7-21,319-305	1-1,325-325[UP5];6-6,320-320[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AUAUAUUAUUUAAAAUGAUCA&CGAUUUUUUUGAGUAAUAUAU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN169_c2_g1_316_TPlot.pdf
TRINITY_DN169_c2_g1:530	si_s34	TRINITY_DN169_c2_g1	519	537	530	-23.30	-16.10	0.690987124463519	6.5	1-5,537-533;9-21,531-519	6-8,532-532[AILq]	(((((((((((((.--(((((&)))))...)))))))))))))	CGAUUAUUAAAGAG--AGUUG&CAACUAAAUCUUUAAUAAUUG	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN169_c2_g1_530_TPlot.pdf
TRINITY_DN1700_c0_g1:274	si_a319	TRINITY_DN1700_c0_g1	263	283	274	-22.40	-15.60	0.696428571428572	7	1-7,283-277;9-19,275-265	8-8,276-276[SIL];20-21,264-263[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	CCUGAGAAAAUUAAGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	2	0.999987009841749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1700_c0_g1_274_TPlot.pdf
TRINITY_DN1700_c0_g1:275	si_a318	TRINITY_DN1700_c0_g1	264	284	275	-22.50	-15.60	0.693333333333333	7	2-8,283-277;10-20,275-265	1-1,284-284[UP5];9-9,276-276[SIL];21-21,264-264[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	CUGAGAAAAUUAAGGAUGAAA&AUUUAUCCAUGAUUUUUUUAU	2	0.999979918334748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1700_c0_g1_275_TPlot.pdf
TRINITY_DN1700_c0_g1:280	si_a67	TRINITY_DN1700_c0_g1	268	289	280	-27.20	-18.00	0.661764705882353	7.5	1-10,289-280;13-15,276-274;17-21,272-268	11-12,279-277[AILt];16-16,273-273[SIL]	(((((.(((...((((((((((&))))))))))-..))).)))))	GAAAAUUAAGGAUGAAAGAAGC&GCUUCUUUCA-AAUUGUUUUUC	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1700_c0_g1_280_TPlot.pdf
TRINITY_DN1700_c0_g1:419	si_a787	TRINITY_DN1700_c0_g1	408	428	419	-26.30	-17.20	0.653992395437262	7	1-5,428-424;8-13,421-416;15-20,414-409	6-7,423-422[SIL];14-14,415-415[SIL];21-21,408-408[UP3]	.((((((.((((((..(((((&)))))..)))))).)))))).	AGGAAAAAAGAGAACAAGAAG&CUUCUAUUUUUCUAUUUUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1700_c0_g1_419_TPlot.pdf
TRINITY_DN1700_c0_g1:420	si_a786	TRINITY_DN1700_c0_g1	409	429	420	-26.60	-18.10	0.680451127819549	6	1-6,429-424;9-14,421-416;16-21,414-409	7-8,423-422[SIL];15-15,415-415[SIL]	((((((.((((((..((((((&))))))..)))))).))))))	GGAAAAAAGAGAACAAGAAGA&UCUUCUAUUUUUCUAUUUUCC	2	0.99999929404714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1700_c0_g1_420_TPlot.pdf
TRINITY_DN17013_c0_g2:94	si_s444	TRINITY_DN17013_c0_g2	83	103	94	-22.80	-15.20	0.666666666666667	6	1-14,103-90;16-18,88-86	15-15,89-89[SIL];19-21,85-83[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	AAAGUUCUUGUAUAUAAUGUG&CAUAUUAUAUAUAACAACAAU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN17013_c0_g2_94_TPlot.pdf
TRINITY_DN17013_c0_g2:96	si_s442	TRINITY_DN17013_c0_g2	85	105	96	-23.80	-16.70	0.701680672268908	4.5	2-16,104-90;18-20,88-86	1-1,105-105[UP5];17-17,89-89[SIL];21-21,85-85[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AGUUCUUGUAUAUAAUGUGUC&UACAUAUUAUAUAUAACAACA	0	0.0261672870135716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN17013_c0_g2_96_TPlot.pdf
TRINITY_DN17019_c0_g2:965	si_s807	TRINITY_DN17019_c0_g2	954	977	965	-28.90	-18.90	0.653979238754325	12	1-9,977-969;10-18,965-957	x-x,968-966[BULt];19-21,956-954[UP3]	...(((((((((...(((((((((&)))))))))---)))))))))...	GGUGGAAGGGUGAAAAUGAAGAUA&UAUCUUCGU---UACCUUUUCUUA	4	0.999999999999806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN17019_c0_g2_965_TPlot.pdf
TRINITY_DN1701_c0_g1:3698	si_s776	TRINITY_DN1701_c0_g1	3687	3707	3698	-25.10	-17.70	0.705179282868526	9.5	1-14,3707-3694	15-21,3693-3687[UP3]	.......((((((((((((((&)))))))))))))).......	UCGUCAAGUAGCAGUAGUGAU&AUUACUAUUGCUAUAAAACAA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN1701_c0_g1_3698_TPlot.pdf
TRINITY_DN1701_c0_g1:3700	si_s774	TRINITY_DN1701_c0_g1	3689	3709	3700	-24.70	-18.60	0.753036437246964	8.5	2-16,3708-3694	1-1,3709-3709[UP5];17-21,3693-3689[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GUCAAGUAGCAGUAGUGAUUC&UAAUUACUAUUGCUAUAAAAC	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN1701_c0_g1_3700_TPlot.pdf
TRINITY_DN1701_c0_g1:3701	si_s773	TRINITY_DN1701_c0_g1	3690	3710	3701	-23.10	-18.60	0.805194805194805	9.5	3-17,3708-3694	1-2,3710-3709[UP5];18-21,3693-3690[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCAAGUAGCAGUAGUGAUUCG&UUAAUUACUAUUGCUAUAAAA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN1701_c0_g1_3701_TPlot.pdf
TRINITY_DN1701_c0_g1:3702	si_s772	TRINITY_DN1701_c0_g1	3691	3711	3702	-23.20	-18.60	0.801724137931035	10.5	4-18,3708-3694	1-3,3711-3709[UP5];19-21,3693-3691[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAAGUAGCAGUAGUGAUUCGG&AUUAAUUACUAUUGCUAUAAA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN1701_c0_g1_3702_TPlot.pdf
TRINITY_DN1701_c0_g1:3704	si_s770	TRINITY_DN1701_c0_g1	3693	3710	3704	-26.60	-19.70	0.740601503759398	9	1-3,3710-3708;7-20,3707-3694	4-6,x-x[BULq];21-21,3693-3693[UP3]	.((((((((((((((---(((&)))...)))))))))))))).	AGUAGCAGUAGUGAU---UCG&CGAUUAAUUACUAUUGCUAUA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN1701_c0_g1_3704_TPlot.pdf
TRINITY_DN1701_c0_g1:3705	si_s769	TRINITY_DN1701_c0_g1	3694	3711	3705	-27.00	-19.40	0.718518518518518	9	2-4,3710-3708;8-21,3707-3694	1-1,3711-3711[UP5];5-7,x-x[BULq]	((((((((((((((---(((.&.)))...))))))))))))))	GUAGCAGUAGUGAU---UCGG&ACGAUUAAUUACUAUUGCUAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN1701_c0_g1_3705_TPlot.pdf
TRINITY_DN1701_c0_g1:3706	si_s768	TRINITY_DN1701_c0_g1	3695	3712	3706	-26.80	-18.10	0.675373134328358	10.5	3-5,3710-3708;9-21,3707-3695	1-2,3712-3711[UP5];6-8,x-x[BULq]	(((((((((((((---(((..&..)))...)))))))))))))	UAGCAGUAGUGAU---UCGGA&AACGAUUAAUUACUAUUGCUA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN1701_c0_g1_3706_TPlot.pdf
TRINITY_DN1701_c0_g1:3961	si_a153	TRINITY_DN1701_c0_g1	3948	3970	3961	-28.70	-19.70	0.686411149825784	7	1-15,3970-3956;17-19,3952-3950	16-16,3955-3953[AILt];20-21,3949-3948[UP3]	..(((...(((((((((((((((&)))))))))))))))--.)))..	AGAGAAUCUGAUCUUGAAACAAC&GUUGUUUUAAGGUCA--AUCUAU	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN1701_c0_g1_3961_TPlot.pdf
TRINITY_DN1701_c0_g1:3964	si_a150	TRINITY_DN1701_c0_g1	3953	3973	3964	-29.90	-21.30	0.712374581939799	6.5	2-18,3972-3956	1-1,3973-3973[UP5];19-21,3955-3953[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUCUGAUCUUGAAACAACAGA&GUUGUUGUUUUAAGGUCAAUC	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN1701_c0_g1_3964_TPlot.pdf
TRINITY_DN1701_c0_g1:3965	si_a149	TRINITY_DN1701_c0_g1	3954	3974	3965	-29.40	-21.30	0.724489795918367	7.5	3-19,3972-3956	1-2,3974-3973[UP5];20-21,3955-3954[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UCUGAUCUUGAAACAACAGAA&CGUUGUUGUUUUAAGGUCAAU	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1701_c0_g1_3965_TPlot.pdf
TRINITY_DN1701_c0_g1:3966	si_a148	TRINITY_DN1701_c0_g1	3955	3975	3966	-30.30	-21.30	0.702970297029703	8	4-20,3972-3956	1-3,3975-3973[UP5];21-21,3955-3955[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUGAUCUUGAAACAACAGAAA&UCGUUGUUGUUUUAAGGUCAA	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN1701_c0_g1_3966_TPlot.pdf
TRINITY_DN1701_c0_g1:3968	si_a146	TRINITY_DN1701_c0_g1	3957	3977	3968	-29.70	-19.50	0.656565656565657	11	6-21,3972-3957	1-5,3977-3973[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUCUUGAAACAACAGAAAGU&AAUCGUUGUUGUUUUAAGGUC	3	0.999999884316333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN1701_c0_g1_3968_TPlot.pdf
TRINITY_DN1701_c0_g1:4156	si_s81	TRINITY_DN1701_c0_g1	4144	4164	4156	-28.90	-19.80	0.685121107266436	6	1-7,4164-4158;9-18,4157-4148;20-21,4145-4144	8-8,x-x[BULq];19-19,4147-4146[AILt]	((..((((((((((-(((((((&))))))).))))))))))-.))	AGCUGGAGGAAAGG-AAGAAGA&UUUUCUUUCCUUUCUUCU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1701_c0_g1_4156_TPlot.pdf
TRINITY_DN1701_c0_g1:4158	si_s78	TRINITY_DN1701_c0_g1	4148	4167	4158	-26.20	-22.50	0.858778625954199	4	1-10,4167-4158;12-21,4157-4148	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	GGAGGAAAGG-AAGAAGAAAA&UUUUUUUCUUUCCUUUCUUCU	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1701_c0_g1_4158_TPlot.pdf
TRINITY_DN1701_c0_g1:4159	si_s77	TRINITY_DN1701_c0_g1	4149	4168	4159	-25.50	-22.30	0.874509803921569	3.5	1-11,4168-4158;13-21,4157-4149	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GAGGAAAGG-AAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1701_c0_g1_4159_TPlot.pdf
TRINITY_DN17024_c0_g1:2811	si_a792	TRINITY_DN17024_c0_g1	2800	2820	2811	-27.60	-18.68	0.676811594202898	7.5	1-7,2820-2814;11-20,2810-2801	8-10,2813-2811[SIL];21-21,2800-2800[UP3]	.((((((((((...(((((((&)))))))...)))))))))).	AGGGUUGGAAAUACGAAAAAU&AUUUUUCUAUUUUCCAAUCCG	2	0.997119207794828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN17024_c0_g1_2811_TPlot.pdf
TRINITY_DN17024_c0_g1:2812	si_a791	TRINITY_DN17024_c0_g1	2801	2821	2812	-26.50	-18.28	0.689811320754717	7.5	2-8,2820-2814;12-21,2810-2801	1-1,2821-2821[UP5];9-11,2813-2811[SIL]	((((((((((...(((((((.&.)))))))...))))))))))	GGGUUGGAAAUACGAAAAAUC&UAUUUUUCUAUUUUCCAAUCC	2	0.994143829972238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN17024_c0_g1_2812_TPlot.pdf
TRINITY_DN17024_c0_g1:2878	si_a68	TRINITY_DN17024_c0_g1	2867	2889	2878	-25.40	-17.66	0.695275590551181	12.5	1-8,2889-2882;12-20,2876-2868	9-11,2881-2877[AILt];21-21,2867-2867[UP3]	.(((((((((.....((((((((&))))))))--...))))))))).	GGAAGGGCAAAUCUGGAAAGAAG&CUUCUUUC--AAAUUGUUUUUCA	3	0.999999124105573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN17024_c0_g1_2878_TPlot.pdf
TRINITY_DN17024_c0_g1:2886	si_s76	TRINITY_DN17024_c0_g1	2875	2895	2886	-23.60	-15.50	0.656779661016949	10	2-15,2894-2881	1-1,2895-2895[UP5];16-21,2880-2875[UP3]	......((((((((((((((.&.))))))))))))))......	AAAUCUGGAAAGAAGGAGAAA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN17024_c0_g1_2886_TPlot.pdf
TRINITY_DN17024_c0_g1:2889	si_s73	TRINITY_DN17024_c0_g1	2878	2901	2889	-24.00	-16.80	0.7	13	1-4,2901-2898;5-18,2894-2881	x-x,2897-2895[BULt];19-21,2880-2878[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	UCUGGAAAGAAGGAGAAAGUUGGA&UCUA---UUUUUUUUCUUUCCUUU	2	0.999999999999847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN17024_c0_g1_2889_TPlot.pdf
TRINITY_DN17024_c0_g1:2890	si_s72	TRINITY_DN17024_c0_g1	2879	2902	2890	-24.10	-17.70	0.734439834024896	12	1-5,2902-2898;6-19,2894-2881	x-x,2897-2895[BULt];20-21,2880-2879[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	CUGGAAAGAAGGAGAAAGUUGGAA&UUCUA---UUUUUUUUCUUUCCUU	2	0.999999673677147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN17024_c0_g1_2890_TPlot.pdf
TRINITY_DN17024_c0_g1:2891	si_s71	TRINITY_DN17024_c0_g1	2880	2903	2891	-25.70	-17.90	0.696498054474708	12	2-6,2902-2898;7-20,2894-2881	1-1,2903-2903[UP5];x-x,2897-2895[BULt];21-21,2880-2880[UP3]	.((((((((((((((...(((((.&.)))))---)))))))))))))).	UGGAAAGAAGGAGAAAGUUGGAAA&CUUCUA---UUUUUUUUCUUUCCU	2	0.999999999963944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN17024_c0_g1_2891_TPlot.pdf
TRINITY_DN17024_c0_g1:2892	si_s70	TRINITY_DN17024_c0_g1	2881	2904	2892	-25.80	-17.50	0.678294573643411	12.5	3-7,2902-2898;8-21,2894-2881	1-2,2904-2903[UP5];x-x,2897-2895[BULt]	((((((((((((((...(((((..&..)))))---))))))))))))))	GGAAAGAAGGAGAAAGUUGGAAAU&ACUUCUA---UUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN17024_c0_g1_2892_TPlot.pdf
TRINITY_DN17024_c0_g1:2895	si_s82	TRINITY_DN17024_c0_g1	2884	2903	2895	-28.90	-19.10	0.660899653979239	7.5	1-5,2903-2899;9-21,2896-2884	6-8,2898-2897[AILq]	(((((((((((((..-(((((&)))))...)))))))))))))	AAGAAGGAGAAAGUU-GGAAA&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN17024_c0_g1_2895_TPlot.pdf
TRINITY_DN17025_c0_g2:1068	si_s158	TRINITY_DN17025_c0_g2	1055	1077	1068	-44.90	-29.60	0.65924276169265	9.5	1-5,1077-1073;7-11,1071-1067;12-20,1064-1056	6-6,1072-1072[SIL];x-x,1066-1065[BULt];21-21,1055-1055[UP3]	.(((((((((..(((((.(((((&))))).)))))--))))))))).	CACCCUUGGCGACAUGGUUCUCC&GGAGGUUCAUG--GCCAGGGGUA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN17025_c0_g2_1068_TPlot.pdf
TRINITY_DN17025_c0_g2:1069	si_s157	TRINITY_DN17025_c0_g2	1056	1078	1069	-45.20	-30.50	0.674778761061947	8.5	1-6,1078-1073;8-12,1071-1067;13-21,1064-1056	7-7,1072-1072[SIL];x-x,1066-1065[BULt]	(((((((((..(((((.((((((&)))))).)))))--)))))))))	ACCCUUGGCGACAUGGUUCUCCU&AGGAGGUUCAUG--GCCAGGGGU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN17025_c0_g2_1069_TPlot.pdf
TRINITY_DN17025_c0_g2:173	si_a112	TRINITY_DN17025_c0_g2	161	182	173	-26.20	-17.30	0.66030534351145	13.5	5-13,178-170;15-19,167-163	1-4,182-179[UP5];14-14,169-168[AILt];20-21,162-161[UP3]	..(((((..(((((((((....&....)))))))))-.)))))..	CGGAGACCUGGCUCGUGUGUCU&UAAAAUACGAGCU-UGUUUUAU	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN17025_c0_g2_173_TPlot.pdf
TRINITY_DN1702_c0_g1:800	si_s79	TRINITY_DN1702_c0_g1	789	809	800	-26.20	-20.80	0.793893129770992	8.5	2-18,808-792	1-1,809-809[UP5];19-21,791-789[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACAGAGAAAGGGAAGAGGAGG&UUUUUUCUUUCCUUUCUUCUU	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1702_c0_g1_800_TPlot.pdf
TRINITY_DN1702_c0_g1:809	si_s72	TRINITY_DN1702_c0_g1	797	818	809	-24.10	-20.60	0.854771784232365	5.5	1-17,818-802;18-21,800-797	x-x,801-801[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	AGGGAAGAGGAGGAGAAUAGAA&UUCUAUUUUUUUUCUUU-CCUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1702_c0_g1_809_TPlot.pdf
TRINITY_DN1702_c0_g1:810	si_s71	TRINITY_DN1702_c0_g1	798	819	810	-25.70	-20.00	0.778210116731518	6.5	2-18,818-802;19-21,800-798	1-1,819-819[UP5];x-x,801-801[BULt]	(((.(((((((((((((((((.&.)))))))))))))))))-)))	GGGAAGAGGAGGAGAAUAGAAU&CUUCUAUUUUUUUUCUUU-CCU	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1702_c0_g1_810_TPlot.pdf
TRINITY_DN1702_c0_g1:812	si_a785	TRINITY_DN1702_c0_g1	800	822	812	-25.90	-18.90	0.72972972972973	6	1-3,822-820;4-15,818-807;17-21,804-800	x-x,819-819[BULt];16-16,806-805[AILt]	(((((..((((((((((((.(((&)))-))))))))))))-.)))))	GAAGAGGAGGAGAAUAGAAUGAG&CUC-UUCUAUUUUUCU-AUUUUC	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1702_c0_g1_812_TPlot.pdf
TRINITY_DN1702_c0_g1:819	si_a786	TRINITY_DN1702_c0_g1	808	828	819	-26.60	-20.90	0.785714285714286	6.5	1-6,828-823;8-9,821-820;11-21,818-808	7-7,822-822[SIL];10-10,819-819[SIL]	(((((((((((.((.((((((&)))))).)).)))))))))))	GGAGAAUAGAAUGAGAGAGGA&UCUUCUAUUUUUCUAUUUUCC	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1702_c0_g1_819_TPlot.pdf
TRINITY_DN1702_c0_g1:876	si_a635	TRINITY_DN1702_c0_g1	859	885	876	-26.10	-18.70	0.716475095785441	16	1-11,885-875;12-18,868-862	x-x,874-869[BULt];19-21,861-859[UP3]	...(((((((......(((((((((((&)))))))))))------)))))))...	AAAACUCAAAGAGGAAGAAAUCGACAU&AUGUCGAUUUU------UUUGAGUAAU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1702_c0_g1_876_TPlot.pdf
TRINITY_DN1702_c0_g1:879	si_a632	TRINITY_DN1702_c0_g1	862	888	879	-26.10	-20.40	0.781609195402299	7.5	2-14,887-875;15-21,868-862	1-1,888-888[UP5];x-x,874-869[BULt]	(((((((......(((((((((((((.&.)))))))))))))------)))))))	ACUCAAAGAGGAAGAAAUCGACAUAAC&AUUAUGUCGAUUUU------UUUGAGU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1702_c0_g1_879_TPlot.pdf
TRINITY_DN1702_c0_g1:882	si_a629	TRINITY_DN1702_c0_g1	871	889	882	-26.30	-18.60	0.707224334600761	6	1-3,889-887;6-20,886-872	4-5,x-x[BULq];21-21,871-871[UP3]	.(((((((((((((((--(((&)))..))))))))))))))).	GGAAGAAAUCGACAUA--ACG&CGUAUUAUGUCGAUUUUUUUG	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN1702_c0_g1_882_TPlot.pdf
TRINITY_DN17038_c0_g1:1797	si_s77	TRINITY_DN17038_c0_g1	1786	1808	1797	-25.50	-20.70	0.811764705882353	7.5	1-9,1808-1800;10-21,1797-1786	x-x,1799-1798[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	GAAGAAGGGGGAACGAAAAAAGA&UUUUUUUUC--UUUCCUUUCUUC	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN17038_c0_g1_1797_TPlot.pdf
TRINITY_DN17038_c0_g1:2808	si_s125	TRINITY_DN17038_c0_g1	2798	2817	2808	-27.20	-17.80	0.654411764705882	10	4-15,2814-2803;17-18,2802-2801	1-3,2817-2815[UP5];16-16,x-x[BULq];19-21,2800-2798[UP3]	...((-((((((((((((...&...)))))))))))).))...	UGCGA-UCAACUCUUCUGCCG&AAAUAGAAGAGUUGAAUCAAU	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN17038_c0_g1_2808_TPlot.pdf
TRINITY_DN17038_c0_g1:3271	si_s797	TRINITY_DN17038_c0_g1	3262	3280	3271	-30.00	-20.20	0.673333333333333	6.5	1-13,3280-3268;16-20,3267-3263	14-15,x-x[BULq];21-21,3262-3262[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	CGACGA--GUGAAGUACGAGU&GCUCGUAUUUUAUCUUCGUUA	2	0.999621165911964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN17038_c0_g1_3271_TPlot.pdf
TRINITY_DN17038_c0_g1:485	si_s890	TRINITY_DN17038_c0_g1	474	494	485	-29.50	-19.90	0.674576271186441	17.5	9-20,486-475	1-8,494-487[UP5];21-21,474-474[UP3]	.((((((((((((........&........)))))))))))).	AGGAGGGGAAGCCAGCGAUUG&AAUAAAUAGGCUUUCUCUUCA	2	0.993689766352297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN17038_c0_g1_485_TPlot.pdf
TRINITY_DN17038_c0_g1:486	si_s889	TRINITY_DN17038_c0_g1	475	495	486	-28.80	-19.40	0.673611111111111	18.5	10-21,486-475	1-9,495-487[UP5]	((((((((((((.........&.........))))))))))))	GGAGGGGAAGCCAGCGAUUGC&AAAUAAAUAGGCUUUCUCUUC	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN17038_c0_g1_486_TPlot.pdf
TRINITY_DN17038_c0_g2:766	si_a750	TRINITY_DN17038_c0_g2	754	776	766	-39.70	-26.40	0.664987405541562	11	1-2,776-775;3-6,773-770;9-12,767-764;13-20,762-755	x-x,774-774[BULt];7-8,769-768[SIL];x-x,763-763[BULt];21-21,754-754[UP3]	.((((((((.((((..((((.((&))-))))..))))-)))))))).	UGCUCAAAGUGAGGGGCGUGAGC&GC-CAUGAACCUC-CUUUGGGUU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN17038_c0_g2_766_TPlot.pdf
TRINITY_DN1703_c1_g1:1326	si_s896	TRINITY_DN1703_c1_g1	1315	1340	1326	-31.60	-20.70	0.65506329113924	16.5	3-9,1338-1332;10-21,1326-1315	1-2,1340-1339[UP5];x-x,1331-1327[BULt]	((((((((((((.....(((((((..&..)))))))-----))))))))))))	UGAAGUUGAGGAAUACUGGAAGUCGC&UAGGCUUUC-----UCUUCAAUUUCA	4	0.999999634212687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN1703_c1_g1_1326_TPlot.pdf
TRINITY_DN17046_c0_g1:206	si_s92	TRINITY_DN17046_c0_g1	194	216	206	-34.90	-24.80	0.710601719197708	6.5	1-4,216-213;5-10,211-206;11-21,204-194	x-x,212-212[BULt];x-x,205-205[BULt]	(((((((((((.((((((.((((&))))-))))))-)))))))))))	AUCUGAAGCGAGAGGGGAUAGAA&UUCU-UCUUCU-UCGCUUCGGAU	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN17046_c0_g1_206_TPlot.pdf
TRINITY_DN1704_c1_g1:1582	si_s863	TRINITY_DN1704_c1_g1	1571	1592	1582	-40.10	-26.30	0.655860349127182	8.5	1-8,1592-1585;9-18,1583-1574	x-x,1584-1584[BULt];19-21,1573-1571[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	UUGAGGGCUGGUACGGUUUGGG&CCUAGACC-UACCGGUCUUAGA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s863_TRINITY_DN1704_c1_g1_1582_TPlot.pdf
TRINITY_DN1704_c1_g1:1583	si_s862	TRINITY_DN1704_c1_g1	1572	1593	1583	-40.10	-26.30	0.655860349127182	8.5	2-9,1592-1585;10-19,1583-1574	1-1,1593-1593[UP5];x-x,1584-1584[BULt];20-21,1573-1572[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	UGAGGGCUGGUACGGUUUGGGU&UCCUAGACC-UACCGGUCUUAG	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s862_TRINITY_DN1704_c1_g1_1583_TPlot.pdf
TRINITY_DN1704_c1_g1:1586	si_s860	TRINITY_DN1704_c1_g1	1574	1595	1586	-40.50	-26.40	0.651851851851852	8.5	2-2,1594-1594;4-11,1592-1585;12-21,1583-1574	1-1,1595-1595[UP5];3-3,1593-1593[SIL];x-x,1584-1584[BULt]	((((((((((.((((((((.(.&.).))))))))-))))))))))	AGGGCUGGUACGGUUUGGGUGA&ACUCCUAGACC-UACCGGUCUU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s860_TRINITY_DN1704_c1_g1_1586_TPlot.pdf
TRINITY_DN1704_c1_g1:467	si_a235	TRINITY_DN1704_c1_g1	456	480	467	-33.60	-22.56	0.671428571428571	15	1-6,480-475;8-9,473-472;12-21,465-456	7-7,474-474[SIL];10-11,471-466[AILt]	((((((((((......((.((((((&)))))).))----..))))))))))	GGGGAUCGAAAUGGAGGACUAUGGA&UCUAUAAUC----AAUUCGAUCCCC	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a235_TRINITY_DN1704_c1_g1_467_TPlot.pdf
TRINITY_DN17058_c1_g1:181	si_a623	TRINITY_DN17058_c1_g1	170	190	181	-33.10	-25.70	0.776435045317221	3.5	1-14,190-177;17-21,174-170	15-16,176-175[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	AGUCGCGAUAAUAUGCCUAGU&ACUAGGCGUAUUAUGUCGAUU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN17058_c1_g1_181_TPlot.pdf
TRINITY_DN17058_c1_g1:182	si_a622	TRINITY_DN17058_c1_g1	171	191	182	-35.10	-25.30	0.720797720797721	4.5	2-15,190-177;18-21,174-171	1-1,191-191[UP5];16-17,176-175[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	GUCGCGAUAAUAUGCCUAGUG&GACUAGGCGUAUUAUGUCGAU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN17058_c1_g1_182_TPlot.pdf
TRINITY_DN1705_c1_g1:1105	si_s92	TRINITY_DN1705_c1_g1	1093	1114	1105	-34.90	-26.40	0.756446991404012	8	3-13,1112-1102;14-19,1100-1095	1-2,1114-1113[UP5];x-x,1101-1101[BULt];20-21,1094-1093[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	AACCGAAGACGAGGAGGAAGUU&UUCUUCUUCUUCG-CUUCGGAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1705_c1_g1_1105_TPlot.pdf
TRINITY_DN17064_c1_g1:141	si_a813	TRINITY_DN17064_c1_g1	130	154	141	-32.90	-21.80	0.662613981762918	14	3-5,152-150;6-19,145-132	1-2,154-153[UP5];x-x,149-146[BULt];20-21,131-130[UP3]	..((((((((((((((....(((..&..)))----))))))))))))))..	CGCCUUUCUUCUUCUUAAGGUGCCU&AAGCG----AAGAAGAAGAAAGGAA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN17064_c1_g1_141_TPlot.pdf
TRINITY_DN1706_c0_g1:456	si_a352	TRINITY_DN1706_c0_g1	445	465	456	-22.50	-15.20	0.675555555555556	16	9-21,457-445	1-8,465-458[UP5]	(((((((((((((........&........)))))))))))))	GAUCAAAAUGGAAAACGACAA&AAUAUUAAUUCUAUUUUGAUC	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN1706_c0_g1_456_TPlot.pdf
TRINITY_DN1706_c0_g1:4648	si_s72	TRINITY_DN1706_c0_g1	4638	4657	4648	-24.10	-16.60	0.688796680497925	5	1-7,4657-4651;9-16,4649-4642;18-21,4641-4638	8-8,4650-4650[SIL];17-17,x-x[BULq]	((((-((((((((.(((((((&))))))).)))))))).))))	AAGG-AAGAAAAGUAAUAGGA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1706_c0_g1_4648_TPlot.pdf
TRINITY_DN1706_c0_g1:4649	si_s71	TRINITY_DN1706_c0_g1	4639	4658	4649	-25.70	-18.00	0.700389105058366	5	1-8,4658-4651;10-17,4649-4642;19-21,4641-4639	9-9,4650-4650[SIL];18-18,x-x[BULq]	(((-((((((((.((((((((&)))))))).)))))))).)))	AGG-AAGAAAAGUAAUAGGAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999806497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1706_c0_g1_4649_TPlot.pdf
TRINITY_DN1706_c0_g1:4650	si_s70	TRINITY_DN1706_c0_g1	4639	4659	4650	-25.80	-18.20	0.705426356589147	6.5	2-9,4658-4651;11-20,4649-4640	1-1,4659-4659[UP5];10-10,4650-4650[SIL];21-21,4639-4639[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	AGGAAGAAAAGUAAUAGGAGC&ACUUCUAUUUUUUUUCUUUCC	2	0.999999449610897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1706_c0_g1_4650_TPlot.pdf
TRINITY_DN1706_c0_g1:4651	si_s69	TRINITY_DN1706_c0_g1	4640	4660	4651	-23.40	-18.20	0.777777777777778	7.5	3-10,4658-4651;12-21,4649-4640	1-2,4660-4659[UP5];11-11,4650-4650[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	GGAAGAAAAGUAAUAGGAGCC&AACUUCUAUUUUUUUUCUUUC	2	0.996972158701439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1706_c0_g1_4651_TPlot.pdf
TRINITY_DN1706_c0_g1:4652	si_s68	TRINITY_DN1706_c0_g1	4641	4661	4652	-23.10	-15.90	0.688311688311688	9	4-11,4658-4651;13-21,4649-4641	1-3,4661-4659[UP5];12-12,4650-4650[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAAGAAAAGUAAUAGGAGCCC&CAACUUCUAUUUUUUUUCUUU	2	0.999999997223997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1706_c0_g1_4652_TPlot.pdf
TRINITY_DN1706_c0_g1:4740	si_a470	TRINITY_DN1706_c0_g1	4729	4749	4740	-21.30	-14.80	0.694835680751174	8.5	3-16,4747-4734	1-2,4749-4748[UP5];17-21,4733-4729[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACAACCAGUAAUUACAUAUAG&UAAUAUGUAAUUAUUGUUAUA	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN1706_c0_g1_4740_TPlot.pdf
TRINITY_DN1706_c0_g1:4741	si_a469	TRINITY_DN1706_c0_g1	4730	4750	4741	-21.10	-14.80	0.701421800947867	9.5	4-17,4747-4734	1-3,4750-4748[UP5];18-21,4733-4730[UP3]	....((((((((((((((...&...))))))))))))))....	CAACCAGUAAUUACAUAUAGC&AUAAUAUGUAAUUAUUGUUAU	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN1706_c0_g1_4741_TPlot.pdf
TRINITY_DN1706_c0_g1:4745	si_a465	TRINITY_DN1706_c0_g1	4734	4754	4745	-20.90	-14.50	0.69377990430622	13.5	8-21,4747-4734	1-7,4754-4748[UP5]	((((((((((((((.......&.......))))))))))))))	CAGUAAUUACAUAUAGCUCCG&AUAUAUAAUAUGUAAUUAUUG	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN1706_c0_g1_4745_TPlot.pdf
TRINITY_DN1706_c0_g1:4897	si_a785	TRINITY_DN1706_c0_g1	4879	4906	4897	-25.90	-18.20	0.702702702702703	16.5	2-10,4905-4897;11-21,4889-4879	1-1,4906-4906[UP5];x-x,4896-4890[BULt]	(((((((((((.......(((((((((.&.)))))))))-------)))))))))))	GAAAGUAGAAAGAACUUUAGUAGAAGAU&CUCUUCUAUU-------UUUCUAUUUUC	4	0.999999998797842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1706_c0_g1_4897_TPlot.pdf
TRINITY_DN17070_c0_g1:28	si_a776	TRINITY_DN17070_c0_g1	18	37	28	-27.10	-20.40	0.752767527675277	5	1-12,37-26;15-20,24-19	13-14,25-25[AILq];21-21,18-18[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	UGAAUGGU-GAGUUGAGUCAA&UUGAUUCAACUCUUCUAUUUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN17070_c0_g1_28_TPlot.pdf
TRINITY_DN17070_c0_g1:30	si_a774	TRINITY_DN17070_c0_g1	20	39	30	-29.20	-20.90	0.715753424657534	4.5	2-14,38-26;17-21,24-20	1-1,39-39[UP5];15-16,25-25[AILq]	(((((.-(((((((((((((.&.)))))))))))))..)))))	AAUGGU-GAGUUGAGUCAAUA&GAUUGAUUCAACUCUUCUAUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN17070_c0_g1_30_TPlot.pdf
TRINITY_DN17070_c0_g1:38	si_a766	TRINITY_DN17070_c0_g1	27	51	38	-30.50	-21.90	0.718032786885246	10.5	1-9,51-43;10-21,38-27	x-x,42-39[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	AGUUGAGUCAAUAAGAUAAAAAUCC&GGGUUUUUG----AUUGAUUCAACU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN17070_c0_g1_38_TPlot.pdf
TRINITY_DN17074_c0_g1:232	si_s85	TRINITY_DN17074_c0_g1	220	242	232	-33.80	-23.00	0.680473372781065	6	1-8,242-235;9-15,233-227;16-19,225-222	x-x,234-234[BULt];x-x,226-226[BULt];20-21,221-220[UP3]	..((((.(((((((.((((((((&))))))))-)))))))-))))..	AAGAAGAAAGAAGAGGAGGAAAG&CUUUCCUU-UCUUCUU-CUUCGC	4	0.999999999999584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN17074_c0_g1_232_TPlot.pdf
TRINITY_DN17074_c0_g1:234	si_s80	TRINITY_DN17074_c0_g1	219	243	234	-28.20	-22.10	0.783687943262411	11	1-10,243-234;11-21,229-219	x-x,233-230[BULt]	(((((((((((....((((((((((&))))))))))----)))))))))))	GAAGAAGAAAGAAGAGGAGGAAAGA&UUUUUCUUUC----CUUUCUUCUUC	4	0.999988024589162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN17074_c0_g1_234_TPlot.pdf
TRINITY_DN1707_c0_g1:1061	si_s188	TRINITY_DN1707_c0_g1	1051	1069	1061	-28.20	-18.80	0.666666666666667	7.5	1-9,1069-1061;12-21,1060-1051	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GUUCCAAGAU--UUGUUGCUU&GAGUAACGAUUAUUUUGGAAU	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN1707_c0_g1_1061_TPlot.pdf
TRINITY_DN1707_c1_g1:4396	si_a484	TRINITY_DN1707_c1_g1	4379	4405	4396	-27.30	-19.16	0.701831501831502	15	1-12,4405-4394;14-21,4386-4379	13-13,4393-4387[AILt]	((((((((.......((((((((((((&))))))))))))------.))))))))	GACGACGUCUCAUCCUUCUGUAUAACA&UGUUAUAUAGAA------UAUGUCGUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN1707_c1_g1_4396_TPlot.pdf
TRINITY_DN1707_c1_g1:5067	si_a485	TRINITY_DN1707_c1_g1	5050	5076	5067	-26.60	-18.36	0.690225563909774	17	1-11,5076-5066;13-20,5058-5051	12-12,5065-5059[AILt];21-21,5050-5050[UP3]	.((((((((.......(((((((((((&)))))))))))------.)))))))).	UGACGACGUCUCAUCCUUCUGUAUAAC&GUUAUAUAGAA------UAUGUCGUUU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN1707_c1_g1_5067_TPlot.pdf
TRINITY_DN1707_c1_g1:5068	si_a484	TRINITY_DN1707_c1_g1	5051	5077	5068	-27.30	-19.16	0.701831501831502	15	1-12,5077-5066;14-21,5058-5051	13-13,5065-5059[AILt]	((((((((.......((((((((((((&))))))))))))------.))))))))	GACGACGUCUCAUCCUUCUGUAUAACA&UGUUAUAUAGAA------UAUGUCGUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN1707_c1_g1_5068_TPlot.pdf
TRINITY_DN1708_c0_g1:1125	si_s804	TRINITY_DN1708_c0_g1	1114	1134	1125	-27.90	-18.90	0.67741935483871	12.5	6-18,1129-1117;21-21,1114-1114	1-5,1134-1130[UP5];19-20,1116-1115[SIL]	(..(((((((((((((.....&.....)))))))))))))..)	GCUAAGGUGGCGAAGAGAUCU&UUUUAUCUUCGUUACCUUUUC	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN1708_c0_g1_1125_TPlot.pdf
TRINITY_DN1708_c0_g1:3221	si_a193	TRINITY_DN1708_c0_g1	3209	3230	3221	-30.90	-22.20	0.718446601941748	9	1-11,3230-3220;12-15,3218-3215	x-x,3219-3219[BULt];16-21,3214-3209[UP3]	......((((.(((((((((((&)))))))))))-))))......	CUGCACAGUGAAACAGGGAAGG&CUUUCCCUGUU-CACUAAUAAA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN1708_c0_g1_3221_TPlot.pdf
TRINITY_DN1708_c0_g1:646	si_s346	TRINITY_DN1708_c0_g1	635	655	646	-34.40	-22.90	0.665697674418605	10	3-16,653-640	1-2,655-654[UP5];17-21,639-635[UP3]	.....((((((((((((((..&..)))))))))))))).....	UCAGCUCUUUGUCUCUCCGGU&CACGGGGAGAUAAAGAAAUAG	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s346_TRINITY_DN1708_c0_g1_646_TPlot.pdf
TRINITY_DN1708_c0_g1:648	si_s344	TRINITY_DN1708_c0_g1	637	657	648	-33.40	-22.90	0.68562874251497	11.5	5-18,653-640	1-4,657-654[UP5];19-21,639-637[UP3]	...((((((((((((((....&....))))))))))))))...	AGCUCUUUGUCUCUCCGGUCG&UUCACGGGGAGAUAAAGAAAU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN1708_c0_g1_648_TPlot.pdf
TRINITY_DN1708_c0_g1:6957	si_a188	TRINITY_DN1708_c0_g1	6945	6966	6957	-32.00	-21.60	0.675	13	5-14,6962-6953;15-20,6951-6946	1-4,6966-6963[UP5];x-x,6952-6952[BULt];21-21,6945-6945[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	CGGUGAACCGGGGAGGGGGUGG&AAUAUCUUUCCCUG-UUCACUA	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN1708_c0_g1_6957_TPlot.pdf
TRINITY_DN1708_c0_g1:7152	si_s69	TRINITY_DN1708_c0_g1	7141	7162	7152	-23.40	-16.90	0.722222222222222	10	2-7,7161-7156;10-21,7152-7141	1-1,7162-7162[UP5];8-9,7155-7153[AILt]	((((((((((((...((((((.&.))))))-..))))))))))))	GAAGGAGAAGAACUCAGAGGUG&AACUUCU-AUUUUUUUUCUUUC	4	0.999999999999142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1708_c0_g1_7152_TPlot.pdf
TRINITY_DN1708_c0_g1:8635	si_s476	TRINITY_DN1708_c0_g1	8624	8644	8635	-28.40	-19.50	0.686619718309859	11	1-11,8644-8634	12-21,8633-8624[UP3]	..........(((((((((((&)))))))))))..........	UUGUCCAGCCAGGAUCCGUUG&CAACGGAUCCUAUAUUUAUUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN1708_c0_g1_8635_TPlot.pdf
TRINITY_DN1708_c0_g1:8812	si_s302	TRINITY_DN1708_c0_g1	8799	8821	8812	-32.30	-22.26	0.689164086687307	10.5	1-11,8821-8811;15-20,8805-8800	12-14,8810-8806[AILt];21-21,8799-8799[UP3]	.((((((.....(((((((((((&)))))))))))--...)))))).	AACAGAGGAACAUCGCGAUUCCA&UGGAAUUGCGA--AAAUUCUGUC	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s302_TRINITY_DN1708_c0_g1_8812_TPlot.pdf
TRINITY_DN1708_c0_g1:8813	si_s301	TRINITY_DN1708_c0_g1	8800	8822	8813	-30.40	-22.36	0.735526315789474	9.5	2-12,8821-8811;16-21,8805-8800	1-1,8822-8822[UP5];13-15,8810-8806[AILt]	((((((.....(((((((((((.&.)))))))))))--...))))))	ACAGAGGAACAUCGCGAUUCCAC&UUGGAAUUGCGA--AAAUUCUGU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s301_TRINITY_DN1708_c0_g1_8813_TPlot.pdf
TRINITY_DN1708_c0_g1:8814	si_s300	TRINITY_DN1708_c0_g1	8801	8823	8814	-29.70	-21.06	0.709090909090909	9.5	3-13,8821-8811;17-21,8805-8801	1-2,8823-8822[UP5];14-16,8810-8806[AILt]	(((((.....(((((((((((..&..)))))))))))--...)))))	CAGAGGAACAUCGCGAUUCCACA&AUUGGAAUUGCGA--AAAUUCUG	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s300_TRINITY_DN1708_c0_g1_8814_TPlot.pdf
TRINITY_DN1708_c0_g1:8956	si_s842	TRINITY_DN1708_c0_g1	8941	8964	8956	-34.60	-24.90	0.719653179190751	8	1-6,8964-8959;8-16,8958-8950;17-21,8945-8941	7-7,x-x[BULq];x-x,8949-8946[BULt]	(((((....(((((((((-((((((&)))))).)))))))))----)))))	GGUCGGCUUGCUCGCUUC-UUCAGA&UUUGAAAGAAGCGAGU----CGACU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s842_TRINITY_DN1708_c0_g1_8956_TPlot.pdf
TRINITY_DN1708_c0_g1:8957	si_s841	TRINITY_DN1708_c0_g1	8942	8965	8957	-34.00	-24.70	0.726470588235294	7.5	1-7,8965-8959;9-17,8958-8950;18-21,8945-8942	8-8,x-x[BULq];x-x,8949-8946[BULt]	((((....(((((((((-(((((((&))))))).)))))))))----))))	GUCGGCUUGCUCGCUUC-UUCAGAU&AUUUGAAAGAAGCGAGU----CGAC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s841_TRINITY_DN1708_c0_g1_8957_TPlot.pdf
TRINITY_DN1708_c0_g1:8958	si_s840	TRINITY_DN1708_c0_g1	8943	8966	8958	-32.20	-21.80	0.677018633540373	8.5	2-8,8965-8959;10-18,8958-8950;19-21,8945-8943	1-1,8966-8966[UP5];9-9,x-x[BULq];x-x,8949-8946[BULt]	(((....(((((((((-(((((((.&.))))))).)))))))))----)))	UCGGCUUGCUCGCUUC-UUCAGAUC&AAUUUGAAAGAAGCGAGU----CGA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s840_TRINITY_DN1708_c0_g1_8958_TPlot.pdf
TRINITY_DN1708_c0_g1:8959	si_s838	TRINITY_DN1708_c0_g1	8949	8968	8959	-32.20	-21.00	0.652173913043478	9.5	4-10,8965-8959;12-20,8958-8950	1-3,8968-8966[UP5];11-11,x-x[BULq];21-21,8949-8949[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	UGCUCGCUUC-UUCAGAUCCU&ACAAUUUGAAAGAAGCGAGUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s838_TRINITY_DN1708_c0_g1_8959_TPlot.pdf
TRINITY_DN1708_c0_g1:8960	si_s837	TRINITY_DN1708_c0_g1	8950	8969	8960	-30.20	-21.00	0.695364238410596	10.5	5-11,8965-8959;13-21,8958-8950	1-4,8969-8966[UP5];12-12,x-x[BULq]	(((((((((-(((((((....&....))))))).)))))))))	GCUCGCUUC-UUCAGAUCCUU&AACAAUUUGAAAGAAGCGAGU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s837_TRINITY_DN1708_c0_g1_8960_TPlot.pdf
TRINITY_DN1708_c0_g1:9240	si_a722	TRINITY_DN1708_c0_g1	9229	9248	9240	-34.70	-23.30	0.671469740634006	9.5	4-6,9245-9243;8-20,9242-9230	1-3,9248-9246[UP5];7-7,x-x[BULq];21-21,9229-9229[UP3]	.(((((((((((((-(((...&...))).))))))))))))).	CGAGGUGCUCGAGU-ACGUGG&AAUCGUUACUCGGGCAUCUUU	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN1708_c0_g1_9240_TPlot.pdf
TRINITY_DN1708_c0_g1:9241	si_a721	TRINITY_DN1708_c0_g1	9230	9249	9241	-35.10	-23.30	0.663817663817664	10.5	5-7,9245-9243;9-21,9242-9230	1-4,9249-9246[UP5];8-8,x-x[BULq]	(((((((((((((-(((....&....))).)))))))))))))	GAGGUGCUCGAGU-ACGUGGG&UAAUCGUUACUCGGGCAUCUU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN1708_c0_g1_9241_TPlot.pdf
TRINITY_DN1708_c0_g1:9927	si_a105	TRINITY_DN1708_c0_g1	9916	9937	9927	-30.30	-19.80	0.653465346534653	10	2-7,9936-9931;10-19,9927-9918	1-1,9937-9937[UP5];8-9,9930-9928[AILt];20-21,9917-9916[UP3]	..((((((((((...((((((.&.))))))-..))))))))))..	UUGUUCGUGUUUGGCUCUUCGA&ACGAAGA-UAAAAUACGAGCUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a105_TRINITY_DN1708_c0_g1_9927_TPlot.pdf
TRINITY_DN1708_c0_g1:9928	si_a104	TRINITY_DN1708_c0_g1	9917	9938	9928	-30.30	-19.80	0.653465346534653	11	3-8,9936-9931;11-20,9927-9918	1-2,9938-9937[UP5];9-10,9930-9928[AILt];21-21,9917-9917[UP3]	.((((((((((...((((((..&..))))))-..)))))))))).	UGUUCGUGUUUGGCUCUUCGAC&AACGAAGA-UAAAAUACGAGCU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a104_TRINITY_DN1708_c0_g1_9928_TPlot.pdf
TRINITY_DN1708_c0_g2:259	si_a136	TRINITY_DN1708_c0_g2	248	271	259	-25.70	-17.64	0.686381322957198	14	3-6,269-266;8-21,261-248	1-2,271-270[UP5];7-7,265-262[AILt]	((((((((((((((....((((..&..))))---.))))))))))))))	CAGCAGCGAUUAAUCUUCGCUGGA&AAUAGU---AAUUAAUCGUUGUUG	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN1708_c0_g2_259_TPlot.pdf
TRINITY_DN1709_c0_g1:1249	si_s74	TRINITY_DN1709_c0_g1	1237	1259	1249	-25.00	-16.60	0.664	8	1-6,1259-1254;7-15,1252-1244;16-20,1242-1238	x-x,1253-1253[BULt];x-x,1243-1243[BULt];21-21,1237-1237[UP3]	.(((((.(((((((((.((((((&))))))-)))))))))-))))).	CAGAGGAAGAGAGAAGCAAAUGG&CUAUUU-UUUUUCUUU-CCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1709_c0_g1_1249_TPlot.pdf
TRINITY_DN1709_c0_g1:3235	si_s891	TRINITY_DN1709_c0_g1	3224	3244	3235	-29.60	-19.30	0.652027027027027	17.5	9-20,3236-3225	1-8,3244-3237[UP5];21-21,3224-3224[UP3]	.((((((((((((........&........)))))))))))).	GUGAGGAGAGAGCGACACGGA&AUAAAUAGGCUUUCUCUUCAA	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN1709_c0_g1_3235_TPlot.pdf
TRINITY_DN1709_c0_g1:3329	si_s38	TRINITY_DN1709_c0_g1	3318	3338	3329	-22.70	-14.80	0.651982378854626	9.5	3-11,3336-3328;14-19,3325-3320	1-2,3338-3337[UP5];12-13,3327-3326[SIL];20-21,3319-3318[UP3]	..((((((..(((((((((..&..)))))))))..))))))..	GCUCCAGUAUUUGAAGAUUAU&UAAAUCUUUAAUAAUUGGAUU	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN1709_c0_g1_3329_TPlot.pdf
TRINITY_DN1709_c0_g1:3646	si_a846	TRINITY_DN1709_c0_g1	3634	3654	3646	-32.50	-22.00	0.676923076923077	9	1-5,3654-3650;7-9,3649-3647;12-12,3644-3644;13-21,3642-3634	6-6,x-x[BULq];10-11,3646-3645[SIL];x-x,3643-3643[BULt]	(((((((((.(..(((-(((((&))))).)))..)-)))))))))	GGAUUUCAAUGGCGGC-ACUUC&GAAGUUGCUAAC-UUGAAAUCC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a846_TRINITY_DN1709_c0_g1_3646_TPlot.pdf
TRINITY_DN1709_c0_g1:4384	si_s326	TRINITY_DN1709_c0_g1	4373	4395	4384	-29.60	-20.08	0.678378378378378	14.5	1-2,4395-4394;4-8,4392-4388;11-21,4383-4373	3-3,4393-4393[SIL];9-10,4387-4384[AILt]	(((((((((((....(((((.((&)).)))))--..)))))))))))	GGGUCGUGUGUGUCGGUGGCCGG&CUUGUUAC--AAACAUACGAUUC	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s326_TRINITY_DN1709_c0_g1_4384_TPlot.pdf
TRINITY_DN1709_c0_g1:4526	si_a361	TRINITY_DN1709_c0_g1	4515	4534	4526	-29.00	-19.20	0.662068965517241	7	2-7,4533-4528;11-21,4525-4515	1-1,4534-4534[UP5];8-10,4527-4526[AILq]	(((((((((((..-((((((.&.))))))...)))))))))))	UUUUGAUCCGAGU-AAAUAGU&UCUAUUUUGAUCGGAUCAAAA	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN1709_c0_g1_4526_TPlot.pdf
TRINITY_DN17100_c0_g1:1337	si_a194	TRINITY_DN17100_c0_g1	1326	1348	1337	-29.40	-19.80	0.673469387755102	9.5	1-4,1348-1345;5-17,1342-1330	x-x,1344-1343[BULt];18-21,1329-1326[UP3]	....(((((((((((((..((((&))))--)))))))))))))....	AGGAAUUGGUGAACGGGUUGAAA&UUUC--CCUGUUCACUAAUAAAU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN17100_c0_g1_1337_TPlot.pdf
TRINITY_DN17102_c0_g1:296	si_a503	TRINITY_DN17102_c0_g1	285	305	296	-32.10	-23.90	0.744548286604361	7	1-15,305-291;17-18,289-288	16-16,290-290[SIL];19-21,287-285[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UGGUCGGAGGAAGGCGAAAGG&UUUUUCGUCUUCCUUGGAAUG	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN17102_c0_g1_296_TPlot.pdf
TRINITY_DN17102_c0_g1:299	si_a500	TRINITY_DN17102_c0_g1	288	308	299	-34.40	-23.90	0.694767441860465	9.5	4-18,305-291;20-21,289-288	1-3,308-306[UP5];19-19,290-290[SIL]	((.(((((((((((((((...&...))))))))))))))).))	UCGGAGGAAGGCGAAAGGGUU&UCGUUUUUCGUCUUCCUUGGA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN17102_c0_g1_299_TPlot.pdf
TRINITY_DN17102_c0_g1:302	si_s78	TRINITY_DN17102_c0_g1	290	311	302	-26.20	-17.10	0.652671755725191	14.5	6-12,306-300;13-21,298-290	1-5,311-307[UP5];x-x,299-299[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	GGAGGAAGGCGAAAGGGUUCUC&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN17102_c0_g1_302_TPlot.pdf
TRINITY_DN17102_c0_g1:506	si_s87	TRINITY_DN17102_c0_g1	486	516	506	-32.90	-22.90	0.696048632218845	12.5	1-3,516-514;4-15,512-501;16-21,491-486	x-x,513-513[BULt];x-x,500-492[BULt]	((((((.........((((((((((((.(((&)))-))))))))))))---------))))))	GAGCGAUAUUCGUCCAGAAGAAGAAGGAGAA&UUC-CUUUCUUCUUCU---------UCGCUU	4	0.999999999999177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN17102_c0_g1_506_TPlot.pdf
TRINITY_DN17102_c0_g1:721	si_a753	TRINITY_DN17102_c0_g1	710	731	721	-33.10	-21.80	0.658610271903323	8.5	1-9,731-723;11-20,720-711	10-10,722-721[AILt];21-21,710-710[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	UGAAGCUCAAGUUGAGGUUCGU&AUGAACCUC-CUUUGGGUUUUU	2	0.999718989854178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN17102_c0_g1_721_TPlot.pdf
TRINITY_DN17102_c0_g1:854	si_s852	TRINITY_DN17102_c0_g1	841	864	854	-41.90	-27.60	0.658711217183771	11	1-6,864-859;7-7,857-857;10-13,854-851;14-20,848-842	x-x,858-858[BULt];8-9,856-855[SIL];x-x,850-849[BULt];21-21,841-841[UP3]	.(((((((..((((..(.((((((&))))))-)..))))--))))))).	AGGGUCUGAUGGAGGAGCGCUCGC&GCGAGU-CGACUCC--UAGACCUA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s852_TRINITY_DN17102_c0_g1_854_TPlot.pdf
TRINITY_DN17102_c0_g1:960	si_a285	TRINITY_DN17102_c0_g1	948	969	960	-28.30	-19.50	0.68904593639576	10.5	3-12,967-958;13-16,956-953	1-2,969-968[UP5];x-x,957-957[BULt];17-21,952-948[UP3]	.....((((.((((((((((..&..))))))))))-)))).....	UCAUGAAGUACCAAGCGAUCGG&AAGAUCGCUUGG-AUUUAAAAA	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN17102_c0_g1_960_TPlot.pdf
TRINITY_DN17102_c0_g1:961	si_a284	TRINITY_DN17102_c0_g1	949	970	961	-28.30	-19.50	0.68904593639576	10.5	4-13,967-958;14-17,956-953	1-3,970-968[UP5];x-x,957-957[BULt];18-21,952-949[UP3]	....((((.((((((((((...&...))))))))))-))))....	CAUGAAGUACCAAGCGAUCGGC&AAAGAUCGCUUGG-AUUUAAAA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN17102_c0_g1_961_TPlot.pdf
TRINITY_DN17102_c0_g1:964	si_a281	TRINITY_DN17102_c0_g1	952	975	964	-31.70	-21.66	0.683280757097792	12.5	1-3,975-973;7-16,967-958;17-20,956-953	4-6,972-968[AILt];x-x,957-957[BULt];21-21,952-952[UP3]	.((((.((((((((((.....(((&)))--...))))))))))-)))).	GAAGUACCAAGCGAUCGGCAGUCG&CGA--AAAGAUCGCUUGG-AUUUA	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a281_TRINITY_DN17102_c0_g1_964_TPlot.pdf
TRINITY_DN17102_c0_g1:965	si_a280	TRINITY_DN17102_c0_g1	953	976	965	-32.10	-21.26	0.662305295950156	12.5	2-4,975-973;8-17,967-958;18-21,956-953	1-1,976-976[UP5];5-7,972-968[AILt];x-x,957-957[BULt]	((((.((((((((((.....(((.&.)))--...))))))))))-))))	AAGUACCAAGCGAUCGGCAGUCGA&ACGA--AAAGAUCGCUUGG-AUUU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN17102_c0_g1_965_TPlot.pdf
TRINITY_DN17105_c0_g1:149	si_s76	TRINITY_DN17105_c0_g1	135	158	149	-23.60	-16.30	0.690677966101695	10.5	3-15,156-144;16-21,140-135	1-2,158-157[UP5];x-x,143-141[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	AGGAAAGUUGGAAAGAGGAGAGUG&AUUUUUUUUCUUUCC---UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN17105_c0_g1_149_TPlot.pdf
TRINITY_DN17105_c0_g1:231	si_s835	TRINITY_DN17105_c0_g1	220	240	231	-27.70	-18.80	0.67870036101083	9	4-18,237-223	1-3,240-238[UP5];19-21,222-220[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUACUUCUUUCGAAUUGUCAU&AAAACAAUUUGAAAGAAGCGA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s835_TRINITY_DN17105_c0_g1_231_TPlot.pdf
TRINITY_DN17105_c0_g1:232	si_s834	TRINITY_DN17105_c0_g1	221	241	232	-26.70	-18.80	0.704119850187266	10	5-19,237-223	1-4,241-238[UP5];20-21,222-221[UP3]	..(((((((((((((((....&....)))))))))))))))..	UACUUCUUUCGAAUUGUCAUA&AAAAACAAUUUGAAAGAAGCG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s834_TRINITY_DN17105_c0_g1_232_TPlot.pdf
TRINITY_DN17105_c0_g1:233	si_s833	TRINITY_DN17105_c0_g1	222	242	233	-27.20	-18.80	0.691176470588235	11	6-20,237-223	1-5,242-238[UP5];21-21,222-222[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACUUCUUUCGAAUUGUCAUAG&GAAAAACAAUUUGAAAGAAGC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s833_TRINITY_DN17105_c0_g1_233_TPlot.pdf
TRINITY_DN1710_c0_g1:494	si_a70	TRINITY_DN1710_c0_g1	483	503	494	-23.90	-17.70	0.740585774058577	6.5	1-16,503-488	17-21,487-483[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUCUCAAGACAAUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1710_c0_g1_494_TPlot.pdf
TRINITY_DN1710_c0_g1:496	si_a68	TRINITY_DN1710_c0_g1	485	505	496	-25.40	-18.60	0.732283464566929	5.5	2-18,504-488	1-1,505-505[UP5];19-21,487-485[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CUCAAGACAAUUUGAAGGAAU&CUUCUUUCAAAUUGUUUUUCA	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1710_c0_g1_496_TPlot.pdf
TRINITY_DN1711_c0_g1:1280	si_a158	TRINITY_DN1711_c0_g1	1268	1290	1280	-31.40	-20.82	0.663057324840764	11.5	1-9,1290-1282;13-17,1277-1273;18-21,1271-1268	10-12,1281-1278[AILt];x-x,1272-1272[BULt]	((((.(((((....(((((((((&)))))))))-...)))))-))))	GGUGUAAUGGUAUGGGCCUUAGA&UUUAAGGUC-AAUCUAUU-CACC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a158_TRINITY_DN1711_c0_g1_1280_TPlot.pdf
TRINITY_DN1711_c0_g1:1744	si_s608	TRINITY_DN1711_c0_g1	1733	1753	1744	-26.70	-19.28	0.722097378277154	8	1-8,1753-1746;12-20,1742-1734	9-11,1745-1743[SIL];21-21,1733-1733[UP3]	.(((((((((...((((((((&))))))))...))))))))).	GUUGGAUUUAUUCGAGAUUCG&CGAAUCUUUUUUAAAUCCAAG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN1711_c0_g1_1744_TPlot.pdf
TRINITY_DN1711_c0_g1:1745	si_s607	TRINITY_DN1711_c0_g1	1734	1754	1745	-27.60	-20.88	0.756521739130435	7.5	1-9,1754-1746;13-21,1742-1734	10-12,1745-1743[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	UUGGAUUUAUUCGAGAUUCGU&GCGAAUCUUUUUUAAAUCCAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN1711_c0_g1_1745_TPlot.pdf
TRINITY_DN1711_c0_g1:1746	si_s606	TRINITY_DN1711_c0_g1	1735	1755	1746	-28.20	-20.28	0.719148936170213	8	2-10,1754-1746;14-21,1742-1735	1-1,1755-1755[UP5];11-13,1745-1743[SIL]	((((((((...(((((((((.&.)))))))))...))))))))	UGGAUUUAUUCGAGAUUCGUC&AGCGAAUCUUUUUUAAAUCCA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN1711_c0_g1_1746_TPlot.pdf
TRINITY_DN1711_c0_g1:1747	si_s605	TRINITY_DN1711_c0_g1	1736	1756	1747	-27.50	-18.78	0.682909090909091	9	3-11,1754-1746;15-21,1742-1736	1-2,1756-1755[UP5];12-14,1745-1743[SIL]	(((((((...(((((((((..&..)))))))))...)))))))	GGAUUUAUUCGAGAUUCGUCA&AAGCGAAUCUUUUUUAAAUCC	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN1711_c0_g1_1747_TPlot.pdf
TRINITY_DN1711_c0_g1:625	si_s546	TRINITY_DN1711_c0_g1	614	634	625	-26.20	-17.80	0.679389312977099	7.5	1-11,634-624;13-17,622-618	12-12,623-623[SIL];18-21,617-614[UP3]	....(((((.(((((((((((&))))))))))).)))))....	GACGGAUUCGAUUUUGAUUGG&CCGAUCAAAAUAGAAUUAAUA	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN1711_c0_g1_625_TPlot.pdf
TRINITY_DN1711_c0_g1:626	si_s545	TRINITY_DN1711_c0_g1	615	635	626	-26.80	-17.90	0.667910447761194	6.5	2-12,634-624;14-18,622-618	1-1,635-635[UP5];13-13,623-623[SIL];19-21,617-615[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	ACGGAUUCGAUUUUGAUUGGG&UCCGAUCAAAAUAGAAUUAAU	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s545_TRINITY_DN1711_c0_g1_626_TPlot.pdf
TRINITY_DN1711_c0_g1:627	si_s544	TRINITY_DN1711_c0_g1	616	636	627	-26.90	-17.90	0.66542750929368	7.5	3-13,634-624;15-19,622-618	1-2,636-635[UP5];14-14,623-623[SIL];20-21,617-616[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	CGGAUUCGAUUUUGAUUGGGA&AUCCGAUCAAAAUAGAAUUAA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN1711_c0_g1_627_TPlot.pdf
TRINITY_DN1711_c0_g1:830	si_a572	TRINITY_DN1711_c0_g1	820	839	830	-30.40	-20.60	0.677631578947368	6	1-14,839-826;16-20,825-821	15-15,x-x[BULq];21-21,820-820[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	CGUUAU-GACGUACGAUUUGC&GUGAAUCGUAUGUUUGUAACA	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN1711_c0_g1_830_TPlot.pdf
TRINITY_DN1711_c0_g1:831	si_a571	TRINITY_DN1711_c0_g1	821	840	831	-31.20	-21.90	0.701923076923077	5	1-15,840-826;17-21,825-821	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	GUUAU-GACGUACGAUUUGCG&CGUGAAUCGUAUGUUUGUAAC	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a571_TRINITY_DN1711_c0_g1_831_TPlot.pdf
TRINITY_DN17120_c0_g1:615	si_a459	TRINITY_DN17120_c0_g1	605	624	615	-23.20	-15.50	0.668103448275862	4	1-10,624-615;12-17,614-609;19-20,607-606	11-11,x-x[BULq];18-18,608-608[SIL];21-21,605-605[UP3]	.((.((((((-((((((((((&)))))))))).)))))).)).	AUAGAUAUUA-AUAUAACAAC&GUUGUUAUAUAUAAUAUGUAA	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN17120_c0_g1_615_TPlot.pdf
TRINITY_DN17120_c0_g1:619	si_a455	TRINITY_DN17120_c0_g1	609	628	619	-21.10	-14.30	0.677725118483412	6	4-14,625-615;16-21,614-609	1-3,628-626[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	AUAUUA-AUAUAACAACACCA&AAUUGUUGUUAUAUAUAAUAU	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN17120_c0_g1_619_TPlot.pdf
TRINITY_DN17120_c2_g1:2008	si_a121	TRINITY_DN17120_c2_g1	1984	2017	2008	-29.30	-20.80	0.709897610921502	29	1-11,2017-2007;12-21,1993-1984	x-x,2006-1994[BULt]	((((((((((.............(((((((((((&)))))))))))-------------))))))))))	ACUAUUGCUGAAUAAGCUUUUACUAGAACAGGCU&AGCUUGUUUUA-------------UAGCAAUAGU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN17120_c2_g1_2008_TPlot.pdf
TRINITY_DN17120_c2_g1:2944	si_a452	TRINITY_DN17120_c2_g1	2933	2953	2944	-23.00	-15.20	0.660869565217391	5.5	1-4,2953-2950;6-15,2948-2939;17-19,2937-2935	5-5,2949-2949[SIL];16-16,2938-2938[SIL];20-21,2934-2933[UP3]	..(((.((((((((((.((((&)))).)))))))))).)))..	CAGUACAUAACAACAAAUAUC&GAUAAUUGUUGUUAUAUAUAA	2	0.999267294216212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN17120_c2_g1_2944_TPlot.pdf
TRINITY_DN17120_c2_g1:788	si_s88	TRINITY_DN17120_c2_g1	777	798	788	-34.80	-23.40	0.672413793103448	5.5	1-2,798-797;3-13,795-785;15-20,783-778	x-x,796-796[BULt];14-14,784-784[SIL];21-21,777-777[UP3]	.((((((.(((((((((((.((&))-))))))))))).)))))).	AAAGUGAUGAAGAAGGAAGAGA&UC-CUUUCUUCUUCUUCGCUUC	2	0.999999990830869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN17120_c2_g1_788_TPlot.pdf
TRINITY_DN17120_c2_g1:793	si_s83	TRINITY_DN17120_c2_g1	782	804	793	-30.90	-20.40	0.660194174757282	7	1-3,804-802;4-7,800-797;8-18,795-785;20-21,783-782	x-x,801-801[BULt];x-x,796-796[BULt];19-19,784-784[SIL]	((.(((((((((((.((((.(((&)))-))))-))))))))))).))	GAUGAAGAAGGAAGAGAGACGAA&UUC-UUUC-CUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN17120_c2_g1_793_TPlot.pdf
TRINITY_DN17120_c2_g1:794	si_s82	TRINITY_DN17120_c2_g1	783	805	794	-28.90	-19.40	0.671280276816609	9	2-4,804-802;5-8,800-797;9-19,795-785	1-1,805-805[UP5];x-x,801-801[BULt];x-x,796-796[BULt];20-21,784-783[UP3]	..(((((((((((.((((.(((.&.)))-))))-)))))))))))..	AUGAAGAAGGAAGAGAGACGAAU&UUUC-UUUC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN17120_c2_g1_794_TPlot.pdf
TRINITY_DN17120_c2_g1:795	si_s81	TRINITY_DN17120_c2_g1	784	806	795	-28.90	-19.40	0.671280276816609	9.5	3-5,804-802;6-9,800-797;10-20,795-785	1-2,806-805[UP5];x-x,801-801[BULt];x-x,796-796[BULt];21-21,784-784[UP3]	.(((((((((((.((((.(((..&..)))-))))-))))))))))).	UGAAGAAGGAAGAGAGACGAAUG&UUUUC-UUUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN17120_c2_g1_795_TPlot.pdf
TRINITY_DN17120_c2_g1:797	si_s80	TRINITY_DN17120_c2_g1	785	807	797	-28.20	-19.00	0.673758865248227	10.5	4-6,804-802;7-10,800-797;11-21,795-785	1-3,807-805[UP5];x-x,801-801[BULt];x-x,796-796[BULt]	(((((((((((.((((.(((...&...)))-))))-)))))))))))	GAAGAAGGAAGAGAGACGAAUGA&UUUUUC-UUUC-CUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN17120_c2_g1_797_TPlot.pdf
TRINITY_DN17120_c2_g1:82	si_a259	TRINITY_DN17120_c2_g1	71	94	82	-39.20	-28.10	0.716836734693878	10.5	3-8,92-87;9-21,83-71	1-2,94-93[UP5];x-x,86-84[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	AGGUGUUUGCCUUGGCCGAUACGU&UUGUAUCG---AGGGCAAACGCCU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN17120_c2_g1_82_TPlot.pdf
TRINITY_DN17120_c2_g1:905	si_a789	TRINITY_DN17120_c2_g1	894	918	905	-24.80	-17.90	0.721774193548387	13.5	1-8,918-911;9-18,906-897	x-x,910-907[BULt];19-21,896-894[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	AAAGGGAAAUAGAAAUAGAAGUAGA&UCUAUUUU----UCUAUUUUCCAAU	2	0.993767817732346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN17120_c2_g1_905_TPlot.pdf
TRINITY_DN17120_c2_g1:906	si_a788	TRINITY_DN17120_c2_g1	895	919	906	-24.80	-18.80	0.758064516129032	12.5	1-9,919-911;10-19,906-897	x-x,910-907[BULt];20-21,896-895[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	AAGGGAAAUAGAAAUAGAAGUAGAA&UUCUAUUUU----UCUAUUUUCCAA	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN17120_c2_g1_906_TPlot.pdf
TRINITY_DN17120_c2_g1:907	si_s69	TRINITY_DN17120_c2_g1	895	916	907	-23.40	-16.90	0.722222222222222	5	2-13,915-904;14-20,902-896	1-1,916-916[UP5];x-x,903-903[BULt];21-21,895-895[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	AAGGGAAAUAGAAAUAGAAGUA&AACUUCUAUUUUU-UUUCUUUC	2	0.999999957087422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN17120_c2_g1_907_TPlot.pdf
TRINITY_DN17120_c2_g1:910	si_s72	TRINITY_DN17120_c2_g1	896	919	910	-24.10	-16.80	0.697095435684647	6.5	1-10,919-910;11-15,908-904;16-21,901-896	x-x,909-909[BULt];x-x,903-902[BULt]	((((((..(((((.((((((((((&))))))))))-)))))--))))))	AGGGAAAUAGAAAUAGAAGUAGAA&UUCUAUUUUU-UUUCU--UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN17120_c2_g1_910_TPlot.pdf
TRINITY_DN17120_c2_g1:912	si_a786	TRINITY_DN17120_c2_g1	897	921	912	-26.60	-20.80	0.781954887218045	11.5	2-11,920-911;12-21,906-897	1-1,921-921[UP5];x-x,910-907[BULt]	((((((((((....((((((((((.&.))))))))))----))))))))))	GGGAAAUAGAAAUAGAAGUAGAAGU&UCUUCUAUUUU----UCUAUUUUCC	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN17120_c2_g1_912_TPlot.pdf
TRINITY_DN17120_c2_g1:913	si_a785	TRINITY_DN17120_c2_g1	898	922	913	-25.90	-17.50	0.675675675675676	13.5	3-12,920-911;13-21,906-898	1-2,922-921[UP5];x-x,910-907[BULt]	(((((((((....((((((((((..&..))))))))))----)))))))))	GGAAAUAGAAAUAGAAGUAGAAGUC&CUCUUCUAUUUU----UCUAUUUUC	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN17120_c2_g1_913_TPlot.pdf
TRINITY_DN17134_c0_g3:116	si_a787	TRINITY_DN17134_c0_g3	100	125	116	-26.30	-19.60	0.745247148288973	8	1-13,125-113;14-20,107-101	x-x,112-108[BULt];21-21,100-100[UP3]	.(((((((.....(((((((((((((&)))))))))))))-----))))))).	CGGGAAGUCGGAGAGAAAAAUAGGAG&CUUCUAUUUUUCU-----AUUUUCCA	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN17134_c0_g3_116_TPlot.pdf
TRINITY_DN1713_c0_g1:1552	si_s678	TRINITY_DN1713_c0_g1	1540	1561	1552	-25.20	-18.30	0.726190476190476	6	1-12,1561-1550;13-17,1548-1544	x-x,1549-1549[BULt];18-21,1543-1540[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	AAAUACUCAGUGUUUCUAUAAU&AUUAUAGAAACA-UGAGUUUAA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN1713_c0_g1_1552_TPlot.pdf
TRINITY_DN1713_c0_g1:1553	si_s677	TRINITY_DN1713_c0_g1	1541	1562	1553	-27.10	-19.60	0.723247232472325	4.5	1-13,1562-1550;14-18,1548-1544	x-x,1549-1549[BULt];19-21,1543-1541[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	AAUACUCAGUGUUUCUAUAAUU&GAUUAUAGAAACA-UGAGUUUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s677_TRINITY_DN1713_c0_g1_1553_TPlot.pdf
TRINITY_DN1713_c0_g1:1557	si_s673	TRINITY_DN1713_c0_g1	1545	1566	1557	-26.80	-18.50	0.690298507462687	9	5-17,1562-1550;18-21,1548-1545	1-4,1566-1563[UP5];x-x,1549-1549[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	CUCAGUGUUUCUAUAAUUUUGC&AAUUGAUUAUAGAAACA-UGAG	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s673_TRINITY_DN1713_c0_g1_1557_TPlot.pdf
TRINITY_DN1713_c0_g1:1621	si_a898	TRINITY_DN1713_c0_g1	1610	1630	1621	-20.50	-14.40	0.702439024390244	9.5	1-15,1630-1616	16-21,1615-1610[UP3]	......(((((((((((((((&)))))))))))))))......	GACAAAGUUAUUUGUUGUUAC&GUAAUAAUAAGUAAUAUAAAA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN1713_c0_g1_1621_TPlot.pdf
TRINITY_DN1713_c0_g1:862	si_a72	TRINITY_DN1713_c0_g1	851	871	862	-21.90	-15.50	0.707762557077626	8.5	1-10,871-862;13-18,859-854	11-12,861-860[SIL];19-21,853-851[UP3]	...((((((..((((((((((&))))))))))..))))))...	AACAUGGAAUUCAAUUUGAGA&UUUCAAAUUGUUUUUCAUUAU	3	0.999997166155618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1713_c0_g1_862_TPlot.pdf
TRINITY_DN1713_c0_g1:863	si_a71	TRINITY_DN1713_c0_g1	852	872	863	-23.30	-18.00	0.772532188841202	6.5	1-11,872-862;14-19,859-854	12-13,861-860[SIL];20-21,853-852[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	ACAUGGAAUUCAAUUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1713_c0_g1_863_TPlot.pdf
TRINITY_DN1713_c0_g1:864	si_a70	TRINITY_DN1713_c0_g1	853	873	864	-23.90	-18.00	0.753138075313808	5.5	2-12,872-862;15-20,859-854	1-1,873-873[UP5];13-14,861-860[SIL];21-21,853-853[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	CAUGGAAUUCAAUUUGAGAGU&UCUUUCAAAUUGUUUUUCAUU	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1713_c0_g1_864_TPlot.pdf
TRINITY_DN1713_c0_g1:865	si_a69	TRINITY_DN1713_c0_g1	854	874	865	-24.00	-18.00	0.75	6.5	3-13,872-862;16-21,859-854	1-2,874-873[UP5];14-15,861-860[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	AUGGAAUUCAAUUUGAGAGUU&UUCUUUCAAAUUGUUUUUCAU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1713_c0_g1_865_TPlot.pdf
TRINITY_DN1713_c0_g1:866	si_a68	TRINITY_DN1713_c0_g1	855	875	866	-25.40	-16.90	0.665354330708661	8.5	4-14,872-862;17-21,859-855	1-3,875-873[UP5];15-16,861-860[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	UGGAAUUCAAUUUGAGAGUUC&CUUCUUUCAAAUUGUUUUUCA	2	0.999999930274592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1713_c0_g1_866_TPlot.pdf
TRINITY_DN17140_c0_g1:2083	si_s87	TRINITY_DN17140_c0_g1	2072	2092	2083	-32.90	-22.90	0.696048632218845	9	5-20,2088-2073	1-4,2092-2089[UP5];21-21,2072-2072[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGUGAAGAAGAAGAAAAUGA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999998407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN17140_c0_g1_2083_TPlot.pdf
TRINITY_DN17153_c0_g1:17	si_a486	TRINITY_DN17153_c0_g1	6	26	17	-24.90	-16.50	0.662650602409639	8.5	1-14,26-13;17-19,10-8	15-16,12-11[SIL];20-21,7-6[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN17153_c0_g1_17_TPlot.pdf
TRINITY_DN17156_c0_g1:1045	si_a139	TRINITY_DN17156_c0_g1	1034	1057	1045	-25.90	-17.40	0.671814671814672	13	2-8,1056-1050;9-18,1046-1037	1-1,1057-1057[UP5];x-x,1049-1047[BULt];19-21,1036-1034[UP3]	...((((((((((...(((((((.&.)))))))---))))))))))...	CUUCGACGACGAUUUUUGAUUGCA&AGUAAUUA---AUCGUUGUUGUUU	2	0.988673538665862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN17156_c0_g1_1045_TPlot.pdf
TRINITY_DN17156_c0_g1:1046	si_a138	TRINITY_DN17156_c0_g1	1035	1058	1046	-26.30	-17.40	0.661596958174905	14	3-9,1056-1050;10-19,1046-1037	1-2,1058-1057[UP5];x-x,1049-1047[BULt];20-21,1036-1035[UP3]	..((((((((((...(((((((..&..)))))))---))))))))))..	UUCGACGACGAUUUUUGAUUGCAC&UAGUAAUUA---AUCGUUGUUGUU	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN17156_c0_g1_1046_TPlot.pdf
TRINITY_DN17156_c0_g1:1051	si_a136	TRINITY_DN17156_c0_g1	1037	1060	1051	-25.70	-17.20	0.669260700389105	16	5-11,1056-1050;12-21,1046-1037	1-4,1060-1057[UP5];x-x,1049-1047[BULt]	((((((((((...(((((((....&....)))))))---))))))))))	CGACGACGAUUUUUGAUUGCACAC&AAUAGUAAUUA---AUCGUUGUUG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN17156_c0_g1_1051_TPlot.pdf
TRINITY_DN17156_c0_g1:430	si_a783	TRINITY_DN17156_c0_g1	419	439	430	-24.70	-18.90	0.765182186234818	9	3-16,437-424	1-2,439-438[UP5];17-21,423-419[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAGGCGAAAGAUAGAAGAGCA&AACUCUUCUAUUUUUCUAUUU	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN17156_c0_g1_430_TPlot.pdf
TRINITY_DN17156_c0_g1:431	si_a782	TRINITY_DN17156_c0_g1	420	440	431	-26.40	-18.90	0.715909090909091	9.5	4-17,437-424	1-3,440-438[UP5];18-21,423-420[UP3]	....((((((((((((((...&...))))))))))))))....	AGGCGAAAGAUAGAAGAGCAA&CAACUCUUCUAUUUUUCUAUU	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN17156_c0_g1_431_TPlot.pdf
TRINITY_DN17156_c0_g1:435	si_a778	TRINITY_DN17156_c0_g1	424	444	435	-28.30	-18.60	0.657243816254417	13.5	8-21,437-424	1-7,444-438[UP5]	((((((((((((((.......&.......))))))))))))))	GAAAGAUAGAAGAGCAAAAGG&GAUUCAACUCUUCUAUUUUUC	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN17156_c0_g1_435_TPlot.pdf
TRINITY_DN17159_c0_g1:3700	si_a399	TRINITY_DN17159_c0_g1	3689	3709	3700	-22.60	-16.10	0.712389380530973	8.5	4-19,3706-3691	1-3,3709-3707[UP5];20-21,3690-3689[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAAUGAAACAAUUCUAGCC&AUAUAGAAUUGUUUUGUUUAU	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN17159_c0_g1_3700_TPlot.pdf
TRINITY_DN17159_c0_g1:3701	si_a398	TRINITY_DN17159_c0_g1	3690	3710	3701	-22.40	-16.10	0.71875	9.5	5-20,3706-3691	1-4,3710-3707[UP5];21-21,3690-3690[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAUGAAACAAUUCUAGCCA&AAUAUAGAAUUGUUUUGUUUA	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN17159_c0_g1_3701_TPlot.pdf
TRINITY_DN17159_c0_g1:5447	si_s76	TRINITY_DN17159_c0_g1	5435	5456	5447	-23.60	-15.80	0.669491525423729	6	2-10,5455-5447;12-14,5445-5443;15-21,5441-5435	1-1,5456-5456[UP5];11-11,5446-5446[SIL];x-x,5442-5442[BULt]	(((((((.(((.(((((((((.&.))))))))).)))-)))))))	AGGAGAGAGAACGAAAAAAGAG&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN17159_c0_g1_5447_TPlot.pdf
TRINITY_DN1715_c0_g1:816	si_s69	TRINITY_DN1715_c0_g1	805	825	816	-23.40	-16.60	0.70940170940171	7.5	2-8,824-818;10-17,816-809;19-21,807-805	1-1,825-825[UP5];9-9,817-817[SIL];18-18,808-808[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	GAAUGAAGAAGGUUAGAGGUA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999501702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1715_c0_g1_816_TPlot.pdf
TRINITY_DN1715_c0_g1:940	si_a786	TRINITY_DN1715_c0_g1	927	949	940	-26.60	-17.40	0.654135338345865	10.5	3-12,947-938;13-21,935-927	1-2,949-948[UP5];x-x,937-936[BULt]	(((((((((..((((((((((..&..))))))))))--)))))))))	GGAAGGUGGCAAGAAAUAGAGUU&UCUUCUAUUUUU--CUAUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1715_c0_g1_940_TPlot.pdf
TRINITY_DN1716_c0_g1:222	si_a886	TRINITY_DN1716_c0_g1	211	231	222	-25.30	-17.50	0.691699604743083	7.5	1-14,231-218	15-21,217-211[UP3]	.......((((((((((((((&)))))))))))))).......	UUGAAAAAUUAUAUUGAUUGC&GCAAUCAAUAUAGUAAUAAUA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a886_TRINITY_DN1716_c0_g1_222_TPlot.pdf
TRINITY_DN1716_c0_g1:223	si_a885	TRINITY_DN1716_c0_g1	212	232	223	-25.60	-17.60	0.6875	7.5	2-15,231-218	1-1,232-232[UP5];16-21,217-212[UP3]	......((((((((((((((.&.))))))))))))))......	UGAAAAAUUAUAUUGAUUGCG&UGCAAUCAAUAUAGUAAUAAU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN1716_c0_g1_223_TPlot.pdf
TRINITY_DN1716_c0_g1:224	si_a884	TRINITY_DN1716_c0_g1	213	233	224	-25.60	-17.60	0.6875	8.5	3-16,231-218	1-2,233-232[UP5];17-21,217-213[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAAAAAUUAUAUUGAUUGCGU&UUGCAAUCAAUAUAGUAAUAA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN1716_c0_g1_224_TPlot.pdf
TRINITY_DN1716_c0_g1:417	si_a798	TRINITY_DN1716_c0_g1	401	426	417	-34.10	-23.40	0.686217008797654	12.5	2-10,425-417;11-20,411-402	1-1,426-426[UP5];x-x,416-412[BULt];21-21,401-401[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	ACGCUUUGGAUAAGGAUGGAAAAUAC&CUAUUUUCCA-----AUCCGAAGCGA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN1716_c0_g1_417_TPlot.pdf
TRINITY_DN1716_c0_g1:424	si_a791	TRINITY_DN1716_c0_g1	414	437	424	-26.50	-17.70	0.667924528301887	11	1-9,437-429;10-17,424-417;19-21,416-414	x-x,428-425[BULt];18-18,x-x[BULq]	(((-((((((((....(((((((((&)))))))))----)))))))).)))	GGA-UGGAAAAUACCAAGAGAGAUA&UAUUUUUCU----AUUUUCCAAUCC	4	0.999999073922236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1716_c0_g1_424_TPlot.pdf
TRINITY_DN17170_c0_g1:528	si_a73	TRINITY_DN17170_c0_g1	517	537	528	-21.90	-14.60	0.666666666666667	7	1-4,537-534;6-18,532-520	5-5,533-533[SIL];19-21,519-517[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CAAAGUGAGAAAUAAUAUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.99999999999562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN17170_c0_g1_528_TPlot.pdf
TRINITY_DN17173_c2_g1:2875	si_a809	TRINITY_DN17173_c2_g1	2864	2896	2875	-34.70	-23.20	0.668587896253602	26	1-9,2896-2888;10-20,2875-2865	x-x,2887-2876[BULt];21-21,2864-2864[UP3]	.(((((((((((............(((((((((&)))))))))------------))))))))))).	CUUCUUCUUCUUAAGAUGCCUAUCCGUUUCGGA&UCCGAAGCG------------AAGAAGAAGAAA	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN17173_c2_g1_2875_TPlot.pdf
TRINITY_DN17173_c2_g1:2888	si_a808	TRINITY_DN17173_c2_g1	2865	2897	2888	-34.90	-24.20	0.693409742120344	25	1-10,2897-2888;11-21,2875-2865	x-x,2887-2876[BULt]	(((((((((((............((((((((((&))))))))))------------)))))))))))	UUCUUCUUCUUAAGAUGCCUAUCCGUUUCGGAU&AUCCGAAGCG------------AAGAAGAAGAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN17173_c2_g1_2888_TPlot.pdf
TRINITY_DN17173_c2_g1:2889	si_a807	TRINITY_DN17173_c2_g1	2866	2898	2889	-34.80	-23.60	0.67816091954023	26	2-11,2897-2888;12-21,2875-2866	1-1,2898-2898[UP5];x-x,2887-2876[BULt]	((((((((((............((((((((((.&.))))))))))------------))))))))))	UCUUCUUCUUAAGAUGCCUAUCCGUUUCGGAUG&AAUCCGAAGCG------------AAGAAGAAGA	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a807_TRINITY_DN17173_c2_g1_2889_TPlot.pdf
TRINITY_DN17181_c0_g1:35	si_a664	TRINITY_DN17181_c0_g1	24	44	35	-29.60	-20.70	0.699324324324324	12.5	5-18,40-27	1-4,44-41[UP5];19-21,26-24[UP3]	...((((((((((((((....&....))))))))))))))...	CACGGGAAUUAAUGGGCCUUG&AAAUGCCUAUUGAUUCCUUAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN17181_c0_g1_35_TPlot.pdf
TRINITY_DN1718_c0_g1:900	si_a472	TRINITY_DN1718_c0_g1	889	909	900	-21.50	-14.40	0.669767441860465	8	1-3,909-907;5-7,905-903;10-20,900-890	4-4,906-906[SIL];8-9,902-901[SIL];21-21,889-889[UP3]	.(((((((((((..(((.(((&))).)))..))))))))))).	GGUGUAACAAUAUGUACUUAU&AUAUGUAAUUAUUGUUAUAUA	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1718_c0_g1_900_TPlot.pdf
TRINITY_DN17211_c1_g2:1861	si_a630	TRINITY_DN17211_c1_g2	1851	1870	1861	-25.80	-18.70	0.724806201550388	4.5	1-16,1870-1855;19-21,1853-1851	17-18,1854-1854[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	UCAC-GGAAUCGGCAUAAUAU&GUAUUAUGUCGAUUUUUUUGA	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN17211_c1_g2_1861_TPlot.pdf
TRINITY_DN17215_c0_g1:1137	si_a401	TRINITY_DN17215_c0_g1	1126	1146	1137	-22.60	-14.70	0.650442477876106	5.5	1-3,1146-1144;5-9,1142-1138;11-21,1136-1126	4-4,1143-1143[SIL];10-10,1137-1137[SIL]	(((((((((((.(((((.(((&))).))))).)))))))))))	AUGUAAACAAAUUAAUUGUAU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999999896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN17215_c0_g1_1137_TPlot.pdf
TRINITY_DN17215_c0_g1:488	si_a68	TRINITY_DN17215_c0_g1	476	498	488	-25.40	-17.80	0.700787401574803	8.5	1-9,498-490;11-18,487-480;19-20,478-477	10-10,489-488[AILt];x-x,479-479[BULt];21-21,476-476[UP3]	.((.((((((((..(((((((((&)))))))))-.))))))))-)).	AGAUGAAGCGAUGGUGGAAGAAG&CUUCUUUCA-AAUUGUUUU-UCA	4	0.999994064120275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN17215_c0_g1_488_TPlot.pdf
TRINITY_DN17215_c0_g1:970	si_a79	TRINITY_DN17215_c0_g1	959	979	970	-22.20	-14.60	0.657657657657658	5	1-10,979-970;12-16,968-964;18-20,962-960	11-11,969-969[SIL];17-17,963-963[SIL];21-21,959-959[UP3]	.(((.(((((.((((((((((&)))))))))).))))).))).	GUUCGUAAUACUGAAAAGCAA&UUGUUUUUCAUUAUUAAGAAA	3	0.999999993201385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN17215_c0_g1_970_TPlot.pdf
TRINITY_DN17217_c1_g1:130	si_a398	TRINITY_DN17217_c1_g1	119	139	130	-22.40	-15.60	0.696428571428572	7	2-13,138-127;15-16,125-124;18-20,122-120	1-1,139-139[UP5];14-14,126-126[SIL];17-17,123-123[SIL];21-21,119-119[UP3]	.(((.((.((((((((((((.&.)))))))))))).)).))).	AAAAGGAUGCAAUUCUGUGUC&AAUAUAGAAUUGUUUUGUUUA	4	0.999971501982316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN17217_c1_g1_130_TPlot.pdf
TRINITY_DN17220_c0_g1:1534	si_s69	TRINITY_DN17220_c0_g1	1523	1543	1534	-23.40	-15.30	0.653846153846154	10	5-10,1539-1534;12-21,1532-1523	1-4,1543-1540[UP5];11-11,1533-1533[SIL]	((((((((((.((((((....&....)))))).))))))))))	GAAAGAAGGAUAAUAGAUAUG&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN17220_c0_g1_1534_TPlot.pdf
TRINITY_DN17220_c0_g1:4442	si_a487	TRINITY_DN17220_c0_g1	4432	4451	4442	-24.80	-16.30	0.657258064516129	6.5	1-3,4451-4449;5-10,4447-4442;12-21,4441-4432	4-4,4448-4448[SIL];11-11,x-x[BULq]	((((((((((-((((((.(((&))).)))))).))))))))))	AAAAACGACA-GUUCUAAGUG&UAUAUAGAAUAUGUCGUUUUU	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN17220_c0_g1_4442_TPlot.pdf
TRINITY_DN17223_c0_g1:57	si_s316	TRINITY_DN17223_c0_g1	47	67	57	-31.50	-21.50	0.682539682539683	8	1-4,67-64;5-12,62-55;14-20,54-48	x-x,63-63[BULt];13-13,x-x[BULq];21-21,47-47[UP3]	.(((((((-((((((((.((((&))))-)))))))).))))))).	GUUGUGAC-GGAGGGGCAAGAG&UUCU-GUCCUUCUUGUUACAAA	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN17223_c0_g1_57_TPlot.pdf
TRINITY_DN17225_c0_g1:3051	si_a409	TRINITY_DN17225_c0_g1	3040	3060	3051	-19.50	-13.10	0.671794871794872	9	1-15,3060-3046	16-21,3045-3040[UP3]	......(((((((((((((((&)))))))))))))))......	UUUAAAAGAUAUAGACGAAAU&GUUUUGUUUAUAUUUAAAUAA	2	0.999999745585644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN17225_c0_g1_3051_TPlot.pdf
TRINITY_DN17228_c0_g1:1232	si_s633	TRINITY_DN17228_c0_g1	1221	1241	1232	-37.90	-25.00	0.659630606860158	18	10-21,1232-1221	1-9,1241-1233[UP5]	((((((((((((.........&.........))))))))))))	GGGGCAGACGCCAAUUCCGAC&CUUUUCGUAGGCGUUUGCCCU	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN17228_c0_g1_1232_TPlot.pdf
TRINITY_DN1722_c0_g1:2770	si_s544	TRINITY_DN1722_c0_g1	2758	2779	2770	-26.90	-17.60	0.654275092936803	7.5	2-4,2778-2776;6-14,2774-2766;15-19,2764-2760	1-1,2779-2779[UP5];5-5,2775-2775[SIL];x-x,2765-2765[BULt];20-21,2759-2758[UP3]	..(((((.(((((((((.(((.&.))).)))))))))-)))))..	GGAGUUCGUAUUUUGGUGGGAA&AUCCGAUCAAAAUA-GAAUUAA	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN1722_c0_g1_2770_TPlot.pdf
TRINITY_DN17232_c0_g1:2168	si_s767	TRINITY_DN17232_c0_g1	2156	2177	2168	-28.10	-18.40	0.654804270462633	10.5	5-10,2173-2168;11-21,2166-2156	1-4,2177-2174[UP5];x-x,2167-2167[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GGCAAUAGUGAUUUAAUCCAAA&CAACGAUUAA-UUACUAUUGCU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN17232_c0_g1_2168_TPlot.pdf
TRINITY_DN17235_c0_g1:1822	si_a142	TRINITY_DN17235_c0_g1	1811	1831	1822	-23.50	-15.40	0.65531914893617	11.5	3-4,1829-1828;7-18,1825-1814	1-2,1831-1830[UP5];5-6,1827-1826[SIL];19-21,1813-1811[UP3]	...((((((((((((..((..&..))..))))))))))))...	CCUGGACGACAACGAGGAAGA&AAUUAAUCGUUGUUGUUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN17235_c0_g1_1822_TPlot.pdf
TRINITY_DN17235_c0_g1:2144	si_s243	TRINITY_DN17235_c0_g1	2133	2153	2144	-33.80	-22.20	0.656804733727811	14	6-19,2148-2135	1-5,2153-2149[UP5];20-21,2134-2133[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUCGGGAAGUGUCUGGCUUC&AUCAAUAGGCAUUUCCCGAUA	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s243_TRINITY_DN17235_c0_g1_2144_TPlot.pdf
TRINITY_DN17235_c0_g1:2160	si_s631	TRINITY_DN17235_c0_g1	2148	2170	2160	-36.00	-24.30	0.675	9.5	2-9,2169-2162;11-16,2159-2154;19-21,2150-2148	1-1,2170-2170[UP5];10-10,2161-2160[AILt];17-18,2153-2151[AILt]	(((...((((((..((((((((.&.))))))))-.))))))-..)))	GGCUUCGCGCCUUUCGAGAAGAG&AUCUUUUCG-UAGGCGU-UUGCC	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN17235_c0_g1_2160_TPlot.pdf
TRINITY_DN17235_c0_g1:2172	si_s809	TRINITY_DN17235_c0_g1	2160	2181	2172	-28.50	-19.10	0.670175438596491	10	2-11,2180-2171;12-18,2169-2163	1-1,2181-2181[UP5];x-x,2170-2170[BULt];19-21,2162-2160[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	UUCGAGAAGAGGGUGAUGGAGC&UCUUCGUUACC-UUUUCUUAAU	4	0.999999992757229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN17235_c0_g1_2172_TPlot.pdf
TRINITY_DN17235_c0_g1:2174	si_s807	TRINITY_DN17235_c0_g1	2162	2183	2174	-28.90	-19.10	0.660899653979239	11	4-13,2180-2171;14-20,2169-2163	1-3,2183-2181[UP5];x-x,2170-2170[BULt];21-21,2162-2162[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	CGAGAAGAGGGUGAUGGAGCUU&UAUCUUCGUUACC-UUUUCUUA	4	0.999999999985496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN17235_c0_g1_2174_TPlot.pdf
TRINITY_DN17235_c0_g1:2268	si_s87	TRINITY_DN17235_c0_g1	2257	2279	2268	-32.90	-21.50	0.653495440729483	9	2-8,2278-2272;9-16,2269-2262;18-21,2260-2257	1-1,2279-2279[UP5];x-x,2271-2270[BULt];17-17,2261-2261[SIL]	((((.((((((((..(((((((.&.)))))))--)))))))).))))	GGGCCAAGAGGAAGCGAGAGGAG&UUCCUUUC--UUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN17235_c0_g1_2268_TPlot.pdf
TRINITY_DN17235_c0_g1:2273	si_s75	TRINITY_DN17235_c0_g1	2261	2282	2273	-24.00	-16.40	0.683333333333333	10	1-11,2282-2272;12-19,2270-2263	x-x,2271-2271[BULt];20-21,2262-2261[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	CAAGAGGAAGCGAGAGGAGAUG&UAUUUUUUUUC-UUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN17235_c0_g1_2273_TPlot.pdf
TRINITY_DN17235_c0_g1:2274	si_s74	TRINITY_DN17235_c0_g1	2262	2283	2274	-25.00	-16.60	0.664	10	2-12,2282-2272;13-20,2270-2263	1-1,2283-2283[UP5];x-x,2271-2271[BULt];21-21,2262-2262[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	AAGAGGAAGCGAGAGGAGAUGU&CUAUUUUUUUUC-UUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN17235_c0_g1_2274_TPlot.pdf
TRINITY_DN17235_c0_g1:2275	si_s73	TRINITY_DN17235_c0_g1	2263	2284	2275	-24.00	-16.60	0.691666666666667	10	3-13,2282-2272;14-21,2270-2263	1-2,2284-2283[UP5];x-x,2271-2271[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AGAGGAAGCGAGAGGAGAUGUC&UCUAUUUUUUUUC-UUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN17235_c0_g1_2275_TPlot.pdf
TRINITY_DN17235_c0_g1:2571	si_s78	TRINITY_DN17235_c0_g1	2560	2580	2571	-26.20	-17.10	0.652671755725191	13.5	6-19,2575-2562	1-5,2580-2576[UP5];20-21,2561-2560[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACAAGAAGGGGAAGGACUCCG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN17235_c0_g1_2571_TPlot.pdf
TRINITY_DN17235_c0_g1:2573	si_s76	TRINITY_DN17235_c0_g1	2562	2582	2573	-23.60	-17.10	0.724576271186441	15	8-21,2575-2562	1-7,2582-2576[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAGGGGAAGGACUCCGUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN17235_c0_g1_2573_TPlot.pdf
TRINITY_DN17239_c2_g1:28	si_s483	TRINITY_DN17239_c2_g1	17	37	28	-21.40	-14.90	0.696261682242991	9.5	1-14,37-24	15-21,23-17[UP3]	.......((((((((((((((&)))))))))))))).......	GUUAGUAAGGUAAGUAUAGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN17239_c2_g1_28_TPlot.pdf
TRINITY_DN17239_c2_g1:29	si_s482	TRINITY_DN17239_c2_g1	18	38	29	-21.20	-14.90	0.702830188679245	9	2-15,37-24	1-1,38-38[UP5];16-21,23-18[UP3]	......((((((((((((((.&.))))))))))))))......	UUAGUAAGGUAAGUAUAGGAA&AUCCUAUAUUUAUUUAAAUAU	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN17239_c2_g1_29_TPlot.pdf
TRINITY_DN17239_c2_g1:30	si_s481	TRINITY_DN17239_c2_g1	19	40	30	-23.00	-15.70	0.682608695652174	9	1-3,40-38;4-16,36-24	x-x,37-37[BULt];17-21,23-19[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	UAGUAAGGUAAGUAUAGGAAUC&GAU-CCUAUAUUUAUUUAAAUA	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN17239_c2_g1_30_TPlot.pdf
TRINITY_DN1723_c0_g1:2401	si_s72	TRINITY_DN1723_c0_g1	2384	2410	2401	-24.10	-15.90	0.659751037344398	13	1-12,2410-2399;13-17,2393-2389;18-21,2387-2384	x-x,2398-2394[BULt];x-x,2388-2388[BULt]	((((.(((((.....((((((((((((&))))))))))))-----)))))-))))	AAGGCAAAGACGUGCAAAGAAGUAGAA&UUCUAUUUUUUU-----UCUUU-CCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1723_c0_g1_2401_TPlot.pdf
TRINITY_DN1723_c0_g1:2481	si_a71	TRINITY_DN1723_c0_g1	2470	2489	2481	-23.30	-16.20	0.695278969957081	8	1-7,2489-2483;9-17,2482-2474	8-8,x-x[BULq];18-21,2473-2470[UP3]	....(((((((((-(((((((&))))))).)))))))))....	UCGGGAAAAGCAG-UUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1723_c0_g1_2481_TPlot.pdf
TRINITY_DN1723_c0_g1:2484	si_a67	TRINITY_DN1723_c0_g1	2474	2493	2484	-27.20	-24.90	0.915441176470588	3	1-11,2493-2483;13-21,2482-2474	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GAAAAGCAG-UUGAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1723_c0_g1_2484_TPlot.pdf
TRINITY_DN1723_c0_g1:2486	si_a65	TRINITY_DN1723_c0_g1	2476	2495	2486	-27.70	-20.90	0.754512635379061	5	3-13,2493-2483;15-21,2482-2476	1-2,2495-2494[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	AAAGCAG-UUGAAAGAAGCAG&UCGCUUCUUUCAAAUUGUUUU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN1723_c0_g1_2486_TPlot.pdf
TRINITY_DN1723_c0_g1:2487	si_a64	TRINITY_DN1723_c0_g1	2477	2495	2487	-29.40	-20.00	0.680272108843537	4	1-2,2495-2494;4-14,2493-2483;16-21,2482-2477	3-3,x-x[BULq];15-15,x-x[BULq]	((((((-(((((((((((-((&)).))))))))))).))))))	AAGCAG-UUGAAAGAAGC-AG&CUCGCUUCUUUCAAAUUGUUU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN1723_c0_g1_2487_TPlot.pdf
TRINITY_DN1723_c0_g1:2686	si_s250	TRINITY_DN1723_c0_g1	2675	2695	2686	-33.30	-21.80	0.654654654654655	7	1-9,2695-2687;11-18,2685-2678	10-10,2686-2686[SIL];19-21,2677-2675[UP3]	...((((((((.(((((((((&))))))))).))))))))...	CAGGAUAUAUCUGGAAGUGCU&GGCAUUUCCCGAUAUAUUACU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN1723_c0_g1_2686_TPlot.pdf
TRINITY_DN1723_c0_g1:2687	si_s249	TRINITY_DN1723_c0_g1	2676	2696	2687	-33.30	-21.80	0.654654654654655	7.5	2-10,2695-2687;12-19,2685-2678	1-1,2696-2696[UP5];11-11,2686-2686[SIL];20-21,2677-2676[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	AGGAUAUAUCUGGAAGUGCUG&AGGCAUUUCCCGAUAUAUUAC	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN1723_c0_g1_2687_TPlot.pdf
TRINITY_DN1723_c0_g1:329	si_a111	TRINITY_DN1723_c0_g1	318	338	329	-26.20	-17.10	0.652671755725191	14	5-9,334-330;11-19,328-320	1-4,338-335[UP5];10-10,329-329[SIL];20-21,319-318[UP3]	..(((((((((.(((((....&....))))).)))))))))..	GUGGGCAGGCUGGUGUUAAUA&AUAAAAUACGAGCUUGUUUUA	4	0.999988024589162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN1723_c0_g1_329_TPlot.pdf
TRINITY_DN17243_c0_g1:139	si_a588	TRINITY_DN17243_c0_g1	128	149	139	-29.00	-19.50	0.672413793103448	8	1-5,149-145;7-21,142-128	6-6,144-143[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	GGGAUUCUGUUCUUUGGUGUUG&UAACA-AGAAGGACAGAAUUUU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN17243_c0_g1_139_TPlot.pdf
TRINITY_DN1724_c0_g2:2251	si_a855	TRINITY_DN1724_c0_g2	2240	2260	2251	-24.70	-16.20	0.65587044534413	8.5	3-3,2258-2258;5-19,2256-2242	1-2,2260-2259[UP5];4-4,2257-2257[SIL];20-21,2241-2240[UP3]	..(((((((((((((((.(..&..).)))))))))))))))..	UCAAUAGUUGGAUUUUAUGGA&AACUUGAAAUCCAAUUAUUAA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN1724_c0_g2_2251_TPlot.pdf
TRINITY_DN1724_c0_g2:497	si_s423	TRINITY_DN1724_c0_g2	486	506	497	-21.50	-16.50	0.767441860465116	6.5	1-9,506-498;11-19,496-488	10-10,497-497[SIL];20-21,487-486[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UUGUUAUUGUUUUGUGGAAUA&UAUUCUAUAUAACAAUAAUUA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN1724_c0_g2_497_TPlot.pdf
TRINITY_DN17257_c0_g1:594	si_a398	TRINITY_DN17257_c0_g1	583	603	594	-22.40	-16.60	0.741071428571429	5	1-19,603-585	20-21,584-583[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CUGGCAAAAUAAUUUUAUAUU&AAUAUAGAAUUGUUUUGUUUA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN17257_c0_g1_594_TPlot.pdf
TRINITY_DN17262_c1_g1:321	si_a63	TRINITY_DN17262_c1_g1	311	330	321	-30.20	-19.70	0.652317880794702	9	1-13,330-318;17-21,315-311	14-16,317-316[AILq]	(((((..-(((((((((((((&)))))))))))))...)))))	AACAAGA-GAGGGGGGUGGGU&ACUCGCUUCUUUCAAAUUGUU	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN17262_c1_g1_321_TPlot.pdf
TRINITY_DN17275_c0_g1:190	si_a442	TRINITY_DN17275_c0_g1	179	199	190	-29.30	-19.50	0.665529010238908	8	2-8,198-192;10-11,190-189;13-20,187-180	1-1,199-199[UP5];9-9,191-191[SIL];12-12,188-188[SIL];21-21,179-179[UP3]	.((((((((.((.(((((((.&.))))))).)).)))))))).	GAACAAUUACCUGGUGUCCAU&UUGGAUAUGAGAUAAUUGUUG	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN17275_c0_g1_190_TPlot.pdf
TRINITY_DN17275_c0_g1:400	si_s79	TRINITY_DN17275_c0_g1	386	409	400	-26.20	-18.02	0.687786259541985	13	2-12,408-398;15-21,392-386	1-1,409-409[UP5];13-14,397-393[AILt]	(((((((.....(((((((((((.&.)))))))))))---..)))))))	AGGAGGAUAAAUGGAAAGGAGGAU&UUUUUUCUUUCC---UUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN17275_c0_g1_400_TPlot.pdf
TRINITY_DN17275_c0_g1:401	si_s78	TRINITY_DN17275_c0_g1	387	410	401	-26.20	-17.22	0.657251908396947	12	3-13,408-398;16-21,392-387	1-2,410-409[UP5];14-15,397-393[AILt]	((((((.....(((((((((((..&..)))))))))))---..))))))	GGAGGAUAAAUGGAAAGGAGGAUA&UUUUUUUCUUUCC---UUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN17275_c0_g1_401_TPlot.pdf
TRINITY_DN1727_c1_g1:1469	si_a495	TRINITY_DN1727_c1_g1	1460	1478	1469	-31.90	-21.28	0.667084639498433	9.5	1-10,1478-1469;15-21,1466-1460	11-14,1468-1467[AILq]	(((((((..--((((((((((&))))))))))....)))))))	GGAGGACUC--AGCGACGUGU&AUAUGUCGUUUUUCGUCUUCC	2	0.999995866409828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1727_c1_g1_1469_TPlot.pdf
TRINITY_DN1727_c1_g1:292	si_a872	TRINITY_DN1727_c1_g1	281	304	292	-27.00	-18.30	0.677777777777778	15	6-8,299-297;9-21,293-281	1-5,304-300[UP5];x-x,296-294[BULt]	(((((((((((((...(((.....&.....)))---)))))))))))))	UGAUUGCAACUAAUACAUCAACAC&UUAAAGAU---UUAGUUGCAAUCA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN1727_c1_g1_292_TPlot.pdf
TRINITY_DN1727_c1_g1:410	si_a80	TRINITY_DN1727_c1_g1	397	419	410	-22.10	-14.80	0.669683257918552	7.5	2-15,418-405;17-20,401-398	1-1,419-419[UP5];16-16,404-402[AILt];21-21,397-397[UP3]	.((((...((((((((((((((.&.))))))))))))))--.)))).	AUUUCAACUAGUGAUGAAGAACU&UGUUUUUCAUUAUUA--AGAAAA	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1727_c1_g1_410_TPlot.pdf
TRINITY_DN1727_c1_g1:411	si_a79	TRINITY_DN1727_c1_g1	400	420	411	-22.20	-14.70	0.662162162162162	10.5	3-16,418-405	1-2,420-419[UP5];17-21,404-400[UP3]	.....((((((((((((((..&..)))))))))))))).....	UCAACUAGUGAUGAAGAACUC&UUGUUUUUCAUUAUUAAGAAA	4	0.999999963762016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN1727_c1_g1_411_TPlot.pdf
TRINITY_DN1727_c1_g1:414	si_a76	TRINITY_DN1727_c1_g1	403	423	414	-21.20	-14.70	0.693396226415094	13	6-19,418-405	1-5,423-419[UP5];20-21,404-403[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACUAGUGAUGAAGAACUCGAG&AAAUUGUUUUUCAUUAUUAAG	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN1727_c1_g1_414_TPlot.pdf
TRINITY_DN1727_c1_g1:415	si_a75	TRINITY_DN1727_c1_g1	404	424	415	-21.30	-14.70	0.690140845070423	14	7-20,418-405	1-6,424-419[UP5];21-21,404-404[UP3]	.((((((((((((((......&......)))))))))))))).	CUAGUGAUGAAGAACUCGAGA&CAAAUUGUUUUUCAUUAUUAA	4	0.999999976508978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1727_c1_g1_415_TPlot.pdf
TRINITY_DN17287_c0_g1:575	si_s81	TRINITY_DN17287_c0_g1	564	584	575	-28.90	-20.10	0.695501730103806	10.5	1-10,584-575;13-15,572-570;17-21,568-564	11-12,574-573[SIL];16-16,569-569[SIL]	(((((.(((..((((((((((&))))))))))..))).)))))	GGGAGCGGAUUGGGAGGAGGA&UUUUCUUUCCUUUCUUCUUCU	2	0.999999999999884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN17287_c0_g1_575_TPlot.pdf
TRINITY_DN17287_c0_g1:774	si_a805	TRINITY_DN17287_c0_g1	763	783	774	-36.30	-23.90	0.658402203856749	8	1-7,783-777;9-15,775-769	8-8,776-776[SIL];16-21,768-763[UP3]	......(((((((.(((((((&))))))).)))))))......	CGGAAGUUCGCUUGGGAUUGG&CCAAUCCGAAGCGAAGAAGAA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a805_TRINITY_DN17287_c0_g1_774_TPlot.pdf
TRINITY_DN1728_c0_g1:1501	si_a348	TRINITY_DN1728_c0_g1	1491	1510	1501	-21.10	-14.20	0.672985781990521	3	1-15,1510-1496;17-20,1495-1492	16-16,x-x[BULq];21-21,1491-1491[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	UAAAU-GAAUUAAUAUUUUUG&CGAAAAUAUUAAUUCUAUUUU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN1728_c0_g1_1501_TPlot.pdf
TRINITY_DN1729_c0_g1:661	si_s352	TRINITY_DN1729_c0_g1	650	668	661	-27.20	-17.80	0.654411764705882	8.5	1-4,668-665;8-19,663-652	5-7,664-664[AILq];20-21,651-650[UP3]	..((((((((((((.--((((&))))...))))))))))))..	CGCAAUCUGUUUCUC--UCUC&GAGAUAAAGAAAUAGAUUGAA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN1729_c0_g1_661_TPlot.pdf
TRINITY_DN1730_c1_g1:3362	si_s771	TRINITY_DN1730_c1_g1	3351	3371	3362	-25.20	-16.50	0.654761904761905	7	2-14,3370-3358;16-19,3356-3353	1-1,3371-3371[UP5];15-15,3357-3357[SIL];20-21,3352-3351[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UGGUAGAGAUAGUGAUUAGUA&GAUUAAUUACUAUUGCUAUAA	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN1730_c1_g1_3362_TPlot.pdf
TRINITY_DN17314_c1_g1:47	si_a583	TRINITY_DN17314_c1_g1	36	59	47	-33.10	-22.52	0.68036253776435	12	2-9,58-51;12-21,45-36	1-1,59-59[UP5];10-11,50-46[AILt]	((((((((((.....((((((((.&.))))))))---..))))))))))	UCUGUCCUUCCAUACGUUACGAAA&GUUUGUAAC---AAGAAGGACAGA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a583_TRINITY_DN17314_c1_g1_47_TPlot.pdf
TRINITY_DN17317_c0_g1:1126	si_s693	TRINITY_DN17317_c0_g1	1115	1135	1126	-23.90	-15.70	0.656903765690377	11.5	6-20,1130-1116	1-5,1135-1131[UP5];21-21,1115-1115[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAUGAAUCGAUUAAUAGGAG&GUUUAAUUAGUCGAUUUAUUA	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN17317_c0_g1_1126_TPlot.pdf
TRINITY_DN17317_c0_g1:1145	si_a641	TRINITY_DN17317_c0_g1	1134	1154	1145	-23.60	-16.60	0.703389830508475	8.5	3-8,1152-1147;10-20,1145-1135	1-2,1154-1153[UP5];9-9,1146-1146[SIL];21-21,1134-1134[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	AGGUGUGUUACUGAAAAAGCU&AUUUUUUUGAGUAAUAUAUCG	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN17317_c0_g1_1145_TPlot.pdf
TRINITY_DN17317_c0_g1:1146	si_a640	TRINITY_DN17317_c0_g1	1135	1155	1146	-24.10	-16.20	0.672199170124481	9.5	4-9,1152-1147;11-21,1145-1135	1-3,1155-1153[UP5];10-10,1146-1146[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GGUGUGUUACUGAAAAAGCUG&GAUUUUUUUGAGUAAUAUAUC	4	0.999687580080934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN17317_c0_g1_1146_TPlot.pdf
TRINITY_DN1731_c0_g1:1338	si_a502	TRINITY_DN1731_c0_g1	1328	1347	1338	-32.10	-24.60	0.766355140186916	5.5	1-13,1347-1335;15-19,1334-1330	14-14,x-x[BULq];20-21,1329-1328[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	ACUCCGA-GAAGGCGAAAGAC&GUUUUUCGUCUUCCUUGGAAU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1731_c0_g1_1338_TPlot.pdf
TRINITY_DN1731_c0_g1:1339	si_a501	TRINITY_DN1731_c0_g1	1329	1348	1339	-33.50	-24.70	0.737313432835821	5.5	2-14,1347-1335;16-20,1334-1330	1-1,1348-1348[UP5];15-15,x-x[BULq];21-21,1329-1329[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	CUCCGA-GAAGGCGAAAGACA&CGUUUUUCGUCUUCCUUGGAA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN1731_c0_g1_1339_TPlot.pdf
TRINITY_DN1731_c0_g1:1548	si_s82	TRINITY_DN1731_c0_g1	1537	1561	1548	-28.90	-19.38	0.670588235294118	12.5	1-7,1561-1555;9-21,1549-1537	8-8,1554-1550[AILt]	(((((((((((((.....(((((((&)))))))----.)))))))))))))	GAGAAGAAGGAAGAUGACAAAGAGA&UUUCUUU----CCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1731_c0_g1_1548_TPlot.pdf
TRINITY_DN1731_c0_g1:1549	si_s81	TRINITY_DN1731_c0_g1	1538	1562	1549	-28.90	-19.18	0.663667820069204	11.5	1-8,1562-1555;10-21,1549-1538	9-9,1554-1550[AILt]	((((((((((((.....((((((((&))))))))----.))))))))))))	AGAAGAAGGAAGAUGACAAAGAGAA&UUUUCUUU----CCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1731_c0_g1_1549_TPlot.pdf
TRINITY_DN1731_c0_g1:1577	si_a787	TRINITY_DN1731_c0_g1	1565	1588	1577	-26.30	-18.30	0.695817490494297	10	1-5,1588-1584;6-11,1581-1576;12-20,1574-1566	x-x,1583-1582[BULt];x-x,1575-1575[BULt];21-21,1565-1565[UP3]	.(((((((((.((((((..(((((&)))))--))))))-))))))))).	AGGAAGAUGGCAAAGAUAAGGAAG&CUUCU--AUUUUU-CUAUUUUCCA	3	0.999999953479842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1731_c0_g1_1577_TPlot.pdf
TRINITY_DN1731_c0_g1:358	si_s79	TRINITY_DN1731_c0_g1	347	367	358	-26.20	-18.70	0.713740458015267	10	4-16,364-352;18-20,350-348	1-3,367-365[UP5];17-17,351-351[SIL];21-21,347-347[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	UAGAUGAAAGGGAAGAGGCAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1731_c0_g1_358_TPlot.pdf
TRINITY_DN1731_c0_g1:359	si_s78	TRINITY_DN1731_c0_g1	348	369	359	-26.20	-19.10	0.729007633587786	7	1-4,369-366;5-17,364-352;19-21,350-348	x-x,365-365[BULt];18-18,351-351[SIL]	(((.(((((((((((((.((((&))))-))))))))))))).)))	AGAUGAAAGGGAAGAGGCAAGA&UUUU-UUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1731_c0_g1_359_TPlot.pdf
TRINITY_DN1731_c0_g1:4898	si_s485	TRINITY_DN1731_c0_g1	4887	4909	4898	-18.10	-12.30	0.679558011049724	9.5	2-7,4908-4903;8-21,4900-4887	1-1,4909-4909[UP5];x-x,4902-4901[BULt]	((((((((((((((..((((((.&.))))))--))))))))))))))	UUUAUGUUUAAGUAUUGAUGUGU&CUAUAUU--UAUUUAAAUAUAAA	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN1731_c0_g1_4898_TPlot.pdf
TRINITY_DN1731_c0_g1:778	si_s74	TRINITY_DN1731_c0_g1	768	787	778	-25.00	-18.70	0.748	6.5	1-10,787-778;12-20,777-769	11-11,x-x[BULq];21-21,768-768[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	AGAAGGAAAG-GGAAAAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999141658786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1731_c0_g1_778_TPlot.pdf
TRINITY_DN17320_c1_g1:224	si_a66	TRINITY_DN17320_c1_g1	210	233	224	-26.70	-20.20	0.756554307116105	10	2-11,232-223;12-21,219-210	1-1,233-233[UP5];x-x,222-220[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	AGGGACAGUUAUAUGAAAGGAGCA&CGCUUCUUUCA---AAUUGUUUUU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN17320_c1_g1_224_TPlot.pdf
TRINITY_DN17320_c1_g1:225	si_a65	TRINITY_DN17320_c1_g1	211	234	225	-27.70	-19.40	0.700361010830325	12	3-12,232-223;13-21,219-211	1-2,234-233[UP5];x-x,222-220[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	GGGACAGUUAUAUGAAAGGAGCAU&UCGCUUCUUUCA---AAUUGUUUU	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN17320_c1_g1_225_TPlot.pdf
TRINITY_DN17321_c0_g1:1415	si_a187	TRINITY_DN17321_c0_g1	1403	1424	1415	-32.00	-21.30	0.665625	13	7-15,1418-1410;16-21,1408-1403	1-6,1424-1419[UP5];x-x,1409-1409[BULt]	((((((.(((((((((......&......)))))))))-))))))	GGUGGACCAGGGAAAGUAAAUA&UAAUAUCUUUCCCUG-UUCACU	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN17321_c0_g1_1415_TPlot.pdf
TRINITY_DN17321_c0_g1:1722	si_a702	TRINITY_DN17321_c0_g1	1711	1731	1722	-30.80	-22.80	0.74025974025974	5	1-2,1731-1730;4-6,1728-1726;8-20,1724-1712	3-3,1729-1729[SIL];7-7,1725-1725[SIL];21-21,1711-1711[UP3]	.(((((((((((((.(((.((&)).))).))))))))))))).	AAUUUUGGAAUGUAGCAGAUG&CAACUGGUACAUUCCAAAAUA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN17321_c0_g1_1722_TPlot.pdf
TRINITY_DN17323_c0_g1:1908	si_s626	TRINITY_DN17323_c0_g1	1897	1919	1908	-36.10	-24.56	0.680332409972299	16	3-9,1917-1911;13-19,1905-1899	1-2,1919-1918[UP5];10-12,1910-1906[AILt];20-21,1898-1897[UP3]	..(((((((.....(((((((..&..)))))))--...)))))))..	GGGCCUACGUUGUUGGAUCGCAA&AAGCGAUCU--UUUCGUAGGCGU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN17323_c0_g1_1908_TPlot.pdf
TRINITY_DN17323_c0_g1:2384	si_a355	TRINITY_DN17323_c0_g1	2372	2393	2384	-26.80	-17.90	0.667910447761194	9.5	2-10,2392-2384;11-19,2382-2374	1-1,2393-2393[UP5];x-x,2383-2383[BULt];20-21,2373-2372[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	AGCGAUCGAGGUUGGAGUUAAG&AUUAAUUCUA-UUUUGAUCGGA	2	0.966553182246443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN17323_c0_g1_2384_TPlot.pdf
TRINITY_DN17323_c0_g1:2515	si_s677	TRINITY_DN17323_c0_g1	2503	2524	2515	-27.10	-18.50	0.682656826568266	7	2-12,2523-2513;14-19,2510-2505	1-1,2524-2524[UP5];13-13,2512-2511[AILt];20-21,2504-2503[UP3]	..((((((..(((((((((((.&.)))))))))))-.))))))..	ACGGCUCAAGGUUUCUAUAAUA&GAUUAUAGAAAC-AUGAGUUUA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s677_TRINITY_DN17323_c0_g1_2515_TPlot.pdf
TRINITY_DN17323_c0_g1:2516	si_s676	TRINITY_DN17323_c0_g1	2504	2525	2516	-27.40	-18.50	0.675182481751825	7	3-13,2523-2513;15-20,2510-2505	1-2,2525-2524[UP5];14-14,2512-2511[AILt];21-21,2504-2504[UP3]	.((((((..(((((((((((..&..)))))))))))-.)))))).	CGGCUCAAGGUUUCUAUAAUAU&UGAUUAUAGAAAC-AUGAGUUU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s676_TRINITY_DN17323_c0_g1_2516_TPlot.pdf
TRINITY_DN17323_c0_g1:2517	si_s675	TRINITY_DN17323_c0_g1	2505	2526	2517	-27.50	-18.50	0.672727272727273	8	4-14,2523-2513;16-21,2510-2505	1-3,2526-2524[UP5];15-15,2512-2511[AILt]	((((((..(((((((((((...&...)))))))))))-.))))))	GGCUCAAGGUUUCUAUAAUAUA&UUGAUUAUAGAAAC-AUGAGUU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN17323_c0_g1_2517_TPlot.pdf
TRINITY_DN17323_c0_g1:4315	si_s888	TRINITY_DN17323_c0_g1	4304	4326	4315	-26.80	-18.50	0.690298507462687	8	2-7,4325-4320;8-21,4317-4304	1-1,4326-4326[UP5];x-x,4319-4318[BULt]	((((((((((((((..((((((.&.))))))--))))))))))))))	GGGAGGAGGCUUAUGAUUAUUUC&AAAAUAA--AUAGGCUUUCUCUU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN17323_c0_g1_4315_TPlot.pdf
TRINITY_DN17323_c0_g1:6014	si_s607	TRINITY_DN17323_c0_g1	6002	6023	6014	-27.60	-17.96	0.650724637681159	10	1-11,6023-6013;18-21,6005-6002	12-17,6012-6006[AILt]	((((.......(((((((((((&)))))))))))-......))))	UUGGUAUCGACAGAAGAUUCGC&GCGAAUCUUUU-UUAAAUCCAA	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN17323_c0_g1_6014_TPlot.pdf
TRINITY_DN17323_c0_g1:6350	si_a504	TRINITY_DN17323_c0_g1	6335	6359	6350	-32.90	-22.10	0.671732522796353	12.5	1-12,6359-6348;13-19,6343-6337;21-21,6335-6335	x-x,6347-6344[BULt];20-20,6336-6336[SIL]	(.(((((((....((((((((((((&))))))))))))----))))))).)	AGAUUCCAGGACUGGAAGAUGAGGA&UUUUCGUCUUCC----UUGGAAUGU	4	0.999976817192693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN17323_c0_g1_6350_TPlot.pdf
TRINITY_DN17323_c0_g1:6351	si_a503	TRINITY_DN17323_c0_g1	6336	6360	6351	-32.10	-22.30	0.694704049844237	9	1-13,6360-6348;14-20,6343-6337	x-x,6347-6344[BULt];21-21,6336-6336[UP3]	.(((((((....(((((((((((((&)))))))))))))----))))))).	GAUUCCAGGACUGGAAGAUGAGGAG&UUUUUCGUCUUCC----UUGGAAUG	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN17323_c0_g1_6351_TPlot.pdf
TRINITY_DN17323_c0_g1:6352	si_a502	TRINITY_DN17323_c0_g1	6337	6361	6352	-32.10	-21.80	0.679127725856698	9.5	2-14,6360-6348;15-21,6343-6337	1-1,6361-6361[UP5];x-x,6347-6344[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	AUUCCAGGACUGGAAGAUGAGGAGU&GUUUUUCGUCUUCC----UUGGAAU	2	0.999993366716197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN17323_c0_g1_6352_TPlot.pdf
TRINITY_DN1732_c0_g1:177	si_a323	TRINITY_DN1732_c0_g1	166	186	177	-26.80	-17.60	0.656716417910448	7	1-15,186-172	16-21,171-166[UP3]	......(((((((((((((((&)))))))))))))))......	AAUAUUUAAGAAAAUCAUGGA&UCCAUGAUUUUUUUAUUCCUU	2	0.999992940807132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN1732_c0_g1_177_TPlot.pdf
TRINITY_DN1732_c0_g1:182	si_a318	TRINITY_DN1732_c0_g1	171	191	182	-22.50	-21.70	0.964444444444444	4.5	2-20,190-172	1-1,191-191[UP5];21-21,171-171[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UUAAGAAAAUCAUGGAUGGAG&AUUUAUCCAUGAUUUUUUUAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1732_c0_g1_182_TPlot.pdf
TRINITY_DN1732_c0_g1:186	si_a314	TRINITY_DN1732_c0_g1	175	194	186	-27.10	-19.00	0.701107011070111	7.5	2-3,193-192;6-21,190-175	1-1,194-194[UP5];4-5,191-191[AILq]	((((((((((((((((.-((.&.))..))))))))))))))))	GAAAAUCAUGGAUGGAG-CAG&UUGGAUUUAUCCAUGAUUUUU	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN1732_c0_g1_186_TPlot.pdf
TRINITY_DN1732_c0_g1:467	si_s70	TRINITY_DN1732_c0_g1	456	476	467	-25.80	-17.20	0.666666666666667	8.5	3-5,474-472;8-21,469-456	1-2,476-475[UP5];6-7,471-470[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	GGAAAGAGAAGAAAAUGAAAC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1732_c0_g1_467_TPlot.pdf
TRINITY_DN1732_c0_g1:5715	si_a349	TRINITY_DN1732_c0_g1	5703	5724	5715	-21.30	-14.70	0.690140845070423	5.5	1-6,5724-5719;8-17,5717-5708;18-21,5706-5703	7-7,5718-5718[SIL];x-x,5707-5707[BULt]	((((.((((((((((.((((((&)))))).))))))))))-))))	CAAAUAUGGAAUUGGAAUUUUC&GAAAAUAUUAAUUCUAU-UUUG	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN1732_c0_g1_5715_TPlot.pdf
TRINITY_DN1732_c0_g5:1461	si_s508	TRINITY_DN1732_c0_g5	1450	1470	1461	-22.80	-16.20	0.710526315789474	6	2-12,1469-1459;14-18,1457-1453	1-1,1470-1470[UP5];13-13,1458-1458[SIL];19-21,1452-1450[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	AGGAAGAAAAUGGAAUUGUUG&AAACAAUUCUAUAUUCUUAAU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN1732_c0_g5_1461_TPlot.pdf
TRINITY_DN17331_c0_g1:121	si_s508	TRINITY_DN17331_c0_g1	110	130	121	-22.80	-15.50	0.679824561403509	10.5	3-4,128-127;7-18,124-113	1-2,130-129[UP5];5-6,126-125[SIL];19-21,112-110[UP3]	...((((((((((((..((..&..))..))))))))))))...	UUGGAGAAUAUAGAAGAGUGA&AAACAAUUCUAUAUUCUUAAU	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN17331_c0_g1_121_TPlot.pdf
TRINITY_DN17344_c3_g4:153	si_a701	TRINITY_DN17344_c3_g4	142	162	153	-31.20	-21.80	0.698717948717949	9	1-2,162-161;5-13,158-150;15-18,148-145	3-4,160-159[SIL];14-14,149-149[SIL];19-21,144-142[UP3]	...((((.(((((((((..((&))..))))))))).))))...	UCGUUGGUAUGUGCCAGGGGU&ACAACUGGUACAUUCCAAAAU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN17344_c3_g4_153_TPlot.pdf
TRINITY_DN17344_c3_g4:156	si_a698	TRINITY_DN17344_c3_g4	145	165	156	-33.60	-26.10	0.776785714285714	7	2-5,164-161;8-16,158-150;18-21,148-145	1-1,165-165[UP5];6-7,160-159[SIL];17-17,149-149[SIL]	((((.(((((((((..((((.&.))))..))))))))).))))	UUGGUAUGUGCCAGGGGUGUA&AACACAACUGGUACAUUCCAA	0	0.00299728134570687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a698_TRINITY_DN17344_c3_g4_156_TPlot.pdf
TRINITY_DN17344_c3_g4:157	si_a697	TRINITY_DN17344_c3_g4	146	166	157	-35.50	-25.30	0.712676056338028	8.5	3-6,164-161;9-17,158-150;19-21,148-146	1-2,166-165[UP5];7-8,160-159[SIL];18-18,149-149[SIL]	(((.(((((((((..((((..&..))))..))))))))).)))	UGGUAUGUGCCAGGGGUGUAG&GAACACAACUGGUACAUUCCA	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN17344_c3_g4_157_TPlot.pdf
TRINITY_DN17344_c3_g4:158	si_a696	TRINITY_DN17344_c3_g4	147	167	158	-36.30	-23.80	0.65564738292011	10.5	4-7,164-161;10-18,158-150;20-21,148-147	1-3,167-165[UP5];8-9,160-159[SIL];19-19,149-149[SIL]	((.(((((((((..((((...&...))))..))))))))).))	GGUAUGUGCCAGGGGUGUAGU&CGAACACAACUGGUACAUUCC	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a696_TRINITY_DN17344_c3_g4_158_TPlot.pdf
TRINITY_DN17344_c3_g4:161	si_a735	TRINITY_DN17344_c3_g4	149	170	161	-41.70	-28.00	0.671462829736211	7	1-3,170-168;5-6,166-165;8-17,163-154;18-21,152-149	4-4,167-167[SIL];7-7,164-164[SIL];x-x,153-153[BULt]	((((.((((((((((.((.(((&))).)).))))))))))-))))	UAUGUGCCAGGGGUGUAGUUGU&GCAUCUUUACCCCUGGC-CAUG	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN17344_c3_g4_161_TPlot.pdf
TRINITY_DN1734_c0_g1:3057	si_a763	TRINITY_DN1734_c0_g1	3046	3066	3057	-28.80	-18.80	0.652777777777778	9	1-4,3066-3063;6-16,3061-3051;18-20,3049-3047	5-5,3062-3062[SIL];17-17,3050-3050[SIL];21-21,3046-3046[UP3]	.(((.(((((((((((.((((&)))).))))))))))).))).	AGAACCAGUCGGAGACGCAGG&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1734_c0_g1_3057_TPlot.pdf
TRINITY_DN1734_c0_g1:3086	si_s72	TRINITY_DN1734_c0_g1	3074	3095	3086	-24.10	-16.00	0.663900414937759	8	1-12,3095-3084;13-18,3082-3077	x-x,3083-3083[BULt];19-21,3076-3074[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AACGAAAGAGGAAAAGAUGGAA&UUCUAUUUUUUU-UCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1734_c0_g1_3086_TPlot.pdf
TRINITY_DN1734_c0_g1:3089	si_s69	TRINITY_DN1734_c0_g1	3077	3098	3089	-23.40	-16.20	0.692307692307692	8.5	4-15,3095-3084;16-21,3082-3077	1-3,3098-3096[UP5];x-x,3083-3083[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAAAGAGGAAAAGAUGGAAUGG&AACUUCUAUUUUUUU-UCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1734_c0_g1_3089_TPlot.pdf
TRINITY_DN1734_c0_g1:3176	si_a875	TRINITY_DN1734_c0_g1	3165	3184	3176	-27.10	-18.80	0.693726937269373	7	3-7,3182-3178;9-20,3177-3166	1-2,3184-3183[UP5];8-8,x-x[BULq];21-21,3165-3165[UP3]	.((((((((((((-(((((..&..))))).)))))))))))).	GAUUGAUUGUAAC-AAAUCAU&AAGAUUUAGUUGCAAUCAAUA	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN1734_c0_g1_3176_TPlot.pdf
TRINITY_DN1734_c0_g1:800	si_a344	TRINITY_DN1734_c0_g1	789	810	800	-28.50	-19.00	0.666666666666667	4.5	1-4,810-807;5-12,805-798;14-15,796-795;17-21,793-789	x-x,806-806[BULt];13-13,797-797[SIL];16-16,794-794[SIL]	(((((.((.((((((((.((((&))))-)))))))).)).)))))	UAGAAAUGUUAUUUUCGUGGAC&GUCC-CGAAAAUAUUAAUUCUA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN1734_c0_g1_800_TPlot.pdf
TRINITY_DN17354_c0_g1:1751	si_a75	TRINITY_DN17354_c0_g1	1740	1760	1751	-21.30	-15.90	0.746478873239437	4	1-12,1760-1749;14-20,1747-1741	13-13,1748-1748[SIL];21-21,1740-1740[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GUAGUAGUCAAGAACAAUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN17354_c0_g1_1751_TPlot.pdf
TRINITY_DN17354_c4_g1:435	si_a787	TRINITY_DN17354_c4_g1	424	442	435	-26.30	-17.70	0.673003802281369	8.5	1-4,442-439;8-20,437-425	5-7,438-438[AILq];21-21,424-424[UP3]	.(((((((((((((.--((((&))))...))))))))))))).	GGGAAAGUAGGAAAC--GAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999999766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN17354_c4_g1_435_TPlot.pdf
TRINITY_DN17354_c4_g1:667	si_a785	TRINITY_DN17354_c4_g1	656	677	667	-25.90	-17.50	0.675675675675676	8.5	1-6,677-672;7-17,670-660	x-x,671-671[BULt];18-21,659-656[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	AGACAUGGAGAGAUAUGAAGAG&CUCUUC-UAUUUUUCUAUUUUC	2	0.999999996394785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN17354_c4_g1_667_TPlot.pdf
TRINITY_DN17354_c4_g1:668	si_a784	TRINITY_DN17354_c4_g1	657	678	668	-24.70	-18.10	0.732793522267207	8	2-7,677-672;8-18,670-660	1-1,678-678[UP5];x-x,671-671[BULt];19-21,659-657[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	GACAUGGAGAGAUAUGAAGAGC&ACUCUUC-UAUUUUUCUAUUUU	4	0.999985579703665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN17354_c4_g1_668_TPlot.pdf
TRINITY_DN17354_c4_g1:669	si_a783	TRINITY_DN17354_c4_g1	658	679	669	-24.70	-18.10	0.732793522267207	9	3-8,677-672;9-19,670-660	1-2,679-678[UP5];x-x,671-671[BULt];20-21,659-658[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	ACAUGGAGAGAUAUGAAGAGCA&AACUCUUC-UAUUUUUCUAUUU	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN17354_c4_g1_669_TPlot.pdf
TRINITY_DN1735_c0_g1:1674	si_a219	TRINITY_DN1735_c0_g1	1663	1683	1674	-25.10	-17.10	0.681274900398406	11	5-11,1679-1673;13-21,1671-1663	1-4,1683-1680[UP5];12-12,1672-1672[SIL]	(((((((((.(((((((....&....))))))).)))))))))	AUGGGAGCGCGAGUUUACUUG&UAAUUAAACUCAUGUUUCUAU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN1735_c0_g1_1674_TPlot.pdf
TRINITY_DN1735_c0_g1:473	si_a638	TRINITY_DN1735_c0_g1	461	481	473	-24.40	-16.80	0.688524590163935	7.5	1-8,481-474;11-17,472-466;18-21,464-461	9-10,473-473[AILq];x-x,465-465[BULt]	((((.(((((((.-((((((((&))))))))..)))))))-))))	UAUACUUGCUCAU-GAGAUCGA&UCGAUUUUUUUGAGUAA-UAUA	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN1735_c0_g1_473_TPlot.pdf
TRINITY_DN17370_c0_g2:156	si_a410	TRINITY_DN17370_c0_g2	145	165	156	-17.80	-11.80	0.662921348314607	4	1-15,165-151;17-19,149-147	16-16,150-150[SIL];20-21,146-145[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AAUAUAUAAAUAUAAAUAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999352856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN17370_c0_g2_156_TPlot.pdf
TRINITY_DN17374_c0_g1:251	si_a457	TRINITY_DN17374_c0_g1	240	260	251	-23.50	-15.80	0.672340425531915	10	4-7,257-254;9-21,252-240	1-3,260-258[UP5];8-8,253-253[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GCAUGUUAUAUAUUGCAGAGU&UUGUUGUUAUAUAUAAUAUGU	1	0.0613604488699827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN17374_c0_g1_251_TPlot.pdf
TRINITY_DN17377_c0_g1:1235	si_s73	TRINITY_DN17377_c0_g1	1224	1244	1235	-24.00	-16.30	0.679166666666667	14.5	6-19,1239-1226	1-5,1244-1240[UP5];20-21,1225-1224[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUAGGAGAGAGAGAGAGACGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN17377_c0_g1_1235_TPlot.pdf
TRINITY_DN17377_c0_g1:1236	si_s72	TRINITY_DN17377_c0_g1	1225	1245	1236	-24.10	-16.30	0.676348547717842	15.5	7-20,1239-1226	1-6,1245-1240[UP5];21-21,1225-1225[UP3]	.((((((((((((((......&......)))))))))))))).	UAGGAGAGAGAGAGAGACGAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN17377_c0_g1_1236_TPlot.pdf
TRINITY_DN17377_c0_g1:1237	si_s79	TRINITY_DN17377_c0_g1	1225	1246	1237	-26.20	-17.80	0.679389312977099	14	6-11,1241-1236;12-20,1234-1226	1-5,1246-1242[UP5];x-x,1235-1235[BULt];21-21,1225-1225[UP3]	.(((((((((.((((((.....&.....))))))-))))))))).	UAGGAGAGAGAGAGAGACGACU&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN17377_c0_g1_1237_TPlot.pdf
TRINITY_DN1737_c0_g2:1733	si_a85	TRINITY_DN1737_c0_g2	1721	1742	1733	-25.00	-16.40	0.656	7	2-11,1741-1732;13-19,1729-1723	1-1,1742-1742[UP5];12-12,1731-1730[AILt];20-21,1722-1721[UP3]	..(((((((..((((((((((.&.))))))))))-.)))))))..	UAACCUUUUGAUUAAUAAUGAU&UUCAUUAUUAA-GAAAAGGUAA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN1737_c0_g2_1733_TPlot.pdf
TRINITY_DN1737_c0_g2:2080	si_a606	TRINITY_DN1737_c0_g2	2069	2089	2080	-32.60	-21.60	0.662576687116564	6.5	1-9,2089-2081;12-21,2078-2069	10-11,2080-2079[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	UGGUUGAUUGUUAUUGUGAAG&UUUCGCAAUUCCAAUCGACUA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN1737_c0_g2_2080_TPlot.pdf
TRINITY_DN17380_c0_g1:132	si_a86	TRINITY_DN17380_c0_g1	121	142	132	-26.60	-19.00	0.714285714285714	6	1-7,142-136;8-20,134-122	x-x,135-135[BULt];21-21,121-121[UP3]	.(((((((((((((.(((((((&)))))))-))))))))))))).	AUUACCUUUUUUUGCAUAGUGA&UCAUUAU-UAAGAAAAGGUAAC	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN17380_c0_g1_132_TPlot.pdf
TRINITY_DN17380_c0_g1:133	si_a85	TRINITY_DN17380_c0_g1	122	143	133	-25.00	-19.70	0.788	5	1-8,143-136;9-21,134-122	x-x,135-135[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	UUACCUUUUUUUGCAUAGUGAA&UUCAUUAU-UAAGAAAAGGUAA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN17380_c0_g1_133_TPlot.pdf
TRINITY_DN17380_c0_g1:136	si_a83	TRINITY_DN17380_c0_g1	124	145	136	-24.50	-17.50	0.714285714285714	7.5	3-10,143-136;11-21,134-124	1-2,145-144[UP5];x-x,135-135[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	ACCUUUUUUUGCAUAGUGAACA&UUUUCAUUAU-UAAGAAAAGGU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN17380_c0_g1_136_TPlot.pdf
TRINITY_DN1738_c0_g1:1514	si_a665	TRINITY_DN1738_c0_g1	1492	1523	1514	-29.60	-21.50	0.726351351351351	22	1-11,1523-1513;12-21,1501-1492	x-x,1512-1502[BULt]	((((((((((...........(((((((((((&)))))))))))-----------))))))))))	AAUAAGGAAUAUGAACUUAAACAAUAGGCAUU&AAUGCCUAUUG-----------AUUCCUUAUU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN1738_c0_g1_1514_TPlot.pdf
TRINITY_DN1738_c0_g1:1516	si_a663	TRINITY_DN1738_c0_g1	1494	1525	1516	-31.40	-21.90	0.697452229299363	11.5	1-13,1525-1513;14-21,1501-1494	x-x,1512-1502[BULt]	((((((((...........(((((((((((((&)))))))))))))-----------))))))))	UAAGGAAUAUGAACUUAAACAAUAGGCAUUUU&GAAAUGCCUAUUG-----------AUUCCUUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN1738_c0_g1_1516_TPlot.pdf
TRINITY_DN1738_c0_g1:38	si_a788	TRINITY_DN1738_c0_g1	26	47	38	-24.80	-16.60	0.669354838709677	7	1-12,47-36;17-20,30-27	13-16,35-31[AILt];21-21,26-26[UP3]	.((((.....((((((((((((&))))))))))))-....)))).	CUGGAUUUCCAGAAAAAUAGAA&UUCUAUUUUUCU-AUUUUCCAA	4	0.999999999998471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1738_c0_g1_38_TPlot.pdf
TRINITY_DN1738_c0_g1:39	si_a787	TRINITY_DN1738_c0_g1	27	48	39	-26.30	-18.80	0.714828897338403	5	1-13,48-36;18-21,30-27	14-17,35-31[AILt]	((((.....(((((((((((((&)))))))))))))-....))))	UGGAUUUCCAGAAAAAUAGAAG&CUUCUAUUUUUCU-AUUUUCCA	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1738_c0_g1_39_TPlot.pdf
TRINITY_DN1738_c0_g1:40	si_a786	TRINITY_DN1738_c0_g1	28	49	40	-26.60	-17.30	0.650375939849624	6	2-14,48-36;19-21,30-28	1-1,49-49[UP5];15-18,35-31[AILt]	(((.....(((((((((((((.&.)))))))))))))-....)))	GGAUUUCCAGAAAAAUAGAAGU&UCUUCUAUUUUUCU-AUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1738_c0_g1_40_TPlot.pdf
TRINITY_DN1738_c0_g1:42	si_s68	TRINITY_DN1738_c0_g1	31	51	42	-23.10	-18.00	0.779220779220779	5.5	1-16,51-36	17-21,35-31[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUCCAGAAAAAUAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1738_c0_g1_42_TPlot.pdf
TRINITY_DN1738_c0_g1:445	si_a20	TRINITY_DN1738_c0_g1	434	455	445	-26.70	-17.60	0.659176029962547	6.5	1-5,455-451;6-15,449-440;17-20,438-435	x-x,450-450[BULt];16-16,439-439[SIL];21-21,434-434[UP3]	.((((.((((((((((.(((((&)))))-)))))))))).)))).	AAGAAAUGAAAGUAAAUUGGGC&GCCUA-UUUAUUUUUAGUUCUA	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1738_c0_g1_445_TPlot.pdf
TRINITY_DN1738_c0_g1:45	si_s65	TRINITY_DN1738_c0_g1	34	54	45	-26.00	-18.00	0.692307692307692	7.5	4-19,51-36	1-3,54-52[UP5];20-21,35-34[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCAGAAAAAUAGAAGUUGGCA&UAGCAACUUCUAUUUUUUUUC	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN1738_c0_g1_45_TPlot.pdf
TRINITY_DN1738_c0_g1:548	si_a67	TRINITY_DN1738_c0_g1	539	557	548	-27.20	-18.20	0.669117647058823	7.5	1-11,557-547;14-19,546-541	12-13,x-x[BULq];20-21,540-539[UP3]	..((((((--(((((((((((&)))))))))))..))))))..	CUGAAACA--UUGAGAGAGGC&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999892823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1738_c0_g1_548_TPlot.pdf
TRINITY_DN17396_c0_g1:1276	si_s71	TRINITY_DN17396_c0_g1	1252	1285	1276	-25.70	-16.80	0.653696498054475	18.5	1-13,1285-1273;14-21,1259-1252	x-x,1272-1260[BULt]	((((((((.............(((((((((((((&)))))))))))))-------------))))))))	GGGGAAGAGACUAAACUUAAAGAGAAAGUGGGAG&CUUCUAUUUUUUU-------------UCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN17396_c0_g1_1276_TPlot.pdf
TRINITY_DN17396_c0_g1:2165	si_s438	TRINITY_DN17396_c0_g1	2154	2174	2165	-21.20	-14.60	0.688679245283019	11.5	5-13,2170-2162;15-21,2160-2154	1-4,2174-2171[UP5];14-14,2161-2161[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GUUAUGUUUGAUGUGUGCGGU&UAAUUACAUAUUAUAUAUAAC	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN17396_c0_g1_2165_TPlot.pdf
TRINITY_DN1739_c0_g1:1082	si_s75	TRINITY_DN1739_c0_g1	1069	1091	1082	-24.00	-17.00	0.708333333333333	7.5	1-10,1091-1082;11-15,1080-1076;16-21,1074-1069	x-x,1081-1081[BULt];x-x,1075-1075[BULt]	((((((.(((((.((((((((((&))))))))))-)))))-))))))	AGAAAGUGAGGGUAGGAGAAAUA&UAUUUUUUUU-CUUUC-CUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1739_c0_g1_1082_TPlot.pdf
TRINITY_DN1739_c0_g1:1085	si_s72	TRINITY_DN1739_c0_g1	1072	1094	1085	-24.10	-16.50	0.684647302904564	7	1-13,1094-1082;14-18,1080-1076;19-21,1074-1072	x-x,1081-1081[BULt];x-x,1075-1075[BULt]	(((.(((((.(((((((((((((&)))))))))))))-)))))-)))	AAGUGAGGGUAGGAGAAAUAGGA&UUCUAUUUUUUUU-CUUUC-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1739_c0_g1_1085_TPlot.pdf
TRINITY_DN1739_c0_g1:1090	si_a783	TRINITY_DN1739_c0_g1	1079	1098	1090	-24.70	-16.20	0.65587044534413	9	2-3,1097-1096;5-17,1095-1083	1-1,1098-1098[UP5];4-4,x-x[BULq];18-21,1082-1079[UP3]	....(((((((((((((-((.&.)).)))))))))))))....	GGUAGGAGAAAUAGGAG-GUA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN1739_c0_g1_1090_TPlot.pdf
TRINITY_DN1739_c0_g1:1439	si_a800	TRINITY_DN1739_c0_g1	1427	1448	1439	-33.70	-25.20	0.747774480712166	9	2-7,1447-1442;10-12,1439-1437;13-21,1435-1427	1-1,1448-1448[UP5];8-9,1441-1440[SIL];x-x,1436-1436[BULt]	(((((((((.(((..((((((.&.))))))..)))-)))))))))	CUUCGCUUCAGGAGCGGAGGAA&AUUUUCCAAUCC-GAAGCGAAG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN1739_c0_g1_1439_TPlot.pdf
TRINITY_DN1739_c0_g1:2001	si_a405	TRINITY_DN1739_c0_g1	1990	2010	2001	-19.80	-12.90	0.651515151515151	10	2-14,2009-1997	1-1,2010-2010[UP5];15-21,1996-1990[UP3]	.......(((((((((((((.&.))))))))))))).......	UUUUUACUAAACAAGACAGUC&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1739_c0_g1_2001_TPlot.pdf
TRINITY_DN173_c0_g1:1269	si_s69	TRINITY_DN173_c0_g1	1258	1278	1269	-23.40	-16.00	0.683760683760684	8.5	3-17,1276-1262	1-2,1278-1277[UP5];18-21,1261-1258[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUUUGGAAAAAAAUGGAAGAG&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN173_c0_g1_1269_TPlot.pdf
TRINITY_DN173_c0_g1:1270	si_s68	TRINITY_DN173_c0_g1	1259	1279	1270	-23.10	-16.00	0.692640692640693	9.5	4-18,1276-1262	1-3,1279-1277[UP5];19-21,1261-1259[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUUGGAAAAAAAUGGAAGAGC&CAACUUCUAUUUUUUUUCUUU	2	0.999999963949566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN173_c0_g1_1270_TPlot.pdf
TRINITY_DN173_c0_g1:1271	si_s67	TRINITY_DN173_c0_g1	1260	1279	1271	-25.60	-17.20	0.671875	7.5	1-2,1279-1278;5-19,1276-1262	3-4,1277-1277[AILq];20-21,1261-1260[UP3]	..(((((((((((((((.-((&))..)))))))))))))))..	UUGGAAAAAAAUGGAAGA-GC&GCAACUUCUAUUUUUUUUCUU	3	0.999999999814868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN173_c0_g1_1271_TPlot.pdf
TRINITY_DN173_c0_g1:1272	si_s66	TRINITY_DN173_c0_g1	1261	1280	1272	-26.30	-17.30	0.657794676806084	7.5	2-3,1279-1278;6-20,1276-1262	1-1,1280-1280[UP5];4-5,1277-1277[AILq];21-21,1261-1261[UP3]	.(((((((((((((((.-((.&.))..))))))))))))))).	UGGAAAAAAAUGGAAGA-GCA&AGCAACUUCUAUUUUUUUUCU	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN173_c0_g1_1272_TPlot.pdf
TRINITY_DN173_c0_g1:1899	si_a409	TRINITY_DN173_c0_g1	1886	1908	1899	-19.50	-14.20	0.728205128205128	6	1-13,1908-1896;14-20,1893-1887	x-x,1895-1894[BULt];21-21,1886-1886[UP3]	.(((((((..(((((((((((((&)))))))))))))--))))))).	GUAUUUGAUAGUAUGAAUAAAAC&GUUUUGUUUAUAU--UUAAAUAA	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN173_c0_g1_1899_TPlot.pdf
TRINITY_DN17403_c0_g1:205	si_a749	TRINITY_DN17403_c0_g1	190	225	205	-42.10	-28.90	0.68646080760095	31.5	1-5,225-221;6-12,209-203;13-21,198-190	x-x,220-210[BULt];x-x,202-199[BULt]	(((((((((....(((((((...........(((((&)))))-----------)))))))----)))))))))	ACCCAAGGGUCAGGGGUUCAAAUCCCAGCCCUGGCC&GGCCA-----------UGAACCU----CCUUUGGGU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN17403_c0_g1_205_TPlot.pdf
TRINITY_DN17413_c0_g1:341	si_a409	TRINITY_DN17413_c0_g1	330	350	341	-19.50	-13.00	0.666666666666667	8	2-19,349-332	1-1,350-350[UP5];20-21,331-330[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAAUUUGGAUAUGAAUGAAGA&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN17413_c0_g1_341_TPlot.pdf
TRINITY_DN1741_c0_g1:1769	si_s70	TRINITY_DN1741_c0_g1	1756	1778	1769	-25.80	-17.18	0.665891472868217	10.5	1-6,1778-1773;8-10,1771-1769;13-21,1764-1756	7-7,1772-1772[SIL];11-12,1768-1765[AILt]	(((((((((....(((.((((((&)))))).)))--..)))))))))	GGAAAGAGAUAGUAAACAGAAGU&ACUUCUAUUU--UUUUUCUUUCC	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1741_c0_g1_1769_TPlot.pdf
TRINITY_DN1741_c0_g1:2043	si_s774	TRINITY_DN1741_c0_g1	2032	2052	2043	-24.70	-16.20	0.65587044534413	11	3-15,2050-2038	1-2,2052-2051[UP5];16-21,2037-2032[UP3]	......(((((((((((((..&..)))))))))))))......	AGAGUCUAGCGAUAGUAGUAG&UAAUUACUAUUGCUAUAAAAC	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN1741_c0_g1_2043_TPlot.pdf
TRINITY_DN1741_c0_g1:2088	si_s84	TRINITY_DN1741_c0_g1	2076	2097	2088	-32.30	-23.80	0.736842105263158	7.5	3-10,2095-2088;11-20,2086-2077	1-2,2097-2096[UP5];x-x,2087-2087[BULt];21-21,2076-2076[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	AGAAGAGGAAGAAGAGGAAAAA&UCUUUCCUUU-CUUCUUCUUCG	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1741_c0_g1_2088_TPlot.pdf
TRINITY_DN1741_c0_g1:2128	si_a403	TRINITY_DN1741_c0_g1	2117	2137	2128	-22.00	-14.80	0.672727272727273	11	2-11,2136-2127;13-17,2125-2121	1-1,2137-2137[UP5];12-12,2126-2126[SIL];18-21,2120-2117[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	GACAGUGAAGAGAGCGAUUCC&AGAAUUGUUUUGUUUAUAUUU	3	0.999999999975049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN1741_c0_g1_2128_TPlot.pdf
TRINITY_DN1741_c0_g1:2129	si_a402	TRINITY_DN1741_c0_g1	2118	2138	2129	-22.40	-14.80	0.660714285714286	11	3-12,2136-2127;14-18,2125-2121	1-2,2138-2137[UP5];13-13,2126-2126[SIL];19-21,2120-2118[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	ACAGUGAAGAGAGCGAUUCCA&UAGAAUUGUUUUGUUUAUAUU	2	0.999999914910541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN1741_c0_g1_2129_TPlot.pdf
TRINITY_DN1741_c0_g1:2130	si_a401	TRINITY_DN1741_c0_g1	2119	2139	2130	-22.60	-14.80	0.654867256637168	12	4-13,2136-2127;15-19,2125-2121	1-3,2139-2137[UP5];14-14,2126-2126[SIL];20-21,2120-2119[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	CAGUGAAGAGAGCGAUUCCAG&AUAGAAUUGUUUUGUUUAUAU	2	0.999999948919079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1741_c0_g1_2130_TPlot.pdf
TRINITY_DN1742_c0_g1:1184	si_a787	TRINITY_DN1742_c0_g1	1169	1193	1184	-26.30	-17.54	0.666920152091255	13.5	1-12,1193-1182;16-21,1174-1169	13-15,1181-1175[AILt]	((((((.......((((((((((((&))))))))))))----...))))))	UGGGAAUUCAAGUGGAAAGUAGAAG&CUUCUAUUUUUC----UAUUUUCCA	4	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1742_c0_g1_1184_TPlot.pdf
TRINITY_DN1742_c0_g1:1423	si_a414	TRINITY_DN1742_c0_g1	1412	1435	1423	-18.10	-12.70	0.701657458563536	10.5	1-5,1435-1431;6-19,1427-1414	x-x,1430-1428[BULt];20-21,1413-1412[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	AUUGUUUAUUUAAAUAAAAUGAGC&GUUUA---UAUUUAAAUAAAUAUA	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN1742_c0_g1_1423_TPlot.pdf
TRINITY_DN1742_c0_g1:1424	si_a413	TRINITY_DN1742_c0_g1	1413	1436	1424	-18.40	-12.80	0.695652173913044	10.5	2-6,1435-1431;7-20,1427-1414	1-1,1436-1436[UP5];x-x,1430-1428[BULt];21-21,1413-1413[UP3]	.((((((((((((((...(((((.&.)))))---)))))))))))))).	UUGUUUAUUUAAAUAAAAUGAGCG&UGUUUA---UAUUUAAAUAAAUAU	2	0.971901658198758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN1742_c0_g1_1424_TPlot.pdf
TRINITY_DN1742_c0_g1:1425	si_a412	TRINITY_DN1742_c0_g1	1414	1437	1425	-18.30	-14.20	0.775956284153005	9.5	1-7,1437-1431;8-21,1427-1414	x-x,1430-1428[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	UGUUUAUUUAAAUAAAAUGAGCGA&UUGUUUA---UAUUUAAAUAAAUA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN1742_c0_g1_1425_TPlot.pdf
TRINITY_DN1742_c0_g1:1426	si_a411	TRINITY_DN1742_c0_g1	1415	1438	1426	-17.90	-13.90	0.776536312849162	9.5	1-8,1438-1431;9-21,1427-1415	x-x,1430-1428[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	GUUUAUUUAAAUAAAAUGAGCGAA&UUUGUUUA---UAUUUAAAUAAAU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1742_c0_g1_1426_TPlot.pdf
TRINITY_DN17435_c0_g1:1198	si_s706	TRINITY_DN17435_c0_g1	1187	1207	1198	-29.40	-19.90	0.67687074829932	13	6-9,1202-1199;11-20,1197-1188	1-5,1207-1203[UP5];10-10,1198-1198[SIL];21-21,1187-1187[UP3]	.((((((((((.((((.....&.....)))).)))))))))).	CUUCCCUGUUCCCUGACGACU&AUUUAUUAGUGAACAGGGAAA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN17435_c0_g1_1198_TPlot.pdf
TRINITY_DN17435_c0_g1:2041	si_s79	TRINITY_DN17435_c0_g1	2026	2050	2041	-26.20	-17.10	0.652671755725191	8	1-14,2050-2037;15-16,2033-2032;18-21,2029-2026	x-x,2036-2034[BULt];17-17,2031-2030[AILt]	((((..((...((((((((((((((&))))))))))))))---))-.))))	AGGAUUGAGUCGAGGAAAGAAAGGA&UUUUUUCUUUCCUU---UC-UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN17435_c0_g1_2041_TPlot.pdf
TRINITY_DN17444_c0_g1:1265	si_a451	TRINITY_DN17444_c0_g1	1254	1274	1265	-23.60	-17.00	0.720338983050847	8	4-20,1271-1255	1-3,1274-1272[UP5];21-21,1254-1254[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGUAUAUGACAAUAAUUAAAU&AGAUAAUUGUUGUUAUAUAUA	0	0.0568545370115654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN17444_c0_g1_1265_TPlot.pdf
TRINITY_DN17444_c0_g1:1267	si_a472	TRINITY_DN17444_c0_g1	1256	1276	1267	-21.50	-16.80	0.781395348837209	2.5	1-4,1276-1273;6-21,1271-1256	5-5,1272-1272[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	UAUAUGACAAUAAUUAAAUAU&AUAUGUAAUUAUUGUUAUAUA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN17444_c0_g1_1267_TPlot.pdf
TRINITY_DN17444_c0_g1:1268	si_a471	TRINITY_DN17444_c0_g1	1257	1277	1268	-21.10	-15.60	0.739336492890995	3.5	2-5,1276-1273;7-21,1271-1257	1-1,1277-1277[UP5];6-6,1272-1272[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AUAUGACAAUAAUUAAAUAUA&AAUAUGUAAUUAUUGUUAUAU	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN17444_c0_g1_1268_TPlot.pdf
TRINITY_DN17444_c0_g1:1269	si_a470	TRINITY_DN17444_c0_g1	1258	1280	1269	-21.30	-15.30	0.71830985915493	6	1-8,1280-1273;9-21,1270-1258	x-x,1272-1271[BULt]	(((((((((((((..((((((((&))))))))--)))))))))))))	UAUGACAAUAAUUAAAUAUAUUG&UAAUAUGU--AAUUAUUGUUAUA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN17444_c0_g1_1269_TPlot.pdf
TRINITY_DN1744_c0_g2:4077	si_a67	TRINITY_DN1744_c0_g2	4066	4087	4077	-27.20	-20.70	0.761029411764706	5	1-9,4087-4079;10-20,4077-4067	x-x,4078-4078[BULt];21-21,4066-4066[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AGAAAGCAGUUUAGAAAGAAGU&GCUUCUUUC-AAAUUGUUUUUC	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1744_c0_g2_4077_TPlot.pdf
TRINITY_DN1744_c0_g2:5171	si_a548	TRINITY_DN1744_c0_g2	5160	5180	5171	-27.20	-18.60	0.683823529411765	8	1-8,5180-5173;10-11,5171-5170;13-21,5168-5160	9-9,5172-5172[SIL];12-12,5169-5169[SIL]	(((((((((.((.((((((((&)))))))).)).)))))))))	GAGAUGAAGUAGCGGGUUGAG&UUCAAUCUAUUUCUUUAUCUC	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN1744_c0_g2_5171_TPlot.pdf
TRINITY_DN1744_c1_g1:396	si_s493	TRINITY_DN1744_c1_g1	385	405	396	-19.80	-13.40	0.676767676767677	8	4-10,402-396;12-20,394-386	1-3,405-403[UP5];11-11,395-395[SIL];21-21,385-385[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	GUGUUUUGUUGAUAUUUAUCU&AUUUAAAUAUAAACAAAACAA	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN1744_c1_g1_396_TPlot.pdf
TRINITY_DN1744_c6_g1:251	si_a755	TRINITY_DN1744_c6_g1	240	264	251	-34.90	-23.80	0.681948424068768	15	1-6,264-259;7-17,254-244	x-x,258-255[BULt];18-21,243-240[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CUCCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN1744_c6_g1_251_TPlot.pdf
TRINITY_DN17457_c0_g1:704	si_s581	TRINITY_DN17457_c0_g1	693	713	704	-22.40	-17.10	0.763392857142857	3	1-19,713-695	20-21,694-693[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UAUAUUUAUGAUUUUUUUAUU&AAUAAAAAAAUCAUGGAUAAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s581_TRINITY_DN17457_c0_g1_704_TPlot.pdf
TRINITY_DN17459_c0_g1:841	si_a543	TRINITY_DN17459_c0_g1	830	853	841	-28.70	-18.80	0.655052264808362	10.5	2-4,852-850;5-6,848-847;7-20,844-831	1-1,853-853[UP5];x-x,849-849[BULt];x-x,846-845[BULt];21-21,830-830[UP3]	.((((((((((((((..((.(((.&.)))-))--)))))))))))))).	UAAGGAGUGGAUUGAGGGCGCGAC&AUCG-GU--UCAAUCUAUUUCUUU	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN17459_c0_g1_841_TPlot.pdf
TRINITY_DN1745_c0_g1:70	si_s254	TRINITY_DN1745_c0_g1	59	79	70	-29.40	-20.80	0.707482993197279	5.5	1-15,79-65;17-19,63-61	16-16,64-64[SIL];20-21,60-59[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UAUGAAUAGUAUAUUGGGAGA&UUUCCCGAUAUAUUACUCAAA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN1745_c0_g1_70_TPlot.pdf
TRINITY_DN17467_c0_g1:393	si_s73	TRINITY_DN17467_c0_g1	380	402	393	-24.00	-17.20	0.716666666666667	7.5	2-16,401-387;17-21,384-380	1-1,402-402[UP5];x-x,386-385[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	AAAGGCAAGAGGAAGAGGAUAGU&UCUAUUUUUUUUCUUU--CCUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN17467_c0_g1_393_TPlot.pdf
TRINITY_DN17467_c0_g1:394	si_s72	TRINITY_DN17467_c0_g1	381	403	394	-24.10	-16.30	0.676348547717842	9	3-17,401-387;18-21,384-381	1-2,403-402[UP5];x-x,386-385[BULt]	((((..(((((((((((((((..&..)))))))))))))))--))))	AAGGCAAGAGGAAGAGGAUAGUC&UUCUAUUUUUUUUCUUU--CCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN17467_c0_g1_394_TPlot.pdf
TRINITY_DN17467_c0_g1:474	si_s896	TRINITY_DN17467_c0_g1	462	483	474	-31.60	-20.80	0.658227848101266	10	3-14,481-470;15-17,468-466;19-20,464-463	1-2,483-482[UP5];x-x,469-469[BULt];18-18,465-465[SIL];21-21,462-462[UP3]	.((.(((.((((((((((((..&..))))))))))))-))).)).	CGGUGUUAGAGGGGAAGGCCAA&UAGGCUUUCUCUUC-AAUUUCA	4	0.999998511189932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN17467_c0_g1_474_TPlot.pdf
TRINITY_DN17467_c0_g1:480	si_s890	TRINITY_DN17467_c0_g1	469	489	480	-29.50	-20.30	0.688135593220339	18	9-20,481-470	1-8,489-482[UP5];21-21,469-469[UP3]	.((((((((((((........&........)))))))))))).	AGAGGGGAAGGCCAAAUUAGG&AAUAAAUAGGCUUUCUCUUCA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN17467_c0_g1_480_TPlot.pdf
TRINITY_DN17467_c0_g1:481	si_s889	TRINITY_DN17467_c0_g1	470	490	481	-28.80	-19.80	0.6875	18.5	10-21,481-470	1-9,490-482[UP5]	((((((((((((.........&.........))))))))))))	GAGGGGAAGGCCAAAUUAGGG&AAAUAAAUAGGCUUUCUCUUC	2	0.978364371173897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN17467_c0_g1_481_TPlot.pdf
TRINITY_DN1746_c0_g1:4639	si_a166	TRINITY_DN1746_c0_g1	4628	4648	4639	-35.50	-24.20	0.68169014084507	10.5	5-18,4644-4631	1-4,4648-4645[UP5];19-21,4630-4628[UP3]	...((((((((((((((....&....))))))))))))))...	AGGAGGCGGGUGAAUAGCACC&CAAUCUAUUCACCCGUCUAGA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a166_TRINITY_DN1746_c0_g1_4639_TPlot.pdf
TRINITY_DN1746_c0_g1:6039	si_s807	TRINITY_DN1746_c0_g1	6028	6048	6039	-28.90	-19.20	0.664359861591695	9.5	1-6,6048-6043;8-18,6041-6031	7-7,6042-6042[SIL];19-21,6030-6028[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	GUCGAAAAGGUGAUUGAGGUG&UAUCUUCGUUACCUUUUCUUA	4	0.999999999873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1746_c0_g1_6039_TPlot.pdf
TRINITY_DN17473_c0_g1:594	si_s72	TRINITY_DN17473_c0_g1	583	603	594	-24.10	-16.28	0.67551867219917	10	1-4,603-600;8-20,596-584	5-7,599-597[SIL];21-21,583-583[UP3]	.(((((((((((((...((((&))))...))))))))))))).	CAGGAAAGAAGAGACUAAGGA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN17473_c0_g1_594_TPlot.pdf
TRINITY_DN17474_c0_g1:1513	si_s728	TRINITY_DN17474_c0_g1	1502	1522	1513	-31.90	-23.30	0.730407523510972	11.5	6-19,1517-1504	1-5,1522-1518[UP5];20-21,1503-1502[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGUCACCUGUCUAGAUUUUCC&AUAUUAUCUAGACGGGUGAAU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN17474_c0_g1_1513_TPlot.pdf
TRINITY_DN17474_c0_g1:1515	si_s726	TRINITY_DN17474_c0_g1	1504	1524	1515	-34.40	-23.10	0.671511627906977	13.5	8-21,1517-1504	1-7,1524-1518[UP5]	((((((((((((((.......&.......))))))))))))))	UCACCUGUCUAGAUUUUCCCC&AGAUAUUAUCUAGACGGGUGA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s726_TRINITY_DN17474_c0_g1_1515_TPlot.pdf
TRINITY_DN1748_c0_g1:429	si_s312	TRINITY_DN1748_c0_g1	418	440	429	-29.00	-19.50	0.672413793103448	14	5-7,436-434;8-20,431-419	1-4,440-437[UP5];x-x,433-432[BULt];21-21,418-418[UP3]	.(((((((((((((..(((....&....)))--))))))))))))).	CGACAAGAGGGACGCCGAAGAUG&AAAAUUC--UGUCCUUCUUGUUA	4	0.999999997672781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1748_c0_g1_429_TPlot.pdf
TRINITY_DN1748_c0_g1:484	si_a326	TRINITY_DN1748_c0_g1	473	493	484	-26.20	-17.30	0.66030534351145	11	2-4,492-490;6-10,488-484;13-21,481-473	1-1,493-493[UP5];5-5,489-489[SIL];11-12,483-482[SIL]	(((((((((..(((((.(((.&.))).)))))..)))))))))	GGCAGGGAACUGAGAGUUCAG&AUGAUUUUUUUAUUCCUUGUC	4	0.999999999949954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1748_c0_g1_484_TPlot.pdf
TRINITY_DN1748_c0_g1:665	si_a502	TRINITY_DN1748_c0_g1	654	673	665	-32.10	-22.40	0.697819314641745	6	1-6,673-668;8-10,667-665;12-20,663-655	7-7,x-x[BULq];11-11,664-664[SIL];21-21,654-654[UP3]	.(((((((((.(((-((((((&)))))).))).))))))))).	UUUCCAAGGAUGAC-AAAGAC&GUUUUUCGUCUUCCUUGGAAU	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1748_c0_g1_665_TPlot.pdf
TRINITY_DN1748_c0_g1:666	si_a501	TRINITY_DN1748_c0_g1	655	674	666	-33.50	-22.60	0.674626865671642	6	2-7,673-668;9-11,667-665;13-21,663-655	1-1,674-674[UP5];8-8,x-x[BULq];12-12,664-664[SIL]	(((((((((.(((-((((((.&.)))))).))).)))))))))	UUCCAAGGAUGAC-AAAGACC&CGUUUUUCGUCUUCCUUGGAA	3	0.999999988256462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN1748_c0_g1_666_TPlot.pdf
TRINITY_DN17490_c0_g5:252	si_s661	TRINITY_DN17490_c0_g5	241	261	252	-35.40	-23.90	0.675141242937853	8.5	1-3,261-259;5-17,257-245	4-4,258-258[SIL];18-21,244-241[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UAUACGAUUUGAUCCCUGGAU&AUCGGGGGAUCGAAUUGAUUA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN17490_c0_g5_252_TPlot.pdf
TRINITY_DN174_c0_g2:500	si_a67	TRINITY_DN174_c0_g2	489	511	500	-27.20	-19.30	0.709558823529412	7	1-6,511-506;7-12,503-498;14-21,496-489	x-x,505-504[BULt];13-13,497-497[SIL]	((((((((.((((((..((((((&))))))--)))))).))))))))	GGAGAACACUUUGGAGAAGAAGC&GCUUCU--UUCAAAUUGUUUUUC	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN174_c0_g2_500_TPlot.pdf
TRINITY_DN17506_c0_g1:289	si_s75	TRINITY_DN17506_c0_g1	276	298	289	-24.00	-15.80	0.658333333333333	7	3-13,296-286;15-21,282-276	1-2,298-297[UP5];14-14,285-283[AILt]	(((((((...(((((((((((..&..)))))))))))--.)))))))	AGAAAGGCCUAAGAAAAAGAAGA&UAUUUUUUUUCUU--UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN17506_c0_g1_289_TPlot.pdf
TRINITY_DN1750_c0_g1:1409	si_s899	TRINITY_DN1750_c0_g1	1398	1418	1409	-28.30	-20.18	0.713074204946996	7	1-12,1418-1407;16-18,1403-1401	13-15,1406-1404[SIL];19-21,1400-1398[UP3]	...(((...((((((((((((&))))))))))))...)))...	UGAUGAUGCUGAAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN1750_c0_g1_1409_TPlot.pdf
TRINITY_DN17513_c0_g1:910	si_s888	TRINITY_DN17513_c0_g1	899	919	910	-26.80	-18.18	0.678358208955224	9	1-6,919-914;10-21,910-899	7-9,913-911[SIL]	((((((((((((...((((((&))))))...))))))))))))	AAGGGAGAGUCUUAGUGUUUU&AAAAUAAAUAGGCUUUCUCUU	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN17513_c0_g1_910_TPlot.pdf
TRINITY_DN17516_c0_g1:165	si_a89	TRINITY_DN17516_c0_g1	154	175	165	-26.40	-17.20	0.651515151515151	7	1-7,175-169;10-21,165-154	8-9,168-166[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	UUUGUUGCCUUUAAAUUAAUAA&UUAUUAA-GAAAAGGUAACGAA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN17516_c0_g1_165_TPlot.pdf
TRINITY_DN17516_c0_g1:24	si_a180	TRINITY_DN17516_c0_g1	12	32	24	-32.10	-23.10	0.719626168224299	7	1-6,32-27;8-14,26-20;16-21,17-12	7-7,x-x[BULq];15-15,19-18[AILt]	((((((..(((((((-((((((&)))))).)))))))-.))))))	GGGGAGCUGAUGUUA-CUGGAC&GUCUAGAUAAUAUC-UUUCCCU	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN17516_c0_g1_24_TPlot.pdf
TRINITY_DN17516_c0_g1:25	si_a179	TRINITY_DN17516_c0_g1	13	33	25	-32.90	-22.10	0.671732522796353	7.5	2-7,32-27;9-15,26-20;17-21,17-13	1-1,33-33[UP5];8-8,x-x[BULq];16-16,19-18[AILt]	(((((..(((((((-((((((.&.)))))).)))))))-.)))))	GGGAGCUGAUGUUA-CUGGACA&CGUCUAGAUAAUAUC-UUUCCC	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN17516_c0_g1_25_TPlot.pdf
TRINITY_DN17528_c0_g1:183	si_a349	TRINITY_DN17528_c0_g1	172	192	183	-21.30	-14.20	0.666666666666667	7.5	1-16,192-177	17-21,176-172[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUAUCUAGAAUUGGUAUUUUU&GAAAAUAUUAAUUCUAUUUUG	2	0.97326627254944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN17528_c0_g1_183_TPlot.pdf
TRINITY_DN1752_c0_g1:1729	si_s642	TRINITY_DN1752_c0_g1	1717	1738	1729	-38.60	-26.60	0.689119170984456	9.5	3-15,1736-1724;16-19,1722-1719	1-2,1738-1737[UP5];x-x,1723-1723[BULt];20-21,1718-1717[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	GGUGUGCUCGGGGGCGGACGAU&GGCGUUUGCCCUCGA-UACAAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN1752_c0_g1_1729_TPlot.pdf
TRINITY_DN1752_c0_g1:1730	si_s641	TRINITY_DN1752_c0_g1	1718	1739	1730	-39.20	-26.60	0.678571428571429	10	4-16,1736-1724;17-20,1722-1719	1-3,1739-1737[UP5];x-x,1723-1723[BULt];21-21,1718-1718[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	GUGUGCUCGGGGGCGGACGAUG&AGGCGUUUGCCCUCGA-UACAA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN1752_c0_g1_1730_TPlot.pdf
TRINITY_DN1753_c0_g1:2082	si_s444	TRINITY_DN1753_c0_g1	2071	2091	2082	-22.80	-15.20	0.666666666666667	7	1-5,2091-2087;7-11,2085-2081;13-19,2079-2073	6-6,2086-2086[SIL];12-12,2080-2080[SIL];20-21,2072-2071[UP3]	..(((((((.(((((.(((((&))))).))))).)))))))..	UAUGUUGUUUUAUGUUAUAUG&CAUAUUAUAUAUAACAACAAU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN1753_c0_g1_2082_TPlot.pdf
TRINITY_DN1753_c0_g1:2083	si_s443	TRINITY_DN1753_c0_g1	2072	2092	2083	-23.50	-15.40	0.65531914893617	6	2-6,2091-2087;8-12,2085-2081;14-20,2079-2073	1-1,2092-2092[UP5];7-7,2086-2086[SIL];13-13,2080-2080[SIL];21-21,2072-2072[UP3]	.(((((((.(((((.(((((.&.))))).))))).))))))).	AUGUUGUUUUAUGUUAUAUGG&ACAUAUUAUAUAUAACAACAA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN1753_c0_g1_2083_TPlot.pdf
TRINITY_DN1754_c2_g1:39	si_a668	TRINITY_DN1754_c2_g1	28	49	39	-33.20	-22.40	0.674698795180723	9	1-3,49-47;4-8,45-41;11-20,38-29	x-x,46-46[BULt];9-10,40-39[SIL];21-21,28-28[UP3]	.((((((((((..(((((.(((&)))-)))))..)))))))))).	AUGAAUGAGGAUGCAGUACGGU&GCC-UAUUGAUUCCUUAUUCAC	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN1754_c2_g1_39_TPlot.pdf
TRINITY_DN1754_c2_g1:41	si_a666	TRINITY_DN1754_c2_g1	30	51	41	-31.60	-21.00	0.664556962025316	11.5	3-5,49-47;6-10,45-41;13-21,38-30	1-2,51-50[UP5];x-x,46-46[BULt];11-12,40-39[SIL]	(((((((((..(((((.(((..&..)))-)))))..)))))))))	GAAUGAGGAUGCAGUACGGUCU&AUGCC-UAUUGAUUCCUUAUUC	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN1754_c2_g1_41_TPlot.pdf
TRINITY_DN17551_c0_g1:112	si_s225	TRINITY_DN17551_c0_g1	99	121	112	-34.00	-22.14	0.651176470588235	11	2-11,120-111;16-20,104-100	1-1,121-121[UP5];12-15,110-105[AILt];21-21,99-99[UP3]	.(((((......((((((((((.&.))))))))))--....))))).	CAUUCCGCGACAUCACGCGGUUG&AAACCGCGUGA--AUAAGGAAUC	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s225_TRINITY_DN17551_c0_g1_112_TPlot.pdf
TRINITY_DN17551_c0_g1:113	si_s224	TRINITY_DN17551_c0_g1	100	122	113	-34.00	-22.14	0.651176470588235	11	3-12,120-111;17-21,104-100	1-2,122-121[UP5];13-16,110-105[AILt]	(((((......((((((((((..&..))))))))))--....)))))	AUUCCGCGACAUCACGCGGUUGA&GAAACCGCGUGA--AUAAGGAAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s224_TRINITY_DN17551_c0_g1_113_TPlot.pdf
TRINITY_DN17551_c0_g1:375	si_a173	TRINITY_DN17551_c0_g1	362	384	375	-33.80	-22.38	0.662130177514793	11.5	1-10,384-375;13-18,370-365	11-12,374-371[AILt];19-21,364-362[UP3]	...((((((....((((((((((&))))))))))--..))))))...	UGGGUUAUCCAGUGACGGGUGAA&UUCACCCGUC--UAGAUAAUAUC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN17551_c0_g1_375_TPlot.pdf
TRINITY_DN17551_c0_g1:3901	si_a576	TRINITY_DN17551_c0_g1	3890	3910	3901	-28.70	-21.00	0.731707317073171	9	4-19,3907-3892	1-3,3910-3908[UP5];20-21,3891-3890[UP3]	..((((((((((((((((...&...))))))))))))))))..	GACUUGUUACAAGCAUAUAAG&AUCGUAUGUUUGUAACAAGAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN17551_c0_g1_3901_TPlot.pdf
TRINITY_DN17551_c0_g1:440	si_s376	TRINITY_DN17551_c0_g1	428	450	440	-42.50	-28.60	0.672941176470588	8	2-8,449-443;9-15,441-435;16-17,433-432	1-1,450-450[UP5];x-x,442-442[BULt];x-x,434-434[BULt];18-21,431-428[UP3]	....((.(((((((.(((((((.&.)))))))-)))))))-))....	CGACGCGGGACACGACGAGCGAG&AUCGCUCG-CGUGUCC-GCCUUA	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN17551_c0_g1_440_TPlot.pdf
TRINITY_DN17551_c0_g1:472	si_a756	TRINITY_DN17551_c0_g1	460	481	472	-33.10	-21.60	0.652567975830816	12.5	3-10,479-472;12-12,470-470;13-20,468-461	1-2,481-480[UP5];11-11,471-471[SIL];x-x,469-469[BULt];21-21,460-460[UP3]	.((((((((.(.((((((((..&..)))))))).)-)))))))).	UUCGAGGACAUGGAGGGAGGGG&AACCUCCUUUGG-GUUUUUGAU	2	0.999999138489842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN17551_c0_g1_472_TPlot.pdf
TRINITY_DN17551_c0_g1:476	si_s84	TRINITY_DN17551_c0_g1	462	485	476	-32.30	-21.10	0.653250773993808	13	4-15,482-471;16-21,467-462	1-3,485-483[UP5];x-x,470-468[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	CGAGGACAUGGAGGGAGGGGACGU&UCUUUCCUUUCUUCU---UCUUCG	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN17551_c0_g1_476_TPlot.pdf
TRINITY_DN1755_c0_g1:1405	si_s61	TRINITY_DN1755_c0_g1	1394	1414	1405	-26.50	-17.50	0.660377358490566	8.5	3-8,1412-1407;10-15,1405-1400;17-21,1398-1394	1-2,1414-1413[UP5];9-9,1406-1406[SIL];16-16,1399-1399[SIL]	(((((.((((((.((((((..&..)))))).)))))).)))))	AGAAAAAGAGGUGGCUGACAU&AAGUUAGCAACUUCUAUUUUU	3	0.999975772617513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN1755_c0_g1_1405_TPlot.pdf
TRINITY_DN1755_c0_g1:1822	si_s104	TRINITY_DN1755_c0_g1	1811	1831	1822	-32.70	-22.00	0.672782874617737	11	1-12,1831-1820	13-21,1819-1811[UP3]	.........((((((((((((&)))))))))))).........	ACUUUUGGACCAGUCCGAGGC&GCUUCGGAUUGGAAAAUAGAA	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN1755_c0_g1_1822_TPlot.pdf
TRINITY_DN1755_c0_g1:1826	si_s100	TRINITY_DN1755_c0_g1	1815	1835	1826	-33.70	-22.40	0.664688427299703	13.5	5-16,1831-1820	1-4,1835-1832[UP5];17-21,1819-1815[UP3]	.....((((((((((((....&....)))))))))))).....	UUGGACCAGUCCGAGGCUUUA&CUUCGCUUCGGAUUGGAAAAU	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN1755_c0_g1_1826_TPlot.pdf
TRINITY_DN1755_c0_g1:2563	si_s39	TRINITY_DN1755_c0_g1	2552	2572	2563	-22.30	-15.88	0.712107623318386	5.5	2-12,2571-2561;16-21,2557-2552	1-1,2572-2572[UP5];13-15,2560-2558[SIL]	((((((...(((((((((((.&.)))))))))))...))))))	AGAUCCCAGUAUUGAAGAUUC&AAAUCUUUAAUAAUUGGAUUU	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1755_c0_g1_2563_TPlot.pdf
TRINITY_DN1755_c0_g1:2564	si_s38	TRINITY_DN1755_c0_g1	2553	2573	2564	-22.70	-15.18	0.668722466960352	7.5	3-13,2571-2561;17-21,2557-2553	1-2,2573-2572[UP5];14-16,2560-2558[SIL]	(((((...(((((((((((..&..)))))))))))...)))))	GAUCCCAGUAUUGAAGAUUCA&UAAAUCUUUAAUAAUUGGAUU	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN1755_c0_g1_2564_TPlot.pdf
TRINITY_DN1755_c1_g1:3143	si_a869	TRINITY_DN1755_c1_g1	3132	3152	3143	-24.80	-16.90	0.681451612903226	8.5	5-21,3148-3132	1-4,3152-3149[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUGCAAUUAAAUUUUUACAAA&UUAUUAAAGAUUUAGUUGCAA	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN1755_c1_g1_3143_TPlot.pdf
TRINITY_DN1755_c1_g1:5683	si_a887	TRINITY_DN1755_c1_g1	5672	5692	5683	-22.90	-17.80	0.777292576419214	9	4-19,5689-5674	1-3,5692-5690[UP5];20-21,5673-5672[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAUUGUUGCUAUGUUGAACA&CAAUCAAUAUAGUAAUAAUAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN1755_c1_g1_5683_TPlot.pdf
TRINITY_DN1755_c1_g1:5684	si_a886	TRINITY_DN1755_c1_g1	5673	5693	5684	-25.30	-17.80	0.703557312252964	10	5-20,5689-5674	1-4,5693-5690[UP5];21-21,5673-5673[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUUGUUGCUAUGUUGAACAA&GCAAUCAAUAUAGUAAUAAUA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a886_TRINITY_DN1755_c1_g1_5684_TPlot.pdf
TRINITY_DN1755_c1_g1:6067	si_a472	TRINITY_DN1755_c1_g1	6056	6076	6067	-21.50	-14.00	0.651162790697674	11	5-10,6072-6067;12-21,6065-6056	1-4,6076-6073[UP5];11-11,6066-6066[SIL]	((((((((((.((((((....&....)))))).))))))))))	UGUAUAGCAAAAAUUGCUAAA&AUAUGUAAUUAUUGUUAUAUA	2	0.999973919801513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1755_c1_g1_6067_TPlot.pdf
TRINITY_DN17566_c0_g1:3713	si_a46	TRINITY_DN17566_c0_g1	3702	3722	3713	-42.10	-28.10	0.667458432304038	6.5	1-5,3722-3718;7-9,3716-3714;11-17,3712-3706;19-21,3704-3702	6-6,3717-3717[SIL];10-10,3713-3713[SIL];18-18,3705-3705[SIL]	(((.(((((((.(((.(((((&))))).))).))))))).)))	GAGCCGACUCCAAGAGCUGCU&GGUAGGUCUAGGAGUCGACUC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN17566_c0_g1_3713_TPlot.pdf
TRINITY_DN17577_c0_g1:157	si_s16	TRINITY_DN17577_c0_g1	146	166	157	-25.60	-17.30	0.67578125	6.5	3-15,164-152;17-21,150-146	1-2,166-165[UP5];16-16,151-151[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UUGUGUUCGAUAUGGUAAUUC&UUAUUACUAUAUUGAUUGCAA	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN17577_c0_g1_157_TPlot.pdf
TRINITY_DN1757_c0_g1:14197	si_s92	TRINITY_DN1757_c0_g1	14186	14206	14197	-34.90	-24.20	0.693409742120344	6	1-11,14206-14196;14-19,14193-14188	12-13,14195-14194[SIL];20-21,14187-14186[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	AGCCGAAGAUAAGAAGAAGGA&UUCUUCUUCUUCGCUUCGGAU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1757_c0_g1_14197_TPlot.pdf
TRINITY_DN1757_c0_g1:16907	si_a295	TRINITY_DN1757_c0_g1	16896	16917	16907	-27.50	-20.30	0.738181818181818	11.5	1-7,16917-16911;12-21,16905-16896	8-11,16910-16906[AILt]	((((((((((.....(((((((&)))))))-....))))))))))	AAGCGAGUCUCUCGAUGAAUCC&GGAUUUA-AAAAAGAUUCGCUU	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN1757_c0_g1_16907_TPlot.pdf
TRINITY_DN1757_c0_g1:17042	si_a309	TRINITY_DN1757_c0_g1	17031	17050	17042	-33.60	-22.10	0.657738095238095	7.5	1-3,17050-17048;5-17,17047-17035	4-4,x-x[BULq];18-21,17034-17031[UP3]	....(((((((((((((-(((&))).)))))))))))))....	CUGAGGAUGAAUCCGAG-GAA&UUCGCUUGGAUUUAUCCAUGA	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN1757_c0_g1_17042_TPlot.pdf
TRINITY_DN1757_c0_g1:3994	si_a309	TRINITY_DN1757_c0_g1	3983	4003	3994	-33.60	-22.20	0.660714285714286	9	1-3,4003-4001;5-11,3999-3993;14-20,3990-3984	4-4,4000-4000[SIL];12-13,3992-3991[SIL];21-21,3983-3983[UP3]	.(((((((..(((((((.(((&))).)))))))..))))))).	GCAUGGAUCUGUCUAGGGGAA&UUCGCUUGGAUUUAUCCAUGA	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN1757_c0_g1_3994_TPlot.pdf
TRINITY_DN1757_c0_g1:5012	si_s84	TRINITY_DN1757_c0_g1	5001	5021	5012	-32.30	-21.50	0.665634674922601	8	1-11,5021-5011;13-18,5009-5004;20-20,5002-5002	12-12,5010-5010[SIL];19-19,5003-5003[SIL];21-21,5001-5001[UP3]	.(.((((((.(((((((((((&))))))))))).)))))).).	AGCGGGAGACGGGAGGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1757_c0_g1_5012_TPlot.pdf
TRINITY_DN1757_c0_g1:5013	si_s83	TRINITY_DN1757_c0_g1	5002	5022	5013	-30.90	-21.80	0.705501618122977	7.5	1-12,5022-5011;14-19,5009-5004	13-13,5010-5010[SIL];20-21,5003-5002[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GCGGGAGACGGGAGGGAAGAG&UUCUUUCCUUUCUUCUUCUUC	2	0.999999996612302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1757_c0_g1_5013_TPlot.pdf
TRINITY_DN1757_c0_g1:5014	si_s82	TRINITY_DN1757_c0_g1	5003	5023	5014	-28.90	-22.20	0.768166089965398	8	2-13,5022-5011;15-20,5009-5004	1-1,5023-5023[UP5];14-14,5010-5010[SIL];21-21,5003-5003[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CGGGAGACGGGAGGGAAGAGG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1757_c0_g1_5014_TPlot.pdf
TRINITY_DN1757_c0_g1:5016	si_s77	TRINITY_DN1757_c0_g1	5005	5025	5016	-25.50	-21.90	0.858823529411765	7	1-15,5025-5011;17-21,5009-5005	16-16,5010-5010[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GGAGACGGGAGGGAAGAGGAA&UUUUUUUUCUUUCCUUUCUUC	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1757_c0_g1_5016_TPlot.pdf
TRINITY_DN1757_c0_g1:5017	si_s76	TRINITY_DN1757_c0_g1	5006	5026	5017	-23.60	-19.60	0.830508474576271	8	2-16,5025-5011;18-21,5009-5006	1-1,5026-5026[UP5];17-17,5010-5010[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GAGACGGGAGGGAAGAGGAAC&AUUUUUUUUCUUUCCUUUCUU	2	0.995762828526261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1757_c0_g1_5017_TPlot.pdf
TRINITY_DN1757_c0_g1:5018	si_s75	TRINITY_DN1757_c0_g1	5007	5027	5018	-24.00	-18.30	0.7625	9	3-17,5025-5011;19-21,5009-5007	1-2,5027-5026[UP5];18-18,5010-5010[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	AGACGGGAGGGAAGAGGAACG&UAUUUUUUUUCUUUCCUUUCU	3	0.999999996443008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1757_c0_g1_5018_TPlot.pdf
TRINITY_DN1757_c0_g1:5019	si_s74	TRINITY_DN1757_c0_g1	5008	5028	5019	-25.00	-18.20	0.728	8.5	1-2,5028-5027;4-18,5025-5011;20-21,5009-5008	3-3,5026-5026[SIL];19-19,5010-5010[SIL]	((.(((((((((((((((.((&)).))))))))))))))).))	GACGGGAGGGAAGAGGAACGG&CUAUUUUUUUUCUUUCCUUUC	3	0.99999999802248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1757_c0_g1_5019_TPlot.pdf
TRINITY_DN1757_c0_g1:5020	si_s73	TRINITY_DN1757_c0_g1	5009	5029	5020	-24.00	-18.20	0.758333333333333	9.5	1-3,5029-5027;5-19,5025-5011	4-4,5026-5026[SIL];20-21,5010-5009[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	ACGGGAGGGAAGAGGAACGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999843271129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1757_c0_g1_5020_TPlot.pdf
TRINITY_DN1757_c0_g1:5021	si_s72	TRINITY_DN1757_c0_g1	5010	5030	5021	-24.10	-18.40	0.763485477178423	9.5	2-4,5029-5027;6-20,5025-5011	1-1,5030-5030[UP5];5-5,5026-5026[SIL];21-21,5010-5010[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	CGGGAGGGAAGAGGAACGGAU&UUCUAUUUUUUUUCUUUCCUU	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1757_c0_g1_5021_TPlot.pdf
TRINITY_DN1757_c0_g1:5023	si_s88	TRINITY_DN1757_c0_g1	5012	5035	5023	-34.80	-23.20	0.666666666666667	9.5	1-4,5035-5032;5-7,5029-5027;8-16,5025-5017;18-21,5015-5012	x-x,5031-5030[BULt];x-x,5026-5026[BULt];17-17,5016-5016[SIL]	((((.(((((((((.(((..((((&))))--)))-))))))))).))))	GGAGGGAAGAGGAACGGAUCAGGA&UCCU--UUC-UUCUUCUUCGCUUC	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1757_c0_g1_5023_TPlot.pdf
TRINITY_DN1757_c0_g1:5027	si_s85	TRINITY_DN1757_c0_g1	5015	5038	5027	-33.80	-22.10	0.653846153846154	9.5	1-7,5038-5032;8-10,5029-5027;11-19,5025-5017;21-21,5015-5015	x-x,5031-5030[BULt];x-x,5026-5026[BULt];20-20,5016-5016[SIL]	(.(((((((((.(((..(((((((&)))))))--)))-))))))))).)	GGGAAGAGGAACGGAUCAGGAAGG&CUUUCCU--UUC-UUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1757_c0_g1_5027_TPlot.pdf
TRINITY_DN1757_c0_g1:5061	si_s95	TRINITY_DN1757_c0_g1	5050	5070	5061	-36.30	-23.70	0.652892561983471	9	2-15,5069-5056	1-1,5070-5070[UP5];16-21,5055-5050[UP3]	......((((((((((((((.&.))))))))))))))......	AUACGGCGAGGCGAAGAGGAC&UUCUUCUUCGCUUCGGAUUGG	2	0.999854708090646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN1757_c0_g1_5061_TPlot.pdf
TRINITY_DN1757_c0_g1:5062	si_s94	TRINITY_DN1757_c0_g1	5051	5072	5062	-35.50	-23.80	0.670422535211268	9.5	1-2,5072-5071;3-16,5069-5056	x-x,5070-5070[BULt];17-21,5055-5051[UP3]	.....((((((((((((((.((&))-)))))))))))))).....	UACGGCGAGGCGAAGAGGACGG&CU-UCUUCUUCGCUUCGGAUUG	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN1757_c0_g1_5062_TPlot.pdf
TRINITY_DN1757_c0_g1:5063	si_s93	TRINITY_DN1757_c0_g1	5052	5074	5063	-34.80	-24.50	0.704022988505747	10.5	1-3,5074-5072;4-17,5069-5056	x-x,5071-5070[BULt];18-21,5055-5052[UP3]	....((((((((((((((..(((&)))--))))))))))))))....	ACGGCGAGGCGAAGAGGACGGGA&UCU--UCUUCUUCGCUUCGGAUU	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1757_c0_g1_5063_TPlot.pdf
TRINITY_DN1757_c0_g1:5064	si_s92	TRINITY_DN1757_c0_g1	5053	5074	5064	-34.90	-25.50	0.730659025787966	8.5	1-4,5074-5071;5-18,5069-5056	x-x,5070-5070[BULt];19-21,5055-5053[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	CGGCGAGGCGAAGAGGACGGGA&UUCU-UCUUCUUCGCUUCGGAU	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN1757_c0_g1_5064_TPlot.pdf
TRINITY_DN1757_c0_g1:5066	si_s90	TRINITY_DN1757_c0_g1	5055	5075	5066	-35.30	-28.80	0.81586402266289	6.5	1-5,5075-5071;7-20,5069-5056	6-6,5070-5070[SIL];21-21,5055-5055[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	GCGAGGCGAAGAGGACGGGAG&CUUUCUUCUUCUUCGCUUCGG	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1757_c0_g1_5066_TPlot.pdf
TRINITY_DN1757_c0_g1:5068	si_s88	TRINITY_DN1757_c0_g1	5057	5077	5068	-34.80	-26.50	0.761494252873563	8.5	3-7,5075-5071;9-21,5069-5057	1-2,5077-5076[UP5];8-8,5070-5070[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGGCGAAGAGGACGGGAGAC&UCCUUUCUUCUUCUUCGCUUC	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1757_c0_g1_5068_TPlot.pdf
TRINITY_DN1757_c0_g1:5338	si_s797	TRINITY_DN1757_c0_g1	5327	5349	5338	-30.00	-20.20	0.673333333333333	13	2-6,5348-5344;8-20,5340-5328	1-1,5349-5349[UP5];7-7,5343-5341[AILt];21-21,5327-5327[UP3]	.(((((((((((((...(((((.&.)))))--.))))))))))))).	AGACGGAGAUGGAGAAAGCGAGA&GCUCGU--AUUUUAUCUUCGUUA	4	0.999997234426688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN1757_c0_g1_5338_TPlot.pdf
TRINITY_DN1757_c0_g1:5339	si_s86	TRINITY_DN1757_c0_g1	5327	5349	5339	-32.90	-22.00	0.668693009118541	6.5	1-4,5349-5346;5-12,5344-5337;14-19,5335-5330;20-21,5328-5327	x-x,5345-5345[BULt];13-13,5336-5336[SIL];x-x,5329-5329[BULt]	((.((((((.((((((((.((((&))))-)))))))).))))))-))	AGACGGAGAUGGAGAAAGCGAGA&UUUC-CUUUCUUCUUCUUCG-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1757_c0_g1_5339_TPlot.pdf
TRINITY_DN1757_c0_g1:5341	si_s84	TRINITY_DN1757_c0_g1	5330	5351	5341	-32.30	-21.40	0.662538699690402	8	3-6,5349-5346;7-14,5344-5337;16-21,5335-5330	1-2,5351-5350[UP5];x-x,5345-5345[BULt];15-15,5336-5336[SIL]	((((((.((((((((.((((..&..))))-)))))))).))))))	CGGAGAUGGAGAAAGCGAGAAU&UCUUUC-CUUUCUUCUUCUUCG	2	0.999999999999837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1757_c0_g1_5341_TPlot.pdf
TRINITY_DN1757_c0_g1:5363	si_s899	TRINITY_DN1757_c0_g1	5351	5372	5363	-28.30	-19.72	0.696819787985866	10	1-12,5372-5361;16-17,5356-5355	13-15,5360-5357[AILt];18-21,5354-5351[UP3]	....((....((((((((((((&))))))))))))-...))....	UCAAGAUAUGUGAAGAGGAAGC&GCUUUCUCUUCA-AUUUCAAUU	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN1757_c0_g1_5363_TPlot.pdf
TRINITY_DN1757_c0_g1:5368	si_s894	TRINITY_DN1757_c0_g1	5357	5377	5368	-29.10	-19.00	0.652920962199313	14	6-17,5372-5361	1-5,5377-5373[UP5];18-21,5360-5357[UP3]	....((((((((((((.....&.....))))))))))))....	UAUGUGAAGAGGAAGCGGCUG&AAUAGGCUUUCUCUUCAAUUU	3	0.999999999908848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN1757_c0_g1_5368_TPlot.pdf
TRINITY_DN1757_c0_g1:5369	si_s893	TRINITY_DN1757_c0_g1	5358	5378	5369	-29.10	-19.00	0.652920962199313	15	7-18,5372-5361	1-6,5378-5373[UP5];19-21,5360-5358[UP3]	...((((((((((((......&......))))))))))))...	AUGUGAAGAGGAAGCGGCUGA&AAAUAGGCUUUCUCUUCAAUU	4	0.99999999964434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN1757_c0_g1_5369_TPlot.pdf
TRINITY_DN1757_c0_g1:5535	si_a633	TRINITY_DN1757_c0_g1	5524	5545	5535	-26.40	-19.90	0.753787878787879	7.5	1-4,5545-5542;6-9,5540-5537;10-20,5535-5525	5-5,5541-5541[SIL];x-x,5536-5536[BULt];21-21,5524-5524[UP3]	.(((((((((((.((((.((((&)))).))))-))))))))))).	AACUCAAAGAAAUUCGAGGUGA&UUAUGUCGA-UUUUUUUGAGUA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN1757_c0_g1_5535_TPlot.pdf
TRINITY_DN1757_c0_g1:5537	si_a632	TRINITY_DN1757_c0_g1	5525	5546	5537	-26.10	-19.60	0.75095785440613	7.5	2-5,5545-5542;7-10,5540-5537;11-21,5535-5525	1-1,5546-5546[UP5];6-6,5541-5541[SIL];x-x,5536-5536[BULt]	(((((((((((.((((.((((.&.)))).))))-)))))))))))	ACUCAAAGAAAUUCGAGGUGAA&AUUAUGUCGA-UUUUUUUGAGU	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN1757_c0_g1_5537_TPlot.pdf
TRINITY_DN1757_c0_g1:7117	si_s97	TRINITY_DN1757_c0_g1	7106	7131	7117	-36.30	-23.90	0.658402203856749	15	1-9,7131-7123;10-19,7117-7108	x-x,7122-7118[BULt];20-21,7107-7106[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	AGCUGAUCCGGACGAAUGUGAAGAAG&CUUCUUCGC-----UUCGGAUUGGAA	2	0.997863096634582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN1757_c0_g1_7117_TPlot.pdf
TRINITY_DN1757_c0_g1:7180	si_s522	TRINITY_DN1757_c0_g1	7169	7190	7180	-23.80	-15.60	0.65546218487395	10.5	1-4,7190-7187;7-11,7183-7179;13-21,7177-7169	5-6,7186-7184[AILt];12-12,7178-7178[SIL]	(((((((((.(((((...((((&))))-..))))).)))))))))	GAAGGUGAUGUCGAAGGCGAGA&UCUU-AAUUCGAAAUCAUUUUU	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN1757_c0_g1_7180_TPlot.pdf
TRINITY_DN1757_c0_g1:7253	si_s739	TRINITY_DN1757_c0_g1	7242	7262	7253	-35.60	-24.00	0.674157303370786	7	1-9,7262-7254;11-18,7252-7245	10-10,7253-7253[SIL];19-21,7244-7242[UP3]	...((((((((.(((((((((&))))))))).))))))))...	CGCGUCGGUUUCUUCACCCGU&ACGGGUGAAUAGAUUGACCUU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN1757_c0_g1_7253_TPlot.pdf
TRINITY_DN1757_c0_g1:7369	si_a504	TRINITY_DN1757_c0_g1	7358	7378	7369	-32.90	-21.50	0.653495440729483	13	5-16,7374-7363	1-4,7378-7375[UP5];17-21,7362-7358[UP3]	.....((((((((((((....&....)))))))))))).....	CAAGGCCAAGGAGGACGCCAA&UUUUCGUCUUCCUUGGAAUGU	2	0.999975796446657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN1757_c0_g1_7369_TPlot.pdf
TRINITY_DN1757_c0_g1:7370	si_a503	TRINITY_DN1757_c0_g1	7359	7379	7370	-32.10	-21.50	0.669781931464174	14	6-17,7374-7363	1-5,7379-7375[UP5];18-21,7362-7359[UP3]	....((((((((((((.....&.....))))))))))))....	AAGGCCAAGGAGGACGCCAAG&UUUUUCGUCUUCCUUGGAAUG	3	0.999999532366031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN1757_c0_g1_7370_TPlot.pdf
TRINITY_DN1757_c0_g1:7371	si_a502	TRINITY_DN1757_c0_g1	7360	7380	7371	-32.10	-24.10	0.750778816199377	9	1-4,7380-7377;7-18,7374-7363	5-6,7376-7375[SIL];19-21,7362-7360[UP3]	...((((((((((((..((((&))))..))))))))))))...	AGGCCAAGGAGGACGCCAAGC&GUUUUUCGUCUUCCUUGGAAU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN1757_c0_g1_7371_TPlot.pdf
TRINITY_DN1757_c0_g1:7373	si_a500	TRINITY_DN1757_c0_g1	7362	7382	7373	-34.40	-24.50	0.712209302325581	9.5	3-6,7380-7377;9-20,7374-7363	1-2,7382-7381[UP5];7-8,7376-7375[SIL];21-21,7362-7362[UP3]	.((((((((((((..((((..&..))))..)))))))))))).	GCCAAGGAGGACGCCAAGCUG&UCGUUUUUCGUCUUCCUUGGA	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1757_c0_g1_7373_TPlot.pdf
TRINITY_DN1757_c0_g1:7374	si_a499	TRINITY_DN1757_c0_g1	7363	7384	7374	-35.20	-26.30	0.747159090909091	8.5	1-3,7384-7382;4-7,7380-7377;10-21,7374-7363	x-x,7381-7381[BULt];8-9,7376-7375[SIL]	((((((((((((..((((.(((&)))-))))..))))))))))))	CCAAGGAGGACGCCAAGCUGGC&GUC-GUUUUUCGUCUUCCUUGG	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1757_c0_g1_7374_TPlot.pdf
TRINITY_DN1757_c0_g1:7375	si_a498	TRINITY_DN1757_c0_g1	7364	7385	7375	-33.50	-22.60	0.674626865671642	9.5	2-4,7384-7382;5-8,7380-7377;11-21,7374-7364	1-1,7385-7385[UP5];x-x,7381-7381[BULt];9-10,7376-7375[SIL]	(((((((((((..((((.(((.&.)))-))))..)))))))))))	CAAGGAGGACGCCAAGCUGGCC&UGUC-GUUUUUCGUCUUCCUUG	4	0.999999999816279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1757_c0_g1_7375_TPlot.pdf
TRINITY_DN1757_c0_g1:7396	si_s808	TRINITY_DN1757_c0_g1	7385	7406	7396	-28.60	-18.60	0.65034965034965	9.5	2-6,7405-7401;7-9,7399-7397;11-19,7395-7387	1-1,7406-7406[UP5];x-x,7400-7400[BULt];10-10,7396-7396[SIL];20-21,7386-7385[UP3]	..(((((((((.(((.(((((.&.)))))-))).)))))))))..	CAGAGAAAAGGCAGCAGAGGAA&AUCUUC-GUUACCUUUUCUUAA	2	0.999999989870908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1757_c0_g1_7396_TPlot.pdf
TRINITY_DN1757_c0_g1:7409	si_a142	TRINITY_DN1757_c0_g1	7398	7418	7409	-23.50	-16.30	0.693617021276596	10	3-14,7416-7405;16-19,7403-7400	1-2,7418-7417[UP5];15-15,7404-7404[SIL];20-21,7399-7398[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	GCAGAGGAACGGCGAUUGAAG&AAUUAAUCGUUGUUGUUUUAA	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1757_c0_g1_7409_TPlot.pdf
TRINITY_DN1757_c0_g1:7410	si_a141	TRINITY_DN1757_c0_g1	7399	7419	7410	-23.80	-16.30	0.684873949579832	11	4-15,7416-7405;17-20,7403-7400	1-3,7419-7417[UP5];16-16,7404-7404[SIL];21-21,7399-7399[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	CAGAGGAACGGCGAUUGAAGA&UAAUUAAUCGUUGUUGUUUUA	2	0.999957093544132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1757_c0_g1_7410_TPlot.pdf
TRINITY_DN17588_c0_g1:417	si_a65	TRINITY_DN17588_c0_g1	408	426	417	-27.70	-18.50	0.667870036101083	8	1-10,426-417;13-20,416-409	11-12,x-x[BULq];21-21,408-408[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	UGGACAAUU--AGAGAGGCGA&UCGCUUCUUUCAAAUUGUUUU	4	0.999999967315661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN17588_c0_g1_417_TPlot.pdf
TRINITY_DN1758_c0_g1:2188	si_s429	TRINITY_DN1758_c0_g1	2178	2197	2188	-21.10	-15.70	0.744075829383886	5.5	1-10,2197-2188;13-21,2186-2178	11-12,2187-2187[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	AAUAUGUGAA-AUUGUUGUAU&AUAUAACAAUAAUUACAUAUU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN1758_c0_g1_2188_TPlot.pdf
TRINITY_DN1758_c0_g1:2189	si_s428	TRINITY_DN1758_c0_g1	2179	2198	2189	-21.50	-15.90	0.73953488372093	4.5	1-11,2198-2188;14-21,2186-2179	12-13,2187-2187[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	AUAUGUGAA-AUUGUUGUAUA&UAUAUAACAAUAAUUACAUAU	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN1758_c0_g1_2189_TPlot.pdf
TRINITY_DN17591_c0_g1:323	si_a567	TRINITY_DN17591_c0_g1	307	335	323	-36.40	-23.70	0.651098901098901	12.5	2-7,334-329;8-13,325-320;14-21,314-307	1-1,335-335[UP5];x-x,328-326[BULt];x-x,319-315[BULt]	((((((((.....((((((...((((((.&.))))))---))))))-----))))))))	CAGACAUAUCCGCCGAUUCCCAACGGGGC&UCCCCGU---GAAUCG-----UAUGUUUG	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a567_TRINITY_DN17591_c0_g1_323_TPlot.pdf
TRINITY_DN17591_c0_g1:582	si_a677	TRINITY_DN17591_c0_g1	569	591	582	-35.40	-23.96	0.67683615819209	11	1-10,591-582;14-21,576-569	11-13,581-577[AILt]	((((((((.....((((((((((&))))))))))--...))))))))	CGAGACCGGACCCGAAUGAGGAG&UUCCUUAUUC--ACGCGGUUUCG	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN17591_c0_g1_582_TPlot.pdf
TRINITY_DN1759_c0_g1:1209	si_a393	TRINITY_DN1759_c0_g1	1198	1218	1209	-22.70	-14.80	0.651982378854626	6.5	2-8,1217-1211;10-20,1209-1199	1-1,1218-1218[UP5];9-9,1210-1210[SIL];21-21,1198-1198[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	CAGAUGAUUCUGAAUUCUUAC&UUAAGAAUAUAGAAUUGUUUU	3	0.999823841900373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN1759_c0_g1_1209_TPlot.pdf
TRINITY_DN175_c0_g1:5089	si_a474	TRINITY_DN175_c0_g1	5078	5098	5089	-23.60	-18.00	0.76271186440678	6	2-2,5097-5097;4-20,5095-5079	1-1,5098-5098[UP5];3-3,5096-5096[SIL];21-21,5078-5078[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	ACUAUAUGGCGAUAAUUAGAC&AUGUAAUUAUUGUUAUAUAGA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN175_c0_g1_5089_TPlot.pdf
TRINITY_DN17603_c0_g1:319	si_s276	TRINITY_DN17603_c0_g1	308	328	319	-32.30	-21.20	0.656346749226006	7.5	1-6,328-323;9-19,320-310	7-8,322-321[SIL];20-21,309-308[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	UGGGGCGUAUUAUACCGGUUU&AAAUCGACAUAAUACGCCUAG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s276_TRINITY_DN17603_c0_g1_319_TPlot.pdf
TRINITY_DN17605_c1_g1:197	si_a836	TRINITY_DN17605_c1_g1	186	206	197	-24.10	-16.20	0.672199170124481	10	4-17,203-190	1-3,206-204[UP5];18-21,189-186[UP3]	....((((((((((((((...&...))))))))))))))....	CAAACAACUUCUGUUUUUAAA&AAAAAAAAUAGAAGUUGCUAA	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN17605_c1_g1_197_TPlot.pdf
TRINITY_DN17607_c0_g1:501	si_a788	TRINITY_DN17607_c0_g1	489	510	501	-24.80	-17.00	0.685483870967742	7.5	3-16,508-495;17-19,493-491	1-2,510-509[UP5];x-x,494-494[BULt];20-21,490-489[UP3]	..(((.((((((((((((((..&..))))))))))))))-)))..	UGGGGUAAAUAGAGAAAUAGCA&UUCUAUUUUUCUAUUU-UCCAA	4	0.999999996258643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN17607_c0_g1_501_TPlot.pdf
TRINITY_DN17607_c0_g1:738	si_a405	TRINITY_DN17607_c0_g1	727	748	738	-19.80	-14.10	0.712121212121212	7	2-5,747-744;6-20,742-728	1-1,748-748[UP5];x-x,743-743[BULt];21-21,727-727[UP3]	.(((((((((((((((.((((.&.))))-))))))))))))))).	GUAAAUAUAAAUAAAGCCAGUG&AAUUG-UUUUGUUUAUAUUUAA	4	0.999999999679218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN17607_c0_g1_738_TPlot.pdf
TRINITY_DN1760_c0_g1:3594	si_s894	TRINITY_DN1760_c0_g1	3583	3604	3594	-29.10	-19.30	0.663230240549828	12.5	5-9,3600-3596;11-20,3593-3584	1-4,3604-3601[UP5];10-10,3595-3594[AILt];21-21,3583-3583[UP3]	.((((((((((..(((((....&....)))))-.)))))))))).	CAAUUGGAGAGCUAAGCCGAAG&AAUAGGCUU-UCUCUUCAAUUU	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN1760_c0_g1_3594_TPlot.pdf
TRINITY_DN17610_c0_g2:725	si_a770	TRINITY_DN17610_c0_g2	714	737	725	-28.70	-18.80	0.655052264808362	16	2-7,736-731;11-21,724-714	1-1,737-737[UP5];8-10,730-725[AILt]	(((((((((((......((((((.&.))))))---...)))))))))))	GAAGAGUUGAAGAUAUUGUCGGAG&UUUUGAU---UGAUUCAACUCUUC	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN17610_c0_g2_725_TPlot.pdf
TRINITY_DN17614_c1_g1:85	si_a477	TRINITY_DN17614_c1_g1	74	94	85	-21.50	-14.70	0.683720930232558	8	3-17,92-78	1-2,94-93[UP5];18-21,77-74[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGCCCUAUAUAAUAAUAAUAA&UAAUUAUUGUUAUAUAGAAUA	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN17614_c1_g1_85_TPlot.pdf
TRINITY_DN17615_c0_g1:422	si_s350	TRINITY_DN17615_c0_g1	411	432	422	-30.90	-20.30	0.656957928802589	8.5	1-7,432-426;9-20,423-412	8-8,425-424[AILt];21-21,411-411[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	UGGUUUAUUUCUUCGGUUUCCC&GGGAGAU-AAAGAAAUAGAUUG	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s350_TRINITY_DN17615_c0_g1_422_TPlot.pdf
TRINITY_DN17618_c0_g2:1108	si_a319	TRINITY_DN17618_c0_g2	1097	1117	1108	-22.40	-14.70	0.65625	12.5	5-16,1113-1102	1-4,1117-1114[UP5];17-21,1101-1097[UP3]	.....((((((((((((....&....)))))))))))).....	GCAAUGAAAAUCAUGGAAGUG&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN17618_c0_g2_1108_TPlot.pdf
TRINITY_DN17618_c1_g1:205	si_a77	TRINITY_DN17618_c1_g1	194	216	205	-22.20	-17.50	0.788288288288288	7.5	2-9,215-208;10-21,205-194	1-1,216-216[UP5];x-x,207-206[BULt]	((((((((((((..((((((((.&.))))))))--))))))))))))	UCUUAAUAGUGGCAAAGACAAUA&AAUUGUUUU--UCAUUAUUAAGA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN17618_c1_g1_205_TPlot.pdf
TRINITY_DN17618_c1_g1:208	si_a76	TRINITY_DN17618_c1_g1	195	217	208	-21.20	-15.40	0.726415094339623	9.5	3-10,215-208;11-21,205-195	1-2,217-216[UP5];x-x,207-206[BULt]	(((((((((((..((((((((..&..))))))))--)))))))))))	CUUAAUAGUGGCAAAGACAAUAA&AAAUUGUUUU--UCAUUAUUAAG	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN17618_c1_g1_208_TPlot.pdf
TRINITY_DN17622_c0_g1:127	si_a627	TRINITY_DN17622_c0_g1	116	136	127	-29.50	-19.60	0.664406779661017	4.5	1-6,136-131;8-12,129-125;14-21,123-116	7-7,130-130[SIL];13-13,124-124[SIL]	((((((((.(((((.((((((&)))))).))))).))))))))	GAAAAAUCAACAUAUUACGUC&GGCGUAUUAUGUCGAUUUUUU	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN17622_c0_g1_127_TPlot.pdf
TRINITY_DN1762_c0_g1:1137	si_a86	TRINITY_DN1762_c0_g1	1126	1146	1137	-26.60	-17.40	0.654135338345865	5	2-16,1145-1131;18-18,1129-1129	1-1,1146-1146[UP5];17-17,1130-1130[SIL];19-21,1128-1126[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	GAAAGCUUUUCUUAAUAAUGU&UCAUUAUUAAGAAAAGGUAAC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN1762_c0_g1_1137_TPlot.pdf
TRINITY_DN1762_c0_g1:1139	si_a84	TRINITY_DN1762_c0_g1	1128	1148	1139	-24.90	-17.40	0.698795180722892	7	4-18,1145-1131;20-20,1129-1129	1-3,1148-1146[UP5];19-19,1130-1130[SIL];21-21,1128-1128[UP3]	.(.(((((((((((((((...&...))))))))))))))).).	AAGCUUUUCUUAAUAAUGUCG&UUUCAUUAUUAAGAAAAGGUA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN1762_c0_g1_1139_TPlot.pdf
TRINITY_DN17631_c0_g1:131	si_s472	TRINITY_DN17631_c0_g1	120	140	131	-31.80	-23.10	0.726415094339623	9.5	1-5,140-136;8-17,133-124	6-7,135-134[SIL];18-21,123-120[UP3]	....((((((((((..(((((&)))))..))))))))))....	UCCAAUGGGAUCCGAGGGGUA&UAUCCAACGGAUCCUAUAUUU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s472_TRINITY_DN17631_c0_g1_131_TPlot.pdf
TRINITY_DN17634_c1_g1:156	si_a379	TRINITY_DN17634_c1_g1	145	165	156	-23.90	-17.80	0.744769874476988	4.5	2-19,164-147	1-1,165-165[UP5];20-21,146-145[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AGUUUAAUUCGAAAUUAUUUG&AAAAUGAUUUCGAAUUAAGAA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a379_TRINITY_DN17634_c1_g1_156_TPlot.pdf
TRINITY_DN17634_c1_g1:157	si_a378	TRINITY_DN17634_c1_g1	146	166	157	-23.80	-17.80	0.747899159663866	5.5	3-20,164-147	1-2,166-165[UP5];21-21,146-146[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUUUAAUUCGAAAUUAUUUGA&AAAAAUGAUUUCGAAUUAAGA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a378_TRINITY_DN17634_c1_g1_157_TPlot.pdf
TRINITY_DN17637_c0_g1:3818	si_a539	TRINITY_DN17637_c0_g1	3807	3827	3818	-32.70	-21.30	0.651376146788991	9	3-13,3825-3815;15-18,3813-3810	1-2,3827-3826[UP5];14-14,3814-3814[SIL];19-21,3809-3807[UP3]	...((((.(((((((((((..&..))))))))))).))))...	CGUUGGGCUGAACCGGUCGGG&AGCGAUCGGUUCAAUCUAUUU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN17637_c0_g1_3818_TPlot.pdf
TRINITY_DN17637_c0_g1:3989	si_s526	TRINITY_DN17637_c0_g1	3978	3998	3989	-25.60	-17.20	0.671875	6	1-6,3998-3993;8-18,3991-3981	7-7,3992-3992[SIL];19-21,3980-3978[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UCGCAGAGAUGAUUGCGAAUU&AAUUCGAAAUCAUUUUUGAUC	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN17637_c0_g1_3989_TPlot.pdf
TRINITY_DN17637_c0_g1:3991	si_s524	TRINITY_DN17637_c0_g1	3980	4000	3991	-23.90	-17.20	0.719665271966527	7	3-8,3998-3993;10-20,3991-3981	1-2,4000-3999[UP5];9-9,3992-3992[SIL];21-21,3980-3980[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	GCAGAGAUGAUUGCGAAUUCC&UUAAUUCGAAAUCAUUUUUGA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN17637_c0_g1_3991_TPlot.pdf
TRINITY_DN17637_c0_g1:3992	si_s523	TRINITY_DN17637_c0_g1	3981	4001	3992	-24.50	-17.00	0.693877551020408	8	4-9,3998-3993;11-21,3991-3981	1-3,4001-3999[UP5];10-10,3992-3992[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	CAGAGAUGAUUGCGAAUUCCA&CUUAAUUCGAAAUCAUUUUUG	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN17637_c0_g1_3992_TPlot.pdf
TRINITY_DN17637_c0_g1:4060	si_a758	TRINITY_DN17637_c0_g1	4048	4069	4060	-34.00	-22.58	0.664117647058823	11	1-11,4069-4059;17-21,4052-4048	12-16,4058-4053[AILt]	(((((......(((((((((((&)))))))))))-.....)))))	CGGUCCGAUCUUCCAGAGGAGG&CCUCCUUUGGG-UUUUUGAUUG	3	0.999999610255606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN17637_c0_g1_4060_TPlot.pdf
TRINITY_DN17637_c0_g1:4627	si_s299	TRINITY_DN17637_c0_g1	4615	4636	4627	-30.00	-19.80	0.66	9	1-11,4636-4626;12-15,4624-4621	x-x,4625-4625[BULt];16-21,4620-4615[UP3]	......((((.(((((((((((&)))))))))))-))))......	GCUUCGUUCGUCAAUUCCGAUC&GAUUGGAAUUG-CGAAAAUUCU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s299_TRINITY_DN17637_c0_g1_4627_TPlot.pdf
TRINITY_DN17641_c0_g1:156	si_s692	TRINITY_DN17641_c0_g1	145	165	156	-24.20	-16.46	0.680165289256198	11	2-5,164-161;10-21,156-145	1-1,165-165[UP5];6-9,160-157[SIL]	((((((((((((....((((.&.))))....))))))))))))	AGUGAAUCGACUUAAAGAACA&AGUUUAAUUAGUCGAUUUAUU	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN17641_c0_g1_156_TPlot.pdf
TRINITY_DN17645_c0_g2:871	si_a887	TRINITY_DN17645_c0_g2	858	881	871	-22.90	-15.60	0.681222707423581	5	1-6,881-876;7-14,874-867;15-21,864-858	x-x,875-875[BULt];x-x,866-865[BULt]	(((((((..((((((((.((((((&))))))-))))))))--)))))))	UUAUUAUUUUACUGUAUAUGAUUG&CAAUCA-AUAUAGUA--AUAAUAA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN17645_c0_g2_871_TPlot.pdf
TRINITY_DN17651_c0_g1:286	si_s45	TRINITY_DN17651_c0_g1	275	295	286	-24.70	-17.00	0.688259109311741	16.5	9-20,287-276	1-8,295-288[UP5];21-21,275-275[UP3]	.((((((((((((........&........)))))))))))).	CACUUGAGAUCCAGAGCUCAC&UUAAUAAUUGGAUUUCAAGUU	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN17651_c0_g1_286_TPlot.pdf
TRINITY_DN17651_c0_g1:369	si_a350	TRINITY_DN17651_c0_g1	358	378	369	-20.30	-14.10	0.694581280788177	11	4-19,375-360	1-3,378-376[UP5];20-21,359-358[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAGAGAUAGGGUUAAUGUAAG&AAAAUAUUAAUUCUAUUUUGA	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN17651_c0_g1_369_TPlot.pdf
TRINITY_DN17651_c0_g1:805	si_s73	TRINITY_DN17651_c0_g1	794	814	805	-24.00	-15.80	0.658333333333333	8.5	2-8,813-807;10-18,805-797	1-1,814-814[UP5];9-9,806-806[SIL];19-21,796-794[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	ACCGGGAAGGAACAAAAUGGU&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN17651_c0_g1_805_TPlot.pdf
TRINITY_DN17651_c0_g2:714	si_a407	TRINITY_DN17651_c0_g2	703	725	714	-19.80	-14.00	0.707070707070707	10	1-9,725-717;10-18,714-706	x-x,716-715[BULt];19-21,705-703[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	GAGUGAAUGUAAUAGCAGAACAA&UUGUUUUGU--UUAUAUUUAAAU	3	0.99999997516321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN17651_c0_g2_714_TPlot.pdf
TRINITY_DN17651_c0_g2:788	si_a407	TRINITY_DN17651_c0_g2	777	799	788	-19.80	-14.00	0.707070707070707	10	1-9,799-791;10-18,788-780	x-x,790-789[BULt];19-21,779-777[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	GAGUGAAUGUAAUAGCAGAACAA&UUGUUUUGU--UUAUAUUUAAAU	2	0.999987640717283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN17651_c0_g2_788_TPlot.pdf
TRINITY_DN1765_c0_g1:1291	si_a753	TRINITY_DN1765_c0_g1	1277	1300	1291	-33.10	-21.80	0.658610271903323	10.5	3-14,1298-1287;15-19,1283-1279	1-2,1300-1299[UP5];x-x,1286-1284[BULt];20-21,1278-1277[UP3]	..(((((...((((((((((((..&..))))))))))))---)))))..	UCAGACCAGGCAGAGGAGGUUUCG&AUGAACCUCCUUUG---GGUUUUU	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN1765_c0_g1_1291_TPlot.pdf
TRINITY_DN1765_c0_g1:1342	si_a222	TRINITY_DN1765_c0_g1	1331	1351	1342	-25.20	-17.00	0.674603174603175	13.5	5-17,1347-1335	1-4,1351-1348[UP5];18-21,1334-1331[UP3]	....(((((((((((((....&....)))))))))))))....	ACGCUGGAAACGUGGGUGACA&UUAAACUCAUGUUUCUAUAAU	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN1765_c0_g1_1342_TPlot.pdf
TRINITY_DN1765_c0_g1:1351	si_a310	TRINITY_DN1765_c0_g1	1339	1360	1351	-33.70	-22.00	0.652818991097923	9	1-6,1360-1355;8-10,1353-1351;11-19,1349-1341	7-7,1354-1354[SIL];x-x,1350-1350[BULt];20-21,1340-1339[UP3]	..(((((((((.(((.((((((&)))))).)))-)))))))))..	AACGUGGGUGACAUCGAAGUGA&UCGCUUGGAU-UUAUCCAUGAU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN1765_c0_g1_1351_TPlot.pdf
TRINITY_DN1765_c0_g1:1352	si_a309	TRINITY_DN1765_c0_g1	1340	1361	1352	-33.60	-22.90	0.681547619047619	7.5	1-7,1361-1355;9-11,1353-1351;12-20,1349-1341	8-8,1354-1354[SIL];x-x,1350-1350[BULt];21-21,1340-1340[UP3]	.(((((((((.(((.(((((((&))))))).)))-))))))))).	ACGUGGGUGACAUCGAAGUGAA&UUCGCUUGGAU-UUAUCCAUGA	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN1765_c0_g1_1352_TPlot.pdf
TRINITY_DN1765_c0_g1:1373	si_a356	TRINITY_DN1765_c0_g1	1362	1387	1373	-26.90	-20.60	0.765799256505576	14	1-9,1387-1379;10-21,1373-1362	x-x,1378-1374[BULt]	((((((((((((.....(((((((((&)))))))))-----))))))))))))	AUCCGGUCAGAGCAUCUUGGAAUUAG&UUAAUUCUA-----UUUUGAUCGGAU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN1765_c0_g1_1373_TPlot.pdf
TRINITY_DN1765_c0_g1:1379	si_a355	TRINITY_DN1765_c0_g1	1363	1388	1379	-26.80	-21.00	0.783582089552239	14	1-10,1388-1379;11-21,1373-1363	x-x,1378-1374[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	UCCGGUCAGAGCAUCUUGGAAUUAGU&AUUAAUUCUA-----UUUUGAUCGGA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN1765_c0_g1_1379_TPlot.pdf
TRINITY_DN1765_c0_g1:1575	si_a645	TRINITY_DN1765_c0_g1	1564	1584	1575	-29.40	-19.80	0.673469387755102	6	1-6,1584-1579;8-13,1577-1572;15-19,1570-1566	7-7,1578-1578[SIL];14-14,1571-1571[SIL];20-21,1565-1564[UP3]	..(((((.((((((.((((((&)))))).)))))).)))))..	UGCCCGGCGUAUUAGUCAAAA&UUUUGAGUAAUAUAUCGGGAA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN1765_c0_g1_1575_TPlot.pdf
TRINITY_DN1765_c0_g1:1577	si_a643	TRINITY_DN1765_c0_g1	1566	1586	1577	-28.30	-19.80	0.699646643109541	7	3-8,1584-1579;10-15,1577-1572;17-21,1570-1566	1-2,1586-1585[UP5];9-9,1578-1578[SIL];16-16,1571-1571[SIL]	(((((.((((((.((((((..&..)))))).)))))).)))))	CCCGGCGUAUUAGUCAAAAUG&UUUUUUGAGUAAUAUAUCGGG	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN1765_c0_g1_1577_TPlot.pdf
TRINITY_DN1765_c0_g1:1629	si_a74	TRINITY_DN1765_c0_g1	1618	1638	1629	-22.20	-14.50	0.653153153153153	7.5	2-11,1637-1628;13-19,1626-1620	1-1,1638-1638[UP5];12-12,1627-1627[SIL];20-21,1619-1618[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	CCAUAGUGAUGAAUAAUUUGU&UCAAAUUGUUUUUCAUUAUUA	4	0.999999999998503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1765_c0_g1_1629_TPlot.pdf
TRINITY_DN1765_c0_g1:1630	si_a73	TRINITY_DN1765_c0_g1	1619	1639	1630	-21.90	-14.50	0.662100456621005	7.5	3-12,1637-1628;14-20,1626-1620	1-2,1639-1638[UP5];13-13,1627-1627[SIL];21-21,1619-1619[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CAUAGUGAUGAAUAAUUUGUU&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999996771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1765_c0_g1_1630_TPlot.pdf
TRINITY_DN1765_c0_g1:1631	si_a72	TRINITY_DN1765_c0_g1	1620	1640	1631	-21.90	-14.50	0.662100456621005	8	4-13,1637-1628;15-21,1626-1620	1-3,1640-1638[UP5];14-14,1627-1627[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	AUAGUGAUGAAUAAUUUGUUA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999999821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1765_c0_g1_1631_TPlot.pdf
TRINITY_DN1765_c0_g1:934	si_s612	TRINITY_DN1765_c0_g1	924	944	934	-28.20	-18.90	0.670212765957447	6	1-2,944-943;3-16,941-928;18-21,927-924	x-x,942-942[BULt];17-17,x-x[BULq]	((((-((((((((((((((.((&))-)))))))))))))).))))	AUCG-UUGGAUUUGAGAGACGA&UC-UUUUUUAAAUCCAAGCGAU	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN1765_c0_g1_934_TPlot.pdf
TRINITY_DN1767_c0_g1:911	si_a709	TRINITY_DN1767_c0_g1	900	919	911	-26.60	-18.22	0.684962406015038	10.5	3-9,917-911;14-21,907-900	1-2,919-918[UP5];10-13,910-908[AILq]	((((((((...-(((((((..&..)))))))....))))))))	UGACGAUUUCG-UGGAAUGGG&UACAUUCCAAAAUAAUCGUUA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN1767_c0_g1_911_TPlot.pdf
TRINITY_DN17696_c1_g1:35	si_s192	TRINITY_DN17696_c1_g1	24	45	35	-28.00	-19.70	0.703571428571429	12	3-7,43-39;10-21,35-24	1-2,45-44[UP5];8-9,38-36[AILt]	((((((((((((...(((((..&..)))))-..))))))))))))	GUACAUUCCAGAUUGGAUUGGC&AACGAUU-AUUUUGGAAUGUAC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN17696_c1_g1_35_TPlot.pdf
TRINITY_DN1769_c0_g1:2756	si_s693	TRINITY_DN1769_c0_g1	2745	2765	2756	-23.90	-18.00	0.753138075313808	7.5	1-8,2765-2758;10-18,2756-2748	9-9,2757-2757[SIL];19-21,2747-2745[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CAUUGAAUCGACGAAUUGGAC&GUUUAAUUAGUCGAUUUAUUA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN1769_c0_g1_2756_TPlot.pdf
TRINITY_DN1769_c0_g1:2758	si_s691	TRINITY_DN1769_c0_g1	2747	2767	2758	-26.20	-18.10	0.690839694656489	8.5	3-10,2765-2758;12-20,2756-2748	1-2,2767-2766[UP5];11-11,2757-2757[SIL];21-21,2747-2747[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UUGAAUCGACGAAUUGGACAA&GAGUUUAAUUAGUCGAUUUAU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN1769_c0_g1_2758_TPlot.pdf
TRINITY_DN1769_c0_g1:2759	si_s690	TRINITY_DN1769_c0_g1	2748	2768	2759	-26.70	-18.00	0.674157303370786	9.5	4-11,2765-2758;13-21,2756-2748	1-3,2768-2766[UP5];12-12,2757-2757[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UGAAUCGACGAAUUGGACAAC&UGAGUUUAAUUAGUCGAUUUA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN1769_c0_g1_2759_TPlot.pdf
TRINITY_DN17711_c0_g1:1746	si_a635	TRINITY_DN17711_c0_g1	1735	1755	1746	-26.10	-17.30	0.662835249042146	12.5	3-10,1753-1746;12-17,1744-1739	1-2,1755-1754[UP5];11-11,1745-1745[SIL];18-21,1738-1735[UP3]	....((((((.((((((((..&..)))))))).))))))....	AUGCCUCGAGUGAGUCGACGC&AUGUCGAUUUUUUUGAGUAAU	4	0.999999999983242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN17711_c0_g1_1746_TPlot.pdf
TRINITY_DN17719_c1_g1:196	si_s485	TRINITY_DN17719_c1_g1	184	205	196	-18.10	-12.50	0.69060773480663	5.5	2-13,204-193;14-20,191-185	1-1,205-205[UP5];x-x,192-192[BULt];21-21,184-184[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	GUUGUAUUCUAGAUAGAUAUAU&CUAUAUUUAUUUA-AAUAUAAA	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN17719_c1_g1_196_TPlot.pdf
TRINITY_DN17724_c0_g1:1447	si_a742	TRINITY_DN17724_c0_g1	1432	1456	1447	-44.90	-32.20	0.717149220489978	11	2-11,1455-1446;12-19,1441-1434	1-1,1456-1456[UP5];x-x,1445-1442[BULt];20-21,1433-1432[UP3]	..((((((((....((((((((((.&.))))))))))----))))))))..	UUAGGUUCAUUGCAGGCCAGGGGUC&UACCCCUGGCC----AUGAACCUCC	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a742_TRINITY_DN17724_c0_g1_1447_TPlot.pdf
TRINITY_DN17724_c0_g2:503	si_s47	TRINITY_DN17724_c0_g2	492	512	503	-26.30	-18.20	0.692015209125475	13.5	5-18,508-495	1-4,512-509[UP5];19-21,494-492[UP3]	...((((((((((((((....&....))))))))))))))...	CACGCUUGAGAUCCGGUCUCA&AAUAAUUGGAUUUCAAGUUAG	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN17724_c0_g2_503_TPlot.pdf
TRINITY_DN17734_c0_g1:2621	si_a758	TRINITY_DN17734_c0_g1	2609	2630	2621	-34.00	-23.10	0.679411764705882	7	1-10,2630-2621;11-18,2619-2612	x-x,2620-2620[BULt];19-21,2611-2609[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UUUUUAGAAACACUAAAGGAGG&CCUCCUUUGG-GUUUUUGAUUG	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN17734_c0_g1_2621_TPlot.pdf
TRINITY_DN1774_c0_g1:484	si_a788	TRINITY_DN1774_c0_g1	474	493	484	-24.80	-18.00	0.725806451612903	7.5	2-15,492-479;18-20,477-475	1-1,493-493[UP5];16-17,478-478[AILq];21-21,474-474[UP3]	.(((.-((((((((((((((.&.))))))))))))))..))).	CUGGU-GAUGGGAAAGUAGAG&UUCUAUUUUUCUAUUUUCCAA	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1774_c0_g1_484_TPlot.pdf
TRINITY_DN17751_c0_g1:1028	si_a786	TRINITY_DN17751_c0_g1	1011	1037	1028	-26.60	-17.86	0.671428571428571	10	1-14,1037-1024;16-21,1016-1011	15-15,1023-1017[AILt]	((((((.......((((((((((((((&))))))))))))))------.))))))	GGAAAAACACUUAAGGGGAAUAGAAGA&UCUUCUAUUUUUCU------AUUUUCC	1	0.282614287740427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN17751_c0_g1_1028_TPlot.pdf
TRINITY_DN17751_c0_g1:1032	si_a782	TRINITY_DN17751_c0_g1	1021	1041	1032	-26.40	-20.30	0.768939393939394	7.5	3-18,1039-1024	1-2,1041-1040[UP5];19-21,1023-1021[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUAAGGGGAAUAGAAGAGUAU&CAACUCUUCUAUUUUUCUAUU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN17751_c0_g1_1032_TPlot.pdf
TRINITY_DN17751_c0_g1:1033	si_a781	TRINITY_DN17751_c0_g1	1022	1042	1033	-27.40	-20.30	0.740875912408759	8.5	4-19,1039-1024	1-3,1042-1040[UP5];20-21,1023-1022[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAAGGGGAAUAGAAGAGUAUU&UCAACUCUUCUAUUUUUCUAU	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN17751_c0_g1_1033_TPlot.pdf
TRINITY_DN1775_c0_g1:1961	si_s694	TRINITY_DN1775_c0_g1	1950	1970	1961	-23.90	-16.20	0.677824267782427	12	6-12,1965-1959;14-21,1957-1950	1-5,1970-1966[UP5];13-13,1958-1958[SIL]	((((((((.(((((((.....&.....))))))).))))))))	CUGAUGAACCGACUGAAGAUG&UUUAAUUAGUCGAUUUAUUAG	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN1775_c0_g1_1961_TPlot.pdf
TRINITY_DN1775_c0_g1:3988	si_s446	TRINITY_DN1775_c0_g1	3976	3997	3988	-21.30	-14.00	0.657276995305164	8	1-10,3997-3988;11-16,3986-3981	x-x,3987-3987[BULt];17-21,3980-3976[UP3]	.....((((((.((((((((((&))))))))))-)))))).....	AACGAGUUGUUAAUAUAUAGUA&UAUUAUAUAU-AACAACAAUUA	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN1775_c0_g1_3988_TPlot.pdf
TRINITY_DN1775_c0_g1:3989	si_s445	TRINITY_DN1775_c0_g1	3977	3998	3989	-21.10	-14.00	0.663507109004739	8	2-11,3997-3988;12-17,3986-3981	1-1,3998-3998[UP5];x-x,3987-3987[BULt];18-21,3980-3977[UP3]	....((((((.((((((((((.&.))))))))))-))))))....	ACGAGUUGUUAAUAUAUAGUAA&AUAUUAUAUAU-AACAACAAUU	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN1775_c0_g1_3989_TPlot.pdf
TRINITY_DN1775_c0_g1:509	si_a786	TRINITY_DN1775_c0_g1	498	519	509	-26.60	-17.50	0.657894736842105	6.5	1-9,519-511;10-17,509-502;19-20,500-499	x-x,510-510[BULt];18-18,501-501[SIL];21-21,498-498[UP3]	.((.((((((((.(((((((((&)))))))))-)))))))).)).	UGACGAUAGAAACAGUAGAGGA&UCUUCUAUU-UUUCUAUUUUCC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1775_c0_g1_509_TPlot.pdf
TRINITY_DN1775_c0_g1:658	si_s799	TRINITY_DN1775_c0_g1	647	667	658	-30.00	-20.80	0.693333333333333	7	4-16,664-652;18-21,650-647	1-3,667-665[UP5];17-17,651-651[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GGUAUCGAAGAUGAAAUAGCC&UCGUAUUUUAUCUUCGUUACC	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN1775_c0_g1_658_TPlot.pdf
TRINITY_DN1775_c0_g2:160	si_a595	TRINITY_DN1775_c0_g2	149	169	160	-30.30	-20.40	0.673267326732673	10.5	2-3,168-167;6-17,164-153	1-1,169-169[UP5];4-5,166-165[SIL];18-21,152-149[UP3]	....((((((((((((..((.&.))..))))))))))))....	UUCAGUGAAGAUUCUGGACUG&AAGGACAGAAUUUUCGCAAUU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN1775_c0_g2_160_TPlot.pdf
TRINITY_DN1775_c0_g2:162	si_a593	TRINITY_DN1775_c0_g2	151	172	162	-32.90	-21.70	0.659574468085106	9	1-3,172-170;4-5,168-167;8-19,164-153	x-x,169-169[BULt];6-7,166-165[SIL];20-21,152-151[UP3]	..((((((((((((..((.(((&)))-))..))))))))))))..	CAGUGAAGAUUCUGGACUGUCU&AGA-AGGACAGAAUUUUCGCAA	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN1775_c0_g2_162_TPlot.pdf
TRINITY_DN1775_c0_g4:44	si_s524	TRINITY_DN1775_c0_g4	33	53	44	-23.90	-16.50	0.690376569037657	5.5	1-11,53-43;14-20,40-34	12-13,42-41[SIL];21-21,33-33[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	CCAAGAAUAUUUUCGGAUUAA&UUAAUUCGAAAUCAUUUUUGA	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN1775_c0_g4_44_TPlot.pdf
TRINITY_DN1775_c0_g4:45	si_s523	TRINITY_DN1775_c0_g4	34	54	45	-24.50	-18.60	0.759183673469388	3.5	1-12,54-43;15-21,40-34	13-14,42-41[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	CAAGAAUAUUUUCGGAUUAAG&CUUAAUUCGAAAUCAUUUUUG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN1775_c0_g4_45_TPlot.pdf
TRINITY_DN1775_c0_g4:46	si_s522	TRINITY_DN1775_c0_g4	35	55	46	-23.80	-17.50	0.735294117647059	3.5	1-13,55-43;16-21,40-35	14-15,42-41[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	AAGAAUAUUUUCGGAUUAAGA&UCUUAAUUCGAAAUCAUUUUU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN1775_c0_g4_46_TPlot.pdf
TRINITY_DN1775_c0_g4:584	si_s205	TRINITY_DN1775_c0_g4	572	597	584	-34.90	-23.20	0.664756446991404	12	1-6,597-592;7-18,587-576;19-21,574-572	x-x,591-588[BULt];x-x,575-575[BULt]	(((.((((((((((((....((((((&))))))----))))))))))))-)))	UCGUGGCACAAUUGGUAGCGACGUUC&GAAUGU----ACCAGUUGUGUU-CGA	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN1775_c0_g4_584_TPlot.pdf
TRINITY_DN1775_c0_g4:872	si_a183	TRINITY_DN1775_c0_g4	861	882	872	-30.10	-20.60	0.684385382059801	8	1-5,882-878;6-8,876-874;10-19,872-863	x-x,877-877[BULt];9-9,873-873[SIL];20-21,862-861[UP3]	..((((((((((.(((.(((((&)))))-))).))))))))))..	CUCAGGGAAGGACAUUAGUCUA&UAGAU-AAUAUCUUUCCCUGUU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN1775_c0_g4_872_TPlot.pdf
TRINITY_DN17769_c0_g1:181	si_a191	TRINITY_DN17769_c0_g1	171	190	181	-32.00	-21.00	0.65625	5.5	1-6,190-185;8-12,183-179;14-21,178-171	7-7,184-184[SIL];13-13,x-x[BULq]	((((((((-(((((.((((((&)))))).))))).))))))))	UGUUAGUG-GCAGGAAAGGAU&AUCUUUCCCUGUUCACUAAUA	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN17769_c0_g1_181_TPlot.pdf
TRINITY_DN17772_c0_g1:536	si_s584	TRINITY_DN17772_c0_g1	525	545	536	-26.30	-19.60	0.745247148288973	10	6-18,540-528;20-21,526-525	1-5,545-541[UP5];19-19,527-527[SIL]	((.(((((((((((((.....&.....))))))))))))).))	GGUUUUAUCCAUGAUUGGAGC&AAAAAAAUCAUGGAUAAAUCC	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s584_TRINITY_DN17772_c0_g1_536_TPlot.pdf
TRINITY_DN1777_c0_g1:383	si_s487	TRINITY_DN1777_c0_g1	372	391	383	-18.40	-13.30	0.722826086956522	8	1-7,391-385;10-20,383-373	8-9,384-384[AILq];21-21,372-372[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	CGUUUAUAUUUAU-UGAGUGU&AUAUUUAUUUAAAUAUAAACA	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN1777_c0_g1_383_TPlot.pdf
TRINITY_DN1777_c1_g1:4795	si_a22	TRINITY_DN1777_c1_g1	4783	4804	4795	-23.50	-18.20	0.774468085106383	4	1-13,4804-4792;14-19,4790-4785	x-x,4791-4791[BULt];20-21,4784-4783[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UGUAGAACAUAAAAAUAGAUAG&CUAUUUAUUUUUA-GUUCUAAG	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN1777_c1_g1_4795_TPlot.pdf
TRINITY_DN1777_c1_g1:4797	si_a20	TRINITY_DN1777_c1_g1	4785	4806	4797	-26.70	-18.40	0.689138576779026	5	3-15,4804-4792;16-21,4790-4785	1-2,4806-4805[UP5];x-x,4791-4791[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	UAGAACAUAAAAAUAGAUAGAA&GCCUAUUUAUUUUUA-GUUCUA	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN1777_c1_g1_4797_TPlot.pdf
TRINITY_DN1777_c1_g1:6024	si_a622	TRINITY_DN1777_c1_g1	6013	6033	6024	-35.10	-23.70	0.675213675213675	9.5	3-11,6031-6023;13-15,6021-6019;17-19,6017-6015	1-2,6033-6032[UP5];12-12,6022-6022[SIL];16-16,6018-6018[SIL];20-21,6014-6013[UP3]	..(((.(((.(((((((((..&..))))))))).))).)))..	UACGAGGUAUUGCGCCUAGGC&GACUAGGCGUAUUAUGUCGAU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN1777_c1_g1_6024_TPlot.pdf
TRINITY_DN1777_c1_g2:62	si_a754	TRINITY_DN1777_c1_g2	51	75	62	-34.60	-24.70	0.713872832369942	14	1-7,75-69;8-18,64-54	x-x,68-65[BULt];19-21,53-51[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UCUGGACCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN1777_c1_g2_62_TPlot.pdf
TRINITY_DN1777_c2_g1:611	si_a446	TRINITY_DN1777_c2_g1	600	620	611	-25.50	-17.10	0.670588235294118	6.5	2-14,619-607;16-17,605-604;20-21,601-600	1-1,620-620[UP5];15-15,606-606[SIL];18-19,603-602[SIL]	((..((.(((((((((((((.&.))))))))))))).))..))	GUUUCAUCAAUUGUCUCAUGG&AUAUGAGAUAAUUGUUGUUAU	4	0.999067011191199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN1777_c2_g1_611_TPlot.pdf
TRINITY_DN1777_c4_g1:732	si_a754	TRINITY_DN1777_c4_g1	721	745	732	-34.60	-24.20	0.699421965317919	14.5	1-7,745-739;8-17,734-725	x-x,738-735[BULt];18-21,724-721[UP3]	....((((((((((....(((((((&)))))))----))))))))))....	UCCUGACCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN1777_c4_g1_732_TPlot.pdf
TRINITY_DN17790_c0_g1:214	si_a123	TRINITY_DN17790_c0_g1	203	224	214	-26.60	-20.50	0.770676691729323	7.5	2-9,223-216;10-20,214-204	1-1,224-224[UP5];x-x,215-215[BULt];21-21,203-203[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	GUGCUAUUGCUAUUGAAGCAGC&CUUGUUUUA-UAGCAAUAGUAA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN17790_c0_g1_214_TPlot.pdf
TRINITY_DN17790_c0_g1:218	si_a120	TRINITY_DN17790_c0_g1	206	226	218	-30.50	-21.50	0.704918032786885	7	2-5,225-222;7-12,221-216;13-21,214-206	1-1,226-226[UP5];6-6,x-x[BULq];x-x,215-215[BULt]	(((((((((.((((((-((((.&.)))).))))))-)))))))))	CUAUUGCUAUUGAAGC-AGCUG&GAGCUUGUUUUA-UAGCAAUAG	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN17790_c0_g1_218_TPlot.pdf
TRINITY_DN17791_c0_g1:468	si_s805	TRINITY_DN17791_c0_g1	457	477	468	-28.60	-21.40	0.748251748251748	8.5	3-16,475-462;18-20,460-458	1-2,477-476[UP5];17-17,461-461[SIL];21-21,457-457[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	UGAAUGGGUGAUGGAGAUACC&UUUAUCUUCGUUACCUUUUCU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN17791_c0_g1_468_TPlot.pdf
TRINITY_DN17796_c0_g1:244	si_a678	TRINITY_DN17796_c0_g1	233	250	244	-36.30	-25.70	0.707988980716253	8.5	1-5,250-246;9-21,245-233	6-8,x-x[BULq]	(((((((((((((---(((((&)))))...)))))))))))))	UUGGGACCGCGUG---GAGGA&UCCUUAUUCACGCGGUUUCGA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN17796_c0_g1_244_TPlot.pdf
TRINITY_DN17799_c0_g1:1304	si_s789	TRINITY_DN17799_c0_g1	1293	1313	1304	-26.20	-19.00	0.725190839694656	12.5	5-16,1309-1298	1-4,1313-1310[UP5];17-21,1297-1293[UP3]	.....((((((((((((....&....)))))))))))).....	ACUCUGUACGAGCUUGUGCAG&UAAAACAAGCUCGUAUUUUAU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN17799_c0_g1_1304_TPlot.pdf
TRINITY_DN177_c0_g3:1142	si_a142	TRINITY_DN177_c0_g3	1131	1151	1142	-23.50	-15.40	0.65531914893617	9	4-17,1148-1135;19-20,1133-1132	1-3,1151-1149[UP5];18-18,1134-1134[SIL];21-21,1131-1131[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	AUAUAACAACAAUGGUUACAC&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999960662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN177_c0_g3_1142_TPlot.pdf
TRINITY_DN177_c0_g3:1147	si_a137	TRINITY_DN177_c0_g3	1136	1164	1147	-26.50	-17.40	0.656603773584906	18.5	2-8,1163-1157;9-21,1148-1136	1-1,1164-1164[UP5];x-x,1156-1149[BULt]	(((((((((((((........(((((((.&.)))))))--------)))))))))))))	ACAACAAUGGUUACACACCAAAUUACUAA&AUAGUAAU--------UAAUCGUUGUUGU	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN177_c0_g3_1147_TPlot.pdf
TRINITY_DN17807_c0_g1:830	si_s889	TRINITY_DN17807_c0_g1	819	839	830	-28.80	-19.00	0.659722222222222	11	5-20,835-820	1-4,839-836[UP5];21-21,819-819[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGGGGGAGAGCUUAUUUUAGG&AAAUAAAUAGGCUUUCUCUUC	4	0.999961952797637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN17807_c0_g1_830_TPlot.pdf
TRINITY_DN17807_c0_g1:831	si_s888	TRINITY_DN17807_c0_g1	820	840	831	-26.80	-18.80	0.701492537313433	12	6-21,835-820	1-5,840-836[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGGGAGAGCUUAUUUUAGGU&AAAAUAAAUAGGCUUUCUCUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN17807_c0_g1_831_TPlot.pdf
TRINITY_DN17807_c0_g1:832	si_s887	TRINITY_DN17807_c0_g1	821	841	832	-26.80	-18.50	0.690298507462687	13.5	7-21,835-821	1-6,841-836[UP5]	(((((((((((((((......&......)))))))))))))))	GGGGAGAGCUUAUUUUAGGUG&AAAAAUAAAUAGGCUUUCUCU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN17807_c0_g1_832_TPlot.pdf
TRINITY_DN1780_c0_g1:798	si_s73	TRINITY_DN1780_c0_g1	789	807	798	-24.00	-15.60	0.65	5.5	1-13,807-795;17-21,793-789	14-16,794-794[AILq]	(((((.--(((((((((((((&)))))))))))))...)))))	GAAGGC--GGAGAAAAAUAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1780_c0_g1_798_TPlot.pdf
TRINITY_DN1781_c0_g1:295	si_a808	TRINITY_DN1781_c0_g1	284	304	295	-34.90	-23.50	0.673352435530086	7.5	2-6,303-299;9-19,296-286	1-1,304-304[UP5];7-8,298-297[SIL];20-21,285-284[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	UCCUUUUUCUUCGAAUCGGAA&AUCCGAAGCGAAGAAGAAGAA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN1781_c0_g1_295_TPlot.pdf
TRINITY_DN1784_c0_g1:1391	si_a870	TRINITY_DN1784_c0_g1	1380	1400	1391	-24.80	-16.50	0.665322580645161	10.5	3-8,1398-1393;10-19,1391-1382	1-2,1400-1399[UP5];9-9,1392-1392[SIL];20-21,1381-1380[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UAUGCAGCUGGAGCUUUAGGU&UAUUAAAGAUUUAGUUGCAAU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN1784_c0_g1_1391_TPlot.pdf
TRINITY_DN1784_c0_g1:1596	si_a319	TRINITY_DN1784_c0_g1	1586	1605	1596	-22.40	-14.80	0.660714285714286	8	2-10,1604-1596;12-21,1595-1586	1-1,1605-1605[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	AGUAAGAAAA-UAUGGGUGGG&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN1784_c0_g1_1596_TPlot.pdf
TRINITY_DN1784_c0_g1:787	si_s79	TRINITY_DN1784_c0_g1	775	796	787	-26.20	-18.30	0.698473282442748	6.5	1-11,796-786;12-18,784-778	x-x,785-785[BULt];19-21,777-775[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UUAGAGAAAGAGAAAGGAAAAA&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1784_c0_g1_787_TPlot.pdf
TRINITY_DN1784_c0_g1:789	si_s77	TRINITY_DN1784_c0_g1	777	798	789	-25.50	-19.40	0.76078431372549	4.5	2-13,797-786;14-20,784-778	1-1,798-798[UP5];x-x,785-785[BULt];21-21,777-777[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	AGAGAAAGAGAAAGGAAAAAAG&UUUUUUUUCUUUC-CUUUCUUC	4	0.999999999971337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1784_c0_g1_789_TPlot.pdf
TRINITY_DN1784_c0_g1:790	si_s76	TRINITY_DN1784_c0_g1	778	799	790	-23.60	-19.20	0.813559322033898	5.5	3-14,797-786;15-21,784-778	1-2,799-798[UP5];x-x,785-785[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	GAGAAAGAGAAAGGAAAAAAGA&AUUUUUUUUCUUUC-CUUUCUU	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1784_c0_g1_790_TPlot.pdf
TRINITY_DN1784_c0_g1:791	si_s75	TRINITY_DN1784_c0_g1	779	800	791	-24.00	-18.10	0.754166666666667	7	4-15,797-786;16-21,784-779	1-3,800-798[UP5];x-x,785-785[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	AGAAAGAGAAAGGAAAAAAGAG&UAUUUUUUUUCUUUC-CUUUCU	2	0.999999336640072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1784_c0_g1_791_TPlot.pdf
TRINITY_DN1784_c0_g1:792	si_s74	TRINITY_DN1784_c0_g1	780	800	792	-25.00	-17.60	0.704	5	1-2,800-799;4-16,798-786;17-21,784-780	3-3,x-x[BULq];x-x,785-785[BULt]	(((((.(((((((((((((-((&)).)))))))))))))-)))))	GAAAGAGAAAGGAAAAAAG-AG&CUAUUUUUUUUCUUUC-CUUUC	2	0.999999998248444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1784_c0_g1_792_TPlot.pdf
TRINITY_DN1784_c0_g1:794	si_s72	TRINITY_DN1784_c0_g1	782	802	794	-24.10	-16.00	0.663900414937759	4.5	1-4,802-799;6-18,798-786;19-21,784-782	5-5,x-x[BULq];x-x,785-785[BULt]	(((.(((((((((((((-((((&)))).)))))))))))))-)))	AAGAGAAAGGAAAAAAG-AGAA&UUCUAUUUUUUUUCUUUC-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1784_c0_g1_794_TPlot.pdf
TRINITY_DN17854_c1_g1:159	si_a836	TRINITY_DN17854_c1_g1	148	168	159	-24.10	-16.20	0.672199170124481	14.5	8-20,161-149	1-7,168-162[UP5];21-21,148-148[UP3]	.(((((((((((((.......&.......))))))))))))).	CUAGCAAUUUCUAUCGAGGUC&AAAAAAAAUAGAAGUUGCUAA	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN17854_c1_g1_159_TPlot.pdf
TRINITY_DN1786_c0_g1:4470	si_s322	TRINITY_DN1786_c0_g1	4455	4479	4470	-31.50	-21.90	0.695238095238095	11	1-11,4479-4469;12-17,4464-4459;19-21,4457-4455	x-x,4468-4465[BULt];18-18,4458-4458[SIL]	(((.((((((....(((((((((((&)))))))))))----)))))).)))	CGUCUGUUUGAUGCUAACAGGGAGG&CCUUCUUGUUA----CAAACAUACG	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s322_TRINITY_DN1786_c0_g1_4470_TPlot.pdf
TRINITY_DN1786_c0_g1:5190	si_a74	TRINITY_DN1786_c0_g1	5179	5199	5190	-22.20	-14.80	0.666666666666667	14	7-21,5193-5179	1-6,5199-5194[UP5]	(((((((((((((((......&......)))))))))))))))	UGAUGGUGGAAGACAGAGGAA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999998027039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1786_c0_g1_5190_TPlot.pdf
TRINITY_DN1786_c0_g1:5582	si_a665	TRINITY_DN1786_c0_g1	5571	5591	5582	-29.60	-20.50	0.692567567567568	6.5	3-11,5589-5581;13-16,5579-5576;18-21,5574-5571	1-2,5591-5590[UP5];12-12,5580-5580[SIL];17-17,5575-5575[SIL]	((((.((((.(((((((((..&..))))))))).)))).))))	GAUACGGAAGCAAUAGGCAGU&AAUGCCUAUUGAUUCCUUAUU	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN1786_c0_g1_5582_TPlot.pdf
TRINITY_DN1786_c0_g1:5583	si_a664	TRINITY_DN1786_c0_g1	5572	5592	5583	-29.60	-19.30	0.652027027027027	7	4-12,5589-5581;14-17,5579-5576;19-21,5574-5572	1-3,5592-5590[UP5];13-13,5580-5580[SIL];18-18,5575-5575[SIL]	(((.((((.(((((((((...&...))))))))).)))).)))	AUACGGAAGCAAUAGGCAGUG&AAAUGCCUAUUGAUUCCUUAU	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN1786_c0_g1_5583_TPlot.pdf
TRINITY_DN1786_c0_g1:5666	si_a332	TRINITY_DN1786_c0_g1	5650	5675	5666	-30.60	-20.00	0.65359477124183	13.5	1-10,5675-5666;11-15,5661-5657;16-20,5655-5651	x-x,5665-5662[BULt];x-x,5656-5656[BULt];21-21,5650-5650[UP3]	.(((((.(((((....((((((((((&))))))))))----)))))-))))).	AUUCGGCGACGAUAGCGGAAUGGAAG&UUUUUAUUCC----UUGUC-CCGAAA	3	0.99999919223585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN1786_c0_g1_5666_TPlot.pdf
TRINITY_DN1786_c0_g1:5667	si_a331	TRINITY_DN1786_c0_g1	5651	5676	5667	-30.60	-20.20	0.660130718954248	13.5	2-11,5675-5666;12-16,5661-5657;17-21,5655-5651	1-1,5676-5676[UP5];x-x,5665-5662[BULt];x-x,5656-5656[BULt]	(((((.(((((....((((((((((.&.))))))))))----)))))-)))))	UUCGGCGACGAUAGCGGAAUGGAAGG&UUUUUUAUUCC----UUGUC-CCGAA	2	0.999775391228409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN1786_c0_g1_5667_TPlot.pdf
TRINITY_DN1786_c0_g1:5817	si_a440	TRINITY_DN1786_c0_g1	5807	5826	5817	-30.80	-20.20	0.655844155844156	6.5	1-11,5826-5816;13-16,5815-5812;18-21,5810-5807	12-12,x-x[BULq];17-17,5811-5811[SIL]	((((.((((-(((((((((((&))))))))))).)))).))))	ACAGGUAUC-CAUGUCUGACG&CGUUGGAUAUGAGAUAAUUGU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN1786_c0_g1_5817_TPlot.pdf
TRINITY_DN1786_c0_g1:5968	si_a29	TRINITY_DN1786_c0_g1	5957	5977	5968	-31.00	-21.70	0.7	7.5	1-12,5977-5966;14-14,5963-5963;16-20,5962-5958	13-13,5965-5964[AILt];15-15,x-x[BULq];21-21,5957-5957[UP3]	.(((((-(..((((((((((((&))))))))))))-.).))))).	CGCCGG-CGAUAGAGCUAAAGA&UUUUUAGUUCUA-AGACCGGUA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN1786_c0_g1_5968_TPlot.pdf
TRINITY_DN1786_c0_g1:5969	si_a28	TRINITY_DN1786_c0_g1	5958	5978	5969	-30.70	-21.50	0.700325732899023	6.5	2-13,5977-5966;15-15,5963-5963;17-21,5962-5958	1-1,5978-5978[UP5];14-14,5965-5964[AILt];16-16,x-x[BULq]	(((((-(..((((((((((((.&.))))))))))))-.).)))))	GCCGG-CGAUAGAGCUAAAGAA&AUUUUUAGUUCUA-AGACCGGU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN1786_c0_g1_5969_TPlot.pdf
TRINITY_DN1786_c0_g1:5970	si_a27	TRINITY_DN1786_c0_g1	5959	5979	5970	-30.30	-20.00	0.66006600660066	8	3-14,5977-5966;16-16,5963-5963;18-21,5962-5959	1-2,5979-5978[UP5];15-15,5965-5964[AILt];17-17,x-x[BULq]	((((-(..((((((((((((..&..))))))))))))-.).))))	CCGG-CGAUAGAGCUAAAGAAA&UAUUUUUAGUUCUA-AGACCGG	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN1786_c0_g1_5970_TPlot.pdf
TRINITY_DN1786_c0_g1:6357	si_s73	TRINITY_DN1786_c0_g1	6346	6366	6357	-24.00	-17.10	0.7125	9	2-15,6365-6352;17-18,6350-6349	1-1,6366-6366[UP5];16-16,6351-6351[SIL];19-21,6348-6346[UP3]	...((.((((((((((((((.&.)))))))))))))).))...	AACGGUGGGAAGAAAGAUGGG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1786_c0_g1_6357_TPlot.pdf
TRINITY_DN1786_c0_g1:6358	si_s72	TRINITY_DN1786_c0_g1	6347	6367	6358	-24.10	-18.70	0.775933609958506	8	1-16,6367-6352;18-19,6350-6349	17-17,6351-6351[SIL];20-21,6348-6347[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	ACGGUGGGAAGAAAGAUGGGA&UUCUAUUUUUUUUCUUUCCUU	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1786_c0_g1_6358_TPlot.pdf
TRINITY_DN1786_c0_g1:6360	si_s70	TRINITY_DN1786_c0_g1	6349	6369	6360	-25.80	-21.30	0.825581395348837	6.5	2-18,6368-6352;20-21,6350-6349	1-1,6369-6369[UP5];19-19,6351-6351[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GGUGGGAAGAAAGAUGGGAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1786_c0_g1_6360_TPlot.pdf
TRINITY_DN1786_c0_g1:6361	si_s69	TRINITY_DN1786_c0_g1	6350	6370	6361	-23.40	-17.90	0.764957264957265	8.5	3-19,6368-6352;21-21,6350-6350	1-2,6370-6369[UP5];20-20,6351-6351[SIL]	(.(((((((((((((((((..&..))))))))))))))))).)	GUGGGAAGAAAGAUGGGAGAA&AACUUCUAUUUUUUUUCUUUC	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1786_c0_g1_6361_TPlot.pdf
TRINITY_DN1786_c0_g1:6362	si_s68	TRINITY_DN1786_c0_g1	6351	6371	6362	-23.10	-17.60	0.761904761904762	10.5	4-20,6368-6352	1-3,6371-6369[UP5];21-21,6351-6351[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGGGAAGAAAGAUGGGAGAAC&CAACUUCUAUUUUUUUUCUUU	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1786_c0_g1_6362_TPlot.pdf
TRINITY_DN1786_c0_g1:6363	si_s67	TRINITY_DN1786_c0_g1	6352	6375	6363	-25.60	-20.60	0.8046875	10.5	1-4,6375-6372;5-21,6368-6352	x-x,6371-6369[BULt]	(((((((((((((((((...((((&))))---)))))))))))))))))	GGGAAGAAAGAUGGGAGAACUUGC&GCAA---CUUCUAUUUUUUUUCUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1786_c0_g1_6363_TPlot.pdf
TRINITY_DN1786_c0_g1:6364	si_s66	TRINITY_DN1786_c0_g1	6353	6376	6364	-26.30	-20.40	0.775665399239544	10.5	2-5,6375-6372;6-21,6368-6353	1-1,6376-6376[UP5];x-x,6371-6369[BULt]	((((((((((((((((...((((.&.))))---))))))))))))))))	GGAAGAAAGAUGGGAGAACUUGCA&AGCAA---CUUCUAUUUUUUUUCU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN1786_c0_g1_6364_TPlot.pdf
TRINITY_DN1786_c0_g1:6365	si_s65	TRINITY_DN1786_c0_g1	6354	6377	6365	-26.00	-19.10	0.734615384615385	12	3-6,6375-6372;7-21,6368-6354	1-2,6377-6376[UP5];x-x,6371-6369[BULt]	(((((((((((((((...((((..&..))))---)))))))))))))))	GAAGAAAGAUGGGAGAACUUGCAA&UAGCAA---CUUCUAUUUUUUUUC	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN1786_c0_g1_6365_TPlot.pdf
TRINITY_DN1786_c0_g1:6532	si_a628	TRINITY_DN1786_c0_g1	6521	6540	6532	-27.10	-17.80	0.656826568265683	13.5	1-4,6540-6537;10-20,6532-6522	5-9,6536-6533[AILq];21-21,6521-6521[UP3]	.(((((((((((....-((((&)))).....))))))))))).	CGAAAAAUCGGCCGCG-GCGC&GCGUAUUAUGUCGAUUUUUUU	2	0.99996527576803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN1786_c0_g1_6532_TPlot.pdf
TRINITY_DN1786_c0_g1:7145	si_s526	TRINITY_DN1786_c0_g1	7134	7157	7145	-25.60	-16.90	0.66015625	9	1-8,7157-7150;9-18,7146-7137	x-x,7149-7147[BULt];19-21,7136-7134[UP3]	...((((((((((...((((((((&))))))))---))))))))))...	GCCCAAAAAUGAUACGUUCGAAUU&AAUUCGAA---AUCAUUUUUGAUC	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN1786_c0_g1_7145_TPlot.pdf
TRINITY_DN1786_c0_g1:7146	si_s525	TRINITY_DN1786_c0_g1	7135	7158	7146	-24.00	-17.40	0.725	8.5	1-9,7158-7150;10-19,7146-7137	x-x,7149-7147[BULt];20-21,7136-7135[UP3]	..((((((((((...(((((((((&)))))))))---))))))))))..	CCCAAAAAUGAUACGUUCGAAUUG&UAAUUCGAA---AUCAUUUUUGAU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN1786_c0_g1_7146_TPlot.pdf
TRINITY_DN1786_c0_g1:7150	si_s524	TRINITY_DN1786_c0_g1	7136	7159	7150	-23.90	-19.20	0.803347280334728	8	1-10,7159-7150;11-20,7146-7137	x-x,7149-7147[BULt];21-21,7136-7136[UP3]	.((((((((((...((((((((((&))))))))))---)))))))))).	CCAAAAAUGAUACGUUCGAAUUGA&UUAAUUCGAA---AUCAUUUUUGA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN1786_c0_g1_7150_TPlot.pdf
TRINITY_DN1786_c0_g1:7151	si_s523	TRINITY_DN1786_c0_g1	7137	7160	7151	-24.50	-21.30	0.869387755102041	7	1-11,7160-7150;12-21,7146-7137	x-x,7149-7147[BULt]	((((((((((...(((((((((((&)))))))))))---))))))))))	CAAAAAUGAUACGUUCGAAUUGAG&CUUAAUUCGAA---AUCAUUUUUG	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN1786_c0_g1_7151_TPlot.pdf
TRINITY_DN1786_c0_g1:7152	si_s522	TRINITY_DN1786_c0_g1	7138	7161	7152	-23.80	-20.20	0.848739495798319	7	1-12,7161-7150;13-21,7146-7138	x-x,7149-7147[BULt]	(((((((((...((((((((((((&))))))))))))---)))))))))	AAAAAUGAUACGUUCGAAUUGAGA&UCUUAAUUCGAA---AUCAUUUUU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN1786_c0_g1_7152_TPlot.pdf
TRINITY_DN1786_c0_g1:7153	si_s521	TRINITY_DN1786_c0_g1	7139	7162	7153	-23.90	-19.60	0.820083682008368	5	2-13,7161-7150;14-21,7146-7139	1-1,7162-7162[UP5];x-x,7149-7147[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	AAAAUGAUACGUUCGAAUUGAGAG&UUCUUAAUUCGAA---AUCAUUUU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN1786_c0_g1_7153_TPlot.pdf
TRINITY_DN1786_c0_g1:7154	si_s520	TRINITY_DN1786_c0_g1	7140	7163	7154	-24.00	-18.70	0.779166666666667	7	3-14,7161-7150;15-21,7146-7140	1-2,7163-7162[UP5];x-x,7149-7147[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	AAAUGAUACGUUCGAAUUGAGAGA&AUUCUUAAUUCGAA---AUCAUUU	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN1786_c0_g1_7154_TPlot.pdf
TRINITY_DN1786_c0_g1:7155	si_s519	TRINITY_DN1786_c0_g1	7141	7164	7155	-24.40	-17.80	0.729508196721312	9	4-15,7161-7150;16-21,7146-7141	1-3,7164-7162[UP5];x-x,7149-7147[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	AAUGAUACGUUCGAAUUGAGAGAA&UAUUCUUAAUUCGAA---AUCAUU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN1786_c0_g1_7155_TPlot.pdf
TRINITY_DN1786_c0_g1:7156	si_s518	TRINITY_DN1786_c0_g1	7142	7165	7156	-24.60	-16.90	0.686991869918699	11	5-16,7161-7150;17-21,7146-7142	1-4,7165-7162[UP5];x-x,7149-7147[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	AUGAUACGUUCGAAUUGAGAGAAA&AUAUUCUUAAUUCGAA---AUCAU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN1786_c0_g1_7156_TPlot.pdf
TRINITY_DN1786_c0_g1:7178	si_a499	TRINITY_DN1786_c0_g1	7166	7187	7178	-35.20	-23.20	0.659090909090909	8.5	1-9,7187-7179;11-16,7177-7172;17-20,7170-7167	10-10,7178-7178[SIL];x-x,7171-7171[BULt];21-21,7166-7166[UP3]	.((((.((((((.(((((((((&))))))))).))))))-)))).	UCAAGAGGAGACAGGAAGCGGC&GUCGUUUUUCGUCUUC-CUUGG	2	0.999999870086061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1786_c0_g1_7178_TPlot.pdf
TRINITY_DN1786_c0_g1:7179	si_a498	TRINITY_DN1786_c0_g1	7167	7188	7179	-33.50	-22.20	0.662686567164179	8.5	2-10,7187-7179;12-17,7177-7172;18-21,7170-7167	1-1,7188-7188[UP5];11-11,7178-7178[SIL];x-x,7171-7171[BULt]	((((.((((((.(((((((((.&.))))))))).))))))-))))	CAAGAGGAGACAGGAAGCGGCC&UGUCGUUUUUCGUCUUC-CUUG	3	0.999999999999622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1786_c0_g1_7179_TPlot.pdf
TRINITY_DN1786_c0_g1:7209	si_s80	TRINITY_DN1786_c0_g1	7195	7218	7209	-28.20	-18.98	0.673049645390071	8.5	1-12,7218-7207;15-15,7202-7202;16-21,7200-7195	13-14,7206-7203[AILt];x-x,7201-7201[BULt]	((((((.(....((((((((((((&))))))))))))--..)-))))))	GAGGAACGUGCUAGGAGAGAAAAA&UUUUUCUUUCCU--UUC-UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1786_c0_g1_7209_TPlot.pdf
TRINITY_DN1786_c0_g1:7210	si_s79	TRINITY_DN1786_c0_g1	7193	7219	7210	-26.20	-18.60	0.709923664122137	10.5	2-13,7218-7207;14-19,7200-7195	1-1,7219-7219[UP5];x-x,7206-7201[BULt];20-21,7194-7193[UP3]	..((((((......((((((((((((.&.))))))))))))------))))))..	CCGAGGAACGUGCUAGGAGAGAAAAAG&UUUUUUCUUUCCU------UUCUUCUU	2	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1786_c0_g1_7210_TPlot.pdf
TRINITY_DN1786_c0_g1:7211	si_s78	TRINITY_DN1786_c0_g1	7194	7220	7211	-26.20	-20.30	0.774809160305344	9.5	1-14,7220-7207;15-20,7200-7195	x-x,7206-7201[BULt];21-21,7194-7194[UP3]	.((((((......((((((((((((((&))))))))))))))------)))))).	CGAGGAACGUGCUAGGAGAGAAAAAGA&UUUUUUUCUUUCCU------UUCUUCU	3	0.999999960435398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1786_c0_g1_7211_TPlot.pdf
TRINITY_DN1786_c0_g1:7212	si_s77	TRINITY_DN1786_c0_g1	7195	7221	7212	-25.50	-20.90	0.819607843137255	8.5	1-15,7221-7207;16-21,7200-7195	x-x,7206-7201[BULt]	((((((......(((((((((((((((&)))))))))))))))------))))))	GAGGAACGUGCUAGGAGAGAAAAAGAA&UUUUUUUUCUUUCCU------UUCUUC	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1786_c0_g1_7212_TPlot.pdf
TRINITY_DN1786_c0_g1:7213	si_s76	TRINITY_DN1786_c0_g1	7196	7222	7213	-23.60	-17.60	0.745762711864407	9.5	2-16,7221-7207;17-21,7200-7196	1-1,7222-7222[UP5];x-x,7206-7201[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	AGGAACGUGCUAGGAGAGAAAAAGAAG&AUUUUUUUUCUUUCCU------UUCUU	2	0.999999999935283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1786_c0_g1_7213_TPlot.pdf
TRINITY_DN1786_c0_g1:7215	si_s74	TRINITY_DN1786_c0_g1	7204	7224	7215	-25.00	-16.80	0.672	9.5	4-18,7221-7207	1-3,7224-7222[UP5];19-21,7206-7204[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCUAGGAGAGAAAAAGAAGAA&CUAUUUUUUUUCUUUCCUUUC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1786_c0_g1_7215_TPlot.pdf
TRINITY_DN1786_c0_g1:7216	si_s73	TRINITY_DN1786_c0_g1	7205	7225	7216	-24.00	-16.80	0.7	10.5	5-19,7221-7207	1-4,7225-7222[UP5];20-21,7206-7205[UP3]	..(((((((((((((((....&....)))))))))))))))..	CUAGGAGAGAAAAAGAAGAAG&UCUAUUUUUUUUCUUUCCUUU	2	0.999999999999823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1786_c0_g1_7216_TPlot.pdf
TRINITY_DN1786_c0_g1:7217	si_s72	TRINITY_DN1786_c0_g1	7206	7224	7217	-24.10	-17.50	0.726141078838174	6.5	1-4,7224-7221;7-20,7220-7207	5-6,x-x[BULq];21-21,7206-7206[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	UAGGAGAGAAAAAGA--AGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999999456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1786_c0_g1_7217_TPlot.pdf
TRINITY_DN1786_c0_g1:7218	si_s71	TRINITY_DN1786_c0_g1	7207	7225	7218	-25.70	-19.80	0.770428015564202	5.5	1-5,7225-7221;8-21,7220-7207	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	AGGAGAGAAAAAGA--AGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1786_c0_g1_7218_TPlot.pdf
TRINITY_DN1786_c0_g1:7219	si_s70	TRINITY_DN1786_c0_g1	7208	7226	7219	-25.80	-19.30	0.748062015503876	6.5	2-6,7225-7221;9-21,7220-7208	1-1,7226-7226[UP5];7-8,x-x[BULq]	(((((((((((((--(((((.&.)))))..)))))))))))))	GGAGAGAAAAAGA--AGAAGC&ACUUCUAUUUUUUUUCUUUCC	2	0.994829164283728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1786_c0_g1_7219_TPlot.pdf
TRINITY_DN1786_c0_g1:7220	si_s69	TRINITY_DN1786_c0_g1	7209	7227	7220	-23.40	-16.00	0.683760683760684	8.5	3-7,7225-7221;10-21,7220-7209	1-2,7227-7226[UP5];8-9,x-x[BULq]	((((((((((((--(((((..&..)))))..))))))))))))	GAGAGAAAAAGA--AGAAGCA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1786_c0_g1_7220_TPlot.pdf
TRINITY_DN1786_c0_g1:7792	si_a759	TRINITY_DN1786_c0_g1	7781	7801	7792	-32.60	-22.90	0.702453987730061	9	1-8,7801-7794;11-20,7791-7782	9-10,7793-7792[SIL];21-21,7781-7781[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	CCGAUCAGAGGUACAAGGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN1786_c0_g1_7792_TPlot.pdf
TRINITY_DN1786_c0_g1:7798	si_s896	TRINITY_DN1786_c0_g1	7787	7807	7798	-31.60	-20.60	0.651898734177215	9	3-13,7805-7795;16-20,7792-7788	1-2,7807-7806[UP5];14-15,7794-7793[SIL];21-21,7787-7787[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	AGAGGUACAAGGGAGAGCCGA&UAGGCUUUCUCUUCAAUUUCA	2	0.999922985686345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN1786_c0_g1_7798_TPlot.pdf
TRINITY_DN17874_c0_g1:370	si_a634	TRINITY_DN17874_c0_g1	359	379	370	-26.40	-17.30	0.65530303030303	9	2-7,378-373;10-19,370-361	1-1,379-379[UP5];8-9,372-371[SIL];20-21,360-359[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	GCACUCAAAAGAGGCGAUAUU&UAUGUCGAUUUUUUUGAGUAA	3	0.999999999988439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN17874_c0_g1_370_TPlot.pdf
TRINITY_DN17874_c0_g1:371	si_a633	TRINITY_DN17874_c0_g1	360	380	371	-26.40	-17.30	0.65530303030303	10	3-8,378-373;11-20,370-361	1-2,380-379[UP5];9-10,372-371[SIL];21-21,360-360[UP3]	.((((((((((..((((((..&..))))))..)))))))))).	CACUCAAAAGAGGCGAUAUUA&UUAUGUCGAUUUUUUUGAGUA	4	0.999999999994388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN17874_c0_g1_371_TPlot.pdf
TRINITY_DN17875_c0_g1:352	si_s9	TRINITY_DN17875_c0_g1	341	361	352	-22.90	-15.00	0.655021834061135	14	4-17,358-345	1-3,361-359[UP5];18-21,344-341[UP3]	....((((((((((((((...&...))))))))))))))....	GGAGGUGGUGGUGAUGAGCCU&UUACUUAUUAUUACUAUAUUG	2	0.994632443542017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN17875_c0_g1_352_TPlot.pdf
TRINITY_DN17875_c0_g1:353	si_s8	TRINITY_DN17875_c0_g1	342	362	353	-21.30	-15.00	0.704225352112676	14.5	5-18,358-345	1-4,362-359[UP5];19-21,344-342[UP3]	...((((((((((((((....&....))))))))))))))...	GAGGUGGUGGUGAUGAGCCUG&AUUACUUAUUAUUACUAUAUU	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN17875_c0_g1_353_TPlot.pdf
TRINITY_DN17875_c0_g1:354	si_s7	TRINITY_DN17875_c0_g1	343	363	354	-21.70	-15.00	0.691244239631336	15	6-19,358-345	1-5,363-359[UP5];20-21,344-343[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGGUGGUGGUGAUGAGCCUGU&UAUUACUUAUUAUUACUAUAU	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN17875_c0_g1_354_TPlot.pdf
TRINITY_DN17875_c0_g1:355	si_s6	TRINITY_DN17875_c0_g1	344	364	355	-21.70	-15.00	0.691244239631336	16	7-20,358-345	1-6,364-359[UP5];21-21,344-344[UP3]	.((((((((((((((......&......)))))))))))))).	GGUGGUGGUGAUGAGCCUGUG&AUAUUACUUAUUAUUACUAUA	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN17875_c0_g1_355_TPlot.pdf
TRINITY_DN17875_c0_g1:356	si_s5	TRINITY_DN17875_c0_g1	345	365	356	-21.70	-14.60	0.672811059907834	16.5	8-21,358-345	1-7,365-359[UP5]	((((((((((((((.......&.......))))))))))))))	GUGGUGGUGAUGAGCCUGUGU&UAUAUUACUUAUUAUUACUAU	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN17875_c0_g1_356_TPlot.pdf
TRINITY_DN17877_c0_g1:1601	si_a459	TRINITY_DN17877_c0_g1	1590	1612	1601	-23.20	-15.80	0.681034482758621	9.5	1-8,1612-1605;9-12,1602-1599;14-20,1597-1591	x-x,1604-1603[BULt];13-13,1598-1598[SIL];21-21,1590-1590[UP3]	.(((((((.((((..((((((((&))))))))--)))).))))))).	GUACAUGUCGUAUGGGUAGCAAC&GUUGUUAU--AUAUAAUAUGUAA	2	0.93690066453088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN17877_c0_g1_1601_TPlot.pdf
TRINITY_DN17877_c0_g1:1602	si_a458	TRINITY_DN17877_c0_g1	1591	1613	1602	-23.80	-16.60	0.697478991596639	8	1-9,1613-1605;10-13,1602-1599;15-21,1597-1591	x-x,1604-1603[BULt];14-14,1598-1598[SIL]	(((((((.((((..(((((((((&)))))))))--)))).)))))))	UACAUGUCGUAUGGGUAGCAACA&UGUUGUUAU--AUAUAAUAUGUA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN17877_c0_g1_1602_TPlot.pdf
TRINITY_DN17877_c0_g1:1605	si_a457	TRINITY_DN17877_c0_g1	1592	1614	1605	-23.50	-15.90	0.676595744680851	8	1-10,1614-1605;11-14,1602-1599;16-21,1597-1592	x-x,1604-1603[BULt];15-15,1598-1598[SIL]	((((((.((((..((((((((((&))))))))))--)))).))))))	ACAUGUCGUAUGGGUAGCAACAA&UUGUUGUUAU--AUAUAAUAUGU	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN17877_c0_g1_1605_TPlot.pdf
TRINITY_DN1787_c0_g2:206	si_a494	TRINITY_DN1787_c0_g2	196	215	206	-29.50	-19.30	0.654237288135593	7.5	4-17,212-199;19-21,198-196	1-3,215-213[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	GAA-ACGGAAAACGGCAUUUC&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999999962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN1787_c0_g2_206_TPlot.pdf
TRINITY_DN1787_c0_g2:208	si_a492	TRINITY_DN1787_c0_g2	197	216	208	-30.20	-19.90	0.658940397350993	6.5	2-4,215-213;6-19,212-199	1-1,216-216[UP5];5-5,x-x[BULq];20-21,198-197[UP3]	..((((((((((((((-(((.&.))).))))))))))))))..	AAACGGAAAACGGCAU-UUCA&AGAAUAUGUCGUUUUUCGUCU	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN1787_c0_g2_208_TPlot.pdf
TRINITY_DN17880_c0_g2:445	si_s200	TRINITY_DN17880_c0_g2	434	454	445	-32.80	-21.70	0.661585365853659	8.5	2-7,453-448;10-21,445-434	1-1,454-454[UP5];8-9,447-446[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	CGCAGUUGGUGCCGUCCAAGG&UUUUGGAAUGUACCAGUUGUG	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN17880_c0_g2_445_TPlot.pdf
TRINITY_DN17881_c0_g1:304	si_a177	TRINITY_DN17881_c0_g1	293	314	304	-32.90	-21.50	0.653495440729483	9.5	1-4,314-311;5-10,309-304;12-18,302-296	x-x,310-310[BULt];11-11,303-303[SIL];19-21,295-293[UP3]	...(((((((.((((((.((((&))))-)))))).)))))))...	GUUGGAUAUUUUCUGGGUCGGG&CCCG-UCUAGAUAAUAUCUUUC	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a177_TRINITY_DN17881_c0_g1_304_TPlot.pdf
TRINITY_DN17881_c0_g1:305	si_a176	TRINITY_DN17881_c0_g1	294	315	305	-31.70	-21.70	0.684542586750789	9.5	2-5,314-311;6-11,309-304;13-19,302-296	1-1,315-315[UP5];x-x,310-310[BULt];12-12,303-303[SIL];20-21,295-294[UP3]	..(((((((.((((((.((((.&.))))-)))))).)))))))..	UUGGAUAUUUUCUGGGUCGGGG&ACCCG-UCUAGAUAAUAUCUUU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN17881_c0_g1_305_TPlot.pdf
TRINITY_DN1788_c0_g1:1244	si_a75	TRINITY_DN1788_c0_g1	1233	1253	1244	-21.30	-13.90	0.652582159624413	11	1-13,1253-1241	14-21,1240-1233[UP3]	........(((((((((((((&)))))))))))))........	CACUCUUGGAGGGACAAUUUG&CAAAUUGUUUUUCAUUAUUAA	2	0.999999999791494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1788_c0_g1_1244_TPlot.pdf
TRINITY_DN1788_c0_g1:1245	si_a74	TRINITY_DN1788_c0_g1	1234	1254	1245	-22.20	-15.50	0.698198198198198	10	1-14,1254-1241	15-21,1240-1234[UP3]	.......((((((((((((((&)))))))))))))).......	ACUCUUGGAGGGACAAUUUGA&UCAAAUUGUUUUUCAUUAUUA	2	0.998354591584854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1788_c0_g1_1245_TPlot.pdf
TRINITY_DN1788_c0_g1:1246	si_a73	TRINITY_DN1788_c0_g1	1235	1255	1246	-21.90	-15.90	0.726027397260274	9	1-15,1255-1241	16-21,1240-1235[UP3]	......(((((((((((((((&)))))))))))))))......	CUCUUGGAGGGACAAUUUGAG&UUCAAAUUGUUUUUCAUUAUU	2	0.996211839284778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1788_c0_g1_1246_TPlot.pdf
TRINITY_DN1788_c0_g1:1248	si_a71	TRINITY_DN1788_c0_g1	1237	1257	1248	-23.30	-15.90	0.682403433476395	9.5	3-17,1255-1241	1-2,1257-1256[UP5];18-21,1240-1237[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUUGGAGGGACAAUUUGAGUA&CUUUCAAAUUGUUUUUCAUUA	2	0.999970828515111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1788_c0_g1_1248_TPlot.pdf
TRINITY_DN1788_c0_g1:1249	si_a70	TRINITY_DN1788_c0_g1	1238	1258	1249	-23.90	-15.90	0.665271966527197	10.5	4-18,1255-1241	1-3,1258-1256[UP5];19-21,1240-1238[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUGGAGGGACAAUUUGAGUAC&UCUUUCAAAUUGUUUUUCAUU	2	0.999999621111857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1788_c0_g1_1249_TPlot.pdf
TRINITY_DN1788_c0_g1:1250	si_a69	TRINITY_DN1788_c0_g1	1239	1259	1250	-24.00	-15.90	0.6625	11.5	5-19,1255-1241	1-4,1259-1256[UP5];20-21,1240-1239[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGGAGGGACAAUUUGAGUACU&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1788_c0_g1_1250_TPlot.pdf
TRINITY_DN1788_c0_g1:1251	si_a68	TRINITY_DN1788_c0_g1	1240	1269	1251	-25.40	-18.40	0.724409448818898	20.5	1-6,1269-1264;7-20,1254-1241	x-x,1263-1255[BULt];21-21,1240-1240[UP3]	.((((((((((((((.........((((((&))))))---------)))))))))))))).	GGAGGGACAAUUUGAGUACUGUACAAGAAG&CUUCUU---------UCAAAUUGUUUUUCA	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1788_c0_g1_1251_TPlot.pdf
TRINITY_DN1788_c0_g1:1252	si_a67	TRINITY_DN1788_c0_g1	1241	1270	1252	-27.20	-18.00	0.661764705882353	20.5	2-7,1269-1264;8-21,1254-1241	1-1,1270-1270[UP5];x-x,1263-1255[BULt]	((((((((((((((.........((((((.&.))))))---------))))))))))))))	GAGGGACAAUUUGAGUACUGUACAAGAAGG&GCUUCUU---------UCAAAUUGUUUUUC	2	0.999999868459029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1788_c0_g1_1252_TPlot.pdf
TRINITY_DN17896_c0_g1:42	si_a640	TRINITY_DN17896_c0_g1	32	51	42	-24.10	-16.30	0.676348547717842	7	1-13,51-39;16-19,37-34	14-15,38-38[AILq];20-21,33-32[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	UCUAUGA-GCUCAAAGAGAUC&GAUUUUUUUGAGUAAUAUAUC	1	0.0855584245678664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN17896_c0_g1_42_TPlot.pdf
TRINITY_DN178_c0_g1:1246	si_a794	TRINITY_DN178_c0_g1	1230	1255	1246	-28.60	-18.70	0.653846153846154	11.5	3-14,1253-1242;15-20,1236-1231	1-2,1255-1254[UP5];x-x,1241-1237[BULt];21-21,1230-1230[UP3]	.((((((.....((((((((((((..&..))))))))))))-----)))))).	CUUGGAUCCUAUUGGAAAAUGGAGUA&UUUUCUAUUUUCCA-----AUCCGAA	2	0.999489287954931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN178_c0_g1_1246_TPlot.pdf
TRINITY_DN178_c0_g1:1251	si_a789	TRINITY_DN178_c0_g1	1240	1262	1251	-24.80	-19.30	0.778225806451613	8.5	1-8,1262-1255;9-21,1252-1240	x-x,1254-1253[BULt]	(((((((((((((..((((((((&))))))))--)))))))))))))	AUUGGAAAAUGGAGUAAGGUGGG&UCUAUUUU--UCUAUUUUCCAAU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN178_c0_g1_1251_TPlot.pdf
TRINITY_DN178_c0_g1:1252	si_a788	TRINITY_DN178_c0_g1	1241	1263	1252	-24.80	-18.80	0.758064516129032	9.5	1-9,1263-1255;10-21,1252-1241	x-x,1254-1253[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	UUGGAAAAUGGAGUAAGGUGGGG&UUCUAUUUU--UCUAUUUUCCAA	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN178_c0_g1_1252_TPlot.pdf
TRINITY_DN178_c0_g1:1255	si_a787	TRINITY_DN178_c0_g1	1242	1264	1255	-26.30	-18.10	0.688212927756654	10.5	2-10,1263-1255;11-21,1252-1242	1-1,1264-1264[UP5];x-x,1254-1253[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	UGGAAAAUGGAGUAAGGUGGGGC&CUUCUAUUUU--UCUAUUUUCCA	4	0.999999999117959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN178_c0_g1_1255_TPlot.pdf
TRINITY_DN178_c0_g1:2331	si_s806	TRINITY_DN178_c0_g1	2315	2340	2331	-28.60	-20.70	0.723776223776224	8.5	1-12,2340-2329;13-17,2327-2323;18-21,2318-2315	x-x,2328-2328[BULt];x-x,2322-2319[BULt]	((((....(((((.((((((((((((&))))))))))))-)))))----))))	AAGAAAUUGAAGGUUAACGGAGAUGA&UUAUCUUCGUUA-CCUUU----UCUU	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN178_c0_g1_2331_TPlot.pdf
TRINITY_DN178_c0_g1:2337	si_s800	TRINITY_DN178_c0_g1	2325	2346	2337	-29.70	-20.90	0.703703703703704	6.5	1-1,2346-2346;3-4,2344-2343;6-18,2341-2329;19-21,2327-2325	2-2,2345-2345[SIL];5-5,2342-2342[SIL];x-x,2328-2328[BULt]	(((.(((((((((((((.((.(&).)).)))))))))))))-)))	AGGUUAACGGAGAUGAAUUAGG&CGUAUUUUAUCUUCGUUA-CCU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN178_c0_g1_2337_TPlot.pdf
TRINITY_DN178_c0_g1:2338	si_s799	TRINITY_DN178_c0_g1	2326	2347	2338	-30.00	-21.20	0.706666666666667	6.5	1-2,2347-2346;4-5,2344-2343;7-19,2341-2329;20-21,2327-2326	3-3,2345-2345[SIL];6-6,2342-2342[SIL];x-x,2328-2328[BULt]	((.(((((((((((((.((.((&)).)).)))))))))))))-))	GGUUAACGGAGAUGAAUUAGGA&UCGUAUUUUAUCUUCGUUA-CC	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN178_c0_g1_2338_TPlot.pdf
TRINITY_DN178_c0_g1:2444	si_s72	TRINITY_DN178_c0_g1	2433	2453	2444	-24.10	-15.70	0.651452282157676	7	1-17,2453-2437	18-21,2436-2433[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUAAAAGGGAAAAAAGUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN178_c0_g1_2444_TPlot.pdf
TRINITY_DN178_c0_g1:2447	si_s69	TRINITY_DN178_c0_g1	2436	2456	2447	-23.40	-15.90	0.67948717948718	9	4-20,2453-2437	1-3,2456-2454[UP5];21-21,2436-2436[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGGGAAAAAAGUGGAAAUU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN178_c0_g1_2447_TPlot.pdf
TRINITY_DN178_c0_g1:2448	si_s68	TRINITY_DN178_c0_g1	2437	2457	2448	-23.10	-15.90	0.688311688311688	10	5-21,2453-2437	1-4,2457-2454[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGGGAAAAAAGUGGAAAUUC&CAACUUCUAUUUUUUUUCUUU	2	0.999999998732679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN178_c0_g1_2448_TPlot.pdf
TRINITY_DN178_c0_g1:3004	si_a149	TRINITY_DN178_c0_g1	2990	3013	3004	-29.40	-19.30	0.656462585034014	10	1-14,3013-3000;15-16,2996-2995;18-19,2993-2992	x-x,2999-2997[BULt];17-17,2994-2994[SIL];20-21,2991-2990[UP3]	..((.((...((((((((((((((&))))))))))))))---)).))..	GAUGUCCCUAUUGAAGCAGCGACG&CGUUGUUGUUUUAA---GGUCAAU	2	0.999981821528095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN178_c0_g1_3004_TPlot.pdf
TRINITY_DN178_c0_g1:3005	si_a148	TRINITY_DN178_c0_g1	2991	3014	3005	-30.30	-20.90	0.68976897689769	8.5	1-15,3014-3000;16-17,2996-2995;19-20,2993-2992	x-x,2999-2997[BULt];18-18,2994-2994[SIL];21-21,2991-2991[UP3]	.((.((...(((((((((((((((&)))))))))))))))---)).)).	AUGUCCCUAUUGAAGCAGCGACGA&UCGUUGUUGUUUUAA---GGUCAA	2	0.980657087003412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN178_c0_g1_3005_TPlot.pdf
TRINITY_DN178_c0_g1:3006	si_a147	TRINITY_DN178_c0_g1	2992	3015	3006	-30.40	-20.70	0.680921052631579	8.5	2-16,3014-3000;17-18,2996-2995;20-21,2993-2992	1-1,3015-3015[UP5];x-x,2999-2997[BULt];19-19,2994-2994[SIL]	((.((...(((((((((((((((.&.)))))))))))))))---)).))	UGUCCCUAUUGAAGCAGCGACGAA&AUCGUUGUUGUUUUAA---GGUCA	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN178_c0_g1_3006_TPlot.pdf
TRINITY_DN178_c0_g1:3007	si_a146	TRINITY_DN178_c0_g1	2994	3016	3007	-29.70	-20.00	0.673400673400673	10.5	3-16,3014-3001;17-19,2998-2996	1-2,3016-3015[UP5];x-x,3000-2999[BULt];20-21,2995-2994[UP3]	..(((..((((((((((((((..&..))))))))))))))--)))..	UCCCUAUUGAAGCAGCGACGAAA&AAUCGUUGUUGUUUUA--AGGUC	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN178_c0_g1_3007_TPlot.pdf
TRINITY_DN178_c0_g1:555	si_s83	TRINITY_DN178_c0_g1	544	564	555	-30.90	-21.30	0.689320388349515	6.5	1-6,564-559;9-21,556-544	7-8,558-557[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAGGAAGAAGAAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999999999985466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN178_c0_g1_555_TPlot.pdf
TRINITY_DN178_c0_g1:556	si_s82	TRINITY_DN178_c0_g1	545	565	556	-28.90	-19.20	0.664359861591695	6.5	1-7,565-559;10-21,556-545	8-9,558-557[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAGGAAGAAGAAGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN178_c0_g1_556_TPlot.pdf
TRINITY_DN178_c0_g1:558	si_s89	TRINITY_DN178_c0_g1	546	567	558	-35.30	-24.20	0.685552407932011	4.5	2-15,566-553;17-20,550-547	1-1,567-567[UP5];16-16,552-551[AILt];21-21,546-546[UP3]	.((((..((((((((((((((.&.))))))))))))))-.)))).	AGAGGAAGAAGAAGAAGAAAGU&CCUUUCUUCUUCUUC-GCUUCG	3	0.9999999995108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN178_c0_g1_558_TPlot.pdf
TRINITY_DN178_c0_g1:612	si_a403	TRINITY_DN178_c0_g1	601	621	612	-22.00	-14.40	0.654545454545455	12.5	4-17,618-605	1-3,621-619[UP5];18-21,604-601[UP3]	....((((((((((((((...&...))))))))))))))....	GAAGAUGAACAGGACAGUGAA&AGAAUUGUUUUGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN178_c0_g1_612_TPlot.pdf
TRINITY_DN17902_c0_g1:490	si_s481	TRINITY_DN17902_c0_g1	482	499	490	-23.00	-15.10	0.656521739130435	9	1-10,499-490;14-20,489-483	11-13,x-x[BULq];21-21,482-482[UP3]	.(((((((---((((((((((&))))))))))...))))))).	CGUUUAAG---GUAUGGGAUC&GAUCCUAUAUUUAUUUAAAUA	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN17902_c0_g1_490_TPlot.pdf
TRINITY_DN17929_c0_g1:489	si_a401	TRINITY_DN17929_c0_g1	478	498	489	-22.60	-16.80	0.743362831858407	6	2-17,497-482	1-1,498-498[UP5];18-21,481-478[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGACGAAUAAAACAAUUCUAA&AUAGAAUUGUUUUGUUUAUAU	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN17929_c0_g1_489_TPlot.pdf
TRINITY_DN17929_c0_g1:490	si_a400	TRINITY_DN17929_c0_g1	479	499	490	-22.80	-16.80	0.736842105263158	7	3-18,497-482	1-2,499-498[UP5];19-21,481-479[UP3]	...((((((((((((((((..&..))))))))))))))))...	GACGAAUAAAACAAUUCUAAU&UAUAGAAUUGUUUUGUUUAUA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN17929_c0_g1_490_TPlot.pdf
TRINITY_DN17929_c0_g1:491	si_a399	TRINITY_DN17929_c0_g1	480	500	491	-22.60	-16.80	0.743362831858407	8	4-19,497-482	1-3,500-498[UP5];20-21,481-480[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACGAAUAAAACAAUUCUAAUA&AUAUAGAAUUGUUUUGUUUAU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN17929_c0_g1_491_TPlot.pdf
TRINITY_DN17929_c0_g1:492	si_a398	TRINITY_DN17929_c0_g1	481	501	492	-22.40	-16.80	0.75	9	5-20,497-482	1-4,501-498[UP5];21-21,481-481[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAAUAAAACAAUUCUAAUAG&AAUAUAGAAUUGUUUUGUUUA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN17929_c0_g1_492_TPlot.pdf
TRINITY_DN17929_c0_g1:493	si_a397	TRINITY_DN17929_c0_g1	482	502	493	-24.00	-16.60	0.691666666666667	10	6-21,497-482	1-5,502-498[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAUAAAACAAUUCUAAUAGU&GAAUAUAGAAUUGUUUUGUUU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN17929_c0_g1_493_TPlot.pdf
TRINITY_DN1792_c0_g1:1177	si_s603	TRINITY_DN1792_c0_g1	1166	1186	1177	-27.20	-18.10	0.665441176470588	8.5	1-8,1186-1179;11-14,1176-1173;16-18,1171-1169	9-10,1178-1177[SIL];15-15,1172-1172[SIL];19-21,1168-1166[UP3]	...(((.((((..((((((((&))))))))..)))).)))...	UUCUAACAGAGUGUCGCUUGG&CCAAGCGAAUCUUUUUUAAAU	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN1792_c0_g1_1177_TPlot.pdf
TRINITY_DN1792_c0_g1:1178	si_s602	TRINITY_DN1792_c0_g1	1167	1187	1178	-28.10	-18.30	0.651245551601424	8	1-9,1187-1179;12-15,1176-1173;17-19,1171-1169	10-11,1178-1177[SIL];16-16,1172-1172[SIL];20-21,1168-1167[UP3]	..(((.((((..(((((((((&)))))))))..)))).)))..	UCUAACAGAGUGUCGCUUGGG&UCCAAGCGAAUCUUUUUUAAA	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN1792_c0_g1_1178_TPlot.pdf
TRINITY_DN1792_c0_g1:1179	si_s601	TRINITY_DN1792_c0_g1	1168	1188	1179	-28.30	-19.90	0.703180212014134	7.5	1-10,1188-1179;13-16,1176-1173;18-20,1171-1169	11-12,1178-1177[SIL];17-17,1172-1172[SIL];21-21,1168-1168[UP3]	.(((.((((..((((((((((&))))))))))..)))).))).	CUAACAGAGUGUCGCUUGGGU&AUCCAAGCGAAUCUUUUUUAA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN1792_c0_g1_1179_TPlot.pdf
TRINITY_DN1792_c0_g1:1180	si_s600	TRINITY_DN1792_c0_g1	1169	1189	1180	-28.20	-19.90	0.705673758865248	6.5	2-11,1188-1179;14-17,1176-1173;19-21,1171-1169	1-1,1189-1189[UP5];12-13,1178-1177[SIL];18-18,1172-1172[SIL]	(((.((((..((((((((((.&.))))))))))..)))).)))	UAACAGAGUGUCGCUUGGGUG&AAUCCAAGCGAAUCUUUUUUA	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN1792_c0_g1_1180_TPlot.pdf
TRINITY_DN1792_c0_g1:1181	si_s599	TRINITY_DN1792_c0_g1	1170	1190	1181	-27.80	-19.50	0.701438848920863	9.5	3-12,1188-1179;15-18,1176-1173	1-2,1190-1189[UP5];13-14,1178-1177[SIL];19-21,1172-1170[UP3]	...((((..((((((((((..&..))))))))))..))))...	AACAGAGUGUCGCUUGGGUGA&AAAUCCAAGCGAAUCUUUUUU	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN1792_c0_g1_1181_TPlot.pdf
TRINITY_DN1792_c0_g1:1182	si_s598	TRINITY_DN1792_c0_g1	1171	1191	1182	-28.20	-19.50	0.691489361702128	10.5	4-13,1188-1179;16-19,1176-1173	1-3,1191-1189[UP5];14-15,1178-1177[SIL];20-21,1172-1171[UP3]	..((((..((((((((((...&...))))))))))..))))..	ACAGAGUGUCGCUUGGGUGAC&UAAAUCCAAGCGAAUCUUUUU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN1792_c0_g1_1182_TPlot.pdf
TRINITY_DN1792_c0_g1:1183	si_s597	TRINITY_DN1792_c0_g1	1172	1192	1183	-28.40	-19.50	0.686619718309859	11.5	5-14,1188-1179;17-20,1176-1173	1-4,1192-1189[UP5];15-16,1178-1177[SIL];21-21,1172-1172[UP3]	.((((..((((((((((....&....))))))))))..)))).	CAGAGUGUCGCUUGGGUGACA&AUAAAUCCAAGCGAAUCUUUU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN1792_c0_g1_1183_TPlot.pdf
TRINITY_DN1792_c0_g1:1184	si_s617	TRINITY_DN1792_c0_g1	1172	1193	1184	-28.30	-19.20	0.678445229681979	13	6-16,1188-1178;17-20,1176-1173	1-5,1193-1189[UP5];x-x,1177-1177[BULt];21-21,1172-1172[UP3]	.((((.(((((((((((.....&.....)))))))))))-)))).	CAGAGUGUCGCUUGGGUGACAU&UUUAAAUCCAAGCGAU-CUUUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN1792_c0_g1_1184_TPlot.pdf
TRINITY_DN1792_c0_g1:1185	si_s616	TRINITY_DN1792_c0_g1	1173	1194	1185	-28.30	-19.20	0.678445229681979	14	7-17,1188-1178;18-21,1176-1173	1-6,1194-1189[UP5];x-x,1177-1177[BULt]	((((.(((((((((((......&......)))))))))))-))))	AGAGUGUCGCUUGGGUGACAUG&UUUUAAAUCCAAGCGAU-CUUU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN1792_c0_g1_1185_TPlot.pdf
TRINITY_DN1792_c0_g1:1186	si_s615	TRINITY_DN1792_c0_g1	1174	1195	1186	-28.30	-18.50	0.653710247349823	16	8-18,1188-1178;19-21,1176-1174	1-7,1195-1189[UP5];x-x,1177-1177[BULt]	(((.(((((((((((.......&.......)))))))))))-)))	GAGUGUCGCUUGGGUGACAUGA&UUUUUAAAUCCAAGCGAU-CUU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s615_TRINITY_DN1792_c0_g1_1186_TPlot.pdf
TRINITY_DN17934_c0_g1:1449	si_s808	TRINITY_DN17934_c0_g1	1437	1458	1449	-28.60	-20.10	0.702797202797203	9.5	2-15,1457-1444;16-17,1442-1441	1-1,1458-1458[UP5];x-x,1443-1443[BULt];18-21,1440-1437[UP3]	....((.((((((((((((((.&.))))))))))))))-))....	UGAUGACGAAGGUGGCGGAGAA&AUCUUCGUUACCUUU-UCUUAA	4	0.999934925752249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN17934_c0_g1_1449_TPlot.pdf
TRINITY_DN17934_c0_g1:1452	si_s805	TRINITY_DN17934_c0_g1	1440	1461	1452	-28.60	-20.10	0.702797202797203	12.5	5-18,1457-1444;19-20,1442-1441	1-4,1461-1458[UP5];x-x,1443-1443[BULt];21-21,1440-1440[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	UGACGAAGGUGGCGGAGAAGAU&UUUAUCUUCGUUACCUUU-UCU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN17934_c0_g1_1452_TPlot.pdf
TRINITY_DN1793_c0_g1:509	si_a717	TRINITY_DN1793_c0_g1	499	518	509	-32.40	-23.20	0.716049382716049	12	7-12,512-507;14-21,506-499	1-6,518-513[UP5];13-13,x-x[BULq]	((((((((-((((((......&......)))))).))))))))	UGCCCGAG-AACGAUGAUGAC&AAAAUAAUCGUUACUCGGGCA	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN1793_c0_g1_509_TPlot.pdf
TRINITY_DN1795_c0_g1:3647	si_s418	TRINITY_DN1795_c0_g1	3635	3656	3647	-26.70	-18.30	0.685393258426966	8.5	3-11,3654-3646;13-21,3643-3635	1-2,3656-3655[UP5];12-12,3645-3644[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	AUUGUUGUAGGGGAAUAUGUGA&CGACAUAUUCU-AUAUAACAAU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s418_TRINITY_DN1795_c0_g1_3647_TPlot.pdf
TRINITY_DN17966_c0_g1:610	si_a79	TRINITY_DN17966_c0_g1	599	619	610	-22.20	-15.40	0.693693693693694	9.5	1-15,619-605	16-21,604-599[UP3]	......(((((((((((((((&)))))))))))))))......	GAUUUGAGUGAUGAGAAGCAA&UUGUUUUUCAUUAUUAAGAAA	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN17966_c0_g1_610_TPlot.pdf
TRINITY_DN1796_c0_g1:117	si_s447	TRINITY_DN1796_c0_g1	106	131	117	-21.10	-13.80	0.654028436018957	15.5	3-9,129-123;10-21,117-106	1-2,131-130[UP5];x-x,122-118[BULt]	((((((((((((.....(((((((..&..)))))))-----))))))))))))	AUGAUUGUUGUUUGUUAAUAUGUGCU&AUUAUAUAU-----AACAACAAUUAU	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN1796_c0_g1_117_TPlot.pdf
TRINITY_DN1796_c0_g1:3861	si_a77	TRINITY_DN1796_c0_g1	3849	3874	3861	-22.20	-14.50	0.653153153153153	11.5	1-7,3874-3868;8-10,3863-3861;11-21,3859-3849	x-x,3867-3864[BULt];x-x,3860-3860[BULt]	(((((((((((.(((....(((((((&)))))))----)))-)))))))))))	UCUUGAUAAUGUAAAAUUUGACAAUU&AAUUGUU----UUU-CAUUAUUAAGA	4	0.999999999099562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN1796_c0_g1_3861_TPlot.pdf
TRINITY_DN1796_c0_g1:4132	si_s118	TRINITY_DN1796_c0_g1	4121	4141	4132	-26.40	-19.30	0.731060606060606	5.5	1-10,4141-4132;12-20,4130-4122	11-11,4131-4131[SIL];21-21,4121-4121[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	UGACUCUUCUUUUUUUUUGUU&AAUAGAAAAAUAGAAGAGUUG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN1796_c0_g1_4132_TPlot.pdf
TRINITY_DN1796_c0_g1:4644	si_a390	TRINITY_DN1796_c0_g1	4636	4653	4644	-24.80	-17.00	0.685483870967742	8	1-10,4653-4644;14-21,4643-4636	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	GCGAUUCU---UUCUUGGUUC&GAAUUAAGAAUAUAGAAUUGU	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a390_TRINITY_DN1796_c0_g1_4644_TPlot.pdf
TRINITY_DN1796_c0_g2:1223	si_s26	TRINITY_DN1796_c0_g2	1210	1232	1223	-26.70	-17.60	0.659176029962547	8.5	2-10,1231-1223;12-21,1219-1210	1-1,1232-1232[UP5];11-11,1222-1220[AILt]	((((((((((...(((((((((.&.)))))))))--.))))))))))	AAAGAUUUGGAAAUGCAAUUAAG&AUUGAUUGCA--ACUAAAUCUUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN1796_c0_g2_1223_TPlot.pdf
TRINITY_DN1796_c0_g2:671	si_a220	TRINITY_DN1796_c0_g2	660	680	671	-25.10	-19.70	0.784860557768924	7.5	3-10,678-671;12-21,669-660	1-2,680-679[UP5];11-11,670-670[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UGUGGAAGCGCGAGUUUAACA&AAUUAAACUCAUGUUUCUAUA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN1796_c0_g2_671_TPlot.pdf
TRINITY_DN1796_c0_g2:672	si_a219	TRINITY_DN1796_c0_g2	661	681	672	-25.10	-18.50	0.737051792828685	9	4-11,678-671;13-21,669-661	1-3,681-679[UP5];12-12,670-670[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GUGGAAGCGCGAGUUUAACAA&UAAUUAAACUCAUGUUUCUAU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN1796_c0_g2_672_TPlot.pdf
TRINITY_DN1797_c0_g1:748	si_a75	TRINITY_DN1797_c0_g1	737	757	748	-21.30	-15.40	0.723004694835681	7.5	1-6,757-752;8-8,750-750;10-20,748-738	7-7,751-751[SIL];9-9,749-749[SIL];21-21,737-737[UP3]	.(((((((((((.(.((((((&)))))).).))))))))))).	GUAAUGAUGAGAUGGAAUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1797_c0_g1_748_TPlot.pdf
TRINITY_DN1797_c0_g1:749	si_a74	TRINITY_DN1797_c0_g1	738	758	749	-22.20	-16.80	0.756756756756757	6.5	1-7,758-752;9-9,750-750;11-21,748-738	8-8,751-751[SIL];10-10,749-749[SIL]	(((((((((((.(.(((((((&))))))).).)))))))))))	UAAUGAUGAGAUGGAAUUUGA&UCAAAUUGUUUUUCAUUAUUA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1797_c0_g1_749_TPlot.pdf
TRINITY_DN1797_c0_g1:751	si_a545	TRINITY_DN1797_c0_g1	740	762	751	-28.10	-19.00	0.676156583629893	8	2-8,761-755;9-16,752-745;18-21,743-740	1-1,762-762[UP5];x-x,754-753[BULt];17-17,744-744[SIL]	((((.((((((((..(((((((.&.)))))))--)))))))).))))	AUGAUGAGAUGGAAUUUGAACCU&CGGUUCAA--UCUAUUUCUUUAU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN1797_c0_g1_751_TPlot.pdf
TRINITY_DN17984_c0_g1:5281	si_s629	TRINITY_DN17984_c0_g1	5268	5290	5281	-34.60	-23.50	0.679190751445087	6	1-10,5290-5281;12-12,5279-5279;14-16,5277-5275;17-21,5272-5268	11-11,5280-5280[SIL];13-13,5278-5278[SIL];x-x,5274-5273[BULt]	(((((..(((.(.((((((((((&)))))))))).).)))--)))))	CAAACUCGCCAAGGAGAAGAUCG&CGAUCUUUUCGUAGGC--GUUUG	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN17984_c0_g1_5281_TPlot.pdf
TRINITY_DN17984_c0_g1:927	si_a302	TRINITY_DN17984_c0_g1	915	936	927	-28.20	-18.40	0.652482269503546	13.5	6-16,931-921;17-20,919-916	1-5,936-932[UP5];x-x,920-920[BULt];21-21,915-915[UP3]	.((((.(((((((((((.....&.....)))))))))))-)))).	AGAAUCCCAAGCGAGUUCGAUC&AAAAAGAUUCGCUUGG-AUUUA	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN17984_c0_g1_927_TPlot.pdf
TRINITY_DN17987_c0_g1:196	si_s76	TRINITY_DN17987_c0_g1	185	205	196	-23.60	-16.90	0.716101694915254	7	1-15,205-191	16-21,190-185[UP3]	......(((((((((((((((&)))))))))))))))......	CCUAUUGGAAAGAAAGAAAAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN17987_c0_g1_196_TPlot.pdf
TRINITY_DN17987_c0_g1:197	si_s75	TRINITY_DN17987_c0_g1	186	206	197	-24.00	-18.00	0.75	6	1-16,206-191	17-21,190-186[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUAUUGGAAAGAAAGAAAAUA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999974538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN17987_c0_g1_197_TPlot.pdf
TRINITY_DN17987_c0_g1:202	si_s70	TRINITY_DN17987_c0_g1	191	211	202	-25.80	-17.80	0.689922480620155	10	6-21,206-191	1-5,211-207[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAAAGAAAGAAAAUAUAGCC&ACUUCUAUUUUUUUUCUUUCC	2	0.999999998748355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN17987_c0_g1_202_TPlot.pdf
TRINITY_DN17988_c0_g1:157	si_s69	TRINITY_DN17988_c0_g1	146	165	157	-23.40	-15.80	0.675213675213675	5.5	2-6,164-160;8-20,159-147	1-1,165-165[UP5];7-7,x-x[BULq];21-21,146-146[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	AAAAGGAAAAAGAU-GAAGUA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN17988_c0_g1_157_TPlot.pdf
TRINITY_DN17988_c0_g1:158	si_s68	TRINITY_DN17988_c0_g1	147	166	158	-23.10	-15.80	0.683982683982684	6.5	3-7,164-160;9-21,159-147	1-2,166-165[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	AAAGGAAAAAGAU-GAAGUAG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN17988_c0_g1_158_TPlot.pdf
TRINITY_DN17988_c0_g1:159	si_s67	TRINITY_DN17988_c0_g1	148	168	159	-25.60	-17.30	0.67578125	7.5	1-2,168-167;4-8,164-160;10-21,159-148	3-3,166-165[AILt];9-9,x-x[BULq]	((((((((((((-(((((..((&))-.))))).))))))))))))	AAGGAAAAAGAU-GAAGUAGGC&GC-AACUUCUAUUUUUUUUCUU	4	0.99999999970464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN17988_c0_g1_159_TPlot.pdf
TRINITY_DN17991_c0_g1:367	si_a68	TRINITY_DN17991_c0_g1	356	375	367	-25.40	-18.02	0.709448818897638	9	1-9,375-367;14-20,363-357	10-13,366-364[AILq];21-21,356-356[UP3]	.(((((((...-(((((((((&)))))))))....))))))).	AGAAGAGCCAG-UGAAAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN17991_c0_g1_367_TPlot.pdf
TRINITY_DN17991_c0_g1:370	si_s78	TRINITY_DN17991_c0_g1	356	379	370	-26.20	-18.80	0.717557251908397	6.5	1-12,379-368;13-14,366-365;15-21,362-356	x-x,367-367[BULt];x-x,364-363[BULt]	(((((((..((.((((((((((((&))))))))))))-))--)))))))	AGAAGAGCCAGUGAAAGAAGAAGA&UUUUUUUCUUUC-CU--UUCUUCU	2	0.999999999997154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN17991_c0_g1_370_TPlot.pdf
TRINITY_DN17992_c2_g1:21	si_s774	TRINITY_DN17992_c2_g1	3	30	21	-24.70	-16.50	0.668016194331984	16	1-10,30-21;11-20,13-4	x-x,20-14[BULt];21-21,3-3[UP3]	.((((((((((.......((((((((((&))))))))))-------)))))))))).	AUUUUAUAGCAAGUUAACAUAGUAGUUA&UAAUUACUAU-------UGCUAUAAAAC	0	0.112254959265473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN17992_c2_g1_21_TPlot.pdf
TRINITY_DN1799_c0_g1:1243	si_a454	TRINITY_DN1799_c0_g1	1232	1252	1243	-21.30	-14.00	0.657276995305164	12.5	4-18,1249-1235	1-3,1252-1250[UP5];19-21,1234-1232[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCGUAUGUAUGAUAGCAGCAU&UAAUUGUUGUUAUAUAUAAUA	4	0.999999967315661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN1799_c0_g1_1243_TPlot.pdf
TRINITY_DN179_c0_g1:2015	si_s485	TRINITY_DN179_c0_g1	2004	2024	2015	-18.10	-11.90	0.657458563535912	10.5	2-16,2023-2009	1-1,2024-2024[UP5];17-21,2008-2004[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACGGAGUUUGAAUAGGUGUAA&CUAUAUUUAUUUAAAUAUAAA	2	0.999621165911964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN179_c0_g1_2015_TPlot.pdf
TRINITY_DN179_c0_g1:262	si_a709	TRINITY_DN179_c0_g1	249	271	262	-26.60	-17.38	0.653383458646617	9	3-13,269-259;16-20,254-250	1-2,271-270[UP5];14-15,258-255[AILt];21-21,249-249[UP3]	.(((((....(((((((((((..&..)))))))))))--..))))).	AAACGAAUAGAUUUUGGGAUGGA&UACAUUCCAAAAU--AAUCGUUA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN179_c0_g1_262_TPlot.pdf
TRINITY_DN179_c0_g1:686	si_s487	TRINITY_DN179_c0_g1	675	695	686	-18.40	-12.10	0.657608695652174	9	1-16,695-680	17-21,679-675[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUGAAAUAUUUAGAUGGGUAU&AUAUUUAUUUAAAUAUAAACA	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN179_c0_g1_686_TPlot.pdf
TRINITY_DN179_c0_g1:687	si_s486	TRINITY_DN179_c0_g1	676	696	687	-18.10	-12.60	0.696132596685083	8.5	1-17,696-680	18-21,679-676[UP3]	....(((((((((((((((((&)))))))))))))))))....	UGAAAUAUUUAGAUGGGUAUG&UAUAUUUAUUUAAAUAUAAAC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN179_c0_g1_687_TPlot.pdf
TRINITY_DN179_c0_g1:688	si_s485	TRINITY_DN179_c0_g1	677	697	688	-18.10	-13.30	0.734806629834254	9	2-18,696-680	1-1,697-697[UP5];19-21,679-677[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAAAUAUUUAGAUGGGUAUGA&CUAUAUUUAUUUAAAUAUAAA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN179_c0_g1_688_TPlot.pdf
TRINITY_DN179_c0_g1:880	si_s93	TRINITY_DN179_c0_g1	865	889	880	-34.80	-23.40	0.672413793103448	13.5	1-11,889-879;12-17,874-869	x-x,878-875[BULt];18-21,868-865[UP3]	....((((((....(((((((((((&)))))))))))----))))))....	ACUACGAGGCAAUCGAAGAAGAGGA&UCUUCUUCUUC----GCUUCGGAUU	2	0.999997518522328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN179_c0_g1_880_TPlot.pdf
TRINITY_DN179_c0_g1:881	si_s92	TRINITY_DN179_c0_g1	866	890	881	-34.90	-23.80	0.681948424068768	13	1-12,890-879;13-18,874-869	x-x,878-875[BULt];19-21,868-866[UP3]	...((((((....((((((((((((&))))))))))))----))))))...	CUACGAGGCAAUCGAAGAAGAGGAG&UUCUUCUUCUUC----GCUUCGGAU	3	0.999999990408622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN179_c0_g1_881_TPlot.pdf
TRINITY_DN179_c0_g1:882	si_s91	TRINITY_DN179_c0_g1	867	891	882	-34.70	-24.20	0.697406340057637	9.5	2-13,890-879;14-19,874-869	1-1,891-891[UP5];x-x,878-875[BULt];20-21,868-867[UP3]	..((((((....((((((((((((.&.))))))))))))----))))))..	UACGAGGCAAUCGAAGAAGAGGAGG&UUUCUUCUUCUUC----GCUUCGGA	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN179_c0_g1_882_TPlot.pdf
TRINITY_DN179_c0_g1:883	si_s90	TRINITY_DN179_c0_g1	868	892	883	-35.30	-24.70	0.69971671388102	9.5	2-14,891-879;15-20,874-869	1-1,892-892[UP5];x-x,878-875[BULt];21-21,868-868[UP3]	.((((((....(((((((((((((.&.)))))))))))))----)))))).	ACGAGGCAAUCGAAGAAGAGGAGGA&CUUUCUUCUUCUUC----GCUUCGG	2	0.999818223926229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN179_c0_g1_883_TPlot.pdf
TRINITY_DN179_c0_g1:884	si_s89	TRINITY_DN179_c0_g1	869	893	884	-35.30	-24.20	0.685552407932011	10.5	3-15,891-879;16-21,874-869	1-2,893-892[UP5];x-x,878-875[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	CGAGGCAAUCGAAGAAGAGGAGGAU&CCUUUCUUCUUCUUC----GCUUCG	2	0.999997941120329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN179_c0_g1_884_TPlot.pdf
TRINITY_DN179_c0_g1:885	si_s88	TRINITY_DN179_c0_g1	870	892	885	-34.80	-22.70	0.652298850574713	9.5	1-3,892-890;6-16,889-879;17-21,874-870	4-5,x-x[BULq];x-x,878-875[BULt]	(((((....(((((((((((--(((&)))..)))))))))))----)))))	GAGGCAAUCGAAGAAGAGGA--GGA&UCCUUUCUUCUUCUUC----GCUUC	2	0.99999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN179_c0_g1_885_TPlot.pdf
TRINITY_DN179_c0_g1:887	si_s810	TRINITY_DN179_c0_g1	876	897	887	-27.90	-18.80	0.673835125448029	11	1-7,897-891;9-17,888-880	8-8,890-889[AILt];18-21,879-876[UP3]	....(((((((((..(((((((&)))))))-.)))))))))....	AUCGAAGAAGAGGAGGAUGAAG&CUUCGUU-ACCUUUUCUUAAUA	2	0.999903646668128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN179_c0_g1_887_TPlot.pdf
TRINITY_DN179_c0_g1:888	si_s809	TRINITY_DN179_c0_g1	877	898	888	-28.50	-20.20	0.708771929824561	9.5	1-8,898-891;10-18,888-880	9-9,890-889[AILt];19-21,879-877[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	UCGAAGAAGAGGAGGAUGAAGA&UCUUCGUU-ACCUUUUCUUAAU	2	0.988242631555895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN179_c0_g1_888_TPlot.pdf
TRINITY_DN179_c0_g1:889	si_s808	TRINITY_DN179_c0_g1	878	899	889	-28.60	-20.20	0.706293706293706	9.5	2-9,898-891;11-19,888-880	1-1,899-899[UP5];10-10,890-889[AILt];20-21,879-878[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	CGAAGAAGAGGAGGAUGAAGAC&AUCUUCGUU-ACCUUUUCUUAA	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN179_c0_g1_889_TPlot.pdf
TRINITY_DN179_c0_g1:890	si_s81	TRINITY_DN179_c0_g1	878	898	890	-28.90	-19.50	0.674740484429066	9	1-5,898-894;8-12,892-888;13-20,886-879	6-7,893-893[AILq];x-x,887-887[BULt];21-21,878-878[UP3]	.((((((((.(((((.-(((((&)))))..)))))-)))))))).	CGAAGAAGAGGAGGAU-GAAGA&UUUUCUUUCCUU-UCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN179_c0_g1_890_TPlot.pdf
TRINITY_DN179_c0_g1:891	si_s807	TRINITY_DN179_c0_g1	879	900	891	-28.90	-20.20	0.698961937716263	10.5	3-10,898-891;12-20,888-880	1-2,900-899[UP5];11-11,890-889[AILt];21-21,879-879[UP3]	.(((((((((..((((((((..&..))))))))-.))))))))).	GAAGAAGAGGAGGAUGAAGACG&UAUCUUCGUU-ACCUUUUCUUA	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN179_c0_g1_891_TPlot.pdf
TRINITY_DN179_c0_g1:892	si_s806	TRINITY_DN179_c0_g1	880	901	892	-28.60	-19.80	0.692307692307692	11.5	4-11,898-891;13-21,888-880	1-3,901-899[UP5];12-12,890-889[AILt]	(((((((((..((((((((...&...))))))))-.)))))))))	AAGAAGAGGAGGAUGAAGACGG&UUAUCUUCGUU-ACCUUUUCUU	2	0.999729288865422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN179_c0_g1_892_TPlot.pdf
TRINITY_DN179_c0_g1:905	si_s805	TRINITY_DN179_c0_g1	893	914	905	-28.60	-19.20	0.671328671328671	8	1-10,914-905;12-15,903-900;16-20,898-894	11-11,904-904[SIL];x-x,899-899[BULt];21-21,893-893[UP3]	.(((((.((((.((((((((((&)))))))))).))))-))))).	UGAAGACGGUAUUGAGGAUGAG&UUUAUCUUCGUUACC-UUUUCU	2	0.99999648392122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN179_c0_g1_905_TPlot.pdf
TRINITY_DN179_c0_g1:906	si_s804	TRINITY_DN179_c0_g1	894	915	906	-27.90	-19.20	0.688172043010753	8.5	2-11,914-905;13-16,903-900;17-21,898-894	1-1,915-915[UP5];12-12,904-904[SIL];x-x,899-899[BULt]	(((((.((((.((((((((((.&.)))))))))).))))-)))))	GAAGACGGUAUUGAGGAUGAGG&UUUUAUCUUCGUUACC-UUUUC	3	0.999999087914908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN179_c0_g1_906_TPlot.pdf
TRINITY_DN179_c0_g1:914	si_s898	TRINITY_DN179_c0_g1	903	926	914	-30.70	-20.00	0.651465798045603	9.5	1-5,926-922;6-13,918-911;15-21,909-903	x-x,921-919[BULt];14-14,910-910[SIL]	(((((((.((((((((...(((((&)))))---)))))))).)))))))	AUUGAGGAUGAGGAGAUCGAAGCU&GGCUU---UCUCUUCAAUUUCAAU	3	0.999999999638915	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN179_c0_g1_914_TPlot.pdf
TRINITY_DN17_c0_g2:1830	si_a350	TRINITY_DN17_c0_g2	1819	1839	1830	-20.30	-14.30	0.704433497536946	11	5-17,1835-1823;19-21,1821-1819	1-4,1839-1836[UP5];18-18,1822-1822[SIL]	(((.(((((((((((((....&....))))))))))))).)))	UCGUGAUAGAGUUGAUAAGUU&AAAAUAUUAAUUCUAUUUUGA	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN17_c0_g2_1830_TPlot.pdf
TRINITY_DN17_c0_g2:188	si_a512	TRINITY_DN17_c0_g2	174	198	188	-37.80	-24.70	0.653439153439153	6	1-5,198-194;6-13,192-185;14-21,181-174	x-x,193-193[BULt];x-x,184-182[BULt]	((((((((...((((((((.(((((&)))))-))))))))---))))))))	UCUGCUUUUUCACAUUCCAUAGGAA&UUCCU-UGGAAUGU---AAGGCGGA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN17_c0_g2_188_TPlot.pdf
TRINITY_DN17_c1_g1:360	si_s11	TRINITY_DN17_c1_g1	349	369	360	-23.60	-15.50	0.656779661016949	8	1-4,369-366;7-7,363-363;9-20,361-350	5-6,365-364[SIL];8-8,362-362[SIL];21-21,349-349[UP3]	.((((((((((((.(..((((&))))..).)))))))))))).	CUCAAUGUGGUAAAAUGAAGU&ACUUAUUAUUACUAUAUUGAU	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN17_c1_g1_360_TPlot.pdf
TRINITY_DN17_c1_g1:361	si_s10	TRINITY_DN17_c1_g1	350	370	361	-23.80	-16.20	0.680672268907563	7.5	1-5,370-366;8-8,363-363;10-21,361-350	6-7,365-364[SIL];9-9,362-362[SIL]	((((((((((((.(..(((((&)))))..).))))))))))))	UCAAUGUGGUAAAAUGAAGUG&UACUUAUUAUUACUAUAUUGA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN17_c1_g1_361_TPlot.pdf
TRINITY_DN17_c1_g1:762	si_a408	TRINITY_DN17_c1_g1	751	771	762	-20.10	-13.10	0.651741293532338	7	1-6,771-766;9-20,763-752	7-8,765-764[SIL];21-21,751-751[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	GAUUUAAAUAUGAUAAAAAUA&UGUUUUGUUUAUAUUUAAAUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN17_c1_g1_762_TPlot.pdf
TRINITY_DN17_c1_g1:763	si_a407	TRINITY_DN17_c1_g1	752	772	763	-19.80	-13.60	0.686868686868687	6	1-7,772-766;10-21,763-752	8-9,765-764[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AUUUAAAUAUGAUAAAAAUAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999998727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN17_c1_g1_763_TPlot.pdf
TRINITY_DN17_c1_g1:882	si_a455	TRINITY_DN17_c1_g1	872	891	882	-21.10	-14.10	0.66824644549763	7	2-12,890-880;14-21,879-872	1-1,891-891[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	GUAUUAUG-AUGAUGACGAUG&AAUUGUUGUUAUAUAUAAUAU	3	0.999999924378671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN17_c1_g1_882_TPlot.pdf
TRINITY_DN18004_c0_g1:158	si_a143	TRINITY_DN18004_c0_g1	147	168	158	-25.10	-18.40	0.733067729083665	6	1-6,168-163;7-18,161-150	x-x,162-162[BULt];19-21,149-147[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CCAAAAACAACAACGAAUUGAU&AUUAAU-CGUUGUUGUUUUAAG	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN18004_c0_g1_158_TPlot.pdf
TRINITY_DN18004_c0_g1:159	si_a142	TRINITY_DN18004_c0_g1	148	169	159	-23.50	-18.70	0.795744680851064	6	2-7,168-163;8-19,161-150	1-1,169-169[UP5];x-x,162-162[BULt];20-21,149-148[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	CAAAAACAACAACGAAUUGAUG&AAUUAAU-CGUUGUUGUUUUAA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN18004_c0_g1_159_TPlot.pdf
TRINITY_DN1800_c1_g1:211	si_a326	TRINITY_DN1800_c1_g1	199	220	211	-26.20	-18.30	0.698473282442748	9	3-11,218-210;13-21,207-199	1-2,220-219[UP5];12-12,209-208[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	GGCGAGGAAACAAAAAAGUCCG&AUGAUUUUUUU-AUUCCUUGUC	1	0.113074940396356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN1800_c1_g1_211_TPlot.pdf
TRINITY_DN18012_c0_g1:274	si_s762	TRINITY_DN18012_c0_g1	264	283	274	-26.30	-17.20	0.653992395437262	3.5	1-8,283-276;10-16,274-268;18-21,267-264	9-9,275-275[SIL];17-17,x-x[BULq]	((((-(((((((.((((((((&)))))))).))))))).))))	UAGU-GUUAAUCUUUGUUGUU&AACAACAACGAUUAAUUACUA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s762_TRINITY_DN18012_c0_g1_274_TPlot.pdf
TRINITY_DN18019_c0_g2:48	si_s296	TRINITY_DN18019_c0_g2	37	57	48	-31.60	-21.40	0.677215189873418	6.5	1-9,57-49;11-20,47-38	10-10,48-48[SIL];21-21,37-37[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UUUUUCGCAAUAUCAGUUGAU&GUCGAUUGGAAUUGCGAAAAU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN18019_c0_g2_48_TPlot.pdf
TRINITY_DN1801_c2_g1:1100	si_s79	TRINITY_DN1801_c2_g1	1085	1109	1100	-26.20	-17.90	0.683206106870229	7	2-10,1108-1100;11-14,1098-1095;15-21,1091-1085	1-1,1109-1109[UP5];x-x,1099-1099[BULt];x-x,1094-1092[BULt]	(((((((...((((.(((((((((.&.)))))))))-))))---)))))))	AAGAAGAGUAAAGGCAAAGAAAGAU&UUUUUUCUUU-CCUU---UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1801_c2_g1_1100_TPlot.pdf
TRINITY_DN1801_c2_g1:1117	si_s76	TRINITY_DN1801_c2_g1	1105	1126	1117	-23.60	-17.50	0.741525423728813	3	1-14,1126-1113;15-16,1111-1110;18-21,1108-1105	x-x,1112-1112[BULt];17-17,1109-1109[SIL]	((((.((.((((((((((((((&))))))))))))))-)).))))	AAGAUAGUGAAAGGAAAAAAAU&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1801_c2_g1_1117_TPlot.pdf
TRINITY_DN1801_c2_g1:1119	si_s74	TRINITY_DN1801_c2_g1	1107	1128	1119	-25.00	-19.80	0.792	3	1-16,1128-1113;17-18,1111-1110;20-21,1108-1107	x-x,1112-1112[BULt];19-19,1109-1109[SIL]	((.((.((((((((((((((((&))))))))))))))))-)).))	GAUAGUGAAAGGAAAAAAAUAG&CUAUUUUUUUUCUUUC-CUUUC	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1801_c2_g1_1119_TPlot.pdf
TRINITY_DN1801_c2_g1:1120	si_s73	TRINITY_DN1801_c2_g1	1108	1129	1120	-24.00	-18.00	0.75	5	2-17,1128-1113;18-19,1111-1110	1-1,1129-1129[UP5];x-x,1112-1112[BULt];20-21,1109-1108[UP3]	..((.((((((((((((((((.&.))))))))))))))))-))..	AUAGUGAAAGGAAAAAAAUAGG&UCUAUUUUUUUUCUUUC-CUUU	4	0.999999994228466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1801_c2_g1_1120_TPlot.pdf
TRINITY_DN1801_c2_g1:1123	si_s70	TRINITY_DN1801_c2_g1	1112	1132	1123	-25.80	-18.70	0.724806201550388	5.5	3-20,1130-1113	1-2,1132-1131[UP5];21-21,1112-1112[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UGAAAGGAAAAAAAUAGGACA&ACUUCUAUUUUUUUUCUUUCC	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1801_c2_g1_1123_TPlot.pdf
TRINITY_DN1801_c2_g1:1125	si_s68	TRINITY_DN1801_c2_g1	1114	1134	1125	-23.10	-15.70	0.67965367965368	8.5	5-21,1130-1114	1-4,1134-1131[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGAAAAAAAUAGGACAAU&CAACUUCUAUUUUUUUUCUUU	2	0.999999999979406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1801_c2_g1_1125_TPlot.pdf
TRINITY_DN1801_c2_g1:443	si_s76	TRINITY_DN1801_c2_g1	432	452	443	-23.60	-15.58	0.660169491525424	7.5	2-15,451-438;19-21,434-432	1-1,452-452[UP5];16-18,437-435[SIL]	(((...((((((((((((((.&.))))))))))))))...)))	GAGUACGGAAAGAAAGGGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1801_c2_g1_443_TPlot.pdf
TRINITY_DN1801_c2_g1:474	si_a789	TRINITY_DN1801_c2_g1	464	483	474	-24.80	-17.90	0.721774193548387	6	1-11,483-473;13-18,472-467	12-12,x-x[BULq];19-21,466-464[UP3]	...((((((-(((((((((((&))))))))))).))))))...	UAAGGAAAA-GGAAAAAUAGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1801_c2_g1_474_TPlot.pdf
TRINITY_DN1801_c2_g1:475	si_a788	TRINITY_DN1801_c2_g1	465	484	475	-24.80	-18.60	0.75	4	1-12,484-473;14-19,472-467	13-13,x-x[BULq];20-21,466-465[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	AAGGAAAA-GGAAAAAUAGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1801_c2_g1_475_TPlot.pdf
TRINITY_DN1801_c2_g1:476	si_a787	TRINITY_DN1801_c2_g1	466	485	476	-26.30	-18.80	0.714828897338403	3.5	2-13,484-473;15-20,472-467	1-1,485-485[UP5];14-14,x-x[BULq];21-21,466-466[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	AGGAAAA-GGAAAAAUAGAAU&CUUCUAUUUUUCUAUUUUCCA	4	0.999994304191659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1801_c2_g1_476_TPlot.pdf
TRINITY_DN1801_c2_g1:477	si_a786	TRINITY_DN1801_c2_g1	467	486	477	-26.60	-18.30	0.68796992481203	4.5	3-14,484-473;16-21,472-467	1-2,486-485[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	GGAAAA-GGAAAAAUAGAAUU&UCUUCUAUUUUUCUAUUUUCC	4	0.999999998106834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1801_c2_g1_477_TPlot.pdf
TRINITY_DN1801_c2_g1:603	si_s814	TRINITY_DN1801_c2_g1	592	612	603	-26.60	-17.60	0.661654135338346	9	1-13,612-600	14-21,599-592[UP3]	........(((((((((((((&)))))))))))))........	GUAUGGGAAGGAAAAGGUAAC&GUUACCUUUUCUUAAUAAUGA	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN1801_c2_g1_603_TPlot.pdf
TRINITY_DN1801_c2_g1:608	si_s809	TRINITY_DN1801_c2_g1	597	619	608	-28.50	-22.00	0.771929824561403	7.5	1-3,619-617;4-18,614-600	x-x,616-615[BULt];19-21,599-597[UP3]	...(((((((((((((((..(((&)))--)))))))))))))))...	GGAAGGAAAAGGUAACGACAAGA&UCU--UCGUUACCUUUUCUUAAU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1801_c2_g1_608_TPlot.pdf
TRINITY_DN1802_c0_g1:1053	si_s69	TRINITY_DN1802_c0_g1	1038	1062	1053	-23.40	-15.30	0.653846153846154	6.5	1-7,1062-1056;9-15,1054-1048;16-21,1043-1038	8-8,1055-1055[SIL];x-x,1047-1044[BULt]	((((((....(((((((.(((((((&))))))).)))))))----))))))	GAAAGAGGCAAAGAAAAAAGAAGUU&AACUUCUAUUUUUUU----UCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1802_c0_g1_1053_TPlot.pdf
TRINITY_DN1802_c0_g1:606	si_s554	TRINITY_DN1802_c0_g1	595	615	606	-25.90	-17.00	0.656370656370656	9	2-10,614-606;13-20,603-596	1-1,615-615[UP5];11-12,605-604[SIL];21-21,595-595[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	ACUGAAAGUUCUAGUUCUGUA&AAUAGAAUUAAUAUUUUCGGG	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN1802_c0_g1_606_TPlot.pdf
TRINITY_DN1802_c0_g1:969	si_s69	TRINITY_DN1802_c0_g1	954	978	969	-23.40	-15.30	0.653846153846154	6.5	1-7,978-972;9-15,970-964;16-21,959-954	8-8,971-971[SIL];x-x,963-960[BULt]	((((((....(((((((.(((((((&))))))).)))))))----))))))	GAAAGAGGCAAAGAAAAAAGAAGUU&AACUUCUAUUUUUUU----UCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1802_c0_g1_969_TPlot.pdf
TRINITY_DN18039_c0_g1:178	si_s71	TRINITY_DN18039_c0_g1	166	192	178	-25.70	-17.10	0.665369649805448	14	1-7,192-186;8-14,180-174;15-20,172-167	x-x,185-181[BULt];x-x,173-173[BULt];21-21,166-166[UP3]	.((((((.(((((((.....(((((((&)))))))-----)))))))-)))))).	UGGAAAGUAAAGAAAAAGAUGUAGAAG&CUUCUAU-----UUUUUUU-CUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN18039_c0_g1_178_TPlot.pdf
TRINITY_DN18039_c0_g1:179	si_a787	TRINITY_DN18039_c0_g1	166	192	179	-26.30	-17.70	0.673003802281369	11.5	1-7,192-186;8-13,181-176;14-21,173-166	x-x,185-182[BULt];x-x,175-174[BULt]	((((((((..((((((....(((((((&)))))))----))))))--))))))))	UGGAAAGUAAAGAAAAAGAUGUAGAAG&CUUCUAU----UUUUCU--AUUUUCCA	3	0.999999999998939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN18039_c0_g1_179_TPlot.pdf
TRINITY_DN18039_c0_g1:180	si_a786	TRINITY_DN18039_c0_g1	167	193	180	-26.60	-17.90	0.672932330827068	11.5	1-8,193-186;9-14,181-176;15-21,173-167	x-x,185-182[BULt];x-x,175-174[BULt]	(((((((..((((((....((((((((&))))))))----))))))--)))))))	GGAAAGUAAAGAAAAAGAUGUAGAAGA&UCUUCUAU----UUUUCU--AUUUUCC	2	0.999999922974697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN18039_c0_g1_180_TPlot.pdf
TRINITY_DN18039_c0_g1:184	si_s69	TRINITY_DN18039_c0_g1	173	194	184	-23.40	-15.80	0.675213675213675	8	3-9,192-186;10-20,184-174	1-2,194-193[UP5];x-x,185-185[BULt];21-21,173-173[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	UAAAGAAAAAGAUGUAGAAGAA&AACUUCUAU-UUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN18039_c0_g1_184_TPlot.pdf
TRINITY_DN18039_c0_g1:242	si_a356	TRINITY_DN18039_c0_g1	230	249	242	-26.90	-17.60	0.654275092936803	6.5	1-8,249-242;11-15,241-237;16-21,235-230	9-10,x-x[BULq];x-x,236-236[BULt]	((((((.(((((--((((((((&))))))))..)))))-))))))	GUCCGACUCAGA--AGAAUUAA&UUAAUUCUAUUUUGA-UCGGAU	3	0.999949787575333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN18039_c0_g1_242_TPlot.pdf
TRINITY_DN18039_c0_g1:30	si_s795	TRINITY_DN18039_c0_g1	19	39	30	-30.30	-21.20	0.6996699669967	8.5	3-8,37-32;10-21,30-19	1-2,39-38[UP5];9-9,31-31[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AUGAAGGUGAAGGACGAGUAG&AAGCUCGUAUUUUAUCUUCGU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN18039_c0_g1_30_TPlot.pdf
TRINITY_DN18048_c0_g1:1088	si_a18	TRINITY_DN18048_c0_g1	1077	1097	1088	-26.30	-18.20	0.692015209125475	11	3-6,1095-1092;8-20,1090-1078	1-2,1097-1096[UP5];7-7,1091-1091[SIL];21-21,1077-1077[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AAACUGGAAGUGGACGGGCAA&AAGCCUAUUUAUUUUUAGUUC	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN18048_c0_g1_1088_TPlot.pdf
TRINITY_DN18048_c0_g1:1167	si_a499	TRINITY_DN18048_c0_g1	1156	1179	1167	-35.20	-24.50	0.696022727272727	12.5	1-8,1179-1172;9-17,1168-1160	x-x,1171-1169[BULt];18-21,1159-1156[UP3]	....(((((((((...((((((((&))))))))---)))))))))....	AUGUGGAGGACGAAGUGAGACGAC&GUCGUUUU---UCGUCUUCCUUGG	2	0.999138612751087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN18048_c0_g1_1167_TPlot.pdf
TRINITY_DN18048_c0_g1:1408	si_s76	TRINITY_DN18048_c0_g1	1396	1417	1408	-23.60	-15.50	0.656779661016949	6.5	2-5,1416-1413;7-17,1411-1401;18-20,1399-1397	1-1,1417-1417[UP5];6-6,1412-1412[SIL];x-x,1400-1400[BULt];21-21,1396-1396[UP3]	.(((.(((((((((((.((((.&.)))).)))))))))))-))).	UAGACAGGGAAAGAAACGAAAA&AUUUUUUUUCUUUCCUU-UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18048_c0_g1_1408_TPlot.pdf
TRINITY_DN18053_c0_g1:198	si_s480	TRINITY_DN18053_c0_g1	187	207	198	-25.00	-17.20	0.688	13	1-12,207-196	13-21,195-187[UP3]	.........((((((((((((&)))))))))))).........	CAAAUUGAUGGUGUGGGAUCC&GGAUCCUAUAUUUAUUUAAAU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN18053_c0_g1_198_TPlot.pdf
TRINITY_DN18053_c0_g1:41	si_a784	TRINITY_DN18053_c0_g1	28	50	41	-24.70	-16.70	0.676113360323887	7.5	2-13,49-38;14-20,35-29	1-1,50-50[UP5];x-x,37-36[BULt];21-21,28-28[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	UAAAUAGGGUAAAGUAGGAGGGA&ACUCUUCUAUUUU--UCUAUUUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN18053_c0_g1_41_TPlot.pdf
TRINITY_DN18053_c0_g1:42	si_a783	TRINITY_DN18053_c0_g1	29	51	42	-24.70	-16.70	0.676113360323887	8.5	3-14,49-38;15-21,35-29	1-2,51-50[UP5];x-x,37-36[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	AAAUAGGGUAAAGUAGGAGGGAA&AACUCUUCUAUUUU--UCUAUUU	3	0.999999999999781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN18053_c0_g1_42_TPlot.pdf
TRINITY_DN18053_c0_g1:53	si_s76	TRINITY_DN18053_c0_g1	42	62	53	-23.60	-15.50	0.656779661016949	18	9-20,54-43	1-8,62-55[UP5];21-21,42-42[UP3]	.((((((((((((........&........)))))))))))).	UAGGAGGGAAGGAUUUGUUUG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18053_c0_g1_53_TPlot.pdf
TRINITY_DN18057_c0_g1:1133	si_a182	TRINITY_DN18057_c0_g1	1122	1143	1133	-31.80	-21.08	0.662893081761006	14.5	1-6,1143-1138;12-20,1131-1123	7-11,1137-1132[AILt];21-21,1122-1122[UP3]	.(((((((((......((((((&))))))-.....))))))))).	CCAGGGAGAGCUCUAGAUCUGG&CUAGAU-AAUAUCUUUCCCUGU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN18057_c0_g1_1133_TPlot.pdf
TRINITY_DN18057_c0_g1:1547	si_a784	TRINITY_DN18057_c0_g1	1536	1556	1547	-24.70	-16.20	0.65587044534413	7.5	3-8,1554-1549;10-21,1547-1536	1-2,1556-1555[UP5];9-9,1548-1548[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AAAAUGGAAAAGGAGAAGGAA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN18057_c0_g1_1547_TPlot.pdf
TRINITY_DN18057_c0_g1:210	si_s87	TRINITY_DN18057_c0_g1	199	220	210	-32.90	-22.50	0.683890577507599	7.5	1-3,220-218;4-17,216-203	x-x,217-217[BULt];18-21,202-199[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	AUCGGAGGAAGAAGAAGGUGAA&UUC-CUUUCUUCUUCUUCGCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN18057_c0_g1_210_TPlot.pdf
TRINITY_DN18057_c0_g1:211	si_s86	TRINITY_DN18057_c0_g1	200	221	211	-32.90	-23.20	0.70516717325228	6.5	1-4,221-218;5-18,216-203	x-x,217-217[BULt];19-21,202-200[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	UCGGAGGAAGAAGAAGGUGAAA&UUUC-CUUUCUUCUUCUUCGCU	2	0.999996527411654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN18057_c0_g1_211_TPlot.pdf
TRINITY_DN18057_c0_g1:212	si_s85	TRINITY_DN18057_c0_g1	201	222	212	-33.80	-23.30	0.689349112426036	6.5	2-5,221-218;6-19,216-203	1-1,222-222[UP5];x-x,217-217[BULt];20-21,202-201[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	CGGAGGAAGAAGAAGGUGAAAC&CUUUC-CUUUCUUCUUCUUCGC	2	0.999998852950503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN18057_c0_g1_212_TPlot.pdf
TRINITY_DN18057_c0_g1:213	si_s84	TRINITY_DN18057_c0_g1	202	223	213	-32.30	-23.30	0.721362229102167	7.5	3-6,221-218;7-20,216-203	1-2,223-222[UP5];x-x,217-217[BULt];21-21,202-202[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	GGAGGAAGAAGAAGGUGAAACG&UCUUUC-CUUUCUUCUUCUUCG	3	0.999999924378671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN18057_c0_g1_213_TPlot.pdf
TRINITY_DN18057_c0_g1:2446	si_a142	TRINITY_DN18057_c0_g1	2435	2455	2446	-23.50	-17.20	0.731914893617021	13.5	6-19,2450-2437	1-5,2455-2451[UP5];20-21,2436-2435[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAAAGACGGCGACGAUGACGG&AAUUAAUCGUUGUUGUUUUAA	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN18057_c0_g1_2446_TPlot.pdf
TRINITY_DN18057_c0_g1:2495	si_s82	TRINITY_DN18057_c0_g1	2484	2504	2495	-28.90	-20.70	0.716262975778547	12	3-6,2502-2499;8-21,2497-2484	1-2,2504-2503[UP5];7-7,2498-2498[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAGGGGAGGAGGGGCGGGGCU&UUUCUUUCCUUUCUUCUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN18057_c0_g1_2495_TPlot.pdf
TRINITY_DN18057_c0_g1:300	si_s76	TRINITY_DN18057_c0_g1	284	309	300	-23.60	-15.50	0.656779661016949	10.5	3-14,307-296;15-21,290-284	1-2,309-308[UP5];x-x,295-291[BULt]	(((((((.....((((((((((((..&..))))))))))))-----)))))))	AAGAGAGAUCAUGAAAGAAGGAAACA&AUUUUUUUUCUUUC-----CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18057_c0_g1_300_TPlot.pdf
TRINITY_DN18057_c0_g1:697	si_s78	TRINITY_DN18057_c0_g1	686	706	697	-26.20	-18.90	0.721374045801527	10	4-18,703-689	1-3,706-704[UP5];19-21,688-686[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCCAGAAAGGAGAGGAAACAC&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN18057_c0_g1_697_TPlot.pdf
TRINITY_DN18057_c0_g1:699	si_s76	TRINITY_DN18057_c0_g1	688	708	699	-23.60	-18.90	0.800847457627119	12	6-20,703-689	1-5,708-704[UP5];21-21,688-688[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGAAAGGAGAGGAAACACAG&AUUUUUUUUCUUUCCUUUCUU	3	0.999999675171817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18057_c0_g1_699_TPlot.pdf
TRINITY_DN18057_c0_g1:700	si_s75	TRINITY_DN18057_c0_g1	689	709	700	-24.00	-18.90	0.7875	12.5	7-21,703-689	1-6,709-704[UP5]	(((((((((((((((......&......)))))))))))))))	AGAAAGGAGAGGAAACACAGG&UAUUUUUUUUCUUUCCUUUCU	3	0.999985974189315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18057_c0_g1_700_TPlot.pdf
TRINITY_DN18057_c0_g1:702	si_s73	TRINITY_DN18057_c0_g1	691	711	702	-24.00	-16.14	0.6725	12.5	1-3,711-709;9-21,703-691	4-8,708-704[SIL]	(((((((((((((.....(((&))).....)))))))))))))	AAAGGAGAGGAAACACAGGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN18057_c0_g1_702_TPlot.pdf
TRINITY_DN18057_c0_g1:703	si_s72	TRINITY_DN18057_c0_g1	692	712	703	-24.10	-15.94	0.661410788381743	12	1-4,712-709;10-21,703-692	5-9,708-704[SIL]	((((((((((((.....((((&)))).....))))))))))))	AAGGAGAGGAAACACAGGGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN18057_c0_g1_703_TPlot.pdf
TRINITY_DN18057_c0_g1:925	si_a494	TRINITY_DN18057_c0_g1	914	934	925	-29.50	-19.60	0.664406779661017	11.5	5-17,930-918;19-21,916-914	1-4,934-931[UP5];18-18,917-917[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GAACGCGAAAGGCGGCACCAA&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999984958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN18057_c0_g1_925_TPlot.pdf
TRINITY_DN18057_c1_g1:1430	si_a405	TRINITY_DN18057_c1_g1	1419	1439	1430	-19.80	-13.50	0.681818181818182	9	1-9,1439-1431;11-17,1429-1423	10-10,1430-1430[SIL];18-21,1422-1419[UP3]	....(((((((.(((((((((&))))))))).)))))))....	CCUUGUGUAAAGAGAACGAUU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN18057_c1_g1_1430_TPlot.pdf
TRINITY_DN1805_c0_g2:1695	si_s77	TRINITY_DN1805_c0_g2	1684	1704	1695	-25.50	-16.78	0.658039215686275	7	1-13,1704-1692;17-21,1688-1684	14-16,1691-1689[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	GAAGAUUCGGAGGAAGAAAGA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1805_c0_g2_1695_TPlot.pdf
TRINITY_DN1805_c0_g2:1765	si_a785	TRINITY_DN1805_c0_g2	1755	1779	1765	-25.90	-17.00	0.656370656370656	13	1-9,1779-1771;10-14,1765-1761;16-21,1760-1755	x-x,1770-1766[BULt];15-15,x-x[BULq]	((((((-(((((.....(((((((((&)))))))))-----))))).))))))	GAAAAU-GAAAAAGUUGGUGGAAGAG&CUCUUCUAU-----UUUUCUAUUUUC	2	0.999999999999665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN1805_c0_g2_1765_TPlot.pdf
TRINITY_DN1805_c0_g2:2744	si_a451	TRINITY_DN1805_c0_g2	2733	2754	2744	-23.60	-15.50	0.656779661016949	10	1-6,2754-2749;7-16,2747-2738	x-x,2748-2748[BULt];17-21,2737-2733[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	UAGCAGUAGCAGCAGCUUAUCU&AGAUAA-UUGUUGUUAUAUAUA	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN1805_c0_g2_2744_TPlot.pdf
TRINITY_DN1805_c0_g2:2749	si_a447	TRINITY_DN1805_c0_g2	2737	2758	2749	-25.70	-16.80	0.653696498054475	11.5	4-10,2755-2749;11-20,2747-2738	1-3,2758-2756[UP5];x-x,2748-2748[BULt];21-21,2737-2737[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	AGUAGCAGCAGCUUAUCUUCGA&UAUGAGAUAA-UUGUUGUUAUA	3	0.999958989673994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN1805_c0_g2_2749_TPlot.pdf
TRINITY_DN1805_c0_g2:6280	si_s75	TRINITY_DN1805_c0_g2	6269	6289	6280	-24.00	-16.80	0.7	6	2-10,6288-6280;12-21,6278-6269	1-1,6289-6289[UP5];11-11,6279-6279[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AGAAGGGGAAUAAAAAGAGUC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1805_c0_g2_6280_TPlot.pdf
TRINITY_DN18077_c0_g1:247	si_a785	TRINITY_DN18077_c0_g1	236	256	247	-25.90	-18.00	0.694980694980695	9.5	1-7,256-250;10-17,247-240;19-21,238-236	8-9,249-248[SIL];18-18,239-239[SIL]	(((.((((((((..(((((((&)))))))..)))))))).)))	GGAUGUGGAAAAUCGGAGGGG&CUCUUCUAUUUUUCUAUUUUC	4	0.999999999933184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN18077_c0_g1_247_TPlot.pdf
TRINITY_DN1807_c0_g1:1972	si_s820	TRINITY_DN1807_c0_g1	1960	1981	1972	-22.10	-18.00	0.81447963800905	6	3-11,1979-1971;12-21,1969-1960	1-2,1981-1980[UP5];x-x,1970-1970[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	UGUUUUUCAUAUAUUGAGAAUA&UUUUCUUAAUA-AUGAAAAACA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN1807_c0_g1_1972_TPlot.pdf
TRINITY_DN18081_c0_g1:90	si_a472	TRINITY_DN18081_c0_g1	79	99	90	-21.50	-14.20	0.66046511627907	10.5	4-7,96-93;9-20,91-80	1-3,99-97[UP5];8-8,92-92[SIL];21-21,79-79[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	CAUGUAGCGAUGAAUACAAAU&AUAUGUAAUUAUUGUUAUAUA	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN18081_c0_g1_90_TPlot.pdf
TRINITY_DN18081_c0_g1:91	si_a471	TRINITY_DN18081_c0_g1	80	100	91	-21.10	-14.00	0.663507109004739	11.5	5-8,96-93;10-21,91-80	1-4,100-97[UP5];9-9,92-92[SIL]	((((((((((((.((((....&....)))).))))))))))))	AUGUAGCGAUGAAUACAAAUU&AAUAUGUAAUUAUUGUUAUAU	4	0.999999747732611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN18081_c0_g1_91_TPlot.pdf
TRINITY_DN18088_c0_g2:235	si_a72	TRINITY_DN18088_c0_g2	223	244	235	-21.90	-15.00	0.684931506849315	6	1-10,244-235;11-17,233-227	x-x,234-234[BULt];18-21,226-223[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AAAUUGAAAAAUCAAUUUGAAA&UUUCAAAUUG-UUUUUCAUUAU	4	0.999999992757229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN18088_c0_g2_235_TPlot.pdf
TRINITY_DN18088_c0_g2:239	si_a68	TRINITY_DN18088_c0_g2	227	250	239	-25.40	-18.00	0.708661417322835	5	1-4,250-247;5-14,244-235;15-21,233-227	x-x,246-245[BULt];x-x,234-234[BULt]	(((((((.((((((((((..((((&))))--))))))))))-)))))))	UGAAAAAUCAAUUUGAAAUUGAAG&CUUC--UUUCAAAUUG-UUUUUCA	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN18088_c0_g2_239_TPlot.pdf
TRINITY_DN18088_c0_g2:422	si_s803	TRINITY_DN18088_c0_g2	410	432	422	-26.00	-17.30	0.665384615384615	9	1-6,432-427;7-15,425-417;16-20,415-411	x-x,426-426[BULt];x-x,416-416[BULt];21-21,410-410[UP3]	.(((((.(((((((((.((((((&))))))-)))))))))-))))).	UGAGGGUUAACGAAGGCUGGGAU&AUUUUA-UCUUCGUUA-CCUUUU	2	0.999999950791193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN18088_c0_g2_422_TPlot.pdf
TRINITY_DN1808_c0_g1:1010	si_s72	TRINITY_DN1808_c0_g1	999	1017	1010	-24.10	-16.08	0.667219917012448	10.5	1-7,1017-1011;12-20,1008-1000	8-11,1010-1009[AILq];21-21,999-999[UP3]	.(((((((((..--(((((((&)))))))....))))))))).	UGGGAAAGAAUU--AAUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1808_c0_g1_1010_TPlot.pdf
TRINITY_DN1808_c0_g1:3732	si_a404	TRINITY_DN1808_c0_g1	3721	3741	3732	-21.70	-14.20	0.654377880184332	8.5	1-14,3741-3728	15-21,3727-3721[UP3]	.......((((((((((((((&)))))))))))))).......	CGAAACCAGACAAAAUAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1808_c0_g1_3732_TPlot.pdf
TRINITY_DN1808_c0_g1:3733	si_a403	TRINITY_DN1808_c0_g1	3722	3742	3733	-22.00	-14.30	0.65	8.5	2-15,3741-3728	1-1,3742-3742[UP5];16-21,3727-3722[UP3]	......((((((((((((((.&.))))))))))))))......	GAAACCAGACAAAAUAAUUCA&AGAAUUGUUUUGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN1808_c0_g1_3733_TPlot.pdf
TRINITY_DN1808_c0_g1:3888	si_a780	TRINITY_DN1808_c0_g1	3878	3897	3888	-27.30	-20.12	0.736996336996337	6.5	1-12,3897-3886;17-21,3882-3878	13-16,3885-3883[AILq]	(((((...-((((((((((((&))))))))))))....)))))	UGGAAUAG-GGAAGAGUUGGA&UUCAACUCUUCUAUUUUUCUA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN1808_c0_g1_3888_TPlot.pdf
TRINITY_DN1808_c0_g1:3889	si_a779	TRINITY_DN1808_c0_g1	3878	3898	3889	-27.00	-18.98	0.702962962962963	7	2-13,3897-3886;17-20,3882-3879	1-1,3898-3898[UP5];14-16,3885-3883[SIL];21-21,3878-3878[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	UGGAAUAGGGAAGAGUUGGAG&AUUCAACUCUUCUAUUUUUCU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1808_c0_g1_3889_TPlot.pdf
TRINITY_DN1808_c0_g1:3897	si_a599	TRINITY_DN1808_c0_g1	3887	3906	3897	-30.40	-19.80	0.651315789473684	6.5	1-11,3906-3896;13-18,3895-3890	12-12,x-x[BULq];19-21,3889-3887[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GAAGAGUUG-GAGAAUUCUGU&ACAGAAUUUUCGCAAUUCCAA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN1808_c0_g1_3897_TPlot.pdf
TRINITY_DN1808_c0_g1:4350	si_a61	TRINITY_DN1808_c0_g1	4339	4364	4350	-32.90	-22.00	0.668693009118541	12.5	2-4,4363-4361;5-6,4356-4355;7-21,4353-4339	1-1,4364-4364[UP5];x-x,4360-4357[BULt];x-x,4354-4354[BULt]	(((((((((((((((.((....(((.&.)))----))-)))))))))))))))	CGGUUUGAGAGAAGCUGAUAUUGUCA&CGAC----UC-GCUUCUUUCAAAUUG	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN1808_c0_g1_4350_TPlot.pdf
TRINITY_DN1808_c0_g1:6377	si_s422	TRINITY_DN1808_c0_g1	6366	6386	6377	-21.30	-14.20	0.666666666666667	9.5	5-15,6382-6372;17-21,6370-6366	1-4,6386-6383[UP5];16-16,6371-6371[SIL]	(((((.(((((((((((....&....))))))))))).)))))	AAUUGAUGUUAUGUAGAUUUU&AUAUUCUAUAUAACAAUAAUU	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN1808_c0_g1_6377_TPlot.pdf
TRINITY_DN1808_c0_g1:670	si_a899	TRINITY_DN1808_c0_g1	659	679	670	-18.70	-12.50	0.668449197860963	11	6-21,674-659	1-5,679-675[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUUUAUAUUAUUUGUGGUAA&UAAUAAUAAGUAAUAUAAAAA	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1808_c0_g1_670_TPlot.pdf
TRINITY_DN1808_c0_g1:793	si_a401	TRINITY_DN1808_c0_g1	782	802	793	-22.60	-15.20	0.672566371681416	7	2-11,801-792;13-17,790-786	1-1,802-802[UP5];12-12,791-791[SIL];18-21,785-782[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	UCAAAAACAUAACAAUUCUAG&AUAGAAUUGUUUUGUUUAUAU	2	0.999992672245195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1808_c0_g1_793_TPlot.pdf
TRINITY_DN1808_c0_g1:794	si_a400	TRINITY_DN1808_c0_g1	783	803	794	-22.80	-15.20	0.666666666666667	7	3-12,801-792;14-18,790-786	1-2,803-802[UP5];13-13,791-791[SIL];19-21,785-783[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	CAAAAACAUAACAAUUCUAGA&UAUAGAAUUGUUUUGUUUAUA	3	0.999999995372182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1808_c0_g1_794_TPlot.pdf
TRINITY_DN1808_c0_g1:795	si_a399	TRINITY_DN1808_c0_g1	784	804	795	-22.60	-15.20	0.672566371681416	8	4-13,801-792;15-19,790-786	1-3,804-802[UP5];14-14,791-791[SIL];20-21,785-784[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	AAAAACAUAACAAUUCUAGAA&AUAUAGAAUUGUUUUGUUUAU	2	0.999950182013822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN1808_c0_g1_795_TPlot.pdf
TRINITY_DN1808_c0_g1:796	si_a398	TRINITY_DN1808_c0_g1	785	805	796	-22.40	-15.20	0.678571428571429	9	5-14,801-792;16-20,790-786	1-4,805-802[UP5];15-15,791-791[SIL];21-21,785-785[UP3]	.(((((.((((((((((....&....)))))))))).))))).	AAAACAUAACAAUUCUAGAAG&AAUAUAGAAUUGUUUUGUUUA	2	0.999877941699564	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1808_c0_g1_796_TPlot.pdf
TRINITY_DN18098_c0_g1:6816	si_s525	TRINITY_DN18098_c0_g1	6805	6825	6816	-24.00	-16.00	0.666666666666667	10	5-18,6821-6808	1-4,6825-6822[UP5];19-21,6807-6805[UP3]	...((((((((((((((....&....))))))))))))))...	UAAAAAAAUGAUUUCGACGAG&UAAUUCGAAAUCAUUUUUGAU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN18098_c0_g1_6816_TPlot.pdf
TRINITY_DN18098_c0_g1:6817	si_s524	TRINITY_DN18098_c0_g1	6806	6826	6817	-23.90	-16.00	0.669456066945607	11	6-19,6821-6808	1-5,6826-6822[UP5];20-21,6807-6806[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAAAAAUGAUUUCGACGAGU&UUAAUUCGAAAUCAUUUUUGA	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN18098_c0_g1_6817_TPlot.pdf
TRINITY_DN18098_c0_g1:6818	si_s523	TRINITY_DN18098_c0_g1	6807	6827	6818	-24.50	-16.00	0.653061224489796	12	7-20,6821-6808	1-6,6827-6822[UP5];21-21,6807-6807[UP3]	.((((((((((((((......&......)))))))))))))).	AAAAAAUGAUUUCGACGAGUU&CUUAAUUCGAAAUCAUUUUUG	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN18098_c0_g1_6818_TPlot.pdf
TRINITY_DN18099_c0_g1:414	si_a406	TRINITY_DN18099_c0_g1	403	423	414	-19.80	-13.80	0.696969696969697	7.5	1-12,423-412;14-18,410-406	13-13,411-411[SIL];19-21,405-403[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AAAGAAUACAAACAAGGCGAU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999999488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN18099_c0_g1_414_TPlot.pdf
TRINITY_DN18099_c0_g1:842	si_s801	TRINITY_DN18099_c0_g1	830	851	842	-28.20	-19.00	0.673758865248227	8	1-7,851-845;9-16,843-836;18-19,833-832	8-8,844-844[SIL];17-17,835-834[AILt];20-21,831-830[UP3]	..((..((((((((.(((((((&))))))).))))))))-.))..	UUGGCGAACGAAGAAGAAAUGC&GUAUUUUAUCUUCGUU-ACCUU	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN18099_c0_g1_842_TPlot.pdf
TRINITY_DN18099_c0_g1:926	si_a789	TRINITY_DN18099_c0_g1	915	935	926	-24.80	-16.30	0.657258064516129	5	1-2,935-934;4-13,932-923;16-20,920-916	3-3,933-933[SIL];14-15,922-921[SIL];21-21,915-915[UP3]	.(((((..((((((((((.((&)).))))))))))..))))).	UUUGGAUCAUAGAAAAAUCGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999999878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN18099_c0_g1_926_TPlot.pdf
TRINITY_DN18099_c0_g1:927	si_a788	TRINITY_DN18099_c0_g1	916	936	927	-24.80	-17.10	0.689516129032258	4	1-3,936-934;5-14,932-923;17-21,920-916	4-4,933-933[SIL];15-16,922-921[SIL]	(((((..((((((((((.(((&))).))))))))))..)))))	UUGGAUCAUAGAAAAAUCGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.999999971382081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN18099_c0_g1_927_TPlot.pdf
TRINITY_DN180_c0_g1:2571	si_a502	TRINITY_DN180_c0_g1	2560	2583	2571	-32.10	-21.02	0.654828660436137	14.5	1-4,2583-2580;7-18,2574-2563	5-6,2579-2575[AILt];19-21,2562-2560[UP3]	...((((((((((((.....((((&))))---..))))))))))))...	UGCCCGAGGAAGAUGUCAUUAAAC&GUUU---UUCGUCUUCCUUGGAAU	2	0.99999999813598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN180_c0_g1_2571_TPlot.pdf
TRINITY_DN180_c0_g2:2430	si_a502	TRINITY_DN180_c0_g2	2419	2442	2430	-32.10	-21.02	0.654828660436137	14.5	1-4,2442-2439;7-18,2433-2422	5-6,2438-2434[AILt];19-21,2421-2419[UP3]	...((((((((((((.....((((&))))---..))))))))))))...	UGCCCGAGGAAGAUGUCAUUAAAC&GUUU---UUCGUCUUCCUUGGAAU	2	0.999999998159036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN180_c0_g2_2430_TPlot.pdf
TRINITY_DN18100_c0_g1:2335	si_a849	TRINITY_DN18100_c0_g1	2324	2346	2335	-30.70	-21.60	0.703583061889251	7.5	1-7,2346-2340;8-14,2337-2331;17-21,2328-2324	x-x,2339-2338[BULt];15-16,2330-2329[SIL]	(((((..(((((((..(((((((&)))))))--)))))))..)))))	GUUGGUAUUCAAGUAGUAGCAGC&GUUGCUA--ACUUGAAAUCCAAU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a849_TRINITY_DN18100_c0_g1_2335_TPlot.pdf
TRINITY_DN18100_c0_g1:2523	si_a69	TRINITY_DN18100_c0_g1	2506	2532	2523	-24.00	-16.24	0.676666666666667	17.5	1-10,2532-2523;13-21,2514-2506	11-12,2522-2515[AILt]	(((((((((........((((((((((&))))))))))------..)))))))))	AUGAGAAACUUAAUAUUUUUGAGAGAA&UUCUUUCAAA------UUGUUUUUCAU	3	0.99999999802248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN18100_c0_g1_2523_TPlot.pdf
TRINITY_DN18118_c4_g1:43	si_a455	TRINITY_DN18118_c4_g1	32	52	43	-21.10	-14.40	0.682464454976303	9.5	2-17,51-36	1-1,52-52[UP5];18-21,35-32[UP3]	....((((((((((((((((.&.))))))))))))))))....	GAAAUAUGUAUGACAAUGGUA&AAUUGUUGUUAUAUAUAAUAU	0	0.267054884610312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN18118_c4_g1_43_TPlot.pdf
TRINITY_DN1811_c1_g1:724	si_a72	TRINITY_DN1811_c1_g1	710	733	724	-21.90	-17.10	0.780821917808219	9	1-12,733-722;13-20,718-711	x-x,721-719[BULt];21-21,710-710[UP3]	.((((((((...((((((((((((&))))))))))))---)))))))).	CUAAUGAAAUUGGACGAUUUGAAA&UUUCAAAUUGUU---UUUCAUUAU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1811_c1_g1_724_TPlot.pdf
TRINITY_DN1812_c0_g1:1157	si_s693	TRINITY_DN1812_c0_g1	1145	1166	1157	-23.90	-15.60	0.652719665271967	9.5	1-4,1166-1163;6-14,1161-1153;16-20,1150-1146	5-5,1162-1162[SIL];15-15,1152-1151[AILt];21-21,1145-1145[UP3]	.(((((..(((((((((.((((&)))).)))))))))-.))))).	AAAUGACUUCGACUGGUGGAGC&GUUUAAUUAGUCGA-UUUAUUA	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN1812_c0_g1_1157_TPlot.pdf
TRINITY_DN1812_c0_g1:2207	si_a446	TRINITY_DN1812_c0_g1	2196	2216	2207	-25.50	-16.80	0.658823529411765	7	1-9,2216-2208;12-19,2205-2198	10-11,2207-2206[SIL];20-21,2197-2196[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	UCAACAAUGAAGAUCUCAUAU&AUAUGAGAUAAUUGUUGUUAU	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN1812_c0_g1_2207_TPlot.pdf
TRINITY_DN1812_c2_g2:274	si_a180	TRINITY_DN1812_c2_g2	263	286	274	-32.10	-20.90	0.651090342679128	15.5	1-7,286-280;11-15,273-269;17-21,267-263	8-10,279-274[AILt];16-16,268-268[SIL]	(((((.(((((......(((((((&)))))))---...))))).)))))	GGGGACAGAUGGCACCCUCUGGAC&GUCUAGA---UAAUAUCUUUCCCU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN1812_c2_g2_274_TPlot.pdf
TRINITY_DN18130_c0_g1:345	si_a767	TRINITY_DN18130_c0_g1	334	354	345	-30.10	-22.90	0.760797342192691	8	1-11,354-344;14-21,341-334	12-13,343-342[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GAGUUGAAGAAGUUGGAAGCC&GGUUUUUGAUUGAUUCAACUC	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN18130_c0_g1_345_TPlot.pdf
TRINITY_DN18137_c0_g2:609	si_a17	TRINITY_DN18137_c0_g2	598	618	609	-24.30	-17.00	0.699588477366255	9.5	4-17,615-602	1-3,618-616[UP5];18-21,601-598[UP3]	....((((((((((((((...&...))))))))))))))....	UUUAAAGAAUAAAUAGGCAAG&AAAGCCUAUUUAUUUUUAGUU	2	0.989488553500752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN18137_c0_g2_609_TPlot.pdf
TRINITY_DN18137_c0_g2:720	si_s39	TRINITY_DN18137_c0_g2	709	729	720	-22.30	-15.10	0.677130044843049	12.5	5-7,725-723;10-21,720-709	1-4,729-726[UP5];8-9,722-721[SIL]	((((((((((((..(((....&....)))..))))))))))))	GAGUCCAGUUAUGUAAGUAAG&AAAUCUUUAAUAAUUGGAUUU	4	0.999927850476115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN18137_c0_g2_720_TPlot.pdf
TRINITY_DN1813_c0_g1:10184	si_a62	TRINITY_DN1813_c0_g1	10171	10193	10184	-32.20	-22.30	0.692546583850932	7.5	1-12,10193-10182;13-14,10179-10178;17-21,10175-10171	x-x,10181-10180[BULt];15-16,10177-10176[SIL]	(((((..((..((((((((((((&))))))))))))--))..)))))	ACAAUGCGAGCGAGAAGCGAGUU&GACUCGCUUCUU--UCAAAUUGU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN1813_c0_g1_10184_TPlot.pdf
TRINITY_DN1813_c0_g1:10975	si_a68	TRINITY_DN1813_c0_g1	10963	10984	10975	-25.40	-17.70	0.696850393700787	7	1-12,10984-10973;14-16,10970-10968;18-21,10966-10963	13-13,10972-10971[AILt];17-17,10967-10967[SIL]	((((.(((..((((((((((((&))))))))))))-.))).))))	UGGAUGACCUAUUUGAAGGGAG&CUUCUUUCAAAU-UGUUUUUCA	2	0.999673723702483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1813_c0_g1_10975_TPlot.pdf
TRINITY_DN1813_c0_g1:12813	si_s638	TRINITY_DN1813_c0_g1	12802	12822	12813	-40.30	-27.90	0.692307692307692	8	2-3,12821-12820;5-9,12818-12814;11-20,12812-12803	1-1,12822-12822[UP5];4-4,12819-12819[SIL];10-10,12813-12813[SIL];21-21,12802-12802[UP3]	.((((((((((.(((((.((.&.)).))))).)))))))))).	CAUUGGGGGCAUACGCCGGCC&CGUAGGCGUUUGCCCUCGAUA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN1813_c0_g1_12813_TPlot.pdf
TRINITY_DN1813_c0_g1:12815	si_s636	TRINITY_DN1813_c0_g1	12804	12824	12815	-40.80	-26.60	0.651960784313726	11	4-5,12821-12820;7-11,12818-12814;13-21,12812-12804	1-3,12824-12822[UP5];6-6,12819-12819[SIL];12-12,12813-12813[SIL]	(((((((((.(((((.((...&...)).))))).)))))))))	UUGGGGGCAUACGCCGGCCAC&UUCGUAGGCGUUUGCCCUCGA	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN1813_c0_g1_12815_TPlot.pdf
TRINITY_DN1813_c0_g1:14959	si_s810	TRINITY_DN1813_c0_g1	14947	14968	14959	-27.90	-19.60	0.702508960573477	10	1-13,14968-14956;15-17,14953-14951	14-14,14955-14954[AILt];18-21,14950-14947[UP3]	....(((..(((((((((((((&)))))))))))))-.)))....	GACGGAGUUGGAGGUGGCGAAG&CUUCGUUACCUUU-UCUUAAUA	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1813_c0_g1_14959_TPlot.pdf
TRINITY_DN1813_c0_g1:14960	si_s809	TRINITY_DN1813_c0_g1	14948	14969	14960	-28.50	-19.60	0.687719298245614	9.5	2-14,14968-14956;16-18,14953-14951	1-1,14969-14969[UP5];15-15,14955-14954[AILt];19-21,14950-14948[UP3]	...(((..(((((((((((((.&.)))))))))))))-.)))...	ACGGAGUUGGAGGUGGCGAAGU&UCUUCGUUACCUUU-UCUUAAU	2	0.99958150391399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1813_c0_g1_14960_TPlot.pdf
TRINITY_DN1813_c0_g1:14961	si_s808	TRINITY_DN1813_c0_g1	14949	14970	14961	-28.60	-19.60	0.685314685314685	10.5	3-15,14968-14956;17-19,14953-14951	1-2,14970-14969[UP5];16-16,14955-14954[AILt];20-21,14950-14949[UP3]	..(((..(((((((((((((..&..)))))))))))))-.)))..	CGGAGUUGGAGGUGGCGAAGUA&AUCUUCGUUACCUUU-UCUUAA	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1813_c0_g1_14961_TPlot.pdf
TRINITY_DN1813_c0_g1:14968	si_s801	TRINITY_DN1813_c0_g1	14957	14980	14968	-28.20	-19.60	0.695035460992908	10.5	1-2,14980-14979;4-9,14977-14972;10-21,14968-14957	3-3,14978-14978[SIL];x-x,14971-14969[BULt]	((((((((((((...((((((.((&)).))))))---))))))))))))	GAGGUGGCGAAGUACAUAAAGAAC&GUAUUUUAU---CUUCGUUACCUU	2	0.971549756688101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN1813_c0_g1_14968_TPlot.pdf
TRINITY_DN1813_c0_g1:14972	si_s800	TRINITY_DN1813_c0_g1	14958	14981	14972	-29.70	-19.80	0.666666666666667	10	1-3,14981-14979;5-10,14977-14972;11-21,14968-14958	4-4,14978-14978[SIL];x-x,14971-14969[BULt]	(((((((((((...((((((.(((&))).))))))---)))))))))))	AGGUGGCGAAGUACAUAAAGAACG&CGUAUUUUAU---CUUCGUUACCU	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN1813_c0_g1_14972_TPlot.pdf
TRINITY_DN1813_c0_g1:15002	si_s101	TRINITY_DN1813_c0_g1	14991	15011	15002	-32.50	-21.60	0.664615384615385	10	2-16,15010-14996	1-1,15011-15011[UP5];17-21,14995-14991[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CCUCCUUCGGUCCGAAGUGGC&UUCGCUUCGGAUUGGAAAAUA	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN1813_c0_g1_15002_TPlot.pdf
TRINITY_DN1813_c0_g1:16972	si_s86	TRINITY_DN1813_c0_g1	16961	16985	16972	-32.90	-22.00	0.668693009118541	13.5	1-5,16985-16981;6-7,16976-16975;9-21,16973-16961	x-x,16980-16977[BULt];8-8,16974-16974[SIL]	(((((((((((((.((....(((((&)))))----)).)))))))))))))	GGUGAAGAGGAAGUGAGUGCGGAGA&UUUCC----UUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1813_c0_g1_16972_TPlot.pdf
TRINITY_DN1813_c0_g1:6166	si_s67	TRINITY_DN1813_c0_g1	6155	6177	6166	-25.60	-17.20	0.671875	10.5	2-6,6176-6172;7-19,6169-6157	1-1,6177-6177[UP5];x-x,6171-6170[BULt];20-21,6156-6155[UP3]	..(((((((((((((..(((((.&.)))))--)))))))))))))..	GCGAGAGGAAAUGGAUCGGUUGA&GCAACU--UCUAUUUUUUUUCUU	4	0.999999999976683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1813_c0_g1_6166_TPlot.pdf
TRINITY_DN1813_c0_g1:7577	si_a67	TRINITY_DN1813_c0_g1	7566	7587	7577	-27.20	-18.90	0.694852941176471	9	1-6,7587-7582;7-17,7580-7570	x-x,7581-7581[BULt];18-21,7569-7566[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	CGGCGGCAAUUUGAGAAGGAGC&GCUUCU-UUCAAAUUGUUUUUC	4	0.999996230722476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1813_c0_g1_7577_TPlot.pdf
TRINITY_DN18145_c0_g1:2569	si_a314	TRINITY_DN18145_c0_g1	2558	2578	2569	-27.10	-18.90	0.697416974169742	10.5	1-4,2578-2575;7-17,2572-2562	5-6,2574-2573[SIL];18-21,2561-2558[UP3]	....(((((((((((..((((&))))..)))))))))))....	UUUCGUCAUGGAUAGUGCCGA&UUGGAUUUAUCCAUGAUUUUU	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN18145_c0_g1_2569_TPlot.pdf
TRINITY_DN18145_c0_g1:834	si_a474	TRINITY_DN18145_c0_g1	823	842	834	-23.60	-15.90	0.673728813559322	7	2-4,841-839;7-20,837-824	1-1,842-842[UP5];5-6,838-838[AILq];21-21,823-823[UP3]	.((((((((((((((.-(((.&.)))..)))))))))))))).	CCUGUGUAACAAUAAA-ACAG&AUGUAAUUAUUGUUAUAUAGA	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN18145_c0_g1_834_TPlot.pdf
TRINITY_DN18149_c0_g2:218	si_a576	TRINITY_DN18149_c0_g2	207	226	218	-28.70	-19.70	0.686411149825784	7	2-8,225-219;11-21,217-207	1-1,226-226[UP5];9-10,218-218[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	UUCUUGUUACAU-UAUACGGG&AUCGUAUGUUUGUAACAAGAA	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN18149_c0_g2_218_TPlot.pdf
TRINITY_DN1814_c0_g1:1223	si_a784	TRINITY_DN1814_c0_g1	1212	1231	1223	-24.70	-16.10	0.651821862348178	11	1-8,1231-1224;14-21,1219-1212	9-13,1223-1220[AILq]	((((((((....-((((((((&)))))))).....))))))))	AAGAUAGGUAAG-GGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1814_c0_g1_1223_TPlot.pdf
TRINITY_DN1814_c0_g1:1227	si_a779	TRINITY_DN1814_c0_g1	1213	1236	1227	-27.00	-18.20	0.674074074074074	6.5	2-13,1235-1224;14-17,1220-1217;19-21,1215-1213	1-1,1236-1236[UP5];x-x,1223-1221[BULt];18-18,1216-1216[SIL]	(((.((((...((((((((((((.&.))))))))))))---)))).)))	AGAUAGGUAAGGGAAGAGUUGAAG&AUUCAACUCUUCU---AUUUUUCU	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN1814_c0_g1_1227_TPlot.pdf
TRINITY_DN1814_c0_g1:1235	si_a771	TRINITY_DN1814_c0_g1	1224	1247	1235	-29.40	-19.90	0.67687074829932	15.5	1-6,1247-1242;10-21,1235-1224	7-9,1241-1236[AILt]	((((((((((((......((((((&))))))---...))))))))))))	GGAAGAGUUGAAGAUAUUGUCGGA&UUUGAU---UGAUUCAACUCUUCU	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN1814_c0_g1_1235_TPlot.pdf
TRINITY_DN1814_c0_g1:1236	si_a770	TRINITY_DN1814_c0_g1	1225	1248	1236	-28.70	-18.80	0.655052264808362	16	2-7,1247-1242;11-21,1235-1225	1-1,1248-1248[UP5];8-10,1241-1236[AILt]	(((((((((((......((((((.&.))))))---...)))))))))))	GAAGAGUUGAAGAUAUUGUCGGAG&UUUUGAU---UGAUUCAACUCUUC	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN1814_c0_g1_1236_TPlot.pdf
TRINITY_DN1814_c0_g1:1266	si_a405	TRINITY_DN1814_c0_g1	1255	1275	1266	-19.80	-13.00	0.656565656565657	12	3-15,1273-1261	1-2,1275-1274[UP5];16-21,1260-1255[UP3]	......(((((((((((((..&..)))))))))))))......	GUCUGGGUGAACGAAACGAGA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1814_c0_g1_1266_TPlot.pdf
TRINITY_DN1814_c0_g1:1513	si_a793	TRINITY_DN1814_c0_g1	1501	1523	1513	-28.50	-18.60	0.652631578947368	10.5	3-8,1521-1516;9-18,1514-1505;19-20,1503-1502	1-2,1523-1522[UP5];x-x,1515-1515[BULt];x-x,1504-1504[BULt];21-21,1501-1501[UP3]	.((.((((((((((.((((((..&..))))))-))))))))))-)).	CCGUGGUUGGAAAGCUGGAGAUC&UUUUUCUA-UUUUCCAAUC-CGA	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN1814_c0_g1_1513_TPlot.pdf
TRINITY_DN1814_c0_g1:2681	si_a498	TRINITY_DN1814_c0_g1	2668	2689	2681	-33.50	-23.10	0.68955223880597	7.5	1-9,2689-2681;11-15,2680-2676;16-21,2673-2668	10-10,x-x[BULq];x-x,2675-2674[BULt]	((((((..(((((-(((((((((&))))))))).)))))--))))))	CAAGGACUGGACG-GGAAUGACA&UGUCGUUUUUCGUCU--UCCUUG	4	0.999999618795197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1814_c0_g1_2681_TPlot.pdf
TRINITY_DN1814_c0_g1:4904	si_a628	TRINITY_DN1814_c0_g1	4893	4913	4904	-27.10	-18.30	0.675276752767528	9.5	1-11,4913-4903;14-18,4900-4896	12-13,4902-4901[SIL];19-21,4895-4893[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	UUCGAAAUGUGCGUAAUGCGC&GCGUAUUAUGUCGAUUUUUUU	3	0.99998247581855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN1814_c0_g1_4904_TPlot.pdf
TRINITY_DN1815_c0_g1:1366	si_a401	TRINITY_DN1815_c0_g1	1355	1374	1366	-22.60	-15.20	0.672566371681416	9	2-4,1373-1371;7-19,1369-1357	1-1,1374-1374[UP5];5-6,1370-1370[AILq];20-21,1356-1355[UP3]	..(((((((((((((.-(((.&.)))..)))))))))))))..	GGGUGAACAAGACAAG-CUAA&AUAGAAUUGUUUUGUUUAUAU	4	0.999999995107032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN1815_c0_g1_1366_TPlot.pdf
TRINITY_DN1815_c0_g1:1367	si_a400	TRINITY_DN1815_c0_g1	1356	1375	1367	-22.80	-15.20	0.666666666666667	10	3-5,1373-1371;8-20,1369-1357	1-2,1375-1374[UP5];6-7,1370-1370[AILq];21-21,1356-1356[UP3]	.(((((((((((((.-(((..&..)))..))))))))))))).	GGUGAACAAGACAAG-CUAAC&UAUAGAAUUGUUUUGUUUAUA	3	0.999999992006172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1815_c0_g1_1367_TPlot.pdf
TRINITY_DN1815_c0_g1:1399	si_a284	TRINITY_DN1815_c0_g1	1388	1409	1399	-28.30	-19.00	0.671378091872792	10	2-5,1408-1405;6-17,1403-1392	1-1,1409-1409[UP5];x-x,1404-1404[BULt];18-21,1391-1388[UP3]	....((((((((((((.((((.&.))))-))))))))))))....	UCGAGGAUCCAAGUGGUUCUUA&AAAGA-UCGCUUGGAUUUAAAA	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN1815_c0_g1_1399_TPlot.pdf
TRINITY_DN1815_c0_g1:1403	si_a301	TRINITY_DN1815_c0_g1	1392	1412	1403	-27.80	-19.70	0.70863309352518	12	5-8,1408-1405;10-21,1403-1392	1-4,1412-1409[UP5];9-9,1404-1404[SIL]	((((((((((((.((((....&....)))).))))))))))))	GGAUCCAAGUGGUUCUUAAGA&AAAAAAGAUUCGCUUGGAUUU	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN1815_c0_g1_1403_TPlot.pdf
TRINITY_DN1815_c0_g1:1404	si_a300	TRINITY_DN1815_c0_g1	1393	1413	1404	-28.20	-19.40	0.687943262411348	13	6-9,1408-1405;11-21,1403-1393	1-5,1413-1409[UP5];10-10,1404-1404[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	GAUCCAAGUGGUUCUUAAGAA&UAAAAAAGAUUCGCUUGGAUU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN1815_c0_g1_1404_TPlot.pdf
TRINITY_DN1815_c0_g1:1443	si_s81	TRINITY_DN1815_c0_g1	1432	1452	1443	-28.90	-18.90	0.653979238754325	3	1-8,1452-1445;10-18,1443-1435;20-21,1433-1432	9-9,1444-1444[SIL];19-19,1434-1434[SIL]	((.(((((((((.((((((((&)))))))).))))))))).))	AGCAGAAGAAAGCAAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1815_c0_g1_1443_TPlot.pdf
TRINITY_DN1815_c0_g1:1444	si_s80	TRINITY_DN1815_c0_g1	1433	1453	1444	-28.20	-18.80	0.666666666666667	4	1-9,1453-1445;11-19,1443-1435	10-10,1444-1444[SIL];20-21,1434-1433[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GCAGAAGAAAGCAAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN1815_c0_g1_1444_TPlot.pdf
TRINITY_DN1815_c0_g1:1445	si_s79	TRINITY_DN1815_c0_g1	1434	1454	1445	-26.20	-19.00	0.725190839694656	4	2-10,1453-1445;12-20,1443-1435	1-1,1454-1454[UP5];11-11,1444-1444[SIL];21-21,1434-1434[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	CAGAAGAAAGCAAAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1815_c0_g1_1445_TPlot.pdf
TRINITY_DN1815_c0_g1:1446	si_s78	TRINITY_DN1815_c0_g1	1435	1455	1446	-26.20	-20.70	0.790076335877863	3	1-11,1455-1445;13-21,1443-1435	12-12,1444-1444[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AGAAGAAAGCAAAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	4	0.999998243863789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1815_c0_g1_1446_TPlot.pdf
TRINITY_DN1815_c0_g1:1449	si_s75	TRINITY_DN1815_c0_g1	1438	1458	1449	-24.00	-15.80	0.658333333333333	6	3-14,1456-1445;16-21,1443-1438	1-2,1458-1457[UP5];15-15,1444-1444[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAAGCAAAGAAAAAGAGCA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1815_c0_g1_1449_TPlot.pdf
TRINITY_DN1815_c0_g1:800	si_a403	TRINITY_DN1815_c0_g1	789	809	800	-22.00	-15.10	0.686363636363636	8.5	2-11,808-799;13-17,797-793	1-1,809-809[UP5];12-12,798-798[SIL];18-21,792-789[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	UUACGUAAAGAAAGCAAUUCG&AGAAUUGUUUUGUUUAUAUUU	4	0.999999994794446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN1815_c0_g1_800_TPlot.pdf
TRINITY_DN1815_c0_g1:803	si_a400	TRINITY_DN1815_c0_g1	792	812	803	-22.80	-15.10	0.662280701754386	10.5	5-14,808-799;16-20,797-793	1-4,812-809[UP5];15-15,798-798[SIL];21-21,792-792[UP3]	.(((((.((((((((((....&....)))))))))).))))).	CGUAAAGAAAGCAAUUCGGCC&UAUAGAAUUGUUUUGUUUAUA	4	0.999999999672527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN1815_c0_g1_803_TPlot.pdf
TRINITY_DN18166_c0_g1:13	si_s79	TRINITY_DN18166_c0_g1	2	22	13	-26.20	-21.80	0.83206106870229	4.5	1-18,22-5	19-21,4-2[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAAAAGGAAGGAAAGAGAAAA&UUUUUUCUUUCCUUUCUUCUU	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN18166_c0_g1_13_TPlot.pdf
TRINITY_DN18166_c0_g1:15	si_s77	TRINITY_DN18166_c0_g1	4	24	15	-25.50	-22.90	0.898039215686274	3.5	2-20,23-5	1-1,24-24[UP5];21-21,4-4[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AAAGGAAGGAAAGAGAAAAAG&UUUUUUUUCUUUCCUUUCUUC	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN18166_c0_g1_15_TPlot.pdf
TRINITY_DN18166_c0_g1:16	si_s76	TRINITY_DN18166_c0_g1	5	25	16	-23.60	-22.90	0.970338983050847	4.5	3-21,23-5	1-2,25-24[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AAGGAAGGAAAGAGAAAAAGA&AUUUUUUUUCUUUCCUUUCUU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18166_c0_g1_16_TPlot.pdf
TRINITY_DN18166_c0_g1:17	si_s75	TRINITY_DN18166_c0_g1	6	26	17	-24.00	-22.00	0.916666666666667	6.5	4-21,23-6	1-3,26-24[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGAAGGAAAGAGAAAAAGAG&UAUUUUUUUUCUUUCCUUUCU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18166_c0_g1_17_TPlot.pdf
TRINITY_DN18166_c0_g1:18	si_s74	TRINITY_DN18166_c0_g1	7	26	18	-25.00	-21.50	0.86	4.5	1-2,26-25;4-21,24-7	3-3,x-x[BULq]	((((((((((((((((((-((&)).))))))))))))))))))	GGAAGGAAAGAGAAAAAG-AG&CUAUUUUUUUUCUUUCCUUUC	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN18166_c0_g1_18_TPlot.pdf
TRINITY_DN18166_c0_g1:19	si_s73	TRINITY_DN18166_c0_g1	8	27	19	-24.00	-20.80	0.866666666666667	4.5	1-3,27-25;5-21,24-8	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	GAAGGAAAGAGAAAAAG-AGA&UCUAUUUUUUUUCUUUCCUUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN18166_c0_g1_19_TPlot.pdf
TRINITY_DN18166_c0_g1:20	si_s72	TRINITY_DN18166_c0_g1	9	28	20	-24.10	-20.20	0.838174273858921	4	1-4,28-25;6-21,24-9	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AAGGAAAGAGAAAAAG-AGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN18166_c0_g1_20_TPlot.pdf
TRINITY_DN18166_c0_g1:21	si_s71	TRINITY_DN18166_c0_g1	10	29	21	-25.70	-19.40	0.754863813229572	4.5	2-5,28-25;7-21,24-10	1-1,29-29[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AGGAAAGAGAAAAAG-AGAAC&CUUCUAUUUUUUUUCUUUCCU	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN18166_c0_g1_21_TPlot.pdf
TRINITY_DN18166_c0_g1:22	si_s70	TRINITY_DN18166_c0_g1	11	30	22	-25.80	-18.10	0.701550387596899	6.5	3-6,28-25;8-21,24-11	1-2,30-29[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAAAGAGAAAAAG-AGAACG&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999998621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN18166_c0_g1_22_TPlot.pdf
TRINITY_DN18166_c0_g1:330	si_a67	TRINITY_DN18166_c0_g1	323	339	330	-27.20	-18.10	0.665441176470588	9	1-10,339-330;15-21,329-323	11-14,x-x[BULq]	(((((((----((((((((((&))))))))))....)))))))	GAGGAAC----UGAAGGAGGC&GCUUCUUUCAAAUUGUUUUUC	2	0.999999669590304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN18166_c0_g1_330_TPlot.pdf
TRINITY_DN18166_c0_g1:437	si_s698	TRINITY_DN18166_c0_g1	422	446	437	-27.00	-18.50	0.685185185185185	18.5	5-10,442-437;11-20,432-423	1-4,446-443[UP5];x-x,436-433[BULt];21-21,422-422[UP3]	.((((((((((....((((((....&....))))))----)))))))))).	CUCACUGAUGAAGAGGUCGACGAGA&AUUAGUCGAU----UUAUUAGUGAA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN18166_c0_g1_437_TPlot.pdf
TRINITY_DN18166_c0_g1:443	si_s804	TRINITY_DN18166_c0_g1	431	451	443	-27.90	-19.40	0.695340501792115	8	3-8,449-444;10-13,443-440;14-21,438-431	1-2,451-450[UP5];9-9,x-x[BULq];x-x,439-439[BULt]	((((((((.((((-((((((..&..)))))).))))-))))))))	GAAGAGGUCGACG-AGAUGAUU&UUUUAUCUUCGUU-ACCUUUUC	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN18166_c0_g1_443_TPlot.pdf
TRINITY_DN18166_c0_g1:662	si_s673	TRINITY_DN18166_c0_g1	650	671	662	-26.80	-17.50	0.652985074626866	6.5	3-16,669-656;17-21,654-650	1-2,671-670[UP5];x-x,655-655[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	CUUAUGGUUUUUGUAAUCAAGC&AAUUGAUUAUAGAAAC-AUGAG	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s673_TRINITY_DN18166_c0_g1_662_TPlot.pdf
TRINITY_DN18166_c0_g1:701	si_a353	TRINITY_DN18166_c0_g1	689	710	701	-24.00	-15.90	0.6625	8.5	2-14,709-697;17-21,693-689	1-1,710-710[UP5];15-16,696-694[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	CGGUCCGUGGUGGAAUUGAUGG&AUAUUAAUUCUAUU-UUGAUCG	4	0.999631482924068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN18166_c0_g1_701_TPlot.pdf
TRINITY_DN1816_c0_g1:1403	si_a647	TRINITY_DN1816_c0_g1	1389	1412	1403	-29.50	-19.20	0.650847457627119	9.5	1-11,1412-1402;13-14,1399-1398;15-20,1395-1390	12-12,1401-1400[AILt];x-x,1397-1396[BULt];21-21,1389-1389[UP3]	.((((((..((..(((((((((((&)))))))))))-.))--)))))).	CUUUCCCAUGAGGAUGUUGCUCAG&UUGAGUAAUAU-AUC--GGGAAAU	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN1816_c0_g1_1403_TPlot.pdf
TRINITY_DN18177_c0_g1:1325	si_s705	TRINITY_DN18177_c0_g1	1314	1334	1325	-31.40	-21.50	0.684713375796178	9	3-10,1332-1325;12-21,1323-1314	1-2,1334-1333[UP5];11-11,1324-1324[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UUCCCUGUUCCUUGGUAGAGG&GAUUUAUUAGUGAACAGGGAA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN18177_c0_g1_1325_TPlot.pdf
TRINITY_DN18177_c0_g1:593	si_a821	TRINITY_DN18177_c0_g1	582	602	593	-26.20	-17.40	0.66412213740458	7.5	2-16,601-587	1-1,602-602[UP5];17-21,586-582[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GGUUAUUUUUCCUUUUUUCUG&AAGAAGAAAGGAAAGAAAAAA	0	0.141948271470558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN18177_c0_g1_593_TPlot.pdf
TRINITY_DN1817_c0_g1:1333	si_a786	TRINITY_DN1817_c0_g1	1322	1346	1333	-26.60	-19.00	0.714285714285714	11.5	1-9,1346-1338;10-20,1333-1323	x-x,1337-1334[BULt];21-21,1322-1322[UP3]	.(((((((((((....(((((((((&)))))))))----))))))))))).	AGGAGAUGGAGAAGAAAAUAGAAGA&UCUUCUAUU----UUUCUAUUUUCC	2	0.998491877366458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1817_c0_g1_1333_TPlot.pdf
TRINITY_DN1817_c0_g1:1334	si_s73	TRINITY_DN1817_c0_g1	1320	1343	1334	-24.00	-16.70	0.695833333333333	7	1-10,1343-1334;11-14,1332-1329;15-21,1326-1320	x-x,1333-1333[BULt];x-x,1328-1327[BULt]	(((((((..((((.((((((((((&))))))))))-))))--)))))))	AAAGGAGAUGGAGAAGAAAAUAGA&UCUAUUUUUU-UUCU--UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1817_c0_g1_1334_TPlot.pdf
TRINITY_DN1817_c0_g1:1335	si_s72	TRINITY_DN1817_c0_g1	1321	1344	1335	-24.10	-16.90	0.701244813278008	7	1-11,1344-1334;12-15,1332-1329;16-21,1326-1321	x-x,1333-1333[BULt];x-x,1328-1327[BULt]	((((((..((((.(((((((((((&)))))))))))-))))--))))))	AAGGAGAUGGAGAAGAAAAUAGAA&UUCUAUUUUUU-UUCU--UUCCUU	2	0.999999999998204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1817_c0_g1_1335_TPlot.pdf
TRINITY_DN1817_c0_g1:1336	si_s71	TRINITY_DN1817_c0_g1	1322	1345	1336	-25.70	-18.90	0.735408560311284	6.5	1-12,1345-1334;13-16,1332-1329;17-21,1326-1322	x-x,1333-1333[BULt];x-x,1328-1327[BULt]	(((((..((((.((((((((((((&))))))))))))-))))--)))))	AGGAGAUGGAGAAGAAAAUAGAAG&CUUCUAUUUUUU-UUCU--UUCCU	3	0.999999991842697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1817_c0_g1_1336_TPlot.pdf
TRINITY_DN1817_c0_g1:1337	si_s70	TRINITY_DN1817_c0_g1	1323	1346	1337	-25.80	-17.60	0.682170542635659	6.5	2-13,1345-1334;14-17,1332-1329;18-21,1326-1323	1-1,1346-1346[UP5];x-x,1333-1333[BULt];x-x,1328-1327[BULt]	((((..((((.((((((((((((.&.))))))))))))-))))--))))	GGAGAUGGAGAAGAAAAUAGAAGA&ACUUCUAUUUUUU-UUCU--UUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1817_c0_g1_1337_TPlot.pdf
TRINITY_DN1817_c0_g1:1339	si_a784	TRINITY_DN1817_c0_g1	1324	1348	1339	-24.70	-16.90	0.684210526315789	13	3-11,1346-1338;12-21,1333-1324	1-2,1348-1347[UP5];x-x,1337-1334[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	GAGAUGGAGAAGAAAAUAGAAGAAA&ACUCUUCUAUU----UUUCUAUUUU	2	0.999999978087156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1817_c0_g1_1339_TPlot.pdf
TRINITY_DN1817_c0_g1:4874	si_a704	TRINITY_DN1817_c0_g1	4859	4883	4874	-29.30	-19.50	0.665529010238908	15	1-10,4883-4874;11-15,4869-4865	x-x,4873-4870[BULt];16-21,4864-4859[UP3]	......(((((....((((((((((&))))))))))----)))))......	CCAGAAUUGGAACCUGUGUACCAGU&ACUGGUACAU----UCCAAAAUAAU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN1817_c0_g1_4874_TPlot.pdf
TRINITY_DN1817_c0_g1:5152	si_s87	TRINITY_DN1817_c0_g1	5141	5169	5152	-32.90	-22.80	0.693009118541034	18	1-4,5169-5166;5-9,5164-5160;10-21,5152-5141	x-x,5165-5165[BULt];x-x,5159-5153[BULt]	((((((((((((.......(((((.((((&))))-)))))-------))))))))))))	AAGCGGAGAAGAUUGUUCGGGAAAUGGAG&UUCC-UUUCU-------UCUUCUUCGCUU	4	0.999999999999538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1817_c0_g1_5152_TPlot.pdf
TRINITY_DN1817_c0_g1:5290	si_s316	TRINITY_DN1817_c0_g1	5278	5299	5290	-31.50	-20.50	0.650793650793651	7	3-13,5297-5287;14-15,5285-5284;17-19,5282-5280	1-2,5299-5298[UP5];x-x,5286-5286[BULt];16-16,5283-5283[SIL];20-21,5279-5278[UP3]	..(((.((.(((((((((((..&..)))))))))))-)).)))..	AAUGUUACUAAGAAGGACAGUU&UUCUGUCCUUCUU-GUUACAAA	3	0.999999935685347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1817_c0_g1_5290_TPlot.pdf
TRINITY_DN1817_c0_g1:5373	si_s48	TRINITY_DN1817_c0_g1	5362	5382	5373	-28.80	-19.70	0.684027777777778	7.5	1-18,5382-5365	19-21,5364-5362[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUAGACUUGAAGUCUGGUUAU&AUAAUUGGAUUUCAAGUUAGC	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN1817_c0_g1_5373_TPlot.pdf
TRINITY_DN1817_c0_g1:5375	si_s46	TRINITY_DN1817_c0_g1	5364	5384	5375	-25.00	-21.70	0.868	6	1-20,5384-5365	21-21,5364-5364[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AGACUUGAAGUCUGGUUAUUG&UAAUAAUUGGAUUUCAAGUUA	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN1817_c0_g1_5375_TPlot.pdf
TRINITY_DN1817_c0_g1:5674	si_a71	TRINITY_DN1817_c0_g1	5663	5683	5674	-23.30	-16.20	0.695278969957081	7.5	1-8,5683-5676;10-19,5674-5665	9-9,5675-5675[SIL];20-21,5664-5663[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UUAUGGAAAAUGUUUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	2	0.999801676684109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1817_c0_g1_5674_TPlot.pdf
TRINITY_DN1817_c0_g1:5676	si_a69	TRINITY_DN1817_c0_g1	5665	5685	5676	-24.00	-16.90	0.704166666666667	6.5	1-10,5685-5676;12-21,5674-5665	11-11,5675-5675[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AUGGAAAAUGUUUUGAGAGGG&UUCUUUCAAAUUGUUUUUCAU	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1817_c0_g1_5676_TPlot.pdf
TRINITY_DN1817_c1_g1:2059	si_a90	TRINITY_DN1817_c1_g1	2048	2071	2059	-27.90	-19.30	0.691756272401434	10	1-5,2071-2067;6-18,2063-2051	x-x,2066-2064[BULt];19-21,2050-2048[UP3]	...(((((((((((((...(((((&)))))---)))))))))))))...	UCACGUUACCUUUUCUAUCUAGUA&UAUUA---AGAAAAGGUAACGAAG	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a90_TRINITY_DN1817_c1_g1_2059_TPlot.pdf
TRINITY_DN1817_c1_g1:2273	si_s740	TRINITY_DN1817_c1_g1	2260	2282	2273	-35.20	-22.96	0.652272727272727	13	2-11,2281-2272;15-18,2266-2263	1-1,2282-2282[UP5];12-14,2271-2267[AILt];19-21,2262-2260[UP3]	...((((.....((((((((((.&.))))))))))--...))))...	AUUGGUCUGCAGCUAUUCGCCCA&CGGGUGAAUAG--AUUGACCUUA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN1817_c1_g1_2273_TPlot.pdf
TRINITY_DN1817_c2_g1:1592	si_a416	TRINITY_DN1817_c2_g1	1581	1601	1592	-20.50	-14.50	0.707317073170732	3.5	2-14,1600-1588;16-21,1586-1581	1-1,1601-1601[UP5];15-15,1587-1587[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	CUUAUAAUUAUUUAGAUAUAG&UUAUAUUUAAAUAAAUAUAGG	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN1817_c2_g1_1592_TPlot.pdf
TRINITY_DN18186_c0_g2:65	si_a447	TRINITY_DN18186_c0_g2	54	74	65	-25.70	-18.00	0.700389105058366	9	4-19,71-56	1-3,74-72[UP5];20-21,55-54[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUUAGCGACAAUUAUUUCCCA&UAUGAGAUAAUUGUUGUUAUA	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN18186_c0_g2_65_TPlot.pdf
TRINITY_DN18186_c0_g2:66	si_a446	TRINITY_DN18186_c0_g2	55	75	66	-25.50	-18.00	0.705882352941177	10	5-20,71-56	1-4,75-72[UP5];21-21,55-55[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUAGCGACAAUUAUUUCCCAA&AUAUGAGAUAAUUGUUGUUAU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN18186_c0_g2_66_TPlot.pdf
TRINITY_DN18190_c0_g1:460	si_s352	TRINITY_DN18190_c0_g1	448	470	460	-27.20	-17.90	0.658088235294118	5.5	1-4,470-467;5-15,465-455;16-20,453-449	x-x,466-466[BULt];x-x,454-454[BULt];21-21,448-448[UP3]	.(((((.(((((((((((.((((&))))-)))))))))))-))))).	GUCGAUGCUAUUUUUUUAUUCUC&GAGA-UAAAGAAAUAG-AUUGAA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN18190_c0_g1_460_TPlot.pdf
TRINITY_DN18190_c0_g1:96	si_a65	TRINITY_DN18190_c0_g1	85	105	96	-27.70	-22.30	0.805054151624549	4.5	1-18,105-88	19-21,87-85[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAUAUAAUUUGAAAGAAGUGA&UCGCUUCUUUCAAAUUGUUUU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN18190_c0_g1_96_TPlot.pdf
TRINITY_DN18190_c0_g1:99	si_a62	TRINITY_DN18190_c0_g1	88	108	99	-32.20	-22.50	0.698757763975155	6.5	4-21,105-88	1-3,108-106[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUAAUUUGAAAGAAGUGAUUA&GACUCGCUUCUUUCAAAUUGU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN18190_c0_g1_99_TPlot.pdf
TRINITY_DN18194_c0_g1:3809	si_s878	TRINITY_DN18194_c0_g1	3798	3818	3809	-23.50	-16.80	0.714893617021277	9.5	5-21,3814-3798	1-4,3818-3815[UP5]	(((((((((((((((((....&....)))))))))))))))))	CUGUUUAUUUUUGGUUUGGAU&CUUAGAACUAAAAAUAAAUAG	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s878_TRINITY_DN18194_c0_g1_3809_TPlot.pdf
TRINITY_DN18194_c1_g1:1327	si_a375	TRINITY_DN18194_c1_g1	1316	1336	1327	-24.00	-15.60	0.65	7	2-10,1335-1327;12-17,1325-1320	1-1,1336-1336[UP5];11-11,1326-1326[SIL];18-21,1319-1316[UP3]	....((((((.(((((((((.&.))))))))).))))))....	UACAUCGAAAACAUUUUUGAA&AUCAAAAAUGAUUUCGAAUUA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN18194_c1_g1_1327_TPlot.pdf
TRINITY_DN18194_c1_g1:883	si_s84	TRINITY_DN18194_c1_g1	872	892	883	-32.30	-24.20	0.74922600619195	5.5	1-5,892-888;7-21,886-872	6-6,887-887[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	UGGAGAGGAGGAGAGUAAAGA&UCUUUCCUUUCUUCUUCUUCG	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN18194_c1_g1_883_TPlot.pdf
TRINITY_DN18199_c0_g1:461	si_a505	TRINITY_DN18199_c0_g1	445	470	461	-33.30	-22.62	0.679279279279279	15.5	1-12,470-459;14-20,452-446	13-13,458-453[AILt];21-21,445-445[UP3]	.(((((((......((((((((((((&))))))))))))-----.))))))).	AGCGUUCUUGUACCAGGAAGGCGAGA&UUUCGUCUUCCU-----UGGAAUGUA	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN18199_c0_g1_461_TPlot.pdf
TRINITY_DN18199_c0_g1:462	si_a504	TRINITY_DN18199_c0_g1	446	471	462	-32.90	-23.02	0.699696048632219	9.5	1-13,471-459;15-21,452-446	14-14,458-453[AILt]	(((((((......(((((((((((((&)))))))))))))-----.)))))))	GCGUUCUUGUACCAGGAAGGCGAGAA&UUUUCGUCUUCCU-----UGGAAUGU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN18199_c0_g1_462_TPlot.pdf
TRINITY_DN18199_c0_g1:463	si_a503	TRINITY_DN18199_c0_g1	447	472	463	-32.10	-21.82	0.679750778816199	10	2-14,471-459;16-21,452-447	1-1,472-472[UP5];15-15,458-453[AILt]	((((((......(((((((((((((.&.)))))))))))))-----.))))))	CGUUCUUGUACCAGGAAGGCGAGAAG&UUUUUCGUCUUCCU-----UGGAAUG	2	0.999116901745928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN18199_c0_g1_463_TPlot.pdf
TRINITY_DN18199_c0_g1:464	si_a502	TRINITY_DN18199_c0_g1	454	473	464	-32.10	-21.90	0.682242990654206	8	2-15,472-459;17-18,458-457	1-1,473-473[UP5];16-16,x-x[BULq];19-21,456-454[UP3]	...((-((((((((((((((.&.)))))))))))))).))...	GUACC-AGGAAGGCGAGAAGA&GUUUUUCGUCUUCCUUGGAAU	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN18199_c0_g1_464_TPlot.pdf
TRINITY_DN18199_c0_g1:465	si_a501	TRINITY_DN18199_c0_g1	455	474	465	-33.50	-21.90	0.653731343283582	9	3-16,472-459;18-19,458-457	1-2,474-473[UP5];17-17,x-x[BULq];20-21,456-455[UP3]	..((-((((((((((((((..&..)))))))))))))).))..	UACC-AGGAAGGCGAGAAGAA&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999999895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN18199_c0_g1_465_TPlot.pdf
TRINITY_DN18199_c0_g1:468	si_s77	TRINITY_DN18199_c0_g1	457	477	468	-25.50	-18.50	0.725490196078431	6.5	1-11,477-467;13-19,465-459	12-12,466-466[SIL];20-21,458-457[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CCAGGAAGGCGAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999973912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN18199_c0_g1_468_TPlot.pdf
TRINITY_DN18199_c0_g1:469	si_s76	TRINITY_DN18199_c0_g1	458	478	469	-23.60	-18.50	0.783898305084746	5.5	2-12,477-467;14-20,465-459	1-1,478-478[UP5];13-13,466-466[SIL];21-21,458-458[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	CAGGAAGGCGAGAAGAAAAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999997391856114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18199_c0_g1_469_TPlot.pdf
TRINITY_DN18199_c0_g1:470	si_s75	TRINITY_DN18199_c0_g1	459	479	470	-24.00	-18.50	0.770833333333333	6	3-13,477-467;15-21,465-459	1-2,479-478[UP5];14-14,466-466[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AGGAAGGCGAGAAGAAAAAAA&UAUUUUUUUUCUUUCCUUUCU	2	0.999960180951311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18199_c0_g1_470_TPlot.pdf
TRINITY_DN18199_c0_g1:474	si_s74	TRINITY_DN18199_c0_g1	460	483	474	-25.00	-17.70	0.708	6	1-3,483-481;5-15,479-469;16-21,465-460	4-4,480-480[SIL];x-x,468-466[BULt]	((((((...(((((((((((.(((&))).)))))))))))---))))))	GGAAGGCGAGAAGAAAAAAAUUAG&CUAUUUUUUUUCUUU---CCUUUC	2	0.999999992004052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN18199_c0_g1_474_TPlot.pdf
TRINITY_DN18199_c0_g1:475	si_s73	TRINITY_DN18199_c0_g1	461	484	475	-24.00	-16.80	0.7	6	1-4,484-481;6-16,479-469;17-21,465-461	5-5,480-480[SIL];x-x,468-466[BULt]	(((((...(((((((((((.((((&)))).)))))))))))---)))))	GAAGGCGAGAAGAAAAAAAUUAGA&UCUAUUUUUUUUCUUU---CCUUU	2	0.999999999999767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN18199_c0_g1_475_TPlot.pdf
TRINITY_DN18199_c0_g1:504	si_s78	TRINITY_DN18199_c0_g1	490	513	504	-26.20	-17.10	0.652671755725191	7	2-11,512-503;12-17,500-495;18-21,493-490	1-1,513-513[UP5];x-x,502-501[BULt];x-x,494-494[BULt]	((((.((((((..((((((((((.&.))))))))))--))))))-))))	GGAACGAGAGGUCAAAGAAAAAAU&UUUUUUUCUUU--CCUUUC-UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN18199_c0_g1_504_TPlot.pdf
TRINITY_DN18199_c0_g1:715	si_s437	TRINITY_DN18199_c0_g1	704	724	715	-19.70	-15.30	0.776649746192894	6	1-14,724-711;17-19,708-706	15-16,710-709[SIL];20-21,705-704[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UAAUAGUUAAUAUGUAGUUGU&AUAAUUACAUAUUAUAUAUAA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN18199_c0_g1_715_TPlot.pdf
TRINITY_DN18199_c0_g1:716	si_s436	TRINITY_DN18199_c0_g1	705	725	716	-19.60	-15.50	0.790816326530612	6	2-15,724-711;18-20,708-706	1-1,725-725[UP5];16-17,710-709[SIL];21-21,705-705[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	AAUAGUUAAUAUGUAGUUGUA&AAUAAUUACAUAUUAUAUAUA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN18199_c0_g1_716_TPlot.pdf
TRINITY_DN18199_c0_g1:717	si_s435	TRINITY_DN18199_c0_g1	706	726	717	-20.90	-15.20	0.727272727272727	7	3-16,724-711;19-21,708-706	1-2,726-725[UP5];17-18,710-709[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	AUAGUUAAUAUGUAGUUGUAU&CAAUAAUUACAUAUUAUAUAU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN18199_c0_g1_717_TPlot.pdf
TRINITY_DN18199_c0_g1:718	si_s434	TRINITY_DN18199_c0_g1	707	727	718	-21.50	-14.00	0.651162790697674	9	4-17,724-711;20-21,708-707	1-3,727-725[UP5];18-19,710-709[SIL]	((..((((((((((((((...&...))))))))))))))..))	UAGUUAAUAUGUAGUUGUAUU&ACAAUAAUUACAUAUUAUAUA	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN18199_c0_g1_718_TPlot.pdf
TRINITY_DN1819_c0_g1:189	si_s533	TRINITY_DN1819_c0_g1	178	199	189	-28.80	-19.80	0.6875	9.5	3-5,197-195;6-15,193-184;17-20,182-179	1-2,199-198[UP5];x-x,194-194[BULt];16-16,183-183[SIL];21-21,178-178[UP3]	.((((.((((((((((.(((..&..)))-)))))))))).)))).	GUGAUGGGGUCAGAGAGUGAAG&AAUCA-UUUUUGAUCCGAUCAA	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN1819_c0_g1_189_TPlot.pdf
TRINITY_DN1819_c0_g1:20	si_a546	TRINITY_DN1819_c0_g1	6	29	20	-28.60	-20.12	0.703496503496504	6	1-14,29-16;17-21,10-6	15-16,15-11[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN1819_c0_g1_20_TPlot.pdf
TRINITY_DN181_c1_g1:1127	si_a899	TRINITY_DN181_c1_g1	1116	1136	1127	-18.70	-14.20	0.759358288770054	5.5	3-6,1134-1131;8-21,1129-1116	1-2,1136-1135[UP5];7-7,1130-1130[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UUUUUAUGUUACUUUUUAUGC&UAAUAAUAAGUAAUAUAAAAA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN181_c1_g1_1127_TPlot.pdf
TRINITY_DN181_c1_g1:1128	si_a898	TRINITY_DN181_c1_g1	1117	1136	1128	-20.50	-13.50	0.658536585365854	5.5	1-3,1136-1134;5-7,1133-1131;9-21,1129-1117	4-4,x-x[BULq];8-8,1130-1130[SIL]	(((((((((((((.(((-(((&))).))).)))))))))))))	UUUUAUGUUACUUUUUA-UGC&GUAAUAAUAAGUAAUAUAAAA	2	0.978631982609921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN181_c1_g1_1128_TPlot.pdf
TRINITY_DN181_c1_g1:1129	si_a897	TRINITY_DN181_c1_g1	1118	1137	1129	-21.20	-14.00	0.660377358490566	5.5	1-4,1137-1134;6-8,1133-1131;10-21,1129-1118	5-5,x-x[BULq];9-9,1130-1130[SIL]	((((((((((((.(((-((((&)))).))).))))))))))))	UUUAUGUUACUUUUUA-UGCU&AGUAAUAAUAAGUAAUAUAAA	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN181_c1_g1_1129_TPlot.pdf
TRINITY_DN181_c1_g1:1130	si_a896	TRINITY_DN181_c1_g1	1119	1138	1130	-21.60	-14.40	0.666666666666667	5.5	1-5,1138-1134;7-9,1133-1131;11-21,1129-1119	6-6,x-x[BULq];10-10,1130-1130[SIL]	(((((((((((.(((-(((((&))))).))).)))))))))))	UUAUGUUACUUUUUA-UGCUA&UAGUAAUAAUAAGUAAUAUAA	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN181_c1_g1_1130_TPlot.pdf
TRINITY_DN181_c1_g1:1171	si_a885	TRINITY_DN181_c1_g1	1160	1180	1171	-25.60	-17.60	0.6875	5	1-6,1180-1175;8-18,1173-1163	7-7,1174-1174[SIL];19-21,1162-1160[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UGGAUUACUAUAUUUAUUGCA&UGCAAUCAAUAUAGUAAUAAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN181_c1_g1_1171_TPlot.pdf
TRINITY_DN181_c1_g1:1172	si_a884	TRINITY_DN181_c1_g1	1161	1181	1172	-25.60	-17.80	0.6953125	5	2-7,1180-1175;9-19,1173-1163	1-1,1181-1181[UP5];8-8,1174-1174[SIL];20-21,1162-1161[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	GGAUUACUAUAUUUAUUGCAU&UUGCAAUCAAUAUAGUAAUAA	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN181_c1_g1_1172_TPlot.pdf
TRINITY_DN181_c1_g1:1173	si_a883	TRINITY_DN181_c1_g1	1162	1182	1173	-27.20	-17.80	0.654411764705882	6	3-8,1180-1175;10-20,1173-1163	1-2,1182-1181[UP5];9-9,1174-1174[SIL];21-21,1162-1162[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	GAUUACUAUAUUUAUUGCAUG&GUUGCAAUCAAUAUAGUAAUA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN181_c1_g1_1173_TPlot.pdf
TRINITY_DN181_c1_g1:1205	si_s693	TRINITY_DN181_c1_g1	1194	1214	1205	-23.90	-15.90	0.665271966527197	5	1-15,1214-1200;17-19,1198-1196	16-16,1199-1199[SIL];20-21,1195-1194[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UUAUGUGUUGACUAAUUAAAU&GUUUAAUUAGUCGAUUUAUUA	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN181_c1_g1_1205_TPlot.pdf
TRINITY_DN1821_c0_g1:260	si_s37	TRINITY_DN1821_c0_g1	251	269	260	-24.40	-16.80	0.688524590163935	5	1-14,269-256;17-19,255-253	15-16,x-x[BULq];20-21,252-251[UP3]	..(((--((((((((((((((&))))))))))))))..)))..	AGCCA--UAUUAAAGGUUUAG&CUAAAUCUUUAAUAAUUGGAU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN1821_c0_g1_260_TPlot.pdf
TRINITY_DN1821_c0_g1:261	si_s36	TRINITY_DN1821_c0_g1	252	270	261	-25.00	-17.00	0.68	5	2-15,269-256;18-20,255-253	1-1,270-270[UP5];16-17,x-x[BULq];21-21,252-252[UP3]	.(((--((((((((((((((.&.))))))))))))))..))).	GCCA--UAUUAAAGGUUUAGG&ACUAAAUCUUUAAUAAUUGGA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN1821_c0_g1_261_TPlot.pdf
TRINITY_DN1821_c0_g1:262	si_s35	TRINITY_DN1821_c0_g1	253	271	262	-24.00	-16.80	0.7	6	3-16,269-256;19-21,255-253	1-2,271-270[UP5];17-18,x-x[BULq]	(((--((((((((((((((..&..))))))))))))))..)))	CCA--UAUUAAAGGUUUAGGU&AACUAAAUCUUUAAUAAUUGG	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN1821_c0_g1_262_TPlot.pdf
TRINITY_DN18224_c0_g1:284	si_a787	TRINITY_DN18224_c0_g1	273	293	284	-26.30	-18.50	0.703422053231939	6	1-4,293-290;6-19,288-275	5-5,289-289[SIL];20-21,274-273[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAGAAAAUAGAAGAAUUGGAG&CUUCUAUUUUUCUAUUUUCCA	3	0.999999734700928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN18224_c0_g1_284_TPlot.pdf
TRINITY_DN18227_c0_g1:223	si_a341	TRINITY_DN18227_c0_g1	212	232	223	-27.80	-18.70	0.672661870503597	13	1-10,232-223	11-21,222-212[UP3]	...........((((((((((&))))))))))...........	UUUGGCGGUCGUCGGGACAAG&CUUGUCCCGAAAAUAUUAAUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN18227_c0_g1_223_TPlot.pdf
TRINITY_DN1822_c0_g2:1211	si_s800	TRINITY_DN1822_c0_g2	1200	1219	1211	-29.70	-19.60	0.65993265993266	7.5	1-3,1219-1217;5-17,1216-1204;19-20,1202-1201	4-4,x-x[BULq];18-18,1203-1203[SIL];21-21,1200-1200[UP3]	.((.(((((((((((((-(((&))).))))))))))))).)).	UGGAGGCGGAGAUAGAG-ACG&CGUAUUUUAUCUUCGUUACCU	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN1822_c0_g2_1211_TPlot.pdf
TRINITY_DN18246_c2_g1:135	si_a106	TRINITY_DN18246_c2_g1	124	144	135	-31.20	-20.80	0.666666666666667	3.5	2-16,143-129;19-21,126-124	1-1,144-144[UP5];17-18,128-127[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	CAAUGUUGUAUUUUAUCUUCU&CGAAGAUAAAAUACGAGCUUG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a106_TRINITY_DN18246_c2_g1_135_TPlot.pdf
TRINITY_DN18247_c0_g1:137	si_a472	TRINITY_DN18247_c0_g1	126	146	137	-21.50	-14.50	0.674418604651163	12	4-17,143-130	1-3,146-144[UP5];18-21,129-126[UP3]	....((((((((((((((...&...))))))))))))))....	UCGUUAGCGAUAGUUGCAAUA&AUAUGUAAUUAUUGUUAUAUA	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN18247_c0_g1_137_TPlot.pdf
TRINITY_DN18247_c0_g1:139	si_a470	TRINITY_DN18247_c0_g1	128	148	139	-21.30	-14.50	0.68075117370892	14	6-19,143-130	1-5,148-144[UP5];20-21,129-128[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUAGCGAUAGUUGCAAUAAA&UAAUAUGUAAUUAUUGUUAUA	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN18247_c0_g1_139_TPlot.pdf
TRINITY_DN18247_c0_g1:140	si_a469	TRINITY_DN18247_c0_g1	129	149	140	-21.10	-14.50	0.687203791469194	15	7-20,143-130	1-6,149-144[UP5];21-21,129-129[UP3]	.((((((((((((((......&......)))))))))))))).	UUAGCGAUAGUUGCAAUAAAC&AUAAUAUGUAAUUAUUGUUAU	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN18247_c0_g1_140_TPlot.pdf
TRINITY_DN18247_c0_g1:999	si_a153	TRINITY_DN18247_c0_g1	985	1008	999	-28.70	-19.20	0.668989547038327	12	1-10,1008-999;11-11,995-995;13-21,993-985	x-x,998-996[BULt];12-12,994-994[SIL]	(((((((((.(...((((((((((&))))))))))---).)))))))))	AUAGAUUGAGUAAUUUGAAGCAGC&GUUGUUUUAA---GGUCAAUCUAU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN18247_c0_g1_999_TPlot.pdf
TRINITY_DN18248_c2_g1:583	si_a665	TRINITY_DN18248_c2_g1	571	593	583	-29.60	-19.60	0.662162162162162	11	4-6,590-588;7-10,586-583;11-21,581-571	1-3,593-591[UP5];x-x,587-587[BULt];x-x,582-582[BULt]	(((((((((((.((((.(((...&...)))-))))-)))))))))))	GAUGGGGGAUCAAAUAUGGCGAA&AAUGCC-UAUU-GAUUCCUUAUU	2	0.997456340380309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN18248_c2_g1_583_TPlot.pdf
TRINITY_DN1825_c0_g1:2915	si_a498	TRINITY_DN1825_c0_g1	2904	2931	2915	-33.50	-22.80	0.680597014925373	20	2-5,2930-2927;6-20,2919-2905	1-1,2931-2931[UP5];x-x,2926-2920[BULt];21-21,2904-2904[UP3]	.(((((((((((((((.......((((.&.))))-------))))))))))))))).	UGAGGAGGACGAAGGGACCGGAUCGACU&UGUCG-------UUUUUCGUCUUCCUUG	3	0.999999977095107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1825_c0_g1_2915_TPlot.pdf
TRINITY_DN1825_c0_g1:3096	si_a309	TRINITY_DN1825_c0_g1	3085	3109	3096	-33.60	-23.20	0.69047619047619	12.5	1-6,3109-3104;7-18,3099-3088	x-x,3103-3100[BULt];19-21,3087-3085[UP3]	...((((((((((((....((((((&))))))----))))))))))))...	CGCUGGGUAAGUCCAAAUGAGCGAA&UUCGCU----UGGAUUUAUCCAUGA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN1825_c0_g1_3096_TPlot.pdf
TRINITY_DN1826_c0_g1:2318	si_a122	TRINITY_DN1826_c0_g1	2308	2327	2318	-29.00	-19.10	0.658620689655173	6.5	1-14,2327-2314;17-21,2312-2308	15-16,2313-2313[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UAUUGG-GCUAUGAAACGGGU&GCUUGUUUUAUAGCAAUAGUA	2	0.989223615669991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN1826_c0_g1_2318_TPlot.pdf
TRINITY_DN1826_c0_g1:3323	si_s188	TRINITY_DN1826_c0_g1	3309	3332	3323	-28.20	-19.80	0.702127659574468	8.5	1-9,3332-3324;11-15,3322-3318;16-19,3314-3311	10-10,3323-3323[SIL];x-x,3317-3315[BULt];20-21,3310-3309[UP3]	..((((...(((((.(((((((((&))))))))).)))))---))))..	AAUCCAUAGGAAUGUUCGUUACUC&GAGUAACGAUUAUUU---UGGAAU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN1826_c0_g1_3323_TPlot.pdf
TRINITY_DN1826_c0_g1:363	si_a897	TRINITY_DN1826_c0_g1	352	375	363	-21.20	-15.80	0.745283018867925	11	2-4,374-372;5-20,368-353	1-1,375-375[UP5];x-x,371-369[BULt];21-21,352-352[UP3]	.((((((((((((((((...(((.&.)))---)))))))))))))))).	GUUGUGUUACUUAUUGUAGAUGCA&AGUA---AUAAUAAGUAAUAUAAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN1826_c0_g1_363_TPlot.pdf
TRINITY_DN1826_c0_g1:365	si_a895	TRINITY_DN1826_c0_g1	354	377	365	-21.70	-14.80	0.682027649769585	14	4-6,374-372;7-21,368-354	1-3,377-375[UP5];x-x,371-369[BULt]	(((((((((((((((...(((...&...)))---)))))))))))))))	UGUGUUACUUAUUGUAGAUGCAUU&AUAGUA---AUAAUAAGUAAUAUA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN1826_c0_g1_365_TPlot.pdf
TRINITY_DN18271_c3_g1:89	si_a79	TRINITY_DN18271_c3_g1	77	98	89	-22.20	-15.90	0.716216216216216	7.5	2-15,97-84;17-19,81-79	1-1,98-98[UP5];16-16,83-82[AILt];20-21,78-77[UP3]	..(((..((((((((((((((.&.))))))))))))))-.)))..	AAUCUGGAGUGGUGAAAAACAG&UUGUUUUUCAUUAUU-AAGAAA	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN18271_c3_g1_89_TPlot.pdf
TRINITY_DN18272_c0_g1:1979	si_a66	TRINITY_DN18272_c0_g1	1968	1989	1979	-26.70	-19.80	0.741573033707865	4.5	1-5,1989-1985;6-14,1983-1975;16-20,1973-1969	x-x,1984-1984[BULt];15-15,1974-1974[SIL];21-21,1968-1968[UP3]	.(((((.(((((((((.(((((&)))))-))))))))).))))).	CAAAGCUAUUUGAAAGUAAGCG&CGCUU-CUUUCAAAUUGUUUUU	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN18272_c0_g1_1979_TPlot.pdf
TRINITY_DN18277_c0_g1:1116	si_a410	TRINITY_DN18277_c0_g1	1105	1125	1116	-17.80	-13.00	0.730337078651685	9	2-16,1124-1110	1-1,1125-1125[UP5];17-21,1109-1105[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGAAAUUGGAUAUGAGCAAAU&UUUUGUUUAUAUUUAAAUAAA	4	0.999901665387931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN18277_c0_g1_1116_TPlot.pdf
TRINITY_DN1827_c0_g1:2469	si_a320	TRINITY_DN1827_c0_g1	2456	2477	2469	-24.40	-16.70	0.684426229508197	7.5	1-7,2477-2471;9-15,2470-2464;16-21,2461-2456	8-8,x-x[BULq];x-x,2463-2462[BULt]	((((((..(((((((-(((((((&))))))).)))))))--))))))	GAGUAGAGGAAAGUC-UGGAUGA&UUAUCCAUGAUUUUU--UUAUUC	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1827_c0_g1_2469_TPlot.pdf
TRINITY_DN1827_c0_g1:2997	si_a370	TRINITY_DN1827_c0_g1	2986	3006	2997	-29.50	-20.40	0.691525423728814	5.5	1-7,3006-3000;10-20,2997-2987	8-9,2999-2998[SIL];21-21,2986-2986[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	AGAAAUUAUUUUGAAUCCGAU&AUCGGAUCAAAAAUGAUUUCG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN1827_c0_g1_2997_TPlot.pdf
TRINITY_DN1827_c0_g1:2998	si_a369	TRINITY_DN1827_c0_g1	2987	3007	2998	-30.00	-20.40	0.68	5.5	2-8,3006-3000;11-21,2997-2987	1-1,3007-3007[UP5];9-10,2999-2998[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	GAAAUUAUUUUGAAUCCGAUG&GAUCGGAUCAAAAAUGAUUUC	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN1827_c0_g1_2998_TPlot.pdf
TRINITY_DN1827_c0_g1:3000	si_a438	TRINITY_DN1827_c0_g1	2989	3009	3000	-31.70	-20.70	0.652996845425867	6	1-10,3009-3000;12-21,2998-2989	11-11,2999-2999[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AAUUAUUUUGAAUCCGAUGGA&UCCGUUGGAUAUGAGAUAAUU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN1827_c0_g1_3000_TPlot.pdf
TRINITY_DN1827_c0_g1:3032	si_a760	TRINITY_DN1827_c0_g1	3020	3041	3032	-31.10	-20.30	0.652733118971061	5.5	1-6,3041-3036;8-14,3034-3028;15-16,3026-3025;18-20,3023-3021	7-7,3035-3035[SIL];x-x,3027-3027[BULt];17-17,3024-3024[SIL];21-21,3020-3020[UP3]	.(((.((.(((((((.((((((&)))))).)))))))-)).))).	UUCAUUCUGAAAACCGAAAGGA&UCCUUUGGGUUUUU-GAUUGAU	2	0.999997487444489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN1827_c0_g1_3032_TPlot.pdf
TRINITY_DN18282_c0_g3:70	si_s328	TRINITY_DN18282_c0_g3	58	79	70	-30.40	-20.50	0.674342105263158	6	2-7,78-73;9-14,71-66;15-20,64-59	1-1,79-79[UP5];8-8,72-72[SIL];x-x,65-65[BULt];21-21,58-58[UP3]	.((((((.((((((.((((((.&.)))))).))))))-)))))).	UUGAAUCUGUGUGUCUGUAACU&UGUUACAAACAUAC-GAUUCAC	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s328_TRINITY_DN18282_c0_g3_70_TPlot.pdf
TRINITY_DN18283_c0_g2:1653	si_s275	TRINITY_DN18283_c0_g2	1641	1662	1653	-30.60	-19.90	0.650326797385621	14.5	7-16,1656-1647;17-20,1645-1642	1-6,1662-1657[UP5];x-x,1646-1646[BULt];21-21,1641-1641[UP3]	.((((.((((((((((......&......))))))))))-)))).	AGGGCUGUAUUGUGUCACCGAU&AAAAUCGACAUAAUAC-GCCUA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s275_TRINITY_DN18283_c0_g2_1653_TPlot.pdf
TRINITY_DN18285_c0_g1:172	si_s735	TRINITY_DN18285_c0_g1	161	181	172	-35.50	-24.56	0.691830985915493	7	1-11,181-171;16-21,166-161	12-15,170-167[SIL]	((((((....(((((((((((&)))))))))))....))))))	UCGGUCCAAGCACCUGUCUAG&CUAGACGGGUGAAUAGAUUGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s735_TRINITY_DN18285_c0_g1_172_TPlot.pdf
TRINITY_DN18286_c0_g1:519	si_s99	TRINITY_DN18286_c0_g1	507	528	519	-34.60	-22.80	0.658959537572254	9.5	1-12,528-517;14-18,514-510	13-13,516-515[AILt];19-21,509-507[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	AUCUCCGACAUCGAAGCGGGGA&UCUUCGCUUCGG-AUUGGAAAA	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN18286_c0_g1_519_TPlot.pdf
TRINITY_DN18286_c0_g1:656	si_a782	TRINITY_DN18286_c0_g1	645	666	656	-26.40	-17.60	0.666666666666667	9.5	4-8,663-659;9-21,657-645	1-3,666-664[UP5];x-x,658-658[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GAUAGGGAAAUAGCAAGGGACA&CAACUCUU-CUAUUUUUCUAUU	4	0.99999997500826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN18286_c0_g1_656_TPlot.pdf
TRINITY_DN1828_c0_g1:1126	si_a177	TRINITY_DN1828_c0_g1	1114	1135	1126	-32.90	-24.50	0.74468085106383	6	2-3,1134-1133;5-19,1131-1117;20-21,1115-1114	1-1,1135-1135[UP5];4-4,1132-1132[SIL];x-x,1116-1116[BULt]	((.(((((((((((((((.((.&.)).)))))))))))))))-))	GAUGAGAUGUUGUCUAGAGGGU&CCCGUCUAGAUAAUAUCUU-UC	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a177_TRINITY_DN1828_c0_g1_1126_TPlot.pdf
TRINITY_DN1828_c0_g1:1443	si_a797	TRINITY_DN1828_c0_g1	1433	1452	1443	-34.10	-24.30	0.712609970674487	6	1-4,1452-1449;6-15,1447-1438;19-21,1435-1433	5-5,1448-1448[SIL];16-18,1437-1436[AILq]	(((..-((((((((((.((((&)))).))))))))))...)))	CGCGA-GGAUUGGAAAUUGGA&UCUAUUUUCCAAUCCGAAGCG	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a797_TRINITY_DN1828_c0_g1_1443_TPlot.pdf
TRINITY_DN1828_c0_g1:1446	si_a794	TRINITY_DN1828_c0_g1	1435	1455	1446	-28.60	-20.90	0.730769230769231	7	2-7,1454-1449;9-18,1447-1438	1-1,1455-1455[UP5];8-8,1448-1448[SIL];19-21,1437-1435[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	CGAGGAUUGGAAAUUGGAAAC&UUUUCUAUUUUCCAAUCCGAA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN1828_c0_g1_1446_TPlot.pdf
TRINITY_DN1828_c0_g1:1769	si_a734	TRINITY_DN1828_c0_g1	1758	1778	1769	-42.40	-27.60	0.650943396226415	8	2-6,1777-1773;9-12,1770-1767;14-20,1765-1759	1-1,1778-1778[UP5];7-8,1772-1771[SIL];13-13,1766-1766[SIL];21-21,1758-1758[UP3]	.(((((((.((((..(((((.&.)))))..)))).))))))).	UUGGCCAGAGGUAUUGAUGUA&GGCAUCUUUACCCCUGGCCAU	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN1828_c0_g1_1769_TPlot.pdf
TRINITY_DN1828_c0_g1:1853	si_s370	TRINITY_DN1828_c0_g1	1840	1862	1853	-43.70	-28.60	0.654462242562929	6.5	1-11,1862-1852;12-14,1850-1848;15-15,1846-1846;18-21,1843-1840	x-x,1851-1851[BULt];x-x,1847-1847[BULt];16-17,1845-1844[SIL]	((((..(.(((.(((((((((((&)))))))))))-)))-)..))))	GGAUUGGUCGAGGCGGUCGGUUC&GAACCGAUCGC-UCG-CGUGUCC	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s370_TRINITY_DN1828_c0_g1_1853_TPlot.pdf
TRINITY_DN1828_c0_g1:1859	si_s364	TRINITY_DN1828_c0_g1	1846	1868	1859	-38.50	-29.00	0.753246753246753	7.5	3-17,1866-1852;18-20,1850-1848;21-21,1846-1846	1-2,1868-1867[UP5];x-x,1851-1851[BULt];x-x,1847-1847[BULt]	(.(((.(((((((((((((((..&..)))))))))))))))-)))-)	GUCGAGGCGGUCGGUUCGGUCGU&UAGAUUGAACCGAUCGC-UCG-C	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s364_TRINITY_DN1828_c0_g1_1859_TPlot.pdf
TRINITY_DN1828_c0_g1:1860	si_s363	TRINITY_DN1828_c0_g1	1848	1869	1860	-36.20	-28.90	0.798342541436464	8.5	4-18,1866-1852;19-21,1850-1848	1-3,1869-1867[UP5];x-x,1851-1851[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	CGAGGCGGUCGGUUCGGUCGUA&AUAGAUUGAACCGAUCGC-UCG	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s363_TRINITY_DN1828_c0_g1_1860_TPlot.pdf
TRINITY_DN1828_c0_g1:1861	si_s362	TRINITY_DN1828_c0_g1	1850	1870	1861	-34.70	-27.60	0.795389048991354	11	5-20,1866-1851	1-4,1870-1867[UP5];21-21,1850-1850[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGGCGGUCGGUUCGGUCGUAA&AAUAGAUUGAACCGAUCGCUC	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN1828_c0_g1_1861_TPlot.pdf
TRINITY_DN1828_c0_g1:1863	si_s360	TRINITY_DN1828_c0_g1	1852	1872	1863	-34.00	-26.30	0.773529411764706	13.5	7-21,1866-1852	1-6,1872-1867[UP5]	(((((((((((((((......&......)))))))))))))))	GCGGUCGGUUCGGUCGUAAGG&GAAAUAGAUUGAACCGAUCGC	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s360_TRINITY_DN1828_c0_g1_1863_TPlot.pdf
TRINITY_DN1828_c0_g1:1903	si_a498	TRINITY_DN1828_c0_g1	1892	1913	1903	-33.50	-22.20	0.662686567164179	9	2-3,1912-1911;4-8,1909-1905;10-18,1903-1895	1-1,1913-1913[UP5];x-x,1910-1910[BULt];9-9,1904-1904[SIL];19-21,1894-1892[UP3]	...(((((((((.(((((.((.&.))-))))).)))))))))...	UACGGAAGACGACAAGCGCACG&UGU-CGUUUUUCGUCUUCCUUG	4	0.999999999999798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1828_c0_g1_1903_TPlot.pdf
TRINITY_DN1828_c0_g1:1904	si_a497	TRINITY_DN1828_c0_g1	1893	1914	1904	-32.00	-22.20	0.69375	10	3-4,1912-1911;5-9,1909-1905;11-19,1903-1895	1-2,1914-1913[UP5];x-x,1910-1910[BULt];10-10,1904-1904[SIL];20-21,1894-1893[UP3]	..(((((((((.(((((.((..&..))-))))).)))))))))..	ACGGAAGACGACAAGCGCACGC&AUGU-CGUUUUUCGUCUUCCUU	3	0.999999994217894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1828_c0_g1_1904_TPlot.pdf
TRINITY_DN1828_c0_g1:1906	si_a495	TRINITY_DN1828_c0_g1	1895	1916	1906	-31.90	-21.90	0.686520376175549	12	5-6,1912-1911;7-11,1909-1905;13-21,1903-1895	1-4,1916-1913[UP5];x-x,1910-1910[BULt];12-12,1904-1904[SIL]	(((((((((.(((((.((....&....))-))))).)))))))))	GGAAGACGACAAGCGCACGCUU&AUAUGU-CGUUUUUCGUCUUCC	2	0.999442797370729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN1828_c0_g1_1906_TPlot.pdf
TRINITY_DN1828_c0_g1:2632	si_s582	TRINITY_DN1828_c0_g1	2621	2641	2632	-22.50	-15.70	0.697777777777778	10.5	6-21,2636-2621	1-5,2641-2637[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUUUAUUCGUGAUUUUCUCCA&AUAAAAAAAUCAUGGAUAAAU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN1828_c0_g1_2632_TPlot.pdf
TRINITY_DN1830_c0_g1:378	si_a790	TRINITY_DN1830_c0_g1	367	387	378	-25.80	-17.40	0.674418604651163	6.5	2-10,386-378;12-20,376-368	1-1,387-387[UP5];11-11,377-377[SIL];21-21,367-367[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UAUUGGAGAAAGGAAAAGUAU&CUAUUUUUCUAUUUUCCAAUC	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN1830_c0_g1_378_TPlot.pdf
TRINITY_DN1830_c0_g1:379	si_a789	TRINITY_DN1830_c0_g1	368	388	379	-24.80	-17.40	0.701612903225806	7.5	3-11,386-378;13-21,376-368	1-2,388-387[UP5];12-12,377-377[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUUGGAGAAAGGAAAAGUAUU&UCUAUUUUUCUAUUUUCCAAU	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1830_c0_g1_379_TPlot.pdf
TRINITY_DN1830_c0_g1:722	si_s84	TRINITY_DN1830_c0_g1	711	731	722	-32.30	-22.20	0.687306501547988	6	2-16,730-716;18-20,714-712	1-1,731-731[UP5];17-17,715-715[SIL];21-21,711-711[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UGAACAGGGAGAAGGGGAAGU&UCUUUCCUUUCUUCUUCUUCG	3	0.999999999999953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1830_c0_g1_722_TPlot.pdf
TRINITY_DN1830_c0_g2:129	si_s76	TRINITY_DN1830_c0_g2	117	138	129	-23.60	-16.00	0.677966101694915	10.5	5-18,134-121;19-20,119-118	1-4,138-135[UP5];x-x,120-120[BULt];21-21,117-117[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	CGGAAAAGGAAAGAAAAGUGUC&AUUUUUUUUCUUUCCUUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1830_c0_g2_129_TPlot.pdf
TRINITY_DN18322_c0_g1:141	si_s84	TRINITY_DN18322_c0_g1	125	150	141	-32.30	-26.30	0.814241486068112	11.5	1-10,150-141;11-21,135-125	x-x,140-136[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	CGGAGAAGAAGUAAGAAGAGGAAAGA&UCUUUCCUUU-----CUUCUUCUUCG	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN18322_c0_g1_141_TPlot.pdf
TRINITY_DN1832_c0_g1:1119	si_a868	TRINITY_DN1832_c0_g1	1108	1128	1119	-24.80	-18.60	0.75	5	1-11,1128-1118;13-19,1116-1110	12-12,1117-1117[SIL];20-21,1109-1108[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UACAACUAAUUCUUUGAUAAU&AUUAUUAAAGAUUUAGUUGCA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN1832_c0_g1_1119_TPlot.pdf
TRINITY_DN1832_c0_g1:1120	si_a867	TRINITY_DN1832_c0_g1	1109	1129	1120	-24.10	-18.80	0.780082987551867	4	2-12,1128-1118;14-20,1116-1110	1-1,1129-1129[UP5];13-13,1117-1117[SIL];21-21,1109-1109[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	ACAACUAAUUCUUUGAUAAUA&AAUUAUUAAAGAUUUAGUUGC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN1832_c0_g1_1120_TPlot.pdf
TRINITY_DN18337_c0_g2:430	si_a317	TRINITY_DN18337_c0_g2	419	443	430	-24.30	-16.40	0.674897119341564	13.5	1-6,443-438;7-11,433-429;13-20,427-420	x-x,437-434[BULt];12-12,428-428[SIL];21-21,419-419[UP3]	.((((((((.(((((....((((((&))))))----))))).)))))))).	GAAGAAAAUGGUGGAUCAGUAAGUC&GAUUUA----UCCAUGAUUUUUUUA	2	0.999954903398162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN18337_c0_g2_430_TPlot.pdf
TRINITY_DN18337_c0_g4:27	si_a546	TRINITY_DN18337_c0_g4	13	36	27	-28.60	-20.12	0.703496503496504	6	1-14,36-23;17-21,17-13	15-16,22-18[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN18337_c0_g4_27_TPlot.pdf
TRINITY_DN18337_c0_g4:28	si_a545	TRINITY_DN18337_c0_g4	17	37	28	-28.10	-18.60	0.661921708185053	8	2-15,36-23	1-1,37-37[UP5];16-21,22-17[UP3]	......((((((((((((((.&.))))))))))))))......	AUCUGUAAAUAGAUUGAGCCC&CGGUUCAAUCUAUUUCUUUAU	3	0.999951779956384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN18337_c0_g4_28_TPlot.pdf
TRINITY_DN18337_c0_g5:777	si_s490	TRINITY_DN18337_c0_g5	766	787	777	-17.80	-11.70	0.657303370786517	9.5	1-6,787-782;7-17,780-770	x-x,781-781[BULt];18-21,769-766[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	ACGGGUUUGUAUUUGAAGUAGA&UUUAUU-UAAAUAUAAACAAAA	1	0.114166940946809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN18337_c0_g5_777_TPlot.pdf
TRINITY_DN1833_c0_g1:1327	si_a675	TRINITY_DN1833_c0_g1	1315	1337	1327	-34.00	-22.20	0.652941176470588	8.5	2-6,1336-1332;7-14,1330-1323;15-20,1321-1316	1-1,1337-1337[UP5];x-x,1331-1331[BULt];x-x,1322-1322[BULt];21-21,1315-1315[UP3]	.((((((.((((((((.(((((.&.)))))-))))))))-)))))).	CGGCUGCUGUGAAUGACGGAGUG&GAUUCC-UUAUUCAC-GCGGUUU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN1833_c0_g1_1327_TPlot.pdf
TRINITY_DN1833_c0_g1:1329	si_a673	TRINITY_DN1833_c0_g1	1317	1340	1329	-34.80	-22.70	0.652298850574713	9	1-3,1340-1338;4-8,1336-1332;9-16,1330-1323;17-21,1321-1317	x-x,1337-1337[BULt];x-x,1331-1331[BULt];x-x,1322-1322[BULt]	(((((.((((((((.(((((.(((&)))-)))))-))))))))-)))))	GCUGCUGUGAAUGACGGAGUGCGA&UUG-AUUCC-UUAUUCAC-GCGGU	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a673_TRINITY_DN1833_c0_g1_1329_TPlot.pdf
TRINITY_DN1833_c0_g1:1655	si_a788	TRINITY_DN1833_c0_g1	1644	1663	1655	-24.80	-17.00	0.685483870967742	10	2-9,1662-1655;11-19,1654-1646	1-1,1663-1663[UP5];10-10,x-x[BULq];20-21,1645-1644[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	ACGGAGGAUGG-GGAAUGGAU&UUCUAUUUUUCUAUUUUCCAA	3	0.999999995555809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN1833_c0_g1_1655_TPlot.pdf
TRINITY_DN1833_c0_g1:1658	si_a771	TRINITY_DN1833_c0_g1	1646	1667	1658	-29.40	-19.60	0.666666666666667	7	1-7,1667-1661;9-12,1659-1656;15-15,1653-1653;16-21,1651-1646	8-8,1660-1660[SIL];13-14,1655-1654[SIL];x-x,1652-1652[BULt]	((((((.(..((((.(((((((&))))))).))))..)-))))))	GGAGGAUGGGGAAUGGAUCAAA&UUUGAUUGAUUCAAC-UCUUCU	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN1833_c0_g1_1658_TPlot.pdf
TRINITY_DN1833_c0_g1:535	si_a792	TRINITY_DN1833_c0_g1	526	544	535	-27.60	-19.80	0.717391304347826	6	3-15,542-530;18-21,529-526	1-2,544-543[UP5];16-17,x-x[BULq]	((((--(((((((((((((..&..)))))))))))))..))))	CGGA--GGAAGAUAGAAAAGA&AUUUUUCUAUUUUCCAAUCCG	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN1833_c0_g1_535_TPlot.pdf
TRINITY_DN18353_c0_g1:1208	si_a407	TRINITY_DN18353_c0_g1	1197	1217	1208	-19.80	-13.70	0.691919191919192	10.5	3-18,1215-1200	1-2,1217-1216[UP5];19-21,1199-1197[UP3]	...((((((((((((((((..&..))))))))))))))))...	CGAUGAGUGUAGAUGAAACUA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999981952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN18353_c0_g1_1208_TPlot.pdf
TRINITY_DN18353_c0_g1:1210	si_a405	TRINITY_DN18353_c0_g1	1199	1219	1210	-19.80	-13.70	0.691919191919192	12.5	5-20,1215-1200	1-4,1219-1216[UP5];21-21,1199-1199[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUGAGUGUAGAUGAAACUAAU&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN18353_c0_g1_1210_TPlot.pdf
TRINITY_DN1835_c0_g1:2431	si_s12	TRINITY_DN1835_c0_g1	2420	2439	2431	-22.80	-14.90	0.653508771929825	6	1-5,2439-2435;7-11,2434-2430;13-21,2428-2420	6-6,x-x[BULq];12-12,2429-2429[SIL]	(((((((((.(((((-(((((&))))).))))).)))))))))	AGUCGAUAUUGUAAU-AUGAG&CUUAUUAUUACUAUAUUGAUU	3	0.999994244422608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN1835_c0_g1_2431_TPlot.pdf
TRINITY_DN18369_c2_g2:59	si_a784	TRINITY_DN18369_c2_g2	48	69	59	-24.70	-16.60	0.672064777327935	9	1-8,69-62;9-11,60-58;14-20,55-49	x-x,61-61[BULt];12-13,57-56[SIL];21-21,48-48[UP3]	.(((((((..(((.((((((((&))))))))-)))..))))))).	UGAAUGGAUUGAUAAGGAGAGU&ACUCUUCU-AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN18369_c2_g2_59_TPlot.pdf
TRINITY_DN1836_c0_g1:2509	si_a612	TRINITY_DN1836_c0_g1	2494	2518	2509	-35.10	-25.60	0.729344729344729	14.5	4-11,2515-2508;12-21,2503-2494	1-3,2518-2516[UP5];x-x,2507-2504[BULt]	((((((((((....((((((((...&...))))))))----))))))))))	UGCGCCUAGUAUGAUGAUUGGAUUC&AAUUCCAAUCG----ACUAGGCGUA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN1836_c0_g1_2509_TPlot.pdf
TRINITY_DN1836_c0_g1:2514	si_a856	TRINITY_DN1836_c0_g1	2503	2522	2514	-24.70	-19.00	0.769230769230769	6	2-7,2521-2516;9-19,2515-2505	1-1,2522-2522[UP5];8-8,x-x[BULq];20-21,2504-2503[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	UAUGAUGAUUGGA-UUCAAGG&ACUUGAAAUCCAAUUAUUAAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN1836_c0_g1_2514_TPlot.pdf
TRINITY_DN1836_c0_g1:361	si_a599	TRINITY_DN1836_c0_g1	351	370	361	-30.40	-19.90	0.654605263157895	8.5	2-11,369-360;13-19,359-353	1-1,370-370[UP5];12-12,x-x[BULq];20-21,352-351[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	UAGGGAUUG-GAGAGUUUUGG&ACAGAAUUUUCGCAAUUCCAA	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN1836_c0_g1_361_TPlot.pdf
TRINITY_DN1836_c0_g1:534	si_a67	TRINITY_DN1836_c0_g1	523	543	534	-27.20	-17.90	0.658088235294118	7	1-11,543-533;14-19,531-526;20-21,524-523	12-13,532-532[AILq];x-x,525-525[BULt]	((.((((((.-(((((((((((&)))))))))))..))))))-))	GGUAAAGCAC-UUGGAGGAAGC&GCUUCUUUCAAAUUGUUUU-UC	4	0.999999999999877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1836_c0_g1_534_TPlot.pdf
TRINITY_DN1836_c0_g1:594	si_a141	TRINITY_DN1836_c0_g1	583	603	594	-23.80	-15.70	0.659663865546218	10.5	4-14,600-590;16-20,588-584	1-3,603-601[UP5];15-15,589-589[SIL];21-21,583-583[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	AAAGACUACGACGAUUGGGCA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999976680179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1836_c0_g1_594_TPlot.pdf
TRINITY_DN18378_c1_g1:327	si_a872	TRINITY_DN18378_c1_g1	315	336	327	-27.00	-18.00	0.666666666666667	9	4-16,333-321;19-21,317-315	1-3,336-334[UP5];17-18,320-318[AILt]	(((...(((((((((((((...&...)))))))))))))-..)))	UGAGGAGCGGCUAAAUCUUCAA&UUAAAGAUUUAGUUGC-AAUCA	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN18378_c1_g1_327_TPlot.pdf
TRINITY_DN18386_c0_g1:130	si_s94	TRINITY_DN18386_c0_g1	118	139	130	-35.50	-23.20	0.653521126760563	7.5	3-12,137-128;13-16,126-123;18-20,121-119	1-2,139-138[UP5];x-x,127-127[BULt];17-17,122-122[SIL];21-21,118-118[UP3]	.(((.((((.((((((((((..&..))))))))))-)))).))).	AAGUGCGAAGGCGAAGAAGAUC&CUUCUUCUUCGC-UUCGGAUUG	3	0.999999998807864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN18386_c0_g1_130_TPlot.pdf
TRINITY_DN18386_c0_g1:131	si_s93	TRINITY_DN18386_c0_g1	119	142	131	-34.80	-23.50	0.675287356321839	6.5	1-3,142-140;4-13,137-128;14-17,126-123;19-21,121-119	x-x,139-138[BULt];x-x,127-127[BULt];18-18,122-122[SIL]	(((.((((.((((((((((..(((&)))--))))))))))-)))).)))	AGUGCGAAGGCGAAGAAGAUCAGA&UCU--UCUUCUUCGC-UUCGGAUU	2	0.999990243530631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN18386_c0_g1_131_TPlot.pdf
TRINITY_DN1838_c1_g1:202	si_a328	TRINITY_DN1838_c1_g1	188	211	202	-30.10	-24.30	0.807308970099668	6	1-18,211-194;19-21,190-188	x-x,193-191[BULt]	(((...((((((((((((((((((&))))))))))))))))))---)))	GGGCUCGCAAGGAAUGAAAAAGUU&GAUUUUUUUAUUCCUUGU---CCC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN1838_c1_g1_202_TPlot.pdf
TRINITY_DN1839_c0_g2:1711	si_s39	TRINITY_DN1839_c0_g2	1700	1720	1711	-22.30	-14.70	0.659192825112108	12	4-9,1717-1712;11-20,1710-1701	1-3,1720-1718[UP5];10-10,1711-1711[SIL];21-21,1700-1700[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	UGGUCCAAUUACUGGGGAAAC&AAAUCUUUAAUAAUUGGAUUU	3	0.999998456089634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1839_c0_g2_1711_TPlot.pdf
TRINITY_DN183_c0_g1:4380	si_a74	TRINITY_DN183_c0_g1	4367	4389	4380	-22.20	-15.98	0.71981981981982	9.5	1-10,4389-4380;13-20,4375-4368	11-12,4379-4376[AILt];21-21,4367-4367[UP3]	.((((((((....((((((((((&))))))))))--..)))))))).	AAAUGAUGACAUUAACAAUUUGA&UCAAAUUGUU--UUUCAUUAUUA	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN183_c0_g1_4380_TPlot.pdf
TRINITY_DN183_c0_g1:4381	si_a73	TRINITY_DN183_c0_g1	4368	4390	4381	-21.90	-16.58	0.757077625570776	7.5	1-11,4390-4380;14-21,4375-4368	12-13,4379-4376[AILt]	((((((((....(((((((((((&)))))))))))--..))))))))	AAUGAUGACAUUAACAAUUUGAA&UUCAAAUUGUU--UUUCAUUAUU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN183_c0_g1_4381_TPlot.pdf
TRINITY_DN183_c0_g1:4382	si_a72	TRINITY_DN183_c0_g1	4369	4391	4382	-21.90	-16.08	0.734246575342466	7	1-12,4391-4380;15-21,4375-4369	13-14,4379-4376[AILt]	(((((((....((((((((((((&))))))))))))--..)))))))	AUGAUGACAUUAACAAUUUGAAG&UUUCAAAUUGUU--UUUCAUUAU	2	0.994497155904433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN183_c0_g1_4382_TPlot.pdf
TRINITY_DN183_c0_g1:4704	si_a150	TRINITY_DN183_c0_g1	4691	4713	4704	-29.90	-19.70	0.658862876254181	6	1-10,4713-4704;12-15,4702-4699;16-20,4696-4692	11-11,4703-4703[SIL];x-x,4698-4697[BULt];21-21,4691-4691[UP3]	.(((((..((((.((((((((((&)))))))))).))))--))))).	AAUUGAUACCUUUAAACAACAGC&GUUGUUGUUUUAAGG--UCAAUC	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN183_c0_g1_4704_TPlot.pdf
TRINITY_DN183_c0_g1:4709	si_a145	TRINITY_DN183_c0_g1	4698	4718	4709	-28.10	-18.60	0.661921708185053	11	6-15,4713-4704;17-21,4702-4698	1-5,4718-4714[UP5];16-16,4703-4703[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	ACCUUUAAACAACAGCAACAG&UAAUCGUUGUUGUUUUAAGGU	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN183_c0_g1_4709_TPlot.pdf
TRINITY_DN183_c0_g1:7247	si_s92	TRINITY_DN183_c0_g1	7232	7256	7247	-34.90	-24.00	0.687679083094556	10	2-15,7255-7242;16-19,7237-7234	1-1,7256-7256[UP5];x-x,7241-7238[BULt];20-21,7233-7232[UP3]	..((((....((((((((((((((.&.))))))))))))))----))))..	AGCUGAAGAAGGCGAGGAAGAAGGC&UUCUUCUUCUUCGCU----UCGGAU	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN183_c0_g1_7247_TPlot.pdf
TRINITY_DN1840_c0_g1:1033	si_s689	TRINITY_DN1840_c0_g1	1022	1041	1033	-26.50	-17.60	0.664150943396226	8	1-8,1041-1034;11-20,1032-1023	9-10,1033-1033[AILq];21-21,1022-1022[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	UGGUUGGCUAGG-AAACUCAU&AUGAGUUUAAUUAGUCGAUUU	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN1840_c0_g1_1033_TPlot.pdf
TRINITY_DN1841_c0_g1:1840	si_a405	TRINITY_DN1841_c0_g1	1823	1849	1840	-19.80	-14.90	0.752525252525252	15	1-11,1849-1839;12-21,1832-1823	x-x,1838-1833[BULt]	((((((((((......(((((((((((&)))))))))))------))))))))))	UUAAGUAUGAUAUGCAGCAAAGCAAUU&AAUUGUUUUGU------UUAUAUUUAA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN1841_c0_g1_1840_TPlot.pdf
TRINITY_DN1841_c0_g1:1841	si_a404	TRINITY_DN1841_c0_g1	1829	1850	1841	-21.70	-17.70	0.815668202764977	6	1-13,1850-1838;14-19,1836-1831	x-x,1837-1837[BULt];20-21,1830-1829[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	AUGAUAUGCAGCAAAGCAAUUC&GAAUUGUUUUGUU-UAUAUUUA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN1841_c0_g1_1841_TPlot.pdf
TRINITY_DN1841_c0_g1:2870	si_a96	TRINITY_DN1841_c0_g1	2859	2880	2870	-27.90	-18.40	0.659498207885305	9	1-7,2880-2874;8-11,2872-2869;13-17,2867-2863	x-x,2873-2873[BULt];12-12,2868-2868[SIL];18-21,2862-2859[UP3]	....(((((.((((.(((((((&)))))))-)))).)))))....	UGCCAUCUUGGUUGCCCUUUUC&GAAAAGG-UAACGAAGAUAAAA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a96_TRINITY_DN1841_c0_g1_2870_TPlot.pdf
TRINITY_DN18421_c0_g1:748	si_a411	TRINITY_DN18421_c0_g1	737	758	748	-17.90	-11.90	0.664804469273743	8.5	1-9,758-750;10-17,748-741	x-x,749-749[BULt];18-21,740-737[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	GACGGUUUAAAUCGUAGACAAA&UUUGUUUAU-AUUUAAAUAAAU	2	0.999998546942701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN18421_c0_g1_748_TPlot.pdf
TRINITY_DN18426_c0_g1:307	si_s88	TRINITY_DN18426_c0_g1	295	316	307	-34.80	-22.90	0.658045977011494	9.5	2-14,315-303;15-19,301-297	1-1,316-316[UP5];x-x,302-302[BULt];20-21,296-295[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	AUAGUGACAGAGGGGGGGAGGG&UCCUUUCUUCUUCU-UCGCUUC	2	0.99999999999267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN18426_c0_g1_307_TPlot.pdf
TRINITY_DN18426_c0_g1:309	si_s86	TRINITY_DN18426_c0_g1	297	318	309	-32.90	-24.50	0.74468085106383	8	2-16,317-303;17-21,301-297	1-1,318-318[UP5];x-x,302-302[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	AGUGACAGAGGGGGGGAGGGAU&UUUCCUUUCUUCUUCU-UCGCU	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN18426_c0_g1_309_TPlot.pdf
TRINITY_DN1842_c0_g1:880	si_a635	TRINITY_DN1842_c0_g1	869	890	880	-26.10	-17.20	0.659003831417624	8.5	1-5,890-886;6-9,884-881;11-19,879-871	x-x,885-885[BULt];10-10,880-880[SIL];20-21,870-869[UP3]	..(((((((((.((((.(((((&)))))-)))).)))))))))..	GAUGCUCAAAGCAAUCAGACGU&AUGUC-GAUUUUUUUGAGUAAU	3	0.999999999998377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN1842_c0_g1_880_TPlot.pdf
TRINITY_DN18430_c1_g1:397	si_a638	TRINITY_DN18430_c1_g1	383	406	397	-24.40	-17.00	0.69672131147541	10	1-10,406-397;11-20,393-384	x-x,396-394[BULt];21-21,383-383[UP3]	.((((((((((...((((((((((&))))))))))---)))))))))).	AAUAUUGCUCAAGGGAAAAAUUGG&UCGAUUUUUU---UGAGUAAUAUA	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN18430_c1_g1_397_TPlot.pdf
TRINITY_DN18430_c1_g1:398	si_a637	TRINITY_DN18430_c1_g1	384	407	398	-25.80	-16.90	0.655038759689922	10.5	2-11,406-397;12-21,393-384	1-1,407-407[UP5];x-x,396-394[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	AUAUUGCUCAAGGGAAAAAUUGGG&GUCGAUUUUUU---UGAGUAAUAU	2	0.999999763892463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN18430_c1_g1_398_TPlot.pdf
TRINITY_DN1843_c0_g1:146	si_s691	TRINITY_DN1843_c0_g1	135	155	146	-26.20	-19.00	0.725190839694656	6.5	1-8,155-148;10-14,146-142;16-21,140-135	9-9,147-147[SIL];15-15,141-141[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	GUAAAUGGAUUAUUUGGACUC&GAGUUUAAUUAGUCGAUUUAU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN1843_c0_g1_146_TPlot.pdf
TRINITY_DN18444_c0_g1:484	si_s794	TRINITY_DN18444_c0_g1	472	494	484	-31.20	-21.82	0.699358974358974	11.5	1-6,494-489;7-10,487-484;14-21,479-472	x-x,488-488[BULt];11-13,483-480[AILt]	((((((((....((((.((((((&))))))-))))-...))))))))	CGAAGAUGUUGUUGCGUGGCUUG&CAAGCU-CGUA-UUUUAUCUUCG	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN18444_c0_g1_484_TPlot.pdf
TRINITY_DN18447_c2_g1:269	si_s61	TRINITY_DN18447_c2_g1	258	278	269	-26.50	-17.80	0.671698113207547	9	3-8,276-271;10-19,269-260	1-2,278-277[UP5];9-9,270-270[SIL];20-21,259-258[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	ACGGAUAGAAGUCGCUAAUGU&AAGUUAGCAACUUCUAUUUUU	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN18447_c2_g1_269_TPlot.pdf
TRINITY_DN1844_c0_g1:12956	si_a143	TRINITY_DN1844_c0_g1	12945	12965	12956	-25.10	-17.70	0.705179282868526	13	5-18,12961-12948	1-4,12965-12962[UP5];19-21,12947-12945[UP3]	...((((((((((((((....&....))))))))))))))...	AUGAGGACAGCGACGAUGAUU&AUUAAUCGUUGUUGUUUUAAG	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN1844_c0_g1_12956_TPlot.pdf
TRINITY_DN1844_c0_g1:12957	si_a142	TRINITY_DN1844_c0_g1	12946	12966	12957	-23.50	-17.70	0.753191489361702	13.5	6-19,12961-12948	1-5,12966-12962[UP5];20-21,12947-12946[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGAGGACAGCGACGAUGAUUU&AAUUAAUCGUUGUUGUUUUAA	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1844_c0_g1_12957_TPlot.pdf
TRINITY_DN1844_c0_g1:13098	si_a17	TRINITY_DN1844_c0_g1	13087	13107	13098	-24.30	-16.90	0.695473251028807	9.5	3-11,13105-13097;13-18,13095-13090;20-21,13088-13087	1-2,13107-13106[UP5];12-12,13096-13096[SIL];19-19,13089-13089[SIL]	((.((((((.(((((((((..&..))))))))).)))))).))	GAGUGAAGACGAAUGGGCUGC&AAAGCCUAUUUAUUUUUAGUU	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN1844_c0_g1_13098_TPlot.pdf
TRINITY_DN1844_c0_g1:19217	si_a249	TRINITY_DN1844_c0_g1	19207	19227	19217	-41.10	-26.80	0.652068126520681	10.5	1-8,19227-19220;11-13,19216-19214;15-20,19213-19208	9-10,19219-19217[AILt];14-14,x-x[BULq];21-21,19207-19207[UP3]	.((((((-(((...((((((((&))))))))-..))).)))))).	GCUCGGU-CAGGAGGGGGGGUC&GAUCCCCC-GAUUGUAUCGAGG	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a249_TRINITY_DN1844_c0_g1_19217_TPlot.pdf
TRINITY_DN1844_c0_g1:22505	si_s72	TRINITY_DN1844_c0_g1	22494	22513	22505	-24.10	-15.92	0.660580912863071	10.5	1-6,22513-22508;11-21,22504-22494	7-10,22507-22505[AILq]	(((((((((((...-((((((&))))))....)))))))))))	AGGGGAAGGAAUAU-AUAGGA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1844_c0_g1_22505_TPlot.pdf
TRINITY_DN1844_c0_g1:22506	si_a327	TRINITY_DN1844_c0_g1	22495	22516	22506	-28.40	-19.30	0.679577464788732	9.5	1-7,22516-22510;10-17,22506-22499;19-21,22497-22495	8-9,22509-22507[AILt];18-18,22498-22498[SIL]	(((.((((((((...(((((((&)))))))-..)))))))).)))	GGGGAAGGAAUAUAUAGGAUCA&UGAUUUU-UUUAUUCCUUGUCC	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1844_c0_g1_22506_TPlot.pdf
TRINITY_DN1844_c0_g1:9098	si_s288	TRINITY_DN1844_c0_g1	9086	9107	9098	-35.10	-23.40	0.666666666666667	9	3-15,9105-9093;17-20,9090-9087	1-2,9107-9106[UP5];16-16,9092-9091[AILt];21-21,9086-9086[UP3]	.((((..(((((((((((((..&..)))))))))))))-.)))).	CAUUCAAGGUCGAUUGGGCGGG&UACGCCUAGUCGAUU-GGAAUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN1844_c0_g1_9098_TPlot.pdf
TRINITY_DN1845_c0_g1:95	si_a411	TRINITY_DN1845_c0_g1	84	104	95	-17.90	-13.30	0.743016759776536	2	1-12,104-93;14-21,91-84	13-13,92-92[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AUUUAUUUUAAUAUAAAUAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1845_c0_g1_95_TPlot.pdf
TRINITY_DN1845_c0_g1:96	si_a410	TRINITY_DN1845_c0_g1	85	105	96	-17.80	-12.20	0.685393258426966	3	2-13,104-93;15-21,91-85	1-1,105-105[UP5];14-14,92-92[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UUUAUUUUAAUAUAAAUAAAC&UUUUGUUUAUAUUUAAAUAAA	2	0.99999829174949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1845_c0_g1_96_TPlot.pdf
TRINITY_DN1846_c1_g1:1486	si_s147	TRINITY_DN1846_c1_g1	1475	1495	1486	-33.10	-21.68	0.654984894259819	5.5	2-13,1494-1483;17-20,1479-1476	1-1,1495-1495[UP5];14-16,1482-1480[SIL];21-21,1475-1475[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	CUGAGAGGCCUUUGGGUUUUG&AAAAACCCAAAGGAGGUUCAU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN1846_c1_g1_1486_TPlot.pdf
TRINITY_DN1846_c1_g2:1500	si_s147	TRINITY_DN1846_c1_g2	1489	1509	1500	-33.10	-21.68	0.654984894259819	5.5	2-13,1508-1497;17-20,1493-1490	1-1,1509-1509[UP5];14-16,1496-1494[SIL];21-21,1489-1489[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	CUGAGAGGCCUUUGGGUUUUG&AAAAACCCAAAGGAGGUUCAU	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN1846_c1_g2_1500_TPlot.pdf
TRINITY_DN1846_c1_g2:1507	si_s140	TRINITY_DN1846_c1_g2	1496	1523	1507	-31.10	-20.90	0.672025723472669	19	3-8,1521-1516;9-20,1508-1497	1-2,1523-1522[UP5];x-x,1515-1509[BULt];21-21,1496-1496[UP3]	.((((((((((((.......((((((..&..))))))-------)))))))))))).	GCCUUUGGGUUUUGUGUCUGUGGUUGUA&AUCAAUCA-------AAAACCCAAAGGA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s140_TRINITY_DN1846_c1_g2_1507_TPlot.pdf
TRINITY_DN18498_c0_g1:987	si_s610	TRINITY_DN18498_c0_g1	973	996	987	-27.20	-20.10	0.738970588235294	6.5	1-14,996-983;15-21,979-973	x-x,982-980[BULt]	(((((((...((((((((((((((&))))))))))))))---)))))))	CGUUUGGUAUAUUUGGAAGAGAUU&AAUCUUUUUUAAAU---CCAAGCG	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN18498_c0_g1_987_TPlot.pdf
TRINITY_DN18498_c0_g1:988	si_s609	TRINITY_DN18498_c0_g1	974	997	988	-27.70	-19.00	0.685920577617328	7	1-15,997-983;16-21,979-974	x-x,982-980[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GUUUGGUAUAUUUGGAAGAGAUUU&GAAUCUUUUUUAAAU---CCAAGC	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN18498_c0_g1_988_TPlot.pdf
TRINITY_DN18499_c0_g2:334	si_s77	TRINITY_DN18499_c0_g2	323	347	334	-25.50	-17.20	0.674509803921569	14.5	1-8,347-340;9-20,335-324	x-x,339-336[BULt];21-21,323-323[UP3]	.((((((((((((....((((((((&))))))))----)))))))))))).	AGAGAAAGGAAAGCAUUGGGGAGAA&UUUUUUUU----CUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN18499_c0_g2_334_TPlot.pdf
TRINITY_DN1849_c0_g2:1089	si_a647	TRINITY_DN1849_c0_g2	1078	1105	1089	-29.50	-19.80	0.671186440677966	20	1-7,1105-1099;8-17,1091-1082	x-x,1098-1092[BULt];18-21,1081-1078[UP3]	....((((((((((.......(((((((&)))))))-------))))))))))....	CAAACCCGAUGUGUUCUUGGUUACUCAA&UUGAGUA-------AUAUAUCGGGAAAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN1849_c0_g2_1089_TPlot.pdf
TRINITY_DN1849_c0_g2:1090	si_a646	TRINITY_DN1849_c0_g2	1079	1106	1090	-29.40	-20.70	0.704081632653061	19	1-8,1106-1099;9-18,1091-1082	x-x,1098-1092[BULt];19-21,1081-1079[UP3]	...((((((((((.......((((((((&))))))))-------))))))))))...	AAACCCGAUGUGUUCUUGGUUACUCAAA&UUUGAGUA-------AUAUAUCGGGAAA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN1849_c0_g2_1090_TPlot.pdf
TRINITY_DN1849_c0_g2:1091	si_a645	TRINITY_DN1849_c0_g2	1080	1107	1091	-29.40	-21.60	0.73469387755102	17.5	1-9,1107-1099;10-19,1091-1082	x-x,1098-1092[BULt];20-21,1081-1080[UP3]	..((((((((((.......(((((((((&)))))))))-------))))))))))..	AACCCGAUGUGUUCUUGGUUACUCAAAA&UUUUGAGUA-------AUAUAUCGGGAA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN1849_c0_g2_1091_TPlot.pdf
TRINITY_DN1849_c0_g2:1100	si_a643	TRINITY_DN1849_c0_g2	1082	1109	1100	-28.30	-22.40	0.791519434628975	16	2-11,1108-1099;12-21,1091-1082	1-1,1109-1109[UP5];x-x,1098-1092[BULt]	((((((((((.......((((((((((.&.))))))))))-------))))))))))	CCCGAUGUGUUCUUGGUUACUCAAAAAC&UUUUUUGAGUA-------AUAUAUCGGG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN1849_c0_g2_1100_TPlot.pdf
TRINITY_DN1849_c0_g2:1102	si_a641	TRINITY_DN1849_c0_g2	1084	1111	1102	-23.60	-15.40	0.652542372881356	13	4-13,1108-1099;14-21,1091-1084	1-3,1111-1109[UP5];x-x,1098-1092[BULt]	((((((((.......((((((((((...&...))))))))))-------))))))))	CGAUGUGUUCUUGGUUACUCAAAAACAG&AUUUUUUUGAGUA-------AUAUAUCG	4	0.999998541607459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN1849_c0_g2_1102_TPlot.pdf
TRINITY_DN1849_c0_g2:1213	si_s815	TRINITY_DN1849_c0_g2	1202	1221	1213	-25.00	-16.40	0.656	5.5	1-9,1221-1213;11-19,1212-1204	10-10,x-x[BULq];20-21,1203-1202[UP3]	..(((((((((-(((((((((&))))))))).)))))))))..	UGCAUUGUUAA-AAAGGGUAA&UUACCUUUUCUUAAUAAUGAA	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN1849_c0_g2_1213_TPlot.pdf
TRINITY_DN1849_c0_g2:1214	si_s813	TRINITY_DN1849_c0_g2	1204	1223	1214	-27.10	-18.40	0.678966789667897	5.5	1-1,1223-1223;3-11,1221-1213;13-21,1212-1204	2-2,1222-1222[SIL];12-12,x-x[BULq]	(((((((((-(((((((((.(&).))))))))).)))))))))	CAUUGUUAA-AAAGGGUAAGG&CGUUACCUUUUCUUAAUAAUG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN1849_c0_g2_1214_TPlot.pdf
TRINITY_DN1849_c0_g2:1217	si_s810	TRINITY_DN1849_c0_g2	1207	1226	1217	-27.90	-18.80	0.673835125448029	4.5	1-4,1226-1223;6-14,1221-1213;16-21,1212-1207	5-5,1222-1222[SIL];15-15,x-x[BULq]	((((((-(((((((((.((((&)))).))))))))).))))))	UGUUAA-AAAGGGUAAGGAAG&CUUCGUUACCUUUUCUUAAUA	2	0.999858280097927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1849_c0_g2_1217_TPlot.pdf
TRINITY_DN1849_c0_g2:1218	si_s809	TRINITY_DN1849_c0_g2	1208	1227	1218	-28.50	-19.00	0.666666666666667	4.5	1-5,1227-1223;7-15,1221-1213;17-21,1212-1208	6-6,1222-1222[SIL];16-16,x-x[BULq]	(((((-(((((((((.(((((&))))).))))))))).)))))	GUUAA-AAAGGGUAAGGAAGA&UCUUCGUUACCUUUUCUUAAU	2	0.999995079587324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN1849_c0_g2_1218_TPlot.pdf
TRINITY_DN1849_c0_g2:1219	si_s808	TRINITY_DN1849_c0_g2	1209	1228	1219	-28.60	-18.70	0.653846153846154	3.5	1-6,1228-1223;8-16,1221-1213;18-21,1212-1209	7-7,1222-1222[SIL];17-17,x-x[BULq]	((((-(((((((((.((((((&)))))).))))))))).))))	UUAA-AAAGGGUAAGGAAGAU&AUCUUCGUUACCUUUUCUUAA	3	0.999999999999652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN1849_c0_g2_1219_TPlot.pdf
TRINITY_DN1849_c0_g2:1221	si_s806	TRINITY_DN1849_c0_g2	1210	1230	1221	-28.60	-18.60	0.65034965034965	8.5	3-8,1228-1223;10-18,1221-1213	1-2,1230-1229[UP5];9-9,1222-1222[SIL];19-21,1212-1210[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	UAAAAAGGGUAAGGAAGAUCG&UUAUCUUCGUUACCUUUUCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1849_c0_g2_1221_TPlot.pdf
TRINITY_DN1849_c0_g2:1223	si_s804	TRINITY_DN1849_c0_g2	1212	1232	1223	-27.90	-18.60	0.666666666666667	10.5	5-10,1228-1223;12-20,1221-1213	1-4,1232-1229[UP5];11-11,1222-1222[SIL];21-21,1212-1212[UP3]	.(((((((((.((((((....&....)))))).))))))))).	AAAAGGGUAAGGAAGAUCGUA&UUUUAUCUUCGUUACCUUUUC	2	0.99999950177275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN1849_c0_g2_1223_TPlot.pdf
TRINITY_DN1849_c0_g2:1224	si_s803	TRINITY_DN1849_c0_g2	1213	1233	1224	-26.00	-18.60	0.715384615384615	11.5	6-11,1228-1223;13-21,1221-1213	1-5,1233-1229[UP5];12-12,1222-1222[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	AAAGGGUAAGGAAGAUCGUAA&AUUUUAUCUUCGUUACCUUUU	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1849_c0_g2_1224_TPlot.pdf
TRINITY_DN1849_c0_g2:1225	si_s802	TRINITY_DN1849_c0_g2	1214	1234	1225	-26.40	-17.70	0.670454545454545	12.5	7-12,1228-1223;14-21,1221-1214	1-6,1234-1229[UP5];13-13,1222-1222[SIL]	((((((((.((((((......&......)))))).))))))))	AAGGGUAAGGAAGAUCGUAAC&UAUUUUAUCUUCGUUACCUUU	2	0.999993844025442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1849_c0_g2_1225_TPlot.pdf
TRINITY_DN1849_c0_g3:851	si_s132	TRINITY_DN1849_c0_g3	840	860	851	-28.40	-19.00	0.669014084507042	8.5	2-16,859-845	1-1,860-860[UP5];17-21,844-840[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUUCUGGUUGGUUCAAUUCC&AGAGUUGAAUCAAUCAAAAAC	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN1849_c0_g3_851_TPlot.pdf
TRINITY_DN1849_c0_g3:852	si_s131	TRINITY_DN1849_c0_g3	841	861	852	-26.70	-19.00	0.711610486891386	9.5	3-17,859-845	1-2,861-860[UP5];18-21,844-841[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUUCUGGUUGGUUCAAUUCCA&AAGAGUUGAAUCAAUCAAAAA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN1849_c0_g3_852_TPlot.pdf
TRINITY_DN1849_c0_g3:853	si_s130	TRINITY_DN1849_c0_g3	842	862	853	-28.70	-19.00	0.662020905923345	10.5	4-18,859-845	1-3,862-860[UP5];19-21,844-842[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCUGGUUGGUUCAAUUCCAC&GAAGAGUUGAAUCAAUCAAAA	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN1849_c0_g3_853_TPlot.pdf
TRINITY_DN1849_c0_g3:855	si_s128	TRINITY_DN1849_c0_g3	844	864	855	-29.80	-19.60	0.657718120805369	7.5	1-3,864-862;6-20,859-845	4-5,861-860[SIL];21-21,844-844[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	CUGGUUGGUUCAAUUCCACUG&UAGAAGAGUUGAAUCAAUCAA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s128_TRINITY_DN1849_c0_g3_855_TPlot.pdf
TRINITY_DN184_c0_g1:2297	si_a131	TRINITY_DN184_c0_g1	2286	2306	2297	-27.00	-18.00	0.666666666666667	9	4-12,2303-2295;14-19,2293-2288	1-3,2306-2304[UP5];13-13,2294-2294[SIL];20-21,2287-2286[UP3]	..((((((.(((((((((...&...))))))))).))))))..	AGGAUUAAAUGCUAUUGCGGA&AUAGCAAUAGUAAUUAAUCGU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a131_TRINITY_DN184_c0_g1_2297_TPlot.pdf
TRINITY_DN184_c0_g1:2348	si_a79	TRINITY_DN184_c0_g1	2337	2357	2348	-22.20	-14.80	0.666666666666667	8.5	2-9,2356-2349;11-18,2347-2340	1-1,2357-2357[UP5];10-10,2348-2348[SIL];19-21,2339-2337[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	UGGCUUGAUGAAGAAAAACGG&UUGUUUUUCAUUAUUAAGAAA	4	0.999999936727453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN184_c0_g1_2348_TPlot.pdf
TRINITY_DN184_c0_g1:2350	si_a77	TRINITY_DN184_c0_g1	2339	2359	2350	-22.20	-14.80	0.666666666666667	10	4-11,2356-2349;13-20,2347-2340	1-3,2359-2357[UP5];12-12,2348-2348[SIL];21-21,2339-2339[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	GCUUGAUGAAGAAAAACGGAG&AAUUGUUUUUCAUUAUUAAGA	4	0.999999944098155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN184_c0_g1_2350_TPlot.pdf
TRINITY_DN184_c0_g1:2351	si_a76	TRINITY_DN184_c0_g1	2340	2360	2351	-21.20	-14.60	0.688679245283019	10	5-12,2356-2349;14-21,2347-2340	1-4,2360-2357[UP5];13-13,2348-2348[SIL]	((((((((.((((((((....&....)))))))).))))))))	CUUGAUGAAGAAAAACGGAGC&AAAUUGUUUUUCAUUAUUAAG	2	0.999874865257008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN184_c0_g1_2351_TPlot.pdf
TRINITY_DN184_c0_g1:24	si_a546	TRINITY_DN184_c0_g1	10	33	24	-28.60	-20.32	0.71048951048951	6	1-14,33-20;17-21,14-10	15-16,19-15[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN184_c0_g1_24_TPlot.pdf
TRINITY_DN184_c0_g1:2626	si_s87	TRINITY_DN184_c0_g1	2613	2636	2626	-32.90	-22.40	0.680851063829787	7.5	1-7,2636-2630;8-10,2628-2626;11-17,2624-2618;18-21,2616-2613	x-x,2629-2629[BULt];x-x,2625-2625[BULt];x-x,2617-2617[BULt]	((((.(((((((.(((.(((((((&)))))))-)))-)))))))-))))	GAGCAGAGGAAGAAAGAAGAGGAG&UUCCUUU-CUU-CUUCUUC-GCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN184_c0_g1_2626_TPlot.pdf
TRINITY_DN184_c0_g1:2689	si_s89	TRINITY_DN184_c0_g1	2678	2699	2689	-35.30	-24.70	0.69971671388102	4.5	1-3,2699-2697;4-14,2695-2685;17-21,2682-2678	x-x,2696-2696[BULt];15-16,2684-2683[SIL]	(((((..(((((((((((.(((&)))-)))))))))))..)))))	CGAGGGUAAGAAGAAGAACAGG&CCU-UUCUUCUUCUUCGCUUCG	4	0.999999861362699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN184_c0_g1_2689_TPlot.pdf
TRINITY_DN184_c0_g1:2692	si_s86	TRINITY_DN184_c0_g1	2680	2703	2692	-32.90	-22.30	0.677811550151976	8	1-6,2703-2698;7-17,2695-2685;18-18,2683-2683;20-21,2681-2680	x-x,2697-2696[BULt];x-x,2684-2684[BULt];19-19,2682-2682[SIL]	((.(.(((((((((((..((((((&))))))--)))))))))))-).))	AGGGUAAGAAGAAGAACAGGGAGA&UUUCCU--UUCUUCUUCUU-CGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN184_c0_g1_2692_TPlot.pdf
TRINITY_DN184_c0_g1:67	si_s889	TRINITY_DN184_c0_g1	55	76	67	-28.80	-19.40	0.673611111111111	14.5	8-17,69-60;18-21,58-55	1-7,76-70[UP5];x-x,59-59[BULt]	((((.((((((((((.......&.......))))))))))-))))	GAAGAAGAAGGCCUAAAUGACA&AAAUAAAUAGGCUUUCU-CUUC	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN184_c0_g1_67_TPlot.pdf
TRINITY_DN184_c0_g2:1039	si_a784	TRINITY_DN184_c0_g2	1028	1049	1039	-24.70	-17.10	0.692307692307692	9.5	2-3,1048-1047;4-17,1045-1032	1-1,1049-1049[UP5];x-x,1046-1046[BULt];18-21,1031-1028[UP3]	....((((((((((((((.((.&.))-))))))))))))))....	AUAUUAGAGAAGUGGAAGUAGA&ACU-CUUCUAUUUUUCUAUUUU	3	0.999999999945049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN184_c0_g2_1039_TPlot.pdf
TRINITY_DN184_c0_g2:1040	si_a783	TRINITY_DN184_c0_g2	1029	1050	1040	-24.70	-17.10	0.692307692307692	10.5	3-4,1048-1047;5-18,1045-1032	1-2,1050-1049[UP5];x-x,1046-1046[BULt];19-21,1031-1029[UP3]	...((((((((((((((.((..&..))-))))))))))))))...	UAUUAGAGAAGUGGAAGUAGAA&AACU-CUUCUAUUUUUCUAUUU	4	0.999999999153632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN184_c0_g2_1040_TPlot.pdf
TRINITY_DN184_c0_g2:2208	si_a764	TRINITY_DN184_c0_g2	2197	2217	2208	-28.90	-20.30	0.70242214532872	5.5	1-15,2217-2203;18-20,2200-2198	16-17,2202-2201[SIL];21-21,2197-2197[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	AUGGCGCAAUUAAAAGCCCAA&UUGGGUUUUUGAUUGAUUCAA	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN184_c0_g2_2208_TPlot.pdf
TRINITY_DN184_c0_g2:25	si_a545	TRINITY_DN184_c0_g2	14	34	25	-28.10	-18.60	0.661921708185053	8	2-15,33-20	1-1,34-34[UP5];16-21,19-14[UP3]	......((((((((((((((.&.))))))))))))))......	AUCUGUAAAUAGAUUGAGCCC&CGGUUCAAUCUAUUUCUUUAU	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN184_c0_g2_25_TPlot.pdf
TRINITY_DN184_c0_g2:2856	si_a785	TRINITY_DN184_c0_g2	2845	2866	2856	-25.90	-18.60	0.718146718146718	8	1-7,2866-2860;9-16,2857-2850;18-21,2848-2845	8-8,2859-2858[AILt];17-17,2849-2849[SIL]	((((.((((((((..(((((((&)))))))-.)))))))).))))	GAAGUUGGAAAGGCGAGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	4	0.999999656177692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN184_c0_g2_2856_TPlot.pdf
TRINITY_DN184_c0_g2:2857	si_s80	TRINITY_DN184_c0_g2	2845	2866	2857	-28.20	-19.80	0.702127659574468	7.5	2-8,2865-2859;10-16,2857-2851;18-21,2848-2845	1-1,2866-2866[UP5];9-9,2858-2858[SIL];17-17,2850-2849[AILt]	((((..(((((((.(((((((.&.))))))).)))))))-.))))	GAAGUUGGAAAGGCGAGAAGAG&UUUUUCUUUCCUUUCU-UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN184_c0_g2_2857_TPlot.pdf
TRINITY_DN184_c0_g2:3567	si_s76	TRINITY_DN184_c0_g2	3556	3576	3567	-23.60	-17.70	0.75	13	6-19,3571-3558	1-5,3576-3572[UP5];20-21,3557-3556[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGGGAGGAGAGAAAACUGUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN184_c0_g2_3567_TPlot.pdf
TRINITY_DN184_c0_g2:3570	si_s73	TRINITY_DN184_c0_g2	3559	3578	3570	-24.00	-16.10	0.670833333333333	10.5	2-5,3577-3574;9-21,3571-3559	1-1,3578-3578[UP5];6-8,3573-3572[AILq]	(((((((((((((..-((((.&.))))...)))))))))))))	GGAGGAGAGAAAACU-GUGGC&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN184_c0_g2_3570_TPlot.pdf
TRINITY_DN184_c0_g2:493	si_s511	TRINITY_DN184_c0_g2	482	502	493	-25.50	-16.80	0.658823529411765	7	1-14,502-489	15-21,488-482[UP3]	.......((((((((((((((&)))))))))))))).......	CCUCUUCAGAAUAUAGAAUUG&CAAUUCUAUAUUCUUAAUUCG	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN184_c0_g2_493_TPlot.pdf
TRINITY_DN184_c0_g2:495	si_s509	TRINITY_DN184_c0_g2	484	504	495	-22.80	-16.80	0.736842105263158	8	3-16,502-489	1-2,504-503[UP5];17-21,488-484[UP3]	.....((((((((((((((..&..)))))))))))))).....	UCUUCAGAAUAUAGAAUUGAU&AACAAUUCUAUAUUCUUAAUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN184_c0_g2_495_TPlot.pdf
TRINITY_DN184_c0_g2:500	si_s504	TRINITY_DN184_c0_g2	489	509	500	-24.70	-16.80	0.680161943319838	13	8-21,502-489	1-7,509-503[UP5]	((((((((((((((.......&.......))))))))))))))	AGAAUAUAGAAUUGAUGGAAA&AACAAAACAAUUCUAUAUUCU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN184_c0_g2_500_TPlot.pdf
TRINITY_DN184_c0_g2:764	si_s77	TRINITY_DN184_c0_g2	744	773	764	-25.50	-18.90	0.741176470588235	20	1-12,773-762;13-21,752-744	x-x,761-753[BULt]	(((((((((.........((((((((((((&))))))))))))---------)))))))))	GAAGAAAGGUAUUAAUGCAGAGAAAAAAGA&UUUUUUUUCUUU---------CCUUUCUUC	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN184_c0_g2_764_TPlot.pdf
TRINITY_DN184_c0_g2:765	si_s76	TRINITY_DN184_c0_g2	745	774	765	-23.60	-15.70	0.665254237288135	12	2-13,773-762;14-21,752-745	1-1,774-774[UP5];x-x,761-753[BULt]	((((((((.........((((((((((((.&.))))))))))))---------))))))))	AAGAAAGGUAUUAAUGCAGAGAAAAAAGAA&AUUUUUUUUCUUU---------CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN184_c0_g2_765_TPlot.pdf
TRINITY_DN184_c0_g2:789	si_a790	TRINITY_DN184_c0_g2	779	798	789	-25.80	-17.40	0.674418604651163	8	4-10,795-789;12-21,788-779	1-3,798-796[UP5];11-11,x-x[BULq]	((((((((((-(((((((...&...))))))).))))))))))	GAUUGGAAAA-AGAAGAAGCU&CUAUUUUUCUAUUUUCCAAUC	2	0.999071824285151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN184_c0_g2_789_TPlot.pdf
TRINITY_DN18501_c0_g1:1385	si_a353	TRINITY_DN18501_c0_g1	1374	1394	1385	-24.00	-16.50	0.6875	8	4-13,1391-1382;15-20,1380-1375	1-3,1394-1392[UP5];14-14,1381-1381[SIL];21-21,1374-1374[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AGAUCAACAUAGAAUUGACUA&AUAUUAAUUCUAUUUUGAUCG	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN18501_c0_g1_1385_TPlot.pdf
TRINITY_DN18501_c0_g1:1386	si_a352	TRINITY_DN18501_c0_g1	1375	1396	1386	-22.50	-16.20	0.72	5	2-4,1395-1393;5-14,1391-1382;16-21,1380-1375	1-1,1396-1396[UP5];x-x,1392-1392[BULt];15-15,1381-1381[SIL]	((((((.((((((((((.(((.&.)))-)))))))))).))))))	GAUCAACAUAGAAUUGACUAUA&AAUA-UUAAUUCUAUUUUGAUC	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN18501_c0_g1_1386_TPlot.pdf
TRINITY_DN18501_c0_g1:427	si_a59	TRINITY_DN18501_c0_g1	416	438	427	-34.00	-22.10	0.65	10	1-8,438-431;9-18,428-419	x-x,430-429[BULt];19-21,418-416[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	GUAUGAAGGAAGUUGGAGUUGAU&GUCGACUC--GCUUCUUUCAAAU	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN18501_c0_g1_427_TPlot.pdf
TRINITY_DN18501_c0_g1:506	si_a113	TRINITY_DN18501_c0_g1	495	515	506	-26.20	-17.80	0.679389312977099	8.5	4-7,512-509;9-14,507-502;16-21,500-495	1-3,515-513[UP5];8-8,508-508[SIL];15-15,501-501[SIL]	((((((.((((((.((((...&...)))).)))))).))))))	UGUAAAUCAAGCUGGUAUAGA&AAAAUACGAGCUUGUUUUAUA	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN18501_c0_g1_506_TPlot.pdf
TRINITY_DN18501_c0_g1:612	si_s68	TRINITY_DN18501_c0_g1	601	620	612	-23.10	-17.40	0.753246753246753	7	1-8,620-613;10-19,612-603	9-9,x-x[BULq];20-21,602-601[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	UUGGAAAAGAAA-GGAGGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN18501_c0_g1_612_TPlot.pdf
TRINITY_DN18501_c0_g1:613	si_s66	TRINITY_DN18501_c0_g1	603	623	613	-26.30	-17.70	0.673003802281369	7	1-3,623-621;4-10,619-613;12-21,612-603	x-x,620-620[BULt];11-11,x-x[BULq]	((((((((((-(((((((.(((&)))-))))))).))))))))))	GGAAAAGAAA-GGAGGUUGGCU&AGC-AACUUCUAUUUUUUUUCU	2	0.999919054515961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN18501_c0_g1_613_TPlot.pdf
TRINITY_DN18510_c0_g2:1001	si_s72	TRINITY_DN18510_c0_g2	990	1010	1001	-24.10	-16.28	0.67551867219917	6	1-13,1010-998;17-21,994-990	14-16,997-995[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	AAGGAUUUAGAAGAAGUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN18510_c0_g2_1001_TPlot.pdf
TRINITY_DN18510_c0_g2:1005	si_a784	TRINITY_DN18510_c0_g2	993	1014	1005	-24.70	-18.00	0.728744939271255	6	2-14,1013-1001;15-17,999-997;20-21,994-993	1-1,1014-1014[UP5];x-x,1000-1000[BULt];18-19,996-995[SIL]	((..(((.(((((((((((((.&.)))))))))))))-)))..))	GAUUUAGAAGAAGUAGAAGAGA&ACUCUUCUAUUUUU-CUAUUUU	3	0.999990257383135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN18510_c0_g2_1005_TPlot.pdf
TRINITY_DN18510_c0_g2:1006	si_a783	TRINITY_DN18510_c0_g2	994	1015	1006	-24.70	-17.40	0.704453441295547	8.5	3-15,1013-1001;16-18,999-997	1-2,1015-1014[UP5];x-x,1000-1000[BULt];19-21,996-994[UP3]	...(((.(((((((((((((..&..)))))))))))))-)))...	AUUUAGAAGAAGUAGAAGAGAC&AACUCUUCUAUUUUU-CUAUUU	3	0.999999886634672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN18510_c0_g2_1006_TPlot.pdf
TRINITY_DN18510_c0_g2:1007	si_a782	TRINITY_DN18510_c0_g2	995	1016	1007	-26.40	-17.40	0.659090909090909	9.5	4-16,1013-1001;17-19,999-997	1-3,1016-1014[UP5];x-x,1000-1000[BULt];20-21,996-995[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	UUUAGAAGAAGUAGAAGAGACG&CAACUCUUCUAUUUUU-CUAUU	3	0.999999996912973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN18510_c0_g2_1007_TPlot.pdf
TRINITY_DN18510_c0_g2:1119	si_s81	TRINITY_DN18510_c0_g2	1109	1128	1119	-28.90	-20.90	0.72318339100346	7	2-11,1127-1118;14-21,1116-1109	1-1,1128-1128[UP5];12-13,1117-1117[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	AGAAGAAGC-AGGAGGGAAGC&UUUUCUUUCCUUUCUUCUUCU	4	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN18510_c0_g2_1119_TPlot.pdf
TRINITY_DN18510_c0_g2:1232	si_s79	TRINITY_DN18510_c0_g2	1219	1241	1232	-26.20	-18.90	0.721374045801527	10	4-13,1238-1229;14-20,1226-1220	1-3,1241-1239[UP5];x-x,1228-1227[BULt];21-21,1219-1219[UP3]	.(((((((..((((((((((...&...))))))))))--))))))).	CAGAAGAAGCAGGAGAGAAGCAG&UUUUUUCUUUCCU--UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN18510_c0_g2_1232_TPlot.pdf
TRINITY_DN18510_c0_g2:1337	si_a784	TRINITY_DN18510_c0_g2	1326	1347	1337	-24.70	-16.30	0.659919028340081	9	2-8,1346-1340;10-17,1337-1330;20-21,1327-1326	1-1,1347-1347[UP5];9-9,1339-1338[AILt];18-19,1329-1328[SIL]	((..((((((((..(((((((.&.)))))))-.))))))))..))	GAUUUAGGAGAAGCAGAAGAGA&ACUCUUCU-AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN18510_c0_g2_1337_TPlot.pdf
TRINITY_DN18515_c0_g1:330	si_a739	TRINITY_DN18515_c0_g1	314	339	330	-41.50	-27.00	0.650602409638554	15.5	1-11,339-329;12-17,323-318	x-x,328-324[BULt];18-21,317-314[UP3]	....((((((.....(((((((((((&)))))))))))-----))))))....	CGAGCGUGGCGCUGGCGGGGGUAAAG&CUUUACCCCUG-----GCCAUGAACC	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a739_TRINITY_DN18515_c0_g1_330_TPlot.pdf
TRINITY_DN18516_c0_g1:1164	si_a412	TRINITY_DN18516_c0_g1	1154	1173	1164	-18.30	-12.10	0.66120218579235	8	1-15,1173-1159;17-20,1158-1155	16-16,x-x[BULq];21-21,1154-1154[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	GAUUU-UUUGGGUGUAGGCAA&UUGUUUAUAUUUAAAUAAAUA	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN18516_c0_g1_1164_TPlot.pdf
TRINITY_DN18516_c0_g1:1165	si_a411	TRINITY_DN18516_c0_g1	1154	1174	1165	-17.90	-11.90	0.664804469273743	11.5	2-16,1173-1159	1-1,1174-1174[UP5];17-21,1158-1154[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAUUUUUUGGGUGUAGGCAAC&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999936684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN18516_c0_g1_1165_TPlot.pdf
TRINITY_DN18516_c0_g1:1166	si_a410	TRINITY_DN18516_c0_g1	1155	1175	1166	-17.80	-11.90	0.668539325842697	12	3-17,1173-1159	1-2,1175-1174[UP5];18-21,1158-1155[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUUUUUUGGGUGUAGGCAACC&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN18516_c0_g1_1166_TPlot.pdf
TRINITY_DN18516_c0_g1:1242	si_a406	TRINITY_DN18516_c0_g1	1231	1251	1242	-19.80	-13.20	0.666666666666667	8	2-10,1250-1242;12-18,1240-1234	1-1,1251-1251[UP5];11-11,1241-1241[SIL];19-21,1233-1231[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	UGAAGGUAUACACAAAGCAAG&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN18516_c0_g1_1242_TPlot.pdf
TRINITY_DN18516_c0_g1:1243	si_a405	TRINITY_DN18516_c0_g1	1232	1252	1243	-19.80	-13.20	0.666666666666667	9	3-11,1250-1242;13-19,1240-1234	1-2,1252-1251[UP5];12-12,1241-1241[SIL];20-21,1233-1232[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	GAAGGUAUACACAAAGCAAGA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN18516_c0_g1_1243_TPlot.pdf
TRINITY_DN18516_c0_g1:543	si_s157	TRINITY_DN18516_c0_g1	532	553	543	-45.20	-29.60	0.654867256637168	7.5	1-3,553-551;4-4,549-549;6-9,547-544;11-21,542-532	x-x,550-550[BULt];5-5,548-548[SIL];10-10,543-543[SIL]	(((((((((((.((((.(.(((&)))-).)))).)))))))))))	ACUCCUGGCCAAGAAUGUACCU&AGG-AGGUUCAUGGCCAGGGGU	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN18516_c0_g1_543_TPlot.pdf
TRINITY_DN18516_c0_g1:544	si_s156	TRINITY_DN18516_c0_g1	533	554	544	-44.40	-29.60	0.666666666666667	7.5	1-4,554-551;5-5,549-549;7-10,547-544;12-21,542-533	x-x,550-550[BULt];6-6,548-548[SIL];11-11,543-543[SIL]	((((((((((.((((.(.((((&))))-).)))).))))))))))	CUCCUGGCCAAGAAUGUACCUU&AAGG-AGGUUCAUGGCCAGGGG	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s156_TRINITY_DN18516_c0_g1_544_TPlot.pdf
TRINITY_DN1851_c0_g1:1979	si_a412	TRINITY_DN1851_c0_g1	1968	1988	1979	-18.30	-12.40	0.677595628415301	8	1-10,1988-1979;12-17,1977-1972	11-11,1978-1978[SIL];18-21,1971-1968[UP3]	....((((((.((((((((((&)))))))))).))))))....	CUUAUAUUUAUAUGUGAACAA&UUGUUUAUAUUUAAAUAAAUA	2	0.998547150004088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN1851_c0_g1_1979_TPlot.pdf
TRINITY_DN18526_c0_g1:333	si_s78	TRINITY_DN18526_c0_g1	322	342	333	-26.20	-19.50	0.744274809160305	9	3-8,340-335;11-21,332-322	1-2,342-341[UP5];9-10,334-333[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	AGAAGAAAGGGUUGAAGAAUC&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999999098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN18526_c0_g1_333_TPlot.pdf
TRINITY_DN18526_c0_g1:457	si_s75	TRINITY_DN18526_c0_g1	446	466	457	-24.00	-15.60	0.65	12.5	6-12,461-455;14-21,453-446	1-5,466-462[UP5];13-13,454-454[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AGAAAGGGUGGAAAAGUUUAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18526_c0_g1_457_TPlot.pdf
TRINITY_DN18526_c0_g1:623	si_a576	TRINITY_DN18526_c0_g1	612	634	623	-28.70	-19.10	0.665505226480836	6.5	1-5,634-630;6-21,627-612	x-x,629-628[BULt]	((((((((((((((((..(((((&)))))--))))))))))))))))	UUUUUGUUACAAAUGUUCACGAU&AUCGU--AUGUUUGUAACAAGAA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN18526_c0_g1_623_TPlot.pdf
TRINITY_DN18531_c0_g2:86	si_s883	TRINITY_DN18531_c0_g2	75	95	86	-24.30	-16.90	0.695473251028807	13.5	8-21,88-75	1-7,95-89[UP5]	((((((((((((((.......&.......))))))))))))))	AAAGCCUGUUUAUUGAUAAUG&AACUAAAAAUAAAUAGGCUUU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN18531_c0_g2_86_TPlot.pdf
TRINITY_DN1853_c0_g1:1251	si_a452	TRINITY_DN1853_c0_g1	1240	1260	1251	-23.00	-15.00	0.652173913043478	8.5	2-7,1259-1254;10-19,1251-1242	1-1,1260-1260[UP5];8-9,1253-1252[SIL];20-21,1241-1240[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	CGAUAUAUGACAUAGAUUAUA&GAUAAUUGUUGUUAUAUAUAA	3	0.999998883256769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN1853_c0_g1_1251_TPlot.pdf
TRINITY_DN1853_c0_g1:165	si_a352	TRINITY_DN1853_c0_g1	153	174	165	-22.50	-15.00	0.666666666666667	11.5	6-17,169-158;18-21,156-153	1-5,174-170[UP5];x-x,157-157[BULt]	((((.((((((((((((.....&.....))))))))))))-))))	GAUCGAAGAUGGAAUUAUAAAA&AAUAUUAAUUCUAUUUU-GAUC	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN1853_c0_g1_165_TPlot.pdf
TRINITY_DN1854_c0_g1:1394	si_a149	TRINITY_DN1854_c0_g1	1382	1403	1394	-29.40	-19.30	0.656462585034014	9.5	2-12,1402-1392;14-18,1389-1385	1-1,1403-1403[UP5];13-13,1391-1390[AILt];19-21,1384-1382[UP3]	...(((((..(((((((((((.&.)))))))))))-.)))))...	GAGGAUCUAGGAAGCAACAACA&CGUUGUUGUUUU-AAGGUCAAU	4	0.999999985387986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN1854_c0_g1_1394_TPlot.pdf
TRINITY_DN18554_c0_g2:322	si_s808	TRINITY_DN18554_c0_g2	311	331	322	-28.60	-19.50	0.681818181818182	8	1-5,331-327;8-21,324-311	6-7,326-325[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UUAGGGAAAGGUAGGUAGGGU&AUCUUCGUUACCUUUUCUUAA	2	0.999953187730242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN18554_c0_g2_322_TPlot.pdf
TRINITY_DN18554_c1_g1:136	si_s764	TRINITY_DN18554_c1_g1	127	145	136	-25.70	-16.78	0.652918287937743	6.5	1-11,145-135;16-21,132-127	12-15,134-133[AILq]	((((((..--(((((((((((&)))))))))))....))))))	AAUGGUUG--AAUUGUUGUUG&CAACAACGAUUAAUUACUAUU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN18554_c1_g1_136_TPlot.pdf
TRINITY_DN18554_c2_g1:168	si_a466	TRINITY_DN18554_c2_g1	158	177	168	-21.50	-14.50	0.674418604651163	6	3-13,175-165;15-20,164-159	1-2,177-176[UP5];14-14,x-x[BULq];21-21,158-158[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CCAAUAA-UGCAUAUUAUAGU&UAUAUAAUAUGUAAUUAUUGU	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN18554_c2_g1_168_TPlot.pdf
TRINITY_DN18563_c0_g1:3119	si_s396	TRINITY_DN18563_c0_g1	3108	3128	3119	-32.90	-21.60	0.656534954407295	11	4-7,3125-3122;9-18,3120-3111	1-3,3128-3126[UP5];8-8,3121-3121[SIL];19-21,3110-3108[UP3]	...((((((((((.((((...&...)))).))))))))))...	CAAUCGUCUUCCUGGGAGCCA&ACAUUCCAAGGAAGACGAAAA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN18563_c0_g1_3119_TPlot.pdf
TRINITY_DN18563_c0_g1:3499	si_a547	TRINITY_DN18563_c0_g1	3488	3509	3499	-26.90	-17.50	0.650557620817844	10	1-8,3509-3502;9-10,3500-3499;12-20,3497-3489	x-x,3501-3501[BULt];11-11,3498-3498[SIL];21-21,3488-3488[UP3]	.(((((((((.((.((((((((&))))))))-)).))))))))).	UGGUGGAGGAUUAUGGUUGGGC&GUUCAAUC-UAUUUCUUUAUCU	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN18563_c0_g1_3499_TPlot.pdf
TRINITY_DN18563_c0_g1:3645	si_a70	TRINITY_DN18563_c0_g1	3634	3654	3645	-23.90	-17.00	0.711297071129707	9	1-7,3654-3648;10-18,3645-3637	8-9,3647-3646[SIL];19-21,3636-3634[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	CCAGAAAGGCGACGUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN18563_c0_g1_3645_TPlot.pdf
TRINITY_DN18563_c0_g1:3646	si_a69	TRINITY_DN18563_c0_g1	3635	3655	3646	-24.00	-17.90	0.745833333333333	8	1-8,3655-3648;11-19,3645-3637	9-10,3647-3646[SIL];20-21,3636-3635[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	CAGAAAGGCGACGUGAAAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN18563_c0_g1_3646_TPlot.pdf
TRINITY_DN18563_c0_g1:3647	si_a68	TRINITY_DN18563_c0_g1	3636	3656	3647	-25.40	-20.80	0.818897637795276	6.5	1-9,3656-3648;12-20,3645-3637	10-11,3647-3646[SIL];21-21,3636-3636[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	AGAAAGGCGACGUGAAAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN18563_c0_g1_3647_TPlot.pdf
TRINITY_DN18563_c0_g1:3648	si_a67	TRINITY_DN18563_c0_g1	3637	3657	3648	-27.20	-20.50	0.753676470588235	6.5	2-10,3656-3648;13-21,3645-3637	1-1,3657-3657[UP5];11-12,3647-3646[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	GAAAGGCGACGUGAAAGAAGA&GCUUCUUUCAAAUUGUUUUUC	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN18563_c0_g1_3648_TPlot.pdf
TRINITY_DN1856_c0_g1:2008	si_s440	TRINITY_DN1856_c0_g1	1990	2017	2008	-21.60	-16.20	0.75	15.5	1-12,2017-2006;13-21,1998-1990	x-x,2005-1999[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	UUGUUGUAUUUCGUACGUAAUAUGUAAU&AUUACAUAUUAU-------AUAUAACAA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN1856_c0_g1_2008_TPlot.pdf
TRINITY_DN1856_c0_g1:2009	si_s439	TRINITY_DN1856_c0_g1	1991	2018	2009	-21.50	-15.50	0.720930232558139	9	2-13,2017-2006;14-21,1998-1991	1-1,2018-2018[UP5];x-x,2005-1999[BULt]	((((((((.......((((((((((((.&.))))))))))))-------))))))))	UGUUGUAUUUCGUACGUAAUAUGUAAUA&AAUUACAUAUUAU-------AUAUAACA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN1856_c0_g1_2009_TPlot.pdf
TRINITY_DN1856_c0_g1:2010	si_s438	TRINITY_DN1856_c0_g1	1992	2019	2010	-21.20	-14.00	0.660377358490566	11	3-14,2017-2006;15-21,1998-1992	1-2,2019-2018[UP5];x-x,2005-1999[BULt]	(((((((.......((((((((((((..&..))))))))))))-------)))))))	GUUGUAUUUCGUACGUAAUAUGUAAUAA&UAAUUACAUAUUAU-------AUAUAAC	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN1856_c0_g1_2010_TPlot.pdf
TRINITY_DN1856_c0_g1:593	si_a762	TRINITY_DN1856_c0_g1	582	603	593	-29.70	-21.70	0.730639730639731	8.5	1-1,603-603;4-5,600-599;6-21,597-582	2-3,602-601[SIL];x-x,598-598[BULt]	((((((((((((((((.((..(&)..))-))))))))))))))))	GGAUCAGUUAAAGACCGCAUUG&CUUUG-GGUUUUUGAUUGAUUC	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1856_c0_g1_593_TPlot.pdf
TRINITY_DN18570_c0_g1:23	si_s439	TRINITY_DN18570_c0_g1	12	32	23	-21.50	-14.30	0.665116279069767	9.5	2-15,31-18	1-1,32-32[UP5];16-21,17-12[UP3]	......((((((((((((((.&.))))))))))))))......	UGACUGGUAUAAUGUGUGAUG&AAUUACAUAUUAUAUAUAACA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN18570_c0_g1_23_TPlot.pdf
TRINITY_DN18576_c0_g1:752	si_s80	TRINITY_DN18576_c0_g1	741	761	752	-28.20	-22.10	0.783687943262411	3	2-17,760-745;19-21,743-741	1-1,761-761[UP5];18-18,744-744[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GAACAAGAAAGGAAAGAAAGU&UUUUUCUUUCCUUUCUUCUUC	4	0.99998263567328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN18576_c0_g1_752_TPlot.pdf
TRINITY_DN18576_c0_g1:797	si_a373	TRINITY_DN18576_c0_g1	786	806	797	-28.00	-18.70	0.667857142857143	8	4-18,803-789	1-3,806-804[UP5];19-21,788-786[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGACGAAAUCAUUUUUGAAAG&GGAUCAAAAAUGAUUUCGAAU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN18576_c0_g1_797_TPlot.pdf
TRINITY_DN18578_c0_g1:24	si_a501	TRINITY_DN18578_c0_g1	13	34	24	-33.50	-23.30	0.695522388059702	9	1-7,34-28;8-17,26-17;19-19,15-15	x-x,27-27[BULt];18-18,16-16[SIL];20-21,14-13[UP3]	..(.((((((((((.(((((((&)))))))-)))))))))).)..	GGUGGAGGAGGACGUAGGAACG&CGUUUUU-CGUCUUCCUUGGAA	0	0.232530952775184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN18578_c0_g1_24_TPlot.pdf
TRINITY_DN18578_c0_g1:25	si_a500	TRINITY_DN18578_c0_g1	14	35	25	-34.40	-24.90	0.723837209302326	7.5	1-8,35-28;9-18,26-17;20-20,15-15	x-x,27-27[BULt];19-19,16-16[SIL];21-21,14-14[UP3]	.(.((((((((((.((((((((&))))))))-)))))))))).).	GUGGAGGAGGACGUAGGAACGA&UCGUUUUU-CGUCUUCCUUGGA	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN18578_c0_g1_25_TPlot.pdf
TRINITY_DN18578_c0_g1:35	si_s71	TRINITY_DN18578_c0_g1	21	44	35	-25.70	-18.90	0.735408560311284	7.5	1-11,44-34;13-17,32-28;18-21,24-21	12-12,33-33[SIL];x-x,27-25[BULt]	((((...(((((.(((((((((((&))))))))))).)))))---))))	AGGACGUAGGAACGAGAAUAGAAG&CUUCUAUUUUUUUUCUU---UCCU	4	0.999999987090159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN18578_c0_g1_35_TPlot.pdf
TRINITY_DN18578_c0_g2:35	si_s71	TRINITY_DN18578_c0_g2	21	44	35	-25.70	-18.90	0.735408560311284	7.5	1-11,44-34;13-17,32-28;18-21,24-21	12-12,33-33[SIL];x-x,27-25[BULt]	((((...(((((.(((((((((((&))))))))))).)))))---))))	AGGACGUAGGAACGAGAAUAGAAG&CUUCUAUUUUUUUUCUU---UCCU	4	0.9999999949008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN18578_c0_g2_35_TPlot.pdf
TRINITY_DN18578_c0_g2:45	si_a785	TRINITY_DN18578_c0_g2	34	61	45	-25.90	-18.60	0.718146718146718	16.5	2-9,60-53;10-21,45-34	1-1,61-61[UP5];x-x,52-46[BULt]	((((((((((((.......((((((((.&.))))))))-------))))))))))))	GAGAAUAGAAGACCGUCUAAUAGAAGAC&CUCUUCUAU-------UUUUCUAUUUUC	4	0.999999742471099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN18578_c0_g2_45_TPlot.pdf
TRINITY_DN1857_c0_g1:515	si_a316	TRINITY_DN1857_c0_g1	504	524	515	-26.30	-18.00	0.684410646387833	8.5	1-2,524-523;5-8,520-517;10-21,515-504	3-4,522-521[SIL];9-9,516-516[SIL]	((((((((((((.((((..((&))..)))).))))))))))))	GAAGAAGUCAUGAAUGAUGCC&GGAUUUAUCCAUGAUUUUUUU	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN1857_c0_g1_515_TPlot.pdf
TRINITY_DN1857_c0_g1:548	si_s805	TRINITY_DN1857_c0_g1	537	557	548	-28.60	-21.40	0.748251748251748	7.5	1-6,557-552;8-19,550-539	7-7,551-551[SIL];20-21,538-537[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AUGGAGGGUGACGAUGAUGAA&UUUAUCUUCGUUACCUUUUCU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN1857_c0_g1_548_TPlot.pdf
TRINITY_DN1857_c0_g1:549	si_s804	TRINITY_DN1857_c0_g1	538	558	549	-27.90	-21.60	0.774193548387097	7	2-7,557-552;9-20,550-539	1-1,558-558[UP5];8-8,551-551[SIL];21-21,538-538[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	UGGAGGGUGACGAUGAUGAAG&UUUUAUCUUCGUUACCUUUUC	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN1857_c0_g1_549_TPlot.pdf
TRINITY_DN1857_c0_g1:550	si_s803	TRINITY_DN1857_c0_g1	539	559	550	-26.00	-21.60	0.830769230769231	8	3-8,557-552;10-21,550-539	1-2,559-558[UP5];9-9,551-551[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GGAGGGUGACGAUGAUGAAGA&AUUUUAUCUUCGUUACCUUUU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN1857_c0_g1_550_TPlot.pdf
TRINITY_DN1857_c0_g1:551	si_s802	TRINITY_DN1857_c0_g1	540	560	551	-26.40	-21.30	0.806818181818182	9.5	4-9,557-552;11-21,550-540	1-3,560-558[UP5];10-10,551-551[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAGGGUGACGAUGAUGAAGAG&UAUUUUAUCUUCGUUACCUUU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1857_c0_g1_551_TPlot.pdf
TRINITY_DN1857_c0_g1:552	si_s801	TRINITY_DN1857_c0_g1	541	561	552	-28.20	-20.00	0.709219858156028	11	5-10,557-552;12-21,550-541	1-4,561-558[UP5];11-11,551-551[SIL]	((((((((((.((((((....&....)))))).))))))))))	AGGGUGACGAUGAUGAAGAGG&GUAUUUUAUCUUCGUUACCUU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN1857_c0_g1_552_TPlot.pdf
TRINITY_DN1857_c0_g1:554	si_s799	TRINITY_DN1857_c0_g1	543	562	554	-30.00	-19.80	0.66	7.5	1-2,562-561;4-4,559-559;6-12,558-552;14-21,550-543	3-3,560-560[SIL];5-5,x-x[BULq];13-13,551-551[SIL]	((((((((.(((((((-(.((&)).).))))))).))))))))	GGUGACGAUGAUGAAG-AGGA&UCGUAUUUUAUCUUCGUUACC	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN1857_c0_g1_554_TPlot.pdf
TRINITY_DN18583_c0_g1:458	si_a118	TRINITY_DN18583_c0_g1	447	467	458	-30.70	-20.60	0.671009771986971	6.5	1-5,467-463;7-18,461-450	6-6,462-462[SIL];19-21,449-447[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AAGGCUAUGAAACAACCUUGU&ACGAGCUUGUUUUAUAGCAAU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN18583_c0_g1_458_TPlot.pdf
TRINITY_DN18586_c0_g1:24	si_s68	TRINITY_DN18586_c0_g1	13	33	24	-23.10	-15.10	0.653679653679654	13.5	6-20,28-14	1-5,33-29[UP5];21-21,13-13[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAGAGAGAAGAUGGACGCCU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN18586_c0_g1_24_TPlot.pdf
TRINITY_DN18588_c0_g1:330	si_a410	TRINITY_DN18588_c0_g1	319	339	330	-17.80	-11.70	0.657303370786517	11	2-15,338-325	1-1,339-339[UP5];16-21,324-319[UP3]	......((((((((((((((.&.))))))))))))))......	AAUAGCUAAAUGUAGACAGGU&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN18588_c0_g1_330_TPlot.pdf
TRINITY_DN1859_c0_g1:2070	si_a329	TRINITY_DN1859_c0_g1	2055	2079	2070	-29.60	-20.70	0.699324324324324	15	2-12,2078-2068;13-21,2063-2055	1-1,2079-2079[UP5];x-x,2067-2064[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	CGGGAUAGGCAUAGAGUGGAAGGAA&AUUUUUUUAUUC----CUUGUCCCG	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN1859_c0_g1_2070_TPlot.pdf
TRINITY_DN1859_c0_g1:2077	si_s76	TRINITY_DN1859_c0_g1	2066	2086	2077	-23.60	-16.00	0.677966101694915	10.5	4-15,2083-2072;17-20,2070-2067	1-3,2086-2084[UP5];16-16,2071-2071[SIL];21-21,2066-2066[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	UAGAGUGGAAGGAAGAAGUAA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1859_c0_g1_2077_TPlot.pdf
TRINITY_DN1859_c0_g1:2078	si_s75	TRINITY_DN1859_c0_g1	2067	2087	2078	-24.00	-16.00	0.666666666666667	11.5	5-16,2083-2072;18-21,2070-2067	1-4,2087-2084[UP5];17-17,2071-2071[SIL]	((((.((((((((((((....&....)))))))))))).))))	AGAGUGGAAGGAAGAAGUAAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1859_c0_g1_2078_TPlot.pdf
TRINITY_DN1859_c0_g1:3178	si_s207	TRINITY_DN1859_c0_g1	3168	3187	3178	-33.00	-22.10	0.66969696969697	7.5	2-15,3186-3173;18-19,3171-3170	1-1,3187-3187[UP5];16-17,3172-3172[AILq];20-21,3169-3168[UP3]	..((.-((((((((((((((.&.))))))))))))))..))..	UAUCU-GCAUAACUGGUGCAA&AUGUACCAGUUGUGUUCGAAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN1859_c0_g1_3178_TPlot.pdf
TRINITY_DN1859_c0_g1:3280	si_a327	TRINITY_DN1859_c0_g1	3269	3289	3280	-28.40	-19.70	0.693661971830986	6	1-5,3289-3285;7-12,3283-3278;15-21,3275-3269	6-6,3284-3284[SIL];13-14,3277-3276[SIL]	(((((((..((((((.(((((&))))).))))))..)))))))	GGACAAGAUAUAGAAUGAUCA&UGAUUUUUUUAUUCCUUGUCC	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN1859_c0_g1_3280_TPlot.pdf
TRINITY_DN1859_c0_g1:3317	si_s203	TRINITY_DN1859_c0_g1	3304	3325	3317	-35.50	-23.40	0.659154929577465	6.5	1-4,3325-3322;6-13,3321-3314;14-20,3311-3305	5-5,x-x[BULq];x-x,3313-3312[BULt];21-21,3304-3304[UP3]	.(((((((..((((((((-((((&)))).))))))))--))))))).	AGGCGCAAGUCUGGUACA-UCCA&UGGAAUGUACCAG--UUGUGUUC	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN1859_c0_g1_3317_TPlot.pdf
TRINITY_DN1859_c0_g1:3320	si_s200	TRINITY_DN1859_c0_g1	3307	3328	3320	-32.80	-22.20	0.676829268292683	7.5	3-7,3326-3322;9-16,3321-3314;17-21,3311-3307	1-2,3328-3327[UP5];8-8,x-x[BULq];x-x,3313-3312[BULt]	(((((..((((((((-(((((..&..))))).))))))))--)))))	CGCAAGUCUGGUACA-UCCAAUC&UUUUGGAAUGUACCAG--UUGUG	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN1859_c0_g1_3320_TPlot.pdf
TRINITY_DN1859_c0_g1:4885	si_a90	TRINITY_DN1859_c0_g1	4870	4894	4885	-27.90	-18.60	0.666666666666667	6.5	1-15,4894-4880;16-19,4875-4872	x-x,4879-4876[BULt];20-21,4871-4870[UP3]	..((((....(((((((((((((((&)))))))))))))))----))))..	CCUUGUGGAAUACCUUUUCUUAAUA&UAUUAAGAAAAGGUA----ACGAAG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a90_TRINITY_DN1859_c0_g1_4885_TPlot.pdf
TRINITY_DN1859_c0_g1:7326	si_a70	TRINITY_DN1859_c0_g1	7315	7336	7326	-23.90	-16.30	0.682008368200837	8.5	2-6,7335-7331;8-19,7328-7317	1-1,7336-7336[UP5];7-7,7330-7329[AILt];20-21,7316-7315[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	GUUGAGGAGCAAUUCGGAAAGU&UCUUUC-AAAUUGUUUUUCAUU	4	0.999999988113296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1859_c0_g1_7326_TPlot.pdf
TRINITY_DN1859_c0_g1:7327	si_a69	TRINITY_DN1859_c0_g1	7316	7337	7327	-24.00	-16.30	0.679166666666667	9.5	3-7,7335-7331;9-20,7328-7317	1-2,7337-7336[UP5];8-8,7330-7329[AILt];21-21,7316-7316[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	UUGAGGAGCAAUUCGGAAAGUG&UUCUUUC-AAAUUGUUUUUCAU	3	0.99999999487923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1859_c0_g1_7327_TPlot.pdf
TRINITY_DN1859_c0_g1:8463	si_a113	TRINITY_DN1859_c0_g1	8452	8473	8463	-26.20	-18.00	0.687022900763359	10	4-8,8470-8466;9-18,8464-8455	1-3,8473-8471[UP5];x-x,8465-8465[BULt];19-21,8454-8452[UP3]	...((((((((((.(((((...&...)))))-))))))))))...	GUAAAAACAAGCUACGUAUAUU&AAAAUACG-AGCUUGUUUUAUA	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN1859_c0_g1_8463_TPlot.pdf
TRINITY_DN1859_c0_g1:8464	si_a112	TRINITY_DN1859_c0_g1	8453	8474	8464	-26.20	-18.10	0.690839694656489	6	1-3,8474-8472;5-9,8470-8466;10-19,8464-8455	4-4,8471-8471[SIL];x-x,8465-8465[BULt];20-21,8454-8453[UP3]	..((((((((((.(((((.(((&))).)))))-))))))))))..	UAAAAACAAGCUACGUAUAUUA&UAAAAUACG-AGCUUGUUUUAU	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN1859_c0_g1_8464_TPlot.pdf
TRINITY_DN1859_c0_g1:8466	si_a111	TRINITY_DN1859_c0_g1	8454	8475	8466	-26.20	-18.10	0.690839694656489	6	2-4,8474-8472;6-10,8470-8466;11-20,8464-8455	1-1,8475-8475[UP5];5-5,8471-8471[SIL];x-x,8465-8465[BULt];21-21,8454-8454[UP3]	.((((((((((.(((((.(((.&.))).)))))-)))))))))).	AAAAACAAGCUACGUAUAUUAA&AUAAAAUACG-AGCUUGUUUUA	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN1859_c0_g1_8466_TPlot.pdf
TRINITY_DN1859_c0_g1:8604	si_s319	TRINITY_DN1859_c0_g1	8592	8613	8604	-31.30	-20.50	0.654952076677316	9.5	2-10,8612-8604;12-16,8602-8598;17-19,8596-8594	1-1,8613-8613[UP5];11-11,8603-8603[SIL];x-x,8597-8597[BULt];20-21,8593-8592[UP3]	..(((.(((((.(((((((((.&.))))))))).)))))-)))..	AGGUUCUGUGAGGAGGAGGAUG&UGUCCUUCUUGUUACA-AACAU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN1859_c0_g1_8604_TPlot.pdf
TRINITY_DN1859_c0_g1:8654	si_a512	TRINITY_DN1859_c0_g1	8643	8665	8654	-37.80	-25.80	0.682539682539683	8.5	1-9,8665-8657;11-18,8653-8646;20-20,8644-8644	10-10,8656-8654[AILt];19-19,8645-8645[SIL];21-21,8643-8643[UP3]	.(.((((((((...(((((((((&)))))))))--.)))))))).).	GUGGCCUUACAGAAUCCAAGGAA&UUCCUUGGA--AUGUAAGGCGGA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN1859_c0_g1_8654_TPlot.pdf
TRINITY_DN1859_c4_g1:564	si_a281	TRINITY_DN1859_c4_g1	553	574	564	-31.70	-22.20	0.700315457413249	9	1-6,574-569;7-10,567-564;12-18,562-556	x-x,568-568[BULt];11-11,563-563[SIL];19-21,555-553[UP3]	...(((((((.((((.((((((&))))))-)))).)))))))...	GGUGUCCGAGGGGUCGUUUUCG&CGAAAA-GAUCGCUUGGAUUUA	1	0.0158881615441476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a281_TRINITY_DN1859_c4_g1_564_TPlot.pdf
TRINITY_DN1859_c4_g1:565	si_a280	TRINITY_DN1859_c4_g1	554	575	565	-32.10	-22.20	0.691588785046729	9	2-7,574-569;8-11,567-564;13-19,562-556	1-1,575-575[UP5];x-x,568-568[BULt];12-12,563-563[SIL];20-21,555-554[UP3]	..(((((((.((((.((((((.&.))))))-)))).)))))))..	GUGUCCGAGGGGUCGUUUUCGA&ACGAAAA-GAUCGCUUGGAUUU	1	0.0187936371322712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN1859_c4_g1_565_TPlot.pdf
TRINITY_DN185_c0_g1:2894	si_a652	TRINITY_DN185_c0_g1	2883	2904	2894	-31.90	-20.80	0.652037617554859	12.5	6-9,2899-2896;10-20,2894-2884	1-5,2904-2900[UP5];x-x,2895-2895[BULt];21-21,2883-2883[UP3]	.(((((((((((.((((.....&.....))))-))))))))))).	GAGGUAUUUCCCUGAUACGCAA&UAAUAUAUC-GGGAAAUGCCUA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN185_c0_g1_2894_TPlot.pdf
TRINITY_DN185_c0_g4:355	si_s72	TRINITY_DN185_c0_g4	344	365	355	-24.10	-16.20	0.672199170124481	9.5	2-8,364-358;11-21,354-344	1-1,365-365[UP5];9-10,357-355[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	AGGGGAAGGAACCCAAAUGGAC&UUCUAUUU-UUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN185_c0_g4_355_TPlot.pdf
TRINITY_DN185_c0_g4:696	si_a472	TRINITY_DN185_c0_g4	685	706	696	-21.50	-14.70	0.683720930232558	7.5	1-4,706-703;6-6,701-701;7-20,699-686	5-5,702-702[SIL];x-x,700-700[BULt];21-21,685-685[UP3]	.((((((((((((((.(.((((&)))).)-)))))))))))))).	GAUAUAGCAGUAAUUCAGGUAU&AUAUGU-AAUUAUUGUUAUAUA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN185_c0_g4_696_TPlot.pdf
TRINITY_DN185_c0_g4:997	si_s196	TRINITY_DN185_c0_g4	985	1006	997	-29.30	-19.20	0.655290102389078	12	6-15,1001-992;16-21,990-985	1-5,1006-1002[UP5];x-x,991-991[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	AUUGGUAGCAUUCCAGACGCUG&AUUAUUUUGGAAUGU-ACCAGU	2	0.993115340016426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN185_c0_g4_997_TPlot.pdf
TRINITY_DN18600_c0_g1:235	si_a486	TRINITY_DN18600_c0_g1	224	244	235	-24.90	-16.50	0.662650602409639	8.5	1-14,244-231;17-19,228-226	15-16,230-229[SIL];20-21,225-224[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN18600_c0_g1_235_TPlot.pdf
TRINITY_DN18603_c0_g1:423	si_s132	TRINITY_DN18603_c0_g1	412	432	423	-28.40	-18.50	0.651408450704225	9	3-15,430-418	1-2,432-431[UP5];16-21,417-412[UP3]	......(((((((((((((..&..)))))))))))))......	AUAUUGGAUUGAUUCAACUAA&AGAGUUGAAUCAAUCAAAAAC	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN18603_c0_g1_423_TPlot.pdf
TRINITY_DN18603_c0_g1:424	si_s131	TRINITY_DN18603_c0_g1	413	433	424	-26.70	-18.50	0.692883895131086	10	4-16,430-418	1-3,433-431[UP5];17-21,417-413[UP3]	.....(((((((((((((...&...))))))))))))).....	UAUUGGAUUGAUUCAACUAAA&AAGAGUUGAAUCAAUCAAAAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN18603_c0_g1_424_TPlot.pdf
TRINITY_DN18603_c0_g1:816	si_s599	TRINITY_DN18603_c0_g1	805	825	816	-27.80	-18.10	0.651079136690648	9	1-12,825-814	13-21,813-805[UP3]	.........((((((((((((&)))))))))))).........	CCGCGUACAUCGCUUGGAUUU&AAAUCCAAGCGAAUCUUUUUU	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN18603_c0_g1_816_TPlot.pdf
TRINITY_DN18603_c0_g1:824	si_s612	TRINITY_DN18603_c0_g1	813	832	824	-28.20	-20.50	0.726950354609929	6	2-6,831-827;9-21,825-813	1-1,832-832[UP5];7-8,826-826[AILq]	(((((((((((((.-(((((.&.)))))..)))))))))))))	AUCGCUUGGAUUUC-AAAGGU&UCUUUUUUAAAUCCAAGCGAU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN18603_c0_g1_824_TPlot.pdf
TRINITY_DN18603_c0_g1:825	si_s611	TRINITY_DN18603_c0_g1	814	832	825	-28.20	-20.40	0.723404255319149	7	1-6,832-827;10-21,825-814	7-9,826-826[AILq]	((((((((((((.--((((((&))))))...))))))))))))	UCGCUUGGAUUUC--AAAGGU&AUCUUUUUUAAAUCCAAGCGA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN18603_c0_g1_825_TPlot.pdf
TRINITY_DN18603_c0_g1:85	si_s6	TRINITY_DN18603_c0_g1	74	93	85	-21.70	-15.10	0.695852534562212	5	2-8,92-86;10-19,85-76	1-1,93-93[UP5];9-9,x-x[BULq];20-21,75-74[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	UUUAGUAAUAAU-AGUAAUAG&AUAUUACUUAUUAUUACUAUA	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN18603_c0_g1_85_TPlot.pdf
TRINITY_DN18603_c0_g1:86	si_s4	TRINITY_DN18603_c0_g1	76	95	86	-21.60	-15.00	0.694444444444444	7	4-10,92-86;12-21,85-76	1-3,95-93[UP5];11-11,x-x[BULq]	((((((((((-(((((((...&...))))))).))))))))))	UAGUAAUAAU-AGUAAUAGUA&UUAUAUUACUUAUUAUUACUA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN18603_c0_g1_86_TPlot.pdf
TRINITY_DN18613_c0_g1:730	si_a357	TRINITY_DN18613_c0_g1	719	739	730	-28.80	-20.60	0.715277777777778	2.5	1-12,739-728;14-17,726-723;19-21,721-719	13-13,727-727[SIL];18-18,722-722[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	GAUGUGAUGAAAAUAGAAUUA&UAAUUCUAUUUUGAUCGGAUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN18613_c0_g1_730_TPlot.pdf
TRINITY_DN1861_c0_g1:1529	si_a39	TRINITY_DN1861_c0_g1	1518	1537	1529	-40.10	-29.40	0.733167082294264	4.5	1-4,1537-1534;6-21,1533-1518	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	CUCCUAGAUCUAUUGG-CUUA&UAAGACCGGUAGGUCUAGGAG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a39_TRINITY_DN1861_c0_g1_1529_TPlot.pdf
TRINITY_DN1861_c0_g1:2084	si_a762	TRINITY_DN1861_c0_g1	2073	2093	2084	-29.70	-19.40	0.653198653198653	4.5	1-16,2093-2078;18-18,2076-2076;20-21,2074-2073	17-17,2077-2077[SIL];19-19,2075-2075[SIL]	((.(.((((((((((((((((&)))))))))))))))).).))	GAUUGGAUCAAAAAUUCAAAG&CUUUGGGUUUUUGAUUGAUUC	4	0.999999999924374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN1861_c0_g1_2084_TPlot.pdf
TRINITY_DN1861_c0_g1:2591	si_s352	TRINITY_DN1861_c0_g1	2580	2600	2591	-27.20	-18.70	0.6875	3.5	1-13,2600-2588;15-20,2586-2581	14-14,2587-2587[SIL];21-21,2580-2580[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AUCAAUCGAUUUUUUUAUCUU&GAGAUAAAGAAAUAGAUUGAA	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN1861_c0_g1_2591_TPlot.pdf
TRINITY_DN18621_c0_g1:210	si_a405	TRINITY_DN18621_c0_g1	198	219	210	-19.80	-13.70	0.691919191919192	5	2-13,218-207;15-20,204-199	1-1,219-219[UP5];14-14,206-205[AILt];21-21,198-198[UP3]	.((((((..((((((((((((.&.))))))))))))-.)))))).	GUAAAUAAAAAACAAGACAAUA&AAUUGUUUUGUUU-AUAUUUAA	2	0.99999999813598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN18621_c0_g1_210_TPlot.pdf
TRINITY_DN18623_c0_g1:165	si_a418	TRINITY_DN18623_c0_g1	150	174	165	-21.20	-14.50	0.683962264150943	10	2-10,173-165;11-20,160-151	1-1,174-174[UP5];x-x,164-161[BULt];21-21,150-150[UP3]	.((((((((((....(((((((((.&.)))))))))----)))))))))).	UUCCUAUAUUUUACCAUUUAAAUAC&AUAUUUAAAU----AAAUAUAGGAU	0	0.0783119158061402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN18623_c0_g1_165_TPlot.pdf
TRINITY_DN18623_c0_g1:166	si_a417	TRINITY_DN18623_c0_g1	151	175	166	-21.40	-14.40	0.672897196261682	11	3-11,173-165;12-21,160-151	1-2,175-174[UP5];x-x,164-161[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	UCCUAUAUUUUACCAUUUAAAUACA&UAUAUUUAAAU----AAAUAUAGGA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN18623_c0_g1_166_TPlot.pdf
TRINITY_DN18627_c0_g1:1086	si_s623	TRINITY_DN18627_c0_g1	1077	1095	1086	-36.40	-23.70	0.651098901098901	6.5	1-5,1095-1091;7-11,1089-1085;15-21,1083-1077	6-6,1090-1090[SIL];12-14,1084-1084[AILq]	(((((((.--(((((.(((((&))))).)))))...)))))))	CCUAUGAU--GAUCGGUUGGA&UCCAAGCGAUCUUUUCGUAGG	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN18627_c0_g1_1086_TPlot.pdf
TRINITY_DN18627_c0_g1:1528	si_a459	TRINITY_DN18627_c0_g1	1517	1537	1528	-23.20	-15.50	0.668103448275862	6.5	1-4,1537-1534;6-18,1532-1520	5-5,1533-1533[SIL];19-21,1519-1517[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CACCAUAUUAUGUAUAUCAAU&GUUGUUAUAUAUAAUAUGUAA	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN18627_c0_g1_1528_TPlot.pdf
TRINITY_DN18627_c0_g1:1654	si_a449	TRINITY_DN18627_c0_g1	1643	1664	1654	-25.70	-17.80	0.692607003891051	6.5	1-7,1664-1658;8-18,1656-1646	x-x,1657-1657[BULt];19-21,1645-1643[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	AAAAUAAUAACGAUAUAUCUCA&UGAGAUA-AUUGUUGUUAUAUA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN18627_c0_g1_1654_TPlot.pdf
TRINITY_DN18627_c0_g1:1655	si_a448	TRINITY_DN18627_c0_g1	1644	1665	1655	-25.50	-17.80	0.698039215686275	6.5	2-8,1664-1658;9-19,1656-1646	1-1,1665-1665[UP5];x-x,1657-1657[BULt];20-21,1645-1644[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	AAAUAAUAACGAUAUAUCUCAG&AUGAGAUA-AUUGUUGUUAUAU	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN18627_c0_g1_1655_TPlot.pdf
TRINITY_DN1862_c0_g1:712	si_a500	TRINITY_DN1862_c0_g1	701	721	712	-34.40	-24.50	0.712209302325581	5	1-11,721-711;14-18,708-704;20-21,702-701	12-13,710-709[SIL];19-19,703-703[SIL]	((.(((((..(((((((((((&)))))))))))..))))).))	UCGAAGGAUUACGGAAAACGA&UCGUUUUUCGUCUUCCUUGGA	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1862_c0_g1_712_TPlot.pdf
TRINITY_DN1862_c0_g1:714	si_a498	TRINITY_DN1862_c0_g1	703	723	714	-33.50	-21.80	0.650746268656716	6.5	1-1,723-723;3-13,721-711;16-20,708-704	2-2,722-722[SIL];14-15,710-709[SIL];21-21,703-703[UP3]	.(((((..(((((((((((.(&).)))))))))))..))))).	GAAGGAUUACGGAAAACGAGG&UGUCGUUUUUCGUCUUCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1862_c0_g1_714_TPlot.pdf
TRINITY_DN1862_c0_g1:715	si_a497	TRINITY_DN1862_c0_g1	704	724	715	-32.00	-22.60	0.70625	6	1-2,724-723;4-14,721-711;17-21,708-704	3-3,722-722[SIL];15-16,710-709[SIL]	(((((..(((((((((((.((&)).)))))))))))..)))))	AAGGAUUACGGAAAACGAGGU&AUGUCGUUUUUCGUCUUCCUU	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1862_c0_g1_715_TPlot.pdf
TRINITY_DN1862_c0_g1:744	si_a764	TRINITY_DN1862_c0_g1	727	753	744	-28.90	-19.20	0.664359861591695	11	1-16,753-738;17-21,731-727	x-x,737-732[BULt]	(((((......((((((((((((((((&))))))))))))))))------)))))	UUGAGACUAAUUCAAUCAGGAAUCCGG&UUGGGUUUUUGAUUGA------UUCAA	3	0.999999893314632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1862_c0_g1_744_TPlot.pdf
TRINITY_DN1862_c0_g1:745	si_a763	TRINITY_DN1862_c0_g1	734	754	745	-28.80	-18.80	0.652777777777778	10	2-17,753-738	1-1,754-754[UP5];18-21,737-734[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAAUUCAAUCAGGAAUCCGGC&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN1862_c0_g1_745_TPlot.pdf
TRINITY_DN18632_c0_g1:1635	si_s800	TRINITY_DN18632_c0_g1	1621	1644	1635	-29.70	-21.50	0.723905723905724	10.5	2-10,1643-1635;11-20,1631-1622	1-1,1644-1644[UP5];x-x,1634-1632[BULt];21-21,1621-1621[UP3]	.((((((((((...(((((((((.&.)))))))))---)))))))))).	UGGUAACGGAGUCUAUAAGAUGCC&CGUAUUUUAU---CUUCGUUACCU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN18632_c0_g1_1635_TPlot.pdf
TRINITY_DN18632_c0_g1:2307	si_s23	TRINITY_DN18632_c0_g1	2298	2316	2307	-27.00	-19.60	0.725925925925926	3	1-13,2316-2304;16-21,2303-2298	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	GAUUUA--UGCAAUCAAUGUA&UAUAUUGAUUGCAACUAAAUC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN18632_c0_g1_2307_TPlot.pdf
TRINITY_DN1863_c0_g2:101	si_s86	TRINITY_DN1863_c0_g2	90	110	101	-32.90	-22.20	0.674772036474164	3	2-14,109-97;16-18,96-94;19-21,92-90	1-1,110-110[UP5];15-15,x-x[BULq];x-x,93-93[BULt]	(((.(((-(((((((((((((.&.))))))))))))).)))-)))	AGCUGAA-AAGAAGAAAGGAAU&UUUCCUUUCUUCUUCUUC-GCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1863_c0_g2_101_TPlot.pdf
TRINITY_DN1864_c0_g1:1240	si_s603	TRINITY_DN1864_c0_g1	1228	1250	1240	-27.20	-18.00	0.661764705882353	9.5	1-8,1250-1243;9-13,1241-1237;14-18,1235-1231	x-x,1242-1242[BULt];x-x,1236-1236[BULt];19-21,1230-1228[UP3]	...(((((.(((((.((((((((&))))))))-)))))-)))))...	CACUGAGAUGGGGUAUCGCUUGG&CCAAGCGA-AUCUU-UUUUAAAU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN1864_c0_g1_1240_TPlot.pdf
TRINITY_DN1864_c0_g1:1341	si_s71	TRINITY_DN1864_c0_g1	1330	1351	1341	-25.70	-17.60	0.684824902723736	10	3-6,1349-1346;8-21,1343-1330	1-2,1351-1350[UP5];7-7,1345-1344[AILt]	((((((((((((((..((((..&..))))-.))))))))))))))	GGGAGAGAAAGAAACCUGGACA&CUUCUA-UUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1864_c0_g1_1341_TPlot.pdf
TRINITY_DN18656_c0_g1:400	si_a318	TRINITY_DN18656_c0_g1	389	409	400	-22.50	-15.90	0.706666666666667	7	2-17,408-393	1-1,409-409[UP5];18-21,392-389[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUGUAAAGGUUAUGGAUAAAG&AUUUAUCCAUGAUUUUUUUAU	4	0.999998884855311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN18656_c0_g1_400_TPlot.pdf
TRINITY_DN18662_c2_g1:752	si_s2	TRINITY_DN18662_c2_g1	741	761	752	-20.50	-13.80	0.673170731707317	16	8-21,754-741	1-7,761-755[UP5]	((((((((((((((.......&.......))))))))))))))	GUAAUGAUGGGUGACAAAUCA&UUUUAUAUUACUUAUUAUUAC	2	0.996067721423274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN18662_c2_g1_752_TPlot.pdf
TRINITY_DN18662_c3_g1:82	si_a812	TRINITY_DN18662_c3_g1	71	92	82	-34.80	-23.60	0.67816091954023	7	1-4,92-89;5-16,87-76	x-x,88-88[BULt];17-21,75-71[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	UAGGAUCUUCUUCUUCGACUUC&GAAG-CGAAGAAGAAGAAAGGA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN18662_c3_g1_82_TPlot.pdf
TRINITY_DN18662_c3_g1:83	si_a811	TRINITY_DN18662_c3_g1	72	93	83	-35.30	-23.70	0.671388101983003	7	2-5,92-89;6-17,87-76	1-1,93-93[UP5];x-x,88-88[BULt];18-21,75-72[UP3]	....((((((((((((.((((.&.))))-))))))))))))....	AGGAUCUUCUUCUUCGACUUCA&CGAAG-CGAAGAAGAAGAAAGG	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a811_TRINITY_DN18662_c3_g1_83_TPlot.pdf
TRINITY_DN18662_c3_g1:85	si_a809	TRINITY_DN18662_c3_g1	74	95	85	-34.70	-23.70	0.682997118155619	9	4-7,92-89;8-19,87-76	1-3,95-93[UP5];x-x,88-88[BULt];20-21,75-74[UP3]	..((((((((((((.((((...&...))))-))))))))))))..	GAUCUUCUUCUUCGACUUCAUG&UCCGAAG-CGAAGAAGAAGAAA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN18662_c3_g1_85_TPlot.pdf
TRINITY_DN18667_c0_g1:326	si_a804	TRINITY_DN18667_c0_g1	307	335	326	-37.20	-24.60	0.661290322580645	10	1-13,335-323;14-16,314-312;18-21,310-307	x-x,322-315[BULt];17-17,311-311[SIL]	((((.(((........(((((((((((((&)))))))))))))--------))).))))	UCUUGUUCCUGUGGAUGUUUCGGAUUGGA&UCCAAUCCGAAGC--------GAAGAAGA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN18667_c0_g1_326_TPlot.pdf
TRINITY_DN1866_c0_g1:1044	si_a458	TRINITY_DN1866_c0_g1	1033	1053	1044	-23.80	-17.40	0.73109243697479	7.5	1-6,1053-1048;9-20,1045-1034	7-8,1047-1046[SIL];21-21,1033-1033[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CACAUAUUGUAUGCCACAGCA&UGUUGUUAUAUAUAAUAUGUA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN1866_c0_g1_1044_TPlot.pdf
TRINITY_DN18671_c0_g1:1093	si_a705	TRINITY_DN18671_c0_g1	1080	1102	1093	-30.50	-20.48	0.671475409836066	8	2-16,1101-1087;19-21,1082-1080	1-1,1102-1102[UP5];17-18,1086-1083[AILt]	(((....(((((((((((((((.&.)))))))))))))))--..)))	GAUGUGUUUUUGGGAUGUGCUAA&CUGGUACAUUCCAAAA--UAAUC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN18671_c0_g1_1093_TPlot.pdf
TRINITY_DN18671_c0_g1:2723	si_a454	TRINITY_DN18671_c0_g1	2709	2732	2723	-21.30	-13.92	0.653521126760563	14	1-10,2732-2723;13-20,2717-2710	11-12,2722-2718[AILt];21-21,2709-2709[UP3]	.((((((((.....((((((((((&))))))))))---..)))))))).	GGUUAUAUGAAAAUGCGACAAUUA&UAAUUGUUGU---UAUAUAUAAUA	4	0.999999990527863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN18671_c0_g1_2723_TPlot.pdf
TRINITY_DN18671_c0_g1:3065	si_a635	TRINITY_DN18671_c0_g1	3054	3074	3065	-26.10	-17.40	0.666666666666667	9	1-8,3074-3067;11-18,3064-3057	9-10,3066-3065[SIL];19-21,3056-3054[UP3]	...((((((((..((((((((&))))))))..))))))))...	UAGACUCGGAACUAUCGAUAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999999999673675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN18671_c0_g1_3065_TPlot.pdf
TRINITY_DN18671_c0_g1:3066	si_a634	TRINITY_DN18671_c0_g1	3055	3075	3066	-26.40	-17.40	0.659090909090909	9	2-9,3074-3067;12-19,3064-3057	1-1,3075-3075[UP5];10-11,3066-3065[SIL];20-21,3056-3055[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	AGACUCGGAACUAUCGAUAUU&UAUGUCGAUUUUUUUGAGUAA	2	0.999999094514339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN18671_c0_g1_3066_TPlot.pdf
TRINITY_DN18671_c0_g1:3067	si_a633	TRINITY_DN18671_c0_g1	3056	3076	3067	-26.40	-17.40	0.659090909090909	10	3-10,3074-3067;13-20,3064-3057	1-2,3076-3075[UP5];11-12,3066-3065[SIL];21-21,3056-3056[UP3]	.((((((((..((((((((..&..))))))))..)))))))).	GACUCGGAACUAUCGAUAUUG&UUAUGUCGAUUUUUUUGAGUA	2	0.999999276253811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN18671_c0_g1_3067_TPlot.pdf
TRINITY_DN18671_c0_g1:3560	si_s888	TRINITY_DN18671_c0_g1	3547	3569	3560	-26.80	-18.20	0.67910447761194	11	6-14,3564-3556;15-21,3553-3547	1-5,3569-3565[UP5];x-x,3555-3554[BULt]	(((((((..(((((((((.....&.....)))))))))--)))))))	AAGAGAAGCAGCCUAUUUUUUAG&AAAAUAAAUAGGCU--UUCUCUU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN18671_c0_g1_3560_TPlot.pdf
TRINITY_DN18674_c0_g1:168	si_s58	TRINITY_DN18674_c0_g1	154	177	168	-29.30	-21.90	0.747440273037543	8	1-12,177-166;13-14,162-161;16-21,159-154	x-x,165-163[BULt];15-15,160-160[SIL]	((((((.((...((((((((((((&))))))))))))---)).))))))	AAUAGAUGUAGAUGCUGACUUGAA&UUCAAGUUAGCA---ACUUCUAUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN18674_c0_g1_168_TPlot.pdf
TRINITY_DN18675_c0_g1:1539	si_a790	TRINITY_DN18675_c0_g1	1528	1548	1539	-25.80	-17.20	0.666666666666667	9	1-2,1548-1547;4-10,1545-1539;13-21,1536-1528	3-3,1546-1546[SIL];11-12,1538-1537[SIL]	(((((((((..(((((((.((&)).)))))))..)))))))))	GGUUGGGAAUAGGAAAGAAAG&CUAUUUUUCUAUUUUCCAAUC	3	0.999999461173891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN18675_c0_g1_1539_TPlot.pdf
TRINITY_DN18675_c0_g1:1540	si_a789	TRINITY_DN18675_c0_g1	1529	1549	1540	-24.80	-16.50	0.665322580645161	8	1-3,1549-1547;5-11,1545-1539;14-21,1536-1529	4-4,1546-1546[SIL];12-13,1538-1537[SIL]	((((((((..(((((((.(((&))).)))))))..))))))))	GUUGGGAAUAGGAAAGAAAGA&UCUAUUUUUCUAUUUUCCAAU	2	0.999999909447127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN18675_c0_g1_1540_TPlot.pdf
TRINITY_DN18675_c0_g1:1543	si_s77	TRINITY_DN18675_c0_g1	1531	1552	1543	-25.50	-16.90	0.662745098039216	9	4-15,1549-1538;16-20,1536-1532	1-3,1552-1550[UP5];x-x,1537-1537[BULt];21-21,1531-1531[UP3]	.(((((.((((((((((((...&...))))))))))))-))))).	UGGGAAUAGGAAAGAAAGACAA&UUUUUUUUCUUUCCU-UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN18675_c0_g1_1543_TPlot.pdf
TRINITY_DN18675_c0_g1:1545	si_s75	TRINITY_DN18675_c0_g1	1533	1554	1545	-24.00	-16.60	0.691666666666667	11.5	6-17,1549-1538;18-21,1536-1533	1-5,1554-1550[UP5];x-x,1537-1537[BULt]	((((.((((((((((((.....&.....))))))))))))-))))	GGAAUAGGAAAGAAAGACAACG&UAUUUUUUUUCUUUCCU-UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18675_c0_g1_1545_TPlot.pdf
TRINITY_DN18675_c0_g1:1553	si_a69	TRINITY_DN18675_c0_g1	1542	1562	1553	-24.00	-16.08	0.67	9.5	1-7,1562-1556;11-19,1552-1544	8-10,1555-1553[SIL];20-21,1543-1542[UP3]	..(((((((((...(((((((&)))))))...)))))))))..	AAGAAAGACAACGGGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	2	0.999999421516465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN18675_c0_g1_1553_TPlot.pdf
TRINITY_DN18675_c0_g1:1972	si_a142	TRINITY_DN18675_c0_g1	1961	1982	1972	-23.50	-16.70	0.71063829787234	7.5	2-5,1981-1978;6-19,1976-1963	1-1,1982-1982[UP5];x-x,1977-1977[BULt];20-21,1962-1961[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	AAGAGGCAACAAUGAUGUAAUA&AAUUA-AUCGUUGUUGUUUUAA	2	0.998472989752493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN18675_c0_g1_1972_TPlot.pdf
TRINITY_DN18677_c0_g1:1255	si_s83	TRINITY_DN18677_c0_g1	1244	1264	1255	-30.90	-21.40	0.692556634304207	6.5	4-17,1261-1248;19-21,1246-1244	1-3,1264-1262[UP5];18-18,1247-1247[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GAAAGAGAAGAAAGGAAAACA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN18677_c0_g1_1255_TPlot.pdf
TRINITY_DN18677_c0_g1:15	si_a547	TRINITY_DN18677_c0_g1	6	24	15	-26.90	-17.80	0.661710037174721	8	1-10,24-15;14-21,13-6	11-13,14-14[AILq]	((((((((.--((((((((((&))))))))))...))))))))	AGAUAAAGU--UAGGUUGGGC&GUUCAAUCUAUUUCUUUAUCU	4	0.999987774819383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN18677_c0_g1_15_TPlot.pdf
TRINITY_DN18677_c0_g1:421	si_s509	TRINITY_DN18677_c0_g1	410	430	421	-22.80	-15.50	0.679824561403509	10	3-15,428-416	1-2,430-429[UP5];16-21,415-410[UP3]	......(((((((((((((..&..)))))))))))))......	UUGAGUGAAUAUGGAAUUGCU&AACAAUUCUAUAUUCUUAAUU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN18677_c0_g1_421_TPlot.pdf
TRINITY_DN18677_c0_g1:5792	si_s547	TRINITY_DN18677_c0_g1	5781	5805	5792	-24.00	-16.66	0.694166666666667	13.5	1-8,5805-5798;11-20,5791-5782	9-10,5797-5792[AILt];21-21,5781-5781[UP3]	.((((((((((......((((((((&))))))))----..)))))))))).	UUGUUAAUUCUUUCGAGUUUGAUCG&CGAUCAAA----AUAGAAUUAAUAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN18677_c0_g1_5792_TPlot.pdf
TRINITY_DN18677_c0_g1:820	si_s38	TRINITY_DN18677_c0_g1	809	829	820	-22.70	-15.00	0.66079295154185	10	4-9,826-821;11-21,819-809	1-3,829-827[UP5];10-10,820-820[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAUCUAGUUGUAAGAGAUAAA&UAAAUCUUUAAUAAUUGGAUU	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN18677_c0_g1_820_TPlot.pdf
TRINITY_DN18677_c0_g1:931	si_s525	TRINITY_DN18677_c0_g1	920	940	931	-24.00	-17.50	0.729166666666667	5	1-14,940-927;17-19,924-922	15-16,926-925[SIL];20-21,921-920[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	AGCAAUUAUGAUUUUGAAUUA&UAAUUCGAAAUCAUUUUUGAU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN18677_c0_g1_931_TPlot.pdf
TRINITY_DN18677_c0_g1:933	si_s523	TRINITY_DN18677_c0_g1	922	942	933	-24.50	-17.90	0.730612244897959	5	2-16,941-927;19-21,924-922	1-1,942-942[UP5];17-18,926-925[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	CAAUUAUGAUUUUGAAUUAGU&CUUAAUUCGAAAUCAUUUUUG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN18677_c0_g1_933_TPlot.pdf
TRINITY_DN18689_c0_g1:61	si_s830	TRINITY_DN18689_c0_g1	50	70	61	-23.90	-16.20	0.677824267782427	4	1-9,70-62;11-21,60-50	10-10,61-61[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UUUUUCAAGUUAUUUUUCGUU&AAUGAAAAACAAUUUGAAAGA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN18689_c0_g1_61_TPlot.pdf
TRINITY_DN1868_c0_g1:1278	si_s74	TRINITY_DN1868_c0_g1	1267	1287	1278	-25.00	-17.60	0.704	10	4-20,1284-1268	1-3,1287-1285[UP5];21-21,1267-1267[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGGGGAAGAGGAAGAAGUC&CUAUUUUUUUUCUUUCCUUUC	2	0.999999997888926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1868_c0_g1_1278_TPlot.pdf
TRINITY_DN1868_c0_g1:664	si_s811	TRINITY_DN1868_c0_g1	653	673	664	-26.40	-19.50	0.738636363636364	8	1-10,673-664;12-19,662-655	11-11,663-663[SIL];20-21,654-653[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GAGUUGGGAACAGGUGAUGAG&UUCGUUACCUUUUCUUAAUAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN1868_c0_g1_664_TPlot.pdf
TRINITY_DN1868_c0_g1:665	si_s810	TRINITY_DN1868_c0_g1	654	674	665	-27.90	-19.70	0.706093189964158	8.5	2-11,673-664;13-20,662-655	1-1,674-674[UP5];12-12,663-663[SIL];21-21,654-654[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	AGUUGGGAACAGGUGAUGAGU&CUUCGUUACCUUUUCUUAAUA	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN1868_c0_g1_665_TPlot.pdf
TRINITY_DN18694_c0_g2:1351	si_a351	TRINITY_DN18694_c0_g2	1340	1360	1351	-20.50	-14.30	0.697560975609756	9	4-19,1357-1342	1-3,1360-1358[UP5];20-21,1341-1340[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAUAGAAUAGAAUUGAUAGAA&AAAUAUUAAUUCUAUUUUGAU	2	0.983340638461441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN18694_c0_g2_1351_TPlot.pdf
TRINITY_DN18694_c0_g2:1353	si_a349	TRINITY_DN18694_c0_g2	1342	1362	1353	-21.30	-14.30	0.671361502347418	11	6-21,1357-1342	1-5,1362-1358[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAGAAUAGAAUUGAUAGAAAU&GAAAAUAUUAAUUCUAUUUUG	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN18694_c0_g2_1353_TPlot.pdf
TRINITY_DN186_c0_g1:1418	si_s380	TRINITY_DN186_c0_g1	1407	1433	1418	-40.00	-26.20	0.655	17	1-9,1433-1425;10-15,1418-1413;18-21,1410-1407	x-x,1424-1419[BULt];16-17,1412-1411[SIL]	((((..((((((......(((((((((&)))))))))------))))))..))))	GAUGCUGGGCGGGCAGGAGCACGUGAG&CUCGCGUGU------CCGCCUUACAUU	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN186_c0_g1_1418_TPlot.pdf
TRINITY_DN186_c0_g1:1425	si_s379	TRINITY_DN186_c0_g1	1408	1434	1425	-42.50	-29.40	0.691764705882353	16.5	1-10,1434-1425;11-16,1418-1413;19-21,1410-1408	x-x,1424-1419[BULt];17-18,1412-1411[SIL]	(((..((((((......((((((((((&))))))))))------))))))..)))	AUGCUGGGCGGGCAGGAGCACGUGAGC&GCUCGCGUGU------CCGCCUUACAU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN186_c0_g1_1425_TPlot.pdf
TRINITY_DN186_c0_g1:1426	si_s378	TRINITY_DN186_c0_g1	1409	1435	1426	-43.80	-29.90	0.682648401826484	16.5	1-11,1435-1425;12-17,1418-1413;20-21,1410-1409	x-x,1424-1419[BULt];18-19,1412-1411[SIL]	((..((((((......(((((((((((&)))))))))))------))))))..))	UGCUGGGCGGGCAGGAGCACGUGAGCG&CGCUCGCGUGU------CCGCCUUACA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN186_c0_g1_1426_TPlot.pdf
TRINITY_DN186_c0_g1:1427	si_s377	TRINITY_DN186_c0_g1	1410	1436	1427	-44.10	-29.60	0.671201814058957	18.5	2-12,1435-1425;13-18,1418-1413	1-1,1436-1436[UP5];x-x,1424-1419[BULt];19-21,1412-1410[UP3]	...((((((......(((((((((((.&.)))))))))))------))))))...	GCUGGGCGGGCAGGAGCACGUGAGCGU&UCGCUCGCGUGU------CCGCCUUAC	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN186_c0_g1_1427_TPlot.pdf
TRINITY_DN186_c0_g1:1428	si_s376	TRINITY_DN186_c0_g1	1411	1437	1428	-42.50	-29.60	0.696470588235294	13	3-13,1435-1425;14-19,1418-1413	1-2,1437-1436[UP5];x-x,1424-1419[BULt];20-21,1412-1411[UP3]	..((((((......(((((((((((..&..)))))))))))------))))))..	CUGGGCGGGCAGGAGCACGUGAGCGUG&AUCGCUCGCGUGU------CCGCCUUA	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN186_c0_g1_1428_TPlot.pdf
TRINITY_DN186_c0_g1:1429	si_s375	TRINITY_DN186_c0_g1	1412	1438	1429	-44.10	-29.60	0.671201814058957	14	4-14,1435-1425;15-20,1418-1413	1-3,1438-1436[UP5];x-x,1424-1419[BULt];21-21,1412-1412[UP3]	.((((((......(((((((((((...&...)))))))))))------)))))).	UGGGCGGGCAGGAGCACGUGAGCGUGA&GAUCGCUCGCGUGU------CCGCCUU	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN186_c0_g1_1429_TPlot.pdf
TRINITY_DN186_c0_g1:1430	si_s374	TRINITY_DN186_c0_g1	1413	1441	1430	-45.60	-29.70	0.651315789473684	14	1-1,1441-1441;3-5,1439-1437;6-15,1434-1425;16-21,1418-1413	2-2,1440-1440[SIL];x-x,1436-1435[BULt];x-x,1424-1419[BULt]	((((((......((((((((((..(((.(&).)))--))))))))))------))))))	GGGCGGGCAGGAGCACGUGAGCGUGAUGG&CGAUC--GCUCGCGUGU------CCGCCU	2	0.997083128970816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN186_c0_g1_1430_TPlot.pdf
TRINITY_DN186_c0_g1:1494	si_a679	TRINITY_DN186_c0_g1	1483	1504	1494	-35.40	-24.70	0.69774011299435	11	1-7,1504-1498;10-19,1494-1485	8-9,1497-1495[AILt];20-21,1484-1483[UP3]	..((((((((((...(((((((&)))))))-..))))))))))..	ACCGAGACUGCGGGAGAUGAGG&CCUUAUU-CACGCGGUUUCGAA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a679_TRINITY_DN186_c0_g1_1494_TPlot.pdf
TRINITY_DN186_c0_g1:1495	si_a678	TRINITY_DN186_c0_g1	1484	1505	1495	-36.30	-26.30	0.724517906336088	10	1-8,1505-1498;11-20,1494-1485	9-10,1497-1495[AILt];21-21,1484-1484[UP3]	.((((((((((...((((((((&))))))))-..)))))))))).	CCGAGACUGCGGGAGAUGAGGA&UCCUUAUU-CACGCGGUUUCGA	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN186_c0_g1_1495_TPlot.pdf
TRINITY_DN186_c0_g1:1496	si_a677	TRINITY_DN186_c0_g1	1485	1506	1496	-35.40	-26.40	0.745762711864407	9	1-9,1506-1498;12-21,1494-1485	10-11,1497-1495[AILt]	((((((((((...(((((((((&)))))))))-..))))))))))	CGAGACUGCGGGAGAUGAGGAA&UUCCUUAUU-CACGCGGUUUCG	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN186_c0_g1_1496_TPlot.pdf
TRINITY_DN186_c0_g1:1498	si_a676	TRINITY_DN186_c0_g1	1486	1507	1498	-34.00	-24.40	0.717647058823529	10	2-10,1506-1498;13-21,1494-1486	1-1,1507-1507[UP5];11-12,1497-1495[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	GAGACUGCGGGAGAUGAGGAAG&AUUCCUUAUU-CACGCGGUUUC	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN186_c0_g1_1498_TPlot.pdf
TRINITY_DN186_c0_g1:1499	si_a556	TRINITY_DN186_c0_g1	1489	1508	1499	-33.40	-22.50	0.673652694610778	7.5	1-15,1508-1494;17-18,1493-1492	16-16,x-x[BULq];19-21,1491-1489[UP3]	...((-(((((((((((((((&))))))))))))))).))...	ACUGC-GGGAGAUGAGGAAGU&AUUUCUUUAUCUCCCCGUGAA	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN186_c0_g1_1499_TPlot.pdf
TRINITY_DN186_c0_g1:1500	si_a555	TRINITY_DN186_c0_g1	1490	1509	1500	-33.70	-23.30	0.691394658753709	7	1-16,1509-1494;18-19,1493-1492	17-17,x-x[BULq];20-21,1491-1490[UP3]	..((-((((((((((((((((&)))))))))))))))).))..	CUGC-GGGAGAUGAGGAAGUG&UAUUUCUUUAUCUCCCCGUGA	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN186_c0_g1_1500_TPlot.pdf
TRINITY_DN186_c0_g1:1501	si_a554	TRINITY_DN186_c0_g1	1491	1510	1501	-34.40	-23.40	0.680232558139535	7.5	2-17,1509-1494;19-20,1493-1492	1-1,1510-1510[UP5];18-18,x-x[BULq];21-21,1491-1491[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	UGC-GGGAGAUGAGGAAGUGC&CUAUUUCUUUAUCUCCCCGUG	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN186_c0_g1_1501_TPlot.pdf
TRINITY_DN186_c0_g1:1502	si_a553	TRINITY_DN186_c0_g1	1490	1511	1502	-33.70	-23.20	0.688427299703264	9.5	3-18,1509-1494;19-20,1492-1491	1-2,1511-1510[UP5];x-x,1493-1493[BULt];21-21,1490-1490[UP3]	.((.((((((((((((((((..&..))))))))))))))))-)).	CUGCGGGAGAUGAGGAAGUGCG&UCUAUUUCUUUAUCUCCC-CGU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN186_c0_g1_1502_TPlot.pdf
TRINITY_DN186_c0_g1:1503	si_a552	TRINITY_DN186_c0_g1	1491	1512	1503	-33.10	-23.10	0.697885196374622	10.5	4-19,1509-1494;20-21,1492-1491	1-3,1512-1510[UP5];x-x,1493-1493[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	UGCGGGAGAUGAGGAAGUGCGG&AUCUAUUUCUUUAUCUCCC-CG	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN186_c0_g1_1503_TPlot.pdf
TRINITY_DN186_c0_g1:1504	si_a551	TRINITY_DN186_c0_g1	1493	1513	1504	-31.60	-23.10	0.731012658227848	11.5	5-20,1509-1494	1-4,1513-1510[UP5];21-21,1493-1493[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGGAGAUGAGGAAGUGCGGC&AAUCUAUUUCUUUAUCUCCCC	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN186_c0_g1_1504_TPlot.pdf
TRINITY_DN186_c0_g1:1505	si_a550	TRINITY_DN186_c0_g1	1494	1514	1505	-30.90	-23.10	0.747572815533981	12.5	6-21,1509-1494	1-5,1514-1510[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGAGAUGAGGAAGUGCGGCA&CAAUCUAUUUCUUUAUCUCCC	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN186_c0_g1_1505_TPlot.pdf
TRINITY_DN186_c0_g1:1506	si_a549	TRINITY_DN186_c0_g1	1495	1515	1506	-29.50	-19.70	0.667796610169492	14	7-21,1509-1495	1-6,1515-1510[UP5]	(((((((((((((((......&......)))))))))))))))	GGAGAUGAGGAAGUGCGGCAG&UCAAUCUAUUUCUUUAUCUCC	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN186_c0_g1_1506_TPlot.pdf
TRINITY_DN186_c0_g1:4910	si_a501	TRINITY_DN186_c0_g1	4899	4918	4910	-33.50	-22.70	0.677611940298507	5.5	1-6,4918-4913;8-20,4912-4900	7-7,x-x[BULq];21-21,4899-4899[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	CUUUGGGGGAGACG-AAAACG&CGUUUUUCGUCUUCCUUGGAA	4	0.999999963006205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN186_c0_g1_4910_TPlot.pdf
TRINITY_DN186_c0_g1:4912	si_a499	TRINITY_DN186_c0_g1	4898	4920	4912	-35.20	-23.00	0.653409090909091	7.5	2-8,4919-4913;10-19,4912-4903;20-21,4899-4898	1-1,4920-4920[UP5];9-9,x-x[BULq];x-x,4902-4900[BULt]	((...((((((((((-(((((((.&.))))))).))))))))))---))	CCUUUGGGGGAGACG-AAAACGAA&GUCGUUUUUCGUCUUCCUU---GG	3	0.999999999999777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN186_c0_g1_4912_TPlot.pdf
TRINITY_DN186_c0_g1:4914	si_a496	TRINITY_DN186_c0_g1	4904	4923	4914	-32.40	-22.00	0.679012345679012	10	5-11,4919-4913;13-21,4912-4904	1-4,4923-4920[UP5];12-12,x-x[BULq]	(((((((((-(((((((....&....))))))).)))))))))	GGGGAGACG-AAAACGAACUC&UAUGUCGUUUUUCGUCUUCCU	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN186_c0_g1_4914_TPlot.pdf
TRINITY_DN1870_c0_g1:1610	si_a301	TRINITY_DN1870_c0_g1	1599	1619	1610	-27.80	-18.10	0.651079136690648	8	2-5,1618-1615;7-17,1613-1603	1-1,1619-1619[UP5];6-6,1614-1614[SIL];18-21,1602-1599[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	UAUACCAAGUGAAUCAUUUUA&AAAAAAGAUUCGCUUGGAUUU	4	0.999999836469413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN1870_c0_g1_1610_TPlot.pdf
TRINITY_DN18714_c0_g1:207	si_s776	TRINITY_DN18714_c0_g1	195	216	207	-25.10	-19.00	0.756972111553785	7	4-12,213-205;13-21,203-195	1-3,216-214[UP5];x-x,204-204[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	UUGUUUUAUGAGCAAUAGUCAC&AUUACUAUUGCU-AUAAAACAA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN18714_c0_g1_207_TPlot.pdf
TRINITY_DN18714_c0_g1:208	si_s775	TRINITY_DN18714_c0_g1	196	217	208	-25.00	-18.20	0.728	8	5-13,213-205;14-21,203-196	1-4,217-214[UP5];x-x,204-204[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	UGUUUUAUGAGCAAUAGUCACA&AAUUACUAUUGCU-AUAAAACA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN18714_c0_g1_208_TPlot.pdf
TRINITY_DN18721_c0_g1:1342	si_a429	TRINITY_DN18721_c0_g1	1331	1351	1342	-32.00	-20.90	0.653125	13	5-17,1347-1335	1-4,1351-1348[UP5];18-21,1334-1331[UP3]	....(((((((((((((....&....)))))))))))))....	GUCACCAACGGAUCUUGGAGU&AAUAUAGGAUCCGUUGGAUAU	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN18721_c0_g1_1342_TPlot.pdf
TRINITY_DN18721_c0_g1:1343	si_a428	TRINITY_DN18721_c0_g1	1332	1352	1343	-31.80	-20.90	0.657232704402516	14	6-18,1347-1335	1-5,1352-1348[UP5];19-21,1334-1332[UP3]	...(((((((((((((.....&.....)))))))))))))...	UCACCAACGGAUCUUGGAGUG&AAAUAUAGGAUCCGUUGGAUA	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN18721_c0_g1_1343_TPlot.pdf
TRINITY_DN18721_c0_g1:1344	si_a427	TRINITY_DN18721_c0_g1	1333	1353	1344	-31.80	-20.90	0.657232704402516	15	7-19,1347-1335	1-6,1353-1348[UP5];20-21,1334-1333[UP3]	..(((((((((((((......&......)))))))))))))..	CACCAACGGAUCUUGGAGUGG&UAAAUAUAGGAUCCGUUGGAU	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN18721_c0_g1_1344_TPlot.pdf
TRINITY_DN18721_c0_g1:1345	si_a426	TRINITY_DN18721_c0_g1	1334	1354	1345	-31.80	-20.90	0.657232704402516	16	8-20,1347-1335	1-7,1354-1348[UP5];21-21,1334-1334[UP3]	.(((((((((((((.......&.......))))))))))))).	ACCAACGGAUCUUGGAGUGGG&AUAAAUAUAGGAUCCGUUGGA	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN18721_c0_g1_1345_TPlot.pdf
TRINITY_DN18721_c0_g1:1346	si_a425	TRINITY_DN18721_c0_g1	1335	1355	1346	-30.80	-20.90	0.678571428571428	17	9-21,1347-1335	1-8,1355-1348[UP5]	(((((((((((((........&........)))))))))))))	CCAACGGAUCUUGGAGUGGGC&AAUAAAUAUAGGAUCCGUUGG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN18721_c0_g1_1346_TPlot.pdf
TRINITY_DN18721_c0_g1:1369	si_s430	TRINITY_DN18721_c0_g1	1358	1378	1369	-21.30	-13.88	0.651643192488263	9.5	1-8,1378-1371;12-20,1367-1359	9-11,1370-1368[SIL];21-21,1358-1358[UP3]	.(((((((((...((((((((&))))))))...))))))))).	AAGUAUGUGACGUUUGUUGUG&UAUAACAAUAAUUACAUAUUA	4	0.999067011191199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN18721_c0_g1_1369_TPlot.pdf
TRINITY_DN18721_c0_g1:1412	si_a492	TRINITY_DN18721_c0_g1	1401	1420	1412	-30.20	-19.90	0.658940397350993	7.5	2-4,1419-1417;6-13,1416-1409;16-20,1406-1402	1-1,1420-1420[UP5];5-5,x-x[BULq];14-15,1408-1407[SIL];21-21,1401-1401[UP3]	.(((((..((((((((-(((.&.))).))))))))..))))).	UGACGAUCGACGACGU-UUCG&AGAAUAUGUCGUUUUUCGUCU	4	0.999874024885933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN18721_c0_g1_1412_TPlot.pdf
TRINITY_DN18721_c0_g1:1436	si_a532	TRINITY_DN18721_c0_g1	1424	1445	1436	-40.10	-26.20	0.653366583541147	6.5	1-11,1445-1435;13-14,1433-1432;16-20,1429-1425	12-12,1434-1434[SIL];15-15,1431-1430[AILt];21-21,1424-1424[UP3]	.(((((..((.(((((((((((&))))))))))).))-.))))).	CUGGACGGGAACGUUCGCGUGU&ACACGCGAGCGAUC-GGUUCAA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN18721_c0_g1_1436_TPlot.pdf
TRINITY_DN18721_c0_g1:1696	si_s894	TRINITY_DN18721_c0_g1	1685	1705	1696	-29.10	-19.70	0.676975945017182	11	4-16,1702-1690	1-3,1705-1703[UP5];17-21,1689-1685[UP3]	.....(((((((((((((...&...))))))))))))).....	AGAAAGAAGAGAAAGUCUUUC&AAUAGGCUUUCUCUUCAAUUU	3	0.999996667958706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN18721_c0_g1_1696_TPlot.pdf
TRINITY_DN18721_c0_g1:1699	si_s891	TRINITY_DN18721_c0_g1	1688	1708	1699	-29.60	-19.70	0.66554054054054	14	7-19,1702-1690	1-6,1708-1703[UP5];20-21,1689-1688[UP3]	..(((((((((((((......&......)))))))))))))..	AAGAAGAGAAAGUCUUUCGGA&AUAAAUAGGCUUUCUCUUCAA	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN18721_c0_g1_1699_TPlot.pdf
TRINITY_DN18721_c0_g1:1700	si_s890	TRINITY_DN18721_c0_g1	1689	1709	1700	-29.50	-19.70	0.667796610169492	15	8-20,1702-1690	1-7,1709-1703[UP5];21-21,1689-1689[UP3]	.(((((((((((((.......&.......))))))))))))).	AGAAGAGAAAGUCUUUCGGAA&AAUAAAUAGGCUUUCUCUUCA	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN18721_c0_g1_1700_TPlot.pdf
TRINITY_DN18721_c0_g1:1701	si_s889	TRINITY_DN18721_c0_g1	1690	1710	1701	-28.80	-19.20	0.666666666666667	16	9-21,1702-1690	1-8,1710-1703[UP5]	(((((((((((((........&........)))))))))))))	GAAGAGAAAGUCUUUCGGAAG&AAAUAAAUAGGCUUUCUCUUC	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN18721_c0_g1_1701_TPlot.pdf
TRINITY_DN18721_c0_g1:1756	si_s630	TRINITY_DN18721_c0_g1	1743	1765	1756	-35.60	-25.90	0.72752808988764	7	1-11,1765-1755;12-20,1752-1744	x-x,1754-1753[BULt];21-21,1743-1743[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	ACAGACGCUUAAACGGAAAGAUC&GAUCUUUUCGU--AGGCGUUUGC	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN18721_c0_g1_1756_TPlot.pdf
TRINITY_DN18721_c0_g1:980	si_a665	TRINITY_DN18721_c0_g1	968	989	980	-29.60	-19.80	0.668918918918919	11.5	4-7,986-983;9-11,981-979;12-21,977-968	1-3,989-987[UP5];8-8,982-982[SIL];x-x,978-978[BULt]	((((((((((.(((.((((...&...)))).)))-))))))))))	GAUGAGGAGUACAGGAGGCUGC&AAUGCCUAUUG-AUUCCUUAUU	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN18721_c0_g1_980_TPlot.pdf
TRINITY_DN18724_c0_g1:1365	si_a791	TRINITY_DN18724_c0_g1	1348	1374	1365	-26.50	-17.30	0.652830188679245	22	5-11,1370-1364;12-21,1357-1348	1-4,1374-1371[UP5];x-x,1363-1358[BULt]	((((((((((......(((((((....&....)))))))------))))))))))	GGAUUGGAAACCAAUGGUGGGAAUCCU&UAUUUUUCUAU------UUUCCAAUCC	4	0.999999982764298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN18724_c0_g1_1365_TPlot.pdf
TRINITY_DN18724_c0_g1:1511	si_s48	TRINITY_DN18724_c0_g1	1501	1518	1511	-28.80	-18.80	0.652777777777778	9	1-8,1518-1511;12-21,1510-1501	9-11,x-x[BULq]	((((((((((---((((((((&))))))))...))))))))))	GCUAACUUGA---UCGAUUGU&AUAAUUGGAUUUCAAGUUAGC	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN18724_c0_g1_1511_TPlot.pdf
TRINITY_DN18728_c0_g2:41	si_a425	TRINITY_DN18728_c0_g2	30	49	41	-30.80	-20.60	0.668831168831169	4.5	1-8,49-42;10-12,41-39;14-21,37-30	9-9,x-x[BULq];13-13,38-38[SIL]	((((((((.(((-((((((((&)))))))).))).))))))))	CCAAUGGAACCU-UAUUUGUU&AAUAAAUAUAGGAUCCGUUGG	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN18728_c0_g2_41_TPlot.pdf
TRINITY_DN18728_c1_g1:408	si_a415	TRINITY_DN18728_c1_g1	397	418	408	-18.10	-12.10	0.668508287292818	5.5	1-6,418-413;7-9,411-409;11-21,407-397	x-x,412-412[BULt];10-10,408-408[SIL]	(((((((((((.(((.((((((&))))))-))).)))))))))))	CUGUAUUUAUUAAAAUUAUAGA&UUUAUA-UUUAAAUAAAUAUAG	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN18728_c1_g1_408_TPlot.pdf
TRINITY_DN1872_c0_g1:715	si_s88	TRINITY_DN1872_c0_g1	703	725	715	-34.80	-25.00	0.718390804597701	7	1-6,725-720;7-7,718-718;9-16,716-709;17-21,707-703	x-x,719-719[BULt];8-8,717-717[SIL];x-x,708-708[BULt]	(((((.((((((((.(.((((((&))))))-).))))))))-)))))	GAAGCAGAAGAGGAUGAAGAGGA&UCCUUU-CUUCUUCUUC-GCUUC	4	0.999989419620488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1872_c0_g1_715_TPlot.pdf
TRINITY_DN1872_c0_g1:716	si_s87	TRINITY_DN1872_c0_g1	704	726	716	-32.90	-22.50	0.683890577507599	7	1-7,726-720;8-8,718-718;10-17,716-709;18-21,707-704	x-x,719-719[BULt];9-9,717-717[SIL];x-x,708-708[BULt]	((((.((((((((.(.(((((((&)))))))-).))))))))-))))	AAGCAGAAGAGGAUGAAGAGGAA&UUCCUUU-CUUCUUCUUC-GCUU	2	0.999999999601715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1872_c0_g1_716_TPlot.pdf
TRINITY_DN18733_c0_g1:142	si_s39	TRINITY_DN18733_c0_g1	131	151	142	-22.30	-14.60	0.654708520179372	6.5	3-15,149-137;17-20,135-132	1-2,151-150[UP5];16-16,136-136[SIL];21-21,131-131[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	UAGUCAAAUUAUUGAAGAUAU&AAAUCUUUAAUAAUUGGAUUU	4	0.999999786133772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN18733_c0_g1_142_TPlot.pdf
TRINITY_DN1873_c0_g1:2311	si_a784	TRINITY_DN1873_c0_g1	2299	2320	2311	-24.70	-18.50	0.748987854251012	7	1-10,2320-2311;11-17,2309-2303	x-x,2310-2310[BULt];18-21,2302-2299[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AUUUUGGAGAAUAUAGAAGAGU&ACUCUUCUAU-UUUUCUAUUUU	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1873_c0_g1_2311_TPlot.pdf
TRINITY_DN1874_c0_g1:1783	si_s67	TRINITY_DN1874_c0_g1	1772	1791	1783	-25.60	-18.80	0.734375	4.5	2-9,1790-1783;11-21,1782-1772	1-1,1791-1791[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	GAGAAGGAAAA-AGAAGUUGA&GCAACUUCUAUUUUUUUUCUU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN1874_c0_g1_1783_TPlot.pdf
TRINITY_DN1875_c0_g1:1325	si_s692	TRINITY_DN1875_c0_g1	1312	1334	1325	-24.20	-17.40	0.71900826446281	6.5	2-13,1333-1322;14-21,1319-1312	1-1,1334-1334[UP5];x-x,1321-1320[BULt]	((((((((..((((((((((((.&.))))))))))))--))))))))	AAUAGAUCUUGAUUAGUUAGACG&AGUUUAAUUAGUC--GAUUUAUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN1875_c0_g1_1325_TPlot.pdf
TRINITY_DN1875_c0_g1:468	si_s202	TRINITY_DN1875_c0_g1	457	476	468	-33.60	-24.60	0.732142857142857	5.5	2-5,475-472;7-14,471-464;16-20,462-458	1-1,476-476[UP5];6-6,x-x[BULq];15-15,463-463[SIL];21-21,457-457[UP3]	.(((((.((((((((-((((.&.)))).)))))))).))))).	UGCACAUCUGGUACA-UCCAC&UUGGAAUGUACCAGUUGUGUU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN1875_c0_g1_468_TPlot.pdf
TRINITY_DN1875_c0_g1:469	si_s201	TRINITY_DN1875_c0_g1	458	477	469	-33.60	-24.60	0.732142857142857	6.5	3-6,475-472;8-15,471-464;17-21,462-458	1-2,477-476[UP5];7-7,x-x[BULq];16-16,463-463[SIL]	(((((.((((((((-((((..&..)))).)))))))).)))))	GCACAUCUGGUACA-UCCACA&UUUGGAAUGUACCAGUUGUGU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN1875_c0_g1_469_TPlot.pdf
TRINITY_DN1875_c0_g1:470	si_s200	TRINITY_DN1875_c0_g1	459	478	470	-32.80	-23.20	0.707317073170732	8	4-7,475-472;9-16,471-464;18-21,462-459	1-3,478-476[UP5];8-8,x-x[BULq];17-17,463-463[SIL]	((((.((((((((-((((...&...)))).)))))))).))))	CACAUCUGGUACA-UCCACAA&UUUUGGAAUGUACCAGUUGUG	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN1875_c0_g1_470_TPlot.pdf
TRINITY_DN1875_c0_g1:471	si_s199	TRINITY_DN1875_c0_g1	460	481	471	-31.20	-20.50	0.657051282051282	6	1-6,481-476;7-7,474-474;9-17,472-464;19-21,462-460	x-x,475-475[BULt];8-8,473-473[SIL];18-18,463-463[SIL]	(((.(((((((((.(.((((((&))))))-).))))))))).)))	ACAUCUGGUACAUCCACAAGAU&AUUUUG-GAAUGUACCAGUUGU	2	0.994565220670309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN1875_c0_g1_471_TPlot.pdf
TRINITY_DN1875_c0_g1:683	si_a109	TRINITY_DN1875_c0_g1	672	692	683	-28.50	-19.60	0.687719298245614	5	2-12,691-681;14-16,679-677;18-21,675-672	1-1,692-692[UP5];13-13,680-680[SIL];17-17,676-676[SIL]	((((.(((.(((((((((((.&.))))))))))).))).))))	AAGCUGGCACGUGUUUUAUCA&AGAUAAAAUACGAGCUUGUUU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN1875_c0_g1_683_TPlot.pdf
TRINITY_DN1875_c0_g1:684	si_a108	TRINITY_DN1875_c0_g1	673	693	684	-28.50	-18.70	0.656140350877193	7	3-13,691-681;15-17,679-677;19-21,675-673	1-2,693-692[UP5];14-14,680-680[SIL];18-18,676-676[SIL]	(((.(((.(((((((((((..&..))))))))))).))).)))	AGCUGGCACGUGUUUUAUCAA&AAGAUAAAAUACGAGCUUGUU	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN1875_c0_g1_684_TPlot.pdf
TRINITY_DN1875_c0_g1:722	si_s2	TRINITY_DN1875_c0_g1	711	731	722	-20.50	-13.90	0.678048780487805	10.5	2-16,730-716	1-1,731-731[UP5];17-21,715-711[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCACAGAUAAGUGGUAUGGAG&UUUUAUAUUACUUAUUAUUAC	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN1875_c0_g1_722_TPlot.pdf
TRINITY_DN18773_c0_g1:406	si_s86	TRINITY_DN18773_c0_g1	390	418	406	-32.90	-22.40	0.680851063829787	13.5	1-7,418-412;8-16,408-400;17-20,394-391	x-x,411-409[BULt];x-x,399-395[BULt];21-21,390-390[UP3]	.((((.....(((((((((...(((((((&)))))))---)))))))))-----)))).	UGCGACGAGUGGAAGAAGAAAUGAGGAAA&UUUCCUU---UCUUCUUCU-----UCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN18773_c0_g1_406_TPlot.pdf
TRINITY_DN18773_c0_g1:425	si_s71	TRINITY_DN18773_c0_g1	413	434	425	-25.70	-19.30	0.750972762645914	3.5	1-13,434-422;15-15,420-420;16-21,418-413	14-14,421-421[SIL];x-x,419-419[BULt]	((((((.(.(((((((((((((&))))))))))))).)-))))))	AGGAAACGCGAAAAAAUGGAAG&CUUCUAUUUUUUUUC-UUUCCU	0	0.256715306210678	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN18773_c0_g1_425_TPlot.pdf
TRINITY_DN18773_c0_g1:426	si_s70	TRINITY_DN18773_c0_g1	414	435	426	-25.80	-18.00	0.697674418604651	4.5	2-14,434-422;16-16,420-420;17-21,418-414	1-1,435-435[UP5];15-15,421-421[SIL];x-x,419-419[BULt]	(((((.(.(((((((((((((.&.))))))))))))).)-)))))	GGAAACGCGAAAAAAUGGAAGA&ACUUCUAUUUUUUUUC-UUUCC	3	0.999999999999499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN18773_c0_g1_426_TPlot.pdf
TRINITY_DN18773_c0_g1:437	si_s85	TRINITY_DN18773_c0_g1	420	446	437	-33.80	-22.20	0.656804733727811	10.5	2-6,445-441;8-17,439-430;18-21,423-420	1-1,446-446[UP5];7-7,440-440[SIL];x-x,429-424[BULt]	((((......((((((((((.(((((.&.))))).))))))))))------))))	GCGAAAAAAUGGAAGAAGAACGGAAGC&CUUUCCUUUCUUCUUCU------UCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN18773_c0_g1_437_TPlot.pdf
TRINITY_DN18773_c0_g1:440	si_s82	TRINITY_DN18773_c0_g1	429	453	440	-28.90	-19.60	0.678200692041523	12.5	1-6,453-448;7-9,443-441;11-20,439-430	x-x,447-444[BULt];10-10,440-440[SIL];21-21,429-429[UP3]	.((((((((((.(((....((((((&))))))----))).)))))))))).	UGGAAGAAGAACGGAAGCAAAGAGA&UUUCUU----UCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN18773_c0_g1_440_TPlot.pdf
TRINITY_DN18773_c0_g1:442	si_s80	TRINITY_DN18773_c0_g1	431	455	442	-28.20	-19.80	0.702127659574468	11.5	1-8,455-448;9-11,443-441;13-21,439-431	x-x,447-444[BULt];12-12,440-440[SIL]	(((((((((.(((....((((((((&))))))))----))).)))))))))	GAAGAAGAACGGAAGCAAAGAGAAG&UUUUUCUU----UCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN18773_c0_g1_442_TPlot.pdf
TRINITY_DN18777_c0_g1:241	si_s76	TRINITY_DN18777_c0_g1	229	250	241	-23.60	-15.50	0.656779661016949	10	3-7,248-244;9-15,242-236;16-21,234-229	1-2,250-249[UP5];8-8,243-243[SIL];x-x,235-235[BULt]	((((((.(((((((.(((((..&..))))).)))))))-))))))	GAGAGAUGGAGAGGUAAAGAUA&AUUUUUUUUCUUUCC-UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18777_c0_g1_241_TPlot.pdf
TRINITY_DN18777_c0_g1:247	si_a551	TRINITY_DN18777_c0_g1	236	256	247	-31.60	-21.40	0.677215189873418	5.5	2-7,255-250;9-18,248-239;20-21,237-236	1-1,256-256[UP5];8-8,249-249[SIL];19-19,238-238[SIL]	((.((((((((((.((((((.&.)))))).)))))))))).))	GGAGAGGUAAAGAUAUGGAUA&AAUCUAUUUCUUUAUCUCCCC	2	0.981132633276911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN18777_c0_g1_247_TPlot.pdf
TRINITY_DN1877_c0_g1:1158	si_s316	TRINITY_DN1877_c0_g1	1147	1167	1158	-31.50	-21.30	0.676190476190476	9	2-16,1166-1152	1-1,1167-1167[UP5];17-21,1151-1147[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAAAGAUAGGAAGGAUAGAG&UUCUGUCCUUCUUGUUACAAA	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1877_c0_g1_1158_TPlot.pdf
TRINITY_DN1877_c0_g1:1159	si_s315	TRINITY_DN1877_c0_g1	1148	1168	1159	-31.60	-21.30	0.674050632911392	9.5	3-17,1166-1152	1-2,1168-1167[UP5];18-21,1151-1148[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAAAGAUAGGAAGGAUAGAGA&AUUCUGUCCUUCUUGUUACAA	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN1877_c0_g1_1159_TPlot.pdf
TRINITY_DN1877_c0_g1:1160	si_s314	TRINITY_DN1877_c0_g1	1149	1169	1160	-31.50	-21.30	0.676190476190476	10.5	4-18,1166-1152	1-3,1169-1167[UP5];19-21,1151-1149[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAGAUAGGAAGGAUAGAGAU&AAUUCUGUCCUUCUUGUUACA	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN1877_c0_g1_1160_TPlot.pdf
TRINITY_DN1877_c0_g1:1161	si_s313	TRINITY_DN1877_c0_g1	1150	1170	1161	-30.80	-21.30	0.691558441558442	11.5	5-19,1166-1152	1-4,1170-1167[UP5];20-21,1151-1150[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAGAUAGGAAGGAUAGAGAUA&AAAUUCUGUCCUUCUUGUUAC	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN1877_c0_g1_1161_TPlot.pdf
TRINITY_DN1877_c0_g1:1162	si_s312	TRINITY_DN1877_c0_g1	1151	1171	1162	-29.00	-21.30	0.73448275862069	12.5	6-20,1166-1152	1-5,1171-1167[UP5];21-21,1151-1151[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAUAGGAAGGAUAGAGAUAA&AAAAUUCUGUCCUUCUUGUUA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1877_c0_g1_1162_TPlot.pdf
TRINITY_DN1877_c0_g1:1166	si_s75	TRINITY_DN1877_c0_g1	1155	1176	1166	-24.00	-17.50	0.729166666666667	6.5	1-7,1176-1170;8-12,1168-1164;14-21,1162-1155	x-x,1169-1169[BULt];13-13,1163-1163[SIL]	((((((((.(((((.(((((((&)))))))-))))).))))))))	AGGAAGGAUAGAGAUAAGGAUA&UAUUUUU-UUUCUUUCCUUUCU	2	0.999999999507865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1877_c0_g1_1166_TPlot.pdf
TRINITY_DN1877_c0_g1:1167	si_s74	TRINITY_DN1877_c0_g1	1156	1177	1167	-25.00	-19.30	0.772	6.5	1-8,1177-1170;9-13,1168-1164;15-21,1162-1156	x-x,1169-1169[BULt];14-14,1163-1163[SIL]	(((((((.(((((.((((((((&))))))))-))))).)))))))	GGAAGGAUAGAGAUAAGGAUAG&CUAUUUUU-UUUCUUUCCUUUC	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1877_c0_g1_1167_TPlot.pdf
TRINITY_DN1877_c0_g1:1168	si_s73	TRINITY_DN1877_c0_g1	1157	1178	1168	-24.00	-18.60	0.775	6.5	1-9,1178-1170;10-14,1168-1164;16-21,1162-1157	x-x,1169-1169[BULt];15-15,1163-1163[SIL]	((((((.(((((.(((((((((&)))))))))-))))).))))))	GAAGGAUAGAGAUAAGGAUAGA&UCUAUUUUU-UUUCUUUCCUUU	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1877_c0_g1_1168_TPlot.pdf
TRINITY_DN1877_c0_g1:1170	si_s72	TRINITY_DN1877_c0_g1	1158	1179	1170	-24.10	-17.50	0.726141078838174	7	2-10,1178-1170;11-15,1168-1164;17-21,1162-1158	1-1,1179-1179[UP5];x-x,1169-1169[BULt];16-16,1163-1163[SIL]	(((((.(((((.(((((((((.&.)))))))))-))))).)))))	AAGGAUAGAGAUAAGGAUAGAG&UUCUAUUUUU-UUUCUUUCCUU	4	0.999999999999344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1877_c0_g1_1170_TPlot.pdf
TRINITY_DN1877_c0_g1:1171	si_s71	TRINITY_DN1877_c0_g1	1159	1180	1171	-25.70	-17.20	0.669260700389105	7.5	2-11,1179-1170;12-16,1168-1164;18-21,1162-1159	1-1,1180-1180[UP5];x-x,1169-1169[BULt];17-17,1163-1163[SIL]	((((.(((((.((((((((((.&.))))))))))-))))).))))	AGGAUAGAGAUAAGGAUAGAGA&CUUCUAUUUUU-UUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1877_c0_g1_1171_TPlot.pdf
TRINITY_DN1877_c0_g1:1219	si_s82	TRINITY_DN1877_c0_g1	1207	1228	1219	-28.90	-19.20	0.664359861591695	6	1-11,1228-1218;12-15,1216-1213;18-21,1210-1207	x-x,1217-1217[BULt];16-17,1212-1211[SIL]	((((..((((.(((((((((((&)))))))))))-))))..))))	GGGAUAAAGAUAAGGAAAGAGA&UUUCUUUCCUU-UCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1877_c0_g1_1219_TPlot.pdf
TRINITY_DN1877_c0_g1:1227	si_s74	TRINITY_DN1877_c0_g1	1215	1237	1227	-25.00	-16.30	0.652	6	1-4,1237-1234;5-7,1232-1230;9-19,1228-1218;20-21,1216-1215	x-x,1233-1233[BULt];8-8,1229-1229[SIL];x-x,1217-1217[BULt]	((.(((((((((((.(((.((((&))))-))).)))))))))))-))	GAUAAGGAAAGAGAUAAAUAUAG&CUAU-UUUUUUUCUUUCCUU-UC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1877_c0_g1_1227_TPlot.pdf
TRINITY_DN1877_c0_g1:1230	si_s71	TRINITY_DN1877_c0_g1	1219	1240	1230	-25.70	-17.80	0.692607003891051	5.5	2-7,1239-1234;8-10,1232-1230;12-21,1228-1219	1-1,1240-1240[UP5];x-x,1233-1233[BULt];11-11,1229-1229[SIL]	((((((((((.(((.((((((.&.))))))-))).))))))))))	AGGAAAGAGAUAAAUAUAGAAA&CUUCUAU-UUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1877_c0_g1_1230_TPlot.pdf
TRINITY_DN1877_c0_g1:1458	si_s76	TRINITY_DN1877_c0_g1	1445	1467	1458	-23.60	-17.08	0.723728813559322	11	2-10,1466-1458;13-21,1453-1445	1-1,1467-1467[UP5];11-12,1457-1454[AILt]	(((((((((....(((((((((.&.)))))))))--..)))))))))	AAGAAAGGAUAGUGAAGAAAGAC&AUUUUUUUUC--UUUCCUUUCUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1877_c0_g1_1458_TPlot.pdf
TRINITY_DN1877_c0_g1:1519	si_a792	TRINITY_DN1877_c0_g1	1508	1527	1519	-27.60	-18.50	0.670289855072464	11	4-8,1524-1520;10-20,1519-1509	1-3,1527-1525[UP5];9-9,x-x[BULq];21-21,1508-1508[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	AGGAUUGGAAGA-AGAGGCAA&AUUUUUCUAUUUUCCAAUCCG	2	0.998853114148591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN1877_c0_g1_1519_TPlot.pdf
TRINITY_DN1877_c0_g1:1520	si_a791	TRINITY_DN1877_c0_g1	1509	1528	1520	-26.50	-18.10	0.683018867924528	12	5-9,1524-1520;11-21,1519-1509	1-4,1528-1525[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	GGAUUGGAAGA-AGAGGCAAA&UAUUUUUCUAUUUUCCAAUCC	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN1877_c0_g1_1520_TPlot.pdf
TRINITY_DN1877_c0_g1:5386	si_a784	TRINITY_DN1877_c0_g1	5374	5395	5386	-24.70	-18.80	0.761133603238866	7	2-16,5394-5380;17-21,5378-5374	1-1,5395-5395[UP5];x-x,5379-5379[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GAGGUGGGGGAAAUAGGGGAGG&ACUCUUCUAUUUUUCU-AUUUU	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1877_c0_g1_5386_TPlot.pdf
TRINITY_DN1877_c0_g1:817	si_a352	TRINITY_DN1877_c0_g1	807	826	817	-22.50	-15.10	0.671111111111111	7	3-18,824-809;20-21,808-807	1-2,826-825[UP5];19-19,x-x[BULq]	((-((((((((((((((((..&..)))))))))))))))).))	GA-UAAAGUAGAGUUAGUAAA&AAUAUUAAUUCUAUUUUGAUC	4	0.999631482924068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN1877_c0_g1_817_TPlot.pdf
TRINITY_DN1877_c0_g1:818	si_a351	TRINITY_DN1877_c0_g1	807	827	818	-20.50	-14.10	0.68780487804878	10	4-19,824-809	1-3,827-825[UP5];20-21,808-807[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAUAAAGUAGAGUUAGUAAAG&AAAUAUUAAUUCUAUUUUGAU	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN1877_c0_g1_818_TPlot.pdf
TRINITY_DN1877_c0_g1:819	si_a350	TRINITY_DN1877_c0_g1	808	828	819	-20.30	-14.10	0.694581280788177	11	5-20,824-809	1-4,828-825[UP5];21-21,808-808[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUAAAGUAGAGUUAGUAAAGU&AAAAUAUUAAUUCUAUUUUGA	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1877_c0_g1_819_TPlot.pdf
TRINITY_DN1877_c0_g1:821	si_a348	TRINITY_DN1877_c0_g1	810	830	821	-21.10	-14.08	0.667298578199052	9	2-3,829-828;7-21,824-810	1-1,830-830[UP5];4-6,827-825[SIL]	(((((((((((((((...((.&.))...)))))))))))))))	AAAGUAGAGUUAGUAAAGUCU&CGAAAAUAUUAAUUCUAUUUU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN1877_c0_g1_821_TPlot.pdf
TRINITY_DN18783_c0_g1:758	si_a632	TRINITY_DN18783_c0_g1	747	767	758	-26.10	-20.60	0.789272030651341	8	4-11,764-757;13-21,755-747	1-3,767-765[UP5];12-12,756-756[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GCUCAAAGACAUCGACAUCGC&AUUAUGUCGAUUUUUUUGAGU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN18783_c0_g1_758_TPlot.pdf
TRINITY_DN18783_c0_g1:988	si_s383	TRINITY_DN18783_c0_g1	978	998	988	-40.90	-27.00	0.660146699266504	7	1-9,998-990;10-11,988-987;14-15,985-984;17-21,982-978	x-x,989-989[BULt];12-13,986-986[AILq];16-16,983-983[SIL]	(((((.((.-((.(((((((((&)))))))))-))..)).)))))	UGGAAAGUC-GGACGGACGCGC&GCGUGUCCG-CCUUACAUUCCA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s383_TRINITY_DN18783_c0_g1_988_TPlot.pdf
TRINITY_DN18784_c0_g1:2447	si_a125	TRINITY_DN18784_c0_g1	2436	2456	2447	-25.00	-19.30	0.772	5.5	1-8,2456-2449;11-21,2446-2436	9-10,2448-2447[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	AAUUACUGUUGGAAUGAAACA&UGUUUUAUAGCAAUAGUAAUU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN18784_c0_g1_2447_TPlot.pdf
TRINITY_DN18784_c0_g1:916	si_s73	TRINITY_DN18784_c0_g1	905	925	916	-24.00	-15.70	0.654166666666667	7	1-3,925-923;5-8,921-918;10-20,916-906	4-4,922-922[SIL];9-9,917-917[SIL];21-21,905-905[UP3]	.(((((((((((.((((.(((&))).)))).))))))))))).	UGGGGAGGGAAAUAAAACAGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN18784_c0_g1_916_TPlot.pdf
TRINITY_DN1878_c0_g1:1106	si_s892	TRINITY_DN1878_c0_g1	1092	1115	1106	-29.50	-19.70	0.667796610169492	17	4-10,1112-1106;11-19,1102-1094	1-3,1115-1113[UP5];x-x,1105-1103[BULt];20-21,1093-1092[UP3]	..(((((((((...(((((((...&...)))))))---)))))))))..	GCUGGAGGGAGAUUGGCCUGUGGC&UAAAUAGGCU---UUCUCUUCAAU	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN1878_c0_g1_1106_TPlot.pdf
TRINITY_DN1878_c0_g1:819	si_s238	TRINITY_DN1878_c0_g1	810	826	819	-33.40	-21.80	0.652694610778443	11	3-8,824-819;13-21,818-810	1-2,826-825[UP5];9-12,x-x[BULq]	(((((((((----((((((..&..))))))....)))))))))	GGAAAUGCC----GAUUCCCU&AAGGAAUCAAUAGGCAUUUCC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s238_TRINITY_DN1878_c0_g1_819_TPlot.pdf
TRINITY_DN18798_c0_g1:3001	si_a761	TRINITY_DN18798_c0_g1	2990	3010	3001	-30.10	-20.30	0.674418604651163	8.5	1-14,3010-2997	15-21,2996-2990[UP3]	.......((((((((((((((&)))))))))))))).......	CAACACCUAAAGACCCAAAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN18798_c0_g1_3001_TPlot.pdf
TRINITY_DN18798_c0_g1:3009	si_a753	TRINITY_DN18798_c0_g1	2998	3021	3009	-33.10	-23.80	0.719033232628399	9.5	2-2,3020-3020;4-7,3018-3015;8-21,3011-2998	1-1,3021-3021[UP5];3-3,3019-3019[SIL];x-x,3014-3012[BULt]	((((((((((((((...((((.(.&.).))))---))))))))))))))	AAAGACCCAAAGGAAGAGGUUGAA&AUGAACC---UCCUUUGGGUUUUU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN18798_c0_g1_3009_TPlot.pdf
TRINITY_DN18798_c0_g1:3016	si_a544	TRINITY_DN18798_c0_g1	3005	3025	3016	-28.90	-19.50	0.674740484429066	5.5	1-2,3025-3024;4-12,3022-3014;14-20,3012-3006	3-3,3023-3023[SIL];13-13,3013-3013[SIL];21-21,3005-3005[UP3]	.(((((((.(((((((((.((&)).))))))))).))))))).	CAAAGGAAGAGGUUGAACGGA&UCGGUUCAAUCUAUUUCUUUA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN18798_c0_g1_3016_TPlot.pdf
TRINITY_DN18798_c0_g1:5767	si_a600	TRINITY_DN18798_c0_g1	5756	5776	5767	-29.70	-20.48	0.68956228956229	9.5	1-3,5776-5774;7-18,5770-5759	4-6,5773-5771[SIL];19-21,5758-5756[UP3]	...((((((((((((...(((&)))...))))))))))))...	AGCGGGAUUGCGAAAUCACUG&CAGAAUUUUCGCAAUUCCAAU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN18798_c0_g1_5767_TPlot.pdf
TRINITY_DN1880_c0_g1:1008	si_a193	TRINITY_DN1880_c0_g1	997	1017	1008	-30.90	-20.10	0.650485436893204	10	2-15,1016-1003	1-1,1017-1017[UP5];16-21,1002-997[UP3]	......((((((((((((((.&.))))))))))))))......	CUAAUAAGUGGAUGGGGAAAA&CUUUCCCUGUUCACUAAUAAA	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN1880_c0_g1_1008_TPlot.pdf
TRINITY_DN18810_c1_g2:113	si_a788	TRINITY_DN18810_c1_g2	105	122	113	-24.80	-17.00	0.685483870967742	6	1-12,122-111;16-20,110-106	13-15,x-x[BULq];21-21,105-105[UP3]	.(((((---((((((((((((&))))))))))))...))))).	AUGGAA---GGAAAGAUAGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.999999998417255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN18810_c1_g2_113_TPlot.pdf
TRINITY_DN18810_c1_g2:116	si_s70	TRINITY_DN18810_c1_g2	107	124	116	-25.80	-18.80	0.728682170542636	8.5	2-9,123-116;13-21,115-107	1-1,124-124[UP5];10-12,x-x[BULq]	(((((((((---((((((((.&.))))))))...)))))))))	GGAAGGAAA---GAUAGAAGG&ACUUCUAUUUUUUUUCUUUCC	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN18810_c1_g2_116_TPlot.pdf
TRINITY_DN18810_c1_g2:117	si_s75	TRINITY_DN18810_c1_g2	106	127	117	-24.00	-17.50	0.729166666666667	9.5	3-9,125-119;10-20,117-107	1-2,127-126[UP5];x-x,118-118[BULt];21-21,106-106[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	UGGAAGGAAAGAUAGAAGGAAA&UAUUUUUUU-UCUUUCCUUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18810_c1_g2_117_TPlot.pdf
TRINITY_DN18816_c0_g1:1891	si_a632	TRINITY_DN18816_c0_g1	1880	1900	1891	-26.10	-18.50	0.708812260536398	10	5-19,1896-1882	1-4,1900-1897[UP5];20-21,1881-1880[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGUCAAAGGAAUCGACACGGA&AUUAUGUCGAUUUUUUUGAGU	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN18816_c0_g1_1891_TPlot.pdf
TRINITY_DN1881_c0_g1:2330	si_a406	TRINITY_DN1881_c0_g1	2319	2339	2330	-19.80	-13.60	0.686868686868687	10	3-14,2337-2326;16-20,2324-2320	1-2,2339-2338[UP5];15-15,2325-2325[SIL];21-21,2319-2319[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	GUUGAGCAUGAGCAGAACGGA&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999094385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1881_c0_g1_2330_TPlot.pdf
TRINITY_DN1881_c0_g1:2520	si_s47	TRINITY_DN1881_c0_g1	2509	2529	2520	-26.30	-18.10	0.688212927756654	13	6-14,2524-2516;17-21,2513-2509	1-5,2529-2525[UP5];15-16,2515-2514[SIL]	(((((..(((((((((.....&.....)))))))))..)))))	CUGGCGGGAAGUCCAAAUGGG&AAUAAUUGGAUUUCAAGUUAG	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN1881_c0_g1_2520_TPlot.pdf
TRINITY_DN1881_c0_g1:2872	si_s489	TRINITY_DN1881_c0_g1	2861	2881	2872	-17.90	-12.10	0.675977653631285	9	2-9,2880-2873;11-18,2871-2864	1-1,2881-2881[UP5];10-10,2872-2872[SIL];19-21,2863-2861[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	AUCGUUUAUGUGUGAAUGAAA&AUUUAUUUAAAUAUAAACAAA	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN1881_c0_g1_2872_TPlot.pdf
TRINITY_DN18828_c0_g2:2559	si_s191	TRINITY_DN18828_c0_g2	2548	2568	2559	-26.60	-18.20	0.684210526315789	9.5	5-12,2564-2557;14-21,2555-2548	1-4,2568-2565[UP5];13-13,2556-2556[SIL]	((((((((.((((((((....&....)))))))).))))))))	UGCAUUCCUAGAUAAUCUGCC&UAACGAUUAUUUUGGAAUGUA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN18828_c0_g2_2559_TPlot.pdf
TRINITY_DN18828_c0_g2:3317	si_a439	TRINITY_DN18828_c0_g2	3306	3330	3317	-32.40	-21.10	0.651234567901235	16	1-9,3330-3322;10-16,3317-3311	x-x,3321-3318[BULt];17-21,3310-3306[UP3]	.....(((((((....(((((((((&)))))))))----))))))).....	UAUUCAUCUCAUUUCUGUCCGGCGG&CCGUUGGAU----AUGAGAUAAUUG	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a439_TRINITY_DN18828_c0_g2_3317_TPlot.pdf
TRINITY_DN18828_c0_g2:3322	si_a438	TRINITY_DN18828_c0_g2	3307	3331	3322	-31.70	-22.50	0.709779179810726	15	1-10,3331-3322;11-17,3317-3311	x-x,3321-3318[BULt];18-21,3310-3307[UP3]	....(((((((....((((((((((&))))))))))----)))))))....	AUUCAUCUCAUUUCUGUCCGGCGGA&UCCGUUGGAU----AUGAGAUAAUU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN18828_c0_g2_3322_TPlot.pdf
TRINITY_DN18839_c0_g1:3034	si_a428	TRINITY_DN18839_c0_g1	3023	3043	3034	-31.80	-20.70	0.650943396226415	11	4-11,3040-3033;13-19,3031-3025	1-3,3043-3041[UP5];12-12,3032-3032[SIL];20-21,3024-3023[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	GCUCCAACGCAUCCUGUGCUG&AAAUAUAGGAUCCGUUGGAUA	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN18839_c0_g1_3034_TPlot.pdf
TRINITY_DN1883_c0_g1:1257	si_a72	TRINITY_DN1883_c0_g1	1244	1266	1257	-21.90	-15.00	0.684931506849315	4	1-11,1266-1256;12-16,1254-1250;17-21,1248-1244	x-x,1255-1255[BULt];x-x,1249-1249[BULt]	(((((.(((((.(((((((((((&)))))))))))-)))))-)))))	AUAAUAGAAAAUACAAUUUGGAA&UUUCAAAUUGU-UUUUC-AUUAU	2	0.999993199526285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1883_c0_g1_1257_TPlot.pdf
TRINITY_DN1883_c0_g1:1258	si_a71	TRINITY_DN1883_c0_g1	1245	1267	1258	-23.30	-16.50	0.708154506437768	4	1-12,1267-1256;13-17,1254-1250;18-21,1248-1245	x-x,1255-1255[BULt];x-x,1249-1249[BULt]	((((.(((((.((((((((((((&))))))))))))-)))))-))))	UAAUAGAAAAUACAAUUUGGAAG&CUUUCAAAUUGU-UUUUC-AUUA	3	0.999977200196488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1883_c0_g1_1258_TPlot.pdf
TRINITY_DN1883_c0_g1:1259	si_a70	TRINITY_DN1883_c0_g1	1247	1268	1259	-23.90	-16.30	0.682008368200837	6	2-13,1267-1256;14-18,1254-1250	1-1,1268-1268[UP5];x-x,1255-1255[BULt];19-21,1249-1247[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	AUAGAAAAUACAAUUUGGAAGU&UCUUUCAAAUUGU-UUUUCAUU	3	0.999999956221005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1883_c0_g1_1259_TPlot.pdf
TRINITY_DN1883_c0_g1:1260	si_a69	TRINITY_DN1883_c0_g1	1248	1269	1260	-24.00	-16.30	0.679166666666667	7	3-14,1267-1256;15-19,1254-1250	1-2,1269-1268[UP5];x-x,1255-1255[BULt];20-21,1249-1248[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	UAGAAAAUACAAUUUGGAAGUA&UUCUUUCAAAUUGU-UUUUCAU	2	0.999990601104866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1883_c0_g1_1260_TPlot.pdf
TRINITY_DN1883_c0_g1:949	si_a398	TRINITY_DN1883_c0_g1	938	965	949	-22.40	-15.30	0.683035714285714	18.5	1-8,965-958;9-20,950-939	x-x,957-951[BULt];21-21,938-938[UP3]	.((((((((((((.......((((((((&))))))))-------)))))))))))).	AAAACGAAACGAUUAAAAAAUCUGUGUU&AAUAUAGA-------AUUGUUUUGUUUA	3	0.999998764302083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1883_c0_g1_949_TPlot.pdf
TRINITY_DN1883_c0_g1:950	si_a397	TRINITY_DN1883_c0_g1	939	966	950	-24.00	-16.60	0.691666666666667	18	1-9,966-958;10-21,950-939	x-x,957-951[BULt]	((((((((((((.......(((((((((&)))))))))-------))))))))))))	AAACGAAACGAUUAAAAAAUCUGUGUUU&GAAUAUAGA-------AUUGUUUUGUUU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN1883_c0_g1_950_TPlot.pdf
TRINITY_DN18840_c0_g1:3911	si_a866	TRINITY_DN18840_c0_g1	3900	3922	3911	-23.30	-15.50	0.665236051502146	8.5	1-7,3922-3916;8-20,3913-3901	x-x,3915-3914[BULt];21-21,3900-3900[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	AAACUAAGUUUUUACAGUAGUUG&CAAUUAU--UAAAGAUUUAGUUG	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN18840_c0_g1_3911_TPlot.pdf
TRINITY_DN1884_c0_g1:2219	si_s82	TRINITY_DN1884_c0_g1	2204	2228	2219	-28.90	-20.40	0.705882352941176	15	3-12,2226-2217;13-20,2212-2205	1-2,2228-2227[UP5];x-x,2216-2213[BULt];21-21,2204-2204[UP3]	.((((((((....((((((((((..&..))))))))))----)))))))).	CGGAAGGAGUUCAGGAGGAAAGACA&UUUCUUUCCUUU----CUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1884_c0_g1_2219_TPlot.pdf
TRINITY_DN1884_c0_g1:2220	si_s81	TRINITY_DN1884_c0_g1	2205	2229	2220	-28.90	-20.40	0.705882352941176	11.5	4-13,2226-2217;14-21,2212-2205	1-3,2229-2227[UP5];x-x,2216-2213[BULt]	((((((((....((((((((((...&...))))))))))----))))))))	GGAAGGAGUUCAGGAGGAAAGACAC&UUUUCUUUCCUUU----CUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1884_c0_g1_2220_TPlot.pdf
TRINITY_DN18851_c0_g2:157	si_a584	TRINITY_DN18851_c0_g2	146	167	157	-31.50	-20.80	0.66031746031746	6	1-4,167-164;5-6,162-161;8-21,159-146	x-x,163-163[BULt];7-7,160-160[SIL]	((((((((((((((.((.((((&))))-)).))))))))))))))	UUCUGUUCUUCUUGCUAUCAGG&UUUG-UAACAAGAAGGACAGAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a584_TRINITY_DN18851_c0_g2_157_TPlot.pdf
TRINITY_DN18868_c0_g1:117	si_a759	TRINITY_DN18868_c0_g1	106	130	117	-32.60	-22.40	0.687116564417178	11.5	1-7,130-124;8-13,119-114;16-21,111-106	x-x,123-120[BULt];14-15,113-112[SIL]	((((((..((((((....(((((((&)))))))----))))))..))))))	UCAGUCCCAAGCCCGGAUAAAGGAG&CUCCUUU----GGGUUUUUGAUUGA	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN18868_c0_g1_117_TPlot.pdf
TRINITY_DN18869_c0_g1:2987	si_s831	TRINITY_DN18869_c0_g1	2976	2996	2987	-24.00	-17.50	0.729166666666667	6.5	2-2,2995-2995;4-19,2993-2978	1-1,2996-2996[UP5];3-3,2994-2994[SIL];20-21,2977-2976[UP3]	..((((((((((((((((.(.&.).))))))))))))))))..	GACUUUCAGGUUGUUUUUGAC&AUGAAAAACAAUUUGAAAGAA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s831_TRINITY_DN18869_c0_g1_2987_TPlot.pdf
TRINITY_DN18869_c0_g1:3488	si_s160	TRINITY_DN18869_c0_g1	3477	3497	3488	-40.60	-26.70	0.657635467980295	9	4-19,3494-3479	1-3,3497-3495[UP5];20-21,3478-3477[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUACUCUUGGCCAUGGAGGG&AGGUUCAUGGCCAGGGGUAAA	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN18869_c0_g1_3488_TPlot.pdf
TRINITY_DN18869_c0_g1:3489	si_s159	TRINITY_DN18869_c0_g1	3478	3501	3489	-42.60	-28.60	0.671361502347418	12	1-2,3501-3500;4-5,3498-3497;6-20,3493-3479	3-3,3499-3499[SIL];x-x,3496-3494[BULt];21-21,3478-3478[UP3]	.(((((((((((((((...((.((&)).))---))))))))))))))).	CUACUCUUGGCCAUGGAGGGCGUC&GAGGU---UCAUGGCCAGGGGUAA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN18869_c0_g1_3489_TPlot.pdf
TRINITY_DN18869_c0_g1:4045	si_s804	TRINITY_DN18869_c0_g1	4029	4054	4045	-27.90	-19.20	0.688172043010753	10.5	1-13,4054-4042;15-17,4040-4038;18-21,4032-4029	14-14,4041-4041[SIL];x-x,4037-4033[BULt]	((((.....(((.(((((((((((((&))))))))))))).)))-----))))	GAGACUUAUGGGCGACGAGGAUGAGA&UUUUAUCUUCGUUACCU-----UUUC	2	0.999799192897878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN18869_c0_g1_4045_TPlot.pdf
TRINITY_DN1886_c0_g1:1306	si_a395	TRINITY_DN1886_c0_g1	1295	1315	1306	-24.70	-16.60	0.672064777327935	5	1-11,1315-1305;13-19,1303-1297	12-12,1304-1304[SIL];20-21,1296-1295[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AAAGAAUAAAUCUAUAUUCUU&AAGAAUAUAGAAUUGUUUUGU	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN1886_c0_g1_1306_TPlot.pdf
TRINITY_DN1886_c0_g1:1307	si_a394	TRINITY_DN1886_c0_g1	1296	1316	1307	-24.30	-17.90	0.736625514403292	3	1-12,1316-1305;14-20,1303-1297	13-13,1304-1304[SIL];21-21,1296-1296[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AAGAAUAAAUCUAUAUUCUUA&UAAGAAUAUAGAAUUGUUUUG	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN1886_c0_g1_1307_TPlot.pdf
TRINITY_DN18873_c0_g1:19	si_a600	TRINITY_DN18873_c0_g1	8	27	19	-29.70	-19.60	0.65993265993266	8.5	1-3,27-25;6-19,23-10	4-5,24-24[AILq];20-21,9-8[UP3]	..((((((((((((((.-(((&)))..))))))))))))))..	CAUGGGAUUGUGGAAAA-CUG&CAGAAUUUUCGCAAUUCCAAU	1	0.0620540232184852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN18873_c0_g1_19_TPlot.pdf
TRINITY_DN18876_c0_g1:1702	si_s52	TRINITY_DN18876_c0_g1	1691	1711	1702	-31.30	-22.40	0.715654952076677	6.5	1-16,1711-1696	17-21,1695-1691[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAAAUCUGACUUGAAGUCCAA&UUGGAUUUCAAGUUAGCAACU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN18876_c0_g1_1702_TPlot.pdf
TRINITY_DN18876_c0_g1:1703	si_s51	TRINITY_DN18876_c0_g1	1692	1712	1703	-30.70	-22.40	0.729641693811075	6.5	2-17,1711-1696	1-1,1712-1712[UP5];18-21,1695-1692[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAUCUGACUUGAAGUCCAAG&AUUGGAUUUCAAGUUAGCAAC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN18876_c0_g1_1703_TPlot.pdf
TRINITY_DN18876_c0_g1:1704	si_s50	TRINITY_DN18876_c0_g1	1693	1713	1704	-29.00	-22.40	0.772413793103448	7.5	3-18,1711-1696	1-2,1713-1712[UP5];19-21,1695-1693[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAUCUGACUUGAAGUCCAAGA&AAUUGGAUUUCAAGUUAGCAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN18876_c0_g1_1704_TPlot.pdf
TRINITY_DN18876_c0_g1:1705	si_s49	TRINITY_DN18876_c0_g1	1694	1714	1705	-29.30	-22.40	0.764505119453925	8.5	4-19,1711-1696	1-3,1714-1712[UP5];20-21,1695-1694[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUCUGACUUGAAGUCCAAGAC&UAAUUGGAUUUCAAGUUAGCA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN18876_c0_g1_1705_TPlot.pdf
TRINITY_DN18876_c0_g1:1706	si_s48	TRINITY_DN18876_c0_g1	1695	1715	1706	-28.80	-22.40	0.777777777777778	9.5	5-20,1711-1696	1-4,1715-1712[UP5];21-21,1695-1695[UP3]	.((((((((((((((((....&....)))))))))))))))).	UCUGACUUGAAGUCCAAGACU&AUAAUUGGAUUUCAAGUUAGC	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN18876_c0_g1_1706_TPlot.pdf
TRINITY_DN18876_c0_g1:1708	si_s46	TRINITY_DN18876_c0_g1	1697	1717	1708	-25.00	-20.00	0.8	12.5	7-21,1711-1697	1-6,1717-1712[UP5]	(((((((((((((((......&......)))))))))))))))	UGACUUGAAGUCCAAGACUAA&UAAUAAUUGGAUUUCAAGUUA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN18876_c0_g1_1708_TPlot.pdf
TRINITY_DN18876_c0_g1:1722	si_a146	TRINITY_DN18876_c0_g1	1712	1731	1722	-29.70	-20.52	0.690909090909091	4.5	1-13,1731-1719;18-21,1715-1712	14-17,1718-1716[AILq]	((((...-(((((((((((((&)))))))))))))....))))	GACUAAU-AACAACAACGAUU&AAUCGUUGUUGUUUUAAGGUC	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN18876_c0_g1_1722_TPlot.pdf
TRINITY_DN18876_c0_g1:1723	si_a145	TRINITY_DN18876_c0_g1	1713	1732	1723	-28.10	-18.42	0.655516014234875	4.5	1-14,1732-1719;19-21,1715-1713	15-18,1718-1716[AILq]	(((...-((((((((((((((&))))))))))))))....)))	ACUAAU-AACAACAACGAUUA&UAAUCGUUGUUGUUUUAAGGU	4	0.99999848013799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN18876_c0_g1_1723_TPlot.pdf
TRINITY_DN18876_c0_g1:1726	si_a142	TRINITY_DN18876_c0_g1	1715	1735	1726	-23.50	-17.80	0.757446808510638	9	4-17,1732-1719	1-3,1735-1733[UP5];18-21,1718-1715[UP3]	....((((((((((((((...&...))))))))))))))....	UAAUAACAACAACGAUUAUAA&AAUUAAUCGUUGUUGUUUUAA	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN18876_c0_g1_1726_TPlot.pdf
TRINITY_DN18876_c0_g1:1727	si_a141	TRINITY_DN18876_c0_g1	1716	1736	1727	-23.80	-17.80	0.747899159663866	10	5-18,1732-1719	1-4,1736-1733[UP5];19-21,1718-1716[UP3]	...((((((((((((((....&....))))))))))))))...	AAUAACAACAACGAUUAUAAC&UAAUUAAUCGUUGUUGUUUUA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN18876_c0_g1_1727_TPlot.pdf
TRINITY_DN18876_c0_g1:1728	si_a140	TRINITY_DN18876_c0_g1	1717	1737	1728	-25.20	-17.80	0.706349206349206	11	6-19,1732-1719	1-5,1737-1733[UP5];20-21,1718-1717[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUAACAACAACGAUUAUAACC&GUAAUUAAUCGUUGUUGUUUU	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN18876_c0_g1_1728_TPlot.pdf
TRINITY_DN18876_c0_g1:1729	si_a139	TRINITY_DN18876_c0_g1	1718	1738	1729	-25.90	-17.80	0.687258687258687	12	7-20,1732-1719	1-6,1738-1733[UP5];21-21,1718-1718[UP3]	.((((((((((((((......&......)))))))))))))).	UAACAACAACGAUUAUAACCC&AGUAAUUAAUCGUUGUUGUUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN18876_c0_g1_1729_TPlot.pdf
TRINITY_DN18876_c0_g1:1730	si_a138	TRINITY_DN18876_c0_g1	1719	1739	1730	-26.30	-17.80	0.67680608365019	13	8-21,1732-1719	1-7,1739-1733[UP5]	((((((((((((((.......&.......))))))))))))))	AACAACAACGAUUAUAACCCA&UAGUAAUUAAUCGUUGUUGUU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN18876_c0_g1_1730_TPlot.pdf
TRINITY_DN18876_c0_g1:2539	si_s76	TRINITY_DN18876_c0_g1	2527	2548	2539	-23.60	-17.20	0.728813559322034	7	3-14,2546-2535;15-19,2533-2529	1-2,2548-2547[UP5];x-x,2534-2534[BULt];20-21,2528-2527[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	GCGAAAGUGAAGGAAAAAAAUU&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18876_c0_g1_2539_TPlot.pdf
TRINITY_DN18876_c0_g1:3126	si_a407	TRINITY_DN18876_c0_g1	3115	3135	3126	-19.80	-13.20	0.666666666666667	12	1-12,3135-3124;15-17,3121-3119	13-14,3123-3122[SIL];18-21,3118-3115[UP3]	....(((..((((((((((((&))))))))))))..)))....	UAAGGGAGUUGAGCAGAGCGA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN18876_c0_g1_3126_TPlot.pdf
TRINITY_DN18876_c0_g1:3127	si_a406	TRINITY_DN18876_c0_g1	3116	3136	3127	-19.80	-14.20	0.717171717171717	11	1-13,3136-3124;16-18,3121-3119	14-15,3123-3122[SIL];19-21,3118-3116[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	AAGGGAGUUGAGCAGAGCGAU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN18876_c0_g1_3127_TPlot.pdf
TRINITY_DN18876_c0_g1:3130	si_a403	TRINITY_DN18876_c0_g1	3119	3139	3130	-22.00	-15.40	0.7	10	3-16,3137-3124;19-21,3121-3119	1-2,3139-3138[UP5];17-18,3123-3122[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	GGAGUUGAGCAGAGCGAUUGG&AGAAUUGUUUUGUUUAUAUUU	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN18876_c0_g1_3130_TPlot.pdf
TRINITY_DN18876_c0_g1:3131	si_a402	TRINITY_DN18876_c0_g1	3120	3140	3131	-22.40	-14.90	0.665178571428572	11.5	4-17,3137-3124;20-21,3121-3120	1-3,3140-3138[UP5];18-19,3123-3122[SIL]	((..((((((((((((((...&...))))))))))))))..))	GAGUUGAGCAGAGCGAUUGGU&UAGAAUUGUUUUGUUUAUAUU	4	0.99999999996619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN18876_c0_g1_3131_TPlot.pdf
TRINITY_DN18876_c0_g1:3135	si_a398	TRINITY_DN18876_c0_g1	3124	3143	3135	-22.40	-14.70	0.65625	9	2-5,3142-3139;8-21,3137-3124	1-1,3143-3143[UP5];6-7,3138-3138[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	UGAGCAGAGCGAUUG-GUAUC&AAUAUAGAAUUGUUUUGUUUA	2	0.999999673677147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN18876_c0_g1_3135_TPlot.pdf
TRINITY_DN18876_c0_g1:3203	si_a549	TRINITY_DN18876_c0_g1	3192	3212	3203	-29.50	-19.50	0.661016949152542	7.5	4-19,3209-3194	1-3,3212-3210[UP5];20-21,3193-3192[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAGAUGAAGAAAUAGAUAGU&UCAAUCUAUUUCUUUAUCUCC	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN18876_c0_g1_3203_TPlot.pdf
TRINITY_DN18876_c0_g1:3204	si_a548	TRINITY_DN18876_c0_g1	3193	3213	3204	-27.20	-19.50	0.716911764705882	8.5	5-20,3209-3194	1-4,3213-3210[UP5];21-21,3193-3193[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAGAUGAAGAAAUAGAUAGUU&UUCAAUCUAUUUCUUUAUCUC	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN18876_c0_g1_3204_TPlot.pdf
TRINITY_DN18876_c0_g1:3205	si_a547	TRINITY_DN18876_c0_g1	3194	3214	3205	-26.90	-19.50	0.724907063197026	9.5	6-21,3209-3194	1-5,3214-3210[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAUGAAGAAAUAGAUAGUUC&GUUCAAUCUAUUUCUUUAUCU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN18876_c0_g1_3205_TPlot.pdf
TRINITY_DN18876_c0_g1:3623	si_s100	TRINITY_DN18876_c0_g1	3607	3632	3623	-33.70	-22.10	0.655786350148368	9.5	2-14,3631-3619;15-19,3613-3609	1-1,3632-3632[UP5];x-x,3618-3614[BULt];20-21,3608-3607[UP3]	..(((((.....(((((((((((((.&.)))))))))))))-----)))))..	UGUUUCUGCAGAAAUCCGAAGCGGAA&CUUCGCUUCGGAUU-----GGAAAAU	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN18876_c0_g1_3623_TPlot.pdf
TRINITY_DN18876_c0_g1:3740	si_a78	TRINITY_DN18876_c0_g1	3729	3749	3740	-22.30	-15.50	0.695067264573991	8	1-16,3749-3734	17-21,3733-3729[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCACCAAUAAUGAAGAACGGU&AUUGUUUUUCAUUAUUAAGAA	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN18876_c0_g1_3740_TPlot.pdf
TRINITY_DN18876_c0_g1:3741	si_a77	TRINITY_DN18876_c0_g1	3730	3750	3741	-22.20	-15.70	0.707207207207207	8	2-17,3749-3734	1-1,3750-3750[UP5];18-21,3733-3730[UP3]	....((((((((((((((((.&.))))))))))))))))....	CACCAAUAAUGAAGAACGGUA&AAUUGUUUUUCAUUAUUAAGA	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN18876_c0_g1_3741_TPlot.pdf
TRINITY_DN18876_c0_g1:3747	si_a71	TRINITY_DN18876_c0_g1	3736	3759	3747	-23.30	-18.90	0.811158798283262	9.5	1-7,3759-3753;8-21,3749-3736	x-x,3752-3750[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	UAAUGAAGAACGGUAGAUUGAAGG&CUUUCAA---AUUGUUUUUCAUUA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN18876_c0_g1_3747_TPlot.pdf
TRINITY_DN18876_c0_g1:3748	si_a70	TRINITY_DN18876_c0_g1	3737	3760	3748	-23.90	-19.10	0.799163179916318	9.5	1-8,3760-3753;9-21,3749-3737	x-x,3752-3750[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	AAUGAAGAACGGUAGAUUGAAGGA&UCUUUCAA---AUUGUUUUUCAUU	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN18876_c0_g1_3748_TPlot.pdf
TRINITY_DN18876_c0_g1:3749	si_a69	TRINITY_DN18876_c0_g1	3738	3761	3749	-24.00	-18.60	0.775	10.5	2-9,3760-3753;10-21,3749-3738	1-1,3761-3761[UP5];x-x,3752-3750[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	AUGAAGAACGGUAGAUUGAAGGAG&UUCUUUCAA---AUUGUUUUUCAU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN18876_c0_g1_3749_TPlot.pdf
TRINITY_DN18876_c0_g1:3978	si_a410	TRINITY_DN18876_c0_g1	3967	3987	3978	-17.80	-11.80	0.662921348314607	7.5	1-10,3987-3978;12-18,3976-3970	11-11,3977-3977[SIL];19-21,3969-3967[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	CAGAUUUAGAAAUAGACGAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999200367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN18876_c0_g1_3978_TPlot.pdf
TRINITY_DN18876_c0_g1:3979	si_a409	TRINITY_DN18876_c0_g1	3968	3988	3979	-19.50	-15.30	0.784615384615385	6.5	1-11,3988-3978;13-19,3976-3970	12-12,3977-3977[SIL];20-21,3969-3968[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AGAUUUAGAAAUAGACGAAAC&GUUUUGUUUAUAUUUAAAUAA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN18876_c0_g1_3979_TPlot.pdf
TRINITY_DN18876_c0_g1:3980	si_a408	TRINITY_DN18876_c0_g1	3969	3989	3980	-20.10	-16.30	0.810945273631841	4.5	1-12,3989-3978;14-20,3976-3970	13-13,3977-3977[SIL];21-21,3969-3969[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GAUUUAGAAAUAGACGAAACA&UGUUUUGUUUAUAUUUAAAUA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN18876_c0_g1_3980_TPlot.pdf
TRINITY_DN18876_c0_g1:3981	si_a407	TRINITY_DN18876_c0_g1	3970	3990	3981	-19.80	-16.60	0.838383838383838	3.5	1-13,3990-3978;15-21,3976-3970	14-14,3977-3977[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	AUUUAGAAAUAGACGAAACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN18876_c0_g1_3981_TPlot.pdf
TRINITY_DN18876_c0_g1:3982	si_a406	TRINITY_DN18876_c0_g1	3971	3991	3982	-19.80	-16.70	0.843434343434343	3.5	1-14,3991-3978;16-21,3976-3971	15-15,3977-3977[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UUUAGAAAUAGACGAAACAAU&AUUGUUUUGUUUAUAUUUAAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN18876_c0_g1_3982_TPlot.pdf
TRINITY_DN18876_c0_g1:3983	si_a405	TRINITY_DN18876_c0_g1	3972	3992	3983	-19.80	-16.20	0.818181818181818	4.5	2-15,3991-3978;17-21,3976-3972	1-1,3992-3992[UP5];16-16,3977-3977[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	UUAGAAAUAGACGAAACAAUG&AAUUGUUUUGUUUAUAUUUAA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN18876_c0_g1_3983_TPlot.pdf
TRINITY_DN18876_c0_g1:3984	si_a404	TRINITY_DN18876_c0_g1	3973	3993	3984	-21.70	-15.30	0.705069124423963	6	3-16,3991-3978;18-21,3976-3973	1-2,3993-3992[UP5];17-17,3977-3977[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UAGAAAUAGACGAAACAAUGG&GAAUUGUUUUGUUUAUAUUUA	2	0.999910579936388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN18876_c0_g1_3984_TPlot.pdf
TRINITY_DN18876_c0_g1:4076	si_a757	TRINITY_DN18876_c0_g1	4065	4090	4076	-33.10	-21.80	0.658610271903323	16.5	2-8,4089-4083;9-17,4077-4069	1-1,4090-4090[UP5];x-x,4082-4078[BULt];18-21,4068-4065[UP3]	....(((((((((.....(((((((.&.)))))))-----)))))))))....	CGGGAGAAACCCAUCAAAGAGGAGGA&ACCUCCUU-----UGGGUUUUUGAUU	3	0.99999999945869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN18876_c0_g1_4076_TPlot.pdf
TRINITY_DN18876_c0_g1:4077	si_a756	TRINITY_DN18876_c0_g1	4066	4091	4077	-33.10	-21.80	0.658610271903323	17.5	3-9,4089-4083;10-18,4077-4069	1-2,4091-4090[UP5];x-x,4082-4078[BULt];19-21,4068-4066[UP3]	...(((((((((.....(((((((..&..)))))))-----)))))))))...	GGGAGAAACCCAUCAAAGAGGAGGAU&AACCUCCUU-----UGGGUUUUUGAU	2	0.999996395299518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN18876_c0_g1_4077_TPlot.pdf
TRINITY_DN18876_c0_g1:4090	si_s69	TRINITY_DN18876_c0_g1	4079	4099	4090	-23.40	-15.40	0.658119658119658	8	1-7,4099-4093;10-20,4090-4080	8-9,4092-4091[SIL];21-21,4079-4079[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	CAAAGAGGAGGAUAAGAAGUU&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN18876_c0_g1_4090_TPlot.pdf
TRINITY_DN18876_c0_g1:4091	si_s68	TRINITY_DN18876_c0_g1	4080	4100	4091	-23.10	-15.50	0.670995670995671	7.5	2-8,4099-4093;11-21,4090-4080	1-1,4100-4100[UP5];9-10,4092-4091[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	AAAGAGGAGGAUAAGAAGUUC&CAACUUCUAUUUUUUUUCUUU	2	0.99999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN18876_c0_g1_4091_TPlot.pdf
TRINITY_DN18876_c0_g1:4764	si_s559	TRINITY_DN18876_c0_g1	4749	4773	4764	-27.80	-18.20	0.654676258992806	6	1-13,4773-4761;14-21,4756-4749	x-x,4760-4757[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	CUUGUUCUGUUAGAAAGUAUUAAUU&AAUUAAUAUUUUC----GGGACAAG	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN18876_c0_g1_4764_TPlot.pdf
TRINITY_DN18876_c0_g1:4771	si_s552	TRINITY_DN18876_c0_g1	4760	4780	4771	-21.10	-18.00	0.853080568720379	2.5	1-20,4780-4761	21-21,4760-4760[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AGAAAGUAUUAAUUUUAUUUU&AAAAUAGAAUUAAUAUUUUCG	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN18876_c0_g1_4771_TPlot.pdf
TRINITY_DN18876_c0_g1:4869	si_s552	TRINITY_DN18876_c0_g1	4857	4878	4869	-21.10	-14.20	0.672985781990521	3	1-16,4878-4863;17-20,4861-4858	x-x,4862-4862[BULt];21-21,4857-4857[UP3]	.((((.((((((((((((((((&))))))))))))))))-)))).	AGAAAUAUAUUAAUUUUAUUUU&AAAAUAGAAUUAAUAU-UUUCG	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN18876_c0_g1_4869_TPlot.pdf
TRINITY_DN18876_c0_g1:514	si_a760	TRINITY_DN18876_c0_g1	503	523	514	-31.10	-20.30	0.652733118971061	7.5	1-6,523-518;8-12,516-512;14-19,510-505	7-7,517-517[SIL];13-13,511-511[SIL];20-21,504-503[UP3]	..((((((.(((((.((((((&)))))).))))).))))))..	ACCGAUCAUGAGCCAAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999999999339336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN18876_c0_g1_514_TPlot.pdf
TRINITY_DN18879_c0_g1:187	si_a408	TRINITY_DN18879_c0_g1	176	196	187	-20.10	-13.50	0.671641791044776	10	1-13,196-184	14-21,183-176[UP3]	........(((((((((((((&)))))))))))))........	GUCAUUACUAUGAACAGAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.99999999996887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN18879_c0_g1_187_TPlot.pdf
TRINITY_DN18879_c0_g1:191	si_a404	TRINITY_DN18879_c0_g1	180	200	191	-21.70	-14.40	0.663594470046083	10.5	4-17,197-184	1-3,200-198[UP5];18-21,183-180[UP3]	....((((((((((((((...&...))))))))))))))....	UUACUAUGAACAGAACAAAAU&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN18879_c0_g1_191_TPlot.pdf
TRINITY_DN18884_c0_g1:698	si_s73	TRINITY_DN18884_c0_g1	685	707	698	-24.00	-15.60	0.65	8	1-11,707-697;13-17,694-690;18-21,688-685	12-12,696-695[AILt];x-x,689-689[BULt]	((((.(((((..(((((((((((&)))))))))))-.)))))-))))	GAAGAGAAGGUUAAAAGGAUAGA&UCUAUUUUUUU-UCUUUC-CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN18884_c0_g1_698_TPlot.pdf
TRINITY_DN18886_c0_g1:1296	si_a788	TRINITY_DN18886_c0_g1	1281	1305	1296	-24.80	-16.74	0.675	12.5	1-12,1305-1294;16-21,1286-1281	13-15,1293-1287[AILt]	((((((.......((((((((((((&))))))))))))----...))))))	UUGGAGCAGACAGAGAGAAAUAGAA&UUCUAUUUUUCU----AUUUUCCAA	4	0.999999999968221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN18886_c0_g1_1296_TPlot.pdf
TRINITY_DN18887_c0_g1:1261	si_a291	TRINITY_DN18887_c0_g1	1250	1273	1261	-27.70	-18.60	0.671480144404332	11	1-3,1273-1271;4-20,1267-1251	x-x,1270-1268[BULt];21-21,1250-1250[UP3]	.(((((((((((((((((...(((&)))---))))))))))))))))).	AAGUUUUUUUUAGAUCCGUCUGGC&GCU---UGGAUUUAAAAAAGAUUC	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN18887_c0_g1_1261_TPlot.pdf
TRINITY_DN18887_c0_g1:1282	si_s811	TRINITY_DN18887_c0_g1	1271	1291	1282	-26.40	-17.50	0.662878787878788	12.5	4-16,1288-1276	1-3,1291-1289[UP5];17-21,1275-1271[UP3]	.....(((((((((((((...&...))))))))))))).....	GGCAGAGGAAAGGGUGACUGC&UUCGUUACCUUUUCUUAAUAA	2	0.999922985686345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN18887_c0_g1_1282_TPlot.pdf
TRINITY_DN18888_c0_g2:1594	si_s90	TRINITY_DN18888_c0_g2	1582	1603	1594	-35.30	-25.60	0.725212464589235	7	1-12,1603-1592;13-17,1589-1585;19-20,1584-1583	x-x,1591-1590[BULt];18-18,x-x[BULq];21-21,1582-1582[UP3]	.((-(((((..((((((((((((&))))))))))))--))))).)).	ACG-AGCGAAAGGAAGAAGAAAG&CUUUCUUCUUCU--UCGCUUCGG	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN18888_c0_g2_1594_TPlot.pdf
TRINITY_DN18888_c0_g2:1597	si_s87	TRINITY_DN18888_c0_g2	1584	1606	1597	-32.90	-26.80	0.814589665653495	6	3-15,1604-1592;16-21,1589-1584	1-2,1606-1605[UP5];x-x,1591-1590[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	GAGCGAAAGGAAGAAGAAAGGCA&UUCCUUUCUUCUUCU--UCGCUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN18888_c0_g2_1597_TPlot.pdf
TRINITY_DN18888_c0_g2:1598	si_s86	TRINITY_DN18888_c0_g2	1585	1607	1598	-32.90	-25.60	0.778115501519757	7.5	4-16,1604-1592;17-21,1589-1585	1-3,1607-1605[UP5];x-x,1591-1590[BULt]	(((((..(((((((((((((...&...)))))))))))))--)))))	AGCGAAAGGAAGAAGAAAGGCAC&UUUCCUUUCUUCUUCU--UCGCU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN18888_c0_g2_1598_TPlot.pdf
TRINITY_DN18888_c0_g2:1600	si_s84	TRINITY_DN18888_c0_g2	1587	1609	1600	-32.30	-21.00	0.65015479876161	11.5	6-18,1604-1592;19-21,1589-1587	1-5,1609-1605[UP5];x-x,1591-1590[BULt]	(((..(((((((((((((.....&.....)))))))))))))--)))	CGAAAGGAAGAAGAAAGGCACAG&UCUUUCCUUUCUUCUUCU--UCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN18888_c0_g2_1600_TPlot.pdf
TRINITY_DN18888_c0_g2:1641	si_s79	TRINITY_DN18888_c0_g2	1630	1651	1641	-26.20	-19.80	0.755725190839695	9	1-9,1651-1643;10-19,1641-1632	x-x,1642-1642[BULt];20-21,1631-1630[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUGAGGAAAGGGCGAGAAGGAG&UUUUUUCUU-UCCUUUCUUCUU	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN18888_c0_g2_1641_TPlot.pdf
TRINITY_DN18888_c0_g2:1643	si_s78	TRINITY_DN18888_c0_g2	1631	1652	1643	-26.20	-19.80	0.755725190839695	9.5	2-10,1651-1643;11-20,1641-1632	1-1,1652-1652[UP5];x-x,1642-1642[BULt];21-21,1631-1631[UP3]	.((((((((((.(((((((((.&.)))))))))-)))))))))).	UGAGGAAAGGGCGAGAAGGAGU&UUUUUUUCUU-UCCUUUCUUCU	3	0.999999999860557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN18888_c0_g2_1643_TPlot.pdf
TRINITY_DN18888_c0_g2:1657	si_s90	TRINITY_DN18888_c0_g2	1646	1666	1657	-35.30	-23.70	0.671388101983003	6	1-4,1666-1663;6-19,1661-1648	5-5,1662-1662[SIL];20-21,1647-1646[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAGGAGUGAAGAAGAACGAAG&CUUUCUUCUUCUUCGCUUCGG	4	0.999999999998946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN18888_c0_g2_1657_TPlot.pdf
TRINITY_DN18888_c0_g2:1658	si_s89	TRINITY_DN18888_c0_g2	1647	1667	1658	-35.30	-24.10	0.68271954674221	6	2-5,1666-1663;7-20,1661-1648	1-1,1667-1667[UP5];6-6,1662-1662[SIL];21-21,1647-1647[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	AGGAGUGAAGAAGAACGAAGA&CCUUUCUUCUUCUUCGCUUCG	2	0.999998999714606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN18888_c0_g2_1658_TPlot.pdf
TRINITY_DN18888_c0_g2:1696	si_s70	TRINITY_DN18888_c0_g2	1685	1704	1696	-25.80	-17.40	0.674418604651163	9	2-5,1703-1700;9-21,1697-1685	1-1,1704-1704[UP5];6-8,1699-1698[AILq]	(((((((((((((..-((((.&.))))...)))))))))))))	GGAAAGGGAAAAAUU-GAGGG&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN18888_c0_g2_1696_TPlot.pdf
TRINITY_DN18888_c0_g2:1900	si_s90	TRINITY_DN18888_c0_g2	1888	1910	1900	-35.30	-23.70	0.671388101983003	8	1-9,1910-1902;11-13,1899-1897;14-19,1895-1890;21-21,1888-1888	10-10,1901-1900[AILt];x-x,1896-1896[BULt];20-20,1889-1889[SIL]	(.((((((.(((..(((((((((&)))))))))-.)))-)))))).)	CGGAAGCGCAGGCUAGAAGAGAG&CUUUCUUCU-UCUU-CGCUUCGG	4	0.999999999999371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN18888_c0_g2_1900_TPlot.pdf
TRINITY_DN18888_c0_g2:1902	si_s89	TRINITY_DN18888_c0_g2	1889	1911	1902	-35.30	-23.20	0.657223796033994	8.5	2-10,1910-1902;12-14,1899-1897;15-20,1895-1890	1-1,1911-1911[UP5];11-11,1901-1900[AILt];x-x,1896-1896[BULt];21-21,1889-1889[UP3]	.((((((.(((..(((((((((.&.)))))))))-.)))-)))))).	GGAAGCGCAGGCUAGAAGAGAGA&CCUUUCUUCU-UCUU-CGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN18888_c0_g2_1902_TPlot.pdf
TRINITY_DN18889_c0_g2:16	si_a625	TRINITY_DN18889_c0_g2	5	28	16	-30.60	-20.60	0.673202614379085	9	1-4,28-25;5-21,21-5	x-x,24-22[BULt]	(((((((((((((((((...((((&))))---)))))))))))))))))	AAAAUUGGCAUGAUACGGAAUCUA&UAGG---CGUAUUAUGUCGAUUUU	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN18889_c0_g2_16_TPlot.pdf
TRINITY_DN18889_c0_g2:176	si_s93	TRINITY_DN18889_c0_g2	166	185	176	-34.80	-23.50	0.675287356321839	4.5	1-12,185-174;14-18,173-169	13-13,x-x[BULq];19-21,168-166[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	CAACUGAA-CGAAGAAGAAGA&UCUUCUUCUUCGCUUCGGAUU	2	0.999991277418389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN18889_c0_g2_176_TPlot.pdf
TRINITY_DN18889_c0_g2:178	si_s91	TRINITY_DN18889_c0_g2	168	187	178	-34.70	-24.40	0.703170028818444	3.5	2-14,186-174;16-20,173-169	1-1,187-187[UP5];15-15,x-x[BULq];21-21,168-168[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	ACUGAA-CGAAGAAGAAGAAU&UUUCUUCUUCUUCGCUUCGGA	4	0.999996383167557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN18889_c0_g2_178_TPlot.pdf
TRINITY_DN18889_c0_g2:179	si_s90	TRINITY_DN18889_c0_g2	169	188	179	-35.30	-24.40	0.691218130311615	4.5	3-15,186-174;17-21,173-169	1-2,188-187[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	CUGAA-CGAAGAAGAAGAAUA&CUUUCUUCUUCUUCGCUUCGG	2	0.999968955476022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN18889_c0_g2_179_TPlot.pdf
TRINITY_DN18889_c0_g2:181	si_s73	TRINITY_DN18889_c0_g2	170	190	181	-24.00	-16.40	0.683333333333333	7.5	1-16,190-175	17-21,174-170[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGAACGAAGAAGAAGAAUAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN18889_c0_g2_181_TPlot.pdf
TRINITY_DN188_c0_g2:353	si_s627	TRINITY_DN188_c0_g2	341	362	353	-36.10	-24.60	0.681440443213296	8	2-12,361-351;13-18,349-344	1-1,362-362[UP5];x-x,350-350[BULt];19-21,343-341[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	UGAGCCUACAGAAAAGAUUGUA&AGCGAUCUUUUC-GUAGGCGUU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN188_c0_g2_353_TPlot.pdf
TRINITY_DN1890_c0_g1:1389	si_a191	TRINITY_DN1890_c0_g1	1378	1398	1389	-32.00	-21.00	0.65625	10.5	2-10,1397-1389;12-16,1387-1383	1-1,1398-1398[UP5];11-11,1388-1388[SIL];17-21,1382-1378[UP3]	.....(((((.(((((((((.&.))))))))).))))).....	AAAAUGUGGAGAGGGGAAGGC&AUCUUUCCCUGUUCACUAAUA	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN1890_c0_g1_1389_TPlot.pdf
TRINITY_DN1890_c0_g1:1390	si_a190	TRINITY_DN1890_c0_g1	1379	1399	1390	-32.00	-21.00	0.65625	11.5	3-11,1397-1389;13-17,1387-1383	1-2,1399-1398[UP5];12-12,1388-1388[SIL];18-21,1382-1379[UP3]	....(((((.(((((((((..&..))))))))).)))))....	AAAUGUGGAGAGGGGAAGGCU&UAUCUUUCCCUGUUCACUAAU	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN1890_c0_g1_1390_TPlot.pdf
TRINITY_DN1890_c0_g1:1393	si_a187	TRINITY_DN1890_c0_g1	1382	1402	1393	-32.00	-21.00	0.65625	13.5	6-14,1397-1389;16-20,1387-1383	1-5,1402-1398[UP5];15-15,1388-1388[SIL];21-21,1382-1382[UP3]	.(((((.(((((((((.....&.....))))))))).))))).	UGUGGAGAGGGGAAGGCUUAG&UAAUAUCUUUCCCUGUUCACU	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN1890_c0_g1_1393_TPlot.pdf
TRINITY_DN1890_c0_g1:1398	si_s890	TRINITY_DN1890_c0_g1	1387	1407	1398	-29.50	-19.80	0.671186440677966	15	7-20,1401-1388	1-6,1407-1402[UP5];21-21,1387-1387[UP3]	.((((((((((((((......&......)))))))))))))).	AGAGGGGAAGGCUUAGCAACA&AAUAAAUAGGCUUUCUCUUCA	2	0.995490768745023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN1890_c0_g1_1398_TPlot.pdf
TRINITY_DN1890_c1_g4:2385	si_s26	TRINITY_DN1890_c1_g4	2374	2393	2385	-26.70	-17.70	0.662921348314607	5.5	1-6,2393-2388;8-15,2387-2380;17-21,2378-2374	7-7,x-x[BULq];16-16,2379-2379[SIL]	(((((.((((((((-((((((&)))))).)))))))).)))))	AGGGGCUUAGUUGC-AUCGAU&AUUGAUUGCAACUAAAUCUUU	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN1890_c1_g4_2385_TPlot.pdf
TRINITY_DN1890_c1_g4:2604	si_a704	TRINITY_DN1890_c1_g4	2593	2613	2604	-29.30	-19.50	0.665529010238908	8	2-16,2612-2598	1-1,2613-2613[UP5];17-21,2597-2593[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAUAUUUGGAAUGUAUUAGC&ACUGGUACAUUCCAAAAUAAU	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN1890_c1_g4_2604_TPlot.pdf
TRINITY_DN1890_c1_g4:2605	si_a703	TRINITY_DN1890_c1_g4	2594	2614	2605	-29.20	-19.50	0.667808219178082	9	3-17,2612-2598	1-2,2614-2613[UP5];18-21,2597-2594[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAUAUUUGGAAUGUAUUAGCC&AACUGGUACAUUCCAAAAUAA	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN1890_c1_g4_2605_TPlot.pdf
TRINITY_DN1890_c1_g4:2706	si_a320	TRINITY_DN1890_c1_g4	2695	2716	2706	-24.40	-19.10	0.782786885245902	5	1-7,2716-2710;8-20,2708-2696	x-x,2709-2709[BULt];21-21,2695-2695[UP3]	.(((((((((((((.(((((((&)))))))-))))))))))))).	CAAUAAAAAAGUCACUGGAUGA&UUAUCCA-UGAUUUUUUUAUUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN1890_c1_g4_2706_TPlot.pdf
TRINITY_DN1890_c1_g4:2708	si_a318	TRINITY_DN1890_c1_g4	2697	2718	2708	-22.50	-20.00	0.888888888888889	4.5	1-9,2718-2710;10-21,2708-2697	x-x,2709-2709[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	AUAAAAAAGUCACUGGAUGAGU&AUUUAUCCA-UGAUUUUUUUAU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN1890_c1_g4_2708_TPlot.pdf
TRINITY_DN1890_c1_g4:2710	si_a317	TRINITY_DN1890_c1_g4	2698	2719	2710	-24.30	-22.00	0.905349794238683	4.5	1-10,2719-2710;11-21,2708-2698	x-x,2709-2709[BULt]	(((((((((((.((((((((((&))))))))))-)))))))))))	UAAAAAAGUCACUGGAUGAGUC&GAUUUAUCCA-UGAUUUUUUUA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN1890_c1_g4_2710_TPlot.pdf
TRINITY_DN1890_c1_g4:2711	si_a316	TRINITY_DN1890_c1_g4	2699	2720	2711	-26.30	-24.50	0.931558935361217	4.5	1-11,2720-2710;12-21,2708-2699	x-x,2709-2709[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	AAAAAAGUCACUGGAUGAGUCC&GGAUUUAUCCA-UGAUUUUUUU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN1890_c1_g4_2711_TPlot.pdf
TRINITY_DN1890_c1_g4:2713	si_a314	TRINITY_DN1890_c1_g4	2701	2722	2713	-27.10	-24.80	0.915129151291513	3.5	1-13,2722-2710;14-21,2708-2701	x-x,2709-2709[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	AAAAGUCACUGGAUGAGUCCAA&UUGGAUUUAUCCA-UGAUUUUU	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN1890_c1_g4_2713_TPlot.pdf
TRINITY_DN1890_c1_g4:2714	si_a313	TRINITY_DN1890_c1_g4	2702	2723	2714	-28.70	-24.10	0.839721254355401	4.5	2-14,2722-2710;15-21,2708-2702	1-1,2723-2723[UP5];x-x,2709-2709[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AAAGUCACUGGAUGAGUCCAAA&CUUGGAUUUAUCCA-UGAUUUU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN1890_c1_g4_2714_TPlot.pdf
TRINITY_DN1890_c1_g4:2715	si_a312	TRINITY_DN1890_c1_g4	2703	2728	2715	-31.20	-23.70	0.759615384615385	12.5	1-3,2728-2726;4-15,2721-2710;16-21,2708-2703	x-x,2725-2722[BULt];x-x,2709-2709[BULt]	((((((.((((((((((((....(((&)))----))))))))))))-))))))	AAGUCACUGGAUGAGUCCAAAUAGGC&GCU----UGGAUUUAUCCA-UGAUUU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN1890_c1_g4_2715_TPlot.pdf
TRINITY_DN1890_c1_g4:2716	si_a311	TRINITY_DN1890_c1_g4	2704	2729	2716	-32.70	-23.20	0.709480122324159	13.5	2-4,2728-2726;5-16,2721-2710;17-21,2708-2704	1-1,2729-2729[UP5];x-x,2725-2722[BULt];x-x,2709-2709[BULt]	(((((.((((((((((((....(((.&.)))----))))))))))))-)))))	AGUCACUGGAUGAGUCCAAAUAGGCU&CGCU----UGGAUUUAUCCA-UGAUU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN1890_c1_g4_2716_TPlot.pdf
TRINITY_DN18932_c0_g1:1532	si_a499	TRINITY_DN18932_c0_g1	1521	1543	1532	-35.20	-23.30	0.661931818181818	8.5	1-4,1543-1540;6-16,1536-1526;18-21,1524-1521	5-5,1539-1537[AILt];17-17,1525-1525[SIL]	((((.(((((((((((...((((&))))--.))))))))))).))))	CCGACGAAGACGAAGACGCCGAC&GUCG--UUUUUCGUCUUCCUUGG	2	0.999999685636867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN18932_c0_g1_1532_TPlot.pdf
TRINITY_DN18932_c0_g1:2313	si_s75	TRINITY_DN18932_c0_g1	2298	2322	2313	-24.00	-15.60	0.65	11.5	4-15,2319-2308;16-21,2303-2298	1-3,2322-2320[UP5];x-x,2307-2304[BULt]	((((((....((((((((((((...&...))))))))))))----))))))	AGAAAGCUACGAGAGAAAGAGAGAC&UAUUUUUUUUCUUUC----CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18932_c0_g1_2313_TPlot.pdf
TRINITY_DN18932_c0_g1:3006	si_s628	TRINITY_DN18932_c0_g1	2995	3022	3006	-35.40	-23.40	0.661016949152542	18	2-8,3021-3015;9-15,3007-3001;17-21,2999-2995	1-1,3022-3022[UP5];x-x,3014-3008[BULt];16-16,3000-3000[SIL]	(((((.(((((((.......(((((((.&.)))))))-------))))))).)))))	AGACGGCUGCGAAACGGGAAGAGAUCGA&GCGAUCUU-------UUCGUAGGCGUUU	4	0.999995171230596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN18932_c0_g1_3006_TPlot.pdf
TRINITY_DN18932_c0_g1:4895	si_s130	TRINITY_DN18932_c0_g1	4885	4904	4895	-28.70	-19.50	0.679442508710801	7	1-10,4904-4895;12-14,4893-4891;16-18,4890-4888	11-11,4894-4894[SIL];15-15,x-x[BULq];19-21,4887-4885[UP3]	...(((-(((.((((((((((&)))))))))).))).)))...	CAGUGA-UGAGUCAGCUCUUC&GAAGAGUUGAAUCAAUCAAAA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN18932_c0_g1_4895_TPlot.pdf
TRINITY_DN18932_c0_g1:843	si_a635	TRINITY_DN18932_c0_g1	829	852	843	-26.10	-17.40	0.666666666666667	14	3-11,850-842;12-19,838-831	1-2,852-851[UP5];x-x,841-839[BULt];20-21,830-829[UP3]	..((((((((...(((((((((..&..)))))))))---))))))))..	CAUACUCAAGAAGGAAAUCGGCCU&AUGUCGAUUUU---UUUGAGUAAU	3	0.999999999829269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN18932_c0_g1_843_TPlot.pdf
TRINITY_DN18934_c0_g2:1158	si_a362	TRINITY_DN18934_c0_g2	1147	1167	1158	-28.00	-18.40	0.657142857142857	14.5	6-18,1162-1150	1-5,1167-1163[UP5];19-21,1149-1147[UP3]	...(((((((((((((.....&.....)))))))))))))...	UACUUGGUCCGAUCGGCUUUA&CUAUUUUGAUCGGAUCAAAAA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN18934_c0_g2_1158_TPlot.pdf
TRINITY_DN18934_c0_g2:439	si_a434	TRINITY_DN18934_c0_g2	428	449	439	-36.40	-24.20	0.664835164835165	8.5	2-4,448-446;6-8,444-442;9-19,440-430	1-1,449-449[UP5];5-5,445-445[SIL];x-x,441-441[BULt];20-21,429-428[UP3]	..(((((((((((.(((.(((.&.))).)))-)))))))))))..	UGCUCAUGUCCAAGUGGCUCCG&AGGAUCCG-UUGGAUAUGAGAU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN18934_c0_g2_439_TPlot.pdf
TRINITY_DN1893_c0_g1:1114	si_a71	TRINITY_DN1893_c0_g1	1103	1122	1114	-23.30	-16.40	0.703862660944206	7.5	1-7,1122-1116;9-17,1115-1107	8-8,x-x[BULq];18-21,1106-1103[UP3]	....(((((((((-(((((((&))))))).)))))))))....	UACCGAAGAACAG-UUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1893_c0_g1_1114_TPlot.pdf
TRINITY_DN1893_c0_g1:1115	si_a70	TRINITY_DN1893_c0_g1	1104	1123	1115	-23.90	-17.80	0.744769874476988	6.5	1-8,1123-1116;10-18,1115-1107	9-9,x-x[BULq];19-21,1106-1104[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	ACCGAAGAACAG-UUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1893_c0_g1_1115_TPlot.pdf
TRINITY_DN1893_c0_g1:1116	si_a69	TRINITY_DN1893_c0_g1	1105	1124	1116	-24.00	-18.00	0.75	6.5	2-9,1123-1116;11-19,1115-1107	1-1,1124-1124[UP5];10-10,x-x[BULq];20-21,1106-1105[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	CCGAAGAACAG-UUGAAAGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1893_c0_g1_1116_TPlot.pdf
TRINITY_DN1893_c0_g1:1317	si_a764	TRINITY_DN1893_c0_g1	1306	1326	1317	-28.90	-19.40	0.671280276816609	6	2-14,1325-1313;17-21,1310-1306	1-1,1326-1326[UP5];15-16,1312-1311[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UUGGAAAAGUUAAGAACCCAU&UUGGGUUUUUGAUUGAUUCAA	2	0.999820472317368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN1893_c0_g1_1317_TPlot.pdf
TRINITY_DN1893_c0_g1:2099	si_s798	TRINITY_DN1893_c0_g1	2088	2114	2099	-29.30	-19.60	0.668941979522184	16	1-7,2114-2108;8-19,2101-2090	x-x,2107-2102[BULt];20-21,2089-2088[UP3]	..((((((((((((......(((((((&)))))))------))))))))))))..	GAAACGAAGAUAAAUUUUUUGUAUGAG&CUCGUAU------UUUAUCUUCGUUAC	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN1893_c0_g1_2099_TPlot.pdf
TRINITY_DN1893_c0_g1:2101	si_s796	TRINITY_DN1893_c0_g1	2090	2117	2101	-30.30	-19.90	0.656765676567657	16	1-2,2117-2116;3-9,2114-2108;10-21,2101-2090	x-x,2115-2115[BULt];x-x,2107-2102[BULt]	((((((((((((......(((((((.((&))-)))))))------))))))))))))	AACGAAGAUAAAUUUUUUGUAUGAGACU&AG-CUCGUAU------UUUAUCUUCGUU	4	0.999999814907777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN1893_c0_g1_2101_TPlot.pdf
TRINITY_DN18943_c0_g1:1482	si_a95	TRINITY_DN18943_c0_g1	1471	1491	1482	-28.60	-19.00	0.664335664335664	14	6-17,1486-1475	1-5,1491-1487[UP5];18-21,1474-1471[UP3]	....((((((((((((.....&.....))))))))))))....	AUACUCUUCGUUGCCUGGGAA&AGAAAAGGUAACGAAGAUAAA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a95_TRINITY_DN18943_c0_g1_1482_TPlot.pdf
TRINITY_DN18944_c0_g1:124	si_s90	TRINITY_DN18944_c0_g1	112	134	124	-35.30	-26.00	0.736543909348442	7	1-3,134-132;4-16,130-118;17-20,116-113	x-x,131-131[BULt];x-x,117-117[BULt];21-21,112-112[UP3]	.((((.(((((((((((((.(((&)))-)))))))))))))-)))).	ACGAAGGCGAAGAGGAGGACGAG&CUU-UCUUCUUCUUCGC-UUCGG	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN18944_c0_g1_124_TPlot.pdf
TRINITY_DN18944_c0_g1:275	si_s76	TRINITY_DN18944_c0_g1	264	284	275	-23.60	-15.40	0.652542372881356	9.5	1-10,284-275;13-19,272-266	11-12,274-273[SIL];20-21,265-264[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	AUGAAAGGGCCGAAGGAAGAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN18944_c0_g1_275_TPlot.pdf
TRINITY_DN1894_c0_g1:2009	si_a770	TRINITY_DN1894_c0_g1	1998	2025	2009	-28.70	-19.00	0.662020905923345	18	2-9,2024-2017;11-21,2008-1998	1-1,2025-2025[UP5];10-10,2016-2009[AILt]	(((((((((((........((((((((.&.))))))))-------.)))))))))))	GAAGAGUUGAAACGAAUAACAAUCAAGC&UUUUGAUUG-------AUUCAACUCUUC	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN1894_c0_g1_2009_TPlot.pdf
TRINITY_DN1894_c0_g1:2524	si_s72	TRINITY_DN1894_c0_g1	2512	2533	2524	-24.10	-15.90	0.659751037344398	8.5	1-4,2533-2530;6-12,2528-2522;13-19,2520-2514	5-5,2529-2529[SIL];x-x,2521-2521[BULt];20-21,2513-2512[UP3]	..(((((((.(((((((.((((&)))).)))))))-)))))))..	UCGGAGAGACAAGAAGACAGAA&UUCUAUUUUUUU-UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1894_c0_g1_2524_TPlot.pdf
TRINITY_DN18960_c0_g1:950	si_s797	TRINITY_DN18960_c0_g1	939	959	950	-30.00	-19.88	0.662666666666667	11	1-7,959-953;11-17,949-943	8-10,952-950[SIL];18-21,942-939[UP3]	....(((((((...(((((((&)))))))...)))))))....	CACAGAAGAUGUUUUACGAGC&GCUCGUAUUUUAUCUUCGUUA	4	0.999999950610235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN18960_c0_g1_950_TPlot.pdf
TRINITY_DN18960_c0_g1:951	si_s796	TRINITY_DN18960_c0_g1	940	960	951	-30.30	-19.98	0.659405940594059	11	2-8,959-953;12-18,949-943	1-1,960-960[UP5];9-11,952-950[SIL];19-21,942-940[UP3]	...(((((((...(((((((.&.)))))))...)))))))...	ACAGAAGAUGUUUUACGAGCA&AGCUCGUAUUUUAUCUUCGUU	3	0.999999618066212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN18960_c0_g1_951_TPlot.pdf
TRINITY_DN18960_c0_g1:952	si_s795	TRINITY_DN18960_c0_g1	941	961	952	-30.30	-19.98	0.659405940594059	11.5	3-9,959-953;13-19,949-943	1-2,961-960[UP5];10-12,952-950[SIL];20-21,942-941[UP3]	..(((((((...(((((((..&..)))))))...)))))))..	CAGAAGAUGUUUUACGAGCAA&AAGCUCGUAUUUUAUCUUCGU	4	0.999995553922631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN18960_c0_g1_952_TPlot.pdf
TRINITY_DN18973_c0_g1:144	si_a224	TRINITY_DN18973_c0_g1	133	153	144	-27.40	-19.60	0.715328467153285	6	2-17,152-137	1-1,153-153[UP5];18-21,136-133[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAAUAUAGAAAUAUGAGUUC&AAACUCAUGUUUCUAUAAUCA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN18973_c0_g1_144_TPlot.pdf
TRINITY_DN18973_c0_g1:146	si_a222	TRINITY_DN18973_c0_g1	135	155	146	-25.20	-19.60	0.777777777777778	8	4-19,152-137	1-3,155-153[UP5];20-21,136-135[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAUAUAGAAAUAUGAGUUCCA&UUAAACUCAUGUUUCUAUAAU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN18973_c0_g1_146_TPlot.pdf
TRINITY_DN18973_c0_g1:147	si_a221	TRINITY_DN18973_c0_g1	136	156	147	-25.20	-19.60	0.777777777777778	9	5-20,152-137	1-4,156-153[UP5];21-21,136-136[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUAUAGAAAUAUGAGUUCCAC&AUUAAACUCAUGUUUCUAUAA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN18973_c0_g1_147_TPlot.pdf
TRINITY_DN18979_c0_g1:1182	si_a871	TRINITY_DN18979_c0_g1	1171	1191	1182	-26.40	-17.40	0.659090909090909	5.5	2-4,1190-1188;6-21,1186-1171	1-1,1191-1191[UP5];5-5,1187-1187[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GAUUGUGGCUAAAUUUAUAAG&AUUAAAGAUUUAGUUGCAAUC	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN18979_c0_g1_1182_TPlot.pdf
TRINITY_DN18979_c0_g1:889	si_s693	TRINITY_DN18979_c0_g1	878	898	889	-23.90	-17.60	0.736401673640168	10	1-5,898-894;7-17,892-882	6-6,893-893[SIL];18-21,881-878[UP3]	....(((((((((((.(((((&))))).)))))))))))....	ACAAAGGUCGACUGACUGAGC&GUUUAAUUAGUCGAUUUAUUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN18979_c0_g1_889_TPlot.pdf
TRINITY_DN1897_c0_g1:4542	si_a72	TRINITY_DN1897_c0_g1	4531	4551	4542	-21.90	-14.70	0.671232876712329	7	1-15,4551-4537;18-19,4534-4533	16-17,4536-4535[SIL];20-21,4532-4531[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	AGGAGAAGAAACGAUUUGAGA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999943926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1897_c0_g1_4542_TPlot.pdf
TRINITY_DN1897_c0_g1:5117	si_a310	TRINITY_DN1897_c0_g1	5106	5127	5117	-33.70	-22.50	0.667655786350148	9.5	1-8,5127-5120;10-12,5117-5115;15-21,5112-5106	9-9,5119-5118[AILt];13-14,5114-5113[SIL]	(((((((..(((..((((((((&))))))))-.)))..)))))))	GUCGUGGUCAGAGACCGAGCGG&UCGCUUGG-AUUUAUCCAUGAU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN1897_c0_g1_5117_TPlot.pdf
TRINITY_DN1897_c0_g1:7084	si_s89	TRINITY_DN1897_c0_g1	7072	7093	7084	-35.30	-25.70	0.728045325779037	6.5	1-15,7093-7079;16-18,7077-7075	x-x,7078-7078[BULt];19-21,7074-7072[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	AUCAGCAGGAGAAGGAGAAGGG&CCUUUCUUCUUCUUC-GCUUCG	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN1897_c0_g1_7084_TPlot.pdf
TRINITY_DN18986_c0_g2:1129	si_s91	TRINITY_DN18986_c0_g2	1117	1137	1129	-34.70	-22.80	0.657060518731988	7	1-5,1137-1133;7-10,1132-1129;11-19,1127-1119	6-6,x-x[BULq];x-x,1128-1128[BULt];20-21,1118-1117[UP3]	..(((((((((.((((-(((((&))))).))))-)))))))))..	CGCGAAGCGAGCGAAG-AGAAA&UUUCUUCUUC-UUCGCUUCGGA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN18986_c0_g2_1129_TPlot.pdf
TRINITY_DN18986_c0_g2:1772	si_s75	TRINITY_DN18986_c0_g2	1760	1781	1772	-24.00	-18.70	0.779166666666667	8	3-16,1779-1766;17-21,1764-1760	1-2,1781-1780[UP5];x-x,1765-1765[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GGAAGUGGAAAGAAGAGGAAAA&UAUUUUUUUUCUUUCC-UUUCU	3	0.999999010985757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN18986_c0_g2_1772_TPlot.pdf
TRINITY_DN18986_c0_g2:1786	si_a193	TRINITY_DN18986_c0_g2	1775	1795	1786	-30.90	-20.60	0.666666666666667	8	1-8,1795-1788;10-15,1786-1781	9-9,1787-1787[SIL];16-21,1780-1775[UP3]	......((((((.((((((((&)))))))).))))))......	AGGAAAAGUGAAAAGGGAAAG&CUUUCCCUGUUCACUAAUAAA	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN18986_c0_g2_1786_TPlot.pdf
TRINITY_DN18986_c0_g2:1790	si_a189	TRINITY_DN18986_c0_g2	1779	1799	1790	-32.10	-22.10	0.688473520249221	7	3-12,1797-1788;14-19,1786-1781	1-2,1799-1798[UP5];13-13,1787-1787[SIL];20-21,1780-1779[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	AAAGUGAAAAGGGAAAGGUCG&AUAUCUUUCCCUGUUCACUAA	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN18986_c0_g2_1790_TPlot.pdf
TRINITY_DN1898_c0_g1:2046	si_a546	TRINITY_DN1898_c0_g1	2035	2054	2046	-28.60	-18.70	0.653846153846154	9	1-5,2054-2050;8-18,2048-2038	6-7,2049-2049[AILq];19-21,2037-2035[UP3]	...(((((((((((.-(((((&)))))..)))))))))))...	GCGGAAGAGGUAGAA-GAACC&GGUUCAAUCUAUUUCUUUAUC	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN1898_c0_g1_2046_TPlot.pdf
TRINITY_DN1898_c0_g1:501	si_a138	TRINITY_DN1898_c0_g1	490	510	501	-26.30	-18.10	0.688212927756654	7	1-8,510-503;11-16,500-495;18-21,493-490	9-10,502-501[SIL];17-17,494-494[SIL]	((((.((((((..((((((((&))))))))..)))))).))))	GACACCAACGAGAAAUUGCUG&UAGUAAUUAAUCGUUGUUGUU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN1898_c0_g1_501_TPlot.pdf
TRINITY_DN1898_c0_g1:684	si_a411	TRINITY_DN1898_c0_g1	673	693	684	-17.90	-13.40	0.748603351955307	8	1-15,693-679	16-21,678-673[UP3]	......(((((((((((((((&)))))))))))))))......	CAGCCCUUAGAUAUGAACAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1898_c0_g1_684_TPlot.pdf
TRINITY_DN1898_c0_g1:685	si_a410	TRINITY_DN1898_c0_g1	674	694	685	-17.80	-13.50	0.758426966292135	7.5	2-16,693-679	1-1,694-694[UP5];17-21,678-674[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGCCCUUAGAUAUGAACAAAC&UUUUGUUUAUAUUUAAAUAAA	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1898_c0_g1_685_TPlot.pdf
TRINITY_DN1898_c0_g1:687	si_a408	TRINITY_DN1898_c0_g1	676	696	687	-20.10	-13.50	0.671641791044776	9.5	4-18,693-679	1-3,696-694[UP5];19-21,678-676[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCCUUAGAUAUGAACAAACUA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999907035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN1898_c0_g1_687_TPlot.pdf
TRINITY_DN1898_c0_g1:688	si_a407	TRINITY_DN1898_c0_g1	677	697	688	-19.80	-13.50	0.681818181818182	10.5	5-19,693-679	1-4,697-694[UP5];20-21,678-677[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCUUAGAUAUGAACAAACUAG&UUGUUUUGUUUAUAUUUAAAU	2	0.999999989353871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1898_c0_g1_688_TPlot.pdf
TRINITY_DN1898_c0_g1:689	si_a406	TRINITY_DN1898_c0_g1	678	698	689	-19.80	-14.70	0.742424242424242	6.5	1-4,698-695;6-20,693-679	5-5,694-694[SIL];21-21,678-678[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CUUAGAUAUGAACAAACUAGU&AUUGUUUUGUUUAUAUUUAAA	2	0.997639373744729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1898_c0_g1_689_TPlot.pdf
TRINITY_DN1898_c0_g2:325	si_a139	TRINITY_DN1898_c0_g2	314	334	325	-25.90	-17.60	0.67953667953668	7.5	1-7,334-328;10-15,325-320;17-20,318-315	8-9,327-326[SIL];16-16,319-319[SIL];21-21,314-314[UP3]	.((((.((((((..(((((((&)))))))..)))))).)))).	UGACACCAACGAGAAAUUGCU&AGUAAUUAAUCGUUGUUGUUU	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN1898_c0_g2_325_TPlot.pdf
TRINITY_DN1898_c0_g2:326	si_a138	TRINITY_DN1898_c0_g2	315	335	326	-26.30	-18.10	0.688212927756654	7	1-8,335-328;11-16,325-320;18-21,318-315	9-10,327-326[SIL];17-17,319-319[SIL]	((((.((((((..((((((((&))))))))..)))))).))))	GACACCAACGAGAAAUUGCUG&UAGUAAUUAAUCGUUGUUGUU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN1898_c0_g2_326_TPlot.pdf
TRINITY_DN1898_c0_g2:509	si_a411	TRINITY_DN1898_c0_g2	498	518	509	-17.90	-13.40	0.748603351955307	8	1-15,518-504	16-21,503-498[UP3]	......(((((((((((((((&)))))))))))))))......	CAGCCCUUAGAUAUGAACAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN1898_c0_g2_509_TPlot.pdf
TRINITY_DN1898_c0_g2:51	si_a231	TRINITY_DN1898_c0_g2	40	61	51	-26.90	-19.00	0.706319702602231	9.5	2-9,60-53;12-21,49-40	1-1,61-61[UP5];10-11,52-50[AILt]	((((((((((...((((((((.&.))))))))-..))))))))))	AUCGGAUUGAACCGUGGAAACC&UGUUUCUAU-AAUCAAUUCGAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN1898_c0_g2_51_TPlot.pdf
TRINITY_DN1898_c0_g2:510	si_a410	TRINITY_DN1898_c0_g2	499	519	510	-17.80	-13.50	0.758426966292135	7.5	2-16,518-504	1-1,519-519[UP5];17-21,503-499[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGCCCUUAGAUAUGAACAAAC&UUUUGUUUAUAUUUAAAUAAA	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN1898_c0_g2_510_TPlot.pdf
TRINITY_DN1898_c0_g2:513	si_a407	TRINITY_DN1898_c0_g2	502	522	513	-19.80	-13.50	0.681818181818182	10.5	5-19,518-504	1-4,522-519[UP5];20-21,503-502[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCUUAGAUAUGAACAAACUAG&UUGUUUUGUUUAUAUUUAAAU	2	0.999999996066599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1898_c0_g2_513_TPlot.pdf
TRINITY_DN1898_c0_g2:514	si_a406	TRINITY_DN1898_c0_g2	503	523	514	-19.80	-14.70	0.742424242424242	6.5	1-4,523-520;6-20,518-504	5-5,519-519[SIL];21-21,503-503[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CUUAGAUAUGAACAAACUAGU&AUUGUUUUGUUUAUAUUUAAA	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1898_c0_g2_514_TPlot.pdf
TRINITY_DN1898_c6_g1:259	si_a407	TRINITY_DN1898_c6_g1	248	269	259	-19.80	-13.30	0.671717171717172	7.5	1-5,269-265;6-19,263-250	x-x,264-264[BULt];20-21,249-248[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	UGUUAGGUGUAAAUAAUGACAA&UUGUU-UUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN1898_c6_g1_259_TPlot.pdf
TRINITY_DN1899_c0_g1:745	si_a9	TRINITY_DN1899_c0_g1	734	754	745	-29.60	-20.20	0.682432432432432	8.5	1-14,754-741	15-21,740-734[UP3]	.......((((((((((((((&)))))))))))))).......	CUAUCUUGGCUUUUUCUUCAG&UUGAAGAGAAAGCCUAUUUAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN1899_c0_g1_745_TPlot.pdf
TRINITY_DN1899_c0_g1:749	si_a5	TRINITY_DN1899_c0_g1	738	758	749	-31.10	-22.90	0.736334405144695	8	3-18,756-741	1-2,758-757[UP5];19-21,740-738[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUUGGCUUUUUCUUCAGUUAG&GAAAUUGAAGAGAAAGCCUAU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN1899_c0_g1_749_TPlot.pdf
TRINITY_DN189_c0_g1:3145	si_s79	TRINITY_DN189_c0_g1	3134	3154	3145	-26.20	-18.30	0.698473282442748	11	5-13,3150-3142;15-19,3140-3136	1-4,3154-3151[UP5];14-14,3141-3141[SIL];20-21,3135-3134[UP3]	..(((((.(((((((((....&....))))))))).)))))..	GUGAAGAUAGGAAAGAGCGAG&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN189_c0_g1_3145_TPlot.pdf
TRINITY_DN189_c0_g1:3157	si_s88	TRINITY_DN189_c0_g1	3147	3172	3157	-34.80	-22.80	0.655172413793104	14.5	1-8,3172-3165;9-14,3158-3153;16-20,3152-3148	x-x,3164-3159[BULt];15-15,x-x[BULq];21-21,3147-3147[UP3]	.(((((-((((((......((((((((&))))))))------)))))).))))).	AGAGCG-AGAAGAAAGAAAAGAAAGGA&UCCUUUCU------UCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN189_c0_g1_3157_TPlot.pdf
TRINITY_DN189_c0_g1:3166	si_s85	TRINITY_DN189_c0_g1	3150	3175	3166	-33.80	-24.90	0.736686390532544	13	1-11,3175-3165;12-17,3158-3153;19-21,3152-3150	x-x,3164-3159[BULt];18-18,x-x[BULq]	(((-((((((......(((((((((((&)))))))))))------)))))).)))	GCG-AGAAGAAAGAAAAGAAAGGAAAG&CUUUCCUUUCU------UCUUCUUCGC	2	0.995260596514365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN189_c0_g1_3166_TPlot.pdf
TRINITY_DN189_c0_g1:3168	si_s83	TRINITY_DN189_c0_g1	3154	3177	3168	-30.90	-23.40	0.757281553398058	4	2-13,3176-3165;14-17,3162-3159;18-21,3157-3154	1-1,3177-3177[UP5];x-x,3164-3163[BULt];x-x,3158-3158[BULt]	((((.((((..((((((((((((.&.))))))))))))--))))-))))	GAAGAAAGAAAAGAAAGGAAAGAG&UUCUUUCCUUUCU--UCUU-CUUC	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN189_c0_g1_3168_TPlot.pdf
TRINITY_DN189_c0_g1:3179	si_s72	TRINITY_DN189_c0_g1	3168	3190	3179	-24.10	-18.60	0.771784232365145	7	1-4,3190-3187;6-21,3183-3168	5-5,3186-3184[AILt]	((((((((((((((((...((((&))))--.))))))))))))))))	AAGGAAAGAGAAAAAAGAAAGAA&UUCU--AUUUUUUUUCUUUCCUU	4	0.999997655413421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN189_c0_g1_3179_TPlot.pdf
TRINITY_DN189_c0_g1:3180	si_s71	TRINITY_DN189_c0_g1	3169	3191	3180	-25.70	-20.90	0.813229571984436	6.5	1-5,3191-3187;7-21,3183-3169	6-6,3186-3184[AILt]	(((((((((((((((...(((((&)))))--.)))))))))))))))	AGGAAAGAGAAAAAAGAAAGAAG&CUUCU--AUUUUUUUUCUUUCCU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN189_c0_g1_3180_TPlot.pdf
TRINITY_DN189_c0_g1:3181	si_s70	TRINITY_DN189_c0_g1	3170	3192	3181	-25.80	-19.80	0.767441860465116	7.5	2-6,3191-3187;8-21,3183-3170	1-1,3192-3192[UP5];7-7,3186-3184[AILt]	((((((((((((((...(((((.&.)))))--.))))))))))))))	GGAAAGAGAAAAAAGAAAGAAGG&ACUUCU--AUUUUUUUUCUUUCC	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN189_c0_g1_3181_TPlot.pdf
TRINITY_DN189_c0_g1:3189	si_s899	TRINITY_DN189_c0_g1	3180	3198	3189	-28.30	-18.40	0.65017667844523	8	1-11,3198-3188;14-17,3187-3184	12-13,x-x[BULq];18-21,3183-3180[UP3]	....((((--(((((((((((&)))))))))))..))))....	AAAAGAAA--GAAGGGAAAGC&GCUUUCUCUUCAAUUUCAAUU	4	0.99999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN189_c0_g1_3189_TPlot.pdf
TRINITY_DN189_c0_g1:3213	si_s77	TRINITY_DN189_c0_g1	3202	3222	3213	-25.50	-17.30	0.67843137254902	3.5	1-12,3222-3211;14-20,3209-3203	13-13,3210-3210[SIL];21-21,3202-3202[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AAAGAGAGAAAAGAAAGAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN189_c0_g1_3213_TPlot.pdf
TRINITY_DN18_c0_g1:2878	si_a627	TRINITY_DN18_c0_g1	2867	2887	2878	-29.50	-20.50	0.694915254237288	11	1-7,2887-2881;9-14,2879-2874	8-8,2880-2880[SIL];15-21,2873-2867[UP3]	.......((((((.(((((((&))))))).)))))).......	AUGCCUGCGACAUUGUGCGCC&GGCGUAUUAUGUCGAUUUUUU	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN18_c0_g1_2878_TPlot.pdf
TRINITY_DN18_c0_g2:1018	si_s898	TRINITY_DN18_c0_g2	1007	1027	1018	-30.70	-21.30	0.693811074918567	6.5	1-10,1027-1018;12-13,1016-1015;15-18,1013-1010	11-11,1017-1017[SIL];14-14,1014-1014[SIL];19-21,1009-1007[UP3]	...((((.((.((((((((((&)))))))))).)).))))...	CCAGAAGAUGCAGAGAAAGCC&GGCUUUCUCUUCAAUUUCAAU	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN18_c0_g2_1018_TPlot.pdf
TRINITY_DN18_c0_g2:1021	si_s895	TRINITY_DN18_c0_g2	1010	1030	1021	-31.10	-20.90	0.672025723472669	7.5	4-13,1027-1018;15-16,1016-1015;18-21,1013-1010	1-3,1030-1028[UP5];14-14,1017-1017[SIL];17-17,1014-1014[SIL]	((((.((.((((((((((...&...)))))))))).)).))))	GAAGAUGCAGAGAAAGCCAUC&AUAGGCUUUCUCUUCAAUUUC	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN18_c0_g2_1021_TPlot.pdf
TRINITY_DN18_c0_g2:1106	si_a764	TRINITY_DN18_c0_g2	1095	1116	1106	-28.90	-19.40	0.671280276816609	7	1-4,1116-1113;5-15,1111-1101;17-19,1099-1097	x-x,1112-1112[BULt];16-16,1100-1100[SIL];20-21,1096-1095[UP3]	..(((.(((((((((((.((((&))))-))))))))))).)))..	CAGAAGCAAUCAAAGGCGCCAA&UUGG-GUUUUUGAUUGAUUCAA	3	0.999998392297536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN18_c0_g2_1106_TPlot.pdf
TRINITY_DN18_c0_g2:1107	si_a763	TRINITY_DN18_c0_g2	1096	1117	1107	-28.80	-19.60	0.680555555555556	7	2-5,1116-1113;6-16,1111-1101;18-20,1099-1097	1-1,1117-1117[UP5];x-x,1112-1112[BULt];17-17,1100-1100[SIL];21-21,1096-1096[UP3]	.(((.(((((((((((.((((.&.))))-))))))))))).))).	AGAAGCAAUCAAAGGCGCCAAU&UUUGG-GUUUUUGAUUGAUUCA	2	0.999673723702483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN18_c0_g2_1107_TPlot.pdf
TRINITY_DN18_c0_g2:721	si_s773	TRINITY_DN18_c0_g2	710	730	721	-23.10	-15.30	0.662337662337662	14.5	5-17,726-714	1-4,730-727[UP5];18-21,713-710[UP3]	....(((((((((((((....&....)))))))))))))....	CAAAAUGGCAGUAGUGGCAAC&UUAAUUACUAUUGCUAUAAAA	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN18_c0_g2_721_TPlot.pdf
TRINITY_DN18_c0_g2:746	si_s79	TRINITY_DN18_c0_g2	735	755	746	-26.20	-17.50	0.66793893129771	10	2-9,754-747;11-19,745-737	1-1,755-755[UP5];10-10,746-746[SIL];20-21,736-735[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UCGGAGGGGGGCAGGAAGAGU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN18_c0_g2_746_TPlot.pdf
TRINITY_DN18_c0_g2:747	si_s78	TRINITY_DN18_c0_g2	736	756	747	-26.20	-17.50	0.66793893129771	11	3-10,754-747;12-20,745-737	1-2,756-755[UP5];11-11,746-746[SIL];21-21,736-736[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CGGAGGGGGGCAGGAAGAGUC&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN18_c0_g2_747_TPlot.pdf
TRINITY_DN18_c0_g2:748	si_a327	TRINITY_DN18_c0_g2	737	757	748	-28.40	-19.50	0.686619718309859	10.5	1-10,757-748;13-17,745-741;19-21,739-737	11-12,747-746[SIL];18-18,740-740[SIL]	(((.(((((..((((((((((&))))))))))..))))).)))	GGAGGGGGGCAGGAAGAGUCA&UGAUUUUUUUAUUCCUUGUCC	4	0.999987259542911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN18_c0_g2_748_TPlot.pdf
TRINITY_DN18_c2_g1:39	si_s189	TRINITY_DN18_c2_g1	28	49	39	-27.90	-18.40	0.659498207885305	4	1-5,49-45;6-21,43-28	x-x,44-44[BULt]	((((((((((((((((.(((((&)))))-))))))))))))))))	UAUUUCAAAAUAAUCGAUUAUU&AGUAA-CGAUUAUUUUGGAAUG	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN18_c2_g1_39_TPlot.pdf
TRINITY_DN19000_c1_g1:153	si_a361	TRINITY_DN19000_c1_g1	143	162	153	-29.00	-20.70	0.713793103448276	5	1-10,162-153;12-20,152-144	11-11,x-x[BULq];21-21,143-143[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	CUUUGGUUCG-UCAAAAUGGA&UCUAUUUUGAUCGGAUCAAAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN19000_c1_g1_153_TPlot.pdf
TRINITY_DN19001_c0_g1:639	si_s803	TRINITY_DN19001_c0_g1	628	648	639	-26.00	-17.40	0.669230769230769	13	3-11,646-638;13-19,636-630	1-2,648-647[UP5];12-12,637-637[SIL];20-21,629-628[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	GUAAGGUGGGGAGGGUGGGUC&AUUUUAUCUUCGUUACCUUUU	2	0.999999911673373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN19001_c0_g1_639_TPlot.pdf
TRINITY_DN1900_c0_g1:1668	si_a403	TRINITY_DN1900_c0_g1	1657	1677	1668	-22.00	-15.40	0.7	9	2-8,1676-1670;10-17,1668-1661	1-1,1677-1677[UP5];9-9,1669-1669[SIL];18-21,1660-1657[UP3]	....((((((((.(((((((.&.))))))).))))))))....	AACCAUGAGCAAUGCAAUUCG&AGAAUUGUUUUGUUUAUAUUU	4	0.999999634212687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN1900_c0_g1_1668_TPlot.pdf
TRINITY_DN19019_c0_g1:668	si_s80	TRINITY_DN19019_c0_g1	657	677	668	-28.20	-19.00	0.673758865248227	5.5	1-9,677-669;12-21,666-657	10-11,668-667[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GGAGAAGAAACAAAGGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN19019_c0_g1_668_TPlot.pdf
TRINITY_DN19021_c0_g1:1449	si_s254	TRINITY_DN19021_c0_g1	1438	1458	1449	-29.40	-19.80	0.673469387755102	8	1-7,1458-1452;9-12,1450-1447;14-21,1445-1438	8-8,1451-1451[SIL];13-13,1446-1446[SIL]	((((((((.((((.(((((((&))))))).)))).))))))))	UUUGAGUAUUGUGGUGGGGGA&UUUCCCGAUAUAUUACUCAAA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN19021_c0_g1_1449_TPlot.pdf
TRINITY_DN19021_c0_g1:2582	si_a350	TRINITY_DN19021_c0_g1	2571	2591	2582	-20.30	-14.10	0.694581280788177	12.5	6-20,2586-2572	1-5,2591-2587[UP5];21-21,2571-2571[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACGAAAUAGGAUUAGUUAGCU&AAAAUAUUAAUUCUAUUUUGA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN19021_c0_g1_2582_TPlot.pdf
TRINITY_DN19021_c0_g1:2880	si_a153	TRINITY_DN19021_c0_g1	2869	2889	2880	-28.70	-20.00	0.696864111498258	8.5	1-5,2889-2885;7-9,2883-2881;11-19,2879-2871	6-6,2884-2884[SIL];10-10,2880-2880[SIL];20-21,2870-2869[UP3]	..(((((((((.(((.(((((&))))).))).)))))))))..	UAGGAUUGACCCUGGUACAAC&GUUGUUUUAAGGUCAAUCUAU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN19021_c0_g1_2880_TPlot.pdf
TRINITY_DN19025_c0_g1:10964	si_s486	TRINITY_DN19025_c0_g1	10953	10973	10964	-18.10	-12.00	0.662983425414365	6	1-9,10973-10965;12-20,10962-10954	10-11,10964-10963[SIL];21-21,10953-10953[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UUUUAUAUUUCUAUAAGUAUA&UAUAUUUAUUUAAAUAUAAAC	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN19025_c0_g1_10964_TPlot.pdf
TRINITY_DN19025_c0_g1:10965	si_s485	TRINITY_DN19025_c0_g1	10954	10974	10965	-18.10	-12.10	0.668508287292818	6	2-10,10973-10965;13-21,10962-10954	1-1,10974-10974[UP5];11-12,10964-10963[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	UUUAUAUUUCUAUAAGUAUAC&CUAUAUUUAUUUAAAUAUAAA	2	0.998016861159279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN19025_c0_g1_10965_TPlot.pdf
TRINITY_DN19025_c0_g1:11061	si_a896	TRINITY_DN19025_c0_g1	11043	11070	11061	-21.60	-14.50	0.671296296296296	19	1-11,11070-11060;12-19,11052-11045	x-x,11059-11053[BULt];20-21,11044-11043[UP3]	..((((((((.......(((((((((((&)))))))))))-------))))))))..	GGAUGUUGCUUACGUUAUAUUGUUGCUA&UAGUAAUAAUA-------AGUAAUAUAA	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN19025_c0_g1_11061_TPlot.pdf
TRINITY_DN19025_c0_g1:11062	si_a895	TRINITY_DN19025_c0_g1	11044	11071	11062	-21.70	-14.50	0.668202764976959	19	2-12,11070-11060;13-20,11052-11045	1-1,11071-11071[UP5];x-x,11059-11053[BULt];21-21,11044-11044[UP3]	.((((((((.......(((((((((((.&.)))))))))))-------)))))))).	GAUGUUGCUUACGUUAUAUUGUUGCUAA&AUAGUAAUAAUA-------AGUAAUAUA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN19025_c0_g1_11062_TPlot.pdf
TRINITY_DN19025_c0_g1:9936	si_s533	TRINITY_DN19025_c0_g1	9924	9945	9936	-28.80	-20.40	0.708333333333333	7	2-13,9944-9933;14-15,9931-9930;17-19,9928-9926	1-1,9945-9945[UP5];x-x,9932-9932[BULt];16-16,9929-9929[SIL];20-21,9925-9924[UP3]	..(((.((.((((((((((((.&.))))))))))))-)).)))..	ACGAUGGGAAUCGAAGAUGAUA&AAUCAUUUUUGAU-CCGAUCAA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN19025_c0_g1_9936_TPlot.pdf
TRINITY_DN19025_c0_g1:9937	si_s532	TRINITY_DN19025_c0_g1	9925	9946	9937	-28.70	-20.40	0.710801393728223	8	3-14,9944-9933;15-16,9931-9930;18-20,9928-9926	1-2,9946-9945[UP5];x-x,9932-9932[BULt];17-17,9929-9929[SIL];21-21,9925-9925[UP3]	.(((.((.((((((((((((..&..))))))))))))-)).))).	CGAUGGGAAUCGAAGAUGAUAU&AAAUCAUUUUUGAU-CCGAUCA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN19025_c0_g1_9937_TPlot.pdf
TRINITY_DN1902_c0_g1:1471	si_a787	TRINITY_DN1902_c0_g1	1447	1480	1471	-26.30	-18.20	0.692015209125475	16	1-13,1480-1468;14-21,1454-1447	x-x,1467-1455[BULt]	((((((((.............(((((((((((((&)))))))))))))-------------))))))))	UGGAAAAUCAAAAAUCCGGCAAGAAAGGUGGAAG&CUUCUAUUUUUCU-------------AUUUUCCA	2	0.999987329205299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1902_c0_g1_1471_TPlot.pdf
TRINITY_DN1902_c0_g1:1735	si_a142	TRINITY_DN1902_c0_g1	1724	1744	1735	-23.50	-15.80	0.672340425531915	14	6-19,1739-1726	1-5,1744-1740[UP5];20-21,1725-1724[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAAGAACAGCGAUGAUCCCUC&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999992288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1902_c0_g1_1735_TPlot.pdf
TRINITY_DN1902_c0_g1:1955	si_s73	TRINITY_DN1902_c0_g1	1937	1964	1955	-24.00	-17.50	0.729166666666667	10	1-15,1964-1950;16-20,1942-1938	x-x,1949-1943[BULt];21-21,1937-1937[UP3]	.(((((.......(((((((((((((((&)))))))))))))))-------))))).	UAAGGACAAAACUAAGAAAAAAGAUGGA&UCUAUUUUUUUUCUU-------UCCUUU	3	0.999999999998648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN1902_c0_g1_1955_TPlot.pdf
TRINITY_DN1902_c0_g1:3933	si_a141	TRINITY_DN1902_c0_g1	3922	3942	3933	-23.80	-15.70	0.659663865546218	14.5	6-18,3937-3925	1-5,3942-3938[UP5];19-21,3924-3922[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCAACAGCAGCGGUUCAGAA&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999999746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN1902_c0_g1_3933_TPlot.pdf
TRINITY_DN1902_c0_g1:4978	si_s132	TRINITY_DN1902_c0_g1	4967	4987	4978	-28.40	-22.70	0.799295774647887	3	1-3,4987-4985;5-17,4983-4971;19-21,4969-4967	4-4,4984-4984[SIL];18-18,4970-4970[SIL]	(((.(((((((((((((.(((&))).))))))))))))).)))	GUUCUUGAUUGAUUCAAGUCU&AGAGUUGAAUCAAUCAAAAAC	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN1902_c0_g1_4978_TPlot.pdf
TRINITY_DN1902_c0_g1:4979	si_s131	TRINITY_DN1902_c0_g1	4968	4988	4979	-26.70	-21.40	0.801498127340824	6	2-4,4987-4985;6-18,4983-4971	1-1,4988-4988[UP5];5-5,4984-4984[SIL];19-21,4970-4968[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	UUCUUGAUUGAUUCAAGUCUA&AAGAGUUGAAUCAAUCAAAAA	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN1902_c0_g1_4979_TPlot.pdf
TRINITY_DN19038_c0_g1:2152	si_a410	TRINITY_DN19038_c0_g1	2141	2161	2152	-17.80	-11.60	0.651685393258427	11.5	5-18,2157-2144	1-4,2161-2158[UP5];19-21,2143-2141[UP3]	...((((((((((((((....&....))))))))))))))...	UUAAUUUAGGUAUAAACCGAU&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN19038_c0_g1_2152_TPlot.pdf
TRINITY_DN19039_c0_g1:135	si_s88	TRINITY_DN19039_c0_g1	117	144	135	-34.80	-25.60	0.735632183908046	10	1-17,144-128;18-21,120-117	x-x,127-121[BULt]	((((.......(((((((((((((((((&)))))))))))))))))-------))))	GAAGAACCAGAUGAAGAGGAAGAGAGGG&UCCUUUCUUCUUCUUCG-------CUUC	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN19039_c0_g1_135_TPlot.pdf
TRINITY_DN19039_c0_g1:139	si_s84	TRINITY_DN19039_c0_g1	128	148	139	-32.30	-27.50	0.851393188854489	5.5	1-3,148-146;5-20,144-129	4-4,145-145[SIL];21-21,128-128[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	UGAAGAGGAAGAGAGGGUAGA&UCUUUCCUUUCUUCUUCUUCG	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN19039_c0_g1_139_TPlot.pdf
TRINITY_DN19039_c0_g1:142	si_s81	TRINITY_DN19039_c0_g1	131	151	142	-28.90	-23.00	0.795847750865052	9.5	4-6,148-146;8-21,144-131	1-3,151-149[UP5];7-7,145-145[SIL]	((((((((((((((.(((...&...))).))))))))))))))	AGAGGAAGAGAGGGUAGACAG&UUUUCUUUCCUUUCUUCUUCU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN19039_c0_g1_142_TPlot.pdf
TRINITY_DN19039_c0_g1:168	si_s71	TRINITY_DN19039_c0_g1	157	176	168	-25.70	-17.80	0.692607003891051	5	1-5,176-172;7-12,171-166;14-21,164-157	6-6,x-x[BULq];13-13,165-165[SIL]	((((((((.((((((-(((((&))))).)))))).))))))))	AGGAGAGGCAGAAAA-AGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN19039_c0_g1_168_TPlot.pdf
TRINITY_DN1903_c0_g1:294	si_s79	TRINITY_DN1903_c0_g1	274	303	294	-26.20	-17.60	0.67175572519084	21.5	1-10,303-294;11-21,284-274	x-x,293-285[BULt]	(((((((((((.........((((((((((&))))))))))---------)))))))))))	GGGAAGAAAGGCGUACAGAUAAAGGAGAAG&UUUUUUCUUU---------CCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1903_c0_g1_294_TPlot.pdf
TRINITY_DN1903_c0_g1:430	si_a712	TRINITY_DN1903_c0_g1	419	439	430	-28.20	-20.90	0.74113475177305	4	1-8,439-432;10-20,430-420	9-9,431-431[SIL];21-21,419-419[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	UGGUAAUGAUUACUUUGGAAU&AUUCCAAAAUAAUCGUUACUC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN1903_c0_g1_430_TPlot.pdf
TRINITY_DN19048_c0_g1:124	si_a413	TRINITY_DN19048_c0_g1	113	133	124	-18.40	-12.20	0.66304347826087	5.5	1-3,133-131;5-10,129-124;12-21,122-113	4-4,130-130[SIL];11-11,123-123[SIL]	((((((((((.((((((.(((&))).)))))).))))))))))	GUAUUUAUUUCAAUAUGUACA&UGUUUAUAUUUAAAUAAAUAU	2	0.999180446586324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN19048_c0_g1_124_TPlot.pdf
TRINITY_DN1904_c0_g1:353	si_s125	TRINITY_DN1904_c0_g1	342	362	353	-27.20	-18.20	0.669117647058823	9	4-19,359-344	1-3,362-360[UP5];20-21,343-342[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAUGAUUUGACUUUUCUAGUU&AAAUAGAAGAGUUGAAUCAAU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN1904_c0_g1_353_TPlot.pdf
TRINITY_DN1904_c0_g1:355	si_s123	TRINITY_DN1904_c0_g1	344	364	355	-27.00	-18.00	0.666666666666667	11	6-21,359-344	1-5,364-360[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAUUUGACUUUUCUAGUUUC&AAAAAUAGAAGAGUUGAAUCA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN1904_c0_g1_355_TPlot.pdf
TRINITY_DN1904_c0_g1:356	si_s122	TRINITY_DN1904_c0_g1	345	364	356	-28.30	-19.30	0.681978798586572	6	1-4,364-361;7-21,359-345	5-6,360-360[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	GAUUUGACUUUUCUAG-UUUC&GAAAAAUAGAAGAGUUGAAUC	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN1904_c0_g1_356_TPlot.pdf
TRINITY_DN1904_c0_g2:382	si_s130	TRINITY_DN1904_c0_g2	370	391	382	-28.70	-20.00	0.696864111498258	4	1-15,391-377;17-21,374-370	16-16,376-375[AILt]	(((((..(((((((((((((((&)))))))))))))))-.)))))	UUUUGUUUUGAUUUAAUUCUUC&GAAGAGUUGAAUCAA-UCAAAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN1904_c0_g2_382_TPlot.pdf
TRINITY_DN1904_c0_g2:383	si_s129	TRINITY_DN1904_c0_g2	371	392	383	-29.40	-20.60	0.700680272108844	4	1-16,392-377;18-21,374-371	17-17,376-375[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	UUUGUUUUGAUUUAAUUCUUCU&AGAAGAGUUGAAUCAA-UCAAA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s129_TRINITY_DN1904_c0_g2_383_TPlot.pdf
TRINITY_DN1904_c0_g2:384	si_s128	TRINITY_DN1904_c0_g2	372	393	384	-29.80	-21.00	0.704697986577181	4	1-17,393-377;19-21,374-372	18-18,376-375[AILt]	(((..(((((((((((((((((&)))))))))))))))))-.)))	UUGUUUUGAUUUAAUUCUUCUA&UAGAAGAGUUGAAUCAA-UCAA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s128_TRINITY_DN1904_c0_g2_384_TPlot.pdf
TRINITY_DN1904_c0_g2:385	si_s127	TRINITY_DN1904_c0_g2	374	394	385	-29.90	-20.30	0.678929765886288	6	2-18,393-377	1-1,394-394[UP5];19-21,376-374[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GUUUUGAUUUAAUUCUUCUAG&AUAGAAGAGUUGAAUCAAUCA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s127_TRINITY_DN1904_c0_g2_385_TPlot.pdf
TRINITY_DN1904_c0_g2:386	si_s126	TRINITY_DN1904_c0_g2	375	395	386	-29.20	-20.30	0.695205479452055	6.5	3-19,393-377	1-2,395-394[UP5];20-21,376-375[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UUUUGAUUUAAUUCUUCUAGU&AAUAGAAGAGUUGAAUCAAUC	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN1904_c0_g2_386_TPlot.pdf
TRINITY_DN1904_c0_g2:387	si_s125	TRINITY_DN1904_c0_g2	376	396	387	-27.20	-20.30	0.746323529411765	7.5	4-20,393-377	1-3,396-394[UP5];21-21,376-376[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUUGAUUUAAUUCUUCUAGUU&AAAUAGAAGAGUUGAAUCAAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN1904_c0_g2_387_TPlot.pdf
TRINITY_DN1904_c0_g2:388	si_s124	TRINITY_DN1904_c0_g2	377	397	388	-27.10	-20.20	0.745387453874539	8.5	5-21,393-377	1-4,397-394[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUGAUUUAAUUCUUCUAGUUU&AAAAUAGAAGAGUUGAAUCAA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN1904_c0_g2_388_TPlot.pdf
TRINITY_DN1904_c0_g2:389	si_s123	TRINITY_DN1904_c0_g2	378	398	389	-27.00	-19.30	0.714814814814815	10	6-21,393-378	1-5,398-394[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAUUUAAUUCUUCUAGUUUC&AAAAAUAGAAGAGUUGAAUCA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN1904_c0_g2_389_TPlot.pdf
TRINITY_DN1904_c0_g2:390	si_s122	TRINITY_DN1904_c0_g2	379	398	390	-28.30	-20.50	0.724381625441696	5	1-4,398-395;7-21,393-379	5-6,394-394[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	GAUUUAAUUCUUCUAG-UUUC&GAAAAAUAGAAGAGUUGAAUC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN1904_c0_g2_390_TPlot.pdf
TRINITY_DN1904_c0_g2:391	si_s121	TRINITY_DN1904_c0_g2	380	399	391	-27.00	-17.60	0.651851851851852	6	2-5,398-395;8-21,393-380	1-1,399-399[UP5];6-7,394-394[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	AUUUAAUUCUUCUAG-UUUCA&AGAAAAAUAGAAGAGUUGAAU	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN1904_c0_g2_391_TPlot.pdf
TRINITY_DN19053_c0_g1:1560	si_s76	TRINITY_DN19053_c0_g1	1547	1569	1560	-23.60	-16.10	0.682203389830509	9	2-12,1568-1558;13-15,1555-1553;17-21,1551-1547	1-1,1569-1569[UP5];x-x,1557-1556[BULt];16-16,1552-1552[SIL]	(((((.(((..(((((((((((.&.)))))))))))--))).)))))	AAGAAUGGACAGAGAAAGAGAAA&AUUUUUUUUCUU--UCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN19053_c0_g1_1560_TPlot.pdf
TRINITY_DN19053_c0_g1:1748	si_a414	TRINITY_DN19053_c0_g1	1740	1757	1748	-18.10	-11.80	0.651933701657459	9	1-10,1757-1748;14-21,1747-1740	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	UGUGUUUA---GAAUGUGAAC&GUUUAUAUUUAAAUAAAUAUA	2	0.999923938277612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN19053_c0_g1_1748_TPlot.pdf
TRINITY_DN1905_c0_g1:1389	si_s316	TRINITY_DN1905_c0_g1	1378	1398	1389	-31.50	-21.80	0.692063492063492	7	1-13,1398-1386;15-16,1384-1383	14-14,1385-1385[SIL];17-21,1382-1378[UP3]	.....((.(((((((((((((&))))))))))))).)).....	UCAACGAGAAGAAGGACAGAG&UUCUGUCCUUCUUGUUACAAA	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1905_c0_g1_1389_TPlot.pdf
TRINITY_DN1905_c0_g1:1390	si_s315	TRINITY_DN1905_c0_g1	1379	1399	1390	-31.60	-23.10	0.731012658227848	6.5	1-14,1399-1386;16-17,1384-1383	15-15,1385-1385[SIL];18-21,1382-1379[UP3]	....((.((((((((((((((&)))))))))))))).))....	CAACGAGAAGAAGGACAGAGU&AUUCUGUCCUUCUUGUUACAA	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN1905_c0_g1_1390_TPlot.pdf
TRINITY_DN1905_c0_g1:1391	si_s314	TRINITY_DN1905_c0_g1	1380	1400	1391	-31.50	-24.30	0.771428571428571	5.5	1-15,1400-1386;17-18,1384-1383	16-16,1385-1385[SIL];19-21,1382-1380[UP3]	...((.(((((((((((((((&))))))))))))))).))...	AACGAGAAGAAGGACAGAGUU&AAUUCUGUCCUUCUUGUUACA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN1905_c0_g1_1391_TPlot.pdf
TRINITY_DN1905_c0_g1:1392	si_s313	TRINITY_DN1905_c0_g1	1381	1401	1392	-30.80	-24.50	0.795454545454545	5.5	2-16,1400-1386;18-19,1384-1383	1-1,1401-1401[UP5];17-17,1385-1385[SIL];20-21,1382-1381[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	ACGAGAAGAAGGACAGAGUUA&AAAUUCUGUCCUUCUUGUUAC	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN1905_c0_g1_1392_TPlot.pdf
TRINITY_DN1905_c0_g1:1395	si_s310	TRINITY_DN1905_c0_g1	1384	1404	1395	-32.10	-23.10	0.719626168224299	9	5-19,1400-1386;21-21,1384-1384	1-4,1404-1401[UP5];20-20,1385-1385[SIL]	(.(((((((((((((((....&....))))))))))))))).)	AGAAGAAGGACAGAGUUACUG&CGAAAAUUCUGUCCUUCUUGU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN1905_c0_g1_1395_TPlot.pdf
TRINITY_DN1905_c0_g1:1398	si_s307	TRINITY_DN1905_c0_g1	1387	1410	1398	-32.90	-23.42	0.711854103343465	14	3-5,1408-1406;8-21,1400-1387	1-2,1410-1409[UP5];6-7,1405-1401[AILt]	((((((((((((((.....(((..&..)))---..))))))))))))))	AGAAGGACAGAGUUACUGACGCUC&UUGCG---AAAAUUCUGUCCUUCU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN1905_c0_g1_1398_TPlot.pdf
TRINITY_DN1905_c0_g1:1399	si_s306	TRINITY_DN1905_c0_g1	1388	1411	1399	-32.30	-22.12	0.684829721362229	16	4-6,1408-1406;9-21,1400-1388	1-3,1411-1409[UP5];7-8,1405-1401[AILt]	(((((((((((((.....(((...&...)))---..)))))))))))))	GAAGGACAGAGUUACUGACGCUCU&AUUGCG---AAAAUUCUGUCCUUC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN1905_c0_g1_1399_TPlot.pdf
TRINITY_DN1905_c0_g1:1633	si_a142	TRINITY_DN1905_c0_g1	1617	1642	1633	-23.50	-15.60	0.663829787234043	18.5	4-10,1639-1633;11-20,1627-1618	1-3,1642-1640[UP5];x-x,1632-1628[BULt];21-21,1617-1617[UP3]	.((((((((((.....(((((((...&...)))))))-----)))))))))).	GUAGAGCAGCAAGACGGCGAUUACGG&AAUUAAUCGU-----UGUUGUUUUAA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN1905_c0_g1_1633_TPlot.pdf
TRINITY_DN1905_c0_g1:1910	si_a221	TRINITY_DN1905_c0_g1	1899	1919	1910	-25.20	-17.20	0.682539682539683	10.5	1-3,1919-1917;6-17,1914-1903	4-5,1916-1915[SIL];18-21,1902-1899[UP3]	....((((((((((((..(((&)))..))))))))))))....	CAUGGGAGGCAUGGGUGGAAU&AUUAAACUCAUGUUUCUAUAA	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN1905_c0_g1_1910_TPlot.pdf
TRINITY_DN1905_c0_g1:1912	si_a219	TRINITY_DN1905_c0_g1	1901	1921	1912	-25.10	-17.50	0.697211155378486	11.5	3-5,1919-1917;8-19,1914-1903	1-2,1921-1920[UP5];6-7,1916-1915[SIL];20-21,1902-1901[UP3]	..((((((((((((..(((..&..)))..))))))))))))..	UGGGAGGCAUGGGUGGAAUGA&UAAUUAAACUCAUGUUUCUAU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN1905_c0_g1_1912_TPlot.pdf
TRINITY_DN1905_c0_g1:1913	si_a218	TRINITY_DN1905_c0_g1	1902	1922	1913	-26.60	-17.50	0.657894736842105	12.5	4-6,1919-1917;9-20,1914-1903	1-3,1922-1920[UP5];7-8,1916-1915[SIL];21-21,1902-1902[UP3]	.((((((((((((..(((...&...)))..)))))))))))).	GGGAGGCAUGGGUGGAAUGAU&CUAAUUAAACUCAUGUUUCUA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN1905_c0_g1_1913_TPlot.pdf
TRINITY_DN1905_c0_g1:2144	si_a454	TRINITY_DN1905_c0_g1	2133	2153	2144	-21.30	-14.30	0.671361502347418	7	1-5,2153-2149;8-19,2146-2135	6-7,2148-2147[SIL];20-21,2134-2133[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	CCUUAUGUGUAACACGAAUUA&UAAUUGUUGUUAUAUAUAAUA	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN1905_c0_g1_2144_TPlot.pdf
TRINITY_DN1905_c0_g1:2145	si_a453	TRINITY_DN1905_c0_g1	2134	2154	2145	-21.10	-14.30	0.677725118483412	7	2-6,2153-2149;9-20,2146-2135	1-1,2154-2154[UP5];7-8,2148-2147[SIL];21-21,2134-2134[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	CUUAUGUGUAACACGAAUUAA&AUAAUUGUUGUUAUAUAUAAU	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN1905_c0_g1_2145_TPlot.pdf
TRINITY_DN1905_c0_g1:2174	si_s72	TRINITY_DN1905_c0_g1	2163	2183	2174	-24.10	-15.90	0.659751037344398	8	1-5,2183-2179;7-15,2177-2169;17-19,2167-2165	6-6,2178-2178[SIL];16-16,2168-2168[SIL];20-21,2164-2163[UP3]	..(((.(((((((((.(((((&))))).))))))))).)))..	GUGGACGGGAAGAAAUUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1905_c0_g1_2174_TPlot.pdf
TRINITY_DN1905_c0_g1:2342	si_s488	TRINITY_DN1905_c0_g1	2331	2351	2342	-18.30	-12.38	0.676502732240437	7	1-7,2351-2345;11-20,2341-2332	8-10,2344-2342[SIL];21-21,2331-2331[UP3]	.((((((((((...(((((((&)))))))...)))))))))).	AUGUUUAUAUUGUUAUAAAUA&UAUUUAUUUAAAUAUAAACAA	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN1905_c0_g1_2342_TPlot.pdf
TRINITY_DN19082_c0_g1:459	si_s89	TRINITY_DN19082_c0_g1	450	468	459	-35.30	-23.60	0.668555240793201	5	1-13,468-456;15-15,455-455;17-20,454-451	14-14,x-x[BULq];16-16,x-x[BULq];21-21,450-450[UP3]	.((((-(-(((((((((((((&))))))))))))).).)))).	AGAAG-G-AGAAGAGGGAAGG&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999999896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN19082_c0_g1_459_TPlot.pdf
TRINITY_DN19082_c0_g1:737	si_a757	TRINITY_DN19082_c0_g1	726	748	737	-33.10	-22.40	0.676737160120846	11.5	2-6,747-743;8-18,739-729	1-1,748-748[UP5];7-7,742-740[AILt];19-21,728-726[UP3]	...(((((((((((...(((((.&.)))))--.)))))))))))...	AAGCGGGAACCCAACUCGGAGGG&ACCUCC--UUUGGGUUUUUGAUU	2	0.999708299024427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN19082_c0_g1_737_TPlot.pdf
TRINITY_DN19083_c0_g1:627	si_a644	TRINITY_DN19083_c0_g1	617	635	627	-29.30	-20.60	0.703071672354949	5	1-8,635-628;10-12,627-625;14-21,624-617	9-9,x-x[BULq];13-13,x-x[BULq]	((((((((-(((-((((((((&)))))))).))).))))))))	UCCCGAUA-AUU-CUCAGAGA&UUUUUGAGUAAUAUAUCGGGA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN19083_c0_g1_627_TPlot.pdf
TRINITY_DN19083_c0_g1:628	si_a643	TRINITY_DN19083_c0_g1	618	636	628	-28.30	-19.30	0.681978798586572	5	1-9,636-628;11-13,627-625;15-21,624-618	10-10,x-x[BULq];14-14,x-x[BULq]	(((((((-(((-(((((((((&))))))))).))).)))))))	CCCGAUA-AUU-CUCAGAGAA&UUUUUUGAGUAAUAUAUCGGG	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN19083_c0_g1_628_TPlot.pdf
TRINITY_DN19088_c0_g1:1276	si_a788	TRINITY_DN19088_c0_g1	1266	1286	1276	-24.80	-16.20	0.653225806451613	5	1-5,1286-1282;6-12,1280-1274;14-21,1273-1266	x-x,1281-1281[BULt];13-13,x-x[BULq]	((((((((-(((((((.(((((&)))))-))))))).))))))))	UUGGAGAA-AGAAAAACUGGAG&UUCUA-UUUUUCUAUUUUCCAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN19088_c0_g1_1276_TPlot.pdf
TRINITY_DN19088_c0_g1:1277	si_a787	TRINITY_DN19088_c0_g1	1267	1287	1277	-26.30	-17.90	0.680608365019011	5.5	1-6,1287-1282;7-13,1280-1274;15-21,1273-1267	x-x,1281-1281[BULt];14-14,x-x[BULq]	(((((((-(((((((.((((((&))))))-))))))).)))))))	UGGAGAA-AGAAAAACUGGAGG&CUUCUA-UUUUUCUAUUUUCCA	3	0.999999999970062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN19088_c0_g1_1277_TPlot.pdf
TRINITY_DN19088_c0_g1:3357	si_a473	TRINITY_DN19088_c0_g1	3346	3366	3357	-23.00	-15.50	0.673913043478261	6	1-10,3366-3357;12-19,3355-3348	11-11,3356-3356[SIL];20-21,3347-3346[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	ACAUGUGACAUUAAUUAUAUA&UAUGUAAUUAUUGUUAUAUAG	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN19088_c0_g1_3357_TPlot.pdf
TRINITY_DN19088_c0_g1:3359	si_a471	TRINITY_DN19088_c0_g1	3348	3368	3359	-21.10	-16.50	0.781990521327014	4	2-12,3367-3357;14-21,3355-3348	1-1,3368-3368[UP5];13-13,3356-3356[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	AUGUGACAUUAAUUAUAUAUC&AAUAUGUAAUUAUUGUUAUAU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN19088_c0_g1_3359_TPlot.pdf
TRINITY_DN19088_c0_g1:3360	si_a470	TRINITY_DN19088_c0_g1	3349	3369	3360	-21.30	-15.40	0.723004694835681	6	3-13,3367-3357;15-21,3355-3349	1-2,3369-3368[UP5];14-14,3356-3356[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	UGUGACAUUAAUUAUAUAUCU&UAAUAUGUAAUUAUUGUUAUA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN19088_c0_g1_3360_TPlot.pdf
TRINITY_DN1908_c0_g1:401	si_s75	TRINITY_DN1908_c0_g1	390	410	401	-24.00	-16.90	0.704166666666667	10	5-19,406-392	1-4,410-407[UP5];20-21,391-390[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAAAAGGAAAGAGAAAAUCAG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1908_c0_g1_401_TPlot.pdf
TRINITY_DN1908_c0_g1:402	si_s74	TRINITY_DN1908_c0_g1	391	411	402	-25.00	-16.90	0.676	11	6-20,406-392	1-5,411-407[UP5];21-21,391-391[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAGGAAAGAGAAAAUCAGU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1908_c0_g1_402_TPlot.pdf
TRINITY_DN19090_c0_g1:690	si_s294	TRINITY_DN19090_c0_g1	679	699	690	-32.60	-21.90	0.671779141104294	12	6-18,694-682	1-5,699-695[UP5];19-21,681-679[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUCCGCAAUUCCAAUCAGGGU&UAGUCGAUUGGAAUUGCGAAA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN19090_c0_g1_690_TPlot.pdf
TRINITY_DN19100_c0_g1:90	si_a330	TRINITY_DN19100_c0_g1	78	99	90	-30.50	-20.10	0.659016393442623	12	4-14,96-86;16-20,83-79	1-3,99-97[UP5];15-15,85-84[AILt];21-21,78-78[UP3]	.(((((..(((((((((((...&...)))))))))))-.))))).	ACGGGAAAGGGGAGUGAAGCCA&UUUUUUUAUUCCUU-GUCCCGA	4	0.999999843083262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN19100_c0_g1_90_TPlot.pdf
TRINITY_DN19100_c0_g1:91	si_a329	TRINITY_DN19100_c0_g1	79	100	91	-29.60	-20.10	0.679054054054054	13	5-15,96-86;17-21,83-79	1-4,100-97[UP5];16-16,85-84[AILt]	(((((..(((((((((((....&....)))))))))))-.)))))	CGGGAAAGGGGAGUGAAGCCAA&AUUUUUUUAUUCCUU-GUCCCG	4	0.999994185394833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN19100_c0_g1_91_TPlot.pdf
TRINITY_DN19109_c0_g1:332	si_a818	TRINITY_DN19109_c0_g1	322	341	332	-28.90	-19.90	0.688581314878893	5.5	1-11,341-331;13-18,330-325	12-12,x-x[BULq];19-21,324-322[UP3]	...((((((-(((((((((((&))))))))))).))))))...	AACUUUUCC-UUCUUCUUCUU&AAGAAGAAGAAAGGAAAGAAA	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN19109_c0_g1_332_TPlot.pdf
TRINITY_DN1910_c0_g1:54	si_s236	TRINITY_DN1910_c0_g1	43	63	54	-29.60	-19.30	0.652027027027027	12.5	5-9,59-55;12-21,52-43	1-4,63-60[UP5];10-11,54-53[SIL]	((((((((((..(((((....&....)))))..))))))))))	AAGUGCCUAUCCGUUCCGGAU&AUAAGGAAUCAAUAGGCAUUU	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN1910_c0_g1_54_TPlot.pdf
TRINITY_DN1910_c0_g1:569	si_a454	TRINITY_DN1910_c0_g1	558	578	569	-21.30	-14.00	0.657276995305164	11	4-8,575-571;10-19,569-560	1-3,578-576[UP5];9-9,570-570[SIL];20-21,559-558[UP3]	..((((((((((.(((((...&...))))).))))))))))..	UUUUAUGUGUAAGGACAAAUU&UAAUUGUUGUUAUAUAUAAUA	2	0.999976391491964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN1910_c0_g1_569_TPlot.pdf
TRINITY_DN1910_c0_g1:782	si_s498	TRINITY_DN1910_c0_g1	769	791	782	-22.40	-17.20	0.767857142857143	4	1-14,791-778;15-20,775-770	x-x,777-776[BULt];21-21,769-769[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	AGGAGUUUGGUUUUGUUUAUAUU&AAUAUAAACAAAAC--AAUUCUA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN1910_c0_g1_782_TPlot.pdf
TRINITY_DN1910_c0_g1:785	si_s495	TRINITY_DN1910_c0_g1	774	794	785	-19.80	-14.20	0.717171717171717	9	4-17,791-778	1-3,794-792[UP5];18-21,777-774[UP3]	....((((((((((((((...&...))))))))))))))....	UUUGGUUUUGUUUAUAUUCAU&UUAAAUAUAAACAAAACAAUU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN1910_c0_g1_785_TPlot.pdf
TRINITY_DN1910_c0_g1:788	si_s492	TRINITY_DN1910_c0_g1	777	797	788	-20.10	-14.20	0.706467661691542	12	7-20,791-778	1-6,797-792[UP5];21-21,777-777[UP3]	.((((((((((((((......&......)))))))))))))).	GGUUUUGUUUAUAUUCAUUUC&UAUUUAAAUAUAAACAAAACA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN1910_c0_g1_788_TPlot.pdf
TRINITY_DN1910_c0_g1:789	si_s491	TRINITY_DN1910_c0_g1	778	798	789	-19.50	-13.80	0.707692307692308	13	8-21,791-778	1-7,798-792[UP5]	((((((((((((((.......&.......))))))))))))))	GUUUUGUUUAUAUUCAUUUCC&UUAUUUAAAUAUAAACAAAAC	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN1910_c0_g1_789_TPlot.pdf
TRINITY_DN1910_c2_g1:628	si_a450	TRINITY_DN1910_c2_g1	616	637	628	-25.20	-16.60	0.658730158730159	7.5	1-5,637-633;8-15,630-623;16-21,621-616	6-7,632-631[SIL];x-x,622-622[BULt]	((((((.((((((((..(((((&)))))..))))))))-))))))	AUAUGUCAACGACGACAAUCUC&GAGAUAAUUGUUGUU-AUAUAU	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN1910_c2_g1_628_TPlot.pdf
TRINITY_DN19127_c0_g2:18	si_a863	TRINITY_DN19127_c0_g2	7	27	18	-24.40	-16.00	0.655737704918033	7	4-13,24-15;15-21,13-7	1-3,27-25[UP5];14-14,14-14[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	CUAAAUCAUUGAUAAUUGAUU&AUCCAAUUAUUAAAGAUUUAG	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN19127_c0_g2_18_TPlot.pdf
TRINITY_DN1912_c0_g1:1139	si_s93	TRINITY_DN1912_c0_g1	1128	1149	1139	-34.80	-24.40	0.701149425287356	11.5	1-8,1149-1142;10-18,1139-1131	9-9,1141-1140[AILt];19-21,1130-1128[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	CCACCGGAGCGGUCGGAGGGGA&UCUUCUUC-UUCGCUUCGGAUU	3	0.999967176608486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1912_c0_g1_1139_TPlot.pdf
TRINITY_DN1912_c0_g1:1143	si_s90	TRINITY_DN1912_c0_g1	1131	1152	1143	-35.30	-25.20	0.713881019830028	11	3-11,1150-1142;13-21,1139-1131	1-2,1152-1151[UP5];12-12,1141-1140[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	CCGGAGCGGUCGGAGGGGAACC&CUUUCUUCUUC-UUCGCUUCGG	3	0.999971513383237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN1912_c0_g1_1143_TPlot.pdf
TRINITY_DN1912_c0_g1:1319	si_a660	TRINITY_DN1912_c0_g1	1303	1328	1319	-36.60	-24.40	0.666666666666667	11	1-12,1328-1317;16-17,1310-1309;18-21,1306-1303	13-15,1316-1311[AILt];x-x,1308-1307[BULt]	((((..((......((((((((((((&))))))))))))---...))--))))	GGAACCUCUGCCACAGGCAUUUCCCG&CGGGAAAUGCCU---AUUGA--UUCC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN1912_c0_g1_1319_TPlot.pdf
TRINITY_DN1912_c0_g1:1321	si_a658	TRINITY_DN1912_c0_g1	1310	1330	1321	-33.40	-23.90	0.715568862275449	8	2-14,1329-1317	1-1,1330-1330[UP5];15-21,1316-1310[UP3]	.......(((((((((((((.&.))))))))))))).......	CUGCCACAGGCAUUUCCCGAC&AUCGGGAAAUGCCUAUUGAUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN1912_c0_g1_1321_TPlot.pdf
TRINITY_DN1912_c0_g1:1322	si_a657	TRINITY_DN1912_c0_g1	1311	1331	1322	-33.80	-23.90	0.707100591715976	9	3-15,1329-1317	1-2,1331-1330[UP5];16-21,1316-1311[UP3]	......(((((((((((((..&..)))))))))))))......	UGCCACAGGCAUUUCCCGACC&UAUCGGGAAAUGCCUAUUGAU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN1912_c0_g1_1322_TPlot.pdf
TRINITY_DN1912_c0_g1:1324	si_a655	TRINITY_DN1912_c0_g1	1313	1333	1324	-33.20	-23.90	0.719879518072289	11	5-17,1329-1317	1-4,1333-1330[UP5];18-21,1316-1313[UP3]	....(((((((((((((....&....)))))))))))))....	CCACAGGCAUUUCCCGACCCA&UAUAUCGGGAAAUGCCUAUUG	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a655_TRINITY_DN1912_c0_g1_1324_TPlot.pdf
TRINITY_DN1912_c0_g1:1325	si_a654	TRINITY_DN1912_c0_g1	1314	1334	1325	-31.70	-23.90	0.753943217665615	12	6-18,1329-1317	1-5,1334-1330[UP5];19-21,1316-1314[UP3]	...(((((((((((((.....&.....)))))))))))))...	CACAGGCAUUUCCCGACCCAC&AUAUAUCGGGAAAUGCCUAUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a654_TRINITY_DN1912_c0_g1_1325_TPlot.pdf
TRINITY_DN1912_c0_g1:1418	si_a276	TRINITY_DN1912_c0_g1	1397	1427	1418	-37.90	-26.10	0.688654353562005	13	1-10,1427-1418;11-14,1416-1413;15-21,1403-1397	x-x,1417-1417[BULt];x-x,1412-1404[BULt]	(((((((.........((((.((((((((((&))))))))))-))))---------)))))))	CCGGGCGUUUGUACUUAUCUAUUUCGUGGGC&GCCUACGAAA-AGAU---------CGCUUGG	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN1912_c0_g1_1418_TPlot.pdf
TRINITY_DN1912_c0_g1:1463	si_a795	TRINITY_DN1912_c0_g1	1451	1472	1463	-30.20	-20.60	0.682119205298013	7	1-5,1472-1468;7-11,1466-1462;12-20,1460-1452	6-6,1467-1467[SIL];x-x,1461-1461[BULt];21-21,1451-1451[UP3]	.(((((((((.(((((.(((((&))))).)))))-))))))))).	UUUCGGAUUGCGGAGAGAGAAA&UUUCUAUUUUC-CAAUCCGAAG	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN1912_c0_g1_1463_TPlot.pdf
TRINITY_DN1912_c0_g1:1633	si_s100	TRINITY_DN1912_c0_g1	1621	1644	1633	-33.70	-22.40	0.664688427299703	9	1-5,1644-1640;6-14,1637-1629;15-18,1627-1624	x-x,1639-1638[BULt];x-x,1628-1628[BULt];19-21,1623-1621[UP3]	...((((.(((((((((..(((((&)))))--)))))))))-))))...	GUCUUCCGAAUCCGGAGGACGAAG&CUUCG--CUUCGGAUU-GGAAAAU	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN1912_c0_g1_1633_TPlot.pdf
TRINITY_DN1912_c0_g1:1634	si_s99	TRINITY_DN1912_c0_g1	1622	1645	1634	-34.60	-24.00	0.69364161849711	8	1-6,1645-1640;7-15,1637-1629;16-19,1627-1624	x-x,1639-1638[BULt];x-x,1628-1628[BULt];20-21,1623-1622[UP3]	..((((.(((((((((..((((((&))))))--)))))))))-))))..	UCUUCCGAAUCCGGAGGACGAAGA&UCUUCG--CUUCGGAUU-GGAAAA	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN1912_c0_g1_1634_TPlot.pdf
TRINITY_DN1912_c0_g1:1639	si_a501	TRINITY_DN1912_c0_g1	1624	1648	1639	-33.50	-26.10	0.77910447761194	7.5	2-15,1647-1634;16-21,1629-1624	1-1,1648-1648[UP5];x-x,1633-1630[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	UUCCGAAUCCGGAGGACGAAGAACC&CGUUUUUCGUCUUCC----UUGGAA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN1912_c0_g1_1639_TPlot.pdf
TRINITY_DN1912_c0_g1:1640	si_a500	TRINITY_DN1912_c0_g1	1625	1649	1640	-34.40	-25.20	0.732558139534884	9	3-16,1647-1634;17-21,1629-1625	1-2,1649-1648[UP5];x-x,1633-1630[BULt]	(((((....((((((((((((((..&..))))))))))))))----)))))	UCCGAAUCCGGAGGACGAAGAACCC&UCGUUUUUCGUCUUCC----UUGGA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1912_c0_g1_1640_TPlot.pdf
TRINITY_DN1912_c0_g1:1641	si_a499	TRINITY_DN1912_c0_g1	1626	1650	1641	-35.20	-23.10	0.65625	11	4-17,1647-1634;18-21,1629-1626	1-3,1650-1648[UP5];x-x,1633-1630[BULt]	((((....((((((((((((((...&...))))))))))))))----))))	CCGAAUCCGGAGGACGAAGAACCCU&GUCGUUUUUCGUCUUCC----UUGG	2	0.999999974238713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN1912_c0_g1_1641_TPlot.pdf
TRINITY_DN1912_c0_g1:1642	si_a498	TRINITY_DN1912_c0_g1	1631	1651	1642	-33.50	-22.10	0.659701492537313	11.5	5-18,1647-1634	1-4,1651-1648[UP5];19-21,1633-1631[UP3]	...((((((((((((((....&....))))))))))))))...	UCCGGAGGACGAAGAACCCUC&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999999951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN1912_c0_g1_1642_TPlot.pdf
TRINITY_DN1912_c0_g1:1643	si_a497	TRINITY_DN1912_c0_g1	1632	1652	1643	-32.00	-22.10	0.690625	12.5	6-19,1647-1634	1-5,1652-1648[UP5];20-21,1633-1632[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCGGAGGACGAAGAACCCUCG&AUGUCGUUUUUCGUCUUCCUU	2	0.99999648392122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN1912_c0_g1_1643_TPlot.pdf
TRINITY_DN1912_c0_g1:1644	si_a496	TRINITY_DN1912_c0_g1	1633	1653	1644	-32.40	-22.10	0.682098765432099	13.5	7-20,1647-1634	1-6,1653-1648[UP5];21-21,1633-1633[UP3]	.((((((((((((((......&......)))))))))))))).	CGGAGGACGAAGAACCCUCGU&UAUGUCGUUUUUCGUCUUCCU	3	0.99999988890655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1912_c0_g1_1644_TPlot.pdf
TRINITY_DN1912_c0_g1:1821	si_a634	TRINITY_DN1912_c0_g1	1810	1832	1821	-26.40	-17.20	0.651515151515151	15	4-9,1829-1824;10-19,1821-1812	1-3,1832-1830[UP5];x-x,1823-1822[BULt];20-21,1811-1810[UP3]	..((((((((((..((((((...&...))))))--))))))))))..	AAGCUCAGAAGGUCGUCGACCAC&UAUGUCGAU--UUUUUUGAGUAA	2	0.999999958660166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN1912_c0_g1_1821_TPlot.pdf
TRINITY_DN19147_c0_g1:466	si_s77	TRINITY_DN19147_c0_g1	455	475	466	-25.50	-17.40	0.68235294117647	8.5	1-14,475-462;16-18,460-458	15-15,461-461[SIL];19-21,457-455[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	AAUGAGUGGAAGGAAGAGAGA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN19147_c0_g1_466_TPlot.pdf
TRINITY_DN1914_c0_g1:702	si_s802	TRINITY_DN1914_c0_g1	691	711	702	-26.40	-17.30	0.65530303030303	15.5	8-20,704-692	1-7,711-705[UP5];21-21,691-691[UP3]	.(((((((((((((.......&.......))))))))))))).	CAAGGUAAUGAGGAAACAACU&UAUUUUAUCUUCGUUACCUUU	3	0.999999999990747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN1914_c0_g1_702_TPlot.pdf
TRINITY_DN19167_c0_g1:140	si_s7	TRINITY_DN19167_c0_g1	129	148	140	-21.70	-14.90	0.686635944700461	7	1-7,148-142;9-18,141-132	8-8,x-x[BULq];19-21,131-129[UP3]	...((((((((((-(((((((&))))))).))))))))))...	AACUAGUAAUAAU-GGUGAUA&UAUUACUUAUUAUUACUAUAU	2	0.994632443542017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN19167_c0_g1_140_TPlot.pdf
TRINITY_DN19167_c0_g1:141	si_s6	TRINITY_DN19167_c0_g1	130	149	141	-21.70	-14.90	0.686635944700461	7	2-8,148-142;10-19,141-132	1-1,149-149[UP5];9-9,x-x[BULq];20-21,131-130[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	ACUAGUAAUAAU-GGUGAUAG&AUAUUACUUAUUAUUACUAUA	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN19167_c0_g1_141_TPlot.pdf
TRINITY_DN19181_c0_g1:143	si_s552	TRINITY_DN19181_c0_g1	132	152	143	-21.10	-14.50	0.687203791469194	8.5	4-14,149-139;16-20,137-133	1-3,152-150[UP5];15-15,138-138[SIL];21-21,132-132[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	AGAAAAAGUUAAUUCUGUGGC&AAAAUAGAAUUAAUAUUUUCG	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN19181_c0_g1_143_TPlot.pdf
TRINITY_DN19181_c0_g1:144	si_s551	TRINITY_DN19181_c0_g1	133	153	144	-21.30	-14.10	0.661971830985915	9.5	5-15,149-139;17-21,137-133	1-4,153-150[UP5];16-16,138-138[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GAAAAAGUUAAUUCUGUGGCU&CAAAAUAGAAUUAAUAUUUUC	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN19181_c0_g1_144_TPlot.pdf
TRINITY_DN1918_c0_g1:885	si_a641	TRINITY_DN1918_c0_g1	874	894	885	-23.60	-15.40	0.652542372881356	5	2-15,893-880;17-20,878-875	1-1,894-894[UP5];16-16,879-879[SIL];21-21,874-874[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AGAUAGAUUAUUCGAAAAAAA&AUUUUUUUGAGUAAUAUAUCG	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN1918_c0_g1_885_TPlot.pdf
TRINITY_DN1918_c0_g1:886	si_a640	TRINITY_DN1918_c0_g1	875	896	886	-24.10	-16.10	0.66804979253112	4	1-9,896-888;10-16,886-880;18-21,878-875	x-x,887-887[BULt];17-17,879-879[SIL]	((((.(((((((.(((((((((&)))))))))-))))))).))))	GAUAGAUUAUUCGAAAAAAAUC&GAUUUUUUU-GAGUAAUAUAUC	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN1918_c0_g1_886_TPlot.pdf
TRINITY_DN1918_c1_g1:2275	si_s74	TRINITY_DN1918_c1_g1	2264	2286	2275	-25.00	-17.68	0.7072	12	1-8,2286-2279;11-20,2274-2265	9-10,2278-2275[AILt];21-21,2264-2264[UP3]	.((((((((((....((((((((&))))))))--..)))))))))).	UAAAGGAAAGAUUGUAGAGAUGG&CUAUUUUU--UUUCUUUCCUUUC	4	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN1918_c1_g1_2275_TPlot.pdf
TRINITY_DN19190_c1_g1:25	si_a497	TRINITY_DN19190_c1_g1	15	34	25	-32.00	-21.90	0.684375	7	2-11,33-24;13-21,23-15	1-1,34-34[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AGGGGGGGC-AAGAACGAUAA&AUGUCGUUUUUCGUCUUCCUU	4	0.999999999959288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN19190_c1_g1_25_TPlot.pdf
TRINITY_DN19191_c0_g3:254	si_a285	TRINITY_DN19191_c0_g3	243	262	254	-28.30	-19.20	0.678445229681979	6	2-6,261-257;8-21,256-243	1-1,262-262[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	UUUUUGAGUUCAGG-GAUCUC&AAGAUCGCUUGGAUUUAAAAA	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN19191_c0_g3_254_TPlot.pdf
TRINITY_DN19194_c0_g1:978	si_s485	TRINITY_DN19194_c0_g1	967	987	978	-18.10	-13.40	0.740331491712707	7.5	1-6,987-982;8-18,980-970	7-7,981-981[SIL];19-21,969-967[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	GACAUGUUUAAAUAUGUAUGG&CUAUAUUUAUUUAAAUAUAAA	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN19194_c0_g1_978_TPlot.pdf
TRINITY_DN191_c0_g1:1417	si_a863	TRINITY_DN191_c0_g1	1406	1426	1417	-24.40	-16.50	0.676229508196721	7	2-8,1425-1419;10-13,1417-1414;15-21,1412-1406	1-1,1426-1426[UP5];9-9,1418-1418[SIL];14-14,1413-1413[SIL]	(((((((.((((.(((((((.&.))))))).)))).)))))))	CUGGAUCAUUGAAAGUUGGAG&AUCCAAUUAUUAAAGAUUUAG	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN191_c0_g1_1417_TPlot.pdf
TRINITY_DN191_c0_g1:2364	si_a633	TRINITY_DN191_c0_g1	2352	2373	2364	-26.40	-17.60	0.666666666666667	9	1-10,2373-2364;12-19,2361-2354	11-11,2363-2362[AILt];20-21,2353-2352[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	UCUUCGAGGAUUAUCGACAUGA&UUAUGUCGAU-UUUUUUGAGUA	3	0.999999996785422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN191_c0_g1_2364_TPlot.pdf
TRINITY_DN191_c0_g1:2365	si_a632	TRINITY_DN191_c0_g1	2353	2374	2365	-26.10	-17.60	0.674329501915709	9	2-11,2373-2364;13-20,2361-2354	1-1,2374-2374[UP5];12-12,2363-2362[AILt];21-21,2353-2353[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	CUUCGAGGAUUAUCGACAUGAG&AUUAUGUCGAU-UUUUUUGAGU	4	0.999999348004209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN191_c0_g1_2365_TPlot.pdf
TRINITY_DN191_c0_g1:2366	si_a631	TRINITY_DN191_c0_g1	2354	2375	2366	-25.70	-17.50	0.680933852140078	9	3-12,2373-2364;14-21,2361-2354	1-2,2375-2374[UP5];13-13,2363-2362[AILt]	((((((((..((((((((((..&..))))))))))-.))))))))	UUCGAGGAUUAUCGACAUGAGA&UAUUAUGUCGAU-UUUUUUGAG	4	0.999888699892308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN191_c0_g1_2366_TPlot.pdf
TRINITY_DN191_c0_g1:2367	si_a630	TRINITY_DN191_c0_g1	2355	2376	2367	-25.80	-16.90	0.655038759689922	9.5	4-13,2373-2364;15-21,2361-2355	1-3,2376-2374[UP5];14-14,2363-2362[AILt]	(((((((..((((((((((...&...))))))))))-.)))))))	UCGAGGAUUAUCGACAUGAGAA&GUAUUAUGUCGAU-UUUUUUGA	2	0.99998394891348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN191_c0_g1_2367_TPlot.pdf
TRINITY_DN191_c0_g1:2549	si_a291	TRINITY_DN191_c0_g1	2538	2558	2549	-27.70	-19.50	0.703971119133574	8	1-13,2558-2546;16-17,2543-2542	14-15,2545-2544[SIL];18-21,2541-2538[UP3]	....((..(((((((((((((&)))))))))))))..))....	AUGGCUGGUUUGAAUCCGAGC&GCUUGGAUUUAAAAAAGAUUC	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN191_c0_g1_2549_TPlot.pdf
TRINITY_DN191_c0_g1:2550	si_a290	TRINITY_DN191_c0_g1	2539	2559	2550	-27.20	-19.60	0.720588235294118	8	2-14,2558-2546;17-18,2543-2542	1-1,2559-2559[UP5];15-16,2545-2544[SIL];19-21,2541-2539[UP3]	...((..(((((((((((((.&.)))))))))))))..))...	UGGCUGGUUUGAAUCCGAGCA&CGCUUGGAUUUAAAAAAGAUU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a290_TRINITY_DN191_c0_g1_2550_TPlot.pdf
TRINITY_DN191_c0_g1:2551	si_a289	TRINITY_DN191_c0_g1	2540	2560	2551	-28.20	-19.60	0.695035460992908	9	3-15,2558-2546;18-19,2543-2542	1-2,2560-2559[UP5];16-17,2545-2544[SIL];20-21,2541-2540[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	GGCUGGUUUGAAUCCGAGCAA&UCGCUUGGAUUUAAAAAAGAU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN191_c0_g1_2551_TPlot.pdf
TRINITY_DN191_c0_g1:2965	si_a613	TRINITY_DN191_c0_g1	2954	2973	2965	-35.30	-24.30	0.688385269121813	4.5	1-9,2973-2965;11-16,2964-2959;18-21,2957-2954	10-10,x-x[BULq];17-17,2958-2958[SIL]	((((.((((((-(((((((((&))))))))).)))))).))))	AUACACCUGGU-GAUUGGAGU&AUUCCAAUCGACUAGGCGUAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN191_c0_g1_2965_TPlot.pdf
TRINITY_DN19219_c0_g1:1004	si_s75	TRINITY_DN19219_c0_g1	993	1013	1004	-24.00	-15.90	0.6625	10	3-16,1011-998	1-2,1013-1012[UP5];17-21,997-993[UP3]	.....((((((((((((((..&..)))))))))))))).....	GCGGUGGAAAGAAGAAGAAAG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN19219_c0_g1_1004_TPlot.pdf
TRINITY_DN19223_c0_g2:977	si_a327	TRINITY_DN19223_c0_g2	966	987	977	-28.40	-20.70	0.72887323943662	9.5	3-9,985-979;10-21,977-966	1-2,987-986[UP5];x-x,978-978[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GGACGGGGGAUGUAGAGAAUAA&UGAUUUUUU-UAUUCCUUGUCC	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN19223_c0_g2_977_TPlot.pdf
TRINITY_DN19223_c0_g2:979	si_a326	TRINITY_DN19223_c0_g2	967	988	979	-26.20	-17.60	0.67175572519084	11.5	4-10,985-979;11-21,977-967	1-3,988-986[UP5];x-x,978-978[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GACGGGGGAUGUAGAGAAUAAU&AUGAUUUUUU-UAUUCCUUGUC	2	0.999981363345207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN19223_c0_g2_979_TPlot.pdf
TRINITY_DN19227_c0_g1:1203	si_s808	TRINITY_DN19227_c0_g1	1192	1212	1203	-28.60	-19.50	0.681818181818182	7.5	1-11,1212-1202;13-19,1200-1194	12-12,1201-1201[SIL];20-21,1193-1192[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UGGAGGAAGUGUGAUGAAGAU&AUCUUCGUUACCUUUUCUUAA	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN19227_c0_g1_1203_TPlot.pdf
TRINITY_DN19227_c0_g1:1205	si_s806	TRINITY_DN19227_c0_g1	1194	1214	1205	-28.60	-21.20	0.741258741258741	5.5	1-13,1214-1202;15-21,1200-1194	14-14,1201-1201[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAGGAAGUGUGAUGAAGAUGA&UUAUCUUCGUUACCUUUUCUU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN19227_c0_g1_1205_TPlot.pdf
TRINITY_DN19227_c0_g1:1207	si_s804	TRINITY_DN19227_c0_g1	1195	1216	1207	-27.90	-19.10	0.684587813620072	8.5	3-15,1214-1202;16-20,1200-1196	1-2,1216-1215[UP5];x-x,1201-1201[BULt];21-21,1195-1195[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	AGGAAGUGUGAUGAAGAUGACG&UUUUAUCUUCGUUAC-CUUUUC	3	0.999999353490657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN19227_c0_g1_1207_TPlot.pdf
TRINITY_DN19227_c0_g1:1208	si_s803	TRINITY_DN19227_c0_g1	1196	1217	1208	-26.00	-18.90	0.726923076923077	9.5	4-16,1214-1202;17-21,1200-1196	1-3,1217-1215[UP5];x-x,1201-1201[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GGAAGUGUGAUGAAGAUGACGA&AUUUUAUCUUCGUUAC-CUUUU	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN19227_c0_g1_1208_TPlot.pdf
TRINITY_DN19227_c0_g1:1209	si_s802	TRINITY_DN19227_c0_g1	1197	1218	1209	-26.40	-18.60	0.704545454545455	10.5	5-17,1214-1202;18-21,1200-1197	1-4,1218-1215[UP5];x-x,1201-1201[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GAAGUGUGAUGAAGAUGACGAU&UAUUUUAUCUUCGUUAC-CUUU	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN19227_c0_g1_1209_TPlot.pdf
TRINITY_DN19227_c0_g1:1252	si_s518	TRINITY_DN19227_c0_g1	1239	1261	1252	-24.60	-17.28	0.702439024390244	9.5	1-14,1261-1248;17-21,1243-1239	15-16,1247-1244[AILt]	(((((....((((((((((((((&))))))))))))))--..)))))	GUGAUAUGACGAGUUGAGGGUGU&AUAUUCUUAAUUCG--AAAUCAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN19227_c0_g1_1252_TPlot.pdf
TRINITY_DN19227_c0_g1:1253	si_s517	TRINITY_DN19227_c0_g1	1240	1262	1253	-24.80	-16.58	0.668548387096774	9.5	1-15,1262-1248;18-21,1243-1240	16-17,1247-1244[AILt]	((((....(((((((((((((((&)))))))))))))))--..))))	UGAUAUGACGAGUUGAGGGUGUG&UAUAUUCUUAAUUCG--AAAUCA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s517_TRINITY_DN19227_c0_g1_1253_TPlot.pdf
TRINITY_DN19227_c0_g1:1258	si_s512	TRINITY_DN19227_c0_g1	1247	1267	1258	-24.80	-16.20	0.653225806451613	15	6-20,1262-1248	1-5,1267-1263[UP5];21-21,1247-1247[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACGAGUUGAGGGUGUGUUUUA&AAUUCUAUAUUCUUAAUUCGA	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN19227_c0_g1_1258_TPlot.pdf
TRINITY_DN19227_c0_g1:1332	si_s260	TRINITY_DN19227_c0_g1	1322	1341	1332	-24.10	-16.20	0.672199170124481	4	1-11,1341-1331;15-21,1328-1322	12-14,1330-1329[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	GAUUUUUAA-AGUAAUAUAUC&GAUAUAUUACUCAAAAAAAUC	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN19227_c0_g1_1332_TPlot.pdf
TRINITY_DN19227_c0_g1:851	si_a123	TRINITY_DN19227_c0_g1	840	863	851	-26.60	-18.52	0.696240601503759	15.5	1-7,863-857;10-20,851-841	8-9,856-852[AILt];21-21,840-840[UP3]	.(((((((((((.....(((((((&)))))))---..))))))))))).	GUACUGUUGCUGAUUCUGAACGGG&CUUGUUU---UAUAGCAAUAGUAA	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN19227_c0_g1_851_TPlot.pdf
TRINITY_DN19230_c0_g1:935	si_s482	TRINITY_DN19230_c0_g1	924	944	935	-21.20	-15.60	0.735849056603774	3.5	1-8,944-937;10-16,935-929;18-21,927-924	9-9,936-936[SIL];17-17,928-928[SIL]	((((.(((((((.((((((((&)))))))).))))))).))))	AUAUGUGAAUAAUUAUAGGAU&AUCCUAUAUUUAUUUAAAUAU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN19230_c0_g1_935_TPlot.pdf
TRINITY_DN19231_c0_g2:670	si_a765	TRINITY_DN19231_c0_g2	659	679	670	-30.50	-20.00	0.655737704918033	8	2-16,678-664;18-18,662-662	1-1,679-679[UP5];17-17,663-663[SIL];19-21,661-659[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	UCGGCGUUAGUCAAAGACCCU&UGGGUUUUUGAUUGAUUCAAC	1	0.100308927516549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN19231_c0_g2_670_TPlot.pdf
TRINITY_DN19233_c0_g1:143	si_s68	TRINITY_DN19233_c0_g1	132	153	143	-23.10	-15.20	0.658008658008658	12.5	1-1,153-153;4-8,150-146;10-21,143-132	2-3,152-151[SIL];9-9,145-144[AILt]	((((((((((((..(((((..(&)..)))))-.))))))))))))	AAAGAAAAGAGGGGGGGAGGGG&CAACUUCU-AUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN19233_c0_g1_143_TPlot.pdf
TRINITY_DN19233_c0_g1:145	si_s83	TRINITY_DN19233_c0_g1	135	154	145	-30.90	-21.80	0.705501618122977	7.5	1-17,154-138;19-21,137-135	18-18,x-x[BULq]	(((-(((((((((((((((((&))))))))))))))))).)))	GAA-AAGAGGGGGGGAGGGGA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN19233_c0_g1_145_TPlot.pdf
TRINITY_DN19233_c0_g1:148	si_s80	TRINITY_DN19233_c0_g1	137	157	148	-28.20	-20.70	0.734042553191489	11.5	4-20,154-138	1-3,157-155[UP5];21-21,137-137[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGAGGGGGGGAGGGGACUU&UUUUUCUUUCCUUUCUUCUUC	4	0.999999999999396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN19233_c0_g1_148_TPlot.pdf
TRINITY_DN19233_c1_g1:273	si_a481	TRINITY_DN19233_c1_g1	263	282	273	-25.60	-18.60	0.7265625	4.5	2-10,281-273;12-21,272-263	1-1,282-282[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	GACAUGUUCU-UAUAAUAAUU&UAUUGUUAUAUAGAAUAUGUC	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN19233_c1_g1_273_TPlot.pdf
TRINITY_DN1923_c0_g2:759	si_s489	TRINITY_DN1923_c0_g2	748	768	759	-17.90	-12.10	0.675977653631285	9	2-9,767-760;11-19,758-750	1-1,768-768[UP5];10-10,759-759[SIL];20-21,749-748[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CAUGUUUAUAUAUGGAUGAGG&AUUUAUUUAAAUAUAAACAAA	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN1923_c0_g2_759_TPlot.pdf
TRINITY_DN1924_c0_g1:966	si_a69	TRINITY_DN1924_c0_g1	955	976	966	-24.00	-16.70	0.695833333333333	5.5	1-6,976-971;7-15,969-961;17-21,959-955	x-x,970-970[BULt];16-16,960-960[SIL]	(((((.(((((((((.((((((&))))))-))))))))).)))))	AUGGACGGCAAUUUGCAAAGGA&UUCUUU-CAAAUUGUUUUUCAU	2	0.999788942765203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1924_c0_g1_966_TPlot.pdf
TRINITY_DN1924_c0_g1:967	si_a68	TRINITY_DN1924_c0_g1	956	977	967	-25.40	-18.80	0.740157480314961	5.5	1-7,977-971;8-16,969-961;18-21,959-956	x-x,970-970[BULt];17-17,960-960[SIL]	((((.(((((((((.(((((((&)))))))-))))))))).))))	UGGACGGCAAUUUGCAAAGGAG&CUUCUUU-CAAAUUGUUUUUCA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1924_c0_g1_967_TPlot.pdf
TRINITY_DN19252_c0_g2:80	si_a407	TRINITY_DN19252_c0_g2	69	89	80	-19.80	-14.30	0.722222222222222	9	1-14,89-76	15-21,75-69[UP3]	.......((((((((((((((&)))))))))))))).......	AAAAUUUUAUAGACAAAGCAA&UUGUUUUGUUUAUAUUUAAAU	4	0.99999848013799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN19252_c0_g2_80_TPlot.pdf
TRINITY_DN19254_c0_g1:835	si_s352	TRINITY_DN19254_c0_g1	824	844	835	-27.20	-18.10	0.665441176470588	4.5	1-20,844-825	21-21,824-824[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GUCAGUUUAUUUUUUUAUUUU&GAGAUAAAGAAAUAGAUUGAA	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN19254_c0_g1_835_TPlot.pdf
TRINITY_DN1926_c0_g1:1087	si_a552	TRINITY_DN1926_c0_g1	1076	1096	1087	-33.10	-24.60	0.743202416918429	7	2-18,1095-1079	1-1,1096-1096[UP5];19-21,1078-1076[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAAGGAGAUGAAGAAGUGGAA&AUCUAUUUCUUUAUCUCCCCG	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN1926_c0_g1_1087_TPlot.pdf
TRINITY_DN1926_c0_g1:1537	si_a572	TRINITY_DN1926_c0_g1	1527	1546	1537	-30.40	-20.40	0.671052631578947	5.5	1-11,1546-1536;13-20,1535-1528	12-12,x-x[BULq];21-21,1527-1527[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	GGUUGCAAA-AUAUGAUUUAC&GUGAAUCGUAUGUUUGUAACA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN1926_c0_g1_1537_TPlot.pdf
TRINITY_DN1926_c0_g1:319	si_s63	TRINITY_DN1926_c0_g1	308	330	319	-25.80	-16.80	0.651162790697674	11	1-7,330-324;8-14,321-315	x-x,323-322[BULt];15-21,314-308[UP3]	.......(((((((..(((((((&)))))))--))))))).......	GUUAGCUUAGAAGUGUUGCUAAC&GUUAGCA--ACUUCUAUUUUUUU	3	0.999999996719684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN1926_c0_g1_319_TPlot.pdf
TRINITY_DN19279_c0_g2:1818	si_a406	TRINITY_DN19279_c0_g2	1807	1827	1818	-19.80	-13.40	0.676767676767677	10	2-16,1826-1812	1-1,1827-1827[UP5];17-21,1811-1807[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAUUAUAUAAACGGGGCAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN19279_c0_g2_1818_TPlot.pdf
TRINITY_DN19279_c0_g2:784	si_s73	TRINITY_DN19279_c0_g2	771	793	784	-24.00	-16.10	0.670833333333333	10	1-11,793-783;12-14,780-778;16-21,776-771	x-x,782-781[BULt];15-15,777-777[SIL]	((((((.(((..(((((((((((&)))))))))))--))).))))))	AAGGGAUGGACGAAAGGGAUGGA&UCUAUUUUUUU--UCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN19279_c0_g2_784_TPlot.pdf
TRINITY_DN1927_c0_g1:1236	si_s83	TRINITY_DN1927_c0_g1	1225	1245	1236	-30.90	-20.80	0.673139158576052	5	2-7,1244-1239;9-13,1237-1233;15-21,1231-1225	1-1,1245-1245[UP5];8-8,1238-1238[SIL];14-14,1232-1232[SIL]	(((((((.(((((.((((((.&.)))))).))))).)))))))	GAAGAAGUAGAAAAGAGAGAU&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1927_c0_g1_1236_TPlot.pdf
TRINITY_DN1928_c0_g1:1052	si_a787	TRINITY_DN1928_c0_g1	1040	1061	1052	-26.30	-20.90	0.79467680608365	5	2-18,1060-1044;19-21,1042-1040	1-1,1061-1061[UP5];x-x,1043-1043[BULt]	(((.(((((((((((((((((.&.)))))))))))))))))-)))	UGGAAAGAUGGAGGAAUAGAAU&CUUCUAUUUUUCUAUUUU-CCA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1928_c0_g1_1052_TPlot.pdf
TRINITY_DN19294_c1_g1:3316	si_s93	TRINITY_DN19294_c1_g1	3305	3325	3316	-34.80	-23.38	0.67183908045977	10	1-8,3325-3318;12-18,3314-3308	9-11,3317-3315[SIL];19-21,3307-3305[UP3]	...(((((((...((((((((&))))))))...)))))))...	ACCCCGAAGCUCUGAGGAAGA&UCUUCUUCUUCGCUUCGGAUU	3	0.999999999323675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN19294_c1_g1_3316_TPlot.pdf
TRINITY_DN19294_c1_g1:3322	si_s90	TRINITY_DN19294_c1_g1	3308	3340	3322	-35.30	-23.50	0.6657223796034	24	1-6,3340-3335;7-14,3325-3318;15-21,3314-3308	x-x,3334-3326[BULt];x-x,3317-3315[BULt]	(((((((...((((((((.........((((((&))))))---------))))))))---)))))))	CCGAAGCUCUGAGGAAGAGCUUGUUUGGGGAAG&CUUUCU---------UCUUCUUC---GCUUCGG	4	0.999999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN19294_c1_g1_3322_TPlot.pdf
TRINITY_DN19294_c6_g1:126	si_a191	TRINITY_DN19294_c6_g1	112	135	126	-32.00	-21.20	0.6625	14.5	3-12,133-124;13-17,120-116	1-2,135-134[UP5];x-x,123-121[BULt];18-21,115-112[UP3]	....(((((...((((((((((..&..))))))))))---)))))....	AAGGGGUGAAAUACAGGGAGAGUA&AUCUUUCCCUGU---UCACUAAUA	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN19294_c6_g1_126_TPlot.pdf
TRINITY_DN192_c0_g1:2090	si_s79	TRINITY_DN192_c0_g1	2078	2099	2090	-26.20	-17.10	0.652671755725191	5.5	1-14,2099-2086;16-17,2084-2083;18-19,2081-2080	15-15,2085-2085[SIL];x-x,2082-2082[BULt];20-21,2079-2078[UP3]	..((.((.((((((((((((((&)))))))))))))).))-))..	AUGACAGCAGGGAAAGAAGAAA&UUUUUUCUUUCCUUUCU-UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN192_c0_g1_2090_TPlot.pdf
TRINITY_DN192_c0_g1:2091	si_s78	TRINITY_DN192_c0_g1	2079	2100	2091	-26.20	-17.50	0.66793893129771	5	1-15,2100-2086;17-18,2084-2083;19-20,2081-2080	16-16,2085-2085[SIL];x-x,2082-2082[BULt];21-21,2079-2079[UP3]	.((.((.(((((((((((((((&))))))))))))))).))-)).	UGACAGCAGGGAAAGAAGAAAG&UUUUUUUCUUUCCUUUCU-UCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN192_c0_g1_2091_TPlot.pdf
TRINITY_DN192_c0_g1:2093	si_s76	TRINITY_DN192_c0_g1	2082	2102	2093	-23.60	-17.00	0.720338983050847	7.5	3-17,2100-2086;19-20,2084-2083	1-2,2102-2101[UP5];18-18,2085-2085[SIL];21-21,2082-2082[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	CAGCAGGGAAAGAAGAAAGCG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN192_c0_g1_2093_TPlot.pdf
TRINITY_DN192_c0_g1:2097	si_s72	TRINITY_DN192_c0_g1	2086	2111	2097	-24.10	-16.20	0.672199170124481	16.5	3-6,2109-2106;7-21,2100-2086	1-2,2111-2110[UP5];x-x,2105-2101[BULt]	(((((((((((((((.....((((..&..))))-----)))))))))))))))	AGGGAAAGAAGAAAGCGAAGGUAGCA&UUCUAU-----UUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN192_c0_g1_2097_TPlot.pdf
TRINITY_DN192_c0_g1:2098	si_s71	TRINITY_DN192_c0_g1	2087	2105	2098	-25.70	-18.10	0.704280155642023	8.5	1-4,2105-2102;8-21,2100-2087	5-7,2101-2101[AILq]	((((((((((((((.--((((&))))...))))))))))))))	GGGAAAGAAGAAAGC--GAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN192_c0_g1_2098_TPlot.pdf
TRINITY_DN192_c0_g1:2099	si_s70	TRINITY_DN192_c0_g1	2088	2106	2099	-25.80	-17.20	0.666666666666667	8.5	2-5,2105-2102;9-21,2100-2088	1-1,2106-2106[UP5];6-8,2101-2101[AILq]	(((((((((((((.--((((.&.))))...)))))))))))))	GGAAAGAAGAAAGC--GAAGG&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN192_c0_g1_2099_TPlot.pdf
TRINITY_DN192_c0_g1:2144	si_s807	TRINITY_DN192_c0_g1	2135	2153	2144	-28.90	-19.60	0.678200692041523	5	1-12,2153-2142;15-20,2141-2136	13-14,x-x[BULq];21-21,2135-2135[UP3]	.((((((--((((((((((((&))))))))))))..)))))).	GAAGAAA--GUAGCGAGGAUA&UAUCUUCGUUACCUUUUCUUA	2	0.999970093256655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN192_c0_g1_2144_TPlot.pdf
TRINITY_DN192_c0_g1:2145	si_s806	TRINITY_DN192_c0_g1	2136	2154	2145	-28.60	-19.60	0.685314685314685	4.5	1-13,2154-2142;16-21,2141-2136	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	AAGAAA--GUAGCGAGGAUAG&UUAUCUUCGUUACCUUUUCUU	2	0.999957624254765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN192_c0_g1_2145_TPlot.pdf
TRINITY_DN192_c0_g1:2146	si_s805	TRINITY_DN192_c0_g1	2134	2155	2146	-28.60	-19.00	0.664335664335664	7.5	2-14,2154-2142;16-20,2139-2135	1-1,2155-2155[UP5];15-15,2141-2140[AILt];21-21,2134-2134[UP3]	.(((((..(((((((((((((.&.)))))))))))))-.))))).	UGAAGAAAGUAGCGAGGAUAGC&UUUAUCUUCGUUAC-CUUUUCU	3	0.999999999908848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN192_c0_g1_2146_TPlot.pdf
TRINITY_DN192_c0_g1:2151	si_s800	TRINITY_DN192_c0_g1	2140	2161	2151	-29.70	-20.90	0.703703703703704	9.5	2-6,2160-2156;7-19,2154-2142	1-1,2161-2161[UP5];x-x,2155-2155[BULt];20-21,2141-2140[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	AAGUAGCGAGGAUAGCAGUGCA&CGUAUU-UUAUCUUCGUUACCU	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN192_c0_g1_2151_TPlot.pdf
TRINITY_DN192_c0_g1:2152	si_s799	TRINITY_DN192_c0_g1	2141	2162	2152	-30.00	-20.90	0.696666666666667	10	3-7,2160-2156;8-20,2154-2142	1-2,2162-2161[UP5];x-x,2155-2155[BULt];21-21,2141-2141[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	AGUAGCGAGGAUAGCAGUGCAG&UCGUAUU-UUAUCUUCGUUACC	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN192_c0_g1_2152_TPlot.pdf
TRINITY_DN192_c0_g1:2268	si_s73	TRINITY_DN192_c0_g1	2257	2277	2268	-24.00	-18.90	0.7875	7	1-8,2277-2270;10-18,2268-2260	9-9,2269-2269[SIL];19-21,2259-2257[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AUCGGAAAGAAGUAAAGUAGA&UCUAUUUUUUUUCUUUCCUUU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN192_c0_g1_2268_TPlot.pdf
TRINITY_DN192_c0_g1:2272	si_s69	TRINITY_DN192_c0_g1	2261	2281	2272	-23.40	-15.30	0.653846153846154	9.5	5-12,2277-2270;14-21,2268-2261	1-4,2281-2278[UP5];13-13,2269-2269[SIL]	((((((((.((((((((....&....)))))))).))))))))	GAAAGAAGUAAAGUAGACAAA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN192_c0_g1_2272_TPlot.pdf
TRINITY_DN192_c0_g1:312	si_a471	TRINITY_DN192_c0_g1	301	321	312	-21.10	-14.60	0.691943127962085	13	6-19,316-303	1-5,321-317[UP5];20-21,302-301[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAUAGCGAUAGUUACUGGAA&AAUAUGUAAUUAUUGUUAUAU	2	0.995377114934657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN192_c0_g1_312_TPlot.pdf
TRINITY_DN19303_c0_g1:2036	si_a313	TRINITY_DN19303_c0_g1	2025	2045	2036	-28.70	-18.80	0.655052264808362	10	4-14,2042-2032;16-19,2030-2027	1-3,2045-2043[UP5];15-15,2031-2031[SIL];20-21,2026-2025[UP3]	..((((.(((((((((((...&...))))))))))).))))..	CUAAUCCUGGAUGGAUCCUAU&CUUGGAUUUAUCCAUGAUUUU	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN19303_c0_g1_2036_TPlot.pdf
TRINITY_DN19303_c0_g1:2133	si_s164	TRINITY_DN19303_c0_g1	2122	2141	2133	-40.20	-27.20	0.676616915422885	5.5	1-2,2141-2140;4-16,2139-2127;18-20,2125-2123	3-3,x-x[BULq];17-17,2126-2126[SIL];21-21,2122-2122[UP3]	.(((.(((((((((((((-((&)).))))))))))))).))).	GAUCAUUAUCCCUGGCCG-GA&UCAUGGCCAGGGGUAAAGAUG	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN19303_c0_g1_2133_TPlot.pdf
TRINITY_DN19303_c0_g1:2135	si_s162	TRINITY_DN19303_c0_g1	2124	2143	2135	-40.10	-26.40	0.658354114713217	5.5	2-4,2142-2140;6-18,2139-2127;20-21,2125-2124	1-1,2143-2143[UP5];5-5,x-x[BULq];19-19,2126-2126[SIL]	((.(((((((((((((-(((.&.))).))))))))))))).))	UCAUUAUCCCUGGCCG-GAAA&GUUCAUGGCCAGGGGUAAAGA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN19303_c0_g1_2135_TPlot.pdf
TRINITY_DN19303_c0_g1:970	si_s3	TRINITY_DN19303_c0_g1	959	980	970	-21.20	-13.80	0.650943396226415	11	1-7,980-974;8-10,972-970;13-21,967-959	x-x,973-973[BULt];11-12,969-968[SIL]	(((((((((..(((.(((((((&)))))))-)))..)))))))))	GGUGGUAGUUUGUGCAUGUAGA&UUUAUAU-UACUUAUUAUUACU	3	0.999995751731662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN19303_c0_g1_970_TPlot.pdf
TRINITY_DN19303_c0_g1:971	si_s2	TRINITY_DN19303_c0_g1	960	981	971	-20.50	-13.40	0.653658536585366	9.5	1-8,981-974;9-11,972-970;14-21,967-960	x-x,973-973[BULt];12-13,969-968[SIL]	((((((((..(((.((((((((&))))))))-)))..))))))))	GUGGUAGUUUGUGCAUGUAGAA&UUUUAUAU-UACUUAUUAUUAC	2	0.999732637295738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN19303_c0_g1_971_TPlot.pdf
TRINITY_DN19306_c0_g1:195	si_s665	TRINITY_DN19306_c0_g1	184	204	195	-33.60	-23.70	0.705357142857143	5.5	1-7,204-198;9-11,196-194;13-21,192-184	8-8,197-197[SIL];12-12,193-193[SIL]	(((((((((.(((.(((((((&))))))).))).)))))))))	UCUGUGAUUCAUUAGAUCCCC&GGGGAUCGAAUUGAUUAUAGA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN19306_c0_g1_195_TPlot.pdf
TRINITY_DN19316_c0_g1:534	si_s79	TRINITY_DN19316_c0_g1	519	543	534	-26.20	-19.40	0.740458015267176	10	1-12,543-532;13-19,527-521	x-x,531-528[BULt];20-21,520-519[UP3]	..(((((((....((((((((((((&))))))))))))----)))))))..	AUGAAGAAAUGUUGGAAAGAAAAAA&UUUUUUCUUUCC----UUUCUUCUU	2	0.999999991802517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN19316_c0_g1_534_TPlot.pdf
TRINITY_DN19316_c0_g1:538	si_s75	TRINITY_DN19316_c0_g1	523	547	538	-24.00	-15.90	0.6625	10	4-16,544-532;17-21,527-523	1-3,547-545[UP5];x-x,531-528[BULt]	(((((....(((((((((((((...&...)))))))))))))----)))))	AGAAAUGUUGGAAAGAAAAAAGGAG&UAUUUUUUUUCUUUCC----UUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN19316_c0_g1_538_TPlot.pdf
TRINITY_DN19316_c0_g1:541	si_s72	TRINITY_DN19316_c0_g1	530	549	541	-24.10	-17.90	0.742738589211618	6	1-4,549-546;6-19,545-532	5-5,x-x[BULq];20-21,531-530[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	UUGGAAAGAAAAAAGG-AGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999379008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN19316_c0_g1_541_TPlot.pdf
TRINITY_DN19316_c0_g1:543	si_s70	TRINITY_DN19316_c0_g1	532	551	543	-25.80	-20.90	0.810077519379845	5	2-6,550-546;8-21,545-532	1-1,551-551[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	GGAAAGAAAAAAGG-AGAAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN19316_c0_g1_543_TPlot.pdf
TRINITY_DN19316_c0_g1:544	si_s69	TRINITY_DN19316_c0_g1	533	552	544	-23.40	-17.80	0.760683760683761	7	3-7,550-546;9-21,545-533	1-2,552-551[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAAGAAAAAAGG-AGAAGGA&AACUUCUAUUUUUUUUCUUUC	4	0.99999948044527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN19316_c0_g1_544_TPlot.pdf
TRINITY_DN19316_c0_g1:625	si_s83	TRINITY_DN19316_c0_g1	608	634	625	-30.90	-22.00	0.711974110032362	14.5	1-11,634-624;12-20,617-609	x-x,623-618[BULt];21-21,608-608[UP3]	.(((((((((......(((((((((((&)))))))))))------))))))))).	AGAGAAGAAGUUCAAAAAAGGGAAGAA&UUCUUUCCUUU------CUUCUUCUUC	4	0.999999999999106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN19316_c0_g1_625_TPlot.pdf
TRINITY_DN19317_c0_g1:46	si_a790	TRINITY_DN19317_c0_g1	35	55	46	-25.80	-16.90	0.655038759689922	8.5	3-17,53-39	1-2,55-54[UP5];18-21,38-35[UP3]	....(((((((((((((((..&..)))))))))))))))....	GCCGGGAAGAUAGGAAAAUCA&CUAUUUUUCUAUUUUCCAAUC	4	0.999999993859753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN19317_c0_g1_46_TPlot.pdf
TRINITY_DN19324_c0_g1:154	si_s84	TRINITY_DN19324_c0_g1	142	163	154	-32.30	-24.10	0.746130030959752	7	3-10,161-154;11-20,152-143	1-2,163-162[UP5];x-x,153-153[BULt];21-21,142-142[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	AGAAGAAGAAGCAGAGGAAAAU&UCUUUCCUUU-CUUCUUCUUCG	4	0.999911308480448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN19324_c0_g1_154_TPlot.pdf
TRINITY_DN19324_c0_g1:155	si_s83	TRINITY_DN19324_c0_g1	143	164	155	-30.90	-23.70	0.766990291262136	8	4-11,161-154;12-21,152-143	1-3,164-162[UP5];x-x,153-153[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	GAAGAAGAAGCAGAGGAAAAUA&UUCUUUCCUUU-CUUCUUCUUC	2	0.997456340380309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN19324_c0_g1_155_TPlot.pdf
TRINITY_DN19329_c1_g1:349	si_a410	TRINITY_DN19329_c1_g1	338	358	349	-17.80	-12.60	0.707865168539326	7.5	1-7,358-352;9-18,350-341	8-8,351-351[SIL];19-21,340-338[UP3]	...((((((((((.(((((((&))))))).))))))))))...	ACAAUUUGAAUGUUAACAAGA&UUUUGUUUAUAUUUAAAUAAA	4	0.999998012315855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN19329_c1_g1_349_TPlot.pdf
TRINITY_DN19329_c1_g1:352	si_a407	TRINITY_DN19329_c1_g1	341	361	352	-19.80	-13.00	0.656565656565657	7	2-2,360-360;4-10,358-352;12-21,350-341	1-1,361-361[UP5];3-3,359-359[SIL];11-11,351-351[SIL]	((((((((((.(((((((.(.&.).))))))).))))))))))	AUUUGAAUGUUAACAAGAGAU&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN19329_c1_g1_352_TPlot.pdf
TRINITY_DN19337_c0_g1:323	si_a224	TRINITY_DN19337_c0_g1	312	333	323	-27.40	-17.90	0.653284671532847	7	2-6,332-328;7-17,326-316;19-20,314-313	1-1,333-333[UP5];x-x,327-327[BULt];18-18,315-315[SIL];21-21,312-312[UP3]	.((.(((((((((((.(((((.&.)))))-))))))))))).)).	AGAGUAUAGAGAUAUAGAGUUA&AAACUC-AUGUUUCUAUAAUCA	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN19337_c0_g1_323_TPlot.pdf
TRINITY_DN19337_c0_g1:880	si_a788	TRINITY_DN19337_c0_g1	868	889	880	-24.80	-16.30	0.657258064516129	8	2-13,888-877;16-18,874-872;19-20,870-869	1-1,889-889[UP5];14-15,876-875[SIL];x-x,871-871[BULt];21-21,868-868[UP3]	.((.(((..((((((((((((.&.))))))))))))..)))-)).	GUGUGAAUUUAGGAAAGUGGAU&UUCUAUUUUUCUAUUUUC-CAA	2	0.999999999685592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN19337_c0_g1_880_TPlot.pdf
TRINITY_DN19338_c0_g1:1898	si_s8	TRINITY_DN19338_c0_g1	1887	1906	1898	-21.30	-13.90	0.652582159624413	11	3-9,1904-1898;11-18,1897-1890	1-2,1906-1905[UP5];10-10,x-x[BULq];19-21,1889-1887[UP3]	...((((((((-(((((((..&..))))))).))))))))...	UCGGUAGUGAU-GUGAGUAGA&AUUACUUAUUAUUACUAUAUU	3	0.999999968333721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN19338_c0_g1_1898_TPlot.pdf
TRINITY_DN1933_c0_g2:2127	si_s7	TRINITY_DN1933_c0_g2	2116	2136	2127	-21.70	-15.40	0.709677419354839	13	6-19,2131-2118	1-5,2136-2132[UP5];20-21,2117-2116[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAAUGGUGAUAGUAAGGAAAC&UAUUACUUAUUAUUACUAUAU	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN1933_c0_g2_2127_TPlot.pdf
TRINITY_DN1933_c0_g2:2211	si_a217	TRINITY_DN1933_c0_g2	2201	2220	2211	-27.00	-17.60	0.651851851851852	7.5	1-7,2220-2214;10-13,2211-2208;15-21,2207-2201	8-9,2213-2212[SIL];14-14,x-x[BULq]	(((((((-((((..(((((((&)))))))..)))).)))))))	GGAGACG-GAGUAGAAUUGGU&ACUAAUUAAACUCAUGUUUCU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a217_TRINITY_DN1933_c0_g2_2211_TPlot.pdf
TRINITY_DN19340_c0_g1:1177	si_s483	TRINITY_DN19340_c0_g1	1166	1186	1177	-21.40	-14.14	0.660747663551402	9	1-8,1186-1179;14-21,1173-1166	9-13,1178-1174[SIL]	((((((((.....((((((((&)))))))).....))))))))	UAUAUUUAUGAUUAUAUAGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN19340_c0_g1_1177_TPlot.pdf
TRINITY_DN19340_c0_g1:1245	si_s535	TRINITY_DN19340_c0_g1	1234	1254	1245	-28.60	-19.00	0.664335664335664	11.5	1-15,1254-1240	16-21,1239-1234[UP3]	......(((((((((((((((&)))))))))))))))......	UUAGUUUCGGGUCGAGGGUGG&UCAUUUUUGAUCCGAUCAAAA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN19340_c0_g1_1245_TPlot.pdf
TRINITY_DN19340_c0_g1:1246	si_s534	TRINITY_DN19340_c0_g1	1235	1255	1246	-28.80	-20.60	0.715277777777778	11	1-16,1255-1240	17-21,1239-1235[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAGUUUCGGGUCGAGGGUGGU&AUCAUUUUUGAUCCGAUCAAA	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN19340_c0_g1_1246_TPlot.pdf
TRINITY_DN19340_c0_g1:1250	si_s530	TRINITY_DN19340_c0_g1	1239	1259	1250	-29.50	-20.80	0.705084745762712	13	5-20,1255-1240	1-4,1259-1256[UP5];21-21,1239-1239[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUCGGGUCGAGGGUGGUAACU&CGAAAUCAUUUUUGAUCCGAU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN19340_c0_g1_1250_TPlot.pdf
TRINITY_DN19340_c0_g1:132	si_a829	TRINITY_DN19340_c0_g1	121	141	132	-25.70	-16.90	0.657587548638132	5	1-11,141-131;13-19,129-123	12-12,130-130[SIL];20-21,122-121[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AGUCUAUUUGUUUUCUUUUCU&AGGAAAGAAAAAAAAUAGAAG	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a829_TRINITY_DN19340_c0_g1_132_TPlot.pdf
TRINITY_DN19343_c0_g1:575	si_a764	TRINITY_DN19343_c0_g1	564	584	575	-28.90	-19.50	0.674740484429066	8.5	1-10,584-575;12-16,573-569	11-11,574-574[SIL];17-21,568-564[UP3]	.....(((((.((((((((((&)))))))))).))))).....	AAUCUUCAGUGGAAAACCCAA&UUGGGUUUUUGAUUGAUUCAA	2	0.999421598995741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN19343_c0_g1_575_TPlot.pdf
TRINITY_DN19372_c0_g1:167	si_s77	TRINITY_DN19372_c0_g1	154	176	167	-25.50	-17.70	0.694117647058824	6.5	1-11,176-166;12-14,164-162;15-21,160-154	x-x,165-165[BULt];x-x,161-161[BULt]	(((((((.(((.(((((((((((&)))))))))))-)))-)))))))	GGAGAGGUGGACAAGAAGGAAAA&UUUUUUUUCUU-UCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN19372_c0_g1_167_TPlot.pdf
TRINITY_DN19372_c0_g1:168	si_s76	TRINITY_DN19372_c0_g1	155	177	168	-23.60	-16.90	0.716101694915254	6.5	1-12,177-166;13-15,164-162;16-21,160-155	x-x,165-165[BULt];x-x,161-161[BULt]	((((((.(((.((((((((((((&))))))))))))-)))-))))))	GAGAGGUGGACAAGAAGGAAAAU&AUUUUUUUUCUU-UCC-UUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN19372_c0_g1_168_TPlot.pdf
TRINITY_DN19372_c0_g1:169	si_s75	TRINITY_DN19372_c0_g1	156	178	169	-24.00	-16.40	0.683333333333333	5.5	1-13,178-166;14-16,164-162;17-21,160-156	x-x,165-165[BULt];x-x,161-161[BULt]	(((((.(((.(((((((((((((&)))))))))))))-)))-)))))	AGAGGUGGACAAGAAGGAAAAUG&UAUUUUUUUUCUU-UCC-UUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN19372_c0_g1_169_TPlot.pdf
TRINITY_DN19372_c0_g1:221	si_a70	TRINITY_DN19372_c0_g1	210	230	221	-23.90	-16.50	0.690376569037657	7	1-8,230-223;10-18,221-213	9-9,222-222[SIL];19-21,212-210[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AAAGAAGGAUAAAUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999856505208577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN19372_c0_g1_221_TPlot.pdf
TRINITY_DN19372_c0_g1:222	si_a69	TRINITY_DN19372_c0_g1	211	231	222	-24.00	-16.90	0.704166666666667	6	1-9,231-223;11-19,221-213	10-10,222-222[SIL];20-21,212-211[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAGAAGGAUAAAUUGAAAGAG&UUCUUUCAAAUUGUUUUUCAU	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN19372_c0_g1_222_TPlot.pdf
TRINITY_DN19391_c0_g2:3137	si_a581	TRINITY_DN19391_c0_g2	3126	3146	3137	-31.30	-22.80	0.728434504792332	4	1-20,3146-3127	21-21,3126-3126[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AGUUUUUCUUGUUAUAAAUAU&AUGUUUGUAACAAGAAGGACA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a581_TRINITY_DN19391_c0_g2_3137_TPlot.pdf
TRINITY_DN1939_c0_g1:3657	si_a187	TRINITY_DN1939_c0_g1	3646	3665	3657	-32.00	-21.80	0.68125	11	4-8,3662-3658;11-21,3656-3646	1-3,3665-3663[UP5];9-10,3657-3657[AILq]	(((((((((((.-(((((...&...)))))..)))))))))))	AGUGAGCGGGGC-AGAUGGCG&UAAUAUCUUUCCCUGUUCACU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN1939_c0_g1_3657_TPlot.pdf
TRINITY_DN1939_c0_g1:615	si_a758	TRINITY_DN1939_c0_g1	602	624	615	-34.00	-25.90	0.761764705882353	5.5	1-14,624-611;15-17,609-607;19-21,604-602	x-x,610-610[BULt];18-18,606-605[AILt]	(((..(((.((((((((((((((&))))))))))))))-)))-.)))	CGAGCCAGCGAACCCAGAGGAGG&CCUCCUUUGGGUUU-UUG-AUUG	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1939_c0_g1_615_TPlot.pdf
TRINITY_DN1939_c0_g1:622	si_a751	TRINITY_DN1939_c0_g1	611	631	622	-37.20	-25.30	0.68010752688172	14	8-21,624-611	1-7,631-625[UP5]	((((((((((((((.......&.......))))))))))))))	GAACCCAGAGGAGGCCGAGAA&CCAUGAACCUCCUUUGGGUUU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN1939_c0_g1_622_TPlot.pdf
TRINITY_DN1939_c0_g1:782	si_s378	TRINITY_DN1939_c0_g1	771	793	782	-43.80	-29.78	0.679908675799087	12.5	2-8,792-786;11-18,781-774	1-1,793-793[UP5];9-10,785-782[AILt];19-21,773-771[UP3]	...((((((((....(((((((.&.)))))))--..))))))))...	ACGGAGGCGGAGAUUCGCGAGCU&CGCUCGCG--UGUCCGCCUUACA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN1939_c0_g1_782_TPlot.pdf
TRINITY_DN1939_c0_g1:892	si_s318	TRINITY_DN1939_c0_g1	880	901	892	-32.80	-26.70	0.814024390243902	4.5	1-13,901-889;14-17,887-884;20-21,881-880	x-x,888-888[BULt];18-19,883-882[SIL]	((..((((.(((((((((((((&)))))))))))))-))))..))	UGGGUGUGUACAAGGAGGACAG&CUGUCCUUCUUGU-UACAAACA	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN1939_c0_g1_892_TPlot.pdf
TRINITY_DN1939_c0_g1:893	si_s317	TRINITY_DN1939_c0_g1	881	902	893	-33.10	-26.90	0.812688821752266	4.5	1-14,902-889;15-18,887-884;21-21,881-881	x-x,888-888[BULt];19-20,883-882[SIL]	(..((((.((((((((((((((&))))))))))))))-))))..)	GGGUGUGUACAAGGAGGACAGA&UCUGUCCUUCUUGU-UACAAAC	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN1939_c0_g1_893_TPlot.pdf
TRINITY_DN1939_c0_g1:894	si_s316	TRINITY_DN1939_c0_g1	882	903	894	-31.50	-26.40	0.838095238095238	5	1-15,903-889;16-19,887-884	x-x,888-888[BULt];20-21,883-882[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	GGUGUGUACAAGGAGGACAGAG&UUCUGUCCUUCUUGU-UACAAA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN1939_c0_g1_894_TPlot.pdf
TRINITY_DN1939_c0_g1:896	si_s314	TRINITY_DN1939_c0_g1	884	905	896	-31.50	-26.20	0.831746031746032	6.5	3-17,903-889;18-21,887-884	1-2,905-904[UP5];x-x,888-888[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	UGUGUACAAGGAGGACAGAGCA&AAUUCUGUCCUUCUUGU-UACA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN1939_c0_g1_896_TPlot.pdf
TRINITY_DN1939_c0_g1:897	si_s313	TRINITY_DN1939_c0_g1	885	906	897	-30.80	-24.80	0.805194805194805	8	4-18,903-889;19-21,887-885	1-3,906-904[UP5];x-x,888-888[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	GUGUACAAGGAGGACAGAGCAG&AAAUUCUGUCCUUCUUGU-UAC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN1939_c0_g1_897_TPlot.pdf
TRINITY_DN193_c0_g1:1423	si_s797	TRINITY_DN193_c0_g1	1412	1430	1423	-30.00	-19.50	0.65	9	2-6,1429-1425;9-19,1424-1414	1-1,1430-1430[UP5];7-8,x-x[BULq];20-21,1413-1412[UP3]	..(((((((((((--(((((.&.)))))..)))))))))))..	AUACGAAGAUAGA--GCGAGA&GCUCGUAUUUUAUCUUCGUUA	3	0.999999999667001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN193_c0_g1_1423_TPlot.pdf
TRINITY_DN193_c0_g1:1428	si_a777	TRINITY_DN193_c0_g1	1416	1437	1428	-27.00	-19.60	0.725925925925926	8	2-7,1436-1431;9-11,1429-1427;12-21,1425-1416	1-1,1437-1437[UP5];8-8,1430-1430[SIL];x-x,1426-1426[BULt]	((((((((((.(((.((((((.&.)))))).)))-))))))))))	GAAGAUAGAGCGAGAUGAGUCG&UGAUUCAACUC-UUCUAUUUUU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN193_c0_g1_1428_TPlot.pdf
TRINITY_DN193_c0_g1:2670	si_s5	TRINITY_DN193_c0_g1	2660	2679	2670	-21.70	-15.90	0.732718894009217	4.5	1-15,2679-2665;17-19,2664-2662	16-16,x-x[BULq];20-21,2661-2660[UP3]	..(((-(((((((((((((((&))))))))))))))).)))..	AAAGU-AUAGUAAGUAAUAUG&UAUAUUACUUAUUAUUACUAU	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN193_c0_g1_2670_TPlot.pdf
TRINITY_DN193_c0_g1:2671	si_s4	TRINITY_DN193_c0_g1	2661	2680	2671	-21.60	-15.90	0.736111111111111	4.5	2-16,2679-2665;18-20,2664-2662	1-1,2680-2680[UP5];17-17,x-x[BULq];21-21,2661-2661[UP3]	.(((-(((((((((((((((.&.))))))))))))))).))).	AAGU-AUAGUAAGUAAUAUGU&UUAUAUUACUUAUUAUUACUA	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN193_c0_g1_2671_TPlot.pdf
TRINITY_DN193_c0_g1:2672	si_s3	TRINITY_DN193_c0_g1	2662	2681	2672	-21.20	-15.60	0.735849056603774	5.5	3-17,2679-2665;19-21,2664-2662	1-2,2681-2680[UP5];18-18,x-x[BULq]	(((-(((((((((((((((..&..))))))))))))))).)))	AGU-AUAGUAAGUAAUAUGUA&UUUAUAUUACUUAUUAUUACU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN193_c0_g1_2672_TPlot.pdf
TRINITY_DN193_c0_g1:2673	si_s2	TRINITY_DN193_c0_g1	2663	2682	2673	-20.50	-14.30	0.697560975609756	7.5	4-18,2679-2665;20-21,2664-2663	1-3,2682-2680[UP5];19-19,x-x[BULq]	((-(((((((((((((((...&...))))))))))))))).))	GU-AUAGUAAGUAAUAUGUAA&UUUUAUAUUACUUAUUAUUAC	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN193_c0_g1_2673_TPlot.pdf
TRINITY_DN193_c0_g1:2674	si_s8	TRINITY_DN193_c0_g1	2662	2683	2674	-21.30	-14.90	0.699530516431925	4.5	1-5,2683-2679;7-13,2677-2671;14-21,2669-2662	6-6,2678-2678[SIL];x-x,2670-2670[BULt]	((((((((.(((((((.(((((&))))).)))))))-))))))))	AGUAUAGUAAGUAAUAUGUAAU&AUUACUUAUUAUU-ACUAUAUU	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN193_c0_g1_2674_TPlot.pdf
TRINITY_DN19404_c0_g1:116	si_a410	TRINITY_DN19404_c0_g1	106	125	116	-17.80	-11.80	0.662921348314607	4.5	1-10,125-116;12-19,115-108	11-11,x-x[BULq];20-21,107-106[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	ACUAUUUAAA-AUAAACAAAG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999328236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN19404_c0_g1_116_TPlot.pdf
TRINITY_DN19408_c0_g1:394	si_a80	TRINITY_DN19408_c0_g1	381	403	394	-22.10	-14.80	0.669683257918552	7.5	2-15,402-389;17-20,385-382	1-1,403-403[UP5];16-16,388-386[AILt];21-21,381-381[UP3]	.((((...((((((((((((((.&.))))))))))))))--.)))).	AUUUCAACUAGUGAUGAAGAACU&UGUUUUUCAUUAUUA--AGAAAA	4	0.999997290929464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN19408_c0_g1_394_TPlot.pdf
TRINITY_DN19408_c0_g1:399	si_a75	TRINITY_DN19408_c0_g1	388	408	399	-21.30	-14.70	0.690140845070423	14	7-20,402-389	1-6,408-403[UP5];21-21,388-388[UP3]	.((((((((((((((......&......)))))))))))))).	CUAGUGAUGAAGAACUCGAGA&CAAAUUGUUUUUCAUUAUUAA	2	0.999920055731936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN19408_c0_g1_399_TPlot.pdf
TRINITY_DN19409_c0_g2:477	si_s426	TRINITY_DN19409_c0_g2	466	486	477	-23.60	-17.00	0.720338983050847	5.5	1-9,486-478;11-19,476-468	10-10,477-477[SIL];20-21,467-466[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UAGUAAUUGUUUUUGUAUAGA&UCUAUAUAACAAUAAUUACAU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN19409_c0_g2_477_TPlot.pdf
TRINITY_DN1940_c0_g1:130	si_s8	TRINITY_DN1940_c0_g1	119	139	130	-21.30	-13.90	0.652582159624413	12.5	3-15,137-125	1-2,139-138[UP5];16-21,124-119[UP3]	......(((((((((((((..&..)))))))))))))......	CGUUAUGUGAUGAUGAGUGCG&AUUACUUAUUAUUACUAUAUU	3	0.999999981292735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN1940_c0_g1_130_TPlot.pdf
TRINITY_DN1940_c0_g1:385	si_a415	TRINITY_DN1940_c0_g1	374	394	385	-18.10	-12.80	0.707182320441989	4.5	1-14,394-381;17-20,378-375	15-16,380-379[SIL];21-21,374-374[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	UUGUAGAUAUUUAAAUGUAAA&UUUAUAUUUAAAUAAAUAUAG	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN1940_c0_g1_385_TPlot.pdf
TRINITY_DN1940_c0_g1:386	si_a414	TRINITY_DN1940_c0_g1	375	395	386	-18.10	-12.50	0.69060773480663	4.5	2-15,394-381;18-21,378-375	1-1,395-395[UP5];16-17,380-379[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	UGUAGAUAUUUAAAUGUAAAA&GUUUAUAUUUAAAUAAAUAUA	2	0.991058844142749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN1940_c0_g1_386_TPlot.pdf
TRINITY_DN19412_c0_g1:32	si_s426	TRINITY_DN19412_c0_g1	21	41	32	-23.60	-16.00	0.677966101694915	6	3-7,39-35;9-21,33-21	1-2,41-40[UP5];8-8,34-34[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AUGUAAUUAUUGUAAUAUGUA&UCUAUAUAACAAUAAUUACAU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN19412_c0_g1_32_TPlot.pdf
TRINITY_DN1941_c0_g3:1417	si_s563	TRINITY_DN1941_c0_g3	1406	1426	1417	-30.80	-20.10	0.652597402597403	8	3-14,1424-1413;17-21,1410-1406	1-2,1426-1425[UP5];15-16,1412-1411[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	GUUUCGAGUCCUGAAGAUAGA&AAUAUUUUCGGGACAAGGAAU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN1941_c0_g3_1417_TPlot.pdf
TRINITY_DN1941_c0_g3:1869	si_s794	TRINITY_DN1941_c0_g3	1855	1878	1869	-31.20	-20.90	0.669871794871795	8.5	1-2,1878-1877;4-13,1875-1866;14-20,1862-1856	3-3,1876-1876[SIL];x-x,1865-1863[BULt];21-21,1855-1855[UP3]	.(((((((...((((((((((.((&)).))))))))))---))))))).	AGGAGGUGCUAAAGUACGAGCCUG&CAAGCUCGUAUUU---UAUCUUCG	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN1941_c0_g3_1869_TPlot.pdf
TRINITY_DN1941_c0_g3:1870	si_s793	TRINITY_DN1941_c0_g3	1856	1879	1870	-30.50	-20.70	0.678688524590164	8.5	2-3,1878-1877;5-14,1875-1866;15-21,1862-1856	1-1,1879-1879[UP5];4-4,1876-1876[SIL];x-x,1865-1863[BULt]	(((((((...((((((((((.((.&.)).))))))))))---)))))))	GGAGGUGCUAAAGUACGAGCCUGG&ACAAGCUCGUAUUU---UAUCUUC	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN1941_c0_g3_1870_TPlot.pdf
TRINITY_DN1941_c0_g3:1874	si_s789	TRINITY_DN1941_c0_g3	1863	1883	1874	-26.20	-17.60	0.67175572519084	12.5	6-7,1878-1877;9-20,1875-1864	1-5,1883-1879[UP5];8-8,1876-1876[SIL];21-21,1863-1863[UP3]	.((((((((((((.((.....&.....)).)))))))))))).	CUAAAGUACGAGCCUGGAACG&UAAAACAAGCUCGUAUUUUAU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN1941_c0_g3_1874_TPlot.pdf
TRINITY_DN1941_c0_g3:1875	si_s788	TRINITY_DN1941_c0_g3	1864	1884	1875	-26.20	-17.50	0.66793893129771	13.5	7-8,1878-1877;10-21,1875-1864	1-6,1884-1879[UP5];9-9,1876-1876[SIL]	((((((((((((.((......&......)).))))))))))))	UAAAGUACGAGCCUGGAACGU&AUAAAACAAGCUCGUAUUUUA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN1941_c0_g3_1875_TPlot.pdf
TRINITY_DN1941_c0_g3:1926	si_s893	TRINITY_DN1941_c0_g3	1915	1935	1926	-29.10	-19.00	0.652920962199313	8.5	1-12,1935-1924;14-17,1922-1919	13-13,1923-1923[SIL];18-21,1918-1915[UP3]	....((((.((((((((((((&)))))))))))).))))....	CAAAGGAGCGAGAGCUUGUUU&AAAUAGGCUUUCUCUUCAAUU	4	0.999999999252227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN1941_c0_g3_1926_TPlot.pdf
TRINITY_DN1941_c0_g3:2981	si_s774	TRINITY_DN1941_c0_g3	2970	2990	2981	-24.70	-17.70	0.716599190283401	8.5	3-16,2988-2975	1-2,2990-2989[UP5];17-21,2974-2970[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUGGAUGGCAAUAGUAAUGG&UAAUUACUAUUGCUAUAAAAC	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN1941_c0_g3_2981_TPlot.pdf
TRINITY_DN1941_c0_g3:3186	si_a133	TRINITY_DN1941_c0_g3	3172	3195	3186	-28.10	-18.60	0.661921708185053	10.5	2-12,3194-3184;16-21,3177-3172	1-1,3195-3195[UP5];13-15,3183-3178[AILt]	((((((......(((((((((((.&.)))))))))))---...))))))	CAAUGAGCCCAUAUUACUAUUGCC&AGCAAUAGUAAU---UAAUCGUUG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN1941_c0_g3_3186_TPlot.pdf
TRINITY_DN1941_c1_g1:614	si_s437	TRINITY_DN1941_c1_g1	603	623	614	-19.70	-13.60	0.690355329949239	13	6-19,618-605	1-5,623-619[UP5];20-21,604-603[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCAUGUGUAAUGUGUACUCUG&AUAAUUACAUAUUAUAUAUAA	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN1941_c1_g1_614_TPlot.pdf
TRINITY_DN19437_c1_g1:243	si_s5	TRINITY_DN19437_c1_g1	232	252	243	-21.70	-14.40	0.663594470046083	8.5	1-10,252-243;13-15,240-238;17-20,236-233	11-12,242-241[SIL];16-16,237-237[SIL];21-21,232-232[UP3]	.((((.(((..((((((((((&))))))))))..))).)))).	CUAGUUGUAUGAAGUAGUGUA&UAUAUUACUUAUUAUUACUAU	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN19437_c1_g1_243_TPlot.pdf
TRINITY_DN19462_c0_g1:1932	si_a448	TRINITY_DN19462_c0_g1	1921	1945	1932	-25.50	-18.70	0.733333333333333	13	1-8,1945-1938;9-19,1933-1923	x-x,1937-1934[BULt];20-21,1922-1921[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	CAGUGGCGACAAUAGGGUGUCUCAU&AUGAGAUA----AUUGUUGUUAUAU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN19462_c0_g1_1932_TPlot.pdf
TRINITY_DN19465_c0_g1:1383	si_a356	TRINITY_DN19465_c0_g1	1372	1392	1383	-26.90	-22.50	0.836431226765799	4.5	1-18,1392-1375	19-21,1374-1372[UP3]	...((((((((((((((((((&))))))))))))))))))...	AGACGAUCAAGAUAGAAUUAG&UUAAUUCUAUUUUGAUCGGAU	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN19465_c0_g1_1383_TPlot.pdf
TRINITY_DN19465_c0_g1:1389	si_a350	TRINITY_DN19465_c0_g1	1378	1398	1389	-20.30	-19.40	0.955665024630542	7.5	4-21,1395-1378	1-3,1398-1396[UP5]	((((((((((((((((((...&...))))))))))))))))))	UCAAGAUAGAAUUAGUGUGGU&AAAAUAUUAAUUCUAUUUUGA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN19465_c0_g1_1389_TPlot.pdf
TRINITY_DN1947_c0_g1:1565	si_s371	TRINITY_DN1947_c0_g1	1551	1574	1565	-43.20	-28.60	0.662037037037037	13.5	3-4,1572-1571;6-12,1569-1563;13-21,1559-1551	1-2,1574-1573[UP5];5-5,1570-1570[SIL];x-x,1562-1560[BULt]	(((((((((...(((((((.((..&..)).)))))))---)))))))))	UGGGCAUGCCUUGGGCGAUGGGAA&AACCGAUCGCUC---GCGUGUCCG	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN1947_c0_g1_1565_TPlot.pdf
TRINITY_DN1947_c0_g1:1764	si_a221	TRINITY_DN1947_c0_g1	1753	1773	1764	-25.20	-17.00	0.674603174603175	14.5	7-18,1767-1756	1-6,1773-1768[UP5];19-21,1755-1753[UP3]	...((((((((((((......&......))))))))))))...	UUUUAGAGACAUGAGAAACCA&AUUAAACUCAUGUUUCUAUAA	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN1947_c0_g1_1764_TPlot.pdf
TRINITY_DN1947_c0_g1:1765	si_a220	TRINITY_DN1947_c0_g1	1754	1774	1765	-25.10	-17.00	0.677290836653386	15.5	8-19,1767-1756	1-7,1774-1768[UP5];20-21,1755-1754[UP3]	..((((((((((((.......&.......))))))))))))..	UUUAGAGACAUGAGAAACCAU&AAUUAAACUCAUGUUUCUAUA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN1947_c0_g1_1765_TPlot.pdf
TRINITY_DN1947_c0_g2:178	si_a359	TRINITY_DN1947_c0_g2	167	188	178	-29.20	-19.72	0.675342465753425	10	2-9,187-180;13-21,175-167	1-1,188-188[UP5];10-12,179-176[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	UUGAUCCGAAGAUGAAUAGAAG&AUUCUAUUU-UGAUCGGAUCAA	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN1947_c0_g2_178_TPlot.pdf
TRINITY_DN1948_c0_g2:31	si_a784	TRINITY_DN1948_c0_g2	17	40	31	-24.70	-17.80	0.720647773279352	8.5	2-15,39-26;16-21,22-17	1-1,40-40[UP5];x-x,25-23[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	AAGAUACUCGAAGAGUGGAAGGGA&ACUCUUCUAUUUUUC---UAUUUU	2	0.999661310754408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1948_c0_g2_31_TPlot.pdf
TRINITY_DN19498_c0_g1:740	si_a627	TRINITY_DN19498_c0_g1	729	749	740	-29.50	-21.40	0.725423728813559	9	2-6,748-744;8-18,742-732	1-1,749-749[UP5];7-7,743-743[SIL];19-21,731-729[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	ACUGGAUCGGCGUAUUACGCG&GGCGUAUUAUGUCGAUUUUUU	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN19498_c0_g1_740_TPlot.pdf
TRINITY_DN1949_c0_g1:129	si_s71	TRINITY_DN1949_c0_g1	118	139	129	-25.70	-18.90	0.735408560311284	6.5	1-5,139-135;6-6,133-133;9-21,130-118	x-x,134-134[BULt];7-8,132-131[SIL]	(((((((((((((..(.(((((&)))))-)..)))))))))))))	AGGGAAGAAAAAAUUUCAGAAG&CUUCU-AUUUUUUUUCUUUCCU	2	0.999981593862286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1949_c0_g1_129_TPlot.pdf
TRINITY_DN1949_c0_g1:130	si_s70	TRINITY_DN1949_c0_g1	119	140	130	-25.80	-18.40	0.713178294573643	7.5	2-6,139-135;7-7,133-133;10-21,130-119	1-1,140-140[UP5];x-x,134-134[BULt];8-9,132-131[SIL]	((((((((((((..(.(((((.&.)))))-)..))))))))))))	GGGAAGAAAAAAUUUCAGAAGC&ACUUCU-AUUUUUUUUCUUUCC	4	0.999999998959582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1949_c0_g1_130_TPlot.pdf
TRINITY_DN19529_c0_g2:409	si_a410	TRINITY_DN19529_c0_g2	398	418	409	-17.80	-12.00	0.674157303370786	8	3-9,416-410;11-19,408-400	1-2,418-417[UP5];10-10,409-409[SIL];20-21,399-398[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	UCUGUUUGAAUUUAAACAAUG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999998939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN19529_c0_g2_409_TPlot.pdf
TRINITY_DN1952_c1_g1:969	si_a899	TRINITY_DN1952_c1_g1	958	978	969	-18.70	-13.90	0.74331550802139	4.5	3-12,976-967;14-21,965-958	1-2,978-977[UP5];13-13,966-966[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	UUUUUAUGGUACUUAUUAUGA&UAAUAAUAAGUAAUAUAAAAA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN1952_c1_g1_969_TPlot.pdf
TRINITY_DN1953_c0_g1:1232	si_s806	TRINITY_DN1953_c0_g1	1220	1241	1232	-28.60	-19.20	0.671328671328671	14	5-11,1237-1231;13-21,1228-1220	1-4,1241-1238[UP5];12-12,1230-1229[AILt]	(((((((((..(((((((....&....)))))))-.)))))))))	AGGAAGAGGAGGACGAGGUGGA&UUAUCUUCGUU-ACCUUUUCUU	4	0.999999999880904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN1953_c0_g1_1232_TPlot.pdf
TRINITY_DN1953_c0_g1:1234	si_s83	TRINITY_DN1953_c0_g1	1222	1244	1234	-30.90	-23.10	0.747572815533981	9	1-6,1244-1239;7-10,1237-1234;11-21,1232-1222	x-x,1238-1238[BULt];x-x,1233-1233[BULt]	(((((((((((.((((.((((((&))))))-))))-)))))))))))	GAAGAGGAGGACGAGGUGGAGGA&UUCUUU-CCUU-UCUUCUUCUUC	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN1953_c0_g1_1234_TPlot.pdf
TRINITY_DN19545_c0_g2:394	si_s665	TRINITY_DN19545_c0_g2	382	403	394	-33.60	-22.60	0.672619047619048	9	1-12,403-392;15-18,388-385	13-14,391-389[AILt];19-21,384-382[UP3]	...((((...((((((((((((&))))))))))))-..))))...	GGCGUGAGAGAGUUCGAUCCCC&GGGGAUCGAAUU-GAUUAUAGA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN19545_c0_g2_394_TPlot.pdf
TRINITY_DN19548_c0_g1:11026	si_s37	TRINITY_DN19548_c0_g1	11015	11035	11026	-24.40	-16.20	0.663934426229508	4.5	1-6,11035-11030;8-20,11028-11016	7-7,11029-11029[SIL];21-21,11015-11015[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UUCUAAUUAUUAAAAGUUUAG&CUAAAUCUUUAAUAAUUGGAU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN19548_c0_g1_11026_TPlot.pdf
TRINITY_DN19548_c0_g1:11027	si_s36	TRINITY_DN19548_c0_g1	11016	11036	11027	-25.00	-16.70	0.668	4.5	2-7,11035-11030;9-21,11028-11016	1-1,11036-11036[UP5];8-8,11029-11029[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UCUAAUUAUUAAAAGUUUAGC&ACUAAAUCUUUAAUAAUUGGA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN19548_c0_g1_11027_TPlot.pdf
TRINITY_DN19548_c0_g1:5192	si_s76	TRINITY_DN19548_c0_g1	5181	5201	5192	-23.60	-16.20	0.686440677966102	6.5	1-8,5201-5194;10-10,5192-5192;12-21,5190-5181	9-9,5193-5193[SIL];11-11,5191-5191[SIL]	((((((((((.(.((((((((&)))))))).).))))))))))	AAGAGAGGAGCGCAAAAAGAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN19548_c0_g1_5192_TPlot.pdf
TRINITY_DN19553_c0_g1:206	si_a665	TRINITY_DN19553_c0_g1	195	215	206	-29.60	-20.70	0.699324324324324	10	2-8,214-208;10-16,206-200	1-1,215-215[UP5];9-9,207-207[SIL];17-21,199-195[UP3]	.....(((((((.(((((((.&.))))))).))))))).....	UGCUCGGAAUCACUGGGCGUA&AAUGCCUAUUGAUUCCUUAUU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN19553_c0_g1_206_TPlot.pdf
TRINITY_DN19558_c0_g3:188	si_s585	TRINITY_DN19558_c0_g3	177	197	188	-27.00	-19.20	0.711111111111111	12	6-15,192-183;18-21,180-177	1-5,197-193[UP5];16-17,182-181[SIL]	((((..((((((((((.....&.....))))))))))..))))	UGGAGAUAUCCAUGGUAUAGA&AAAAAAUCAUGGAUAAAUCCA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN19558_c0_g3_188_TPlot.pdf
TRINITY_DN1955_c0_g1:1263	si_a500	TRINITY_DN1955_c0_g1	1251	1272	1263	-34.40	-22.50	0.654069767441861	9	2-2,1271-1271;4-16,1269-1257;17-20,1255-1252	1-1,1272-1272[UP5];3-3,1270-1270[SIL];x-x,1256-1256[BULt];21-21,1251-1251[UP3]	.((((.(((((((((((((.(.&.).)))))))))))))-)))).	ACCGGUGGAAGAUGAGAGAGGC&UCGUUUUUCGUCUUCC-UUGGA	4	0.999999999993778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN1955_c0_g1_1263_TPlot.pdf
TRINITY_DN1955_c0_g1:2394	si_s26	TRINITY_DN1955_c0_g1	2383	2403	2394	-26.70	-17.40	0.651685393258427	10.5	5-14,2399-2390;17-21,2387-2383	1-4,2403-2400[UP5];15-16,2389-2388[SIL]	(((((..((((((((((....&....))))))))))..)))))	GGAGAGCUGGUUGCAAUAUCG&AUUGAUUGCAACUAAAUCUUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN1955_c0_g1_2394_TPlot.pdf
TRINITY_DN1955_c0_g1:6082	si_a398	TRINITY_DN1955_c0_g1	6070	6091	6082	-22.40	-14.90	0.665178571428572	11.5	5-17,6087-6075;18-21,6073-6070	1-4,6091-6088[UP5];x-x,6074-6074[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	UGGAUCAAGACAGUUCUGCAGA&AAUAUAGAAUUGUUUUG-UUUA	4	0.999999997197659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN1955_c0_g1_6082_TPlot.pdf
TRINITY_DN1955_c0_g1:6641	si_s463	TRINITY_DN1955_c0_g1	6630	6651	6641	-31.90	-23.60	0.739811912225705	10	3-6,6649-6646;7-19,6644-6632	1-2,6651-6650[UP5];x-x,6645-6645[BULt];20-21,6631-6630[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	CACCGUUGGAUGUGGCGAUGUA&AUUAUC-UCAUAUCCAACGGAU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN1955_c0_g1_6641_TPlot.pdf
TRINITY_DN1955_c0_g1:6881	si_a354	TRINITY_DN1955_c0_g1	6870	6890	6881	-26.20	-17.80	0.679389312977099	6	1-9,6890-6882;11-21,6880-6870	10-10,6881-6881[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UUGAUCAGGAUUGGAUUGAUA&UAUUAAUUCUAUUUUGAUCGG	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN1955_c0_g1_6881_TPlot.pdf
TRINITY_DN1955_c0_g1:6883	si_a352	TRINITY_DN1955_c0_g1	6872	6892	6883	-22.50	-17.80	0.791111111111111	6	2-11,6891-6882;13-21,6880-6872	1-1,6892-6892[UP5];12-12,6881-6881[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	GAUCAGGAUUGGAUUGAUAUC&AAUAUUAAUUCUAUUUUGAUC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN1955_c0_g1_6883_TPlot.pdf
TRINITY_DN1955_c0_g1:8836	si_s96	TRINITY_DN1955_c0_g1	8826	8846	8836	-37.20	-24.70	0.663978494623656	6.5	1-8,8846-8839;10-14,8836-8832;16-21,8831-8826	9-9,8838-8837[AILt];15-15,x-x[BULq]	((((((-(((((..((((((((&))))))))-.))))).))))))	UCCAGU-CGAAGAGGAAGAGGA&UCUUCUUC-GCUUCGGAUUGGA	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN1955_c0_g1_8836_TPlot.pdf
TRINITY_DN1955_c0_g1:8839	si_a758	TRINITY_DN1955_c0_g1	8828	8848	8839	-34.00	-22.88	0.672941176470588	8.5	1-8,8848-8841;12-21,8837-8828	9-11,8840-8838[SIL]	((((((((((...((((((((&))))))))...))))))))))	CAGUCGAAGAGGAAGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN1955_c0_g1_8839_TPlot.pdf
TRINITY_DN1955_c0_g1:8840	si_s87	TRINITY_DN1955_c0_g1	8828	8850	8840	-32.90	-25.50	0.775075987841945	6	1-6,8850-8845;7-18,8843-8832;19-20,8830-8829	x-x,8844-8844[BULt];x-x,8831-8831[BULt];21-21,8828-8828[UP3]	.((.((((((((((((.((((((&))))))-))))))))))))-)).	CAGUCGAAGAGGAAGAGGAGGAA&UUCCUU-UCUUCUUCUUCG-CUU	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN1955_c0_g1_8840_TPlot.pdf
TRINITY_DN1955_c0_g1:8841	si_s86	TRINITY_DN1955_c0_g1	8829	8851	8841	-32.90	-25.70	0.781155015197568	5.5	2-7,8850-8845;8-19,8843-8832;20-21,8830-8829	1-1,8851-8851[UP5];x-x,8844-8844[BULt];x-x,8831-8831[BULt]	((.((((((((((((.((((((.&.))))))-))))))))))))-))	AGUCGAAGAGGAAGAGGAGGAAG&UUUCCUU-UCUUCUUCUUCG-CU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN1955_c0_g1_8841_TPlot.pdf
TRINITY_DN1955_c0_g1:8842	si_s85	TRINITY_DN1955_c0_g1	8830	8852	8842	-33.80	-25.10	0.742603550295858	6.5	2-8,8851-8845;9-20,8843-8832;21-21,8830-8830	1-1,8852-8852[UP5];x-x,8844-8844[BULt];x-x,8831-8831[BULt]	(.((((((((((((.(((((((.&.)))))))-))))))))))))-)	GUCGAAGAGGAAGAGGAGGAAGA&CUUUCCUU-UCUUCUUCUUCG-C	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN1955_c0_g1_8842_TPlot.pdf
TRINITY_DN1955_c0_g1:8843	si_s84	TRINITY_DN1955_c0_g1	8832	8852	8843	-32.30	-25.50	0.789473684210526	5.5	1-6,8852-8847;8-21,8845-8832	7-7,8846-8846[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	CGAAGAGGAAGAGGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN1955_c0_g1_8843_TPlot.pdf
TRINITY_DN1955_c0_g1:8845	si_s82	TRINITY_DN1955_c0_g1	8834	8854	8845	-28.90	-21.50	0.743944636678201	6.5	2-8,8853-8847;10-21,8845-8834	1-1,8854-8854[UP5];9-9,8846-8846[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	AAGAGGAAGAGGAGGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	2	0.99999829174949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1955_c0_g1_8845_TPlot.pdf
TRINITY_DN1955_c0_g1:8846	si_s81	TRINITY_DN1955_c0_g1	8835	8855	8846	-28.90	-22.30	0.771626297577855	6.5	1-9,8855-8847;11-21,8845-8835	10-10,8846-8846[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AGAGGAAGAGGAGGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN1955_c0_g1_8846_TPlot.pdf
TRINITY_DN1955_c0_g1:8847	si_s77	TRINITY_DN1955_c0_g1	8835	8856	8847	-25.50	-19.50	0.764705882352941	7	1-13,8856-8844;14-20,8842-8836	x-x,8843-8843[BULt];21-21,8835-8835[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	AGAGGAAGAGGAGGAAGAAGAA&UUUUUUUUCUUUC-CUUUCUUC	4	0.999999999379008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN1955_c0_g1_8847_TPlot.pdf
TRINITY_DN1955_c0_g1:8848	si_s76	TRINITY_DN1955_c0_g1	8836	8857	8848	-23.60	-19.30	0.817796610169491	6.5	2-14,8856-8844;15-21,8842-8836	1-1,8857-8857[UP5];x-x,8843-8843[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	GAGGAAGAGGAGGAAGAAGAAG&AUUUUUUUUCUUUC-CUUUCUU	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN1955_c0_g1_8848_TPlot.pdf
TRINITY_DN1955_c0_g1:8849	si_s75	TRINITY_DN1955_c0_g1	8837	8858	8849	-24.00	-18.20	0.758333333333333	8	3-15,8856-8844;16-21,8842-8837	1-2,8858-8857[UP5];x-x,8843-8843[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGGAAGAGGAGGAAGAAGAAGA&UAUUUUUUUUCUUUC-CUUUCU	4	0.999999999451348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN1955_c0_g1_8849_TPlot.pdf
TRINITY_DN1955_c0_g1:8850	si_a786	TRINITY_DN1955_c0_g1	8838	8858	8850	-26.60	-17.60	0.661654135338346	6.5	1-6,8858-8853;8-14,8852-8846;16-21,8843-8838	7-7,x-x[BULq];15-15,8845-8844[AILt]	((((((..(((((((-((((((&)))))).)))))))-.))))))	GGAAGAGGAGGAAGA-AGAAGA&UCUUCUAUUUUUCU-AUUUUCC	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1955_c0_g1_8850_TPlot.pdf
TRINITY_DN1955_c0_g1:8854	si_a496	TRINITY_DN1955_c0_g1	8843	8862	8854	-32.40	-21.10	0.651234567901235	5	1-6,8862-8857;8-13,8856-8851;15-21,8849-8843	7-7,x-x[BULq];14-14,8850-8850[SIL]	(((((((.((((((-((((((&)))))).)))))).)))))))	AGGAGGAAGAAGAA-GACAUG&UAUGUCGUUUUUCGUCUUCCU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN1955_c0_g1_8854_TPlot.pdf
TRINITY_DN1955_c0_g1:8855	si_a324	TRINITY_DN1955_c0_g1	8844	8863	8855	-27.50	-18.30	0.665454545454546	6.5	1-5,8863-8859;7-13,8858-8852;15-20,8850-8845	6-6,x-x[BULq];14-14,8851-8851[SIL];21-21,8844-8844[UP3]	.((((((.(((((((-(((((&))))).))))))).)))))).	GGAGGAAGAAGAAGA-CAUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.999982117446275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN1955_c0_g1_8855_TPlot.pdf
TRINITY_DN1956_c0_g1:255	si_s523	TRINITY_DN1956_c0_g1	244	264	255	-24.50	-16.60	0.677551020408163	5	2-5,263-260;7-19,258-246	1-1,264-264[UP5];6-6,259-259[SIL];20-21,245-244[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UCAAAAUGAUUUCGAUUUAAU&CUUAAUUCGAAAUCAUUUUUG	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN1956_c0_g1_255_TPlot.pdf
TRINITY_DN1957_c0_g1:432	si_a613	TRINITY_DN1957_c0_g1	419	440	432	-35.30	-23.70	0.671388101983003	7.5	1-6,440-435;8-14,434-428;15-19,425-421	7-7,x-x[BULq];x-x,427-426[BULt];20-21,420-419[UP3]	..(((((..(((((((-((((((&)))))).)))))))--)))))..	UAACGCCGGUGGUCGG-UGGAAU&AUUCCAAUCGACUA--GGCGUAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN1957_c0_g1_432_TPlot.pdf
TRINITY_DN1957_c0_g1:433	si_a612	TRINITY_DN1957_c0_g1	420	441	433	-35.10	-24.00	0.683760683760684	7.5	2-7,440-435;9-15,434-428;16-20,425-421	1-1,441-441[UP5];8-8,x-x[BULq];x-x,427-426[BULt];21-21,420-420[UP3]	.(((((..(((((((-((((((.&.)))))).)))))))--))))).	AACGCCGGUGGUCGG-UGGAAUG&AAUUCCAAUCGACUA--GGCGUA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN1957_c0_g1_433_TPlot.pdf
TRINITY_DN1957_c0_g1:434	si_a611	TRINITY_DN1957_c0_g1	421	442	434	-36.40	-23.70	0.651098901098901	8.5	3-8,440-435;10-16,434-428;17-21,425-421	1-2,442-441[UP5];9-9,x-x[BULq];x-x,427-426[BULt]	(((((..(((((((-((((((..&..)))))).)))))))--)))))	ACGCCGGUGGUCGG-UGGAAUGC&CAAUUCCAAUCGACUA--GGCGU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN1957_c0_g1_434_TPlot.pdf
TRINITY_DN1957_c0_g1:435	si_a610	TRINITY_DN1957_c0_g1	422	442	435	-38.10	-24.90	0.653543307086614	7.5	1-3,442-440;5-9,439-435;11-17,434-428;18-21,425-422	4-4,x-x[BULq];10-10,x-x[BULq];x-x,427-426[BULt]	((((..(((((((-(((((-(((&))).))))).)))))))--))))	CGCCGGUGGUCGG-UGGAA-UGC&GCAAUUCCAAUCGACUA--GGCG	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a610_TRINITY_DN1957_c0_g1_435_TPlot.pdf
TRINITY_DN1957_c0_g1:907	si_a17	TRINITY_DN1957_c0_g1	896	919	907	-24.30	-16.14	0.664197530864198	13.5	3-7,917-913;9-20,908-897	1-2,919-918[UP5];8-8,912-909[AILt];21-21,896-896[UP3]	.((((((((((((....(((((..&..)))))---.)))))))))))).	UGCUGAAGAUAAAAUCAAGGCUGU&AAAGCCU---AUUUAUUUUUAGUU	3	0.999999959626296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN1957_c0_g1_907_TPlot.pdf
TRINITY_DN1957_c0_g1:924	si_a117	TRINITY_DN1957_c0_g1	913	933	924	-31.00	-20.50	0.661290322580645	10.5	1-4,933-930;6-9,928-925;11-19,923-915	5-5,929-929[SIL];10-10,924-924[SIL];20-21,914-913[UP3]	..(((((((((.((((.((((&)))).)))).)))))))))..	AGGCUGUAGGAGGAGCAUGUG&UACGAGCUUGUUUUAUAGCAA	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN1957_c0_g1_924_TPlot.pdf
TRINITY_DN1957_c0_g1:925	si_a116	TRINITY_DN1957_c0_g1	914	934	925	-31.10	-21.80	0.70096463022508	9.5	1-5,934-930;7-10,928-925;12-20,923-915	6-6,929-929[SIL];11-11,924-924[SIL];21-21,914-914[UP3]	.(((((((((.((((.(((((&))))).)))).))))))))).	GGCUGUAGGAGGAGCAUGUGU&AUACGAGCUUGUUUUAUAGCA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN1957_c0_g1_925_TPlot.pdf
TRINITY_DN1957_c0_g1:926	si_a115	TRINITY_DN1957_c0_g1	915	935	926	-30.40	-22.30	0.733552631578947	8.5	1-6,935-930;8-11,928-925;13-21,923-915	7-7,929-929[SIL];12-12,924-924[SIL]	(((((((((.((((.((((((&)))))).)))).)))))))))	GCUGUAGGAGGAGCAUGUGUU&AAUACGAGCUUGUUUUAUAGC	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN1957_c0_g1_926_TPlot.pdf
TRINITY_DN1957_c0_g1:927	si_a114	TRINITY_DN1957_c0_g1	916	936	927	-27.90	-19.90	0.71326164874552	7.5	1-7,936-930;9-12,928-925;14-21,923-916	8-8,929-929[SIL];13-13,924-924[SIL]	((((((((.((((.(((((((&))))))).)))).))))))))	CUGUAGGAGGAGCAUGUGUUU&AAAUACGAGCUUGUUUUAUAG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN1957_c0_g1_927_TPlot.pdf
TRINITY_DN1957_c0_g1:928	si_a113	TRINITY_DN1957_c0_g1	917	937	928	-26.20	-18.10	0.690839694656489	7	1-8,937-930;10-13,928-925;15-21,923-917	9-9,929-929[SIL];14-14,924-924[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	UGUAGGAGGAGCAUGUGUUUU&AAAAUACGAGCUUGUUUUAUA	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN1957_c0_g1_928_TPlot.pdf
TRINITY_DN1957_c0_g1:930	si_a111	TRINITY_DN1957_c0_g1	919	939	930	-26.20	-17.70	0.675572519083969	7.5	1-10,939-930;12-15,928-925;17-21,923-919	11-11,929-929[SIL];16-16,924-924[SIL]	(((((.((((.((((((((((&)))))))))).)))).)))))	UAGGAGGAGCAUGUGUUUUGU&AUAAAAUACGAGCUUGUUUUA	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN1957_c0_g1_930_TPlot.pdf
TRINITY_DN1957_c0_g1:931	si_a110	TRINITY_DN1957_c0_g1	920	940	931	-27.80	-20.10	0.723021582733813	7.5	1-11,940-930;13-16,928-925;18-21,923-920	12-12,929-929[SIL];17-17,924-924[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	AGGAGGAGCAUGUGUUUUGUC&GAUAAAAUACGAGCUUGUUUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN1957_c0_g1_931_TPlot.pdf
TRINITY_DN1957_c0_g1:932	si_a109	TRINITY_DN1957_c0_g1	921	941	932	-28.50	-19.60	0.687719298245614	7.5	2-12,940-930;14-17,928-925;19-21,923-921	1-1,941-941[UP5];13-13,929-929[SIL];18-18,924-924[SIL]	(((.((((.(((((((((((.&.))))))))))).)))).)))	GGAGGAGCAUGUGUUUUGUCA&AGAUAAAAUACGAGCUUGUUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN1957_c0_g1_932_TPlot.pdf
TRINITY_DN1957_c0_g1:933	si_a108	TRINITY_DN1957_c0_g1	922	942	933	-28.50	-19.30	0.67719298245614	8.5	3-13,940-930;15-18,928-925;20-21,923-922	1-2,942-941[UP5];14-14,929-929[SIL];19-19,924-924[SIL]	((.((((.(((((((((((..&..))))))))))).)))).))	GAGGAGCAUGUGUUUUGUCAG&AAGAUAAAAUACGAGCUUGUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN1957_c0_g1_933_TPlot.pdf
TRINITY_DN1957_c0_g1:936	si_a105	TRINITY_DN1957_c0_g1	925	945	936	-30.30	-20.30	0.66996699669967	7.5	1-3,945-943;6-16,940-930;18-21,928-925	4-5,942-941[SIL];17-17,929-929[SIL]	((((.(((((((((((..(((&)))..))))))))))).))))	GAGCAUGUGUUUUGUCAGCGU&ACGAAGAUAAAAUACGAGCUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a105_TRINITY_DN1957_c0_g1_936_TPlot.pdf
TRINITY_DN1958_c0_g1:4556	si_a782	TRINITY_DN1958_c0_g1	4541	4565	4556	-26.40	-18.60	0.704545454545455	10	3-15,4563-4551;16-21,4546-4541	1-2,4565-4564[UP5];x-x,4550-4547[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	GAUAGAAUAAGAAAUGGGAGAGUCA&CAACUCUUCUAUUUU----UCUAUU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN1958_c0_g1_4556_TPlot.pdf
TRINITY_DN1958_c0_g1:4739	si_s807	TRINITY_DN1958_c0_g1	4728	4751	4739	-28.90	-20.50	0.709342560553633	10.5	1-5,4751-4747;6-8,4743-4741;10-20,4739-4729	x-x,4746-4744[BULt];9-9,4740-4740[SIL];21-21,4728-4728[UP3]	.(((((((((((.(((...(((((&)))))---))).))))))))))).	GGAGAGAGGGUAUCGAUAGAGAUA&UAUCU---UCGUUACCUUUUCUUA	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN1958_c0_g1_4739_TPlot.pdf
TRINITY_DN1958_c0_g1:4778	si_s82	TRINITY_DN1958_c0_g1	4767	4790	4778	-28.90	-19.32	0.668512110726644	15.5	3-9,4788-4782;12-20,4776-4768	1-2,4790-4789[UP5];10-11,4781-4777[AILt];21-21,4767-4767[UP3]	.(((((((((.....(((((((..&..)))))))---..))))))))).	UAGAGGAAGAUCUAUGGGAAGAUC&UUUCUUUCC---UUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN1958_c0_g1_4778_TPlot.pdf
TRINITY_DN1958_c0_g1:4793	si_a789	TRINITY_DN1958_c0_g1	4780	4802	4793	-24.80	-18.20	0.733870967741935	9.5	1-11,4802-4792;12-18,4789-4783	x-x,4791-4790[BULt];19-21,4782-4780[UP3]	...(((((((..(((((((((((&)))))))))))--)))))))...	AUGGGAAGAUCGAGAGAAAUGGA&UCUAUUUUUCU--AUUUUCCAAU	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1958_c0_g1_4793_TPlot.pdf
TRINITY_DN1958_c0_g1:4795	si_a787	TRINITY_DN1958_c0_g1	4782	4804	4795	-26.30	-19.00	0.722433460076046	7.5	2-13,4803-4792;14-20,4789-4783	1-1,4804-4804[UP5];x-x,4791-4790[BULt];21-21,4782-4782[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	GGGAAGAUCGAGAGAAAUGGAGA&CUUCUAUUUUUCU--AUUUUCCA	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1958_c0_g1_4795_TPlot.pdf
TRINITY_DN1958_c0_g1:4796	si_a786	TRINITY_DN1958_c0_g1	4783	4805	4796	-26.60	-18.60	0.699248120300752	8.5	3-14,4803-4792;15-21,4789-4783	1-2,4805-4804[UP5];x-x,4791-4790[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	GGAAGAUCGAGAGAAAUGGAGAC&UCUUCUAUUUUUCU--AUUUUCC	4	0.999999896158245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1958_c0_g1_4796_TPlot.pdf
TRINITY_DN1958_c0_g1:4899	si_a453	TRINITY_DN1958_c0_g1	4888	4910	4899	-21.10	-14.10	0.66824644549763	11	2-9,4909-4902;10-19,4899-4890	1-1,4910-4910[UP5];x-x,4901-4900[BULt];20-21,4889-4888[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	AAUAUGUGUAGCUUGGCAAUUAA&AUAAUUGUU--GUUAUAUAUAAU	2	0.999939956558842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN1958_c0_g1_4899_TPlot.pdf
TRINITY_DN1958_c0_g1:7092	si_s3	TRINITY_DN1958_c0_g1	7082	7101	7092	-21.20	-14.00	0.660377358490566	6	3-14,7099-7088;17-21,7086-7082	1-2,7101-7100[UP5];15-16,7087-7087[AILq]	(((((.-((((((((((((..&..))))))))))))..)))))	AGUGAC-GUAAGUAAUAUAUA&UUUAUAUUACUUAUUAUUACU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN1958_c0_g1_7092_TPlot.pdf
TRINITY_DN1958_c0_g1:765	si_a321	TRINITY_DN1958_c0_g1	754	774	765	-26.70	-17.50	0.655430711610487	6	2-5,773-770;7-16,768-759;18-21,757-754	1-1,774-774[UP5];6-6,769-769[SIL];17-17,758-758[SIL]	((((.((((((((((.((((.&.)))).)))))))))).))))	GGGACAAAGAAAUCGAGGAUC&UAUCCAUGAUUUUUUUAUUCC	4	0.999995733740282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN1958_c0_g1_765_TPlot.pdf
TRINITY_DN195_c0_g1:1626	si_s63	TRINITY_DN195_c0_g1	1615	1638	1626	-25.80	-18.00	0.697674418604651	11	1-8,1638-1631;9-19,1627-1617	x-x,1630-1628[BULt];20-21,1616-1615[UP3]	..(((((((((((...((((((((&))))))))---)))))))))))..	AUGGAGAUAGAAGAAAUUGCUGAU&GUUAGCAA---CUUCUAUUUUUUU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN195_c0_g1_1626_TPlot.pdf
TRINITY_DN195_c0_g1:1631	si_s61	TRINITY_DN195_c0_g1	1617	1640	1631	-26.50	-19.10	0.720754716981132	10.5	2-10,1639-1631;11-21,1627-1617	1-1,1640-1640[UP5];x-x,1630-1628[BULt]	(((((((((((...(((((((((.&.)))))))))---)))))))))))	GGAGAUAGAAGAAAUUGCUGAUUA&AAGUUAGCAA---CUUCUAUUUUU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN195_c0_g1_1631_TPlot.pdf
TRINITY_DN195_c0_g1:517	si_s449	TRINITY_DN195_c0_g1	506	526	517	-23.60	-15.50	0.656779661016949	5.5	1-5,526-522;7-15,520-512;18-21,509-506	6-6,521-521[SIL];16-17,511-510[SIL]	((((..(((((((((.(((((&))))).)))))))))..))))	AGGUUUUUGUUGUUGAAUAUA&UAUAUAUAACAACAAUUAUCU	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN195_c0_g1_517_TPlot.pdf
TRINITY_DN19600_c0_g1:1426	si_a493	TRINITY_DN19600_c0_g1	1416	1435	1426	-29.50	-19.20	0.650847457627119	7.5	1-13,1435-1423;16-20,1421-1417	14-15,1422-1422[AILq];21-21,1416-1416[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	UAGGCGU-GGAUGACAUGUUU&GAAUAUGUCGUUUUUCGUCUU	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN19600_c0_g1_1426_TPlot.pdf
TRINITY_DN19600_c0_g1:2528	si_a318	TRINITY_DN19600_c0_g1	2517	2537	2528	-22.50	-15.50	0.688888888888889	10.5	1-13,2537-2525	14-21,2524-2517[UP3]	........(((((((((((((&)))))))))))))........	AACGUUGUGUCAUGGGUAGAU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999993062352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN19600_c0_g1_2528_TPlot.pdf
TRINITY_DN19600_c0_g1:2531	si_a315	TRINITY_DN19600_c0_g1	2520	2540	2531	-27.00	-23.40	0.866666666666667	7.5	1-16,2540-2525	17-21,2524-2520[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUUGUGUCAUGGGUAGAUCCA&UGGAUUUAUCCAUGAUUUUUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN19600_c0_g1_2531_TPlot.pdf
TRINITY_DN19600_c0_g1:2532	si_a314	TRINITY_DN19600_c0_g1	2521	2541	2532	-27.10	-23.60	0.870848708487085	7.5	2-17,2540-2525	1-1,2541-2541[UP5];18-21,2524-2521[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUGUGUCAUGGGUAGAUCCAU&UUGGAUUUAUCCAUGAUUUUU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN19600_c0_g1_2532_TPlot.pdf
TRINITY_DN19600_c0_g1:2539	si_a307	TRINITY_DN19600_c0_g1	2528	2551	2539	-33.00	-23.30	0.706060606060606	9.5	1-5,2551-2547;7-8,2545-2544;9-21,2540-2528	6-6,2546-2546[SIL];x-x,2543-2541[BULt]	(((((((((((((...((.(((((&))))).))---)))))))))))))	AUGGGUAGAUCCAUUCAGGGAAUU&GAUUCGCU---UGGAUUUAUCCAU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN19600_c0_g1_2539_TPlot.pdf
TRINITY_DN19600_c0_g1:3179	si_s548	TRINITY_DN19600_c0_g1	3168	3187	3179	-22.50	-16.90	0.751111111111111	7	1-4,3187-3184;7-19,3182-3170	5-6,3183-3183[AILq];20-21,3169-3168[UP3]	..(((((((((((((.-((((&))))..)))))))))))))..	UCUGUUAGUUCUAUUG-GAUC&GAUCAAAAUAGAAUUAAUAUU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN19600_c0_g1_3179_TPlot.pdf
TRINITY_DN19600_c0_g1:3180	si_s547	TRINITY_DN19600_c0_g1	3169	3188	3180	-24.00	-19.30	0.804166666666667	6	1-5,3188-3184;8-20,3182-3170	6-7,3183-3183[AILq];21-21,3169-3169[UP3]	.(((((((((((((.-(((((&)))))..))))))))))))).	CUGUUAGUUCUAUUG-GAUCG&CGAUCAAAAUAGAAUUAAUAU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN19600_c0_g1_3180_TPlot.pdf
TRINITY_DN19600_c0_g1:3183	si_s544	TRINITY_DN19600_c0_g1	3172	3191	3183	-26.90	-19.10	0.71003717472119	7.5	3-8,3189-3184;11-21,3182-3172	1-2,3191-3190[UP5];9-10,3183-3183[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	UUAGUUCUAUUG-GAUCGGCU&AUCCGAUCAAAAUAGAAUUAA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN19600_c0_g1_3183_TPlot.pdf
TRINITY_DN19606_c1_g1:69	si_s796	TRINITY_DN19606_c1_g1	57	78	69	-30.30	-21.40	0.706270627062706	7	2-12,77-67;14-18,64-60;20-21,58-57	1-1,78-78[UP5];13-13,66-65[AILt];19-19,59-59[SIL]	((.(((((..(((((((((((.&.)))))))))))-.))))).))	GAGGGAGAACAGAAUACGAGCA&AGCUCGUAUUUU-AUCUUCGUU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN19606_c1_g1_69_TPlot.pdf
TRINITY_DN1960_c0_g1:1634	si_s390	TRINITY_DN1960_c0_g1	1623	1644	1634	-37.00	-24.70	0.667567567567568	8	1-5,1644-1640;6-18,1638-1626	x-x,1639-1639[BULt];19-21,1625-1623[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	ACAUUUUUGGAGUGUGAAGGCG&CGCCU-UACAUUCCAAGGAAGA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s390_TRINITY_DN1960_c0_g1_1634_TPlot.pdf
TRINITY_DN19614_c0_g2:170	si_s114	TRINITY_DN19614_c0_g2	159	180	170	-26.60	-17.50	0.657894736842105	7	1-4,180-177;6-13,174-167;16-20,164-160	5-5,176-175[AILt];14-15,166-165[SIL];21-21,159-159[UP3]	.(((((..((((((((..((((&))))-.))))))))..))))).	ACUUCUUGUUUUCUAUGGUUCC&GGAA-AAUAGAAAAAUAGAAGA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s114_TRINITY_DN19614_c0_g2_170_TPlot.pdf
TRINITY_DN19614_c0_g3:1866	si_s898	TRINITY_DN19614_c0_g3	1856	1875	1866	-30.70	-21.50	0.700325732899023	7.5	1-13,1875-1863;17-19,1860-1858	14-16,1862-1861[AILq];20-21,1857-1856[UP3]	..(((..-(((((((((((((&)))))))))))))...)))..	GCUGGUG-UGAAGGGAAGGCC&GGCUUUCUCUUCAAUUUCAAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN19614_c0_g3_1866_TPlot.pdf
TRINITY_DN19614_c0_g3:1867	si_s897	TRINITY_DN19614_c0_g3	1857	1876	1867	-31.30	-21.50	0.686900958466454	7.5	2-14,1875-1863;18-20,1860-1858	1-1,1876-1876[UP5];15-17,1862-1861[AILq];21-21,1857-1857[UP3]	.(((..-(((((((((((((.&.)))))))))))))...))).	CUGGUG-UGAAGGGAAGGCCG&AGGCUUUCUCUUCAAUUUCAA	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN19614_c0_g3_1867_TPlot.pdf
TRINITY_DN19614_c0_g3:1869	si_s895	TRINITY_DN19614_c0_g3	1858	1878	1869	-31.10	-21.40	0.688102893890675	12	4-16,1875-1863	1-3,1878-1876[UP5];17-21,1862-1858[UP3]	.....(((((((((((((...&...))))))))))))).....	UGGUGUGAAGGGAAGGCCGGA&AUAGGCUUUCUCUUCAAUUUC	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN19614_c0_g3_1869_TPlot.pdf
TRINITY_DN19614_c0_g3:1870	si_s894	TRINITY_DN19614_c0_g3	1859	1879	1870	-29.10	-21.40	0.735395189003436	13	5-17,1875-1863	1-4,1879-1876[UP5];18-21,1862-1859[UP3]	....(((((((((((((....&....)))))))))))))....	GGUGUGAAGGGAAGGCCGGAA&AAUAGGCUUUCUCUUCAAUUU	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN19614_c0_g3_1870_TPlot.pdf
TRINITY_DN19614_c0_g3:1871	si_s893	TRINITY_DN19614_c0_g3	1860	1880	1871	-29.10	-21.40	0.735395189003436	13.5	6-18,1875-1863	1-5,1880-1876[UP5];19-21,1862-1860[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUGUGAAGGGAAGGCCGGAAG&AAAUAGGCUUUCUCUUCAAUU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN19614_c0_g3_1871_TPlot.pdf
TRINITY_DN19614_c0_g3:1872	si_s892	TRINITY_DN19614_c0_g3	1861	1881	1872	-29.50	-21.40	0.725423728813559	14.5	7-19,1875-1863	1-6,1881-1876[UP5];20-21,1862-1861[UP3]	..(((((((((((((......&......)))))))))))))..	UGUGAAGGGAAGGCCGGAAGG&UAAAUAGGCUUUCUCUUCAAU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN19614_c0_g3_1872_TPlot.pdf
TRINITY_DN19614_c0_g3:1873	si_s891	TRINITY_DN19614_c0_g3	1862	1882	1873	-29.60	-21.40	0.722972972972973	15.5	8-20,1875-1863	1-7,1882-1876[UP5];21-21,1862-1862[UP3]	.(((((((((((((.......&.......))))))))))))).	GUGAAGGGAAGGCCGGAAGGA&AUAAAUAGGCUUUCUCUUCAA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN19614_c0_g3_1873_TPlot.pdf
TRINITY_DN19614_c0_g3:1875	si_s889	TRINITY_DN19614_c0_g3	1864	1884	1875	-28.80	-19.80	0.6875	18	10-21,1875-1864	1-9,1884-1876[UP5]	((((((((((((.........&.........))))))))))))	GAAGGGAAGGCCGGAAGGAUC&AAAUAAAUAGGCUUUCUCUUC	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN19614_c0_g3_1875_TPlot.pdf
TRINITY_DN19614_c0_g3:2070	si_a403	TRINITY_DN19614_c0_g3	2059	2079	2070	-22.00	-14.50	0.659090909090909	11.5	1-13,2079-2067	14-21,2066-2059[UP3]	........(((((((((((((&)))))))))))))........	CAACCAAUGCAGAACGGUUCU&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN19614_c0_g3_2070_TPlot.pdf
TRINITY_DN19614_c0_g3:2071	si_a402	TRINITY_DN19614_c0_g3	2060	2080	2071	-22.40	-15.30	0.683035714285714	11	1-14,2080-2067	15-21,2066-2060[UP3]	.......((((((((((((((&)))))))))))))).......	AACCAAUGCAGAACGGUUCUG&UAGAAUUGUUUUGUUUAUAUU	4	0.999999932685302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN19614_c0_g3_2071_TPlot.pdf
TRINITY_DN19614_c0_g3:2072	si_a401	TRINITY_DN19614_c0_g3	2061	2081	2072	-22.60	-16.90	0.747787610619469	10.5	1-15,2081-2067	16-21,2066-2061[UP3]	......(((((((((((((((&)))))))))))))))......	ACCAAUGCAGAACGGUUCUGU&AUAGAAUUGUUUUGUUUAUAU	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN19614_c0_g3_2072_TPlot.pdf
TRINITY_DN19614_c0_g3:2073	si_a400	TRINITY_DN19614_c0_g3	2062	2082	2073	-22.80	-18.00	0.789473684210526	9	1-16,2082-2067	17-21,2066-2062[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCAAUGCAGAACGGUUCUGUA&UAUAGAAUUGUUUUGUUUAUA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN19614_c0_g3_2073_TPlot.pdf
TRINITY_DN19614_c0_g3:2075	si_a398	TRINITY_DN19614_c0_g3	2064	2084	2075	-22.40	-19.20	0.857142857142857	8	2-18,2083-2067	1-1,2084-2084[UP5];19-21,2066-2064[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAUGCAGAACGGUUCUGUAUC&AAUAUAGAAUUGUUUUGUUUA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN19614_c0_g3_2075_TPlot.pdf
TRINITY_DN19614_c0_g3:2076	si_a397	TRINITY_DN19614_c0_g3	2065	2085	2076	-24.00	-19.20	0.8	9	3-19,2083-2067	1-2,2085-2084[UP5];20-21,2066-2065[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUGCAGAACGGUUCUGUAUCG&GAAUAUAGAAUUGUUUUGUUU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN19614_c0_g3_2076_TPlot.pdf
TRINITY_DN19614_c0_g3:2079	si_a394	TRINITY_DN19614_c0_g3	2068	2088	2079	-24.30	-17.80	0.732510288065844	11.5	6-21,2083-2068	1-5,2088-2084[UP5]	((((((((((((((((.....&.....))))))))))))))))	CAGAACGGUUCUGUAUCGAUA&UAAGAAUAUAGAAUUGUUUUG	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN19614_c0_g3_2079_TPlot.pdf
TRINITY_DN19614_c0_g3:2131	si_a873	TRINITY_DN19614_c0_g3	2120	2139	2131	-27.00	-19.10	0.707407407407407	7.5	1-7,2139-2133;10-19,2131-2122	8-9,2132-2132[AILq];20-21,2121-2120[UP3]	..((((((((((.-(((((((&)))))))..))))))))))..	GAGGUUGCAGCUC-AUCUUUA&UAAAGAUUUAGUUGCAAUCAA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN19614_c0_g3_2131_TPlot.pdf
TRINITY_DN19614_c0_g3:2133	si_a871	TRINITY_DN19614_c0_g3	2122	2141	2133	-26.40	-18.70	0.708333333333333	8	3-9,2139-2133;12-21,2131-2122	1-2,2141-2140[UP5];10-11,2132-2132[AILq]	((((((((((.-(((((((..&..)))))))..))))))))))	GGUUGCAGCUC-AUCUUUACA&AUUAAAGAUUUAGUUGCAAUC	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN19614_c0_g3_2133_TPlot.pdf
TRINITY_DN19614_c0_g3:2685	si_a393	TRINITY_DN19614_c0_g3	2669	2694	2685	-22.70	-15.40	0.6784140969163	9	1-13,2694-2682;14-21,2676-2669	x-x,2681-2677[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	AAAGCGAUGUUUUUCUAUGUUUUUGA&UUAAGAAUAUAGA-----AUUGUUUU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN19614_c0_g3_2685_TPlot.pdf
TRINITY_DN19614_c0_g3:886	si_s93	TRINITY_DN19614_c0_g3	874	897	886	-34.80	-22.90	0.658045977011494	10	2-5,896-893;6-17,890-879;18-20,877-875	1-1,897-897[UP5];x-x,892-891[BULt];x-x,878-878[BULt];21-21,874-874[UP3]	.(((.((((((((((((..((((.&.))))--))))))))))))-))).	CGUCACGGAGCGAAGGAUUGGAGU&UCUUC--UUCUUCGCUUCG-GAUU	4	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN19614_c0_g3_886_TPlot.pdf
TRINITY_DN19617_c0_g1:174	si_a185	TRINITY_DN19617_c0_g1	163	182	174	-31.70	-21.00	0.662460567823344	6.5	1-7,182-176;9-18,175-166	8-8,x-x[BULq];19-21,165-163[UP3]	...((((((((((-(((((((&))))))).))))))))))...	AAUACAGGGAGAG-UAUUAUU&GAUAAUAUCUUUCCCUGUUCA	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN19617_c0_g1_174_TPlot.pdf
TRINITY_DN19618_c0_g1:1802	si_a614	TRINITY_DN19618_c0_g1	1792	1810	1802	-35.20	-22.90	0.650568181818182	7.5	1-9,1810-1802;11-12,1801-1800;14-18,1799-1795	10-10,x-x[BULq];13-13,x-x[BULq];19-21,1794-1792[UP3]	...(((((-((-(((((((((&))))))))).)).)))))...	UACGCGCC-AG-CGAUUGGGA&UUCCAAUCGACUAGGCGUAUU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a614_TRINITY_DN19618_c0_g1_1802_TPlot.pdf
TRINITY_DN19619_c0_g1:142	si_a721	TRINITY_DN19619_c0_g1	131	151	142	-35.10	-23.80	0.678062678062678	7	1-4,151-148;6-16,146-136;18-19,134-133	5-5,147-147[SIL];17-17,135-135[SIL];20-21,132-131[UP3]	..((.(((((((((((.((((&)))).))))))))))).))..	CUGGCGCCCGAGUAACUGUUG&UAAUCGUUACUCGGGCAUCUU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN19619_c0_g1_142_TPlot.pdf
TRINITY_DN19619_c0_g2:179	si_s692	TRINITY_DN19619_c0_g2	168	189	179	-24.20	-15.90	0.65702479338843	9	3-7,187-183;8-19,181-170	1-2,189-188[UP5];x-x,182-182[BULt];20-21,169-168[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	AUUAAAUCGACUGACUUAGAAU&AGUUUAA-UUAGUCGAUUUAUU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN19619_c0_g2_179_TPlot.pdf
TRINITY_DN19619_c0_g2:180	si_s691	TRINITY_DN19619_c0_g2	169	191	180	-26.20	-17.60	0.67175572519084	8	1-6,191-186;7-8,184-183;9-20,181-170	x-x,185-185[BULt];x-x,182-182[BULt];21-21,169-169[UP3]	.((((((((((((.((.((((((&))))))-))-)))))))))))).	UUAAAUCGACUGACUUAGAAUUC&GAGUUU-AA-UUAGUCGAUUUAU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN19619_c0_g2_180_TPlot.pdf
TRINITY_DN19619_c0_g3:419	si_a308	TRINITY_DN19619_c0_g3	407	428	419	-32.70	-21.68	0.662996941896024	11.5	1-11,428-418;17-21,411-407	12-16,417-412[AILt]	(((((......(((((((((((&)))))))))))-.....)))))	CGUGGCAGUCUUCCGGGCGGAU&AUUCGCUUGGA-UUUAUCCAUG	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN19619_c0_g3_419_TPlot.pdf
TRINITY_DN1961_c0_g1:778	si_s93	TRINITY_DN1961_c0_g1	766	787	778	-34.80	-24.70	0.709770114942529	6	1-14,787-774;15-16,772-771;18-21,769-766	x-x,773-773[BULt];17-17,770-770[SIL]	((((.((.((((((((((((((&))))))))))))))-)).))))	AGUCGGAUGGUGGAGAAGGAGA&UCUUCUUCUUCGCU-UCGGAUU	2	0.994565220670309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN1961_c0_g1_778_TPlot.pdf
TRINITY_DN1962_c0_g2:2255	si_s312	TRINITY_DN1962_c0_g2	2244	2266	2255	-29.00	-19.20	0.662068965517241	9.5	3-9,2264-2258;10-17,2255-2248;19-20,2246-2245	1-2,2266-2265[UP5];x-x,2257-2256[BULt];18-18,2247-2247[SIL];21-21,2244-2244[UP3]	.((.((((((((..(((((((..&..)))))))--)))))))).)).	AGAGAAGAAGGAUUCAGAAUUAA&AAAAUUCUG--UCCUUCUUGUUA	3	0.999999999991969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1962_c0_g2_2255_TPlot.pdf
TRINITY_DN19631_c0_g1:117	si_s489	TRINITY_DN19631_c0_g1	106	126	117	-17.90	-12.40	0.692737430167598	12	6-19,121-108	1-5,126-122[UP5];20-21,107-106[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAUGUUUAUAUUUGAAAGAUC&AUUUAUUUAAAUAUAAACAAA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN19631_c0_g1_117_TPlot.pdf
TRINITY_DN19640_c0_g1:1763	si_s70	TRINITY_DN19640_c0_g1	1752	1770	1763	-25.80	-19.90	0.771317829457364	5	1-6,1770-1765;9-21,1764-1752	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	GGGAAGAAGAAAA--AGAAGU&ACUUCUAUUUUUUUUCUUUCC	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN19640_c0_g1_1763_TPlot.pdf
TRINITY_DN1965_c0_g1:1077	si_a506	TRINITY_DN1965_c0_g1	1066	1086	1077	-33.40	-22.60	0.676646706586826	12.5	4-10,1083-1077;13-19,1074-1068	1-3,1086-1084[UP5];11-12,1076-1075[SIL];20-21,1067-1066[UP3]	..(((((((..(((((((...&...)))))))..)))))))..	GGACGUUCCUUGGAAGGCUAC&UUCGUCUUCCUUGGAAUGUAA	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN1965_c0_g1_1077_TPlot.pdf
TRINITY_DN1965_c0_g1:1398	si_a380	TRINITY_DN1965_c0_g1	1384	1408	1398	-24.00	-15.90	0.6625	10	1-8,1408-1401;9-12,1399-1396;13-21,1392-1384	x-x,1400-1400[BULt];x-x,1395-1393[BULt]	(((((((((...((((.((((((((&))))))))-))))---)))))))))	AUUCUUGGUCUAUCGAUGAUCAUUU&AAAUGAUU-UCGA---AUUAAGAAU	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN1965_c0_g1_1398_TPlot.pdf
TRINITY_DN1965_c0_g1:1545	si_a175	TRINITY_DN1965_c0_g1	1534	1560	1545	-33.40	-21.80	0.652694610778443	16.5	1-9,1560-1552;10-18,1545-1537	x-x,1551-1546[BULt];19-21,1536-1534[UP3]	...(((((((((......(((((((((&)))))))))------)))))))))...	UUCGUAUUAUCUCCAUGCAGAUGGGUG&CACCCGUCU------AGAUAAUAUCUU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN1965_c0_g1_1545_TPlot.pdf
TRINITY_DN1965_c0_g1:213	si_a354	TRINITY_DN1965_c0_g1	201	222	213	-26.20	-17.30	0.66030534351145	13.5	7-18,216-205;19-21,203-201	1-6,222-217[UP5];x-x,204-204[BULt]	(((.((((((((((((......&......))))))))))))-)))	CCGCAUCAAGGUAGAAAAGUUU&UAUUAAUUCUAUUUUGAU-CGG	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN1965_c0_g1_213_TPlot.pdf
TRINITY_DN1965_c0_g1:2417	si_a352	TRINITY_DN1965_c0_g1	2404	2426	2417	-22.50	-15.30	0.68	7.5	1-11,2426-2416;12-20,2413-2405	x-x,2415-2414[BULt];21-21,2404-2404[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	UGUCAAAAUAUUGGAUUAAUGUU&AAUAUUAAUUC--UAUUUUGAUC	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN1965_c0_g1_2417_TPlot.pdf
TRINITY_DN1965_c0_g1:2418	si_a351	TRINITY_DN1965_c0_g1	2405	2427	2418	-20.50	-15.50	0.75609756097561	7.5	2-12,2426-2416;13-21,2413-2405	1-1,2427-2427[UP5];x-x,2415-2414[BULt]	(((((((((..(((((((((((.&.)))))))))))--)))))))))	GUCAAAAUAUUGGAUUAAUGUUA&AAAUAUUAAUUC--UAUUUUGAU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN1965_c0_g1_2418_TPlot.pdf
TRINITY_DN1965_c0_g1:2419	si_a350	TRINITY_DN1965_c0_g1	2406	2428	2419	-20.30	-14.20	0.699507389162561	7	3-13,2426-2416;14-21,2413-2406	1-2,2428-2427[UP5];x-x,2415-2414[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	UCAAAAUAUUGGAUUAAUGUUAU&AAAAUAUUAAUUC--UAUUUUGA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1965_c0_g1_2419_TPlot.pdf
TRINITY_DN1966_c0_g1:1528	si_s440	TRINITY_DN1966_c0_g1	1517	1539	1528	-21.60	-14.20	0.657407407407407	9.5	3-9,1537-1531;11-21,1527-1517	1-2,1539-1538[UP5];10-10,1530-1528[AILt]	(((((((((((...(((((((..&..)))))))--.)))))))))))	UUGUUGUAUAUUUUAUAUGUAUU&AUUACAUAU--UAUAUAUAACAA	2	0.992006333570158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN1966_c0_g1_1528_TPlot.pdf
TRINITY_DN19680_c0_g2:1160	si_s521	TRINITY_DN19680_c0_g2	1149	1169	1160	-23.90	-16.50	0.690376569037657	7	1-3,1169-1167;5-10,1165-1160;12-21,1158-1149	4-4,1166-1166[SIL];11-11,1159-1159[SIL]	((((((((((.((((((.(((&))).)))))).))))))))))	AAAAUGAUUUGGGGUUGUGAA&UUCUUAAUUCGAAAUCAUUUU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN19680_c0_g2_1160_TPlot.pdf
TRINITY_DN19680_c0_g2:1161	si_s520	TRINITY_DN19680_c0_g2	1150	1170	1161	-24.00	-15.60	0.65	8	2-4,1169-1167;6-11,1165-1160;13-21,1158-1150	1-1,1170-1170[UP5];5-5,1166-1166[SIL];12-12,1159-1159[SIL]	(((((((((.((((((.(((.&.))).)))))).)))))))))	AAAUGAUUUGGGGUUGUGAAA&AUUCUUAAUUCGAAAUCAUUU	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN19680_c0_g2_1161_TPlot.pdf
TRINITY_DN19681_c0_g1:117	si_a70	TRINITY_DN19681_c0_g1	106	126	117	-23.90	-15.90	0.665271966527197	9	3-20,124-107	1-2,126-125[UP5];21-21,106-106[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UAUGGAGAAUGAUUUGGGAAG&UCUUUCAAAUUGUUUUUCAUU	0	0.446421156304094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN19681_c0_g1_117_TPlot.pdf
TRINITY_DN1968_c0_g1:381	si_s697	TRINITY_DN1968_c0_g1	370	390	381	-26.90	-18.00	0.669144981412639	11.5	5-8,386-383;10-21,381-370	1-4,390-387[UP5];9-9,382-382[SIL]	((((((((((((.((((....&....)))).))))))))))))	UUACUGAUGGAUGGACUUUCU&AAUUAGUCGAUUUAUUAGUGA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN1968_c0_g1_381_TPlot.pdf
TRINITY_DN19691_c0_g1:693	si_a405	TRINITY_DN19691_c0_g1	682	702	693	-19.80	-13.00	0.656565656565657	11.5	3-15,700-688	1-2,702-701[UP5];16-21,687-682[UP3]	......(((((((((((((..&..)))))))))))))......	AGUUGGAUGAGCGAAACAAAA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN19691_c0_g1_693_TPlot.pdf
TRINITY_DN19691_c0_g1:813	si_s772	TRINITY_DN19691_c0_g1	802	821	813	-23.20	-15.30	0.65948275862069	6	1-7,821-815;9-17,814-806	8-8,x-x[BULq];18-21,805-802[UP3]	....(((((((((-(((((((&))))))).)))))))))....	GUAUUAGCAAUAG-AAUUAAU&AUUAAUUACUAUUGCUAUAAA	2	0.999854708090646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN19691_c0_g1_813_TPlot.pdf
TRINITY_DN19693_c3_g1:1332	si_a501	TRINITY_DN19693_c3_g1	1321	1341	1332	-33.50	-22.96	0.685373134328358	11	1-8,1341-1334;13-20,1329-1322	9-12,1333-1330[SIL];21-21,1321-1321[UP3]	.((((((((....((((((((&))))))))....)))))))).	CUCCAAGGAUUUGGGAGAACG&CGUUUUUCGUCUUCCUUGGAA	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN19693_c3_g1_1332_TPlot.pdf
TRINITY_DN19693_c3_g1:1517	si_a501	TRINITY_DN19693_c3_g1	1501	1526	1517	-33.50	-23.50	0.701492537313433	13	2-10,1525-1517;11-19,1511-1503	1-1,1526-1526[UP5];x-x,1516-1512[BULt];20-21,1502-1501[UP3]	..(((((((((.....(((((((((.&.)))))))))-----)))))))))..	CACCAAGGAAGCCAAAACGAAAAACC&CGUUUUUCGU-----CUUCCUUGGAA	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN19693_c3_g1_1517_TPlot.pdf
TRINITY_DN19693_c3_g1:1519	si_a499	TRINITY_DN19693_c3_g1	1503	1528	1519	-35.20	-23.50	0.667613636363636	15	4-12,1525-1517;13-21,1511-1503	1-3,1528-1526[UP5];x-x,1516-1512[BULt]	(((((((((.....(((((((((...&...)))))))))-----)))))))))	CCAAGGAAGCCAAAACGAAAAACCUA&GUCGUUUUUCGU-----CUUCCUUGG	2	0.999998510318831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN19693_c3_g1_1519_TPlot.pdf
TRINITY_DN1969_c0_g1:175	si_a109	TRINITY_DN1969_c0_g1	163	184	175	-28.50	-18.90	0.663157894736842	8	1-11,184-174;13-14,172-171;15-20,169-164	12-12,173-173[SIL];x-x,170-170[BULt];21-21,163-163[UP3]	.((((((.((.(((((((((((&))))))))))).))-)))))).	CAGCAGGUCUGGUGUUUUGUUU&AGAUAAAAUACGAG-CUUGUUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN1969_c0_g1_175_TPlot.pdf
TRINITY_DN1969_c0_g1:2732	si_a440	TRINITY_DN1969_c0_g1	2722	2741	2732	-30.80	-20.30	0.659090909090909	6	1-10,2741-2732;12-14,2731-2729;16-20,2727-2723	11-11,x-x[BULq];15-15,2728-2728[SIL];21-21,2722-2722[UP3]	.(((((.(((-((((((((((&)))))))))).))).))))).	CCAAUUUUCU-GUAUCCAGCG&CGUUGGAUAUGAGAUAAUUGU	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN1969_c0_g1_2732_TPlot.pdf
TRINITY_DN196_c0_g2:1396	si_s551	TRINITY_DN196_c0_g2	1386	1405	1396	-21.30	-14.10	0.661971830985915	4.5	1-11,1405-1395;14-21,1393-1386	12-13,1394-1394[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	GAGAAUAUC-AUUUUAUUUUG&CAAAAUAGAAUUAAUAUUUUC	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN196_c0_g2_1396_TPlot.pdf
TRINITY_DN196_c0_g2:549	si_a403	TRINITY_DN196_c0_g2	538	558	549	-22.00	-15.10	0.686363636363636	8	1-15,558-544	16-21,543-538[UP3]	......(((((((((((((((&)))))))))))))))......	GGGACGGAGCAAAACAAUUUU&AGAAUUGUUUUGUUUAUAUUU	4	0.9999999868209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN196_c0_g2_549_TPlot.pdf
TRINITY_DN19708_c0_g1:1043	si_a471	TRINITY_DN19708_c0_g1	1032	1052	1043	-21.10	-14.80	0.701421800947867	8.5	1-13,1052-1040;15-18,1038-1035	14-14,1039-1039[SIL];19-21,1034-1032[UP3]	...((((.(((((((((((((&))))))))))))).))))...	UUUUGGCUGUGAUUGCAUGUU&AAUAUGUAAUUAUUGUUAUAU	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN19708_c0_g1_1043_TPlot.pdf
TRINITY_DN19708_c0_g1:78	si_a407	TRINITY_DN19708_c0_g1	67	87	78	-19.80	-13.40	0.676767676767677	9.5	1-13,87-75	14-21,74-67[UP3]	........(((((((((((((&)))))))))))))........	UUCUCGUAGUAAACAAAGCAA&UUGUUUUGUUUAUAUUUAAAU	2	0.999999999384285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN19708_c0_g1_78_TPlot.pdf
TRINITY_DN19708_c2_g1:103	si_s695	TRINITY_DN19708_c2_g1	92	112	103	-24.70	-16.80	0.680161943319838	15	8-21,105-92	1-7,112-106[UP5]	((((((((((((((.......&.......))))))))))))))	GCUAAUAAGUCGAUGGUCUCC&UUAAUUAGUCGAUUUAUUAGU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN19708_c2_g1_103_TPlot.pdf
TRINITY_DN19708_c2_g1:148	si_a547	TRINITY_DN19708_c2_g1	137	159	148	-26.90	-17.60	0.654275092936803	9.5	1-7,159-153;9-21,149-137	8-8,152-150[AILt]	(((((((((((((...(((((((&)))))))--.)))))))))))))	AGGUAGAGGGAUGAAUAUUGAAC&GUUCAAU--CUAUUUCUUUAUCU	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN19708_c2_g1_148_TPlot.pdf
TRINITY_DN1970_c0_g1:271	si_s312	TRINITY_DN1970_c0_g1	259	280	271	-29.00	-19.20	0.662068965517241	10	2-3,279-278;6-15,275-266;16-20,264-260	1-1,280-280[UP5];4-5,277-276[SIL];x-x,265-265[BULt];21-21,259-259[UP3]	.(((((.((((((((((..((.&.))..))))))))))-))))).	GAGCGGUGAGGGGCAGAUGUUG&AAAAUUCUGUCCUUC-UUGUUA	4	0.999999999994615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN1970_c0_g1_271_TPlot.pdf
TRINITY_DN1970_c0_g1:967	si_s79	TRINITY_DN1970_c0_g1	956	976	967	-26.20	-19.90	0.759541984732824	7	3-16,974-961;18-19,959-958	1-2,976-975[UP5];17-17,960-960[SIL];20-21,957-956[UP3]	..((.((((((((((((((..&..)))))))))))))).))..	GCGACGAAAGGAAAGAAGAUC&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999917865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1970_c0_g1_967_TPlot.pdf
TRINITY_DN19724_c0_g1:2456	si_s837	TRINITY_DN19724_c0_g1	2444	2465	2456	-30.20	-19.70	0.652317880794702	11	3-10,2463-2456;12-18,2453-2447	1-2,2465-2464[UP5];11-11,2455-2454[AILt];19-21,2446-2444[UP3]	...(((((((..((((((((..&..))))))))-.)))))))...	AAACGCUUCUGAUCAAGUUGGU&AACAAUUUGA-AAGAAGCGAGU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s837_TRINITY_DN19724_c0_g1_2456_TPlot.pdf
TRINITY_DN19724_c0_g1:2457	si_s836	TRINITY_DN19724_c0_g1	2445	2466	2457	-29.40	-19.70	0.670068027210884	12	4-11,2463-2456;13-19,2453-2447	1-3,2466-2464[UP5];12-12,2455-2454[AILt];20-21,2446-2445[UP3]	..(((((((..((((((((...&...))))))))-.)))))))..	AACGCUUCUGAUCAAGUUGGUA&AAACAAUUUGA-AAGAAGCGAG	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s836_TRINITY_DN19724_c0_g1_2457_TPlot.pdf
TRINITY_DN19734_c0_g1:1056	si_a71	TRINITY_DN19734_c0_g1	1046	1065	1056	-23.30	-15.90	0.682403433476395	6.5	1-13,1065-1053;16-19,1051-1048	14-15,1052-1052[AILq];20-21,1047-1046[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	UCAUGGC-AACAGUUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999964960652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN19734_c0_g1_1056_TPlot.pdf
TRINITY_DN19734_c0_g1:1057	si_a70	TRINITY_DN19734_c0_g1	1047	1066	1057	-23.90	-16.10	0.673640167364017	6	1-14,1066-1053;17-20,1051-1048	15-16,1052-1052[AILq];21-21,1047-1047[UP3]	.((((.-((((((((((((((&))))))))))))))..)))).	CAUGGC-AACAGUUUGAGAGG&UCUUUCAAAUUGUUUUUCAUU	3	0.999999998351858	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN19734_c0_g1_1057_TPlot.pdf
TRINITY_DN19734_c0_g1:1058	si_a69	TRINITY_DN19734_c0_g1	1048	1067	1058	-24.00	-16.50	0.6875	6.5	2-15,1066-1053;18-21,1051-1048	1-1,1067-1067[UP5];16-17,1052-1052[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	AUGGC-AACAGUUUGAGAGGG&UUCUUUCAAAUUGUUUUUCAU	3	0.999999925894147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN19734_c0_g1_1058_TPlot.pdf
TRINITY_DN19734_c0_g1:1337	si_s447	TRINITY_DN19734_c0_g1	1322	1346	1337	-21.10	-14.60	0.691943127962085	14.5	3-10,1344-1337;11-21,1332-1322	1-2,1346-1345[UP5];x-x,1336-1333[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	AUGAUUGUUGUGUUCUGUAUGUGCA&AUUAUAUAUA----ACAACAAUUAU	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN19734_c0_g1_1337_TPlot.pdf
TRINITY_DN19734_c0_g1:1342	si_a478	TRINITY_DN19734_c0_g1	1331	1352	1342	-21.30	-14.20	0.666666666666667	13.5	5-9,1348-1344;10-21,1342-1331	1-4,1352-1349[UP5];x-x,1343-1343[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	GUGUUCUGUAUGUGCAGUUAAG&AAUUAUUGU-UAUAUAGAAUAU	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN19734_c0_g1_1342_TPlot.pdf
TRINITY_DN19734_c0_g1:623	si_a405	TRINITY_DN19734_c0_g1	613	632	623	-19.80	-13.70	0.691919191919192	7	1-14,632-619;16-19,618-615	15-15,x-x[BULq];20-21,614-613[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	AGGAAU-UGGACAAGACGAUU&AAUUGUUUUGUUUAUAUUUAA	2	0.999999997154028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN19734_c0_g1_623_TPlot.pdf
TRINITY_DN19734_c0_g1:624	si_a404	TRINITY_DN19734_c0_g1	614	633	624	-21.70	-15.30	0.705069124423963	6	1-15,633-619;17-20,618-615	16-16,x-x[BULq];21-21,614-614[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	GGAAU-UGGACAAGACGAUUU&GAAUUGUUUUGUUUAUAUUUA	3	0.999999625720291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN19734_c0_g1_624_TPlot.pdf
TRINITY_DN19734_c0_g1:625	si_a403	TRINITY_DN19734_c0_g1	615	634	625	-22.00	-15.10	0.686363636363636	6.5	2-16,633-619;18-21,618-615	1-1,634-634[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	GAAU-UGGACAAGACGAUUUA&AGAAUUGUUUUGUUUAUAUUU	2	0.999988530050541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN19734_c0_g1_625_TPlot.pdf
TRINITY_DN19734_c0_g1:626	si_a402	TRINITY_DN19734_c0_g1	615	635	626	-22.40	-14.80	0.660714285714286	11	3-17,633-619	1-2,635-634[UP5];18-21,618-615[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAAUUGGACAAGACGAUUUAC&UAGAAUUGUUUUGUUUAUAUU	2	0.999999937663356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN19734_c0_g1_626_TPlot.pdf
TRINITY_DN19734_c0_g1:627	si_a401	TRINITY_DN19734_c0_g1	616	636	627	-22.60	-14.80	0.654867256637168	12	4-18,633-619	1-3,636-634[UP5];19-21,618-616[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAUUGGACAAGACGAUUUACA&AUAGAAUUGUUUUGUUUAUAU	2	0.999999962578053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN19734_c0_g1_627_TPlot.pdf
TRINITY_DN19734_c0_g1:760	si_a71	TRINITY_DN19734_c0_g1	749	769	760	-23.30	-16.10	0.690987124463519	8.5	1-6,769-764;8-8,762-762;10-20,760-750	7-7,763-763[SIL];9-9,761-761[SIL];21-21,749-749[UP3]	.(((((((((((.(.((((((&)))))).).))))))))))).	GAAUGAAAGGCAUUAUGGAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999804179221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN19734_c0_g1_760_TPlot.pdf
TRINITY_DN19734_c0_g1:761	si_a70	TRINITY_DN19734_c0_g1	750	770	761	-23.90	-17.10	0.715481171548117	7	1-7,770-764;9-9,762-762;11-21,760-750	8-8,763-763[SIL];10-10,761-761[SIL]	(((((((((((.(.(((((((&))))))).).)))))))))))	AAUGAAAGGCAUUAUGGAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN19734_c0_g1_761_TPlot.pdf
TRINITY_DN19734_c0_g1:762	si_a69	TRINITY_DN19734_c0_g1	751	771	762	-24.00	-16.30	0.679166666666667	8	2-8,770-764;10-10,762-762;12-21,760-751	1-1,771-771[UP5];9-9,763-763[SIL];11-11,761-761[SIL]	((((((((((.(.(((((((.&.))))))).).))))))))))	AUGAAAGGCAUUAUGGAGGAC&UUCUUUCAAAUUGUUUUUCAU	3	0.999999990789199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN19734_c0_g1_762_TPlot.pdf
TRINITY_DN1973_c0_g1:509	si_s433	TRINITY_DN1973_c0_g1	498	518	509	-21.10	-15.00	0.710900473933649	5.5	2-8,517-511;10-16,509-503;18-21,501-498	1-1,518-518[UP5];9-9,510-510[SIL];17-17,502-502[SIL]	((((.(((((((.(((((((.&.))))))).))))))).))))	GUAUUGUGUGUAUUUAUUGUA&AACAAUAAUUACAUAUUAUAU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN1973_c0_g1_509_TPlot.pdf
TRINITY_DN19748_c0_g1:165	si_s88	TRINITY_DN19748_c0_g1	153	176	165	-34.80	-23.80	0.683908045977012	7.5	1-4,176-173;5-17,170-158;18-19,156-155	x-x,172-171[BULt];x-x,157-157[BULt];20-21,154-153[UP3]	..((.(((((((((((((..((((&))))--)))))))))))))-))..	AUGGUCGAAGAAGAAGAAACAGGA&UCCU--UUCUUCUUCUUCG-CUUC	2	0.999999708257402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN19748_c0_g1_165_TPlot.pdf
TRINITY_DN19748_c0_g1:166	si_s87	TRINITY_DN19748_c0_g1	154	177	166	-32.90	-24.70	0.750759878419453	6.5	1-5,177-173;6-18,170-158;19-20,156-155	x-x,172-171[BULt];x-x,157-157[BULt];21-21,154-154[UP3]	.((.(((((((((((((..(((((&)))))--)))))))))))))-)).	UGGUCGAAGAAGAAGAAACAGGAA&UUCCU--UUCUUCUUCUUCG-CUU	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN19748_c0_g1_166_TPlot.pdf
TRINITY_DN19748_c0_g1:167	si_s86	TRINITY_DN19748_c0_g1	155	178	167	-32.90	-25.10	0.762917933130699	6	1-6,178-173;7-19,170-158;20-21,156-155	x-x,172-171[BULt];x-x,157-157[BULt]	((.(((((((((((((..((((((&))))))--)))))))))))))-))	GGUCGAAGAAGAAGAAACAGGAAG&UUUCCU--UUCUUCUUCUUCG-CU	2	0.974879224210294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN19748_c0_g1_167_TPlot.pdf
TRINITY_DN19748_c0_g1:168	si_s85	TRINITY_DN19748_c0_g1	156	179	168	-33.80	-24.20	0.715976331360947	7	2-7,178-173;8-20,170-158;21-21,156-156	1-1,179-179[UP5];x-x,172-171[BULt];x-x,157-157[BULt]	(.(((((((((((((..((((((.&.))))))--)))))))))))))-)	GUCGAAGAAGAAGAAACAGGAAGU&CUUUCCU--UUCUUCUUCUUCG-C	3	0.999997589863607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN19748_c0_g1_168_TPlot.pdf
TRINITY_DN19748_c0_g1:169	si_s84	TRINITY_DN19748_c0_g1	158	180	169	-32.30	-24.10	0.746130030959752	8	3-8,178-173;9-21,170-158	1-2,180-179[UP5];x-x,172-171[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	CGAAGAAGAAGAAACAGGAAGUA&UCUUUCCU--UUCUUCUUCUUCG	2	0.996116359839343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN19748_c0_g1_169_TPlot.pdf
TRINITY_DN19748_c0_g1:170	si_s83	TRINITY_DN19748_c0_g1	159	181	170	-30.90	-22.30	0.72168284789644	10	4-9,178-173;10-21,170-159	1-3,181-179[UP5];x-x,172-171[BULt]	((((((((((((..((((((...&...))))))--))))))))))))	GAAGAAGAAGAAACAGGAAGUAU&UUCUUUCCU--UUCUUCUUCUUC	2	0.999999170064157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN19748_c0_g1_170_TPlot.pdf
TRINITY_DN19748_c0_g1:173	si_s82	TRINITY_DN19748_c0_g1	160	182	173	-28.90	-19.00	0.657439446366782	12	5-10,178-173;11-21,170-160	1-4,182-179[UP5];x-x,172-171[BULt]	(((((((((((..((((((....&....))))))--)))))))))))	AAGAAGAAGAAACAGGAAGUAUU&UUUCUUUCCU--UUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN19748_c0_g1_173_TPlot.pdf
TRINITY_DN19748_c0_g1:231	si_a77	TRINITY_DN19748_c0_g1	220	240	231	-22.20	-15.00	0.675675675675676	8.5	1-16,240-225	17-21,224-220[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUCAUAUGAUGGAAGACGAUU&AAUUGUUUUUCAUUAUUAAGA	2	0.999729288865422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN19748_c0_g1_231_TPlot.pdf
TRINITY_DN19748_c0_g1:232	si_a76	TRINITY_DN19748_c0_g1	221	241	232	-21.20	-15.90	0.75	7.5	1-17,241-225	18-21,224-221[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCAUAUGAUGGAAGACGAUUU&AAAUUGUUUUUCAUUAUUAAG	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN19748_c0_g1_232_TPlot.pdf
TRINITY_DN19748_c0_g1:234	si_a74	TRINITY_DN19748_c0_g1	223	243	234	-22.20	-16.00	0.720720720720721	8	3-19,241-225	1-2,243-242[UP5];20-21,224-223[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUAUGAUGGAAGACGAUUUUU&UCAAAUUGUUUUUCAUUAUUA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN19748_c0_g1_234_TPlot.pdf
TRINITY_DN19748_c0_g1:235	si_a73	TRINITY_DN19748_c0_g1	224	244	235	-21.90	-16.00	0.730593607305936	9	4-20,241-225	1-3,244-242[UP5];21-21,224-224[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAUGAUGGAAGACGAUUUUUG&UUCAAAUUGUUUUUCAUUAUU	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN19748_c0_g1_235_TPlot.pdf
TRINITY_DN19748_c0_g1:236	si_a72	TRINITY_DN19748_c0_g1	225	245	236	-21.90	-16.00	0.730593607305936	10	5-21,241-225	1-4,245-242[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUGAUGGAAGACGAUUUUUGG&UUUCAAAUUGUUUUUCAUUAU	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN19748_c0_g1_236_TPlot.pdf
TRINITY_DN1974_c0_g1:651	si_s68	TRINITY_DN1974_c0_g1	640	661	651	-23.10	-16.10	0.696969696969697	8.5	1-8,661-654;10-18,651-643	9-9,653-652[AILt];19-21,642-640[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	AAUGAAGAAAGACAAGAAGUUG&CAACUUCU-AUUUUUUUUCUUU	2	0.999999901204017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1974_c0_g1_651_TPlot.pdf
TRINITY_DN1975_c0_g1:2437	si_s341	TRINITY_DN1975_c0_g1	2426	2446	2437	-36.80	-24.00	0.652173913043478	6.5	2-17,2445-2430;19-21,2428-2426	1-1,2446-2446[UP5];18-18,2429-2429[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	UCUCUAUUUUCCUGUGGGUCU&CGAUUCACGGGGAGAUAAAGA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s341_TRINITY_DN1975_c0_g1_2437_TPlot.pdf
TRINITY_DN1975_c0_g1:2890	si_s111	TRINITY_DN1975_c0_g1	2879	2904	2890	-24.80	-16.50	0.665322580645161	10	1-4,2904-2901;5-9,2899-2895;10-21,2890-2879	x-x,2900-2900[BULt];x-x,2894-2891[BULt]	((((((((((((....(((((.((((&))))-)))))----))))))))))))	UCUAUUUUUCUAAUUUUUUUCUCAAU&AUUG-GAAAA----UAGAAAAAUAGA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN1975_c0_g1_2890_TPlot.pdf
TRINITY_DN1975_c0_g1:571	si_a857	TRINITY_DN1975_c0_g1	560	580	571	-25.50	-16.80	0.658823529411765	7	1-10,580-571;12-17,569-564	11-11,570-570[SIL];18-21,563-560[UP3]	....((((((.((((((((((&)))))))))).))))))....	GUCCAAUAAUAGGAUUUCAGG&CUUGAAAUCCAAUUAUUAAAG	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a857_TRINITY_DN1975_c0_g1_571_TPlot.pdf
TRINITY_DN1975_c0_g1:7561	si_a350	TRINITY_DN1975_c0_g1	7552	7570	7561	-20.30	-14.30	0.704433497536946	3	1-14,7570-7557;17-21,7556-7552	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	UCAAG--GGAAUUAAUAUUUU&AAAAUAUUAAUUCUAUUUUGA	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN1975_c0_g1_7561_TPlot.pdf
TRINITY_DN1975_c0_g2:3348	si_a472	TRINITY_DN1975_c0_g2	3336	3357	3348	-21.50	-14.20	0.66046511627907	5	2-10,3356-3348;11-21,3346-3336	1-1,3357-3357[UP5];x-x,3347-3347[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	UAUGUAAUAAUAAAUUAUAUAG&AUAUGUAAUU-AUUGUUAUAUA	4	0.99999944725364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN1975_c0_g2_3348_TPlot.pdf
TRINITY_DN1975_c18_g1:364	si_a309	TRINITY_DN1975_c18_g1	351	373	364	-33.60	-23.40	0.696428571428571	8	1-14,373-360;15-20,357-352	x-x,359-358[BULt];21-21,351-351[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	GCAUGGAAGUGAAUUCGGGCGGG&UUCGCUUGGAUUUA--UCCAUGA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN1975_c18_g1_364_TPlot.pdf
TRINITY_DN1975_c1_g1:534	si_a626	TRINITY_DN1975_c1_g1	523	543	534	-30.20	-20.30	0.672185430463576	8.5	2-16,542-528	1-1,543-543[UP5];17-21,527-523[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAUUUUUGAUAUAAUAUGCCG&AGGCGUAUUAUGUCGAUUUUU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN1975_c1_g1_534_TPlot.pdf
TRINITY_DN1975_c1_g1:535	si_a625	TRINITY_DN1975_c1_g1	524	544	535	-30.60	-20.30	0.663398692810457	9	3-17,542-528	1-2,544-543[UP5];18-21,527-524[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUUUUUGAUAUAAUAUGCCGU&UAGGCGUAUUAUGUCGAUUUU	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN1975_c1_g1_535_TPlot.pdf
TRINITY_DN19764_c0_g1:1535	si_a399	TRINITY_DN19764_c0_g1	1524	1544	1535	-22.60	-15.60	0.690265486725664	6.5	1-19,1544-1526	20-21,1525-1524[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAAAAUAAAAUAGUUUUGUAU&AUAUAGAAUUGUUUUGUUUAU	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN19764_c0_g1_1535_TPlot.pdf
TRINITY_DN1976_c0_g1:1566	si_s69	TRINITY_DN1976_c0_g1	1552	1575	1566	-23.40	-16.30	0.696581196581197	6	1-8,1575-1568;10-14,1566-1562;15-21,1558-1552	9-9,1567-1567[SIL];x-x,1561-1559[BULt]	(((((((...(((((.((((((((&)))))))).)))))---)))))))	GGAAGAAUGUGAAAAUUAGAAGUU&AACUUCUAUUUUUU---UUCUUUC	2	0.999999999995761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1976_c0_g1_1566_TPlot.pdf
TRINITY_DN19772_c0_g1:1450	si_a319	TRINITY_DN19772_c0_g1	1439	1459	1450	-22.40	-15.90	0.709821428571429	7	1-10,1459-1450;12-21,1448-1439	11-11,1449-1449[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AAUAGAGAAGAUGUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	2	0.999801676684109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN19772_c0_g1_1450_TPlot.pdf
TRINITY_DN19772_c0_g1:1451	si_a318	TRINITY_DN19772_c0_g1	1440	1460	1451	-22.50	-15.20	0.675555555555556	7.5	2-11,1459-1450;13-21,1448-1440	1-1,1460-1460[UP5];12-12,1449-1449[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AUAGAGAAGAUGUGGAUGAAC&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999937953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN19772_c0_g1_1451_TPlot.pdf
TRINITY_DN19772_c0_g1:1554	si_a142	TRINITY_DN19772_c0_g1	1543	1563	1554	-23.50	-16.10	0.685106382978724	15.5	7-19,1557-1545	1-6,1563-1558[UP5];20-21,1544-1543[UP3]	..(((((((((((((......&......)))))))))))))..	AAAAGACAACGGCGAGAAAGG&AAUUAAUCGUUGUUGUUUUAA	2	0.999993028122401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN19772_c0_g1_1554_TPlot.pdf
TRINITY_DN19772_c0_g1:1555	si_a141	TRINITY_DN19772_c0_g1	1544	1564	1555	-23.80	-16.10	0.676470588235294	16.5	8-20,1557-1545	1-7,1564-1558[UP5];21-21,1544-1544[UP3]	.(((((((((((((.......&.......))))))))))))).	AAAGACAACGGCGAGAAAGGC&UAAUUAAUCGUUGUUGUUUUA	3	0.999999993730206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN19772_c0_g1_1555_TPlot.pdf
TRINITY_DN19772_c0_g1:1556	si_a140	TRINITY_DN19772_c0_g1	1545	1564	1556	-25.20	-16.68	0.661904761904762	15	1-2,1564-1563;9-21,1557-1545	3-8,1562-1558[AILq]	(((((((((((((.....-((&))......)))))))))))))	AAGACAACGGCGAGAAAG-GC&GUAAUUAAUCGUUGUUGUUUU	2	0.999962583392229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN19772_c0_g1_1556_TPlot.pdf
TRINITY_DN19772_c0_g1:1562	si_a492	TRINITY_DN19772_c0_g1	1552	1571	1562	-30.20	-22.00	0.728476821192053	7	2-10,1570-1562;12-20,1561-1553	1-1,1571-1571[UP5];11-11,x-x[BULq];21-21,1552-1552[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	CGGCGAGAAA-GGCAUGUUCC&AGAAUAUGUCGUUUUUCGUCU	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN19772_c0_g1_1562_TPlot.pdf
TRINITY_DN19772_c0_g1:1563	si_a491	TRINITY_DN19772_c0_g1	1553	1572	1563	-29.90	-21.70	0.725752508361204	8	3-11,1570-1562;13-21,1561-1553	1-2,1572-1571[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GGCGAGAAA-GGCAUGUUCCC&UAGAAUAUGUCGUUUUUCGUC	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN19772_c0_g1_1563_TPlot.pdf
TRINITY_DN19772_c0_g1:1564	si_a490	TRINITY_DN19772_c0_g1	1554	1573	1564	-28.10	-19.30	0.686832740213523	9	4-12,1570-1562;14-21,1561-1554	1-3,1573-1571[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GCGAGAAA-GGCAUGUUCCCC&AUAGAAUAUGUCGUUUUUCGU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN19772_c0_g1_1564_TPlot.pdf
TRINITY_DN19772_c0_g1:161	si_s327	TRINITY_DN19772_c0_g1	150	173	161	-28.70	-19.40	0.67595818815331	10.5	1-9,173-165;10-18,161-153	x-x,164-162[BULt];19-21,152-150[UP3]	...(((((((((...(((((((((&)))))))))---)))))))))...	ACCAUCGUGUGUGCAUUGUGACAA&UUGUUACAA---ACAUACGAUUCA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s327_TRINITY_DN19772_c0_g1_161_TPlot.pdf
TRINITY_DN19772_c0_g1:166	si_s325	TRINITY_DN19772_c0_g1	152	175	166	-28.60	-19.50	0.681818181818182	11.5	3-11,173-165;12-20,161-153	1-2,175-174[UP5];x-x,164-162[BULt];21-21,152-152[UP3]	.(((((((((...(((((((((..&..)))))))))---))))))))).	CAUCGUGUGUGCAUUGUGACAACA&UCUUGUUACAA---ACAUACGAUU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s325_TRINITY_DN19772_c0_g1_166_TPlot.pdf
TRINITY_DN19772_c0_g1:167	si_s324	TRINITY_DN19772_c0_g1	153	176	167	-28.70	-19.50	0.679442508710801	12.5	4-12,173-165;13-21,161-153	1-3,176-174[UP5];x-x,164-162[BULt]	(((((((((...(((((((((...&...)))))))))---)))))))))	AUCGUGUGUGCAUUGUGACAACAU&UUCUUGUUACAA---ACAUACGAU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s324_TRINITY_DN19772_c0_g1_167_TPlot.pdf
TRINITY_DN19772_c0_g1:512	si_a633	TRINITY_DN19772_c0_g1	502	521	512	-26.40	-17.62	0.667424242424242	10	2-10,520-512;15-20,508-503	1-1,521-521[UP5];11-14,511-509[AILq];21-21,502-502[UP3]	.((((((...-(((((((((.&.)))))))))....)))))).	AACUCAAUCC-GUCGACAUGC&UUAUGUCGAUUUUUUUGAGUA	3	0.999999990600837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN19772_c0_g1_512_TPlot.pdf
TRINITY_DN19774_c0_g1:664	si_a183	TRINITY_DN19774_c0_g1	653	673	664	-30.10	-20.00	0.664451827242525	15.5	9-21,665-653	1-8,673-666[UP5]	(((((((((((((........&........)))))))))))))	GACAGGGAAAGAUUAUACACA&UAGAUAAUAUCUUUCCCUGUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN19774_c0_g1_664_TPlot.pdf
TRINITY_DN19778_c0_g1:112	si_s790	TRINITY_DN19778_c0_g1	101	121	112	-27.80	-19.08	0.686330935251798	5.5	2-13,120-109;17-21,105-101	1-1,121-121[UP5];14-16,108-106[SIL]	(((((...((((((((((((.&.))))))))))))...)))))	GAUGACUAAUGAGCUUGUUUA&AAAACAAGCUCGUAUUUUAUC	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN19778_c0_g1_112_TPlot.pdf
TRINITY_DN19778_c0_g1:24	si_s16	TRINITY_DN19778_c0_g1	13	34	24	-25.60	-17.40	0.6796875	5	1-9,34-26;10-18,24-16	x-x,25-25[BULt];19-21,15-13[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	CAACAAUCAAUAUUAGUAAUAA&UUAUUACUA-UAUUGAUUGCAA	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN19778_c0_g1_24_TPlot.pdf
TRINITY_DN19786_c0_g1:500	si_s71	TRINITY_DN19786_c0_g1	488	513	500	-25.70	-17.20	0.669260700389105	11.5	1-6,513-508;7-19,503-491;20-21,489-488	x-x,507-504[BULt];x-x,490-490[BULt]	((.(((((((((((((....((((((&))))))----)))))))))))))-))	GGAGGAAGAGAAAAAACCGCUGGAAG&CUUCUA----UUUUUUUUCUUUC-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN19786_c0_g1_500_TPlot.pdf
TRINITY_DN19786_c0_g1:75	si_a783	TRINITY_DN19786_c0_g1	64	84	75	-24.70	-16.90	0.684210526315789	11.5	3-6,82-79;8-19,77-66	1-2,84-83[UP5];7-7,78-78[SIL];20-21,65-64[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	UUAUGGGGAAGUGGUGGAGGU&AACUCUUCUAUUUUUCUAUUU	4	0.999999999975193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN19786_c0_g1_75_TPlot.pdf
TRINITY_DN1978_c0_g2:1691	si_s43	TRINITY_DN1978_c0_g2	1680	1705	1691	-25.50	-17.80	0.698039215686275	15	1-8,1705-1698;9-19,1692-1682	x-x,1697-1693[BULt];20-21,1681-1680[UP3]	..(((((((((((.....((((((((&))))))))-----)))))))))))..	CAUGAAAUCCGAUAAAAAUGUUAGAG&CUUUAAUA-----AUUGGAUUUCAAG	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN1978_c0_g2_1691_TPlot.pdf
TRINITY_DN1978_c0_g2:1698	si_s41	TRINITY_DN1978_c0_g2	1682	1707	1698	-25.00	-20.30	0.812	12.5	1-10,1707-1698;11-21,1692-1682	x-x,1697-1693[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	UGAAAUCCGAUAAAAAUGUUAGAGAU&AUCUUUAAUA-----AUUGGAUUUCA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN1978_c0_g2_1698_TPlot.pdf
TRINITY_DN1978_c0_g2:1699	si_s40	TRINITY_DN1978_c0_g2	1683	1708	1699	-24.30	-19.10	0.786008230452675	13.5	2-11,1707-1698;12-21,1692-1683	1-1,1708-1708[UP5];x-x,1697-1693[BULt]	((((((((((.....((((((((((.&.))))))))))-----))))))))))	GAAAUCCGAUAAAAAUGUUAGAGAUA&AAUCUUUAAUA-----AUUGGAUUUC	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN1978_c0_g2_1699_TPlot.pdf
TRINITY_DN1978_c0_g2:1700	si_s39	TRINITY_DN1978_c0_g2	1684	1709	1700	-22.30	-16.10	0.721973094170404	15.5	3-12,1707-1698;13-21,1692-1684	1-2,1709-1708[UP5];x-x,1697-1693[BULt]	(((((((((.....((((((((((..&..))))))))))-----)))))))))	AAAUCCGAUAAAAAUGUUAGAGAUAG&AAAUCUUUAAUA-----AUUGGAUUU	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN1978_c0_g2_1700_TPlot.pdf
TRINITY_DN1978_c0_g2:4708	si_s543	TRINITY_DN1978_c0_g2	4696	4717	4708	-28.80	-19.60	0.680555555555556	8.5	1-10,4717-4708;13-20,4704-4697	11-12,4707-4705[AILt];21-21,4696-4696[UP3]	.((((((((...((((((((((&))))))))))-..)))))))).	AAAUUUUAUAAAUGAUCGGGUC&GAUCCGAUCA-AAAUAGAAUUA	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN1978_c0_g2_4708_TPlot.pdf
TRINITY_DN1978_c0_g3:244	si_a461	TRINITY_DN1978_c0_g3	230	253	244	-21.50	-14.52	0.675348837209302	11.5	1-12,253-242;15-21,236-230	13-14,241-237[AILt]	(((((((.....((((((((((((&))))))))))))---..)))))))	AAUUACGGUGUUUUAUAUGUGGCA&UGUUAUAUAUAA---UAUGUAAUU	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN1978_c0_g3_244_TPlot.pdf
TRINITY_DN19790_c1_g1:242	si_a788	TRINITY_DN19790_c1_g1	231	251	242	-24.80	-16.46	0.663709677419355	11	1-6,251-246;11-20,241-232	7-10,245-242[SIL];21-21,231-231[UP3]	.((((((((((....((((((&))))))....)))))))))).	AUGGGAGAUAGCUAUGUAGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN19790_c1_g1_242_TPlot.pdf
TRINITY_DN197_c0_g1:1633	si_s899	TRINITY_DN197_c0_g1	1622	1642	1633	-28.30	-21.10	0.745583038869258	7.5	1-9,1642-1634;11-17,1632-1626	10-10,1633-1633[SIL];18-21,1625-1622[UP3]	....(((((((.(((((((((&))))))))).)))))))....	GAAAGAAGUUGUAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN197_c0_g1_1633_TPlot.pdf
TRINITY_DN197_c0_g1:1634	si_s898	TRINITY_DN197_c0_g1	1623	1643	1634	-30.70	-24.40	0.794788273615635	6.5	1-10,1643-1634;12-18,1632-1626	11-11,1633-1633[SIL];19-21,1625-1623[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AAAGAAGUUGUAGAGGAAGCC&GGCUUUCUCUUCAAUUUCAAU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN197_c0_g1_1634_TPlot.pdf
TRINITY_DN197_c0_g1:1636	si_s896	TRINITY_DN197_c0_g1	1625	1645	1636	-31.60	-24.60	0.778481012658228	6.5	3-12,1643-1634;14-20,1632-1626	1-2,1645-1644[UP5];13-13,1633-1633[SIL];21-21,1625-1625[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	AGAAGUUGUAGAGGAAGCCCU&UAGGCUUUCUCUUCAAUUUCA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN197_c0_g1_1636_TPlot.pdf
TRINITY_DN197_c0_g1:1637	si_s895	TRINITY_DN197_c0_g1	1626	1646	1637	-31.10	-24.10	0.77491961414791	7.5	4-13,1643-1634;15-21,1632-1626	1-3,1646-1644[UP5];14-14,1633-1633[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GAAGUUGUAGAGGAAGCCCUU&AUAGGCUUUCUCUUCAAUUUC	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN197_c0_g1_1637_TPlot.pdf
TRINITY_DN197_c0_g1:1638	si_s894	TRINITY_DN197_c0_g1	1627	1647	1638	-29.10	-20.90	0.718213058419244	9.5	5-14,1643-1634;16-21,1632-1627	1-4,1647-1644[UP5];15-15,1633-1633[SIL]	((((((.((((((((((....&....)))))))))).))))))	AAGUUGUAGAGGAAGCCCUUU&AAUAGGCUUUCUCUUCAAUUU	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN197_c0_g1_1638_TPlot.pdf
TRINITY_DN197_c0_g1:1641	si_s891	TRINITY_DN197_c0_g1	1630	1650	1641	-29.60	-19.50	0.658783783783784	6.5	2-5,1649-1646;8-17,1643-1634;19-21,1632-1630	1-1,1650-1650[UP5];6-7,1645-1644[SIL];18-18,1633-1633[SIL]	(((.((((((((((..((((.&.))))..)))))))))).)))	UUGUAGAGGAAGCCCUUUUAA&AUAAAUAGGCUUUCUCUUCAA	4	0.999994646216814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN197_c0_g1_1641_TPlot.pdf
TRINITY_DN197_c0_g1:1644	si_s888	TRINITY_DN197_c0_g1	1633	1653	1644	-26.80	-17.60	0.656716417910448	12.5	5-8,1649-1646;11-20,1643-1634	1-4,1653-1650[UP5];9-10,1645-1644[SIL];21-21,1633-1633[UP3]	.((((((((((..((((....&....))))..)))))))))).	UAGAGGAAGCCCUUUUAAUUG&AAAAUAAAUAGGCUUUCUCUU	3	0.999991544621683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN197_c0_g1_1644_TPlot.pdf
TRINITY_DN197_c0_g1:1645	si_s887	TRINITY_DN197_c0_g1	1634	1654	1645	-26.80	-17.60	0.656716417910448	13.5	6-9,1649-1646;12-21,1643-1634	1-5,1654-1650[UP5];10-11,1645-1644[SIL]	((((((((((..((((.....&.....))))..))))))))))	AGAGGAAGCCCUUUUAAUUGA&AAAAAUAAAUAGGCUUUCUCU	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN197_c0_g1_1645_TPlot.pdf
TRINITY_DN197_c0_g1:1728	si_a406	TRINITY_DN197_c0_g1	1718	1737	1728	-19.80	-12.90	0.651515151515151	7.5	2-12,1736-1726;14-19,1725-1720	1-1,1737-1737[UP5];13-13,x-x[BULq];20-21,1719-1718[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	CGUAGAUA-AGACAGAACAGC&AUUGUUUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN197_c0_g1_1728_TPlot.pdf
TRINITY_DN197_c0_g1:1729	si_a405	TRINITY_DN197_c0_g1	1719	1738	1729	-19.80	-12.90	0.651515151515151	8.5	3-13,1736-1726;15-20,1725-1720	1-2,1738-1737[UP5];14-14,x-x[BULq];21-21,1719-1719[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	GUAGAUA-AGACAGAACAGCA&AAUUGUUUUGUUUAUAUUUAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN197_c0_g1_1729_TPlot.pdf
TRINITY_DN197_c0_g1:2118	si_s71	TRINITY_DN197_c0_g1	2107	2133	2118	-25.70	-17.14	0.666926070038911	20	1-5,2133-2129;8-20,2120-2108	6-7,2128-2121[AILt];21-21,2107-2107[UP3]	.(((((((((((((........(((((&)))))------..))))))))))))).	CGGAAAGAAGGAGACUGAUUAGAGAAG&CUUCU------AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN197_c0_g1_2118_TPlot.pdf
TRINITY_DN197_c0_g1:2306	si_a789	TRINITY_DN197_c0_g1	2296	2315	2306	-24.80	-16.30	0.657258064516129	8.5	1-11,2315-2305;13-18,2304-2299	12-12,x-x[BULq];19-21,2298-2296[UP3]	...((((((-(((((((((((&))))))))))).))))))...	AACGGGAAG-AGGAAGAUAGG&UCUAUUUUUCUAUUUUCCAAU	3	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN197_c0_g1_2306_TPlot.pdf
TRINITY_DN197_c0_g1:2307	si_a788	TRINITY_DN197_c0_g1	2297	2316	2307	-24.80	-16.40	0.661290322580645	8	2-12,2315-2305;14-19,2304-2299	1-1,2316-2316[UP5];13-13,x-x[BULq];20-21,2298-2297[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	ACGGGAAG-AGGAAGAUAGGC&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN197_c0_g1_2307_TPlot.pdf
TRINITY_DN197_c0_g1:2309	si_s86	TRINITY_DN197_c0_g1	2298	2318	2309	-32.90	-22.20	0.674772036474164	9.5	4-6,2315-2313;8-18,2311-2301;20-20,2299-2299	1-3,2318-2316[UP5];7-7,2312-2312[SIL];19-19,2300-2300[SIL];21-21,2298-2298[UP3]	.(.(((((((((((.(((...&...))).))))))))))).).	CGGGAAGAGGAAGAUAGGCUG&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN197_c0_g1_2309_TPlot.pdf
TRINITY_DN197_c0_g1:2311	si_s84	TRINITY_DN197_c0_g1	2300	2321	2311	-32.30	-23.40	0.724458204334365	8.5	1-4,2321-2318;6-8,2315-2313;10-20,2311-2301	5-5,2317-2316[AILt];9-9,2312-2312[SIL];21-21,2300-2300[UP3]	.(((((((((((.(((..((((&))))-.))).))))))))))).	GGAAGAGGAAGAUAGGCUGAGA&UCUU-UCCUUUCUUCUUCUUCG	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN197_c0_g1_2311_TPlot.pdf
TRINITY_DN197_c0_g1:2312	si_s83	TRINITY_DN197_c0_g1	2301	2322	2312	-30.90	-22.90	0.741100323624595	8.5	2-5,2321-2318;7-9,2315-2313;11-21,2311-2301	1-1,2322-2322[UP5];6-6,2317-2316[AILt];10-10,2312-2312[SIL]	(((((((((((.(((..((((.&.))))-.))).)))))))))))	GAAGAGGAAGAUAGGCUGAGAC&UUCUU-UCCUUUCUUCUUCUUC	3	0.999999877072956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN197_c0_g1_2312_TPlot.pdf
TRINITY_DN197_c0_g1:2313	si_s82	TRINITY_DN197_c0_g1	2302	2323	2313	-28.90	-19.70	0.681660899653979	10.5	3-6,2321-2318;8-10,2315-2313;12-21,2311-2302	1-2,2323-2322[UP5];7-7,2317-2316[AILt];11-11,2312-2312[SIL]	((((((((((.(((..((((..&..))))-.))).))))))))))	AAGAGGAAGAUAGGCUGAGACG&UUUCUU-UCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN197_c0_g1_2313_TPlot.pdf
TRINITY_DN197_c0_g1:2314	si_s81	TRINITY_DN197_c0_g1	2303	2324	2314	-28.90	-18.80	0.650519031141869	12.5	4-7,2321-2318;9-11,2315-2313;13-21,2311-2303	1-3,2324-2322[UP5];8-8,2317-2316[AILt];12-12,2312-2312[SIL]	(((((((((.(((..((((...&...))))-.))).)))))))))	AGAGGAAGAUAGGCUGAGACGA&UUUUCUU-UCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN197_c0_g1_2314_TPlot.pdf
TRINITY_DN197_c0_g1:2319	si_a786	TRINITY_DN197_c0_g1	2306	2329	2319	-26.60	-18.40	0.691729323308271	11.5	1-6,2329-2324;8-11,2321-2318;12-21,2315-2306	7-7,2323-2322[AILt];x-x,2317-2316[BULt]	((((((((((..((((..((((((&))))))-.))))--))))))))))	GGAAGAUAGGCUGAGACGAGAAGA&UCUUCU-AUUUU--UCUAUUUUCC	4	0.999999989055347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN197_c0_g1_2319_TPlot.pdf
TRINITY_DN197_c0_g1:2353	si_s899	TRINITY_DN197_c0_g1	2338	2362	2353	-28.30	-20.00	0.706713780918728	12.5	1-10,2362-2353;11-18,2348-2341	x-x,2352-2349[BULt];19-21,2340-2338[UP3]	...((((((((....((((((((((&))))))))))----))))))))...	GGAUGAAGUUGUUGAAAGAGGAAGC&GCUUUCUCUU----CAAUUUCAAUU	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN197_c0_g1_2353_TPlot.pdf
TRINITY_DN197_c0_g1:2356	si_s896	TRINITY_DN197_c0_g1	2341	2365	2356	-31.60	-23.70	0.75	8.5	3-13,2363-2353;14-21,2348-2341	1-2,2365-2364[UP5];x-x,2352-2349[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	UGAAGUUGUUGAAAGAGGAAGCCGA&UAGGCUUUCUCUU----CAAUUUCA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN197_c0_g1_2356_TPlot.pdf
TRINITY_DN197_c0_g1:2357	si_s895	TRINITY_DN197_c0_g1	2342	2366	2357	-31.10	-22.30	0.717041800643087	10.5	4-14,2363-2353;15-21,2348-2342	1-3,2366-2364[UP5];x-x,2352-2349[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	GAAGUUGUUGAAAGAGGAAGCCGAA&AUAGGCUUUCUCUU----CAAUUUC	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN197_c0_g1_2357_TPlot.pdf
TRINITY_DN197_c0_g1:2360	si_s892	TRINITY_DN197_c0_g1	2348	2369	2360	-29.50	-20.30	0.688135593220339	13.5	7-17,2363-2353;18-21,2351-2348	1-6,2369-2364[UP5];x-x,2352-2352[BULt]	((((.(((((((((((......&......)))))))))))-))))	GUUGAAAGAGGAAGCCGAAAAG&UAAAUAGGCUUUCUCUU-CAAU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN197_c0_g1_2360_TPlot.pdf
TRINITY_DN197_c0_g1:2452	si_s76	TRINITY_DN197_c0_g1	2434	2461	2452	-23.60	-17.40	0.73728813559322	17.5	1-10,2461-2452;11-21,2444-2434	x-x,2451-2445[BULt]	(((((((((((.......((((((((((&))))))))))-------)))))))))))	AAGAAAGGGAAGCGCGACGAAAGAGAGU&AUUUUUUUUC-------UUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN197_c0_g1_2452_TPlot.pdf
TRINITY_DN197_c0_g1:2453	si_s75	TRINITY_DN197_c0_g1	2435	2462	2453	-24.00	-17.80	0.741666666666667	17.5	1-11,2462-2452;12-21,2444-2435	x-x,2451-2445[BULt]	((((((((((.......(((((((((((&)))))))))))-------))))))))))	AGAAAGGGAAGCGCGACGAAAGAGAGUA&UAUUUUUUUUC-------UUUCCUUUCU	2	0.999999980163895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN197_c0_g1_2453_TPlot.pdf
TRINITY_DN197_c0_g1:2454	si_s74	TRINITY_DN197_c0_g1	2436	2463	2454	-25.00	-19.40	0.776	17.5	1-12,2463-2452;13-21,2444-2436	x-x,2451-2445[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	GAAAGGGAAGCGCGACGAAAGAGAGUAG&CUAUUUUUUUUC-------UUUCCUUUC	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN197_c0_g1_2454_TPlot.pdf
TRINITY_DN197_c0_g1:2455	si_s73	TRINITY_DN197_c0_g1	2438	2464	2455	-24.00	-18.10	0.754166666666667	10	1-13,2464-2452;14-21,2445-2438	x-x,2451-2446[BULt]	((((((((......(((((((((((((&)))))))))))))------))))))))	AAGGGAAGCGCGACGAAAGAGAGUAGA&UCUAUUUUUUUUC------UUUCCUUU	3	0.999999978003951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN197_c0_g1_2455_TPlot.pdf
TRINITY_DN197_c0_g1:2456	si_s72	TRINITY_DN197_c0_g1	2439	2465	2456	-24.10	-17.60	0.730290456431535	10.5	1-14,2465-2452;15-21,2445-2439	x-x,2451-2446[BULt]	(((((((......((((((((((((((&))))))))))))))------)))))))	AGGGAAGCGCGACGAAAGAGAGUAGAG&UUCUAUUUUUUUUC------UUUCCUU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN197_c0_g1_2456_TPlot.pdf
TRINITY_DN197_c0_g1:2457	si_s71	TRINITY_DN197_c0_g1	2440	2466	2457	-25.70	-19.30	0.750972762645914	11	1-15,2466-2452;16-21,2445-2440	x-x,2451-2446[BULt]	((((((......(((((((((((((((&)))))))))))))))------))))))	GGGAAGCGCGACGAAAGAGAGUAGAGG&CUUCUAUUUUUUUUC------UUUCCU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN197_c0_g1_2457_TPlot.pdf
TRINITY_DN197_c0_g1:2458	si_s70	TRINITY_DN197_c0_g1	2441	2467	2458	-25.80	-18.80	0.728682170542636	11.5	2-16,2466-2452;17-21,2445-2441	1-1,2467-2467[UP5];x-x,2451-2446[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	GGAAGCGCGACGAAAGAGAGUAGAGGC&ACUUCUAUUUUUUUUC------UUUCC	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN197_c0_g1_2458_TPlot.pdf
TRINITY_DN197_c0_g1:2459	si_s69	TRINITY_DN197_c0_g1	2448	2468	2459	-23.40	-16.90	0.722222222222222	10.5	3-17,2466-2452	1-2,2468-2467[UP5];18-21,2451-2448[UP3]	....(((((((((((((((..&..)))))))))))))))....	CGACGAAAGAGAGUAGAGGCU&AACUUCUAUUUUUUUUCUUUC	3	0.999999999999041	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN197_c0_g1_2459_TPlot.pdf
TRINITY_DN197_c0_g1:2460	si_s68	TRINITY_DN197_c0_g1	2449	2469	2460	-23.10	-16.90	0.731601731601731	11.5	4-18,2466-2452	1-3,2469-2467[UP5];19-21,2451-2449[UP3]	...(((((((((((((((...&...)))))))))))))))...	GACGAAAGAGAGUAGAGGCUA&CAACUUCUAUUUUUUUUCUUU	2	0.999635050167001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN197_c0_g1_2460_TPlot.pdf
TRINITY_DN197_c0_g1:2461	si_s67	TRINITY_DN197_c0_g1	2450	2470	2461	-25.60	-16.90	0.66015625	12	5-19,2466-2452	1-4,2470-2467[UP5];20-21,2451-2450[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGAAAGAGAGUAGAGGCUAU&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN197_c0_g1_2461_TPlot.pdf
TRINITY_DN19817_c0_g1:653	si_s72	TRINITY_DN19817_c0_g1	642	662	653	-24.10	-17.80	0.738589211618257	9.5	2-8,661-655;10-11,653-652;13-21,650-642	1-1,662-662[UP5];9-9,654-654[SIL];12-12,651-651[SIL]	(((((((((.((.(((((((.&.))))))).)).)))))))))	GAGGAAAGAUGAUGAAUGGGG&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999892583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN19817_c0_g1_653_TPlot.pdf
TRINITY_DN1981_c2_g1:308	si_a864	TRINITY_DN1981_c2_g1	294	318	308	-25.00	-16.70	0.668	9	1-8,318-311;9-13,309-305;14-21,301-294	x-x,310-310[BULt];x-x,304-302[BULt]	((((((((...(((((.((((((((&))))))))-)))))---))))))))	ACUGAGUCCCCUUUGAUUGGUUGGA&UCCAAUUA-UUAAA---GAUUUAGU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a864_TRINITY_DN1981_c2_g1_308_TPlot.pdf
TRINITY_DN19820_c0_g1:1432	si_s430	TRINITY_DN19820_c0_g1	1421	1441	1432	-21.30	-16.10	0.755868544600939	9.5	5-19,1437-1423	1-4,1441-1438[UP5];20-21,1422-1421[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGUAUGUAAUUAUUGUCCUA&UAUAACAAUAAUUACAUAUUA	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN19820_c0_g1_1432_TPlot.pdf
TRINITY_DN1982_c0_g1:360	si_s820	TRINITY_DN1982_c0_g1	349	369	360	-22.10	-15.50	0.701357466063348	8	1-15,369-355	16-21,354-349[UP3]	......(((((((((((((((&)))))))))))))))......	GAAGAAUCAUUAUUAGGAAGA&UUUUCUUAAUAAUGAAAAACA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN1982_c0_g1_360_TPlot.pdf
TRINITY_DN1982_c0_g1:361	si_s819	TRINITY_DN1982_c0_g1	350	370	361	-23.00	-15.70	0.682608695652174	8	2-16,369-355	1-1,370-370[UP5];17-21,354-350[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAGAAUCAUUAUUAGGAAGAA&CUUUUCUUAAUAAUGAAAAAC	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN1982_c0_g1_361_TPlot.pdf
TRINITY_DN1982_c0_g1:366	si_s814	TRINITY_DN1982_c0_g1	355	377	366	-26.60	-17.80	0.669172932330827	10	4-9,374-369;10-21,366-355	1-3,377-375[UP5];x-x,368-367[BULt]	((((((((((((..((((((...&...))))))--))))))))))))	UCAUUAUUAGGAAGAAAGGUUUA&GUUACCUUU--UCUUAAUAAUGA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN1982_c0_g1_366_TPlot.pdf
TRINITY_DN19831_c0_g1:1544	si_a24	TRINITY_DN19831_c0_g1	1533	1553	1544	-24.20	-16.00	0.661157024793388	9	2-17,1552-1537	1-1,1553-1553[UP5];18-21,1536-1533[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAAAUGGGACUGAAAGUAGAA&AUUUAUUUUUAGUUCUAAGAC	4	0.999975336164604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN19831_c0_g1_1544_TPlot.pdf
TRINITY_DN19838_c0_g2:54	si_s322	TRINITY_DN19838_c0_g2	42	63	54	-31.50	-20.60	0.653968253968254	8	1-13,63-51;14-16,49-47	x-x,50-50[BULt];17-21,46-42[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	UCUUAGUUAUGUAACAGGAGGG&CCUUCUUGUUACA-AACAUACG	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s322_TRINITY_DN19838_c0_g2_54_TPlot.pdf
TRINITY_DN19838_c0_g2:55	si_s321	TRINITY_DN19838_c0_g2	43	64	55	-31.00	-22.20	0.716129032258064	7	1-14,64-51;15-17,49-47	x-x,50-50[BULt];18-21,46-43[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	CUUAGUUAUGUAACAGGAGGGA&UCCUUCUUGUUACA-AACAUAC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN19838_c0_g2_55_TPlot.pdf
TRINITY_DN19838_c0_g2:56	si_s320	TRINITY_DN19838_c0_g2	44	65	56	-31.00	-22.20	0.716129032258064	7	2-15,64-51;16-18,49-47	1-1,65-65[UP5];x-x,50-50[BULt];19-21,46-44[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	UUAGUUAUGUAACAGGAGGGAA&GUCCUUCUUGUUACA-AACAUA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN19838_c0_g2_56_TPlot.pdf
TRINITY_DN19838_c0_g2:57	si_s319	TRINITY_DN19838_c0_g2	45	67	57	-31.30	-22.50	0.718849840255591	7	1-3,67-65;4-16,63-51;17-19,49-47	x-x,64-64[BULt];x-x,50-50[BULt];20-21,46-45[UP3]	..(((.(((((((((((((.(((&)))-)))))))))))))-)))..	UAGUUAUGUAACAGGAGGGAACA&UGU-CCUUCUUGUUACA-AACAU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN19838_c0_g2_57_TPlot.pdf
TRINITY_DN19838_c0_g2:60	si_s316	TRINITY_DN19838_c0_g2	49	70	60	-31.50	-21.30	0.676190476190476	11	4-6,67-65;7-19,63-51	1-3,70-68[UP5];x-x,64-64[BULt];20-21,50-49[UP3]	..(((((((((((((.(((...&...)))-)))))))))))))..	UAUGUAACAGGAGGGAACAUGU&UUCUGU-CCUUCUUGUUACAAA	0	0.193561567588861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN19838_c0_g2_60_TPlot.pdf
TRINITY_DN19838_c0_g2:62	si_s314	TRINITY_DN19838_c0_g2	51	72	62	-31.50	-21.10	0.66984126984127	12.5	6-8,67-65;9-21,63-51	1-5,72-68[UP5];x-x,64-64[BULt]	(((((((((((((.(((.....&.....)))-)))))))))))))	UGUAACAGGAGGGAACAUGUAA&AAUUCUGU-CCUUCUUGUUACA	2	0.998999857313047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN19838_c0_g2_62_TPlot.pdf
TRINITY_DN19840_c0_g2:1542	si_a449	TRINITY_DN19840_c0_g2	1531	1551	1542	-25.70	-17.60	0.684824902723736	11	4-18,1548-1534	1-3,1551-1549[UP5];19-21,1533-1531[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUAAUAACAGCGGUUAUCAAU&UGAGAUAAUUGUUGUUAUAUA	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN19840_c0_g2_1542_TPlot.pdf
TRINITY_DN19843_c0_g1:2198	si_s87	TRINITY_DN19843_c0_g1	2187	2207	2198	-32.90	-21.40	0.650455927051672	8	3-14,2205-2194;16-18,2192-2190	1-2,2207-2206[UP5];15-15,2193-2193[SIL];19-21,2189-2187[UP3]	...(((.((((((((((((..&..)))))))))))).)))...	UGACGAUGAAGAAGGAAGGCA&UUCCUUUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN19843_c0_g1_2198_TPlot.pdf
TRINITY_DN19843_c0_g1:749	si_s692	TRINITY_DN19843_c0_g1	738	758	749	-24.20	-16.00	0.661157024793388	7.5	3-18,756-741	1-2,758-757[UP5];19-21,740-738[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAAAUUGACUAAUUAAGGG&AGUUUAAUUAGUCGAUUUAUU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN19843_c0_g1_749_TPlot.pdf
TRINITY_DN19844_c0_g1:12	si_s75	TRINITY_DN19844_c0_g1	1	21	12	-24.00	-17.30	0.720833333333333	11	3-8,19-14;11-21,11-1	1-2,21-20[UP5];9-10,13-12[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GGAAAGGGAGGUUAAGGAAGA&UAUUUUUUUUCUUUCCUUUCU	0	0.633441020862778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN19844_c0_g1_12_TPlot.pdf
TRINITY_DN19853_c0_g2:109	si_a442	TRINITY_DN19853_c0_g2	95	118	109	-29.30	-19.50	0.665529010238908	9	1-10,118-109;11-12,107-106;13-20,103-96	x-x,108-108[BULt];x-x,105-104[BULt];21-21,95-95[UP3]	.((((((((..((.((((((((((&))))))))))-))--)))))))).	AAACAGUUGGCUCGUCAUGUCCAA&UUGGAUAUGA-GA--UAAUUGUUG	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN19853_c0_g2_109_TPlot.pdf
TRINITY_DN19853_c0_g2:110	si_a441	TRINITY_DN19853_c0_g2	96	119	110	-29.30	-19.10	0.651877133105802	7	2-11,118-109;12-13,107-106;14-21,103-96	1-1,119-119[UP5];x-x,108-108[BULt];x-x,105-104[BULt]	((((((((..((.((((((((((.&.))))))))))-))--))))))))	AACAGUUGGCUCGUCAUGUCCAAG&GUUGGAUAUGA-GA--UAAUUGUU	2	0.986177743532797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN19853_c0_g2_110_TPlot.pdf
TRINITY_DN19853_c0_g2:158	si_s76	TRINITY_DN19853_c0_g2	147	167	158	-23.60	-16.40	0.694915254237288	10	3-15,165-153;18-19,150-149	1-2,167-166[UP5];16-17,152-151[SIL];20-21,148-147[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	UUGACUGGAGAGAGAAGAACG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN19853_c0_g2_158_TPlot.pdf
TRINITY_DN19853_c0_g2:159	si_s75	TRINITY_DN19853_c0_g2	148	168	159	-24.00	-16.40	0.683333333333333	10.5	4-16,165-153;19-20,150-149	1-3,168-166[UP5];17-18,152-151[SIL];21-21,148-148[UP3]	.((..(((((((((((((...&...)))))))))))))..)).	UGACUGGAGAGAGAAGAACGC&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN19853_c0_g2_159_TPlot.pdf
TRINITY_DN19853_c0_g2:164	si_s70	TRINITY_DN19853_c0_g2	153	180	164	-25.80	-17.70	0.686046511627907	19	1-7,180-174;9-21,165-153	8-8,173-166[AILt]	(((((((((((((........(((((((&)))))))-------.)))))))))))))	GGAGAGAGAAGAACGCCGUAUUGGAAGU&ACUUCUA-------UUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN19853_c0_g2_164_TPlot.pdf
TRINITY_DN19858_c0_g1:3334	si_s809	TRINITY_DN19858_c0_g1	3323	3343	3334	-28.50	-19.00	0.666666666666667	9	1-15,3343-3329;17-18,3327-3326	16-16,3328-3328[SIL];19-21,3325-3323[UP3]	...((.(((((((((((((((&))))))))))))))).))...	GCGGAUGAAGGGUGAUGAGGA&UCUUCGUUACCUUUUCUUAAU	4	0.999999998145513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN19858_c0_g1_3334_TPlot.pdf
TRINITY_DN19858_c0_g1:3335	si_s808	TRINITY_DN19858_c0_g1	3324	3344	3335	-28.60	-19.00	0.664335664335664	8.5	2-16,3343-3329;18-19,3327-3326	1-1,3344-3344[UP5];17-17,3328-3328[SIL];20-21,3325-3324[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	CGGAUGAAGGGUGAUGAGGAC&AUCUUCGUUACCUUUUCUUAA	2	0.999999421516465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN19858_c0_g1_3335_TPlot.pdf
TRINITY_DN19858_c0_g1:3336	si_s807	TRINITY_DN19858_c0_g1	3325	3345	3336	-28.90	-19.00	0.657439446366782	9.5	3-17,3343-3329;19-20,3327-3326	1-2,3345-3344[UP5];18-18,3328-3328[SIL];21-21,3325-3325[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	GGAUGAAGGGUGAUGAGGACG&UAUCUUCGUUACCUUUUCUUA	2	0.999999939947991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN19858_c0_g1_3336_TPlot.pdf
TRINITY_DN19858_c0_g1:3339	si_s804	TRINITY_DN19858_c0_g1	3328	3348	3339	-27.90	-19.00	0.681003584229391	13.5	6-20,3343-3329	1-5,3348-3344[UP5];21-21,3328-3328[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAAGGGUGAUGAGGACGACG&UUUUAUCUUCGUUACCUUUUC	2	0.999964840884371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN19858_c0_g1_3339_TPlot.pdf
TRINITY_DN19858_c0_g1:3341	si_s802	TRINITY_DN19858_c0_g1	3330	3350	3341	-26.40	-17.90	0.678030303030303	15.5	8-21,3343-3330	1-7,3350-3344[UP5]	((((((((((((((.......&.......))))))))))))))	AAGGGUGAUGAGGACGACGAC&UAUUUUAUCUUCGUUACCUUU	4	0.999999962234629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN19858_c0_g1_3341_TPlot.pdf
TRINITY_DN19858_c0_g1:720	si_a369	TRINITY_DN19858_c0_g1	710	729	720	-30.00	-20.30	0.676666666666667	6	1-11,729-719;15-20,716-711	12-14,718-717[AILq];21-21,710-710[UP3]	.((((((..-(((((((((((&)))))))))))...)))))).	CAAAUCAAA-UUGGUCCGAUC&GAUCGGAUCAAAAAUGAUUUC	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN19858_c0_g1_720_TPlot.pdf
TRINITY_DN19858_c0_g1:721	si_a368	TRINITY_DN19858_c0_g1	711	730	721	-28.70	-20.50	0.714285714285714	5	2-12,729-719;16-21,716-711	1-1,730-730[UP5];13-15,718-717[AILq]	((((((..-(((((((((((.&.)))))))))))...))))))	AAAUCAAA-UUGGUCCGAUCU&UGAUCGGAUCAAAAAUGAUUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a368_TRINITY_DN19858_c0_g1_721_TPlot.pdf
TRINITY_DN19858_c0_g1:996	si_a147	TRINITY_DN19858_c0_g1	980	1005	996	-30.40	-20.40	0.671052631578947	11	2-13,1004-993;14-20,987-981	1-1,1005-1005[UP5];x-x,992-988[BULt];21-21,980-980[UP3]	.(((((((.....((((((((((((.&.))))))))))))-----))))))).	CGGCUUUGCUGAGGAGCAACGACGAC&AUCGUUGUUGUUU-----UAAGGUCA	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN19858_c0_g1_996_TPlot.pdf
TRINITY_DN19858_c0_g1:999	si_a144	TRINITY_DN19858_c0_g1	988	1008	999	-27.40	-17.90	0.653284671532847	12	5-17,1004-992;20-21,989-988	1-4,1008-1005[UP5];18-19,991-990[SIL]	((..(((((((((((((....&....)))))))))))))..))	CUGAGGAGCAACGACGACGCC&UUAAUCGUUGUUGUUUUAAGG	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN19858_c0_g1_999_TPlot.pdf
TRINITY_DN1985_c0_g1:1759	si_s315	TRINITY_DN1985_c0_g1	1748	1769	1759	-31.60	-21.10	0.667721518987342	8.5	2-4,1768-1766;5-17,1764-1752	1-1,1769-1769[UP5];x-x,1765-1765[BULt];18-21,1751-1748[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	AGCAAACAGGAAGGACAUGGAG&AUUC-UGUCCUUCUUGUUACAA	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN1985_c0_g1_1759_TPlot.pdf
TRINITY_DN1985_c0_g1:1772	si_s71	TRINITY_DN1985_c0_g1	1759	1781	1772	-25.70	-17.60	0.684824902723736	9	2-16,1780-1766;18-21,1762-1759	1-1,1781-1781[UP5];17-17,1765-1763[AILt]	((((...(((((((((((((((.&.)))))))))))))))--.))))	AGGACAUGGAGGAGAAGUGGAAC&CUUCUAUUUUUUUUCU--UUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1985_c0_g1_1772_TPlot.pdf
TRINITY_DN1985_c0_g1:1779	si_s79	TRINITY_DN1985_c0_g1	1767	1788	1779	-26.20	-19.40	0.740458015267176	7.5	1-7,1788-1782;9-12,1780-1777;13-21,1775-1767	8-8,1781-1781[SIL];x-x,1776-1776[BULt]	(((((((((.((((.(((((((&))))))).))))-)))))))))	GAGGAGAAGUGGAACGAGAAGA&UUUUUUCUUUCC-UUUCUUCUU	4	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN1985_c0_g1_1779_TPlot.pdf
TRINITY_DN1985_c0_g1:1787	si_s88	TRINITY_DN1985_c0_g1	1772	1796	1787	-34.80	-23.60	0.67816091954023	9	3-15,1794-1782;16-21,1777-1772	1-2,1796-1795[UP5];x-x,1781-1778[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	GAAGUGGAACGAGAAGAAGGAAGAG&UCCUUUCUUCUUCUU----CGCUUC	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN1985_c0_g1_1787_TPlot.pdf
TRINITY_DN1985_c0_g1:2195	si_s72	TRINITY_DN1985_c0_g1	2184	2204	2195	-24.10	-15.80	0.655601659751037	8.5	1-5,2204-2200;7-18,2198-2187	6-6,2199-2199[SIL];19-21,2186-2184[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CACGAAAGAAAAGGAUUGGAG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1985_c0_g1_2195_TPlot.pdf
TRINITY_DN1985_c0_g1:2198	si_s69	TRINITY_DN1985_c0_g1	2187	2207	2198	-23.40	-18.90	0.807692307692308	9	3-8,2205-2200;10-21,2198-2187	1-2,2207-2206[UP5];9-9,2199-2199[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GAAAGAAAAGGAUUGGAGGAC&AACUUCUAUUUUUUUUCUUUC	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN1985_c0_g1_2198_TPlot.pdf
TRINITY_DN1985_c0_g1:2199	si_s68	TRINITY_DN1985_c0_g1	2188	2208	2199	-23.10	-15.60	0.675324675324675	10.5	4-9,2205-2200;11-21,2198-2188	1-3,2208-2206[UP5];10-10,2199-2199[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAAGAAAAGGAUUGGAGGACA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN1985_c0_g1_2199_TPlot.pdf
TRINITY_DN1985_c0_g1:2204	si_a75	TRINITY_DN1985_c0_g1	2193	2213	2204	-21.30	-15.10	0.708920187793427	10	1-14,2213-2200	15-21,2199-2193[UP3]	.......((((((((((((((&)))))))))))))).......	AAAGGAUUGGAGGACAAUUUG&CAAAUUGUUUUUCAUUAUUAA	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN1985_c0_g1_2204_TPlot.pdf
TRINITY_DN1985_c0_g1:2205	si_a74	TRINITY_DN1985_c0_g1	2194	2214	2205	-22.20	-15.20	0.684684684684685	9.5	2-15,2213-2200	1-1,2214-2214[UP5];16-21,2199-2194[UP3]	......((((((((((((((.&.))))))))))))))......	AAGGAUUGGAGGACAAUUUGG&UCAAAUUGUUUUUCAUUAUUA	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN1985_c0_g1_2205_TPlot.pdf
TRINITY_DN1985_c0_g1:2206	si_a73	TRINITY_DN1985_c0_g1	2195	2215	2206	-21.90	-16.80	0.767123287671233	8.5	1-16,2215-2200	17-21,2199-2195[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGGAUUGGAGGACAAUUUGGA&UUCAAAUUGUUUUUCAUUAUU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN1985_c0_g1_2206_TPlot.pdf
TRINITY_DN1985_c0_g1:2207	si_a72	TRINITY_DN1985_c0_g1	2196	2216	2207	-21.90	-17.20	0.785388127853881	7.5	1-17,2216-2200	18-21,2199-2196[UP3]	....(((((((((((((((((&)))))))))))))))))....	GGAUUGGAGGACAAUUUGGAG&UUUCAAAUUGUUUUUCAUUAU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN1985_c0_g1_2207_TPlot.pdf
TRINITY_DN1985_c0_g1:2208	si_a71	TRINITY_DN1985_c0_g1	2197	2217	2208	-23.30	-19.90	0.854077253218884	6.5	1-18,2217-2200	19-21,2199-2197[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAUUGGAGGACAAUUUGGAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN1985_c0_g1_2208_TPlot.pdf
TRINITY_DN1985_c0_g1:2209	si_a70	TRINITY_DN1985_c0_g1	2198	2218	2209	-23.90	-19.90	0.832635983263598	6.5	2-19,2217-2200	1-1,2218-2218[UP5];20-21,2199-2198[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AUUGGAGGACAAUUUGGAGGU&UCUUUCAAAUUGUUUUUCAUU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN1985_c0_g1_2209_TPlot.pdf
TRINITY_DN1985_c0_g1:2210	si_a69	TRINITY_DN1985_c0_g1	2199	2219	2210	-24.00	-19.90	0.829166666666667	7.5	3-20,2217-2200	1-2,2219-2218[UP5];21-21,2199-2199[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UUGGAGGACAAUUUGGAGGUC&UUCUUUCAAAUUGUUUUUCAU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN1985_c0_g1_2210_TPlot.pdf
TRINITY_DN1985_c0_g1:2211	si_a68	TRINITY_DN1985_c0_g1	2200	2220	2211	-25.40	-19.80	0.779527559055118	7.5	1-1,2220-2220;4-21,2217-2200	2-3,2219-2218[SIL]	((((((((((((((((((..(&)..))))))))))))))))))	UGGAGGACAAUUUGGAGGUCG&CUUCUUUCAAAUUGUUUUUCA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN1985_c0_g1_2211_TPlot.pdf
TRINITY_DN1985_c0_g1:2212	si_a67	TRINITY_DN1985_c0_g1	2201	2221	2212	-27.20	-18.50	0.680147058823529	8.5	2-2,2220-2220;5-21,2217-2201	1-1,2221-2221[UP5];3-4,2219-2218[SIL]	(((((((((((((((((..(.&.)..)))))))))))))))))	GGAGGACAAUUUGGAGGUCGA&GCUUCUUUCAAAUUGUUUUUC	3	0.999999950567046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN1985_c0_g1_2212_TPlot.pdf
TRINITY_DN1985_c0_g1:783	si_s606	TRINITY_DN1985_c0_g1	771	792	783	-28.20	-19.60	0.695035460992908	7.5	2-14,791-779;17-20,775-772	1-1,792-792[UP5];15-16,778-776[AILt];21-21,771-771[UP3]	.((((...(((((((((((((.&.)))))))))))))-..)))).	GGGAUAAAAGGGAAGAUUCGCC&AGCGAAUCUUUUUU-AAAUCCA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN1985_c0_g1_783_TPlot.pdf
TRINITY_DN19861_c0_g1:4508	si_a357	TRINITY_DN19861_c0_g1	4497	4517	4508	-28.80	-19.60	0.680555555555556	5.5	1-8,4517-4510;10-16,4508-4502;18-21,4500-4497	9-9,4509-4509[SIL];17-17,4501-4501[SIL]	((((.(((((((.((((((((&)))))))).))))))).))))	GGUCAGAUCAAAUUGGGAUUA&UAAUUCUAUUUUGAUCGGAUC	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN19861_c0_g1_4508_TPlot.pdf
TRINITY_DN19861_c0_g1:4765	si_s430	TRINITY_DN19861_c0_g1	4752	4774	4765	-21.30	-14.80	0.694835680751174	9	1-10,4774-4765;11-18,4762-4755	x-x,4764-4763[BULt];19-21,4754-4752[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	UGUUGUGUGAUUUUAUUGUUGUA&UAUAACAAUA--AUUACAUAUUA	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN19861_c0_g1_4765_TPlot.pdf
TRINITY_DN19861_c0_g1:4766	si_s429	TRINITY_DN19861_c0_g1	4753	4775	4766	-21.10	-15.80	0.748815165876777	8	1-11,4775-4765;12-19,4762-4755	x-x,4764-4763[BULt];20-21,4754-4753[UP3]	..((((((((..(((((((((((&)))))))))))--))))))))..	GUUGUGUGAUUUUAUUGUUGUAU&AUAUAACAAUA--AUUACAUAUU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN19861_c0_g1_4766_TPlot.pdf
TRINITY_DN19861_c0_g1:4767	si_s428	TRINITY_DN19861_c0_g1	4754	4776	4767	-21.50	-15.80	0.734883720930233	8	2-12,4775-4765;13-20,4762-4755	1-1,4776-4776[UP5];x-x,4764-4763[BULt];21-21,4754-4754[UP3]	.((((((((..(((((((((((.&.)))))))))))--)))))))).	UUGUGUGAUUUUAUUGUUGUAUU&UAUAUAACAAUA--AUUACAUAU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN19861_c0_g1_4767_TPlot.pdf
TRINITY_DN19868_c0_g1:105	si_s804	TRINITY_DN19868_c0_g1	91	114	105	-27.90	-18.72	0.670967741935484	6	1-13,114-102;16-21,96-91	14-15,101-97[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	GAGAAGAUGAAGACGAAGAUAAAA&UUUUAUCUUCGUU---ACCUUUUC	3	0.999999997898661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN19868_c0_g1_105_TPlot.pdf
TRINITY_DN19868_c0_g1:52	si_s899	TRINITY_DN19868_c0_g1	41	61	52	-28.30	-18.50	0.653710247349823	7.5	2-12,60-50;14-17,48-45	1-1,61-61[UP5];13-13,49-49[SIL];18-21,44-41[UP3]	....((((.(((((((((((.&.))))))))))).))))....	AAAAGAAGGUGAAGAGGAAGA&GCUUUCUCUUCAAUUUCAAUU	4	0.999999999997959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN19868_c0_g1_52_TPlot.pdf
TRINITY_DN1986_c0_g1:118	si_a406	TRINITY_DN1986_c0_g1	107	127	118	-19.80	-12.90	0.651515151515151	5.5	2-12,126-116;14-18,114-110	1-1,127-127[UP5];13-13,115-115[SIL];19-21,109-107[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	GUCAGAUAAAAACAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN1986_c0_g1_118_TPlot.pdf
TRINITY_DN1986_c0_g1:1278	si_a80	TRINITY_DN1986_c0_g1	1267	1287	1278	-22.10	-14.40	0.65158371040724	10	2-16,1286-1272;18-18,1270-1270	1-1,1287-1287[UP5];17-17,1271-1271[SIL];19-21,1269-1267[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	CGCUGUUAAUAGUGGAGGGCC&UGUUUUUCAUUAUUAAGAAAA	2	0.999968566676748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN1986_c0_g1_1278_TPlot.pdf
TRINITY_DN1986_c0_g1:1485	si_a789	TRINITY_DN1986_c0_g1	1474	1492	1485	-24.80	-16.60	0.669354838709677	8	2-5,1491-1488;8-20,1487-1475	1-1,1492-1492[UP5];6-7,x-x[BULq];21-21,1474-1474[UP3]	.(((((((((((((--((((.&.))))..))))))))))))).	UUUGGAAAAUGGAA--GUAGC&UCUAUUUUUCUAUUUUCCAAU	3	0.99999999995944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN1986_c0_g1_1485_TPlot.pdf
TRINITY_DN1986_c0_g1:1487	si_a787	TRINITY_DN1986_c0_g1	1476	1495	1487	-26.30	-17.50	0.665399239543726	8.5	1-3,1495-1493;4-7,1491-1488;10-21,1487-1476	x-x,1492-1492[BULt];8-9,x-x[BULq]	((((((((((((--((((.(((&)))-))))..))))))))))))	UGGAAAAUGGAA--GUAGCAGG&CUU-CUAUUUUUCUAUUUUCCA	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN1986_c0_g1_1487_TPlot.pdf
TRINITY_DN1986_c0_g1:1488	si_a786	TRINITY_DN1986_c0_g1	1477	1496	1488	-26.60	-17.60	0.661654135338346	8.5	1-4,1496-1493;5-8,1491-1488;11-21,1487-1477	x-x,1492-1492[BULt];9-10,x-x[BULq]	(((((((((((--((((.((((&))))-))))..)))))))))))	GGAAAAUGGAA--GUAGCAGGA&UCUU-CUAUUUUUCUAUUUUCC	3	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN1986_c0_g1_1488_TPlot.pdf
TRINITY_DN1986_c0_g1:304	si_s78	TRINITY_DN1986_c0_g1	293	313	304	-26.20	-17.30	0.66030534351145	13.5	7-13,307-301;15-21,299-293	1-6,313-308[UP5];14-14,300-300[SIL]	(((((((.(((((((......&......))))))).)))))))	GGAGGAGCGGAAAGACUUGUU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN1986_c0_g1_304_TPlot.pdf
TRINITY_DN19876_c0_g1:829	si_a24	TRINITY_DN19876_c0_g1	818	838	829	-24.20	-16.60	0.685950413223141	10	1-4,838-835;6-21,833-818	5-5,834-834[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	GUUUUAGGACUGAGGGAGGGU&AUUUAUUUUUAGUUCUAAGAC	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN19876_c0_g1_829_TPlot.pdf
TRINITY_DN1987_c0_g1:1926	si_s6	TRINITY_DN1987_c0_g1	1915	1935	1926	-21.70	-16.90	0.778801843317972	7	2-9,1934-1927;11-20,1925-1916	1-1,1935-1935[UP5];10-10,1926-1926[SIL];21-21,1915-1915[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	GAUGGUGAUGAAAAGUGAUAG&AUAUUACUUAUUAUUACUAUA	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN1987_c0_g1_1926_TPlot.pdf
TRINITY_DN1987_c0_g1:3847	si_s344	TRINITY_DN1987_c0_g1	3835	3856	3847	-33.40	-22.20	0.664670658682635	11	1-11,3856-3846;16-18,3840-3838	12-15,3845-3841[AILt];19-21,3837-3835[UP3]	...(((.....(((((((((((&)))))))))))-....)))...	CACUCUGUCUCCUCCCCGUGGA&UUCACGGGGAG-AUAAAGAAAU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN1987_c0_g1_3847_TPlot.pdf
TRINITY_DN1987_c0_g1:3848	si_s343	TRINITY_DN1987_c0_g1	3836	3857	3848	-33.40	-22.20	0.664670658682635	10	2-12,3856-3846;17-19,3840-3838	1-1,3857-3857[UP5];13-16,3845-3841[AILt];20-21,3837-3836[UP3]	..(((.....(((((((((((.&.)))))))))))-....)))..	ACUCUGUCUCCUCCCCGUGGAG&AUUCACGGGGAG-AUAAAGAAA	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s343_TRINITY_DN1987_c0_g1_3848_TPlot.pdf
TRINITY_DN1987_c0_g1:3933	si_a344	TRINITY_DN1987_c0_g1	3922	3941	3933	-28.50	-20.60	0.72280701754386	9.5	1-8,3941-3934;14-21,3929-3922	9-13,3933-3930[AILq]	((((((((....-((((((((&)))))))).....))))))))	UAGAAUUGCUCG-UUCGGGAC&GUCCCGAAAAUAUUAAUUCUA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN1987_c0_g1_3933_TPlot.pdf
TRINITY_DN1987_c0_g1:3934	si_a343	TRINITY_DN1987_c0_g1	3923	3942	3934	-28.80	-19.30	0.670138888888889	9.5	2-9,3941-3934;15-21,3929-3923	1-1,3942-3942[UP5];10-14,3933-3930[AILq]	(((((((....-((((((((.&.)))))))).....)))))))	AGAAUUGCUCG-UUCGGGACG&UGUCCCGAAAAUAUUAAUUCU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN1987_c0_g1_3934_TPlot.pdf
TRINITY_DN1987_c0_g1:947	si_s71	TRINITY_DN1987_c0_g1	936	956	947	-25.70	-19.30	0.750972762645914	8.5	3-19,954-938	1-2,956-955[UP5];20-21,937-936[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAGAAAGAGAGAGAGUAGACA&CUUCUAUUUUUUUUCUUUCCU	2	0.99958150391399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN1987_c0_g1_947_TPlot.pdf
TRINITY_DN1987_c0_g1:948	si_s70	TRINITY_DN1987_c0_g1	937	957	948	-25.80	-19.30	0.748062015503876	9.5	4-20,954-938	1-3,957-955[UP5];21-21,937-937[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGAAAGAGAGAGAGUAGACAC&ACUUCUAUUUUUUUUCUUUCC	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN1987_c0_g1_948_TPlot.pdf
TRINITY_DN1987_c0_g1:976	si_a554	TRINITY_DN1987_c0_g1	967	985	976	-34.40	-23.80	0.691860465116279	6.5	1-10,985-976;12-13,975-974;15-21,973-967	11-11,x-x[BULq];14-14,x-x[BULq]	(((((((-((-((((((((((&)))))))))).)).)))))))	CAUGGGG-GA-GAAGAGAUGG&CUAUUUCUUUAUCUCCCCGUG	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN1987_c0_g1_976_TPlot.pdf
TRINITY_DN19885_c0_g1:1566	si_a471	TRINITY_DN19885_c0_g1	1555	1575	1566	-21.10	-14.60	0.691943127962085	9	1-3,1575-1573;6-18,1570-1558	4-5,1572-1571[SIL];19-21,1557-1555[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	AUUUAACAAUGAUUGCUGAUU&AAUAUGUAAUUAUUGUUAUAU	0	0.193561567588861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN19885_c0_g1_1566_TPlot.pdf
TRINITY_DN19885_c0_g1:1570	si_a467	TRINITY_DN19885_c0_g1	1559	1579	1570	-21.10	-13.80	0.654028436018957	11.5	4-7,1576-1573;10-21,1570-1559	1-3,1579-1577[UP5];8-9,1572-1571[SIL]	((((((((((((..((((...&...))))..))))))))))))	AACAAUGAUUGCUGAUUGGGA&AUAUAAUAUGUAAUUAUUGUU	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN19885_c0_g1_1570_TPlot.pdf
TRINITY_DN19889_c0_g1:3088	si_a785	TRINITY_DN19889_c0_g1	3077	3099	3088	-25.90	-17.70	0.683397683397683	12	1-9,3099-3091;11-20,3087-3078	10-10,3090-3088[AILt];21-21,3077-3077[UP3]	.((((((((((...(((((((((&)))))))))--.)))))))))).	UGAAGUGGGGAUACGUGGAAGAG&CUCUUCUAU--UUUUCUAUUUUC	4	0.999999999999694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN19889_c0_g1_3088_TPlot.pdf
TRINITY_DN19895_c0_g1:2267	si_s24	TRINITY_DN19895_c0_g1	2256	2276	2267	-27.30	-18.10	0.663003663003663	9	2-8,2275-2269;10-11,2267-2266;13-21,2264-2256	1-1,2276-2276[UP5];9-9,2268-2268[SIL];12-12,2265-2265[SIL]	(((((((((.((.(((((((.&.))))))).)).)))))))))	GGGUUUAGUCGCUGUCGGUAC&AUAUUGAUUGCAACUAAAUCU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN19895_c0_g1_2267_TPlot.pdf
TRINITY_DN19895_c0_g1:7047	si_a639	TRINITY_DN19895_c0_g1	7036	7056	7047	-23.60	-15.50	0.656779661016949	8	1-18,7056-7039	19-21,7038-7036[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAUUGUUAUUUAAAAGAGUUG&CGAUUUUUUUGAGUAAUAUAU	4	0.999999996019627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN19895_c0_g1_7047_TPlot.pdf
TRINITY_DN19895_c0_g1:7174	si_s265	TRINITY_DN19895_c0_g1	7163	7183	7174	-26.10	-17.10	0.655172413793103	7	2-12,7182-7172;15-16,7169-7168;18-19,7166-7165	1-1,7183-7183[UP5];13-14,7171-7170[SIL];17-17,7167-7167[SIL];20-21,7164-7163[UP3]	..((.((..(((((((((((.&.)))))))))))..)).))..	UGGUGGAGGUUUUUGAGUGAC&AUUACUCAAAAAAAUCGACAU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s265_TRINITY_DN19895_c0_g1_7174_TPlot.pdf
TRINITY_DN19895_c1_g2:101	si_s563	TRINITY_DN19895_c1_g2	90	110	101	-30.80	-20.30	0.659090909090909	9	1-5,110-106;8-17,103-94	6-7,105-104[SIL];18-21,93-90[UP3]	....((((((((((..(((((&)))))..))))))))))....	UAUACUUGUCCUGAUUAUAUU&AAUAUUUUCGGGACAAGGAAU	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN19895_c1_g2_101_TPlot.pdf
TRINITY_DN1989_c0_g1:348	si_s883	TRINITY_DN1989_c0_g1	337	357	348	-24.30	-16.76	0.689711934156379	8.5	1-7,357-351;12-21,346-337	8-11,350-347[SIL]	((((((((((....(((((((&)))))))....))))))))))	GAAGCCUAUUCCAAUUUAGUU&AACUAAAAAUAAAUAGGCUUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN1989_c0_g1_348_TPlot.pdf
TRINITY_DN19903_c0_g1:2460	si_s319	TRINITY_DN19903_c0_g1	2449	2469	2460	-31.30	-20.70	0.661341853035144	8.5	1-13,2469-2457	14-21,2456-2449[UP3]	........(((((((((((((&)))))))))))))........	UCAAAAAAGACAAGAAGGACA&UGUCCUUCUUGUUACAAACAU	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN19903_c0_g1_2460_TPlot.pdf
TRINITY_DN1990_c0_g1:512	si_a838	TRINITY_DN1990_c0_g1	501	521	512	-26.50	-19.50	0.735849056603774	9	5-14,517-508;16-20,506-502	1-4,521-518[UP5];15-15,507-507[SIL];21-21,501-501[UP3]	.(((((.((((((((((....&....)))))))))).))))).	UGUUAGGAACUUCUAUUGAUA&AAAAAAUAGAAGUUGCUAACU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN1990_c0_g1_512_TPlot.pdf
TRINITY_DN19913_c0_g1:622	si_a78	TRINITY_DN19913_c0_g1	611	631	622	-22.30	-16.60	0.744394618834081	4	1-16,631-616;19-21,613-611	17-18,615-614[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	UUCACAGUGGUGAAAAACAAU&AUUGUUUUUCAUUAUUAAGAA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN19913_c0_g1_622_TPlot.pdf
TRINITY_DN1991_c0_g1:4406	si_s11	TRINITY_DN1991_c0_g1	4396	4415	4406	-23.60	-15.50	0.656779661016949	6.5	1-4,4415-4412;6-13,4410-4403;15-21,4402-4396	5-5,4411-4411[SIL];14-14,x-x[BULq]	(((((((-((((((((.((((&)))).)))))))).)))))))	GUCGAUG-AGUAAUAGAGAGU&ACUUAUUAUUACUAUAUUGAU	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN1991_c0_g1_4406_TPlot.pdf
TRINITY_DN19950_c0_g1:258	si_s69	TRINITY_DN19950_c0_g1	247	267	258	-23.40	-15.70	0.670940170940171	8.5	5-20,263-248	1-4,267-264[UP5];21-21,247-247[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAAGAAGAAAAAUAGACCUG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN19950_c0_g1_258_TPlot.pdf
TRINITY_DN19950_c0_g1:259	si_s68	TRINITY_DN19950_c0_g1	248	268	259	-23.10	-15.70	0.67965367965368	9.5	6-21,263-248	1-5,268-264[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGAAGAAAAAUAGACCUGG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN19950_c0_g1_259_TPlot.pdf
TRINITY_DN19961_c0_g1:319	si_a701	TRINITY_DN19961_c0_g1	306	328	319	-31.20	-20.40	0.653846153846154	6	1-3,328-326;6-13,323-316;14-21,313-306	4-5,325-324[SIL];x-x,315-314[BULt]	((((((((..((((((((..(((&)))..))))))))--))))))))	AUUUUGGAAGAUGUACCACCUGU&ACAACUGGUACAU--UCCAAAAU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN19961_c0_g1_319_TPlot.pdf
TRINITY_DN19961_c0_g1:320	si_a700	TRINITY_DN19961_c0_g1	307	329	320	-32.80	-22.10	0.673780487804878	6	1-4,329-326;7-14,323-316;15-21,313-307	5-6,325-324[SIL];x-x,315-314[BULt]	(((((((..((((((((..((((&))))..))))))))--)))))))	UUUUGGAAGAUGUACCACCUGUG&CACAACUGGUACAU--UCCAAAA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN19961_c0_g1_320_TPlot.pdf
TRINITY_DN19966_c0_g1:200	si_a785	TRINITY_DN19966_c0_g1	188	209	200	-25.90	-20.00	0.772200772200772	5.5	1-8,209-202;10-16,200-194;18-21,191-188	9-9,201-201[SIL];17-17,193-192[AILt]	((((..(((((((.((((((((&)))))))).)))))))-.))))	GAGACUUAGAGAAUUAGAAGAG&CUCUUCUAUUUUUCUA-UUUUC	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN19966_c0_g1_200_TPlot.pdf
TRINITY_DN19966_c0_g1:201	si_a784	TRINITY_DN19966_c0_g1	190	210	201	-24.70	-18.00	0.728744939271255	7.5	2-9,209-202;11-17,200-194	1-1,210-210[UP5];10-10,201-201[SIL];18-21,193-190[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	GACUUAGAGAAUUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN19966_c0_g1_201_TPlot.pdf
TRINITY_DN19966_c0_g1:202	si_a783	TRINITY_DN19966_c0_g1	191	211	202	-24.70	-18.00	0.728744939271255	8.5	3-10,209-202;12-18,200-194	1-2,211-210[UP5];11-11,201-201[SIL];19-21,193-191[UP3]	...(((((((.((((((((..&..)))))))).)))))))...	ACUUAGAGAAUUAGAAGAGAA&AACUCUUCUAUUUUUCUAUUU	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN19966_c0_g1_202_TPlot.pdf
TRINITY_DN19966_c0_g1:203	si_a782	TRINITY_DN19966_c0_g1	192	212	203	-26.40	-18.00	0.681818181818182	9.5	4-11,209-202;13-19,200-194	1-3,212-210[UP5];12-12,201-201[SIL];20-21,193-192[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	CUUAGAGAAUUAGAAGAGAAA&CAACUCUUCUAUUUUUCUAUU	0	0.267787898355571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN19966_c0_g1_203_TPlot.pdf
TRINITY_DN19966_c0_g1:204	si_a781	TRINITY_DN19966_c0_g1	193	213	204	-27.40	-18.00	0.656934306569343	9.5	5-12,209-202;14-20,200-194	1-4,213-210[UP5];13-13,201-201[SIL];21-21,193-193[UP3]	.(((((((.((((((((....&....)))))))).))))))).	UUAGAGAAUUAGAAGAGAAAA&UCAACUCUUCUAUUUUUCUAU	3	0.999999774367657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN19966_c0_g1_204_TPlot.pdf
TRINITY_DN19966_c0_g1:205	si_a780	TRINITY_DN19966_c0_g1	194	214	205	-27.30	-17.90	0.655677655677656	10.5	6-13,209-202;15-21,200-194	1-5,214-210[UP5];14-14,201-201[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	UAGAGAAUUAGAAGAGAAAAG&UUCAACUCUUCUAUUUUUCUA	2	0.999966129464633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN19966_c0_g1_205_TPlot.pdf
TRINITY_DN1996_c0_g1:867	si_a325	TRINITY_DN1996_c0_g1	856	875	867	-25.90	-17.92	0.691891891891892	11	1-5,875-871;10-20,867-857	6-9,870-868[AILq];21-21,856-856[UP3]	.(((((((((((...-(((((&)))))....))))))))))).	CCAAGGAAUGAGUCU-UCAUG&CAUGAUUUUUUUAUUCCUUGU	2	0.992006333570158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN1996_c0_g1_867_TPlot.pdf
TRINITY_DN19984_c0_g1:210	si_s78	TRINITY_DN19984_c0_g1	195	219	210	-26.20	-17.30	0.66030534351145	8.5	1-12,219-208;13-15,204-202;16-21,200-195	x-x,207-205[BULt];x-x,201-201[BULt]	((((((.(((...((((((((((((&))))))))))))---)))-))))))	AGAAGAUGAGCAAGAAAGAAAAAGA&UUUUUUUCUUUC---CUU-UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN19984_c0_g1_210_TPlot.pdf
TRINITY_DN1998_c0_g1:1086	si_s72	TRINITY_DN1998_c0_g1	1075	1095	1086	-24.10	-15.80	0.655601659751037	7	1-4,1095-1092;6-15,1090-1081;18-21,1078-1075	5-5,1091-1091[SIL];16-17,1080-1079[SIL]	((((..((((((((((.((((&)))).))))))))))..))))	GAGGCUAGAAAGAGAAAAGAG&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN1998_c0_g1_1086_TPlot.pdf
TRINITY_DN1998_c0_g1:2548	si_a23	TRINITY_DN1998_c0_g1	2537	2557	2548	-22.80	-15.70	0.68859649122807	8.5	4-17,2554-2541;19-20,2539-2538	1-3,2557-2555[UP5];18-18,2540-2540[SIL];21-21,2537-2537[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	ACUAGGAACUGAAAAUAAGAA&UAUUUAUUUUUAGUUCUAAGA	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN1998_c0_g1_2548_TPlot.pdf
TRINITY_DN1998_c0_g1:2810	si_s2	TRINITY_DN1998_c0_g1	2799	2819	2810	-20.50	-13.60	0.663414634146341	7.5	1-5,2819-2815;7-19,2813-2801	6-6,2814-2814[SIL];20-21,2800-2799[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	ACAAUGGUGAGUGAUCUAGAA&UUUUAUAUUACUUAUUAUUAC	4	0.999989419620488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN1998_c0_g1_2810_TPlot.pdf
TRINITY_DN1998_c0_g1:2811	si_s1	TRINITY_DN1998_c0_g1	2800	2820	2811	-18.70	-14.50	0.775401069518717	6.5	1-6,2820-2815;8-20,2813-2801	7-7,2814-2814[SIL];21-21,2800-2800[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	CAAUGGUGAGUGAUCUAGAAA&UUUUUAUAUUACUUAUUAUUA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN1998_c0_g1_2811_TPlot.pdf
TRINITY_DN1998_c0_g1:4791	si_s191	TRINITY_DN1998_c0_g1	4780	4800	4791	-26.60	-19.70	0.740601503759398	7.5	4-5,4797-4796;7-21,4794-4780	1-3,4800-4798[UP5];6-6,4795-4795[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	UGCAUUCCAAAAUAAACGAGU&UAACGAUUAUUUUGGAAUGUA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN1998_c0_g1_4791_TPlot.pdf
TRINITY_DN1998_c0_g1:4792	si_s190	TRINITY_DN1998_c0_g1	4781	4801	4792	-28.00	-18.60	0.664285714285714	9.5	5-6,4797-4796;8-21,4794-4781	1-4,4801-4798[UP5];7-7,4795-4795[SIL]	((((((((((((((.((....&....)).))))))))))))))	GCAUUCCAAAAUAAACGAGUU&GUAACGAUUAUUUUGGAAUGU	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN1998_c0_g1_4792_TPlot.pdf
TRINITY_DN1998_c0_g1:5728	si_a784	TRINITY_DN1998_c0_g1	5719	5737	5728	-24.70	-16.30	0.659919028340081	9.5	2-10,5736-5728;13-19,5727-5721	1-1,5737-5737[UP5];11-12,x-x[BULq];20-21,5720-5719[UP3]	..(((((((--(((((((((.&.)))))))))..)))))))..	CCGGUAGAG--GUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN1998_c0_g1_5728_TPlot.pdf
TRINITY_DN19994_c0_g2:254	si_a403	TRINITY_DN19994_c0_g2	243	263	254	-22.00	-14.70	0.668181818181818	13.5	7-21,257-243	1-6,263-258[UP5]	(((((((((((((((......&......)))))))))))))))	AAAUGUAAACGAGACUGACAA&AGAAUUGUUUUGUUUAUAUUU	4	0.99999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN19994_c0_g2_254_TPlot.pdf
TRINITY_DN199_c0_g1:769	si_s80	TRINITY_DN199_c0_g1	759	778	769	-28.20	-18.50	0.656028368794326	6	1-14,778-765;16-20,764-760	15-15,x-x[BULq];21-21,759-759[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	CGAGAA-AAAGGAGGGAAGAG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN199_c0_g1_769_TPlot.pdf
TRINITY_DN199_c0_g1:771	si_s78	TRINITY_DN199_c0_g1	761	780	771	-26.20	-17.40	0.66412213740458	8	3-16,778-765;18-21,764-761	1-2,780-779[UP5];17-17,x-x[BULq]	((((-((((((((((((((..&..)))))))))))))).))))	AGAA-AAAGGAGGGAAGAGCG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN199_c0_g1_771_TPlot.pdf
TRINITY_DN199_c0_g1:777	si_s72	TRINITY_DN199_c0_g1	766	786	777	-24.10	-16.50	0.684647302904564	8.5	1-4,786-783;6-7,781-780;9-21,778-766	5-5,782-782[SIL];8-8,779-779[SIL]	(((((((((((((.((.((((&)))).)).)))))))))))))	AAGGAGGGAAGAGCGAAAGAG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN199_c0_g1_777_TPlot.pdf
TRINITY_DN199_c0_g1:780	si_s74	TRINITY_DN199_c0_g1	767	789	780	-25.00	-16.50	0.66	10.5	2-10,788-780;11-20,777-768	1-1,789-789[UP5];x-x,779-778[BULt];21-21,767-767[UP3]	.((((((((((..(((((((((.&.)))))))))--)))))))))).	AGGAGGGAAGAGCGAAAGAGUAA&CUAUUUUUUU--UCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN199_c0_g1_780_TPlot.pdf
TRINITY_DN199_c0_g1:781	si_a498	TRINITY_DN199_c0_g1	769	795	781	-33.50	-22.70	0.677611940298507	13.5	1-8,795-788;9-12,782-779;13-20,777-770	x-x,787-783[BULt];x-x,778-778[BULt];21-21,769-769[UP3]	.((((((((.((((.....((((((((&))))))))-----))))-)))))))).	GAGGGAAGAGCGAAAGAGUAAACGACA&UGUCGUUU-----UUCG-UCUUCCUUG	3	0.999999997940772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN199_c0_g1_781_TPlot.pdf
TRINITY_DN199_c0_g1:782	si_a497	TRINITY_DN199_c0_g1	770	796	782	-32.00	-22.20	0.69375	12.5	2-9,795-788;10-13,782-779;14-21,777-770	1-1,796-796[UP5];x-x,787-783[BULt];x-x,778-778[BULt]	((((((((.((((.....((((((((.&.))))))))-----))))-))))))))	AGGGAAGAGCGAAAGAGUAAACGACAC&AUGUCGUUU-----UUCG-UCUUCCUU	3	0.999999993730206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN199_c0_g1_782_TPlot.pdf
TRINITY_DN19_c0_g1:1753	si_a301	TRINITY_DN19_c0_g1	1742	1762	1753	-27.80	-18.30	0.658273381294964	11.5	4-9,1759-1754;12-19,1751-1744	1-3,1762-1760[UP5];10-11,1753-1752[SIL];20-21,1743-1742[UP3]	..((((((((..((((((...&...))))))..))))))))..	CUGUCCAAGCUUAUCUUUGAU&AAAAAAGAUUCGCUUGGAUUU	3	0.999997821875828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN19_c0_g1_1753_TPlot.pdf
TRINITY_DN20008_c0_g1:1715	si_a464	TRINITY_DN20008_c0_g1	1704	1724	1715	-19.60	-14.20	0.724489795918367	8.5	3-17,1722-1708	1-2,1724-1723[UP5];18-21,1707-1704[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUCUGUUACGUAUUAUAUAAA&UAUAUAUAAUAUGUAAUUAUU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN20008_c0_g1_1715_TPlot.pdf
TRINITY_DN20008_c0_g1:1718	si_a461	TRINITY_DN20008_c0_g1	1707	1728	1718	-21.50	-15.70	0.730232558139535	7	1-4,1728-1725;6-20,1722-1708	5-5,1724-1723[AILt];21-21,1707-1707[UP3]	.(((((((((((((((..((((&))))-.))))))))))))))).	UGUUACGUAUUAUAUAAAAGCA&UGUU-AUAUAUAAUAUGUAAUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN20008_c0_g1_1718_TPlot.pdf
TRINITY_DN20008_c0_g1:1719	si_a460	TRINITY_DN20008_c0_g1	1708	1729	1719	-21.60	-16.40	0.759259259259259	6	1-5,1729-1725;7-21,1722-1708	6-6,1724-1723[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	GUUACGUAUUAUAUAAAAGCAA&UUGUU-AUAUAUAAUAUGUAAU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN20008_c0_g1_1719_TPlot.pdf
TRINITY_DN20008_c0_g1:1720	si_a459	TRINITY_DN20008_c0_g1	1709	1730	1720	-23.20	-18.20	0.78448275862069	5.5	1-6,1730-1725;8-21,1722-1709	7-7,1724-1723[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	UUACGUAUUAUAUAAAAGCAAC&GUUGUU-AUAUAUAAUAUGUAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN20008_c0_g1_1720_TPlot.pdf
TRINITY_DN20008_c0_g1:615	si_a75	TRINITY_DN20008_c0_g1	604	627	615	-21.30	-14.90	0.699530516431925	13	1-5,627-623;6-19,619-606	x-x,622-620[BULt];20-21,605-604[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	ACGGUAAUGGAGAACGUACGUUUG&CAAAU---UGUUUUUCAUUAUUAA	3	0.999998837114586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN20008_c0_g1_615_TPlot.pdf
TRINITY_DN2000_c0_g1:1513	si_s85	TRINITY_DN2000_c0_g1	1499	1522	1513	-33.80	-22.50	0.665680473372781	8	2-13,1521-1510;14-16,1508-1506;17-21,1503-1499	1-1,1522-1522[UP5];x-x,1509-1509[BULt];x-x,1505-1504[BULt]	(((((..(((.((((((((((((.&.))))))))))))-)))--)))))	GCGAAACGAACGGAGAGAGGGGAU&CUUUCCUUUCUUC-UUC--UUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2000_c0_g1_1513_TPlot.pdf
TRINITY_DN2000_c0_g1:1773	si_a670	TRINITY_DN2000_c0_g1	1763	1783	1773	-32.30	-24.00	0.743034055727554	7	1-6,1783-1778;7-17,1776-1766;19-21,1765-1763	x-x,1777-1777[BULt];18-18,x-x[BULq]	(((-(((((((((((.((((((&))))))-))))))))))).)))	GCG-GAGUGGGGGAUCCAGUAG&CUAUUG-AUUCCUUAUUCACGC	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a670_TRINITY_DN2000_c0_g1_1773_TPlot.pdf
TRINITY_DN2000_c0_g1:1820	si_a326	TRINITY_DN2000_c0_g1	1809	1829	1820	-26.20	-17.10	0.652671755725191	10	3-6,1827-1824;8-20,1822-1810	1-2,1829-1828[UP5];7-7,1823-1823[SIL];21-21,1809-1809[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AGCAAGGGAUGAAAUAGUUGC&AUGAUUUUUUUAUUCCUUGUC	4	0.999999999998901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2000_c0_g1_1820_TPlot.pdf
TRINITY_DN2000_c0_g1:1821	si_a325	TRINITY_DN2000_c0_g1	1810	1832	1821	-25.90	-18.14	0.7003861003861	14	1-4,1832-1829;9-21,1822-1810	5-8,1828-1823[AILt]	(((((((((((((......((((&))))--....)))))))))))))	GCAAGGGAUGAAAUAGUUGCAUG&CAUG--AUUUUUUUAUUCCUUGU	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2000_c0_g1_1821_TPlot.pdf
TRINITY_DN20024_c0_g1:268	si_s876	TRINITY_DN20024_c0_g1	257	277	268	-24.20	-16.50	0.681818181818182	13	1-11,277-267	12-21,266-257[UP3]	..........(((((((((((&)))))))))))..........	UACUUAUAAAGGUUCUGAGAC&GUCUUAGAACUAAAAAUAAAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN20024_c0_g1_268_TPlot.pdf
TRINITY_DN20026_c0_g1:264	si_a488	TRINITY_DN20026_c0_g1	253	273	264	-26.40	-18.60	0.704545454545455	4.5	1-11,273-263;14-21,260-253	12-13,262-261[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GAAAAAUGUGAUGUUCUAUAU&AUAUAGAAUAUGUCGUUUUUC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN20026_c0_g1_264_TPlot.pdf
TRINITY_DN20026_c0_g1:265	si_a487	TRINITY_DN20026_c0_g1	254	274	265	-24.80	-16.90	0.681451612903226	3.5	1-12,274-263;15-21,260-254	13-14,262-261[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AAAAAUGUGAUGUUCUAUAUA&UAUAUAGAAUAUGUCGUUUUU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN20026_c0_g1_265_TPlot.pdf
TRINITY_DN2002_c0_g1:1267	si_s73	TRINITY_DN2002_c0_g1	1256	1276	1267	-24.00	-16.80	0.7	11	6-21,1271-1256	1-5,1276-1272[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGGAAAGGAAAAAGCUUCG&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2002_c0_g1_1267_TPlot.pdf
TRINITY_DN2002_c0_g1:1282	si_s71	TRINITY_DN2002_c0_g1	1258	1291	1282	-25.70	-17.90	0.696498054474708	26.5	1-10,1291-1282;11-21,1268-1258	x-x,1281-1269[BULt]	(((((((((((.............((((((((((&))))))))))-------------)))))))))))	AGGAAAGGAAAAAGCUUCGACGGCAAAAUAGAAG&CUUCUAUUUU-------------UUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2002_c0_g1_1282_TPlot.pdf
TRINITY_DN2002_c0_g1:1304	si_s77	TRINITY_DN2002_c0_g1	1288	1313	1304	-25.50	-17.30	0.67843137254902	13.5	4-14,1310-1300;15-21,1294-1288	1-3,1313-1311[UP5];x-x,1299-1295[BULt]	(((((((.....(((((((((((...&...)))))))))))-----)))))))	GAAGAGAAAUGUGGAAGGAGGAACAA&UUUUUUUUCUUUCC-----UUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2002_c0_g1_1304_TPlot.pdf
TRINITY_DN2002_c0_g1:1467	si_s801	TRINITY_DN2002_c0_g1	1455	1477	1467	-28.20	-18.50	0.656028368794326	8	1-6,1477-1472;7-15,1470-1462;18-21,1458-1455	x-x,1471-1471[BULt];16-17,1461-1459[AILt]	((((...(((((((((.((((((&))))))-)))))))))-..))))	AAGGCUCACGAAGAUGCGAAUGC&GUAUUU-UAUCUUCGU-UACCUU	3	0.999999922832203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN2002_c0_g1_1467_TPlot.pdf
TRINITY_DN2002_c0_g1:1473	si_s796	TRINITY_DN2002_c0_g1	1461	1481	1473	-30.30	-19.90	0.656765676567657	8	1-4,1481-1478;6-11,1477-1472;12-20,1470-1462	5-5,x-x[BULq];x-x,1471-1471[BULt];21-21,1461-1461[UP3]	.(((((((((.((((((-((((&)))).))))))-))))))))).	CACGAAGAUGCGAAUGC-AGCU&AGCUCGUAUUU-UAUCUUCGUU	3	0.999999815717802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2002_c0_g1_1473_TPlot.pdf
TRINITY_DN2002_c0_g1:1474	si_s795	TRINITY_DN2002_c0_g1	1462	1482	1474	-30.30	-20.10	0.663366336633663	7.5	2-5,1481-1478;7-12,1477-1472;13-21,1470-1462	1-1,1482-1482[UP5];6-6,x-x[BULq];x-x,1471-1471[BULt]	(((((((((.((((((-((((.&.)))).))))))-)))))))))	ACGAAGAUGCGAAUGC-AGCUC&AAGCUCGUAUUU-UAUCUUCGU	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN2002_c0_g1_1474_TPlot.pdf
TRINITY_DN20031_c0_g1:1516	si_a456	TRINITY_DN20031_c0_g1	1505	1525	1516	-22.80	-16.20	0.710526315789474	10.5	2-10,1524-1516;13-21,1513-1505	1-1,1525-1525[UP5];11-12,1515-1514[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	CAUGUUAUAGUUGGCGAUGAA&AUUGUUGUUAUAUAUAAUAUG	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN20031_c0_g1_1516_TPlot.pdf
TRINITY_DN20033_c0_g2:5518	si_s628	TRINITY_DN20033_c0_g2	5507	5526	5518	-35.40	-23.40	0.661016949152542	9.5	1-3,5526-5524;5-8,5523-5520;10-18,5518-5510	4-4,x-x[BULq];9-9,5519-5519[SIL];19-21,5509-5507[UP3]	...(((((((((.((((-(((&))).)))).)))))))))...	GCCCGCCUGCGGCAAGG-CGC&GCGAUCUUUUCGUAGGCGUUU	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN20033_c0_g2_5518_TPlot.pdf
TRINITY_DN20037_c0_g1:65	si_a510	TRINITY_DN20037_c0_g1	52	74	65	-37.00	-25.40	0.686486486486486	11	3-11,72-64;13-20,60-53	1-2,74-73[UP5];12-12,63-61[AILt];21-21,52-52[UP3]	.((((((((...(((((((((..&..)))))))))--.)))))))).	GGCCUUACAGACUCCAAGGGAUC&UCUUCCUUGGA--AUGUAAGGCG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN20037_c0_g1_65_TPlot.pdf
TRINITY_DN20039_c0_g1:3230	si_a415	TRINITY_DN20039_c0_g1	3218	3239	3230	-18.10	-11.90	0.657458563535912	7	3-12,3237-3228;13-21,3226-3218	1-2,3239-3238[UP5];x-x,3227-3227[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	UUGUAUUUAUUUUGAAUAUAUU&UUUAUAUUUAAA-UAAAUAUAG	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN20039_c0_g1_3230_TPlot.pdf
TRINITY_DN20039_c0_g1:3231	si_a414	TRINITY_DN20039_c0_g1	3219	3240	3231	-18.10	-12.10	0.668508287292818	6.5	1-1,3240-3240;4-13,3237-3228;14-21,3226-3219	2-3,3239-3238[SIL];x-x,3227-3227[BULt]	((((((((.((((((((((..(&)..))))))))))-))))))))	UGUAUUUAUUUUGAAUAUAUUC&GUUUAUAUUUAAA-UAAAUAUA	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN20039_c0_g1_3231_TPlot.pdf
TRINITY_DN20039_c0_g1:457	si_s603	TRINITY_DN20039_c0_g1	446	466	457	-27.20	-17.80	0.654411764705882	6.5	1-6,466-461;9-16,458-451;18-21,449-446	7-8,460-459[SIL];17-17,450-450[SIL]	((((.((((((((..((((((&))))))..)))))))).))))	AUUUCAGAAGGAUCAGCUUGG&CCAAGCGAAUCUUUUUUAAAU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN20039_c0_g1_457_TPlot.pdf
TRINITY_DN20039_c0_g1:463	si_s618	TRINITY_DN20039_c0_g1	451	472	463	-30.30	-20.50	0.676567656765677	7	1-5,472-468;7-12,466-461;13-20,459-452	6-6,467-467[SIL];x-x,460-460[BULt];21-21,451-451[UP3]	.((((((((.((((((.(((((&))))).))))))-)))))))).	AGAAGGAUCAGCUUGGCUUUGA&UUAAAUCCAAGC-GAUCUUUUC	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN20039_c0_g1_463_TPlot.pdf
TRINITY_DN20039_c0_g1:495	si_s86	TRINITY_DN20039_c0_g1	485	510	495	-32.90	-21.40	0.650455927051672	15	1-7,510-504;8-17,497-488;19-21,487-485	x-x,503-498[BULt];18-18,x-x[BULq]	(((-((((((((((......(((((((&)))))))------)))))))))).)))	GGC-AGGAAGAAGACAACAUGAGGAAA&UUUCCUU------UCUUCUUCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN20039_c0_g1_495_TPlot.pdf
TRINITY_DN20039_c0_g1:515	si_s73	TRINITY_DN20039_c0_g1	503	524	515	-24.00	-15.80	0.658333333333333	8.5	1-11,524-514;14-20,510-504	12-13,513-511[AILt];21-21,503-503[UP3]	.(((((((...(((((((((((&)))))))))))-..))))))).	UGAGGAAAAUUAAGAAAGUAGA&UCUAUUUUUUU-UCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN20039_c0_g1_515_TPlot.pdf
TRINITY_DN20039_c0_g2:76	si_s803	TRINITY_DN20039_c0_g2	64	85	76	-26.00	-17.72	0.681538461538462	7.5	2-12,84-74;16-21,69-64	1-1,85-85[UP5];13-15,73-70[AILt]	((((((....(((((((((((.&.)))))))))))-...))))))	AGAAGGACGUCGAAGAUAAGAA&AUUUUAUCUUCG-UUACCUUUU	4	0.999999997766903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN20039_c0_g2_76_TPlot.pdf
TRINITY_DN2003_c0_g1:2037	si_a331	TRINITY_DN2003_c0_g1	2026	2046	2037	-30.60	-20.40	0.666666666666667	9	1-7,2046-2040;9-17,2038-2030	8-8,2039-2039[SIL];18-21,2029-2026[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AUACGGACAAGGAUUAGGAGA&UUUUUUAUUCCUUGUCCCGAA	3	0.999993501102596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2003_c0_g1_2037_TPlot.pdf
TRINITY_DN2003_c0_g1:2038	si_a330	TRINITY_DN2003_c0_g1	2027	2047	2038	-30.50	-21.30	0.698360655737705	8	1-8,2047-2040;10-18,2038-2030	9-9,2039-2039[SIL];19-21,2029-2027[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UACGGACAAGGAUUAGGAGAA&UUUUUUUAUUCCUUGUCCCGA	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN2003_c0_g1_2038_TPlot.pdf
TRINITY_DN2003_c0_g1:2039	si_a329	TRINITY_DN2003_c0_g1	2028	2048	2039	-29.60	-21.30	0.719594594594595	8	2-9,2047-2040;11-19,2038-2030	1-1,2048-2048[UP5];10-10,2039-2039[SIL];20-21,2029-2028[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	ACGGACAAGGAUUAGGAGAAG&AUUUUUUUAUUCCUUGUCCCG	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2003_c0_g1_2039_TPlot.pdf
TRINITY_DN2003_c0_g1:2040	si_a328	TRINITY_DN2003_c0_g1	2029	2049	2040	-30.10	-21.30	0.707641196013289	9	3-10,2047-2040;12-20,2038-2030	1-2,2049-2048[UP5];11-11,2039-2039[SIL];21-21,2029-2029[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CGGACAAGGAUUAGGAGAAGA&GAUUUUUUUAUUCCUUGUCCC	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2003_c0_g1_2040_TPlot.pdf
TRINITY_DN2003_c0_g1:2045	si_a327	TRINITY_DN2003_c0_g1	2030	2054	2045	-28.40	-22.06	0.776760563380282	15	1-10,2054-2045;13-21,2038-2030	11-12,2044-2039[AILt]	(((((((((......((((((((((&))))))))))----..)))))))))	GGACAAGGAUUAGGAGAAGAAGUCA&UGAUUUUUUU----AUUCCUUGUCC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2003_c0_g1_2045_TPlot.pdf
TRINITY_DN2003_c0_g1:2046	si_a326	TRINITY_DN2003_c0_g1	2031	2055	2046	-26.20	-19.96	0.761832061068702	14	1-11,2055-2045;14-21,2038-2031	12-13,2044-2039[AILt]	((((((((......(((((((((((&)))))))))))----..))))))))	GACAAGGAUUAGGAGAAGAAGUCAU&AUGAUUUUUUU----AUUCCUUGUC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2003_c0_g1_2046_TPlot.pdf
TRINITY_DN2003_c0_g1:2047	si_a325	TRINITY_DN2003_c0_g1	2032	2056	2047	-25.90	-19.06	0.735907335907336	13	1-12,2056-2045;15-21,2038-2032	13-14,2044-2039[AILt]	(((((((......((((((((((((&))))))))))))----..)))))))	ACAAGGAUUAGGAGAAGAAGUCAUG&CAUGAUUUUUUU----AUUCCUUGU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2003_c0_g1_2047_TPlot.pdf
TRINITY_DN2003_c0_g1:2048	si_a324	TRINITY_DN2003_c0_g1	2033	2057	2048	-27.50	-17.96	0.653090909090909	9.5	2-13,2056-2045;16-21,2038-2033	1-1,2057-2057[UP5];14-15,2044-2039[AILt]	((((((......((((((((((((.&.))))))))))))----..))))))	CAAGGAUUAGGAGAAGAAGUCAUGC&CCAUGAUUUUUUU----AUUCCUUG	3	0.999999618066212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN2003_c0_g1_2048_TPlot.pdf
TRINITY_DN2003_c0_g1:403	si_a637	TRINITY_DN2003_c0_g1	387	412	403	-25.80	-16.90	0.655038759689922	17	1-11,412-402;12-16,396-392	x-x,401-397[BULt];17-21,391-387[UP3]	.....(((((.....(((((((((((&)))))))))))-----))))).....	UGGGCACUCAAGGUAGAGAAAUCGAC&GUCGAUUUUUU-----UGAGUAAUAU	3	0.99999999998003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2003_c0_g1_403_TPlot.pdf
TRINITY_DN2003_c0_g1:404	si_a636	TRINITY_DN2003_c0_g1	388	413	404	-26.30	-17.70	0.673003802281369	16	1-12,413-402;13-17,396-392	x-x,401-397[BULt];18-21,391-388[UP3]	....(((((.....((((((((((((&))))))))))))-----)))))....	GGGCACUCAAGGUAGAGAAAUCGACA&UGUCGAUUUUUU-----UGAGUAAUA	3	0.999999787662861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2003_c0_g1_404_TPlot.pdf
TRINITY_DN2003_c0_g1:405	si_a635	TRINITY_DN2003_c0_g1	389	414	405	-26.10	-18.70	0.716475095785441	9.5	1-13,414-402;14-18,396-392	x-x,401-397[BULt];19-21,391-389[UP3]	...(((((.....(((((((((((((&)))))))))))))-----)))))...	GGCACUCAAGGUAGAGAAAUCGACAU&AUGUCGAUUUUUU-----UGAGUAAU	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2003_c0_g1_405_TPlot.pdf
TRINITY_DN20043_c0_g1:39	si_a759	TRINITY_DN20043_c0_g1	28	49	39	-32.60	-23.30	0.714723926380368	7.5	2-3,48-47;4-17,45-32;19-20,30-29	1-1,49-49[UP5];x-x,46-46[BULt];18-18,31-31[SIL];21-21,28-28[UP3]	.((.((((((((((((((.((.&.))-)))))))))))))).)).	CCAUUCAGAGGCCCAAAGAGAA&CUC-CUUUGGGUUUUUGAUUGA	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN20043_c0_g1_39_TPlot.pdf
TRINITY_DN2004_c0_g1:2792	si_s549	TRINITY_DN2004_c0_g1	2781	2801	2792	-20.50	-13.50	0.658536585365854	8	2-14,2800-2788	1-1,2801-2801[UP5];15-21,2787-2781[UP3]	.......(((((((((((((.&.))))))))))))).......	UGUUUGCAAUUCUAUUUUGAA&AUCAAAAUAGAAUUAAUAUUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN2004_c0_g1_2792_TPlot.pdf
TRINITY_DN20054_c0_g1:288	si_a454	TRINITY_DN20054_c0_g1	276	297	288	-21.30	-15.40	0.723004694835681	5	2-10,296-288;11-21,286-276	1-1,297-297[UP5];x-x,287-287[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	UGUUAUGUAUAUAUAACAAUUC&UAAUUGUUGU-UAUAUAUAAUA	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN20054_c0_g1_288_TPlot.pdf
TRINITY_DN2005_c0_g1:2037	si_a644	TRINITY_DN2005_c0_g1	2026	2049	2037	-29.30	-19.32	0.65938566552901	13	1-9,2049-2041;12-21,2035-2026	10-11,2040-2036[AILt]	((((((((((.....(((((((((&)))))))))---..))))))))))	UCCUGGUAUACAUCAACUCAGAGA&UUUUUGAGU---AAUAUAUCGGGA	2	0.954345126081691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN2005_c0_g1_2037_TPlot.pdf
TRINITY_DN2005_c0_g1:2277	si_s797	TRINITY_DN2005_c0_g1	2265	2289	2277	-30.00	-19.72	0.657333333333333	12	1-6,2289-2284;9-15,2278-2272;16-21,2270-2265	7-8,2283-2279[AILt];x-x,2271-2271[BULt]	((((((.(((((((.....((((((&))))))---..)))))))-))))))	UGACGACAGGUAAAGGUAGACGAGC&GCUCGU---AUUUUAUCU-UCGUUA	2	0.999986002637681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2005_c0_g1_2277_TPlot.pdf
TRINITY_DN2005_c0_g1:398	si_a452	TRINITY_DN2005_c0_g1	387	407	398	-23.00	-15.10	0.656521739130435	12	1-2,407-406;5-16,403-392	3-4,405-404[SIL];17-21,391-387[UP3]	.....((((((((((((..((&))..)))))))))))).....	CAAUUUAUAGCAGCAGUGUUC&GAUAAUUGUUGUUAUAUAUAA	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN2005_c0_g1_398_TPlot.pdf
TRINITY_DN2005_c1_g1:416	si_a410	TRINITY_DN2005_c1_g1	405	425	416	-17.80	-11.80	0.662921348314607	9	2-8,424-418;11-21,415-405	1-1,425-425[UP5];9-10,417-416[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	UUUGUUUAGAUCGAGGCGAAU&UUUUGUUUAUAUUUAAAUAAA	2	0.999999998453424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2005_c1_g1_416_TPlot.pdf
TRINITY_DN20063_c0_g1:13	si_s785	TRINITY_DN20063_c0_g1	2	22	13	-30.40	-20.04	0.659210526315789	12	1-5,22-18;11-20,12-3	6-10,17-13[SIL];21-21,2-2[UP3]	.((((((((((.....(((((&))))).....)))))))))).	UGUGCGAGCUUUGCCGAUAGC&GCUAUAAAACAAGCUCGUAUU	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s785_TRINITY_DN20063_c0_g1_13_TPlot.pdf
TRINITY_DN20063_c0_g1:14	si_s784	TRINITY_DN20063_c0_g1	3	23	14	-31.10	-20.24	0.6508038585209	12	2-6,22-18;12-21,12-3	1-1,23-23[UP5];7-11,17-13[SIL]	((((((((((.....(((((.&.))))).....))))))))))	GUGCGAGCUUUGCCGAUAGCU&UGCUAUAAAACAAGCUCGUAU	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s784_TRINITY_DN20063_c0_g1_14_TPlot.pdf
TRINITY_DN20063_c0_g2:3044	si_a339	TRINITY_DN20063_c0_g2	3033	3054	3044	-31.10	-21.20	0.681672025723473	7	1-5,3054-3050;7-9,3048-3046;10-15,3044-3039;17-21,3037-3033	6-6,3049-3049[SIL];x-x,3045-3045[BULt];16-16,3038-3038[SIL]	(((((.((((((.(((.(((((&))))).)))-)))))).)))))	UUGGUUUUUUCGUGGAGGAGGA&UCCUUGUCC-CGAAAAUAUUAA	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a339_TRINITY_DN20063_c0_g2_3044_TPlot.pdf
TRINITY_DN20063_c0_g2:3046	si_a338	TRINITY_DN20063_c0_g2	3034	3055	3046	-31.10	-20.70	0.665594855305466	7.5	1-6,3055-3050;8-10,3048-3046;11-16,3044-3039;18-21,3037-3034	7-7,3049-3049[SIL];x-x,3045-3045[BULt];17-17,3038-3038[SIL]	((((.((((((.(((.((((((&)))))).)))-)))))).))))	UGGUUUUUUCGUGGAGGAGGAG&UUCCUUGUCC-CGAAAAUAUUA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a338_TRINITY_DN20063_c0_g2_3046_TPlot.pdf
TRINITY_DN2006_c0_g1:802	si_a782	TRINITY_DN2006_c0_g1	791	812	802	-26.40	-17.20	0.651515151515151	6	1-4,812-809;5-16,807-796;18-21,794-791	x-x,808-808[BULt];17-17,795-795[SIL]	((((.((((((((((((.((((&))))-)))))))))))).))))	GAUGUAGAGAUAGGAGAUGUUG&CAAC-UCUUCUAUUUUUCUAUU	2	0.999999570894628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2006_c0_g1_802_TPlot.pdf
TRINITY_DN20081_c0_g1:365	si_s76	TRINITY_DN20081_c0_g1	353	374	365	-23.60	-16.20	0.686440677966102	14.5	7-15,368-360;16-21,358-353	1-6,374-369[UP5];x-x,359-359[BULt]	((((((.(((((((((......&......)))))))))-))))))	GAGAAAUGGAGAGAGACGUGCG&AUUUUUUUUCUUUCC-UUUCUU	0	0.893416782728877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN20081_c0_g1_365_TPlot.pdf
TRINITY_DN20096_c1_g1:169	si_a89	TRINITY_DN20096_c1_g1	158	178	169	-26.40	-17.20	0.651515151515151	14	7-18,172-161	1-6,178-173[UP5];19-21,160-158[UP3]	...((((((((((((......&......))))))))))))...	ACGGUUACCUUUUCUAUGUUU&UUAUUAAGAAAAGGUAACGAA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN20096_c1_g1_169_TPlot.pdf
TRINITY_DN20096_c2_g1:181	si_s74	TRINITY_DN20096_c2_g1	170	191	181	-25.00	-16.26	0.6504	14.5	1-5,191-187;12-21,179-170	6-11,186-180[AILt]	((((((((((.......(((((&)))))-......))))))))))	GAAGGGAAAGUCAUUAUAAUAG&CUAUU-UUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN20096_c2_g1_181_TPlot.pdf
TRINITY_DN2009_c0_g1:433	si_a79	TRINITY_DN2009_c0_g1	422	442	433	-22.20	-15.50	0.698198198198198	8	2-16,441-427	1-1,442-442[UP5];17-21,426-422[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCGGCUAAUGAUGGAAAACAG&UUGUUUUUCAUUAUUAAGAAA	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN2009_c0_g1_433_TPlot.pdf
TRINITY_DN2009_c0_g1:437	si_a75	TRINITY_DN2009_c0_g1	426	446	437	-21.30	-17.80	0.835680751173709	5.5	1-3,446-444;5-20,442-427	4-4,443-443[SIL];21-21,426-426[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	CUAAUGAUGGAAAACAGAUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2009_c0_g1_437_TPlot.pdf
TRINITY_DN2009_c0_g1:439	si_a73	TRINITY_DN2009_c0_g1	428	448	439	-21.90	-17.80	0.812785388127854	5	2-5,447-444;7-21,442-428	1-1,448-448[UP5];6-6,443-443[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AAUGAUGGAAAACAGAUUGAG&UUCAAAUUGUUUUUCAUUAUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2009_c0_g1_439_TPlot.pdf
TRINITY_DN2009_c0_g1:84	si_a417	TRINITY_DN2009_c0_g1	73	94	84	-21.40	-14.40	0.672897196261682	8	2-8,93-87;11-21,83-73	1-1,94-94[UP5];9-10,86-84[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	UCCUAUAUUUAAUAUAAGUAUC&UAUAUUUA-AAUAAAUAUAGGA	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN2009_c0_g1_84_TPlot.pdf
TRINITY_DN2009_c0_g1:935	si_s174	TRINITY_DN2009_c0_g1	924	944	935	-39.00	-27.70	0.71025641025641	4.5	1-14,944-931;16-20,929-925	15-15,930-930[SIL];21-21,924-924[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AUUACUGGGGUAUUUUUACCU&GGGUAAAGAUGCCCGAGUAAC	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN2009_c0_g1_935_TPlot.pdf
TRINITY_DN2009_c0_g1:936	si_s173	TRINITY_DN2009_c0_g1	925	945	936	-39.70	-28.20	0.710327455919395	4.5	1-15,945-931;17-21,929-925	16-16,930-930[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	UUACUGGGGUAUUUUUACCUU&GGGGUAAAGAUGCCCGAGUAA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN2009_c0_g1_936_TPlot.pdf
TRINITY_DN200_c0_g1:4826	si_s427	TRINITY_DN200_c0_g1	4816	4835	4826	-23.00	-15.12	0.657391304347826	6	1-11,4835-4825;16-20,4821-4817	12-15,4824-4822[AILq];21-21,4816-4816[UP3]	.(((((...-(((((((((((&)))))))))))....))))).	GAUGUAUGU-UUGUUAUAUAG&CUAUAUAACAAUAAUUACAUA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN200_c0_g1_4826_TPlot.pdf
TRINITY_DN20101_c3_g1:23	si_a12	TRINITY_DN20101_c3_g1	11	32	23	-26.80	-17.80	0.664179104477612	9.5	2-10,31-23;11-15,21-17	1-1,32-32[UP5];x-x,22-22[BULt];16-21,16-11[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	CCUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN20101_c3_g1_23_TPlot.pdf
TRINITY_DN20102_c0_g1:448	si_s74	TRINITY_DN20102_c0_g1	432	457	448	-25.00	-18.10	0.724	8.5	2-13,456-445;14-21,439-432	1-1,457-457[UP5];x-x,444-440[BULt]	((((((((.....((((((((((((.&.))))))))))))-----))))))))	GAAAGGAACUGCAGGAGAAAAAAUGU&CUAUUUUUUUUCU-----UUCCUUUC	3	0.999999999710999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN20102_c0_g1_448_TPlot.pdf
TRINITY_DN20104_c0_g1:37	si_s808	TRINITY_DN20104_c0_g1	26	46	37	-28.60	-19.50	0.681818181818182	10	5-13,42-34;15-20,32-27	1-4,46-43[UP5];14-14,33-33[SIL];21-21,26-26[UP3]	.((((((.(((((((((....&....))))))))).)))))).	AUAAGAAUAGGUGACGAUUUG&AUCUUCGUUACCUUUUCUUAA	4	0.999999874958037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN20104_c0_g1_37_TPlot.pdf
TRINITY_DN2010_c0_g1:2496	si_s214	TRINITY_DN2010_c0_g1	2484	2504	2496	-37.10	-25.70	0.692722371967655	8	1-8,2504-2497;10-12,2496-2494;15-20,2490-2485	9-9,x-x[BULq];13-14,2493-2491[AILt];21-21,2484-2484[UP3]	.((((((...(((-((((((((&)))))))).)))-..)))))).	GACGCGGGAGUCG-ACACAGCU&AGUUGUGUUCGA-AACCGCGUG	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s214_TRINITY_DN2010_c0_g1_2496_TPlot.pdf
TRINITY_DN2010_c0_g1:2623	si_a745	TRINITY_DN2010_c0_g1	2613	2632	2623	-42.00	-29.90	0.711904761904762	9.5	1-4,2632-2629;6-10,2627-2623;13-19,2621-2615	5-5,2628-2628[SIL];11-12,2622-2622[AILq];20-21,2614-2613[UP3]	..(((((((.-(((((.((((&)))).)))))..)))))))..	GCGGGAGGUG-AUGGCGGGGG&CCCUGGCCAUGAACCUCCUUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN2010_c0_g1_2623_TPlot.pdf
TRINITY_DN2010_c0_g1:4687	si_a500	TRINITY_DN2010_c0_g1	4677	4696	4687	-34.40	-24.20	0.703488372093023	6	3-15,4694-4682;17-21,4681-4677	1-2,4696-4695[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	UCCAA-GAAGGCGAAAAGCCU&UCGUUUUUCGUCUUCCUUGGA	2	0.989088653046503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2010_c0_g1_4687_TPlot.pdf
TRINITY_DN20115_c0_g2:1150	si_a469	TRINITY_DN20115_c0_g2	1139	1159	1150	-21.10	-15.60	0.739336492890995	13	7-21,1153-1139	1-6,1159-1154[UP5]	(((((((((((((((......&......)))))))))))))))	GUAACGAUAGUUACAGAAAAA&AUAAUAUGUAAUUAUUGUUAU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN20115_c0_g2_1150_TPlot.pdf
TRINITY_DN2011_c0_g1:2286	si_a819	TRINITY_DN2011_c0_g1	2275	2295	2286	-28.90	-19.20	0.664359861591695	7	1-5,2295-2291;7-17,2289-2279	6-6,2290-2290[SIL];18-21,2278-2275[UP3]	....(((((((((((.(((((&))))).)))))))))))....	UUAGCUUUCCUUUUUCCUUCU&AGAAGAAGAAAGGAAAGAAAA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN2011_c0_g1_2286_TPlot.pdf
TRINITY_DN20127_c0_g1:473	si_s817	TRINITY_DN20127_c0_g1	462	482	473	-24.50	-16.20	0.661224489795918	9.5	2-10,481-473;13-18,470-465	1-1,482-482[UP5];11-12,472-471[SIL];19-21,464-462[UP3]	...((((((..(((((((((.&.)))))))))..))))))...	AUCUCAUUGGAAAGGAAAGGG&ACCUUUUCUUAAUAAUGAAAA	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN20127_c0_g1_473_TPlot.pdf
TRINITY_DN2013_c0_g1:74	si_a410	TRINITY_DN2013_c0_g1	63	83	74	-17.80	-13.60	0.764044943820225	8	1-18,83-66	19-21,65-63[UP3]	...((((((((((((((((((&))))))))))))))))))...	CAAAUUUGGAUGUGGAUAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2013_c0_g1_74_TPlot.pdf
TRINITY_DN2014_c0_g1:703	si_a760	TRINITY_DN2014_c0_g1	692	713	703	-31.10	-24.60	0.790996784565916	8	1-7,713-707;8-19,705-694	x-x,706-706[BULt];20-21,693-692[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	UACAAUCGGGAGCCGCGAAGGA&UCCUUUG-GGUUUUUGAUUGAU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2014_c0_g1_703_TPlot.pdf
TRINITY_DN20166_c0_g1:571	si_a138	TRINITY_DN20166_c0_g1	560	580	571	-26.30	-18.90	0.718631178707224	5	2-8,579-573;10-12,571-569;14-21,567-560	1-1,580-580[UP5];9-9,572-572[SIL];13-13,568-568[SIL]	((((((((.(((.(((((((.&.))))))).))).))))))))	GACAACAGGGAUGAAUUACUC&UAGUAAUUAAUCGUUGUUGUU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN20166_c0_g1_571_TPlot.pdf
TRINITY_DN20179_c0_g1:1198	si_a398	TRINITY_DN20179_c0_g1	1187	1207	1198	-22.40	-15.00	0.669642857142857	9	3-20,1205-1188	1-2,1207-1206[UP5];21-21,1187-1187[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GGAACGAGGUAGUUCUAUGAC&AAUAUAGAAUUGUUUUGUUUA	4	0.999999990330304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN20179_c0_g1_1198_TPlot.pdf
TRINITY_DN20196_c0_g1:2123	si_a824	TRINITY_DN20196_c0_g1	2112	2133	2123	-23.60	-15.50	0.656779661016949	9	3-8,2131-2126;9-17,2124-2116	1-2,2133-2132[UP5];x-x,2125-2125[BULt];18-21,2115-2112[UP3]	....(((((((((.((((((..&..))))))-)))))))))....	CUUCUUUUUCUUUGCCUUUCCU&AAGAAAGG-AAAGAAAAAAAAU	2	0.986177743532797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN20196_c0_g1_2123_TPlot.pdf
TRINITY_DN2019_c0_g1:3332	si_s877	TRINITY_DN2019_c0_g1	3321	3341	3332	-22.80	-15.80	0.692982456140351	3.5	2-13,3340-3329;15-21,3327-3321	1-1,3341-3341[UP5];14-14,3328-3328[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UAUUUGUGUUUAGUUUUAAGC&UCUUAGAACUAAAAAUAAAUA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s877_TRINITY_DN2019_c0_g1_3332_TPlot.pdf
TRINITY_DN201_c0_g1:499	si_a865	TRINITY_DN201_c0_g1	489	508	499	-24.00	-16.10	0.670833333333333	10	1-10,508-499;13-21,497-489	11-12,498-498[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	GAUUAGGUCA-UGGUGGUUGG&CCAAUUAUUAAAGAUUUAGUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN201_c0_g1_499_TPlot.pdf
TRINITY_DN201_c0_g2:415	si_a728	TRINITY_DN201_c0_g2	401	424	415	-40.30	-26.64	0.661042183622829	15	3-12,422-413;14-20,408-402	1-2,424-423[UP5];13-13,412-409[AILt];21-21,401-401[UP3]	.(((((((....((((((((((..&..))))))))))---.))))))).	UGGGGUGGUGCUGGUGCCUGGGGA&UACUCGGGCAUC---UUUACCCCU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN201_c0_g2_415_TPlot.pdf
TRINITY_DN201_c0_g2:416	si_a727	TRINITY_DN201_c0_g2	402	425	416	-39.70	-26.24	0.66095717884131	13	4-13,422-413;15-21,408-402	1-3,425-423[UP5];14-14,412-409[AILt]	(((((((....((((((((((...&...))))))))))---.)))))))	GGGGUGGUGCUGGUGCCUGGGGAG&UUACUCGGGCAUC---UUUACCCC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN201_c0_g2_416_TPlot.pdf
TRINITY_DN20208_c0_g1:198	si_s888	TRINITY_DN20208_c0_g1	187	208	198	-26.80	-17.70	0.66044776119403	10	4-7,205-202;8-14,200-194;16-21,192-187	1-3,208-206[UP5];x-x,201-201[BULt];15-15,193-193[SIL]	((((((.(((((((.((((...&...))))-))))))).))))))	GAGAGGCAGCCUGUAUUAUGGG&AAAAUAA-AUAGGCUUUCUCUU	4	0.999980747715898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN20208_c0_g1_198_TPlot.pdf
TRINITY_DN20209_c0_g1:735	si_a374	TRINITY_DN20209_c0_g1	724	746	735	-25.60	-16.78	0.65546875	12	1-6,746-741;9-10,736-735;12-20,733-725	7-8,740-737[AILt];11-11,734-734[SIL];21-21,724-724[UP3]	.(((((((((.((....((((((&))))))--..)).))))))))).	CAUUCGAAAUGGUACUGUUGAUC&GAUCAA--AAAUGAUUUCGAAUU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN20209_c0_g1_735_TPlot.pdf
TRINITY_DN2021_c0_g1:1161	si_s42	TRINITY_DN2021_c0_g1	1150	1170	1161	-24.90	-16.20	0.650602409638554	8	1-2,1170-1169;5-19,1166-1152	3-4,1168-1167[SIL];20-21,1151-1150[UP3]	..(((((((((((((((..((&))..)))))))))))))))..	GGGGAAUUCAAUUGUUACUGA&UCUUUAAUAAUUGGAUUUCAA	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN2021_c0_g1_1161_TPlot.pdf
TRINITY_DN2021_c0_g1:1163	si_s40	TRINITY_DN2021_c0_g1	1152	1172	1163	-24.30	-15.80	0.650205761316872	9	3-4,1170-1169;7-21,1166-1152	1-2,1172-1171[UP5];5-6,1168-1167[SIL]	(((((((((((((((..((..&..))..)))))))))))))))	GGAAUUCAAUUGUUACUGAAU&AAUCUUUAAUAAUUGGAUUUC	2	0.997754019103068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN2021_c0_g1_1163_TPlot.pdf
TRINITY_DN2022_c0_g1:385	si_a807	TRINITY_DN2022_c0_g1	373	394	385	-34.80	-23.50	0.675287356321839	6	2-12,393-383;13-20,381-374	1-1,394-394[UP5];x-x,382-382[BULt];21-21,373-373[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	CUUUUUUCUGUUGCUUCGGAUA&AAUCCGAAGCGA-AGAAGAAGA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a807_TRINITY_DN2022_c0_g1_385_TPlot.pdf
TRINITY_DN20235_c0_g1:982	si_s135	TRINITY_DN20235_c0_g1	970	991	982	-30.50	-21.90	0.718032786885246	8	3-14,989-978;16-21,975-970	1-2,991-990[UP5];15-15,977-976[AILt]	((((((..((((((((((((..&..))))))))))))-.))))))	UGGGUUGCUUGGUUGGUUCGUU&GUUGAAUCAAUCAA-AAACCCA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s135_TRINITY_DN20235_c0_g1_982_TPlot.pdf
TRINITY_DN20235_c0_g1:983	si_s134	TRINITY_DN20235_c0_g1	971	992	983	-30.50	-20.40	0.668852459016393	11	5-15,988-978;17-21,975-971	1-4,992-989[UP5];16-16,977-976[AILt]	(((((..(((((((((((....&....)))))))))))-.)))))	GGGUUGCUUGGUUGGUUCGUUG&AGUUGAAUCAAUCAA-AAACCC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s134_TRINITY_DN20235_c0_g1_983_TPlot.pdf
TRINITY_DN20236_c0_g1:65	si_a896	TRINITY_DN20236_c0_g1	54	75	65	-21.60	-14.90	0.689814814814815	4.5	1-9,75-67;10-14,65-61;16-21,59-54	x-x,66-66[BULt];15-15,60-60[SIL]	((((((.(((((.(((((((((&)))))))))-))))).))))))	UUAUGUCGCUUAUUUAUUACUG&UAGUAAUAA-UAAGUAAUAUAA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN20236_c0_g1_65_TPlot.pdf
TRINITY_DN2024_c0_g1:1351	si_a68	TRINITY_DN2024_c0_g1	1338	1360	1351	-25.40	-17.30	0.681102362204724	10	2-10,1359-1351;11-20,1348-1339	1-1,1360-1360[UP5];x-x,1350-1349[BULt];21-21,1338-1338[UP3]	.((((((((((..(((((((((.&.)))))))))--)))))))))).	AGAGAAACGGUUUUUGGAAGAGU&CUUCUUUCAA--AUUGUUUUUCA	4	0.999999997079543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2024_c0_g1_1351_TPlot.pdf
TRINITY_DN2024_c0_g1:873	si_s814	TRINITY_DN2024_c0_g1	862	882	873	-26.60	-20.30	0.763157894736842	7	3-19,880-864	1-2,882-881[UP5];20-21,863-862[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AGAUUAUUAAGAGAGGGUAUA&GUUACCUUUUCUUAAUAAUGA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN2024_c0_g1_873_TPlot.pdf
TRINITY_DN2025_c0_g1:398	si_s67	TRINITY_DN2025_c0_g1	386	407	398	-25.60	-18.10	0.70703125	5.5	1-2,407-406;4-12,404-396;13-20,394-387	3-3,405-405[SIL];x-x,395-395[BULt];21-21,386-386[UP3]	.((((((((.(((((((((.((&)).)))))))))-)))))))).	UAGAAAAAGCAAUAGAAGUGGC&GCAACUUCUAUU-UUUUUUCUU	4	0.999983678376299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2025_c0_g1_398_TPlot.pdf
TRINITY_DN20261_c0_g1:47	si_s480	TRINITY_DN20261_c0_g1	36	55	47	-25.00	-17.60	0.704	8	1-9,55-47;11-17,46-40	10-10,x-x[BULq];18-21,39-36[UP3]	....(((((((-(((((((((&))))))))).)))))))....	CUCGAGGUAAA-GUAGGAUCC&GGAUCCUAUAUUUAUUUAAAU	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN20261_c0_g1_47_TPlot.pdf
TRINITY_DN20262_c1_g1:42	si_a844	TRINITY_DN20262_c1_g1	31	51	42	-29.20	-19.50	0.667808219178082	9	3-11,49-41;13-18,39-34	1-2,51-50[UP5];12-12,40-40[SIL];19-21,33-31[UP3]	...((((((.(((((((((..&..))))))))).))))))...	CGAUCAAGUAAGUAACUUCGU&UAGAAGUUGCUAACUUGAAAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN20262_c1_g1_42_TPlot.pdf
TRINITY_DN20262_c1_g1:44	si_a842	TRINITY_DN20262_c1_g1	33	53	44	-29.30	-19.50	0.665529010238908	10	5-13,49-41;15-20,39-34	1-4,53-50[UP5];14-14,40-40[SIL];21-21,33-33[UP3]	.((((((.(((((((((....&....))))))))).)))))).	AUCAAGUAAGUAACUUCGUAC&AAUAGAAGUUGCUAACUUGAA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a842_TRINITY_DN20262_c1_g1_44_TPlot.pdf
TRINITY_DN20262_c1_g1:45	si_a841	TRINITY_DN20262_c1_g1	34	54	45	-29.20	-19.30	0.660958904109589	11	6-14,49-41;16-21,39-34	1-5,54-50[UP5];15-15,40-40[SIL]	((((((.(((((((((.....&.....))))))))).))))))	UCAAGUAAGUAACUUCGUACG&AAAUAGAAGUUGCUAACUUGA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN20262_c1_g1_45_TPlot.pdf
TRINITY_DN20267_c2_g1:24	si_s80	TRINITY_DN20267_c2_g1	12	33	24	-28.20	-20.60	0.730496453900709	8	1-10,33-24;11-12,22-21;14-21,19-12	x-x,23-23[BULt];13-13,20-20[SIL]	((((((((.((.((((((((((&))))))))))-)).))))))))	GAGGGGGAUGGCGAGAGAGAAG&UUUUUCUUUC-CUUUCUUCUUC	4	0.999999999999701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN20267_c2_g1_24_TPlot.pdf
TRINITY_DN20270_c0_g1:187	si_a487	TRINITY_DN20270_c0_g1	176	197	187	-24.80	-16.50	0.665322580645161	8.5	2-8,196-190;9-17,188-180	1-1,197-197[UP5];x-x,189-189[BULt];18-21,179-176[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	AUUUACGGCAUAUGUCUAUGUU&UAUAUAGA-AUAUGUCGUUUUU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN20270_c0_g1_187_TPlot.pdf
TRINITY_DN20273_c0_g1:257	si_a791	TRINITY_DN20273_c0_g1	246	266	257	-26.50	-19.30	0.728301886792453	9	3-19,264-248	1-2,266-265[UP5];20-21,247-246[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCAUUGGAAGAUGGAGAGAAA&UAUUUUUCUAUUUUCCAAUCC	0	0.0824526469433435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN20273_c0_g1_257_TPlot.pdf
TRINITY_DN20273_c0_g1:259	si_a789	TRINITY_DN20273_c0_g1	248	268	259	-24.80	-19.90	0.80241935483871	6.5	2-3,267-266;5-21,264-248	1-1,268-268[UP5];4-4,265-265[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	AUUGGAAGAUGGAGAGAAAGU&UCUAUUUUUCUAUUUUCCAAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN20273_c0_g1_259_TPlot.pdf
TRINITY_DN20273_c0_g1:65	si_s68	TRINITY_DN20273_c0_g1	54	76	65	-23.10	-16.30	0.705627705627706	7.5	1-5,76-72;6-8,70-68;9-20,66-55	x-x,71-71[BULt];x-x,67-67[BULt];21-21,54-54[UP3]	.((((((((((((.(((.(((((&)))))-)))-)))))))))))).	CAAGAGAAAGAAUAAGGCAGUUG&CAACU-UCU-AUUUUUUUUCUUU	4	0.999999999837681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN20273_c0_g1_65_TPlot.pdf
TRINITY_DN202_c1_g1:3717	si_s288	TRINITY_DN202_c1_g1	3699	3726	3717	-35.10	-23.30	0.663817663817664	16	1-11,3726-3716;12-15,3708-3705;17-21,3703-3699	x-x,3715-3709[BULt];16-16,3704-3704[SIL]	(((((.((((.......(((((((((((&)))))))))))-------)))).)))))	AAUUCGAAUCAUUACGCGACUAGGUGUA&UACGCCUAGUC-------GAUUGGAAUU	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN202_c1_g1_3717_TPlot.pdf
TRINITY_DN202_c1_g1:435	si_s80	TRINITY_DN202_c1_g1	423	444	435	-28.20	-19.10	0.677304964539007	9.5	3-10,442-435;12-21,432-423	1-2,444-443[UP5];11-11,434-433[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	GAAGAAGAGGCUGAAAGAGAUA&UUUUUCUUUC-CUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN202_c1_g1_435_TPlot.pdf
TRINITY_DN202_c2_g1:3483	si_s846	TRINITY_DN202_c2_g1	3466	3492	3483	-37.30	-24.80	0.664879356568365	11.5	2-6,3491-3487;8-13,3485-3480;14-20,3473-3467	1-1,3492-3492[UP5];7-7,3486-3486[SIL];x-x,3479-3474[BULt];21-21,3466-3466[UP3]	.(((((((......((((((.(((((.&.))))).))))))------))))))).	AAGGGGUCCCACAGGGCUCGGUUCUUG&AAAGAAGCGAGUC------GACUCCUA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN202_c2_g1_3483_TPlot.pdf
TRINITY_DN202_c2_g1:3806	si_a235	TRINITY_DN202_c2_g1	3794	3815	3806	-33.60	-21.90	0.651785714285714	7	1-5,3815-3811;8-14,3808-3802;15-20,3800-3795	6-7,3810-3809[SIL];x-x,3801-3801[BULt];21-21,3794-3794[UP3]	.((((((.(((((((..(((((&)))))..)))))))-)))))).	UGGGGUCUGGAUUGACGAUAGA&UCUAUAAUCAAUUC-GAUCCCC	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a235_TRINITY_DN202_c2_g1_3806_TPlot.pdf
TRINITY_DN202_c2_g1:3808	si_a233	TRINITY_DN202_c2_g1	3796	3817	3808	-28.90	-18.90	0.653979238754325	9	3-7,3815-3811;10-16,3808-3802;17-21,3800-3796	1-2,3817-3816[UP5];8-9,3810-3809[SIL];x-x,3801-3801[BULt]	(((((.(((((((..(((((..&..)))))..)))))))-)))))	GGGUCUGGAUUGACGAUAGACU&UUUCUAUAAUCAAUUC-GAUCC	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN202_c2_g1_3808_TPlot.pdf
TRINITY_DN2030_c0_g1:1199	si_s490	TRINITY_DN2030_c0_g1	1188	1209	1199	-17.80	-12.10	0.679775280898876	8	1-5,1209-1205;8-20,1201-1189	6-7,1204-1202[AILt];21-21,1188-1188[UP3]	.(((((((((((((...(((((&)))))-..))))))))))))).	AUUUGUUUAUAUUUUCUGUAAA&UUUAU-UUAAAUAUAAACAAAA	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN2030_c0_g1_1199_TPlot.pdf
TRINITY_DN2030_c0_g1:755	si_a419	TRINITY_DN2030_c0_g1	744	763	755	-23.00	-15.18	0.66	14.5	1-5,763-759;12-21,753-744	6-11,758-754[AILq]	((((((((((.....-(((((&)))))......))))))))))	GAUCCUAUGUGGAAG-GAGUA&UAUUUAAAUAAAUAUAGGAUC	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN2030_c0_g1_755_TPlot.pdf
TRINITY_DN2030_c0_g1:937	si_a841	TRINITY_DN2030_c0_g1	927	946	937	-29.20	-19.00	0.650684931506849	7	3-13,944-934;17-20,931-928	1-2,946-945[UP5];14-16,933-932[AILq];21-21,927-927[UP3]	.((((..-(((((((((((..&..)))))))))))...)))).	GCAAGAU-GCAACUUCUAUAA&AAAUAGAAGUUGCUAACUUGA	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN2030_c0_g1_937_TPlot.pdf
TRINITY_DN2030_c0_g1:938	si_a840	TRINITY_DN2030_c0_g1	928	947	938	-28.20	-18.80	0.666666666666667	8	4-14,944-934;18-21,931-928	1-3,947-945[UP5];15-17,933-932[AILq]	((((..-(((((((((((...&...)))))))))))...))))	CAAGAU-GCAACUUCUAUAAU&AAAAUAGAAGUUGCUAACUUG	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a840_TRINITY_DN2030_c0_g1_938_TPlot.pdf
TRINITY_DN2031_c0_g1:1169	si_a319	TRINITY_DN2031_c0_g1	1158	1179	1169	-22.40	-14.90	0.665178571428572	7.5	1-8,1179-1172;9-10,1170-1169;12-21,1167-1158	x-x,1171-1171[BULt];11-11,1168-1168[SIL]	((((((((((.((.((((((((&))))))))-)).))))))))))	GGUGAAGGAAGCAUUGGAUAGA&UUUAUCCA-UGAUUUUUUUAUU	4	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2031_c0_g1_1169_TPlot.pdf
TRINITY_DN2031_c0_g1:2335	si_a624	TRINITY_DN2031_c0_g1	2326	2344	2335	-32.30	-21.20	0.656346749226006	9	1-10,2344-2335;13-21,2334-2326	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	AAGUUGGCG--GUAUGCCUGG&CUAGGCGUAUUAUGUCGAUUU	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN2031_c0_g1_2335_TPlot.pdf
TRINITY_DN2032_c0_g1:1205	si_a353	TRINITY_DN2032_c0_g1	1194	1213	1205	-24.00	-16.50	0.6875	10.5	2-5,1212-1209;8-20,1207-1195	1-1,1213-1213[UP5];6-7,1208-1208[AILq];21-21,1194-1194[UP3]	.(((((((((((((.-((((.&.))))..))))))))))))).	GGAUCAAGAUGGAGA-GAUGG&AUAUUAAUUCUAUUUUGAUCG	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN2032_c0_g1_1205_TPlot.pdf
TRINITY_DN2032_c0_g1:1325	si_a595	TRINITY_DN2032_c0_g1	1314	1334	1325	-30.30	-24.80	0.818481848184819	7.5	4-19,1331-1316	1-3,1334-1332[UP5];20-21,1315-1314[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUUUGCGAGAAUUCUGUCACG&AAGGACAGAAUUUUCGCAAUU	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN2032_c0_g1_1325_TPlot.pdf
TRINITY_DN2032_c0_g1:1480	si_a106	TRINITY_DN2032_c0_g1	1469	1489	1480	-31.20	-20.34	0.651923076923077	11.5	1-8,1489-1482;14-20,1476-1470	9-13,1481-1477[SIL];21-21,1469-1469[UP3]	.(((((((.....((((((((&)))))))).....))))))).	GGAGCUCGAGCUCUGUCUUCG&CGAAGAUAAAAUACGAGCUUG	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a106_TRINITY_DN2032_c0_g1_1480_TPlot.pdf
TRINITY_DN2032_c0_g1:1481	si_a105	TRINITY_DN2032_c0_g1	1470	1490	1481	-30.30	-20.24	0.667986798679868	10.5	2-9,1489-1482;15-21,1476-1470	1-1,1490-1490[UP5];10-14,1481-1477[SIL]	(((((((.....((((((((.&.)))))))).....)))))))	GAGCUCGAGCUCUGUCUUCGA&ACGAAGAUAAAAUACGAGCUU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a105_TRINITY_DN2032_c0_g1_1481_TPlot.pdf
TRINITY_DN2032_c0_g1:2158	si_a604	TRINITY_DN2032_c0_g1	2146	2168	2158	-31.60	-23.30	0.737341772151899	7	2-8,2167-2161;9-15,2159-2153;17-21,2150-2146	1-1,2168-2168[UP5];x-x,2160-2160[BULt];16-16,2152-2151[AILt]	(((((..(((((((.(((((((.&.)))))))-)))))))-.)))))	GUCGAGCUGGAAUUCGCGAGAGC&AUUUUCGC-AAUUCCA-AUCGAC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN2032_c0_g1_2158_TPlot.pdf
TRINITY_DN2032_c0_g1:951	si_s316	TRINITY_DN2032_c0_g1	936	960	951	-31.50	-22.10	0.701587301587302	17	1-12,960-949;13-18,944-939	x-x,948-945[BULt];19-21,938-936[UP3]	...((((((....((((((((((((&))))))))))))----))))))...	UCGGUGGCAAUCAGGAGGGGCGGGA&UUCUGUCCUUCU----UGUUACAAA	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN2032_c0_g1_951_TPlot.pdf
TRINITY_DN2033_c0_g1:1266	si_a58	TRINITY_DN2033_c0_g1	1255	1280	1266	-34.60	-22.60	0.653179190751445	14.5	1-5,1280-1276;6-9,1274-1271;10-19,1266-1257	x-x,1275-1275[BULt];x-x,1270-1267[BULt];20-21,1256-1255[UP3]	..((((((((((....((((.(((((&)))))-))))----))))))))))..	UGUGGAGGGAGCAGACGAGUACGGCU&AGUCG-ACUC----GCUUCUUUCAAA	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN2033_c0_g1_1266_TPlot.pdf
TRINITY_DN2033_c0_g1:1385	si_a628	TRINITY_DN2033_c0_g1	1374	1394	1385	-27.10	-18.00	0.664206642066421	12	1-5,1394-1390;7-14,1388-1381	6-6,1389-1389[SIL];15-21,1380-1374[UP3]	.......((((((((.(((((&))))).)))))))).......	CUCCUUUUCGGCAUGCUGCGC&GCGUAUUAUGUCGAUUUUUUU	3	0.999999141658786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN2033_c0_g1_1385_TPlot.pdf
TRINITY_DN2033_c0_g1:1443	si_a587	TRINITY_DN2033_c0_g1	1431	1451	1443	-30.80	-21.90	0.711038961038961	6	1-6,1451-1446;8-10,1445-1443;11-21,1441-1431	7-7,x-x[BULq];x-x,1442-1442[BULt]	(((((((((((.(((-((((((&)))))).)))-)))))))))))	AGAUUUUGUCCAUUC-UGUUGC&GUAACAAGAA-GGACAGAAUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a587_TRINITY_DN2033_c0_g1_1443_TPlot.pdf
TRINITY_DN2033_c0_g1:1444	si_a586	TRINITY_DN2033_c0_g1	1432	1452	1444	-31.50	-22.10	0.701587301587302	6	1-7,1452-1446;9-11,1445-1443;12-21,1441-1432	8-8,x-x[BULq];x-x,1442-1442[BULt]	((((((((((.(((-(((((((&))))))).)))-))))))))))	GAUUUUGUCCAUUC-UGUUGCA&UGUAACAAGAA-GGACAGAAUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a586_TRINITY_DN2033_c0_g1_1444_TPlot.pdf
TRINITY_DN2033_c0_g1:1445	si_a585	TRINITY_DN2033_c0_g1	1433	1453	1445	-31.60	-21.20	0.670886075949367	6.5	2-8,1452-1446;10-12,1445-1443;13-21,1441-1433	1-1,1453-1453[UP5];9-9,x-x[BULq];x-x,1442-1442[BULt]	(((((((((.(((-(((((((.&.))))))).)))-)))))))))	AUUUUGUCCAUUC-UGUUGCAG&UUGUAACAAGAA-GGACAGAAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN2033_c0_g1_1445_TPlot.pdf
TRINITY_DN2033_c0_g1:4063	si_a498	TRINITY_DN2033_c0_g1	4052	4071	4063	-33.50	-21.88	0.653134328358209	13.5	1-4,4071-4068;11-21,4062-4052	5-10,4067-4063[AILq]	(((((((((((.....-((((&))))......)))))))))))	CGAGGAGGGCGUAUCG-GACA&UGUCGUUUUUCGUCUUCCUUG	2	0.999999999772513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2033_c0_g1_4063_TPlot.pdf
TRINITY_DN2033_c0_g1:4157	si_a503	TRINITY_DN2033_c0_g1	4145	4166	4157	-32.10	-21.20	0.660436137071651	12	5-13,4162-4154;14-18,4152-4148	1-4,4166-4163[UP5];x-x,4153-4153[BULt];19-21,4147-4145[UP3]	...(((((.(((((((((....&....)))))))))-)))))...	UUGUCCAAUGGAGGACGACGAU&UUUUUCGUCUUCC-UUGGAAUG	2	0.99999276288231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN2033_c0_g1_4157_TPlot.pdf
TRINITY_DN2033_c0_g1:4158	si_a502	TRINITY_DN2033_c0_g1	4146	4167	4158	-32.10	-21.20	0.660436137071651	13	6-14,4162-4154;15-19,4152-4148	1-5,4167-4163[UP5];x-x,4153-4153[BULt];20-21,4147-4146[UP3]	..(((((.(((((((((.....&.....)))))))))-)))))..	UGUCCAAUGGAGGACGACGAUC&GUUUUUCGUCUUCC-UUGGAAU	2	0.999999986680528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2033_c0_g1_4158_TPlot.pdf
TRINITY_DN20347_c1_g1:137	si_a752	TRINITY_DN20347_c1_g1	126	150	137	-34.80	-24.80	0.71264367816092	15	3-9,148-142;10-20,137-127	1-2,150-149[UP5];x-x,141-138[BULt];21-21,126-126[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	CGGACCCAAGGGUUCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN20347_c1_g1_137_TPlot.pdf
TRINITY_DN2034_c0_g1:835	si_s73	TRINITY_DN2034_c0_g1	825	845	835	-24.00	-16.40	0.683333333333333	6.5	1-4,845-842;5-15,840-830;17-21,829-825	x-x,841-841[BULt];16-16,x-x[BULq]	(((((-(((((((((((.((((&))))-))))))))))).)))))	GGAGG-AGGAAAAGAAGUUAGA&UCUA-UUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2034_c0_g1_835_TPlot.pdf
TRINITY_DN2035_c1_g2:1578	si_a784	TRINITY_DN2035_c1_g2	1567	1588	1578	-24.70	-16.60	0.672064777327935	9	3-5,1586-1584;6-20,1582-1568	1-2,1588-1587[UP5];x-x,1583-1583[BULt];21-21,1567-1567[UP3]	.(((((((((((((((.(((..&..)))-))))))))))))))).	UAAGUAGAGGAAUGGACAGAAA&ACUCU-UCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2035_c1_g2_1578_TPlot.pdf
TRINITY_DN20366_c0_g1:1523	si_a353	TRINITY_DN20366_c0_g1	1513	1532	1523	-24.00	-15.90	0.6625	7.5	4-14,1529-1519;17-21,1517-1513	1-3,1532-1530[UP5];15-16,1518-1518[AILq]	(((((.-(((((((((((...&...)))))))))))..)))))	CGAUCC-GAUAGAAUUAAAUG&AUAUUAAUUCUAUUUUGAUCG	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN20366_c0_g1_1523_TPlot.pdf
TRINITY_DN20366_c0_g1:399	si_a66	TRINITY_DN20366_c0_g1	388	414	399	-26.70	-18.10	0.677902621722847	15.5	2-8,413-407;9-20,400-389	1-1,414-414[UP5];x-x,406-401[BULt];21-21,388-388[UP3]	.((((((((((((......(((((((.&.)))))))------)))))))))))).	CAAGGCGAUUUGACUGCGGAAGAAGCC&CGCUUCUU------UCAAAUUGUUUUU	2	0.999998374711793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN20366_c0_g1_399_TPlot.pdf
TRINITY_DN20366_c0_g1:4268	si_s441	TRINITY_DN20366_c0_g1	4257	4278	4268	-23.20	-15.30	0.65948275862069	10	1-8,4278-4271;10-14,4268-4264;16-21,4262-4257	9-9,4270-4269[AILt];15-15,4263-4263[SIL]	((((((.(((((..((((((((&))))))))-.))))).))))))	GUUGUUUUGUGUUUGUGUGUGG&UUACAUAU-UAUAUAUAACAAC	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN20366_c0_g1_4268_TPlot.pdf
TRINITY_DN20366_c0_g1:4961	si_a762	TRINITY_DN20366_c0_g1	4950	4971	4961	-29.70	-19.50	0.656565656565657	7	1-6,4971-4966;7-14,4964-4957;17-20,4954-4951	x-x,4965-4965[BULt];15-16,4956-4955[SIL];21-21,4950-4950[UP3]	.((((..((((((((.((((((&))))))-))))))))..)))).	AAAUCUUUCAAAAACACCAGGG&CUUUGG-GUUUUUGAUUGAUUC	2	0.999996395299518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN20366_c0_g1_4961_TPlot.pdf
TRINITY_DN20366_c0_g1:931	si_a785	TRINITY_DN20366_c0_g1	919	940	931	-25.90	-16.90	0.652509652509653	9	1-13,940-928;14-17,926-923	x-x,927-927[BULt];18-21,922-919[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	AGCUAUAGCAGAAAUGGGGGAG&CUCUUCUAUUUUU-CUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN20366_c0_g1_931_TPlot.pdf
TRINITY_DN20366_c0_g1:932	si_a784	TRINITY_DN20366_c0_g1	920	941	932	-24.70	-17.10	0.692307692307692	8.5	2-14,940-928;15-18,926-923	1-1,941-941[UP5];x-x,927-927[BULt];19-21,922-920[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	GCUAUAGCAGAAAUGGGGGAGG&ACUCUUCUAUUUUU-CUAUUUU	2	0.999999482818051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN20366_c0_g1_932_TPlot.pdf
TRINITY_DN2036_c0_g1:1259	si_s803	TRINITY_DN2036_c0_g1	1247	1268	1259	-26.00	-17.40	0.669230769230769	7	2-5,1267-1264;7-11,1262-1258;12-20,1256-1248	1-1,1268-1268[UP5];6-6,1263-1263[SIL];x-x,1257-1257[BULt];21-21,1247-1247[UP3]	.(((((((((.(((((.((((.&.)))).)))))-))))))))).	UAGAGGUGACAGAAGAAAAAAG&AUUUUAUCUUC-GUUACCUUUU	2	0.999999871692969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2036_c0_g1_1259_TPlot.pdf
TRINITY_DN2036_c0_g1:1260	si_s802	TRINITY_DN2036_c0_g1	1248	1269	1260	-26.40	-17.40	0.659090909090909	8	3-6,1267-1264;8-12,1262-1258;13-21,1256-1248	1-2,1269-1268[UP5];7-7,1263-1263[SIL];x-x,1257-1257[BULt]	(((((((((.(((((.((((..&..)))).)))))-)))))))))	AGAGGUGACAGAAGAAAAAAGG&UAUUUUAUCUUC-GUUACCUUU	2	0.9999998041018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN2036_c0_g1_1260_TPlot.pdf
TRINITY_DN2036_c0_g1:1262	si_s87	TRINITY_DN2036_c0_g1	1250	1271	1262	-32.90	-21.90	0.665653495440729	4	1-7,1271-1265;9-15,1263-1257;16-21,1255-1250	8-8,1264-1264[SIL];x-x,1256-1256[BULt]	((((((.(((((((.(((((((&))))))).)))))))-))))))	AGGUGACAGAAGAAAAAAGGAA&UUCCUUUCUUCUUCU-UCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2036_c0_g1_1262_TPlot.pdf
TRINITY_DN2037_c0_g1:2097	si_a449	TRINITY_DN2037_c0_g1	2086	2105	2097	-25.70	-18.70	0.727626459143969	7	1-7,2105-2099;9-18,2098-2089	8-8,x-x[BULq];19-21,2088-2086[UP3]	...((((((((((-(((((((&))))))).))))))))))...	GAAAUGGCAGCAA-UAUCUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN2037_c0_g1_2097_TPlot.pdf
TRINITY_DN2037_c0_g1:2098	si_a448	TRINITY_DN2037_c0_g1	2087	2106	2098	-25.50	-18.70	0.733333333333333	6.5	2-8,2105-2099;10-19,2098-2089	1-1,2106-2106[UP5];9-9,x-x[BULq];20-21,2088-2087[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	AAAUGGCAGCAA-UAUCUCAA&AUGAGAUAAUUGUUGUUAUAU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN2037_c0_g1_2098_TPlot.pdf
TRINITY_DN2037_c0_g1:2568	si_s706	TRINITY_DN2037_c0_g1	2557	2577	2568	-29.40	-20.20	0.687074829931973	8	1-5,2577-2573;8-14,2570-2564;16-20,2562-2558	6-7,2572-2571[SIL];15-15,2563-2563[SIL];21-21,2557-2557[UP3]	.(((((.(((((((..(((((&)))))..))))))).))))).	CUUCCCCGUUCACUUCUGGAU&AUUUAUUAGUGAACAGGGAAA	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN2037_c0_g1_2568_TPlot.pdf
TRINITY_DN2038_c0_g1:1503	si_a17	TRINITY_DN2038_c0_g1	1492	1521	1503	-24.30	-16.40	0.674897119341564	22.5	2-9,1520-1513;10-20,1503-1493	1-1,1521-1521[UP5];x-x,1512-1504[BULt];21-21,1492-1492[UP3]	.(((((((((((.........((((((((.&.))))))))---------))))))))))).	UGCUGAAGAUAAUCACUACUUAUGGGCUUC&AAAGCCUAU---------UUAUUUUUAGUU	2	0.999754944886661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN2038_c0_g1_1503_TPlot.pdf
TRINITY_DN2038_c0_g1:1696	si_a411	TRINITY_DN2038_c0_g1	1685	1705	1696	-17.90	-12.70	0.709497206703911	6.5	1-6,1705-1700;8-19,1698-1687	7-7,1699-1699[SIL];20-21,1686-1685[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	CAUUAUUUGGAUAUCAACGAA&UUUGUUUAUAUUUAAAUAAAU	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2038_c0_g1_1696_TPlot.pdf
TRINITY_DN2038_c0_g1:1697	si_a410	TRINITY_DN2038_c0_g1	1686	1706	1697	-17.80	-13.40	0.752808988764045	5	1-7,1706-1700;9-20,1698-1687	8-8,1699-1699[SIL];21-21,1686-1686[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AUUAUUUGGAUAUCAACGAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2038_c0_g1_1697_TPlot.pdf
TRINITY_DN2038_c0_g1:1698	si_a409	TRINITY_DN2038_c0_g1	1687	1707	1698	-19.50	-16.30	0.835897435897436	4	1-8,1707-1700;10-21,1698-1687	9-9,1699-1699[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UUAUUUGGAUAUCAACGAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2038_c0_g1_1698_TPlot.pdf
TRINITY_DN2038_c0_g1:1699	si_a408	TRINITY_DN2038_c0_g1	1688	1708	1699	-20.10	-15.70	0.781094527363184	5	2-9,1707-1700;11-21,1698-1688	1-1,1708-1708[UP5];10-10,1699-1699[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UAUUUGGAUAUCAACGAAACU&UGUUUUGUUUAUAUUUAAAUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2038_c0_g1_1699_TPlot.pdf
TRINITY_DN2038_c0_g1:1700	si_a407	TRINITY_DN2038_c0_g1	1689	1709	1700	-19.80	-14.20	0.717171717171717	7	3-10,1707-1700;12-21,1698-1689	1-2,1709-1708[UP5];11-11,1699-1699[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AUUUGGAUAUCAACGAAACUU&UUGUUUUGUUUAUAUUUAAAU	3	0.9999995509213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2038_c0_g1_1700_TPlot.pdf
TRINITY_DN2038_c0_g1:1701	si_a406	TRINITY_DN2038_c0_g1	1690	1710	1701	-19.80	-13.20	0.666666666666667	9	4-11,1707-1700;13-21,1698-1690	1-3,1710-1708[UP5];12-12,1699-1699[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UUUGGAUAUCAACGAAACUUU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2038_c0_g1_1701_TPlot.pdf
TRINITY_DN2038_c0_g1:1931	si_a411	TRINITY_DN2038_c0_g1	1920	1940	1931	-17.90	-12.70	0.709497206703911	6.5	1-6,1940-1935;8-19,1933-1922	7-7,1934-1934[SIL];20-21,1921-1920[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	CAUUAUUUGGAUAUCAACGAA&UUUGUUUAUAUUUAAAUAAAU	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2038_c0_g1_1931_TPlot.pdf
TRINITY_DN2038_c0_g1:1932	si_a410	TRINITY_DN2038_c0_g1	1921	1941	1932	-17.80	-13.40	0.752808988764045	5	1-7,1941-1935;9-20,1933-1922	8-8,1934-1934[SIL];21-21,1921-1921[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AUUAUUUGGAUAUCAACGAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2038_c0_g1_1932_TPlot.pdf
TRINITY_DN2038_c0_g1:1933	si_a409	TRINITY_DN2038_c0_g1	1922	1942	1933	-19.50	-16.30	0.835897435897436	4	1-8,1942-1935;10-21,1933-1922	9-9,1934-1934[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UUAUUUGGAUAUCAACGAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2038_c0_g1_1933_TPlot.pdf
TRINITY_DN2038_c0_g1:1934	si_a408	TRINITY_DN2038_c0_g1	1923	1943	1934	-20.10	-15.70	0.781094527363184	5	2-9,1942-1935;11-21,1933-1923	1-1,1943-1943[UP5];10-10,1934-1934[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UAUUUGGAUAUCAACGAAACU&UGUUUUGUUUAUAUUUAAAUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2038_c0_g1_1934_TPlot.pdf
TRINITY_DN2038_c0_g1:1935	si_a407	TRINITY_DN2038_c0_g1	1924	1944	1935	-19.80	-14.20	0.717171717171717	7	3-10,1942-1935;12-21,1933-1924	1-2,1944-1943[UP5];11-11,1934-1934[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AUUUGGAUAUCAACGAAACUU&UUGUUUUGUUUAUAUUUAAAU	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2038_c0_g1_1935_TPlot.pdf
TRINITY_DN2038_c0_g1:1936	si_a406	TRINITY_DN2038_c0_g1	1925	1945	1936	-19.80	-13.20	0.666666666666667	9	4-11,1942-1935;13-21,1933-1925	1-3,1945-1943[UP5];12-12,1934-1934[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UUUGGAUAUCAACGAAACUUU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999999925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2038_c0_g1_1936_TPlot.pdf
TRINITY_DN20395_c0_g1:615	si_a860	TRINITY_DN20395_c0_g1	604	624	615	-24.30	-16.40	0.674897119341564	9.5	4-9,621-616;11-19,614-606	1-3,624-622[UP5];10-10,615-615[SIL];20-21,605-604[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	CUUCUUUGAUAUUUGGAUGUU&GAAAUCCAAUUAUUAAAGAUU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN20395_c0_g1_615_TPlot.pdf
TRINITY_DN20395_c0_g1:617	si_a858	TRINITY_DN20395_c0_g1	606	626	617	-24.90	-16.30	0.654618473895582	11.5	6-11,621-616;13-21,614-606	1-5,626-622[UP5];12-12,615-615[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	UCUUUGAUAUUUGGAUGUUGG&UUGAAAUCCAAUUAUUAAAGA	1	0.0245788793994353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a858_TRINITY_DN20395_c0_g1_617_TPlot.pdf
TRINITY_DN2039_c2_g1:81	si_a714	TRINITY_DN2039_c2_g1	69	89	81	-31.90	-21.70	0.68025078369906	4	1-9,89-81;11-12,80-79;14-18,77-73;19-21,71-69	10-10,x-x[BULq];13-13,78-78[SIL];x-x,72-72[BULt]	(((.(((((.((-(((((((((&))))))))).)).)))))-)))	CCGUAGUAAGGA-UAUUUUGGA&UCCAAAAUAAUCGUUACU-CGG	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a714_TRINITY_DN2039_c2_g1_81_TPlot.pdf
TRINITY_DN203_c1_g1:1227	si_a637	TRINITY_DN203_c1_g1	1215	1236	1227	-25.80	-17.70	0.686046511627907	10.5	2-10,1235-1227;12-20,1224-1216	1-1,1236-1236[UP5];11-11,1226-1225[AILt];21-21,1215-1215[UP3]	.(((((((((..(((((((((.&.)))))))))-.))))))))).	CUAUUGCUCGUCGAAGAUCGGA&GUCGAUUUUU-UUGAGUAAUAU	3	0.999997166155618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN203_c1_g1_1227_TPlot.pdf
TRINITY_DN203_c1_g1:2039	si_a20	TRINITY_DN203_c1_g1	2028	2050	2039	-26.70	-17.36	0.650187265917603	15	1-5,2050-2046;9-19,2040-2030	6-8,2045-2041[AILt];20-21,2029-2028[UP3]	..(((((((((((.....(((((&)))))--...)))))))))))..	GUGGACUGAAGAUUAUGCUGGGC&GCCUA--UUUAUUUUUAGUUCUA	4	0.999999999428223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN203_c1_g1_2039_TPlot.pdf
TRINITY_DN203_c3_g1:580	si_s75	TRINITY_DN203_c3_g1	569	589	580	-24.00	-17.40	0.725	9.5	3-8,587-582;10-20,580-570	1-2,589-588[UP5];9-9,581-581[SIL];21-21,569-569[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGGAAGGAAAGAUAGAAGGCC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN203_c3_g1_580_TPlot.pdf
TRINITY_DN203_c4_g1:852	si_a511	TRINITY_DN203_c4_g1	837	860	852	-38.40	-25.10	0.653645833333333	13.5	1-6,860-855;8-10,854-852;11-15,847-843;17-21,841-837	7-7,x-x[BULq];x-x,851-848[BULt];16-16,842-842[SIL]	(((((.(((((....(((-((((((&)))))).)))----))))).)))))	CCGCCGUGCGUUACAUCC-AGGAGG&CUUCCUUGGA----AUGUAAGGCGG	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN203_c4_g1_852_TPlot.pdf
TRINITY_DN203_c5_g1:959	si_s485	TRINITY_DN203_c5_g1	948	968	959	-18.10	-11.80	0.651933701657459	6	1-14,968-955;17-18,952-951	15-16,954-953[SIL];19-21,950-948[UP3]	...((..((((((((((((((&))))))))))))))..))...	CAGAUUGUUAAAUAAAUGUAG&CUAUAUUUAUUUAAAUAUAAA	2	0.999903646668128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN203_c5_g1_959_TPlot.pdf
TRINITY_DN20404_c0_g1:804	si_a755	TRINITY_DN20404_c0_g1	793	813	804	-34.90	-24.50	0.702005730659026	9.5	4-5,810-809;7-20,807-794	1-3,813-811[UP5];6-6,808-808[SIL];21-21,793-793[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	ACGAAGGCCCAAAGGCGGAGC&GAACCUCCUUUGGGUUUUUGA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN20404_c0_g1_804_TPlot.pdf
TRINITY_DN2041_c0_g1:1396	si_s161	TRINITY_DN2041_c0_g1	1385	1407	1396	-41.50	-29.80	0.718072289156627	7.5	1-7,1407-1401;8-14,1398-1392;16-21,1390-1385	x-x,1400-1399[BULt];15-15,1391-1391[SIL]	((((((.(((((((..(((((((&)))))))--))))))).))))))	CUUUAUACCUGGCCUAGUGGACC&GGUUCAU--GGCCAGGGGUAAAG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN2041_c0_g1_1396_TPlot.pdf
TRINITY_DN2041_c0_g1:1397	si_s160	TRINITY_DN2041_c0_g1	1386	1408	1397	-40.60	-26.90	0.66256157635468	8.5	2-8,1407-1401;9-15,1398-1392;17-21,1390-1386	1-1,1408-1408[UP5];x-x,1400-1399[BULt];16-16,1391-1391[SIL]	(((((.(((((((..(((((((.&.)))))))--))))))).)))))	UUUAUACCUGGCCUAGUGGACCA&AGGUUCAU--GGCCAGGGGUAAA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN2041_c0_g1_1397_TPlot.pdf
TRINITY_DN2042_c0_g2:1667	si_a76	TRINITY_DN2042_c0_g2	1656	1676	1667	-21.20	-14.40	0.679245283018868	14	6-19,1671-1658	1-5,1676-1672[UP5];20-21,1657-1656[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCUGAUGAUGAGGAACUCGGU&AAAUUGUUUUUCAUUAUUAAG	4	0.999999990527863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN2042_c0_g2_1667_TPlot.pdf
TRINITY_DN2042_c0_g2:1669	si_a74	TRINITY_DN2042_c0_g2	1658	1679	1669	-22.20	-15.52	0.699099099099099	11.5	1-4,1679-1676;8-21,1671-1658	5-7,1675-1672[AILt]	((((((((((((((....((((&))))-...))))))))))))))	UGAUGAUGAGGAACUCGGUUGG&UCAA-AUUGUUUUUCAUUAUUA	1	0.11895579305444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN2042_c0_g2_1669_TPlot.pdf
TRINITY_DN2042_c0_g2:1674	si_a665	TRINITY_DN2042_c0_g2	1662	1684	1674	-29.60	-20.70	0.699324324324324	11	3-8,1682-1677;9-12,1675-1672;13-21,1670-1662	1-2,1684-1683[UP5];x-x,1676-1676[BULt];x-x,1671-1671[BULt]	(((((((((.((((.((((((..&..))))))-))))-)))))))))	GAUGAGGAACUCGGUUGGGCAGA&AAUGCCUA-UUGA-UUCCUUAUU	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN2042_c0_g2_1674_TPlot.pdf
TRINITY_DN2043_c0_g1:1586	si_s39	TRINITY_DN2043_c0_g1	1575	1595	1586	-22.30	-15.60	0.699551569506726	10	5-13,1591-1583;15-20,1581-1576	1-4,1595-1592[UP5];14-14,1582-1582[SIL];21-21,1575-1575[UP3]	.((((((.(((((((((....&....))))))))).)))))).	CAAUCCAUUUAUUAGAGGAAA&AAAUCUUUAAUAAUUGGAUUU	2	0.975189943484374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN2043_c0_g1_1586_TPlot.pdf
TRINITY_DN20442_c0_g1:2036	si_s676	TRINITY_DN20442_c0_g1	2025	2045	2036	-27.40	-19.80	0.722627737226277	6.5	2-18,2044-2028	1-1,2045-2045[UP5];19-21,2027-2025[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CAGUUCAUGUUUCUAUAGUUC&UGAUUAUAGAAACAUGAGUUU	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s676_TRINITY_DN20442_c0_g1_2036_TPlot.pdf
TRINITY_DN20444_c0_g1:720	si_a636	TRINITY_DN20444_c0_g1	709	730	720	-26.30	-18.90	0.718631178707224	7	2-7,729-724;8-17,722-713	1-1,730-730[UP5];x-x,723-723[BULt];18-21,712-709[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	GCCGACUCAAAAAACAUCGACG&UGUCGAU-UUUUUUGAGUAAUA	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN20444_c0_g1_720_TPlot.pdf
TRINITY_DN20445_c0_g1:345	si_a113	TRINITY_DN20445_c0_g1	335	354	345	-26.20	-18.40	0.702290076335878	10	4-15,351-340;18-20,338-336	1-3,354-352[UP5];16-17,339-339[AILq];21-21,335-335[UP3]	.(((.-((((((((((((...&...))))))))))))..))).	GGUGU-ACAGGCUCGUAUGAA&AAAAUACGAGCUUGUUUUAUA	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN20445_c0_g1_345_TPlot.pdf
TRINITY_DN2044_c0_g1:1085	si_a333	TRINITY_DN2044_c0_g1	1074	1095	1085	-30.60	-21.70	0.709150326797386	10	1-7,1095-1089;8-18,1087-1077	x-x,1088-1088[BULt];19-21,1076-1074[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	GAAUUGGGACGAGGUGGUGAAG&UUUUAUU-CCUUGUCCCGAAAA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2044_c0_g1_1085_TPlot.pdf
TRINITY_DN2044_c0_g1:1086	si_a332	TRINITY_DN2044_c0_g1	1075	1096	1086	-30.60	-21.80	0.712418300653595	10.5	2-8,1095-1089;9-19,1087-1077	1-1,1096-1096[UP5];x-x,1088-1088[BULt];20-21,1076-1075[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	AAUUGGGACGAGGUGGUGAAGC&UUUUUAUU-CCUUGUCCCGAAA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN2044_c0_g1_1086_TPlot.pdf
TRINITY_DN2044_c0_g1:1087	si_a331	TRINITY_DN2044_c0_g1	1076	1097	1087	-30.60	-21.80	0.712418300653595	11	3-9,1095-1089;10-20,1087-1077	1-2,1097-1096[UP5];x-x,1088-1088[BULt];21-21,1076-1076[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	AUUGGGACGAGGUGGUGAAGCU&UUUUUUAUU-CCUUGUCCCGAA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2044_c0_g1_1087_TPlot.pdf
TRINITY_DN2044_c0_g1:1090	si_a329	TRINITY_DN2044_c0_g1	1078	1099	1090	-29.60	-20.30	0.685810810810811	14	5-11,1095-1089;12-21,1087-1078	1-4,1099-1096[UP5];x-x,1088-1088[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	UGGGACGAGGUGGUGAAGCUUG&AUUUUUUUAUU-CCUUGUCCCG	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2044_c0_g1_1090_TPlot.pdf
TRINITY_DN2044_c0_g1:1706	si_s628	TRINITY_DN2044_c0_g1	1689	1715	1706	-35.40	-23.56	0.665536723163842	12	1-13,1715-1703;15-21,1695-1689	14-14,1702-1696[AILt]	(((((((.......(((((((((((((&)))))))))))))------.)))))))	GGACGCCAUCAGUGAUGAGGAGAUUGC&GCGAUCUUUUCGU------AGGCGUUU	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN2044_c0_g1_1706_TPlot.pdf
TRINITY_DN2044_c0_g1:2116	si_a141	TRINITY_DN2044_c0_g1	2104	2125	2116	-23.80	-16.60	0.697478991596639	6	1-14,2125-2112;15-20,2110-2105	x-x,2111-2111[BULt];21-21,2104-2104[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	GAAGAUAUGCAAUGAUUGAUUG&UAAUUAAUCGUUGU-UGUUUUA	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2044_c0_g1_2116_TPlot.pdf
TRINITY_DN2044_c0_g1:226	si_a262	TRINITY_DN2044_c0_g1	215	238	226	-40.30	-26.30	0.652605459057072	11	3-7,236-232;8-18,228-218;20-21,216-215	1-2,238-237[UP5];x-x,231-229[BULt];19-19,217-217[SIL]	((.(((((((((((...(((((..&..)))))---))))))))))).))	CGAAGGCGUUUGCCAAUCUUGACA&UAUCGAG---GGCAAACGCCUACG	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a262_TRINITY_DN2044_c0_g1_226_TPlot.pdf
TRINITY_DN2044_c0_g1:330	si_s79	TRINITY_DN2044_c0_g1	319	339	330	-26.20	-23.40	0.893129770992366	7	3-21,337-319	1-2,339-338[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AAGAAGGGAGGGAAGAAGGUG&UUUUUUCUUUCCUUUCUUCUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2044_c0_g1_330_TPlot.pdf
TRINITY_DN2044_c0_g1:334	si_s71	TRINITY_DN2044_c0_g1	323	343	334	-25.70	-19.60	0.762645914396887	10.5	4-21,340-323	1-3,343-341[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGGAGGGAAGAAGGUGGCGA&CUUCUAUUUUUUUUCUUUCCU	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2044_c0_g1_334_TPlot.pdf
TRINITY_DN2044_c0_g1:378	si_s67	TRINITY_DN2044_c0_g1	367	389	378	-25.60	-17.10	0.66796875	10.5	1-9,389-381;11-15,377-373;18-21,370-367	10-10,380-378[AILt];16-17,372-371[SIL]	((((..(((((...(((((((((&)))))))))--.)))))..))))	GAGAUCGAGAACUCGGAAGUUGC&GCAACUUCU--AUUUUUUUUCUU	2	0.999999725859389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2044_c0_g1_378_TPlot.pdf
TRINITY_DN20451_c0_g2:281	si_s507	TRINITY_DN20451_c0_g2	266	290	281	-22.70	-15.40	0.6784140969163	13.5	2-11,289-280;12-19,275-268	1-1,290-290[UP5];x-x,279-276[BULt];20-21,267-266[UP3]	..((((((((....((((((((((.&.))))))))))----))))))))..	UGAAGAAUGUAUCUGGAGUUGUUUC&AAAACAAUUCU----AUAUUCUUAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN20451_c0_g2_281_TPlot.pdf
TRINITY_DN20451_c0_g2:567	si_s509	TRINITY_DN20451_c0_g2	556	577	567	-22.80	-15.20	0.666666666666667	10.5	3-5,575-573;6-18,571-559	1-2,577-576[UP5];x-x,572-572[BULt];19-21,558-556[UP3]	...(((((((((((((.(((..&..)))-)))))))))))))...	GUAUGAGAAUAUGGGACUUGGA&AACAA-UUCUAUAUUCUUAAUU	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN20451_c0_g2_567_TPlot.pdf
TRINITY_DN20451_c0_g2:568	si_s508	TRINITY_DN20451_c0_g2	557	578	568	-22.80	-15.20	0.666666666666667	11.5	4-6,575-573;7-19,571-559	1-3,578-576[UP5];x-x,572-572[BULt];20-21,558-557[UP3]	..(((((((((((((.(((...&...)))-)))))))))))))..	UAUGAGAAUAUGGGACUUGGAA&AAACAA-UUCUAUAUUCUUAAU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN20451_c0_g2_568_TPlot.pdf
TRINITY_DN20451_c0_g2:584	si_a328	TRINITY_DN20451_c0_g2	568	593	584	-30.10	-19.60	0.651162790697674	14.5	1-11,593-583;12-14,577-575;17-21,572-568	x-x,582-578[BULt];15-16,574-573[SIL]	(((((..(((.....(((((((((((&)))))))))))-----)))..)))))	GGGACUUGGAAAAAGGUGAAAAAAUU&GAUUUUUUUAU-----UCCUUGUCCC	2	0.999989872352742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN20451_c0_g2_584_TPlot.pdf
TRINITY_DN20457_c0_g2:597	si_a413	TRINITY_DN20457_c0_g2	586	606	597	-18.40	-12.20	0.66304347826087	8	2-7,605-600;9-19,598-588	1-1,606-606[UP5];8-8,599-599[SIL];20-21,587-586[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	UAGUUUGUUUAAAAAUAGGCU&UGUUUAUAUUUAAAUAAAUAU	1	0.130814966018425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN20457_c0_g2_597_TPlot.pdf
TRINITY_DN20457_c2_g3:192	si_s684	TRINITY_DN20457_c2_g3	181	201	192	-28.30	-18.80	0.664310954063604	4.5	1-10,201-192;12-15,190-187;17-21,185-181	11-11,191-191[SIL];16-16,186-186[SIL]	(((((.((((.((((((((((&)))))))))).)))).)))))	GAUUACUUAAUUUCAUGUUUC&GAAACAUGAGUUUAAUUAGUC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN20457_c2_g3_192_TPlot.pdf
TRINITY_DN2045_c0_g1:1798	si_s3	TRINITY_DN2045_c0_g1	1788	1807	1798	-21.20	-13.90	0.655660377358491	10	3-11,1805-1797;13-20,1796-1789	1-2,1807-1806[UP5];12-12,x-x[BULq];21-21,1788-1788[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	UGUGGUGGU-GGUGAUAUACC&UUUAUAUUACUUAUUAUUACU	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2045_c0_g1_1798_TPlot.pdf
TRINITY_DN2045_c0_g1:1969	si_s7	TRINITY_DN2045_c0_g1	1958	1979	1969	-21.70	-15.80	0.728110599078341	9	2-6,1978-1974;7-20,1972-1959	1-1,1979-1979[UP5];x-x,1973-1973[BULt];21-21,1958-1958[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	UUGUGGUGGUGGUGAUGUAAUU&UAUUAC-UUAUUAUUACUAUAU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN2045_c0_g1_1969_TPlot.pdf
TRINITY_DN2045_c0_g1:1970	si_s6	TRINITY_DN2045_c0_g1	1959	1980	1970	-21.70	-15.70	0.723502304147465	10	3-7,1978-1974;8-21,1972-1959	1-2,1980-1979[UP5];x-x,1973-1973[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	UGUGGUGGUGGUGAUGUAAUUA&AUAUUAC-UUAUUAUUACUAUA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN2045_c0_g1_1970_TPlot.pdf
TRINITY_DN2045_c0_g1:2183	si_s691	TRINITY_DN2045_c0_g1	2172	2190	2183	-26.20	-18.00	0.687022900763359	9	1-7,2190-2184;10-19,2183-2174	8-9,x-x[BULq];20-21,2173-2172[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	AGGAAUUGACUA--UGAGCUC&GAGUUUAAUUAGUCGAUUUAU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN2045_c0_g1_2183_TPlot.pdf
TRINITY_DN2045_c0_g1:2184	si_s689	TRINITY_DN2045_c0_g1	2174	2192	2184	-26.50	-19.40	0.732075471698113	7	1-9,2192-2184;12-21,2183-2174	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GAAUUGACUA--UGAGCUCAU&AUGAGUUUAAUUAGUCGAUUU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN2045_c0_g1_2184_TPlot.pdf
TRINITY_DN2045_c0_g1:2347	si_a75	TRINITY_DN2045_c0_g1	2334	2356	2347	-21.30	-14.00	0.657276995305164	10	1-11,2356-2346;12-17,2343-2338	x-x,2345-2344[BULt];18-21,2337-2334[UP3]	....((((((..(((((((((((&)))))))))))--))))))....	GUUCUAAUGACGAAGACGAUUUG&CAAAUUGUUUU--UCAUUAUUAA	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2045_c0_g1_2347_TPlot.pdf
TRINITY_DN2045_c0_g1:2348	si_a74	TRINITY_DN2045_c0_g1	2335	2357	2348	-22.20	-15.60	0.702702702702703	9	1-12,2357-2346;13-18,2343-2338	x-x,2345-2344[BULt];19-21,2337-2335[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	UUCUAAUGACGAAGACGAUUUGA&UCAAAUUGUUUU--UCAUUAUUA	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN2045_c0_g1_2348_TPlot.pdf
TRINITY_DN2045_c0_g1:2350	si_a72	TRINITY_DN2045_c0_g1	2337	2359	2350	-21.90	-16.40	0.748858447488584	6	2-14,2358-2346;15-20,2343-2338	1-1,2359-2359[UP5];x-x,2345-2344[BULt];21-21,2337-2337[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	CUAAUGACGAAGACGAUUUGAAC&UUUCAAAUUGUUUU--UCAUUAU	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN2045_c0_g1_2350_TPlot.pdf
TRINITY_DN2045_c0_g1:2463	si_a764	TRINITY_DN2045_c0_g1	2453	2472	2463	-28.90	-19.40	0.671280276816609	7.5	3-13,2470-2460;15-20,2459-2454	1-2,2472-2471[UP5];14-14,x-x[BULq];21-21,2453-2453[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CUGGAUC-AUCAAGAACUCUU&UUGGGUUUUUGAUUGAUUCAA	2	0.999796678004897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2045_c0_g1_2463_TPlot.pdf
TRINITY_DN2045_c0_g1:2464	si_a763	TRINITY_DN2045_c0_g1	2454	2473	2464	-28.80	-19.10	0.663194444444445	8.5	4-14,2470-2460;16-21,2459-2454	1-3,2473-2471[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	UGGAUC-AUCAAGAACUCUUA&UUUGGGUUUUUGAUUGAUUCA	2	0.999997118796743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2045_c0_g1_2464_TPlot.pdf
TRINITY_DN2045_c0_g1:828	si_a119	TRINITY_DN2045_c0_g1	817	838	828	-30.30	-21.90	0.722772277227723	10	1-6,838-833;7-17,831-821	x-x,832-832[BULt];18-21,820-817[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	GCACGCUAUGAAGCAGGGCUUG&CGAGCU-UGUUUUAUAGCAAUA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN2045_c0_g1_828_TPlot.pdf
TRINITY_DN2045_c0_g1:829	si_a118	TRINITY_DN2045_c0_g1	818	839	829	-30.70	-21.90	0.713355048859935	9.5	2-7,838-833;8-18,831-821	1-1,839-839[UP5];x-x,832-832[BULt];19-21,820-818[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	CACGCUAUGAAGCAGGGCUUGA&ACGAGCU-UGUUUUAUAGCAAU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN2045_c0_g1_829_TPlot.pdf
TRINITY_DN2047_c0_g1:1494	si_a785	TRINITY_DN2047_c0_g1	1483	1503	1494	-25.90	-22.10	0.853281853281853	4.5	1-9,1503-1495;11-20,1493-1484	10-10,1494-1494[SIL];21-21,1483-1483[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AAGAAUAGAAAUGUAGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2047_c0_g1_1494_TPlot.pdf
TRINITY_DN2047_c0_g1:1497	si_a782	TRINITY_DN2047_c0_g1	1486	1506	1497	-26.40	-20.40	0.772727272727273	7	4-12,1503-1495;14-21,1493-1486	1-3,1506-1504[UP5];13-13,1494-1494[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AAUAGAAAUGUAGAAGAGGAC&CAACUCUUCUAUUUUUCUAUU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2047_c0_g1_1497_TPlot.pdf
TRINITY_DN2047_c0_g1:1799	si_s227	TRINITY_DN2047_c0_g1	1787	1808	1799	-34.80	-23.90	0.686781609195402	6.5	1-2,1808-1807;4-12,1805-1797;14-20,1794-1788	3-3,1806-1806[SIL];13-13,1796-1795[AILt];21-21,1787-1787[UP3]	.(((((((..(((((((((.((&)).)))))))))-.))))))).	CUGGUUCCGCUAUUCACGCAGU&ACCGCGUGAAUA-AGGAAUCAA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s227_TRINITY_DN2047_c0_g1_1799_TPlot.pdf
TRINITY_DN2047_c0_g1:2394	si_a646	TRINITY_DN2047_c0_g1	2382	2403	2394	-29.40	-19.40	0.659863945578231	9.5	2-16,2402-2388;17-19,2386-2384	1-1,2403-2403[UP5];x-x,2387-2387[BULt];20-21,2383-2382[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	AGUCCAUGAUGUGUUGCUUAGU&UUUGAGUAAUAUAUCG-GGAAA	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN2047_c0_g1_2394_TPlot.pdf
TRINITY_DN2047_c0_g1:2395	si_a645	TRINITY_DN2047_c0_g1	2383	2404	2395	-29.40	-19.40	0.659863945578231	10	3-17,2402-2388;18-20,2386-2384	1-2,2404-2403[UP5];x-x,2387-2387[BULt];21-21,2383-2383[UP3]	.(((.(((((((((((((((..&..)))))))))))))))-))).	GUCCAUGAUGUGUUGCUUAGUA&UUUUGAGUAAUAUAUCG-GGAA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN2047_c0_g1_2395_TPlot.pdf
TRINITY_DN2047_c0_g1:2396	si_a644	TRINITY_DN2047_c0_g1	2384	2405	2396	-29.30	-19.20	0.655290102389078	11	4-18,2402-2388;19-21,2386-2384	1-3,2405-2403[UP5];x-x,2387-2387[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	UCCAUGAUGUGUUGCUUAGUAA&UUUUUGAGUAAUAUAUCG-GGA	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN2047_c0_g1_2396_TPlot.pdf
TRINITY_DN2047_c0_g1:2399	si_a641	TRINITY_DN2047_c0_g1	2388	2409	2399	-23.60	-17.60	0.745762711864407	7	1-6,2409-2404;7-20,2402-2389	x-x,2403-2403[BULt];21-21,2388-2388[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	UGAUGUGUUGCUUAGUAAAAAU&AUUUUU-UUGAGUAAUAUAUCG	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN2047_c0_g1_2399_TPlot.pdf
TRINITY_DN2047_c0_g1:3323	si_s534	TRINITY_DN2047_c0_g1	3312	3333	3323	-28.80	-19.10	0.663194444444445	8	1-5,3333-3329;6-11,3327-3322;13-18,3320-3315	x-x,3328-3328[BULt];12-12,3321-3321[SIL];19-21,3314-3312[UP3]	...((((((.((((((.(((((&)))))-)))))).))))))...	CUGGAUCGGUUCAAAAUGUGAU&AUCAU-UUUUGAUCCGAUCAAA	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN2047_c0_g1_3323_TPlot.pdf
TRINITY_DN2047_c0_g1:3413	si_s98	TRINITY_DN2047_c0_g1	3402	3423	3413	-34.70	-23.00	0.662824207492795	8	1-9,3423-3415;10-15,3413-3408;17-19,3406-3404	x-x,3414-3414[BULt];16-16,3407-3407[SIL];20-21,3403-3402[UP3]	..(((.((((((.(((((((((&)))))))))-)))))).)))..	AGUUCUGUCCGAGGGCGAGGAA&UUCUUCGCU-UCGGAUUGGAAA	3	0.999756459400394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN2047_c0_g1_3413_TPlot.pdf
TRINITY_DN2047_c0_g1:5362	si_s626	TRINITY_DN2047_c0_g1	5350	5371	5362	-36.10	-23.70	0.656509695290859	10	3-11,5369-5361;13-21,5358-5350	1-2,5371-5370[UP5];12-12,5360-5359[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	ACGUCUAUGUCAGAGAUUGCGA&AAGCGAUCUUU-UCGUAGGCGU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN2047_c0_g1_5362_TPlot.pdf
TRINITY_DN20493_c0_g1:16	si_s75	TRINITY_DN20493_c0_g1	4	25	16	-24.00	-19.80	0.825	8	3-15,23-11;16-21,9-4	1-2,25-24[UP5];x-x,10-10[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAGAGAGAGAGAGAGAGAAGU&UAUUUUUUUUCUUUC-CUUUCU	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN20493_c0_g1_16_TPlot.pdf
TRINITY_DN20493_c0_g1:20	si_s67	TRINITY_DN20493_c0_g1	9	28	20	-25.60	-20.70	0.80859375	5.5	1-9,28-20;11-21,19-9	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	GAGAGAGAGAG-AGAAGUUGU&GCAACUUCUAUUUUUUUUCUU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN20493_c0_g1_20_TPlot.pdf
TRINITY_DN20496_c0_g2:124	si_a821	TRINITY_DN20496_c0_g2	113	133	124	-26.20	-17.60	0.67175572519084	5	1-19,133-115	20-21,114-113[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UGUUUUCUUUUUUUUCUUUUU&AAGAAGAAAGGAAAGAAAAAA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN20496_c0_g2_124_TPlot.pdf
TRINITY_DN2049_c0_g1:2466	si_s197	TRINITY_DN2049_c0_g1	2454	2475	2466	-29.20	-19.20	0.657534246575342	8	1-14,2475-2462;16-20,2459-2455	15-15,2461-2460[AILt];21-21,2454-2454[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	CGCUGGAAAUAUUCUAGAGUGA&UUAUUUUGGAAUGU-ACCAGUU	2	0.996258695104733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN2049_c0_g1_2466_TPlot.pdf
TRINITY_DN2049_c0_g1:2467	si_s196	TRINITY_DN2049_c0_g1	2455	2476	2467	-29.30	-20.20	0.689419795221843	7	1-15,2476-2462;17-21,2459-2455	16-16,2461-2460[AILt]	(((((..(((((((((((((((&)))))))))))))))-.)))))	GCUGGAAAUAUUCUAGAGUGAU&AUUAUUUUGGAAUGU-ACCAGU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN2049_c0_g1_2467_TPlot.pdf
TRINITY_DN2049_c0_g1:6021	si_a319	TRINITY_DN2049_c0_g1	6010	6030	6021	-22.40	-14.70	0.65625	7.5	2-9,6029-6022;12-20,6019-6011	1-1,6030-6030[UP5];10-11,6021-6020[SIL];21-21,6010-6010[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	UAUAAAGAAAAAAUGGAUGAU&UUUAUCCAUGAUUUUUUUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2049_c0_g1_6021_TPlot.pdf
TRINITY_DN2049_c0_g1:6022	si_a318	TRINITY_DN2049_c0_g1	6011	6031	6022	-22.50	-14.70	0.653333333333333	8.5	3-10,6029-6022;13-21,6019-6011	1-2,6031-6030[UP5];11-12,6021-6020[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	AUAAAGAAAAAAUGGAUGAUG&AUUUAUCCAUGAUUUUUUUAU	2	0.999999999910554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2049_c0_g1_6022_TPlot.pdf
TRINITY_DN204_c0_g1:1227	si_a890	TRINITY_DN204_c0_g1	1216	1236	1227	-23.80	-15.70	0.659663865546218	4	1-12,1236-1225;14-19,1223-1218	13-13,1224-1224[SIL];20-21,1217-1216[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AUCUUAUUCUUAUUAUAUUGA&UCAAUAUAGUAAUAAUAAGUA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN204_c0_g1_1227_TPlot.pdf
TRINITY_DN204_c0_g1:1706	si_a798	TRINITY_DN204_c0_g1	1695	1715	1706	-34.10	-23.50	0.689149560117302	6.5	1-10,1715-1706;12-14,1704-1702;16-20,1700-1696	11-11,1705-1705[SIL];15-15,1701-1701[SIL];21-21,1695-1695[UP3]	.(((((.(((.((((((((((&)))))))))).))).))))).	ACGUUUGGGAGUGGGAAAUGG&CUAUUUUCCAAUCCGAAGCGA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN204_c0_g1_1706_TPlot.pdf
TRINITY_DN204_c0_g1:1707	si_a797	TRINITY_DN204_c0_g1	1696	1716	1707	-34.10	-23.50	0.689149560117302	6.5	2-11,1715-1706;13-15,1704-1702;17-21,1700-1696	1-1,1716-1716[UP5];12-12,1705-1705[SIL];16-16,1701-1701[SIL]	(((((.(((.((((((((((.&.)))))))))).))).)))))	CGUUUGGGAGUGGGAAAUGGU&UCUAUUUUCCAAUCCGAAGCG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a797_TRINITY_DN204_c0_g1_1707_TPlot.pdf
TRINITY_DN204_c0_g1:807	si_a259	TRINITY_DN204_c0_g1	796	816	807	-39.20	-28.60	0.729591836734694	7	1-9,816-808;12-21,805-796	10-11,807-806[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	AGGCGUUUGCAGUUGGUGCAA&UUGUAUCGAGGGCAAACGCCU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN204_c0_g1_807_TPlot.pdf
TRINITY_DN20505_c0_g1:1502	si_a395	TRINITY_DN20505_c0_g1	1491	1511	1502	-24.70	-17.20	0.696356275303644	4.5	2-15,1510-1497;17-21,1495-1491	1-1,1511-1511[UP5];16-16,1496-1496[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AUAAAUCAAUUUUAUGUUCUG&AAGAAUAUAGAAUUGUUUUGU	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN20505_c0_g1_1502_TPlot.pdf
TRINITY_DN2050_c0_g2:1517	si_s94	TRINITY_DN2050_c0_g2	1501	1526	1517	-35.50	-23.90	0.673239436619718	8.5	1-4,1526-1523;6-13,1521-1514;14-17,1509-1506;18-21,1504-1501	5-5,1522-1522[SIL];x-x,1513-1510[BULt];x-x,1505-1505[BULt]	((((.((((....((((((((.((((&)))).))))))))----))))-))))	CAGUACCGAAUGUAGCGAGGACGAAG&CUUCUUCUUCGCU----UCGG-AUUG	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2050_c0_g2_1517_TPlot.pdf
TRINITY_DN2050_c0_g2:3346	si_s899	TRINITY_DN2050_c0_g2	3335	3360	3346	-28.30	-20.40	0.720848056537102	12	1-4,3360-3357;5-15,3351-3341;17-21,3339-3335	x-x,3356-3352[BULt];16-16,3340-3340[SIL]	(((((.(((((((((((.....((((&))))-----))))))))))).)))))	AAUUGUAAUUGAAGAGAUAAAAGAGC&GCUU-----UCUCUUCAAUUUCAAUU	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2050_c0_g2_3346_TPlot.pdf
TRINITY_DN2050_c0_g2:3390	si_a762	TRINITY_DN2050_c0_g2	3379	3399	3390	-29.70	-19.50	0.656565656565657	6	1-12,3399-3388;14-14,3386-3386;16-20,3384-3380	13-13,3387-3387[SIL];15-15,3385-3385[SIL];21-21,3379-3379[UP3]	.(((((.(.((((((((((((&)))))))))))).).))))).	CGAUUAUUGAAGAACCCGAAG&CUUUGGGUUUUUGAUUGAUUC	2	0.999996527411654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2050_c0_g2_3390_TPlot.pdf
TRINITY_DN2050_c0_g2:3391	si_a761	TRINITY_DN2050_c0_g2	3380	3400	3391	-30.10	-19.90	0.661129568106312	6	2-13,3399-3388;15-15,3386-3386;17-21,3384-3380	1-1,3400-3400[UP5];14-14,3387-3387[SIL];16-16,3385-3385[SIL]	(((((.(.((((((((((((.&.)))))))))))).).)))))	GAUUAUUGAAGAACCCGAAGA&CCUUUGGGUUUUUGAUUGAUU	3	0.999999999120068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN2050_c0_g2_3391_TPlot.pdf
TRINITY_DN2050_c0_g2:4106	si_s808	TRINITY_DN2050_c0_g2	4095	4118	4106	-28.60	-19.34	0.676223776223776	11.5	1-9,4118-4110;11-19,4105-4097	10-10,4109-4106[AILt];20-21,4096-4095[UP3]	..(((((((((....(((((((((&)))))))))---.)))))))))..	ACGGGAGAAGGAAGCAACGAAGAU&AUCUUCGUU---ACCUUUUCUUAA	4	0.999999987865376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2050_c0_g2_4106_TPlot.pdf
TRINITY_DN2050_c0_g2:4108	si_a328	TRINITY_DN2050_c0_g2	4097	4119	4108	-30.10	-20.86	0.693023255813953	13	1-7,4119-4113;11-16,4107-4102;18-21,4100-4097	8-10,4112-4108[AILt];17-17,4101-4101[SIL]	((((.((((((.....(((((((&)))))))--...)))))).))))	GGGAGAAGGAAGCAACGAAGAUC&GAUUUUU--UUAUUCCUUGUCCC	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2050_c0_g2_4108_TPlot.pdf
TRINITY_DN2050_c0_g2:4111	si_s806	TRINITY_DN2050_c0_g2	4097	4120	4111	-28.60	-19.14	0.669230769230769	12.5	3-11,4118-4110;13-21,4105-4097	1-2,4120-4119[UP5];12-12,4109-4106[AILt]	(((((((((....(((((((((..&..)))))))))---.)))))))))	GGGAGAAGGAAGCAACGAAGAUCU&UUAUCUUCGUU---ACCUUUUCUU	3	0.999999999878981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2050_c0_g2_4111_TPlot.pdf
TRINITY_DN2050_c0_g2:5939	si_s192	TRINITY_DN2050_c0_g2	5928	5947	5939	-28.00	-18.60	0.664285714285714	7	3-6,5945-5942;8-11,5941-5938;13-21,5936-5928	1-2,5947-5946[UP5];7-7,x-x[BULq];12-12,5937-5937[SIL]	(((((((((.((((-((((..&..)))).)))).)))))))))	GUACAUUCCUAAAU-AUCGAA&AACGAUUAUUUUGGAAUGUAC	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN2050_c0_g2_5939_TPlot.pdf
TRINITY_DN2050_c0_g2:656	si_a787	TRINITY_DN2050_c0_g2	645	665	656	-26.30	-17.56	0.667680608365019	10.5	1-9,665-657;14-21,652-645	10-13,656-653[SIL]	((((((((....(((((((((&)))))))))....))))))))	UGGAAGAUUUUUGGAUAGAGG&CUUCUAUUUUUCUAUUUUCCA	3	0.999999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2050_c0_g2_656_TPlot.pdf
TRINITY_DN2050_c0_g2:7725	si_a398	TRINITY_DN2050_c0_g2	7714	7734	7725	-22.40	-16.50	0.736607142857143	13	7-20,7728-7715	1-6,7734-7729[UP5];21-21,7714-7714[UP3]	.((((((((((((((......&......)))))))))))))).	GAAGCAGAACAAUUCAAAAUU&AAUAUAGAAUUGUUUUGUUUA	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2050_c0_g2_7725_TPlot.pdf
TRINITY_DN20517_c0_g1:10099	si_a708	TRINITY_DN20517_c0_g1	10088	10108	10099	-28.00	-19.50	0.696428571428571	8.5	1-14,10108-10095	15-21,10094-10088[UP3]	.......((((((((((((((&)))))))))))))).......	UAGAAUAGUUUUGGAAUGUGC&GUACAUUCCAAAAUAAUCGUU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a708_TRINITY_DN20517_c0_g1_10099_TPlot.pdf
TRINITY_DN20517_c0_g1:1251	si_a322	TRINITY_DN20517_c0_g1	1240	1261	1251	-27.00	-18.00	0.666666666666667	8.5	1-5,1261-1257;7-19,1254-1242	6-6,1256-1255[AILt];20-21,1241-1240[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	CAGAGUGGAAAGAUCUCUGGAU&AUCCA-UGAUUUUUUUAUUCCU	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN20517_c0_g1_1251_TPlot.pdf
TRINITY_DN20517_c0_g1:1252	si_a321	TRINITY_DN20517_c0_g1	1241	1262	1252	-26.70	-18.00	0.674157303370786	8.5	2-6,1261-1257;8-20,1254-1242	1-1,1262-1262[UP5];7-7,1256-1255[AILt];21-21,1241-1241[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	AGAGUGGAAAGAUCUCUGGAUC&UAUCCA-UGAUUUUUUUAUUCC	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN20517_c0_g1_1252_TPlot.pdf
TRINITY_DN20517_c0_g1:1253	si_a320	TRINITY_DN20517_c0_g1	1242	1263	1253	-24.40	-18.00	0.737704918032787	9.5	3-7,1261-1257;9-21,1254-1242	1-2,1263-1262[UP5];8-8,1256-1255[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GAGUGGAAAGAUCUCUGGAUCG&UUAUCCA-UGAUUUUUUUAUUC	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN20517_c0_g1_1253_TPlot.pdf
TRINITY_DN20517_c0_g1:2740	si_s88	TRINITY_DN20517_c0_g1	2729	2749	2740	-34.80	-24.10	0.692528735632184	9	5-20,2745-2730	1-4,2749-2746[UP5];21-21,2729-2729[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAGCGAAGAAGAAGGAUGCA&UCCUUUCUUCUUCUUCGCUUC	4	0.99999999906161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN20517_c0_g1_2740_TPlot.pdf
TRINITY_DN20517_c0_g1:4289	si_a193	TRINITY_DN20517_c0_g1	4278	4298	4289	-30.90	-20.10	0.650485436893204	12	1-9,4298-4290;11-14,4288-4285	10-10,4289-4289[SIL];15-21,4284-4278[UP3]	.......((((.(((((((((&))))))))).)))).......	CUCGAGCGUGAUCGGGGGGAG&CUUUCCCUGUUCACUAAUAAA	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN20517_c0_g1_4289_TPlot.pdf
TRINITY_DN20517_c0_g1:4310	si_s633	TRINITY_DN20517_c0_g1	4298	4319	4310	-37.90	-28.00	0.738786279683377	8.5	1-3,4319-4317;5-8,4315-4312;10-15,4310-4305;16-21,4303-4298	4-4,4316-4316[SIL];9-9,4311-4311[SIL];x-x,4304-4304[BULt]	((((((.((((((.((((.(((&))).)))).))))))-))))))	GGGGCACGGCGCCGGCGAUGAG&CUUUUCGUAGGCGUU-UGCCCU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN20517_c0_g1_4310_TPlot.pdf
TRINITY_DN20517_c0_g1:4312	si_s631	TRINITY_DN20517_c0_g1	4300	4321	4312	-36.00	-25.20	0.7	9	2-5,4320-4317;7-10,4315-4312;12-17,4310-4305;18-21,4303-4300	1-1,4321-4321[UP5];6-6,4316-4316[SIL];11-11,4311-4311[SIL];x-x,4304-4304[BULt]	((((.((((((.((((.((((.&.)))).)))).))))))-))))	GGCACGGCGCCGGCGAUGAGAA&AUCUUUUCGUAGGCGUU-UGCC	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN20517_c0_g1_4312_TPlot.pdf
TRINITY_DN20517_c0_g1:67	si_s794	TRINITY_DN20517_c0_g1	53	76	67	-31.20	-20.32	0.651282051282051	8.5	1-14,76-63;17-21,57-53	15-16,62-58[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	UGGAGUGCAGAGAAUGCGAGUUUG&CAAGCUCGUAUUUU---AUCUUCG	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN20517_c0_g1_67_TPlot.pdf
TRINITY_DN20517_c0_g1:72	si_s789	TRINITY_DN20517_c0_g1	61	81	72	-26.20	-18.00	0.687022900763359	13	6-19,76-63	1-5,81-77[UP5];20-21,62-61[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGAGAAUGCGAGUUUGCGCAG&UAAAACAAGCUCGUAUUUUAU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN20517_c0_g1_72_TPlot.pdf
TRINITY_DN2051_c0_g1:1034	si_s372	TRINITY_DN2051_c0_g1	1024	1043	1034	-45.70	-29.80	0.652078774617068	8.5	4-12,1040-1032;14-21,1031-1024	1-3,1043-1041[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GUGGACAC-CGGGUGAUCAAG&ACCGAUCGCUCGCGUGUCCGC	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN2051_c0_g1_1034_TPlot.pdf
TRINITY_DN2051_c0_g1:1260	si_a693	TRINITY_DN2051_c0_g1	1249	1270	1260	-33.00	-21.60	0.654545454545455	5	1-5,1270-1266;6-16,1264-1254;18-21,1252-1249	x-x,1265-1265[BULt];17-17,1253-1253[SIL]	((((.(((((((((((.(((((&)))))-))))))))))).))))	GUGUCUCAGUUGUGUUAUGAAA&UUUCG-AACACAACUGGUACAU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a693_TRINITY_DN2051_c0_g1_1260_TPlot.pdf
TRINITY_DN2051_c0_g1:569	si_s66	TRINITY_DN2051_c0_g1	558	578	569	-26.30	-18.10	0.688212927756654	7.5	2-7,577-572;9-11,570-568;14-21,565-558	1-1,578-578[UP5];8-8,571-571[SIL];12-13,567-566[SIL]	((((((((..(((.((((((.&.)))))).)))..))))))))	GGAAGAGAUCUAGCAGUUGCA&AGCAACUUCUAUUUUUUUUCU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2051_c0_g1_569_TPlot.pdf
TRINITY_DN2051_c0_g1:748	si_s481	TRINITY_DN2051_c0_g1	736	757	748	-23.00	-15.50	0.673913043478261	7	1-12,757-746;14-18,743-739	13-13,745-744[AILt];19-21,738-736[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	ACGUUAAACCAAAUAUGGGAUC&GAUCCUAUAUUU-AUUUAAAUA	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN2051_c0_g1_748_TPlot.pdf
TRINITY_DN2052_c0_g1:1355	si_a478	TRINITY_DN2052_c0_g1	1344	1364	1355	-21.30	-15.30	0.71830985915493	7	1-10,1364-1355;12-19,1353-1346	11-11,1354-1354[SIL];20-21,1345-1344[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AAAUUCUAUAGAACGGUAGUU&AAUUAUUGUUAUAUAGAAUAU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN2052_c0_g1_1355_TPlot.pdf
TRINITY_DN2052_c0_g1:1695	si_s486	TRINITY_DN2052_c0_g1	1684	1705	1695	-18.10	-12.50	0.69060773480663	3.5	1-6,1705-1700;7-20,1698-1685	x-x,1699-1699[BULt];21-21,1684-1684[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	AUUUAUAUUUAAAUAUAAUAUG&UAUAUU-UAUUUAAAUAUAAAC	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN2052_c0_g1_1695_TPlot.pdf
TRINITY_DN20531_c0_g3:229	si_a636	TRINITY_DN20531_c0_g3	218	238	229	-26.30	-18.90	0.718631178707224	6	2-2,237-237;4-20,235-219	1-1,238-238[UP5];3-3,236-236[SIL];21-21,218-218[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	AAUUACUUGAAGAAAUCGUCG&UGUCGAUUUUUUUGAGUAAUA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN20531_c0_g3_229_TPlot.pdf
TRINITY_DN20531_c0_g3:281	si_s528	TRINITY_DN20531_c0_g3	272	290	281	-29.40	-19.68	0.669387755102041	8.5	1-10,290-281;15-21,278-272	11-14,280-279[AILq]	(((((((..--((((((((((&))))))))))....)))))))	CGGGUCAUU--UGGUUUUGAA&UUCGAAAUCAUUUUUGAUCCG	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN20531_c0_g3_281_TPlot.pdf
TRINITY_DN2053_c0_g1:1106	si_a402	TRINITY_DN2053_c0_g1	1095	1115	1106	-22.40	-17.70	0.790178571428571	9	4-21,1112-1095	1-3,1115-1113[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGUGUGGACGAAGCAAUUAAU&UAGAAUUGUUUUGUUUAUAUU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN2053_c0_g1_1106_TPlot.pdf
TRINITY_DN20548_c1_g1:1188	si_s748	TRINITY_DN20548_c1_g1	1175	1197	1188	-29.20	-19.88	0.680821917808219	11	1-12,1197-1186;15-20,1181-1176	13-14,1185-1182[AILt];21-21,1175-1175[UP3]	.((((((....((((((((((((&))))))))))))--..)))))).	AGUUGUUAUUGGAGGUUGGUCUA&UAGAUUGACCUU--AAAACAACA	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s748_TRINITY_DN20548_c1_g1_1188_TPlot.pdf
TRINITY_DN2054_c0_g1:3001	si_a85	TRINITY_DN2054_c0_g1	2990	3011	3001	-25.00	-17.30	0.692	7	2-5,3010-3007;6-19,3005-2992	1-1,3011-3011[UP5];x-x,3006-3006[BULt];20-21,2991-2990[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	CAGCUUUUUCUUAAUAUGUGAU&UUCAU-UAUUAAGAAAAGGUAA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN2054_c0_g1_3001_TPlot.pdf
TRINITY_DN2054_c0_g1:3002	si_a84	TRINITY_DN2054_c0_g1	2991	3012	3002	-24.90	-17.30	0.694779116465864	8	3-6,3010-3007;7-20,3005-2992	1-2,3012-3011[UP5];x-x,3006-3006[BULt];21-21,2991-2991[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AGCUUUUUCUUAAUAUGUGAUA&UUUCAU-UAUUAAGAAAAGGUA	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN2054_c0_g1_3002_TPlot.pdf
TRINITY_DN2054_c0_g1:3003	si_a83	TRINITY_DN2054_c0_g1	2992	3013	3003	-24.50	-16.80	0.685714285714286	9	4-7,3010-3007;8-21,3005-2992	1-3,3013-3011[UP5];x-x,3006-3006[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GCUUUUUCUUAAUAUGUGAUAA&UUUUCAU-UAUUAAGAAAAGGU	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN2054_c0_g1_3003_TPlot.pdf
TRINITY_DN2054_c0_g1:319	si_s259	TRINITY_DN2054_c0_g1	308	328	319	-23.60	-16.70	0.707627118644068	10	1-13,328-316	14-21,315-308[UP3]	........(((((((((((((&)))))))))))))........	ACUUGUCGGGGUAGUAUAUCG&CGAUAUAUUACUCAAAAAAAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s259_TRINITY_DN2054_c0_g1_319_TPlot.pdf
TRINITY_DN2055_c0_g1:710	si_s83	TRINITY_DN2055_c0_g1	699	725	710	-30.90	-20.10	0.650485436893204	16.5	2-3,724-723;5-8,721-718;9-21,711-699	1-1,725-725[UP5];4-4,722-722[SIL];x-x,717-712[BULt]	(((((((((((((......((((.((.&.)).))))------)))))))))))))	GAAGAAGAGGAAAAUAUGUGGGAUGAU&UUCUUUCC------UUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2055_c0_g1_710_TPlot.pdf
TRINITY_DN20566_c0_g1:3806	si_s585	TRINITY_DN20566_c0_g1	3794	3815	3806	-27.00	-18.10	0.67037037037037	11	5-16,3811-3800;18-21,3797-3794	1-4,3815-3812[UP5];17-17,3799-3798[AILt]	((((..((((((((((((....&....))))))))))))-.))))	UGGAAAUUAUCCGUGGUUCUUG&AAAAAAUCAUGGAUAA-AUCCA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN20566_c0_g1_3806_TPlot.pdf
TRINITY_DN20566_c1_g1:3068	si_a454	TRINITY_DN20566_c1_g1	3057	3077	3068	-21.30	-16.00	0.751173708920188	5	1-9,3077-3069;11-19,3067-3059	10-10,3068-3068[SIL];20-21,3058-3057[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AUUUGUAUGUACCAACAAUUA&UAAUUGUUGUUAUAUAUAAUA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN20566_c1_g1_3068_TPlot.pdf
TRINITY_DN20566_c1_g1:3071	si_a451	TRINITY_DN20566_c1_g1	3060	3080	3071	-23.60	-17.30	0.733050847457627	4	2-12,3079-3069;14-21,3067-3060	1-1,3080-3080[UP5];13-13,3068-3068[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UGUAUGUACCAACAAUUAUUG&AGAUAAUUGUUGUUAUAUAUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN20566_c1_g1_3071_TPlot.pdf
TRINITY_DN20566_c1_g1:5162	si_a549	TRINITY_DN20566_c1_g1	5147	5171	5162	-29.50	-19.30	0.654237288135593	12.5	2-8,5170-5164;11-15,5161-5157;16-21,5152-5147	1-1,5171-5171[UP5];9-10,5163-5162[SIL];x-x,5156-5153[BULt]	((((((....(((((..(((((((.&.)))))))..)))))----))))))	GGAGGUCUUGGAGGAUUUGGGUUGG&UCAAUCUAUUUCUUU----AUCUCC	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN20566_c1_g1_5162_TPlot.pdf
TRINITY_DN20566_c1_g1:7335	si_a70	TRINITY_DN20566_c1_g1	7324	7344	7335	-23.90	-18.10	0.757322175732218	7.5	1-6,7344-7339;9-21,7336-7324	7-8,7338-7337[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	AAUGGGGAGCAAUAGGAGAGG&UCUUUCAAAUUGUUUUUCAUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN20566_c1_g1_7335_TPlot.pdf
TRINITY_DN20566_c2_g1:200	si_s573	TRINITY_DN20566_c2_g1	189	209	200	-28.40	-19.60	0.690140845070423	9	1-12,209-198	13-21,197-189[UP3]	.........((((((((((((&)))))))))))).........	CAUUAAUAAUAUUCCUUGUCC&GGACAAGGAAUAAAAAAAUCA	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s573_TRINITY_DN20566_c2_g1_200_TPlot.pdf
TRINITY_DN20566_c2_g1:202	si_s571	TRINITY_DN20566_c2_g1	191	211	202	-29.60	-19.60	0.662162162162162	10	3-14,209-198	1-2,211-210[UP5];15-21,197-191[UP3]	.......((((((((((((..&..)))))))))))).......	UUAAUAAUAUUCCUUGUCCAA&CGGGACAAGGAAUAAAAAAAU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN20566_c2_g1_202_TPlot.pdf
TRINITY_DN2056_c0_g1:1107	si_a413	TRINITY_DN2056_c0_g1	1096	1116	1107	-18.40	-12.80	0.695652173913044	7.5	1-11,1116-1106;14-19,1103-1098	12-13,1105-1104[SIL];20-21,1097-1096[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	CCAUUUGUGAAAGUGUAAACA&UGUUUAUAUUUAAAUAAAUAU	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN2056_c0_g1_1107_TPlot.pdf
TRINITY_DN2056_c0_g1:2259	si_s552	TRINITY_DN2056_c0_g1	2248	2268	2259	-21.10	-14.60	0.691943127962085	9.5	5-12,2264-2257;15-21,2254-2248	1-4,2268-2265[UP5];13-14,2256-2255[SIL]	(((((((..((((((((....&....))))))))..)))))))	CGAGAAUUGUAAUUCUAAAAC&AAAAUAGAAUUAAUAUUUUCG	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN2056_c0_g1_2259_TPlot.pdf
TRINITY_DN2056_c0_g1:2334	si_a397	TRINITY_DN2056_c0_g1	2324	2341	2334	-24.00	-17.10	0.7125	6	1-8,2341-2334;12-21,2333-2324	9-11,x-x[BULq]	((((((((((---((((((((&))))))))...))))))))))	AAACAAAACA---CUAUAUUC&GAAUAUAGAAUUGUUUUGUUU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN2056_c0_g1_2334_TPlot.pdf
TRINITY_DN2057_c0_g1:2413	si_s79	TRINITY_DN2057_c0_g1	2399	2422	2413	-26.20	-17.30	0.66030534351145	9.5	2-10,2421-2413;11-14,2410-2407;15-21,2405-2399	1-1,2422-2422[UP5];x-x,2412-2411[BULt];x-x,2406-2406[BULt]	(((((((.((((..(((((((((.&.)))))))))--))))-)))))))	AAGAAGAUGAGGUCGAAGAAGAGU&UUUUUUCUUU--CCUU-UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2057_c0_g1_2413_TPlot.pdf
TRINITY_DN2057_c0_g1:2462	si_s899	TRINITY_DN2057_c0_g1	2451	2471	2462	-28.30	-22.80	0.80565371024735	4.5	2-8,2470-2464;10-21,2462-2451	1-1,2471-2471[UP5];9-9,2463-2463[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	GAUUGAAAUUGAUGAGGAAGA&GCUUUCUCUUCAAUUUCAAUU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2057_c0_g1_2462_TPlot.pdf
TRINITY_DN2057_c0_g1:2463	si_s898	TRINITY_DN2057_c0_g1	2452	2472	2463	-30.70	-21.70	0.706840390879479	6	3-9,2470-2464;11-21,2462-2452	1-2,2472-2471[UP5];10-10,2463-2463[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AUUGAAAUUGAUGAGGAAGAA&GGCUUUCUCUUCAAUUUCAAU	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN2057_c0_g1_2463_TPlot.pdf
TRINITY_DN2057_c0_g1:3236	si_a648	TRINITY_DN2057_c0_g1	3225	3245	3236	-31.10	-20.80	0.668810289389068	6.5	2-14,3244-3232;16-18,3230-3228	1-1,3245-3245[UP5];15-15,3231-3231[SIL];19-21,3227-3225[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	AUCUUUGCGAUAUAUUGCUCU&UGAGUAAUAUAUCGGGAAAUG	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN2057_c0_g1_3236_TPlot.pdf
TRINITY_DN2057_c0_g1:3238	si_a646	TRINITY_DN2057_c0_g1	3227	3247	3238	-29.40	-20.80	0.707482993197279	8.5	4-16,3244-3232;18-20,3230-3228	1-3,3247-3245[UP5];17-17,3231-3231[SIL];21-21,3227-3227[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	CUUUGCGAUAUAUUGCUCUAG&UUUGAGUAAUAUAUCGGGAAA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN2057_c0_g1_3238_TPlot.pdf
TRINITY_DN2057_c0_g1:3240	si_a644	TRINITY_DN2057_c0_g1	3229	3249	3240	-29.30	-19.60	0.668941979522184	11.5	6-18,3244-3232;20-21,3230-3229	1-5,3249-3245[UP5];19-19,3231-3231[SIL]	((.(((((((((((((.....&.....))))))))))))).))	UUGCGAUAUAUUGCUCUAGGU&UUUUUGAGUAAUAUAUCGGGA	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN2057_c0_g1_3240_TPlot.pdf
TRINITY_DN2057_c0_g1:3242	si_a642	TRINITY_DN2057_c0_g1	3231	3251	3242	-25.90	-18.10	0.698841698841699	15	8-20,3244-3232	1-7,3251-3245[UP5];21-21,3231-3231[UP3]	.(((((((((((((.......&.......))))))))))))).	GCGAUAUAUUGCUCUAGGUCU&UUUUUUUGAGUAAUAUAUCGG	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN2057_c0_g1_3242_TPlot.pdf
TRINITY_DN2057_c0_g1:3243	si_a641	TRINITY_DN2057_c0_g1	3232	3252	3243	-23.60	-17.80	0.754237288135593	16	9-21,3244-3232	1-8,3252-3245[UP5]	(((((((((((((........&........)))))))))))))	CGAUAUAUUGCUCUAGGUCUA&AUUUUUUUGAGUAAUAUAUCG	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN2057_c0_g1_3243_TPlot.pdf
TRINITY_DN2057_c0_g1:3283	si_a866	TRINITY_DN2057_c0_g1	3272	3292	3283	-23.30	-15.50	0.665236051502146	14.5	8-21,3285-3272	1-7,3292-3286[UP5]	((((((((((((((.......&.......))))))))))))))	CAACUGAAUCUUUGCUUAAAU&CAAUUAUUAAAGAUUUAGUUG	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN2057_c0_g1_3283_TPlot.pdf
TRINITY_DN2057_c0_g1:3383	si_s78	TRINITY_DN2057_c0_g1	3372	3392	3383	-26.20	-17.80	0.679389312977099	7	1-16,3392-3377	17-21,3376-3372[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAACAAAGGAGAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2057_c0_g1_3383_TPlot.pdf
TRINITY_DN2057_c0_g1:5195	si_s58	TRINITY_DN2057_c0_g1	5184	5204	5195	-29.30	-20.10	0.686006825938567	6	2-10,5203-5195;12-18,5193-5187	1-1,5204-5204[UP5];11-11,5194-5194[SIL];19-21,5186-5184[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	UAAAGAAGUUUCUAACUUGAU&UUCAAGUUAGCAACUUCUAUU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN2057_c0_g1_5195_TPlot.pdf
TRINITY_DN2057_c0_g1:5296	si_a763	TRINITY_DN2057_c0_g1	5285	5305	5296	-28.80	-18.80	0.652777777777778	7.5	2-10,5304-5296;12-15,5294-5291;18-20,5288-5286	1-1,5305-5305[UP5];11-11,5295-5295[SIL];16-17,5290-5289[SIL];21-21,5285-5285[UP3]	.(((..((((.(((((((((.&.))))))))).))))..))).	GGAAGAGAUCUAGAACCCAAC&UUUGGGUUUUUGAUUGAUUCA	2	0.999999843420408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2057_c0_g1_5296_TPlot.pdf
TRINITY_DN20585_c0_g1:86	si_a495	TRINITY_DN20585_c0_g1	73	95	86	-31.90	-24.80	0.77742946708464	10	2-11,94-85;12-21,82-73	1-1,95-95[UP5];x-x,84-83[BULt]	((((((((((..((((((((((.&.))))))))))--))))))))))	GGAGGAUGAGAUGAACGGCAUGC&AUAUGUCGUUU--UUCGUCUUCC	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN20585_c0_g1_86_TPlot.pdf
TRINITY_DN2058_c0_g1:1113	si_a644	TRINITY_DN2058_c0_g1	1105	1122	1113	-29.30	-19.60	0.668941979522184	5.5	1-11,1122-1112;15-21,1111-1105	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	UCCUGAU---UUACUCAAAGA&UUUUUGAGUAAUAUAUCGGGA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN2058_c0_g1_1113_TPlot.pdf
TRINITY_DN20594_c0_g3:460	si_a84	TRINITY_DN20594_c0_g3	449	469	460	-24.90	-17.30	0.694779116465864	7	2-15,468-455;18-20,452-450	1-1,469-469[UP5];16-17,454-453[SIL];21-21,449-449[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	GGCCGAUUUUUAGUAGUGAAU&UUUCAUUAUUAAGAAAAGGUA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN20594_c0_g3_460_TPlot.pdf
TRINITY_DN205_c0_g1:1100	si_a408	TRINITY_DN205_c0_g1	1089	1109	1100	-20.10	-13.20	0.656716417910448	12	1-6,1109-1104;8-16,1102-1094	7-7,1103-1103[SIL];17-21,1093-1089[UP3]	.....(((((((((.((((((&)))))).))))))))).....	AUGUAGAGUGUAAAGGAGGCA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN205_c0_g1_1100_TPlot.pdf
TRINITY_DN205_c0_g1:1102	si_a406	TRINITY_DN205_c0_g1	1091	1111	1102	-19.80	-14.10	0.712121212121212	10.5	2-8,1110-1104;10-18,1102-1094	1-1,1111-1111[UP5];9-9,1103-1103[SIL];19-21,1093-1091[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GUAGAGUGUAAAGGAGGCAAG&AUUGUUUUGUUUAUAUUUAAA	4	0.999999998846462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN205_c0_g1_1102_TPlot.pdf
TRINITY_DN205_c0_g1:665	si_a399	TRINITY_DN205_c0_g1	654	674	665	-22.60	-14.80	0.654867256637168	13	6-19,669-656	1-5,674-670[UP5];20-21,655-654[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGGAACAGAACAAUUUACAGC&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999990202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN205_c0_g1_665_TPlot.pdf
TRINITY_DN205_c0_g1:846	si_a788	TRINITY_DN205_c0_g1	835	855	846	-24.80	-16.30	0.657258064516129	9	3-10,853-846;12-21,844-835	1-2,855-854[UP5];11-11,845-845[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UUGGAGGAUGAAAGAGUAGUU&UUCUAUUUUUCUAUUUUCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN205_c0_g1_846_TPlot.pdf
TRINITY_DN205_c0_g1:954	si_a388	TRINITY_DN205_c0_g1	944	963	954	-24.80	-17.30	0.69758064516129	6.5	1-10,963-954;13-20,952-945	11-12,953-953[AILq];21-21,944-944[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	UAUUCUAUGA-CUUAGUUCGA&UCGAAUUAAGAAUAUAGAAUU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a388_TRINITY_DN205_c0_g1_954_TPlot.pdf
TRINITY_DN205_c0_g1:955	si_a387	TRINITY_DN205_c0_g1	945	964	955	-24.90	-17.40	0.698795180722892	5.5	2-11,963-954;14-21,952-945	1-1,964-964[UP5];12-13,953-953[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	AUUCUAUGA-CUUAGUUCGAC&UUCGAAUUAAGAAUAUAGAAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a387_TRINITY_DN205_c0_g1_955_TPlot.pdf
TRINITY_DN205_c0_g1:956	si_a386	TRINITY_DN205_c0_g1	946	965	956	-24.80	-16.40	0.661290322580645	6.5	3-12,963-954;15-21,952-946	1-2,965-964[UP5];13-14,953-953[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	UUCUAUGA-CUUAGUUCGACA&UUUCGAAUUAAGAAUAUAGAA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN205_c0_g1_956_TPlot.pdf
TRINITY_DN2060_c0_g1:242	si_a763	TRINITY_DN2060_c0_g1	231	251	242	-28.80	-18.80	0.652777777777778	6	1-13,251-239;16-19,236-233	14-15,238-237[SIL];20-21,232-231[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	AAAAUCUUUCAAAGAUCCAAA&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999994503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2060_c0_g1_242_TPlot.pdf
TRINITY_DN20617_c0_g1:268	si_a502	TRINITY_DN20617_c0_g1	256	279	268	-32.10	-21.40	0.666666666666667	9.5	1-5,279-275;6-17,272-261;18-19,259-258	x-x,274-273[BULt];x-x,260-260[BULt];20-21,257-256[UP3]	..((.((((((((((((..(((((&)))))--))))))))))))-))..	CCUCACAGGGAAGAUGACGAAGAC&GUUUU--UCGUCUUCCUUG-GAAU	0	0.467074513977528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN20617_c0_g1_268_TPlot.pdf
TRINITY_DN20617_c0_g1:341	si_a80	TRINITY_DN20617_c0_g1	330	350	341	-22.10	-15.10	0.683257918552036	8	1-15,350-336	16-21,335-330[UP3]	......(((((((((((((((&)))))))))))))))......	UGGCGAUAAUAAUGGAGAACA&UGUUUUUCAUUAUUAAGAAAA	4	0.999961952797637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN20617_c0_g1_341_TPlot.pdf
TRINITY_DN2061_c0_g1:4845	si_a870	TRINITY_DN2061_c0_g1	4835	4854	4845	-24.80	-16.50	0.665322580645161	12	6-11,4849-4844;13-21,4843-4835	1-5,4854-4850[UP5];12-12,x-x[BULq]	(((((((((-((((((.....&.....)))))).)))))))))	GUUGCAGCU-AAUCUUGCAGG&UAUUAAAGAUUUAGUUGCAAU	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN2061_c0_g1_4845_TPlot.pdf
TRINITY_DN2061_c0_g1:990	si_a323	TRINITY_DN2061_c0_g1	975	999	990	-26.80	-17.50	0.652985074626866	7.5	1-14,999-986;15-18,982-979;19-20,977-976	x-x,985-983[BULt];x-x,978-978[BULt];21-21,975-975[UP3]	.((.((((...((((((((((((((&))))))))))))))---))))-)).	CAGAGAGUUAAAAGAAAAUCGUGGA&UCCAUGAUUUUUUU---AUUC-CUU	3	0.999999999236329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN2061_c0_g1_990_TPlot.pdf
TRINITY_DN2061_c0_g1:992	si_a321	TRINITY_DN2061_c0_g1	978	1001	992	-26.70	-18.60	0.696629213483146	6.5	1-16,1001-986;17-20,982-979	x-x,985-983[BULt];21-21,978-978[UP3]	.((((...((((((((((((((((&))))))))))))))))---)))).	AGAGUUAAAAGAAAAUCGUGGAUG&UAUCCAUGAUUUUUUU---AUUCC	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN2061_c0_g1_992_TPlot.pdf
TRINITY_DN2061_c0_g1:996	si_a317	TRINITY_DN2061_c0_g1	985	1005	996	-24.30	-19.60	0.806584362139918	8.5	4-20,1002-986	1-3,1005-1003[UP5];21-21,985-985[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGAAAAUCGUGGAUGACCG&GAUUUAUCCAUGAUUUUUUUA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2061_c0_g1_996_TPlot.pdf
TRINITY_DN20623_c0_g1:2216	si_a142	TRINITY_DN20623_c0_g1	2205	2225	2216	-23.50	-17.00	0.723404255319149	13.5	7-19,2219-2207	1-6,2225-2220[UP5];20-21,2206-2205[UP3]	..(((((((((((((......&......)))))))))))))..	UGAGAACAACAACGAAAAUGU&AAUUAAUCGUUGUUGUUUUAA	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN20623_c0_g1_2216_TPlot.pdf
TRINITY_DN20623_c0_g1:2366	si_a615	TRINITY_DN20623_c0_g1	2355	2375	2366	-35.50	-24.90	0.701408450704225	5.5	1-4,2375-2372;6-7,2370-2369;9-15,2367-2361;17-21,2359-2355	5-5,2371-2371[SIL];8-8,2368-2368[SIL];16-16,2360-2360[SIL]	(((((.(((((((.((.((((&)))).)).))))))).)))))	UAAUGAGCCUAGUGGAAUGGA&UCCAAUCGACUAGGCGUAUUA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a615_TRINITY_DN20623_c0_g1_2366_TPlot.pdf
TRINITY_DN20623_c0_g1:2367	si_a614	TRINITY_DN20623_c0_g1	2356	2376	2367	-35.20	-24.40	0.693181818181818	5.5	1-5,2376-2372;7-8,2370-2369;10-16,2367-2361;18-21,2359-2356	6-6,2371-2371[SIL];9-9,2368-2368[SIL];17-17,2360-2360[SIL]	((((.(((((((.((.(((((&))))).)).))))))).))))	AAUGAGCCUAGUGGAAUGGAA&UUCCAAUCGACUAGGCGUAUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a614_TRINITY_DN20623_c0_g1_2367_TPlot.pdf
TRINITY_DN20623_c0_g1:2409	si_s306	TRINITY_DN20623_c0_g1	2398	2417	2409	-32.30	-21.40	0.662538699690402	9	1-8,2417-2410;14-21,2405-2398	9-13,2409-2406[AILq]	((((((((....-((((((((&)))))))).....))))))))	GAAGGACACACA-UUCGCAAU&AUUGCGAAAAUUCUGUCCUUC	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN20623_c0_g1_2409_TPlot.pdf
TRINITY_DN2062_c0_g2:599	si_a410	TRINITY_DN2062_c0_g2	589	608	599	-17.80	-11.60	0.651685393258427	7.5	2-11,607-598;14-20,596-590	1-1,608-608[UP5];12-13,597-597[AILq];21-21,589-589[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	AUUGUUUAU-UGUAGACAAAU&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2062_c0_g2_599_TPlot.pdf
TRINITY_DN2062_c3_g1:1753	si_a448	TRINITY_DN2062_c3_g1	1742	1762	1753	-25.50	-16.60	0.650980392156863	8.5	2-5,1761-1758;7-17,1756-1746	1-1,1762-1762[UP5];6-6,1757-1757[SIL];18-21,1745-1742[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	ACAAGGCAGCAAUUACCUCAG&AUGAGAUAAUUGUUGUUAUAU	3	0.999995836868361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN2062_c3_g1_1753_TPlot.pdf
TRINITY_DN2062_c3_g1:1755	si_a446	TRINITY_DN2062_c3_g1	1744	1764	1755	-25.50	-16.60	0.650980392156863	10.5	4-7,1761-1758;9-19,1756-1746	1-3,1764-1762[UP5];8-8,1757-1757[SIL];20-21,1745-1744[UP3]	..(((((((((((.((((...&...)))).)))))))))))..	AAGGCAGCAAUUACCUCAGGA&AUAUGAGAUAAUUGUUGUUAU	4	0.999992852258198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN2062_c3_g1_1755_TPlot.pdf
TRINITY_DN2062_c3_g1:2057	si_s810	TRINITY_DN2062_c3_g1	2046	2066	2057	-27.90	-18.40	0.659498207885305	8.5	1-7,2066-2060;9-16,2058-2051	8-8,2059-2059[SIL];17-21,2050-2046[UP3]	.....((((((((.(((((((&))))))).)))))))).....	AAGGUGGGGAAGGCAACGAAG&CUUCGUUACCUUUUCUUAAUA	4	0.99999999855241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN2062_c3_g1_2057_TPlot.pdf
TRINITY_DN2062_c3_g1:2059	si_s808	TRINITY_DN2062_c3_g1	2048	2068	2059	-28.60	-20.00	0.699300699300699	7.5	2-9,2067-2060;11-18,2058-2051	1-1,2068-2068[UP5];10-10,2059-2059[SIL];19-21,2050-2048[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	GGUGGGGAAGGCAACGAAGAA&AUCUUCGUUACCUUUUCUUAA	4	0.99998152635743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2062_c3_g1_2059_TPlot.pdf
TRINITY_DN2062_c3_g1:2060	si_s807	TRINITY_DN2062_c3_g1	2049	2069	2060	-28.90	-20.00	0.69204152249135	8.5	3-10,2067-2060;12-19,2058-2051	1-2,2069-2068[UP5];11-11,2059-2059[SIL];20-21,2050-2049[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	GUGGGGAAGGCAACGAAGAAG&UAUCUUCGUUACCUUUUCUUA	4	0.999994646216814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2062_c3_g1_2060_TPlot.pdf
TRINITY_DN2062_c3_g1:2061	si_s806	TRINITY_DN2062_c3_g1	2050	2070	2061	-28.60	-20.00	0.699300699300699	9.5	4-11,2067-2060;13-20,2058-2051	1-3,2070-2068[UP5];12-12,2059-2059[SIL];21-21,2050-2050[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UGGGGAAGGCAACGAAGAAGA&UUAUCUUCGUUACCUUUUCUU	4	0.999993418734587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2062_c3_g1_2061_TPlot.pdf
TRINITY_DN2062_c3_g1:2093	si_a786	TRINITY_DN2062_c3_g1	2082	2102	2093	-26.60	-17.70	0.665413533834586	9	1-15,2102-2088	16-21,2087-2082[UP3]	......(((((((((((((((&)))))))))))))))......	UCACGUUAGAAGAAUGGAGGA&UCUUCUAUUUUUCUAUUUUCC	2	0.999999992004052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2062_c3_g1_2093_TPlot.pdf
TRINITY_DN2062_c3_g1:2095	si_a784	TRINITY_DN2062_c3_g1	2084	2104	2095	-24.70	-17.90	0.724696356275304	10	3-17,2102-2088	1-2,2104-2103[UP5];18-21,2087-2084[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACGUUAGAAGAAUGGAGGAAC&ACUCUUCUAUUUUUCUAUUUU	2	0.999576262700615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2062_c3_g1_2095_TPlot.pdf
TRINITY_DN2062_c3_g1:2097	si_a782	TRINITY_DN2062_c3_g1	2086	2106	2097	-26.40	-17.90	0.678030303030303	11.5	5-19,2102-2088	1-4,2106-2103[UP5];20-21,2087-2086[UP3]	..(((((((((((((((....&....)))))))))))))))..	GUUAGAAGAAUGGAGGAACAC&CAACUCUUCUAUUUUUCUAUU	2	0.999852888465746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2062_c3_g1_2097_TPlot.pdf
TRINITY_DN2062_c3_g1:2172	si_s71	TRINITY_DN2062_c3_g1	2156	2181	2172	-25.70	-16.80	0.653696498054475	10.5	2-13,2180-2169;14-20,2163-2157	1-1,2181-2181[UP5];x-x,2168-2164[BULt];21-21,2156-2156[UP3]	.(((((((.....((((((((((((.&.))))))))))))-----))))))).	UGGGAAGACCACCAAAAAGAUGGAGA&CUUCUAUUUUUUU-----UCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2062_c3_g1_2172_TPlot.pdf
TRINITY_DN2062_c3_g1:2183	si_a784	TRINITY_DN2062_c3_g1	2172	2194	2183	-24.70	-16.60	0.672064777327935	9.5	1-3,2194-2192;4-5,2190-2189;7-21,2186-2172	x-x,2191-2191[BULt];6-6,2188-2187[AILt]	(((((((((((((((..((.(((&)))-))-.)))))))))))))))	AAGAUGGAGAGAUAGCUGGCAGU&ACU-CU-UCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2062_c3_g1_2183_TPlot.pdf
TRINITY_DN2062_c3_g1:580	si_a492	TRINITY_DN2062_c3_g1	567	589	580	-30.20	-20.00	0.662251655629139	9	4-17,586-573;18-20,570-568	1-3,589-587[UP5];x-x,572-571[BULt];21-21,567-567[UP3]	.(((..((((((((((((((...&...))))))))))))))--))).	CGACAUGGAGAACGACAUAUAUG&AGAAUAUGUCGUUUUUC--GUCU	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN2062_c3_g1_580_TPlot.pdf
TRINITY_DN2062_c4_g1:385	si_s116	TRINITY_DN2062_c4_g1	374	394	385	-24.70	-16.20	0.65587044534413	9.5	5-10,390-385;12-21,383-374	1-4,394-391[UP5];11-11,384-384[SIL]	((((((((((.((((((....&....)))))).))))))))))	AUUCUUCUAUCUUUCUAAAAU&AAAAUAGAAAAAUAGAAGAGU	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN2062_c4_g1_385_TPlot.pdf
TRINITY_DN20637_c0_g1:2001	si_a410	TRINITY_DN20637_c0_g1	1990	2010	2001	-17.80	-14.50	0.814606741573034	5	1-19,2010-1992	20-21,1991-1990[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACUAUUUGGAUAUAAAUGAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN20637_c0_g1_2001_TPlot.pdf
TRINITY_DN20637_c0_g1:2002	si_a409	TRINITY_DN20637_c0_g1	1991	2011	2002	-19.50	-14.50	0.743589743589744	5	2-20,2010-1992	1-1,2011-2011[UP5];21-21,1991-1991[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CUAUUUGGAUAUAAAUGAAAA&GUUUUGUUUAUAUUUAAAUAA	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN20637_c0_g1_2002_TPlot.pdf
TRINITY_DN20637_c0_g2:136	si_a410	TRINITY_DN20637_c0_g2	125	145	136	-17.80	-14.60	0.820224719101123	6	1-19,145-127	20-21,126-125[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACUAUUUGGAUAUAGAUGAAA&UUUUGUUUAUAUUUAAAUAAA	1	0.0127308534051768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN20637_c0_g2_136_TPlot.pdf
TRINITY_DN20647_c0_g1:37	si_s67	TRINITY_DN20647_c0_g1	26	49	37	-25.60	-17.20	0.671875	11.5	1-3,49-47;4-11,43-36;13-20,34-27	x-x,46-44[BULt];12-12,35-35[SIL];21-21,26-26[UP3]	.((((((((.((((((((...(((&)))---)))))))).)))))))).	CAGGAAAAAUAUGGAGGUUCUUGC&GCA---ACUUCUAUUUUUUUUCUU	4	0.999999999908935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN20647_c0_g1_37_TPlot.pdf
TRINITY_DN20660_c0_g1:807	si_a71	TRINITY_DN20660_c0_g1	790	816	807	-23.30	-15.96	0.684978540772532	17	1-12,816-805;14-20,797-791	13-13,804-798[AILt];21-21,790-790[UP3]	.(((((((.......((((((((((((&))))))))))))------.))))))).	AGAUGAAGUUUUUUUACAGUUUGAGAG&CUUUCAAAUUGU------UUUUCAUUA	4	0.999999965227629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN20660_c0_g1_807_TPlot.pdf
TRINITY_DN20660_c0_g1:808	si_a70	TRINITY_DN20660_c0_g1	791	817	808	-23.90	-15.66	0.655230125523013	10.5	1-13,817-805;15-21,797-791	14-14,804-798[AILt]	(((((((.......(((((((((((((&)))))))))))))------.)))))))	GAUGAAGUUUUUUUACAGUUUGAGAGG&UCUUUCAAAUUGU------UUUUCAUU	0	0.509300166833143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN20660_c0_g1_808_TPlot.pdf
TRINITY_DN2066_c0_g1:2192	si_a604	TRINITY_DN2066_c0_g1	2182	2201	2192	-31.60	-21.90	0.693037974683544	8	2-15,2200-2187;17-19,2186-2184	1-1,2201-2201[UP5];16-16,x-x[BULq];20-21,2183-2182[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	AGCGA-UGGGGUUGCGAGAGG&AUUUUCGCAAUUCCAAUCGAC	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN2066_c0_g1_2192_TPlot.pdf
TRINITY_DN2066_c0_g1:2509	si_a502	TRINITY_DN2066_c0_g1	2498	2518	2509	-32.10	-22.10	0.688473520249221	9	1-11,2518-2508;14-18,2505-2501	12-13,2507-2506[SIL];19-21,2500-2498[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	UUGCCAAGCUGGACGAAGAGC&GUUUUUCGUCUUCCUUGGAAU	4	0.999999807106365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2066_c0_g1_2509_TPlot.pdf
TRINITY_DN2066_c0_g1:2510	si_a501	TRINITY_DN2066_c0_g1	2499	2519	2510	-33.50	-22.50	0.671641791044776	8	2-12,2518-2508;15-19,2505-2501	1-1,2519-2519[UP5];13-14,2507-2506[SIL];20-21,2500-2499[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	UGCCAAGCUGGACGAAGAGCU&CGUUUUUCGUCUUCCUUGGAA	3	0.999999991154675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2066_c0_g1_2510_TPlot.pdf
TRINITY_DN2066_c0_g1:2511	si_a500	TRINITY_DN2066_c0_g1	2500	2520	2511	-34.40	-22.50	0.654069767441861	8.5	3-13,2518-2508;16-20,2505-2501	1-2,2520-2519[UP5];14-15,2507-2506[SIL];21-21,2500-2500[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	GCCAAGCUGGACGAAGAGCUC&UCGUUUUUCGUCUUCCUUGGA	3	0.999999999981206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2066_c0_g1_2511_TPlot.pdf
TRINITY_DN2066_c0_g1:2972	si_a436	TRINITY_DN2066_c0_g1	2959	2983	2972	-33.80	-23.50	0.695266272189349	9.5	1-5,2983-2979;6-15,2976-2967;16-20,2964-2960	x-x,2978-2977[BULt];x-x,2966-2965[BULt];21-21,2959-2959[UP3]	.(((((..((((((((((..(((((&)))))--))))))))))--))))).	AUGUCUAGCAUAUCCAGCCGGGGUC&GAUCC--GUUGGAUAUG--AGAUAA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a436_TRINITY_DN2066_c0_g1_2972_TPlot.pdf
TRINITY_DN20676_c0_g1:151	si_s552	TRINITY_DN20676_c0_g1	140	160	151	-21.10	-15.20	0.720379146919431	6	3-19,158-142	1-2,160-159[UP5];20-21,141-140[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CUAAAAUAUUAAUUCUGUUCG&AAAAUAGAAUUAAUAUUUUCG	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN20676_c0_g1_151_TPlot.pdf
TRINITY_DN20676_c0_g1:152	si_s551	TRINITY_DN20676_c0_g1	141	161	152	-21.30	-15.20	0.713615023474178	7	4-20,158-142	1-3,161-159[UP5];21-21,141-141[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAAAUAUUAAUUCUGUUCGA&CAAAAUAGAAUUAAUAUUUUC	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN20676_c0_g1_152_TPlot.pdf
TRINITY_DN20676_c0_g1:153	si_s550	TRINITY_DN20676_c0_g1	142	162	153	-20.30	-15.20	0.748768472906404	8	5-21,158-142	1-4,162-159[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAAUAUUAAUUCUGUUCGAC&UCAAAAUAGAAUUAAUAUUUU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN20676_c0_g1_153_TPlot.pdf
TRINITY_DN20676_c0_g1:154	si_s549	TRINITY_DN20676_c0_g1	143	163	154	-20.50	-14.50	0.707317073170732	10	6-21,158-143	1-5,163-159[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAUAUUAAUUCUGUUCGACU&AUCAAAAUAGAAUUAAUAUUU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN20676_c0_g1_154_TPlot.pdf
TRINITY_DN20693_c0_g1:1030	si_a634	TRINITY_DN20693_c0_g1	1019	1039	1030	-26.40	-20.20	0.765151515151515	7.5	3-6,1037-1034;8-19,1032-1021	1-2,1039-1038[UP5];7-7,1033-1033[SIL];20-21,1020-1019[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	GAACUCAGAAAAAUGGACAGA&UAUGUCGAUUUUUUUGAGUAA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN20693_c0_g1_1030_TPlot.pdf
TRINITY_DN206_c0_g1:2285	si_a548	TRINITY_DN206_c0_g1	2272	2294	2285	-27.20	-17.70	0.650735294117647	6.5	1-11,2294-2284;12-17,2282-2277;19-21,2274-2272	x-x,2283-2283[BULt];18-18,2276-2275[AILt]	(((..((((((.(((((((((((&)))))))))))-))))))-.)))	GGGUUUGGAGAUAAUAGAUUGGA&UUCAAUCUAUU-UCUUUA-UCUC	0	0.256715306210678	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN206_c0_g1_2285_TPlot.pdf
TRINITY_DN206_c0_g1:487	si_s80	TRINITY_DN206_c0_g1	476	496	487	-28.20	-20.70	0.734042553191489	7	1-17,496-480	18-21,479-476[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAUUGGGAAAGGAGAGAAAGA&UUUUUCUUUCCUUUCUUCUUC	2	0.999999902426026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN206_c0_g1_487_TPlot.pdf
TRINITY_DN206_c0_g1:488	si_s79	TRINITY_DN206_c0_g1	477	497	488	-26.20	-20.90	0.797709923664122	7	2-18,496-480	1-1,497-497[UP5];19-21,479-477[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUUGGGAAAGGAGAGAAAGAU&UUUUUUCUUUCCUUUCUUCUU	2	0.999392074706159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN206_c0_g1_488_TPlot.pdf
TRINITY_DN206_c0_g1:490	si_s77	TRINITY_DN206_c0_g1	479	499	490	-25.50	-20.90	0.819607843137255	9	4-20,496-480	1-3,499-497[UP5];21-21,479-479[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGGGAAAGGAGAGAAAGAUUC&UUUUUUUUCUUUCCUUUCUUC	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN206_c0_g1_490_TPlot.pdf
TRINITY_DN206_c0_g1:494	si_s73	TRINITY_DN206_c0_g1	483	504	494	-24.00	-17.80	0.741666666666667	11.5	1-3,504-502;8-21,496-483	4-7,501-497[AILt]	((((((((((((((.....(((&)))-....))))))))))))))	AAAGGAGAGAAAGAUUCUGAGA&UCU-AUUUUUUUUCUUUCCUUU	4	0.999999999903117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN206_c0_g1_494_TPlot.pdf
TRINITY_DN20713_c0_g1:712	si_s68	TRINITY_DN20713_c0_g1	702	721	712	-23.10	-15.60	0.675324675324675	5.5	3-16,719-706;18-20,705-703	1-2,721-720[UP5];17-17,x-x[BULq];21-21,702-702[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	UAAG-AGAAAAAUAGAAGUAG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN20713_c0_g1_712_TPlot.pdf
TRINITY_DN20717_c0_g1:1011	si_s41	TRINITY_DN20717_c0_g1	999	1020	1011	-25.00	-17.70	0.708	4.5	2-10,1019-1011;12-19,1009-1002;20-21,1000-999	1-1,1020-1020[UP5];11-11,1010-1010[SIL];x-x,1001-1001[BULt]	((.((((((((.(((((((((.&.))))))))).))))))))-))	UGAAGAUCCAAAUAUUAAAGAA&AUCUUUAAUAAUUGGAUUU-CA	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN20717_c0_g1_1011_TPlot.pdf
TRINITY_DN20717_c0_g1:1012	si_s40	TRINITY_DN20717_c0_g1	1001	1021	1012	-24.30	-17.10	0.703703703703704	6.5	3-11,1019-1011;13-20,1009-1002	1-2,1021-1020[UP5];12-12,1010-1010[SIL];21-21,1001-1001[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AAGAUCCAAAUAUUAAAGAAC&AAUCUUUAAUAAUUGGAUUUC	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN20717_c0_g1_1012_TPlot.pdf
TRINITY_DN20717_c0_g1:1013	si_s39	TRINITY_DN20717_c0_g1	1002	1022	1013	-22.30	-17.10	0.766816143497758	6.5	4-12,1019-1011;14-21,1009-1002	1-3,1022-1020[UP5];13-13,1010-1010[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AGAUCCAAAUAUUAAAGAACA&AAAUCUUUAAUAAUUGGAUUU	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN20717_c0_g1_1013_TPlot.pdf
TRINITY_DN20717_c0_g1:1101	si_s18	TRINITY_DN20717_c0_g1	1088	1110	1101	-27.50	-17.90	0.650909090909091	6.5	1-12,1110-1099;14-17,1098-1095;18-21,1091-1088	13-13,x-x[BULq];x-x,1094-1092[BULt]	((((...((((-((((((((((((&)))))))))))).))))---))))	AGUUGAGGCAG-CAAUAUGGUGAU&AUUACUAUAUUGAUUGC---AACU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN20717_c0_g1_1101_TPlot.pdf
TRINITY_DN20717_c0_g1:1102	si_s17	TRINITY_DN20717_c0_g1	1092	1111	1102	-27.20	-18.70	0.6875	6.5	1-13,1111-1099;15-18,1098-1095	14-14,x-x[BULq];19-21,1094-1092[UP3]	...((((-(((((((((((((&))))))))))))).))))...	GAGGCAG-CAAUAUGGUGAUA&UAUUACUAUAUUGAUUGCAAC	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN20717_c0_g1_1102_TPlot.pdf
TRINITY_DN20717_c0_g1:1104	si_s15	TRINITY_DN20717_c0_g1	1094	1113	1104	-25.60	-18.90	0.73828125	7.5	3-15,1111-1099;17-20,1098-1095	1-2,1113-1112[UP5];16-16,x-x[BULq];21-21,1094-1094[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	GGCAG-CAAUAUGGUGAUAUU&AUUAUUACUAUAUUGAUUGCA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN20717_c0_g1_1104_TPlot.pdf
TRINITY_DN20717_c0_g1:2094	si_a322	TRINITY_DN20717_c0_g1	2085	2103	2094	-27.00	-18.40	0.681481481481481	5	2-14,2102-2090;18-21,2088-2085	1-1,2103-2103[UP5];15-17,2089-2089[AILq]	((((.--(((((((((((((.&.)))))))))))))...))))	AGGAC--AAAGAAUCAUGGAC&AUCCAUGAUUUUUUUAUUCCU	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN20717_c0_g1_2094_TPlot.pdf
TRINITY_DN20717_c0_g1:745	si_a486	TRINITY_DN20717_c0_g1	734	756	745	-24.90	-16.60	0.666666666666667	10.5	2-9,755-748;11-19,744-736	1-1,756-756[UP5];10-10,747-745[AILt];20-21,735-734[UP3]	..(((((((((...((((((((.&.))))))))--.)))))))))..	UCAGCGACAUGGAAUCUAUAUAU&UUAUAUAGA--AUAUGUCGUUUU	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN20717_c0_g1_745_TPlot.pdf
TRINITY_DN20717_c0_g1:853	si_a75	TRINITY_DN20717_c0_g1	842	862	853	-21.30	-15.30	0.71830985915493	7.5	3-6,860-857;8-20,855-843	1-2,862-861[UP5];7-7,856-856[SIL];21-21,842-842[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	CUAAUGAUGAAAAAGAGUUAC&CAAAUUGUUUUUCAUUAUUAA	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN20717_c0_g1_853_TPlot.pdf
TRINITY_DN20717_c0_g1:854	si_a74	TRINITY_DN20717_c0_g1	843	863	854	-22.20	-15.00	0.675675675675676	8.5	4-7,860-857;9-21,855-843	1-3,863-861[UP5];8-8,856-856[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UAAUGAUGAAAAAGAGUUACG&UCAAAUUGUUUUUCAUUAUUA	4	0.999999979669509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN20717_c0_g1_854_TPlot.pdf
TRINITY_DN2072_c0_g1:273	si_s661	TRINITY_DN2072_c0_g1	262	286	273	-35.40	-23.30	0.65819209039548	14	2-7,285-280;8-17,275-266	1-1,286-286[UP5];x-x,279-276[BULt];18-21,265-262[UP3]	....((((((((((....((((((.&.))))))----))))))))))....	AACACAAUUCGGUCUGAUCCCCGAC&AUCGGGG----GAUCGAAUUGAUUA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN2072_c0_g1_273_TPlot.pdf
TRINITY_DN2072_c0_g1:274	si_s660	TRINITY_DN2072_c0_g1	263	287	274	-35.00	-23.30	0.665714285714286	15	3-8,285-280;9-18,275-266	1-2,287-286[UP5];x-x,279-276[BULt];19-21,265-263[UP3]	...((((((((((....((((((..&..))))))----))))))))))...	ACACAAUUCGGUCUGAUCCCCGACC&AAUCGGGG----GAUCGAAUUGAUU	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN2072_c0_g1_274_TPlot.pdf
TRINITY_DN2072_c0_g1:369	si_a142	TRINITY_DN2072_c0_g1	358	378	369	-23.50	-16.60	0.706382978723404	15	7-19,372-360	1-6,378-373[UP5];20-21,359-358[UP3]	..(((((((((((((......&......)))))))))))))..	CGAAAGCAGCGACGAAUCGAA&AAUUAAUCGUUGUUGUUUUAA	4	0.999989635785725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2072_c0_g1_369_TPlot.pdf
TRINITY_DN2072_c0_g1:370	si_a141	TRINITY_DN2072_c0_g1	359	379	370	-23.80	-16.60	0.697478991596639	16	8-20,372-360	1-7,379-373[UP5];21-21,359-359[UP3]	.(((((((((((((.......&.......))))))))))))).	GAAAGCAGCGACGAAUCGAAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2072_c0_g1_370_TPlot.pdf
TRINITY_DN2072_c0_g1:441	si_a635	TRINITY_DN2072_c0_g1	431	450	441	-26.10	-17.30	0.662835249042146	7	1-15,450-436;17-18,435-434	16-16,x-x[BULq];19-21,433-431[UP3]	...((-(((((((((((((((&))))))))))))))).))...	UCCGC-CGAGAAAAUCGAUAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999999999985845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2072_c0_g1_441_TPlot.pdf
TRINITY_DN2072_c0_g1:442	si_a634	TRINITY_DN2072_c0_g1	432	451	442	-26.40	-17.30	0.65530303030303	6.5	2-16,450-436;18-19,435-434	1-1,451-451[UP5];17-17,x-x[BULq];20-21,433-432[UP3]	..((-(((((((((((((((.&.))))))))))))))).))..	CCGC-CGAGAAAAUCGAUAUU&UAUGUCGAUUUUUUUGAGUAA	2	0.999999442717865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN2072_c0_g1_442_TPlot.pdf
TRINITY_DN2072_c0_g1:443	si_a633	TRINITY_DN2072_c0_g1	433	452	443	-26.40	-17.30	0.65530303030303	7.5	3-17,450-436;19-20,435-434	1-2,452-451[UP5];18-18,x-x[BULq];21-21,433-433[UP3]	.((-(((((((((((((((..&..))))))))))))))).)).	CGC-CGAGAAAAUCGAUAUUA&UUAUGUCGAUUUUUUUGAGUA	2	0.999999673677147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2072_c0_g1_443_TPlot.pdf
TRINITY_DN2072_c0_g1:444	si_a632	TRINITY_DN2072_c0_g1	434	453	444	-26.10	-17.10	0.655172413793103	8.5	4-18,450-436;20-21,435-434	1-3,453-451[UP5];19-19,x-x[BULq]	((-(((((((((((((((...&...))))))))))))))).))	GC-CGAGAAAAUCGAUAUUAA&AUUAUGUCGAUUUUUUUGAGU	3	0.999999999860557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2072_c0_g1_444_TPlot.pdf
TRINITY_DN2072_c0_g1:446	si_a630	TRINITY_DN2072_c0_g1	435	456	446	-25.80	-17.42	0.675193798449612	11	1-2,456-455;6-20,450-436	3-5,454-451[AILt];21-21,435-435[UP3]	.(((((((((((((((....((&))-...))))))))))))))).	CCGAGAAAAUCGAUAUUAAGAC&GU-AUUAUGUCGAUUUUUUUGA	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN2072_c0_g1_446_TPlot.pdf
TRINITY_DN2072_c0_g1:447	si_a629	TRINITY_DN2072_c0_g1	436	457	447	-26.30	-18.12	0.688973384030418	10	1-3,457-455;7-21,450-436	4-6,454-451[AILt]	(((((((((((((((....(((&)))-...)))))))))))))))	CGAGAAAAUCGAUAUUAAGACG&CGU-AUUAUGUCGAUUUUUUUG	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN2072_c0_g1_447_TPlot.pdf
TRINITY_DN2072_c0_g1:448	si_a628	TRINITY_DN2072_c0_g1	437	458	448	-27.10	-20.42	0.753505535055351	10	1-4,458-455;8-21,450-437	5-7,454-451[AILt]	((((((((((((((....((((&))))-...))))))))))))))	GAGAAAAUCGAUAUUAAGACGC&GCGU-AUUAUGUCGAUUUUUUU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN2072_c0_g1_448_TPlot.pdf
TRINITY_DN2072_c0_g1:449	si_a627	TRINITY_DN2072_c0_g1	438	459	449	-29.50	-19.22	0.651525423728814	10.5	2-5,458-455;9-21,450-438	1-1,459-459[UP5];6-8,454-451[AILt]	(((((((((((((....((((.&.))))-...)))))))))))))	AGAAAAUCGAUAUUAAGACGCA&GGCGU-AUUAUGUCGAUUUUUU	3	0.999999941876609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN2072_c0_g1_449_TPlot.pdf
TRINITY_DN2072_c0_g1:604	si_a870	TRINITY_DN2072_c0_g1	593	613	604	-24.80	-16.20	0.653225806451613	12.5	7-15,607-599;17-21,597-593	1-6,613-608[UP5];16-16,598-598[SIL]	(((((.(((((((((......&......))))))))).)))))	AUUGCCGCUAAAUCUAUUCCA&UAUUAAAGAUUUAGUUGCAAU	4	0.999950241653235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN2072_c0_g1_604_TPlot.pdf
TRINITY_DN2073_c0_g1:1038	si_s74	TRINITY_DN2073_c0_g1	1027	1049	1038	-25.00	-17.90	0.716	10.5	1-9,1049-1041;10-19,1038-1029	x-x,1040-1039[BULt];20-21,1028-1027[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	UUGAGGAAAGAGCUAAGGAGUAG&CUAUUUUUU--UUCUUUCCUUUC	2	0.999999902426026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2073_c0_g1_1038_TPlot.pdf
TRINITY_DN2073_c0_g1:1042	si_s72	TRINITY_DN2073_c0_g1	1029	1051	1042	-24.10	-19.90	0.825726141078838	9	1-11,1051-1041;12-21,1038-1029	x-x,1040-1039[BULt]	((((((((((..(((((((((((&)))))))))))--))))))))))	GAGGAAAGAGCUAAGGAGUAGAG&UUCUAUUUUUU--UUCUUUCCUU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2073_c0_g1_1042_TPlot.pdf
TRINITY_DN2073_c0_g1:1045	si_s69	TRINITY_DN2073_c0_g1	1032	1054	1045	-23.40	-19.00	0.811965811965812	7.5	2-14,1053-1041;15-21,1038-1032	1-1,1054-1054[UP5];x-x,1040-1039[BULt]	(((((((..(((((((((((((.&.)))))))))))))--)))))))	GAAAGAGCUAAGGAGUAGAGGUG&AACUUCUAUUUUUU--UUCUUUC	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2073_c0_g1_1045_TPlot.pdf
TRINITY_DN2073_c0_g1:1046	si_s68	TRINITY_DN2073_c0_g1	1033	1055	1046	-23.10	-15.80	0.683982683982684	9	3-15,1053-1041;16-21,1038-1033	1-2,1055-1054[UP5];x-x,1040-1039[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AAAGAGCUAAGGAGUAGAGGUGU&CAACUUCUAUUUUUU--UUCUUU	2	0.999999999742363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2073_c0_g1_1046_TPlot.pdf
TRINITY_DN2073_c0_g1:207	si_s161	TRINITY_DN2073_c0_g1	194	216	207	-41.50	-28.60	0.689156626506024	11.5	1-11,216-206;13-17,202-198	12-12,205-203[AILt];18-21,197-194[UP3]	....(((((...(((((((((((&)))))))))))--.)))))....	UAAGACCCUGCCGGCCAUGAGCC&GGUUCAUGGCC--AGGGGUAAAG	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN2073_c0_g1_207_TPlot.pdf
TRINITY_DN2073_c0_g1:210	si_s158	TRINITY_DN2073_c0_g1	197	220	210	-44.90	-32.40	0.721603563474387	7.5	1-2,220-219;3-14,217-206;16-20,202-198	x-x,218-218[BULt];15-15,205-203[AILt];21-21,197-197[UP3]	.(((((...((((((((((((.((&))-))))))))))))--.))))).	GACCCUGCCGGCCAUGAGCCUGCC&GG-AGGUUCAUGGCC--AGGGGUA	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN2073_c0_g1_210_TPlot.pdf
TRINITY_DN2073_c0_g1:211	si_s157	TRINITY_DN2073_c0_g1	198	221	211	-45.20	-32.20	0.712389380530973	7.5	2-3,220-219;4-15,217-206;17-21,202-198	1-1,221-221[UP5];x-x,218-218[BULt];16-16,205-203[AILt]	(((((...((((((((((((.((.&.))-))))))))))))--.)))))	ACCCUGCCGGCCAUGAGCCUGCCC&AGG-AGGUUCAUGGCC--AGGGGU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN2073_c0_g1_211_TPlot.pdf
TRINITY_DN2073_c0_g1:213	si_s155	TRINITY_DN2073_c0_g1	199	223	213	-42.00	-31.10	0.740476190476191	11	4-5,220-219;6-17,217-206;18-21,202-199	1-3,223-221[UP5];x-x,218-218[BULt];x-x,205-203[BULt]	((((...((((((((((((.((...&...))-))))))))))))---))))	CCCUGCCGGCCAUGAGCCUGCCCGC&AAAGG-AGGUUCAUGGCC---AGGG	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN2073_c0_g1_213_TPlot.pdf
TRINITY_DN2073_c0_g1:214	si_s154	TRINITY_DN2073_c0_g1	204	224	214	-41.30	-28.00	0.677966101694915	11	5-6,220-219;7-18,217-206;20-21,205-204	1-4,224-221[UP5];x-x,218-218[BULt];19-19,x-x[BULq]	((-((((((((((((.((....&....))-)))))))))))).))	CC-GGCCAUGAGCCUGCCCGCA&CAAAGG-AGGUUCAUGGCCAGG	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s154_TRINITY_DN2073_c0_g1_214_TPlot.pdf
TRINITY_DN2073_c0_g1:243	si_a498	TRINITY_DN2073_c0_g1	232	253	243	-33.50	-22.00	0.656716417910448	12.5	2-5,252-249;8-9,246-245;11-20,242-233	1-1,253-253[UP5];6-7,248-247[SIL];10-10,244-243[AILt];21-21,232-232[UP3]	.((((((((((..((..((((.&.))))..))-.)))))))))).	UGAGGAGGGCGUCGAUUCGACG&UGUCGUUUU-UCGUCUUCCUUG	2	0.999999996971295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2073_c0_g1_243_TPlot.pdf
TRINITY_DN2073_c0_g1:245	si_a497	TRINITY_DN2073_c0_g1	233	254	245	-32.00	-21.70	0.678125	13.5	3-6,252-249;9-10,246-245;12-21,242-233	1-2,254-253[UP5];7-8,248-247[SIL];11-11,244-243[AILt]	((((((((((..((..((((..&..))))..))-.))))))))))	GAGGAGGGCGUCGAUUCGACGA&AUGUCGUUUU-UCGUCUUCCUU	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2073_c0_g1_245_TPlot.pdf
TRINITY_DN2073_c0_g1:774	si_s160	TRINITY_DN2073_c0_g1	763	784	774	-40.60	-27.40	0.67487684729064	11	2-8,783-777;9-18,775-766	1-1,784-784[UP5];x-x,776-776[BULt];19-21,765-763[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	GGCGCUCCUGGUCUGUGGGCCG&AGGUUCAU-GGCCAGGGGUAAA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN2073_c0_g1_774_TPlot.pdf
TRINITY_DN2073_c0_g1:825	si_s618	TRINITY_DN2073_c0_g1	814	834	825	-30.30	-20.90	0.68976897689769	10.5	4-9,831-826;12-21,823-814	1-3,834-832[UP5];10-11,825-824[SIL]	((((((((((..((((((...&...))))))..))))))))))	GGGGAGAUCGAGUGGAUUCCG&UUAAAUCCAAGCGAUCUUUUC	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN2073_c0_g1_825_TPlot.pdf
TRINITY_DN20760_c0_g1:548	si_s295	TRINITY_DN20760_c0_g1	537	558	548	-32.20	-22.60	0.701863354037267	10	1-7,558-552;9-18,549-540	8-8,551-550[AILt];19-21,539-537[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	GGCUCGCGGUUCUCUAUCGGCU&AGUCGAU-UGGAAUUGCGAAAA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN20760_c0_g1_548_TPlot.pdf
TRINITY_DN20760_c0_g1:549	si_s294	TRINITY_DN20760_c0_g1	538	559	549	-32.60	-23.40	0.717791411042945	9.5	1-8,559-552;10-19,549-540	9-9,551-550[AILt];20-21,539-538[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	GCUCGCGGUUCUCUAUCGGCUG&UAGUCGAU-UGGAAUUGCGAAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN20760_c0_g1_549_TPlot.pdf
TRINITY_DN20762_c0_g1:1107	si_a75	TRINITY_DN20762_c0_g1	1087	1116	1107	-21.30	-14.80	0.694835680751174	22.5	1-10,1116-1107;11-20,1097-1088	x-x,1106-1098[BULt];21-21,1087-1087[UP3]	.((((((((((.........((((((((((&))))))))))---------)))))))))).	CUGAUAAUGGAUUUCAUAUAGGACAAUUUG&CAAAUUGUUU---------UUCAUUAUUAA	4	0.999999803083204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN20762_c0_g1_1107_TPlot.pdf
TRINITY_DN20762_c0_g1:1108	si_a74	TRINITY_DN20762_c0_g1	1088	1117	1108	-22.20	-14.60	0.657657657657658	22	2-11,1116-1107;12-21,1097-1088	1-1,1117-1117[UP5];x-x,1106-1098[BULt]	((((((((((.........((((((((((.&.))))))))))---------))))))))))	UGAUAAUGGAUUUCAUAUAGGACAAUUUGG&UCAAAUUGUUU---------UUCAUUAUUA	2	0.999999391987963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN20762_c0_g1_1108_TPlot.pdf
TRINITY_DN20762_c0_g1:1109	si_a73	TRINITY_DN20762_c0_g1	1089	1118	1109	-21.90	-14.80	0.675799086757991	22	1-12,1118-1107;13-21,1097-1089	x-x,1106-1098[BULt]	(((((((((.........((((((((((((&))))))))))))---------)))))))))	GAUAAUGGAUUUCAUAUAGGACAAUUUGGA&UUCAAAUUGUUU---------UUCAUUAUU	3	0.999999999667001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN20762_c0_g1_1109_TPlot.pdf
TRINITY_DN20762_c0_g1:1369	si_a330	TRINITY_DN20762_c0_g1	1358	1378	1369	-30.50	-20.50	0.672131147540984	17.5	9-21,1370-1358	1-8,1378-1371[UP5]	(((((((((((((........&........)))))))))))))	UUGGGGCGAGGGAAAUGUAAA&UUUUUUUAUUCCUUGUCCCGA	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN20762_c0_g1_1369_TPlot.pdf
TRINITY_DN2076_c0_g1:2286	si_s319	TRINITY_DN2076_c0_g1	2275	2295	2286	-31.30	-21.50	0.686900958466454	8.5	2-9,2294-2287;11-15,2285-2281;17-19,2279-2277	1-1,2295-2295[UP5];10-10,2286-2286[SIL];16-16,2280-2280[SIL];20-21,2276-2275[UP3]	..(((.(((((.((((((((.&.)))))))).))))).)))..	UAGUUGGUGACUGGAGGGACG&UGUCCUUCUUGUUACAAACAU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN2076_c0_g1_2286_TPlot.pdf
TRINITY_DN2076_c0_g1:2288	si_s317	TRINITY_DN2076_c0_g1	2277	2297	2288	-33.10	-25.70	0.776435045317221	6.5	1-11,2297-2287;13-17,2285-2281;19-21,2279-2277	12-12,2286-2286[SIL];18-18,2280-2280[SIL]	(((.(((((.(((((((((((&))))))))))).))))).)))	GUUGGUGACUGGAGGGACGGA&UCUGUCCUUCUUGUUACAAAC	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN2076_c0_g1_2288_TPlot.pdf
TRINITY_DN2076_c0_g1:2289	si_s316	TRINITY_DN2076_c0_g1	2278	2298	2289	-31.50	-24.60	0.780952380952381	8	1-12,2298-2287;14-18,2285-2281	13-13,2286-2286[SIL];19-21,2280-2278[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UUGGUGACUGGAGGGACGGAG&UUCUGUCCUUCUUGUUACAAA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN2076_c0_g1_2289_TPlot.pdf
TRINITY_DN2076_c0_g1:2290	si_s315	TRINITY_DN2076_c0_g1	2279	2299	2290	-31.60	-26.20	0.829113924050633	7	1-13,2299-2287;15-19,2285-2281	14-14,2286-2286[SIL];20-21,2280-2279[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UGGUGACUGGAGGGACGGAGU&AUUCUGUCCUUCUUGUUACAA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN2076_c0_g1_2290_TPlot.pdf
TRINITY_DN2076_c0_g1:2293	si_s312	TRINITY_DN2076_c0_g1	2282	2302	2293	-29.00	-23.00	0.793103448275862	9.5	4-16,2299-2287;18-21,2285-2282	1-3,2302-2300[UP5];17-17,2286-2286[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UGACUGGAGGGACGGAGUGAU&AAAAUUCUGUCCUUCUUGUUA	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2076_c0_g1_2293_TPlot.pdf
TRINITY_DN2076_c0_g1:2298	si_s307	TRINITY_DN2076_c0_g1	2287	2306	2298	-32.90	-22.00	0.668693009118541	12.5	3-5,2304-2302;9-21,2299-2287	1-2,2306-2305[UP5];6-8,2301-2300[AILq]	(((((((((((((..-(((..&..)))...)))))))))))))	GGAGGGACGGAGUGA-UGCUC&UUGCGAAAAUUCUGUCCUUCU	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN2076_c0_g1_2298_TPlot.pdf
TRINITY_DN2076_c0_g1:2388	si_s313	TRINITY_DN2076_c0_g1	2377	2401	2388	-30.80	-21.10	0.685064935064935	13.5	1-7,2401-2395;8-20,2390-2378	x-x,2394-2391[BULt];21-21,2377-2377[UP3]	.(((((((((((((....(((((((&)))))))----))))))))))))).	UUGACGAGGAGGAUGGCUGGAGUUU&AAAUUCU----GUCCUUCUUGUUAC	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN2076_c0_g1_2388_TPlot.pdf
TRINITY_DN2076_c0_g1:2389	si_s312	TRINITY_DN2076_c0_g1	2378	2402	2389	-29.00	-21.30	0.73448275862069	13.5	2-8,2401-2395;9-21,2390-2378	1-1,2402-2402[UP5];x-x,2394-2391[BULt]	(((((((((((((....(((((((.&.)))))))----)))))))))))))	UGACGAGGAGGAUGGCUGGAGUUUC&AAAAUUCU----GUCCUUCUUGUUA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2076_c0_g1_2389_TPlot.pdf
TRINITY_DN2076_c0_g1:2452	si_a187	TRINITY_DN2076_c0_g1	2440	2460	2452	-32.00	-21.30	0.665625	8.5	1-8,2460-2453;11-18,2451-2444;20-21,2441-2440	9-10,2452-2452[AILq];19-19,2443-2442[AILt]	((..((((((((.-((((((((&))))))))..))))))))-.))	AGGAGAACGGGGU-GGAUGUUA&UAAUAUCUUUCCCUGUUC-ACU	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN2076_c0_g1_2452_TPlot.pdf
TRINITY_DN2076_c0_g1:2453	si_a185	TRINITY_DN2076_c0_g1	2443	2462	2453	-31.70	-21.30	0.67192429022082	10.5	3-10,2460-2453;13-20,2451-2444	1-2,2462-2461[UP5];11-12,2452-2452[AILq];21-21,2443-2443[UP3]	.((((((((.-((((((((..&..))))))))..)))))))).	AGAACGGGGU-GGAUGUUAAA&GAUAAUAUCUUUCCCUGUUCA	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN2076_c0_g1_2453_TPlot.pdf
TRINITY_DN2076_c0_g1:2454	si_a184	TRINITY_DN2076_c0_g1	2444	2463	2454	-31.70	-20.80	0.65615141955836	10.5	4-11,2460-2453;14-21,2451-2444	1-3,2463-2461[UP5];12-13,2452-2452[AILq]	((((((((.-((((((((...&...))))))))..))))))))	GAACGGGGU-GGAUGUUAAAG&AGAUAAUAUCUUUCCCUGUUC	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN2076_c0_g1_2454_TPlot.pdf
TRINITY_DN2076_c0_g1:2472	si_a627	TRINITY_DN2076_c0_g1	2461	2482	2472	-29.50	-19.80	0.671186440677966	11.5	1-5,2482-2478;6-11,2476-2471;13-17,2469-2465	x-x,2477-2477[BULt];12-12,2470-2470[SIL];18-21,2464-2461[UP3]	....(((((.((((((.(((((&)))))-)))))).)))))....	AAGCGAUCGUCGUGAUCGCGCC&GGCGU-AUUAUGUCGAUUUUUU	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN2076_c0_g1_2472_TPlot.pdf
TRINITY_DN2076_c0_g1:2475	si_a624	TRINITY_DN2076_c0_g1	2464	2485	2475	-32.30	-25.40	0.786377708978328	8	1-8,2485-2478;9-14,2476-2471;16-20,2469-2465	x-x,2477-2477[BULt];15-15,2470-2470[SIL];21-21,2464-2464[UP3]	.(((((.((((((.((((((((&))))))))-)))))).))))).	CGAUCGUCGUGAUCGCGCCUGG&CUAGGCGU-AUUAUGUCGAUUU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN2076_c0_g1_2475_TPlot.pdf
TRINITY_DN2076_c0_g1:2476	si_a623	TRINITY_DN2076_c0_g1	2465	2486	2476	-33.10	-25.60	0.773413897280967	8	2-9,2485-2478;10-15,2476-2471;17-21,2469-2465	1-1,2486-2486[UP5];x-x,2477-2477[BULt];16-16,2470-2470[SIL]	(((((.((((((.((((((((.&.))))))))-)))))).)))))	GAUCGUCGUGAUCGCGCCUGGG&ACUAGGCGU-AUUAUGUCGAUU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN2076_c0_g1_2476_TPlot.pdf
TRINITY_DN2076_c0_g1:2478	si_a622	TRINITY_DN2076_c0_g1	2466	2487	2478	-35.10	-24.40	0.695156695156695	9	3-10,2485-2478;11-16,2476-2471;18-21,2469-2466	1-2,2487-2486[UP5];x-x,2477-2477[BULt];17-17,2470-2470[SIL]	((((.((((((.((((((((..&..))))))))-)))))).))))	AUCGUCGUGAUCGCGCCUGGGA&GACUAGGCGU-AUUAUGUCGAU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN2076_c0_g1_2478_TPlot.pdf
TRINITY_DN2076_c0_g1:3176	si_s76	TRINITY_DN2076_c0_g1	3162	3185	3176	-23.60	-16.10	0.682203389830509	12.5	3-10,3183-3176;11-21,3172-3162	1-2,3185-3184[UP5];x-x,3175-3173[BULt]	(((((((((((...((((((((..&..))))))))---)))))))))))	GAGAAGGGGGAUCUGAAAAAAGCG&AUUUUUUUUC---UUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2076_c0_g1_3176_TPlot.pdf
TRINITY_DN20779_c0_g1:1726	si_a411	TRINITY_DN20779_c0_g1	1715	1735	1726	-17.90	-12.20	0.681564245810056	4	1-13,1735-1723;16-20,1720-1716	14-15,1722-1721[SIL];21-21,1715-1715[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	UUUUAUAAAAGUAUAAACAAA&UUUGUUUAUAUUUAAAUAAAU	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN20779_c0_g1_1726_TPlot.pdf
TRINITY_DN20779_c0_g1:1727	si_a410	TRINITY_DN20779_c0_g1	1716	1736	1727	-17.80	-12.30	0.691011235955056	4	2-14,1735-1723;17-21,1720-1716	1-1,1736-1736[UP5];15-16,1722-1721[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UUUAUAAAAGUAUAAACAAAU&UUUUGUUUAUAUUUAAAUAAA	0	0.375484735321904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN20779_c0_g1_1727_TPlot.pdf
TRINITY_DN2077_c0_g1:1405	si_a405	TRINITY_DN2077_c0_g1	1394	1414	1405	-19.80	-13.40	0.676767676767677	8	2-13,1413-1402;15-18,1400-1397	1-1,1414-1414[UP5];14-14,1401-1401[SIL];19-21,1396-1394[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	UUUGAUAGGAACAAGGCAAUG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2077_c0_g1_1405_TPlot.pdf
TRINITY_DN2077_c0_g1:307	si_a707	TRINITY_DN2077_c0_g1	296	315	307	-30.40	-20.10	0.661184210526316	6	1-2,315-314;4-13,313-304;16-20,301-297	3-3,x-x[BULq];14-15,303-302[SIL];21-21,296-296[UP3]	.(((((..((((((((((-((&)).))))))))))..))))).	UCGAUUCAUUUGGAGUGU-CC&GGUACAUUCCAAAAUAAUCGU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a707_TRINITY_DN2077_c0_g1_307_TPlot.pdf
TRINITY_DN20782_c0_g1:364	si_s811	TRINITY_DN20782_c0_g1	353	373	364	-26.40	-17.40	0.659090909090909	11	1-11,373-363;13-16,361-358	12-12,362-362[SIL];17-21,357-353[UP3]	.....((((.(((((((((((&))))))))))).)))).....	AAGAAAAGGCGAGGUGGCGAG&UUCGUUACCUUUUCUUAAUAA	4	0.999999964502386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN20782_c0_g1_364_TPlot.pdf
TRINITY_DN20782_c0_g1:365	si_s810	TRINITY_DN20782_c0_g1	354	374	365	-27.90	-20.10	0.720430107526882	9.5	1-12,374-363;14-17,361-358	13-13,362-362[SIL];18-21,357-354[UP3]	....((((.((((((((((((&)))))))))))).))))....	AGAAAAGGCGAGGUGGCGAGG&CUUCGUUACCUUUUCUUAAUA	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN20782_c0_g1_365_TPlot.pdf
TRINITY_DN20782_c0_g1:367	si_s808	TRINITY_DN20782_c0_g1	356	376	367	-28.60	-20.10	0.702797202797203	10	3-14,374-363;16-19,361-358	1-2,376-375[UP5];15-15,362-362[SIL];20-21,357-356[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	AAAAGGCGAGGUGGCGAGGUG&AUCUUCGUUACCUUUUCUUAA	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN20782_c0_g1_367_TPlot.pdf
TRINITY_DN20782_c0_g1:370	si_s805	TRINITY_DN20782_c0_g1	359	379	370	-28.60	-18.90	0.660839160839161	14	6-17,374-363;19-21,361-359	1-5,379-375[UP5];18-18,362-362[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	AGGCGAGGUGGCGAGGUGCCC&UUUAUCUUCGUUACCUUUUCU	4	0.999999999989576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN20782_c0_g1_370_TPlot.pdf
TRINITY_DN20782_c0_g1:371	si_a733	TRINITY_DN20782_c0_g1	359	379	371	-44.60	-30.50	0.683856502242152	9	1-9,379-371;12-13,369-368;14-16,366-364;18-20,362-360	10-11,370-370[AILq];x-x,367-367[BULt];17-17,363-363[SIL];21-21,359-359[UP3]	.(((.(((.((.-(((((((((&)))))))))..))-))).))).	AGGCGAGGUGGC-GAGGUGCCC&GGGCAUCUUUACC-CCUGGCCA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a733_TRINITY_DN20782_c0_g1_371_TPlot.pdf
TRINITY_DN20782_c0_g1:372	si_s803	TRINITY_DN20782_c0_g1	361	381	372	-26.00	-17.10	0.657692307692308	17.5	8-19,374-363	1-7,381-375[UP5];20-21,362-361[UP3]	..((((((((((((.......&.......))))))))))))..	GCGAGGUGGCGAGGUGCCCAA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN20782_c0_g1_372_TPlot.pdf
TRINITY_DN20786_c0_g1:3718	si_a216	TRINITY_DN20786_c0_g1	3707	3727	3718	-28.30	-19.28	0.681272084805654	10.5	2-8,3726-3720;12-21,3716-3707	1-1,3727-3727[UP5];9-11,3719-3717[SIL]	((((((((((...(((((((.&.)))))))...))))))))))	GAAACGUGAGGAAGGUUGGUG&GACUAAUUAAACUCAUGUUUC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a216_TRINITY_DN20786_c0_g1_3718_TPlot.pdf
TRINITY_DN20786_c0_g1:3719	si_a215	TRINITY_DN20786_c0_g1	3708	3728	3719	-27.80	-18.18	0.653956834532374	11.5	1-1,3728-3728;3-9,3726-3720;13-21,3716-3708	2-2,3727-3727[SIL];10-12,3719-3717[SIL]	(((((((((...(((((((.(&).)))))))...)))))))))	AAACGUGAGGAAGGUUGGUGG&CGACUAAUUAAACUCAUGUUU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a215_TRINITY_DN20786_c0_g1_3719_TPlot.pdf
TRINITY_DN20786_c0_g1:3881	si_a364	TRINITY_DN20786_c0_g1	3870	3890	3881	-27.70	-18.30	0.660649819494585	6.5	2-10,3889-3881;12-14,3879-3877;17-21,3874-3870	1-1,3890-3890[UP5];11-11,3880-3880[SIL];15-16,3876-3875[SIL]	(((((..(((.(((((((((.&.))))))))).)))..)))))	UAUUUGGGAUGCGAUCAAGAA&AUUUUGAUCGGAUCAAAAAUG	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN20786_c0_g1_3881_TPlot.pdf
TRINITY_DN20786_c0_g1:615	si_s76	TRINITY_DN20786_c0_g1	605	624	615	-23.60	-15.40	0.652542372881356	11.5	5-12,620-613;14-20,612-606	1-4,624-621[UP5];13-13,x-x[BULq];21-21,605-605[UP3]	.(((((((-((((((((....&....)))))))).))))))).	UAGAGAGG-AGGAGAAAUUGG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN20786_c0_g1_615_TPlot.pdf
TRINITY_DN20788_c0_g2:108	si_a410	TRINITY_DN20788_c0_g2	97	117	108	-17.80	-13.50	0.758426966292135	7	3-19,115-99	1-2,117-116[UP5];20-21,98-97[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CCUAUUUAAAUAUAAAUAGCU&UUUUGUUUAUAUUUAAAUAAA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN20788_c0_g2_108_TPlot.pdf
TRINITY_DN20788_c0_g2:110	si_a408	TRINITY_DN20788_c0_g2	99	119	110	-20.10	-13.20	0.656716417910448	9	5-21,115-99	1-4,119-116[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAUUUAAAUAUAAAUAGCUCU&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN20788_c0_g2_110_TPlot.pdf
TRINITY_DN2078_c0_g2:679	si_s79	TRINITY_DN2078_c0_g2	668	689	679	-26.20	-18.00	0.687022900763359	6	1-6,689-684;7-17,682-672;19-20,670-669	x-x,683-683[BULt];18-18,671-671[SIL];21-21,668-668[UP3]	.((.(((((((((((.((((((&))))))-))))))))))).)).	CAGUAGAGAGGAAAGCAGAAAG&UUUUUU-CUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2078_c0_g2_679_TPlot.pdf
TRINITY_DN2078_c0_g2:680	si_s78	TRINITY_DN2078_c0_g2	669	690	680	-26.20	-18.50	0.706106870229008	6	1-7,690-684;8-18,682-672;20-21,670-669	x-x,683-683[BULt];19-19,671-671[SIL]	((.(((((((((((.(((((((&)))))))-))))))))))).))	AGUAGAGAGGAAAGCAGAAAGG&UUUUUUU-CUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2078_c0_g2_680_TPlot.pdf
TRINITY_DN2078_c0_g2:681	si_s77	TRINITY_DN2078_c0_g2	670	691	681	-25.50	-17.90	0.701960784313725	8.5	2-8,690-684;9-19,682-672	1-1,691-691[UP5];x-x,683-683[BULt];20-21,671-670[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	GUAGAGAGGAAAGCAGAAAGGG&UUUUUUUU-CUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2078_c0_g2_681_TPlot.pdf
TRINITY_DN2078_c0_g2:682	si_s76	TRINITY_DN2078_c0_g2	671	693	682	-23.60	-18.10	0.766949152542373	9.5	1-9,693-685;10-20,682-672	x-x,684-683[BULt];21-21,671-671[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	UAGAGAGGAAAGCAGAAAGGGAU&AUUUUUUUU--CUUUCCUUUCUU	3	0.999999999997931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2078_c0_g2_682_TPlot.pdf
TRINITY_DN2078_c0_g2:685	si_s75	TRINITY_DN2078_c0_g2	672	694	685	-24.00	-18.90	0.7875	9	1-10,694-685;11-21,682-672	x-x,684-683[BULt]	(((((((((((..((((((((((&))))))))))--)))))))))))	AGAGAGGAAAGCAGAAAGGGAUG&UAUUUUUUUU--CUUUCCUUUCU	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2078_c0_g2_685_TPlot.pdf
TRINITY_DN2078_c0_g2:686	si_s74	TRINITY_DN2078_c0_g2	673	695	686	-25.00	-17.90	0.716	10.5	2-11,694-685;12-21,682-673	1-1,695-695[UP5];x-x,684-683[BULt]	((((((((((..((((((((((.&.))))))))))--))))))))))	GAGAGGAAAGCAGAAAGGGAUGC&CUAUUUUUUUU--CUUUCCUUUC	2	0.999999820446701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2078_c0_g2_686_TPlot.pdf
TRINITY_DN2078_c0_g4:177	si_a760	TRINITY_DN2078_c0_g4	165	186	177	-31.10	-20.92	0.672668810289389	11	1-11,186-176;15-19,171-167	12-14,175-172[AILt];20-21,166-165[UP3]	..(((((....(((((((((((&)))))))))))-...)))))..	AACGGUCCCGCAGCCCAGAGGA&UCCUUUGGGUU-UUUGAUUGAU	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2078_c0_g4_177_TPlot.pdf
TRINITY_DN2079_c0_g1:1346	si_s51	TRINITY_DN2079_c0_g1	1332	1355	1346	-30.70	-25.80	0.840390879478827	8	2-11,1354-1345;12-21,1341-1332	1-1,1355-1355[UP5];x-x,1344-1342[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	GUUGCUAACUUAUUGAAAUCCGAA&AUUGGAUUUCA---AGUUAGCAAC	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN2079_c0_g1_1346_TPlot.pdf
TRINITY_DN2079_c0_g1:2714	si_a318	TRINITY_DN2079_c0_g1	2703	2723	2714	-22.50	-14.90	0.662222222222222	5	1-11,2723-2713;13-14,2711-2710;17-21,2707-2703	12-12,2712-2712[SIL];15-16,2709-2708[SIL]	(((((..((.(((((((((((&))))))))))).))..)))))	AUGAAUUAGACAUGGAUAAAU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2079_c0_g1_2714_TPlot.pdf
TRINITY_DN207_c0_g1:590	si_s314	TRINITY_DN207_c0_g1	579	599	590	-31.50	-21.60	0.685714285714286	11.5	3-10,597-590;13-20,587-580	1-2,599-598[UP5];11-12,589-588[SIL];21-21,579-579[UP3]	.((((((((..((((((((..&..))))))))..)))))))).	GGUAACGAGUUGGAUAGGGGG&AAUUCUGUCCUUCUUGUUACA	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN207_c0_g1_590_TPlot.pdf
TRINITY_DN20801_c0_g1:213	si_a462	TRINITY_DN20801_c0_g1	201	222	213	-21.20	-14.70	0.693396226415094	7.5	1-14,222-209;15-16,207-206	x-x,208-208[BULt];17-21,205-201[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	AAAGGGCAAUAUUGUAUAUAAC&GUUAUAUAUAAUAU-GUAAUUA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN20801_c0_g1_213_TPlot.pdf
TRINITY_DN20801_c0_g1:214	si_a461	TRINITY_DN20801_c0_g1	202	223	214	-21.50	-15.50	0.720930232558139	6.5	1-15,223-209;16-17,207-206	x-x,208-208[BULt];18-21,205-202[UP3]	....((.(((((((((((((((&)))))))))))))))-))....	AAGGGCAAUAUUGUAUAUAACA&UGUUAUAUAUAAUAU-GUAAUU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN20801_c0_g1_214_TPlot.pdf
TRINITY_DN20801_c0_g1:215	si_a460	TRINITY_DN20801_c0_g1	203	224	215	-21.60	-15.60	0.722222222222222	6.5	2-16,223-209;17-18,207-206	1-1,224-224[UP5];x-x,208-208[BULt];19-21,205-203[UP3]	...((.(((((((((((((((.&.)))))))))))))))-))...	AGGGCAAUAUUGUAUAUAACAC&UUGUUAUAUAUAAUAU-GUAAU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN20801_c0_g1_215_TPlot.pdf
TRINITY_DN20801_c0_g1:216	si_a459	TRINITY_DN20801_c0_g1	204	225	216	-23.20	-15.60	0.672413793103448	7.5	3-17,223-209;18-19,207-206	1-2,225-224[UP5];x-x,208-208[BULt];20-21,205-204[UP3]	..((.(((((((((((((((..&..)))))))))))))))-))..	GGGCAAUAUUGUAUAUAACACC&GUUGUUAUAUAUAAUAU-GUAA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN20801_c0_g1_216_TPlot.pdf
TRINITY_DN20801_c0_g1:220	si_a455	TRINITY_DN20801_c0_g1	209	229	220	-21.10	-14.50	0.687203791469194	8.5	4-5,226-225;7-21,223-209	1-3,229-227[UP5];6-6,224-224[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	AUAUUGUAUAUAACACCGUUA&AAUUGUUGUUAUAUAUAAUAU	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN20801_c0_g1_220_TPlot.pdf
TRINITY_DN2080_c0_g1:1583	si_a58	TRINITY_DN2080_c0_g1	1572	1593	1583	-34.60	-24.00	0.69364161849711	10.5	2-9,1592-1585;10-18,1583-1575	1-1,1593-1593[UP5];x-x,1584-1584[BULt];19-21,1574-1572[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AUGGGGGGAGGUGGAGUCGGCG&AGUCGACUC-GCUUCUUUCAAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN2080_c0_g1_1583_TPlot.pdf
TRINITY_DN2080_c0_g1:976	si_a139	TRINITY_DN2080_c0_g1	964	991	976	-25.90	-17.30	0.667953667953668	16	1-8,991-984;9-12,977-974;13-21,972-964	x-x,983-978[BULt];x-x,973-973[BULt]	(((((((((.((((......((((((((&))))))))------))))-)))))))))	GAGCAACAAUCGAUUUUUCAUGAUUACU&AGUAAUUA------AUCG-UUGUUGUUU	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN2080_c0_g1_976_TPlot.pdf
TRINITY_DN20815_c0_g1:1066	si_a556	TRINITY_DN20815_c0_g1	1055	1076	1066	-33.40	-21.92	0.656287425149701	15.5	4-5,1073-1072;9-19,1067-1057	1-3,1076-1074[UP5];6-8,1071-1068[AILt];20-21,1056-1055[UP3]	..(((((((((((....((...&...))-...)))))))))))..	ACCGCGGGGAGAUUUGUGAUGG&AUUUC-UUUAUCUCCCCGUGAA	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN20815_c0_g1_1066_TPlot.pdf
TRINITY_DN20815_c0_g1:334	si_a64	TRINITY_DN20815_c0_g1	323	343	334	-29.40	-20.00	0.680272108843537	9.5	2-13,342-331;16-20,328-324	1-1,343-343[UP5];14-15,330-329[SIL];21-21,323-323[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	CGGCGAAGUGGAGGAGGCGGA&CUCGCUUCUUUCAAAUUGUUU	3	0.999775402880348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN20815_c0_g1_334_TPlot.pdf
TRINITY_DN20815_c0_g1:335	si_a63	TRINITY_DN20815_c0_g1	324	344	335	-30.20	-20.00	0.662251655629139	10.5	3-14,342-331;17-21,328-324	1-2,344-343[UP5];15-16,330-329[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	GGCGAAGUGGAGGAGGCGGAA&ACUCGCUUCUUUCAAAUUGUU	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN20815_c0_g1_335_TPlot.pdf
TRINITY_DN20815_c0_g1:337	si_s89	TRINITY_DN20815_c0_g1	326	346	337	-35.30	-29.20	0.827195467422096	6	1-6,346-341;8-21,339-326	7-7,340-340[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	CGAAGUGGAGGAGGCGGAAGG&CCUUUCUUCUUCUUCGCUUCG	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN20815_c0_g1_337_TPlot.pdf
TRINITY_DN20815_c0_g1:986	si_a636	TRINITY_DN20815_c0_g1	975	995	986	-26.30	-17.90	0.680608365019011	13	2-4,994-992;6-17,990-979	1-1,995-995[UP5];5-5,991-991[SIL];18-21,978-975[UP3]	....((((((((((((.(((.&.))).))))))))))))....	UCGAGCUCGGAGGAGUGGGCG&UGUCGAUUUUUUUGAGUAAUA	4	0.999998657188711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN20815_c0_g1_986_TPlot.pdf
TRINITY_DN20815_c0_g1:989	si_a633	TRINITY_DN20815_c0_g1	978	998	989	-26.40	-19.20	0.727272727272727	12	3-7,996-992;9-20,990-979	1-2,998-997[UP5];8-8,991-991[SIL];21-21,978-978[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AGCUCGGAGGAGUGGGCGUCA&UUAUGUCGAUUUUUUUGAGUA	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN20815_c0_g1_989_TPlot.pdf
TRINITY_DN20815_c0_g1:990	si_a632	TRINITY_DN20815_c0_g1	979	999	990	-26.10	-18.70	0.716475095785441	12.5	4-8,996-992;10-21,990-979	1-3,999-997[UP5];9-9,991-991[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GCUCGGAGGAGUGGGCGUCAA&AUUAUGUCGAUUUUUUUGAGU	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN20815_c0_g1_990_TPlot.pdf
TRINITY_DN2081_c0_g1:548	si_s566	TRINITY_DN2081_c0_g1	537	557	548	-30.70	-20.30	0.661237785016287	14	7-19,551-539	1-6,557-552[UP5];20-21,538-537[UP3]	..(((((((((((((......&......)))))))))))))..	UGUGUUCUUUGUCCCAACAGC&AUUUUCGGGACAAGGAAUAAA	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s566_TRINITY_DN2081_c0_g1_548_TPlot.pdf
TRINITY_DN2081_c0_g1:562	si_a398	TRINITY_DN2081_c0_g1	550	571	562	-22.40	-17.90	0.799107142857143	3.5	1-14,571-558;15-19,556-552	x-x,557-557[BULt];20-21,551-550[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	CCAACAGCAACAAUUCUAUAUU&AAUAUAGAAUUGUU-UUGUUUA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2081_c0_g1_562_TPlot.pdf
TRINITY_DN2081_c0_g1:567	si_a393	TRINITY_DN2081_c0_g1	556	576	567	-22.70	-14.90	0.656387665198238	11	6-19,571-558	1-5,576-572[UP5];20-21,557-556[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCAACAAUUCUAUAUUAGCCU&UUAAGAAUAUAGAAUUGUUUU	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN2081_c0_g1_567_TPlot.pdf
TRINITY_DN2081_c0_g1:775	si_s818	TRINITY_DN2081_c0_g1	764	784	775	-23.70	-15.50	0.654008438818565	10	1-12,784-773;15-16,770-769	13-14,772-771[SIL];17-21,768-764[UP3]	.....((..((((((((((((&))))))))))))..)).....	AGUUACAGAAUUGAGGAGAGG&CCUUUUCUUAAUAAUGAAAAA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN2081_c0_g1_775_TPlot.pdf
TRINITY_DN20833_c0_g1:1413	si_s587	TRINITY_DN20833_c0_g1	1402	1422	1413	-28.70	-20.30	0.707317073170732	8	3-12,1420-1411;15-19,1408-1404	1-2,1422-1421[UP5];13-14,1410-1409[SIL];20-21,1403-1402[UP3]	..(((((..((((((((((..&..))))))))))..)))))..	CCUGGAUCAGUCCAUGAUUCA&AAAAUCAUGGAUAAAUCCAAG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s587_TRINITY_DN20833_c0_g1_1413_TPlot.pdf
TRINITY_DN20833_c0_g2:74	si_a399	TRINITY_DN20833_c0_g2	63	83	74	-22.60	-14.90	0.65929203539823	9	2-15,82-69	1-1,83-83[UP5];16-21,68-63[UP3]	......((((((((((((((.&.))))))))))))))......	ACCUAAAAAGCAAUUCUGUAA&AUAUAGAAUUGUUUUGUUUAU	1	0.232131182148057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN20833_c0_g2_74_TPlot.pdf
TRINITY_DN20836_c0_g1:1858	si_s423	TRINITY_DN20836_c0_g1	1847	1867	1858	-21.50	-14.40	0.669767441860465	10	3-16,1865-1852	1-2,1867-1866[UP5];17-21,1851-1847[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUCACAUUGUUAUAUGGGAGU&UAUUCUAUAUAACAAUAAUUA	2	0.943587266821235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN20836_c0_g1_1858_TPlot.pdf
TRINITY_DN20836_c0_g1:1859	si_s422	TRINITY_DN20836_c0_g1	1848	1868	1859	-21.30	-14.40	0.676056338028169	11	4-17,1865-1852	1-3,1868-1866[UP5];18-21,1851-1848[UP3]	....((((((((((((((...&...))))))))))))))....	UCACAUUGUUAUAUGGGAGUU&AUAUUCUAUAUAACAAUAAUU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN20836_c0_g1_1859_TPlot.pdf
TRINITY_DN20839_c0_g1:1330	si_s79	TRINITY_DN20839_c0_g1	1320	1339	1330	-26.20	-17.90	0.683206106870229	7.5	3-11,1337-1329;13-21,1328-1320	1-2,1339-1338[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	AAGAAGGAA-GAAAGAGAGCU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN20839_c0_g1_1330_TPlot.pdf
TRINITY_DN20839_c0_g1:1334	si_s71	TRINITY_DN20839_c0_g1	1324	1343	1334	-25.70	-17.00	0.66147859922179	8	1-4,1343-1340;7-17,1337-1327;19-21,1326-1324	5-6,1339-1338[SIL];18-18,x-x[BULq]	(((-(((((((((((..((((&))))..))))))))))).)))	AGG-AAGAAAGAGAGCUGAAG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN20839_c0_g1_1334_TPlot.pdf
TRINITY_DN20839_c0_g1:1335	si_s70	TRINITY_DN20839_c0_g1	1324	1344	1335	-25.80	-16.80	0.651162790697674	9.5	2-5,1343-1340;8-20,1337-1325	1-1,1344-1344[UP5];6-7,1339-1338[SIL];21-21,1324-1324[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AGGAAGAAAGAGAGCUGAAGG&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN20839_c0_g1_1335_TPlot.pdf
TRINITY_DN20839_c0_g1:1418	si_s72	TRINITY_DN20839_c0_g1	1407	1427	1418	-24.10	-17.30	0.717842323651452	5.5	1-13,1427-1415;15-19,1413-1409	14-14,1414-1414[SIL];20-21,1408-1407[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AUGGAAAAGAAAGAAAUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN20839_c0_g1_1418_TPlot.pdf
TRINITY_DN20839_c0_g1:1419	si_s71	TRINITY_DN20839_c0_g1	1408	1428	1419	-25.70	-17.50	0.680933852140078	5.5	2-14,1427-1415;16-20,1413-1409	1-1,1428-1428[UP5];15-15,1414-1414[SIL];21-21,1408-1408[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UGGAAAAGAAAGAAAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN20839_c0_g1_1419_TPlot.pdf
TRINITY_DN20839_c0_g1:1420	si_s70	TRINITY_DN20839_c0_g1	1409	1429	1420	-25.80	-17.10	0.662790697674419	6.5	3-15,1427-1415;17-21,1413-1409	1-2,1429-1428[UP5];16-16,1414-1414[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GGAAAAGAAAGAAAUGGAAAU&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN20839_c0_g1_1420_TPlot.pdf
TRINITY_DN2083_c0_g1:475	si_s599	TRINITY_DN2083_c0_g1	464	484	475	-27.80	-18.10	0.651079136690648	6.5	2-11,483-474;13-15,472-470;17-20,468-465	1-1,484-484[UP5];12-12,473-473[SIL];16-16,469-469[SIL];21-21,464-464[UP3]	.((((.(((.((((((((((.&.)))))))))).))).)))).	UAAAAUGGUGCGCUUGGGUUG&AAAUCCAAGCGAAUCUUUUUU	3	0.999775402880348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN2083_c0_g1_475_TPlot.pdf
TRINITY_DN20841_c0_g1:50	si_a68	TRINITY_DN20841_c0_g1	38	58	50	-25.40	-16.70	0.65748031496063	8.5	1-6,58-53;8-12,52-48;14-21,45-38	7-7,x-x[BULq];13-13,47-46[AILt]	((((((((..(((((-((((((&)))))).)))))-.))))))))	UGAAGAACUUGUUUG-GGGAAG&CUUCUUUCAAAU-UGUUUUUCA	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN20841_c0_g1_50_TPlot.pdf
TRINITY_DN20845_c0_g1:159	si_a316	TRINITY_DN20845_c0_g1	146	168	159	-26.30	-18.00	0.684410646387833	10.5	1-6,168-163;8-11,161-158;12-20,155-147	7-7,162-162[SIL];x-x,157-156[BULt];21-21,146-146[UP3]	.(((((((((..((((.((((((&)))))).))))--))))))))).	CGAGAAGUCGGUUGGAGGAAUCC&GGAUUUAUCCA--UGAUUUUUUU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN20845_c0_g1_159_TPlot.pdf
TRINITY_DN2084_c0_g1:821	si_a762	TRINITY_DN2084_c0_g1	808	831	821	-29.70	-19.60	0.65993265993266	10	2-9,830-823;10-15,821-816;16-21,813-808	1-1,831-831[UP5];x-x,822-822[BULt];x-x,815-814[BULt]	((((((..((((((.((((((((.&.))))))))-))))))--))))))	GAAUCACCAUCGAGCAGCCCGAGC&CUUUGGGUU-UUUGAU--UGAUUC	4	0.999999993331237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2084_c0_g1_821_TPlot.pdf
TRINITY_DN2085_c0_g1:10664	si_s806	TRINITY_DN2085_c0_g1	10654	10673	10664	-28.60	-19.30	0.674825174825175	8.5	3-11,10671-10663;13-20,10662-10655	1-2,10673-10672[UP5];12-12,x-x[BULq];21-21,10654-10654[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	CGGAAAAGG-AAUGGAGAUCU&UUAUCUUCGUUACCUUUUCUU	4	0.999999998327372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2085_c0_g1_10664_TPlot.pdf
TRINITY_DN2085_c0_g1:14280	si_s80	TRINITY_DN2085_c0_g1	14267	14289	14280	-28.20	-18.80	0.666666666666667	8.5	1-15,14289-14275;17-20,14271-14268	16-16,14274-14272[AILt];21-21,14267-14267[UP3]	.((((...(((((((((((((((&)))))))))))))))--.)))).	UGAGACAUGGAAGGAGAGAGAGG&UUUUUCUUUCCUUUC--UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2085_c0_g1_14280_TPlot.pdf
TRINITY_DN2085_c0_g1:14283	si_s77	TRINITY_DN2085_c0_g1	14272	14292	14283	-25.50	-18.20	0.713725490196078	12.5	4-18,14289-14275	1-3,14292-14290[UP5];19-21,14274-14272[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAUGGAAGGAGAGAGAGGCUA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2085_c0_g1_14283_TPlot.pdf
TRINITY_DN2085_c0_g1:5894	si_s69	TRINITY_DN2085_c0_g1	5883	5904	5894	-23.40	-17.30	0.739316239316239	10	3-7,5902-5898;9-21,5895-5883	1-2,5904-5903[UP5];8-8,5897-5896[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGAAGAGAAGAAGGAAGAAGCG&AACUUCU-AUUUUUUUUCUUUC	4	0.999999999473538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2085_c0_g1_5894_TPlot.pdf
TRINITY_DN2085_c0_g1:8149	si_s691	TRINITY_DN2085_c0_g1	8138	8160	8149	-26.20	-18.90	0.721374045801527	11	1-7,8160-8154;9-20,8150-8139	8-8,8153-8151[AILt];21-21,8138-8138[UP3]	.((((((((((((...(((((((&)))))))--.)))))))))))).	UUGAAUUGACUGAAAAUGAGCUC&GAGUUUA--AUUAGUCGAUUUAU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN2085_c0_g1_8149_TPlot.pdf
TRINITY_DN2085_c0_g1:8151	si_s689	TRINITY_DN2085_c0_g1	8140	8162	8151	-26.50	-17.70	0.667924528301887	13	3-9,8160-8154;11-21,8150-8140	1-2,8162-8161[UP5];10-10,8153-8151[AILt]	(((((((((((...(((((((..&..)))))))--.)))))))))))	GAAUUGACUGAAAAUGAGCUCGA&AUGAGUUUA--AUUAGUCGAUUU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN2085_c0_g1_8151_TPlot.pdf
TRINITY_DN2085_c0_g1:9068	si_s91	TRINITY_DN2085_c0_g1	9056	9077	9068	-34.70	-22.90	0.659942363112392	11	4-10,9074-9068;11-20,9066-9057	1-3,9077-9075[UP5];x-x,9067-9067[BULt];21-21,9056-9056[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	GUCGAGGCGGAUGGAGAAGCUU&UUUCUUCUUC-UUCGCUUCGGA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2085_c0_g1_9068_TPlot.pdf
TRINITY_DN2085_c0_g1:9140	si_a660	TRINITY_DN2085_c0_g1	9130	9149	9140	-36.60	-24.50	0.669398907103825	8	3-14,9147-9136;16-20,9135-9131	1-2,9149-9148[UP5];15-15,x-x[BULq];21-21,9130-9130[UP3]	.(((((-((((((((((((..&..)))))))))))).))))).	CGAGUC-GUGGGCGUUUCCGU&CGGGAAAUGCCUAUUGAUUCC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN2085_c0_g1_9140_TPlot.pdf
TRINITY_DN2085_c0_g1:9141	si_a659	TRINITY_DN2085_c0_g1	9131	9150	9141	-35.20	-24.50	0.696022727272727	8.5	4-15,9147-9136;17-21,9135-9131	1-3,9150-9148[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	GAGUC-GUGGGCGUUUCCGUC&UCGGGAAAUGCCUAUUGAUUC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN2085_c0_g1_9141_TPlot.pdf
TRINITY_DN2085_c0_g1:9142	si_a266	TRINITY_DN2085_c0_g1	9131	9150	9142	-38.30	-26.10	0.681462140992167	7.5	1-2,9150-9149;4-5,9147-9146;7-18,9145-9134	3-3,9148-9148[SIL];6-6,x-x[BULq];19-21,9133-9131[UP3]	...((((((((((((-((.((&)).)).))))))))))))...	GAGUCGUGGGCGUUU-CCGUC&GAGGGCAAACGCCUACGAAAA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN2085_c0_g1_9142_TPlot.pdf
TRINITY_DN2085_c0_g1:9143	si_a265	TRINITY_DN2085_c0_g1	9132	9151	9143	-39.80	-26.50	0.665829145728643	7.5	2-3,9150-9149;5-6,9147-9146;8-19,9145-9134	1-1,9151-9151[UP5];4-4,9148-9148[SIL];7-7,x-x[BULq];20-21,9133-9132[UP3]	..((((((((((((-((.((.&.)).)).))))))))))))..	AGUCGUGGGCGUUU-CCGUCU&CGAGGGCAAACGCCUACGAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a265_TRINITY_DN2085_c0_g1_9143_TPlot.pdf
TRINITY_DN2085_c0_g1:9265	si_s235	TRINITY_DN2085_c0_g1	9254	9274	9265	-29.60	-19.70	0.66554054054054	11	5-14,9270-9261;16-19,9259-9256	1-4,9274-9271[UP5];15-15,9260-9260[SIL];20-21,9255-9254[UP3]	..((((.((((((((((....&....)))))))))).))))..	CUUGCCAAUUGGUUCCUCAAG&AAUAAGGAAUCAAUAGGCAUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s235_TRINITY_DN2085_c0_g1_9265_TPlot.pdf
TRINITY_DN20861_c0_g1:234	si_s281	TRINITY_DN20861_c0_g1	223	243	234	-35.10	-23.08	0.657549857549858	9.5	1-8,243-236;12-19,232-225	9-11,235-233[SIL];20-21,224-223[UP3]	..((((((((...((((((((&))))))))...))))))))..	GGCGACUGGGGAAGUUAUGUC&GACAUAAUACGCCUAGUCGAU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s281_TRINITY_DN20861_c0_g1_234_TPlot.pdf
TRINITY_DN20861_c0_g1:753	si_s811	TRINITY_DN20861_c0_g1	742	763	753	-26.40	-17.20	0.651515151515151	10	1-7,763-757;8-16,755-747	x-x,756-756[BULt];17-21,746-742[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	AUCAGAAGAAGAGGAUGAUGAA&UUCGUUA-CCUUUUCUUAAUAA	4	0.999999998183402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN20861_c0_g1_753_TPlot.pdf
TRINITY_DN20861_c0_g1:758	si_s807	TRINITY_DN20861_c0_g1	746	767	758	-28.90	-23.90	0.826989619377163	5.5	1-11,767-757;12-20,755-747	x-x,756-756[BULt];21-21,746-746[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	GAAGAAGAGGAUGAUGAAGAUA&UAUCUUCGUUA-CCUUUUCUUA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN20861_c0_g1_758_TPlot.pdf
TRINITY_DN20861_c0_g1:759	si_s806	TRINITY_DN20861_c0_g1	747	768	759	-28.60	-23.70	0.828671328671329	5.5	2-12,767-757;13-21,755-747	1-1,768-768[UP5];x-x,756-756[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	AAGAAGAGGAUGAUGAAGAUAU&UUAUCUUCGUUA-CCUUUUCUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN20861_c0_g1_759_TPlot.pdf
TRINITY_DN20861_c0_g1:760	si_s805	TRINITY_DN20861_c0_g1	748	769	760	-28.60	-22.80	0.797202797202797	6.5	3-13,767-757;14-21,755-748	1-2,769-768[UP5];x-x,756-756[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AGAAGAGGAUGAUGAAGAUAUG&UUUAUCUUCGUUA-CCUUUUCU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN20861_c0_g1_760_TPlot.pdf
TRINITY_DN20861_c0_g1:787	si_s72	TRINITY_DN20861_c0_g1	771	796	787	-24.10	-16.50	0.684647302904564	12.5	2-15,795-782;16-19,776-773	1-1,796-796[UP5];x-x,781-777[BULt];20-21,772-771[UP3]	..((((.....((((((((((((((.&.))))))))))))))-----))))..	ACGGAGAAGUUAGAGAAGAGAUGGAC&UUCUAUUUUUUUUCU-----UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN20861_c0_g1_787_TPlot.pdf
TRINITY_DN20861_c0_g1:801	si_s78	TRINITY_DN20861_c0_g1	784	810	801	-26.20	-17.40	0.66412213740458	15.5	1-10,810-801;11-13,795-793;14-21,791-784	x-x,800-796[BULt];x-x,792-792[BULt]	((((((((.(((.....((((((((((&))))))))))-----)))-))))))))	AGAAGAGAUGGACGAUGAAGAGGGAGA&UUUUUUUCUU-----UCC-UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN20861_c0_g1_801_TPlot.pdf
TRINITY_DN20867_c0_g1:293	si_s58	TRINITY_DN20867_c0_g1	283	302	293	-29.30	-19.50	0.665529010238908	6.5	2-12,301-291;14-18,290-286	1-1,302-302[UP5];13-13,x-x[BULq];19-21,285-283[UP3]	...(((((-(((((((((((.&.))))))))))).)))))...	AAAAGAGG-UGCUAAUUUGAU&UUCAAGUUAGCAACUUCUAUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN20867_c0_g1_293_TPlot.pdf
TRINITY_DN20867_c0_g1:295	si_s56	TRINITY_DN20867_c0_g1	285	304	295	-29.20	-19.50	0.667808219178082	8.5	4-14,301-291;16-20,290-286	1-3,304-302[UP5];15-15,x-x[BULq];21-21,285-285[UP3]	.(((((-(((((((((((...&...))))))))))).))))).	AAGAGG-UGCUAAUUUGAUAC&AUUUCAAGUUAGCAACUUCUA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN20867_c0_g1_295_TPlot.pdf
TRINITY_DN2086_c0_g1:1692	si_a149	TRINITY_DN2086_c0_g1	1681	1701	1692	-29.40	-20.76	0.706122448979592	8.5	1-10,1701-1692;15-21,1687-1681	11-14,1691-1688[SIL]	(((((((....((((((((((&))))))))))....)))))))	AUUGGCCAAACAGCAACAGCG&CGUUGUUGUUUUAAGGUCAAU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN2086_c0_g1_1692_TPlot.pdf
TRINITY_DN2086_c0_g1:1741	si_s77	TRINITY_DN2086_c0_g1	1730	1750	1741	-25.50	-18.70	0.733333333333333	7	1-10,1750-1741;12-20,1739-1731	11-11,1740-1740[SIL];21-21,1730-1730[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AGGGAGAGGGCAGAAAAGAAG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2086_c0_g1_1741_TPlot.pdf
TRINITY_DN2086_c0_g1:2344	si_a308	TRINITY_DN2086_c0_g1	2332	2354	2344	-32.70	-21.30	0.651376146788991	8.5	3-4,2352-2351;6-7,2349-2348;8-14,2346-2340;15-21,2338-2332	1-2,2354-2353[UP5];5-5,2350-2350[SIL];x-x,2347-2347[BULt];x-x,2339-2339[BULt]	(((((((.(((((((.((.((..&..)).))-)))))))-)))))))	CAUGGAUAAGAUCCACAGGGAGA&AUUCGCU-UGGAUUU-AUCCAUG	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN2086_c0_g1_2344_TPlot.pdf
TRINITY_DN2086_c0_g1:2804	si_s535	TRINITY_DN2086_c0_g1	2793	2814	2804	-28.60	-20.20	0.706293706293706	9	2-7,2813-2808;8-17,2806-2797	1-1,2814-2814[UP5];x-x,2807-2807[BULt];18-21,2796-2793[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	AGAAGAUCGGGUCACGAAAUGU&UCAUUUU-UGAUCCGAUCAAAA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN2086_c0_g1_2804_TPlot.pdf
TRINITY_DN2086_c0_g1:2809	si_s531	TRINITY_DN2086_c0_g1	2797	2818	2809	-30.00	-19.70	0.656666666666667	12.5	6-11,2813-2808;12-21,2806-2797	1-5,2818-2814[UP5];x-x,2807-2807[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GAUCGGGUCACGAAAUGUAACG&GAAAUCAUUUU-UGAUCCGAUC	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN2086_c0_g1_2809_TPlot.pdf
TRINITY_DN20873_c0_g1:378	si_s84	TRINITY_DN20873_c0_g1	366	387	378	-32.30	-21.80	0.674922600619195	9.5	1-10,387-378;11-19,376-368	x-x,377-377[BULt];20-21,367-366[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	GUGAGGAGAAGUAGGGGGAGGG&UCUUUCCUUU-CUUCUUCUUCG	2	0.999999999929391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN20873_c0_g1_378_TPlot.pdf
TRINITY_DN20873_c0_g1:421	si_s432	TRINITY_DN20873_c0_g1	411	430	421	-21.30	-14.60	0.685446009389671	8.5	3-11,428-420;13-20,419-412	1-2,430-429[UP5];12-12,x-x[BULq];21-21,411-411[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	GAUAAUGUG-GAUUGUUGUGU&UAACAAUAAUUACAUAUUAUA	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN20873_c0_g1_421_TPlot.pdf
TRINITY_DN2088_c0_g1:1350	si_s423	TRINITY_DN2088_c0_g1	1339	1359	1350	-21.50	-14.10	0.655813953488372	9.5	1-13,1359-1347	14-21,1346-1339[UP3]	........(((((((((((((&)))))))))))))........	GGUGUCCGGUUAUAUAGAGUG&UAUUCUAUAUAACAAUAAUUA	2	0.97609923111979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN2088_c0_g1_1350_TPlot.pdf
TRINITY_DN2088_c0_g1:1351	si_s422	TRINITY_DN2088_c0_g1	1340	1360	1351	-21.30	-14.10	0.661971830985915	10	2-14,1359-1347	1-1,1360-1360[UP5];15-21,1346-1340[UP3]	.......(((((((((((((.&.))))))))))))).......	GUGUCCGGUUAUAUAGAGUGG&AUAUUCUAUAUAACAAUAAUU	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2088_c0_g1_1351_TPlot.pdf
TRINITY_DN2088_c0_g2:1391	si_a763	TRINITY_DN2088_c0_g2	1381	1400	1391	-28.80	-20.10	0.697916666666667	5.5	2-12,1399-1389;14-21,1388-1381	1-1,1400-1400[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	UGGAUCGG-CAGAAACUCAAG&UUUGGGUUUUUGAUUGAUUCA	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2088_c0_g2_1391_TPlot.pdf
TRINITY_DN20898_c0_g1:528	si_a1	TRINITY_DN20898_c0_g1	518	537	528	-28.30	-19.90	0.703180212014134	3.5	2-14,536-524;16-21,523-518	1-1,537-537[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	GUUUUC-CUUUAAUUUCAAUA&AAUUGAAAUUGAAGAGAAAGC	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN20898_c0_g1_528_TPlot.pdf
TRINITY_DN2089_c0_g1:2646	si_a871	TRINITY_DN2089_c0_g1	2636	2655	2646	-26.40	-18.70	0.708333333333333	11	6-18,2650-2638;20-21,2637-2636	1-5,2655-2651[UP5];19-19,x-x[BULq]	((-(((((((((((((.....&.....))))))))))))).))	GA-UGCAACUGAAUCUACAGC&AUUAAAGAUUUAGUUGCAAUC	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN2089_c0_g1_2646_TPlot.pdf
TRINITY_DN2089_c0_g1:2880	si_s227	TRINITY_DN2089_c0_g1	2870	2890	2880	-34.80	-22.70	0.652298850574713	5	1-4,2890-2887;5-12,2885-2878;14-16,2877-2875;18-20,2873-2871	x-x,2886-2886[BULt];13-13,x-x[BULq];17-17,2874-2874[SIL];21-21,2870-2870[UP3]	.(((.(((-((((((((.((((&))))-)))))))).))).))).	AUGACUCC-UAUUCACGACGGU&ACCG-CGUGAAUAAGGAAUCAA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s227_TRINITY_DN2089_c0_g1_2880_TPlot.pdf
TRINITY_DN2089_c0_g1:2882	si_s225	TRINITY_DN2089_c0_g1	2872	2892	2882	-34.00	-22.20	0.652941176470588	5	2-6,2891-2887;7-14,2885-2878;16-18,2877-2875;20-21,2873-2872	1-1,2892-2892[UP5];x-x,2886-2886[BULt];15-15,x-x[BULq];19-19,2874-2874[SIL]	((.(((-((((((((.(((((.&.)))))-)))))))).))).))	GACUCC-UAUUCACGACGGUUC&AAACCG-CGUGAAUAAGGAAUC	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s225_TRINITY_DN2089_c0_g1_2882_TPlot.pdf
TRINITY_DN2089_c0_g1:2889	si_s219	TRINITY_DN2089_c0_g1	2877	2899	2889	-33.80	-22.00	0.650887573964497	10	2-5,2898-2895;8-12,2891-2887;13-20,2885-2878	1-1,2899-2899[UP5];6-7,2894-2892[AILt];x-x,2886-2886[BULt];21-21,2877-2877[UP3]	.((((((((.(((((...((((.&.))))-..)))))-)))))))).	CUAUUCACGACGGUUCAAGAACG&UGUUC-GAAACCG-CGUGAAUAA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN2089_c0_g1_2889_TPlot.pdf
TRINITY_DN2089_c0_g1:3903	si_s437	TRINITY_DN2089_c0_g1	3890	3912	3903	-19.70	-13.58	0.689340101522843	10.5	1-10,3912-3903;13-20,3898-3891	11-12,3902-3899[AILt];21-21,3890-3890[UP3]	.((((((((....((((((((((&))))))))))--..)))))))).	GUAUGUAUAUCUGAUGUAAUUGU&AUAAUUACAU--AUUAUAUAUAA	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2089_c0_g1_3903_TPlot.pdf
TRINITY_DN2089_c0_g1:571	si_s90	TRINITY_DN2089_c0_g1	559	580	571	-35.30	-23.90	0.677053824362606	5.5	1-5,580-576;7-17,574-564;18-20,562-560	6-6,575-575[SIL];x-x,563-563[BULt];21-21,559-559[UP3]	.(((.(((((((((((.(((((&))))).)))))))))))-))).	AUGAUAGCGAGGAAGAUGAAAG&CUUUCUUCUUCUUCGCU-UCGG	2	0.999999489215083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2089_c0_g1_571_TPlot.pdf
TRINITY_DN2089_c0_g1:572	si_s89	TRINITY_DN2089_c0_g1	560	581	572	-35.30	-24.20	0.685552407932011	5.5	2-6,580-576;8-18,574-564;19-20,562-561	1-1,581-581[UP5];7-7,575-575[SIL];x-x,563-563[BULt];21-21,560-560[UP3]	.((.(((((((((((.(((((.&.))))).)))))))))))-)).	UGAUAGCGAGGAAGAUGAAAGU&CCUUUCUUCUUCUUCGCU-UCG	2	0.999997292631147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2089_c0_g1_572_TPlot.pdf
TRINITY_DN2089_c0_g1:573	si_s88	TRINITY_DN2089_c0_g1	561	583	573	-34.80	-24.50	0.704022988505747	5.5	1-2,583-582;3-7,580-576;9-19,574-564;20-21,562-561	x-x,581-581[BULt];8-8,575-575[SIL];x-x,563-563[BULt]	((.(((((((((((.(((((.((&))-))))).)))))))))))-))	GAUAGCGAGGAAGAUGAAAGUGA&UC-CUUUCUUCUUCUUCGCU-UC	3	0.999999922832203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2089_c0_g1_573_TPlot.pdf
TRINITY_DN2089_c0_g1:574	si_s87	TRINITY_DN2089_c0_g1	563	584	574	-32.90	-24.40	0.741641337386018	6.5	2-3,583-582;4-8,580-576;10-20,574-564	1-1,584-584[UP5];x-x,581-581[BULt];9-9,575-575[SIL];21-21,563-563[UP3]	.(((((((((((.(((((.((.&.))-))))).))))))))))).	UAGCGAGGAAGAUGAAAGUGAU&UUC-CUUUCUUCUUCUUCGCUU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2089_c0_g1_574_TPlot.pdf
TRINITY_DN2089_c0_g1:575	si_s86	TRINITY_DN2089_c0_g1	564	585	575	-32.90	-24.40	0.741641337386018	7.5	3-4,583-582;5-9,580-576;11-21,574-564	1-2,585-584[UP5];x-x,581-581[BULt];10-10,575-575[SIL]	(((((((((((.(((((.((..&..))-))))).)))))))))))	AGCGAGGAAGAUGAAAGUGAUG&UUUC-CUUUCUUCUUCUUCGCU	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2089_c0_g1_575_TPlot.pdf
TRINITY_DN2089_c0_g1:576	si_a325	TRINITY_DN2089_c0_g1	565	585	576	-25.90	-17.58	0.678764478764479	10	1-3,585-583;5-10,581-576;14-21,572-565	4-4,582-582[SIL];11-13,575-573[SIL]	((((((((...((((((.(((&))).))))))...))))))))	GCGAGGAAGAUGAAAGUGAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2089_c0_g1_576_TPlot.pdf
TRINITY_DN2089_c0_g1:577	si_a498	TRINITY_DN2089_c0_g1	566	588	577	-33.50	-24.30	0.725373134328358	9.5	2-7,587-582;8-21,579-566	1-1,588-588[UP5];x-x,581-580[BULt]	((((((((((((((..((((((.&.))))))--))))))))))))))	CGAGGAAGAUGAAAGUGAUGAUG&UGUCGUU--UUUCGUCUUCCUUG	2	0.97609923111979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2089_c0_g1_577_TPlot.pdf
TRINITY_DN2089_c0_g1:578	si_a497	TRINITY_DN2089_c0_g1	567	589	578	-32.00	-21.90	0.684375	11	3-8,587-582;9-21,579-567	1-2,589-588[UP5];x-x,581-580[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	GAGGAAGAUGAAAGUGAUGAUGG&AUGUCGUU--UUUCGUCUUCCUU	3	0.999999999975549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2089_c0_g1_578_TPlot.pdf
TRINITY_DN208_c0_g1:611	si_a780	TRINITY_DN208_c0_g1	600	620	611	-27.30	-19.50	0.714285714285714	10.5	6-20,615-601	1-5,620-616[UP5];21-21,600-600[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGGAAAAUAGAAGAGAAUAC&UUCAACUCUUCUAUUUUUCUA	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN208_c0_g1_611_TPlot.pdf
TRINITY_DN2091_c1_g1:24	si_s377	TRINITY_DN2091_c1_g1	11	33	24	-44.10	-31.20	0.707482993197279	8.5	3-6,31-28;8-12,26-22;13-16,20-17;17-21,15-11	1-2,33-32[UP5];7-7,27-27[SIL];x-x,21-21[BULt];x-x,16-16[BULt]	(((((.((((.(((((.((((..&..)))).)))))-))))-)))))	GUGAGAGCGGCACACGGGAGCAC&UCGCUCGCGUGU-CCGC-CUUAC	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN2091_c1_g1_24_TPlot.pdf
TRINITY_DN20923_c0_g1:1316	si_a451	TRINITY_DN20923_c0_g1	1305	1326	1316	-23.60	-15.70	0.665254237288135	6.5	1-3,1326-1324;5-12,1321-1314;14-21,1312-1305	4-4,1323-1322[AILt];13-13,1313-1313[SIL]	((((((((.((((((((..(((&)))-.)))))))).))))))))	UAUGUAUAUCAGCAAUUCUUCU&AGA-UAAUUGUUGUUAUAUAUA	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN20923_c0_g1_1316_TPlot.pdf
TRINITY_DN2092_c0_g1:2388	si_a633	TRINITY_DN2092_c0_g1	2377	2397	2388	-26.40	-18.30	0.693181818181818	13.5	5-16,2393-2382;18-20,2380-2378	1-4,2397-2394[UP5];17-17,2381-2381[SIL];21-21,2377-2377[UP3]	.(((.((((((((((((....&....)))))))))))).))).	GGCUGGGAAGGAUCGGCGAUU&UUAUGUCGAUUUUUUUGAGUA	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2092_c0_g1_2388_TPlot.pdf
TRINITY_DN2093_c0_g1:2297	si_s899	TRINITY_DN2093_c0_g1	2287	2306	2297	-28.30	-18.50	0.653710247349823	8	1-11,2306-2296;14-19,2294-2289	12-13,2295-2295[AILq];20-21,2288-2287[UP3]	..((((((.-(((((((((((&)))))))))))..))))))..	UUUUGAGAA-GGAGAGGAAGU&GCUUUCUCUUCAAUUUCAAUU	2	0.999999858259876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2093_c0_g1_2297_TPlot.pdf
TRINITY_DN2093_c0_g1:2302	si_s75	TRINITY_DN2093_c0_g1	2291	2311	2302	-24.00	-16.50	0.6875	7.5	1-5,2311-2307;7-19,2305-2293	6-6,2306-2306[SIL];20-21,2292-2291[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	GAGAAGGAGAGGAAGUAAAUG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2093_c0_g1_2302_TPlot.pdf
TRINITY_DN2093_c0_g1:2303	si_s74	TRINITY_DN2093_c0_g1	2292	2312	2303	-25.00	-17.20	0.688	8	2-6,2311-2307;8-20,2305-2293	1-1,2312-2312[UP5];7-7,2306-2306[SIL];21-21,2292-2292[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAAGGAGAGGAAGUAAAUGA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2093_c0_g1_2303_TPlot.pdf
TRINITY_DN2093_c0_g1:2304	si_s69	TRINITY_DN2093_c0_g1	2293	2316	2304	-23.40	-17.10	0.730769230769231	12.5	3-6,2314-2311;7-21,2307-2293	1-2,2316-2315[UP5];x-x,2310-2308[BULt]	(((((((((((((((...((((..&..))))---)))))))))))))))	GAAGGAGAGGAAGUAAAUGAAGGA&AACUUC---UAUUUUUUUUCUUUC	3	0.999999999950339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2093_c0_g1_2304_TPlot.pdf
TRINITY_DN2093_c0_g1:2305	si_s72	TRINITY_DN2093_c0_g1	2294	2313	2305	-24.10	-16.30	0.676348547717842	6	1-3,2313-2311;5-8,2310-2307;10-21,2305-2294	4-4,x-x[BULq];9-9,2306-2306[SIL]	((((((((((((.((((-(((&))).)))).))))))))))))	AAGGAGAGGAAGUAAAU-GAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2093_c0_g1_2305_TPlot.pdf
TRINITY_DN2093_c0_g1:2307	si_s70	TRINITY_DN2093_c0_g1	2296	2315	2307	-25.80	-17.50	0.678294573643411	7	2-5,2314-2311;7-10,2310-2307;12-21,2305-2296	1-1,2315-2315[UP5];6-6,x-x[BULq];11-11,2306-2306[SIL]	((((((((((.((((-((((.&.)))).)))).))))))))))	GGAGAGGAAGUAAAU-GAAGG&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2093_c0_g1_2307_TPlot.pdf
TRINITY_DN2093_c0_g1:2308	si_s83	TRINITY_DN2093_c0_g1	2296	2317	2308	-30.90	-20.90	0.676375404530744	6	1-7,2317-2311;9-11,2309-2307;12-21,2305-2296	8-8,2310-2310[SIL];x-x,2306-2306[BULt]	((((((((((.(((.(((((((&))))))).)))-))))))))))	GGAGAGGAAGUAAAUGAAGGAA&UUCUUUCCUUU-CUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2093_c0_g1_2308_TPlot.pdf
TRINITY_DN2093_c0_g1:2309	si_s82	TRINITY_DN2093_c0_g1	2297	2318	2309	-28.90	-18.80	0.650519031141869	7	2-8,2317-2311;10-12,2309-2307;13-21,2305-2297	1-1,2318-2318[UP5];9-9,2310-2310[SIL];x-x,2306-2306[BULt]	(((((((((.(((.(((((((.&.))))))).)))-)))))))))	GAGAGGAAGUAAAUGAAGGAAU&UUUCUUUCCUUU-CUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2093_c0_g1_2309_TPlot.pdf
TRINITY_DN2093_c0_g1:2629	si_s21	TRINITY_DN2093_c0_g1	2618	2638	2629	-27.40	-18.50	0.675182481751825	5.5	1-3,2638-2636;5-19,2634-2620	4-4,2635-2635[SIL];20-21,2619-2618[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	UCUAGUUGUAAUUAAUAAAGU&ACUAUAUUGAUUGCAACUAAA	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN2093_c0_g1_2629_TPlot.pdf
TRINITY_DN2093_c0_g1:2630	si_s20	TRINITY_DN2093_c0_g1	2619	2639	2630	-27.80	-18.50	0.665467625899281	5.5	2-4,2638-2636;6-20,2634-2620	1-1,2639-2639[UP5];5-5,2635-2635[SIL];21-21,2619-2619[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	CUAGUUGUAAUUAAUAAAGUU&UACUAUAUUGAUUGCAACUAA	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN2093_c0_g1_2630_TPlot.pdf
TRINITY_DN2093_c0_g1:2631	si_s19	TRINITY_DN2093_c0_g1	2620	2640	2631	-27.80	-18.20	0.654676258992806	6.5	3-5,2638-2636;7-21,2634-2620	1-2,2640-2639[UP5];6-6,2635-2635[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UAGUUGUAAUUAAUAAAGUUA&UUACUAUAUUGAUUGCAACUA	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN2093_c0_g1_2631_TPlot.pdf
TRINITY_DN2093_c0_g1:475	si_a411	TRINITY_DN2093_c0_g1	464	484	475	-17.90	-11.80	0.659217877094972	11	2-15,483-470	1-1,484-484[UP5];16-21,469-464[UP3]	......((((((((((((((.&.))))))))))))))......	GGGUGCUUAAGUAUGGACGAC&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999975049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2093_c0_g1_475_TPlot.pdf
TRINITY_DN2093_c0_g1:476	si_a410	TRINITY_DN2093_c0_g1	465	485	476	-17.80	-11.80	0.662921348314607	12	3-16,483-470	1-2,485-484[UP5];17-21,469-465[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGUGCUUAAGUAUGGACGACG&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2093_c0_g1_476_TPlot.pdf
TRINITY_DN2093_c0_g2:100	si_a410	TRINITY_DN2093_c0_g2	89	109	100	-17.80	-11.80	0.662921348314607	12	3-16,107-94	1-2,109-108[UP5];17-21,93-89[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGUGCUUAAGUAUGGACGACG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999997609127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2093_c0_g2_100_TPlot.pdf
TRINITY_DN2093_c0_g2:106	si_a404	TRINITY_DN2093_c0_g2	95	120	106	-21.70	-15.12	0.696774193548387	15.5	1-7,120-114;9-21,107-95	8-8,113-108[AILt]	(((((((((((((......(((((((&)))))))-----.)))))))))))))	UAAGUAUGGACGACGGUGCACAGUUC&GAAUUGU-----UUUGUUUAUAUUUA	3	0.999999967025317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2093_c0_g2_106_TPlot.pdf
TRINITY_DN2093_c0_g2:99	si_a411	TRINITY_DN2093_c0_g2	88	108	99	-17.90	-11.80	0.659217877094972	11	2-15,107-94	1-1,108-108[UP5];16-21,93-88[UP3]	......((((((((((((((.&.))))))))))))))......	GGGUGCUUAAGUAUGGACGAC&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999992742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2093_c0_g2_99_TPlot.pdf
TRINITY_DN20940_c0_g1:25	si_s116	TRINITY_DN20940_c0_g1	14	34	25	-24.70	-16.20	0.65587044534413	12	7-17,28-18;19-21,16-14	1-6,34-29[UP5];18-18,17-17[SIL]	(((.(((((((((((......&......))))))))))).)))	ACUGUUCUAUUUUUCACGCGG&AAAAUAGAAAAAUAGAAGAGU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN20940_c0_g1_25_TPlot.pdf
TRINITY_DN20951_c1_g1:147	si_a322	TRINITY_DN20951_c1_g1	136	157	147	-27.00	-17.70	0.655555555555556	9.5	2-5,156-153;8-20,149-137	1-1,157-157[UP5];6-7,152-150[AILt];21-21,136-136[UP3]	.(((((((((((((...((((.&.))))-..))))))))))))).	UGGAAUGAAGAAAUAAUUGGAA&AUCCA-UGAUUUUUUUAUUCCU	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN20951_c1_g1_147_TPlot.pdf
TRINITY_DN2097_c0_g2:264	si_a844	TRINITY_DN2097_c0_g2	253	272	264	-29.20	-19.50	0.667808219178082	7	1-5,272-268;7-17,267-257	6-6,x-x[BULq];18-21,256-253[UP3]	....(((((((((((-(((((&))))).)))))))))))....	AAGGCAAGUUAGCAG-UUCUA&UAGAAGUUGCUAACUUGAAAU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN2097_c0_g2_264_TPlot.pdf
TRINITY_DN2097_c0_g2:265	si_a843	TRINITY_DN2097_c0_g2	254	273	265	-29.30	-19.50	0.665529010238908	7	2-6,272-268;8-18,267-257	1-1,273-273[UP5];7-7,x-x[BULq];19-21,256-254[UP3]	...(((((((((((-(((((.&.))))).)))))))))))...	AGGCAAGUUAGCAG-UUCUAA&AUAGAAGUUGCUAACUUGAAA	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a843_TRINITY_DN2097_c0_g2_265_TPlot.pdf
TRINITY_DN2097_c0_g2:266	si_a842	TRINITY_DN2097_c0_g2	255	274	266	-29.30	-19.50	0.665529010238908	8	3-7,272-268;9-19,267-257	1-2,274-273[UP5];8-8,x-x[BULq];20-21,256-255[UP3]	..(((((((((((-(((((..&..))))).)))))))))))..	GGCAAGUUAGCAG-UUCUAAC&AAUAGAAGUUGCUAACUUGAA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a842_TRINITY_DN2097_c0_g2_266_TPlot.pdf
TRINITY_DN2097_c0_g2:267	si_a841	TRINITY_DN2097_c0_g2	256	275	267	-29.20	-19.50	0.667808219178082	9	4-8,272-268;10-20,267-257	1-3,275-273[UP5];9-9,x-x[BULq];21-21,256-256[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	GCAAGUUAGCAG-UUCUAACA&AAAUAGAAGUUGCUAACUUGA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN2097_c0_g2_267_TPlot.pdf
TRINITY_DN2097_c0_g2:268	si_a840	TRINITY_DN2097_c0_g2	257	276	268	-28.20	-19.30	0.684397163120567	10	5-9,272-268;11-21,267-257	1-4,276-273[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	CAAGUUAGCAG-UUCUAACAC&AAAAUAGAAGUUGCUAACUUG	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a840_TRINITY_DN2097_c0_g2_268_TPlot.pdf
TRINITY_DN20985_c0_g1:538	si_a499	TRINITY_DN20985_c0_g1	527	545	538	-35.20	-23.36	0.663636363636364	12	1-6,545-540;12-21,536-527	7-11,539-537[AILq]	((((((((((...--((((((&)))))).....))))))))))	CCAAGGAAGAAUU--AGCGGC&GUCGUUUUUCGUCUUCCUUGG	3	0.999999999957764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN20985_c0_g1_538_TPlot.pdf
TRINITY_DN20985_c0_g1:622	si_a875	TRINITY_DN20985_c0_g1	611	631	622	-27.10	-18.10	0.66789667896679	7	1-7,631-625;9-18,623-614	8-8,624-624[SIL];19-21,613-611[UP3]	...((((((((((.(((((((&))))))).))))))))))...	CGCUGAUUGCAACAAAGUUUU&AAGAUUUAGUUGCAAUCAAUA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN20985_c0_g1_622_TPlot.pdf
TRINITY_DN20985_c0_g1:624	si_a873	TRINITY_DN20985_c0_g1	613	633	624	-27.00	-20.10	0.744444444444444	5.5	1-9,633-625;11-20,623-614	10-10,624-624[SIL];21-21,613-613[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CUGAUUGCAACAAAGUUUUUG&UAAAGAUUUAGUUGCAAUCAA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN20985_c0_g1_624_TPlot.pdf
TRINITY_DN20985_c0_g1:625	si_a872	TRINITY_DN20985_c0_g1	614	634	625	-27.00	-20.20	0.748148148148148	6	2-10,633-625;12-21,623-614	1-1,634-634[UP5];11-11,624-624[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	UGAUUGCAACAAAGUUUUUGG&UUAAAGAUUUAGUUGCAAUCA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN20985_c0_g1_625_TPlot.pdf
TRINITY_DN20985_c0_g1:626	si_a871	TRINITY_DN20985_c0_g1	615	635	626	-26.40	-18.70	0.708333333333333	8	3-11,633-625;13-21,623-615	1-2,635-634[UP5];12-12,624-624[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GAUUGCAACAAAGUUUUUGGA&AUUAAAGAUUUAGUUGCAAUC	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN20985_c0_g1_626_TPlot.pdf
TRINITY_DN20985_c0_g1:692	si_a723	TRINITY_DN20985_c0_g1	681	701	692	-35.10	-23.40	0.666666666666667	9.5	2-9,700-693;11-11,691-691;13-20,689-682	1-1,701-701[UP5];10-10,692-692[SIL];12-12,690-690[SIL];21-21,681-681[UP3]	.((((((((.(.((((((((.&.)))))))).).)))))))).	AGGGGAUGCGCUGGUGACGAA&AUCGUUACUCGGGCAUCUUUA	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN20985_c0_g1_692_TPlot.pdf
TRINITY_DN20985_c0_g1:693	si_a722	TRINITY_DN20985_c0_g1	682	702	693	-34.70	-22.90	0.659942363112392	9.5	3-10,700-693;12-12,691-691;14-21,689-682	1-2,702-701[UP5];11-11,692-692[SIL];13-13,690-690[SIL]	((((((((.(.((((((((..&..)))))))).).))))))))	GGGGAUGCGCUGGUGACGAAG&AAUCGUUACUCGGGCAUCUUU	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN20985_c0_g1_693_TPlot.pdf
TRINITY_DN20985_c0_g1:695	si_s808	TRINITY_DN20985_c0_g1	678	704	695	-28.60	-19.40	0.678321678321678	17.5	1-12,704-693;13-19,686-680	x-x,692-687[BULt];20-21,679-678[UP3]	..(((((((......((((((((((((&))))))))))))------)))))))..	AGAAGGGGAUGCGCUGGUGACGAAGGU&AUCUUCGUUACC------UUUUCUUAA	3	0.999999938237291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN20985_c0_g1_695_TPlot.pdf
TRINITY_DN20985_c0_g1:696	si_s807	TRINITY_DN20985_c0_g1	679	705	696	-28.90	-20.20	0.698961937716263	11	1-13,705-693;14-20,686-680	x-x,692-687[BULt];21-21,679-679[UP3]	.(((((((......(((((((((((((&)))))))))))))------))))))).	GAAGGGGAUGCGCUGGUGACGAAGGUG&UAUCUUCGUUACC------UUUUCUUA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN20985_c0_g1_696_TPlot.pdf
TRINITY_DN20985_c0_g1:697	si_s806	TRINITY_DN20985_c0_g1	680	706	697	-28.60	-20.30	0.70979020979021	11	1-14,706-693;15-21,686-680	x-x,692-687[BULt]	(((((((......((((((((((((((&))))))))))))))------)))))))	AAGGGGAUGCGCUGGUGACGAAGGUGG&UUAUCUUCGUUACC------UUUUCUU	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN20985_c0_g1_697_TPlot.pdf
TRINITY_DN20985_c0_g1:698	si_s805	TRINITY_DN20985_c0_g1	684	707	698	-28.60	-19.40	0.678321678321678	11.5	2-15,706-693;19-21,686-684	1-1,707-707[UP5];16-18,692-687[AILt]	(((......((((((((((((((.&.))))))))))))))---...)))	GGAUGCGCUGGUGACGAAGGUGGU&UUUAUCUUCGUUACC---UUUUCU	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN20985_c0_g1_698_TPlot.pdf
TRINITY_DN20985_c0_g1:700	si_s803	TRINITY_DN20985_c0_g1	689	709	700	-26.00	-19.40	0.746153846153846	12.5	4-17,706-693	1-3,709-707[UP5];18-21,692-689[UP3]	....((((((((((((((...&...))))))))))))))....	CGCUGGUGACGAAGGUGGUCC&AUUUUAUCUUCGUUACCUUUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN20985_c0_g1_700_TPlot.pdf
TRINITY_DN20985_c0_g1:702	si_s801	TRINITY_DN20985_c0_g1	691	711	702	-28.20	-19.40	0.687943262411348	14.5	6-19,706-693	1-5,711-707[UP5];20-21,692-691[UP3]	..((((((((((((((.....&.....))))))))))))))..	CUGGUGACGAAGGUGGUCCUU&GUAUUUUAUCUUCGUUACCUU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN20985_c0_g1_702_TPlot.pdf
TRINITY_DN20985_c0_g1:703	si_s800	TRINITY_DN20985_c0_g1	692	712	703	-29.70	-19.40	0.653198653198653	15.5	7-20,706-693	1-6,712-707[UP5];21-21,692-692[UP3]	.((((((((((((((......&......)))))))))))))).	UGGUGACGAAGGUGGUCCUUU&CGUAUUUUAUCUUCGUUACCU	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN20985_c0_g1_703_TPlot.pdf
TRINITY_DN2098_c0_g1:3197	si_a8	TRINITY_DN2098_c0_g1	3186	3206	3197	-29.50	-20.20	0.684745762711864	7.5	1-10,3206-3197;12-17,3195-3190	11-11,3196-3196[SIL];18-21,3189-3186[UP3]	....((((((.((((((((((&)))))))))).))))))....	GAUUUAGGUUAUCUCUUCGAU&AUUGAAGAGAAAGCCUAUUUA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN2098_c0_g1_3197_TPlot.pdf
TRINITY_DN2098_c0_g1:3198	si_a7	TRINITY_DN2098_c0_g1	3187	3207	3198	-29.10	-21.10	0.725085910652921	6.5	1-11,3207-3197;13-18,3195-3190	12-12,3196-3196[SIL];19-21,3189-3187[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AUUUAGGUUAUCUCUUCGAUU&AAUUGAAGAGAAAGCCUAUUU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN2098_c0_g1_3198_TPlot.pdf
TRINITY_DN2098_c0_g1:3200	si_a5	TRINITY_DN2098_c0_g1	3189	3209	3200	-31.10	-23.30	0.7491961414791	4	1-13,3209-3197;15-20,3195-3190	14-14,3196-3196[SIL];21-21,3189-3189[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UUAGGUUAUCUCUUCGAUUUU&GAAAUUGAAGAGAAAGCCUAU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN2098_c0_g1_3200_TPlot.pdf
TRINITY_DN2098_c0_g1:3201	si_a4	TRINITY_DN2098_c0_g1	3190	3210	3201	-31.60	-23.50	0.743670886075949	4.5	2-14,3209-3197;16-21,3195-3190	1-1,3210-3210[UP5];15-15,3196-3196[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	UAGGUUAUCUCUUCGAUUUUG&UGAAAUUGAAGAGAAAGCCUA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN2098_c0_g1_3201_TPlot.pdf
TRINITY_DN2098_c0_g1:3202	si_a3	TRINITY_DN2098_c0_g1	3191	3211	3202	-31.30	-22.00	0.702875399361022	6.5	3-15,3209-3197;17-21,3195-3191	1-2,3211-3210[UP5];16-16,3196-3196[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGGUUAUCUCUUCGAUUUUGG&UUGAAAUUGAAGAGAAAGCCU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN2098_c0_g1_3202_TPlot.pdf
TRINITY_DN2098_c0_g1:3203	si_a2	TRINITY_DN2098_c0_g1	3192	3212	3203	-30.70	-22.20	0.723127035830619	5.5	1-16,3212-3197;18-21,3195-3192	17-17,3196-3196[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GGUUAUCUCUUCGAUUUUGGU&AUUGAAAUUGAAGAGAAAGCC	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a2_TRINITY_DN2098_c0_g1_3203_TPlot.pdf
TRINITY_DN2098_c0_g1:621	si_s89	TRINITY_DN2098_c0_g1	610	631	621	-35.30	-23.20	0.657223796033994	8	1-2,631-630;4-18,627-613	3-3,629-628[AILt];19-21,612-610[UP3]	...(((((((((((((((..((&))-.)))))))))))))))...	ACCAGUGGAGAAGAAGAAUUGG&CC-UUUCUUCUUCUUCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2098_c0_g1_621_TPlot.pdf
TRINITY_DN20999_c0_g1:1027	si_a467	TRINITY_DN20999_c0_g1	1015	1036	1027	-21.10	-13.90	0.658767772511848	5.5	1-10,1036-1027;11-20,1025-1016	x-x,1026-1026[BULt];21-21,1015-1015[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	UAUAAUAAUUAUUAUAUUGUAU&AUAUAAUAUG-UAAUUAUUGUU	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN20999_c0_g1_1027_TPlot.pdf
TRINITY_DN20999_c0_g1:1028	si_a466	TRINITY_DN20999_c0_g1	1016	1037	1028	-21.50	-14.70	0.683720930232558	5	1-11,1037-1027;12-21,1025-1016	x-x,1026-1026[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	AUAAUAAUUAUUAUAUUGUAUG&UAUAUAAUAUG-UAAUUAUUGU	0	0.0755410522471688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN20999_c0_g1_1028_TPlot.pdf
TRINITY_DN20999_c0_g1:1029	si_a465	TRINITY_DN20999_c0_g1	1017	1038	1029	-20.90	-14.70	0.703349282296651	5.5	1-12,1038-1027;13-21,1025-1017	x-x,1026-1026[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	UAAUAAUUAUUAUAUUGUAUGU&AUAUAUAAUAUG-UAAUUAUUG	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN20999_c0_g1_1029_TPlot.pdf
TRINITY_DN20999_c0_g1:1030	si_a464	TRINITY_DN20999_c0_g1	1018	1039	1030	-19.60	-15.00	0.76530612244898	3.5	1-13,1039-1027;14-21,1025-1018	x-x,1026-1026[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	AAUAAUUAUUAUAUUGUAUGUA&UAUAUAUAAUAUG-UAAUUAUU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN20999_c0_g1_1030_TPlot.pdf
TRINITY_DN20999_c0_g1:1031	si_a463	TRINITY_DN20999_c0_g1	1019	1040	1031	-19.70	-14.50	0.736040609137056	4.5	2-14,1039-1027;15-21,1025-1019	1-1,1040-1040[UP5];x-x,1026-1026[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AUAAUUAUUAUAUUGUAUGUAU&UUAUAUAUAAUAUG-UAAUUAU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN20999_c0_g1_1031_TPlot.pdf
TRINITY_DN20999_c0_g1:1038	si_s434	TRINITY_DN20999_c0_g1	1027	1049	1038	-21.50	-14.50	0.674418604651163	6.5	1-8,1049-1042;9-15,1039-1033;17-21,1031-1027	x-x,1041-1040[BULt];16-16,1032-1032[SIL]	(((((.(((((((..((((((((&))))))))--))))))).)))))	UAUAUUGUAUGUAUAGUUAUUGU&ACAAUAAU--UACAUAUUAUAUA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN20999_c0_g1_1038_TPlot.pdf
TRINITY_DN209_c0_g1:1233	si_a544	TRINITY_DN209_c0_g1	1221	1242	1233	-28.90	-19.70	0.681660899653979	7	1-5,1242-1238;7-12,1236-1231;14-20,1228-1222	6-6,1237-1237[SIL];13-13,1230-1229[AILt];21-21,1221-1221[UP3]	.(((((((..((((((.(((((&))))).))))))-.))))))).	CGGAGAAAGAAGAUUGUACCGA&UCGGUUCAAUCU-AUUUCUUUA	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN209_c0_g1_1233_TPlot.pdf
TRINITY_DN209_c0_g1:1234	si_a543	TRINITY_DN209_c0_g1	1222	1243	1234	-28.70	-19.50	0.679442508710801	6	2-6,1242-1238;8-13,1236-1231;15-21,1228-1222	1-1,1243-1243[UP5];7-7,1237-1237[SIL];14-14,1230-1229[AILt]	(((((((..((((((.(((((.&.))))).))))))-.)))))))	GGAGAAAGAAGAUUGUACCGAA&AUCGGUUCAAUCU-AUUUCUUU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN209_c0_g1_1234_TPlot.pdf
TRINITY_DN20_c0_g2:1820	si_s207	TRINITY_DN20_c0_g2	1809	1829	1820	-33.00	-22.10	0.66969696969697	9.5	2-4,1828-1826;6-17,1824-1813	1-1,1829-1829[UP5];5-5,1825-1825[SIL];18-21,1812-1809[UP3]	....((((((((((((.(((.&.))).))))))))))))....	ACUAGGGCGCAACUGGCGCAA&AUGUACCAGUUGUGUUCGAAA	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN20_c0_g2_1820_TPlot.pdf
TRINITY_DN20_c0_g2:3159	si_a67	TRINITY_DN20_c0_g2	3147	3168	3159	-27.20	-17.68	0.65	7	1-14,3168-3155;20-21,3148-3147	15-19,3154-3149[AILt]	((......((((((((((((((&))))))))))))))-.....))	GAUGUGAAGGUUUGAAAGAAGC&GCUUCUUUCAAAUU-GUUUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN20_c0_g2_3159_TPlot.pdf
TRINITY_DN20_c0_g2:3162	si_a64	TRINITY_DN20_c0_g2	3151	3174	3162	-29.40	-19.20	0.653061224489796	11	1-3,3174-3172;4-17,3168-3155	x-x,3171-3169[BULt];18-21,3154-3151[UP3]	....((((((((((((((...(((&)))---))))))))))))))....	UGAAGGUUUGAAAGAAGCCACGAG&CUC---GCUUCUUUCAAAUUGUUU	2	0.999942157148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN20_c0_g2_3162_TPlot.pdf
TRINITY_DN20_c0_g2:3166	si_a60	TRINITY_DN20_c0_g2	3155	3180	3166	-32.20	-21.20	0.658385093167702	11.5	1-4,3180-3177;5-7,3174-3172;8-21,3168-3155	x-x,3176-3175[BULt];x-x,3171-3169[BULt]	((((((((((((((...(((..((((&))))--)))---))))))))))))))	GGUUUGAAAGAAGCCACGAGAAUCGG&UCGA--CUC---GCUUCUUUCAAAUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN20_c0_g2_3166_TPlot.pdf
TRINITY_DN20_c0_g2:3183	si_a764	TRINITY_DN20_c0_g2	3172	3191	3183	-28.90	-19.60	0.678200692041523	11	2-7,3190-3185;10-19,3183-3174	1-1,3191-3191[UP5];8-9,3184-3184[AILq];20-21,3173-3172[UP3]	..((((((((((.-((((((.&.))))))..))))))))))..	GAGAAUCGGUCGC-GGCCCAU&UUGGGUUUUUGAUUGAUUCAA	3	0.999988999145849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN20_c0_g2_3183_TPlot.pdf
TRINITY_DN21018_c0_g1:1344	si_a638	TRINITY_DN21018_c0_g1	1333	1353	1344	-24.40	-16.00	0.655737704918033	8	1-2,1353-1352;5-20,1349-1334	3-4,1351-1350[SIL];21-21,1333-1333[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	GAUGUUAUUCAAGAGAAAAGA&UCGAUUUUUUUGAGUAAUAUA	2	0.999968955476022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN21018_c0_g1_1344_TPlot.pdf
TRINITY_DN21018_c0_g1:1345	si_a637	TRINITY_DN21018_c0_g1	1334	1367	1345	-25.80	-17.00	0.65891472868217	30	1-8,1367-1360;9-21,1346-1334	x-x,1359-1347[BULt]	(((((((((((((.............((((((((&))))))))-------------)))))))))))))	AUGUUAUUCAAGAGAAAAGAGACUGCGAGUCGAC&GUCGAUUU-------------UUUUGAGUAAUAU	2	0.999998894989824	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN21018_c0_g1_1345_TPlot.pdf
TRINITY_DN21018_c0_g1:1359	si_a58	TRINITY_DN21018_c0_g1	1347	1368	1359	-34.60	-23.60	0.682080924855491	9.5	2-11,1367-1358;13-17,1355-1351	1-1,1368-1368[UP5];12-12,1357-1356[AILt];18-21,1350-1347[UP3]	....(((((..((((((((((.&.))))))))))-.)))))....	GAAAAGAGACUGCGAGUCGACG&AGUCGACUCGC-UUCUUUCAAA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN21018_c0_g1_1359_TPlot.pdf
TRINITY_DN2103_c0_g1:1189	si_s7	TRINITY_DN2103_c0_g1	1178	1198	1189	-21.70	-14.70	0.67741935483871	7	2-9,1197-1190;11-18,1188-1181	1-1,1198-1198[UP5];10-10,1189-1189[SIL];19-21,1180-1178[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	UUUUAGUAAUGUUAAGUAAUU&UAUUACUUAUUAUUACUAUAU	4	0.999967071746998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN2103_c0_g1_1189_TPlot.pdf
TRINITY_DN2103_c0_g1:1193	si_s3	TRINITY_DN2103_c0_g1	1182	1204	1193	-21.20	-14.00	0.660377358490566	5.5	1-6,1204-1199;7-13,1196-1190;15-21,1188-1182	x-x,1198-1197[BULt];14-14,1189-1189[SIL]	(((((((.(((((((..((((((&))))))--))))))).)))))))	AGUAAUGUUAAGUAAUUUAUAAA&UUUAUA--UUACUUAUUAUUACU	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2103_c0_g1_1193_TPlot.pdf
TRINITY_DN21053_c0_g1:263	si_a792	TRINITY_DN21053_c0_g1	247	272	263	-27.60	-19.70	0.713768115942029	11	2-17,271-256;18-20,250-248	1-1,272-272[UP5];x-x,255-251[BULt];21-21,247-247[UP3]	.(((.....((((((((((((((((.&.))))))))))))))))-----))).	GGGAAACAGUUGGAAGAUGGAAGGAC&AUUUUUCUAUUUUCCAA-----UCCG	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN21053_c0_g1_263_TPlot.pdf
TRINITY_DN21055_c0_g1:2785	si_a75	TRINITY_DN21055_c0_g1	2774	2794	2785	-21.30	-14.10	0.661971830985915	9	1-6,2794-2789;8-16,2787-2779	7-7,2788-2788[SIL];17-21,2778-2774[UP3]	.....(((((((((.((((((&)))))).))))))))).....	UGGACAAUGAAGAAGAGUUUG&CAAAUUGUUUUUCAUUAUUAA	2	0.999999981591236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN21055_c0_g1_2785_TPlot.pdf
TRINITY_DN21055_c0_g1:2786	si_a74	TRINITY_DN21055_c0_g1	2775	2795	2786	-22.20	-15.70	0.707207207207207	8	1-7,2795-2789;9-17,2787-2779	8-8,2788-2788[SIL];18-21,2778-2775[UP3]	....(((((((((.(((((((&))))))).)))))))))....	GGACAAUGAAGAAGAGUUUGA&UCAAAUUGUUUUUCAUUAUUA	4	0.999874024885933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN21055_c0_g1_2786_TPlot.pdf
TRINITY_DN21055_c0_g1:2787	si_a73	TRINITY_DN21055_c0_g1	2776	2796	2787	-21.90	-16.40	0.748858447488584	7	1-8,2796-2789;10-18,2787-2779	9-9,2788-2788[SIL];19-21,2778-2776[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GACAAUGAAGAAGAGUUUGAA&UUCAAAUUGUUUUUCAUUAUU	2	0.969343840465523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN21055_c0_g1_2787_TPlot.pdf
TRINITY_DN21055_c0_g1:2788	si_a72	TRINITY_DN21055_c0_g1	2777	2797	2788	-21.90	-16.50	0.753424657534247	6.5	2-9,2796-2789;11-19,2787-2779	1-1,2797-2797[UP5];10-10,2788-2788[SIL];20-21,2778-2777[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	ACAAUGAAGAAGAGUUUGAAC&UUUCAAAUUGUUUUUCAUUAU	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN21055_c0_g1_2788_TPlot.pdf
TRINITY_DN21055_c0_g1:2789	si_a71	TRINITY_DN21055_c0_g1	2778	2799	2789	-23.30	-16.60	0.712446351931331	6.5	1-2,2799-2798;3-10,2796-2789;12-20,2787-2779	x-x,2797-2797[BULt];11-11,2788-2788[SIL];21-21,2778-2778[UP3]	.(((((((((.((((((((.((&))-)))))))).))))))))).	CAAUGAAGAAGAGUUUGAACAG&CU-UUCAAAUUGUUUUUCAUUA	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN21055_c0_g1_2789_TPlot.pdf
TRINITY_DN21055_c0_g1:2790	si_a70	TRINITY_DN21055_c0_g1	2779	2800	2790	-23.90	-18.00	0.753138075313808	5.5	1-3,2800-2798;4-11,2796-2789;13-21,2787-2779	x-x,2797-2797[BULt];12-12,2788-2788[SIL]	(((((((((.((((((((.(((&)))-)))))))).)))))))))	AAUGAAGAAGAGUUUGAACAGA&UCU-UUCAAAUUGUUUUUCAUU	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN21055_c0_g1_2790_TPlot.pdf
TRINITY_DN21055_c0_g1:696	si_s72	TRINITY_DN21055_c0_g1	683	705	696	-24.10	-19.90	0.825726141078838	7	1-11,705-695;12-21,692-683	x-x,694-693[BULt]	((((((((((..(((((((((((&)))))))))))--))))))))))	AAGGAGAGGAUCAAGGAAUAGAA&UUCUAUUUUUU--UUCUUUCCUU	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN21055_c0_g1_696_TPlot.pdf
TRINITY_DN21055_c0_g1:698	si_s70	TRINITY_DN21055_c0_g1	685	707	698	-25.80	-17.80	0.689922480620155	8	3-13,705-695;14-21,692-685	1-2,707-706[UP5];x-x,694-693[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GGAGAGGAUCAAGGAAUAGAACU&ACUUCUAUUUUUU--UUCUUUCC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN21055_c0_g1_698_TPlot.pdf
TRINITY_DN21055_c0_g1:741	si_s80	TRINITY_DN21055_c0_g1	724	750	741	-28.20	-18.80	0.666666666666667	16	2-10,749-741;11-12,739-738;13-21,732-724	1-1,750-750[UP5];x-x,740-740[BULt];x-x,737-733[BULt]	(((((((((.....((.(((((((((.&.)))))))))-))-----)))))))))	GAGGAAGAGAAAUUGGAGAAAGAAGAG&UUUUUCUUUC-CU-----UUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN21055_c0_g1_741_TPlot.pdf
TRINITY_DN21055_c0_g1:742	si_s79	TRINITY_DN21055_c0_g1	725	751	742	-26.20	-17.30	0.66030534351145	10.5	1-11,751-741;12-13,739-738;14-21,732-725	x-x,740-740[BULt];x-x,737-733[BULt]	((((((((.....((.(((((((((((&)))))))))))-))-----))))))))	AGGAAGAGAAAUUGGAGAAAGAAGAGA&UUUUUUCUUUC-CU-----UUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN21055_c0_g1_742_TPlot.pdf
TRINITY_DN21055_c0_g1:743	si_a785	TRINITY_DN21055_c0_g1	732	750	743	-25.90	-17.50	0.675675675675676	6.5	1-7,750-744;10-16,743-737;18-21,735-732	8-9,x-x[BULq];17-17,736-736[SIL]	((((.(((((((--(((((((&)))))))..))))))).))))	GAAAUUGGAGAA--AGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN21055_c0_g1_743_TPlot.pdf
TRINITY_DN21056_c0_g1:238	si_s552	TRINITY_DN21056_c0_g1	227	247	238	-21.10	-14.40	0.682464454976303	7	3-12,245-236;15-20,233-228	1-2,247-246[UP5];13-14,235-234[SIL];21-21,227-227[UP3]	.((((((..((((((((((..&..))))))))))..)))))).	UGAAAAUUCUAAUUCUGUUGA&AAAAUAGAAUUAAUAUUUUCG	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN21056_c0_g1_238_TPlot.pdf
TRINITY_DN21058_c0_g1:258	si_s889	TRINITY_DN21058_c0_g1	247	267	258	-28.80	-20.60	0.715277777777778	11.5	6-20,262-248	1-5,267-263[UP5];21-21,247-247[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAAGGGGGAGCCUAUUGAACU&AAAUAAAUAGGCUUUCUCUUC	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN21058_c0_g1_258_TPlot.pdf
TRINITY_DN2105_c0_g1:1737	si_a793	TRINITY_DN2105_c0_g1	1725	1746	1737	-28.50	-18.90	0.663157894736842	10.5	4-14,1743-1733;15-19,1731-1727	1-3,1746-1744[UP5];x-x,1732-1732[BULt];20-21,1726-1725[UP3]	..(((((.(((((((((((...&...)))))))))))-)))))..	AUGGGUUGGGAAAGUGGAACUU&UUUUUCUAUUUUCC-AAUCCGA	2	0.999229893489761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN2105_c0_g1_1737_TPlot.pdf
TRINITY_DN2105_c0_g1:1739	si_a791	TRINITY_DN2105_c0_g1	1727	1748	1739	-26.50	-18.20	0.686792452830189	12.5	6-16,1743-1733;17-21,1731-1727	1-5,1748-1744[UP5];x-x,1732-1732[BULt]	(((((.(((((((((((.....&.....)))))))))))-)))))	GGGUUGGGAAAGUGGAACUUUC&UAUUUUUCUAUUUUCC-AAUCC	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN2105_c0_g1_1739_TPlot.pdf
TRINITY_DN2105_c0_g1:1774	si_s75	TRINITY_DN2105_c0_g1	1757	1783	1774	-24.00	-16.90	0.704166666666667	10	3-17,1781-1767;18-21,1760-1757	1-2,1783-1782[UP5];x-x,1766-1761[BULt]	((((......(((((((((((((((..&..)))))))))))))))------))))	AGAAGUUUUUAGGAAAGAAGAAAAAGA&UAUUUUUUUUCUUUCCU------UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2105_c0_g1_1774_TPlot.pdf
TRINITY_DN2105_c0_g1:1775	si_s74	TRINITY_DN2105_c0_g1	1764	1784	1775	-25.00	-16.70	0.668	9	4-18,1781-1767	1-3,1784-1782[UP5];19-21,1766-1764[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUUAGGAAAGAAGAAAAAGAU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2105_c0_g1_1775_TPlot.pdf
TRINITY_DN21061_c0_g1:220	si_a470	TRINITY_DN21061_c0_g1	208	229	220	-21.30	-14.70	0.690140845070423	7	1-10,229-220;11-19,218-210	x-x,219-219[BULt];20-21,209-208[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	UUUAGCAGUGAUUUAUAUAUUA&UAAUAUGUAA-UUAUUGUUAUA	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN21061_c0_g1_220_TPlot.pdf
TRINITY_DN21061_c0_g1:222	si_a468	TRINITY_DN21061_c0_g1	210	231	222	-21.30	-15.60	0.732394366197183	5.5	2-12,230-220;13-21,218-210	1-1,231-231[UP5];x-x,219-219[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	UAGCAGUGAUUUAUAUAUUAUU&UAUAAUAUGUAA-UUAUUGUUA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN21061_c0_g1_222_TPlot.pdf
TRINITY_DN21068_c0_g1:987	si_s653	TRINITY_DN21068_c0_g1	978	996	987	-39.50	-26.00	0.658227848101266	6	1-10,996-987;13-20,986-979	11-12,x-x[BULq];21-21,978-978[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	GCGAUCCCC--AUUGUAUUGA&UCGAUACAAUCGGGGGAUCGA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s653_TRINITY_DN21068_c0_g1_987_TPlot.pdf
TRINITY_DN21069_c0_g2:140	si_s257	TRINITY_DN21069_c0_g2	129	149	140	-28.30	-18.40	0.65017667844523	8	2-6,148-144;8-16,142-134	1-1,149-149[UP5];7-7,143-143[SIL];17-21,133-129[UP3]	.....(((((((((.(((((.&.))))).))))))))).....	ACGGGUGAGUAAUACAUCGGA&CCCGAUAUAUUACUCAAAAAA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s257_TRINITY_DN21069_c0_g2_140_TPlot.pdf
TRINITY_DN2107_c0_g1:941	si_a398	TRINITY_DN2107_c0_g1	930	950	941	-22.40	-14.90	0.665178571428572	11.5	6-21,945-930	1-5,950-946[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAACAAGGCAAUUUUCCUUC&AAUAUAGAAUUGUUUUGUUUA	4	0.999999998106834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2107_c0_g1_941_TPlot.pdf
TRINITY_DN2108_c0_g1:2032	si_s83	TRINITY_DN2108_c0_g1	2018	2041	2032	-30.90	-22.84	0.73915857605178	10	2-12,2040-2030;14-21,2025-2018	1-1,2041-2041[UP5];13-13,2029-2026[AILt]	((((((((....(((((((((((.&.)))))))))))---.))))))))	GGAGAGGAUAAUGAAAGGAAGGAC&UUCUUUCCUUUC---UUCUUCUUC	3	0.999999931658372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2108_c0_g1_2032_TPlot.pdf
TRINITY_DN2108_c0_g1:2033	si_s82	TRINITY_DN2108_c0_g1	2019	2042	2033	-28.90	-20.74	0.717647058823529	9	3-13,2040-2030;15-21,2025-2019	1-2,2042-2041[UP5];14-14,2029-2026[AILt]	(((((((....(((((((((((..&..)))))))))))---.)))))))	GAGAGGAUAAUGAAAGGAAGGACG&UUUCUUUCCUUUC---UUCUUCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2108_c0_g1_2033_TPlot.pdf
TRINITY_DN2108_c0_g1:2035	si_s80	TRINITY_DN2108_c0_g1	2018	2044	2035	-28.20	-18.60	0.659574468085106	15	5-13,2040-2032;14-21,2025-2018	1-4,2044-2041[UP5];x-x,2031-2026[BULt]	((((((((......(((((((((....&....)))))))))------))))))))	GGAGAGGAUAAUGAAAGGAAGGACGGU&UUUUUCUUUCCUU------UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2108_c0_g1_2035_TPlot.pdf
TRINITY_DN2108_c0_g1:2125	si_a191	TRINITY_DN2108_c0_g1	2113	2134	2125	-32.00	-21.10	0.659375	9	4-14,2131-2121;15-18,2119-2116	1-3,2134-2132[UP5];x-x,2120-2120[BULt];19-21,2115-2113[UP3]	...((((.(((((((((((...&...)))))))))))-))))...	AGAUAGUCGAACAGGGAAAAUA&AUCUUUCCCUGUUC-ACUAAUA	4	0.999497737729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN2108_c0_g1_2125_TPlot.pdf
TRINITY_DN2108_c0_g1:2126	si_a190	TRINITY_DN2108_c0_g1	2114	2135	2126	-32.00	-21.10	0.659375	10	5-15,2131-2121;16-19,2119-2116	1-4,2135-2132[UP5];x-x,2120-2120[BULt];20-21,2115-2114[UP3]	..((((.(((((((((((....&....)))))))))))-))))..	GAUAGUCGAACAGGGAAAAUAU&UAUCUUUCCCUGUUC-ACUAAU	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN2108_c0_g1_2126_TPlot.pdf
TRINITY_DN2108_c0_g1:2127	si_a189	TRINITY_DN2108_c0_g1	2115	2135	2127	-32.10	-21.50	0.669781931464174	4	1-4,2135-2132;6-16,2131-2121;17-20,2119-2116	5-5,x-x[BULq];x-x,2120-2120[BULt];21-21,2115-2115[UP3]	.((((.(((((((((((-((((&)))).)))))))))))-)))).	AUAGUCGAACAGGGAAA-AUAU&AUAUCUUUCCCUGUUC-ACUAA	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN2108_c0_g1_2127_TPlot.pdf
TRINITY_DN2108_c0_g1:2128	si_a188	TRINITY_DN2108_c0_g1	2116	2136	2128	-32.00	-21.60	0.675	4	2-5,2135-2132;7-17,2131-2121;18-21,2119-2116	1-1,2136-2136[UP5];6-6,x-x[BULq];x-x,2120-2120[BULt]	((((.(((((((((((-((((.&.)))).)))))))))))-))))	UAGUCGAACAGGGAAA-AUAUG&AAUAUCUUUCCCUGUUC-ACUA	2	0.971549756688101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN2108_c0_g1_2128_TPlot.pdf
TRINITY_DN2108_c0_g1:585	si_s437	TRINITY_DN2108_c0_g1	574	594	585	-19.70	-13.60	0.690355329949239	10	2-5,593-590;7-19,588-576	1-1,594-594[UP5];6-6,589-589[SIL];20-21,575-574[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AAGUGUGUGGUGUGUUAUUGG&AUAAUUACAUAUUAUAUAUAA	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2108_c0_g1_585_TPlot.pdf
TRINITY_DN2109_c0_g2:241	si_s7	TRINITY_DN2109_c0_g2	230	249	241	-21.70	-16.50	0.76036866359447	7	1-7,249-243;9-19,242-232	8-8,x-x[BULq];20-21,231-230[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	CCGUAGUAGUAGU-AGUAGUA&UAUUACUUAUUAUUACUAUAU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN2109_c0_g2_241_TPlot.pdf
TRINITY_DN2109_c0_g2:243	si_s5	TRINITY_DN2109_c0_g2	232	251	243	-21.70	-16.30	0.751152073732719	8	3-9,249-243;11-21,242-232	1-2,251-250[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	GUAGUAGUAGU-AGUAGUAGU&UAUAUUACUUAUUAUUACUAU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN2109_c0_g2_243_TPlot.pdf
TRINITY_DN2109_c0_g2:244	si_s771	TRINITY_DN2109_c0_g2	233	252	244	-25.20	-18.90	0.75	7.5	1-5,252-248;7-19,247-235	6-6,x-x[BULq];20-21,234-233[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	UAGUAGUAGUAGUAG-UAGUC&GAUUAAUUACUAUUGCUAUAA	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN2109_c0_g2_244_TPlot.pdf
TRINITY_DN2109_c0_g2:245	si_s770	TRINITY_DN2109_c0_g2	234	253	245	-26.60	-19.00	0.714285714285714	7.5	2-6,252-248;8-20,247-235	1-1,253-253[UP5];7-7,x-x[BULq];21-21,234-234[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	AGUAGUAGUAGUAG-UAGUCA&CGAUUAAUUACUAUUGCUAUA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN2109_c0_g2_245_TPlot.pdf
TRINITY_DN2109_c0_g2:305	si_s776	TRINITY_DN2109_c0_g2	291	314	305	-25.10	-16.70	0.665338645418327	11.5	2-10,313-305;11-19,301-293	1-1,314-314[UP5];x-x,304-302[BULt];20-21,292-291[UP3]	..(((((((((...(((((((((.&.)))))))))---)))))))))..	GAGUUUUGUAGUAACAAUGGUGAC&AUUACUAUUG---CUAUAAAACAA	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN2109_c0_g2_305_TPlot.pdf
TRINITY_DN2109_c0_g2:306	si_s775	TRINITY_DN2109_c0_g2	292	315	306	-25.00	-16.70	0.668	12.5	3-11,313-305;12-20,301-293	1-2,315-314[UP5];x-x,304-302[BULt];21-21,292-292[UP3]	.(((((((((...(((((((((..&..)))))))))---))))))))).	AGUUUUGUAGUAACAAUGGUGACC&AAUUACUAUUG---CUAUAAAACA	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN2109_c0_g2_306_TPlot.pdf
TRINITY_DN2109_c0_g2:307	si_s774	TRINITY_DN2109_c0_g2	293	316	307	-24.70	-16.20	0.65587044534413	13.5	4-12,313-305;13-21,301-293	1-3,316-314[UP5];x-x,304-302[BULt]	(((((((((...(((((((((...&...)))))))))---)))))))))	GUUUUGUAGUAACAAUGGUGACCG&UAAUUACUAUUG---CUAUAAAAC	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN2109_c0_g2_307_TPlot.pdf
TRINITY_DN210_c0_g1:1067	si_s68	TRINITY_DN210_c0_g1	1056	1077	1067	-23.10	-15.22	0.658874458874459	11.5	1-8,1077-1070;12-19,1065-1058	9-11,1069-1066[AILt];20-21,1057-1056[UP3]	..((((((((....((((((((&))))))))-...))))))))..	CCAGAAGAAAUAAAGGAAGUUG&CAACUUCU-AUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN210_c0_g1_1067_TPlot.pdf
TRINITY_DN210_c0_g1:1077	si_a630	TRINITY_DN210_c0_g1	1066	1087	1077	-25.80	-17.60	0.682170542635659	6.5	1-3,1087-1085;4-19,1083-1068	x-x,1084-1084[BULt];20-21,1067-1066[UP3]	..((((((((((((((((.(((&)))-))))))))))))))))..	UAAAGGAAGUUGACAUAAUUAC&GUA-UUAUGUCGAUUUUUUUGA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN210_c0_g1_1077_TPlot.pdf
TRINITY_DN210_c0_g1:1078	si_a629	TRINITY_DN210_c0_g1	1067	1088	1078	-26.30	-17.70	0.673003802281369	6.5	2-4,1087-1085;5-20,1083-1068	1-1,1088-1088[UP5];x-x,1084-1084[BULt];21-21,1067-1067[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	AAAGGAAGUUGACAUAAUUACA&CGUA-UUAUGUCGAUUUUUUUG	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN210_c0_g1_1078_TPlot.pdf
TRINITY_DN210_c0_g1:1099	si_s77	TRINITY_DN210_c0_g1	1089	1108	1099	-25.50	-16.70	0.654901960784314	5	1-6,1108-1103;8-14,1101-1095;17-21,1093-1089	7-7,1102-1102[SIL];15-16,1094-1094[AILq]	(((((.-(((((((.((((((&)))))).)))))))..)))))	GAAGAC-GGAAAGACAAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN210_c0_g1_1099_TPlot.pdf
TRINITY_DN210_c0_g1:1155	si_s76	TRINITY_DN210_c0_g1	1143	1164	1155	-23.60	-16.10	0.682203389830509	5.5	2-13,1163-1152;14-15,1150-1149;17-21,1147-1143	1-1,1164-1164[UP5];x-x,1151-1151[BULt];16-16,1148-1148[SIL]	(((((.((.((((((((((((.&.))))))))))))-)).)))))	AAGGAUGGAAAAGAAGAGAAAA&AUUUUUUUUCUUU-CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN210_c0_g1_1155_TPlot.pdf
TRINITY_DN210_c0_g1:1346	si_a154	TRINITY_DN210_c0_g1	1335	1355	1346	-27.00	-18.30	0.677777777777778	11	2-7,1354-1349;10-18,1346-1338	1-1,1355-1355[UP5];8-9,1348-1347[SIL];19-21,1337-1335[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	AAGAGAUUGACCAAGAAGCGC&UUGUUUUAAGGUCAAUCUAUU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN210_c0_g1_1346_TPlot.pdf
TRINITY_DN210_c0_g1:1348	si_a152	TRINITY_DN210_c0_g1	1337	1356	1348	-29.20	-19.00	0.650684931506849	10	1-3,1356-1354;5-9,1353-1349;12-20,1346-1338	4-4,x-x[BULq];10-11,1348-1347[SIL];21-21,1337-1337[UP3]	.(((((((((..(((((-(((&))).)))))..))))))))).	GAGAUUGACCAAGAAGC-GCA&UGUUGUUUUAAGGUCAAUCUA	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN210_c0_g1_1348_TPlot.pdf
TRINITY_DN210_c0_g1:1875	si_a548	TRINITY_DN210_c0_g1	1864	1884	1875	-27.20	-19.00	0.698529411764706	11	5-9,1880-1876;12-21,1873-1864	1-4,1884-1881[UP5];10-11,1875-1874[SIL]	((((((((((..(((((....&....)))))..))))))))))	GAGAUAAAGAUUUAGAUCUCA&UUCAAUCUAUUUCUUUAUCUC	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN210_c0_g1_1875_TPlot.pdf
TRINITY_DN210_c0_g1:2030	si_s76	TRINITY_DN210_c0_g1	2019	2041	2030	-23.60	-17.28	0.732203389830508	10.5	1-6,2041-2036;9-21,2031-2019	7-8,2035-2032[AILt]	(((((((((((((....((((((&))))))--..)))))))))))))	AAGAAAGGGAAGAUACCGGAAAU&AUUUUU--UUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN210_c0_g1_2030_TPlot.pdf
TRINITY_DN210_c0_g1:2605	si_s73	TRINITY_DN210_c0_g1	2589	2614	2605	-24.00	-15.70	0.654166666666667	10.5	3-15,2612-2600;16-21,2594-2589	1-2,2614-2613[UP5];x-x,2599-2595[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	GAAGGAAAAACAAGAAAAAGAGUAAC&UCUAUUUUUUUUCUU-----UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN210_c0_g1_2605_TPlot.pdf
TRINITY_DN210_c0_g1:266	si_s77	TRINITY_DN210_c0_g1	254	275	266	-25.50	-19.20	0.752941176470588	4.5	1-12,275-264;13-14,262-261;16-21,259-254	x-x,263-263[BULt];15-15,260-260[SIL]	((((((.((.((((((((((((&))))))))))))-)).))))))	GAAGGAUGGCAAAGAAGAAAAA&UUUUUUUUCUUU-CCUUUCUUC	3	0.999999999997664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN210_c0_g1_266_TPlot.pdf
TRINITY_DN210_c0_g1:267	si_s76	TRINITY_DN210_c0_g1	255	276	267	-23.60	-16.00	0.677966101694915	4.5	2-13,275-264;14-15,262-261;17-21,259-255	1-1,276-276[UP5];x-x,263-263[BULt];16-16,260-260[SIL]	(((((.((.((((((((((((.&.))))))))))))-)).)))))	AAGGAUGGCAAAGAAGAAAAAA&AUUUUUUUUCUUU-CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN210_c0_g1_267_TPlot.pdf
TRINITY_DN210_c0_g1:2829	si_s71	TRINITY_DN210_c0_g1	2818	2837	2829	-25.70	-17.60	0.684824902723736	5.5	1-5,2837-2833;7-19,2832-2820	6-6,x-x[BULq];20-21,2819-2818[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	ACGGAAGAAAGAAAA-AGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN210_c0_g1_2829_TPlot.pdf
TRINITY_DN210_c0_g1:2831	si_s69	TRINITY_DN210_c0_g1	2820	2839	2831	-23.40	-17.80	0.760683760683761	6	3-7,2837-2833;9-21,2832-2820	1-2,2839-2838[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GGAAGAAAGAAAA-AGAAGGU&AACUUCUAUUUUUUUUCUUUC	2	0.999822692898121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN210_c0_g1_2831_TPlot.pdf
TRINITY_DN210_c0_g1:2832	si_s68	TRINITY_DN210_c0_g1	2821	2840	2832	-23.10	-15.40	0.666666666666667	8	4-8,2837-2833;10-21,2832-2821	1-3,2840-2838[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	GAAGAAAGAAAA-AGAAGGUA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN210_c0_g1_2832_TPlot.pdf
TRINITY_DN210_c0_g1:2877	si_s79	TRINITY_DN210_c0_g1	2866	2886	2877	-26.20	-18.90	0.721374045801527	5.5	1-13,2886-2874;15-18,2872-2869	14-14,2873-2873[SIL];19-21,2868-2866[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AAAAAGAUGGGAAAGAAGAAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN210_c0_g1_2877_TPlot.pdf
TRINITY_DN210_c0_g1:2879	si_s77	TRINITY_DN210_c0_g1	2868	2888	2879	-25.50	-20.50	0.803921568627451	3.5	1-15,2888-2874;17-20,2872-2869	16-16,2873-2873[SIL];21-21,2868-2868[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	AAAGAUGGGAAAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN210_c0_g1_2879_TPlot.pdf
TRINITY_DN210_c0_g1:2880	si_s76	TRINITY_DN210_c0_g1	2869	2889	2880	-23.60	-20.50	0.86864406779661	3.5	2-16,2888-2874;18-21,2872-2869	1-1,2889-2889[UP5];17-17,2873-2873[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	AAGAUGGGAAAGAAGAAAAAC&AUUUUUUUUCUUUCCUUUCUU	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN210_c0_g1_2880_TPlot.pdf
TRINITY_DN210_c0_g1:2881	si_s75	TRINITY_DN210_c0_g1	2870	2890	2881	-24.00	-19.60	0.816666666666667	5.5	3-17,2888-2874;19-21,2872-2870	1-2,2890-2889[UP5];18-18,2873-2873[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	AGAUGGGAAAGAAGAAAAACU&UAUUUUUUUUCUUUCCUUUCU	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN210_c0_g1_2881_TPlot.pdf
TRINITY_DN210_c0_g1:2882	si_s74	TRINITY_DN210_c0_g1	2871	2892	2882	-25.00	-20.00	0.8	4.5	1-3,2892-2890;4-18,2888-2874;20-21,2872-2871	x-x,2889-2889[BULt];19-19,2873-2873[SIL]	((.(((((((((((((((.(((&)))-))))))))))))))).))	GAUGGGAAAGAAGAAAAACUAG&CUA-UUUUUUUUCUUUCCUUUC	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN210_c0_g1_2882_TPlot.pdf
TRINITY_DN210_c0_g1:2884	si_s72	TRINITY_DN210_c0_g1	2873	2894	2884	-24.10	-20.70	0.858921161825726	4.5	1-5,2894-2890;6-20,2888-2874	x-x,2889-2889[BULt];21-21,2873-2873[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	UGGGAAAGAAGAAAAACUAGAA&UUCUA-UUUUUUUUCUUUCCUU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN210_c0_g1_2884_TPlot.pdf
TRINITY_DN210_c0_g1:2885	si_s71	TRINITY_DN210_c0_g1	2874	2895	2885	-25.70	-20.90	0.813229571984436	4.5	2-6,2894-2890;7-21,2888-2874	1-1,2895-2895[UP5];x-x,2889-2889[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	GGGAAAGAAGAAAAACUAGAAA&CUUCUA-UUUUUUUUCUUUCCU	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN210_c0_g1_2885_TPlot.pdf
TRINITY_DN210_c0_g1:2887	si_s69	TRINITY_DN210_c0_g1	2876	2897	2887	-23.40	-16.50	0.705128205128205	7.5	4-8,2894-2890;9-21,2888-2876	1-3,2897-2895[UP5];x-x,2889-2889[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GAAAGAAGAAAAACUAGAAAUA&AACUUCUA-UUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN210_c0_g1_2887_TPlot.pdf
TRINITY_DN210_c0_g1:3060	si_s79	TRINITY_DN210_c0_g1	3048	3069	3060	-26.20	-17.90	0.683206106870229	6	1-10,3069-3060;11-12,3058-3057;14-19,3055-3050	x-x,3059-3059[BULt];13-13,3056-3056[SIL];20-21,3049-3048[UP3]	..((((((.((.((((((((((&))))))))))-)).))))))..	ACGAAGAACGGAAAAGAAGAAA&UUUUUUCUUU-CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN210_c0_g1_3060_TPlot.pdf
TRINITY_DN210_c0_g1:3062	si_s77	TRINITY_DN210_c0_g1	3050	3071	3062	-25.50	-19.40	0.76078431372549	4	1-12,3071-3060;13-14,3058-3057;16-21,3055-3050	x-x,3059-3059[BULt];15-15,3056-3056[SIL]	((((((.((.((((((((((((&))))))))))))-)).))))))	GAAGAACGGAAAAGAAGAAAAA&UUUUUUUUCUUU-CCUUUCUUC	3	0.999999999912465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN210_c0_g1_3062_TPlot.pdf
TRINITY_DN210_c0_g1:3063	si_s76	TRINITY_DN210_c0_g1	3051	3072	3063	-23.60	-16.10	0.682203389830509	4	2-13,3071-3060;14-15,3058-3057;17-21,3055-3051	1-1,3072-3072[UP5];x-x,3059-3059[BULt];16-16,3056-3056[SIL]	(((((.((.((((((((((((.&.))))))))))))-)).)))))	AAGAACGGAAAAGAAGAAAAAA&AUUUUUUUUCUUU-CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN210_c0_g1_3063_TPlot.pdf
TRINITY_DN210_c0_g1:3423	si_a513	TRINITY_DN210_c0_g1	3412	3432	3423	-39.50	-27.40	0.693670886075949	6.5	1-7,3432-3426;9-19,3424-3414	8-8,3425-3425[SIL];20-21,3413-3412[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	AACCGUCUUAUAUCCCGAGGA&UCCUUGGAAUGUAAGGCGGAC	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN210_c0_g1_3423_TPlot.pdf
TRINITY_DN210_c0_g1:3424	si_a512	TRINITY_DN210_c0_g1	3413	3433	3424	-37.80	-28.30	0.748677248677249	5.5	1-8,3433-3426;10-20,3424-3414	9-9,3425-3425[SIL];21-21,3413-3413[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	ACCGUCUUAUAUCCCGAGGAA&UUCCUUGGAAUGUAAGGCGGA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN210_c0_g1_3424_TPlot.pdf
TRINITY_DN210_c0_g1:3425	si_a511	TRINITY_DN210_c0_g1	3414	3434	3425	-38.40	-28.50	0.7421875	5	2-9,3433-3426;11-21,3424-3414	1-1,3434-3434[UP5];10-10,3425-3425[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	CCGUCUUAUAUCCCGAGGAAA&CUUCCUUGGAAUGUAAGGCGG	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN210_c0_g1_3425_TPlot.pdf
TRINITY_DN210_c0_g1:3426	si_a510	TRINITY_DN210_c0_g1	3415	3435	3426	-37.00	-24.80	0.67027027027027	7	3-10,3433-3426;12-21,3424-3415	1-2,3435-3434[UP5];11-11,3425-3425[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	CGUCUUAUAUCCCGAGGAAAU&UCUUCCUUGGAAUGUAAGGCG	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN210_c0_g1_3426_TPlot.pdf
TRINITY_DN210_c0_g1:3533	si_a756	TRINITY_DN210_c0_g1	3523	3542	3533	-33.10	-22.00	0.664652567975831	7	1-12,3542-3531;16-19,3528-3525	13-15,3530-3529[AILq];20-21,3524-3523[UP3]	..((((..-((((((((((((&))))))))))))...))))..	ACCGAGUG-CCAGAGGAGGUU&AACCUCCUUUGGGUUUUUGAU	2	0.999983747890884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN210_c0_g1_3533_TPlot.pdf
TRINITY_DN210_c0_g1:3534	si_a755	TRINITY_DN210_c0_g1	3524	3543	3534	-34.90	-25.80	0.739255014326648	6	1-13,3543-3531;17-20,3528-3525	14-16,3530-3529[AILq];21-21,3524-3524[UP3]	.((((..-(((((((((((((&)))))))))))))...)))).	CCGAGUG-CCAGAGGAGGUUC&GAACCUCCUUUGGGUUUUUGA	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN210_c0_g1_3534_TPlot.pdf
TRINITY_DN210_c0_g1:3535	si_a754	TRINITY_DN210_c0_g1	3518	3544	3535	-34.60	-26.40	0.763005780346821	8.5	1-14,3544-3531;15-20,3524-3519	x-x,3530-3525[BULt];21-21,3518-3518[UP3]	.((((((......((((((((((((((&))))))))))))))------)))))).	AAGAAACCGAGUGCCAGAGGAGGUUCA&UGAACCUCCUUUGG------GUUUUUG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN210_c0_g1_3535_TPlot.pdf
TRINITY_DN210_c0_g1:3537	si_a752	TRINITY_DN210_c0_g1	3526	3546	3537	-34.80	-25.70	0.738505747126437	8.5	3-16,3544-3531	1-2,3546-3545[UP5];17-21,3530-3526[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAGUGCCAGAGGAGGUUCAAG&CAUGAACCUCCUUUGGGUUUU	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN210_c0_g1_3537_TPlot.pdf
TRINITY_DN210_c0_g1:3538	si_a751	TRINITY_DN210_c0_g1	3527	3547	3538	-37.20	-25.70	0.690860215053763	9.5	4-17,3544-3531	1-3,3547-3545[UP5];18-21,3530-3527[UP3]	....((((((((((((((...&...))))))))))))))....	AGUGCCAGAGGAGGUUCAAGA&CCAUGAACCUCCUUUGGGUUU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN210_c0_g1_3538_TPlot.pdf
TRINITY_DN210_c0_g1:732	si_s894	TRINITY_DN210_c0_g1	721	749	732	-29.10	-19.30	0.663230240549828	23.5	3-9,747-741;10-19,732-723	1-2,749-748[UP5];x-x,740-733[BULt];20-21,722-721[UP3]	..((((((((((........(((((((..&..)))))))--------))))))))))..	CUGUUGAAGAGGAAGGUAAAGAGCCUAAU&AAUAGGCUU--------UCUCUUCAAUUU	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN210_c0_g1_732_TPlot.pdf
TRINITY_DN210_c0_g1:736	si_s81	TRINITY_DN210_c0_g1	725	745	736	-28.90	-19.50	0.674740484429066	8.5	3-8,743-738;10-20,736-726	1-2,745-744[UP5];9-9,737-737[SIL];21-21,725-725[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGAAGAGGAAGGUAAAGAGCC&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN210_c0_g1_736_TPlot.pdf
TRINITY_DN210_c0_g1:737	si_s80	TRINITY_DN210_c0_g1	726	746	737	-28.20	-19.10	0.677304964539007	9.5	4-9,743-738;11-21,736-726	1-3,746-744[UP5];10-10,737-737[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAGGAAGGUAAAGAGCCU&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN210_c0_g1_737_TPlot.pdf
TRINITY_DN210_c0_g1:742	si_s892	TRINITY_DN210_c0_g1	723	751	742	-29.50	-19.30	0.654237288135593	25.5	5-11,747-741;12-21,732-723	1-4,751-748[UP5];x-x,740-733[BULt]	((((((((((........(((((((....&....)))))))--------))))))))))	GUUGAAGAGGAAGGUAAAGAGCCUAAUAC&UAAAUAGGCUU--------UCUCUUCAAU	3	0.999999706441462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN210_c0_g1_742_TPlot.pdf
TRINITY_DN210_c0_g1:873	si_a24	TRINITY_DN210_c0_g1	862	882	873	-24.20	-16.30	0.673553719008265	5.5	2-17,881-866	1-1,882-882[UP5];18-21,865-862[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGAUGGAACUAAAAAUAAAA&AUUUAUUUUUAGUUCUAAGAC	2	0.992394551209544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN210_c0_g1_873_TPlot.pdf
TRINITY_DN210_c0_g1:874	si_a23	TRINITY_DN210_c0_g1	863	883	874	-22.80	-16.30	0.714912280701754	6.5	3-18,881-866	1-2,883-882[UP5];19-21,865-863[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAUGGAACUAAAAAUAAAAA&UAUUUAUUUUUAGUUCUAAGA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN210_c0_g1_874_TPlot.pdf
TRINITY_DN210_c0_g1:875	si_a22	TRINITY_DN210_c0_g1	864	884	875	-23.50	-17.30	0.736170212765958	4.5	1-2,884-883;4-19,881-866	3-3,882-882[SIL];20-21,865-864[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	GAUGGAACUAAAAAUAAAAAG&CUAUUUAUUUUUAGUUCUAAG	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN210_c0_g1_875_TPlot.pdf
TRINITY_DN210_c0_g1:876	si_a21	TRINITY_DN210_c0_g1	865	885	876	-24.30	-17.70	0.728395061728395	4.5	2-3,884-883;5-20,881-866	1-1,885-885[UP5];4-4,882-882[SIL];21-21,865-865[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	AUGGAACUAAAAAUAAAAAGA&CCUAUUUAUUUUUAGUUCUAA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN210_c0_g1_876_TPlot.pdf
TRINITY_DN210_c0_g1:877	si_a20	TRINITY_DN210_c0_g1	866	886	877	-26.70	-17.50	0.655430711610487	5.5	3-4,884-883;6-21,881-866	1-2,886-885[UP5];5-5,882-882[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	UGGAACUAAAAAUAAAAAGAU&GCCUAUUUAUUUUUAGUUCUA	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN210_c0_g1_877_TPlot.pdf
TRINITY_DN210_c0_g1:962	si_s83	TRINITY_DN210_c0_g1	951	971	962	-30.90	-20.40	0.660194174757282	5	1-6,971-966;8-18,964-954;21-21,951-951	7-7,965-965[SIL];19-20,953-952[SIL]	(..(((((((((((.((((((&)))))).)))))))))))..)	GUUGAAGAAGAAGGUAAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN210_c0_g1_962_TPlot.pdf
TRINITY_DN210_c0_g1:963	si_s82	TRINITY_DN210_c0_g1	952	972	963	-28.90	-20.10	0.695501730103806	6	2-7,971-966;9-19,964-954	1-1,972-972[UP5];8-8,965-965[SIL];20-21,953-952[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	UUGAAGAAGAAGGUAAAGAAC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN210_c0_g1_963_TPlot.pdf
TRINITY_DN210_c0_g1:964	si_s81	TRINITY_DN210_c0_g1	953	973	964	-28.90	-20.10	0.695501730103806	7	3-8,971-966;10-20,964-954	1-2,973-972[UP5];9-9,965-965[SIL];21-21,953-953[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGAAGAAGAAGGUAAAGAACC&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN210_c0_g1_964_TPlot.pdf
TRINITY_DN210_c0_g1:965	si_s80	TRINITY_DN210_c0_g1	954	974	965	-28.20	-19.70	0.698581560283688	8	4-9,971-966;11-21,964-954	1-3,974-972[UP5];10-10,965-965[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAAGAAGGUAAAGAACCG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN210_c0_g1_965_TPlot.pdf
TRINITY_DN2110_c0_g1:14289	si_a647	TRINITY_DN2110_c0_g1	14277	14298	14289	-29.50	-20.20	0.684745762711864	8.5	3-16,14296-14283;17-18,14281-14280	1-2,14298-14297[UP5];x-x,14282-14282[BULt];19-21,14279-14277[UP3]	...((.((((((((((((((..&..))))))))))))))-))...	GUCUCUCUGAUAUGUUACUCUU&UUGAGUAAUAUAUCGG-GAAAU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN2110_c0_g1_14289_TPlot.pdf
TRINITY_DN2110_c0_g1:15345	si_a162	TRINITY_DN2110_c0_g1	15330	15354	15345	-37.60	-24.70	0.656914893617021	8.5	2-3,15353-15352;5-15,15350-15340;16-20,15335-15331	1-1,15354-15354[UP5];4-4,15351-15351[SIL];x-x,15339-15336[BULt];21-21,15330-15330[UP3]	.(((((....(((((((((((.((.&.)).)))))))))))----))))).	CGCGGGCGCAUGAAUAGAUUGUCCC&AGGUCAAUCUAUUCA----CCCGUC	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a162_TRINITY_DN2110_c0_g1_15345_TPlot.pdf
TRINITY_DN2110_c0_g1:15347	si_a160	TRINITY_DN2110_c0_g1	15332	15356	15347	-35.20	-23.20	0.659090909090909	11	4-5,15353-15352;7-17,15350-15340;18-21,15335-15332	1-3,15356-15354[UP5];6-6,15351-15351[SIL];x-x,15339-15336[BULt]	((((....(((((((((((.((...&...)).)))))))))))----))))	CGGGCGCAUGAAUAGAUUGUCCCGC&UAAGGUCAAUCUAUUCA----CCCG	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a160_TRINITY_DN2110_c0_g1_15347_TPlot.pdf
TRINITY_DN2110_c0_g1:15956	si_s16	TRINITY_DN2110_c0_g1	15945	15965	15956	-25.60	-16.80	0.65625	12.5	5-15,15961-15951;17-19,15949-15947	1-4,15965-15962[UP5];16-16,15950-15950[SIL];20-21,15946-15945[UP3]	..(((.(((((((((((....&....))))))))))).)))..	AAGCAUUCGAUAUGGUGCUUC&UUAUUACUAUAUUGAUUGCAA	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN2110_c0_g1_15956_TPlot.pdf
TRINITY_DN2110_c0_g1:16317	si_a214	TRINITY_DN2110_c0_g1	16306	16327	16317	-28.80	-18.80	0.652777777777778	9.5	1-5,16327-16323;8-12,16319-16315;14-20,16313-16307	6-7,16322-16320[AILt];13-13,16314-16314[SIL];21-21,16306-16306[UP3]	.(((((((.(((((...(((((&)))))-..))))).))))))).	UGCAUGAGAUUGAUGACGUCGA&UCGAC-UAAUUAAACUCAUGUU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a214_TRINITY_DN2110_c0_g1_16317_TPlot.pdf
TRINITY_DN2110_c0_g1:1762	si_a76	TRINITY_DN2110_c0_g1	1750	1771	1762	-21.20	-14.20	0.669811320754717	10.5	4-10,1768-1762;11-21,1760-1750	1-3,1771-1769[UP5];x-x,1761-1761[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UUUGAUGAUGAUAGAGCAAGCA&AAAUUGUUUU-UCAUUAUUAAG	4	0.999999999515261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN2110_c0_g1_1762_TPlot.pdf
TRINITY_DN2110_c0_g1:21605	si_a498	TRINITY_DN2110_c0_g1	21595	21614	21605	-33.50	-22.30	0.665671641791045	8.5	2-12,21613-21603;14-18,21602-21598	1-1,21614-21614[UP5];13-13,x-x[BULq];19-21,21597-21595[UP3]	...(((((-(((((((((((.&.))))))))))).)))))...	UUCGGGAG-CGAGAGAUGACU&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999998649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2110_c0_g1_21605_TPlot.pdf
TRINITY_DN2110_c0_g1:21606	si_a497	TRINITY_DN2110_c0_g1	21596	21615	21606	-32.00	-22.30	0.696875	9.5	3-13,21613-21603;15-19,21602-21598	1-2,21615-21614[UP5];14-14,x-x[BULq];20-21,21597-21596[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	UCGGGAG-CGAGAGAUGACUG&AUGUCGUUUUUCGUCUUCCUU	3	0.999999981292735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2110_c0_g1_21606_TPlot.pdf
TRINITY_DN2110_c0_g1:21741	si_a154	TRINITY_DN2110_c0_g1	21730	21750	21741	-27.00	-18.50	0.685185185185185	9	1-17,21750-21734	18-21,21733-21730[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUCUGAUUGACUUUGAGAUGA&UUGUUUUAAGGUCAAUCUAUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN2110_c0_g1_21741_TPlot.pdf
TRINITY_DN2110_c0_g1:21743	si_a152	TRINITY_DN2110_c0_g1	21732	21752	21743	-29.20	-20.10	0.688356164383562	9	2-19,21751-21734	1-1,21752-21752[UP5];20-21,21733-21732[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CUGAUUGACUUUGAGAUGAUG&UGUUGUUUUAAGGUCAAUCUA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN2110_c0_g1_21743_TPlot.pdf
TRINITY_DN2110_c0_g1:21744	si_a151	TRINITY_DN2110_c0_g1	21733	21753	21744	-28.90	-21.10	0.730103806228374	7.5	1-20,21753-21734	21-21,21733-21733[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UGAUUGACUUUGAGAUGAUGA&UUGUUGUUUUAAGGUCAAUCU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN2110_c0_g1_21744_TPlot.pdf
TRINITY_DN2110_c0_g1:22796	si_a68	TRINITY_DN2110_c0_g1	22784	22805	22796	-25.40	-17.10	0.673228346456693	9	1-11,22805-22795;12-18,22793-22787	x-x,22794-22794[BULt];19-21,22786-22784[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	CAUGAAGCAAUUUUGGGAGGAG&CUUCUUUCAAA-UUGUUUUUCA	2	0.999998999714606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2110_c0_g1_22796_TPlot.pdf
TRINITY_DN2110_c0_g1:22799	si_a66	TRINITY_DN2110_c0_g1	22786	22808	22799	-26.70	-19.00	0.711610486891386	10	1-10,22808-22799;11-20,22796-22787	x-x,22798-22797[BULt];21-21,22786-22786[UP3]	.((((((((((..((((((((((&))))))))))--)))))))))).	UGAAGCAAUUUUGGGAGGAGGUG&CGCUUCUUUC--AAAUUGUUUUU	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2110_c0_g1_22799_TPlot.pdf
TRINITY_DN2110_c0_g1:22852	si_s380	TRINITY_DN2110_c0_g1	22841	22861	22852	-40.00	-26.10	0.6525	10	2-7,22860-22855;9-14,22853-22848	1-1,22861-22861[UP5];8-8,22854-22854[SIL];15-21,22847-22841[UP3]	.......((((((.((((((.&.)))))).)))))).......	AGACACCGGCGGAGACGCGAA&CUCGCGUGUCCGCCUUACAUU	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN2110_c0_g1_22852_TPlot.pdf
TRINITY_DN2110_c0_g1:22859	si_s373	TRINITY_DN2110_c0_g1	22848	22869	22859	-47.30	-32.60	0.689217758985201	7	1-5,22869-22865;8-9,22862-22861;10-14,22859-22855;16-21,22853-22848	6-7,22864-22863[SIL];x-x,22860-22860[BULt];15-15,22854-22854[SIL]	((((((.(((((.((..(((((&)))))..))-))))).))))))	GGCGGAGACGCGAAGACAUCGG&CCGAUCGCU-CGCGUGUCCGCC	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN2110_c0_g1_22859_TPlot.pdf
TRINITY_DN2110_c0_g2:593	si_a758	TRINITY_DN2110_c0_g2	581	602	593	-34.00	-22.50	0.661764705882353	6.5	1-9,602-594;11-13,592-590;14-17,587-584;19-21,583-581	10-10,593-593[SIL];x-x,589-588[BULt];18-18,x-x[BULq]	(((-((((..(((.(((((((((&))))))))).)))--)))).)))	CAA-CAAAUCGACGCAGAGGAGG&CCUCCUUUGGGUU--UUUGAUUG	3	0.999999815717802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2110_c0_g2_593_TPlot.pdf
TRINITY_DN2110_c0_g2:771	si_a504	TRINITY_DN2110_c0_g2	760	780	771	-32.90	-22.40	0.680851063829787	9	4-8,777-773;10-14,771-767;16-21,765-760	1-3,780-778[UP5];9-9,772-772[SIL];15-15,766-766[SIL]	((((((.(((((.(((((...&...))))).))))).))))))	ACAUUUGGAGGAUGACGAUAA&UUUUCGUCUUCCUUGGAAUGU	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN2110_c0_g2_771_TPlot.pdf
TRINITY_DN2110_c0_g2:888	si_s744	TRINITY_DN2110_c0_g2	877	897	888	-28.90	-20.10	0.695501730103806	7.5	1-4,897-894;6-16,892-882	5-5,893-893[SIL];17-21,881-877[UP3]	.....(((((((((((.((((&)))).))))))))))).....	GUGCAGAGGUCAAUCUCUUCA&UGAAUAGAUUGACCUUAAAAC	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s744_TRINITY_DN2110_c0_g2_888_TPlot.pdf
TRINITY_DN2110_c0_g2:889	si_s743	TRINITY_DN2110_c0_g2	878	898	889	-29.00	-20.10	0.693103448275862	7.5	2-5,897-894;7-17,892-882	1-1,898-898[UP5];6-6,893-893[SIL];18-21,881-878[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	UGCAGAGGUCAAUCUCUUCAA&GUGAAUAGAUUGACCUUAAAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN2110_c0_g2_889_TPlot.pdf
TRINITY_DN2110_c0_g3:1613	si_s894	TRINITY_DN2110_c0_g3	1602	1622	1613	-29.10	-20.20	0.694158075601375	8.5	2-4,1621-1619;6-19,1617-1604	1-1,1622-1622[UP5];5-5,1618-1618[SIL];20-21,1603-1602[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	ACAUUGGAGGGAGAGCAUGUG&AAUAGGCUUUCUCUUCAAUUU	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN2110_c0_g3_1613_TPlot.pdf
TRINITY_DN2110_c0_g4:250	si_s90	TRINITY_DN2110_c0_g4	235	258	250	-35.30	-23.60	0.668555240793201	8	1-6,258-253;8-14,252-246;15-20,241-236	7-7,x-x[BULq];x-x,245-242[BULt];21-21,235-235[UP3]	.((((((....(((((((-((((((&)))))).)))))))----)))))).	GCGAAGCAUCUGAAGGAG-AGAAAG&CUUUCUUCUUCUUC----GCUUCGG	4	0.999999999999852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2110_c0_g4_250_TPlot.pdf
TRINITY_DN2110_c0_g4:252	si_s88	TRINITY_DN2110_c0_g4	237	260	252	-34.80	-25.30	0.727011494252874	7	1-8,260-253;10-16,252-246;17-21,241-237	9-9,x-x[BULq];x-x,245-242[BULt]	(((((....(((((((-((((((((&)))))))).)))))))----)))))	GAAGCAUCUGAAGGAG-AGAAAGGA&UCCUUUCUUCUUCUUC----GCUUC	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2110_c0_g4_252_TPlot.pdf
TRINITY_DN2110_c0_g4:256	si_s74	TRINITY_DN2110_c0_g4	245	266	256	-25.00	-19.50	0.78	6	1-5,266-262;6-20,260-246	x-x,261-261[BULt];21-21,245-245[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	UGAAGGAGAGAAAGGACAAUAG&CUAUU-UUUUUUCUUUCCUUUC	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2110_c0_g4_256_TPlot.pdf
TRINITY_DN2110_c0_g4:552	si_s375	TRINITY_DN2110_c0_g4	541	561	552	-44.10	-29.20	0.662131519274376	7	1-8,561-554;10-11,552-551;13-19,549-543	9-9,553-553[SIL];12-12,550-550[SIL];20-21,542-541[UP3]	..(((((((.((.((((((((&)))))))).)).)))))))..	GUGGUGGACCCGAGAGCGAUU&GAUCGCUCGCGUGUCCGCCUU	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN2110_c0_g4_552_TPlot.pdf
TRINITY_DN2110_c0_g6:1296	si_s16	TRINITY_DN2110_c0_g6	1285	1305	1296	-25.60	-16.80	0.65625	12.5	5-15,1301-1291;17-19,1289-1287	1-4,1305-1302[UP5];16-16,1290-1290[SIL];20-21,1286-1285[UP3]	..(((.(((((((((((....&....))))))))))).)))..	AAGCAUUCGAUAUGGUGCUUC&UUAUUACUAUAUUGAUUGCAA	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN2110_c0_g6_1296_TPlot.pdf
TRINITY_DN2110_c0_g6:1657	si_a214	TRINITY_DN2110_c0_g6	1646	1667	1657	-28.80	-18.80	0.652777777777778	9.5	1-5,1667-1663;8-12,1659-1655;14-20,1653-1647	6-7,1662-1660[AILt];13-13,1654-1654[SIL];21-21,1646-1646[UP3]	.(((((((.(((((...(((((&)))))-..))))).))))))).	UGCAUGAGAUUGAUGACGUCGA&UCGAC-UAAUUAAACUCAUGUU	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a214_TRINITY_DN2110_c0_g6_1657_TPlot.pdf
TRINITY_DN2110_c0_g6:2954	si_s310	TRINITY_DN2110_c0_g6	2942	2963	2954	-32.10	-22.08	0.68785046728972	11	1-3,2963-2961;7-13,2957-2951;14-21,2949-2942	4-6,2960-2958[SIL];x-x,2950-2950[BULt]	((((((((.(((((((...(((&)))...)))))))-))))))))	GCAGGAAGCGGCGGAGGUGUCG&CGAAAAUUCUGUC-CUUCUUGU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN2110_c0_g6_2954_TPlot.pdf
TRINITY_DN2110_c0_g6:3746	si_a68	TRINITY_DN2110_c0_g6	3734	3755	3746	-25.40	-17.10	0.673228346456693	9	1-11,3755-3745;12-18,3743-3737	x-x,3744-3744[BULt];19-21,3736-3734[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	CAUGAAGCAAUUUUGGGAGGAG&CUUCUUUCAAA-UUGUUUUUCA	2	0.99999904829412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2110_c0_g6_3746_TPlot.pdf
TRINITY_DN2110_c0_g6:3749	si_a66	TRINITY_DN2110_c0_g6	3736	3758	3749	-26.70	-19.00	0.711610486891386	10	1-10,3758-3749;11-20,3746-3737	x-x,3748-3747[BULt];21-21,3736-3736[UP3]	.((((((((((..((((((((((&))))))))))--)))))))))).	UGAAGCAAUUUUGGGAGGAGGUG&CGCUUCUUUC--AAAUUGUUUUU	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2110_c0_g6_3749_TPlot.pdf
TRINITY_DN2110_c0_g6:3802	si_s380	TRINITY_DN2110_c0_g6	3791	3811	3802	-40.00	-26.10	0.6525	10	2-7,3810-3805;9-14,3803-3798	1-1,3811-3811[UP5];8-8,3804-3804[SIL];15-21,3797-3791[UP3]	.......((((((.((((((.&.)))))).)))))).......	AGACACCGGCGGAGACGCGAA&CUCGCGUGUCCGCCUUACAUU	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN2110_c0_g6_3802_TPlot.pdf
TRINITY_DN2110_c0_g6:3809	si_s373	TRINITY_DN2110_c0_g6	3798	3819	3809	-47.30	-32.60	0.689217758985201	7	1-5,3819-3815;8-9,3812-3811;10-14,3809-3805;16-21,3803-3798	6-7,3814-3813[SIL];x-x,3810-3810[BULt];15-15,3804-3804[SIL]	((((((.(((((.((..(((((&)))))..))-))))).))))))	GGCGGAGACGCGAAGACAUCGG&CCGAUCGCU-CGCGUGUCCGCC	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN2110_c0_g6_3809_TPlot.pdf
TRINITY_DN2110_c0_g6:3974	si_a401	TRINITY_DN2110_c0_g6	3963	3983	3974	-22.60	-16.30	0.721238938053097	8.5	3-3,3981-3981;5-20,3979-3964	1-2,3983-3982[UP5];4-4,3980-3980[SIL];21-21,3963-3963[UP3]	.((((((((((((((((.(..&..).)))))))))))))))).	UUGUAAGCGAAGCAAUUGUCA&AUAGAAUUGUUUUGUUUAUAU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2110_c0_g6_3974_TPlot.pdf
TRINITY_DN2110_c0_g6:685	si_a162	TRINITY_DN2110_c0_g6	670	694	685	-37.60	-24.70	0.656914893617021	8.5	2-3,693-692;5-15,690-680;16-20,675-671	1-1,694-694[UP5];4-4,691-691[SIL];x-x,679-676[BULt];21-21,670-670[UP3]	.(((((....(((((((((((.((.&.)).)))))))))))----))))).	CGCGGGCGCAUGAAUAGAUUGUCCC&AGGUCAAUCUAUUCA----CCCGUC	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a162_TRINITY_DN2110_c0_g6_685_TPlot.pdf
TRINITY_DN2110_c0_g6:687	si_a160	TRINITY_DN2110_c0_g6	672	696	687	-35.20	-23.20	0.659090909090909	11	4-5,693-692;7-17,690-680;18-21,675-672	1-3,696-694[UP5];6-6,691-691[SIL];x-x,679-676[BULt]	((((....(((((((((((.((...&...)).)))))))))))----))))	CGGGCGCAUGAAUAGAUUGUCCCGC&UAAGGUCAAUCUAUUCA----CCCG	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a160_TRINITY_DN2110_c0_g6_687_TPlot.pdf
TRINITY_DN2110_c0_g7:236	si_s184	TRINITY_DN2110_c0_g7	225	251	236	-33.40	-23.86	0.71437125748503	17	1-9,251-243;11-21,235-225	10-10,242-236[AILt]	(((((((((((.......(((((((((&)))))))))------.)))))))))))	CAGAGUGGUUGGGGAAUGUACUCGGGC&GCCCGAGUA------ACGAUUAUUUUG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN2110_c0_g7_236_TPlot.pdf
TRINITY_DN2110_c0_g7:295	si_a502	TRINITY_DN2110_c0_g7	284	307	295	-32.10	-20.90	0.651090342679128	12.5	1-8,307-300;9-17,296-288	x-x,299-297[BULt];18-21,287-284[UP3]	....(((((((((...((((((((&))))))))---)))))))))....	GCCGCAGGGAGGAGACCGAGAAAC&GUUUUUCG---UCUUCCUUGGAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2110_c0_g7_295_TPlot.pdf
TRINITY_DN2110_c0_g7:530	si_a758	TRINITY_DN2110_c0_g7	518	539	530	-34.00	-22.50	0.661764705882353	6.5	1-9,539-531;11-13,529-527;14-17,524-521;19-21,520-518	10-10,530-530[SIL];x-x,526-525[BULt];18-18,x-x[BULq]	(((-((((..(((.(((((((((&))))))))).)))--)))).)))	CAA-CAAAUCGACGCAGAGGAGG&CCUCCUUUGGGUU--UUUGAUUG	4	0.999999798976133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2110_c0_g7_530_TPlot.pdf
TRINITY_DN2110_c0_g7:708	si_a504	TRINITY_DN2110_c0_g7	697	717	708	-32.90	-22.40	0.680851063829787	9	4-8,714-710;10-14,708-704;16-21,702-697	1-3,717-715[UP5];9-9,709-709[SIL];15-15,703-703[SIL]	((((((.(((((.(((((...&...))))).))))).))))))	ACAUUUGGAGGAUGACGAUAA&UUUUCGUCUUCCUUGGAAUGU	3	0.999775402880348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN2110_c0_g7_708_TPlot.pdf
TRINITY_DN2110_c0_g7:825	si_s744	TRINITY_DN2110_c0_g7	814	834	825	-28.90	-20.10	0.695501730103806	7.5	1-4,834-831;6-16,829-819	5-5,830-830[SIL];17-21,818-814[UP3]	.....(((((((((((.((((&)))).))))))))))).....	GUGCAGAGGUCAAUCUCUUCA&UGAAUAGAUUGACCUUAAAAC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s744_TRINITY_DN2110_c0_g7_825_TPlot.pdf
TRINITY_DN2110_c0_g7:826	si_s743	TRINITY_DN2110_c0_g7	815	835	826	-29.00	-20.10	0.693103448275862	7.5	2-5,834-831;7-17,829-819	1-1,835-835[UP5];6-6,830-830[SIL];18-21,818-815[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	UGCAGAGGUCAAUCUCUUCAA&GUGAAUAGAUUGACCUUAAAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN2110_c0_g7_826_TPlot.pdf
TRINITY_DN21129_c0_g1:171	si_a785	TRINITY_DN21129_c0_g1	160	180	171	-25.90	-18.20	0.702702702702703	7.5	1-6,180-175;9-20,172-161	7-8,174-173[SIL];21-21,160-160[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	AGAAGUGGAAAAGGCGAAGAG&CUCUUCUAUUUUUCUAUUUUC	4	0.999999999022058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN21129_c0_g1_171_TPlot.pdf
TRINITY_DN2113_c0_g1:2757	si_a295	TRINITY_DN2113_c0_g1	2746	2765	2757	-27.50	-18.00	0.654545454545455	8	1-4,2765-2762;7-19,2760-2748	5-6,2761-2761[AILq];20-21,2747-2746[UP3]	..(((((((((((((.-((((&))))..)))))))))))))..	UUGCGGAUCUUUUUUC-GUCU&GGAUUUAAAAAAGAUUCGCUU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN2113_c0_g1_2757_TPlot.pdf
TRINITY_DN21147_c0_g1:1433	si_a784	TRINITY_DN21147_c0_g1	1422	1442	1433	-24.70	-16.50	0.668016194331984	8.5	2-9,1441-1434;11-11,1432-1432;13-21,1430-1422	1-1,1442-1442[UP5];10-10,1433-1433[SIL];12-12,1431-1431[SIL]	(((((((((.(.((((((((.&.)))))))).).)))))))))	AGGGUAGAACAUUGGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999971181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN21147_c0_g1_1433_TPlot.pdf
TRINITY_DN21147_c0_g1:1512	si_s803	TRINITY_DN21147_c0_g1	1500	1521	1512	-26.00	-17.20	0.661538461538462	5.5	2-12,1520-1510;14-17,1508-1505;18-21,1503-1500	1-1,1521-1521[UP5];13-13,1509-1509[SIL];x-x,1504-1504[BULt]	((((.((((.(((((((((((.&.))))))))))).))))-))))	GAAAUGGUAUUGAGGAUAAAAG&AUUUUAUCUUCGUUACC-UUUU	2	0.99999998922054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN21147_c0_g1_1512_TPlot.pdf
TRINITY_DN21149_c0_g1:304	si_a304	TRINITY_DN21149_c0_g1	292	313	304	-30.40	-21.00	0.690789473684211	7.5	3-10,311-304;11-21,302-292	1-2,313-312[UP5];x-x,303-303[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GGUAAAUUUAAUGCGAGUCUCG&AAAGAUUCGC-UUGGAUUUAUC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN21149_c0_g1_304_TPlot.pdf
TRINITY_DN2115_c0_g1:383	si_a612	TRINITY_DN2115_c0_g1	371	392	383	-35.10	-23.20	0.660968660968661	7.5	2-7,391-386;9-15,384-378;16-19,376-373	1-1,392-392[UP5];8-8,385-385[SIL];x-x,377-377[BULt];20-21,372-371[UP3]	..((((.(((((((.((((((.&.)))))).)))))))-))))..	UUUGCCUUAGUCGAAUGGGAUG&AAUUCCAAUCGACUA-GGCGUA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN2115_c0_g1_383_TPlot.pdf
TRINITY_DN2115_c0_g1:457	si_s73	TRINITY_DN2115_c0_g1	446	466	457	-24.00	-15.90	0.6625	5	1-15,466-452;18-19,449-448	16-17,451-450[SIL];20-21,447-446[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	CCAGAUAAGAAAGAAAAUAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2115_c0_g1_457_TPlot.pdf
TRINITY_DN2115_c0_g1:458	si_s72	TRINITY_DN2115_c0_g1	447	467	458	-24.10	-16.10	0.66804979253112	5	2-16,466-452;19-20,449-448	1-1,467-467[UP5];17-18,451-450[SIL];21-21,447-447[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	CAGAUAAGAAAGAAAAUAGAU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2115_c0_g1_458_TPlot.pdf
TRINITY_DN2115_c0_g1:461	si_s69	TRINITY_DN2115_c0_g1	449	470	461	-23.40	-15.40	0.658119658119658	8.5	5-19,466-452;20-21,450-449	1-4,470-467[UP5];x-x,451-451[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	GAUAAGAAAGAAAAUAGAUUAA&AACUUCUAUUUUUUUUCUU-UC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2115_c0_g1_461_TPlot.pdf
TRINITY_DN2115_c0_g1:586	si_a327	TRINITY_DN2115_c0_g1	574	597	586	-28.40	-19.40	0.683098591549296	8	1-9,597-589;11-17,585-579;18-21,577-574	10-10,588-586[AILt];x-x,578-578[BULt]	((((.(((((((...(((((((((&)))))))))--.)))))))-))))	GGACAAAGGAGUUGUAAAAAAUCA&UGAUUUUUU--UAUUCCUU-GUCC	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2115_c0_g1_586_TPlot.pdf
TRINITY_DN21163_c0_g1:201	si_a419	TRINITY_DN21163_c0_g1	190	210	201	-23.00	-15.80	0.68695652173913	12.5	7-20,204-191	1-6,210-205[UP5];21-21,190-190[UP3]	.((((((((((((((......&......)))))))))))))).	AGUCCUAUAUUUAUUGCCUGU&UAUUUAAAUAAAUAUAGGAUC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN21163_c0_g1_201_TPlot.pdf
TRINITY_DN21168_c0_g1:1172	si_s525	TRINITY_DN21168_c0_g1	1161	1181	1172	-24.00	-16.40	0.683333333333333	9.5	4-18,1178-1164	1-3,1181-1179[UP5];19-21,1163-1161[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCAGAAGGUGAUUUCGAAAAA&UAAUUCGAAAUCAUUUUUGAU	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN21168_c0_g1_1172_TPlot.pdf
TRINITY_DN21168_c0_g1:1174	si_s523	TRINITY_DN21168_c0_g1	1163	1183	1174	-24.50	-17.40	0.710204081632653	6.5	1-3,1183-1181;6-20,1178-1164	4-5,1180-1179[SIL];21-21,1163-1163[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	AGAAGGUGAUUUCGAAAAAAG&CUUAAUUCGAAAUCAUUUUUG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN21168_c0_g1_1174_TPlot.pdf
TRINITY_DN21168_c0_g1:1175	si_s522	TRINITY_DN21168_c0_g1	1164	1184	1175	-23.80	-19.00	0.798319327731092	5.5	1-4,1184-1181;7-21,1178-1164	5-6,1180-1179[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	GAAGGUGAUUUCGAAAAAAGA&UCUUAAUUCGAAAUCAUUUUU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN21168_c0_g1_1175_TPlot.pdf
TRINITY_DN21168_c0_g1:1176	si_s521	TRINITY_DN21168_c0_g1	1165	1185	1176	-23.90	-18.60	0.778242677824268	5	1-5,1185-1181;8-21,1178-1165	6-7,1180-1179[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	AAGGUGAUUUCGAAAAAAGAA&UUCUUAAUUCGAAAUCAUUUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN21168_c0_g1_1176_TPlot.pdf
TRINITY_DN21168_c0_g1:1177	si_s520	TRINITY_DN21168_c0_g1	1166	1186	1177	-24.00	-17.70	0.7375	6	2-6,1185-1181;9-21,1178-1166	1-1,1186-1186[UP5];7-8,1180-1179[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	AGGUGAUUUCGAAAAAAGAAC&AUUCUUAAUUCGAAAUCAUUU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN21168_c0_g1_1177_TPlot.pdf
TRINITY_DN21168_c0_g1:1178	si_s519	TRINITY_DN21168_c0_g1	1167	1187	1178	-24.40	-16.90	0.692622950819672	8	3-7,1185-1181;10-21,1178-1167	1-2,1187-1186[UP5];8-9,1180-1179[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GGUGAUUUCGAAAAAAGAACC&UAUUCUUAAUUCGAAAUCAUU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN21168_c0_g1_1178_TPlot.pdf
TRINITY_DN2117_c0_g1:1093	si_a410	TRINITY_DN2117_c0_g1	1082	1102	1093	-17.80	-13.00	0.730337078651685	9	1-15,1102-1088	16-21,1087-1082[UP3]	......(((((((((((((((&)))))))))))))))......	GUUACAUAAAUAUGAACAGGA&UUUUGUUUAUAUUUAAAUAAA	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2117_c0_g1_1093_TPlot.pdf
TRINITY_DN2117_c0_g1:1097	si_a406	TRINITY_DN2117_c0_g1	1086	1106	1097	-19.80	-15.40	0.777777777777778	8	1-3,1106-1104;5-19,1102-1088	4-4,1103-1103[SIL];20-21,1087-1086[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	CAUAAAUAUGAACAGGAGAGU&AUUGUUUUGUUUAUAUUUAAA	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2117_c0_g1_1097_TPlot.pdf
TRINITY_DN2117_c0_g1:1107	si_a790	TRINITY_DN2117_c0_g1	1096	1116	1107	-25.80	-17.70	0.686046511627907	8.5	1-9,1116-1108;11-17,1106-1100	10-10,1107-1107[SIL];18-21,1099-1096[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AACAGGAGAGUCGAAAAGUAG&CUAUUUUUCUAUUUUCCAAUC	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN2117_c0_g1_1107_TPlot.pdf
TRINITY_DN2117_c0_g1:1108	si_a789	TRINITY_DN2117_c0_g1	1097	1117	1108	-24.80	-17.80	0.717741935483871	8	2-10,1116-1108;12-18,1106-1100	1-1,1117-1117[UP5];11-11,1107-1107[SIL];19-21,1099-1097[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	ACAGGAGAGUCGAAAAGUAGG&UCUAUUUUUCUAUUUUCCAAU	3	0.999797023763102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2117_c0_g1_1108_TPlot.pdf
TRINITY_DN2117_c0_g1:1111	si_a786	TRINITY_DN2117_c0_g1	1100	1120	1111	-26.60	-19.10	0.718045112781955	7	3-13,1118-1108;15-21,1106-1100	1-2,1120-1119[UP5];14-14,1107-1107[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GGAGAGUCGAAAAGUAGGAAA&UCUUCUAUUUUUCUAUUUUCC	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2117_c0_g1_1111_TPlot.pdf
TRINITY_DN2117_c0_g1:1169	si_s70	TRINITY_DN2117_c0_g1	1158	1178	1169	-25.80	-17.40	0.674418604651163	5.5	1-14,1178-1165;16-19,1164-1161;20-21,1159-1158	15-15,x-x[BULq];x-x,1160-1160[BULt]	((.((((-((((((((((((((&)))))))))))))).))))-))	GGCGAAG-AAAGAAAUAGGGGU&ACUUCUAUUUUUUUUCUUU-CC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2117_c0_g1_1169_TPlot.pdf
TRINITY_DN2117_c0_g1:1170	si_s69	TRINITY_DN2117_c0_g1	1160	1179	1170	-23.40	-15.70	0.670940170940171	6.5	2-15,1178-1165;17-20,1164-1161	1-1,1179-1179[UP5];16-16,x-x[BULq];21-21,1160-1160[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	CGAAG-AAAGAAAUAGGGGUA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2117_c0_g1_1170_TPlot.pdf
TRINITY_DN2117_c0_g1:1171	si_s68	TRINITY_DN2117_c0_g1	1161	1180	1171	-23.10	-15.70	0.67965367965368	7	3-16,1178-1165;18-21,1164-1161	1-2,1180-1179[UP5];17-17,x-x[BULq]	((((-((((((((((((((..&..)))))))))))))).))))	GAAG-AAAGAAAUAGGGGUAU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2117_c0_g1_1171_TPlot.pdf
TRINITY_DN2117_c0_g1:1455	si_s608	TRINITY_DN2117_c0_g1	1444	1464	1455	-26.70	-19.26	0.721348314606742	5	1-12,1464-1453;17-21,1448-1444	13-16,1452-1449[SIL]	(((((....((((((((((((&))))))))))))....)))))	CUUGGUCGCAAGAAAGAUUCG&CGAAUCUUUUUUAAAUCCAAG	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN2117_c0_g1_1455_TPlot.pdf
TRINITY_DN2117_c0_g1:1643	si_s661	TRINITY_DN2117_c0_g1	1631	1652	1643	-35.40	-25.70	0.725988700564972	7.5	2-11,1651-1642;12-20,1640-1632	1-1,1652-1652[UP5];x-x,1641-1641[BULt];21-21,1631-1631[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AGAUCAAUUUAGGUCUCCCGAA&AUCGGGGGAUC-GAAUUGAUUA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN2117_c0_g1_1643_TPlot.pdf
TRINITY_DN2117_c0_g1:1644	si_s660	TRINITY_DN2117_c0_g1	1632	1653	1644	-35.00	-25.20	0.72	8	3-12,1651-1642;13-21,1640-1632	1-2,1653-1652[UP5];x-x,1641-1641[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GAUCAAUUUAGGUCUCCCGAAA&AAUCGGGGGAUC-GAAUUGAUU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN2117_c0_g1_1644_TPlot.pdf
TRINITY_DN2117_c0_g1:1645	si_s659	TRINITY_DN2117_c0_g1	1633	1654	1645	-36.70	-24.10	0.656675749318801	8.5	4-13,1651-1642;14-21,1640-1633	1-3,1654-1652[UP5];x-x,1641-1641[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AUCAAUUUAGGUCUCCCGAAAG&CAAUCGGGGGAUC-GAAUUGAU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s659_TRINITY_DN2117_c0_g1_1645_TPlot.pdf
TRINITY_DN2117_c0_g1:1722	si_a368	TRINITY_DN2117_c0_g1	1710	1732	1722	-28.70	-19.20	0.668989547038327	8	2-9,1731-1724;10-11,1722-1721;12-19,1719-1712	1-1,1732-1732[UP5];x-x,1723-1723[BULt];x-x,1720-1720[BULt];20-21,1711-1710[UP3]	..((((((((.((.((((((((.&.))))))))-))-))))))))..	ACAUCAUUUUGUGUAUCCGGUCG&UGAUCGGAU-CA-AAAAUGAUUU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a368_TRINITY_DN2117_c0_g1_1722_TPlot.pdf
TRINITY_DN2117_c0_g1:1724	si_a367	TRINITY_DN2117_c0_g1	1711	1733	1724	-28.80	-20.70	0.71875	7	1-10,1733-1724;11-12,1722-1721;13-20,1719-1712	x-x,1723-1723[BULt];x-x,1720-1720[BULt];21-21,1711-1711[UP3]	.((((((((.((.((((((((((&))))))))))-))-)))))))).	CAUCAUUUUGUGUAUCCGGUCGA&UUGAUCGGAU-CA-AAAAUGAUU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a367_TRINITY_DN2117_c0_g1_1724_TPlot.pdf
TRINITY_DN2117_c0_g1:1731	si_a360	TRINITY_DN2117_c0_g1	1719	1739	1731	-29.10	-19.30	0.663230240549828	8	1-8,1739-1732;10-17,1731-1724;18-19,1722-1721	9-9,x-x[BULq];x-x,1723-1723[BULt];20-21,1720-1719[UP3]	..((.((((((((-((((((((&)))))))).))))))))-))..	UGUGUAUCCGGUC-GAGUAGAA&UUCUAUUUUGAUCGGAU-CAAA	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN2117_c0_g1_1731_TPlot.pdf
TRINITY_DN2117_c0_g1:1734	si_a356	TRINITY_DN2117_c0_g1	1724	1743	1734	-26.90	-18.30	0.680297397769517	10.5	5-12,1739-1732;14-21,1731-1724	1-4,1743-1740[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	AUCCGGUC-GAGUAGAAACAG&UUAAUUCUAUUUUGAUCGGAU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2117_c0_g1_1734_TPlot.pdf
TRINITY_DN2117_c0_g1:1962	si_s191	TRINITY_DN2117_c0_g1	1951	1971	1962	-26.60	-17.90	0.672932330827068	8	2-15,1970-1957;18-19,1954-1953	1-1,1971-1971[UP5];16-17,1956-1955[SIL];20-21,1952-1951[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	UCCAGGCCAGAAUAGUUGUUU&UAACGAUUAUUUUGGAAUGUA	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN2117_c0_g1_1962_TPlot.pdf
TRINITY_DN21186_c2_g1:131	si_a664	TRINITY_DN21186_c2_g1	120	140	131	-29.60	-20.60	0.695945945945946	8	1-17,140-124	18-21,123-120[UP3]	....(((((((((((((((((&)))))))))))))))))....	GCAUGGAAUUGAUAGGUGUUU&AAAUGCCUAUUGAUUCCUUAU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN21186_c2_g1_131_TPlot.pdf
TRINITY_DN21187_c0_g1:56	si_a412	TRINITY_DN21187_c0_g1	44	65	56	-18.30	-13.10	0.715846994535519	7	3-10,63-56;11-20,54-45	1-2,65-64[UP5];x-x,55-55[BULt];21-21,44-44[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	AGUUUGUUUAACAUAUAAACUU&UUGUUUAUAU-UUAAAUAAAUA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN21187_c0_g1_56_TPlot.pdf
TRINITY_DN2118_c0_g1:243	si_s490	TRINITY_DN2118_c0_g1	233	252	243	-17.80	-12.20	0.685393258426966	6	1-15,252-238;17-18,237-236	16-16,x-x[BULq];19-21,235-233[UP3]	...((-(((((((((((((((&))))))))))))))).))...	UUCUG-UUAUAUUUGAAUAGA&UUUAUUUAAAUAUAAACAAAA	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN2118_c0_g1_243_TPlot.pdf
TRINITY_DN2118_c0_g1:244	si_s489	TRINITY_DN2118_c0_g1	234	253	244	-17.90	-12.20	0.681564245810056	6	2-16,252-238;18-19,237-236	1-1,253-253[UP5];17-17,x-x[BULq];20-21,235-234[UP3]	..((-(((((((((((((((.&.))))))))))))))).))..	UCUG-UUAUAUUUGAAUAGAA&AUUUAUUUAAAUAUAAACAAA	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN2118_c0_g1_244_TPlot.pdf
TRINITY_DN2118_c0_g1:442	si_s428	TRINITY_DN2118_c0_g1	431	451	442	-21.50	-14.50	0.674418604651163	7.5	1-15,451-437	16-21,436-431[UP3]	......(((((((((((((((&)))))))))))))))......	AAGUCGGAUUAUUGUUAUGUA&UAUAUAACAAUAAUUACAUAU	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN2118_c0_g1_442_TPlot.pdf
TRINITY_DN2118_c0_g1:447	si_s423	TRINITY_DN2118_c0_g1	436	456	447	-21.50	-14.70	0.683720930232558	11.5	6-20,451-437	1-5,456-452[UP5];21-21,436-436[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGAUUAUUGUUAUGUAUACCU&UAUUCUAUAUAACAAUAAUUA	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN2118_c0_g1_447_TPlot.pdf
TRINITY_DN2118_c0_g1:448	si_s422	TRINITY_DN2118_c0_g1	437	457	448	-21.30	-14.30	0.671361502347418	12.5	7-21,451-437	1-6,457-452[UP5]	(((((((((((((((......&......)))))))))))))))	GAUUAUUGUUAUGUAUACCUG&AUAUUCUAUAUAACAAUAAUU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2118_c0_g1_448_TPlot.pdf
TRINITY_DN2119_c0_g1:1525	si_a397	TRINITY_DN2119_c0_g1	1509	1534	1525	-24.00	-16.80	0.7	11.5	1-11,1534-1524;12-14,1519-1517;15-21,1515-1509	x-x,1523-1520[BULt];x-x,1516-1516[BULt]	(((((((.(((....(((((((((((&)))))))))))----)))-)))))))	GAGCAAAUGCAGUAAAUUCUGUAUUC&GAAUAUAGAAU----UGU-UUUGUUU	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN2119_c0_g1_1525_TPlot.pdf
TRINITY_DN2119_c0_g1:1526	si_a396	TRINITY_DN2119_c0_g1	1510	1535	1526	-24.70	-16.90	0.684210526315789	11	1-12,1535-1524;13-15,1519-1517;16-21,1515-1510	x-x,1523-1520[BULt];x-x,1516-1516[BULt]	((((((.(((....((((((((((((&))))))))))))----)))-))))))	AGCAAAUGCAGUAAAUUCUGUAUUCU&AGAAUAUAGAAU----UGU-UUUGUU	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN2119_c0_g1_1526_TPlot.pdf
TRINITY_DN2119_c0_g1:1527	si_a395	TRINITY_DN2119_c0_g1	1517	1536	1527	-24.70	-16.70	0.676113360323887	6	2-14,1535-1523;18-21,1520-1517	1-1,1536-1536[UP5];15-17,1522-1521[AILq]	((((..-(((((((((((((.&.)))))))))))))...))))	GCAGUA-AAUUCUGUAUUCUG&AAGAAUAUAGAAUUGUUUUGU	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN2119_c0_g1_1527_TPlot.pdf
TRINITY_DN211_c0_g1:1569	si_a404	TRINITY_DN211_c0_g1	1558	1578	1569	-21.70	-17.00	0.783410138248848	7	1-15,1578-1564	16-21,1563-1558[UP3]	......(((((((((((((((&)))))))))))))))......	UCCAGCUAAACAGAACAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN211_c0_g1_1569_TPlot.pdf
TRINITY_DN211_c0_g1:1570	si_a403	TRINITY_DN211_c0_g1	1559	1579	1570	-22.00	-18.10	0.822727272727273	6	1-16,1579-1564	17-21,1563-1559[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCAGCUAAACAGAACAAUUCU&AGAAUUGUUUUGUUUAUAUUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN211_c0_g1_1570_TPlot.pdf
TRINITY_DN211_c0_g1:1571	si_a402	TRINITY_DN211_c0_g1	1560	1580	1571	-22.40	-18.10	0.808035714285714	6	2-17,1579-1564	1-1,1580-1580[UP5];18-21,1563-1560[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAGCUAAACAGAACAAUUCUC&UAGAAUUGUUUUGUUUAUAUU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN211_c0_g1_1571_TPlot.pdf
TRINITY_DN211_c0_g1:1573	si_a400	TRINITY_DN211_c0_g1	1562	1582	1573	-22.80	-18.10	0.793859649122807	7.5	4-19,1579-1564	1-3,1582-1580[UP5];20-21,1563-1562[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCUAAACAGAACAAUUCUCAG&UAUAGAAUUGUUUUGUUUAUA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN211_c0_g1_1573_TPlot.pdf
TRINITY_DN211_c0_g1:1574	si_a399	TRINITY_DN211_c0_g1	1563	1583	1574	-22.60	-18.10	0.800884955752212	8.5	5-20,1579-1564	1-4,1583-1580[UP5];21-21,1563-1563[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUAAACAGAACAAUUCUCAGU&AUAUAGAAUUGUUUUGUUUAU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN211_c0_g1_1574_TPlot.pdf
TRINITY_DN211_c0_g1:1576	si_a397	TRINITY_DN211_c0_g1	1565	1585	1576	-24.00	-16.50	0.6875	11.5	7-21,1579-1565	1-6,1585-1580[UP5]	(((((((((((((((......&......)))))))))))))))	AAACAGAACAAUUCUCAGUAC&GAAUAUAGAAUUGUUUUGUUU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN211_c0_g1_1576_TPlot.pdf
TRINITY_DN211_c0_g1:1733	si_s72	TRINITY_DN211_c0_g1	1721	1742	1733	-24.10	-16.20	0.672199170124481	6.5	2-4,1741-1739;6-17,1737-1726;18-21,1724-1721	1-1,1742-1742[UP5];5-5,1738-1738[SIL];x-x,1725-1725[BULt]	((((.((((((((((((.(((.&.))).))))))))))))-))))	GAGGAAAAGAAAAGAAAAAGGG&UUCUAUUUUUUUUCUUU-CCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN211_c0_g1_1733_TPlot.pdf
TRINITY_DN211_c0_g1:1734	si_s71	TRINITY_DN211_c0_g1	1722	1745	1734	-25.70	-16.80	0.653696498054475	9	1-5,1745-1741;7-18,1737-1726;19-21,1724-1722	6-6,1740-1738[AILt];x-x,1725-1725[BULt]	(((.((((((((((((...(((((&)))))--.))))))))))))-)))	AGGAAAAGAAAAGAAAAAGGGAAG&CUUCU--AUUUUUUUUCUUU-CCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN211_c0_g1_1734_TPlot.pdf
TRINITY_DN211_c0_g1:1741	si_s80	TRINITY_DN211_c0_g1	1731	1750	1741	-28.20	-18.40	0.652482269503546	4.5	1-14,1750-1737;16-20,1736-1732	15-15,x-x[BULq];21-21,1731-1731[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	AAAGAA-AAAGGGAAGAGAAG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN211_c0_g1_1741_TPlot.pdf
TRINITY_DN211_c0_g1:1745	si_s76	TRINITY_DN211_c0_g1	1732	1754	1745	-23.60	-15.80	0.669491525423729	11.5	5-17,1750-1738;18-21,1735-1732	1-4,1754-1751[UP5];x-x,1737-1736[BULt]	((((..(((((((((((((....&....)))))))))))))--))))	AAGAAAAAGGGAAGAGAAGCAAU&AUUUUUUUUCUUUCCUU--UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN211_c0_g1_1745_TPlot.pdf
TRINITY_DN211_c0_g1:1757	si_a763	TRINITY_DN211_c0_g1	1746	1766	1757	-28.80	-21.10	0.732638888888889	6	2-16,1765-1751;18-20,1749-1747	1-1,1766-1766[UP5];17-17,1750-1750[SIL];21-21,1746-1746[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AGAAGCAAUUAAAGGCCCAAC&UUUGGGUUUUUGAUUGAUUCA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN211_c0_g1_1757_TPlot.pdf
TRINITY_DN211_c0_g1:1875	si_s77	TRINITY_DN211_c0_g1	1859	1885	1875	-25.50	-17.80	0.698039215686275	14.5	1-6,1885-1880;7-11,1878-1874;12-21,1868-1859	x-x,1879-1879[BULt];x-x,1873-1869[BULt]	((((((((((.....(((((.((((((&))))))-)))))-----))))))))))	GAAGAGAGGAUACAAAAGAGCAAAGAA&UUUUUU-UUCUU-----UCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN211_c0_g1_1875_TPlot.pdf
TRINITY_DN211_c0_g1:835	si_s68	TRINITY_DN211_c0_g1	822	844	835	-23.10	-15.10	0.653679653679654	8.5	4-15,841-830;16-21,827-822	1-3,844-842[UP5];x-x,829-828[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	AAAGAAACAAGAAGUAGAAGAAG&CAACUUCUAUUUUUU--UUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN211_c0_g1_835_TPlot.pdf
TRINITY_DN211_c0_g3:432	si_s482	TRINITY_DN211_c0_g3	421	441	432	-21.20	-13.80	0.650943396226415	9.5	1-13,441-429	14-21,428-421[UP3]	........(((((((((((((&)))))))))))))........	CCACAUGUGUAAAUAUAGGGU&AUCCUAUAUUUAUUUAAAUAU	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN211_c0_g3_432_TPlot.pdf
TRINITY_DN211_c0_g3:573	si_a452	TRINITY_DN211_c0_g3	562	589	573	-23.00	-15.40	0.669565217391304	21.5	1-9,589-581;10-19,573-564	x-x,580-574[BULt];20-21,563-562[UP3]	..((((((((((.......(((((((((&)))))))))-------))))))))))..	ACAUGUGUGGCGAUUGUUCGCAGUUAUC&GAUAAUUGU-------UGUUAUAUAUAA	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN211_c0_g3_573_TPlot.pdf
TRINITY_DN211_c0_g3:581	si_a451	TRINITY_DN211_c0_g3	563	590	581	-23.60	-15.50	0.656779661016949	21	2-10,589-581;11-20,573-564	1-1,590-590[UP5];x-x,580-574[BULt];21-21,563-563[UP3]	.((((((((((.......(((((((((.&.)))))))))-------)))))))))).	CAUGUGUGGCGAUUGUUCGCAGUUAUCA&AGAUAAUUGU-------UGUUAUAUAUA	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN211_c0_g3_581_TPlot.pdf
TRINITY_DN21203_c0_g1:2686	si_a547	TRINITY_DN21203_c0_g1	2675	2695	2686	-26.90	-19.40	0.721189591078067	7	1-9,2695-2687;11-15,2685-2681;17-21,2679-2675	10-10,2686-2686[SIL];16-16,2680-2680[SIL]	(((((.(((((.(((((((((&))))))))).))))).)))))	AGAUACAGAGAGAGGUUGGGC&GUUCAAUCUAUUUCUUUAUCU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN21203_c0_g1_2686_TPlot.pdf
TRINITY_DN21203_c0_g1:3663	si_a527	TRINITY_DN21203_c0_g1	3649	3672	3663	-47.30	-32.30	0.682875264270613	12	1-6,3672-3667;9-11,3664-3662;12-20,3658-3650	7-8,3666-3665[SIL];x-x,3661-3659[BULt];21-21,3649-3649[UP3]	.(((((((((...(((..((((((&))))))..)))---))))))))).	GCGAUCGCUCCAAGUGGCUCCGCC&GGCGGACACGC---GAGCGAUCGG	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a527_TRINITY_DN21203_c0_g1_3663_TPlot.pdf
TRINITY_DN21213_c0_g1:1679	si_s617	TRINITY_DN21213_c0_g1	1669	1688	1679	-28.30	-18.90	0.667844522968198	10.5	6-12,1683-1677;14-21,1676-1669	1-5,1688-1684[UP5];13-13,x-x[BULq]	((((((((-(((((((.....&.....))))))).))))))))	AGAAGAUC-CUUGGAUGGGAU&UUUAAAUCCAAGCGAUCUUUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN21213_c0_g1_1679_TPlot.pdf
TRINITY_DN21213_c0_g1:1691	si_a347	TRINITY_DN21213_c0_g1	1680	1700	1691	-23.50	-20.40	0.868085106382979	6	1-5,1700-1696;8-21,1693-1680	6-7,1695-1694[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GGAUGGGAUUAAUAGGUUCGG&CCGAAAAUAUUAAUUCUAUUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN21213_c0_g1_1691_TPlot.pdf
TRINITY_DN21223_c0_g1:93	si_a251	TRINITY_DN21223_c0_g1	76	102	93	-43.80	-30.10	0.687214611872146	10.5	2-15,101-88;16-17,81-80;19-21,78-76	1-1,102-102[UP5];x-x,87-82[BULt];18-18,79-79[SIL]	(((.((......((((((((((((((.&.))))))))))))))------)).)))	GCCGUCUGAGGGGGUGCAAUUGGGGGU&UCCCCCGAUUGUAUC------GAGGGC	1	0.00931934618231856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a251_TRINITY_DN21223_c0_g1_93_TPlot.pdf
TRINITY_DN21239_c0_g1:771	si_a149	TRINITY_DN21239_c0_g1	760	780	771	-29.40	-19.84	0.674829931972789	10	2-9,779-772;15-21,766-760	1-1,780-780[UP5];10-14,771-767[SIL]	(((((((.....((((((((.&.)))))))).....)))))))	AUUGACCAUUUUGCAACAACA&CGUUGUUGUUUUAAGGUCAAU	3	0.999989219606595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN21239_c0_g1_771_TPlot.pdf
TRINITY_DN2123_c0_g3:526	si_a621	TRINITY_DN2123_c0_g3	514	535	526	-36.40	-25.10	0.68956043956044	8	3-12,533-524;13-21,522-514	1-2,535-534[UP5];x-x,523-523[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	UCGAUAUAGCUAUGCCUGGUAG&CGACUAGGCGUA-UUAUGUCGA	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a621_TRINITY_DN2123_c0_g3_526_TPlot.pdf
TRINITY_DN2123_c0_g3:620	si_s613	TRINITY_DN2123_c0_g3	609	630	620	-29.20	-19.40	0.664383561643836	9	1-8,630-623;10-17,620-613;19-21,611-609	9-9,622-621[AILt];18-18,612-612[SIL]	(((.((((((((..((((((((&))))))))-.)))))))).)))	GGUGGUUUGGAUCAUGAAGAGG&CUUUUUUA-AAUCCAAGCGAUC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN2123_c0_g3_620_TPlot.pdf
TRINITY_DN2123_c0_g3:625	si_s609	TRINITY_DN2123_c0_g3	613	634	625	-27.70	-19.00	0.685920577617328	7.5	2-12,633-623;14-21,620-613	1-1,634-634[UP5];13-13,622-621[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	GUUUGGAUCAUGAAGAGGAUUG&GAAUCUUUUUUA-AAUCCAAGC	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN2123_c0_g3_625_TPlot.pdf
TRINITY_DN2123_c0_g3:754	si_a200	TRINITY_DN2123_c0_g3	741	763	754	-29.20	-19.00	0.650684931506849	9	2-12,762-752;13-20,749-742	1-1,763-763[UP5];x-x,751-750[BULt];21-21,741-741[UP3]	.((((((((..(((((((((((.&.)))))))))))--)))))))).	GAGUUGGUUGAUAUUAGUGGAUG&UGUUCACUAAUA--AAUCGACUA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN2123_c0_g3_754_TPlot.pdf
TRINITY_DN2124_c0_g1:165	si_a778	TRINITY_DN2124_c0_g1	154	174	165	-28.30	-19.50	0.68904593639576	7	1-6,174-169;8-20,167-155	7-7,168-168[SIL];21-21,154-154[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	AGGAGGUGGAAGAGGUGGAUU&GAUUCAACUCUUCUAUUUUUC	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN2124_c0_g1_165_TPlot.pdf
TRINITY_DN2124_c0_g1:353	si_a319	TRINITY_DN2124_c0_g1	342	362	353	-22.40	-15.70	0.700892857142857	14	5-18,358-345	1-4,362-359[UP5];19-21,344-342[UP3]	...((((((((((((((....&....))))))))))))))...	GCCGAGGAGGUCGUGGAGGAG&UUUAUCCAUGAUUUUUUUAUU	4	0.999999956363713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2124_c0_g1_353_TPlot.pdf
TRINITY_DN21259_c0_g2:459	si_s628	TRINITY_DN21259_c0_g2	448	469	459	-35.40	-23.20	0.655367231638418	9.5	1-3,469-467;5-14,464-455;16-21,453-448	4-4,466-465[AILt];15-15,454-454[SIL]	((((((.((((((((((..(((&)))-.)))))))))).))))))	GGAUGCGUACGAAGAGGGCUGC&GCG-AUCUUUUCGUAGGCGUUU	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN21259_c0_g2_459_TPlot.pdf
TRINITY_DN21259_c0_g2:929	si_s822	TRINITY_DN21259_c0_g2	918	938	929	-22.30	-16.10	0.721973094170404	5.5	1-16,938-923	17-21,922-918[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUAUAUUUUCAUUAUUAAGAG&UUCUUAAUAAUGAAAAACAAU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN21259_c0_g2_929_TPlot.pdf
TRINITY_DN2126_c0_g1:5202	si_s254	TRINITY_DN2126_c0_g1	5191	5213	5202	-29.40	-19.50	0.663265306122449	9	2-6,5212-5208;7-10,5205-5202;12-20,5200-5192	1-1,5213-5213[UP5];x-x,5207-5206[BULt];11-11,5201-5201[SIL];21-21,5191-5191[UP3]	.(((((((((.((((..(((((.&.)))))--)))).))))))))).	GUUGAGUAAUCUGUCCAGGGAAU&UUUCCC--GAUAUAUUACUCAAA	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN2126_c0_g1_5202_TPlot.pdf
TRINITY_DN2126_c2_g1:60	si_a817	TRINITY_DN2126_c2_g1	47	69	60	-30.90	-21.40	0.692556634304207	4.5	1-12,69-58;13-18,56-51;19-20,49-48	x-x,57-57[BULt];x-x,50-50[BULt];21-21,47-47[UP3]	.((.((((((.((((((((((((&))))))))))))-))))))-)).	AUCAUUUCUUCUUCUUCUUCUUC&GAAGAAGAAGAA-AGGAAA-GAA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN2126_c2_g1_60_TPlot.pdf
TRINITY_DN21275_c0_g3:439	si_a566	TRINITY_DN21275_c0_g3	427	448	439	-36.40	-24.30	0.667582417582418	9.5	1-10,448-439;12-15,436-433;18-21,430-427	11-11,438-437[AILt];16-17,432-431[SIL]	((((..((((..((((((((((&))))))))))-.))))..))))	GAGCUCGCGAAAUUGCGGGGAG&CUCCCCGUGA-AUCGUAUGUUU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN21275_c0_g3_439_TPlot.pdf
TRINITY_DN21275_c0_g3:445	si_s896	TRINITY_DN21275_c0_g3	434	454	445	-31.60	-22.00	0.69620253164557	9	3-12,452-443;14-20,441-435	1-2,454-453[UP5];13-13,442-442[SIL];21-21,434-434[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CGAAAUUGCGGGGAGAGUCGG&UAGGCUUUCUCUUCAAUUUCA	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN21275_c0_g3_445_TPlot.pdf
TRINITY_DN21275_c0_g3:458	si_a764	TRINITY_DN21275_c0_g3	446	468	458	-28.90	-19.60	0.678200692041523	11.5	1-3,468-466;4-12,464-456;13-19,454-448	x-x,465-465[BULt];x-x,455-455[BULt];20-21,447-446[UP3]	..(((((((.(((((((((.(((&)))-)))))))))-)))))))..	GAGAGUCGGCUCGAGAGCCUCGA&UUG-GGUUUUUGA-UUGAUUCAA	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN21275_c0_g3_458_TPlot.pdf
TRINITY_DN21275_c0_g3:460	si_a762	TRINITY_DN21275_c0_g3	448	470	460	-29.70	-20.00	0.673400673400673	9.5	2-5,469-466;6-14,464-456;15-21,454-448	1-1,470-470[UP5];x-x,465-465[BULt];x-x,455-455[BULt]	(((((((.(((((((((.((((.&.))))-)))))))))-)))))))	GAGUCGGCUCGAGAGCCUCGAAU&CUUUG-GGUUUUUGA-UUGAUUC	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN21275_c0_g3_460_TPlot.pdf
TRINITY_DN21275_c0_g3:500	si_a557	TRINITY_DN21275_c0_g3	489	511	500	-33.40	-23.30	0.697604790419162	12.5	1-7,511-505;9-18,501-492	8-8,504-502[AILt];19-21,491-489[UP3]	...((((((((((...(((((((&)))))))--.))))))))))...	GGCCACGGGGGGACUCGGAGAAG&UUUCUUU--AUCUCCCCGUGAAU	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN21275_c0_g3_500_TPlot.pdf
TRINITY_DN21275_c0_g3:509	si_a550	TRINITY_DN21275_c0_g3	496	518	509	-30.90	-20.20	0.653721682847896	10.5	4-14,515-505;16-21,501-496	1-3,518-516[UP5];15-15,504-502[AILt]	((((((...(((((((((((...&...)))))))))))--.))))))	GGGGGACUCGGAGAAGUAGAGAA&CAAUCUAUUUCUUU--AUCUCCC	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN21275_c0_g3_509_TPlot.pdf
TRINITY_DN21275_c0_g3:604	si_a54	TRINITY_DN21275_c0_g3	594	613	604	-37.30	-26.40	0.707774798927614	6	3-13,611-601;15-20,600-595	1-2,613-612[UP5];14-14,x-x[BULq];21-21,594-594[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CAAGAAG-GAGUCGACUUCAA&UAGGAGUCGACUCGCUUCUUU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN21275_c0_g3_604_TPlot.pdf
TRINITY_DN21275_c0_g3:605	si_a53	TRINITY_DN21275_c0_g3	595	614	605	-39.00	-26.40	0.676923076923077	7	4-14,611-601;16-21,600-595	1-3,614-612[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	AAGAAG-GAGUCGACUUCAAA&CUAGGAGUCGACUCGCUUCUU	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN21275_c0_g3_605_TPlot.pdf
TRINITY_DN21276_c0_g2:2056	si_a185	TRINITY_DN21276_c0_g2	2045	2067	2056	-31.70	-23.46	0.74006309148265	13.5	1-4,2067-2064;8-20,2058-2046	5-7,2063-2059[AILt];21-21,2045-2045[UP3]	.(((((((((((((.....((((&))))--...))))))))))))).	AGAGCAGGGAGAGACGCUCUGUC&GAUA--AUAUCUUUCCCUGUUCA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN21276_c0_g2_2056_TPlot.pdf
TRINITY_DN21276_c0_g2:4878	si_a139	TRINITY_DN21276_c0_g2	4867	4887	4878	-25.90	-17.20	0.664092664092664	8	1-2,4887-4886;4-9,4884-4879;11-21,4877-4867	3-3,4885-4885[SIL];10-10,4878-4878[SIL]	(((((((((((.((((((.((&)).)))))).)))))))))))	AAGCAGCGGCGUUUGGUUUCU&AGUAAUUAAUCGUUGUUGUUU	3	0.999889416257926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN21276_c0_g2_4878_TPlot.pdf
TRINITY_DN21281_c0_g1:3163	si_s88	TRINITY_DN21281_c0_g1	3151	3173	3163	-34.80	-22.90	0.658045977011494	8	1-6,3173-3168;7-12,3166-3161;13-13,3159-3159;16-21,3156-3151	x-x,3167-3167[BULt];x-x,3160-3160[BULt];14-15,3158-3157[SIL]	((((((..(.((((((.((((((&))))))-))))))-)..))))))	GAAGCGCUGAAAGGAGAAGAGGA&UCCUUU-CUUCUU-CUUCGCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN21281_c0_g1_3163_TPlot.pdf
TRINITY_DN21281_c0_g1:3168	si_s77	TRINITY_DN21281_c0_g1	3156	3177	3168	-25.50	-18.10	0.709803921568627	9	1-10,3177-3168;11-18,3166-3159	x-x,3167-3167[BULt];19-21,3158-3156[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	GCUGAAAGGAGAAGAGGAAGAA&UUUUUUUUCU-UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN21281_c0_g1_3168_TPlot.pdf
TRINITY_DN21281_c0_g1:3246	si_s89	TRINITY_DN21281_c0_g1	3228	3256	3246	-35.30	-24.60	0.696883852691218	11.5	1-5,3256-3252;6-13,3250-3243;14-21,3235-3228	x-x,3251-3251[BULt];x-x,3242-3236[BULt]	((((((((.......((((((((.(((((&)))))-))))))))-------))))))))	UGAAGCGAUUCCCACAGAAGGAGAAGAGG&CCUUU-CUUCUUCU-------UCGCUUCG	2	0.999968566676748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN21281_c0_g1_3246_TPlot.pdf
TRINITY_DN21281_c0_g1:3247	si_s88	TRINITY_DN21281_c0_g1	3229	3257	3247	-34.80	-25.50	0.732758620689655	11	1-6,3257-3252;7-14,3250-3243;15-21,3235-3229	x-x,3251-3251[BULt];x-x,3242-3236[BULt]	(((((((.......((((((((.((((((&))))))-))))))))-------)))))))	GAAGCGAUUCCCACAGAAGGAGAAGAGGA&UCCUUU-CUUCUUCU-------UCGCUUC	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN21281_c0_g1_3247_TPlot.pdf
TRINITY_DN21293_c0_g1:3038	si_s630	TRINITY_DN21293_c0_g1	3028	3048	3038	-35.60	-23.80	0.668539325842697	9.5	1-3,3048-3046;4-13,3044-3035;15-21,3034-3028	x-x,3045-3045[BULt];14-14,x-x[BULq]	(((((((-((((((((((.(((&)))-)))))))))).)))))))	GCGGGCG-CUGCGGGGGGUAUC&GAU-CUUUUCGUAGGCGUUUGC	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN21293_c0_g1_3038_TPlot.pdf
TRINITY_DN21293_c0_g1:3045	si_a734	TRINITY_DN21293_c0_g1	3034	3056	3045	-42.40	-29.70	0.700471698113208	10.5	1-8,3056-3049;9-15,3046-3040;17-18,3038-3037	x-x,3048-3047[BULt];16-16,3039-3039[SIL];19-21,3036-3034[UP3]	...((.(((((((..((((((((&))))))))--))))))).))...	GCUGCGGGGGGUAUCGAGGUGCC&GGCAUCUU--UACCCCUGGCCAU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN21293_c0_g1_3045_TPlot.pdf
TRINITY_DN21293_c0_g1:3053	si_a728	TRINITY_DN21293_c0_g1	3040	3064	3053	-40.30	-26.60	0.660049627791563	12	3-6,3062-3059;7-14,3056-3049;15-21,3046-3040	1-2,3064-3063[UP5];x-x,3058-3057[BULt];x-x,3048-3047[BULt]	(((((((..((((((((..((((..&..))))--))))))))--)))))))	GGGGGUAUCGAGGUGCCGCUGAGCU&UACUCG--GGCAUCUU--UACCCCU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN21293_c0_g1_3053_TPlot.pdf
TRINITY_DN21293_c0_g1:3204	si_a49	TRINITY_DN21293_c0_g1	3193	3214	3204	-42.20	-28.92	0.685308056872038	11	2-5,3213-3210;9-21,3205-3193	1-1,3214-3214[UP5];6-8,3209-3206[AILt]	(((((((((((((....((((.&.))))-...)))))))))))))	AGCGGGUUGGCUCAUCUGACCG&AGGUC-UAGGAGUCGACUCGCU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a49_TRINITY_DN21293_c0_g1_3204_TPlot.pdf
TRINITY_DN21293_c0_g1:3205	si_a48	TRINITY_DN21293_c0_g1	3194	3215	3205	-41.90	-27.72	0.661575178997613	12.5	3-6,3213-3210;10-21,3205-3194	1-2,3215-3214[UP5];7-9,3209-3206[AILt]	((((((((((((....((((..&..))))-...))))))))))))	GCGGGUUGGCUCAUCUGACCGA&UAGGUC-UAGGAGUCGACUCGC	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a48_TRINITY_DN21293_c0_g1_3205_TPlot.pdf
TRINITY_DN21293_c0_g1:3561	si_a505	TRINITY_DN21293_c0_g1	3549	3570	3561	-33.30	-23.00	0.690690690690691	8.5	1-10,3570-3561;11-17,3559-3553;19-20,3551-3550	x-x,3560-3560[BULt];18-18,3552-3552[SIL];21-21,3549-3549[UP3]	.((.(((((((.((((((((((&))))))))))-))))))).)).	CGCCUUCCGGGCGGAGACGGAG&UUUCGUCUUC-CUUGGAAUGUA	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN21293_c0_g1_3561_TPlot.pdf
TRINITY_DN21293_c0_g1:3562	si_a504	TRINITY_DN21293_c0_g1	3550	3571	3562	-32.90	-23.20	0.70516717325228	8.5	2-11,3570-3561;12-18,3559-3553;20-21,3551-3550	1-1,3571-3571[UP5];x-x,3560-3560[BULt];19-19,3552-3552[SIL]	((.(((((((.((((((((((.&.))))))))))-))))))).))	GCCUUCCGGGCGGAGACGGAGG&UUUUCGUCUUC-CUUGGAAUGU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN21293_c0_g1_3562_TPlot.pdf
TRINITY_DN21293_c0_g1:3563	si_a503	TRINITY_DN21293_c0_g1	3551	3572	3563	-32.10	-23.70	0.738317757009346	9	1-12,3572-3561;13-19,3559-3553	x-x,3560-3560[BULt];20-21,3552-3551[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	CCUUCCGGGCGGAGACGGAGGA&UUUUUCGUCUUC-CUUGGAAUG	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN21293_c0_g1_3563_TPlot.pdf
TRINITY_DN2130_c0_g1:468	si_a600	TRINITY_DN2130_c0_g1	457	477	468	-29.70	-21.40	0.72053872053872	6	2-9,476-469;11-20,467-458	1-1,477-477[UP5];10-10,468-468[SIL];21-21,457-457[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UUUGGAAUUGCUGGAAUUCUC&CAGAAUUUUCGCAAUUCCAAU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN2130_c0_g1_468_TPlot.pdf
TRINITY_DN2131_c0_g1:1759	si_s158	TRINITY_DN2131_c0_g1	1747	1765	1759	-44.90	-29.20	0.650334075723831	9.5	1-6,1765-1760;10-13,1759-1756;14-20,1754-1748	7-9,x-x[BULq];x-x,1755-1755[BULt];21-21,1747-1747[UP3]	.(((((((.((((---((((((&))))))...))))-))))))).	AACCCCUGCGCCA---GCCUCU&GGAGGUUCAUGGC-CAGGGGUA	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN2131_c0_g1_1759_TPlot.pdf
TRINITY_DN2131_c0_g1:1821	si_a407	TRINITY_DN2131_c0_g1	1810	1830	1821	-19.80	-13.70	0.691919191919192	7	1-8,1830-1823;10-19,1821-1812	9-9,1822-1822[SIL];20-21,1811-1810[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AAUUGAAUGUAAUCAGAAUAA&UUGUUUUGUUUAUAUUUAAAU	4	0.999999999982171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2131_c0_g1_1821_TPlot.pdf
TRINITY_DN2132_c0_g2:1667	si_a207	TRINITY_DN2132_c0_g2	1653	1676	1667	-23.90	-16.40	0.686192468619247	11	1-12,1676-1665;16-21,1658-1653	13-15,1664-1659[AILt]	((((((......((((((((((((&))))))))))))---...))))))	GUUUGGGUUUUUGUCGAUUUGUUA&UAAUAAAUCGAC---UAAUUAAAC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a207_TRINITY_DN2132_c0_g2_1667_TPlot.pdf
TRINITY_DN2132_c0_g2:584	si_a323	TRINITY_DN2132_c0_g2	572	593	584	-26.80	-22.20	0.828358208955224	5.5	1-17,593-577;18-21,575-572	x-x,576-576[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	GAGGUGAUGAAGAAGUUAUGGA&UCCAUGAUUUUUUUAUU-CCUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN2132_c0_g2_584_TPlot.pdf
TRINITY_DN2132_c0_g2:589	si_a318	TRINITY_DN2132_c0_g2	578	598	589	-22.50	-16.70	0.742222222222222	11.5	6-21,593-578	1-5,598-594[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGAAGAAGUUAUGGAAAGGA&AUUUAUCCAUGAUUUUUUUAU	3	0.999369353721816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2132_c0_g2_589_TPlot.pdf
TRINITY_DN2133_c0_g1:1131	si_a779	TRINITY_DN2133_c0_g1	1119	1143	1131	-27.00	-17.90	0.662962962962963	10	2-5,1142-1139;6-19,1135-1122;20-21,1120-1119	1-1,1143-1143[UP5];x-x,1138-1136[BULt];x-x,1121-1121[BULt]	((.((((((((((((((...((((.&.))))---))))))))))))))-))	GGUAGAAAUAGGAGAGUCAGUGAAG&AUUCA---ACUCUUCUAUUUUU-CU	3	0.999999326777845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN2133_c0_g1_1131_TPlot.pdf
TRINITY_DN21340_c0_g1:190	si_a818	TRINITY_DN21340_c0_g1	179	200	190	-28.90	-19.20	0.664359861591695	5	1-6,200-195;7-17,193-183;19-20,181-180	x-x,194-194[BULt];18-18,182-182[SIL];21-21,179-179[UP3]	.((.(((((((((((.((((((&))))))-))))))))))).)).	CUUGUUUCCUUUUUUCCUUCUU&AAGAAG-AAGAAAGGAAAGAAA	0	0.155575878230679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN21340_c0_g1_190_TPlot.pdf
TRINITY_DN21341_c0_g1:279	si_s381	TRINITY_DN21341_c0_g1	268	288	279	-40.30	-26.50	0.6575682382134	7.5	1-10,288-279;11-13,277-275;16-20,273-269	x-x,278-278[BULt];14-15,274-274[AILq];21-21,268-268[UP3]	.(((((.-(((.((((((((((&))))))))))-)))..))))).	AAAUGUU-GGCAGGGCGCGCGG&UCGCGUGUCC-GCCUUACAUUC	1	0.0403130197777601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s381_TRINITY_DN21341_c0_g1_279_TPlot.pdf
TRINITY_DN21341_c0_g1:340	si_s362	TRINITY_DN21341_c0_g1	325	353	340	-34.70	-22.70	0.654178674351585	18	1-7,353-347;8-10,342-340;11-21,335-325	x-x,346-343[BULt];x-x,339-336[BULt]	(((((((((((....(((....(((((((&)))))))----)))----)))))))))))	GAGCGAUCGGUGUGUUCAAGAAAUUUGUU&AAUAGAU----UGA----ACCGAUCGCUC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN21341_c0_g1_340_TPlot.pdf
TRINITY_DN21346_c0_g1:1690	si_a116	TRINITY_DN21346_c0_g1	1679	1699	1690	-31.10	-21.40	0.688102893890675	12.5	7-21,1693-1679	1-6,1699-1694[UP5]	(((((((((((((((......&......)))))))))))))))	UGCUGUAGGACAAGCCACUAC&AUACGAGCUUGUUUUAUAGCA	1	0.0348589330840038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN21346_c0_g1_1690_TPlot.pdf
TRINITY_DN2134_c0_g1:1652	si_s317	TRINITY_DN2134_c0_g1	1636	1661	1652	-33.10	-21.88	0.661027190332326	15	1-12,1661-1650;16-21,1641-1636	13-15,1649-1642[AILt]	((((((........((((((((((((&))))))))))))-----...))))))	GUUUGUCGUUUUGAAGGAAGGGCAGA&UCUGUCCUUCUU-----GUUACAAAC	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN2134_c0_g1_1652_TPlot.pdf
TRINITY_DN2136_c0_g1:1407	si_a96	TRINITY_DN2136_c0_g1	1396	1416	1407	-27.90	-19.00	0.681003584229391	12	4-8,1413-1409;11-19,1406-1398	1-3,1416-1414[UP5];9-10,1408-1407[SIL];20-21,1397-1396[UP3]	..(((((((((..(((((...&...)))))..)))))))))..	CGUUAUCUUCGGUGCCUUGAU&GAAAAGGUAACGAAGAUAAAA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a96_TRINITY_DN2136_c0_g1_1407_TPlot.pdf
TRINITY_DN2136_c0_g1:1486	si_s72	TRINITY_DN2136_c0_g1	1475	1498	1486	-24.10	-17.92	0.74356846473029	13.5	1-7,1498-1492;10-21,1486-1475	8-9,1491-1487[AILt]	((((((((((((.....(((((((&)))))))---..))))))))))))	GAGGAGAGGAAAUUAGCGAUGGAA&UUCUAUU---UUUUUUCUUUCCUU	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2136_c0_g1_1486_TPlot.pdf
TRINITY_DN2136_c0_g1:1487	si_s71	TRINITY_DN2136_c0_g1	1476	1499	1487	-25.70	-16.82	0.654474708171206	14	2-8,1498-1492;11-21,1486-1476	1-1,1499-1499[UP5];9-10,1491-1487[AILt]	(((((((((((.....(((((((.&.)))))))---..)))))))))))	AGGAGAGGAAAUUAGCGAUGGAAC&CUUCUAUU---UUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2136_c0_g1_1487_TPlot.pdf
TRINITY_DN2136_c0_g1:1548	si_a794	TRINITY_DN2136_c0_g1	1537	1557	1548	-28.60	-20.20	0.706293706293706	8	1-9,1557-1549;11-13,1547-1545;15-19,1543-1539	10-10,1548-1548[SIL];14-14,1544-1544[SIL];20-21,1538-1537[UP3]	..(((((.(((.(((((((((&))))))))).))).)))))..	ACCGGAUGGGACGAUGGAGAA&UUUUCUAUUUUCCAAUCCGAA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN2136_c0_g1_1548_TPlot.pdf
TRINITY_DN2136_c0_g1:1550	si_a792	TRINITY_DN2136_c0_g1	1539	1559	1550	-27.60	-19.60	0.710144927536232	9	3-11,1557-1549;13-15,1547-1545;17-21,1543-1539	1-2,1559-1558[UP5];12-12,1548-1548[SIL];16-16,1544-1544[SIL]	(((((.(((.(((((((((..&..))))))))).))).)))))	CGGAUGGGACGAUGGAGAAGA&AUUUUUCUAUUUUCCAAUCCG	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2136_c0_g1_1550_TPlot.pdf
TRINITY_DN2136_c0_g1:1777	si_a633	TRINITY_DN2136_c0_g1	1765	1787	1777	-26.40	-17.80	0.674242424242424	8.5	1-8,1787-1780;9-15,1778-1772;16-20,1770-1766	x-x,1779-1779[BULt];x-x,1771-1771[BULt];21-21,1765-1765[UP3]	.(((((.(((((((.((((((((&))))))))-)))))))-))))).	CGCUCGUAAAGAAUCCGACGUGG&UUAUGUCG-AUUUUUU-UGAGUA	3	0.999999935685347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2136_c0_g1_1777_TPlot.pdf
TRINITY_DN2136_c0_g1:1778	si_a632	TRINITY_DN2136_c0_g1	1766	1788	1778	-26.10	-17.60	0.674329501915709	8.5	2-9,1787-1780;10-16,1778-1772;17-21,1770-1766	1-1,1788-1788[UP5];x-x,1779-1779[BULt];x-x,1771-1771[BULt]	(((((.(((((((.((((((((.&.))))))))-)))))))-)))))	GCUCGUAAAGAAUCCGACGUGGG&AUUAUGUCG-AUUUUUU-UGAGU	3	0.99999899076026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2136_c0_g1_1778_TPlot.pdf
TRINITY_DN2136_c0_g1:2017	si_a499	TRINITY_DN2136_c0_g1	2006	2026	2017	-35.20	-25.40	0.721590909090909	6.5	1-10,2026-2017;12-19,2015-2008	11-11,2016-2016[SIL];20-21,2007-2006[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AUGAGGAAGAAGAGGAACGAC&GUCGUUUUUCGUCUUCCUUGG	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN2136_c0_g1_2017_TPlot.pdf
TRINITY_DN2136_c0_g1:2018	si_a498	TRINITY_DN2136_c0_g1	2007	2027	2018	-33.50	-25.60	0.764179104477612	6.5	2-11,2026-2017;13-20,2015-2008	1-1,2027-2027[UP5];12-12,2016-2016[SIL];21-21,2007-2007[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UGAGGAAGAAGAGGAACGACU&UGUCGUUUUUCGUCUUCCUUG	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2136_c0_g1_2018_TPlot.pdf
TRINITY_DN2136_c0_g1:2019	si_a497	TRINITY_DN2136_c0_g1	2008	2028	2019	-32.00	-25.30	0.790625	6.5	3-12,2026-2017;14-21,2015-2008	1-2,2028-2027[UP5];13-13,2016-2016[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GAGGAAGAAGAGGAACGACUC&AUGUCGUUUUUCGUCUUCCUU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2136_c0_g1_2019_TPlot.pdf
TRINITY_DN2136_c0_g1:202	si_s675	TRINITY_DN2136_c0_g1	187	211	202	-27.50	-18.90	0.687272727272727	13	2-12,210-200;13-18,195-190;20-21,188-187	1-1,211-211[UP5];x-x,199-196[BULt];19-19,189-189[SIL]	((.((((((....(((((((((((.&.)))))))))))----)))))).))	GAGUCGUGUAAUUUUCUGUGAUCAU&UUGAUUAUAGAA----ACAUGAGUU	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN2136_c0_g1_202_TPlot.pdf
TRINITY_DN2136_c0_g1:2021	si_a495	TRINITY_DN2136_c0_g1	2010	2030	2021	-31.90	-22.90	0.717868338557994	10	5-14,2026-2017;16-21,2015-2010	1-4,2030-2027[UP5];15-15,2016-2016[SIL]	((((((.((((((((((....&....)))))))))).))))))	GGAAGAAGAGGAACGACUCAA&AUAUGUCGUUUUUCGUCUUCC	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN2136_c0_g1_2021_TPlot.pdf
TRINITY_DN2136_c0_g1:2022	si_a494	TRINITY_DN2136_c0_g1	2011	2031	2022	-29.50	-19.60	0.664406779661017	11.5	6-15,2026-2017;17-21,2015-2011	1-5,2031-2027[UP5];16-16,2016-2016[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GAAGAAGAGGAACGACUCAAC&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999993701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2136_c0_g1_2022_TPlot.pdf
TRINITY_DN2136_c0_g1:2460	si_a545	TRINITY_DN2136_c0_g1	2449	2470	2460	-28.10	-18.30	0.651245551601424	8	1-2,2470-2469;4-9,2467-2462;10-19,2460-2451	3-3,2468-2468[SIL];x-x,2461-2461[BULt];20-21,2450-2449[UP3]	..((((((((((.((((((.((&)).))))))-))))))))))..	GAAAAGGGAUGGAAUUGAAGCG&CGGUUCAAU-CUAUUUCUUUAU	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN2136_c0_g1_2460_TPlot.pdf
TRINITY_DN2136_c0_g1:2657	si_a94	TRINITY_DN2136_c0_g1	2646	2667	2657	-28.60	-18.70	0.653846153846154	6.5	1-7,2667-2661;8-14,2659-2653;17-20,2650-2647	x-x,2660-2660[BULt];15-16,2652-2651[SIL];21-21,2646-2646[UP3]	.((((..(((((((.(((((((&)))))))-)))))))..)))).	AUGUCACCGUUGCCAUUUUCUU&AAGAAAA-GGUAACGAAGAUAA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN2136_c0_g1_2657_TPlot.pdf
TRINITY_DN2136_c0_g1:2727	si_a34	TRINITY_DN2136_c0_g1	2716	2736	2727	-38.10	-28.00	0.73490813648294	7	2-8,2735-2729;11-21,2726-2716	1-1,2736-2736[UP5];9-10,2728-2727[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	GGAUCUGCUGGGAUUAGAACG&AGUUCUAAGACCGGUAGGUCU	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a34_TRINITY_DN2136_c0_g1_2727_TPlot.pdf
TRINITY_DN2136_c0_g1:2873	si_a526	TRINITY_DN2136_c0_g1	2861	2882	2873	-45.60	-35.70	0.782894736842105	5.5	2-11,2881-2872;12-20,2870-2862	1-1,2882-2882[UP5];x-x,2871-2871[BULt];21-21,2861-2861[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	GGGUUGUUCGCCGUGUCCGCCG&AGGCGGACACG-CGAGCGAUCG	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN2136_c0_g1_2873_TPlot.pdf
TRINITY_DN2136_c0_g1:2874	si_a525	TRINITY_DN2136_c0_g1	2862	2883	2874	-44.10	-35.10	0.795918367346939	6.5	3-12,2881-2872;13-21,2870-2862	1-2,2883-2882[UP5];x-x,2871-2871[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GGUUGUUCGCCGUGUCCGCCGU&AAGGCGGACACG-CGAGCGAUC	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a525_TRINITY_DN2136_c0_g1_2874_TPlot.pdf
TRINITY_DN2136_c0_g1:2875	si_a524	TRINITY_DN2136_c0_g1	2863	2884	2875	-42.50	-32.80	0.771764705882353	7.5	4-13,2881-2872;14-21,2870-2863	1-3,2884-2882[UP5];x-x,2871-2871[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GUUGUUCGCCGUGUCCGCCGUC&UAAGGCGGACACG-CGAGCGAU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a524_TRINITY_DN2136_c0_g1_2875_TPlot.pdf
TRINITY_DN2136_c0_g1:2982	si_s808	TRINITY_DN2136_c0_g1	2971	2992	2982	-28.60	-19.40	0.678321678321678	11	2-9,2991-2984;11-17,2981-2975	1-1,2992-2992[UP5];10-10,2983-2982[AILt];18-21,2974-2971[UP3]	....(((((((..((((((((.&.))))))))-.)))))))....	AGACGAGGAGGAGGACGAAGAC&AUCUUCGUU-ACCUUUUCUUAA	4	0.999999986546025	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2136_c0_g1_2982_TPlot.pdf
TRINITY_DN2136_c0_g1:2984	si_s807	TRINITY_DN2136_c0_g1	2972	2993	2984	-28.90	-19.40	0.671280276816609	12	3-10,2991-2984;12-18,2981-2975	1-2,2993-2992[UP5];11-11,2983-2982[AILt];19-21,2974-2972[UP3]	...(((((((..((((((((..&..))))))))-.)))))))...	GACGAGGAGGAGGACGAAGACG&UAUCUUCGUU-ACCUUUUCUUA	4	0.999999998220516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2136_c0_g1_2984_TPlot.pdf
TRINITY_DN2136_c0_g1:2985	si_s806	TRINITY_DN2136_c0_g1	2973	2994	2985	-28.60	-19.40	0.678321678321678	13	4-11,2991-2984;13-19,2981-2975	1-3,2994-2992[UP5];12-12,2983-2982[AILt];20-21,2974-2973[UP3]	..(((((((..((((((((...&...))))))))-.)))))))..	ACGAGGAGGAGGACGAAGACGA&UUAUCUUCGUU-ACCUUUUCUU	4	0.999999993331237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2136_c0_g1_2985_TPlot.pdf
TRINITY_DN2136_c0_g1:2986	si_a500	TRINITY_DN2136_c0_g1	2975	2994	2986	-34.40	-23.70	0.688953488372093	7	1-7,2994-2988;9-18,2987-2978	8-8,x-x[BULq];19-21,2977-2975[UP3]	...((((((((((-(((((((&))))))).))))))))))...	GAGGAGGAGGACG-AAGACGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999974255652604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2136_c0_g1_2986_TPlot.pdf
TRINITY_DN2136_c0_g1:2989	si_a496	TRINITY_DN2136_c0_g1	2979	2998	2989	-32.40	-22.30	0.688271604938272	10.5	5-11,2994-2988;13-21,2987-2979	1-4,2998-2995[UP5];12-12,x-x[BULq]	(((((((((-(((((((....&....))))))).)))))))))	AGGAGGACG-AAGACGAGCCG&UAUGUCGUUUUUCGUCUUCCU	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN2136_c0_g1_2989_TPlot.pdf
TRINITY_DN21370_c0_g2:112	si_s75	TRINITY_DN21370_c0_g2	101	121	112	-24.00	-15.90	0.6625	7	3-10,119-112;12-20,110-102	1-2,121-120[UP5];11-11,111-111[SIL];21-21,101-101[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CGAAAGGAAAAAAAAAAGAAG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN21370_c0_g2_112_TPlot.pdf
TRINITY_DN21370_c0_g2:115	si_s68	TRINITY_DN21370_c0_g2	104	124	115	-23.10	-15.10	0.653679653679654	7.5	4-8,121-117;10-21,115-104	1-3,124-122[UP5];9-9,116-116[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAGGAAAAAAAAAAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN21370_c0_g2_115_TPlot.pdf
TRINITY_DN21376_c0_g1:155	si_s69	TRINITY_DN21376_c0_g1	144	173	155	-23.40	-16.90	0.722222222222222	20	2-8,172-166;9-21,156-144	1-1,173-173[UP5];x-x,165-157[BULt]	(((((((((((((.........(((((((.&.)))))))---------)))))))))))))	GAAAGAAAAAGAAAUCUUCUUUUAGAAGUA&AACUUCUA---------UUUUUUUUCUUUC	4	0.999999999999371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN21376_c0_g1_155_TPlot.pdf
TRINITY_DN2137_c0_g1:1093	si_s826	TRINITY_DN2137_c0_g1	1084	1102	1093	-22.20	-15.90	0.716216216216216	4	1-15,1102-1088;18-20,1087-1085	16-17,x-x[BULq];21-21,1084-1084[UP3]	.(((--(((((((((((((((&)))))))))))))))..))).	CCAA--UGUUUUUCAUUGUUA&UAAUAAUGAAAAACAAUUUGA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s826_TRINITY_DN2137_c0_g1_1093_TPlot.pdf
TRINITY_DN2137_c0_g1:1094	si_s825	TRINITY_DN2137_c0_g1	1083	1103	1094	-21.30	-15.90	0.746478873239437	6.5	1-16,1103-1088	17-21,1087-1083[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCCAAUGUUUUUCAUUGUUAG&UUAAUAAUGAAAAACAAUUUG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN2137_c0_g1_1094_TPlot.pdf
TRINITY_DN2137_c0_g1:1097	si_s822	TRINITY_DN2137_c0_g1	1086	1106	1097	-22.30	-16.10	0.721973094170404	9	4-19,1103-1088	1-3,1106-1104[UP5];20-21,1087-1086[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAUGUUUUUCAUUGUUAGUUU&UUCUUAAUAAUGAAAAACAAU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN2137_c0_g1_1097_TPlot.pdf
TRINITY_DN2137_c0_g1:1099	si_s820	TRINITY_DN2137_c0_g1	1088	1108	1099	-22.10	-15.90	0.719457013574661	11	6-21,1103-1088	1-5,1108-1104[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGUUUUUCAUUGUUAGUUUAA&UUUUCUUAAUAAUGAAAAACA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN2137_c0_g1_1099_TPlot.pdf
TRINITY_DN2137_c0_g1:1391	si_a639	TRINITY_DN2137_c0_g1	1380	1400	1391	-23.60	-16.10	0.682203389830509	7	1-7,1400-1394;9-14,1392-1387;16-19,1385-1382	8-8,1393-1393[SIL];15-15,1386-1386[SIL];20-21,1381-1380[UP3]	..((((.((((((.(((((((&))))))).)))))).))))..	CAGUGUCACUCAAUGAAAUCG&CGAUUUUUUUGAGUAAUAUAU	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN2137_c0_g1_1391_TPlot.pdf
TRINITY_DN2137_c0_g1:1393	si_a637	TRINITY_DN2137_c0_g1	1382	1402	1393	-25.80	-16.90	0.655038759689922	7	1-1,1402-1402;3-9,1400-1394;11-16,1392-1387;18-21,1385-1382	2-2,1401-1401[SIL];10-10,1393-1393[SIL];17-17,1386-1386[SIL]	((((.((((((.(((((((.(&).))))))).)))))).))))	GUGUCACUCAAUGAAAUCGUC&GUCGAUUUUUUUGAGUAAUAU	3	0.999999999976039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2137_c0_g1_1393_TPlot.pdf
TRINITY_DN21380_c0_g1:296	si_s78	TRINITY_DN21380_c0_g1	286	305	296	-26.20	-21.70	0.82824427480916	6	1-13,305-293;16-21,291-286	14-15,292-292[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	AGAAGAU-GGAGAGAGAGAGA&UUUUUUUCUUUCCUUUCUUCU	0	0.156842316244609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN21380_c0_g1_296_TPlot.pdf
TRINITY_DN21380_c0_g1:297	si_s84	TRINITY_DN21380_c0_g1	286	307	297	-32.30	-24.20	0.74922600619195	6.5	1-6,307-302;7-14,300-293;16-20,291-287	x-x,301-301[BULt];15-15,292-292[SIL];21-21,286-286[UP3]	.(((((.((((((((.((((((&))))))-)))))))).))))).	AGAAGAUGGAGAGAGAGAGAGA&UCUUUC-CUUUCUUCUUCUUCG	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN21380_c0_g1_297_TPlot.pdf
TRINITY_DN21380_c0_g1:298	si_a785	TRINITY_DN21380_c0_g1	287	308	298	-25.90	-19.90	0.768339768339768	7	1-4,308-305;5-7,303-301;9-21,299-287	x-x,304-304[BULt];8-8,300-300[SIL]	(((((((((((((.(((.((((&))))-))).)))))))))))))	GAAGAUGGAGAGAGAGAGAGAG&CUCU-UCUAUUUUUCUAUUUUC	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN21380_c0_g1_298_TPlot.pdf
TRINITY_DN2138_c0_g1:1582	si_a559	TRINITY_DN2138_c0_g1	1571	1590	1582	-36.80	-26.80	0.728260869565218	6	1-5,1590-1586;7-18,1585-1574	6-6,x-x[BULq];19-21,1573-1571[UP3]	...((((((((((((-(((((&))))).))))))))))))...	UAUUUCACGGGGAGA-GAAGA&UCUUUAUCUCCCCGUGAAUCG	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN2138_c0_g1_1582_TPlot.pdf
TRINITY_DN2138_c0_g1:1586	si_a555	TRINITY_DN2138_c0_g1	1575	1594	1586	-33.70	-26.60	0.789317507418398	8	4-9,1591-1586;11-21,1585-1575	1-3,1594-1592[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	UCACGGGGAGA-GAAGAACCA&UAUUUCUUUAUCUCCCCGUGA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN2138_c0_g1_1586_TPlot.pdf
TRINITY_DN213_c0_g1:143	si_s77	TRINITY_DN213_c0_g1	132	152	143	-25.50	-16.60	0.650980392156863	8.5	3-17,150-136	1-2,152-151[UP5];18-21,135-132[UP3]	....(((((((((((((((..&..)))))))))))))))....	AGCAAAGGGAAAGAAGAAAUA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN213_c0_g1_143_TPlot.pdf
TRINITY_DN213_c0_g1:144	si_s76	TRINITY_DN213_c0_g1	133	153	144	-23.60	-16.60	0.703389830508475	9.5	4-18,150-136	1-3,153-151[UP5];19-21,135-133[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCAAAGGGAAAGAAGAAAUAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN213_c0_g1_144_TPlot.pdf
TRINITY_DN213_c0_g1:147	si_s73	TRINITY_DN213_c0_g1	136	157	147	-24.00	-16.80	0.7	8.5	2-4,156-154;7-21,150-136	1-1,157-157[UP5];5-6,153-151[AILt]	(((((((((((((((...(((.&.)))-..)))))))))))))))	AAGGGAAAGAAGAAAUAUUAGC&UCUA-UUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN213_c0_g1_147_TPlot.pdf
TRINITY_DN213_c0_g1:148	si_s72	TRINITY_DN213_c0_g1	137	158	148	-24.10	-15.90	0.659751037344398	10.5	3-5,156-154;8-21,150-137	1-2,158-157[UP5];6-7,153-151[AILt]	((((((((((((((...(((..&..)))-..))))))))))))))	AGGGAAAGAAGAAAUAUUAGCG&UUCUA-UUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN213_c0_g1_148_TPlot.pdf
TRINITY_DN213_c0_g1:261	si_a474	TRINITY_DN213_c0_g1	250	269	261	-23.60	-15.90	0.673728813559322	4	1-5,269-265;7-12,264-259;14-21,257-250	6-6,x-x[BULq];13-13,258-258[SIL]	((((((((.((((((-(((((&))))).)))))).))))))))	UCUAUAUAUCGAUAA-UACAU&AUGUAAUUAUUGUUAUAUAGA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN213_c0_g1_261_TPlot.pdf
TRINITY_DN21405_c0_g1:91	si_a454	TRINITY_DN21405_c0_g1	80	100	91	-21.30	-14.90	0.699530516431925	12	6-20,95-81	1-5,100-96[UP5];21-21,80-80[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUUAUGUAUAAUAACUGUCA&UAAUUGUUGUUAUAUAUAAUA	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN21405_c0_g1_91_TPlot.pdf
TRINITY_DN21419_c0_g1:98	si_a627	TRINITY_DN21419_c0_g1	87	114	98	-29.50	-20.30	0.688135593220339	20	1-8,114-107;9-17,99-91	x-x,106-100[BULt];18-21,90-87[UP3]	....(((((((((.......((((((((&))))))))-------)))))))))....	GAUCGGUCGACGUCGCGAAGAAUACGCC&GGCGUAUU-------AUGUCGAUUUUUU	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN21419_c0_g1_98_TPlot.pdf
TRINITY_DN2141_c0_g1:2281	si_a447	TRINITY_DN2141_c0_g1	2268	2290	2281	-25.70	-17.30	0.673151750972763	6.5	1-10,2290-2281;13-16,2278-2275;17-21,2272-2268	11-12,2280-2279[SIL];x-x,2274-2273[BULt]	(((((..((((..((((((((((&))))))))))..))))--)))))	UGUAAGUCAACUUUUAUCUCAUA&UAUGAGAUAAUUGUUG--UUAUA	2	0.97609923111979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN2141_c0_g1_2281_TPlot.pdf
TRINITY_DN21424_c0_g1:654	si_a792	TRINITY_DN21424_c0_g1	640	663	654	-27.60	-18.50	0.670289855072464	11	1-12,663-652;13-16,648-645;18-20,643-641	x-x,651-649[BULt];17-17,644-644[SIL];21-21,640-640[UP3]	.(((.((((...((((((((((((&))))))))))))---)))).))).	GGGAAUGGAGAAGAAUGGAAGAAU&AUUUUUCUAUUU---UCCAAUCCG	2	0.998733041046006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN21424_c0_g1_654_TPlot.pdf
TRINITY_DN2142_c0_g1:623	si_s68	TRINITY_DN2142_c0_g1	612	630	623	-23.10	-15.38	0.665800865800866	8.5	1-7,630-624;12-21,621-612	8-11,623-622[AILq]	((((((((((..--(((((((&)))))))....))))))))))	GAAGAAAAAACU--GAAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2142_c0_g1_623_TPlot.pdf
TRINITY_DN2142_c0_g1:631	si_s899	TRINITY_DN2142_c0_g1	620	639	631	-28.30	-19.60	0.692579505300353	7.5	1-5,639-635;7-18,634-623	6-6,x-x[BULq];19-21,622-620[UP3]	...((((((((((((-(((((&))))).))))))))))))...	AACUGAAGUUGAGGA-AGAGC&GCUUUCUCUUCAAUUUCAAUU	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2142_c0_g1_631_TPlot.pdf
TRINITY_DN21449_c0_g1:651	si_s102	TRINITY_DN21449_c0_g1	636	660	651	-34.10	-24.50	0.718475073313783	7.5	1-10,660-651;11-16,648-643;18-21,639-636	x-x,650-649[BULt];17-17,642-640[AILt]	((((...((((((..((((((((((&))))))))))--))))))--.))))	CUGUGUGUUCCAAAUUCCGAAGCGA&UCGCUUCGGA--UUGGAA--AAUAG	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN21449_c0_g1_651_TPlot.pdf
TRINITY_DN21449_c0_g1:657	si_s96	TRINITY_DN21449_c0_g1	644	666	657	-37.20	-26.30	0.706989247311828	6	1-4,666-663;7-16,660-651;17-21,648-644	5-6,662-661[SIL];x-x,650-649[BULt]	(((((..((((((((((..((((&))))..))))))))))--)))))	UCCAAAUUCCGAAGCGACAAAGA&UCUUCUUCGCUUCGGA--UUGGA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN21449_c0_g1_657_TPlot.pdf
TRINITY_DN2144_c0_g1:1082	si_a763	TRINITY_DN2144_c0_g1	1071	1091	1082	-28.80	-19.40	0.673611111111111	8	1-10,1091-1082;11-12,1080-1079;14-20,1078-1072	x-x,1081-1081[BULt];13-13,x-x[BULq];21-21,1071-1071[UP3]	.(((((((-((.((((((((((&))))))))))-)).))))))).	CGAGUCGA-CACGAAACCCGGA&UUUGGGUUUU-UGAUUGAUUCA	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2144_c0_g1_1082_TPlot.pdf
TRINITY_DN2145_c0_g1:1761	si_s807	TRINITY_DN2145_c0_g1	1750	1771	1761	-28.90	-19.70	0.681660899653979	8	1-6,1771-1766;7-7,1764-1764;9-20,1762-1751	x-x,1765-1765[BULt];8-8,1763-1763[SIL];21-21,1750-1750[UP3]	.((((((((((((.(.((((((&))))))-).)))))))))))).	GGAGAAGAGGUGAAGCAAGGUA&UAUCUU-CGUUACCUUUUCUUA	4	0.999999866969761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2145_c0_g1_1761_TPlot.pdf
TRINITY_DN21465_c0_g1:1948	si_a465	TRINITY_DN21465_c0_g1	1937	1957	1948	-20.90	-13.90	0.665071770334928	6.5	1-10,1957-1948;12-18,1946-1940	11-11,1947-1947[SIL];19-21,1939-1937[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AUUUAGUUACUUAUUAUGUAU&AUAUAUAAUAUGUAAUUAUUG	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN21465_c0_g1_1948_TPlot.pdf
TRINITY_DN21465_c0_g1:1949	si_a464	TRINITY_DN21465_c0_g1	1938	1958	1949	-19.60	-14.70	0.75	6	1-11,1958-1948;13-19,1946-1940	12-12,1947-1947[SIL];20-21,1939-1938[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UUUAGUUACUUAUUAUGUAUG&UAUAUAUAAUAUGUAAUUAUU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN21465_c0_g1_1949_TPlot.pdf
TRINITY_DN21465_c0_g1:1950	si_a463	TRINITY_DN21465_c0_g1	1939	1959	1950	-19.70	-14.70	0.746192893401015	5.5	2-12,1958-1948;14-20,1946-1940	1-1,1959-1959[UP5];13-13,1947-1947[SIL];21-21,1939-1939[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UUAGUUACUUAUUAUGUAUGU&UUAUAUAUAAUAUGUAAUUAU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN21465_c0_g1_1950_TPlot.pdf
TRINITY_DN21468_c0_g1:1888	si_a349	TRINITY_DN21468_c0_g1	1877	1899	1888	-21.30	-14.20	0.666666666666667	6	1-6,1899-1894;7-9,1892-1890;10-21,1888-1877	x-x,1893-1893[BULt];x-x,1889-1889[BULt]	((((((((((((.(((.((((((&))))))-)))-))))))))))))	UAAAGUAGAAUUGGAUAAUUUUC&GAAAAU-AUU-AAUUCUAUUUUG	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN21468_c0_g1_1888_TPlot.pdf
TRINITY_DN21468_c0_g1:2350	si_a795	TRINITY_DN21468_c0_g1	2339	2359	2350	-30.20	-20.00	0.662251655629139	10.5	3-5,2357-2355;8-19,2352-2341	1-2,2359-2358[UP5];6-7,2354-2353[SIL];20-21,2340-2339[UP3]	..((((((((((((..(((..&..)))..))))))))))))..	AAUCGGGUUGGAAGUGAGACC&UUUCUAUUUUCCAAUCCGAAG	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN21468_c0_g1_2350_TPlot.pdf
TRINITY_DN21468_c0_g1:3026	si_a360	TRINITY_DN21468_c0_g1	3015	3035	3026	-29.10	-19.70	0.676975945017182	8	1-6,3035-3030;8-10,3028-3026;12-19,3024-3017	7-7,3029-3029[SIL];11-11,3025-3025[SIL];20-21,3016-3015[UP3]	..((((((((.(((.((((((&)))))).))).))))))))..	CAUGAUCCGAACGACAUGGAA&UUCUAUUUUGAUCGGAUCAAA	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN21468_c0_g1_3026_TPlot.pdf
TRINITY_DN21468_c0_g1:3604	si_a185	TRINITY_DN21468_c0_g1	3593	3613	3604	-31.70	-20.90	0.659305993690852	4.5	1-8,3613-3606;10-20,3604-3594	9-9,3605-3605[SIL];21-21,3593-3593[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	AGAAUGGGGAAAAAUAUUAUU&GAUAAUAUCUUUCCCUGUUCA	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN21468_c0_g1_3604_TPlot.pdf
TRINITY_DN21468_c0_g1:3726	si_a787	TRINITY_DN21468_c0_g1	3715	3738	3726	-26.30	-17.30	0.657794676806084	9.5	1-4,3738-3735;5-16,3731-3720;19-21,3717-3715	x-x,3734-3732[BULt];17-18,3719-3718[SIL]	(((..((((((((((((...((((&))))---))))))))))))..)))	UGGUUAGUAGGAAAAUACCUGAAG&CUUC---UAUUUUUCUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN21468_c0_g1_3726_TPlot.pdf
TRINITY_DN2146_c0_g1:1449	si_s897	TRINITY_DN2146_c0_g1	1438	1458	1449	-31.30	-22.40	0.715654952076677	7	2-15,1457-1444;17-19,1442-1440	1-1,1458-1458[UP5];16-16,1443-1443[SIL];20-21,1439-1438[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	CCGAACUUGGGGAGAAAGCUC&AGGCUUUCUCUUCAAUUUCAA	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN2146_c0_g1_1449_TPlot.pdf
TRINITY_DN2146_c0_g1:1450	si_s896	TRINITY_DN2146_c0_g1	1439	1460	1450	-31.60	-23.30	0.737341772151899	5.5	1-3,1460-1458;4-16,1456-1444;18-20,1442-1440	x-x,1457-1457[BULt];17-17,1443-1443[SIL];21-21,1439-1439[UP3]	.(((.(((((((((((((.(((&)))-))))))))))))).))).	CGAACUUGGGGAGAAAGCUCUA&UAG-GCUUUCUCUUCAAUUUCA	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN2146_c0_g1_1450_TPlot.pdf
TRINITY_DN2146_c0_g1:1456	si_s890	TRINITY_DN2146_c0_g1	1445	1466	1456	-29.50	-19.70	0.667796610169492	14	7-9,1460-1458;10-21,1456-1445	1-6,1466-1461[UP5];x-x,1457-1457[BULt]	((((((((((((.(((......&......)))-))))))))))))	UGGGGAGAAAGCUCUAAUUUGG&AAUAAAUAG-GCUUUCUCUUCA	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN2146_c0_g1_1456_TPlot.pdf
TRINITY_DN21470_c0_g1:297	si_a132	TRINITY_DN21470_c0_g1	280	306	297	-26.80	-17.54	0.654477611940298	17	1-10,306-297;13-21,288-280	11-12,296-289[AILt]	(((((((((........((((((((((&))))))))))------..)))))))))	GACGAUUAACCCAAAGAACUAUUGCUG&UAGCAAUAGU------AAUUAAUCGUU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a132_TRINITY_DN21470_c0_g1_297_TPlot.pdf
TRINITY_DN21483_c0_g1:51	si_a75	TRINITY_DN21483_c0_g1	40	60	51	-21.30	-13.90	0.652582159624413	16	7-19,54-42	1-6,60-55[UP5];20-21,41-40[UP3]	..(((((((((((((......&......)))))))))))))..	UGGAUGAUGAGAAGCUAACAA&CAAAUUGUUUUUCAUUAUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN21483_c0_g1_51_TPlot.pdf
TRINITY_DN2148_c0_g1:1239	si_a411	TRINITY_DN2148_c0_g1	1228	1248	1239	-17.90	-12.00	0.670391061452514	8.5	2-7,1247-1242;9-18,1240-1231	1-1,1248-1248[UP5];8-8,1241-1241[SIL];19-21,1230-1228[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UACUAUUUGAGUAAGAACAAU&UUUGUUUAUAUUUAAAUAAAU	2	0.999997391856114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2148_c0_g1_1239_TPlot.pdf
TRINITY_DN2148_c0_g1:1240	si_a410	TRINITY_DN2148_c0_g1	1229	1249	1240	-17.80	-12.00	0.674157303370786	9.5	3-8,1247-1242;10-19,1240-1231	1-2,1249-1248[UP5];9-9,1241-1241[SIL];20-21,1230-1229[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	ACUAUUUGAGUAAGAACAAUA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999847269923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2148_c0_g1_1240_TPlot.pdf
TRINITY_DN2148_c0_g1:1241	si_a409	TRINITY_DN2148_c0_g1	1230	1250	1241	-19.50	-13.20	0.676923076923077	7	1-2,1250-1249;4-9,1247-1242;11-20,1240-1231	3-3,1248-1248[SIL];10-10,1241-1241[SIL];21-21,1230-1230[UP3]	.((((((((((.((((((.((&)).)))))).)))))))))).	CUAUUUGAGUAAGAACAAUAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999954202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2148_c0_g1_1241_TPlot.pdf
TRINITY_DN2148_c0_g1:1350	si_a494	TRINITY_DN2148_c0_g1	1339	1359	1350	-29.50	-19.60	0.664406779661017	9.5	2-5,1358-1355;8-8,1352-1352;10-21,1350-1339	1-1,1359-1359[UP5];6-7,1354-1353[SIL];9-9,1351-1351[SIL]	((((((((((((.(..((((.&.))))..).))))))))))))	GAAGACGGAAAGGGUAAUGUA&AAUAUGUCGUUUUUCGUCUUC	2	0.999999843420408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2148_c0_g1_1350_TPlot.pdf
TRINITY_DN2148_c0_g1:1763	si_s9	TRINITY_DN2148_c0_g1	1752	1772	1763	-22.90	-15.80	0.689956331877729	9.5	1-15,1772-1758	16-21,1757-1752[UP3]	......(((((((((((((((&)))))))))))))))......	UCCUUGGGUAAUAAUGGGUGA&UUACUUAUUAUUACUAUAUUG	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN2148_c0_g1_1763_TPlot.pdf
TRINITY_DN2148_c0_g1:1765	si_s7	TRINITY_DN2148_c0_g1	1754	1774	1765	-21.70	-15.80	0.728110599078341	10.5	3-17,1772-1758	1-2,1774-1773[UP5];18-21,1757-1754[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUUGGGUAAUAAUGGGUGAAA&UAUUACUUAUUAUUACUAUAU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN2148_c0_g1_1765_TPlot.pdf
TRINITY_DN2148_c0_g1:1766	si_s6	TRINITY_DN2148_c0_g1	1755	1775	1766	-21.70	-15.80	0.728110599078341	11.5	4-18,1772-1758	1-3,1775-1773[UP5];19-21,1757-1755[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUGGGUAAUAAUGGGUGAAAU&AUAUUACUUAUUAUUACUAUA	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN2148_c0_g1_1766_TPlot.pdf
TRINITY_DN2148_c0_g1:1769	si_s3	TRINITY_DN2148_c0_g1	1758	1778	1769	-21.20	-15.40	0.726415094339623	14.5	7-21,1772-1758	1-6,1778-1773[UP5]	(((((((((((((((......&......)))))))))))))))	GGUAAUAAUGGGUGAAAUUUU&UUUAUAUUACUUAUUAUUACU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2148_c0_g1_1769_TPlot.pdf
TRINITY_DN2148_c0_g1:1770	si_s2	TRINITY_DN2148_c0_g1	1759	1779	1770	-20.50	-14.10	0.68780487804878	15.5	8-21,1772-1759	1-7,1779-1773[UP5]	((((((((((((((.......&.......))))))))))))))	GUAAUAAUGGGUGAAAUUUUC&UUUUAUAUUACUUAUUAUUAC	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN2148_c0_g1_1770_TPlot.pdf
TRINITY_DN2148_c0_g1:531	si_s502	TRINITY_DN2148_c0_g1	520	540	531	-22.40	-14.80	0.660714285714286	12.5	5-10,536-531;13-21,528-520	1-4,540-537[UP5];11-12,530-529[SIL]	(((((((((..((((((....&....))))))..)))))))))	AGUGUGGAAGAGUUUUGGUGA&UAAACAAAACAAUUCUAUAUU	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN2148_c0_g1_531_TPlot.pdf
TRINITY_DN2148_c0_g1:812	si_a319	TRINITY_DN2148_c0_g1	801	821	812	-22.40	-15.80	0.705357142857143	8	3-13,819-809;15-18,807-804	1-2,821-820[UP5];14-14,808-808[SIL];19-21,803-801[UP3]	...((((.(((((((((((..&..))))))))))).))))...	AGAAGAACGAUCAUGGAUAUC&UUUAUCCAUGAUUUUUUUAUU	3	0.999999796088195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2148_c0_g1_812_TPlot.pdf
TRINITY_DN2148_c0_g1:813	si_a318	TRINITY_DN2148_c0_g1	802	822	813	-22.50	-15.80	0.702222222222222	9	4-14,819-809;16-19,807-804	1-3,822-820[UP5];15-15,808-808[SIL];20-21,803-802[UP3]	..((((.(((((((((((...&...))))))))))).))))..	GAAGAACGAUCAUGGAUAUCU&AUUUAUCCAUGAUUUUUUUAU	2	0.99986176428727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2148_c0_g1_813_TPlot.pdf
TRINITY_DN2148_c0_g1:814	si_a317	TRINITY_DN2148_c0_g1	803	824	814	-24.30	-15.90	0.654320987654321	9	1-2,824-823;5-15,819-809;17-20,807-804	3-4,822-820[AILt];16-16,808-808[SIL];21-21,803-803[UP3]	.((((.(((((((((((...((&))-..))))))))))).)))).	AAGAACGAUCAUGGAUAUCUUC&GA-UUUAUCCAUGAUUUUUUUA	2	0.999999537623541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2148_c0_g1_814_TPlot.pdf
TRINITY_DN2148_c0_g1:815	si_a316	TRINITY_DN2148_c0_g1	804	824	815	-26.30	-17.90	0.680608365019011	7	1-3,824-822;6-16,819-809;18-21,807-804	4-5,821-820[SIL];17-17,808-808[SIL]	((((.(((((((((((..(((&)))..))))))))))).))))	AGAACGAUCAUGGAUAUCUUC&GGAUUUAUCCAUGAUUUUUUU	2	0.999311501258161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN2148_c0_g1_815_TPlot.pdf
TRINITY_DN2148_c0_g1:816	si_a315	TRINITY_DN2148_c0_g1	805	825	816	-27.00	-17.90	0.662962962962963	7	1-4,825-822;7-17,819-809;19-21,807-805	5-6,821-820[SIL];18-18,808-808[SIL]	(((.(((((((((((..((((&))))..))))))))))).)))	GAACGAUCAUGGAUAUCUUCA&UGGAUUUAUCCAUGAUUUUUU	2	0.999661310754408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN2148_c0_g1_816_TPlot.pdf
TRINITY_DN2148_c0_g1:817	si_a314	TRINITY_DN2148_c0_g1	806	826	817	-27.10	-17.90	0.660516605166052	9.5	2-5,825-822;8-18,819-809	1-1,826-826[UP5];6-7,821-820[SIL];19-21,808-806[UP3]	...(((((((((((..((((.&.))))..)))))))))))...	AACGAUCAUGGAUAUCUUCAU&UUGGAUUUAUCCAUGAUUUUU	3	0.99999954173757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN2148_c0_g1_817_TPlot.pdf
TRINITY_DN2148_c0_g1:935	si_a471	TRINITY_DN2148_c0_g1	923	944	935	-21.10	-13.92	0.659715639810426	10.5	1-10,944-935;14-20,930-924	11-13,934-931[AILt];21-21,923-923[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	UUGUGGCAUGUUAUUACAUGUU&AAUAUGUAAU-UAUUGUUAUAU	3	0.999999931658372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2148_c0_g1_935_TPlot.pdf
TRINITY_DN2148_c0_g1:936	si_a470	TRINITY_DN2148_c0_g1	924	945	936	-21.30	-15.12	0.709859154929577	8.5	1-11,945-935;15-21,930-924	12-14,934-931[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	UGUGGCAUGUUAUUACAUGUUA&UAAUAUGUAAU-UAUUGUUAUA	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN2148_c0_g1_936_TPlot.pdf
TRINITY_DN2148_c0_g1:937	si_a469	TRINITY_DN2148_c0_g1	925	946	937	-21.10	-13.92	0.659715639810426	8.5	2-12,945-935;16-21,930-925	1-1,946-946[UP5];13-15,934-931[AILt]	((((((....(((((((((((.&.)))))))))))-...))))))	GUGGCAUGUUAUUACAUGUUAG&AUAAUAUGUAAU-UAUUGUUAU	3	0.999997540575938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN2148_c0_g1_937_TPlot.pdf
TRINITY_DN21499_c0_g1:276	si_a835	TRINITY_DN21499_c0_g1	265	285	276	-26.00	-17.70	0.680769230769231	16	8-20,278-266	1-7,285-279[UP5];21-21,265-265[UP3]	.(((((((((((((.......&.......))))))))))))).	AAGCGGCUUCUGUUGAUGAAU&GAAAAAAAAUAGAAGUUGCUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN21499_c0_g1_276_TPlot.pdf
TRINITY_DN2149_c0_g1:1185	si_s533	TRINITY_DN2149_c0_g1	1174	1194	1185	-28.80	-19.00	0.659722222222222	10.5	3-17,1192-1178	1-2,1194-1193[UP5];18-21,1177-1174[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUUUUUGGAUCAGGGAUGAAA&AAUCAUUUUUGAUCCGAUCAA	2	0.981132633276911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN2149_c0_g1_1185_TPlot.pdf
TRINITY_DN2152_c0_g1:1087	si_a332	TRINITY_DN2152_c0_g1	1076	1096	1087	-30.60	-19.90	0.650326797385621	17	7-17,1090-1080	1-6,1096-1091[UP5];18-21,1079-1076[UP3]	....(((((((((((......&......)))))))))))....	AUGGGGGACGAGGAGGACAAU&UUUUUAUUCCUUGUCCCGAAA	2	0.999909460046264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN2152_c0_g1_1087_TPlot.pdf
TRINITY_DN2152_c0_g1:1091	si_a328	TRINITY_DN2152_c0_g1	1080	1100	1091	-30.10	-20.70	0.687707641196013	15.5	1-3,1100-1098;11-21,1090-1080	4-10,1097-1091[SIL]	(((((((((((.......(((&))).......)))))))))))	GGGACGAGGAGGACAAUCAUC&GAUUUUUUUAUUCCUUGUCCC	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2152_c0_g1_1091_TPlot.pdf
TRINITY_DN2152_c0_g1:1457	si_s529	TRINITY_DN2152_c0_g1	1446	1467	1457	-30.30	-19.78	0.652805280528053	11	1-4,1467-1464;7-8,1459-1458;10-21,1457-1446	5-6,1463-1460[AILt];9-9,x-x[BULq]	((((((((((((-((....((((&))))--..)).))))))))))))	UCGGAUCAAAAG-GAGUACUCGA&UCGA--AAUCAUUUUUGAUCCGA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN2152_c0_g1_1457_TPlot.pdf
TRINITY_DN2152_c0_g1:1582	si_s86	TRINITY_DN2152_c0_g1	1570	1592	1582	-32.90	-21.70	0.659574468085106	12	4-8,1589-1585;9-10,1583-1582;11-21,1580-1570	1-3,1592-1590[UP5];x-x,1584-1584[BULt];x-x,1581-1581[BULt]	(((((((((((.((.(((((...&...)))))-))-)))))))))))	AGCGGAGGAGAUGGCAGAGGUUC&UUUCCUUU-CU-UCUUCUUCGCU	2	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2152_c0_g1_1582_TPlot.pdf
TRINITY_DN2152_c0_g1:1604	si_a65	TRINITY_DN2152_c0_g1	1593	1613	1604	-27.70	-19.98	0.72129963898917	8	1-12,1613-1602;16-20,1598-1594	13-15,1601-1599[SIL];21-21,1593-1593[UP3]	.(((((...((((((((((((&))))))))))))...))))).	UGGGCAUGGUGAAGGAGGCGG&UCGCUUCUUUCAAAUUGUUUU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN2152_c0_g1_1604_TPlot.pdf
TRINITY_DN2152_c0_g1:1614	si_a324	TRINITY_DN2152_c0_g1	1603	1623	1614	-27.50	-18.34	0.666909090909091	11.5	1-9,1623-1615;15-20,1609-1604	10-14,1614-1610[SIL];21-21,1603-1603[UP3]	.((((((.....(((((((((&))))))))).....)))))).	GAAGGAGGCGGUGAAUCGUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN2152_c0_g1_1614_TPlot.pdf
TRINITY_DN2152_c0_g1:1621	si_a317	TRINITY_DN2152_c0_g1	1610	1631	1621	-24.30	-16.10	0.662551440329218	12.5	1-5,1631-1627;7-16,1624-1615	6-6,1626-1625[AILt];17-21,1614-1610[UP3]	.....((((((((((..(((((&)))))-.)))))))))).....	GCGGUGAAUCGUGGAGAGAGUC&GAUUU-AUCCAUGAUUUUUUUA	2	0.999996612785375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2152_c0_g1_1621_TPlot.pdf
TRINITY_DN21534_c0_g1:27	si_s698	TRINITY_DN21534_c0_g1	16	36	27	-27.00	-18.70	0.692592592592593	9	4-7,33-30;9-21,28-16	1-3,36-34[UP5];8-8,29-29[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UUUACUGAUAAAUGGGCUUGA&AUUAGUCGAUUUAUUAGUGAA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN21534_c0_g1_27_TPlot.pdf
TRINITY_DN21538_c0_g1:1096	si_s85	TRINITY_DN21538_c0_g1	1086	1105	1096	-33.80	-22.00	0.650887573964497	11	6-11,1100-1095;13-21,1094-1086	1-5,1105-1101[UP5];12-12,x-x[BULq]	(((((((((-((((((.....&.....)))))).)))))))))	GCGAAGAAG-AGAAAGAAAUA&CUUUCCUUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN21538_c0_g1_1096_TPlot.pdf
TRINITY_DN2153_c0_g1:1362	si_s39	TRINITY_DN2153_c0_g1	1351	1371	1362	-22.30	-17.90	0.802690582959641	7.5	3-12,1369-1360;14-20,1358-1352	1-2,1371-1370[UP5];13-13,1359-1359[SIL];21-21,1351-1351[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CGAUCCAAAUGUUAGAGAUGU&AAAUCUUUAAUAAUUGGAUUU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN2153_c0_g1_1362_TPlot.pdf
TRINITY_DN2153_c0_g1:1839	si_s543	TRINITY_DN2153_c0_g1	1828	1849	1839	-28.80	-20.00	0.694444444444444	12	1-9,1849-1841;14-21,1835-1828	10-13,1840-1836[AILt]	((((((((.....(((((((((&)))))))))-....))))))))	UGGUUCUAGUAUGGAUUGGGUC&GAUCCGAUC-AAAAUAGAAUUA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN2153_c0_g1_1839_TPlot.pdf
TRINITY_DN2153_c0_g1:1841	si_s542	TRINITY_DN2153_c0_g1	1829	1850	1841	-29.10	-19.80	0.680412371134021	11	1-10,1850-1841;15-21,1835-1829	11-14,1840-1836[AILt]	(((((((.....((((((((((&))))))))))-....)))))))	GGUUCUAGUAUGGAUUGGGUCA&UGAUCCGAUC-AAAAUAGAAUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s542_TRINITY_DN2153_c0_g1_1841_TPlot.pdf
TRINITY_DN2153_c0_g1:1843	si_s540	TRINITY_DN2153_c0_g1	1831	1852	1843	-29.10	-19.80	0.680412371134021	8	1-12,1852-1841;17-21,1835-1831	13-16,1840-1836[AILt]	(((((.....((((((((((((&))))))))))))-....)))))	UUCUAGUAUGGAUUGGGUCAAA&UUUGAUCCGAUC-AAAAUAGAA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s540_TRINITY_DN2153_c0_g1_1843_TPlot.pdf
TRINITY_DN21540_c0_g1:1584	si_s810	TRINITY_DN21540_c0_g1	1571	1593	1584	-27.90	-18.40	0.659498207885305	11.5	3-10,1591-1584;11-20,1581-1572	1-2,1593-1592[UP5];x-x,1583-1582[BULt];21-21,1571-1571[UP3]	.((((((((((..((((((((..&..))))))))--)))))))))).	AAUUGAGGGAGGCGGUAGCGAUG&CUUCGUUACC--UUUUCUUAAUA	4	0.999999997624242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN21540_c0_g1_1584_TPlot.pdf
TRINITY_DN2154_c0_g1:1088	si_a862	TRINITY_DN2154_c0_g1	1077	1098	1088	-22.70	-14.90	0.656387665198238	10.5	4-8,1095-1091;9-20,1089-1078	1-3,1098-1096[UP5];x-x,1090-1090[BULt];21-21,1077-1077[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	GGGGUCUUUGAUACAUUGGCCA&AAUCCAAU-UAUUAAAGAUUUA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN2154_c0_g1_1088_TPlot.pdf
TRINITY_DN2154_c0_g1:1165	si_a18	TRINITY_DN2154_c0_g1	1154	1173	1165	-26.30	-17.40	0.661596958174905	5.5	2-6,1172-1168;8-21,1167-1154	1-1,1173-1173[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	GAAUUGAGAAUAAA-AGGUUC&AAGCCUAUUUAUUUUUAGUUC	3	0.999993758972638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN2154_c0_g1_1165_TPlot.pdf
TRINITY_DN2154_c0_g1:1278	si_s432	TRINITY_DN2154_c0_g1	1267	1287	1278	-21.30	-14.00	0.657276995305164	10	3-15,1285-1273	1-2,1287-1286[UP5];16-21,1272-1267[UP3]	......(((((((((((((..&..)))))))))))))......	ACUACCAUGUGAUUAUUGUAC&UAACAAUAAUUACAUAUUAUA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN2154_c0_g1_1278_TPlot.pdf
TRINITY_DN2154_c0_g1:1279	si_s431	TRINITY_DN2154_c0_g1	1268	1288	1279	-21.10	-14.00	0.663507109004739	11	4-16,1285-1273	1-3,1288-1286[UP5];17-21,1272-1268[UP3]	.....(((((((((((((...&...))))))))))))).....	CUACCAUGUGAUUAUUGUACC&AUAACAAUAAUUACAUAUUAU	2	0.985472190984285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN2154_c0_g1_1279_TPlot.pdf
TRINITY_DN2154_c0_g1:1280	si_s430	TRINITY_DN2154_c0_g1	1269	1289	1280	-21.30	-14.00	0.657276995305164	11.5	5-17,1285-1273	1-4,1289-1286[UP5];18-21,1272-1269[UP3]	....(((((((((((((....&....)))))))))))))....	UACCAUGUGAUUAUUGUACCA&UAUAACAAUAAUUACAUAUUA	2	0.978631982609921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN2154_c0_g1_1280_TPlot.pdf
TRINITY_DN2154_c0_g1:1281	si_s429	TRINITY_DN2154_c0_g1	1270	1290	1281	-21.10	-14.00	0.663507109004739	12.5	6-18,1285-1273	1-5,1290-1286[UP5];19-21,1272-1270[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCAUGUGAUUAUUGUACCAA&AUAUAACAAUAAUUACAUAUU	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN2154_c0_g1_1281_TPlot.pdf
TRINITY_DN2154_c0_g1:1282	si_s428	TRINITY_DN2154_c0_g1	1271	1291	1282	-21.50	-14.00	0.651162790697674	13.5	7-19,1285-1273	1-6,1291-1286[UP5];20-21,1272-1271[UP3]	..(((((((((((((......&......)))))))))))))..	CCAUGUGAUUAUUGUACCAAA&UAUAUAACAAUAAUUACAUAU	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN2154_c0_g1_1282_TPlot.pdf
TRINITY_DN2154_c0_g1:610	si_s437	TRINITY_DN2154_c0_g1	599	619	610	-19.70	-13.40	0.680203045685279	12	4-17,616-603	1-3,619-617[UP5];18-21,602-599[UP3]	....((((((((((((((...&...))))))))))))))....	AGCCGUAUGGUAUGUAGUAUU&AUAAUUACAUAUUAUAUAUAA	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2154_c0_g1_610_TPlot.pdf
TRINITY_DN2154_c0_g1:933	si_s312	TRINITY_DN2154_c0_g1	923	942	933	-29.00	-21.30	0.73448275862069	6.5	3-11,940-932;13-20,931-924	1-2,942-941[UP5];12-12,x-x[BULq];21-21,923-923[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	GGACAAGAA-GACAGAAUUAA&AAAAUUCUGUCCUUCUUGUUA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2154_c0_g1_933_TPlot.pdf
TRINITY_DN2155_c0_g2:202	si_a118	TRINITY_DN2155_c0_g2	190	211	202	-30.70	-20.30	0.661237785016287	10	3-14,209-198;15-19,196-192	1-2,211-210[UP5];x-x,197-197[BULt];20-21,191-190[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	GCUGCUGCUGGAACAGGUUCAG&ACGAGCUUGUUUUA-UAGCAAU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN2155_c0_g2_202_TPlot.pdf
TRINITY_DN21566_c5_g1:127	si_a244	TRINITY_DN21566_c5_g1	116	136	127	-35.20	-23.70	0.673295454545454	9.5	2-6,135-131;8-19,129-118	1-1,136-136[UP5];7-7,130-130[SIL];20-21,117-116[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CAAUAAUCGGGGGGGUGGGUA&AAUUCGAUCCCCCGAUUGUAU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a244_TRINITY_DN21566_c5_g1_127_TPlot.pdf
TRINITY_DN2156_c0_g1:1705	si_s600	TRINITY_DN2156_c0_g1	1693	1714	1705	-28.20	-20.10	0.712765957446809	6.5	1-11,1714-1704;13-20,1701-1694	12-12,1703-1702[AILt];21-21,1693-1693[UP3]	.((((((((..(((((((((((&)))))))))))-.)))))))).	CAAAAAGGACCUUGCUUGGAUU&AAUCCAAGCGA-AUCUUUUUUA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN2156_c0_g1_1705_TPlot.pdf
TRINITY_DN2156_c0_g1:1711	si_s615	TRINITY_DN2156_c0_g1	1698	1720	1711	-28.30	-18.90	0.667844522968198	10	4-17,1717-1704;18-21,1701-1698	1-3,1720-1718[UP5];x-x,1703-1702[BULt]	((((..((((((((((((((...&...))))))))))))))--))))	AGGACCUUGCUUGGAUUUGGCUA&UUUUUAAAUCCAAGCGA--UCUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s615_TRINITY_DN2156_c0_g1_1711_TPlot.pdf
TRINITY_DN21573_c0_g1:2684	si_s484	TRINITY_DN21573_c0_g1	2673	2693	2684	-20.50	-13.90	0.678048780487805	9	1-13,2693-2681	14-21,2680-2673[UP3]	........(((((((((((((&)))))))))))))........	AAAUACAGAAAUAGAUAUAGG&CCUAUAUUUAUUUAAAUAUAA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN21573_c0_g1_2684_TPlot.pdf
TRINITY_DN21573_c0_g1:2685	si_s483	TRINITY_DN21573_c0_g1	2674	2694	2685	-21.40	-15.50	0.724299065420561	8	1-14,2694-2681	15-21,2680-2674[UP3]	.......((((((((((((((&)))))))))))))).......	AAUACAGAAAUAGAUAUAGGA&UCCUAUAUUUAUUUAAAUAUA	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN21573_c0_g1_2685_TPlot.pdf
TRINITY_DN21573_c0_g1:2686	si_s482	TRINITY_DN21573_c0_g1	2675	2695	2686	-21.20	-15.50	0.731132075471698	8	2-15,2694-2681	1-1,2695-2695[UP5];16-21,2680-2675[UP3]	......((((((((((((((.&.))))))))))))))......	AUACAGAAAUAGAUAUAGGAA&AUCCUAUAUUUAUUUAAAUAU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN21573_c0_g1_2686_TPlot.pdf
TRINITY_DN21573_c0_g1:2774	si_a547	TRINITY_DN21573_c0_g1	2763	2783	2774	-26.90	-19.70	0.732342007434944	9	6-21,2778-2763	1-5,2783-2779[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAUAAAGAAAUAGAUGUAGA&GUUCAAUCUAUUUCUUUAUCU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN21573_c0_g1_2774_TPlot.pdf
TRINITY_DN21578_c0_g1:1877	si_a463	TRINITY_DN21578_c0_g1	1866	1886	1877	-19.70	-13.10	0.66497461928934	6.5	1-7,1886-1880;9-19,1878-1868	8-8,1879-1879[SIL];20-21,1867-1866[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	UAAAUUAUAUAUUUUGUAUGA&UUAUAUAUAAUAUGUAAUUAU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN21578_c0_g1_1877_TPlot.pdf
TRINITY_DN21578_c0_g1:1880	si_a460	TRINITY_DN21578_c0_g1	1869	1889	1880	-21.60	-14.50	0.671296296296296	6.5	2-10,1888-1880;12-21,1878-1869	1-1,1889-1889[UP5];11-11,1879-1879[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AUUAUAUAUUUUGUAUGAUAU&UUGUUAUAUAUAAUAUGUAAU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN21578_c0_g1_1880_TPlot.pdf
TRINITY_DN21587_c0_g1:396	si_s68	TRINITY_DN21587_c0_g1	385	405	396	-23.10	-18.40	0.796536796536796	9	4-21,402-385	1-3,405-403[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGGGAAAGAAGAUAGGAGAGA&CAACUUCUAUUUUUUUUCUUU	1	0.0476154454195384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN21587_c0_g1_396_TPlot.pdf
TRINITY_DN21587_c0_g1:397	si_s67	TRINITY_DN21587_c0_g1	386	406	397	-25.60	-18.10	0.70703125	10.5	5-21,402-386	1-4,406-403[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGGAAAGAAGAUAGGAGAGAC&GCAACUUCUAUUUUUUUUCUU	4	0.999991030208567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN21587_c0_g1_397_TPlot.pdf
TRINITY_DN21587_c0_g1:403	si_s77	TRINITY_DN21587_c0_g1	392	412	403	-25.50	-20.50	0.803921568627451	6	1-6,412-407;8-15,405-398;17-21,396-392	7-7,406-406[SIL];16-16,397-397[SIL]	(((((.((((((((.((((((&)))))).)))))))).)))))	GAAGAUAGGAGAGACAGAAGA&UUUUUUUUCUUUCCUUUCUUC	1	0.129314527227275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN21587_c0_g1_403_TPlot.pdf
TRINITY_DN21587_c0_g1:405	si_s75	TRINITY_DN21587_c0_g1	394	414	405	-24.00	-16.40	0.683333333333333	8.5	3-8,412-407;10-17,405-398;19-21,396-394	1-2,414-413[UP5];9-9,406-406[SIL];18-18,397-397[SIL]	(((.((((((((.((((((..&..)))))).)))))))).)))	AGAUAGGAGAGACAGAAGAAG&UAUUUUUUUUCUUUCCUUUCU	1	0.587308095315304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN21587_c0_g1_405_TPlot.pdf
TRINITY_DN21592_c0_g1:243	si_s216	TRINITY_DN21592_c0_g1	229	252	243	-35.80	-23.40	0.653631284916201	12	2-10,251-243;11-15,238-234;17-21,233-229	1-1,252-252[UP5];x-x,242-239[BULt];16-16,x-x[BULq]	(((((-(((((....(((((((((.&.)))))))))----))))).)))))	UUCAC-CGGUUAAAAUCGGGCACAU&UUGUGUUCGA----AACCGCGUGAA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN21592_c0_g1_243_TPlot.pdf
TRINITY_DN21592_c0_g1:513	si_s799	TRINITY_DN21592_c0_g1	502	523	513	-30.00	-20.10	0.67	8	1-8,523-516;11-16,512-507;18-21,505-502	9-10,515-513[AILt];17-17,506-506[SIL]	((((.((((((...((((((((&))))))))-..)))))).))))	GGUAUCGAAGAGGUAAAUAUGA&UCGUAUUU-UAUCUUCGUUACC	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN21592_c0_g1_513_TPlot.pdf
TRINITY_DN2159_c2_g1:549	si_a410	TRINITY_DN2159_c2_g1	538	558	549	-17.80	-13.20	0.741573033707865	8.5	2-4,557-555;6-19,553-540	1-1,558-558[UP5];5-5,554-554[SIL];20-21,539-538[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	CCUAUUUGAAUAUGGAGAGAG&UUUUGUUUAUAUUUAAAUAAA	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2159_c2_g1_549_TPlot.pdf
TRINITY_DN2161_c0_g1:2413	si_a76	TRINITY_DN2161_c0_g1	2402	2422	2413	-21.20	-17.50	0.825471698113208	8	3-19,2420-2404	1-2,2422-2421[UP5];20-21,2403-2402[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACUAGUAGUGGAGAACAAUAU&AAAUUGUUUUUCAUUAUUAAG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN2161_c0_g1_2413_TPlot.pdf
TRINITY_DN2161_c0_g1:2898	si_s73	TRINITY_DN2161_c0_g1	2882	2907	2898	-24.00	-16.20	0.675	15.5	1-11,2907-2897;12-18,2891-2885	x-x,2896-2892[BULt];19-21,2884-2882[UP3]	...(((((((.....(((((((((((&)))))))))))-----)))))))...	ACCGGGAAGACCACCAAAAAGAUGGA&UCUAUUUUUUU-----UCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2161_c0_g1_2898_TPlot.pdf
TRINITY_DN2161_c0_g1:2899	si_s72	TRINITY_DN2161_c0_g1	2883	2908	2899	-24.10	-17.10	0.70954356846473	14.5	1-12,2908-2897;13-19,2891-2885	x-x,2896-2892[BULt];20-21,2884-2883[UP3]	..(((((((.....((((((((((((&))))))))))))-----)))))))..	CCGGGAAGACCACCAAAAAGAUGGAA&UUCUAUUUUUUU-----UCUUUCCUU	2	0.999999999879417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2161_c0_g1_2899_TPlot.pdf
TRINITY_DN2161_c0_g1:2900	si_s71	TRINITY_DN2161_c0_g1	2884	2909	2900	-25.70	-20.30	0.78988326848249	8.5	1-13,2909-2897;14-20,2891-2885	x-x,2896-2892[BULt];21-21,2884-2884[UP3]	.(((((((.....(((((((((((((&)))))))))))))-----))))))).	CGGGAAGACCACCAAAAAGAUGGAAG&CUUCUAUUUUUUU-----UCUUUCCU	2	0.966553182246443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2161_c0_g1_2900_TPlot.pdf
TRINITY_DN2161_c0_g1:2901	si_s70	TRINITY_DN2161_c0_g1	2885	2910	2901	-25.80	-20.20	0.782945736434108	8.5	2-14,2909-2897;15-21,2891-2885	1-1,2910-2910[UP5];x-x,2896-2892[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	GGGAAGACCACCAAAAAGAUGGAAGG&ACUUCUAUUUUUUU-----UCUUUCC	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2161_c0_g1_2901_TPlot.pdf
TRINITY_DN2161_c0_g1:2902	si_s69	TRINITY_DN2161_c0_g1	2886	2911	2902	-23.40	-16.80	0.717948717948718	10.5	3-15,2909-2897;16-21,2891-2886	1-2,2911-2910[UP5];x-x,2896-2892[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	GGAAGACCACCAAAAAGAUGGAAGGA&AACUUCUAUUUUUUU-----UCUUUC	2	0.999999987484145	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2161_c0_g1_2902_TPlot.pdf
TRINITY_DN2161_c0_g1:2908	si_s63	TRINITY_DN2161_c0_g1	2897	2919	2908	-25.80	-19.48	0.755038759689923	11	1-6,2919-2914;9-21,2909-2897	7-8,2913-2910[AILt]	(((((((((((((....((((((&))))))--..)))))))))))))	AAAAAGAUGGAAGGACAGCUGGC&GUUAGC--AACUUCUAUUUUUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2161_c0_g1_2908_TPlot.pdf
TRINITY_DN2161_c0_g1:2909	si_s62	TRINITY_DN2161_c0_g1	2898	2920	2909	-26.50	-18.78	0.708679245283019	12	2-7,2919-2914;10-21,2909-2898	1-1,2920-2920[UP5];8-9,2913-2910[AILt]	((((((((((((....((((((.&.))))))--..))))))))))))	AAAAGAUGGAAGGACAGCUGGCA&AGUUAGC--AACUUCUAUUUUUU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN2161_c0_g1_2909_TPlot.pdf
TRINITY_DN2162_c0_g1:3237	si_a459	TRINITY_DN2162_c0_g1	3226	3245	3237	-23.20	-15.60	0.672413793103448	6.5	1-8,3245-3238;10-18,3237-3229	9-9,x-x[BULq];19-21,3228-3226[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	CAUCGUAUUAUA-AUAGCAAC&GUUGUUAUAUAUAAUAUGUAA	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN2162_c0_g1_3237_TPlot.pdf
TRINITY_DN2162_c0_g1:3238	si_a457	TRINITY_DN2162_c0_g1	3228	3247	3238	-23.50	-17.20	0.731914893617021	5.5	1-10,3247-3238;12-20,3237-3229	11-11,x-x[BULq];21-21,3228-3228[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	UCGUAUUAUA-AUAGCAACGA&UUGUUGUUAUAUAUAAUAUGU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN2162_c0_g1_3238_TPlot.pdf
TRINITY_DN2162_c0_g1:3240	si_a455	TRINITY_DN2162_c0_g1	3230	3249	3240	-21.10	-15.20	0.720379146919431	6.5	3-12,3247-3238;14-21,3237-3230	1-2,3249-3248[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	GUAUUAUA-AUAGCAACGAAA&AAUUGUUGUUAUAUAUAAUAU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN2162_c0_g1_3240_TPlot.pdf
TRINITY_DN2162_c0_g1:4917	si_s89	TRINITY_DN2162_c0_g1	4905	4926	4917	-35.30	-25.40	0.719546742209632	6.5	3-13,4924-4914;14-20,4912-4906	1-2,4926-4925[UP5];x-x,4913-4913[BULt];21-21,4905-4905[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	GGGAGCGAGAGAAGAAGAGAAU&CCUUUCUUCUUCU-UCGCUUCG	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2162_c0_g1_4917_TPlot.pdf
TRINITY_DN2162_c0_g1:5604	si_s813	TRINITY_DN2162_c0_g1	5593	5613	5604	-27.10	-18.70	0.690036900369004	10	1-14,5613-5600	15-21,5599-5593[UP3]	.......((((((((((((((&)))))))))))))).......	GAUGACAAAGAAGAGGUGAUG&CGUUACCUUUUCUUAAUAAUG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN2162_c0_g1_5604_TPlot.pdf
TRINITY_DN2162_c0_g1:5606	si_s811	TRINITY_DN2162_c0_g1	5595	5615	5606	-26.40	-19.00	0.71969696969697	10	2-16,5614-5600	1-1,5615-5615[UP5];17-21,5599-5595[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGACAAAGAAGAGGUGAUGGC&UUCGUUACCUUUUCUUAAUAA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN2162_c0_g1_5606_TPlot.pdf
TRINITY_DN2162_c0_g1:5609	si_s808	TRINITY_DN2162_c0_g1	5598	5618	5609	-28.60	-19.00	0.664335664335664	12.5	5-19,5614-5600	1-4,5618-5615[UP5];20-21,5599-5598[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAAGAAGAGGUGAUGGCUGU&AUCUUCGUUACCUUUUCUUAA	4	0.999999999950976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2162_c0_g1_5609_TPlot.pdf
TRINITY_DN2162_c0_g1:5685	si_a582	TRINITY_DN2162_c0_g1	5672	5694	5685	-32.80	-21.70	0.661585365853659	6	2-12,5693-5683;14-15,5681-5680;16-20,5677-5673	1-1,5694-5694[UP5];13-13,5682-5682[SIL];x-x,5679-5678[BULt];21-21,5672-5672[UP3]	.(((((..((.(((((((((((.&.))))))))))).))--))))).	GUGUCCGAUUGUUGUUGCAAACG&UGUUUGUAACAAGAA--GGACAG	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN2162_c0_g1_5685_TPlot.pdf
TRINITY_DN2162_c0_g1:5716	si_a853	TRINITY_DN2162_c0_g1	5705	5725	5716	-26.30	-17.80	0.67680608365019	9	1-10,5725-5716;12-15,5714-5711	11-11,5715-5715[SIL];16-21,5710-5705[UP3]	......((((.((((((((((&)))))))))).))))......	CGAGUGUGGAGUUCAAGUUGG&CUAACUUGAAAUCCAAUUAUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a853_TRINITY_DN2162_c0_g1_5716_TPlot.pdf
TRINITY_DN2162_c0_g1:5739	si_a764	TRINITY_DN2162_c0_g1	5728	5748	5739	-28.90	-19.50	0.674740484429066	9	1-4,5748-5745;6-19,5743-5730	5-5,5744-5744[SIL];20-21,5729-5728[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	CCGGGUCGAUCGAAAGGUCAG&UUGGGUUUUUGAUUGAUUCAA	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2162_c0_g1_5739_TPlot.pdf
TRINITY_DN2162_c0_g1:5740	si_a763	TRINITY_DN2162_c0_g1	5729	5749	5740	-28.80	-19.90	0.690972222222222	9.5	2-5,5748-5745;7-20,5743-5730	1-1,5749-5749[UP5];6-6,5744-5744[SIL];21-21,5729-5729[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	CGGGUCGAUCGAAAGGUCAGG&UUUGGGUUUUUGAUUGAUUCA	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2162_c0_g1_5740_TPlot.pdf
TRINITY_DN2162_c0_g1:5741	si_a762	TRINITY_DN2162_c0_g1	5730	5750	5741	-29.70	-20.00	0.673400673400673	9.5	2-6,5749-5745;8-21,5743-5730	1-1,5750-5750[UP5];7-7,5744-5744[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GGGUCGAUCGAAAGGUCAGGA&CUUUGGGUUUUUGAUUGAUUC	4	0.999999348004209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2162_c0_g1_5741_TPlot.pdf
TRINITY_DN2162_c0_g1:5838	si_a497	TRINITY_DN2162_c0_g1	5827	5846	5838	-32.00	-20.90	0.653125	11.5	2-2,5845-5845;4-7,5843-5840;11-21,5837-5827	1-1,5846-5846[UP5];3-3,5844-5844[SIL];8-10,5839-5838[AILq]	(((((((((((..-((((.(.&.).))))...)))))))))))	GAGGGAGGCGAUC-GCGAGAA&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2162_c0_g1_5838_TPlot.pdf
TRINITY_DN2162_c0_g1:5843	si_s77	TRINITY_DN2162_c0_g1	5827	5852	5843	-25.50	-17.20	0.674509803921569	13.5	1-11,5852-5842;12-13,5837-5836;14-21,5834-5827	x-x,5841-5838[BULt];x-x,5835-5835[BULt]	((((((((.((....(((((((((((&)))))))))))----))-))))))))	GAGGGAGGCGAUCGCGAGAAGAAGAA&UUUUUUUUCUU----UC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2162_c0_g1_5843_TPlot.pdf
TRINITY_DN2162_c0_g1:5846	si_s89	TRINITY_DN2162_c0_g1	5830	5858	5846	-35.30	-23.70	0.671388101983003	13.5	1-3,5858-5856;4-13,5852-5843;14-20,5837-5831	x-x,5855-5853[BULt];x-x,5842-5838[BULt];21-21,5830-5830[UP3]	.(((((((.....((((((((((...(((&)))---))))))))))-----))))))).	GGAGGCGAUCGCGAGAAGAAGAAUUUGGG&CCU---UUCUUCUUCU-----UCGCUUCG	3	0.999999999998377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2162_c0_g1_5846_TPlot.pdf
TRINITY_DN2162_c0_g1:5847	si_s88	TRINITY_DN2162_c0_g1	5831	5859	5847	-34.80	-23.10	0.663793103448276	13.5	2-4,5858-5856;5-14,5852-5843;15-21,5837-5831	1-1,5859-5859[UP5];x-x,5855-5853[BULt];x-x,5842-5838[BULt]	(((((((.....((((((((((...(((.&.)))---))))))))))-----)))))))	GAGGCGAUCGCGAGAAGAAGAAUUUGGGC&UCCU---UUCUUCUUCU-----UCGCUUC	2	0.999999999729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2162_c0_g1_5847_TPlot.pdf
TRINITY_DN2162_c0_g1:5877	si_s236	TRINITY_DN2162_c0_g1	5866	5886	5877	-29.60	-19.60	0.662162162162162	11.5	5-15,5882-5872;17-18,5870-5869	1-4,5886-5883[UP5];16-16,5871-5871[SIL];19-21,5868-5866[UP3]	...((.(((((((((((....&....))))))))))).))...	GAUUGGCUGUUGAUUCCGCCC&AUAAGGAAUCAAUAGGCAUUU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN2162_c0_g1_5877_TPlot.pdf
TRINITY_DN2162_c0_g1:5878	si_s235	TRINITY_DN2162_c0_g1	5867	5887	5878	-29.60	-19.60	0.662162162162162	12.5	6-16,5882-5872;18-19,5870-5869	1-5,5887-5883[UP5];17-17,5871-5871[SIL];20-21,5868-5867[UP3]	..((.(((((((((((.....&.....))))))))))).))..	AUUGGCUGUUGAUUCCGCCCA&AAUAAGGAAUCAAUAGGCAUU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s235_TRINITY_DN2162_c0_g1_5878_TPlot.pdf
TRINITY_DN2162_c0_g1:6627	si_s85	TRINITY_DN2162_c0_g1	6616	6637	6627	-33.80	-22.50	0.665680473372781	10.5	2-8,6636-6630;10-11,6627-6626;13-21,6624-6616	1-1,6637-6637[UP5];9-9,6629-6628[AILt];12-12,6625-6625[SIL]	(((((((((.((..(((((((.&.)))))))-.)).)))))))))	GCGAGGAAGCGGCCGAGGAGAU&CUUUCCUU-UCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2162_c0_g1_6627_TPlot.pdf
TRINITY_DN21634_c0_g2:142	si_a496	TRINITY_DN21634_c0_g2	131	151	142	-32.40	-21.20	0.654320987654321	6.5	1-10,151-142;12-14,140-138;17-21,135-131	11-11,141-141[SIL];15-16,137-136[SIL]	(((((..(((.((((((((((&)))))))))).)))..)))))	AGGAAUUCGACAAGCGGCAUG&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN21634_c0_g2_142_TPlot.pdf
TRINITY_DN2163_c0_g1:2724	si_s427	TRINITY_DN2163_c0_g1	2713	2733	2724	-23.00	-15.30	0.665217391304348	6	2-17,2732-2717	1-1,2733-2733[UP5];18-21,2716-2713[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGCAUAAUUAUUGUUAUGUAA&CUAUAUAACAAUAAUUACAUA	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN2163_c0_g1_2724_TPlot.pdf
TRINITY_DN2163_c0_g1:2726	si_s425	TRINITY_DN2163_c0_g1	2715	2735	2726	-23.50	-15.30	0.651063829787234	8	4-19,2732-2717	1-3,2735-2733[UP5];20-21,2716-2715[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAUAAUUAUUGUUAUGUAAAU&UUCUAUAUAACAAUAAUUACA	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s425_TRINITY_DN2163_c0_g1_2726_TPlot.pdf
TRINITY_DN2163_c0_g1:2727	si_s424	TRINITY_DN2163_c0_g1	2716	2736	2727	-22.90	-15.30	0.668122270742358	9	5-20,2732-2717	1-4,2736-2733[UP5];21-21,2716-2716[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUAAUUAUUGUUAUGUAAAUA&AUUCUAUAUAACAAUAAUUAC	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN2163_c0_g1_2727_TPlot.pdf
TRINITY_DN2163_c0_g2:1216	si_s79	TRINITY_DN2163_c0_g2	1205	1226	1216	-26.20	-18.20	0.694656488549618	11.5	4-9,1223-1218;10-19,1216-1207	1-3,1226-1224[UP5];x-x,1217-1217[BULt];20-21,1206-1205[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	AUGAAGAGAGGGUGAGAAACAA&UUUUUUCUU-UCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2163_c0_g2_1216_TPlot.pdf
TRINITY_DN2163_c0_g2:1223	si_a73	TRINITY_DN2163_c0_g2	1212	1233	1223	-21.90	-14.40	0.657534246575343	9	1-4,1233-1230;6-18,1227-1215	5-5,1229-1228[AILt];19-21,1214-1212[UP3]	...(((((((((((((..((((&))))-.)))))))))))))...	GAGGGUGAGAAACAAUAAUGAG&UUCA-AAUUGUUUUUCAUUAUU	4	0.999999999999825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2163_c0_g2_1223_TPlot.pdf
TRINITY_DN2164_c2_g1:468	si_a66	TRINITY_DN2164_c2_g1	457	477	468	-26.70	-19.20	0.719101123595506	7	2-13,476-465;15-20,463-458	1-1,477-477[UP5];14-14,464-464[SIL];21-21,457-457[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CGGGAUAUUUUGGAAGAGGCA&CGCUUCUUUCAAAUUGUUUUU	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2164_c2_g1_468_TPlot.pdf
TRINITY_DN21657_c0_g2:1572	si_s436	TRINITY_DN21657_c0_g2	1561	1581	1572	-19.60	-14.20	0.724489795918367	4.5	1-14,1581-1568;17-20,1565-1562	15-16,1567-1566[SIL];21-21,1561-1561[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AGUAUCAAAUAUGUAGUUAUU&AAUAAUUACAUAUUAUAUAUA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN21657_c0_g2_1572_TPlot.pdf
TRINITY_DN21658_c0_g1:563	si_a788	TRINITY_DN21658_c0_g1	552	572	563	-24.80	-17.10	0.689516129032258	6	1-4,572-569;6-16,567-557;18-21,555-552	5-5,568-568[SIL];17-17,556-556[SIL]	((((.(((((((((((.((((&)))).))))))))))).))))	UUGGUAGGUAGAGAGAGAGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.9999999868209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN21658_c0_g1_563_TPlot.pdf
TRINITY_DN21661_c0_g2:749	si_a463	TRINITY_DN21661_c0_g2	737	758	749	-19.70	-13.50	0.685279187817259	5.5	2-14,757-745;15-21,743-737	1-1,758-758[UP5];x-x,744-744[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AUGGUUAUUAUGUUAUAUAUGC&UUAUAUAUAAUAUG-UAAUUAU	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN21661_c0_g2_749_TPlot.pdf
TRINITY_DN21661_c0_g3:2597	si_a472	TRINITY_DN21661_c0_g3	2586	2606	2597	-21.50	-14.40	0.669767441860465	10	4-18,2603-2589	1-3,2606-2604[UP5];19-21,2588-2586[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUGGUAGCAAUAAUUAUACGG&AUAUGUAAUUAUUGUUAUAUA	4	0.999989419620488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN21661_c0_g3_2597_TPlot.pdf
TRINITY_DN2166_c0_g1:1346	si_s77	TRINITY_DN2166_c0_g1	1334	1355	1346	-25.50	-16.70	0.654901960784314	9	3-12,1353-1344;13-18,1342-1337	1-2,1355-1354[UP5];x-x,1343-1343[BULt];19-21,1336-1334[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	CCCGAAAGGAAAAGAAGAAAUU&UUUUUUUUCUUU-CCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2166_c0_g1_1346_TPlot.pdf
TRINITY_DN2166_c0_g1:1427	si_s105	TRINITY_DN2166_c0_g1	1414	1436	1427	-30.20	-20.00	0.662251655629139	8.5	1-7,1436-1430;9-14,1428-1423;15-18,1420-1417	8-8,1429-1429[SIL];x-x,1422-1421[BULt];19-21,1416-1414[UP3]	...((((..((((((.(((((((&))))))).))))))--))))...	UUGCUGUCAUUUCCACUCCGGAG&CUUCGGAUUGGAAA--AUAGAAA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s105_TRINITY_DN2166_c0_g1_1427_TPlot.pdf
TRINITY_DN2166_c0_g1:1444	si_s73	TRINITY_DN2166_c0_g1	1433	1453	1444	-24.00	-17.40	0.725	5	1-12,1453-1442;14-21,1440-1433	13-13,1441-1441[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAGGAAGUAGAAAAAAUGGG&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999999878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2166_c0_g1_1444_TPlot.pdf
TRINITY_DN2166_c0_g1:1446	si_a20	TRINITY_DN2166_c0_g1	1435	1454	1446	-26.70	-18.70	0.700374531835206	6	1-8,1454-1447;10-15,1446-1441;17-20,1439-1436	9-9,x-x[BULq];16-16,1440-1440[SIL];21-21,1435-1435[UP3]	.((((.((((((-((((((((&)))))))).)))))).)))).	AGGAAGUAGAAA-AAAUGGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2166_c0_g1_1446_TPlot.pdf
TRINITY_DN2166_c0_g1:1555	si_s819	TRINITY_DN2166_c0_g1	1544	1564	1555	-23.00	-16.30	0.708695652173913	5	1-14,1564-1551;16-18,1549-1547	15-15,1550-1550[SIL];19-21,1546-1544[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	CGAUUUGAUUAUUAAGAAGAG&CUUUUCUUAAUAAUGAAAAAC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN2166_c0_g1_1555_TPlot.pdf
TRINITY_DN2166_c0_g1:1556	si_s818	TRINITY_DN2166_c0_g1	1545	1565	1556	-23.70	-16.60	0.70042194092827	5	2-15,1564-1551;17-19,1549-1547	1-1,1565-1565[UP5];16-16,1550-1550[SIL];20-21,1546-1545[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	GAUUUGAUUAUUAAGAAGAGU&CCUUUUCUUAAUAAUGAAAAA	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN2166_c0_g1_1556_TPlot.pdf
TRINITY_DN2166_c0_g1:1557	si_s817	TRINITY_DN2166_c0_g1	1546	1566	1557	-24.50	-16.60	0.677551020408163	6	3-16,1564-1551;18-20,1549-1547	1-2,1566-1565[UP5];17-17,1550-1550[SIL];21-21,1546-1546[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	AUUUGAUUAUUAAGAAGAGUA&ACCUUUUCUUAAUAAUGAAAA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN2166_c0_g1_1557_TPlot.pdf
TRINITY_DN2166_c0_g1:1758	si_s798	TRINITY_DN2166_c0_g1	1747	1768	1758	-29.30	-20.10	0.686006825938567	7.5	2-7,1767-1762;8-20,1760-1748	1-1,1768-1768[UP5];x-x,1761-1761[BULt];21-21,1747-1747[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	AUGGCGAGGAUAAGUAUACGGU&CUCGUAU-UUUAUCUUCGUUAC	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN2166_c0_g1_1758_TPlot.pdf
TRINITY_DN2166_c0_g1:2705	si_a597	TRINITY_DN2166_c0_g1	2694	2714	2705	-34.00	-22.30	0.655882352941176	9.5	1-15,2714-2700	16-21,2699-2694[UP3]	......(((((((((((((((&)))))))))))))))......	AAUUUCGCGGGGAUUCUGUCU&GGACAGAAUUUUCGCAAUUCC	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a597_TRINITY_DN2166_c0_g1_2705_TPlot.pdf
TRINITY_DN2166_c0_g1:2706	si_a596	TRINITY_DN2166_c0_g1	2695	2715	2706	-32.30	-22.50	0.696594427244582	9.5	2-16,2714-2700	1-1,2715-2715[UP5];17-21,2699-2695[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUUUCGCGGGGAUUCUGUCUC&AGGACAGAAUUUUCGCAAUUC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN2166_c0_g1_2706_TPlot.pdf
TRINITY_DN2166_c0_g1:2708	si_a594	TRINITY_DN2166_c0_g1	2697	2717	2708	-32.30	-22.50	0.696594427244582	10.5	4-18,2714-2700	1-3,2717-2715[UP5];19-21,2699-2697[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCGCGGGGAUUCUGUCUCAG&GAAGGACAGAAUUUUCGCAAU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN2166_c0_g1_2708_TPlot.pdf
TRINITY_DN2166_c0_g1:2711	si_a591	TRINITY_DN2166_c0_g1	2700	2720	2711	-33.80	-22.10	0.653846153846154	13.5	7-21,2714-2700	1-6,2720-2715[UP5]	(((((((((((((((......&......)))))))))))))))	GCGGGGAUUCUGUCUCAGGGU&CAAGAAGGACAGAAUUUUCGC	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN2166_c0_g1_2711_TPlot.pdf
TRINITY_DN2166_c0_g1:362	si_a60	TRINITY_DN2166_c0_g1	351	372	362	-32.20	-26.30	0.816770186335404	6.5	1-9,372-364;11-19,361-353	10-10,363-362[AILt];20-21,352-351[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	AUUUUGAAGGACUGCGAGUCGA&UCGACUCGC-UUCUUUCAAAUU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN2166_c0_g1_362_TPlot.pdf
TRINITY_DN2167_c0_g1:5791	si_a349	TRINITY_DN2167_c0_g1	5780	5800	5791	-21.30	-14.10	0.661971830985915	13	8-21,5793-5780	1-7,5800-5794[UP5]	((((((((((((((.......&.......))))))))))))))	CAAAAUAGAAUUAAAACUAUU&GAAAAUAUUAAUUCUAUUUUG	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN2167_c0_g1_5791_TPlot.pdf
TRINITY_DN21687_c0_g1:179	si_a70	TRINITY_DN21687_c0_g1	168	188	179	-23.90	-15.60	0.652719665271967	9.5	1-9,188-180;12-19,177-170	10-11,179-178[SIL];20-21,169-168[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AUUGGAAAAUUUUUUGGAGGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN21687_c0_g1_179_TPlot.pdf
TRINITY_DN2168_c0_g1:1180	si_a407	TRINITY_DN2168_c0_g1	1169	1190	1180	-19.80	-13.40	0.676767676767677	6.5	1-4,1190-1187;5-15,1185-1175;17-21,1173-1169	x-x,1186-1186[BULt];16-16,1174-1174[SIL]	(((((.(((((((((((.((((&))))-))))))))))).)))))	AUUUAUAUAUGGACAAGUACAG&UUGU-UUUGUUUAUAUUUAAAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2168_c0_g1_1180_TPlot.pdf
TRINITY_DN21693_c0_g1:1262	si_s805	TRINITY_DN21693_c0_g1	1251	1275	1262	-28.60	-19.40	0.678321678321678	14.5	3-9,1273-1267;10-20,1262-1252	1-2,1275-1274[UP5];x-x,1266-1263[BULt];21-21,1251-1251[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	UGGAAAGGUGAUUCUGGAAGAUAUA&UUUAUCUUC----GUUACCUUUUCU	4	0.999999985978956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN21693_c0_g1_1262_TPlot.pdf
TRINITY_DN21693_c0_g1:2440	si_a314	TRINITY_DN21693_c0_g1	2429	2449	2440	-27.10	-19.30	0.712177121771218	5.5	2-6,2448-2444;8-15,2442-2435;17-21,2433-2429	1-1,2449-2449[UP5];7-7,2443-2443[SIL];16-16,2434-2434[SIL]	(((((.((((((((.(((((.&.))))).)))))))).)))))	GAGAAACGUGGAUACAUCCAG&UUGGAUUUAUCCAUGAUUUUU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN21693_c0_g1_2440_TPlot.pdf
TRINITY_DN21693_c0_g1:2446	si_a308	TRINITY_DN21693_c0_g1	2435	2458	2446	-32.70	-21.90	0.669724770642202	11.5	2-7,2457-2452;8-12,2448-2444;14-21,2442-2435	1-1,2458-2458[UP5];x-x,2451-2449[BULt];13-13,2443-2443[SIL]	((((((((.(((((...((((((.&.))))))---))))).))))))))	CGUGGAUACAUCCAGAUGGUGGAA&AUUCGCU---UGGAUUUAUCCAUG	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN21693_c0_g1_2446_TPlot.pdf
TRINITY_DN21693_c0_g1:2497	si_a402	TRINITY_DN21693_c0_g1	2486	2506	2497	-22.40	-16.60	0.741071428571429	8.5	3-16,2504-2491	1-2,2506-2505[UP5];17-21,2490-2486[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUUAGAACAAAACAAUUCGG&UAGAAUUGUUUUGUUUAUAUU	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN21693_c0_g1_2497_TPlot.pdf
TRINITY_DN21693_c0_g1:2500	si_a399	TRINITY_DN21693_c0_g1	2489	2509	2500	-22.60	-16.60	0.734513274336283	11.5	6-19,2504-2491	1-5,2509-2505[UP5];20-21,2490-2489[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAGAACAAAACAAUUCGGACG&AUAUAGAAUUGUUUUGUUUAU	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN21693_c0_g1_2500_TPlot.pdf
TRINITY_DN21693_c0_g1:2501	si_a398	TRINITY_DN21693_c0_g1	2490	2510	2501	-22.40	-16.60	0.741071428571429	12.5	7-20,2504-2491	1-6,2510-2505[UP5];21-21,2490-2490[UP3]	.((((((((((((((......&......)))))))))))))).	AGAACAAAACAAUUCGGACGA&AAUAUAGAAUUGUUUUGUUUA	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN21693_c0_g1_2501_TPlot.pdf
TRINITY_DN21693_c0_g1:560	si_a784	TRINITY_DN21693_c0_g1	542	569	560	-24.70	-18.50	0.748987854251012	17	2-10,568-560;11-21,552-542	1-1,569-569[UP5];x-x,559-553[BULt]	(((((((((((.......(((((((((.&.)))))))))-------)))))))))))	GAGAUAGAAGACGAGAUAAUAGAAGAGA&ACUCUUCUAU-------UUUUCUAUUUU	3	0.999463646079035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN21693_c0_g1_560_TPlot.pdf
TRINITY_DN21697_c0_g1:1207	si_a665	TRINITY_DN21697_c0_g1	1196	1217	1207	-29.60	-19.70	0.66554054054054	11.5	3-7,1215-1211;8-16,1209-1201	1-2,1217-1216[UP5];x-x,1210-1210[BULt];17-21,1200-1196[UP3]	.....(((((((((.(((((..&..)))))-))))))))).....	GGAGUGGAGUCGAUAAGGCAAA&AAUGCCU-AUUGAUUCCUUAUU	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN21697_c0_g1_1207_TPlot.pdf
TRINITY_DN2169_c0_g1:958	si_s809	TRINITY_DN2169_c0_g1	946	968	958	-28.50	-19.30	0.67719298245614	8.5	1-2,968-967;3-12,965-956;13-21,954-946	x-x,966-966[BULt];x-x,955-955[BULt]	(((((((((.((((((((((.((&))-))))))))))-)))))))))	AUUGGGAGACAGGUGAUGGAUGA&UC-UUCGUUACCU-UUUCUUAAU	4	0.999999866969761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN2169_c0_g1_958_TPlot.pdf
TRINITY_DN216_c0_g1:1181	si_a507	TRINITY_DN216_c0_g1	1170	1190	1181	-34.90	-23.28	0.667048710601719	5.5	1-12,1190-1179;16-19,1175-1172	13-15,1178-1176[SIL];20-21,1171-1170[UP3]	..((((...((((((((((((&))))))))))))...))))..	GCUGCAACACAAGGAAGACGA&UCGUCUUCCUUGGAAUGUAAG	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN216_c0_g1_1181_TPlot.pdf
TRINITY_DN216_c0_g1:1182	si_a506	TRINITY_DN216_c0_g1	1171	1191	1182	-33.40	-23.48	0.702994011976048	5.5	2-13,1190-1179;17-20,1175-1172	1-1,1191-1191[UP5];14-16,1178-1176[SIL];21-21,1171-1171[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	CUGCAACACAAGGAAGACGAG&UUCGUCUUCCUUGGAAUGUAA	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN216_c0_g1_1182_TPlot.pdf
TRINITY_DN216_c0_g1:1183	si_a505	TRINITY_DN216_c0_g1	1172	1192	1183	-33.30	-24.68	0.741141141141141	4.5	1-14,1192-1179;18-21,1175-1172	15-17,1178-1176[SIL]	((((...((((((((((((((&))))))))))))))...))))	UGCAACACAAGGAAGACGAGA&UUUCGUCUUCCUUGGAAUGUA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN216_c0_g1_1183_TPlot.pdf
TRINITY_DN216_c0_g1:1184	si_a504	TRINITY_DN216_c0_g1	1173	1193	1184	-32.90	-23.68	0.719756838905775	5.5	2-15,1192-1179;19-21,1175-1173	1-1,1193-1193[UP5];16-18,1178-1176[SIL]	(((...((((((((((((((.&.))))))))))))))...)))	GCAACACAAGGAAGACGAGAU&UUUUCGUCUUCCUUGGAAUGU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN216_c0_g1_1184_TPlot.pdf
TRINITY_DN216_c0_g1:1186	si_a502	TRINITY_DN216_c0_g1	1175	1195	1186	-32.10	-22.90	0.713395638629283	10	4-17,1192-1179	1-3,1195-1193[UP5];18-21,1178-1175[UP3]	....((((((((((((((...&...))))))))))))))....	AACACAAGGAAGACGAGAUGA&GUUUUUCGUCUUCCUUGGAAU	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN216_c0_g1_1186_TPlot.pdf
TRINITY_DN216_c0_g1:1189	si_a499	TRINITY_DN216_c0_g1	1178	1198	1189	-35.20	-26.60	0.755681818181818	8	1-3,1198-1196;5-5,1194-1194;7-20,1192-1179	4-4,1195-1195[SIL];6-6,1193-1193[SIL];21-21,1178-1178[UP3]	.((((((((((((((.(.(((&))).).)))))))))))))).	ACAAGGAAGACGAGAUGAGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN216_c0_g1_1189_TPlot.pdf
TRINITY_DN216_c0_g1:1190	si_a498	TRINITY_DN216_c0_g1	1179	1199	1190	-33.50	-27.10	0.808955223880597	7	1-4,1199-1196;6-6,1194-1194;8-21,1192-1179	5-5,1195-1195[SIL];7-7,1193-1193[SIL]	((((((((((((((.(.((((&)))).).))))))))))))))	CAAGGAAGACGAGAUGAGGCA&UGUCGUUUUUCGUCUUCCUUG	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN216_c0_g1_1190_TPlot.pdf
TRINITY_DN216_c0_g1:1191	si_a497	TRINITY_DN216_c0_g1	1180	1200	1191	-32.00	-24.00	0.75	8	2-5,1199-1196;7-7,1194-1194;9-21,1192-1180	1-1,1200-1200[UP5];6-6,1195-1195[SIL];8-8,1193-1193[SIL]	(((((((((((((.(.((((.&.)))).).)))))))))))))	AAGGAAGACGAGAUGAGGCAG&AUGUCGUUUUUCGUCUUCCUU	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN216_c0_g1_1191_TPlot.pdf
TRINITY_DN216_c0_g1:1192	si_a496	TRINITY_DN216_c0_g1	1181	1201	1192	-32.40	-23.20	0.716049382716049	10	3-6,1199-1196;8-8,1194-1194;10-21,1192-1181	1-2,1201-1200[UP5];7-7,1195-1195[SIL];9-9,1193-1193[SIL]	((((((((((((.(.((((..&..)))).).))))))))))))	AGGAAGACGAGAUGAGGCAGA&UAUGUCGUUUUUCGUCUUCCU	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN216_c0_g1_1192_TPlot.pdf
TRINITY_DN216_c0_g1:1220	si_s92	TRINITY_DN216_c0_g1	1210	1229	1220	-34.90	-23.10	0.66189111747851	6	1-16,1229-1214;19-21,1212-1210	17-18,1213-1213[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	GUCA-GGGUGAAGGAGAAGGA&UUCUUCUUCUUCGCUUCGGAU	3	0.999999999999832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN216_c0_g1_1220_TPlot.pdf
TRINITY_DN216_c0_g1:22	si_a899	TRINITY_DN216_c0_g1	11	31	22	-18.70	-12.80	0.684491978609626	9	5-21,27-11	1-4,31-28[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUUGUGUUAUUUAUUCAUU&UAAUAAUAAGUAAUAUAAAAA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN216_c0_g1_22_TPlot.pdf
TRINITY_DN2171_c0_g1:439	si_a134	TRINITY_DN2171_c0_g1	427	448	439	-28.20	-19.50	0.691489361702128	6.5	1-6,448-443;8-12,441-437;15-21,433-427	7-7,442-442[SIL];13-14,436-434[AILt]	(((((((...(((((.((((((&)))))).)))))-..)))))))	GCAACGAAACAAUUAGUAUUGC&GCAAUAGUAAUU-AAUCGUUGU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN2171_c0_g1_439_TPlot.pdf
TRINITY_DN2171_c0_g1:775	si_a471	TRINITY_DN2171_c0_g1	764	785	775	-21.10	-14.00	0.663507109004739	8.5	3-9,783-777;10-20,775-765	1-2,785-784[UP5];x-x,776-776[BULt];21-21,764-764[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	CUGUGAUAAUAGUUUACAUAAG&AAUAUGUAA-UUAUUGUUAUAU	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2171_c0_g1_775_TPlot.pdf
TRINITY_DN2171_c0_g1:777	si_a470	TRINITY_DN2171_c0_g1	765	786	777	-21.30	-13.90	0.652582159624413	9.5	4-10,783-777;11-21,775-765	1-3,786-784[UP5];x-x,776-776[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UGUGAUAAUAGUUUACAUAAGA&UAAUAUGUAA-UUAUUGUUAUA	2	0.999950798213283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN2171_c0_g1_777_TPlot.pdf
TRINITY_DN2171_c0_g1:813	si_s93	TRINITY_DN2171_c0_g1	802	823	813	-34.80	-23.50	0.675287356321839	8	2-9,822-815;10-17,813-806	1-1,823-823[UP5];x-x,814-814[BULt];18-21,805-802[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	UUGACGAAGCGGUAGAAGAAGC&UCUUCUUCU-UCGCUUCGGAUU	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2171_c0_g1_813_TPlot.pdf
TRINITY_DN21724_c0_g1:3242	si_s108	TRINITY_DN21724_c0_g1	3231	3251	3242	-27.60	-18.10	0.655797101449275	8.5	2-16,3250-3236	1-1,3251-3251[UP5];17-21,3235-3231[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAGAUCUGUUUUCUAAUCUA&CGGAUUGGAAAAUAGAAAAAU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN21724_c0_g1_3242_TPlot.pdf
TRINITY_DN21726_c1_g1:97	si_a122	TRINITY_DN21726_c1_g1	85	106	97	-29.00	-19.80	0.682758620689655	6	1-4,106-103;6-14,101-93;17-20,89-86	5-5,102-102[SIL];15-16,92-90[AILt];21-21,85-85[UP3]	.((((...(((((((((.((((&)))).)))))))))-..)))).	AACUAGUAGCUAUAAAAGAAGC&GCUUGUUUUAUAGC-AAUAGUA	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN21726_c1_g1_97_TPlot.pdf
TRINITY_DN2173_c0_g1:37	si_s67	TRINITY_DN2173_c0_g1	25	47	37	-25.60	-19.50	0.76171875	7	1-7,47-41;8-13,39-34;15-21,31-25	x-x,40-40[BULt];14-14,33-32[AILt]	(((((((..((((((.(((((((&)))))))-))))))-.)))))))	GAGAAAACUGAGUAGCAGGUUGC&GCAACUU-CUAUUU-UUUUUCUU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2173_c0_g1_37_TPlot.pdf
TRINITY_DN2173_c0_g1:38	si_s66	TRINITY_DN2173_c0_g1	26	48	38	-26.30	-18.40	0.699619771863118	7.5	2-8,47-41;9-14,39-34;16-21,31-26	1-1,48-48[UP5];x-x,40-40[BULt];15-15,33-32[AILt]	((((((..((((((.(((((((.&.)))))))-))))))-.))))))	AGAAAACUGAGUAGCAGGUUGCA&AGCAACUU-CUAUUU-UUUUUCU	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2173_c0_g1_38_TPlot.pdf
TRINITY_DN2173_c0_g1:39	si_s65	TRINITY_DN2173_c0_g1	27	49	39	-26.00	-17.10	0.657692307692308	9	3-9,47-41;10-15,39-34;17-21,31-27	1-2,49-48[UP5];x-x,40-40[BULt];16-16,33-32[AILt]	(((((..((((((.(((((((..&..)))))))-))))))-.)))))	GAAAACUGAGUAGCAGGUUGCAU&UAGCAACUU-CUAUUU-UUUUUC	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN2173_c0_g1_39_TPlot.pdf
TRINITY_DN2173_c0_g1:545	si_s686	TRINITY_DN2173_c0_g1	536	554	545	-28.80	-19.10	0.663194444444445	11	3-11,552-544;14-20,543-537	1-2,554-553[UP5];12-13,x-x[BULq];21-21,536-536[UP3]	.(((((((--(((((((((..&..)))))))))..))))))).	CCGACUGG--GAGCUCGUGAC&AACAUGAGUUUAAUUAGUCGA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s686_TRINITY_DN2173_c0_g1_545_TPlot.pdf
TRINITY_DN21744_c0_g1:488	si_s883	TRINITY_DN21744_c0_g1	476	496	488	-24.30	-16.60	0.683127572016461	6	1-8,496-489;10-14,488-484;15-21,482-476	9-9,x-x[BULq];x-x,483-483[BULt]	(((((((.(((((-((((((((&)))))))).)))))-)))))))	GAGGCCUCAUUUG-UUUUGGUU&AACUAAAAAUAAAU-AGGCUUU	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN21744_c0_g1_488_TPlot.pdf
TRINITY_DN2174_c0_g1:1793	si_s74	TRINITY_DN2174_c0_g1	1782	1802	1793	-25.00	-18.30	0.732	6	1-2,1802-1801;4-17,1799-1786;19-21,1784-1782	3-3,1800-1800[SIL];18-18,1785-1785[SIL]	(((.((((((((((((((.((&)).)))))))))))))).)))	GAAUGGGAGGAAGAAAAGAAG&CUAUUUUUUUUCUUUCCUUUC	4	0.999999995494812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2174_c0_g1_1793_TPlot.pdf
TRINITY_DN21755_c0_g1:753	si_a401	TRINITY_DN21755_c0_g1	742	762	753	-22.60	-14.70	0.650442477876106	14	7-21,756-742	1-6,762-757[UP5]	(((((((((((((((......&......)))))))))))))))	AUAUGAACGAAGCGAGAAUGU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999999845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN21755_c0_g1_753_TPlot.pdf
TRINITY_DN21755_c1_g1:344	si_a226	TRINITY_DN21755_c1_g1	332	353	344	-27.60	-18.70	0.677536231884058	8.5	3-17,351-337;18-19,335-334	1-2,353-352[UP5];x-x,336-336[BULt];20-21,333-332[UP3]	..((.(((((((((((((((..&..)))))))))))))))-))..	UAUGAAUUGUAGAGACGUGACA&ACUCAUGUUUCUAUAAU-CAAU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN21755_c1_g1_344_TPlot.pdf
TRINITY_DN2176_c0_g1:2069	si_a449	TRINITY_DN2176_c0_g1	2058	2076	2069	-25.70	-18.40	0.715953307392996	8	2-7,2075-2070;10-20,2069-2059	1-1,2076-2076[UP5];8-9,x-x[BULq];21-21,2058-2058[UP3]	.(((((((((((--((((((.&.))))))..))))))))))).	AGUGUGACGACA--UAUCUCU&UGAGAUAAUUGUUGUUAUAUA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN2176_c0_g1_2069_TPlot.pdf
TRINITY_DN2176_c1_g1:1610	si_a408	TRINITY_DN2176_c1_g1	1599	1622	1610	-20.10	-15.00	0.746268656716418	12	1-8,1622-1615;9-20,1611-1600	x-x,1614-1612[BULt];21-21,1599-1599[UP3]	.((((((((((((...((((((((&))))))))---)))))))))))).	CGUUUGAAUAUAAUCAGCAGGGCA&UGUUUUGU---UUAUAUUUAAAUA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2176_c1_g1_1610_TPlot.pdf
TRINITY_DN2176_c1_g1:1611	si_a407	TRINITY_DN2176_c1_g1	1600	1623	1611	-19.80	-15.00	0.757575757575758	12	2-9,1622-1615;10-21,1611-1600	1-1,1623-1623[UP5];x-x,1614-1612[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	GUUUGAAUAUAAUCAGCAGGGCAU&UUGUUUUGU---UUAUAUUUAAAU	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2176_c1_g1_1611_TPlot.pdf
TRINITY_DN2176_c2_g1:2757	si_a407	TRINITY_DN2176_c2_g1	2745	2766	2757	-19.80	-13.10	0.661616161616162	8	3-11,2764-2756;12-21,2754-2745	1-2,2766-2765[UP5];x-x,2755-2755[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	AUUUGAGUAUGAGAUAAAACCA&UUGUUUUGUUU-AUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2176_c2_g1_2757_TPlot.pdf
TRINITY_DN21773_c3_g1:54	si_s69	TRINITY_DN21773_c3_g1	42	63	54	-23.40	-15.30	0.653846153846154	8	5-16,59-48;17-21,46-42	1-4,63-60[UP5];x-x,47-47[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GAAAGAAAAAAAAAUAGACAAA&AACUUCUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN21773_c3_g1_54_TPlot.pdf
TRINITY_DN2178_c0_g1:1092	si_a757	TRINITY_DN2178_c0_g1	1081	1100	1092	-33.10	-24.50	0.740181268882175	5.5	1-7,1100-1094;10-14,1092-1088;16-21,1086-1081	8-9,1093-1093[AILq];15-15,1087-1087[SIL]	((((((.(((((.-(((((((&)))))))..))))).))))))	AAUCAGUAACCCU-AGGAGGU&ACCUCCUUUGGGUUUUUGAUU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN2178_c0_g1_1092_TPlot.pdf
TRINITY_DN21790_c2_g1:287	si_a577	TRINITY_DN21790_c2_g1	276	296	287	-30.10	-20.10	0.667774086378738	7	3-5,294-292;7-21,290-276	1-2,296-295[UP5];6-6,291-291[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	CUUCUUGUUAUAAAUUUACCU&UCGUAUGUUUGUAACAAGAAG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a577_TRINITY_DN21790_c2_g1_287_TPlot.pdf
TRINITY_DN2179_c0_g1:556	si_a76	TRINITY_DN2179_c0_g1	545	565	556	-21.20	-13.90	0.655660377358491	8.5	4-13,562-553;15-20,551-546	1-3,565-563[UP5];14-14,552-552[SIL];21-21,545-545[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	UUUGAUAUUGGAAAACAAACU&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999999624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN2179_c0_g1_556_TPlot.pdf
TRINITY_DN217_c0_g1:1220	si_s68	TRINITY_DN217_c0_g1	1209	1229	1220	-23.10	-16.00	0.692640692640693	9.5	5-20,1225-1210	1-4,1229-1226[UP5];21-21,1209-1209[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAGAAAGAAAGUAGAAAAGA&CAACUUCUAUUUUUUUUCUUU	3	0.999999999999857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN217_c0_g1_1220_TPlot.pdf
TRINITY_DN217_c0_g1:1305	si_s6	TRINITY_DN217_c0_g1	1294	1314	1305	-21.70	-15.30	0.705069124423963	14	7-20,1308-1295	1-6,1314-1309[UP5];21-21,1294-1294[UP3]	.((((((((((((((......&......)))))))))))))).	AAUAGUAAUGAUGAGAAGAAU&AUAUUACUUAUUAUUACUAUA	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN217_c0_g1_1305_TPlot.pdf
TRINITY_DN217_c0_g1:740	si_s4	TRINITY_DN217_c0_g1	729	749	740	-21.60	-14.58	0.675	9.5	1-5,749-745;9-20,741-730	6-8,744-742[SIL];21-21,729-729[UP3]	.((((((((((((...(((((&)))))...)))))))))))).	AAGUGAUAGUGAGGUUUAUAG&UUAUAUUACUUAUUAUUACUA	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN217_c0_g1_740_TPlot.pdf
TRINITY_DN2180_c0_g1:3514	si_a790	TRINITY_DN2180_c0_g1	3499	3523	3514	-25.80	-18.90	0.732558139534884	10.5	1-10,3523-3514;11-20,3509-3500	x-x,3513-3510[BULt];21-21,3499-3499[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	UGUUGGAAAAUAAAAGGAAAAAUAG&CUAUUUUUCU----AUUUUCCAAUC	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN2180_c0_g1_3514_TPlot.pdf
TRINITY_DN2180_c0_g1:3515	si_a789	TRINITY_DN2180_c0_g1	3500	3524	3515	-24.80	-20.30	0.818548387096774	9.5	1-11,3524-3514;12-21,3509-3500	x-x,3513-3510[BULt]	((((((((((....(((((((((((&)))))))))))----))))))))))	GUUGGAAAAUAAAAGGAAAAAUAGA&UCUAUUUUUCU----AUUUUCCAAU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2180_c0_g1_3515_TPlot.pdf
TRINITY_DN2180_c0_g1:3516	si_a788	TRINITY_DN2180_c0_g1	3501	3525	3516	-24.80	-19.20	0.774193548387097	10	2-12,3524-3514;13-21,3509-3501	1-1,3525-3525[UP5];x-x,3513-3510[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	UUGGAAAAUAAAAGGAAAAAUAGAU&UUCUAUUUUUCU----AUUUUCCAA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2180_c0_g1_3516_TPlot.pdf
TRINITY_DN2180_c0_g1:3517	si_a787	TRINITY_DN2180_c0_g1	3502	3526	3517	-26.30	-18.40	0.699619771863118	7.5	3-13,3524-3514;14-21,3509-3502	1-2,3526-3525[UP5];x-x,3513-3510[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	UGGAAAAUAAAAGGAAAAAUAGAUA&CUUCUAUUUUUCU----AUUUUCCA	4	0.999999940526879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2180_c0_g1_3517_TPlot.pdf
TRINITY_DN21819_c3_g1:180	si_s573	TRINITY_DN21819_c3_g1	169	189	180	-28.40	-19.60	0.690140845070423	9	1-12,189-178	13-21,177-169[UP3]	.........((((((((((((&)))))))))))).........	CAUUAAUAAUAUUCCUUGUCC&GGACAAGGAAUAAAAAAAUCA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s573_TRINITY_DN21819_c3_g1_180_TPlot.pdf
TRINITY_DN21821_c0_g1:1140	si_a848	TRINITY_DN21821_c0_g1	1129	1149	1140	-31.30	-21.60	0.690095846645367	7.5	1-8,1149-1142;10-11,1140-1139;13-19,1137-1131	9-9,1141-1141[SIL];12-12,1138-1138[SIL];20-21,1130-1129[UP3]	..(((((((.((.((((((((&)))))))).)).)))))))..	AAGGGUUUCCAGAUAGCGACU&AGUUGCUAACUUGAAAUCCAA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN21821_c0_g1_1140_TPlot.pdf
TRINITY_DN21831_c0_g1:217	si_a774	TRINITY_DN21831_c0_g1	205	226	217	-29.20	-19.30	0.660958904109589	9.5	2-10,225-217;12-18,214-208	1-1,226-226[UP5];11-11,216-215[AILt];19-21,207-205[UP3]	...(((((((..(((((((((.&.)))))))))-.)))))))...	AACAGAGGAGGAUGAAUCGAUA&GAUUGAUUCA-ACUCUUCUAUU	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN21831_c0_g1_217_TPlot.pdf
TRINITY_DN21837_c0_g1:2644	si_a26	TRINITY_DN21837_c0_g1	2633	2653	2644	-28.00	-18.84	0.672857142857143	10.5	1-5,2653-2649;11-21,2643-2633	6-10,2648-2644[SIL]	(((((((((((.....(((((&))))).....)))))))))))	CGGUCUUGGAAAAUUUAAUAA&UUAUUUUUAGUUCUAAGACCG	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN21837_c0_g1_2644_TPlot.pdf
TRINITY_DN2183_c0_g1:1073	si_s130	TRINITY_DN2183_c0_g1	1062	1082	1073	-28.70	-19.70	0.686411149825784	7	1-13,1082-1070;15-18,1068-1065	14-14,1069-1069[SIL];19-21,1064-1062[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AAAUGAUGGAUUUGGCUCUUC&GAAGAGUUGAAUCAAUCAAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN2183_c0_g1_1073_TPlot.pdf
TRINITY_DN2184_c0_g2:491	si_s806	TRINITY_DN2184_c0_g2	480	503	491	-28.60	-19.20	0.671328671328671	8.5	1-6,503-498;7-8,494-493;10-21,491-480	x-x,497-495[BULt];9-9,492-492[SIL]	((((((((((((.((...((((((&))))))---)).))))))))))))	AAGAAGAGGUAAAGAAAAAGAUAA&UUAUCU---UCGUUACCUUUUCUU	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2184_c0_g2_491_TPlot.pdf
TRINITY_DN2184_c0_g2:496	si_a548	TRINITY_DN2184_c0_g2	485	505	496	-27.20	-17.90	0.658088235294118	9.5	5-8,501-498;10-21,496-485	1-4,505-502[UP5];9-9,497-497[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAGGUAAAGAAAAAGAUAAGA&UUCAAUCUAUUUCUUUAUCUC	4	0.999969681393287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN2184_c0_g2_496_TPlot.pdf
TRINITY_DN2184_c0_g2:787	si_a412	TRINITY_DN2184_c0_g2	776	800	787	-18.30	-13.80	0.754098360655738	9	1-8,800-793;9-21,788-776	x-x,792-789[BULt]	(((((((((((((....((((((((&))))))))----)))))))))))))	UAUUUAUUUAAAUUAUGAUAGACAA&UUGUUUAU----AUUUAAAUAAAUA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2184_c0_g2_787_TPlot.pdf
TRINITY_DN21854_c0_g1:22	si_s68	TRINITY_DN21854_c0_g1	11	32	22	-23.10	-16.20	0.701298701298701	10	4-5,29-28;6-21,26-11	1-3,32-30[UP5];x-x,27-27[BULt]	((((((((((((((((.((...&...))-))))))))))))))))	AAAGAAAAAGAGUGGACAGGGA&CAACU-UCUAUUUUUUUUCUUU	4	0.999999999935886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN21854_c0_g1_22_TPlot.pdf
TRINITY_DN21857_c0_g1:362	si_a486	TRINITY_DN21857_c0_g1	351	371	362	-24.90	-16.50	0.662650602409639	8.5	1-14,371-358;17-19,355-353	15-16,357-356[SIL];20-21,352-351[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN21857_c0_g1_362_TPlot.pdf
TRINITY_DN21857_c0_g2:3598	si_s82	TRINITY_DN21857_c0_g2	3585	3607	3598	-28.90	-19.50	0.674740484429066	11.5	2-17,3606-3591;18-20,3588-3586	1-1,3607-3607[UP5];x-x,3590-3589[BULt];21-21,3585-3585[UP3]	.(((..((((((((((((((((.&.))))))))))))))))--))).	UGGAUCAGAAGGGGGGGGAGGGU&UUUCUUUCCUUUCUUCU--UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN21857_c0_g2_3598_TPlot.pdf
TRINITY_DN21857_c0_g2:3599	si_s81	TRINITY_DN21857_c0_g2	3586	3608	3599	-28.90	-19.50	0.674740484429066	12	3-18,3606-3591;19-21,3588-3586	1-2,3608-3607[UP5];x-x,3590-3589[BULt]	(((..((((((((((((((((..&..))))))))))))))))--)))	GGAUCAGAAGGGGGGGGAGGGUA&UUUUCUUUCCUUUCUUCU--UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN21857_c0_g2_3599_TPlot.pdf
TRINITY_DN21857_c0_g2:3602	si_s75	TRINITY_DN21857_c0_g2	3591	3611	3602	-24.00	-16.50	0.6875	15.5	6-21,3606-3591	1-5,3611-3607[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAGGGGGGGGAGGGUAGCU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN21857_c0_g2_3602_TPlot.pdf
TRINITY_DN21857_c0_g2:3642	si_a755	TRINITY_DN21857_c0_g2	3631	3655	3642	-34.90	-23.80	0.681948424068768	15	1-6,3655-3650;7-17,3645-3635	x-x,3649-3646[BULt];18-21,3634-3631[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CUCCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN21857_c0_g2_3642_TPlot.pdf
TRINITY_DN21857_c2_g1:371	si_a754	TRINITY_DN21857_c2_g1	360	384	371	-34.60	-23.10	0.667630057803468	15	1-8,384-377;9-18,372-363	x-x,376-373[BULt];19-21,362-360[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	GGUGGACCCGAGGAUCCGGGGUUCA&UGAACCUC----CUUUGGGUUUUUG	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN21857_c2_g1_371_TPlot.pdf
TRINITY_DN2185_c0_g1:2459	si_a783	TRINITY_DN2185_c0_g1	2448	2468	2459	-24.70	-17.50	0.708502024291498	9	2-10,2467-2459;12-18,2457-2451	1-1,2468-2468[UP5];11-11,2458-2458[SIL];19-21,2450-2448[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	CGCUGGAGAACUGGAAGGGUG&AACUCUUCUAUUUUUCUAUUU	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2185_c0_g1_2459_TPlot.pdf
TRINITY_DN2185_c0_g1:3028	si_a138	TRINITY_DN2185_c0_g1	3017	3037	3028	-26.30	-17.20	0.653992395437262	8.5	1-8,3037-3030;11-20,3027-3018	9-10,3029-3028[SIL];21-21,3017-3017[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	CGCGACAAUGAAAGAUUAUUA&UAGUAAUUAAUCGUUGUUGUU	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN2185_c0_g1_3028_TPlot.pdf
TRINITY_DN21875_c2_g1:322	si_a415	TRINITY_DN21875_c2_g1	311	331	322	-18.10	-12.10	0.668508287292818	9.5	3-17,329-315	1-2,331-330[UP5];18-21,314-311[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGUAGUUUAUUUAGAUGUAUG&UUUAUAUUUAAAUAAAUAUAG	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN21875_c2_g1_322_TPlot.pdf
TRINITY_DN21875_c2_g1:40	si_s500	TRINITY_DN21875_c2_g1	29	49	40	-22.80	-17.80	0.780701754385965	6	1-4,49-46;6-19,44-31	5-5,45-45[SIL];20-21,30-29[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	ACUAGAGUUGUUUUGUGUGUG&UAUAAACAAAACAAUUCUAUA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN21875_c2_g1_40_TPlot.pdf
TRINITY_DN21880_c0_g1:1273	si_a404	TRINITY_DN21880_c0_g1	1262	1282	1273	-21.70	-14.20	0.654377880184332	9.5	3-20,1280-1263	1-2,1282-1281[UP5];21-21,1262-1262[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGAGUAUGAGCAAAGUAGUAG&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN21880_c0_g1_1273_TPlot.pdf
TRINITY_DN218_c0_g1:1122	si_s899	TRINITY_DN218_c0_g1	1111	1131	1122	-28.30	-18.70	0.660777385159011	5	1-5,1131-1127;7-12,1125-1120;14-20,1118-1112	6-6,1126-1126[SIL];13-13,1119-1119[SIL];21-21,1111-1111[UP3]	.(((((((.((((((.(((((&))))).)))))).))))))).	UAUUGAAAGUGAGGACAAAGC&GCUUUCUCUUCAAUUUCAAUU	4	0.99999999987842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN218_c0_g1_1122_TPlot.pdf
TRINITY_DN218_c0_g1:229	si_s437	TRINITY_DN218_c0_g1	218	238	229	-19.70	-13.50	0.685279187817259	14.5	6-19,233-220	1-5,238-234[UP5];20-21,219-218[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAUGUGUGAUGUGUGUAUAU&AUAAUUACAUAUUAUAUAUAA	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN218_c0_g1_229_TPlot.pdf
TRINITY_DN218_c0_g1:476	si_a407	TRINITY_DN218_c0_g1	465	486	476	-19.80	-12.90	0.651515151515151	8.5	1-4,486-483;5-17,481-469	x-x,482-482[BULt];18-21,468-465[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	CCAAAAGUAUAAACGAACACGA&UUGU-UUUGUUUAUAUUUAAAU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN218_c0_g1_476_TPlot.pdf
TRINITY_DN218_c0_g1:477	si_a406	TRINITY_DN218_c0_g1	466	487	477	-19.80	-12.90	0.651515151515151	8.5	2-5,486-483;6-18,481-469	1-1,487-487[UP5];x-x,482-482[BULt];19-21,468-466[UP3]	...(((((((((((((.((((.&.))))-)))))))))))))...	CAAAAGUAUAAACGAACACGAG&AUUGU-UUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN218_c0_g1_477_TPlot.pdf
TRINITY_DN218_c0_g1:478	si_a405	TRINITY_DN218_c0_g1	467	488	478	-19.80	-12.90	0.651515151515151	9.5	3-6,486-483;7-19,481-469	1-2,488-487[UP5];x-x,482-482[BULt];20-21,468-467[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	AAAAGUAUAAACGAACACGAGA&AAUUGU-UUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN218_c0_g1_478_TPlot.pdf
TRINITY_DN218_c0_g1:585	si_a353	TRINITY_DN218_c0_g1	574	594	585	-24.00	-16.20	0.675	7	3-17,592-578;19-20,576-575	1-2,594-593[UP5];18-18,577-577[SIL];21-21,574-574[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	AGAACAAAAUGGAAUUGAUCG&AUAUUAAUUCUAUUUUGAUCG	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN218_c0_g1_585_TPlot.pdf
TRINITY_DN218_c0_g1:586	si_a352	TRINITY_DN218_c0_g1	575	595	586	-22.50	-15.80	0.702222222222222	8	4-18,592-578;20-21,576-575	1-3,595-593[UP5];19-19,577-577[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAACAAAAUGGAAUUGAUCGA&AAUAUUAAUUCUAUUUUGAUC	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN218_c0_g1_586_TPlot.pdf
TRINITY_DN218_c0_g1:587	si_a351	TRINITY_DN218_c0_g1	576	596	587	-20.50	-14.70	0.717073170731707	10.5	5-19,592-578	1-4,596-593[UP5];20-21,577-576[UP3]	..(((((((((((((((....&....)))))))))))))))..	AACAAAAUGGAAUUGAUCGAG&AAAUAUUAAUUCUAUUUUGAU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN218_c0_g1_587_TPlot.pdf
TRINITY_DN218_c0_g1:588	si_a350	TRINITY_DN218_c0_g1	577	597	588	-20.30	-14.70	0.724137931034483	11.5	6-20,592-578	1-5,597-593[UP5];21-21,577-577[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACAAAAUGGAAUUGAUCGAGA&AAAAUAUUAAUUCUAUUUUGA	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN218_c0_g1_588_TPlot.pdf
TRINITY_DN218_c0_g1:589	si_a349	TRINITY_DN218_c0_g1	578	598	589	-21.30	-14.70	0.690140845070423	12.5	7-21,592-578	1-6,598-593[UP5]	(((((((((((((((......&......)))))))))))))))	CAAAAUGGAAUUGAUCGAGAU&GAAAAUAUUAAUUCUAUUUUG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN218_c0_g1_589_TPlot.pdf
TRINITY_DN21901_c0_g1:813	si_a868	TRINITY_DN21901_c0_g1	802	822	813	-24.80	-16.20	0.653225806451613	3	1-21,822-802	NA	(((((((((((((((((((((&)))))))))))))))))))))	UGUAGUUGAAUUUUUAAUAAU&AUUAUUAAAGAUUUAGUUGCA	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN21901_c0_g1_813_TPlot.pdf
TRINITY_DN2192_c0_g1:2255	si_s65	TRINITY_DN2192_c0_g1	2244	2264	2255	-26.00	-17.90	0.688461538461538	9	3-16,2262-2249	1-2,2264-2263[UP5];17-21,2248-2244[UP3]	.....((((((((((((((..&..)))))))))))))).....	GCUGCAAAAUGGAAGUUGCCU&UAGCAACUUCUAUUUUUUUUC	3	0.999891632392592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN2192_c0_g1_2255_TPlot.pdf
TRINITY_DN2192_c0_g1:2256	si_s64	TRINITY_DN2192_c0_g1	2245	2265	2256	-24.10	-17.90	0.742738589211618	10	4-17,2262-2249	1-3,2265-2263[UP5];18-21,2248-2245[UP3]	....((((((((((((((...&...))))))))))))))....	CUGCAAAAUGGAAGUUGCCUG&UUAGCAACUUCUAUUUUUUUU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2192_c0_g1_2256_TPlot.pdf
TRINITY_DN2192_c0_g1:2259	si_s61	TRINITY_DN2192_c0_g1	2248	2268	2259	-26.50	-19.00	0.716981132075472	9.5	3-4,2266-2265;7-20,2262-2249	1-2,2268-2267[UP5];5-6,2264-2263[SIL];21-21,2248-2248[UP3]	.((((((((((((((..((..&..))..)))))))))))))).	CAAAAUGGAAGUUGCCUGCAA&AAGUUAGCAACUUCUAUUUUU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN2192_c0_g1_2259_TPlot.pdf
TRINITY_DN2192_c0_g1:2260	si_s60	TRINITY_DN2192_c0_g1	2249	2269	2260	-28.20	-19.00	0.673758865248227	10.5	4-5,2266-2265;8-21,2262-2249	1-3,2269-2267[UP5];6-7,2264-2263[SIL]	((((((((((((((..((...&...))..))))))))))))))	AAAAUGGAAGUUGCCUGCAAA&CAAGUUAGCAACUUCUAUUUU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN2192_c0_g1_2260_TPlot.pdf
TRINITY_DN2192_c0_g1:426	si_a786	TRINITY_DN2192_c0_g1	414	436	426	-26.60	-18.50	0.695488721804511	8.5	1-7,436-430;8-16,428-420;17-21,418-414	x-x,429-429[BULt];x-x,419-419[BULt]	(((((.(((((((((.(((((((&)))))))-)))))))))-)))))	GGAGGUGUAGGAAAGUUGGGAGA&UCUUCUA-UUUUUCUAU-UUUCC	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2192_c0_g1_426_TPlot.pdf
TRINITY_DN2193_c0_g1:1908	si_a143	TRINITY_DN2193_c0_g1	1897	1917	1908	-25.10	-16.40	0.653386454183267	13	6-18,1912-1900	1-5,1917-1913[UP5];19-21,1899-1897[UP3]	...(((((((((((((.....&.....)))))))))))))...	UAAAAGGCAACAACGAGCCAC&AUUAAUCGUUGUUGUUUUAAG	3	0.999999975660948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN2193_c0_g1_1908_TPlot.pdf
TRINITY_DN2193_c0_g1:1909	si_a142	TRINITY_DN2193_c0_g1	1898	1918	1909	-23.50	-16.40	0.697872340425532	14	7-19,1912-1900	1-6,1918-1913[UP5];20-21,1899-1898[UP3]	..(((((((((((((......&......)))))))))))))..	AAAAGGCAACAACGAGCCACA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999647774421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2193_c0_g1_1909_TPlot.pdf
TRINITY_DN2193_c0_g1:1910	si_a141	TRINITY_DN2193_c0_g1	1899	1919	1910	-23.80	-16.40	0.689075630252101	15	8-20,1912-1900	1-7,1919-1913[UP5];21-21,1899-1899[UP3]	.(((((((((((((.......&.......))))))))))))).	AAAGGCAACAACGAGCCACAU&UAAUUAAUCGUUGUUGUUUUA	4	0.999999540968882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2193_c0_g1_1910_TPlot.pdf
TRINITY_DN2193_c0_g3:1288	si_s80	TRINITY_DN2193_c0_g3	1277	1297	1288	-28.20	-18.50	0.656028368794326	10	3-16,1295-1282	1-2,1297-1296[UP5];17-21,1281-1277[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUAUGGAGAGGAGAGAAACU&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2193_c0_g3_1288_TPlot.pdf
TRINITY_DN2193_c0_g3:1291	si_s72	TRINITY_DN2193_c0_g3	1280	1301	1291	-24.10	-18.30	0.759336099585062	9	2-5,1300-1297;6-19,1295-1282	1-1,1301-1301[UP5];x-x,1296-1296[BULt];20-21,1281-1280[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	AUGGAGAGGAGAGAAACUGGAU&UUCUA-UUUUUUUUCUUUCCUU	4	0.999999846289191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2193_c0_g3_1291_TPlot.pdf
TRINITY_DN2193_c0_g4:92	si_s583	TRINITY_DN2193_c0_g4	81	101	92	-24.30	-16.60	0.683127572016461	12	6-19,96-83	1-5,101-97[UP5];20-21,82-81[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCUUUAUCCAUGGUUUAGUAU&UAAAAAAAUCAUGGAUAAAUC	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s583_TRINITY_DN2193_c0_g4_92_TPlot.pdf
TRINITY_DN21947_c0_g1:1417	si_s738	TRINITY_DN21947_c0_g1	1406	1428	1417	-37.60	-24.80	0.659574468085106	8	1-7,1428-1422;8-13,1419-1414;15-17,1412-1410;19-21,1408-1406	x-x,1421-1420[BULt];14-14,1413-1413[SIL];18-18,1409-1409[SIL]	(((.(((.((((((..(((((((&)))))))--)))))).))).)))	AGGGCAACCUGUUCGCGCCCGUC&GACGGGU--GAAUAGAUUGACCU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s738_TRINITY_DN21947_c0_g1_1417_TPlot.pdf
TRINITY_DN21947_c0_g1:2097	si_a506	TRINITY_DN21947_c0_g1	2082	2106	2097	-33.40	-22.70	0.679640718562874	12.5	2-12,2105-2095;13-17,2091-2087;18-19,2085-2084	1-1,2106-2106[UP5];x-x,2094-2092[BULt];x-x,2086-2086[BULt];20-21,2083-2082[UP3]	..((.(((((...(((((((((((.&.)))))))))))---)))))-))..	CGGCGAUUCCGACGAGGAGGACGAC&UUCGUCUUCCUU---GGAAU-GUAA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN21947_c0_g1_2097_TPlot.pdf
TRINITY_DN21947_c0_g1:2105	si_a498	TRINITY_DN21947_c0_g1	2094	2116	2105	-33.50	-25.00	0.746268656716418	10	3-9,2114-2108;10-21,2105-2094	1-2,2116-2115[UP5];x-x,2107-2106[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	CGAGGAGGACGACGAGAACGGAG&UGUCGUUUU--UCGUCUUCCUUG	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN21947_c0_g1_2105_TPlot.pdf
TRINITY_DN21947_c0_g1:2108	si_a497	TRINITY_DN21947_c0_g1	2095	2117	2108	-32.00	-22.60	0.70625	12	4-10,2114-2108;11-21,2105-2095	1-3,2117-2115[UP5];x-x,2107-2106[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	GAGGAGGACGACGAGAACGGAGA&AUGUCGUUUU--UCGUCUUCCUU	2	0.999820472317368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN21947_c0_g1_2108_TPlot.pdf
TRINITY_DN21947_c0_g1:2120	si_s808	TRINITY_DN21947_c0_g1	2109	2129	2120	-28.60	-20.30	0.70979020979021	11	4-17,2126-2113	1-3,2129-2127[UP5];18-21,2112-2109[UP3]	....((((((((((((((...&...))))))))))))))....	GAACGGAGAGGUGACGAAAAG&AUCUUCGUUACCUUUUCUUAA	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN21947_c0_g1_2120_TPlot.pdf
TRINITY_DN21947_c0_g1:2121	si_s807	TRINITY_DN21947_c0_g1	2110	2130	2121	-28.90	-20.30	0.70242214532872	12	5-18,2126-2113	1-4,2130-2127[UP5];19-21,2112-2110[UP3]	...((((((((((((((....&....))))))))))))))...	AACGGAGAGGUGACGAAAAGG&UAUCUUCGUUACCUUUUCUUA	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN21947_c0_g1_2121_TPlot.pdf
TRINITY_DN21947_c0_g1:2123	si_s805	TRINITY_DN21947_c0_g1	2112	2132	2123	-28.60	-20.30	0.70979020979021	14	7-20,2126-2113	1-6,2132-2127[UP5];21-21,2112-2112[UP3]	.((((((((((((((......&......)))))))))))))).	CGGAGAGGUGACGAAAAGGCC&UUUAUCUUCGUUACCUUUUCU	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN21947_c0_g1_2123_TPlot.pdf
TRINITY_DN21947_c0_g1:2124	si_s804	TRINITY_DN21947_c0_g1	2113	2133	2124	-27.90	-20.00	0.716845878136201	14.5	8-21,2126-2113	1-7,2133-2127[UP5]	((((((((((((((.......&.......))))))))))))))	GGAGAGGUGACGAAAAGGCCG&UUUUAUCUUCGUUACCUUUUC	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN21947_c0_g1_2124_TPlot.pdf
TRINITY_DN21947_c0_g1:2125	si_s803	TRINITY_DN21947_c0_g1	2114	2134	2125	-26.00	-17.60	0.676923076923077	16.5	9-21,2126-2114	1-8,2134-2127[UP5]	(((((((((((((........&........)))))))))))))	GAGAGGUGACGAAAAGGCCGA&AUUUUAUCUUCGUUACCUUUU	2	0.999997808924038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN21947_c0_g1_2125_TPlot.pdf
TRINITY_DN21948_c0_g1:2730	si_a758	TRINITY_DN21948_c0_g1	2717	2739	2730	-34.00	-23.30	0.685294117647059	6.5	1-2,2739-2738;4-15,2736-2725;16-21,2722-2717	3-3,2737-2737[SIL];x-x,2724-2723[BULt]	((((((..((((((((((((.((&)).))))))))))))--))))))	CAAUCACUGGGACUCAAAGGUGG&CCUCCUUUGGGUUUU--UGAUUG	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN21948_c0_g1_2730_TPlot.pdf
TRINITY_DN21948_c0_g1:3293	si_s5	TRINITY_DN21948_c0_g1	3282	3301	3293	-21.70	-14.60	0.672811059907834	10	1-8,3301-3294;11-19,3292-3284	9-10,3293-3293[AILq];20-21,3283-3282[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	AGGGUAGUAGUU-GUGAUGUA&UAUAUUACUUAUUAUUACUAU	4	0.999971501982316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN21948_c0_g1_3293_TPlot.pdf
TRINITY_DN21948_c0_g1:3448	si_a64	TRINITY_DN21948_c0_g1	3437	3457	3448	-29.40	-19.80	0.673469387755102	8.5	1-8,3457-3450;10-13,3448-3445;16-18,3442-3440	9-9,3449-3449[SIL];14-15,3444-3443[SIL];19-21,3439-3437[UP3]	...(((..((((.((((((((&)))))))).))))..)))...	GGCCGAGGUGAAUGGAGCGAG&CUCGCUUCUUUCAAAUUGUUU	4	0.999951258254274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN21948_c0_g1_3448_TPlot.pdf
TRINITY_DN21948_c0_g1:3449	si_a63	TRINITY_DN21948_c0_g1	3438	3458	3449	-30.20	-20.00	0.662251655629139	8.5	2-9,3457-3450;11-14,3448-3445;17-19,3442-3440	1-1,3458-3458[UP5];10-10,3449-3449[SIL];15-16,3444-3443[SIL];20-21,3439-3438[UP3]	..(((..((((.((((((((.&.)))))))).))))..)))..	GCCGAGGUGAAUGGAGCGAGG&ACUCGCUUCUUUCAAAUUGUU	2	0.993610737462659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN21948_c0_g1_3449_TPlot.pdf
TRINITY_DN21948_c0_g1:3453	si_a59	TRINITY_DN21948_c0_g1	3442	3465	3453	-34.00	-22.10	0.65	12	1-5,3465-3461;6-13,3457-3450;15-18,3448-3445	x-x,3460-3458[BULt];14-14,3449-3449[SIL];19-21,3444-3442[UP3]	...((((.((((((((...(((((&)))))---)))))))).))))...	AGGUGAAUGGAGCGAGGUAUCGGC&GUCGA---CUCGCUUCUUUCAAAU	2	0.999336734711078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN21948_c0_g1_3453_TPlot.pdf
TRINITY_DN21948_c0_g1:3679	si_s18	TRINITY_DN21948_c0_g1	3668	3687	3679	-27.50	-17.90	0.650909090909091	8	1-5,3687-3683;7-17,3682-3672	6-6,x-x[BULq];18-21,3671-3668[UP3]	....(((((((((((-(((((&))))).)))))))))))....	CCAAGCAAUCAAUGU-GUAGU&AUUACUAUAUUGAUUGCAACU	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN21948_c0_g1_3679_TPlot.pdf
TRINITY_DN21948_c0_g1:4279	si_a305	TRINITY_DN21948_c0_g1	4268	4289	4279	-32.80	-23.80	0.725609756097561	8.5	4-9,4286-4281;10-21,4279-4268	1-3,4289-4287[UP5];x-x,4280-4280[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	GGAUAGAUCCAAUGUGAAUGAA&AAGAUUCGC-UUGGAUUUAUCC	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN21948_c0_g1_4279_TPlot.pdf
TRINITY_DN21948_c0_g1:4417	si_a448	TRINITY_DN21948_c0_g1	4406	4426	4417	-25.50	-21.70	0.850980392156863	7	4-21,4423-4406	1-3,4426-4424[UP5]	((((((((((((((((((...&...))))))))))))))))))	GUGUGACGACAAUUAUCUGUA&AUGAGAUAAUUGUUGUUAUAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN21948_c0_g1_4417_TPlot.pdf
TRINITY_DN21948_c0_g1:4419	si_a446	TRINITY_DN21948_c0_g1	4408	4429	4419	-25.50	-20.90	0.819607843137255	5.5	1-5,4429-4425;6-21,4423-4408	x-x,4424-4424[BULt]	((((((((((((((((.(((((&)))))-))))))))))))))))	GUGACGACAAUUAUCUGUAUGU&AUAUG-AGAUAAUUGUUGUUAU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN21948_c0_g1_4419_TPlot.pdf
TRINITY_DN21958_c0_g1:1269	si_a3	TRINITY_DN21958_c0_g1	1258	1278	1269	-31.30	-21.40	0.68370607028754	4.5	1-9,1278-1270;11-12,1268-1267;14-21,1265-1258	10-10,1269-1269[SIL];13-13,1266-1266[SIL]	((((((((.((.(((((((((&))))))))).)).))))))))	AGGCUUUUCCUACAGUUUCAA&UUGAAAUUGAAGAGAAAGCCU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN21958_c0_g1_1269_TPlot.pdf
TRINITY_DN21958_c0_g1:640	si_a447	TRINITY_DN21958_c0_g1	629	649	640	-25.70	-17.70	0.688715953307393	9	1-6,649-644;8-18,642-632	7-7,643-643[SIL];19-21,631-629[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UACAGCAGCGGUUACCUCGUA&UAUGAGAUAAUUGUUGUUAUA	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN21958_c0_g1_640_TPlot.pdf
TRINITY_DN21958_c0_g1:964	si_s147	TRINITY_DN21958_c0_g1	953	973	964	-33.10	-23.70	0.716012084592145	4	1-13,973-961;15-20,959-954	14-14,960-960[SIL];21-21,953-953[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UUGGACUGCUUUUGGGUUUUU&AAAAACCCAAAGGAGGUUCAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN21958_c0_g1_964_TPlot.pdf
TRINITY_DN21958_c0_g1:968	si_s143	TRINITY_DN21958_c0_g1	957	977	968	-33.10	-24.60	0.743202416918429	3	1-17,977-961;19-21,959-957	18-18,960-960[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	ACUGCUUUUGGGUUUUUGGUU&AAUCAAAAACCCAAAGGAGGU	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s143_TRINITY_DN21958_c0_g1_968_TPlot.pdf
TRINITY_DN21958_c0_g1:969	si_s142	TRINITY_DN21958_c0_g1	957	978	969	-34.00	-26.60	0.782352941176471	3.5	1-18,978-961;19-20,959-958	x-x,960-960[BULt];21-21,957-957[UP3]	.((.((((((((((((((((((&))))))))))))))))))-)).	ACUGCUUUUGGGUUUUUGGUUG&CAAUCAAAAACCCAAAGG-AGG	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s142_TRINITY_DN21958_c0_g1_969_TPlot.pdf
TRINITY_DN21958_c0_g1:970	si_s141	TRINITY_DN21958_c0_g1	958	979	970	-32.60	-26.30	0.806748466257669	3	1-19,979-961;20-21,959-958	x-x,960-960[BULt]	((.(((((((((((((((((((&)))))))))))))))))))-))	CUGCUUUUGGGUUUUUGGUUGG&UCAAUCAAAAACCCAAAGG-AG	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s141_TRINITY_DN21958_c0_g1_970_TPlot.pdf
TRINITY_DN21958_c0_g1:971	si_s140	TRINITY_DN21958_c0_g1	960	980	971	-31.10	-27.10	0.871382636655949	3.5	1-20,980-961	21-21,960-960[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GCUUUUGGGUUUUUGGUUGGU&AUCAAUCAAAAACCCAAAGGA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s140_TRINITY_DN21958_c0_g1_971_TPlot.pdf
TRINITY_DN2196_c0_g1:2326	si_a406	TRINITY_DN2196_c0_g1	2315	2335	2326	-19.80	-14.30	0.722222222222222	11	1-8,2335-2328;10-17,2326-2319	9-9,2327-2327[SIL];18-21,2318-2315[UP3]	....((((((((.((((((((&)))))))).))))))))....	GGAUGAUGUAGAGGAAGCAGU&AUUGUUUUGUUUAUAUUUAAA	4	0.999999949580118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2196_c0_g1_2326_TPlot.pdf
TRINITY_DN2196_c0_g1:2329	si_a403	TRINITY_DN2196_c0_g1	2318	2338	2329	-22.00	-14.50	0.659090909090909	12.5	4-11,2335-2328;13-20,2326-2319	1-3,2338-2336[UP5];12-12,2327-2327[SIL];21-21,2318-2318[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UGAUGUAGAGGAAGCAGUAGA&AGAAUUGUUUUGUUUAUAUUU	2	0.999999999697115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN2196_c0_g1_2329_TPlot.pdf
TRINITY_DN2196_c0_g1:2334	si_a784	TRINITY_DN2196_c0_g1	2319	2343	2334	-24.70	-17.20	0.696356275303644	15	2-10,2342-2334;11-18,2329-2322	1-1,2343-2343[UP5];x-x,2333-2330[BULt];19-21,2321-2319[UP3]	...((((((((....(((((((((.&.)))))))))----))))))))...	GAUGUAGAGGAAGCAGUAGAAGAGG&ACUCUUCUAU----UUUUCUAUUUU	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2196_c0_g1_2334_TPlot.pdf
TRINITY_DN2196_c0_g1:2335	si_a783	TRINITY_DN2196_c0_g1	2320	2344	2335	-24.70	-17.20	0.696356275303644	15.5	3-11,2342-2334;12-19,2329-2322	1-2,2344-2343[UP5];x-x,2333-2330[BULt];20-21,2321-2320[UP3]	..((((((((....(((((((((..&..)))))))))----))))))))..	AUGUAGAGGAAGCAGUAGAAGAGGA&AACUCUUCUAU----UUUUCUAUUU	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2196_c0_g1_2335_TPlot.pdf
TRINITY_DN2196_c0_g1:2376	si_a786	TRINITY_DN2196_c0_g1	2363	2389	2376	-26.60	-18.00	0.676691729323308	14.5	1-8,2389-2382;9-18,2377-2368;19-21,2365-2363	x-x,2381-2378[BULt];x-x,2367-2366[BULt]	(((..((((((((((....((((((((&))))))))----))))))))))--)))	GGAAGAAGUAGAGAAAGCAGUGGAGGA&UCUUCUAU----UUUUCUAUUU--UCC	4	0.999999999990978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2196_c0_g1_2376_TPlot.pdf
TRINITY_DN2196_c0_g1:2391	si_s88	TRINITY_DN2196_c0_g1	2376	2401	2391	-34.80	-23.40	0.672413793103448	8.5	1-6,2401-2396;7-16,2394-2385;17-20,2380-2377	x-x,2395-2395[BULt];x-x,2384-2381[BULt];21-21,2376-2376[UP3]	.((((....((((((((((.((((((&))))))-))))))))))----)))).	AAAGCAGUGGAGGAAGAAGUAGAGGA&UCCUUU-CUUCUUCUUC----GCUUC	4	0.999999999999917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2196_c0_g1_2391_TPlot.pdf
TRINITY_DN2196_c0_g1:2393	si_s86	TRINITY_DN2196_c0_g1	2381	2403	2393	-32.90	-24.00	0.729483282674772	5.5	1-8,2403-2396;9-18,2394-2385;19-21,2383-2381	x-x,2395-2395[BULt];x-x,2384-2384[BULt]	(((.((((((((((.((((((((&))))))))-))))))))))-)))	AGUGGAGGAAGAAGUAGAGGAAG&UUUCCUUU-CUUCUUCUUC-GCU	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2196_c0_g1_2393_TPlot.pdf
TRINITY_DN2196_c0_g1:2394	si_s85	TRINITY_DN2196_c0_g1	2383	2404	2394	-33.80	-23.40	0.692307692307692	7.5	2-9,2403-2396;10-19,2394-2385	1-1,2404-2404[UP5];x-x,2395-2395[BULt];20-21,2384-2383[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	UGGAGGAAGAAGUAGAGGAAGC&CUUUCCUUU-CUUCUUCUUCGC	2	0.999998582666172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2196_c0_g1_2394_TPlot.pdf
TRINITY_DN2196_c0_g1:2396	si_s84	TRINITY_DN2196_c0_g1	2384	2405	2396	-32.30	-23.40	0.724458204334365	8.5	3-10,2403-2396;11-20,2394-2385	1-2,2405-2404[UP5];x-x,2395-2395[BULt];21-21,2384-2384[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	GGAGGAAGAAGUAGAGGAAGCA&UCUUUCCUUU-CUUCUUCUUCG	3	0.999999750333462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2196_c0_g1_2396_TPlot.pdf
TRINITY_DN2196_c0_g1:2398	si_s82	TRINITY_DN2196_c0_g1	2386	2407	2398	-28.90	-19.60	0.678200692041523	11.5	5-12,2403-2396;13-21,2394-2386	1-4,2407-2404[UP5];x-x,2395-2395[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	AGGAAGAAGUAGAGGAAGCAGU&UUUCUUUCCUUU-CUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2196_c0_g1_2398_TPlot.pdf
TRINITY_DN2196_c0_g1:2772	si_a323	TRINITY_DN2196_c0_g1	2761	2781	2772	-26.80	-20.20	0.753731343283582	7.5	1-5,2781-2777;8-21,2774-2761	6-7,2776-2775[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	AAGGAAUAGAGAGGAGAUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN2196_c0_g1_2772_TPlot.pdf
TRINITY_DN2196_c0_g1:2774	si_s71	TRINITY_DN2196_c0_g1	2762	2783	2774	-25.70	-20.60	0.801556420233463	6.5	2-16,2782-2768;17-21,2766-2762	1-1,2783-2783[UP5];x-x,2767-2767[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	AGGAAUAGAGAGGAGAUGGAAA&CUUCUAUUUUUUUUCU-UUCCU	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2196_c0_g1_2774_TPlot.pdf
TRINITY_DN2197_c0_g1:3184	si_s893	TRINITY_DN2197_c0_g1	3173	3193	3184	-29.10	-20.40	0.701030927835051	9	3-10,3191-3184;11-15,3182-3178;17-21,3177-3173	1-2,3193-3192[UP5];x-x,3183-3183[BULt];16-16,x-x[BULq]	(((((-(((((.((((((((..&..))))))))-))))).)))))	GGUUG-AGAGAGGAGCCUGUGA&AAAUAGGCUU-UCUCUUCAAUU	2	0.987642480539365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN2197_c0_g1_3184_TPlot.pdf
TRINITY_DN2197_c0_g1:3185	si_s892	TRINITY_DN2197_c0_g1	3174	3194	3185	-29.50	-20.10	0.68135593220339	10.5	4-11,3191-3184;12-16,3182-3178;18-21,3177-3174	1-3,3194-3192[UP5];x-x,3183-3183[BULt];17-17,x-x[BULq]	((((-(((((.((((((((...&...))))))))-))))).))))	GUUG-AGAGAGGAGCCUGUGAA&UAAAUAGGCUU-UCUCUUCAAU	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN2197_c0_g1_3185_TPlot.pdf
TRINITY_DN2197_c0_g1:3208	si_a407	TRINITY_DN2197_c0_g1	3197	3217	3208	-19.80	-12.90	0.651515151515151	10	2-7,3216-3211;9-18,3209-3200	1-1,3217-3217[UP5];8-8,3210-3210[SIL];19-21,3199-3197[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	GGCUGGGUGUAAAGAAGGCAU&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2197_c0_g1_3208_TPlot.pdf
TRINITY_DN2197_c0_g2:1303	si_a237	TRINITY_DN2197_c0_g2	1285	1312	1303	-34.80	-23.50	0.675287356321839	9.5	1-11,1312-1302;12-14,1300-1298;15-20,1291-1286	x-x,1301-1301[BULt];x-x,1297-1292[BULt];21-21,1285-1285[UP3]	.((((((......(((.(((((((((((&)))))))))))-)))------)))))).	AGGGGGAUGGGUAUCGAAAUUGAUUAUG&UAUAAUCAAUU-CGA------UCCCCCG	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a237_TRINITY_DN2197_c0_g2_1303_TPlot.pdf
TRINITY_DN2197_c0_g2:1304	si_a236	TRINITY_DN2197_c0_g2	1286	1313	1304	-35.00	-23.80	0.68	10	2-12,1312-1302;13-15,1300-1298;16-21,1291-1286	1-1,1313-1313[UP5];x-x,1301-1301[BULt];x-x,1297-1292[BULt]	((((((......(((.(((((((((((.&.)))))))))))-)))------))))))	GGGGGAUGGGUAUCGAAAUUGAUUAUGA&CUAUAAUCAAUU-CGA------UCCCCC	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN2197_c0_g2_1304_TPlot.pdf
TRINITY_DN2197_c0_g2:1630	si_a75	TRINITY_DN2197_c0_g2	1619	1639	1630	-21.30	-14.30	0.671361502347418	9	4-8,1636-1632;10-20,1630-1620	1-3,1639-1637[UP5];9-9,1631-1631[SIL];21-21,1619-1619[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	AUGAUGAUGAAAUACAAUCUA&CAAAUUGUUUUUCAUUAUUAA	2	0.999999829166825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2197_c0_g2_1630_TPlot.pdf
TRINITY_DN2197_c0_g2:1800	si_s69	TRINITY_DN2197_c0_g2	1790	1809	1800	-23.40	-15.30	0.653846153846154	6	3-15,1807-1795;17-20,1794-1791	1-2,1809-1808[UP5];16-16,x-x[BULq];21-21,1790-1790[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	UGAAG-AAGAAAAUAGAAGCU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2197_c0_g2_1800_TPlot.pdf
TRINITY_DN2197_c0_g2:1801	si_s68	TRINITY_DN2197_c0_g2	1791	1810	1801	-23.10	-15.30	0.662337662337662	7	4-16,1807-1795;18-21,1794-1791	1-3,1810-1808[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	GAAG-AAGAAAAUAGAAGCUA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2197_c0_g2_1801_TPlot.pdf
TRINITY_DN21988_c0_g1:639	si_a767	TRINITY_DN21988_c0_g1	621	648	639	-30.10	-20.60	0.684385382059801	10.5	1-10,648-639;11-18,635-628;19-21,623-621	x-x,638-636[BULt];x-x,627-624[BULt]	(((....((((((((...((((((((((&))))))))))---))))))))----)))	GAGAAACUUGGAUCAUCUAUCAAAAACC&GGUUUUUGAU---UGAUUCAA----CUC	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN21988_c0_g1_639_TPlot.pdf
TRINITY_DN21988_c0_g1:642	si_a764	TRINITY_DN21988_c0_g1	628	651	642	-28.90	-19.40	0.671280276816609	8.5	4-13,648-639;14-21,635-628	1-3,651-649[UP5];x-x,638-636[BULt]	((((((((...((((((((((...&...))))))))))---))))))))	UUGGAUCAUCUAUCAAAAACCACG&UUGGGUUUUUGAU---UGAUUCAA	2	0.999831303933513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN21988_c0_g1_642_TPlot.pdf
TRINITY_DN2198_c0_g1:604	si_s315	TRINITY_DN2198_c0_g1	592	613	604	-31.60	-21.90	0.693037974683544	6.5	2-10,612-604;12-13,602-601;14-19,599-594	1-1,613-613[UP5];11-11,603-603[SIL];x-x,600-600[BULt];20-21,593-592[UP3]	..((((((.((.(((((((((.&.))))))))).))-))))))..	UAGUAGCAUAGCAGGACAGAAG&AUUCUGUCCUUCU-UGUUACAA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN2198_c0_g1_604_TPlot.pdf
TRINITY_DN2199_c0_g1:1431	si_s617	TRINITY_DN2199_c0_g1	1421	1440	1431	-28.30	-19.50	0.68904593639576	9.5	5-14,1436-1427;16-20,1426-1422	1-4,1440-1437[UP5];15-15,x-x[BULq];21-21,1421-1421[UP3]	.(((((-((((((((((....&....)))))))))).))))).	UAAGGA-CGCUUGGAUUGAGA&UUUAAAUCCAAGCGAUCUUUU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN2199_c0_g1_1431_TPlot.pdf
TRINITY_DN2199_c0_g1:1438	si_s610	TRINITY_DN2199_c0_g1	1427	1447	1438	-27.20	-20.10	0.738970588235294	9	2-6,1446-1442;8-10,1440-1438;12-21,1436-1427	1-1,1447-1447[UP5];7-7,1441-1441[SIL];11-11,1437-1437[SIL]	((((((((((.(((.(((((.&.))))).))).))))))))))	CGCUUGGAUUGAGAUGGGGUG&AAUCUUUUUUAAAUCCAAGCG	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN2199_c0_g1_1438_TPlot.pdf
TRINITY_DN2199_c0_g1:2825	si_a755	TRINITY_DN2199_c0_g1	2814	2835	2825	-34.90	-23.60	0.67621776504298	6.5	1-3,2835-2833;4-14,2831-2821;16-20,2819-2815	x-x,2832-2832[BULt];15-15,2820-2820[SIL];21-21,2814-2814[UP3]	.(((((.(((((((((((.(((&)))-))))))))))).))))).	ACAAAGUCCUGAAGGAGGAUUC&GAA-CCUCCUUUGGGUUUUUGA	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN2199_c0_g1_2825_TPlot.pdf
TRINITY_DN2199_c0_g1:3433	si_s83	TRINITY_DN2199_c0_g1	3421	3442	3433	-30.90	-22.40	0.724919093851133	6.5	2-16,3441-3427;17-20,3425-3422	1-1,3442-3442[UP5];x-x,3426-3426[BULt];21-21,3421-3421[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	UAGGACGGAGGGAAGGAAAGGG&UUCUUUCCUUUCUUCU-UCUUC	3	0.999999999673675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2199_c0_g1_3433_TPlot.pdf
TRINITY_DN2199_c0_g2:199	si_s87	TRINITY_DN2199_c0_g2	188	212	199	-32.90	-22.90	0.696048632218845	14.5	1-6,212-207;7-12,202-197;14-21,195-188	x-x,206-203[BULt];13-13,196-196[SIL]	((((((((.((((((....((((((&))))))----)))))).))))))))	GAGCGAGGCGGGGGAGGCUGAGGAG&UUCCUU----UCUUCUUCUUCGCUU	3	0.999999999994191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2199_c0_g2_199_TPlot.pdf
TRINITY_DN2199_c0_g2:260	si_s376	TRINITY_DN2199_c0_g2	247	271	260	-42.50	-27.90	0.656470588235294	9.5	2-9,270-263;10-13,260-257;14-16,255-253;17-20,251-248	1-1,271-271[UP5];x-x,262-261[BULt];x-x,256-256[BULt];x-x,252-252[BULt];21-21,247-247[UP3]	.((((.(((.((((..((((((((.&.))))))))--))))-)))-)))).	CGGGGCCGGUGCACUGGCGAGCGAA&AUCGCUCGC--GUGU-CCG-CCUUA	3	0.999993631342644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN2199_c0_g2_260_TPlot.pdf
TRINITY_DN2199_c0_g2:362	si_a404	TRINITY_DN2199_c0_g2	351	371	362	-21.70	-15.00	0.691244239631336	11.5	1-14,371-358	15-21,357-351[UP3]	.......((((((((((((((&)))))))))))))).......	GGCGAGCAGACGAAGCGGUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999998707314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2199_c0_g2_362_TPlot.pdf
TRINITY_DN2199_c0_g2:365	si_a401	TRINITY_DN2199_c0_g2	354	374	365	-22.60	-15.00	0.663716814159292	13	4-17,371-358	1-3,374-372[UP5];18-21,357-354[UP3]	....((((((((((((((...&...))))))))))))))....	GAGCAGACGAAGCGGUUCGAG&AUAGAAUUGUUUUGUUUAUAU	4	0.99999999996012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2199_c0_g2_365_TPlot.pdf
TRINITY_DN2199_c0_g2:367	si_a399	TRINITY_DN2199_c0_g2	356	376	367	-22.60	-15.00	0.663716814159292	15	6-19,371-358	1-5,376-372[UP5];20-21,357-356[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCAGACGAAGCGGUUCGAGGA&AUAUAGAAUUGUUUUGUUUAU	4	0.999999998106834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2199_c0_g2_367_TPlot.pdf
TRINITY_DN2199_c0_g2:368	si_a398	TRINITY_DN2199_c0_g2	357	377	368	-22.40	-15.00	0.669642857142857	15.5	7-20,371-358	1-6,377-372[UP5];21-21,357-357[UP3]	.((((((((((((((......&......)))))))))))))).	CAGACGAAGCGGUUCGAGGAU&AAUAUAGAAUUGUUUUGUUUA	3	0.999999990012321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2199_c0_g2_368_TPlot.pdf
TRINITY_DN2199_c0_g2:369	si_a397	TRINITY_DN2199_c0_g2	358	379	369	-24.00	-16.82	0.700833333333333	11.5	1-4,379-376;8-21,371-358	5-7,375-372[AILt]	((((((((((((((....((((&))))-...))))))))))))))	AGACGAAGCGGUUCGAGGAUUC&GAAU-AUAGAAUUGUUUUGUUU	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN2199_c0_g2_369_TPlot.pdf
TRINITY_DN2199_c0_g2:439	si_s69	TRINITY_DN2199_c0_g2	427	448	439	-23.40	-15.70	0.670940170940171	10.5	3-8,446-441;11-16,438-433;17-21,431-427	1-2,448-447[UP5];9-10,440-439[SIL];x-x,432-432[BULt]	(((((.((((((..((((((..&..))))))..))))))-)))))	GAGAGCAGGAAAUUUGGAAGGG&AACUUCUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2199_c0_g2_439_TPlot.pdf
TRINITY_DN2199_c0_g2:660	si_a305	TRINITY_DN2199_c0_g2	649	669	660	-32.80	-24.10	0.734756097560976	7.5	2-17,668-653	1-1,669-669[UP5];18-21,652-649[UP3]	....((((((((((((((((.&.))))))))))))))))....	AACCAGAUCCGGGCGAAUCUA&AAGAUUCGCUUGGAUUUAUCC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN2199_c0_g2_660_TPlot.pdf
TRINITY_DN2199_c0_g2:662	si_a303	TRINITY_DN2199_c0_g2	651	671	662	-28.40	-24.10	0.848591549295775	9	4-19,668-653	1-3,671-669[UP5];20-21,652-651[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCAGAUCCGGGCGAAUCUACU&AAAAGAUUCGCUUGGAUUUAU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN2199_c0_g2_662_TPlot.pdf
TRINITY_DN2199_c0_g2:663	si_a302	TRINITY_DN2199_c0_g2	652	672	663	-28.20	-24.10	0.854609929078014	9.5	5-20,668-653	1-4,672-669[UP5];21-21,652-652[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAGAUCCGGGCGAAUCUACUG&AAAAAGAUUCGCUUGGAUUUA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN2199_c0_g2_663_TPlot.pdf
TRINITY_DN2199_c0_g2:664	si_a301	TRINITY_DN2199_c0_g2	653	673	664	-27.80	-23.90	0.859712230215827	10.5	6-21,668-653	1-5,673-669[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAUCCGGGCGAAUCUACUGA&AAAAAAGAUUCGCUUGGAUUU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN2199_c0_g2_664_TPlot.pdf
TRINITY_DN2199_c0_g2:665	si_a300	TRINITY_DN2199_c0_g2	654	674	665	-28.20	-23.20	0.822695035460993	12.5	7-21,668-654	1-6,674-669[UP5]	(((((((((((((((......&......)))))))))))))))	GAUCCGGGCGAAUCUACUGAC&UAAAAAAGAUUCGCUUGGAUU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN2199_c0_g2_665_TPlot.pdf
TRINITY_DN2199_c0_g2:666	si_a299	TRINITY_DN2199_c0_g2	655	675	666	-28.30	-22.10	0.780918727915194	14	8-21,668-655	1-7,675-669[UP5]	((((((((((((((.......&.......))))))))))))))	AUCCGGGCGAAUCUACUGACA&UUAAAAAAGAUUCGCUUGGAU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN2199_c0_g2_666_TPlot.pdf
TRINITY_DN2199_c0_g2:667	si_a298	TRINITY_DN2199_c0_g2	656	676	667	-28.10	-20.90	0.743772241992882	16	9-21,668-656	1-8,676-669[UP5]	(((((((((((((........&........)))))))))))))	UCCGGGCGAAUCUACUGACAC&UUUAAAAAAGAUUCGCUUGGA	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN2199_c0_g2_667_TPlot.pdf
TRINITY_DN2199_c0_g2:668	si_a297	TRINITY_DN2199_c0_g2	657	677	668	-27.20	-18.90	0.694852941176471	18	10-21,668-657	1-9,677-669[UP5]	((((((((((((.........&.........))))))))))))	CCGGGCGAAUCUACUGACACU&AUUUAAAAAAGAUUCGCUUGG	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN2199_c0_g2_668_TPlot.pdf
TRINITY_DN2199_c0_g2:787	si_s520	TRINITY_DN2199_c0_g2	776	799	787	-24.00	-16.52	0.688333333333333	15	1-6,799-794;9-21,788-776	7-8,793-789[AILt]	(((((((((((((.....((((((&))))))---..)))))))))))))	GGAUGAUUUCGGAGACACGGGAGU&AUUCUU---AAUUCGAAAUCAUUU	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN2199_c0_g2_787_TPlot.pdf
TRINITY_DN2199_c0_g2:788	si_s519	TRINITY_DN2199_c0_g2	777	800	788	-24.40	-16.02	0.65655737704918	15.5	2-7,799-794;10-21,788-777	1-1,800-800[UP5];8-9,793-789[AILt]	((((((((((((.....((((((.&.))))))---..))))))))))))	GAUGAUUUCGGAGACACGGGAGUC&UAUUCUU---AAUUCGAAAUCAUU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN2199_c0_g2_788_TPlot.pdf
TRINITY_DN2199_c0_g2:789	si_a337	TRINITY_DN2199_c0_g2	777	799	789	-30.80	-20.30	0.659090909090909	8	1-6,799-794;7-10,792-789;11-16,787-782;18-21,780-777	x-x,793-793[BULt];x-x,788-788[BULt];17-17,781-781[SIL]	((((.((((((.((((.((((((&))))))-))))-)))))).))))	GAUGAUUUCGGAGACACGGGAGU&AUUCCU-UGUC-CCGAAAAUAUU	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN2199_c0_g2_789_TPlot.pdf
TRINITY_DN2199_c0_g2:940	si_a499	TRINITY_DN2199_c0_g2	929	948	940	-35.20	-24.50	0.696022727272727	8.5	1-5,948-944;8-10,942-940;12-21,938-929	6-7,943-943[AILq];11-11,939-939[SIL]	((((((((((.(((.-(((((&)))))..))).))))))))))	CUAGGGAGGAGGAGC-ACGAC&GUCGUUUUUCGUCUUCCUUGG	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN2199_c0_g2_940_TPlot.pdf
TRINITY_DN2199_c0_g3:2017	si_a78	TRINITY_DN2199_c0_g3	2006	2026	2017	-22.30	-16.40	0.73542600896861	8.5	1-17,2026-2010	18-21,2009-2006[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAUGUAGUAAUGAAGGACGGU&AUUGUUUUUCAUUAUUAAGAA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN2199_c0_g3_2017_TPlot.pdf
TRINITY_DN2199_c0_g3:251	si_s96	TRINITY_DN2199_c0_g3	236	262	251	-37.20	-24.40	0.655913978494624	8.5	1-7,262-256;8-17,253-244;18-21,239-236	x-x,255-254[BULt];x-x,243-240[BULt]	((((....((((((((((..(((((((&)))))))--))))))))))----))))	UUCAAGACAUCCGAAGCGCAAAGAAGA&UCUUCUU--CGCUUCGGAU----UGGA	2	0.997609809439789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN2199_c0_g3_251_TPlot.pdf
TRINITY_DN2199_c0_g3:252	si_s95	TRINITY_DN2199_c0_g3	241	263	252	-36.30	-24.20	0.666666666666667	8	2-8,262-256;9-18,253-244	1-1,263-263[UP5];x-x,255-254[BULt];19-21,243-241[UP3]	...((((((((((..(((((((.&.)))))))--))))))))))...	GACAUCCGAAGCGCAAAGAAGAU&UUCUUCUU--CGCUUCGGAUUGG	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN2199_c0_g3_252_TPlot.pdf
TRINITY_DN2199_c0_g3:253	si_s94	TRINITY_DN2199_c0_g3	242	265	253	-35.50	-24.20	0.68169014084507	8	1-2,265-264;3-9,262-256;10-19,253-244	x-x,263-263[BULt];x-x,255-254[BULt];20-21,243-242[UP3]	..((((((((((..(((((((.((&))-)))))))--))))))))))..	ACAUCCGAAGCGCAAAGAAGAUAG&CU-UCUUCUU--CGCUUCGGAUUG	2	0.99811317359439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2199_c0_g3_253_TPlot.pdf
TRINITY_DN2199_c0_g3:256	si_s93	TRINITY_DN2199_c0_g3	243	266	256	-34.80	-25.80	0.741379310344828	7	1-3,266-264;4-10,262-256;11-20,253-244	x-x,263-263[BULt];x-x,255-254[BULt];21-21,243-243[UP3]	.((((((((((..(((((((.(((&)))-)))))))--)))))))))).	CAUCCGAAGCGCAAAGAAGAUAGA&UCU-UCUUCUU--CGCUUCGGAUU	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2199_c0_g3_256_TPlot.pdf
TRINITY_DN2199_c0_g3:257	si_s92	TRINITY_DN2199_c0_g3	244	267	257	-34.90	-26.20	0.750716332378224	6.5	1-4,267-264;5-11,262-256;12-21,253-244	x-x,263-263[BULt];x-x,255-254[BULt]	((((((((((..(((((((.((((&))))-)))))))--))))))))))	AUCCGAAGCGCAAAGAAGAUAGAG&UUCU-UCUUCUU--CGCUUCGGAU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2199_c0_g3_257_TPlot.pdf
TRINITY_DN2199_c0_g3:258	si_s91	TRINITY_DN2199_c0_g3	245	268	258	-34.70	-25.60	0.737752161383285	7.5	1-5,268-264;6-12,262-256;13-21,253-245	x-x,263-263[BULt];x-x,255-254[BULt]	(((((((((..(((((((.(((((&)))))-)))))))--)))))))))	UCCGAAGCGCAAAGAAGAUAGAGG&UUUCU-UCUUCUU--CGCUUCGGA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2199_c0_g3_258_TPlot.pdf
TRINITY_DN2199_c0_g3:259	si_s90	TRINITY_DN2199_c0_g3	246	269	259	-35.30	-23.80	0.674220963172805	7	2-6,268-264;7-13,262-256;14-21,253-246	1-1,269-269[UP5];x-x,263-263[BULt];x-x,255-254[BULt]	((((((((..(((((((.(((((.&.)))))-)))))))--))))))))	CCGAAGCGCAAAGAAGAUAGAGGU&CUUUCU-UCUUCUU--CGCUUCGG	2	0.999999899966703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2199_c0_g3_259_TPlot.pdf
TRINITY_DN2199_c0_g3:261	si_s69	TRINITY_DN2199_c0_g3	248	270	261	-23.40	-16.30	0.696581196581197	6	2-16,269-255;17-17,253-253;18-21,251-248	1-1,270-270[UP5];x-x,254-254[BULt];x-x,252-252[BULt]	((((.(.(((((((((((((((.&.)))))))))))))))-)-))))	GAAGCGCAAAGAAGAUAGAGGUC&AACUUCUAUUUUUUUU-C-UUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2199_c0_g3_261_TPlot.pdf
TRINITY_DN2199_c0_g3:262	si_s68	TRINITY_DN2199_c0_g3	248	271	262	-23.10	-15.10	0.653679653679654	9	3-17,269-255;18-21,251-248	1-2,271-270[UP5];x-x,254-252[BULt]	((((...(((((((((((((((..&..)))))))))))))))---))))	GAAGCGCAAAGAAGAUAGAGGUCA&CAACUUCUAUUUUUUUU---CUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2199_c0_g3_262_TPlot.pdf
TRINITY_DN2199_c0_g4:1511	si_a69	TRINITY_DN2199_c0_g4	1500	1520	1511	-24.00	-16.40	0.683333333333333	9.5	2-9,1519-1512;11-19,1510-1502	1-1,1520-1520[UP5];10-10,1511-1511[SIL];20-21,1501-1500[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UGGAAGAACAGGUUGGGAGGU&UUCUUUCAAAUUGUUUUUCAU	4	0.999999988827076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2199_c0_g4_1511_TPlot.pdf
TRINITY_DN219_c0_g1:1377	si_a627	TRINITY_DN219_c0_g1	1366	1388	1377	-29.50	-19.40	0.657627118644068	12	1-7,1388-1382;8-14,1379-1373	x-x,1381-1380[BULt];15-21,1372-1366[UP3]	.......(((((((..(((((((&)))))))--))))))).......	UCACAGACGACGUAGAAUACGCC&GGCGUAU--UAUGUCGAUUUUUU	3	0.999999326777845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN219_c0_g1_1377_TPlot.pdf
TRINITY_DN219_c0_g1:1511	si_a147	TRINITY_DN219_c0_g1	1499	1520	1511	-30.40	-20.62	0.678289473684211	7.5	1-14,1520-1507;18-21,1502-1499	15-17,1506-1503[AILt]	((((....((((((((((((((&))))))))))))))-...))))	UGAUGAUGAAGACGACGACGAU&AUCGUUGUUGUUUU-AAGGUCA	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN219_c0_g1_1511_TPlot.pdf
TRINITY_DN219_c0_g1:1512	si_a146	TRINITY_DN219_c0_g1	1500	1521	1512	-29.70	-19.52	0.657239057239057	8	2-15,1520-1507;19-21,1502-1500	1-1,1521-1521[UP5];16-18,1506-1503[AILt]	(((....((((((((((((((.&.))))))))))))))-...)))	GAUGAUGAAGACGACGACGAUG&AAUCGUUGUUGUUUU-AAGGUC	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN219_c0_g1_1512_TPlot.pdf
TRINITY_DN219_c0_g1:1515	si_a143	TRINITY_DN219_c0_g1	1504	1524	1515	-25.10	-17.80	0.709163346613546	12	5-18,1520-1507	1-4,1524-1521[UP5];19-21,1506-1504[UP3]	...((((((((((((((....&....))))))))))))))...	AUGAAGACGACGACGAUGAUG&AUUAAUCGUUGUUGUUUUAAG	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN219_c0_g1_1515_TPlot.pdf
TRINITY_DN219_c0_g1:1516	si_a142	TRINITY_DN219_c0_g1	1505	1525	1516	-23.50	-17.80	0.757446808510638	13	6-19,1520-1507	1-5,1525-1521[UP5];20-21,1506-1505[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGAAGACGACGACGAUGAUGA&AAUUAAUCGUUGUUGUUUUAA	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN219_c0_g1_1516_TPlot.pdf
TRINITY_DN219_c0_g1:1517	si_a141	TRINITY_DN219_c0_g1	1506	1526	1517	-23.80	-17.80	0.747899159663866	14	7-20,1520-1507	1-6,1526-1521[UP5];21-21,1506-1506[UP3]	.((((((((((((((......&......)))))))))))))).	GAAGACGACGACGAUGAUGAU&UAAUUAAUCGUUGUUGUUUUA	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN219_c0_g1_1517_TPlot.pdf
TRINITY_DN219_c0_g1:1518	si_a140	TRINITY_DN219_c0_g1	1507	1527	1518	-25.20	-17.40	0.69047619047619	14.5	8-21,1520-1507	1-7,1527-1521[UP5]	((((((((((((((.......&.......))))))))))))))	AAGACGACGACGAUGAUGAUG&GUAAUUAAUCGUUGUUGUUUU	2	0.993610737462659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN219_c0_g1_1518_TPlot.pdf
TRINITY_DN219_c0_g1:435	si_a79	TRINITY_DN219_c0_g1	423	444	435	-22.20	-15.50	0.698198198198198	6	1-2,444-443;4-15,441-430;16-20,428-424	3-3,442-442[SIL];x-x,429-429[BULt];21-21,423-423[UP3]	.(((((.((((((((((((.((&)).))))))))))))-))))).	AUUCUUCAAUGAUGAAGAAGAA&UUGUUUUUCAUUAUU-AAGAAA	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN219_c0_g1_435_TPlot.pdf
TRINITY_DN219_c0_g1:436	si_a78	TRINITY_DN219_c0_g1	424	445	436	-22.30	-15.30	0.68609865470852	5.5	2-3,444-443;5-16,441-430;17-21,428-424	1-1,445-445[UP5];4-4,442-442[SIL];x-x,429-429[BULt]	(((((.((((((((((((.((.&.)).))))))))))))-)))))	UUCUUCAAUGAUGAAGAAGAAG&AUUGUUUUUCAUUAUU-AAGAA	3	0.999994692112501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN219_c0_g1_436_TPlot.pdf
TRINITY_DN219_c0_g1:437	si_a77	TRINITY_DN219_c0_g1	425	446	437	-22.20	-14.50	0.653153153153153	7.5	3-4,444-443;6-17,441-430;18-21,428-425	1-2,446-445[UP5];5-5,442-442[SIL];x-x,429-429[BULt]	((((.((((((((((((.((..&..)).))))))))))))-))))	UCUUCAAUGAUGAAGAAGAAGA&AAUUGUUUUUCAUUAUU-AAGA	3	0.999999999616306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN219_c0_g1_437_TPlot.pdf
TRINITY_DN219_c0_g1:998	si_a762	TRINITY_DN219_c0_g1	987	1007	998	-29.70	-19.60	0.65993265993266	9	2-16,1006-992	1-1,1007-1007[UP5];17-21,991-987[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAGAAAAUCAAGGACCCAGAA&CUUUGGGUUUUUGAUUGAUUC	3	0.999999996443008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN219_c0_g1_998_TPlot.pdf
TRINITY_DN219_c1_g2:3846	si_s257	TRINITY_DN219_c1_g2	3835	3856	3846	-28.30	-19.20	0.678445229681979	10	2-9,3855-3848;10-16,3846-3840	1-1,3856-3856[UP5];x-x,3847-3847[BULt];17-21,3839-3835[UP3]	.....(((((((.((((((((.&.))))))))-))))))).....	GACACUGAGUGAUUAUGUCGGA&CCCGAUAUA-UUACUCAAAAAA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s257_TRINITY_DN219_c1_g2_3846_TPlot.pdf
TRINITY_DN219_c1_g2:4851	si_s87	TRINITY_DN219_c1_g2	4838	4860	4851	-32.90	-24.80	0.753799392097265	8.5	1-14,4860-4847;15-19,4844-4840	x-x,4846-4845[BULt];20-21,4839-4838[UP3]	..(((((..((((((((((((((&))))))))))))))--)))))..	AUGCGAGUCGAAGGAGGAGGGGA&UUCCUUUCUUCUUC--UUCGCUU	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN219_c1_g2_4851_TPlot.pdf
TRINITY_DN219_c1_g2:4979	si_a606	TRINITY_DN219_c1_g2	4968	4988	4979	-32.60	-21.70	0.665644171779141	10.5	2-7,4987-4982;10-19,4979-4970	1-1,4988-4988[UP5];8-9,4981-4980[SIL];20-21,4969-4968[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	UUGUCGGUUGGGCGUGCGGGU&UUUCGCAAUUCCAAUCGACUA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN219_c1_g2_4979_TPlot.pdf
TRINITY_DN219_c1_g2:5285	si_a498	TRINITY_DN219_c1_g2	5274	5301	5285	-33.50	-22.40	0.66865671641791	20.5	2-6,5300-5296;7-9,5288-5286;11-21,5284-5274	1-1,5301-5301[UP5];x-x,5295-5289[BULt];10-10,5285-5285[SIL]	(((((((((((.(((.......(((((.&.)))))-------))).)))))))))))	CAAGGAGGACGCGAAGAAGCUCGCGGCU&UGUCGU-------UUUUCGUCUUCCUUG	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN219_c1_g2_5285_TPlot.pdf
TRINITY_DN219_c1_g2:6274	si_a78	TRINITY_DN219_c1_g2	6263	6283	6274	-22.30	-16.50	0.739910313901345	7	2-17,6282-6267	1-1,6283-6283[UP5];18-21,6266-6263[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAACUAAUAAUGAAGAGCAAC&AUUGUUUUUCAUUAUUAAGAA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN219_c1_g2_6274_TPlot.pdf
TRINITY_DN21_c0_g1:622	si_a21	TRINITY_DN21_c0_g1	611	634	622	-24.30	-16.20	0.666666666666667	12	1-5,634-630;6-19,626-613	x-x,629-627[BULt];20-21,612-611[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	GAGGAAUUAAAGAUGAAAAAUGGG&CCUAU---UUAUUUUUAGUUCUAA	2	0.999693409243789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN21_c0_g1_622_TPlot.pdf
TRINITY_DN21_c0_g1:623	si_a20	TRINITY_DN21_c0_g1	612	635	623	-26.70	-18.00	0.674157303370786	11.5	1-6,635-630;7-20,626-613	x-x,629-627[BULt];21-21,612-612[UP3]	.((((((((((((((...((((((&))))))---)))))))))))))).	AGGAAUUAAAGAUGAAAAAUGGGU&GCCUAU---UUAUUUUUAGUUCUA	2	0.999428753246935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN21_c0_g1_623_TPlot.pdf
TRINITY_DN21_c0_g1:624	si_a19	TRINITY_DN21_c0_g1	613	636	624	-27.00	-18.40	0.681481481481481	11	1-7,636-630;8-21,626-613	x-x,629-627[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GGAAUUAAAGAUGAAAAAUGGGUU&AGCCUAU---UUAUUUUUAGUUCU	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN21_c0_g1_624_TPlot.pdf
TRINITY_DN21_c0_g1:625	si_a18	TRINITY_DN21_c0_g1	614	637	625	-26.30	-17.60	0.669201520912548	11	2-8,636-630;9-21,626-614	1-1,637-637[UP5];x-x,629-627[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	GAAUUAAAGAUGAAAAAUGGGUUG&AAGCCUAU---UUAUUUUUAGUUC	2	0.998634806198616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN21_c0_g1_625_TPlot.pdf
TRINITY_DN21_c0_g1:630	si_s68	TRINITY_DN21_c0_g1	619	640	630	-23.10	-15.30	0.662337662337662	7.5	1-4,640-637;6-15,634-625;17-21,623-619	5-5,636-635[AILt];16-16,624-624[SIL]	(((((.((((((((((..((((&))))-.)))))))))).)))))	AAAGAUGAAAAAUGGGUUGUUG&CAAC-UUCUAUUUUUUUUCUUU	0	0.765044678995345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN21_c0_g1_630_TPlot.pdf
TRINITY_DN2200_c0_g1:1186	si_a321	TRINITY_DN2200_c0_g1	1175	1194	1186	-26.70	-17.40	0.651685393258427	9.5	3-6,1192-1189;8-20,1188-1176	1-2,1194-1193[UP5];7-7,x-x[BULq];21-21,1175-1175[UP3]	.(((((((((((((-((((..&..)))).))))))))))))).	CGAGUGGAAGGAUC-UGGAAG&UAUCCAUGAUUUUUUUAUUCC	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN2200_c0_g1_1186_TPlot.pdf
TRINITY_DN22018_c0_g2:1060	si_a318	TRINITY_DN22018_c0_g2	1049	1069	1060	-22.50	-16.50	0.733333333333333	7	1-12,1069-1058;14-18,1056-1052	13-13,1057-1057[SIL];19-21,1051-1049[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UUCGAGGGUUCAUGGAUGAAU&AUUUAUCCAUGAUUUUUUUAU	1	0.0967550442181289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN22018_c0_g2_1060_TPlot.pdf
TRINITY_DN22018_c0_g2:1063	si_a315	TRINITY_DN22018_c0_g2	1052	1072	1063	-27.00	-21.50	0.796296296296296	5	1-15,1072-1058;17-21,1056-1052	16-16,1057-1057[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GAGGGUUCAUGGAUGAAUUCA&UGGAUUUAUCCAUGAUUUUUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN22018_c0_g2_1063_TPlot.pdf
TRINITY_DN22018_c0_g2:1065	si_a313	TRINITY_DN22018_c0_g2	1054	1074	1065	-28.70	-20.20	0.70383275261324	9	3-17,1072-1058	1-2,1074-1073[UP5];18-21,1057-1054[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGGUUCAUGGAUGAAUUCAUG&CUUGGAUUUAUCCAUGAUUUU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN22018_c0_g2_1065_TPlot.pdf
TRINITY_DN22018_c0_g2:1067	si_a311	TRINITY_DN22018_c0_g2	1056	1077	1067	-32.70	-21.80	0.666666666666667	8	1-2,1077-1076;3-3,1074-1074;5-19,1072-1058	x-x,1075-1075[BULt];4-4,1073-1073[SIL];20-21,1057-1056[UP3]	..(((((((((((((((.(.((&))-).)))))))))))))))..	GUUCAUGGAUGAAUUCAUGUCG&CG-CUUGGAUUUAUCCAUGAUU	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN22018_c0_g2_1067_TPlot.pdf
TRINITY_DN2203_c0_g1:1158	si_a465	TRINITY_DN2203_c0_g1	1143	1167	1158	-20.90	-14.20	0.679425837320574	14	3-10,1165-1158;11-21,1153-1143	1-2,1167-1166[UP5];x-x,1157-1154[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	CGAUGAUUACAGGAAUGUUGUAUCU&AUAUAUAAUA----UGUAAUUAUUG	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN2203_c0_g1_1158_TPlot.pdf
TRINITY_DN2203_c0_g1:1413	si_a747	TRINITY_DN2203_c0_g1	1401	1422	1413	-41.30	-31.50	0.76271186440678	4.5	1-15,1422-1408;16-19,1406-1403;21-21,1401-1401	x-x,1407-1407[BULt];20-20,1402-1402[SIL]	(.((((.(((((((((((((((&)))))))))))))))-)))).)	CGGAAGAGAGGUUUAUGGUCAG&CUGGCCAUGAACCUC-CUUUGG	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN2203_c0_g1_1413_TPlot.pdf
TRINITY_DN2203_c0_g1:1683	si_a452	TRINITY_DN2203_c0_g1	1672	1692	1683	-23.00	-18.60	0.808695652173913	6	1-17,1692-1676	18-21,1675-1672[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACCCAUAUAAUAACAAUUGUC&GAUAAUUGUUGUUAUAUAUAA	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN2203_c0_g1_1683_TPlot.pdf
TRINITY_DN2203_c0_g1:1687	si_a448	TRINITY_DN2203_c0_g1	1676	1696	1687	-25.50	-19.30	0.756862745098039	3.5	1-3,1696-1694;5-21,1692-1676	4-4,1693-1693[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	AUAUAAUAACAAUUGUCACAU&AUGAGAUAAUUGUUGUUAUAU	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN2203_c0_g1_1687_TPlot.pdf
TRINITY_DN2203_c0_g1:1688	si_a447	TRINITY_DN2203_c0_g1	1677	1697	1688	-25.70	-18.20	0.708171206225681	4.5	2-4,1696-1694;6-21,1692-1677	1-1,1697-1697[UP5];5-5,1693-1693[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	UAUAAUAACAAUUGUCACAUC&UAUGAGAUAAUUGUUGUUAUA	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN2203_c0_g1_1688_TPlot.pdf
TRINITY_DN2203_c0_g1:1689	si_a446	TRINITY_DN2203_c0_g1	1678	1698	1689	-25.50	-16.80	0.658823529411765	6.5	3-5,1696-1694;7-21,1692-1678	1-2,1698-1697[UP5];6-6,1693-1693[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AUAAUAACAAUUGUCACAUCU&AUAUGAGAUAAUUGUUGUUAU	2	0.997119207794828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN2203_c0_g1_1689_TPlot.pdf
TRINITY_DN22040_c0_g1:1000	si_s700	TRINITY_DN22040_c0_g1	989	1009	1000	-29.20	-19.10	0.654109589041096	9	1-10,1009-1000;12-17,998-993	11-11,999-999[SIL];18-21,992-989[UP3]	....((((((.((((((((((&)))))))))).))))))....	AAUACACUGAAGAAUCGGCUG&UAGUCGAUUUAUUAGUGAACA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN22040_c0_g1_1000_TPlot.pdf
TRINITY_DN22040_c0_g1:1001	si_s699	TRINITY_DN22040_c0_g1	990	1010	1001	-28.60	-19.20	0.671328671328671	9.5	2-11,1009-1000;13-18,998-993	1-1,1010-1010[UP5];12-12,999-999[SIL];19-21,992-990[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	AUACACUGAAGAAUCGGCUGC&UUAGUCGAUUUAUUAGUGAAC	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN22040_c0_g1_1001_TPlot.pdf
TRINITY_DN22040_c0_g1:1002	si_s698	TRINITY_DN22040_c0_g1	991	1011	1002	-27.00	-19.20	0.711111111111111	9.5	3-12,1009-1000;14-19,998-993	1-2,1011-1010[UP5];13-13,999-999[SIL];20-21,992-991[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	UACACUGAAGAAUCGGCUGCC&AUUAGUCGAUUUAUUAGUGAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN22040_c0_g1_1002_TPlot.pdf
TRINITY_DN22040_c0_g1:1003	si_s697	TRINITY_DN22040_c0_g1	992	1012	1003	-26.90	-19.20	0.713754646840149	10	4-13,1009-1000;15-20,998-993	1-3,1012-1010[UP5];14-14,999-999[SIL];21-21,992-992[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	ACACUGAAGAAUCGGCUGCCU&AAUUAGUCGAUUUAUUAGUGA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN22040_c0_g1_1003_TPlot.pdf
TRINITY_DN22040_c0_g1:1004	si_s696	TRINITY_DN22040_c0_g1	993	1013	1004	-26.30	-19.20	0.730038022813688	11	5-14,1009-1000;16-21,998-993	1-4,1013-1010[UP5];15-15,999-999[SIL]	((((((.((((((((((....&....)))))))))).))))))	CACUGAAGAAUCGGCUGCCUC&UAAUUAGUCGAUUUAUUAGUG	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN22040_c0_g1_1004_TPlot.pdf
TRINITY_DN22040_c0_g1:698	si_a630	TRINITY_DN22040_c0_g1	685	708	698	-25.80	-17.00	0.65891472868217	8.5	1-5,708-704;7-12,701-696;13-21,693-685	6-6,703-702[AILt];x-x,695-694[BULt]	(((((((((..((((((..(((((&)))))-.))))))--)))))))))	UCAAAAGAACUUCGACAAAAAUAC&GUAUU-AUGUCGA--UUUUUUUGA	3	0.999999946397659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN22040_c0_g1_698_TPlot.pdf
TRINITY_DN2204_c0_g1:1226	si_s82	TRINITY_DN2204_c0_g1	1215	1236	1226	-28.90	-20.40	0.705882352941176	8	2-8,1235-1229;9-11,1227-1225;13-21,1223-1215	1-1,1236-1236[UP5];x-x,1228-1228[BULt];12-12,1224-1224[SIL]	(((((((((.(((.(((((((.&.)))))))-))).)))))))))	AAGGAGGAGCGAGCGAAAGAGG&UUUCUUUC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2204_c0_g1_1226_TPlot.pdf
TRINITY_DN2204_c0_g1:2150	si_a327	TRINITY_DN2204_c0_g1	2139	2158	2150	-28.40	-18.78	0.661267605633803	14	2-7,2157-2152;14-21,2146-2139	1-1,2158-2158[UP5];8-13,2151-2147[AILq]	((((((((.....-((((((.&.))))))......))))))))	GGACAAGGUGAAU-GAAGUCG&UGAUUUUUUUAUUCCUUGUCC	3	0.999999996584146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2204_c0_g1_2150_TPlot.pdf
TRINITY_DN2204_c0_g1:2455	si_s94	TRINITY_DN2204_c0_g1	2444	2469	2455	-35.50	-25.60	0.72112676056338	16.5	1-8,2469-2462;9-18,2456-2447	x-x,2461-2457[BULt];19-21,2446-2444[UP3]	...((((((((((.....((((((((&))))))))-----))))))))))...	UCCUCCGGAGCGACUUUCGGAGGGAG&CUUCUUCU-----UCGCUUCGGAUUG	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2204_c0_g1_2455_TPlot.pdf
TRINITY_DN2204_c0_g1:2456	si_s93	TRINITY_DN2204_c0_g1	2445	2470	2456	-34.80	-27.20	0.781609195402299	15.5	1-9,2470-2462;10-19,2456-2447	x-x,2461-2457[BULt];20-21,2446-2445[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	CCUCCGGAGCGACUUUCGGAGGGAGA&UCUUCUUCU-----UCGCUUCGGAUU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2204_c0_g1_2456_TPlot.pdf
TRINITY_DN2204_c0_g1:2463	si_s91	TRINITY_DN2204_c0_g1	2447	2472	2463	-34.70	-28.80	0.829971181556196	14.5	1-11,2472-2462;12-21,2456-2447	x-x,2461-2457[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	UCCGGAGCGACUUUCGGAGGGAGAGA&UUUCUUCUUCU-----UCGCUUCGGA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2204_c0_g1_2463_TPlot.pdf
TRINITY_DN2204_c0_g1:2465	si_s89	TRINITY_DN2204_c0_g1	2449	2474	2465	-35.30	-23.80	0.674220963172805	12	3-13,2472-2462;14-21,2456-2449	1-2,2474-2473[UP5];x-x,2461-2457[BULt]	((((((((.....(((((((((((..&..)))))))))))-----))))))))	CGGAGCGACUUUCGGAGGGAGAGAUC&CCUUUCUUCUUCU-----UCGCUUCG	4	0.999999999998878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2204_c0_g1_2465_TPlot.pdf
TRINITY_DN2205_c0_g1:1263	si_s83	TRINITY_DN2205_c0_g1	1252	1272	1263	-30.90	-20.70	0.669902912621359	4.5	1-6,1272-1267;8-18,1265-1255;20-21,1253-1252	7-7,1266-1266[SIL];19-19,1254-1254[SIL]	((.(((((((((((.((((((&)))))).))))))))))).))	GAUGAAGGAGGAAGCAAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2205_c0_g1_1263_TPlot.pdf
TRINITY_DN2205_c0_g1:1374	si_a69	TRINITY_DN2205_c0_g1	1362	1383	1374	-24.00	-15.80	0.658333333333333	7.5	2-12,1382-1372;13-20,1370-1363	1-1,1383-1383[UP5];x-x,1371-1371[BULt];21-21,1362-1362[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UUGGGGGAUAAAUUUGAAGGAU&UUCUUUCAAAUU-GUUUUUCAU	3	0.999999999999565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2205_c0_g1_1374_TPlot.pdf
TRINITY_DN2205_c0_g1:1456	si_s79	TRINITY_DN2205_c0_g1	1445	1465	1456	-26.20	-19.30	0.736641221374046	5	2-15,1464-1451;17-20,1449-1446	1-1,1465-1465[UP5];16-16,1450-1450[SIL];21-21,1445-1445[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	UGGAAAAGAGGAAAGAGAAAC&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2205_c0_g1_1456_TPlot.pdf
TRINITY_DN2205_c0_g1:1457	si_s78	TRINITY_DN2205_c0_g1	1446	1466	1457	-26.20	-19.30	0.736641221374046	6	3-16,1464-1451;18-21,1449-1446	1-2,1466-1465[UP5];17-17,1450-1450[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GGAAAAGAGGAAAGAGAAACG&UUUUUUUCUUUCCUUUCUUCU	2	0.999999997423749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2205_c0_g1_1457_TPlot.pdf
TRINITY_DN2205_c0_g1:1460	si_s75	TRINITY_DN2205_c0_g1	1449	1469	1460	-24.00	-16.00	0.666666666666667	12.5	6-19,1464-1451	1-5,1469-1465[UP5];20-21,1450-1449[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAGAGGAAAGAGAAACGCAA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2205_c0_g1_1460_TPlot.pdf
TRINITY_DN2205_c0_g1:1974	si_s897	TRINITY_DN2205_c0_g1	1964	1984	1974	-31.30	-21.40	0.68370607028754	6.5	2-8,1983-1977;9-13,1975-1971;16-20,1969-1965	1-1,1984-1984[UP5];x-x,1976-1976[BULt];14-15,1970-1970[AILq];21-21,1964-1964[UP3]	.(((((.-(((((.(((((((.&.)))))))-)))))..))))).	CUGAGAG-GAAGAGGAAAGCCG&AGGCUUUC-UCUUCAAUUUCAA	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN2205_c0_g1_1974_TPlot.pdf
TRINITY_DN2205_c0_g1:1975	si_s896	TRINITY_DN2205_c0_g1	1965	1985	1975	-31.60	-21.10	0.667721518987342	7.5	3-9,1983-1977;10-14,1975-1971;17-21,1969-1965	1-2,1985-1984[UP5];x-x,1976-1976[BULt];15-16,1970-1970[AILq]	(((((.-(((((.(((((((..&..)))))))-)))))..)))))	UGAGAG-GAAGAGGAAAGCCGA&UAGGCUUUC-UCUUCAAUUUCA	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN2205_c0_g1_1975_TPlot.pdf
TRINITY_DN2205_c0_g1:1976	si_s82	TRINITY_DN2205_c0_g1	1966	1984	1976	-28.90	-19.00	0.657439446366782	10	4-9,1981-1976;12-21,1975-1966	1-3,1984-1982[UP5];10-11,x-x[BULq]	((((((((((--((((((...&...))))))..))))))))))	GAGAGGAAGA--GGAAAGCCG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2205_c0_g1_1976_TPlot.pdf
TRINITY_DN2205_c0_g1:79	si_a784	TRINITY_DN2205_c0_g1	67	88	79	-24.70	-17.50	0.708502024291498	5.5	3-16,86-73;17-21,71-67	1-2,88-87[UP5];x-x,72-72[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AAAGUAAGAAAAAUGGAAGACA&ACUCUUCUAUUUUUCU-AUUUU	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2205_c0_g1_79_TPlot.pdf
TRINITY_DN22060_c1_g1:2200	si_s72	TRINITY_DN22060_c1_g1	2189	2209	2200	-24.10	-16.30	0.676348547717842	13	6-20,2204-2190	1-5,2209-2205[UP5];21-21,2189-2189[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGGGAAAGGAGAAAGAAAUAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN22060_c1_g1_2200_TPlot.pdf
TRINITY_DN22060_c1_g1:2263	si_a188	TRINITY_DN22060_c1_g1	2249	2272	2263	-32.00	-21.02	0.656875	10.5	2-13,2271-2260;16-19,2254-2251	1-1,2272-2272[UP5];14-15,2259-2255[AILt];20-21,2250-2249[UP3]	..((((.....((((((((((((.&.))))))))))))---..))))..	ACGUGAUGAGAGGGGAGAGGUAUA&AAUAUCUUUCCCU---GUUCACUA	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN22060_c1_g1_2263_TPlot.pdf
TRINITY_DN22060_c1_g1:821	si_a788	TRINITY_DN22060_c1_g1	810	830	821	-24.80	-16.50	0.665322580645161	6	1-13,830-818;15-18,816-813	14-14,817-817[SIL];19-21,812-810[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AUAGAAACUAGAAAGAUGGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN22060_c1_g1_821_TPlot.pdf
TRINITY_DN22066_c0_g1:1653	si_s77	TRINITY_DN22066_c0_g1	1642	1662	1653	-25.50	-20.70	0.811764705882353	5.5	1-15,1662-1648;18-21,1645-1642	16-17,1647-1646[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	GAAGCUGGGAAAGAGGAGAAA&UUUUUUUUCUUUCCUUUCUUC	3	0.999948760723328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN22066_c0_g1_1653_TPlot.pdf
TRINITY_DN22066_c0_g2:1337	si_a156	TRINITY_DN22066_c0_g2	1326	1344	1337	-28.90	-20.30	0.70242214532872	8.5	1-5,1344-1340;8-21,1339-1326	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	UGGAUGGGUUGACU--GGAAC&GUUUUAAGGUCAAUCUAUUCA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a156_TRINITY_DN22066_c0_g2_1337_TPlot.pdf
TRINITY_DN22066_c0_g2:1338	si_a155	TRINITY_DN22066_c0_g2	1327	1345	1338	-28.90	-19.60	0.678200692041523	8.5	1-6,1345-1340;9-21,1339-1327	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	GGAUGGGUUGACU--GGAACA&UGUUUUAAGGUCAAUCUAUUC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a155_TRINITY_DN22066_c0_g2_1338_TPlot.pdf
TRINITY_DN22066_c0_g2:557	si_s210	TRINITY_DN22066_c0_g2	546	568	557	-35.90	-24.70	0.688022284122563	7.5	1-5,568-564;6-16,561-551;18-21,549-546	x-x,563-562[BULt];17-17,550-550[SIL]	((((.(((((((((((..(((((&)))))--))))))))))).))))	CGGUCUUGAAUACAGCGUUGGUA&UACCA--GUUGUGUUCGAAACCG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN22066_c0_g2_557_TPlot.pdf
TRINITY_DN22066_c0_g3:1146	si_a192	TRINITY_DN22066_c0_g3	1135	1155	1146	-31.90	-21.90	0.686520376175549	4.5	1-8,1155-1148;10-12,1146-1144;15-21,1141-1135	9-9,1147-1147[SIL];13-14,1143-1142[SIL]	(((((((..(((.((((((((&)))))))).)))..)))))))	UUAUUGGGAAACUGGGAAAGA&UCUUUCCCUGUUCACUAAUAA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN22066_c0_g3_1146_TPlot.pdf
TRINITY_DN22066_c0_g3:1153	si_s77	TRINITY_DN22066_c0_g3	1139	1162	1153	-25.50	-17.20	0.674509803921569	9.5	2-15,1161-1148;16-20,1144-1140	1-1,1162-1162[UP5];x-x,1147-1145[BULt];21-21,1139-1139[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	UGGGAAACUGGGAAAGAGGAGAAU&UUUUUUUUCUUUCCU---UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN22066_c0_g3_1153_TPlot.pdf
TRINITY_DN22066_c0_g3:1155	si_s75	TRINITY_DN22066_c0_g3	1141	1164	1155	-24.00	-16.90	0.704166666666667	12	4-17,1161-1148;18-21,1144-1141	1-3,1164-1162[UP5];x-x,1147-1145[BULt]	((((...((((((((((((((...&...))))))))))))))---))))	GGAAACUGGGAAAGAGGAGAAUUA&UAUUUUUUUUCUUUCCU---UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN22066_c0_g3_1155_TPlot.pdf
TRINITY_DN22066_c0_g3:1201	si_a863	TRINITY_DN22066_c0_g3	1189	1210	1201	-24.40	-17.92	0.734426229508197	8.5	1-11,1210-1200;15-21,1195-1189	12-14,1199-1196[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	CUGAAUCAUUGGGUAAUUGGAU&AUCCAAUUAUU-AAAGAUUUAG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN22066_c0_g3_1201_TPlot.pdf
TRINITY_DN22066_c0_g3:1202	si_a862	TRINITY_DN22066_c0_g3	1190	1211	1202	-22.70	-15.82	0.696916299559471	8.5	2-12,1210-1200;16-21,1195-1190	1-1,1211-1211[UP5];13-15,1199-1196[AILt]	((((((....(((((((((((.&.)))))))))))-...))))))	UGAAUCAUUGGGUAAUUGGAUG&AAUCCAAUUAUU-AAAGAUUUA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN22066_c0_g3_1202_TPlot.pdf
TRINITY_DN22066_c0_g3:1203	si_a861	TRINITY_DN22066_c0_g3	1191	1212	1203	-22.30	-14.62	0.655605381165919	9	3-13,1210-1200;17-21,1195-1191	1-2,1212-1211[UP5];14-16,1199-1196[AILt]	(((((....(((((((((((..&..)))))))))))-...)))))	GAAUCAUUGGGUAAUUGGAUGG&AAAUCCAAUUAUU-AAAGAUUU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN22066_c0_g3_1203_TPlot.pdf
TRINITY_DN2206_c0_g1:1081	si_a814	TRINITY_DN2206_c0_g1	1069	1090	1081	-32.90	-24.10	0.732522796352584	4	2-2,1089-1089;4-15,1087-1076;16-21,1074-1069	1-1,1090-1090[UP5];3-3,1088-1088[SIL];x-x,1075-1075[BULt]	((((((.((((((((((((.(.&.).))))))))))))-))))))	UUUCCUCUUCUUCUUCUUCACA&AGCGAAGAAGAAGAA-AGGAAA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN2206_c0_g1_1081_TPlot.pdf
TRINITY_DN2206_c1_g1:180	si_s122	TRINITY_DN2206_c1_g1	168	192	180	-28.30	-18.62	0.657950530035336	12.5	1-9,192-184;12-18,178-172;19-21,170-168	10-11,183-179[AILt];x-x,171-171[BULt]	(((.(((((((.....(((((((((&)))))))))---..)))))))-)))	GAUCUCAGCUCCUGUGCUGUUUUUC&GAAAAAUAG---AAGAGUUGA-AUC	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN2206_c1_g1_180_TPlot.pdf
TRINITY_DN2207_c0_g1:163	si_a471	TRINITY_DN2207_c0_g1	152	172	163	-21.10	-14.00	0.663507109004739	8	5-13,168-160;15-21,158-152	1-4,172-169[UP5];14-14,159-159[SIL]	(((((((.(((((((((....&....))))))))).)))))))	AUAUAACUAUAAUUACAAUUA&AAUAUGUAAUUAUUGUUAUAU	4	0.999999794783401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2207_c0_g1_163_TPlot.pdf
TRINITY_DN22081_c0_g1:205	si_a761	TRINITY_DN22081_c0_g1	194	214	205	-30.10	-20.80	0.691029900332226	6	1-3,214-212;5-11,210-204;13-21,202-194	4-4,211-211[SIL];12-12,203-203[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	AAUCAGUCGCAAACUCACAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.999957816069636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN22081_c0_g1_205_TPlot.pdf
TRINITY_DN22091_c0_g1:953	si_s2	TRINITY_DN22091_c0_g1	942	962	953	-20.50	-14.50	0.707317073170732	8	2-17,961-946	1-1,962-962[UP5];18-21,945-942[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUUCUGGUAGGUGAUAUAAAU&UUUUAUAUUACUUAUUAUUAC	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN22091_c0_g1_953_TPlot.pdf
TRINITY_DN2209_c0_g1:1510	si_a325	TRINITY_DN2209_c0_g1	1499	1519	1510	-25.90	-20.70	0.799227799227799	5.5	1-3,1519-1517;6-21,1514-1499	4-5,1516-1515[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	GCAAGGAAUAGAAAAAGGAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2209_c0_g1_1510_TPlot.pdf
TRINITY_DN2209_c0_g1:1512	si_s73	TRINITY_DN2209_c0_g1	1500	1521	1512	-24.00	-15.60	0.65	8	3-14,1519-1508;15-20,1506-1501	1-2,1521-1520[UP5];x-x,1507-1507[BULt];21-21,1500-1500[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	CAAGGAAUAGAAAAAGGAUGUU&UCUAUUUUUUUUCU-UUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2209_c0_g1_1512_TPlot.pdf
TRINITY_DN220_c0_g1:2079	si_s69	TRINITY_DN220_c0_g1	2065	2088	2079	-23.40	-15.70	0.670940170940171	7.5	1-7,2088-2082;9-14,2080-2075;15-21,2071-2065	8-8,2081-2081[SIL];x-x,2074-2072[BULt]	(((((((...((((((.(((((((&))))))).))))))---)))))))	GAAGGAGCCCGAAGAAAAGAAGUU&AACUUCUAUUUUUU---UUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN220_c0_g1_2079_TPlot.pdf
TRINITY_DN220_c0_g1:2363	si_s79	TRINITY_DN220_c0_g1	2352	2372	2363	-26.20	-20.00	0.763358778625954	6	1-10,2372-2363;12-21,2361-2352	11-11,2362-2362[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AGGAGGAAAGAAAGGAGAAGA&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999774156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN220_c0_g1_2363_TPlot.pdf
TRINITY_DN220_c0_g1:2364	si_s73	TRINITY_DN220_c0_g1	2353	2372	2364	-24.00	-19.80	0.825	6	1-3,2372-2370;5-21,2369-2353	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	GGAGGAAAGAAAGGAGA-AGA&UCUAUUUUUUUUCUUUCCUUU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN220_c0_g1_2364_TPlot.pdf
TRINITY_DN220_c0_g1:2371	si_s76	TRINITY_DN220_c0_g1	2359	2380	2371	-23.60	-20.40	0.864406779661017	5	2-11,2379-2370;12-21,2368-2359	1-1,2380-2380[UP5];x-x,2369-2369[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAGAAAGGAGAAGAAAGAAAAG&AUUUUUUUUCU-UUCCUUUCUU	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN220_c0_g1_2371_TPlot.pdf
TRINITY_DN220_c0_g1:2372	si_s75	TRINITY_DN220_c0_g1	2360	2381	2372	-24.00	-19.50	0.8125	6.5	3-12,2379-2370;13-21,2368-2360	1-2,2381-2380[UP5];x-x,2369-2369[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	AGAAAGGAGAAGAAAGAAAAGG&UAUUUUUUUUCU-UUCCUUUCU	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN220_c0_g1_2372_TPlot.pdf
TRINITY_DN220_c0_g1:2373	si_s74	TRINITY_DN220_c0_g1	2361	2383	2373	-25.00	-18.80	0.752	6.5	1-2,2383-2382;4-13,2379-2370;14-21,2368-2361	3-3,2381-2380[AILt];x-x,2369-2369[BULt]	((((((((.((((((((((..((&))-.))))))))))-))))))))	GAAAGGAGAAGAAAGAAAAGGAG&CU-AUUUUUUUUCU-UUCCUUUC	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN220_c0_g1_2373_TPlot.pdf
TRINITY_DN220_c0_g1:2390	si_a497	TRINITY_DN220_c0_g1	2378	2400	2390	-32.00	-21.00	0.65625	10.5	3-5,2398-2396;7-10,2393-2390;11-21,2388-2378	1-2,2400-2399[UP5];6-6,2395-2394[AILt];x-x,2389-2389[BULt]	(((((((((((.((((..(((..&..)))-.))))-)))))))))))	AAGGAGGACGAUAAGAAAGACGC&AUGUC-GUUUU-UCGUCUUCCUU	2	0.999999999999116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN220_c0_g1_2390_TPlot.pdf
TRINITY_DN220_c0_g1:2459	si_a498	TRINITY_DN220_c0_g1	2446	2468	2459	-33.50	-25.40	0.758208955223881	5.5	2-15,2467-2454;16-21,2451-2446	1-1,2468-2468[UP5];x-x,2453-2452[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	UAAGGAAAAGACGGAAAAUGACG&UGUCGUUUUUCGUCU--UCCUUG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN220_c0_g1_2459_TPlot.pdf
TRINITY_DN220_c0_g1:2462	si_a495	TRINITY_DN220_c0_g1	2449	2471	2462	-31.90	-22.30	0.699059561128527	10.5	5-18,2467-2454;19-21,2451-2449	1-4,2471-2468[UP5];x-x,2453-2452[BULt]	(((..((((((((((((((....&....))))))))))))))--)))	GGAAAAGACGGAAAAUGACGAGA&AUAUGUCGUUUUUCGUCU--UCC	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN220_c0_g1_2462_TPlot.pdf
TRINITY_DN220_c0_g1:2463	si_a494	TRINITY_DN220_c0_g1	2452	2472	2463	-29.50	-20.50	0.694915254237288	11.5	6-20,2467-2453	1-5,2472-2468[UP5];21-21,2452-2452[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAGACGGAAAAUGACGAGAA&AAUAUGUCGUUUUUCGUCUUC	2	0.999414355145247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN220_c0_g1_2463_TPlot.pdf
TRINITY_DN220_c0_g1:2525	si_s87	TRINITY_DN220_c0_g1	2515	2535	2525	-32.90	-22.60	0.68693009118541	6	1-3,2535-2533;4-12,2531-2523;14-21,2522-2515	x-x,2532-2532[BULt];13-13,x-x[BULq]	((((((((-(((((((((.(((&)))-))))))))).))))))))	GGGUGAGG-AGAAGAAAGAGGA&UUC-CUUUCUUCUUCUUCGCUU	2	0.999999996654205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN220_c0_g1_2525_TPlot.pdf
TRINITY_DN220_c0_g1:2526	si_s86	TRINITY_DN220_c0_g1	2516	2536	2526	-32.90	-23.10	0.702127659574468	5.5	1-4,2536-2533;5-13,2531-2523;15-21,2522-2516	x-x,2532-2532[BULt];14-14,x-x[BULq]	(((((((-(((((((((.((((&))))-))))))))).)))))))	GGUGAGG-AGAAGAAAGAGGAA&UUUC-CUUUCUUCUUCUUCGCU	2	0.999998867138376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN220_c0_g1_2526_TPlot.pdf
TRINITY_DN220_c0_g1:2528	si_s84	TRINITY_DN220_c0_g1	2517	2538	2528	-32.30	-23.70	0.73374613003096	6	1-6,2538-2533;7-19,2531-2519	x-x,2532-2532[BULt];20-21,2518-2517[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	GUGAGGAGAAGAAAGAGGAAGA&UCUUUC-CUUUCUUCUUCUUCG	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN220_c0_g1_2528_TPlot.pdf
TRINITY_DN220_c0_g1:2529	si_s83	TRINITY_DN220_c0_g1	2518	2539	2529	-30.90	-23.90	0.773462783171521	6	2-7,2538-2533;8-20,2531-2519	1-1,2539-2539[UP5];x-x,2532-2532[BULt];21-21,2518-2518[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	UGAGGAGAAGAAAGAGGAAGAU&UUCUUUC-CUUUCUUCUUCUUC	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN220_c0_g1_2529_TPlot.pdf
TRINITY_DN220_c0_g1:2530	si_s82	TRINITY_DN220_c0_g1	2519	2540	2530	-28.90	-23.90	0.826989619377163	7	3-8,2538-2533;9-21,2531-2519	1-2,2540-2539[UP5];x-x,2532-2532[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	GAGGAGAAGAAAGAGGAAGAUA&UUUCUUUC-CUUUCUUCUUCUU	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN220_c0_g1_2530_TPlot.pdf
TRINITY_DN220_c0_g1:2533	si_s80	TRINITY_DN220_c0_g1	2521	2542	2533	-28.20	-21.50	0.762411347517731	10.5	5-10,2538-2533;11-21,2531-2521	1-4,2542-2539[UP5];x-x,2532-2532[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GGAGAAGAAAGAGGAAGAUAAG&UUUUUCUUUC-CUUUCUUCUUC	4	0.999999920598482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN220_c0_g1_2533_TPlot.pdf
TRINITY_DN220_c0_g1:2534	si_s79	TRINITY_DN220_c0_g1	2522	2543	2534	-26.20	-20.50	0.782442748091603	6.5	1-4,2543-2540;6-11,2538-2533;12-21,2531-2522	5-5,2539-2539[SIL];x-x,2532-2532[BULt]	((((((((((.((((((.((((&)))).))))))-))))))))))	GAGAAGAAAGAGGAAGAUAAGA&UUUUUUCUUUC-CUUUCUUCUU	2	0.999906015518565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN220_c0_g1_2534_TPlot.pdf
TRINITY_DN220_c0_g1:2535	si_s78	TRINITY_DN220_c0_g1	2523	2544	2535	-26.20	-20.10	0.767175572519084	6	1-5,2544-2540;7-12,2538-2533;13-21,2531-2523	6-6,2539-2539[SIL];x-x,2532-2532[BULt]	(((((((((.((((((.(((((&))))).))))))-)))))))))	AGAAGAAAGAGGAAGAUAAGAA&UUUUUUUCUUUC-CUUUCUUCU	2	0.999994631677662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN220_c0_g1_2535_TPlot.pdf
TRINITY_DN220_c0_g1:2536	si_s77	TRINITY_DN220_c0_g1	2524	2545	2536	-25.50	-19.20	0.752941176470588	5.5	1-6,2545-2540;8-13,2538-2533;14-21,2531-2524	7-7,2539-2539[SIL];x-x,2532-2532[BULt]	((((((((.((((((.((((((&)))))).))))))-))))))))	GAAGAAAGAGGAAGAUAAGAAG&UUUUUUUUCUUUC-CUUUCUUC	2	0.999999910567177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN220_c0_g1_2536_TPlot.pdf
TRINITY_DN220_c0_g1:2538	si_s69	TRINITY_DN220_c0_g1	2527	2547	2538	-23.40	-17.10	0.730769230769231	9	3-7,2545-2541;10-21,2538-2527	1-2,2547-2546[UP5];8-9,2540-2539[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GAAAGAGGAAGAUAAGAAGCC&AACUUCUAUUUUUUUUCUUUC	2	0.99999976093547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN220_c0_g1_2538_TPlot.pdf
TRINITY_DN220_c0_g1:2598	si_a142	TRINITY_DN220_c0_g1	2587	2607	2598	-23.50	-15.80	0.672340425531915	15.5	7-19,2601-2589	1-6,2607-2602[UP5];20-21,2588-2587[UP3]	..(((((((((((((......&......)))))))))))))..	AGAAAGCGGCGACGAAAGCGA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999998092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN220_c0_g1_2598_TPlot.pdf
TRINITY_DN220_c0_g1:2599	si_a141	TRINITY_DN220_c0_g1	2588	2608	2599	-23.80	-15.80	0.663865546218487	16.5	8-20,2601-2589	1-7,2608-2602[UP5];21-21,2588-2588[UP3]	.(((((((((((((.......&.......))))))))))))).	GAAAGCGGCGACGAAAGCGAA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999951399857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN220_c0_g1_2599_TPlot.pdf
TRINITY_DN220_c0_g1:2616	si_s89	TRINITY_DN220_c0_g1	2599	2626	2616	-35.30	-24.00	0.679886685552408	13	1-5,2626-2622;6-10,2620-2616;11-19,2610-2602;20-21,2600-2599	x-x,2621-2621[BULt];x-x,2615-2611[BULt];x-x,2601-2601[BULt]	((.(((((((((.....(((((.(((((&)))))-)))))-----)))))))))-))	CGAAAGCGAAGAGAGUGAGAAGAAAAGG&CCUUU-CUUCU-----UCUUCGCUU-CG	2	0.999999456418668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN220_c0_g1_2616_TPlot.pdf
TRINITY_DN220_c0_g1:2619	si_s86	TRINITY_DN220_c0_g1	2603	2629	2619	-32.90	-24.70	0.750759878419453	8	1-8,2629-2622;9-13,2620-2616;14-21,2610-2603	x-x,2621-2621[BULt];x-x,2615-2611[BULt]	((((((((.....(((((.((((((((&))))))))-)))))-----))))))))	AGCGAAGAGAGUGAGAAGAAAAGGAGA&UUUCCUUU-CUUCU-----UCUUCGCU	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN220_c0_g1_2619_TPlot.pdf
TRINITY_DN220_c0_g1:2621	si_a785	TRINITY_DN220_c0_g1	2609	2630	2621	-25.90	-19.60	0.756756756756757	6	1-7,2630-2624;9-15,2622-2616;16-21,2614-2609	8-8,2623-2623[SIL];x-x,2615-2615[BULt]	((((((.(((((((.(((((((&))))))).)))))))-))))))	GAGAGUGAGAAGAAAAGGAGAG&CUCUUCUAUUUUUCU-AUUUUC	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN220_c0_g1_2621_TPlot.pdf
TRINITY_DN220_c0_g1:3347	si_s93	TRINITY_DN220_c0_g1	3336	3356	3347	-34.80	-24.80	0.71264367816092	7	1-17,3356-3340	18-21,3339-3336[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGGAUGAGGUGAAGAAGGAGA&UCUUCUUCUUCGCUUCGGAUU	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN220_c0_g1_3347_TPlot.pdf
TRINITY_DN220_c0_g1:3351	si_s89	TRINITY_DN220_c0_g1	3340	3360	3351	-35.30	-29.20	0.827195467422096	6	2-20,3359-3341	1-1,3360-3360[UP5];21-21,3340-3340[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UGAGGUGAAGAAGGAGAGGGA&CCUUUCUUCUUCUUCGCUUCG	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN220_c0_g1_3351_TPlot.pdf
TRINITY_DN220_c0_g1:3353	si_s87	TRINITY_DN220_c0_g1	3342	3364	3353	-32.90	-27.30	0.829787234042553	7	1-6,3364-3359;7-21,3356-3342	x-x,3358-3357[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	AGGUGAAGAAGGAGAGGGAGGAA&UUCCUU--UCUUCUUCUUCGCUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN220_c0_g1_3353_TPlot.pdf
TRINITY_DN220_c0_g1:3360	si_s78	TRINITY_DN220_c0_g1	3348	3369	3360	-26.20	-22.60	0.862595419847328	5.5	1-17,3369-3353;18-21,3351-3348	x-x,3352-3352[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	AGAAGGAGAGGGAGGAAAAGGA&UUUUUUUCUUUCCUUUC-UUCU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN220_c0_g1_3360_TPlot.pdf
TRINITY_DN220_c0_g1:750	si_a753	TRINITY_DN220_c0_g1	739	759	750	-33.10	-22.10	0.667673716012085	12	6-13,754-747;15-21,745-739	1-5,759-755[UP5];14-14,746-746[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	GAAAGCUGGAAGGAGGGAUAG&AUGAACCUCCUUUGGGUUUUU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN220_c0_g1_750_TPlot.pdf
TRINITY_DN220_c0_g1:757	si_s74	TRINITY_DN220_c0_g1	746	771	757	-25.00	-17.40	0.696	17.5	1-8,771-764;11-21,756-746	9-10,763-757[AILt]	(((((((((((.......((((((((&))))))))-----..)))))))))))	GGAAGGAGGGAUAGGUCCAGAGAUAG&CUAUUUUU-----UUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN220_c0_g1_757_TPlot.pdf
TRINITY_DN220_c0_g1:764	si_s72	TRINITY_DN220_c0_g1	748	773	764	-24.10	-15.80	0.655601659751037	18	2-10,772-764;13-21,756-748	1-1,773-773[UP5];11-12,763-757[AILt]	(((((((((.......(((((((((.&.)))))))))-----..)))))))))	AAGGAGGGAUAGGUCCAGAGAUAGAG&UUCUAUUUUU-----UUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN220_c0_g1_764_TPlot.pdf
TRINITY_DN220_c0_g1:803	si_s84	TRINITY_DN220_c0_g1	792	813	803	-32.30	-23.60	0.730650154798762	7.5	1-8,813-806;9-19,804-794	x-x,805-805[BULt];20-21,793-792[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	ACAGGAAGAGGAGAAGGGAAGA&UCUUUCCU-UUCUUCUUCUUCG	2	0.999657069035875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN220_c0_g1_803_TPlot.pdf
TRINITY_DN220_c0_g1:804	si_s83	TRINITY_DN220_c0_g1	793	814	804	-30.90	-24.50	0.792880258899676	6	1-9,814-806;10-20,804-794	x-x,805-805[BULt];21-21,793-793[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	CAGGAAGAGGAGAAGGGAAGAA&UUCUUUCCU-UUCUUCUUCUUC	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN220_c0_g1_804_TPlot.pdf
TRINITY_DN220_c0_g1:807	si_s81	TRINITY_DN220_c0_g1	795	816	807	-28.90	-25.10	0.868512110726644	5.5	1-11,816-806;12-21,804-795	x-x,805-805[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	GGAAGAGGAGAAGGGAAGAAAG&UUUUCUUUCCU-UUCUUCUUCU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN220_c0_g1_807_TPlot.pdf
TRINITY_DN220_c0_g1:809	si_s79	TRINITY_DN220_c0_g1	797	818	809	-26.20	-21.30	0.812977099236641	6	2-13,817-806;14-21,804-797	1-1,818-818[UP5];x-x,805-805[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AAGAGGAGAAGGGAAGAAAGGU&UUUUUUCUUUCCU-UUCUUCUU	4	0.999937557622403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN220_c0_g1_809_TPlot.pdf
TRINITY_DN2210_c0_g1:3865	si_a787	TRINITY_DN2210_c0_g1	3854	3878	3865	-26.30	-17.10	0.650190114068441	14.5	1-9,3878-3870;10-19,3865-3856	x-x,3869-3866[BULt];20-21,3855-3854[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	UAGAGAAUAGAGUAAUGGAUAGAGG&CUUCUAUUU----UUCUAUUUUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2210_c0_g1_3865_TPlot.pdf
TRINITY_DN2210_c0_g1:3866	si_a786	TRINITY_DN2210_c0_g1	3855	3876	3866	-26.60	-17.40	0.654135338345865	7.5	1-3,3876-3874;4-9,3872-3867;11-20,3865-3856	x-x,3873-3873[BULt];10-10,3866-3866[SIL];21-21,3855-3855[UP3]	.((((((((((.((((((.(((&)))-)))))).)))))))))).	AGAGAAUAGAGUAAUGGAUAGA&UCU-UCUAUUUUUCUAUUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2210_c0_g1_3866_TPlot.pdf
TRINITY_DN2210_c0_g1:3868	si_a784	TRINITY_DN2210_c0_g1	3857	3878	3868	-24.70	-17.60	0.712550607287449	7	2-5,3877-3874;6-11,3872-3867;13-21,3865-3857	1-1,3878-3878[UP5];x-x,3873-3873[BULt];12-12,3866-3866[SIL]	(((((((((.((((((.((((.&.))))-)))))).)))))))))	AGAAUAGAGUAAUGGAUAGAGG&ACUCU-UCUAUUUUUCUAUUUU	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2210_c0_g1_3868_TPlot.pdf
TRINITY_DN2210_c0_g1:4212	si_a637	TRINITY_DN2210_c0_g1	4201	4220	4212	-25.80	-17.50	0.678294573643411	8.5	1-1,4220-4220;3-16,4219-4206	2-2,x-x[BULq];17-21,4205-4201[UP3]	.....((((((((((((((-(&).)))))))))))))).....	GAACAGCUCAGAAAAAUCG-C&GUCGAUUUUUUUGAGUAAUAU	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2210_c0_g1_4212_TPlot.pdf
TRINITY_DN2210_c0_g1:4213	si_a636	TRINITY_DN2210_c0_g1	4202	4221	4213	-26.30	-17.70	0.673003802281369	8.5	2-2,4220-4220;4-17,4219-4206	1-1,4221-4221[UP5];3-3,x-x[BULq];18-21,4205-4202[UP3]	....((((((((((((((-(.&.).))))))))))))))....	AACAGCUCAGAAAAAUCG-CU&UGUCGAUUUUUUUGAGUAAUA	3	0.999999914612344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2210_c0_g1_4213_TPlot.pdf
TRINITY_DN2210_c0_g1:4214	si_a635	TRINITY_DN2210_c0_g1	4203	4222	4214	-26.10	-17.70	0.67816091954023	9	3-3,4220-4220;5-18,4219-4206	1-2,4222-4221[UP5];4-4,x-x[BULq];19-21,4205-4203[UP3]	...((((((((((((((-(..&..).))))))))))))))...	ACAGCUCAGAAAAAUCG-CUU&AUGUCGAUUUUUUUGAGUAAU	2	0.999953766751949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2210_c0_g1_4214_TPlot.pdf
TRINITY_DN2210_c0_g1:4215	si_a634	TRINITY_DN2210_c0_g1	4204	4223	4215	-26.40	-17.70	0.670454545454545	10	4-4,4220-4220;6-19,4219-4206	1-3,4223-4221[UP5];5-5,x-x[BULq];20-21,4205-4204[UP3]	..((((((((((((((-(...&...).))))))))))))))..	CAGCUCAGAAAAAUCG-CUUC&UAUGUCGAUUUUUUUGAGUAA	2	0.999985827335772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN2210_c0_g1_4215_TPlot.pdf
TRINITY_DN2210_c0_g1:4216	si_a633	TRINITY_DN2210_c0_g1	4205	4224	4216	-26.40	-17.70	0.670454545454545	11	5-5,4220-4220;7-20,4219-4206	1-4,4224-4221[UP5];6-6,x-x[BULq];21-21,4205-4205[UP3]	.((((((((((((((-(....&....).)))))))))))))).	AGCUCAGAAAAAUCG-CUUCA&UUAUGUCGAUUUUUUUGAGUA	3	0.999999985909541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2210_c0_g1_4216_TPlot.pdf
TRINITY_DN2210_c0_g1:4217	si_a632	TRINITY_DN2210_c0_g1	4206	4225	4217	-26.10	-17.20	0.659003831417624	12	6-6,4220-4220;8-21,4219-4206	1-5,4225-4221[UP5];7-7,x-x[BULq]	((((((((((((((-(.....&.....).))))))))))))))	GCUCAGAAAAAUCG-CUUCAG&AUUAUGUCGAUUUUUUUGAGU	3	0.999999999281328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2210_c0_g1_4217_TPlot.pdf
TRINITY_DN2210_c0_g1:4340	si_s18	TRINITY_DN2210_c0_g1	4329	4349	4340	-27.50	-18.40	0.669090909090909	5.5	3-12,4347-4338;14-21,4336-4329	1-2,4349-4348[UP5];13-13,4337-4337[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGUUGUAAAUAAUAUAGUAUA&AUUACUAUAUUGAUUGCAACU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN2210_c0_g1_4340_TPlot.pdf
TRINITY_DN22131_c0_g1:265	si_s68	TRINITY_DN22131_c0_g1	254	273	265	-23.10	-16.40	0.70995670995671	6.5	3-5,271-269;7-21,268-254	1-2,273-272[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	AAAGAGAAAAAAUGG-AGUAG&CAACUUCUAUUUUUUUUCUUU	4	0.99999999842781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN22131_c0_g1_265_TPlot.pdf
TRINITY_DN22131_c0_g1:53	si_s274	TRINITY_DN22131_c0_g1	42	62	53	-30.20	-20.30	0.672185430463576	12.5	6-19,57-44	1-5,62-58[UP5];20-21,43-42[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGUGUAUUGUGUCGAAAUAU&AAAAAUCGACAUAAUACGCCU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s274_TRINITY_DN22131_c0_g1_53_TPlot.pdf
TRINITY_DN22138_c0_g1:1094	si_a780	TRINITY_DN22138_c0_g1	1082	1104	1094	-27.30	-18.20	0.666666666666667	8.5	1-4,1104-1101;6-15,1098-1089;16-20,1087-1083	5-5,1100-1099[AILt];x-x,1088-1088[BULt];21-21,1082-1082[UP3]	.(((((.((((((((((..((((&))))-.))))))))))-))))).	GGGAAACAAUGGAAGAGGCUGGA&UUCA-ACUCUUCUAUU-UUUCUA	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN22138_c0_g1_1094_TPlot.pdf
TRINITY_DN22138_c0_g1:1095	si_a779	TRINITY_DN22138_c0_g1	1083	1105	1095	-27.00	-17.80	0.659259259259259	8	2-5,1104-1101;7-16,1098-1089;17-21,1087-1083	1-1,1105-1105[UP5];6-6,1100-1099[AILt];x-x,1088-1088[BULt]	(((((.((((((((((..((((.&.))))-.))))))))))-)))))	GGAAACAAUGGAAGAGGCUGGAA&AUUCA-ACUCUUCUAUU-UUUCU	3	0.99999963322098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN22138_c0_g1_1095_TPlot.pdf
TRINITY_DN22138_c0_g1:1104	si_s79	TRINITY_DN22138_c0_g1	1091	1113	1104	-26.20	-20.30	0.774809160305344	7.5	1-12,1113-1102;13-20,1099-1092	x-x,1101-1100[BULt];21-21,1091-1091[UP3]	.((((((((..((((((((((((&))))))))))))--)))))))).	UGGAAGAGGCUGGAAAGAAAGAA&UUUUUUCUUUCC--UUUCUUCUU	4	0.999999977459052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN22138_c0_g1_1104_TPlot.pdf
TRINITY_DN22138_c0_g1:1112	si_s71	TRINITY_DN22138_c0_g1	1101	1120	1112	-25.70	-17.90	0.696498054474708	9	1-5,1120-1116;9-20,1113-1102	6-8,1115-1114[AILq];21-21,1101-1101[UP3]	.((((((((((((..-(((((&)))))...)))))))))))).	UGGAAAGAAAGAACG-AGAGG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN22138_c0_g1_1112_TPlot.pdf
TRINITY_DN22138_c0_g1:1113	si_s70	TRINITY_DN22138_c0_g1	1102	1121	1113	-25.80	-18.10	0.701550387596899	9	2-6,1120-1116;10-21,1113-1102	1-1,1121-1121[UP5];7-9,1115-1114[AILq]	((((((((((((..-(((((.&.)))))...))))))))))))	GGAAAGAAAGAACG-AGAGGC&ACUUCUAUUUUUUUUCUUUCC	2	0.999999934481402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN22138_c0_g1_1113_TPlot.pdf
TRINITY_DN22138_c0_g1:1185	si_a171	TRINITY_DN22138_c0_g1	1174	1193	1185	-32.10	-22.80	0.710280373831776	8	1-5,1193-1189;7-18,1188-1177	6-6,x-x[BULq];19-21,1176-1174[UP3]	...((((((((((((-(((((&))))).))))))))))))...	GUAUGUCUAGAUGGG-GGAUG&UAUUCACCCGUCUAGAUAAUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN22138_c0_g1_1185_TPlot.pdf
TRINITY_DN2213_c0_g1:2483	si_s512	TRINITY_DN2213_c0_g1	2472	2489	2483	-24.80	-16.20	0.653225806451613	7.5	1-7,2489-2483;11-20,2482-2473	8-10,x-x[BULq];21-21,2472-2472[UP3]	.((((((((((---(((((((&)))))))...)))))))))).	ACGAGUUAAGA---UAGAAUU&AAUUCUAUAUUCUUAAUUCGA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN2213_c0_g1_2483_TPlot.pdf
TRINITY_DN2213_c0_g1:574	si_s758	TRINITY_DN2213_c0_g1	563	583	574	-23.50	-15.90	0.676595744680851	15	7-18,577-566	1-6,583-578[UP5];19-21,565-563[UP3]	...((((((((((((......&......))))))))))))...	GAAUGGUCGUUGUUGGUGAAG&UUAAAACAACAACGAUUAAUU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN2213_c0_g1_574_TPlot.pdf
TRINITY_DN2213_c0_g1:575	si_s757	TRINITY_DN2213_c0_g1	564	583	575	-25.10	-16.92	0.67410358565737	11	1-3,583-581;8-19,577-566	4-7,580-578[AILq];20-21,565-564[UP3]	..((((((((((((...-(((&)))....))))))))))))..	AAUGGUCGUUGUUGGUG-AAG&CUUAAAACAACAACGAUUAAU	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s757_TRINITY_DN2213_c0_g1_575_TPlot.pdf
TRINITY_DN22143_c0_g1:35	si_a321	TRINITY_DN22143_c0_g1	24	43	35	-26.70	-17.40	0.651685393258427	9	1-8,43-36;12-21,33-24	9-11,35-34[AILq]	((((((((((..-((((((((&))))))))...))))))))))	GGAAUGAAAAUA-UAUGGGUG&UAUCCAUGAUUUUUUUAUUCC	1	0.149248914286747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN22143_c0_g1_35_TPlot.pdf
TRINITY_DN22145_c0_g2:44	si_s236	TRINITY_DN22145_c0_g2	30	53	44	-29.60	-19.74	0.666891891891892	14	4-11,50-43;13-20,38-31	1-3,53-51[UP5];12-12,42-39[AILt];21-21,30-30[UP3]	.((((((((....((((((((...&...))))))))---.)))))))).	UAAUGCCUAGCAAUGAUUCCUACU&AUAAGGAAUCA---AUAGGCAUUU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN22145_c0_g2_44_TPlot.pdf
TRINITY_DN22145_c0_g2:45	si_s235	TRINITY_DN22145_c0_g2	31	54	45	-29.60	-19.74	0.666891891891892	14	5-12,50-43;14-21,38-31	1-4,54-51[UP5];13-13,42-39[AILt]	((((((((....((((((((....&....))))))))---.))))))))	AAUGCCUAGCAAUGAUUCCUACUA&AAUAAGGAAUCA---AUAGGCAUU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s235_TRINITY_DN22145_c0_g2_45_TPlot.pdf
TRINITY_DN22145_c1_g1:2147	si_a847	TRINITY_DN22145_c1_g1	2136	2156	2147	-31.20	-21.40	0.685897435897436	9	3-16,2154-2141	1-2,2156-2155[UP5];17-21,2140-2136[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUUCUUCAAGUUAGCAGCAU&AAGUUGCUAACUUGAAAUCCA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN22145_c1_g1_2147_TPlot.pdf
TRINITY_DN2214_c0_g1:2387	si_s552	TRINITY_DN2214_c0_g1	2375	2396	2387	-21.10	-15.70	0.744075829383886	7	3-19,2394-2378;20-20,2376-2376	1-2,2396-2395[UP5];x-x,2377-2377[BULt];21-21,2375-2375[UP3]	.(.(((((((((((((((((..&..)))))))))))))))))-).	UGUAGAGUAUUAAUUCUGUUAA&AAAAUAGAAUUAAUAUUUU-CG	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN2214_c0_g1_2387_TPlot.pdf
TRINITY_DN22151_c0_g1:142	si_s489	TRINITY_DN22151_c0_g1	132	151	142	-17.90	-12.00	0.670391061452514	6	1-10,151-142;12-18,141-135	11-11,x-x[BULq];19-21,134-132[UP3]	...(((((((-((((((((((&)))))))))).)))))))...	AUAGUUUAUG-UUAAAUAAAU&AUUUAUUUAAAUAUAAACAAA	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN22151_c0_g1_142_TPlot.pdf
TRINITY_DN22151_c0_g1:144	si_s487	TRINITY_DN22151_c0_g1	134	153	144	-18.40	-14.10	0.766304347826087	2.5	1-12,153-142;14-20,141-135	13-13,x-x[BULq];21-21,134-134[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	AGUUUAUG-UUAAAUAAAUAU&AUAUUUAUUUAAAUAUAAACA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN22151_c0_g1_144_TPlot.pdf
TRINITY_DN22156_c0_g1:848	si_a616	TRINITY_DN22156_c0_g1	837	858	848	-34.70	-24.60	0.708933717579251	7	1-3,858-856;5-7,854-852;8-19,850-839	4-4,855-855[SIL];x-x,851-851[BULt];20-21,838-837[UP3]	..((((((((((((.(((.(((&))).)))-))))))))))))..	UGAGUAUGCCUAGUCCGACUGG&CCAAUCG-ACUAGGCGUAUUAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a616_TRINITY_DN22156_c0_g1_848_TPlot.pdf
TRINITY_DN22168_c0_g1:1664	si_s380	TRINITY_DN22168_c0_g1	1653	1674	1664	-40.00	-27.10	0.6775	8	1-3,1674-1672;5-5,1670-1670;7-14,1667-1660;17-21,1657-1653	4-4,1671-1671[SIL];6-6,1669-1668[AILt];15-16,1659-1658[SIL]	(((((..((((((((..(.(((&))).)-.))))))))..)))))	AAUGUUUGGCGGACAAAGGGAG&CUCGC-GUGUCCGCCUUACAUU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN22168_c0_g1_1664_TPlot.pdf
TRINITY_DN2216_c0_g1:6041	si_s208	TRINITY_DN2216_c0_g1	6030	6050	6041	-34.50	-23.60	0.684057971014493	7.5	2-8,6049-6043;10-18,6041-6033	1-1,6050-6050[UP5];9-9,6042-6042[SIL];19-21,6032-6030[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	UGGUCGAAUGCAUCUGGUACU&UGUACCAGUUGUGUUCGAAAC	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN2216_c0_g1_6041_TPlot.pdf
TRINITY_DN2217_c0_g1:1034	si_a641	TRINITY_DN2217_c0_g1	1023	1043	1034	-23.60	-18.90	0.800847457627119	11	6-20,1038-1024	1-5,1043-1039[UP5];21-21,1023-1023[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGAUAUAUUACUCAGACUGUA&AUUUUUUUGAGUAAUAUAUCG	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN2217_c0_g1_1034_TPlot.pdf
TRINITY_DN2217_c0_g2:1462	si_a494	TRINITY_DN2217_c0_g2	1451	1471	1462	-29.50	-19.80	0.671186440677966	7	2-13,1470-1459;16-21,1456-1451	1-1,1471-1471[UP5];14-15,1458-1457[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GAAGACUCAAAAUGGCGUGUA&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999848796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2217_c0_g2_1462_TPlot.pdf
TRINITY_DN2217_c0_g2:241	si_a444	TRINITY_DN2217_c0_g2	230	249	241	-29.30	-19.10	0.651877133105802	8	1-9,249-241;12-21,239-230	10-11,240-240[AILq]	((((((((((.-(((((((((&)))))))))..))))))))))	GGCGACGAUUC-CUUGUAUCC&GGAUAUGAGAUAAUUGUUGUU	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN2217_c0_g2_241_TPlot.pdf
TRINITY_DN2217_c0_g2:260	si_a120	TRINITY_DN2217_c0_g2	249	274	260	-30.50	-20.00	0.655737704918033	18.5	1-9,274-266;12-19,258-251	10-11,265-259[AILt];20-21,250-249[UP3]	..((((((((.......(((((((((&)))))))))-----..))))))))..	CCAUUGCUGUUUUAAUCGACGAGCUC&GAGCUUGUU-----UUAUAGCAAUAG	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN2217_c0_g2_260_TPlot.pdf
TRINITY_DN2217_c1_g1:1016	si_s433	TRINITY_DN2217_c1_g1	1004	1025	1016	-21.10	-13.80	0.654028436018957	8.5	2-10,1024-1016;12-19,1013-1006	1-1,1025-1025[UP5];11-11,1015-1014[AILt];20-21,1005-1004[UP3]	..((((((((..(((((((((.&.)))))))))-.))))))))..	UGGUGAUGUGAAAAUUAUUGUA&AACAAUAAUU-ACAUAUUAUAU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN2217_c1_g1_1016_TPlot.pdf
TRINITY_DN2217_c1_g1:4629	si_s817	TRINITY_DN2217_c1_g1	4618	4638	4629	-24.50	-16.10	0.657142857142857	7.5	1-11,4638-4628;14-17,4625-4622	12-13,4627-4626[SIL];18-21,4621-4618[UP3]	....((((..(((((((((((&)))))))))))..))))....	UUGCCGUUCCUAAGAAAAGGU&ACCUUUUCUUAAUAAUGAAAA	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN2217_c1_g1_4629_TPlot.pdf
TRINITY_DN2217_c1_g1:4847	si_a647	TRINITY_DN2217_c1_g1	4835	4856	4847	-29.50	-20.00	0.677966101694915	7	1-10,4856-4847;11-16,4845-4840;18-18,4838-4838	x-x,4846-4846[BULt];17-17,4839-4839[SIL];19-21,4837-4835[UP3]	...(.((((((.((((((((((&))))))))))-)))))).)...	UUGUGCCGAUAUUAUUGCUCAA&UUGAGUAAUA-UAUCGGGAAAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN2217_c1_g1_4847_TPlot.pdf
TRINITY_DN2217_c1_g1:5234	si_a69	TRINITY_DN2217_c1_g1	5223	5243	5234	-24.00	-16.70	0.695833333333333	7	1-10,5243-5234;12-18,5232-5226	11-11,5233-5233[SIL];19-21,5225-5223[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	UUCGAGAACAUUUUGAAGGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999999320523381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2217_c1_g1_5234_TPlot.pdf
TRINITY_DN2217_c1_g1:5235	si_a68	TRINITY_DN2217_c1_g1	5224	5244	5235	-25.40	-19.60	0.771653543307087	6	1-11,5244-5234;13-19,5232-5226	12-12,5233-5233[SIL];20-21,5225-5224[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UCGAGAACAUUUUGAAGGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2217_c1_g1_5235_TPlot.pdf
TRINITY_DN22182_c0_g1:77	si_a642	TRINITY_DN22182_c0_g1	66	86	77	-25.90	-17.10	0.66023166023166	7	2-16,85-71;18-20,69-67	1-1,86-86[UP5];17-17,70-70[SIL];21-21,66-66[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	ACGAGAUAUUAUUCGAGAAGG&UUUUUUUGAGUAAUAUAUCGG	2	0.992763914805312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN22182_c0_g1_77_TPlot.pdf
TRINITY_DN22182_c0_g1:78	si_a641	TRINITY_DN22182_c0_g1	67	87	78	-23.60	-16.60	0.703389830508475	8	3-17,85-71;19-21,69-67	1-2,87-86[UP5];18-18,70-70[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	CGAGAUAUUAUUCGAGAAGGA&AUUUUUUUGAGUAAUAUAUCG	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN22182_c0_g1_78_TPlot.pdf
TRINITY_DN2218_c0_g1:3012	si_a784	TRINITY_DN2218_c0_g1	3001	3022	3012	-24.70	-16.60	0.672064777327935	8.5	2-4,3021-3019;6-8,3017-3015;10-21,3012-3001	1-1,3022-3022[UP5];5-5,3018-3018[SIL];9-9,3014-3013[AILt]	((((((((((((..(((.(((.&.))).)))-.))))))))))))	GAAAUAGAAGAAGCAGACGAGG&ACUCUUCU-AUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2218_c0_g1_3012_TPlot.pdf
TRINITY_DN2218_c0_g1:3017	si_s84	TRINITY_DN2218_c0_g1	3006	3027	3017	-32.30	-21.60	0.668730650154799	7	2-9,3026-3019;10-12,3017-3015;14-20,3013-3007	1-1,3027-3027[UP5];x-x,3018-3018[BULt];13-13,3014-3014[SIL];21-21,3006-3006[UP3]	.(((((((.(((.((((((((.&.))))))))-))).))))))).	AGAAGAAGCAGACGAGGAAGGU&UCUUUCCUU-UCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2218_c0_g1_3017_TPlot.pdf
TRINITY_DN2218_c0_g1:4478	si_s528	TRINITY_DN2218_c0_g1	4466	4487	4478	-29.40	-20.20	0.687074829931973	8.5	4-16,4484-4472;17-21,4470-4466	1-3,4487-4485[UP5];x-x,4471-4471[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	UGGAUACGGAGAUGAUUUCUGA&UUCGAAAUCAUUUUUG-AUCCG	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN2218_c0_g1_4478_TPlot.pdf
TRINITY_DN2218_c0_g1:4494	si_s799	TRINITY_DN2218_c0_g1	4483	4502	4494	-30.00	-20.20	0.673333333333333	5.5	1-4,4502-4499;6-19,4498-4485	5-5,x-x[BULq];20-21,4484-4483[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	UCUGACGAAGAUAGAA-ACGA&UCGUAUUUUAUCUUCGUUACC	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN2218_c0_g1_4494_TPlot.pdf
TRINITY_DN2218_c0_g1:4506	si_a66	TRINITY_DN2218_c0_g1	4495	4515	4506	-26.70	-17.70	0.662921348314607	6	1-6,4515-4510;8-9,4508-4507;11-21,4505-4495	7-7,4509-4509[SIL];10-10,4506-4506[SIL]	(((((((((((.((.((((((&)))))).)).)))))))))))	AGAAACGAUUUUGAUGAAGCG&CGCUUCUUUCAAAUUGUUUUU	2	0.999999988384745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2218_c0_g1_4506_TPlot.pdf
TRINITY_DN2218_c0_g1:4643	si_a183	TRINITY_DN2218_c0_g1	4632	4653	4643	-30.10	-20.70	0.687707641196013	9	3-5,4651-4649;6-18,4647-4635	1-2,4653-4652[UP5];x-x,4648-4648[BULt];19-21,4634-4632[UP3]	...(((((((((((((.(((..&..)))-)))))))))))))...	UAAAGGGAAAGAUGUUCAUCGC&UAGAU-AAUAUCUUUCCCUGUU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN2218_c0_g1_4643_TPlot.pdf
TRINITY_DN2218_c0_g1:4647	si_a179	TRINITY_DN2218_c0_g1	4636	4657	4647	-32.90	-25.10	0.762917933130699	7	1-4,4657-4654;7-9,4651-4649;10-21,4647-4636	5-6,4653-4652[SIL];x-x,4648-4648[BULt]	((((((((((((.(((..((((&))))..)))-))))))))))))	GGGAAAGAUGUUCAUCGCGACG&CGUCUAGAU-AAUAUCUUUCCC	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN2218_c0_g1_4647_TPlot.pdf
TRINITY_DN2218_c0_g1:4649	si_a178	TRINITY_DN2218_c0_g1	4637	4658	4649	-32.90	-25.10	0.762917933130699	6.5	1-5,4658-4654;8-10,4651-4649;11-21,4647-4637	6-7,4653-4652[SIL];x-x,4648-4648[BULt]	(((((((((((.(((..(((((&)))))..)))-)))))))))))	GGAAAGAUGUUCAUCGCGACGG&CCGUCUAGAU-AAUAUCUUUCC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN2218_c0_g1_4649_TPlot.pdf
TRINITY_DN2218_c0_g1:4652	si_a175	TRINITY_DN2218_c0_g1	4640	4661	4652	-33.40	-21.90	0.655688622754491	6.5	2-8,4660-4654;11-13,4651-4649;14-21,4647-4640	1-1,4661-4661[UP5];9-10,4653-4652[SIL];x-x,4648-4648[BULt]	((((((((.(((..(((((((.&.)))))))..)))-))))))))	AAGAUGUUCAUCGCGACGGGUC&CACCCGUCUAGAU-AAUAUCUU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN2218_c0_g1_4652_TPlot.pdf
TRINITY_DN2218_c0_g1:4785	si_s63	TRINITY_DN2218_c0_g1	4774	4794	4785	-25.80	-17.20	0.666666666666667	5	1-4,4794-4791;6-12,4789-4783;15-21,4780-4774	5-5,4790-4790[SIL];13-14,4782-4781[SIL]	(((((((..(((((((.((((&)))).)))))))..)))))))	AAAGAGAACGAAGUUGGUAAC&GUUAGCAACUUCUAUUUUUUU	4	0.999999423956054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2218_c0_g1_4785_TPlot.pdf
TRINITY_DN2218_c0_g1:5556	si_s79	TRINITY_DN2218_c0_g1	5545	5565	5556	-26.20	-18.30	0.698473282442748	7	2-9,5564-5557;12-21,5554-5545	1-1,5565-5565[UP5];10-11,5556-5555[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	AAGAAGAGGGAUAAGAAAAGG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2218_c0_g1_5556_TPlot.pdf
TRINITY_DN2218_c0_g1:5557	si_s78	TRINITY_DN2218_c0_g1	5546	5566	5557	-26.20	-19.00	0.725190839694656	7	1-10,5566-5557;13-21,5554-5546	11-12,5556-5555[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AGAAGAGGGAUAAGAAAAGGA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2218_c0_g1_5557_TPlot.pdf
TRINITY_DN2218_c0_g1:5558	si_s77	TRINITY_DN2218_c0_g1	5547	5567	5558	-25.50	-18.60	0.729411764705882	6	1-11,5567-5557;14-21,5554-5547	12-13,5556-5555[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GAAGAGGGAUAAGAAAAGGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999944951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2218_c0_g1_5558_TPlot.pdf
TRINITY_DN2218_c0_g1:5563	si_s82	TRINITY_DN2218_c0_g1	5545	5573	5563	-28.90	-19.10	0.660899653979239	18.5	1-3,5573-5571;4-10,5569-5563;11-21,5555-5545	x-x,5570-5570[BULt];x-x,5562-5556[BULt]	(((((((((((.......(((((((.(((&)))-)))))))-------)))))))))))	AAGAAGAGGGAUAAGAAAAGGAAAGCAGA&UUU-CUUUCCU-------UUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2218_c0_g1_5563_TPlot.pdf
TRINITY_DN2218_c0_g1:5564	si_s81	TRINITY_DN2218_c0_g1	5546	5574	5564	-28.90	-19.10	0.660899653979239	18	1-4,5574-5571;5-11,5569-5563;12-21,5555-5546	x-x,5570-5570[BULt];x-x,5562-5556[BULt]	((((((((((.......(((((((.((((&))))-)))))))-------))))))))))	AGAAGAGGGAUAAGAAAAGGAAAGCAGAA&UUUU-CUUUCCU-------UUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2218_c0_g1_5564_TPlot.pdf
TRINITY_DN2218_c0_g1:5565	si_s80	TRINITY_DN2218_c0_g1	5547	5575	5565	-28.20	-18.70	0.663120567375887	18	1-5,5575-5571;6-12,5569-5563;13-21,5555-5547	x-x,5570-5570[BULt];x-x,5562-5556[BULt]	(((((((((.......(((((((.(((((&)))))-)))))))-------)))))))))	GAAGAGGGAUAAGAAAAGGAAAGCAGAAA&UUUUU-CUUUCCU-------UUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2218_c0_g1_5565_TPlot.pdf
TRINITY_DN2218_c0_g1:5735	si_a326	TRINITY_DN2218_c0_g1	5724	5744	5735	-26.20	-17.20	0.656488549618321	10	5-20,5740-5725	1-4,5744-5741[UP5];21-21,5724-5724[UP3]	.((((((((((((((((....&....)))))))))))))))).	UACGAGGGAUAAAAGAAAAAA&AUGAUUUUUUUAUUCCUUGUC	2	0.999999751840431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2218_c0_g1_5735_TPlot.pdf
TRINITY_DN2218_c0_g1:5736	si_a325	TRINITY_DN2218_c0_g1	5725	5746	5736	-25.90	-18.30	0.706563706563707	8	1-3,5746-5744;6-21,5740-5725	4-5,5743-5741[AILt]	((((((((((((((((...(((&)))-..))))))))))))))))	ACGAGGGAUAAAAGAAAAAAUG&CAU-GAUUUUUUUAUUCCUUGU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2218_c0_g1_5736_TPlot.pdf
TRINITY_DN2218_c0_g1:5774	si_s69	TRINITY_DN2218_c0_g1	5763	5783	5774	-23.40	-15.60	0.666666666666667	8.5	3-7,5781-5777;9-20,5775-5764	1-2,5783-5782[UP5];8-8,5776-5776[SIL];21-21,5763-5763[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	CAAAGAGAAGAGAAAGAAGAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2218_c0_g1_5774_TPlot.pdf
TRINITY_DN2218_c0_g1:6192	si_s636	TRINITY_DN2218_c0_g1	6178	6201	6192	-40.80	-26.70	0.654411764705882	7	2-14,6200-6188;15-15,6186-6186;17-20,6182-6179	1-1,6201-6201[UP5];x-x,6187-6187[BULt];16-16,6185-6183[AILt];21-21,6178-6178[UP3]	.((((...(.(((((((((((((.&.)))))))))))))-)--.)))).	CCGAGUUCGCCAGACGCCUACGAU&UUCGUAGGCGUUUG-C--CCUCGA	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN2218_c0_g1_6192_TPlot.pdf
TRINITY_DN2218_c0_g1:6193	si_s635	TRINITY_DN2218_c0_g1	6179	6202	6193	-39.80	-25.90	0.650753768844221	7.5	3-15,6200-6188;16-16,6186-6186;18-21,6182-6179	1-2,6202-6201[UP5];x-x,6187-6187[BULt];17-17,6185-6183[AILt]	((((...(.(((((((((((((..&..)))))))))))))-)--.))))	CGAGUUCGCCAGACGCCUACGAUC&UUUCGUAGGCGUUUG-C--CCUCG	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN2218_c0_g1_6193_TPlot.pdf
TRINITY_DN2218_c0_g1:6199	si_s629	TRINITY_DN2218_c0_g1	6188	6208	6199	-34.60	-25.44	0.735260115606936	10.5	1-3,6208-6206;9-21,6200-6188	4-8,6205-6201[SIL]	(((((((((((((.....(((&))).....)))))))))))))	CAGACGCCUACGAUCCUUUCG&CGAUCUUUUCGUAGGCGUUUG	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN2218_c0_g1_6199_TPlot.pdf
TRINITY_DN2218_c1_g1:269	si_a26	TRINITY_DN2218_c1_g1	254	279	269	-28.00	-18.60	0.664285714285714	8	1-9,279-271;10-15,269-264;16-20,259-255	x-x,270-270[BULt];x-x,263-260[BULt];21-21,254-254[UP3]	.(((((....((((((.(((((((((&)))))))))-))))))----))))).	UGGUCUCUUGUAGAACUUAAAAAUGA&UUAUUUUUA-GUUCUA----AGACCG	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN2218_c1_g1_269_TPlot.pdf
TRINITY_DN22191_c0_g1:1146	si_a399	TRINITY_DN22191_c0_g1	1134	1155	1146	-22.60	-14.80	0.654867256637168	8.5	1-11,1155-1145;13-18,1142-1137	12-12,1144-1143[AILt];19-21,1136-1134[UP3]	...((((((..(((((((((((&)))))))))))-.))))))...	UUCAACAAGUCCAAUUCUAUGU&AUAUAGAAUUG-UUUUGUUUAU	2	0.999999469782637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN22191_c0_g1_1146_TPlot.pdf
TRINITY_DN22191_c0_g1:1147	si_a398	TRINITY_DN22191_c0_g1	1135	1156	1147	-22.40	-15.00	0.669642857142857	7.5	2-12,1155-1145;14-19,1142-1137	1-1,1156-1156[UP5];13-13,1144-1143[AILt];20-21,1136-1135[UP3]	..((((((..(((((((((((.&.)))))))))))-.))))))..	UCAACAAGUCCAAUUCUAUGUC&AAUAUAGAAUUG-UUUUGUUUA	4	0.999999982764298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN22191_c0_g1_1147_TPlot.pdf
TRINITY_DN22191_c0_g1:1335	si_a544	TRINITY_DN22191_c0_g1	1324	1344	1335	-28.90	-19.00	0.657439446366782	10	1-12,1344-1333	13-21,1332-1324[UP3]	.........((((((((((((&)))))))))))).........	CGCUAAACGAGAUUGAGCCGA&UCGGUUCAAUCUAUUUCUUUA	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN22191_c0_g1_1335_TPlot.pdf
TRINITY_DN22191_c0_g1:1336	si_a543	TRINITY_DN22191_c0_g1	1325	1345	1336	-28.70	-19.00	0.662020905923345	10	2-13,1344-1333	1-1,1345-1345[UP5];14-21,1332-1325[UP3]	........((((((((((((.&.))))))))))))........	GCUAAACGAGAUUGAGCCGAA&AUCGGUUCAAUCUAUUUCUUU	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN22191_c0_g1_1336_TPlot.pdf
TRINITY_DN22191_c0_g1:460	si_s39	TRINITY_DN22191_c0_g1	449	468	460	-22.30	-15.00	0.672645739910314	10.5	3-9,466-460;13-21,457-449	1-2,468-467[UP5];10-12,459-458[AILq]	(((((((((..-(((((((..&..)))))))...)))))))))	AGAUCCAAUGA-UAAGGAUGC&AAAUCUUUAAUAAUUGGAUUU	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN22191_c0_g1_460_TPlot.pdf
TRINITY_DN22191_c0_g1:567	si_s82	TRINITY_DN22191_c0_g1	556	576	567	-28.90	-18.80	0.650519031141869	6	2-14,575-563;17-19,560-558	1-1,576-576[UP5];15-16,562-561[SIL];20-21,557-556[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	ACGAGCUGGAAAGGAAAGAAU&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN22191_c0_g1_567_TPlot.pdf
TRINITY_DN22191_c0_g1:571	si_s78	TRINITY_DN22191_c0_g1	559	580	571	-26.20	-17.60	0.67175572519084	11.5	6-18,575-563;20-21,560-559	1-5,580-576[UP5];19-19,562-561[AILt]	((..(((((((((((((.....&.....)))))))))))))-.))	AGCUGGAAAGGAAAGAAUUCAA&UUUUUUUCUUUCCUUUCU-UCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN22191_c0_g1_571_TPlot.pdf
TRINITY_DN22195_c0_g1:383	si_s771	TRINITY_DN22195_c0_g1	372	392	383	-25.20	-16.80	0.666666666666667	14	6-19,387-374	1-5,392-388[UP5];20-21,373-372[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAUAGCGGUGGUGAUAUUAG&GAUUAAUUACUAUUGCUAUAA	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN22195_c0_g1_383_TPlot.pdf
TRINITY_DN2219_c0_g1:1249	si_s66	TRINITY_DN2219_c0_g1	1238	1264	1249	-26.30	-17.74	0.674524714828897	17	1-9,1264-1256;12-21,1247-1238	10-11,1255-1248[AILt]	((((((((((........(((((((((&)))))))))------..))))))))))	GGAAAAAAGAAAGCAUGUGAAGUUGCU&AGCAACUUC------UAUUUUUUUUCU	3	0.999999745227742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2219_c0_g1_1249_TPlot.pdf
TRINITY_DN2219_c0_g1:1256	si_s65	TRINITY_DN2219_c0_g1	1239	1265	1256	-26.00	-17.74	0.682307692307692	16.5	1-10,1265-1256;13-21,1247-1239	11-12,1255-1248[AILt]	(((((((((........((((((((((&))))))))))------..)))))))))	GAAAAAAGAAAGCAUGUGAAGUUGCUA&UAGCAACUUC------UAUUUUUUUUC	2	0.997863096634582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN2219_c0_g1_1256_TPlot.pdf
TRINITY_DN2219_c0_g1:1257	si_s64	TRINITY_DN2219_c0_g1	1244	1266	1257	-24.10	-17.60	0.730290456431535	5	1-11,1266-1256;12-14,1254-1252;15-21,1250-1244	x-x,1255-1255[BULt];x-x,1251-1251[BULt]	(((((((.(((.(((((((((((&)))))))))))-)))-)))))))	AAGAAAGCAUGUGAAGUUGCUAA&UUAGCAACUUC-UAU-UUUUUUU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2219_c0_g1_1257_TPlot.pdf
TRINITY_DN2219_c0_g1:1260	si_s61	TRINITY_DN2219_c0_g1	1249	1269	1260	-26.50	-19.00	0.716981132075472	10	3-14,1267-1256	1-2,1269-1268[UP5];15-21,1255-1249[UP3]	.......((((((((((((..&..)))))))))))).......	AGCAUGUGAAGUUGCUAACGC&AAGUUAGCAACUUCUAUUUUU	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN2219_c0_g1_1260_TPlot.pdf
TRINITY_DN2219_c0_g1:715	si_a644	TRINITY_DN2219_c0_g1	704	725	715	-29.30	-19.60	0.668941979522184	5	1-7,725-719;8-19,717-706;21-21,704-704	x-x,718-718[BULt];20-20,705-705[SIL]	(.((((((((((((.(((((((&)))))))-)))))))))))).)	UGUCGGUAUAUUACAUCAAGAA&UUUUUGA-GUAAUAUAUCGGGA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN2219_c0_g1_715_TPlot.pdf
TRINITY_DN221_c0_g1:1457	si_s41	TRINITY_DN221_c0_g1	1446	1466	1457	-25.00	-17.40	0.696	5	1-13,1466-1454;15-20,1452-1447	14-14,1453-1453[SIL];21-21,1446-1446[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	CGAAGUUAAGUUAUUAGAGAU&AUCUUUAAUAAUUGGAUUUCA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN221_c0_g1_1457_TPlot.pdf
TRINITY_DN2220_c0_g1:943	si_s68	TRINITY_DN2220_c0_g1	931	952	943	-23.10	-15.60	0.675324675324675	9.5	4-14,949-939;15-20,937-932	1-3,952-950[UP5];x-x,938-938[BULt];21-21,931-931[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	CGAGAGAGGAGAAUAGAAGCCA&CAACUUCUAUUUUU-UUUCUUU	2	0.999999999994563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2220_c0_g1_943_TPlot.pdf
TRINITY_DN22214_c0_g1:70	si_s773	TRINITY_DN22214_c0_g1	59	79	70	-23.10	-15.20	0.658008658008658	12	3-15,77-65	1-2,79-78[UP5];16-21,64-59[UP3]	......(((((((((((((..&..)))))))))))))......	GGUGGGAGCAAUGGUGGUUCG&UUAAUUACUAUUGCUAUAAAA	2	0.999924879086262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN22214_c0_g1_70_TPlot.pdf
TRINITY_DN2221_c0_g2:1149	si_a151	TRINITY_DN2221_c0_g2	1136	1159	1149	-28.90	-19.30	0.667820069204152	6	1-6,1159-1154;7-14,1152-1145;15-21,1142-1136	x-x,1153-1153[BULt];x-x,1144-1143[BULt]	(((((((..((((((((.((((((&))))))-))))))))--)))))))	AGGUUGGACCCUUAAAGUCAACAA&UUGUUG-UUUUAAGG--UCAAUCU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN2221_c0_g2_1149_TPlot.pdf
TRINITY_DN2221_c0_g2:1151	si_a149	TRINITY_DN2221_c0_g2	1138	1161	1151	-29.40	-19.30	0.656462585034014	7	2-8,1160-1154;9-16,1152-1145;17-21,1142-1138	1-1,1161-1161[UP5];x-x,1153-1153[BULt];x-x,1144-1143[BULt]	(((((..((((((((.(((((((.&.)))))))-))))))))--)))))	GUUGGACCCUUAAAGUCAACAACA&CGUUGUUG-UUUUAAGG--UCAAU	4	0.99999999145674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN2221_c0_g2_1151_TPlot.pdf
TRINITY_DN2221_c0_g2:1527	si_a787	TRINITY_DN2221_c0_g2	1515	1538	1527	-26.30	-18.10	0.688212927756654	10.5	1-7,1538-1532;8-18,1529-1519;19-20,1517-1516	x-x,1531-1530[BULt];x-x,1518-1518[BULt];21-21,1515-1515[UP3]	.((.(((((((((((..(((((((&)))))))--)))))))))))-)).	GGGUAAGAUAGAAGGCCGUAGAGG&CUUCUAU--UUUUCUAUUUU-CCA	4	0.999999998067349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2221_c0_g2_1527_TPlot.pdf
TRINITY_DN2221_c0_g2:1540	si_s83	TRINITY_DN2221_c0_g2	1525	1550	1540	-30.90	-21.80	0.705501618122977	8	1-9,1550-1542;10-16,1540-1534;17-21,1529-1525	x-x,1541-1541[BULt];x-x,1533-1530[BULt]	(((((....(((((((.(((((((((&)))))))))-)))))))----)))))	GAAGGCCGUAGAGGAAUAGGAAGGAA&UUCUUUCCU-UUCUUCU----UCUUC	2	0.999999994630912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2221_c0_g2_1540_TPlot.pdf
TRINITY_DN2221_c0_g2:1542	si_s82	TRINITY_DN2221_c0_g2	1530	1551	1542	-28.90	-18.90	0.653979238754325	7.5	2-10,1550-1542;11-17,1540-1534;19-19,1532-1532	1-1,1551-1551[UP5];x-x,1541-1541[BULt];18-18,1533-1533[SIL];20-21,1531-1530[UP3]	..(.(((((((.(((((((((.&.)))))))))-))))))).)..	CCGUAGAGGAAUAGGAAGGAAG&UUUCUUUCCU-UUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2221_c0_g2_1542_TPlot.pdf
TRINITY_DN2221_c0_g2:1543	si_s81	TRINITY_DN2221_c0_g2	1531	1552	1543	-28.90	-20.60	0.71280276816609	6.5	1-11,1552-1542;12-18,1540-1534;20-20,1532-1532	x-x,1541-1541[BULt];19-19,1533-1533[SIL];21-21,1531-1531[UP3]	.(.(((((((.(((((((((((&)))))))))))-))))))).).	CGUAGAGGAAUAGGAAGGAAGA&UUUUCUUUCCU-UUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2221_c0_g2_1543_TPlot.pdf
TRINITY_DN2221_c0_g2:1544	si_s80	TRINITY_DN2221_c0_g2	1532	1553	1544	-28.20	-21.30	0.75531914893617	6.5	1-12,1553-1542;13-19,1540-1534	x-x,1541-1541[BULt];20-21,1533-1532[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	GUAGAGGAAUAGGAAGGAAGAA&UUUUUCUUUCCU-UUCUUCUUC	3	0.999999991675878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2221_c0_g2_1544_TPlot.pdf
TRINITY_DN2221_c0_g2:1547	si_s77	TRINITY_DN2221_c0_g2	1535	1556	1547	-25.50	-21.10	0.827450980392157	6.5	3-15,1554-1542;16-21,1540-1535	1-2,1556-1555[UP5];x-x,1541-1541[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	GAGGAAUAGGAAGGAAGAAAUU&UUUUUUUUCUUUCCU-UUCUUC	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2221_c0_g2_1547_TPlot.pdf
TRINITY_DN2221_c0_g2:1634	si_s73	TRINITY_DN2221_c0_g2	1623	1643	1634	-24.00	-21.40	0.891666666666667	6.5	1-14,1643-1630;16-21,1628-1623	15-15,1629-1629[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	AAGGGAUAGAGAGGAGAUGGA&UCUAUUUUUUUUCUUUCCUUU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2221_c0_g2_1634_TPlot.pdf
TRINITY_DN2221_c0_g2:1635	si_s72	TRINITY_DN2221_c0_g2	1624	1644	1635	-24.10	-21.50	0.892116182572614	6.5	1-15,1644-1630;17-21,1628-1624	16-16,1629-1629[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AGGGAUAGAGAGGAGAUGGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2221_c0_g2_1635_TPlot.pdf
TRINITY_DN2221_c0_g2:1636	si_s71	TRINITY_DN2221_c0_g2	1625	1645	1636	-25.70	-20.90	0.813229571984436	7	2-16,1644-1630;18-21,1628-1625	1-1,1645-1645[UP5];17-17,1629-1629[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GGGAUAGAGAGGAGAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2221_c0_g2_1636_TPlot.pdf
TRINITY_DN2221_c0_g2:1637	si_s70	TRINITY_DN2221_c0_g2	1626	1646	1637	-25.80	-19.80	0.767441860465116	8.5	3-17,1644-1630;19-21,1628-1626	1-2,1646-1645[UP5];18-18,1629-1629[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GGAUAGAGAGGAGAUGGAAAA&ACUUCUAUUUUUUUUCUUUCC	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2221_c0_g2_1637_TPlot.pdf
TRINITY_DN2221_c0_g2:1638	si_s69	TRINITY_DN2221_c0_g2	1627	1647	1638	-23.40	-16.50	0.705128205128205	10	4-18,1644-1630;20-21,1628-1627	1-3,1647-1645[UP5];19-19,1629-1629[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAUAGAGAGGAGAUGGAAAAU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2221_c0_g2_1638_TPlot.pdf
TRINITY_DN2221_c16_g1:103	si_s433	TRINITY_DN2221_c16_g1	92	113	103	-21.10	-14.10	0.66824644549763	7.5	1-4,113-110;6-8,107-105;10-21,103-92	5-5,109-108[AILt];9-9,104-104[SIL]	((((((((((((.(((..((((&))))-.))).))))))))))))	GUAUGAUGUGUAUUUAACUGUU&AACA-AUAAUUACAUAUUAUAU	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN2221_c16_g1_103_TPlot.pdf
TRINITY_DN2221_c16_g1:75	si_s559	TRINITY_DN2221_c16_g1	63	84	75	-27.80	-18.20	0.654676258992806	11.5	5-14,80-71;15-21,69-63	1-4,84-81[UP5];x-x,70-70[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	CUUGUCCAUGAAGGUGUUUCCG&AAUUAAUAUUUUCG-GGACAAG	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN2221_c16_g1_75_TPlot.pdf
TRINITY_DN2221_c16_g1:96	si_s440	TRINITY_DN2221_c16_g1	82	105	96	-21.60	-14.20	0.657407407407407	10.5	3-14,103-92;15-19,88-84	1-2,105-104[UP5];x-x,91-89[BULt];20-21,83-82[UP3]	..(((((...((((((((((((..&..))))))))))))---)))))..	CCGUUAUCCGGUAUGAUGUGUAUU&AUUACAUAUUAUAU---AUAACAA	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN2221_c16_g1_96_TPlot.pdf
TRINITY_DN2221_c16_g1:97	si_s439	TRINITY_DN2221_c16_g1	83	106	97	-21.50	-14.20	0.66046511627907	11.5	4-15,103-92;16-20,88-84	1-3,106-104[UP5];x-x,91-89[BULt];21-21,83-83[UP3]	.(((((...((((((((((((...&...))))))))))))---))))).	CGUUAUCCGGUAUGAUGUGUAUUU&AAUUACAUAUUAUAU---AUAACA	3	0.999463646079035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN2221_c16_g1_97_TPlot.pdf
TRINITY_DN2221_c16_g1:98	si_s438	TRINITY_DN2221_c16_g1	84	107	98	-21.20	-14.80	0.69811320754717	7.5	1-3,107-105;5-16,103-92;17-21,88-84	4-4,104-104[SIL];x-x,91-89[BULt]	(((((...((((((((((((.(((&))).))))))))))))---)))))	GUUAUCCGGUAUGAUGUGUAUUUA&UAAUUACAUAUUAUAU---AUAAC	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN2221_c16_g1_98_TPlot.pdf
TRINITY_DN2221_c16_g1:99	si_s437	TRINITY_DN2221_c16_g1	88	108	99	-19.70	-13.00	0.65989847715736	9	2-4,107-105;6-17,103-92	1-1,108-108[UP5];5-5,104-104[SIL];18-21,91-88[UP3]	....((((((((((((.(((.&.))).))))))))))))....	UCCGGUAUGAUGUGUAUUUAA&AUAAUUACAUAUUAUAUAUAA	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2221_c16_g1_99_TPlot.pdf
TRINITY_DN2221_c4_g1:483	si_a370	TRINITY_DN2221_c4_g1	472	492	483	-29.50	-20.10	0.68135593220339	6	1-4,492-489;6-12,487-481;14-20,479-473	5-5,488-488[SIL];13-13,480-480[SIL];21-21,472-472[UP3]	.(((((((.(((((((.((((&)))).))))))).))))))).	AGAGGUCAAUUUUGAUGCGGU&AUCGGAUCAAAAAUGAUUUCG	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN2221_c4_g1_483_TPlot.pdf
TRINITY_DN22223_c1_g2:25	si_s697	TRINITY_DN22223_c1_g2	14	34	25	-26.90	-17.70	0.657992565055762	11	4-11,31-24;13-19,22-16	1-3,34-32[UP5];12-12,23-23[SIL];20-21,15-14[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	GAGCUAAUGUGUCGACUAUGU&AAUUAGUCGAUUUAUUAGUGA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN22223_c1_g2_25_TPlot.pdf
TRINITY_DN22223_c1_g2:26	si_s696	TRINITY_DN22223_c1_g2	15	35	26	-26.30	-17.70	0.673003802281369	11	5-12,31-24;14-20,22-16	1-4,35-32[UP5];13-13,23-23[SIL];21-21,15-15[UP3]	.(((((((.((((((((....&....)))))))).))))))).	AGCUAAUGUGUCGACUAUGUC&UAAUUAGUCGAUUUAUUAGUG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN22223_c1_g2_26_TPlot.pdf
TRINITY_DN22223_c1_g2:28	si_s694	TRINITY_DN22223_c1_g2	17	37	28	-23.90	-16.30	0.682008368200837	13	7-14,31-24;16-21,22-17	1-6,37-32[UP5];15-15,23-23[SIL]	((((((.((((((((......&......)))))))).))))))	CUAAUGUGUCGACUAUGUCAC&UUUAAUUAGUCGAUUUAUUAG	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN22223_c1_g2_28_TPlot.pdf
TRINITY_DN22224_c0_g1:1032	si_s488	TRINITY_DN22224_c0_g1	1021	1041	1032	-18.30	-12.00	0.655737704918033	9	4-8,1038-1034;10-20,1032-1022	1-3,1041-1039[UP5];9-9,1033-1033[SIL];21-21,1021-1021[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUGUUUAUAUUUUGAUAACUA&UAUUUAUUUAAAUAUAAACAA	0	0.197987424374569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN22224_c0_g1_1032_TPlot.pdf
TRINITY_DN22231_c0_g1:115	si_a19	TRINITY_DN22231_c0_g1	104	125	115	-27.00	-17.90	0.662962962962963	8	2-4,124-122;5-16,120-109;19-21,106-104	1-1,125-125[UP5];x-x,121-121[BULt];17-18,108-107[SIL]	(((..((((((((((((.(((.&.)))-))))))))))))..)))	AGAUAUGGAGAUAGAUACGGCG&AGCC-UAUUUAUUUUUAGUUCU	4	0.999997796202497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN22231_c0_g1_115_TPlot.pdf
TRINITY_DN22231_c0_g1:153	si_s803	TRINITY_DN22231_c0_g1	142	162	153	-26.00	-17.20	0.661538461538462	10	3-12,160-151;14-17,149-146	1-2,162-161[UP5];13-13,150-150[SIL];18-21,145-142[UP3]	....((((.((((((((((..&..)))))))))).))))....	CGGCGGUACCGGAGAUAGAUA&AUUUUAUCUUCGUUACCUUUU	4	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN22231_c0_g1_153_TPlot.pdf
TRINITY_DN22231_c0_g1:304	si_a711	TRINITY_DN22231_c0_g1	293	314	304	-27.90	-18.60	0.666666666666667	9	1-6,314-309;9-17,305-297;20-21,294-293	7-8,308-306[AILt];18-19,296-295[SIL]	((..(((((((((...((((((&))))))-..)))))))))..))	AGGUACGAUUAUUAUGGGGAUG&CAUUCC-AAAAUAAUCGUUACU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN22231_c0_g1_304_TPlot.pdf
TRINITY_DN22231_c0_g1:320	si_a322	TRINITY_DN22231_c0_g1	308	329	320	-27.00	-18.60	0.688888888888889	8.5	2-6,328-324;8-12,322-318;14-21,315-308	1-1,329-329[UP5];7-7,323-323[SIL];13-13,317-316[AILt]	((((((((..(((((.(((((.&.))))).)))))-.))))))))	GGGGAUGAUCGAAAUGAUGGAA&AUCCAUGAUUUU-UUUAUUCCU	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN22231_c0_g1_320_TPlot.pdf
TRINITY_DN22231_c0_g1:668	si_s29	TRINITY_DN22231_c0_g1	656	678	668	-26.40	-17.50	0.662878787878788	7.5	1-5,678-674;6-13,672-665;14-18,663-659	x-x,673-673[BULt];x-x,664-664[BULt];19-21,658-656[UP3]	...(((((.((((((((.(((((&)))))-))))))))-)))))...	UCCAGAGAUUUUAGUUGCCGAUC&GAUUG-CAACUAAA-UCUUUAAU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN22231_c0_g1_668_TPlot.pdf
TRINITY_DN22231_c0_g1:669	si_s28	TRINITY_DN22231_c0_g1	657	679	669	-27.00	-17.60	0.651851851851852	7.5	2-6,678-674;7-14,672-665;15-19,663-659	1-1,679-679[UP5];x-x,673-673[BULt];x-x,664-664[BULt];20-21,658-657[UP3]	..(((((.((((((((.(((((.&.)))))-))))))))-)))))..	CCAGAGAUUUUAGUUGCCGAUCG&UGAUUG-CAACUAAA-UCUUUAA	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN22231_c0_g1_669_TPlot.pdf
TRINITY_DN22231_c0_g1:671	si_s26	TRINITY_DN22231_c0_g1	659	681	671	-26.70	-17.40	0.651685393258427	9.5	4-8,678-674;9-16,672-665;17-21,663-659	1-3,681-679[UP5];x-x,673-673[BULt];x-x,664-664[BULt]	(((((.((((((((.(((((...&...)))))-))))))))-)))))	AGAGAUUUUAGUUGCCGAUCGUU&AUUGAUUG-CAACUAAA-UCUUU	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN22231_c0_g1_671_TPlot.pdf
TRINITY_DN22231_c0_g3:475	si_a555	TRINITY_DN22231_c0_g3	464	484	475	-33.70	-22.10	0.655786350148368	15	7-17,478-468;19-20,466-465	1-6,484-479[UP5];18-18,467-467[SIL];21-21,464-464[UP3]	.((.(((((((((((......&......))))))))))).)).	CCAGGGGGAGAUGGAAGCAAC&UAUUUCUUUAUCUCCCCGUGA	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN22231_c0_g3_475_TPlot.pdf
TRINITY_DN2224_c0_g1:1479	si_a358	TRINITY_DN2224_c0_g1	1466	1488	1479	-29.10	-19.70	0.676975945017182	11	3-11,1486-1478;12-20,1475-1467	1-2,1488-1487[UP5];x-x,1477-1476[BULt];21-21,1466-1466[UP3]	.(((((((((..(((((((((..&..)))))))))--))))))))).	AGAUCUGGUCGAGAAAUGGAAAC&AAUUCUAUUUU--GAUCGGAUCA	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN2224_c0_g1_1479_TPlot.pdf
TRINITY_DN2224_c0_g1:1480	si_a357	TRINITY_DN2224_c0_g1	1467	1489	1480	-28.80	-19.20	0.666666666666667	12	4-12,1486-1478;13-21,1475-1467	1-3,1489-1487[UP5];x-x,1477-1476[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	GAUCUGGUCGAGAAAUGGAAACA&UAAUUCUAUUUU--GAUCGGAUC	2	0.936110413218895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN2224_c0_g1_1480_TPlot.pdf
TRINITY_DN2224_c0_g1:1523	si_a624	TRINITY_DN2224_c0_g1	1513	1533	1523	-32.30	-21.30	0.659442724458204	7.5	1-7,1533-1527;8-14,1525-1519;16-21,1518-1513	x-x,1526-1526[BULt];15-15,x-x[BULq]	((((((-(((((((.(((((((&)))))))-))))))).))))))	GAAUUG-UAUGAUGUCGCCUGG&CUAGGCG-UAUUAUGUCGAUUU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN2224_c0_g1_1523_TPlot.pdf
TRINITY_DN2224_c0_g1:1675	si_a71	TRINITY_DN2224_c0_g1	1664	1684	1675	-23.30	-16.60	0.712446351931331	9	1-7,1684-1678;9-18,1676-1667	8-8,1677-1677[SIL];19-21,1666-1664[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UCCUGAAGGGCGAGUUGAAGG&CUUUCAAAUUGUUUUUCAUUA	4	0.999944831616923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN2224_c0_g1_1675_TPlot.pdf
TRINITY_DN2224_c0_g1:1676	si_a70	TRINITY_DN2224_c0_g1	1665	1685	1676	-23.90	-18.20	0.761506276150628	7.5	1-8,1685-1678;10-19,1676-1667	9-9,1677-1677[SIL];20-21,1666-1665[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	CCUGAAGGGCGAGUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2224_c0_g1_1676_TPlot.pdf
TRINITY_DN2224_c0_g1:1680	si_a66	TRINITY_DN2224_c0_g1	1669	1690	1680	-26.70	-17.50	0.655430711610487	7	1-4,1690-1687;5-12,1685-1678;14-21,1676-1669	x-x,1686-1686[BULt];13-13,1677-1677[SIL]	((((((((.((((((((.((((&))))-)))))))).))))))))	AAGGGCGAGUUGAAGGAGAGUG&CGCU-UCUUUCAAAUUGUUUUU	2	0.999999999293946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2224_c0_g1_1680_TPlot.pdf
TRINITY_DN2224_c0_g1:1681	si_a65	TRINITY_DN2224_c0_g1	1670	1691	1681	-27.70	-18.20	0.657039711191336	7	1-5,1691-1687;6-13,1685-1678;15-21,1676-1670	x-x,1686-1686[BULt];14-14,1677-1677[SIL]	(((((((.((((((((.(((((&)))))-)))))))).)))))))	AGGGCGAGUUGAAGGAGAGUGA&UCGCU-UCUUUCAAAUUGUUUU	2	0.999998394815009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN2224_c0_g1_1681_TPlot.pdf
TRINITY_DN2224_c0_g1:1683	si_a63	TRINITY_DN2224_c0_g1	1672	1693	1683	-30.20	-21.10	0.698675496688742	6.5	1-7,1693-1687;8-15,1685-1678;17-21,1676-1672	x-x,1686-1686[BULt];16-16,1677-1677[SIL]	(((((.((((((((.(((((((&)))))))-)))))))).)))))	GGCGAGUUGAAGGAGAGUGAGU&ACUCGCU-UCUUUCAAAUUGUU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN2224_c0_g1_1683_TPlot.pdf
TRINITY_DN2224_c0_g1:2430	si_a412	TRINITY_DN2224_c0_g1	2417	2439	2430	-18.30	-13.40	0.73224043715847	10	1-10,2439-2430;12-21,2426-2417	11-11,2429-2427[AILt]	((((((((((...((((((((((&))))))))))--.))))))))))	UGUUUGUUUGUAUGUAUGAACAA&UUGUUUAUAU--UUAAAUAAAUA	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2224_c0_g1_2430_TPlot.pdf
TRINITY_DN2224_c0_g1:2431	si_a411	TRINITY_DN2224_c0_g1	2418	2440	2431	-17.90	-12.90	0.720670391061453	9.5	1-11,2440-2430;13-21,2426-2418	12-12,2429-2427[AILt]	(((((((((...(((((((((((&)))))))))))--.)))))))))	GUUUGUUUGUAUGUAUGAACAAA&UUUGUUUAUAU--UUAAAUAAAU	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2224_c0_g1_2431_TPlot.pdf
TRINITY_DN2224_c0_g1:4521	si_a314	TRINITY_DN2224_c0_g1	4510	4530	4521	-27.10	-17.70	0.653136531365314	11	2-6,4529-4525;8-18,4523-4513	1-1,4530-4530[UP5];7-7,4524-4524[SIL];19-21,4512-4510[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	AGUGAUCGUGGGUGCGUUCAG&UUGGAUUUAUCCAUGAUUUUU	4	0.999999962234629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN2224_c0_g1_4521_TPlot.pdf
TRINITY_DN2224_c0_g1:4878	si_s87	TRINITY_DN2224_c0_g1	4867	4888	4878	-32.90	-25.60	0.778115501519757	7.5	1-7,4888-4882;8-20,4880-4868	x-x,4881-4881[BULt];21-21,4867-4867[UP3]	.(((((((((((((.(((((((&)))))))-))))))))))))).	UGGUGGAGGAGGAGCAGAGGAG&UUCCUUU-CUUCUUCUUCGCUU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2224_c0_g1_4878_TPlot.pdf
TRINITY_DN2224_c0_g1:4879	si_s86	TRINITY_DN2224_c0_g1	4868	4889	4879	-32.90	-25.60	0.778115501519757	8	2-8,4888-4882;9-21,4880-4868	1-1,4889-4889[UP5];x-x,4881-4881[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	GGUGGAGGAGGAGCAGAGGAGU&UUUCCUUU-CUUCUUCUUCGCU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2224_c0_g1_4879_TPlot.pdf
TRINITY_DN2224_c0_g1:4881	si_a328	TRINITY_DN2224_c0_g1	4870	4890	4881	-30.10	-21.00	0.697674418604651	9.5	1-9,4890-4882;11-16,4880-4875;18-20,4873-4871	10-10,4881-4881[SIL];17-17,4874-4874[SIL];21-21,4870-4870[UP3]	.(((.((((((.(((((((((&))))))))).)))))).))).	UGGAGGAGGAGCAGAGGAGUC&GAUUUUUUUAUUCCUUGUCCC	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2224_c0_g1_4881_TPlot.pdf
TRINITY_DN2224_c0_g1:4882	si_a327	TRINITY_DN2224_c0_g1	4871	4891	4882	-28.40	-21.10	0.742957746478873	9.5	2-10,4890-4882;12-17,4880-4875;19-21,4873-4871	1-1,4891-4891[UP5];11-11,4881-4881[SIL];18-18,4874-4874[SIL]	(((.((((((.(((((((((.&.))))))))).)))))).)))	GGAGGAGGAGCAGAGGAGUCG&UGAUUUUUUUAUUCCUUGUCC	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2224_c0_g1_4882_TPlot.pdf
TRINITY_DN2224_c0_g1:4887	si_a777	TRINITY_DN2224_c0_g1	4876	4896	4887	-27.00	-19.10	0.707407407407407	6.5	1-6,4896-4891;8-15,4889-4882;17-21,4880-4876	7-7,4890-4890[SIL];16-16,4881-4881[SIL]	(((((.((((((((.((((((&)))))).)))))))).)))))	AGGAGCAGAGGAGUCGAGUCA&UGAUUCAACUCUUCUAUUUUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2224_c0_g1_4887_TPlot.pdf
TRINITY_DN2224_c0_g1:4893	si_a771	TRINITY_DN2224_c0_g1	4882	4902	4893	-29.40	-20.20	0.687074829931973	7.5	1-3,4902-4900;6-12,4897-4891;14-21,4889-4882	4-5,4899-4898[SIL];13-13,4890-4890[SIL]	((((((((.(((((((..(((&)))..))))))).))))))))	AGAGGAGUCGAGUCAAGAAGA&UUUGAUUGAUUCAACUCUUCU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN2224_c0_g1_4893_TPlot.pdf
TRINITY_DN2224_c0_g1:505	si_a192	TRINITY_DN2224_c0_g1	493	514	505	-31.90	-25.30	0.793103448275862	9	2-12,513-503;13-19,501-495	1-1,514-514[UP5];x-x,502-502[BULt];20-21,494-493[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	UGGUUGGUGAAGCGGGGGAAGG&UCUUUCCCUGUU-CACUAAUAA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN2224_c0_g1_505_TPlot.pdf
TRINITY_DN22259_c0_g2:398	si_s291	TRINITY_DN22259_c0_g2	388	407	398	-38.10	-24.80	0.650918635170604	7	1-10,407-398;12-15,396-393;17-21,392-388	11-11,397-397[SIL];16-16,x-x[BULq]	(((((-((((.((((((((((&)))))))))).)))).)))))	CGCGA-UCUGCUUGGCUAGGC&GCCUAGUCGAUUGGAAUUGCG	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN22259_c0_g2_398_TPlot.pdf
TRINITY_DN2226_c0_g1:1864	si_a763	TRINITY_DN2226_c0_g1	1853	1873	1864	-28.80	-20.20	0.701388888888889	7	2-18,1872-1856;20-20,1854-1854	1-1,1873-1873[UP5];19-19,1855-1855[SIL];21-21,1853-1853[UP3]	.(.(((((((((((((((((.&.))))))))))))))))).).	AGCAUCAAUCAAGGACUCAGU&UUUGGGUUUUUGAUUGAUUCA	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2226_c0_g1_1864_TPlot.pdf
TRINITY_DN22287_c0_g1:248	si_s795	TRINITY_DN22287_c0_g1	237	257	248	-30.30	-20.50	0.676567656765677	8	3-17,255-241;20-21,238-237	1-2,257-256[UP5];18-19,240-239[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	ACCUAGAUAAAGUGCGAGUGG&AAGCUCGUAUUUUAUCUUCGU	2	0.992853418057827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN22287_c0_g1_248_TPlot.pdf
TRINITY_DN2229_c0_g1:1106	si_s78	TRINITY_DN2229_c0_g1	1094	1115	1106	-26.20	-19.80	0.755725190839695	6.5	1-14,1115-1102;17-21,1098-1094	15-16,1101-1099[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	AGAGGUCCAGGAAGGAGAAGAA&UUUUUUUCUUUCCU-UUCUUCU	4	0.999999999916152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2229_c0_g1_1106_TPlot.pdf
TRINITY_DN2229_c0_g1:1109	si_s75	TRINITY_DN2229_c0_g1	1094	1118	1109	-24.00	-16.30	0.679166666666667	12.5	4-17,1115-1102;18-21,1097-1094	1-3,1118-1116[UP5];x-x,1101-1098[BULt]	((((....((((((((((((((...&...))))))))))))))----))))	AGAGGUCCAGGAAGGAGAAGAAUAU&UAUUUUUUUUCUUUCCU----UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2229_c0_g1_1109_TPlot.pdf
TRINITY_DN2229_c0_g1:1111	si_s73	TRINITY_DN2229_c0_g1	1100	1120	1111	-24.00	-15.70	0.654166666666667	13.5	6-19,1115-1102	1-5,1120-1116[UP5];20-21,1101-1100[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCAGGAAGGAGAAGAAUAUCU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2229_c0_g1_1111_TPlot.pdf
TRINITY_DN2229_c0_g1:1112	si_s72	TRINITY_DN2229_c0_g1	1101	1121	1112	-24.10	-15.70	0.651452282157676	14.5	7-20,1115-1102	1-6,1121-1116[UP5];21-21,1101-1101[UP3]	.((((((((((((((......&......)))))))))))))).	CAGGAAGGAGAAGAAUAUCUU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2229_c0_g1_1112_TPlot.pdf
TRINITY_DN2229_c0_g1:3222	si_a327	TRINITY_DN2229_c0_g1	3210	3231	3222	-28.40	-18.50	0.651408450704225	8	1-9,3231-3223;12-19,3220-3213;20-21,3211-3210	10-11,3222-3221[SIL];x-x,3212-3212[BULt]	((.((((((((..(((((((((&)))))))))..))))))))-))	GGAAUGAGGAACUAGAAAGUCA&UGAUUUUUUUAUUCCUUGU-CC	2	0.999999138489842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2229_c0_g1_3222_TPlot.pdf
TRINITY_DN2229_c0_g1:3319	si_s86	TRINITY_DN2229_c0_g1	3308	3336	3319	-32.90	-22.00	0.668693009118541	21	1-7,3336-3330;8-19,3321-3310	x-x,3329-3322[BULt];20-21,3309-3308[UP3]	..((((((((((((........(((((((&)))))))--------))))))))))))..	AUCGAAGAAGAGGAACAUGACAGAGGAGA&UUUCCUU--------UCUUCUUCUUCGCU	2	0.999999999998987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2229_c0_g1_3319_TPlot.pdf
TRINITY_DN2229_c0_g1:3321	si_s84	TRINITY_DN2229_c0_g1	3310	3338	3321	-32.30	-22.20	0.687306501547988	22	3-9,3336-3330;10-21,3321-3310	1-2,3338-3337[UP5];x-x,3329-3322[BULt]	((((((((((((........(((((((..&..)))))))--------))))))))))))	CGAAGAAGAGGAACAUGACAGAGGAGAUA&UCUUUCCUU--------UCUUCUUCUUCG	3	0.999999999999946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2229_c0_g1_3321_TPlot.pdf
TRINITY_DN2229_c0_g1:3396	si_s73	TRINITY_DN2229_c0_g1	3384	3406	3396	-24.00	-15.80	0.658333333333333	6.5	2-7,3405-3400;8-17,3398-3389;18-21,3387-3384	1-1,3406-3406[UP5];x-x,3399-3399[BULt];x-x,3388-3388[BULt]	((((.((((((((((.((((((.&.))))))-))))))))))-))))	AAGGUGAAAGAGAAAUAGAUAGU&UCUAUUU-UUUUUCUUUC-CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2229_c0_g1_3396_TPlot.pdf
TRINITY_DN2229_c2_g1:1627	si_a471	TRINITY_DN2229_c2_g1	1616	1641	1627	-21.10	-13.90	0.658767772511848	15.5	2-7,1640-1635;8-20,1629-1617	1-1,1641-1641[UP5];x-x,1634-1630[BULt];21-21,1616-1616[UP3]	.(((((((((((((.....((((((.&.))))))-----))))))))))))).	UUAUGGCGAUAGUUCGGCAGCAUAUC&AAUAUGU-----AAUUAUUGUUAUAU	3	0.999999975660948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2229_c2_g1_1627_TPlot.pdf
TRINITY_DN222_c0_g1:10190	si_s415	TRINITY_DN222_c0_g1	10179	10199	10190	-26.60	-17.70	0.665413533834586	11	4-16,10196-10184	1-3,10199-10197[UP5];17-21,10183-10179[UP3]	.....(((((((((((((...&...))))))))))))).....	GGACCGUGGAAUAUGUCGAGA&AAACGACAUAUUCUAUAUAAC	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN222_c0_g1_10190_TPlot.pdf
TRINITY_DN222_c0_g1:10191	si_s414	TRINITY_DN222_c0_g1	10180	10200	10191	-24.90	-17.70	0.710843373493976	12	5-17,10196-10184	1-4,10200-10197[UP5];18-21,10183-10180[UP3]	....(((((((((((((....&....)))))))))))))....	GACCGUGGAAUAUGUCGAGAA&AAAACGACAUAUUCUAUAUAA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN222_c0_g1_10191_TPlot.pdf
TRINITY_DN222_c0_g1:10192	si_s413	TRINITY_DN222_c0_g1	10181	10201	10192	-24.80	-17.70	0.713709677419355	13	6-18,10196-10184	1-5,10201-10197[UP5];19-21,10183-10181[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCGUGGAAUAUGUCGAGAAG&AAAAACGACAUAUUCUAUAUA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN222_c0_g1_10192_TPlot.pdf
TRINITY_DN222_c0_g1:10373	si_s811	TRINITY_DN222_c0_g1	10362	10383	10373	-26.40	-17.20	0.651515151515151	12	1-6,10383-10378;8-16,10375-10367	7-7,10377-10376[AILt];17-21,10366-10362[UP3]	.....(((((((((..((((((&))))))-.))))))))).....	CGAAAAAGAGGAGGAGGACGAA&UUCGUU-ACCUUUUCUUAAUAA	3	0.999999998448973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN222_c0_g1_10373_TPlot.pdf
TRINITY_DN222_c0_g1:10374	si_s810	TRINITY_DN222_c0_g1	10363	10384	10374	-27.90	-20.10	0.720430107526882	10.5	1-7,10384-10378;9-17,10375-10367	8-8,10377-10376[AILt];18-21,10366-10363[UP3]	....(((((((((..(((((((&)))))))-.)))))))))....	GAAAAAGAGGAGGAGGACGAAG&CUUCGUU-ACCUUUUCUUAAUA	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN222_c0_g1_10374_TPlot.pdf
TRINITY_DN222_c0_g1:1211	si_a410	TRINITY_DN222_c0_g1	1200	1220	1211	-17.80	-12.20	0.685393258426966	9	1-16,1220-1205	17-21,1204-1200[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCAACUUAAAUAUAGAUAGGA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999998783484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN222_c0_g1_1211_TPlot.pdf
TRINITY_DN222_c0_g1:1215	si_a406	TRINITY_DN222_c0_g1	1204	1225	1215	-19.80	-13.50	0.681818181818182	8	2-7,1224-1219;8-20,1217-1205	1-1,1225-1225[UP5];x-x,1218-1218[BULt];21-21,1204-1204[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CUUAAAUAUAGAUAGGAACAGC&AUUGUUU-UGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN222_c0_g1_1215_TPlot.pdf
TRINITY_DN2230_c0_g1:3908	si_a318	TRINITY_DN2230_c0_g1	3897	3918	3908	-22.50	-14.70	0.653333333333333	7.5	1-7,3918-3912;9-20,3909-3898	8-8,3911-3910[AILt];21-21,3897-3897[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	UUGAAGAGAUCAUAUGAUGAAU&AUUUAUC-CAUGAUUUUUUUAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2230_c0_g1_3908_TPlot.pdf
TRINITY_DN2230_c0_g1:462	si_a76	TRINITY_DN2230_c0_g1	451	471	462	-21.20	-14.00	0.660377358490566	7.5	2-5,470-467;7-18,465-454	1-1,471-471[UP5];6-6,466-466[SIL];19-21,453-451[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UCCAAUGAUGAAGAAGAAUUG&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999998344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN2230_c0_g1_462_TPlot.pdf
TRINITY_DN2230_c0_g1:468	si_a70	TRINITY_DN2230_c0_g1	457	476	468	-23.90	-16.50	0.690376569037657	7	1-8,476-469;10-11,468-467;13-21,465-457	9-9,x-x[BULq];12-12,466-466[SIL]	(((((((((.((-((((((((&)))))))).)).)))))))))	GAUGAAGAAGAA-UUGGGAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999999647774421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2230_c0_g1_468_TPlot.pdf
TRINITY_DN2230_c0_g1:470	si_s81	TRINITY_DN2230_c0_g1	459	479	470	-28.90	-20.10	0.695501730103806	8	2-9,478-471;12-20,468-460	1-1,479-479[UP5];10-11,470-469[SIL];21-21,459-459[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	UGAAGAAGAAUUGGGAGAAAU&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2230_c0_g1_470_TPlot.pdf
TRINITY_DN2230_c0_g2:1519	si_s806	TRINITY_DN2230_c0_g2	1505	1528	1519	-28.60	-19.20	0.671328671328671	15.5	4-12,1525-1517;13-20,1513-1506	1-3,1528-1526[UP5];x-x,1516-1514[BULt];21-21,1505-1505[UP3]	.((((((((...(((((((((...&...)))))))))---)))))))).	CAGAGAAGGAGUUGGCGAGGAGAA&UUAUCUUCGUUA---CCUUUUCUU	4	0.999999999830839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2230_c0_g2_1519_TPlot.pdf
TRINITY_DN2230_c0_g2:1800	si_a216	TRINITY_DN2230_c0_g2	1789	1810	1800	-28.30	-20.30	0.717314487632509	5.5	1-7,1810-1804;8-14,1802-1796;17-21,1793-1789	x-x,1803-1803[BULt];15-16,1795-1794[SIL]	(((((..(((((((.(((((((&)))))))-)))))))..)))))	GGAACUCGAGUUUAUGUUAGUC&GACUAAU-UAAACUCAUGUUUC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a216_TRINITY_DN2230_c0_g2_1800_TPlot.pdf
TRINITY_DN2230_c0_g2:592	si_a75	TRINITY_DN2230_c0_g2	581	601	592	-21.30	-15.30	0.71830985915493	6	1-5,601-597;8-21,594-581	6-7,596-595[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UUAAUAAUGGAGAAAUAUUUG&CAAAUUGUUUUUCAUUAUUAA	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2230_c0_g2_592_TPlot.pdf
TRINITY_DN2230_c0_g2:593	si_a74	TRINITY_DN2230_c0_g2	582	602	593	-22.20	-14.50	0.653153153153153	6.5	2-6,601-597;9-21,594-582	1-1,602-602[UP5];7-8,596-595[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	UAAUAAUGGAGAAAUAUUUGC&UCAAAUUGUUUUUCAUUAUUA	3	0.999999999996899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN2230_c0_g2_593_TPlot.pdf
TRINITY_DN2230_c0_g2:842	si_a301	TRINITY_DN2230_c0_g2	831	851	842	-27.80	-19.10	0.68705035971223	12.5	6-11,846-841;13-21,839-831	1-5,851-847[UP5];12-12,840-840[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GAAUCUAGGGGAAUCUGAUGU&AAAAAAGAUUCGCUUGGAUUU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN2230_c0_g2_842_TPlot.pdf
TRINITY_DN22310_c0_g1:14	si_a576	TRINITY_DN22310_c0_g1	3	23	14	-28.70	-19.90	0.693379790940767	7	1-3,23-21;5-13,19-11;15-19,9-5	4-4,20-20[SIL];14-14,10-10[SIL];20-21,4-3[UP3]	..(((((.(((((((((.(((&))).))))))))).)))))..	UACUUGUAACAGACAUGGGAU&AUCGUAUGUUUGUAACAAGAA	1	0.00834246638460856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN22310_c0_g1_14_TPlot.pdf
TRINITY_DN22310_c0_g1:17	si_a573	TRINITY_DN22310_c0_g1	6	26	17	-28.70	-19.10	0.665505226480836	6.5	2-6,25-21;8-16,19-11;18-21,9-6	1-1,26-26[UP5];7-7,20-20[SIL];17-17,10-10[SIL]	((((.(((((((((.(((((.&.))))).))))))))).))))	UUGUAACAGACAUGGGAUUUU&UGAAUCGUAUGUUUGUAACAA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN22310_c0_g1_17_TPlot.pdf
TRINITY_DN2231_c0_g1:2914	si_a595	TRINITY_DN2231_c0_g1	2900	2923	2914	-30.30	-20.30	0.66996699669967	11.5	3-15,2921-2909;16-17,2905-2904	1-2,2923-2922[UP5];x-x,2908-2906[BULt];18-21,2903-2900[UP3]	....((...(((((((((((((..&..)))))))))))))---))....	UUUGGCAAAGAGGAUUCUGUCCAG&AAGGACAGAAUUUUC---GCAAUU	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN2231_c0_g1_2914_TPlot.pdf
TRINITY_DN2231_c0_g1:3017	si_a65	TRINITY_DN2231_c0_g1	3006	3028	3017	-27.70	-18.40	0.664259927797834	8	1-6,3028-3023;7-13,3020-3014;15-21,3012-3006	x-x,3022-3021[BULt];14-14,3013-3013[SIL]	(((((((.(((((((..((((((&))))))--))))))).)))))))	GGAACAAGUUGGGAGCAAAGCGA&UCGCUU--CUUUCAAAUUGUUUU	4	0.999999996956449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN2231_c0_g1_3017_TPlot.pdf
TRINITY_DN2231_c0_g1:3175	si_a164	TRINITY_DN2231_c0_g1	3160	3185	3175	-35.60	-23.80	0.668539325842697	14.5	1-4,3185-3182;5-12,3180-3173;13-19,3168-3162	x-x,3181-3181[BULt];x-x,3172-3169[BULt];20-21,3161-3160[UP3]	..(((((((....((((((((.((((&))))-))))))))----)))))))..	CUGGCGGGUGGCAGAAUGGGUGUGAC&GUCA-AUCUAUUC----ACCCGUCUA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a164_TRINITY_DN2231_c0_g1_3175_TPlot.pdf
TRINITY_DN2231_c0_g1:3347	si_a638	TRINITY_DN2231_c0_g1	3336	3356	3347	-24.40	-16.50	0.676229508196721	10	1-14,3356-3343	15-21,3342-3336[UP3]	.......((((((((((((((&)))))))))))))).......	GACGGAUCUCAAGGGAAUCGA&UCGAUUUUUUUGAGUAAUAUA	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN2231_c0_g1_3347_TPlot.pdf
TRINITY_DN2231_c0_g1:3871	si_s68	TRINITY_DN2231_c0_g1	3860	3882	3871	-23.10	-15.10	0.653679653679654	9	2-8,3881-3875;10-21,3871-3860	1-1,3882-3882[UP5];9-9,3874-3872[AILt]	((((((((((((...(((((((.&.)))))))--.))))))))))))	AGAGAAAGAAGACAAAGAAGUUC&CAACUUCU--AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2231_c0_g1_3871_TPlot.pdf
TRINITY_DN2231_c0_g1:493	si_s273	TRINITY_DN2231_c0_g1	479	502	493	-29.50	-19.22	0.651525423728814	14	6-14,497-489;17-21,483-479	1-5,502-498[UP5];15-16,488-484[AILt]	(((((.....(((((((((.....&.....)))))))))---..)))))	GGCGUUGUGCUAUGUCGAUGUCUC&AAAAAAUCGACAUA---AUACGCC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s273_TRINITY_DN2231_c0_g1_493_TPlot.pdf
TRINITY_DN2231_c0_g1:663	si_a113	TRINITY_DN2231_c0_g1	652	672	663	-26.20	-17.60	0.67175572519084	14.5	7-18,666-655	1-6,672-667[UP5];19-21,654-652[UP3]	...((((((((((((......&......))))))))))))...	AUGAAAACGAGCUCGAGCUGG&AAAAUACGAGCUUGUUUUAUA	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN2231_c0_g1_663_TPlot.pdf
TRINITY_DN2231_c0_g1:664	si_a112	TRINITY_DN2231_c0_g1	653	673	664	-26.20	-17.60	0.67175572519084	15.5	8-19,666-655	1-7,673-667[UP5];20-21,654-653[UP3]	..((((((((((((.......&.......))))))))))))..	UGAAAACGAGCUCGAGCUGGU&UAAAAUACGAGCUUGUUUUAU	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN2231_c0_g1_664_TPlot.pdf
TRINITY_DN2231_c0_g1:665	si_a111	TRINITY_DN2231_c0_g1	654	674	665	-26.20	-17.60	0.67175572519084	16.5	9-20,666-655	1-8,674-667[UP5];21-21,654-654[UP3]	.((((((((((((........&........)))))))))))).	GAAAACGAGCUCGAGCUGGUC&AUAAAAUACGAGCUUGUUUUA	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN2231_c0_g1_665_TPlot.pdf
TRINITY_DN22320_c0_g1:600	si_a502	TRINITY_DN22320_c0_g1	589	609	600	-32.10	-21.30	0.663551401869159	14	8-21,602-589	1-7,609-603[UP5]	((((((((((((((.......&.......))))))))))))))	AUUCCAAGGAAGAUUAUUAUG&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999999538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN22320_c0_g1_600_TPlot.pdf
TRINITY_DN22320_c0_g1:94	si_s48	TRINITY_DN22320_c0_g1	78	103	94	-28.80	-19.80	0.6875	8	2-18,102-86;19-21,80-78	1-1,103-103[UP5];x-x,85-81[BULt]	(((.....(((((((((((((((((.&.)))))))))))))))))-----)))	GCUUCCAAAACUUGAAAUCUGAUUAC&AUAAUUGGAUUUCAAGUU-----AGC	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN22320_c0_g1_94_TPlot.pdf
TRINITY_DN22331_c1_g1:129	si_a148	TRINITY_DN22331_c1_g1	121	138	129	-30.30	-21.20	0.6996699669967	8	1-12,138-127;16-19,126-123	13-15,x-x[BULq];20-21,122-121[UP3]	..((((---((((((((((((&))))))))))))...))))..	CCGACC---AGACAGCAGCGA&UCGUUGUUGUUUUAAGGUCAA	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN22331_c1_g1_129_TPlot.pdf
TRINITY_DN22336_c0_g4:56	si_a473	TRINITY_DN22336_c0_g4	45	65	56	-23.00	-17.80	0.773913043478261	8.5	4-19,62-47	1-3,65-63[UP5];20-21,46-45[UP3]	..((((((((((((((((...&...))))))))))))))))..	UGAUAUGACAAUAGUUACGAG&UAUGUAAUUAUUGUUAUAUAG	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN22336_c0_g4_56_TPlot.pdf
TRINITY_DN22336_c0_g4:59	si_a470	TRINITY_DN22336_c0_g4	48	68	59	-21.30	-16.20	0.76056338028169	12.5	7-21,62-48	1-6,68-63[UP5]	(((((((((((((((......&......)))))))))))))))	UAUGACAAUAGUUACGAGAAA&UAAUAUGUAAUUAUUGUUAUA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN22336_c0_g4_59_TPlot.pdf
TRINITY_DN22336_c0_g4:66	si_a75	TRINITY_DN22336_c0_g4	52	75	66	-21.30	-14.90	0.699530516431925	7.5	1-13,75-63;14-19,59-54	x-x,62-60[BULt];20-21,53-52[UP3]	..((((((...(((((((((((((&)))))))))))))---))))))..	ACAAUAGUUACGAGAAACGAUUUG&CAAAUUGUUUUUC---AUUAUUAA	4	0.999997796202497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN22336_c0_g4_66_TPlot.pdf
TRINITY_DN22339_c0_g1:2085	si_s76	TRINITY_DN22339_c0_g1	2073	2094	2085	-23.60	-15.90	0.673728813559322	6.5	1-7,2094-2088;9-10,2086-2085;11-19,2083-2075	8-8,2087-2087[SIL];x-x,2084-2084[BULt];20-21,2074-2073[UP3]	..(((((((((.((.(((((((&))))))).))-)))))))))..	ACGAAGGGAAAUGAUAAAAAAU&AUUUUUUUUC-UUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN22339_c0_g1_2085_TPlot.pdf
TRINITY_DN22346_c3_g1:53	si_a761	TRINITY_DN22346_c3_g1	41	62	53	-30.10	-19.60	0.651162790697674	11	1-3,62-60;6-14,57-49;16-20,46-42	4-5,59-58[SIL];15-15,48-47[AILt];21-21,41-41[UP3]	.(((((..(((((((((..(((&)))..)))))))))-.))))).	UAUCAAGCCAGAGGCCCUCGGG&CCUUUGGGUUUUUG-AUUGAUU	1	0.276222590157722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN22346_c3_g1_53_TPlot.pdf
TRINITY_DN22349_c0_g1:2039	si_a573	TRINITY_DN22349_c0_g1	2029	2048	2039	-28.70	-19.20	0.668989547038327	7	2-12,2047-2037;15-19,2035-2031	1-1,2048-2048[UP5];13-14,2036-2036[AILq];20-21,2030-2029[UP3]	..(((((.-(((((((((((.&.)))))))))))..)))))..	AAGUUACU-ACGUAUGAUUCG&UGAAUCGUAUGUUUGUAACAA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN22349_c0_g1_2039_TPlot.pdf
TRINITY_DN22349_c0_g1:567	si_a409	TRINITY_DN22349_c0_g1	556	576	567	-19.50	-14.40	0.738461538461539	7.5	1-7,576-570;9-18,568-559	8-8,569-569[SIL];19-21,558-556[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UUUUUUGAAUAUGUACAGAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN22349_c0_g1_567_TPlot.pdf
TRINITY_DN22349_c0_g1:568	si_a408	TRINITY_DN22349_c0_g1	557	577	568	-20.10	-14.60	0.72636815920398	7.5	2-8,576-570;10-19,568-559	1-1,577-577[UP5];9-9,569-569[SIL];20-21,558-557[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UUUUUGAAUAUGUACAGAACU&UGUUUUGUUUAUAUUUAAAUA	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN22349_c0_g1_568_TPlot.pdf
TRINITY_DN2234_c0_g1:305	si_s814	TRINITY_DN2234_c0_g1	294	314	305	-26.60	-17.50	0.657894736842105	11	1-13,314-302	14-21,301-294[UP3]	........(((((((((((((&)))))))))))))........	GACAUAACAGGAGAAGGUAGC&GUUACCUUUUCUUAAUAAUGA	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN2234_c0_g1_305_TPlot.pdf
TRINITY_DN2234_c0_g1:308	si_s811	TRINITY_DN2234_c0_g1	297	317	308	-26.40	-21.60	0.818181818181818	8	1-16,317-302	17-21,301-297[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUAACAGGAGAAGGUAGCGAG&UUCGUUACCUUUUCUUAAUAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN2234_c0_g1_308_TPlot.pdf
TRINITY_DN2234_c0_g1:315	si_s804	TRINITY_DN2234_c0_g1	304	324	315	-27.90	-19.80	0.709677419354839	15.5	8-21,317-304	1-7,324-318[UP5]	((((((((((((((.......&.......))))))))))))))	GAGAAGGUAGCGAGUAUUCAA&UUUUAUCUUCGUUACCUUUUC	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN2234_c0_g1_315_TPlot.pdf
TRINITY_DN2234_c0_g1:504	si_a68	TRINITY_DN2234_c0_g1	491	513	504	-25.40	-17.00	0.669291338582677	7	2-16,512-498;17-20,495-492	1-1,513-513[UP5];x-x,497-496[BULt];21-21,491-491[UP3]	.((((..(((((((((((((((.&.)))))))))))))))--)))).	AGAAAAUGAUAGUUUGGAAGAAA&CUUCUUUCAAAUUGUU--UUUCA	3	0.999999999989552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2234_c0_g1_504_TPlot.pdf
TRINITY_DN22376_c0_g1:447	si_s775	TRINITY_DN22376_c0_g1	436	456	447	-25.00	-18.70	0.748	8.5	3-17,454-440	1-2,456-455[UP5];18-21,439-436[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAUCUUGUAGCAGUAGUAAAA&AAUUACUAUUGCUAUAAAACA	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN22376_c0_g1_447_TPlot.pdf
TRINITY_DN2237_c0_g2:228	si_s630	TRINITY_DN2237_c0_g2	217	238	228	-35.60	-24.40	0.685393258426966	9	3-9,236-230;10-17,228-221;20-21,218-217	1-2,238-237[UP5];x-x,229-229[BULt];18-19,220-219[SIL]	((..((((((((.(((((((..&..)))))))-))))))))..))	GCCUACGCCUGCUGAGAAGAAA&GAUCUUUUC-GUAGGCGUUUGC	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN2237_c0_g2_228_TPlot.pdf
TRINITY_DN2237_c0_g2:44	si_s629	TRINITY_DN2237_c0_g2	32	53	44	-34.60	-23.80	0.687861271676301	10	4-10,50-44;11-20,42-33	1-3,53-51[UP5];x-x,43-43[BULt];21-21,32-32[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	AAAACGCCUGCUGAGAAGAAAG&CGAUCUUUUC-GUAGGCGUUUG	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN2237_c0_g2_44_TPlot.pdf
TRINITY_DN2237_c0_g2:45	si_s628	TRINITY_DN2237_c0_g2	33	54	45	-35.40	-23.40	0.661016949152542	10.5	5-11,50-44;12-21,42-33	1-4,54-51[UP5];x-x,43-43[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	AAACGCCUGCUGAGAAGAAAGA&GCGAUCUUUUC-GUAGGCGUUU	4	0.999996457062207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN2237_c0_g2_45_TPlot.pdf
TRINITY_DN22383_c0_g1:1062	si_a150	TRINITY_DN22383_c0_g1	1047	1071	1062	-29.90	-20.80	0.695652173913044	14	1-10,1071-1062;11-17,1057-1051	x-x,1061-1058[BULt];18-21,1050-1047[UP3]	....(((((((....((((((((((&))))))))))----)))))))....	UGAAGACCUUAUACCAAGCAGCAAC&GUUGUUGUUU----UAAGGUCAAUC	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN22383_c0_g1_1062_TPlot.pdf
TRINITY_DN22383_c0_g1:1063	si_a149	TRINITY_DN22383_c0_g1	1048	1072	1063	-29.40	-20.90	0.710884353741497	14	2-11,1071-1062;12-18,1057-1051	1-1,1072-1072[UP5];x-x,1061-1058[BULt];19-21,1050-1048[UP3]	...(((((((....((((((((((.&.))))))))))----)))))))...	GAAGACCUUAUACCAAGCAGCAACA&CGUUGUUGUUU----UAAGGUCAAU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN22383_c0_g1_1063_TPlot.pdf
TRINITY_DN22389_c0_g1:3903	si_s320	TRINITY_DN22389_c0_g1	3892	3913	3903	-31.00	-20.90	0.674193548387097	9	1-6,3913-3908;7-15,3906-3898	x-x,3907-3907[BULt];16-21,3897-3892[UP3]	......(((((((((.((((((&))))))-)))))))))......	CACACAUGUAGCAAGAAAGGAC&GUCCUU-CUUGUUACAAACAUA	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN22389_c0_g1_3903_TPlot.pdf
TRINITY_DN22389_c0_g1:3904	si_s319	TRINITY_DN22389_c0_g1	3893	3914	3904	-31.30	-21.70	0.693290734824281	8	1-7,3914-3908;8-16,3906-3898	x-x,3907-3907[BULt];17-21,3897-3893[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	ACACAUGUAGCAAGAAAGGACA&UGUCCUU-CUUGUUACAAACAU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN22389_c0_g1_3904_TPlot.pdf
TRINITY_DN2238_c0_g1:925	si_s422	TRINITY_DN2238_c0_g1	914	934	925	-21.30	-18.70	0.877934272300469	6.5	1-17,934-918	18-21,917-914[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUAAGUUGUUAUGUAGGAUAU&AUAUUCUAUAUAACAAUAAUU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2238_c0_g1_925_TPlot.pdf
TRINITY_DN2239_c0_g1:1781	si_a13	TRINITY_DN2239_c0_g1	1770	1791	1781	-26.80	-17.50	0.652985074626866	9.5	1-9,1791-1783;10-14,1781-1777	x-x,1782-1782[BULt];15-21,1776-1770[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GCCUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN2239_c0_g1_1781_TPlot.pdf
TRINITY_DN2239_c0_g1:1783	si_a12	TRINITY_DN2239_c0_g1	1771	1792	1783	-26.80	-17.80	0.664179104477612	9.5	2-10,1791-1783;11-15,1781-1777	1-1,1792-1792[UP5];x-x,1782-1782[BULt];16-21,1776-1771[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	CCUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN2239_c0_g1_1783_TPlot.pdf
TRINITY_DN22400_c1_g2:381	si_a486	TRINITY_DN22400_c1_g2	370	390	381	-24.90	-16.50	0.662650602409639	7.5	1-14,390-377;17-19,374-372	15-16,376-375[SIL];20-21,371-370[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUAUGUAG&UUAUAUAGAAUAUGUCGUUUU	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN22400_c1_g2_381_TPlot.pdf
TRINITY_DN2240_c0_g1:1220	si_a336	TRINITY_DN2240_c0_g1	1209	1229	1220	-31.20	-20.40	0.653846153846154	10.5	1-14,1229-1216	15-21,1215-1209[UP3]	.......((((((((((((((&)))))))))))))).......	ACCGUGCUGGGAUGAGGAGUA&UAUUCCUUGUCCCGAAAAUAU	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN2240_c0_g1_1220_TPlot.pdf
TRINITY_DN2240_c0_g1:1221	si_a335	TRINITY_DN2240_c0_g1	1210	1230	1221	-31.10	-20.50	0.659163987138264	10.5	2-15,1229-1216	1-1,1230-1230[UP5];16-21,1215-1210[UP3]	......((((((((((((((.&.))))))))))))))......	CCGUGCUGGGAUGAGGAGUAC&UUAUUCCUUGUCCCGAAAAUA	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN2240_c0_g1_1221_TPlot.pdf
TRINITY_DN2240_c0_g1:1222	si_a334	TRINITY_DN2240_c0_g1	1211	1231	1222	-30.70	-20.50	0.667752442996743	11.5	3-16,1229-1216	1-2,1231-1230[UP5];17-21,1215-1211[UP3]	.....((((((((((((((..&..)))))))))))))).....	CGUGCUGGGAUGAGGAGUACG&UUUAUUCCUUGUCCCGAAAAU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN2240_c0_g1_1222_TPlot.pdf
TRINITY_DN2240_c0_g1:1223	si_a333	TRINITY_DN2240_c0_g1	1212	1232	1223	-30.60	-20.50	0.669934640522876	12.5	4-17,1229-1216	1-3,1232-1230[UP5];18-21,1215-1212[UP3]	....((((((((((((((...&...))))))))))))))....	GUGCUGGGAUGAGGAGUACGC&UUUUAUUCCUUGUCCCGAAAA	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2240_c0_g1_1223_TPlot.pdf
TRINITY_DN2240_c0_g1:1225	si_a331	TRINITY_DN2240_c0_g1	1214	1234	1225	-30.60	-20.50	0.669934640522876	13.5	6-19,1229-1216	1-5,1234-1230[UP5];20-21,1215-1214[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCUGGGAUGAGGAGUACGCCG&UUUUUUAUUCCUUGUCCCGAA	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2240_c0_g1_1225_TPlot.pdf
TRINITY_DN22415_c0_g1:1372	si_a75	TRINITY_DN22415_c0_g1	1361	1381	1372	-21.30	-13.90	0.652582159624413	8.5	1-8,1381-1374;10-16,1372-1366	9-9,1373-1373[SIL];17-21,1365-1361[UP3]	.....(((((((.((((((((&)))))))).))))))).....	CUUCCAGUGAAACACAGUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN22415_c0_g1_1372_TPlot.pdf
TRINITY_DN22415_c0_g1:2219	si_a110	TRINITY_DN22415_c0_g1	2208	2228	2219	-27.80	-20.40	0.733812949640288	10	5-18,2224-2211	1-4,2228-2225[UP5];19-21,2210-2208[UP3]	...((((((((((((((....&....))))))))))))))...	CUUACAAGCUCGUAUUUAUUG&GAUAAAAUACGAGCUUGUUUU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN22415_c0_g1_2219_TPlot.pdf
TRINITY_DN22415_c0_g1:547	si_a17	TRINITY_DN22415_c0_g1	533	556	547	-24.30	-15.90	0.654320987654321	10	1-7,556-550;9-12,548-545;13-21,541-533	8-8,549-549[SIL];x-x,544-542[BULt]	(((((((((...((((.(((((((&))))))).))))---)))))))))	AACUGAAAGAACUAGACAGGCUUU&AAAGCCUAUUUA---UUUUUAGUU	3	0.999999999064973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN22415_c0_g1_547_TPlot.pdf
TRINITY_DN22418_c0_g1:355	si_a20	TRINITY_DN22418_c0_g1	344	366	355	-26.70	-20.20	0.756554307116105	8	1-7,366-360;8-15,357-350;17-21,348-344	x-x,359-358[BULt];16-16,349-349[SIL]	(((((.((((((((..(((((((&)))))))--)))))))).)))))	UAGAAGUGGAAGUAGAAGUAGGC&GCCUAUU--UAUUUUUAGUUCUA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN22418_c0_g1_355_TPlot.pdf
TRINITY_DN22418_c0_g1:356	si_a19	TRINITY_DN22418_c0_g1	345	367	356	-27.00	-18.80	0.696296296296296	9	2-8,366-360;9-16,357-350;18-21,348-345	1-1,367-367[UP5];x-x,359-358[BULt];17-17,349-349[SIL]	((((.((((((((..(((((((.&.)))))))--)))))))).))))	AGAAGUGGAAGUAGAAGUAGGCA&AGCCUAUU--UAUUUUUAGUUCU	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN22418_c0_g1_356_TPlot.pdf
TRINITY_DN22418_c0_g1:357	si_a18	TRINITY_DN22418_c0_g1	346	368	357	-26.30	-17.70	0.673003802281369	11	3-9,366-360;10-17,357-350;19-21,348-346	1-2,368-367[UP5];x-x,359-358[BULt];18-18,349-349[SIL]	(((.((((((((..(((((((..&..)))))))--)))))))).)))	GAAGUGGAAGUAGAAGUAGGCAU&AAGCCUAUU--UAUUUUUAGUUC	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN22418_c0_g1_357_TPlot.pdf
TRINITY_DN22418_c0_g1:360	si_s63	TRINITY_DN22418_c0_g1	349	371	360	-25.80	-16.80	0.651162790697674	11.5	1-4,371-368;5-6,366-365;8-19,362-351	x-x,367-367[BULt];7-7,364-363[AILt];20-21,350-349[UP3]	..((((((((((((..((.((((&))))-))-.))))))))))))..	GUGGAAGUAGAAGUAGGCAUGGC&GUUA-GC-AACUUCUAUUUUUUU	4	0.999999998522218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN22418_c0_g1_360_TPlot.pdf
TRINITY_DN22418_c0_g1:705	si_a70	TRINITY_DN22418_c0_g1	695	714	705	-23.90	-16.10	0.673640167364017	5.5	1-11,714-704;13-21,703-695	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GGUGGGGAA-AAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999997046176886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN22418_c0_g1_705_TPlot.pdf
TRINITY_DN22418_c0_g1:706	si_a69	TRINITY_DN22418_c0_g1	696	715	706	-24.00	-16.70	0.695833333333333	4	1-12,715-704;14-21,703-696	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	GUGGGGAA-AAUUUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	2	0.999856505208577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN22418_c0_g1_706_TPlot.pdf
TRINITY_DN22418_c0_g1:707	si_a68	TRINITY_DN22418_c0_g1	697	716	707	-25.40	-18.10	0.71259842519685	3.5	1-13,716-704;15-21,703-697	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	UGGGGAA-AAUUUGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.997224788720479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN22418_c0_g1_707_TPlot.pdf
TRINITY_DN22418_c0_g1:763	si_s804	TRINITY_DN22418_c0_g1	751	772	763	-27.90	-18.70	0.670250896057348	5	2-6,771-767;8-18,765-755;19-21,753-751	1-1,772-772[UP5];7-7,766-766[SIL];x-x,754-754[BULt]	(((.(((((((((((.(((((.&.))))).)))))))))))-)))	GAGCAAGGUGACGAAAAUAAAG&UUUUAUCUUCGUUACCUU-UUC	3	0.999999999281328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN22418_c0_g1_763_TPlot.pdf
TRINITY_DN22418_c0_g1:764	si_s803	TRINITY_DN22418_c0_g1	753	773	764	-26.00	-17.50	0.673076923076923	7.5	3-7,771-767;9-19,765-755	1-2,773-772[UP5];8-8,766-766[SIL];20-21,754-753[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	GCAAGGUGACGAAAAUAAAGA&AUUUUAUCUUCGUUACCUUUU	2	0.999999634998093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN22418_c0_g1_764_TPlot.pdf
TRINITY_DN22418_c0_g1:765	si_s802	TRINITY_DN22418_c0_g1	754	774	765	-26.40	-17.50	0.662878787878788	8.5	4-8,771-767;10-20,765-755	1-3,774-772[UP5];9-9,766-766[SIL];21-21,754-754[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CAAGGUGACGAAAAUAAAGAA&UAUUUUAUCUUCGUUACCUUU	3	0.999999999892823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN22418_c0_g1_765_TPlot.pdf
TRINITY_DN2241_c0_g1:1104	si_a795	TRINITY_DN2241_c0_g1	1093	1115	1104	-30.20	-19.98	0.66158940397351	13	3-6,1113-1110;9-17,1105-1097;19-21,1095-1093	1-2,1115-1114[UP5];7-8,1109-1106[AILt];18-18,1096-1096[SIL]	(((.(((((((((....((((..&..))))--..))))))))).)))	CUUGGGAUUGGAAUACUUGGACU&UUUCUA--UUUUCCAAUCCGAAG	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN2241_c0_g1_1104_TPlot.pdf
TRINITY_DN2241_c0_g1:1155	si_s76	TRINITY_DN2241_c0_g1	1144	1164	1155	-23.60	-16.30	0.690677966101695	11.5	4-18,1161-1147	1-3,1164-1162[UP5];19-21,1146-1144[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAAAGAGGAGGGAGAAAAUUU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2241_c0_g1_1155_TPlot.pdf
TRINITY_DN2241_c0_g1:1158	si_s84	TRINITY_DN2241_c0_g1	1147	1176	1158	-32.30	-23.60	0.730650154798762	21.5	1-9,1176-1168;10-20,1158-1148	x-x,1167-1159[BULt];21-21,1147-1147[UP3]	.(((((((((((.........(((((((((&)))))))))---------))))))))))).	AGAGGAGGGAGAAAAUUUCCCAAGGAGAGA&UCUUUCCUU---------UCUUCUUCUUCG	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2241_c0_g1_1158_TPlot.pdf
TRINITY_DN2241_c0_g1:1160	si_s71	TRINITY_DN2241_c0_g1	1149	1173	1160	-25.70	-17.00	0.66147859922179	14.5	1-5,1173-1169;6-6,1164-1164;9-21,1161-1149	x-x,1168-1165[BULt];7-8,1163-1162[SIL]	(((((((((((((..(....(((((&)))))----)..)))))))))))))	AGGAGGGAGAAAAUUUCCCAAGGAG&CUUCU----AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2241_c0_g1_1160_TPlot.pdf
TRINITY_DN2241_c0_g1:1169	si_s82	TRINITY_DN2241_c0_g1	1149	1178	1169	-28.90	-21.10	0.730103806228374	21.5	2-11,1177-1168;12-21,1158-1149	1-1,1178-1178[UP5];x-x,1167-1159[BULt]	((((((((((.........((((((((((.&.))))))))))---------))))))))))	AGGAGGGAGAAAAUUUCCCAAGGAGAGAAG&UUUCUUUCCUU---------UCUUCUUCUU	3	0.999999999997889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2241_c0_g1_1169_TPlot.pdf
TRINITY_DN2241_c0_g1:1172	si_s79	TRINITY_DN2241_c0_g1	1152	1181	1172	-26.20	-17.70	0.675572519083969	15	3-14,1179-1168;15-21,1158-1152	1-2,1181-1180[UP5];x-x,1167-1159[BULt]	(((((((.........((((((((((((..&..))))))))))))---------)))))))	AGGGAGAAAAUUUCCCAAGGAGAGAAGAUG&UUUUUUCUUUCCUU---------UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2241_c0_g1_1172_TPlot.pdf
TRINITY_DN2241_c0_g1:1727	si_s195	TRINITY_DN2241_c0_g1	1716	1736	1727	-30.50	-19.90	0.652459016393443	8	1-15,1736-1722	16-21,1721-1716[UP3]	......(((((((((((((((&)))))))))))))))......	AUCAUCCAUUCCAGAAUGAUC&GAUUAUUUUGGAAUGUACCAG	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s195_TRINITY_DN2241_c0_g1_1727_TPlot.pdf
TRINITY_DN2241_c0_g1:1728	si_s194	TRINITY_DN2241_c0_g1	1717	1737	1728	-30.30	-20.00	0.66006600660066	8	2-16,1736-1722	1-1,1737-1737[UP5];17-21,1721-1717[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCAUCCAUUCCAGAAUGAUCA&CGAUUAUUUUGGAAUGUACCA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN2241_c0_g1_1728_TPlot.pdf
TRINITY_DN2241_c0_g1:1729	si_s193	TRINITY_DN2241_c0_g1	1718	1738	1729	-30.40	-20.00	0.657894736842105	9	3-17,1736-1722	1-2,1738-1737[UP5];18-21,1721-1718[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAUCCAUUCCAGAAUGAUCAA&ACGAUUAUUUUGGAAUGUACC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN2241_c0_g1_1729_TPlot.pdf
TRINITY_DN2241_c0_g1:1730	si_s192	TRINITY_DN2241_c0_g1	1719	1739	1730	-28.00	-20.00	0.714285714285714	10	4-18,1736-1722	1-3,1739-1737[UP5];19-21,1721-1719[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUCCAUUCCAGAAUGAUCAAU&AACGAUUAUUUUGGAAUGUAC	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN2241_c0_g1_1730_TPlot.pdf
TRINITY_DN2241_c0_g1:1731	si_s191	TRINITY_DN2241_c0_g1	1720	1740	1731	-26.60	-20.00	0.75187969924812	11	5-19,1736-1722	1-4,1740-1737[UP5];20-21,1721-1720[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCCAUUCCAGAAUGAUCAAUU&UAACGAUUAUUUUGGAAUGUA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN2241_c0_g1_1731_TPlot.pdf
TRINITY_DN22422_c0_g1:1418	si_a409	TRINITY_DN22422_c0_g1	1407	1427	1418	-19.50	-13.10	0.671794871794872	9	1-5,1427-1423;7-16,1421-1412	6-6,1422-1422[SIL];17-21,1411-1407[UP3]	.....((((((((((.(((((&))))).)))))))))).....	CACUAUAAAUAUAGAGAAGAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999708257402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN22422_c0_g1_1418_TPlot.pdf
TRINITY_DN22422_c2_g1:643	si_a640	TRINITY_DN22422_c2_g1	632	652	643	-24.10	-16.40	0.680497925311203	7	1-14,652-639	15-21,638-632[UP3]	.......((((((((((((((&)))))))))))))).......	GCUAAUCUACUCAAAAAAAUC&GAUUUUUUUGAGUAAUAUAUC	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN22422_c2_g1_643_TPlot.pdf
TRINITY_DN22422_c2_g1:644	si_a639	TRINITY_DN22422_c2_g1	633	653	644	-23.60	-16.80	0.711864406779661	7	2-15,652-639	1-1,653-653[UP5];16-21,638-633[UP3]	......((((((((((((((.&.))))))))))))))......	CUAAUCUACUCAAAAAAAUCU&CGAUUUUUUUGAGUAAUAUAU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN22422_c2_g1_644_TPlot.pdf
TRINITY_DN22422_c2_g1:645	si_a638	TRINITY_DN22422_c2_g1	634	654	645	-24.40	-16.80	0.688524590163935	8	3-16,652-639	1-2,654-653[UP5];17-21,638-634[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAAUCUACUCAAAAAAAUCUA&UCGAUUUUUUUGAGUAAUAUA	2	0.991386537167641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN22422_c2_g1_645_TPlot.pdf
TRINITY_DN22422_c2_g1:646	si_a637	TRINITY_DN22422_c2_g1	635	655	646	-25.80	-16.80	0.651162790697674	9	4-17,652-639	1-3,655-653[UP5];18-21,638-635[UP3]	....((((((((((((((...&...))))))))))))))....	AAUCUACUCAAAAAAAUCUAG&GUCGAUUUUUUUGAGUAAUAU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN22422_c2_g1_646_TPlot.pdf
TRINITY_DN22422_c2_g1:647	si_a636	TRINITY_DN22422_c2_g1	636	658	647	-26.30	-17.50	0.665399239543726	8	1-4,658-655;5-18,652-639	x-x,654-653[BULt];19-21,638-636[UP3]	...((((((((((((((..((((&))))--))))))))))))))...	AUCUACUCAAAAAAAUCUAGAUA&UGUC--GAUUUUUUUGAGUAAUA	2	0.999992005192978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN22422_c2_g1_647_TPlot.pdf
TRINITY_DN22422_c2_g1:648	si_a635	TRINITY_DN22422_c2_g1	637	659	648	-26.10	-18.50	0.708812260536398	7	1-5,659-655;6-19,652-639	x-x,654-653[BULt];20-21,638-637[UP3]	..((((((((((((((..(((((&)))))--))))))))))))))..	UCUACUCAAAAAAAUCUAGAUAU&AUGUC--GAUUUUUUUGAGUAAU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN22422_c2_g1_648_TPlot.pdf
TRINITY_DN22422_c2_g1:649	si_a634	TRINITY_DN22422_c2_g1	638	660	649	-26.40	-18.50	0.700757575757576	7	2-6,659-655;7-20,652-639	1-1,660-660[UP5];x-x,654-653[BULt];21-21,638-638[UP3]	.((((((((((((((..(((((.&.)))))--)))))))))))))).	CUACUCAAAAAAAUCUAGAUAUC&UAUGUC--GAUUUUUUUGAGUAA	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN22422_c2_g1_649_TPlot.pdf
TRINITY_DN22422_c2_g1:650	si_a633	TRINITY_DN22422_c2_g1	639	661	650	-26.40	-18.20	0.689393939393939	8	3-7,659-655;8-21,652-639	1-2,661-660[UP5];x-x,654-653[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	UACUCAAAAAAAUCUAGAUAUCC&UUAUGUC--GAUUUUUUUGAGUA	2	0.999116901745928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN22422_c2_g1_650_TPlot.pdf
TRINITY_DN22424_c0_g2:248	si_s39	TRINITY_DN22424_c0_g2	238	257	248	-22.30	-16.30	0.730941704035874	8	4-12,254-246;14-21,245-238	1-3,257-255[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GAAUCCGA-UAUUAGAGAAAU&AAAUCUUUAAUAAUUGGAUUU	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN22424_c0_g2_248_TPlot.pdf
TRINITY_DN22424_c0_g2:319	si_a321	TRINITY_DN22424_c0_g2	308	328	319	-26.70	-17.80	0.666666666666667	8.5	3-10,326-319;12-16,317-313;18-21,311-308	1-2,328-327[UP5];11-11,318-318[SIL];17-17,312-312[SIL]	((((.(((((.((((((((..&..)))))))).))))).))))	GGAACGAAAGCAUCGUGGAAC&UAUCCAUGAUUUUUUUAUUCC	4	0.999907570240935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN22424_c0_g2_319_TPlot.pdf
TRINITY_DN22425_c0_g1:754	si_s366	TRINITY_DN22425_c0_g1	743	761	754	-39.70	-26.98	0.679596977329975	12	1-3,761-759;8-21,756-743	4-7,758-757[AILq]	((((((((((((((..--(((&)))....))))))))))))))	GCGCGGGCGGUUGGGC--GUC&GAUUGAACCGAUCGCUCGCGU	1	0.0137034102118545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s366_TRINITY_DN22425_c0_g1_754_TPlot.pdf
TRINITY_DN22445_c0_g1:1692	si_s74	TRINITY_DN22445_c0_g1	1681	1701	1692	-25.00	-16.60	0.664	10.5	4-14,1698-1688;16-21,1686-1681	1-3,1701-1699[UP5];15-15,1687-1687[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GGGAGGCGAGAAGGAAGAAGA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN22445_c0_g1_1692_TPlot.pdf
TRINITY_DN22445_c0_g1:841	si_a716	TRINITY_DN22445_c0_g1	829	850	841	-33.40	-22.70	0.679640718562874	7.5	1-2,850-849;5-15,846-836;16-19,834-831;21-21,829-829	3-4,848-847[SIL];x-x,835-835[BULt];20-20,830-830[SIL]	(.((((.(((((((((((..((&))..)))))))))))-)))).)	GGCCGACGUGACGAUUGUGAUG&CAAAAUAAUCGUUAC-UCGGGC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN22445_c0_g1_841_TPlot.pdf
TRINITY_DN22450_c0_g1:551	si_a349	TRINITY_DN22450_c0_g1	540	560	551	-21.30	-15.10	0.708920187793427	8.5	1-3,560-558;6-21,555-540	4-5,557-556[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	UAGAAUAGGGUUGGUAGAUUC&GAAAAUAUUAAUUCUAUUUUG	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN22450_c0_g1_551_TPlot.pdf
TRINITY_DN22459_c0_g2:268	si_a769	TRINITY_DN22459_c0_g2	257	275	268	-26.70	-18.60	0.696629213483146	7.5	2-7,274-269;10-21,268-257	1-1,275-275[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GAGAGUUGAGUU--UCAAAAU&UUUUUGAUUGAUUCAACUCUU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN22459_c0_g2_268_TPlot.pdf
TRINITY_DN22489_c0_g1:1847	si_a491	TRINITY_DN22489_c0_g1	1836	1856	1847	-29.90	-20.10	0.672240802675585	9	5-15,1852-1842;17-21,1840-1836	1-4,1856-1853[UP5];16-16,1841-1841[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GACGAUAAACGAUAUAUGGGC&UAGAAUAUGUCGUUUUUCGUC	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN22489_c0_g1_1847_TPlot.pdf
TRINITY_DN22519_c0_g2:831	si_a174	TRINITY_DN22519_c0_g2	820	840	831	-34.40	-22.40	0.651162790697674	9.5	1-15,840-826	16-21,825-820[UP3]	......(((((((((((((((&)))))))))))))))......	CGUCACUGUUUGGAUGGGUGA&UCACCCGUCUAGAUAAUAUCU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN22519_c0_g2_831_TPlot.pdf
TRINITY_DN22519_c0_g2:832	si_a173	TRINITY_DN22519_c0_g2	821	841	832	-33.80	-22.50	0.665680473372781	9	2-16,840-826	1-1,841-841[UP5];17-21,825-821[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GUCACUGUUUGGAUGGGUGAC&UUCACCCGUCUAGAUAAUAUC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN22519_c0_g2_832_TPlot.pdf
TRINITY_DN22519_c0_g2:833	si_a172	TRINITY_DN22519_c0_g2	822	842	833	-31.90	-22.50	0.705329153605016	10	3-17,840-826	1-2,842-841[UP5];18-21,825-822[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCACUGUUUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN22519_c0_g2_833_TPlot.pdf
TRINITY_DN22519_c0_g2:834	si_a171	TRINITY_DN22519_c0_g2	823	843	834	-32.10	-22.50	0.700934579439252	10.5	4-18,840-826	1-3,843-841[UP5];19-21,825-823[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACUGUUUGGAUGGGUGACCG&UAUUCACCCGUCUAGAUAAUA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN22519_c0_g2_834_TPlot.pdf
TRINITY_DN22519_c0_g2:835	si_a170	TRINITY_DN22519_c0_g2	824	844	835	-33.40	-22.50	0.673652694610778	11.5	5-19,840-826	1-4,844-841[UP5];20-21,825-824[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACUGUUUGGAUGGGUGACCGA&CUAUUCACCCGUCUAGAUAAU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN22519_c0_g2_835_TPlot.pdf
TRINITY_DN22519_c0_g2:836	si_a169	TRINITY_DN22519_c0_g2	825	853	836	-34.30	-23.30	0.67930029154519	19.5	1-5,853-849;6-20,840-826	x-x,848-841[BULt];21-21,825-825[UP3]	.(((((((((((((((........(((((&)))))--------))))))))))))))).	CUGUUUGGAUGGGUGACCGAGCUCAUAGA&UCUAU--------UCACCCGUCUAGAUAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a169_TRINITY_DN22519_c0_g2_836_TPlot.pdf
TRINITY_DN22519_c0_g2:837	si_a168	TRINITY_DN22519_c0_g2	826	854	837	-34.40	-23.00	0.668604651162791	19	2-6,853-849;7-21,840-826	1-1,854-854[UP5];x-x,848-841[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUUUGGAUGGGUGACCGAGCUCAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	0	0.0445062246494602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN22519_c0_g2_837_TPlot.pdf
TRINITY_DN2251_c0_g1:3135	si_s121	TRINITY_DN2251_c0_g1	3124	3144	3135	-27.00	-18.10	0.67037037037037	10.5	5-19,3140-3126	1-4,3144-3141[UP5];20-21,3125-3124[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCUCAAUUCUUCUGUUUCCAA&AGAAAAAUAGAAGAGUUGAAU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN2251_c0_g1_3135_TPlot.pdf
TRINITY_DN2253_c0_g1:4532	si_a854	TRINITY_DN2253_c0_g1	4521	4541	4532	-25.00	-16.30	0.652	8.5	1-6,4541-4536;9-18,4533-4524	7-8,4535-4534[SIL];19-21,4523-4521[UP3]	...((((((((((..((((((&))))))..))))))))))...	GGUUGAUUGGAUUAGAGGUUA&UAACUUGAAAUCCAAUUAUUA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN2253_c0_g1_4532_TPlot.pdf
TRINITY_DN2253_c0_g1:4644	si_s734	TRINITY_DN2253_c0_g1	4634	4653	4644	-35.50	-23.10	0.650704225352113	10	5-13,4649-4641;15-21,4640-4634	1-4,4653-4650[UP5];14-14,x-x[BULq]	(((((((-(((((((((....&....))))))))).)))))))	CGAUCUG-UCAUCCGUCAUCG&UCUAGACGGGUGAAUAGAUUG	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s734_TRINITY_DN2253_c0_g1_4644_TPlot.pdf
TRINITY_DN22540_c0_g1:61	si_a44	TRINITY_DN22540_c0_g1	49	69	61	-43.30	-28.20	0.651270207852194	7	2-8,68-62;10-12,61-59;13-21,57-49	1-1,69-69[UP5];9-9,x-x[BULq];x-x,58-58[BULt]	(((((((((.(((-(((((((.&.))))))).)))-)))))))))	GUCGACUCCAUAG-CUUAUCGA&CCGGUAGGUCUA-GGAGUCGAC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a44_TRINITY_DN22540_c0_g1_61_TPlot.pdf
TRINITY_DN22546_c0_g1:268	si_a545	TRINITY_DN22546_c0_g1	257	276	268	-28.10	-19.50	0.693950177935943	8	1-8,276-269;10-16,268-262	9-9,x-x[BULq];17-21,261-257[UP3]	.....(((((((-((((((((&)))))))).))))))).....	UGUCUGAAAUAG-UUGAGCCG&CGGUUCAAUCUAUUUCUUUAU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN22546_c0_g1_268_TPlot.pdf
TRINITY_DN2254_c0_g1:1983	si_a555	TRINITY_DN2254_c0_g1	1972	1990	1983	-33.70	-22.60	0.670623145400593	6	1-8,1990-1983;11-18,1982-1975;20-20,1973-1973	9-10,x-x[BULq];19-19,1974-1974[SIL];21-21,1972-1972[UP3]	.(.((((((((--((((((((&))))))))..)))))))).).	GCUCGGGGAGA--AAGAAAUA&UAUUUCUUUAUCUCCCCGUGA	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN2254_c0_g1_1983_TPlot.pdf
TRINITY_DN2254_c0_g1:1984	si_a552	TRINITY_DN2254_c0_g1	1975	1994	1984	-33.10	-22.40	0.676737160120846	6	2-4,1993-1991;5-11,1989-1983;14-21,1982-1975	1-1,1994-1994[UP5];x-x,1990-1990[BULt];12-13,x-x[BULq]	((((((((--(((((((.(((.&.)))-)))))))..))))))))	CGGGGAGA--AAGAAAUAAGAA&AUCU-AUUUCUUUAUCUCCCCG	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN2254_c0_g1_1984_TPlot.pdf
TRINITY_DN2254_c0_g1:1985	si_a551	TRINITY_DN2254_c0_g1	1976	1995	1985	-31.60	-20.60	0.651898734177215	7	3-5,1993-1991;6-12,1989-1983;15-21,1982-1976	1-2,1995-1994[UP5];x-x,1990-1990[BULt];13-14,x-x[BULq]	(((((((--(((((((.(((..&..)))-)))))))..)))))))	GGGGAGA--AAGAAAUAAGAAA&AAUCU-AUUUCUUUAUCUCCCC	2	0.999094643521448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN2254_c0_g1_1985_TPlot.pdf
TRINITY_DN2254_c0_g1:1987	si_s70	TRINITY_DN2254_c0_g1	1976	1996	1987	-25.80	-17.20	0.666666666666667	9	3-6,1994-1991;9-21,1988-1976	1-2,1996-1995[UP5];7-8,1990-1989[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	GGGGAGAAAGAAAUAAGAAAA&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2254_c0_g1_1987_TPlot.pdf
TRINITY_DN2254_c0_g1:2974	si_s436	TRINITY_DN2254_c0_g1	2963	2985	2974	-19.60	-14.40	0.73469387755102	8	2-7,2984-2979;8-20,2976-2964	1-1,2985-2985[UP5];x-x,2978-2977[BULt];21-21,2963-2963[UP3]	.(((((((((((((..((((((.&.))))))--))))))))))))).	AAUAUAUAAUAUGUUAAGUUGUG&AAUAAUU--ACAUAUUAUAUAUA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN2254_c0_g1_2974_TPlot.pdf
TRINITY_DN2255_c0_g1:1273	si_s413	TRINITY_DN2255_c0_g1	1262	1281	1273	-24.80	-16.30	0.657258064516129	6.5	1-5,1281-1277;7-18,1276-1265	6-6,x-x[BULq];19-21,1264-1262[UP3]	...((((((((((((-(((((&))))).))))))))))))...	AUAAUGGAAUGUGUC-UUUUU&AAAAACGACAUAUUCUAUAUA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN2255_c0_g1_1273_TPlot.pdf
TRINITY_DN2255_c0_g1:352	si_s801	TRINITY_DN2255_c0_g1	341	361	352	-28.20	-19.70	0.698581560283688	9	1-16,361-346	17-21,345-341[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAUCCGGCGGAGAUGAAAUGC&GUAUUUUAUCUUCGUUACCUU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN2255_c0_g1_352_TPlot.pdf
TRINITY_DN2255_c0_g1:353	si_s800	TRINITY_DN2255_c0_g1	342	362	353	-29.70	-20.10	0.676767676767677	8.5	2-17,361-346	1-1,362-362[UP5];18-21,345-342[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUCCGGCGGAGAUGAAAUGCU&CGUAUUUUAUCUUCGUUACCU	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN2255_c0_g1_353_TPlot.pdf
TRINITY_DN2255_c0_g1:354	si_s799	TRINITY_DN2255_c0_g1	343	363	354	-30.00	-20.10	0.67	9.5	3-18,361-346	1-2,363-362[UP5];19-21,345-343[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCCGGCGGAGAUGAAAUGCUU&UCGUAUUUUAUCUUCGUUACC	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN2255_c0_g1_354_TPlot.pdf
TRINITY_DN2255_c0_g1:356	si_s797	TRINITY_DN2255_c0_g1	345	366	356	-30.00	-20.30	0.676666666666667	9	1-3,366-364;5-20,361-346	4-4,363-362[AILt];21-21,345-345[UP3]	.((((((((((((((((..(((&)))-.)))))))))))))))).	CGGCGGAGAUGAAAUGCUUAGU&GCU-CGUAUUUUAUCUUCGUUA	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2255_c0_g1_356_TPlot.pdf
TRINITY_DN2255_c0_g1:357	si_s796	TRINITY_DN2255_c0_g1	346	367	357	-30.30	-20.70	0.683168316831683	8.5	1-4,367-364;6-21,361-346	5-5,363-362[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	GGCGGAGAUGAAAUGCUUAGUU&AGCU-CGUAUUUUAUCUUCGUU	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2255_c0_g1_357_TPlot.pdf
TRINITY_DN2255_c0_g1:513	si_s76	TRINITY_DN2255_c0_g1	502	523	513	-23.60	-15.82	0.670338983050847	13	1-5,523-519;9-21,514-502	6-8,518-515[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	AAGAAAGGAGGGGCUAUAGAGU&AUUUU-UUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2255_c0_g1_513_TPlot.pdf
TRINITY_DN22567_c0_g2:34	si_s559	TRINITY_DN22567_c0_g2	22	43	34	-27.80	-18.20	0.654676258992806	12	6-15,38-29;16-20,27-23	1-5,43-39[UP5];x-x,28-28[BULt];21-21,22-22[UP3]	.(((((.((((((((((.....&.....))))))))))-))))).	GUUGUCACCGAAAAUGUGGAGU&AAUUAAUAUUUUCGG-GACAAG	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN22567_c0_g2_34_TPlot.pdf
TRINITY_DN2256_c0_g1:1232	si_a24	TRINITY_DN2256_c0_g1	1221	1241	1232	-24.20	-16.20	0.669421487603306	10	1-16,1241-1226	17-21,1225-1221[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAGCAGGAGCUGAGAAUGGAU&AUUUAUUUUUAGUUCUAAGAC	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN2256_c0_g1_1232_TPlot.pdf
TRINITY_DN2256_c0_g1:1234	si_a22	TRINITY_DN2256_c0_g1	1223	1244	1234	-23.50	-16.50	0.702127659574468	10	1-3,1244-1242;4-18,1240-1226	x-x,1241-1241[BULt];19-21,1225-1223[UP3]	...(((((((((((((((.(((&)))-)))))))))))))))...	GCAGGAGCUGAGAAUGGAUUAG&CUA-UUUAUUUUUAGUUCUAAG	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN2256_c0_g1_1234_TPlot.pdf
TRINITY_DN2256_c0_g1:1236	si_a20	TRINITY_DN2256_c0_g1	1225	1245	1236	-26.70	-17.60	0.659176029962547	10	1-2,1245-1244;5-20,1241-1226	3-4,1243-1242[SIL];21-21,1225-1225[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	AGGAGCUGAGAAUGGAUUAGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999999946397659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2256_c0_g1_1236_TPlot.pdf
TRINITY_DN2256_c0_g1:1674	si_a783	TRINITY_DN2256_c0_g1	1663	1683	1674	-24.70	-16.80	0.680161943319838	8	4-14,1680-1670;16-21,1668-1663	1-3,1683-1681[UP5];15-15,1669-1669[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAAUAGCGAAAUAGGAGAAAG&AACUCUUCUAUUUUUCUAUUU	2	0.999999972584635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2256_c0_g1_1674_TPlot.pdf
TRINITY_DN2256_c0_g1:6120	si_s84	TRINITY_DN2256_c0_g1	6109	6129	6120	-32.30	-23.80	0.736842105263158	8.5	2-3,6128-6127;6-20,6124-6110	1-1,6129-6129[UP5];4-5,6126-6125[SIL];21-21,6109-6109[UP3]	.(((((((((((((((..((.&.))..))))))))))))))).	AGGAGAAGAGGAAAGGUUGGC&UCUUUCCUUUCUUCUUCUUCG	2	0.999060199882597	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2256_c0_g1_6120_TPlot.pdf
TRINITY_DN2256_c0_g1:6121	si_s83	TRINITY_DN2256_c0_g1	6110	6130	6121	-30.90	-23.40	0.757281553398058	9	3-4,6128-6127;7-21,6124-6110	1-2,6130-6129[UP5];5-6,6126-6125[SIL]	(((((((((((((((..((..&..))..)))))))))))))))	GGAGAAGAGGAAAGGUUGGCU&UUCUUUCCUUUCUUCUUCUUC	4	0.999992075111343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2256_c0_g1_6121_TPlot.pdf
TRINITY_DN2256_c0_g1:6122	si_s82	TRINITY_DN2256_c0_g1	6111	6131	6122	-28.90	-21.10	0.730103806228374	11	4-5,6128-6127;8-21,6124-6111	1-3,6131-6129[UP5];6-7,6126-6125[SIL]	((((((((((((((..((...&...))..))))))))))))))	GAGAAGAGGAAAGGUUGGCUG&UUUCUUUCCUUUCUUCUUCUU	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2256_c0_g1_6122_TPlot.pdf
TRINITY_DN2256_c0_g1:6376	si_s76	TRINITY_DN2256_c0_g1	6361	6385	6376	-23.60	-16.60	0.703389830508475	8.5	2-13,6384-6373;14-20,6368-6362	1-1,6385-6385[UP5];x-x,6372-6369[BULt];21-21,6361-6361[UP3]	.(((((((....((((((((((((.&.))))))))))))----))))))).	UGGAAAGGUCCAAGAGAAAAGAAAG&AUUUUUUUUCUUU----CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2256_c0_g1_6376_TPlot.pdf
TRINITY_DN2257_c0_g1:1260	si_s39	TRINITY_DN2257_c0_g1	1248	1269	1260	-22.30	-14.80	0.663677130044843	9	3-14,1267-1256;16-21,1253-1248	1-2,1269-1268[UP5];15-15,1255-1254[AILt]	((((((..((((((((((((..&..))))))))))))-.))))))	AAAUCUUCGUUGUUGAAGGUAU&AAAUCUUUAAUAAU-UGGAUUU	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN2257_c0_g1_1260_TPlot.pdf
TRINITY_DN2257_c0_g1:956	si_s490	TRINITY_DN2257_c0_g1	945	965	956	-17.80	-12.20	0.685393258426966	6	1-16,965-950	17-21,949-945[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGCGUUUUAUAUUUAAAUAGA&UUUAUUUAAAUAUAAACAAAA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN2257_c0_g1_956_TPlot.pdf
TRINITY_DN22580_c0_g6:187	si_a681	TRINITY_DN22580_c0_g6	176	196	187	-33.80	-22.80	0.674556213017752	5.5	1-13,196-184;15-18,182-179	14-14,183-183[SIL];19-21,178-176[UP3]	...((((.(((((((((((((&))))))))))))).))))...	ACGUUGAUACCGUGUGAAUAA&UUAUUCACGCGGUUUCGAACA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN22580_c0_g6_187_TPlot.pdf
TRINITY_DN22587_c0_g1:4923	si_a626	TRINITY_DN22587_c0_g1	4912	4931	4923	-30.20	-21.30	0.705298013245033	5.5	1-8,4931-4924;10-20,4923-4913	9-9,x-x[BULq];21-21,4912-4912[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	UAAAGUCGAUAU-AUACGUCU&AGGCGUAUUAUGUCGAUUUUU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN22587_c0_g1_4923_TPlot.pdf
TRINITY_DN22587_c6_g1:19	si_a472	TRINITY_DN22587_c6_g1	8	28	19	-21.50	-17.00	0.790697674418605	5	3-8,26-21;10-21,19-8	1-2,28-27[UP5];9-9,20-20[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UAUAUAACAAUAUUUACAUUG&AUAUGUAAUUAUUGUUAUAUA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN22587_c6_g1_19_TPlot.pdf
TRINITY_DN22587_c6_g1:20	si_a471	TRINITY_DN22587_c6_g1	9	29	20	-21.10	-15.60	0.739336492890995	7	4-9,26-21;11-21,19-9	1-3,29-27[UP5];10-10,20-20[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AUAUAACAAUAUUUACAUUGA&AAUAUGUAAUUAUUGUUAUAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN22587_c6_g1_20_TPlot.pdf
TRINITY_DN2258_c0_g2:251	si_s93	TRINITY_DN2258_c0_g2	239	261	251	-34.80	-22.70	0.652298850574713	9.5	1-7,261-255;8-8,253-253;11-13,250-248;14-21,246-239	x-x,254-254[BULt];9-10,252-251[SIL];x-x,247-247[BULt]	((((((((.(((..(.(((((((&)))))))-)..)))-))))))))	AAUCCGGAUGCGUUGCAGGAGGA&UCUUCUU-CUUCGC-UUCGGAUU	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2258_c0_g2_251_TPlot.pdf
TRINITY_DN2258_c0_g2:713	si_s479	TRINITY_DN2258_c0_g2	702	723	713	-26.40	-17.20	0.651515151515151	9.5	1-6,723-718;7-17,716-706	x-x,717-717[BULt];18-21,705-702[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UAUUAGUAAAUGUGGAGAUCUG&CGGAUC-CUAUAUUUAUUUAAA	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN2258_c0_g2_713_TPlot.pdf
TRINITY_DN2258_c0_g2:715	si_s477	TRINITY_DN2258_c0_g2	704	725	715	-27.10	-19.20	0.708487084870849	8.5	2-8,724-718;9-19,716-706	1-1,725-725[UP5];x-x,717-717[BULt];20-21,705-704[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	UUAGUAAAUGUGGAGAUCUGUA&AACGGAUC-CUAUAUUUAUUUA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN2258_c0_g2_715_TPlot.pdf
TRINITY_DN2258_c0_g2:716	si_s476	TRINITY_DN2258_c0_g2	705	726	716	-28.40	-19.20	0.676056338028169	9	3-9,724-718;10-20,716-706	1-2,726-725[UP5];x-x,717-717[BULt];21-21,705-705[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	UAGUAAAUGUGGAGAUCUGUAA&CAACGGAUC-CUAUAUUUAUUU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN2258_c0_g2_716_TPlot.pdf
TRINITY_DN22593_c0_g2:1330	si_a794	TRINITY_DN22593_c0_g2	1318	1338	1330	-28.60	-19.30	0.674825174825175	5.5	1-6,1338-1333;8-16,1332-1324;17-20,1322-1319	7-7,x-x[BULq];x-x,1323-1323[BULt];21-21,1318-1318[UP3]	.((((.(((((((((-((((((&)))))).)))))))))-)))).	CUCGGAAUUGGAAAA-AGAAGG&UUUUCUAUUUUCCAAU-CCGAA	4	0.999693963058563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN22593_c0_g2_1330_TPlot.pdf
TRINITY_DN2259_c0_g1:1463	si_s79	TRINITY_DN2259_c0_g1	1452	1472	1463	-26.20	-19.00	0.725190839694656	12	5-7,1468-1466;10-21,1463-1452	1-4,1472-1469[UP5];8-9,1465-1464[SIL]	((((((((((((..(((....&....)))..))))))))))))	GAGAAGAAGGGAUCGAACAUU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2259_c0_g1_1463_TPlot.pdf
TRINITY_DN2259_c0_g1:1948	si_a637	TRINITY_DN2259_c0_g1	1937	1960	1948	-25.80	-17.08	0.662015503875969	18	1-7,1960-1954;12-21,1946-1937	8-11,1953-1947[AILt]	((((((((((.......(((((((&)))))))---....))))))))))	GUGUUACUCGCUGCGGCGAUCGGC&GUCGAUU---UUUUUGAGUAAUAU	4	0.999999999744379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2259_c0_g1_1948_TPlot.pdf
TRINITY_DN2259_c0_g1:2195	si_s202	TRINITY_DN2259_c0_g1	2185	2203	2195	-33.60	-23.00	0.68452380952381	8.5	3-6,2201-2198;8-17,2197-2188;19-21,2187-2185	1-2,2203-2202[UP5];7-7,x-x[BULq];18-18,x-x[BULq]	(((-((((((((((-((((..&..)))).)))))))))).)))	GGC-CGACUGGUGC-UUCCGU&UUGGAAUGUACCAGUUGUGUU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN2259_c0_g1_2195_TPlot.pdf
TRINITY_DN2259_c0_g1:3615	si_a149	TRINITY_DN2259_c0_g1	3606	3624	3615	-29.40	-20.70	0.704081632653061	9	1-12,3624-3613;15-18,3612-3609	13-14,x-x[BULq];19-21,3608-3606[UP3]	...((((--((((((((((((&))))))))))))..))))...	ACAGACC--GAGACGACGACG&CGUUGUUGUUUUAAGGUCAAU	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN2259_c0_g1_3615_TPlot.pdf
TRINITY_DN2259_c0_g1:3616	si_a148	TRINITY_DN2259_c0_g1	3607	3625	3616	-30.30	-22.30	0.735973597359736	7.5	1-13,3625-3613;16-19,3612-3609	14-15,x-x[BULq];20-21,3608-3607[UP3]	..((((--(((((((((((((&)))))))))))))..))))..	CAGACC--GAGACGACGACGA&UCGUUGUUGUUUUAAGGUCAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN2259_c0_g1_3616_TPlot.pdf
TRINITY_DN2259_c0_g1:3617	si_a147	TRINITY_DN2259_c0_g1	3608	3626	3617	-30.40	-22.30	0.733552631578947	7.5	2-14,3625-3613;17-20,3612-3609	1-1,3626-3626[UP5];15-16,x-x[BULq];21-21,3608-3608[UP3]	.((((--(((((((((((((.&.)))))))))))))..)))).	AGACC--GAGACGACGACGAG&AUCGUUGUUGUUUUAAGGUCA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN2259_c0_g1_3617_TPlot.pdf
TRINITY_DN2259_c0_g1:3618	si_a146	TRINITY_DN2259_c0_g1	3609	3627	3618	-29.70	-21.80	0.734006734006734	8	3-15,3625-3613;18-21,3612-3609	1-2,3627-3626[UP5];16-17,x-x[BULq]	((((--(((((((((((((..&..)))))))))))))..))))	GACC--GAGACGACGACGAGC&AAUCGUUGUUGUUUUAAGGUC	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN2259_c0_g1_3618_TPlot.pdf
TRINITY_DN2259_c0_g1:3619	si_a145	TRINITY_DN2259_c0_g1	3610	3628	3619	-28.10	-18.60	0.661921708185053	10	4-16,3625-3613;19-21,3612-3610	1-3,3628-3626[UP5];17-18,x-x[BULq]	(((--(((((((((((((...&...)))))))))))))..)))	ACC--GAGACGACGACGAGCU&UAAUCGUUGUUGUUUUAAGGU	2	0.998961807600778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN2259_c0_g1_3619_TPlot.pdf
TRINITY_DN2259_c0_g1:3621	si_a143	TRINITY_DN2259_c0_g1	3610	3630	3621	-25.10	-16.50	0.657370517928287	14.5	6-18,3625-3613	1-5,3630-3626[UP5];19-21,3612-3610[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCGAGACGACGACGAGCUCU&AUUAAUCGUUGUUGUUUUAAG	3	0.999999938237291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN2259_c0_g1_3621_TPlot.pdf
TRINITY_DN2259_c0_g1:3622	si_a142	TRINITY_DN2259_c0_g1	3611	3631	3622	-23.50	-16.50	0.702127659574468	15.5	7-19,3625-3613	1-6,3631-3626[UP5];20-21,3612-3611[UP3]	..(((((((((((((......&......)))))))))))))..	CCGAGACGACGACGAGCUCUU&AAUUAAUCGUUGUUGUUUUAA	2	0.999799192897878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2259_c0_g1_3622_TPlot.pdf
TRINITY_DN2259_c0_g1:3623	si_a141	TRINITY_DN2259_c0_g1	3612	3632	3623	-23.80	-16.50	0.69327731092437	16.5	8-20,3625-3613	1-7,3632-3626[UP5];21-21,3612-3612[UP3]	.(((((((((((((.......&.......))))))))))))).	CGAGACGACGACGAGCUCUUC&UAAUUAAUCGUUGUUGUUUUA	3	0.999997333137613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2259_c0_g1_3623_TPlot.pdf
TRINITY_DN2259_c0_g1:3624	si_a140	TRINITY_DN2259_c0_g1	3613	3635	3624	-25.20	-16.50	0.654761904761905	19	1-2,3635-3634;9-21,3625-3613	3-8,3633-3626[AILt]	(((((((((((((........((&))--......)))))))))))))	GAGACGACGACGAGCUCUUCGGC&GU--AAUUAAUCGUUGUUGUUUU	3	0.999999990973786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN2259_c0_g1_3624_TPlot.pdf
TRINITY_DN2259_c0_g1:3636	si_s629	TRINITY_DN2259_c0_g1	3623	3645	3636	-34.60	-22.90	0.661849710982659	8.5	1-12,3645-3634;13-15,3631-3629;17-21,3627-3623	x-x,3633-3632[BULt];16-16,3628-3628[SIL]	(((((.(((..((((((((((((&))))))))))))--))).)))))	CGAGCUCUUCGGCGAAAGGAUCG&CGAUCUUUUCGU--AGGCGUUUG	2	0.994287804141701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN2259_c0_g1_3636_TPlot.pdf
TRINITY_DN2259_c0_g1:3822	si_s813	TRINITY_DN2259_c0_g1	3811	3831	3822	-27.10	-18.00	0.664206642066421	10	1-12,3831-3820	13-21,3819-3811[UP3]	.........((((((((((((&)))))))))))).........	GAAACGAUCGAAGAGGUAACG&CGUUACCUUUUCUUAAUAAUG	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN2259_c0_g1_3822_TPlot.pdf
TRINITY_DN2259_c0_g1:3823	si_s812	TRINITY_DN2259_c0_g1	3812	3832	3823	-26.40	-19.40	0.734848484848485	9	1-13,3832-3820	14-21,3819-3812[UP3]	........(((((((((((((&)))))))))))))........	AAACGAUCGAAGAGGUAACGA&UCGUUACCUUUUCUUAAUAAU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN2259_c0_g1_3823_TPlot.pdf
TRINITY_DN2259_c0_g1:3826	si_s809	TRINITY_DN2259_c0_g1	3815	3836	3826	-28.50	-20.70	0.726315789473684	8.5	1-3,3836-3834;4-16,3832-3820	x-x,3833-3833[BULt];17-21,3819-3815[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	CGAUCGAAGAGGUAACGAUGGA&UCU-UCGUUACCUUUUCUUAAU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN2259_c0_g1_3826_TPlot.pdf
TRINITY_DN2259_c0_g1:3827	si_s808	TRINITY_DN2259_c0_g1	3816	3837	3827	-28.60	-20.70	0.723776223776224	8.5	2-4,3836-3834;5-17,3832-3820	1-1,3837-3837[UP5];x-x,3833-3833[BULt];18-21,3819-3816[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	GAUCGAAGAGGUAACGAUGGAC&AUCU-UCGUUACCUUUUCUUAA	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2259_c0_g1_3827_TPlot.pdf
TRINITY_DN2259_c0_g1:3828	si_s807	TRINITY_DN2259_c0_g1	3817	3838	3828	-28.90	-20.70	0.716262975778547	9.5	3-5,3836-3834;6-18,3832-3820	1-2,3838-3837[UP5];x-x,3833-3833[BULt];19-21,3819-3817[UP3]	...(((((((((((((.(((..&..)))-)))))))))))))...	AUCGAAGAGGUAACGAUGGACA&UAUCU-UCGUUACCUUUUCUUA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2259_c0_g1_3828_TPlot.pdf
TRINITY_DN2259_c0_g1:3830	si_s805	TRINITY_DN2259_c0_g1	3819	3840	3830	-28.60	-20.70	0.723776223776224	11.5	5-7,3836-3834;8-20,3832-3820	1-4,3840-3837[UP5];x-x,3833-3833[BULt];21-21,3819-3819[UP3]	.(((((((((((((.(((....&....)))-))))))))))))).	CGAAGAGGUAACGAUGGACAUG&UUUAUCU-UCGUUACCUUUUCU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN2259_c0_g1_3830_TPlot.pdf
TRINITY_DN2259_c0_g1:3832	si_s803	TRINITY_DN2259_c0_g1	3821	3842	3832	-26.00	-17.10	0.657692307692308	14.5	7-9,3836-3834;10-21,3832-3821	1-6,3842-3837[UP5];x-x,3833-3833[BULt]	((((((((((((.(((......&......)))-))))))))))))	AAGAGGUAACGAUGGACAUGUU&AUUUUAUCU-UCGUUACCUUUU	3	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2259_c0_g1_3832_TPlot.pdf
TRINITY_DN2259_c0_g1:4008	si_a587	TRINITY_DN2259_c0_g1	3997	4017	4008	-30.80	-20.10	0.652597402597403	7.5	1-16,4017-4002	17-21,4001-3997[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUAGCUUGUUUUUCUUGUUAC&GUAACAAGAAGGACAGAAUUU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a587_TRINITY_DN2259_c0_g1_4008_TPlot.pdf
TRINITY_DN2259_c0_g1:4014	si_a581	TRINITY_DN2259_c0_g1	4003	4023	4014	-31.30	-20.60	0.65814696485623	7	1-3,4023-4021;6-21,4018-4003	4-5,4020-4019[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	UGUUUUUCUUGUUACGUUCGU&AUGUUUGUAACAAGAAGGACA	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a581_TRINITY_DN2259_c0_g1_4014_TPlot.pdf
TRINITY_DN225_c0_g1:1281	si_a391	TRINITY_DN225_c0_g1	1266	1290	1281	-22.80	-15.48	0.678947368421053	11.5	2-12,1289-1279;14-21,1273-1266	1-1,1290-1290[UP5];13-13,1278-1274[AILt]	((((((((.....(((((((((((.&.)))))))))))----.))))))))	AGCAAUUCAAGCAGUAUUCUUAAUG&AAUUAAGAAUAU----AGAAUUGUU	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN225_c0_g1_1281_TPlot.pdf
TRINITY_DN22605_c0_g2:1028	si_a784	TRINITY_DN22605_c0_g2	1017	1037	1028	-24.70	-16.50	0.668016194331984	11	5-21,1033-1017	1-4,1037-1034[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAAUAGAAGAAUGGGAUGCC&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN22605_c0_g2_1028_TPlot.pdf
TRINITY_DN22605_c0_g2:871	si_a73	TRINITY_DN22605_c0_g2	860	880	871	-21.90	-15.40	0.703196347031964	11.5	1-15,880-866	16-21,865-860[UP3]	......(((((((((((((((&)))))))))))))))......	UUCUCGGGAGAGCGGUUUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN22605_c0_g2_871_TPlot.pdf
TRINITY_DN2260_c0_g1:1225	si_a350	TRINITY_DN2260_c0_g1	1214	1234	1225	-20.30	-13.20	0.650246305418719	15.5	9-21,1226-1214	1-8,1234-1227[UP5]	(((((((((((((........&........)))))))))))))	UCAAGAUAGAAUUUCUGAGUU&AAAAUAUUAAUUCUAUUUUGA	2	0.999897460025328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN2260_c0_g1_1225_TPlot.pdf
TRINITY_DN2260_c0_g1:5708	si_a230	TRINITY_DN2260_c0_g1	5697	5717	5708	-26.90	-17.90	0.66542750929368	5	1-13,5717-5705;15-19,5703-5699	14-14,5704-5704[SIL];20-21,5698-5697[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AAGAAUUCAUUAUGGAGACAU&AUGUUUCUAUAAUCAAUUCGA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN2260_c0_g1_5708_TPlot.pdf
TRINITY_DN2261_c0_g1:1286	si_s196	TRINITY_DN2261_c0_g1	1275	1295	1286	-29.30	-21.80	0.744027303754266	11.5	6-11,1290-1285;13-21,1283-1275	1-5,1295-1291[UP5];12-12,1284-1284[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GCUGGUACAAUCCAAACAAAC&AUUAUUUUGGAAUGUACCAGU	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN2261_c0_g1_1286_TPlot.pdf
TRINITY_DN2261_c0_g1:1379	si_s86	TRINITY_DN2261_c0_g1	1353	1388	1379	-32.90	-21.90	0.665653495440729	19	2-14,1387-1375;15-21,1359-1353	1-1,1388-1388[UP5];x-x,1374-1360[BULt]	(((((((...............(((((((((((((.&.)))))))))))))---------------)))))))	GGCGAAGUUUAACAAGAAAUUAGAGAAGGAAGGAGU&UUUCCUUUCUUCUU---------------CUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2261_c0_g1_1379_TPlot.pdf
TRINITY_DN22623_c0_g1:1314	si_s86	TRINITY_DN22623_c0_g1	1303	1330	1314	-32.90	-21.60	0.656534954407295	18.5	2-7,1329-1324;8-9,1316-1315;11-21,1313-1303	1-1,1330-1330[UP5];x-x,1323-1317[BULt];10-10,1314-1314[SIL]	(((((((((((.((.......((((((.&.))))))-------)).)))))))))))	AGUGAAGAAGAUGAACUUGAAGAGGAAG&UUUCCUU-------UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN22623_c0_g1_1314_TPlot.pdf
TRINITY_DN22623_c0_g1:1332	si_a500	TRINITY_DN22623_c0_g1	1321	1340	1332	-34.40	-22.80	0.662790697674419	8.5	1-5,1340-1336;8-18,1334-1324	6-7,1335-1335[AILq];19-21,1323-1321[UP3]	...(((((((((((.-(((((&)))))..)))))))))))...	GAAGAGGAAGACGAU-GACGA&UCGUUUUUCGUCUUCCUUGGA	4	0.999999998067349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN22623_c0_g1_1332_TPlot.pdf
TRINITY_DN22623_c0_g1:1333	si_a499	TRINITY_DN22623_c0_g1	1322	1341	1333	-35.20	-24.10	0.684659090909091	8	1-6,1341-1336;9-19,1334-1324	7-8,1335-1335[AILq];20-21,1323-1322[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	AAGAGGAAGACGAU-GACGAU&GUCGUUUUUCGUCUUCCUUGG	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN22623_c0_g1_1333_TPlot.pdf
TRINITY_DN22623_c0_g1:1334	si_a498	TRINITY_DN22623_c0_g1	1323	1342	1334	-33.50	-24.40	0.728358208955224	8.5	2-7,1341-1336;10-20,1334-1324	1-1,1342-1342[UP5];8-9,1335-1335[AILq];21-21,1323-1323[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	AGAGGAAGACGAU-GACGAUG&UGUCGUUUUUCGUCUUCCUUG	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN22623_c0_g1_1334_TPlot.pdf
TRINITY_DN22627_c0_g2:126	si_a836	TRINITY_DN22627_c0_g2	115	135	126	-24.10	-18.10	0.75103734439834	5.5	2-15,134-121;17-20,119-116	1-1,135-135[UP5];16-16,120-120[SIL];21-21,115-115[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	CUGGUUGCUUCUGUUUUUUUC&AAAAAAAAUAGAAGUUGCUAA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN22627_c0_g2_126_TPlot.pdf
TRINITY_DN22638_c0_g1:1732	si_a22	TRINITY_DN22638_c0_g1	1721	1741	1732	-23.50	-15.50	0.659574468085106	10.5	4-18,1738-1724	1-3,1741-1739[UP5];19-21,1723-1721[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACCAGAGCUAAAGAUAGAACC&CUAUUUAUUUUUAGUUCUAAG	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN22638_c0_g1_1732_TPlot.pdf
TRINITY_DN2263_c0_g1:1006	si_s245	TRINITY_DN2263_c0_g1	992	1015	1006	-33.20	-21.90	0.659638554216867	10.5	1-10,1015-1006;12-15,1002-999;18-21,995-992	11-11,1005-1003[AILt];16-17,998-996[AILt]	((((...((((...((((((((((&))))))))))--.))))-..))))	UAUGGAAGGGACCCGUGCCUAUUG&CAAUAGGCAU--UUCCC-GAUAUA	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN2263_c0_g1_1006_TPlot.pdf
TRINITY_DN2263_c0_g1:1290	si_a113	TRINITY_DN2263_c0_g1	1279	1299	1290	-26.20	-17.10	0.652671755725191	17.5	8-20,1292-1280	1-7,1299-1293[UP5];21-21,1279-1279[UP3]	.(((((((((((((.......&.......))))))))))))).	AGUGGAGCGGGCUCAAUGGAU&AAAAUACGAGCUUGUUUUAUA	3	0.999999774367657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN2263_c0_g1_1290_TPlot.pdf
TRINITY_DN2263_c0_g1:1462	si_a353	TRINITY_DN2263_c0_g1	1451	1472	1462	-24.00	-15.90	0.6625	8	2-6,1471-1467;8-16,1464-1456;18-21,1454-1451	1-1,1472-1472[UP5];7-7,1466-1465[AILt];17-17,1455-1455[SIL]	((((.(((((((((..(((((.&.)))))-.))))))))).))))	CGGUGGAAAUGGAAGCUAAUAA&AUAUUA-AUUCUAUUUUGAUCG	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN2263_c0_g1_1462_TPlot.pdf
TRINITY_DN22650_c0_g1:725	si_s76	TRINITY_DN22650_c0_g1	715	734	725	-23.60	-15.50	0.656779661016949	9	5-12,730-723;14-20,722-716	1-4,734-731[UP5];13-13,x-x[BULq];21-21,715-715[UP3]	.(((((((-((((((((....&....)))))))).))))))).	UAGAAAGG-AAGAAAAAUACA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN22650_c0_g1_725_TPlot.pdf
TRINITY_DN22659_c0_g2:1202	si_s73	TRINITY_DN22659_c0_g2	1189	1211	1202	-24.00	-17.40	0.725	7.5	1-11,1211-1201;12-14,1198-1196;16-21,1194-1189	x-x,1200-1199[BULt];15-15,1195-1195[SIL]	((((((.(((..(((((((((((&)))))))))))--))).))))))	AGAGGACAGAUAGAAAAAGUAGA&UCUAUUUUUUU--UCUUUCCUUU	3	0.999999999999828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN22659_c0_g2_1202_TPlot.pdf
TRINITY_DN22659_c0_g2:1554	si_s63	TRINITY_DN22659_c0_g2	1543	1563	1554	-25.80	-18.30	0.709302325581395	9.5	1-13,1563-1551	14-21,1550-1543[UP3]	........(((((((((((((&)))))))))))))........	UGUGCGGAAGAAGUUGCUGAU&GUUAGCAACUUCUAUUUUUUU	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN22659_c0_g2_1554_TPlot.pdf
TRINITY_DN22659_c0_g2:1555	si_s62	TRINITY_DN22659_c0_g2	1544	1564	1555	-26.50	-18.90	0.713207547169811	9	1-14,1564-1551	15-21,1550-1544[UP3]	.......((((((((((((((&)))))))))))))).......	GUGCGGAAGAAGUUGCUGAUU&AGUUAGCAACUUCUAUUUUUU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN22659_c0_g2_1555_TPlot.pdf
TRINITY_DN22659_c0_g2:1561	si_s56	TRINITY_DN22659_c0_g2	1550	1570	1561	-29.20	-22.60	0.773972602739726	10	5-20,1566-1551	1-4,1570-1567[UP5];21-21,1550-1550[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGAAGUUGCUGAUUUGUUGA&AUUUCAAGUUAGCAACUUCUA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN22659_c0_g2_1561_TPlot.pdf
TRINITY_DN22659_c0_g2:1562	si_s55	TRINITY_DN22659_c0_g2	1551	1573	1562	-30.80	-22.30	0.724025974025974	8	2-5,1572-1569;6-21,1566-1551	1-1,1573-1573[UP5];x-x,1568-1567[BULt]	((((((((((((((((..((((.&.))))--))))))))))))))))	AGAAGUUGCUGAUUUGUUGAAUG&GAUUU--CAAGUUAGCAACUUCU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN22659_c0_g2_1562_TPlot.pdf
TRINITY_DN22663_c0_g1:1166	si_s551	TRINITY_DN22663_c0_g1	1155	1175	1166	-21.30	-14.50	0.68075117370892	13.5	8-21,1168-1155	1-7,1175-1169[UP5]	((((((((((((((.......&.......))))))))))))))	GAAAGUAUUAAUUCAAAAUAC&CAAAAUAGAAUUAAUAUUUUC	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN22663_c0_g1_1166_TPlot.pdf
TRINITY_DN22676_c1_g1:505	si_a228	TRINITY_DN22676_c1_g1	488	514	505	-27.10	-18.80	0.693726937269373	15	2-12,513-503;13-21,496-488	1-1,514-514[UP5];x-x,502-497[BULt]	(((((((((......(((((((((((.&.)))))))))))------)))))))))	GAAUUGAUUUCAUCGAUGGAAAUAUGG&UCAUGUUUCUAU------AAUCAAUUC	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN22676_c1_g1_505_TPlot.pdf
TRINITY_DN2267_c0_g1:165	si_s167	TRINITY_DN2267_c0_g1	152	179	165	-44.60	-31.10	0.697309417040359	16	2-4,178-176;5-12,170-163;14-21,159-152	1-1,179-179[UP5];x-x,175-171[BULt];13-13,162-160[AILt]	((((((((...((((((((.....(((.&.)))-----))))))))--.))))))))	GGGCAUCUGCCUACCCCUGAAUAUGCCC&UGGC-----CAGGGGUA--AAGAUGCCC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s167_TRINITY_DN2267_c0_g1_165_TPlot.pdf
TRINITY_DN2267_c0_g1:3296	si_a545	TRINITY_DN2267_c0_g1	3285	3304	3296	-28.10	-20.50	0.729537366548043	6.5	2-7,3303-3298;9-21,3297-3285	1-1,3304-3304[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GUGAAGAAGUGGA-UGAACUU&CGGUUCAAUCUAUUUCUUUAU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN2267_c0_g1_3296_TPlot.pdf
TRINITY_DN2267_c0_g2:445	si_s77	TRINITY_DN2267_c0_g2	433	454	445	-25.50	-17.40	0.68235294117647	8.5	1-11,454-444;12-19,442-435	x-x,443-443[BULt];20-21,434-433[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	CUAGAAAGGAGGAGGAAAAGGG&UUUUUUUUCUU-UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2267_c0_g2_445_TPlot.pdf
TRINITY_DN2267_c0_g2:447	si_s75	TRINITY_DN2267_c0_g2	435	456	447	-24.00	-17.40	0.725	8.5	3-13,454-444;14-21,442-435	1-2,456-455[UP5];x-x,443-443[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AGAAAGGAGGAGGAAAAGGGGA&UAUUUUUUUUCUU-UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2267_c0_g2_447_TPlot.pdf
TRINITY_DN2267_c1_g1:1865	si_a319	TRINITY_DN2267_c1_g1	1854	1877	1865	-22.40	-14.70	0.65625	10.5	1-8,1877-1870;9-13,1866-1862;15-21,1860-1854	x-x,1869-1867[BULt];14-14,1861-1861[SIL]	(((((((.(((((...((((((((&))))))))---))))).)))))))	GGUAAAAUGAUCGUCUUGGAUGAA&UUUAUCCA---UGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2267_c1_g1_1865_TPlot.pdf
TRINITY_DN2267_c1_g1:2022	si_s79	TRINITY_DN2267_c1_g1	2011	2031	2022	-26.20	-24.10	0.919847328244275	7	3-20,2029-2012	1-2,2031-2030[UP5];21-21,2011-2011[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UGGAAGAGAGGAAGGAAAGCA&UUUUUUCUUUCCUUUCUUCUU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2267_c1_g1_2022_TPlot.pdf
TRINITY_DN2267_c1_g1:2026	si_s75	TRINITY_DN2267_c1_g1	2015	2035	2026	-24.00	-18.90	0.7875	13.5	7-21,2029-2015	1-6,2035-2030[UP5]	(((((((((((((((......&......)))))))))))))))	AGAGAGGAAGGAAAGCAUCGA&UAUUUUUUUUCUUUCCUUUCU	2	0.99870110772865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2267_c1_g1_2026_TPlot.pdf
TRINITY_DN2267_c1_g1:2027	si_s74	TRINITY_DN2267_c1_g1	2016	2038	2027	-25.00	-19.88	0.7952	11	1-5,2038-2034;8-21,2029-2016	6-7,2033-2030[AILt]	((((((((((((((....(((((&)))))--..))))))))))))))	GAGAGGAAGGAAAGCAUCGAUAG&CUAUU--UUUUUUCUUUCCUUUC	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2267_c1_g1_2027_TPlot.pdf
TRINITY_DN2267_c1_g1:2139	si_a804	TRINITY_DN2267_c1_g1	2128	2148	2139	-37.20	-24.36	0.654838709677419	8.5	1-8,2148-2141;13-21,2136-2128	9-12,2140-2137[SIL]	(((((((((....((((((((&))))))))....)))))))))	UUUUCUUCGACAGGGAUUGGA&UCCAAUCCGAAGCGAAGAAGA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN2267_c1_g1_2139_TPlot.pdf
TRINITY_DN2267_c1_g1:264	si_a784	TRINITY_DN2267_c1_g1	252	273	264	-24.70	-16.60	0.672064777327935	8.5	2-10,272-264;12-18,261-255	1-1,273-273[UP5];11-11,263-262[AILt];19-21,254-252[UP3]	...(((((((..(((((((((.&.)))))))))-.)))))))...	GACAUAGAGACCAUAGAAGAGA&ACUCUUCUAU-UUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2267_c1_g1_264_TPlot.pdf
TRINITY_DN2267_c1_g1:2943	si_a406	TRINITY_DN2267_c1_g1	2932	2952	2943	-19.80	-13.90	0.702020202020202	3	2-13,2951-2940;15-21,2938-2932	1-1,2952-2952[UP5];14-14,2939-2939[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UUUAAAUCUAAAUAAAACAAG&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999961732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2267_c1_g1_2943_TPlot.pdf
TRINITY_DN2267_c1_g1:338	si_a779	TRINITY_DN2267_c1_g1	327	347	338	-27.00	-17.70	0.655555555555556	4.5	1-11,347-337;13-19,335-329	12-12,336-336[SIL];20-21,328-327[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AAAGAAAUAAAAGAGUUGAAU&AUUCAACUCUUCUAUUUUUCU	2	0.999952601456911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN2267_c1_g1_338_TPlot.pdf
TRINITY_DN2267_c1_g1:340	si_a777	TRINITY_DN2267_c1_g1	329	349	340	-27.00	-18.00	0.666666666666667	4.5	3-13,347-337;15-21,335-329	1-2,349-348[UP5];14-14,336-336[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AGAAAUAAAAGAGUUGAAUAA&UGAUUCAACUCUUCUAUUUUU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2267_c1_g1_340_TPlot.pdf
TRINITY_DN2267_c1_g1:427	si_s808	TRINITY_DN2267_c1_g1	416	438	427	-28.60	-19.30	0.674825174825175	10	1-9,438-430;11-19,426-418	10-10,429-427[AILt];20-21,417-416[UP3]	..(((((((((...(((((((((&)))))))))--.)))))))))..	AAAAGAAAAGGAACAACGGAGGU&AUCUUCGUU--ACCUUUUCUUAA	2	0.999986515640482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2267_c1_g1_427_TPlot.pdf
TRINITY_DN2267_c1_g1:431	si_s806	TRINITY_DN2267_c1_g1	418	440	431	-28.60	-19.00	0.664335664335664	11	3-11,438-430;13-21,426-418	1-2,440-439[UP5];12-12,429-427[AILt]	(((((((((...(((((((((..&..)))))))))--.)))))))))	AAGAAAAGGAACAACGGAGGUUU&UUAUCUUCGUU--ACCUUUUCUU	4	0.999999999992811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2267_c1_g1_431_TPlot.pdf
TRINITY_DN2267_c1_g1:481	si_s81	TRINITY_DN2267_c1_g1	470	489	481	-28.90	-19.00	0.657439446366782	3	1-7,489-483;9-13,482-478;15-21,476-470	8-8,x-x[BULq];14-14,477-477[SIL]	(((((((.(((((-(((((((&))))))).))))).)))))))	AGAAGAAAAAAGG-AAGAAAA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2267_c1_g1_481_TPlot.pdf
TRINITY_DN2267_c1_g1:503	si_s77	TRINITY_DN2267_c1_g1	492	512	503	-25.50	-16.90	0.662745098039216	4	1-12,512-501;15-21,498-492	13-14,500-499[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAAUAAAAGAGGAAAAA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2267_c1_g1_503_TPlot.pdf
TRINITY_DN2267_c1_g1:512	si_s68	TRINITY_DN2267_c1_g1	501	524	512	-23.10	-15.50	0.670995670995671	10	1-5,524-520;6-8,516-514;10-21,512-501	x-x,519-517[BULt];9-9,513-513[SIL]	((((((((((((.(((...(((((&)))))---))).))))))))))))	AAAGAGGAAAAACAGAAAAGGUUG&CAACU---UCUAUUUUUUUUCUUU	2	0.999999999999369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2267_c1_g1_512_TPlot.pdf
TRINITY_DN2267_c2_g1:2286	si_s72	TRINITY_DN2267_c2_g1	2275	2300	2286	-24.10	-17.50	0.726141078838174	14.5	1-6,2300-2295;7-19,2289-2277	x-x,2294-2290[BULt];20-21,2276-2275[UP3]	..(((((((((((((.....((((((&))))))-----)))))))))))))..	AUGGAGAGAAAAAGAACUUCAUGGAA&UUCUAU-----UUUUUUUCUUUCCUU	4	0.999999999999421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2267_c2_g1_2286_TPlot.pdf
TRINITY_DN2267_c2_g1:2288	si_s70	TRINITY_DN2267_c2_g1	2277	2302	2288	-25.80	-20.00	0.775193798449612	13.5	2-8,2301-2295;9-21,2289-2277	1-1,2302-2302[UP5];x-x,2294-2290[BULt]	(((((((((((((.....(((((((.&.)))))))-----)))))))))))))	GGAGAGAAAAAGAACUUCAUGGAAGA&ACUUCUAU-----UUUUUUUCUUUCC	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2267_c2_g1_2288_TPlot.pdf
TRINITY_DN2267_c2_g1:2682	si_s552	TRINITY_DN2267_c2_g1	2671	2691	2682	-21.10	-14.10	0.66824644549763	7.5	4-12,2688-2680;14-21,2678-2671	1-3,2691-2689[UP5];13-13,2679-2679[SIL]	((((((((.(((((((((...&...))))))))).))))))))	CGAGAAUAAUAAUUUUAUAGU&AAAAUAGAAUUAAUAUUUUCG	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN2267_c2_g1_2682_TPlot.pdf
TRINITY_DN2267_c2_g1:2974	si_a42	TRINITY_DN2267_c2_g1	2963	2983	2974	-43.30	-29.50	0.681293302540416	6.5	1-2,2983-2982;4-17,2980-2967;19-19,2965-2965	3-3,2981-2981[SIL];18-18,2966-2966[SIL];20-21,2964-2963[UP3]	..(.((((((((((((((.((&)).)))))))))))))).)..	CAAGUCCUGGACCUGCCGUUC&GACCGGUAGGUCUAGGAGUCG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a42_TRINITY_DN2267_c2_g1_2974_TPlot.pdf
TRINITY_DN2267_c2_g1:2976	si_a40	TRINITY_DN2267_c2_g1	2965	2985	2976	-40.50	-29.50	0.728395061728395	7.5	3-4,2983-2982;6-19,2980-2967;21-21,2965-2965	1-2,2985-2984[UP5];5-5,2981-2981[SIL];20-20,2966-2966[SIL]	(.((((((((((((((.((..&..)).)))))))))))))).)	AGUCCUGGACCUGCCGUUCGA&AAGACCGGUAGGUCUAGGAGU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN2267_c2_g1_2976_TPlot.pdf
TRINITY_DN22681_c0_g3:987	si_a393	TRINITY_DN22681_c0_g3	976	996	987	-22.70	-17.00	0.748898678414097	5	1-6,996-991;8-14,989-983;16-21,981-976	7-7,990-990[SIL];15-15,982-982[SIL]	((((((.(((((((.((((((&)))))).))))))).))))))	GAAGCAUUUCUGUAAUCUUAA&UUAAGAAUAUAGAAUUGUUUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN22681_c0_g3_987_TPlot.pdf
TRINITY_DN226_c0_g1:1593	si_s68	TRINITY_DN226_c0_g1	1582	1602	1593	-23.10	-19.60	0.848484848484849	5	1-7,1602-1596;9-21,1594-1582	8-8,1595-1595[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GGAGAAGGAAAAUUGGAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN226_c0_g1_1593_TPlot.pdf
TRINITY_DN226_c0_g1:1595	si_s66	TRINITY_DN226_c0_g1	1584	1604	1595	-26.30	-18.00	0.684410646387833	7	3-9,1602-1596;11-21,1594-1584	1-2,1604-1603[UP5];10-10,1595-1595[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AGAAGGAAAAUUGGAGUUGGU&AGCAACUUCUAUUUUUUUUCU	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN226_c0_g1_1595_TPlot.pdf
TRINITY_DN226_c0_g1:4403	si_s832	TRINITY_DN226_c0_g1	4392	4412	4403	-25.40	-17.10	0.673228346456693	3.5	2-12,4411-4401;15-21,4398-4392	1-1,4412-4412[UP5];13-14,4400-4399[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	CUUUUUUAUAAUUGUUUUUCU&UGAAAAACAAUUUGAAAGAAG	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s832_TRINITY_DN226_c0_g1_4403_TPlot.pdf
TRINITY_DN22711_c0_g1:170	si_s424	TRINITY_DN22711_c0_g1	157	179	170	-22.90	-15.30	0.668122270742358	6	1-5,179-175;7-13,173-167;14-21,164-157	6-6,174-174[SIL];x-x,166-165[BULt]	((((((((..(((((((.(((((&))))).)))))))--))))))))	GUGGUUAUAGUGUUAUACAGAGU&AUUCUAUAUAACA--AUAAUUAC	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN22711_c0_g1_170_TPlot.pdf
TRINITY_DN2271_c0_g1:1518	si_s811	TRINITY_DN2271_c0_g1	1508	1527	1518	-26.40	-18.20	0.689393939393939	5.5	1-3,1527-1525;5-15,1523-1513;17-20,1512-1509	4-4,1524-1524[SIL];16-16,x-x[BULq];21-21,1508-1508[UP3]	.((((-(((((((((((.(((&))).))))))))))).)))).	AUAUU-GGAAAAGGUAAGGGA&UUCGUUACCUUUUCUUAAUAA	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN2271_c0_g1_1518_TPlot.pdf
TRINITY_DN2271_c0_g1:1519	si_s810	TRINITY_DN2271_c0_g1	1509	1528	1519	-27.90	-21.20	0.759856630824373	4.5	1-4,1528-1525;6-16,1523-1513;18-21,1512-1509	5-5,1524-1524[SIL];17-17,x-x[BULq]	((((-(((((((((((.((((&)))).))))))))))).))))	UAUU-GGAAAAGGUAAGGGAG&CUUCGUUACCUUUUCUUAAUA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN2271_c0_g1_1519_TPlot.pdf
TRINITY_DN2271_c0_g1:1521	si_s808	TRINITY_DN2271_c0_g1	1510	1530	1521	-28.60	-20.70	0.723776223776224	9.5	3-6,1528-1525;8-18,1523-1513	1-2,1530-1529[UP5];7-7,1524-1524[SIL];19-21,1512-1510[UP3]	...(((((((((((.((((..&..)))).)))))))))))...	AUUGGAAAAGGUAAGGGAGGA&AUCUUCGUUACCUUUUCUUAA	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2271_c0_g1_1521_TPlot.pdf
TRINITY_DN2271_c0_g1:413	si_s551	TRINITY_DN2271_c0_g1	404	422	413	-21.30	-14.60	0.685446009389671	4.5	1-11,422-412;15-21,410-404	12-14,411-411[AILq]	(((((((.--(((((((((((&)))))))))))...)))))))	GAAAAUGC--AUUCUAUUUUG&CAAAAUAGAAUUAAUAUUUUC	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN2271_c0_g1_413_TPlot.pdf
TRINITY_DN2273_c0_g1:1283	si_a139	TRINITY_DN2273_c0_g1	1273	1292	1283	-25.90	-17.50	0.675675675675676	7	2-10,1291-1283;12-20,1282-1274	1-1,1292-1292[UP5];11-11,x-x[BULq];21-21,1273-1273[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	UGACAAUAAC-AUUGAUUGCA&AGUAAUUAAUCGUUGUUGUUU	0	0.162727292540748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN2273_c0_g1_1283_TPlot.pdf
TRINITY_DN2273_c0_g1:1284	si_a138	TRINITY_DN2273_c0_g1	1274	1293	1284	-26.30	-17.50	0.665399239543726	8	3-11,1291-1283;13-21,1282-1274	1-2,1293-1292[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GACAAUAAC-AUUGAUUGCAU&UAGUAAUUAAUCGUUGUUGUU	2	0.980657087003412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN2273_c0_g1_1284_TPlot.pdf
TRINITY_DN2273_c0_g1:1287	si_a471	TRINITY_DN2273_c0_g1	1276	1296	1287	-21.10	-14.90	0.706161137440758	9	3-12,1294-1285;14-19,1283-1278	1-2,1296-1295[UP5];13-13,1284-1284[SIL];20-21,1277-1276[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	CAAUAACAUUGAUUGCAUGGA&AAUAUGUAAUUAUUGUUAUAU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2273_c0_g1_1287_TPlot.pdf
TRINITY_DN22743_c0_g1:698	si_a497	TRINITY_DN22743_c0_g1	688	707	698	-32.00	-21.10	0.659375	4.5	1-13,707-695;15-18,694-691	14-14,x-x[BULq];19-21,690-688[UP3]	...((((-(((((((((((((&))))))))))))).))))...	GCAGAAG-UGAAAAACGACAU&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN22743_c0_g1_698_TPlot.pdf
TRINITY_DN22743_c0_g1:699	si_a496	TRINITY_DN22743_c0_g1	689	708	699	-32.40	-21.90	0.675925925925926	4	1-14,708-695;16-19,694-691	15-15,x-x[BULq];20-21,690-689[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	CAGAAG-UGAAAAACGACAUG&UAUGUCGUUUUUCGUCUUCCU	3	0.999999997320845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN22743_c0_g1_699_TPlot.pdf
TRINITY_DN22743_c0_g1:700	si_a495	TRINITY_DN22743_c0_g1	690	709	700	-31.90	-21.90	0.686520376175549	4.5	2-15,708-695;17-20,694-691	1-1,709-709[UP5];16-16,x-x[BULq];21-21,690-690[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AGAAG-UGAAAAACGACAUGG&AUAUGUCGUUUUUCGUCUUCC	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN22743_c0_g1_700_TPlot.pdf
TRINITY_DN22743_c0_g1:748	si_s1	TRINITY_DN22743_c0_g1	737	757	748	-18.70	-13.50	0.72192513368984	8	1-5,757-753;7-19,751-739	6-6,752-752[SIL];20-21,738-737[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	CCAUGAUGAGUAGUGAAGAAA&UUUUUAUAUUACUUAUUAUUA	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN22743_c0_g1_748_TPlot.pdf
TRINITY_DN22749_c0_g1:253	si_s694	TRINITY_DN22749_c0_g1	242	262	253	-23.90	-17.60	0.736401673640168	15.5	9-21,254-242	1-8,262-255[UP5]	(((((((((((((........&........)))))))))))))	CUGAUAAAUCGACAAAAUUUA&UUUAAUUAGUCGAUUUAUUAG	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN22749_c0_g1_253_TPlot.pdf
TRINITY_DN2274_c0_g1:1571	si_s85	TRINITY_DN2274_c0_g1	1559	1587	1571	-33.80	-21.98	0.650295857988166	20.5	1-6,1587-1582;9-14,1572-1567;15-21,1565-1559	7-8,1581-1573[AILt];x-x,1566-1566[BULt]	(((((((.((((((.........((((((&))))))-------..))))))-)))))))	GCGAGGAGAGAAGAUUUUGAUUUGGAGAG&CUUUCC-------UUUCUUCU-UCUUCGC	2	0.999999999999944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2274_c0_g1_1571_TPlot.pdf
TRINITY_DN22752_c0_g2:821	si_a325	TRINITY_DN22752_c0_g2	810	829	821	-25.90	-18.72	0.722779922779923	10	1-5,829-825;10-21,821-810	6-9,824-822[AILq]	((((((((((((...-(((((&)))))....))))))))))))	ACAGGGAGUAAAUAC-UCGUG&CAUGAUUUUUUUAUUCCUUGU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN22752_c0_g2_821_TPlot.pdf
TRINITY_DN2275_c0_g1:449	si_a378	TRINITY_DN2275_c0_g1	437	458	449	-23.80	-16.40	0.689075630252101	6.5	1-8,458-451;10-12,449-447;13-20,445-438	9-9,450-450[SIL];x-x,446-446[BULt];21-21,437-437[UP3]	.((((((((.(((.((((((((&)))))))).)))-)))))))).	ACUUAGUUCUGAAUUCGUUUUU&AAAAAUGAUUUC-GAAUUAAGA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a378_TRINITY_DN2275_c0_g1_449_TPlot.pdf
TRINITY_DN2275_c0_g1:596	si_a897	TRINITY_DN2275_c0_g1	585	605	596	-21.20	-17.50	0.825471698113208	6	1-18,605-588	19-21,587-585[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACAGUGUUACUUGUUAUUAUU&AGUAAUAAUAAGUAAUAUAAA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN2275_c0_g1_596_TPlot.pdf
TRINITY_DN2275_c0_g1:597	si_a896	TRINITY_DN2275_c0_g1	586	606	597	-21.60	-17.50	0.810185185185185	6	2-19,605-588	1-1,606-606[UP5];20-21,587-586[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAGUGUUACUUGUUAUUAUUU&UAGUAAUAAUAAGUAAUAUAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN2275_c0_g1_597_TPlot.pdf
TRINITY_DN2275_c0_g1:599	si_a894	TRINITY_DN2275_c0_g1	588	608	599	-21.70	-17.00	0.783410138248848	8	4-21,605-588	1-3,608-606[UP5]	((((((((((((((((((...&...))))))))))))))))))	GUGUUACUUGUUAUUAUUUAA&UAUAGUAAUAAUAAGUAAUAU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN2275_c0_g1_599_TPlot.pdf
TRINITY_DN2275_c0_g1:600	si_a893	TRINITY_DN2275_c0_g1	589	609	600	-21.70	-15.70	0.723502304147465	9	5-21,605-589	1-4,609-606[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGUUACUUGUUAUUAUUUAAA&AUAUAGUAAUAAUAAGUAAUA	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN2275_c0_g1_600_TPlot.pdf
TRINITY_DN2275_c0_g1:601	si_a892	TRINITY_DN2275_c0_g1	590	610	601	-21.30	-14.60	0.685446009389671	11	6-21,605-590	1-5,610-606[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUUACUUGUUAUUAUUUAAAU&AAUAUAGUAAUAAUAAGUAAU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN2275_c0_g1_601_TPlot.pdf
TRINITY_DN2277_c0_g1:282	si_s692	TRINITY_DN2277_c0_g1	271	291	282	-24.20	-16.10	0.665289256198347	8	1-3,291-289;5-18,287-274	4-4,288-288[SIL];19-21,273-271[UP3]	...((((((((((((((.(((&))).))))))))))))))...	CCAAAAUCGGCUAAUUGUAUU&AGUUUAAUUAGUCGAUUUAUU	1	0.0833025001996971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN2277_c0_g1_282_TPlot.pdf
TRINITY_DN22782_c0_g1:249	si_s88	TRINITY_DN22782_c0_g1	236	258	249	-34.80	-23.70	0.681034482758621	9.5	4-14,255-245;15-21,242-236	1-3,258-256[UP5];x-x,244-243[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GAAGCGAAGGGAAGAGGAGAUAG&UCCUUUCUUCUUCU--UCGCUUC	4	0.99999999999716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN22782_c0_g1_249_TPlot.pdf
TRINITY_DN22786_c0_g1:261	si_s896	TRINITY_DN22786_c0_g1	250	270	261	-31.60	-25.30	0.800632911392405	6.5	2-14,269-257;17-21,254-250	1-1,270-270[UP5];15-16,256-255[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UGGAAGGGAAGGGGGAGCCUC&UAGGCUUUCUCUUCAAUUUCA	1	0.00344359931700666	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN22786_c0_g1_261_TPlot.pdf
TRINITY_DN2278_c0_g1:26	si_a351	TRINITY_DN2278_c0_g1	15	34	26	-20.50	-13.60	0.663414634146341	8.5	4-8,31-27;10-21,26-15	1-3,34-32[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	AUCAAAAUGGAA-UAAUGGAA&AAAUAUUAAUUCUAUUUUGAU	3	0.999998604714447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2278_c0_g1_26_TPlot.pdf
TRINITY_DN2278_c0_g1:442	si_s807	TRINITY_DN2278_c0_g1	431	455	442	-28.90	-19.00	0.657439446366782	15.5	3-7,453-449;8-18,444-434	1-2,455-454[UP5];x-x,448-445[BULt];19-21,433-431[UP3]	...(((((((((((....(((((..&..)))))----)))))))))))...	UUCGAAGAGGUAGCUAUCGAAGAAC&UAUCUUC----GUUACCUUUUCUUA	2	0.99999993609218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2278_c0_g1_442_TPlot.pdf
TRINITY_DN2278_c0_g1:443	si_s806	TRINITY_DN2278_c0_g1	432	456	443	-28.60	-19.00	0.664335664335664	16.5	4-8,453-449;9-19,444-434	1-3,456-454[UP5];x-x,448-445[BULt];20-21,433-432[UP3]	..(((((((((((....(((((...&...)))))----)))))))))))..	UCGAAGAGGUAGCUAUCGAAGAACC&UUAUCUUC----GUUACCUUUUCUU	3	0.99999999999475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2278_c0_g1_443_TPlot.pdf
TRINITY_DN2278_c0_g1:627	si_a70	TRINITY_DN2278_c0_g1	617	636	627	-23.90	-16.80	0.702928870292887	5	1-11,636-626;13-20,625-618	12-12,x-x[BULq];21-21,617-617[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	UAUGAGAGA-AAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999344938649954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2278_c0_g1_627_TPlot.pdf
TRINITY_DN2278_c0_g1:628	si_a69	TRINITY_DN2278_c0_g1	618	637	628	-24.00	-17.50	0.729166666666667	3	1-12,637-626;14-21,625-618	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	AUGAGAGA-AAUUUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2278_c0_g1_628_TPlot.pdf
TRINITY_DN2278_c0_g1:629	si_a68	TRINITY_DN2278_c0_g1	619	638	629	-25.40	-16.60	0.653543307086614	4	2-13,637-626;15-21,625-619	1-1,638-638[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UGAGAGA-AAUUUGGAAGAAC&CUUCUUUCAAAUUGUUUUUCA	2	0.999999998617314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2278_c0_g1_629_TPlot.pdf
TRINITY_DN227_c0_g3:1342	si_a69	TRINITY_DN227_c0_g3	1331	1351	1342	-24.00	-18.00	0.75	6.5	2-7,1350-1345;9-19,1343-1333	1-1,1351-1351[UP5];8-8,1344-1344[SIL];20-21,1332-1331[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	GGGAAGAACGAUUAGAAAGAC&UUCUUUCAAAUUGUUUUUCAU	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN227_c0_g3_1342_TPlot.pdf
TRINITY_DN227_c0_g3:1801	si_s896	TRINITY_DN227_c0_g3	1791	1810	1801	-31.60	-20.60	0.651898734177215	10	4-14,1807-1797;17-20,1795-1792	1-3,1810-1808[UP5];15-16,1796-1796[AILq];21-21,1791-1791[UP3]	.((((.-(((((((((((...&...)))))))))))..)))).	CGAGAG-GGAGAGAGAGCGAU&UAGGCUUUCUCUUCAAUUUCA	3	0.999999905516913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN227_c0_g3_1801_TPlot.pdf
TRINITY_DN227_c0_g3:1803	si_a497	TRINITY_DN227_c0_g3	1794	1812	1803	-32.00	-21.00	0.65625	8	1-11,1812-1802;14-21,1801-1794	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	GAGGGAGA--GAGAGCGAUAU&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN227_c0_g3_1803_TPlot.pdf
TRINITY_DN227_c0_g3:1804	si_a496	TRINITY_DN227_c0_g3	1795	1813	1804	-32.40	-21.20	0.654320987654321	6.5	1-12,1813-1802;15-21,1801-1795	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGGGAGA--GAGAGCGAUAUA&UAUGUCGUUUUUCGUCUUCCU	3	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN227_c0_g3_1804_TPlot.pdf
TRINITY_DN227_c0_g3:1833	si_s86	TRINITY_DN227_c0_g3	1822	1842	1833	-32.90	-24.00	0.729483282674772	6.5	2-14,1841-1829;16-20,1827-1823	1-1,1842-1842[UP5];15-15,1828-1828[SIL];21-21,1822-1822[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	CGCGAGCGGGAAGAAAGGGGC&UUUCCUUUCUUCUUCUUCGCU	3	0.999991880123019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN227_c0_g3_1833_TPlot.pdf
TRINITY_DN227_c0_g3:1834	si_s85	TRINITY_DN227_c0_g3	1823	1843	1834	-33.80	-23.70	0.701183431952663	7.5	3-15,1841-1829;17-21,1827-1823	1-2,1843-1842[UP5];16-16,1828-1828[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GCGAGCGGGAAGAAAGGGGCG&CUUUCCUUUCUUCUUCUUCGC	3	0.999999973068369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN227_c0_g3_1834_TPlot.pdf
TRINITY_DN227_c0_g3:1883	si_s312	TRINITY_DN227_c0_g3	1872	1892	1883	-29.00	-23.50	0.810344827586207	10	4-20,1889-1873	1-3,1892-1890[UP5];21-21,1872-1872[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGACAGGGGGGAUAGGAUGAG&AAAAUUCUGUCCUUCUUGUUA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN227_c0_g3_1883_TPlot.pdf
TRINITY_DN227_c0_g3:1939	si_s75	TRINITY_DN227_c0_g3	1929	1948	1939	-24.00	-20.30	0.845833333333333	6.5	1-13,1948-1936;15-21,1935-1929	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	GGAAAGG-AGGAGAAGGAGUA&UAUUUUUUUUCUUUCCUUUCU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN227_c0_g3_1939_TPlot.pdf
TRINITY_DN227_c0_g3:1940	si_s74	TRINITY_DN227_c0_g3	1930	1949	1940	-25.00	-21.90	0.876	5.5	1-14,1949-1936;16-21,1935-1930	15-15,x-x[BULq]	((((((-((((((((((((((&)))))))))))))).))))))	GAAAGG-AGGAGAAGGAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN227_c0_g3_1940_TPlot.pdf
TRINITY_DN227_c0_g3:1941	si_s73	TRINITY_DN227_c0_g3	1931	1950	1941	-24.00	-20.10	0.8375	5.5	1-15,1950-1936;17-21,1935-1931	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	AAAGG-AGGAGAAGGAGUAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN227_c0_g3_1941_TPlot.pdf
TRINITY_DN227_c0_g3:1943	si_a551	TRINITY_DN227_c0_g3	1929	1952	1943	-31.60	-20.60	0.651898734177215	8	2-13,1951-1940;15-19,1938-1934;20-21,1930-1929	1-1,1952-1952[UP5];14-14,1939-1939[SIL];x-x,1933-1931[BULt]	((...(((((.((((((((((((.&.)))))))))))).)))))---))	GGAAAGGAGGAGAAGGAGUAGAUC&AAUCUAUUUCUUUAUCUCC---CC	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN227_c0_g3_1943_TPlot.pdf
TRINITY_DN227_c0_g3:1944	si_a550	TRINITY_DN227_c0_g3	1933	1953	1944	-30.90	-20.50	0.663430420711974	8	3-14,1951-1940;16-20,1938-1934	1-2,1953-1952[UP5];15-15,1939-1939[SIL];21-21,1933-1933[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AGGAGGAGAAGGAGUAGAUCG&CAAUCUAUUUCUUUAUCUCCC	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN227_c0_g3_1944_TPlot.pdf
TRINITY_DN227_c0_g3:1951	si_a543	TRINITY_DN227_c0_g3	1940	1964	1951	-28.70	-19.40	0.67595818815331	13.5	2-6,1963-1959;7-8,1954-1953;10-21,1951-1940	1-1,1964-1964[UP5];x-x,1958-1955[BULt];9-9,1952-1952[SIL]	((((((((((((.((....(((((.&.)))))----)).))))))))))))	GAAGGAGUAGAUCGAGAUCGCCGAG&AUCGGU----UCAAUCUAUUUCUUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN227_c0_g3_1951_TPlot.pdf
TRINITY_DN227_c0_g3:2063	si_s76	TRINITY_DN227_c0_g3	2051	2072	2063	-23.60	-15.70	0.665254237288135	10	3-5,2070-2068;7-11,2066-2062;12-21,2060-2051	1-2,2072-2071[UP5];6-6,2067-2067[SIL];x-x,2061-2061[BULt]	((((((((((.(((((.(((..&..))).)))))-))))))))))	GAGAAAGGGAUAGAGAUAAGGA&AUUUUUUUUCU-UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN227_c0_g3_2063_TPlot.pdf
TRINITY_DN227_c0_g3:2126	si_s810	TRINITY_DN227_c0_g3	2115	2135	2126	-27.90	-20.00	0.716845878136201	9.5	1-6,2135-2130;9-16,2127-2120	7-8,2129-2128[SIL];17-21,2119-2115[UP3]	.....((((((((..((((((&))))))..)))))))).....	AGCACGGAAAAGGGAACGAAG&CUUCGUUACCUUUUCUUAAUA	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN227_c0_g3_2126_TPlot.pdf
TRINITY_DN227_c0_g3:2127	si_s809	TRINITY_DN227_c0_g3	2116	2136	2127	-28.50	-21.60	0.757894736842105	8.5	1-7,2136-2130;10-17,2127-2120	8-9,2129-2128[SIL];18-21,2119-2116[UP3]	....((((((((..(((((((&)))))))..))))))))....	GCACGGAAAAGGGAACGAAGA&UCUUCGUUACCUUUUCUUAAU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN227_c0_g3_2127_TPlot.pdf
TRINITY_DN227_c0_g3:2132	si_s804	TRINITY_DN227_c0_g3	2121	2142	2132	-27.90	-20.60	0.738351254480287	7	1-4,2142-2139;6-12,2136-2130;15-21,2127-2121	5-5,2138-2137[AILt];13-14,2129-2128[SIL]	(((((((..(((((((..((((&))))-.)))))))..)))))))	GAAAAGGGAACGAAGAGAAAGA&UUUU-AUCUUCGUUACCUUUUC	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN227_c0_g3_2132_TPlot.pdf
TRINITY_DN227_c0_g3:2138	si_s79	TRINITY_DN227_c0_g3	2126	2147	2138	-26.20	-17.40	0.66412213740458	6.5	1-11,2147-2137;12-15,2135-2132;17-21,2130-2126	x-x,2136-2136[BULt];16-16,2131-2131[SIL]	(((((.((((.(((((((((((&)))))))))))-)))).)))))	GGGAACGAAGAGAAAGAAGAGA&UUUUUUCUUUC-CUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN227_c0_g3_2138_TPlot.pdf
TRINITY_DN227_c0_g3:720	si_a373	TRINITY_DN227_c0_g3	709	729	720	-28.00	-21.20	0.757142857142857	5.5	1-13,729-717;16-18,714-712	14-15,716-715[SIL];19-21,711-709[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	UCCCGAUUUCAUUUUUGAUCU&GGAUCAAAAAUGAUUUCGAAU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN227_c0_g3_720_TPlot.pdf
TRINITY_DN2280_c0_g1:12186	si_s703	TRINITY_DN2280_c0_g1	12177	12195	12186	-32.80	-23.00	0.701219512195122	4.5	1-13,12195-12183;17-21,12181-12177	14-16,12182-12182[AILq]	(((((.--(((((((((((((&)))))))))))))...)))))	CCCUGA--GCUAAUAGAUCGA&UCGAUUUAUUAGUGAACAGGG	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s703_TRINITY_DN2280_c0_g1_12186_TPlot.pdf
TRINITY_DN2280_c0_g1:12194	si_s695	TRINITY_DN2280_c0_g1	12183	12203	12194	-24.70	-16.20	0.65587044534413	13	5-6,12199-12198;9-21,12195-12183	1-4,12203-12200[UP5];7-8,12197-12196[SIL]	(((((((((((((..((....&....))..)))))))))))))	GCUAAUAGAUCGAGAGAAGGA&UUAAUUAGUCGAUUUAUUAGU	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN2280_c0_g1_12194_TPlot.pdf
TRINITY_DN2280_c0_g1:12668	si_s638	TRINITY_DN2280_c0_g1	12657	12676	12668	-40.30	-27.80	0.689826302729529	8.5	1-7,12676-12670;9-18,12669-12660	8-8,x-x[BULq];19-21,12659-12657[UP3]	...((((((((((-(((((((&))))))).))))))))))...	UGGCGGGGGCGAA-GUCUGCG&CGUAGGCGUUUGCCCUCGAUA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN2280_c0_g1_12668_TPlot.pdf
TRINITY_DN2280_c0_g1:12848	si_a404	TRINITY_DN2280_c0_g1	12837	12857	12848	-21.70	-14.70	0.67741935483871	12.5	1-14,12857-12844	15-21,12843-12837[UP3]	.......((((((((((((((&)))))))))))))).......	GUUCGCCGAGCAGGGCGAUUC&GAAUUGUUUUGUUUAUAUUUA	2	0.999999958142429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2280_c0_g1_12848_TPlot.pdf
TRINITY_DN2280_c0_g1:12851	si_a401	TRINITY_DN2280_c0_g1	12840	12860	12851	-22.60	-14.90	0.65929203539823	14	4-17,12857-12844	1-3,12860-12858[UP5];18-21,12843-12840[UP3]	....((((((((((((((...&...))))))))))))))....	CGCCGAGCAGGGCGAUUCCAC&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999990978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2280_c0_g1_12851_TPlot.pdf
TRINITY_DN2280_c0_g1:12852	si_a400	TRINITY_DN2280_c0_g1	12841	12861	12852	-22.80	-14.90	0.653508771929825	14.5	5-18,12857-12844	1-4,12861-12858[UP5];19-21,12843-12841[UP3]	...((((((((((((((....&....))))))))))))))...	GCCGAGCAGGGCGAUUCCACG&UAUAGAAUUGUUUUGUUUAUA	3	0.999999999937953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2280_c0_g1_12852_TPlot.pdf
TRINITY_DN2280_c0_g1:12853	si_a399	TRINITY_DN2280_c0_g1	12842	12862	12853	-22.60	-14.90	0.65929203539823	15	6-19,12857-12844	1-5,12862-12858[UP5];20-21,12843-12842[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCGAGCAGGGCGAUUCCACGA&AUAUAGAAUUGUUUUGUUUAU	2	0.999999170064157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2280_c0_g1_12853_TPlot.pdf
TRINITY_DN2280_c0_g1:12854	si_a398	TRINITY_DN2280_c0_g1	12843	12863	12854	-22.40	-14.90	0.665178571428572	15.5	7-20,12857-12844	1-6,12863-12858[UP5];21-21,12843-12843[UP3]	.((((((((((((((......&......)))))))))))))).	CGAGCAGGGCGAUUCCACGAC&AAUAUAGAAUUGUUUUGUUUA	2	0.999990483393813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2280_c0_g1_12854_TPlot.pdf
TRINITY_DN2280_c0_g1:6068	si_s81	TRINITY_DN2280_c0_g1	6057	6077	6068	-28.90	-19.30	0.667820069204152	10	1-7,6077-6071;9-10,6069-6068;13-20,6065-6058	8-8,6070-6070[SIL];11-12,6067-6066[SIL];21-21,6057-6057[UP3]	.((((((((..((.(((((((&))))))).))..)))))))).	CGGAGGAGACUGGCGAGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2280_c0_g1_6068_TPlot.pdf
TRINITY_DN2280_c0_g1:6606	si_a23	TRINITY_DN2280_c0_g1	6595	6615	6606	-22.80	-15.30	0.671052631578947	10.5	1-9,6615-6607;11-19,6605-6597;21-21,6595-6595	10-10,6606-6606[SIL];20-20,6596-6596[SIL]	(.(((((((((.(((((((((&))))))))).))))))))).)	UGUUGGAGCUGCGGGUGAGUG&UAUUUAUUUUUAGUUCUAAGA	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN2280_c0_g1_6606_TPlot.pdf
TRINITY_DN2280_c0_g1:6863	si_s797	TRINITY_DN2280_c0_g1	6852	6872	6863	-30.00	-19.54	0.651333333333333	13	1-8,6872-6865;14-20,6859-6853	9-13,6864-6860[SIL];21-21,6852-6852[UP3]	.(((((((.....((((((((&)))))))).....))))))).	GAGCGAGGCCUGCGUACGGGC&GCUCGUAUUUUAUCUUCGUUA	4	0.999999999544369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2280_c0_g1_6863_TPlot.pdf
TRINITY_DN2280_c0_g1:6896	si_a758	TRINITY_DN2280_c0_g1	6884	6905	6896	-34.00	-24.00	0.705882352941177	8	1-7,6905-6899;9-18,6897-6888;19-21,6886-6884	8-8,6898-6898[SIL];x-x,6887-6887[BULt]	(((.((((((((((.(((((((&))))))).))))))))))-)))	CAGCUCAAGAGCUUCGAGGAGG&CCUCCUUUGGGUUUUUGA-UUG	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2280_c0_g1_6896_TPlot.pdf
TRINITY_DN2280_c0_g1:6897	si_a757	TRINITY_DN2280_c0_g1	6886	6906	6897	-33.10	-22.90	0.691842900302115	9	2-8,6905-6899;10-19,6897-6888	1-1,6906-6906[UP5];9-9,6898-6898[SIL];20-21,6887-6886[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	GCUCAAGAGCUUCGAGGAGGA&ACCUCCUUUGGGUUUUUGAUU	2	0.996655159151393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN2280_c0_g1_6897_TPlot.pdf
TRINITY_DN2280_c0_g1:6898	si_a756	TRINITY_DN2280_c0_g1	6887	6907	6898	-33.10	-22.90	0.691842900302115	10	3-9,6905-6899;11-20,6897-6888	1-2,6907-6906[UP5];10-10,6898-6898[SIL];21-21,6887-6887[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CUCAAGAGCUUCGAGGAGGAG&AACCUCCUUUGGGUUUUUGAU	2	0.996304971364308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2280_c0_g1_6898_TPlot.pdf
TRINITY_DN2280_c0_g1:6899	si_a755	TRINITY_DN2280_c0_g1	6888	6908	6899	-34.90	-22.80	0.653295128939828	10.5	4-10,6905-6899;12-21,6897-6888	1-3,6908-6906[UP5];11-11,6898-6898[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UCAAGAGCUUCGAGGAGGAGG&GAACCUCCUUUGGGUUUUUGA	2	0.999596841779756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN2280_c0_g1_6899_TPlot.pdf
TRINITY_DN2280_c0_g1:6905	si_a502	TRINITY_DN2280_c0_g1	6894	6914	6905	-32.10	-22.20	0.691588785046729	9	2-7,6913-6908;9-19,6906-6896	1-1,6914-6914[UP5];8-8,6907-6907[SIL];20-21,6895-6894[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	GCUUCGAGGAGGAGGAGGAAG&GUUUUUCGUCUUCCUUGGAAU	2	0.999849180564006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2280_c0_g1_6905_TPlot.pdf
TRINITY_DN2280_c0_g1:6906	si_a501	TRINITY_DN2280_c0_g1	6895	6916	6906	-33.50	-24.50	0.73134328358209	9	1-6,6916-6911;7-8,6909-6908;10-20,6906-6896	x-x,6910-6910[BULt];9-9,6907-6907[SIL];21-21,6895-6895[UP3]	.(((((((((((.((.((((((&))))))-)).))))))))))).	CUUCGAGGAGGAGGAGGAAGCG&CGUUUU-UCGUCUUCCUUGGAA	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2280_c0_g1_6906_TPlot.pdf
TRINITY_DN2280_c0_g1:6907	si_a500	TRINITY_DN2280_c0_g1	6896	6917	6907	-34.40	-24.30	0.706395348837209	8.5	2-7,6916-6911;8-9,6909-6908;11-21,6906-6896	1-1,6917-6917[UP5];x-x,6910-6910[BULt];10-10,6907-6907[SIL]	(((((((((((.((.((((((.&.))))))-)).)))))))))))	UUCGAGGAGGAGGAGGAAGCGG&UCGUUUU-UCGUCUUCCUUGGA	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2280_c0_g1_6907_TPlot.pdf
TRINITY_DN2280_c0_g1:6908	si_a499	TRINITY_DN2280_c0_g1	6897	6918	6908	-35.20	-23.20	0.659090909090909	9.5	2-8,6917-6911;9-10,6909-6908;12-21,6906-6897	1-1,6918-6918[UP5];x-x,6910-6910[BULt];11-11,6907-6907[SIL]	((((((((((.((.(((((((.&.)))))))-)).))))))))))	UCGAGGAGGAGGAGGAAGCGGA&GUCGUUUU-UCGUCUUCCUUGG	3	0.999999999996568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN2280_c0_g1_6908_TPlot.pdf
TRINITY_DN2280_c0_g1:6909	si_s87	TRINITY_DN2280_c0_g1	6899	6919	6909	-32.90	-22.80	0.693009118541034	7.5	1-4,6919-6916;5-17,6914-6902;19-21,6901-6899	x-x,6915-6915[BULt];18-18,x-x[BULq]	(((-(((((((((((((.((((&))))-))))))))))))).)))	GAG-GAGGAGGAGGAAGCGGAG&UUCC-UUUCUUCUUCUUCGCUU	2	0.99999997609241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2280_c0_g1_6909_TPlot.pdf
TRINITY_DN2280_c0_g1:6911	si_s84	TRINITY_DN2280_c0_g1	6900	6921	6911	-32.30	-25.50	0.789473684210526	7.5	1-6,6921-6916;7-20,6914-6901	x-x,6915-6915[BULt];21-21,6900-6900[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	AGGAGGAGGAGGAAGCGGAGGA&UCUUUC-CUUUCUUCUUCUUCG	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2280_c0_g1_6911_TPlot.pdf
TRINITY_DN2280_c0_g1:6912	si_s83	TRINITY_DN2280_c0_g1	6901	6922	6912	-30.90	-25.50	0.825242718446602	7	1-7,6922-6916;8-21,6914-6901	x-x,6915-6915[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	GGAGGAGGAGGAAGCGGAGGAG&UUCUUUC-CUUUCUUCUUCUUC	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2280_c0_g1_6912_TPlot.pdf
TRINITY_DN2280_c0_g1:6913	si_s82	TRINITY_DN2280_c0_g1	6902	6923	6913	-28.90	-23.70	0.820069204152249	8	1-8,6923-6916;9-21,6914-6902	x-x,6915-6915[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	GAGGAGGAGGAAGCGGAGGAGG&UUUCUUUC-CUUUCUUCUUCUU	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2280_c0_g1_6913_TPlot.pdf
TRINITY_DN2280_c0_g1:6914	si_s81	TRINITY_DN2280_c0_g1	6903	6924	6914	-28.90	-22.50	0.778546712802768	8.5	2-9,6923-6916;10-21,6914-6903	1-1,6924-6924[UP5];x-x,6915-6915[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	AGGAGGAGGAAGCGGAGGAGGC&UUUUCUUUC-CUUUCUUCUUCU	4	0.999985278941187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2280_c0_g1_6914_TPlot.pdf
TRINITY_DN2280_c0_g1:6915	si_s805	TRINITY_DN2280_c0_g1	6904	6924	6915	-28.60	-18.90	0.660839160839161	13.5	6-12,6919-6913;14-21,6911-6904	1-5,6924-6920[UP5];13-13,6912-6912[SIL]	((((((((.(((((((.....&.....))))))).))))))))	GGAGGAGGAAGCGGAGGAGGC&UUUAUCUUCGUUACCUUUUCU	2	0.999999697158264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN2280_c0_g1_6915_TPlot.pdf
TRINITY_DN2280_c0_g1:6916	si_s80	TRINITY_DN2280_c0_g1	6904	6925	6916	-28.20	-21.20	0.75177304964539	10.5	3-10,6923-6916;11-21,6914-6904	1-2,6925-6924[UP5];x-x,6915-6915[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GGAGGAGGAAGCGGAGGAGGCC&UUUUUCUUUC-CUUUCUUCUUC	4	0.99999999713921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2280_c0_g1_6916_TPlot.pdf
TRINITY_DN2280_c0_g1:6918	si_s78	TRINITY_DN2280_c0_g1	6906	6927	6918	-26.20	-17.60	0.67175572519084	14	5-12,6923-6916;13-21,6914-6906	1-4,6927-6924[UP5];x-x,6915-6915[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	AGGAGGAAGCGGAGGAGGCCGG&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2280_c0_g1_6918_TPlot.pdf
TRINITY_DN2280_c0_g1:6937	si_s92	TRINITY_DN2280_c0_g1	6926	6949	6937	-34.90	-22.70	0.650429799426934	12	2-7,6948-6943;8-15,6939-6932;17-19,6930-6928	1-1,6949-6949[UP5];x-x,6942-6940[BULt];16-16,6931-6931[SIL];20-21,6927-6926[UP3]	..(((.((((((((...((((((.&.))))))---)))))))).)))..	GGCCGCAGCGAGGAUCAAGAGGAC&UUCUUCU---UCUUCGCUUCGGAU	2	0.999999999833343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2280_c0_g1_6937_TPlot.pdf
TRINITY_DN2280_c0_g1:6943	si_s797	TRINITY_DN2280_c0_g1	6931	6953	6943	-30.00	-19.90	0.663333333333333	9.5	1-6,6953-6948;8-11,6945-6942;12-20,6940-6932	7-7,6947-6946[AILt];x-x,6941-6941[BULt];21-21,6931-6931[UP3]	.(((((((((.((((..((((((&))))))-.))))-))))))))).	CAGCGAGGAUCAAGAGGACGAGU&GCUCGU-AUUUU-AUCUUCGUUA	3	0.999999911084252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2280_c0_g1_6943_TPlot.pdf
TRINITY_DN2280_c0_g1:6944	si_s796	TRINITY_DN2280_c0_g1	6932	6954	6944	-30.30	-19.90	0.656765676567657	10	2-7,6953-6948;9-12,6945-6942;13-21,6940-6932	1-1,6954-6954[UP5];8-8,6947-6946[AILt];x-x,6941-6941[BULt]	(((((((((.((((..((((((.&.))))))-.))))-)))))))))	AGCGAGGAUCAAGAGGACGAGUA&AGCUCGU-AUUUU-AUCUUCGUU	2	0.99992852738258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2280_c0_g1_6944_TPlot.pdf
TRINITY_DN2280_c0_g1:8839	si_s288	TRINITY_DN2280_c0_g1	8828	8848	8839	-35.10	-23.30	0.663817663817664	11.5	4-12,8845-8837;14-18,8835-8831	1-3,8848-8846[UP5];13-13,8836-8836[SIL];19-21,8830-8828[UP3]	...(((((.(((((((((...&...))))))))).)))))...	UCCUCCGAGCGGCUGGGCUUC&UACGCCUAGUCGAUUGGAAUU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN2280_c0_g1_8839_TPlot.pdf
TRINITY_DN22818_c0_g1:3758	si_a490	TRINITY_DN22818_c0_g1	3747	3770	3758	-28.10	-19.40	0.690391459074733	12.5	4-7,3767-3764;8-20,3760-3748	1-3,3770-3768[UP5];x-x,3763-3761[BULt];21-21,3747-3747[UP3]	.(((((((((((((...((((...&...))))---))))))))))))).	CCGAAGAACGACAUCUCAUUCGAC&AUAGAAU---AUGUCGUUUUUCGU	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN22818_c0_g1_3758_TPlot.pdf
TRINITY_DN22818_c0_g1:3759	si_a489	TRINITY_DN22818_c0_g1	3748	3771	3759	-27.70	-19.10	0.689530685920578	13.5	5-8,3767-3764;9-21,3760-3748	1-4,3771-3768[UP5];x-x,3763-3761[BULt]	(((((((((((((...((((....&....))))---)))))))))))))	CGAAGAACGACAUCUCAUUCGACC&UAUAGAAU---AUGUCGUUUUUCG	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN22818_c0_g1_3759_TPlot.pdf
TRINITY_DN22818_c0_g1:4631	si_s14	TRINITY_DN22818_c0_g1	4620	4640	4631	-25.30	-16.68	0.659288537549407	7	1-12,4640-4629;16-21,4625-4620	13-15,4628-4626[SIL]	((((((...((((((((((((&))))))))))))...))))))	GUGAUCUCAGUAGUAGUAGUA&UAUUAUUACUAUAUUGAUUGC	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN22818_c0_g1_4631_TPlot.pdf
TRINITY_DN22818_c0_g1:4820	si_s647	TRINITY_DN22818_c0_g1	4809	4839	4820	-41.20	-27.70	0.672330097087379	21.5	1-5,4839-4835;6-9,4827-4824;10-21,4820-4809	x-x,4834-4828[BULt];x-x,4823-4821[BULt]	((((((((((((...((((.......(((((&)))))-------))))---))))))))))))	CCCCGGUUGUAUUAACGAGUCAGGGUGGCGA&UUGCC-------CUCG---AUACAAUCGGGG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s647_TRINITY_DN22818_c0_g1_4820_TPlot.pdf
TRINITY_DN22818_c0_g1:5633	si_a72	TRINITY_DN22818_c0_g1	5622	5642	5633	-21.90	-19.40	0.885844748858447	3.5	1-11,5642-5632;13-21,5630-5622	12-12,5631-5631[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AUGAUGAAAUACAAUUUGGAA&UUUCAAAUUGUUUUUCAUUAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN22818_c0_g1_5633_TPlot.pdf
TRINITY_DN22818_c0_g1:5635	si_a70	TRINITY_DN22818_c0_g1	5624	5644	5635	-23.90	-17.30	0.723849372384937	5.5	3-13,5642-5632;15-21,5630-5624	1-2,5644-5643[UP5];14-14,5631-5631[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GAUGAAAUACAAUUUGGAAUA&UCUUUCAAAUUGUUUUUCAUU	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN22818_c0_g1_5635_TPlot.pdf
TRINITY_DN22818_c0_g1:5803	si_a455	TRINITY_DN22818_c0_g1	5792	5812	5803	-21.10	-14.40	0.682464454976303	5.5	2-6,5811-5807;8-21,5805-5792	1-1,5812-5812[UP5];7-7,5806-5806[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GUAUUAUAUAUAAUUAUAAUA&AAUUGUUGUUAUAUAUAAUAU	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN22818_c0_g1_5803_TPlot.pdf
TRINITY_DN2281_c0_g1:2722	si_a763	TRINITY_DN2281_c0_g1	2711	2731	2722	-28.80	-18.90	0.65625	7	2-12,2730-2720;14-17,2718-2715;20-20,2712-2712	1-1,2731-2731[UP5];13-13,2719-2719[SIL];18-19,2714-2713[SIL];21-21,2711-2711[UP3]	.(..((((.(((((((((((.&.))))))))))).))))..).	CGCUUCAAGCAAGAGCCCAAG&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999939736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2281_c0_g1_2722_TPlot.pdf
TRINITY_DN2281_c0_g1:2789	si_s548	TRINITY_DN2281_c0_g1	2778	2799	2789	-22.50	-15.50	0.688888888888889	7	1-8,2799-2792;9-17,2790-2782	x-x,2791-2791[BULt];18-21,2781-2778[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	UCCUUUAAUUCUAUUUUUGGUC&GAUCAAAA-UAGAAUUAAUAUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN2281_c0_g1_2789_TPlot.pdf
TRINITY_DN2281_c0_g1:2790	si_s547	TRINITY_DN2281_c0_g1	2779	2800	2790	-24.00	-15.90	0.6625	7	2-9,2799-2792;10-18,2790-2782	1-1,2800-2800[UP5];x-x,2791-2791[BULt];19-21,2781-2779[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	CCUUUAAUUCUAUUUUUGGUCU&CGAUCAAAA-UAGAAUUAAUAU	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN2281_c0_g1_2790_TPlot.pdf
TRINITY_DN2282_c0_g1:1680	si_a758	TRINITY_DN2282_c0_g1	1663	1689	1680	-34.00	-22.50	0.661764705882353	10	1-9,1689-1681;11-15,1679-1675;16-20,1668-1664	10-10,1680-1680[SIL];x-x,1674-1669[BULt];21-21,1663-1663[UP3]	.(((((......(((((.(((((((((&))))))))).)))))------))))).	AAAUCAAAGAAGAAAGCGCAAAGGAGG&CCUCCUUUGGGUUUU------UGAUUG	2	0.99989487553627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2282_c0_g1_1680_TPlot.pdf
TRINITY_DN2282_c0_g1:1681	si_a757	TRINITY_DN2282_c0_g1	1670	1690	1681	-33.10	-23.90	0.722054380664652	7	1-10,1690-1681;12-17,1679-1674	11-11,1680-1680[SIL];18-21,1673-1670[UP3]	....((((((.((((((((((&)))))))))).))))))....	AGAAGAAAGCGCAAAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN2282_c0_g1_1681_TPlot.pdf
TRINITY_DN2282_c0_g1:1682	si_a756	TRINITY_DN2282_c0_g1	1671	1691	1682	-33.10	-24.10	0.72809667673716	7	2-11,1690-1681;13-18,1679-1674	1-1,1691-1691[UP5];12-12,1680-1680[SIL];19-21,1673-1671[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	GAAGAAAGCGCAAAGGAGGUA&AACCUCCUUUGGGUUUUUGAU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2282_c0_g1_1682_TPlot.pdf
TRINITY_DN2282_c0_g1:1683	si_a755	TRINITY_DN2282_c0_g1	1672	1692	1683	-34.90	-24.10	0.69054441260745	7	3-12,1690-1681;14-19,1679-1674	1-2,1692-1691[UP5];13-13,1680-1680[SIL];20-21,1673-1672[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	AAGAAAGCGCAAAGGAGGUAG&GAACCUCCUUUGGGUUUUUGA	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN2282_c0_g1_1683_TPlot.pdf
TRINITY_DN2282_c0_g1:1684	si_a754	TRINITY_DN2282_c0_g1	1673	1693	1684	-34.60	-24.10	0.696531791907514	8	4-13,1690-1681;15-20,1679-1674	1-3,1693-1691[UP5];14-14,1680-1680[SIL];21-21,1673-1673[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AGAAAGCGCAAAGGAGGUAGC&UGAACCUCCUUUGGGUUUUUG	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN2282_c0_g1_1684_TPlot.pdf
TRINITY_DN2282_c0_g1:1685	si_a753	TRINITY_DN2282_c0_g1	1674	1694	1685	-33.10	-24.10	0.72809667673716	9	5-14,1690-1681;16-21,1679-1674	1-4,1694-1691[UP5];15-15,1680-1680[SIL]	((((((.((((((((((....&....)))))))))).))))))	GAAAGCGCAAAGGAGGUAGCU&AUGAACCUCCUUUGGGUUUUU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN2282_c0_g1_1685_TPlot.pdf
TRINITY_DN2282_c0_g1:1686	si_a752	TRINITY_DN2282_c0_g1	1675	1695	1686	-34.80	-23.00	0.660919540229885	10.5	6-15,1690-1681;17-21,1679-1675	1-5,1695-1691[UP5];16-16,1680-1680[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	AAAGCGCAAAGGAGGUAGCUA&CAUGAACCUCCUUUGGGUUUU	2	0.984345763725476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN2282_c0_g1_1686_TPlot.pdf
TRINITY_DN2282_c0_g1:1728	si_s76	TRINITY_DN2282_c0_g1	1717	1737	1728	-23.60	-15.50	0.656779661016949	5	2-14,1736-1724;16-19,1722-1719	1-1,1737-1737[UP5];15-15,1723-1723[SIL];20-21,1718-1717[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UUGAAAAGAAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2282_c0_g1_1728_TPlot.pdf
TRINITY_DN2283_c0_g1:484	si_a767	TRINITY_DN2283_c0_g1	473	493	484	-30.10	-19.80	0.6578073089701	8	1-11,493-483;14-16,481-479;18-21,476-473	12-13,482-482[AILq];17-17,478-477[AILt]	((((..(((.-(((((((((((&)))))))))))..)))-.))))	GAGUGCGAAG-GAUCAGAGACC&GGUUUUUGAUUGAUUC-AACUC	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN2283_c0_g1_484_TPlot.pdf
TRINITY_DN2284_c0_g1:1608	si_a798	TRINITY_DN2284_c0_g1	1597	1617	1608	-34.10	-25.10	0.736070381231672	5	1-4,1617-1614;6-12,1612-1606;14-21,1604-1597	5-5,1613-1613[SIL];13-13,1605-1605[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	UCGCUUCGUGUUGGAAUAUGG&CUAUUUUCCAAUCCGAAGCGA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN2284_c0_g1_1608_TPlot.pdf
TRINITY_DN2284_c0_g1:1827	si_s298	TRINITY_DN2284_c0_g1	1816	1838	1827	-30.80	-20.50	0.665584415584416	9.5	2-9,1837-1830;10-15,1827-1822;17-21,1820-1816	1-1,1838-1838[UP5];x-x,1829-1828[BULt];16-16,1821-1821[SIL]	(((((.((((((..((((((((.&.))))))))--)))))).)))))	GGAUUGUCGCGGGUUUCCAGUCA&CGAUUGGAA--UUGCGAAAAUUC	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN2284_c0_g1_1827_TPlot.pdf
TRINITY_DN2284_c0_g1:1881	si_a119	TRINITY_DN2284_c0_g1	1870	1890	1881	-30.30	-19.74	0.651485148514851	12	2-8,1889-1883;14-20,1877-1871	1-1,1890-1890[UP5];9-13,1882-1878[SIL];21-21,1870-1870[UP3]	.(((((((.....(((((((.&.))))))).....))))))).	GAUUGCUAGCUCUCGAGCUCA&CGAGCUUGUUUUAUAGCAAUA	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN2284_c0_g1_1881_TPlot.pdf
TRINITY_DN2284_c0_g1:2102	si_s819	TRINITY_DN2284_c0_g1	2091	2111	2102	-23.00	-15.54	0.675652173913043	11	1-8,2111-2104;14-21,2098-2091	9-13,2103-2099[SIL]	((((((((.....((((((((&)))))))).....))))))))	GUUUUUCAGAAUGAGGGAAAG&CUUUUCUUAAUAAUGAAAAAC	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN2284_c0_g1_2102_TPlot.pdf
TRINITY_DN2284_c0_g1:2794	si_a497	TRINITY_DN2284_c0_g1	2783	2808	2794	-32.00	-22.30	0.696875	18	3-9,2806-2800;10-21,2794-2783	1-2,2808-2807[UP5];x-x,2799-2795[BULt]	((((((((((((.....(((((((..&..)))))))-----))))))))))))	AAGGAGGAUGAGUCCCUGAGCGGCCU&AUGUCGUUU-----UUCGUCUUCCUU	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2284_c0_g1_2794_TPlot.pdf
TRINITY_DN2284_c0_g1:3276	si_a769	TRINITY_DN2284_c0_g1	3264	3285	3276	-26.70	-17.80	0.666666666666667	8	1-10,3285-3276;12-14,3273-3271;17-21,3268-3264	11-11,3275-3274[AILt];15-16,3270-3269[SIL]	(((((..(((..((((((((((&))))))))))-.)))..)))))	AAGAGGGGAAAGCGAUCAAAGA&UUUUUGAUUG-AUUCAACUCUU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN2284_c0_g1_3276_TPlot.pdf
TRINITY_DN2284_c0_g1:3290	si_a146	TRINITY_DN2284_c0_g1	3277	3299	3290	-29.70	-19.48	0.655892255892256	11	3-15,3297-3285;18-21,3280-3277	1-2,3299-3298[UP5];16-17,3284-3281[AILt]	((((....(((((((((((((..&..)))))))))))))--..))))	GAUCAAAGAGAGCAGCGACGAGG&AAUCGUUGUUGUUUU--AAGGUC	3	0.999999954412122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN2284_c0_g1_3290_TPlot.pdf
TRINITY_DN2284_c0_g1:5576	si_a575	TRINITY_DN2284_c0_g1	5565	5585	5576	-28.60	-20.60	0.72027972027972	6.5	2-14,5584-5572;16-17,5570-5569;19-21,5567-5565	1-1,5585-5585[UP5];15-15,5571-5571[SIL];18-18,5568-5568[SIL]	(((.((.(((((((((((((.&.))))))))))))).)).)))	UCUGGUCGCAGGCAUGCGAUC&AAUCGUAUGUUUGUAACAAGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN2284_c0_g1_5576_TPlot.pdf
TRINITY_DN2284_c0_g1:5649	si_a777	TRINITY_DN2284_c0_g1	5638	5656	5649	-27.00	-18.00	0.666666666666667	9	1-6,5656-5651;9-20,5650-5639	7-8,x-x[BULq];21-21,5638-5638[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	CAGAGUGGGGGAG--GAGUCA&UGAUUCAACUCUUCUAUUUUU	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2284_c0_g1_5649_TPlot.pdf
TRINITY_DN2284_c0_g1:601	si_a399	TRINITY_DN2284_c0_g1	590	610	601	-22.60	-14.90	0.65929203539823	15.5	6-18,605-593	1-5,610-606[UP5];19-21,592-590[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAUGGCAGAGCAGUUCAACGG&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999888394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2284_c0_g1_601_TPlot.pdf
TRINITY_DN2284_c0_g1:6126	si_a58	TRINITY_DN2284_c0_g1	6115	6136	6126	-34.60	-25.80	0.745664739884393	7	2-7,6135-6130;8-20,6128-6116	1-1,6136-6136[UP5];x-x,6129-6129[BULt];21-21,6115-6115[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CUUGAAAGAAGUGGCGUCGAUC&AGUCGAC-UCGCUUCUUUCAAA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN2284_c0_g1_6126_TPlot.pdf
TRINITY_DN2284_c0_g1:621	si_a47	TRINITY_DN2284_c0_g1	611	629	621	-41.20	-29.50	0.716019417475728	7	1-6,629-624;9-18,622-613;20-21,612-611	7-8,623-623[AILq];19-19,x-x[BULq]	((-((((((((((.-((((((&))))))..)))))))))).))	CG-GUCGACUCCUC-GCCUGC&GUAGGUCUAGGAGUCGACUCG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN2284_c0_g1_621_TPlot.pdf
TRINITY_DN2284_c0_g1:622	si_a46	TRINITY_DN2284_c0_g1	611	630	622	-42.10	-28.90	0.68646080760095	8.5	2-7,629-624;10-20,622-612	1-1,630-630[UP5];8-9,623-623[AILq];21-21,611-611[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	CGGUCGACUCCUC-GCCUGCG&GGUAGGUCUAGGAGUCGACUC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN2284_c0_g1_622_TPlot.pdf
TRINITY_DN2284_c0_g1:623	si_a45	TRINITY_DN2284_c0_g1	612	631	623	-41.60	-28.90	0.694711538461538	9.5	3-8,629-624;11-21,622-612	1-2,631-630[UP5];9-10,623-623[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	GGUCGACUCCUC-GCCUGCGU&CGGUAGGUCUAGGAGUCGACU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a45_TRINITY_DN2284_c0_g1_623_TPlot.pdf
TRINITY_DN2284_c0_g1:6356	si_s96	TRINITY_DN2284_c0_g1	6342	6365	6356	-37.20	-25.70	0.690860215053763	11	1-11,6365-6355;12-18,6351-6345	x-x,6354-6352[BULt];19-21,6344-6342[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	GCAAAUCCGAGCGGGCGAAGGAGA&UCUUCUUCGCU---UCGGAUUGGA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN2284_c0_g1_6356_TPlot.pdf
TRINITY_DN2284_c0_g1:7317	si_a757	TRINITY_DN2284_c0_g1	7306	7326	7317	-33.10	-23.30	0.70392749244713	6.5	1-11,7326-7316;13-13,7314-7314;15-20,7312-7307	12-12,7315-7315[SIL];14-14,7313-7313[SIL];21-21,7306-7306[UP3]	.((((((.(.(((((((((((&))))))))))).).)))))).	CAUCAAACGGCUAGAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN2284_c0_g1_7317_TPlot.pdf
TRINITY_DN2284_c0_g1:8050	si_a594	TRINITY_DN2284_c0_g1	8039	8060	8050	-32.30	-22.40	0.693498452012384	10.5	1-4,8060-8057;7-18,8053-8042	5-6,8056-8054[AILt];19-21,8041-8039[UP3]	...((((((((((((...((((&))))-..))))))))))))...	CUGGCGGAAGUUCUGGCGCUUC&GAAG-GACAGAAUUUUCGCAAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN2284_c0_g1_8050_TPlot.pdf
TRINITY_DN2284_c0_g1:8053	si_a591	TRINITY_DN2284_c0_g1	8042	8063	8053	-33.80	-22.40	0.662721893491124	11	1-1,8063-8063;4-7,8060-8057;10-21,8053-8042	2-3,8062-8061[SIL];8-9,8056-8054[AILt]	((((((((((((...((((..(&)..))))-..))))))))))))	GCGGAAGUUCUGGCGCUUCGGG&CAAGAAG-GACAGAAUUUUCGC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN2284_c0_g1_8053_TPlot.pdf
TRINITY_DN2285_c0_g2:1913	si_a633	TRINITY_DN2285_c0_g2	1902	1922	1913	-26.40	-17.40	0.659090909090909	11	4-5,1919-1918;7-20,1916-1903	1-3,1922-1920[UP5];6-6,1917-1917[SIL];21-21,1902-1902[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	CGCUUAGAGAAGUCGUCACUC&UUAUGUCGAUUUUUUUGAGUA	4	0.999999999859519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2285_c0_g2_1913_TPlot.pdf
TRINITY_DN22870_c0_g1:53	si_s809	TRINITY_DN22870_c0_g1	41	62	53	-28.50	-19.30	0.67719298245614	7	1-13,62-50;14-16,48-46	x-x,49-49[BULt];17-21,45-41[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	CCAACGAACAAGGUAAUGAAGA&UCUUCGUUACCUU-UUCUUAAU	2	0.999911685974573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN22870_c0_g1_53_TPlot.pdf
TRINITY_DN22870_c0_g1:54	si_s808	TRINITY_DN22870_c0_g1	42	63	54	-28.60	-19.30	0.674825174825175	7	2-14,62-50;15-17,48-46	1-1,63-63[UP5];x-x,49-49[BULt];18-21,45-42[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	CAACGAACAAGGUAAUGAAGAA&AUCUUCGUUACCUU-UUCUUAA	3	0.999999983432403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN22870_c0_g1_54_TPlot.pdf
TRINITY_DN22870_c0_g1:55	si_s807	TRINITY_DN22870_c0_g1	43	64	55	-28.90	-19.30	0.667820069204152	8	3-15,62-50;16-18,48-46	1-2,64-63[UP5];x-x,49-49[BULt];19-21,45-43[UP3]	...(((.(((((((((((((..&..)))))))))))))-)))...	AACGAACAAGGUAAUGAAGAAA&UAUCUUCGUUACCUU-UUCUUA	3	0.999999998626374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN22870_c0_g1_55_TPlot.pdf
TRINITY_DN22870_c0_g1:56	si_s806	TRINITY_DN22870_c0_g1	44	65	56	-28.60	-19.30	0.674825174825175	9	4-16,62-50;17-19,48-46	1-3,65-63[UP5];x-x,49-49[BULt];20-21,45-44[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	ACGAACAAGGUAAUGAAGAAAA&UUAUCUUCGUUACCUU-UUCUU	3	0.999999998758606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN22870_c0_g1_56_TPlot.pdf
TRINITY_DN22870_c0_g1:57	si_s805	TRINITY_DN22870_c0_g1	45	66	57	-28.60	-19.30	0.674825174825175	10	5-17,62-50;18-20,48-46	1-4,66-63[UP5];x-x,49-49[BULt];21-21,45-45[UP3]	.(((.(((((((((((((....&....)))))))))))))-))).	CGAACAAGGUAAUGAAGAAAAU&UUUAUCUUCGUUACCUU-UUCU	2	0.99998908709614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN22870_c0_g1_57_TPlot.pdf
TRINITY_DN22870_c0_g1:58	si_s804	TRINITY_DN22870_c0_g1	46	67	58	-27.90	-19.00	0.681003584229391	11	6-18,62-50;19-21,48-46	1-5,67-63[UP5];x-x,49-49[BULt]	(((.(((((((((((((.....&.....)))))))))))))-)))	GAACAAGGUAAUGAAGAAAAUG&UUUUAUCUUCGUUACCUU-UUC	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN22870_c0_g1_58_TPlot.pdf
TRINITY_DN22870_c0_g1:59	si_s803	TRINITY_DN22870_c0_g1	48	68	59	-26.00	-17.60	0.676923076923077	14	7-19,62-50	1-6,68-63[UP5];20-21,49-48[UP3]	..(((((((((((((......&......)))))))))))))..	ACAAGGUAAUGAAGAAAAUGG&AUUUUAUCUUCGUUACCUUUU	2	0.999998016578191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN22870_c0_g1_59_TPlot.pdf
TRINITY_DN22870_c0_g1:60	si_s802	TRINITY_DN22870_c0_g1	49	69	60	-26.40	-17.60	0.666666666666667	14.5	8-20,62-50	1-7,69-63[UP5];21-21,49-49[UP3]	.(((((((((((((.......&.......))))))))))))).	CAAGGUAAUGAAGAAAAUGGC&UAUUUUAUCUUCGUUACCUUU	3	0.99999999929573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN22870_c0_g1_60_TPlot.pdf
TRINITY_DN22870_c0_g1:62	si_s800	TRINITY_DN22870_c0_g1	51	70	62	-29.70	-19.70	0.663299663299663	7.5	1-3,70-68;6-8,65-63;10-21,62-51	4-5,67-66[SIL];9-9,x-x[BULq]	((((((((((((-(((..(((&)))..))).))))))))))))	AGGUAAUGAAGA-AAAUGGCG&CGUAUUUUAUCUUCGUUACCU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN22870_c0_g1_62_TPlot.pdf
TRINITY_DN2287_c0_g1:432	si_s512	TRINITY_DN2287_c0_g1	420	441	432	-24.80	-16.40	0.661290322580645	7	3-14,439-428;17-20,424-421	1-2,441-440[UP5];15-16,427-425[AILt];21-21,420-420[UP3]	.((((...((((((((((((..&..))))))))))))-..)))).	CCGAACUGAAGAAUAUAGAAGA&AAUUCUAUAUUCUU-AAUUCGA	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN2287_c0_g1_432_TPlot.pdf
TRINITY_DN2288_c0_g1:866	si_s481	TRINITY_DN2288_c0_g1	855	875	866	-23.00	-15.30	0.665217391304348	9.5	3-16,873-860	1-2,875-874[UP5];17-21,859-855[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUUGAAGUAGAUAUAGGACG&GAUCCUAUAUUUAUUUAAAUA	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN2288_c0_g1_866_TPlot.pdf
TRINITY_DN22890_c0_g1:755	si_a57	TRINITY_DN22890_c0_g1	740	765	755	-36.60	-23.90	0.653005464480874	11.5	1-5,765-761;6-10,759-755;11-12,750-749;14-21,747-740	x-x,760-760[BULt];x-x,754-751[BULt];13-13,748-748[SIL]	((((((((.((....(((((.(((((&)))))-)))))----)).))))))))	UUGAAAGGCGCUCCCGAGUCAGACUC&GAGUC-GACUC----GCUUCUUUCAA	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN22890_c0_g1_755_TPlot.pdf
TRINITY_DN22894_c0_g2:72	si_s93	TRINITY_DN22894_c0_g2	61	81	72	-34.80	-23.40	0.672413793103448	6.5	2-12,80-70;14-19,68-63	1-1,81-81[UP5];13-13,69-69[SIL];20-21,62-61[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	GUUCCGAGAUGAAGAAGAGGU&UCUUCUUCUUCGCUUCGGAUU	4	0.999999999042038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN22894_c0_g2_72_TPlot.pdf
TRINITY_DN22895_c0_g2:91	si_a319	TRINITY_DN22895_c0_g2	80	100	91	-22.40	-14.70	0.65625	8.5	2-8,99-93;10-19,91-82	1-1,100-100[UP5];9-9,92-92[SIL];20-21,81-80[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UUUAGAGAGAUUUUGGGUAAC&UUUAUCCAUGAUUUUUUUAUU	2	0.999999999856464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN22895_c0_g2_91_TPlot.pdf
TRINITY_DN22899_c1_g2:87	si_a634	TRINITY_DN22899_c1_g2	76	101	87	-26.40	-18.40	0.696969696969697	13.5	2-9,100-93;10-21,87-76	1-1,101-101[UP5];x-x,92-88[BULt]	((((((((((((.....((((((((.&.))))))))-----))))))))))))	UUACUCGAAAAAUUCGUGUCGAUAUC&UAUGUCGAU-----UUUUUUGAGUAA	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN22899_c1_g2_87_TPlot.pdf
TRINITY_DN228_c0_g1:1567	si_a556	TRINITY_DN228_c0_g1	1557	1576	1567	-33.40	-22.80	0.682634730538922	10	1-11,1576-1566;13-18,1565-1560	12-12,x-x[BULq];19-21,1559-1557[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GCAACGGGG-GAUGGGGGGAU&AUUUCUUUAUCUCCCCGUGAA	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN228_c0_g1_1567_TPlot.pdf
TRINITY_DN22903_c0_g1:2645	si_a756	TRINITY_DN22903_c0_g1	2633	2654	2645	-33.10	-25.20	0.761329305135952	4.5	1-12,2654-2643;14-15,2641-2640;16-21,2638-2633	13-13,2642-2642[SIL];x-x,2639-2639[BULt]	((((((.((.((((((((((((&)))))))))))).))-))))))	AUCGAACAAGCCGAAGGGGGUU&AACCUCCUUUGGGUU-UUUGAU	1	0.0154030798505176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN22903_c0_g1_2645_TPlot.pdf
TRINITY_DN22903_c0_g1:80	si_s490	TRINITY_DN22903_c0_g1	69	89	80	-17.80	-13.50	0.758426966292135	6	3-10,87-80;12-21,78-69	1-2,89-88[UP5];11-11,79-79[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UUUUGUUUAUUUUUGAAUAUU&UUUAUUUAAAUAUAAACAAAA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN22903_c0_g1_80_TPlot.pdf
TRINITY_DN22908_c0_g1:920	si_a839	TRINITY_DN22908_c0_g1	909	929	920	-26.50	-17.40	0.656603773584906	14.5	8-16,922-914;18-21,912-909	1-7,929-923[UP5];17-17,913-913[SIL]	((((.(((((((((.......&.......))))))))).))))	GAGUGAGCAACUUCACCGCCC&AAAAAUAGAAGUUGCUAACUU	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN22908_c0_g1_920_TPlot.pdf
TRINITY_DN22908_c0_g1:964	si_a566	TRINITY_DN22908_c0_g1	952	974	964	-36.40	-24.32	0.668131868131868	10.5	1-8,974-967;12-15,962-959;16-21,957-952	9-11,966-963[AILt];x-x,958-958[BULt]	((((((.((((....((((((((&))))))))-...))))-))))))	AGACGUCGCGAAGAGACGGGGAG&CUCCCCGU-GAAUCGU-AUGUUU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN22908_c0_g1_964_TPlot.pdf
TRINITY_DN22908_c0_g1:965	si_a565	TRINITY_DN22908_c0_g1	953	975	965	-37.40	-24.92	0.666310160427808	10.5	1-9,975-967;13-16,962-959;17-21,957-953	10-12,966-963[AILt];x-x,958-958[BULt]	(((((.((((....(((((((((&)))))))))-...))))-)))))	GACGUCGCGAAGAGACGGGGAGA&UCUCCCCGU-GAAUCGU-AUGUU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN22908_c0_g1_965_TPlot.pdf
TRINITY_DN22908_c0_g1:973	si_s77	TRINITY_DN22908_c0_g1	961	982	973	-25.50	-18.10	0.709803921568627	9.5	2-6,981-977;8-14,975-969;15-21,967-961	1-1,982-982[UP5];7-7,976-976[SIL];x-x,968-968[BULt]	(((((((.(((((((.(((((.&.))))).)))))))-)))))))	GAAGAGACGGGGAGACGGAGAC&UUUUUUUUCUUUCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN22908_c0_g1_973_TPlot.pdf
TRINITY_DN22908_c0_g1:974	si_a557	TRINITY_DN22908_c0_g1	963	983	974	-33.40	-22.60	0.676646706586826	11	3-7,981-977;9-17,975-967	1-2,983-982[UP5];8-8,976-976[SIL];18-21,966-963[UP3]	....(((((((((.(((((..&..))))).)))))))))....	AGAGACGGGGAGACGGAGACG&UUUCUUUAUCUCCCCGUGAAU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN22908_c0_g1_974_TPlot.pdf
TRINITY_DN2290_c0_g1:2437	si_s73	TRINITY_DN2290_c0_g1	2423	2446	2437	-24.00	-15.60	0.65	9	1-10,2446-2437;11-16,2434-2429;17-20,2427-2424	x-x,2436-2435[BULt];x-x,2428-2428[BULt];21-21,2423-2423[UP3]	.((((.((((((..((((((((((&))))))))))--))))))-)))).	CAAGGUAAAGAACCAGAAAGUGGA&UCUAUUUUUU--UUCUUU-CCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2290_c0_g1_2437_TPlot.pdf
TRINITY_DN22916_c0_g1:1375	si_a639	TRINITY_DN22916_c0_g1	1364	1385	1375	-23.60	-15.60	0.661016949152542	10	2-4,1384-1382;6-18,1379-1367	1-1,1385-1385[UP5];5-5,1381-1380[AILt];19-21,1366-1364[UP3]	...(((((((((((((..(((.&.)))-.)))))))))))))...	UGUUAUUACUCAAAGACUGUCA&CGAU-UUUUUUGAGUAAUAUAU	4	0.999999990128624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN22916_c0_g1_1375_TPlot.pdf
TRINITY_DN22916_c0_g1:463	si_s739	TRINITY_DN22916_c0_g1	453	472	463	-35.60	-23.30	0.654494382022472	5.5	1-12,472-461;14-19,460-455	13-13,x-x[BULq];20-21,454-453[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	CCGGUUAA-CUAUUUACCUGU&ACGGGUGAAUAGAUUGACCUU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN22916_c0_g1_463_TPlot.pdf
TRINITY_DN22916_c0_g1:465	si_s737	TRINITY_DN22916_c0_g1	455	474	465	-37.60	-24.50	0.651595744680851	5.5	2-14,473-461;16-21,460-455	1-1,474-474[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	GGUUAA-CUAUUUACCUGUUC&AGACGGGUGAAUAGAUUGACC	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s737_TRINITY_DN22916_c0_g1_465_TPlot.pdf
TRINITY_DN22917_c0_g1:2392	si_s530	TRINITY_DN22917_c0_g1	2381	2401	2392	-29.50	-20.10	0.68135593220339	7	2-8,2400-2394;10-14,2392-2388;16-20,2386-2382	1-1,2401-2401[UP5];9-9,2393-2393[SIL];15-15,2387-2387[SIL];21-21,2381-2381[UP3]	.(((((.(((((.(((((((.&.))))))).))))).))))).	UUCGGAGCAGGAUUGAUUUCA&CGAAAUCAUUUUUGAUCCGAU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN22917_c0_g1_2392_TPlot.pdf
TRINITY_DN22917_c0_g1:2393	si_s529	TRINITY_DN22917_c0_g1	2382	2402	2393	-30.30	-20.00	0.66006600660066	7.5	3-9,2400-2394;11-15,2392-2388;17-21,2386-2382	1-2,2402-2401[UP5];10-10,2393-2393[SIL];16-16,2387-2387[SIL]	(((((.(((((.(((((((..&..))))))).))))).)))))	UCGGAGCAGGAUUGAUUUCAA&UCGAAAUCAUUUUUGAUCCGA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN22917_c0_g1_2393_TPlot.pdf
TRINITY_DN22917_c0_g1:2454	si_s480	TRINITY_DN22917_c0_g1	2443	2463	2454	-25.00	-17.50	0.7	10	1-12,2463-2452	13-21,2451-2443[UP3]	.........((((((((((((&)))))))))))).........	CUGGUCGCCGAUAUAGGAUCC&GGAUCCUAUAUUUAUUUAAAU	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN22917_c0_g1_2454_TPlot.pdf
TRINITY_DN22917_c0_g1:2455	si_s479	TRINITY_DN22917_c0_g1	2444	2464	2455	-26.40	-17.80	0.674242424242424	9.5	2-13,2463-2452	1-1,2464-2464[UP5];14-21,2451-2444[UP3]	........((((((((((((.&.))))))))))))........	UGGUCGCCGAUAUAGGAUCCC&CGGAUCCUAUAUUUAUUUAAA	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN22917_c0_g1_2455_TPlot.pdf
TRINITY_DN22917_c0_g1:2456	si_s478	TRINITY_DN22917_c0_g1	2445	2465	2456	-27.20	-17.80	0.654411764705882	10.5	3-14,2463-2452	1-2,2465-2464[UP5];15-21,2451-2445[UP3]	.......((((((((((((..&..)))))))))))).......	GGUCGCCGAUAUAGGAUCCCA&ACGGAUCCUAUAUUUAUUUAA	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN22917_c0_g1_2456_TPlot.pdf
TRINITY_DN22917_c0_g1:2880	si_a67	TRINITY_DN22917_c0_g1	2869	2890	2880	-27.20	-18.60	0.683823529411765	11	1-9,2890-2882;12-20,2878-2870	10-11,2881-2879[AILt];21-21,2869-2869[UP3]	.(((((((((...(((((((((&)))))))))-..))))))))).	CGGAGACAGUCAAGAAGGAGGC&GCUUCUUUC-AAAUUGUUUUUC	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN22917_c0_g1_2880_TPlot.pdf
TRINITY_DN22917_c0_g1:2882	si_a66	TRINITY_DN22917_c0_g1	2870	2891	2882	-26.70	-20.10	0.752808988764045	10	1-10,2891-2882;13-21,2878-2870	11-12,2881-2879[AILt]	(((((((((...((((((((((&))))))))))-..)))))))))	GGAGACAGUCAAGAAGGAGGCG&CGCUUCUUUC-AAAUUGUUUUU	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN22917_c0_g1_2882_TPlot.pdf
TRINITY_DN22918_c0_g2:1882	si_a411	TRINITY_DN22918_c0_g2	1871	1891	1882	-17.90	-12.00	0.670391061452514	6	1-10,1891-1882;12-17,1880-1875	11-11,1881-1881[SIL];18-21,1874-1871[UP3]	....((((((.((((((((((&)))))))))).))))))....	AACAAUUUAAUUAUAAACAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.999995814641056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN22918_c0_g2_1882_TPlot.pdf
TRINITY_DN22918_c0_g2:1886	si_a407	TRINITY_DN22918_c0_g2	1875	1895	1886	-19.80	-13.40	0.676767676767677	4	1-3,1895-1893;5-14,1891-1882;16-21,1880-1875	4-4,1892-1892[SIL];15-15,1881-1881[SIL]	((((((.((((((((((.(((&))).)))))))))).))))))	AUUUAAUUAUAAACAAACCGA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN22918_c0_g2_1886_TPlot.pdf
TRINITY_DN22918_c0_g2:543	si_a122	TRINITY_DN22918_c0_g2	532	552	543	-29.00	-18.90	0.651724137931034	8	1-4,552-549;6-11,547-542;13-19,540-534	5-5,548-548[SIL];12-12,541-541[SIL];20-21,533-532[UP3]	..(((((((.((((((.((((&)))).)))))).)))))))..	ACCUGUUGUAGUAAAAGAAGC&GCUUGUUUUAUAGCAAUAGUA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN22918_c0_g2_543_TPlot.pdf
TRINITY_DN22918_c0_g2:575	si_s898	TRINITY_DN22918_c0_g2	563	586	575	-30.70	-20.20	0.657980456026059	10	1-5,586-582;6-12,579-573;13-19,571-565	x-x,581-580[BULt];x-x,572-572[BULt];20-21,564-563[UP3]	..(((((((.(((((((..(((((&)))))--)))))))-)))))))..	CCUGGAAUUCGAAGAGACAGAGCU&GGCUU--UCUCUUC-AAUUUCAAU	4	0.999999995765342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN22918_c0_g2_575_TPlot.pdf
TRINITY_DN2291_c0_g1:3412	si_a766	TRINITY_DN2291_c0_g1	3401	3422	3412	-30.50	-20.50	0.672131147540984	11	1-5,3422-3418;8-17,3414-3405	6-7,3417-3415[AILt];18-21,3404-3401[UP3]	....((((((((((...(((((&)))))-..))))))))))....	GAUCGAAUCAAUCAUGUAGCCC&GGGUU-UUUGAUUGAUUCAACU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN2291_c0_g1_3412_TPlot.pdf
TRINITY_DN2291_c0_g1:3416	si_a762	TRINITY_DN2291_c0_g1	3405	3426	3416	-29.70	-22.20	0.747474747474748	10	2-9,3425-3418;12-21,3414-3405	1-1,3426-3426[UP5];10-11,3417-3415[AILt]	((((((((((...((((((((.&.))))))))-..))))))))))	GAAUCAAUCAUGUAGCCCAGGU&CUUUGGGUU-UUUGAUUGAUUC	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2291_c0_g1_3416_TPlot.pdf
TRINITY_DN2291_c0_g1:3766	si_s73	TRINITY_DN2291_c0_g1	3753	3775	3766	-24.00	-15.70	0.654166666666667	6.5	1-3,3775-3773;5-13,3771-3763;14-21,3760-3753	4-4,3772-3772[SIL];x-x,3762-3761[BULt]	((((((((..(((((((((.(((&))).)))))))))--))))))))	AAAGGAAGUUGAAGAAGAAAAGA&UCUAUUUUUUUUC--UUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2291_c0_g1_3766_TPlot.pdf
TRINITY_DN2291_c2_g1:487	si_s122	TRINITY_DN2291_c2_g1	473	496	487	-28.30	-18.90	0.667844522968198	10	1-10,496-487;11-17,483-477	x-x,486-484[BULt];18-21,476-473[UP3]	....(((((((...((((((((((&))))))))))---)))))))....	AAAACAACUCUAAUUCUAUUUUUC&GAAAAAUAGA---AGAGUUGAAUC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN2291_c2_g1_487_TPlot.pdf
TRINITY_DN22921_c0_g1:1235	si_a784	TRINITY_DN22921_c0_g1	1223	1244	1235	-24.70	-16.20	0.65587044534413	11	1-11,1244-1234;12-16,1232-1228	x-x,1233-1233[BULt];17-21,1227-1223[UP3]	.....(((((.(((((((((((&)))))))))))-))))).....	CGCUGAGAAAGGAUGGGGGAGU&ACUCUUCUAUU-UUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN22921_c0_g1_1235_TPlot.pdf
TRINITY_DN22921_c0_g1:1236	si_s67	TRINITY_DN22921_c0_g1	1225	1246	1236	-25.60	-17.40	0.6796875	11	1-3,1246-1244;5-19,1241-1227	4-4,1243-1242[AILt];20-21,1226-1225[UP3]	..(((((((((((((((..(((&)))-.)))))))))))))))..	CUGAGAAAGGAUGGGGGAGUGC&GCA-ACUUCUAUUUUUUUUCUU	3	0.999999993978986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN22921_c0_g1_1236_TPlot.pdf
TRINITY_DN22921_c0_g1:1237	si_s66	TRINITY_DN22921_c0_g1	1226	1247	1237	-26.30	-18.80	0.714828897338403	9.5	1-4,1247-1244;6-20,1241-1227	5-5,1243-1242[AILt];21-21,1226-1226[UP3]	.(((((((((((((((..((((&))))-.))))))))))))))).	UGAGAAAGGAUGGGGGAGUGCU&AGCA-ACUUCUAUUUUUUUUCU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN22921_c0_g1_1237_TPlot.pdf
TRINITY_DN22921_c0_g1:1516	si_a541	TRINITY_DN22921_c0_g1	1506	1525	1516	-32.20	-22.50	0.698757763975155	7.5	1-10,1525-1516;13-20,1514-1507	11-12,1515-1515[AILq];21-21,1506-1506[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	UGAGAUAGAC-GAACUGGUCG&CGAUCGGUUCAAUCUAUUUCU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a541_TRINITY_DN22921_c0_g1_1516_TPlot.pdf
TRINITY_DN22921_c0_g1:203	si_a789	TRINITY_DN22921_c0_g1	192	212	203	-24.80	-18.60	0.75	9.5	1-11,212-202;13-19,200-194	12-12,201-201[SIL];20-21,193-192[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CCUGGGAAAAGGAGGGGUAGA&UCUAUUUUUCUAUUUUCCAAU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN22921_c0_g1_203_TPlot.pdf
TRINITY_DN22921_c0_g1:2064	si_s672	TRINITY_DN22921_c0_g1	2049	2073	2064	-27.10	-19.06	0.703321033210332	9	1-13,2073-2061;16-20,2054-2050	14-15,2060-2055[AILt];21-21,2049-2049[UP3]	.(((((......(((((((((((((&)))))))))))))----..))))).	GCAUGUGGUUGACUAUGAUCAGUUC&GAAUUGAUUAUAG----AAACAUGA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s672_TRINITY_DN22921_c0_g1_2064_TPlot.pdf
TRINITY_DN22921_c0_g1:2065	si_s671	TRINITY_DN22921_c0_g1	2050	2074	2065	-27.60	-19.26	0.697826086956522	9	2-14,2073-2061;17-21,2054-2050	1-1,2074-2074[UP5];15-16,2060-2055[AILt]	(((((......(((((((((((((.&.)))))))))))))----..)))))	CAUGUGGUUGACUAUGAUCAGUUCU&CGAAUUGAUUAUAG----AAACAUG	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s671_TRINITY_DN22921_c0_g1_2065_TPlot.pdf
TRINITY_DN22921_c0_g1:2066	si_s670	TRINITY_DN22921_c0_g1	2054	2075	2066	-26.90	-17.60	0.654275092936803	9	3-15,2073-2061;17-19,2058-2056	1-2,2075-2074[UP5];16-16,2060-2059[AILt];20-21,2055-2054[UP3]	..(((..(((((((((((((..&..)))))))))))))-.)))..	UGGUUGACUAUGAUCAGUUCUA&UCGAAUUGAUUAUAG-AAACAU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s670_TRINITY_DN22921_c0_g1_2066_TPlot.pdf
TRINITY_DN22921_c0_g1:2067	si_s669	TRINITY_DN22921_c0_g1	2055	2076	2067	-26.90	-17.60	0.654275092936803	10	4-16,2073-2061;18-20,2058-2056	1-3,2076-2074[UP5];17-17,2060-2059[AILt];21-21,2055-2055[UP3]	.(((..(((((((((((((...&...)))))))))))))-.))).	GGUUGACUAUGAUCAGUUCUAU&AUCGAAUUGAUUAUAG-AAACA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s669_TRINITY_DN22921_c0_g1_2067_TPlot.pdf
TRINITY_DN22921_c0_g1:2070	si_s666	TRINITY_DN22921_c0_g1	2059	2080	2070	-31.30	-21.20	0.677316293929712	7.5	1-3,2080-2078;4-5,2076-2075;7-19,2073-2061	x-x,2077-2077[BULt];6-6,2074-2074[SIL];20-21,2060-2059[UP3]	..(((((((((((((.((.(((&)))-)).)))))))))))))..	GACUAUGAUCAGUUCUAUACCC&GGG-AUCGAAUUGAUUAUAGAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN22921_c0_g1_2070_TPlot.pdf
TRINITY_DN22921_c0_g1:2276	si_s33	TRINITY_DN22921_c0_g1	2265	2285	2276	-24.10	-16.30	0.676348547717842	9	1-14,2285-2272	15-21,2271-2265[UP3]	.......((((((((((((((&)))))))))))))).......	GCUCCUCAGAGAUUUGGUUGU&GCAACUAAAUCUUUAAUAAUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN22921_c0_g1_2276_TPlot.pdf
TRINITY_DN22921_c0_g1:2279	si_s30	TRINITY_DN22921_c0_g1	2268	2288	2279	-24.80	-16.30	0.657258064516129	11.5	4-17,2285-2272	1-3,2288-2286[UP5];18-21,2271-2268[UP3]	....((((((((((((((...&...))))))))))))))....	CCUCAGAGAUUUGGUUGUCAU&AUUGCAACUAAAUCUUUAAUA	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN22921_c0_g1_2279_TPlot.pdf
TRINITY_DN22921_c0_g1:2280	si_s29	TRINITY_DN22921_c0_g1	2269	2291	2280	-26.40	-17.50	0.662878787878788	9.5	1-3,2291-2289;4-5,2287-2286;6-18,2284-2272	x-x,2288-2288[BULt];x-x,2285-2285[BULt];19-21,2271-2269[UP3]	...(((((((((((((.((.(((&)))-))-)))))))))))))...	CUCAGAGAUUUGGUUGUCAUGUC&GAU-UG-CAACUAAAUCUUUAAU	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN22921_c0_g1_2280_TPlot.pdf
TRINITY_DN22921_c0_g1:2281	si_s28	TRINITY_DN22921_c0_g1	2270	2292	2281	-27.00	-18.50	0.685185185185185	8.5	1-4,2292-2289;5-6,2287-2286;7-19,2284-2272	x-x,2288-2288[BULt];x-x,2285-2285[BULt];20-21,2271-2270[UP3]	..(((((((((((((.((.((((&))))-))-)))))))))))))..	UCAGAGAUUUGGUUGUCAUGUCA&UGAU-UG-CAACUAAAUCUUUAA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN22921_c0_g1_2281_TPlot.pdf
TRINITY_DN22921_c0_g1:2282	si_s27	TRINITY_DN22921_c0_g1	2271	2293	2282	-27.00	-19.40	0.718518518518518	7.5	1-5,2293-2289;6-7,2287-2286;8-20,2284-2272	x-x,2288-2288[BULt];x-x,2285-2285[BULt];21-21,2271-2271[UP3]	.(((((((((((((.((.(((((&)))))-))-))))))))))))).	CAGAGAUUUGGUUGUCAUGUCAA&UUGAU-UG-CAACUAAAUCUUUA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN22921_c0_g1_2282_TPlot.pdf
TRINITY_DN22921_c0_g1:2283	si_s26	TRINITY_DN22921_c0_g1	2272	2294	2283	-26.70	-19.20	0.719101123595506	7	2-6,2293-2289;7-8,2287-2286;9-21,2284-2272	1-1,2294-2294[UP5];x-x,2288-2288[BULt];x-x,2285-2285[BULt]	(((((((((((((.((.(((((.&.)))))-))-)))))))))))))	AGAGAUUUGGUUGUCAUGUCAAA&AUUGAU-UG-CAACUAAAUCUUU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN22921_c0_g1_2283_TPlot.pdf
TRINITY_DN22921_c0_g1:2284	si_s25	TRINITY_DN22921_c0_g1	2273	2295	2284	-27.10	-18.50	0.682656826568266	9	3-7,2293-2289;8-9,2287-2286;10-21,2284-2273	1-2,2295-2294[UP5];x-x,2288-2288[BULt];x-x,2285-2285[BULt]	((((((((((((.((.(((((..&..)))))-))-))))))))))))	GAGAUUUGGUUGUCAUGUCAAAC&UAUUGAU-UG-CAACUAAAUCUU	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN22921_c0_g1_2284_TPlot.pdf
TRINITY_DN22921_c0_g1:2466	si_a149	TRINITY_DN22921_c0_g1	2451	2475	2466	-29.40	-19.90	0.67687074829932	14	1-12,2475-2464;13-14,2459-2458;16-21,2456-2451	x-x,2463-2460[BULt];15-15,2457-2457[SIL]	((((((.((....((((((((((((&))))))))))))----)).))))))	AUUGACGUUUGCAGAGAUAGCAGCG&CGUUGUUGUUUU----AAGGUCAAU	2	0.999024445860172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN22921_c0_g1_2466_TPlot.pdf
TRINITY_DN22921_c0_g1:2467	si_a148	TRINITY_DN22921_c0_g1	2452	2476	2467	-30.30	-20.10	0.663366336633663	9.5	1-13,2476-2464;14-15,2459-2458;17-21,2456-2452	x-x,2463-2460[BULt];16-16,2457-2457[SIL]	(((((.((....(((((((((((((&)))))))))))))----)).)))))	UUGACGUUUGCAGAGAUAGCAGCGA&UCGUUGUUGUUUU----AAGGUCAA	2	0.999751875834929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN22921_c0_g1_2467_TPlot.pdf
TRINITY_DN22921_c0_g1:2637	si_s298	TRINITY_DN22921_c0_g1	2626	2646	2637	-30.80	-21.00	0.681818181818182	10	1-13,2646-2634	14-21,2633-2626[UP3]	........(((((((((((((&)))))))))))))........	AUGGCGGAGCAGUUCCAGUCG&CGAUUGGAAUUGCGAAAAUUC	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN22921_c0_g1_2637_TPlot.pdf
TRINITY_DN22921_c0_g1:2638	si_s297	TRINITY_DN22921_c0_g1	2627	2647	2638	-29.80	-21.00	0.704697986577181	10	2-14,2646-2634	1-1,2647-2647[UP5];15-21,2633-2627[UP3]	.......(((((((((((((.&.))))))))))))).......	UGGCGGAGCAGUUCCAGUCGU&UCGAUUGGAAUUGCGAAAAUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN22921_c0_g1_2638_TPlot.pdf
TRINITY_DN22921_c0_g1:2639	si_s296	TRINITY_DN22921_c0_g1	2628	2648	2639	-31.60	-21.00	0.664556962025316	11	3-15,2646-2634	1-2,2648-2647[UP5];16-21,2633-2628[UP3]	......(((((((((((((..&..)))))))))))))......	GGCGGAGCAGUUCCAGUCGUG&GUCGAUUGGAAUUGCGAAAAU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN22921_c0_g1_2639_TPlot.pdf
TRINITY_DN22921_c0_g1:2640	si_s295	TRINITY_DN22921_c0_g1	2629	2649	2640	-32.20	-21.00	0.652173913043478	11.5	4-16,2646-2634	1-3,2649-2647[UP5];17-21,2633-2629[UP3]	.....(((((((((((((...&...))))))))))))).....	GCGGAGCAGUUCCAGUCGUGG&AGUCGAUUGGAAUUGCGAAAA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN22921_c0_g1_2640_TPlot.pdf
TRINITY_DN22923_c0_g1:1369	si_a19	TRINITY_DN22923_c0_g1	1358	1379	1369	-27.00	-18.10	0.67037037037037	11	2-7,1378-1373;9-19,1370-1360	1-1,1379-1379[UP5];8-8,1372-1371[AILt];20-21,1359-1358[UP3]	..(((((((((((..((((((.&.))))))-.)))))))))))..	UCGACUGAAGAUGUCAUGGGCG&AGCCUAU-UUAUUUUUAGUUCU	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN22923_c0_g1_1369_TPlot.pdf
TRINITY_DN22923_c0_g1:1567	si_a66	TRINITY_DN22923_c0_g1	1556	1576	1567	-26.70	-17.58	0.658426966292135	10	2-11,1575-1566;15-19,1562-1558	1-1,1576-1576[UP5];12-14,1565-1563[SIL];20-21,1557-1556[UP3]	..(((((...((((((((((.&.))))))))))...)))))..	GCGAACGUGGUGGAGGAAGCA&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN22923_c0_g1_1567_TPlot.pdf
TRINITY_DN22923_c0_g1:2025	si_a505	TRINITY_DN22923_c0_g1	2008	2034	2025	-33.30	-22.10	0.663663663663664	10.5	3-13,2032-2022;14-16,2016-2014;17-21,2012-2008	1-2,2034-2033[UP5];x-x,2021-2017[BULt];x-x,2013-2013[BULt]	(((((.(((.....(((((((((((..&..)))))))))))-----)))-)))))	UGCAUGUCCUGAGGAGGGAAGACGAUG&UUUCGUCUUCCUU-----GGA-AUGUA	2	0.998333984614128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN22923_c0_g1_2025_TPlot.pdf
TRINITY_DN22929_c0_g1:316	si_a306	TRINITY_DN22929_c0_g1	303	325	316	-33.50	-21.98	0.656119402985075	8	1-3,325-323;5-15,321-311;18-21,306-303	4-4,322-322[SIL];16-17,310-307[AILt]	((((....(((((((((((.(((&))).)))))))))))--..))))	UGGAAAUUGGUCUAAGCGAUUCU&AGAUUCGCUUGGAUU--UAUCCA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN22929_c0_g1_316_TPlot.pdf
TRINITY_DN2292_c0_g1:293	si_a783	TRINITY_DN2292_c0_g1	282	302	293	-24.70	-16.70	0.676113360323887	8	1-9,302-294;11-17,292-286	10-10,293-293[SIL];18-21,285-282[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AAAGGGGAAAAAAGAAGGGUU&AACUCUUCUAUUUUUCUAUUU	4	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2292_c0_g1_293_TPlot.pdf
TRINITY_DN2292_c0_g1:294	si_a782	TRINITY_DN2292_c0_g1	283	303	294	-26.40	-19.60	0.742424242424243	7	1-10,303-294;12-18,292-286	11-11,293-293[SIL];19-21,285-283[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AAGGGGAAAAAAGAAGGGUUG&CAACUCUUCUAUUUUUCUAUU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2292_c0_g1_294_TPlot.pdf
TRINITY_DN2292_c0_g1:295	si_a781	TRINITY_DN2292_c0_g1	284	304	295	-27.40	-21.20	0.773722627737226	6	1-11,304-294;13-19,292-286	12-12,293-293[SIL];20-21,285-284[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AGGGGAAAAAAGAAGGGUUGA&UCAACUCUUCUAUUUUUCUAU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN2292_c0_g1_295_TPlot.pdf
TRINITY_DN2292_c0_g1:296	si_a780	TRINITY_DN2292_c0_g1	285	305	296	-27.30	-22.10	0.80952380952381	4	1-12,305-294;14-20,292-286	13-13,293-293[SIL];21-21,285-285[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GGGGAAAAAAGAAGGGUUGAA&UUCAACUCUUCUAUUUUUCUA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN2292_c0_g1_296_TPlot.pdf
TRINITY_DN2292_c0_g1:297	si_a779	TRINITY_DN2292_c0_g1	286	306	297	-27.00	-21.70	0.803703703703704	4	2-13,305-294;15-21,292-286	1-1,306-306[UP5];14-14,293-293[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GGGAAAAAAGAAGGGUUGAAG&AUUCAACUCUUCUAUUUUUCU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN2292_c0_g1_297_TPlot.pdf
TRINITY_DN22931_c0_g1:183	si_s459	TRINITY_DN22931_c0_g1	172	192	183	-29.30	-19.20	0.655290102389078	7	2-4,191-189;6-10,187-183;12-20,181-173	1-1,192-192[UP5];5-5,188-188[SIL];11-11,182-182[SIL];21-21,172-172[UP3]	.(((((((((.(((((.(((.&.))).))))).))))))))).	AUUGGAUAUGUGAUGACUGUG&AACAAUUAUCUCAUAUCCAAC	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN22931_c0_g1_183_TPlot.pdf
TRINITY_DN22931_c0_g1:423	si_s83	TRINITY_DN22931_c0_g1	411	432	423	-30.90	-21.10	0.68284789644013	10	1-10,432-423;12-18,420-414	11-11,422-421[AILt];19-21,413-411[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	UUCGGGGAAGUUGAGGAGAGAA&UUCUUUCCUU-UCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN22931_c0_g1_423_TPlot.pdf
TRINITY_DN22931_c0_g1:424	si_s899	TRINITY_DN22931_c0_g1	413	433	424	-28.30	-20.00	0.706713780918728	9.5	3-17,431-417	1-2,433-432[UP5];18-21,416-413[UP3]	....(((((((((((((((..&..)))))))))))))))....	CGGGGAAGUUGAGGAGAGAAC&GCUUUCUCUUCAAUUUCAAUU	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN22931_c0_g1_424_TPlot.pdf
TRINITY_DN22931_c0_g1:427	si_s79	TRINITY_DN22931_c0_g1	415	436	427	-26.20	-18.50	0.706106870229008	11.5	5-14,432-423;16-21,420-415	1-4,436-433[UP5];15-15,422-421[AILt]	((((((..((((((((((....&....))))))))))-.))))))	GGGAAGUUGAGGAGAGAACGGG&UUUUUUCUUUCCUU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN22931_c0_g1_427_TPlot.pdf
TRINITY_DN22931_c0_g1:429	si_s77	TRINITY_DN22931_c0_g1	417	438	429	-25.50	-17.20	0.674509803921569	9.5	2-5,437-434;7-16,432-423;18-21,420-417	1-1,438-438[UP5];6-6,433-433[SIL];17-17,422-421[AILt]	((((..((((((((((.((((.&.)))).))))))))))-.))))	GAAGUUGAGGAGAGAACGGGAU&UUUUUUUUCUUUCCUU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN22931_c0_g1_429_TPlot.pdf
TRINITY_DN22931_c0_g1:435	si_s72	TRINITY_DN22931_c0_g1	423	444	435	-24.10	-17.00	0.705394190871369	11.5	1-5,444-440;8-11,437-434;12-21,432-423	6-7,439-438[SIL];x-x,433-433[BULt]	((((((((((.((((..(((((&)))))..))))-))))))))))	GAGGAGAGAACGGGAUUUGGAG&UUCUAUUUUUU-UUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN22931_c0_g1_435_TPlot.pdf
TRINITY_DN22931_c0_g1:436	si_s71	TRINITY_DN22931_c0_g1	424	445	436	-25.70	-19.00	0.739299610894942	11.5	1-6,445-440;9-12,437-434;13-21,432-424	7-8,439-438[SIL];x-x,433-433[BULt]	(((((((((.((((..((((((&))))))..))))-)))))))))	AGGAGAGAACGGGAUUUGGAGG&CUUCUAUUUUUU-UUCUUUCCU	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN22931_c0_g1_436_TPlot.pdf
TRINITY_DN22931_c0_g1:437	si_s70	TRINITY_DN22931_c0_g1	425	446	437	-25.80	-17.70	0.686046511627907	11	2-7,445-440;10-13,437-434;14-21,432-425	1-1,446-446[UP5];8-9,439-438[SIL];x-x,433-433[BULt]	((((((((.((((..((((((.&.))))))..))))-))))))))	GGAGAGAACGGGAUUUGGAGGA&ACUUCUAUUUUUU-UUCUUUCC	2	0.999999999729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN22931_c0_g1_437_TPlot.pdf
TRINITY_DN22931_c0_g1:439	si_a68	TRINITY_DN22931_c0_g1	427	448	439	-25.40	-18.40	0.724409448818898	7.5	1-13,448-436;15-15,434-434;16-20,432-428	14-14,435-435[SIL];x-x,433-433[BULt];21-21,427-427[UP3]	.(((((.(.(((((((((((((&))))))))))))).)-))))).	AGAGAACGGGAUUUGGAGGAGG&CUUCUUUCAAAUUGU-UUUUCA	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN22931_c0_g1_439_TPlot.pdf
TRINITY_DN22931_c0_g1:456	si_s69	TRINITY_DN22931_c0_g1	441	465	456	-23.40	-15.26	0.652136752136752	17.5	2-10,464-456;13-21,449-441	1-1,465-465[UP5];11-12,455-450[AILt]	(((((((((......(((((((((.&.)))))))))----..)))))))))	GGAGGAGGGUACAAUGAUAGAGGUG&AACUUCUAUU----UUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN22931_c0_g1_456_TPlot.pdf
TRINITY_DN22931_c0_g1:599	si_s810	TRINITY_DN22931_c0_g1	588	609	599	-27.90	-18.80	0.673835125448029	11	1-7,609-603;9-17,600-592	8-8,602-601[AILt];18-21,591-588[UP3]	....(((((((((..(((((((&)))))))-.)))))))))....	GUGGAAGAAGAGGAGGAUGAAG&CUUCGUU-ACCUUUUCUUAAUA	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN22931_c0_g1_599_TPlot.pdf
TRINITY_DN22931_c0_g1:600	si_s809	TRINITY_DN22931_c0_g1	589	610	600	-28.50	-20.40	0.715789473684211	9.5	1-8,610-603;10-18,600-592	9-9,602-601[AILt];19-21,591-589[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	UGGAAGAAGAGGAGGAUGAAGA&UCUUCGUU-ACCUUUUCUUAAU	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN22931_c0_g1_600_TPlot.pdf
TRINITY_DN22931_c0_g1:601	si_s808	TRINITY_DN22931_c0_g1	590	611	601	-28.60	-20.40	0.713286713286713	9.5	2-9,610-603;11-19,600-592	1-1,611-611[UP5];10-10,602-601[AILt];20-21,591-590[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	GGAAGAAGAGGAGGAUGAAGAA&AUCUUCGUU-ACCUUUUCUUAA	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN22931_c0_g1_601_TPlot.pdf
TRINITY_DN22931_c0_g1:604	si_s79	TRINITY_DN22931_c0_g1	592	615	604	-26.20	-18.30	0.698473282442748	8.5	2-9,614-607;10-14,604-600;15-21,598-592	1-1,615-615[UP5];x-x,606-605[BULt];x-x,599-599[BULt]	(((((((.(((((..((((((((.&.))))))))--)))))-)))))))	AAGAAGAGGAGGAUGAAGAAGAGG&UUUUUUCUU--UCCUU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN22931_c0_g1_604_TPlot.pdf
TRINITY_DN22931_c0_g1:608	si_s77	TRINITY_DN22931_c0_g1	594	617	608	-25.50	-17.70	0.694117647058824	9.5	2-11,616-607;12-16,604-600;17-21,598-594	1-1,617-617[UP5];x-x,606-605[BULt];x-x,599-599[BULt]	(((((.(((((..((((((((((.&.))))))))))--)))))-)))))	GAAGAGGAGGAUGAAGAAGAGGAU&UUUUUUUUCUU--UCCUU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN22931_c0_g1_608_TPlot.pdf
TRINITY_DN22931_c0_g1:619	si_s806	TRINITY_DN22931_c0_g1	607	628	619	-28.60	-20.10	0.702797202797203	8.5	1-5,628-624;7-12,622-617;13-21,615-607	6-6,623-623[SIL];x-x,616-616[BULt]	(((((((((.((((((.(((((&))))).))))))-)))))))))	AAGAAGAGGAUGAUGAUGGUGA&UUAUCUUCGUUA-CCUUUUCUU	4	0.99998152635743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN22931_c0_g1_619_TPlot.pdf
TRINITY_DN22931_c0_g1:620	si_s805	TRINITY_DN22931_c0_g1	608	629	620	-28.60	-19.40	0.678321678321678	8.5	2-6,628-624;8-13,622-617;14-21,615-608	1-1,629-629[UP5];7-7,623-623[SIL];x-x,616-616[BULt]	((((((((.((((((.(((((.&.))))).))))))-))))))))	AGAAGAGGAUGAUGAUGGUGAU&UUUAUCUUCGUUA-CCUUUUCU	3	0.999999981292735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN22931_c0_g1_620_TPlot.pdf
TRINITY_DN22932_c0_g3:432	si_s87	TRINITY_DN22932_c0_g3	419	441	432	-32.90	-22.60	0.68693009118541	9	1-5,441-437;8-15,434-427;16-21,424-419	6-7,436-435[SIL];x-x,426-425[BULt]	((((((..((((((((..(((((&)))))..))))))))--))))))	AGGCGAGCGGAGGAAGCUGGGAA&UUCCUUUCUUCUUCU--UCGCUU	3	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN22932_c0_g3_432_TPlot.pdf
TRINITY_DN22932_c0_g3:714	si_s466	TRINITY_DN22932_c0_g3	702	723	714	-36.40	-23.80	0.653846153846154	9	3-11,721-713;14-14,710-710;16-21,707-702	1-2,723-722[UP5];12-13,712-711[SIL];15-15,709-708[AILt]	((((((..(..(((((((((..&..)))))))))..)-.))))))	AGGAUCGAGGGGGGUAUGAGUC&AUCUCAUAUCCAAC-GGAUCCU	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s466_TRINITY_DN22932_c0_g3_714_TPlot.pdf
TRINITY_DN22932_c0_g3:737	si_s72	TRINITY_DN22932_c0_g3	726	746	737	-24.10	-16.00	0.663900414937759	9	1-7,746-740;9-10,738-737;12-19,735-728	8-8,739-739[SIL];11-11,736-736[SIL];20-21,727-726[UP3]	..((((((((.((.(((((((&))))))).)).))))))))..	ACGGAGAGAGCAACGAUAGAG&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN22932_c0_g3_737_TPlot.pdf
TRINITY_DN22932_c0_g3:739	si_s70	TRINITY_DN22932_c0_g3	728	748	739	-25.80	-18.80	0.728682170542636	7	2-9,747-740;11-12,738-737;14-21,735-728	1-1,748-748[UP5];10-10,739-739[SIL];13-13,736-736[SIL]	((((((((.((.((((((((.&.)))))))).)).))))))))	GGAGAGAGCAACGAUAGAGGA&ACUUCUAUUUUUUUUCUUUCC	3	0.999998392297536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN22932_c0_g3_739_TPlot.pdf
TRINITY_DN22932_c0_g3:772	si_a322	TRINITY_DN22932_c0_g3	761	781	772	-27.00	-17.80	0.659259259259259	6.5	2-16,780-766	1-1,781-781[UP5];17-21,765-761[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUGCCUAAGAAAAUCAUGGAG&AUCCAUGAUUUUUUUAUUCCU	2	0.999931998497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN22932_c0_g3_772_TPlot.pdf
TRINITY_DN22932_c0_g3:773	si_a321	TRINITY_DN22932_c0_g3	762	782	773	-26.70	-17.80	0.666666666666667	7.5	3-17,780-766	1-2,782-781[UP5];18-21,765-762[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGCCUAAGAAAAUCAUGGAGU&UAUCCAUGAUUUUUUUAUUCC	2	0.997549565409419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN22932_c0_g3_773_TPlot.pdf
TRINITY_DN22932_c0_g3:774	si_a320	TRINITY_DN22932_c0_g3	763	783	774	-24.40	-17.80	0.729508196721312	8.5	4-18,780-766	1-3,783-781[UP5];19-21,765-763[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCCUAAGAAAAUCAUGGAGUA&UUAUCCAUGAUUUUUUUAUUC	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN22932_c0_g3_774_TPlot.pdf
TRINITY_DN22932_c0_g3:775	si_a319	TRINITY_DN22932_c0_g3	764	784	775	-22.40	-17.80	0.794642857142857	9.5	5-19,780-766	1-4,784-781[UP5];20-21,765-764[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCUAAGAAAAUCAUGGAGUAC&UUUAUCCAUGAUUUUUUUAUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN22932_c0_g3_775_TPlot.pdf
TRINITY_DN22933_c0_g1:2920	si_s798	TRINITY_DN22933_c0_g1	2907	2929	2920	-29.30	-19.18	0.654607508532423	12	1-5,2929-2925;9-16,2921-2914;17-21,2911-2907	6-8,2924-2922[SIL];x-x,2913-2912[BULt]	(((((..((((((((...(((((&)))))...))))))))--)))))	GUAACGGGAAGGUGGUGGGCGAG&CUCGUAUUUUAUCUUC--GUUAC	4	0.999989419620488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN22933_c0_g1_2920_TPlot.pdf
TRINITY_DN22933_c0_g1:2964	si_s378	TRINITY_DN22933_c0_g1	2953	2975	2964	-43.80	-30.80	0.703196347031964	7.5	1-9,2975-2967;10-14,2964-2960;16-21,2958-2953	x-x,2966-2965[BULt];15-15,2959-2959[SIL]	((((((.(((((..(((((((((&)))))))))--))))).))))))	UGUGAGUCGGACCCGCGCGAGUG&CGCUCGCGU--GUCCGCCUUACA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN22933_c0_g1_2964_TPlot.pdf
TRINITY_DN22933_c0_g1:2967	si_s377	TRINITY_DN22933_c0_g1	2954	2976	2967	-44.10	-29.40	0.666666666666667	8.5	2-10,2975-2967;11-15,2964-2960;17-21,2958-2954	1-1,2976-2976[UP5];x-x,2966-2965[BULt];16-16,2959-2959[SIL]	(((((.(((((..(((((((((.&.)))))))))--))))).)))))	GUGAGUCGGACCCGCGCGAGUGC&UCGCUCGCGU--GUCCGCCUUAC	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN22933_c0_g1_2967_TPlot.pdf
TRINITY_DN22933_c0_g1:3019	si_s379	TRINITY_DN22933_c0_g1	3009	3029	3019	-42.50	-29.30	0.689411764705882	8	1-4,3029-3026;6-6,3023-3023;8-16,3021-3013;18-21,3012-3009	5-5,3025-3024[AILt];7-7,3022-3022[SIL];17-17,x-x[BULq]	((((-(((((((((.(..((((&))))-.).))))))))).))))	GUGU-GGGCGGACAGGAGGAGC&GCUC-GCGUGUCCGCCUUACAU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN22933_c0_g1_3019_TPlot.pdf
TRINITY_DN22939_c0_g1:201	si_a356	TRINITY_DN22939_c0_g1	190	210	201	-26.90	-18.00	0.669144981412639	8	4-6,207-205;8-20,203-191	1-3,210-208[UP5];7-7,204-204[SIL];21-21,190-190[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	UUCCGAUCAAAAUAAAAUAGA&UUAAUUCUAUUUUGAUCGGAU	2	0.984539391222183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN22939_c0_g1_201_TPlot.pdf
TRINITY_DN2293_c0_g1:675	si_a64	TRINITY_DN2293_c0_g1	662	686	675	-29.40	-19.38	0.659183673469388	13	1-9,686-678;10-12,675-673;15-21,668-662	x-x,677-676[BULt];13-14,672-669[AILt]	(((((((....(((..(((((((((&)))))))))--)))--..)))))))	GAGCGGUACAGGAACUGGAAGCGAG&CUCGCUUCU--UUC--AAAUUGUUU	4	0.999999511643789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN2293_c0_g1_675_TPlot.pdf
TRINITY_DN2293_c0_g1:679	si_a756	TRINITY_DN2293_c0_g1	668	689	679	-33.10	-22.10	0.667673716012085	9	1-6,689-684;7-10,682-679;12-19,677-670	x-x,683-683[BULt];11-11,678-678[SIL];20-21,669-668[UP3]	..((((((((.((((.((((((&))))))-)))).))))))))..	UACAGGAACUGGAAGCGAGGUU&AACCUC-CUUUGGGUUUUUGAU	3	0.999999964244092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2293_c0_g1_679_TPlot.pdf
TRINITY_DN2293_c0_g1:682	si_a753	TRINITY_DN2293_c0_g1	671	692	682	-33.10	-22.60	0.682779456193353	8	3-9,690-684;10-13,682-679;15-21,677-671	1-2,692-691[UP5];x-x,683-683[BULt];14-14,678-678[SIL]	(((((((.((((.(((((((..&..)))))))-)))).)))))))	AGGAACUGGAAGCGAGGUUCUA&AUGAACCUC-CUUUGGGUUUUU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN2293_c0_g1_682_TPlot.pdf
TRINITY_DN2293_c0_g1:780	si_s96	TRINITY_DN2293_c0_g1	769	791	780	-37.20	-24.80	0.666666666666667	9	1-8,791-784;9-17,781-773;19-20,771-770	x-x,783-782[BULt];18-18,772-772[SIL];21-21,769-769[UP3]	.((.(((((((((..((((((((&))))))))--))))))))).)).	GUCUGUCCGGAGCUGGAGGAAGA&UCUUCUUC--GCUUCGGAUUGGA	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN2293_c0_g1_780_TPlot.pdf
TRINITY_DN2293_c0_g1:781	si_s95	TRINITY_DN2293_c0_g1	770	792	781	-36.30	-25.50	0.702479338842975	7.5	1-9,792-784;10-18,781-773;20-21,771-770	x-x,783-782[BULt];19-19,772-772[SIL]	((.(((((((((..(((((((((&)))))))))--))))))))).))	UCUGUCCGGAGCUGGAGGAAGAA&UUCUUCUUC--GCUUCGGAUUGG	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN2293_c0_g1_781_TPlot.pdf
TRINITY_DN2293_c0_g1:783	si_s92	TRINITY_DN2293_c0_g1	773	792	783	-34.90	-27.70	0.793696275071633	7	1-10,792-783;13-21,781-773	11-12,782-782[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	GUCCGGAGCU-GGAGGAAGAA&UUCUUCUUCUUCGCUUCGGAU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2293_c0_g1_783_TPlot.pdf
TRINITY_DN2293_c0_g1:784	si_s94	TRINITY_DN2293_c0_g1	771	793	784	-35.50	-27.50	0.774647887323944	8	1-10,793-784;11-19,781-773	x-x,783-782[BULt];20-21,772-771[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	CUGUCCGGAGCUGGAGGAAGAAG&CUUCUUCUUC--GCUUCGGAUUG	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2293_c0_g1_784_TPlot.pdf
TRINITY_DN2293_c0_g1:785	si_s93	TRINITY_DN2293_c0_g1	772	794	785	-34.80	-27.50	0.790229885057471	8	2-11,793-784;12-20,781-773	1-1,794-794[UP5];x-x,783-782[BULt];21-21,772-772[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	UGUCCGGAGCUGGAGGAAGAAGU&UCUUCUUCUUC--GCUUCGGAUU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2293_c0_g1_785_TPlot.pdf
TRINITY_DN2293_c0_g1:789	si_s89	TRINITY_DN2293_c0_g1	776	805	789	-35.30	-23.10	0.654390934844193	18	1-5,805-801;6-15,793-784;16-21,781-776	x-x,800-794[BULt];x-x,783-782[BULt]	((((((..((((((((((.......(((((&)))))-------))))))))))--))))))	CGGAGCUGGAGGAAGAAGUGCCUGCAGAGG&CCUUU-------CUUCUUCUUC--GCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2293_c0_g1_789_TPlot.pdf
TRINITY_DN22950_c0_g1:1000	si_a320	TRINITY_DN22950_c0_g1	985	1009	1000	-24.40	-16.40	0.672131147540984	15	2-8,1008-1002;10-12,1000-998;13-21,993-985	1-1,1009-1009[UP5];9-9,1001-1001[SIL];x-x,997-994[BULt]	(((((((((....(((.(((((((.&.))))))).)))----)))))))))	GAAUGAAGAAGCUGAUGGUGGAUGU&UUAUCCAUGAUU----UUUUUAUUC	4	0.999999320523381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN22950_c0_g1_1000_TPlot.pdf
TRINITY_DN22950_c0_g1:1851	si_a1	TRINITY_DN22950_c0_g1	1840	1860	1851	-28.30	-18.50	0.653710247349823	8	1-6,1860-1855;9-18,1852-1843	7-8,1854-1853[SIL];19-21,1842-1840[UP3]	...((((((((((..((((((&))))))..))))))))))...	AGAUUCUCUUCAAGGUCGAUU&AAUUGAAAUUGAAGAGAAAGC	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN22950_c0_g1_1851_TPlot.pdf
TRINITY_DN22950_c0_g1:3338	si_a804	TRINITY_DN22950_c0_g1	3327	3345	3338	-37.20	-26.30	0.706989247311828	7	2-3,3344-3343;6-21,3342-3327	1-1,3345-3345[UP5];4-5,x-x[BULq]	((((((((((((((((--((.&.))..))))))))))))))))	UCUUCUUCGCUUUGGG--GGU&UCCAAUCCGAAGCGAAGAAGA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN22950_c0_g1_3338_TPlot.pdf
TRINITY_DN22950_c0_g1:5679	si_a626	TRINITY_DN22950_c0_g1	5668	5687	5679	-30.20	-21.40	0.708609271523179	9.5	2-3,5686-5685;5-18,5684-5671	1-1,5687-5687[UP5];4-4,x-x[BULq];19-21,5670-5668[UP3]	...((((((((((((((-((.&.)).))))))))))))))...	UACAGUCGACGUGAUGC-CCA&AGGCGUAUUAUGUCGAUUUUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN22950_c0_g1_5679_TPlot.pdf
TRINITY_DN22950_c0_g1:5855	si_a42	TRINITY_DN22950_c0_g1	5843	5864	5855	-43.30	-29.80	0.688221709006928	7	1-7,5864-5858;9-13,5856-5852;15-20,5849-5844	8-8,5857-5857[SIL];14-14,5851-5850[AILt];21-21,5843-5843[UP3]	.((((((..(((((.(((((((&))))))).)))))-.)))))).	GGACUCUCGGGACUGACCGGUC&GACCGGUAGGUCU-AGGAGUCG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a42_TRINITY_DN22950_c0_g1_5855_TPlot.pdf
TRINITY_DN22950_c0_g1:5979	si_s392	TRINITY_DN22950_c0_g1	5965	5990	5979	-36.30	-25.20	0.694214876033058	12	1-3,5990-5988;4-10,5985-5979;11-20,5975-5966	x-x,5987-5986[BULt];x-x,5978-5976[BULt];21-21,5965-5965[UP3]	.((((((((((...(((((((..(((&)))--)))))))---)))))))))).	GGUCUUCCUUGACUGGAUGUACCAGG&CCU--UACAUUC---CAAGGAAGACG	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s392_TRINITY_DN22950_c0_g1_5979_TPlot.pdf
TRINITY_DN22950_c0_g1:5980	si_s391	TRINITY_DN22950_c0_g1	5966	5991	5980	-37.30	-24.60	0.659517426273459	12	2-4,5990-5988;5-11,5985-5979;12-21,5975-5966	1-1,5991-5991[UP5];x-x,5987-5986[BULt];x-x,5978-5976[BULt]	((((((((((...(((((((..(((.&.)))--)))))))---))))))))))	GUCUUCCUUGACUGGAUGUACCAGGG&GCCU--UACAUUC---CAAGGAAGAC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s391_TRINITY_DN22950_c0_g1_5980_TPlot.pdf
TRINITY_DN22950_c0_g1:6011	si_a718	TRINITY_DN22950_c0_g1	6001	6020	6011	-32.60	-22.60	0.693251533742331	8.5	3-13,6018-6008;15-19,6007-6003	1-2,6020-6019[UP5];14-14,x-x[BULq];20-21,6002-6001[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	GGGUCCG-GUGACGAUUGUCA&AAAUAAUCGUUACUCGGGCAU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN22950_c0_g1_6011_TPlot.pdf
TRINITY_DN22950_c0_g1:6173	si_s94	TRINITY_DN22950_c0_g1	6161	6182	6173	-35.50	-24.50	0.690140845070423	4.5	1-14,6182-6169;17-20,6165-6162	15-16,6168-6166[AILt];21-21,6161-6161[UP3]	.((((...((((((((((((((&))))))))))))))-..)))).	GAGUCGAUAAGCGAAGAAGAAG&CUUCUUCUUCGCUU-CGGAUUG	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN22950_c0_g1_6173_TPlot.pdf
TRINITY_DN22950_c0_g1:6174	si_s93	TRINITY_DN22950_c0_g1	6162	6183	6174	-34.80	-25.60	0.735632183908046	3.5	1-15,6183-6169;18-21,6165-6162	16-17,6168-6166[AILt]	((((...(((((((((((((((&)))))))))))))))-..))))	AGUCGAUAAGCGAAGAAGAAGA&UCUUCUUCUUCGCUU-CGGAUU	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN22950_c0_g1_6174_TPlot.pdf
TRINITY_DN22950_c0_g1:6175	si_s92	TRINITY_DN22950_c0_g1	6162	6184	6175	-34.90	-25.70	0.736389684813754	5.5	2-15,6183-6170;16-19,6167-6164	1-1,6184-6184[UP5];x-x,6169-6168[BULt];20-21,6163-6162[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	AGUCGAUAAGCGAAGAAGAAGAG&UUCUUCUUCUUCGCU--UCGGAU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN22950_c0_g1_6175_TPlot.pdf
TRINITY_DN22950_c0_g1:6176	si_s91	TRINITY_DN22950_c0_g1	6163	6185	6176	-34.70	-27.20	0.783861671469741	4.5	1-16,6185-6170;17-20,6167-6164	x-x,6169-6168[BULt];21-21,6163-6163[UP3]	.((((..((((((((((((((((&))))))))))))))))--)))).	GUCGAUAAGCGAAGAAGAAGAGA&UUUCUUCUUCUUCGCU--UCGGA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN22950_c0_g1_6176_TPlot.pdf
TRINITY_DN22950_c0_g1:6177	si_s90	TRINITY_DN22950_c0_g1	6164	6186	6177	-35.30	-27.20	0.770538243626062	4.5	2-17,6185-6170;18-21,6167-6164	1-1,6186-6186[UP5];x-x,6169-6168[BULt]	((((..((((((((((((((((.&.))))))))))))))))--))))	UCGAUAAGCGAAGAAGAAGAGAU&CUUUCUUCUUCUUCGCU--UCGG	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN22950_c0_g1_6177_TPlot.pdf
TRINITY_DN22950_c0_g1:6178	si_s89	TRINITY_DN22950_c0_g1	6165	6187	6178	-35.30	-26.10	0.739376770538244	6	3-18,6185-6170;19-21,6167-6165	1-2,6187-6186[UP5];x-x,6169-6168[BULt]	(((..((((((((((((((((..&..))))))))))))))))--)))	CGAUAAGCGAAGAAGAAGAGAUG&CCUUUCUUCUUCUUCGCU--UCG	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN22950_c0_g1_6178_TPlot.pdf
TRINITY_DN22950_c0_g1:6179	si_s88	TRINITY_DN22950_c0_g1	6168	6188	6179	-34.80	-26.50	0.761494252873563	4	1-2,6188-6187;4-20,6185-6169	3-3,6186-6186[SIL];21-21,6168-6168[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	UAAGCGAAGAAGAAGAGAUGA&UCCUUUCUUCUUCUUCGCUUC	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN22950_c0_g1_6179_TPlot.pdf
TRINITY_DN22950_c0_g1:6180	si_s87	TRINITY_DN22950_c0_g1	6169	6189	6180	-32.90	-26.60	0.808510638297872	4	2-3,6188-6187;5-21,6185-6169	1-1,6189-6189[UP5];4-4,6186-6186[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	AAGCGAAGAAGAAGAGAUGAC&UUCCUUUCUUCUUCUUCGCUU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN22950_c0_g1_6180_TPlot.pdf
TRINITY_DN22950_c0_g1:6183	si_s84	TRINITY_DN22950_c0_g1	6172	6192	6183	-32.30	-21.30	0.659442724458204	10	5-6,6188-6187;8-21,6185-6172	1-4,6192-6189[UP5];7-7,6186-6186[SIL]	((((((((((((((.((....&....)).))))))))))))))	CGAAGAAGAAGAGAUGACGCU&UCUUUCCUUUCUUCUUCUUCG	2	0.99999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN22950_c0_g1_6183_TPlot.pdf
TRINITY_DN22950_c0_g1:7417	si_a29	TRINITY_DN22950_c0_g1	7407	7426	7417	-31.00	-21.20	0.683870967741935	11.5	2-10,7425-7417;14-20,7414-7408	1-1,7426-7426[UP5];11-13,7416-7415[AILq];21-21,7407-7407[UP3]	.(((((((..-(((((((((.&.)))))))))...))))))).	CGCCGGUCCC-GAGCUGGAGG&UUUUUAGUUCUAAGACCGGUA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN22950_c0_g1_7417_TPlot.pdf
TRINITY_DN22950_c0_g1:7418	si_a28	TRINITY_DN22950_c0_g1	7408	7427	7418	-30.70	-21.00	0.684039087947883	11.5	3-11,7425-7417;15-21,7414-7408	1-2,7427-7426[UP5];12-14,7416-7415[AILq]	(((((((..-(((((((((..&..)))))))))...)))))))	GCCGGUCCC-GAGCUGGAGGA&AUUUUUAGUUCUAAGACCGGU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN22950_c0_g1_7418_TPlot.pdf
TRINITY_DN22950_c0_g1:7502	si_s90	TRINITY_DN22950_c0_g1	7489	7511	7502	-35.30	-23.90	0.677053824362606	8	2-12,7510-7500;13-19,7498-7492;20-21,7490-7489	1-1,7511-7511[UP5];x-x,7499-7499[BULt];x-x,7491-7491[BULt]	((.(((((((.(((((((((((.&.)))))))))))-)))))))-))	CCGGGAGUGACAGGAGAGGAGAU&CUUUCUUCUUCU-UCGCUUC-GG	3	0.999999999962595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN22950_c0_g1_7502_TPlot.pdf
TRINITY_DN22950_c0_g1:795	si_s188	TRINITY_DN22950_c0_g1	784	804	795	-28.20	-18.48	0.65531914893617	9.5	1-4,804-801;7-13,798-792;17-21,788-784	5-6,800-799[SIL];14-16,791-789[SIL]	(((((...(((((((..((((&))))..)))))))...)))))	AUUCCUUUGUGAUCGCAGCUC&GAGUAACGAUUAUUUUGGAAU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN22950_c0_g1_795_TPlot.pdf
TRINITY_DN22950_c0_g1:7966	si_a326	TRINITY_DN22950_c0_g1	7953	7976	7966	-26.20	-17.10	0.652671755725191	11.5	3-9,7974-7968;10-17,7966-7959;18-21,7956-7953	1-2,7976-7975[UP5];x-x,7967-7967[BULt];x-x,7958-7957[BULt]	((((..((((((((.(((((((..&..)))))))-))))))))--))))	GGCAAAGGGAGUGAUGAAAGUCGG&AUGAUUUUU-UUAUUCCU--UGUC	4	0.999999999999009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN22950_c0_g1_7966_TPlot.pdf
TRINITY_DN22962_c0_g1:489	si_s206	TRINITY_DN22962_c0_g1	478	500	489	-33.00	-22.20	0.672727272727273	9	1-7,500-494;8-12,491-487;14-19,485-480	x-x,493-492[BULt];13-13,486-486[SIL];20-21,479-478[UP3]	..((((((.(((((..(((((((&)))))))--))))).))))))..	UGCGAACAGAGCUGCAGUGCAUU&AAUGUAC--CAGUUGUGUUCGAA	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN22962_c0_g1_489_TPlot.pdf
TRINITY_DN22962_c0_g1:490	si_s205	TRINITY_DN22962_c0_g1	479	501	490	-34.90	-23.80	0.681948424068768	8.5	1-8,501-494;9-13,491-487;15-20,485-480	x-x,493-492[BULt];14-14,486-486[SIL];21-21,479-479[UP3]	.((((((.(((((..((((((((&))))))))--))))).)))))).	GCGAACAGAGCUGCAGUGCAUUU&GAAUGUAC--CAGUUGUGUUCGA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN22962_c0_g1_490_TPlot.pdf
TRINITY_DN22962_c0_g3:1335	si_a452	TRINITY_DN22962_c0_g3	1324	1344	1335	-23.00	-15.20	0.660869565217391	13	1-13,1344-1332	14-21,1331-1324[UP3]	........(((((((((((((&)))))))))))))........	GAAGUCGGAGCAGCGGUUGUC&GAUAAUUGUUGUUAUAUAUAA	3	0.999995299209174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN22962_c0_g3_1335_TPlot.pdf
TRINITY_DN22962_c0_g3:1423	si_s252	TRINITY_DN22962_c0_g3	1411	1432	1423	-31.10	-21.00	0.67524115755627	12	1-10,1432-1423;13-19,1419-1413	11-12,1422-1420[AILt];20-21,1412-1411[UP3]	..(((((((...((((((((((&))))))))))-..)))))))..	GUGGUGGUGGUCUCGGGAGGUG&CAUUUCCCGA-UAUAUUACUCA	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN22962_c0_g3_1423_TPlot.pdf
TRINITY_DN22962_c0_g3:1434	si_a58	TRINITY_DN22962_c0_g3	1423	1444	1434	-34.60	-22.90	0.661849710982659	10	1-8,1444-1437;9-12,1435-1432;14-18,1430-1426	x-x,1436-1436[BULt];13-13,1431-1431[SIL];19-21,1425-1423[UP3]	...(((((.((((.((((((((&))))))))-)))).)))))...	UCGGGAGGUGGCGUGGUCGGCU&AGUCGACU-CGCUUCUUUCAAA	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN22962_c0_g3_1434_TPlot.pdf
TRINITY_DN22965_c0_g1:190	si_s813	TRINITY_DN22965_c0_g1	173	199	190	-27.10	-18.60	0.686346863468635	8.5	1-13,199-187;14-19,180-175	x-x,186-181[BULt];20-21,174-173[UP3]	..((((((......(((((((((((((&)))))))))))))------))))))..	CCUUGUUACCAGAUAGAAAAGGUAACG&CGUUACCUUUUCU------UAAUAAUG	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN22965_c0_g1_190_TPlot.pdf
TRINITY_DN22965_c0_g1:196	si_s807	TRINITY_DN22965_c0_g1	185	204	196	-28.90	-19.50	0.674740484429066	7	2-4,203-201;7-19,199-187	1-1,204-204[UP5];5-6,200-200[AILq];20-21,186-185[UP3]	..(((((((((((((.-(((.&.)))..)))))))))))))..	AUAGAAAAGGUAACGU-GAUC&UAUCUUCGUUACCUUUUCUUA	4	0.999999991631285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN22965_c0_g1_196_TPlot.pdf
TRINITY_DN22978_c0_g1:127	si_a643	TRINITY_DN22978_c0_g1	115	136	127	-28.30	-18.80	0.664310954063604	7	2-6,135-131;8-15,129-122;16-21,120-115	1-1,136-136[UP5];7-7,130-130[SIL];x-x,121-121[BULt]	((((((.((((((((.(((((.&.))))).))))))))-))))))	CCCGAUGAUAUUGCUAGAGAAC&UUUUUUGAGUAAUAU-AUCGGG	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN22978_c0_g1_127_TPlot.pdf
TRINITY_DN22979_c0_g1:501	si_s76	TRINITY_DN22979_c0_g1	489	510	501	-23.60	-16.20	0.686440677966102	12	5-12,506-499;14-21,496-489	1-4,510-507[UP5];13-13,498-497[AILt]	((((((((..((((((((....&....))))))))-.))))))))	AAGAAAGGCUGAGAAAGAUACA&AUUUUUUUUCUU-UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN22979_c0_g1_501_TPlot.pdf
TRINITY_DN22979_c0_g1:569	si_s91	TRINITY_DN22979_c0_g1	558	578	569	-34.70	-23.80	0.685878962536023	6	1-15,578-564	16-21,563-558[UP3]	......(((((((((((((((&)))))))))))))))......	AAAUUCGCGAAGAAGAAGAAA&UUUCUUCUUCUUCGCUUCGGA	3	0.999999994099649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN22979_c0_g1_569_TPlot.pdf
TRINITY_DN22980_c0_g1:5033	si_s75	TRINITY_DN22980_c0_g1	5023	5042	5033	-24.00	-16.50	0.6875	6.5	1-10,5042-5033;12-20,5032-5024	11-11,x-x[BULq];21-21,5023-5023[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	UGAAGGGAAA-AAGGAAGAUA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN22980_c0_g1_5033_TPlot.pdf
TRINITY_DN22980_c0_g1:5453	si_s71	TRINITY_DN22980_c0_g1	5439	5462	5453	-25.70	-16.88	0.656809338521401	15	1-10,5462-5453;15-21,5445-5439	11-14,5452-5446[AILt]	(((((((.......((((((((((&))))))))))---....)))))))	AGGAAAGUCAAUCCAGAGUAGGAG&CUUCUAUUUU---UUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN22980_c0_g1_5453_TPlot.pdf
TRINITY_DN22980_c0_g1:5470	si_s78	TRINITY_DN22980_c0_g1	5458	5479	5470	-26.20	-19.20	0.732824427480916	5.5	1-9,5479-5471;11-13,5469-5467;14-21,5465-5458	10-10,5470-5470[SIL];x-x,5466-5466[BULt]	((((((((.(((.(((((((((&))))))))).)))-))))))))	AGGAGAAAUGGAUGGGAAAAAA&UUUUUUUCUUUCC-UUUCUUCU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN22980_c0_g1_5470_TPlot.pdf
TRINITY_DN22980_c0_g1:5486	si_s71	TRINITY_DN22980_c0_g1	5471	5495	5486	-25.70	-18.50	0.719844357976654	7	1-10,5495-5486;12-16,5484-5480;17-21,5475-5471	11-11,5485-5485[SIL];x-x,5479-5476[BULt]	(((((....(((((.((((((((((&)))))))))).)))))----)))))	GGGAAAAAAGGAAAUAAAAUAGAAG&CUUCUAUUUUUUUUCU----UUCCU	3	0.999999999984016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN22980_c0_g1_5486_TPlot.pdf
TRINITY_DN22980_c0_g1:5487	si_a786	TRINITY_DN22980_c0_g1	5472	5496	5487	-26.60	-18.10	0.680451127819549	10	1-10,5496-5487;11-14,5482-5479;16-21,5477-5472	x-x,5486-5483[BULt];15-15,5478-5478[SIL]	((((((.((((....((((((((((&))))))))))----)))).))))))	GGAAAAAAGGAAAUAAAAUAGAAGA&UCUUCUAUUU----UUCUAUUUUCC	3	0.999999999943926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN22980_c0_g1_5487_TPlot.pdf
TRINITY_DN22980_c0_g1:5531	si_a302	TRINITY_DN22980_c0_g1	5520	5540	5531	-28.20	-18.70	0.663120567375887	9	4-12,5537-5529;15-17,5526-5524;20-21,5521-5520	1-3,5540-5538[UP5];13-14,5528-5527[SIL];18-19,5523-5522[SIL]	((..(((..(((((((((...&...)))))))))..)))..))	UAUUUCCUUGCGAAUCUUCUU&AAAAAGAUUCGCUUGGAUUUA	4	0.999975336164604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN22980_c0_g1_5531_TPlot.pdf
TRINITY_DN22980_c0_g2:946	si_a869	TRINITY_DN22980_c0_g2	935	955	946	-24.80	-16.30	0.657258064516129	19	9-19,947-937	1-8,955-948[UP5];20-21,936-935[UP3]	..(((((((((((........&........)))))))))))..	ACGCAGCUGAGUCAGGAUUAU&UUAUUAAAGAUUUAGUUGCAA	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN22980_c0_g2_946_TPlot.pdf
TRINITY_DN22985_c0_g1:2699	si_s483	TRINITY_DN22985_c0_g1	2688	2708	2699	-21.40	-15.40	0.719626168224299	9	1-10,2708-2699;13-18,2696-2691	11-12,2698-2697[SIL];19-21,2690-2688[UP3]	...((((((..((((((((((&))))))))))..))))))...	UGAGUUUGAUGAAAUAUGGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN22985_c0_g1_2699_TPlot.pdf
TRINITY_DN22985_c0_g1:2702	si_s480	TRINITY_DN22985_c0_g1	2691	2711	2702	-25.00	-19.70	0.788	5	2-13,2710-2699;16-21,2696-2691	1-1,2711-2711[UP5];14-15,2698-2697[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GUUUGAUGAAAUAUGGGAUCA&GGAUCCUAUAUUUAUUUAAAU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN22985_c0_g1_2702_TPlot.pdf
TRINITY_DN22985_c0_g1:2703	si_s479	TRINITY_DN22985_c0_g1	2692	2712	2703	-26.40	-18.40	0.696969696969697	6.5	3-14,2710-2699;17-21,2696-2692	1-2,2712-2711[UP5];15-16,2698-2697[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	UUUGAUGAAAUAUGGGAUCAU&CGGAUCCUAUAUUUAUUUAAA	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN22985_c0_g1_2703_TPlot.pdf
TRINITY_DN2298_c0_g1:718	si_s313	TRINITY_DN2298_c0_g1	706	727	718	-30.80	-21.10	0.685064935064935	7.5	3-14,725-714;15-19,712-708	1-2,727-726[UP5];x-x,713-713[BULt];20-21,707-706[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	ACGAUAAUGGAGGACAGAAUGG&AAAUUCUGUCCUUC-UUGUUAC	4	0.999740549237147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN2298_c0_g1_718_TPlot.pdf
TRINITY_DN2298_c0_g1:863	si_s187	TRINITY_DN2298_c0_g1	852	872	863	-29.60	-21.10	0.712837837837838	7.5	1-8,872-865;10-17,863-856;19-19,854-854	9-9,864-864[SIL];18-18,855-855[SIL];20-21,853-852[UP3]	..(.((((((((.((((((((&)))))))).)))))))).)..	UACGAAAGUGGUGGUUACUCG&CGAGUAACGAUUAUUUUGGAA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s187_TRINITY_DN2298_c0_g1_863_TPlot.pdf
TRINITY_DN2298_c0_g1:980	si_a336	TRINITY_DN2298_c0_g1	969	989	980	-31.20	-22.10	0.708333333333333	11	3-14,987-976	1-2,989-988[UP5];15-21,975-969[UP3]	.......((((((((((((..&..)))))))))))).......	UACAACACGGGACAAGGAGGG&UAUUCCUUGUCCCGAAAAUAU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN2298_c0_g1_980_TPlot.pdf
TRINITY_DN2298_c0_g1:981	si_a335	TRINITY_DN2298_c0_g1	970	990	981	-31.10	-22.10	0.710610932475884	12	4-15,987-976	1-3,990-988[UP5];16-21,975-970[UP3]	......((((((((((((...&...))))))))))))......	ACAACACGGGACAAGGAGGGU&UUAUUCCUUGUCCCGAAAAUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN2298_c0_g1_981_TPlot.pdf
TRINITY_DN2298_c0_g1:983	si_a333	TRINITY_DN2298_c0_g1	972	992	983	-30.60	-22.10	0.722222222222222	14	6-17,987-976	1-5,992-988[UP5];18-21,975-972[UP3]	....((((((((((((.....&.....))))))))))))....	AACACGGGACAAGGAGGGUAC&UUUUAUUCCUUGUCCCGAAAA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2298_c0_g1_983_TPlot.pdf
TRINITY_DN22995_c0_g1:1144	si_s89	TRINITY_DN22995_c0_g1	1133	1153	1144	-35.30	-26.80	0.759206798866856	5	2-12,1152-1142;14-21,1140-1133	1-1,1153-1153[UP5];13-13,1141-1141[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UGAGGCGACGAAGAAGGAGGU&CCUUUCUUCUUCUUCGCUUCG	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN22995_c0_g1_1144_TPlot.pdf
TRINITY_DN2299_c0_g1:242	si_s76	TRINITY_DN2299_c0_g1	227	251	242	-23.60	-16.30	0.690677966101695	8.5	1-10,251-242;11-17,240-234;18-21,230-227	x-x,241-241[BULt];x-x,233-231[BULt]	((((...(((((((.((((((((((&))))))))))-)))))))---))))	AAGAACAGAGGAAAUGAAGGAGAAU&AUUUUUUUUC-UUUCCUU---UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2299_c0_g1_242_TPlot.pdf
TRINITY_DN229_c0_g1:384	si_s21	TRINITY_DN229_c0_g1	372	393	384	-27.40	-18.10	0.66058394160584	5	1-9,393-385;11-13,383-381;14-21,379-372	10-10,384-384[SIL];x-x,380-380[BULt]	((((((((.(((.(((((((((&))))))))).)))-))))))))	UUUAGUUGACAAGUAAUAUGGU&ACUAUAUUGAUUG-CAACUAAA	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN229_c0_g1_384_TPlot.pdf
TRINITY_DN229_c0_g1:3950	si_a786	TRINITY_DN229_c0_g1	3933	3959	3950	-26.60	-17.60	0.661654135338346	16	1-6,3959-3954;8-11,3952-3949;12-21,3942-3933	7-7,3953-3953[SIL];x-x,3948-3943[BULt]	((((((((((......((((.((((((&)))))).))))------))))))))))	GGAAAAUAGAACACAAAAGAAAGAGGA&UCUUCUAUUUU------UCUAUUUUCC	2	0.999999998582464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN229_c0_g1_3950_TPlot.pdf
TRINITY_DN229_c0_g1:3951	si_a785	TRINITY_DN229_c0_g1	3934	3960	3951	-25.90	-17.50	0.675675675675676	16	1-7,3960-3954;9-12,3952-3949;13-21,3942-3934	8-8,3953-3953[SIL];x-x,3948-3943[BULt]	(((((((((......((((.(((((((&))))))).))))------)))))))))	GAAAAUAGAACACAAAAGAAAGAGGAG&CUCUUCUAUUUU------UCUAUUUUC	2	0.999999996971295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN229_c0_g1_3951_TPlot.pdf
TRINITY_DN229_c0_g1:487	si_s89	TRINITY_DN229_c0_g1	474	497	487	-35.30	-23.30	0.660056657223796	7.5	1-5,497-493;6-15,491-482;16-19,479-476	x-x,492-492[BULt];x-x,481-480[BULt];20-21,475-474[UP3]	..((((..((((((((((.(((((&)))))-))))))))))--))))..	AAGAGCCAGAAGAAGAAGAAGAGG&CCUUU-CUUCUUCUUC--GCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN229_c0_g1_487_TPlot.pdf
TRINITY_DN229_c0_g1:490	si_s86	TRINITY_DN229_c0_g1	477	500	490	-32.90	-24.70	0.750759878419453	6	2-8,499-493;9-18,491-482;19-21,479-477	1-1,500-500[UP5];x-x,492-492[BULt];x-x,481-480[BULt]	(((..((((((((((.(((((((.&.)))))))-))))))))))--)))	AGCCAGAAGAAGAAGAAGAGGAAG&UUUCCUUU-CUUCUUCUUC--GCU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN229_c0_g1_490_TPlot.pdf
TRINITY_DN229_c0_g1:497	si_s67	TRINITY_DN229_c0_g1	486	508	497	-25.60	-16.80	0.65625	8.5	1-4,508-505;5-9,503-499;11-21,496-486	x-x,504-504[BULt];10-10,498-497[AILt]	(((((((((((..(((((.((((&))))-)))))-.)))))))))))	AAGAAGAAGAGGAAGAAGUUUGU&GCAA-CUUCU-AUUUUUUUUCUU	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN229_c0_g1_497_TPlot.pdf
TRINITY_DN229_c0_g1:532	si_s12	TRINITY_DN229_c0_g1	520	541	532	-22.80	-17.30	0.758771929824561	9	1-12,541-530;14-20,527-521	13-13,529-528[AILt];21-21,520-520[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	CGUCAAUGAAGGUGAUAGUGAG&CUUAUUAUUACU-AUAUUGAUU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN229_c0_g1_532_TPlot.pdf
TRINITY_DN229_c0_g1:729	si_a410	TRINITY_DN229_c0_g1	718	738	729	-17.80	-12.50	0.702247191011236	9	1-15,738-724	16-21,723-718[UP3]	......(((((((((((((((&)))))))))))))))......	UUCAGAUGAAUAUGAACAAGG&UUUUGUUUAUAUUUAAAUAAA	3	0.99999937914353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN229_c0_g1_729_TPlot.pdf
TRINITY_DN229_c0_g1:733	si_a406	TRINITY_DN229_c0_g1	722	742	733	-19.80	-19.30	0.974747474747475	5.5	1-19,742-724	20-21,723-722[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	GAUGAAUAUGAACAAGGCAAU&AUUGUUUUGUUUAUAUUUAAA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN229_c0_g1_733_TPlot.pdf
TRINITY_DN22_c0_g1:3867	si_s81	TRINITY_DN22_c0_g1	3855	3876	3867	-28.90	-20.40	0.705882352941176	7	2-13,3875-3864;14-14,3862-3862;16-20,3860-3856	1-1,3876-3876[UP5];x-x,3863-3863[BULt];15-15,3861-3861[SIL];21-21,3855-3855[UP3]	.(((((.(.((((((((((((.&.))))))))))))-).))))).	UGAAGAUGAAGAGGGAAGAGAU&UUUUCUUUCCUUU-CUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN22_c0_g1_3867_TPlot.pdf
TRINITY_DN23000_c0_g1:410	si_s135	TRINITY_DN23000_c0_g1	398	419	410	-30.50	-20.60	0.675409836065574	6.5	1-13,419-407;18-21,401-398	14-17,406-402[AILt]	((((.....(((((((((((((&)))))))))))))-....))))	UGGGAUACAUGAUUGAUUCGAU&GUUGAAUCAAUCA-AAAACCCA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s135_TRINITY_DN23000_c0_g1_410_TPlot.pdf
TRINITY_DN23000_c0_g1:416	si_s129	TRINITY_DN23000_c0_g1	405	426	416	-29.40	-19.50	0.663265306122449	7	1-7,426-420;8-19,418-407	x-x,419-419[BULt];20-21,406-405[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	CAUGAUUGAUUCGAUCUUUUUU&AGAAGAG-UUGAAUCAAUCAAA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s129_TRINITY_DN23000_c0_g1_416_TPlot.pdf
TRINITY_DN23005_c0_g1:2324	si_s71	TRINITY_DN23005_c0_g1	2313	2331	2324	-25.70	-17.16	0.667704280155642	11.5	1-5,2331-2327;11-20,2323-2314	6-10,2326-2324[AILq];21-21,2313-2313[UP3]	.((((((((((...--(((((&))))).....)))))))))).	UGGAAGGAAAAUCG--AGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN23005_c0_g1_2324_TPlot.pdf
TRINITY_DN23005_c0_g1:838	si_s811	TRINITY_DN23005_c0_g1	827	847	838	-26.40	-17.80	0.674242424242424	12	3-15,845-833	1-2,847-846[UP5];16-21,832-827[UP3]	......(((((((((((((..&..)))))))))))))......	GAUAUCGGGAGAGGUGACGCG&UUCGUUACCUUUUCUUAAUAA	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN23005_c0_g1_838_TPlot.pdf
TRINITY_DN2300_c0_g1:1361	si_a784	TRINITY_DN2300_c0_g1	1350	1374	1361	-24.70	-16.60	0.672064777327935	13	1-8,1374-1367;9-17,1362-1354	x-x,1366-1363[BULt];18-21,1353-1350[UP3]	....(((((((((....((((((((&))))))))----)))))))))....	UCAUUAGAAAAAUAUUGGGAAGAGU&ACUCUUCU----AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2300_c0_g1_1361_TPlot.pdf
TRINITY_DN2300_c0_g1:1362	si_a783	TRINITY_DN2300_c0_g1	1351	1375	1362	-24.70	-16.80	0.680161943319838	13	2-9,1374-1367;10-18,1362-1354	1-1,1375-1375[UP5];x-x,1366-1363[BULt];19-21,1353-1351[UP3]	...(((((((((....((((((((.&.))))))))----)))))))))...	CAUUAGAAAAAUAUUGGGAAGAGUA&AACUCUUCU----AUUUUUCUAUUU	4	0.999999999999273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2300_c0_g1_1362_TPlot.pdf
TRINITY_DN2300_c0_g1:2032	si_a399	TRINITY_DN2300_c0_g1	2021	2041	2032	-22.60	-16.10	0.712389380530973	6.5	1-18,2041-2024	19-21,2023-2021[UP3]	...((((((((((((((((((&))))))))))))))))))...	UAUAAUAAAACAGUUUUAUGU&AUAUAGAAUUGUUUUGUUUAU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2300_c0_g1_2032_TPlot.pdf
TRINITY_DN2300_c0_g1:2035	si_a396	TRINITY_DN2300_c0_g1	2024	2044	2035	-24.70	-16.30	0.659919028340081	8.5	4-21,2041-2024	1-3,2044-2042[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAUAAAACAGUUUUAUGUAUU&AGAAUAUAGAAUUGUUUUGUU	2	0.988388058632615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN2300_c0_g1_2035_TPlot.pdf
TRINITY_DN23018_c0_g3:54	si_a325	TRINITY_DN23018_c0_g3	43	65	54	-25.90	-17.42	0.672586872586873	17	1-7,65-59;13-21,51-43	8-12,58-52[AILt]	(((((((((.......(((((((&)))))))--.....)))))))))	GCAAGGAGUUAUUGGUGGUCAUG&CAUGAUU--UUUUUAUUCCUUGU	4	0.999995461191302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN23018_c0_g3_54_TPlot.pdf
TRINITY_DN2301_c0_g1:133	si_s470	TRINITY_DN2301_c0_g1	122	141	133	-33.70	-23.90	0.70919881305638	8	1-8,141-134;10-16,133-127	9-9,x-x[BULq];17-21,126-122[UP3]	.....(((((((-((((((((&)))))))).))))))).....	AUAAUGGAUCCG-UGGGUAUG&CAUAUCCAACGGAUCCUAUAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s470_TRINITY_DN2301_c0_g1_133_TPlot.pdf
TRINITY_DN2301_c0_g1:134	si_s469	TRINITY_DN2301_c0_g1	123	142	134	-34.50	-23.90	0.692753623188406	8	2-9,141-134;11-17,133-127	1-1,142-142[UP5];10-10,x-x[BULq];18-21,126-123[UP3]	....(((((((-((((((((.&.)))))))).)))))))....	UAAUGGAUCCG-UGGGUAUGU&UCAUAUCCAACGGAUCCUAUA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s469_TRINITY_DN2301_c0_g1_134_TPlot.pdf
TRINITY_DN2301_c0_g1:137	si_s465	TRINITY_DN2301_c0_g1	127	146	137	-36.10	-23.50	0.650969529085873	11	6-13,141-134;15-21,133-127	1-5,146-142[UP5];14-14,x-x[BULq]	(((((((-((((((((.....&.....)))))))).)))))))	GGAUCCG-UGGGUAUGUUGUC&UAUCUCAUAUCCAACGGAUCC	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s465_TRINITY_DN2301_c0_g1_137_TPlot.pdf
TRINITY_DN2301_c0_g1:435	si_s173	TRINITY_DN2301_c0_g1	422	443	435	-39.70	-25.90	0.652392947103274	10	1-5,443-439;9-11,436-434;12-16,432-428;17-20,426-423	6-8,438-437[AILq];x-x,433-433[BULt];x-x,427-427[BULt];21-21,422-422[UP3]	.((((.(((((.(((..-(((((&)))))...)))-)))))-)))).	AUACUGCGGGCGAUCGC-ACCCC&GGGGUAAAGAU-GCCCG-AGUAA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN2301_c0_g1_435_TPlot.pdf
TRINITY_DN2301_c0_g1:782	si_a787	TRINITY_DN2301_c0_g1	768	792	782	-26.30	-18.70	0.711026615969582	7.5	1-4,792-789;5-16,787-776;17-21,772-768	x-x,788-788[BULt];x-x,775-773[BULt]	(((((...((((((((((((.((((&))))-))))))))))))---)))))	UGGAGUACAGUGGAAGAAUAUGAAG&CUUC-UAUUUUUCUAUU---UUCCA	4	0.999997928537389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2301_c0_g1_782_TPlot.pdf
TRINITY_DN2301_c0_g1:783	si_a786	TRINITY_DN2301_c0_g1	769	793	783	-26.60	-18.60	0.699248120300752	7.5	1-5,793-789;6-17,787-776;18-21,772-769	x-x,788-788[BULt];x-x,775-773[BULt]	((((...((((((((((((.(((((&)))))-))))))))))))---))))	GGAGUACAGUGGAAGAAUAUGAAGA&UCUUC-UAUUUUUCUAUU---UUCC	3	0.999999661750396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2301_c0_g1_783_TPlot.pdf
TRINITY_DN23025_c0_g1:16	si_s76	TRINITY_DN23025_c0_g1	5	25	16	-23.60	-18.00	0.76271186440678	6.5	2-18,24-8	1-1,25-25[UP5];19-21,7-5[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAAAAGGGAAAGAAAAGGAAG&AUUUUUUUUCUUUCCUUUCUU	2	0.999999990599764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN23025_c0_g1_16_TPlot.pdf
TRINITY_DN23025_c0_g1:70	si_s79	TRINITY_DN23025_c0_g1	59	79	70	-26.20	-19.90	0.759541984732824	3	2-15,78-65;17-21,63-59	1-1,79-79[UP5];16-16,64-64[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AAGAGAAAGGGAAAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999905096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN23025_c0_g1_70_TPlot.pdf
TRINITY_DN2302_c0_g1:384	si_s698	TRINITY_DN2302_c0_g1	373	393	384	-27.00	-23.80	0.881481481481482	9	5-21,389-373	1-4,393-390[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUCACUGGUGAAUCGACAUGG&AUUAGUCGAUUUAUUAGUGAA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN2302_c0_g1_384_TPlot.pdf
TRINITY_DN2302_c0_g1:387	si_s695	TRINITY_DN2302_c0_g1	376	396	387	-24.70	-18.40	0.744939271255061	14.5	8-21,389-376	1-7,396-390[UP5]	((((((((((((((.......&.......))))))))))))))	ACUGGUGAAUCGACAUGGCGG&UUAAUUAGUCGAUUUAUUAGU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN2302_c0_g1_387_TPlot.pdf
TRINITY_DN23034_c0_g1:13	si_a720	TRINITY_DN23034_c0_g1	1	22	13	-35.30	-24.30	0.688385269121813	7.5	2-14,21-9;15-20,7-2	1-1,22-22[UP5];x-x,8-8[BULt];21-21,1-1[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	UGGUGCCACGAGUAGUGGUUGC&AUAAUCGUUACUCG-GGCAUCU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN23034_c0_g1_13_TPlot.pdf
TRINITY_DN23041_c0_g1:136	si_s549	TRINITY_DN23041_c0_g1	125	145	136	-20.50	-14.80	0.721951219512195	7	2-15,144-131	1-1,145-145[UP5];16-21,130-125[UP3]	......((((((((((((((.&.))))))))))))))......	ACCAAAUAAUUCUAUUUUGAA&AUCAAAAUAGAAUUAAUAUUU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN23041_c0_g1_136_TPlot.pdf
TRINITY_DN23041_c0_g1:139	si_s546	TRINITY_DN23041_c0_g1	128	148	139	-26.20	-17.20	0.656488549618321	6	2-3,147-146;5-18,144-131	1-1,148-148[UP5];4-4,145-145[SIL];19-21,130-128[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	AAAUAAUUCUAUUUUGAACGA&CCGAUCAAAAUAGAAUUAAUA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN23041_c0_g1_139_TPlot.pdf
TRINITY_DN23041_c0_g1:141	si_s544	TRINITY_DN23041_c0_g1	130	152	141	-26.90	-17.78	0.660966542750929	10	1-4,152-149;7-20,144-131	5-6,148-145[AILt];21-21,130-130[UP3]	.((((((((((((((....((((&))))--..)))))))))))))).	AUAAUUCUAUUUUGAACGAGGGU&AUCC--GAUCAAAAUAGAAUUAA	0	0.0319962396459906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN23041_c0_g1_141_TPlot.pdf
TRINITY_DN23041_c0_g3:1083	si_a646	TRINITY_DN23041_c0_g3	1073	1092	1083	-29.40	-22.00	0.748299319727891	6	3-13,1090-1080;15-19,1079-1075	1-2,1092-1091[UP5];14-14,x-x[BULq];20-21,1074-1073[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	UGUCCCG-UAUAUUACUCACA&UUUGAGUAAUAUAUCGGGAAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN23041_c0_g3_1083_TPlot.pdf
TRINITY_DN23041_c0_g3:69	si_a719	TRINITY_DN23041_c0_g3	58	78	69	-34.60	-22.60	0.653179190751445	13	6-8,73-71;10-20,69-59	1-5,78-74[UP5];9-9,70-70[SIL];21-21,58-58[UP3]	.(((((((((((.(((.....&.....))).))))))))))).	UAUGCCCGAGUGUCGACGAAA&AAUAAUCGUUACUCGGGCAUC	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN23041_c0_g3_69_TPlot.pdf
TRINITY_DN2304_c0_g1:1893	si_a577	TRINITY_DN2304_c0_g1	1882	1902	1893	-30.10	-19.70	0.654485049833887	6	2-12,1901-1891;15-19,1888-1884	1-1,1902-1902[UP5];13-14,1890-1889[SIL];20-21,1883-1882[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	AAUCUUGGCACAAACAUAUGC&UCGUAUGUUUGUAACAAGAAG	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a577_TRINITY_DN2304_c0_g1_1893_TPlot.pdf
TRINITY_DN2304_c0_g1:1895	si_a575	TRINITY_DN2304_c0_g1	1884	1904	1895	-28.60	-19.50	0.681818181818182	8	4-14,1901-1891;17-21,1888-1884	1-3,1904-1902[UP5];15-16,1890-1889[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	UCUUGGCACAAACAUAUGCAG&AAUCGUAUGUUUGUAACAAGA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN2304_c0_g1_1895_TPlot.pdf
TRINITY_DN23054_c0_g1:328	si_a171	TRINITY_DN23054_c0_g1	317	337	328	-32.10	-20.90	0.651090342679128	6.5	1-9,337-329;11-15,327-323;17-20,321-318	10-10,328-328[SIL];16-16,322-322[SIL];21-21,317-317[UP3]	.((((.(((((.(((((((((&))))))))).))))).)))).	CAUUAGUUAGGGGGGUGGAUA&UAUUCACCCGUCUAGAUAAUA	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN23054_c0_g1_328_TPlot.pdf
TRINITY_DN23069_c0_g2:1393	si_s73	TRINITY_DN23069_c0_g2	1382	1401	1393	-24.00	-15.80	0.658333333333333	8.5	1-8,1401-1394;11-13,1392-1390;15-21,1388-1382	9-10,1393-1393[AILq];14-14,1389-1389[SIL]	(((((((.(((.-((((((((&))))))))..))).)))))))	GAAGGAAUGGAU-GAAAUGGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN23069_c0_g2_1393_TPlot.pdf
TRINITY_DN23069_c0_g2:1484	si_s80	TRINITY_DN23069_c0_g2	1472	1500	1484	-28.20	-18.70	0.663120567375887	20.5	1-8,1500-1493;9-10,1485-1484;11-21,1482-1472	x-x,1492-1486[BULt];x-x,1483-1483[BULt]	(((((((((((.((.......((((((((&))))))))-------))-)))))))))))	GAAGAAGAGGGCGAAUUCGACGAGGAAGA&UUUUUCUU-------UC-CUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN23069_c0_g2_1484_TPlot.pdf
TRINITY_DN23069_c0_g2:1494	si_s93	TRINITY_DN23069_c0_g2	1485	1503	1494	-34.80	-23.10	0.663793103448276	4.5	1-12,1503-1492;15-21,1491-1485	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AAUUCGA--CGAGGAAGAGGA&UCUUCUUCUUCGCUUCGGAUU	4	0.99999999999769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN23069_c0_g2_1494_TPlot.pdf
TRINITY_DN23069_c0_g2:1497	si_s90	TRINITY_DN23069_c0_g2	1488	1506	1497	-35.30	-23.70	0.671388101983003	5.5	1-15,1506-1492;18-21,1491-1488	16-17,x-x[BULq]	((((--(((((((((((((((&)))))))))))))))..))))	UCGA--CGAGGAAGAGGAAGG&CUUUCUUCUUCUUCGCUUCGG	2	0.999999963949566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN23069_c0_g2_1497_TPlot.pdf
TRINITY_DN23069_c0_g2:1498	si_s89	TRINITY_DN23069_c0_g2	1483	1507	1498	-35.30	-23.60	0.668555240793201	7.5	2-16,1506-1492;17-17,1490-1490;18-21,1486-1483	1-1,1507-1507[UP5];x-x,1491-1491[BULt];x-x,1489-1487[BULt]	((((...(.(((((((((((((((.&.)))))))))))))))-)---))))	CGAAUUCGACGAGGAAGAGGAAGGU&CCUUUCUUCUUCUUCG-C---UUCG	3	0.999999999999917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN23069_c0_g2_1498_TPlot.pdf
TRINITY_DN23069_c0_g2:1500	si_s87	TRINITY_DN23069_c0_g2	1489	1510	1500	-32.90	-23.20	0.70516717325228	8.5	2-3,1509-1508;4-18,1506-1492	1-1,1510-1510[UP5];x-x,1507-1507[BULt];19-21,1491-1489[UP3]	...(((((((((((((((.((.&.))-)))))))))))))))...	CGACGAGGAAGAGGAAGGUGAU&UUC-CUUUCUUCUUCUUCGCUU	3	0.999999999692903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN23069_c0_g2_1500_TPlot.pdf
TRINITY_DN23069_c0_g2:1501	si_a326	TRINITY_DN23069_c0_g2	1490	1510	1501	-26.20	-19.00	0.725190839694656	8.5	1-2,1510-1509;4-11,1507-1500;13-21,1498-1490	3-3,1508-1508[SIL];12-12,1499-1499[SIL]	(((((((((.((((((((.((&)).)))))))).)))))))))	GACGAGGAAGAGGAAGGUGAU&AUGAUUUUUUUAUUCCUUGUC	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN23069_c0_g2_1501_TPlot.pdf
TRINITY_DN23069_c0_g2:1502	si_a325	TRINITY_DN23069_c0_g2	1491	1511	1502	-25.90	-18.60	0.718146718146718	7.5	1-3,1511-1509;5-12,1507-1500;14-21,1498-1491	4-4,1508-1508[SIL];13-13,1499-1499[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	ACGAGGAAGAGGAAGGUGAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN23069_c0_g2_1502_TPlot.pdf
TRINITY_DN23069_c0_g2:1503	si_s84	TRINITY_DN23069_c0_g2	1492	1514	1503	-32.30	-24.70	0.764705882352941	8	1-4,1514-1511;5-6,1509-1508;7-21,1506-1492	x-x,1510-1510[BULt];x-x,1507-1507[BULt]	(((((((((((((((.((.((((&))))-))-)))))))))))))))	CGAGGAAGAGGAAGGUGAUGAGG&UCUU-UC-CUUUCUUCUUCUUCG	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN23069_c0_g2_1503_TPlot.pdf
TRINITY_DN23069_c0_g2:1504	si_s83	TRINITY_DN23069_c0_g2	1493	1515	1504	-30.90	-22.80	0.737864077669903	8.5	1-5,1515-1511;6-7,1509-1508;8-21,1506-1493	x-x,1510-1510[BULt];x-x,1507-1507[BULt]	((((((((((((((.((.(((((&)))))-))-))))))))))))))	GAGGAAGAGGAAGGUGAUGAGGG&UUCUU-UC-CUUUCUUCUUCUUC	3	0.999999968333721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN23069_c0_g2_1504_TPlot.pdf
TRINITY_DN23069_c0_g2:1507	si_s808	TRINITY_DN23069_c0_g2	1495	1516	1507	-28.60	-20.30	0.70979020979021	8.5	2-15,1515-1502;16-19,1500-1497	1-1,1516-1516[UP5];x-x,1501-1501[BULt];20-21,1496-1495[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	GGAAGAGGAAGGUGAUGAGGGC&AUCUUCGUUACCUUU-UCUUAA	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN23069_c0_g2_1507_TPlot.pdf
TRINITY_DN23069_c0_g2:1508	si_s807	TRINITY_DN23069_c0_g2	1496	1517	1508	-28.90	-20.30	0.70242214532872	9.5	3-16,1515-1502;17-20,1500-1497	1-2,1517-1516[UP5];x-x,1501-1501[BULt];21-21,1496-1496[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	GAAGAGGAAGGUGAUGAGGGCG&UAUCUUCGUUACCUUU-UCUUA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN23069_c0_g2_1508_TPlot.pdf
TRINITY_DN2306_c0_g1:1970	si_a20	TRINITY_DN2306_c0_g1	1961	1979	1970	-26.70	-17.60	0.659176029962547	6.5	1-11,1979-1969;15-21,1967-1961	12-14,1968-1968[AILq]	(((((((.--(((((((((((&)))))))))))...)))))))	UGGAGCUC--AAUGAAUAGGU&GCCUAUUUAUUUUUAGUUCUA	4	0.999999965227629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2306_c0_g1_1970_TPlot.pdf
TRINITY_DN23072_c0_g1:1001	si_a210	TRINITY_DN23072_c0_g1	990	1011	1001	-26.70	-18.50	0.692883895131086	10	3-9,1009-1003;12-21,999-990	1-2,1011-1010[UP5];10-11,1002-1000[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	UGAGUUUGGUACUGUCGAUUAU&UAAAUCGAC-UAAUUAAACUCA	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a210_TRINITY_DN23072_c0_g1_1001_TPlot.pdf
TRINITY_DN23072_c1_g1:1501	si_s3	TRINITY_DN23072_c1_g1	1490	1510	1501	-21.20	-13.80	0.650943396226415	8.5	1-15,1510-1496	16-21,1495-1490[UP3]	......(((((((((((((((&)))))))))))))))......	AUCAAAAGUAAGUAGUGUAAA&UUUAUAUUACUUAUUAUUACU	2	0.999361043358898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN23072_c1_g1_1501_TPlot.pdf
TRINITY_DN23081_c0_g1:1204	si_a459	TRINITY_DN23081_c0_g1	1193	1213	1204	-23.20	-16.60	0.71551724137931	5	1-7,1213-1207;9-17,1205-1197;19-20,1195-1194	8-8,1206-1206[SIL];18-18,1196-1196[SIL];21-21,1193-1193[UP3]	.((.(((((((((.(((((((&))))))).))))))))).)).	GUAGAUAUUAUAUUUGACAAC&GUUGUUAUAUAUAAUAUGUAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN23081_c0_g1_1204_TPlot.pdf
TRINITY_DN23081_c0_g1:1205	si_a458	TRINITY_DN23081_c0_g1	1194	1214	1205	-23.80	-16.60	0.697478991596639	5	2-8,1213-1207;10-18,1205-1197;20-21,1195-1194	1-1,1214-1214[UP5];9-9,1206-1206[SIL];19-19,1196-1196[SIL]	((.(((((((((.(((((((.&.))))))).))))))))).))	UAGAUAUUAUAUUUGACAACU&UGUUGUUAUAUAUAAUAUGUA	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN23081_c0_g1_1205_TPlot.pdf
TRINITY_DN23081_c0_g1:1207	si_a456	TRINITY_DN23081_c0_g1	1196	1216	1207	-22.80	-15.20	0.666666666666667	9	4-10,1213-1207;12-20,1205-1197	1-3,1216-1214[UP5];11-11,1206-1206[SIL];21-21,1196-1196[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	GAUAUUAUAUUUGACAACUUA&AUUGUUGUUAUAUAUAAUAUG	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN23081_c0_g1_1207_TPlot.pdf
TRINITY_DN23081_c0_g1:1404	si_s446	TRINITY_DN23081_c0_g1	1393	1413	1404	-21.30	-14.60	0.685446009389671	8	1-3,1413-1411;6-18,1408-1396	4-5,1410-1409[SIL];19-21,1395-1393[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	AUUUUGUUGUUAUAUGGUAUA&UAUUAUAUAUAACAACAAUUA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN23081_c0_g1_1404_TPlot.pdf
TRINITY_DN23081_c0_g1:353	si_a23	TRINITY_DN23081_c0_g1	342	363	353	-22.80	-15.20	0.666666666666667	13.5	5-8,359-356;10-21,353-342	1-4,363-360[UP5];9-9,355-354[AILt]	((((((((((((..((((....&....))))-.))))))))))))	UCUUAGAGCUAAUUGAUGUUGA&UAUUUAUU-UUUAGUUCUAAGA	2	0.999267294216212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN23081_c0_g1_353_TPlot.pdf
TRINITY_DN2308_c0_g1:1658	si_a649	TRINITY_DN2308_c0_g1	1646	1668	1658	-32.90	-22.80	0.693009118541034	7	1-4,1668-1665;6-15,1662-1653;16-20,1651-1647	5-5,1664-1663[AILt];x-x,1652-1652[BULt];21-21,1646-1646[UP3]	.(((((.((((((((((..((((&))))-.))))))))))-))))).	UCAUUUACCCGAUGUAUGGACUC&GAGU-AAUAUAUCGGG-AAAUGC	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a649_TRINITY_DN2308_c0_g1_1658_TPlot.pdf
TRINITY_DN2308_c0_g1:1662	si_a645	TRINITY_DN2308_c0_g1	1651	1672	1662	-29.40	-22.60	0.768707482993197	8.5	1-8,1672-1665;10-19,1662-1653	9-9,1664-1663[AILt];20-21,1652-1651[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	UACCCGAUGUAUGGACUCGGAA&UUUUGAGU-AAUAUAUCGGGAA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN2308_c0_g1_1662_TPlot.pdf
TRINITY_DN2308_c0_g1:1857	si_s634	TRINITY_DN2308_c0_g1	1846	1868	1857	-38.30	-27.68	0.722715404699739	12	1-7,1868-1862;10-21,1857-1846	8-9,1861-1858[AILt]	((((((((((((....(((((((&)))))))--..))))))))))))	GGGGGCGAAUGCAGUCGCGAGAA&UUUUCGU--AGGCGUUUGCCCUC	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN2308_c0_g1_1857_TPlot.pdf
TRINITY_DN2308_c0_g1:1858	si_s633	TRINITY_DN2308_c0_g1	1847	1869	1858	-37.90	-25.58	0.674934036939314	12.5	2-8,1868-1862;11-21,1857-1847	1-1,1869-1869[UP5];9-10,1861-1858[AILt]	(((((((((((....(((((((.&.)))))))--..)))))))))))	GGGGCGAAUGCAGUCGCGAGAAA&CUUUUCGU--AGGCGUUUGCCCU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2308_c0_g1_1858_TPlot.pdf
TRINITY_DN2308_c0_g1:1876	si_a303	TRINITY_DN2308_c0_g1	1866	1885	1876	-28.40	-18.70	0.658450704225352	12	5-12,1881-1874;14-19,1873-1868	1-4,1885-1882[UP5];13-13,x-x[BULq];20-21,1867-1866[UP3]	..((((((-((((((((....&....)))))))).))))))..	GAAAAUCC-GGCGAGUCGGGA&AAAAGAUUCGCUUGGAUUUAU	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN2308_c0_g1_1876_TPlot.pdf
TRINITY_DN2308_c0_g1:1877	si_a302	TRINITY_DN2308_c0_g1	1867	1886	1877	-28.20	-18.70	0.663120567375887	12.5	6-13,1881-1874;15-20,1873-1868	1-5,1886-1882[UP5];14-14,x-x[BULq];21-21,1867-1867[UP3]	.((((((-((((((((.....&.....)))))))).)))))).	AAAAUCC-GGCGAGUCGGGAA&AAAAAGAUUCGCUUGGAUUUA	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN2308_c0_g1_1877_TPlot.pdf
TRINITY_DN2308_c0_g1:2186	si_s312	TRINITY_DN2308_c0_g1	2172	2195	2186	-29.00	-19.30	0.66551724137931	7.5	1-7,2195-2189;9-13,2187-2183;14-21,2179-2172	8-8,2188-2188[SIL];x-x,2182-2180[BULt]	((((((((...(((((.(((((((&))))))).)))))---))))))))	UGACGGGAAAGAGGACCGAGUUUU&AAAAUUCUGUCCU---UCUUGUUA	3	0.999999999987961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2308_c0_g1_2186_TPlot.pdf
TRINITY_DN2309_c0_g1:5643	si_a878	TRINITY_DN2309_c0_g1	5632	5652	5643	-26.70	-19.20	0.719101123595506	6.5	2-16,5651-5637	1-1,5652-5652[UP5];17-21,5636-5632[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACACUUUGGUUGCAACUAAAA&AUUUAGUUGCAAUCAAUAUAG	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN2309_c0_g1_5643_TPlot.pdf
TRINITY_DN2309_c0_g2:1385	si_s815	TRINITY_DN2309_c0_g2	1374	1395	1385	-25.00	-16.70	0.668	9.5	1-7,1395-1389;8-19,1387-1376	x-x,1388-1388[BULt];20-21,1375-1374[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	CGUAUUGUUGGGAAGGAGGUGG&UUACCUU-UUCUUAAUAAUGAA	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN2309_c0_g2_1385_TPlot.pdf
TRINITY_DN2309_c0_g2:1630	si_a665	TRINITY_DN2309_c0_g2	1619	1642	1630	-29.60	-20.00	0.675675675675676	14.5	3-8,1640-1635;9-18,1631-1622	1-2,1642-1641[UP5];x-x,1634-1632[BULt];19-21,1621-1619[UP3]	...((((((((((...((((((..&..))))))---))))))))))...	CCCAAGGAGUCGAAUAUGGGCAAC&AAUGCCUA---UUGAUUCCUUAUU	2	0.987331012997792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN2309_c0_g2_1630_TPlot.pdf
TRINITY_DN2309_c0_g2:1631	si_a664	TRINITY_DN2309_c0_g2	1620	1643	1631	-29.60	-20.00	0.675675675675676	15.5	4-9,1640-1635;10-19,1631-1622	1-3,1643-1641[UP5];x-x,1634-1632[BULt];20-21,1621-1620[UP3]	..((((((((((...((((((...&...))))))---))))))))))..	CCAAGGAGUCGAAUAUGGGCAACG&AAAUGCCUA---UUGAUUCCUUAU	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN2309_c0_g2_1631_TPlot.pdf
TRINITY_DN2309_c0_g2:1773	si_s803	TRINITY_DN2309_c0_g2	1762	1782	1773	-26.00	-17.60	0.676923076923077	10	3-7,1780-1776;9-20,1774-1763	1-2,1782-1781[UP5];8-8,1775-1775[SIL];21-21,1762-1762[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UAGGGGUAACGAAAGUGAGGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999653242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2309_c0_g2_1773_TPlot.pdf
TRINITY_DN230_c0_g1:1658	si_s49	TRINITY_DN230_c0_g1	1646	1667	1658	-29.30	-19.20	0.655290102389078	9	4-5,1664-1663;7-18,1661-1650;19-21,1648-1646	1-3,1667-1665[UP5];6-6,1662-1662[SIL];x-x,1649-1649[BULt]	(((.((((((((((((.((...&...)).))))))))))))-)))	UGCAUGGCUUGAAAUCGAAAAU&UAAUUGGAUUUCAAGUUA-GCA	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN230_c0_g1_1658_TPlot.pdf
TRINITY_DN230_c0_g1:290	si_s795	TRINITY_DN230_c0_g1	279	299	290	-30.30	-20.28	0.669306930693069	7.5	3-13,297-287;17-21,283-279	1-2,299-298[UP5];14-16,286-284[SIL]	(((((...(((((((((((..&..)))))))))))...)))))	ACGAAUUGGAAGUACGAGCCU&AAGCUCGUAUUUUAUCUUCGU	2	0.997326500109187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN230_c0_g1_290_TPlot.pdf
TRINITY_DN230_c0_g1:296	si_s789	TRINITY_DN230_c0_g1	285	305	296	-26.20	-18.20	0.694656488549618	12	5-7,301-299;9-19,297-287	1-4,305-302[UP5];8-8,298-298[SIL];20-21,286-285[UP3]	..(((((((((((.(((....&....))).)))))))))))..	UGGAAGUACGAGCCUGUGGAC&UAAAACAAGCUCGUAUUUUAU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN230_c0_g1_296_TPlot.pdf
TRINITY_DN2310_c0_g1:727	si_s552	TRINITY_DN2310_c0_g1	716	736	727	-21.10	-16.50	0.781990521327014	10.5	5-20,732-717	1-4,736-733[UP5];21-21,716-716[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGAAAGUAUUGAUUCUGAUCA&AAAAUAGAAUUAAUAUUUUCG	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN2310_c0_g1_727_TPlot.pdf
TRINITY_DN2310_c0_g1:728	si_s551	TRINITY_DN2310_c0_g1	717	737	728	-21.30	-15.80	0.741784037558685	11.5	6-21,732-717	1-5,737-733[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAAGUAUUGAUUCUGAUCAU&CAAAAUAGAAUUAAUAUUUUC	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN2310_c0_g1_728_TPlot.pdf
TRINITY_DN23117_c0_g1:609	si_a755	TRINITY_DN23117_c0_g1	598	622	609	-34.90	-23.80	0.681948424068768	15	1-6,622-617;7-17,612-602	x-x,616-613[BULt];18-21,601-598[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	AUCCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN23117_c0_g1_609_TPlot.pdf
TRINITY_DN23117_c0_g1:611	si_a753	TRINITY_DN23117_c0_g1	600	624	611	-33.10	-24.80	0.749244712990937	14	2-8,623-617;9-19,612-602	1-1,624-624[UP5];x-x,616-613[BULt];20-21,601-600[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	CCGGACCCAAGGGUCCGGGGUUCAA&AUGAACCU----CCUUUGGGUUUUU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN23117_c0_g1_611_TPlot.pdf
TRINITY_DN23117_c0_g1:612	si_a752	TRINITY_DN23117_c0_g1	601	625	612	-34.80	-24.80	0.71264367816092	15	3-9,623-617;10-20,612-602	1-2,625-624[UP5];x-x,616-613[BULt];21-21,601-601[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	CGGACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN23117_c0_g1_612_TPlot.pdf
TRINITY_DN2311_c0_g1:1971	si_a785	TRINITY_DN2311_c0_g1	1956	1980	1971	-25.90	-18.00	0.694980694980695	8	1-6,1980-1975;8-15,1973-1966;16-21,1961-1956	7-7,1974-1974[SIL];x-x,1965-1962[BULt]	((((((....((((((((.((((((&)))))).))))))))----))))))	GAGAGUCCAGAGAAAGAUUGAAGAG&CUCUUCUAUUUUUCU----AUUUUC	3	0.999999999845704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2311_c0_g1_1971_TPlot.pdf
TRINITY_DN2311_c0_g1:1972	si_a784	TRINITY_DN2311_c0_g1	1961	1981	1972	-24.70	-16.10	0.651821862348178	9	2-7,1980-1975;9-16,1973-1966	1-1,1981-1981[UP5];8-8,1974-1974[SIL];17-21,1965-1961[UP3]	.....((((((((.((((((.&.)))))).)))))))).....	UCCAGAGAAAGAUUGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2311_c0_g1_1972_TPlot.pdf
TRINITY_DN2311_c0_g1:1981	si_a535	TRINITY_DN2311_c0_g1	1970	1990	1981	-39.60	-28.20	0.712121212121212	6	2-11,1989-1980;14-21,1977-1970	1-1,1990-1990[UP5];12-13,1979-1978[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AGAUUGAAGAGGUUGCUCGCA&CGCGAGCGAUCGGUUCAAUCU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN2311_c0_g1_1981_TPlot.pdf
TRINITY_DN2312_c0_g1:273	si_s77	TRINITY_DN2312_c0_g1	262	282	273	-25.50	-20.10	0.788235294117647	7.5	3-18,280-265	1-2,282-281[UP5];19-21,264-262[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUCGAAGGGAGAGAAAAAACG&UUUUUUUUCUUUCCUUUCUUC	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2312_c0_g1_273_TPlot.pdf
TRINITY_DN2312_c0_g1:274	si_s76	TRINITY_DN2312_c0_g1	263	283	274	-23.60	-20.10	0.851694915254237	8.5	4-19,280-265	1-3,283-281[UP5];20-21,264-263[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCGAAGGGAGAGAAAAAACGA&AUUUUUUUUCUUUCCUUUCUU	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2312_c0_g1_274_TPlot.pdf
TRINITY_DN2312_c0_g1:275	si_s75	TRINITY_DN2312_c0_g1	264	284	275	-24.00	-20.10	0.8375	9	5-20,280-265	1-4,284-281[UP5];21-21,264-264[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAAGGGAGAGAAAAAACGAU&UAUUUUUUUUCUUUCCUUUCU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2312_c0_g1_275_TPlot.pdf
TRINITY_DN2312_c0_g1:276	si_s74	TRINITY_DN2312_c0_g1	265	285	276	-25.00	-19.80	0.792	10	6-21,280-265	1-5,285-281[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGGGAGAGAAAAAACGAUU&CUAUUUUUUUUCUUUCCUUUC	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2312_c0_g1_276_TPlot.pdf
TRINITY_DN2312_c0_g1:277	si_s73	TRINITY_DN2312_c0_g1	266	286	277	-24.00	-16.50	0.6875	12	7-21,280-266	1-6,286-281[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGGAGAGAAAAAACGAUUU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2312_c0_g1_277_TPlot.pdf
TRINITY_DN2312_c0_g1:279	si_s71	TRINITY_DN2312_c0_g1	268	290	279	-25.70	-17.70	0.688715953307393	8	1-4,290-287;6-8,284-282;9-21,280-268	5-5,286-285[AILt];x-x,281-281[BULt]	(((((((((((((.(((..((((&))))-.)))-)))))))))))))	GGGAGAGAAAAAACGAUUUGAAG&CUUC-UAUU-UUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2312_c0_g1_279_TPlot.pdf
TRINITY_DN2312_c0_g1:282	si_s69	TRINITY_DN2312_c0_g1	270	292	282	-23.40	-16.00	0.683760683760684	7.5	1-6,292-287;8-10,284-282;11-21,280-270	7-7,286-285[AILt];x-x,281-281[BULt]	(((((((((((.(((..((((((&))))))-.)))-)))))))))))	GAGAGAAAAAACGAUUUGAAGUU&AACUUC-UAUU-UUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2312_c0_g1_282_TPlot.pdf
TRINITY_DN2312_c0_g1:328	si_s457	TRINITY_DN2312_c0_g1	317	336	328	-30.00	-19.50	0.65	5	1-8,336-329;10-15,328-323;18-21,320-317	9-9,x-x[BULq];16-17,322-321[SIL]	((((..((((((-((((((((&)))))))).))))))..))))	UGGGCUUGGGAU-AUUGUUGU&ACAACAAUUAUCUCAUAUCCA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN2312_c0_g1_328_TPlot.pdf
TRINITY_DN23130_c0_g1:1048	si_s14	TRINITY_DN23130_c0_g1	1036	1057	1048	-25.30	-18.00	0.711462450592885	4.5	1-15,1057-1043;17-21,1040-1036	16-16,1042-1041[AILt]	(((((..(((((((((((((((&)))))))))))))))-.)))))	GUAAUAAAAUAUAGUAGUAGUA&UAUUAUUACUAUAUU-GAUUGC	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN23130_c0_g1_1048_TPlot.pdf
TRINITY_DN23130_c0_g1:1054	si_s8	TRINITY_DN23130_c0_g1	1043	1063	1054	-21.30	-15.10	0.708920187793427	12	6-21,1058-1043	1-5,1063-1059[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUAUAGUAGUAGUAGAUCCU&AUUACUUAUUAUUACUAUAUU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN23130_c0_g1_1054_TPlot.pdf
TRINITY_DN23130_c0_g1:466	si_s83	TRINITY_DN23130_c0_g1	455	476	466	-30.90	-22.00	0.711974110032362	8.5	2-7,475-470;8-19,468-457	1-1,476-476[UP5];x-x,469-469[BULt];20-21,456-455[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	CUAGAAGGAGGAAGAGGAGGAG&UUCUUUC-CUUUCUUCUUCUUC	3	0.999999999998377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN23130_c0_g1_466_TPlot.pdf
TRINITY_DN23130_c0_g1:469	si_s69	TRINITY_DN23130_c0_g1	458	478	469	-23.40	-17.30	0.739316239316239	9.5	3-7,476-472;9-21,470-458	1-2,478-477[UP5];8-8,471-471[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAGGAGGAAGAGGAGGAGAU&AACUUCUAUUUUUUUUCUUUC	2	0.999996856518178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN23130_c0_g1_469_TPlot.pdf
TRINITY_DN23130_c0_g1:475	si_s84	TRINITY_DN23130_c0_g1	464	485	475	-32.30	-22.10	0.68421052631579	11.5	4-7,482-479;8-20,477-465	1-3,485-483[UP5];x-x,478-478[BULt];21-21,464-464[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	GGAAGAGGAGGAGAUGGGAUUG&UCUUUCC-UUUCUUCUUCUUCG	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN23130_c0_g1_475_TPlot.pdf
TRINITY_DN23130_c0_g1:488	si_a875	TRINITY_DN23130_c0_g1	477	497	488	-27.10	-18.30	0.675276752767528	10	3-17,495-481	1-2,497-496[UP5];18-21,480-477[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUGGGAUUGUAAUUGAAUCGG&AAGAUUUAGUUGCAAUCAAUA	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN23130_c0_g1_488_TPlot.pdf
TRINITY_DN23130_c0_g1:562	si_s312	TRINITY_DN23130_c0_g1	551	572	562	-29.00	-20.80	0.717241379310345	13	5-8,568-565;9-20,563-552	1-4,572-569[UP5];x-x,564-564[BULt];21-21,551-551[UP3]	.((((((((((((.((((....&....))))-)))))))))))).	GGACAAGGAGGGCAAGGAGGAA&AAAAUUCU-GUCCUUCUUGUUA	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN23130_c0_g1_562_TPlot.pdf
TRINITY_DN23130_c0_g1:563	si_s311	TRINITY_DN23130_c0_g1	552	573	563	-30.60	-20.40	0.666666666666667	14	6-9,568-565;10-21,563-552	1-5,573-569[UP5];x-x,564-564[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	GACAAGGAGGGCAAGGAGGAAU&GAAAAUUCU-GUCCUUCUUGUU	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN23130_c0_g1_563_TPlot.pdf
TRINITY_DN23130_c0_g1:567	si_s76	TRINITY_DN23130_c0_g1	555	576	567	-23.60	-16.00	0.677966101694915	12	5-13,572-564;14-21,562-555	1-4,576-573[UP5];x-x,563-563[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AAGGAGGGCAAGGAGGAAUUGG&AUUUUUUUUCUUU-CCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN23130_c0_g1_567_TPlot.pdf
TRINITY_DN23130_c0_g1:606	si_s76	TRINITY_DN23130_c0_g1	595	615	606	-23.60	-17.00	0.720338983050847	5.5	1-14,615-602;17-21,599-595	15-16,601-600[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	AAGAAUAGGAAGAGGAAAAGU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN23130_c0_g1_606_TPlot.pdf
TRINITY_DN23130_c0_g1:608	si_s74	TRINITY_DN23130_c0_g1	597	617	608	-25.00	-19.20	0.768	5.5	1-16,617-602;19-21,599-597	17-18,601-600[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	GAAUAGGAAGAGGAAAAGUAG&CUAUUUUUUUUCUUUCCUUUC	2	0.997009610118473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN23130_c0_g1_608_TPlot.pdf
TRINITY_DN23130_c0_g1:609	si_a789	TRINITY_DN23130_c0_g1	599	618	609	-24.80	-18.00	0.725806451612903	7.5	1-11,618-608;13-18,607-602	12-12,x-x[BULq];19-21,601-599[UP3]	...((((((-(((((((((((&))))))))))).))))))...	AUAGGAAGA-GGAAAAGUAGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN23130_c0_g1_609_TPlot.pdf
TRINITY_DN23130_c0_g1:610	si_a788	TRINITY_DN23130_c0_g1	600	619	610	-24.80	-18.70	0.754032258064516	5.5	1-12,619-608;14-19,607-602	13-13,x-x[BULq];20-21,601-600[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	UAGGAAGA-GGAAAAGUAGAA&UUCUAUUUUUCUAUUUUCCAA	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN23130_c0_g1_610_TPlot.pdf
TRINITY_DN23130_c0_g1:653	si_s79	TRINITY_DN23130_c0_g1	642	662	653	-26.20	-17.40	0.66412213740458	9.5	3-16,660-647	1-2,662-661[UP5];17-21,646-642[UP3]	.....((((((((((((((..&..)))))))))))))).....	GCAAUGGAAGGAAAGGAAAUA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN23130_c0_g1_653_TPlot.pdf
TRINITY_DN23136_c0_g1:1337	si_s67	TRINITY_DN23136_c0_g1	1326	1346	1337	-25.60	-17.50	0.68359375	10.5	5-21,1342-1326	1-4,1346-1343[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGGGAAGGAAUGGAAGACGG&GCAACUUCUAUUUUUUUUCUU	2	0.9999775380546	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN23136_c0_g1_1337_TPlot.pdf
TRINITY_DN23136_c0_g1:1346	si_a70	TRINITY_DN23136_c0_g1	1335	1356	1346	-23.90	-16.00	0.669456066945607	9	1-4,1356-1353;6-7,1351-1350;8-21,1348-1335	5-5,1352-1352[SIL];x-x,1349-1349[BULt]	((((((((((((((.((.((((&)))).))-))))))))))))))	AAUGGAAGACGGUUAUGUGGGA&UCUUUCA-AAUUGUUUUUCAUU	2	0.999998159298689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN23136_c0_g1_1346_TPlot.pdf
TRINITY_DN23136_c0_g1:1357	si_s246	TRINITY_DN23136_c0_g1	1347	1366	1357	-31.70	-20.70	0.652996845425867	6.5	2-5,1365-1362;7-14,1360-1353;16-20,1352-1348	1-1,1366-1366[UP5];6-6,1361-1361[SIL];15-15,x-x[BULq];21-21,1347-1347[UP3]	.(((((-((((((((.((((.&.)))).)))))))).))))).	UUAUGU-GGGAAAUGGCUGUG&AAUAGGCAUUUCCCGAUAUAU	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN23136_c0_g1_1357_TPlot.pdf
TRINITY_DN23136_c0_g1:397	si_s396	TRINITY_DN23136_c0_g1	386	405	397	-32.90	-22.60	0.68693009118541	8	1-2,405-404;4-16,403-391	3-3,x-x[BULq];17-21,390-386[UP3]	.....(((((((((((((-((&)).))))))))))))).....	GUGAUGUCUUCCUUGGAG-GU&ACAUUCCAAGGAAGACGAAAA	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN23136_c0_g1_397_TPlot.pdf
TRINITY_DN23136_c0_g1:702	si_a326	TRINITY_DN23136_c0_g1	691	711	702	-26.20	-17.20	0.656488549618321	10	3-9,709-703;11-21,701-691	1-2,711-710[UP5];10-10,702-702[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GAUAGGGAAUAUAGGGAUUUG&AUGAUUUUUUUAUUCCUUGUC	2	0.999999786269008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN23136_c0_g1_702_TPlot.pdf
TRINITY_DN2313_c0_g1:2642	si_s40	TRINITY_DN2313_c0_g1	2633	2651	2642	-24.30	-15.80	0.650205761316872	4.5	2-11,2650-2641;13-16,2640-2637;18-21,2636-2633	1-1,2651-2651[UP5];12-12,x-x[BULq];17-17,x-x[BULq]	((((-((((-((((((((((.&.)))))))))).)))).))))	GAAA-CCAG-UAUUAAAGAUG&AAUCUUUAAUAAUUGGAUUUC	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN2313_c0_g1_2642_TPlot.pdf
TRINITY_DN2313_c0_g1:4219	si_a763	TRINITY_DN2313_c0_g1	4208	4228	4219	-28.80	-19.60	0.680555555555556	9.5	4-15,4225-4214;18-20,4211-4209	1-3,4228-4226[UP5];16-17,4213-4212[SIL];21-21,4208-4208[UP3]	.(((..((((((((((((...&...))))))))))))..))).	GGAAAGAGUCAGAAACCCUGC&UUUGGGUUUUUGAUUGAUUCA	4	0.999999073922236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2313_c0_g1_4219_TPlot.pdf
TRINITY_DN2313_c0_g1:4686	si_a315	TRINITY_DN2313_c0_g1	4668	4695	4686	-27.00	-18.90	0.7	17.5	1-11,4695-4685;13-21,4676-4668	12-12,4684-4677[AILt]	(((((((((........(((((((((((&)))))))))))-------.)))))))))	GAAAAAUCAACGGACGAGGAUGAAUCCA&UGGAUUUAUCC-------AUGAUUUUUU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN2313_c0_g1_4686_TPlot.pdf
TRINITY_DN2314_c1_g1:2309	si_a788	TRINITY_DN2314_c1_g1	2297	2318	2309	-24.80	-17.00	0.685483870967742	7.5	1-7,2318-2312;9-10,2310-2309;11-19,2307-2299	8-8,2311-2311[SIL];x-x,2308-2308[BULt];20-21,2298-2297[UP3]	..(((((((((.((.(((((((&))))))).))-)))))))))..	UGGGAAGAUAGCAAUAAUGGAA&UUCUAUUUUU-CUAUUUUCCAA	2	0.999995762223937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2314_c1_g1_2309_TPlot.pdf
TRINITY_DN2314_c1_g1:2310	si_a787	TRINITY_DN2314_c1_g1	2298	2319	2310	-26.30	-17.20	0.653992395437262	7.5	2-8,2318-2312;10-11,2310-2309;12-20,2307-2299	1-1,2319-2319[UP5];9-9,2311-2311[SIL];x-x,2308-2308[BULt];21-21,2298-2298[UP3]	.(((((((((.((.(((((((.&.))))))).))-))))))))).	GGGAAGAUAGCAAUAAUGGAAA&CUUCUAUUUUU-CUAUUUUCCA	2	0.999999999952588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2314_c1_g1_2310_TPlot.pdf
TRINITY_DN2314_c1_g1:2311	si_a786	TRINITY_DN2314_c1_g1	2299	2321	2311	-26.60	-17.30	0.650375939849624	7.5	1-4,2321-2318;5-9,2316-2312;11-12,2310-2309;13-21,2307-2299	x-x,2317-2317[BULt];10-10,2311-2311[SIL];x-x,2308-2308[BULt]	(((((((((.((.(((((.((((&))))-))))).))-)))))))))	GGAAGAUAGCAAUAAUGGAAAGA&UCUU-CUAUUUUU-CUAUUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2314_c1_g1_2311_TPlot.pdf
TRINITY_DN2314_c1_g1:2312	si_a785	TRINITY_DN2314_c1_g1	2300	2322	2312	-25.90	-17.20	0.664092664092664	6.5	1-5,2322-2318;6-10,2316-2312;12-13,2310-2309;14-21,2307-2300	x-x,2317-2317[BULt];11-11,2311-2311[SIL];x-x,2308-2308[BULt]	((((((((.((.(((((.(((((&)))))-))))).))-))))))))	GAAGAUAGCAAUAAUGGAAAGAG&CUCUU-CUAUUUUU-CUAUUUUC	2	0.999999999977532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2314_c1_g1_2312_TPlot.pdf
TRINITY_DN23156_c0_g1:682	si_s173	TRINITY_DN23156_c0_g1	667	691	682	-39.70	-26.50	0.667506297229219	8.5	1-3,691-689;5-13,687-679;14-19,674-669	4-4,688-688[SIL];x-x,678-675[BULt];20-21,668-667[UP3]	..((((((....(((((((((.(((&))).)))))))))----))))))..	CCACUUGGAACAGCAUCUUUAGCCC&GGGGUAAAGAUGC----CCGAGUAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN23156_c0_g1_682_TPlot.pdf
TRINITY_DN23156_c0_g1:899	si_a630	TRINITY_DN23156_c0_g1	891	908	899	-25.80	-16.80	0.651162790697674	7	1-10,908-899;14-21,898-891	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	UCAAGAAG---GACAUAAUGC&GUAUUAUGUCGAUUUUUUUGA	3	0.99999999802248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN23156_c0_g1_899_TPlot.pdf
TRINITY_DN2315_c0_g1:1137	si_a638	TRINITY_DN2315_c0_g1	1126	1146	1137	-24.40	-15.90	0.651639344262295	10.5	3-11,1144-1136;13-20,1134-1127	1-2,1146-1145[UP5];12-12,1135-1135[SIL];21-21,1126-1126[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AGUAUUACUGGAAGAGAUUUU&UCGAUUUUUUUGAGUAAUAUA	4	0.99999999196975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN2315_c0_g1_1137_TPlot.pdf
TRINITY_DN2315_c0_g1:1332	si_a73	TRINITY_DN2315_c0_g1	1321	1341	1332	-21.90	-16.30	0.744292237442922	9.5	1-6,1341-1336;9-19,1333-1323	7-8,1335-1334[SIL];20-21,1322-1321[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	CUUGGUGAGAGACUUUUUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2315_c0_g1_1332_TPlot.pdf
TRINITY_DN2315_c0_g1:1333	si_a72	TRINITY_DN2315_c0_g1	1322	1342	1333	-21.90	-16.40	0.748858447488584	9.5	2-7,1341-1336;10-20,1333-1323	1-1,1342-1342[UP5];8-9,1335-1334[SIL];21-21,1322-1322[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	UUGGUGAGAGACUUUUUGGAC&UUUCAAAUUGUUUUUCAUUAU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN2315_c0_g1_1333_TPlot.pdf
TRINITY_DN2315_c0_g1:1864	si_a656	TRINITY_DN2315_c0_g1	1853	1873	1864	-33.80	-22.20	0.656804733727811	9	4-16,1870-1858;18-21,1856-1853	1-3,1873-1871[UP5];17-17,1857-1857[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UCGAAGGGCAUUUCUUGAAUU&AUAUCGGGAAAUGCCUAUUGA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN2315_c0_g1_1864_TPlot.pdf
TRINITY_DN2315_c0_g1:2881	si_a402	TRINITY_DN2315_c0_g1	2870	2890	2881	-22.40	-15.70	0.700892857142857	10	2-16,2889-2875	1-1,2890-2890[UP5];17-21,2874-2870[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUGGCAAACGAGGCGAUUCUC&UAGAAUUGUUUUGUUUAUAUU	4	0.999990652142784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN2315_c0_g1_2881_TPlot.pdf
TRINITY_DN2315_c0_g1:2885	si_a398	TRINITY_DN2315_c0_g1	2874	2894	2885	-22.40	-15.70	0.700892857142857	12.5	6-20,2889-2875	1-5,2894-2890[UP5];21-21,2874-2874[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAAACGAGGCGAUUCUCCAAC&AAUAUAGAAUUGUUUUGUUUA	2	0.99689584287701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2315_c0_g1_2885_TPlot.pdf
TRINITY_DN2315_c0_g1:3564	si_s72	TRINITY_DN2315_c0_g1	3554	3573	3564	-24.10	-15.70	0.651452282157676	7.5	4-16,3570-3558;18-21,3557-3554	1-3,3573-3571[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	GAGG-AAGAAAAAGAAUAUAU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2315_c0_g1_3564_TPlot.pdf
TRINITY_DN2315_c0_g1:4620	si_s7	TRINITY_DN2315_c0_g1	4609	4629	4620	-21.70	-15.70	0.723502304147465	10.5	3-17,4627-4613	1-2,4629-4628[UP5];18-21,4612-4609[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGAGAGUAGUGAUAGGUAGGU&UAUUACUUAUUAUUACUAUAU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN2315_c0_g1_4620_TPlot.pdf
TRINITY_DN2315_c0_g1:4751	si_s492	TRINITY_DN2315_c0_g1	4739	4760	4751	-20.10	-13.90	0.691542288557214	4	1-8,4760-4753;10-19,4751-4742;20-21,4740-4739	9-9,4752-4752[SIL];x-x,4741-4741[BULt]	((.((((((((((.((((((((&)))))))).))))))))))-))	UGUUUUUGUUUAUUUUUAGAUA&UAUUUAAAUAUAAACAAAA-CA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN2315_c0_g1_4751_TPlot.pdf
TRINITY_DN23163_c0_g1:1739	si_s72	TRINITY_DN23163_c0_g1	1727	1748	1739	-24.10	-15.70	0.651452282157676	8.5	3-9,1746-1740;11-14,1738-1735;15-21,1733-1727	1-2,1748-1747[UP5];10-10,1739-1739[SIL];x-x,1734-1734[BULt]	(((((((.((((.(((((((..&..))))))).))))-)))))))	GAGGAAAUGAAAUAAGAUGGUU&UUCUAUUUUUUUUC-UUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN23163_c0_g1_1739_TPlot.pdf
TRINITY_DN23166_c0_g1:92	si_a899	TRINITY_DN23166_c0_g1	81	104	92	-18.70	-12.20	0.652406417112299	9.5	2-7,103-98;8-20,94-82	1-1,104-104[UP5];x-x,97-95[BULt];21-21,81-81[UP3]	.(((((((((((((...((((((.&.))))))---))))))))))))).	GUUUUGUAUUGCUUUGAAUUAUUU&UAAUAAU---AAGUAAUAUAAAAA	4	0.99991663427952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN23166_c0_g1_92_TPlot.pdf
TRINITY_DN23176_c0_g1:1019	si_s90	TRINITY_DN23176_c0_g1	1009	1028	1019	-35.30	-25.40	0.719546742209632	5	1-10,1028-1019;13-20,1017-1010	11-12,1018-1018[AILq];21-21,1009-1009[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	GCGAAGCGAC-AAGAAGAAAG&CUUUCUUCUUCUUCGCUUCGG	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN23176_c0_g1_1019_TPlot.pdf
TRINITY_DN23176_c0_g1:1020	si_s89	TRINITY_DN23176_c0_g1	1010	1029	1020	-35.30	-25.50	0.722379603399434	4	2-11,1028-1019;14-21,1017-1010	1-1,1029-1029[UP5];12-13,1018-1018[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	CGAAGCGAC-AAGAAGAAAGA&CCUUUCUUCUUCUUCGCUUCG	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN23176_c0_g1_1020_TPlot.pdf
TRINITY_DN23176_c0_g1:806	si_a626	TRINITY_DN23176_c0_g1	795	814	806	-30.20	-21.90	0.725165562913907	6	2-6,813-809;8-12,808-804;14-21,802-795	1-1,814-814[UP5];7-7,x-x[BULq];13-13,803-803[SIL]	((((((((.(((((-(((((.&.))))).))))).))))))))	GAGAAUCGUCAUAA-GCGCCA&AGGCGUAUUAUGUCGAUUUUU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN23176_c0_g1_806_TPlot.pdf
TRINITY_DN23179_c0_g1:302	si_a145	TRINITY_DN23179_c0_g1	291	311	302	-28.10	-18.40	0.654804270462633	13.5	8-21,304-291	1-7,311-305[UP5]	((((((((((((((.......&.......))))))))))))))	ACCUUGAAACAACAUUUCAAC&UAAUCGUUGUUGUUUUAAGGU	4	0.999999262038053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN23179_c0_g1_302_TPlot.pdf
TRINITY_DN2317_c0_g1:1523	si_a66	TRINITY_DN2317_c0_g1	1513	1532	1523	-26.70	-19.10	0.715355805243446	7	1-11,1532-1522;15-21,1519-1513	12-14,1521-1520[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	GAGAACACG-UGGAAGAAGUG&CGCUUCUUUCAAAUUGUUUUU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2317_c0_g1_1523_TPlot.pdf
TRINITY_DN2317_c0_g1:1579	si_s99	TRINITY_DN2317_c0_g1	1568	1588	1579	-34.60	-22.60	0.653179190751445	8.5	2-12,1587-1577;15-18,1574-1571	1-1,1588-1588[UP5];13-14,1576-1575[SIL];19-21,1570-1568[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	GCAUUCAUCCCGAGGCGAGGC&UCUUCGCUUCGGAUUGGAAAA	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN2317_c0_g1_1579_TPlot.pdf
TRINITY_DN2317_c0_g1:1598	si_a147	TRINITY_DN2317_c0_g1	1585	1607	1598	-30.40	-19.96	0.656578947368421	12.5	2-12,1606-1596;16-20,1590-1586	1-1,1607-1607[UP5];13-15,1595-1591[AILt];21-21,1585-1585[UP3]	.(((((.....(((((((((((.&.)))))))))))--...))))).	AGGCCUAUGCCAGCGACGACGAA&AUCGUUGUUGUU--UUAAGGUCA	3	0.999999919643743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN2317_c0_g1_1598_TPlot.pdf
TRINITY_DN2317_c0_g1:1599	si_a146	TRINITY_DN2317_c0_g1	1586	1608	1599	-29.70	-19.46	0.655218855218855	11.5	3-13,1606-1596;17-21,1590-1586	1-2,1608-1607[UP5];14-16,1595-1591[AILt]	(((((.....(((((((((((..&..)))))))))))--...)))))	GGCCUAUGCCAGCGACGACGAAG&AAUCGUUGUUGUU--UUAAGGUC	4	0.999999969905976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN2317_c0_g1_1599_TPlot.pdf
TRINITY_DN2317_c0_g1:1748	si_a221	TRINITY_DN2317_c0_g1	1737	1757	1748	-25.20	-16.80	0.666666666666667	7.5	4-11,1754-1747;13-21,1745-1737	1-3,1757-1755[UP5];12-12,1746-1746[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UUGUAGAAAAAUGAGUUUUGG&AUUAAACUCAUGUUUCUAUAA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN2317_c0_g1_1748_TPlot.pdf
TRINITY_DN2317_c0_g1:1770	si_a836	TRINITY_DN2317_c0_g1	1759	1779	1770	-24.10	-16.50	0.684647302904564	3.5	1-11,1779-1769;14-21,1766-1759	12-13,1768-1767[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	UUAGUAACAACUAUUUUUUUU&AAAAAAAAUAGAAGUUGCUAA	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN2317_c0_g1_1770_TPlot.pdf
TRINITY_DN2317_c0_g1:1771	si_a835	TRINITY_DN2317_c0_g1	1760	1780	1771	-26.00	-17.20	0.661538461538462	3	1-12,1780-1769;15-21,1766-1760	13-14,1768-1767[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	UAGUAACAACUAUUUUUUUUU&GAAAAAAAAUAGAAGUUGCUA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN2317_c0_g1_1771_TPlot.pdf
TRINITY_DN23183_c0_g1:1080	si_a610	TRINITY_DN23183_c0_g1	1069	1089	1080	-38.10	-26.50	0.695538057742782	5.5	2-15,1088-1075;18-20,1072-1070	1-1,1089-1089[UP5];16-17,1074-1073[SIL];21-21,1069-1069[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	AGCUGCGUCGGUUGGAAUUGG&GCAAUUCCAAUCGACUAGGCG	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a610_TRINITY_DN23183_c0_g1_1080_TPlot.pdf
TRINITY_DN23183_c0_g1:1083	si_a607	TRINITY_DN23183_c0_g1	1071	1092	1083	-34.30	-23.40	0.682215743440233	9	5-18,1088-1075;19-21,1073-1071	1-4,1092-1089[UP5];x-x,1074-1074[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	CUGCGUCGGUUGGAAUUGGUCU&UUCGCAAUUCCAAUCGAC-UAG	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a607_TRINITY_DN23183_c0_g1_1083_TPlot.pdf
TRINITY_DN23183_c0_g1:1084	si_a606	TRINITY_DN23183_c0_g1	1073	1096	1084	-32.60	-22.40	0.687116564417178	10.5	1-5,1096-1092;6-19,1088-1075	x-x,1091-1089[BULt];20-21,1074-1073[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	GCGUCGGUUGGAAUUGGUCUGGAA&UUUCG---CAAUUCCAAUCGACUA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN23183_c0_g1_1084_TPlot.pdf
TRINITY_DN23183_c0_g1:1085	si_a605	TRINITY_DN23183_c0_g1	1074	1097	1085	-32.20	-22.60	0.701863354037267	10.5	2-6,1096-1092;7-20,1088-1075	1-1,1097-1097[UP5];x-x,1091-1089[BULt];21-21,1074-1074[UP3]	.((((((((((((((...(((((.&.)))))---)))))))))))))).	CGUCGGUUGGAAUUGGUCUGGAAU&UUUUCG---CAAUUCCAAUCGACU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN23183_c0_g1_1085_TPlot.pdf
TRINITY_DN23183_c0_g1:665	si_a125	TRINITY_DN23183_c0_g1	655	674	665	-25.00	-17.70	0.708	5	1-7,674-668;9-14,666-661;16-21,660-655	8-8,667-667[SIL];15-15,x-x[BULq]	((((((-((((((.(((((((&))))))).)))))).))))))	GAUUGC-AUUGCUUUAAGACA&UGUUUUAUAGCAAUAGUAAUU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN23183_c0_g1_665_TPlot.pdf
TRINITY_DN23183_c0_g1:666	si_a124	TRINITY_DN23183_c0_g1	656	675	666	-25.10	-16.70	0.665338645418327	5.5	2-8,674-668;10-15,666-661;17-21,660-656	1-1,675-675[UP5];9-9,667-667[SIL];16-16,x-x[BULq]	(((((-((((((.(((((((.&.))))))).)))))).)))))	AUUGC-AUUGCUUUAAGACAU&UUGUUUUAUAGCAAUAGUAAU	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN23183_c0_g1_666_TPlot.pdf
TRINITY_DN23183_c0_g1:862	si_s75	TRINITY_DN23183_c0_g1	851	871	862	-24.00	-17.90	0.745833333333333	6	1-8,871-864;10-19,862-853	9-9,863-863[SIL];20-21,852-851[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UUGAAGGAGAGAUAAAGAAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999913844887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN23183_c0_g1_862_TPlot.pdf
TRINITY_DN23183_c0_g1:863	si_s74	TRINITY_DN23183_c0_g1	852	872	863	-25.00	-18.10	0.724	6	2-9,871-864;11-20,862-853	1-1,872-872[UP5];10-10,863-863[SIL];21-21,852-852[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UGAAGGAGAGAUAAAGAAUAU&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999469538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN23183_c0_g1_863_TPlot.pdf
TRINITY_DN23184_c0_g1:25	si_a323	TRINITY_DN23184_c0_g1	15	34	25	-26.80	-20.80	0.776119402985075	4	2-13,33-22;15-21,21-15	1-1,34-34[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	AAGGGAU-GAAAAAUCGUGGU&UCCAUGAUUUUUUUAUUCCUU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN23184_c0_g1_25_TPlot.pdf
TRINITY_DN23184_c0_g1:27	si_a321	TRINITY_DN23184_c0_g1	17	36	27	-26.70	-18.60	0.696629213483146	8	4-15,33-22;17-21,21-17	1-3,36-34[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	GGGAU-GAAAAAUCGUGGUAU&UAUCCAUGAUUUUUUUAUUCC	2	0.962588730329404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN23184_c0_g1_27_TPlot.pdf
TRINITY_DN23185_c0_g1:13	si_a20	TRINITY_DN23185_c0_g1	2	22	13	-26.70	-17.60	0.659176029962547	8	3-11,20-12;13-20,10-3	1-2,22-21[UP5];12-12,11-11[SIL];21-21,2-2[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AAGAACUAACAGUAGAUAGAU&GCCUAUUUAUUUUUAGUUCUA	0	0.349982337999353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN23185_c0_g1_13_TPlot.pdf
TRINITY_DN23194_c0_g1:462	si_s307	TRINITY_DN23194_c0_g1	448	471	462	-32.90	-23.10	0.702127659574468	10	3-13,469-459;14-21,455-448	1-2,471-470[UP5];x-x,458-456[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	AGGGGGGCGAAGGGGUUUUCGCCC&UUGCGAAAAUUCU---GUCCUUCU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN23194_c0_g1_462_TPlot.pdf
TRINITY_DN23194_c0_g1:463	si_s306	TRINITY_DN23194_c0_g1	449	472	463	-32.30	-21.80	0.674922600619195	12	4-14,469-459;15-21,455-449	1-3,472-470[UP5];x-x,458-456[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	GGGGGGCGAAGGGGUUUUCGCCCC&AUUGCGAAAAUUCU---GUCCUUC	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN23194_c0_g1_463_TPlot.pdf
TRINITY_DN23195_c0_g1:70	si_a471	TRINITY_DN23195_c0_g1	59	79	70	-21.10	-14.80	0.701421800947867	8	1-16,79-64	17-21,63-59[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUUUGCAGUAGUUAUAUAUU&AAUAUGUAAUUAUUGUUAUAU	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN23195_c0_g1_70_TPlot.pdf
TRINITY_DN23195_c0_g1:73	si_a468	TRINITY_DN23195_c0_g1	62	82	73	-21.30	-14.80	0.694835680751174	9.5	4-19,79-64	1-3,82-80[UP5];20-21,63-62[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGCAGUAGUUAUAUAUUUCA&UAUAAUAUGUAAUUAUUGUUA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN23195_c0_g1_73_TPlot.pdf
TRINITY_DN23195_c0_g1:74	si_a467	TRINITY_DN23195_c0_g1	63	83	74	-21.10	-14.80	0.701421800947867	10.5	5-20,79-64	1-4,83-80[UP5];21-21,63-63[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGCAGUAGUUAUAUAUUUCAA&AUAUAAUAUGUAAUUAUUGUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN23195_c0_g1_74_TPlot.pdf
TRINITY_DN23195_c0_g1:75	si_a466	TRINITY_DN23195_c0_g1	64	84	75	-21.50	-14.80	0.688372093023256	11.5	6-21,79-64	1-5,84-80[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCAGUAGUUAUAUAUUUCAAG&UAUAUAAUAUGUAAUUAUUGU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN23195_c0_g1_75_TPlot.pdf
TRINITY_DN23199_c0_g1:194	si_a784	TRINITY_DN23199_c0_g1	182	203	194	-24.70	-18.30	0.740890688259109	8	1-10,203-194;11-17,192-186	x-x,193-193[BULt];18-21,185-182[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AAACUGGAGAGAAUAGAAGAGU&ACUCUUCUAU-UUUUCUAUUUU	1	0.103627992650107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN23199_c0_g1_194_TPlot.pdf
TRINITY_DN23199_c0_g1:202	si_a776	TRINITY_DN23199_c0_g1	191	222	202	-27.10	-19.10	0.70479704797048	23	1-7,222-216;8-21,204-191	x-x,215-205[BULt]	((((((((((((((...........(((((((&)))))))-----------))))))))))))))	AGAAUAGAAGAGUUCCCUACUGGUGGAAUCAG&UUGAUUC-----------AACUCUUCUAUUUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN23199_c0_g1_202_TPlot.pdf
TRINITY_DN231_c0_g1:1757	si_a350	TRINITY_DN231_c0_g1	1746	1766	1757	-20.30	-13.20	0.650246305418719	12.5	5-19,1762-1748	1-4,1766-1763[UP5];20-21,1747-1746[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAAAUGGAGUUGAUGCAAG&AAAAUAUUAAUUCUAUUUUGA	4	0.999999772470979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN231_c0_g1_1757_TPlot.pdf
TRINITY_DN23200_c0_g2:202	si_s889	TRINITY_DN23200_c0_g2	191	211	202	-28.80	-18.90	0.65625	16	8-20,204-192	1-7,211-205[UP5];21-21,191-191[UP3]	.(((((((((((((.......&.......))))))))))))).	CAAGAGGAGGCCUGGGGAUCC&AAAUAAAUAGGCUUUCUCUUC	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN23200_c0_g2_202_TPlot.pdf
TRINITY_DN23200_c0_g2:254	si_s626	TRINITY_DN23200_c0_g2	242	263	254	-36.10	-24.30	0.673130193905817	12	3-4,261-260;6-10,258-254;13-21,250-242	1-2,263-262[UP5];5-5,259-259[SIL];11-12,253-251[AILt]	(((((((((...(((((.((..&..)).)))))-..)))))))))	ACGCCUACGCCUAAGGUGGCGA&AAGCGAUCUU-UUCGUAGGCGU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN23200_c0_g2_254_TPlot.pdf
TRINITY_DN23200_c0_g2:580	si_s171	TRINITY_DN23200_c0_g2	568	589	580	-41.60	-27.10	0.651442307692308	8	3-12,587-578;14-16,576-574;17-19,572-570	1-2,589-588[UP5];13-13,577-577[SIL];x-x,573-573[BULt];20-21,569-568[UP3]	..(((.(((.((((((((((..&..)))))))))).)))-)))..	AAUCGUGGCUUCUUUGCCCCCC&CAGGGGUAAAGAUGCC-CGAGU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s171_TRINITY_DN23200_c0_g2_580_TPlot.pdf
TRINITY_DN23200_c0_g2:778	si_s630	TRINITY_DN23200_c0_g2	766	787	778	-35.60	-23.30	0.654494382022472	7	1-9,787-779;11-11,777-777;13-20,775-768;21-21,766-766	10-10,778-778[SIL];12-12,776-776[SIL];x-x,767-767[BULt]	(.((((((((.(.(((((((((&))))))))).).))))))))-)	GCCAAGCGUCAAGGGAAAGAUC&GAUCUUUUCGUAGGCGUUUG-C	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN23200_c0_g2_778_TPlot.pdf
TRINITY_DN23200_c0_g2:779	si_s629	TRINITY_DN23200_c0_g2	768	788	779	-34.60	-25.40	0.734104046242774	5	1-10,788-779;12-12,777-777;14-21,775-768	11-11,778-778[SIL];13-13,776-776[SIL]	((((((((.(.((((((((((&)))))))))).).))))))))	CAAGCGUCAAGGGAAAGAUCG&CGAUCUUUUCGUAGGCGUUUG	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN23200_c0_g2_779_TPlot.pdf
TRINITY_DN2321_c0_g1:250	si_a187	TRINITY_DN2321_c0_g1	239	263	250	-32.00	-22.40	0.7	12	1-9,263-255;10-19,250-241	x-x,254-251[BULt];20-21,240-239[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	AUUGGACAGGGACAGCAAGAUGUUG&UAAUAUCUU----UCCCUGUUCACU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN2321_c0_g1_250_TPlot.pdf
TRINITY_DN2321_c0_g1:257	si_a184	TRINITY_DN2321_c0_g1	242	267	257	-31.70	-22.10	0.697160883280757	12.5	2-4,266-264;5-12,262-255;13-21,250-242	1-1,267-267[UP5];x-x,263-263[BULt];x-x,254-251[BULt]	(((((((((....((((((((.(((.&.)))-))))))))----)))))))))	GGACAGGGACAGCAAGAUGUUGAUCC&AGAU-AAUAUCUU----UCCCUGUUC	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN2321_c0_g1_257_TPlot.pdf
TRINITY_DN2321_c0_g1:258	si_a183	TRINITY_DN2321_c0_g1	243	268	258	-30.10	-20.00	0.664451827242525	10.5	3-5,266-264;6-13,262-255;14-21,250-243	1-2,268-267[UP5];x-x,263-263[BULt];x-x,254-251[BULt]	((((((((....((((((((.(((..&..)))-))))))))----))))))))	GACAGGGACAGCAAGAUGUUGAUCCU&UAGAU-AAUAUCUU----UCCCUGUU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN2321_c0_g1_258_TPlot.pdf
TRINITY_DN2321_c0_g1:593	si_s290	TRINITY_DN2321_c0_g1	581	602	593	-38.10	-24.80	0.650918635170604	6.5	1-5,602-598;7-13,596-590;15-18,588-585;19-21,583-581	6-6,597-597[SIL];14-14,589-589[SIL];x-x,584-584[BULt]	(((.((((.(((((((.(((((&))))).))))))).))))-)))	GCGCAUUCGAGUUGACAAGGCG&CGCCUAGUCGAUUGGAAU-UGC	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN2321_c0_g1_593_TPlot.pdf
TRINITY_DN23224_c0_g2:154	si_s899	TRINITY_DN23224_c0_g2	144	163	154	-28.30	-18.52	0.654416961130742	9.5	1-11,163-153;16-18,149-147	12-15,152-150[AILq];19-21,146-144[UP3]	...(((...-(((((((((((&)))))))))))....)))...	CUCUGGUCG-GAAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	2	0.999999715429906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN23224_c0_g2_154_TPlot.pdf
TRINITY_DN23244_c0_g5:93	si_s291	TRINITY_DN23244_c0_g5	82	102	93	-38.10	-28.00	0.73490813648294	7.5	1-7,102-96;9-12,94-91;14-21,89-82	8-8,95-95[SIL];13-13,90-90[SIL]	((((((((.((((.(((((((&))))))).)))).))))))))	CGCGGUUUGGAUCUGCUGGGC&GCCUAGUCGAUUGGAAUUGCG	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN23244_c0_g5_93_TPlot.pdf
TRINITY_DN23245_c0_g1:110	si_a467	TRINITY_DN23245_c0_g1	99	119	110	-21.10	-14.20	0.672985781990521	10.5	5-19,115-101	1-4,119-116[UP5];20-21,100-99[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUCGAUGGUUACAUAUUCCGA&AUAUAAUAUGUAAUUAUUGUU	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN23245_c0_g1_110_TPlot.pdf
TRINITY_DN2324_c0_g1:57	si_s506	TRINITY_DN2324_c0_g1	44	67	57	-24.30	-17.00	0.699588477366255	8.5	1-9,67-59;10-12,57-55;13-20,52-45	x-x,58-58[BULt];x-x,54-53[BULt];21-21,44-44[UP3]	.((((((((..(((.(((((((((&)))))))))-)))--)))))))).	GGAGAAUAUCUGGAUAUUGUUUUG&CAAAACAAU-UCU--AUAUUCUUA	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN2324_c0_g1_57_TPlot.pdf
TRINITY_DN2324_c0_g1:59	si_s505	TRINITY_DN2324_c0_g1	45	68	59	-24.70	-16.80	0.680161943319838	6	2-10,67-59;11-13,57-55;14-21,52-45	1-1,68-68[UP5];x-x,58-58[BULt];x-x,54-53[BULt]	((((((((..(((.(((((((((.&.)))))))))-)))--))))))))	GAGAAUAUCUGGAUAUUGUUUUGG&ACAAAACAAU-UCU--AUAUUCUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN2324_c0_g1_59_TPlot.pdf
TRINITY_DN23256_c1_g1:489	si_a231	TRINITY_DN23256_c1_g1	475	498	489	-26.90	-17.80	0.661710037174721	11	1-12,498-487;13-18,483-478	x-x,486-484[BULt];19-21,477-475[UP3]	...((((((...((((((((((((&))))))))))))---))))))...	ACGGAAUUGCAAGUUAUGGAAACA&UGUUUCUAUAAU---CAAUUCGAU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN23256_c1_g1_489_TPlot.pdf
TRINITY_DN2325_c0_g1:1598	si_a123	TRINITY_DN2325_c0_g1	1586	1607	1598	-26.60	-19.00	0.714285714285714	9	1-11,1607-1597;13-14,1595-1594;15-19,1592-1588	12-12,1596-1596[SIL];x-x,1593-1593[BULt];20-21,1587-1586[UP3]	..(((((.((.(((((((((((&))))))))))).))-)))))..	UGGCUGUAUGGUGUGAAACAGG&CUUGUUUUAUAGCA-AUAGUAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN2325_c0_g1_1598_TPlot.pdf
TRINITY_DN2325_c0_g1:1897	si_a682	TRINITY_DN2325_c0_g1	1875	1906	1897	-35.50	-23.10	0.650704225352113	16.5	3-10,1904-1897;11-13,1895-1893;14-21,1882-1875	1-2,1906-1905[UP5];x-x,1896-1896[BULt];x-x,1892-1883[BULt]	((((((((..........(((.((((((((..&..))))))))-)))----------))))))))	GUGUUCGAAGAAAAAGCGGACGCGCGUGAGCG&UAUUCACGCG-GUU----------UCGAACAC	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a682_TRINITY_DN2325_c0_g1_1897_TPlot.pdf
TRINITY_DN2325_c0_g1:1912	si_s88	TRINITY_DN2325_c0_g1	1901	1924	1912	-34.80	-23.50	0.675287356321839	13	1-8,1924-1917;9-14,1913-1908;16-20,1906-1902	x-x,1916-1914[BULt];15-15,1907-1907[SIL];21-21,1901-1901[UP3]	.(((((.((((((...((((((((&))))))))---)))))).))))).	UGAGCGUGGAGGAUGUGGAGGGGA&UCCUUUCU---UCUUCUUCGCUUC	3	0.999999999999373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2325_c0_g1_1912_TPlot.pdf
TRINITY_DN2325_c0_g1:1915	si_a784	TRINITY_DN2325_c0_g1	1903	1924	1915	-24.70	-16.40	0.663967611336032	12.5	2-10,1923-1915;11-18,1913-1906	1-1,1924-1924[UP5];x-x,1914-1914[BULt];19-21,1905-1903[UP3]	...((((((((.(((((((((.&.)))))))))-))))))))...	AGCGUGGAGGAUGUGGAGGGGA&ACUCUUCUAU-UUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2325_c0_g1_1915_TPlot.pdf
TRINITY_DN2325_c0_g1:1939	si_a71	TRINITY_DN2325_c0_g1	1928	1948	1939	-23.30	-17.10	0.733905579399142	7.5	1-17,1948-1932	18-21,1931-1928[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUCGGGAAAAUGGUUUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN2325_c0_g1_1939_TPlot.pdf
TRINITY_DN2325_c0_g1:1940	si_a70	TRINITY_DN2325_c0_g1	1929	1949	1940	-23.90	-18.50	0.774058577405858	6.5	1-18,1949-1932	19-21,1931-1929[UP3]	...((((((((((((((((((&))))))))))))))))))...	UCGGGAAAAUGGUUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2325_c0_g1_1940_TPlot.pdf
TRINITY_DN2325_c0_g1:1942	si_a68	TRINITY_DN2325_c0_g1	1931	1951	1942	-25.40	-18.70	0.736220472440945	6.5	3-20,1949-1932	1-2,1951-1950[UP5];21-21,1931-1931[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GGGAAAAUGGUUUGAAAGAUA&CUUCUUUCAAAUUGUUUUUCA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2325_c0_g1_1942_TPlot.pdf
TRINITY_DN23267_c0_g2:2301	si_a899	TRINITY_DN23267_c0_g2	2290	2310	2301	-18.70	-16.80	0.898395721925134	4	2-19,2309-2292	1-1,2310-2310[UP5];20-21,2291-2290[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AGUUUAUAUUACUUGUUAUUU&UAAUAAUAAGUAAUAUAAAAA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN23267_c0_g2_2301_TPlot.pdf
TRINITY_DN23267_c0_g2:2302	si_a898	TRINITY_DN23267_c0_g2	2291	2311	2302	-20.50	-16.80	0.819512195121951	5	3-20,2309-2292	1-2,2311-2310[UP5];21-21,2291-2291[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUUUAUAUUACUUGUUAUUUA&GUAAUAAUAAGUAAUAUAAAA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN23267_c0_g2_2302_TPlot.pdf
TRINITY_DN23267_c0_g2:2303	si_a897	TRINITY_DN23267_c0_g2	2292	2312	2303	-21.20	-16.60	0.783018867924528	6	4-21,2309-2292	1-3,2312-2310[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUAUAUUACUUGUUAUUUAU&AGUAAUAAUAAGUAAUAUAAA	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN23267_c0_g2_2303_TPlot.pdf
TRINITY_DN23267_c0_g2:2305	si_a895	TRINITY_DN23267_c0_g2	2294	2315	2305	-21.70	-16.00	0.737327188940092	5	2-7,2314-2309;8-21,2307-2294	1-1,2315-2315[UP5];x-x,2308-2308[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UAUAUUACUUGUUAUUUAUUAA&AUAGUAA-UAAUAAGUAAUAUA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN23267_c0_g2_2305_TPlot.pdf
TRINITY_DN23267_c2_g2:316	si_s675	TRINITY_DN23267_c2_g2	303	325	316	-27.50	-18.20	0.661818181818182	7.5	2-16,324-310;17-21,307-303	1-1,325-325[UP5];x-x,309-308[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GGCUUGUAUGUUUCUAUGGUUAC&UUGAUUAUAGAAACAU--GAGUU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN23267_c2_g2_316_TPlot.pdf
TRINITY_DN23267_c2_g2:501	si_a219	TRINITY_DN23267_c2_g2	490	510	501	-25.10	-18.40	0.733067729083665	15.5	8-21,503-490	1-7,510-504[UP5]	((((((((((((((.......&.......))))))))))))))	GUAGGAGCAUGGGUAGCAGCA&UAAUUAAACUCAUGUUUCUAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN23267_c2_g2_501_TPlot.pdf
TRINITY_DN2326_c0_g1:1023	si_s773	TRINITY_DN2326_c0_g1	1012	1032	1023	-23.10	-15.20	0.658008658008658	15	6-17,1027-1016	1-5,1032-1028[UP5];18-21,1015-1012[UP3]	....((((((((((((.....&.....))))))))))))....	UCGAAUAGCAGUGGUACGAAU&UUAAUUACUAUUGCUAUAAAA	4	0.999999559533988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN2326_c0_g1_1023_TPlot.pdf
TRINITY_DN2326_c0_g1:1055	si_a148	TRINITY_DN2326_c0_g1	1041	1064	1055	-30.30	-20.80	0.686468646864686	12.5	1-12,1064-1053;16-21,1046-1041	13-15,1052-1047[AILt]	((((((......((((((((((((&))))))))))))---...))))))	UUGGCCGCAUCUGAACAAUAGCGA&UCGUUGUUGUUU---UAAGGUCAA	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN2326_c0_g1_1055_TPlot.pdf
TRINITY_DN2326_c0_g1:1056	si_a147	TRINITY_DN2326_c0_g1	1042	1065	1056	-30.40	-21.30	0.700657894736842	9	1-13,1065-1053;17-21,1046-1042	14-16,1052-1047[AILt]	(((((......(((((((((((((&)))))))))))))---...)))))	UGGCCGCAUCUGAACAAUAGCGAU&AUCGUUGUUGUUU---UAAGGUCA	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN2326_c0_g1_1056_TPlot.pdf
TRINITY_DN2326_c0_g1:1057	si_a146	TRINITY_DN2326_c0_g1	1043	1066	1057	-29.70	-20.00	0.673400673400673	10	2-14,1065-1053;18-21,1046-1043	1-1,1066-1066[UP5];15-17,1052-1047[AILt]	((((......(((((((((((((.&.)))))))))))))---...))))	GGCCGCAUCUGAACAAUAGCGAUA&AAUCGUUGUUGUUU---UAAGGUC	2	0.997915632487503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN2326_c0_g1_1057_TPlot.pdf
TRINITY_DN2326_c0_g1:1086	si_s85	TRINITY_DN2326_c0_g1	1075	1095	1086	-33.80	-23.10	0.683431952662722	4.5	1-15,1095-1081;17-19,1079-1077	16-16,1080-1080[SIL];20-21,1076-1075[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AAGGAAAAGGAGAAAGGAAAG&CUUUCCUUUCUUCUUCUUCGC	4	0.999999999998374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2326_c0_g1_1086_TPlot.pdf
TRINITY_DN2326_c0_g1:1095	si_s76	TRINITY_DN2326_c0_g1	1084	1105	1095	-23.60	-19.70	0.834745762711864	7.5	2-5,1104-1101;7-21,1098-1084	1-1,1105-1105[UP5];6-6,1100-1099[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	GAGAAAGGAAAGAAGUCGAAAG&AUUUU-UUUUCUUUCCUUUCUU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2326_c0_g1_1095_TPlot.pdf
TRINITY_DN2326_c0_g1:1120	si_a779	TRINITY_DN2326_c0_g1	1109	1129	1120	-27.00	-18.20	0.674074074074074	14	7-21,1123-1109	1-6,1129-1124[UP5]	(((((((((((((((......&......)))))))))))))))	AGGGAAGUGGAGGAGACGGUA&AUUCAACUCUUCUAUUUUUCU	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN2326_c0_g1_1120_TPlot.pdf
TRINITY_DN23278_c1_g1:144	si_s556	TRINITY_DN23278_c1_g1	134	150	144	-28.50	-20.20	0.708771929824561	10	1-7,150-144;12-21,143-134	8-11,x-x[BULq]	((((((((((----(((((((&)))))))....))))))))))	GUCCCGAGGA----GAUUCUA&UAGAAUUAAUAUUUUCGGGAC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN23278_c1_g1_144_TPlot.pdf
TRINITY_DN2327_c0_g1:1426	si_a603	TRINITY_DN2327_c0_g1	1416	1436	1426	-29.80	-19.40	0.651006711409396	9	3-9,1434-1428;10-16,1426-1420;18-20,1419-1417	1-2,1436-1435[UP5];x-x,1427-1427[BULt];17-17,x-x[BULq];21-21,1416-1416[UP3]	.(((-(((((((.(((((((..&..)))))))-))))))).))).	ACGA-UGGAGUUCGCGAAGAAG&AAUUUUCGC-AAUUCCAAUCGA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN2327_c0_g1_1426_TPlot.pdf
TRINITY_DN2327_c0_g1:827	si_s548	TRINITY_DN2327_c0_g1	815	836	827	-22.50	-15.20	0.675555555555556	6.5	1-12,836-825;13-18,823-818	x-x,824-824[BULt];19-21,817-815[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UAAAUUAGUGUUUAUUUUGAUC&GAUCAAAAUAGA-AUUAAUAUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN2327_c0_g1_827_TPlot.pdf
TRINITY_DN2327_c0_g1:828	si_s547	TRINITY_DN2327_c0_g1	816	837	828	-24.00	-16.90	0.704166666666667	4.5	1-13,837-825;14-19,823-818	x-x,824-824[BULt];20-21,817-816[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	AAAUUAGUGUUUAUUUUGAUCG&CGAUCAAAAUAGA-AUUAAUAU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN2327_c0_g1_828_TPlot.pdf
TRINITY_DN2327_c0_g1:829	si_s546	TRINITY_DN2327_c0_g1	817	838	829	-26.20	-17.20	0.656488549618321	4	2-14,837-825;15-20,823-818	1-1,838-838[UP5];x-x,824-824[BULt];21-21,817-817[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	AAUUAGUGUUUAUUUUGAUCGU&CCGAUCAAAAUAGA-AUUAAUA	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN2327_c0_g1_829_TPlot.pdf
TRINITY_DN2327_c0_g3:320	si_a788	TRINITY_DN2327_c0_g3	304	329	320	-24.80	-16.38	0.660483870967742	14.5	1-12,329-318;16-21,309-304	13-15,317-310[AILt]	((((((........((((((((((((&))))))))))))-----...))))))	UUGGAGUGCUUACGAGAAAAAUGGAA&UUCUAUUUUUCU-----AUUUUCCAA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2327_c0_g3_320_TPlot.pdf
TRINITY_DN2327_c0_g3:321	si_a787	TRINITY_DN2327_c0_g3	305	330	321	-26.30	-18.68	0.710266159695817	9.5	1-13,330-318;17-21,309-305	14-16,317-310[AILt]	(((((........(((((((((((((&)))))))))))))-----...)))))	UGGAGUGCUUACGAGAAAAAUGGAAG&CUUCUAUUUUUCU-----AUUUUCCA	4	0.999998279742994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2327_c0_g3_321_TPlot.pdf
TRINITY_DN2327_c0_g3:324	si_a784	TRINITY_DN2327_c0_g3	313	333	324	-24.70	-16.20	0.65587044534413	10	3-16,331-318	1-2,333-332[UP5];17-21,317-313[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUACGAGAAAAAUGGAAGGAA&ACUCUUCUAUUUUUCUAUUUU	2	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2327_c0_g3_324_TPlot.pdf
TRINITY_DN23286_c0_g1:102	si_a176	TRINITY_DN23286_c0_g1	91	114	102	-31.70	-20.82	0.656782334384858	12	1-7,114-108;10-12,102-100;14-21,98-91	8-9,107-103[AILt];13-13,99-99[SIL]	((((((((.(((.....(((((((&)))))))---..))).))))))))	AAGGAUGUGAUCGAAAUGACGGGU&ACCCGUC---UAGAUAAUAUCUUU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN23286_c0_g1_102_TPlot.pdf
TRINITY_DN2328_c0_g1:158	si_s73	TRINITY_DN2328_c0_g1	147	167	158	-24.00	-17.40	0.725	7.5	1-6,167-162;8-11,160-157;13-21,155-147	7-7,161-161[SIL];12-12,156-156[SIL]	(((((((((.((((.((((((&)))))).)))).)))))))))	AAGGGAAAGCGGAACGAUAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999999721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2328_c0_g1_158_TPlot.pdf
TRINITY_DN2328_c0_g1:172	si_s70	TRINITY_DN2328_c0_g1	157	181	172	-25.80	-17.60	0.682170542635659	9	1-6,181-176;8-17,174-165;18-21,160-157	7-7,175-175[SIL];x-x,164-161[BULt]	((((....((((((((((.((((((&)))))).))))))))))----))))	GGAACGAUAGAAAGGAAAAGGAAGU&ACUUCUAUUUUUUUUCU----UUCC	2	0.999999999976965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2328_c0_g1_172_TPlot.pdf
TRINITY_DN2328_c0_g1:652	si_s415	TRINITY_DN2328_c0_g1	641	661	652	-26.60	-17.70	0.665413533834586	8	2-14,660-648	1-1,661-661[UP5];15-21,647-641[UP3]	.......(((((((((((((.&.))))))))))))).......	CUGUCAAAGAAUAUGUCGUUC&AAACGACAUAUUCUAUAUAAC	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN2328_c0_g1_652_TPlot.pdf
TRINITY_DN232_c0_g1:100	si_s445	TRINITY_DN232_c0_g1	89	109	100	-21.10	-14.70	0.696682464454976	12	1-11,109-99;13-17,97-93	12-12,98-98[SIL];18-21,92-89[UP3]	....(((((.(((((((((((&))))))))))).)))))....	AUUAGUUGUGGUGUGUGGUGU&AUAUUAUAUAUAACAACAAUU	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN232_c0_g1_100_TPlot.pdf
TRINITY_DN232_c0_g1:103	si_s442	TRINITY_DN232_c0_g1	92	112	103	-23.80	-20.30	0.852941176470588	7.5	1-14,112-99;16-20,97-93	15-15,98-98[SIL];21-21,92-92[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AGUUGUGGUGUGUGGUGUGUA&UACAUAUUAUAUAUAACAACA	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN232_c0_g1_103_TPlot.pdf
TRINITY_DN232_c0_g1:105	si_s440	TRINITY_DN232_c0_g1	94	114	105	-21.60	-16.90	0.782407407407407	9	3-16,112-99;18-21,97-94	1-2,114-113[UP5];17-17,98-98[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UUGUGGUGUGUGGUGUGUAGA&AUUACAUAUUAUAUAUAACAA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN232_c0_g1_105_TPlot.pdf
TRINITY_DN232_c0_g1:106	si_s439	TRINITY_DN232_c0_g1	95	115	106	-21.50	-16.10	0.748837209302326	10.5	4-17,112-99;19-21,97-95	1-3,115-113[UP5];18-18,98-98[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UGUGGUGUGUGGUGUGUAGAU&AAUUACAUAUUAUAUAUAACA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN232_c0_g1_106_TPlot.pdf
TRINITY_DN232_c0_g1:107	si_s438	TRINITY_DN232_c0_g1	96	116	107	-21.20	-14.60	0.688679245283019	12.5	5-18,112-99;20-21,97-96	1-4,116-113[UP5];19-19,98-98[SIL]	((.((((((((((((((....&....)))))))))))))).))	GUGGUGUGUGGUGUGUAGAUA&UAAUUACAUAUUAUAUAUAAC	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN232_c0_g1_107_TPlot.pdf
TRINITY_DN232_c0_g1:108	si_s437	TRINITY_DN232_c0_g1	97	117	108	-19.70	-14.70	0.746192893401015	9	1-3,117-115;5-19,113-99	4-4,114-114[SIL];20-21,98-97[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	UGGUGUGUGGUGUGUAGAUAU&AUAAUUACAUAUUAUAUAUAA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN232_c0_g1_108_TPlot.pdf
TRINITY_DN232_c0_g1:110	si_s435	TRINITY_DN232_c0_g1	99	119	110	-20.90	-15.30	0.732057416267943	7.5	2-5,118-115;7-21,113-99	1-1,119-119[UP5];6-6,114-114[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	GUGUGUGGUGUGUAGAUAUUC&CAAUAAUUACAUAUUAUAUAU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN232_c0_g1_110_TPlot.pdf
TRINITY_DN232_c0_g1:1342	si_a23	TRINITY_DN232_c0_g1	1331	1351	1342	-22.80	-16.00	0.701754385964912	10.5	4-20,1348-1332	1-3,1351-1349[UP5];21-21,1331-1331[UP3]	.(((((((((((((((((...&...))))))))))))))))).	ACUUAGAAUUAAGGGUAGCAU&UAUUUAUUUUUAGUUCUAAGA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN232_c0_g1_1342_TPlot.pdf
TRINITY_DN232_c0_g1:751	si_s509	TRINITY_DN232_c0_g1	740	761	751	-22.80	-15.70	0.68859649122807	6.5	2-4,760-758;6-8,756-754;9-21,752-740	1-1,761-761[UP5];5-5,757-757[SIL];x-x,753-753[BULt]	(((((((((((((.(((.(((.&.))).)))-)))))))))))))	AAUUAAGAGUAUGCGAAGUGUG&AACAAUUC-UAUAUUCUUAAUU	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN232_c0_g1_751_TPlot.pdf
TRINITY_DN232_c0_g1:89	si_a700	TRINITY_DN232_c0_g1	79	98	89	-32.80	-22.80	0.695121951219512	6	1-14,98-85;16-18,84-82	15-15,x-x[BULq];19-21,81-79[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	UCGUGG-AUGUAUUAGUUGUG&CACAACUGGUACAUUCCAAAA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN232_c0_g1_89_TPlot.pdf
TRINITY_DN232_c0_g1:892	si_s76	TRINITY_DN232_c0_g1	881	901	892	-23.60	-18.70	0.792372881355932	5	2-18,900-884	1-1,901-901[UP5];19-21,883-881[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACAAAAGGAAAGAAGAAAAAA&AUUUUUUUUCUUUCCUUUCUU	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN232_c0_g1_892_TPlot.pdf
TRINITY_DN232_c0_g1:898	si_s70	TRINITY_DN232_c0_g1	887	907	898	-25.80	-22.00	0.852713178294574	3.5	2-6,906-902;8-21,900-887	1-1,907-907[UP5];7-7,901-901[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GGAAAGAAGAAAAAAAGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN232_c0_g1_898_TPlot.pdf
TRINITY_DN232_c0_g1:899	si_s69	TRINITY_DN232_c0_g1	888	908	899	-23.40	-18.70	0.799145299145299	5.5	3-7,906-902;9-21,900-888	1-2,908-907[UP5];8-8,901-901[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGAAGAAAAAAAGAAGAC&AACUUCUAUUUUUUUUCUUUC	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN232_c0_g1_899_TPlot.pdf
TRINITY_DN2330_c0_g1:115	si_s429	TRINITY_DN2330_c0_g1	104	124	115	-21.10	-14.40	0.682464454976303	13.5	6-18,119-107	1-5,124-120[UP5];19-21,106-104[UP3]	...(((((((((((((.....&.....)))))))))))))...	CCAGUGUAAUUGUUGUACUAC&AUAUAACAAUAAUUACAUAUU	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN2330_c0_g1_115_TPlot.pdf
TRINITY_DN2332_c0_g1:1838	si_a457	TRINITY_DN2332_c0_g1	1826	1847	1838	-23.50	-16.60	0.706382978723404	5.5	1-15,1847-1833;16-20,1831-1827	x-x,1832-1832[BULt];21-21,1826-1826[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	UCAUGUGUAUGUAUAACAAUGA&UUGUUGUUAUAUAUA-AUAUGU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN2332_c0_g1_1838_TPlot.pdf
TRINITY_DN2332_c0_g1:1839	si_a456	TRINITY_DN2332_c0_g1	1827	1848	1839	-22.80	-16.40	0.719298245614035	5	2-16,1847-1833;17-21,1831-1827	1-1,1848-1848[UP5];x-x,1832-1832[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	CAUGUGUAUGUAUAACAAUGAA&AUUGUUGUUAUAUAUA-AUAUG	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN2332_c0_g1_1839_TPlot.pdf
TRINITY_DN2332_c0_g1:1936	si_a887	TRINITY_DN2332_c0_g1	1925	1945	1936	-22.90	-14.90	0.650655021834061	6	1-12,1945-1934;15-20,1931-1926	13-14,1933-1932[SIL];21-21,1925-1925[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	GUGUUGUGGUUAUAUUGGUUG&CAAUCAAUAUAGUAAUAAUAA	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN2332_c0_g1_1936_TPlot.pdf
TRINITY_DN2332_c0_g1:1938	si_a885	TRINITY_DN2332_c0_g1	1927	1947	1938	-25.60	-16.70	0.65234375	5.5	1-14,1947-1934;17-21,1931-1927	15-16,1933-1932[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	GUUGUGGUUAUAUUGGUUGUA&UGCAAUCAAUAUAGUAAUAAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN2332_c0_g1_1938_TPlot.pdf
TRINITY_DN2332_c0_g1:2087	si_a463	TRINITY_DN2332_c0_g1	2076	2095	2087	-19.70	-13.10	0.66497461928934	7	2-5,2094-2091;7-19,2090-2078	1-1,2095-2095[UP5];6-6,x-x[BULq];20-21,2077-2076[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	UGAAUUACAUGUUAU-UGUAG&UUAUAUAUAAUAUGUAAUUAU	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN2332_c0_g1_2087_TPlot.pdf
TRINITY_DN2332_c0_g1:2089	si_a461	TRINITY_DN2332_c0_g1	2078	2099	2089	-21.50	-14.00	0.651162790697674	6.5	2-4,2098-2096;6-9,2094-2091;10-21,2089-2078	1-1,2099-2099[UP5];5-5,2095-2095[SIL];x-x,2090-2090[BULt]	((((((((((((.((((.(((.&.))).))))-))))))))))))	AAUUACAUGUUAUUGUAGAACG&UGUUAUAUA-UAAUAUGUAAUU	4	0.999950241653235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN2332_c0_g1_2089_TPlot.pdf
TRINITY_DN23335_c0_g1:753	si_a143	TRINITY_DN23335_c0_g1	742	762	753	-25.10	-17.80	0.709163346613546	15	8-21,755-742	1-7,762-756[UP5]	((((((((((((((.......&.......))))))))))))))	CUUGGAACAACAGCAAGGAGA&AUUAAUCGUUGUUGUUUUAAG	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN23335_c0_g1_753_TPlot.pdf
TRINITY_DN23344_c0_g2:1052	si_a317	TRINITY_DN23344_c0_g2	1041	1061	1052	-24.30	-17.20	0.707818930041152	10.5	3-17,1059-1045	1-2,1061-1060[UP5];18-21,1044-1041[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAUCGAGGUCAUGGGUGAAAG&GAUUUAUCCAUGAUUUUUUUA	2	0.994143829972238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN23344_c0_g2_1052_TPlot.pdf
TRINITY_DN23345_c0_g1:46	si_a406	TRINITY_DN23345_c0_g1	35	57	46	-19.80	-13.70	0.691919191919192	7.5	1-6,57-52;7-18,49-38	x-x,51-50[BULt];19-21,37-35[UP3]	...((((((((((((..((((((&))))))--))))))))))))...	CCAAAAUGUAAACAAUUAACAAU&AUUGUU--UUGUUUAUAUUUAAA	2	0.999999993608914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN23345_c0_g1_46_TPlot.pdf
TRINITY_DN23345_c0_g1:47	si_a405	TRINITY_DN23345_c0_g1	36	58	47	-19.80	-13.90	0.702020202020202	7.5	2-7,57-52;8-19,49-38	1-1,58-58[UP5];x-x,51-50[BULt];20-21,37-36[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	CAAAAUGUAAACAAUUAACAAUA&AAUUGUU--UUGUUUAUAUUUAA	0	0.506345357976596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN23345_c0_g1_47_TPlot.pdf
TRINITY_DN23346_c0_g1:184	si_s701	TRINITY_DN23346_c0_g1	175	193	184	-30.50	-20.30	0.665573770491803	6	1-5,193-189;7-10,187-184;13-21,183-175	6-6,188-188[SIL];11-12,x-x[BULq]	(((((((((--((((.(((((&))))).))))..)))))))))	CUGUUCACU--UAAACCGACU&AGUCGAUUUAUUAGUGAACAG	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN23346_c0_g1_184_TPlot.pdf
TRINITY_DN2334_c0_g1:1058	si_a745	TRINITY_DN2334_c0_g1	1048	1070	1058	-42.00	-28.10	0.669047619047619	9.5	1-5,1070-1066;6-12,1062-1056;14-21,1055-1048	x-x,1065-1063[BULt];13-13,x-x[BULq]	((((((((-(((((((...(((((&)))))---))))))).))))))))	AAGGGAGG-UUAUGGUUCACAGGG&CCCUG---GCCAUGAACCUCCUUU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN2334_c0_g1_1058_TPlot.pdf
TRINITY_DN2334_c0_g1:1618	si_s887	TRINITY_DN2334_c0_g1	1607	1627	1618	-26.80	-17.80	0.664179104477612	9.5	5-13,1623-1615;15-21,1613-1607	1-4,1627-1624[UP5];14-14,1614-1614[SIL]	(((((((.(((((((((....&....))))))))).)))))))	AGAGAAGUCCUAUUUGUAGGC&AAAAAUAAAUAGGCUUUCUCU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN2334_c0_g1_1618_TPlot.pdf
TRINITY_DN2335_c0_g1:1340	si_a498	TRINITY_DN2335_c0_g1	1325	1350	1340	-33.50	-21.80	0.650746268656716	10.5	2-5,1349-1346;6-14,1344-1336;15-20,1331-1326	1-1,1350-1350[UP5];x-x,1345-1345[BULt];x-x,1335-1332[BULt];21-21,1325-1325[UP3]	.((((((....(((((((((.((((.&.))))-)))))))))----)))))).	GGAGGAACGAUGACGAAGAGUCGACU&UGUCG-UUUUUCGUC----UUCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2335_c0_g1_1340_TPlot.pdf
TRINITY_DN2335_c0_g1:1341	si_a497	TRINITY_DN2335_c0_g1	1326	1351	1341	-32.00	-21.70	0.678125	11.5	3-6,1349-1346;7-15,1344-1336;16-21,1331-1326	1-2,1351-1350[UP5];x-x,1345-1345[BULt];x-x,1335-1332[BULt]	((((((....(((((((((.((((..&..))))-)))))))))----))))))	GAGGAACGAUGACGAAGAGUCGACUU&AUGUCG-UUUUUCGUC----UUCCUU	2	0.999999917002468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2335_c0_g1_1341_TPlot.pdf
TRINITY_DN23363_c0_g2:1024	si_s524	TRINITY_DN23363_c0_g2	1012	1033	1024	-23.90	-15.80	0.661087866108787	6.5	1-7,1033-1027;9-10,1025-1024;11-20,1022-1013	8-8,1026-1026[SIL];x-x,1023-1023[BULt];21-21,1012-1012[UP3]	.((((((((((.((.(((((((&))))))).))-)))))))))).	ACGAAAAUGAUCUUGGGAUUAA&UUAAUUCGAA-AUCAUUUUUGA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN23363_c0_g2_1024_TPlot.pdf
TRINITY_DN23363_c0_g2:1034	si_a22	TRINITY_DN23363_c0_g2	1023	1044	1034	-23.50	-16.10	0.685106382978724	6.5	1-6,1044-1039;8-21,1036-1023	7-7,1038-1037[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	CUUGGGAUUAAAAAGAAAAUGG&CUAUUU-AUUUUUAGUUCUAAG	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN23363_c0_g2_1034_TPlot.pdf
TRINITY_DN23363_c0_g2:1110	si_s74	TRINITY_DN23363_c0_g2	1093	1119	1110	-25.00	-17.50	0.7	12	1-13,1119-1107;14-20,1100-1094	x-x,1106-1101[BULt];21-21,1093-1093[UP3]	.(((((((......(((((((((((((&)))))))))))))------))))))).	CGAGGGAAGAUAUUAGAGAAGAAGUGG&CUAUUUUUUUUCU------UUCCUUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN23363_c0_g2_1110_TPlot.pdf
TRINITY_DN23363_c0_g2:1111	si_s73	TRINITY_DN23363_c0_g2	1094	1120	1111	-24.00	-18.90	0.7875	11	1-14,1120-1107;15-21,1100-1094	x-x,1106-1101[BULt]	(((((((......((((((((((((((&))))))))))))))------)))))))	GAGGGAAGAUAUUAGAGAAGAAGUGGA&UCUAUUUUUUUUCU------UUCCUUU	3	0.999797023763102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN23363_c0_g2_1111_TPlot.pdf
TRINITY_DN23363_c0_g2:1112	si_s72	TRINITY_DN23363_c0_g2	1095	1121	1112	-24.10	-17.90	0.742738589211618	11.5	2-15,1120-1107;16-21,1100-1095	1-1,1121-1121[UP5];x-x,1106-1101[BULt]	((((((......((((((((((((((.&.))))))))))))))------))))))	AGGGAAGAUAUUAGAGAAGAAGUGGAU&UUCUAUUUUUUUUCU------UUCCUU	0	0.406851269368754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN23363_c0_g2_1112_TPlot.pdf
TRINITY_DN23363_c0_g2:1113	si_s71	TRINITY_DN23363_c0_g2	1096	1122	1113	-25.70	-17.10	0.665369649805448	13	3-16,1120-1107;17-21,1100-1096	1-2,1122-1121[UP5];x-x,1106-1101[BULt]	(((((......((((((((((((((..&..))))))))))))))------)))))	GGGAAGAUAUUAGAGAAGAAGUGGAUA&CUUCUAUUUUUUUUCU------UUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN23363_c0_g2_1113_TPlot.pdf
TRINITY_DN23363_c0_g2:526	si_a403	TRINITY_DN23363_c0_g2	515	535	526	-22.00	-16.30	0.740909090909091	7.5	2-11,534-525;13-18,523-518	1-1,535-535[UP5];12-12,524-524[SIL];19-21,517-515[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	AAUUAUAGAGAAAGCAAUUCA&AGAAUUGUUUUGUUUAUAUUU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN23363_c0_g2_526_TPlot.pdf
TRINITY_DN23363_c0_g2:529	si_a400	TRINITY_DN23363_c0_g2	518	538	529	-22.80	-16.20	0.710526315789474	9.5	5-14,534-525;16-21,523-518	1-4,538-535[UP5];15-15,524-524[SIL]	((((((.((((((((((....&....)))))))))).))))))	UAUAGAGAAAGCAAUUCAAUA&UAUAGAAUUGUUUUGUUUAUA	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN23363_c0_g2_529_TPlot.pdf
TRINITY_DN23363_c0_g2:531	si_a398	TRINITY_DN23363_c0_g2	520	540	531	-22.40	-15.10	0.674107142857143	5	2-5,539-536;7-16,534-525;18-21,523-520	1-1,540-540[UP5];6-6,535-535[SIL];17-17,524-524[SIL]	((((.((((((((((.((((.&.)))).)))))))))).))))	UAGAGAAAGCAAUUCAAUAUG&AAUAUAGAAUUGUUUUGUUUA	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN23363_c0_g2_531_TPlot.pdf
TRINITY_DN23382_c0_g1:1561	si_a65	TRINITY_DN23382_c0_g1	1550	1570	1561	-27.70	-18.18	0.656317689530686	8.5	1-10,1570-1561;14-21,1557-1550	11-13,1560-1558[SIL]	((((((((...((((((((((&))))))))))...))))))))	GGGACAAUAAUAGAGGAGCGA&UCGCUUCUUUCAAAUUGUUUU	4	0.999999999917865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN23382_c0_g1_1561_TPlot.pdf
TRINITY_DN23382_c0_g1:1713	si_a545	TRINITY_DN23382_c0_g1	1702	1722	1713	-28.10	-18.50	0.658362989323843	7.5	1-1,1722-1722;3-4,1720-1719;6-19,1717-1704	2-2,1721-1721[SIL];5-5,1718-1718[SIL];20-21,1703-1702[UP3]	..((((((((((((((.((.(&).)).))))))))))))))..	UGAGAGAAAUGGAUUGUACGG&CGGUUCAAUCUAUUUCUUUAU	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN23382_c0_g1_1713_TPlot.pdf
TRINITY_DN23382_c0_g1:1715	si_a543	TRINITY_DN23382_c0_g1	1704	1723	1715	-28.70	-19.20	0.668989547038327	8	1-4,1723-1720;8-21,1717-1704	5-7,1719-1718[AILq]	((((((((((((((..-((((&))))...))))))))))))))	AGAGAAAUGGAUUGUA-CGGU&AUCGGUUCAAUCUAUUUCUUU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN23382_c0_g1_1715_TPlot.pdf
TRINITY_DN23382_c0_g1:948	si_s808	TRINITY_DN23382_c0_g1	936	957	948	-28.60	-19.90	0.695804195804196	8.5	1-6,957-952;8-10,950-948;11-18,946-939	7-7,951-951[SIL];x-x,947-947[BULt];19-21,938-936[UP3]	...((((((((.(((.((((((&)))))).)))-))))))))...	AAUAGAAGAGGAUGAGGAAGAU&AUCUUCGUUA-CCUUUUCUUAA	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN23382_c0_g1_948_TPlot.pdf
TRINITY_DN2338_c0_g1:186	si_a792	TRINITY_DN2338_c0_g1	177	195	186	-27.60	-19.20	0.695652173913043	8	1-10,195-186;13-16,184-181;18-21,180-177	11-12,185-185[AILq];17-17,x-x[BULq]	((((-((((.-((((((((((&))))))))))..)))).))))	CGGA-UGGAU-GUGGAAGAAU&AUUUUUCUAUUUUCCAAUCCG	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2338_c0_g1_186_TPlot.pdf
TRINITY_DN2338_c0_g1:187	si_a791	TRINITY_DN2338_c0_g1	178	196	187	-26.50	-18.10	0.683018867924528	7	1-11,196-186;14-17,184-181;19-21,180-178	12-13,185-185[AILq];18-18,x-x[BULq]	(((-((((.-(((((((((((&)))))))))))..)))).)))	GGA-UGGAU-GUGGAAGAAUA&UAUUUUUCUAUUUUCCAAUCC	3	0.999948760723328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN2338_c0_g1_187_TPlot.pdf
TRINITY_DN2338_c0_g1:323	si_a639	TRINITY_DN2338_c0_g1	312	332	323	-23.60	-15.40	0.652542372881356	9.5	1-14,332-319	15-21,318-312[UP3]	.......((((((((((((((&)))))))))))))).......	UUGCGCAAUUCGAAAAGAUCG&CGAUUUUUUUGAGUAAUAUAU	3	0.999999999799254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN2338_c0_g1_323_TPlot.pdf
TRINITY_DN2338_c0_g1:325	si_a637	TRINITY_DN2338_c0_g1	314	334	325	-25.80	-19.40	0.751937984496124	8.5	1-16,334-319	17-21,318-314[UP3]	.....((((((((((((((((&)))))))))))))))).....	GCGCAAUUCGAAAAGAUCGGC&GUCGAUUUUUUUGAGUAAUAU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2338_c0_g1_325_TPlot.pdf
TRINITY_DN2338_c0_g1:326	si_a636	TRINITY_DN2338_c0_g1	315	335	326	-26.30	-19.50	0.741444866920152	8	2-17,334-319	1-1,335-335[UP5];18-21,318-315[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGCAAUUCGAAAAGAUCGGCG&UGUCGAUUUUUUUGAGUAAUA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2338_c0_g1_326_TPlot.pdf
TRINITY_DN2338_c0_g1:327	si_a635	TRINITY_DN2338_c0_g1	316	336	327	-26.10	-19.50	0.747126436781609	9	3-18,334-319	1-2,336-335[UP5];19-21,318-316[UP3]	...((((((((((((((((..&..))))))))))))))))...	GCAAUUCGAAAAGAUCGGCGC&AUGUCGAUUUUUUUGAGUAAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2338_c0_g1_327_TPlot.pdf
TRINITY_DN2338_c0_g1:328	si_a634	TRINITY_DN2338_c0_g1	317	337	328	-26.40	-19.50	0.738636363636364	10	4-19,334-319	1-3,337-335[UP5];20-21,318-317[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAAUUCGAAAAGAUCGGCGCC&UAUGUCGAUUUUUUUGAGUAA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN2338_c0_g1_328_TPlot.pdf
TRINITY_DN2338_c0_g1:329	si_a633	TRINITY_DN2338_c0_g1	318	338	329	-26.40	-19.50	0.738636363636364	11	5-20,334-319	1-4,338-335[UP5];21-21,318-318[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUUCGAAAAGAUCGGCGCCA&UUAUGUCGAUUUUUUUGAGUA	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2338_c0_g1_329_TPlot.pdf
TRINITY_DN2338_c0_g1:457	si_a637	TRINITY_DN2338_c0_g1	446	466	457	-25.80	-17.40	0.674418604651163	12.5	1-4,466-463;7-16,460-451	5-6,462-461[SIL];17-21,450-446[UP3]	.....((((((((((..((((&))))..)))))))))).....	GUCGAGCUCGGAAAAUGCGGC&GUCGAUUUUUUUGAGUAAUAU	2	0.999921044563856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2338_c0_g1_457_TPlot.pdf
TRINITY_DN2338_c0_g1:458	si_a636	TRINITY_DN2338_c0_g1	447	467	458	-26.30	-18.20	0.692015209125475	11	1-5,467-463;8-17,460-451	6-7,462-461[SIL];18-21,450-447[UP3]	....((((((((((..(((((&)))))..))))))))))....	UCGAGCUCGGAAAAUGCGGCA&UGUCGAUUUUUUUGAGUAAUA	2	0.997966876744423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2338_c0_g1_458_TPlot.pdf
TRINITY_DN2338_c0_g1:459	si_a635	TRINITY_DN2338_c0_g1	448	468	459	-26.10	-19.50	0.747126436781609	9.5	1-6,468-463;9-18,460-451	7-8,462-461[SIL];19-21,450-448[UP3]	...((((((((((..((((((&))))))..))))))))))...	CGAGCUCGGAAAAUGCGGCAU&AUGUCGAUUUUUUUGAGUAAU	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2338_c0_g1_459_TPlot.pdf
TRINITY_DN2338_c0_g1:462	si_a632	TRINITY_DN2338_c0_g1	451	471	462	-26.10	-21.30	0.816091954022989	8.5	2-9,470-463;12-21,460-451	1-1,471-471[UP5];10-11,462-461[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	GCUCGGAAAAUGCGGCAUGAG&AUUAUGUCGAUUUUUUUGAGU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2338_c0_g1_462_TPlot.pdf
TRINITY_DN2338_c0_g1:463	si_a631	TRINITY_DN2338_c0_g1	452	472	463	-25.70	-19.90	0.77431906614786	10	3-10,470-463;13-21,460-452	1-2,472-471[UP5];11-12,462-461[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	CUCGGAAAAUGCGGCAUGAGC&UAUUAUGUCGAUUUUUUUGAG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN2338_c0_g1_463_TPlot.pdf
TRINITY_DN2338_c0_g1:465	si_a629	TRINITY_DN2338_c0_g1	454	475	465	-26.30	-18.20	0.692015209125475	10	1-3,475-473;5-12,470-463;15-21,460-454	4-4,472-471[AILt];13-14,462-461[SIL]	(((((((..((((((((..(((&)))-.))))))))..)))))))	CGGAAAAUGCGGCAUGAGCGCG&CGU-AUUAUGUCGAUUUUUUUG	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN2338_c0_g1_465_TPlot.pdf
TRINITY_DN2338_c0_g1:466	si_a628	TRINITY_DN2338_c0_g1	455	474	466	-27.10	-19.20	0.708487084870849	8	1-4,474-471;6-13,470-463;16-21,460-455	5-5,x-x[BULq];14-15,462-461[SIL]	((((((..((((((((-((((&)))).))))))))..))))))	GGAAAAUGCGGCAUGA-GCGC&GCGUAUUAUGUCGAUUUUUUU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN2338_c0_g1_466_TPlot.pdf
TRINITY_DN2340_c0_g1:112	si_a765	TRINITY_DN2340_c0_g1	101	121	112	-30.50	-20.00	0.655737704918033	9	2-13,120-109;16-18,106-104	1-1,121-121[UP5];14-15,108-107[SIL];19-21,103-101[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	UUGGAAGAAGUCGAAGACCCU&UGGGUUUUUGAUUGAUUCAAC	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN2340_c0_g1_112_TPlot.pdf
TRINITY_DN2340_c0_g1:115	si_a762	TRINITY_DN2340_c0_g1	104	124	115	-29.70	-19.60	0.65993265993266	11.5	5-16,120-109;19-21,106-104	1-4,124-121[UP5];17-18,108-107[SIL]	(((..((((((((((((....&....))))))))))))..)))	GAAGAAGUCGAAGACCCUGUA&CUUUGGGUUUUUGAUUGAUUC	4	0.99999999618061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2340_c0_g1_115_TPlot.pdf
TRINITY_DN2340_c0_g1:1584	si_s76	TRINITY_DN2340_c0_g1	1572	1593	1584	-23.60	-15.60	0.661016949152542	14.5	7-11,1587-1583;12-21,1581-1572	1-6,1593-1588[UP5];x-x,1582-1582[BULt]	((((((((((.(((((......&......)))))-))))))))))	GAGAAAGGAACAGAAGCUGCUG&AUUUUUUUUCU-UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2340_c0_g1_1584_TPlot.pdf
TRINITY_DN2340_c0_g1:766	si_s892	TRINITY_DN2340_c0_g1	752	775	766	-29.50	-19.90	0.674576271186441	11.5	5-14,771-762;15-21,758-752	1-4,775-772[UP5];x-x,761-759[BULt]	(((((((...((((((((((....&....))))))))))---)))))))	AUUGAGGCAAAGAAAGCCUGGAGA&UAAAUAGGCUUUCU---CUUCAAU	4	0.999964968133447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN2340_c0_g1_766_TPlot.pdf
TRINITY_DN2341_c0_g1:530	si_a570	TRINITY_DN2341_c0_g1	519	539	530	-31.90	-22.30	0.699059561128527	6	1-8,539-532;11-21,529-519	9-10,531-530[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	UUACAAACAUAGAAUUUAUGG&CCGUGAAUCGUAUGUUUGUAA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN2341_c0_g1_530_TPlot.pdf
TRINITY_DN2341_c0_g1:531	si_a569	TRINITY_DN2341_c0_g1	520	540	531	-34.20	-24.40	0.713450292397661	6	1-9,540-532;12-21,529-520	10-11,531-530[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	UACAAACAUAGAAUUUAUGGG&CCCGUGAAUCGUAUGUUUGUA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN2341_c0_g1_531_TPlot.pdf
TRINITY_DN2341_c0_g1:862	si_a870	TRINITY_DN2341_c0_g1	851	871	862	-24.80	-16.30	0.657258064516129	7.5	4-12,868-860;14-21,858-851	1-3,871-869[UP5];13-13,859-859[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AUUGUAACAAGAUCUUUAUGU&UAUUAAAGAUUUAGUUGCAAU	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN2341_c0_g1_862_TPlot.pdf
TRINITY_DN23434_c0_g1:471	si_s815	TRINITY_DN23434_c0_g1	460	481	471	-25.00	-17.20	0.688	11	4-9,478-473;10-19,471-462	1-3,481-479[UP5];x-x,472-472[BULt];20-21,461-460[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	ACCAUUAUUGAGUAAAGGGGAC&UUACCUUUU-CUUAAUAAUGAA	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN23434_c0_g1_471_TPlot.pdf
TRINITY_DN23438_c0_g1:210	si_a172	TRINITY_DN23438_c0_g1	199	219	210	-31.90	-22.50	0.705329153605016	10	3-17,217-203	1-2,219-218[UP5];18-21,202-199[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCGCUGUUUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	0	0.0344146606019428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN23438_c0_g1_210_TPlot.pdf
TRINITY_DN23456_c0_g1:114	si_s773	TRINITY_DN23456_c0_g1	103	123	114	-23.10	-16.00	0.692640692640693	13.5	6-18,118-106	1-5,123-119[UP5];19-21,105-103[UP3]	...(((((((((((((.....&.....)))))))))))))...	GAAUAUGGCAAUAGUGCAUGA&UUAAUUACUAUUGCUAUAAAA	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN23456_c0_g1_114_TPlot.pdf
TRINITY_DN23456_c0_g1:115	si_a472	TRINITY_DN23456_c0_g1	104	123	115	-21.50	-15.00	0.697674418604651	8	2-7,122-117;9-20,116-105	1-1,123-123[UP5];8-8,x-x[BULq];21-21,104-104[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AAUAUGGCAAUAG-UGCAUGA&AUAUGUAAUUAUUGUUAUAUA	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN23456_c0_g1_115_TPlot.pdf
TRINITY_DN2345_c0_g1:169	si_a883	TRINITY_DN2345_c0_g1	158	178	169	-27.20	-18.50	0.680147058823529	10	1-14,178-165	15-21,164-158[UP3]	.......((((((((((((((&)))))))))))))).......	UACGUUGAUGUUGGUUGCAGC&GUUGCAAUCAAUAUAGUAAUA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN2345_c0_g1_169_TPlot.pdf
TRINITY_DN2345_c0_g1:170	si_a882	TRINITY_DN2345_c0_g1	159	179	170	-27.50	-19.60	0.712727272727273	8.5	1-15,179-165	16-21,164-159[UP3]	......(((((((((((((((&)))))))))))))))......	ACGUUGAUGUUGGUUGCAGCU&AGUUGCAAUCAAUAUAGUAAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a882_TRINITY_DN2345_c0_g1_170_TPlot.pdf
TRINITY_DN2345_c0_g1:171	si_a881	TRINITY_DN2345_c0_g1	160	180	171	-27.80	-19.60	0.705035971223022	8.5	2-16,179-165	1-1,180-180[UP5];17-21,164-160[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CGUUGAUGUUGGUUGCAGCUC&UAGUUGCAAUCAAUAUAGUAA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN2345_c0_g1_171_TPlot.pdf
TRINITY_DN2345_c0_g1:172	si_a880	TRINITY_DN2345_c0_g1	161	181	172	-27.80	-19.60	0.705035971223022	9.5	3-17,179-165	1-2,181-180[UP5];18-21,164-161[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUUGAUGUUGGUUGCAGCUCG&UUAGUUGCAAUCAAUAUAGUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN2345_c0_g1_172_TPlot.pdf
TRINITY_DN2345_c0_g1:174	si_a878	TRINITY_DN2345_c0_g1	163	183	174	-26.70	-19.60	0.734082397003745	11	5-19,179-165	1-4,183-180[UP5];20-21,164-163[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGAUGUUGGUUGCAGCUCGUA&AUUUAGUUGCAAUCAAUAUAG	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN2345_c0_g1_174_TPlot.pdf
TRINITY_DN2345_c0_g1:175	si_a877	TRINITY_DN2345_c0_g1	164	191	175	-27.00	-20.50	0.759259259259259	19	1-5,191-187;6-20,179-165	x-x,186-180[BULt];21-21,164-164[UP3]	.(((((((((((((((.......(((((&)))))-------))))))))))))))).	GAUGUUGGUUGCAGCUCGUACGAGGAUC&GAUUU-------AGUUGCAAUCAAUAUA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN2345_c0_g1_175_TPlot.pdf
TRINITY_DN2345_c0_g1:178	si_a874	TRINITY_DN2345_c0_g1	167	194	178	-26.70	-17.90	0.670411985018727	23	4-8,191-187;9-21,179-167	1-3,194-192[UP5];x-x,186-180[BULt]	(((((((((((((.......(((((...&...)))))-------)))))))))))))	GUUGGUUGCAGCUCGUACGAGGAUCAGA&AAAGAUUU-------AGUUGCAAUCAAU	2	0.954345126081691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN2345_c0_g1_178_TPlot.pdf
TRINITY_DN2345_c0_g1:84	si_s810	TRINITY_DN2345_c0_g1	73	94	84	-27.90	-19.40	0.695340501792115	7.5	1-8,94-87;9-10,85-84;12-19,82-75	x-x,86-86[BULt];11-11,83-83[SIL];20-21,74-73[UP3]	..((((((((.((.((((((((&))))))))-)).))))))))..	UCUUAAGGAAUGGAUGACGAAG&CUUCGUUA-CCUUUUCUUAAUA	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN2345_c0_g1_84_TPlot.pdf
TRINITY_DN2345_c0_g1:85	si_s809	TRINITY_DN2345_c0_g1	74	95	85	-28.50	-21.00	0.736842105263158	6.5	1-9,95-87;10-11,85-84;13-20,82-75	x-x,86-86[BULt];12-12,83-83[SIL];21-21,74-74[UP3]	.((((((((.((.(((((((((&)))))))))-)).)))))))).	CUUAAGGAAUGGAUGACGAAGA&UCUUCGUUA-CCUUUUCUUAAU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN2345_c0_g1_85_TPlot.pdf
TRINITY_DN2345_c1_g1:235	si_a68	TRINITY_DN2345_c1_g1	219	244	235	-25.40	-17.40	0.68503937007874	12.5	1-10,244-235;11-17,229-223;19-20,221-220	x-x,234-230[BULt];18-18,222-222[SIL];21-21,219-219[UP3]	.((.(((((((.....((((((((((&))))))))))-----))))))).)).	GGAUGAACAAUACAGCUUGAAAGAAG&CUUCUUUCAA-----AUUGUUUUUCA	2	0.999973919801513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2345_c1_g1_235_TPlot.pdf
TRINITY_DN2346_c0_g1:1035	si_a134	TRINITY_DN2346_c0_g1	1024	1045	1035	-28.20	-18.72	0.663829787234043	12.5	1-8,1045-1038;12-20,1033-1025	9-11,1037-1034[AILt];21-21,1024-1024[UP3]	.(((((((((....((((((((&))))))))-...))))))))).	CCGAUGGUUGCCAGGCUAUUGC&GCAAUAGU-AAUUAAUCGUUGU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN2346_c0_g1_1035_TPlot.pdf
TRINITY_DN2346_c0_g1:1036	si_a133	TRINITY_DN2346_c0_g1	1025	1046	1036	-28.10	-18.52	0.659074733096085	12	2-9,1045-1038;13-21,1033-1025	1-1,1046-1046[UP5];10-12,1037-1034[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	CGAUGGUUGCCAGGCUAUUGCA&AGCAAUAGU-AAUUAAUCGUUG	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN2346_c0_g1_1036_TPlot.pdf
TRINITY_DN2346_c0_g1:1217	si_s312	TRINITY_DN2346_c0_g1	1206	1226	1217	-29.00	-20.80	0.717241379310345	9	3-16,1224-1211	1-2,1226-1225[UP5];17-21,1210-1206[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACGUUAGAAGGACAGGAUUAC&AAAAUUCUGUCCUUCUUGUUA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2346_c0_g1_1217_TPlot.pdf
TRINITY_DN2346_c0_g1:1220	si_s309	TRINITY_DN2346_c0_g1	1209	1228	1220	-33.80	-22.20	0.656804733727811	7.5	1-3,1228-1226;6-19,1224-1211	4-5,1225-1225[AILq];20-21,1210-1209[UP3]	..((((((((((((((.-(((&)))..))))))))))))))..	UUAGAAGGACAGGAUUA-CGU&GCGAAAAUUCUGUCCUUCUUG	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN2346_c0_g1_1220_TPlot.pdf
TRINITY_DN2346_c0_g1:1221	si_s308	TRINITY_DN2346_c0_g1	1210	1229	1221	-32.80	-22.20	0.676829268292683	8	2-4,1228-1226;7-20,1224-1211	1-1,1229-1229[UP5];5-6,1225-1225[AILq];21-21,1210-1210[UP3]	.((((((((((((((.-(((.&.)))..)))))))))))))).	UAGAAGGACAGGAUUA-CGUU&UGCGAAAAUUCUGUCCUUCUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN2346_c0_g1_1221_TPlot.pdf
TRINITY_DN2346_c0_g1:1222	si_s307	TRINITY_DN2346_c0_g1	1211	1230	1222	-32.90	-22.20	0.674772036474164	9	3-5,1228-1226;8-21,1224-1211	1-2,1230-1229[UP5];6-7,1225-1225[AILq]	((((((((((((((.-(((..&..)))..))))))))))))))	AGAAGGACAGGAUUA-CGUUU&UUGCGAAAAUUCUGUCCUUCU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN2346_c0_g1_1222_TPlot.pdf
TRINITY_DN2346_c0_g1:1223	si_s306	TRINITY_DN2346_c0_g1	1212	1231	1223	-32.30	-21.10	0.653250773993808	11	4-6,1228-1226;9-21,1224-1212	1-3,1231-1229[UP5];7-8,1225-1225[AILq]	(((((((((((((.-(((...&...)))..)))))))))))))	GAAGGACAGGAUUA-CGUUUU&AUUGCGAAAAUUCUGUCCUUC	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN2346_c0_g1_1223_TPlot.pdf
TRINITY_DN2346_c0_g1:1250	si_a405	TRINITY_DN2346_c0_g1	1239	1259	1250	-19.80	-13.00	0.656565656565657	12.5	2-15,1258-1245	1-1,1259-1259[UP5];16-21,1244-1239[UP3]	......((((((((((((((.&.))))))))))))))......	UCACAAAUGGGCAAGACGGUG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2346_c0_g1_1250_TPlot.pdf
TRINITY_DN2346_c0_g1:352	si_a22	TRINITY_DN2346_c0_g1	342	361	352	-23.50	-15.80	0.672340425531915	9	1-11,361-351;13-18,350-345	12-12,x-x[BULq];19-21,344-342[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GUAGGGACU-GAAGUAGAUAG&CUAUUUAUUUUUAGUUCUAAG	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN2346_c0_g1_352_TPlot.pdf
TRINITY_DN2346_c0_g1:353	si_a21	TRINITY_DN2346_c0_g1	343	362	353	-24.30	-16.20	0.666666666666667	8	2-12,361-351;14-19,350-345	1-1,362-362[UP5];13-13,x-x[BULq];20-21,344-343[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UAGGGACU-GAAGUAGAUAGA&CCUAUUUAUUUUUAGUUCUAA	4	0.999998711497521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN2346_c0_g1_353_TPlot.pdf
TRINITY_DN2346_c0_g1:356	si_a782	TRINITY_DN2346_c0_g1	341	366	356	-26.40	-17.20	0.651515151515151	9.5	1-7,366-360;8-15,358-351;16-20,346-342	x-x,359-359[BULt];x-x,350-347[BULt];21-21,341-341[UP3]	.(((((....((((((((.(((((((&)))))))-))))))))----))))).	UGUAGGGACUGAAGUAGAUAGAGUUG&CAACUCU-UCUAUUUU----UCUAUU	3	0.99999999992403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2346_c0_g1_356_TPlot.pdf
TRINITY_DN2346_c0_g1:363	si_a776	TRINITY_DN2346_c0_g1	351	372	363	-27.10	-18.20	0.671586715867159	5	1-5,372-368;7-13,366-360;14-21,358-351	6-6,367-367[SIL];x-x,359-359[BULt]	((((((((.(((((((.(((((&))))).)))))))-))))))))	GAAGUAGAUAGAGUUGUAUUAA&UUGAUUCAACUCU-UCUAUUUU	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN2346_c0_g1_363_TPlot.pdf
TRINITY_DN23471_c0_g1:2456	si_a598	TRINITY_DN23471_c0_g1	2447	2466	2456	-32.30	-21.10	0.653250773993808	6	1-7,2466-2460;8-14,2458-2452;17-20,2451-2448	x-x,2459-2459[BULt];15-16,x-x[BULq];21-21,2447-2447[UP3]	.((((--(((((((.(((((((&)))))))-)))))))..)))).	CGGGG--GCGAAAACUUCUGUC&GACAGAA-UUUUCGCAAUUCCA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN23471_c0_g1_2456_TPlot.pdf
TRINITY_DN23471_c0_g1:6023	si_a869	TRINITY_DN23471_c0_g1	6012	6033	6023	-24.80	-17.60	0.709677419354839	10	2-9,6032-6025;11-19,6022-6014	1-1,6033-6033[UP5];10-10,6024-6023[AILt];20-21,6013-6012[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	AAGCGACUGAAGACUUUGAUGC&UUAUUAAAG-AUUUAGUUGCAA	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN23471_c0_g1_6023_TPlot.pdf
TRINITY_DN23471_c0_g1:6414	si_a739	TRINITY_DN23471_c0_g1	6403	6423	6414	-41.50	-27.50	0.662650602409639	9.5	1-10,6423-6414;12-16,6412-6408;18-18,6406-6406	11-11,6413-6413[SIL];17-17,6407-6407[SIL];19-21,6405-6403[UP3]	...(.(((((.((((((((((&)))))))))).))))).)...	CCGUGGUGGUGAGGGGUGAGG&CUUUACCCCUGGCCAUGAACC	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a739_TRINITY_DN23471_c0_g1_6414_TPlot.pdf
TRINITY_DN23471_c0_g1:6419	si_a734	TRINITY_DN23471_c0_g1	6408	6428	6419	-42.40	-27.70	0.653301886792453	10	3-3,6426-6426;5-15,6424-6414;17-21,6412-6408	1-2,6428-6427[UP5];4-4,6425-6425[SIL];16-16,6413-6413[SIL]	(((((.(((((((((((.(..&..).))))))))))).)))))	GUGGUGAGGGGUGAGGGCGGG&GGCAUCUUUACCCCUGGCCAU	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN23471_c0_g1_6419_TPlot.pdf
TRINITY_DN23471_c0_g2:2106	si_a477	TRINITY_DN23471_c0_g2	2095	2115	2106	-21.50	-14.00	0.651162790697674	10	1-16,2115-2100	17-21,2099-2095[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAGCAUGUAUAGCGGUAGUUG&UAAUUAUUGUUAUAUAGAAUA	4	0.999995070517503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN23471_c0_g2_2106_TPlot.pdf
TRINITY_DN23471_c0_g2:2112	si_a471	TRINITY_DN23471_c0_g2	2101	2121	2112	-21.10	-17.30	0.819905213270142	11	5-21,2117-2101	1-4,2121-2118[UP5]	(((((((((((((((((....&....)))))))))))))))))	GUAUAGCGGUAGUUGCACCUG&AAUAUGUAAUUAUUGUUAUAU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN23471_c0_g2_2112_TPlot.pdf
TRINITY_DN23471_c0_g2:959	si_a723	TRINITY_DN23471_c0_g2	942	968	959	-35.10	-23.20	0.660968660968661	18	2-10,967-959;11-19,952-944	1-1,968-968[UP5];x-x,958-953[BULt];20-21,943-942[UP3]	..(((((((((......(((((((((.&.)))))))))------)))))))))..	GCGAGGUGCUCGUUGGUGAGUAGCGAA&AUCGUUACUC------GGGCAUCUUUA	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN23471_c0_g2_959_TPlot.pdf
TRINITY_DN2347_c0_g1:924	si_s811	TRINITY_DN2347_c0_g1	913	933	924	-26.40	-17.20	0.651515151515151	9.5	1-4,933-930;6-17,928-917	5-5,929-929[SIL];18-21,916-913[UP3]	....((((((((((((.((((&)))).))))))))))))....	CUAAUAGGAAAAGGUGUUGGA&UUCGUUACCUUUUCUUAAUAA	4	0.999999997254913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN2347_c0_g1_924_TPlot.pdf
TRINITY_DN23480_c0_g1:1093	si_s517	TRINITY_DN23480_c0_g1	1082	1102	1093	-24.80	-17.20	0.693548387096774	6	1-10,1102-1093;12-19,1091-1084	11-11,1092-1092[SIL];20-21,1083-1082[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AAGUUUCGAAAUAAGGAUAUG&UAUAUUCUUAAUUCGAAAUCA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s517_TRINITY_DN23480_c0_g1_1093_TPlot.pdf
TRINITY_DN2348_c0_g1:1137	si_a549	TRINITY_DN2348_c0_g1	1127	1146	1137	-29.50	-19.60	0.664406779661017	7.5	2-10,1145-1137;12-20,1136-1128	1-1,1146-1146[UP5];11-11,x-x[BULq];21-21,1127-1127[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	AGAGGUGGAG-GAUGGAUUGU&UCAAUCUAUUUCUUUAUCUCC	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN2348_c0_g1_1137_TPlot.pdf
TRINITY_DN2348_c0_g1:1138	si_a548	TRINITY_DN2348_c0_g1	1128	1147	1138	-27.20	-19.60	0.720588235294118	8.5	3-11,1145-1137;13-21,1136-1128	1-2,1147-1146[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GAGGUGGAG-GAUGGAUUGUU&UUCAAUCUAUUUCUUUAUCUC	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN2348_c0_g1_1138_TPlot.pdf
TRINITY_DN2348_c0_g1:1886	si_a401	TRINITY_DN2348_c0_g1	1875	1896	1886	-22.60	-16.40	0.725663716814159	5.5	1-7,1896-1890;8-21,1888-1875	x-x,1889-1889[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	GUAUGAAUAAAAUAUAUUCUGU&AUAGAAU-UGUUUUGUUUAUAU	2	0.969343840465523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2348_c0_g1_1886_TPlot.pdf
TRINITY_DN2348_c0_g1:357	si_a405	TRINITY_DN2348_c0_g1	341	366	357	-19.80	-14.20	0.717171717171717	12.5	1-12,366-355;13-20,349-342	x-x,354-350[BULt];21-21,341-341[UP3]	.((((((((.....((((((((((((&))))))))))))-----)))))))).	GUGGAUGUAAAAAUAACAAAACAAUU&AAUUGUUUUGUU-----UAUAUUUAA	4	0.999999999099562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2348_c0_g1_357_TPlot.pdf
TRINITY_DN2348_c0_g1:358	si_a404	TRINITY_DN2348_c0_g1	342	367	358	-21.70	-14.40	0.663594470046083	7.5	2-13,366-355;14-21,349-342	1-1,367-367[UP5];x-x,354-350[BULt]	((((((((.....((((((((((((.&.))))))))))))-----))))))))	UGGAUGUAAAAAUAACAAAACAAUUG&GAAUUGUUUUGUU-----UAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2348_c0_g1_358_TPlot.pdf
TRINITY_DN23498_c0_g2:162	si_a548	TRINITY_DN23498_c0_g2	151	171	162	-27.20	-18.40	0.676470588235294	11.5	6-10,166-162;12-21,160-151	1-5,171-167[UP5];11-11,161-161[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GAGAUGAAGAUAUAGAAAAGA&UUCAAUCUAUUUCUUUAUCUC	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN23498_c0_g2_162_TPlot.pdf
TRINITY_DN23498_c0_g2:219	si_s74	TRINITY_DN23498_c0_g2	204	228	219	-25.00	-16.80	0.672	8	1-13,228-216;14-16,212-210;17-21,208-204	x-x,215-213[BULt];x-x,209-209[BULt]	(((((.(((...(((((((((((((&)))))))))))))---)))-)))))	GAAGGUGAGCUCAGAAAAGAAGUGG&CUAUUUUUUUUCU---UUC-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN23498_c0_g2_219_TPlot.pdf
TRINITY_DN23498_c0_g2:262	si_a785	TRINITY_DN23498_c0_g2	251	273	262	-25.90	-19.58	0.755984555984556	10.5	1-9,273-265;12-21,260-251	10-11,264-261[AILt]	((((((((((....(((((((((&)))))))))--..))))))))))	GGAAAUGGGAUGCUAUAGAGGAG&CUCUUCUAU--UUUUCUAUUUUC	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN23498_c0_g2_262_TPlot.pdf
TRINITY_DN23498_c0_g2:265	si_a784	TRINITY_DN23498_c0_g2	252	274	265	-24.70	-19.28	0.780566801619433	10.5	1-10,274-265;13-21,260-252	11-12,264-261[AILt]	(((((((((....((((((((((&))))))))))--..)))))))))	GAAAUGGGAUGCUAUAGAGGAGU&ACUCUUCUAU--UUUUCUAUUUU	0	0.110031498404527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN23498_c0_g2_265_TPlot.pdf
TRINITY_DN23498_c0_g2:266	si_a783	TRINITY_DN23498_c0_g2	253	275	266	-24.70	-18.28	0.740080971659919	10	2-11,274-265;14-21,260-253	1-1,275-275[UP5];12-13,264-261[AILt]	((((((((....((((((((((.&.))))))))))--..))))))))	AAAUGGGAUGCUAUAGAGGAGUG&AACUCUUCUAU--UUUUCUAUUU	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN23498_c0_g2_266_TPlot.pdf
TRINITY_DN2349_c0_g1:17	si_a763	TRINITY_DN2349_c0_g1	6	29	17	-28.80	-19.70	0.684027777777778	10.5	1-9,29-21;10-17,17-10;20-20,7-7	x-x,20-18[BULt];18-19,9-8[SIL];21-21,6-6[UP3]	.(..((((((((...(((((((((&)))))))))---))))))))..).	AGUUUCGAUCAAAGUAAACCCAGA&UUUGGGUUU---UUGAUUGAUUCA	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2349_c0_g1_17_TPlot.pdf
TRINITY_DN2349_c0_g1:21	si_a762	TRINITY_DN2349_c0_g1	7	30	21	-29.70	-19.40	0.653198653198653	10.5	2-10,29-21;11-18,17-10;21-21,7-7	1-1,30-30[UP5];x-x,20-18[BULt];19-20,9-8[SIL]	(..((((((((...(((((((((.&.)))))))))---))))))))..)	GUUUCGAUCAAAGUAAACCCAGAA&CUUUGGGUUU---UUGAUUGAUUC	2	0.999998065340694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2349_c0_g1_21_TPlot.pdf
TRINITY_DN234_c0_g1:135	si_a68	TRINITY_DN234_c0_g1	124	144	135	-25.40	-17.08	0.67244094488189	7.5	2-9,143-136;13-21,132-124	1-1,144-144[UP5];10-12,135-133[SIL]	(((((((((...((((((((.&.))))))))...)))))))))	UGAAGAACACGAUGAAAGAAA&CUUCUUUCAAAUUGUUUUUCA	2	0.99999949553299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN234_c0_g1_135_TPlot.pdf
TRINITY_DN234_c0_g1:1987	si_s528	TRINITY_DN234_c0_g1	1977	1996	1987	-29.40	-20.20	0.687074829931973	7.5	2-12,1995-1985;16-21,1982-1977	1-1,1996-1996[UP5];13-15,1984-1983[AILq]	((((((..-(((((((((((.&.)))))))))))...))))))	CGGGUCUU-GGUGAUUUUGAG&UUCGAAAUCAUUUUUGAUCCG	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN234_c0_g1_1987_TPlot.pdf
TRINITY_DN234_c0_g1:3245	si_s440	TRINITY_DN234_c0_g1	3234	3255	3245	-21.60	-14.70	0.680555555555555	10.5	2-8,3254-3248;11-20,3244-3235	1-1,3255-3255[UP5];9-10,3247-3245[AILt];21-21,3234-3234[UP3]	.((((((((((...(((((((.&.)))))))-..)))))))))).	CUGUUGUAUAUUCUUGUGUGAA&AUUACAUA-UUAUAUAUAACAA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN234_c0_g1_3245_TPlot.pdf
TRINITY_DN234_c0_g1:3246	si_s439	TRINITY_DN234_c0_g1	3235	3256	3246	-21.50	-14.40	0.669767441860465	11.5	3-9,3254-3248;12-21,3244-3235	1-2,3256-3255[UP5];10-11,3247-3245[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	UGUUGUAUAUUCUUGUGUGAAU&AAUUACAUA-UUAUAUAUAACA	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN234_c0_g1_3246_TPlot.pdf
TRINITY_DN234_c0_g1:4292	si_s725	TRINITY_DN234_c0_g1	4281	4300	4292	-33.40	-21.90	0.655688622754491	4.5	1-7,4300-4294;9-15,4293-4287;17-20,4285-4282	8-8,x-x[BULq];16-16,4286-4286[SIL];21-21,4281-4281[UP3]	.((((.(((((((-(((((((&))))))).))))))).)))).	AGCCCCUCUAGAU-AUAUCUU&AAGAUAUUAUCUAGACGGGUG	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s725_TRINITY_DN234_c0_g1_4292_TPlot.pdf
TRINITY_DN234_c0_g1:4779	si_s82	TRINITY_DN234_c0_g1	4768	4789	4779	-28.90	-20.80	0.719723183391003	6.5	2-4,4788-4786;6-9,4784-4781;10-21,4779-4768	1-1,4789-4789[UP5];5-5,4785-4785[SIL];x-x,4780-4780[BULt]	((((((((((((.((((.(((.&.))).))))-))))))))))))	AGGAAGAAGGAAUGGAAUGAAC&UUUCUUUCC-UUUCUUCUUCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN234_c0_g1_4779_TPlot.pdf
TRINITY_DN234_c0_g1:608	si_a450	TRINITY_DN234_c0_g1	596	617	608	-25.20	-18.80	0.746031746031746	7	1-10,617-608;11-17,606-600	x-x,607-607[BULt];18-21,599-596[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	GUCCAUAACAGUCAAUUAUCUC&GAGAUAAUUG-UUGUUAUAUAU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN234_c0_g1_608_TPlot.pdf
TRINITY_DN234_c0_g1:612	si_a446	TRINITY_DN234_c0_g1	600	621	612	-25.50	-19.60	0.768627450980392	6.5	4-14,618-608;15-21,606-600	1-3,621-619[UP5];x-x,607-607[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AUAACAGUCAAUUAUCUCAAGA&AUAUGAGAUAAUUG-UUGUUAU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN234_c0_g1_612_TPlot.pdf
TRINITY_DN23504_c0_g1:20	si_a896	TRINITY_DN23504_c0_g1	10	29	20	-21.60	-16.20	0.75	5.5	1-13,29-17;15-19,16-12	14-14,x-x[BULq];20-21,11-10[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AAAUGUU-CUUGUUAUUGCUA&UAGUAAUAAUAAGUAAUAUAA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN23504_c0_g1_20_TPlot.pdf
TRINITY_DN23504_c0_g1:21	si_a895	TRINITY_DN23504_c0_g1	11	30	21	-21.70	-16.20	0.746543778801843	5.5	2-14,29-17;16-20,16-12	1-1,30-30[UP5];15-15,x-x[BULq];21-21,11-11[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	AAUGUU-CUUGUUAUUGCUAA&AUAGUAAUAAUAAGUAAUAUA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN23504_c0_g1_21_TPlot.pdf
TRINITY_DN23504_c0_g1:23	si_a893	TRINITY_DN23504_c0_g1	13	32	23	-21.70	-14.70	0.67741935483871	8	4-16,29-17;18-21,16-13	1-3,32-30[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	UGUU-CUUGUUAUUGCUAAAA&AUAUAGUAAUAAUAAGUAAUA	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN23504_c0_g1_23_TPlot.pdf
TRINITY_DN2350_c0_g1:374	si_a782	TRINITY_DN2350_c0_g1	363	387	374	-26.40	-18.86	0.714393939393939	14	1-9,387-379;12-20,372-364	10-11,378-373[AILt];21-21,363-363[UP3]	.(((((((((......(((((((((&)))))))))----..))))))))).	UGUAGAGAAAGAAUCUGAAGAGUUG&CAACUCUUC----UAUUUUUCUAUU	2	0.982270976238932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2350_c0_g1_374_TPlot.pdf
TRINITY_DN23515_c0_g1:791	si_s83	TRINITY_DN23515_c0_g1	780	800	791	-30.90	-21.10	0.68284789644013	8.5	2-15,799-786	1-1,800-800[UP5];16-21,785-780[UP3]	......((((((((((((((.&.))))))))))))))......	GGCAACGGAGAAAGGAGAGAG&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN23515_c0_g1_791_TPlot.pdf
TRINITY_DN23515_c0_g1:798	si_s76	TRINITY_DN23515_c0_g1	787	808	798	-23.60	-20.50	0.86864406779661	7.5	2-6,807-803;7-21,801-787	1-1,808-808[UP5];x-x,802-802[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	GAGAAAGGAGAGAGACAAGGAA&AUUUUU-UUUCUUUCCUUUCUU	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN23515_c0_g1_798_TPlot.pdf
TRINITY_DN23515_c0_g2:468	si_s100	TRINITY_DN23515_c0_g2	457	477	468	-33.70	-23.60	0.700296735905044	9	1-4,477-474;6-9,472-469;11-17,467-461	5-5,473-473[SIL];10-10,468-468[SIL];18-21,460-457[UP3]	....(((((((.((((.((((&)))).)))).)))))))....	UCCAUCCAAUCGGAGGGGAAG&CUUCGCUUCGGAUUGGAAAAU	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN23515_c0_g2_468_TPlot.pdf
TRINITY_DN2351_c0_g1:3118	si_a356	TRINITY_DN2351_c0_g1	3107	3126	3118	-26.90	-17.80	0.661710037174721	10	4-7,3123-3120;9-19,3119-3109	1-3,3126-3124[UP5];8-8,x-x[BULq];20-21,3108-3107[UP3]	..(((((((((((-((((...&...)))).)))))))))))..	AACCGAUCAAGAU-GAAUAUA&UUAAUUCUAUUUUGAUCGGAU	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2351_c0_g1_3118_TPlot.pdf
TRINITY_DN2351_c0_g1:3120	si_a354	TRINITY_DN2351_c0_g1	3109	3128	3120	-26.20	-17.80	0.679389312977099	11.5	6-9,3123-3120;11-21,3119-3109	1-5,3128-3124[UP5];10-10,x-x[BULq]	(((((((((((-((((.....&.....)))).)))))))))))	CCGAUCAAGAU-GAAUAUACA&UAUUAAUUCUAUUUUGAUCGG	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN2351_c0_g1_3120_TPlot.pdf
TRINITY_DN2351_c0_g1:3365	si_s91	TRINITY_DN2351_c0_g1	3354	3374	3365	-34.70	-23.00	0.662824207492795	4	1-12,3374-3363;15-20,3360-3355	13-14,3362-3361[SIL];21-21,3354-3354[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	GUCGAGGAAAAGAAGAAGAAA&UUUCUUCUUCUUCGCUUCGGA	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2351_c0_g1_3365_TPlot.pdf
TRINITY_DN2351_c0_g1:3366	si_s90	TRINITY_DN2351_c0_g1	3355	3375	3366	-35.30	-23.00	0.651558073654391	4	2-13,3374-3363;16-21,3360-3355	1-1,3375-3375[UP5];14-15,3362-3361[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UCGAGGAAAAGAAGAAGAAAU&CUUUCUUCUUCUUCGCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2351_c0_g1_3366_TPlot.pdf
TRINITY_DN2351_c0_g1:5879	si_s796	TRINITY_DN2351_c0_g1	5869	5888	5879	-30.30	-22.60	0.745874587458746	8	2-11,5887-5878;15-21,5875-5869	1-1,5888-5888[UP5];12-14,5877-5876[AILq]	(((((((..-((((((((((.&.))))))))))...)))))))	GACGAGGUC-GAGUACGAGCA&AGCUCGUAUUUUAUCUUCGUU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2351_c0_g1_5879_TPlot.pdf
TRINITY_DN2352_c0_g1:2563	si_a412	TRINITY_DN2352_c0_g1	2552	2572	2563	-18.30	-13.50	0.737704918032787	3.5	1-15,2572-2558;17-21,2556-2552	16-16,2557-2557[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	UAUUUUUUUAAAUAUAGAUAG&UUGUUUAUAUUUAAAUAAAUA	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2352_c0_g1_2563_TPlot.pdf
TRINITY_DN2352_c0_g1:2565	si_a410	TRINITY_DN2352_c0_g1	2554	2574	2565	-17.80	-11.60	0.651685393258427	6	2-17,2573-2558;19-21,2556-2554	1-1,2574-2574[UP5];18-18,2557-2557[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	UUUUUUUAAAUAUAGAUAGGC&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999987941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2352_c0_g1_2565_TPlot.pdf
TRINITY_DN2352_c0_g1:2568	si_a17	TRINITY_DN2352_c0_g1	2557	2577	2568	-24.30	-17.90	0.736625514403292	4.5	1-13,2577-2565;15-19,2563-2559	14-14,2564-2564[SIL];20-21,2558-2557[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UUUUAAAUAUAGAUAGGCUUU&AAAGCCUAUUUAUUUUUAGUU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN2352_c0_g1_2568_TPlot.pdf
TRINITY_DN23533_c0_g1:233	si_s820	TRINITY_DN23533_c0_g1	222	242	233	-22.10	-14.60	0.660633484162896	4	2-7,241-236;9-13,234-230;15-21,228-222	1-1,242-242[UP5];8-8,235-235[SIL];14-14,229-229[SIL]	(((((((.(((((.((((((.&.)))))).))))).)))))))	UGUUUUUGAUUAUAAAGAAAU&UUUUCUUAAUAAUGAAAAACA	0	0.0852027945084629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN23533_c0_g1_233_TPlot.pdf
TRINITY_DN2353_c0_g1:882	si_a147	TRINITY_DN2353_c0_g1	871	893	882	-30.40	-19.90	0.654605263157895	11.5	2-4,892-890;6-9,888-885;10-21,882-871	1-1,893-893[UP5];5-5,889-889[SIL];x-x,884-883[BULt]	((((((((((((..((((.(((.&.))).))))--))))))))))))	UGACCUUAGGGCUGGACGCCGAG&AUCGUUGUU--GUUUUAAGGUCA	2	0.999975493323183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN2353_c0_g1_882_TPlot.pdf
TRINITY_DN2353_c0_g1:974	si_s633	TRINITY_DN2353_c0_g1	963	983	974	-37.90	-24.70	0.651715039577836	10	3-10,981-974;12-20,972-964	1-2,983-982[UP5];11-11,973-973[SIL];21-21,963-963[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CGGGCGAGCGACUAUGGAGUG&CUUUUCGUAGGCGUUUGCCCU	2	0.999384461095691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2353_c0_g1_974_TPlot.pdf
TRINITY_DN2353_c0_g1:975	si_s632	TRINITY_DN2353_c0_g1	964	984	975	-38.20	-25.70	0.672774869109948	8	1-2,984-983;4-11,981-974;13-21,972-964	3-3,982-982[SIL];12-12,973-973[SIL]	(((((((((.((((((((.((&)).)))))))).)))))))))	GGGCGAGCGACUAUGGAGUGA&UCUUUUCGUAGGCGUUUGCCC	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN2353_c0_g1_975_TPlot.pdf
TRINITY_DN2353_c0_g3:1179	si_a879	TRINITY_DN2353_c0_g3	1168	1188	1179	-27.40	-19.70	0.718978102189781	8.5	1-10,1188-1179;12-14,1178-1176;15-21,1174-1168	11-11,x-x[BULq];x-x,1175-1175[BULt]	(((((((.(((-((((((((((&)))))))))).)))-)))))))	GCUGUGUCUGG-UGCAGCUGGA&UUUAGUUGCAAUCA-AUAUAGU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN2353_c0_g3_1179_TPlot.pdf
TRINITY_DN2353_c0_g3:636	si_a110	TRINITY_DN2353_c0_g3	625	648	636	-27.80	-19.70	0.70863309352518	15	1-4,648-645;8-21,638-625	5-7,644-639[AILt]	((((((((((((((......((((&))))---...))))))))))))))	AAGACGAGCUCGUGCAGAGCUGUC&GAUA---AAAUACGAGCUUGUUUU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN2353_c0_g3_636_TPlot.pdf
TRINITY_DN2353_c0_g3:637	si_a109	TRINITY_DN2353_c0_g3	626	649	637	-28.50	-20.00	0.701754385964912	15	1-5,649-645;9-21,638-626	6-8,644-639[AILt]	(((((((((((((......(((((&)))))---...)))))))))))))	AGACGAGCUCGUGCAGAGCUGUCU&AGAUA---AAAUACGAGCUUGUUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN2353_c0_g3_637_TPlot.pdf
TRINITY_DN23540_c0_g2:231	si_s69	TRINITY_DN23540_c0_g2	215	240	231	-23.40	-15.30	0.653846153846154	10.5	2-11,239-230;12-17,225-220;18-21,218-215	1-1,240-240[UP5];x-x,229-226[BULt];x-x,219-219[BULt]	((((.((((((....((((((((((.&.))))))))))----))))))-))))	GAAACGAAGAAAUCCAAAUAGAAGUA&AACUUCUAUUU----UUUUUC-UUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN23540_c0_g2_231_TPlot.pdf
TRINITY_DN23540_c0_g2:246	si_s78	TRINITY_DN23540_c0_g2	234	255	246	-26.20	-18.52	0.706870229007634	6.5	1-13,255-243;17-21,238-234	14-16,242-239[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	AGAAGUAGUGGAAAGGAAGAAG&UUUUUUUCUUUCC-UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN23540_c0_g2_246_TPlot.pdf
TRINITY_DN23540_c0_g2:247	si_s77	TRINITY_DN23540_c0_g2	235	256	247	-25.50	-17.52	0.687058823529412	8	2-14,255-243;18-21,238-235	1-1,256-256[UP5];15-17,242-239[AILt]	((((....(((((((((((((.&.)))))))))))))-...))))	GAAGUAGUGGAAAGGAAGAAGC&UUUUUUUUCUUUCC-UUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN23540_c0_g2_247_TPlot.pdf
TRINITY_DN2354_c0_g1:1358	si_s876	TRINITY_DN2354_c0_g1	1347	1371	1358	-24.20	-16.10	0.665289256198347	14	1-6,1371-1366;7-18,1361-1350	x-x,1365-1362[BULt];19-21,1349-1347[UP3]	...((((((((((((....((((((&))))))----))))))))))))...	UAGUAUUUUUGGUUCACACUAGGGC&GUCUUA----GAACUAAAAAUAAAU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN2354_c0_g1_1358_TPlot.pdf
TRINITY_DN2354_c0_g1:149	si_s77	TRINITY_DN2354_c0_g1	138	158	149	-25.50	-16.90	0.662745098039216	4.5	1-12,158-147;14-20,145-139	13-13,146-146[SIL];21-21,138-138[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CAAGAAGGAAGAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2354_c0_g1_149_TPlot.pdf
TRINITY_DN2354_c0_g1:150	si_s76	TRINITY_DN2354_c0_g1	139	159	150	-23.60	-16.90	0.716101694915254	4.5	2-13,158-147;15-21,145-139	1-1,159-159[UP5];14-14,146-146[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGAAGGAAGAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2354_c0_g1_150_TPlot.pdf
TRINITY_DN2354_c0_g1:151	si_s75	TRINITY_DN2354_c0_g1	140	160	151	-24.00	-16.10	0.670833333333333	6	3-14,158-147;16-21,145-140	1-2,160-159[UP5];15-15,146-146[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAGGAAGAGAAAAAGAAAC&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2354_c0_g1_151_TPlot.pdf
TRINITY_DN2354_c0_g1:152	si_s69	TRINITY_DN2354_c0_g1	141	161	152	-23.40	-15.80	0.675213675213675	9	4-7,158-155;9-21,153-141	1-3,161-159[UP5];8-8,154-154[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAGGAAGAGAAAAAGAAACC&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2354_c0_g1_152_TPlot.pdf
TRINITY_DN2355_c0_g1:122	si_s124	TRINITY_DN2355_c0_g1	111	131	122	-27.10	-17.80	0.656826568265683	9.5	5-17,127-115;19-21,113-111	1-4,131-128[UP5];18-18,114-114[SIL]	(((.(((((((((((((....&....))))))))))))).)))	UUGUUUCAGCUCUUUUAAUUA&AAAAUAGAAGAGUUGAAUCAA	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN2355_c0_g1_122_TPlot.pdf
TRINITY_DN2355_c0_g1:401	si_a399	TRINITY_DN2355_c0_g1	390	411	401	-22.60	-15.50	0.685840707964602	9	1-6,411-406;7-8,404-403;10-19,401-392	x-x,405-405[BULt];9-9,402-402[SIL];20-21,391-390[UP3]	..((((((((((.((.((((((&))))))-)).))))))))))..	GAGAACAGAACAUUUACUGUGU&AUAUAG-AAUUGUUUUGUUUAU	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2355_c0_g1_401_TPlot.pdf
TRINITY_DN2355_c0_g1:402	si_a398	TRINITY_DN2355_c0_g1	391	412	402	-22.40	-15.70	0.700892857142857	9	2-7,411-406;8-9,404-403;11-20,401-392	1-1,412-412[UP5];x-x,405-405[BULt];10-10,402-402[SIL];21-21,391-391[UP3]	.((((((((((.((.((((((.&.))))))-)).)))))))))).	AGAACAGAACAUUUACUGUGUA&AAUAUAG-AAUUGUUUUGUUUA	3	0.999913265931978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2355_c0_g1_402_TPlot.pdf
TRINITY_DN2355_c0_g1:551	si_a774	TRINITY_DN2355_c0_g1	541	560	551	-29.20	-20.20	0.691780821917808	9.5	1-9,560-552;12-12,549-549;14-20,548-542	10-11,551-550[SIL];13-13,x-x[BULq];21-21,541-541[UP3]	.(((((((-(..(((((((((&)))))))))..).))))))).	UGUAGAAG-GCGGAGUCGGUC&GAUUGAUUCAACUCUUCUAUU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN2355_c0_g1_551_TPlot.pdf
TRINITY_DN2355_c0_g1:553	si_a772	TRINITY_DN2355_c0_g1	543	562	553	-29.80	-19.80	0.664429530201342	8	2-11,561-552;14-14,549-549;16-21,548-543	1-1,562-562[UP5];12-13,551-550[SIL];15-15,x-x[BULq]	((((((-(..((((((((((.&.))))))))))..).))))))	UAGAAG-GCGGAGUCGGUCAC&UUGAUUGAUUCAACUCUUCUA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN2355_c0_g1_553_TPlot.pdf
TRINITY_DN2355_c0_g1:599	si_a319	TRINITY_DN2355_c0_g1	588	608	599	-22.40	-14.70	0.65625	12.5	6-18,603-591	1-5,608-604[UP5];19-21,590-588[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAAAAAAAGAUCAUGGUUUCG&UUUAUCCAUGAUUUUUUUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2355_c0_g1_599_TPlot.pdf
TRINITY_DN2355_c0_g1:600	si_a318	TRINITY_DN2355_c0_g1	589	609	600	-22.50	-14.70	0.653333333333333	13.5	7-19,603-591	1-6,609-604[UP5];20-21,590-589[UP3]	..(((((((((((((......&......)))))))))))))..	AAAAAAAGAUCAUGGUUUCGA&AUUUAUCCAUGAUUUUUUUAU	2	0.999999999896146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2355_c0_g1_600_TPlot.pdf
TRINITY_DN2355_c0_g1:636	si_a790	TRINITY_DN2355_c0_g1	625	646	636	-25.80	-17.20	0.666666666666667	4	2-6,645-641;7-19,639-627;21-21,625-625	1-1,646-646[UP5];x-x,640-640[BULt];20-20,626-626[SIL]	(.(((((((((((((.(((((.&.)))))-))))))))))))).)	GUUUGGAAAAUAGAACAAAUAA&CUAUUU-UUCUAUUUUCCAAUC	2	0.999783623131415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN2355_c0_g1_636_TPlot.pdf
TRINITY_DN2355_c0_g1:637	si_a789	TRINITY_DN2355_c0_g1	626	647	637	-24.80	-17.20	0.693548387096774	6	3-7,645-641;8-20,639-627	1-2,647-646[UP5];x-x,640-640[BULt];21-21,626-626[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	UUUGGAAAAUAGAACAAAUAAU&UCUAUUU-UUCUAUUUUCCAAU	2	0.999839496768338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2355_c0_g1_637_TPlot.pdf
TRINITY_DN2355_c0_g1:638	si_a788	TRINITY_DN2355_c0_g1	627	648	638	-24.80	-17.10	0.689516129032258	7	4-8,645-641;9-21,639-627	1-3,648-646[UP5];x-x,640-640[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	UUGGAAAAUAGAACAAAUAAUG&UUCUAUUU-UUCUAUUUUCCAA	3	0.999999985327344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2355_c0_g1_638_TPlot.pdf
TRINITY_DN2356_c0_g1:392	si_a548	TRINITY_DN2356_c0_g1	381	403	392	-27.20	-18.30	0.672794117647059	9	2-3,402-401;5-7,399-397;8-21,394-381	1-1,403-403[UP5];4-4,400-400[SIL];x-x,396-395[BULt]	((((((((((((((..(((.((.&.)).)))--))))))))))))))	GAGAUGGAGAAGUACUGAUAGAG&UUCAAUC--UAUUUCUUUAUCUC	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN2356_c0_g1_392_TPlot.pdf
TRINITY_DN2356_c0_g1:453	si_s81	TRINITY_DN2356_c0_g1	442	462	453	-28.90	-20.20	0.698961937716263	5.5	1-5,462-458;7-18,456-445	6-6,457-457[SIL];19-21,444-442[UP3]	...((((((((((((.(((((&))))).))))))))))))...	GUUAGGAGAAAGGAAUGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2356_c0_g1_453_TPlot.pdf
TRINITY_DN2356_c0_g1:456	si_s78	TRINITY_DN2356_c0_g1	445	465	456	-26.20	-20.40	0.778625954198473	7.5	4-8,462-458;10-21,456-445	1-3,465-463[UP5];9-9,457-457[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGGAGAAAGGAAUGAAAAUGG&UUUUUUUCUUUCCUUUCUUCU	4	0.999999928384918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2356_c0_g1_456_TPlot.pdf
TRINITY_DN2356_c0_g1:457	si_s77	TRINITY_DN2356_c0_g1	446	466	457	-25.50	-19.50	0.764705882352941	6.5	1-3,466-464;5-9,462-458;11-21,456-446	4-4,463-463[SIL];10-10,457-457[SIL]	(((((((((((.(((((.(((&))).))))).)))))))))))	GGAGAAAGGAAUGAAAAUGGA&UUUUUUUUCUUUCCUUUCUUC	4	0.999999999451348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2356_c0_g1_457_TPlot.pdf
TRINITY_DN2356_c0_g1:461	si_s69	TRINITY_DN2356_c0_g1	449	469	461	-23.40	-15.30	0.653846153846154	6	2-4,468-466;6-13,465-458;14-21,456-449	1-1,469-469[UP5];5-5,x-x[BULq];x-x,457-457[BULt]	((((((((.((((((((-(((.&.))).))))))))-))))))))	GAAAGGAAUGAAAAUGG-AGUA&AACUUCUAUUUUU-UUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2356_c0_g1_461_TPlot.pdf
TRINITY_DN2356_c0_g1:625	si_s898	TRINITY_DN2356_c0_g1	614	635	625	-30.70	-22.50	0.732899022801303	8.5	1-7,635-629;10-21,625-614	8-9,628-626[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	GUUGGAGUUGAAAAUGAAGGCC&GGCUUUC-UCUUCAAUUUCAAU	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN2356_c0_g1_625_TPlot.pdf
TRINITY_DN23571_c0_g1:1561	si_s87	TRINITY_DN23571_c0_g1	1550	1570	1561	-32.90	-23.80	0.723404255319149	6	1-13,1570-1558;16-21,1555-1550	14-15,1557-1556[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	AAGCGGCUGAGGAGGGAGGAA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999423956054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN23571_c0_g1_1561_TPlot.pdf
TRINITY_DN23571_c0_g1:1569	si_s79	TRINITY_DN23571_c0_g1	1558	1578	1569	-26.20	-17.10	0.652671755725191	16	8-21,1571-1558	1-7,1578-1572[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGAGGGAGGAAGUCUCGCU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN23571_c0_g1_1569_TPlot.pdf
TRINITY_DN23571_c0_g1:1598	si_s55	TRINITY_DN23571_c0_g1	1587	1606	1598	-30.80	-20.30	0.659090909090909	9.5	1-7,1606-1600;9-10,1599-1598;13-20,1595-1588	8-8,x-x[BULq];11-12,1597-1596[SIL];21-21,1587-1587[UP3]	.((((((((..((-(((((((&))))))).))..)))))))).	CGGAGUUGCCUGC-UGAAGUC&GAUUUCAAGUUAGCAACUUCU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN23571_c0_g1_1598_TPlot.pdf
TRINITY_DN23571_c0_g1:1600	si_s53	TRINITY_DN23571_c0_g1	1589	1608	1600	-31.20	-21.60	0.692307692307692	7.5	2-9,1607-1600;11-12,1599-1598;15-21,1595-1589	1-1,1608-1608[UP5];10-10,x-x[BULq];13-14,1597-1596[SIL]	(((((((..((-((((((((.&.)))))))).))..)))))))	GAGUUGCCUGC-UGAAGUCCG&UGGAUUUCAAGUUAGCAACUU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN23571_c0_g1_1600_TPlot.pdf
TRINITY_DN23571_c0_g1:1671	si_a498	TRINITY_DN23571_c0_g1	1657	1679	1671	-33.50	-22.70	0.677611940298507	8.5	1-5,1679-1675;8-15,1673-1666;16-21,1662-1657	6-7,1674-1674[AILq];x-x,1665-1663[BULt]	((((((...((((((((.-(((((&)))))..))))))))---))))))	CGAGGACGAAGACGAAGC-CGACA&UGUCGUUUUUCGUCU---UCCUUG	2	0.99999591753827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN23571_c0_g1_1671_TPlot.pdf
TRINITY_DN23571_c0_g1:1675	si_a494	TRINITY_DN23571_c0_g1	1664	1683	1675	-29.50	-19.70	0.667796610169492	12	5-9,1679-1675;12-21,1673-1664	1-4,1683-1680[UP5];10-11,1674-1674[AILq]	((((((((((.-(((((....&....)))))..))))))))))	GAAGACGAAGC-CGACAAUCA&AAUAUGUCGUUUUUCGUCUUC	2	0.999999239310424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN23571_c0_g1_1675_TPlot.pdf
TRINITY_DN23571_c0_g1:1716	si_s368	TRINITY_DN23571_c0_g1	1705	1727	1716	-40.10	-26.30	0.655860349127182	15.5	6-9,1722-1719;10-21,1716-1705	1-5,1727-1723[UP5];x-x,1718-1717[BULt]	((((((((((((..((((.....&.....))))--))))))))))))	GCGCGUGAGCGGCUUCGGGCUUC&UUGAACCGA--UCGCUCGCGUGU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN23571_c0_g1_1716_TPlot.pdf
TRINITY_DN23571_c0_g1:2017	si_s87	TRINITY_DN23571_c0_g1	1992	2026	2017	-32.90	-21.50	0.653495440729483	31.5	2-12,2025-2015;13-19,2000-1994	1-1,2026-2026[UP5];x-x,2014-2001[BULt];20-21,1993-1992[UP3]	..(((((((..............(((((((((((.&.)))))))))))--------------)))))))..	UUGCGAGGAAGGCGCUCGUCACCAGAAGAAAGGAC&UUCCUUUCUUCU--------------UCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN23571_c0_g1_2017_TPlot.pdf
TRINITY_DN23571_c0_g1:2929	si_s105	TRINITY_DN23571_c0_g1	2918	2954	2929	-30.20	-20.00	0.662251655629139	34	1-7,2954-2948;8-19,2931-2920	x-x,2947-2932[BULt];20-21,2919-2918[UP3]	..((((((((((((................(((((((&)))))))----------------))))))))))))..	AGUCUAUUUUCCAAAAGUGAAUCUGUCCCCUCCGAAG&CUUCGGA----------------UUGGAAAAUAGAAA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s105_TRINITY_DN23571_c0_g1_2929_TPlot.pdf
TRINITY_DN2357_c0_g1:3027	si_a568	TRINITY_DN2357_c0_g1	3016	3042	3027	-36.20	-23.56	0.650828729281768	16.5	2-8,3041-3035;10-21,3027-3016	1-1,3042-3042[UP5];9-9,3034-3028[AILt]	((((((((((((.......(((((((.&.)))))))------.))))))))))))	ACAAGCAUACGACAACGUCUUACGGGU&CCCCGUGA------AUCGUAUGUUUGU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a568_TRINITY_DN2357_c0_g1_3027_TPlot.pdf
TRINITY_DN2357_c0_g1:3506	si_a455	TRINITY_DN2357_c0_g1	3495	3515	3506	-21.10	-14.70	0.696682464454976	11.5	4-16,3512-3500	1-3,3515-3513[UP5];17-21,3499-3495[UP3]	.....(((((((((((((...&...))))))))))))).....	ACCAAGUAUAUGACAACAUCA&AAUUGUUGUUAUAUAUAAUAU	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN2357_c0_g1_3506_TPlot.pdf
TRINITY_DN2357_c0_g1:3507	si_a454	TRINITY_DN2357_c0_g1	3496	3516	3507	-21.30	-14.70	0.690140845070423	12.5	5-17,3512-3500	1-4,3516-3513[UP5];18-21,3499-3496[UP3]	....(((((((((((((....&....)))))))))))))....	CCAAGUAUAUGACAACAUCAA&UAAUUGUUGUUAUAUAUAAUA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN2357_c0_g1_3507_TPlot.pdf
TRINITY_DN2357_c0_g1:3508	si_a453	TRINITY_DN2357_c0_g1	3497	3517	3508	-21.10	-14.70	0.696682464454976	13.5	6-18,3512-3500	1-5,3517-3513[UP5];19-21,3499-3497[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAAGUAUAUGACAACAUCAAG&AUAAUUGUUGUUAUAUAUAAU	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN2357_c0_g1_3508_TPlot.pdf
TRINITY_DN2357_c0_g1:3947	si_a792	TRINITY_DN2357_c0_g1	3934	3956	3947	-27.60	-18.10	0.655797101449275	6	1-13,3956-3944;14-15,3942-3941;18-21,3937-3934	x-x,3943-3943[BULt];16-17,3940-3938[AILt]	((((...((.(((((((((((((&)))))))))))))-))-..))))	CGGAGCAGGAAAAAUAGGGAAAU&AUUUUUCUAUUUU-CC-AAUCCG	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2357_c0_g1_3947_TPlot.pdf
TRINITY_DN2357_c0_g1:4079	si_s633	TRINITY_DN2357_c0_g1	4066	4088	4079	-37.90	-25.50	0.672823218997362	8	1-5,4088-4084;7-17,4082-4072;18-20,4069-4067	6-6,4083-4083[SIL];x-x,4071-4070[BULt];21-21,4066-4066[UP3]	.(((..(((((((((((.(((((&))))).)))))))))))--))).	UGGGAACAGGCGCCUACCGGAAG&CUUUUCGUAGGCGUUUG--CCCU	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2357_c0_g1_4079_TPlot.pdf
TRINITY_DN2357_c0_g1:4080	si_s632	TRINITY_DN2357_c0_g1	4067	4089	4080	-38.20	-26.70	0.698952879581152	7	1-6,4089-4084;8-18,4082-4072;19-21,4069-4067	7-7,4083-4083[SIL];x-x,4071-4070[BULt]	(((..(((((((((((.((((((&)))))).)))))))))))--)))	GGGAACAGGCGCCUACCGGAAGA&UCUUUUCGUAGGCGUUUG--CCC	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN2357_c0_g1_4080_TPlot.pdf
TRINITY_DN2357_c0_g1:4201	si_a777	TRINITY_DN2357_c0_g1	4190	4215	4201	-27.00	-18.00	0.666666666666667	17	1-9,4215-4207;10-18,4201-4193	x-x,4206-4202[BULt];19-21,4192-4190[UP3]	...(((((((((.....(((((((((&)))))))))-----)))))))))...	UCCGAUGGAGGGGAAUCGUUGAGUCA&UGAUUCAAC-----UCUUCUAUUUUU	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2357_c0_g1_4201_TPlot.pdf
TRINITY_DN2357_c0_g1:4207	si_a776	TRINITY_DN2357_c0_g1	4191	4216	4207	-27.10	-18.40	0.678966789667897	16	1-10,4216-4207;11-19,4201-4193	x-x,4206-4202[BULt];20-21,4192-4191[UP3]	..(((((((((.....((((((((((&))))))))))-----)))))))))..	CCGAUGGAGGGGAAUCGUUGAGUCAG&UUGAUUCAAC-----UCUUCUAUUUU	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN2357_c0_g1_4207_TPlot.pdf
TRINITY_DN2357_c0_g1:4217	si_a765	TRINITY_DN2357_c0_g1	4207	4226	4217	-30.50	-23.00	0.754098360655738	6.5	1-8,4226-4219;10-10,4217-4217;12-21,4216-4207	9-9,4218-4218[SIL];11-11,x-x[BULq]	((((((((((-(.((((((((&)))))))).).))))))))))	GUUGAGUCAG-CCAAGACCCA&UGGGUUUUUGAUUGAUUCAAC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN2357_c0_g1_4217_TPlot.pdf
TRINITY_DN23580_c0_g1:2331	si_s79	TRINITY_DN23580_c0_g1	2320	2342	2331	-26.20	-19.48	0.743511450381679	11	2-8,2341-2335;11-21,2330-2320	1-1,2342-2342[UP5];9-10,2334-2331[AILt]	(((((((((((....(((((((.&.)))))))--..)))))))))))	GAGGAGAAAGGUAAUAGAAGAAU&UUUUUUCU--UUCCUUUCUUCUU	3	0.99999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN23580_c0_g1_2331_TPlot.pdf
TRINITY_DN23580_c0_g1:2335	si_s77	TRINITY_DN23580_c0_g1	2322	2344	2335	-25.50	-17.08	0.669803921568627	14.5	4-10,2341-2335;13-21,2330-2322	1-3,2344-2342[UP5];11-12,2334-2331[AILt]	(((((((((....(((((((...&...)))))))--..)))))))))	GGAGAAAGGUAAUAGAAGAAUGA&UUUUUUUUCU--UUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN23580_c0_g1_2335_TPlot.pdf
TRINITY_DN23580_c0_g1:2397	si_a329	TRINITY_DN23580_c0_g1	2381	2406	2397	-29.60	-19.30	0.652027027027027	10.5	2-6,2405-2401;8-18,2399-2389;19-21,2383-2381	1-1,2406-2406[UP5];7-7,2400-2400[SIL];x-x,2388-2384[BULt]	(((.....(((((((((((.(((((.&.))))).)))))))))))-----)))	CGGAAUAUGACGAGGAAUAUGAAGAA&AUUUUUUUAUUCCUUGUC-----CCG	3	0.999999999728028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN23580_c0_g1_2397_TPlot.pdf
TRINITY_DN23580_c0_g1:2400	si_a326	TRINITY_DN23580_c0_g1	2389	2409	2400	-26.20	-17.90	0.683206106870229	11.5	5-9,2405-2401;11-21,2399-2389	1-4,2409-2406[UP5];10-10,2400-2400[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GACGAGGAAUAUGAAGAAGAA&AUGAUUUUUUUAUUCCUUGUC	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN23580_c0_g1_2400_TPlot.pdf
TRINITY_DN23580_c0_g1:3069	si_a449	TRINITY_DN23580_c0_g1	3058	3080	3069	-25.70	-17.10	0.665369649805448	8.5	2-7,3079-3074;8-13,3071-3066;15-20,3064-3059	1-1,3080-3080[UP5];x-x,3073-3072[BULt];14-14,3065-3065[SIL];21-21,3058-3058[UP3]	.((((((.((((((..((((((.&.))))))--)))))).)))))).	AAUAUAAGGACAGUAGUAUCUCU&UGAGAUA--AUUGUUGUUAUAUA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN23580_c0_g1_3069_TPlot.pdf
TRINITY_DN23580_c0_g1:3070	si_a448	TRINITY_DN23580_c0_g1	3059	3081	3070	-25.50	-16.80	0.658823529411765	9.5	3-8,3079-3074;9-14,3071-3066;16-21,3064-3059	1-2,3081-3080[UP5];x-x,3073-3072[BULt];15-15,3065-3065[SIL]	((((((.((((((..((((((..&..))))))--)))))).))))))	AUAUAAGGACAGUAGUAUCUCUA&AUGAGAUA--AUUGUUGUUAUAU	2	0.998491877366458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN23580_c0_g1_3070_TPlot.pdf
TRINITY_DN23585_c0_g1:1414	si_s480	TRINITY_DN23585_c0_g1	1403	1423	1414	-25.00	-17.10	0.684	7.5	1-7,1423-1417;9-12,1415-1412;14-19,1410-1405	8-8,1416-1416[SIL];13-13,1411-1411[SIL];20-21,1404-1403[UP3]	..((((((.((((.(((((((&))))))).)))).))))))..	CAUUGAAUUAGUACGGGAUCC&GGAUCCUAUAUUUAUUUAAAU	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN23585_c0_g1_1414_TPlot.pdf
TRINITY_DN23585_c0_g1:3367	si_a627	TRINITY_DN23585_c0_g1	3356	3378	3367	-29.50	-20.18	0.684067796610169	13	1-5,3378-3374;8-17,3369-3360	6-7,3373-3370[AILt];18-21,3359-3356[UP3]	....((((((((((....(((((&)))))--..))))))))))....	GCUCAAUCGACAUACACCGCGCC&GGCGU--AUUAUGUCGAUUUUUU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN23585_c0_g1_3367_TPlot.pdf
TRINITY_DN23588_c0_g1:103	si_s680	TRINITY_DN23588_c0_g1	92	111	103	-25.10	-16.40	0.653386454183267	8.5	3-9,109-103;11-18,102-95	1-2,111-110[UP5];10-10,x-x[BULq];19-21,94-92[UP3]	...((((((((-(((((((..&..))))))).))))))))...	UUAUAGACUCA-GUUUCUACU&UAUAGAAACAUGAGUUUAAUU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN23588_c0_g1_103_TPlot.pdf
TRINITY_DN23588_c0_g2:764	si_s680	TRINITY_DN23588_c0_g2	753	772	764	-25.10	-16.40	0.653386454183267	8.5	3-9,770-764;11-18,763-756	1-2,772-771[UP5];10-10,x-x[BULq];19-21,755-753[UP3]	...((((((((-(((((((..&..))))))).))))))))...	UUGUAGACUCA-GUUUCUACU&UAUAGAAACAUGAGUUUAAUU	0	0.0988303808644477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN23588_c0_g2_764_TPlot.pdf
TRINITY_DN2358_c0_g1:141	si_s482	TRINITY_DN2358_c0_g1	130	150	141	-21.20	-14.70	0.693396226415094	9.5	2-8,149-143;11-19,140-132	1-1,150-150[UP5];9-10,142-141[SIL];20-21,131-130[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	UGAUUUAAGUAUCUGUGGGAC&AUCCUAUAUUUAUUUAAAUAU	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN2358_c0_g1_141_TPlot.pdf
TRINITY_DN23595_c0_g1:70	si_a788	TRINITY_DN23595_c0_g1	59	82	70	-24.80	-18.90	0.762096774193548	10	1-4,82-79;5-21,75-59	x-x,78-76[BULt]	(((((((((((((((((...((((&))))---)))))))))))))))))	UUGGAGGAUGGGGAAAUUCAAGAA&UUCU---AUUUUUCUAUUUUCCAA	1	0.0490223868836617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN23595_c0_g1_70_TPlot.pdf
TRINITY_DN23595_c0_g1:71	si_a787	TRINITY_DN23595_c0_g1	60	80	71	-26.30	-18.90	0.718631178707224	7.5	1-3,80-78;6-21,75-60	4-5,77-76[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	UGGAGGAUGGGGAAAUUCAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN23595_c0_g1_71_TPlot.pdf
TRINITY_DN23596_c0_g1:57	si_a400	TRINITY_DN23596_c0_g1	46	66	57	-22.80	-15.90	0.697368421052632	10	3-18,64-49	1-2,66-65[UP5];19-21,48-46[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAAACAAGAUAGUUCUGAU&UAUAGAAUUGUUUUGUUUAUA	3	0.999916707456954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN23596_c0_g1_57_TPlot.pdf
TRINITY_DN23596_c0_g1:59	si_a398	TRINITY_DN23596_c0_g1	48	68	59	-22.40	-15.90	0.709821428571429	11.5	5-20,64-49	1-4,68-65[UP5];21-21,48-48[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAACAAGAUAGUUCUGAUGA&AAUAUAGAAUUGUUUUGUUUA	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN23596_c0_g1_59_TPlot.pdf
TRINITY_DN23596_c0_g1:60	si_a397	TRINITY_DN23596_c0_g1	49	69	60	-24.00	-15.60	0.65	12	6-21,64-49	1-5,69-65[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAACAAGAUAGUUCUGAUGAU&GAAUAUAGAAUUGUUUUGUUU	2	0.99992852738258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN23596_c0_g1_60_TPlot.pdf
TRINITY_DN235_c0_g1:534	si_a74	TRINITY_DN235_c0_g1	523	546	534	-22.20	-14.60	0.657657657657658	10.5	1-7,546-540;8-20,536-524	x-x,539-537[BULt];21-21,523-523[UP3]	.(((((((((((((...(((((((&)))))))---))))))))))))).	CAAUAAUGGAAAAUUAUGGUUUGA&UCAAAUU---GUUUUUCAUUAUUA	3	0.999999999968188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN235_c0_g1_534_TPlot.pdf
TRINITY_DN235_c0_g1:535	si_a73	TRINITY_DN235_c0_g1	524	547	535	-21.90	-14.60	0.666666666666667	10.5	2-8,546-540;9-21,536-524	1-1,547-547[UP5];x-x,539-537[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	AAUAAUGGAAAAUUAUGGUUUGAU&UUCAAAUU---GUUUUUCAUUAUU	3	0.99999999998043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN235_c0_g1_535_TPlot.pdf
TRINITY_DN2360_c0_g1:1637	si_a550	TRINITY_DN2360_c0_g1	1626	1646	1637	-30.90	-20.58	0.666019417475728	6	1-6,1646-1641;8-11,1639-1636;15-21,1632-1626	7-7,1640-1640[SIL];12-14,1635-1633[SIL]	(((((((...((((.((((((&)))))).))))...)))))))	GGGAGAUUUCGAAAAAGAUUG&CAAUCUAUUUCUUUAUCUCCC	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN2360_c0_g1_1637_TPlot.pdf
TRINITY_DN2360_c0_g1:1715	si_a636	TRINITY_DN2360_c0_g1	1705	1724	1715	-26.30	-18.00	0.684410646387833	7.5	1-14,1724-1711;16-18,1710-1708	15-15,x-x[BULq];19-21,1707-1705[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	GUCUGC-CAAGAAAGUCGAUA&UGUCGAUUUUUUUGAGUAAUA	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2360_c0_g1_1715_TPlot.pdf
TRINITY_DN2360_c0_g1:2089	si_a554	TRINITY_DN2360_c0_g1	2078	2098	2089	-34.40	-24.70	0.718023255813954	8	1-3,2098-2096;4-9,2094-2089;11-20,2088-2079	x-x,2095-2095[BULt];10-10,x-x[BULq];21-21,2078-2078[UP3]	.((((((((((-((((((.(((&)))-)))))).)))))))))).	UGCGGGGGGAU-GAGAAAUUGG&CUA-UUUCUUUAUCUCCCCGUG	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN2360_c0_g1_2089_TPlot.pdf
TRINITY_DN2360_c0_g1:2092	si_s70	TRINITY_DN2360_c0_g1	2081	2103	2092	-25.80	-17.20	0.666666666666667	10	1-6,2103-2098;7-13,2095-2089;15-21,2087-2081	x-x,2097-2096[BULt];14-14,2088-2088[SIL]	(((((((.(((((((..((((((&))))))--))))))).)))))))	GGGGGGAUGAGAAAUUGGGGAGU&ACUUCU--AUUUUUUUUCUUUCC	2	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2360_c0_g1_2092_TPlot.pdf
TRINITY_DN23614_c0_g1:432	si_s554	TRINITY_DN23614_c0_g1	421	440	432	-25.90	-18.20	0.702702702702703	6	2-6,439-435;8-12,434-430;14-21,428-421	1-1,440-440[UP5];7-7,x-x[BULq];13-13,429-429[SIL]	((((((((.(((((-(((((.&.))))).))))).))))))))	CCCGAGGAAGUUAA-UCUAUG&AAUAGAAUUAAUAUUUUCGGG	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN23614_c0_g1_432_TPlot.pdf
TRINITY_DN23614_c0_g1:630	si_a97	TRINITY_DN23614_c0_g1	619	639	630	-26.00	-19.70	0.757692307692308	12.5	5-17,635-623	1-4,639-636[UP5];18-21,622-619[UP3]	....(((((((((((((....&....)))))))))))))....	AAUAUGUCUUCGUUGCCCGGA&AAAAGGUAACGAAGAUAAAAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN23614_c0_g1_630_TPlot.pdf
TRINITY_DN2361_c0_g1:1029	si_s66	TRINITY_DN2361_c0_g1	1018	1039	1029	-26.30	-17.32	0.658555133079848	10.5	2-9,1038-1031;13-21,1026-1018	1-1,1039-1039[UP5];10-12,1030-1027[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	AGAAAAAGAUUCUGAAGUUGUA&AGCAACUUC-UAUUUUUUUUCU	3	0.999999998807864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2361_c0_g1_1029_TPlot.pdf
TRINITY_DN2361_c0_g1:125	si_s77	TRINITY_DN2361_c0_g1	115	134	125	-25.50	-17.10	0.670588235294118	4	1-14,134-121;17-20,119-116	15-16,120-120[AILq];21-21,115-115[UP3]	.((((.-((((((((((((((&))))))))))))))..)))).	CAAGAC-GGAAAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2361_c0_g1_125_TPlot.pdf
TRINITY_DN2361_c0_g1:1250	si_s69	TRINITY_DN2361_c0_g1	1239	1260	1250	-23.40	-15.80	0.675213675213675	10.5	3-9,1258-1252;10-20,1250-1240	1-2,1260-1259[UP5];x-x,1251-1251[BULt];21-21,1239-1239[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	AGAAGAAAAAGAUGUGGAGGAA&AACUUCUAU-UUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2361_c0_g1_1250_TPlot.pdf
TRINITY_DN2361_c0_g1:1252	si_s68	TRINITY_DN2361_c0_g1	1240	1261	1252	-23.10	-15.60	0.675324675324675	11.5	4-10,1258-1252;11-21,1250-1240	1-3,1261-1259[UP5];x-x,1251-1251[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GAAGAAAAAGAUGUGGAGGAAU&CAACUUCUAU-UUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2361_c0_g1_1252_TPlot.pdf
TRINITY_DN2361_c0_g1:126	si_s76	TRINITY_DN2361_c0_g1	116	135	126	-23.60	-17.10	0.724576271186441	4	2-15,134-121;18-21,119-116	1-1,135-135[UP5];16-17,120-120[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	AAGAC-GGAAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2361_c0_g1_126_TPlot.pdf
TRINITY_DN2361_c0_g1:127	si_s75	TRINITY_DN2361_c0_g1	117	136	127	-24.00	-16.30	0.679166666666667	6	3-16,134-121;19-21,119-117	1-2,136-135[UP5];17-18,120-120[AILq]	(((.-((((((((((((((..&..))))))))))))))..)))	AGAC-GGAAAGAAAAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2361_c0_g1_127_TPlot.pdf
TRINITY_DN2361_c0_g1:129	si_s73	TRINITY_DN2361_c0_g1	118	139	129	-24.00	-16.60	0.691666666666667	8	1-3,139-137;5-18,134-121	4-4,136-135[AILt];19-21,120-118[UP3]	...((((((((((((((..(((&)))-.))))))))))))))...	GACGGAAAGAAAAAGAAAAAGA&UCU-AUUUUUUUUCUUUCCUUU	2	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2361_c0_g1_129_TPlot.pdf
TRINITY_DN2361_c0_g1:130	si_s72	TRINITY_DN2361_c0_g1	119	140	130	-24.10	-16.80	0.697095435684647	8	2-4,139-137;6-19,134-121	1-1,140-140[UP5];5-5,136-135[AILt];20-21,120-119[UP3]	..((((((((((((((..(((.&.)))-.))))))))))))))..	ACGGAAAGAAAAAGAAAAAGAU&UUCU-AUUUUUUUUCUUUCCUU	2	0.999999999999576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2361_c0_g1_130_TPlot.pdf
TRINITY_DN2361_c0_g1:131	si_s71	TRINITY_DN2361_c0_g1	120	141	131	-25.70	-16.80	0.653696498054475	9	3-5,139-137;7-20,134-121	1-2,141-140[UP5];6-6,136-135[AILt];21-21,120-120[UP3]	.((((((((((((((..(((..&..)))-.)))))))))))))).	CGGAAAGAAAAAGAAAAAGAUC&CUUCU-AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2361_c0_g1_131_TPlot.pdf
TRINITY_DN2361_c0_g1:677	si_s78	TRINITY_DN2361_c0_g1	667	686	677	-26.20	-17.10	0.652671755725191	6	1-13,686-674;16-19,672-669	14-15,673-673[AILq];20-21,668-667[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	CCAAGAU-GGAAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2361_c0_g1_677_TPlot.pdf
TRINITY_DN2361_c0_g1:678	si_s77	TRINITY_DN2361_c0_g1	668	687	678	-25.50	-18.00	0.705882352941177	5	1-14,687-674;17-20,672-669	15-16,673-673[AILq];21-21,668-668[UP3]	.((((.-((((((((((((((&))))))))))))))..)))).	CAAGAU-GGAAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2361_c0_g1_678_TPlot.pdf
TRINITY_DN2361_c0_g1:679	si_s76	TRINITY_DN2361_c0_g1	669	688	679	-23.60	-18.00	0.76271186440678	5	2-15,687-674;18-21,672-669	1-1,688-688[UP5];16-17,673-673[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	AAGAU-GGAAAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999999989744052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2361_c0_g1_679_TPlot.pdf
TRINITY_DN2361_c0_g1:680	si_a784	TRINITY_DN2361_c0_g1	669	688	680	-24.70	-16.60	0.672064777327935	7	3-8,686-681;10-21,680-669	1-2,688-687[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	AAGAUGGAAAGA-AGAAGAAA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999677668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2361_c0_g1_680_TPlot.pdf
TRINITY_DN2361_c0_g1:682	si_s73	TRINITY_DN2361_c0_g1	671	692	682	-24.00	-16.50	0.6875	9	1-3,692-690;5-18,687-674	4-4,689-688[AILt];19-21,673-671[UP3]	...((((((((((((((..(((&)))-.))))))))))))))...	GAUGGAAAGAAGAAGAAAAAGA&UCU-AUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2361_c0_g1_682_TPlot.pdf
TRINITY_DN2361_c0_g1:683	si_s72	TRINITY_DN2361_c0_g1	672	693	683	-24.10	-16.70	0.692946058091286	9	2-4,692-690;6-19,687-674	1-1,693-693[UP5];5-5,689-688[AILt];20-21,673-672[UP3]	..((((((((((((((..(((.&.)))-.))))))))))))))..	AUGGAAAGAAGAAGAAAAAGAU&UUCU-AUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2361_c0_g1_683_TPlot.pdf
TRINITY_DN2362_c0_g1:1257	si_s580	TRINITY_DN2362_c0_g1	1246	1267	1257	-24.40	-16.10	0.659836065573771	13	1-6,1267-1262;11-18,1256-1249	7-10,1261-1257[AILt];19-21,1248-1246[UP3]	...((((((((.....((((((&))))))-....))))))))...	CUUUCCAUGAUGCUAGUUAUUC&GAAUAA-AAAAAUCAUGGAUAA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN2362_c0_g1_1257_TPlot.pdf
TRINITY_DN2362_c0_g1:1386	si_s201	TRINITY_DN2362_c0_g1	1376	1396	1386	-33.60	-22.90	0.681547619047619	6.5	1-6,1396-1391;8-17,1388-1379;19-21,1378-1376	7-7,1390-1389[AILt];18-18,x-x[BULq]	(((-((((((((((..((((((&))))))-.)))))))))).)))	ACG-AACUGGUGCAGCUCCAAA&UUUGGA-AUGUACCAGUUGUGU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN2362_c0_g1_1386_TPlot.pdf
TRINITY_DN2362_c0_g1:1388	si_s199	TRINITY_DN2362_c0_g1	1376	1398	1388	-31.20	-23.20	0.743589743589744	7	2-8,1397-1391;10-19,1388-1379;20-21,1377-1376	1-1,1398-1398[UP5];9-9,1390-1389[AILt];x-x,1378-1378[BULt]	((.((((((((((..(((((((.&.)))))))-.))))))))))-))	ACGAACUGGUGCAGCUCCAAAAG&AUUUUGGA-AUGUACCAGUU-GU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN2362_c0_g1_1388_TPlot.pdf
TRINITY_DN2362_c0_g1:1392	si_s196	TRINITY_DN2362_c0_g1	1380	1401	1392	-29.30	-21.80	0.744027303754266	11.5	5-11,1397-1391;13-21,1388-1380	1-4,1401-1398[UP5];12-12,1390-1389[AILt]	(((((((((..(((((((....&....)))))))-.)))))))))	ACUGGUGCAGCUCCAAAAGAUA&AUUAUUUUGGA-AUGUACCAGU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN2362_c0_g1_1392_TPlot.pdf
TRINITY_DN2362_c0_g1:1393	si_s195	TRINITY_DN2362_c0_g1	1381	1402	1393	-30.50	-20.50	0.672131147540984	12.5	6-12,1397-1391;14-21,1388-1381	1-5,1402-1398[UP5];13-13,1390-1389[AILt]	((((((((..(((((((.....&.....)))))))-.))))))))	CUGGUGCAGCUCCAAAAGAUAG&GAUUAUUUUGGA-AUGUACCAG	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s195_TRINITY_DN2362_c0_g1_1393_TPlot.pdf
TRINITY_DN2362_c0_g1:4316	si_s554	TRINITY_DN2362_c0_g1	4305	4329	4316	-25.90	-18.80	0.725868725868726	10	1-8,4329-4322;9-21,4317-4305	x-x,4321-4318[BULt]	(((((((((((((....((((((((&))))))))----)))))))))))))	CUCGGAAAUGUUAAACAAUUCUAUU&AAUAGAAU----UAAUAUUUUCGGG	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN2362_c0_g1_4316_TPlot.pdf
TRINITY_DN2362_c0_g1:4317	si_s553	TRINITY_DN2362_c0_g1	4306	4330	4317	-23.50	-16.10	0.685106382978724	10.5	2-9,4329-4322;10-21,4317-4306	1-1,4330-4330[UP5];x-x,4321-4318[BULt]	((((((((((((....((((((((.&.))))))))----))))))))))))	UCGGAAAUGUUAAACAAUUCUAUUG&AAAUAGAAU----UAAUAUUUUCGG	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN2362_c0_g1_4317_TPlot.pdf
TRINITY_DN2362_c0_g1:4322	si_s552	TRINITY_DN2362_c0_g1	4307	4331	4322	-21.10	-14.90	0.706161137440758	12	3-10,4329-4322;11-21,4317-4307	1-2,4331-4330[UP5];x-x,4321-4318[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	CGGAAAUGUUAAACAAUUCUAUUGU&AAAAUAGAAU----UAAUAUUUUCG	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN2362_c0_g1_4322_TPlot.pdf
TRINITY_DN2362_c0_g1:4416	si_a410	TRINITY_DN2362_c0_g1	4405	4425	4416	-17.80	-13.20	0.741573033707865	8.5	1-17,4425-4409	18-21,4408-4405[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUGUUUUGAAUGUGAAUAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2362_c0_g1_4416_TPlot.pdf
TRINITY_DN2362_c0_g1:4417	si_a409	TRINITY_DN2362_c0_g1	4406	4426	4417	-19.50	-16.30	0.835897435897436	7.5	1-18,4426-4409	19-21,4408-4406[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGUUUUGAAUGUGAAUAAGAC&GUUUUGUUUAUAUUUAAAUAA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2362_c0_g1_4417_TPlot.pdf
TRINITY_DN2362_c0_g1:4419	si_a407	TRINITY_DN2362_c0_g1	4408	4428	4419	-19.80	-16.50	0.833333333333333	8	3-20,4426-4409	1-2,4428-4427[UP5];21-21,4408-4408[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UUUUGAAUGUGAAUAAGACUA&UUGUUUUGUUUAUAUUUAAAU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2362_c0_g1_4419_TPlot.pdf
TRINITY_DN2362_c0_g1:4420	si_a406	TRINITY_DN2362_c0_g1	4409	4429	4420	-19.80	-16.40	0.828282828282828	9	4-21,4426-4409	1-3,4429-4427[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUGAAUGUGAAUAAGACUAG&AUUGUUUUGUUUAUAUUUAAA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2362_c0_g1_4420_TPlot.pdf
TRINITY_DN2362_c0_g1:4421	si_a405	TRINITY_DN2362_c0_g1	4410	4430	4421	-19.80	-15.50	0.782828282828283	10.5	5-21,4426-4410	1-4,4430-4427[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUGAAUGUGAAUAAGACUAGG&AAUUGUUUUGUUUAUAUUUAA	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2362_c0_g1_4421_TPlot.pdf
TRINITY_DN2362_c0_g1:896	si_s553	TRINITY_DN2362_c0_g1	885	905	896	-23.50	-16.20	0.68936170212766	11.5	6-13,900-893;15-21,891-885	1-5,905-901[UP5];14-14,892-892[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	CCGAAAACGUUAGUUCGUAGU&AAAUAGAAUUAAUAUUUUCGG	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN2362_c0_g1_896_TPlot.pdf
TRINITY_DN23636_c0_g1:63	si_a408	TRINITY_DN23636_c0_g1	52	72	63	-20.10	-13.50	0.671641791044776	9.5	1-8,72-65;11-17,62-56	9-10,64-63[SIL];18-21,55-52[UP3]	....(((((((..((((((((&))))))))..)))))))....	AAAAUGAAUAUUUACAGAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999962514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN23636_c0_g1_63_TPlot.pdf
TRINITY_DN23636_c0_g1:65	si_a406	TRINITY_DN23636_c0_g1	54	74	65	-19.80	-15.50	0.782828282828283	8.5	1-10,74-65;13-19,62-56	11-12,64-63[SIL];20-21,55-54[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	AAUGAAUAUUUACAGAACAGU&AUUGUUUUGUUUAUAUUUAAA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN23636_c0_g1_65_TPlot.pdf
TRINITY_DN23636_c0_g2:293	si_a469	TRINITY_DN23636_c0_g2	282	303	293	-21.10	-14.40	0.682464454976303	6	1-5,303-299;7-20,296-283	6-6,298-297[AILt];21-21,282-282[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	UUAACAAUAAUUAUAGAAUUAU&AUAAU-AUGUAAUUAUUGUUAU	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN23636_c0_g2_293_TPlot.pdf
TRINITY_DN23647_c0_g1:1584	si_s790	TRINITY_DN23647_c0_g1	1573	1593	1584	-27.80	-19.20	0.690647482014388	11	4-11,1590-1583;13-18,1581-1576	1-3,1593-1591[UP5];12-12,1582-1582[SIL];19-21,1575-1573[UP3]	...((((((.((((((((...&...)))))))).))))))...	UAGGAAGUAGGAGCUUGUGAU&AAAACAAGCUCGUAUUUUAUC	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN23647_c0_g1_1584_TPlot.pdf
TRINITY_DN23647_c0_g1:1586	si_s788	TRINITY_DN23647_c0_g1	1575	1595	1586	-26.20	-19.20	0.732824427480916	12	6-13,1590-1583;15-20,1581-1576	1-5,1595-1591[UP5];14-14,1582-1582[SIL];21-21,1575-1575[UP3]	.((((((.((((((((.....&.....)))))))).)))))).	GGAAGUAGGAGCUUGUGAUAC&AUAAAACAAGCUCGUAUUUUA	0	0.0188317124608075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN23647_c0_g1_1586_TPlot.pdf
TRINITY_DN2364_c0_g1:1608	si_a503	TRINITY_DN2364_c0_g1	1596	1617	1608	-32.10	-24.90	0.775700934579439	6	1-16,1617-1602;17-18,1600-1599	x-x,1601-1601[BULt];19-21,1598-1596[UP3]	...((.((((((((((((((((&))))))))))))))))-))...	GGCUCGCAAGGAAGGCGAGAAA&UUUUUCGUCUUCCUUG-GAAUG	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN2364_c0_g1_1608_TPlot.pdf
TRINITY_DN2364_c0_g1:1616	si_a495	TRINITY_DN2364_c0_g1	1605	1633	1616	-31.90	-21.70	0.68025078369906	25.5	5-9,1629-1625;10-21,1616-1605	1-4,1633-1630[UP5];x-x,1624-1617[BULt]	((((((((((((........(((((....&....)))))--------))))))))))))	GGAAGGCGAGAAAGCGGAGGGCGACUCUU&AUAUGUCGU--------UUUUCGUCUUCC	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN2364_c0_g1_1616_TPlot.pdf
TRINITY_DN2364_c0_g1:2342	si_s80	TRINITY_DN2364_c0_g1	2332	2351	2342	-28.20	-23.90	0.847517730496454	3	1-13,2351-2339;15-21,2338-2332	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	GAGGAAG-AAGGAAAGGAAAG&UUUUUCUUUCCUUUCUUCUUC	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2364_c0_g1_2342_TPlot.pdf
TRINITY_DN2364_c0_g1:249	si_s639	TRINITY_DN2364_c0_g1	238	260	249	-40.60	-27.30	0.672413793103448	12	1-9,260-252;10-10,249-249;12-17,247-242	x-x,251-250[BULt];11-11,248-248[SIL];18-21,241-238[UP3]	....((((((.(..(((((((((&)))))))))--).))))))....	GCUGCGAGGGGAUCGACGCCUGC&GUAGGCGUU--UGCCCUCGAUAC	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN2364_c0_g1_249_TPlot.pdf
TRINITY_DN2364_c0_g1:847	si_a604	TRINITY_DN2364_c0_g1	835	856	847	-31.60	-21.00	0.664556962025316	10.5	3-9,854-848;11-16,846-841;17-21,839-835	1-2,856-855[UP5];10-10,847-847[SIL];x-x,840-840[BULt]	(((((.((((((.(((((((..&..))))))).))))))-)))))	GUCGGCUUGGGGAUGCGGAGCU&AUUUUCGCAAUUCCAA-UCGAC	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN2364_c0_g1_847_TPlot.pdf
TRINITY_DN2365_c0_g1:2815	si_s1	TRINITY_DN2365_c0_g1	2804	2823	2815	-18.70	-12.80	0.684491978609626	7	1-7,2823-2817;9-19,2816-2806	8-8,x-x[BULq];20-21,2805-2804[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	GUGUGAUAAGUGA-AUAAGAA&UUUUUAUAUUACUUAUUAUUA	4	0.9999998260223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN2365_c0_g1_2815_TPlot.pdf
TRINITY_DN23666_c0_g1:151	si_s661	TRINITY_DN23666_c0_g1	140	160	151	-35.40	-26.90	0.759887005649717	9	4-19,157-142	1-3,160-158[UP5];20-21,141-140[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCGUCAGUUCGAUUCCCCCAU&AUCGGGGGAUCGAAUUGAUUA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN23666_c0_g1_151_TPlot.pdf
TRINITY_DN23669_c0_g1:55	si_a613	TRINITY_DN23669_c0_g1	45	65	55	-35.30	-23.00	0.651558073654391	6.5	2-9,64-57;10-16,55-49;18-19,48-47	1-1,65-65[UP5];x-x,56-56[BULt];17-17,x-x[BULq];20-21,46-45[UP3]	..((-(((((((.((((((((.&.))))))))-))))))).))..	CCAC-CCUGGUCAGAUUGGAAA&AUUCCAAUC-GACUAGGCGUAU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN23669_c0_g1_55_TPlot.pdf
TRINITY_DN23669_c0_g1:57	si_a612	TRINITY_DN23669_c0_g1	46	66	57	-35.10	-23.00	0.655270655270655	7.5	3-10,64-57;11-17,55-49;19-20,48-47	1-2,66-65[UP5];x-x,56-56[BULt];18-18,x-x[BULq];21-21,46-46[UP3]	.((-(((((((.((((((((..&..))))))))-))))))).)).	CAC-CCUGGUCAGAUUGGAAAC&AAUUCCAAUC-GACUAGGCGUA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN23669_c0_g1_57_TPlot.pdf
TRINITY_DN2367_c0_g1:1761	si_a77	TRINITY_DN2367_c0_g1	1749	1770	1761	-22.20	-14.70	0.662162162162162	6	1-14,1770-1757;15-18,1755-1752	x-x,1756-1756[BULt];19-21,1751-1749[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	GAGUAGUAAGUGAAGAACAAUU&AAUUGUUUUUCAUU-AUUAAGA	3	0.99999997079684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN2367_c0_g1_1761_TPlot.pdf
TRINITY_DN2367_c0_g1:1769	si_a69	TRINITY_DN2367_c0_g1	1758	1780	1769	-24.00	-17.70	0.7375	9	3-8,1778-1773;9-21,1770-1758	1-2,1780-1779[UP5];x-x,1772-1771[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	GUGAAGAACAAUUGGUGAAGGUG&UUCUUUCA--AAUUGUUUUUCAU	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2367_c0_g1_1769_TPlot.pdf
TRINITY_DN2367_c0_g1:412	si_a447	TRINITY_DN2367_c0_g1	402	421	412	-25.70	-17.20	0.669260700389105	6	1-11,421-411;13-18,410-405	12-12,x-x[BULq];19-21,404-402[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CUCGACAAU-AUUAUCUCAUA&UAUGAGAUAAUUGUUGUUAUA	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN2367_c0_g1_412_TPlot.pdf
TRINITY_DN23686_c0_g1:1277	si_a786	TRINITY_DN23686_c0_g1	1267	1288	1277	-26.60	-17.60	0.661654135338346	8.5	1-7,1288-1282;8-14,1279-1273;16-21,1272-1267	x-x,1281-1280[BULt];15-15,x-x[BULq]	((((((-(((((((..(((((((&)))))))--))))))).))))))	GGAGAA-AGAAGAGAUUGGAAGA&UCUUCUA--UUUUUCUAUUUUCC	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN23686_c0_g1_1277_TPlot.pdf
TRINITY_DN2368_c0_g1:947	si_s797	TRINITY_DN2368_c0_g1	936	955	947	-30.00	-20.10	0.67	8	2-4,954-952;6-6,950-950;8-21,949-936	1-1,955-955[UP5];5-5,951-951[SIL];7-7,x-x[BULq]	((((((((((((((-(.(((.&.))).).))))))))))))))	UGACGAGGAUGAAG-AGGAGA&GCUCGUAUUUUAUCUUCGUUA	2	0.999665500007058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2368_c0_g1_947_TPlot.pdf
TRINITY_DN23690_c1_g1:45	si_s92	TRINITY_DN23690_c1_g1	33	54	45	-34.90	-23.80	0.681948424068768	4	1-12,54-43;14-21,40-33	13-13,42-41[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AUUUGAAGAAGAAGAAGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	0	0.385403308013684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN23690_c1_g1_45_TPlot.pdf
TRINITY_DN23690_c1_g1:46	si_s91	TRINITY_DN23690_c1_g1	34	55	46	-34.70	-22.90	0.659942363112392	4	2-13,54-43;15-21,40-34	1-1,55-55[UP5];14-14,42-41[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	UUUGAAGAAGAAGAAGAAGAAG&UUUCUUCUUCUUC-GCUUCGGA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN23690_c1_g1_46_TPlot.pdf
TRINITY_DN23690_c1_g1:47	si_s84	TRINITY_DN23690_c1_g1	36	56	47	-32.30	-21.40	0.662538699690402	6.5	1-5,56-52;8-21,49-36	6-7,51-50[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UGAAGAAGAAGAAGAAGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN23690_c1_g1_47_TPlot.pdf
TRINITY_DN2369_c0_g2:2337	si_a865	TRINITY_DN2369_c0_g2	2326	2346	2337	-24.00	-16.80	0.7	5	1-3,2346-2344;5-21,2342-2326	4-4,2343-2343[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	AAUUAAAUUUUUGAUGAGUGG&CCAAUUAUUAAAGAUUUAGUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN2369_c0_g2_2337_TPlot.pdf
TRINITY_DN23701_c2_g1:28	si_a9	TRINITY_DN23701_c2_g1	17	37	28	-29.60	-20.20	0.682432432432432	8	1-3,37-35;6-19,32-19	4-5,34-33[SIL];20-21,18-17[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	CGGAGUAGGCUUUUUCACCAA&UUGAAGAGAAAGCCUAUUUAU	0	0.0363450463411901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN23701_c2_g1_28_TPlot.pdf
TRINITY_DN23701_c2_g1:29	si_a8	TRINITY_DN23701_c2_g1	18	38	29	-29.50	-20.20	0.684745762711864	8	2-4,37-35;7-20,32-19	1-1,38-38[UP5];5-6,34-33[SIL];21-21,18-18[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	GGAGUAGGCUUUUUCACCAAC&AUUGAAGAGAAAGCCUAUUUA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN23701_c2_g1_29_TPlot.pdf
TRINITY_DN2370_c0_g1:1557	si_a705	TRINITY_DN2370_c0_g1	1546	1566	1557	-30.50	-24.00	0.786885245901639	8	1-15,1566-1552	16-21,1551-1546[UP3]	......(((((((((((((((&)))))))))))))))......	UUGGUCUUUGGAAUGUGCCGG&CUGGUACAUUCCAAAAUAAUC	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN2370_c0_g1_1557_TPlot.pdf
TRINITY_DN2370_c0_g2:628	si_s872	TRINITY_DN2370_c0_g2	617	637	628	-30.70	-21.20	0.690553745928339	9	1-13,637-625	14-21,624-617[UP3]	........(((((((((((((&)))))))))))))........	GUGACUAAUUCUAGGACCGGU&ACCGGUCUUAGAACUAAAAAU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN2370_c0_g2_628_TPlot.pdf
TRINITY_DN2370_c0_g3:238	si_a406	TRINITY_DN2370_c0_g3	226	247	238	-19.80	-14.70	0.742424242424242	8	1-10,247-238;12-19,235-228	11-11,237-236[AILt];20-21,227-226[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	UCUGAGUAUAUUACAAAGCAAU&AUUGUUUUGU-UUAUAUUUAAA	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2370_c0_g3_238_TPlot.pdf
TRINITY_DN2370_c0_g3:3299	si_a410	TRINITY_DN2370_c0_g3	3288	3308	3299	-17.80	-13.70	0.769662921348314	4.5	1-13,3308-3296;16-21,3293-3288	14-15,3295-3294[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UUUGUUAUAAUAUGAACAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2370_c0_g3_3299_TPlot.pdf
TRINITY_DN2370_c0_g3:483	si_s71	TRINITY_DN2370_c0_g3	472	494	483	-25.70	-17.90	0.696498054474708	8	1-7,494-488;8-15,485-478;17-20,476-473	x-x,487-486[BULt];16-16,477-477[SIL];21-21,472-472[UP3]	.((((.((((((((..(((((((&)))))))--)))))))).)))).	UGGAAUGAAAAAAGAUGUAGAAG&CUUCUAU--UUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2370_c0_g3_483_TPlot.pdf
TRINITY_DN23714_c0_g1:482	si_a634	TRINITY_DN23714_c0_g1	472	491	482	-26.40	-19.60	0.742424242424243	5	1-14,491-478;16-20,477-473	15-15,x-x[BULq];21-21,472-472[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	CUACUC-AGAAAAUUGACGUG&UAUGUCGAUUUUUUUGAGUAA	1	0.0386563511557859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN23714_c0_g1_482_TPlot.pdf
TRINITY_DN2371_c0_g1:1951	si_s464	TRINITY_DN2371_c0_g1	1939	1960	1951	-33.80	-23.30	0.689349112426036	9	4-10,1957-1951;11-14,1949-1946;16-21,1944-1939	1-3,1960-1958[UP5];x-x,1950-1950[BULt];15-15,1945-1945[SIL]	((((((.((((.(((((((...&...)))))))-)))).))))))	GAUCCGCUGGGUUAUGAGACUA&UUAUCUCAUA-UCCAACGGAUC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s464_TRINITY_DN2371_c0_g1_1951_TPlot.pdf
TRINITY_DN2371_c0_g1:2967	si_a719	TRINITY_DN2371_c0_g1	2957	2976	2967	-34.60	-23.70	0.684971098265896	5.5	2-12,2975-2965;15-21,2963-2957	1-1,2976-2976[UP5];13-14,2964-2964[AILq]	(((((((.-(((((((((((.&.)))))))))))..)))))))	GAUGCCUU-GUAAUGAUUGUG&AAUAAUCGUUACUCGGGCAUC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN2371_c0_g1_2967_TPlot.pdf
TRINITY_DN2371_c0_g1:3035	si_s536	TRINITY_DN2371_c0_g1	3024	3044	3035	-27.70	-19.10	0.689530685920578	8	2-16,3043-3029	1-1,3044-3044[UP5];17-21,3028-3024[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUCGGGUUGGAUCAAGAAUU&CAUUUUUGAUCCGAUCAAAAU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN2371_c0_g1_3035_TPlot.pdf
TRINITY_DN2371_c0_g1:3279	si_s144	TRINITY_DN2371_c0_g1	3263	3288	3279	-33.10	-22.18	0.670090634441088	16.5	1-4,3288-3285;8-12,3281-3277;13-21,3271-3263	5-7,3284-3282[SIL];x-x,3276-3272[BULt]	(((((((((.....(((((...((((&))))...)))))-----)))))))))	GACCUCCUUCCAGCUGGGUGGAUGAU&AUCAAAAACCCA-----AAGGAGGUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s144_TRINITY_DN2371_c0_g1_3279_TPlot.pdf
TRINITY_DN2371_c0_g1:3745	si_a413	TRINITY_DN2371_c0_g1	3734	3754	3745	-18.40	-12.00	0.652173913043478	13.5	2-15,3753-3740	1-1,3754-3754[UP5];16-21,3739-3734[UP3]	......((((((((((((((.&.))))))))))))))......	UAUUCAGUUUGGGUGUGAGCU&UGUUUAUAUUUAAAUAAAUAU	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN2371_c0_g1_3745_TPlot.pdf
TRINITY_DN2371_c0_g1:3747	si_a411	TRINITY_DN2371_c0_g1	3736	3756	3747	-17.90	-12.00	0.670391061452514	15	4-17,3753-3740	1-3,3756-3754[UP5];18-21,3739-3736[UP3]	....((((((((((((((...&...))))))))))))))....	UUCAGUUUGGGUGUGAGCUUA&UUUGUUUAUAUUUAAAUAAAU	2	0.999995545908048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2371_c0_g1_3747_TPlot.pdf
TRINITY_DN2371_c0_g1:7510	si_s672	TRINITY_DN2371_c0_g1	7499	7519	7510	-27.10	-18.90	0.697416974169742	4.5	1-16,7519-7504;18-20,7502-7500	17-17,7503-7503[SIL];21-21,7499-7499[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	ACAUUUUUUUAUAGUCAGUUC&GAAUUGAUUAUAGAAACAUGA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s672_TRINITY_DN2371_c0_g1_7510_TPlot.pdf
TRINITY_DN2371_c0_g1:8157	si_a280	TRINITY_DN2371_c0_g1	8146	8166	8157	-32.10	-21.20	0.660436137071651	7.5	2-10,8165-8157;12-18,8155-8149	1-1,8166-8166[UP5];11-11,8156-8156[SIL];19-21,8148-8146[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	UUUUUCAAGCAGUCUUUUCGG&ACGAAAAGAUCGCUUGGAUUU	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN2371_c0_g1_8157_TPlot.pdf
TRINITY_DN2371_c0_g1:8158	si_a279	TRINITY_DN2371_c0_g1	8147	8167	8158	-32.50	-21.20	0.652307692307692	8.5	3-11,8165-8157;13-19,8155-8149	1-2,8167-8166[UP5];12-12,8156-8156[SIL];20-21,8148-8147[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	UUUUCAAGCAGUCUUUUCGGC&UACGAAAAGAUCGCUUGGAUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN2371_c0_g1_8158_TPlot.pdf
TRINITY_DN2372_c0_g1:624	si_a400	TRINITY_DN2372_c0_g1	613	633	624	-22.80	-16.40	0.719298245614035	8.5	2-18,632-616	1-1,633-633[UP5];19-21,615-613[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUCAGACAAGACGAUUUUGUU&UAUAGAAUUGUUUUGUUUAUA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2372_c0_g1_624_TPlot.pdf
TRINITY_DN2372_c0_g1:626	si_a398	TRINITY_DN2372_c0_g1	615	635	626	-22.40	-16.40	0.732142857142857	10	4-20,632-616	1-3,635-633[UP5];21-21,615-615[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAGACAAGACGAUUUUGUUUA&AAUAUAGAAUUGUUUUGUUUA	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2372_c0_g1_626_TPlot.pdf
TRINITY_DN23737_c0_g1:17	si_s60	TRINITY_DN23737_c0_g1	6	30	17	-28.20	-18.60	0.659574468085106	13	1-7,30-24;8-16,19-11	x-x,23-20[BULt];17-21,10-6[UP3]	.....(((((((((....(((((((&)))))))----))))))))).....	CGCCAAGAAGUUGCGAUUUAACUUG&CAAGUUA----GCAACUUCUAUUUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN23737_c0_g1_17_TPlot.pdf
TRINITY_DN2373_c0_g1:552	si_a464	TRINITY_DN2373_c0_g1	536	561	552	-19.60	-14.60	0.744897959183673	11.5	1-11,561-551;12-21,545-536	x-x,550-546[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	GGUAAUUGCAGGACCUAUUAUAUAUA&UAUAUAUAAUA-----UGUAAUUAUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN2373_c0_g1_552_TPlot.pdf
TRINITY_DN2373_c0_g1:828	si_s253	TRINITY_DN2373_c0_g1	815	837	828	-29.50	-19.20	0.650847457627119	10.5	4-14,834-824;15-19,821-817	1-3,837-835[UP5];x-x,823-822[BULt];20-21,816-815[UP3]	..(((((..(((((((((((...&...)))))))))))--)))))..	AAGAGUGUCAUAUAUUGGGAUGU&AUUUCCCGAUAUAU--UACUCAA	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN2373_c0_g1_828_TPlot.pdf
TRINITY_DN2374_c0_g1:107	si_s668	TRINITY_DN2374_c0_g1	96	117	107	-28.20	-18.40	0.652482269503546	5.5	1-9,117-109;10-20,107-97	x-x,108-108[BULt];21-21,96-96[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	CUUUUUAUAAUUAAAUUCGGUC&GAUCGAAUU-GAUUAUAGAAAC	0	0.0353803363546537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s668_TRINITY_DN2374_c0_g1_107_TPlot.pdf
TRINITY_DN2374_c0_g2:210	si_a312	TRINITY_DN2374_c0_g2	198	218	210	-31.20	-20.50	0.657051282051282	6	1-8,218-211;11-16,209-204;17-21,202-198	9-10,210-210[AILq];x-x,203-203[BULt]	(((((.((((((.-((((((((&))))))))..))))))-)))))	AAAUCUAUGGAUU-AUUCAAGC&GCUUGGAUUUAUCCAU-GAUUU	2	0.997836334218218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN2374_c0_g2_210_TPlot.pdf
TRINITY_DN2374_c0_g2:306	si_s73	TRINITY_DN2374_c0_g2	291	315	306	-24.00	-16.30	0.679166666666667	11	1-14,315-302;15-18,297-294	x-x,301-298[BULt];19-21,293-291[UP3]	...((((....((((((((((((((&))))))))))))))----))))...	CGUGGAACGGCAGAAAAGGAGUGGA&UCUAUUUUUUUUCU----UUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2374_c0_g2_306_TPlot.pdf
TRINITY_DN2374_c0_g2:307	si_s72	TRINITY_DN2374_c0_g2	292	316	307	-24.10	-16.50	0.684647302904564	11	2-15,315-302;16-19,297-294	1-1,316-316[UP5];x-x,301-298[BULt];20-21,293-292[UP3]	..((((....((((((((((((((.&.))))))))))))))----))))..	GUGGAACGGCAGAAAAGGAGUGGAU&UUCUAUUUUUUUUCU----UUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2374_c0_g2_307_TPlot.pdf
TRINITY_DN2374_c0_g2:373	si_a354	TRINITY_DN2374_c0_g2	363	382	373	-26.20	-17.30	0.66030534351145	6.5	3-16,380-367;18-20,366-364	1-2,382-381[UP5];17-17,x-x[BULq];21-21,363-363[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	UCGA-CAGAAUAGGAUUAAAU&UAUUAAUUCUAUUUUGAUCGG	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN2374_c0_g2_373_TPlot.pdf
TRINITY_DN2374_c0_g2:374	si_a353	TRINITY_DN2374_c0_g2	364	383	374	-24.00	-16.30	0.679166666666667	7.5	4-17,380-367;19-21,366-364	1-3,383-381[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	CGA-CAGAAUAGGAUUAAAUU&AUAUUAAUUCUAUUUUGAUCG	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN2374_c0_g2_374_TPlot.pdf
TRINITY_DN2374_c0_g2:376	si_a351	TRINITY_DN2374_c0_g2	365	385	376	-20.50	-13.70	0.668292682926829	12.5	6-19,380-367	1-5,385-381[UP5];20-21,366-365[UP3]	..((((((((((((((.....&.....))))))))))))))..	GACAGAAUAGGAUUAAAUUAG&AAAUAUUAAUUCUAUUUUGAU	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2374_c0_g2_376_TPlot.pdf
TRINITY_DN2374_c0_g2:377	si_a350	TRINITY_DN2374_c0_g2	366	386	377	-20.30	-13.70	0.67487684729064	13.5	7-20,380-367	1-6,386-381[UP5];21-21,366-366[UP3]	.((((((((((((((......&......)))))))))))))).	ACAGAAUAGGAUUAAAUUAGU&AAAAUAUUAAUUCUAUUUUGA	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN2374_c0_g2_377_TPlot.pdf
TRINITY_DN23774_c0_g1:133	si_s1	TRINITY_DN23774_c0_g1	122	142	133	-18.70	-12.60	0.67379679144385	8	1-5,142-138;7-18,136-125	6-6,137-137[SIL];19-21,124-122[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CCUUAAUAAGUGAUGCGAAAA&UUUUUAUAUUACUUAUUAUUA	4	0.999999998610957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN23774_c0_g1_133_TPlot.pdf
TRINITY_DN23774_c0_g1:567	si_a113	TRINITY_DN23774_c0_g1	556	576	567	-26.20	-19.20	0.732824427480916	8	4-13,573-564;15-21,562-556	1-3,576-574[UP5];14-14,563-563[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	UAUAAAAGAAGUUCGUGUGGC&AAAAUACGAGCUUGUUUUAUA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN23774_c0_g1_567_TPlot.pdf
TRINITY_DN2377_c1_g1:15	si_s89	TRINITY_DN2377_c1_g1	5	24	15	-35.30	-24.80	0.702549575070822	5	1-15,24-10;18-20,8-6	16-17,9-9[AILq];21-21,5-5[UP3]	.(((.-(((((((((((((((&)))))))))))))))..))).	AGAAA-GAAGAGGAAGAGAGG&CCUUUCUUCUUCUUCGCUUCG	2	0.999904838464018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2377_c1_g1_15_TPlot.pdf
TRINITY_DN2377_c1_g1:16	si_s88	TRINITY_DN2377_c1_g1	6	25	16	-34.80	-24.40	0.701149425287356	5	2-16,24-10;19-21,8-6	1-1,25-25[UP5];17-18,9-9[AILq]	(((.-(((((((((((((((.&.)))))))))))))))..)))	GAAA-GAAGAGGAAGAGAGGC&UCCUUUCUUCUUCUUCGCUUC	2	0.99997118933767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2377_c1_g1_16_TPlot.pdf
TRINITY_DN2377_c1_g1:17	si_s69	TRINITY_DN2377_c1_g1	6	26	17	-23.40	-18.10	0.773504273504274	8.5	3-7,24-20;9-21,18-6	1-2,26-25[UP5];8-8,19-19[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGAAGAGGAAGAGAGGCA&AACUUCUAUUUUUUUUCUUUC	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2377_c1_g1_17_TPlot.pdf
TRINITY_DN2377_c1_g1:18	si_s86	TRINITY_DN2377_c1_g1	7	27	18	-32.90	-23.40	0.711246200607903	9.5	4-18,24-10	1-3,27-25[UP5];19-21,9-7[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAGAAGAGGAAGAGAGGCAA&UUUCCUUUCUUCUUCUUCGCU	2	0.999980412043275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2377_c1_g1_18_TPlot.pdf
TRINITY_DN2377_c1_g1:19	si_s85	TRINITY_DN2377_c1_g1	8	28	19	-33.80	-25.80	0.763313609467456	5.5	1-3,28-26;5-19,24-10	4-4,25-25[SIL];20-21,9-8[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AAGAAGAGGAAGAGAGGCAAG&CUUUCCUUUCUUCUUCUUCGC	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2377_c1_g1_19_TPlot.pdf
TRINITY_DN2377_c1_g1:20	si_s84	TRINITY_DN2377_c1_g1	9	29	20	-32.30	-27.40	0.848297213622291	4.5	1-4,29-26;6-20,24-10	5-5,25-25[SIL];21-21,9-9[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	AGAAGAGGAAGAGAGGCAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2377_c1_g1_20_TPlot.pdf
TRINITY_DN2377_c1_g1:21	si_s83	TRINITY_DN2377_c1_g1	10	30	21	-30.90	-27.90	0.902912621359223	3.5	1-5,30-26;7-21,24-10	6-6,25-25[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GAAGAGGAAGAGAGGCAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2377_c1_g1_21_TPlot.pdf
TRINITY_DN2377_c1_g1:23	si_s81	TRINITY_DN2377_c1_g1	12	32	23	-28.90	-25.60	0.885813148788927	3.5	1-7,32-26;9-21,24-12	8-8,25-25[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	AGAGGAAGAGAGGCAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2377_c1_g1_23_TPlot.pdf
TRINITY_DN2377_c1_g1:24	si_s80	TRINITY_DN2377_c1_g1	13	33	24	-28.20	-24.70	0.875886524822695	3.5	1-8,33-26;10-21,24-13	9-9,25-25[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	GAGGAAGAGAGGCAAGAAAAG&UUUUUCUUUCCUUUCUUCUUC	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2377_c1_g1_24_TPlot.pdf
TRINITY_DN2377_c1_g1:25	si_s79	TRINITY_DN2377_c1_g1	14	34	25	-26.20	-21.90	0.83587786259542	5	2-9,33-26;11-21,24-14	1-1,34-34[UP5];10-10,25-25[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	AGGAAGAGAGGCAAGAAAAGG&UUUUUUCUUUCCUUUCUUCUU	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2377_c1_g1_25_TPlot.pdf
TRINITY_DN2377_c1_g1:26	si_s78	TRINITY_DN2377_c1_g1	15	35	26	-26.20	-22.70	0.866412213740458	5	1-10,35-26;12-21,24-15	11-11,25-25[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	GGAAGAGAGGCAAGAAAAGGA&UUUUUUUCUUUCCUUUCUUCU	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2377_c1_g1_26_TPlot.pdf
TRINITY_DN2377_c1_g1:27	si_s77	TRINITY_DN2377_c1_g1	16	36	27	-25.50	-22.50	0.882352941176471	4.5	1-11,36-26;13-21,24-16	12-12,25-25[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GAAGAGAGGCAAGAAAAGGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2377_c1_g1_27_TPlot.pdf
TRINITY_DN2377_c1_g1:28	si_s76	TRINITY_DN2377_c1_g1	17	37	28	-23.60	-19.30	0.817796610169491	4.5	2-12,36-26;14-21,24-17	1-1,37-37[UP5];13-13,25-25[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	AAGAGAGGCAAGAAAAGGAAG&AUUUUUUUUCUUUCCUUUCUU	2	0.99870110772865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2377_c1_g1_28_TPlot.pdf
TRINITY_DN2377_c1_g1:29	si_s75	TRINITY_DN2377_c1_g1	18	38	29	-24.00	-18.40	0.766666666666667	6.5	3-13,36-26;15-21,24-18	1-2,38-37[UP5];14-14,25-25[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AGAGAGGCAAGAAAAGGAAGA&UAUUUUUUUUCUUUCCUUUCU	2	0.999981821528095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2377_c1_g1_29_TPlot.pdf
TRINITY_DN2377_c1_g1:30	si_s74	TRINITY_DN2377_c1_g1	19	40	30	-25.00	-17.40	0.696	7.5	1-2,40-39;4-14,36-26;16-21,24-19	3-3,38-37[AILt];15-15,25-25[SIL]	((((((.(((((((((((..((&))-.))))))))))).))))))	GAGAGGCAAGAAAAGGAAGAAG&CU-AUUUUUUUUCUUUCCUUUC	2	0.999999999950784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2377_c1_g1_30_TPlot.pdf
TRINITY_DN2377_c1_g1:31	si_s73	TRINITY_DN2377_c1_g1	20	41	31	-24.00	-15.80	0.658333333333333	7.5	1-3,41-39;5-15,36-26;17-21,24-20	4-4,38-37[AILt];16-16,25-25[SIL]	(((((.(((((((((((..(((&)))-.))))))))))).)))))	AGAGGCAAGAAAAGGAAGAAGA&UCU-AUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2377_c1_g1_31_TPlot.pdf
TRINITY_DN2377_c1_g1:346	si_a43	TRINITY_DN2377_c1_g1	335	355	346	-42.30	-27.50	0.650118203309693	9.5	4-5,352-351;8-21,348-335	1-3,355-353[UP5];6-7,350-349[SIL]	((((((((((((((..((...&...))..))))))))))))))	UCGAUUCCUAGACCAUCCUGC&ACCGGUAGGUCUAGGAGUCGA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN2377_c1_g1_346_TPlot.pdf
TRINITY_DN2377_c1_g1:51	si_s77	TRINITY_DN2377_c1_g1	34	60	51	-25.50	-17.70	0.694117647058824	12.5	1-11,60-50;12-17,44-39;18-21,37-34	x-x,49-45[BULt];x-x,38-38[BULt]	((((.((((((.....(((((((((((&)))))))))))-----))))))-))))	GAAGAAGAGGAACAAAAAGAAAAAGAA&UUUUUUUUCUU-----UCCUUU-CUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2377_c1_g1_51_TPlot.pdf
TRINITY_DN2377_c1_g1:66	si_s68	TRINITY_DN2377_c1_g1	55	75	66	-23.10	-16.10	0.696969696969697	8.5	4-8,72-68;10-21,66-55	1-3,75-73[UP5];9-9,67-67[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAAGAAAAGAGAGAGAAGGAA&CAACUUCUAUUUUUUUUCUUU	2	0.999999866811619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2377_c1_g1_66_TPlot.pdf
TRINITY_DN2377_c1_g1:70	si_s75	TRINITY_DN2377_c1_g1	57	79	70	-24.00	-16.90	0.704166666666667	5	1-15,79-65;16-19,63-60;20-21,58-57	x-x,64-64[BULt];x-x,59-59[BULt]	((.((((.(((((((((((((((&)))))))))))))))-))))-))	AGAAAAGAGAGAGAAGGAAAAUG&UAUUUUUUUUCUUUC-CUUU-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2377_c1_g1_70_TPlot.pdf
TRINITY_DN2377_c1_g1:71	si_s74	TRINITY_DN2377_c1_g1	59	80	71	-25.00	-16.90	0.676	6.5	2-16,79-65;17-20,63-60	1-1,80-80[UP5];x-x,64-64[BULt];21-21,59-59[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	AAAAGAGAGAGAAGGAAAAUGA&CUAUUUUUUUUCUUUC-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2377_c1_g1_71_TPlot.pdf
TRINITY_DN2377_c1_g1:73	si_s76	TRINITY_DN2377_c1_g1	61	82	73	-23.60	-17.80	0.754237288135593	5.5	1-4,82-79;6-14,77-69;15-21,67-61	5-5,78-78[SIL];x-x,68-68[BULt]	(((((((.(((((((((.((((&)))).)))))))))-)))))))	AAGAGAGAGAAGGAAAAUGAAU&AUUUUUUUUCUUUC-CUUUCUU	2	0.999999999442638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2377_c1_g1_73_TPlot.pdf
TRINITY_DN2377_c1_g1:81	si_a69	TRINITY_DN2377_c1_g1	70	90	81	-24.00	-15.80	0.658333333333333	6.5	1-9,90-82;11-19,80-72	10-10,81-81[SIL];20-21,71-70[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAGGAAAAUGAAUUGAAAGAG&UUCUUUCAAAUUGUUUUUCAU	2	0.99999997609241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2377_c1_g1_81_TPlot.pdf
TRINITY_DN2377_c1_g1:83	si_a67	TRINITY_DN2377_c1_g1	72	91	83	-27.20	-17.70	0.650735294117647	5.5	1-3,91-89;5-11,88-82;13-21,80-72	4-4,x-x[BULq];12-12,81-81[SIL]	(((((((((.(((((((-(((&))).))))))).)))))))))	GGAAAAUGAAUUGAAAG-AGC&GCUUCUUUCAAAUUGUUUUUC	2	0.999999999391901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2377_c1_g1_83_TPlot.pdf
TRINITY_DN2378_c0_g1:25	si_a6	TRINITY_DN2378_c0_g1	11	34	25	-29.10	-20.02	0.687972508591065	16.5	5-11,30-24;14-21,18-11	1-4,34-31[UP5];12-13,23-19[AILt]	((((((((.....(((((((....&....)))))))---..))))))))	GAUAGGCUGCGAGCUCUUCACUUC&AAAUUGAAGAG---AAAGCCUAUU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN2378_c0_g1_25_TPlot.pdf
TRINITY_DN2378_c0_g1:3772	si_a145	TRINITY_DN2378_c0_g1	3762	3781	3772	-28.10	-19.50	0.693950177935943	11	4-10,3778-3772;12-21,3771-3762	1-3,3781-3779[UP5];11-11,x-x[BULq]	((((((((((-(((((((...&...))))))).))))))))))	GCCUUGGAGC-AUAGCGAGGC&UAAUCGUUGUUGUUUUAAGGU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN2378_c0_g1_3772_TPlot.pdf
TRINITY_DN2378_c0_g1:6071	si_a549	TRINITY_DN2378_c0_g1	6060	6080	6071	-29.50	-19.80	0.671186440677966	10	4-7,6077-6074;9-21,6072-6060	1-3,6080-6078[UP5];8-8,6073-6073[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GGGGGUGGAGAAGGAGAUAAA&UCAAUCUAUUUCUUUAUCUCC	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN2378_c0_g1_6071_TPlot.pdf
TRINITY_DN2378_c0_g1:7972	si_a271	TRINITY_DN2378_c0_g1	7958	7981	7972	-34.60	-22.50	0.65028901734104	6	1-10,7981-7972;11-19,7970-7962;20-21,7959-7958	x-x,7971-7971[BULt];x-x,7961-7960[BULt]	((..(((((((((.((((((((((&))))))))))-)))))))))--))	CGCUGUUUUUUUGAUAGGCGUUUG&CAAACGCCUA-CGAAAAGAU--CG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a271_TRINITY_DN2378_c0_g1_7972_TPlot.pdf
TRINITY_DN237_c0_g1:1217	si_a118	TRINITY_DN237_c0_g1	1206	1226	1217	-30.70	-20.40	0.664495114006515	8	2-2,1225-1225;4-13,1223-1214;15-21,1212-1206	1-1,1226-1226[UP5];3-3,1224-1224[SIL];14-14,1213-1213[SIL]	(((((((.((((((((((.(.&.).)))))))))).)))))))	GUUGUUGGGAAACGGGCUGGG&ACGAGCUUGUUUUAUAGCAAU	4	0.999631482924068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN237_c0_g1_1217_TPlot.pdf
TRINITY_DN237_c0_g1:1736	si_a324	TRINITY_DN237_c0_g1	1720	1745	1736	-27.50	-19.00	0.690909090909091	10	1-13,1745-1733;16-21,1725-1720	14-15,1732-1726[AILt]	((((((.......(((((((((((((&)))))))))))))-----..))))))	CAGGGGUUUGAGGAAAAAGGUCAUGG&CCAUGAUUUUUUU-----AUUCCUUG	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN237_c0_g1_1736_TPlot.pdf
TRINITY_DN237_c0_g1:1737	si_a323	TRINITY_DN237_c0_g1	1729	1746	1737	-26.80	-17.70	0.66044776119403	6.5	2-13,1745-1734;17-21,1733-1729	1-1,1746-1746[UP5];14-16,x-x[BULq]	(((((---((((((((((((.&.))))))))))))...)))))	GAGGA---AAAAGGUCAUGGU&UCCAUGAUUUUUUUAUUCCUU	4	0.999999983461381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN237_c0_g1_1737_TPlot.pdf
TRINITY_DN2381_c0_g1:2149	si_s252	TRINITY_DN2381_c0_g1	2138	2157	2149	-31.10	-21.70	0.697749196141479	7.5	1-8,2157-2150;12-21,2147-2138	9-11,2149-2148[AILq]	((((((((((..-((((((((&))))))))...))))))))))	UGGGUGGUAUCG-GGGAAAUG&CAUUUCCCGAUAUAUUACUCA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN2381_c0_g1_2149_TPlot.pdf
TRINITY_DN2381_c0_g1:2462	si_a628	TRINITY_DN2381_c0_g1	2451	2474	2462	-27.10	-18.30	0.675276752767528	11.5	3-8,2472-2467;9-21,2463-2451	1-2,2474-2473[UP5];x-x,2466-2464[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	GGAAAGAUCGACAACAUGAUACAA&GCGUAUUA---UGUCGAUUUUUUU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN2381_c0_g1_2462_TPlot.pdf
TRINITY_DN2381_c0_g1:2645	si_a692	TRINITY_DN2381_c0_g1	2634	2654	2645	-34.50	-22.50	0.652173913043478	8	1-4,2654-2651;7-18,2648-2637	5-6,2650-2649[SIL];19-21,2636-2634[UP3]	...((((((((((((..((((&))))..))))))))))))...	UACACCAGUUGUGUUAAGAAC&GUUUCGAACACAACUGGUACA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a692_TRINITY_DN2381_c0_g1_2645_TPlot.pdf
TRINITY_DN2381_c0_g1:3430	si_s76	TRINITY_DN2381_c0_g1	3419	3439	3430	-23.60	-19.60	0.830508474576271	6	1-18,3439-3422	19-21,3421-3419[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAUGGAGGAAAGAAGAAAAGU&AUUUUUUUUCUUUCCUUUCUU	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2381_c0_g1_3430_TPlot.pdf
TRINITY_DN2381_c0_g1:5150	si_a326	TRINITY_DN2381_c0_g1	5139	5160	5150	-26.20	-17.10	0.652671755725191	13	5-8,5156-5153;9-21,5151-5139	1-4,5160-5157[UP5];x-x,5152-5152[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	GACGAGGAGUAGGCAGAAAGCA&AUGAUUUU-UUUAUUCCUUGUC	2	0.999999958142429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2381_c0_g1_5150_TPlot.pdf
TRINITY_DN2381_c0_g1:5230	si_a154	TRINITY_DN2381_c0_g1	5219	5238	5230	-27.00	-17.80	0.659259259259259	10	2-7,5237-5232;10-18,5230-5222	1-1,5238-5238[UP5];8-9,5231-5231[AILq];19-21,5221-5219[UP3]	...(((((((((.-((((((.&.))))))..)))))))))...	UUCAGAUUGGCCG-AAGACAG&UUGUUUUAAGGUCAAUCUAUU	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN2381_c0_g1_5230_TPlot.pdf
TRINITY_DN23821_c0_g1:117	si_a596	TRINITY_DN23821_c0_g1	106	133	117	-32.30	-22.30	0.690402476780186	17	1-8,133-126;9-18,118-109	x-x,125-119[BULt];19-21,108-106[UP3]	...((((((((((.......((((((((&))))))))-------))))))))))...	UUCUUGCGAAAAUAAAAACUUCUGUCCU&AGGACAGA-------AUUUUCGCAAUUC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN23821_c0_g1_117_TPlot.pdf
TRINITY_DN2382_c0_g1:812	si_s549	TRINITY_DN2382_c0_g1	801	821	812	-20.50	-16.50	0.804878048780488	6	1-16,821-806	17-21,805-801[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAUUUUUAAUUCUGUUUUGAU&AUCAAAAUAGAAUUAAUAUUU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN2382_c0_g1_812_TPlot.pdf
TRINITY_DN2382_c0_g1:814	si_s547	TRINITY_DN2382_c0_g1	803	823	814	-24.00	-17.90	0.745833333333333	6	2-18,822-806	1-1,823-823[UP5];19-21,805-803[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUUUUAAUUCUGUUUUGAUUU&CGAUCAAAAUAGAAUUAAUAU	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN2382_c0_g1_814_TPlot.pdf
TRINITY_DN2382_c0_g1:817	si_s544	TRINITY_DN2382_c0_g1	806	826	817	-26.90	-19.70	0.732342007434944	4.5	1-3,826-824;5-21,822-806	4-4,823-823[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	UUAAUUCUGUUUUGAUUUGGU&AUCCGAUCAAAAUAGAAUUAA	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN2382_c0_g1_817_TPlot.pdf
TRINITY_DN2382_c0_g1:818	si_s543	TRINITY_DN2382_c0_g1	807	827	818	-28.80	-19.10	0.663194444444445	5.5	2-4,826-824;6-21,822-807	1-1,827-827[UP5];5-5,823-823[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	UAAUUCUGUUUUGAUUUGGUA&GAUCCGAUCAAAAUAGAAUUA	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN2382_c0_g1_818_TPlot.pdf
TRINITY_DN2383_c0_g1:1510	si_s78	TRINITY_DN2383_c0_g1	1499	1520	1510	-26.20	-17.42	0.664885496183206	12.5	3-8,1518-1513;12-21,1508-1499	1-2,1520-1519[UP5];9-11,1512-1509[AILt]	((((((((((....((((((..&..))))))-...))))))))))	AGAAGGAAGGUGUUGAAGAAUU&UUUUUUUC-UUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2383_c0_g1_1510_TPlot.pdf
TRINITY_DN2383_c0_g1:2982	si_s813	TRINITY_DN2383_c0_g1	2971	2991	2982	-27.10	-18.20	0.671586715867159	10	1-14,2991-2978	15-21,2977-2971[UP3]	.......((((((((((((((&)))))))))))))).......	GAUCAAAGGGAAAAGGUGAUG&CGUUACCUUUUCUUAAUAAUG	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN2383_c0_g1_2982_TPlot.pdf
TRINITY_DN2383_c0_g1:2987	si_s808	TRINITY_DN2383_c0_g1	2976	2995	2987	-28.60	-20.10	0.702797202797203	8	1-4,2995-2992;6-19,2991-2978	5-5,x-x[BULq];20-21,2977-2976[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	AAGGGAAAAGGUGAUG-GGAU&AUCUUCGUUACCUUUUCUUAA	2	0.996067721423274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2383_c0_g1_2987_TPlot.pdf
TRINITY_DN2383_c0_g1:2988	si_s807	TRINITY_DN2383_c0_g1	2977	2996	2988	-28.90	-20.10	0.695501730103806	8	2-5,2995-2992;7-20,2991-2978	1-1,2996-2996[UP5];6-6,x-x[BULq];21-21,2977-2977[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	AGGGAAAAGGUGAUG-GGAUU&UAUCUUCGUUACCUUUUCUUA	4	0.999988269255955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2383_c0_g1_2988_TPlot.pdf
TRINITY_DN2384_c0_g1:1235	si_s79	TRINITY_DN2384_c0_g1	1222	1244	1235	-26.20	-17.10	0.652671755725191	10.5	4-14,1241-1231;15-19,1228-1224	1-3,1244-1242[UP5];x-x,1230-1229[BULt];20-21,1223-1222[UP3]	..(((((..(((((((((((...&...)))))))))))--)))))..	UUGGAGAUCAAGGGAAGAAACUU&UUUUUUCUUUCCUU--UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2384_c0_g1_1235_TPlot.pdf
TRINITY_DN2384_c0_g1:1237	si_s77	TRINITY_DN2384_c0_g1	1224	1246	1237	-25.50	-16.70	0.654901960784314	12.5	6-16,1241-1231;17-21,1228-1224	1-5,1246-1242[UP5];x-x,1230-1229[BULt]	(((((..(((((((((((.....&.....)))))))))))--)))))	GGAGAUCAAGGGAAGAAACUUUA&UUUUUUUUCUUUCCUU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2384_c0_g1_1237_TPlot.pdf
TRINITY_DN23851_c1_g1:21	si_a400	TRINITY_DN23851_c1_g1	10	30	21	-22.80	-15.10	0.662280701754386	9	2-7,29-24;10-18,21-13	1-1,30-30[UP5];8-9,23-22[SIL];19-21,12-10[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	AAAAAACAAAACUUUUCUGUC&UAUAGAAUUGUUUUGUUUAUA	4	0.999999999636922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN23851_c1_g1_21_TPlot.pdf
TRINITY_DN23851_c1_g1:22	si_a399	TRINITY_DN23851_c1_g1	11	31	22	-22.60	-15.10	0.668141592920354	10	3-8,29-24;11-19,21-13	1-2,31-30[UP5];9-10,23-22[SIL];20-21,12-11[UP3]	..(((((((((..((((((..&..))))))..)))))))))..	AAAAACAAAACUUUUCUGUCU&AUAUAGAAUUGUUUUGUUUAU	1	0.204397321620989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN23851_c1_g1_22_TPlot.pdf
TRINITY_DN23851_c1_g1:23	si_a398	TRINITY_DN23851_c1_g1	12	32	23	-22.40	-15.10	0.674107142857143	11	4-9,29-24;12-20,21-13	1-3,32-30[UP5];10-11,23-22[SIL];21-21,12-12[UP3]	.(((((((((..((((((...&...))))))..))))))))).	AAAACAAAACUUUUCUGUCUG&AAUAUAGAAUUGUUUUGUUUA	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN23851_c1_g1_23_TPlot.pdf
TRINITY_DN2385_c0_g1:483	si_s803	TRINITY_DN2385_c0_g1	472	492	483	-26.00	-17.10	0.657692307692308	17.5	8-18,485-475	1-7,492-486[UP5];19-21,474-472[UP3]	...(((((((((((.......&.......)))))))))))...	AUCAGGUGACGAGGGAGGUAG&AUUUUAUCUUCGUUACCUUUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2385_c0_g1_483_TPlot.pdf
TRINITY_DN2385_c0_g1:632	si_s81	TRINITY_DN2385_c0_g1	621	641	632	-28.90	-21.60	0.747404844290658	3.5	1-13,641-629;15-20,627-622	14-14,628-628[SIL];21-21,621-621[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UGGAGAAAAAAGGGAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	0.999999996956449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2385_c0_g1_632_TPlot.pdf
TRINITY_DN2385_c0_g1:634	si_s79	TRINITY_DN2385_c0_g1	623	643	634	-26.20	-19.20	0.732824427480916	5.5	3-15,641-629;17-21,627-623	1-2,643-642[UP5];16-16,628-628[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GAGAAAAAAGGGAAGAAAACU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2385_c0_g1_634_TPlot.pdf
TRINITY_DN2385_c0_g1:636	si_s77	TRINITY_DN2385_c0_g1	622	645	636	-25.50	-17.20	0.674509803921569	11.5	5-16,641-630;17-21,626-622	1-4,645-642[UP5];x-x,629-627[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	GGAGAAAAAAGGGAAGAAAACUUC&UUUUUUUUCUUUCCUU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2385_c0_g1_636_TPlot.pdf
TRINITY_DN2385_c0_g1:820	si_s76	TRINITY_DN2385_c0_g1	808	829	820	-23.60	-16.20	0.686440677966102	12	5-18,825-812;19-20,810-809	1-4,829-826[UP5];x-x,811-811[BULt];21-21,808-808[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	UAGUAAAGGAGAGAAGAGCGGA&AUUUUUUUUCUUUCCUUU-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2385_c0_g1_820_TPlot.pdf
TRINITY_DN2385_c0_g1:821	si_s75	TRINITY_DN2385_c0_g1	809	830	821	-24.00	-16.20	0.675	12.5	6-19,825-812;20-21,810-809	1-5,830-826[UP5];x-x,811-811[BULt]	((.((((((((((((((.....&.....))))))))))))))-))	AGUAAAGGAGAGAAGAGCGGAC&UAUUUUUUUUCUUUCCUUU-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2385_c0_g1_821_TPlot.pdf
TRINITY_DN23860_c0_g1:110	si_s68	TRINITY_DN23860_c0_g1	99	121	110	-23.10	-16.00	0.692640692640693	11.5	1-8,121-114;10-19,110-101	9-9,113-111[AILt];20-21,100-99[UP3]	..((((((((((...((((((((&))))))))--.))))))))))..	CCAGAAAGAAGAAACGGGAGUUG&CAACUUCU--AUUUUUUUUCUUU	3	0.999999999999691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN23860_c0_g1_110_TPlot.pdf
TRINITY_DN23860_c0_g1:113	si_s69	TRINITY_DN23860_c0_g1	102	120	113	-23.40	-16.00	0.683760683760684	8.5	1-7,120-114;11-21,112-102	8-10,113-113[AILq]	(((((((((((.--(((((((&)))))))...)))))))))))	GAAAGAAGAAAC--GGGAGUU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN23860_c0_g1_113_TPlot.pdf
TRINITY_DN23860_c0_g1:116	si_a778	TRINITY_DN23860_c0_g1	102	125	116	-28.30	-19.50	0.68904593639576	11.5	1-11,125-115;12-14,110-108;16-21,107-102	x-x,114-111[BULt];15-15,x-x[BULq]	((((((-(((....(((((((((((&)))))))))))----))).))))))	GAAAGA-AGAAACGGGAGUUGGAUC&GAUUCAACUCU----UCUAUUUUUC	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN23860_c0_g1_116_TPlot.pdf
TRINITY_DN23860_c0_g1:125	si_a769	TRINITY_DN23860_c0_g1	114	134	125	-26.70	-18.40	0.689138576779026	13.5	6-7,129-128;9-21,126-114	1-5,134-130[UP5];8-8,127-127[SIL]	(((((((((((((.((.....&.....)).)))))))))))))	GGGAGUUGGAUCGUUCUUGUG&UUUUUGAUUGAUUCAACUCUU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN23860_c0_g1_125_TPlot.pdf
TRINITY_DN2386_c0_g1:1424	si_a99	TRINITY_DN2386_c0_g1	1413	1433	1424	-28.20	-18.90	0.670212765957447	10	3-16,1431-1418	1-2,1433-1432[UP5];17-21,1417-1413[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGAGAUUAUCUUUGUUGCCGA&AAGGUAACGAAGAUAAAAUAC	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a99_TRINITY_DN2386_c0_g1_1424_TPlot.pdf
TRINITY_DN2386_c0_g1:1425	si_a98	TRINITY_DN2386_c0_g1	1414	1434	1425	-26.40	-18.90	0.715909090909091	11	4-17,1431-1418	1-3,1434-1432[UP5];18-21,1417-1414[UP3]	....((((((((((((((...&...))))))))))))))....	GAGAUUAUCUUUGUUGCCGAA&AAAGGUAACGAAGAUAAAAUA	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN2386_c0_g1_1425_TPlot.pdf
TRINITY_DN2386_c0_g1:1426	si_a97	TRINITY_DN2386_c0_g1	1415	1435	1426	-26.00	-18.90	0.726923076923077	12	5-18,1431-1418	1-4,1435-1432[UP5];19-21,1417-1415[UP3]	...((((((((((((((....&....))))))))))))))...	AGAUUAUCUUUGUUGCCGAAC&AAAAGGUAACGAAGAUAAAAU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN2386_c0_g1_1426_TPlot.pdf
TRINITY_DN2386_c0_g1:1427	si_a96	TRINITY_DN2386_c0_g1	1416	1436	1427	-27.90	-18.90	0.67741935483871	13	6-19,1431-1418	1-5,1436-1432[UP5];20-21,1417-1416[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAUUAUCUUUGUUGCCGAACA&GAAAAGGUAACGAAGAUAAAA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a96_TRINITY_DN2386_c0_g1_1427_TPlot.pdf
TRINITY_DN2386_c0_g1:1428	si_a95	TRINITY_DN2386_c0_g1	1417	1437	1428	-28.60	-18.90	0.660839160839161	13.5	7-20,1431-1418	1-6,1437-1432[UP5];21-21,1417-1417[UP3]	.((((((((((((((......&......)))))))))))))).	AUUAUCUUUGUUGCCGAACAG&AGAAAAGGUAACGAAGAUAAA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a95_TRINITY_DN2386_c0_g1_1428_TPlot.pdf
TRINITY_DN2386_c0_g1:1429	si_a94	TRINITY_DN2386_c0_g1	1418	1438	1429	-28.60	-18.70	0.653846153846154	14.5	8-21,1431-1418	1-7,1438-1432[UP5]	((((((((((((((.......&.......))))))))))))))	UUAUCUUUGUUGCCGAACAGG&AAGAAAAGGUAACGAAGAUAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN2386_c0_g1_1429_TPlot.pdf
TRINITY_DN2386_c0_g1:1437	si_a403	TRINITY_DN2386_c0_g1	1426	1446	1437	-22.00	-15.20	0.690909090909091	10.5	1-15,1446-1432	16-21,1431-1426[UP3]	......(((((((((((((((&)))))))))))))))......	GUUGCCGAACAGGAUAGUUCU&AGAAUUGUUUUGUUUAUAUUU	3	0.999999970199631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN2386_c0_g1_1437_TPlot.pdf
TRINITY_DN2386_c0_g1:1438	si_a402	TRINITY_DN2386_c0_g1	1427	1447	1438	-22.40	-16.50	0.736607142857143	9.5	1-16,1447-1432	17-21,1431-1427[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUGCCGAACAGGAUAGUUCUA&UAGAAUUGUUUUGUUUAUAUU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN2386_c0_g1_1438_TPlot.pdf
TRINITY_DN2386_c0_g1:1439	si_a401	TRINITY_DN2386_c0_g1	1428	1448	1439	-22.60	-16.50	0.730088495575221	9.5	2-17,1447-1432	1-1,1448-1448[UP5];18-21,1431-1428[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGCCGAACAGGAUAGUUCUAA&AUAGAAUUGUUUUGUUUAUAU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2386_c0_g1_1439_TPlot.pdf
TRINITY_DN2386_c0_g1:1440	si_a400	TRINITY_DN2386_c0_g1	1429	1449	1440	-22.80	-16.50	0.723684210526316	10	3-18,1447-1432	1-2,1449-1448[UP5];19-21,1431-1429[UP3]	...((((((((((((((((..&..))))))))))))))))...	GCCGAACAGGAUAGUUCUAAG&UAUAGAAUUGUUUUGUUUAUA	2	0.962120194413448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2386_c0_g1_1440_TPlot.pdf
TRINITY_DN2386_c0_g1:1441	si_a399	TRINITY_DN2386_c0_g1	1430	1450	1441	-22.60	-16.50	0.730088495575221	10.5	4-19,1447-1432	1-3,1450-1448[UP5];20-21,1431-1430[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCGAACAGGAUAGUUCUAAGC&AUAUAGAAUUGUUUUGUUUAU	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2386_c0_g1_1441_TPlot.pdf
TRINITY_DN2386_c0_g1:1442	si_a398	TRINITY_DN2386_c0_g1	1431	1451	1442	-22.40	-16.50	0.736607142857143	11.5	5-20,1447-1432	1-4,1451-1448[UP5];21-21,1431-1431[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAACAGGAUAGUUCUAAGCU&AAUAUAGAAUUGUUUUGUUUA	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2386_c0_g1_1442_TPlot.pdf
TRINITY_DN2386_c0_g1:1510	si_a353	TRINITY_DN2386_c0_g1	1499	1519	1510	-24.00	-15.60	0.65	7	1-18,1519-1502	19-21,1501-1499[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACUUUGAAAUGGAGUUGAUAU&AUAUUAAUUCUAUUUUGAUCG	2	0.997259115352802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN2386_c0_g1_1510_TPlot.pdf
TRINITY_DN2386_c0_g1:1511	si_a352	TRINITY_DN2386_c0_g1	1500	1520	1511	-22.50	-16.80	0.746666666666667	6	1-19,1520-1502	20-21,1501-1500[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CUUUGAAAUGGAGUUGAUAUU&AAUAUUAAUUCUAUUUUGAUC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN2386_c0_g1_1511_TPlot.pdf
TRINITY_DN2386_c0_g1:1512	si_a351	TRINITY_DN2386_c0_g1	1501	1521	1512	-20.50	-17.10	0.834146341463415	5.5	2-20,1520-1502	1-1,1521-1521[UP5];21-21,1501-1501[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UUUGAAAUGGAGUUGAUAUUG&AAAUAUUAAUUCUAUUUUGAU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2386_c0_g1_1512_TPlot.pdf
TRINITY_DN2386_c0_g1:1513	si_a350	TRINITY_DN2386_c0_g1	1502	1522	1513	-20.30	-17.00	0.83743842364532	6.5	3-21,1520-1502	1-2,1522-1521[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUGAAAUGGAGUUGAUAUUGG&AAAAUAUUAAUUCUAUUUUGA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN2386_c0_g1_1513_TPlot.pdf
TRINITY_DN2386_c0_g1:1514	si_a349	TRINITY_DN2386_c0_g1	1503	1523	1514	-21.30	-16.10	0.755868544600939	9	4-20,1520-1504	1-3,1523-1521[UP5];21-21,1503-1503[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGAAAUGGAGUUGAUAUUGGG&GAAAAUAUUAAUUCUAUUUUG	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN2386_c0_g1_1514_TPlot.pdf
TRINITY_DN2386_c0_g1:1515	si_a348	TRINITY_DN2386_c0_g1	1504	1524	1515	-21.10	-15.80	0.748815165876777	9.5	5-21,1520-1504	1-4,1524-1521[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAAUGGAGUUGAUAUUGGGA&CGAAAAUAUUAAUUCUAUUUU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN2386_c0_g1_1515_TPlot.pdf
TRINITY_DN2386_c0_g1:1516	si_a347	TRINITY_DN2386_c0_g1	1505	1522	1516	-23.50	-15.30	0.651063829787234	9	1-4,1522-1519;8-21,1518-1505	5-7,x-x[BULq]	((((((((((((((---((((&))))...))))))))))))))	AAAUGGAGUUGAUA---UUGG&CCGAAAAUAUUAAUUCUAUUU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN2386_c0_g1_1516_TPlot.pdf
TRINITY_DN2386_c0_g1:1517	si_a346	TRINITY_DN2386_c0_g1	1506	1523	1517	-25.90	-17.40	0.671814671814672	9	1-5,1523-1519;9-21,1518-1506	6-8,x-x[BULq]	(((((((((((((---(((((&)))))...)))))))))))))	AAUGGAGUUGAUA---UUGGG&CCCGAAAAUAUUAAUUCUAUU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN2386_c0_g1_1517_TPlot.pdf
TRINITY_DN2386_c0_g1:1518	si_a345	TRINITY_DN2386_c0_g1	1507	1524	1518	-26.90	-18.10	0.672862453531599	8.5	1-6,1524-1519;10-21,1518-1507	7-9,x-x[BULq]	((((((((((((---((((((&))))))...))))))))))))	AUGGAGUUGAUA---UUGGGA&UCCCGAAAAUAUUAAUUCUAU	0	0.0344146606019428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN2386_c0_g1_1518_TPlot.pdf
TRINITY_DN2386_c0_g1:1519	si_s252	TRINITY_DN2386_c0_g1	1509	1528	1519	-31.10	-21.60	0.694533762057878	6	1-13,1528-1516;17-20,1513-1510	14-16,1515-1514[AILq];21-21,1509-1509[UP3]	.((((..-(((((((((((((&)))))))))))))...)))).	GGAGUUG-AUAUUGGGAGAUG&CAUUUCCCGAUAUAUUACUCA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN2386_c0_g1_1519_TPlot.pdf
TRINITY_DN2386_c0_g1:1520	si_s251	TRINITY_DN2386_c0_g1	1510	1529	1520	-32.90	-25.10	0.762917933130699	5	1-14,1529-1516;18-21,1513-1510	15-17,1515-1514[AILq]	((((..-((((((((((((((&))))))))))))))...))))	GAGUUG-AUAUUGGGAGAUGC&GCAUUUCCCGAUAUAUUACUC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s251_TRINITY_DN2386_c0_g1_1520_TPlot.pdf
TRINITY_DN2386_c0_g1:1521	si_s250	TRINITY_DN2386_c0_g1	1511	1530	1521	-33.30	-23.00	0.690690690690691	5.5	1-15,1530-1516;19-21,1513-1511	16-18,1515-1514[AILq]	(((..-(((((((((((((((&)))))))))))))))...)))	AGUUG-AUAUUGGGAGAUGCU&GGCAUUUCCCGAUAUAUUACU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN2386_c0_g1_1521_TPlot.pdf
TRINITY_DN2386_c0_g1:1522	si_s249	TRINITY_DN2386_c0_g1	1511	1531	1522	-33.30	-22.90	0.687687687687688	8	1-16,1531-1516	17-21,1515-1511[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGUUGAUAUUGGGAGAUGCUU&AGGCAUUUCCCGAUAUAUUAC	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN2386_c0_g1_1522_TPlot.pdf
TRINITY_DN2386_c0_g1:1523	si_s248	TRINITY_DN2386_c0_g1	1512	1532	1523	-31.90	-22.90	0.717868338557994	7.5	2-17,1531-1516	1-1,1532-1532[UP5];18-21,1515-1512[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUUGAUAUUGGGAGAUGCUUU&UAGGCAUUUCCCGAUAUAUUA	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN2386_c0_g1_1523_TPlot.pdf
TRINITY_DN2386_c0_g1:1524	si_s247	TRINITY_DN2386_c0_g1	1513	1533	1524	-31.70	-22.90	0.722397476340694	8.5	3-18,1531-1516	1-2,1533-1532[UP5];19-21,1515-1513[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUGAUAUUGGGAGAUGCUUUG&AUAGGCAUUUCCCGAUAUAUU	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN2386_c0_g1_1524_TPlot.pdf
TRINITY_DN2386_c0_g1:1525	si_s246	TRINITY_DN2386_c0_g1	1514	1534	1525	-31.70	-22.90	0.722397476340694	9.5	4-19,1531-1516	1-3,1534-1532[UP5];20-21,1515-1514[UP3]	..((((((((((((((((...&...))))))))))))))))..	UGAUAUUGGGAGAUGCUUUGA&AAUAGGCAUUUCCCGAUAUAU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN2386_c0_g1_1525_TPlot.pdf
TRINITY_DN2386_c0_g1:1526	si_s245	TRINITY_DN2386_c0_g1	1515	1535	1526	-33.20	-22.90	0.689759036144578	10.5	5-20,1531-1516	1-4,1535-1532[UP5];21-21,1515-1515[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAUAUUGGGAGAUGCUUUGAU&CAAUAGGCAUUUCCCGAUAUA	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN2386_c0_g1_1526_TPlot.pdf
TRINITY_DN2386_c0_g1:1527	si_s244	TRINITY_DN2386_c0_g1	1516	1534	1527	-33.80	-23.60	0.698224852071006	6.5	1-4,1534-1531;7-21,1530-1516	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	AUAUUGGGAGAUGCU--UUGA&UCAAUAGGCAUUUCCCGAUAU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN2386_c0_g1_1527_TPlot.pdf
TRINITY_DN2386_c0_g1:1528	si_s243	TRINITY_DN2386_c0_g1	1517	1535	1528	-33.80	-23.40	0.692307692307692	6	1-5,1535-1531;8-21,1530-1517	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	UAUUGGGAGAUGCU--UUGAU&AUCAAUAGGCAUUUCCCGAUA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s243_TRINITY_DN2386_c0_g1_1528_TPlot.pdf
TRINITY_DN2386_c0_g1:1529	si_s242	TRINITY_DN2386_c0_g1	1518	1536	1529	-33.40	-22.20	0.664670658682635	7	2-6,1535-1531;9-21,1530-1518	1-1,1536-1536[UP5];7-8,x-x[BULq]	(((((((((((((--(((((.&.)))))..)))))))))))))	AUUGGGAGAUGCU--UUGAUC&AAUCAAUAGGCAUUUCCCGAU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s242_TRINITY_DN2386_c0_g1_1529_TPlot.pdf
TRINITY_DN2386_c0_g1:831	si_s695	TRINITY_DN2386_c0_g1	820	840	831	-24.70	-17.80	0.720647773279352	6	2-9,839-832;11-21,830-820	1-1,840-840[UP5];10-10,831-831[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	GCUGAUAAAUUCGCUAAUUAC&UUAAUUAGUCGAUUUAUUAGU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN2386_c0_g1_831_TPlot.pdf
TRINITY_DN2387_c0_g1:1265	si_a314	TRINITY_DN2387_c0_g1	1248	1274	1265	-27.10	-17.90	0.660516605166052	9	1-8,1274-1267;10-13,1265-1262;14-21,1255-1248	9-9,1266-1266[SIL];x-x,1261-1256[BULt]	((((((((......((((.((((((((&)))))))).))))------))))))))	GAAAGUCAACAUAAUGGAAAAAUCCAA&UUGGAUUUAUCCA------UGAUUUUU	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN2387_c0_g1_1265_TPlot.pdf
TRINITY_DN2387_c0_g1:1266	si_a313	TRINITY_DN2387_c0_g1	1249	1275	1266	-28.70	-20.00	0.696864111498258	8.5	1-9,1275-1267;11-14,1265-1262;15-21,1255-1249	10-10,1266-1266[SIL];x-x,1261-1256[BULt]	(((((((......((((.(((((((((&))))))))).))))------)))))))	AAAGUCAACAUAAUGGAAAAAUCCAAG&CUUGGAUUUAUCCA------UGAUUUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN2387_c0_g1_1266_TPlot.pdf
TRINITY_DN2387_c0_g1:1522	si_a125	TRINITY_DN2387_c0_g1	1511	1532	1522	-25.00	-17.20	0.688	5.5	2-7,1531-1526;8-12,1524-1520;14-21,1518-1511	1-1,1532-1532[UP5];x-x,1525-1525[BULt];13-13,1519-1519[SIL]	((((((((.(((((.((((((.&.))))))-))))).))))))))	AGUUGCUGGUGCUAUUAAAACU&UGUUUUA-UAGCAAUAGUAAUU	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN2387_c0_g1_1522_TPlot.pdf
TRINITY_DN2387_c0_g1:2077	si_a484	TRINITY_DN2387_c0_g1	2065	2086	2077	-27.30	-18.40	0.673992673992674	9	2-4,2085-2083;7-15,2080-2072;16-21,2070-2065	1-1,2086-2086[UP5];5-6,2082-2081[SIL];x-x,2071-2071[BULt]	((((((.(((((((((..(((.&.)))..)))))))))-))))))	AGCGACAAUGUUCUAUUCGGCG&UGUUAUAUAGAAUAU-GUCGUU	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN2387_c0_g1_2077_TPlot.pdf
TRINITY_DN23890_c0_g1:75	si_a488	TRINITY_DN23890_c0_g1	64	89	75	-26.40	-17.20	0.651515151515151	16	1-7,89-83;8-19,77-66	x-x,82-78[BULt];20-21,65-64[UP3]	..((((((((((((.....(((((((&)))))))-----))))))))))))..	CCAAAGCGGCAUGUAUUGUUCUGUGU&AUAUAGA-----AUAUGUCGUUUUUC	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN23890_c0_g1_75_TPlot.pdf
TRINITY_DN23891_c0_g1:820	si_a611	TRINITY_DN23891_c0_g1	808	831	820	-36.40	-24.10	0.662087912087912	10	1-5,831-827;6-16,824-814;17-21,812-808	x-x,826-825[BULt];x-x,813-813[BULt]	(((((.(((((((((((..(((((&)))))--)))))))))))-)))))	AUGCCUUGGUUGGUUGGUUGGUUG&CAAUU--CCAAUCGACUA-GGCGU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN23891_c0_g1_820_TPlot.pdf
TRINITY_DN238_c0_g1:1054	si_a795	TRINITY_DN238_c0_g1	1034	1063	1054	-30.20	-19.90	0.658940397350993	21.5	3-12,1061-1052;13-21,1042-1034	1-2,1063-1062[UP5];x-x,1051-1043[BULt]	(((((((((.........((((((((((..&..))))))))))---------)))))))))	CUUUGGAUUUCCUCAACAGGAAAAUAGAUG&UUUCUAUUUUCC---------AAUCCGAAG	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN238_c0_g1_1054_TPlot.pdf
TRINITY_DN238_c0_g1:326	si_a318	TRINITY_DN238_c0_g1	315	335	326	-22.50	-15.40	0.684444444444444	12.5	6-18,330-318	1-5,335-331[UP5];19-21,317-315[UP3]	...(((((((((((((.....&.....)))))))))))))...	UGCAAGAAAUCAUGGAGAAAG&AUUUAUCCAUGAUUUUUUUAU	3	0.999999998569618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN238_c0_g1_326_TPlot.pdf
TRINITY_DN238_c0_g1:327	si_a317	TRINITY_DN238_c0_g1	316	337	327	-24.30	-18.60	0.765432098765432	7.5	1-5,337-333;7-19,330-318	6-6,332-331[AILt];20-21,317-316[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	GCAAGAAAUCAUGGAGAAAGUC&GAUUU-AUCCAUGAUUUUUUUA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN238_c0_g1_327_TPlot.pdf
TRINITY_DN238_c0_g1:331	si_a313	TRINITY_DN238_c0_g1	320	341	331	-28.70	-21.80	0.759581881533101	8.5	3-9,339-333;11-21,330-320	1-2,341-340[UP5];10-10,332-331[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GAAAUCAUGGAGAAAGUCCACA&CUUGGAUUU-AUCCAUGAUUUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN238_c0_g1_331_TPlot.pdf
TRINITY_DN238_c0_g1:619	si_a318	TRINITY_DN238_c0_g1	608	628	619	-22.50	-15.80	0.702222222222222	7	2-10,627-619;12-14,617-615;16-21,613-608	1-1,628-628[UP5];11-11,618-618[SIL];15-15,614-614[SIL]	((((((.(((.(((((((((.&.))))))))).))).))))))	GUAGAACAAUGGUGGAUGAAC&AUUUAUCCAUGAUUUUUUUAU	4	0.999999626583502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN238_c0_g1_619_TPlot.pdf
TRINITY_DN238_c1_g1:1437	si_a408	TRINITY_DN238_c1_g1	1426	1446	1437	-20.10	-13.50	0.671641791044776	8.5	1-12,1446-1435;14-18,1433-1429	13-13,1434-1434[SIL];19-21,1428-1426[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AUAUUAAGGAUAGGCAGAGCA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999934068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN238_c1_g1_1437_TPlot.pdf
TRINITY_DN238_c1_g1:1438	si_a407	TRINITY_DN238_c1_g1	1427	1447	1438	-19.80	-14.40	0.727272727272727	7.5	1-13,1447-1435;15-19,1433-1429	14-14,1434-1434[SIL];20-21,1428-1427[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UAUUAAGGAUAGGCAGAGCAA&UUGUUUUGUUUAUAUUUAAAU	4	0.99999174108694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN238_c1_g1_1438_TPlot.pdf
TRINITY_DN238_c1_g1:1440	si_a405	TRINITY_DN238_c1_g1	1429	1449	1440	-19.80	-14.20	0.717171717171717	8.5	3-15,1447-1435;17-21,1433-1429	1-2,1449-1448[UP5];16-16,1434-1434[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UUAAGGAUAGGCAGAGCAAAG&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999252227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN238_c1_g1_1440_TPlot.pdf
TRINITY_DN238_c1_g1:1478	si_s76	TRINITY_DN238_c1_g1	1468	1487	1478	-23.60	-17.00	0.720338983050847	7	1-15,1487-1473;18-19,1471-1470	16-17,1472-1472[AILq];20-21,1469-1468[UP3]	..((.-(((((((((((((((&)))))))))))))))..))..	CUGAU-GGAGAGAGAAAAGAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN238_c1_g1_1478_TPlot.pdf
TRINITY_DN238_c1_g1:1479	si_s75	TRINITY_DN238_c1_g1	1469	1488	1479	-24.00	-17.00	0.708333333333333	6.5	2-16,1487-1473;19-20,1471-1470	1-1,1488-1488[UP5];17-18,1472-1472[AILq];21-21,1469-1469[UP3]	.((.-(((((((((((((((.&.)))))))))))))))..)).	UGAU-GGAGAGAGAAAAGAUU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN238_c1_g1_1479_TPlot.pdf
TRINITY_DN238_c1_g1:1480	si_s609	TRINITY_DN238_c1_g1	1467	1489	1480	-27.70	-18.58	0.670758122743682	7	1-11,1489-1479;15-18,1475-1472;19-21,1469-1467	12-14,1478-1476[SIL];x-x,1471-1470[BULt]	(((..((((...(((((((((((&)))))))))))...))))--)))	GCUGAUGGAGAGAGAAAAGAUUC&GAAUCUUUUUUAAAUCCA--AGC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN238_c1_g1_1480_TPlot.pdf
TRINITY_DN238_c1_g1:3168	si_a56	TRINITY_DN238_c1_g1	3153	3177	3168	-38.90	-25.30	0.650385604113111	10.5	1-5,3177-3173;7-14,3171-3164;15-20,3159-3154	6-6,3172-3172[SIL];x-x,3163-3160[BULt];21-21,3153-3153[UP3]	.((((((....((((((((.(((((&))))).))))))))----)))))).	AGAGGGAACUUGGCGGGUUCACUCC&GGAGUCGACUCGCU----UCUUUCA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN238_c1_g1_3168_TPlot.pdf
TRINITY_DN238_c1_g3:711	si_a766	TRINITY_DN238_c1_g3	697	721	711	-30.50	-20.30	0.665573770491803	8.5	1-9,721-713;10-14,711-707;15-21,703-697	x-x,712-712[BULt];x-x,706-704[BULt]	(((((((...(((((.(((((((((&)))))))))-)))))---)))))))	GGUUGGAGAUUUAAUACAAGAGCCC&GGGUUUUUG-AUUGA---UUCAACU	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN238_c1_g3_711_TPlot.pdf
TRINITY_DN238_c1_g3:798	si_a754	TRINITY_DN238_c1_g3	777	807	798	-34.60	-24.40	0.705202312138728	24	2-10,806-798;11-20,787-778	1-1,807-807[UP5];x-x,797-788[BULt];21-21,777-777[UP3]	.((((((((((..........(((((((((.&.)))))))))----------)))))))))).	UGGAGGCCCAACGCUAUUUUUAGGAGGUUCG&UGAACCUCCU----------UUGGGUUUUUG	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN238_c1_g3_798_TPlot.pdf
TRINITY_DN238_c1_g3:799	si_a753	TRINITY_DN238_c1_g3	778	808	799	-33.10	-24.10	0.72809667673716	25	3-11,806-798;12-21,787-778	1-2,808-807[UP5];x-x,797-788[BULt]	((((((((((..........(((((((((..&..)))))))))----------))))))))))	GGAGGCCCAACGCUAUUUUUAGGAGGUUCGA&AUGAACCUCCU----------UUGGGUUUUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN238_c1_g3_799_TPlot.pdf
TRINITY_DN238_c1_g3:800	si_a752	TRINITY_DN238_c1_g3	779	809	800	-34.80	-23.80	0.683908045977012	26.5	4-12,806-798;13-21,787-779	1-3,809-807[UP5];x-x,797-788[BULt]	(((((((((..........(((((((((...&...)))))))))----------)))))))))	GAGGCCCAACGCUAUUUUUAGGAGGUUCGAA&CAUGAACCUCCU----------UUGGGUUUU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN238_c1_g3_800_TPlot.pdf
TRINITY_DN238_c1_g3:804	si_a383	TRINITY_DN238_c1_g3	789	813	804	-24.80	-16.20	0.653225806451613	12.5	1-11,813-803;12-19,798-791	x-x,802-799[BULt];20-21,790-789[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	GCUAUUUUUAGGAGGUUCGAAGUCA&UGAUUUCGAAU----UAAGAAUAUA	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a383_TRINITY_DN238_c1_g3_804_TPlot.pdf
TRINITY_DN238_c1_g3:805	si_a382	TRINITY_DN238_c1_g3	790	814	805	-24.60	-16.20	0.658536585365854	12.5	2-12,813-803;13-20,798-791	1-1,814-814[UP5];x-x,802-799[BULt];21-21,790-790[UP3]	.((((((((....(((((((((((.&.)))))))))))----)))))))).	CUAUUUUUAGGAGGUUCGAAGUCAG&AUGAUUUCGAAU----UAAGAAUAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN238_c1_g3_805_TPlot.pdf
TRINITY_DN238_c1_g3:806	si_a381	TRINITY_DN238_c1_g3	791	815	806	-24.40	-16.10	0.659836065573771	9	3-13,813-803;14-21,798-791	1-2,815-814[UP5];x-x,802-799[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	UAUUUUUAGGAGGUUCGAAGUCAGA&AAUGAUUUCGAAU----UAAGAAUA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a381_TRINITY_DN238_c1_g3_806_TPlot.pdf
TRINITY_DN23901_c0_g1:1444	si_a792	TRINITY_DN23901_c0_g1	1432	1453	1444	-27.60	-18.70	0.677536231884058	8	1-9,1453-1445;12-16,1442-1438;18-21,1435-1432	10-11,1444-1443[SIL];17-17,1437-1436[AILt]	((((..(((((..(((((((((&)))))))))..)))))-.))))	CGGACAUGGAGUUUAGAGAAAU&AUUUUUCUAUUUUCCA-AUCCG	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN23901_c0_g1_1444_TPlot.pdf
TRINITY_DN2392_c0_g1:2564	si_a899	TRINITY_DN2392_c0_g1	2553	2573	2564	-18.70	-13.30	0.711229946524064	8.5	3-18,2571-2556	1-2,2573-2572[UP5];19-21,2555-2553[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUAUUAUGUUAUUUGUUAUGU&UAAUAAUAAGUAAUAUAAAAA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN2392_c0_g1_2564_TPlot.pdf
TRINITY_DN2392_c0_g1:304	si_a712	TRINITY_DN2392_c0_g1	293	313	304	-28.20	-19.60	0.695035460992908	6	2-13,312-301;15-20,299-294	1-1,313-313[UP5];14-14,300-300[SIL];21-21,293-293[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	AAGUGACUGUUGUUUUGGGAG&AUUCCAAAAUAAUCGUUACUC	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN2392_c0_g1_304_TPlot.pdf
TRINITY_DN2392_c0_g1:305	si_a711	TRINITY_DN2392_c0_g1	294	314	305	-27.90	-19.60	0.702508960573477	7	3-14,312-301;16-21,299-294	1-2,314-313[UP5];15-15,300-300[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGUGACUGUUGUUUUGGGAGC&CAUUCCAAAAUAAUCGUUACU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN2392_c0_g1_305_TPlot.pdf
TRINITY_DN2392_c0_g1:322	si_s810	TRINITY_DN2392_c0_g1	305	331	322	-27.90	-19.80	0.709677419354839	19.5	1-12,331-320;13-19,313-307	x-x,319-314[BULt];20-21,306-305[UP3]	..(((((((......((((((((((((&))))))))))))------)))))))..	UUUUGGGAGCUCAAUGGGGUGACGAGG&CUUCGUUACCUU------UUCUUAAUA	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN2392_c0_g1_322_TPlot.pdf
TRINITY_DN2392_c0_g1:324	si_s808	TRINITY_DN2392_c0_g1	307	333	324	-28.60	-19.90	0.695804195804196	12.5	2-14,332-320;15-21,313-307	1-1,333-333[UP5];x-x,319-314[BULt]	(((((((......(((((((((((((.&.)))))))))))))------)))))))	UUGGGAGCUCAAUGGGGUGACGAGGGC&AUCUUCGUUACCUU------UUCUUAA	4	0.999988508924018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2392_c0_g1_324_TPlot.pdf
TRINITY_DN2392_c0_g1:498	si_s509	TRINITY_DN2392_c0_g1	488	507	498	-22.80	-15.10	0.662280701754386	8	1-11,507-497;13-18,496-491	12-12,x-x[BULq];19-21,490-488[UP3]	...((((((-(((((((((((&))))))))))).))))))...	UUAUAGGGA-AUGGAGUUGUU&AACAAUUCUAUAUUCUUAAUU	4	0.999175696282049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN2392_c0_g1_498_TPlot.pdf
TRINITY_DN2392_c0_g1:499	si_s508	TRINITY_DN2392_c0_g1	489	508	499	-22.80	-15.30	0.671052631578947	7	2-12,507-497;14-19,496-491	1-1,508-508[UP5];13-13,x-x[BULq];20-21,490-489[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UAUAGGGA-AUGGAGUUGUUA&AAACAAUUCUAUAUUCUUAAU	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN2392_c0_g1_499_TPlot.pdf
TRINITY_DN2392_c0_g1:500	si_s507	TRINITY_DN2392_c0_g1	490	509	500	-22.70	-15.30	0.674008810572687	8	3-13,507-497;15-20,496-491	1-2,509-508[UP5];14-14,x-x[BULq];21-21,490-490[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	AUAGGGA-AUGGAGUUGUUAU&AAAACAAUUCUAUAUUCUUAA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN2392_c0_g1_500_TPlot.pdf
TRINITY_DN23940_c0_g1:614	si_a446	TRINITY_DN23940_c0_g1	603	623	614	-25.50	-18.80	0.737254901960784	9	1-4,623-620;6-17,618-607	5-5,619-619[SIL];18-21,606-603[UP3]	....((((((((((((.((((&)))).))))))))))))....	GGCCCAACAGUUGUCUGGUAU&AUAUGAGAUAAUUGUUGUUAU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN23940_c0_g1_614_TPlot.pdf
TRINITY_DN2394_c0_g1:1326	si_a322	TRINITY_DN2394_c0_g1	1315	1335	1326	-27.00	-22.20	0.822222222222222	7	2-6,1334-1330;8-20,1328-1316	1-1,1335-1335[UP5];7-7,1329-1329[SIL];21-21,1315-1315[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UGGGAUGAAGAAGUGAUGGAA&AUCCAUGAUUUUUUUAUUCCU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN2394_c0_g1_1326_TPlot.pdf
TRINITY_DN2394_c0_g1:1469	si_a695	TRINITY_DN2394_c0_g1	1458	1480	1469	-34.90	-22.70	0.650429799426934	10	3-9,1478-1472;10-20,1469-1459	1-2,1480-1479[UP5];x-x,1471-1470[BULt];21-21,1458-1458[UP3]	.(((((((((((..(((((((..&..)))))))--))))))))))).	CGGUGUACCAGUGUUGUGUUUAU&UCGAACACA--ACUGGUACAUUC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a695_TRINITY_DN2394_c0_g1_1469_TPlot.pdf
TRINITY_DN2394_c0_g1:1820	si_s435	TRINITY_DN2394_c0_g1	1809	1829	1820	-20.90	-14.60	0.698564593301435	6.5	1-6,1829-1824;8-17,1822-1813	7-7,1823-1823[SIL];18-21,1812-1809[UP3]	....((((((((((.((((((&)))))).))))))))))....	AGUGAUGAUAUGUAUUUAUUG&CAAUAAUUACAUAUUAUAUAU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN2394_c0_g1_1820_TPlot.pdf
TRINITY_DN2394_c0_g1:1821	si_s434	TRINITY_DN2394_c0_g1	1810	1830	1821	-21.50	-15.20	0.706976744186047	6.5	2-7,1829-1824;9-18,1822-1813	1-1,1830-1830[UP5];8-8,1823-1823[SIL];19-21,1812-1810[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	GUGAUGAUAUGUAUUUAUUGC&ACAAUAAUUACAUAUUAUAUA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN2394_c0_g1_1821_TPlot.pdf
TRINITY_DN2394_c0_g1:1822	si_s433	TRINITY_DN2394_c0_g1	1811	1831	1822	-21.10	-15.20	0.720379146919431	7.5	3-8,1829-1824;10-19,1822-1813	1-2,1831-1830[UP5];9-9,1823-1823[SIL];20-21,1812-1811[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UGAUGAUAUGUAUUUAUUGCU&AACAAUAAUUACAUAUUAUAU	0	0.0554379155539118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN2394_c0_g1_1822_TPlot.pdf
TRINITY_DN2394_c0_g1:1824	si_s431	TRINITY_DN2394_c0_g1	1813	1834	1824	-21.10	-15.40	0.729857819905213	5.5	1-4,1834-1831;5-10,1829-1824;12-21,1822-1813	x-x,1830-1830[BULt];11-11,1823-1823[SIL]	((((((((((.((((((.((((&))))-)))))).))))))))))	AUGAUAUGUAUUUAUUGCUUGU&AUAA-CAAUAAUUACAUAUUAU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN2394_c0_g1_1824_TPlot.pdf
TRINITY_DN2394_c0_g1:1825	si_s430	TRINITY_DN2394_c0_g1	1814	1835	1825	-21.30	-14.20	0.666666666666667	6.5	2-5,1834-1831;6-11,1829-1824;13-21,1822-1814	1-1,1835-1835[UP5];x-x,1830-1830[BULt];12-12,1823-1823[SIL]	(((((((((.((((((.((((.&.))))-)))))).)))))))))	UGAUAUGUAUUUAUUGCUUGUC&UAUAA-CAAUAAUUACAUAUUA	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN2394_c0_g1_1825_TPlot.pdf
TRINITY_DN2395_c0_g1:1028	si_a767	TRINITY_DN2395_c0_g1	1017	1037	1028	-30.10	-19.80	0.6578073089701	9	2-17,1036-1021	1-1,1037-1037[UP5];18-21,1020-1017[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGAAUGGGUCAGUCAAGGACG&GGUUUUUGAUUGAUUCAACUC	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN2395_c0_g1_1028_TPlot.pdf
TRINITY_DN2395_c0_g1:1793	si_a889	TRINITY_DN2395_c0_g1	1782	1802	1793	-23.60	-16.90	0.716101694915254	8.5	1-15,1802-1788	16-21,1787-1782[UP3]	......(((((((((((((((&)))))))))))))))......	CAUGACUGUUGCUAUGUUGAU&AUCAAUAUAGUAAUAAUAAGU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN2395_c0_g1_1793_TPlot.pdf
TRINITY_DN2397_c0_g1:1124	si_a445	TRINITY_DN2397_c0_g1	1113	1135	1124	-27.30	-18.58	0.68058608058608	12	1-5,1135-1131;8-20,1126-1114	6-7,1130-1127[AILt];21-21,1113-1113[UP3]	.(((((((((((((....(((((&)))))--..))))))))))))).	GGACAACAGUUAUUGUUGGUAUC&GAUAU--GAGAUAAUUGUUGUUA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN2397_c0_g1_1124_TPlot.pdf
TRINITY_DN2398_c0_g1:1935	si_s520	TRINITY_DN2398_c0_g1	1924	1944	1935	-24.00	-16.30	0.679166666666667	7	1-6,1944-1939;9-14,1936-1931;16-20,1929-1925	7-8,1938-1937[SIL];15-15,1930-1930[SIL];21-21,1924-1924[UP3]	.(((((.((((((..((((((&))))))..)))))).))))).	UAAUGAAUUCGAAGGAGGAAU&AUUCUUAAUUCGAAAUCAUUU	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN2398_c0_g1_1935_TPlot.pdf
TRINITY_DN2398_c0_g1:1936	si_s519	TRINITY_DN2398_c0_g1	1925	1945	1936	-24.40	-17.10	0.700819672131148	6.5	1-7,1945-1939;10-15,1936-1931;17-21,1929-1925	8-9,1938-1937[SIL];16-16,1930-1930[SIL]	(((((.((((((..(((((((&)))))))..)))))).)))))	AAUGAAUUCGAAGGAGGAAUG&UAUUCUUAAUUCGAAAUCAUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN2398_c0_g1_1936_TPlot.pdf
TRINITY_DN2398_c0_g1:1937	si_s518	TRINITY_DN2398_c0_g1	1926	1946	1937	-24.60	-16.40	0.666666666666667	8	2-8,1945-1939;11-16,1936-1931;18-21,1929-1926	1-1,1946-1946[UP5];9-10,1938-1937[SIL];17-17,1930-1930[SIL]	((((.((((((..(((((((.&.)))))))..)))))).))))	AUGAAUUCGAAGGAGGAAUGG&AUAUUCUUAAUUCGAAAUCAU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN2398_c0_g1_1937_TPlot.pdf
TRINITY_DN2398_c0_g1:537	si_s241	TRINITY_DN2398_c0_g1	526	546	537	-35.20	-23.50	0.667613636363636	11.5	6-19,541-528	1-5,546-542[UP5];20-21,527-526[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAGGGAAGUGCCUAUUCCUGA&GAAUCAAUAGGCAUUUCCCGA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s241_TRINITY_DN2398_c0_g1_537_TPlot.pdf
TRINITY_DN239_c0_g1:5560	si_s890	TRINITY_DN239_c0_g1	5549	5569	5560	-29.50	-19.80	0.671186440677966	14	6-18,5564-5552	1-5,5569-5565[UP5];19-21,5551-5549[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUUGGAGGAGGCCUAUGUCCA&AAUAAAUAGGCUUUCUCUUCA	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN239_c0_g1_5560_TPlot.pdf
TRINITY_DN239_c0_g1:5561	si_s889	TRINITY_DN239_c0_g1	5550	5570	5561	-28.80	-19.80	0.6875	14.5	7-19,5564-5552	1-6,5570-5565[UP5];20-21,5551-5550[UP3]	..(((((((((((((......&......)))))))))))))..	UUGGAGGAGGCCUAUGUCCAA&AAAUAAAUAGGCUUUCUCUUC	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN239_c0_g1_5561_TPlot.pdf
TRINITY_DN239_c0_g1:5563	si_s887	TRINITY_DN239_c0_g1	5552	5572	5563	-26.80	-19.80	0.738805970149254	16.5	9-21,5564-5552	1-8,5572-5565[UP5]	(((((((((((((........&........)))))))))))))	GGAGGAGGCCUAUGUCCAACA&AAAAAUAAAUAGGCUUUCUCU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN239_c0_g1_5563_TPlot.pdf
TRINITY_DN239_c0_g1:5564	si_s886	TRINITY_DN239_c0_g1	5553	5573	5564	-26.50	-18.70	0.705660377358491	18	10-21,5564-5553	1-9,5573-5565[UP5]	((((((((((((.........&.........))))))))))))	GAGGAGGCCUAUGUCCAACAA&UAAAAAUAAAUAGGCUUUCUC	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN239_c0_g1_5564_TPlot.pdf
TRINITY_DN239_c1_g3:2133	si_s489	TRINITY_DN239_c1_g3	2122	2142	2133	-17.90	-13.50	0.754189944134078	7	3-11,2140-2132;14-21,2129-2122	1-2,2142-2141[UP5];12-13,2131-2130[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	UUUGUUUAGUUUUGAAUAAUC&AUUUAUUUAAAUAUAAACAAA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN239_c1_g3_2133_TPlot.pdf
TRINITY_DN239_c1_g4:1108	si_s34	TRINITY_DN239_c1_g4	1098	1117	1108	-23.30	-16.02	0.687553648068669	5.5	1-12,1117-1106;17-21,1102-1098	13-16,1105-1103[AILq]	(((((...-((((((((((((&))))))))))))....)))))	CAGUUUAC-AGGAUUUAGUUG&CAACUAAAUCUUUAAUAAUUG	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN239_c1_g4_1108_TPlot.pdf
TRINITY_DN239_c1_g4:1191	si_a351	TRINITY_DN239_c1_g4	1180	1201	1191	-20.50	-14.42	0.703414634146341	9	1-7,1201-1195;11-21,1190-1180	8-10,1194-1191[AILt]	(((((((((((....(((((((&)))))))-...)))))))))))	AUCAAAAUAGAUUGCGAUAUUU&AAAUAUU-AAUUCUAUUUUGAU	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN239_c1_g4_1191_TPlot.pdf
TRINITY_DN239_c1_g4:1364	si_s90	TRINITY_DN239_c1_g4	1354	1373	1364	-35.30	-23.80	0.674220963172805	6	2-12,1372-1362;14-19,1361-1356	1-1,1373-1373[UP5];13-13,x-x[BULq];20-21,1355-1354[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	AAGAAGCG-AGAAGAAGAGGU&CUUUCUUCUUCUUCGCUUCGG	4	0.999999999990978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN239_c1_g4_1364_TPlot.pdf
TRINITY_DN239_c1_g4:1365	si_s89	TRINITY_DN239_c1_g4	1355	1374	1365	-35.30	-23.80	0.674220963172805	7	3-13,1372-1362;15-20,1361-1356	1-2,1374-1373[UP5];14-14,x-x[BULq];21-21,1355-1355[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	AGAAGCG-AGAAGAAGAGGUA&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN239_c1_g4_1365_TPlot.pdf
TRINITY_DN239_c1_g4:2003	si_a6	TRINITY_DN239_c1_g4	1992	2012	2003	-29.10	-20.50	0.70446735395189	9.5	4-12,2009-2001;15-20,1998-1993	1-3,2012-2010[UP5];13-14,2000-1999[SIL];21-21,1992-1992[UP3]	.((((((..(((((((((...&...)))))))))..)))))).	UGUAGGCAAUCUCUUCGACUU&AAAUUGAAGAGAAAGCCUAUU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN239_c1_g4_2003_TPlot.pdf
TRINITY_DN23_c0_g2:176	si_s108	TRINITY_DN23_c0_g2	165	187	176	-27.60	-18.90	0.684782608695652	7.5	2-4,186-184;5-11,181-175;13-21,173-165	1-1,187-187[UP5];x-x,183-182[BULt];12-12,174-174[SIL]	(((((((((.(((((((..(((.&.)))--))))))).)))))))))	GUUUUUCUAAUUUCCAAUUUCCA&CGGA--UUGGAAAAUAGAAAAAU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN23_c0_g2_176_TPlot.pdf
TRINITY_DN24005_c0_g1:4266	si_s117	TRINITY_DN24005_c0_g1	4255	4275	4266	-24.70	-16.60	0.672064777327935	5.5	1-17,4275-4259	18-21,4258-4255[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGAACUUUUGUUUUUCUAUUU&AAAUAGAAAAAUAGAAGAGUU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN24005_c0_g1_4266_TPlot.pdf
TRINITY_DN24005_c0_g1:4267	si_s116	TRINITY_DN24005_c0_g1	4256	4276	4267	-24.70	-17.50	0.708502024291498	4	1-18,4276-4259	19-21,4258-4256[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAACUUUUGUUUUUCUAUUUU&AAAAUAGAAAAAUAGAAGAGU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN24005_c0_g1_4267_TPlot.pdf
TRINITY_DN24005_c0_g1:4270	si_s113	TRINITY_DN24005_c0_g1	4259	4279	4270	-26.30	-19.40	0.737642585551331	5	3-21,4277-4259	1-2,4279-4278[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	CUUUUGUUUUUCUAUUUUUAC&UGGAAAAUAGAAAAAUAGAAG	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s113_TRINITY_DN24005_c0_g1_4270_TPlot.pdf
TRINITY_DN24005_c0_g1:4272	si_s111	TRINITY_DN24005_c0_g1	4261	4282	4272	-24.80	-16.70	0.673387096774194	4	1-4,4282-4279;5-21,4277-4261	x-x,4278-4278[BULt]	(((((((((((((((((.((((&))))-)))))))))))))))))	UUUGUUUUUCUAUUUUUACAAU&AUUG-GAAAAUAGAAAAAUAGA	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN24005_c0_g1_4272_TPlot.pdf
TRINITY_DN24005_c0_g1:4437	si_s4	TRINITY_DN24005_c0_g1	4426	4446	4437	-21.60	-14.70	0.680555555555555	9	4-11,4443-4436;13-21,4434-4426	1-3,4446-4444[UP5];12-12,4435-4435[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UAGUGAUAGAAAGUAAUGGAC&UUAUAUUACUUAUUAUUACUA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN24005_c0_g1_4437_TPlot.pdf
TRINITY_DN24005_c1_g1:489	si_a337	TRINITY_DN24005_c1_g1	479	502	489	-30.80	-20.70	0.672077922077922	10.5	1-8,502-495;9-16,490-483;18-21,482-479	x-x,494-491[BULt];17-17,x-x[BULq]	((((-((((((((....((((((((&))))))))----)))))))).))))	AAUG-UUUCGGGAAUUACGAGGAAU&AUUCCUUG----UCCCGAAAAUAUU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN24005_c1_g1_489_TPlot.pdf
TRINITY_DN24005_c1_g1:897	si_a322	TRINITY_DN24005_c1_g1	885	906	897	-27.00	-20.00	0.740740740740741	6.5	2-12,905-895;14-19,893-888;20-21,886-885	1-1,906-906[UP5];13-13,894-894[SIL];x-x,887-887[BULt]	((.((((((.(((((((((((.&.))))))))))).))))))-))	GGAGAAUAAUGAGGUCAUGGAG&AUCCAUGAUUUUUUUAUUC-CU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN24005_c1_g1_897_TPlot.pdf
TRINITY_DN24009_c0_g1:130	si_a783	TRINITY_DN24009_c0_g1	119	141	130	-24.70	-19.30	0.781376518218624	8	1-7,141-135;8-21,132-119	x-x,134-133[BULt]	((((((((((((((..(((((((&)))))))--))))))))))))))	GAGUAGAAAGAUGGCUAAGGGUU&AACUCUU--CUAUUUUUCUAUUU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN24009_c0_g1_130_TPlot.pdf
TRINITY_DN2401_c0_g1:1863	si_s80	TRINITY_DN2401_c0_g1	1852	1872	1863	-28.20	-23.60	0.836879432624114	9	4-20,1869-1853	1-3,1872-1870[UP5];21-21,1852-1852[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGAGGAGAAAGGAGAGAGCAG&UUUUUCUUUCCUUUCUUCUUC	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2401_c0_g1_1863_TPlot.pdf
TRINITY_DN2401_c0_g1:1901	si_s73	TRINITY_DN2401_c0_g1	1890	1909	1901	-24.00	-16.10	0.670833333333333	8.5	1-3,1909-1907;5-10,1906-1901;12-21,1899-1890	4-4,x-x[BULq];11-11,1900-1900[SIL]	((((((((((.((((((-(((&))).)))))).))))))))))	GAGGGAGAGACAAGAGG-AGA&UCUAUUUUUUUUCUUUCCUUU	0	0.855235563405547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2401_c0_g1_1901_TPlot.pdf
TRINITY_DN2401_c0_g1:1922	si_s84	TRINITY_DN2401_c0_g1	1910	1932	1922	-32.30	-21.30	0.659442724458204	7	1-7,1932-1926;8-12,1924-1920;14-15,1918-1917;16-21,1915-1910	x-x,1925-1925[BULt];13-13,1919-1919[SIL];x-x,1916-1916[BULt]	((((((.((.(((((.(((((((&)))))))-))))).))-))))))	CGAGGGCAGCAGAGAGGGAGAGA&UCUUUCC-UUUCUUCU-UCUUCG	2	0.999999999999922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2401_c0_g1_1922_TPlot.pdf
TRINITY_DN24025_c1_g1:1444	si_s77	TRINITY_DN24025_c1_g1	1433	1453	1444	-25.50	-17.40	0.68235294117647	8.5	2-9,1452-1445;11-19,1443-1435	1-1,1453-1453[UP5];10-10,1444-1444[SIL];20-21,1434-1433[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UUAGAGAGGGAUGAAGGAAAC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN24025_c1_g1_1444_TPlot.pdf
TRINITY_DN24025_c1_g1:775	si_a462	TRINITY_DN24025_c1_g1	764	784	775	-21.20	-14.60	0.688679245283019	8	1-14,784-771;16-16,769-769	15-15,770-770[SIL];17-21,768-764[UP3]	.....(.((((((((((((((&)))))))))))))).).....	UUCGAAGAUAUUGUAUAUGAC&GUUAUAUAUAAUAUGUAAUUA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN24025_c1_g1_775_TPlot.pdf
TRINITY_DN24025_c1_g1:778	si_a459	TRINITY_DN24025_c1_g1	767	787	778	-23.20	-15.60	0.672413793103448	8	3-17,785-771;19-19,769-769	1-2,787-786[UP5];18-18,770-770[SIL];20-21,768-767[UP3]	..(.(((((((((((((((..&..))))))))))))))).)..	GAAGAUAUUGUAUAUGACAUG&GUUGUUAUAUAUAAUAUGUAA	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN24025_c1_g1_778_TPlot.pdf
TRINITY_DN2402_c0_g1:1063	si_s69	TRINITY_DN2402_c0_g1	1052	1071	1063	-23.40	-15.70	0.670940170940171	9	2-7,1070-1065;9-20,1064-1053	1-1,1071-1071[UP5];8-8,x-x[BULq];21-21,1052-1052[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	CAGAGAGAAGAGG-AGAGGUG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2402_c0_g1_1063_TPlot.pdf
TRINITY_DN2402_c0_g1:1064	si_s68	TRINITY_DN2402_c0_g1	1053	1072	1064	-23.10	-15.70	0.67965367965368	9.5	3-8,1070-1065;10-21,1064-1053	1-2,1072-1071[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	AGAGAGAAGAGG-AGAGGUGC&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2402_c0_g1_1064_TPlot.pdf
TRINITY_DN2402_c0_g1:1065	si_s67	TRINITY_DN2402_c0_g1	1054	1072	1065	-25.60	-17.50	0.68359375	8.5	1-3,1072-1070;5-9,1069-1065;11-21,1064-1054	4-4,x-x[BULq];10-10,x-x[BULq]	(((((((((((-(((((-(((&))).))))).)))))))))))	GAGAGAAGAGG-AGAGG-UGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999977554128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2402_c0_g1_1065_TPlot.pdf
TRINITY_DN2402_c0_g1:1066	si_s83	TRINITY_DN2402_c0_g1	1055	1075	1066	-30.90	-20.40	0.660194174757282	14	7-20,1069-1056	1-6,1075-1070[UP5];21-21,1055-1055[UP3]	.((((((((((((((......&......)))))))))))))).	AGAGAAGAGGAGAGGUGCAAU&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2402_c0_g1_1066_TPlot.pdf
TRINITY_DN2402_c0_g1:1067	si_s82	TRINITY_DN2402_c0_g1	1056	1076	1067	-28.90	-20.20	0.698961937716263	15	8-21,1069-1056	1-7,1076-1070[UP5]	((((((((((((((.......&.......))))))))))))))	GAGAAGAGGAGAGGUGCAAUC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2402_c0_g1_1067_TPlot.pdf
TRINITY_DN2402_c0_g1:1068	si_s81	TRINITY_DN2402_c0_g1	1057	1077	1068	-28.90	-19.10	0.660899653979239	16.5	9-21,1069-1057	1-8,1077-1070[UP5]	(((((((((((((........&........)))))))))))))	AGAAGAGGAGAGGUGCAAUCA&UUUUCUUUCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2402_c0_g1_1068_TPlot.pdf
TRINITY_DN2402_c0_g1:1070	si_s26	TRINITY_DN2402_c0_g1	1058	1079	1070	-26.70	-17.42	0.652434456928839	6.5	1-10,1079-1070;12-13,1068-1067;17-21,1062-1058	11-11,1069-1069[SIL];14-16,1066-1063[AILt]	(((((....((.((((((((((&)))))))))).))-...)))))	GAAGAGGAGAGGUGCAAUCAAU&AUUGAUUGCAACU-AAAUCUUU	2	0.966134296826891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN2402_c0_g1_1070_TPlot.pdf
TRINITY_DN2402_c0_g1:1401	si_s114	TRINITY_DN2402_c0_g1	1390	1410	1401	-26.60	-19.10	0.718045112781955	3	1-15,1410-1396;17-21,1394-1390	16-16,1395-1395[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	UCUUCCGUUUUUUUAUUUUCU&GGAAAAUAGAAAAAUAGAAGA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s114_TRINITY_DN2402_c0_g1_1401_TPlot.pdf
TRINITY_DN2402_c0_g1:165	si_a462	TRINITY_DN2402_c0_g1	150	174	165	-21.20	-15.00	0.707547169811321	15	1-10,174-165;11-19,160-152	x-x,164-161[BULt];20-21,151-150[UP3]	..(((((((((....((((((((((&))))))))))----)))))))))..	UCGUUGCAUAUUCAAUGUGUAUGGC&GUUAUAUAUA----AUAUGUAAUUA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN2402_c0_g1_165_TPlot.pdf
TRINITY_DN2402_c0_g1:166	si_a461	TRINITY_DN2402_c0_g1	151	175	166	-21.50	-15.20	0.706976744186047	15	2-11,174-165;12-20,160-152	1-1,175-175[UP5];x-x,164-161[BULt];21-21,151-151[UP3]	.(((((((((....((((((((((.&.))))))))))----))))))))).	CGUUGCAUAUUCAAUGUGUAUGGCU&UGUUAUAUAUA----AUAUGUAAUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN2402_c0_g1_166_TPlot.pdf
TRINITY_DN2402_c0_g1:1663	si_s12	TRINITY_DN2402_c0_g1	1652	1673	1663	-22.80	-15.20	0.666666666666667	11	4-8,1670-1666;9-21,1664-1652	1-3,1673-1671[UP5];x-x,1665-1665[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	AGUCAGUAUGGUGUAUAGUUCU&CUUAUUAU-UACUAUAUUGAUU	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN2402_c0_g1_1663_TPlot.pdf
TRINITY_DN2402_c0_g1:167	si_a460	TRINITY_DN2402_c0_g1	152	176	167	-21.60	-15.20	0.703703703703704	16	3-12,174-165;13-21,160-152	1-2,176-175[UP5];x-x,164-161[BULt]	(((((((((....((((((((((..&..))))))))))----)))))))))	GUUGCAUAUUCAAUGUGUAUGGCUA&UUGUUAUAUAUA----AUAUGUAAU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN2402_c0_g1_167_TPlot.pdf
TRINITY_DN2402_c0_g1:635	si_a333	TRINITY_DN2402_c0_g1	624	644	635	-30.60	-20.00	0.65359477124183	10	3-15,642-630	1-2,644-643[UP5];16-21,629-624[UP3]	......(((((((((((((..&..)))))))))))))......	UCUCAAGGACAAGGAGUAACC&UUUUAUUCCUUGUCCCGAAAA	3	0.999997540575938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2402_c0_g1_635_TPlot.pdf
TRINITY_DN2402_c0_g1:636	si_a332	TRINITY_DN2402_c0_g1	625	645	636	-30.60	-20.00	0.65359477124183	11	4-16,642-630	1-3,645-643[UP5];17-21,629-625[UP3]	.....(((((((((((((...&...))))))))))))).....	CUCAAGGACAAGGAGUAACCG&UUUUUAUUCCUUGUCCCGAAA	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN2402_c0_g1_636_TPlot.pdf
TRINITY_DN2402_c0_g1:637	si_a331	TRINITY_DN2402_c0_g1	626	646	637	-30.60	-20.00	0.65359477124183	12	5-17,642-630	1-4,646-643[UP5];18-21,629-626[UP3]	....(((((((((((((....&....)))))))))))))....	UCAAGGACAAGGAGUAACCGU&UUUUUUAUUCCUUGUCCCGAA	3	0.999999718089584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2402_c0_g1_637_TPlot.pdf
TRINITY_DN2402_c0_g1:638	si_a330	TRINITY_DN2402_c0_g1	627	647	638	-30.50	-20.00	0.655737704918033	13	6-18,642-630	1-5,647-643[UP5];19-21,629-627[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAAGGACAAGGAGUAACCGUA&UUUUUUUAUUCCUUGUCCCGA	2	0.999966962173071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN2402_c0_g1_638_TPlot.pdf
TRINITY_DN2402_c0_g1:639	si_a329	TRINITY_DN2402_c0_g1	628	648	639	-29.60	-20.00	0.675675675675676	14	7-19,642-630	1-6,648-643[UP5];20-21,629-628[UP3]	..(((((((((((((......&......)))))))))))))..	AAGGACAAGGAGUAACCGUAG&AUUUUUUUAUUCCUUGUCCCG	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2402_c0_g1_639_TPlot.pdf
TRINITY_DN2402_c0_g1:640	si_a328	TRINITY_DN2402_c0_g1	629	649	640	-30.10	-20.00	0.664451827242525	15	8-20,642-630	1-7,649-643[UP5];21-21,629-629[UP3]	.(((((((((((((.......&.......))))))))))))).	AGGACAAGGAGUAACCGUAGC&GAUUUUUUUAUUCCUUGUCCC	3	0.999999640571353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2402_c0_g1_640_TPlot.pdf
TRINITY_DN2402_c0_g1:641	si_a327	TRINITY_DN2402_c0_g1	630	650	641	-28.40	-20.00	0.704225352112676	16	9-21,642-630	1-8,650-643[UP5]	(((((((((((((........&........)))))))))))))	GGACAAGGAGUAACCGUAGCA&UGAUUUUUUUAUUCCUUGUCC	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2402_c0_g1_641_TPlot.pdf
TRINITY_DN2402_c0_g1:823	si_a777	TRINITY_DN2402_c0_g1	812	831	823	-27.00	-17.70	0.655555555555556	6	1-2,831-830;4-7,829-826;9-20,824-813	3-3,x-x[BULq];8-8,825-825[SIL];21-21,812-812[UP3]	.((((((((((((.((((-((&)).)))).)))))))))))).	UAAAGUGGAAGAGCUGAA-CA&UGAUUCAACUCUUCUAUUUUU	2	0.999190583655494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2402_c0_g1_823_TPlot.pdf
TRINITY_DN2402_c0_g1:824	si_a776	TRINITY_DN2402_c0_g1	813	832	824	-27.10	-18.40	0.678966789667897	5	1-3,832-830;5-8,829-826;10-21,824-813	4-4,x-x[BULq];9-9,825-825[SIL]	((((((((((((.((((-(((&))).)))).))))))))))))	AAAGUGGAAGAGCUGAA-CAA&UUGAUUCAACUCUUCUAUUUU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN2402_c0_g1_824_TPlot.pdf
TRINITY_DN2402_c0_g1:825	si_a775	TRINITY_DN2402_c0_g1	814	833	825	-27.20	-17.70	0.650735294117647	6	2-4,832-830;6-9,829-826;11-21,824-814	1-1,833-833[UP5];5-5,x-x[BULq];10-10,825-825[SIL]	(((((((((((.((((-(((.&.))).)))).)))))))))))	AAGUGGAAGAGCUGAA-CAAC&AUUGAUUCAACUCUUCUAUUU	2	0.999159789990334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN2402_c0_g1_825_TPlot.pdf
TRINITY_DN2402_c0_g1:85	si_a888	TRINITY_DN2402_c0_g1	73	94	85	-22.80	-14.90	0.653508771929825	10	3-12,92-83;13-19,81-75	1-2,94-93[UP5];x-x,82-82[BULt];20-21,74-73[UP3]	..(((((((.((((((((((..&..))))))))))-)))))))..	GGUGUUGUUAACUGUGUUGACU&AAUCAAUAUAGU-AAUAAUAAG	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN2402_c0_g1_85_TPlot.pdf
TRINITY_DN2402_c0_g1:86	si_a887	TRINITY_DN2402_c0_g1	74	95	86	-22.90	-14.90	0.650655021834061	10	4-13,92-83;14-20,81-75	1-3,95-93[UP5];x-x,82-82[BULt];21-21,74-74[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	GUGUUGUUAACUGUGUUGACUA&CAAUCAAUAUAGU-AAUAAUAA	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN2402_c0_g1_86_TPlot.pdf
TRINITY_DN2402_c0_g1:862	si_a148	TRINITY_DN2402_c0_g1	850	871	862	-30.30	-20.40	0.673267326732673	12.5	1-10,871-862;15-19,856-852	11-14,861-857[AILt];20-21,851-850[UP3]	..(((((.....((((((((((&))))))))))-....)))))..	UCGACCUGGGCUACGACGACGG&UCGUUGUUGU-UUUAAGGUCAA	2	0.997668572368313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN2402_c0_g1_862_TPlot.pdf
TRINITY_DN24031_c0_g1:208	si_a767	TRINITY_DN24031_c0_g1	197	217	208	-30.10	-22.50	0.747508305647841	6	1-18,217-200	19-21,199-197[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCUUUGAGUCAAUCAGAAGCU&GGUUUUUGAUUGAUUCAACUC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN24031_c0_g1_208_TPlot.pdf
TRINITY_DN24031_c0_g1:209	si_a766	TRINITY_DN24031_c0_g1	198	218	209	-30.50	-22.80	0.747540983606557	6.5	2-19,217-200	1-1,218-218[UP5];20-21,199-198[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CUUUGAGUCAAUCAGAAGCUG&GGGUUUUUGAUUGAUUCAACU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN24031_c0_g1_209_TPlot.pdf
TRINITY_DN2403_c0_g1:1182	si_a326	TRINITY_DN2403_c0_g1	1171	1191	1182	-26.20	-18.10	0.690839694656489	6	1-5,1191-1187;8-12,1184-1180;14-20,1178-1172	6-7,1186-1185[SIL];13-13,1179-1179[SIL];21-21,1171-1171[UP3]	.(((((((.(((((..(((((&)))))..))))).))))))).	AACAAGGAUUAAAAUUAUCAU&AUGAUUUUUUUAUUCCUUGUC	4	0.999991392983814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2403_c0_g1_1182_TPlot.pdf
TRINITY_DN2403_c0_g1:1775	si_s68	TRINITY_DN2403_c0_g1	1764	1789	1775	-23.10	-15.20	0.658008658008658	14.5	1-6,1789-1784;7-18,1778-1767	x-x,1783-1779[BULt];19-21,1766-1764[UP3]	...((((((((((((.....((((((&))))))-----))))))))))))...	CUUGAAGAAAAAUGGUUUACAAGUUG&CAACUU-----CUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2403_c0_g1_1775_TPlot.pdf
TRINITY_DN2403_c0_g1:2079	si_a487	TRINITY_DN2403_c0_g1	2068	2088	2079	-24.80	-17.00	0.685483870967742	11.5	6-21,2083-2068	1-5,2088-2084[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGACGACGUAUUUUUGACA&UAUAUAGAAUAUGUCGUUUUU	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN2403_c0_g1_2079_TPlot.pdf
TRINITY_DN24046_c0_g1:367	si_s489	TRINITY_DN24046_c0_g1	355	376	367	-17.90	-12.80	0.715083798882682	6	2-13,375-364;14-19,362-357	1-1,376-376[UP5];x-x,363-363[BULt];20-21,356-355[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	CAUGUUUAUUGUUUAAAUGAAA&AUUUAUUUAAAUA-UAAACAAA	1	0.0417307489907761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN24046_c0_g1_367_TPlot.pdf
TRINITY_DN2404_c0_g1:621	si_a769	TRINITY_DN2404_c0_g1	610	631	621	-26.70	-17.52	0.656179775280899	10.5	1-6,631-626;10-21,621-610	7-9,625-622[AILt]	((((((((((((....((((((&))))))-...))))))))))))	AAGAGUUGGAUUUGAGCGAAAA&UUUUUG-AUUGAUUCAACUCUU	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN2404_c0_g1_621_TPlot.pdf
TRINITY_DN24050_c0_g2:127	si_a891	TRINITY_DN24050_c0_g2	115	136	127	-22.90	-15.80	0.689956331877729	10.5	1-10,136-127;12-18,124-118	11-11,126-125[AILt];19-21,117-115[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	GCUCUUGUUGGAUGCUAUGUUG&CAAUAUAGUA-AUAAUAAGUAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN24050_c0_g2_127_TPlot.pdf
TRINITY_DN24050_c0_g2:128	si_a890	TRINITY_DN24050_c0_g2	116	137	128	-23.80	-17.20	0.722689075630252	9	1-11,137-127;13-19,124-118	12-12,126-125[AILt];20-21,117-116[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	CUCUUGUUGGAUGCUAUGUUGA&UCAAUAUAGUA-AUAAUAAGUA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN24050_c0_g2_128_TPlot.pdf
TRINITY_DN24050_c0_g2:129	si_a889	TRINITY_DN24050_c0_g2	117	138	129	-23.60	-18.50	0.783898305084746	7	1-12,138-127;14-20,124-118	13-13,126-125[AILt];21-21,117-117[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	UCUUGUUGGAUGCUAUGUUGAU&AUCAAUAUAGUA-AUAAUAAGU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN24050_c0_g2_129_TPlot.pdf
TRINITY_DN24050_c0_g2:130	si_a888	TRINITY_DN24050_c0_g2	118	139	130	-22.80	-18.60	0.815789473684211	6	2-13,138-127;15-21,124-118	1-1,139-139[UP5];14-14,126-125[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	CUUGUUGGAUGCUAUGUUGAUG&AAUCAAUAUAGUA-AUAAUAAG	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN24050_c0_g2_130_TPlot.pdf
TRINITY_DN24050_c0_g2:139	si_a878	TRINITY_DN24050_c0_g2	129	148	139	-26.70	-21.20	0.794007490636704	8.5	3-11,146-138;13-21,137-129	1-2,148-147[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	CUAUGUUGA-UGCGGCUGAUC&AUUUAGUUGCAAUCAAUAUAG	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN24050_c0_g2_139_TPlot.pdf
TRINITY_DN24057_c0_g1:147	si_s434	TRINITY_DN24057_c0_g1	136	156	147	-21.50	-14.70	0.683720930232558	12.5	7-21,150-136	1-6,156-151[UP5]	(((((((((((((((......&......)))))))))))))))	UAUAUAGUAUGUAGUAUCAAC&ACAAUAAUUACAUAUUAUAUA	1	0.0410221463762213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN24057_c0_g1_147_TPlot.pdf
TRINITY_DN2405_c0_g1:992	si_a414	TRINITY_DN2405_c0_g1	981	1000	992	-18.10	-12.50	0.69060773480663	7	1-8,1000-993;12-21,990-981	9-11,992-991[AILq]	((((((((((..-((((((((&))))))))...))))))))))	UAUAUUUAUUAU-AUAUGAAC&GUUUAUAUUUAAAUAAAUAUA	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN2405_c0_g1_992_TPlot.pdf
TRINITY_DN2406_c0_g1:3020	si_s76	TRINITY_DN2406_c0_g1	3008	3029	3020	-23.60	-15.80	0.669491525423729	5.5	1-14,3029-3016;16-20,3013-3009	15-15,3015-3014[AILt];21-21,3008-3008[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	UGGAAACUGAAAGAAGAAGAAU&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2406_c0_g1_3020_TPlot.pdf
TRINITY_DN2406_c0_g1:3021	si_s75	TRINITY_DN2406_c0_g1	3009	3030	3021	-24.00	-16.90	0.704166666666667	4.5	1-15,3030-3016;17-21,3013-3009	16-16,3015-3014[AILt]	(((((..(((((((((((((((&)))))))))))))))-.)))))	GGAAACUGAAAGAAGAAGAAUA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2406_c0_g1_3021_TPlot.pdf
TRINITY_DN2406_c0_g1:5461	si_a311	TRINITY_DN2406_c0_g1	5450	5469	5461	-32.70	-22.50	0.688073394495413	9	1-8,5469-5462;11-19,5460-5452	9-10,5461-5461[AILq];20-21,5451-5450[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	AUUCAUGGAUGC-UUCAGGCG&CGCUUGGAUUUAUCCAUGAUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN2406_c0_g1_5461_TPlot.pdf
TRINITY_DN2406_c0_g1:5462	si_a309	TRINITY_DN2406_c0_g1	5452	5471	5462	-33.60	-24.00	0.714285714285714	7.5	2-10,5470-5462;13-21,5460-5452	1-1,5471-5471[UP5];11-12,5461-5461[AILq]	(((((((((.-(((((((((.&.)))))))))..)))))))))	UCAUGGAUGC-UUCAGGCGAU&UUCGCUUGGAUUUAUCCAUGA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN2406_c0_g1_5462_TPlot.pdf
TRINITY_DN2407_c0_g1:1130	si_a418	TRINITY_DN2407_c0_g1	1120	1139	1130	-21.20	-14.40	0.679245283018868	8.5	4-16,1136-1124;18-21,1123-1120	1-3,1139-1137[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	GUCC-AUAUUUGUUUAGAAUU&AUAUUUAAAUAAAUAUAGGAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN2407_c0_g1_1130_TPlot.pdf
TRINITY_DN2407_c0_g1:813	si_s155	TRINITY_DN2407_c0_g1	802	822	813	-42.00	-29.10	0.692857142857143	10	5-11,818-812;13-16,811-808;17-21,806-802	1-4,822-819[UP5];12-12,x-x[BULq];x-x,807-807[BULt]	(((((.((((-(((((((....&....))))))).))))-)))))	CCCUGAGCCA-GAACCUCAUCC&AAAGGAGGUUCAUGGC-CAGGG	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN2407_c0_g1_813_TPlot.pdf
TRINITY_DN24094_c0_g1:1679	si_s80	TRINITY_DN24094_c0_g1	1668	1688	1679	-28.20	-20.30	0.719858156028369	15	8-21,1681-1668	1-7,1688-1682[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGAAGAGAGGAGUGCCAUA&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999399423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN24094_c0_g1_1679_TPlot.pdf
TRINITY_DN24094_c0_g1:2009	si_a638	TRINITY_DN24094_c0_g1	1998	2018	2009	-24.40	-16.50	0.676229508196721	10.5	3-16,2016-2003	1-2,2018-2017[UP5];17-21,2002-1998[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUCAGUGCUCAGAAAGAUCCC&UCGAUUUUUUUGAGUAAUAUA	2	0.998510531359226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN24094_c0_g1_2009_TPlot.pdf
TRINITY_DN24094_c0_g1:2490	si_s357	TRINITY_DN24094_c0_g1	2473	2499	2490	-28.70	-21.00	0.731707317073171	9	3-16,2497-2484;17-21,2477-2473	1-2,2499-2498[UP5];x-x,2483-2478[BULt]	(((((......((((((((((((((..&..))))))))))))))------)))))	AUCGGAACUUCUUCAAUCUAUUUCUCA&AAAGAAAUAGAUUGAA------CCGAU	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN24094_c0_g1_2490_TPlot.pdf
TRINITY_DN24119_c0_g1:323	si_s397	TRINITY_DN24119_c0_g1	312	332	323	-32.10	-20.88	0.650467289719626	8	1-9,332-324;13-21,320-312	10-12,323-321[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	UUUUUCGUCACAUUUGGAGUG&CAUUCCAAGGAAGACGAAAAA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN24119_c0_g1_323_TPlot.pdf
TRINITY_DN24129_c0_g1:110	si_s894	TRINITY_DN24129_c0_g1	99	119	110	-29.10	-19.00	0.652920962199313	11.5	3-11,117-109;13-17,107-103	1-2,119-118[UP5];12-12,108-108[SIL];18-21,102-99[UP3]	....(((((.(((((((((..&..))))))))).)))))....	UGUAUGGAGUGGAAGCCUGGA&AAUAGGCUUUCUCUUCAAUUU	0	0.439734198608399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN24129_c0_g1_110_TPlot.pdf
TRINITY_DN24152_c0_g1:117	si_a22	TRINITY_DN24152_c0_g1	106	126	117	-23.50	-15.30	0.651063829787234	11	6-20,121-107	1-5,126-122[UP5];21-21,106-106[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUUGGAGCUAAAAAUACUUUU&CUAUUUAUUUUUAGUUCUAAG	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN24152_c0_g1_117_TPlot.pdf
TRINITY_DN2418_c0_g1:631	si_a409	TRINITY_DN2418_c0_g1	620	646	631	-19.50	-12.90	0.661538461538462	18	1-9,646-638;10-20,631-621	x-x,637-632[BULt];21-21,620-620[UP3]	.(((((((((((......(((((((((&)))))))))------))))))))))).	AUAUUUAAAUAUUCAAAAGGGCGAGAC&GUUUUGUUU------AUAUUUAAAUAA	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2418_c0_g1_631_TPlot.pdf
TRINITY_DN2418_c0_g1:743	si_s26	TRINITY_DN2418_c0_g1	732	753	743	-26.70	-17.50	0.655430711610487	7.5	1-6,753-748;8-13,745-740;16-21,737-732	7-7,747-746[AILt];14-15,739-738[SIL]	((((((..((((((..((((((&))))))-.))))))..))))))	AGAGAUCCAGUUGCUUAUCAGU&AUUGAU-UGCAACUAAAUCUUU	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN2418_c0_g1_743_TPlot.pdf
TRINITY_DN2418_c0_g1:746	si_s23	TRINITY_DN2418_c0_g1	735	756	746	-27.00	-17.70	0.655555555555556	7.5	1-9,756-748;11-16,745-740;19-21,737-735	10-10,747-746[AILt];17-18,739-738[SIL]	(((..((((((..(((((((((&)))))))))-.))))))..)))	GAUCCAGUUGCUUAUCAGUAUG&UAUAUUGAU-UGCAACUAAAUC	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN2418_c0_g1_746_TPlot.pdf
TRINITY_DN2419_c0_g1:1193	si_s87	TRINITY_DN2419_c0_g1	1181	1202	1193	-32.90	-21.50	0.653495440729483	10.5	4-18,1199-1185;19-21,1183-1181	1-3,1202-1200[UP5];x-x,1184-1184[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	AAGCCGGGGGAGGAGGAGGUCG&UUCCUUUCUUCUUCUUCG-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2419_c0_g1_1193_TPlot.pdf
TRINITY_DN2419_c0_g1:2628	si_a445	TRINITY_DN2419_c0_g1	2614	2637	2628	-27.30	-17.90	0.655677655677656	11.5	1-11,2637-2627;13-16,2625-2622;17-20,2618-2615	12-12,2626-2626[SIL];x-x,2621-2619[BULt];21-21,2614-2614[UP3]	.((((...((((.(((((((((((&))))))))))).))))---)))).	GGGCGCUUGCAGAUGUCUCGUGUC&GAUAUGAGAUAAUUGU---UGUUA	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN2419_c0_g1_2628_TPlot.pdf
TRINITY_DN2419_c0_g1:2632	si_a441	TRINITY_DN2419_c0_g1	2621	2644	2632	-29.30	-19.50	0.665529010238908	12.5	1-6,2644-2639;7-15,2635-2627;17-20,2625-2622	x-x,2638-2636[BULt];16-16,2626-2626[SIL];21-21,2621-2621[UP3]	.((((.(((((((((...((((((&))))))---))))))))).)))).	UGCAGAUGUCUCGUGUCUUCCGAC&GUUGGA---UAUGAGAUAAUUGUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN2419_c0_g1_2632_TPlot.pdf
TRINITY_DN2419_c0_g1:3130	si_a637	TRINITY_DN2419_c0_g1	3118	3139	3130	-25.80	-18.70	0.724806201550388	9	1-12,3139-3128;15-19,3124-3120	13-14,3127-3125[AILt];20-21,3119-3118[UP3]	..(((((...((((((((((((&))))))))))))-..)))))..	UCGUUGCGAAGAAAGAAUCGAC&GUCGAUUUUUUU-GAGUAAUAU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2419_c0_g1_3130_TPlot.pdf
TRINITY_DN2419_c0_g1:3131	si_a636	TRINITY_DN2419_c0_g1	3119	3140	3131	-26.30	-19.50	0.741444866920152	6.5	1-13,3140-3128;16-20,3124-3120	14-15,3127-3125[AILt];21-21,3119-3119[UP3]	.(((((...(((((((((((((&)))))))))))))-..))))).	CGUUGCGAAGAAAGAAUCGACA&UGUCGAUUUUUUU-GAGUAAUA	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2419_c0_g1_3131_TPlot.pdf
TRINITY_DN2419_c0_g1:3132	si_a635	TRINITY_DN2419_c0_g1	3120	3141	3132	-26.10	-19.30	0.739463601532567	6.5	2-14,3140-3128;17-21,3124-3120	1-1,3141-3141[UP5];15-16,3127-3125[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	GUUGCGAAGAAAGAAUCGACAC&AUGUCGAUUUUUUU-GAGUAAU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2419_c0_g1_3132_TPlot.pdf
TRINITY_DN2419_c0_g1:3133	si_a634	TRINITY_DN2419_c0_g1	3121	3142	3133	-26.40	-17.90	0.678030303030303	8	3-15,3140-3128;18-21,3124-3121	1-2,3142-3141[UP5];16-17,3127-3125[AILt]	((((...(((((((((((((..&..)))))))))))))-..))))	UUGCGAAGAAAGAAUCGACACA&UAUGUCGAUUUUUUU-GAGUAA	2	0.999843442746574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN2419_c0_g1_3133_TPlot.pdf
TRINITY_DN2419_c0_g1:3814	si_s630	TRINITY_DN2419_c0_g1	3800	3822	3814	-35.60	-23.20	0.651685393258427	8.5	1-7,3822-3816;9-13,3815-3811;14-21,3807-3800	8-8,x-x[BULq];x-x,3810-3808[BULt]	((((((((...(((((-(((((((&))))))).)))))---))))))))	GCAAACGCAUCCUGCG-GGAGAUU&GAUCUUUUCGUAG---GCGUUUGC	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN2419_c0_g1_3814_TPlot.pdf
TRINITY_DN241_c0_g1:1067	si_s437	TRINITY_DN241_c0_g1	1050	1076	1067	-19.70	-13.00	0.65989847715736	16	1-12,1076-1065;13-19,1058-1052	x-x,1064-1059[BULt];20-21,1051-1050[UP3]	..(((((((......((((((((((((&))))))))))))------)))))))..	UGAUGUGUAUCAUAUAUAUGUAAUUGU&AUAAUUACAUAU------UAUAUAUAA	2	0.999469858280925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN241_c0_g1_1067_TPlot.pdf
TRINITY_DN241_c0_g2:1296	si_s525	TRINITY_DN241_c0_g2	1285	1305	1296	-24.00	-17.20	0.716666666666667	7.5	2-9,1304-1297;11-21,1295-1285	1-1,1305-1305[UP5];10-10,1296-1296[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	GUCAGAGAUGAAUUUGGGUUU&UAAUUCGAAAUCAUUUUUGAU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN241_c0_g2_1296_TPlot.pdf
TRINITY_DN241_c0_g2:694	si_s717	TRINITY_DN241_c0_g2	683	705	694	-30.10	-21.70	0.720930232558139	7.5	1-7,705-699;9-21,695-683	8-8,698-696[AILt]	(((((((((((((...(((((((&)))))))--.)))))))))))))	UAGAUGAUAUCUUAGGUCCUGUU&AACAGGG--AAAGAUAUUAUCUA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN241_c0_g2_694_TPlot.pdf
TRINITY_DN241_c0_g2:805	si_s4	TRINITY_DN241_c0_g2	794	814	805	-21.60	-15.70	0.726851851851852	8	3-11,812-804;13-21,802-794	1-2,814-813[UP5];12-12,803-803[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	UGGUGGUGAAAAGUGAUAUCU&UUAUAUUACUUAUUAUUACUA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN241_c0_g2_805_TPlot.pdf
TRINITY_DN241_c0_g2:806	si_s3	TRINITY_DN241_c0_g2	795	815	806	-21.20	-14.50	0.683962264150943	9	4-12,812-804;14-21,802-795	1-3,815-813[UP5];13-13,803-803[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GGUGGUGAAAAGUGAUAUCUC&UUUAUAUUACUUAUUAUUACU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN241_c0_g2_806_TPlot.pdf
TRINITY_DN241_c0_g2:932	si_a183	TRINITY_DN241_c0_g2	921	940	932	-30.10	-19.70	0.654485049833887	4.5	1-8,940-933;10-14,932-928;16-21,926-921	9-9,x-x[BULq];15-15,927-927[SIL]	((((((.(((((-((((((((&)))))))).))))).))))))	AACAGGUGAAGA-GUUAUCUA&UAGAUAAUAUCUUUCCCUGUU	2	0.980896339800985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN241_c0_g2_932_TPlot.pdf
TRINITY_DN241_c0_g2:933	si_a181	TRINITY_DN241_c0_g2	923	942	933	-32.00	-22.10	0.690625	4.5	1-10,942-933;12-16,932-928;18-21,926-923	11-11,x-x[BULq];17-17,927-927[SIL]	((((.(((((-((((((((((&)))))))))).))))).))))	CAGGUGAAGA-GUUAUCUAGA&UCUAGAUAAUAUCUUUCCCUG	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN241_c0_g2_933_TPlot.pdf
TRINITY_DN2420_c0_g1:1069	si_s769	TRINITY_DN2420_c0_g1	1057	1078	1069	-27.00	-18.20	0.674074074074074	7	2-6,1077-1073;8-13,1071-1066;15-21,1063-1057	1-1,1078-1078[UP5];7-7,1072-1072[SIL];14-14,1065-1064[AILt]	(((((((..((((((.(((((.&.))))).))))))-.)))))))	GUGGCGAGCGGUAAUAAAUCGG&ACGAUUAAUUACU-AUUGCUAU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN2420_c0_g1_1069_TPlot.pdf
TRINITY_DN2421_c0_g2:732	si_a414	TRINITY_DN2421_c0_g2	721	741	732	-18.10	-12.50	0.69060773480663	11	1-10,741-732;13-18,729-724	11-12,731-730[SIL];19-21,723-721[UP3]	...((((((..((((((((((&))))))))))..))))))...	AAAGUUUGUCAGAAUGUGAAC&GUUUAUAUUUAAAUAAAUAUA	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN2421_c0_g2_732_TPlot.pdf
TRINITY_DN2421_c0_g2:956	si_a789	TRINITY_DN2421_c0_g2	945	965	956	-24.80	-16.20	0.653225806451613	6.5	1-16,965-950	17-21,949-945[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAGCUGAAAUAGAAAAAUGGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2421_c0_g2_956_TPlot.pdf
TRINITY_DN24234_c0_g1:377	si_s8	TRINITY_DN24234_c0_g1	365	385	377	-21.30	-14.80	0.694835680751174	6.5	1-9,385-377;11-15,376-372;16-21,370-365	10-10,x-x[BULq];x-x,371-371[BULt]	((((((.(((((-(((((((((&))))))))).)))))-))))))	GAUGUAGGUGAU-AUGAGUGAU&AUUACUUAUUAUUAC-UAUAUU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN24234_c0_g1_377_TPlot.pdf
TRINITY_DN24234_c0_g1:378	si_s6	TRINITY_DN24234_c0_g1	368	387	378	-21.70	-15.10	0.695852534562212	8	1-11,387-377;13-18,376-371	12-12,x-x[BULq];19-21,370-368[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GUAGGUGAU-AUGAGUGAUAU&AUAUUACUUAUUAUUACUAUA	1	0.0799081743119416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN24234_c0_g1_378_TPlot.pdf
TRINITY_DN2423_c0_g1:832	si_a142	TRINITY_DN2423_c0_g1	821	841	832	-23.50	-15.70	0.668085106382979	15	6-17,836-825	1-5,841-837[UP5];18-21,824-821[UP3]	....((((((((((((.....&.....))))))))))))....	CAGCAGCGACAGCGAUGAAGC&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2423_c0_g1_832_TPlot.pdf
TRINITY_DN2424_c0_g1:1924	si_a508	TRINITY_DN2424_c0_g1	1913	1934	1924	-36.30	-24.50	0.674931129476584	7	2-7,1933-1928;8-17,1926-1917	1-1,1934-1934[UP5];x-x,1927-1927[BULt];18-21,1916-1913[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	CGAAACAUUCCAAGUGAAGACA&CGUCUUC-CUUGGAAUGUAAGG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN2424_c0_g1_1924_TPlot.pdf
TRINITY_DN2424_c0_g1:3178	si_s352	TRINITY_DN2424_c0_g1	3167	3187	3178	-27.20	-18.10	0.665441176470588	4.5	1-20,3187-3168	21-21,3167-3167[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GUCAGUUUAUUUUUUUAUUUU&GAGAUAAAGAAAUAGAUUGAA	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN2424_c0_g1_3178_TPlot.pdf
TRINITY_DN2424_c0_g1:4236	si_s397	TRINITY_DN2424_c0_g1	4225	4246	4236	-32.10	-22.70	0.707165109034268	7.5	1-9,4246-4238;10-16,4236-4230	x-x,4237-4237[BULt];17-21,4229-4225[UP3]	.....(((((((.(((((((((&)))))))))-))))))).....	AAAUGUGUCUUCACUUGGAAUG&CAUUCCAAG-GAAGACGAAAAA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN2424_c0_g1_4236_TPlot.pdf
TRINITY_DN2424_c0_g1:4240	si_s394	TRINITY_DN2424_c0_g1	4228	4249	4240	-33.40	-24.20	0.724550898203593	7.5	3-12,4247-4238;13-19,4236-4230	1-2,4249-4248[UP5];x-x,4237-4237[BULt];20-21,4229-4228[UP3]	..(((((((.((((((((((..&..))))))))))-)))))))..	UGUGUCUUCACUUGGAAUGUUU&UUACAUUCCAAG-GAAGACGAA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s394_TRINITY_DN2424_c0_g1_4240_TPlot.pdf
TRINITY_DN2424_c0_g1:4291	si_s122	TRINITY_DN2424_c0_g1	4281	4300	4291	-28.30	-19.90	0.703180212014134	4	1-16,4300-4285;20-21,4282-4281	17-19,4284-4283[AILq]	((..-((((((((((((((((&))))))))))))))))...))	GAGA-AACUCUUUUAUUUUUC&GAAAAAUAGAAGAGUUGAAUC	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN2424_c0_g1_4291_TPlot.pdf
TRINITY_DN2424_c0_g1:4292	si_s121	TRINITY_DN2424_c0_g1	4281	4301	4292	-27.00	-18.90	0.7	6	2-17,4300-4285	1-1,4301-4301[UP5];18-21,4284-4281[UP3]	....((((((((((((((((.&.))))))))))))))))....	GAGAAACUCUUUUAUUUUUCA&AGAAAAAUAGAAGAGUUGAAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN2424_c0_g1_4292_TPlot.pdf
TRINITY_DN2424_c0_g1:4295	si_s118	TRINITY_DN2424_c0_g1	4284	4304	4295	-26.40	-18.90	0.715909090909091	8.5	5-20,4300-4285	1-4,4304-4301[UP5];21-21,4284-4284[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAACUCUUUUAUUUUUCAAGC&AAUAGAAAAAUAGAAGAGUUG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN2424_c0_g1_4295_TPlot.pdf
TRINITY_DN2424_c0_g1:4296	si_s117	TRINITY_DN2424_c0_g1	4285	4305	4296	-24.70	-18.50	0.748987854251012	9.5	6-21,4300-4285	1-5,4305-4301[UP5]	((((((((((((((((.....&.....))))))))))))))))	AACUCUUUUAUUUUUCAAGCA&AAAUAGAAAAAUAGAAGAGUU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN2424_c0_g1_4296_TPlot.pdf
TRINITY_DN2424_c0_g1:4297	si_s116	TRINITY_DN2424_c0_g1	4286	4306	4297	-24.70	-17.60	0.712550607287449	11.5	7-21,4300-4286	1-6,4306-4301[UP5]	(((((((((((((((......&......)))))))))))))))	ACUCUUUUAUUUUUCAAGCAU&AAAAUAGAAAAAUAGAAGAGU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN2424_c0_g1_4297_TPlot.pdf
TRINITY_DN24251_c1_g1:192	si_a503	TRINITY_DN24251_c1_g1	181	201	192	-32.10	-23.80	0.741433021806854	8	1-16,201-186	17-21,185-181[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAAACAAGGGAGACGAGGAA&UUUUUCGUCUUCCUUGGAAUG	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN24251_c1_g1_192_TPlot.pdf
TRINITY_DN24255_c0_g1:367	si_a19	TRINITY_DN24255_c0_g1	356	377	367	-27.00	-19.62	0.726666666666667	11	1-7,377-371;11-20,366-357	8-10,370-367[AILt];21-21,356-356[UP3]	.((((((((((....(((((((&)))))))-...)))))))))).	UGGACUGAAAAGUUCGUAGGCU&AGCCUAU-UUAUUUUUAGUUCU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN24255_c0_g1_367_TPlot.pdf
TRINITY_DN2425_c0_g1:11291	si_a814	TRINITY_DN2425_c0_g1	11280	11299	11291	-32.90	-21.80	0.662613981762918	5.5	1-2,11299-11298;4-18,11297-11283	3-3,x-x[BULq];19-21,11282-11280[UP3]	...(((((((((((((((-((&)).)))))))))))))))...	GAGUCUUUCUUCUUCUUC-CU&AGCGAAGAAGAAGAAAGGAAA	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN2425_c0_g1_11291_TPlot.pdf
TRINITY_DN2425_c0_g1:2182	si_a870	TRINITY_DN2425_c0_g1	2171	2191	2182	-24.80	-18.50	0.745967741935484	10.5	1-5,2191-2187;8-19,2184-2173	6-7,2186-2185[SIL];20-21,2172-2171[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	AAUGCAACUGGGUCGGUGAUG&UAUUAAAGAUUUAGUUGCAAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN2425_c0_g1_2182_TPlot.pdf
TRINITY_DN2425_c0_g1:4753	si_s68	TRINITY_DN2425_c0_g1	4742	4763	4753	-23.10	-15.20	0.658008658008658	12.5	1-1,4763-4763;4-8,4760-4756;10-21,4753-4742	2-3,4762-4761[SIL];9-9,4755-4754[AILt]	((((((((((((..(((((..(&)..)))))-.))))))))))))	AAAGAAAAGAGGGGGGGAGGGG&CAACUUCU-AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2425_c0_g1_4753_TPlot.pdf
TRINITY_DN2425_c0_g1:4758	si_s80	TRINITY_DN2425_c0_g1	4747	4767	4758	-28.20	-20.70	0.734042553191489	11.5	4-20,4764-4748	1-3,4767-4765[UP5];21-21,4747-4747[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGAGGGGGGGAGGGGACUU&UUUUUCUUUCCUUUCUUCUUC	4	0.999999999999371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2425_c0_g1_4758_TPlot.pdf
TRINITY_DN2425_c0_g1:6396	si_a110	TRINITY_DN2425_c0_g1	6385	6405	6396	-27.80	-19.10	0.68705035971223	13	7-20,6399-6386	1-6,6405-6400[UP5];21-21,6385-6385[UP3]	.((((((((((((((......&......)))))))))))))).	CAAACGGGCUCGUAUCUUCAC&GAUAAAAUACGAGCUUGUUUU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN2425_c0_g1_6396_TPlot.pdf
TRINITY_DN2425_c0_g1:6397	si_a109	TRINITY_DN2425_c0_g1	6386	6406	6397	-28.50	-19.10	0.670175438596491	14	8-21,6399-6386	1-7,6406-6400[UP5]	((((((((((((((.......&.......))))))))))))))	AAACGGGCUCGUAUCUUCACA&AGAUAAAAUACGAGCUUGUUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN2425_c0_g1_6397_TPlot.pdf
TRINITY_DN2425_c0_g1:6399	si_a107	TRINITY_DN2425_c0_g1	6388	6403	6399	-30.50	-20.30	0.665573770491803	11	1-5,6403-6399;11-21,6398-6388	6-10,x-x[BULq]	(((((((((((-----(((((&))))).....)))))))))))	ACGGGCUCGUA-----UCUUC&GAAGAUAAAAUACGAGCUUGU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a107_TRINITY_DN2425_c0_g1_6399_TPlot.pdf
TRINITY_DN2425_c0_g1:6688	si_a193	TRINITY_DN2425_c0_g1	6677	6697	6688	-30.90	-20.40	0.660194174757282	11.5	2-15,6696-6683	1-1,6697-6697[UP5];16-21,6682-6677[UP3]	......((((((((((((((.&.))))))))))))))......	GCGCAAGGUGGAUAGGGAGGC&CUUUCCCUGUUCACUAAUAAA	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN2425_c0_g1_6688_TPlot.pdf
TRINITY_DN2425_c0_g1:9190	si_a406	TRINITY_DN2425_c0_g1	9178	9199	9190	-19.80	-13.90	0.702020202020202	9	1-12,9199-9188;13-18,9186-9181	x-x,9187-9187[BULt];19-21,9180-9178[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AUAAAGUGUCAAACAGAACGGU&AUUGUUUUGUUU-AUAUUUAAA	2	0.999999856484734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2425_c0_g1_9190_TPlot.pdf
TRINITY_DN2425_c0_g1:9191	si_a405	TRINITY_DN2425_c0_g1	9179	9200	9191	-19.80	-14.10	0.712121212121212	8	2-13,9199-9188;14-19,9186-9181	1-1,9200-9200[UP5];x-x,9187-9187[BULt];20-21,9180-9179[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	UAAAGUGUCAAACAGAACGGUA&AAUUGUUUUGUUU-AUAUUUAA	3	0.999999999912465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2425_c0_g1_9191_TPlot.pdf
TRINITY_DN2425_c0_g1:9352	si_a502	TRINITY_DN2425_c0_g1	9342	9361	9352	-32.10	-21.20	0.660436137071651	6.5	1-14,9361-9348;17-18,9346-9345	15-16,9347-9347[AILq];19-21,9344-9342[UP3]	...((.-((((((((((((((&))))))))))))))..))...	GGACCC-GGAAGACGAAGAAU&GUUUUUCGUCUUCCUUGGAAU	3	0.999999999999851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2425_c0_g1_9352_TPlot.pdf
TRINITY_DN2425_c0_g2:486	si_a109	TRINITY_DN2425_c0_g2	475	495	486	-28.50	-19.10	0.670175438596491	14	8-21,488-475	1-7,495-489[UP5]	((((((((((((((.......&.......))))))))))))))	AAACGGGCUCGUAUCUUCACA&AGAUAAAAUACGAGCUUGUUU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN2425_c0_g2_486_TPlot.pdf
TRINITY_DN2425_c0_g2:488	si_a107	TRINITY_DN2425_c0_g2	477	492	488	-30.50	-20.30	0.665573770491803	11	1-5,492-488;11-21,487-477	6-10,x-x[BULq]	(((((((((((-----(((((&))))).....)))))))))))	ACGGGCUCGUA-----UCUUC&GAAGAUAAAAUACGAGCUUGU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a107_TRINITY_DN2425_c0_g2_488_TPlot.pdf
TRINITY_DN2425_c0_g2:749	si_a471	TRINITY_DN2425_c0_g2	738	758	749	-21.10	-15.30	0.725118483412322	10.5	3-17,756-742	1-2,758-757[UP5];18-21,741-738[UP3]	....(((((((((((((((..&..)))))))))))))))....	GACAGACAAUGGUUACAUGAU&AAUAUGUAAUUAUUGUUAUAU	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2425_c0_g2_749_TPlot.pdf
TRINITY_DN2425_c0_g2:751	si_a469	TRINITY_DN2425_c0_g2	740	760	751	-21.10	-15.30	0.725118483412322	12	5-19,756-742	1-4,760-757[UP5];20-21,741-740[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAGACAAUGGUUACAUGAUCA&AUAAUAUGUAAUUAUUGUUAU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN2425_c0_g2_751_TPlot.pdf
TRINITY_DN2425_c0_g2:777	si_a193	TRINITY_DN2425_c0_g2	766	786	777	-30.90	-20.40	0.660194174757282	11.5	2-15,785-772	1-1,786-786[UP5];16-21,771-766[UP3]	......((((((((((((((.&.))))))))))))))......	GCGCAAGGUGGAUAGGGAGGC&CUUUCCCUGUUCACUAAUAAA	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN2425_c0_g2_777_TPlot.pdf
TRINITY_DN2425_c0_g2:93	si_a870	TRINITY_DN2425_c0_g2	82	102	93	-24.80	-18.50	0.745967741935484	10.5	1-5,102-98;8-19,95-84	6-7,97-96[SIL];20-21,83-82[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	AAUGCAACUGGGUCGGUGAUG&UAUUAAAGAUUUAGUUGCAAU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN2425_c0_g2_93_TPlot.pdf
TRINITY_DN2425_c0_g2:950	si_s522	TRINITY_DN2425_c0_g2	940	959	950	-23.80	-16.30	0.684873949579832	7.5	1-11,959-949;15-21,946-940	12-14,948-947[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	AAAAGUGUG-UCGAGUUGGGA&UCUUAAUUCGAAAUCAUUUUU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN2425_c0_g2_950_TPlot.pdf
TRINITY_DN2425_c0_g3:1899	si_a854	TRINITY_DN2425_c0_g3	1887	1908	1899	-25.00	-17.10	0.684	9	4-13,1905-1896;14-20,1894-1888	1-3,1908-1906[UP5];x-x,1895-1895[BULt];21-21,1887-1887[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	AAAUGGUUGGGGUUUCAAGAUA&UAACUUGAAAUCC-AAUUAUUA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN2425_c0_g3_1899_TPlot.pdf
TRINITY_DN2426_c0_g1:330	si_a500	TRINITY_DN2426_c0_g1	316	339	330	-34.40	-22.70	0.659883720930233	9.5	2-15,338-325;16-21,321-316	1-1,339-339[UP5];x-x,324-322[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	UUCGAGAUAGAGGGCGGAGAGCGC&UCGUUUUUCGUCUUC---CUUGGA	4	0.999999999651607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2426_c0_g1_330_TPlot.pdf
TRINITY_DN2426_c0_g1:689	si_s193	TRINITY_DN2426_c0_g1	674	698	689	-30.40	-20.10	0.661184210526316	5	1-15,698-684;16-19,682-679;20-21,675-674	x-x,683-683[BULt];x-x,678-676[BULt]	((...((((.(((((((((((((((&)))))))))))))))-))))---))	GGCAUUACAGUUCCAAAAUAAUUGU&ACGAUUAUUUUGGAA-UGUA---CC	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN2426_c0_g1_689_TPlot.pdf
TRINITY_DN2426_c0_g1:691	si_s191	TRINITY_DN2426_c0_g1	679	700	691	-26.60	-21.70	0.815789473684211	2.5	1-17,700-684;18-21,682-679	x-x,683-683[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	UACAGUUCCAAAAUAAUUGUUG&UAACGAUUAUUUUGGAA-UGUA	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN2426_c0_g1_691_TPlot.pdf
TRINITY_DN2426_c0_g1:695	si_s187	TRINITY_DN2426_c0_g1	684	706	695	-29.60	-20.00	0.675675675675676	7	1-6,706-701;7-21,698-684	x-x,700-699[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	UUCCAAAAUAAUUGUUGUAUUUG&CGAGUA--ACGAUUAUUUUGGAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s187_TRINITY_DN2426_c0_g1_695_TPlot.pdf
TRINITY_DN24277_c0_g1:1367	si_a497	TRINITY_DN24277_c0_g1	1352	1376	1367	-32.00	-23.70	0.740625	13	3-10,1374-1367;11-21,1362-1352	1-2,1376-1375[UP5];x-x,1366-1363[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	AAGGAAGACGAUGACAAAGCGAUUC&AUGUCGUUUU----UCGUCUUCCUU	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN24277_c0_g1_1367_TPlot.pdf
TRINITY_DN24277_c0_g1:1863	si_s796	TRINITY_DN24277_c0_g1	1852	1872	1863	-30.30	-19.86	0.655445544554455	11.5	2-7,1871-1866;12-20,1861-1853	1-1,1872-1872[UP5];8-11,1865-1862[SIL];21-21,1852-1852[UP3]	.(((((((((....((((((.&.))))))....))))))))).	CAUGAAGAUGCUGGACGAGCA&AGCUCGUAUUUUAUCUUCGUU	2	0.999957624254765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN24277_c0_g1_1863_TPlot.pdf
TRINITY_DN24277_c0_g1:3490	si_s120	TRINITY_DN24277_c0_g1	3479	3500	3490	-27.30	-18.80	0.688644688644689	9	3-3,3498-3498;6-8,3495-3493;9-21,3491-3479	1-2,3500-3499[UP5];4-5,3497-3496[SIL];x-x,3492-3492[BULt]	(((((((((((((.(((..(..&..)..)))-)))))))))))))	UUCAACUCUUCUACUUUGGCAC&UAGAAAAA-UAGAAGAGUUGAA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s120_TRINITY_DN24277_c0_g1_3490_TPlot.pdf
TRINITY_DN24277_c0_g1:4840	si_s246	TRINITY_DN24277_c0_g1	4829	4849	4840	-31.70	-21.70	0.684542586750789	14.5	6-17,4844-4833	1-5,4849-4845[UP5];18-21,4832-4829[UP3]	....((((((((((((.....&.....))))))))))))....	AUCGGUCGGGAAGUGCGCGAU&AAUAGGCAUUUCCCGAUAUAU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN24277_c0_g1_4840_TPlot.pdf
TRINITY_DN24278_c0_g1:37	si_a406	TRINITY_DN24278_c0_g1	26	46	37	-19.80	-13.90	0.702020202020202	3	1-12,46-35;14-20,33-27	13-13,34-34[SIL];21-21,26-26[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AUUAAAUAAAAAUAAAACAAU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999994643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN24278_c0_g1_37_TPlot.pdf
TRINITY_DN24285_c0_g1:691	si_a231	TRINITY_DN24285_c0_g1	680	705	691	-26.90	-18.60	0.691449814126394	14.5	1-9,705-697;10-19,691-682	x-x,696-692[BULt];20-21,681-680[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	CGCGAGUUGAUUUAUCGAUAGGGACA&UGUUUCUAU-----AAUCAAUUCGAU	0	0.0363450463411901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN24285_c0_g1_691_TPlot.pdf
TRINITY_DN24285_c0_g1:697	si_a230	TRINITY_DN24285_c0_g1	681	706	697	-26.90	-19.90	0.739776951672862	13.5	1-10,706-697;11-20,691-682	x-x,696-692[BULt];21-21,681-681[UP3]	.((((((((((.....((((((((((&))))))))))-----)))))))))).	GCGAGUUGAUUUAUCGAUAGGGACAU&AUGUUUCUAU-----AAUCAAUUCGA	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN24285_c0_g1_697_TPlot.pdf
TRINITY_DN24285_c0_g1:698	si_a229	TRINITY_DN24285_c0_g1	682	707	698	-27.60	-22.20	0.804347826086956	12.5	1-11,707-697;12-21,691-682	x-x,696-692[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	CGAGUUGAUUUAUCGAUAGGGACAUG&CAUGUUUCUAU-----AAUCAAUUCG	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN24285_c0_g1_698_TPlot.pdf
TRINITY_DN24285_c0_g1:699	si_a228	TRINITY_DN24285_c0_g1	683	708	699	-27.10	-19.80	0.730627306273063	13.5	2-12,707-697;13-21,691-683	1-1,708-708[UP5];x-x,696-692[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	GAGUUGAUUUAUCGAUAGGGACAUGU&UCAUGUUUCUAU-----AAUCAAUUC	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN24285_c0_g1_699_TPlot.pdf
TRINITY_DN24294_c0_g1:1700	si_s13	TRINITY_DN24294_c0_g1	1686	1709	1700	-22.90	-15.10	0.65938864628821	8.5	1-12,1709-1698;13-17,1695-1691;18-21,1689-1686	x-x,1697-1696[BULt];x-x,1690-1690[BULt]	((((.(((((..((((((((((((&))))))))))))--)))))-))))	CAAUACAAUAUUUAGUAGUGGUAG&UUAUUAUUACUA--UAUUG-AUUG	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN24294_c0_g1_1700_TPlot.pdf
TRINITY_DN24294_c0_g1:1705	si_s772	TRINITY_DN24294_c0_g1	1694	1714	1705	-23.20	-16.90	0.728448275862069	8.5	2-17,1713-1698	1-1,1714-1714[UP5];18-21,1697-1694[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUUUAGUAGUGGUAGUUAAC&AUUAAUUACUAUUGCUAUAAA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN24294_c0_g1_1705_TPlot.pdf
TRINITY_DN24294_c0_g1:1706	si_s771	TRINITY_DN24294_c0_g1	1695	1715	1706	-25.20	-16.90	0.670634920634921	9	3-18,1713-1698	1-2,1715-1714[UP5];19-21,1697-1695[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUUUAGUAGUGGUAGUUAACU&GAUUAAUUACUAUUGCUAUAA	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN24294_c0_g1_1706_TPlot.pdf
TRINITY_DN2429_c0_g1:599	si_a446	TRINITY_DN2429_c0_g1	587	608	599	-25.50	-17.10	0.670588235294118	8	1-10,608-599;13-15,596-594;16-20,592-588	11-12,598-597[SIL];x-x,593-593[BULt];21-21,587-587[UP3]	.(((((.(((..((((((((((&))))))))))..)))-))))).	UUGGCACACAUCUGUCUCAUAU&AUAUGAGAUAAUUGU-UGUUAU	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN2429_c0_g1_599_TPlot.pdf
TRINITY_DN2429_c0_g1:600	si_a445	TRINITY_DN2429_c0_g1	588	609	600	-27.30	-18.30	0.67032967032967	6.5	1-11,609-599;14-16,596-594;17-21,592-588	12-13,598-597[SIL];x-x,593-593[BULt]	(((((.(((..(((((((((((&)))))))))))..)))-)))))	UGGCACACAUCUGUCUCAUAUU&GAUAUGAGAUAAUUGU-UGUUA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN2429_c0_g1_600_TPlot.pdf
TRINITY_DN242_c0_g1:6310	si_s425	TRINITY_DN242_c0_g1	6299	6320	6310	-23.50	-15.30	0.651063829787234	8	4-9,6317-6312;10-21,6310-6299	1-3,6320-6318[UP5];x-x,6311-6311[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	UGUAAUUAUUGUGUAUAUGUAU&UUCUAUAUA-ACAAUAAUUACA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s425_TRINITY_DN242_c0_g1_6310_TPlot.pdf
TRINITY_DN2431_c0_g1:262	si_a408	TRINITY_DN2431_c0_g1	251	271	262	-20.10	-13.20	0.656716417910448	10.5	1-15,271-257	16-21,256-251[UP3]	......(((((((((((((((&)))))))))))))))......	UGACGCAGUGUGAACAAGAUA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2431_c0_g1_262_TPlot.pdf
TRINITY_DN2431_c0_g1:263	si_a407	TRINITY_DN2431_c0_g1	252	272	263	-19.80	-13.30	0.671717171717172	10	2-16,271-257	1-1,272-272[UP5];17-21,256-252[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GACGCAGUGUGAACAAGAUAC&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2431_c0_g1_263_TPlot.pdf
TRINITY_DN2431_c0_g1:265	si_a405	TRINITY_DN2431_c0_g1	254	274	265	-19.80	-13.30	0.671717171717172	11.5	4-18,271-257	1-3,274-272[UP5];19-21,256-254[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGCAGUGUGAACAAGAUACAU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2431_c0_g1_265_TPlot.pdf
TRINITY_DN24327_c0_g1:1556	si_a23	TRINITY_DN24327_c0_g1	1545	1565	1556	-22.80	-15.40	0.675438596491228	7.5	1-17,1565-1549	18-21,1548-1545[UP3]	....(((((((((((((((((&)))))))))))))))))....	UGGAAGAAUUGGAAAUAGAUA&UAUUUAUUUUUAGUUCUAAGA	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN24327_c0_g1_1556_TPlot.pdf
TRINITY_DN24327_c0_g1:524	si_a569	TRINITY_DN24327_c0_g1	512	534	524	-34.20	-23.60	0.690058479532164	12.5	1-6,534-529;9-12,525-522;13-20,520-513	7-8,528-526[AILt];x-x,521-521[BULt];21-21,512-512[UP3]	.((((((((.((((...((((((&))))))-..))))-)))))))).	AGCAGACGUCGCGAGUCCGCGGG&CCCGUG-AAUCGU-AUGUUUGUA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN24327_c0_g1_524_TPlot.pdf
TRINITY_DN24327_c0_g1:666	si_a319	TRINITY_DN24327_c0_g1	656	675	666	-22.40	-15.20	0.678571428571429	7	1-12,675-664;15-21,662-656	13-14,663-663[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	AAUGAGAC-GUUAUGGGUAGA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999989338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN24327_c0_g1_666_TPlot.pdf
TRINITY_DN24327_c0_g1:775	si_s82	TRINITY_DN24327_c0_g1	764	784	775	-28.90	-19.60	0.678200692041523	14	5-19,780-766	1-4,784-781[UP5];20-21,765-764[UP3]	..(((((((((((((((....&....)))))))))))))))..	CUGAGGGAGAGGGGGGAUUAC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN24327_c0_g1_775_TPlot.pdf
TRINITY_DN24327_c0_g1:777	si_s73	TRINITY_DN24327_c0_g1	766	796	777	-24.00	-15.90	0.6625	27.5	1-6,796-791;7-21,780-766	x-x,790-781[BULt]	(((((((((((((((..........((((((&))))))----------)))))))))))))))	GAGGGAGAGGGGGGAUUACCAAUCUGAUAGA&UCUAUU----------UUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN24327_c0_g1_777_TPlot.pdf
TRINITY_DN24327_c0_g1:779	si_s71	TRINITY_DN24327_c0_g1	768	798	779	-25.70	-17.50	0.680933852140078	27	1-8,798-791;9-21,780-768	x-x,790-781[BULt]	(((((((((((((..........((((((((&))))))))----------)))))))))))))	GGGAGAGGGGGGAUUACCAAUCUGAUAGAGG&CUUCUAUU----------UUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN24327_c0_g1_779_TPlot.pdf
TRINITY_DN24327_c0_g1:813	si_s7	TRINITY_DN24327_c0_g1	802	821	813	-21.70	-15.00	0.691244239631336	6.5	1-4,821-818;6-19,817-804	5-5,x-x[BULq];20-21,803-802[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	CCAUGGUAAUAAUGGG-AAUA&UAUUACUUAUUAUUACUAUAU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN24327_c0_g1_813_TPlot.pdf
TRINITY_DN24327_c0_g1:814	si_s6	TRINITY_DN24327_c0_g1	803	822	814	-21.70	-15.00	0.691244239631336	6.5	2-5,821-818;7-20,817-804	1-1,822-822[UP5];6-6,x-x[BULq];21-21,803-803[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	CAUGGUAAUAAUGGG-AAUAG&AUAUUACUUAUUAUUACUAUA	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN24327_c0_g1_814_TPlot.pdf
TRINITY_DN24327_c0_g1:815	si_s5	TRINITY_DN24327_c0_g1	804	823	815	-21.70	-14.80	0.682027649769585	7.5	3-6,821-818;8-21,817-804	1-2,823-822[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	AUGGUAAUAAUGGG-AAUAGA&UAUAUUACUUAUUAUUACUAU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN24327_c0_g1_815_TPlot.pdf
TRINITY_DN24328_c0_g2:85	si_s480	TRINITY_DN24328_c0_g2	75	94	85	-25.00	-16.60	0.664	9	1-11,94-84;14-17,82-79	12-13,83-83[AILq];18-21,78-75[UP3]	....((((.-(((((((((((&)))))))))))..))))....	UGUCAAAUU-AUGUGGGAUCC&GGAUCCUAUAUUUAUUUAAAU	4	0.999356558738347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN24328_c0_g2_85_TPlot.pdf
TRINITY_DN2433_c0_g1:1495	si_s2	TRINITY_DN2433_c0_g1	1484	1504	1495	-20.50	-13.70	0.668292682926829	9	2-16,1503-1489	1-1,1504-1504[UP5];17-21,1488-1484[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAACAAAUAAGUGAUAUGGAC&UUUUAUAUUACUUAUUAUUAC	4	0.999967071746998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN2433_c0_g1_1495_TPlot.pdf
TRINITY_DN2433_c0_g1:1496	si_s1	TRINITY_DN2433_c0_g1	1485	1505	1496	-18.70	-13.70	0.732620320855615	10	3-17,1503-1489	1-2,1505-1504[UP5];18-21,1488-1485[UP3]	....(((((((((((((((..&..)))))))))))))))....	AACAAAUAAGUGAUAUGGACG&UUUUUAUAUUACUUAUUAUUA	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN2433_c0_g1_1496_TPlot.pdf
TRINITY_DN2433_c0_g1:2233	si_a785	TRINITY_DN2433_c0_g1	2222	2245	2233	-25.90	-18.30	0.706563706563707	10	2-8,2244-2238;9-21,2234-2222	1-1,2245-2245[UP5];x-x,2237-2235[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	GAAAAUGGGAAGGAAUUAGAAGAU&CUCUUCUA---UUUUUCUAUUUUC	2	0.999985288146911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2433_c0_g1_2233_TPlot.pdf
TRINITY_DN24344_c0_g1:73	si_s775	TRINITY_DN24344_c0_g1	62	82	73	-25.00	-16.60	0.664	13.5	7-20,76-63	1-6,82-77[UP5];21-21,62-62[UP3]	.((((((((((((((......&......)))))))))))))).	CGUUUUAUGGCGAUAUCUAUC&AAUUACUAUUGCUAUAAAACA	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN24344_c0_g1_73_TPlot.pdf
TRINITY_DN2434_c0_g2:366	si_a141	TRINITY_DN2434_c0_g2	355	375	366	-23.80	-16.80	0.705882352941177	15.5	8-21,368-355	1-7,375-369[UP5]	((((((((((((((.......&.......))))))))))))))	UGGAACGACGACGAAGAUAAU&UAAUUAAUCGUUGUUGUUUUA	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2434_c0_g2_366_TPlot.pdf
TRINITY_DN2434_c0_g2:49	si_a405	TRINITY_DN2434_c0_g2	38	58	49	-19.80	-13.20	0.666666666666667	10.5	2-11,57-48;13-17,46-42	1-1,58-58[UP5];12-12,47-47[SIL];18-21,41-38[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	ACUUGUGUGUGCAAAACAGUA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2434_c0_g2_49_TPlot.pdf
TRINITY_DN2435_c0_g1:305	si_a452	TRINITY_DN2435_c0_g1	294	314	305	-23.00	-15.50	0.673913043478261	7.5	1-8,314-307;10-17,305-298	9-9,306-306[SIL];18-21,297-294[UP3]	....((((((((.((((((((&)))))))).))))))))....	UAAAAUAUGACGUCAAUUAUC&GAUAAUUGUUGUUAUAUAUAA	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN2435_c0_g1_305_TPlot.pdf
TRINITY_DN24361_c0_g1:24	si_s87	TRINITY_DN24361_c0_g1	13	33	24	-32.90	-23.10	0.702127659574468	9	5-21,29-13	1-4,33-30[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGUGAGGAAGAAGAAGUUAA&UUCCUUUCUUCUUCUUCGCUU	2	0.999999368856581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN24361_c0_g1_24_TPlot.pdf
TRINITY_DN2436_c0_g1:5800	si_s93	TRINITY_DN2436_c0_g1	5788	5809	5800	-34.80	-25.20	0.724137931034483	8	1-12,5809-5798;13-16,5796-5793;18-20,5791-5789	x-x,5797-5797[BULt];17-17,5792-5792[SIL];21-21,5788-5788[UP3]	.(((.((((.((((((((((((&))))))))))))-)))).))).	UGUUGGAAGACGAGGAGGAGGA&UCUUCUUCUUCG-CUUCGGAUU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2436_c0_g1_5800_TPlot.pdf
TRINITY_DN2436_c0_g1:5802	si_s91	TRINITY_DN2436_c0_g1	5790	5811	5802	-34.70	-24.00	0.69164265129683	8.5	3-14,5809-5798;15-18,5796-5793;20-21,5791-5790	1-2,5811-5810[UP5];x-x,5797-5797[BULt];19-19,5792-5792[SIL]	((.((((.((((((((((((..&..))))))))))))-)))).))	UUGGAAGACGAGGAGGAGGACG&UUUCUUCUUCUUCG-CUUCGGA	4	0.99999997551886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2436_c0_g1_5802_TPlot.pdf
TRINITY_DN2437_c0_g1:511	si_a758	TRINITY_DN2437_c0_g1	500	520	511	-34.00	-22.20	0.652941176470588	10.5	1-16,520-505	17-21,504-500[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGAAAAAGAGCUCAGGGGGGG&CCUCCUUUGGGUUUUUGAUUG	3	0.999999996064119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2437_c0_g1_511_TPlot.pdf
TRINITY_DN2437_c0_g1:513	si_a756	TRINITY_DN2437_c0_g1	502	522	513	-33.10	-24.30	0.734138972809668	9	2-18,521-505	1-1,522-522[UP5];19-21,504-502[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAAAAGAGCUCAGGGGGGGUG&AACCUCCUUUGGGUUUUUGAU	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2437_c0_g1_513_TPlot.pdf
TRINITY_DN2437_c0_g1:514	si_a755	TRINITY_DN2437_c0_g1	503	523	514	-34.90	-24.30	0.696275071633238	9.5	3-19,521-505	1-2,523-522[UP5];20-21,504-503[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAGAGCUCAGGGGGGGUGG&GAACCUCCUUUGGGUUUUUGA	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN2437_c0_g1_514_TPlot.pdf
TRINITY_DN2437_c0_g1:515	si_a754	TRINITY_DN2437_c0_g1	504	524	515	-34.60	-24.30	0.702312138728324	10.5	4-20,521-505	1-3,524-522[UP5];21-21,504-504[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGAGCUCAGGGGGGGUGGG&UGAACCUCCUUUGGGUUUUUG	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN2437_c0_g1_515_TPlot.pdf
TRINITY_DN2437_c0_g1:516	si_a753	TRINITY_DN2437_c0_g1	505	525	516	-33.10	-23.90	0.722054380664652	11.5	5-21,521-505	1-4,525-522[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGAGCUCAGGGGGGGUGGGU&AUGAACCUCCUUUGGGUUUUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN2437_c0_g1_516_TPlot.pdf
TRINITY_DN2438_c0_g1:1176	si_s191	TRINITY_DN2438_c0_g1	1165	1185	1176	-26.60	-17.70	0.665413533834586	4	2-6,1184-1180;8-21,1178-1165	1-1,1185-1185[UP5];7-7,1179-1179[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UAUAUUUCAAAAUACUCGUUC&UAACGAUUAUUUUGGAAUGUA	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN2438_c0_g1_1176_TPlot.pdf
TRINITY_DN2438_c0_g1:1527	si_a630	TRINITY_DN2438_c0_g1	1516	1537	1527	-25.80	-17.40	0.674418604651163	8.5	1-3,1537-1535;5-13,1532-1524;15-20,1522-1517	4-4,1534-1533[AILt];14-14,1523-1523[SIL];21-21,1516-1516[UP3]	.((((((.(((((((((..(((&)))-.))))))))).)))))).	GCAGGAAUGUCGACGUAUCUAC&GUA-UUAUGUCGAUUUUUUUGA	3	0.999994798484317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN2438_c0_g1_1527_TPlot.pdf
TRINITY_DN2439_c0_g1:2483	si_a68	TRINITY_DN2439_c0_g1	2472	2495	2483	-25.40	-19.40	0.763779527559055	7.5	2-9,2494-2487;10-21,2483-2472	1-1,2495-2495[UP5];x-x,2486-2484[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	UGAAAGACAAUUCCGUGAAAGAAA&CUUCUUUCA---AAUUGUUUUUCA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2439_c0_g1_2483_TPlot.pdf
TRINITY_DN2439_c0_g1:3355	si_a854	TRINITY_DN2439_c0_g1	3344	3364	3355	-25.00	-16.90	0.676	11	4-15,3361-3350	1-3,3364-3362[UP5];16-21,3349-3344[UP3]	......((((((((((((...&...))))))))))))......	CUUUGUUUGGAUUUCAAGGAA&UAACUUGAAAUCCAAUUAUUA	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN2439_c0_g1_3355_TPlot.pdf
TRINITY_DN243_c0_g1:10045	si_a568	TRINITY_DN243_c0_g1	10033	10053	10045	-36.20	-24.70	0.68232044198895	7	1-8,10053-10046;10-13,10045-10042;14-19,10040-10035	9-9,x-x[BULq];x-x,10041-10041[BULt];20-21,10034-10033[UP3]	..((((((.((((-((((((((&)))))))).))))-))))))..	GAAGACAUAGCGA-UCGCGGGG&CCCCGUGAAUCGU-AUGUUUGU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a568_TRINITY_DN243_c0_g1_10045_TPlot.pdf
TRINITY_DN243_c0_g1:4207	si_a867	TRINITY_DN243_c0_g1	4198	4216	4207	-24.10	-15.90	0.659751037344398	6.5	3-11,4214-4206;14-21,4205-4198	1-2,4216-4215[UP5];12-13,x-x[BULq]	((((((((--(((((((((..&..)))))))))..))))))))	GCAACUAG--CUUUAAUAAAU&AAUUAUUAAAGAUUUAGUUGC	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN243_c0_g1_4207_TPlot.pdf
TRINITY_DN243_c0_g1:5703	si_s77	TRINITY_DN243_c0_g1	5692	5712	5703	-25.50	-19.50	0.764705882352941	11	5-14,5708-5699;16-21,5697-5692	1-4,5712-5709[UP5];15-15,5698-5698[SIL]	((((((.((((((((((....&....)))))))))).))))))	GAAGAAUGGAGAGAGAGUAUA&UUUUUUUUCUUUCCUUUCUUC	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN243_c0_g1_5703_TPlot.pdf
TRINITY_DN243_c0_g1:7587	si_s807	TRINITY_DN243_c0_g1	7576	7596	7587	-28.90	-18.80	0.650519031141869	6	1-10,7596-7587;12-15,7586-7583;16-19,7581-7578	11-11,x-x[BULq];x-x,7582-7582[BULt];20-21,7577-7576[UP3]	..((((.((((-((((((((((&)))))))))).))))-))))..	AUAGAAUAAGG-AACGAGGAUA&UAUCUUCGUUACCUU-UUCUUA	4	0.999999999999917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN243_c0_g1_7587_TPlot.pdf
TRINITY_DN243_c0_g1:7653	si_s633	TRINITY_DN243_c0_g1	7638	7662	7653	-37.90	-29.70	0.783641160949868	8.5	1-15,7662-7648;16-21,7643-7638	x-x,7647-7644[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	AGGGCACGACGACGCUUAUGGAGAG&CUUUUCGUAGGCGUU----UGCCCU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN243_c0_g1_7653_TPlot.pdf
TRINITY_DN243_c0_g1:7654	si_s632	TRINITY_DN243_c0_g1	7639	7663	7654	-38.20	-29.80	0.780104712041885	8.5	1-16,7663-7648;17-21,7643-7639	x-x,7647-7644[BULt]	(((((....((((((((((((((((&))))))))))))))))----)))))	GGGCACGACGACGCUUAUGGAGAGA&UCUUUUCGUAGGCGUU----UGCCC	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN243_c0_g1_7654_TPlot.pdf
TRINITY_DN243_c0_g1:7655	si_s631	TRINITY_DN243_c0_g1	7640	7664	7655	-36.00	-26.50	0.736111111111111	9.5	2-17,7663-7648;18-21,7643-7640	1-1,7664-7664[UP5];x-x,7647-7644[BULt]	((((....((((((((((((((((.&.))))))))))))))))----))))	GGCACGACGACGCUUAUGGAGAGAC&AUCUUUUCGUAGGCGUU----UGCC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN243_c0_g1_7655_TPlot.pdf
TRINITY_DN243_c0_g1:7748	si_a499	TRINITY_DN243_c0_g1	7735	7758	7748	-35.20	-23.10	0.65625	7.5	1-9,7758-7750;10-11,7748-7747;12-18,7745-7739;19-21,7737-7735	x-x,7749-7749[BULt];x-x,7746-7746[BULt];x-x,7738-7738[BULt]	(((.(((((((.((.(((((((((&)))))))))-))-)))))))-)))	CCAUAGGAAGGCCGAAAAAGCGAU&GUCGUUUUU-CG-UCUUCCU-UGG	4	0.999999999999049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN243_c0_g1_7748_TPlot.pdf
TRINITY_DN243_c0_g1:8083	si_s69	TRINITY_DN243_c0_g1	8072	8093	8083	-23.40	-15.30	0.653846153846154	10	3-7,8091-8087;9-20,8084-8073	1-2,8093-8092[UP5];8-8,8086-8085[AILt];21-21,8072-8072[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	AGAAGAAGAAGAAGAAGAAGAA&AACUUCU-AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN243_c0_g1_8083_TPlot.pdf
TRINITY_DN243_c0_g1:8085	si_s82	TRINITY_DN243_c0_g1	8074	8094	8085	-28.90	-18.80	0.650519031141869	7	2-7,8093-8088;10-21,8085-8074	1-1,8094-8094[UP5];8-9,8087-8086[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	AAGAAGAAGAAGAAGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN243_c0_g1_8085_TPlot.pdf
TRINITY_DN243_c0_g1:8250	si_a679	TRINITY_DN243_c0_g1	8239	8259	8250	-35.40	-23.98	0.677401129943503	10.5	1-4,8259-8256;8-12,8252-8248;14-20,8246-8240	5-7,8255-8253[SIL];13-13,8247-8247[SIL];21-21,8239-8239[UP3]	.(((((((.(((((...((((&))))...))))).))))))).	AUCGAAAUGGCGUGUGGGGGG&CCUUAUUCACGCGGUUUCGAA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a679_TRINITY_DN243_c0_g1_8250_TPlot.pdf
TRINITY_DN243_c0_g1:8251	si_a678	TRINITY_DN243_c0_g1	8240	8261	8251	-36.30	-24.52	0.675482093663912	11.5	1-5,8261-8257;9-13,8252-8248;15-21,8246-8240	6-8,8256-8253[AILt];14-14,8247-8247[SIL]	(((((((.(((((....(((((&)))))-...))))).)))))))	UCGAAAUGGCGUGUGGGGGGGA&UCCUU-AUUCACGCGGUUUCGA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN243_c0_g1_8251_TPlot.pdf
TRINITY_DN243_c0_g1:8252	si_a677	TRINITY_DN243_c0_g1	8241	8261	8252	-35.40	-23.48	0.663276836158192	10.5	1-6,8261-8256;10-14,8252-8248;16-21,8246-8241	7-9,8255-8253[SIL];15-15,8247-8247[SIL]	((((((.(((((...((((((&))))))...))))).))))))	CGAAAUGGCGUGUGGGGGGGA&UUCCUUAUUCACGCGGUUUCG	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN243_c0_g1_8252_TPlot.pdf
TRINITY_DN243_c0_g1:9646	si_s22	TRINITY_DN243_c0_g1	9635	9655	9646	-26.70	-17.70	0.662921348314607	10	1-14,9655-9642	15-21,9641-9635[UP3]	.......((((((((((((((&)))))))))))))).......	CAUAUGAUGCGAUCGAUAUGG&CUAUAUUGAUUGCAACUAAAU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN243_c0_g1_9646_TPlot.pdf
TRINITY_DN243_c0_g1:9738	si_a366	TRINITY_DN243_c0_g1	9727	9747	9738	-28.80	-20.30	0.704861111111111	6.5	1-5,9747-9743;7-19,9741-9729	6-6,9742-9742[SIL];20-21,9728-9727[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AGCGUUUUUGGUCCGUUUAAA&UUUGAUCGGAUCAAAAAUGAU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a366_TRINITY_DN243_c0_g1_9738_TPlot.pdf
TRINITY_DN243_c0_g1:9739	si_a365	TRINITY_DN243_c0_g1	9728	9748	9739	-28.60	-21.00	0.734265734265734	5.5	1-6,9748-9743;8-20,9741-9729	7-7,9742-9742[SIL];21-21,9728-9728[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	GCGUUUUUGGUCCGUUUAAAA&UUUUGAUCGGAUCAAAAAUGA	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a365_TRINITY_DN243_c0_g1_9739_TPlot.pdf
TRINITY_DN243_c0_g1:9740	si_a364	TRINITY_DN243_c0_g1	9729	9749	9740	-27.70	-20.80	0.750902527075812	5	2-7,9748-9743;9-21,9741-9729	1-1,9749-9749[UP5];8-8,9742-9742[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	CGUUUUUGGUCCGUUUAAAAC&AUUUUGAUCGGAUCAAAAAUG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN243_c0_g1_9740_TPlot.pdf
TRINITY_DN243_c0_g1:9741	si_a363	TRINITY_DN243_c0_g1	9730	9750	9741	-26.40	-18.40	0.696969696969697	7	3-8,9748-9743;10-21,9741-9730	1-2,9750-9749[UP5];9-9,9742-9742[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GUUUUUGGUCCGUUUAAAACU&UAUUUUGAUCGGAUCAAAAAU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN243_c0_g1_9741_TPlot.pdf
TRINITY_DN24400_c0_g1:1615	si_s86	TRINITY_DN24400_c0_g1	1603	1629	1615	-32.90	-21.70	0.659574468085106	16.5	1-8,1629-1622;9-18,1616-1607;19-20,1605-1604	x-x,1621-1617[BULt];x-x,1606-1606[BULt];21-21,1603-1603[UP3]	.((.((((((((((.....((((((((&))))))))-----))))))))))-)).	UGCAGGAGAAGGAGGCUGAGAGGGAGA&UUUCCUUU-----CUUCUUCUUC-GCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN24400_c0_g1_1615_TPlot.pdf
TRINITY_DN24400_c0_g1:1622	si_s78	TRINITY_DN24400_c0_g1	1609	1631	1622	-26.20	-19.50	0.744274809160305	9.5	1-12,1631-1620;13-21,1617-1609	x-x,1619-1618[BULt]	(((((((((..((((((((((((&))))))))))))--)))))))))	AGAAGGAGGCUGAGAGGGAGAAG&UUUUUUUCUUUC--CUUUCUUCU	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN24400_c0_g1_1622_TPlot.pdf
TRINITY_DN24400_c0_g1:1625	si_s88	TRINITY_DN24400_c0_g1	1614	1635	1625	-34.80	-23.60	0.67816091954023	8	2-3,1634-1633;4-15,1631-1620;17-21,1618-1614	1-1,1635-1635[UP5];x-x,1632-1632[BULt];16-16,1619-1619[SIL]	(((((.((((((((((((.((.&.))-)))))))))))).)))))	GAGGCUGAGAGGGAGAAGUGGC&UCC-UUUCUUCUUCUUCGCUUC	4	0.999999999998533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN24400_c0_g1_1625_TPlot.pdf
TRINITY_DN24400_c0_g1:1710	si_a759	TRINITY_DN24400_c0_g1	1700	1718	1710	-32.60	-21.30	0.653374233128834	8	1-9,1718-1710;12-20,1709-1701	10-11,x-x[BULq];21-21,1700-1700[UP3]	.(((((((((--(((((((((&)))))))))..))))))))).	GCAGUCAGAA--UCAGAGGAG&CUCCUUUGGGUUUUUGAUUGA	3	0.999999988256462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN24400_c0_g1_1710_TPlot.pdf
TRINITY_DN24400_c0_g1:227	si_s329	TRINITY_DN24400_c0_g1	216	240	227	-31.20	-20.36	0.652564102564103	15.5	1-6,240-235;9-14,228-223;16-21,221-216	7-8,234-229[AILt];15-15,222-222[SIL]	((((((.((((((......((((((&))))))----..)))))).))))))	CGUGGAGCGUAUGGGGAGGUGUGGC&GUUACA----AACAUACGAUUCACG	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s329_TRINITY_DN24400_c0_g1_227_TPlot.pdf
TRINITY_DN2440_c0_g1:992	si_s107	TRINITY_DN2440_c0_g1	982	1001	992	-28.50	-19.70	0.691228070175439	6	3-11,999-991;14-21,989-982	1-2,1001-1000[UP5];12-13,990-990[AILq]	((((((((.-(((((((((..&..)))))))))..))))))))	UUUUUCUAA-UUCCAAUCCAU&UCGGAUUGGAAAAUAGAAAAA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s107_TRINITY_DN2440_c0_g1_992_TPlot.pdf
TRINITY_DN2440_c0_g1:993	si_s106	TRINITY_DN2440_c0_g1	983	1002	993	-28.60	-18.80	0.657342657342657	7	4-12,999-991;15-21,989-983	1-3,1002-1000[UP5];13-14,990-990[AILq]	(((((((.-(((((((((...&...)))))))))..)))))))	UUUUCUAA-UUCCAAUCCAUG&UUCGGAUUGGAAAAUAGAAAA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s106_TRINITY_DN2440_c0_g1_993_TPlot.pdf
TRINITY_DN24416_c0_g1:232	si_s602	TRINITY_DN24416_c0_g1	221	242	232	-28.10	-18.50	0.658362989323843	10.5	1-4,242-239;6-7,236-235;9-18,233-224	5-5,238-237[AILt];8-8,234-234[SIL];19-21,223-221[UP3]	...((((((((((.((..((((&))))-.)).))))))))))...	UCAGGAAGAGAUUGGCGGUGGA&UCCA-AGCGAAUCUUUUUUAAA	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN24416_c0_g1_232_TPlot.pdf
TRINITY_DN24416_c0_g3:1034	si_a897	TRINITY_DN24416_c0_g3	1023	1043	1034	-21.20	-15.00	0.707547169811321	6.5	1-7,1043-1037;10-19,1034-1025	8-9,1036-1035[SIL];20-21,1024-1023[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	ACUAUAUUGCUUUAUAUUACU&AGUAAUAAUAAGUAAUAUAAA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN24416_c0_g3_1034_TPlot.pdf
TRINITY_DN2442_c0_g1:2286	si_a787	TRINITY_DN2442_c0_g1	2275	2296	2286	-26.30	-17.20	0.653992395437262	11.5	1-9,2296-2288;10-15,2286-2281;17-20,2279-2276	x-x,2287-2287[BULt];16-16,2280-2280[SIL];21-21,2275-2275[UP3]	.((((.((((((.(((((((((&)))))))))-)))))).)))).	GGGGGCGUAGAGUGGGUGGAGG&CUUCUAUUU-UUCUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2442_c0_g1_2286_TPlot.pdf
TRINITY_DN2442_c0_g1:2364	si_s481	TRINITY_DN2442_c0_g1	2353	2372	2364	-23.00	-15.90	0.691304347826087	8.5	1-6,2372-2367;8-18,2366-2356	7-7,x-x[BULq];19-21,2355-2353[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	CGGUUGAAUGAAUA-GGGGUC&GAUCCUAUAUUUAUUUAAAUA	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN2442_c0_g1_2364_TPlot.pdf
TRINITY_DN2442_c0_g1:2367	si_s478	TRINITY_DN2442_c0_g1	2356	2375	2367	-27.20	-17.90	0.658088235294118	7	1-2,2375-2374;4-9,2372-2367;11-21,2366-2356	3-3,2373-2373[SIL];10-10,x-x[BULq]	(((((((((((-((((((.((&)).)))))).)))))))))))	UUGAAUGAAUA-GGGGUCGGU&ACGGAUCCUAUAUUUAUUUAA	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN2442_c0_g1_2367_TPlot.pdf
TRINITY_DN2442_c0_g1:284	si_s425	TRINITY_DN2442_c0_g1	271	293	284	-23.50	-15.30	0.651063829787234	7	1-3,293-291;5-16,289-278;17-21,275-271	4-4,290-290[SIL];x-x,277-276[BULt]	(((((..((((((((((((.(((&))).))))))))))))--)))))	UGUGACUUUGUUGUUGUGUUGAA&UUCUAUAUAACAAUAA--UUACA	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s425_TRINITY_DN2442_c0_g1_284_TPlot.pdf
TRINITY_DN2443_c0_g1:2480	si_a21	TRINITY_DN2443_c0_g1	2467	2489	2480	-24.30	-20.00	0.823045267489712	8	1-12,2489-2478;13-20,2475-2468	x-x,2477-2476[BULt];21-21,2467-2467[UP3]	.((((((((..((((((((((((&))))))))))))--)))))))).	CUAGGACUGAAGAAAUGAAUAGG&CCUAUUUAUUUU--UAGUUCUAA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN2443_c0_g1_2480_TPlot.pdf
TRINITY_DN2443_c0_g1:4938	si_s439	TRINITY_DN2443_c0_g1	4927	4947	4938	-21.50	-14.70	0.683720930232558	5.5	1-9,4947-4939;11-18,4937-4930	10-10,4938-4938[SIL];19-21,4929-4927[UP3]	...((((((((.(((((((((&))))))))).))))))))...	CAAUAUGUAUAUUAUGUAAUU&AAUUACAUAUUAUAUAUAACA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN2443_c0_g1_4938_TPlot.pdf
TRINITY_DN2443_c0_g1:4939	si_s438	TRINITY_DN2443_c0_g1	4928	4948	4939	-21.20	-15.80	0.745283018867925	4.5	1-10,4948-4939;12-19,4937-4930	11-11,4938-4938[SIL];20-21,4929-4928[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AAUAUGUAUAUUAUGUAAUUA&UAAUUACAUAUUAUAUAUAAC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN2443_c0_g1_4939_TPlot.pdf
TRINITY_DN2443_c0_g1:4940	si_s437	TRINITY_DN2443_c0_g1	4929	4949	4940	-19.70	-17.10	0.868020304568528	3.5	1-11,4949-4939;13-20,4937-4930	12-12,4938-4938[SIL];21-21,4929-4929[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	AUAUGUAUAUUAUGUAAUUAU&AUAAUUACAUAUUAUAUAUAA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2443_c0_g1_4940_TPlot.pdf
TRINITY_DN2443_c0_g1:4942	si_s435	TRINITY_DN2443_c0_g1	4931	4951	4942	-20.90	-15.70	0.751196172248804	4.5	3-13,4949-4939;15-21,4937-4931	1-2,4951-4950[UP5];14-14,4938-4938[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AUGUAUAUUAUGUAAUUAUAU&CAAUAAUUACAUAUUAUAUAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN2443_c0_g1_4942_TPlot.pdf
TRINITY_DN24461_c1_g2:83	si_a647	TRINITY_DN24461_c1_g2	72	92	83	-29.50	-19.60	0.664406779661017	8	1-11,92-82;13-15,80-78;17-18,76-75	12-12,81-81[SIL];16-16,77-77[SIL];19-21,74-72[UP3]	...((.(((.(((((((((((&))))))))))).))).))...	AACUCGCGACAUGUUGCUCAA&UUGAGUAAUAUAUCGGGAAAU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN24461_c1_g2_83_TPlot.pdf
TRINITY_DN24461_c1_g2:89	si_a641	TRINITY_DN24461_c1_g2	78	98	89	-23.60	-17.00	0.720338983050847	10.5	5-17,94-82;19-21,80-78	1-4,98-95[UP5];18-18,81-81[SIL]	(((.(((((((((((((....&....))))))))))))).)))	CGACAUGUUGCUCAAAGCUCU&AUUUUUUUGAGUAAUAUAUCG	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN24461_c1_g2_89_TPlot.pdf
TRINITY_DN24473_c0_g1:157	si_a657	TRINITY_DN24473_c0_g1	137	166	157	-33.80	-23.60	0.698224852071006	12	1-13,166-154;14-21,144-137	x-x,153-145[BULt]	((((((((.........(((((((((((((&)))))))))))))---------))))))))	GUCAAUGGUUAGACAACGUAUUUCCCGGUA&UAUCGGGAAAUGC---------CUAUUGAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN24473_c0_g1_157_TPlot.pdf
TRINITY_DN2448_c0_g1:5671	si_a689	TRINITY_DN2448_c0_g1	5654	5682	5671	-38.00	-26.00	0.684210526315789	19	1-5,5682-5678;6-12,5675-5669;13-21,5662-5654	x-x,5677-5676[BULt];x-x,5668-5663[BULt]	(((((((((......(((((((..(((((&)))))--)))))))------)))))))))	GCCGGUUGUCUUUUUGUUCGAAGAGCUGC&GCGGU--UUCGAAC------ACAACUGGU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a689_TRINITY_DN2448_c0_g1_5671_TPlot.pdf
TRINITY_DN2448_c0_g1:5848	si_a239	TRINITY_DN2448_c0_g1	5837	5857	5848	-35.40	-23.40	0.661016949152542	10	3-6,5855-5852;8-10,5850-5848;13-21,5845-5837	1-2,5857-5856[UP5];7-7,5851-5851[SIL];11-12,5847-5846[SIL]	(((((((((..(((.((((..&..)))).)))..)))))))))	AUCGGGGGACAGGAAUGAUCU&UAAUCAAUUCGAUCCCCCGAU	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a239_TRINITY_DN2448_c0_g1_5848_TPlot.pdf
TRINITY_DN2448_c0_g1:7761	si_s96	TRINITY_DN2448_c0_g1	7749	7772	7761	-37.20	-26.60	0.71505376344086	7.5	2-8,7771-7765;9-13,7762-7758;14-21,7756-7749	1-1,7772-7772[UP5];x-x,7764-7763[BULt];x-x,7757-7757[BULt]	((((((((.(((((..(((((((.&.)))))))--)))))-))))))))	UCCGAUCCAGAAGCAUGGAGAAGC&UCUUCUUC--GCUUC-GGAUUGGA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN2448_c0_g1_7761_TPlot.pdf
TRINITY_DN2448_c0_g1:7816	si_a331	TRINITY_DN2448_c0_g1	7804	7825	7816	-30.60	-20.00	0.65359477124183	7	1-10,7825-7816;11-17,7814-7808;19-21,7806-7804	x-x,7815-7815[BULt];18-18,7807-7807[SIL]	(((.(((((((.((((((((((&))))))))))-))))))).)))	UUCCGGGCAAGCGAAUGGAAGG&UUUUUUAUUC-CUUGUCCCGAA	4	0.999999818689352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2448_c0_g1_7816_TPlot.pdf
TRINITY_DN2449_c0_g1:315	si_a70	TRINITY_DN2449_c0_g1	304	324	315	-23.90	-16.70	0.698744769874477	7.5	1-8,324-317;11-19,314-306	9-10,316-315[SIL];20-21,305-304[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	CCUGGAAAAUAUCUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999997222946794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2449_c0_g1_315_TPlot.pdf
TRINITY_DN2449_c0_g1:316	si_a69	TRINITY_DN2449_c0_g1	305	325	316	-24.00	-17.60	0.733333333333333	6	1-9,325-317;12-20,314-306	10-11,316-315[SIL];21-21,305-305[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	CUGGAAAAUAUCUUGAAAGAA&UUCUUUCAAAUUGUUUUUCAU	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2449_c0_g1_316_TPlot.pdf
TRINITY_DN2449_c0_g1:317	si_a68	TRINITY_DN2449_c0_g1	306	326	317	-25.40	-17.70	0.696850393700787	6	2-10,325-317;13-21,314-306	1-1,326-326[UP5];11-12,316-315[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	UGGAAAAUAUCUUGAAAGAAA&CUUCUUUCAAAUUGUUUUUCA	2	0.999708299024427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2449_c0_g1_317_TPlot.pdf
TRINITY_DN2449_c0_g1:884	si_a494	TRINITY_DN2449_c0_g1	872	893	884	-29.50	-19.40	0.657627118644068	10.5	5-14,889-880;15-21,878-872	1-4,893-890[UP5];x-x,879-879[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GAAGAUGAAAGAAUGACAGCUU&AAUAUGUCGUUUUU-CGUCUUC	3	0.999999999999599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2449_c0_g1_884_TPlot.pdf
TRINITY_DN244_c0_g1:1227	si_a405	TRINITY_DN244_c0_g1	1216	1236	1227	-19.80	-16.30	0.823232323232323	9.5	3-20,1234-1217	1-2,1236-1235[UP5];21-21,1216-1216[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUAGAUAUAGAUAGAGCAGCU&AAUUGUUUUGUUUAUAUUUAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN244_c0_g1_1227_TPlot.pdf
TRINITY_DN244_c0_g1:1228	si_a404	TRINITY_DN244_c0_g1	1217	1237	1228	-21.70	-17.90	0.824884792626728	7	1-2,1237-1236;4-21,1234-1217	3-3,1235-1235[SIL]	((((((((((((((((((.((&)).))))))))))))))))))	UAGAUAUAGAUAGAGCAGCUC&GAAUUGUUUUGUUUAUAUUUA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN244_c0_g1_1228_TPlot.pdf
TRINITY_DN244_c0_g1:1230	si_a402	TRINITY_DN244_c0_g1	1219	1239	1230	-22.40	-16.00	0.714285714285714	9.5	3-4,1237-1236;6-21,1234-1219	1-2,1239-1238[UP5];5-5,1235-1235[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	GAUAUAGAUAGAGCAGCUCAC&UAGAAUUGUUUUGUUUAUAUU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN244_c0_g1_1230_TPlot.pdf
TRINITY_DN244_c0_g1:2077	si_s376	TRINITY_DN244_c0_g1	2066	2086	2077	-42.50	-28.10	0.661176470588235	8	2-4,2085-2083;6-20,2081-2067	1-1,2086-2086[UP5];5-5,2082-2082[SIL];21-21,2066-2066[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	AGAGGUGGAUAUGUGAACGAA&AUCGCUCGCGUGUCCGCCUUA	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN244_c0_g1_2077_TPlot.pdf
TRINITY_DN244_c0_g1:2469	si_a704	TRINITY_DN244_c0_g1	2458	2477	2469	-29.30	-19.80	0.675767918088737	8	1-6,2477-2472;8-16,2471-2463	7-7,x-x[BULq];17-21,2462-2458[UP3]	.....(((((((((-((((((&)))))).))))))))).....	CAAUAUUUGGAAUG-GCCAGU&ACUGGUACAUUCCAAAAUAAU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN244_c0_g1_2469_TPlot.pdf
TRINITY_DN244_c0_g1:2470	si_a703	TRINITY_DN244_c0_g1	2459	2478	2470	-29.20	-21.00	0.719178082191781	7	1-7,2478-2472;9-17,2471-2463	8-8,x-x[BULq];18-21,2462-2459[UP3]	....(((((((((-(((((((&))))))).)))))))))....	AAUAUUUGGAAUG-GCCAGUU&AACUGGUACAUUCCAAAAUAA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN244_c0_g1_2470_TPlot.pdf
TRINITY_DN244_c0_g1:2552	si_a543	TRINITY_DN244_c0_g1	2542	2560	2552	-28.70	-19.30	0.672473867595819	4.5	1-9,2560-2552;11-13,2551-2549;15-21,2548-2542	10-10,x-x[BULq];14-14,x-x[BULq]	(((((((-(((-(((((((((&))))))))).))).)))))))	AAAGAAG-AGA-UGAACCGGU&AUCGGUUCAAUCUAUUUCUUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN244_c0_g1_2552_TPlot.pdf
TRINITY_DN244_c0_g1:2561	si_a33	TRINITY_DN244_c0_g1	2550	2570	2561	-37.80	-24.70	0.653439153439153	6.5	1-16,2570-2555;19-21,2552-2550	17-18,2554-2553[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	GAUGAACCGGUUUUGGGAUUA&UAGUUCUAAGACCGGUAGGUC	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a33_TRINITY_DN244_c0_g1_2561_TPlot.pdf
TRINITY_DN244_c0_g1:2566	si_a28	TRINITY_DN244_c0_g1	2555	2575	2566	-30.70	-21.80	0.710097719869707	12.5	6-21,2570-2555	1-5,2575-2571[UP5]	((((((((((((((((.....&.....))))))))))))))))	ACCGGUUUUGGGAUUAUAUAU&AUUUUUAGUUCUAAGACCGGU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN244_c0_g1_2566_TPlot.pdf
TRINITY_DN244_c0_g1:2567	si_a27	TRINITY_DN244_c0_g1	2556	2576	2567	-30.30	-20.50	0.676567656765677	14	7-21,2570-2556	1-6,2576-2571[UP5]	(((((((((((((((......&......)))))))))))))))	CCGGUUUUGGGAUUAUAUAUU&UAUUUUUAGUUCUAAGACCGG	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN244_c0_g1_2567_TPlot.pdf
TRINITY_DN244_c0_g1:2580	si_a415	TRINITY_DN244_c0_g1	2570	2589	2580	-18.10	-12.10	0.668508287292818	6.5	1-11,2589-2579;13-20,2578-2571	12-12,x-x[BULq];21-21,2570-2570[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	AUAUAUUUG-UUGAAUAUGGA&UUUAUAUUUAAAUAAAUAUAG	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN244_c0_g1_2580_TPlot.pdf
TRINITY_DN244_c0_g1:2581	si_a414	TRINITY_DN244_c0_g1	2571	2590	2581	-18.10	-11.90	0.657458563535912	5.5	2-12,2589-2579;14-21,2578-2571	1-1,2590-2590[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	UAUAUUUG-UUGAAUAUGGAG&GUUUAUAUUUAAAUAAAUAUA	3	0.999999654833138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN244_c0_g1_2581_TPlot.pdf
TRINITY_DN24505_c0_g1:108	si_a631	TRINITY_DN24505_c0_g1	97	117	108	-25.70	-18.20	0.708171206225681	12.5	6-21,112-97	1-5,117-113[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUCAGAGAAAUCGGCGGUUUU&UAUUAUGUCGAUUUUUUUGAG	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN24505_c0_g1_108_TPlot.pdf
TRINITY_DN2450_c0_g4:960	si_s188	TRINITY_DN2450_c0_g4	949	969	960	-28.20	-20.50	0.726950354609929	6	3-20,967-950	1-2,969-968[UP5];21-21,949-949[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UUUCCAAAAUAAUUGUUAUGU&GAGUAACGAUUAUUUUGGAAU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN2450_c0_g4_960_TPlot.pdf
TRINITY_DN24526_c0_g1:1608	si_a412	TRINITY_DN24526_c0_g1	1597	1617	1608	-18.30	-12.70	0.693989071038251	6	3-15,1615-1603;17-20,1601-1598	1-2,1617-1616[UP5];16-16,1602-1602[SIL];21-21,1597-1597[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AAUUUUUUUAAGUAUAAACUU&UUGUUUAUAUUUAAAUAAAUA	2	0.993029117054739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN24526_c0_g1_1608_TPlot.pdf
TRINITY_DN24526_c0_g1:1613	si_a407	TRINITY_DN24526_c0_g1	1602	1623	1613	-19.80	-13.50	0.681818181818182	9.5	1-5,1623-1619;8-20,1615-1603	6-7,1618-1616[AILt];21-21,1602-1602[UP3]	.(((((((((((((...(((((&)))))-..))))))))))))).	UUUUAAGUAUAAACUUUGACGA&UUGUU-UUGUUUAUAUUUAAAU	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN24526_c0_g1_1613_TPlot.pdf
TRINITY_DN24526_c0_g1:1615	si_a405	TRINITY_DN24526_c0_g1	1604	1625	1615	-19.80	-13.70	0.691919191919192	9.5	2-7,1624-1619;10-21,1615-1604	1-1,1625-1625[UP5];8-9,1618-1616[AILt]	((((((((((((...((((((.&.))))))-..))))))))))))	UUAAGUAUAAACUUUGACGAUC&AAUUGUU-UUGUUUAUAUUUAA	2	0.999999998852787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN24526_c0_g1_1615_TPlot.pdf
TRINITY_DN24526_c0_g1:720	si_a785	TRINITY_DN24526_c0_g1	709	729	720	-25.90	-17.30	0.667953667953668	8.5	2-15,728-715	1-1,729-729[UP5];16-21,714-709[UP3]	......((((((((((((((.&.))))))))))))))......	GUAAAAGGAAAAGUAGAAGAA&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN24526_c0_g1_720_TPlot.pdf
TRINITY_DN2453_c0_g1:699	si_s73	TRINITY_DN2453_c0_g1	688	708	699	-24.00	-15.90	0.6625	12	5-18,704-691	1-4,708-705[UP5];19-21,690-688[UP3]	...((((((((((((((....&....))))))))))))))...	ACUGGAAAGAAGAAGAAGUAA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2453_c0_g1_699_TPlot.pdf
TRINITY_DN2453_c0_g1:740	si_s78	TRINITY_DN2453_c0_g1	727	749	740	-26.20	-17.50	0.66793893129771	11.5	5-15,745-735;16-20,732-728	1-4,749-746[UP5];x-x,734-733[BULt];21-21,727-727[UP3]	.(((((..(((((((((((....&....)))))))))))--))))).	CGGAGAUUAAGGAAAGAAGCAUU&UUUUUUUCUUUCCUU--UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2453_c0_g1_740_TPlot.pdf
TRINITY_DN2453_c0_g1:741	si_s77	TRINITY_DN2453_c0_g1	728	750	741	-25.50	-17.20	0.674509803921569	12.5	6-16,745-735;17-21,732-728	1-5,750-746[UP5];x-x,734-733[BULt]	(((((..(((((((((((.....&.....)))))))))))--)))))	GGAGAUUAAGGAAAGAAGCAUUA&UUUUUUUUCUUUCCUU--UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2453_c0_g1_741_TPlot.pdf
TRINITY_DN24540_c0_g1:640	si_a400	TRINITY_DN24540_c0_g1	630	649	640	-22.80	-16.70	0.732456140350877	5	1-13,649-637;15-19,636-632	14-14,x-x[BULq];20-21,631-630[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	ACUAAAC-AGGCAAUUCUAUA&UAUAGAAUUGUUUUGUUUAUA	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN24540_c0_g1_640_TPlot.pdf
TRINITY_DN24549_c0_g1:24	si_a718	TRINITY_DN24549_c0_g1	13	33	24	-32.60	-21.60	0.662576687116564	14	7-17,27-17;19-19,15-15	1-6,33-28[UP5];18-18,16-16[SIL];20-21,14-13[UP3]	..(.(((((((((((......&......))))))))))).)..	AAGGCCGAGUAACGAAUUAAA&AAAUAAUCGUUACUCGGGCAU	0	0.089768068285236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN24549_c0_g1_24_TPlot.pdf
TRINITY_DN24549_c0_g1:25	si_a717	TRINITY_DN24549_c0_g1	14	34	25	-32.40	-21.60	0.666666666666667	15	8-18,27-17;20-20,15-15	1-7,34-28[UP5];19-19,16-16[SIL];21-21,14-14[UP3]	.(.(((((((((((.......&.......))))))))))).).	AGGCCGAGUAACGAAUUAAAU&AAAAUAAUCGUUACUCGGGCA	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN24549_c0_g1_25_TPlot.pdf
TRINITY_DN2455_c0_g1:2919	si_a783	TRINITY_DN2455_c0_g1	2908	2928	2919	-24.70	-18.20	0.736842105263158	11.5	3-16,2926-2913	1-2,2928-2927[UP5];17-21,2912-2908[UP3]	.....((((((((((((((..&..)))))))))))))).....	GCGGCGAGAGGUGGAAGAGCA&AACUCUUCUAUUUUUCUAUUU	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2455_c0_g1_2919_TPlot.pdf
TRINITY_DN2455_c0_g1:3051	si_a73	TRINITY_DN2455_c0_g1	3040	3060	3051	-21.90	-14.70	0.671232876712329	10.5	1-4,3060-3057;7-18,3054-3043	5-6,3056-3055[SIL];19-21,3042-3040[UP3]	...((((((((((((..((((&))))..))))))))))))...	CGGAGUGGAAGGCAAGCUGAG&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999959288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2455_c0_g1_3051_TPlot.pdf
TRINITY_DN2455_c0_g1:3137	si_s90	TRINITY_DN2455_c0_g1	3126	3146	3137	-35.30	-24.60	0.696883852691218	6.5	1-14,3146-3133;16-16,3131-3131;19-21,3128-3126	15-15,3132-3132[SIL];17-18,3130-3129[SIL]	(((..(.((((((((((((((&)))))))))))))).)..)))	CCGUUGAGGGGAAGAAGAGGG&CUUUCUUCUUCUUCGCUUCGG	4	0.999999836469413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2455_c0_g1_3137_TPlot.pdf
TRINITY_DN2455_c0_g1:3232	si_a30	TRINITY_DN2455_c0_g1	3216	3241	3232	-32.70	-21.76	0.665443425076453	16	1-10,3241-3232;13-15,3225-3223;16-21,3221-3216	11-12,3231-3226[AILt];x-x,3222-3222[BULt]	((((((.(((......((((((((((&))))))))))----..)))-))))))	CUACCGAGUCGGCGAAAGAGCUGGAA&UUUUAGUUCU----AAGAC-CGGUAG	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a30_TRINITY_DN2455_c0_g1_3232_TPlot.pdf
TRINITY_DN2455_c0_g1:3297	si_a555	TRINITY_DN2455_c0_g1	3285	3306	3297	-33.70	-22.90	0.679525222551929	10.5	3-9,3304-3298;11-16,3296-3291;17-21,3289-3285	1-2,3306-3305[UP5];10-10,3297-3297[SIL];x-x,3290-3290[BULt]	(((((.((((((.(((((((..&..))))))).))))))-)))))	UCGCGCGGGAGGAGAGGAAGGA&UAUUUCUUUAUCUCCC-CGUGA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN2455_c0_g1_3297_TPlot.pdf
TRINITY_DN2455_c0_g1:3303	si_s78	TRINITY_DN2455_c0_g1	3292	3312	3303	-26.20	-22.20	0.847328244274809	12.5	6-21,3307-3292	1-5,3312-3308[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGGAGAGGAAGGAGCAGCC&UUUUUUUCUUUCCUUUCUUCU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2455_c0_g1_3303_TPlot.pdf
TRINITY_DN2455_c0_g1:7142	si_a497	TRINITY_DN2455_c0_g1	7130	7152	7142	-32.00	-24.40	0.7625	8.5	1-5,7152-7148;6-12,7146-7140;13-21,7138-7130	x-x,7147-7147[BULt];x-x,7139-7139[BULt]	(((((((((.(((((((.(((((&)))))-)))))))-)))))))))	AGGGAAGACAGAAGAGCAGGCGU&AUGUC-GUUUUUC-GUCUUCCUU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2455_c0_g1_7142_TPlot.pdf
TRINITY_DN2455_c0_g1:8331	si_a787	TRINITY_DN2455_c0_g1	8320	8340	8331	-26.30	-21.70	0.82509505703422	7.5	1-13,8340-8328;15-20,8326-8321	14-14,8327-8327[SIL];21-21,8320-8320[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AGGGAGAGGGGGAAGUGGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2455_c0_g1_8331_TPlot.pdf
TRINITY_DN2455_c0_g2:4622	si_s76	TRINITY_DN2455_c0_g2	4610	4631	4622	-23.60	-16.80	0.711864406779661	6.5	1-14,4631-4618;16-21,4615-4610	15-15,4617-4616[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	GAGAAAAAGAAAGAAGAGGAGU&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2455_c0_g2_4622_TPlot.pdf
TRINITY_DN2455_c0_g2:4624	si_a783	TRINITY_DN2455_c0_g2	4613	4632	4624	-24.70	-16.10	0.651821862348178	9	2-9,4631-4624;11-17,4623-4617	1-1,4632-4632[UP5];10-10,x-x[BULq];18-21,4616-4613[UP3]	....(((((((-((((((((.&.)))))))).)))))))....	AAAAAGAAAGA-AGAGGAGUA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2455_c0_g2_4624_TPlot.pdf
TRINITY_DN2455_c0_g2:5173	si_s150	TRINITY_DN2455_c0_g2	5162	5182	5173	-39.70	-26.10	0.657430730478589	16	9-21,5174-5162	1-8,5182-5175[UP5]	(((((((((((((........&........)))))))))))))	GCCAUGGGCCUCCAAAAGCUG&AACCCAAAGGAGGUUCAUGGC	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s150_TRINITY_DN2455_c0_g2_5173_TPlot.pdf
TRINITY_DN2455_c0_g2:9104	si_a752	TRINITY_DN2455_c0_g2	9092	9112	9104	-34.80	-22.70	0.652298850574713	8.5	3-5,9110-9108;7-14,9107-9100;15-20,9098-9093	1-2,9112-9111[UP5];6-6,x-x[BULq];x-x,9099-9099[BULt];21-21,9092-9092[UP3]	.((((((.((((((((-(((..&..))).))))))))-)))))).	UGGACCCUGAAGGAGG-UCAAG&CAUGAACCUCCUUU-GGGUUUU	2	0.995080289302897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN2455_c0_g2_9104_TPlot.pdf
TRINITY_DN2455_c0_g2:9262	si_s898	TRINITY_DN2455_c0_g2	9251	9270	9262	-30.70	-24.30	0.791530944625407	7	1-5,9270-9266;7-18,9265-9254	6-6,x-x[BULq];19-21,9253-9251[UP3]	...((((((((((((-(((((&))))).))))))))))))...	UCGGAGGUUGAAGAG-GAGCC&GGCUUUCUCUUCAAUUUCAAU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN2455_c0_g2_9262_TPlot.pdf
TRINITY_DN2455_c1_g1:2129	si_a319	TRINITY_DN2455_c1_g1	2119	2138	2129	-22.40	-14.70	0.65625	8	1-10,2138-2129;12-18,2128-2122	11-11,x-x[BULq];19-21,2121-2119[UP3]	...(((((((-((((((((((&)))))))))).)))))))...	GACAAAGGAA-CAUGGGUGAA&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2455_c1_g1_2129_TPlot.pdf
TRINITY_DN2455_c1_g1:2130	si_a318	TRINITY_DN2455_c1_g1	2120	2139	2130	-22.50	-14.70	0.653333333333333	8	2-11,2138-2129;13-19,2128-2122	1-1,2139-2139[UP5];12-12,x-x[BULq];20-21,2121-2120[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	ACAAAGGAA-CAUGGGUGAAG&AUUUAUCCAUGAUUUUUUUAU	2	0.999999999847248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2455_c1_g1_2130_TPlot.pdf
TRINITY_DN2455_c1_g1:2419	si_a632	TRINITY_DN2455_c1_g1	2408	2428	2419	-26.10	-18.10	0.693486590038314	11.5	3-9,2426-2420;12-20,2417-2409	1-2,2428-2427[UP5];10-11,2419-2418[SIL];21-21,2408-2408[UP3]	.(((((((((..(((((((..&..)))))))..))))))))).	UCUCGAAGGAUGCGGCGUACC&AUUAUGUCGAUUUUUUUGAGU	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2455_c1_g1_2419_TPlot.pdf
TRINITY_DN2455_c1_g1:2578	si_s88	TRINITY_DN2455_c1_g1	2565	2588	2578	-34.80	-23.20	0.666666666666667	8.5	1-5,2588-2584;6-16,2582-2572;17-20,2569-2566	x-x,2583-2583[BULt];x-x,2571-2570[BULt];21-21,2565-2565[UP3]	.((((..(((((((((((.(((((&)))))-)))))))))))--)))).	UAAGCUUGAGGAGGAGGAGGAGGA&UCCUU-UCUUCUUCUUC--GCUUC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2455_c1_g1_2578_TPlot.pdf
TRINITY_DN2455_c1_g1:2579	si_s87	TRINITY_DN2455_c1_g1	2566	2589	2579	-32.90	-23.40	0.711246200607903	8.5	2-6,2588-2584;7-17,2582-2572;18-21,2569-2566	1-1,2589-2589[UP5];x-x,2583-2583[BULt];x-x,2571-2570[BULt]	((((..(((((((((((.(((((.&.)))))-)))))))))))--))))	AAGCUUGAGGAGGAGGAGGAGGAU&UUCCUU-UCUUCUUCUUC--GCUU	4	0.999999992451955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2455_c1_g1_2579_TPlot.pdf
TRINITY_DN2455_c1_g1:2580	si_s86	TRINITY_DN2455_c1_g1	2567	2590	2580	-32.90	-22.70	0.689969604863222	10	3-7,2588-2584;8-18,2582-2572;19-21,2569-2567	1-2,2590-2589[UP5];x-x,2583-2583[BULt];x-x,2571-2570[BULt]	(((..(((((((((((.(((((..&..)))))-)))))))))))--)))	AGCUUGAGGAGGAGGAGGAGGAUU&UUUCCUU-UCUUCUUCUUC--GCU	3	0.999999999999907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2455_c1_g1_2580_TPlot.pdf
TRINITY_DN2455_c1_g1:2581	si_s85	TRINITY_DN2455_c1_g1	2570	2591	2581	-33.80	-22.10	0.653846153846154	10.5	1-1,2591-2591;4-8,2588-2584;9-20,2582-2571	2-3,2590-2589[SIL];x-x,2583-2583[BULt];21-21,2570-2570[UP3]	.((((((((((((.(((((..(&)..)))))-)))))))))))).	UUGAGGAGGAGGAGGAGGAUUG&CUUUCCUU-UCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2455_c1_g1_2581_TPlot.pdf
TRINITY_DN2455_c1_g1:2582	si_s84	TRINITY_DN2455_c1_g1	2571	2592	2582	-32.30	-23.60	0.730650154798762	9.5	1-2,2592-2591;5-9,2588-2584;10-21,2582-2571	3-4,2590-2589[SIL];x-x,2583-2583[BULt]	((((((((((((.(((((..((&))..)))))-))))))))))))	UGAGGAGGAGGAGGAGGAUUGA&UCUUUCCUU-UCUUCUUCUUCG	2	0.999644022472936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2455_c1_g1_2582_TPlot.pdf
TRINITY_DN2455_c1_g1:2584	si_s83	TRINITY_DN2455_c1_g1	2572	2593	2584	-30.90	-23.80	0.770226537216829	8.5	1-3,2593-2591;6-10,2588-2584;11-21,2582-2572	4-5,2590-2589[SIL];x-x,2583-2583[BULt]	(((((((((((.(((((..(((&)))..)))))-)))))))))))	GAGGAGGAGGAGGAGGAUUGAA&UUCUUUCCUU-UCUUCUUCUUC	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2455_c1_g1_2584_TPlot.pdf
TRINITY_DN2455_c1_g1:2585	si_s82	TRINITY_DN2455_c1_g1	2573	2594	2585	-28.90	-21.50	0.743944636678201	8.5	1-4,2594-2591;7-11,2588-2584;12-21,2582-2573	5-6,2590-2589[SIL];x-x,2583-2583[BULt]	((((((((((.(((((..((((&))))..)))))-))))))))))	AGGAGGAGGAGGAGGAUUGAAA&UUUCUUUCCUU-UCUUCUUCUU	2	0.999998354356807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2455_c1_g1_2585_TPlot.pdf
TRINITY_DN2455_c1_g1:2587	si_s80	TRINITY_DN2455_c1_g1	2575	2596	2587	-28.20	-19.70	0.698581560283688	9.5	3-6,2594-2591;9-13,2588-2584;14-21,2582-2575	1-2,2596-2595[UP5];7-8,2590-2589[SIL];x-x,2583-2583[BULt]	((((((((.(((((..((((..&..))))..)))))-))))))))	GAGGAGGAGGAGGAUUGAAACG&UUUUUCUUUCCUU-UCUUCUUC	2	0.999999999999806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2455_c1_g1_2587_TPlot.pdf
TRINITY_DN2455_c2_g1:835	si_a424	TRINITY_DN2455_c2_g1	824	844	835	-28.40	-21.20	0.746478873239437	12.5	6-12,839-833;14-21,831-824	1-5,844-840[UP5];13-13,832-832[SIL]	((((((((.(((((((.....&.....))))))).))))))))	CAGCGGAUGCUGUGUUGAAAU&AAAUAAAUAUAGGAUCCGUUG	0	0.00548815211159415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN2455_c2_g1_835_TPlot.pdf
TRINITY_DN2456_c0_g1:1509	si_a406	TRINITY_DN2456_c0_g1	1498	1518	1509	-19.80	-13.50	0.681818181818182	11.5	1-8,1518-1511;10-17,1509-1502	9-9,1510-1510[SIL];18-21,1501-1498[UP3]	....((((((((.((((((((&)))))))).))))))))....	UAGCGAUAUGAGGAGAGCGAU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2456_c0_g1_1509_TPlot.pdf
TRINITY_DN2456_c0_g1:1519	si_a489	TRINITY_DN2456_c0_g1	1508	1528	1519	-27.70	-19.30	0.696750902527076	8.5	1-4,1528-1525;7-20,1522-1509	5-6,1524-1523[SIL];21-21,1508-1508[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGGAGAGCGAUAUAUGAUGUA&UAUAGAAUAUGUCGUUUUUCG	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN2456_c0_g1_1519_TPlot.pdf
TRINITY_DN24582_c0_g1:1551	si_s74	TRINITY_DN24582_c0_g1	1542	1560	1551	-25.00	-16.60	0.664	6.5	1-14,1560-1547;17-21,1546-1542	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	GGAAG--AAGAGGAGAAAUGG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN24582_c0_g1_1551_TPlot.pdf
TRINITY_DN24582_c0_g1:1552	si_s73	TRINITY_DN24582_c0_g1	1539	1561	1552	-24.00	-16.50	0.6875	9.5	1-15,1561-1547;16-18,1544-1542	x-x,1546-1545[BULt];19-21,1541-1539[UP3]	...(((..(((((((((((((((&)))))))))))))))--)))...	UACGGAAGAAGAGGAGAAAUGGG&UCUAUUUUUUUUCUU--UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN24582_c0_g1_1552_TPlot.pdf
TRINITY_DN24582_c0_g1:1554	si_s71	TRINITY_DN24582_c0_g1	1541	1563	1554	-25.70	-20.10	0.782101167315175	8.5	1-17,1563-1547;18-20,1544-1542	x-x,1546-1545[BULt];21-21,1541-1541[UP3]	.(((..(((((((((((((((((&)))))))))))))))))--))).	CGGAAGAAGAGGAGAAAUGGGGG&CUUCUAUUUUUUUUCUU--UCCU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN24582_c0_g1_1554_TPlot.pdf
TRINITY_DN24582_c0_g1:1555	si_a786	TRINITY_DN24582_c0_g1	1542	1564	1555	-26.60	-19.90	0.74812030075188	8	1-14,1564-1551;16-21,1547-1542	15-15,1550-1548[AILt]	((((((...((((((((((((((&))))))))))))))--.))))))	GGAAGAAGAGGAGAAAUGGGGGA&UCUUCUAUUUUUCU--AUUUUCC	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN24582_c0_g1_1555_TPlot.pdf
TRINITY_DN24582_c0_g1:1556	si_s69	TRINITY_DN24582_c0_g1	1545	1565	1556	-23.40	-18.30	0.782051282051282	9.5	3-20,1563-1546	1-2,1565-1564[UP5];21-21,1545-1545[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGAAGAGGAGAAAUGGGGGAC&AACUUCUAUUUUUUUUCUUUC	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN24582_c0_g1_1556_TPlot.pdf
TRINITY_DN24582_c0_g1:2146	si_s73	TRINITY_DN24582_c0_g1	2135	2159	2146	-24.00	-16.54	0.689166666666667	17	1-6,2159-2154;10-21,2146-2135	7-9,2153-2147[AILt]	((((((((((((.......((((((&))))))----...))))))))))))	AGAGGGAAGAAAUAUUGUUGAUGGA&UCUAUU----UUUUUUCUUUCCUUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN24582_c0_g1_2146_TPlot.pdf
TRINITY_DN24582_c0_g1:2147	si_s72	TRINITY_DN24582_c0_g1	2136	2160	2147	-24.10	-15.94	0.661410788381743	18	2-7,2159-2154;11-21,2146-2136	1-1,2160-2160[UP5];8-10,2153-2147[AILt]	(((((((((((.......((((((.&.))))))----...)))))))))))	GAGGGAAGAAAUAUUGUUGAUGGAC&UUCUAUU----UUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN24582_c0_g1_2147_TPlot.pdf
TRINITY_DN2459_c0_g1:1485	si_a809	TRINITY_DN2459_c0_g1	1474	1492	1485	-34.70	-23.00	0.662824207492795	6	1-6,1492-1487;9-19,1486-1476	7-8,x-x[BULq];20-21,1475-1474[UP3]	..(((((((((((--((((((&))))))..)))))))))))..	UAUCUUCUUCUUC--UUCGGA&UCCGAAGCGAAGAAGAAGAAA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN2459_c0_g1_1485_TPlot.pdf
TRINITY_DN2459_c0_g1:1487	si_a807	TRINITY_DN2459_c0_g1	1476	1494	1487	-34.80	-24.40	0.701149425287356	5	2-8,1493-1487;11-21,1486-1476	1-1,1494-1494[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	UCUUCUUCUUC--UUCGGAUG&AAUCCGAAGCGAAGAAGAAGA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a807_TRINITY_DN2459_c0_g1_1487_TPlot.pdf
TRINITY_DN2459_c0_g1:736	si_a894	TRINITY_DN2459_c0_g1	725	745	736	-21.70	-14.50	0.668202764976959	3.5	1-11,745-735;13-21,733-725	12-12,734-734[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AUAUUAUUUUUUAUUAUUAUA&UAUAGUAAUAAUAAGUAAUAU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN2459_c0_g1_736_TPlot.pdf
TRINITY_DN2459_c1_g1:2558	si_s82	TRINITY_DN2459_c1_g1	2547	2568	2558	-28.90	-20.80	0.719723183391003	7	2-8,2567-2561;10-21,2558-2547	1-1,2568-2568[UP5];9-9,2560-2559[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	AAGAAGAAGAAGAAGAGAGAAU&UUUCUUUC-CUUUCUUCUUCUU	0	0.545004398740043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2459_c1_g1_2558_TPlot.pdf
TRINITY_DN2459_c1_g2:875	si_a415	TRINITY_DN2459_c1_g2	864	884	875	-18.10	-13.18	0.72817679558011	5.5	1-14,884-871;18-21,867-864	15-17,870-868[SIL]	((((...((((((((((((((&))))))))))))))...))))	CUAUUUGUAUUUAAGUAUGAG&UUUAUAUUUAAAUAAAUAUAG	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN2459_c1_g2_875_TPlot.pdf
TRINITY_DN245_c0_g2:602	si_a857	TRINITY_DN245_c0_g2	591	611	602	-25.50	-17.30	0.67843137254902	9.5	1-13,611-599	14-21,598-591[UP3]	........(((((((((((((&)))))))))))))........	UUCAUUUCGUUGGAUUUCAGG&CUUGAAAUCCAAUUAUUAAAG	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a857_TRINITY_DN245_c0_g2_602_TPlot.pdf
TRINITY_DN245_c0_g2:604	si_a855	TRINITY_DN245_c0_g2	593	613	604	-24.70	-17.30	0.700404858299595	10.5	3-15,611-599	1-2,613-612[UP5];16-21,598-593[UP3]	......(((((((((((((..&..)))))))))))))......	CAUUUCGUUGGAUUUCAGGAU&AACUUGAAAUCCAAUUAUUAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN245_c0_g2_604_TPlot.pdf
TRINITY_DN245_c0_g2:605	si_a854	TRINITY_DN245_c0_g2	594	614	605	-25.00	-17.30	0.692	11.5	4-16,611-599	1-3,614-612[UP5];17-21,598-594[UP3]	.....(((((((((((((...&...))))))))))))).....	AUUUCGUUGGAUUUCAGGAUC&UAACUUGAAAUCCAAUUAUUA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN245_c0_g2_605_TPlot.pdf
TRINITY_DN245_c0_g2:606	si_a853	TRINITY_DN245_c0_g2	595	615	606	-26.30	-17.30	0.657794676806084	12.5	5-17,611-599	1-4,615-612[UP5];18-21,598-595[UP3]	....(((((((((((((....&....)))))))))))))....	UUUCGUUGGAUUUCAGGAUCA&CUAACUUGAAAUCCAAUUAUU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a853_TRINITY_DN245_c0_g2_606_TPlot.pdf
TRINITY_DN245_c2_g2:1166	si_a24	TRINITY_DN245_c2_g2	1155	1178	1166	-24.20	-16.20	0.669421487603306	9	1-9,1178-1170;10-19,1166-1157	x-x,1169-1167[BULt];20-21,1156-1155[UP3]	..((((((((((...(((((((((&)))))))))---))))))))))..	GACUUAGAACUAGGAAAAAUAGAU&AUUUAUUUU---UAGUUCUAAGAC	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN245_c2_g2_1166_TPlot.pdf
TRINITY_DN245_c2_g2:1169	si_a21	TRINITY_DN245_c2_g2	1158	1177	1169	-24.30	-17.50	0.720164609053498	5	2-7,1176-1171;9-21,1170-1158	1-1,1177-1177[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	UUAGAACUAGGAA-AAAUAGA&CCUAUUUAUUUUUAGUUCUAA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN245_c2_g2_1169_TPlot.pdf
TRINITY_DN2462_c0_g1:234	si_s76	TRINITY_DN2462_c0_g1	223	243	234	-23.60	-16.00	0.677966101694915	7	2-5,242-239;7-15,237-229;18-21,226-223	1-1,243-243[UP5];6-6,238-238[SIL];16-17,228-227[SIL]	((((..(((((((((.((((.&.)))).)))))))))..))))	GAGAUUGGGAAGAAGUAAAAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2462_c0_g1_234_TPlot.pdf
TRINITY_DN2462_c0_g1:654	si_a407	TRINITY_DN2462_c0_g1	642	663	654	-19.80	-13.50	0.681818181818182	7	3-13,661-651;14-19,649-644	1-2,663-662[UP5];x-x,650-650[BULt];20-21,643-642[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	GGUUAAAUAAUAAACAAGACUU&UUGUUUUGUUUAU-AUUUAAAU	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2462_c0_g1_654_TPlot.pdf
TRINITY_DN2464_c0_g1:4116	si_s620	TRINITY_DN2464_c0_g1	4098	4125	4116	-32.10	-21.30	0.663551401869159	21.5	4-12,4122-4114;13-21,4106-4098	1-3,4125-4123[UP5];x-x,4113-4107[BULt]	(((((((((.......(((((((((...&...)))))))))-------)))))))))	GCGAGAGGAGGCAACCUCGUUUGGAAGG&AAAUCCAAGCGA-------UCUUUUCGU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN2464_c0_g1_4116_TPlot.pdf
TRINITY_DN24655_c0_g1:129	si_a86	TRINITY_DN24655_c0_g1	118	138	129	-26.60	-18.60	0.699248120300752	6.5	1-16,138-123;18-18,121-121	17-17,122-122[SIL];19-21,120-118[UP3]	...(.((((((((((((((((&)))))))))))))))).)...	GCGAGCUUUUCUUGAUGAUGG&UCAUUAUUAAGAAAAGGUAAC	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN24655_c0_g1_129_TPlot.pdf
TRINITY_DN24655_c0_g1:133	si_a82	TRINITY_DN24655_c0_g1	122	142	133	-23.70	-18.00	0.759493670886076	11	5-20,138-123	1-4,142-139[UP5];21-21,122-122[UP3]	.((((((((((((((((....&....)))))))))))))))).	GCUUUUCUUGAUGAUGGUUUG&UUUUUCAUUAUUAAGAAAAGG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN24655_c0_g1_133_TPlot.pdf
TRINITY_DN24656_c0_g1:150	si_s437	TRINITY_DN24656_c0_g1	139	159	150	-19.70	-13.00	0.65989847715736	13	8-21,152-139	1-7,159-153[UP5]	((((((((((((((.......&.......))))))))))))))	UUAUAUAUAAUAUGACGAUAU&AUAAUUACAUAUUAUAUAUAA	2	0.999328428026691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN24656_c0_g1_150_TPlot.pdf
TRINITY_DN24656_c0_g1:76	si_a412	TRINITY_DN24656_c0_g1	65	85	76	-18.30	-15.30	0.836065573770492	4	1-10,85-76;13-21,73-65	11-12,75-74[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	UAUUUAUUUUUAUAUAAACAA&UUGUUUAUAUUUAAAUAAAUA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN24656_c0_g1_76_TPlot.pdf
TRINITY_DN24656_c0_g1:77	si_a411	TRINITY_DN24656_c0_g1	66	86	77	-17.90	-14.00	0.782122905027933	4	2-11,85-76;14-21,73-66	1-1,86-86[UP5];12-13,75-74[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AUUUAUUUUUAUAUAAACAAU&UUUGUUUAUAUUUAAAUAAAU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN24656_c0_g1_77_TPlot.pdf
TRINITY_DN24657_c0_g1:3609	si_a320	TRINITY_DN24657_c0_g1	3598	3619	3609	-24.40	-16.10	0.659836065573771	7.5	1-9,3619-3611;10-17,3609-3602	x-x,3610-3610[BULt];18-21,3601-3598[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AUACAGAAAGAUACAUGGAUAA&UUAUCCAUG-AUUUUUUUAUUC	3	0.999999983093593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN24657_c0_g1_3609_TPlot.pdf
TRINITY_DN24657_c0_g1:3612	si_a318	TRINITY_DN24657_c0_g1	3600	3621	3612	-22.50	-17.00	0.755555555555556	6	2-11,3620-3611;12-19,3609-3602	1-1,3621-3621[UP5];x-x,3610-3610[BULt];20-21,3601-3600[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	ACAGAAAGAUACAUGGAUAAAA&AUUUAUCCAUG-AUUUUUUUAU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN24657_c0_g1_3612_TPlot.pdf
TRINITY_DN2465_c0_g1:1497	si_s747	TRINITY_DN2465_c0_g1	1486	1506	1497	-28.70	-18.70	0.651567944250871	11.5	4-6,1503-1501;8-18,1499-1489	1-3,1506-1504[UP5];7-7,1500-1500[SIL];19-21,1488-1486[UP3]	...(((((((((((.(((...&...))).)))))))))))...	CUGGUUUUGAGGUCUGUCAUA&AUAGAUUGACCUUAAAACAAC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s747_TRINITY_DN2465_c0_g1_1497_TPlot.pdf
TRINITY_DN2465_c0_g1:2621	si_a329	TRINITY_DN2465_c0_g1	2607	2630	2621	-29.60	-19.90	0.672297297297297	11	5-16,2626-2615;17-21,2611-2607	1-4,2630-2627[UP5];x-x,2614-2612[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	CGGGAAAGUAGGGAAUAAAAUACU&AUUUUUUUAUUCCUUG---UCCCG	4	0.999998448438401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2465_c0_g1_2621_TPlot.pdf
TRINITY_DN2467_c0_g1:1759	si_a372	TRINITY_DN2467_c0_g1	1748	1768	1759	-29.40	-19.98	0.679591836734694	10.5	1-7,1768-1762;11-19,1758-1750	8-10,1761-1759[SIL];20-21,1749-1748[UP3]	..(((((((((...(((((((&)))))))...)))))))))..	ACCGAAGUCGUGUAUGAUCUG&CGGAUCAAAAAUGAUUUCGAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN2467_c0_g1_1759_TPlot.pdf
TRINITY_DN2467_c0_g1:1760	si_a371	TRINITY_DN2467_c0_g1	1749	1769	1760	-30.30	-21.38	0.705610561056106	9	1-8,1769-1762;12-20,1758-1750	9-11,1761-1759[SIL];21-21,1749-1749[UP3]	.(((((((((...((((((((&))))))))...))))))))).	CCGAAGUCGUGUAUGAUCUGA&UCGGAUCAAAAAUGAUUUCGA	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN2467_c0_g1_1760_TPlot.pdf
TRINITY_DN2467_c0_g1:1761	si_a370	TRINITY_DN2467_c0_g1	1750	1770	1761	-29.50	-21.58	0.731525423728813	8	1-9,1770-1762;13-21,1758-1750	10-12,1761-1759[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	CGAAGUCGUGUAUGAUCUGAU&AUCGGAUCAAAAAUGAUUUCG	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN2467_c0_g1_1761_TPlot.pdf
TRINITY_DN2467_c0_g1:1771	si_a360	TRINITY_DN2467_c0_g1	1760	1783	1771	-29.10	-19.02	0.65360824742268	14.5	1-4,1783-1780;7-19,1774-1762	5-6,1779-1775[AILt];20-21,1761-1760[UP3]	..(((((((((((((.....((((&))))---..)))))))))))))..	UAUGAUCUGAUCAAGUUCAGGGAA&UUCU---AUUUUGAUCGGAUCAAA	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN2467_c0_g1_1771_TPlot.pdf
TRINITY_DN2467_c0_g2:476	si_a372	TRINITY_DN2467_c0_g2	465	485	476	-29.40	-19.98	0.679591836734694	10.5	1-7,485-479;11-19,475-467	8-10,478-476[SIL];20-21,466-465[UP3]	..(((((((((...(((((((&)))))))...)))))))))..	ACCGAAGUCGUGUAUGAUCUG&CGGAUCAAAAAUGAUUUCGAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN2467_c0_g2_476_TPlot.pdf
TRINITY_DN2467_c0_g2:478	si_a370	TRINITY_DN2467_c0_g2	467	487	478	-29.50	-21.58	0.731525423728813	8	1-9,487-479;13-21,475-467	10-12,478-476[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	CGAAGUCGUGUAUGAUCUGAU&AUCGGAUCAAAAAUGAUUUCG	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN2467_c0_g2_478_TPlot.pdf
TRINITY_DN2467_c0_g2:482	si_a366	TRINITY_DN2467_c0_g2	471	491	482	-28.80	-20.68	0.718055555555556	5.5	1-13,491-479;17-21,475-471	14-16,478-476[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	GUCGUGUAUGAUCUGAUCAAG&UUUGAUCGGAUCAAAAAUGAU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a366_TRINITY_DN2467_c0_g2_482_TPlot.pdf
TRINITY_DN2467_c0_g2:488	si_a360	TRINITY_DN2467_c0_g2	477	500	488	-29.10	-19.02	0.65360824742268	14.5	1-4,500-497;7-19,491-479	5-6,496-492[AILt];20-21,478-477[UP3]	..(((((((((((((.....((((&))))---..)))))))))))))..	UAUGAUCUGAUCAAGUUCAGGGAA&UUCU---AUUUUGAUCGGAUCAAA	4	0.999497737729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN2467_c0_g2_488_TPlot.pdf
TRINITY_DN2468_c0_g1:1279	si_s552	TRINITY_DN2468_c0_g1	1268	1288	1279	-21.10	-14.00	0.663507109004739	3.5	1-14,1288-1275;16-20,1273-1269	15-15,1274-1274[SIL];21-21,1268-1268[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AGAAAACGUUAAUUUUAUUUU&AAAAUAGAAUUAAUAUUUUCG	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN2468_c0_g1_1279_TPlot.pdf
TRINITY_DN2468_c0_g1:968	si_a126	TRINITY_DN2468_c0_g1	957	977	968	-24.70	-17.30	0.700404858299595	11.5	1-5,977-973;7-16,971-962	6-6,972-972[SIL];17-21,961-957[UP3]	.....((((((((((.(((((&))))).)))))))))).....	UGCAAGCUAUUGCUGAGGAGC&GUUUUAUAGCAAUAGUAAUUA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN2468_c0_g1_968_TPlot.pdf
TRINITY_DN2468_c0_g1:969	si_a125	TRINITY_DN2468_c0_g1	958	978	969	-25.00	-17.40	0.696	11.5	2-6,977-973;8-17,971-962	1-1,978-978[UP5];7-7,972-972[SIL];18-21,961-958[UP3]	....((((((((((.(((((.&.))))).))))))))))....	GCAAGCUAUUGCUGAGGAGCG&UGUUUUAUAGCAAUAGUAAUU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN2468_c0_g1_969_TPlot.pdf
TRINITY_DN2468_c0_g1:970	si_a124	TRINITY_DN2468_c0_g1	959	979	970	-25.10	-17.40	0.693227091633466	12.5	3-7,977-973;9-18,971-962	1-2,979-978[UP5];8-8,972-972[SIL];19-21,961-959[UP3]	...((((((((((.(((((..&..))))).))))))))))...	CAAGCUAUUGCUGAGGAGCGU&UUGUUUUAUAGCAAUAGUAAU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN2468_c0_g1_970_TPlot.pdf
TRINITY_DN2468_c0_g1:971	si_a123	TRINITY_DN2468_c0_g1	960	980	971	-26.60	-17.40	0.654135338345865	13.5	4-8,977-973;10-19,971-962	1-3,980-978[UP5];9-9,972-972[SIL];20-21,961-960[UP3]	..((((((((((.(((((...&...))))).))))))))))..	AAGCUAUUGCUGAGGAGCGUG&CUUGUUUUAUAGCAAUAGUAA	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN2468_c0_g1_971_TPlot.pdf
TRINITY_DN2468_c0_g1:973	si_a121	TRINITY_DN2468_c0_g1	962	982	973	-29.30	-19.10	0.651877133105802	10.5	1-3,982-980;5-10,978-973;12-21,971-962	4-4,979-979[SIL];11-11,972-972[SIL]	((((((((((.((((((.(((&))).)))))).))))))))))	GCUAUUGCUGAGGAGCGUGUU&AGCUUGUUUUAUAGCAAUAGU	2	0.988531686919518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN2468_c0_g1_973_TPlot.pdf
TRINITY_DN2468_c0_g1:981	si_a68	TRINITY_DN2468_c0_g1	970	990	981	-25.40	-16.80	0.661417322834646	9	1-5,990-986;7-10,984-981;13-21,978-970	6-6,985-985[SIL];11-12,980-979[SIL]	(((((((((..((((.(((((&))))).))))..)))))))))	UGAGGAGCGUGUUGGUAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.999999999999622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2468_c0_g1_981_TPlot.pdf
TRINITY_DN2469_c0_g1:1670	si_a464	TRINITY_DN2469_c0_g1	1659	1680	1670	-19.60	-13.20	0.673469387755102	6.5	1-8,1680-1673;9-17,1671-1663	x-x,1672-1672[BULt];18-21,1662-1659[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	UUUUGUUACAUAUGUAUAUAUA&UAUAUAUA-AUAUGUAAUUAUU	2	0.991058844142749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN2469_c0_g1_1670_TPlot.pdf
TRINITY_DN2469_c0_g1:1673	si_a462	TRINITY_DN2469_c0_g1	1661	1682	1673	-21.20	-14.10	0.665094339622642	5.5	2-10,1681-1673;11-19,1671-1663	1-1,1682-1682[UP5];x-x,1672-1672[BULt];20-21,1662-1661[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	UUGUUACAUAUGUAUAUAUAAA&GUUAUAUAUA-AUAUGUAAUUA	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN2469_c0_g1_1673_TPlot.pdf
TRINITY_DN2469_c0_g1:1674	si_a461	TRINITY_DN2469_c0_g1	1662	1683	1674	-21.50	-14.10	0.655813953488372	6.5	3-11,1681-1673;12-20,1671-1663	1-2,1683-1682[UP5];x-x,1672-1672[BULt];21-21,1662-1662[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	UGUUACAUAUGUAUAUAUAAAG&UGUUAUAUAUA-AUAUGUAAUU	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN2469_c0_g1_1674_TPlot.pdf
TRINITY_DN246_c0_g1:159	si_s46	TRINITY_DN246_c0_g1	147	168	159	-25.00	-16.70	0.668	5.5	1-11,168-158;13-15,156-154;16-19,152-149	12-12,157-157[SIL];x-x,153-153[BULt];20-21,148-147[UP3]	..((((.(((.(((((((((((&))))))))))).)))-))))..	GCACUUAGGAUUCCAAUUAUUA&UAAUAAUUGGAUUUC-AAGUUA	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN246_c0_g1_159_TPlot.pdf
TRINITY_DN246_c0_g1:161	si_s44	TRINITY_DN246_c0_g1	149	170	161	-24.70	-17.10	0.692307692307692	4.5	2-13,169-158;15-17,156-154;18-21,152-149	1-1,170-170[UP5];14-14,157-157[SIL];x-x,153-153[BULt]	((((.(((.((((((((((((.&.)))))))))))).)))-))))	ACUUAGGAUUCCAAUUAUUAGU&UUUAAUAAUUGGAUUUC-AAGU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN246_c0_g1_161_TPlot.pdf
TRINITY_DN24708_c0_g1:2307	si_s491	TRINITY_DN24708_c0_g1	2296	2316	2307	-19.50	-13.60	0.697435897435897	6	1-7,2316-2310;9-16,2308-2301;19-21,2298-2296	8-8,2309-2309[SIL];17-18,2300-2299[SIL]	(((..((((((((.(((((((&))))))).))))))))..)))	GUUGGGUUUAUAUAUGAAUGA&UUAUUUAAAUAUAAACAAAAC	0	0.0573262718733907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN24708_c0_g1_2307_TPlot.pdf
TRINITY_DN24719_c0_g2:159	si_a405	TRINITY_DN24719_c0_g2	148	169	159	-19.80	-13.70	0.691919191919192	9	3-9,167-161;10-19,159-150	1-2,169-168[UP5];x-x,160-160[BULt];20-21,149-148[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	ACGAGUAUAAACAAAAGCAAGG&AAUUGUUUU-GUUUAUAUUUAA	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN24719_c0_g2_159_TPlot.pdf
TRINITY_DN24719_c0_g2:2401	si_s114	TRINITY_DN24719_c0_g2	2390	2410	2401	-26.60	-17.70	0.665413533834586	6	1-2,2410-2409;4-20,2407-2391	3-3,2408-2408[SIL];21-21,2390-2390[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	GCUUUUGUUUUUUUGUUUACC&GGAAAAUAGAAAAAUAGAAGA	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s114_TRINITY_DN24719_c0_g2_2401_TPlot.pdf
TRINITY_DN24719_c0_g2:2402	si_s113	TRINITY_DN24719_c0_g2	2391	2411	2402	-26.30	-18.30	0.695817490494297	5	1-3,2411-2409;5-21,2407-2391	4-4,2408-2408[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	CUUUUGUUUUUUUGUUUACCA&UGGAAAAUAGAAAAAUAGAAG	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s113_TRINITY_DN24719_c0_g2_2402_TPlot.pdf
TRINITY_DN24719_c0_g2:360	si_a154	TRINITY_DN24719_c0_g2	348	369	360	-27.00	-18.00	0.666666666666667	7.5	1-9,369-361;11-14,359-356;16-20,353-349	10-10,360-360[SIL];15-15,355-354[AILt];21-21,348-348[UP3]	.(((((..((((.(((((((((&))))))))).))))-.))))).	CAUGGAGAUGACGUUAGGACAA&UUGUUUUAAGGUCA-AUCUAUU	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN24719_c0_g2_360_TPlot.pdf
TRINITY_DN24719_c0_g2:361	si_a153	TRINITY_DN24719_c0_g2	349	370	361	-28.70	-19.30	0.672473867595819	7	1-10,370-361;12-15,359-356;17-21,353-349	11-11,360-360[SIL];16-16,355-354[AILt]	(((((..((((.((((((((((&)))))))))).))))-.)))))	AUGGAGAUGACGUUAGGACAAU&GUUGUUUUAAGGUCA-AUCUAU	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN24719_c0_g2_361_TPlot.pdf
TRINITY_DN24719_c0_g2:664	si_s80	TRINITY_DN24719_c0_g2	653	678	664	-28.20	-18.90	0.670212765957447	12.5	1-9,678-670;10-19,664-655	x-x,669-665[BULt];20-21,654-653[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	UCAGAAGAGAGGUUCUAAAAGAAAAA&UUUUUCUUU-----CCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN24719_c0_g2_664_TPlot.pdf
TRINITY_DN24719_c0_g2:670	si_s79	TRINITY_DN24719_c0_g2	654	679	670	-26.20	-19.10	0.729007633587786	12.5	2-10,678-670;11-20,664-655	1-1,679-679[UP5];x-x,669-665[BULt];21-21,654-654[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	CAGAAGAGAGGUUCUAAAAGAAAAAG&UUUUUUCUUU-----CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN24719_c0_g2_670_TPlot.pdf
TRINITY_DN24719_c0_g2:671	si_s78	TRINITY_DN24719_c0_g2	655	680	671	-26.20	-20.60	0.786259541984733	11.5	1-11,680-670;12-21,664-655	x-x,669-665[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	AGAAGAGAGGUUCUAAAAGAAAAAGA&UUUUUUUCUUU-----CCUUUCUUCU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN24719_c0_g2_671_TPlot.pdf
TRINITY_DN24719_c0_g2:672	si_s77	TRINITY_DN24719_c0_g2	656	681	672	-25.50	-19.50	0.764705882352941	12.5	2-12,680-670;13-21,664-656	1-1,681-681[UP5];x-x,669-665[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	GAAGAGAGGUUCUAAAAGAAAAAGAC&UUUUUUUUCUUU-----CCUUUCUUC	4	0.999999999865201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN24719_c0_g2_672_TPlot.pdf
TRINITY_DN24719_c0_g2:673	si_s76	TRINITY_DN24719_c0_g2	657	682	673	-23.60	-16.30	0.690677966101695	9.5	3-13,680-670;14-21,664-657	1-2,682-681[UP5];x-x,669-665[BULt]	((((((((.....(((((((((((..&..)))))))))))-----))))))))	AAGAGAGGUUCUAAAAGAAAAAGACG&AUUUUUUUUCUUU-----CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN24719_c0_g2_673_TPlot.pdf
TRINITY_DN24765_c0_g1:122	si_a787	TRINITY_DN24765_c0_g1	107	131	122	-26.30	-17.50	0.665399239543726	11.5	2-11,130-121;12-20,116-108	1-1,131-131[UP5];x-x,120-117[BULt];21-21,107-107[UP3]	.(((((((((....((((((((((.&.))))))))))----))))))))).	AGGAAAAUGGUCAAAAAAAUGGAAA&CUUCUAUUUUU----CUAUUUUCCA	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN24765_c0_g1_122_TPlot.pdf
TRINITY_DN2476_c0_g1:694	si_s598	TRINITY_DN2476_c0_g1	682	703	694	-28.20	-19.20	0.680851063829787	11	5-14,699-690;16-21,687-682	1-4,703-700[UP5];15-15,689-688[AILt]	((((((..((((((((((....&....))))))))))-.))))))	GAAGAGUUUUCGCUUGGGGUAC&UAAAUCCAAGCGAA-UCUUUUU	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN2476_c0_g1_694_TPlot.pdf
TRINITY_DN24776_c0_g1:100	si_s22	TRINITY_DN24776_c0_g1	89	109	100	-26.70	-17.70	0.662921348314607	10	1-14,109-96	15-21,95-89[UP3]	.......((((((((((((((&)))))))))))))).......	CAUGUGAUGCGAUCGAUAUGG&CUAUAUUGAUUGCAACUAAAU	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN24776_c0_g1_100_TPlot.pdf
TRINITY_DN2477_c0_g1:1029	si_a712	TRINITY_DN2477_c0_g1	1016	1038	1029	-28.20	-20.60	0.730496453900709	6	2-10,1037-1029;11-15,1027-1023;16-21,1021-1016	1-1,1038-1038[UP5];x-x,1028-1028[BULt];x-x,1022-1022[BULt]	((((((.(((((.(((((((((.&.)))))))))-)))))-))))))	GAGUGAUCGGUUCGUUUUGGAAC&AUUCCAAAAU-AAUCG-UUACUC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN2477_c0_g1_1029_TPlot.pdf
TRINITY_DN2477_c0_g1:770	si_s296	TRINITY_DN2477_c0_g1	759	779	770	-31.60	-21.60	0.683544303797468	5	2-14,778-766;16-19,764-761	1-1,779-779[UP5];15-15,765-765[SIL];20-21,760-759[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UAUUUCUCAAUUCCAAUCGGU&GUCGAUUGGAAUUGCGAAAAU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN2477_c0_g1_770_TPlot.pdf
TRINITY_DN2477_c0_g1:771	si_s295	TRINITY_DN2477_c0_g1	760	781	771	-32.20	-22.60	0.701863354037267	5	1-2,781-780;3-15,778-766;17-20,764-761	x-x,779-779[BULt];16-16,765-765[SIL];21-21,760-760[UP3]	.((((.(((((((((((((.((&))-))))))))))))).)))).	AUUUCUCAAUUCCAAUCGGUCU&AG-UCGAUUGGAAUUGCGAAAA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN2477_c0_g1_771_TPlot.pdf
TRINITY_DN2477_c0_g2:126	si_s95	TRINITY_DN2477_c0_g2	114	134	126	-36.30	-25.90	0.713498622589532	5.5	1-4,134-131;6-10,130-126;11-21,124-114	5-5,x-x[BULq];x-x,125-125[BULt]	(((((((((((.(((((-((((&)))).)))))-)))))))))))	UCGAUCCGGAGACGAAG-AGAA&UUCUUCUUCG-CUUCGGAUUGG	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN2477_c0_g2_126_TPlot.pdf
TRINITY_DN2477_c0_g2:1710	si_a494	TRINITY_DN2477_c0_g2	1698	1719	1710	-29.50	-19.90	0.674576271186441	11.5	6-17,1714-1703;18-21,1701-1698	1-5,1719-1715[UP5];x-x,1702-1702[BULt]	((((.((((((((((((.....&.....))))))))))))-))))	GGAGAACGAAAAAUGACGCAGA&AAUAUGUCGUUUUUCGU-CUUC	1	0.217230880339995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2477_c0_g2_1710_TPlot.pdf
TRINITY_DN24786_c0_g1:288	si_a498	TRINITY_DN24786_c0_g1	277	297	288	-33.50	-23.60	0.704477611940299	9.5	3-4,295-294;6-20,292-278	1-2,297-296[UP5];5-5,293-293[SIL];21-21,277-277[UP3]	.(((((((((((((((.((..&..)).))))))))))))))).	AAAGGGAGACGGAAGGGGAAA&UGUCGUUUUUCGUCUUCCUUG	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN24786_c0_g1_288_TPlot.pdf
TRINITY_DN2479_c0_g1:1042	si_s91	TRINITY_DN2479_c0_g1	1032	1051	1042	-34.70	-25.90	0.746397694524496	4	1-13,1051-1039;16-21,1037-1032	14-15,1038-1038[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	UCCGAAA-GAGGAAGAAGAGA&UUUCUUCUUCUUCGCUUCGGA	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2479_c0_g1_1042_TPlot.pdf
TRINITY_DN2479_c0_g1:893	si_a760	TRINITY_DN2479_c0_g1	881	902	893	-31.10	-23.40	0.752411575562701	7	1-10,902-893;12-18,891-885;19-20,883-882	11-11,892-892[SIL];x-x,884-884[BULt];21-21,881-881[UP3]	.((.(((((((.((((((((((&)))))))))).)))))))-)).	UUCUGAUCGAGUACCCAGAGGA&UCCUUUGGGUUUUUGAUU-GAU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2479_c0_g1_893_TPlot.pdf
TRINITY_DN247_c0_g1:364	si_s69	TRINITY_DN247_c0_g1	353	372	364	-23.40	-15.40	0.658119658119658	5.5	2-4,371-369;6-9,368-365;11-21,363-353	1-1,372-372[UP5];5-5,x-x[BULq];10-10,364-364[SIL]	(((((((((((.((((-(((.&.))).)))).)))))))))))	GGAAGAAAAAACAUAG-AGUA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN247_c0_g1_364_TPlot.pdf
TRINITY_DN2480_c0_g1:1835	si_a636	TRINITY_DN2480_c0_g1	1824	1844	1835	-26.30	-17.10	0.650190114068441	6.5	2-18,1843-1827	1-1,1844-1844[UP5];19-21,1826-1824[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUAUACUUAAAAAAAUUGAUU&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999998563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2480_c0_g1_1835_TPlot.pdf
TRINITY_DN2480_c0_g1:1836	si_a635	TRINITY_DN2480_c0_g1	1825	1845	1836	-26.10	-17.10	0.655172413793103	7.5	3-19,1843-1827	1-2,1845-1844[UP5];20-21,1826-1825[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAUACUUAAAAAAAUUGAUUU&AUGUCGAUUUUUUUGAGUAAU	3	0.99999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2480_c0_g1_1836_TPlot.pdf
TRINITY_DN2482_c4_g1:2063	si_a410	TRINITY_DN2482_c4_g1	2052	2072	2063	-17.80	-11.60	0.651685393258427	9.5	1-14,2072-2059	15-21,2058-2052[UP3]	.......((((((((((((((&)))))))))))))).......	UCAAUACAGAUAUAAACGAGA&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2482_c4_g1_2063_TPlot.pdf
TRINITY_DN2482_c6_g1:481	si_s1	TRINITY_DN2482_c6_g1	471	490	481	-18.70	-12.40	0.663101604278075	9.5	3-16,488-475;18-20,474-472	1-2,490-489[UP5];17-17,x-x[BULq];21-21,471-471[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	AGAU-GUAGGUGAUAUGAGUG&UUUUUAUAUUACUUAUUAUUA	3	0.999999999966196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN2482_c6_g1_481_TPlot.pdf
TRINITY_DN24834_c0_g1:1327	si_a402	TRINITY_DN24834_c0_g1	1316	1336	1327	-22.40	-14.70	0.65625	5	1-15,1336-1322;17-21,1320-1316	16-16,1321-1321[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AAUGUCGGCAAAAUAAUUUUG&UAGAAUUGUUUUGUUUAUAUU	3	0.999999999999715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN24834_c0_g1_1327_TPlot.pdf
TRINITY_DN24834_c0_g1:1422	si_s95	TRINITY_DN24834_c0_g1	1413	1431	1422	-36.30	-23.60	0.650137741046832	6	1-9,1431-1423;11-17,1421-1415;20-21,1414-1413	10-10,1422-1422[SIL];18-19,x-x[BULq]	((--(((((((.(((((((((&))))))))).)))))))..))	CC--UCCGAGGAGAAGAAGGA&UUCUUCUUCGCUUCGGAUUGG	2	0.99986516281768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN24834_c0_g1_1422_TPlot.pdf
TRINITY_DN24834_c0_g1:1423	si_s94	TRINITY_DN24834_c0_g1	1412	1432	1423	-35.50	-23.60	0.664788732394366	7.5	2-10,1431-1423;12-18,1421-1415	1-1,1432-1432[UP5];11-11,1422-1422[SIL];19-21,1414-1412[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	UCCUCCGAGGAGAAGAAGGAA&CUUCUUCUUCGCUUCGGAUUG	3	0.999999901613011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN24834_c0_g1_1423_TPlot.pdf
TRINITY_DN24834_c0_g1:1425	si_s92	TRINITY_DN24834_c0_g1	1414	1434	1425	-34.90	-23.60	0.67621776504298	8.5	4-12,1431-1423;14-20,1421-1415	1-3,1434-1432[UP5];13-13,1422-1422[SIL];21-21,1414-1414[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	CUCCGAGGAGAAGAAGGAACC&UUCUUCUUCUUCGCUUCGGAU	3	0.999999999825777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN24834_c0_g1_1425_TPlot.pdf
TRINITY_DN24834_c0_g1:1426	si_s91	TRINITY_DN24834_c0_g1	1415	1435	1426	-34.70	-23.50	0.677233429394813	9.5	5-13,1431-1423;15-21,1421-1415	1-4,1435-1432[UP5];14-14,1422-1422[SIL]	(((((((.(((((((((....&....))))))))).)))))))	UCCGAGGAGAAGAAGGAACCG&UUUCUUCUUCUUCGCUUCGGA	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN24834_c0_g1_1426_TPlot.pdf
TRINITY_DN24834_c0_g1:1427	si_s90	TRINITY_DN24834_c0_g1	1416	1439	1427	-35.30	-24.10	0.68271954674221	9.5	1-5,1439-1435;6-14,1431-1423;16-21,1421-1416	x-x,1434-1432[BULt];15-15,1422-1422[SIL]	((((((.(((((((((...(((((&)))))---))))))))).))))))	CCGAGGAGAAGAAGGAACCGGAAG&CUUUC---UUCUUCUUCGCUUCGG	3	0.999999999337229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN24834_c0_g1_1427_TPlot.pdf
TRINITY_DN24834_c0_g1:1428	si_s82	TRINITY_DN24834_c0_g1	1418	1439	1428	-28.90	-19.60	0.678200692041523	9	2-5,1438-1435;6-11,1432-1427;13-21,1426-1418	1-1,1439-1439[UP5];x-x,1434-1433[BULt];12-12,x-x[BULq]	(((((((((-((((((..((((.&.))))--)))))).)))))))))	GAGGAGAAG-AAGGAACCGGAAG&UUUCU--UUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN24834_c0_g1_1428_TPlot.pdf
TRINITY_DN24834_c0_g1:1429	si_s82	TRINITY_DN24834_c0_g1	1418	1442	1429	-28.90	-22.50	0.778546712802768	12	1-8,1442-1435;9-21,1430-1418	x-x,1434-1431[BULt]	(((((((((((((....((((((((&))))))))----)))))))))))))	GAGGAGAAGAAGGAACCGGAAGAGA&UUUCUUUC----CUUUCUUCUUCUU	2	0.999012228093801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN24834_c0_g1_1429_TPlot.pdf
TRINITY_DN24834_c0_g1:1430	si_s81	TRINITY_DN24834_c0_g1	1419	1443	1430	-28.90	-22.20	0.768166089965398	11.5	1-9,1443-1435;10-21,1430-1419	x-x,1434-1431[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	AGGAGAAGAAGGAACCGGAAGAGAA&UUUUCUUUC----CUUUCUUCUUCU	2	0.999806552470596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN24834_c0_g1_1430_TPlot.pdf
TRINITY_DN24834_c0_g1:1431	si_s83	TRINITY_DN24834_c0_g1	1420	1443	1431	-30.90	-22.50	0.728155339805825	8.5	1-6,1443-1438;7-8,1436-1435;9-21,1432-1420	x-x,1437-1437[BULt];x-x,1434-1433[BULt]	(((((((((((((..((.((((((&))))))-))--)))))))))))))	GGAGAAGAAGGAACCGGAAGAGAA&UUCUUU-CC--UUUCUUCUUCUUC	2	0.999996856518178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN24834_c0_g1_1431_TPlot.pdf
TRINITY_DN24834_c0_g1:1440	si_s72	TRINITY_DN24834_c0_g1	1427	1449	1440	-24.10	-15.90	0.659751037344398	8.5	1-4,1449-1446;6-15,1444-1435;16-21,1432-1427	5-5,1445-1445[SIL];x-x,1434-1433[BULt]	((((((..((((((((((.((((&)))).))))))))))--))))))	AAGGAACCGGAAGAGAAGAAGGA&UUCUAUUUUUUUUCU--UUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN24834_c0_g1_1440_TPlot.pdf
TRINITY_DN24834_c0_g1:1446	si_s78	TRINITY_DN24834_c0_g1	1435	1455	1446	-26.20	-20.30	0.774809160305344	4.5	1-12,1455-1444;14-21,1442-1435	13-13,1443-1443[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAAGAGAAGAAGGAAGAAAG&UUUUUUUCUUUCCUUUCUUCU	4	0.999999956363713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN24834_c0_g1_1446_TPlot.pdf
TRINITY_DN24834_c0_g1:1468	si_a499	TRINITY_DN24834_c0_g1	1458	1477	1468	-35.20	-23.10	0.65625	5	1-3,1477-1475;5-10,1473-1468;12-21,1467-1458	4-4,1474-1474[SIL];11-11,x-x[BULq]	((((((((((-((((((.(((&))).)))))).))))))))))	CCAAGGAGGA-GAAAAAAGAU&GUCGUUUUUCGUCUUCCUUGG	2	0.999999966543637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN24834_c0_g1_1468_TPlot.pdf
TRINITY_DN24834_c0_g1:1469	si_s75	TRINITY_DN24834_c0_g1	1457	1478	1469	-24.00	-15.60	0.65	6	1-13,1478-1466;14-18,1464-1460	x-x,1465-1465[BULt];19-21,1459-1457[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	GCCAAGGAGGAGAAAAAAGAUG&UAUUUUUUUUCUU-UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN24834_c0_g1_1469_TPlot.pdf
TRINITY_DN24834_c0_g1:1470	si_s74	TRINITY_DN24834_c0_g1	1458	1479	1470	-25.00	-16.30	0.652	6.5	2-14,1478-1466;15-19,1464-1460	1-1,1479-1479[UP5];x-x,1465-1465[BULt];20-21,1459-1458[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	CCAAGGAGGAGAAAAAAGAUGA&CUAUUUUUUUUCUU-UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN24834_c0_g1_1470_TPlot.pdf
TRINITY_DN24834_c0_g1:1472	si_s72	TRINITY_DN24834_c0_g1	1460	1482	1472	-24.10	-18.00	0.746887966804979	4.5	1-4,1482-1479;5-16,1477-1466;17-21,1464-1460	x-x,1478-1478[BULt];x-x,1465-1465[BULt]	(((((.((((((((((((.((((&))))-))))))))))))-)))))	AAGGAGGAGAAAAAAGAUGAGAA&UUCU-AUUUUUUUUCUU-UCCUU	4	0.999999997018632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN24834_c0_g1_1472_TPlot.pdf
TRINITY_DN24834_c0_g1:1473	si_s71	TRINITY_DN24834_c0_g1	1461	1483	1473	-25.70	-20.10	0.782101167315175	4.5	1-5,1483-1479;6-17,1477-1466;18-21,1464-1461	x-x,1478-1478[BULt];x-x,1465-1465[BULt]	((((.((((((((((((.(((((&)))))-))))))))))))-))))	AGGAGGAGAAAAAAGAUGAGAAG&CUUCU-AUUUUUUUUCUU-UCCU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN24834_c0_g1_1473_TPlot.pdf
TRINITY_DN24834_c0_g1:1474	si_s70	TRINITY_DN24834_c0_g1	1462	1484	1474	-25.80	-18.80	0.728682170542636	5.5	2-6,1483-1479;7-18,1477-1466;19-21,1464-1462	1-1,1484-1484[UP5];x-x,1478-1478[BULt];x-x,1465-1465[BULt]	(((.((((((((((((.(((((.&.)))))-))))))))))))-)))	GGAGGAGAAAAAAGAUGAGAAGA&ACUUCU-AUUUUUUUUCUU-UCC	3	0.999998660078045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN24834_c0_g1_1474_TPlot.pdf
TRINITY_DN24834_c0_g1:1475	si_s69	TRINITY_DN24834_c0_g1	1464	1485	1475	-23.40	-16.00	0.683760683760684	8	3-7,1483-1479;8-20,1477-1465	1-2,1485-1484[UP5];x-x,1478-1478[BULt];21-21,1464-1464[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	AGGAGAAAAAAGAUGAGAAGAA&AACUUCU-AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN24834_c0_g1_1475_TPlot.pdf
TRINITY_DN24846_c0_g1:2081	si_a801	TRINITY_DN24846_c0_g1	2071	2090	2081	-34.60	-22.80	0.658959537572254	7	1-7,2090-2084;10-18,2081-2073;20-21,2072-2071	8-9,2083-2082[SIL];19-19,x-x[BULq]	((-(((((((((..(((((((&)))))))..))))))))).))	UC-UCGCUUUGGCCUGGAGAA&UUUUCCAAUCCGAAGCGAAGA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN24846_c0_g1_2081_TPlot.pdf
TRINITY_DN24846_c0_g1:2083	si_a799	TRINITY_DN24846_c0_g1	2072	2092	2083	-32.50	-23.50	0.723076923076923	7.5	2-9,2091-2084;12-20,2081-2073	1-1,2092-2092[UP5];10-11,2083-2082[SIL];21-21,2072-2072[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CUCGCUUUGGCCUGGAGAAUC&UAUUUUCCAAUCCGAAGCGAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN24846_c0_g1_2083_TPlot.pdf
TRINITY_DN24846_c0_g1:2084	si_a798	TRINITY_DN24846_c0_g1	2073	2093	2084	-34.10	-23.20	0.680351906158358	8.5	3-10,2091-2084;13-21,2081-2073	1-2,2093-2092[UP5];11-12,2083-2082[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	UCGCUUUGGCCUGGAGAAUCU&CUAUUUUCCAAUCCGAAGCGA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN24846_c0_g1_2084_TPlot.pdf
TRINITY_DN24846_c0_g1:526	si_s44	TRINITY_DN24846_c0_g1	516	535	526	-24.70	-16.32	0.660728744939271	5.5	1-12,535-524;17-21,520-516	13-16,523-521[AILq]	(((((...-((((((((((((&))))))))))))....)))))	GCUUGUGC-CCAAUUAUUGAA&UUUAAUAAUUGGAUUUCAAGU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN24846_c0_g1_526_TPlot.pdf
TRINITY_DN2484_c0_g1:1176	si_a785	TRINITY_DN2484_c0_g1	1165	1186	1176	-25.90	-17.80	0.687258687258687	7	2-7,1185-1180;8-16,1178-1170;18-21,1168-1165	1-1,1186-1186[UP5];x-x,1179-1179[BULt];17-17,1169-1169[SIL]	((((.(((((((((.((((((.&.))))))-))))))))).))))	GAGAUUGGAAGGAUGAGAAGAA&CUCUUCU-AUUUUUCUAUUUUC	3	0.99999999999813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2484_c0_g1_1176_TPlot.pdf
TRINITY_DN2484_c0_g1:1177	si_s79	TRINITY_DN2484_c0_g1	1165	1187	1177	-26.20	-17.50	0.66793893129771	8	2-9,1186-1179;10-16,1177-1171;18-21,1168-1165	1-1,1187-1187[UP5];x-x,1178-1178[BULt];17-17,1170-1169[AILt]	((((..(((((((.((((((((.&.))))))))-)))))))-.))))	GAGAUUGGAAGGAUGAGAAGAAC&UUUUUUCUU-UCCUUUC-UUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2484_c0_g1_1177_TPlot.pdf
TRINITY_DN2484_c0_g1:1221	si_a502	TRINITY_DN2484_c0_g1	1210	1230	1221	-32.10	-22.00	0.685358255451713	8.5	1-6,1230-1225;9-18,1222-1213	7-8,1224-1223[SIL];19-21,1212-1210[UP3]	...((((((((((..((((((&))))))..))))))))))...	AAACCGAGGAAGAGCAAAAGC&GUUUUUCGUCUUCCUUGGAAU	4	0.999999950610235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2484_c0_g1_1221_TPlot.pdf
TRINITY_DN2484_c0_g1:1222	si_a501	TRINITY_DN2484_c0_g1	1211	1231	1222	-33.50	-22.40	0.66865671641791	8.5	2-7,1230-1225;10-19,1222-1213	1-1,1231-1231[UP5];8-9,1224-1223[SIL];20-21,1212-1211[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	AACCGAGGAAGAGCAAAAGCU&CGUUUUUCGUCUUCCUUGGAA	3	0.99999999806211	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2484_c0_g1_1222_TPlot.pdf
TRINITY_DN2484_c0_g1:1223	si_a500	TRINITY_DN2484_c0_g1	1212	1232	1223	-34.40	-22.40	0.651162790697674	9.5	3-8,1230-1225;11-20,1222-1213	1-2,1232-1231[UP5];9-10,1224-1223[SIL];21-21,1212-1212[UP3]	.((((((((((..((((((..&..))))))..)))))))))).	ACCGAGGAAGAGCAAAAGCUG&UCGUUUUUCGUCUUCCUUGGA	3	0.99999999999714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2484_c0_g1_1223_TPlot.pdf
TRINITY_DN2484_c0_g1:1235	si_s84	TRINITY_DN2484_c0_g1	1214	1244	1235	-32.30	-21.30	0.659442724458204	23.5	3-12,1242-1233;13-21,1222-1214	1-2,1244-1243[UP5];x-x,1232-1223[BULt]	(((((((((..........((((((((((..&..))))))))))----------)))))))))	CGAGGAAGAGCAAAAGCUGAGAAAGGAAAAG&UCUUUCCUUUCU----------UCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2484_c0_g1_1235_TPlot.pdf
TRINITY_DN2484_c0_g1:1236	si_s83	TRINITY_DN2484_c0_g1	1215	1246	1236	-30.90	-20.20	0.653721682847896	13.5	1-6,1246-1241;7-13,1239-1233;14-21,1222-1215	x-x,1240-1240[BULt];x-x,1232-1223[BULt]	((((((((..........(((((((.((((((&))))))-)))))))----------))))))))	GAGGAAGAGCAAAAGCUGAGAAAGGAAAAGGA&UUCUUU-CCUUUCU----------UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2484_c0_g1_1236_TPlot.pdf
TRINITY_DN2484_c0_g1:1241	si_s79	TRINITY_DN2484_c0_g1	1229	1250	1241	-26.20	-17.80	0.679389312977099	8.5	1-10,1250-1241;11-18,1239-1232	x-x,1240-1240[BULt];19-21,1231-1229[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	GCUGAGAAAGGAAAAGGAGGAA&UUUUUUCUUU-CCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2484_c0_g1_1241_TPlot.pdf
TRINITY_DN2484_c0_g1:1243	si_s77	TRINITY_DN2484_c0_g1	1231	1252	1243	-25.50	-19.60	0.768627450980392	6.5	1-12,1252-1241;13-20,1239-1232	x-x,1240-1240[BULt];21-21,1231-1231[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	UGAGAAAGGAAAAGGAGGAAAA&UUUUUUUUCUUU-CCUUUCUUC	3	0.99999999752924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2484_c0_g1_1243_TPlot.pdf
TRINITY_DN2484_c0_g1:1247	si_s76	TRINITY_DN2484_c0_g1	1232	1256	1247	-23.60	-19.80	0.838983050847458	11.5	1-12,1256-1245;13-21,1240-1232	x-x,1244-1241[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	GAGAAAGGAAAAGGAGGAAAAAGAU&AUUUUUUUUCUU----UCCUUUCUU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2484_c0_g1_1247_TPlot.pdf
TRINITY_DN2484_c0_g1:1248	si_s75	TRINITY_DN2484_c0_g1	1233	1257	1248	-24.00	-19.50	0.8125	7	1-13,1257-1245;14-21,1240-1233	x-x,1244-1241[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	AGAAAGGAAAAGGAGGAAAAAGAUG&UAUUUUUUUUCUU----UCCUUUCU	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2484_c0_g1_1248_TPlot.pdf
TRINITY_DN2484_c0_g1:1249	si_s74	TRINITY_DN2484_c0_g1	1234	1258	1249	-25.00	-21.30	0.852	7.5	1-14,1258-1245;15-21,1240-1234	x-x,1244-1241[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	GAAAGGAAAAGGAGGAAAAAGAUGG&CUAUUUUUUUUCUU----UCCUUUC	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2484_c0_g1_1249_TPlot.pdf
TRINITY_DN2484_c0_g1:1250	si_s73	TRINITY_DN2484_c0_g1	1235	1259	1250	-24.00	-19.50	0.8125	7.5	1-15,1259-1245;16-21,1240-1235	x-x,1244-1241[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	AAAGGAAAAGGAGGAAAAAGAUGGA&UCUAUUUUUUUUCUU----UCCUUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2484_c0_g1_1250_TPlot.pdf
TRINITY_DN2484_c0_g1:1251	si_s72	TRINITY_DN2484_c0_g1	1236	1260	1251	-24.10	-18.70	0.775933609958506	8	2-16,1259-1245;17-21,1240-1236	1-1,1260-1260[UP5];x-x,1244-1241[BULt]	(((((....(((((((((((((((.&.)))))))))))))))----)))))	AAGGAAAAGGAGGAAAAAGAUGGAC&UUCUAUUUUUUUUCUU----UCCUU	3	0.99998247581855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2484_c0_g1_1251_TPlot.pdf
TRINITY_DN2484_c0_g1:1252	si_s71	TRINITY_DN2484_c0_g1	1237	1261	1252	-25.70	-17.80	0.692607003891051	10	3-17,1259-1245;18-21,1240-1237	1-2,1261-1260[UP5];x-x,1244-1241[BULt]	((((....(((((((((((((((..&..)))))))))))))))----))))	AGGAAAAGGAGGAAAAAGAUGGACC&CUUCUAUUUUUUUUCUU----UCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2484_c0_g1_1252_TPlot.pdf
TRINITY_DN2484_c0_g1:1377	si_a71	TRINITY_DN2484_c0_g1	1366	1386	1377	-23.30	-16.40	0.703862660944206	7	1-14,1386-1373;17-20,1370-1367	15-16,1372-1371[SIL];21-21,1366-1366[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AAAUGUUGGAUAGUUUGGAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999991880123019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN2484_c0_g1_1377_TPlot.pdf
TRINITY_DN2484_c0_g1:1378	si_a70	TRINITY_DN2484_c0_g1	1367	1387	1378	-23.90	-17.70	0.740585774058577	6	1-15,1387-1373;18-21,1370-1367	16-17,1372-1371[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	AAUGUUGGAUAGUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2484_c0_g1_1378_TPlot.pdf
TRINITY_DN2484_c0_g1:1379	si_a69	TRINITY_DN2484_c0_g1	1368	1388	1379	-24.00	-17.70	0.7375	5.5	1-16,1388-1373;19-21,1370-1368	17-18,1372-1371[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	AUGUUGGAUAGUUUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2484_c0_g1_1379_TPlot.pdf
TRINITY_DN2484_c0_g1:1380	si_a68	TRINITY_DN2484_c0_g1	1369	1389	1380	-25.40	-16.70	0.65748031496063	6.5	2-17,1388-1373;20-21,1370-1369	1-1,1389-1389[UP5];18-19,1372-1371[SIL]	((..((((((((((((((((.&.))))))))))))))))..))	UGUUGGAUAGUUUGGAAGAAA&CUUCUUUCAAAUUGUUUUUCA	3	0.999999999999935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2484_c0_g1_1380_TPlot.pdf
TRINITY_DN2484_c0_g1:1381	si_a67	TRINITY_DN2484_c0_g1	1370	1391	1381	-27.20	-18.20	0.669117647058823	8	1-4,1391-1388;5-18,1386-1373	x-x,1387-1387[BULt];19-21,1372-1370[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	GUUGGAUAGUUUGGAAGAAAGC&GCUU-CUUUCAAAUUGUUUUUC	3	0.99999999963153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2484_c0_g1_1381_TPlot.pdf
TRINITY_DN2484_c0_g1:1382	si_a66	TRINITY_DN2484_c0_g1	1371	1392	1382	-26.70	-18.30	0.685393258426966	8	2-5,1391-1388;6-19,1386-1373	1-1,1392-1392[UP5];x-x,1387-1387[BULt];20-21,1372-1371[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	UUGGAUAGUUUGGAAGAAAGCA&CGCUU-CUUUCAAAUUGUUUUU	4	0.999999992133814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2484_c0_g1_1382_TPlot.pdf
TRINITY_DN2484_c0_g1:1383	si_a65	TRINITY_DN2484_c0_g1	1372	1393	1383	-27.70	-18.30	0.660649819494585	9	3-6,1391-1388;7-20,1386-1373	1-2,1393-1392[UP5];x-x,1387-1387[BULt];21-21,1372-1372[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	UGGAUAGUUUGGAAGAAAGCAU&UCGCUU-CUUUCAAAUUGUUUU	4	0.99999999839502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN2484_c0_g1_1383_TPlot.pdf
TRINITY_DN2484_c0_g1:1647	si_a547	TRINITY_DN2484_c0_g1	1636	1656	1647	-26.90	-18.40	0.684014869888476	8.5	1-14,1656-1643	15-21,1642-1636[UP3]	.......((((((((((((((&)))))))))))))).......	CCAGAAUGGAAUGGAUUGAAC&GUUCAAUCUAUUUCUUUAUCU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN2484_c0_g1_1647_TPlot.pdf
TRINITY_DN2484_c0_g1:1649	si_a545	TRINITY_DN2484_c0_g1	1638	1658	1649	-28.10	-18.40	0.654804270462633	9.5	3-16,1656-1643	1-2,1658-1657[UP5];17-21,1642-1638[UP3]	.....((((((((((((((..&..)))))))))))))).....	AGAAUGGAAUGGAUUGAACAU&CGGUUCAAUCUAUUUCUUUAU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN2484_c0_g1_1649_TPlot.pdf
TRINITY_DN2484_c0_g1:2052	si_s81	TRINITY_DN2484_c0_g1	2041	2062	2052	-28.90	-20.60	0.71280276816609	7	1-9,2062-2054;11-21,2051-2041	10-10,2053-2052[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	AGAAGAGGGAAAAGGAAGAGAA&UUUUCUUUC-CUUUCUUCUUCU	2	0.999999999839451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2484_c0_g1_2052_TPlot.pdf
TRINITY_DN2484_c0_g1:2053	si_s82	TRINITY_DN2484_c0_g1	2040	2063	2053	-28.90	-20.10	0.695501730103806	9.5	1-7,2063-2057;8-10,2055-2053;11-20,2050-2041	x-x,2056-2056[BULt];x-x,2052-2051[BULt];21-21,2040-2040[UP3]	.((((((((((..(((.(((((((&)))))))-)))--)))))))))).	CAGAAGAGGGAAAAGGAAGAGAAA&UUUCUUU-CCU--UUCUUCUUCUU	2	0.999999999999739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2484_c0_g1_2053_TPlot.pdf
TRINITY_DN2484_c0_g1:2055	si_s80	TRINITY_DN2484_c0_g1	2042	2065	2055	-28.20	-20.80	0.73758865248227	9	1-9,2065-2057;10-12,2055-2053;13-21,2050-2042	x-x,2056-2056[BULt];x-x,2052-2051[BULt]	(((((((((..(((.(((((((((&)))))))))-)))--)))))))))	GAAGAGGGAAAAGGAAGAGAAAGA&UUUUUCUUU-CCU--UUCUUCUUC	2	0.99999976093547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2484_c0_g1_2055_TPlot.pdf
TRINITY_DN2484_c0_g1:2056	si_s78	TRINITY_DN2484_c0_g1	2041	2065	2056	-26.20	-19.60	0.748091603053435	12	1-12,2065-2054;13-21,2049-2041	x-x,2053-2050[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	AGAAGAGGGAAAAGGAAGAGAAAGA&UUUUUUUCUUUC----CUUUCUUCU	2	0.999999904824886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2484_c0_g1_2056_TPlot.pdf
TRINITY_DN2484_c0_g1:2057	si_s77	TRINITY_DN2484_c0_g1	2042	2066	2057	-25.50	-19.30	0.756862745098039	8	1-13,2066-2054;14-21,2049-2042	x-x,2053-2050[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	GAAGAGGGAAAAGGAAGAGAAAGAA&UUUUUUUUCUUUC----CUUUCUUC	2	0.999999601771636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2484_c0_g1_2057_TPlot.pdf
TRINITY_DN2484_c0_g1:2058	si_s72	TRINITY_DN2484_c0_g1	2046	2066	2058	-24.10	-15.80	0.655601659751037	6	1-4,2066-2063;6-17,2062-2051;18-21,2049-2046	5-5,x-x[BULq];x-x,2050-2050[BULt]	((((.((((((((((((-((((&)))).))))))))))))-))))	AGGGAAAAGGAAGAGAA-AGAA&UUCUAUUUUUUUUCUUU-CCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2484_c0_g1_2058_TPlot.pdf
TRINITY_DN2484_c0_g1:2059	si_s71	TRINITY_DN2484_c0_g1	2047	2067	2059	-25.70	-17.30	0.673151750972763	6	1-5,2067-2063;7-18,2062-2051;19-21,2049-2047	6-6,x-x[BULq];x-x,2050-2050[BULt]	(((.((((((((((((-(((((&))))).))))))))))))-)))	GGGAAAAGGAAGAGAA-AGAAG&CUUCUAUUUUUUUUCUUU-CCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2484_c0_g1_2059_TPlot.pdf
TRINITY_DN2484_c0_g1:2060	si_a67	TRINITY_DN2484_c0_g1	2049	2068	2060	-27.20	-18.10	0.665441176470588	7.5	1-9,2068-2060;13-14,2057-2056;16-21,2054-2049	10-12,2059-2058[AILq];15-15,2055-2055[SIL]	((((((.((..-(((((((((&)))))))))...)).))))))	GAAAAGGAAGA-GAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.99999964397168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2484_c0_g1_2060_TPlot.pdf
TRINITY_DN2484_c0_g1:2065	si_s69	TRINITY_DN2484_c0_g1	2054	2075	2065	-23.40	-16.20	0.692307692307692	11	3-6,2073-2070;9-21,2066-2054	1-2,2075-2074[UP5];7-8,2069-2067[AILt]	(((((((((((((...((((..&..))))-..)))))))))))))	GGAAGAGAAAGAAGCUGAAGAA&AACUUC-UAUUUUUUUUCUUUC	2	0.999999999999127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2484_c0_g1_2065_TPlot.pdf
TRINITY_DN2484_c0_g1:2080	si_s69	TRINITY_DN2484_c0_g1	2069	2089	2080	-23.40	-16.20	0.692307692307692	7.5	3-7,2087-2083;9-20,2081-2070	1-2,2089-2088[UP5];8-8,2082-2082[SIL];21-21,2069-2069[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGAAGAAAAGAAAAAGAAGGA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999997915	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2484_c0_g1_2080_TPlot.pdf
TRINITY_DN2484_c0_g1:2081	si_s68	TRINITY_DN2484_c0_g1	2070	2090	2081	-23.10	-16.20	0.701298701298701	8	4-8,2087-2083;10-21,2081-2070	1-3,2090-2088[UP5];9-9,2082-2082[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAAAAGAAAAAGAAGGAA&CAACUUCUAUUUUUUUUCUUU	2	0.999999791523593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2484_c0_g1_2081_TPlot.pdf
TRINITY_DN2484_c0_g1:2179	si_s70	TRINITY_DN2484_c0_g1	2168	2191	2179	-25.80	-17.90	0.693798449612403	14	1-9,2191-2183;13-21,2176-2168	10-12,2182-2177[AILt]	(((((((((......(((((((((&)))))))))---...)))))))))	GGAAGGAGACACCUCAAUGGAAGU&ACUUCUAUU---UUUUUUCUUUCC	2	0.99999999718923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2484_c0_g1_2179_TPlot.pdf
TRINITY_DN2484_c0_g1:2250	si_a499	TRINITY_DN2484_c0_g1	2239	2258	2250	-35.20	-24.20	0.6875	8	1-8,2258-2251;10-17,2250-2243	9-9,x-x[BULq];18-21,2242-2239[UP3]	....((((((((-((((((((&)))))))).))))))))....	UGUUGGAAGGCG-AAGACGAC&GUCGUUUUUCGUCUUCCUUGG	2	0.999866830620927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN2484_c0_g1_2250_TPlot.pdf
TRINITY_DN2484_c0_g1:2251	si_a497	TRINITY_DN2484_c0_g1	2241	2260	2251	-32.00	-24.30	0.759375	8.5	3-10,2258-2251;12-19,2250-2243	1-2,2260-2259[UP5];11-11,x-x[BULq];20-21,2242-2241[UP3]	..((((((((-((((((((..&..)))))))).))))))))..	UUGGAAGGCG-AAGACGACGA&AUGUCGUUUUUCGUCUUCCUU	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2484_c0_g1_2251_TPlot.pdf
TRINITY_DN2484_c0_g1:2252	si_a496	TRINITY_DN2484_c0_g1	2242	2261	2252	-32.40	-24.30	0.75	9.5	4-11,2258-2251;13-20,2250-2243	1-3,2261-2259[UP5];12-12,x-x[BULq];21-21,2242-2242[UP3]	.((((((((-((((((((...&...)))))))).)))))))).	UGGAAGGCG-AAGACGACGAG&UAUGUCGUUUUUCGUCUUCCU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN2484_c0_g1_2252_TPlot.pdf
TRINITY_DN2484_c0_g1:2253	si_a495	TRINITY_DN2484_c0_g1	2243	2262	2253	-31.90	-23.90	0.749216300940439	9.5	5-12,2258-2251;14-21,2250-2243	1-4,2262-2259[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	GGAAGGCG-AAGACGACGAGG&AUAUGUCGUUUUUCGUCUUCC	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN2484_c0_g1_2253_TPlot.pdf
TRINITY_DN2484_c0_g1:2254	si_a494	TRINITY_DN2484_c0_g1	2244	2263	2254	-29.50	-20.80	0.705084745762712	11.5	6-13,2258-2251;15-21,2250-2244	1-5,2263-2259[UP5];14-14,x-x[BULq]	(((((((-((((((((.....&.....)))))))).)))))))	GAAGGCG-AAGACGACGAGGU&AAUAUGUCGUUUUUCGUCUUC	2	0.995968609530716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2484_c0_g1_2254_TPlot.pdf
TRINITY_DN2484_c0_g1:2263	si_a67	TRINITY_DN2484_c0_g1	2250	2272	2263	-27.20	-17.80	0.654411764705882	10	1-10,2272-2263;13-17,2260-2256;18-21,2253-2250	11-12,2262-2261[SIL];x-x,2255-2254[BULt]	((((..(((((..((((((((((&))))))))))..)))))--))))	GAAGACGACGAGGUGGAAGAGGU&GCUUCUUUCAAAUUGUU--UUUC	2	0.999999992200633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2484_c0_g1_2263_TPlot.pdf
TRINITY_DN2484_c0_g1:2275	si_s82	TRINITY_DN2484_c0_g1	2263	2285	2275	-28.90	-19.00	0.657439446366782	10	2-6,2284-2280;7-11,2278-2274;13-20,2271-2264	1-1,2285-2285[UP5];x-x,2279-2279[BULt];12-12,2273-2272[AILt];21-21,2263-2263[UP3]	.((((((((..(((((.(((((.&.)))))-)))))-.)))))))).	UGGAAGAGGUUAAGGAGGAGAAG&UUUCUU-UCCUU-UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2484_c0_g1_2275_TPlot.pdf
TRINITY_DN2484_c0_g1:2276	si_s81	TRINITY_DN2484_c0_g1	2264	2286	2276	-28.90	-20.70	0.716262975778547	8	1-7,2286-2280;8-12,2278-2274;14-21,2271-2264	x-x,2279-2279[BULt];13-13,2273-2272[AILt]	((((((((..(((((.(((((((&)))))))-)))))-.))))))))	GGAAGAGGUUAAGGAGGAGAAGA&UUUUCUU-UCCUU-UCUUCUUCU	2	0.999999999513952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2484_c0_g1_2276_TPlot.pdf
TRINITY_DN2484_c0_g1:2277	si_s80	TRINITY_DN2484_c0_g1	2265	2287	2277	-28.20	-20.50	0.726950354609929	6.5	1-8,2287-2280;9-13,2278-2274;15-21,2271-2265	x-x,2279-2279[BULt];14-14,2273-2272[AILt]	(((((((..(((((.((((((((&))))))))-)))))-.)))))))	GAAGAGGUUAAGGAGGAGAAGAA&UUUUUCUU-UCCUU-UCUUCUUC	2	0.999999987942851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2484_c0_g1_2277_TPlot.pdf
TRINITY_DN2484_c0_g1:2278	si_s79	TRINITY_DN2484_c0_g1	2266	2288	2278	-26.20	-18.00	0.687022900763359	6.5	1-9,2288-2280;10-14,2278-2274;16-21,2271-2266	x-x,2279-2279[BULt];15-15,2273-2272[AILt]	((((((..(((((.(((((((((&)))))))))-)))))-.))))))	AAGAGGUUAAGGAGGAGAAGAAA&UUUUUUCUU-UCCUU-UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2484_c0_g1_2278_TPlot.pdf
TRINITY_DN2484_c0_g1:2279	si_s77	TRINITY_DN2484_c0_g1	2265	2288	2279	-25.50	-16.70	0.654901960784314	9	1-11,2288-2278;13-16,2277-2274;17-21,2269-2265	12-12,x-x[BULq];x-x,2273-2270[BULt]	(((((....((((-(((((((((((&))))))))))).))))----)))))	GAAGAGGUUAAGG-AGGAGAAGAAA&UUUUUUUUCUUUCCUU----UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2484_c0_g1_2279_TPlot.pdf
TRINITY_DN2484_c0_g1:2280	si_s78	TRINITY_DN2484_c0_g1	2264	2289	2280	-26.20	-17.30	0.66030534351145	9.5	2-10,2288-2280;11-15,2278-2274;16-21,2269-2264	1-1,2289-2289[UP5];x-x,2279-2279[BULt];x-x,2273-2270[BULt]	((((((....(((((.(((((((((.&.)))))))))-)))))----))))))	GGAAGAGGUUAAGGAGGAGAAGAAAC&UUUUUUUCUU-UCCUU----UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2484_c0_g1_2280_TPlot.pdf
TRINITY_DN2484_c0_g1:2377	si_a497	TRINITY_DN2484_c0_g1	2365	2386	2377	-32.00	-20.90	0.653125	9.5	3-13,2384-2374;15-20,2371-2366	1-2,2386-2385[UP5];14-14,2373-2372[AILt];21-21,2365-2365[UP3]	.((((((..(((((((((((..&..)))))))))))-.)))))).	CAGGGGGUGUGAAGAACGGCGC&AUGUCGUUUUUCG-UCUUCCUU	2	0.999999999999653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2484_c0_g1_2377_TPlot.pdf
TRINITY_DN2484_c0_g1:2553	si_a349	TRINITY_DN2484_c0_g1	2543	2562	2553	-21.30	-14.40	0.676056338028169	3.5	1-10,2562-2553;12-20,2552-2544	11-11,x-x[BULq];21-21,2543-2543[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	GAAAAUAGAA-UAAUAUUUUU&GAAAAUAUUAAUUCUAUUUUG	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN2484_c0_g1_2553_TPlot.pdf
TRINITY_DN2484_c0_g1:2554	si_a348	TRINITY_DN2484_c0_g1	2544	2563	2554	-21.10	-13.90	0.658767772511848	4	2-11,2562-2553;13-21,2552-2544	1-1,2563-2563[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AAAAUAGAA-UAAUAUUUUUA&CGAAAAUAUUAAUUCUAUUUU	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN2484_c0_g1_2554_TPlot.pdf
TRINITY_DN2484_c0_g1:791	si_a64	TRINITY_DN2484_c0_g1	780	800	791	-29.40	-19.40	0.659863945578231	7	2-11,799-790;13-20,788-781	1-1,800-800[UP5];12-12,789-789[SIL];21-21,780-780[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	CAACAAUUUCAAGGAGGCGGU&CUCGCUUCUUUCAAAUUGUUU	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN2484_c0_g1_791_TPlot.pdf
TRINITY_DN24859_c0_g1:6159	si_a63	TRINITY_DN24859_c0_g1	6148	6168	6159	-30.20	-19.80	0.655629139072848	6	1-5,6168-6164;7-19,6162-6150	6-6,6163-6163[SIL];20-21,6149-6148[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UUCAAUUUGAAAGAAUUGGGU&ACUCGCUUCUUUCAAAUUGUU	4	0.999958677919561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN24859_c0_g1_6159_TPlot.pdf
TRINITY_DN24859_c0_g1:6576	si_a543	TRINITY_DN24859_c0_g1	6565	6586	6576	-28.70	-19.10	0.665505226480836	9	1-3,6586-6584;4-8,6582-6578;10-18,6576-6568	x-x,6583-6583[BULt];9-9,6577-6577[SIL];19-21,6567-6565[UP3]	...(((((((((.(((((.(((&)))-))))).)))))))))...	ACUGAGAUGGAUGGAGCCAGAU&AUC-GGUUCAAUCUAUUUCUUU	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN24859_c0_g1_6576_TPlot.pdf
TRINITY_DN24859_c0_g1:6579	si_a540	TRINITY_DN24859_c0_g1	6568	6590	6579	-34.00	-22.10	0.65	9	1-3,6590-6588;4-6,6586-6584;7-11,6582-6578;13-21,6576-6568	x-x,6587-6587[BULt];x-x,6583-6583[BULt];12-12,6577-6577[SIL]	(((((((((.(((((.(((.(((&)))-)))-))))).)))))))))	GAGAUGGAUGGAGCCAGAUAUGC&GCG-AUC-GGUUCAAUCUAUUUC	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a540_TRINITY_DN24859_c0_g1_6579_TPlot.pdf
TRINITY_DN24863_c0_g1:33	si_s76	TRINITY_DN24863_c0_g1	19	42	33	-23.60	-16.00	0.677966101694915	10	4-15,39-28;16-21,24-19	1-3,42-40[UP5];x-x,27-25[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	GGGAAACAUGGAAAGAAGAAAUAU&AUUUUUUUUCUUUCC---UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN24863_c0_g1_33_TPlot.pdf
TRINITY_DN2486_c0_g1:1088	si_s316	TRINITY_DN2486_c0_g1	1077	1097	1088	-31.50	-20.70	0.657142857142857	8	1-8,1097-1090;10-15,1088-1083;18-19,1080-1079	9-9,1089-1089[SIL];16-17,1082-1081[SIL];20-21,1078-1077[UP3]	..((..((((((.((((((((&)))))))).))))))..))..	AAUGGAGCAAGAUGGAUAGAG&UUCUGUCCUUCUUGUUACAAA	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN2486_c0_g1_1088_TPlot.pdf
TRINITY_DN2486_c0_g1:1764	si_a502	TRINITY_DN2486_c0_g1	1753	1774	1764	-32.10	-23.70	0.738317757009346	8.5	1-8,1774-1767;10-19,1764-1755	9-9,1766-1765[AILt];20-21,1754-1753[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	GGUCCAGGGAAGCUUGGAAAAC&GUUUUUCG-UCUUCCUUGGAAU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2486_c0_g1_1764_TPlot.pdf
TRINITY_DN2486_c0_g1:1765	si_a501	TRINITY_DN2486_c0_g1	1754	1775	1765	-33.50	-23.80	0.71044776119403	8.5	2-9,1774-1767;11-20,1764-1755	1-1,1775-1775[UP5];10-10,1766-1765[AILt];21-21,1754-1754[UP3]	.((((((((((..((((((((.&.))))))))-.)))))))))).	GUCCAGGGAAGCUUGGAAAACA&CGUUUUUCG-UCUUCCUUGGAA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2486_c0_g1_1765_TPlot.pdf
TRINITY_DN2486_c0_g1:1911	si_s1	TRINITY_DN2486_c0_g1	1901	1920	1911	-18.70	-12.90	0.689839572192513	7	2-10,1919-1911;12-20,1910-1902	1-1,1920-1920[UP5];11-11,x-x[BULq];21-21,1901-1901[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	AAAUAAUGGG-AAUGUAGAAG&UUUUUAUAUUACUUAUUAUUA	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN2486_c0_g1_1911_TPlot.pdf
TRINITY_DN2486_c0_g1:1914	si_a784	TRINITY_DN2486_c0_g1	1903	1923	1914	-24.70	-18.90	0.765182186234818	7	2-10,1922-1914;12-19,1912-1905	1-1,1923-1923[UP5];11-11,1913-1913[SIL];20-21,1904-1903[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	AUAAUGGGAAUGUAGAAGAGC&ACUCUUCUAUUUUUCUAUUUU	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2486_c0_g1_1914_TPlot.pdf
TRINITY_DN2486_c0_g1:1915	si_a783	TRINITY_DN2486_c0_g1	1904	1924	1915	-24.70	-18.90	0.765182186234818	8	3-11,1922-1914;13-20,1912-1905	1-2,1924-1923[UP5];12-12,1913-1913[SIL];21-21,1904-1904[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	UAAUGGGAAUGUAGAAGAGCA&AACUCUUCUAUUUUUCUAUUU	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2486_c0_g1_1915_TPlot.pdf
TRINITY_DN2486_c0_g1:1916	si_a782	TRINITY_DN2486_c0_g1	1905	1925	1916	-26.40	-18.90	0.715909090909091	8	4-12,1922-1914;14-21,1912-1905	1-3,1925-1923[UP5];13-13,1913-1913[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AAUGGGAAUGUAGAAGAGCAG&CAACUCUUCUAUUUUUCUAUU	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2486_c0_g1_1916_TPlot.pdf
TRINITY_DN2486_c0_g1:1917	si_a781	TRINITY_DN2486_c0_g1	1906	1926	1917	-27.40	-18.50	0.675182481751825	6.5	1-2,1926-1925;5-13,1922-1914;15-21,1912-1906	3-4,1924-1923[SIL];14-14,1913-1913[SIL]	(((((((.(((((((((..((&))..))))))))).)))))))	AUGGGAAUGUAGAAGAGCAGA&UCAACUCUUCUAUUUUUCUAU	2	0.997456340380309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN2486_c0_g1_1917_TPlot.pdf
TRINITY_DN2486_c0_g1:1919	si_a787	TRINITY_DN2486_c0_g1	1908	1935	1919	-26.30	-17.50	0.665399239543726	17.5	1-7,1935-1929;8-15,1921-1914;17-20,1912-1909	x-x,1928-1922[BULt];16-16,1913-1913[SIL];21-21,1908-1908[UP3]	.((((.((((((((.......(((((((&)))))))-------)))))))).)))).	GGGAAUGUAGAAGAGCAGACCAUAGAAG&CUUCUAU-------UUUUCUAUUUUCCA	3	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2486_c0_g1_1919_TPlot.pdf
TRINITY_DN2486_c0_g1:1920	si_a786	TRINITY_DN2486_c0_g1	1909	1936	1920	-26.60	-18.70	0.703007518796992	16.5	1-8,1936-1929;9-16,1921-1914;18-21,1912-1909	x-x,1928-1922[BULt];17-17,1913-1913[SIL]	((((.((((((((.......((((((((&))))))))-------)))))))).))))	GGAAUGUAGAAGAGCAGACCAUAGAAGA&UCUUCUAU-------UUUUCUAUUUUCC	3	0.999998883256769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2486_c0_g1_1920_TPlot.pdf
TRINITY_DN2486_c0_g1:2886	si_a779	TRINITY_DN2486_c0_g1	2875	2895	2886	-27.00	-17.60	0.651851851851852	8.5	3-5,2893-2891;7-19,2889-2877	1-2,2895-2894[UP5];6-6,2890-2890[SIL];20-21,2876-2875[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	GUGAAGAUGGAAGAGAUGACA&AUUCAACUCUUCUAUUUUUCU	4	0.9999999816632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN2486_c0_g1_2886_TPlot.pdf
TRINITY_DN2486_c0_g1:2888	si_a777	TRINITY_DN2486_c0_g1	2877	2897	2888	-27.00	-17.60	0.651851851851852	10.5	5-7,2893-2891;9-21,2889-2877	1-4,2897-2894[UP5];8-8,2890-2890[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GAAGAUGGAAGAGAUGACAAG&UGAUUCAACUCUUCUAUUUUU	2	0.999596841779756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2486_c0_g1_2888_TPlot.pdf
TRINITY_DN2486_c0_g1:2918	si_a192	TRINITY_DN2486_c0_g1	2907	2928	2918	-31.90	-23.30	0.730407523510972	9	1-9,2928-2920;10-16,2918-2912	x-x,2919-2919[BULt];17-21,2911-2907[UP3]	.....(((((((.(((((((((&)))))))))-))))))).....	AAGAAAGUGGGCAAGGGAAAGA&UCUUUCCCU-GUUCACUAAUAA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN2486_c0_g1_2918_TPlot.pdf
TRINITY_DN2486_c0_g1:2921	si_a190	TRINITY_DN2486_c0_g1	2909	2930	2921	-32.00	-23.30	0.728125	9	3-11,2928-2920;12-18,2918-2912	1-2,2930-2929[UP5];x-x,2919-2919[BULt];19-21,2911-2909[UP3]	...(((((((.(((((((((..&..)))))))))-)))))))...	GAAAGUGGGCAAGGGAAAGAAU&UAUCUUUCCCU-GUUCACUAAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN2486_c0_g1_2921_TPlot.pdf
TRINITY_DN2486_c0_g1:2923	si_a188	TRINITY_DN2486_c0_g1	2911	2932	2923	-32.00	-23.30	0.728125	10	5-13,2928-2920;14-20,2918-2912	1-4,2932-2929[UP5];x-x,2919-2919[BULt];21-21,2911-2911[UP3]	.(((((((.(((((((((....&....)))))))))-))))))).	AAGUGGGCAAGGGAAAGAAUAU&AAUAUCUUUCCCU-GUUCACUA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN2486_c0_g1_2923_TPlot.pdf
TRINITY_DN2486_c0_g1:4013	si_a809	TRINITY_DN2486_c0_g1	4002	4023	4013	-34.70	-23.10	0.665706051873199	7	1-4,4023-4020;6-16,4017-4007;18-20,4005-4003	5-5,4019-4018[AILt];17-17,4006-4006[SIL];21-21,4002-4002[UP3]	.(((.(((((((((((..((((&))))-.))))))))))).))).	CUUCCUCUUCUUCGCUAGUGGA&UCCG-AAGCGAAGAAGAAGAAA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN2486_c0_g1_4013_TPlot.pdf
TRINITY_DN2486_c0_g1:4014	si_a808	TRINITY_DN2486_c0_g1	4003	4024	4014	-34.90	-24.10	0.69054441260745	6	1-5,4024-4020;7-17,4017-4007;19-21,4005-4003	6-6,4019-4018[AILt];18-18,4006-4006[SIL]	(((.(((((((((((..(((((&)))))-.))))))))))).)))	UUCCUCUUCUUCGCUAGUGGAU&AUCCG-AAGCGAAGAAGAAGAA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN2486_c0_g1_4014_TPlot.pdf
TRINITY_DN2486_c0_g1:4015	si_a807	TRINITY_DN2486_c0_g1	4004	4025	4015	-34.80	-23.50	0.675287356321839	7	2-6,4024-4020;8-18,4017-4007;20-21,4005-4004	1-1,4025-4025[UP5];7-7,4019-4018[AILt];19-19,4006-4006[SIL]	((.(((((((((((..(((((.&.)))))-.))))))))))).))	UCCUCUUCUUCGCUAGUGGAUG&AAUCCG-AAGCGAAGAAGAAGA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a807_TRINITY_DN2486_c0_g1_4015_TPlot.pdf
TRINITY_DN2486_c0_g1:4090	si_s33	TRINITY_DN2486_c0_g1	4079	4101	4090	-24.10	-16.10	0.66804979253112	8.5	1-7,4101-4095;8-14,4092-4086;16-20,4084-4080	x-x,4094-4093[BULt];15-15,4085-4085[SIL];21-21,4079-4079[UP3]	.(((((.(((((((..(((((((&)))))))--))))))).))))).	UGUUGUGGAGGAUUUGUAGUUGC&GCAACUA--AAUCUUUAAUAAUU	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN2486_c0_g1_4090_TPlot.pdf
TRINITY_DN2486_c0_g1:582	si_s482	TRINITY_DN2486_c0_g1	571	591	582	-21.20	-16.30	0.768867924528302	7	1-15,591-577	16-21,576-571[UP3]	......(((((((((((((((&)))))))))))))))......	AAAAGCAAAUGAAUAUAGGAU&AUCCUAUAUUUAUUUAAAUAU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN2486_c0_g1_582_TPlot.pdf
TRINITY_DN24879_c0_g3:1218	si_a399	TRINITY_DN24879_c0_g3	1207	1227	1218	-22.60	-18.10	0.800884955752212	5	1-17,1227-1211;19-21,1209-1207	18-18,1210-1210[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	AUGUGCAAAGCAAUUUUGUAU&AUAUAGAAUUGUUUUGUUUAU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN24879_c0_g3_1218_TPlot.pdf
TRINITY_DN24879_c0_g3:1219	si_a398	TRINITY_DN24879_c0_g3	1208	1228	1219	-22.40	-17.70	0.790178571428571	7	2-18,1227-1211	1-1,1228-1228[UP5];19-21,1210-1208[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UGUGCAAAGCAAUUUUGUAUG&AAUAUAGAAUUGUUUUGUUUA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN24879_c0_g3_1219_TPlot.pdf
TRINITY_DN24879_c0_g3:1220	si_a397	TRINITY_DN24879_c0_g3	1209	1229	1220	-24.00	-17.70	0.7375	8	3-19,1227-1211	1-2,1229-1228[UP5];20-21,1210-1209[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GUGCAAAGCAAUUUUGUAUGA&GAAUAUAGAAUUGUUUUGUUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN24879_c0_g3_1220_TPlot.pdf
TRINITY_DN24879_c0_g3:1222	si_a395	TRINITY_DN24879_c0_g3	1211	1231	1222	-24.70	-17.70	0.716599190283401	10	5-21,1227-1211	1-4,1231-1228[UP5]	(((((((((((((((((....&....)))))))))))))))))	GCAAAGCAAUUUUGUAUGACG&AAGAAUAUAGAAUUGUUUUGU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN24879_c0_g3_1222_TPlot.pdf
TRINITY_DN24879_c0_g3:1229	si_a477	TRINITY_DN24879_c0_g3	1218	1238	1229	-21.50	-17.00	0.790697674418605	8	3-20,1236-1219	1-2,1238-1237[UP5];21-21,1218-1218[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AAUUUUGUAUGACGAUGAUCU&UAAUUAUUGUUAUAUAGAAUA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN24879_c0_g3_1229_TPlot.pdf
TRINITY_DN24879_c0_g3:1231	si_a475	TRINITY_DN24879_c0_g3	1220	1240	1231	-23.50	-15.50	0.659574468085106	10.5	5-21,1236-1220	1-4,1240-1237[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUGUAUGACGAUGAUCUGG&UGUAAUUAUUGUUAUAUAGAA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN24879_c0_g3_1231_TPlot.pdf
TRINITY_DN24879_c0_g3:231	si_a67	TRINITY_DN24879_c0_g3	222	242	231	-27.20	-17.80	0.654411764705882	8.5	1-6,242-237;7-11,234-230;14-21,229-222	x-x,236-235[BULt];12-13,x-x[BULq]	((((((((--(((((..((((((&))))))--)))))..))))))))	GAAAAGCA--UUGAACCAGGAGC&GCUUCU--UUCAAAUUGUUUUUC	2	0.999999997223997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN24879_c0_g3_231_TPlot.pdf
TRINITY_DN24879_c0_g3:346	si_a222	TRINITY_DN24879_c0_g3	334	355	346	-25.20	-18.70	0.742063492063492	10	5-11,351-345;12-21,343-334	1-4,355-352[UP5];x-x,344-344[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	AUUGUGGAAACCAUGAGUGCCA&UUAAACUCAUG-UUUCUAUAAU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN24879_c0_g3_346_TPlot.pdf
TRINITY_DN24879_c0_g3:347	si_a221	TRINITY_DN24879_c0_g3	335	356	347	-25.20	-17.60	0.698412698412698	12	6-12,351-345;13-21,343-335	1-5,356-352[UP5];x-x,344-344[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	UUGUGGAAACCAUGAGUGCCAU&AUUAAACUCAUG-UUUCUAUAA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN24879_c0_g3_347_TPlot.pdf
TRINITY_DN24879_c0_g3:991	si_a496	TRINITY_DN24879_c0_g3	980	1004	991	-32.40	-21.60	0.666666666666667	14	3-7,1002-998;8-21,993-980	1-2,1004-1003[UP5];x-x,997-994[BULt]	((((((((((((((....(((((..&..)))))----))))))))))))))	GGGAAGAUGAAGAAACAGUGACACA&UAUGUCG----UUUUUCGUCUUCCU	3	0.999999999908848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN24879_c0_g3_991_TPlot.pdf
TRINITY_DN24884_c0_g1:921	si_a788	TRINITY_DN24884_c0_g1	910	930	921	-24.80	-18.70	0.754032258064516	7.5	2-7,929-924;10-20,921-911	1-1,930-930[UP5];8-9,923-922[SIL];21-21,910-910[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	AUGGAAGAUAGGUUAAUAGAU&UUCUAUUUUUCUAUUUUCCAA	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN24884_c0_g1_921_TPlot.pdf
TRINITY_DN24887_c0_g2:1250	si_a34	TRINITY_DN24887_c0_g2	1238	1265	1250	-38.10	-25.50	0.669291338582677	16.5	2-9,1264-1257;10-13,1250-1247;14-21,1245-1238	1-1,1265-1265[UP5];x-x,1256-1251[BULt];x-x,1246-1246[BULt]	((((((((.((((......((((((((.&.))))))))------))))-))))))))	AGACCUGCUCGGUGCCGGCUUUAGAGCG&AGUUCUAAG------ACCG-GUAGGUCU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a34_TRINITY_DN24887_c0_g2_1250_TPlot.pdf
TRINITY_DN2488_c0_g1:3342	si_s85	TRINITY_DN2488_c0_g1	3331	3353	3342	-33.80	-26.70	0.789940828402367	10	1-9,3353-3345;11-21,3341-3331	10-10,3344-3342[AILt]	(((((((((((...(((((((((&)))))))))--.)))))))))))	GCGAGGAGGAGCUCGAAGGAGAG&CUUUCCUUU--CUUCUUCUUCGC	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2488_c0_g1_3342_TPlot.pdf
TRINITY_DN2488_c0_g1:4786	si_a873	TRINITY_DN2488_c0_g1	4775	4795	4786	-27.00	-17.70	0.655555555555556	13.5	5-9,4791-4787;11-20,4785-4776	1-4,4795-4792[UP5];10-10,4786-4786[SIL];21-21,4775-4775[UP3]	.((((((((((.(((((....&....))))).)))))))))).	CUGAUUGCGGCAGAGUCGGGA&UAAAGAUUUAGUUGCAAUCAA	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN2488_c0_g1_4786_TPlot.pdf
TRINITY_DN2488_c0_g1:5715	si_a605	TRINITY_DN2488_c0_g1	5705	5724	5715	-32.20	-21.40	0.664596273291925	9	4-14,5721-5711;16-19,5710-5707	1-3,5724-5722[UP5];15-15,x-x[BULq];20-21,5706-5705[UP3]	..((((-(((((((((((...&...))))))))))).))))..	UCUCGA-UGGGAUUGCGAUGG&UUUUCGCAAUUCCAAUCGACU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN2488_c0_g1_5715_TPlot.pdf
TRINITY_DN2488_c0_g1:5717	si_a603	TRINITY_DN2488_c0_g1	5707	5726	5717	-29.80	-22.00	0.738255033557047	6.5	2-4,5725-5723;6-16,5721-5711;18-21,5710-5707	1-1,5726-5726[UP5];5-5,5722-5722[SIL];17-17,x-x[BULq]	((((-(((((((((((.(((.&.))).))))))))))).))))	UCGA-UGGGAUUGCGAUGGUG&AAUUUUCGCAAUUCCAAUCGA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN2488_c0_g1_5717_TPlot.pdf
TRINITY_DN2488_c0_g1:6191	si_s94	TRINITY_DN2488_c0_g1	6180	6200	6191	-35.50	-24.50	0.690140845070423	7.5	1-14,6200-6187;16-17,6185-6184	15-15,6186-6186[SIL];18-21,6183-6180[UP3]	....((.((((((((((((((&)))))))))))))).))....	CUGACCAGAGCGGAGGAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2488_c0_g1_6191_TPlot.pdf
TRINITY_DN2488_c0_g1:6192	si_s93	TRINITY_DN2488_c0_g1	6181	6201	6192	-34.80	-26.10	0.75	6.5	1-15,6201-6187;17-18,6185-6184	16-16,6186-6186[SIL];19-21,6183-6181[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UGACCAGAGCGGAGGAGAAGA&UCUUCUUCUUCGCUUCGGAUU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2488_c0_g1_6192_TPlot.pdf
TRINITY_DN2488_c0_g1:6193	si_s92	TRINITY_DN2488_c0_g1	6182	6202	6193	-34.90	-26.80	0.767908309455587	5.5	1-16,6202-6187;18-19,6185-6184	17-17,6186-6186[SIL];20-21,6183-6182[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	GACCAGAGCGGAGGAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2488_c0_g1_6193_TPlot.pdf
TRINITY_DN2488_c0_g1:6196	si_s89	TRINITY_DN2488_c0_g1	6185	6206	6196	-35.30	-25.40	0.719546742209632	8	1-2,6206-6205;4-19,6202-6187	3-3,6204-6203[AILt];20-21,6186-6185[UP3]	..((((((((((((((((..((&))-.))))))))))))))))..	CAGAGCGGAGGAGAAGAAUUGG&CC-UUUCUUCUUCUUCGCUUCG	2	0.998016861159279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2488_c0_g1_6196_TPlot.pdf
TRINITY_DN2488_c0_g1:6197	si_s88	TRINITY_DN2488_c0_g1	6186	6207	6197	-34.80	-25.40	0.729885057471264	8	2-3,6206-6205;5-20,6202-6187	1-1,6207-6207[UP5];4-4,6204-6203[AILt];21-21,6186-6186[UP3]	.((((((((((((((((..((.&.))-.)))))))))))))))).	AGAGCGGAGGAGAAGAAUUGGC&UCC-UUUCUUCUUCUUCGCUUC	3	0.999837544122648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2488_c0_g1_6197_TPlot.pdf
TRINITY_DN2488_c0_g1:6198	si_s87	TRINITY_DN2488_c0_g1	6187	6208	6198	-32.90	-25.20	0.765957446808511	8.5	3-4,6206-6205;6-21,6202-6187	1-2,6208-6207[UP5];5-5,6204-6203[AILt]	((((((((((((((((..((..&..))-.))))))))))))))))	GAGCGGAGGAGAAGAAUUGGCU&UUCC-UUUCUUCUUCUUCGCUU	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2488_c0_g1_6198_TPlot.pdf
TRINITY_DN2488_c0_g1:6199	si_s86	TRINITY_DN2488_c0_g1	6188	6209	6199	-32.90	-24.10	0.732522796352584	10	4-5,6206-6205;7-21,6202-6188	1-3,6209-6207[UP5];6-6,6204-6203[AILt]	(((((((((((((((..((...&...))-.)))))))))))))))	AGCGGAGGAGAAGAAUUGGCUU&UUUCC-UUUCUUCUUCUUCGCU	3	0.999988774176646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2488_c0_g1_6199_TPlot.pdf
TRINITY_DN2488_c0_g1:6832	si_a758	TRINITY_DN2488_c0_g1	6821	6842	6832	-34.00	-22.60	0.664705882352941	10.5	1-8,6842-6835;11-20,6831-6822	9-10,6834-6832[AILt];21-21,6821-6821[UP3]	.((((((((((...((((((((&))))))))-..)))))))))).	UGAUCAGGAACAGAAGGGGAGG&CCUCCUUU-GGGUUUUUGAUUG	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2488_c0_g1_6832_TPlot.pdf
TRINITY_DN24892_c0_g1:13489	si_a756	TRINITY_DN24892_c0_g1	13478	13500	13489	-33.10	-23.50	0.709969788519637	10.5	3-9,13498-13492;10-21,13489-13478	1-2,13500-13499[UP5];x-x,13491-13490[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	AUUAGAAGCCUAUCGAGGAGGAG&AACCUCCUU--UGGGUUUUUGAU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN24892_c0_g1_13489_TPlot.pdf
TRINITY_DN24892_c0_g1:2619	si_s809	TRINITY_DN24892_c0_g1	2608	2628	2619	-28.50	-19.50	0.684210526315789	9	1-9,2628-2620;11-18,2618-2611	10-10,2619-2619[SIL];19-21,2610-2608[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUGAGGAGAAGAUGGCGAGGA&UCUUCGUUACCUUUUCUUAAU	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN24892_c0_g1_2619_TPlot.pdf
TRINITY_DN24892_c0_g1:2675	si_s808	TRINITY_DN24892_c0_g1	2664	2683	2675	-28.60	-18.70	0.653846153846154	10.5	2-8,2682-2676;10-17,2675-2668	1-1,2683-2683[UP5];9-9,x-x[BULq];18-21,2667-2664[UP3]	....((((((((-(((((((.&.))))))).))))))))....	GCCCGGGAGGGU-GCGAGGAA&AUCUUCGUUACCUUUUCUUAA	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN24892_c0_g1_2675_TPlot.pdf
TRINITY_DN24892_c0_g1:2686	si_a500	TRINITY_DN24892_c0_g1	2675	2696	2686	-34.40	-24.30	0.706395348837209	7.5	2-5,2695-2692;6-19,2690-2677;21-21,2675-2675	1-1,2696-2696[UP5];x-x,2691-2691[BULt];20-20,2676-2676[SIL]	(.((((((((((((((.((((.&.))))-)))))))))))))).)	UGCGAGGAAGGCGAGGCAACGC&UCGUU-UUUCGUCUUCCUUGGA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN24892_c0_g1_2686_TPlot.pdf
TRINITY_DN24892_c0_g1:2687	si_a499	TRINITY_DN24892_c0_g1	2676	2696	2687	-35.20	-24.70	0.701704545454545	8.5	1-1,2696-2696;3-6,2695-2692;7-20,2690-2677	2-2,x-x[BULq];x-x,2691-2691[BULt];21-21,2676-2676[UP3]	.((((((((((((((.((((-(&).))))-)))))))))))))).	GCGAGGAAGGCGAGGCAACG-C&GUCGUU-UUUCGUCUUCCUUGG	4	0.999958677919561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN24892_c0_g1_2687_TPlot.pdf
TRINITY_DN24892_c0_g1:2875	si_a636	TRINITY_DN24892_c0_g1	2864	2884	2875	-26.30	-17.40	0.661596958174905	12	3-17,2882-2868	1-2,2884-2883[UP5];18-21,2867-2864[UP3]	....(((((((((((((((..&..)))))))))))))))....	CACCGCUCGGGAGAAUCGGAG&UGUCGAUUUUUUUGAGUAAUA	2	0.999997455977433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN24892_c0_g1_2875_TPlot.pdf
TRINITY_DN24892_c0_g1:2876	si_a635	TRINITY_DN24892_c0_g1	2865	2885	2876	-26.10	-17.40	0.666666666666667	12.5	4-18,2882-2868	1-3,2885-2883[UP5];19-21,2867-2865[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACCGCUCGGGAGAAUCGGAGU&AUGUCGAUUUUUUUGAGUAAU	3	0.999999999616306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN24892_c0_g1_2876_TPlot.pdf
TRINITY_DN24892_c0_g1:2877	si_a634	TRINITY_DN24892_c0_g1	2866	2886	2877	-26.40	-17.70	0.670454545454545	9.5	1-3,2886-2884;5-19,2882-2868	4-4,2883-2883[SIL];20-21,2867-2866[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	CCGCUCGGGAGAAUCGGAGUG&UAUGUCGAUUUUUUUGAGUAA	2	0.999971897648932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN24892_c0_g1_2877_TPlot.pdf
TRINITY_DN24892_c0_g1:2878	si_a633	TRINITY_DN24892_c0_g1	2867	2887	2878	-26.40	-18.20	0.689393939393939	9.5	1-4,2887-2884;6-20,2882-2868	5-5,2883-2883[SIL];21-21,2867-2867[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CGCUCGGGAGAAUCGGAGUGG&UUAUGUCGAUUUUUUUGAGUA	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN24892_c0_g1_2878_TPlot.pdf
TRINITY_DN24892_c0_g1:2879	si_a632	TRINITY_DN24892_c0_g1	2868	2888	2879	-26.10	-18.00	0.689655172413793	9.5	2-5,2887-2884;7-21,2882-2868	1-1,2888-2888[UP5];6-6,2883-2883[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	GCUCGGGAGAAUCGGAGUGGC&AUUAUGUCGAUUUUUUUGAGU	2	0.99751887635167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN24892_c0_g1_2879_TPlot.pdf
TRINITY_DN24892_c0_g1:3053	si_a183	TRINITY_DN24892_c0_g1	3040	3062	3053	-30.10	-19.70	0.654485049833887	12.5	3-5,3060-3058;7-12,3056-3051;13-21,3048-3040	1-2,3062-3061[UP5];6-6,3057-3057[SIL];x-x,3050-3049[BULt]	(((((((((..((((((.(((..&..))).))))))--)))))))))	AACGGGGAAGCGGAUGUCGUCCG&UAGAUAAUAUCU--UUCCCUGUU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN24892_c0_g1_3053_TPlot.pdf
TRINITY_DN24892_c0_g1:3105	si_a302	TRINITY_DN24892_c0_g1	3094	3114	3105	-28.20	-19.60	0.695035460992908	12.5	6-13,3109-3102;15-20,3100-3095	1-5,3114-3110[UP5];14-14,3101-3101[SIL];21-21,3094-3094[UP3]	.((((((.((((((((.....&.....)))))))).)))))).	GAAAUCCUGGCGGAUCGAUGA&AAAAAGAUUCGCUUGGAUUUA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN24892_c0_g1_3105_TPlot.pdf
TRINITY_DN24892_c0_g1:6346	si_s116	TRINITY_DN24892_c0_g1	6335	6355	6346	-24.70	-16.50	0.668016194331984	8.5	4-16,6352-6340;18-21,6338-6335	1-3,6355-6353[UP5];17-17,6339-6339[SIL]	((((.(((((((((((((...&...))))))))))))).))))	ACUCCUCUGUUUUUUUGUCAC&AAAAUAGAAAAAUAGAAGAGU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN24892_c0_g1_6346_TPlot.pdf
TRINITY_DN24898_c0_g1:877	si_a405	TRINITY_DN24898_c0_g1	866	886	877	-19.80	-13.30	0.671717171717172	8.5	2-10,885-877;12-19,875-868	1-1,886-886[UP5];11-11,876-876[SIL];20-21,867-866[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	GCAGAUGUGGCCGAAACAAUG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN24898_c0_g1_877_TPlot.pdf
TRINITY_DN248_c0_g1:1950	si_s610	TRINITY_DN248_c0_g1	1939	1962	1950	-27.20	-19.30	0.709558823529412	14	1-5,1962-1958;9-20,1951-1940	6-8,1957-1952[AILt];21-21,1939-1939[UP3]	.((((((((((((......(((((&)))))---...)))))))))))).	AGCUUGGAUUUGAUAUAGUAGAUU&AAUCU---UUUUUAAAUCCAAGCG	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN248_c0_g1_1950_TPlot.pdf
TRINITY_DN24903_c0_g2:261	si_s87	TRINITY_DN24903_c0_g2	245	270	261	-32.90	-21.70	0.659574468085106	19	4-12,267-259;13-21,253-245	1-3,270-268[UP5];x-x,258-254[BULt]	(((((((((.....(((((((((...&...)))))))))-----)))))))))	GAGCGGAGAUGUCUGGAGGAGAGCUU&UUCCUUUCUUCU-----UCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN24903_c0_g2_261_TPlot.pdf
TRINITY_DN24903_c0_g2:590	si_a66	TRINITY_DN24903_c0_g2	579	599	590	-26.70	-18.70	0.700374531835206	6.5	2-12,598-588;14-15,586-585;17-21,583-579	1-1,599-599[UP5];13-13,587-587[SIL];16-16,584-584[SIL]	(((((.((.(((((((((((.&.))))))))))).)).)))))	GAGAAGGAAUUGAGGGAAGCC&CGCUUCUUUCAAAUUGUUUUU	2	0.999531899565299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN24903_c0_g2_590_TPlot.pdf
TRINITY_DN24903_c0_g2:633	si_a35	TRINITY_DN24903_c0_g2	622	642	633	-37.80	-25.20	0.666666666666667	8	1-4,642-639;7-14,636-629;17-20,626-623	5-6,638-637[SIL];15-16,628-627[SIL];21-21,622-622[UP3]	.((((..((((((((..((((&))))..))))))))..)))).	AGGGCAGACCGGUCUCCGAAC&GUUCUAAGACCGGUAGGUCUA	0	0.063905838960189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN24903_c0_g2_633_TPlot.pdf
TRINITY_DN24903_c0_g2:635	si_a33	TRINITY_DN24903_c0_g2	624	644	635	-37.80	-24.70	0.653439153439153	7.5	2-6,643-639;9-16,636-629;19-21,626-624	1-1,644-644[UP5];7-8,638-637[SIL];17-18,628-627[SIL]	(((..((((((((..(((((.&.)))))..))))))))..)))	GGCAGACCGGUCUCCGAACUC&UAGUUCUAAGACCGGUAGGUC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a33_TRINITY_DN24903_c0_g2_635_TPlot.pdf
TRINITY_DN24910_c0_g1:124	si_a838	TRINITY_DN24910_c0_g1	113	133	124	-26.50	-17.30	0.652830188679245	13	6-17,128-117;20-21,114-113	1-5,133-129[UP5];18-19,116-115[SIL]	((..((((((((((((.....&.....))))))))))))..))	GGGGAGCAGCUUUUAUAAAUA&AAAAAAUAGAAGUUGCUAACU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN24910_c0_g1_124_TPlot.pdf
TRINITY_DN24914_c0_g1:337	si_s71	TRINITY_DN24914_c0_g1	320	346	337	-25.70	-17.10	0.665369649805448	11.5	1-12,346-335;14-17,333-330;18-21,323-320	13-13,334-334[SIL];x-x,329-324[BULt]	((((......((((.((((((((((((&)))))))))))).))))------))))	GGGAGCCGAAGAGGUAAAGAGUGGAAG&CUUCUAUUUUUUUUCUU------UCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN24914_c0_g1_337_TPlot.pdf
TRINITY_DN24914_c0_g1:504	si_a781	TRINITY_DN24914_c0_g1	492	513	504	-27.40	-18.60	0.678832116788321	7.5	4-16,510-498;17-20,496-493	1-3,513-511[UP5];x-x,497-497[BULt];21-21,492-492[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	UUAGAUAAAGUAGAAGAGUCCA&UCAACUCUUCUAUUUU-UCUAU	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN24914_c0_g1_504_TPlot.pdf
TRINITY_DN24914_c0_g1:510	si_a320	TRINITY_DN24914_c0_g1	499	520	510	-24.40	-16.00	0.655737704918033	10.5	4-9,517-512;10-20,510-500	1-3,520-518[UP5];x-x,511-511[BULt];21-21,499-499[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	AAGUAGAAGAGUCCAUGGAAAA&UUAUCCAUG-AUUUUUUUAUUC	2	0.999991385308139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN24914_c0_g1_510_TPlot.pdf
TRINITY_DN24914_c0_g1:892	si_a761	TRINITY_DN24914_c0_g1	881	901	892	-30.10	-19.60	0.651162790697674	8.5	1-18,901-884	19-21,883-881[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAAUAGUCGAAAAUUCGGAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.999999999992029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN24914_c0_g1_892_TPlot.pdf
TRINITY_DN24914_c0_g1:893	si_a760	TRINITY_DN24914_c0_g1	882	902	893	-31.10	-21.00	0.67524115755627	7.5	1-19,902-884	20-21,883-882[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAUAGUCGAAAAUUCGGAGGA&UCCUUUGGGUUUUUGAUUGAU	2	0.999520101235378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN24914_c0_g1_893_TPlot.pdf
TRINITY_DN2491_c2_g1:1110	si_s779	TRINITY_DN2491_c2_g1	1099	1119	1110	-29.30	-21.20	0.723549488054608	8.5	1-11,1119-1109;14-17,1106-1103;19-21,1101-1099	12-13,1108-1107[SIL];18-18,1102-1102[SIL]	(((.((((..(((((((((((&)))))))))))..)))).)))	GGCAUGUUGGAUGGCGGUGGU&ACUAUUGCUAUAAAACAAGCU	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s779_TRINITY_DN2491_c2_g1_1110_TPlot.pdf
TRINITY_DN2491_c2_g1:1111	si_s778	TRINITY_DN2491_c2_g1	1100	1120	1111	-29.00	-20.80	0.717241379310345	7.5	1-12,1120-1109;15-18,1106-1103;20-21,1101-1100	13-14,1108-1107[SIL];19-19,1102-1102[SIL]	((.((((..((((((((((((&))))))))))))..)))).))	GCAUGUUGGAUGGCGGUGGUG&UACUAUUGCUAUAAAACAAGC	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s778_TRINITY_DN2491_c2_g1_1111_TPlot.pdf
TRINITY_DN2491_c2_g1:1112	si_s777	TRINITY_DN2491_c2_g1	1101	1121	1112	-26.60	-17.90	0.672932330827068	10	2-13,1120-1109;16-19,1106-1103	1-1,1121-1121[UP5];14-15,1108-1107[SIL];20-21,1102-1101[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	CAUGUUGGAUGGCGGUGGUGU&UUACUAUUGCUAUAAAACAAG	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN2491_c2_g1_1112_TPlot.pdf
TRINITY_DN2491_c3_g1:2514	si_s507	TRINITY_DN2491_c3_g1	2503	2524	2514	-22.70	-14.80	0.651982378854626	11.5	5-9,2520-2516;10-19,2514-2505	1-4,2524-2521[UP5];x-x,2515-2515[BULt];20-21,2504-2503[UP3]	..((((((((((.(((((....&....)))))-))))))))))..	AGGAGAAUAUAGAAAUUGAACA&AAAACAAUU-CUAUAUUCUUAA	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN2491_c3_g1_2514_TPlot.pdf
TRINITY_DN2491_c3_g1:3237	si_a140	TRINITY_DN2491_c3_g1	3226	3246	3237	-25.20	-16.70	0.662698412698413	6.5	1-6,3246-3241;9-20,3238-3227	7-8,3240-3239[SIL];21-21,3226-3226[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CAAGCAAUAACGACCAAUUAU&GUAAUUAAUCGUUGUUGUUUU	3	0.999999760239991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN2491_c3_g1_3237_TPlot.pdf
TRINITY_DN2491_c3_g1:3448	si_s199	TRINITY_DN2491_c3_g1	3437	3457	3448	-31.20	-20.70	0.663461538461538	13	7-8,3451-3450;10-21,3448-3437	1-6,3457-3452[UP5];9-9,3449-3449[SIL]	((((((((((((.((......&......)).))))))))))))	ACAACUGGUACACUCAUGAAC&AUUUUGGAAUGUACCAGUUGU	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN2491_c3_g1_3448_TPlot.pdf
TRINITY_DN2491_c3_g1:643	si_a784	TRINITY_DN2491_c3_g1	632	652	643	-24.70	-16.20	0.65587044534413	7.5	3-6,650-647;8-21,645-632	1-2,652-651[UP5];7-7,646-646[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GGAAUAGAGAAAUAAGAGAAC&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2491_c3_g1_643_TPlot.pdf
TRINITY_DN2491_c6_g1:167	si_a456	TRINITY_DN2491_c6_g1	156	176	167	-22.80	-16.20	0.710526315789474	6.5	2-4,175-173;6-21,171-156	1-1,176-176[UP5];5-5,172-172[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	UAUGUUAUGUAUGACAUUAAA&AUUGUUGUUAUAUAUAAUAUG	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN2491_c6_g1_167_TPlot.pdf
TRINITY_DN2491_c6_g1:169	si_a454	TRINITY_DN2491_c6_g1	158	178	169	-21.30	-14.10	0.661971830985915	10	4-6,175-173;8-21,171-158	1-3,178-176[UP5];7-7,172-172[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UGUUAUGUAUGACAUUAAAAA&UAAUUGUUGUUAUAUAUAAUA	2	0.999951406790964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN2491_c6_g1_169_TPlot.pdf
TRINITY_DN24922_c1_g1:1218	si_s76	TRINITY_DN24922_c1_g1	1207	1227	1218	-23.60	-15.60	0.661016949152542	12.5	5-11,1223-1217;13-20,1215-1208	1-4,1227-1224[UP5];12-12,1216-1216[SIL];21-21,1207-1207[UP3]	.((((((((.(((((((....&....))))))).)))))))).	UAGAAAGGGUAGAAGAGCUAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN24922_c1_g1_1218_TPlot.pdf
TRINITY_DN24922_c1_g1:690	si_s509	TRINITY_DN24922_c1_g1	679	698	690	-22.80	-15.10	0.662280701754386	4.5	1-4,698-695;6-9,693-690;11-21,689-679	5-5,694-694[SIL];10-10,x-x[BULq]	(((((((((((-((((.((((&)))).)))).)))))))))))	AGUUAAGAAUA-AGAAAUGUU&AACAAUUCUAUAUUCUUAAUU	2	0.988242631555895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN24922_c1_g1_690_TPlot.pdf
TRINITY_DN2492_c0_g1:368	si_a70	TRINITY_DN2492_c0_g1	355	377	368	-23.90	-15.90	0.665271966527197	7.5	1-11,377-367;13-17,365-361;18-21,358-355	12-12,366-366[SIL];x-x,360-359[BULt]	((((..(((((.(((((((((((&))))))))))).)))))--))))	GAUGCAGAGAAGAAUUUGGGAGA&UCUUUCAAAUUGUUUUU--CAUU	3	0.999999999951334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2492_c0_g1_368_TPlot.pdf
TRINITY_DN2492_c0_g1:369	si_a69	TRINITY_DN2492_c0_g1	358	378	369	-24.00	-15.80	0.658333333333333	7	1-12,378-367;14-18,365-361	13-13,366-366[SIL];19-21,360-358[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GCAGAGAAGAAUUUGGGAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999999768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2492_c0_g1_369_TPlot.pdf
TRINITY_DN2492_c0_g1:378	si_s69	TRINITY_DN2492_c0_g1	362	387	378	-23.40	-16.00	0.683760683760684	10	2-14,386-374;15-20,368-363	1-1,387-387[UP5];x-x,373-369[BULt];21-21,362-362[UP3]	.((((((.....(((((((((((((.&.)))))))))))))-----)))))).	AGAAGAAUUUGGGAGAAAUGGAAGUA&AACUUCUAUUUUUU-----UUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2492_c0_g1_378_TPlot.pdf
TRINITY_DN2492_c0_g1:379	si_s68	TRINITY_DN2492_c0_g1	363	388	379	-23.10	-15.80	0.683982683982684	10.5	3-15,386-374;16-21,368-363	1-2,388-387[UP5];x-x,373-369[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	GAAGAAUUUGGGAGAAAUGGAAGUAA&CAACUUCUAUUUUUU-----UUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2492_c0_g1_379_TPlot.pdf
TRINITY_DN2492_c0_g1:553	si_a154	TRINITY_DN2492_c0_g1	540	562	553	-27.00	-18.80	0.696296296296296	7.5	1-4,562-559;7-14,556-549;15-20,546-541	5-6,558-557[SIL];x-x,548-547[BULt];21-21,540-540[UP3]	.((((((..((((((((..((((&))))..))))))))--)))))).	UAUGGAUCAUGACCUUAUUACAA&UUGUUUUAAGGUCA--AUCUAUU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN2492_c0_g1_553_TPlot.pdf
TRINITY_DN2492_c0_g1:554	si_a153	TRINITY_DN2492_c0_g1	541	563	554	-28.70	-18.80	0.655052264808362	7.5	2-5,562-559;8-15,556-549;16-21,546-541	1-1,563-563[UP5];6-7,558-557[SIL];x-x,548-547[BULt]	((((((..((((((((..((((.&.))))..))))))))--))))))	AUGGAUCAUGACCUUAUUACAAG&GUUGUUUUAAGGUCA--AUCUAU	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN2492_c0_g1_554_TPlot.pdf
TRINITY_DN2492_c0_g1:604	si_a787	TRINITY_DN2492_c0_g1	593	617	604	-26.30	-17.40	0.661596958174905	14	1-8,617-610;9-19,605-595	x-x,609-606[BULt];20-21,594-593[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	AAGAGGGUGGAGAUUGGGAUAGAAG&CUUCUAUU----UUUCUAUUUUCCA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2492_c0_g1_604_TPlot.pdf
TRINITY_DN2492_c0_g1:605	si_a786	TRINITY_DN2492_c0_g1	594	618	605	-26.60	-19.00	0.714285714285714	13	1-9,618-610;10-20,605-595	x-x,609-606[BULt];21-21,594-594[UP3]	.(((((((((((....(((((((((&)))))))))----))))))))))).	AGAGGGUGGAGAUUGGGAUAGAAGA&UCUUCUAUU----UUUCUAUUUUCC	2	0.998651692302393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2492_c0_g1_605_TPlot.pdf
TRINITY_DN2492_c0_g1:606	si_s72	TRINITY_DN2492_c0_g1	595	616	606	-24.10	-16.30	0.676348547717842	10.5	1-9,616-608;11-15,605-601;17-21,599-595	10-10,607-606[AILt];16-16,600-600[SIL]	(((((.(((((..(((((((((&)))))))))-.))))).)))))	GAGGGUGGAGAUUGGGAUAGAA&UUCUAUUUU-UUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2492_c0_g1_606_TPlot.pdf
TRINITY_DN2492_c0_g1:612	si_s78	TRINITY_DN2492_c0_g1	600	621	612	-26.20	-17.10	0.652671755725191	8	2-9,620-613;11-14,611-608;16-20,605-601	1-1,621-621[UP5];10-10,612-612[SIL];15-15,607-606[AILt];21-21,600-600[UP3]	.(((((..((((.((((((((.&.)))))))).))))-.))))).	UGGAGAUUGGGAUAGAAGAAAU&UUUUUUUCUUUCCU-UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2492_c0_g1_612_TPlot.pdf
TRINITY_DN2492_c0_g1:854	si_s39	TRINITY_DN2492_c0_g1	843	863	854	-22.30	-14.50	0.650224215246637	8	2-13,862-851;16-17,848-847	1-1,863-863[UP5];14-15,850-849[SIL];18-21,846-843[UP3]	....((..((((((((((((.&.))))))))))))..))....	UGAACCUUUUGUUAAAGAUUA&AAAUCUUUAAUAAUUGGAUUU	3	0.999999914612344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN2492_c0_g1_854_TPlot.pdf
TRINITY_DN2493_c0_g1:675	si_s704	TRINITY_DN2493_c0_g1	664	684	675	-32.80	-21.40	0.652439024390244	9	2-13,683-672;16-17,669-668;19-21,666-664	1-1,684-684[UP5];14-15,671-670[SIL];18-18,667-667[SIL]	(((.((..((((((((((((.&.))))))))))))..)).)))	UCCGUGGGCGCUAAUGGGUUA&CGAUUUAUUAGUGAACAGGGA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s704_TRINITY_DN2493_c0_g1_675_TPlot.pdf
TRINITY_DN2493_c1_g1:2879	si_s470	TRINITY_DN2493_c1_g1	2866	2889	2879	-33.70	-22.50	0.667655786350148	7	1-3,2889-2887;5-9,2885-2881;10-13,2879-2876;14-21,2873-2866	4-4,2886-2886[SIL];x-x,2880-2880[BULt];x-x,2875-2874[BULt]	((((((((..((((.(((((.(((&))).)))))-))))--))))))))	GUAUGGGAAUUCCGAUUGGAAAUG&CAUAUCCAA-CGGA--UCCUAUAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s470_TRINITY_DN2493_c1_g1_2879_TPlot.pdf
TRINITY_DN2493_c1_g1:3447	si_s533	TRINITY_DN2493_c1_g1	3436	3455	3447	-28.80	-21.20	0.736111111111111	8	3-4,3453-3452;6-19,3451-3438	1-2,3455-3454[UP5];5-5,x-x[BULq];20-21,3437-3436[UP3]	..((((((((((((((-((..&..)).))))))))))))))..	UGGAUCGGAUCGAAAA-GAAU&AAUCAUUUUUGAUCCGAUCAA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN2493_c1_g1_3447_TPlot.pdf
TRINITY_DN2493_c1_g1:3589	si_a58	TRINITY_DN2493_c1_g1	3578	3599	3589	-34.60	-24.00	0.69364161849711	9.5	1-4,3599-3596;7-7,3593-3593;8-19,3591-3580	5-6,3595-3594[SIL];x-x,3592-3592[BULt];20-21,3579-3578[UP3]	..((((((((((((.(..((((&))))..)-))))))))))))..	AGUGAAGGAAGCGAUGGAGGCU&AGUCGAC-UCGCUUCUUUCAAA	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN2493_c1_g1_3589_TPlot.pdf
TRINITY_DN24941_c0_g2:884	si_a896	TRINITY_DN24941_c0_g2	873	893	884	-21.60	-14.30	0.662037037037037	5.5	1-6,893-888;9-20,885-874	7-8,887-886[SIL];21-21,873-873[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	GUAUAUUAUUUAUAUUUACUA&UAGUAAUAAUAAGUAAUAUAA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN24941_c0_g2_884_TPlot.pdf
TRINITY_DN2494_c0_g1:3958	si_a425	TRINITY_DN2494_c0_g1	3956	3967	3958	-30.80	-21.40	0.694805194805195	3	11-21,3966-3956	10-10,3967-3967[SIL]	(((((((((((.&.)))))))))))	CCAGCGGAUCCG&AAUAAAUAUAGG	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN2494_c0_g1_3958_TPlot.pdf
TRINITY_DN2494_c0_g1:3962	si_a430	TRINITY_DN2494_c0_g1	3951	3971	3962	-33.70	-22.20	0.658753709198813	14.5	6-16,3966-3956	1-5,3971-3967[UP5];17-21,3955-3951[UP3]	.....(((((((((((.....&.....))))))))))).....	GGUUCCCAGCGGAUCCGCCUC&AUAUAGGAUCCGUUGGAUAUG	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN2494_c0_g1_3962_TPlot.pdf
TRINITY_DN2494_c0_g1:3963	si_a429	TRINITY_DN2494_c0_g1	3952	3972	3963	-32.00	-22.20	0.69375	15.5	7-17,3966-3956	1-6,3972-3967[UP5];18-21,3955-3952[UP3]	....(((((((((((......&......)))))))))))....	GUUCCCAGCGGAUCCGCCUCU&AAUAUAGGAUCCGUUGGAUAU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN2494_c0_g1_3963_TPlot.pdf
TRINITY_DN2494_c0_g1:6035	si_a77	TRINITY_DN2494_c0_g1	6025	6044	6035	-22.20	-15.30	0.689189189189189	6.5	2-10,6043-6035;12-20,6034-6026	1-1,6044-6044[UP5];11-11,x-x[BULq];21-21,6025-6025[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	CCUUGAUAAU-AGAGACAAUG&AAUUGUUUUUCAUUAUUAAGA	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN2494_c0_g1_6035_TPlot.pdf
TRINITY_DN2494_c0_g1:6297	si_a510	TRINITY_DN2494_c0_g1	6285	6306	6297	-37.00	-24.10	0.651351351351351	5.5	2-13,6305-6294;15-17,6292-6290;18-21,6288-6285	1-1,6306-6306[UP5];14-14,6293-6293[SIL];x-x,6289-6289[BULt]	((((.(((.((((((((((((.&.)))))))))))).)))-))))	UGCCUUUAGAUUUCAAGGAGGC&UCUUCCUUGGAAUGUAA-GGCG	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN2494_c0_g1_6297_TPlot.pdf
TRINITY_DN24954_c0_g3:1239	si_s628	TRINITY_DN24954_c0_g3	1225	1248	1239	-35.40	-24.22	0.684180790960452	10	1-13,1248-1236;16-21,1230-1225	14-15,1235-1231[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	GGACGCAGAGAGCGAGAGGGUCGU&GCGAUCUUUUCGU---AGGCGUUU	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN24954_c0_g3_1239_TPlot.pdf
TRINITY_DN24954_c0_g3:1240	si_s627	TRINITY_DN24954_c0_g3	1226	1249	1240	-36.10	-23.92	0.662603878116343	11	2-14,1248-1236;17-21,1230-1226	1-1,1249-1249[UP5];15-16,1235-1231[AILt]	(((((.....(((((((((((((.&.)))))))))))))---..)))))	GACGCAGAGAGCGAGAGGGUCGUG&AGCGAUCUUUUCGU---AGGCGUU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN24954_c0_g3_1240_TPlot.pdf
TRINITY_DN24954_c0_g3:4015	si_s214	TRINITY_DN24954_c0_g3	4003	4024	4015	-37.10	-24.40	0.657681940700809	7.5	1-10,4024-4015;11-16,4013-4008;18-20,4006-4004	x-x,4014-4014[BULt];17-17,4007-4007[SIL];21-21,4003-4003[UP3]	.(((.((((((.((((((((((&))))))))))-)))))).))).	GGCGAGGUUUUGGAACGCAGCU&AGUUGUGUUC-GAAACCGCGUG	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s214_TRINITY_DN24954_c0_g3_4015_TPlot.pdf
TRINITY_DN24954_c0_g3:4160	si_a784	TRINITY_DN24954_c0_g3	4147	4169	4160	-24.70	-17.30	0.700404858299595	13	1-10,4169-4160;11-19,4157-4149	x-x,4159-4158[BULt];20-21,4148-4147[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	CUGGUGGAGGAAUGUGGAGGGGU&ACUCUUCUAU--UUUUCUAUUUU	3	0.999999998807864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN24954_c0_g3_4160_TPlot.pdf
TRINITY_DN24954_c0_g3:4161	si_a783	TRINITY_DN24954_c0_g3	4148	4170	4161	-24.70	-17.50	0.708502024291498	12.5	2-11,4169-4160;12-20,4157-4149	1-1,4170-4170[UP5];x-x,4159-4158[BULt];21-21,4148-4148[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	UGGUGGAGGAAUGUGGAGGGGUC&AACUCUUCUAU--UUUUCUAUUU	4	0.999999618795197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN24954_c0_g3_4161_TPlot.pdf
TRINITY_DN2495_c0_g1:316	si_a674	TRINITY_DN2495_c0_g1	306	327	316	-34.70	-25.70	0.740634005763689	7.5	1-3,327-325;4-13,322-313;15-21,312-306	x-x,324-323[BULt];14-14,x-x[BULq]	(((((((-((((((((((..(((&)))--)))))))))).)))))))	AGCCGCG-GAAUGAGGGAGUUCA&UGA--UUCCUUAUUCACGCGGUU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN2495_c0_g1_316_TPlot.pdf
TRINITY_DN2495_c0_g1:70	si_s72	TRINITY_DN2495_c0_g1	59	79	70	-24.10	-16.40	0.680497925311203	6	1-17,79-63	18-21,62-59[UP3]	....(((((((((((((((((&)))))))))))))))))....	GACAAAAGAAGAAAAAUAGGA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2495_c0_g1_70_TPlot.pdf
TRINITY_DN2495_c0_g1:753	si_a835	TRINITY_DN2495_c0_g1	742	762	753	-26.00	-17.50	0.673076923076923	5	1-11,762-752;13-20,750-743	12-12,751-751[SIL];21-21,742-742[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	GAGUGGCUUGUAUUUUUUUUU&GAAAAAAAAUAGAAGUUGCUA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN2495_c0_g1_753_TPlot.pdf
TRINITY_DN2495_c0_g1:754	si_a834	TRINITY_DN2495_c0_g1	743	763	754	-26.30	-18.00	0.684410646387833	3.5	1-12,763-752;14-21,750-743	13-13,751-751[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGUGGCUUGUAUUUUUUUUUU&AGAAAAAAAAUAGAAGUUGCU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a834_TRINITY_DN2495_c0_g1_754_TPlot.pdf
TRINITY_DN2495_c0_g1:755	si_a833	TRINITY_DN2495_c0_g1	744	764	755	-25.60	-16.90	0.66015625	4.5	2-13,763-752;15-21,750-744	1-1,764-764[UP5];14-14,751-751[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GUGGCUUGUAUUUUUUUUUUA&AAGAAAAAAAAUAGAAGUUGC	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN2495_c0_g1_755_TPlot.pdf
TRINITY_DN24961_c0_g1:995	si_a351	TRINITY_DN24961_c0_g1	984	1004	995	-20.50	-13.90	0.678048780487805	15.5	9-21,996-984	1-8,1004-997[UP5]	(((((((((((((........&........)))))))))))))	AUCAGAAUAGAAUAUACUCAC&AAAUAUUAAUUCUAUUUUGAU	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN24961_c0_g1_995_TPlot.pdf
TRINITY_DN24962_c0_g3:3953	si_a410	TRINITY_DN24962_c0_g3	3939	3962	3953	-17.80	-13.20	0.741573033707865	11.5	1-10,3962-3953;11-21,3949-3939	x-x,3952-3950[BULt]	(((((((((((...((((((((((&))))))))))---)))))))))))	UUUGUUUGAGUGGCGUAGACAAGG&UUUUGUUUAU---AUUUAAAUAAA	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN24962_c0_g3_3953_TPlot.pdf
TRINITY_DN24966_c0_g1:1095	si_a397	TRINITY_DN24966_c0_g1	1084	1104	1095	-24.00	-15.60	0.65	8.5	1-3,1104-1102;5-8,1100-1097;10-20,1095-1085	4-4,1101-1101[SIL];9-9,1096-1096[SIL];21-21,1084-1084[UP3]	.(((((((((((.((((.(((&))).)))).))))))))))).	CAACAAGACGGUCCUGUCUUC&GAAUAUAGAAUUGUUUUGUUU	4	0.999999676823731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN24966_c0_g1_1095_TPlot.pdf
TRINITY_DN24966_c0_g1:1310	si_s77	TRINITY_DN24966_c0_g1	1296	1320	1310	-25.50	-16.60	0.650980392156863	11	1-4,1320-1317;6-17,1314-1303;18-21,1299-1296	5-5,1316-1315[AILt];x-x,1302-1300[BULt]	((((...((((((((((((..((((&))))-.))))))))))))---))))	GGAGCCUAGAGGAAAGAGAUCGAGA&UUUU-UUUUCUUUCCUUU---CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN24966_c0_g1_1310_TPlot.pdf
TRINITY_DN24966_c0_g1:1314	si_s68	TRINITY_DN24966_c0_g1	1303	1325	1314	-23.10	-15.20	0.658008658008658	10.5	3-8,1323-1318;9-21,1315-1303	1-2,1325-1324[UP5];x-x,1317-1316[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	AGAGGAAAGAGAUCGAGAGGUCA&CAACUUCU--AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN24966_c0_g1_1314_TPlot.pdf
TRINITY_DN24966_c0_g1:141	si_s106	TRINITY_DN24966_c0_g1	130	150	141	-28.60	-19.00	0.664335664335664	9	4-9,147-142;11-19,140-132	1-3,150-148[UP5];10-10,141-141[SIL];20-21,131-130[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	GGUUCUAUUUUGCAAUCCCUU&UUCGGAUUGGAAAAUAGAAAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s106_TRINITY_DN24966_c0_g1_141_TPlot.pdf
TRINITY_DN24966_c0_g1:1480	si_s85	TRINITY_DN24966_c0_g1	1470	1489	1480	-33.80	-22.20	0.656804733727811	7	1-9,1489-1481;11-18,1479-1472;20-21,1471-1470	10-10,1480-1480[SIL];19-19,x-x[BULq]	((-((((((((.(((((((((&))))))))).)))))))).))	GC-AGGAGGAACGAGGGAAGG&CUUUCCUUUCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN24966_c0_g1_1480_TPlot.pdf
TRINITY_DN24966_c0_g1:1484	si_s81	TRINITY_DN24966_c0_g1	1473	1493	1484	-28.90	-20.40	0.705882352941176	9.5	4-13,1490-1481;15-21,1479-1473	1-3,1493-1491[UP5];14-14,1480-1480[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GGAGGAACGAGGGAAGGACCG&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN24966_c0_g1_1484_TPlot.pdf
TRINITY_DN24966_c0_g1:1485	si_s79	TRINITY_DN24966_c0_g1	1472	1494	1485	-26.20	-17.90	0.683206106870229	12.5	5-14,1490-1481;15-21,1478-1472	1-4,1494-1491[UP5];x-x,1480-1479[BULt]	(((((((..((((((((((....&....))))))))))--)))))))	AGGAGGAACGAGGGAAGGACCGG&UUUUUUCUUUCCUU--UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN24966_c0_g1_1485_TPlot.pdf
TRINITY_DN24974_c0_g1:2809	si_s74	TRINITY_DN24974_c0_g1	2798	2818	2809	-25.00	-20.20	0.808	5	1-8,2818-2811;10-20,2809-2799	9-9,2810-2810[SIL];21-21,2798-2798[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	CAAAGGAAAGAAUAAAAGUGG&CUAUUUUUUUUCUUUCCUUUC	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN24974_c0_g1_2809_TPlot.pdf
TRINITY_DN24981_c0_g1:1945	si_s318	TRINITY_DN24981_c0_g1	1935	1954	1945	-32.80	-21.60	0.658536585365854	8.5	1-14,1954-1941;16-18,1940-1938	15-15,x-x[BULq];19-21,1937-1935[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	AACUUG-AGCAAGGGGGGCGG&CUGUCCUUCUUGUUACAAACA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN24981_c0_g1_1945_TPlot.pdf
TRINITY_DN24981_c0_g1:1946	si_s317	TRINITY_DN24981_c0_g1	1936	1955	1946	-33.10	-21.60	0.652567975830816	8.5	2-15,1954-1941;17-19,1940-1938	1-1,1955-1955[UP5];16-16,x-x[BULq];20-21,1937-1936[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	ACUUG-AGCAAGGGGGGCGGC&UCUGUCCUUCUUGUUACAAAC	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN24981_c0_g1_1946_TPlot.pdf
TRINITY_DN24981_c0_g1:1947	si_s316	TRINITY_DN24981_c0_g1	1937	1956	1947	-31.50	-21.60	0.685714285714286	9.5	3-16,1954-1941;18-20,1940-1938	1-2,1956-1955[UP5];17-17,x-x[BULq];21-21,1937-1937[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	CUUG-AGCAAGGGGGGCGGCG&UUCUGUCCUUCUUGUUACAAA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN24981_c0_g1_1947_TPlot.pdf
TRINITY_DN24981_c0_g1:3230	si_a359	TRINITY_DN24981_c0_g1	3219	3239	3230	-29.20	-19.30	0.660958904109589	8.5	1-15,3239-3225	16-21,3224-3219[UP3]	......(((((((((((((((&)))))))))))))))......	GCAAGACGGUCAGAGUAGAAU&AUUCUAUUUUGAUCGGAUCAA	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN24981_c0_g1_3230_TPlot.pdf
TRINITY_DN24981_c0_g1:3233	si_a356	TRINITY_DN24981_c0_g1	3222	3242	3233	-26.90	-19.50	0.724907063197026	10.5	4-18,3239-3225	1-3,3242-3240[UP5];19-21,3224-3222[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGACGGUCAGAGUAGAAUAUG&UUAAUUCUAUUUUGAUCGGAU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN24981_c0_g1_3233_TPlot.pdf
TRINITY_DN24981_c0_g1:3236	si_a353	TRINITY_DN24981_c0_g1	3225	3245	3236	-24.00	-19.00	0.791666666666667	12.5	7-21,3239-3225	1-6,3245-3240[UP5]	(((((((((((((((......&......)))))))))))))))	CGGUCAGAGUAGAAUAUGUGA&AUAUUAAUUCUAUUUUGAUCG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN24981_c0_g1_3236_TPlot.pdf
TRINITY_DN24981_c0_g1:3237	si_a352	TRINITY_DN24981_c0_g1	3226	3246	3237	-22.50	-16.60	0.737777777777778	14.5	8-21,3239-3226	1-7,3246-3240[UP5]	((((((((((((((.......&.......))))))))))))))	GGUCAGAGUAGAAUAUGUGAC&AAUAUUAAUUCUAUUUUGAUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN24981_c0_g1_3237_TPlot.pdf
TRINITY_DN24981_c0_g1:3238	si_a351	TRINITY_DN24981_c0_g1	3227	3247	3238	-20.50	-14.20	0.692682926829268	16.5	9-21,3239-3227	1-8,3247-3240[UP5]	(((((((((((((........&........)))))))))))))	GUCAGAGUAGAAUAUGUGACA&AAAUAUUAAUUCUAUUUUGAU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN24981_c0_g1_3238_TPlot.pdf
TRINITY_DN24981_c0_g1:3372	si_a505	TRINITY_DN24981_c0_g1	3357	3381	3372	-33.30	-22.00	0.660660660660661	9	1-7,3381-3375;9-16,3373-3366;17-21,3361-3357	8-8,3374-3374[SIL];x-x,3365-3362[BULt]	(((((....((((((((.(((((((&))))))).))))))))----)))))	UACGUGAGGUCCGAGGACGAUGGAA&UUUCGUCUUCCUUGGA----AUGUA	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN24981_c0_g1_3372_TPlot.pdf
TRINITY_DN24981_c0_g1:4093	si_s634	TRINITY_DN24981_c0_g1	4081	4103	4093	-38.30	-25.42	0.663707571801567	12.5	1-5,4103-4099;9-17,4094-4086;18-21,4084-4081	6-8,4098-4095[AILt];x-x,4085-4085[BULt]	((((.(((((((((....(((((&)))))-...)))))))))-))))	GAGGAGCAAGCGCCGCCAGGGGA&UUUUC-GUAGGCGUUUGC-CCUC	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN24981_c0_g1_4093_TPlot.pdf
TRINITY_DN24981_c0_g1:4383	si_a791	TRINITY_DN24981_c0_g1	4371	4392	4383	-26.50	-17.80	0.671698113207547	5.5	1-7,4392-4386;9-17,4384-4376;18-21,4374-4371	8-8,4385-4385[SIL];x-x,4375-4375[BULt]	((((.(((((((((.(((((((&))))))).)))))))))-))))	GGAUCUGGAAAAUACAGAGAUG&UAUUUUUCUAUUUUCCA-AUCC	2	0.999421598995741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN24981_c0_g1_4383_TPlot.pdf
TRINITY_DN24981_c0_g1:7283	si_a427	TRINITY_DN24981_c0_g1	7272	7292	7283	-31.80	-20.70	0.650943396226415	19	10-21,7283-7272	1-9,7292-7284[UP5]	((((((((((((.........&.........))))))))))))	GUCCGACGGGUCGGAGGGAAG&UAAAUAUAGGAUCCGUUGGAU	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN24981_c0_g1_7283_TPlot.pdf
TRINITY_DN24986_c0_g1:53	si_a20	TRINITY_DN24986_c0_g1	42	62	53	-26.70	-18.40	0.689138576779026	6.5	1-4,62-59;6-18,57-45	5-5,58-58[SIL];19-21,44-42[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	ACCAACUGAAGAUAAAGAGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN24986_c0_g1_53_TPlot.pdf
TRINITY_DN24986_c0_g1:56	si_a17	TRINITY_DN24986_c0_g1	45	65	56	-24.30	-20.10	0.827160493827161	6	3-7,63-59;9-21,57-45	1-2,65-64[UP5];8-8,58-58[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AACUGAAGAUAAAGAGGCUGU&AAAGCCUAUUUAUUUUUAGUU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN24986_c0_g1_56_TPlot.pdf
TRINITY_DN24986_c0_g1:57	si_a16	TRINITY_DN24986_c0_g1	46	66	57	-26.30	-20.20	0.768060836501901	5	1-2,66-65;4-8,63-59;10-21,57-46	3-3,64-64[SIL];9-9,58-58[SIL]	((((((((((((.(((((.((&)).))))).))))))))))))	ACUGAAGAUAAAGAGGCUGUC&GAAAGCCUAUUUAUUUUUAGU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN24986_c0_g1_57_TPlot.pdf
TRINITY_DN24986_c0_g1:60	si_a13	TRINITY_DN24986_c0_g1	49	69	60	-26.80	-19.20	0.716417910447761	6	2-5,68-65;7-11,63-59;13-21,57-49	1-1,69-69[UP5];6-6,64-64[SIL];12-12,58-58[SIL]	(((((((((.(((((.((((.&.)))).))))).)))))))))	GAAGAUAAAGAGGCUGUCUCC&AGAGAAAGCCUAUUUAUUUUU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN24986_c0_g1_60_TPlot.pdf
TRINITY_DN24987_c0_g1:786	si_a825	TRINITY_DN24987_c0_g1	775	795	786	-24.00	-18.20	0.758333333333333	3	2-16,794-780;18-21,778-775	1-1,795-795[UP5];17-17,779-779[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	UAUUCUUUUUUUUUCCUUUCA&AGAAAGGAAAGAAAAAAAAUA	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a825_TRINITY_DN24987_c0_g1_786_TPlot.pdf
TRINITY_DN24997_c0_g1:395	si_a577	TRINITY_DN24997_c0_g1	384	404	395	-30.10	-20.20	0.67109634551495	9	3-15,402-390;17-19,388-386	1-2,404-403[UP5];16-16,389-389[SIL];20-21,385-384[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UCUCUGGUUGCAGGCAUACAU&UCGUAUGUUUGUAACAAGAAG	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a577_TRINITY_DN24997_c0_g1_395_TPlot.pdf
TRINITY_DN24997_c0_g1:502	si_a791	TRINITY_DN24997_c0_g1	491	511	502	-26.50	-22.50	0.849056603773585	11	6-21,506-491	1-5,511-507[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAUUGGAAAGUAGAGUGUUC&UAUUUUUCUAUUUUCCAAUCC	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN24997_c0_g1_502_TPlot.pdf
TRINITY_DN24998_c0_g1:898	si_s439	TRINITY_DN24998_c0_g1	884	907	898	-21.50	-14.10	0.655813953488372	8	1-11,907-897;12-18,895-889;19-21,886-884	x-x,896-896[BULt];x-x,888-887[BULt]	(((..(((((((.(((((((((((&)))))))))))-)))))))--)))	UGUCAUGUGUAUAGAUAUGUGGUU&AAUUACAUAUU-AUAUAUA--ACA	2	0.992763914805312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN24998_c0_g1_898_TPlot.pdf
TRINITY_DN24998_c0_g1:900	si_s437	TRINITY_DN24998_c0_g1	888	909	900	-19.70	-15.10	0.766497461928934	6.5	2-13,908-897;14-20,895-889	1-1,909-909[UP5];x-x,896-896[BULt];21-21,888-888[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	AUGUGUAUAGAUAUGUGGUUAG&AUAAUUACAUAUU-AUAUAUAA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN24998_c0_g1_900_TPlot.pdf
TRINITY_DN249_c0_g1:783	si_a577	TRINITY_DN249_c0_g1	771	792	783	-30.10	-20.10	0.667774086378738	5	1-10,792-783;11-14,781-778;16-21,776-771	x-x,782-782[BULt];15-15,777-777[SIL]	((((((.((((.((((((((((&))))))))))-)))).))))))	CUUCUUUUUACAAGACAUAUGA&UCGUAUGUUU-GUAACAAGAAG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a577_TRINITY_DN249_c0_g1_783_TPlot.pdf
TRINITY_DN249_c0_g1:95	si_a415	TRINITY_DN249_c0_g1	84	105	95	-18.10	-12.00	0.662983425414365	5	1-8,105-98;10-20,95-85	9-9,97-96[AILt];21-21,84-84[UP3]	.(((((((((((..((((((((&))))))))-.))))))))))).	UUAUAUUUAUUUCUAAUAUAAA&UUUAUAUU-UAAAUAAAUAUAG	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN249_c0_g1_95_TPlot.pdf
TRINITY_DN24_c0_g1:2357	si_a323	TRINITY_DN24_c0_g1	2346	2366	2357	-26.80	-18.90	0.705223880597015	6	1-16,2366-2351;19-21,2348-2346	17-18,2350-2349[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	AAGAUGUGGAAGAGUCAUGGG&UCCAUGAUUUUUUUAUUCCUU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN24_c0_g1_2357_TPlot.pdf
TRINITY_DN24_c0_g1:4375	si_s628	TRINITY_DN24_c0_g1	4364	4385	4375	-35.40	-24.50	0.692090395480226	8	1-2,4385-4384;4-8,4382-4378;10-13,4375-4372;15-21,4370-4364	3-3,4383-4383[SIL];9-9,4377-4376[AILt];14-14,4371-4371[SIL]	(((((((.((((..(((((.((&)).)))))-.)))).)))))))	GGACGCCCACGAUUAAGAUGGC&GCGAUCUU-UUCGUAGGCGUUU	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN24_c0_g1_4375_TPlot.pdf
TRINITY_DN24_c0_g2:2280	si_s796	TRINITY_DN24_c0_g2	2269	2289	2280	-30.30	-20.20	0.666666666666667	9	3-12,2287-2278;14-21,2276-2269	1-2,2289-2288[UP5];13-13,2277-2277[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GACGAAGGAGAGAUAUGGGGU&AGCUCGUAUUUUAUCUUCGUU	4	0.999994304191659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN24_c0_g2_2280_TPlot.pdf
TRINITY_DN24_c0_g2:2281	si_s795	TRINITY_DN24_c0_g2	2270	2290	2281	-30.30	-20.00	0.66006600660066	7	1-2,2290-2289;4-13,2287-2278;15-21,2276-2270	3-3,2288-2288[SIL];14-14,2277-2277[SIL]	(((((((.((((((((((.((&)).)))))))))).)))))))	ACGAAGGAGAGAUAUGGGGUU&AAGCUCGUAUUUUAUCUUCGU	3	0.999993884044885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN24_c0_g2_2281_TPlot.pdf
TRINITY_DN24_c0_g2:4588	si_s82	TRINITY_DN24_c0_g2	4577	4597	4588	-28.90	-20.60	0.71280276816609	10	5-6,4593-4592;8-21,4590-4577	1-4,4597-4594[UP5];7-7,4591-4591[SIL]	((((((((((((((.((....&....)).))))))))))))))	AAGAAGAAGAAAGGUGAAUGU&UUUCUUUCCUUUCUUCUUCUU	2	0.999999999845335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN24_c0_g2_4588_TPlot.pdf
TRINITY_DN24_c0_g2:874	si_a633	TRINITY_DN24_c0_g2	863	883	874	-26.40	-17.50	0.662878787878788	11.5	6-20,878-864	1-5,883-879[UP5];21-21,863-863[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGCUUAAGAAAAUCGAAAAAC&UUAUGUCGAUUUUUUUGAGUA	4	0.999999999170924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN24_c0_g2_874_TPlot.pdf
TRINITY_DN24_c2_g1:505	si_a393	TRINITY_DN24_c2_g1	494	514	505	-22.70	-14.90	0.656387665198238	8	3-17,512-498	1-2,514-513[UP5];18-21,497-494[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUACCAAUUCUAUAUUUUUUA&UUAAGAAUAUAGAAUUGUUUU	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN24_c2_g1_505_TPlot.pdf
TRINITY_DN24_c2_g1:507	si_a391	TRINITY_DN24_c2_g1	496	516	507	-22.80	-14.90	0.653508771929825	10	5-19,512-498	1-4,516-513[UP5];20-21,497-496[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACCAAUUCUAUAUUUUUUAUA&AAUUAAGAAUAUAGAAUUGUU	1	0.0611291434678507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN24_c2_g1_507_TPlot.pdf
TRINITY_DN25002_c0_g1:2060	si_s73	TRINITY_DN25002_c0_g1	2048	2069	2060	-24.00	-20.60	0.858333333333333	5.5	1-12,2069-2058;13-21,2056-2048	x-x,2057-2057[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	GAAGGGAGGCAAAAAAAGUGGA&UCUAUUUUUUUU-CUUUCCUUU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN25002_c0_g1_2060_TPlot.pdf
TRINITY_DN25002_c0_g1:4933	si_s375	TRINITY_DN25002_c0_g1	4921	4942	4933	-44.10	-28.80	0.653061224489796	7	3-12,4940-4931;13-14,4929-4928;16-21,4926-4921	1-2,4942-4941[UP5];x-x,4930-4930[BULt];15-15,4927-4927[SIL]	((((((.((.((((((((((..&..))))))))))-)).))))))	AAGGCGAACAACGUGAGCGACU&GAUCGCUCGCGU-GUCCGCCUU	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN25002_c0_g1_4933_TPlot.pdf
TRINITY_DN25002_c0_g1:5351	si_a159	TRINITY_DN25002_c0_g1	5339	5360	5351	-33.80	-23.10	0.683431952662722	10	3-8,5358-5353;10-12,5351-5349;13-21,5347-5339	1-2,5360-5359[UP5];9-9,5352-5352[SIL];x-x,5348-5348[BULt]	(((((((((.(((.((((((..&..)))))).)))-)))))))))	GGGUGGAUGUGGUGGGCCUUCU&UUAAGGUCAAUC-UAUUCACCC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a159_TRINITY_DN25002_c0_g1_5351_TPlot.pdf
TRINITY_DN25003_c0_g1:161	si_a410	TRINITY_DN25003_c0_g1	145	170	161	-17.80	-12.80	0.719101123595506	12	1-11,170-160;12-21,154-145	x-x,159-155[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	UUUAUUUAAAAUUAUUAUAGACGAAA&UUUUGUUUAUA-----UUUAAAUAAA	2	0.99870110772865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN25003_c0_g1_161_TPlot.pdf
TRINITY_DN2500_c0_g1:1147	si_s482	TRINITY_DN2500_c0_g1	1136	1156	1147	-21.20	-15.10	0.712264150943396	8	3-8,1154-1149;10-20,1147-1137	1-2,1156-1155[UP5];9-9,1148-1148[SIL];21-21,1136-1136[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UUAUUUAAAUAGUUGUAGGUU&AUCCUAUAUUUAUUUAAAUAU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN2500_c0_g1_1147_TPlot.pdf
TRINITY_DN2500_c0_g1:159	si_s770	TRINITY_DN2500_c0_g1	148	168	159	-26.60	-19.10	0.718045112781955	8.5	2-19,167-150	1-1,168-168[UP5];20-21,149-148[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GUUGGUAGUGGUGAUUAGUUU&CGAUUAAUUACUAUUGCUAUA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN2500_c0_g1_159_TPlot.pdf
TRINITY_DN2500_c0_g1:663	si_a319	TRINITY_DN2500_c0_g1	643	672	663	-22.40	-14.80	0.660714285714286	23	1-11,672-662;12-21,652-643	x-x,661-653[BULt]	((((((((((.........(((((((((((&)))))))))))---------))))))))))	AGUGGAAGAAUUUCAUAAUUCGUGGGUGAA&UUUAUCCAUGA---------UUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2500_c0_g1_663_TPlot.pdf
TRINITY_DN25017_c1_g1:284	si_a329	TRINITY_DN25017_c1_g1	273	293	284	-29.60	-23.60	0.797297297297297	13.5	6-21,288-273	1-5,293-289[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGGGGCGAGGAGUGAGCCUUG&AUUUUUUUAUUCCUUGUCCCG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN25017_c1_g1_284_TPlot.pdf
TRINITY_DN25017_c1_g1:285	si_a328	TRINITY_DN25017_c1_g1	274	294	285	-30.10	-22.90	0.760797342192691	15	7-21,288-274	1-6,294-289[UP5]	(((((((((((((((......&......)))))))))))))))	GGGGCGAGGAGUGAGCCUUGA&GAUUUUUUUAUUCCUUGUCCC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN25017_c1_g1_285_TPlot.pdf
TRINITY_DN25017_c1_g1:316	si_a665	TRINITY_DN25017_c1_g1	305	325	316	-29.60	-20.30	0.685810810810811	12	4-10,322-316;12-20,314-306	1-3,325-323[UP5];11-11,315-315[SIL];21-21,305-305[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	CGUGGGGAGUGAAUGGGUCUG&AAUGCCUAUUGAUUCCUUAUU	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN25017_c1_g1_316_TPlot.pdf
TRINITY_DN2502_c0_g1:1326	si_a429	TRINITY_DN2502_c0_g1	1314	1335	1326	-32.00	-24.40	0.7625	8.5	1-10,1335-1326;11-19,1324-1316	x-x,1325-1325[BULt];20-21,1315-1314[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AAGUUCAGCGGUGUCCUGUGUU&AAUAUAGGAU-CCGUUGGAUAU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN2502_c0_g1_1326_TPlot.pdf
TRINITY_DN2502_c0_g1:1329	si_a426	TRINITY_DN2502_c0_g1	1317	1338	1329	-31.80	-22.80	0.716981132075472	9.5	4-13,1335-1326;14-21,1324-1317	1-3,1338-1336[UP5];x-x,1325-1325[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	UUCAGCGGUGUCCUGUGUUAAU&AUAAAUAUAGGAU-CCGUUGGA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN2502_c0_g1_1329_TPlot.pdf
TRINITY_DN2502_c0_g1:1330	si_a425	TRINITY_DN2502_c0_g1	1318	1339	1330	-30.80	-21.50	0.698051948051948	11.5	5-14,1335-1326;15-21,1324-1318	1-4,1339-1336[UP5];x-x,1325-1325[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	UCAGCGGUGUCCUGUGUUAAUC&AAUAAAUAUAGGAU-CCGUUGG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN2502_c0_g1_1330_TPlot.pdf
TRINITY_DN2502_c0_g1:1331	si_a424	TRINITY_DN2502_c0_g1	1319	1340	1331	-28.40	-20.40	0.71830985915493	13	6-15,1335-1326;16-21,1324-1319	1-5,1340-1336[UP5];x-x,1325-1325[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	CAGCGGUGUCCUGUGUUAAUCC&AAAUAAAUAUAGGAU-CCGUUG	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN2502_c0_g1_1331_TPlot.pdf
TRINITY_DN2502_c0_g1:538	si_s448	TRINITY_DN2502_c0_g1	529	547	538	-23.00	-16.60	0.721739130434783	3.5	1-14,547-534;17-21,533-529	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	GGUAA--GUUGUUAUAUAUGA&UUAUAUAUAACAACAAUUAUC	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN2502_c0_g1_538_TPlot.pdf
TRINITY_DN2502_c0_g1:539	si_s447	TRINITY_DN2502_c0_g1	528	548	539	-21.10	-15.50	0.734597156398104	8	2-15,547-534	1-1,548-548[UP5];16-21,533-528[UP3]	......((((((((((((((.&.))))))))))))))......	UGGUAAGUUGUUAUAUAUGAA&AUUAUAUAUAACAACAAUUAU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN2502_c0_g1_539_TPlot.pdf
TRINITY_DN2502_c0_g1:540	si_s446	TRINITY_DN2502_c0_g1	529	549	540	-21.30	-15.50	0.727699530516432	9	3-16,547-534	1-2,549-548[UP5];17-21,533-529[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGUAAGUUGUUAUAUAUGAAU&UAUUAUAUAUAACAACAAUUA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN2502_c0_g1_540_TPlot.pdf
TRINITY_DN2502_c0_g1:541	si_s445	TRINITY_DN2502_c0_g1	530	550	541	-21.10	-15.50	0.734597156398104	10	4-17,547-534	1-3,550-548[UP5];18-21,533-530[UP3]	....((((((((((((((...&...))))))))))))))....	GUAAGUUGUUAUAUAUGAAUG&AUAUUAUAUAUAACAACAAUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN2502_c0_g1_541_TPlot.pdf
TRINITY_DN2502_c0_g1:543	si_s443	TRINITY_DN2502_c0_g1	532	551	543	-23.50	-16.60	0.706382978723404	6	2-4,550-548;6-19,547-534	1-1,551-551[UP5];5-5,x-x[BULq];20-21,533-532[UP3]	..((((((((((((((-(((.&.))).))))))))))))))..	AAGUUGUUAUAUAUGA-AUGA&ACAUAUUAUAUAUAACAACAA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN2502_c0_g1_543_TPlot.pdf
TRINITY_DN2502_c0_g1:544	si_s442	TRINITY_DN2502_c0_g1	533	552	544	-23.80	-16.60	0.697478991596639	7	3-5,550-548;7-20,547-534	1-2,552-551[UP5];6-6,x-x[BULq];21-21,533-533[UP3]	.((((((((((((((-(((..&..))).)))))))))))))).	AGUUGUUAUAUAUGA-AUGAA&UACAUAUUAUAUAUAACAACA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN2502_c0_g1_544_TPlot.pdf
TRINITY_DN2502_c0_g1:545	si_s441	TRINITY_DN2502_c0_g1	534	553	545	-23.20	-16.10	0.693965517241379	8	4-6,550-548;8-21,547-534	1-3,553-551[UP5];7-7,x-x[BULq]	((((((((((((((-(((...&...))).))))))))))))))	GUUGUUAUAUAUGA-AUGAAU&UUACAUAUUAUAUAUAACAAC	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN2502_c0_g1_545_TPlot.pdf
TRINITY_DN2502_c0_g1:546	si_s418	TRINITY_DN2502_c0_g1	534	557	546	-26.70	-17.60	0.659176029962547	7.5	2-6,556-552;7-10,549-546;11-21,544-534	1-1,557-557[UP5];x-x,551-550[BULt];x-x,545-545[BULt]	(((((((((((.((((..(((((.&.)))))--))))-)))))))))))	GUUGUUAUAUAUGAAUGAAUGUCU&CGACAU--AUUC-UAUAUAACAAU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s418_TRINITY_DN2502_c0_g1_546_TPlot.pdf
TRINITY_DN25035_c1_g1:756	si_a497	TRINITY_DN25035_c1_g1	745	767	756	-32.00	-21.00	0.65625	8	2-7,766-761;8-12,758-754;14-20,752-746	1-1,767-767[UP5];x-x,760-759[BULt];13-13,753-753[SIL];21-21,745-745[UP3]	.(((((((.(((((..((((((.&.))))))--))))).))))))).	CAGGAAGAAGAGAAGCACGACAA&AUGUCGU--UUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN25035_c1_g1_756_TPlot.pdf
TRINITY_DN25036_c0_g1:165	si_s603	TRINITY_DN25036_c0_g1	154	175	165	-27.20	-17.70	0.650735294117647	10	1-5,175-171;6-17,169-158	x-x,170-170[BULt];18-21,157-154[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	AAGAGGAGGAGGUUUGACUUGG&CCAAG-CGAAUCUUUUUUAAAU	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN25036_c0_g1_165_TPlot.pdf
TRINITY_DN25036_c0_g1:37	si_s79	TRINITY_DN25036_c0_g1	26	50	37	-26.20	-17.60	0.67175572519084	14.5	1-9,50-42;10-18,37-29	x-x,41-38[BULt];19-21,28-26[UP3]	...(((((((((....(((((((((&)))))))))----)))))))))...	ACCGAGAAAGGAACUCGAGAAGAGA&UUUUUUCUU----UCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN25036_c0_g1_37_TPlot.pdf
TRINITY_DN25036_c0_g2:312	si_s463	TRINITY_DN25036_c0_g2	301	321	312	-31.90	-21.60	0.677115987460815	13.5	6-19,316-303	1-5,321-317[UP5];20-21,302-301[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGCUGUUGGGUGUGAGCCGGA&AUUAUCUCAUAUCCAACGGAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN25036_c0_g2_312_TPlot.pdf
TRINITY_DN25036_c0_g2:327	si_a501	TRINITY_DN25036_c0_g2	316	334	327	-33.50	-23.40	0.698507462686567	7.5	1-4,334-331;7-17,330-320;19-19,318-318	5-6,x-x[BULq];18-18,319-319[SIL];20-21,317-316[UP3]	..(.(((((((((((--((((&))))..))))))))))).)..	GCCGGAGGAAGACGA--AACG&CGUUUUUCGUCUUCCUUGGAA	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN25036_c0_g2_327_TPlot.pdf
TRINITY_DN2503_c0_g1:3909	si_a149	TRINITY_DN2503_c0_g1	3897	3918	3909	-29.40	-19.12	0.650340136054422	12	1-11,3918-3908;15-18,3903-3900	12-14,3907-3904[AILt];19-21,3899-3897[UP3]	...((((....(((((((((((&)))))))))))-...))))...	AUCGACCAGUCAGACGACGACG&CGUUGUUGUUU-UAAGGUCAAU	4	0.999999999621619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN2503_c0_g1_3909_TPlot.pdf
TRINITY_DN2503_c0_g1:3912	si_a146	TRINITY_DN2503_c0_g1	3900	3921	3912	-29.70	-21.32	0.717845117845118	7.5	2-14,3920-3908;18-21,3903-3900	1-1,3921-3921[UP5];15-17,3907-3904[AILt]	((((....(((((((((((((.&.)))))))))))))-...))))	GACCAGUCAGACGACGACGAUC&AAUCGUUGUUGUUU-UAAGGUC	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN2503_c0_g1_3912_TPlot.pdf
TRINITY_DN2503_c0_g1:3919	si_a139	TRINITY_DN2503_c0_g1	3908	3928	3919	-25.90	-17.50	0.675675675675676	7.5	2-3,3927-3926;5-7,3924-3922;9-21,3920-3908	1-1,3928-3928[UP5];4-4,3925-3925[SIL];8-8,3921-3921[SIL]	(((((((((((((.(((.((.&.)).))).)))))))))))))	AGACGACGACGAUCAAUCGCC&AGUAAUUAAUCGUUGUUGUUU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN2503_c0_g1_3919_TPlot.pdf
TRINITY_DN2503_c0_g1:806	si_a298	TRINITY_DN2503_c0_g1	795	815	806	-28.10	-18.30	0.651245551601424	7.5	3-5,813-811;7-9,809-807;11-21,805-795	1-2,815-814[UP5];6-6,810-810[SIL];10-10,806-806[SIL]	(((((((((((.(((.(((..&..))).))).)))))))))))	UCCAAGUGAAUGUUUCUUAUG&UUUAAAAAAGAUUCGCUUGGA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN2503_c0_g1_806_TPlot.pdf
TRINITY_DN25047_c0_g1:14	si_s18	TRINITY_DN25047_c0_g1	1	23	14	-27.50	-18.40	0.669090909090909	11	5-17,19-7;18-21,4-1	1-4,23-20[UP5];x-x,6-5[BULt]	((((..(((((((((((((....&....)))))))))))))--))))	GGUUUGGCAGUCAAUAUGGAUAG&AUUACUAUAUUGAUUGC--AACU	1	0.0417307489907761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN25047_c0_g1_14_TPlot.pdf
TRINITY_DN25052_c0_g1:113	si_a145	TRINITY_DN25052_c0_g1	102	124	113	-28.10	-18.40	0.654804270462633	11.5	3-7,122-118;8-19,115-104	1-2,124-123[UP5];x-x,117-116[BULt];20-21,103-102[UP3]	..((((((((((((..(((((..&..)))))--))))))))))))..	AACUUAAGACAGCAGGACGGUGG&UAAUCGU--UGUUGUUUUAAGGU	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN25052_c0_g1_113_TPlot.pdf
TRINITY_DN25052_c0_g1:114	si_a144	TRINITY_DN25052_c0_g1	103	125	114	-27.40	-18.40	0.671532846715328	12.5	4-8,122-118;9-20,115-104	1-3,125-123[UP5];x-x,117-116[BULt];21-21,103-103[UP3]	.((((((((((((..(((((...&...)))))--)))))))))))).	ACUUAAGACAGCAGGACGGUGGC&UUAAUCGU--UGUUGUUUUAAGG	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN25052_c0_g1_114_TPlot.pdf
TRINITY_DN25052_c0_g1:115	si_a143	TRINITY_DN25052_c0_g1	104	126	115	-25.10	-17.90	0.713147410358566	13.5	5-9,122-118;10-21,115-104	1-4,126-123[UP5];x-x,117-116[BULt]	((((((((((((..(((((....&....)))))--))))))))))))	CUUAAGACAGCAGGACGGUGGCC&AUUAAUCGU--UGUUGUUUUAAG	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN25052_c0_g1_115_TPlot.pdf
TRINITY_DN25052_c0_g1:130	si_a505	TRINITY_DN25052_c0_g1	117	139	130	-33.30	-21.98	0.66006006006006	8.5	1-11,139-129;13-15,127-125;18-20,120-118	12-12,128-128[SIL];16-17,124-121[AILt];21-21,117-117[UP3]	.(((....(((.(((((((((((&))))))))))).)))--..))).	GACGGUGGCCAUGGAAGACGGAA&UUUCGUCUUCCUUGG--AAUGUA	3	0.999991544621683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN25052_c0_g1_130_TPlot.pdf
TRINITY_DN25052_c0_g1:131	si_a504	TRINITY_DN25052_c0_g1	118	140	131	-32.90	-21.78	0.662006079027356	7.5	2-12,139-129;14-16,127-125;19-21,120-118	1-1,140-140[UP5];13-13,128-128[SIL];17-18,124-121[AILt]	(((....(((.(((((((((((.&.))))))))))).)))--..)))	ACGGUGGCCAUGGAAGACGGAAU&UUUUCGUCUUCCUUGG--AAUGU	3	0.999998883256769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN25052_c0_g1_131_TPlot.pdf
TRINITY_DN25052_c0_g1:133	si_a502	TRINITY_DN25052_c0_g1	122	142	133	-32.10	-21.80	0.679127725856698	9	1-1,142-142;4-14,139-129;16-18,127-125	2-3,141-140[SIL];15-15,128-128[SIL];19-21,124-122[UP3]	...(((.(((((((((((..(&)..))))))))))).)))...	UGGCCAUGGAAGACGGAAUCC&GUUUUUCGUCUUCCUUGGAAU	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN25052_c0_g1_133_TPlot.pdf
TRINITY_DN25052_c0_g1:134	si_a501	TRINITY_DN25052_c0_g1	123	143	134	-33.50	-23.30	0.695522388059702	8	1-2,143-142;5-15,139-129;17-19,127-125	3-4,141-140[SIL];16-16,128-128[SIL];20-21,124-123[UP3]	..(((.(((((((((((..((&))..))))))))))).)))..	GGCCAUGGAAGACGGAAUCCG&CGUUUUUCGUCUUCCUUGGAA	2	0.998395044015175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN25052_c0_g1_134_TPlot.pdf
TRINITY_DN25052_c0_g1:195	si_s64	TRINITY_DN25052_c0_g1	184	204	195	-24.10	-17.50	0.726141078838174	9.5	1-5,204-200;8-18,197-187	6-7,199-198[SIL];19-21,186-184[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	CCUGAAAAUGGAAGGCGCUGA&UUAGCAACUUCUAUUUUUUUU	2	0.982920744291004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN25052_c0_g1_195_TPlot.pdf
TRINITY_DN25052_c0_g1:196	si_s63	TRINITY_DN25052_c0_g1	185	205	196	-25.80	-17.50	0.678294573643411	9	2-6,204-200;9-19,197-187	1-1,205-205[UP5];7-8,199-198[SIL];20-21,186-185[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	CUGAAAAUGGAAGGCGCUGAA&GUUAGCAACUUCUAUUUUUUU	4	0.999986162919743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN25052_c0_g1_196_TPlot.pdf
TRINITY_DN25052_c0_g1:198	si_s61	TRINITY_DN25052_c0_g1	187	207	198	-26.50	-17.50	0.660377358490566	11	4-8,204-200;11-21,197-187	1-3,207-205[UP5];9-10,199-198[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GAAAAUGGAAGGCGCUGAAGC&AAGUUAGCAACUUCUAUUUUU	4	0.999980747715898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN25052_c0_g1_198_TPlot.pdf
TRINITY_DN25052_c0_g1:203	si_a497	TRINITY_DN25052_c0_g1	191	212	203	-32.00	-21.40	0.66875	11.5	1-3,212-210;5-10,208-203;12-19,200-193	4-4,209-209[SIL];11-11,202-201[AILt];20-21,192-191[UP3]	..((((((((..((((((.(((&))).))))))-.))))))))..	AUGGAAGGCGCUGAAGCGUCGU&AUGUCGUUUU-UCGUCUUCCUU	2	0.999999998394586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN25052_c0_g1_203_TPlot.pdf
TRINITY_DN25052_c0_g1:204	si_a496	TRINITY_DN25052_c0_g1	192	213	204	-32.40	-22.20	0.685185185185185	11	1-4,213-210;6-11,208-203;13-20,200-193	5-5,209-209[SIL];12-12,202-201[AILt];21-21,192-192[UP3]	.((((((((..((((((.((((&)))).))))))-.)))))))).	UGGAAGGCGCUGAAGCGUCGUG&UAUGUCGUUUU-UCGUCUUCCU	3	0.999999745227742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN25052_c0_g1_204_TPlot.pdf
TRINITY_DN25052_c0_g1:205	si_a495	TRINITY_DN25052_c0_g1	193	214	205	-31.90	-21.80	0.683385579937304	10.5	2-5,213-210;7-12,208-203;14-21,200-193	1-1,214-214[UP5];6-6,209-209[SIL];13-13,202-201[AILt]	((((((((..((((((.((((.&.)))).))))))-.))))))))	GGAAGGCGCUGAAGCGUCGUGC&AUAUGUCGUUUU-UCGUCUUCC	3	0.999997865526154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN25052_c0_g1_205_TPlot.pdf
TRINITY_DN25052_c0_g1:284	si_s628	TRINITY_DN25052_c0_g1	273	297	284	-35.40	-25.00	0.706214689265537	13	1-9,297-289;10-13,284-281;15-21,279-273	x-x,288-285[BULt];14-14,280-280[SIL]	(((((((.((((....(((((((((&)))))))))----)))).)))))))	AAGCGCUGACGAGUAGGAGGGUCGC&GCGAUCUUU----UCGUAGGCGUUU	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN25052_c0_g1_284_TPlot.pdf
TRINITY_DN25052_c0_g1:54	si_a627	TRINITY_DN25052_c0_g1	43	63	54	-29.50	-19.20	0.650847457627119	9	1-5,63-59;7-9,57-55;12-20,52-44	6-6,58-58[SIL];10-11,54-53[SIL];21-21,43-43[UP3]	.(((((((((..(((.(((((&))))).)))..))))))))).	CAAAGGUCGAGUUAAAGCGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.999999948524549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN25052_c0_g1_54_TPlot.pdf
TRINITY_DN25052_c0_g1:55	si_a626	TRINITY_DN25052_c0_g1	44	64	55	-30.20	-20.60	0.682119205298013	8	1-6,64-59;8-10,57-55;13-21,52-44	7-7,58-58[SIL];11-12,54-53[SIL]	(((((((((..(((.((((((&)))))).)))..)))))))))	AAAGGUCGAGUUAAAGCGCCU&AGGCGUAUUAUGUCGAUUUUU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN25052_c0_g1_55_TPlot.pdf
TRINITY_DN25052_c0_g1:56	si_a625	TRINITY_DN25052_c0_g1	45	65	56	-30.60	-21.10	0.689542483660131	7	1-7,65-59;9-11,57-55;14-21,52-45	8-8,58-58[SIL];12-13,54-53[SIL]	((((((((..(((.(((((((&))))))).)))..))))))))	AAGGUCGAGUUAAAGCGCCUA&UAGGCGUAUUAUGUCGAUUUU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN25052_c0_g1_56_TPlot.pdf
TRINITY_DN25052_c0_g1:97	si_s61	TRINITY_DN25052_c0_g1	86	106	97	-26.50	-17.40	0.656603773584906	8.5	1-11,106-96;13-15,94-92	12-12,95-95[SIL];16-21,91-86[UP3]	......(((.(((((((((((&))))))))))).)))......	CAUGAAAGGCGUUGCUAACUU&AAGUUAGCAACUUCUAUUUUU	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN25052_c0_g1_97_TPlot.pdf
TRINITY_DN25054_c0_g1:2164	si_s93	TRINITY_DN25054_c0_g1	2153	2173	2164	-34.80	-26.10	0.75	7.5	2-5,2172-2169;8-20,2166-2154	1-1,2173-2173[UP5];6-7,2168-2167[SIL];21-21,2153-2153[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	CAUCCGAGGCGAAGCCGAGGU&UCUUCUUCUUCGCUUCGGAUU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN25054_c0_g1_2164_TPlot.pdf
TRINITY_DN25054_c0_g1:2166	si_s91	TRINITY_DN25054_c0_g1	2155	2175	2166	-34.70	-25.00	0.720461095100865	10.5	4-7,2172-2169;10-21,2166-2155	1-3,2175-2173[UP5];8-9,2168-2167[SIL]	((((((((((((..((((...&...))))..))))))))))))	UCCGAGGCGAAGCCGAGGUUA&UUUCUUCUUCUUCGCUUCGGA	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN25054_c0_g1_2166_TPlot.pdf
TRINITY_DN25054_c0_g1:2167	si_s90	TRINITY_DN25054_c0_g1	2156	2176	2167	-35.30	-24.80	0.702549575070822	9.5	1-2,2176-2175;5-8,2172-2169;11-21,2166-2156	3-4,2174-2173[SIL];9-10,2168-2167[SIL]	(((((((((((..((((..((&))..))))..)))))))))))	CCGAGGCGAAGCCGAGGUUAG&CUUUCUUCUUCUUCGCUUCGG	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN25054_c0_g1_2167_TPlot.pdf
TRINITY_DN25054_c0_g1:2632	si_s236	TRINITY_DN25054_c0_g1	2618	2641	2632	-29.60	-19.32	0.652702702702703	17	5-10,2637-2632;13-21,2626-2618	1-4,2641-2638[UP5];11-12,2631-2627[AILt]	(((((((((.....((((((....&....))))))---..)))))))))	AAAUGCCUAGCAAGGAUUCCCACU&AUAAGGAAUC---AAUAGGCAUUU	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN25054_c0_g1_2632_TPlot.pdf
TRINITY_DN25054_c1_g1:402	si_a344	TRINITY_DN25054_c1_g1	389	411	402	-28.50	-19.20	0.673684210526316	8.5	1-8,411-404;10-13,402-399;14-20,396-390	9-9,403-403[SIL];x-x,398-397[BULt];21-21,389-389[UP3]	.(((((((..((((.((((((((&)))))))).))))--))))))).	GGGAAUUGCAGUGUGUUUGGGAC&GUCCCGAAAAUAU--UAAUUCUA	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN25054_c1_g1_402_TPlot.pdf
TRINITY_DN25054_c1_g1:403	si_a343	TRINITY_DN25054_c1_g1	390	412	403	-28.80	-19.80	0.6875	7.5	1-9,412-404;11-14,402-399;15-21,396-390	10-10,403-403[SIL];x-x,398-397[BULt]	(((((((..((((.(((((((((&))))))))).))))--)))))))	GGAAUUGCAGUGUGUUUGGGACA&UGUCCCGAAAAUAU--UAAUUCU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN25054_c1_g1_403_TPlot.pdf
TRINITY_DN25054_c1_g1:404	si_a342	TRINITY_DN25054_c1_g1	391	413	404	-28.20	-19.40	0.687943262411348	6.5	1-10,413-404;12-15,402-399;16-21,396-391	11-11,403-403[SIL];x-x,398-397[BULt]	((((((..((((.((((((((((&)))))))))).))))--))))))	GAAUUGCAGUGUGUUUGGGACAA&UUGUCCCGAAAAUAU--UAAUUC	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a342_TRINITY_DN25054_c1_g1_404_TPlot.pdf
TRINITY_DN25060_c0_g1:251	si_a328	TRINITY_DN25060_c0_g1	240	260	251	-30.10	-20.10	0.667774086378738	12	4-15,257-246;17-21,244-240	1-3,260-258[UP5];16-16,245-245[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GGGAUUGGGGGUGAAGAGCAG&GAUUUUUUUAUUCCUUGUCCC	3	0.99999818466634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN25060_c0_g1_251_TPlot.pdf
TRINITY_DN25060_c0_g1:52	si_a719	TRINITY_DN25060_c0_g1	41	61	52	-34.60	-27.10	0.783236994219653	10.5	5-18,57-44;20-21,42-41	1-4,61-58[UP5];19-19,43-43[SIL]	((.((((((((((((((....&....)))))))))))))).))	GGCGCCCGAGUGGCGAUCCGC&AAUAAUCGUUACUCGGGCAUC	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN25060_c0_g1_52_TPlot.pdf
TRINITY_DN25062_c0_g1:158	si_s538	TRINITY_DN25062_c0_g1	147	167	158	-28.00	-18.20	0.65	9	1-11,167-157;13-17,155-151	12-12,156-156[SIL];18-21,150-147[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CGUCUUUGACCGGGUCAAGGA&UUUUUGAUCCGAUCAAAAUAG	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN25062_c0_g1_158_TPlot.pdf
TRINITY_DN2506_c0_g1:378	si_a410	TRINITY_DN2506_c0_g1	367	387	378	-17.80	-12.30	0.691011235955056	9.5	1-14,387-374	15-21,373-367[UP3]	.......((((((((((((((&)))))))))))))).......	UAAAGAAAGAUGUAAACAAGA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999995107032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2506_c0_g1_378_TPlot.pdf
TRINITY_DN25070_c0_g1:1574	si_s87	TRINITY_DN25070_c0_g1	1562	1582	1574	-32.90	-22.30	0.677811550151976	5	1-7,1582-1576;9-16,1575-1568;17-21,1566-1562	8-8,x-x[BULq];x-x,1567-1567[BULt]	(((((.((((((((-(((((((&))))))).))))))))-)))))	GAGCGCGAGAAGGA-AAAGGAA&UUCCUUUCUUCUUCUU-CGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN25070_c0_g1_1574_TPlot.pdf
TRINITY_DN25070_c0_g1:1597	si_s75	TRINITY_DN25070_c0_g1	1585	1606	1597	-24.00	-17.60	0.733333333333333	11.5	4-11,1603-1596;12-21,1594-1585	1-3,1606-1604[UP5];x-x,1595-1595[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	GGAGAGGGAACGAGAAAGGGAG&UAUUUUUUUUC-UUUCCUUUCU	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN25070_c0_g1_1597_TPlot.pdf
TRINITY_DN25070_c0_g1:1598	si_s80	TRINITY_DN25070_c0_g1	1585	1607	1598	-28.20	-20.20	0.716312056737589	8.5	1-10,1607-1598;11-11,1596-1596;12-21,1594-1585	x-x,1597-1597[BULt];x-x,1595-1595[BULt]	((((((((((.(.((((((((((&))))))))))-)-))))))))))	GGAGAGGGAACGAGAAAGGGAGA&UUUUUCUUUC-C-UUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN25070_c0_g1_1598_TPlot.pdf
TRINITY_DN25070_c0_g1:1602	si_s82	TRINITY_DN25070_c0_g1	1583	1611	1602	-28.90	-20.10	0.695501730103806	23.5	1-10,1611-1602;11-20,1593-1584	x-x,1601-1594[BULt];21-21,1583-1583[UP3]	.((((((((((........((((((((((&))))))))))--------)))))))))).	CGGGAGAGGGAACGAGAAAGGGAGAGGGA&UUUCUUUCCU--------UUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN25070_c0_g1_1602_TPlot.pdf
TRINITY_DN25070_c0_g1:1846	si_s81	TRINITY_DN25070_c0_g1	1835	1855	1846	-28.90	-20.10	0.695501730103806	9	1-6,1855-1850;8-17,1848-1839	7-7,1849-1849[SIL];18-21,1838-1835[UP3]	....((((((((((.((((((&)))))).))))))))))....	GACCGAAGAGGGGAUAGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN25070_c0_g1_1846_TPlot.pdf
TRINITY_DN25070_c0_g1:1850	si_s77	TRINITY_DN25070_c0_g1	1839	1859	1850	-25.50	-21.70	0.850980392156863	8	3-10,1857-1850;12-21,1848-1839	1-2,1859-1858[UP5];11-11,1849-1849[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	GAAGAGGGGAUAGAAGAGAUG&UUUUUUUUCUUUCCUUUCUUC	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25070_c0_g1_1850_TPlot.pdf
TRINITY_DN25070_c0_g1:1851	si_s76	TRINITY_DN25070_c0_g1	1840	1860	1851	-23.60	-18.40	0.779661016949152	10	4-11,1857-1850;13-21,1848-1840	1-3,1860-1858[UP5];12-12,1849-1849[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAGAGGGGAUAGAAGAGAUGA&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999859519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN25070_c0_g1_1851_TPlot.pdf
TRINITY_DN25070_c0_g1:2067	si_a68	TRINITY_DN25070_c0_g1	2056	2076	2067	-25.40	-17.20	0.677165354330709	9.5	2-9,2075-2068;12-20,2065-2057	1-1,2076-2076[UP5];10-11,2067-2066[SIL];21-21,2056-2056[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	AGAGAGGCAACGUGAAAGGGA&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999439905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN25070_c0_g1_2067_TPlot.pdf
TRINITY_DN25070_c0_g1:2100	si_s77	TRINITY_DN25070_c0_g1	2086	2109	2100	-25.50	-17.80	0.698039215686275	6.5	1-10,2109-2100;11-16,2098-2093;17-21,2090-2086	x-x,2099-2099[BULt];x-x,2092-2091[BULt]	(((((..((((((.((((((((((&))))))))))-))))))--)))))	GAAGGAGGAGGAACAGAAAAGAAG&UUUUUUUUCU-UUCCUU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25070_c0_g1_2100_TPlot.pdf
TRINITY_DN25070_c0_g1:2552	si_s86	TRINITY_DN25070_c0_g1	2541	2561	2552	-32.90	-22.00	0.668693009118541	8.5	3-10,2559-2552;12-19,2550-2543	1-2,2561-2560[UP5];11-11,2551-2551[SIL];20-21,2542-2541[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	AUCGAAGGAGUAGAAGGGAUU&UUUCCUUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN25070_c0_g1_2552_TPlot.pdf
TRINITY_DN25070_c0_g1:501	si_s68	TRINITY_DN25070_c0_g1	489	510	501	-23.10	-15.30	0.662337662337662	6.5	1-8,510-503;10-17,501-494;18-21,492-489	9-9,502-502[SIL];x-x,493-493[BULt]	((((.((((((((.((((((((&)))))))).))))))))-))))	AGAGCGAAAGAGACAGGAGUUG&CAACUUCUAUUUUUUUU-CUUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN25070_c0_g1_501_TPlot.pdf
TRINITY_DN25070_c0_g1:502	si_s67	TRINITY_DN25070_c0_g1	490	511	502	-25.60	-19.00	0.7421875	6.5	1-9,511-503;11-18,501-494;19-21,492-490	10-10,502-502[SIL];x-x,493-493[BULt]	(((.((((((((.(((((((((&))))))))).))))))))-)))	GAGCGAAAGAGACAGGAGUUGC&GCAACUUCUAUUUUUUUU-CUU	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN25070_c0_g1_502_TPlot.pdf
TRINITY_DN25070_c0_g1:503	si_s66	TRINITY_DN25070_c0_g1	493	512	503	-26.30	-18.70	0.711026615969582	8	2-10,511-503;13-20,501-494	1-1,512-512[UP5];11-12,502-502[AILq];21-21,493-493[UP3]	.((((((((.-(((((((((.&.)))))))))..)))))))).	CGAAAGAGAC-AGGAGUUGCA&AGCAACUUCUAUUUUUUUUCU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN25070_c0_g1_503_TPlot.pdf
TRINITY_DN25070_c0_g1:504	si_s65	TRINITY_DN25070_c0_g1	494	513	504	-26.00	-18.40	0.707692307692308	8	3-11,511-503;14-21,501-494	1-2,513-512[UP5];12-13,502-502[AILq]	((((((((.-(((((((((..&..)))))))))..))))))))	GAAAGAGAC-AGGAGUUGCAA&UAGCAACUUCUAUUUUUUUUC	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN25070_c0_g1_504_TPlot.pdf
TRINITY_DN25070_c0_g1:558	si_a789	TRINITY_DN25070_c0_g1	537	567	558	-24.80	-16.20	0.653225806451613	23.5	1-11,567-557;12-19,546-539	x-x,556-547[BULt];20-21,538-537[UP3]	..((((((((..........(((((((((((&)))))))))))----------))))))))..	AAUGGAAAGUAAAGCUAAAAAGAAAGAUAGA&UCUAUUUUUCU----------AUUUUCCAAU	2	0.999999999311305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN25070_c0_g1_558_TPlot.pdf
TRINITY_DN25070_c0_g1:560	si_a787	TRINITY_DN25070_c0_g1	539	569	560	-26.30	-17.10	0.650190114068441	12.5	2-13,568-557;14-21,546-539	1-1,569-569[UP5];x-x,556-547[BULt]	((((((((..........((((((((((((.&.))))))))))))----------))))))))	UGGAAAGUAAAGCUAAAAAGAAAGAUAGAAA&CUUCUAUUUUUCU----------AUUUUCCA	2	0.999999999996017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN25070_c0_g1_560_TPlot.pdf
TRINITY_DN25079_c0_g1:120	si_s77	TRINITY_DN25079_c0_g1	105	129	120	-25.50	-17.60	0.690196078431373	9.5	2-16,128-114;17-20,109-106	1-1,129-129[UP5];x-x,113-110[BULt];21-21,105-105[UP3]	.((((....(((((((((((((((.&.)))))))))))))))----)))).	AAGGAAUUCAAGGAGAGAAGAGAAU&UUUUUUUUCUUUCCUU----UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25079_c0_g1_120_TPlot.pdf
TRINITY_DN25079_c0_g1:121	si_s76	TRINITY_DN25079_c0_g1	106	130	121	-23.60	-17.60	0.745762711864407	10.5	3-17,128-114;18-21,109-106	1-2,130-129[UP5];x-x,113-110[BULt]	((((....(((((((((((((((..&..)))))))))))))))----))))	AGGAAUUCAAGGAGAGAAGAGAAUG&AUUUUUUUUCUUUCCUU----UCUU	2	0.999999999896146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN25079_c0_g1_121_TPlot.pdf
TRINITY_DN25079_c0_g1:122	si_s75	TRINITY_DN25079_c0_g1	111	131	122	-24.00	-17.00	0.708333333333333	10.5	4-18,128-114	1-3,131-129[UP5];19-21,113-111[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCAAGGAGAGAAGAGAAUGA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN25079_c0_g1_122_TPlot.pdf
TRINITY_DN25079_c0_g1:123	si_s74	TRINITY_DN25079_c0_g1	112	132	123	-25.00	-17.00	0.68	11.5	5-19,128-114	1-4,132-129[UP5];20-21,113-112[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCAAGGAGAGAAGAGAAUGAA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN25079_c0_g1_123_TPlot.pdf
TRINITY_DN25079_c0_g1:125	si_s72	TRINITY_DN25079_c0_g1	114	134	125	-24.10	-17.00	0.705394190871369	13.5	7-21,128-114	1-6,134-129[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGAGAGAAGAGAAUGAACA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999957081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN25079_c0_g1_125_TPlot.pdf
TRINITY_DN25079_c0_g1:57	si_a552	TRINITY_DN25079_c0_g1	46	66	57	-33.10	-22.70	0.685800604229607	8.5	3-6,64-61;8-19,59-48	1-2,66-65[UP5];7-7,60-60[SIL];20-21,47-46[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	UAGGGAGGUAAAGAUAUGGGA&AUCUAUUUCUUUAUCUCCCCG	2	0.941441084787653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN25079_c0_g1_57_TPlot.pdf
TRINITY_DN25079_c0_g1:59	si_a550	TRINITY_DN25079_c0_g1	48	68	59	-30.90	-22.70	0.73462783171521	10.5	5-8,64-61;10-21,59-48	1-4,68-65[UP5];9-9,60-60[SIL]	((((((((((((.((((....&....)))).))))))))))))	GGGAGGUAAAGAUAUGGGAAC&CAAUCUAUUUCUUUAUCUCCC	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN25079_c0_g1_59_TPlot.pdf
TRINITY_DN2507_c0_g1:2409	si_a863	TRINITY_DN2507_c0_g1	2402	2418	2409	-24.40	-16.10	0.659836065573771	10	1-10,2418-2409;15-21,2408-2402	11-14,x-x[BULq]	(((((((----((((((((((&))))))))))....)))))))	CUGAGUC----GUGGUUGGAU&AUCCAAUUAUUAAAGAUUUAG	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN2507_c0_g1_2409_TPlot.pdf
TRINITY_DN25084_c0_g1:12	si_s80	TRINITY_DN25084_c0_g1	1	21	12	-28.20	-19.00	0.673758865248227	7	1-9,21-13;12-21,10-1	10-11,12-11[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GAAGAAGAAGAAGAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN25084_c0_g1_12_TPlot.pdf
TRINITY_DN25084_c0_g1:13	si_s82	TRINITY_DN25084_c0_g1	2	22	13	-28.90	-18.80	0.650519031141869	7	2-7,21-16;10-21,13-2	1-1,22-22[UP5];8-9,15-14[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	AAGAAGAAGAAGAAGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN25084_c0_g1_13_TPlot.pdf
TRINITY_DN25085_c0_g1:529	si_a406	TRINITY_DN25085_c0_g1	518	538	529	-19.80	-13.90	0.702020202020202	7	3-14,536-525;16-20,523-519	1-2,538-537[UP5];15-15,524-524[SIL];21-21,518-518[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	CUUAAAAAUAAACAAGGCAUC&AUUGUUUUGUUUAUAUUUAAA	2	0.999999565520544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN25085_c0_g1_529_TPlot.pdf
TRINITY_DN2508_c0_g1:1970	si_a658	TRINITY_DN2508_c0_g1	1958	1979	1970	-33.40	-26.30	0.787425149700599	5.5	2-15,1978-1965;16-21,1963-1958	1-1,1979-1979[UP5];x-x,1964-1964[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	AGUCAGUUGGGCGUUUUCCGAG&AUCGGGAAAUGCCUA-UUGAUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN2508_c0_g1_1970_TPlot.pdf
TRINITY_DN2508_c0_g1:1971	si_a657	TRINITY_DN2508_c0_g1	1959	1980	1971	-33.80	-25.60	0.757396449704142	7.5	3-16,1978-1965;17-21,1963-1959	1-2,1980-1979[UP5];x-x,1964-1964[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GUCAGUUGGGCGUUUUCCGAGU&UAUCGGGAAAUGCCUA-UUGAU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN2508_c0_g1_1971_TPlot.pdf
TRINITY_DN2508_c0_g1:1973	si_a655	TRINITY_DN2508_c0_g1	1961	1982	1973	-33.20	-22.30	0.671686746987952	10.5	5-18,1978-1965;19-21,1963-1961	1-4,1982-1979[UP5];x-x,1964-1964[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	CAGUUGGGCGUUUUCCGAGUUC&UAUAUCGGGAAAUGCCUA-UUG	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a655_TRINITY_DN2508_c0_g1_1973_TPlot.pdf
TRINITY_DN2508_c0_g1:1974	si_a654	TRINITY_DN2508_c0_g1	1963	1983	1974	-31.70	-21.80	0.687697160883281	13	6-19,1978-1965	1-5,1983-1979[UP5];20-21,1964-1963[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUGGGCGUUUUCCGAGUUCG&AUAUAUCGGGAAAUGCCUAUU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a654_TRINITY_DN2508_c0_g1_1974_TPlot.pdf
TRINITY_DN2508_c0_g1:1975	si_a653	TRINITY_DN2508_c0_g1	1964	1984	1975	-31.70	-21.80	0.687697160883281	14	7-20,1978-1965	1-6,1984-1979[UP5];21-21,1964-1964[UP3]	.((((((((((((((......&......)))))))))))))).	UUGGGCGUUUUCCGAGUUCGG&AAUAUAUCGGGAAAUGCCUAU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a653_TRINITY_DN2508_c0_g1_1975_TPlot.pdf
TRINITY_DN2508_c0_g1:2031	si_s380	TRINITY_DN2508_c0_g1	2020	2040	2031	-40.00	-27.40	0.685	10	2-14,2039-2027	1-1,2040-2040[UP5];15-21,2026-2020[UP3]	.......(((((((((((((.&.))))))))))))).......	GCUAUCCGGUGGACGCGCGAA&CUCGCGUGUCCGCCUUACAUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN2508_c0_g1_2031_TPlot.pdf
TRINITY_DN25092_c0_g1:85	si_s535	TRINITY_DN25092_c0_g1	66	94	85	-28.60	-18.90	0.660839160839161	13	1-14,94-81;15-20,72-67	x-x,80-73[BULt];21-21,66-66[UP3]	.((((((........((((((((((((((&))))))))))))))--------)))))).	CUUUGGUUUCUCUCGCGGAUCGGAAGUGG&UCAUUUUUGAUCCG--------AUCAAAA	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN25092_c0_g1_85_TPlot.pdf
TRINITY_DN25099_c0_g1:350	si_a869	TRINITY_DN25099_c0_g1	339	359	350	-24.80	-17.10	0.689516129032258	14	7-19,353-341	1-6,359-354[UP5];20-21,340-339[UP3]	..(((((((((((((......&......)))))))))))))..	GAGCGGCUAAAUCUUCAAGAA&UUAUUAAAGAUUUAGUUGCAA	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN25099_c0_g1_350_TPlot.pdf
TRINITY_DN2509_c0_g1:584	si_a424	TRINITY_DN2509_c0_g1	571	593	584	-28.40	-19.40	0.683098591549296	10.5	4-10,590-584;11-21,581-571	1-3,593-591[UP5];x-x,583-582[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	CAACGGAUUCUCAAUGUUUAGAC&AAAUAAAUAU--AGGAUCCGUUG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN2509_c0_g1_584_TPlot.pdf
TRINITY_DN25110_c0_g1:621	si_s80	TRINITY_DN25110_c0_g1	610	630	621	-28.20	-19.40	0.687943262411348	7.5	1-16,630-615	17-21,614-610[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGCCUGGAAGGGGAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN25110_c0_g1_621_TPlot.pdf
TRINITY_DN25110_c0_g1:622	si_s79	TRINITY_DN25110_c0_g1	611	631	622	-26.20	-19.60	0.748091603053435	7	2-17,630-615	1-1,631-631[UP5];18-21,614-611[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCCUGGAAGGGGAAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999999307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN25110_c0_g1_622_TPlot.pdf
TRINITY_DN25110_c0_g1:624	si_s77	TRINITY_DN25110_c0_g1	613	633	624	-25.50	-22.00	0.862745098039216	5	1-19,633-615	20-21,614-613[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CUGGAAGGGGAAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25110_c0_g1_624_TPlot.pdf
TRINITY_DN25110_c0_g1:625	si_s76	TRINITY_DN25110_c0_g1	614	634	625	-23.60	-23.30	0.98728813559322	3.5	1-20,634-615	21-21,614-614[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UGGAAGGGGAAGAAAAAGAAU&AUUUUUUUUCUUUCCUUUCUU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN25110_c0_g1_625_TPlot.pdf
TRINITY_DN25110_c0_g1:626	si_s75	TRINITY_DN25110_c0_g1	615	635	626	-24.00	-24.60	1	2.5	1-21,635-615	NA	(((((((((((((((((((((&)))))))))))))))))))))	GGAAGGGGAAGAAAAAGAAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN25110_c0_g1_626_TPlot.pdf
TRINITY_DN25110_c0_g1:627	si_s74	TRINITY_DN25110_c0_g1	616	636	627	-25.00	-23.70	0.948	3	2-21,635-616	1-1,636-636[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GAAGGGGAAGAAAAAGAAUAA&CUAUUUUUUUUCUUUCCUUUC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN25110_c0_g1_627_TPlot.pdf
TRINITY_DN25110_c0_g1:629	si_s72	TRINITY_DN25110_c0_g1	618	639	629	-24.10	-20.30	0.842323651452282	5	2-4,638-636;5-21,634-618	1-1,639-639[UP5];x-x,635-635[BULt]	(((((((((((((((((.(((.&.)))-)))))))))))))))))	AGGGGAAGAAAAAGAAUAAGAG&UUCU-AUUUUUUUUCUUUCCUU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN25110_c0_g1_629_TPlot.pdf
TRINITY_DN25110_c1_g1:202	si_a413	TRINITY_DN25110_c1_g1	190	211	202	-18.40	-14.40	0.782608695652174	6	1-15,211-197;16-19,195-192	x-x,196-196[BULt];20-21,191-190[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	UAGUUUAGUUUAAAUGUGAACA&UGUUUAUAUUUAAAU-AAAUAU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN25110_c1_g1_202_TPlot.pdf
TRINITY_DN25117_c0_g1:19	si_s104	TRINITY_DN25117_c0_g1	9	29	19	-32.70	-23.00	0.703363914373089	4.5	1-8,29-22;9-16,20-13;18-21,12-9	x-x,21-21[BULt];17-17,x-x[BULq]	((((-((((((((.((((((((&))))))))-)))))))).))))	UUCU-UUUUCCAAUUCCGAGGU&GCUUCGGA-UUGGAAAAUAGAA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN25117_c0_g1_19_TPlot.pdf
TRINITY_DN25117_c0_g1:388	si_s280	TRINITY_DN25117_c0_g1	378	397	388	-36.40	-25.80	0.708791208791209	5	2-5,396-393;7-17,391-381;19-20,380-379	1-1,397-397[UP5];6-6,392-392[SIL];18-18,x-x[BULq];21-21,378-378[UP3]	.((-(((((((((((.((((.&.)))).))))))))))).)).	CCG-CUAGGCGUAUUCUGUCA&CGACAUAAUACGCCUAGUCGA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s280_TRINITY_DN25117_c0_g1_388_TPlot.pdf
TRINITY_DN2511_c0_g1:546	si_s72	TRINITY_DN2511_c0_g1	534	555	546	-24.10	-17.00	0.705394190871369	8.5	3-16,553-540;17-20,538-535	1-2,555-554[UP5];x-x,539-539[BULt];21-21,534-534[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	UGGGAUAAGAAAAAAGGUGGUC&UUCUAUUUUUUUUCUU-UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2511_c0_g1_546_TPlot.pdf
TRINITY_DN2511_c0_g1:560	si_s741	TRINITY_DN2511_c0_g1	548	572	560	-33.80	-22.00	0.650887573964497	12	1-4,572-569;5-13,565-557;14-17,555-552	x-x,568-566[BULt];x-x,556-556[BULt];18-21,551-548[UP3]	....((((.(((((((((...((((&))))---)))))))))-))))....	AGGUGGUCAAGUCUAUUCCAUACCC&GGGU---GAAUAGAUU-GACCUUAA	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN2511_c0_g1_560_TPlot.pdf
TRINITY_DN2511_c0_g1:611	si_a751	TRINITY_DN2511_c0_g1	600	619	611	-37.20	-24.50	0.658602150537634	6.5	1-3,619-617;5-13,616-608;15-18,606-603	4-4,x-x[BULq];14-14,607-607[SIL];19-21,602-600[UP3]	...((((.(((((((((-(((&))).))))))))).))))...	GUUUCCAUAGGAGGUUC-UGG&CCAUGAACCUCCUUUGGGUUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN2511_c0_g1_611_TPlot.pdf
TRINITY_DN2511_c0_g1:637	si_a415	TRINITY_DN2511_c0_g1	626	646	637	-18.10	-12.46	0.688397790055249	10.5	1-7,646-640;12-21,635-626	8-11,639-636[SIL]	((((((((((....(((((((&)))))))....))))))))))	CUAUGUUUAUGGUUAUGUAGA&UUUAUAUUUAAAUAAAUAUAG	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN2511_c0_g1_637_TPlot.pdf
TRINITY_DN2512_c0_g1:235	si_a868	TRINITY_DN2512_c0_g1	224	244	235	-24.80	-16.20	0.653225806451613	18	10-20,235-225	1-9,244-236[UP5];21-21,224-224[UP3]	.(((((((((((.........&.........))))))))))).	AGCAACUAAAUCAUCACACAA&AUUAUUAAAGAUUUAGUUGCA	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN2512_c0_g1_235_TPlot.pdf
TRINITY_DN2512_c0_g1:767	si_s874	TRINITY_DN2512_c0_g1	756	776	767	-28.00	-18.40	0.657142857142857	11	1-12,776-765	13-21,764-756[UP3]	.........((((((((((((&)))))))))))).........	CUGGCUUACGUUCUAGGACUG&CGGUCUUAGAACUAAAAAUAA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN2512_c0_g1_767_TPlot.pdf
TRINITY_DN2512_c0_g1:866	si_a229	TRINITY_DN2512_c0_g1	855	875	866	-27.60	-18.60	0.673913043478261	8.5	1-8,875-868;10-11,866-865;13-20,863-856	9-9,867-867[SIL];12-12,864-864[SIL];21-21,855-855[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	GGAGUUGAUGGUUGGGACAUG&CAUGUUUCUAUAAUCAAUUCG	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN2512_c0_g1_866_TPlot.pdf
TRINITY_DN25130_c0_g1:314	si_a446	TRINITY_DN25130_c0_g1	303	323	314	-25.50	-18.10	0.709803921568627	11.5	5-9,319-315;11-21,313-303	1-4,323-320[UP5];10-10,314-314[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GUAGCAGCAGUCAUCUCCCUG&AUAUGAGAUAAUUGUUGUUAU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN25130_c0_g1_314_TPlot.pdf
TRINITY_DN2513_c0_g1:2404	si_s76	TRINITY_DN2513_c0_g1	2393	2413	2404	-23.60	-16.20	0.686440677966102	13.5	7-15,2407-2399;17-21,2397-2393	1-6,2413-2408[UP5];16-16,2398-2398[SIL]	(((((.(((((((((......&......))))))))).)))))	GAGAAUGGAAAGAGAUUCUGA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2513_c0_g1_2404_TPlot.pdf
TRINITY_DN2513_c0_g2:2493	si_a318	TRINITY_DN2513_c0_g2	2482	2502	2493	-22.50	-17.00	0.755555555555556	6	2-12,2501-2491;15-20,2488-2483	1-1,2502-2502[UP5];13-14,2490-2489[SIL];21-21,2482-2482[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	UUAAAAAUCUCAUGGGUAGAA&AUUUAUCCAUGAUUUUUUUAU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2513_c0_g2_2493_TPlot.pdf
TRINITY_DN2513_c0_g2:2494	si_a317	TRINITY_DN2513_c0_g2	2483	2503	2494	-24.30	-16.90	0.695473251028807	7	3-13,2501-2491;16-21,2488-2483	1-2,2503-2502[UP5];14-15,2490-2489[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UAAAAAUCUCAUGGGUAGAAC&GAUUUAUCCAUGAUUUUUUUA	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2513_c0_g2_2494_TPlot.pdf
TRINITY_DN2513_c0_g2:2643	si_a788	TRINITY_DN2513_c0_g2	2635	2652	2643	-24.80	-16.70	0.673387096774194	6.5	1-12,2652-2641;16-20,2640-2636	13-15,x-x[BULq];21-21,2635-2635[UP3]	.(((((---((((((((((((&))))))))))))...))))).	AUGGAG---GGAAAGAUAGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.999999999970062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2513_c0_g2_2643_TPlot.pdf
TRINITY_DN2513_c0_g2:2644	si_a787	TRINITY_DN2513_c0_g2	2636	2653	2644	-26.30	-19.70	0.749049429657795	5	1-13,2653-2641;17-21,2640-2636	14-16,x-x[BULq]	(((((---(((((((((((((&)))))))))))))...)))))	UGGAG---GGAAAGAUAGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2513_c0_g2_2644_TPlot.pdf
TRINITY_DN2513_c0_g2:2647	si_s75	TRINITY_DN2513_c0_g2	2636	2656	2647	-24.00	-17.10	0.7125	10	3-8,2654-2649;10-20,2647-2637	1-2,2656-2655[UP5];9-9,2648-2648[SIL];21-21,2636-2636[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGGAGGGAAAGAUAGAAGGCA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999999554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2513_c0_g2_2647_TPlot.pdf
TRINITY_DN2513_c0_g2:2648	si_s74	TRINITY_DN2513_c0_g2	2637	2657	2648	-25.00	-17.90	0.716	8	1-2,2657-2656;4-9,2654-2649;11-21,2647-2637	3-3,2655-2655[SIL];10-10,2648-2648[SIL]	(((((((((((.((((((.((&)).)))))).)))))))))))	GGAGGGAAAGAUAGAAGGCAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999986946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2513_c0_g2_2648_TPlot.pdf
TRINITY_DN2513_c0_g2:2649	si_s73	TRINITY_DN2513_c0_g2	2638	2658	2649	-24.00	-17.20	0.716666666666667	8	1-3,2658-2656;5-10,2654-2649;12-21,2647-2638	4-4,2655-2655[SIL];11-11,2648-2648[SIL]	((((((((((.((((((.(((&))).)))))).))))))))))	GAGGGAAAGAUAGAAGGCAGA&UCUAUUUUUUUUCUUUCCUUU	2	0.999999998333509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2513_c0_g2_2649_TPlot.pdf
TRINITY_DN2513_c0_g2:2650	si_s72	TRINITY_DN2513_c0_g2	2639	2659	2650	-24.10	-16.00	0.663900414937759	8.5	2-4,2658-2656;6-11,2654-2649;13-21,2647-2639	1-1,2659-2659[UP5];5-5,2655-2655[SIL];12-12,2648-2648[SIL]	(((((((((.((((((.(((.&.))).)))))).)))))))))	AGGGAAAGAUAGAAGGCAGAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2513_c0_g2_2650_TPlot.pdf
TRINITY_DN2513_c4_g1:31	si_s102	TRINITY_DN2513_c4_g1	15	40	31	-34.10	-22.82	0.669208211143695	16	1-10,40-31;12-20,24-16	11-11,30-25[AILt];21-21,15-15[UP3]	.(((((((((......((((((((((&))))))))))-----.))))))))).	UUAUUUUCCGUAGCGCUCCGGGGCGA&UCGCUUCGGA-----UUGGAAAAUAG	0	0.0445062246494602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN2513_c4_g1_31_TPlot.pdf
TRINITY_DN25142_c0_g1:3219	si_s90	TRINITY_DN25142_c0_g1	3208	3228	3219	-35.30	-24.60	0.696883852691218	5.5	1-14,3228-3215;15-17,3213-3211;19-20,3210-3209	x-x,3214-3214[BULt];18-18,x-x[BULq];21-21,3208-3208[UP3]	.((-(((.((((((((((((((&))))))))))))))-))).)).	ACG-GGCAGAAGAAGAAGAGGG&CUUUCUUCUUCUUC-GCUUCGG	2	0.99989487553627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN25142_c0_g1_3219_TPlot.pdf
TRINITY_DN25142_c0_g1:3220	si_s89	TRINITY_DN25142_c0_g1	3209	3229	3220	-35.30	-24.50	0.694050991501416	5.5	2-15,3228-3215;16-18,3213-3211;20-21,3210-3209	1-1,3229-3229[UP5];x-x,3214-3214[BULt];19-19,x-x[BULq]	((-(((.((((((((((((((.&.))))))))))))))-))).))	CG-GGCAGAAGAAGAAGAGGGA&CCUUUCUUCUUCUUC-GCUUCG	4	0.999999971123102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN25142_c0_g1_3220_TPlot.pdf
TRINITY_DN25142_c0_g1:3223	si_s86	TRINITY_DN25142_c0_g1	3211	3231	3223	-32.90	-24.60	0.747720364741641	6	1-7,3231-3225;9-18,3224-3215;19-21,3213-3211	8-8,x-x[BULq];x-x,3214-3214[BULt]	(((.((((((((((-(((((((&))))))).))))))))))-)))	GGCAGAAGAAGAAG-AGGGAGG&UUUCCUUUCUUCUUCUUC-GCU	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN25142_c0_g1_3223_TPlot.pdf
TRINITY_DN25142_c0_g1:3263	si_s73	TRINITY_DN25142_c0_g1	3250	3272	3263	-24.00	-16.50	0.6875	6.5	1-11,3272-3262;12-13,3260-3259;15-21,3256-3250	x-x,3261-3261[BULt];14-14,3258-3257[AILt]	(((((((..((.(((((((((((&)))))))))))-))-.)))))))	GAAGGAAUUGAUAAAGAAAUGGA&UCUAUUUUUUU-UC-UUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN25142_c0_g1_3263_TPlot.pdf
TRINITY_DN25143_c0_g2:1019	si_s823	TRINITY_DN25143_c0_g2	1008	1028	1019	-22.20	-14.90	0.671171171171171	7	1-5,1028-1024;8-18,1021-1011	6-7,1023-1022[SIL];19-21,1010-1008[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	AUGUGUUUUUCAUUUAUAAGA&UCUUAAUAAUGAAAAACAAUU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN25143_c0_g2_1019_TPlot.pdf
TRINITY_DN25143_c0_g2:1020	si_s822	TRINITY_DN25143_c0_g2	1009	1029	1020	-22.30	-15.00	0.672645739910314	7	2-6,1028-1024;9-19,1021-1011	1-1,1029-1029[UP5];7-8,1023-1022[SIL];20-21,1010-1009[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	UGUGUUUUUCAUUUAUAAGAC&UUCUUAAUAAUGAAAAACAAU	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN25143_c0_g2_1020_TPlot.pdf
TRINITY_DN25143_c0_g2:1021	si_s821	TRINITY_DN25143_c0_g2	1010	1030	1021	-22.20	-15.00	0.675675675675676	8	3-7,1028-1024;10-20,1021-1011	1-2,1030-1029[UP5];8-9,1023-1022[SIL];21-21,1010-1010[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	GUGUUUUUCAUUUAUAAGACA&UUUCUUAAUAAUGAAAAACAA	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN25143_c0_g2_1021_TPlot.pdf
TRINITY_DN2514_c0_g1:1683	si_a415	TRINITY_DN2514_c0_g1	1670	1692	1683	-18.10	-11.80	0.651933701657459	7.5	4-15,1689-1678;16-21,1675-1670	1-3,1692-1690[UP5];x-x,1677-1676[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	CUAUAUCUUUGUUUAAAUAUUAA&UUUAUAUUUAAAUAA--AUAUAG	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN2514_c0_g1_1683_TPlot.pdf
TRINITY_DN2514_c0_g1:1943	si_a450	TRINITY_DN2514_c0_g1	1932	1952	1943	-25.20	-16.60	0.658730158730159	6	2-5,1951-1948;7-18,1946-1935	1-1,1952-1952[UP5];6-6,1947-1947[SIL];19-21,1934-1932[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UCCUAUAACAACAAUAAUCUA&GAGAUAAUUGUUGUUAUAUAU	2	0.997392228208699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN2514_c0_g1_1943_TPlot.pdf
TRINITY_DN2514_c0_g1:2475	si_s716	TRINITY_DN2514_c0_g1	2459	2484	2475	-31.70	-21.00	0.662460567823344	7	1-11,2484-2474;12-13,2472-2471;14-21,2466-2459	x-x,2473-2473[BULt];x-x,2470-2467[BULt]	((((((((....((.(((((((((((&)))))))))))-))----))))))))	AGAUAAUAUAGAUCGUUUUCCUGUUC&GAACAGGGAAA-GA----UAUUAUCU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s716_TRINITY_DN2514_c0_g1_2475_TPlot.pdf
TRINITY_DN2514_c0_g1:2485	si_s706	TRINITY_DN2514_c0_g1	2474	2494	2485	-29.40	-20.90	0.710884353741497	4.5	1-9,2494-2486;11-21,2484-2474	10-10,2485-2485[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UUUUCCUGUUCUUUAGUAAAU&AUUUAUUAGUGAACAGGGAAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN2514_c0_g1_2485_TPlot.pdf
TRINITY_DN2514_c0_g1:4052	si_s8	TRINITY_DN2514_c0_g1	4041	4062	4052	-21.30	-17.10	0.802816901408451	5	1-9,4062-4054;10-19,4052-4043	x-x,4053-4053[BULt];20-21,4042-4041[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	UUUAUAGUAAUAUAUAAGUAGU&AUUACUUAU-UAUUACUAUAUU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN2514_c0_g1_4052_TPlot.pdf
TRINITY_DN2514_c0_g1:4058	si_s3	TRINITY_DN2514_c0_g1	4046	4067	4058	-21.20	-14.20	0.669811320754717	9	5-14,4063-4054;15-21,4052-4046	1-4,4067-4064[UP5];x-x,4053-4053[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	AGUAAUAUAUAAGUAGUACAGC&UUUAUAUUACUUAU-UAUUACU	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2514_c0_g1_4058_TPlot.pdf
TRINITY_DN2514_c0_g1:4905	si_s448	TRINITY_DN2514_c0_g1	4894	4914	4905	-23.00	-15.10	0.656521739130435	10	6-17,4909-4898;19-21,4896-4894	1-5,4914-4910[UP5];18-18,4897-4897[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GAUUAUUGUUGUUAUAGGAAC&UUAUAUAUAACAACAAUUAUC	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN2514_c0_g1_4905_TPlot.pdf
TRINITY_DN2514_c0_g1:4906	si_s422	TRINITY_DN2514_c0_g1	4894	4915	4906	-21.30	-15.20	0.713615023474178	9.5	4-10,4912-4906;11-21,4904-4894	1-3,4915-4913[UP5];x-x,4905-4905[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GAUUAUUGUUGUUAUAGGAACU&AUAUUCUAUA-UAACAAUAAUU	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2514_c0_g1_4906_TPlot.pdf
TRINITY_DN2514_c0_g2:4370	si_a142	TRINITY_DN2514_c0_g2	4359	4379	4370	-23.50	-16.60	0.706382978723404	14	7-19,4373-4361	1-6,4379-4374[UP5];20-21,4360-4359[UP3]	..(((((((((((((......&......)))))))))))))..	CGAAAACAACGACGAGAAGAA&AAUUAAUCGUUGUUGUUUUAA	3	0.99999280884472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2514_c0_g2_4370_TPlot.pdf
TRINITY_DN2514_c0_g3:1151	si_a720	TRINITY_DN2514_c0_g3	1141	1160	1151	-35.30	-23.90	0.677053824362606	9	4-11,1157-1150;13-21,1149-1141	1-3,1160-1158[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AGAUGCUUG-GUGACGAUGAU&AUAAUCGUUACUCGGGCAUCU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN2514_c0_g3_1151_TPlot.pdf
TRINITY_DN2514_c1_g1:808	si_s185	TRINITY_DN2514_c1_g1	799	817	808	-33.30	-25.70	0.771771771771772	3	1-14,817-804;17-21,803-799	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	UCGAA--AAUCGUUACUCGGG&CCCGAGUAACGAUUAUUUUGG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s185_TRINITY_DN2514_c1_g1_808_TPlot.pdf
TRINITY_DN2514_c1_g1:809	si_s184	TRINITY_DN2514_c1_g1	798	818	809	-33.40	-24.70	0.739520958083832	7	2-15,817-804	1-1,818-818[UP5];16-21,803-798[UP3]	......((((((((((((((.&.))))))))))))))......	CUCGAAAAUCGUUACUCGGGG&GCCCGAGUAACGAUUAUUUUG	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN2514_c1_g1_809_TPlot.pdf
TRINITY_DN2514_c1_g1:890	si_s187	TRINITY_DN2514_c1_g1	882	899	890	-29.60	-20.54	0.693918918918919	7	1-10,899-890;15-20,888-883	11-14,889-889[AILq];21-21,882-882[UP3]	.((((((.---((((((((((&))))))))))....)))))).	CUCCAAAC---UCGUUACUCG&CGAGUAACGAUUAUUUUGGAA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s187_TRINITY_DN2514_c1_g1_890_TPlot.pdf
TRINITY_DN2514_c1_g1:891	si_s186	TRINITY_DN2514_c1_g1	883	900	891	-31.90	-23.54	0.737931034482759	5	1-11,900-890;16-21,888-883	12-15,889-889[AILq]	((((((.---(((((((((((&)))))))))))....))))))	UCCAAAC---UCGUUACUCGG&CCGAGUAACGAUUAUUUUGGA	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN2514_c1_g1_891_TPlot.pdf
TRINITY_DN2514_c1_g1:893	si_s184	TRINITY_DN2514_c1_g1	882	902	893	-33.40	-22.50	0.673652694610778	9	2-13,901-890	1-1,902-902[UP5];14-21,889-882[UP3]	........((((((((((((.&.))))))))))))........	CUCCAAACUCGUUACUCGGGG&GCCCGAGUAACGAUUAUUUUG	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN2514_c1_g1_893_TPlot.pdf
TRINITY_DN2514_c1_g2:1471	si_s186	TRINITY_DN2514_c1_g2	1463	1480	1471	-31.90	-23.54	0.737931034482759	5	1-11,1480-1470;16-21,1468-1463	12-15,1469-1469[AILq]	((((((.---(((((((((((&)))))))))))....))))))	UCCAAAC---UCGUUACUCGG&CCGAGUAACGAUUAUUUUGGA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN2514_c1_g2_1471_TPlot.pdf
TRINITY_DN2514_c1_g2:1473	si_s184	TRINITY_DN2514_c1_g2	1462	1482	1473	-33.40	-22.50	0.673652694610778	9	2-13,1481-1470	1-1,1482-1482[UP5];14-21,1469-1462[UP3]	........((((((((((((.&.))))))))))))........	CUCCAAACUCGUUACUCGGGG&GCCCGAGUAACGAUUAUUUUG	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN2514_c1_g2_1473_TPlot.pdf
TRINITY_DN2514_c1_g2:1476	si_s181	TRINITY_DN2514_c1_g2	1465	1485	1476	-34.60	-25.20	0.728323699421965	8.5	1-3,1485-1483;5-16,1481-1470	4-4,1482-1482[SIL];17-21,1469-1465[UP3]	.....((((((((((((.(((&))).)))))))))))).....	CAAACUCGUUACUCGGGGGUU&GAUGCCCGAGUAACGAUUAUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN2514_c1_g2_1476_TPlot.pdf
TRINITY_DN2514_c1_g2:1481	si_s176	TRINITY_DN2514_c1_g2	1470	1490	1481	-36.70	-26.80	0.730245231607629	9	4-8,1487-1483;10-21,1481-1470	1-3,1490-1488[UP5];9-9,1482-1482[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UCGUUACUCGGGGGUUUUCGG&GUAAAGAUGCCCGAGUAACGA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s176_TRINITY_DN2514_c1_g2_1481_TPlot.pdf
TRINITY_DN2514_c2_g1:1035	si_a446	TRINITY_DN2514_c2_g1	1024	1044	1035	-25.50	-20.20	0.792156862745098	10	5-19,1040-1026	1-4,1044-1041[UP5];20-21,1025-1024[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAACAACAAUUGUCUCUCCU&AUAUGAGAUAAUUGUUGUUAU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN2514_c2_g1_1035_TPlot.pdf
TRINITY_DN2514_c2_g1:1039	si_a442	TRINITY_DN2514_c2_g1	1028	1045	1039	-29.30	-19.70	0.672354948805461	9.5	3-5,1043-1041;9-21,1040-1028	1-2,1045-1044[UP5];6-8,x-x[BULq]	(((((((((((((---(((..&..)))...)))))))))))))	CAACAAUUGUCUC---UCCUA&UUGGAUAUGAGAUAAUUGUUG	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN2514_c2_g1_1039_TPlot.pdf
TRINITY_DN2514_c3_g1:645	si_a448	TRINITY_DN2514_c3_g1	634	655	645	-25.50	-16.90	0.662745098039216	6	1-7,655-649;8-18,647-637	x-x,648-648[BULt];19-21,636-634[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	UGUUAACAACAAUUAAUUUCAU&AUGAGAU-AAUUGUUGUUAUAU	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN2514_c3_g1_645_TPlot.pdf
TRINITY_DN2514_c3_g1:646	si_a447	TRINITY_DN2514_c3_g1	635	656	646	-25.70	-16.90	0.657587548638132	6	2-8,655-649;9-19,647-637	1-1,656-656[UP5];x-x,648-648[BULt];20-21,636-635[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	GUUAACAACAAUUAAUUUCAUU&UAUGAGAU-AAUUGUUGUUAUA	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN2514_c3_g1_646_TPlot.pdf
TRINITY_DN2514_c4_g1:299	si_a722	TRINITY_DN2514_c4_g1	289	308	299	-34.70	-24.30	0.70028818443804	3	1-14,308-295;18-21,292-289	15-17,294-293[AILq]	((((..-((((((((((((((&))))))))))))))...))))	AAAGCC-CCCGAGUAACGAUU&AAUCGUUACUCGGGCAUCUUU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN2514_c4_g1_299_TPlot.pdf
TRINITY_DN2514_c4_g1:300	si_a721	TRINITY_DN2514_c4_g1	289	309	300	-35.10	-23.50	0.66951566951567	7	2-15,308-295	1-1,309-309[UP5];16-21,294-289[UP3]	......((((((((((((((.&.))))))))))))))......	AAAGCCCCCGAGUAACGAUUU&UAAUCGUUACUCGGGCAUCUU	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN2514_c4_g1_300_TPlot.pdf
TRINITY_DN2514_c4_g1:302	si_a719	TRINITY_DN2514_c4_g1	291	311	302	-34.60	-23.50	0.679190751445087	9	4-17,308-295	1-3,311-309[UP5];18-21,294-291[UP3]	....((((((((((((((...&...))))))))))))))....	AGCCCCCGAGUAACGAUUUCC&AAUAAUCGUUACUCGGGCAUC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN2514_c4_g1_302_TPlot.pdf
TRINITY_DN2514_c4_g1:303	si_a718	TRINITY_DN2514_c4_g1	292	312	303	-32.60	-23.50	0.720858895705521	10	5-18,308-295	1-4,312-309[UP5];19-21,294-292[UP3]	...((((((((((((((....&....))))))))))))))...	GCCCCCGAGUAACGAUUUCCG&AAAUAAUCGUUACUCGGGCAU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN2514_c4_g1_303_TPlot.pdf
TRINITY_DN2514_c4_g1:305	si_a716	TRINITY_DN2514_c4_g1	294	314	305	-33.40	-23.50	0.703592814371258	12	7-20,308-295	1-6,314-309[UP5];21-21,294-294[UP3]	.((((((((((((((......&......)))))))))))))).	CCCCGAGUAACGAUUUCCGAG&CAAAAUAAUCGUUACUCGGGC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN2514_c4_g1_305_TPlot.pdf
TRINITY_DN2514_c4_g1:306	si_a715	TRINITY_DN2514_c4_g1	295	315	306	-33.30	-23.50	0.705705705705706	13	8-21,308-295	1-7,315-309[UP5]	((((((((((((((.......&.......))))))))))))))	CCCGAGUAACGAUUUCCGAGC&CCAAAAUAAUCGUUACUCGGG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a715_TRINITY_DN2514_c4_g1_306_TPlot.pdf
TRINITY_DN25151_c0_g1:2488	si_s27	TRINITY_DN25151_c0_g1	2477	2497	2488	-27.00	-20.30	0.751851851851852	6	2-13,2496-2485;15-21,2483-2477	1-1,2497-2497[UP5];14-14,2484-2484[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UAAGGGUGUGGUUGCAGUUAC&UUGAUUGCAACUAAAUCUUUA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN25151_c0_g1_2488_TPlot.pdf
TRINITY_DN25166_c0_g1:148	si_a168	TRINITY_DN25166_c0_g1	137	165	148	-34.40	-23.00	0.668604651162791	19	2-6,164-160;7-21,151-137	1-1,165-165[UP5];x-x,159-152[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUUUGGAUGGGUGACCGAGUUCAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN25166_c0_g1_148_TPlot.pdf
TRINITY_DN25179_c3_g1:18	si_a474	TRINITY_DN25179_c3_g1	7	28	18	-23.60	-16.10	0.682203389830509	9	1-7,28-22;9-20,19-8	8-8,21-20[AILt];21-21,7-7[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	GCUAUGUGACAAUUUGUUAUGU&AUGUAAU-UAUUGUUAUAUAGA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN25179_c3_g1_18_TPlot.pdf
TRINITY_DN25179_c3_g1:19	si_a473	TRINITY_DN25179_c3_g1	8	29	19	-23.00	-17.20	0.747826086956522	8	1-8,29-22;10-21,19-8	9-9,21-20[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	CUAUGUGACAAUUUGUUAUGUA&UAUGUAAU-UAUUGUUAUAUAG	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN25179_c3_g1_19_TPlot.pdf
TRINITY_DN25179_c3_g1:20	si_s428	TRINITY_DN25179_c3_g1	8	29	20	-21.50	-14.02	0.652093023255814	9.5	1-10,29-20;14-20,15-9	11-13,19-16[AILt];21-21,8-8[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	CUAUGUGACAAUUUGUUAUGUA&UAUAUAACAA-UAAUUACAUAU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN25179_c3_g1_20_TPlot.pdf
TRINITY_DN2517_c0_g1:1670	si_a893	TRINITY_DN2517_c0_g1	1659	1679	1670	-21.70	-14.30	0.658986175115207	7	1-4,1679-1676;6-17,1674-1663	5-5,1675-1675[SIL];18-21,1662-1659[UP3]	....((((((((((((.((((&)))).))))))))))))....	UUAAACUUAUUAUUACCAUGU&AUAUAGUAAUAAUAAGUAAUA	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN2517_c0_g1_1670_TPlot.pdf
TRINITY_DN2517_c0_g1:1671	si_a892	TRINITY_DN2517_c0_g1	1660	1680	1671	-21.30	-14.50	0.68075117370892	7	2-5,1679-1676;7-18,1674-1663	1-1,1680-1680[UP5];6-6,1675-1675[SIL];19-21,1662-1660[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UAAACUUAUUAUUACCAUGUA&AAUAUAGUAAUAAUAAGUAAU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN2517_c0_g1_1671_TPlot.pdf
TRINITY_DN25180_c3_g1:118	si_a469	TRINITY_DN25180_c3_g1	107	127	118	-21.10	-14.30	0.677725118483412	11	4-10,124-118;13-21,115-107	1-3,127-125[UP5];11-12,117-116[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	AUGACAGUAUAUGCAUAUACG&AUAAUAUGUAAUUAUUGUUAU	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN25180_c3_g1_118_TPlot.pdf
TRINITY_DN25182_c0_g1:193	si_a68	TRINITY_DN25182_c0_g1	185	202	193	-25.40	-17.00	0.669291338582677	7	1-10,202-193;14-21,192-185	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	UGAGAAAU---UUGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999985793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN25182_c0_g1_193_TPlot.pdf
TRINITY_DN2518_c0_g1:2094	si_a32	TRINITY_DN2518_c0_g1	2083	2103	2094	-35.90	-23.40	0.651810584958217	10.5	4-17,2100-2087	1-3,2103-2101[UP5];18-21,2086-2083[UP3]	....((((((((((((((...&...))))))))))))))....	UUGGGCCGGUUUUAGAACAGC&UUAGUUCUAAGACCGGUAGGU	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN2518_c0_g1_2094_TPlot.pdf
TRINITY_DN2518_c0_g1:2096	si_a30	TRINITY_DN2518_c0_g1	2085	2105	2096	-32.70	-23.40	0.715596330275229	12	6-19,2100-2087	1-5,2105-2101[UP5];20-21,2086-2085[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGGCCGGUUUUAGAACAGCAA&UUUUAGUUCUAAGACCGGUAG	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a30_TRINITY_DN2518_c0_g1_2096_TPlot.pdf
TRINITY_DN2518_c0_g1:2097	si_a29	TRINITY_DN2518_c0_g1	2086	2106	2097	-31.00	-23.40	0.754838709677419	13	7-20,2100-2087	1-6,2106-2101[UP5];21-21,2086-2086[UP3]	.((((((((((((((......&......)))))))))))))).	GGCCGGUUUUAGAACAGCAAG&UUUUUAGUUCUAAGACCGGUA	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN2518_c0_g1_2097_TPlot.pdf
TRINITY_DN2518_c0_g1:2098	si_a28	TRINITY_DN2518_c0_g1	2087	2107	2098	-30.70	-23.00	0.749185667752443	14	8-21,2100-2087	1-7,2107-2101[UP5]	((((((((((((((.......&.......))))))))))))))	GCCGGUUUUAGAACAGCAAGG&AUUUUUAGUUCUAAGACCGGU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN2518_c0_g1_2098_TPlot.pdf
TRINITY_DN2518_c0_g1:2099	si_a27	TRINITY_DN2518_c0_g1	2088	2108	2099	-30.30	-21.40	0.706270627062706	15.5	9-21,2100-2088	1-8,2108-2101[UP5]	(((((((((((((........&........)))))))))))))	CCGGUUUUAGAACAGCAAGGA&UAUUUUUAGUUCUAAGACCGG	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN2518_c0_g1_2099_TPlot.pdf
TRINITY_DN2518_c0_g1:2105	si_a142	TRINITY_DN2518_c0_g1	2094	2114	2105	-23.50	-15.40	0.65531914893617	14	7-8,2108-2107;10-21,2105-2094	1-6,2114-2109[UP5];9-9,2106-2106[SIL]	((((((((((((.((......&......)).))))))))))))	UUAGAACAGCAAGGACAAAUG&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999976677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2518_c0_g1_2105_TPlot.pdf
TRINITY_DN2518_c0_g1:662	si_s69	TRINITY_DN2518_c0_g1	650	671	662	-23.40	-17.20	0.735042735042735	4.5	1-13,671-659;16-21,655-650	14-15,658-656[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	GAAAGGCUCAAAAAUAGGAGUU&AACUUCUAUUUUU-UUUCUUUC	4	0.999999999808535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2518_c0_g1_662_TPlot.pdf
TRINITY_DN2518_c0_g1:663	si_s68	TRINITY_DN2518_c0_g1	651	672	663	-23.10	-16.80	0.727272727272727	4.5	1-14,672-659;17-21,655-651	15-16,658-656[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	AAAGGCUCAAAAAUAGGAGUUG&CAACUUCUAUUUUU-UUUCUUU	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2518_c0_g1_663_TPlot.pdf
TRINITY_DN251_c0_g1:1153	si_s79	TRINITY_DN251_c0_g1	1142	1162	1153	-26.20	-17.80	0.679389312977099	7.5	1-14,1162-1149;16-18,1147-1145	15-15,1148-1148[SIL];19-21,1144-1142[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	UCCGAGCAAGGAGAGAAAGGA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN251_c0_g1_1153_TPlot.pdf
TRINITY_DN251_c0_g1:1154	si_s78	TRINITY_DN251_c0_g1	1143	1163	1154	-26.20	-18.50	0.706106870229008	6.5	1-15,1163-1149;17-19,1147-1145	16-16,1148-1148[SIL];20-21,1144-1143[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	CCGAGCAAGGAGAGAAAGGAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN251_c0_g1_1154_TPlot.pdf
TRINITY_DN251_c0_g1:1155	si_s87	TRINITY_DN251_c0_g1	1145	1163	1155	-32.90	-22.70	0.689969604863222	4	1-9,1163-1155;11-16,1154-1149;18-21,1148-1145	10-10,x-x[BULq];17-17,x-x[BULq]	((((-((((((-(((((((((&))))))))).)))))).))))	GAGC-AAGGAG-AGAAAGGAA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN251_c0_g1_1155_TPlot.pdf
TRINITY_DN251_c0_g1:1156	si_s76	TRINITY_DN251_c0_g1	1145	1165	1156	-23.60	-18.60	0.788135593220339	7.5	3-17,1163-1149;19-21,1147-1145	1-2,1165-1164[UP5];18-18,1148-1148[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GAGCAAGGAGAGAAAGGAACG&AUUUUUUUUCUUUCCUUUCUU	2	0.999995490125337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN251_c0_g1_1156_TPlot.pdf
TRINITY_DN251_c0_g1:1158	si_s74	TRINITY_DN251_c0_g1	1147	1167	1158	-25.00	-16.40	0.656	11.5	5-19,1163-1149	1-4,1167-1164[UP5];20-21,1148-1147[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCAAGGAGAGAAAGGAACGUA&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN251_c0_g1_1158_TPlot.pdf
TRINITY_DN251_c0_g1:1159	si_s73	TRINITY_DN251_c0_g1	1148	1170	1159	-24.00	-16.70	0.695833333333333	8.5	1-3,1170-1168;4-5,1166-1165;6-20,1163-1149	x-x,1167-1167[BULt];x-x,1164-1164[BULt];21-21,1148-1148[UP3]	.(((((((((((((((.((.(((&)))-))-))))))))))))))).	CAAGGAGAGAAAGGAACGUAAGA&UCU-AU-UUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN251_c0_g1_1159_TPlot.pdf
TRINITY_DN251_c0_g1:1161	si_s71	TRINITY_DN251_c0_g1	1150	1171	1161	-25.70	-17.10	0.665369649805448	8.5	1-3,1171-1169;5-7,1167-1165;8-21,1163-1150	4-4,1168-1168[SIL];x-x,1164-1164[BULt]	((((((((((((((.(((.(((&))).)))-))))))))))))))	AGGAGAGAAAGGAACGUAAGAG&CUUCUAU-UUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN251_c0_g1_1161_TPlot.pdf
TRINITY_DN251_c0_g1:1162	si_s70	TRINITY_DN251_c0_g1	1151	1172	1162	-25.80	-17.60	0.682170542635659	8.5	1-4,1172-1169;6-8,1167-1165;9-21,1163-1151	5-5,1168-1168[SIL];x-x,1164-1164[BULt]	(((((((((((((.(((.((((&)))).)))-)))))))))))))	GGAGAGAAAGGAACGUAAGAGU&ACUUCUAU-UUUUUUUCUUUCC	2	0.999999999940682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN251_c0_g1_1162_TPlot.pdf
TRINITY_DN251_c0_g1:2002	si_s508	TRINITY_DN251_c0_g1	1991	2011	2002	-22.80	-15.10	0.662280701754386	10	4-10,2008-2002;12-19,2000-1993	1-3,2011-2009[UP5];11-11,2001-2001[SIL];20-21,1992-1991[UP3]	..((((((((.(((((((...&...))))))).))))))))..	GAUAAGAAUGAAGAAUUGGAU&AAACAAUUCUAUAUUCUUAAU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN251_c0_g1_2002_TPlot.pdf
TRINITY_DN251_c0_g1:2231	si_s811	TRINITY_DN251_c0_g1	2220	2239	2231	-26.40	-17.40	0.659090909090909	6.5	1-8,2239-2232;10-20,2231-2221	9-9,x-x[BULq];21-21,2220-2220[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	AUGUUGGGAAAA-GUGAUGAA&UUCGUUACCUUUUCUUAAUAA	3	0.999999855462075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN251_c0_g1_2231_TPlot.pdf
TRINITY_DN251_c0_g1:2233	si_s808	TRINITY_DN251_c0_g1	2223	2242	2233	-28.60	-19.30	0.674825174825175	6	2-11,2241-2232;13-21,2231-2223	1-1,2242-2242[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	UUGGGAAAA-GUGAUGAAGAA&AUCUUCGUUACCUUUUCUUAA	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN251_c0_g1_2233_TPlot.pdf
TRINITY_DN251_c0_g1:3027	si_s808	TRINITY_DN251_c0_g1	3016	3036	3027	-28.60	-20.10	0.702797202797203	7	1-3,3036-3034;5-15,3032-3022;17-19,3020-3018	4-4,3033-3033[SIL];16-16,3021-3021[SIL];20-21,3017-3016[UP3]	..(((.(((((((((((.(((&))).))))))))))).)))..	GAAGGUGAAGGUAGCGAUGAU&AUCUUCGUUACCUUUUCUUAA	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN251_c0_g1_3027_TPlot.pdf
TRINITY_DN251_c0_g1:3095	si_s70	TRINITY_DN251_c0_g1	3084	3103	3095	-25.80	-17.90	0.693798449612403	6.5	3-6,3101-3098;8-21,3097-3084	1-2,3103-3102[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAAAGGAAGAAAA-AGAAAG&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999999928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN251_c0_g1_3095_TPlot.pdf
TRINITY_DN2520_c0_g1:2468	si_s92	TRINITY_DN2520_c0_g1	2449	2477	2468	-34.90	-23.30	0.667621776504298	14.5	1-15,2477-2463;16-19,2454-2451	x-x,2462-2455[BULt];20-21,2450-2449[UP3]	..((((........(((((((((((((((&)))))))))))))))--------))))..	UACCGAACGAGAACGGUGAGGAGGAGGAG&UUCUUCUUCUUCGCU--------UCGGAU	2	0.999999911673373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2520_c0_g1_2468_TPlot.pdf
TRINITY_DN2520_c0_g1:2470	si_s90	TRINITY_DN2520_c0_g1	2451	2479	2470	-35.30	-23.90	0.677053824362606	15	2-17,2478-2463;18-21,2454-2451	1-1,2479-2479[UP5];x-x,2462-2455[BULt]	((((........((((((((((((((((.&.))))))))))))))))--------))))	CCGAACGAGAACGGUGAGGAGGAGGAGGC&CUUUCUUCUUCUUCGCU--------UCGG	2	0.99999970460364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2520_c0_g1_2470_TPlot.pdf
TRINITY_DN2520_c0_g1:2525	si_s489	TRINITY_DN2520_c0_g1	2513	2534	2525	-17.90	-13.50	0.754189944134078	6.5	3-15,2532-2520;16-21,2518-2513	1-2,2534-2533[UP5];x-x,2519-2519[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	UUUGUUAUGUAUUUAAGUGAUC&AUUUAUUUAAAUAUA-AACAAA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN2520_c0_g1_2525_TPlot.pdf
TRINITY_DN2520_c0_g1:655	si_s72	TRINITY_DN2520_c0_g1	643	668	655	-24.10	-16.00	0.663900414937759	12.5	1-9,668-660;10-18,655-647;19-21,645-643	x-x,659-656[BULt];x-x,646-646[BULt]	(((.(((((((((....(((((((((&)))))))))----)))))))))-)))	AAGAGAAGGAAAAUGACGAGAUGGAA&UUCUAUUUU----UUUUCUUUC-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2520_c0_g1_655_TPlot.pdf
TRINITY_DN2521_c0_g1:1162	si_s12	TRINITY_DN2521_c0_g1	1151	1171	1162	-22.80	-16.00	0.701754385964912	10	1-7,1171-1165;9-18,1163-1154	8-8,1164-1164[SIL];19-21,1153-1151[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UCACGAUGUGGUGCUAGUAGG&CUUAUUAUUACUAUAUUGAUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN2521_c0_g1_1162_TPlot.pdf
TRINITY_DN2521_c0_g1:1163	si_s11	TRINITY_DN2521_c0_g1	1152	1172	1163	-23.60	-16.00	0.677966101694915	9.5	2-8,1171-1165;10-19,1163-1154	1-1,1172-1172[UP5];9-9,1164-1164[SIL];20-21,1153-1152[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	CACGAUGUGGUGCUAGUAGGA&ACUUAUUAUUACUAUAUUGAU	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN2521_c0_g1_1163_TPlot.pdf
TRINITY_DN2521_c0_g1:2042	si_a328	TRINITY_DN2521_c0_g1	2024	2051	2042	-30.10	-23.00	0.764119601328904	19.5	1-10,2051-2042;12-21,2033-2024	11-11,2041-2034[AILt]	((((((((((........((((((((((&))))))))))-------.))))))))))	GGGACAGGGACCAAAAGUUGAAGAAGUC&GAUUUUUUUA-------UUCCUUGUCCC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2521_c0_g1_2042_TPlot.pdf
TRINITY_DN2521_c0_g1:719	si_a759	TRINITY_DN2521_c0_g1	708	729	719	-32.60	-21.60	0.662576687116564	4.5	1-8,729-722;9-16,720-713;18-21,711-708	x-x,721-721[BULt];17-17,712-712[SIL]	((((.((((((((.((((((((&))))))))-)))))))).))))	UUAGAUAAAAACCUCAAAGGAG&CUCCUUUG-GGUUUUUGAUUGA	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN2521_c0_g1_719_TPlot.pdf
TRINITY_DN2521_c0_g1:731	si_s76	TRINITY_DN2521_c0_g1	720	740	731	-23.60	-15.90	0.673728813559322	12	5-18,736-723	1-4,740-737[UP5];19-21,722-720[UP3]	...((((((((((((((....&....))))))))))))))...	CUCAAAGGAGAGAAGAACGUA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2521_c0_g1_731_TPlot.pdf
TRINITY_DN2521_c0_g1:732	si_s75	TRINITY_DN2521_c0_g1	721	741	732	-24.00	-15.90	0.6625	12.5	6-19,736-723	1-5,741-737[UP5];20-21,722-721[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCAAAGGAGAGAAGAACGUAU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2521_c0_g1_732_TPlot.pdf
TRINITY_DN2521_c0_g1:734	si_s73	TRINITY_DN2521_c0_g1	723	743	734	-24.00	-15.90	0.6625	14.5	8-21,736-723	1-7,743-737[UP5]	((((((((((((((.......&.......))))))))))))))	AAAGGAGAGAAGAACGUAUUG&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2521_c0_g1_734_TPlot.pdf
TRINITY_DN2521_c0_g1:850	si_s803	TRINITY_DN2521_c0_g1	839	859	850	-26.00	-17.80	0.684615384615385	15	7-18,853-842	1-6,859-854[UP5];19-21,841-839[UP3]	...((((((((((((......&......))))))))))))...	UUUAGGUGGCGAAGACUUUGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999991505649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2521_c0_g1_850_TPlot.pdf
TRINITY_DN2522_c0_g1:1022	si_a764	TRINITY_DN2522_c0_g1	1011	1033	1022	-28.90	-19.40	0.671280276816609	9	1-7,1033-1027;8-20,1024-1012	x-x,1026-1025[BULt];21-21,1011-1011[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	AUGAGUUAAUCGAAAAGACUCAA&UUGGGUU--UUUGAUUGAUUCAA	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2522_c0_g1_1022_TPlot.pdf
TRINITY_DN2522_c0_g1:1023	si_a763	TRINITY_DN2522_c0_g1	1012	1034	1023	-28.80	-19.30	0.670138888888889	9	2-8,1033-1027;9-21,1024-1012	1-1,1034-1034[UP5];x-x,1026-1025[BULt]	(((((((((((((..(((((((.&.)))))))--)))))))))))))	UGAGUUAAUCGAAAAGACUCAAC&UUUGGGUU--UUUGAUUGAUUCA	4	0.99999997500826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2522_c0_g1_1023_TPlot.pdf
TRINITY_DN25232_c2_g1:15	si_s744	TRINITY_DN25232_c2_g1	4	24	15	-28.90	-19.00	0.657439446366782	9	4-19,21-6	1-3,24-22[UP5];20-21,5-4[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCUUUAAGGUCGAUUUAUAAA&UGAAUAGAUUGACCUUAAAAC	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s744_TRINITY_DN25232_c2_g1_15_TPlot.pdf
TRINITY_DN25234_c0_g1:118	si_s255	TRINITY_DN25234_c0_g1	107	128	118	-29.40	-20.80	0.707482993197279	6	1-3,128-126;4-12,124-116;14-19,114-109	x-x,125-125[BULt];13-13,115-115[SIL];20-21,108-107[UP3]	..((((((.(((((((((.(((&)))-))))))))).))))))..	AAUUGAGUUAUAUAUCGGAGGA&UUC-CCGAUAUAUUACUCAAAA	0	0.015882034039459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN25234_c0_g1_118_TPlot.pdf
TRINITY_DN25234_c0_g2:19	si_s254	TRINITY_DN25234_c0_g2	8	29	19	-29.40	-25.50	0.86734693877551	4.5	1-4,29-26;5-20,24-9	x-x,25-25[BULt];21-21,8-8[UP3]	.((((((((((((((((.((((&))))-)))))))))))))))).	AUUGAGUGAUAUAUCGGAGGAA&UUUC-CCGAUAUAUUACUCAAA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN25234_c0_g2_19_TPlot.pdf
TRINITY_DN2524_c0_g1:322	si_s689	TRINITY_DN2524_c0_g1	311	331	322	-26.50	-17.60	0.664150943396226	8	2-10,330-322;12-19,320-313	1-1,331-331[UP5];11-11,321-321[SIL];20-21,312-311[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	CUGUCGAUUAUUUAGACUUAA&AUGAGUUUAAUUAGUCGAUUU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN2524_c0_g1_322_TPlot.pdf
TRINITY_DN2525_c0_g1:188	si_a822	TRINITY_DN2525_c0_g1	177	197	188	-26.20	-17.20	0.656488549618321	6	1-7,197-191;9-19,189-179	8-8,190-190[SIL];20-21,178-177[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GGUUUUUCUUUCUCUUCUUUU&AGAAGAAAGGAAAGAAAAAAA	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a822_TRINITY_DN2525_c0_g1_188_TPlot.pdf
TRINITY_DN2525_c0_g1:2483	si_a407	TRINITY_DN2525_c0_g1	2472	2492	2483	-19.80	-13.00	0.656565656565657	10.5	1-14,2492-2479	15-21,2478-2472[UP3]	.......((((((((((((((&)))))))))))))).......	GAAGUGCUAUAAACAGAGCGG&UUGUUUUGUUUAUAUUUAAAU	2	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2525_c0_g1_2483_TPlot.pdf
TRINITY_DN2525_c0_g1:2484	si_a406	TRINITY_DN2525_c0_g1	2473	2493	2484	-19.80	-14.60	0.737373737373737	10	1-15,2493-2479	16-21,2478-2473[UP3]	......(((((((((((((((&)))))))))))))))......	AAGUGCUAUAAACAGAGCGGU&AUUGUUUUGUUUAUAUUUAAA	2	0.999285307816599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2525_c0_g1_2484_TPlot.pdf
TRINITY_DN2525_c0_g1:2485	si_a405	TRINITY_DN2525_c0_g1	2474	2494	2485	-19.80	-14.80	0.747474747474748	10	2-16,2493-2479	1-1,2494-2494[UP5];17-21,2478-2474[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGUGCUAUAAACAGAGCGGUA&AAUUGUUUUGUUUAUAUUUAA	2	0.99927635706567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2525_c0_g1_2485_TPlot.pdf
TRINITY_DN2525_c0_g1:2486	si_a404	TRINITY_DN2525_c0_g1	2475	2495	2486	-21.70	-14.80	0.682027649769585	11	3-17,2493-2479	1-2,2495-2494[UP5];18-21,2478-2475[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUGCUAUAAACAGAGCGGUAU&GAAUUGUUUUGUUUAUAUUUA	2	0.999999894860536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2525_c0_g1_2486_TPlot.pdf
TRINITY_DN2525_c0_g1:2487	si_a403	TRINITY_DN2525_c0_g1	2476	2496	2487	-22.00	-14.80	0.672727272727273	12	4-18,2493-2479	1-3,2496-2494[UP5];19-21,2478-2476[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGCUAUAAACAGAGCGGUAUU&AGAAUUGUUUUGUUUAUAUUU	2	0.999999841459417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN2525_c0_g1_2487_TPlot.pdf
TRINITY_DN2525_c0_g1:2489	si_a401	TRINITY_DN2525_c0_g1	2478	2498	2489	-22.60	-14.80	0.654867256637168	14	6-20,2493-2479	1-5,2498-2494[UP5];21-21,2478-2478[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUAUAAACAGAGCGGUAUUAG&AUAGAAUUGUUUUGUUUAUAU	2	0.999999967769811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2525_c0_g1_2489_TPlot.pdf
TRINITY_DN2525_c0_g1:2553	si_s72	TRINITY_DN2525_c0_g1	2542	2563	2553	-24.10	-17.50	0.726141078838174	7	1-4,2563-2560;6-19,2557-2544	5-5,2559-2558[AILt];20-21,2543-2542[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	GUGGAAAGAAAAAAGAAAAGAA&UUCU-AUUUUUUUUCUUUCCUU	4	0.999999999999049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2525_c0_g1_2553_TPlot.pdf
TRINITY_DN2525_c0_g1:672	si_a358	TRINITY_DN2525_c0_g1	661	684	672	-29.10	-19.20	0.65979381443299	13	3-6,682-679;7-20,675-662	1-2,684-683[UP5];x-x,678-676[BULt];21-21,661-661[UP3]	.((((((((((((((...((((..&..))))---)))))))))))))).	AGGUCUGAUCAGGAUGCAAGAAAU&AAUUCU---AUUUUGAUCGGAUCA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN2525_c0_g1_672_TPlot.pdf
TRINITY_DN25276_c0_g1:606	si_s79	TRINITY_DN25276_c0_g1	595	615	606	-26.20	-18.30	0.698473282442748	9	1-8,615-608;10-13,606-603;15-21,601-595	9-9,607-607[SIL];14-14,602-602[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	GAGGGGAUGGGGUGGAAGGAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN25276_c0_g1_606_TPlot.pdf
TRINITY_DN25282_c0_g1:350	si_a451	TRINITY_DN25282_c0_g1	339	359	350	-23.60	-15.50	0.656779661016949	7	1-18,359-342	19-21,341-339[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUGAUGUGAUAAUAAUUAUUU&AGAUAAUUGUUGUUAUAUAUA	1	0.127166549020892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN25282_c0_g1_350_TPlot.pdf
TRINITY_DN25283_c0_g1:271	si_a585	TRINITY_DN25283_c0_g1	260	280	271	-31.60	-21.90	0.693037974683544	8	3-17,278-264	1-2,280-279[UP5];18-21,263-260[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGUAUGUCCUUUUUGUUACUU&UUGUAACAAGAAGGACAGAAU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN25283_c0_g1_271_TPlot.pdf
TRINITY_DN25284_c0_g1:878	si_s1	TRINITY_DN25284_c0_g1	867	887	878	-18.70	-12.90	0.689839572192513	12	5-18,883-870	1-4,887-884[UP5];19-21,869-867[UP3]	...((((((((((((((....&....))))))))))))))...	UUUUAAUAAGUGGUAUAUUAA&UUUUUAUAUUACUUAUUAUUA	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN25284_c0_g1_878_TPlot.pdf
TRINITY_DN25287_c0_g1:269	si_s68	TRINITY_DN25287_c0_g1	258	278	269	-23.10	-15.30	0.662337662337662	12	6-21,273-258	1-5,278-274[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGAAGAAGAAUAGGCAAAU&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN25287_c0_g1_269_TPlot.pdf
TRINITY_DN2528_c0_g1:674	si_a884	TRINITY_DN2528_c0_g1	663	683	674	-25.60	-17.40	0.6796875	6	1-10,683-674;13-21,671-663	11-12,673-672[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	UUGUUAUUACUUUGAUUGUAA&UUGCAAUCAAUAUAGUAAUAA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN2528_c0_g1_674_TPlot.pdf
TRINITY_DN25295_c0_g1:1524	si_a636	TRINITY_DN25295_c0_g1	1513	1539	1524	-26.30	-17.90	0.680608365019011	15.5	1-8,1539-1532;9-20,1525-1514	x-x,1531-1526[BULt];21-21,1513-1513[UP3]	.((((((((((((......((((((((&))))))))------)))))))))))).	CAUUAUUCAAAAGGCACUUGAUCGACA&UGUCGAUU------UUUUUGAGUAAUA	2	0.999715470504334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN25295_c0_g1_1524_TPlot.pdf
TRINITY_DN2529_c0_g2:1729	si_a232	TRINITY_DN2529_c0_g2	1718	1738	1729	-28.20	-20.10	0.712765957446809	5	2-14,1737-1725;16-20,1723-1719	1-1,1738-1738[UP5];15-15,1724-1724[SIL];21-21,1718-1718[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UAUCGAUUUGGUUGUAGAAAA&GUUUCUAUAAUCAAUUCGAUC	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN2529_c0_g2_1729_TPlot.pdf
TRINITY_DN2529_c0_g2:2124	si_a410	TRINITY_DN2529_c0_g2	2113	2133	2124	-17.80	-11.70	0.657303370786517	10	2-6,2132-2128;8-19,2126-2115	1-1,2133-2133[UP5];7-7,2127-2127[SIL];20-21,2114-2113[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CAUAUUUGGAUAUGCGCGAGU&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999899952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2529_c0_g2_2124_TPlot.pdf
TRINITY_DN2529_c0_g2:489	si_a766	TRINITY_DN2529_c0_g2	476	498	489	-30.50	-20.20	0.662295081967213	8.5	1-15,498-484;16-18,481-479	x-x,483-482[BULt];19-21,478-476[UP3]	...(((..(((((((((((((((&)))))))))))))))--)))...	ACAUGAACAUCAAUCAGGAGCCU&GGGUUUUUGAUUGAU--UCAACU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN2529_c0_g2_489_TPlot.pdf
TRINITY_DN252_c0_g1:2253	si_a455	TRINITY_DN252_c0_g1	2243	2262	2253	-21.10	-13.80	0.654028436018957	4	2-13,2261-2250;15-20,2249-2244	1-1,2262-2262[UP5];14-14,x-x[BULq];21-21,2243-2243[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	UUAUUAU-UAUAAUAACAAUG&AAUUGUUGUUAUAUAUAAUAU	3	0.999999999738819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN252_c0_g1_2253_TPlot.pdf
TRINITY_DN252_c0_g1:2258	si_a450	TRINITY_DN252_c0_g1	2247	2266	2258	-25.20	-17.30	0.686507936507937	6.5	1-6,2266-2261;8-18,2260-2250	7-7,x-x[BULq];19-21,2249-2247[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	UAUUAUAAUAACAA-UGUCUC&GAGAUAAUUGUUGUUAUAUAU	2	0.943587266821235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN252_c0_g1_2258_TPlot.pdf
TRINITY_DN252_c0_g1:2259	si_a449	TRINITY_DN252_c0_g1	2248	2267	2259	-25.70	-17.40	0.67704280155642	6.5	2-7,2266-2261;9-19,2260-2250	1-1,2267-2267[UP5];8-8,x-x[BULq];20-21,2249-2248[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	AUUAUAAUAACAA-UGUCUCG&UGAGAUAAUUGUUGUUAUAUA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN252_c0_g1_2259_TPlot.pdf
TRINITY_DN252_c0_g1:2260	si_a448	TRINITY_DN252_c0_g1	2249	2268	2260	-25.50	-17.40	0.68235294117647	7.5	3-8,2266-2261;10-20,2260-2250	1-2,2268-2267[UP5];9-9,x-x[BULq];21-21,2249-2249[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	UUAUAAUAACAA-UGUCUCGA&AUGAGAUAAUUGUUGUUAUAU	2	0.97754125916965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN252_c0_g1_2260_TPlot.pdf
TRINITY_DN252_c0_g1:2261	si_a447	TRINITY_DN252_c0_g1	2250	2269	2261	-25.70	-17.30	0.673151750972763	8.5	4-9,2266-2261;11-21,2260-2250	1-3,2269-2267[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	UAUAAUAACAA-UGUCUCGAU&UAUGAGAUAAUUGUUGUUAUA	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN252_c0_g1_2261_TPlot.pdf
TRINITY_DN252_c0_g1:476	si_a788	TRINITY_DN252_c0_g1	461	485	476	-24.80	-17.98	0.725	10	1-12,485-474;14-21,468-461	13-13,473-469[AILt]	((((((((.....((((((((((((&))))))))))))----.))))))))	UUGGAAAAAGUACAGAGAAAUAGAA&UUCUAUUUUUCU----AUUUUCCAA	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN252_c0_g1_476_TPlot.pdf
TRINITY_DN252_c0_g2:710	si_s691	TRINITY_DN252_c0_g2	699	719	710	-26.20	-19.30	0.736641221374046	8.5	1-18,719-702	19-21,701-699[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUUAAUCGAUUGGUUGGACUU&GAGUUUAAUUAGUCGAUUUAU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN252_c0_g2_710_TPlot.pdf
TRINITY_DN2530_c0_g1:1406	si_a142	TRINITY_DN2530_c0_g1	1395	1415	1406	-23.50	-15.80	0.672340425531915	10.5	5-19,1411-1397	1-4,1415-1412[UP5];20-21,1396-1395[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAAAAUAACAACGGUUUGGA&AAUUAAUCGUUGUUGUUUUAA	2	0.999999890860581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2530_c0_g1_1406_TPlot.pdf
TRINITY_DN2530_c0_g1:1407	si_a141	TRINITY_DN2530_c0_g1	1396	1416	1407	-23.80	-15.80	0.663865546218487	11.5	6-20,1411-1397	1-5,1416-1412[UP5];21-21,1396-1396[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAAAAUAACAACGGUUUGGAA&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999998988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2530_c0_g1_1407_TPlot.pdf
TRINITY_DN2530_c0_g1:826	si_a499	TRINITY_DN2530_c0_g1	814	834	826	-35.20	-23.40	0.664772727272727	7.5	1-5,834-830;8-18,828-818;19-21,816-814	6-7,829-829[AILq];x-x,817-817[BULt]	(((.(((((((((((.-(((((&)))))..)))))))))))-)))	CCACAGGGAGAUGAAC-AUGAC&GUCGUUUUUCGUCUUCCU-UGG	3	0.99999999990314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN2530_c0_g1_826_TPlot.pdf
TRINITY_DN2530_c0_g1:857	si_a550	TRINITY_DN2530_c0_g1	846	866	857	-30.90	-20.50	0.663430420711974	7.5	1-2,866-865;4-6,863-861;8-11,859-856;13-21,854-846	3-3,864-864[SIL];7-7,860-860[SIL];12-12,855-855[SIL]	(((((((((.((((.(((.((&)).))).)))).)))))))))	GGGAGAUGACGAAGAAGAAUG&CAAUCUAUUUCUUUAUCUCCC	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN2530_c0_g1_857_TPlot.pdf
TRINITY_DN2530_c0_g1:858	si_a790	TRINITY_DN2530_c0_g1	842	867	858	-25.80	-17.80	0.689922480620155	14	1-10,867-858;11-20,852-843	x-x,857-853[BULt];21-21,842-842[UP3]	.((((((((((.....((((((((((&))))))))))-----)))))))))).	AAUUGGGAGAUGACGAAGAAGAAUGG&CUAUUUUUCU-----AUUUUCCAAUC	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN2530_c0_g1_858_TPlot.pdf
TRINITY_DN2530_c0_g1:859	si_a789	TRINITY_DN2530_c0_g1	843	868	859	-24.80	-19.20	0.774193548387097	13	1-11,868-858;12-21,852-843	x-x,857-853[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	AUUGGGAGAUGACGAAGAAGAAUGGA&UCUAUUUUUCU-----AUUUUCCAAU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2530_c0_g1_859_TPlot.pdf
TRINITY_DN2530_c0_g1:860	si_a788	TRINITY_DN2530_c0_g1	844	869	860	-24.80	-18.10	0.729838709677419	14	2-12,868-858;13-21,852-844	1-1,869-869[UP5];x-x,857-853[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	UUGGGAGAUGACGAAGAAGAAUGGAC&UUCUAUUUUUCU-----AUUUUCCAA	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2530_c0_g1_860_TPlot.pdf
TRINITY_DN2530_c0_g1:861	si_a787	TRINITY_DN2530_c0_g1	845	870	861	-26.30	-17.30	0.657794676806084	11	3-13,868-858;14-21,852-845	1-2,870-869[UP5];x-x,857-853[BULt]	((((((((.....(((((((((((..&..)))))))))))-----))))))))	UGGGAGAUGACGAAGAAGAAUGGACC&CUUCUAUUUUUCU-----AUUUUCCA	2	0.999999999907151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2530_c0_g1_861_TPlot.pdf
TRINITY_DN25310_c0_g1:656	si_a867	TRINITY_DN25310_c0_g1	643	665	656	-24.10	-15.80	0.655601659751037	8.5	4-18,662-648;19-21,645-643	1-3,665-663[UP5];x-x,647-646[BULt]	(((..(((((((((((((((...&...)))))))))))))))--)))	GCAGAACUGAAUUUUUAAUAUUU&AAUUAUUAAAGAUUUAGU--UGC	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN25310_c0_g1_656_TPlot.pdf
TRINITY_DN25312_c0_g1:383	si_a788	TRINITY_DN25312_c0_g1	367	392	383	-24.80	-18.00	0.725806451612903	10.5	1-14,392-379;15-19,373-369	x-x,378-374[BULt];20-21,368-367[UP3]	..(((((.....((((((((((((((&))))))))))))))-----)))))..	GCGGAAAAAGCCGUAGAGGAAUGGAA&UUCUAUUUUUCUAU-----UUUCCAA	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN25312_c0_g1_383_TPlot.pdf
TRINITY_DN25317_c0_g1:73	si_s899	TRINITY_DN25317_c0_g1	60	84	73	-28.30	-20.70	0.731448763250883	8.5	1-9,84-76;10-14,73-69;15-21,66-60	x-x,75-74[BULt];x-x,68-67[BULt]	(((((((..(((((..(((((((((&)))))))))--)))))--)))))))	GAUUGAGACGUUGAAAAGAGGAAGC&GCUUUCUCU--UCAAU--UUCAAUU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN25317_c0_g1_73_TPlot.pdf
TRINITY_DN2532_c0_g1:1666	si_a75	TRINITY_DN2532_c0_g1	1655	1675	1666	-21.30	-14.10	0.661971830985915	10.5	5-18,1671-1658	1-4,1675-1672[UP5];19-21,1657-1655[UP3]	...((((((((((((((....&....))))))))))))))...	GACAUGAUGAAAAACAAAAUU&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999999736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2532_c0_g1_1666_TPlot.pdf
TRINITY_DN2532_c0_g1:1693	si_a407	TRINITY_DN2532_c0_g1	1682	1702	1693	-19.80	-13.00	0.656565656565657	6.5	1-14,1702-1689;17-18,1686-1685	15-16,1688-1687[SIL];19-21,1684-1682[UP3]	...((..((((((((((((((&))))))))))))))..))...	AUAUAUUUGUAAAUAAAACAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2532_c0_g1_1693_TPlot.pdf
TRINITY_DN2532_c0_g1:1694	si_a406	TRINITY_DN2532_c0_g1	1683	1703	1694	-19.80	-13.00	0.656565656565657	6.5	2-15,1702-1689;18-19,1686-1685	1-1,1703-1703[UP5];16-17,1688-1687[SIL];20-21,1684-1683[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	UAUAUUUGUAAAUAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2532_c0_g1_1694_TPlot.pdf
TRINITY_DN2533_c0_g1:1183	si_a768	TRINITY_DN2533_c0_g1	1172	1192	1183	-28.40	-21.10	0.742957746478873	8.5	1-6,1192-1187;9-10,1184-1183;12-21,1181-1172	7-8,1186-1185[SIL];11-11,1182-1182[SIL]	((((((((((.((..((((((&))))))..)).))))))))))	AGAGUUGGAUGGAGAGAAAAC&GUUUUUGAUUGAUUCAACUCU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN2533_c0_g1_1183_TPlot.pdf
TRINITY_DN2533_c0_g1:1620	si_a802	TRINITY_DN2533_c0_g1	1609	1630	1620	-34.70	-23.50	0.677233429394813	6.5	2-8,1629-1623;9-12,1621-1618;14-20,1616-1610	1-1,1630-1630[UP5];x-x,1622-1622[BULt];13-13,1617-1617[SIL];21-21,1609-1609[UP3]	.(((((((.((((.(((((((.&.)))))))-)))).))))))).	CUUUUCGCAUCGGAAUUGGAGC&UUUCCAAU-CCGAAGCGAAGAA	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN2533_c0_g1_1620_TPlot.pdf
TRINITY_DN2533_c0_g1:1875	si_s633	TRINITY_DN2533_c0_g1	1857	1884	1875	-37.90	-25.80	0.680738786279683	14.5	4-15,1881-1870;16-21,1862-1857	1-3,1884-1882[UP5];x-x,1869-1863[BULt]	((((((.......((((((((((((...&...))))))))))))-------))))))	GGGGCAGUCUAUGAACGCCUAUGAGUCG&CUUUUCGUAGGCGUU-------UGCCCU	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2533_c0_g1_1875_TPlot.pdf
TRINITY_DN2533_c0_g1:782	si_s792	TRINITY_DN2533_c0_g1	772	791	782	-28.50	-18.60	0.652631578947368	11	3-11,789-781;14-19,779-774	1-2,791-790[UP5];12-13,780-780[AILq];20-21,773-772[UP3]	..((((((.-(((((((((..&..)))))))))..))))))..	UCGGUGGGG-GCGAGCUUGAU&AACAAGCUCGUAUUUUAUCUU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN2533_c0_g1_782_TPlot.pdf
TRINITY_DN25340_c0_g2:1463	si_s809	TRINITY_DN25340_c0_g2	1452	1472	1463	-28.50	-19.40	0.680701754385965	10.5	1-13,1472-1460	14-21,1459-1452[UP3]	........(((((((((((((&)))))))))))))........	GUUUCACCGAGGUGGCGAAGA&UCUUCGUUACCUUUUCUUAAU	2	0.999882415131671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN25340_c0_g2_1463_TPlot.pdf
TRINITY_DN25344_c0_g1:1418	si_a877	TRINITY_DN25344_c0_g1	1406	1427	1418	-27.00	-18.10	0.67037037037037	7	1-12,1427-1416;15-18,1412-1409	13-14,1415-1413[AILt];19-21,1408-1406[UP3]	...((((...((((((((((((&))))))))))))-..))))...	AUCAUUGUUAUGCAACUAAAUC&GAUUUAGUUGCA-AUCAAUAUA	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN25344_c0_g1_1418_TPlot.pdf
TRINITY_DN25344_c0_g1:1420	si_a875	TRINITY_DN25344_c0_g1	1408	1429	1420	-27.10	-18.10	0.66789667896679	7	3-14,1427-1416;17-20,1412-1409	1-2,1429-1428[UP5];15-16,1415-1413[AILt];21-21,1408-1408[UP3]	.((((...((((((((((((..&..))))))))))))-..)))).	CAUUGUUAUGCAACUAAAUCGG&AAGAUUUAGUUGCA-AUCAAUA	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN25344_c0_g1_1420_TPlot.pdf
TRINITY_DN25344_c0_g1:1421	si_a874	TRINITY_DN25344_c0_g1	1409	1430	1421	-26.70	-17.90	0.670411985018727	8	4-15,1427-1416;18-21,1412-1409	1-3,1430-1428[UP5];16-17,1415-1413[AILt]	((((...((((((((((((...&...))))))))))))-..))))	AUUGUUAUGCAACUAAAUCGGC&AAAGAUUUAGUUGCA-AUCAAU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN25344_c0_g1_1421_TPlot.pdf
TRINITY_DN25344_c0_g1:1425	si_a870	TRINITY_DN25344_c0_g1	1414	1435	1425	-24.80	-18.20	0.733870967741935	9	1-5,1435-1431;8-19,1427-1416	6-7,1430-1428[AILt];20-21,1415-1414[UP3]	..((((((((((((...(((((&)))))-..))))))))))))..	UAUGCAACUAAAUCGGCUGAUA&UAUUA-AAGAUUUAGUUGCAAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN25344_c0_g1_1425_TPlot.pdf
TRINITY_DN25344_c0_g1:1426	si_a869	TRINITY_DN25344_c0_g1	1415	1436	1426	-24.80	-18.40	0.741935483870968	9	2-6,1435-1431;9-20,1427-1416	1-1,1436-1436[UP5];7-8,1430-1428[AILt];21-21,1415-1415[UP3]	.((((((((((((...(((((.&.)))))-..)))))))))))).	AUGCAACUAAAUCGGCUGAUAU&UUAUUA-AAGAUUUAGUUGCAA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN25344_c0_g1_1426_TPlot.pdf
TRINITY_DN25344_c0_g1:1427	si_a868	TRINITY_DN25344_c0_g1	1416	1437	1427	-24.80	-18.20	0.733870967741935	10	3-7,1435-1431;10-21,1427-1416	1-2,1437-1436[UP5];8-9,1430-1428[AILt]	((((((((((((...(((((..&..)))))-..))))))))))))	UGCAACUAAAUCGGCUGAUAUU&AUUAUUA-AAGAUUUAGUUGCA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN25344_c0_g1_1427_TPlot.pdf
TRINITY_DN25344_c0_g1:406	si_s79	TRINITY_DN25344_c0_g1	395	416	406	-26.20	-17.40	0.66412213740458	8	1-6,416-411;7-9,409-407;11-20,405-396	x-x,410-410[BULt];10-10,406-406[SIL];21-21,395-395[UP3]	.((((((((((.(((.((((((&))))))-))).)))))))))).	UGGAAGAAAGGCAAGCAAGAGG&UUUUUU-CUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN25344_c0_g1_406_TPlot.pdf
TRINITY_DN25344_c0_g1:407	si_s78	TRINITY_DN25344_c0_g1	396	416	407	-26.20	-17.60	0.67175572519084	7	1-6,416-411;8-10,409-407;12-21,405-396	7-7,410-410[SIL];11-11,406-406[SIL]	((((((((((.(((.((((((&)))))).))).))))))))))	GGAAGAAAGGCAAGCAAGAGG&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN25344_c0_g1_407_TPlot.pdf
TRINITY_DN25344_c0_g1:413	si_s812	TRINITY_DN25344_c0_g1	401	422	413	-26.40	-17.70	0.670454545454545	9	1-12,422-411;13-15,409-407	x-x,410-410[BULt];16-21,406-401[UP3]	......(((.((((((((((((&))))))))))))-)))......	AAAGGCAAGCAAGAGGUAACGA&UCGUUACCUUUU-CUUAAUAAU	2	0.997083128970816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN25344_c0_g1_413_TPlot.pdf
TRINITY_DN25344_c0_g1:414	si_s811	TRINITY_DN25344_c0_g1	402	423	414	-26.40	-18.60	0.704545454545455	7	1-13,423-411;14-16,409-407	x-x,410-410[BULt];17-21,406-402[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	AAGGCAAGCAAGAGGUAACGAA&UUCGUUACCUUUU-CUUAAUAA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN25344_c0_g1_414_TPlot.pdf
TRINITY_DN25344_c0_g1:415	si_s810	TRINITY_DN25344_c0_g1	403	424	415	-27.90	-18.80	0.673835125448029	7	2-14,423-411;15-17,409-407	1-1,424-424[UP5];x-x,410-410[BULt];18-21,406-403[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	AGGCAAGCAAGAGGUAACGAAA&CUUCGUUACCUUUU-CUUAAUA	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN25344_c0_g1_415_TPlot.pdf
TRINITY_DN25344_c0_g1:416	si_s809	TRINITY_DN25344_c0_g1	404	425	416	-28.50	-18.80	0.659649122807018	7.5	3-15,423-411;16-18,409-407	1-2,425-424[UP5];x-x,410-410[BULt];19-21,406-404[UP3]	...(((.(((((((((((((..&..)))))))))))))-)))...	GGCAAGCAAGAGGUAACGAAAA&UCUUCGUUACCUUUU-CUUAAU	2	0.99999950177275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN25344_c0_g1_416_TPlot.pdf
TRINITY_DN25344_c0_g1:417	si_s808	TRINITY_DN25344_c0_g1	405	426	417	-28.60	-18.80	0.657342657342657	8.5	4-16,423-411;17-19,409-407	1-3,426-424[UP5];x-x,410-410[BULt];20-21,406-405[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	GCAAGCAAGAGGUAACGAAAAU&AUCUUCGUUACCUUUU-CUUAA	2	0.999999939947991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN25344_c0_g1_417_TPlot.pdf
TRINITY_DN25344_c0_g1:418	si_s807	TRINITY_DN25344_c0_g1	406	427	418	-28.90	-19.10	0.660899653979239	4.5	1-3,427-425;5-17,423-411;18-20,409-407	4-4,424-424[SIL];x-x,410-410[BULt];21-21,406-406[UP3]	.(((.(((((((((((((.(((&))).)))))))))))))-))).	CAAGCAAGAGGUAACGAAAAUA&UAUCUUCGUUACCUUUU-CUUA	3	0.999999999951334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN25344_c0_g1_418_TPlot.pdf
TRINITY_DN25344_c0_g1:419	si_s806	TRINITY_DN25344_c0_g1	407	428	419	-28.60	-19.10	0.667832167832168	4.5	2-4,427-425;6-18,423-411;19-21,409-407	1-1,428-428[UP5];5-5,424-424[SIL];x-x,410-410[BULt]	(((.(((((((((((((.(((.&.))).)))))))))))))-)))	AAGCAAGAGGUAACGAAAAUAG&UUAUCUUCGUUACCUUUU-CUU	2	0.999999661262428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN25344_c0_g1_419_TPlot.pdf
TRINITY_DN25344_c0_g1:420	si_s805	TRINITY_DN25344_c0_g1	408	429	420	-28.60	-20.00	0.699300699300699	4.5	1-5,429-425;7-19,423-411;20-21,409-408	6-6,424-424[SIL];x-x,410-410[BULt]	((.(((((((((((((.(((((&))))).)))))))))))))-))	AGCAAGAGGUAACGAAAAUAGA&UUUAUCUUCGUUACCUUUU-CU	2	0.997889528026194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN25344_c0_g1_420_TPlot.pdf
TRINITY_DN25344_c0_g1:421	si_s804	TRINITY_DN25344_c0_g1	410	430	421	-27.90	-20.10	0.720430107526882	4.5	1-6,430-425;8-20,423-411	7-7,424-424[SIL];21-21,410-410[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	CAAGAGGUAACGAAAAUAGAA&UUUUAUCUUCGUUACCUUUUC	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN25344_c0_g1_421_TPlot.pdf
TRINITY_DN25344_c0_g1:422	si_s803	TRINITY_DN25344_c0_g1	411	431	422	-26.00	-20.10	0.773076923076923	4.5	2-7,430-425;9-21,423-411	1-1,431-431[UP5];8-8,424-424[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	AAGAGGUAACGAAAAUAGAAA&AUUUUAUCUUCGUUACCUUUU	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN25344_c0_g1_422_TPlot.pdf
TRINITY_DN25344_c0_g1:423	si_s802	TRINITY_DN25344_c0_g1	412	432	423	-26.40	-19.30	0.731060606060606	6.5	3-8,430-425;10-21,423-412	1-2,432-431[UP5];9-9,424-424[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGAGGUAACGAAAAUAGAAAG&UAUUUUAUCUUCGUUACCUUU	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN25344_c0_g1_423_TPlot.pdf
TRINITY_DN25344_c0_g1:424	si_s801	TRINITY_DN25344_c0_g1	413	433	424	-28.20	-19.60	0.695035460992908	6.5	1-2,433-432;4-9,430-425;11-21,423-413	3-3,431-431[SIL];10-10,424-424[SIL]	(((((((((((.((((((.((&)).)))))).)))))))))))	GAGGUAACGAAAAUAGAAAGC&GUAUUUUAUCUUCGUUACCUU	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN25344_c0_g1_424_TPlot.pdf
TRINITY_DN25344_c0_g1:432	si_a785	TRINITY_DN25344_c0_g1	421	441	432	-25.90	-18.68	0.721235521235521	8	1-6,441-436;10-21,432-421	7-9,435-433[SIL]	((((((((((((...((((((&))))))...))))))))))))	GAAAAUAGAAAGCCUGAAGGG&CUCUUCUAUUUUUCUAUUUUC	2	0.999818223926229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN25344_c0_g1_432_TPlot.pdf
TRINITY_DN25344_c0_g1:433	si_a784	TRINITY_DN25344_c0_g1	422	442	433	-24.70	-17.18	0.695546558704453	8	1-7,442-436;11-21,432-422	8-10,435-433[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	AAAAUAGAAAGCCUGAAGGGU&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999851826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN25344_c0_g1_433_TPlot.pdf
TRINITY_DN25344_c0_g1:434	si_a783	TRINITY_DN25344_c0_g1	423	443	434	-24.70	-16.48	0.667206477732794	9	2-8,442-436;12-21,432-423	1-1,443-443[UP5];9-11,435-433[SIL]	((((((((((...(((((((.&.)))))))...))))))))))	AAAUAGAAAGCCUGAAGGGUA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN25344_c0_g1_434_TPlot.pdf
TRINITY_DN25344_c0_g1:456	si_a497	TRINITY_DN25344_c0_g1	445	465	456	-32.00	-21.50	0.671875	10.5	3-7,463-459;10-19,456-447	1-2,465-464[UP5];8-9,458-457[SIL];20-21,446-445[UP3]	..((((((((((..(((((..&..)))))..))))))))))..	GUGGAAGAUGAACUAUGACGA&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999999965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN25344_c0_g1_456_TPlot.pdf
TRINITY_DN25344_c0_g1:457	si_a496	TRINITY_DN25344_c0_g1	446	466	457	-32.40	-21.50	0.66358024691358	11.5	4-8,463-459;11-20,456-447	1-3,466-464[UP5];9-10,458-457[SIL];21-21,446-446[UP3]	.((((((((((..(((((...&...)))))..)))))))))).	UGGAAGAUGAACUAUGACGAG&UAUGUCGUUUUUCGUCUUCCU	2	0.999999852867475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN25344_c0_g1_457_TPlot.pdf
TRINITY_DN25344_c0_g1:458	si_a495	TRINITY_DN25344_c0_g1	447	467	458	-31.90	-21.10	0.661442006269593	12.5	5-9,463-459;12-21,456-447	1-4,467-464[UP5];10-11,458-457[SIL]	((((((((((..(((((....&....)))))..))))))))))	GGAAGAUGAACUAUGACGAGG&AUAUGUCGUUUUUCGUCUUCC	3	0.999999999692903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN25344_c0_g1_458_TPlot.pdf
TRINITY_DN25344_c0_g1:63	si_a104	TRINITY_DN25344_c0_g1	53	72	63	-30.30	-19.70	0.65016501650165	10.5	3-10,70-63;14-21,60-53	1-2,72-71[UP5];11-13,62-61[AILq]	((((((((..-((((((((..&..))))))))...))))))))	AGCUCGUGAC-UGUCUUUGGU&AACGAAGAUAAAAUACGAGCU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a104_TRINITY_DN25344_c0_g1_63_TPlot.pdf
TRINITY_DN25344_c0_g1:814	si_a481	TRINITY_DN25344_c0_g1	801	823	814	-25.60	-17.90	0.69921875	7	1-12,823-812;13-13,810-810;14-21,808-801	x-x,811-811[BULt];x-x,809-809[BULt]	((((((((.(.((((((((((((&))))))))))))-)-))))))))	GAUAUGUUACAUGUGUAGCAAUA&UAUUGUUAUAUA-G-AAUAUGUC	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN25344_c0_g1_814_TPlot.pdf
TRINITY_DN25344_c0_g1:815	si_a457	TRINITY_DN25344_c0_g1	802	824	815	-23.50	-15.50	0.659574468085106	8	2-13,823-812;14-21,809-802	1-1,824-824[UP5];x-x,811-810[BULt]	((((((((..((((((((((((.&.))))))))))))--))))))))	AUAUGUUACAUGUGUAGCAAUAG&UUGUUGUUAUAUA--UAAUAUGU	3	0.999463646079035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN25344_c0_g1_815_TPlot.pdf
TRINITY_DN25348_c0_g1:486	si_s40	TRINITY_DN25348_c0_g1	475	495	486	-24.30	-18.30	0.753086419753086	4.5	2-11,494-485;13-20,483-476	1-1,495-495[UP5];12-12,484-484[SIL];21-21,475-475[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	CAGAUCCAAAUAUUAAAGAUA&AAUCUUUAAUAAUUGGAUUUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN25348_c0_g1_486_TPlot.pdf
TRINITY_DN25348_c0_g1:487	si_s39	TRINITY_DN25348_c0_g1	476	496	487	-22.30	-18.30	0.820627802690583	4.5	3-12,494-485;14-21,483-476	1-2,496-495[UP5];13-13,484-484[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGAUCCAAAUAUUAAAGAUAU&AAAUCUUUAAUAAUUGGAUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN25348_c0_g1_487_TPlot.pdf
TRINITY_DN2534_c0_g1:852	si_a703	TRINITY_DN2534_c0_g1	841	861	852	-29.20	-19.00	0.650684931506849	12	4-15,858-847	1-3,861-859[UP5];16-21,846-841[UP3]	......((((((((((((...&...))))))))))))......	AAAUCAUGGAAUGUACCGAUA&AACUGGUACAUUCCAAAAUAA	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN2534_c0_g1_852_TPlot.pdf
TRINITY_DN2536_c0_g1:527	si_a75	TRINITY_DN2536_c0_g1	515	536	527	-21.30	-14.00	0.657276995305164	9	3-10,534-527;11-19,525-517	1-2,536-535[UP5];x-x,526-526[BULt];20-21,516-515[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	UGAAUAAUGAAGGAGCAAUUGA&CAAAUUGUUU-UUCAUUAUUAA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2536_c0_g1_527_TPlot.pdf
TRINITY_DN2537_c1_g1:3595	si_a772	TRINITY_DN2537_c1_g1	3584	3604	3595	-29.80	-19.50	0.654362416107383	6	1-7,3604-3598;9-16,3596-3589;19-20,3586-3585	8-8,3597-3597[SIL];17-18,3588-3587[SIL];21-21,3584-3584[UP3]	.((..((((((((.(((((((&))))))).))))))))..)).	CAGUCGAGUUGAACCAGUCAA&UUGAUUGAUUCAACUCUUCUA	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN2537_c1_g1_3595_TPlot.pdf
TRINITY_DN2537_c1_g1:3596	si_a771	TRINITY_DN2537_c1_g1	3585	3605	3596	-29.40	-20.20	0.687074829931973	5	1-8,3605-3598;10-17,3596-3589;20-21,3586-3585	9-9,3597-3597[SIL];18-19,3588-3587[SIL]	((..((((((((.((((((((&)))))))).))))))))..))	AGUCGAGUUGAACCAGUCAAA&UUUGAUUGAUUCAACUCUUCU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN2537_c1_g1_3596_TPlot.pdf
TRINITY_DN2537_c1_g1:3597	si_a770	TRINITY_DN2537_c1_g1	3586	3606	3597	-28.70	-20.20	0.70383275261324	6.5	1-9,3606-3598;11-18,3596-3589	10-10,3597-3597[SIL];19-21,3588-3586[UP3]	...((((((((.(((((((((&))))))))).))))))))...	GUCGAGUUGAACCAGUCAAAG&UUUUGAUUGAUUCAACUCUUC	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN2537_c1_g1_3597_TPlot.pdf
TRINITY_DN2537_c1_g1:568	si_a81	TRINITY_DN2537_c1_g1	554	577	568	-23.00	-16.00	0.695652173913043	11	1-11,577-567;12-19,563-556	x-x,566-564[BULt];20-21,555-554[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	AAUUUCUUAAAGUUAGUGGAAGAC&GUUUUUCAUUA---UUAAGAAAAG	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN2537_c1_g1_568_TPlot.pdf
TRINITY_DN2537_c1_g1:569	si_a80	TRINITY_DN2537_c1_g1	555	578	569	-22.10	-16.10	0.728506787330317	11	2-12,577-567;13-20,563-556	1-1,578-578[UP5];x-x,566-564[BULt];21-21,555-555[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	AUUUCUUAAAGUUAGUGGAAGACG&UGUUUUUCAUUA---UUAAGAAAA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN2537_c1_g1_569_TPlot.pdf
TRINITY_DN2537_c5_g1:124	si_a428	TRINITY_DN2537_c5_g1	112	133	124	-31.80	-21.20	0.666666666666667	11.5	3-11,131-123;12-20,121-113	1-2,133-132[UP5];x-x,122-122[BULt];21-21,112-112[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	GGUUCAGCGGUGUCUUGUGUGU&AAAUAUAGGAU-CCGUUGGAUA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN2537_c5_g1_124_TPlot.pdf
TRINITY_DN2538_c0_g1:317	si_a600	TRINITY_DN2538_c0_g1	306	326	317	-29.70	-19.90	0.67003367003367	9.5	2-7,325-320;9-19,318-308	1-1,326-326[UP5];8-8,319-319[SIL];20-21,307-306[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	CAUGGAGUUGUGGCGGUUCUC&CAGAAUUUUCGCAAUUCCAAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN2538_c0_g1_317_TPlot.pdf
TRINITY_DN2538_c0_g1:408	si_s582	TRINITY_DN2538_c0_g1	397	417	408	-22.50	-14.70	0.653333333333333	15.5	7-17,411-401	1-6,417-412[UP5];18-21,400-397[UP3]	....(((((((((((......&......)))))))))))....	AGGAGUCCAUGAUUUGUCGAA&AUAAAAAAAUCAUGGAUAAAU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN2538_c0_g1_408_TPlot.pdf
TRINITY_DN25390_c0_g1:246	si_a407	TRINITY_DN25390_c0_g1	235	255	246	-19.80	-13.60	0.686868686868687	7	1-9,255-247;11-19,245-237	10-10,246-246[SIL];20-21,236-235[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UAUUAAAUAUGUACAGAAUAA&UUGUUUUGUUUAUAUUUAAAU	4	0.99999999999769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN25390_c0_g1_246_TPlot.pdf
TRINITY_DN25398_c0_g1:1332	si_a633	TRINITY_DN25398_c0_g1	1321	1342	1332	-26.40	-17.30	0.65530303030303	12	5-7,1338-1336;8-20,1334-1322	1-4,1342-1339[UP5];x-x,1335-1335[BULt];21-21,1321-1321[UP3]	.(((((((((((((.(((....&....)))-))))))))))))).	CACUCAAAAAAGUCAGGCCGGC&UUAUGUC-GAUUUUUUUGAGUA	3	0.999999999981206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN25398_c0_g1_1332_TPlot.pdf
TRINITY_DN2539_c0_g1:10540	si_a309	TRINITY_DN2539_c0_g1	10527	10548	10540	-33.60	-23.60	0.702380952380952	9	2-6,10547-10543;8-12,10542-10538;13-20,10535-10528	1-1,10548-10548[UP5];7-7,x-x[BULq];x-x,10537-10536[BULt];21-21,10527-10527[UP3]	.((((((((..(((((-(((((.&.))))).)))))--)))))))).	ACAUGGAUAAAGAUCC-AGCGAU&UUCGCUUGGAUU--UAUCCAUGA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN2539_c0_g1_10540_TPlot.pdf
TRINITY_DN2539_c0_g1:1071	si_a397	TRINITY_DN2539_c0_g1	1060	1080	1071	-24.00	-15.60	0.65	7	4-14,1077-1067;16-21,1065-1060	1-3,1080-1078[UP5];15-15,1066-1066[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AAAUAAUGCAAUUCUAUAAAA&GAAUAUAGAAUUGUUUUGUUU	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN2539_c0_g1_1071_TPlot.pdf
TRINITY_DN2539_c0_g1:2821	si_a387	TRINITY_DN2539_c0_g1	2810	2830	2821	-24.90	-16.30	0.654618473895582	5.5	1-12,2830-2819;14-18,2817-2813	13-13,2818-2818[SIL];19-21,2812-2810[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UUACUGUAGUUUUAAUUCGAA&UUCGAAUUAAGAAUAUAGAAU	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a387_TRINITY_DN2539_c0_g1_2821_TPlot.pdf
TRINITY_DN2539_c0_g1:2822	si_a386	TRINITY_DN2539_c0_g1	2811	2831	2822	-24.80	-17.20	0.693548387096774	4.5	1-13,2831-2819;15-19,2817-2813	14-14,2818-2818[SIL];20-21,2812-2811[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UACUGUAGUUUUAAUUCGAAA&UUUCGAAUUAAGAAUAUAGAA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN2539_c0_g1_2822_TPlot.pdf
TRINITY_DN2539_c0_g1:2823	si_a385	TRINITY_DN2539_c0_g1	2812	2832	2823	-24.80	-17.20	0.693548387096774	4	2-14,2831-2819;16-20,2817-2813	1-1,2832-2832[UP5];15-15,2818-2818[SIL];21-21,2812-2812[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	ACUGUAGUUUUAAUUCGAAAA&AUUUCGAAUUAAGAAUAUAGA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a385_TRINITY_DN2539_c0_g1_2823_TPlot.pdf
TRINITY_DN2539_c0_g1:2824	si_a384	TRINITY_DN2539_c0_g1	2813	2833	2824	-25.80	-17.20	0.666666666666667	5	3-15,2831-2819;17-21,2817-2813	1-2,2833-2832[UP5];16-16,2818-2818[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	CUGUAGUUUUAAUUCGAAAAG&GAUUUCGAAUUAAGAAUAUAG	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a384_TRINITY_DN2539_c0_g1_2824_TPlot.pdf
TRINITY_DN2539_c0_g1:5894	si_a471	TRINITY_DN2539_c0_g1	5883	5903	5894	-21.10	-13.90	0.658767772511848	8.5	3-18,5901-5886	1-2,5903-5902[UP5];19-21,5885-5883[UP3]	...((((((((((((((((..&..))))))))))))))))...	GACUGAUGAUAAUUACGUACC&AAUAUGUAAUUAUUGUUAUAU	2	0.99998112994115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2539_c0_g1_5894_TPlot.pdf
TRINITY_DN2539_c0_g1:5895	si_a470	TRINITY_DN2539_c0_g1	5884	5904	5895	-21.30	-13.90	0.652582159624413	9.5	4-19,5901-5886	1-3,5904-5902[UP5];20-21,5885-5884[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUGAUGAUAAUUACGUACCC&UAAUAUGUAAUUAUUGUUAUA	4	0.999999858471156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN2539_c0_g1_5895_TPlot.pdf
TRINITY_DN2539_c0_g1:5896	si_a469	TRINITY_DN2539_c0_g1	5885	5905	5896	-21.10	-13.90	0.658767772511848	10.5	5-20,5901-5886	1-4,5905-5902[UP5];21-21,5885-5885[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUGAUGAUAAUUACGUACCCC&AUAAUAUGUAAUUAUUGUUAU	2	0.999811308385682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN2539_c0_g1_5896_TPlot.pdf
TRINITY_DN2539_c0_g1:6344	si_a818	TRINITY_DN2539_c0_g1	6333	6353	6344	-28.90	-19.30	0.667820069204152	6.5	1-15,6353-6339	16-21,6338-6333[UP3]	......(((((((((((((((&)))))))))))))))......	UAAGCGUCUUUUCUUCUUCUU&AAGAAGAAGAAAGGAAAGAAA	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN2539_c0_g1_6344_TPlot.pdf
TRINITY_DN2539_c0_g1:6345	si_a817	TRINITY_DN2539_c0_g1	6334	6354	6345	-30.90	-23.10	0.747572815533981	5.5	1-16,6354-6339	17-21,6338-6334[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAGCGUCUUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN2539_c0_g1_6345_TPlot.pdf
TRINITY_DN2539_c0_g1:6346	si_a816	TRINITY_DN2539_c0_g1	6335	6355	6346	-32.30	-23.20	0.718266253869969	5.5	2-17,6354-6339	1-1,6355-6355[UP5];18-21,6338-6335[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGCGUCUUUUCUUCUUCUUCA&CGAAGAAGAAGAAAGGAAAGA	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN2539_c0_g1_6346_TPlot.pdf
TRINITY_DN2539_c0_g1:6349	si_a813	TRINITY_DN2539_c0_g1	6338	6358	6349	-32.90	-23.20	0.70516717325228	8.5	5-20,6354-6339	1-4,6358-6355[UP5];21-21,6338-6338[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUCUUUUCUUCUUCUUCAUCC&AAGCGAAGAAGAAGAAAGGAA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN2539_c0_g1_6349_TPlot.pdf
TRINITY_DN2539_c0_g1:6800	si_s568	TRINITY_DN2539_c0_g1	6784	6809	6800	-30.60	-20.22	0.66078431372549	15.5	1-10,6809-6800;12-18,6793-6787	11-11,6799-6794[AILt];19-21,6786-6784[UP3]	...(((((((......((((((((((&))))))))))-----.)))))))...	GGGUUAUUCCAGACGAUGUCCCGAAG&UUUCGGGACA-----AGGAAUAAAAA	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN2539_c0_g1_6800_TPlot.pdf
TRINITY_DN2539_c0_g1:6801	si_s567	TRINITY_DN2539_c0_g1	6785	6810	6801	-30.60	-20.22	0.66078431372549	16	2-11,6809-6800;13-19,6793-6787	1-1,6810-6810[UP5];12-12,6799-6794[AILt];20-21,6786-6785[UP3]	..(((((((......((((((((((.&.))))))))))-----.)))))))..	GGUUAUUCCAGACGAUGUCCCGAAGU&UUUUCGGGACA-----AGGAAUAAAA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN2539_c0_g1_6801_TPlot.pdf
TRINITY_DN2539_c0_g1:7037	si_a66	TRINITY_DN2539_c0_g1	7027	7046	7037	-26.70	-18.20	0.681647940074906	7.5	1-11,7046-7036;14-20,7034-7028	12-13,7035-7035[AILq];21-21,7027-7027[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	UAGAAUGAG-UGAAGGAGGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999998980839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2539_c0_g1_7037_TPlot.pdf
TRINITY_DN2539_c0_g1:7038	si_a65	TRINITY_DN2539_c0_g1	7028	7047	7038	-27.70	-18.20	0.657039711191336	6.5	2-12,7046-7036;15-21,7034-7028	1-1,7047-7047[UP5];13-14,7035-7035[AILq]	(((((((.-(((((((((((.&.)))))))))))..)))))))	AGAAUGAG-UGAAGGAGGCGU&UCGCUUCUUUCAAAUUGUUUU	2	0.999998908657712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN2539_c0_g1_7038_TPlot.pdf
TRINITY_DN2539_c0_g1:7142	si_a392	TRINITY_DN2539_c0_g1	7131	7151	7142	-22.80	-15.10	0.662280701754386	9	2-15,7150-7137	1-1,7151-7151[UP5];16-21,7136-7131[UP3]	......((((((((((((((.&.))))))))))))))......	UCCUCCUUCUGUAUUCUUGAC&AUUAAGAAUAUAGAAUUGUUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN2539_c0_g1_7142_TPlot.pdf
TRINITY_DN2539_c0_g1:7143	si_a391	TRINITY_DN2539_c0_g1	7132	7152	7143	-22.80	-15.10	0.662280701754386	10	3-16,7150-7137	1-2,7152-7151[UP5];17-21,7136-7132[UP3]	.....((((((((((((((..&..)))))))))))))).....	CCUCCUUCUGUAUUCUUGACA&AAUUAAGAAUAUAGAAUUGUU	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN2539_c0_g1_7143_TPlot.pdf
TRINITY_DN253_c0_g1:1392	si_s89	TRINITY_DN253_c0_g1	1381	1401	1392	-35.30	-26.00	0.736543909348442	8.5	1-4,1401-1398;7-20,1395-1382	5-6,1397-1396[SIL];21-21,1381-1381[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGAAGCGGAGGAGAGCCGAGG&CCUUUCUUCUUCUUCGCUUCG	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN253_c0_g1_1392_TPlot.pdf
TRINITY_DN253_c0_g2:2546	si_s163	TRINITY_DN253_c0_g2	2536	2555	2546	-38.60	-25.40	0.658031088082901	7.5	1-3,2555-2553;5-14,2551-2542;17-19,2540-2538	4-4,2552-2552[SIL];15-16,2541-2541[AILq];20-21,2537-2536[UP3]	..(((.-((((((((((.(((&))).))))))))))..)))..	UCCUUC-CCCCUGGCCGAGAG&UUCAUGGCCAGGGGUAAAGAU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s163_TRINITY_DN253_c0_g2_2546_TPlot.pdf
TRINITY_DN253_c0_g2:2561	si_s154	TRINITY_DN253_c0_g2	2544	2570	2561	-41.30	-27.50	0.665859564164649	15.5	5-13,2566-2558;14-21,2551-2544	1-4,2570-2567[UP5];x-x,2557-2552[BULt]	((((((((......(((((((((....&....)))))))))------))))))))	CCUGGCCGAGAGUCUGAGCUUCCGUCU&CAAAGGAGGUUCA------UGGCCAGG	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s154_TRINITY_DN253_c0_g2_2561_TPlot.pdf
TRINITY_DN253_c0_g2:2592	si_a458	TRINITY_DN253_c0_g2	2580	2601	2592	-23.80	-15.50	0.651260504201681	10.5	2-13,2600-2589;16-20,2585-2581	1-1,2601-2601[UP5];14-15,2588-2586[AILt];21-21,2580-2580[UP3]	.(((((...((((((((((((.&.))))))))))))-..))))).	AACGUGCGCGUGUGUGACAGCU&UGUUGUUAUAUAU-AAUAUGUA	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN253_c0_g2_2592_TPlot.pdf
TRINITY_DN253_c0_g2:3447	si_a279	TRINITY_DN253_c0_g2	3436	3457	3447	-32.50	-21.50	0.661538461538462	11.5	1-4,3457-3454;7-8,3450-3449;10-21,3447-3436	5-6,3453-3451[AILt];9-9,3448-3448[SIL]	((((((((((((.((...((((&))))-..)).))))))))))))	GGUCCGGGCGGUGUUGCGCGUG&UACG-AAAAGAUCGCUUGGAUU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN253_c0_g2_3447_TPlot.pdf
TRINITY_DN253_c0_g2:3772	si_s291	TRINITY_DN253_c0_g2	3760	3785	3772	-38.10	-24.80	0.650918635170604	15	1-7,3785-3779;8-11,3774-3771;12-15,3769-3766;18-21,3763-3760	x-x,3778-3775[BULt];x-x,3770-3770[BULt];16-17,3765-3764[SIL]	((((..((((.((((....(((((((&)))))))----))))-))))..))))	CGCACAUCCACGUCGCCCGGCUGGGC&GCCUAGU----CGAU-UGGAAUUGCG	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN253_c0_g2_3772_TPlot.pdf
TRINITY_DN253_c0_g2:3809	si_s375	TRINITY_DN253_c0_g2	3798	3824	3809	-44.10	-28.70	0.650793650793651	15.5	1-4,3824-3821;5-7,3817-3815;8-19,3811-3800	x-x,3820-3818[BULt];x-x,3814-3812[BULt];20-21,3799-3798[UP3]	..((((((((((((...(((...((((&))))---)))---))))))))))))..	CUGGUGGACACGUGUUUAGCAUUGAUC&GAUC---GCU---CGCGUGUCCGCCUU	2	0.999476415612255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN253_c0_g2_3809_TPlot.pdf
TRINITY_DN253_c0_g2:3810	si_s374	TRINITY_DN253_c0_g2	3799	3825	3810	-45.60	-30.40	0.666666666666667	14.5	1-5,3825-3821;6-8,3817-3815;9-20,3811-3800	x-x,3820-3818[BULt];x-x,3814-3812[BULt];21-21,3799-3799[UP3]	.((((((((((((...(((...(((((&)))))---)))---)))))))))))).	UGGUGGACACGUGUUUAGCAUUGAUCG&CGAUC---GCU---CGCGUGUCCGCCU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN253_c0_g2_3810_TPlot.pdf
TRINITY_DN253_c0_g2:3956	si_s220	TRINITY_DN253_c0_g2	3944	3965	3956	-34.70	-23.70	0.682997118155619	8	1-5,3965-3961;8-12,3958-3954;13-19,3952-3946	6-7,3960-3959[SIL];x-x,3953-3953[BULt];20-21,3945-3944[UP3]	..(((((((.(((((..(((((&)))))..)))))-)))))))..	CAUAUUCACGGCGGUCACGAAC&GUUCGAAACCGC-GUGAAUAAG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s220_TRINITY_DN253_c0_g2_3956_TPlot.pdf
TRINITY_DN253_c0_g2:3957	si_s219	TRINITY_DN253_c0_g2	3945	3966	3957	-33.80	-23.80	0.70414201183432	7	2-6,3965-3961;9-13,3958-3954;14-20,3952-3946	1-1,3966-3966[UP5];7-8,3960-3959[SIL];x-x,3953-3953[BULt];21-21,3945-3945[UP3]	.(((((((.(((((..(((((.&.)))))..)))))-))))))).	AUAUUCACGGCGGUCACGAACG&UGUUCGAAACCGC-GUGAAUAA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN253_c0_g2_3957_TPlot.pdf
TRINITY_DN253_c0_g2:3958	si_s218	TRINITY_DN253_c0_g2	3946	3967	3958	-35.50	-23.80	0.670422535211268	7	2-7,3966-3961;10-14,3958-3954;15-21,3952-3946	1-1,3967-3967[UP5];8-9,3960-3959[SIL];x-x,3953-3953[BULt]	(((((((.(((((..((((((.&.))))))..)))))-)))))))	UAUUCACGGCGGUCACGAACGG&GUGUUCGAAACCGC-GUGAAUA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN253_c0_g2_3958_TPlot.pdf
TRINITY_DN253_c0_g2:3961	si_s215	TRINITY_DN253_c0_g2	3949	3970	3961	-37.40	-25.50	0.681818181818182	9	1-3,3970-3968;5-10,3966-3961;13-17,3958-3954;18-21,3952-3949	4-4,3967-3967[SIL];11-12,3960-3959[SIL];x-x,3953-3953[BULt]	((((.(((((..((((((.(((&))).))))))..)))))-))))	UCACGGCGGUCACGAACGGAGC&GUUGUGUUCGAAACCGC-GUGA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN253_c0_g2_3961_TPlot.pdf
TRINITY_DN253_c0_g2:4038	si_a178	TRINITY_DN253_c0_g2	4027	4047	4038	-32.90	-22.92	0.696656534954407	12	1-8,4047-4040;15-21,4033-4027	9-14,4039-4034[SIL]	(((((((......((((((((&))))))))......)))))))	GGGAGGAGCGGCGCUGGACGG&CCGUCUAGAUAAUAUCUUUCC	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN253_c0_g2_4038_TPlot.pdf
TRINITY_DN253_c0_g2:4110	si_s638	TRINITY_DN253_c0_g2	4097	4119	4110	-40.30	-26.20	0.650124069478908	9	2-4,4118-4116;6-13,4114-4107;14-14,4105-4105;15-19,4103-4099	1-1,4119-4119[UP5];5-5,4115-4115[SIL];x-x,4106-4106[BULt];x-x,4104-4104[BULt];20-21,4098-4097[UP3]	..(((((.(.((((((((.(((.&.))).))))))))-)-)))))..	CCUCGAGUGCGCAGACGCGUGCU&CGUAGGCGUUUGC-C-CUCGAUA	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN253_c0_g2_4110_TPlot.pdf
TRINITY_DN253_c0_g2:4194	si_s596	TRINITY_DN253_c0_g2	4183	4203	4194	-30.40	-19.90	0.654605263157895	9	1-9,4203-4195;12-16,4192-4188	10-11,4194-4193[SIL];17-21,4187-4183[UP3]	.....(((((..(((((((((&)))))))))..))))).....	UACUCUUCGCCGGGAUUUAUC&GAUAAAUCCAAGCGAAUCUUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s596_TRINITY_DN253_c0_g2_4194_TPlot.pdf
TRINITY_DN253_c0_g2:4388	si_a315	TRINITY_DN253_c0_g2	4376	4397	4388	-27.00	-19.70	0.72962962962963	7	1-10,4397-4388;11-15,4386-4382;18-21,4379-4376	x-x,4387-4387[BULt];16-17,4381-4380[SIL]	((((..(((((.((((((((((&))))))))))-)))))..))))	GGAACUUCAUGCGAUAGGUCCA&UGGAUUUAUC-CAUGAUUUUUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN253_c0_g2_4388_TPlot.pdf
TRINITY_DN2540_c0_g1:3467	si_s162	TRINITY_DN2540_c0_g1	3456	3477	3467	-40.10	-26.30	0.655860349127182	8.5	1-4,3477-3474;5-17,3472-3460	x-x,3473-3473[BULt];18-21,3459-3456[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	CCAAUAUCCCUGGCUGUAGAAC&GUUC-AUGGCCAGGGGUAAAGA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN2540_c0_g1_3467_TPlot.pdf
TRINITY_DN2540_c0_g1:4709	si_s497	TRINITY_DN2540_c0_g1	4698	4718	4709	-22.00	-15.20	0.690909090909091	15.5	9-21,4710-4698	1-8,4718-4711[UP5]	(((((((((((((........&........)))))))))))))	AGAGUUGUUUUGUGGGCGUUC&AAAUAUAAACAAAACAAUUCU	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN2540_c0_g1_4709_TPlot.pdf
TRINITY_DN2540_c0_g1:5268	si_a410	TRINITY_DN2540_c0_g1	5257	5277	5268	-17.80	-12.10	0.679775280898876	10	1-14,5277-5264	15-21,5263-5257[UP3]	.......((((((((((((((&)))))))))))))).......	GUGUUACAAAUAUGAGCAGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999886112	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2540_c0_g1_5268_TPlot.pdf
TRINITY_DN2540_c0_g1:6759	si_s501	TRINITY_DN2540_c0_g1	6748	6769	6759	-22.60	-17.10	0.756637168141593	7	4-9,6766-6761;10-21,6759-6748	1-3,6769-6767[UP5];x-x,6760-6760[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AUAUAGAAUUGUCUUUGUUGAA&AUAAACAAA-ACAAUUCUAUAU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s501_TRINITY_DN2540_c0_g1_6759_TPlot.pdf
TRINITY_DN2540_c0_g1:6761	si_s500	TRINITY_DN2540_c0_g1	6749	6770	6761	-22.80	-16.10	0.706140350877193	9	5-10,6766-6761;11-21,6759-6749	1-4,6770-6767[UP5];x-x,6760-6760[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	UAUAGAAUUGUCUUUGUUGAAA&UAUAAACAAA-ACAAUUCUAUA	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN2540_c0_g1_6761_TPlot.pdf
TRINITY_DN2540_c0_g1:6762	si_s499	TRINITY_DN2540_c0_g1	6750	6771	6762	-22.60	-14.70	0.650442477876106	11	6-11,6766-6761;12-21,6759-6750	1-5,6771-6767[UP5];x-x,6760-6760[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	AUAGAAUUGUCUUUGUUGAAAA&AUAUAAACAAA-ACAAUUCUAU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN2540_c0_g1_6762_TPlot.pdf
TRINITY_DN2540_c0_g1:7067	si_s813	TRINITY_DN2540_c0_g1	7056	7075	7067	-27.10	-19.10	0.70479704797048	7.5	1-7,7075-7069;10-20,7067-7057	8-9,7068-7068[AILq];21-21,7056-7056[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	AAUUGUUGGGAAC-GGUAGCG&CGUUACCUUUUCUUAAUAAUG	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN2540_c0_g1_7067_TPlot.pdf
TRINITY_DN2540_c0_g1:7069	si_s811	TRINITY_DN2540_c0_g1	7058	7077	7069	-26.40	-19.80	0.75	6.5	1-9,7077-7069;12-21,7067-7058	10-11,7068-7068[AILq]	((((((((((.-(((((((((&)))))))))..))))))))))	UUGUUGGGAAC-GGUAGCGAA&UUCGUUACCUUUUCUUAAUAA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN2540_c0_g1_7069_TPlot.pdf
TRINITY_DN2540_c0_g1:7610	si_a320	TRINITY_DN2540_c0_g1	7600	7619	7610	-24.40	-18.00	0.737704918032787	5.5	1-13,7619-7607;16-20,7605-7601	14-15,7606-7606[AILq];21-21,7600-7600[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	UGAUGAU-GAAUCAUGGAUGA&UUAUCCAUGAUUUUUUUAUUC	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN2540_c0_g1_7610_TPlot.pdf
TRINITY_DN2540_c0_g1:7611	si_a319	TRINITY_DN2540_c0_g1	7601	7620	7611	-22.40	-18.90	0.84375	4.5	1-14,7620-7607;17-21,7605-7601	15-16,7606-7606[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	GAUGAU-GAAUCAUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2540_c0_g1_7611_TPlot.pdf
TRINITY_DN2540_c0_g1:7613	si_a317	TRINITY_DN2540_c0_g1	7602	7622	7613	-24.30	-17.20	0.707818930041152	9.5	3-16,7620-7607	1-2,7622-7621[UP5];17-21,7606-7602[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUGAUGAAUCAUGGAUGAAAG&GAUUUAUCCAUGAUUUUUUUA	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2540_c0_g1_7613_TPlot.pdf
TRINITY_DN25418_c0_g1:46	si_s44	TRINITY_DN25418_c0_g1	35	55	46	-24.70	-17.20	0.696356275303644	5	1-13,55-43;15-18,41-38	14-14,42-42[SIL];19-21,37-35[UP3]	...((((.(((((((((((((&))))))))))))).))))...	CAGUGAACUCCAAUUAUUGAA&UUUAAUAAUUGGAUUUCAAGU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN25418_c0_g1_46_TPlot.pdf
TRINITY_DN2542_c1_g1:1907	si_a500	TRINITY_DN2542_c1_g1	1896	1916	1907	-34.40	-25.20	0.732558139534884	9	1-2,1916-1915;4-6,1913-1911;9-21,1908-1896	3-3,1914-1914[SIL];7-8,1910-1909[SIL]	(((((((((((((..(((.((&)).)))..)))))))))))))	UCCGGGGAAGACGCUGGAGGA&UCGUUUUUCGUCUUCCUUGGA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2542_c1_g1_1907_TPlot.pdf
TRINITY_DN2542_c1_g1:5674	si_s621	TRINITY_DN2542_c1_g1	5663	5687	5674	-32.50	-22.10	0.68	16	4-6,5684-5682;7-20,5677-5664	1-3,5687-5685[UP5];x-x,5681-5678[BULt];21-21,5663-5663[UP3]	.((((((((((((((....(((...&...)))----)))))))))))))).	GACGGGAAGGUCGCUCCCCUGGUGC&AAUCCA----AGCGAUCUUUUCGUA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN2542_c1_g1_5674_TPlot.pdf
TRINITY_DN2542_c1_g1:5675	si_s620	TRINITY_DN2542_c1_g1	5664	5688	5675	-32.10	-21.70	0.67601246105919	16.5	5-7,5684-5682;8-21,5677-5664	1-4,5688-5685[UP5];x-x,5681-5678[BULt]	((((((((((((((....(((....&....)))----))))))))))))))	ACGGGAAGGUCGCUCCCCUGGUGCC&AAAUCCA----AGCGAUCUUUUCGU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN2542_c1_g1_5675_TPlot.pdf
TRINITY_DN2542_c1_g1:5689	si_a724	TRINITY_DN2542_c1_g1	5678	5698	5689	-36.70	-24.80	0.67574931880109	11	1-4,5698-5695;7-16,5692-5683	5-6,5694-5693[SIL];17-21,5682-5678[UP3]	.....((((((((((..((((&))))..)))))))))).....	CCCCUGGUGCCCGAGGCGCGG&UCGUUACUCGGGCAUCUUUAC	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN2542_c1_g1_5689_TPlot.pdf
TRINITY_DN2542_c1_g1:5690	si_a723	TRINITY_DN2542_c1_g1	5679	5699	5690	-35.10	-24.80	0.706552706552707	11.5	2-5,5698-5695;8-17,5692-5683	1-1,5699-5699[UP5];6-7,5694-5693[SIL];18-21,5682-5679[UP3]	....((((((((((..((((.&.))))..))))))))))....	CCCUGGUGCCCGAGGCGCGGC&AUCGUUACUCGGGCAUCUUUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN2542_c1_g1_5690_TPlot.pdf
TRINITY_DN2542_c1_g1:5694	si_a719	TRINITY_DN2542_c1_g1	5683	5703	5694	-34.60	-24.40	0.705202312138728	15.5	6-9,5698-5695;12-21,5692-5683	1-5,5703-5699[UP5];10-11,5694-5693[SIL]	((((((((((..((((.....&.....))))..))))))))))	GGUGCCCGAGGCGCGGCUUAG&AAUAAUCGUUACUCGGGCAUC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN2542_c1_g1_5694_TPlot.pdf
TRINITY_DN2542_c1_g1:5695	si_a718	TRINITY_DN2542_c1_g1	5684	5704	5695	-32.60	-22.30	0.684049079754601	17.5	7-10,5698-5695;13-21,5692-5684	1-6,5704-5699[UP5];11-12,5694-5693[SIL]	(((((((((..((((......&......))))..)))))))))	GUGCCCGAGGCGCGGCUUAGG&AAAUAAUCGUUACUCGGGCAU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN2542_c1_g1_5695_TPlot.pdf
TRINITY_DN2542_c2_g1:36	si_a325	TRINITY_DN2542_c2_g1	26	45	36	-25.90	-18.40	0.71042471042471	6	1-12,45-34;14-19,33-28;21-21,26-26	13-13,x-x[BULq];20-20,27-27[SIL]	(.((((((-((((((((((((&)))))))))))).)))))).)	AGAAGGAA-GAAAAGGUCGUG&CAUGAUUUUUUUAUUCCUUGU	0	0.119773257741716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2542_c2_g1_36_TPlot.pdf
TRINITY_DN25432_c0_g1:840	si_s39	TRINITY_DN25432_c0_g1	831	849	840	-22.30	-16.60	0.744394618834081	4.5	2-12,848-838;15-21,837-831	1-1,849-849[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	AGAUCCA--UAUUGAAGAUUG&AAAUCUUUAAUAAUUGGAUUU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN25432_c0_g1_840_TPlot.pdf
TRINITY_DN25432_c0_g1:841	si_s38	TRINITY_DN25432_c0_g1	832	850	841	-22.70	-15.90	0.700440528634361	6.5	3-13,848-838;16-21,837-832	1-2,850-849[UP5];14-15,x-x[BULq]	((((((--(((((((((((..&..)))))))))))..))))))	GAUCCA--UAUUGAAGAUUGA&UAAAUCUUUAAUAAUUGGAUU	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN25432_c0_g1_841_TPlot.pdf
TRINITY_DN25435_c0_g1:819	si_s810	TRINITY_DN25435_c0_g1	808	828	819	-27.90	-18.40	0.659498207885305	7	1-8,828-821;10-18,819-811	9-9,820-820[SIL];19-21,810-808[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AAAUAAGAAGAGAUAAUGAAG&CUUCGUUACCUUUUCUUAAUA	2	0.99999276288231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN25435_c0_g1_819_TPlot.pdf
TRINITY_DN25435_c0_g1:820	si_s809	TRINITY_DN25435_c0_g1	809	829	820	-28.50	-18.60	0.652631578947368	6	1-9,829-821;11-19,819-811	10-10,820-820[SIL];20-21,810-809[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAUAAGAAGAGAUAAUGAAGG&UCUUCGUUACCUUUUCUUAAU	4	0.999999999997737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN25435_c0_g1_820_TPlot.pdf
TRINITY_DN25435_c0_g1:821	si_s808	TRINITY_DN25435_c0_g1	810	830	821	-28.60	-20.20	0.706293706293706	5.5	1-10,830-821;12-20,819-811	11-11,820-820[SIL];21-21,810-810[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AUAAGAAGAGAUAAUGAAGGU&AUCUUCGUUACCUUUUCUUAA	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN25435_c0_g1_821_TPlot.pdf
TRINITY_DN25435_c0_g1:823	si_s806	TRINITY_DN25435_c0_g1	812	832	823	-28.60	-19.40	0.678321678321678	5.5	2-12,831-821;14-21,819-812	1-1,832-832[UP5];13-13,820-820[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	AAGAAGAGAUAAUGAAGGUGU&UUAUCUUCGUUACCUUUUCUU	4	0.999999997365935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN25435_c0_g1_823_TPlot.pdf
TRINITY_DN25439_c0_g2:1298	si_a328	TRINITY_DN25439_c0_g2	1287	1308	1298	-30.10	-19.90	0.661129568106312	12.5	1-3,1308-1306;5-9,1303-1299;11-20,1297-1288	4-4,1305-1304[AILt];10-10,1298-1298[SIL];21-21,1287-1287[UP3]	.((((((((((.(((((..(((&)))-.))))).)))))))))).	AGGACGAGGAGGGAGGACUGUC&GAU-UUUUUUAUUCCUUGUCCC	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN25439_c0_g2_1298_TPlot.pdf
TRINITY_DN25439_c0_g2:2369	si_a454	TRINITY_DN25439_c0_g2	2356	2378	2369	-21.30	-14.30	0.671361502347418	12.5	1-11,2378-2368;12-20,2365-2357	x-x,2367-2366[BULt];21-21,2356-2356[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	GGUUGUGUGUUUGAUAGCGGUUG&UAAUUGUUGUU--AUAUAUAAUA	3	0.999997278599856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN25439_c0_g2_2369_TPlot.pdf
TRINITY_DN25441_c0_g1:1213	si_a323	TRINITY_DN25441_c0_g1	1202	1222	1213	-26.80	-17.80	0.664179104477612	7.5	1-6,1222-1217;8-14,1215-1209;16-20,1207-1203	7-7,1216-1216[SIL];15-15,1208-1208[SIL];21-21,1202-1202[UP3]	.(((((.(((((((.((((((&)))))).))))))).))))).	CAGGAGGAAGAAGAACGUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.999999918942414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN25441_c0_g1_1213_TPlot.pdf
TRINITY_DN25441_c0_g1:1214	si_a322	TRINITY_DN25441_c0_g1	1203	1223	1214	-27.00	-17.80	0.659259259259259	7	2-7,1222-1217;9-15,1215-1209;17-21,1207-1203	1-1,1223-1223[UP5];8-8,1216-1216[SIL];16-16,1208-1208[SIL]	(((((.(((((((.((((((.&.)))))).))))))).)))))	AGGAGGAAGAAGAACGUGGAG&AUCCAUGAUUUUUUUAUUCCU	3	0.999999796088195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN25441_c0_g1_1214_TPlot.pdf
TRINITY_DN25448_c0_g1:117	si_a78	TRINITY_DN25448_c0_g1	105	127	117	-22.30	-15.60	0.699551569506726	6	1-9,127-119;10-16,117-111;17-20,109-106	x-x,118-118[BULt];x-x,110-110[BULt];21-21,105-105[UP3]	.((((.(((((((.(((((((((&)))))))))-)))))))-)))).	CUCUUAAAUAGUGUAAGAACAAU&AUUGUUUUU-CAUUAUU-AAGAA	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN25448_c0_g1_117_TPlot.pdf
TRINITY_DN2544_c0_g1:1804	si_a544	TRINITY_DN2544_c0_g1	1792	1813	1804	-28.90	-21.20	0.73356401384083	7	1-11,1813-1803;12-18,1801-1795	x-x,1802-1802[BULt];19-21,1794-1792[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	CUCAGAAAUAUGAUUGAGCUGA&UCGGUUCAAUC-UAUUUCUUUA	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN2544_c0_g1_1804_TPlot.pdf
TRINITY_DN2544_c0_g1:1805	si_a543	TRINITY_DN2544_c0_g1	1793	1814	1805	-28.70	-21.20	0.738675958188153	7	2-12,1813-1803;13-19,1801-1795	1-1,1814-1814[UP5];x-x,1802-1802[BULt];20-21,1794-1793[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	UCAGAAAUAUGAUUGAGCUGAG&AUCGGUUCAAUC-UAUUUCUUU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN2544_c0_g1_1805_TPlot.pdf
TRINITY_DN2544_c0_g1:1806	si_a542	TRINITY_DN2544_c0_g1	1794	1815	1806	-30.70	-21.20	0.690553745928339	7	3-13,1813-1803;14-20,1801-1795	1-2,1815-1814[UP5];x-x,1802-1802[BULt];21-21,1794-1794[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	CAGAAAUAUGAUUGAGCUGAGC&GAUCGGUUCAAUC-UAUUUCUU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN2544_c0_g1_1806_TPlot.pdf
TRINITY_DN2544_c0_g1:1807	si_a541	TRINITY_DN2544_c0_g1	1795	1816	1807	-32.20	-22.80	0.708074534161491	5	1-2,1816-1815;4-14,1813-1803;15-21,1801-1795	3-3,1814-1814[SIL];x-x,1802-1802[BULt]	(((((((.(((((((((((.((&)).)))))))))))-)))))))	AGAAAUAUGAUUGAGCUGAGCG&CGAUCGGUUCAAUC-UAUUUCU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a541_TRINITY_DN2544_c0_g1_1807_TPlot.pdf
TRINITY_DN2544_c0_g2:133	si_a263	TRINITY_DN2544_c0_g2	122	144	133	-40.90	-26.70	0.65281173594132	13.5	4-9,141-136;11-19,132-124	1-3,144-142[UP5];10-10,135-133[AILt];20-21,123-122[UP3]	..(((((((((...((((((...&...))))))--.)))))))))..	AGGUGGGCGUUCCAGCCCUCCUC&AUCGAGGGC--AAACGCCUACGA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a263_TRINITY_DN2544_c0_g2_133_TPlot.pdf
TRINITY_DN2544_c0_g2:180	si_s94	TRINITY_DN2544_c0_g2	165	189	180	-35.50	-23.50	0.661971830985915	12.5	1-12,189-178;13-18,173-168	x-x,177-174[BULt];19-21,167-165[UP3]	...((((((....((((((((((((&))))))))))))----))))))...	AGCUCUGAACGACGCGAAGAAGGAG&CUUCUUCUUCGC----UUCGGAUUG	2	0.99997154569721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2544_c0_g2_180_TPlot.pdf
TRINITY_DN2544_c0_g2:181	si_s93	TRINITY_DN2544_c0_g2	166	190	181	-34.80	-23.50	0.675287356321839	8.5	2-13,189-178;14-19,173-168	1-1,190-190[UP5];x-x,177-174[BULt];20-21,167-166[UP3]	..((((((....((((((((((((.&.))))))))))))----))))))..	GCUCUGAACGACGCGAAGAAGGAGU&UCUUCUUCUUCGC----UUCGGAUU	4	0.999999998027039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2544_c0_g2_181_TPlot.pdf
TRINITY_DN2544_c0_g2:229	si_a440	TRINITY_DN2544_c0_g2	218	248	229	-30.80	-21.10	0.685064935064935	23	2-8,247-241;9-20,230-219	1-1,248-248[UP5];x-x,240-231[BULt];21-21,218-218[UP3]	.((((((((((((..........(((((((.&.)))))))----------)))))))))))).	CCAAUUAUCUCAUGGAGGCCCUCGUCCAACU&CGUUGGAU----------AUGAGAUAAUUGU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN2544_c0_g2_229_TPlot.pdf
TRINITY_DN2544_c0_g2:290	si_a29	TRINITY_DN2544_c0_g2	278	299	290	-31.00	-20.40	0.658064516129032	14	6-15,294-285;16-19,283-280	1-5,299-295[UP5];x-x,284-284[BULt];20-21,279-278[UP3]	..((((.((((((((((.....&.....))))))))))-))))..	GCCCGGCUCUUGGAGCUUAUAU&UUUUUAGUUCUAAGA-CCGGUA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN2544_c0_g2_290_TPlot.pdf
TRINITY_DN2544_c0_g2:302	si_a660	TRINITY_DN2544_c0_g2	289	312	302	-36.60	-24.80	0.677595628415301	6	1-6,312-307;7-14,305-298;15-17,296-294;18-21,292-289	x-x,306-306[BULt];x-x,297-297[BULt];x-x,293-293[BULt]	((((.(((.((((((((.((((((&))))))-))))))))-)))-))))	GGAGCUUAUAUAGGCGUCUUCCCG&CGGGAA-AUGCCUAU-UGA-UUCC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN2544_c0_g2_302_TPlot.pdf
TRINITY_DN25465_c0_g1:267	si_s432	TRINITY_DN25465_c0_g1	256	276	267	-21.30	-15.20	0.713615023474178	7	2-6,275-271;8-19,269-258	1-1,276-276[UP5];7-7,270-270[SIL];20-21,257-256[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	AUUGAUGUGUGAUUUUUGUUU&UAACAAUAAUUACAUAUUAUA	0	0.0554379155539118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN25465_c0_g1_267_TPlot.pdf
TRINITY_DN25467_c0_g1:511	si_a73	TRINITY_DN25467_c0_g1	500	520	511	-21.90	-14.30	0.65296803652968	8.5	1-15,520-506	16-21,505-500[UP3]	......(((((((((((((((&)))))))))))))))......	GAUCCAGGAAAAUAAUUUGGA&UUCAAAUUGUUUUUCAUUAUU	2	0.999999992102954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN25467_c0_g1_511_TPlot.pdf
TRINITY_DN25467_c0_g1:512	si_a72	TRINITY_DN25467_c0_g1	501	521	512	-21.90	-14.70	0.671232876712329	8	1-16,521-506	17-21,505-501[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUCCAGGAAAAUAAUUUGGAG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999969506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN25467_c0_g1_512_TPlot.pdf
TRINITY_DN25467_c0_g1:515	si_s67	TRINITY_DN25467_c0_g1	504	525	515	-25.60	-16.80	0.65625	7.5	1-8,525-518;10-12,515-513;14-20,511-505	9-9,517-516[AILt];13-13,512-512[SIL];21-21,504-504[UP3]	.(((((((.(((..((((((((&))))))))-.))).))))))).	CAGGAAAAUAAUUUGGAGUUGC&GCAACUUC-UAUUUUUUUUCUU	3	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN25467_c0_g1_515_TPlot.pdf
TRINITY_DN2546_c0_g2:840	si_a789	TRINITY_DN2546_c0_g2	829	850	840	-24.80	-19.40	0.782258064516129	9.5	1-8,850-843;9-19,841-831	x-x,842-842[BULt];20-21,830-829[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	AGUGGAAGAUGGAUGGGAUGGA&UCUAUUUU-UCUAUUUUCCAAU	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2546_c0_g2_840_TPlot.pdf
TRINITY_DN2548_c0_g1:1593	si_s76	TRINITY_DN2548_c0_g1	1581	1602	1593	-23.60	-16.50	0.699152542372881	9	3-14,1600-1589;15-19,1587-1583	1-2,1602-1601[UP5];x-x,1588-1588[BULt];20-21,1582-1581[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	UUGAAAGAGAAAGAAAGGGACA&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2548_c0_g1_1593_TPlot.pdf
TRINITY_DN2548_c0_g1:1594	si_s75	TRINITY_DN2548_c0_g1	1582	1603	1594	-24.00	-16.50	0.6875	10	4-15,1600-1589;16-20,1587-1583	1-3,1603-1601[UP5];x-x,1588-1588[BULt];21-21,1582-1582[UP3]	.(((((.((((((((((((...&...))))))))))))-))))).	UGAAAGAGAAAGAAAGGGACAA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2548_c0_g1_1594_TPlot.pdf
TRINITY_DN2548_c0_g1:1595	si_s74	TRINITY_DN2548_c0_g1	1583	1604	1595	-25.00	-16.80	0.672	8	1-2,1604-1603;5-16,1600-1589;17-21,1587-1583	3-4,1602-1601[SIL];x-x,1588-1588[BULt]	(((((.((((((((((((..((&))..))))))))))))-)))))	GAAAGAGAAAGAAAGGGACAAG&CUAUUUUUUUUCUUUC-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2548_c0_g1_1595_TPlot.pdf
TRINITY_DN2548_c0_g1:1749	si_s202	TRINITY_DN2548_c0_g1	1737	1758	1749	-33.60	-22.00	0.654761904761905	7.5	2-6,1757-1753;8-11,1751-1748;12-21,1746-1737	1-1,1758-1758[UP5];7-7,1752-1752[SIL];x-x,1747-1747[BULt]	((((((((((.((((.(((((.&.))))).))))-))))))))))	AACACAGCUGUGUAUCUUCUAU&UUGGAAUGUAC-CAGUUGUGUU	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN2548_c0_g1_1749_TPlot.pdf
TRINITY_DN2548_c0_g1:1863	si_s70	TRINITY_DN2548_c0_g1	1852	1872	1863	-25.80	-16.90	0.655038759689922	8.5	2-16,1871-1857	1-1,1872-1872[UP5];17-21,1856-1852[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACACGAGAAAGAAUGGAAGC&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2548_c0_g1_1863_TPlot.pdf
TRINITY_DN2548_c0_g1:1864	si_s69	TRINITY_DN2548_c0_g1	1853	1873	1864	-23.40	-16.90	0.722222222222222	9.5	3-17,1871-1857	1-2,1873-1872[UP5];18-21,1856-1853[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACACGAGAAAGAAUGGAAGCU&AACUUCUAUUUUUUUUCUUUC	2	0.999999953181051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2548_c0_g1_1864_TPlot.pdf
TRINITY_DN2548_c0_g1:1865	si_s68	TRINITY_DN2548_c0_g1	1854	1875	1865	-23.10	-17.70	0.766233766233766	7.5	1-3,1875-1873;4-18,1871-1857	x-x,1872-1872[BULt];19-21,1856-1854[UP3]	...(((((((((((((((.(((&)))-)))))))))))))))...	CACGAGAAAGAAUGGAAGCUUG&CAA-CUUCUAUUUUUUUUCUUU	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2548_c0_g1_1865_TPlot.pdf
TRINITY_DN2548_c0_g1:1866	si_s67	TRINITY_DN2548_c0_g1	1855	1876	1866	-25.60	-22.00	0.859375	6	1-4,1876-1873;5-19,1871-1857	x-x,1872-1872[BULt];20-21,1856-1855[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	ACGAGAAAGAAUGGAAGCUUGC&GCAA-CUUCUAUUUUUUUUCUU	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2548_c0_g1_1866_TPlot.pdf
TRINITY_DN2548_c0_g1:1867	si_s66	TRINITY_DN2548_c0_g1	1856	1877	1867	-26.30	-22.00	0.836501901140684	6	2-5,1876-1873;6-20,1871-1857	1-1,1877-1877[UP5];x-x,1872-1872[BULt];21-21,1856-1856[UP3]	.(((((((((((((((.((((.&.))))-))))))))))))))).	CGAGAAAGAAUGGAAGCUUGCG&AGCAA-CUUCUAUUUUUUUUCU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2548_c0_g1_1867_TPlot.pdf
TRINITY_DN2548_c0_g1:1868	si_s65	TRINITY_DN2548_c0_g1	1857	1878	1868	-26.00	-21.70	0.834615384615385	7	3-6,1876-1873;7-21,1871-1857	1-2,1878-1877[UP5];x-x,1872-1872[BULt]	(((((((((((((((.((((..&..))))-)))))))))))))))	GAGAAAGAAUGGAAGCUUGCGA&UAGCAA-CUUCUAUUUUUUUUC	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN2548_c0_g1_1868_TPlot.pdf
TRINITY_DN2548_c0_g1:1869	si_s64	TRINITY_DN2548_c0_g1	1858	1879	1869	-24.10	-18.40	0.763485477178423	9	4-7,1876-1873;8-21,1871-1858	1-3,1879-1877[UP5];x-x,1872-1872[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	AGAAAGAAUGGAAGCUUGCGAA&UUAGCAA-CUUCUAUUUUUUUU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2548_c0_g1_1869_TPlot.pdf
TRINITY_DN2548_c0_g1:1870	si_s63	TRINITY_DN2548_c0_g1	1859	1880	1870	-25.80	-17.60	0.682170542635659	10.5	5-8,1876-1873;9-21,1871-1859	1-4,1880-1877[UP5];x-x,1872-1872[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	GAAAGAAUGGAAGCUUGCGAAA&GUUAGCAA-CUUCUAUUUUUUU	2	0.99748780294648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2548_c0_g1_1870_TPlot.pdf
TRINITY_DN2548_c0_g1:1875	si_a602	TRINITY_DN2548_c0_g1	1862	1884	1875	-30.80	-22.00	0.714285714285714	7	1-12,1884-1873;13-17,1870-1866;19-20,1864-1863	x-x,1872-1871[BULt];18-18,1865-1865[SIL];21-21,1862-1862[UP3]	.((.(((((..((((((((((((&))))))))))))--))))).)).	AGAAUGGAAGCUUGCGAAAGUUC&GAAUUUUCGCAA--UUCCAAUCG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN2548_c0_g1_1875_TPlot.pdf
TRINITY_DN2548_c0_g1:1876	si_a601	TRINITY_DN2548_c0_g1	1863	1885	1876	-30.00	-22.70	0.756666666666667	4	1-13,1885-1873;14-18,1870-1866;20-21,1864-1863	x-x,1872-1871[BULt];19-19,1865-1865[SIL]	((.(((((..(((((((((((((&)))))))))))))--))))).))	GAAUGGAAGCUUGCGAAAGUUCU&AGAAUUUUCGCAA--UUCCAAUC	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN2548_c0_g1_1876_TPlot.pdf
TRINITY_DN2548_c0_g1:1877	si_a600	TRINITY_DN2548_c0_g1	1864	1886	1877	-29.70	-21.60	0.727272727272727	6	2-14,1885-1873;15-19,1870-1866	1-1,1886-1886[UP5];x-x,1872-1871[BULt];20-21,1865-1864[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	AAUGGAAGCUUGCGAAAGUUCUU&CAGAAUUUUCGCAA--UUCCAAU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN2548_c0_g1_1877_TPlot.pdf
TRINITY_DN2548_c0_g1:1878	si_a599	TRINITY_DN2548_c0_g1	1865	1887	1878	-30.40	-21.60	0.710526315789474	7	3-15,1885-1873;16-20,1870-1866	1-2,1887-1886[UP5];x-x,1872-1871[BULt];21-21,1865-1865[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	AUGGAAGCUUGCGAAAGUUCUUA&ACAGAAUUUUCGCAA--UUCCAA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN2548_c0_g1_1878_TPlot.pdf
TRINITY_DN25497_c0_g1:130	si_a319	TRINITY_DN25497_c0_g1	119	139	130	-22.40	-14.60	0.651785714285714	11.5	5-18,135-122	1-4,139-136[UP5];19-21,121-119[UP3]	...((((((((((((((....&....))))))))))))))...	ACAGAAAAAAUUAUGGACGUU&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN25497_c0_g1_130_TPlot.pdf
TRINITY_DN2549_c0_g1:1920	si_s775	TRINITY_DN2549_c0_g1	1909	1929	1920	-25.00	-17.00	0.68	10.5	3-15,1927-1915	1-2,1929-1928[UP5];16-21,1914-1909[UP3]	......(((((((((((((..&..)))))))))))))......	AAGAUGGUAGCAAUAGUGAGA&AAUUACUAUUGCUAUAAAACA	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN2549_c0_g1_1920_TPlot.pdf
TRINITY_DN2549_c0_g1:1921	si_s774	TRINITY_DN2549_c0_g1	1910	1930	1921	-24.70	-17.00	0.688259109311741	11.5	4-16,1927-1915	1-3,1930-1928[UP5];17-21,1914-1910[UP3]	.....(((((((((((((...&...))))))))))))).....	AGAUGGUAGCAAUAGUGAGAA&UAAUUACUAUUGCUAUAAAAC	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN2549_c0_g1_1921_TPlot.pdf
TRINITY_DN2549_c0_g1:1922	si_s773	TRINITY_DN2549_c0_g1	1911	1931	1922	-23.10	-17.00	0.735930735930736	12.5	5-17,1927-1915	1-4,1931-1928[UP5];18-21,1914-1911[UP3]	....(((((((((((((....&....)))))))))))))....	GAUGGUAGCAAUAGUGAGAAG&UUAAUUACUAUUGCUAUAAAA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN2549_c0_g1_1922_TPlot.pdf
TRINITY_DN2549_c0_g1:1924	si_s771	TRINITY_DN2549_c0_g1	1913	1933	1924	-25.20	-20.60	0.817460317460318	8.5	1-4,1933-1930;7-19,1927-1915	5-6,1929-1928[SIL];20-21,1914-1913[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	UGGUAGCAAUAGUGAGAAGUC&GAUUAAUUACUAUUGCUAUAA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN2549_c0_g1_1924_TPlot.pdf
TRINITY_DN2549_c0_g1:1925	si_s770	TRINITY_DN2549_c0_g1	1914	1934	1925	-26.60	-21.00	0.789473684210526	8.5	2-5,1933-1930;8-20,1927-1915	1-1,1934-1934[UP5];6-7,1929-1928[SIL];21-21,1914-1914[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	GGUAGCAAUAGUGAGAAGUCU&CGAUUAAUUACUAUUGCUAUA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN2549_c0_g1_1925_TPlot.pdf
TRINITY_DN2549_c0_g1:1926	si_s769	TRINITY_DN2549_c0_g1	1915	1935	1926	-27.00	-20.60	0.762962962962963	9.5	3-6,1933-1930;9-21,1927-1915	1-2,1935-1934[UP5];7-8,1929-1928[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	GUAGCAAUAGUGAGAAGUCUA&ACGAUUAAUUACUAUUGCUAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN2549_c0_g1_1926_TPlot.pdf
TRINITY_DN2549_c0_g1:1927	si_s768	TRINITY_DN2549_c0_g1	1916	1936	1927	-26.80	-19.10	0.712686567164179	11	4-7,1933-1930;10-21,1927-1916	1-3,1936-1934[UP5];8-9,1929-1928[SIL]	((((((((((((..((((...&...))))..))))))))))))	UAGCAAUAGUGAGAAGUCUAA&AACGAUUAAUUACUAUUGCUA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN2549_c0_g1_1927_TPlot.pdf
TRINITY_DN2549_c0_g1:2068	si_s68	TRINITY_DN2549_c0_g1	2057	2078	2068	-23.10	-15.10	0.653679653679654	8.5	3-8,2076-2071;10-21,2068-2057	1-2,2078-2077[UP5];9-9,2070-2069[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	AAAGAAGAAGAAAAAGAAGUCU&CAACUUCU-AUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2549_c0_g1_2068_TPlot.pdf
TRINITY_DN2549_c0_g1:2126	si_s75	TRINITY_DN2549_c0_g1	2115	2135	2126	-24.00	-20.30	0.845833333333333	8.5	5-21,2131-2115	1-4,2135-2132[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGGAAGGAAAGGAAAAAUAAG&UAUUUUUUUUCUUUCCUUUCU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2549_c0_g1_2126_TPlot.pdf
TRINITY_DN254_c0_g1:2592	si_s433	TRINITY_DN254_c0_g1	2581	2602	2592	-21.10	-13.90	0.658767772511848	5.5	1-9,2602-2594;10-16,2592-2586;18-20,2584-2582	x-x,2593-2593[BULt];17-17,2585-2585[SIL];21-21,2581-2581[UP3]	.(((.(((((((.(((((((((&)))))))))-))))))).))).	UUGUUAUAUGUAUGUUAUUGUU&AACAAUAAU-UACAUAUUAUAU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN254_c0_g1_2592_TPlot.pdf
TRINITY_DN254_c0_g1:2595	si_s431	TRINITY_DN254_c0_g1	2583	2604	2595	-21.10	-15.30	0.725118483412322	6	1-11,2604-2594;12-18,2592-2586	x-x,2593-2593[BULt];19-21,2585-2583[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	GUUAUAUGUAUGUUAUUGUUAU&AUAACAAUAAU-UACAUAUUAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN254_c0_g1_2595_TPlot.pdf
TRINITY_DN254_c0_g1:2599	si_s427	TRINITY_DN254_c0_g1	2587	2608	2599	-23.00	-15.60	0.678260869565217	6.5	4-15,2605-2594;16-21,2592-2587	1-3,2608-2606[UP5];x-x,2593-2593[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	UAUGUAUGUUAUUGUUAUAAGA&CUAUAUAACAAUAAU-UACAUA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN254_c0_g1_2599_TPlot.pdf
TRINITY_DN254_c0_g1:2600	si_s426	TRINITY_DN254_c0_g1	2588	2608	2600	-23.60	-15.60	0.661016949152542	3.5	1-3,2608-2606;5-16,2605-2594;17-21,2592-2588	4-4,x-x[BULq];x-x,2593-2593[BULt]	(((((.((((((((((((-(((&))).))))))))))))-)))))	AUGUAUGUUAUUGUUAUA-AGA&UCUAUAUAACAAUAAU-UACAU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN254_c0_g1_2600_TPlot.pdf
TRINITY_DN254_c0_g1:457	si_a207	TRINITY_DN254_c0_g1	446	466	457	-23.90	-18.50	0.774058577405858	5.5	1-5,466-462;8-21,459-446	6-7,461-460[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GUUUAGUUAGUUGAAGUAUUA&UAAUAAAUCGACUAAUUAAAC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a207_TRINITY_DN254_c0_g1_457_TPlot.pdf
TRINITY_DN2552_c0_g1:1049	si_s894	TRINITY_DN2552_c0_g1	1038	1058	1049	-29.10	-21.20	0.728522336769759	10	3-17,1056-1042	1-2,1058-1057[UP5];18-21,1041-1038[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUGAUGAAGAGGAAGUCUGGG&AAUAGGCUUUCUCUUCAAUUU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN2552_c0_g1_1049_TPlot.pdf
TRINITY_DN2552_c0_g1:1060	si_s77	TRINITY_DN2552_c0_g1	1046	1069	1060	-25.50	-19.80	0.776470588235294	5.5	1-14,1069-1056;15-21,1052-1046	x-x,1055-1053[BULt]	(((((((...((((((((((((((&))))))))))))))---)))))))	GAGGAAGUCUGGGAAGAAAAAAAG&UUUUUUUUCUUUCC---UUUCUUC	3	0.999999974655294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2552_c0_g1_1060_TPlot.pdf
TRINITY_DN2552_c0_g1:1065	si_s72	TRINITY_DN2552_c0_g1	1054	1072	1065	-24.10	-15.90	0.659751037344398	7.5	1-4,1072-1069;7-19,1068-1056	5-6,x-x[BULq];20-21,1055-1054[UP3]	..(((((((((((((--((((&))))..)))))))))))))..	CUGGGAAGAAAAAAA--GGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2552_c0_g1_1065_TPlot.pdf
TRINITY_DN2552_c0_g1:690	si_s75	TRINITY_DN2552_c0_g1	680	699	690	-24.00	-15.70	0.654166666666667	4.5	1-13,699-687;15-19,686-682	14-14,x-x[BULq];20-21,681-680[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AUAAAGG-AAGAAAAAGAAUG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2552_c0_g1_690_TPlot.pdf
TRINITY_DN2552_c0_g1:999	si_a769	TRINITY_DN2552_c0_g1	984	1008	999	-26.70	-17.50	0.655430711610487	6	1-14,1008-995;15-21,990-984	x-x,994-991[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	AAGAGUUAAAAGAAUUAAUUAAAAA&UUUUUGAUUGAUUC----AACUCUU	3	0.999956421867691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN2552_c0_g1_999_TPlot.pdf
TRINITY_DN25533_c0_g2:126	si_a506	TRINITY_DN25533_c0_g2	111	135	126	-33.40	-22.70	0.679640718562874	13	1-11,135-125;12-12,120-120;14-19,118-113	x-x,124-121[BULt];13-13,119-119[SIL];20-21,112-111[UP3]	..((((((.(....(((((((((((&)))))))))))----).))))))..	CGGCGUUCGACAACAGGAAGGCGAA&UUCGUCUUCCU----UGGAAUGUAA	3	0.996100152895399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN25533_c0_g2_126_TPlot.pdf
TRINITY_DN25533_c0_g2:127	si_a505	TRINITY_DN25533_c0_g2	112	136	127	-33.30	-23.60	0.708708708708709	12	1-12,136-125;13-13,120-120;15-20,118-113	x-x,124-121[BULt];14-14,119-119[SIL];21-21,112-112[UP3]	.((((((.(....((((((((((((&))))))))))))----).)))))).	GGCGUUCGACAACAGGAAGGCGAAA&UUUCGUCUUCCU----UGGAAUGUA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN25533_c0_g2_127_TPlot.pdf
TRINITY_DN25533_c0_g2:128	si_a504	TRINITY_DN25533_c0_g2	113	137	128	-32.90	-23.90	0.726443768996961	7	1-13,137-125;14-14,120-120;16-21,118-113	x-x,124-121[BULt];15-15,119-119[SIL]	((((((.(....(((((((((((((&)))))))))))))----).))))))	GCGUUCGACAACAGGAAGGCGAAAA&UUUUCGUCUUCCU----UGGAAUGU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN25533_c0_g2_128_TPlot.pdf
TRINITY_DN25533_c0_g2:28	si_a869	TRINITY_DN25533_c0_g2	16	37	28	-24.80	-16.20	0.653225806451613	13	5-14,33-24;15-20,22-17	1-4,37-34[UP5];x-x,23-23[BULt];21-21,16-16[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	CUGCAGCAUGGGUCUUUGUUCU&UUAUUAAAGAUUUA-GUUGCAA	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN25533_c0_g2_28_TPlot.pdf
TRINITY_DN25533_c0_g2:303	si_s875	TRINITY_DN25533_c0_g2	292	312	303	-26.50	-18.60	0.70188679245283	8.5	1-3,312-310;5-18,308-295	4-4,309-309[SIL];19-21,294-292[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AGAGUUUUUGGUUCUGGCACC&GGUCUUAGAACUAAAAAUAAA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s875_TRINITY_DN25533_c0_g2_303_TPlot.pdf
TRINITY_DN25533_c0_g2:356	si_s31	TRINITY_DN25533_c0_g2	345	365	356	-24.80	-16.20	0.653225806451613	9	1-8,365-358;10-16,356-350	9-9,357-357[SIL];17-21,349-345[UP3]	.....(((((((.((((((((&)))))))).))))))).....	UUCUCAGAGAUUGGGUUGCAG&UUGCAACUAAAUCUUUAAUAA	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN25533_c0_g2_356_TPlot.pdf
TRINITY_DN25533_c0_g2:357	si_s30	TRINITY_DN25533_c0_g2	346	366	357	-24.80	-17.80	0.717741935483871	8.5	1-9,366-358;11-17,356-350	10-10,357-357[SIL];18-21,349-346[UP3]	....(((((((.(((((((((&))))))))).)))))))....	UCUCAGAGAUUGGGUUGCAGU&AUUGCAACUAAAUCUUUAAUA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN25533_c0_g2_357_TPlot.pdf
TRINITY_DN25533_c0_g2:360	si_s27	TRINITY_DN25533_c0_g2	349	370	360	-27.00	-19.10	0.707407407407407	7.5	1-3,370-368;4-12,366-358;14-20,356-350	x-x,367-367[BULt];13-13,357-357[SIL];21-21,349-349[UP3]	.(((((((.(((((((((.(((&)))-))))))))).))))))).	CAGAGAUUGGGUUGCAGUACGA&UUG-AUUGCAACUAAAUCUUUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN25533_c0_g2_360_TPlot.pdf
TRINITY_DN25533_c0_g2:361	si_s26	TRINITY_DN25533_c0_g2	350	371	361	-26.70	-18.90	0.707865168539326	7	2-4,370-368;5-13,366-358;15-21,356-350	1-1,371-371[UP5];x-x,367-367[BULt];14-14,357-357[SIL]	(((((((.(((((((((.(((.&.)))-))))))))).)))))))	AGAGAUUGGGUUGCAGUACGAG&AUUG-AUUGCAACUAAAUCUUU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN25533_c0_g2_361_TPlot.pdf
TRINITY_DN25533_c0_g2:362	si_s25	TRINITY_DN25533_c0_g2	351	372	362	-27.10	-18.20	0.671586715867159	9	3-5,370-368;6-14,366-358;16-21,356-351	1-2,372-371[UP5];x-x,367-367[BULt];15-15,357-357[SIL]	((((((.(((((((((.(((..&..)))-))))))))).))))))	GAGAUUGGGUUGCAGUACGAGC&UAUUG-AUUGCAACUAAAUCUU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN25533_c0_g2_362_TPlot.pdf
TRINITY_DN25538_c0_g1:52	si_s899	TRINITY_DN25538_c0_g1	37	61	52	-28.30	-19.10	0.674911660777385	16	1-12,61-50;13-17,45-41	x-x,49-46[BULt];18-21,40-37[UP3]	....(((((....((((((((((((&))))))))))))----)))))....	ACUCGAAAUUUUUUGGAGGGAGGGC&GCUUUCUCUUCA----AUUUCAAUU	4	0.999999752886627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN25538_c0_g1_52_TPlot.pdf
TRINITY_DN2553_c0_g1:1341	si_a483	TRINITY_DN2553_c0_g1	1328	1350	1341	-27.40	-18.30	0.667883211678832	6.5	1-8,1350-1343;10-17,1341-1334;18-21,1331-1328	9-9,1342-1342[SIL];x-x,1333-1332[BULt]	((((..((((((((.((((((((&)))))))).))))))))--))))	GCGGAUCAUAUUCUUUAUAGCAG&UUGUUAUAUAGAAUAUG--UCGU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN2553_c0_g1_1341_TPlot.pdf
TRINITY_DN2553_c0_g1:1342	si_a482	TRINITY_DN2553_c0_g1	1330	1351	1342	-26.70	-17.40	0.651685393258427	7	2-9,1350-1343;11-18,1341-1334;19-20,1332-1331	1-1,1351-1351[UP5];10-10,1342-1342[SIL];x-x,1333-1333[BULt];21-21,1330-1330[UP3]	.((.((((((((.((((((((.&.)))))))).))))))))-)).	GGAUCAUAUUCUUUAUAGCAGC&AUUGUUAUAUAGAAUAUG-UCG	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN2553_c0_g1_1342_TPlot.pdf
TRINITY_DN2553_c0_g1:1343	si_a481	TRINITY_DN2553_c0_g1	1331	1352	1343	-25.60	-16.80	0.65625	8	3-10,1350-1343;12-19,1341-1334;20-21,1332-1331	1-2,1352-1351[UP5];11-11,1342-1342[SIL];x-x,1333-1333[BULt]	((.((((((((.((((((((..&..)))))))).))))))))-))	GAUCAUAUUCUUUAUAGCAGCU&UAUUGUUAUAUAGAAUAUG-UC	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN2553_c0_g1_1343_TPlot.pdf
TRINITY_DN2553_c0_g1:1344	si_a480	TRINITY_DN2553_c0_g1	1333	1353	1344	-23.70	-15.70	0.662447257383966	10	4-11,1350-1343;13-20,1341-1334	1-3,1353-1351[UP5];12-12,1342-1342[SIL];21-21,1333-1333[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UCAUAUUCUUUAUAGCAGCUU&UUAUUGUUAUAUAGAAUAUGU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN2553_c0_g1_1344_TPlot.pdf
TRINITY_DN2553_c0_g1:1454	si_s82	TRINITY_DN2553_c0_g1	1444	1464	1454	-28.90	-19.10	0.660899653979239	3	1-4,1464-1461;5-15,1459-1449;17-21,1448-1444	x-x,1460-1460[BULt];16-16,x-x[BULq]	(((((-(((((((((((.((((&))))-))))))))))).)))))	AAGAA-AAGAAAGGAAACGAAA&UUUC-UUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2553_c0_g1_1454_TPlot.pdf
TRINITY_DN2553_c0_g1:1455	si_s81	TRINITY_DN2553_c0_g1	1445	1465	1455	-28.90	-19.10	0.660899653979239	3	1-5,1465-1461;6-16,1459-1449;18-21,1448-1445	x-x,1460-1460[BULt];17-17,x-x[BULq]	((((-(((((((((((.(((((&)))))-))))))))))).))))	AGAA-AAGAAAGGAAACGAAAA&UUUUC-UUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2553_c0_g1_1455_TPlot.pdf
TRINITY_DN2553_c0_g1:1456	si_s80	TRINITY_DN2553_c0_g1	1446	1466	1456	-28.20	-18.50	0.656028368794326	3	1-6,1466-1461;7-17,1459-1449;19-21,1448-1446	x-x,1460-1460[BULt];18-18,x-x[BULq]	(((-(((((((((((.((((((&))))))-))))))))))).)))	GAA-AAGAAAGGAAACGAAAAA&UUUUUC-UUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2553_c0_g1_1456_TPlot.pdf
TRINITY_DN2553_c0_g1:1457	si_s79	TRINITY_DN2553_c0_g1	1444	1467	1457	-26.20	-18.10	0.690839694656489	5	2-7,1466-1461;8-17,1459-1450;18-21,1447-1444	1-1,1467-1467[UP5];x-x,1460-1460[BULt];x-x,1449-1448[BULt]	((((..((((((((((.((((((.&.))))))-))))))))))--))))	AAGAAAAGAAAGGAAACGAAAAAC&UUUUUUC-UUUCCUUUCU--UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2553_c0_g1_1457_TPlot.pdf
TRINITY_DN2553_c0_g1:1459	si_s77	TRINITY_DN2553_c0_g1	1448	1469	1459	-25.50	-17.40	0.68235294117647	8	4-9,1466-1461;10-20,1459-1449	1-3,1469-1467[UP5];x-x,1460-1460[BULt];21-21,1448-1448[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	AAAGAAAGGAAACGAAAAACAA&UUUUUUUUC-UUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2553_c0_g1_1459_TPlot.pdf
TRINITY_DN2553_c0_g1:1462	si_s75	TRINITY_DN2553_c0_g1	1450	1471	1462	-24.00	-16.50	0.6875	11	6-11,1466-1461;12-21,1459-1450	1-5,1471-1467[UP5];x-x,1460-1460[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	AGAAAGGAAACGAAAAACAAGU&UAUUUUUUUUC-UUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2553_c0_g1_1462_TPlot.pdf
TRINITY_DN2553_c0_g1:445	si_a550	TRINITY_DN2553_c0_g1	431	454	445	-30.90	-20.40	0.660194174757282	10	1-8,454-447;11-16,444-439;17-21,435-431	9-10,446-445[SIL];x-x,438-436[BULt]	(((((...((((((..((((((((&))))))))..))))))---)))))	GGGAGCGUAUGGAGUUAUGGGUUG&CAAUCUAUUUCUUUAU---CUCCC	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN2553_c0_g1_445_TPlot.pdf
TRINITY_DN25549_c0_g1:220	si_a253	TRINITY_DN25549_c0_g1	209	233	220	-41.20	-27.48	0.666990291262136	13.5	1-5,233-229;7-13,223-217;15-20,215-210	6-6,228-224[AILt];14-14,216-216[SIL];21-21,209-209[UP3]	.((((((.(((((((.....(((((&)))))----.))))))).)))))).	GUGUCCUGGAUGCAAGGGAACGGGG&CCCCG----AUUGUAUCGAGGGCAA	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN25549_c0_g1_220_TPlot.pdf
TRINITY_DN25549_c0_g1:234	si_s72	TRINITY_DN25549_c0_g1	222	244	234	-24.10	-16.00	0.663900414937759	6	1-4,244-241;5-14,239-230;15-21,228-222	x-x,240-240[BULt];x-x,229-229[BULt]	(((((((.((((((((((.((((&))))-))))))))))-)))))))	AAGGGAACGGGGAAAAAUAAGAA&UUCU-AUUUUUUUUC-UUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN25549_c0_g1_234_TPlot.pdf
TRINITY_DN25549_c0_g1:243	si_a788	TRINITY_DN25549_c0_g1	230	252	243	-24.80	-16.60	0.669354838709677	10	1-12,252-241;14-19,237-232	13-13,240-238[AILt];20-21,231-230[UP3]	..((((((...((((((((((((&))))))))))))--.))))))..	GGGGAAAAAUAAGAAGAAUGGGA&UUCUAUUUUUCU--AUUUUCCAA	4	0.999999999998901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN25549_c0_g1_243_TPlot.pdf
TRINITY_DN25549_c0_g1:50	si_s188	TRINITY_DN25549_c0_g1	39	59	50	-28.20	-19.16	0.679432624113475	8	1-9,59-51;14-21,46-39	10-13,50-47[SIL]	((((((((....(((((((((&)))))))))....))))))))	AUUCCAAACCAUUUGUUACUC&GAGUAACGAUUAUUUUGGAAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN25549_c0_g1_50_TPlot.pdf
TRINITY_DN2555_c0_g1:1305	si_s742	TRINITY_DN2555_c0_g1	1294	1316	1305	-31.40	-21.56	0.686624203821656	13.5	1-5,1316-1312;9-18,1306-1297	6-8,1311-1307[AILt];19-21,1296-1294[UP3]	...((((((((((.....(((((&)))))--...))))))))))...	UCCAGGGUCAAUCAUUGGUCACC&GGUGA--AUAGAUUGACCUUAAA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN2555_c0_g1_1305_TPlot.pdf
TRINITY_DN25572_c0_g1:2380	si_a784	TRINITY_DN25572_c0_g1	2367	2388	2380	-24.70	-16.30	0.659919028340081	4	1-5,2388-2384;7-13,2383-2377;14-21,2374-2367	6-6,x-x[BULq];x-x,2376-2375[BULt]	((((((((..(((((((-(((((&))))).)))))))--))))))))	AAAAUAGAAAAAAAUAG-AGAGU&ACUCUUCUAUUUU--UCUAUUUU	2	0.999999999999837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN25572_c0_g1_2380_TPlot.pdf
TRINITY_DN2557_c0_g1:1678	si_s515	TRINITY_DN2557_c0_g1	1666	1688	1678	-24.80	-16.70	0.673387096774194	9	1-7,1688-1682;8-11,1680-1677;14-21,1673-1666	x-x,1681-1681[BULt];12-13,1676-1674[AILt]	((((((((...((((.(((((((&)))))))-))))-..))))))))	AUUUCGAAGAAGAGAGAUGUAGA&UCUAUAU-UCUU-AAUUCGAAAU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN2557_c0_g1_1678_TPlot.pdf
TRINITY_DN2557_c0_g1:1679	si_s514	TRINITY_DN2557_c0_g1	1667	1689	1679	-24.80	-16.20	0.653225806451613	8	1-8,1689-1682;9-12,1680-1677;15-21,1673-1667	x-x,1681-1681[BULt];13-14,1676-1674[AILt]	(((((((...((((.((((((((&))))))))-))))-..)))))))	UUUCGAAGAAGAGAGAUGUAGAA&UUCUAUAU-UCUU-AAUUCGAAA	0	0.117568627335051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN2557_c0_g1_1679_TPlot.pdf
TRINITY_DN2557_c0_g1:2922	si_s617	TRINITY_DN2557_c0_g1	2911	2931	2922	-28.30	-19.30	0.681978798586572	5	1-5,2931-2927;7-13,2925-2919;15-21,2917-2911	6-6,2926-2926[SIL];14-14,2918-2918[SIL]	(((((((.(((((((.(((((&))))).))))))).)))))))	GAAAGGUAGCUUGGAGUUGAA&UUUAAAUCCAAGCGAUCUUUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN2557_c0_g1_2922_TPlot.pdf
TRINITY_DN2557_c0_g1:399	si_a414	TRINITY_DN2557_c0_g1	388	410	399	-18.10	-11.90	0.657458563535912	8	1-4,410-407;6-20,403-389	5-5,406-404[AILt];21-21,388-388[UP3]	.(((((((((((((((...((((&))))--.))))))))))))))).	AAUAUUUAUUUAAAUGAAGAAAC&GUUU--AUAUUUAAAUAAAUAUA	2	0.999863474126992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN2557_c0_g1_399_TPlot.pdf
TRINITY_DN2557_c0_g1:401	si_a412	TRINITY_DN2557_c0_g1	390	412	401	-18.30	-12.10	0.66120218579235	7	1-6,412-407;8-21,403-390	7-7,406-404[AILt]	((((((((((((((...((((((&))))))--.))))))))))))))	UAUUUAUUUAAAUGAAGAAACAA&UUGUUU--AUAUUUAAAUAAAUA	4	0.99999987751274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2557_c0_g1_401_TPlot.pdf
TRINITY_DN25582_c0_g1:184	si_a750	TRINITY_DN25582_c0_g1	173	193	184	-39.70	-28.50	0.717884130982368	5	1-8,193-186;10-15,184-179;17-21,177-173	9-9,185-185[SIL];16-16,178-178[SIL]	(((((.((((((.((((((((&)))))))).)))))).)))))	AACCCUGAGGAGAUUCGUGGU&GCCAUGAACCUCCUUUGGGUU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN25582_c0_g1_184_TPlot.pdf
TRINITY_DN25582_c0_g1:186	si_a748	TRINITY_DN25582_c0_g1	175	195	186	-42.00	-29.20	0.695238095238095	6.5	2-10,194-186;12-17,184-179;19-21,177-175	1-1,195-195[UP5];11-11,185-185[SIL];18-18,178-178[SIL]	(((.((((((.(((((((((.&.))))))))).)))))).)))	CCCUGAGGAGAUUCGUGGUCU&UGGCCAUGAACCUCCUUUGGG	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a748_TRINITY_DN25582_c0_g1_186_TPlot.pdf
TRINITY_DN2559_c0_g1:110	si_s525	TRINITY_DN2559_c0_g1	98	119	110	-24.00	-15.80	0.658333333333333	8.5	4-11,116-109;12-21,107-98	1-3,119-117[UP5];x-x,108-108[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	AUCGAAAAUGAAUUUUGAAGAA&UAAUUCGAAAU-CAUUUUUGAU	3	0.999891632392592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN2559_c0_g1_110_TPlot.pdf
TRINITY_DN25601_c0_g1:2371	si_s97	TRINITY_DN25601_c0_g1	2358	2380	2371	-36.30	-25.10	0.691460055096419	6.5	1-14,2380-2367;16-20,2363-2359	15-15,2366-2364[AILt];21-21,2358-2358[UP3]	.(((((...((((((((((((((&))))))))))))))--.))))).	CUCCAACGGUCGAAGUGGAGAAG&CUUCUUCGCUUCGG--AUUGGAA	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN25601_c0_g1_2371_TPlot.pdf
TRINITY_DN25601_c0_g1:4314	si_a113	TRINITY_DN25601_c0_g1	4303	4323	4314	-26.20	-19.70	0.751908396946565	10.5	3-16,4321-4308	1-2,4323-4322[UP5];17-21,4307-4303[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUUUGGCGAGCUCGUGUUCG&AAAAUACGAGCUUGUUUUAUA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN25601_c0_g1_4314_TPlot.pdf
TRINITY_DN25601_c0_g1:4319	si_a108	TRINITY_DN25601_c0_g1	4308	4329	4319	-28.50	-20.50	0.719298245614035	11.5	3-5,4327-4325;8-21,4321-4308	1-2,4329-4328[UP5];6-7,4324-4322[AILt]	((((((((((((((...(((..&..)))-..))))))))))))))	GGCGAGCUCGUGUUCGCAUCAG&AAGAU-AAAAUACGAGCUUGUU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN25601_c0_g1_4319_TPlot.pdf
TRINITY_DN25601_c0_g1:5223	si_a495	TRINITY_DN25601_c0_g1	5210	5232	5223	-31.90	-24.20	0.758620689655172	13	5-12,5228-5221;13-21,5218-5210	1-4,5232-5229[UP5];x-x,5220-5219[BULt]	(((((((((..((((((((....&....))))))))--)))))))))	GGAAGACGAGCAGAGCGACUCCU&AUAUGUCGUUUU--UCGUCUUCC	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN25601_c0_g1_5223_TPlot.pdf
TRINITY_DN25601_c0_g1:533	si_a43	TRINITY_DN25601_c0_g1	522	542	533	-42.30	-28.60	0.67612293144208	9.5	4-14,539-529;16-21,527-522	1-3,542-540[UP5];15-15,528-528[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UCGGCUGCUGGGCCUAUCACG&ACCGGUAGGUCUAGGAGUCGA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN25601_c0_g1_533_TPlot.pdf
TRINITY_DN25601_c0_g1:582	si_a679	TRINITY_DN25601_c0_g1	571	589	582	-35.40	-23.30	0.65819209039548	10	1-5,589-585;8-10,584-582;12-19,580-573	6-7,x-x[BULq];11-11,581-581[SIL];20-21,572-571[UP3]	..((((((((.(((--(((((&)))))..))).))))))))..	AACGGAGCCGGGUG--UGAGG&CCUUAUUCACGCGGUUUCGAA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a679_TRINITY_DN25601_c0_g1_582_TPlot.pdf
TRINITY_DN25601_c0_g1:656	si_s202	TRINITY_DN25601_c0_g1	645	662	656	-33.60	-22.00	0.654761904761905	9.5	2-6,661-657;10-20,656-646	1-1,662-662[UP5];7-9,x-x[BULq];21-21,645-645[UP3]	.(((((((((((---(((((.&.)))))...))))))))))).	UGCGCAGCUGGU---UUCCAU&UUGGAAUGUACCAGUUGUGUU	2	0.982048939284292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN25601_c0_g1_656_TPlot.pdf
TRINITY_DN25601_c0_g1:657	si_s201	TRINITY_DN25601_c0_g1	646	663	657	-33.60	-22.00	0.654761904761905	10.5	3-7,661-657;11-21,656-646	1-2,663-662[UP5];8-10,x-x[BULq]	(((((((((((---(((((..&..)))))...)))))))))))	GCGCAGCUGGU---UUCCAUG&UUUGGAAUGUACCAGUUGUGU	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN25601_c0_g1_657_TPlot.pdf
TRINITY_DN2560_c0_g1:1252	si_a799	TRINITY_DN2560_c0_g1	1237	1261	1252	-32.50	-22.10	0.68	9	1-3,1261-1259;5-17,1257-1245;18-20,1240-1238	4-4,1258-1258[SIL];x-x,1244-1241[BULt];21-21,1237-1237[UP3]	.(((....(((((((((((((.(((&))).)))))))))))))----))).	AUCGAGAUCUUCGGGUUGGAACGUA&UAUUUUCCAAUCCGAAG----CGAA	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN2560_c0_g1_1252_TPlot.pdf
TRINITY_DN2560_c0_g1:1255	si_a796	TRINITY_DN2560_c0_g1	1244	1264	1255	-32.70	-25.50	0.779816513761468	5.5	2-6,1263-1259;8-20,1257-1245	1-1,1264-1264[UP5];7-7,1258-1258[SIL];21-21,1244-1244[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UCUUCGGGUUGGAACGUAGAC&UUCUAUUUUCCAAUCCGAAGC	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN2560_c0_g1_1255_TPlot.pdf
TRINITY_DN2560_c0_g1:1259	si_a792	TRINITY_DN2560_c0_g1	1248	1268	1259	-27.60	-20.10	0.728260869565217	12.5	6-10,1263-1259;12-21,1257-1248	1-5,1268-1264[UP5];11-11,1258-1258[SIL]	((((((((((.(((((.....&.....))))).))))))))))	CGGGUUGGAACGUAGACUGAU&AUUUUUCUAUUUUCCAAUCCG	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2560_c0_g1_1259_TPlot.pdf
TRINITY_DN2560_c0_g1:1407	si_s79	TRINITY_DN2560_c0_g1	1396	1416	1407	-26.20	-18.00	0.687022900763359	7	1-12,1416-1405;14-18,1403-1399	13-13,1404-1404[SIL];19-21,1398-1396[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GACGAGAACGGAGAGAAAGAG&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2560_c0_g1_1407_TPlot.pdf
TRINITY_DN2560_c0_g1:1408	si_s78	TRINITY_DN2560_c0_g1	1397	1417	1408	-26.20	-18.10	0.690839694656489	7.5	2-13,1416-1405;15-19,1403-1399	1-1,1417-1417[UP5];14-14,1404-1404[SIL];20-21,1398-1397[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	ACGAGAACGGAGAGAAAGAGC&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2560_c0_g1_1408_TPlot.pdf
TRINITY_DN2560_c0_g1:1409	si_s77	TRINITY_DN2560_c0_g1	1398	1418	1409	-25.50	-18.10	0.709803921568627	8.5	3-14,1416-1405;16-20,1403-1399	1-2,1418-1417[UP5];15-15,1404-1404[SIL];21-21,1398-1398[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	CGAGAACGGAGAGAAAGAGCU&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2560_c0_g1_1409_TPlot.pdf
TRINITY_DN2560_c0_g1:1410	si_s76	TRINITY_DN2560_c0_g1	1399	1419	1410	-23.60	-18.10	0.766949152542373	9.5	4-15,1416-1405;17-21,1403-1399	1-3,1419-1417[UP5];16-16,1404-1404[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GAGAACGGAGAGAAAGAGCUG&AUUUUUUUUCUUUCCUUUCUU	2	0.999999968951046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2560_c0_g1_1410_TPlot.pdf
TRINITY_DN2560_c0_g1:1411	si_s75	TRINITY_DN2560_c0_g1	1400	1420	1411	-24.00	-16.90	0.704166666666667	10.5	5-16,1416-1405;18-21,1403-1400	1-4,1420-1417[UP5];17-17,1404-1404[SIL]	((((.((((((((((((....&....)))))))))))).))))	AGAACGGAGAGAAAGAGCUGC&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2560_c0_g1_1411_TPlot.pdf
TRINITY_DN25611_c0_g1:354	si_s77	TRINITY_DN25611_c0_g1	342	363	354	-25.50	-17.70	0.694117647058824	8	1-16,363-348;17-18,346-345	x-x,347-347[BULt];19-21,344-342[UP3]	...((.((((((((((((((((&))))))))))))))))-))...	UUUGAUAGGGAGAGAGAGAAAG&UUUUUUUUCUUUCCUU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25611_c0_g1_354_TPlot.pdf
TRINITY_DN25611_c0_g1:355	si_s76	TRINITY_DN25611_c0_g1	343	364	355	-23.60	-19.30	0.817796610169491	7.5	1-17,364-348;18-19,346-345	x-x,347-347[BULt];20-21,344-343[UP3]	..((.(((((((((((((((((&)))))))))))))))))-))..	UUGAUAGGGAGAGAGAGAAAGU&AUUUUUUUUCUUUCCUU-UCUU	2	0.999116901745928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN25611_c0_g1_355_TPlot.pdf
TRINITY_DN25611_c0_g1:358	si_s73	TRINITY_DN25611_c0_g1	347	367	358	-24.00	-19.50	0.8125	9	3-20,365-348	1-2,367-366[UP5];21-21,347-347[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UAGGGAGAGAGAGAAAGUGCC&UCUAUUUUUUUUCUUUCCUUU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN25611_c0_g1_358_TPlot.pdf
TRINITY_DN25611_c0_g1:359	si_s72	TRINITY_DN25611_c0_g1	348	368	359	-24.10	-19.50	0.809128630705394	10	4-21,365-348	1-3,368-366[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGGAGAGAGAGAAAGUGCCG&UUCUAUUUUUUUUCUUUCCUU	2	0.966134296826891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN25611_c0_g1_359_TPlot.pdf
TRINITY_DN25611_c0_g1:360	si_s71	TRINITY_DN25611_c0_g1	349	369	360	-25.70	-18.90	0.735408560311284	11.5	5-21,365-349	1-4,369-366[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGGAGAGAGAGAAAGUGCCGU&CUUCUAUUUUUUUUCUUUCCU	3	0.999999977554128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN25611_c0_g1_360_TPlot.pdf
TRINITY_DN25611_c0_g1:361	si_s70	TRINITY_DN25611_c0_g1	350	370	361	-25.80	-17.80	0.689922480620155	13	6-21,365-350	1-5,370-366[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGAGAGAGAAAGUGCCGUC&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN25611_c0_g1_361_TPlot.pdf
TRINITY_DN25611_c0_g1:407	si_a486	TRINITY_DN25611_c0_g1	395	416	407	-24.90	-16.50	0.662650602409639	7	2-11,415-406;13-17,404-400;18-21,398-395	1-1,416-416[UP5];12-12,405-405[SIL];x-x,399-399[BULt]	((((.(((((.((((((((((.&.)))))))))).)))))-))))	AAAGCCGACGCAUUCUGUGUAU&UUAUAUAGAAUAUGUCG-UUUU	2	0.979157316154238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN25611_c0_g1_407_TPlot.pdf
TRINITY_DN25620_c0_g1:68	si_a392	TRINITY_DN25620_c0_g1	57	77	68	-22.80	-15.30	0.671052631578947	11.5	6-19,72-59	1-5,77-73[UP5];20-21,58-57[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUAUAAUUCUAUAUUCAGAAU&AUUAAGAAUAUAGAAUUGUUU	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN25620_c0_g1_68_TPlot.pdf
TRINITY_DN25620_c0_g1:69	si_a391	TRINITY_DN25620_c0_g1	58	78	69	-22.80	-15.30	0.671052631578947	12.5	7-20,72-59	1-6,78-73[UP5];21-21,58-58[UP3]	.((((((((((((((......&......)))))))))))))).	UAUAAUUCUAUAUUCAGAAUA&AAUUAAGAAUAUAGAAUUGUU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN25620_c0_g1_69_TPlot.pdf
TRINITY_DN2562_c0_g2:1115	si_s79	TRINITY_DN2562_c0_g2	1104	1129	1115	-26.20	-17.90	0.683206106870229	16	4-9,1126-1121;10-20,1115-1105	1-3,1129-1127[UP5];x-x,1120-1116[BULt];21-21,1104-1104[UP3]	.(((((((((((.....((((((...&...))))))-----))))))))))).	UAGAAGAAAGGAUUACAAAGAAAUUG&UUUUUUCUU-----UCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2562_c0_g2_1115_TPlot.pdf
TRINITY_DN2562_c0_g2:1121	si_s78	TRINITY_DN2562_c0_g2	1105	1130	1121	-26.20	-17.90	0.683206106870229	17	5-10,1126-1121;11-21,1115-1105	1-4,1130-1127[UP5];x-x,1120-1116[BULt]	(((((((((((.....((((((....&....))))))-----)))))))))))	AGAAGAAAGGAUUACAAAGAAAUUGG&UUUUUUUCUU-----UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2562_c0_g2_1121_TPlot.pdf
TRINITY_DN2562_c0_g2:1122	si_s77	TRINITY_DN2562_c0_g2	1106	1131	1122	-25.50	-16.80	0.658823529411765	19	6-11,1126-1121;12-21,1115-1106	1-5,1131-1127[UP5];x-x,1120-1116[BULt]	((((((((((.....((((((.....&.....))))))-----))))))))))	GAAGAAAGGAUUACAAAGAAAUUGGU&UUUUUUUUCUU-----UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2562_c0_g2_1122_TPlot.pdf
TRINITY_DN2562_c0_g2:280	si_s1	TRINITY_DN2562_c0_g2	269	289	280	-18.70	-14.30	0.764705882352941	12.5	7-21,283-269	1-6,289-284[UP5]	(((((((((((((((......&......)))))))))))))))	UGAUAAUAAGUGAUAGCGAUU&UUUUUAUAUUACUUAUUAUUA	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN2562_c0_g2_280_TPlot.pdf
TRINITY_DN25640_c0_g1:227	si_s96	TRINITY_DN25640_c0_g1	218	236	227	-37.20	-25.80	0.693548387096774	3	1-13,236-224;16-20,223-219	14-15,x-x[BULq];21-21,218-218[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	GCCAAU--GAAGCGAAGAAGA&UCUUCUUCGCUUCGGAUUGGA	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN25640_c0_g1_227_TPlot.pdf
TRINITY_DN25643_c0_g1:633	si_a615	TRINITY_DN25643_c0_g1	623	644	633	-35.50	-25.50	0.71830985915493	8	1-7,644-638;8-11,635-632;13-20,631-624	x-x,637-636[BULt];12-12,x-x[BULq];21-21,623-623[UP3]	.((((((((-((((..(((((((&)))))))--)))).)))))))).	GGGUACGCC-AGUCCCGAUUGGA&UCCAAUC--GACUAGGCGUAUUA	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a615_TRINITY_DN25643_c0_g1_633_TPlot.pdf
TRINITY_DN2564_c0_g1:861	si_a329	TRINITY_DN2564_c0_g1	850	870	861	-29.60	-19.90	0.672297297297297	8	1-7,870-864;10-13,861-858;15-15,856-856;17-21,854-850	8-9,863-862[SIL];14-14,857-857[SIL];16-16,855-855[SIL]	(((((.(.((((..(((((((&)))))))..)))).).)))))	CGGGAGAUGGAAGUAAAGAGU&AUUUUUUUAUUCCUUGUCCCG	4	0.999999411941571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2564_c0_g1_861_TPlot.pdf
TRINITY_DN2565_c0_g1:2457	si_a633	TRINITY_DN2565_c0_g1	2445	2466	2457	-26.40	-17.50	0.662878787878788	5	1-16,2466-2451;17-20,2449-2446	x-x,2450-2450[BULt];21-21,2445-2445[UP3]	.((((.((((((((((((((((&))))))))))))))))-)))).	AAUUCAAAAAAAAUUGGCAUAG&UUAUGUCGAUUUUUUU-GAGUA	4	0.999999999796303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2565_c0_g1_2457_TPlot.pdf
TRINITY_DN2565_c0_g1:712	si_a333	TRINITY_DN2565_c0_g1	701	721	712	-30.60	-20.00	0.65359477124183	11	3-15,719-707	1-2,721-720[UP5];16-21,706-701[UP3]	......(((((((((((((..&..)))))))))))))......	UUAUAUGGACAAGGAGUGAUG&UUUUAUUCCUUGUCCCGAAAA	2	0.999476415612255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2565_c0_g1_712_TPlot.pdf
TRINITY_DN2565_c0_g1:714	si_a331	TRINITY_DN2565_c0_g1	703	723	714	-30.60	-20.00	0.65359477124183	13	5-17,719-707	1-4,723-720[UP5];18-21,706-703[UP3]	....(((((((((((((....&....)))))))))))))....	AUAUGGACAAGGAGUGAUGUU&UUUUUUAUUCCUUGUCCCGAA	3	0.999999787662861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2565_c0_g1_714_TPlot.pdf
TRINITY_DN2565_c0_g1:715	si_a330	TRINITY_DN2565_c0_g1	704	724	715	-30.50	-20.00	0.655737704918033	14	6-18,719-707	1-5,724-720[UP5];19-21,706-704[UP3]	...(((((((((((((.....&.....)))))))))))))...	UAUGGACAAGGAGUGAUGUUA&UUUUUUUAUUCCUUGUCCCGA	3	0.999999903584718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN2565_c0_g1_715_TPlot.pdf
TRINITY_DN2565_c0_g1:717	si_a328	TRINITY_DN2565_c0_g1	706	728	717	-30.10	-20.38	0.677076411960133	11.5	1-5,728-724;8-20,719-707	6-7,723-720[AILt];21-21,706-706[UP3]	.(((((((((((((....(((((&)))))--..))))))))))))).	UGGACAAGGAGUGAUGUUAAAUU&GAUUU--UUUUAUUCCUUGUCCC	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2565_c0_g1_717_TPlot.pdf
TRINITY_DN2565_c0_g1:718	si_a327	TRINITY_DN2565_c0_g1	707	729	718	-28.40	-20.38	0.717605633802817	12	2-6,728-724;9-21,719-707	1-1,729-729[UP5];7-8,723-720[AILt]	(((((((((((((....(((((.&.)))))--..)))))))))))))	GGACAAGGAGUGAUGUUAAAUUC&UGAUUU--UUUUAUUCCUUGUCC	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2565_c0_g1_718_TPlot.pdf
TRINITY_DN25667_c0_g1:1335	si_s602	TRINITY_DN25667_c0_g1	1324	1344	1335	-28.10	-18.90	0.672597864768683	8	1-15,1344-1330	16-21,1329-1324[UP3]	......(((((((((((((((&)))))))))))))))......	GACCACAAAGAUUUGUUUGGA&UCCAAGCGAAUCUUUUUUAAA	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN25667_c0_g1_1335_TPlot.pdf
TRINITY_DN25667_c0_g1:1336	si_s601	TRINITY_DN25667_c0_g1	1325	1345	1336	-28.30	-20.20	0.713780918727915	7	1-16,1345-1330	17-21,1329-1325[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACCACAAAGAUUUGUUUGGAU&AUCCAAGCGAAUCUUUUUUAA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN25667_c0_g1_1336_TPlot.pdf
TRINITY_DN25675_c2_g1:447	si_a625	TRINITY_DN25675_c2_g1	437	456	447	-30.60	-20.00	0.65359477124183	9.5	3-12,454-445;14-15,443-442;17-21,441-437	1-2,456-455[UP5];13-13,444-444[SIL];16-16,x-x[BULq]	(((((-((.((((((((((..&..)))))))))).)).)))))	GAAAU-GAGGUGGUGCGCCAU&UAGGCGUAUUAUGUCGAUUUU	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN25675_c2_g1_447_TPlot.pdf
TRINITY_DN2567_c0_g1:1021	si_s689	TRINITY_DN2567_c0_g1	1010	1029	1021	-26.50	-17.70	0.667924528301887	8	1-9,1029-1021;11-18,1020-1013	10-10,x-x[BULq];19-21,1012-1010[UP3]	...((((((((-(((((((((&))))))))).))))))))...	UGUUUGGCUGA-UGAACUCAU&AUGAGUUUAAUUAGUCGAUUU	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN2567_c0_g1_1021_TPlot.pdf
TRINITY_DN2567_c0_g1:276	si_a789	TRINITY_DN2567_c0_g1	265	285	276	-24.80	-16.40	0.661290322580645	11.5	3-5,283-281;8-20,278-266	1-2,285-284[UP5];6-7,280-279[SIL];21-21,265-265[UP3]	.(((((((((((((..(((..&..)))..))))))))))))).	UUUGGAAGAUGGAAUUGUGAA&UCUAUUUUUCUAUUUUCCAAU	2	0.999999979915469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2567_c0_g1_276_TPlot.pdf
TRINITY_DN2567_c0_g1:277	si_a788	TRINITY_DN2567_c0_g1	266	285	277	-24.80	-16.70	0.673387096774194	8.5	1-3,285-283;5-6,282-281;9-21,278-266	4-4,x-x[BULq];7-8,280-279[SIL]	(((((((((((((..((-(((&))).))..)))))))))))))	UUGGAAGAUGGAAUUGU-GAA&UUCUAUUUUUCUAUUUUCCAA	2	0.99999976093547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2567_c0_g1_277_TPlot.pdf
TRINITY_DN2567_c0_g1:278	si_a787	TRINITY_DN2567_c0_g1	267	286	278	-26.30	-18.70	0.711026615969582	8	1-4,286-283;6-7,282-281;10-21,278-267	5-5,x-x[BULq];8-9,280-279[SIL]	((((((((((((..((-((((&)))).))..))))))))))))	UGGAAGAUGGAAUUGU-GAAG&CUUCUAUUUUUCUAUUUUCCA	2	0.999514091019493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2567_c0_g1_278_TPlot.pdf
TRINITY_DN2567_c0_g1:279	si_a786	TRINITY_DN2567_c0_g1	268	287	279	-26.60	-18.60	0.699248120300752	8	1-5,287-283;7-8,282-281;11-21,278-268	6-6,x-x[BULq];9-10,280-279[SIL]	(((((((((((..((-(((((&))))).))..)))))))))))	GGAAGAUGGAAUUGU-GAAGA&UCUUCUAUUUUUCUAUUUUCC	2	0.999866830620927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2567_c0_g1_279_TPlot.pdf
TRINITY_DN2567_c0_g1:280	si_a603	TRINITY_DN2567_c0_g1	270	289	280	-29.80	-20.60	0.691275167785235	6	2-16,288-274;18-19,273-272	1-1,289-289[UP5];17-17,x-x[BULq];20-21,271-270[UP3]	..((-(((((((((((((((.&.))))))))))))))).))..	AAGA-UGGAAUUGUGAAGAUG&AAUUUUCGCAAUUCCAAUCGA	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN2567_c0_g1_280_TPlot.pdf
TRINITY_DN2567_c0_g1:281	si_a602	TRINITY_DN2567_c0_g1	271	290	281	-30.80	-20.60	0.668831168831169	7	3-17,288-274;19-20,273-272	1-2,290-289[UP5];18-18,x-x[BULq];21-21,271-271[UP3]	.((-(((((((((((((((..&..))))))))))))))).)).	AGA-UGGAAUUGUGAAGAUGU&GAAUUUUCGCAAUUCCAAUCG	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN2567_c0_g1_281_TPlot.pdf
TRINITY_DN2567_c0_g1:282	si_a601	TRINITY_DN2567_c0_g1	272	291	282	-30.00	-20.20	0.673333333333333	8	4-18,288-274;20-21,273-272	1-3,291-289[UP5];19-19,x-x[BULq]	((-(((((((((((((((...&...))))))))))))))).))	GA-UGGAAUUGUGAAGAUGUC&AGAAUUUUCGCAAUUCCAAUC	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN2567_c0_g1_282_TPlot.pdf
TRINITY_DN2567_c0_g1:283	si_a600	TRINITY_DN2567_c0_g1	272	292	283	-29.70	-19.80	0.666666666666667	11	5-19,288-274	1-4,292-289[UP5];20-21,273-272[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAUGGAAUUGUGAAGAUGUCC&CAGAAUUUUCGCAAUUCCAAU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN2567_c0_g1_283_TPlot.pdf
TRINITY_DN2567_c0_g1:284	si_a599	TRINITY_DN2567_c0_g1	273	293	284	-30.40	-19.80	0.651315789473684	12	6-20,288-274	1-5,293-289[UP5];21-21,273-273[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUGGAAUUGUGAAGAUGUCCA&ACAGAAUUUUCGCAAUUCCAA	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN2567_c0_g1_284_TPlot.pdf
TRINITY_DN2567_c0_g1:285	si_a598	TRINITY_DN2567_c0_g1	274	291	285	-32.30	-21.20	0.656346749226006	7.5	1-4,291-288;8-21,287-274	5-7,x-x[BULq]	((((((((((((((---((((&))))...))))))))))))))	UGGAAUUGUGAAGA---UGUC&GACAGAAUUUUCGCAAUUCCA	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN2567_c0_g1_285_TPlot.pdf
TRINITY_DN2567_c0_g1:286	si_a597	TRINITY_DN2567_c0_g1	275	292	286	-34.00	-23.70	0.697058823529412	7.5	1-5,292-288;9-21,287-275	6-8,x-x[BULq]	(((((((((((((---(((((&)))))...)))))))))))))	GGAAUUGUGAAGA---UGUCC&GGACAGAAUUUUCGCAAUUCC	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a597_TRINITY_DN2567_c0_g1_286_TPlot.pdf
TRINITY_DN2567_c0_g1:290	si_a726	TRINITY_DN2567_c0_g1	279	299	290	-39.00	-26.00	0.666666666666667	6.5	1-6,299-294;8-19,292-281	7-7,293-293[SIL];20-21,280-279[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	UUGUGAAGAUGUCCAAGUAGC&GUUACUCGGGCAUCUUUACCC	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a726_TRINITY_DN2567_c0_g1_290_TPlot.pdf
TRINITY_DN2567_c0_g1:291	si_a725	TRINITY_DN2567_c0_g1	280	300	291	-38.10	-26.10	0.68503937007874	6.5	2-7,299-294;9-20,292-281	1-1,300-300[UP5];8-8,293-293[SIL];21-21,280-280[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	UGUGAAGAUGUCCAAGUAGCA&CGUUACUCGGGCAUCUUUACC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN2567_c0_g1_291_TPlot.pdf
TRINITY_DN2567_c0_g1:292	si_a724	TRINITY_DN2567_c0_g1	281	301	292	-36.70	-26.10	0.711171662125341	7.5	3-8,299-294;10-21,292-281	1-2,301-300[UP5];9-9,293-293[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GUGAAGAUGUCCAAGUAGCAG&UCGUUACUCGGGCAUCUUUAC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN2567_c0_g1_292_TPlot.pdf
TRINITY_DN2567_c0_g1:293	si_a723	TRINITY_DN2567_c0_g1	282	302	293	-35.10	-23.20	0.660968660968661	9	4-9,299-294;11-21,292-282	1-3,302-300[UP5];10-10,293-293[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UGAAGAUGUCCAAGUAGCAGA&AUCGUUACUCGGGCAUCUUUA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN2567_c0_g1_293_TPlot.pdf
TRINITY_DN25696_c0_g1:1475	si_a226	TRINITY_DN25696_c0_g1	1464	1487	1475	-27.60	-18.60	0.673913043478261	14	1-6,1487-1482;7-18,1478-1467	x-x,1481-1479[BULt];19-21,1466-1464[UP3]	...((((((((((((...((((((&))))))---))))))))))))...	UGGGGUUGUGGAGAUCAGGUGAGU&ACUCAU---GUUUCUAUAAUCAAU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN25696_c0_g1_1475_TPlot.pdf
TRINITY_DN25698_c0_g1:3675	si_a5	TRINITY_DN25698_c0_g1	3664	3684	3675	-31.10	-20.30	0.652733118971061	11	5-7,3680-3678;9-19,3676-3666	1-4,3684-3681[UP5];8-8,3677-3677[SIL];20-21,3665-3664[UP3]	..(((((((((((.(((....&....))).)))))))))))..	AGAGGCUUUCUCUCCAAAUCU&GAAAUUGAAGAGAAAGCCUAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN25698_c0_g1_3675_TPlot.pdf
TRINITY_DN25698_c0_g1:3708	si_a89	TRINITY_DN25698_c0_g1	3697	3717	3708	-26.40	-17.50	0.662878787878788	7.5	1-6,3717-3712;8-18,3710-3700;20-20,3698-3698	7-7,3711-3711[SIL];19-19,3699-3699[SIL];21-21,3697-3697[UP3]	.(.(((((((((((.((((((&)))))).))))))))))).).	GUGGUUGCCUUUUUGUGAUGA&UUAUUAAGAAAAGGUAACGAA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN25698_c0_g1_3708_TPlot.pdf
TRINITY_DN25698_c0_g1:3711	si_a86	TRINITY_DN25698_c0_g1	3700	3717	3711	-26.60	-18.10	0.680451127819549	9.5	1-7,3717-3711;11-21,3710-3700	8-10,x-x[BULq]	(((((((((((---(((((((&)))))))...)))))))))))	GUUGCCUUUUU---GUGAUGA&UCAUUAUUAAGAAAAGGUAAC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN25698_c0_g1_3711_TPlot.pdf
TRINITY_DN25698_c0_g1:3786	si_s82	TRINITY_DN25698_c0_g1	3771	3797	3786	-28.90	-18.80	0.650519031141869	8.5	1-4,3797-3794;5-17,3791-3779;18-21,3774-3771	x-x,3793-3792[BULt];x-x,3778-3775[BULt]	((((....(((((((((((((..((((&))))--)))))))))))))----))))	AAGAAAUUAGGAGAAAGGAAAAUGAAA&UUUC--UUUCCUUUCUUCU----UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN25698_c0_g1_3786_TPlot.pdf
TRINITY_DN25698_c0_g1:3791	si_s77	TRINITY_DN25698_c0_g1	3780	3802	3791	-25.50	-18.20	0.713725490196078	10.5	3-9,3800-3794;10-21,3791-3780	1-2,3802-3801[UP5];x-x,3793-3792[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	GGAGAAAGGAAAAUGAAAGGGUG&UUUUUUUUC--UUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25698_c0_g1_3791_TPlot.pdf
TRINITY_DN25698_c0_g1:3792	si_s76	TRINITY_DN25698_c0_g1	3781	3801	3792	-23.60	-17.10	0.724576271186441	8.5	1-8,3801-3794;11-21,3791-3781	9-10,3793-3792[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	GAGAAAGGAAAAUGAAAGGGU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN25698_c0_g1_3792_TPlot.pdf
TRINITY_DN25698_c0_g1:3793	si_s75	TRINITY_DN25698_c0_g1	3782	3802	3793	-24.00	-16.30	0.679166666666667	8.5	1-9,3802-3794;12-21,3791-3782	10-11,3793-3792[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	AGAAAGGAAAAUGAAAGGGUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN25698_c0_g1_3793_TPlot.pdf
TRINITY_DN25698_c0_g1:3834	si_s68	TRINITY_DN25698_c0_g1	3823	3843	3834	-23.10	-15.90	0.688311688311688	12.5	6-21,3838-3823	1-5,3843-3839[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAGAGAGAGAAUGGACUGAA&CAACUUCUAUUUUUUUUCUUU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN25698_c0_g1_3834_TPlot.pdf
TRINITY_DN25698_c1_g1:596	si_s75	TRINITY_DN25698_c1_g1	584	605	596	-24.00	-16.20	0.675	5	1-14,605-592;15-19,590-586	x-x,591-591[BULt];20-21,585-584[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	CUAGGGGAAAAGAAAGAAAAUA&UAUUUUUUUUCUUU-CCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN25698_c1_g1_596_TPlot.pdf
TRINITY_DN25698_c1_g1:599	si_s72	TRINITY_DN25698_c1_g1	587	608	599	-24.10	-15.80	0.655601659751037	8	4-17,605-592;18-21,590-587	1-3,608-606[UP5];x-x,591-591[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	GGGGAAAAGAAAGAAAAUAUAG&UUCUAUUUUUUUUCUUU-CCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN25698_c1_g1_599_TPlot.pdf
TRINITY_DN2569_c0_g1:4230	si_a691	TRINITY_DN2569_c0_g1	4219	4239	4230	-36.20	-24.30	0.671270718232044	6.5	1-12,4239-4228;15-16,4225-4224;18-19,4222-4221	13-14,4227-4226[SIL];17-17,4223-4223[SIL];20-21,4220-4219[UP3]	..((.((..((((((((((((&))))))))))))..)).))..	AAGCGAGCGGUGUUUGAAACC&GGUUUCGAACACAACUGGUAC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a691_TRINITY_DN2569_c0_g1_4230_TPlot.pdf
TRINITY_DN2569_c0_g1:4273	si_s379	TRINITY_DN2569_c0_g1	4261	4285	4273	-42.50	-27.70	0.651764705882353	11	1-3,4285-4283;4-8,4281-4277;9-13,4274-4270;14-19,4268-4263	x-x,4282-4282[BULt];x-x,4276-4275[BULt];x-x,4269-4269[BULt];20-21,4262-4261[UP3]	..((((((.(((((..(((((.(((&)))-)))))--)))))-))))))..	CGGUGAGGACGGACCGGCGCGAAGU&GCU-CGCGU--GUCCG-CCUUACAU	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN2569_c0_g1_4273_TPlot.pdf
TRINITY_DN2569_c0_g1:6618	si_s572	TRINITY_DN2569_c0_g1	6607	6627	6618	-30.10	-20.70	0.687707641196013	6	1-8,6627-6620;10-19,6618-6609	9-9,6619-6619[SIL];20-21,6608-6607[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	GCUUUUUUUGUUGCUUGUUCC&GGGACAAGGAAUAAAAAAAUC	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s572_TRINITY_DN2569_c0_g1_6618_TPlot.pdf
TRINITY_DN2569_c0_g1:6619	si_s571	TRINITY_DN2569_c0_g1	6608	6628	6619	-29.60	-21.10	0.712837837837838	5.5	2-9,6627-6620;11-20,6618-6609	1-1,6628-6628[UP5];10-10,6619-6619[SIL];21-21,6608-6608[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	CUUUUUUUGUUGCUUGUUCCU&CGGGACAAGGAAUAAAAAAAU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN2569_c0_g1_6619_TPlot.pdf
TRINITY_DN2569_c0_g1:6952	si_s816	TRINITY_DN2569_c0_g1	6941	6963	6952	-24.90	-16.70	0.670682730923695	9	1-7,6963-6957;8-20,6954-6942	x-x,6956-6955[BULt];21-21,6941-6941[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	CUUUGUUGUUAGGAUUAAGGGUG&UACCUUU--UCUUAAUAAUGAAA	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN2569_c0_g1_6952_TPlot.pdf
TRINITY_DN2569_c0_g1:6953	si_s815	TRINITY_DN2569_c0_g1	6942	6964	6953	-25.00	-16.40	0.656	9.5	2-8,6963-6957;9-21,6954-6942	1-1,6964-6964[UP5];x-x,6956-6955[BULt]	(((((((((((((..(((((((.&.)))))))--)))))))))))))	UUUGUUGUUAGGAUUAAGGGUGU&UUACCUUU--UCUUAAUAAUGAA	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN2569_c0_g1_6953_TPlot.pdf
TRINITY_DN2569_c0_g1:6964	si_a409	TRINITY_DN2569_c0_g1	6953	6973	6964	-19.50	-12.80	0.656410256410256	10	1-15,6973-6959	16-21,6958-6953[UP3]	......(((((((((((((((&)))))))))))))))......	GAUUAAGGGUGUGAACAAAAU&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2569_c0_g1_6964_TPlot.pdf
TRINITY_DN2570_c0_g1:1581	si_s8	TRINITY_DN2570_c0_g1	1567	1590	1581	-21.30	-14.20	0.666666666666667	14	4-12,1587-1579;13-21,1575-1567	1-3,1590-1588[UP5];x-x,1578-1576[BULt]	(((((((((...(((((((((...&...)))))))))---)))))))))	AAUGUAGUGUUUGUGAUAAGUCAU&AUUACUUAUUAU---UACUAUAUU	2	0.999791553335487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN2570_c0_g1_1581_TPlot.pdf
TRINITY_DN2570_c0_g1:1697	si_s437	TRINITY_DN2570_c0_g1	1686	1707	1697	-19.70	-13.40	0.680203045685279	6.5	1-3,1707-1705;5-9,1703-1699;10-21,1697-1686	4-4,1704-1704[SIL];x-x,1698-1698[BULt]	((((((((((((.(((((.(((&))).)))))-))))))))))))	UUGUGUGUAAUAUUGUAAAUGU&AUAAUUACA-UAUUAUAUAUAA	2	0.995434295473334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2570_c0_g1_1697_TPlot.pdf
TRINITY_DN2571_c0_g1:1489	si_s367	TRINITY_DN2571_c0_g1	1478	1497	1489	-39.40	-29.60	0.751269035532995	6	2-8,1496-1490;10-20,1489-1479	1-1,1497-1497[UP5];9-9,x-x[BULq];21-21,1478-1478[UP3]	.(((((((((((-(((((((.&.))))))).))))))))))).	GGCGCGGGCGGU-GGUUCAAA&AUUGAACCGAUCGCUCGCGUG	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN2571_c0_g1_1489_TPlot.pdf
TRINITY_DN2571_c0_g1:4580	si_a782	TRINITY_DN2571_c0_g1	4568	4589	4580	-26.40	-17.90	0.678030303030303	5.5	1-9,4589-4581;11-13,4579-4577;15-21,4574-4568	10-10,4580-4580[SIL];14-14,4576-4575[AILt]	(((((((..(((.(((((((((&))))))))).)))-.)))))))	AGUGGGACUAAUUGAAGAGUUG&CAACUCUUCUAUU-UUUCUAUU	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2571_c0_g1_4580_TPlot.pdf
TRINITY_DN2571_c0_g1:982	si_s166	TRINITY_DN2571_c0_g1	969	991	982	-42.40	-27.86	0.657075471698113	11	1-12,991-980;16-20,974-970	13-15,979-975[AILt];21-21,969-969[UP3]	.(((((.....((((((((((((&))))))))))))--...))))).	AGCAUCGCAAGGCCUUUGGCCAU&AUGGCCAGGGGU--AAAGAUGCC	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s166_TRINITY_DN2571_c0_g1_982_TPlot.pdf
TRINITY_DN2571_c0_g1:983	si_s165	TRINITY_DN2571_c0_g1	970	992	983	-41.70	-27.96	0.670503597122302	8.5	2-13,991-980;17-21,974-970	1-1,992-992[UP5];14-16,979-975[AILt]	(((((.....((((((((((((.&.))))))))))))--...)))))	GCAUCGCAAGGCCUUUGGCCAUC&CAUGGCCAGGGGU--AAAGAUGC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s165_TRINITY_DN2571_c0_g1_983_TPlot.pdf
TRINITY_DN25729_c0_g1:135	si_a494	TRINITY_DN25729_c0_g1	124	144	135	-29.50	-20.20	0.684745762711864	9.5	2-6,143-139;8-18,137-127	1-1,144-144[UP5];7-7,138-138[SIL];19-21,126-124[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	UGUGACGGAAGGCGUCGUAUG&AAUAUGUCGUUUUUCGUCUUC	4	0.999999807106365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN25729_c0_g1_135_TPlot.pdf
TRINITY_DN25729_c0_g1:136	si_a493	TRINITY_DN25729_c0_g1	125	145	136	-29.50	-20.20	0.684745762711864	10.5	3-7,143-139;9-19,137-127	1-2,145-144[UP5];8-8,138-138[SIL];20-21,126-125[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	GUGACGGAAGGCGUCGUAUGG&GAAUAUGUCGUUUUUCGUCUU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN25729_c0_g1_136_TPlot.pdf
TRINITY_DN2572_c0_g1:1605	si_s119	TRINITY_DN2572_c0_g1	1594	1622	1605	-27.40	-17.90	0.653284671532847	19.5	1-9,1622-1614;10-20,1605-1595	x-x,1613-1606[BULt];21-21,1594-1594[UP3]	.(((((((((((........(((((((((&)))))))))--------))))))))))).	CCAGCUCUUUUAGAAACACCUUUUUCUGU&AUAGAAAAA--------UAGAAGAGUUGA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN2572_c0_g1_1605_TPlot.pdf
TRINITY_DN2572_c0_g1:1614	si_s118	TRINITY_DN2572_c0_g1	1595	1623	1614	-26.40	-17.30	0.65530303030303	19	2-10,1622-1614;11-21,1605-1595	1-1,1623-1623[UP5];x-x,1613-1606[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	CAGCUCUUUUAGAAACACCUUUUUCUGUA&AAUAGAAAAA--------UAGAAGAGUUG	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN2572_c0_g1_1614_TPlot.pdf
TRINITY_DN2573_c0_g1:1494	si_a124	TRINITY_DN2573_c0_g1	1483	1503	1494	-25.10	-17.60	0.701195219123506	9.5	1-13,1503-1491;16-18,1488-1486	14-15,1490-1489[SIL];19-21,1485-1483[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	CAAGCUCCUGCUGUAGGACGA&UUGUUUUAUAGCAAUAGUAAU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN2573_c0_g1_1494_TPlot.pdf
TRINITY_DN2573_c0_g1:1495	si_a123	TRINITY_DN2573_c0_g1	1484	1504	1495	-26.60	-19.90	0.74812030075188	8.5	1-14,1504-1491;17-19,1488-1486	15-16,1490-1489[SIL];20-21,1485-1484[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	AAGCUCCUGCUGUAGGACGAG&CUUGUUUUAUAGCAAUAGUAA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN2573_c0_g1_1495_TPlot.pdf
TRINITY_DN2573_c0_g1:1520	si_s525	TRINITY_DN2573_c0_g1	1509	1529	1520	-24.00	-16.10	0.670833333333333	7.5	3-5,1527-1525;7-21,1523-1509	1-2,1529-1528[UP5];6-6,1524-1524[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AUCAGAAAUGAUUUUAGAUGG&UAAUUCGAAAUCAUUUUUGAU	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN2573_c0_g1_1520_TPlot.pdf
TRINITY_DN2573_c0_g1:436	si_s539	TRINITY_DN2573_c0_g1	424	445	436	-29.00	-19.80	0.682758620689655	5.5	1-9,445-437;11-18,435-428;19-21,426-424	10-10,436-436[SIL];x-x,427-427[BULt]	(((.((((((((.(((((((((&))))))))).))))))))-)))	UCUAAUUUUGAUGGGGUUAAAG&UUUUGAUCCGAUCAAAAU-AGA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s539_TRINITY_DN2573_c0_g1_436_TPlot.pdf
TRINITY_DN2573_c0_g1:437	si_s538	TRINITY_DN2573_c0_g1	426	446	437	-28.00	-18.20	0.65	8	2-10,445-437;12-19,435-428	1-1,446-446[UP5];11-11,436-436[SIL];20-21,427-426[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UAAUUUUGAUGGGGUUAAAGU&UUUUUGAUCCGAUCAAAAUAG	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN2573_c0_g1_437_TPlot.pdf
TRINITY_DN2573_c0_g1:438	si_s537	TRINITY_DN2573_c0_g1	427	447	438	-26.40	-18.20	0.689393939393939	9	3-11,445-437;13-20,435-428	1-2,447-446[UP5];12-12,436-436[SIL];21-21,427-427[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AAUUUUGAUGGGGUUAAAGUA&AUUUUUGAUCCGAUCAAAAUA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN2573_c0_g1_438_TPlot.pdf
TRINITY_DN2573_c0_g1:849	si_s617	TRINITY_DN2573_c0_g1	838	858	849	-28.30	-19.40	0.685512367491166	10.5	5-7,854-852;9-21,850-838	1-4,858-855[UP5];8-8,851-851[SIL]	(((((((((((((.(((....&....))).)))))))))))))	AGAAGAUCGCUUGAGUUAGGA&UUUAAAUCCAAGCGAUCUUUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN2573_c0_g1_849_TPlot.pdf
TRINITY_DN2573_c0_g1:850	si_s616	TRINITY_DN2573_c0_g1	839	859	850	-28.30	-18.70	0.660777385159011	8	1-4,859-856;6-8,854-852;10-21,850-839	5-5,855-855[SIL];9-9,851-851[SIL]	((((((((((((.(((.((((&)))).))).))))))))))))	GAAGAUCGCUUGAGUUAGGAG&UUUUAAAUCCAAGCGAUCUUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN2573_c0_g1_850_TPlot.pdf
TRINITY_DN2573_c0_g1:885	si_s554	TRINITY_DN2573_c0_g1	874	894	885	-25.90	-17.40	0.671814671814672	6.5	2-13,893-882;15-20,880-875	1-1,894-894[UP5];14-14,881-881[SIL];21-21,874-874[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	GCCGAAGCUGUUGAUUUUAUA&AAUAGAAUUAAUAUUUUCGGG	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN2573_c0_g1_885_TPlot.pdf
TRINITY_DN25753_c0_g1:70	si_s526	TRINITY_DN25753_c0_g1	57	79	70	-25.60	-20.30	0.79296875	6	3-13,77-67;14-21,64-57	1-2,79-78[UP5];x-x,66-65[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GGUCAAGAACAUGAUUUCGAAAG&AAUUCGAAAUCAU--UUUUGAUC	0	0.00697968649224379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN25753_c0_g1_70_TPlot.pdf
TRINITY_DN25767_c0_g1:765	si_a79	TRINITY_DN25767_c0_g1	754	774	765	-22.20	-17.00	0.765765765765766	8.5	4-19,771-756	1-3,774-772[UP5];20-21,755-754[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCUCUUGAUGAUGAAAAAAGU&UUGUUUUUCAUUAUUAAGAAA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN25767_c0_g1_765_TPlot.pdf
TRINITY_DN2576_c0_g1:913	si_s357	TRINITY_DN2576_c0_g1	902	922	913	-28.70	-21.30	0.742160278745645	3.5	1-15,922-908;17-19,906-904	16-16,907-907[SIL];20-21,903-902[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AGCGGCUUAAUCUAUUUCUUU&AAAGAAAUAGAUUGAACCGAU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN2576_c0_g1_913_TPlot.pdf
TRINITY_DN2576_c0_g1:915	si_s355	TRINITY_DN2576_c0_g1	904	924	915	-28.10	-22.40	0.797153024911032	2.5	2-17,923-908;19-21,906-904	1-1,924-924[UP5];18-18,907-907[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	CGGCUUAAUCUAUUUCUUUAA&AUAAAGAAAUAGAUUGAACCG	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s355_TRINITY_DN2576_c0_g1_915_TPlot.pdf
TRINITY_DN2576_c0_g1:916	si_s354	TRINITY_DN2576_c0_g1	905	925	916	-28.60	-20.00	0.699300699300699	4.5	3-18,923-908;20-21,906-905	1-2,925-924[UP5];19-19,907-907[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	GGCUUAAUCUAUUUCUUUAAU&GAUAAAGAAAUAGAUUGAACC	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s354_TRINITY_DN2576_c0_g1_916_TPlot.pdf
TRINITY_DN2577_c0_g1:1504	si_a232	TRINITY_DN2577_c0_g1	1494	1513	1504	-28.20	-19.60	0.695035460992908	4.5	1-9,1513-1505;11-15,1503-1499;17-21,1498-1494	10-10,1504-1504[SIL];16-16,x-x[BULq]	(((((-(((((.(((((((((&))))))))).))))).)))))	GAUCG-AUUGAAUAUGGAAAU&GUUUCUAUAAUCAAUUCGAUC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN2577_c0_g1_1504_TPlot.pdf
TRINITY_DN2578_c0_g1:814	si_s446	TRINITY_DN2578_c0_g1	802	823	814	-21.30	-15.10	0.708920187793427	6	2-12,822-812;13-19,810-804	1-1,823-823[UP5];x-x,811-811[BULt];20-21,803-802[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	GUAUUGUUGAUUAUAUAUGAUU&UAUUAUAUAUAA-CAACAAUUA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN2578_c0_g1_814_TPlot.pdf
TRINITY_DN25795_c0_g1:34	si_s93	TRINITY_DN25795_c0_g1	23	43	34	-34.80	-23.50	0.675287356321839	9	2-16,42-28	1-1,43-43[UP5];17-21,27-23[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACAAGGAAGUGGAGAAGGAGG&UCUUCUUCUUCGCUUCGGAUU	3	0.999999991331938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN25795_c0_g1_34_TPlot.pdf
TRINITY_DN25795_c0_g1:35	si_s92	TRINITY_DN25795_c0_g1	24	44	35	-34.90	-25.10	0.71919770773639	7.5	1-17,44-28	18-21,27-24[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAAGGAAGUGGAGAAGGAGGA&UUCUUCUUCUUCGCUUCGGAU	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN25795_c0_g1_35_TPlot.pdf
TRINITY_DN25795_c0_g1:37	si_s90	TRINITY_DN25795_c0_g1	26	46	37	-35.30	-25.90	0.73371104815864	7	2-19,45-28	1-1,46-46[UP5];20-21,27-26[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AGGAAGUGGAGAAGGAGGAGA&CUUUCUUCUUCUUCGCUUCGG	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN25795_c0_g1_37_TPlot.pdf
TRINITY_DN25795_c0_g1:38	si_s89	TRINITY_DN25795_c0_g1	27	49	38	-35.30	-27.50	0.779036827195468	8	1-3,49-47;4-20,44-28	x-x,46-45[BULt];21-21,27-27[UP3]	.(((((((((((((((((..(((&)))--))))))))))))))))).	GGAAGUGGAGAAGGAGGAGAAGG&CCU--UUCUUCUUCUUCGCUUCG	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN25795_c0_g1_38_TPlot.pdf
TRINITY_DN25795_c0_g1:39	si_s88	TRINITY_DN25795_c0_g1	28	50	39	-34.80	-28.50	0.818965517241379	7	1-4,50-47;5-21,44-28	x-x,46-45[BULt]	(((((((((((((((((..((((&))))--)))))))))))))))))	GAAGUGGAGAAGGAGGAGAAGGA&UCCU--UUCUUCUUCUUCGCUUC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN25795_c0_g1_39_TPlot.pdf
TRINITY_DN25795_c0_g1:40	si_s87	TRINITY_DN25795_c0_g1	29	51	40	-32.90	-25.70	0.781155015197568	7.5	1-5,51-47;6-21,44-29	x-x,46-45[BULt]	((((((((((((((((..(((((&)))))--))))))))))))))))	AAGUGGAGAAGGAGGAGAAGGAG&UUCCU--UUCUUCUUCUUCGCUU	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN25795_c0_g1_40_TPlot.pdf
TRINITY_DN25795_c0_g1:41	si_s86	TRINITY_DN25795_c0_g1	30	52	41	-32.90	-25.20	0.765957446808511	9	2-6,51-47;7-21,44-30	1-1,52-52[UP5];x-x,46-45[BULt]	(((((((((((((((..(((((.&.)))))--)))))))))))))))	AGUGGAGAAGGAGGAGAAGGAGG&UUUCCU--UUCUUCUUCUUCGCU	2	0.963508487859299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN25795_c0_g1_41_TPlot.pdf
TRINITY_DN2579_c0_g1:1322	si_s533	TRINITY_DN2579_c0_g1	1311	1333	1322	-28.80	-18.80	0.652777777777778	10	2-9,1332-1325;10-16,1322-1316;18-19,1314-1313	1-1,1333-1333[UP5];x-x,1324-1323[BULt];17-17,1315-1315[SIL];20-21,1312-1311[UP3]	..((.(((((((..((((((((.&.))))))))--))))))).))..	AGGAACGGAUCAAGGAAGUGAUG&AAUCAUUUU--UGAUCCGAUCAA	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN2579_c0_g1_1322_TPlot.pdf
TRINITY_DN257_c0_g1:151	si_a80	TRINITY_DN257_c0_g1	140	160	151	-22.10	-17.10	0.773755656108597	6.5	1-19,160-142	20-21,141-140[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAUUUUUAAUGAUGAGGAAUA&UGUUUUUCAUUAUUAAGAAAA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN257_c0_g1_151_TPlot.pdf
TRINITY_DN257_c0_g1:156	si_a75	TRINITY_DN257_c0_g1	145	165	156	-21.30	-15.10	0.708920187793427	10.5	5-21,161-145	1-4,165-162[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUAAUGAUGAGGAAUAAGUAU&CAAAUUGUUUUUCAUUAUUAA	4	0.999977754800744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN257_c0_g1_156_TPlot.pdf
TRINITY_DN257_c0_g1:27	si_a643	TRINITY_DN257_c0_g1	16	36	27	-28.30	-18.60	0.657243816254417	10	3-6,34-31;9-21,28-16	1-2,36-35[UP5];7-8,30-29[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	CCUGAUGUAUUAUGAGAAAUU&UUUUUUGAGUAAUAUAUCGGG	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN257_c0_g1_27_TPlot.pdf
TRINITY_DN257_c0_g1:4867	si_a75	TRINITY_DN257_c0_g1	4857	4876	4867	-21.30	-14.20	0.666666666666667	5	2-15,4875-4862;17-20,4861-4858	1-1,4876-4876[UP5];16-16,x-x[BULq];21-21,4857-4857[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AUGGU-AUGAAAAACAGUUUA&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN257_c0_g1_4867_TPlot.pdf
TRINITY_DN257_c1_g1:152	si_a351	TRINITY_DN257_c1_g1	141	161	152	-20.50	-13.60	0.663414634146341	9.5	4-18,158-144	1-3,161-159[UP5];19-21,143-141[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAAAAUGGAGUUAAUAAAU&AAAUAUUAAUUCUAUUUUGAU	4	0.999999348004209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN257_c1_g1_152_TPlot.pdf
TRINITY_DN2580_c0_g1:1889	si_s806	TRINITY_DN2580_c0_g1	1878	1898	1889	-28.60	-20.10	0.702797202797203	7	1-11,1898-1888;14-21,1885-1878	12-13,1887-1886[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AGGAGAAGAAGAUGAAGAUGA&UUAUCUUCGUUACCUUUUCUU	2	0.998582868378132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2580_c0_g1_1889_TPlot.pdf
TRINITY_DN2580_c0_g1:1891	si_s804	TRINITY_DN2580_c0_g1	1880	1900	1891	-27.90	-19.10	0.684587813620072	6	2-13,1899-1888;16-21,1885-1880	1-1,1900-1900[UP5];14-15,1887-1886[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GAGAAGAAGAUGAAGAUGAAC&UUUUAUCUUCGUUACCUUUUC	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN2580_c0_g1_1891_TPlot.pdf
TRINITY_DN25811_c0_g1:112	si_s758	TRINITY_DN25811_c0_g1	101	121	112	-23.50	-15.70	0.668085106382979	5	1-9,121-113;11-18,111-104	10-10,112-112[SIL];19-21,103-101[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUAUAAUCGUUUUUGUUUUAA&UUAAAACAACAACGAUUAAUU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN25811_c0_g1_112_TPlot.pdf
TRINITY_DN25811_c0_g1:138	si_s1	TRINITY_DN25811_c0_g1	127	148	138	-18.70	-14.10	0.754010695187166	8.5	1-7,148-142;8-19,140-129	x-x,141-141[BULt];20-21,128-127[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AUAUAAUGAGUGAUAGUGAAGA&UUUUUAU-AUUACUUAUUAUUA	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN25811_c0_g1_138_TPlot.pdf
TRINITY_DN25813_c0_g1:830	si_s66	TRINITY_DN25813_c0_g1	820	839	830	-26.30	-17.70	0.673003802281369	5.5	1-11,839-829;13-15,827-825;18-21,823-820	12-12,828-828[SIL];16-17,824-824[AILq]	((((.-(((.(((((((((((&))))))))))).)))..))))	AGGAU-GGACUAGAAGUUGCU&AGCAACUUCUAUUUUUUUUCU	4	0.99999993802016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN25813_c0_g1_830_TPlot.pdf
TRINITY_DN25813_c0_g1:835	si_s61	TRINITY_DN25813_c0_g1	824	844	835	-26.50	-17.30	0.652830188679245	12	5-16,840-829	1-4,844-841[UP5];17-21,828-824[UP3]	.....((((((((((((....&....)))))))))))).....	UGGACUAGAAGUUGCUAUGGU&AAGUUAGCAACUUCUAUUUUU	2	0.999565582530106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN25813_c0_g1_835_TPlot.pdf
TRINITY_DN2581_c0_g1:1413	si_s796	TRINITY_DN2581_c0_g1	1398	1422	1413	-30.30	-20.10	0.663366336633663	12	3-15,1420-1408;16-21,1403-1398	1-2,1422-1421[UP5];x-x,1407-1404[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	AGCGAGUCAUGAUGAAGUGCGGGGG&AGCUCGUAUUUUAUC----UUCGUU	4	0.999997655413421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2581_c0_g1_1413_TPlot.pdf
TRINITY_DN2581_c0_g1:1848	si_a631	TRINITY_DN2581_c0_g1	1837	1857	1848	-25.70	-16.90	0.657587548638132	7	1-4,1857-1854;6-19,1852-1839	5-5,1853-1853[SIL];20-21,1838-1837[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	UGCAGAAGAAUUGACAGAGUA&UAUUAUGUCGAUUUUUUUGAG	4	0.999999917251805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN2581_c0_g1_1848_TPlot.pdf
TRINITY_DN2581_c0_g1:3204	si_s696	TRINITY_DN2581_c0_g1	3196	3213	3204	-26.30	-17.20	0.653992395437262	8	3-12,3211-3202;16-21,3201-3196	1-2,3213-3212[UP5];13-15,x-x[BULq]	((((((---((((((((((..&..))))))))))...))))))	CGCUGA---AUCGACUGAUAA&UAAUUAGUCGAUUUAUUAGUG	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN2581_c0_g1_3204_TPlot.pdf
TRINITY_DN2581_c0_g1:3208	si_s692	TRINITY_DN2581_c0_g1	3197	3217	3208	-24.20	-19.90	0.822314049586777	6.5	1-5,3217-3213;7-19,3211-3199	6-6,3212-3212[SIL];20-21,3198-3197[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	GCUGAAUCGACUGAUAAAGCU&AGUUUAAUUAGUCGAUUUAUU	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN2581_c0_g1_3208_TPlot.pdf
TRINITY_DN2581_c0_g1:3210	si_s690	TRINITY_DN2581_c0_g1	3199	3219	3210	-26.70	-20.50	0.767790262172285	6.5	1-1,3219-3219;3-7,3217-3213;9-21,3211-3199	2-2,3218-3218[SIL];8-8,3212-3212[SIL]	(((((((((((((.(((((.(&).))))).)))))))))))))	UGAAUCGACUGAUAAAGCUGA&UGAGUUUAAUUAGUCGAUUUA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN2581_c0_g1_3210_TPlot.pdf
TRINITY_DN2581_c0_g1:3212	si_s688	TRINITY_DN2581_c0_g1	3201	3230	3212	-28.20	-18.78	0.665957446808511	21.5	1-9,3230-3222;11-21,3211-3201	10-10,3221-3212[AILt]	(((((((((((..........(((((((((&)))))))))---------.)))))))))))	AAUCGACUGAUAAAGCUGAAGAAGCUCAUG&CAUGAGUUU---------AAUUAGUCGAUU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN2581_c0_g1_3212_TPlot.pdf
TRINITY_DN2581_c0_g1:3634	si_s180	TRINITY_DN2581_c0_g1	3623	3645	3634	-35.30	-23.08	0.653824362606232	12.5	1-8,3645-3638;11-15,3633-3629;17-21,3627-3623	9-10,3637-3634[AILt];16-16,3628-3628[SIL]	(((((.(((((....((((((((&))))))))--..))))).)))))	GUGGUGGUUGCAGCAGGGCGUCU&AGAUGCCC--GAGUAACGAUUAU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s180_TRINITY_DN2581_c0_g1_3634_TPlot.pdf
TRINITY_DN2581_c0_g1:4021	si_a142	TRINITY_DN2581_c0_g1	4010	4030	4021	-23.50	-15.60	0.663829787234043	16.5	7-18,4024-4013	1-6,4030-4025[UP5];19-21,4012-4010[UP3]	...((((((((((((......&......))))))))))))...	CACGAGCAGCGACGAGCCAAC&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2581_c0_g1_4021_TPlot.pdf
TRINITY_DN2581_c0_g1:4022	si_a141	TRINITY_DN2581_c0_g1	4011	4031	4022	-23.80	-15.60	0.65546218487395	17.5	8-19,4024-4013	1-7,4031-4025[UP5];20-21,4012-4011[UP3]	..((((((((((((.......&.......))))))))))))..	ACGAGCAGCGACGAGCCAACG&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2581_c0_g1_4022_TPlot.pdf
TRINITY_DN2581_c0_g1:4507	si_s93	TRINITY_DN2581_c0_g1	4496	4518	4507	-34.80	-23.40	0.672413793103448	10	1-5,4518-4514;6-18,4511-4499	x-x,4513-4512[BULt];19-21,4498-4496[UP3]	...(((((((((((((..(((((&)))))--)))))))))))))...	ACACUGGAGCGAAGGGUCGAAGA&UCUUC--UUCUUCGCUUCGGAUU	3	0.999999999154983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2581_c0_g1_4507_TPlot.pdf
TRINITY_DN2581_c0_g1:4508	si_s92	TRINITY_DN2581_c0_g1	4497	4519	4508	-34.90	-23.80	0.681948424068768	9.5	1-6,4519-4514;7-19,4511-4499	x-x,4513-4512[BULt];20-21,4498-4497[UP3]	..(((((((((((((..((((((&))))))--)))))))))))))..	CACUGGAGCGAAGGGUCGAAGAG&UUCUUC--UUCUUCGCUUCGGAU	2	0.999991168177435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2581_c0_g1_4508_TPlot.pdf
TRINITY_DN2581_c0_g1:4704	si_a526	TRINITY_DN2581_c0_g1	4691	4713	4704	-45.60	-30.20	0.662280701754386	7	2-17,4712-4697;19-21,4693-4691	1-1,4713-4713[UP5];18-18,4696-4694[AILt]	(((...((((((((((((((((.&.))))))))))))))))--.)))	CGAGCGUGUUCGUGUGUUCGCCG&AGGCGGACACGCGAGCG--AUCG	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN2581_c0_g1_4704_TPlot.pdf
TRINITY_DN2581_c0_g1:4707	si_a523	TRINITY_DN2581_c0_g1	4696	4716	4707	-44.10	-29.20	0.662131519274376	10.5	5-20,4712-4697	1-4,4716-4713[UP5];21-21,4696-4696[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUGUUCGUGUGUUCGCCGGCC&GUAAGGCGGACACGCGAGCGA	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a523_TRINITY_DN2581_c0_g1_4707_TPlot.pdf
TRINITY_DN2581_c0_g1:7208	si_s810	TRINITY_DN2581_c0_g1	7195	7217	7208	-27.90	-18.40	0.659498207885305	9.5	1-12,7217-7206;14-17,7203-7200;18-21,7198-7195	13-13,7205-7204[AILt];x-x,7199-7199[BULt]	((((.((((..((((((((((((&))))))))))))-.))))-))))	UGUUGGAGGCCGAGGUGGCGGAG&CUUCGUUACCUU-UUCUU-AAUA	4	0.99999999842781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN2581_c0_g1_7208_TPlot.pdf
TRINITY_DN2581_c0_g1:7743	si_a78	TRINITY_DN2581_c0_g1	7732	7752	7743	-22.30	-15.80	0.708520179372197	8.5	1-16,7752-7737	17-21,7736-7732[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUAGGAAUGAUGAAAAGCGGU&AUUGUUUUUCAUUAUUAAGAA	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN2581_c0_g1_7743_TPlot.pdf
TRINITY_DN2581_c0_g1:7744	si_a77	TRINITY_DN2581_c0_g1	7733	7753	7744	-22.20	-16.00	0.720720720720721	8.5	2-17,7752-7737	1-1,7753-7753[UP5];18-21,7736-7733[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAGGAAUGAUGAAAAGCGGUA&AAUUGUUUUUCAUUAUUAAGA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN2581_c0_g1_7744_TPlot.pdf
TRINITY_DN2581_c0_g1:7747	si_a74	TRINITY_DN2581_c0_g1	7736	7756	7747	-22.20	-17.00	0.765765765765766	8.5	1-2,7756-7755;5-20,7752-7737	3-4,7754-7753[SIL];21-21,7736-7736[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	GAAUGAUGAAAAGCGGUAGGA&UCAAAUUGUUUUUCAUUAUUA	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN2581_c0_g1_7747_TPlot.pdf
TRINITY_DN25830_c0_g1:1748	si_s1	TRINITY_DN25830_c0_g1	1737	1757	1748	-18.70	-12.20	0.652406417112299	15	8-21,1750-1737	1-7,1757-1751[UP5]	((((((((((((((.......&.......))))))))))))))	UGAUGGUGAGUAAUUGUCAUA&UUUUUAUAUUACUUAUUAUUA	4	0.999999999999529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN25830_c0_g1_1748_TPlot.pdf
TRINITY_DN2583_c0_g1:133	si_a501	TRINITY_DN2583_c0_g1	122	142	133	-33.50	-22.30	0.665671641791045	8	2-13,141-130;15-20,128-123	1-1,142-142[UP5];14-14,129-129[SIL];21-21,122-122[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	AUCCAAGCAAGAUGGAGGGCU&CGUUUUUCGUCUUCCUUGGAA	4	0.999999999856589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2583_c0_g1_133_TPlot.pdf
TRINITY_DN2583_c0_g1:2707	si_s73	TRINITY_DN2583_c0_g1	2696	2716	2707	-24.00	-17.30	0.720833333333333	8	1-14,2716-2703;17-18,2700-2699	15-16,2702-2701[SIL];19-21,2698-2696[UP3]	...((..((((((((((((((&))))))))))))))..))...	AGCGGUCAGAGAAAAAGUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2583_c0_g1_2707_TPlot.pdf
TRINITY_DN2584_c0_g1:3468	si_a784	TRINITY_DN2584_c0_g1	3457	3477	3468	-24.70	-16.30	0.659919028340081	7.5	2-9,3476-3469;12-13,3466-3465;15-20,3463-3458	1-1,3477-3477[UP5];10-11,3468-3467[SIL];14-14,3464-3464[SIL];21-21,3457-3457[UP3]	.((((((.((..((((((((.&.))))))))..)).)))))).	UAGAUAGCAAUUUAGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999999726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2584_c0_g1_3468_TPlot.pdf
TRINITY_DN2584_c0_g1:4372	si_s427	TRINITY_DN2584_c0_g1	4359	4382	4372	-23.00	-15.90	0.691304347826087	7	1-7,4382-4376;8-13,4374-4369;14-21,4366-4359	x-x,4375-4375[BULt];x-x,4368-4367[BULt]	((((((((..((((((.(((((((&)))))))-))))))--))))))))	UGUGUAGUGGUAUUGUAUGUGUAG&CUAUAUA-ACAAUA--AUUACAUA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN2584_c0_g1_4372_TPlot.pdf
TRINITY_DN2584_c0_g2:1801	si_a784	TRINITY_DN2584_c0_g2	1790	1810	1801	-24.70	-16.30	0.659919028340081	7.5	2-9,1809-1802;12-13,1799-1798;15-20,1796-1791	1-1,1810-1810[UP5];10-11,1801-1800[SIL];14-14,1797-1797[SIL];21-21,1790-1790[UP3]	.((((((.((..((((((((.&.))))))))..)).)))))).	UAGAUAGCAAUUUAGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2584_c0_g2_1801_TPlot.pdf
TRINITY_DN2584_c0_g2:2783	si_s427	TRINITY_DN2584_c0_g2	2770	2793	2783	-23.00	-15.90	0.691304347826087	7	1-7,2793-2787;8-13,2785-2780;14-21,2777-2770	x-x,2786-2786[BULt];x-x,2779-2778[BULt]	((((((((..((((((.(((((((&)))))))-))))))--))))))))	UGUGUAGUGGUAUUGUAUGUGUAG&CUAUAUA-ACAAUA--AUUACAUA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN2584_c0_g2_2783_TPlot.pdf
TRINITY_DN2585_c0_g1:136	si_a377	TRINITY_DN2585_c0_g1	125	146	136	-24.50	-17.50	0.714285714285714	7.5	1-5,146-142;7-19,139-127	6-6,141-140[AILt];20-21,126-125[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	GAUGAUUCGGAAUCAGAUUUUG&CAAAA-AUGAUUUCGAAUUAAG	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a377_TRINITY_DN2585_c0_g1_136_TPlot.pdf
TRINITY_DN2586_c0_g1:1083	si_a784	TRINITY_DN2586_c0_g1	1066	1092	1083	-24.70	-17.40	0.704453441295547	16.5	1-10,1092-1083;11-20,1076-1067	x-x,1082-1077[BULt];21-21,1066-1066[UP3]	.((((((((((......((((((((((&))))))))))------)))))))))).	UGAAUAGGGAGUUGUUUAUGGAAGAGU&ACUCUUCUAU------UUUUCUAUUUU	2	0.999980412043275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2586_c0_g1_1083_TPlot.pdf
TRINITY_DN2586_c0_g1:1084	si_a783	TRINITY_DN2586_c0_g1	1067	1093	1084	-24.70	-18.60	0.753036437246964	15.5	1-11,1093-1083;12-21,1076-1067	x-x,1082-1077[BULt]	((((((((((......(((((((((((&)))))))))))------))))))))))	GAAUAGGGAGUUGUUUAUGGAAGAGUU&AACUCUUCUAU------UUUUCUAUUU	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2586_c0_g1_1084_TPlot.pdf
TRINITY_DN2586_c0_g1:1085	si_a782	TRINITY_DN2586_c0_g1	1068	1094	1085	-26.40	-17.50	0.662878787878788	15.5	2-12,1093-1083;13-21,1076-1068	1-1,1094-1094[UP5];x-x,1082-1077[BULt]	(((((((((......(((((((((((.&.)))))))))))------)))))))))	AAUAGGGAGUUGUUUAUGGAAGAGUUA&CAACUCUUCUAU------UUUUCUAUU	4	0.999999997197659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2586_c0_g1_1085_TPlot.pdf
TRINITY_DN25871_c0_g1:1742	si_a123	TRINITY_DN25871_c0_g1	1731	1751	1742	-26.60	-17.38	0.653383458646617	3.5	1-12,1751-1740;16-21,1736-1731	13-15,1739-1737[SIL]	((((((...((((((((((((&))))))))))))...))))))	UUACUGAAUCUAUAAAACAAG&CUUGUUUUAUAGCAAUAGUAA	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN25871_c0_g1_1742_TPlot.pdf
TRINITY_DN25871_c0_g1:494	si_a402	TRINITY_DN25871_c0_g1	483	504	494	-22.40	-17.00	0.758928571428572	6.5	1-5,504-500;6-18,498-486	x-x,499-499[BULt];19-21,485-483[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	CCAGUAGACAAAACAACUUCUG&UAGAA-UUGUUUUGUUUAUAUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN25871_c0_g1_494_TPlot.pdf
TRINITY_DN25871_c0_g1:495	si_a401	TRINITY_DN25871_c0_g1	484	505	495	-22.60	-18.60	0.823008849557522	6	1-6,505-500;7-19,498-486	x-x,499-499[BULt];20-21,485-484[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	CAGUAGACAAAACAACUUCUGU&AUAGAA-UUGUUUUGUUUAUAU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN25871_c0_g1_495_TPlot.pdf
TRINITY_DN25874_c0_g1:34	si_s39	TRINITY_DN25874_c0_g1	23	43	34	-22.30	-16.10	0.721973094170404	7.5	1-18,43-26	19-21,25-23[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUUUUCAAUUAUUGGGGGUUU&AAAUCUUUAAUAAUUGGAUUU	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN25874_c0_g1_34_TPlot.pdf
TRINITY_DN2587_c0_g1:1137	si_s802	TRINITY_DN2587_c0_g1	1125	1146	1137	-26.40	-18.60	0.704545454545455	10.5	4-12,1143-1135;13-19,1133-1127	1-3,1146-1144[UP5];x-x,1134-1134[BULt];20-21,1126-1125[UP3]	..(((((((.(((((((((...&...)))))))))-)))))))..	CUGGGUGGCAGAAGAUAAAGAU&UAUUUUAUCUUC-GUUACCUUU	3	0.999916707456954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN2587_c0_g1_1137_TPlot.pdf
TRINITY_DN2587_c0_g1:1139	si_s800	TRINITY_DN2587_c0_g1	1127	1151	1139	-29.70	-19.90	0.67003367003367	10.5	2-5,1150-1147;6-14,1143-1135;15-21,1133-1127	1-1,1151-1151[UP5];x-x,1146-1144[BULt];x-x,1134-1134[BULt]	(((((((.(((((((((...((((.&.))))---)))))))))-)))))))	GGGUGGCAGAAGAUAAAGAUGUACC&CGUAU---UUUAUCUUC-GUUACCU	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN2587_c0_g1_1139_TPlot.pdf
TRINITY_DN2587_c0_g1:2750	si_s683	TRINITY_DN2587_c0_g1	2736	2759	2750	-27.00	-18.70	0.692592592592593	8	1-10,2759-2750;11-20,2746-2737	x-x,2749-2747[BULt];21-21,2736-2736[UP3]	.((((((((((...((((((((((&))))))))))---)))))))))).	GUUAAUUAGACUUUUCAUGUUUCU&AGAAACAUGA---GUUUAAUUAGU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s683_TRINITY_DN2587_c0_g1_2750_TPlot.pdf
TRINITY_DN2587_c0_g1:2751	si_s682	TRINITY_DN2587_c0_g1	2737	2760	2751	-26.60	-18.70	0.703007518796992	8	2-11,2759-2750;12-21,2746-2737	1-1,2760-2760[UP5];x-x,2749-2747[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	UUAAUUAGACUUUUCAUGUUUCUU&UAGAAACAUGA---GUUUAAUUAG	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s682_TRINITY_DN2587_c0_g1_2751_TPlot.pdf
TRINITY_DN2587_c0_g1:2752	si_s681	TRINITY_DN2587_c0_g1	2738	2761	2752	-25.10	-18.20	0.725099601593625	9.5	3-12,2759-2750;13-21,2746-2738	1-2,2761-2760[UP5];x-x,2749-2747[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	UAAUUAGACUUUUCAUGUUUCUUG&AUAGAAACAUGA---GUUUAAUUA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN2587_c0_g1_2752_TPlot.pdf
TRINITY_DN2587_c0_g1:2753	si_s680	TRINITY_DN2587_c0_g1	2739	2762	2753	-25.10	-16.70	0.665338645418327	8.5	4-13,2759-2750;14-21,2746-2739	1-3,2762-2760[UP5];x-x,2749-2747[BULt]	((((((((...((((((((((...&...))))))))))---))))))))	AAUUAGACUUUUCAUGUUUCUUGU&UAUAGAAACAUGA---GUUUAAUU	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN2587_c0_g1_2753_TPlot.pdf
TRINITY_DN25907_c0_g1:1104	si_a701	TRINITY_DN25907_c0_g1	1093	1113	1104	-31.20	-20.40	0.653846153846154	9.5	3-16,1111-1098	1-2,1113-1112[UP5];17-21,1097-1093[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUACGGGGAUGUAUCAGUUUU&ACAACUGGUACAUUCCAAAAU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN25907_c0_g1_1104_TPlot.pdf
TRINITY_DN25907_c0_g1:1126	si_a634	TRINITY_DN25907_c0_g1	1115	1135	1126	-26.40	-17.60	0.666666666666667	8.5	2-7,1134-1129;9-19,1127-1117	1-1,1135-1135[UP5];8-8,1128-1128[SIL];20-21,1116-1115[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	UGGCUCAGGAAAAAUGACGUC&UAUGUCGAUUUUUUUGAGUAA	4	0.999999995586857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN25907_c0_g1_1126_TPlot.pdf
TRINITY_DN2590_c0_g1:2098	si_a123	TRINITY_DN2590_c0_g1	2086	2108	2098	-26.60	-17.50	0.657894736842105	6.5	1-6,2108-2103;7-16,2101-2092;17-20,2090-2087	x-x,2102-2102[BULt];x-x,2091-2091[BULt];21-21,2086-2086[UP3]	.((((.((((((((((.((((((&))))))-))))))))))-)))).	AUGCUAAUUGUUAUAAUAGCAAG&CUUGUU-UUAUAGCAAU-AGUAA	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN2590_c0_g1_2098_TPlot.pdf
TRINITY_DN2591_c0_g1:1477	si_a327	TRINITY_DN2591_c0_g1	1467	1486	1477	-28.40	-18.80	0.661971830985915	10.5	2-3,1485-1484;5-10,1482-1477;13-21,1475-1467	1-1,1486-1486[UP5];4-4,1483-1483[SIL];11-12,1476-1476[AILq]	(((((((((.-((((((.((.&.)).))))))..)))))))))	GGACGAGGAG-GAGAAGCUCC&UGAUUUUUUUAUUCCUUGUCC	4	0.999999996335082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2591_c0_g1_1477_TPlot.pdf
TRINITY_DN2591_c0_g1:2023	si_s84	TRINITY_DN2591_c0_g1	2012	2033	2023	-32.30	-21.60	0.668730650154799	9.5	1-8,2033-2026;10-14,2023-2019;16-20,2017-2013	9-9,2025-2024[AILt];15-15,2018-2018[SIL];21-21,2012-2012[UP3]	.(((((.(((((..((((((((&))))))))-.))))).))))).	UGAAGGCGAAGAUCGGGGGAGA&UCUUUCCU-UUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2591_c0_g1_2023_TPlot.pdf
TRINITY_DN2591_c0_g1:2024	si_s83	TRINITY_DN2591_c0_g1	2013	2034	2024	-30.90	-21.30	0.689320388349515	9	1-9,2034-2026;11-15,2023-2019;17-21,2017-2013	10-10,2025-2024[AILt];16-16,2018-2018[SIL]	(((((.(((((..(((((((((&)))))))))-.))))).)))))	GAAGGCGAAGAUCGGGGGAGAG&UUCUUUCCU-UUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2591_c0_g1_2024_TPlot.pdf
TRINITY_DN2591_c0_g1:2026	si_s89	TRINITY_DN2591_c0_g1	2012	2035	2026	-35.30	-25.40	0.719546742209632	10	1-10,2035-2026;11-17,2023-2017;18-20,2015-2013	x-x,2025-2024[BULt];x-x,2016-2016[BULt];21-21,2012-2012[UP3]	.(((.(((((((..((((((((((&))))))))))--)))))))-))).	UGAAGGCGAAGAUCGGGGGAGAGG&CCUUUCUUCU--UCUUCGC-UUCG	3	0.999969729732114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2591_c0_g1_2026_TPlot.pdf
TRINITY_DN2591_c0_g1:2029	si_s86	TRINITY_DN2591_c0_g1	2016	2038	2029	-32.90	-24.40	0.741641337386018	11	4-13,2035-2026;14-21,2023-2016	1-3,2038-2036[UP5];x-x,2025-2024[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	GGCGAAGAUCGGGGGAGAGGUUG&UUUCCUUUCUUCU--UCUUCGCU	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2591_c0_g1_2029_TPlot.pdf
TRINITY_DN2591_c0_g1:2030	si_s85	TRINITY_DN2591_c0_g1	2017	2039	2030	-33.80	-24.10	0.71301775147929	10.5	1-2,2039-2038;5-14,2035-2026;15-21,2023-2017	3-4,2037-2036[SIL];x-x,2025-2024[BULt]	(((((((..((((((((((..((&))..))))))))))--)))))))	GCGAAGAUCGGGGGAGAGGUUGG&CUUUCCUUUCUUCU--UCUUCGC	2	0.999786299500334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2591_c0_g1_2030_TPlot.pdf
TRINITY_DN2591_c0_g1:4448	si_s182	TRINITY_DN2591_c0_g1	4437	4456	4448	-32.60	-21.60	0.662576687116564	10.5	3-6,4454-4451;8-17,4450-4441	1-2,4456-4455[UP5];7-7,x-x[BULq];18-21,4440-4437[UP3]	....((((((((((-((((..&..)))).))))))))))....	GCCCGAUCGUUGCU-GGGCUC&AUGCCCGAGUAACGAUUAUUU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN2591_c0_g1_4448_TPlot.pdf
TRINITY_DN2591_c0_g1:4449	si_s181	TRINITY_DN2591_c0_g1	4438	4456	4449	-34.60	-22.50	0.65028901734104	8.5	1-2,4456-4455;4-7,4454-4451;9-18,4450-4441	3-3,x-x[BULq];8-8,x-x[BULq];19-21,4440-4438[UP3]	...((((((((((-((((-((&)).)))).))))))))))...	CCCGAUCGUUGCU-GGGC-UC&GAUGCCCGAGUAACGAUUAUU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN2591_c0_g1_4449_TPlot.pdf
TRINITY_DN2591_c0_g1:4965	si_a721	TRINITY_DN2591_c0_g1	4954	4974	4965	-35.10	-23.00	0.655270655270655	18	10-21,4965-4954	1-9,4974-4966[UP5]	((((((((((((.........&.........))))))))))))	GAGGUGCCCGAGGUGGUGCCG&UAAUCGUUACUCGGGCAUCUU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN2591_c0_g1_4965_TPlot.pdf
TRINITY_DN2592_c0_g1:1399	si_a401	TRINITY_DN2592_c0_g1	1388	1408	1399	-22.60	-16.10	0.712389380530973	9.5	4-19,1405-1390	1-3,1408-1406[UP5];20-21,1389-1388[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGAUAGAUGAAGCAAUUCAUC&AUAGAAUUGUUUUGUUUAUAU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2592_c0_g1_1399_TPlot.pdf
TRINITY_DN2592_c1_g1:1913	si_a406	TRINITY_DN2592_c1_g1	1900	1922	1913	-19.80	-13.10	0.661616161616162	10.5	1-11,1922-1912;12-19,1909-1902	x-x,1911-1910[BULt];20-21,1901-1900[UP3]	..((((((((..(((((((((((&)))))))))))--))))))))..	CAUAGAUAUGCUGAUAAAACAGU&AUUGUUUUGUU--UAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2592_c1_g1_1913_TPlot.pdf
TRINITY_DN2592_c1_g1:1914	si_a405	TRINITY_DN2592_c1_g1	1901	1923	1914	-19.80	-13.30	0.671717171717172	10	2-12,1922-1912;13-20,1909-1902	1-1,1923-1923[UP5];x-x,1911-1910[BULt];21-21,1901-1901[UP3]	.((((((((..(((((((((((.&.)))))))))))--)))))))).	AUAGAUAUGCUGAUAAAACAGUA&AAUUGUUUUGUU--UAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2592_c1_g1_1914_TPlot.pdf
TRINITY_DN2592_c1_g1:2001	si_a303	TRINITY_DN2592_c1_g1	1989	2010	2001	-28.40	-18.90	0.665492957746479	11.5	4-6,2007-2005;8-10,2003-2001;11-19,1999-1991	1-3,2010-2008[UP5];7-7,2004-2004[SIL];x-x,2000-2000[BULt];20-21,1990-1989[UP3]	..(((((((((.(((.(((...&...))).)))-)))))))))..	UGGAAUCCAAGCCGAUUCUGAU&AAAAGAUUCG-CUUGGAUUUAU	4	0.999969681393287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN2592_c1_g1_2001_TPlot.pdf
TRINITY_DN2592_c1_g1:2002	si_a302	TRINITY_DN2592_c1_g1	1990	2011	2002	-28.20	-18.90	0.670212765957447	12.5	5-7,2007-2005;9-11,2003-2001;12-20,1999-1991	1-4,2011-2008[UP5];8-8,2004-2004[SIL];x-x,2000-2000[BULt];21-21,1990-1990[UP3]	.(((((((((.(((.(((....&....))).)))-))))))))).	GGAAUCCAAGCCGAUUCUGAUC&AAAAAGAUUCG-CUUGGAUUUA	2	0.995709762510726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN2592_c1_g1_2002_TPlot.pdf
TRINITY_DN2592_c1_g1:729	si_a768	TRINITY_DN2592_c1_g1	719	738	729	-28.40	-19.30	0.679577464788732	6	1-15,738-724;18-21,722-719	16-17,723-723[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	AGGGG-GAAUCAGUUAAAGAU&GUUUUUGAUUGAUUCAACUCU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN2592_c1_g1_729_TPlot.pdf
TRINITY_DN2592_c1_g1:732	si_a765	TRINITY_DN2592_c1_g1	721	742	732	-30.50	-20.00	0.655737704918033	8	1-3,742-740;4-18,738-724;21-21,721-721	x-x,739-739[BULt];19-20,723-722[SIL]	(..(((((((((((((((.(((&)))-)))))))))))))))..)	GGGGAAUCAGUUAAAGAUACCA&UGG-GUUUUUGAUUGAUUCAAC	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN2592_c1_g1_732_TPlot.pdf
TRINITY_DN2592_c1_g1:733	si_a764	TRINITY_DN2592_c1_g1	722	743	733	-28.90	-18.90	0.653979238754325	8.5	2-4,742-740;5-19,738-724	1-1,743-743[UP5];x-x,739-739[BULt];20-21,723-722[UP3]	..(((((((((((((((.(((.&.)))-)))))))))))))))..	GGGAAUCAGUUAAAGAUACCAC&UUGG-GUUUUUGAUUGAUUCAA	4	0.99999999962935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2592_c1_g1_733_TPlot.pdf
TRINITY_DN25962_c0_g1:2110	si_a768	TRINITY_DN25962_c0_g1	2099	2119	2110	-28.40	-18.70	0.658450704225352	9.5	1-6,2119-2114;8-10,2112-2110;13-20,2107-2100	7-7,2113-2113[SIL];11-12,2109-2108[SIL];21-21,2099-2099[UP3]	.((((((((..(((.((((((&)))))).)))..)))))))).	UGAGUUGGAAGAAUGGAAAGC&GUUUUUGAUUGAUUCAACUCU	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN25962_c0_g1_2110_TPlot.pdf
TRINITY_DN25962_c0_g1:2343	si_s75	TRINITY_DN25962_c0_g1	2330	2352	2343	-24.00	-16.30	0.679166666666667	9	3-15,2350-2338;16-21,2335-2330	1-2,2352-2351[UP5];x-x,2337-2336[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AGAAAGUAGAAGGAGGAAAGAAA&UAUUUUUUUUCUUUC--CUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN25962_c0_g1_2343_TPlot.pdf
TRINITY_DN25962_c0_g1:2344	si_s81	TRINITY_DN25962_c0_g1	2334	2353	2344	-28.90	-19.70	0.681660899653979	4	2-12,2352-2342;14-18,2341-2337;20-21,2335-2334	1-1,2353-2353[UP5];13-13,x-x[BULq];19-19,2336-2336[SIL]	((.(((((-(((((((((((.&.))))))))))).))))).))	AGUAGAAG-GAGGAAAGAAAU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN25962_c0_g1_2344_TPlot.pdf
TRINITY_DN25962_c0_g1:2347	si_s73	TRINITY_DN25962_c0_g1	2338	2356	2347	-24.00	-16.90	0.704166666666667	5.5	2-13,2355-2344;16-21,2343-2338	1-1,2356-2356[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	GAAGGA--GGAAAGAAAUAGG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN25962_c0_g1_2347_TPlot.pdf
TRINITY_DN25962_c0_g1:2351	si_a549	TRINITY_DN25962_c0_g1	2341	2361	2351	-29.50	-19.50	0.661016949152542	4.5	2-6,2360-2356;7-15,2354-2346;17-21,2345-2341	1-1,2361-2361[UP5];x-x,2355-2355[BULt];16-16,x-x[BULq]	(((((-(((((((((.(((((.&.)))))-))))))))).)))))	GGAGG-AAAGAAAUAGGAUUGC&UCAAUC-UAUUUCUUUAUCUCC	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN25962_c0_g1_2351_TPlot.pdf
TRINITY_DN25962_c0_g1:2353	si_s67	TRINITY_DN25962_c0_g1	2342	2361	2353	-25.60	-19.60	0.765625	4.5	1-4,2361-2358;6-21,2357-2342	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	GAGGAAAGAAAUAGGA-UUGC&GCAACUUCUAUUUUUUUUCUU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN25962_c0_g1_2353_TPlot.pdf
TRINITY_DN25962_c0_g1:2354	si_s66	TRINITY_DN25962_c0_g1	2343	2362	2354	-26.30	-18.50	0.703422053231939	5	2-5,2361-2358;7-21,2357-2343	1-1,2362-2362[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AGGAAAGAAAUAGGA-UUGCC&AGCAACUUCUAUUUUUUUUCU	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN25962_c0_g1_2354_TPlot.pdf
TRINITY_DN25962_c0_g1:3496	si_a782	TRINITY_DN25962_c0_g1	3485	3509	3496	-26.40	-18.50	0.700757575757576	13.5	1-9,3509-3501;10-19,3496-3487	x-x,3500-3497[BULt];20-21,3486-3485[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	CCUGGAAAAAUGUAACGGGGAGUUG&CAACUCUUC----UAUUUUUCUAUU	3	0.999891632392592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN25962_c0_g1_3496_TPlot.pdf
TRINITY_DN25962_c0_g1:3511	si_a770	TRINITY_DN25962_c0_g1	3501	3519	3511	-28.70	-18.70	0.651567944250871	9	1-9,3519-3511;12-21,3510-3501	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GGGGAGUUGG--UAGUCGAAA&UUUUGAUUGAUUCAACUCUUC	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN25962_c0_g1_3511_TPlot.pdf
TRINITY_DN25962_c0_g1:3569	si_a434	TRINITY_DN25962_c0_g1	3558	3578	3569	-36.40	-26.80	0.736263736263736	7	1-15,3578-3564	16-21,3563-3558[UP3]	......(((((((((((((((&)))))))))))))))......	AGAGGUUAUCCAGCGGAUCCU&AGGAUCCGUUGGAUAUGAGAU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN25962_c0_g1_3569_TPlot.pdf
TRINITY_DN25962_c0_g1:3570	si_a433	TRINITY_DN25962_c0_g1	3559	3579	3570	-36.60	-27.60	0.754098360655738	6.5	1-16,3579-3564	17-21,3563-3559[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAGGUUAUCCAGCGGAUCCUG&UAGGAUCCGUUGGAUAUGAGA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a433_TRINITY_DN25962_c0_g1_3570_TPlot.pdf
TRINITY_DN25962_c0_g1:3573	si_a430	TRINITY_DN25962_c0_g1	3562	3582	3573	-33.70	-30.50	0.905044510385757	4.5	2-19,3581-3564	1-1,3582-3582[UP5];20-21,3563-3562[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GUUAUCCAGCGGAUCCUGUAG&AUAUAGGAUCCGUUGGAUAUG	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN25962_c0_g1_3573_TPlot.pdf
TRINITY_DN25962_c0_g1:3583	si_a420	TRINITY_DN25962_c0_g1	3572	3592	3583	-25.00	-17.50	0.7	10.5	2-5,3591-3588;7-9,3586-3584;12-21,3581-3572	1-1,3592-3592[UP5];6-6,3587-3587[SIL];10-11,3583-3582[SIL]	((((((((((..(((.((((.&.)))).)))..))))))))))	GGAUCCUGUAGCUGUAUGGAA&AUUUAAAUAAAUAUAGGAUCC	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN25962_c0_g1_3583_TPlot.pdf
TRINITY_DN25962_c0_g1:3631	si_s84	TRINITY_DN25962_c0_g1	3620	3644	3631	-32.30	-21.90	0.678018575851393	13.5	3-8,3642-3637;9-20,3632-3621	1-2,3644-3643[UP5];x-x,3636-3633[BULt];21-21,3620-3620[UP3]	.((((((((((((....((((((..&..))))))----)))))))))))).	GGAAGAGGAAGAAUCUCAGGAAGAU&UCUUUCCU----UUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN25962_c0_g1_3631_TPlot.pdf
TRINITY_DN25962_c0_g1:3632	si_s83	TRINITY_DN25962_c0_g1	3621	3645	3632	-30.90	-21.30	0.689320388349515	14.5	4-9,3642-3637;10-21,3632-3621	1-3,3645-3643[UP5];x-x,3636-3633[BULt]	((((((((((((....((((((...&...))))))----))))))))))))	GAAGAGGAAGAAUCUCAGGAAGAUC&UUCUUUCCU----UUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN25962_c0_g1_3632_TPlot.pdf
TRINITY_DN25962_c0_g1:4219	si_a314	TRINITY_DN25962_c0_g1	4208	4228	4219	-27.10	-18.40	0.678966789667897	5.5	1-11,4228-4218;14-21,4215-4208	12-13,4217-4216[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GAAGGUUAGAGAUAAAUCCAG&UUGGAUUUAUCCAUGAUUUUU	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN25962_c0_g1_4219_TPlot.pdf
TRINITY_DN25962_c0_g1:4295	si_s77	TRINITY_DN25962_c0_g1	4283	4304	4295	-25.50	-22.90	0.898039215686274	5.5	1-12,4304-4293;13-21,4291-4283	x-x,4292-4292[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	GAAGAAGGGAAGAGGAAGAAAA&UUUUUUUUCUUU-CCUUUCUUC	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN25962_c0_g1_4295_TPlot.pdf
TRINITY_DN25962_c0_g1:4304	si_s68	TRINITY_DN25962_c0_g1	4293	4313	4304	-23.10	-15.60	0.675324675324675	8.5	4-8,4310-4306;10-21,4304-4293	1-3,4313-4311[UP5];9-9,4305-4305[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGAGGAAGAAAAAAGAAGGGU&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN25962_c0_g1_4304_TPlot.pdf
TRINITY_DN25962_c0_g1:4333	si_s600	TRINITY_DN25962_c0_g1	4322	4344	4333	-28.20	-19.46	0.690070921985816	11	1-9,4344-4336;13-21,4330-4322	10-12,4335-4331[AILt]	(((((((((.....(((((((((&)))))))))--...)))))))))	UGAAGAAGAAAUGAGCUUGGAUU&AAUCCAAGC--GAAUCUUUUUUA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN25962_c0_g1_4333_TPlot.pdf
TRINITY_DN25962_c0_g1:4466	si_a494	TRINITY_DN25962_c0_g1	4455	4480	4466	-29.50	-19.30	0.654237288135593	18	5-8,4476-4473;9-21,4467-4455	1-4,4480-4477[UP5];x-x,4472-4468[BULt]	(((((((((((((.....((((....&....))))-----)))))))))))))	GAAGACGAAAAAUUCUCUGACAAAGA&AAUAUGUC-----GUUUUUCGUCUUC	4	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN25962_c0_g1_4466_TPlot.pdf
TRINITY_DN25962_c0_g1:4780	si_a763	TRINITY_DN25962_c0_g1	4769	4793	4780	-28.80	-19.20	0.666666666666667	10.5	1-9,4793-4785;10-18,4780-4772;20-20,4770-4770	x-x,4784-4781[BULt];19-19,4771-4771[SIL];21-21,4769-4769[UP3]	.(.(((((((((....(((((((((&)))))))))----))))))))).).	CGCAUCAGUCAAACCUAAACCCAAA&UUUGGGUUU----UUGAUUGAUUCA	3	0.999999990212477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN25962_c0_g1_4780_TPlot.pdf
TRINITY_DN25962_c0_g1:4853	si_a138	TRINITY_DN25962_c0_g1	4842	4863	4853	-26.30	-17.70	0.673003802281369	12.5	1-4,4863-4860;9-21,4854-4842	5-8,4859-4855[AILt]	(((((((((((((.....((((&))))-....)))))))))))))	GACGACGACGAUUCUUCCGCUA&UAGU-AAUUAAUCGUUGUUGUU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN25962_c0_g1_4853_TPlot.pdf
TRINITY_DN2596_c0_g1:1501	si_s78	TRINITY_DN2596_c0_g1	1489	1510	1501	-26.20	-19.20	0.732824427480916	7	1-12,1510-1499;13-19,1497-1491	x-x,1498-1498[BULt];20-21,1490-1489[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	CAAAGAAAGAGAAGGAGAAGAA&UUUUUUUCUUUC-CUUUCUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2596_c0_g1_1501_TPlot.pdf
TRINITY_DN2596_c0_g1:1625	si_a762	TRINITY_DN2596_c0_g1	1614	1634	1625	-29.70	-20.50	0.69023569023569	7	1-5,1634-1630;7-8,1628-1627;10-20,1625-1615	6-6,1629-1629[SIL];9-9,1626-1626[SIL];21-21,1614-1614[UP3]	.(((((((((((.((.(((((&))))).)).))))))))))).	CAAUCAAUCAAGCACGCAGAG&CUUUGGGUUUUUGAUUGAUUC	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2596_c0_g1_1625_TPlot.pdf
TRINITY_DN2596_c0_g1:1626	si_a761	TRINITY_DN2596_c0_g1	1615	1635	1626	-30.10	-23.80	0.790697674418605	6	1-6,1635-1630;8-9,1628-1627;11-21,1625-1615	7-7,1629-1629[SIL];10-10,1626-1626[SIL]	(((((((((((.((.((((((&)))))).)).)))))))))))	AAUCAAUCAAGCACGCAGAGG&CCUUUGGGUUUUUGAUUGAUU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN2596_c0_g1_1626_TPlot.pdf
TRINITY_DN2597_c0_g1:534	si_a333	TRINITY_DN2597_c0_g1	523	544	534	-30.60	-19.90	0.650326797385621	8.5	1-7,544-538;8-11,536-533;13-18,531-526	x-x,537-537[BULt];12-12,532-532[SIL];19-21,525-523[UP3]	...((((((.((((.(((((((&)))))))-)))).))))))...	AAAUUGGGAGAAGGAAAUAGAA&UUUUAUU-CCUUGUCCCGAAAA	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2597_c0_g1_534_TPlot.pdf
TRINITY_DN2597_c0_g1:535	si_a332	TRINITY_DN2597_c0_g1	524	545	535	-30.60	-20.10	0.656862745098039	7.5	2-8,544-538;9-12,536-533;14-19,531-526	1-1,545-545[UP5];x-x,537-537[BULt];13-13,532-532[SIL];20-21,525-524[UP3]	..((((((.((((.(((((((.&.)))))))-)))).))))))..	AAUUGGGAGAAGGAAAUAGAAG&UUUUUAUU-CCUUGUCCCGAAA	3	0.999997821875828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN2597_c0_g1_535_TPlot.pdf
TRINITY_DN2597_c0_g1:536	si_a331	TRINITY_DN2597_c0_g1	525	546	536	-30.60	-21.80	0.712418300653595	6.5	1-9,546-538;10-13,536-533;15-20,531-526	x-x,537-537[BULt];14-14,532-532[SIL];21-21,525-525[UP3]	.((((((.((((.(((((((((&)))))))))-)))).)))))).	AUUGGGAGAAGGAAAUAGAAGA&UUUUUUAUU-CCUUGUCCCGAA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2597_c0_g1_536_TPlot.pdf
TRINITY_DN2597_c0_g1:537	si_a550	TRINITY_DN2597_c0_g1	528	546	537	-30.90	-20.50	0.663430420711974	8	4-13,543-534;16-21,533-528	1-3,546-544[UP5];14-15,x-x[BULq]	((((((--((((((((((...&...))))))))))..))))))	GGGAGA--AGGAAAUAGAAGA&CAAUCUAUUUCUUUAUCUCCC	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN2597_c0_g1_537_TPlot.pdf
TRINITY_DN2597_c0_g1:538	si_a330	TRINITY_DN2597_c0_g1	526	547	538	-30.50	-22.50	0.737704918032787	5.5	1-10,547-538;11-14,536-533;16-21,531-526	x-x,537-537[BULt];15-15,532-532[SIL]	((((((.((((.((((((((((&))))))))))-)))).))))))	UUGGGAGAAGGAAAUAGAAGAA&UUUUUUUAUU-CCUUGUCCCGA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN2597_c0_g1_538_TPlot.pdf
TRINITY_DN2597_c0_g1:539	si_a329	TRINITY_DN2597_c0_g1	527	548	539	-29.60	-21.20	0.716216216216216	6.5	2-11,547-538;12-15,536-533;17-21,531-527	1-1,548-548[UP5];x-x,537-537[BULt];16-16,532-532[SIL]	(((((.((((.((((((((((.&.))))))))))-)))).)))))	UGGGAGAAGGAAAUAGAAGAAG&AUUUUUUUAUU-CCUUGUCCCG	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2597_c0_g1_539_TPlot.pdf
TRINITY_DN2597_c0_g1:540	si_a328	TRINITY_DN2597_c0_g1	528	549	540	-30.10	-20.50	0.681063122923588	8	3-12,547-538;13-16,536-533;18-21,531-528	1-2,549-548[UP5];x-x,537-537[BULt];17-17,532-532[SIL]	((((.((((.((((((((((..&..))))))))))-)))).))))	GGGAGAAGGAAAUAGAAGAAGA&GAUUUUUUUAUU-CCUUGUCCC	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN2597_c0_g1_540_TPlot.pdf
TRINITY_DN2597_c0_g1:541	si_s77	TRINITY_DN2597_c0_g1	529	550	541	-25.50	-17.50	0.686274509803922	7.5	1-10,550-541;11-16,538-533;18-21,532-529	x-x,540-539[BULt];17-17,x-x[BULq]	((((-((((((..((((((((((&))))))))))--)))))).))))	GGAG-AAGGAAAUAGAAGAAGAA&UUUUUUUUCU--UUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2597_c0_g1_541_TPlot.pdf
TRINITY_DN25981_c0_g3:2004	si_s313	TRINITY_DN25981_c0_g3	1993	2013	2004	-30.80	-24.20	0.785714285714286	8	3-17,2011-1997	1-2,2013-2012[UP5];18-21,1996-1993[UP3]	....(((((((((((((((..&..)))))))))))))))....	AGGUCAAGAAGGACAGAGUGG&AAAUUCUGUCCUUCUUGUUAC	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN25981_c0_g3_2004_TPlot.pdf
TRINITY_DN25981_c0_g3:2009	si_s308	TRINITY_DN25981_c0_g3	1998	2018	2009	-32.80	-23.56	0.718292682926829	10	2-3,2017-2016;8-21,2011-1998	1-1,2018-2018[UP5];4-7,2015-2012[SIL]	((((((((((((((....((.&.))....))))))))))))))	AAGAAGGACAGAGUGGAAGCC&UGCGAAAAUUCUGUCCUUCUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN25981_c0_g3_2009_TPlot.pdf
TRINITY_DN25981_c0_g3:2068	si_a777	TRINITY_DN25981_c0_g3	2057	2078	2068	-27.00	-17.90	0.662962962962963	9	2-5,2077-2074;8-21,2070-2057	1-1,2078-2078[UP5];6-7,2073-2071[AILt]	((((((((((((((...((((.&.))))-..))))))))))))))	GAAAAUGGAGGAGUACAAAUCG&UGAUU-CAACUCUUCUAUUUUU	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN25981_c0_g3_2068_TPlot.pdf
TRINITY_DN25981_c0_g3:2333	si_s94	TRINITY_DN25981_c0_g3	2316	2342	2333	-35.50	-27.80	0.783098591549296	8.5	1-10,2342-2333;11-13,2331-2329;14-21,2323-2316	x-x,2332-2332[BULt];x-x,2328-2324[BULt]	((((((((.....(((.((((((((((&))))))))))-)))-----))))))))	CAGUCCGACGAGAAGCAGAAGAAGGAG&CUUCUUCUUC-GCU-----UCGGAUUG	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN25981_c0_g3_2333_TPlot.pdf
TRINITY_DN25981_c0_g3:2334	si_s93	TRINITY_DN25981_c0_g3	2317	2343	2334	-34.80	-24.80	0.71264367816092	9.5	2-11,2342-2333;12-14,2331-2329;15-21,2323-2317	1-1,2343-2343[UP5];x-x,2332-2332[BULt];x-x,2328-2324[BULt]	(((((((.....(((.((((((((((.&.))))))))))-)))-----)))))))	AGUCCGACGAGAAGCAGAAGAAGGAGG&UCUUCUUCUUC-GCU-----UCGGAUU	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN25981_c0_g3_2334_TPlot.pdf
TRINITY_DN25981_c0_g3:2335	si_s92	TRINITY_DN25981_c0_g3	2318	2344	2335	-34.90	-25.70	0.736389684813754	9.5	1-12,2344-2333;13-15,2331-2329;16-21,2323-2318	x-x,2332-2332[BULt];x-x,2328-2324[BULt]	((((((.....(((.((((((((((((&))))))))))))-)))-----))))))	GUCCGACGAGAAGCAGAAGAAGGAGGA&UUCUUCUUCUUC-GCU-----UCGGAU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN25981_c0_g3_2335_TPlot.pdf
TRINITY_DN25981_c0_g3:2336	si_s91	TRINITY_DN25981_c0_g3	2319	2345	2336	-34.70	-25.30	0.729106628242075	8	1-13,2345-2333;14-16,2331-2329;17-21,2323-2319	x-x,2332-2332[BULt];x-x,2328-2324[BULt]	(((((.....(((.(((((((((((((&)))))))))))))-)))-----)))))	UCCGACGAGAAGCAGAAGAAGGAGGAA&UUUCUUCUUCUUC-GCU-----UCGGA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN25981_c0_g3_2336_TPlot.pdf
TRINITY_DN25981_c0_g3:2339	si_s88	TRINITY_DN25981_c0_g3	2327	2348	2339	-34.80	-24.20	0.695402298850575	8	4-16,2345-2333;17-21,2331-2327	1-3,2348-2346[UP5];x-x,2332-2332[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAAGCAGAAGAAGGAGGAAAAG&UCCUUUCUUCUUCUUC-GCUUC	3	0.999999992920476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN25981_c0_g3_2339_TPlot.pdf
TRINITY_DN25981_c0_g3:2342	si_s82	TRINITY_DN25981_c0_g3	2331	2351	2342	-28.90	-20.60	0.71280276816609	6	2-7,2350-2345;9-20,2343-2332	1-1,2351-2351[UP5];8-8,2344-2344[SIL];21-21,2331-2331[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	CAGAAGAAGGAGGAAAAGAAC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN25981_c0_g3_2342_TPlot.pdf
TRINITY_DN25981_c0_g3:2343	si_s81	TRINITY_DN25981_c0_g3	2332	2352	2343	-28.90	-20.60	0.71280276816609	6.5	3-8,2350-2345;10-21,2343-2332	1-2,2352-2351[UP5];9-9,2344-2344[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGAAGAAGGAGGAAAAGAACU&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN25981_c0_g3_2343_TPlot.pdf
TRINITY_DN25981_c0_g3:2344	si_s80	TRINITY_DN25981_c0_g3	2333	2353	2344	-28.20	-19.40	0.687943262411348	8.5	4-9,2350-2345;11-21,2343-2333	1-3,2353-2351[UP5];10-10,2344-2344[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAAGGAGGAAAAGAACUA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN25981_c0_g3_2344_TPlot.pdf
TRINITY_DN25981_c0_g3:2547	si_a556	TRINITY_DN25981_c0_g3	2536	2555	2547	-33.40	-22.40	0.67065868263473	7.5	1-5,2555-2551;9-16,2548-2541;18-21,2539-2536	6-8,2550-2549[AILq];17-17,2540-2540[SIL]	((((.((((((((..-(((((&)))))...)))))))).))))	UUCGGGGGGAGAUUC-GAAAU&AUUUCUUUAUCUCCCCGUGAA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN25981_c0_g3_2547_TPlot.pdf
TRINITY_DN2598_c0_g2:488	si_s490	TRINITY_DN2598_c0_g2	477	497	488	-17.80	-12.20	0.685393258426966	12	7-20,491-478	1-6,497-492[UP5];21-21,477-477[UP3]	.((((((((((((((......&......)))))))))))))).	AUUUGUUUAUAUUUACGGAAU&UUUAUUUAAAUAUAAACAAAA	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN2598_c0_g2_488_TPlot.pdf
TRINITY_DN2598_c0_g2:489	si_s489	TRINITY_DN2598_c0_g2	478	498	489	-17.90	-12.00	0.670391061452514	13	8-21,491-478	1-7,498-492[UP5]	((((((((((((((.......&.......))))))))))))))	UUUGUUUAUAUUUACGGAAUA&AUUUAUUUAAAUAUAAACAAA	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN2598_c0_g2_489_TPlot.pdf
TRINITY_DN2598_c1_g1:456	si_s72	TRINITY_DN2598_c1_g1	445	465	456	-24.10	-15.70	0.651452282157676	7	1-4,465-462;6-18,460-448	5-5,461-461[SIL];19-21,447-445[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	ACAGAAAGAGAAAAGAAAGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2598_c1_g1_456_TPlot.pdf
TRINITY_DN2598_c1_g1:459	si_s69	TRINITY_DN2598_c1_g1	448	468	459	-23.40	-15.80	0.675213675213675	8.5	4-7,465-462;9-21,460-448	1-3,468-466[UP5];8-8,461-461[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAGAAAAGAAAGAACGC&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2598_c1_g1_459_TPlot.pdf
TRINITY_DN25997_c0_g1:695	si_s488	TRINITY_DN25997_c0_g1	684	704	695	-18.30	-12.00	0.655737704918033	8	4-16,701-689;18-20,687-685	1-3,704-702[UP5];17-17,688-688[SIL];21-21,684-684[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	AUGUGUAUAUUUAAAUGAUAC&UAUUUAUUUAAAUAUAAACAA	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN25997_c0_g1_695_TPlot.pdf
TRINITY_DN25997_c0_g1:949	si_s76	TRINITY_DN25997_c0_g1	938	958	949	-23.60	-15.70	0.665254237288135	10.5	1-15,958-944	16-21,943-938[UP3]	......(((((((((((((((&)))))))))))))))......	CGACCUGGGGAGAAGAAGGAU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN25997_c0_g1_949_TPlot.pdf
TRINITY_DN25997_c0_g1:953	si_s72	TRINITY_DN25997_c0_g1	942	962	953	-24.10	-17.00	0.705394190871369	11	4-19,959-944	1-3,962-960[UP5];20-21,943-942[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUGGGGAGAAGAAGGAUAUUU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN25997_c0_g1_953_TPlot.pdf
TRINITY_DN25997_c0_g1:954	si_s71	TRINITY_DN25997_c0_g1	943	963	954	-25.70	-17.00	0.66147859922179	12	5-20,959-944	1-4,963-960[UP5];21-21,943-943[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGGGAGAAGAAGGAUAUUUC&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN25997_c0_g1_954_TPlot.pdf
TRINITY_DN25998_c0_g1:412	si_a136	TRINITY_DN25998_c0_g1	401	423	412	-25.70	-17.60	0.684824902723736	10	1-8,423-416;9-19,413-403;21-21,401-401	x-x,415-414[BULt];20-20,402-402[SIL]	(.(((((((((((..((((((((&))))))))--))))))))))).)	CUGCGACGAUUGGGCUUGCUGUU&AAUAGUAA--UUAAUCGUUGUUG	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN25998_c0_g1_412_TPlot.pdf
TRINITY_DN2599_c0_g1:2095	si_s74	TRINITY_DN2599_c0_g1	2084	2104	2095	-25.00	-16.90	0.676	11.5	6-20,2099-2085	1-5,2104-2100[UP5];21-21,2084-2084[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAGGAGAGAAAAGACGACG&CUAUUUUUUUUCUUUCCUUUC	2	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2599_c0_g1_2095_TPlot.pdf
TRINITY_DN2599_c0_g1:2097	si_s72	TRINITY_DN2599_c0_g1	2086	2107	2097	-24.10	-17.70	0.734439834024896	7.5	1-4,2107-2104;6-7,2102-2101;8-21,2099-2086	5-5,2103-2103[SIL];x-x,2100-2100[BULt]	((((((((((((((.((.((((&)))).))-))))))))))))))	AAGGAGAGAAAAGACGACGGAA&UUCUAUU-UUUUUUCUUUCCUU	2	0.999999531832773	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2599_c0_g1_2097_TPlot.pdf
TRINITY_DN2599_c0_g1:2382	si_a336	TRINITY_DN2599_c0_g1	2371	2393	2382	-31.20	-21.10	0.676282051282051	9	1-6,2393-2388;7-8,2385-2384;10-19,2382-2373	x-x,2387-2386[BULt];9-9,2383-2383[SIL];20-21,2372-2371[UP3]	..((((((((((.((..((((((&))))))--)).))))))))))..	CAAUUUUCGGGAGAGCUGGAAUA&UAUUCC--UUGUCCCGAAAAUAU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN2599_c0_g1_2382_TPlot.pdf
TRINITY_DN2599_c0_g1:2383	si_a335	TRINITY_DN2599_c0_g1	2372	2394	2383	-31.10	-21.30	0.684887459807074	9	2-7,2393-2388;8-9,2385-2384;11-20,2382-2373	1-1,2394-2394[UP5];x-x,2387-2386[BULt];10-10,2383-2383[SIL];21-21,2372-2372[UP3]	.((((((((((.((..((((((.&.))))))--)).)))))))))).	AAUUUUCGGGAGAGCUGGAAUAU&UUAUUCC--UUGUCCCGAAAAUA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN2599_c0_g1_2383_TPlot.pdf
TRINITY_DN2599_c0_g1:2384	si_a334	TRINITY_DN2599_c0_g1	2373	2395	2384	-30.70	-21.00	0.684039087947883	10	3-8,2393-2388;9-10,2385-2384;12-21,2382-2373	1-2,2395-2394[UP5];x-x,2387-2386[BULt];11-11,2383-2383[SIL]	((((((((((.((..((((((..&..))))))--)).))))))))))	AUUUUCGGGAGAGCUGGAAUAUG&UUUAUUCC--UUGUCCCGAAAAU	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN2599_c0_g1_2384_TPlot.pdf
TRINITY_DN2599_c0_g1:2410	si_s71	TRINITY_DN2599_c0_g1	2399	2419	2410	-25.70	-18.20	0.708171206225681	7.5	1-4,2419-2416;6-7,2414-2413;9-20,2411-2400	5-5,2415-2415[SIL];8-8,2412-2412[SIL];21-21,2399-2399[UP3]	.((((((((((((.((.((((&)))).)).)))))))))))).	CGGAAAGAGAAGAUAUUGAGG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2599_c0_g1_2410_TPlot.pdf
TRINITY_DN2599_c0_g1:2411	si_s70	TRINITY_DN2599_c0_g1	2400	2420	2411	-25.80	-19.70	0.763565891472868	6.5	1-5,2420-2416;7-8,2414-2413;10-21,2411-2400	6-6,2415-2415[SIL];9-9,2412-2412[SIL]	((((((((((((.((.(((((&))))).)).))))))))))))	GGAAAGAGAAGAUAUUGAGGU&ACUUCUAUUUUUUUUCUUUCC	2	0.978631982609921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2599_c0_g1_2411_TPlot.pdf
TRINITY_DN2599_c0_g1:2412	si_s69	TRINITY_DN2599_c0_g1	2401	2421	2412	-23.40	-16.50	0.705128205128205	7.5	2-6,2420-2416;8-9,2414-2413;11-21,2411-2401	1-1,2421-2421[UP5];7-7,2415-2415[SIL];10-10,2412-2412[SIL]	(((((((((((.((.(((((.&.))))).)).)))))))))))	GAAAGAGAAGAUAUUGAGGUA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999822642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2599_c0_g1_2412_TPlot.pdf
TRINITY_DN2599_c0_g1:4181	si_s18	TRINITY_DN2599_c0_g1	4170	4190	4181	-27.50	-18.40	0.669090909090909	9.5	3-17,4188-4174	1-2,4190-4189[UP5];18-21,4173-4170[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCCGGCAGUUAAUAUGGUAUG&AUUACUAUAUUGAUUGCAACU	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN2599_c0_g1_4181_TPlot.pdf
TRINITY_DN2599_c0_g1:4185	si_s14	TRINITY_DN2599_c0_g1	4174	4194	4185	-25.30	-18.00	0.711462450592885	13	7-21,4188-4174	1-6,4194-4189[UP5]	(((((((((((((((......&......)))))))))))))))	GCAGUUAAUAUGGUAUGGACA&UAUUAUUACUAUAUUGAUUGC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN2599_c0_g1_4185_TPlot.pdf
TRINITY_DN259_c0_g1:847	si_s687	TRINITY_DN259_c0_g1	836	856	847	-29.00	-21.10	0.727586206896552	6.5	1-3,856-854;5-20,852-837	4-4,853-853[SIL];21-21,836-836[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	CUUGGCUGAUUGAACUUUUGU&ACAUGAGUUUAAUUAGUCGAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s687_TRINITY_DN259_c0_g1_847_TPlot.pdf
TRINITY_DN259_c1_g2:2783	si_s429	TRINITY_DN259_c1_g2	2772	2792	2783	-21.10	-13.76	0.652132701421801	8	1-10,2792-2783;15-20,2778-2773	11-14,2782-2779[SIL];21-21,2772-2772[UP3]	.((((((....((((((((((&))))))))))....)))))).	UAUAUGUUAAGAUUGUUGUAU&AUAUAACAAUAAUUACAUAUU	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN259_c1_g2_2783_TPlot.pdf
TRINITY_DN25_c0_g1:5060	si_s899	TRINITY_DN25_c0_g1	5049	5076	5060	-28.30	-19.20	0.678445229681979	16	1-6,5076-5071;7-12,5063-5058;14-21,5056-5049	x-x,5070-5064[BULt];13-13,5057-5057[SIL]	((((((((.((((((.......((((((&))))))-------)))))).))))))))	AAUUGAAAAUGAAGAAGAAAUUGAGAGC&GCUUUC-------UCUUCAAUUUCAAUU	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN25_c0_g1_5060_TPlot.pdf
TRINITY_DN25_c0_g1:5066	si_a71	TRINITY_DN25_c0_g1	5055	5075	5066	-23.30	-16.20	0.695278969957081	6.5	1-7,5075-5069;9-10,5067-5066;12-20,5064-5056	8-8,5068-5068[SIL];11-11,5065-5065[SIL];21-21,5055-5055[UP3]	.(((((((((.((.(((((((&))))))).)).))))))))).	AAAUGAAGAAGAAAUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN25_c0_g1_5066_TPlot.pdf
TRINITY_DN25_c0_g1:5129	si_s87	TRINITY_DN25_c0_g1	5118	5142	5129	-32.90	-22.40	0.680851063829787	14	2-5,5141-5138;6-8,5133-5131;10-20,5129-5119	1-1,5142-5142[UP5];x-x,5137-5134[BULt];9-9,5130-5130[SIL];21-21,5118-5118[UP3]	.(((((((((((.(((....((((.&.))))----))).))))))))))).	CAGCGAAGAGGAUGAGCACCAGGAC&UUCCU----UUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN25_c0_g1_5129_TPlot.pdf
TRINITY_DN25_c0_g1:5476	si_a361	TRINITY_DN25_c0_g1	5465	5487	5476	-29.00	-19.30	0.66551724137931	11.5	1-6,5487-5482;7-17,5479-5469	x-x,5481-5480[BULt];18-21,5468-5465[UP3]	....(((((((((((..((((((&))))))--)))))))))))....	AAGAGAUCUGGUCAACAGAUGGA&UCUAUU--UUGAUCGGAUCAAAA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN25_c0_g1_5476_TPlot.pdf
TRINITY_DN25_c0_g2:1042	si_a181	TRINITY_DN25_c0_g2	1031	1055	1042	-32.00	-20.90	0.653125	13.5	1-8,1055-1048;9-11,1043-1041;13-21,1039-1031	x-x,1047-1044[BULt];12-12,1040-1040[SIL]	(((((((((.(((....((((((((&))))))))----))).)))))))))	CGGGGAAGGCUAUAAAGUGUCUGGG&UCUAGAUA----AUAUCUUUCCCUG	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN25_c0_g2_1042_TPlot.pdf
TRINITY_DN25_c0_g2:1048	si_a179	TRINITY_DN25_c0_g2	1032	1057	1048	-32.90	-21.80	0.662613981762918	14	2-10,1056-1048;11-13,1043-1041;14-21,1039-1032	1-1,1057-1057[UP5];x-x,1047-1044[BULt];x-x,1040-1040[BULt]	((((((((.(((....(((((((((.&.)))))))))----)))-))))))))	GGGGAAGGCUAUAAAGUGUCUGGGCA&CGUCUAGAUA----AUA-UCUUUCCC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN25_c0_g2_1048_TPlot.pdf
TRINITY_DN26009_c0_g2:544	si_a501	TRINITY_DN26009_c0_g2	532	554	544	-33.50	-22.10	0.659701492537313	6.5	1-9,554-546;10-13,544-541;15-20,538-533	x-x,545-545[BULt];14-14,540-539[AILt];21-21,532-532[UP3]	.((((((..((((.(((((((((&)))))))))-))))-.)))))).	CUCCAGGCAAAGAUCGAAAAGCG&CGUUUUUCG-UCUU-CCUUGGAA	4	0.999999999996916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN26009_c0_g2_544_TPlot.pdf
TRINITY_DN2601_c0_g3:1186	si_a635	TRINITY_DN2601_c0_g3	1175	1194	1186	-26.10	-18.00	0.689655172413793	7.5	1-8,1194-1187;11-19,1185-1177	9-10,1186-1186[AILq];20-21,1176-1175[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	AAUACUCAGAAU-AUUGACAU&AUGUCGAUUUUUUUGAGUAAU	4	0.99999750563007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2601_c0_g3_1186_TPlot.pdf
TRINITY_DN2601_c0_g3:1187	si_a633	TRINITY_DN2601_c0_g3	1177	1196	1187	-26.40	-19.50	0.738636363636364	6	1-10,1196-1187;13-21,1185-1177	11-12,1186-1186[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	UACUCAGAAU-AUUGACAUAG&UUAUGUCGAUUUUUUUGAGUA	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2601_c0_g3_1187_TPlot.pdf
TRINITY_DN2601_c0_g3:1188	si_a632	TRINITY_DN2601_c0_g3	1178	1197	1188	-26.10	-18.10	0.693486590038314	6.5	2-11,1196-1187;14-21,1185-1178	1-1,1197-1197[UP5];12-13,1186-1186[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	ACUCAGAAU-AUUGACAUAGC&AUUAUGUCGAUUUUUUUGAGU	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2601_c0_g3_1188_TPlot.pdf
TRINITY_DN2601_c0_g3:1189	si_a631	TRINITY_DN2601_c0_g3	1179	1198	1189	-25.70	-17.00	0.66147859922179	7.5	3-12,1196-1187;15-21,1185-1179	1-2,1198-1197[UP5];13-14,1186-1186[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	CUCAGAAU-AUUGACAUAGCA&UAUUAUGUCGAUUUUUUUGAG	2	0.999909460046264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN2601_c0_g3_1189_TPlot.pdf
TRINITY_DN2601_c0_g3:536	si_a111	TRINITY_DN2601_c0_g3	525	545	536	-26.20	-17.30	0.66030534351145	6.5	1-5,545-541;8-21,538-525	6-7,540-539[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UAAAAUAAGUUCGUCAUUUGU&AUAAAAUACGAGCUUGUUUUA	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN2601_c0_g3_536_TPlot.pdf
TRINITY_DN26023_c0_g1:909	si_s771	TRINITY_DN26023_c0_g1	898	917	909	-25.20	-18.60	0.738095238095238	5.5	1-5,917-913;7-19,912-900	6-6,x-x[BULq];20-21,899-898[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	CAAUAGUAAUAGUAA-UAGUC&GAUUAAUUACUAUUGCUAUAA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN26023_c0_g1_909_TPlot.pdf
TRINITY_DN26023_c0_g1:910	si_s770	TRINITY_DN26023_c0_g1	899	918	910	-26.60	-20.70	0.778195488721804	4.5	1-6,918-913;8-20,912-900	7-7,x-x[BULq];21-21,899-899[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AAUAGUAAUAGUAA-UAGUCG&CGAUUAAUUACUAUUGCUAUA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN26023_c0_g1_910_TPlot.pdf
TRINITY_DN26023_c0_g1:911	si_s769	TRINITY_DN26023_c0_g1	900	919	911	-27.00	-20.40	0.755555555555556	4.5	2-7,918-913;9-21,912-900	1-1,919-919[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	AUAGUAAUAGUAA-UAGUCGA&ACGAUUAAUUACUAUUGCUAU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN26023_c0_g1_911_TPlot.pdf
TRINITY_DN26023_c0_g1:912	si_s768	TRINITY_DN26023_c0_g1	901	920	912	-26.80	-19.20	0.716417910447761	6.5	3-8,918-913;10-21,912-901	1-2,920-919[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	UAGUAAUAGUAA-UAGUCGAC&AACGAUUAAUUACUAUUGCUA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN26023_c0_g1_912_TPlot.pdf
TRINITY_DN2602_c0_g1:3884	si_s529	TRINITY_DN2602_c0_g1	3872	3893	3884	-30.30	-20.50	0.676567656765677	7	1-5,3893-3889;8-18,3886-3876;19-21,3874-3872	6-7,3888-3887[SIL];x-x,3875-3875[BULt]	(((.(((((((((((..(((((&)))))..)))))))))))-)))	UCGUGAUCAAAAGUGUCUUUGA&UCGAAAUCAUUUUUGAUC-CGA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN2602_c0_g1_3884_TPlot.pdf
TRINITY_DN26034_c0_g1:14	si_a812	TRINITY_DN26034_c0_g1	3	26	14	-34.80	-23.30	0.669540229885058	8.5	1-5,26-22;6-15,18-9;18-21,6-3	x-x,21-19[BULt];16-17,8-7[SIL]	((((..((((((((((...(((((&)))))---))))))))))..))))	UCUUAGCUUCUUCUUCUUAGCUUC&GAAGC---GAAGAAGAAGAAAGGA	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN26034_c0_g1_14_TPlot.pdf
TRINITY_DN26037_c0_g1:43	si_s75	TRINITY_DN26037_c0_g1	29	52	43	-24.00	-16.00	0.666666666666667	10.5	3-14,50-39;15-21,35-29	1-2,52-51[UP5];x-x,38-36[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	AGGAAGGCCUGGAGAGAAAGGACA&UAUUUUUUUUCUUU---CCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN26037_c0_g1_43_TPlot.pdf
TRINITY_DN2605_c0_g1:2716	si_s774	TRINITY_DN2605_c0_g1	2701	2725	2716	-24.70	-16.60	0.672064777327935	11	1-10,2725-2716;11-13,2711-2709;15-21,2707-2701	x-x,2715-2712[BULt];14-14,2708-2708[SIL]	(((((((.(((....((((((((((&))))))))))----))).)))))))	GUUUUAUUGCAUAAUGUAGUGAUUA&UAAUUACUAU----UGCUAUAAAAC	2	0.941441084787653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN2605_c0_g1_2716_TPlot.pdf
TRINITY_DN26068_c2_g1:104	si_a460	TRINITY_DN26068_c2_g1	93	113	104	-21.60	-14.30	0.662037037037037	6	1-12,113-102;15-18,99-96	13-14,101-100[SIL];19-21,95-93[UP3]	...((((..((((((((((((&))))))))))))..))))...	GGGACAUCAUGUAUAUAACAA&UUGUUAUAUAUAAUAUGUAAU	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN26068_c2_g1_104_TPlot.pdf
TRINITY_DN26068_c2_g1:112	si_a452	TRINITY_DN26068_c2_g1	101	121	112	-23.00	-15.20	0.660869565217391	5.5	2-7,120-115;9-20,113-102	1-1,121-121[UP5];8-8,114-114[SIL];21-21,101-101[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AUGUAUAUAACAAAGAUUAUA&GAUAAUUGUUGUUAUAUAUAA	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN26068_c2_g1_112_TPlot.pdf
TRINITY_DN2606_c0_g1:1961	si_a416	TRINITY_DN2606_c0_g1	1949	1970	1961	-20.50	-14.00	0.682926829268293	4.5	1-12,1970-1959;14-21,1956-1949	13-13,1958-1957[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	CUUAUAUUAAGUUUAAAUAUAA&UUAUAUUUAAAU-AAAUAUAGG	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN2606_c0_g1_1961_TPlot.pdf
TRINITY_DN26072_c1_g1:146	si_s768	TRINITY_DN26072_c1_g1	136	155	146	-26.80	-19.20	0.716417910447761	6	2-14,154-142;16-20,141-137	1-1,155-155[UP5];15-15,x-x[BULq];21-21,136-136[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	CAGCAA-AGUGAUUGAUUGUA&AACGAUUAAUUACUAUUGCUA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN26072_c1_g1_146_TPlot.pdf
TRINITY_DN26072_c1_g1:157	si_a874	TRINITY_DN26072_c1_g1	146	166	157	-26.70	-18.80	0.704119850187266	9.5	6-21,161-146	1-5,166-162[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUGAUUGUAACUAAAAAAAA&AAAGAUUUAGUUGCAAUCAAU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN26072_c1_g1_157_TPlot.pdf
TRINITY_DN2607_c1_g1:1069	si_a147	TRINITY_DN2607_c1_g1	1058	1078	1069	-30.40	-20.60	0.677631578947368	9.5	3-18,1076-1061	1-2,1078-1077[UP5];19-21,1060-1058[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCUCUUGGAACAGCGACGGA&AUCGUUGUUGUUUUAAGGUCA	3	0.999913265931978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN2607_c1_g1_1069_TPlot.pdf
TRINITY_DN2607_c1_g1:1070	si_a146	TRINITY_DN2607_c1_g1	1059	1079	1070	-29.70	-20.60	0.693602693602694	10.5	4-19,1076-1061	1-3,1079-1077[UP5];20-21,1060-1059[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCUCUUGGAACAGCGACGGAA&AAUCGUUGUUGUUUUAAGGUC	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN2607_c1_g1_1070_TPlot.pdf
TRINITY_DN2607_c1_g1:1071	si_a145	TRINITY_DN2607_c1_g1	1060	1080	1071	-28.10	-20.60	0.733096085409253	11.5	5-20,1076-1061	1-4,1080-1077[UP5];21-21,1060-1060[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUCUUGGAACAGCGACGGAAG&UAAUCGUUGUUGUUUUAAGGU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN2607_c1_g1_1071_TPlot.pdf
TRINITY_DN2607_c1_g1:1072	si_a144	TRINITY_DN2607_c1_g1	1061	1081	1072	-27.40	-20.50	0.748175182481752	12.5	6-21,1076-1061	1-5,1081-1077[UP5]	((((((((((((((((.....&.....))))))))))))))))	UCUUGGAACAGCGACGGAAGA&UUAAUCGUUGUUGUUUUAAGG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN2607_c1_g1_1072_TPlot.pdf
TRINITY_DN2607_c1_g1:1074	si_a142	TRINITY_DN2607_c1_g1	1063	1083	1074	-23.50	-16.90	0.719148936170213	15.5	8-21,1076-1063	1-7,1083-1077[UP5]	((((((((((((((.......&.......))))))))))))))	UUGGAACAGCGACGGAAGACC&AAUUAAUCGUUGUUGUUUUAA	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2607_c1_g1_1074_TPlot.pdf
TRINITY_DN26087_c1_g1:3269	si_a70	TRINITY_DN26087_c1_g1	3258	3278	3269	-23.90	-17.60	0.736401673640168	6	1-11,3278-3268;13-14,3266-3265;16-20,3263-3259	12-12,3267-3267[SIL];15-15,3264-3264[SIL];21-21,3258-3258[UP3]	.(((((.((.(((((((((((&))))))))))).)).))))).	UGUGGAUAAGGAUUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN26087_c1_g1_3269_TPlot.pdf
TRINITY_DN2608_c0_g1:339	si_s666	TRINITY_DN2608_c0_g1	328	351	339	-31.30	-20.82	0.66517571884984	14.5	1-7,351-345;10-19,339-330	8-9,344-340[AILt];20-21,329-328[UP3]	..((((((((((.....(((((((&)))))))---..))))))))))..	CGCUGUGGUCAAGGACAUGAUCCC&GGGAUCG---AAUUGAUUAUAGAA	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN2608_c0_g1_339_TPlot.pdf
TRINITY_DN2608_c0_g1:789	si_a409	TRINITY_DN2608_c0_g1	778	798	789	-19.50	-12.80	0.656410256410256	10.5	1-8,798-791;10-16,789-783	9-9,790-790[SIL];17-21,782-778[UP3]	.....(((((((.((((((((&)))))))).))))))).....	UCCGCUGAAUAUUGACGAAGC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2608_c0_g1_789_TPlot.pdf
TRINITY_DN2609_c0_g1:1607	si_s47	TRINITY_DN2609_c0_g1	1596	1616	1607	-26.30	-17.10	0.650190114068441	10	5-18,1612-1599;20-21,1597-1596	1-4,1616-1613[UP5];19-19,1598-1598[SIL]	((.((((((((((((((....&....)))))))))))))).))	CUUACUUGAGAUUCAAUAGAC&AAUAAUUGGAUUUCAAGUUAG	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN2609_c0_g1_1607_TPlot.pdf
TRINITY_DN2609_c0_g1:1677	si_a123	TRINITY_DN2609_c0_g1	1666	1690	1677	-26.60	-17.90	0.672932330827068	14.5	1-6,1690-1685;7-14,1680-1673;16-20,1671-1667	x-x,1684-1681[BULt];15-15,1672-1672[SIL];21-21,1666-1666[UP3]	.(((((.((((((((....((((((&))))))----)))))))).))))).	CUGCUACUGCUGUGAGUAUGACGAG&CUUGUU----UUAUAGCAAUAGUAA	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN2609_c0_g1_1677_TPlot.pdf
TRINITY_DN2609_c0_g1:1679	si_a121	TRINITY_DN2609_c0_g1	1668	1692	1679	-29.30	-20.80	0.709897610921502	14.5	2-8,1691-1685;9-16,1680-1673;18-21,1671-1668	1-1,1692-1692[UP5];x-x,1684-1681[BULt];17-17,1672-1672[SIL]	((((.((((((((....(((((((.&.)))))))----)))))))).))))	GCUACUGCUGUGAGUAUGACGAGCA&AGCUUGUU----UUAUAGCAAUAGU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN2609_c0_g1_1679_TPlot.pdf
TRINITY_DN2609_c0_g1:1951	si_s656	TRINITY_DN2609_c0_g1	1940	1960	1951	-35.20	-23.00	0.653409090909091	8.5	1-5,1960-1956;7-16,1954-1945;18-18,1943-1943	6-6,1955-1955[SIL];17-17,1944-1944[SIL];19-21,1942-1940[UP3]	...(.((((((((((.(((((&))))).)))))))))).)...	CUAUGGGUCCCUCGACUGUGU&AUACAAUCGGGGGAUCGAAUU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s656_TRINITY_DN2609_c0_g1_1951_TPlot.pdf
TRINITY_DN2609_c0_g1:1955	si_s652	TRINITY_DN2609_c0_g1	1944	1963	1955	-40.20	-26.80	0.666666666666667	7	1-3,1963-1961;5-9,1960-1956;11-20,1954-1945	4-4,x-x[BULq];10-10,1955-1955[SIL];21-21,1944-1944[UP3]	.((((((((((.(((((-(((&))).))))).)))))))))).	GGGUCCCUCGACUGUGU-GAG&CUCGAUACAAUCGGGGGAUCG	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s652_TRINITY_DN2609_c0_g1_1955_TPlot.pdf
TRINITY_DN2609_c0_g1:1956	si_s651	TRINITY_DN2609_c0_g1	1945	1964	1956	-41.10	-29.50	0.717761557177616	6	1-4,1964-1961;6-10,1960-1956;12-21,1954-1945	5-5,x-x[BULq];11-11,1955-1955[SIL]	((((((((((.(((((-((((&)))).))))).))))))))))	GGUCCCUCGACUGUGU-GAGG&CCUCGAUACAAUCGGGGGAUC	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s651_TRINITY_DN2609_c0_g1_1956_TPlot.pdf
TRINITY_DN2609_c0_g1:1957	si_s650	TRINITY_DN2609_c0_g1	1946	1965	1957	-41.50	-29.80	0.718072289156627	6	1-5,1965-1961;7-11,1960-1956;13-21,1954-1946	6-6,x-x[BULq];12-12,1955-1955[SIL]	(((((((((.(((((-(((((&))))).))))).)))))))))	GUCCCUCGACUGUGU-GAGGG&CCCUCGAUACAAUCGGGGGAU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s650_TRINITY_DN2609_c0_g1_1957_TPlot.pdf
TRINITY_DN2609_c0_g1:1958	si_s649	TRINITY_DN2609_c0_g1	1947	1966	1958	-43.80	-30.40	0.694063926940639	5	1-6,1966-1961;8-12,1960-1956;14-21,1954-1947	7-7,x-x[BULq];13-13,1955-1955[SIL]	((((((((.(((((-((((((&)))))).))))).))))))))	UCCCUCGACUGUGU-GAGGGU&GCCCUCGAUACAAUCGGGGGA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN2609_c0_g1_1958_TPlot.pdf
TRINITY_DN2609_c0_g1:2052	si_a260	TRINITY_DN2609_c0_g1	2040	2061	2052	-39.50	-25.80	0.653164556962025	10	2-2,2060-2060;5-13,2057-2049;16-19,2045-2042	1-1,2061-2061[UP5];3-4,2059-2058[SIL];14-15,2048-2046[AILt];20-21,2041-2040[UP3]	..((((...(((((((((..(.&.)..)))))))))-..))))..	UCGGCGCUCUGCCCUCGAGUCU&UGUAUCGAGGGCA-AACGCCUA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a260_TRINITY_DN2609_c0_g1_2052_TPlot.pdf
TRINITY_DN2609_c0_g1:2053	si_a259	TRINITY_DN2609_c0_g1	2041	2062	2053	-39.20	-25.80	0.658163265306122	11	3-3,2060-2060;6-14,2057-2049;17-20,2045-2042	1-2,2062-2061[UP5];4-5,2059-2058[SIL];15-16,2048-2046[AILt];21-21,2041-2041[UP3]	.((((...(((((((((..(..&..)..)))))))))-..)))).	CGGCGCUCUGCCCUCGAGUCUG&UUGUAUCGAGGGCA-AACGCCU	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN2609_c0_g1_2053_TPlot.pdf
TRINITY_DN2609_c0_g1:2054	si_a258	TRINITY_DN2609_c0_g1	2042	2063	2054	-38.60	-25.50	0.660621761658031	12	4-4,2060-2060;7-15,2057-2049;18-21,2045-2042	1-3,2063-2061[UP5];5-6,2059-2058[SIL];16-17,2048-2046[AILt]	((((...(((((((((..(...&...)..)))))))))-..))))	GGCGCUCUGCCCUCGAGUCUGU&AUUGUAUCGAGGGCA-AACGCC	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN2609_c0_g1_2054_TPlot.pdf
TRINITY_DN2609_c0_g1:2055	si_a257	TRINITY_DN2609_c0_g1	2043	2064	2055	-38.20	-25.00	0.654450261780105	10	1-3,2064-2062;5-5,2060-2060;8-16,2057-2049;19-21,2045-2043	4-4,2061-2061[SIL];6-7,2059-2058[SIL];17-18,2048-2046[AILt]	(((...(((((((((..(.(((&))).)..)))))))))-..)))	GCGCUCUGCCCUCGAGUCUGUC&GAUUGUAUCGAGGGCA-AACGC	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a257_TRINITY_DN2609_c0_g1_2055_TPlot.pdf
TRINITY_DN2609_c0_g1:4194	si_s206	TRINITY_DN2609_c0_g1	4183	4203	4194	-33.00	-23.90	0.724242424242424	6.5	1-15,4203-4189;17-19,4187-4185	16-16,4188-4188[SIL];20-21,4184-4183[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UCCGAUCAUAAUUGGUGCGUU&AAUGUACCAGUUGUGUUCGAA	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN2609_c0_g1_4194_TPlot.pdf
TRINITY_DN2609_c0_g1:4195	si_s205	TRINITY_DN2609_c0_g1	4184	4204	4195	-34.90	-24.20	0.693409742120344	6.5	2-16,4203-4189;18-20,4187-4185	1-1,4204-4204[UP5];17-17,4188-4188[SIL];21-21,4184-4184[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	CCGAUCAUAAUUGGUGCGUUA&GAAUGUACCAGUUGUGUUCGA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN2609_c0_g1_4195_TPlot.pdf
TRINITY_DN2609_c0_g1:4368	si_a140	TRINITY_DN2609_c0_g1	4357	4382	4368	-25.20	-17.88	0.70952380952381	18	1-4,4382-4379;8-21,4370-4357	5-7,4378-4371[AILt]	((((((((((((((........((((&))))-----...))))))))))))))	GAAACGACAACGAUGGGAAGCUUUGC&GUAA-----UUAAUCGUUGUUGUUUU	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN2609_c0_g1_4368_TPlot.pdf
TRINITY_DN2609_c0_g1:584	si_s101	TRINITY_DN2609_c0_g1	573	596	584	-32.50	-21.40	0.658461538461538	10.5	1-7,596-590;8-16,586-578;18-21,576-573	x-x,589-587[BULt];17-17,577-577[SIL]	((((.(((((((((...(((((((&)))))))---))))))))).))))	UGUUGUCCGAUCUGCCAGAGCGAG&UUCGCUU---CGGAUUGGAAAAUA	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN2609_c0_g1_584_TPlot.pdf
TRINITY_DN2609_c0_g1:858	si_a180	TRINITY_DN2609_c0_g1	847	867	858	-32.10	-21.30	0.663551401869159	8	1-6,867-862;9-12,859-856;14-21,854-847	7-8,861-860[SIL];13-13,855-855[SIL]	((((((((.((((..((((((&))))))..)))).))))))))	GGGGGGGGCUGUUCCCUAGAC&GUCUAGAUAAUAUCUUUCCCU	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN2609_c0_g1_858_TPlot.pdf
TRINITY_DN2609_c0_g1:906	si_s377	TRINITY_DN2609_c0_g1	896	915	906	-44.10	-28.80	0.653061224489796	7	1-7,915-909;9-14,907-902;16-19,901-898	8-8,908-908[SIL];15-15,x-x[BULq];20-21,897-896[UP3]	..((((-((((((.(((((((&))))))).)))))).))))..	UGGAGG-GGACGCUCGAGCGG&UCGCUCGCGUGUCCGCCUUAC	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN2609_c0_g1_906_TPlot.pdf
TRINITY_DN260_c0_g1:3434	si_s59	TRINITY_DN260_c0_g1	3423	3446	3434	-29.20	-19.90	0.681506849315068	8.5	1-5,3446-3442;6-21,3438-3423	x-x,3441-3439[BULt]	((((((((((((((((...(((((&)))))---))))))))))))))))	AAAUGGAAGUUGUUAAGAUUUUGA&UCAAG---UUAGCAACUUCUAUUU	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN260_c0_g1_3434_TPlot.pdf
TRINITY_DN260_c1_g1:4106	si_a398	TRINITY_DN260_c1_g1	4095	4115	4106	-22.40	-14.60	0.651785714285714	7.5	3-9,4113-4107;11-20,4105-4096	1-2,4115-4114[UP5];10-10,4106-4106[SIL];21-21,4095-4095[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CAGAUGAAACAUUUCUAUACC&AAUAUAGAAUUGUUUUGUUUA	4	0.999999999997959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN260_c1_g1_4106_TPlot.pdf
TRINITY_DN260_c1_g1:4908	si_s217	TRINITY_DN260_c1_g1	4896	4917	4908	-35.80	-24.00	0.670391061452514	7.5	2-6,4916-4912;8-13,4910-4905;14-19,4903-4898	1-1,4917-4917[UP5];7-7,4911-4911[SIL];x-x,4904-4904[BULt];20-21,4897-4896[UP3]	..((((((.((((((.(((((.&.))))).))))))-))))))..	GGUCGCGCUGGUUUCUGACACC&UGUGUUCGAAACC-GCGUGAAU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN260_c1_g1_4908_TPlot.pdf
TRINITY_DN260_c1_g1:5018	si_a160	TRINITY_DN260_c1_g1	5008	5027	5018	-35.20	-24.60	0.698863636363636	8.5	4-7,5024-5021;9-12,5019-5016;14-21,5015-5008	1-3,5027-5025[UP5];8-8,5020-5020[SIL];13-13,x-x[BULq]	((((((((-((((.((((...&...)))).)))).))))))))	CGGGUGAG-AGAUAGACCAGG&UAAGGUCAAUCUAUUCACCCG	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a160_TRINITY_DN260_c1_g1_5018_TPlot.pdf
TRINITY_DN260_c1_g1:508	si_a868	TRINITY_DN260_c1_g1	497	516	508	-24.80	-17.90	0.721774193548387	5.5	1-5,516-512;7-20,511-498	6-6,x-x[BULq];21-21,497-497[UP3]	.((((((((((((((-(((((&))))).)))))))))))))).	CGCAGCUGGAUUUUU-AUAAU&AUUAUUAAAGAUUUAGUUGCA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN260_c1_g1_508_TPlot.pdf
TRINITY_DN260_c5_g1:1513	si_s71	TRINITY_DN260_c5_g1	1502	1522	1513	-25.70	-17.40	0.67704280155642	8	1-5,1522-1518;7-19,1516-1504	6-6,1517-1517[SIL];20-21,1503-1502[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AUGGAGGAAAAGAAAAGGAGG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN260_c5_g1_1513_TPlot.pdf
TRINITY_DN260_c5_g1:1646	si_s87	TRINITY_DN260_c5_g1	1635	1655	1646	-32.90	-24.00	0.729483282674772	9	5-21,1651-1635	1-4,1655-1652[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGGCGAAGGGGAAGAAAUACC&UUCCUUUCUUCUUCUUCGCUU	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN260_c5_g1_1646_TPlot.pdf
TRINITY_DN260_c5_g1:2083	si_s887	TRINITY_DN260_c5_g1	2081	2092	2083	-26.80	-17.80	0.664179104477612	1	11-21,2091-2081	10-10,2092-2092[SIL]	(((((((((((.&.)))))))))))	AGAGAAAGCCUU&AAAAAUAAAUAG	2	0.97359694244819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN260_c5_g1_2083_TPlot.pdf
TRINITY_DN260_c5_g1:2091	si_s888	TRINITY_DN260_c5_g1	2080	2100	2091	-26.80	-18.70	0.697761194029851	17	10-21,2091-2080	1-9,2100-2092[UP5]	((((((((((((.........&.........))))))))))))	AAGAGAAAGCCUUCAGAUAUG&AAAAUAAAUAGGCUUUCUCUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN260_c5_g1_2091_TPlot.pdf
TRINITY_DN260_c5_g1:2526	si_a319	TRINITY_DN260_c5_g1	2515	2535	2526	-22.40	-16.26	0.725892857142857	7	1-11,2535-2525;16-21,2520-2515	12-15,2524-2521[SIL]	((((((....(((((((((((&)))))))))))....))))))	GAUAGAUUGCUCAUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN260_c5_g1_2526_TPlot.pdf
TRINITY_DN260_c5_g1:2527	si_a318	TRINITY_DN260_c5_g1	2516	2536	2527	-22.50	-15.16	0.673777777777778	6.5	2-12,2535-2525;17-21,2520-2516	1-1,2536-2536[UP5];13-16,2524-2521[SIL]	(((((....(((((((((((.&.)))))))))))....)))))	AUAGAUUGCUCAUGGAUGAAG&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999989552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN260_c5_g1_2527_TPlot.pdf
TRINITY_DN260_c5_g1:3258	si_a355	TRINITY_DN260_c5_g1	3247	3273	3258	-26.80	-18.90	0.705223880597015	14	1-9,3273-3265;10-21,3258-3247	x-x,3264-3259[BULt]	((((((((((((......(((((((((&)))))))))------))))))))))))	UCUGGUCAAAAUACCGAGAGAAUUGAU&AUUAAUUCU------AUUUUGAUCGGA	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN260_c5_g1_3258_TPlot.pdf
TRINITY_DN260_c5_g1:3265	si_a354	TRINITY_DN260_c5_g1	3248	3274	3265	-26.20	-18.10	0.690839694656489	14	1-10,3274-3265;11-21,3258-3248	x-x,3264-3259[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	CUGGUCAAAAUACCGAGAGAAUUGAUA&UAUUAAUUCU------AUUUUGAUCGG	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN260_c5_g1_3265_TPlot.pdf
TRINITY_DN260_c5_g1:3266	si_a353	TRINITY_DN260_c5_g1	3249	3275	3266	-24.00	-15.70	0.654166666666667	15	2-11,3274-3265;12-21,3258-3249	1-1,3275-3275[UP5];x-x,3264-3259[BULt]	((((((((((......((((((((((.&.))))))))))------))))))))))	UGGUCAAAAUACCGAGAGAAUUGAUAA&AUAUUAAUUCU------AUUUUGAUCG	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN260_c5_g1_3266_TPlot.pdf
TRINITY_DN260_c5_g1:3337	si_s558	TRINITY_DN260_c5_g1	3326	3346	3337	-28.20	-18.60	0.659574468085106	6.5	2-18,3345-3329	1-1,3346-3346[UP5];19-21,3328-3326[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUUUUCCGAAAAUAUUGGUUG&GAAUUAAUAUUUUCGGGACAA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN260_c5_g1_3337_TPlot.pdf
TRINITY_DN260_c5_g1:3338	si_s557	TRINITY_DN260_c5_g1	3327	3348	3338	-28.80	-18.90	0.65625	6.5	1-2,3348-3347;3-19,3345-3329	x-x,3346-3346[BULt];20-21,3328-3327[UP3]	..(((((((((((((((((.((&))-)))))))))))))))))..	UUUUCCGAAAAUAUUGGUUGCU&AG-AAUUAAUAUUUUCGGGACA	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN260_c5_g1_3338_TPlot.pdf
TRINITY_DN260_c5_g1:3339	si_s556	TRINITY_DN260_c5_g1	3328	3349	3339	-28.50	-19.70	0.691228070175439	6	1-3,3349-3347;4-20,3345-3329	x-x,3346-3346[BULt];21-21,3328-3328[UP3]	.(((((((((((((((((.(((&)))-))))))))))))))))).	UUUCCGAAAAUAUUGGUUGCUG&UAG-AAUUAAUAUUUUCGGGAC	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN260_c5_g1_3339_TPlot.pdf
TRINITY_DN260_c5_g1:3340	si_s555	TRINITY_DN260_c5_g1	3329	3350	3340	-26.90	-19.70	0.732342007434944	6.5	2-4,3349-3347;5-21,3345-3329	1-1,3350-3350[UP5];x-x,3346-3346[BULt]	(((((((((((((((((.(((.&.)))-)))))))))))))))))	UUCCGAAAAUAUUGGUUGCUGG&AUAG-AAUUAAUAUUUUCGGGA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN260_c5_g1_3340_TPlot.pdf
TRINITY_DN260_c5_g1:3341	si_s554	TRINITY_DN260_c5_g1	3330	3351	3341	-25.90	-18.30	0.706563706563707	8.5	3-5,3349-3347;6-21,3345-3330	1-2,3351-3350[UP5];x-x,3346-3346[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	UCCGAAAAUAUUGGUUGCUGGU&AAUAG-AAUUAAUAUUUUCGGG	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN260_c5_g1_3341_TPlot.pdf
TRINITY_DN26106_c0_g1:895	si_a783	TRINITY_DN26106_c0_g1	884	908	895	-24.70	-16.20	0.65587044534413	14.5	1-6,908-903;7-17,898-888	x-x,902-899[BULt];18-21,887-884[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	AACAGGAGGAAUAGAUGGUGGAGUU&AACUCU----UCUAUUUUUCUAUUU	2	0.999999999999781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN26106_c0_g1_895_TPlot.pdf
TRINITY_DN26108_c5_g1:13	si_a887	TRINITY_DN26108_c5_g1	2	29	13	-22.90	-15.20	0.663755458515284	17.5	1-7,29-23;8-19,15-4	x-x,22-16[BULt];20-21,3-2[UP3]	..((((((((((((.......(((((((&)))))))-------))))))))))))..	AAAUUAUUGCUGUAAUUUAUUUUGAUUG&CAAUCAA-------UAUAGUAAUAAUAA	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN26108_c5_g1_13_TPlot.pdf
TRINITY_DN2610_c0_g2:1237	si_s8	TRINITY_DN2610_c0_g2	1226	1246	1237	-21.30	-18.60	0.873239436619718	5	1-11,1246-1236;13-21,1234-1226	12-12,1235-1235[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GAUGUGGUGCUAAUAAGUGAU&AUUACUUAUUAUUACUAUAUU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN2610_c0_g2_1237_TPlot.pdf
TRINITY_DN2610_c0_g2:1241	si_s4	TRINITY_DN2610_c0_g2	1230	1251	1241	-21.60	-14.80	0.685185185185185	6	1-4,1251-1248;5-15,1246-1236;17-21,1234-1230	x-x,1247-1247[BULt];16-16,1235-1235[SIL]	(((((.(((((((((((.((((&))))-))))))))))).)))))	UGGUGCUAAUAAGUGAUGAUGA&UUAU-AUUACUUAUUAUUACUA	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN2610_c0_g2_1241_TPlot.pdf
TRINITY_DN2610_c0_g2:2364	si_s87	TRINITY_DN2610_c0_g2	2353	2373	2364	-32.90	-21.60	0.656534954407295	10.5	6-20,2368-2354	1-5,2373-2369[UP5];21-21,2353-2353[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAGUGAAGAAGAAGAACCACC&UUCCUUUCUUCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2610_c0_g2_2364_TPlot.pdf
TRINITY_DN2610_c0_g2:2365	si_s86	TRINITY_DN2610_c0_g2	2354	2374	2365	-32.90	-21.60	0.656534954407295	11.5	7-21,2368-2354	1-6,2374-2369[UP5]	(((((((((((((((......&......)))))))))))))))	AGUGAAGAAGAAGAACCACCG&UUUCCUUUCUUCUUCUUCGCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2610_c0_g2_2365_TPlot.pdf
TRINITY_DN2610_c0_g2:2449	si_a787	TRINITY_DN2610_c0_g2	2438	2458	2449	-26.30	-18.90	0.718631178707224	5.5	1-9,2458-2450;11-12,2448-2447;14-20,2445-2439	10-10,2449-2449[SIL];13-13,2446-2446[SIL];21-21,2438-2438[UP3]	.(((((((.((.(((((((((&))))))))).)).))))))).	CGGGAAAUCGAUAAAUGGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2610_c0_g2_2449_TPlot.pdf
TRINITY_DN2610_c0_g2:2450	si_a786	TRINITY_DN2610_c0_g2	2439	2459	2450	-26.60	-18.60	0.699248120300752	5.5	2-10,2458-2450;12-13,2448-2447;15-21,2445-2439	1-1,2459-2459[UP5];11-11,2449-2449[SIL];14-14,2446-2446[SIL]	(((((((.((.(((((((((.&.))))))))).)).)))))))	GGGAAAUCGAUAAAUGGAAGG&UCUUCUAUUUUUCUAUUUUCC	3	0.999999706441462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2610_c0_g2_2450_TPlot.pdf
TRINITY_DN2610_c0_g2:2590	si_s63	TRINITY_DN2610_c0_g2	2579	2601	2590	-25.80	-17.00	0.65891472868217	12	1-9,2601-2593;10-16,2590-2584	x-x,2592-2591[BULt];17-21,2583-2579[UP3]	.....(((((((..(((((((((&)))))))))--))))))).....	GAUACGGUAGAAACGUUGCUGGC&GUUAGCAAC--UUCUAUUUUUUU	4	0.99999993802016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2610_c0_g2_2590_TPlot.pdf
TRINITY_DN2610_c0_g2:2593	si_s62	TRINITY_DN2610_c0_g2	2580	2602	2593	-26.50	-18.10	0.683018867924528	11	1-10,2602-2593;11-17,2590-2584	x-x,2592-2591[BULt];18-21,2583-2580[UP3]	....(((((((..((((((((((&))))))))))--)))))))....	AUACGGUAGAAACGUUGCUGGCU&AGUUAGCAAC--UUCUAUUUUUU	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN2610_c0_g2_2593_TPlot.pdf
TRINITY_DN2610_c0_g2:2594	si_s61	TRINITY_DN2610_c0_g2	2581	2603	2594	-26.50	-19.00	0.716981132075472	10	1-11,2603-2593;12-18,2590-2584	x-x,2592-2591[BULt];19-21,2583-2581[UP3]	...(((((((..(((((((((((&)))))))))))--)))))))...	UACGGUAGAAACGUUGCUGGCUU&AAGUUAGCAAC--UUCUAUUUUU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN2610_c0_g2_2594_TPlot.pdf
TRINITY_DN2610_c0_g2:2597	si_s58	TRINITY_DN2610_c0_g2	2584	2606	2597	-29.30	-19.10	0.651877133105802	10	4-14,2603-2593;15-21,2590-2584	1-3,2606-2604[UP5];x-x,2592-2591[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GGUAGAAACGUUGCUGGCUUCUA&UUCAAGUUAGCAAC--UUCUAUU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN2610_c0_g2_2597_TPlot.pdf
TRINITY_DN2610_c0_g2:2603	si_s52	TRINITY_DN2610_c0_g2	2592	2616	2603	-31.30	-21.40	0.68370607028754	13	1-2,2616-2615;4-9,2613-2608;10-20,2603-2593	3-3,2614-2614[SIL];x-x,2607-2604[BULt];21-21,2592-2592[UP3]	.(((((((((((....((((((.((&)).))))))----))))))))))).	CGUUGCUGGCUUCUACGAAAUCGGA&UUGGAUUUC----AAGUUAGCAACU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN2610_c0_g2_2603_TPlot.pdf
TRINITY_DN2610_c0_g2:2666	si_s527	TRINITY_DN2610_c0_g2	2655	2677	2666	-28.00	-18.40	0.657142857142857	9	2-7,2676-2671;8-20,2668-2656	1-1,2677-2677[UP5];x-x,2670-2669[BULt];21-21,2655-2655[UP3]	.(((((((((((((..((((((.&.))))))--))))))))))))).	CGAUCAGAGAUGAUGUUUUGGAG&AUUCGAA--AUCAUUUUUGAUCC	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN2610_c0_g2_2666_TPlot.pdf
TRINITY_DN2610_c0_g2:2683	si_a66	TRINITY_DN2610_c0_g2	2672	2692	2683	-26.70	-17.70	0.662921348314607	9.5	1-11,2692-2682;14-15,2679-2678;17-19,2676-2674	12-13,2681-2680[SIL];16-16,2677-2677[SIL];20-21,2673-2672[UP3]	..(((.((..(((((((((((&)))))))))))..)).)))..	UUGGAGGAGAUGAAGGAGGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.99999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN2610_c0_g2_2683_TPlot.pdf
TRINITY_DN26111_c1_g1:66	si_a776	TRINITY_DN26111_c1_g1	55	74	66	-27.10	-18.00	0.664206642066421	5.5	1-3,74-72;5-8,70-67;10-21,66-55	4-4,71-71[SIL];9-9,x-x[BULq]	((((((((((((-((((.(((&))).)))).))))))))))))	AAGGUGGAAGAG-UGAACCAA&UUGAUUCAACUCUUCUAUUUU	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN26111_c1_g1_66_TPlot.pdf
TRINITY_DN26111_c1_g1:67	si_a775	TRINITY_DN26111_c1_g1	56	75	67	-27.20	-18.60	0.683823529411765	5.5	1-4,75-72;6-9,70-67;11-21,66-56	5-5,71-71[SIL];10-10,x-x[BULq]	(((((((((((-((((.((((&)))).)))).)))))))))))	AGGUGGAAGAG-UGAACCAAU&AUUGAUUCAACUCUUCUAUUU	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN26111_c1_g1_67_TPlot.pdf
TRINITY_DN2612_c0_g1:101	si_a785	TRINITY_DN2612_c0_g1	90	117	101	-25.90	-17.30	0.667953667953668	20	1-9,117-109;10-12,101-99;14-21,97-90	x-x,108-102[BULt];13-13,98-98[SIL]	((((((((.(((.......(((((((((&)))))))))-------))).))))))))	GAAGAUGGUGAACUUUACUGUGGAGGAG&CUCUUCUAU-------UUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2612_c0_g1_101_TPlot.pdf
TRINITY_DN2612_c0_g1:340	si_a68	TRINITY_DN2612_c0_g1	330	349	340	-25.40	-16.80	0.661417322834646	7.5	1-9,349-341;12-15,338-335;18-21,333-330	10-11,340-339[SIL];16-17,334-334[AILq]	((((.-((((..(((((((((&)))))))))..))))..))))	UGAAU-ACGAGAUGAAGGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999999617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN2612_c0_g1_340_TPlot.pdf
TRINITY_DN2612_c0_g1:352	si_s78	TRINITY_DN2612_c0_g1	341	362	352	-26.20	-17.30	0.66030534351145	9.5	1-5,362-358;6-10,356-352;12-20,350-342	x-x,357-357[BULt];11-11,351-351[SIL];21-21,341-341[UP3]	.(((((((((.(((((.(((((&)))))-))))).))))))))).	UGAAGGAAGGCGAGGGCAAGAA&UUUUU-UUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2612_c0_g1_352_TPlot.pdf
TRINITY_DN2612_c0_g1:353	si_s77	TRINITY_DN2612_c0_g1	342	362	353	-25.50	-17.50	0.686274509803922	8.5	1-5,362-358;7-11,356-352;13-21,350-342	6-6,357-357[SIL];12-12,351-351[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	GAAGGAAGGCGAGGGCAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2612_c0_g1_353_TPlot.pdf
TRINITY_DN2612_c0_g1:527	si_a299	TRINITY_DN2612_c0_g1	516	536	527	-28.30	-18.90	0.667844522968198	18.5	9-19,528-518	1-8,536-529[UP5];20-21,517-516[UP3]	..(((((((((((........&........)))))))))))..	CGCCGAGCGAGUCCGCCCUGU&UUAAAAAAGAUUCGCUUGGAU	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN2612_c0_g1_527_TPlot.pdf
TRINITY_DN2612_c0_g1:796	si_a501	TRINITY_DN2612_c0_g1	783	806	796	-33.50	-22.20	0.662686567164179	11	1-6,806-801;7-12,799-794;13-19,791-785	x-x,800-800[BULt];x-x,793-792[BULt];20-21,784-783[UP3]	..(((((((..((((((.((((((&))))))-))))))--)))))))..	UCCCAAGGAGAAGAUGAUGGAACG&CGUUUU-UCGUCU--UCCUUGGAA	3	0.999999999972944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2612_c0_g1_796_TPlot.pdf
TRINITY_DN2614_c0_g1:4125	si_a782	TRINITY_DN2614_c0_g1	4114	4134	4125	-26.40	-17.40	0.659090909090909	7.5	1-4,4134-4131;6-12,4129-4123;14-18,4121-4117	5-5,4130-4130[SIL];13-13,4122-4122[SIL];19-21,4116-4114[UP3]	...(((((.(((((((.((((&)))).))))))).)))))...	AGCAGAGAUAUAGAGGUGUUG&CAACUCUUCUAUUUUUCUAUU	3	0.999999999251633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2614_c0_g1_4125_TPlot.pdf
TRINITY_DN2614_c0_g1:5505	si_s63	TRINITY_DN2614_c0_g1	5494	5514	5505	-25.80	-18.00	0.697674418604651	9	1-13,5514-5502	14-21,5501-5494[UP3]	........(((((((((((((&)))))))))))))........	GAAGCAGAAGAAGUUGUUAAC&GUUAGCAACUUCUAUUUUUUU	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2614_c0_g1_5505_TPlot.pdf
TRINITY_DN2614_c0_g1:6363	si_s658	TRINITY_DN2614_c0_g1	6352	6372	6363	-37.30	-24.90	0.667560321715818	6.5	3-13,6370-6360;15-21,6358-6352	1-2,6372-6371[UP5];14-14,6359-6359[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	UCAAUUCAGUCUCCCGGUUCG&ACAAUCGGGGGAUCGAAUUGA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s658_TRINITY_DN2614_c0_g1_6363_TPlot.pdf
TRINITY_DN2614_c0_g1:6491	si_a298	TRINITY_DN2614_c0_g1	6480	6500	6491	-28.10	-18.40	0.654804270462633	16.5	9-21,6492-6480	1-8,6500-6493[UP5]	(((((((((((((........&........)))))))))))))	UUCGAGCGGAUCUGACAUUGC&UUUAAAAAAGAUUCGCUUGGA	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN2614_c0_g1_6491_TPlot.pdf
TRINITY_DN2614_c0_g1:8525	si_a402	TRINITY_DN2614_c0_g1	8514	8534	8525	-22.40	-14.60	0.651785714285714	6.5	1-6,8534-8529;8-16,8527-8519;18-20,8517-8515	7-7,8528-8528[SIL];17-17,8518-8518[SIL];21-21,8514-8514[UP3]	.(((.(((((((((.((((((&)))))).))))))))).))).	UGUAGAGACAAAACUGUUCUG&UAGAAUUGUUUUGUUUAUAUU	2	0.99999999648342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN2614_c0_g1_8525_TPlot.pdf
TRINITY_DN2614_c0_g1:8526	si_a401	TRINITY_DN2614_c0_g1	8515	8535	8526	-22.60	-16.20	0.716814159292035	6	1-7,8535-8529;9-17,8527-8519;19-21,8517-8515	8-8,8528-8528[SIL];18-18,8518-8518[SIL]	(((.(((((((((.(((((((&))))))).))))))))).)))	GUAGAGACAAAACUGUUCUGU&AUAGAAUUGUUUUGUUUAUAU	2	0.982270976238932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2614_c0_g1_8526_TPlot.pdf
TRINITY_DN2614_c0_g1:8527	si_a400	TRINITY_DN2614_c0_g1	8516	8536	8527	-22.80	-17.30	0.758771929824561	7.5	1-8,8536-8529;10-18,8527-8519	9-9,8528-8528[SIL];19-21,8518-8516[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UAGAGACAAAACUGUUCUGUA&UAUAGAAUUGUUUUGUUUAUA	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2614_c0_g1_8527_TPlot.pdf
TRINITY_DN2614_c0_g1:8528	si_a399	TRINITY_DN2614_c0_g1	8517	8537	8528	-22.60	-17.30	0.765486725663717	7.5	2-9,8536-8529;11-19,8527-8519	1-1,8537-8537[UP5];10-10,8528-8528[SIL];20-21,8518-8517[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AGAGACAAAACUGUUCUGUAA&AUAUAGAAUUGUUUUGUUUAU	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2614_c0_g1_8528_TPlot.pdf
TRINITY_DN2614_c0_g1:8529	si_a398	TRINITY_DN2614_c0_g1	8518	8538	8529	-22.40	-17.30	0.772321428571429	8.5	3-10,8536-8529;12-20,8527-8519	1-2,8538-8537[UP5];11-11,8528-8528[SIL];21-21,8518-8518[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	GAGACAAAACUGUUCUGUAAU&AAUAUAGAAUUGUUUUGUUUA	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2614_c0_g1_8529_TPlot.pdf
TRINITY_DN26156_c0_g1:397	si_a756	TRINITY_DN26156_c0_g1	386	406	397	-33.10	-29.60	0.894259818731118	7	3-19,404-388	1-2,406-405[UP5];20-21,387-386[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AGCAAAGGCCCAGAGGAGGAA&AACCUCCUUUGGGUUUUUGAU	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN26156_c0_g1_397_TPlot.pdf
TRINITY_DN26156_c0_g1:398	si_a755	TRINITY_DN26156_c0_g1	387	407	398	-34.90	-29.60	0.848137535816619	8	4-20,404-388	1-3,407-405[UP5];21-21,387-387[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GCAAAGGCCCAGAGGAGGAAG&GAACCUCCUUUGGGUUUUUGA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN26156_c0_g1_398_TPlot.pdf
TRINITY_DN26156_c0_g1:401	si_a752	TRINITY_DN26156_c0_g1	390	410	401	-34.80	-25.50	0.732758620689655	12.5	7-21,404-390	1-6,410-405[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGCCCAGAGGAGGAAGCAA&CAUGAACCUCCUUUGGGUUUU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN26156_c0_g1_401_TPlot.pdf
TRINITY_DN2615_c0_g1:1508	si_s119	TRINITY_DN2615_c0_g1	1497	1517	1508	-27.40	-18.28	0.667153284671533	8	1-5,1517-1513;9-20,1509-1498	6-8,1512-1510[SIL];21-21,1497-1497[UP3]	.((((((((((((...(((((&)))))...)))))))))))).	ACAGCUUUUCUAUGUCUCUAU&AUAGAAAAAUAGAAGAGUUGA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN2615_c0_g1_1508_TPlot.pdf
TRINITY_DN2615_c0_g1:1509	si_s118	TRINITY_DN2615_c0_g1	1498	1518	1509	-26.40	-18.48	0.7	8	2-6,1517-1513;10-21,1509-1498	1-1,1518-1518[UP5];7-9,1512-1510[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	CAGCUUUUCUAUGUCUCUAUA&AAUAGAAAAAUAGAAGAGUUG	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN2615_c0_g1_1509_TPlot.pdf
TRINITY_DN26162_c0_g1:1004	si_s803	TRINITY_DN26162_c0_g1	993	1013	1004	-26.00	-19.20	0.738461538461538	14	7-19,1007-995	1-6,1013-1008[UP5];20-21,994-993[UP3]	..(((((((((((((......&......)))))))))))))..	ACAGGGUGACGAAGAAGGACU&AUUUUAUCUUCGUUACCUUUU	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN26162_c0_g1_1004_TPlot.pdf
TRINITY_DN26162_c0_g1:929	si_a559	TRINITY_DN26162_c0_g1	919	938	929	-36.80	-24.90	0.676630434782609	5.5	3-16,936-923;19-21,921-919	1-2,938-937[UP5];17-18,922-922[AILq]	(((.-((((((((((((((..&..))))))))))))))..)))	CGAC-UACGGGGAGAUAAACG&UCUUUAUCUCCCCGUGAAUCG	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN26162_c0_g1_929_TPlot.pdf
TRINITY_DN26162_c0_g1:931	si_a557	TRINITY_DN26162_c0_g1	920	940	931	-33.40	-23.20	0.694610778443114	10.5	5-18,936-923	1-4,940-937[UP5];19-21,922-920[UP3]	...((((((((((((((....&....))))))))))))))...	GACUACGGGGAGAUAAACGCU&UUUCUUUAUCUCCCCGUGAAU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN26162_c0_g1_931_TPlot.pdf
TRINITY_DN26170_c0_g2:481	si_a742	TRINITY_DN26170_c0_g2	469	491	481	-44.90	-30.00	0.66815144766147	9.5	1-7,491-485;9-12,482-479;13-20,477-470	8-8,484-483[AILt];x-x,478-478[BULt];21-21,469-469[UP3]	.((((((((.((((..(((((((&)))))))-.))))-)))))))).	CGAGGUUCACUGGUAAGGGGGUG&UACCCCU-GGCCA-UGAACCUCC	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a742_TRINITY_DN26170_c0_g2_481_TPlot.pdf
TRINITY_DN26181_c1_g1:84	si_s78	TRINITY_DN26181_c1_g1	68	94	84	-26.20	-17.30	0.66030534351145	9.5	1-9,94-86;10-16,84-78;17-21,72-68	x-x,85-85[BULt];x-x,77-73[BULt]	(((((.....(((((((.(((((((((&)))))))))-)))))))-----)))))	AGAAGCUAUAGAAGGAGAAGAAAAAGA&UUUUUUUCU-UUCCUUU-----CUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN26181_c1_g1_84_TPlot.pdf
TRINITY_DN2619_c0_g1:1350	si_a411	TRINITY_DN2619_c0_g1	1339	1358	1350	-17.90	-11.90	0.664804469273743	7	1-6,1358-1353;8-19,1352-1341	7-7,x-x[BULq];20-21,1340-1339[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	UAUUAUUUAGAUAU-AACGGA&UUUGUUUAUAUUUAAAUAAAU	4	0.999999999892583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2619_c0_g1_1350_TPlot.pdf
TRINITY_DN261_c0_g1:293	si_s169	TRINITY_DN261_c0_g1	276	302	293	-44.00	-29.80	0.677272727272727	9.5	2-15,301-288;16-17,286-285;18-20,279-277	1-1,302-302[UP5];x-x,287-287[BULt];x-x,284-280[BULt];21-21,276-276[UP3]	.(((.....((.((((((((((((((.&.))))))))))))))-))-----))).	GCGGACAUCGCGGUCUUUGCCCCUGGA&GCCAGGGGUAAAGAU-GC-----CCGA	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s169_TRINITY_DN261_c0_g1_293_TPlot.pdf
TRINITY_DN261_c0_g1:294	si_s168	TRINITY_DN261_c0_g1	277	303	294	-45.40	-29.60	0.651982378854626	10.5	3-16,301-288;17-18,286-285;19-21,279-277	1-2,303-302[UP5];x-x,287-287[BULt];x-x,284-280[BULt]	(((.....((.((((((((((((((..&..))))))))))))))-))-----)))	CGGACAUCGCGGUCUUUGCCCCUGGAA&GGCCAGGGGUAAAGAU-GC-----CCG	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s168_TRINITY_DN261_c0_g1_294_TPlot.pdf
TRINITY_DN261_c0_g1:296	si_s166	TRINITY_DN261_c0_g1	284	305	296	-42.40	-27.90	0.658018867924528	10.5	5-18,301-288;19-20,286-285	1-4,305-302[UP5];x-x,287-287[BULt];21-21,284-284[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	CGCGGUCUUUGCCCCUGGAAGA&AUGGCCAGGGGUAAAGAU-GCC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s166_TRINITY_DN261_c0_g1_296_TPlot.pdf
TRINITY_DN261_c0_g1:3700	si_a379	TRINITY_DN261_c0_g1	3686	3709	3700	-23.90	-17.60	0.736401673640168	8.5	3-13,3707-3697;14-20,3693-3687	1-2,3709-3708[UP5];x-x,3696-3694[BULt];21-21,3686-3686[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	GUCUUAGUCCUUCGAGAUCAUUCC&AAAAUGAUUUCGA---AUUAAGAA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a379_TRINITY_DN261_c0_g1_3700_TPlot.pdf
TRINITY_DN261_c0_g1:3870	si_a709	TRINITY_DN261_c0_g1	3859	3879	3870	-26.60	-18.30	0.68796992481203	10	3-9,3877-3871;12-19,3868-3861	1-2,3879-3878[UP5];10-11,3870-3869[SIL];20-21,3860-3859[UP3]	..((((((((..(((((((..&..)))))))..))))))))..	GCACGAUUAUGCUGGGAUGCC&UACAUUCCAAAAUAAUCGUUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN261_c0_g1_3870_TPlot.pdf
TRINITY_DN261_c0_g1:4067	si_a66	TRINITY_DN261_c0_g1	4056	4075	4067	-26.70	-17.50	0.655430711610487	8.5	2-9,4074-4067;13-21,4064-4056	1-1,4075-4075[UP5];10-12,4066-4065[AILq]	(((((((((..-((((((((.&.))))))))...)))))))))	GAAAACAAUGC-GAAGAAGCC&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN261_c0_g1_4067_TPlot.pdf
TRINITY_DN261_c0_g1:4371	si_a442	TRINITY_DN261_c0_g1	4355	4380	4371	-29.30	-20.50	0.699658703071672	11.5	2-13,4379-4368;14-20,4362-4356	1-1,4380-4380[UP5];x-x,4367-4363[BULt];21-21,4355-4355[UP3]	.(((((((.....((((((((((((.&.))))))))))))-----))))))).	GGACGAUUAUCAAGUCUCGUGUCCGG&UUGGAUAUGAGAU-----AAUUGUUG	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN261_c0_g1_4371_TPlot.pdf
TRINITY_DN261_c0_g1:4372	si_a441	TRINITY_DN261_c0_g1	4356	4381	4372	-29.30	-20.70	0.706484641638225	11.5	2-14,4380-4368;15-21,4362-4356	1-1,4381-4381[UP5];x-x,4367-4363[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	GACGAUUAUCAAGUCUCGUGUCCGGA&GUUGGAUAUGAGAU-----AAUUGUU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN261_c0_g1_4372_TPlot.pdf
TRINITY_DN261_c0_g1:4440	si_a759	TRINITY_DN261_c0_g1	4429	4449	4440	-32.60	-23.08	0.707975460122699	10.5	1-9,4449-4441;13-20,4437-4430	10-12,4440-4438[SIL];21-21,4429-4429[UP3]	.((((((((...(((((((((&)))))))))...)))))))).	GCAGUCGGAUGACCGGAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN261_c0_g1_4440_TPlot.pdf
TRINITY_DN261_c0_g1:4441	si_a758	TRINITY_DN261_c0_g1	4430	4450	4441	-34.00	-25.48	0.749411764705882	8.5	1-10,4450-4441;14-21,4437-4430	11-13,4440-4438[SIL]	((((((((...((((((((((&))))))))))...))))))))	CAGUCGGAUGACCGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN261_c0_g1_4441_TPlot.pdf
TRINITY_DN261_c0_g1:4442	si_a757	TRINITY_DN261_c0_g1	4431	4451	4442	-33.10	-23.88	0.721450151057402	7.5	1-11,4451-4441;15-21,4437-4431	12-14,4440-4438[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	AGUCGGAUGACCGGAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN261_c0_g1_4442_TPlot.pdf
TRINITY_DN261_c0_g1:4443	si_a756	TRINITY_DN261_c0_g1	4432	4452	4443	-33.10	-24.08	0.727492447129909	6.5	1-12,4452-4441;16-21,4437-4432	13-15,4440-4438[SIL]	((((((...((((((((((((&))))))))))))...))))))	GUCGGAUGACCGGAGGAGGUU&AACCUCCUUUGGGUUUUUGAU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN261_c0_g1_4443_TPlot.pdf
TRINITY_DN261_c0_g1:4444	si_a755	TRINITY_DN261_c0_g1	4433	4453	4444	-34.90	-24.08	0.689971346704871	6.5	1-13,4453-4441;17-21,4437-4433	14-16,4440-4438[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	UCGGAUGACCGGAGGAGGUUU&GAACCUCCUUUGGGUUUUUGA	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN261_c0_g1_4444_TPlot.pdf
TRINITY_DN261_c0_g1:4446	si_a753	TRINITY_DN261_c0_g1	4435	4455	4446	-33.10	-21.60	0.652567975830816	11.5	3-15,4453-4441	1-2,4455-4454[UP5];16-21,4440-4435[UP3]	......(((((((((((((..&..)))))))))))))......	GGAUGACCGGAGGAGGUUUUG&AUGAACCUCCUUUGGGUUUUU	3	0.999999846412027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN261_c0_g1_4446_TPlot.pdf
TRINITY_DN261_c0_g1:4448	si_a751	TRINITY_DN261_c0_g1	4437	4456	4448	-37.20	-24.90	0.669354838709677	8	1-3,4456-4454;5-17,4453-4441	4-4,x-x[BULq];18-21,4440-4437[UP3]	....(((((((((((((-(((&))).)))))))))))))....	AUGACCGGAGGAGGUUU-UGG&CCAUGAACCUCCUUUGGGUUU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN261_c0_g1_4448_TPlot.pdf
TRINITY_DN261_c0_g1:4662	si_s489	TRINITY_DN261_c0_g1	4651	4673	4662	-17.90	-12.60	0.70391061452514	7.5	1-9,4673-4665;10-19,4662-4653	x-x,4664-4663[BULt];20-21,4652-4651[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	AAUGUUUGUAUUAAUAAAUAAGU&AUUUAUUUA--AAUAUAAACAAA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN261_c0_g1_4662_TPlot.pdf
TRINITY_DN261_c0_g1:511	si_a796	TRINITY_DN261_c0_g1	501	523	511	-32.70	-21.60	0.660550458715596	10.5	2-8,522-516;9-18,512-503;20-21,502-501	1-1,523-523[UP5];x-x,515-513[BULt];19-19,x-x[BULq]	((-((((((((((...(((((((.&.)))))))---)))))))))).))	GC-UCGGGUUGGACCGAAAUGGGC&UUCUAUUU---UCCAAUCCGAAGC	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN261_c0_g1_511_TPlot.pdf
TRINITY_DN261_c0_g1:516	si_a794	TRINITY_DN261_c0_g1	502	525	516	-28.60	-19.60	0.685314685314685	14.5	4-10,522-516;11-20,512-503	1-3,525-523[UP5];x-x,515-513[BULt];21-21,502-502[UP3]	.((((((((((...(((((((...&...)))))))---)))))))))).	CUCGGGUUGGACCGAAAUGGGCAA&UUUUCUAUUU---UCCAAUCCGAA	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN261_c0_g1_516_TPlot.pdf
TRINITY_DN261_c0_g1:517	si_a793	TRINITY_DN261_c0_g1	503	526	517	-28.50	-19.30	0.67719298245614	15.5	5-11,522-516;12-21,512-503	1-4,526-523[UP5];x-x,515-513[BULt]	((((((((((...(((((((....&....)))))))---))))))))))	UCGGGUUGGACCGAAAUGGGCAAU&UUUUUCUAUUU---UCCAAUCCGA	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN261_c0_g1_517_TPlot.pdf
TRINITY_DN26206_c0_g1:64	si_a690	TRINITY_DN26206_c0_g1	53	72	64	-35.90	-24.00	0.668523676880223	6.5	1-5,72-68;8-16,66-58;18-20,56-54	6-7,67-67[AILq];17-17,57-57[SIL];21-21,53-53[UP3]	.(((.(((((((((.-(((((&)))))..))))))))).))).	AGCCUGUUGUGUUCC-AACCG&CGGUUUCGAACACAACUGGUA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a690_TRINITY_DN26206_c0_g1_64_TPlot.pdf
TRINITY_DN2620_c0_g1:648	si_a118	TRINITY_DN2620_c0_g1	637	658	648	-30.70	-20.80	0.677524429967427	10.5	3-9,656-650;10-19,648-639	1-2,658-657[UP5];x-x,649-649[BULt];20-21,638-637[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	CCUGCUGUAAGACCAGGCUUAA&ACGAGCUUG-UUUUAUAGCAAU	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN2620_c0_g1_648_TPlot.pdf
TRINITY_DN26214_c0_g1:160	si_s78	TRINITY_DN26214_c0_g1	148	169	160	-26.20	-17.10	0.652671755725191	5	1-11,169-159;13-19,157-151;20-21,149-148	12-12,158-158[SIL];x-x,150-150[BULt]	((.(((((((.(((((((((((&))))))))))).)))))))-))	AGAAAGAAAGUAAAGAAGAGAA&UUUUUUUCUUUCCUUUCUU-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN26214_c0_g1_160_TPlot.pdf
TRINITY_DN26214_c0_g1:161	si_s77	TRINITY_DN26214_c0_g1	150	170	161	-25.50	-17.30	0.67843137254902	4	1-12,170-159;14-20,157-151	13-13,158-158[SIL];21-21,150-150[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AAAGAAAGUAAAGAAGAGAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN26214_c0_g1_161_TPlot.pdf
TRINITY_DN26214_c0_g1:162	si_s76	TRINITY_DN26214_c0_g1	151	171	162	-23.60	-17.30	0.733050847457627	4	2-13,170-159;15-21,157-151	1-1,171-171[UP5];14-14,158-158[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGAAAGUAAAGAAGAGAAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN26214_c0_g1_162_TPlot.pdf
TRINITY_DN26214_c0_g1:163	si_s75	TRINITY_DN26214_c0_g1	152	172	163	-24.00	-16.40	0.683333333333333	6	3-14,170-159;16-21,157-152	1-2,172-171[UP5];15-15,158-158[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAAGUAAAGAAGAGAAAAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN26214_c0_g1_163_TPlot.pdf
TRINITY_DN26218_c0_g1:1039	si_s77	TRINITY_DN26218_c0_g1	1025	1048	1039	-25.50	-16.60	0.650980392156863	13.5	1-11,1048-1038;12-18,1034-1028	x-x,1037-1035[BULt];19-21,1027-1025[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	ACUGGAAGGAUUAGAGAAAGGAGA&UUUUUUUUCUU---UCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN26218_c0_g1_1039_TPlot.pdf
TRINITY_DN26218_c0_g1:1040	si_s76	TRINITY_DN26218_c0_g1	1026	1049	1040	-23.60	-16.60	0.703389830508475	13.5	2-12,1048-1038;13-19,1034-1028	1-1,1049-1049[UP5];x-x,1037-1035[BULt];20-21,1027-1026[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	CUGGAAGGAUUAGAGAAAGGAGAA&AUUUUUUUUCUU---UCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN26218_c0_g1_1040_TPlot.pdf
TRINITY_DN26218_c0_g1:1041	si_s75	TRINITY_DN26218_c0_g1	1027	1050	1041	-24.00	-16.60	0.691666666666667	11	3-13,1048-1038;14-20,1034-1028	1-2,1050-1049[UP5];x-x,1037-1035[BULt];21-21,1027-1027[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	UGGAAGGAUUAGAGAAAGGAGAAG&UAUUUUUUUUCUU---UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN26218_c0_g1_1041_TPlot.pdf
TRINITY_DN26218_c0_g1:1042	si_s70	TRINITY_DN26218_c0_g1	1028	1051	1042	-25.80	-17.90	0.693798449612403	8	1-6,1051-1046;8-14,1044-1038;15-21,1034-1028	7-7,1045-1045[SIL];x-x,1037-1035[BULt]	(((((((...(((((((.((((((&)))))).)))))))---)))))))	GGAAGGAUUAGAGAAAGGAGAAGU&ACUUCUAUUUUUUU---UCUUUCC	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN26218_c0_g1_1042_TPlot.pdf
TRINITY_DN26218_c0_g1:1043	si_a791	TRINITY_DN26218_c0_g1	1032	1052	1043	-26.50	-17.60	0.664150943396226	6.5	1-9,1052-1044;11-15,1042-1038;17-21,1036-1032	10-10,1043-1043[SIL];16-16,1037-1037[SIL]	(((((.(((((.(((((((((&))))))))).))))).)))))	GGAUUAGAGAAAGGAGAAGUA&UAUUUUUCUAUUUUCCAAUCC	3	0.999999353490657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN26218_c0_g1_1043_TPlot.pdf
TRINITY_DN2621_c0_g1:1298	si_a881	TRINITY_DN2621_c0_g1	1287	1307	1298	-27.80	-18.80	0.676258992805755	8.5	1-14,1307-1294	15-21,1293-1287[UP3]	.......((((((((((((((&)))))))))))))).......	AGCAGAAAUUGAUUGCAGCUG&UAGUUGCAAUCAAUAUAGUAA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN2621_c0_g1_1298_TPlot.pdf
TRINITY_DN2621_c0_g1:295	si_s69	TRINITY_DN2621_c0_g1	284	304	295	-23.40	-16.70	0.713675213675214	7	1-10,304-295;12-20,293-285	11-11,294-294[SIL];21-21,284-284[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AAAAGAGGAGUAAUAGGGGUU&AACUUCUAUUUUUUUUCUUUC	4	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2621_c0_g1_295_TPlot.pdf
TRINITY_DN2621_c0_g1:501	si_s12	TRINITY_DN2621_c0_g1	490	511	501	-22.80	-14.90	0.653508771929825	7.5	1-3,511-509;5-14,506-497;16-21,495-490	4-4,508-507[AILt];15-15,496-496[SIL]	((((((.((((((((((..(((&)))-.)))))))))).))))))	GGUCGAAAUAGUAAUAGGCAAG&CUU-AUUAUUACUAUAUUGAUU	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN2621_c0_g1_501_TPlot.pdf
TRINITY_DN2622_c0_g1:134	si_s6	TRINITY_DN2622_c0_g1	122	143	134	-21.70	-14.50	0.668202764976959	7	1-12,143-132;13-13,130-130;16-20,127-123	x-x,131-131[BULt];14-15,129-128[SIL];21-21,122-122[UP3]	.(((((..(.((((((((((((&))))))))))))-)..))))).	AAUAGUUUUAAAUGAGUGAUAU&AUAUUACUUAUU-AUUACUAUA	2	0.999368946623723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN2622_c0_g1_134_TPlot.pdf
TRINITY_DN2622_c0_g1:139	si_s1	TRINITY_DN2622_c0_g1	128	148	139	-18.70	-12.40	0.663101604278075	12.5	5-17,144-132	1-4,148-145[UP5];18-21,131-128[UP3]	....(((((((((((((....&....)))))))))))))....	UUUAAAUGAGUGAUAUAUUUU&UUUUUAUAUUACUUAUUAUUA	2	0.999999456418668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN2622_c0_g1_139_TPlot.pdf
TRINITY_DN26231_c0_g1:1770	si_s11	TRINITY_DN26231_c0_g1	1759	1779	1770	-23.60	-15.50	0.656779661016949	7.5	1-5,1779-1775;8-18,1772-1762	6-7,1774-1773[SIL];19-21,1761-1759[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	CAAAAUGUAGUAAUUUUAAGU&ACUUAUUAUUACUAUAUUGAU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN26231_c0_g1_1770_TPlot.pdf
TRINITY_DN26231_c0_g1:412	si_a476	TRINITY_DN26231_c0_g1	401	421	412	-22.90	-16.00	0.698689956331878	7	1-17,421-405;19-19,403-403	18-18,404-404[SIL];20-21,402-401[UP3]	..(.(((((((((((((((((&))))))))))))))))).)..	UGUGUAUAUAAUGAUGAUUGC&GUAAUUAUUGUUAUAUAGAAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN26231_c0_g1_412_TPlot.pdf
TRINITY_DN26231_c0_g1:414	si_a474	TRINITY_DN26231_c0_g1	403	423	414	-23.60	-15.80	0.669491525423729	8	3-19,421-405;21-21,403-403	1-2,423-422[UP5];20-20,404-404[SIL]	(.(((((((((((((((((..&..))))))))))))))))).)	UGUAUAUAAUGAUGAUUGCCC&AUGUAAUUAUUGUUAUAUAGA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN26231_c0_g1_414_TPlot.pdf
TRINITY_DN26231_c0_g1:722	si_a783	TRINITY_DN26231_c0_g1	712	733	722	-24.70	-16.20	0.65587044534413	6	1-9,733-725;10-16,722-716;18-21,715-712	x-x,724-723[BULt];17-17,x-x[BULq]	((((-(((((((..(((((((((&)))))))))--))))))).))))	AGAU-GAGAAAUGCAGAAGAGUU&AACUCUUCU--AUUUUUCUAUUU	2	0.999999999999797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN26231_c0_g1_722_TPlot.pdf
TRINITY_DN26231_c0_g1:726	si_a781	TRINITY_DN26231_c0_g1	713	735	726	-27.40	-18.40	0.671532846715328	8.5	2-11,734-725;12-18,722-716	1-1,735-735[UP5];x-x,724-723[BULt];19-21,715-713[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	GAUGAGAAAUGCAGAAGAGUUGU&UCAACUCUUCU--AUUUUUCUAU	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN26231_c0_g1_726_TPlot.pdf
TRINITY_DN26231_c0_g1:727	si_a780	TRINITY_DN26231_c0_g1	714	736	727	-27.30	-18.40	0.673992673992674	9.5	3-12,734-725;13-19,722-716	1-2,736-735[UP5];x-x,724-723[BULt];20-21,715-714[UP3]	..(((((((..((((((((((..&..))))))))))--)))))))..	AUGAGAAAUGCAGAAGAGUUGUG&UUCAACUCUUCU--AUUUUUCUA	3	0.99999280884472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN26231_c0_g1_727_TPlot.pdf
TRINITY_DN26231_c0_g1:728	si_a779	TRINITY_DN26231_c0_g1	715	737	728	-27.00	-18.40	0.681481481481481	8.5	4-13,734-725;14-20,722-716	1-3,737-735[UP5];x-x,724-723[BULt];21-21,715-715[UP3]	.(((((((..((((((((((...&...))))))))))--))))))).	UGAGAAAUGCAGAAGAGUUGUGU&AUUCAACUCUUCU--AUUUUUCU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN26231_c0_g1_728_TPlot.pdf
TRINITY_DN26231_c0_g1:729	si_a778	TRINITY_DN26231_c0_g1	716	738	729	-28.30	-21.40	0.756183745583039	5.5	1-3,738-736;5-14,734-725;15-21,722-716	4-4,735-735[SIL];x-x,724-723[BULt]	(((((((..((((((((((.(((&))).))))))))))--)))))))	GAGAAAUGCAGAAGAGUUGUGUC&GAUUCAACUCUUCU--AUUUUUC	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN26231_c0_g1_729_TPlot.pdf
TRINITY_DN26231_c0_g1:730	si_a777	TRINITY_DN26231_c0_g1	717	739	730	-27.00	-18.60	0.688888888888889	6.5	2-4,738-736;6-15,734-725;16-21,722-717	1-1,739-739[UP5];5-5,735-735[SIL];x-x,724-723[BULt]	((((((..((((((((((.(((.&.))).))))))))))--))))))	AGAAAUGCAGAAGAGUUGUGUCU&UGAUUCAACUCUUCU--AUUUUU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN26231_c0_g1_730_TPlot.pdf
TRINITY_DN26231_c0_g1:731	si_a776	TRINITY_DN26231_c0_g1	718	740	731	-27.10	-17.80	0.656826568265683	8.5	3-5,738-736;7-16,734-725;17-21,722-718	1-2,740-739[UP5];6-6,735-735[SIL];x-x,724-723[BULt]	(((((..((((((((((.(((..&..))).))))))))))--)))))	GAAAUGCAGAAGAGUUGUGUCUA&UUGAUUCAACUCUUCU--AUUUU	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN26231_c0_g1_731_TPlot.pdf
TRINITY_DN26231_c0_g1:732	si_a775	TRINITY_DN26231_c0_g1	721	741	732	-27.20	-17.70	0.650735294117647	12	4-6,738-736;8-17,734-725	1-3,741-739[UP5];7-7,735-735[SIL];18-21,724-721[UP3]	....((((((((((.(((...&...))).))))))))))....	AUGCAGAAGAGUUGUGUCUAU&AUUGAUUCAACUCUUCUAUUU	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN26231_c0_g1_732_TPlot.pdf
TRINITY_DN2623_c0_g1:2338	si_s524	TRINITY_DN2623_c0_g1	2326	2347	2338	-23.90	-16.40	0.686192468619247	4.5	1-15,2347-2333;17-20,2330-2327	16-16,2332-2331[AILt];21-21,2326-2326[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	ACAAGUUAUGAUUUUGAAUUAA&UUAAUUCGAAAUCAU-UUUUGA	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN2623_c0_g1_2338_TPlot.pdf
TRINITY_DN2623_c0_g1:2339	si_s523	TRINITY_DN2623_c0_g1	2327	2348	2339	-24.50	-16.50	0.673469387755102	4.5	2-16,2347-2333;18-21,2330-2327	1-1,2348-2348[UP5];17-17,2332-2331[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	CAAGUUAUGAUUUUGAAUUAAC&CUUAAUUCGAAAUCAU-UUUUG	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN2623_c0_g1_2339_TPlot.pdf
TRINITY_DN26248_c0_g1:797	si_s698	TRINITY_DN26248_c0_g1	785	806	797	-27.00	-18.20	0.674074074074074	11	5-11,802-796;12-21,794-785	1-4,806-803[UP5];x-x,795-795[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	UUCAUUGAUGAAAUCGACGCCA&AUUAGUCGAUU-UAUUAGUGAA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN26248_c0_g1_797_TPlot.pdf
TRINITY_DN2625_c2_g1:298	si_a76	TRINITY_DN2625_c2_g1	287	307	298	-21.20	-16.70	0.787735849056604	7.5	4-19,304-289	1-3,307-305[UP5];20-21,288-287[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUGAUAAUGAAAAACAAAUG&AAAUUGUUUUUCAUUAUUAAG	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN2625_c2_g1_298_TPlot.pdf
TRINITY_DN26262_c0_g1:19	si_a766	TRINITY_DN26262_c0_g1	5	28	19	-30.50	-20.30	0.665573770491803	12.5	1-12,28-17;13-18,13-8	x-x,16-14[BULt];19-21,7-5[UP3]	...((((((...((((((((((((&))))))))))))---))))))...	AUGUGAAUUUUUAGUCAGAGACCC&GGGUUUUUGAUU---GAUUCAACU	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN26262_c0_g1_19_TPlot.pdf
TRINITY_DN26262_c0_g1:21	si_a764	TRINITY_DN26262_c0_g1	7	30	21	-28.90	-21.30	0.737024221453287	8	2-14,29-17;15-20,13-8	1-1,30-30[UP5];x-x,16-14[BULt];21-21,7-7[UP3]	.((((((...(((((((((((((.&.)))))))))))))---)))))).	GUGAAUUUUUAGUCAGAGACCCAU&UUGGGUUUUUGAUU---GAUUCAA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN26262_c0_g1_21_TPlot.pdf
TRINITY_DN2626_c0_g1:948	si_a20	TRINITY_DN2626_c0_g1	937	957	948	-26.70	-18.70	0.700374531835206	6.5	1-16,957-942	17-21,941-937[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUACCUAAAAAUAAGUAGGU&GCCUAUUUAUUUUUAGUUCUA	0	0.144520093910131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2626_c0_g1_948_TPlot.pdf
TRINITY_DN2626_c0_g1:949	si_a19	TRINITY_DN2626_c0_g1	938	958	949	-27.00	-18.90	0.7	7	2-17,957-942	1-1,958-958[UP5];18-21,941-938[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUACCUAAAAAUAAGUAGGUA&AGCCUAUUUAUUUUUAGUUCU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN2626_c0_g1_949_TPlot.pdf
TRINITY_DN2626_c0_g1:951	si_a17	TRINITY_DN2626_c0_g1	940	960	951	-24.30	-18.90	0.777777777777778	9	4-19,957-942	1-3,960-958[UP5];20-21,941-940[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACCUAAAAAUAAGUAGGUAGG&AAAGCCUAUUUAUUUUUAGUU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN2626_c0_g1_951_TPlot.pdf
TRINITY_DN2626_c0_g1:952	si_a16	TRINITY_DN2626_c0_g1	941	961	952	-26.30	-18.90	0.718631178707224	10	5-20,957-942	1-4,961-958[UP5];21-21,941-941[UP3]	.((((((((((((((((....&....)))))))))))))))).	CCUAAAAAUAAGUAGGUAGGU&GAAAGCCUAUUUAUUUUUAGU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN2626_c0_g1_952_TPlot.pdf
TRINITY_DN2626_c0_g1:953	si_a15	TRINITY_DN2626_c0_g1	942	962	953	-26.20	-18.60	0.709923664122137	11	6-21,957-942	1-5,962-958[UP5]	((((((((((((((((.....&.....))))))))))))))))	CUAAAAAUAAGUAGGUAGGUA&AGAAAGCCUAUUUAUUUUUAG	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN2626_c0_g1_953_TPlot.pdf
TRINITY_DN26277_c0_g1:1101	si_s436	TRINITY_DN26277_c0_g1	1090	1110	1101	-19.60	-14.70	0.75	8.5	2-16,1109-1095	1-1,1110-1110[UP5];17-21,1094-1090[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUGAAUAGUAUGUGAUUGUA&AAUAAUUACAUAUUAUAUAUA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN26277_c0_g1_1101_TPlot.pdf
TRINITY_DN26277_c0_g1:1102	si_s435	TRINITY_DN26277_c0_g1	1091	1111	1102	-20.90	-14.70	0.703349282296651	9.5	3-17,1109-1095	1-2,1111-1110[UP5];18-21,1094-1091[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUGAAUAGUAUGUGAUUGUAA&CAAUAAUUACAUAUUAUAUAU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN26277_c0_g1_1102_TPlot.pdf
TRINITY_DN26277_c0_g1:1105	si_s432	TRINITY_DN26277_c0_g1	1094	1116	1105	-21.30	-15.20	0.713615023474178	10.5	3-5,1114-1112;6-20,1109-1095	1-2,1116-1115[UP5];x-x,1111-1110[BULt];21-21,1094-1094[UP3]	.(((((((((((((((..(((..&..)))--))))))))))))))).	AAUAGUAUGUGAUUGUAAUGUAA&UAACA--AUAAUUACAUAUUAUA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN26277_c0_g1_1105_TPlot.pdf
TRINITY_DN26286_c0_g1:537	si_s250	TRINITY_DN26286_c0_g1	525	546	537	-33.30	-24.00	0.720720720720721	7.5	1-13,546-534;14-17,532-529	x-x,533-533[BULt];18-21,528-525[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	UCAUAUAUCGUCGGGGGAUGCC&GGCAUUUCCCGAU-AUAUUACU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN26286_c0_g1_537_TPlot.pdf
TRINITY_DN26286_c0_g1:732	si_a487	TRINITY_DN26286_c0_g1	721	741	732	-24.80	-16.70	0.673387096774194	14	7-19,735-723	1-6,741-736[UP5];20-21,722-721[UP3]	..(((((((((((((......&......)))))))))))))..	GCGAACGGCAUAUUCCCAUUG&UAUAUAGAAUAUGUCGUUUUU	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN26286_c0_g1_732_TPlot.pdf
TRINITY_DN26286_c0_g1:850	si_s82	TRINITY_DN26286_c0_g1	839	860	850	-28.90	-19.60	0.678200692041523	8	1-8,860-853;9-14,851-846;16-20,844-840	x-x,852-852[BULt];15-15,845-845[SIL];21-21,839-839[UP3]	.(((((.((((((.((((((((&))))))))-)))))).))))).	UGGAGGCAGAAAGCGAGAGGGA&UUUCUUUC-CUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN26286_c0_g1_850_TPlot.pdf
TRINITY_DN2628_c0_g1:249	si_s64	TRINITY_DN2628_c0_g1	237	258	249	-24.10	-15.90	0.659751037344398	6	1-10,258-249;11-11,247-247;13-20,245-238	x-x,248-248[BULt];12-12,246-246[SIL];21-21,237-237[UP3]	.((((((((.(.((((((((((&))))))))))-).)))))))).	UAAAGAAGUUGAAAGUUGCUAA&UUAGCAACUU-CUAUUUUUUUU	4	0.999999999997385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2628_c0_g1_249_TPlot.pdf
TRINITY_DN2628_c0_g1:250	si_s63	TRINITY_DN2628_c0_g1	238	259	250	-25.80	-17.20	0.666666666666667	4.5	1-11,259-249;12-12,247-247;14-21,245-238	x-x,248-248[BULt];13-13,246-246[SIL]	((((((((.(.(((((((((((&)))))))))))-).))))))))	AAAGAAGUUGAAAGUUGCUAAU&GUUAGCAACUU-CUAUUUUUUU	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2628_c0_g1_250_TPlot.pdf
TRINITY_DN262_c0_g2:1340	si_a70	TRINITY_DN262_c0_g2	1329	1349	1340	-23.90	-15.90	0.665271966527197	7	1-6,1349-1344;8-15,1342-1335;17-20,1333-1330	7-7,1343-1343[SIL];16-16,1334-1334[SIL];21-21,1329-1329[UP3]	.((((.((((((((.((((((&)))))).)))))))).)))).	UAUGAUGGACAAUUAGGAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999999999979621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN262_c0_g2_1340_TPlot.pdf
TRINITY_DN262_c0_g2:1341	si_a69	TRINITY_DN262_c0_g2	1330	1350	1341	-24.00	-16.60	0.691666666666667	6	1-7,1350-1344;9-16,1342-1335;18-21,1333-1330	8-8,1343-1343[SIL];17-17,1334-1334[SIL]	((((.((((((((.(((((((&))))))).)))))))).))))	AUGAUGGACAAUUAGGAGGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999594151943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN262_c0_g2_1341_TPlot.pdf
TRINITY_DN262_c0_g2:1690	si_a899	TRINITY_DN262_c0_g2	1679	1699	1690	-18.70	-14.40	0.770053475935829	8.5	4-18,1696-1682	1-3,1699-1697[UP5];19-21,1681-1679[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACCUUAUGUUACUUAUUAGUU&UAAUAAUAAGUAAUAUAAAAA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN262_c0_g2_1690_TPlot.pdf
TRINITY_DN262_c0_g2:1691	si_a898	TRINITY_DN262_c0_g2	1680	1700	1691	-20.50	-14.40	0.702439024390244	9.5	5-19,1696-1682	1-4,1700-1697[UP5];20-21,1681-1680[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCUUAUGUUACUUAUUAGUUU&GUAAUAAUAAGUAAUAUAAAA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN262_c0_g2_1691_TPlot.pdf
TRINITY_DN262_c0_g2:1692	si_a897	TRINITY_DN262_c0_g2	1681	1701	1692	-21.20	-14.40	0.679245283018868	10.5	6-20,1696-1682	1-5,1701-1697[UP5];21-21,1681-1681[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUUAUGUUACUUAUUAGUUUU&AGUAAUAAUAAGUAAUAUAAA	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN262_c0_g2_1692_TPlot.pdf
TRINITY_DN262_c0_g2:1693	si_a896	TRINITY_DN262_c0_g2	1682	1702	1693	-21.60	-14.10	0.652777777777778	11.5	7-21,1696-1682	1-6,1702-1697[UP5]	(((((((((((((((......&......)))))))))))))))	UUAUGUUACUUAUUAGUUUUU&UAGUAAUAAUAAGUAAUAUAA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN262_c0_g2_1693_TPlot.pdf
TRINITY_DN26305_c0_g1:1210	si_a466	TRINITY_DN26305_c0_g1	1198	1219	1210	-21.50	-14.20	0.66046511627907	6	2-12,1218-1208;13-20,1206-1199	1-1,1219-1219[UP5];x-x,1207-1207[BULt];21-21,1198-1198[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UUAGUAAUUCACAUAUUGUAUU&UAUAUAAUAUGU-AAUUAUUGU	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN26305_c0_g1_1210_TPlot.pdf
TRINITY_DN26310_c0_g1:334	si_s76	TRINITY_DN26310_c0_g1	318	343	334	-23.60	-16.00	0.677966101694915	15.5	2-12,342-332;13-19,326-320	1-1,343-343[UP5];x-x,331-327[BULt];20-21,319-318[UP3]	..(((((((.....(((((((((((.&.)))))))))))-----)))))))..	UCGGAAGGAGGAGCAAGAGAAGAAAG&AUUUUUUUUCUU-----UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN26310_c0_g1_334_TPlot.pdf
TRINITY_DN26310_c0_g1:390	si_s89	TRINITY_DN26310_c0_g1	368	399	390	-35.30	-24.80	0.702549575070822	16	1-15,399-385;16-20,373-369	x-x,384-374[BULt];21-21,368-368[UP3]	.(((((...........(((((((((((((((&)))))))))))))))-----------))))).	AGGAGCUGAAACAAUUGGAGGAGGAAGAGGGG&CCUUUCUUCUUCUUC-----------GCUUCG	3	0.999999706441462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN26310_c0_g1_390_TPlot.pdf
TRINITY_DN26310_c0_g1:391	si_s88	TRINITY_DN26310_c0_g1	369	400	391	-34.80	-26.00	0.747126436781609	15	1-16,400-385;17-21,373-369	x-x,384-374[BULt]	(((((...........((((((((((((((((&))))))))))))))))-----------)))))	GGAGCUGAAACAAUUGGAGGAGGAAGAGGGGA&UCCUUUCUUCUUCUUC-----------GCUUC	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN26310_c0_g1_391_TPlot.pdf
TRINITY_DN26310_c0_g1:394	si_s85	TRINITY_DN26310_c0_g1	383	403	394	-33.80	-26.40	0.781065088757396	7	2-19,402-385	1-1,403-403[UP5];20-21,384-383[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UGGAGGAGGAAGAGGGGAAGA&CUUUCCUUUCUUCUUCUUCGC	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN26310_c0_g1_394_TPlot.pdf
TRINITY_DN26310_c0_g1:398	si_s81	TRINITY_DN26310_c0_g1	387	406	398	-28.90	-23.50	0.813148788927336	6	2-7,405-400;9-21,399-387	1-1,406-406[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GGAGGAAGAGGGG-AAGAAAU&UUUUCUUUCCUUUCUUCUUCU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN26310_c0_g1_398_TPlot.pdf
TRINITY_DN26310_c0_g1:506	si_a785	TRINITY_DN26310_c0_g1	495	519	506	-25.90	-17.18	0.663320463320463	14	1-7,519-513;9-20,507-496	8-8,512-508[AILt];21-21,495-495[UP3]	.((((((((((((.....(((((((&)))))))----.)))))))))))).	AGAAGUAGAGAAGGCAGCAGAAGAG&CUCUUCU----AUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN26310_c0_g1_506_TPlot.pdf
TRINITY_DN26310_c0_g1:605	si_a76	TRINITY_DN26310_c0_g1	594	614	605	-21.20	-13.80	0.650943396226415	13.5	4-18,611-597	1-3,614-612[UP5];19-21,596-594[UP3]	...(((((((((((((((...&...)))))))))))))))...	GGCGAUGGUGGAGGGCAAAGA&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN26310_c0_g1_605_TPlot.pdf
TRINITY_DN26312_c0_g1:539	si_s368	TRINITY_DN26312_c0_g1	528	548	539	-40.10	-28.00	0.698254364089775	6	2-5,547-544;7-17,542-532;19-21,530-528	1-1,548-548[UP5];6-6,543-543[SIL];18-18,531-531[SIL]	(((.(((((((((((.((((.&.)))).))))))))))).)))	ACAGGCGAGUGGUCGCUUCAC&UUGAACCGAUCGCUCGCGUGU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN26312_c0_g1_539_TPlot.pdf
TRINITY_DN26314_c0_g1:5823	si_s815	TRINITY_DN26314_c0_g1	5811	5832	5823	-25.00	-16.80	0.672	9.5	2-13,5831-5820;16-20,5816-5812	1-1,5832-5832[UP5];14-15,5819-5817[AILt];21-21,5811-5811[UP3]	.(((((...((((((((((((.&.))))))))))))-..))))).	CUCGUUUCAUGAGAGAGGGUGU&UUACCUUUUCUUA-AUAAUGAA	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN26314_c0_g1_5823_TPlot.pdf
TRINITY_DN26314_c0_g1:5832	si_s67	TRINITY_DN26314_c0_g1	5821	5841	5832	-25.60	-17.90	0.69921875	10.5	1-3,5841-5839;5-11,5837-5831;13-21,5829-5821	4-4,5838-5838[SIL];12-12,5830-5830[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	GAGAGAGGGUGUGGGGGAUGC&GCAACUUCUAUUUUUUUUCUU	0	0.280497621398358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN26314_c0_g1_5832_TPlot.pdf
TRINITY_DN26316_c0_g1:1686	si_a142	TRINITY_DN26316_c0_g1	1675	1695	1686	-23.50	-17.30	0.736170212765958	10.5	4-17,1692-1679	1-3,1695-1693[UP5];18-21,1678-1675[UP3]	....((((((((((((((...&...))))))))))))))....	AGUCAGCAACAACGGUUAUAU&AAUUAAUCGUUGUUGUUUUAA	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN26316_c0_g1_1686_TPlot.pdf
TRINITY_DN26316_c0_g1:1865	si_a787	TRINITY_DN26316_c0_g1	1854	1875	1865	-26.30	-18.30	0.695817490494297	6	1-6,1875-1870;7-16,1868-1859;19-21,1856-1854	x-x,1869-1869[BULt];17-18,1858-1857[SIL]	(((..((((((((((.((((((&))))))-))))))))))..)))	UGGUCGAUGGAAAAACUGGAAG&CUUCUA-UUUUUCUAUUUUCCA	4	0.999999967315661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN26316_c0_g1_1865_TPlot.pdf
TRINITY_DN26326_c0_g1:1527	si_s774	TRINITY_DN26326_c0_g1	1516	1536	1527	-24.70	-16.40	0.663967611336032	8	4-13,1533-1524;16-21,1521-1516	1-3,1536-1534[UP5];14-15,1523-1522[SIL]	((((((..((((((((((...&...))))))))))..))))))	GUUUUAACGCAGUAGUAACAC&UAAUUACUAUUGCUAUAAAAC	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN26326_c0_g1_1527_TPlot.pdf
TRINITY_DN2632_c0_g1:1633	si_a588	TRINITY_DN2632_c0_g1	1620	1642	1633	-29.00	-19.10	0.658620689655173	8.5	4-15,1639-1628;16-21,1625-1620	1-3,1642-1640[UP5];x-x,1627-1626[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	AAAGUUGCCUGUCCUUUUUGGGG&UAACAAGAAGGACAG--AAUUUU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN2632_c0_g1_1633_TPlot.pdf
TRINITY_DN26331_c0_g1:122	si_s823	TRINITY_DN26331_c0_g1	110	131	122	-22.20	-16.12	0.726126126126126	7	1-13,131-119;17-21,114-110	14-16,118-115[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	AAUUGGCUGUUCAUUGUUGGGA&UCUUAAUAAUGAA-AAACAAUU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN26331_c0_g1_122_TPlot.pdf
TRINITY_DN26331_c0_g1:123	si_s822	TRINITY_DN26331_c0_g1	111	132	123	-22.30	-15.32	0.686995515695067	8	2-14,131-119;18-21,114-111	1-1,132-132[UP5];15-17,118-115[AILt]	((((....(((((((((((((.&.)))))))))))))-...))))	AUUGGCUGUUCAUUGUUGGGAC&UUCUUAAUAAUGAA-AAACAAU	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN26331_c0_g1_123_TPlot.pdf
TRINITY_DN26331_c0_g1:72	si_s436	TRINITY_DN26331_c0_g1	61	81	72	-19.60	-15.10	0.770408163265306	6	1-16,81-66	17-21,65-61[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACUGAAUAAUAUGUGAUUAUU&AAUAAUUACAUAUUAUAUAUA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN26331_c0_g1_72_TPlot.pdf
TRINITY_DN26332_c0_g3:81	si_s440	TRINITY_DN26332_c0_g3	69	90	81	-21.60	-14.22	0.658333333333333	11	1-10,90-81;14-19,76-71	11-13,80-77[AILt];20-21,70-69[UP3]	..((((((....((((((((((&))))))))))-...))))))..	AAGUUAUAGAGGGAUAUGUGAU&AUUACAUAUU-AUAUAUAACAA	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN26332_c0_g3_81_TPlot.pdf
TRINITY_DN26332_c0_g3:89	si_s432	TRINITY_DN26332_c0_g3	78	98	89	-21.30	-17.70	0.830985915492958	7.5	3-18,96-81	1-2,98-97[UP5];19-21,80-78[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGGGAUAUGUGAUUAUUGUCA&UAACAAUAAUUACAUAUUAUA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN26332_c0_g3_89_TPlot.pdf
TRINITY_DN26336_c0_g2:921	si_s181	TRINITY_DN26336_c0_g2	910	930	921	-34.60	-22.58	0.652601156069364	11.5	1-7,930-924;9-10,922-921;14-18,917-913	8-8,923-923[SIL];11-13,920-918[SIL];19-21,912-910[UP3]	...(((((...((.(((((((&))))))).))...)))))...	GUCGAUCGGCUCUGGGGCGUC&GAUGCCCGAGUAACGAUUAUU	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN26336_c0_g2_921_TPlot.pdf
TRINITY_DN2634_c0_g1:4060	si_a792	TRINITY_DN2634_c0_g1	4050	4069	4060	-27.60	-18.20	0.659420289855072	11.5	3-15,4067-4055;18-21,4053-4050	1-2,4069-4068[UP5];16-17,4054-4054[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	CGGAA-GGGGAGUGGGAGGGA&AUUUUUCUAUUUUCCAAUCCG	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2634_c0_g1_4060_TPlot.pdf
TRINITY_DN2634_c0_g2:1544	si_a75	TRINITY_DN2634_c0_g2	1533	1553	1544	-21.30	-17.10	0.802816901408451	9	3-19,1551-1535	1-2,1553-1552[UP5];20-21,1534-1533[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAUAAUGGAGAGCAGUUAA&CAAAUUGUUUUUCAUUAUUAA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2634_c0_g2_1544_TPlot.pdf
TRINITY_DN2634_c0_g2:1797	si_s69	TRINITY_DN2634_c0_g2	1786	1806	1797	-23.40	-16.40	0.700854700854701	12.5	3-18,1804-1789	1-2,1806-1805[UP5];19-21,1788-1786[UP3]	...((((((((((((((((..&..))))))))))))))))...	AACGGAAGGGGAGUGGGAGGG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2634_c0_g2_1797_TPlot.pdf
TRINITY_DN2634_c0_g2:1798	si_a792	TRINITY_DN2634_c0_g2	1788	1807	1798	-27.60	-18.20	0.659420289855072	11.5	3-15,1805-1793;18-21,1791-1788	1-2,1807-1806[UP5];16-17,1792-1792[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	CGGAA-GGGGAGUGGGAGGGA&AUUUUUCUAUUUUCCAAUCCG	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2634_c0_g2_1798_TPlot.pdf
TRINITY_DN2634_c0_g2:2152	si_s76	TRINITY_DN2634_c0_g2	2140	2161	2152	-23.60	-16.10	0.682203389830509	12	5-12,2157-2150;13-21,2148-2140	1-4,2161-2158[UP5];x-x,2149-2149[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	GGGAGAGGGUGAGAAAAAUGUU&AUUUUUUUUCUU-UCCUUUCUU	0	0.914176106375196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2634_c0_g2_2152_TPlot.pdf
TRINITY_DN2634_c0_g2:2153	si_s75	TRINITY_DN2634_c0_g2	2141	2162	2153	-24.00	-15.80	0.658333333333333	12	6-13,2157-2150;14-21,2148-2141	1-5,2162-2158[UP5];x-x,2149-2149[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	GGAGAGGGUGAGAAAAAUGUUG&UAUUUUUUUUCUU-UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2634_c0_g2_2153_TPlot.pdf
TRINITY_DN26356_c0_g1:443	si_s69	TRINITY_DN26356_c0_g1	432	452	443	-23.40	-15.40	0.658119658119658	9.5	4-19,449-434	1-3,452-450[UP5];20-21,433-432[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUAAGAGAAAGAAUAGGAUUG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN26356_c0_g1_443_TPlot.pdf
TRINITY_DN26356_c0_g1:816	si_a755	TRINITY_DN26356_c0_g1	805	825	816	-34.90	-22.80	0.653295128939828	10	5-16,821-810;18-20,808-806	1-4,825-822[UP5];17-17,809-809[SIL];21-21,805-805[UP3]	.(((.((((((((((((....&....)))))))))))).))).	ACAAUGGCCCAAAGGAGUAUA&GAACCUCCUUUGGGUUUUUGA	2	0.999442797370729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN26356_c0_g1_816_TPlot.pdf
TRINITY_DN26358_c2_g2:1000	si_s45	TRINITY_DN26358_c2_g2	989	1009	1000	-24.70	-18.30	0.740890688259109	8	1-5,1009-1005;7-21,1003-989	6-6,1004-1004[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GGCUUGGAAUCUAGUGGUUGG&UUAAUAAUUGGAUUUCAAGUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN26358_c2_g2_1000_TPlot.pdf
TRINITY_DN26358_c2_g2:1731	si_a785	TRINITY_DN26358_c2_g2	1717	1740	1731	-25.90	-18.60	0.718146718146718	7	1-7,1740-1734;9-17,1732-1724;18-21,1720-1717	8-8,1733-1733[SIL];x-x,1723-1721[BULt]	((((...(((((((((.(((((((&))))))).)))))))))---))))	GAGAACCGUAGAGAAAAAGAAGAG&CUCUUCUAUUUUUCUAU---UUUC	2	0.999866830620927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN26358_c2_g2_1731_TPlot.pdf
TRINITY_DN2636_c0_g1:5969	si_a465	TRINITY_DN2636_c0_g1	5958	5978	5969	-20.90	-13.70	0.655502392344498	9	1-14,5978-5965	15-21,5964-5958[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCUUAUACAUAUUGUAUGU&AUAUAUAAUAUGUAAUUAUUG	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN2636_c0_g1_5969_TPlot.pdf
TRINITY_DN2636_c0_g1:6068	si_a465	TRINITY_DN2636_c0_g1	6057	6077	6068	-20.90	-13.70	0.655502392344498	9	1-14,6077-6064	15-21,6063-6057[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCUUAUACAUAUUGUAUGU&AUAUAUAAUAUGUAAUUAUUG	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN2636_c0_g1_6068_TPlot.pdf
TRINITY_DN2636_c0_g1:6074	si_a459	TRINITY_DN2636_c0_g1	6063	6086	6074	-23.20	-16.80	0.724137931034483	11	1-5,6086-6082;6-20,6078-6064	x-x,6081-6079[BULt];21-21,6063-6063[UP3]	.(((((((((((((((...(((((&)))))---))))))))))))))).	AUACAUAUUGUAUGUAUAAAUAGC&GUUGU---UAUAUAUAAUAUGUAA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN2636_c0_g1_6074_TPlot.pdf
TRINITY_DN26394_c0_g1:134	si_a837	TRINITY_DN26394_c0_g1	123	143	134	-25.80	-17.00	0.65891472868217	14.5	8-15,136-129;17-21,127-123	1-7,143-137[UP5];16-16,128-128[SIL]	(((((.((((((((.......&.......)))))))).)))))	GUUAGGAGCUUCUAGAAGAUA&AAAAAAAUAGAAGUUGCUAAC	1	0.0529974440770762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN26394_c0_g1_134_TPlot.pdf
TRINITY_DN26399_c0_g1:238	si_a417	TRINITY_DN26399_c0_g1	227	247	238	-21.40	-16.10	0.752336448598131	5.5	3-19,245-229	1-2,247-246[UP5];20-21,228-227[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUCUGUAUUUAUUUAAAUAAC&UAUAUUUAAAUAAAUAUAGGA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN26399_c0_g1_238_TPlot.pdf
TRINITY_DN2639_c0_g1:592	si_a151	TRINITY_DN2639_c0_g1	578	601	592	-28.90	-20.92	0.723875432525952	12	2-10,600-592;13-21,586-578	1-1,601-601[UP5];11-12,591-587[AILt]	(((((((((.....(((((((((.&.)))))))))---..)))))))))	AGAUUGACCAAUUGAAAACAACGG&UUGUUGUUUU---AAGGUCAAUCU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN2639_c0_g1_592_TPlot.pdf
TRINITY_DN263_c0_g1:1326	si_a876	TRINITY_DN263_c0_g1	1315	1335	1326	-27.30	-18.20	0.666666666666667	9	1-13,1335-1323	14-21,1322-1315[UP3]	........(((((((((((((&)))))))))))))........	UUUUCUGCUGCAACUAAGUCU&AGAUUUAGUUGCAAUCAAUAU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN263_c0_g1_1326_TPlot.pdf
TRINITY_DN263_c0_g1:1327	si_a875	TRINITY_DN263_c0_g1	1316	1336	1327	-27.10	-18.50	0.682656826568266	9	2-14,1335-1323	1-1,1336-1336[UP5];15-21,1322-1316[UP3]	.......(((((((((((((.&.))))))))))))).......	UUUCUGCUGCAACUAAGUCUG&AAGAUUUAGUUGCAAUCAAUA	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN263_c0_g1_1327_TPlot.pdf
TRINITY_DN263_c0_g1:1328	si_a874	TRINITY_DN263_c0_g1	1317	1337	1328	-26.70	-18.50	0.692883895131086	10	3-15,1335-1323	1-2,1337-1336[UP5];16-21,1322-1317[UP3]	......(((((((((((((..&..)))))))))))))......	UUCUGCUGCAACUAAGUCUGA&AAAGAUUUAGUUGCAAUCAAU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN263_c0_g1_1328_TPlot.pdf
TRINITY_DN263_c0_g1:1329	si_a873	TRINITY_DN263_c0_g1	1318	1338	1329	-27.00	-18.50	0.685185185185185	11	4-16,1335-1323	1-3,1338-1336[UP5];17-21,1322-1318[UP3]	.....(((((((((((((...&...))))))))))))).....	UCUGCUGCAACUAAGUCUGAU&UAAAGAUUUAGUUGCAAUCAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN263_c0_g1_1329_TPlot.pdf
TRINITY_DN263_c0_g1:1330	si_a872	TRINITY_DN263_c0_g1	1319	1339	1330	-27.00	-18.50	0.685185185185185	12	5-17,1335-1323	1-4,1339-1336[UP5];18-21,1322-1319[UP3]	....(((((((((((((....&....)))))))))))))....	CUGCUGCAACUAAGUCUGAUG&UUAAAGAUUUAGUUGCAAUCA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN263_c0_g1_1330_TPlot.pdf
TRINITY_DN263_c0_g1:1331	si_a871	TRINITY_DN263_c0_g1	1320	1341	1331	-26.40	-19.00	0.71969696969697	9	1-4,1341-1338;6-18,1335-1323	5-5,1337-1336[AILt];19-21,1322-1320[UP3]	...(((((((((((((..((((&))))-.)))))))))))))...	UGCUGCAACUAAGUCUGAUGAU&AUUA-AAGAUUUAGUUGCAAUC	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN263_c0_g1_1331_TPlot.pdf
TRINITY_DN263_c0_g1:1332	si_a870	TRINITY_DN263_c0_g1	1321	1342	1332	-24.80	-19.80	0.798387096774194	8.5	1-5,1342-1338;7-19,1335-1323	6-6,1337-1336[AILt];20-21,1322-1321[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	GCUGCAACUAAGUCUGAUGAUG&UAUUA-AAGAUUUAGUUGCAAU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN263_c0_g1_1332_TPlot.pdf
TRINITY_DN263_c0_g1:1333	si_a869	TRINITY_DN263_c0_g1	1322	1343	1333	-24.80	-20.20	0.814516129032258	9	2-6,1342-1338;8-20,1335-1323	1-1,1343-1343[UP5];7-7,1337-1336[AILt];21-21,1322-1322[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	CUGCAACUAAGUCUGAUGAUGG&UUAUUA-AAGAUUUAGUUGCAA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN263_c0_g1_1333_TPlot.pdf
TRINITY_DN263_c0_g1:1334	si_a868	TRINITY_DN263_c0_g1	1323	1344	1334	-24.80	-19.90	0.80241935483871	10	3-7,1342-1338;9-21,1335-1323	1-2,1344-1343[UP5];8-8,1337-1336[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	UGCAACUAAGUCUGAUGAUGGA&AUUAUUA-AAGAUUUAGUUGCA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN263_c0_g1_1334_TPlot.pdf
TRINITY_DN263_c0_g1:1335	si_a867	TRINITY_DN263_c0_g1	1324	1342	1335	-24.10	-18.70	0.775933609958506	7.5	2-7,1341-1336;10-21,1335-1324	1-1,1342-1342[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GCAACUAAGUCU--GAUGAUG&AAUUAUUAAAGAUUUAGUUGC	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN263_c0_g1_1335_TPlot.pdf
TRINITY_DN263_c0_g1:1336	si_a866	TRINITY_DN263_c0_g1	1325	1346	1336	-23.30	-16.90	0.725321888412017	9.5	1-2,1346-1345;4-9,1343-1338;11-21,1335-1325	3-3,1344-1344[SIL];10-10,1337-1336[AILt]	(((((((((((..((((((.((&)).))))))-.)))))))))))	CAACUAAGUCUGAUGAUGGAUG&CAAUUAUUA-AAGAUUUAGUUG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN263_c0_g1_1336_TPlot.pdf
TRINITY_DN263_c0_g1:1338	si_a865	TRINITY_DN263_c0_g1	1326	1347	1338	-24.00	-16.80	0.7	9.5	1-3,1347-1345;5-10,1343-1338;12-21,1335-1326	4-4,1344-1344[SIL];11-11,1337-1336[AILt]	((((((((((..((((((.(((&))).))))))-.))))))))))	AACUAAGUCUGAUGAUGGAUGG&CCAAUUAUUA-AAGAUUUAGUU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN263_c0_g1_1338_TPlot.pdf
TRINITY_DN263_c0_g1:1339	si_a864	TRINITY_DN263_c0_g1	1327	1348	1339	-25.00	-17.60	0.704	9.5	1-4,1348-1345;6-11,1343-1338;13-21,1335-1327	5-5,1344-1344[SIL];12-12,1337-1336[AILt]	(((((((((..((((((.((((&)))).))))))-.)))))))))	ACUAAGUCUGAUGAUGGAUGGA&UCCAAUUAUUA-AAGAUUUAGU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a864_TRINITY_DN263_c0_g1_1339_TPlot.pdf
TRINITY_DN263_c0_g1:1340	si_a863	TRINITY_DN263_c0_g1	1328	1349	1340	-24.40	-16.30	0.668032786885246	9.5	2-5,1348-1345;7-12,1343-1338;14-21,1335-1328	1-1,1349-1349[UP5];6-6,1344-1344[SIL];13-13,1337-1336[AILt]	((((((((..((((((.((((.&.)))).))))))-.))))))))	CUAAGUCUGAUGAUGGAUGGAA&AUCCAAUUAUUA-AAGAUUUAG	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN263_c0_g1_1340_TPlot.pdf
TRINITY_DN263_c0_g1:1350	si_s518	TRINITY_DN263_c0_g1	1337	1359	1350	-24.60	-16.16	0.656910569105691	8	1-13,1359-1347;17-21,1341-1337	14-16,1346-1342[AILt]	(((((.....(((((((((((((&)))))))))))))--...)))))	AUGAUGGAUGGAAUUGGGAAUGU&AUAUUCUUAAUUC--GAAAUCAU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN263_c0_g1_1350_TPlot.pdf
TRINITY_DN263_c0_g1:869	si_a20	TRINITY_DN263_c0_g1	858	878	869	-26.70	-19.50	0.730337078651685	10	1-11,878-868;13-18,866-861	12-12,867-867[SIL];19-21,860-858[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UAAGACUGAUGAUGGAUGGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN263_c0_g1_869_TPlot.pdf
TRINITY_DN263_c0_g1:873	si_a16	TRINITY_DN263_c0_g1	862	882	873	-26.30	-20.80	0.790874524714829	8	3-15,880-868;17-21,866-862	1-2,882-881[UP5];16-16,867-867[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	ACUGAUGAUGGAUGGGCUUGG&GAAAGCCUAUUUAUUUUUAGU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN263_c0_g1_873_TPlot.pdf
TRINITY_DN2640_c0_g2:3089	si_a469	TRINITY_DN2640_c0_g2	3078	3098	3089	-21.10	-16.50	0.781990521327014	4	1-7,3098-3092;9-21,3090-3078	8-8,3091-3091[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	AUGACAGUAAUUAAAUGUUAU&AUAAUAUGUAAUUAUUGUUAU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN2640_c0_g2_3089_TPlot.pdf
TRINITY_DN26414_c0_g1:836	si_s76	TRINITY_DN26414_c0_g1	824	845	836	-23.60	-18.30	0.775423728813559	9	3-14,843-832;15-21,830-824	1-2,845-844[UP5];x-x,831-831[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	GAGAAAGAGGAAGAGGGAGACG&AUUUUUUUUCUUUC-CUUUCUU	4	0.999999999968221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN26414_c0_g1_836_TPlot.pdf
TRINITY_DN26414_c0_g1:876	si_s83	TRINITY_DN26414_c0_g1	865	889	876	-30.90	-21.44	0.693851132686084	16	1-8,889-882;12-21,874-865	9-11,881-875[AILt]	((((((((((.......((((((((&))))))))----...))))))))))	GGAGGAGAAGUCGGUUUGGGAAGAA&UUCUUUCC----UUUCUUCUUCUUC	2	0.999999999902412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN26414_c0_g1_876_TPlot.pdf
TRINITY_DN26414_c0_g1:882	si_s81	TRINITY_DN26414_c0_g1	864	891	882	-28.90	-20.10	0.695501730103806	19	2-10,890-882;11-21,874-864	1-1,891-891[UP5];x-x,881-875[BULt]	(((((((((((.......(((((((((.&.)))))))))-------)))))))))))	AGGAGGAGAAGUCGGUUUGGGAAGAAGG&UUUUCUUUCC-------UUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN26414_c0_g1_882_TPlot.pdf
TRINITY_DN26414_c0_g1:885	si_s78	TRINITY_DN26414_c0_g1	867	894	885	-26.20	-17.60	0.67175572519084	12	2-13,893-882;14-21,874-867	1-1,894-894[UP5];x-x,881-875[BULt]	((((((((.......((((((((((((.&.))))))))))))-------))))))))	AGGAGAAGUCGGUUUGGGAAGAAGGAAC&UUUUUUUCUUUCC-------UUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN26414_c0_g1_885_TPlot.pdf
TRINITY_DN2641_c0_g2:127	si_a323	TRINITY_DN2641_c0_g2	115	136	127	-26.80	-17.88	0.667164179104478	10.5	1-10,136-127;16-20,120-116	11-15,126-121[AILt];21-21,115-115[UP3]	.(((((......((((((((((&))))))))))-.....))))).	CAGGAGGUUCAUAAAUCAUGGA&UCCAUGAUUU-UUUUAUUCCUU	4	0.999999855519305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN2641_c0_g2_127_TPlot.pdf
TRINITY_DN2642_c0_g1:923	si_a73	TRINITY_DN2642_c0_g1	911	932	923	-21.90	-15.40	0.703196347031964	7	1-12,932-921;14-20,918-912	13-13,920-919[AILt];21-21,911-911[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	UGUGAUGAUCAAAUAAUUUGGA&UUCAAAUUGUUU-UUCAUUAUU	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2642_c0_g1_923_TPlot.pdf
TRINITY_DN2643_c0_g1:188	si_a784	TRINITY_DN2643_c0_g1	172	197	188	-24.70	-19.50	0.789473684210526	11.5	1-12,197-186;13-21,180-172	x-x,185-181[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	AAAAUGGAAAUAGCAAAUAGGAGAGU&ACUCUUCUAUUU-----UUCUAUUUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2643_c0_g1_188_TPlot.pdf
TRINITY_DN2643_c0_g1:1978	si_a256	TRINITY_DN2643_c0_g1	1967	1987	1978	-37.20	-24.70	0.663978494623656	7.5	1-11,1987-1977;13-18,1975-1970	12-12,1976-1976[SIL];19-21,1969-1967[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AGAUUGCUCACGAUGCAGUCG&CGAUUGUAUCGAGGGCAAACG	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a256_TRINITY_DN2643_c0_g1_1978_TPlot.pdf
TRINITY_DN2643_c0_g1:1979	si_a255	TRINITY_DN2643_c0_g1	1968	1988	1979	-38.10	-25.10	0.658792650918635	6.5	2-12,1987-1977;14-19,1975-1970	1-1,1988-1988[UP5];13-13,1976-1976[SIL];20-21,1969-1968[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	GAUUGCUCACGAUGCAGUCGA&CCGAUUGUAUCGAGGGCAAAC	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a255_TRINITY_DN2643_c0_g1_1979_TPlot.pdf
TRINITY_DN2643_c0_g1:1981	si_a253	TRINITY_DN2643_c0_g1	1970	1991	1981	-41.20	-27.70	0.672330097087379	6.5	2-3,1990-1989;4-14,1987-1977;16-21,1975-1970	1-1,1991-1991[UP5];x-x,1988-1988[BULt];15-15,1976-1976[SIL]	((((((.(((((((((((.((.&.))-))))))))))).))))))	UUGCUCACGAUGCAGUCGAGGA&CCC-CGAUUGUAUCGAGGGCAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN2643_c0_g1_1981_TPlot.pdf
TRINITY_DN2643_c0_g1:2122	si_a787	TRINITY_DN2643_c0_g1	2105	2131	2122	-26.30	-17.70	0.673003802281369	10.5	1-6,2131-2126;8-14,2124-2118;15-21,2111-2105	7-7,2125-2125[SIL];x-x,2117-2112[BULt]	(((((((......(((((((.((((((&)))))).)))))))------)))))))	UGGAAGAAAAUGUUAGGAAAUUGGAAG&CUUCUAUUUUUCUA------UUUUCCA	3	0.999999999996568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2643_c0_g1_2122_TPlot.pdf
TRINITY_DN2643_c0_g1:2123	si_a786	TRINITY_DN2643_c0_g1	2106	2132	2123	-26.60	-17.80	0.669172932330827	10.5	1-7,2132-2126;9-15,2124-2118;16-21,2111-2106	8-8,2125-2125[SIL];x-x,2117-2112[BULt]	((((((......(((((((.(((((((&))))))).)))))))------))))))	GGAAGAAAAUGUUAGGAAAUUGGAAGA&UCUUCUAUUUUUCUA------UUUUCC	3	0.999999999999445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2643_c0_g1_2123_TPlot.pdf
TRINITY_DN2643_c0_g1:2164	si_a787	TRINITY_DN2643_c0_g1	2147	2173	2164	-26.30	-17.70	0.673003802281369	10.5	1-6,2173-2168;8-14,2166-2160;15-21,2153-2147	7-7,2167-2167[SIL];x-x,2159-2154[BULt]	(((((((......(((((((.((((((&)))))).)))))))------)))))))	UGGAAGAAAAUGUUAGGAAAUUGGAAG&CUUCUAUUUUUCUA------UUUUCCA	4	0.999999999999647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2643_c0_g1_2164_TPlot.pdf
TRINITY_DN2643_c0_g1:2165	si_a786	TRINITY_DN2643_c0_g1	2148	2174	2165	-26.60	-17.80	0.669172932330827	10.5	1-7,2174-2168;9-15,2166-2160;16-21,2153-2148	8-8,2167-2167[SIL];x-x,2159-2154[BULt]	((((((......(((((((.(((((((&))))))).)))))))------))))))	GGAAGAAAAUGUUAGGAAAUUGGAAGA&UCUUCUAUUUUUCUA------UUUUCC	4	0.999999999999455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2643_c0_g1_2165_TPlot.pdf
TRINITY_DN2643_c0_g1:2905	si_a363	TRINITY_DN2643_c0_g1	2894	2914	2905	-26.40	-17.80	0.674242424242424	9	1-13,2914-2902	14-21,2901-2894[UP3]	........(((((((((((((&)))))))))))))........	UGGGCCCCUCCGAUCAAGAUA&UAUUUUGAUCGGAUCAAAAAU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN2643_c0_g1_2905_TPlot.pdf
TRINITY_DN2643_c0_g1:2912	si_a356	TRINITY_DN2643_c0_g1	2901	2921	2912	-26.90	-18.00	0.669144981412639	15	8-20,2914-2902	1-7,2921-2915[UP5];21-21,2901-2901[UP3]	.(((((((((((((.......&.......))))))))))))).	CUCCGAUCAAGAUAACUACAA&UUAAUUCUAUUUUGAUCGGAU	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2643_c0_g1_2912_TPlot.pdf
TRINITY_DN2643_c0_g1:4308	si_s69	TRINITY_DN2643_c0_g1	4297	4317	4308	-23.40	-15.40	0.658119658119658	8	3-15,4315-4303;18-21,4300-4297	1-2,4317-4316[UP5];16-17,4302-4301[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GAAAACGAGAAAAUGGAGGGU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2643_c0_g1_4308_TPlot.pdf
TRINITY_DN2643_c0_g1:4372	si_s88	TRINITY_DN2643_c0_g1	4361	4379	4372	-34.80	-22.80	0.655172413793104	8	1-3,4379-4377;6-19,4376-4363	4-5,x-x[BULq];20-21,4362-4361[UP3]	..((((((((((((((--(((&)))..))))))))))))))..	ACGGUGAAGAGGAAGA--GGA&UCCUUUCUUCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2643_c0_g1_4372_TPlot.pdf
TRINITY_DN2643_c0_g1:4373	si_s87	TRINITY_DN2643_c0_g1	4362	4380	4373	-32.90	-22.90	0.696048632218845	8	2-4,4379-4377;7-20,4376-4363	1-1,4380-4380[UP5];5-6,x-x[BULq];21-21,4362-4362[UP3]	.((((((((((((((--(((.&.)))..)))))))))))))).	CGGUGAAGAGGAAGA--GGAC&UUCCUUUCUUCUUCUUCGCUU	3	0.999999999993827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2643_c0_g1_4373_TPlot.pdf
TRINITY_DN2643_c0_g1:4374	si_s86	TRINITY_DN2643_c0_g1	4363	4381	4374	-32.90	-22.90	0.696048632218845	8.5	3-5,4379-4377;8-21,4376-4363	1-2,4381-4380[UP5];6-7,x-x[BULq]	((((((((((((((--(((..&..)))..))))))))))))))	GGUGAAGAGGAAGA--GGACG&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999997542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2643_c0_g1_4374_TPlot.pdf
TRINITY_DN2643_c0_g1:7061	si_s759	TRINITY_DN2643_c0_g1	7050	7070	7061	-23.80	-15.70	0.659663865546218	11	4-16,7067-7055	1-3,7070-7068[UP5];17-21,7054-7050[UP3]	.....(((((((((((((...&...))))))))))))).....	CGCUGGAUUGUUGUUGUUGGG&UAAAACAACAACGAUUAAUUA	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s759_TRINITY_DN2643_c0_g1_7061_TPlot.pdf
TRINITY_DN2643_c0_g1:7062	si_s758	TRINITY_DN2643_c0_g1	7051	7071	7062	-23.50	-15.70	0.668085106382979	12	5-17,7067-7055	1-4,7071-7068[UP5];18-21,7054-7051[UP3]	....(((((((((((((....&....)))))))))))))....	GCUGGAUUGUUGUUGUUGGGC&UUAAAACAACAACGAUUAAUU	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN2643_c0_g1_7062_TPlot.pdf
TRINITY_DN2643_c0_g1:7079	si_s87	TRINITY_DN2643_c0_g1	7068	7088	7079	-32.90	-21.58	0.655927051671732	7.5	2-14,7087-7075;18-21,7071-7068	1-1,7088-7088[UP5];15-17,7074-7072[SIL]	((((...(((((((((((((.&.)))))))))))))...))))	GGGCUAUGGGGAGGAAAGGAC&UUCCUUUCUUCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2643_c0_g1_7079_TPlot.pdf
TRINITY_DN2643_c0_g1:7085	si_s76	TRINITY_DN2643_c0_g1	7074	7094	7085	-23.60	-16.00	0.677966101694915	16.5	8-20,7087-7075	1-7,7094-7088[UP5];21-21,7074-7074[UP3]	.(((((((((((((.......&.......))))))))))))).	UGGGGAGGAAAGGACUGUUGU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2643_c0_g1_7085_TPlot.pdf
TRINITY_DN26445_c0_g1:154	si_s78	TRINITY_DN26445_c0_g1	143	163	154	-26.20	-17.20	0.656488549618321	14.5	6-14,158-150;16-21,148-143	1-5,163-159[UP5];15-15,149-149[SIL]	((((((.(((((((((.....&.....))))))))).))))))	AGAGGGUGGGAGGGGACUUUU&UUUUUUUCUUUCCUUUCUUCU	1	0.748747089625484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN26445_c0_g1_154_TPlot.pdf
TRINITY_DN26445_c1_g1:30	si_s71	TRINITY_DN26445_c1_g1	19	39	30	-25.70	-17.00	0.66147859922179	10	1-5,39-35;7-19,33-21	6-6,34-34[SIL];20-21,20-19[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UCGGGAGAAAAGAGGGGGGAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN26445_c1_g1_30_TPlot.pdf
TRINITY_DN26445_c1_g1:32	si_s89	TRINITY_DN26445_c1_g1	21	41	32	-35.30	-24.50	0.694050991501416	8.5	1-14,41-28;17-20,25-22	15-16,27-26[SIL];21-21,21-21[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	GGGAGAAAAGAGGGGGGAGGG&CCUUUCUUCUUCUUCGCUUCG	3	0.99999997614871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN26445_c1_g1_32_TPlot.pdf
TRINITY_DN2645_c0_g1:2003	si_a788	TRINITY_DN2645_c0_g1	1992	2012	2003	-24.80	-18.70	0.754032258064516	8	1-11,2012-2002;14-20,1999-1993	12-13,2001-2000[SIL];21-21,1992-1992[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	CUGGAAGAGUGGGAAAUAGGG&UUCUAUUUUUCUAUUUUCCAA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2645_c0_g1_2003_TPlot.pdf
TRINITY_DN26483_c5_g1:243	si_s71	TRINITY_DN26483_c5_g1	232	252	243	-25.70	-17.30	0.673151750972763	9.5	1-10,252-243;13-19,240-234	11-12,242-241[SIL];20-21,233-232[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	CAGAAGGAAUUGGAAUAGGAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN26483_c5_g1_243_TPlot.pdf
TRINITY_DN2648_c0_g1:1656	si_s69	TRINITY_DN2648_c0_g1	1643	1665	1656	-23.40	-15.98	0.682905982905983	12.5	3-10,1663-1656;13-21,1651-1643	1-2,1665-1664[UP5];11-12,1655-1652[AILt]	(((((((((....((((((((..&..))))))))--..)))))))))	GAGAGGAAGUAGUAAUAGAAGAA&AACUUCUAUU--UUUUUUCUUUC	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2648_c0_g1_1656_TPlot.pdf
TRINITY_DN2648_c0_g1:1671	si_s77	TRINITY_DN2648_c0_g1	1660	1680	1671	-25.50	-16.60	0.650980392156863	5.5	1-12,1680-1669;15-21,1666-1660	13-14,1668-1667[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAGAAGAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2648_c0_g1_1671_TPlot.pdf
TRINITY_DN2648_c0_g1:2219	si_a53	TRINITY_DN2648_c0_g1	2209	2228	2219	-39.00	-27.90	0.715384615384615	4.5	1-8,2228-2221;10-10,2219-2219;12-21,2218-2209	9-9,2220-2220[SIL];11-11,x-x[BULq]	((((((((((-(.((((((((&)))))))).).))))))))))	AAGAAGUGAG-CAACUCCUAG&CUAGGAGUCGACUCGCUUCUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN2648_c0_g1_2219_TPlot.pdf
TRINITY_DN2648_c0_g1:5106	si_s74	TRINITY_DN2648_c0_g1	5095	5115	5106	-25.00	-17.20	0.688	9	4-20,5112-5096	1-3,5115-5113[UP5];21-21,5095-5095[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAAGGAAAGGGAAAAAGGAC&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2648_c0_g1_5106_TPlot.pdf
TRINITY_DN264_c0_g1:3226	si_a328	TRINITY_DN264_c0_g1	3214	3236	3226	-30.10	-20.90	0.694352159468438	9	1-7,3236-3230;9-11,3227-3225;12-20,3223-3215	8-8,3229-3228[AILt];x-x,3224-3224[BULt];21-21,3214-3214[UP3]	.(((((((((.(((..(((((((&)))))))-.)))-))))))))).	UGGACAAGGAGAUAUUGAAGAUC&GAUUUUU-UUAU-UCCUUGUCCC	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN264_c0_g1_3226_TPlot.pdf
TRINITY_DN2650_c0_g1:1169	si_a141	TRINITY_DN2650_c0_g1	1158	1178	1169	-23.80	-17.00	0.714285714285714	16.5	8-20,1171-1159	1-7,1178-1172[UP5];21-21,1158-1158[UP3]	.(((((((((((((.......&.......))))))))))))).	AGAAGCAGCAGCGACUAUGGA&UAAUUAAUCGUUGUUGUUUUA	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2650_c0_g1_1169_TPlot.pdf
TRINITY_DN2652_c0_g1:316	si_a841	TRINITY_DN2652_c0_g1	304	325	316	-29.20	-19.10	0.654109589041096	6.5	2-12,324-314;13-14,312-311;16-21,309-304	1-1,325-325[UP5];x-x,313-313[BULt];15-15,310-310[SIL]	((((((.((.(((((((((((.&.)))))))))))-)).))))))	UCAAGUAGGUCGAUUUCUAUUC&AAAUAGAAGUUG-CUAACUUGA	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN2652_c0_g1_316_TPlot.pdf
TRINITY_DN26534_c0_g1:158	si_s563	TRINITY_DN26534_c0_g1	147	167	158	-30.80	-21.20	0.688311688311688	7	2-8,166-160;11-20,157-148	1-1,167-167[UP5];9-10,159-158[SIL];21-21,147-147[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	CUUCCUUGUCCAUAAAGUAUA&AAUAUUUUCGGGACAAGGAAU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN26534_c0_g1_158_TPlot.pdf
TRINITY_DN26534_c0_g2:48	si_s124	TRINITY_DN26534_c0_g2	33	57	48	-27.10	-18.26	0.67380073800738	13.5	2-12,56-46;15-20,39-34	1-1,57-57[UP5];13-14,45-40[AILt];21-21,33-33[UP3]	.((((((......(((((((((((.&.)))))))))))----..)))))).	CUGGUUCUGAGAUCUCUUCUGUUUG&AAAAUAGAAGAG----UUGAAUCAA	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN26534_c0_g2_48_TPlot.pdf
TRINITY_DN2653_c0_g1:589	si_s88	TRINITY_DN2653_c0_g1	578	599	589	-34.80	-23.70	0.681034482758621	9.5	1-6,599-594;9-20,590-579	7-8,593-591[AILt];21-21,578-578[UP3]	.((((((((((((...((((((&))))))-..)))))))))))).	UAGGCGAAGAAGAUUUGAGGGA&UCCUUU-CUUCUUCUUCGCUUC	4	0.999999999995797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2653_c0_g1_589_TPlot.pdf
TRINITY_DN2653_c0_g1:590	si_s87	TRINITY_DN2653_c0_g1	579	599	590	-32.90	-24.68	0.750151975683891	8.5	1-6,599-594;10-21,590-579	7-9,593-591[SIL]	((((((((((((...((((((&))))))...))))))))))))	AGGCGAAGAAGAUUUGAGGGA&UUCCUUUCUUCUUCUUCGCUU	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2653_c0_g1_590_TPlot.pdf
TRINITY_DN2653_c0_g1:591	si_s86	TRINITY_DN2653_c0_g1	580	600	591	-32.90	-24.28	0.737993920972644	9.5	2-7,599-594;11-21,590-580	1-1,600-600[UP5];8-10,593-591[SIL]	(((((((((((...((((((.&.))))))...)))))))))))	GGCGAAGAAGAUUUGAGGGAU&UUUCCUUUCUUCUUCUUCGCU	2	0.998333984614128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2653_c0_g1_591_TPlot.pdf
TRINITY_DN2653_c0_g1:592	si_s85	TRINITY_DN2653_c0_g1	581	601	592	-33.80	-23.18	0.685798816568047	11	3-8,599-594;12-21,590-581	1-2,601-600[UP5];9-11,593-591[SIL]	((((((((((...((((((..&..))))))...))))))))))	GCGAAGAAGAUUUGAGGGAUU&CUUUCCUUUCUUCUUCUUCGC	4	0.999999999992958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2653_c0_g1_592_TPlot.pdf
TRINITY_DN2653_c0_g2:1091	si_a691	TRINITY_DN2653_c0_g2	1079	1105	1091	-36.20	-24.00	0.662983425414365	15.5	1-8,1105-1098;11-15,1090-1086;16-21,1084-1079	9-10,1097-1091[AILt];x-x,1085-1085[BULt]	((((((.(((((.......((((((((&))))))))-----..)))))-))))))	GUGCCAUGUUGUAAAGCAGUCGAAACC&GGUUUCGA-----ACACAAC-UGGUAC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a691_TRINITY_DN2653_c0_g2_1091_TPlot.pdf
TRINITY_DN2654_c0_g1:4066	si_s428	TRINITY_DN2654_c0_g1	4055	4075	4066	-21.50	-15.70	0.730232558139535	6.5	1-10,4075-4066;12-18,4064-4058	11-11,4065-4065[SIL];19-21,4057-4055[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	UAUUGUAGUUUUUGUUGUAUA&UAUAUAACAAUAAUUACAUAU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN2654_c0_g1_4066_TPlot.pdf
TRINITY_DN2654_c0_g1:4068	si_s426	TRINITY_DN2654_c0_g1	4057	4077	4068	-23.60	-15.90	0.673728813559322	6.5	3-12,4075-4066;14-20,4064-4058	1-2,4077-4076[UP5];13-13,4065-4065[SIL];21-21,4057-4057[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	UUGUAGUUUUUGUUGUAUAAA&UCUAUAUAACAAUAAUUACAU	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN2654_c0_g1_4068_TPlot.pdf
TRINITY_DN2654_c0_g1:4258	si_s76	TRINITY_DN2654_c0_g1	4245	4267	4258	-23.60	-16.00	0.677966101694915	7	2-14,4266-4254;15-20,4251-4246	1-1,4267-4267[UP5];x-x,4253-4252[BULt];21-21,4245-4245[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	UAGAAAGCUGAAAGGAAAAGGAA&AUUUUUUUUCUUUC--CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2654_c0_g1_4258_TPlot.pdf
TRINITY_DN2654_c0_g1:4259	si_s75	TRINITY_DN2654_c0_g1	4246	4268	4259	-24.00	-16.00	0.666666666666667	8	3-15,4266-4254;16-21,4251-4246	1-2,4268-4267[UP5];x-x,4253-4252[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AGAAAGCUGAAAGGAAAAGGAAU&UAUUUUUUUUCUUUC--CUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2654_c0_g1_4259_TPlot.pdf
TRINITY_DN26554_c0_g1:1801	si_a406	TRINITY_DN26554_c0_g1	1788	1810	1801	-19.80	-13.30	0.671717171717172	8	2-11,1809-1800;12-20,1797-1789	1-1,1810-1810[UP5];x-x,1799-1798[BULt];21-21,1788-1788[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	CUUAAAUAUAGUGACAAAAUAAG&AUUGUUUUGUU--UAUAUUUAAA	2	0.999999999998434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN26554_c0_g1_1801_TPlot.pdf
TRINITY_DN26554_c0_g1:1811	si_a396	TRINITY_DN26554_c0_g1	1800	1819	1811	-24.70	-17.30	0.700404858299595	7	2-9,1818-1811;12-21,1809-1800	1-1,1819-1819[UP5];10-11,1810-1810[AILq]	((((((((((.-((((((((.&.))))))))..))))))))))	GACAAAAUAAG-CUAUGUUCA&AGAAUAUAGAAUUGUUUUGUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN26554_c0_g1_1811_TPlot.pdf
TRINITY_DN26554_c0_g1:1977	si_a17	TRINITY_DN26554_c0_g1	1964	1986	1977	-24.30	-16.20	0.666666666666667	13.5	4-10,1983-1977;11-20,1974-1965	1-3,1986-1984[UP5];x-x,1976-1975[BULt];21-21,1964-1964[UP3]	.((((((((((..(((((((...&...)))))))--)))))))))).	UACUGAAGGUAGCAGUGGGCCAG&AAAGCCUAUU--UAUUUUUAGUU	4	0.999999962234629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN26554_c0_g1_1977_TPlot.pdf
TRINITY_DN26563_c0_g2:14	si_a899	TRINITY_DN26563_c0_g2	3	23	14	-18.70	-13.10	0.700534759358289	12.5	6-19,18-5	1-5,23-19[UP5];20-21,4-3[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAUUUGUAUUGCUUAUAACGU&UAAUAAUAAGUAAUAUAAAAA	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN26563_c0_g2_14_TPlot.pdf
TRINITY_DN26564_c0_g1:552	si_a363	TRINITY_DN26564_c0_g1	541	561	552	-26.40	-18.40	0.696969696969697	14.5	7-18,555-544	1-6,561-556[UP5];19-21,543-541[UP3]	...((((((((((((......&......))))))))))))...	UUCUUUGGUCCGAUCUACCCA&UAUUUUGAUCGGAUCAAAAAU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN26564_c0_g1_552_TPlot.pdf
TRINITY_DN2658_c1_g1:1005	si_a126	TRINITY_DN2658_c1_g1	994	1015	1005	-24.70	-16.80	0.680161943319838	8.5	1-6,1015-1010;7-17,1008-998	x-x,1009-1009[BULt];18-21,997-994[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UUUAUAUUAUUGCUAUUGAGAC&GUUUUA-UAGCAAUAGUAAUUA	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN2658_c1_g1_1005_TPlot.pdf
TRINITY_DN2658_c1_g1:1006	si_a125	TRINITY_DN2658_c1_g1	995	1016	1006	-25.00	-16.90	0.676	8.5	2-7,1015-1010;8-18,1008-998	1-1,1016-1016[UP5];x-x,1009-1009[BULt];19-21,997-995[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	UUAUAUUAUUGCUAUUGAGACG&UGUUUUA-UAGCAAUAGUAAUU	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN2658_c1_g1_1006_TPlot.pdf
TRINITY_DN2658_c1_g1:1007	si_a124	TRINITY_DN2658_c1_g1	996	1017	1007	-25.10	-17.00	0.677290836653386	8.5	2-8,1016-1010;9-19,1008-998	1-1,1017-1017[UP5];x-x,1009-1009[BULt];20-21,997-996[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	UAUAUUAUUGCUAUUGAGACGC&UUGUUUUA-UAGCAAUAGUAAU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN2658_c1_g1_1007_TPlot.pdf
TRINITY_DN2658_c1_g1:1008	si_a123	TRINITY_DN2658_c1_g1	997	1019	1008	-26.60	-17.50	0.657894736842105	8.5	1-2,1019-1018;3-9,1016-1010;10-20,1008-998	x-x,1017-1017[BULt];x-x,1009-1009[BULt];21-21,997-997[UP3]	.(((((((((((.(((((((.((&))-)))))))-))))))))))).	AUAUUAUUGCUAUUGAGACGCAG&CU-UGUUUUA-UAGCAAUAGUAA	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN2658_c1_g1_1008_TPlot.pdf
TRINITY_DN2660_c0_g1:384	si_a412	TRINITY_DN2660_c0_g1	373	393	384	-18.30	-14.20	0.775956284153005	9.5	1-16,393-378	17-21,377-373[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGCAGGUUUAGGUGUAAACGA&UUGUUUAUAUUUAAAUAAAUA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2660_c0_g1_384_TPlot.pdf
TRINITY_DN2662_c0_g1:872	si_a844	TRINITY_DN2662_c0_g1	861	881	872	-29.20	-19.20	0.657534246575342	9	1-11,881-871;14-19,868-863	12-13,870-869[SIL];20-21,862-861[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	UAUUCGAGGUGGUAAUUUCUG&UAGAAGUUGCUAACUUGAAAU	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN2662_c0_g1_872_TPlot.pdf
TRINITY_DN26631_c0_g2:1130	si_s213	TRINITY_DN26631_c0_g2	1120	1142	1130	-37.10	-24.20	0.652291105121294	10	1-6,1142-1137;7-10,1133-1130;12-21,1129-1120	x-x,1136-1134[BULt];11-11,x-x[BULq]	((((((((((-((((...((((((&))))))---)))).))))))))))	ACGCGGUUUC-AAUAAAUCAGCUG&CAGUUG---UGUUCGAAACCGCGU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s213_TRINITY_DN26631_c0_g2_1130_TPlot.pdf
TRINITY_DN26631_c1_g1:1921	si_a50	TRINITY_DN26631_c1_g1	1909	1930	1921	-41.50	-30.50	0.734939759036145	8	2-6,1929-1925;8-15,1923-1916;16-21,1914-1909	1-1,1930-1930[UP5];7-7,1924-1924[SIL];x-x,1915-1915[BULt]	((((((.((((((((.(((((.&.))))).))))))))-))))))	GAGCGGUGUCGGCUCGUGGGCG&GGUCUAGGAGUCGAC-UCGCUU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN26631_c1_g1_1921_TPlot.pdf
TRINITY_DN26631_c1_g1:2107	si_a17	TRINITY_DN26631_c1_g1	2096	2117	2107	-24.30	-16.50	0.679012345679012	12.5	1-8,2117-2110;13-21,2104-2096	9-12,2109-2105[AILt]	(((((((((.....((((((((&))))))))-....)))))))))	GACUGAAAGAGUGUUGGGCUUU&AAAGCCUA-UUUAUUUUUAGUU	2	0.999657069035875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN26631_c1_g1_2107_TPlot.pdf
TRINITY_DN2663_c0_g1:1489	si_a760	TRINITY_DN2663_c0_g1	1478	1497	1489	-31.10	-23.00	0.739549839228296	6	1-5,1497-1493;7-7,1492-1492;9-21,1490-1478	6-6,x-x[BULq];8-8,1491-1491[SIL]	(((((((((((((.(-(((((&))))).).)))))))))))))	GUCAGUCGGAAACGC-AAGGA&UCCUUUGGGUUUUUGAUUGAU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2663_c0_g1_1489_TPlot.pdf
TRINITY_DN2663_c0_g1:2201	si_s697	TRINITY_DN2663_c0_g1	2189	2210	2201	-26.90	-18.70	0.695167286245353	8.5	3-13,2208-2198;14-19,2196-2191	1-2,2210-2209[UP5];x-x,2197-2197[BULt];20-21,2190-2189[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	CGGCUGAUCGAGUCGACUAAGA&AAUUAGUCGAUUU-AUUAGUGA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN2663_c0_g1_2201_TPlot.pdf
TRINITY_DN2663_c0_g1:2202	si_s696	TRINITY_DN2663_c0_g1	2190	2211	2202	-26.30	-18.70	0.711026615969582	9.5	4-14,2208-2198;15-20,2196-2191	1-3,2211-2209[UP5];x-x,2197-2197[BULt];21-21,2190-2190[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	GGCUGAUCGAGUCGACUAAGAU&UAAUUAGUCGAUUU-AUUAGUG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN2663_c0_g1_2202_TPlot.pdf
TRINITY_DN2663_c0_g1:2203	si_s695	TRINITY_DN2663_c0_g1	2191	2212	2203	-24.70	-18.60	0.753036437246964	10	5-15,2208-2198;16-21,2196-2191	1-4,2212-2209[UP5];x-x,2197-2197[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GCUGAUCGAGUCGACUAAGAUC&UUAAUUAGUCGAUUU-AUUAGU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN2663_c0_g1_2203_TPlot.pdf
TRINITY_DN2664_c0_g1:1134	si_a24	TRINITY_DN2664_c0_g1	1123	1146	1134	-24.20	-17.30	0.714876033057851	10	1-9,1146-1138;10-21,1134-1123	x-x,1137-1135[BULt]	((((((((((((...(((((((((&)))))))))---))))))))))))	GUUUUAGGACUAUUAAGAAUAGGU&AUUUAUUUU---UAGUUCUAAGAC	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN2664_c0_g1_1134_TPlot.pdf
TRINITY_DN2664_c0_g1:1137	si_a21	TRINITY_DN2664_c0_g1	1126	1145	1137	-24.30	-16.40	0.674897119341564	7.5	1-7,1145-1139;9-10,1138-1137;13-21,1134-1126	8-8,x-x[BULq];11-12,1136-1135[SIL]	(((((((((..((-(((((((&))))))).))..)))))))))	UUAGGACUAUUAA-GAAUAGG&CCUAUUUAUUUUUAGUUCUAA	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN2664_c0_g1_1137_TPlot.pdf
TRINITY_DN2664_c0_g1:1485	si_a193	TRINITY_DN2664_c0_g1	1474	1495	1485	-30.90	-20.40	0.660194174757282	9	1-4,1495-1492;5-15,1490-1480	x-x,1491-1491[BULt];16-21,1479-1474[UP3]	......(((((((((((.((((&))))-)))))))))))......	UUUAAAAGUGAAUAGGGUAAAG&CUUU-CCCUGUUCACUAAUAAA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN2664_c0_g1_1485_TPlot.pdf
TRINITY_DN2664_c0_g1:461	si_a352	TRINITY_DN2664_c0_g1	450	470	461	-22.50	-16.70	0.742222222222222	7.5	1-8,470-463;11-20,460-451	9-10,462-461[SIL];21-21,450-450[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	AGUCAAAAUGGUUUUAGUAUU&AAUAUUAAUUCUAUUUUGAUC	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN2664_c0_g1_461_TPlot.pdf
TRINITY_DN2664_c0_g1:462	si_a351	TRINITY_DN2664_c0_g1	451	471	462	-20.50	-16.70	0.814634146341463	7	2-9,470-463;12-21,460-451	1-1,471-471[UP5];10-11,462-461[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	GUCAAAAUGGUUUUAGUAUUA&AAAUAUUAAUUCUAUUUUGAU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2664_c0_g1_462_TPlot.pdf
TRINITY_DN2664_c0_g1:684	si_a87	TRINITY_DN2664_c0_g1	672	693	684	-27.10	-18.50	0.682656826568266	11	1-10,693-684;15-20,678-673	11-14,683-679[AILt];21-21,672-672[UP3]	.((((((.....((((((((((&))))))))))-....)))))).	UGUUACCACCUGCUUGAUAGUG&CAUUAUUAAG-AAAAGGUAACG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a87_TRINITY_DN2664_c0_g1_684_TPlot.pdf
TRINITY_DN2664_c0_g1:685	si_a86	TRINITY_DN2664_c0_g1	673	694	685	-26.60	-18.00	0.676691729323308	9.5	1-11,694-684;16-21,678-673	12-15,683-679[AILt]	((((((.....(((((((((((&)))))))))))-....))))))	GUUACCACCUGCUUGAUAGUGG&UCAUUAUUAAG-AAAAGGUAAC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN2664_c0_g1_685_TPlot.pdf
TRINITY_DN2666_c0_g1:1414	si_a303	TRINITY_DN2666_c0_g1	1403	1423	1414	-28.40	-18.60	0.654929577464789	15	5-15,1419-1409	1-4,1423-1420[UP5];16-21,1408-1403[UP3]	......(((((((((((....&....)))))))))))......	AGCGGACCAGGCGGAUCGAUC&AAAAGAUUCGCUUGGAUUUAU	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN2666_c0_g1_1414_TPlot.pdf
TRINITY_DN2666_c0_g1:1415	si_a302	TRINITY_DN2666_c0_g1	1404	1424	1415	-28.20	-18.60	0.659574468085106	15.5	6-16,1419-1409	1-5,1424-1420[UP5];17-21,1408-1404[UP3]	.....(((((((((((.....&.....))))))))))).....	GCGGACCAGGCGGAUCGAUCC&AAAAAGAUUCGCUUGGAUUUA	4	0.999996457062207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN2666_c0_g1_1415_TPlot.pdf
TRINITY_DN2666_c0_g1:2860	si_s636	TRINITY_DN2666_c0_g1	2843	2869	2860	-40.80	-26.64	0.652941176470588	19	1-12,2869-2858;15-19,2849-2845	13-14,2857-2850[AILt];20-21,2844-2843[UP3]	..(((((........((((((((((((&))))))))))))------..)))))..	CGGAGGGACUGACCCAGCGCCUGCGGA&UUCGUAGGCGUU------UGCCCUCGA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN2666_c0_g1_2860_TPlot.pdf
TRINITY_DN2666_c0_g1:2862	si_s634	TRINITY_DN2666_c0_g1	2845	2871	2862	-38.30	-26.94	0.703394255874674	12	1-14,2871-2858;17-21,2849-2845	15-16,2857-2850[AILt]	(((((........((((((((((((((&))))))))))))))------..)))))	GAGGGACUGACCCAGCGCCUGCGGAGG&UUUUCGUAGGCGUU------UGCCCUC	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN2666_c0_g1_2862_TPlot.pdf
TRINITY_DN2666_c0_g1:2868	si_s627	TRINITY_DN2666_c0_g1	2858	2876	2868	-36.10	-25.00	0.692520775623269	10	2-3,2875-2874;5-9,2872-2868;12-21,2867-2858	1-1,2876-2876[UP5];4-4,2873-2873[SIL];10-11,x-x[BULq]	((((((((((--(((((.((.&.)).)))))..))))))))))	AGCGCCUGCG--GAGGUGGCC&AGCGAUCUUUUCGUAGGCGUU	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN2666_c0_g1_2868_TPlot.pdf
TRINITY_DN2666_c0_g1:3109	si_s312	TRINITY_DN2666_c0_g1	3097	3118	3109	-29.00	-19.70	0.679310344827586	13.5	5-11,3114-3108;12-20,3106-3098	1-4,3118-3115[UP5];x-x,3107-3107[BULt];21-21,3097-3097[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	CGGCGGGAGGAGACAGAGGAGA&AAAAUUCUGUC-CUUCUUGUUA	4	0.999999949580118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2666_c0_g1_3109_TPlot.pdf
TRINITY_DN2666_c0_g1:695	si_a493	TRINITY_DN2666_c0_g1	684	704	695	-29.50	-19.70	0.667796610169492	8	1-4,704-701;6-7,699-698;10-21,695-684	5-5,700-700[SIL];8-9,697-696[SIL]	((((((((((((..((.((((&)))).))..))))))))))))	AAGGCGAAGAACUUCAAGUUC&GAAUAUGUCGUUUUUCGUCUU	4	0.999994185394833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN2666_c0_g1_695_TPlot.pdf
TRINITY_DN2666_c0_g1:801	si_a236	TRINITY_DN2666_c0_g1	790	810	801	-35.00	-23.80	0.68	8	1-4,810-807;7-8,804-803;10-14,801-797;16-21,795-790	5-6,806-805[SIL];9-9,802-802[SIL];15-15,796-796[SIL]	((((((.(((((.((..((((&))))..)).))))).))))))	GGGGGAACGAAUGGAGGAUGG&CUAUAAUCAAUUCGAUCCCCC	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN2666_c0_g1_801_TPlot.pdf
TRINITY_DN2666_c0_g1:802	si_a235	TRINITY_DN2666_c0_g1	791	811	802	-33.60	-22.30	0.663690476190476	8	1-5,811-807;8-9,804-803;11-15,801-797;17-21,795-791	6-7,806-805[SIL];10-10,802-802[SIL];16-16,796-796[SIL]	(((((.(((((.((..(((((&)))))..)).))))).)))))	GGGGAACGAAUGGAGGAUGGA&UCUAUAAUCAAUUCGAUCCCC	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a235_TRINITY_DN2666_c0_g1_802_TPlot.pdf
TRINITY_DN2666_c0_g1:804	si_s71	TRINITY_DN2666_c0_g1	792	813	804	-25.70	-18.30	0.712062256809339	9.5	1-12,813-802;13-15,800-798;17-21,796-792	x-x,801-801[BULt];16-16,797-797[SIL]	(((((.(((.((((((((((((&))))))))))))-))).)))))	GGGAACGAAUGGAGGAUGGAGG&CUUCUAUUUUUU-UUCUUUCCU	3	0.999999999999825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2666_c0_g1_804_TPlot.pdf
TRINITY_DN2666_c0_g1:809	si_a790	TRINITY_DN2666_c0_g1	798	818	809	-25.80	-17.60	0.682170542635659	9	1-2,818-817;5-18,814-801;20-21,799-798	3-4,816-815[SIL];19-19,800-800[SIL]	((.((((((((((((((..((&))..)))))))))))))).))	GAAUGGAGGAUGGAGGACAAG&CUAUUUUUCUAUUUUCCAAUC	3	0.999944438983975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN2666_c0_g1_809_TPlot.pdf
TRINITY_DN2666_c0_g1:810	si_a789	TRINITY_DN2666_c0_g1	799	819	810	-24.80	-16.40	0.661290322580645	11	2-3,818-817;6-19,814-801	1-1,819-819[UP5];4-5,816-815[SIL];20-21,800-799[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	AAUGGAGGAUGGAGGACAAGG&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999999518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN2666_c0_g1_810_TPlot.pdf
TRINITY_DN2666_c0_g1:811	si_a788	TRINITY_DN2666_c0_g1	800	820	811	-24.80	-18.00	0.725806451612903	10	1-4,820-817;7-20,814-801	5-6,816-815[SIL];21-21,800-800[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AUGGAGGAUGGAGGACAAGGA&UUCUAUUUUUCUAUUUUCCAA	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2666_c0_g1_811_TPlot.pdf
TRINITY_DN2666_c0_g1:813	si_a786	TRINITY_DN2666_c0_g1	802	822	813	-26.60	-18.70	0.703007518796992	9.5	2-6,821-817;9-21,814-802	1-1,822-822[UP5];7-8,816-815[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	GGAGGAUGGAGGACAAGGAGC&UCUUCUAUUUUUCUAUUUUCC	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2666_c0_g1_813_TPlot.pdf
TRINITY_DN2666_c0_g1:867	si_a498	TRINITY_DN2666_c0_g1	854	876	867	-33.50	-23.20	0.692537313432836	7.5	2-12,875-865;14-16,863-861;17-21,858-854	1-1,876-876[UP5];13-13,864-864[SIL];x-x,860-859[BULt]	(((((..(((.(((((((((((.&.))))))))))).)))--)))))	CGAGGUCAAGUCGGAGAACGGCU&UGUCGUUUUUCGUCUU--CCUUG	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2666_c0_g1_867_TPlot.pdf
TRINITY_DN2666_c0_g1:868	si_a497	TRINITY_DN2666_c0_g1	855	877	868	-32.00	-20.80	0.65	9.5	3-13,875-865;15-17,863-861;18-21,858-855	1-2,877-876[UP5];14-14,864-864[SIL];x-x,860-859[BULt]	((((..(((.(((((((((((..&..))))))))))).)))--))))	GAGGUCAAGUCGGAGAACGGCUU&AUGUCGUUUUUCGUCUU--CCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2666_c0_g1_868_TPlot.pdf
TRINITY_DN26672_c0_g1:363	si_a119	TRINITY_DN26672_c0_g1	352	381	363	-30.30	-19.90	0.656765676567657	23	1-5,381-377;6-17,367-356	x-x,376-368[BULt];18-21,355-352[UP3]	....((((((((((((.........(((((&)))))---------))))))))))))....	AAAAGCUAUGAAACAAAAAGCAUUCGCUCG&CGAGC---------UUGUUUUAUAGCAAUA	3	0.999944438983975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN26672_c0_g1_363_TPlot.pdf
TRINITY_DN26672_c0_g1:544	si_a149	TRINITY_DN26672_c0_g1	533	553	544	-29.40	-19.80	0.673469387755102	10.5	1-12,553-542;14-18,540-536	13-13,541-541[SIL];19-21,535-533[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AAAGACUUGGGAGCAGCGAUG&CGUUGUUGUUUUAAGGUCAAU	3	0.999995836868361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN26672_c0_g1_544_TPlot.pdf
TRINITY_DN26672_c0_g1:546	si_a147	TRINITY_DN26672_c0_g1	535	555	546	-30.40	-20.00	0.657894736842105	9.5	2-14,554-542;16-20,540-536	1-1,555-555[UP5];15-15,541-541[SIL];21-21,535-535[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	AGACUUGGGAGCAGCGAUGGG&AUCGUUGUUGUUUUAAGGUCA	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN26672_c0_g1_546_TPlot.pdf
TRINITY_DN2667_c2_g1:4560	si_a313	TRINITY_DN2667_c2_g1	4549	4568	4560	-28.70	-20.90	0.728222996515679	8.5	1-5,4568-4564;7-18,4563-4552	6-6,x-x[BULq];19-21,4551-4549[UP3]	...((((((((((((-(((((&))))).))))))))))))...	UAUAUCGUGGGUAGA-CCGAG&CUUGGAUUUAUCCAUGAUUUU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN2667_c2_g1_4560_TPlot.pdf
TRINITY_DN2667_c2_g1:4718	si_s899	TRINITY_DN2667_c2_g1	4708	4728	4718	-28.30	-18.40	0.65017667844523	7	1-4,4728-4725;5-11,4723-4717;14-21,4715-4708	x-x,4724-4724[BULt];12-13,4716-4716[AILq]	((((((((.-(((((((.((((&))))-)))))))..))))))))	AAUUGAAGG-GAAGAGAGGAGU&GCUU-UCUCUUCAAUUUCAAUU	3	0.999999999998092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2667_c2_g1_4718_TPlot.pdf
TRINITY_DN2667_c2_g1:4721	si_s74	TRINITY_DN2667_c2_g1	4711	4730	4721	-25.00	-19.00	0.76	8	1-10,4730-4721;12-20,4720-4712	11-11,x-x[BULq];21-21,4711-4711[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	UGAAGGGAAG-AGAGGAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2667_c2_g1_4721_TPlot.pdf
TRINITY_DN2667_c2_g1:4727	si_s78	TRINITY_DN2667_c2_g1	4716	4737	4727	-26.20	-18.90	0.721374045801527	14	6-9,4732-4729;10-21,4727-4716	1-5,4737-4733[UP5];x-x,4728-4728[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	GGAAGAGAGGAGUAGGACGUAA&UUUUUUUCU-UUCCUUUCUUCU	2	0.999999999991489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2667_c2_g1_4727_TPlot.pdf
TRINITY_DN2667_c3_g1:85	si_a71	TRINITY_DN2667_c3_g1	70	94	85	-23.30	-16.30	0.699570815450644	9.5	1-13,94-82;14-18,77-73	x-x,81-78[BULt];19-21,72-70[UP3]	...(((((....(((((((((((((&)))))))))))))----)))))...	CACUGAAACGGUGACGAUUUGGAAG&CUUUCAAAUUGUU----UUUCAUUA	3	0.99999698871827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN2667_c3_g1_85_TPlot.pdf
TRINITY_DN266_c0_g1:2433	si_a80	TRINITY_DN266_c0_g1	2422	2442	2433	-22.10	-14.60	0.660633484162896	7.5	1-14,2442-2429	15-21,2428-2422[UP3]	.......((((((((((((((&)))))))))))))).......	AGCUAGCGAUAAUGAAAAACA&UGUUUUUCAUUAUUAAGAAAA	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN266_c0_g1_2433_TPlot.pdf
TRINITY_DN266_c0_g1:2435	si_a78	TRINITY_DN266_c0_g1	2424	2444	2435	-22.30	-15.00	0.672645739910314	7.5	2-16,2443-2429	1-1,2444-2444[UP5];17-21,2428-2424[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUAGCGAUAAUGAAAAACAGG&AUUGUUUUUCAUUAUUAAGAA	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN266_c0_g1_2435_TPlot.pdf
TRINITY_DN266_c0_g1:2436	si_a77	TRINITY_DN266_c0_g1	2425	2445	2436	-22.20	-15.00	0.675675675675676	8.5	3-17,2443-2429	1-2,2445-2444[UP5];18-21,2428-2425[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAGCGAUAAUGAAAAACAGGG&AAUUGUUUUUCAUUAUUAAGA	3	0.999997821875828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN266_c0_g1_2436_TPlot.pdf
TRINITY_DN266_c0_g1:2437	si_a76	TRINITY_DN266_c0_g1	2426	2446	2437	-21.20	-15.00	0.707547169811321	9.5	4-18,2443-2429	1-3,2446-2444[UP5];19-21,2428-2426[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGCGAUAAUGAAAAACAGGGA&AAAUUGUUUUUCAUUAUUAAG	3	0.999947712872037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN266_c0_g1_2437_TPlot.pdf
TRINITY_DN266_c0_g1:2439	si_a74	TRINITY_DN266_c0_g1	2428	2448	2439	-22.20	-15.00	0.675675675675676	11.5	6-20,2443-2429	1-5,2448-2444[UP5];21-21,2428-2428[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGAUAAUGAAAAACAGGGAAC&UCAAAUUGUUUUUCAUUAUUA	3	0.999999982395045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN266_c0_g1_2439_TPlot.pdf
TRINITY_DN266_c0_g1:2440	si_a73	TRINITY_DN266_c0_g1	2429	2449	2440	-21.90	-14.80	0.675799086757991	12.5	7-21,2443-2429	1-6,2449-2444[UP5]	(((((((((((((((......&......)))))))))))))))	GAUAAUGAAAAACAGGGAACC&UUCAAAUUGUUUUUCAUUAUU	2	0.999997082712771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN266_c0_g1_2440_TPlot.pdf
TRINITY_DN26703_c0_g1:3184	si_a404	TRINITY_DN26703_c0_g1	3173	3194	3184	-21.70	-14.50	0.668202764976959	7.5	1-9,3194-3186;12-21,3182-3173	10-11,3185-3183[AILt]	((((((((((...(((((((((&)))))))))-..))))))))))	UAGAUAUAAAAAUAAACAGUUC&GAAUUGUUU-UGUUUAUAUUUA	2	0.99999999930268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN26703_c0_g1_3184_TPlot.pdf
TRINITY_DN26713_c0_g1:284	si_a680	TRINITY_DN26713_c0_g1	273	292	284	-34.70	-26.40	0.760806916426513	6.5	1-7,292-286;9-21,285-273	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	GUUUGAGGCUGCG-GAGUAGG&CUUAUUCACGCGGUUUCGAAC	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a680_TRINITY_DN26713_c0_g1_284_TPlot.pdf
TRINITY_DN26718_c0_g2:85	si_a675	TRINITY_DN26718_c0_g2	71	95	85	-34.00	-23.00	0.676470588235294	15	1-5,95-91;6-10,89-85;11-18,81-74	x-x,90-90[BULt];x-x,84-82[BULt];19-21,73-71[UP3]	...((((((((...(((((.(((((&)))))-)))))---))))))))...	UUCCCGCGUGAAAUGUGGGAGAGUC&GAUUC-CUUAU---UCACGCGGUUU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN26718_c0_g2_85_TPlot.pdf
TRINITY_DN26718_c0_g2:86	si_a674	TRINITY_DN26718_c0_g2	72	96	86	-34.70	-23.00	0.662824207492795	15	2-6,95-91;7-11,89-85;12-19,81-74	1-1,96-96[UP5];x-x,90-90[BULt];x-x,84-82[BULt];20-21,73-72[UP3]	..((((((((...(((((.(((((.&.)))))-)))))---))))))))..	UCCCGCGUGAAAUGUGGGAGAGUCC&UGAUUC-CUUAU---UCACGCGGUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN26718_c0_g2_86_TPlot.pdf
TRINITY_DN2671_c0_g1:795	si_a784	TRINITY_DN2671_c0_g1	785	804	795	-24.70	-19.70	0.797570850202429	4	1-15,804-790;17-20,789-786	16-16,x-x[BULq];21-21,785-785[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	UGGAU-GAAAAAUGGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2671_c0_g1_795_TPlot.pdf
TRINITY_DN2671_c0_g1:798	si_a781	TRINITY_DN2671_c0_g1	787	807	798	-27.40	-19.90	0.726277372262774	9	4-18,804-790	1-3,807-805[UP5];19-21,789-787[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAUGAAAAAUGGAAGAGUAGC&UCAACUCUUCUAUUUUUCUAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN2671_c0_g1_798_TPlot.pdf
TRINITY_DN2671_c0_g1:799	si_a780	TRINITY_DN2671_c0_g1	788	808	799	-27.30	-19.90	0.728937728937729	10	5-19,804-790	1-4,808-805[UP5];20-21,789-788[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUGAAAAAUGGAAGAGUAGCA&UUCAACUCUUCUAUUUUUCUA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN2671_c0_g1_799_TPlot.pdf
TRINITY_DN2671_c0_g1:800	si_a779	TRINITY_DN2671_c0_g1	789	809	800	-27.00	-19.90	0.737037037037037	10.5	6-20,804-790	1-5,809-805[UP5];21-21,789-789[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAAAAAUGGAAGAGUAGCAU&AUUCAACUCUUCUAUUUUUCU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN2671_c0_g1_800_TPlot.pdf
TRINITY_DN2671_c0_g1:802	si_a777	TRINITY_DN2671_c0_g1	791	811	802	-27.00	-19.50	0.722222222222222	4.5	1-4,811-808;6-6,806-806;8-21,804-791	5-5,807-807[SIL];7-7,805-805[SIL]	((((((((((((((.(.((((&)))).).))))))))))))))	AAAAAUGGAAGAGUAGCAUCA&UGAUUCAACUCUUCUAUUUUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN2671_c0_g1_802_TPlot.pdf
TRINITY_DN2671_c0_g1:803	si_a776	TRINITY_DN2671_c0_g1	792	812	803	-27.10	-18.80	0.693726937269373	5.5	2-5,811-808;7-7,806-806;9-21,804-792	1-1,812-812[UP5];6-6,807-807[SIL];8-8,805-805[SIL]	(((((((((((((.(.((((.&.)))).).)))))))))))))	AAAAUGGAAGAGUAGCAUCAG&UUGAUUCAACUCUUCUAUUUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN2671_c0_g1_803_TPlot.pdf
TRINITY_DN2673_c0_g1:137	si_s525	TRINITY_DN2673_c0_g1	126	146	137	-24.00	-16.60	0.691666666666667	6	1-13,146-134;15-19,132-128	14-14,133-133[SIL];20-21,127-126[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AGCAAAAUUGAUUUUGGGUUA&UAAUUCGAAAUCAUUUUUGAU	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN2673_c0_g1_137_TPlot.pdf
TRINITY_DN2673_c0_g1:138	si_s524	TRINITY_DN2673_c0_g1	127	147	138	-23.90	-16.70	0.698744769874477	6	2-14,146-134;16-20,132-128	1-1,147-147[UP5];15-15,133-133[SIL];21-21,127-127[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	GCAAAAUUGAUUUUGGGUUAC&UUAAUUCGAAAUCAUUUUUGA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN2673_c0_g1_138_TPlot.pdf
TRINITY_DN2673_c0_g1:516	si_a787	TRINITY_DN2673_c0_g1	505	525	516	-26.30	-17.80	0.67680608365019	8	1-15,525-511	16-21,510-505[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUCCGUGGAAAAGUAGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999992508	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2673_c0_g1_516_TPlot.pdf
TRINITY_DN2673_c0_g1:517	si_a786	TRINITY_DN2673_c0_g1	506	526	517	-26.60	-18.00	0.676691729323308	7.5	1-16,526-511	17-21,510-506[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUCCGUGGAAAAGUAGAAGG&UCUUCUAUUUUUCUAUUUUCC	4	0.999999999984248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2673_c0_g1_517_TPlot.pdf
TRINITY_DN2673_c0_g1:518	si_a785	TRINITY_DN2673_c0_g1	507	527	518	-25.90	-20.70	0.799227799227799	7	1-17,527-511	18-21,510-507[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUCCGUGGAAAAGUAGAAGGG&CUCUUCUAUUUUUCUAUUUUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2673_c0_g1_518_TPlot.pdf
TRINITY_DN2673_c0_g1:519	si_a784	TRINITY_DN2673_c0_g1	508	528	519	-24.70	-22.20	0.898785425101215	6	1-18,528-511	19-21,510-508[UP3]	...((((((((((((((((((&))))))))))))))))))...	UCCGUGGAAAAGUAGAAGGGU&ACUCUUCUAUUUUUCUAUUUU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2673_c0_g1_519_TPlot.pdf
TRINITY_DN2673_c0_g1:520	si_a783	TRINITY_DN2673_c0_g1	509	529	520	-24.70	-22.40	0.906882591093117	6	2-19,528-511	1-1,529-529[UP5];20-21,510-509[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CCGUGGAAAAGUAGAAGGGUC&AACUCUUCUAUUUUUCUAUUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2673_c0_g1_520_TPlot.pdf
TRINITY_DN2673_c0_g1:521	si_a782	TRINITY_DN2673_c0_g1	510	530	521	-26.40	-22.40	0.848484848484849	7	3-20,528-511	1-2,530-529[UP5];21-21,510-510[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGUGGAAAAGUAGAAGGGUCA&CAACUCUUCUAUUUUUCUAUU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN2673_c0_g1_521_TPlot.pdf
TRINITY_DN2675_c0_g1:681	si_s43	TRINITY_DN2675_c0_g1	670	690	681	-25.50	-16.88	0.661960784313725	7.5	1-5,690-686;9-18,682-673;20-21,671-670	6-8,685-683[SIL];19-19,672-672[SIL]	((.((((((((((...(((((&)))))...)))))))))).))	CUGGAGAUCCAAUGGGUAAAG&CUUUAAUAAUUGGAUUUCAAG	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN2675_c0_g1_681_TPlot.pdf
TRINITY_DN26766_c0_g1:320	si_s803	TRINITY_DN26766_c0_g1	309	328	320	-26.00	-17.90	0.688461538461538	7.5	1-6,328-323;9-21,321-309	7-8,322-322[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	AGAAGGUGGCGAAU-UAAGGU&AUUUUAUCUUCGUUACCUUUU	3	0.999999984721091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN26766_c0_g1_320_TPlot.pdf
TRINITY_DN26766_c0_g1:336	si_a780	TRINITY_DN26766_c0_g1	325	345	336	-27.30	-18.50	0.677655677655678	6	1-12,345-334;14-16,332-330;19-20,327-326	13-13,333-333[SIL];17-18,329-328[SIL];21-21,325-325[UP3]	.((..(((.((((((((((((&)))))))))))).)))..)).	AGGUUGAAAGGAAGAGUUGAA&UUCAACUCUUCUAUUUUUCUA	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN26766_c0_g1_336_TPlot.pdf
TRINITY_DN26766_c0_g1:337	si_a779	TRINITY_DN26766_c0_g1	326	346	337	-27.00	-18.00	0.666666666666667	5.5	2-13,345-334;15-17,332-330;20-21,327-326	1-1,346-346[UP5];14-14,333-333[SIL];18-19,329-328[SIL]	((..(((.((((((((((((.&.)))))))))))).)))..))	GGUUGAAAGGAAGAGUUGAAG&AUUCAACUCUUCUAUUUUUCU	4	0.999998884855311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN26766_c0_g1_337_TPlot.pdf
TRINITY_DN2676_c0_g1:1326	si_a504	TRINITY_DN2676_c0_g1	1315	1335	1326	-32.90	-21.88	0.665045592705167	5	1-15,1335-1321;19-21,1317-1315	16-18,1320-1318[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	ACAAAGUAGGGAAGGCGAAAA&UUUUCGUCUUCCUUGGAAUGU	4	0.999997290929464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN2676_c0_g1_1326_TPlot.pdf
TRINITY_DN2676_c0_g1:1327	si_a503	TRINITY_DN2676_c0_g1	1316	1336	1327	-32.10	-21.28	0.662928348909657	5	1-16,1336-1321;20-21,1317-1316	17-19,1320-1318[SIL]	((...((((((((((((((((&))))))))))))))))...))	CAAAGUAGGGAAGGCGAAAAA&UUUUUCGUCUUCCUUGGAAUG	4	0.999999992294527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN2676_c0_g1_1327_TPlot.pdf
TRINITY_DN2676_c0_g1:1330	si_a500	TRINITY_DN2676_c0_g1	1319	1339	1330	-34.40	-24.60	0.715116279069767	7	3-19,1337-1321	1-2,1339-1338[UP5];20-21,1320-1319[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AGUAGGGAAGGCGAAAAACUU&UCGUUUUUCGUCUUCCUUGGA	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2676_c0_g1_1330_TPlot.pdf
TRINITY_DN2676_c0_g1:1332	si_a498	TRINITY_DN2676_c0_g1	1321	1341	1332	-33.50	-24.40	0.728358208955224	8.5	5-21,1337-1321	1-4,1341-1338[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAGGGAAGGCGAAAAACUUGU&UGUCGUUUUUCGUCUUCCUUG	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2676_c0_g1_1332_TPlot.pdf
TRINITY_DN2676_c0_g1:1347	si_a464	TRINITY_DN2676_c0_g1	1336	1356	1347	-19.60	-13.10	0.668367346938775	7.5	1-8,1356-1349;10-17,1347-1340	9-9,1348-1348[SIL];18-21,1339-1336[UP3]	....((((((((.((((((((&)))))))).))))))))....	ACUUGUUACAUAAUAUGUAUA&UAUAUAUAAUAUGUAAUUAUU	2	0.993530718821175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN2676_c0_g1_1347_TPlot.pdf
TRINITY_DN2676_c0_g1:1348	si_a463	TRINITY_DN2676_c0_g1	1337	1357	1348	-19.70	-13.30	0.6751269035533	7.5	2-9,1356-1349;11-18,1347-1340	1-1,1357-1357[UP5];10-10,1348-1348[SIL];19-21,1339-1337[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	CUUGUUACAUAAUAUGUAUAG&UUAUAUAUAAUAUGUAAUUAU	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN2676_c0_g1_1348_TPlot.pdf
TRINITY_DN2677_c0_g2:3706	si_s64	TRINITY_DN2677_c0_g2	3695	3719	3706	-24.10	-16.16	0.670539419087137	14	2-8,3718-3712;11-21,3705-3695	1-1,3719-3719[UP5];9-10,3711-3706[AILt]	(((((((((((......(((((((.&.)))))))----..)))))))))))	AGAAGAAAUAGUUAAAUGUUGCUAU&UUAGCAAC----UUCUAUUUUUUUU	4	0.999999999739047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2677_c0_g2_3706_TPlot.pdf
TRINITY_DN26782_c0_g1:118	si_s46	TRINITY_DN26782_c0_g1	107	129	118	-25.00	-17.70	0.708	7	1-7,129-123;8-18,120-110	x-x,122-121[BULt];19-21,109-107[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	AGUCUUGAAAUCCAUCAUUAUUA&UAAUAAU--UGGAUUUCAAGUUA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN26782_c0_g1_118_TPlot.pdf
TRINITY_DN26786_c0_g1:1056	si_a67	TRINITY_DN26786_c0_g1	1045	1070	1056	-27.20	-17.68	0.65	18	1-9,1070-1062;13-21,1053-1045	10-12,1061-1054[AILt]	(((((((((........(((((((((&)))))))))-----...)))))))))	GAGAAACAAAAAUACCGGAAAGAGGU&GCUUCUUUC-----AAAUUGUUUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN26786_c0_g1_1056_TPlot.pdf
TRINITY_DN26786_c0_g1:843	si_a350	TRINITY_DN26786_c0_g1	832	852	843	-20.30	-13.20	0.650246305418719	16	8-20,845-833	1-7,852-846[UP5];21-21,832-832[UP3]	.(((((((((((((.......&.......))))))))))))).	CCAGGAUAGAAUUGGAGACGC&AAAAUAUUAAUUCUAUUUUGA	2	0.999907178014106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN26786_c0_g1_843_TPlot.pdf
TRINITY_DN26786_c0_g1:908	si_a26	TRINITY_DN26786_c0_g1	898	917	908	-28.00	-19.60	0.7	7	4-17,914-901;19-20,900-899	1-3,917-915[UP5];18-18,x-x[BULq];21-21,898-898[UP3]	.((-((((((((((((((...&...)))))))))))))).)).	GGG-CUUAGAACUAAAAAAAA&UUAUUUUUAGUUCUAAGACCG	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN26786_c0_g1_908_TPlot.pdf
TRINITY_DN26786_c0_g1:909	si_a25	TRINITY_DN26786_c0_g1	899	918	909	-26.50	-19.00	0.716981132075472	8	5-18,914-901;20-21,900-899	1-4,918-915[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	GG-CUUAGAACUAAAAAAAAA&UUUAUUUUUAGUUCUAAGACC	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN26786_c0_g1_909_TPlot.pdf
TRINITY_DN26786_c0_g1:910	si_a24	TRINITY_DN26786_c0_g1	899	919	910	-24.20	-16.40	0.677685950413223	11	6-19,914-901	1-5,919-915[UP5];20-21,900-899[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGCUUAGAACUAAAAAAAAAA&AUUUAUUUUUAGUUCUAAGAC	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN26786_c0_g1_910_TPlot.pdf
TRINITY_DN26786_c0_g1:911	si_a23	TRINITY_DN26786_c0_g1	900	920	911	-22.80	-16.40	0.719298245614035	12	7-20,914-901	1-6,920-915[UP5];21-21,900-900[UP3]	.((((((((((((((......&......)))))))))))))).	GCUUAGAACUAAAAAAAAAAC&UAUUUAUUUUUAGUUCUAAGA	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN26786_c0_g1_911_TPlot.pdf
TRINITY_DN26786_c0_g1:912	si_a22	TRINITY_DN26786_c0_g1	901	921	912	-23.50	-16.20	0.68936170212766	13	8-21,914-901	1-7,921-915[UP5]	((((((((((((((.......&.......))))))))))))))	CUUAGAACUAAAAAAAAAACA&CUAUUUAUUUUUAGUUCUAAG	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN26786_c0_g1_912_TPlot.pdf
TRINITY_DN2678_c0_g1:470	si_a118	TRINITY_DN2678_c0_g1	459	479	470	-30.70	-20.00	0.651465798045603	9	4-8,476-472;10-19,470-461	1-3,479-477[UP5];9-9,471-471[SIL];20-21,460-459[UP3]	..((((((((((.(((((...&...))))).))))))))))..	AAUGCUAUAAAAGAAGCUAAU&ACGAGCUUGUUUUAUAGCAAU	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN2678_c0_g1_470_TPlot.pdf
TRINITY_DN26799_c0_g1:137	si_s76	TRINITY_DN26799_c0_g1	126	146	137	-23.60	-15.70	0.665254237288135	17	9-19,138-128	1-8,146-139[UP5];20-21,127-126[UP3]	..(((((((((((........&........)))))))))))..	UUGAAAGGAAAGAUGUACUUG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN26799_c0_g1_137_TPlot.pdf
TRINITY_DN2679_c0_g1:1273	si_s94	TRINITY_DN2679_c0_g1	1260	1282	1273	-35.50	-25.40	0.715492957746479	4.5	1-13,1282-1270;14-17,1268-1265;18-21,1263-1260	x-x,1269-1269[BULt];x-x,1264-1264[BULt]	((((.((((.(((((((((((((&)))))))))))))-))))-))))	UAAUACCGAUAGUGAAGAAGAGG&CUUCUUCUUCGCU-UCGG-AUUG	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2679_c0_g1_1273_TPlot.pdf
TRINITY_DN2679_c0_g1:1274	si_s93	TRINITY_DN2679_c0_g1	1262	1283	1274	-34.80	-24.80	0.71264367816092	7	2-14,1282-1270;15-18,1268-1265	1-1,1283-1283[UP5];x-x,1269-1269[BULt];19-21,1264-1262[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	AUACCGAUAGUGAAGAAGAGGU&UCUUCUUCUUCGCU-UCGGAUU	2	0.993115340016426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2679_c0_g1_1274_TPlot.pdf
TRINITY_DN2679_c0_g1:1276	si_s91	TRINITY_DN2679_c0_g1	1264	1285	1276	-34.70	-24.80	0.714697406340058	8.5	4-16,1282-1270;17-20,1268-1265	1-3,1285-1283[UP5];x-x,1269-1269[BULt];21-21,1264-1264[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	ACCGAUAGUGAAGAAGAGGUAG&UUUCUUCUUCUUCGCU-UCGGA	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2679_c0_g1_1276_TPlot.pdf
TRINITY_DN2679_c0_g1:811	si_s818	TRINITY_DN2679_c0_g1	800	820	811	-23.70	-15.58	0.657383966244726	11	1-9,820-812;13-18,808-803	10-12,811-809[SIL];19-21,802-800[UP3]	...((((((...(((((((((&)))))))))...))))))...	GUCUUCAUUUAGGAGGAAAGG&CCUUUUCUUAAUAAUGAAAAA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN2679_c0_g1_811_TPlot.pdf
TRINITY_DN267_c0_g1:1666	si_a327	TRINITY_DN267_c0_g1	1651	1677	1666	-28.40	-19.30	0.679577464788732	10	1-4,1677-1674;5-17,1671-1659;18-21,1654-1651	x-x,1673-1672[BULt];x-x,1658-1655[BULt]	((((....(((((((((((((..((((&))))--)))))))))))))----))))	GGACCUCCGAGGGAUAAAAGAUCAUCA&UGAU--UUUUUUAUUCCUU----GUCC	2	0.999673723702483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN267_c0_g1_1666_TPlot.pdf
TRINITY_DN267_c0_g1:1667	si_a325	TRINITY_DN267_c0_g1	1657	1676	1667	-25.90	-17.80	0.687258687258687	6	2-11,1675-1666;13-20,1665-1658	1-1,1676-1676[UP5];12-12,x-x[BULq];21-21,1657-1657[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	CCGAGGGAU-AAAAGAUCAUC&CAUGAUUUUUUUAUUCCUUGU	2	0.996018473863355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN267_c0_g1_1667_TPlot.pdf
TRINITY_DN267_c0_g1:1696	si_s77	TRINITY_DN267_c0_g1	1685	1706	1696	-25.50	-16.90	0.662745098039216	8	1-5,1706-1702;6-10,1700-1696;12-20,1694-1686	x-x,1701-1701[BULt];11-11,1695-1695[SIL];21-21,1685-1685[UP3]	.(((((((((.(((((.(((((&)))))-))))).))))))))).	CGAGAAGGGAUAGAGACAAAGA&UUUUU-UUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN267_c0_g1_1696_TPlot.pdf
TRINITY_DN267_c0_g1:1703	si_s71	TRINITY_DN267_c0_g1	1691	1712	1703	-25.70	-17.40	0.67704280155642	7	2-11,1711-1702;12-16,1700-1696;18-21,1694-1691	1-1,1712-1712[UP5];x-x,1701-1701[BULt];17-17,1695-1695[SIL]	((((.(((((.((((((((((.&.))))))))))-))))).))))	GGGAUAGAGACAAAGAUAGAGA&CUUCUAUUUUU-UUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN267_c0_g1_1703_TPlot.pdf
TRINITY_DN267_c0_g1:2118	si_s69	TRINITY_DN267_c0_g1	2107	2128	2118	-23.40	-17.50	0.747863247863248	4.5	2-9,2127-2120;10-18,2118-2110;20-21,2108-2107	1-1,2128-2128[UP5];x-x,2119-2119[BULt];19-19,2109-2109[SIL]	((.(((((((((.((((((((.&.))))))))-))))))))).))	GAUAGAGAAAAAUAUAGAAGUA&AACUUCUAU-UUUUUUUCUUUC	3	0.999999980121405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN267_c0_g1_2118_TPlot.pdf
TRINITY_DN267_c0_g1:2120	si_s68	TRINITY_DN267_c0_g1	2108	2129	2120	-23.10	-15.60	0.675324675324675	7.5	3-10,2127-2120;11-19,2118-2110	1-2,2129-2128[UP5];x-x,2119-2119[BULt];20-21,2109-2108[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	AUAGAGAAAAAUAUAGAAGUAG&CAACUUCUAU-UUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN267_c0_g1_2120_TPlot.pdf
TRINITY_DN2680_c0_g1:1104	si_s761	TRINITY_DN2680_c0_g1	1093	1113	1104	-25.90	-16.86	0.650965250965251	7.5	3-12,1111-1102;17-21,1097-1093	1-2,1113-1112[UP5];13-16,1101-1098[SIL]	(((((....((((((((((..&..))))))))))....)))))	AGUGACCCUUCGUUGUUGUCC&AAACAACAACGAUUAAUUACU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN2680_c0_g1_1104_TPlot.pdf
TRINITY_DN2680_c0_g1:907	si_s312	TRINITY_DN2680_c0_g1	896	916	907	-29.00	-20.00	0.689655172413793	14	8-20,909-897	1-7,916-910[UP5];21-21,896-896[UP3]	.(((((((((((((.......&.......))))))))))))).	CAACAAGAAGGACACUUAGAU&AAAAUUCUGUCCUUCUUGUUA	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2680_c0_g1_907_TPlot.pdf
TRINITY_DN26815_c0_g1:50	si_s206	TRINITY_DN26815_c0_g1	39	61	50	-33.00	-21.80	0.660606060606061	8	1-5,61-57;6-9,55-52;10-12,50-48;14-21,46-39	x-x,56-56[BULt];x-x,51-51[BULt];13-13,47-47[SIL]	((((((((.(((.((((.(((((&)))))-))))-))).))))))))	UUCGGGCAGGGCUUGGUGACAUU&AAUGU-ACCA-GUUGUGUUCGAA	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN26815_c0_g1_50_TPlot.pdf
TRINITY_DN2681_c0_g1:2188	si_s72	TRINITY_DN2681_c0_g1	2175	2197	2188	-24.10	-16.60	0.688796680497925	8.5	1-6,2197-2192;8-16,2190-2182;17-21,2179-2175	7-7,2191-2191[SIL];x-x,2181-2180[BULt]	(((((..(((((((((.((((((&)))))).)))))))))--)))))	GAGGACCGAGGGAGAACAUGGAA&UUCUAUUUUUUUUCUU--UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2681_c0_g1_2188_TPlot.pdf
TRINITY_DN2681_c0_g1:2190	si_s70	TRINITY_DN2681_c0_g1	2177	2199	2190	-25.80	-18.20	0.705426356589147	7.5	1-8,2199-2192;10-18,2190-2182;19-21,2179-2177	9-9,2191-2191[SIL];x-x,2181-2180[BULt]	(((..(((((((((.((((((((&)))))))).)))))))))--)))	GGACCGAGGGAGAACAUGGAAGU&ACUUCUAUUUUUUUUCUU--UCC	4	0.999999999970129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2681_c0_g1_2190_TPlot.pdf
TRINITY_DN2681_c0_g1:2191	si_s69	TRINITY_DN2681_c0_g1	2180	2200	2191	-23.40	-16.60	0.70940170940171	7	1-9,2200-2192;11-19,2190-2182	10-10,2191-2191[SIL];20-21,2181-2180[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	CCGAGGGAGAACAUGGAAGUU&AACUUCUAUUUUUUUUCUUUC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2681_c0_g1_2191_TPlot.pdf
TRINITY_DN2681_c0_g1:2192	si_s68	TRINITY_DN2681_c0_g1	2181	2201	2192	-23.10	-19.50	0.844155844155844	6	1-10,2201-2192;12-20,2190-2182	11-11,2191-2191[SIL];21-21,2181-2181[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	CGAGGGAGAACAUGGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2681_c0_g1_2192_TPlot.pdf
TRINITY_DN2681_c0_g1:2193	si_s67	TRINITY_DN2681_c0_g1	2182	2202	2193	-25.60	-19.70	0.76953125	6	2-11,2201-2192;13-21,2190-2182	1-1,2202-2202[UP5];12-12,2191-2191[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	GAGGGAGAACAUGGAAGUUGA&GCAACUUCUAUUUUUUUUCUU	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2681_c0_g1_2193_TPlot.pdf
TRINITY_DN2681_c0_g1:2194	si_s66	TRINITY_DN2681_c0_g1	2183	2203	2194	-26.30	-18.50	0.703422053231939	6.5	3-12,2201-2192;14-21,2190-2183	1-2,2203-2202[UP5];13-13,2191-2191[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGGGAGAACAUGGAAGUUGAA&AGCAACUUCUAUUUUUUUUCU	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2681_c0_g1_2194_TPlot.pdf
TRINITY_DN2682_c1_g2:746	si_s441	TRINITY_DN2682_c1_g2	735	755	746	-23.20	-15.90	0.685344827586207	7	1-15,755-741;17-18,739-738	16-16,740-740[SIL];19-21,737-735[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UUGGUCAUAUAUAGUGUGUGA&UUACAUAUUAUAUAUAACAAC	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN2682_c1_g2_746_TPlot.pdf
TRINITY_DN2682_c1_g2:748	si_s439	TRINITY_DN2682_c1_g2	737	757	748	-21.50	-17.40	0.809302325581395	6	2-17,756-741;19-20,739-738	1-1,757-757[UP5];18-18,740-740[SIL];21-21,737-737[UP3]	.((.((((((((((((((((.&.)))))))))))))))).)).	GGUCAUAUAUAGUGUGUGAUA&AAUUACAUAUUAUAUAUAACA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN2682_c1_g2_748_TPlot.pdf
TRINITY_DN2682_c1_g2:752	si_s435	TRINITY_DN2682_c1_g2	741	761	752	-20.90	-15.80	0.755980861244019	11.5	6-21,756-741	1-5,761-757[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUAUAUAGUGUGUGAUAGUGU&CAAUAAUUACAUAUUAUAUAU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN2682_c1_g2_752_TPlot.pdf
TRINITY_DN2682_c2_g1:1034	si_a785	TRINITY_DN2682_c2_g1	1023	1044	1034	-25.90	-17.00	0.656370656370656	6.5	1-5,1044-1040;6-17,1038-1027	x-x,1039-1039[BULt];18-21,1026-1023[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	CUUUAUAGGAAAAUAGAAAGAG&CUCUU-CUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2682_c2_g1_1034_TPlot.pdf
TRINITY_DN2682_c2_g1:1939	si_a67	TRINITY_DN2682_c2_g1	1928	1948	1939	-27.20	-17.80	0.654411764705882	7	1-5,1948-1944;7-11,1942-1938;14-21,1935-1928	6-6,1943-1943[SIL];12-13,1937-1936[SIL]	((((((((..(((((.(((((&))))).)))))..))))))))	GAGAAACAUAUUGGACGAAGU&GCUUCUUUCAAAUUGUUUUUC	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2682_c2_g1_1939_TPlot.pdf
TRINITY_DN2682_c2_g1:2231	si_a172	TRINITY_DN2682_c2_g1	2221	2240	2231	-31.90	-20.90	0.655172413793103	7	3-12,2238-2229;14-16,2228-2226;18-21,2224-2221	1-2,2240-2239[UP5];13-13,x-x[BULq];17-17,2225-2225[SIL]	((((.(((-((((((((((..&..)))))))))).))).))))	AUGUCGUC-AGAUGGGUGAGA&AUUCACCCGUCUAGAUAAUAU	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN2682_c2_g1_2231_TPlot.pdf
TRINITY_DN2682_c2_g1:701	si_a72	TRINITY_DN2682_c2_g1	690	710	701	-21.90	-16.80	0.767123287671233	9	4-19,707-692	1-3,710-708[UP5];20-21,691-690[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAGAUGGAAAACGAUUUGCAC&UUUCAAAUUGUUUUUCAUUAU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN2682_c2_g1_701_TPlot.pdf
TRINITY_DN2682_c2_g1:704	si_a69	TRINITY_DN2682_c2_g1	693	716	704	-24.00	-17.00	0.708333333333333	11	1-6,716-711;7-21,707-693	x-x,710-708[BULt]	(((((((((((((((...((((((&))))))---)))))))))))))))	AUGGAAAACGAUUUGCACGGAGGG&UUCUUU---CAAAUUGUUUUUCAU	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN2682_c2_g1_704_TPlot.pdf
TRINITY_DN2683_c0_g1:2673	si_a632	TRINITY_DN2683_c0_g1	2662	2682	2673	-26.10	-17.30	0.662835249042146	12	5-6,2678-2677;8-20,2675-2663	1-4,2682-2679[UP5];7-7,2676-2676[SIL];21-21,2662-2662[UP3]	.(((((((((((((.((....&....)).))))))))))))).	UCUCAGGAAGAUCGUCAGCUU&AUUAUGUCGAUUUUUUUGAGU	4	0.999999996100949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2683_c0_g1_2673_TPlot.pdf
TRINITY_DN2683_c0_g1:2674	si_a631	TRINITY_DN2683_c0_g1	2663	2683	2674	-25.70	-17.10	0.665369649805448	12.5	6-7,2678-2677;9-21,2675-2663	1-5,2683-2679[UP5];8-8,2676-2676[SIL]	(((((((((((((.((.....&.....)).)))))))))))))	CUCAGGAAGAUCGUCAGCUUA&UAUUAUGUCGAUUUUUUUGAG	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN2683_c0_g1_2674_TPlot.pdf
TRINITY_DN2683_c0_g1:568	si_a318	TRINITY_DN2683_c0_g1	557	577	568	-22.50	-14.70	0.653333333333333	10.5	4-17,574-561	1-3,577-575[UP5];18-21,560-557[UP3]	....((((((((((((((...&...))))))))))))))....	AAUCAAAGAUUAUGGAUAUGG&AUUUAUCCAUGAUUUUUUUAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2683_c0_g1_568_TPlot.pdf
TRINITY_DN2683_c0_g1:574	si_s31	TRINITY_DN2683_c0_g1	563	583	574	-24.80	-16.70	0.673387096774194	6.5	1-9,583-575;11-14,573-570;16-19,568-565	10-10,574-574[SIL];15-15,569-569[SIL];20-21,564-563[UP3]	..((((.((((.(((((((((&))))))))).)))).))))..	AGAUUAUGGAUAUGGUUGCAA&UUGCAACUAAAUCUUUAAUAA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN2683_c0_g1_574_TPlot.pdf
TRINITY_DN2683_c0_g1:577	si_s28	TRINITY_DN2683_c0_g1	566	586	577	-27.00	-18.70	0.692592592592593	4.5	1-12,586-575;14-17,573-570;19-21,568-566	13-13,574-574[SIL];18-18,569-569[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	UUAUGGAUAUGGUUGCAAUUA&UGAUUGCAACUAAAUCUUUAA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN2683_c0_g1_577_TPlot.pdf
TRINITY_DN2683_c0_g1:8603	si_a73	TRINITY_DN2683_c0_g1	8592	8612	8603	-21.90	-14.30	0.65296803652968	5.5	1-8,8612-8605;10-13,8603-8600;15-20,8598-8593	9-9,8604-8604[SIL];14-14,8599-8599[SIL];21-21,8592-8592[UP3]	.((((((.((((.((((((((&)))))))).)))).)))))).	UGUAAUGUAGAAGAAUUUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2683_c0_g1_8603_TPlot.pdf
TRINITY_DN2683_c0_g1:8715	si_a18	TRINITY_DN2683_c0_g1	8704	8724	8715	-26.30	-18.10	0.688212927756654	9.5	4-16,8721-8709;18-21,8707-8704	1-3,8724-8722[UP5];17-17,8708-8708[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GAGCAAGAGAUGAAUGGGAAU&AAGCCUAUUUAUUUUUAGUUC	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN2683_c0_g1_8715_TPlot.pdf
TRINITY_DN2683_c0_g1:9312	si_a796	TRINITY_DN2683_c0_g1	9301	9321	9312	-32.70	-21.90	0.669724770642202	7.5	1-8,9321-9314;11-20,9311-9302	9-10,9313-9312[SIL];21-21,9301-9301[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	UCUUCGGGUUGAUAGAUGGAA&UUCUAUUUUCCAAUCCGAAGC	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN2683_c0_g1_9312_TPlot.pdf
TRINITY_DN2683_c0_g1:9313	si_a795	TRINITY_DN2683_c0_g1	9302	9322	9313	-30.20	-22.10	0.731788079470199	7.5	2-9,9321-9314;12-21,9311-9302	1-1,9322-9322[UP5];10-11,9313-9312[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	CUUCGGGUUGAUAGAUGGAAU&UUUCUAUUUUCCAAUCCGAAG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN2683_c0_g1_9313_TPlot.pdf
TRINITY_DN2683_c0_g1:9315	si_a793	TRINITY_DN2683_c0_g1	9304	9324	9315	-28.50	-18.80	0.659649122807018	10.5	4-11,9321-9314;14-21,9311-9304	1-3,9324-9322[UP5];12-13,9313-9312[SIL]	((((((((..((((((((...&...))))))))..))))))))	UCGGGUUGAUAGAUGGAAUUU&UUUUUCUAUUUUCCAAUCCGA	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN2683_c0_g1_9315_TPlot.pdf
TRINITY_DN2683_c0_g1:9428	si_s65	TRINITY_DN2683_c0_g1	9416	9437	9428	-26.00	-17.16	0.66	9.5	1-11,9437-9427;18-21,9419-9416	12-17,9426-9420[AILt]	((((.......(((((((((((&)))))))))))-......))))	GAAAUCUUCUGAGAAGUUGCUG&UAGCAACUUCU-AUUUUUUUUC	2	0.999962583392229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN2683_c0_g1_9428_TPlot.pdf
TRINITY_DN2683_c0_g1:9429	si_s64	TRINITY_DN2683_c0_g1	9418	9438	9429	-24.10	-16.30	0.676348547717842	10.5	1-12,9438-9427	13-21,9426-9418[UP3]	.........((((((((((((&)))))))))))).........	AAUCUUCUGAGAAGUUGCUGG&UUAGCAACUUCUAUUUUUUUU	3	0.999999993601988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2683_c0_g1_9429_TPlot.pdf
TRINITY_DN2683_c0_g1:9430	si_s63	TRINITY_DN2683_c0_g1	9419	9439	9430	-25.80	-19.70	0.763565891472868	10	1-13,9439-9427	14-21,9426-9419[UP3]	........(((((((((((((&)))))))))))))........	AUCUUCUGAGAAGUUGCUGGC&GUUAGCAACUUCUAUUUUUUU	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2683_c0_g1_9430_TPlot.pdf
TRINITY_DN2683_c0_g1:9431	si_s62	TRINITY_DN2683_c0_g1	9420	9440	9431	-26.50	-21.10	0.79622641509434	9	1-14,9440-9427	15-21,9426-9420[UP3]	.......((((((((((((((&)))))))))))))).......	UCUUCUGAGAAGUUGCUGGCU&AGUUAGCAACUUCUAUUUUUU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN2683_c0_g1_9431_TPlot.pdf
TRINITY_DN2683_c0_g1:9432	si_s61	TRINITY_DN2683_c0_g1	9421	9441	9432	-26.50	-21.40	0.807547169811321	9	2-15,9440-9427	1-1,9441-9441[UP5];16-21,9426-9421[UP3]	......((((((((((((((.&.))))))))))))))......	CUUCUGAGAAGUUGCUGGCUG&AAGUUAGCAACUUCUAUUUUU	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN2683_c0_g1_9432_TPlot.pdf
TRINITY_DN2683_c0_g1:9433	si_s60	TRINITY_DN2683_c0_g1	9422	9442	9433	-28.20	-21.40	0.75886524822695	10	3-16,9440-9427	1-2,9442-9441[UP5];17-21,9426-9422[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUCUGAGAAGUUGCUGGCUGC&CAAGUUAGCAACUUCUAUUUU	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN2683_c0_g1_9433_TPlot.pdf
TRINITY_DN2683_c0_g1:9434	si_s59	TRINITY_DN2683_c0_g1	9423	9443	9434	-29.20	-21.40	0.732876712328767	11	4-17,9440-9427	1-3,9443-9441[UP5];18-21,9426-9423[UP3]	....((((((((((((((...&...))))))))))))))....	UCUGAGAAGUUGCUGGCUGCU&UCAAGUUAGCAACUUCUAUUU	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN2683_c0_g1_9434_TPlot.pdf
TRINITY_DN2683_c0_g1:9435	si_s58	TRINITY_DN2683_c0_g1	9424	9444	9435	-29.30	-21.40	0.73037542662116	12	5-18,9440-9427	1-4,9444-9441[UP5];19-21,9426-9424[UP3]	...((((((((((((((....&....))))))))))))))...	CUGAGAAGUUGCUGGCUGCUU&UUCAAGUUAGCAACUUCUAUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN2683_c0_g1_9435_TPlot.pdf
TRINITY_DN2683_c0_g1:9436	si_s57	TRINITY_DN2683_c0_g1	9425	9445	9436	-29.30	-21.40	0.73037542662116	13	6-19,9440-9427	1-5,9445-9441[UP5];20-21,9426-9425[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGAGAAGUUGCUGGCUGCUUA&UUUCAAGUUAGCAACUUCUAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN2683_c0_g1_9436_TPlot.pdf
TRINITY_DN2683_c0_g1:9437	si_s56	TRINITY_DN2683_c0_g1	9426	9446	9437	-29.20	-21.40	0.732876712328767	14	7-20,9440-9427	1-6,9446-9441[UP5];21-21,9426-9426[UP3]	.((((((((((((((......&......)))))))))))))).	GAGAAGUUGCUGGCUGCUUAU&AUUUCAAGUUAGCAACUUCUA	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN2683_c0_g1_9437_TPlot.pdf
TRINITY_DN2683_c0_g1:9438	si_s55	TRINITY_DN2683_c0_g1	9427	9447	9438	-30.80	-21.00	0.681818181818182	15	8-21,9440-9427	1-7,9447-9441[UP5]	((((((((((((((.......&.......))))))))))))))	AGAAGUUGCUGGCUGCUUAUA&GAUUUCAAGUUAGCAACUUCU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN2683_c0_g1_9438_TPlot.pdf
TRINITY_DN2683_c0_g2:165	si_a401	TRINITY_DN2683_c0_g2	154	174	165	-22.60	-14.90	0.65929203539823	10.5	2-13,173-162;15-18,160-157	1-1,174-174[UP5];14-14,161-161[SIL];19-21,156-154[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	AUCUGGAGGAGGCAGUUCUGA&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999980232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2683_c0_g2_165_TPlot.pdf
TRINITY_DN26848_c0_g1:65	si_a78	TRINITY_DN26848_c0_g1	54	74	65	-22.30	-16.70	0.748878923766816	7.5	2-16,73-59;18-19,57-56	1-1,74-74[UP5];17-17,58-58[SIL];20-21,55-54[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	AGCUAGAUAGUGAGAGACAAC&AUUGUUUUUCAUUAUUAAGAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN26848_c0_g1_65_TPlot.pdf
TRINITY_DN26848_c0_g1:70	si_a73	TRINITY_DN26848_c0_g1	59	79	70	-21.90	-15.20	0.694063926940639	13.5	7-21,73-59	1-6,79-74[UP5]	(((((((((((((((......&......)))))))))))))))	GAUAGUGAGAGACAACUUAUU&UUCAAAUUGUUUUUCAUUAUU	4	0.9999998260223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN26848_c0_g1_70_TPlot.pdf
TRINITY_DN2685_c0_g1:2687	si_s99	TRINITY_DN2685_c0_g1	2676	2697	2687	-34.60	-22.90	0.661849710982659	8	1-6,2697-2692;7-15,2690-2682;17-17,2680-2680	x-x,2691-2691[BULt];16-16,2681-2681[SIL];18-21,2679-2676[UP3]	....(.(((((((((.((((((&))))))-))))))))).)....	UACGUGGAUCCGAAGACGAAGA&UCUUCG-CUUCGGAUUGGAAAA	2	0.990244922553744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN2685_c0_g1_2687_TPlot.pdf
TRINITY_DN2685_c0_g1:2692	si_s95	TRINITY_DN2685_c0_g1	2680	2701	2692	-36.30	-27.10	0.746556473829201	6	2-10,2700-2692;11-19,2690-2682;21-21,2680-2680	1-1,2701-2701[UP5];x-x,2691-2691[BULt];20-20,2681-2681[SIL]	(.(((((((((.(((((((((.&.)))))))))-))))))))).)	UGGAUCCGAAGACGAAGAAGGC&UUCUUCUUCG-CUUCGGAUUGG	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN2685_c0_g1_2692_TPlot.pdf
TRINITY_DN2685_c0_g1:2693	si_s94	TRINITY_DN2685_c0_g1	2681	2702	2693	-35.50	-26.60	0.749295774647887	7.5	3-11,2700-2692;12-20,2690-2682	1-2,2702-2701[UP5];x-x,2691-2691[BULt];21-21,2681-2681[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	GGAUCCGAAGACGAAGAAGGCG&CUUCUUCUUCG-CUUCGGAUUG	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2685_c0_g1_2693_TPlot.pdf
TRINITY_DN2685_c0_g1:2694	si_s93	TRINITY_DN2685_c0_g1	2682	2703	2694	-34.80	-28.00	0.804597701149425	5.5	1-2,2703-2702;4-12,2700-2692;13-21,2690-2682	3-3,2701-2701[SIL];x-x,2691-2691[BULt]	(((((((((.(((((((((.((&)).)))))))))-)))))))))	GAUCCGAAGACGAAGAAGGCGA&UCUUCUUCUUCG-CUUCGGAUU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2685_c0_g1_2694_TPlot.pdf
TRINITY_DN2685_c0_g1:2696	si_s91	TRINITY_DN2685_c0_g1	2684	2705	2696	-34.70	-27.40	0.789625360230547	5	1-4,2705-2702;6-14,2700-2692;15-21,2690-2684	5-5,2701-2701[SIL];x-x,2691-2691[BULt]	(((((((.(((((((((.((((&)))).)))))))))-)))))))	UCCGAAGACGAAGAAGGCGAGA&UUUCUUCUUCUUCG-CUUCGGA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2685_c0_g1_2696_TPlot.pdf
TRINITY_DN2685_c0_g1:2697	si_s90	TRINITY_DN2685_c0_g1	2685	2706	2697	-35.30	-28.60	0.810198300283286	5	1-5,2706-2702;7-15,2700-2692;16-21,2690-2685	6-6,2701-2701[SIL];x-x,2691-2691[BULt]	((((((.(((((((((.(((((&))))).)))))))))-))))))	CCGAAGACGAAGAAGGCGAGAG&CUUUCUUCUUCUUCG-CUUCGG	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2685_c0_g1_2697_TPlot.pdf
TRINITY_DN2685_c0_g1:2698	si_s89	TRINITY_DN2685_c0_g1	2686	2707	2698	-35.30	-28.10	0.796033994334278	5	1-6,2707-2702;8-16,2700-2692;17-21,2690-2686	7-7,2701-2701[SIL];x-x,2691-2691[BULt]	(((((.(((((((((.((((((&)))))).)))))))))-)))))	CGAAGACGAAGAAGGCGAGAGG&CCUUUCUUCUUCUUCG-CUUCG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2685_c0_g1_2698_TPlot.pdf
TRINITY_DN2685_c0_g1:2974	si_s896	TRINITY_DN2685_c0_g1	2957	2983	2974	-31.60	-20.60	0.651898734177215	10	2-11,2982-2973;12-15,2971-2968;16-20,2962-2958	1-1,2983-2983[UP5];x-x,2972-2972[BULt];x-x,2967-2963[BULt];21-21,2957-2957[UP3]	.(((((.....((((.((((((((((.&.))))))))))-))))-----))))).	CGAGAUACGAAUGGACGAGAAAGCCUC&UAGGCUUUCUC-UUCA-----AUUUCA	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN2685_c0_g1_2974_TPlot.pdf
TRINITY_DN2685_c0_g1:3037	si_a320	TRINITY_DN2685_c0_g1	3025	3045	3037	-24.40	-16.20	0.663934426229508	6.5	2-6,3044-3040;8-11,3039-3036;12-21,3034-3025	1-1,3045-3045[UP5];7-7,x-x[BULq];x-x,3035-3035[BULt]	((((((((((.((((-(((((.&.))))).))))-))))))))))	GAGUAAAAAAUAUCA-GGAUGG&UUAUCCAUGAU-UUUUUUAUUC	4	0.999999928384918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN2685_c0_g1_3037_TPlot.pdf
TRINITY_DN2685_c0_g1:3042	si_a784	TRINITY_DN2685_c0_g1	3031	3051	3042	-24.70	-16.40	0.663967611336032	7	2-13,3050-3039;16-21,3036-3031	1-1,3051-3051[UP5];14-15,3038-3037[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	AAAAUAUCAGGAUGGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2685_c0_g1_3042_TPlot.pdf
TRINITY_DN2686_c0_g1:10625	si_a758	TRINITY_DN2686_c0_g1	10614	10634	10625	-34.00	-22.30	0.655882352941176	11	1-12,10634-10623	13-21,10622-10614[UP3]	.........((((((((((((&)))))))))))).........	GUACGCUUUGCCCAAAGGGGG&CCUCCUUUGGGUUUUUGAUUG	4	0.999999983461381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2686_c0_g1_10625_TPlot.pdf
TRINITY_DN2686_c0_g1:3441	si_s636	TRINITY_DN2686_c0_g1	3429	3450	3441	-40.80	-28.70	0.70343137254902	7	1-5,3450-3446;7-7,3444-3444;9-15,3442-3436;16-21,3434-3429	6-6,3445-3445[SIL];8-8,3443-3443[SIL];x-x,3435-3435[BULt]	((((((.(((((((.(.(((((&))))).).)))))))-))))))	UCGAGGCGCAAGCGGCAGCGAA&UUCGUAGGCGUUUGC-CCUCGA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN2686_c0_g1_3441_TPlot.pdf
TRINITY_DN2686_c0_g1:3506	si_a757	TRINITY_DN2686_c0_g1	3495	3515	3506	-33.10	-21.80	0.658610271903323	8	1-7,3515-3509;10-13,3506-3503;16-20,3500-3496	8-9,3508-3507[SIL];14-15,3502-3501[SIL];21-21,3495-3495[UP3]	.(((((..((((..(((((((&)))))))..))))..))))).	UAUCAAUUACCUCCAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.999999998758606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN2686_c0_g1_3506_TPlot.pdf
TRINITY_DN2686_c0_g1:3507	si_a756	TRINITY_DN2686_c0_g1	3496	3516	3507	-33.10	-22.00	0.664652567975831	8	2-8,3515-3509;11-14,3506-3503;17-21,3500-3496	1-1,3516-3516[UP5];9-10,3508-3507[SIL];15-16,3502-3501[SIL]	(((((..((((..(((((((.&.)))))))..))))..)))))	AUCAAUUACCUCCAGGAGGUC&AACCUCCUUUGGGUUUUUGAU	4	0.999999987090159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2686_c0_g1_3507_TPlot.pdf
TRINITY_DN2686_c0_g1:5464	si_s69	TRINITY_DN2686_c0_g1	5453	5474	5464	-23.40	-15.30	0.653846153846154	8	2-7,5473-5468;8-12,5466-5462;15-21,5459-5453	1-1,5474-5474[UP5];x-x,5467-5467[BULt];13-14,5461-5460[SIL]	(((((((..(((((.((((((.&.))))))-)))))..)))))))	GAGAGGACUAGGAUGAGAAGUC&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2686_c0_g1_5464_TPlot.pdf
TRINITY_DN2686_c0_g1:5979	si_a145	TRINITY_DN2686_c0_g1	5968	5988	5979	-28.10	-18.50	0.658362989323843	12	5-5,5984-5984;7-21,5982-5968	1-4,5988-5985[UP5];6-6,5983-5983[SIL]	(((((((((((((((.(....&....).)))))))))))))))	GCCUUAAGACAAUGAGGUCUU&UAAUCGUUGUUGUUUUAAGGU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN2686_c0_g1_5979_TPlot.pdf
TRINITY_DN2686_c0_g1:9095	si_a47	TRINITY_DN2686_c0_g1	9085	9105	9095	-41.20	-29.80	0.723300970873786	5.5	1-5,9105-9101;6-16,9099-9089;18-21,9088-9085	x-x,9100-9100[BULt];17-17,x-x[BULq]	((((-(((((((((((.(((((&)))))-))))))))))).))))	CGAG-CGGCUUCUAGGUCCUAC&GUAGG-UCUAGGAGUCGACUCG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN2686_c0_g1_9095_TPlot.pdf
TRINITY_DN2686_c0_g1:9096	si_a46	TRINITY_DN2686_c0_g1	9086	9106	9096	-42.10	-29.10	0.691211401425178	6	1-6,9106-9101;7-17,9099-9089;19-21,9088-9086	x-x,9100-9100[BULt];18-18,x-x[BULq]	(((-(((((((((((.((((((&))))))-))))))))))).)))	GAG-CGGCUUCUAGGUCCUACU&GGUAGG-UCUAGGAGUCGACUC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN2686_c0_g1_9096_TPlot.pdf
TRINITY_DN2686_c0_g1:9097	si_a45	TRINITY_DN2686_c0_g1	9087	9107	9097	-41.60	-27.90	0.670673076923077	6	1-7,9107-9101;8-18,9099-9089;20-21,9088-9087	x-x,9100-9100[BULt];19-19,x-x[BULq]	((-(((((((((((.(((((((&)))))))-))))))))))).))	AG-CGGCUUCUAGGUCCUACUG&CGGUAGG-UCUAGGAGUCGACU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a45_TRINITY_DN2686_c0_g1_9097_TPlot.pdf
TRINITY_DN2686_c0_g1:9099	si_a43	TRINITY_DN2686_c0_g1	9088	9109	9099	-42.30	-27.60	0.652482269503546	9	3-9,9107-9101;10-20,9099-9089	1-2,9109-9108[UP5];x-x,9100-9100[BULt];21-21,9088-9088[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	GCGGCUUCUAGGUCCUACUGUC&ACCGGUAGG-UCUAGGAGUCGA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN2686_c0_g1_9099_TPlot.pdf
TRINITY_DN2686_c0_g1:9101	si_a42	TRINITY_DN2686_c0_g1	9089	9109	9101	-43.30	-28.20	0.651270207852194	7	1-3,9109-9107;5-10,9106-9101;11-21,9099-9089	4-4,x-x[BULq];x-x,9100-9100[BULt]	(((((((((((.((((((-(((&))).))))))-)))))))))))	CGGCUUCUAGGUCCUACU-GUC&GACCGGUAGG-UCUAGGAGUCG	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a42_TRINITY_DN2686_c0_g1_9101_TPlot.pdf
TRINITY_DN2686_c0_g1:9718	si_a502	TRINITY_DN2686_c0_g1	9704	9727	9718	-32.10	-22.70	0.707165109034268	10	2-15,9726-9713;16-19,9709-9706	1-1,9727-9727[UP5];x-x,9712-9710[BULt];20-21,9705-9704[UP3]	..((((...((((((((((((((.&.))))))))))))))---))))..	GCUCCAGAGAGGGAGGCGAAGGAA&GUUUUUCGUCUUCCU---UGGAAU	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2686_c0_g1_9718_TPlot.pdf
TRINITY_DN2687_c0_g2:274	si_a454	TRINITY_DN2687_c0_g2	263	283	274	-21.30	-14.30	0.671361502347418	7.5	3-12,281-272;14-21,270-263	1-2,283-282[UP5];13-13,271-271[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	UAUUGUAUUUAACGAUAGUCA&UAAUUGUUGUUAUAUAUAAUA	1	0.151342549434574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN2687_c0_g2_274_TPlot.pdf
TRINITY_DN2687_c1_g2:2493	si_a412	TRINITY_DN2687_c1_g2	2482	2503	2493	-18.30	-11.90	0.650273224043716	8.5	1-9,2503-2495;10-19,2493-2484	x-x,2494-2494[BULt];20-21,2483-2482[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	UUUUUGUUUAGAUUGUGAAUAA&UUGUUUAUA-UUUAAAUAAAUA	2	0.999985288146911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2687_c1_g2_2493_TPlot.pdf
TRINITY_DN2688_c0_g1:896	si_a760	TRINITY_DN2688_c0_g1	884	905	896	-31.10	-20.50	0.659163987138264	6.5	1-13,905-893;15-17,892-890;18-21,887-884	14-14,x-x[BULq];x-x,889-888[BULt]	((((..(((-(((((((((((((&))))))))))))).)))--))))	GUCAUCAUC-AGAAUCCGAAGGA&UCCUUUGGGUUUUUGAU--UGAU	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2688_c0_g1_896_TPlot.pdf
TRINITY_DN2689_c0_g1:1509	si_a819	TRINITY_DN2689_c0_g1	1498	1518	1509	-28.90	-19.60	0.678200692041523	8	3-17,1516-1502	1-2,1518-1517[UP5];18-21,1501-1498[UP3]	....(((((((((((((((..&..)))))))))))))))....	GCGGCUUUCCUUUUUUCUUGA&AGAAGAAGAAAGGAAAGAAAA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN2689_c0_g1_1509_TPlot.pdf
TRINITY_DN2689_c0_g1:2170	si_s89	TRINITY_DN2689_c0_g1	2157	2179	2170	-35.30	-23.40	0.662889518413598	7	1-10,2179-2170;11-12,2168-2167;14-14,2165-2165;15-20,2163-2158	x-x,2169-2169[BULt];13-13,2166-2166[SIL];x-x,2164-2164[BULt];21-21,2157-2157[UP3]	.((((((.(.((.((((((((((&))))))))))-)).)-)))))).	AGAAGCGCACGACAGAGGAGAGG&CCUUUCUUCU-UCUU-CGCUUCG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2689_c0_g1_2170_TPlot.pdf
TRINITY_DN2689_c0_g1:2186	si_s66	TRINITY_DN2689_c0_g1	2175	2198	2186	-26.30	-17.50	0.665399239543726	10.5	1-4,2198-2195;5-12,2191-2184;14-21,2182-2175	x-x,2194-2192[BULt];13-13,2183-2183[SIL]	((((((((.((((((((...((((&))))---)))))))).))))))))	AGAGGAAGCAUGGAGGUGCAUGCU&AGCA---ACUUCUAUUUUUUUUCU	4	0.999999993050157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN2689_c0_g1_2186_TPlot.pdf
TRINITY_DN268_c0_g1:1252	si_a46	TRINITY_DN268_c0_g1	1241	1262	1252	-42.10	-28.10	0.667458432304038	10	1-9,1262-1254;12-19,1250-1243	10-11,1253-1251[AILt];20-21,1242-1241[UP3]	..((((((((...(((((((((&)))))))))-..))))))))..	UCGUCGACUCGGAAGAUCUGCC&GGUAGGUCU-AGGAGUCGACUC	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN268_c0_g1_1252_TPlot.pdf
TRINITY_DN268_c0_g1:1449	si_s627	TRINITY_DN268_c0_g1	1435	1458	1449	-36.10	-23.94	0.663157894736842	9.5	1-14,1458-1445;16-18,1440-1438	15-15,1444-1441[AILt];19-21,1437-1435[UP3]	...(((....((((((((((((((&))))))))))))))---.)))...	UCGGCCAACCGCGAGAAGAUUGCU&AGCGAUCUUUUCGU---AGGCGUU	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN268_c0_g1_1449_TPlot.pdf
TRINITY_DN268_c0_g1:1451	si_s625	TRINITY_DN268_c0_g1	1437	1460	1451	-37.00	-24.24	0.655135135135135	10.5	3-16,1458-1445;18-20,1440-1438	1-2,1460-1459[UP5];17-17,1444-1441[AILt];21-21,1437-1437[UP3]	.(((....((((((((((((((..&..))))))))))))))---.))).	GGCCAACCGCGAGAAGAUUGCUGA&CAAGCGAUCUUUUCGU---AGGCG	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN268_c0_g1_1451_TPlot.pdf
TRINITY_DN268_c0_g1:1539	si_s79	TRINITY_DN268_c0_g1	1528	1548	1539	-26.20	-17.40	0.66412213740458	10	2-8,1547-1541;11-19,1538-1530	1-1,1548-1548[UP5];9-10,1540-1539[SIL];20-21,1529-1528[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	AUGAAGGAGGGCCAGAAGAGU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN268_c0_g1_1539_TPlot.pdf
TRINITY_DN268_c0_g1:1540	si_s78	TRINITY_DN268_c0_g1	1529	1549	1540	-26.20	-17.40	0.66412213740458	11	3-9,1547-1541;12-20,1538-1530	1-2,1549-1548[UP5];10-11,1540-1539[SIL];21-21,1529-1529[UP3]	.(((((((((..(((((((..&..)))))))..))))))))).	UGAAGGAGGGCCAGAAGAGUA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN268_c0_g1_1540_TPlot.pdf
TRINITY_DN268_c0_g1:1541	si_s77	TRINITY_DN268_c0_g1	1530	1550	1541	-25.50	-17.00	0.666666666666667	12	4-10,1547-1541;13-21,1538-1530	1-3,1550-1548[UP5];11-12,1540-1539[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GAAGGAGGGCCAGAAGAGUAU&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN268_c0_g1_1541_TPlot.pdf
TRINITY_DN268_c0_g1:1748	si_s92	TRINITY_DN268_c0_g1	1737	1757	1748	-34.90	-27.20	0.779369627507163	4.5	1-12,1757-1746;14-19,1744-1739	13-13,1745-1745[SIL];20-21,1738-1737[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GACCGAGGAGGAGAAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN268_c0_g1_1748_TPlot.pdf
TRINITY_DN268_c0_g1:1749	si_s91	TRINITY_DN268_c0_g1	1738	1758	1749	-34.70	-27.60	0.795389048991354	4	1-13,1758-1746;15-20,1744-1739	14-14,1745-1745[SIL];21-21,1738-1738[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	ACCGAGGAGGAGAAGAAGAAG&UUUCUUCUUCUUCGCUUCGGA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN268_c0_g1_1749_TPlot.pdf
TRINITY_DN268_c0_g1:1751	si_s89	TRINITY_DN268_c0_g1	1740	1765	1751	-35.30	-25.10	0.711048158640227	13	1-4,1765-1762;5-15,1756-1746;17-21,1744-1740	x-x,1761-1757[BULt];16-16,1745-1745[SIL]	(((((.(((((((((((.....((((&))))-----))))))))))).)))))	CGAGGAGGAGAAGAAGAAGUUCGAGG&CCUU-----UCUUCUUCUUCGCUUCG	3	0.99999280884472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN268_c0_g1_1751_TPlot.pdf
TRINITY_DN268_c0_g1:1752	si_s68	TRINITY_DN268_c0_g1	1741	1761	1752	-23.10	-17.00	0.735930735930736	6.5	2-8,1760-1754;10-21,1752-1741	1-1,1761-1761[UP5];9-9,1753-1753[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	GAGGAGGAGAAGAAGAAGUUC&CAACUUCUAUUUUUUUUCUUU	3	0.99999266178446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN268_c0_g1_1752_TPlot.pdf
TRINITY_DN268_c0_g1:1829	si_a326	TRINITY_DN268_c0_g1	1819	1838	1829	-26.20	-18.50	0.706106870229008	9	1-11,1838-1828;15-21,1825-1819	12-14,1827-1826[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	GACAAGGCC-GAGAAGGUCGU&AUGAUUUUUUUAUUCCUUGUC	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN268_c0_g1_1829_TPlot.pdf
TRINITY_DN268_c0_g1:2019	si_s897	TRINITY_DN268_c0_g1	2008	2029	2019	-31.30	-21.20	0.677316293929712	8	2-7,2028-2023;8-8,2021-2021;10-19,2019-2010	1-1,2029-2029[UP5];x-x,2022-2022[BULt];9-9,2020-2020[SIL];20-21,2009-2008[UP3]	..((((((((((.(.((((((.&.))))))-).))))))))))..	CAGGAGUUGAAGCGCAAAGCCG&AGGCUUU-CUCUUCAAUUUCAA	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN268_c0_g1_2019_TPlot.pdf
TRINITY_DN268_c0_g1:2020	si_s896	TRINITY_DN268_c0_g1	2009	2030	2020	-31.60	-21.20	0.670886075949367	9	3-8,2028-2023;9-9,2021-2021;11-20,2019-2010	1-2,2030-2029[UP5];x-x,2022-2022[BULt];10-10,2020-2020[SIL];21-21,2009-2009[UP3]	.((((((((((.(.((((((..&..))))))-).)))))))))).	AGGAGUUGAAGCGCAAAGCCGA&UAGGCUUU-CUCUUCAAUUUCA	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN268_c0_g1_2020_TPlot.pdf
TRINITY_DN268_c0_g1:753	si_a500	TRINITY_DN268_c0_g1	742	767	753	-34.40	-24.00	0.697674418604651	16	1-6,767-762;7-10,756-753;12-20,751-743	x-x,761-757[BULt];11-11,752-752[SIL];21-21,742-742[UP3]	.(((((((((.((((.....((((((&))))))-----)))).))))))))).	ACCAAGGAAGUCGAACUUGAGGGCGA&UCGUUU-----UUCGUCUUCCUUGGA	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN268_c0_g1_753_TPlot.pdf
TRINITY_DN268_c0_g1:803	si_s896	TRINITY_DN268_c0_g1	792	812	803	-31.60	-25.00	0.791139240506329	7	3-15,810-798;17-20,796-793	1-2,812-811[UP5];16-16,797-797[SIL];21-21,792-792[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	GGAGGCUGAAGAGAAGGCCGC&UAGGCUUUCUCUUCAAUUUCA	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN268_c0_g1_803_TPlot.pdf
TRINITY_DN268_c0_g1:808	si_s891	TRINITY_DN268_c0_g1	797	817	808	-29.60	-22.50	0.760135135135135	15	8-20,810-798	1-7,817-811[UP5];21-21,797-797[UP3]	.(((((((((((((.......&.......))))))))))))).	CUGAAGAGAAGGCCGCAAAGG&AUAAAUAGGCUUUCUCUUCAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN268_c0_g1_808_TPlot.pdf
TRINITY_DN268_c0_g1:833	si_a758	TRINITY_DN268_c0_g1	822	844	833	-34.00	-22.80	0.670588235294118	9	1-8,844-837;9-16,834-827;19-21,824-822	x-x,836-835[BULt];17-18,826-825[SIL]	(((..((((((((..((((((((&))))))))--))))))))..)))	CGAGAAGAAACCUGAAGAGGAGG&CCUCCUUU--GGGUUUUUGAUUG	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN268_c0_g1_833_TPlot.pdf
TRINITY_DN268_c0_g1:848	si_s82	TRINITY_DN268_c0_g1	836	858	848	-28.90	-20.70	0.716262975778547	7.5	1-6,858-853;7-11,851-847;12-21,845-836	x-x,852-852[BULt];x-x,846-846[BULt]	((((((((((.(((((.((((((&))))))-)))))-))))))))))	AAGAGGAGGGCGAGGACAAGAAG&UUUCUU-UCCUU-UCUUCUUCUU	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN268_c0_g1_848_TPlot.pdf
TRINITY_DN268_c0_g1:866	si_a785	TRINITY_DN268_c0_g1	855	876	866	-25.90	-19.30	0.745173745173745	7	1-9,876-868;10-14,866-862;16-21,860-855	x-x,867-867[BULt];15-15,861-861[SIL]	((((((.(((((.(((((((((&)))))))))-))))).))))))	GAAGGUUGAAGAGGUAGAGGAG&CUCUUCUAU-UUUUCUAUUUUC	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN268_c0_g1_866_TPlot.pdf
TRINITY_DN268_c0_g1:872	si_s805	TRINITY_DN268_c0_g1	861	881	872	-28.60	-19.00	0.664335664335664	9.5	1-3,881-879;5-9,877-873;11-20,871-862	4-4,878-878[SIL];10-10,872-872[SIL];21-21,861-861[UP3]	.((((((((((.(((((.(((&))).))))).)))))))))).	UGAAGAGGUAGAGGAGGAGAA&UUUAUCUUCGUUACCUUUUCU	4	0.999999999944512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN268_c0_g1_872_TPlot.pdf
TRINITY_DN268_c0_g1:881	si_s83	TRINITY_DN268_c0_g1	870	891	881	-30.90	-23.50	0.760517799352751	7.5	2-7,890-885;8-20,883-871	1-1,891-891[UP5];x-x,884-884[BULt];21-21,870-870[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	AGAGGAGGAGAAAGAGGAGGAG&UUCUUUC-CUUUCUUCUUCUUC	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN268_c0_g1_881_TPlot.pdf
TRINITY_DN268_c0_g1:882	si_s82	TRINITY_DN268_c0_g1	871	892	882	-28.90	-25.00	0.865051903114187	6.5	1-8,892-885;9-21,883-871	x-x,884-884[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	GAGGAGGAGAAAGAGGAGGAGA&UUUCUUUC-CUUUCUUCUUCUU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN268_c0_g1_882_TPlot.pdf
TRINITY_DN268_c0_g1:889	si_s76	TRINITY_DN268_c0_g1	877	898	889	-23.60	-18.60	0.788135593220339	9	3-14,896-885;15-21,883-877	1-2,898-897[UP5];x-x,884-884[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	GAGAAAGAGGAGGAGAAGGACA&AUUUUUUUUCUUUC-CUUUCUU	3	0.999999997320845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN268_c0_g1_889_TPlot.pdf
TRINITY_DN268_c0_g1:890	si_s75	TRINITY_DN268_c0_g1	878	899	890	-24.00	-17.30	0.720833333333333	10.5	4-15,896-885;16-21,883-878	1-3,899-897[UP5];x-x,884-884[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	AGAAAGAGGAGGAGAAGGACAA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN268_c0_g1_890_TPlot.pdf
TRINITY_DN2690_c0_g1:236	si_a57	TRINITY_DN2690_c0_g1	223	245	236	-36.60	-23.80	0.650273224043716	8	1-7,245-239;10-17,236-229;18-19,226-225	8-9,238-237[SIL];x-x,228-227[BULt];20-21,224-223[UP3]	..((..((((((((..(((((((&)))))))..))))))))--))..	ACGAUCAAGAAGCGCUUCGACUC&GAGUCGACUCGCUUCUU--UCAA	3	0.999947712872037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN2690_c0_g1_236_TPlot.pdf
TRINITY_DN2690_c0_g1:551	si_a72	TRINITY_DN2690_c0_g1	540	562	551	-21.90	-15.10	0.689497716894977	11	1-6,562-557;7-19,554-542	x-x,556-555[BULt];20-21,541-540[UP3]	..(((((((((((((..((((((&))))))--)))))))))))))..	CAAAUGGAGGGCAGUCCUUGAGA&UUUCAA--AUUGUUUUUCAUUAU	3	0.999999959626296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN2690_c0_g1_551_TPlot.pdf
TRINITY_DN2690_c0_g1:552	si_a71	TRINITY_DN2690_c0_g1	541	563	552	-23.30	-15.30	0.656652360515022	10.5	2-7,562-557;8-20,554-542	1-1,563-563[UP5];x-x,556-555[BULt];21-21,541-541[UP3]	.(((((((((((((..((((((.&.))))))--))))))))))))).	AAAUGGAGGGCAGUCCUUGAGAU&CUUUCAA--AUUGUUUUUCAUUA	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN2690_c0_g1_552_TPlot.pdf
TRINITY_DN2690_c0_g1:721	si_s809	TRINITY_DN2690_c0_g1	710	730	721	-28.50	-18.80	0.659649122807018	10	1-13,730-718	14-21,717-710[UP3]	........(((((((((((((&)))))))))))))........	ACUGCGCCAAGGUGACGGAGA&UCUUCGUUACCUUUUCUUAAU	4	0.999999999925919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN2690_c0_g1_721_TPlot.pdf
TRINITY_DN2690_c0_g1:730	si_s800	TRINITY_DN2690_c0_g1	719	737	730	-29.70	-20.20	0.68013468013468	10	2-6,736-732;10-21,730-719	1-1,737-737[UP5];7-9,731-731[AILq]	((((((((((((.--(((((.&.)))))...))))))))))))	AGGUGACGGAGAC--AGUGCU&CGUAUUUUAUCUUCGUUACCU	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN2690_c0_g1_730_TPlot.pdf
TRINITY_DN26914_c0_g1:241	si_a404	TRINITY_DN26914_c0_g1	230	250	241	-21.70	-18.10	0.834101382488479	5.5	4-21,247-230	1-3,250-248[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAAAUAUGAACAAAACAACGG&GAAUUGUUUUGUUUAUAUUUA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN26914_c0_g1_241_TPlot.pdf
TRINITY_DN2691_c0_g1:4692	si_s67	TRINITY_DN2691_c0_g1	4681	4701	4692	-25.60	-19.00	0.7421875	7	1-7,4701-4695;10-20,4692-4682	8-9,4694-4693[SIL];21-21,4681-4681[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	UAGAAAGGAAAUUAGAGUUGC&GCAACUUCUAUUUUUUUUCUU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2691_c0_g1_4692_TPlot.pdf
TRINITY_DN26923_c0_g1:109	si_s75	TRINITY_DN26923_c0_g1	97	118	109	-24.00	-16.50	0.6875	9.5	4-18,115-101;19-20,99-98	1-3,118-116[UP5];x-x,100-100[BULt];21-21,97-97[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	UGAUAAGGAGAGGGAAAAAUGU&UAUUUUUUUUCUUUCCUU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN26923_c0_g1_109_TPlot.pdf
TRINITY_DN26923_c0_g1:111	si_s73	TRINITY_DN26923_c0_g1	100	120	111	-24.00	-15.80	0.658333333333333	12.5	6-20,115-101	1-5,120-116[UP5];21-21,100-100[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAAGGAGAGGGAAAAAUGUCC&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN26923_c0_g1_111_TPlot.pdf
TRINITY_DN26923_c0_g1:112	si_s72	TRINITY_DN26923_c0_g1	101	121	112	-24.10	-15.80	0.655601659751037	13	7-21,115-101	1-6,121-116[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGAGAGGGAAAAAUGUCCA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN26923_c0_g1_112_TPlot.pdf
TRINITY_DN26923_c0_g1:481	si_s312	TRINITY_DN26923_c0_g1	470	490	481	-29.00	-19.90	0.686206896551724	13	6-18,485-473	1-5,490-486[UP5];19-21,472-470[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUGUAGGAAGGACAGAUUUAA&AAAAUUCUGUCCUUCUUGUUA	3	0.99999937914353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN26923_c0_g1_481_TPlot.pdf
TRINITY_DN26923_c0_g1:692	si_s893	TRINITY_DN26923_c0_g1	681	701	692	-29.10	-21.20	0.728522336769759	14.5	6-17,696-685	1-5,701-697[UP5];18-21,684-681[UP3]	....((((((((((((.....&.....))))))))))))....	AGAAGAGGAGAAGGCCAAAGC&AAAUAGGCUUUCUCUUCAAUU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN26923_c0_g1_692_TPlot.pdf
TRINITY_DN2692_c0_g1:358	si_a451	TRINITY_DN2692_c0_g1	347	367	358	-23.60	-16.50	0.699152542372881	8	2-7,366-361;10-20,358-348	1-1,367-367[UP5];8-9,360-359[SIL];21-21,347-347[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	AGUAUAUGACAAAUGUUAUCA&AGAUAAUUGUUGUUAUAUAUA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN2692_c0_g1_358_TPlot.pdf
TRINITY_DN2692_c0_g1:444	si_s420	TRINITY_DN2692_c0_g1	433	453	444	-23.70	-16.90	0.713080168776371	8.5	1-5,453-449;7-16,447-438	6-6,448-448[SIL];17-21,437-433[UP3]	.....((((((((((.(((((&))))).)))))))))).....	UUCCCGUUGUAUAGAUUGUGU&ACAUAUUCUAUAUAACAAUAA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s420_TRINITY_DN2692_c0_g1_444_TPlot.pdf
TRINITY_DN2692_c0_g1:445	si_s419	TRINITY_DN2692_c0_g1	434	454	445	-25.60	-17.20	0.671875	8.5	2-6,453-449;8-17,447-438	1-1,454-454[UP5];7-7,448-448[SIL];18-21,437-434[UP3]	....((((((((((.(((((.&.))))).))))))))))....	UCCCGUUGUAUAGAUUGUGUA&GACAUAUUCUAUAUAACAAUA	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s419_TRINITY_DN2692_c0_g1_445_TPlot.pdf
TRINITY_DN2693_c0_g1:411	si_a636	TRINITY_DN2693_c0_g1	400	420	411	-26.30	-18.20	0.692015209125475	6.5	2-10,419-411;12-20,409-401	1-1,420-420[UP5];11-11,410-410[SIL];21-21,400-400[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AAUUGCUCAAUAAAAUUGAUC&UGUCGAUUUUUUUGAGUAAUA	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2693_c0_g1_411_TPlot.pdf
TRINITY_DN2693_c0_g1:709	si_a734	TRINITY_DN2693_c0_g1	694	718	709	-42.40	-28.00	0.660377358490566	9.5	1-11,718-708;12-12,706-706;13-15,704-702;16-19,699-696	x-x,707-707[BULt];x-x,705-705[BULt];x-x,701-700[BULt];20-21,695-694[UP3]	..((((..(((.(.(((((((((((&)))))))))))-)-)))--))))..	ACGGCUUGAGGAGUGUAGAGAUGCC&GGCAUCUUUAC-C-CCU--GGCCAU	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN2693_c0_g1_709_TPlot.pdf
TRINITY_DN26946_c0_g1:175	si_a471	TRINITY_DN26946_c0_g1	164	184	175	-21.10	-14.60	0.691943127962085	9.5	4-17,181-168;19-21,166-164	1-3,184-182[UP5];18-18,167-167[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GUACAGCAGUGGUUACAUCCU&AAUAUGUAAUUAUUGUUAUAU	0	0.183820191553404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN26946_c0_g1_175_TPlot.pdf
TRINITY_DN2694_c0_g1:1010	si_a506	TRINITY_DN2694_c0_g1	999	1021	1010	-33.40	-22.40	0.67065868263473	10.5	2-7,1020-1015;8-14,1012-1006;17-19,1003-1001	1-1,1021-1021[UP5];x-x,1014-1013[BULt];15-16,1005-1004[SIL];20-21,1000-999[UP3]	..(((..(((((((..((((((.&.))))))--)))))))..)))..	GAGCAAGCCAAGGAAAGGACGAU&UUCGUCU--UCCUUGGAAUGUAA	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN2694_c0_g1_1010_TPlot.pdf
TRINITY_DN2694_c0_g1:1011	si_a505	TRINITY_DN2694_c0_g1	1000	1022	1011	-33.30	-22.40	0.672672672672673	11.5	3-8,1020-1015;9-15,1012-1006;18-20,1003-1001	1-2,1022-1021[UP5];x-x,1014-1013[BULt];16-17,1005-1004[SIL];21-21,1000-1000[UP3]	.(((..(((((((..((((((..&..))))))--)))))))..))).	AGCAAGCCAAGGAAAGGACGAUG&UUUCGUCU--UCCUUGGAAUGUA	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN2694_c0_g1_1011_TPlot.pdf
TRINITY_DN2694_c0_g1:1012	si_a504	TRINITY_DN2694_c0_g1	1001	1023	1012	-32.90	-21.90	0.665653495440729	12.5	4-9,1020-1015;10-16,1012-1006;19-21,1003-1001	1-3,1023-1021[UP5];x-x,1014-1013[BULt];17-18,1005-1004[SIL]	(((..(((((((..((((((...&...))))))--)))))))..)))	GCAAGCCAAGGAAAGGACGAUGA&UUUUCGUCU--UCCUUGGAAUGU	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN2694_c0_g1_1012_TPlot.pdf
TRINITY_DN2694_c0_g1:1015	si_a503	TRINITY_DN2694_c0_g1	1002	1024	1015	-32.10	-21.10	0.657320872274143	10	1-3,1024-1022;5-10,1020-1015;11-17,1012-1006;20-21,1003-1002	4-4,1021-1021[SIL];x-x,1014-1013[BULt];18-19,1005-1004[SIL]	((..(((((((..((((((.(((&))).))))))--)))))))..))	CAAGCCAAGGAAAGGACGAUGAA&UUUUUCGUCU--UCCUUGGAAUG	3	0.999999997811836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN2694_c0_g1_1015_TPlot.pdf
TRINITY_DN26955_c0_g1:1193	si_a760	TRINITY_DN26955_c0_g1	1179	1203	1193	-31.10	-20.90	0.672025723472669	12	1-7,1203-1197;8-11,1195-1192;12-20,1188-1180	x-x,1196-1196[BULt];x-x,1191-1189[BULt];21-21,1179-1179[UP3]	.(((((((((...((((.(((((((&)))))))-))))---))))))))).	UUCAAUCAAAUCGGACCGUAGAGGA&UCCUUUG-GGUU---UUUGAUUGAU	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN26955_c0_g1_1193_TPlot.pdf
TRINITY_DN26955_c0_g1:1358	si_a472	TRINITY_DN26955_c0_g1	1346	1367	1358	-21.50	-14.50	0.674418604651163	13	4-12,1364-1356;13-20,1354-1347	1-3,1367-1365[UP5];x-x,1355-1355[BULt];21-21,1346-1346[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	AGUAUGACAUGUGGUUGCACGU&AUAUGUAAUUAU-UGUUAUAUA	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN26955_c0_g1_1358_TPlot.pdf
TRINITY_DN26955_c0_g1:1428	si_a72	TRINITY_DN26955_c0_g1	1417	1435	1428	-21.90	-14.80	0.675799086757991	7.5	1-6,1435-1430;9-20,1429-1418	7-8,x-x[BULq];21-21,1417-1417[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	UUAAUGAAGGGCA--UUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999845704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN26955_c0_g1_1428_TPlot.pdf
TRINITY_DN26955_c0_g1:1429	si_a71	TRINITY_DN26955_c0_g1	1418	1436	1429	-23.30	-17.60	0.755364806866953	6	1-7,1436-1430;10-21,1429-1418	8-9,x-x[BULq]	((((((((((((--(((((((&)))))))..))))))))))))	UAAUGAAGGGCA--UUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN26955_c0_g1_1429_TPlot.pdf
TRINITY_DN26955_c0_g1:1430	si_a70	TRINITY_DN26955_c0_g1	1419	1437	1430	-23.90	-17.70	0.740585774058577	5.5	1-8,1437-1430;11-21,1429-1419	9-10,x-x[BULq]	(((((((((((--((((((((&))))))))..)))))))))))	AAUGAAGGGCA--UUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.969343840465523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN26955_c0_g1_1430_TPlot.pdf
TRINITY_DN26955_c0_g1:1458	si_s47	TRINITY_DN26955_c0_g1	1447	1467	1458	-26.30	-17.40	0.661596958174905	14.5	8-20,1460-1448	1-7,1467-1461[UP5];21-21,1447-1447[UP3]	.(((((((((((((.......&.......))))))))))))).	GUAACUUGGAAUCCUCACAAA&AAUAAUUGGAUUUCAAGUUAG	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN26955_c0_g1_1458_TPlot.pdf
TRINITY_DN26955_c0_g1:721	si_s523	TRINITY_DN26955_c0_g1	710	730	721	-24.50	-18.60	0.759183673469388	8	1-14,730-717	15-21,716-710[UP3]	.......((((((((((((((&)))))))))))))).......	GUUGUUCGAUUUCGAAUUGAG&CUUAAUUCGAAAUCAUUUUUG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN26955_c0_g1_721_TPlot.pdf
TRINITY_DN26955_c0_g1:725	si_s519	TRINITY_DN26955_c0_g1	714	734	725	-24.40	-20.30	0.831967213114754	8	3-18,732-717	1-2,734-733[UP5];19-21,716-714[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCGAUUUCGAAUUGAGGAGU&UAUUCUUAAUUCGAAAUCAUU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN26955_c0_g1_725_TPlot.pdf
TRINITY_DN26955_c0_g1:727	si_s517	TRINITY_DN26955_c0_g1	716	736	727	-24.80	-20.70	0.834677419354839	7.5	1-2,736-735;5-20,732-717	3-4,734-733[SIL];21-21,716-716[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	CGAUUUCGAAUUGAGGAGUUG&UAUAUUCUUAAUUCGAAAUCA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s517_TRINITY_DN26955_c0_g1_727_TPlot.pdf
TRINITY_DN2695_c1_g1:162	si_s70	TRINITY_DN2695_c1_g1	151	175	162	-25.80	-18.40	0.713178294573643	8.5	1-3,175-173;4-8,171-167;9-21,163-151	x-x,172-172[BULt];x-x,166-164[BULt]	(((((((((((((...(((((.(((&)))-)))))---)))))))))))))	GGAAGGAAAAAAAAUUAUAGACAGU&ACU-UCUAU---UUUUUUUCUUUCC	4	0.999999998067349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2695_c1_g1_162_TPlot.pdf
TRINITY_DN26961_c0_g1:1266	si_a319	TRINITY_DN26961_c0_g1	1255	1275	1266	-22.40	-16.50	0.736607142857143	9	1-14,1275-1262	15-21,1261-1255[UP3]	.......((((((((((((((&)))))))))))))).......	CCACUACAAAUCAUGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	3	0.999775402880348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN26961_c0_g1_1266_TPlot.pdf
TRINITY_DN26961_c0_g1:1849	si_a410	TRINITY_DN26961_c0_g1	1838	1858	1849	-17.80	-11.70	0.657303370786517	7.5	1-10,1858-1849;12-18,1847-1841	11-11,1848-1848[SIL];19-21,1840-1838[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	GUGAUUUAGAAAUGGACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN26961_c0_g1_1849_TPlot.pdf
TRINITY_DN26961_c0_g1:2110	si_a852	TRINITY_DN26961_c0_g1	2099	2119	2110	-28.80	-19.40	0.673611111111111	7.5	2-11,2118-2109;13-19,2107-2101	1-1,2119-2119[UP5];12-12,2108-2108[SIL];20-21,2100-2099[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	AAGAUUGGACUUUAAGUUGGG&GCUAACUUGAAAUCCAAUUAU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN26961_c0_g1_2110_TPlot.pdf
TRINITY_DN2696_c0_g1:245	si_s69	TRINITY_DN2696_c0_g1	232	254	245	-23.40	-16.00	0.683760683760684	14	3-11,252-244;12-21,241-232	1-2,254-253[UP5];x-x,243-242[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	GAAAGAAGGGUCGGGUGGAGGAA&AACUUCUAUUU--UUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2696_c0_g1_245_TPlot.pdf
TRINITY_DN2696_c0_g1:261	si_s77	TRINITY_DN2696_c0_g1	249	270	261	-25.50	-16.70	0.654901960784314	5.5	1-12,270-259;13-13,257-257;15-21,255-249	x-x,258-258[BULt];14-14,256-256[SIL]	(((((((.(.((((((((((((&))))))))))))-).)))))))	GAGGAAAAGCAAAGAAGAAGAA&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2696_c0_g1_261_TPlot.pdf
TRINITY_DN2696_c0_g1:269	si_s87	TRINITY_DN2696_c0_g1	255	284	269	-32.90	-21.40	0.650455927051672	15	1-7,284-278;8-17,271-262;18-21,258-255	x-x,277-272[BULt];x-x,261-259[BULt]	((((...((((((((((......(((((((&)))))))------))))))))))---))))	AAGCAAAGAAGAAGAAGUGGUCUAAAGGAA&UUCCUUU------CUUCUUCUUC---GCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2696_c0_g1_269_TPlot.pdf
TRINITY_DN2696_c0_g1:270	si_s86	TRINITY_DN2696_c0_g1	256	285	270	-32.90	-21.40	0.650455927051672	15	1-8,285-278;9-18,271-262;19-21,258-256	x-x,277-272[BULt];x-x,261-259[BULt]	(((...((((((((((......((((((((&))))))))------))))))))))---)))	AGCAAAGAAGAAGAAGUGGUCUAAAGGAAA&UUUCCUUU------CUUCUUCUUC---GCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2696_c0_g1_270_TPlot.pdf
TRINITY_DN2696_c0_g1:273	si_s81	TRINITY_DN2696_c0_g1	261	285	273	-28.90	-19.60	0.678200692041523	10	1-8,285-278;9-10,274-273;11-21,271-261	x-x,277-275[BULt];x-x,272-272[BULt]	(((((((((((.((...((((((((&))))))))---))-)))))))))))	AGAAGAAGAAGUGGUCUAAAGGAAA&UUUUCUUU---CC-UUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2696_c0_g1_273_TPlot.pdf
TRINITY_DN2696_c0_g1:274	si_s80	TRINITY_DN2696_c0_g1	262	286	274	-28.20	-19.20	0.680851063829787	10	1-9,286-278;10-11,274-273;12-21,271-262	x-x,277-275[BULt];x-x,272-272[BULt]	((((((((((.((...(((((((((&)))))))))---))-))))))))))	GAAGAAGAAGUGGUCUAAAGGAAAA&UUUUUCUUU---CC-UUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2696_c0_g1_274_TPlot.pdf
TRINITY_DN2696_c0_g1:279	si_s83	TRINITY_DN2696_c0_g1	262	288	279	-30.90	-20.10	0.650485436893204	17	4-11,285-278;12-21,271-262	1-3,288-286[UP5];x-x,277-272[BULt]	((((((((((......((((((((...&...))))))))------))))))))))	GAAGAAGAAGUGGUCUAAAGGAAAAGU&UUCUUUCCUUU------CUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2696_c0_g1_279_TPlot.pdf
TRINITY_DN2696_c0_g1:520	si_s312	TRINITY_DN2696_c0_g1	509	529	520	-29.00	-19.40	0.668965517241379	16	8-21,522-509	1-7,529-523[UP5]	((((((((((((((.......&.......))))))))))))))	UAGCAAGGAGGGCGCUUAUUG&AAAAUUCUGUCCUUCUUGUUA	2	0.999998136245885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2696_c0_g1_520_TPlot.pdf
TRINITY_DN2698_c0_g1:2464	si_a631	TRINITY_DN2698_c0_g1	2453	2473	2464	-25.70	-19.80	0.770428015564202	7.5	4-19,2470-2455	1-3,2473-2471[UP5];20-21,2454-2453[UP3]	..((((((((((((((((...&...))))))))))))))))..	UACAAAGAAAUCGACAUACAA&UAUUAUGUCGAUUUUUUUGAG	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN2698_c0_g1_2464_TPlot.pdf
TRINITY_DN2698_c0_g2:2615	si_s633	TRINITY_DN2698_c0_g2	2601	2624	2615	-37.90	-28.70	0.757255936675462	7	2-18,2623-2607;19-20,2603-2602	1-1,2624-2624[UP5];x-x,2606-2604[BULt];21-21,2601-2601[UP3]	.((...(((((((((((((((((.&.)))))))))))))))))---)).	UGGCGAGCAAACGCCUACGGAGAC&CUUUUCGUAGGCGUUUGC---CCU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2698_c0_g2_2615_TPlot.pdf
TRINITY_DN2698_c0_g2:2620	si_s628	TRINITY_DN2698_c0_g2	2609	2634	2620	-35.40	-26.30	0.742937853107345	14	1-4,2634-2631;6-8,2629-2627;9-21,2621-2609	5-5,2630-2630[SIL];x-x,2626-2622[BULt]	(((((((((((((.....(((.((((&)))).)))-----)))))))))))))	AAACGCCUACGGAGACACGAGCUCGC&GCGAUCUU-----UUCGUAGGCGUUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN2698_c0_g2_2620_TPlot.pdf
TRINITY_DN2698_c0_g2:3429	si_s628	TRINITY_DN2698_c0_g2	3416	3438	3429	-35.40	-23.50	0.663841807909605	6	2-13,3437-3426;15-17,3423-3421;18-21,3419-3416	1-1,3438-3438[UP5];14-14,3425-3424[AILt];x-x,3420-3420[BULt]	((((.(((..((((((((((((.&.))))))))))))-.)))-))))	GAGCAGCUGAGCGAAAAGAUCGA&GCGAUCUUUUCGU-AGGC-GUUU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN2698_c0_g2_3429_TPlot.pdf
TRINITY_DN2699_c0_g1:1472	si_a547	TRINITY_DN2699_c0_g1	1461	1481	1472	-26.90	-18.30	0.680297397769517	6	1-10,1481-1472;12-17,1470-1465;19-21,1463-1461	11-11,1471-1471[SIL];18-18,1464-1464[SIL]	(((.((((((.((((((((((&)))))))))).)))))).)))	GGAAAAAGAAUUGGAUUGGAU&GUUCAAUCUAUUUCUUUAUCU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN2699_c0_g1_1472_TPlot.pdf
TRINITY_DN2699_c0_g1:184	si_a547	TRINITY_DN2699_c0_g1	173	193	184	-26.90	-18.30	0.680297397769517	6	1-10,193-184;12-17,182-177;19-21,175-173	11-11,183-183[SIL];18-18,176-176[SIL]	(((.((((((.((((((((((&)))))))))).)))))).)))	GGAAAAAGAAUUGGAUUGGAU&GUUCAAUCUAUUUCUUUAUCU	2	0.985472190984285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN2699_c0_g1_184_TPlot.pdf
TRINITY_DN2699_c0_g1:186	si_a545	TRINITY_DN2699_c0_g1	175	195	186	-28.10	-18.60	0.661921708185053	7	1-12,195-184;14-19,182-177	13-13,183-183[SIL];20-21,176-175[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AAAAAGAAUUGGAUUGGAUUG&CGGUUCAAUCUAUUUCUUUAU	4	0.999934925752249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN2699_c0_g1_186_TPlot.pdf
TRINITY_DN2699_c0_g1:2002	si_s633	TRINITY_DN2699_c0_g1	1991	2012	2002	-37.90	-25.60	0.675461741424802	9	1-6,2012-2007;7-15,2005-1997;17-20,1995-1992	x-x,2006-2006[BULt];16-16,1996-1996[SIL];21-21,1991-1991[UP3]	.((((.(((((((((.((((((&))))))-))))))))).)))).	UGGGUUAGCGCUUGCAGAAGGG&CUUUUC-GUAGGCGUUUGCCCU	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2699_c0_g1_2002_TPlot.pdf
TRINITY_DN2699_c0_g1:2003	si_s632	TRINITY_DN2699_c0_g1	1992	2013	2003	-38.20	-26.60	0.696335078534031	8	1-7,2013-2007;8-16,2005-1997;18-21,1995-1992	x-x,2006-2006[BULt];17-17,1996-1996[SIL]	((((.(((((((((.(((((((&)))))))-))))))))).))))	GGGUUAGCGCUUGCAGAAGGGA&UCUUUUC-GUAGGCGUUUGCCC	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN2699_c0_g1_2003_TPlot.pdf
TRINITY_DN2699_c0_g1:2004	si_s631	TRINITY_DN2699_c0_g1	1993	2014	2004	-36.00	-24.80	0.688888888888889	8	1-8,2014-2007;9-17,2005-1997;19-21,1995-1993	x-x,2006-2006[BULt];18-18,1996-1996[SIL]	(((.(((((((((.((((((((&))))))))-))))))))).)))	GGUUAGCGCUUGCAGAAGGGAU&AUCUUUUC-GUAGGCGUUUGCC	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN2699_c0_g1_2004_TPlot.pdf
TRINITY_DN2699_c0_g1:2300	si_s257	TRINITY_DN2699_c0_g1	2290	2309	2300	-28.30	-18.70	0.660777385159011	5	1-12,2309-2298;15-18,2296-2293	13-14,2297-2297[AILq];19-21,2292-2290[UP3]	...((((.-((((((((((((&))))))))))))..))))...	AGCUUUGU-UAAUAUAUCGGG&CCCGAUAUAUUACUCAAAAAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s257_TRINITY_DN2699_c0_g1_2300_TPlot.pdf
TRINITY_DN2699_c0_g1:2301	si_s256	TRINITY_DN2699_c0_g1	2291	2310	2301	-29.30	-20.10	0.686006825938567	4	1-13,2310-2298;16-19,2296-2293	14-15,2297-2297[AILq];20-21,2292-2291[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	GCUUUGU-UAAUAUAUCGGGA&UCCCGAUAUAUUACUCAAAAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s256_TRINITY_DN2699_c0_g1_2301_TPlot.pdf
TRINITY_DN2699_c0_g1:239	si_s72	TRINITY_DN2699_c0_g1	228	248	239	-24.10	-16.80	0.697095435684647	8	1-9,248-240;11-18,238-231	10-10,239-239[SIL];19-21,230-228[UP3]	...((((((((.(((((((((&))))))))).))))))))...	ACAGAAAGAAAUGAGAUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2699_c0_g1_239_TPlot.pdf
TRINITY_DN2699_c0_g1:2656	si_s466	TRINITY_DN2699_c0_g1	2645	2665	2656	-36.40	-23.80	0.653846153846154	8.5	1-4,2665-2662;6-6,2660-2660;9-20,2657-2646	5-5,2661-2661[SIL];7-8,2659-2658[SIL];21-21,2645-2645[UP3]	.((((((((((((..(.((((&)))).)..)))))))))))).	CGGAUUCGUUGGAGUUCGGAU&AUCUCAUAUCCAACGGAUCCU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s466_TRINITY_DN2699_c0_g1_2656_TPlot.pdf
TRINITY_DN2699_c0_g1:2657	si_s465	TRINITY_DN2699_c0_g1	2646	2666	2657	-36.10	-24.00	0.664819944598338	8	1-5,2666-2662;7-7,2660-2660;10-21,2657-2646	6-6,2661-2661[SIL];8-9,2659-2658[SIL]	((((((((((((..(.(((((&))))).)..))))))))))))	GGAUUCGUUGGAGUUCGGAUG&UAUCUCAUAUCCAACGGAUCC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s465_TRINITY_DN2699_c0_g1_2657_TPlot.pdf
TRINITY_DN2699_c0_g1:2658	si_s464	TRINITY_DN2699_c0_g1	2647	2667	2658	-33.80	-22.20	0.656804733727811	8.5	1-6,2667-2662;8-8,2660-2660;11-21,2657-2647	7-7,2661-2661[SIL];9-10,2659-2658[SIL]	(((((((((((..(.((((((&)))))).)..)))))))))))	GAUUCGUUGGAGUUCGGAUGA&UUAUCUCAUAUCCAACGGAUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s464_TRINITY_DN2699_c0_g1_2658_TPlot.pdf
TRINITY_DN2699_c0_g1:3026	si_a410	TRINITY_DN2699_c0_g1	3015	3035	3026	-17.80	-12.20	0.685393258426966	8	1-14,3035-3022	15-21,3021-3015[UP3]	.......((((((((((((((&)))))))))))))).......	UUGACCAAAAUAUGAACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999998600197197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2699_c0_g1_3026_TPlot.pdf
TRINITY_DN2699_c0_g1:3273	si_a454	TRINITY_DN2699_c0_g1	3262	3282	3273	-21.30	-15.30	0.71830985915493	8.5	4-19,3279-3264	1-3,3282-3280[UP5];20-21,3263-3262[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUUUAUGUAUAAUAACAAAAU&UAAUUGUUGUUAUAUAUAAUA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN2699_c0_g1_3273_TPlot.pdf
TRINITY_DN269_c0_g1:1065	si_s74	TRINITY_DN269_c0_g1	1054	1074	1065	-25.00	-17.80	0.712	10.5	5-20,1070-1055	1-4,1074-1071[UP5];21-21,1054-1054[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGGAGGAGAGAAAAGAACAGA&CUAUUUUUUUUCUUUCCUUUC	3	0.99999999999885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN269_c0_g1_1065_TPlot.pdf
TRINITY_DN26_c3_g2:490	si_a702	TRINITY_DN26_c3_g2	479	498	490	-30.80	-20.30	0.659090909090909	8.5	1-9,498-490;11-17,489-483	10-10,x-x[BULq];18-21,482-479[UP3]	....(((((((-(((((((((&))))))))).)))))))....	UGAAUUGGGGU-UGCCAGUUG&CAACUGGUACAUUCCAAAAUA	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN26_c3_g2_490_TPlot.pdf
TRINITY_DN2700_c0_g1:599	si_a140	TRINITY_DN2700_c0_g1	586	609	599	-25.20	-16.40	0.650793650793651	9.5	1-6,609-604;8-12,601-597;13-20,594-587	7-7,603-602[AILt];x-x,596-595[BULt];21-21,586-586[UP3]	.((((((((..(((((..((((((&))))))-.)))))--)))))))).	CAAGCAACACGACGAUGAAAUUAC&GUAAUU-AAUCGU--UGUUGUUUU	2	0.999996304444132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN2700_c0_g1_599_TPlot.pdf
TRINITY_DN2700_c0_g1:600	si_a139	TRINITY_DN2700_c0_g1	587	610	600	-25.90	-17.80	0.687258687258687	6.5	1-7,610-604;9-13,601-597;14-21,594-587	8-8,603-602[AILt];x-x,596-595[BULt]	((((((((..(((((..(((((((&)))))))-.)))))--))))))))	AAGCAACACGACGAUGAAAUUACU&AGUAAUU-AAUCGU--UGUUGUUU	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN2700_c0_g1_600_TPlot.pdf
TRINITY_DN2700_c0_g1:601	si_a138	TRINITY_DN2700_c0_g1	588	611	601	-26.30	-17.80	0.67680608365019	7	1-8,611-604;10-14,601-597;15-21,594-588	9-9,603-602[AILt];x-x,596-595[BULt]	(((((((..(((((..((((((((&))))))))-.)))))--)))))))	AGCAACACGACGAUGAAAUUACUG&UAGUAAUU-AAUCGU--UGUUGUU	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN2700_c0_g1_601_TPlot.pdf
TRINITY_DN2700_c0_g1:606	si_a134	TRINITY_DN2700_c0_g1	594	615	606	-28.20	-18.40	0.652482269503546	8.5	1-2,615-614;5-12,611-604;14-21,601-594	3-4,613-612[SIL];13-13,603-602[AILt]	((((((((..((((((((..((&))..))))))))-.))))))))	ACGACGAUGAAAUUACUGCAGC&GCAAUAGUAAUU-AAUCGUUGU	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN2700_c0_g1_606_TPlot.pdf
TRINITY_DN2700_c0_g1:686	si_s79	TRINITY_DN2700_c0_g1	669	695	686	-26.20	-18.70	0.713740458015267	10	2-13,694-683;14-19,676-671	1-1,695-695[UP5];x-x,682-677[BULt];20-21,670-669[UP3]	..((((((......((((((((((((.&.))))))))))))------))))))..	UUGAAGAAAUCGUUAGGAAAGAGAAAG&UUUUUUCUUUCCU------UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2700_c0_g1_686_TPlot.pdf
TRINITY_DN2700_c0_g1:692	si_s73	TRINITY_DN2700_c0_g1	681	706	692	-24.00	-17.60	0.733333333333333	14	1-4,706-703;5-19,697-683	x-x,702-698[BULt];20-21,682-681[UP3]	..(((((((((((((((.....((((&))))-----)))))))))))))))..	UUAGGAAAGAGAAAGAACAAUCUAGA&UCUA-----UUUUUUUUCUUUCCUUU	3	0.999999999987715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2700_c0_g1_692_TPlot.pdf
TRINITY_DN2700_c0_g1:694	si_s71	TRINITY_DN2700_c0_g1	683	708	694	-25.70	-18.40	0.715953307392996	12.5	2-6,707-703;7-21,697-683	1-1,708-708[UP5];x-x,702-698[BULt]	(((((((((((((((.....(((((.&.)))))-----)))))))))))))))	AGGAAAGAGAAAGAACAAUCUAGAAC&CUUCUA-----UUUUUUUUCUUUCCU	4	0.999999999999344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2700_c0_g1_694_TPlot.pdf
TRINITY_DN2700_c0_g1:695	si_s70	TRINITY_DN2700_c0_g1	684	709	695	-25.80	-17.30	0.670542635658915	14.5	3-7,707-703;8-21,697-684	1-2,709-708[UP5];x-x,702-698[BULt]	((((((((((((((.....(((((..&..)))))-----))))))))))))))	GGAAAGAGAAAGAACAAUCUAGAACC&ACUUCUA-----UUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2700_c0_g1_695_TPlot.pdf
TRINITY_DN2700_c0_g1:96	si_a505	TRINITY_DN2700_c0_g1	85	104	96	-33.30	-22.90	0.687687687687688	5.5	1-6,104-99;8-21,98-85	7-7,x-x[BULq]	((((((((((((((-((((((&)))))).))))))))))))))	UACAUUCUAGGGAA-AUGAGA&UUUCGUCUUCCUUGGAAUGUA	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN2700_c0_g1_96_TPlot.pdf
TRINITY_DN2700_c0_g1:98	si_a503	TRINITY_DN2700_c0_g1	87	106	98	-32.10	-21.30	0.663551401869159	6	2-8,105-99;10-21,98-87	1-1,106-106[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	CAUUCUAGGGAA-AUGAGAAU&UUUUUCGUCUUCCUUGGAAUG	4	0.999999989278955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN2700_c0_g1_98_TPlot.pdf
TRINITY_DN27015_c1_g1:2167	si_s898	TRINITY_DN27015_c1_g1	2155	2176	2167	-30.70	-20.60	0.671009771986971	6.5	1-13,2176-2164;14-18,2162-2158	x-x,2163-2163[BULt];19-21,2157-2155[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	CAGGAGGUAUGAAGAGAAAGUU&GGCUUUCUCUUCA-AUUUCAAU	4	0.999999708515712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN27015_c1_g1_2167_TPlot.pdf
TRINITY_DN27015_c1_g1:2175	si_s890	TRINITY_DN27015_c1_g1	2164	2185	2175	-29.50	-20.00	0.677966101694915	9	3-8,2183-2178;10-21,2175-2164	1-2,2185-2184[UP5];9-9,2177-2176[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	UGAAGAGAAAGUUGUGUUUAGG&AAUAAAUA-GGCUUUCUCUUCA	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN27015_c1_g1_2175_TPlot.pdf
TRINITY_DN27015_c4_g1:124	si_s93	TRINITY_DN27015_c4_g1	113	133	124	-34.80	-22.90	0.658045977011494	4.5	1-11,133-123;12-15,121-118;18-21,116-113	x-x,122-122[BULt];16-17,117-117[AILq]	((((.-((((.(((((((((((&)))))))))))-))))..))))	GAUCA-AAGCAGAAGAAGAAGA&UCUUCUUCUUC-GCUUCGGAUU	4	0.999999999999751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN27015_c4_g1_124_TPlot.pdf
TRINITY_DN2701_c0_g1:2358	si_s797	TRINITY_DN2701_c0_g1	2347	2369	2358	-30.00	-20.36	0.678666666666667	13.5	1-6,2369-2364;10-20,2358-2348	7-9,2363-2359[AILt];21-21,2347-2347[UP3]	.(((((((((((.....((((((&))))))--...))))))))))).	CAGCGGAGAUAACGCCGGCGAGU&GCUCGU--AUUUUAUCUUCGUUA	4	0.999991392983814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2701_c0_g1_2358_TPlot.pdf
TRINITY_DN2701_c0_g1:3643	si_s455	TRINITY_DN2701_c0_g1	3631	3652	3643	-27.30	-18.10	0.663003663003663	8	1-7,3652-3646;10-13,3643-3640;14-20,3638-3632	8-9,3645-3644[SIL];x-x,3639-3639[BULt];21-21,3631-3631[UP3]	.(((((((.((((..(((((((&)))))))..))))-))))))).	AGUAUGAGUAUGAGGGUUGUUG&UAACAACAAUUAU-CUCAUAUC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s455_TRINITY_DN2701_c0_g1_3643_TPlot.pdf
TRINITY_DN2701_c0_g1:3647	si_s454	TRINITY_DN2701_c0_g1	3638	3656	3647	-25.50	-19.40	0.76078431372549	6	1-11,3656-3646;14-21,3645-3638	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	GUAUGAGG--GUUGUUGUUGU&AUAACAACAAUUAUCUCAUAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN2701_c0_g1_3647_TPlot.pdf
TRINITY_DN2701_c0_g1:3649	si_s452	TRINITY_DN2701_c0_g1	3640	3658	3649	-25.50	-18.00	0.705882352941177	5	2-13,3657-3646;16-21,3645-3640	1-1,3658-3658[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	AUGAGG--GUUGUUGUUGUAG&AUAUAACAACAAUUAUCUCAU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s452_TRINITY_DN2701_c0_g1_3649_TPlot.pdf
TRINITY_DN2701_c0_g1:3650	si_s451	TRINITY_DN2701_c0_g1	3641	3659	3650	-25.70	-17.00	0.66147859922179	7	3-14,3657-3646;17-21,3645-3641	1-2,3659-3658[UP5];15-16,x-x[BULq]	(((((--((((((((((((..&..))))))))))))..)))))	UGAGG--GUUGUUGUUGUAGU&UAUAUAACAACAAUUAUCUCA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s451_TRINITY_DN2701_c0_g1_3650_TPlot.pdf
TRINITY_DN2702_c1_g1:1032	si_s69	TRINITY_DN2702_c1_g1	1021	1041	1032	-23.40	-17.70	0.756410256410256	8	3-7,1039-1035;9-21,1033-1021	1-2,1041-1040[UP5];8-8,1034-1034[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GGAAGAAGAGGAACAGAAGCU&AACUUCUAUUUUUUUUCUUUC	4	0.999999610844452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2702_c1_g1_1032_TPlot.pdf
TRINITY_DN2703_c0_g1:1560	si_s22	TRINITY_DN2703_c0_g1	1545	1569	1560	-26.70	-17.96	0.672659176029963	9	1-13,1569-1557;16-21,1550-1545	14-15,1556-1551[AILt]	((((((......(((((((((((((&)))))))))))))----..))))))	AUUUAGAAAUAAGCAAUCAGUGUGG&CUAUAUUGAUUGC----AACUAAAU	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN2703_c0_g1_1560_TPlot.pdf
TRINITY_DN2703_c1_g2:2885	si_s68	TRINITY_DN2703_c1_g2	2874	2894	2885	-23.10	-20.20	0.874458874458874	5.5	3-21,2892-2874	1-2,2894-2893[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AAGGAGGAAAAAUAGGAGUAG&CAACUUCUAUUUUUUUUCUUU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2703_c1_g2_2885_TPlot.pdf
TRINITY_DN2704_c0_g1:150	si_s33	TRINITY_DN2704_c0_g1	139	159	150	-24.10	-16.80	0.697095435684647	9	1-6,159-154;9-17,151-143	7-8,153-152[SIL];18-21,142-139[UP3]	....(((((((((..((((((&))))))..)))))))))....	CGAAAUUAAAGAUAAGGUUGC&GCAACUAAAUCUUUAAUAAUU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN2704_c0_g1_150_TPlot.pdf
TRINITY_DN2704_c0_g1:957	si_a793	TRINITY_DN2704_c0_g1	944	966	957	-28.50	-19.90	0.698245614035088	7.5	2-15,965-952;16-19,949-946	1-1,966-966[UP5];x-x,951-950[BULt];20-21,945-944[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	AUGGGUAAUGGAAAAUGGAGAAC&UUUUUCUAUUUUCCA--AUCCGA	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN2704_c0_g1_957_TPlot.pdf
TRINITY_DN2704_c0_g1:958	si_a792	TRINITY_DN2704_c0_g1	945	967	958	-27.60	-19.90	0.721014492753623	8.5	3-16,965-952;17-20,949-946	1-2,967-966[UP5];x-x,951-950[BULt];21-21,945-945[UP3]	.((((..((((((((((((((..&..))))))))))))))--)))).	UGGGUAAUGGAAAAUGGAGAACC&AUUUUUCUAUUUUCCA--AUCCG	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN2704_c0_g1_958_TPlot.pdf
TRINITY_DN2704_c0_g1:959	si_a791	TRINITY_DN2704_c0_g1	946	968	959	-26.50	-19.20	0.724528301886792	9.5	4-17,965-952;18-21,949-946	1-3,968-966[UP5];x-x,951-950[BULt]	((((..((((((((((((((...&...))))))))))))))--))))	GGGUAAUGGAAAAUGGAGAACCA&UAUUUUUCUAUUUUCCA--AUCC	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN2704_c0_g1_959_TPlot.pdf
TRINITY_DN2704_c0_g1:962	si_a788	TRINITY_DN2704_c0_g1	951	971	962	-24.80	-16.30	0.657258064516129	14	7-20,965-952	1-6,971-966[UP5];21-21,951-951[UP3]	.((((((((((((((......&......)))))))))))))).	AUGGAAAAUGGAGAACCAGCU&UUCUAUUUUUCUAUUUUCCAA	2	0.999999999811255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN2704_c0_g1_962_TPlot.pdf
TRINITY_DN2705_c0_g1:1319	si_a112	TRINITY_DN2705_c0_g1	1307	1328	1319	-26.20	-17.50	0.66793893129771	12.5	5-11,1324-1318;12-19,1316-1309	1-4,1328-1325[UP5];x-x,1317-1317[BULt];20-21,1308-1307[UP3]	..((((((((.(((((((....&....)))))))-))))))))..	UCGGGACAAGACUCGUAUGUCG&UAAAAUACGAG-CUUGUUUUAU	4	0.999907570240935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN2705_c0_g1_1319_TPlot.pdf
TRINITY_DN2705_c0_g1:1320	si_a111	TRINITY_DN2705_c0_g1	1308	1329	1320	-26.20	-17.50	0.66793893129771	13.5	6-12,1324-1318;13-20,1316-1309	1-5,1329-1325[UP5];x-x,1317-1317[BULt];21-21,1308-1308[UP3]	.((((((((.(((((((.....&.....)))))))-)))))))).	CGGGACAAGACUCGUAUGUCGC&AUAAAAUACGAG-CUUGUUUUA	2	0.993767817732346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN2705_c0_g1_1320_TPlot.pdf
TRINITY_DN27060_c0_g1:505	si_s79	TRINITY_DN27060_c0_g1	493	514	505	-26.20	-17.50	0.66793893129771	7.5	1-8,514-507;11-15,504-500;16-21,498-493	9-10,506-505[SIL];x-x,499-499[BULt]	((((((.(((((..((((((((&))))))))..)))))-))))))	AAGAAGUAAAGGCUAGAAGGAG&UUUUUUCUUUCCUUU-CUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN27060_c0_g1_505_TPlot.pdf
TRINITY_DN2707_c0_g1:1005	si_a895	TRINITY_DN2707_c0_g1	994	1014	1005	-21.70	-14.80	0.682027649769585	7.5	4-19,1011-996	1-3,1014-1012[UP5];20-21,995-994[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUUAUUAUUUAUUAUUACCAA&AUAGUAAUAAUAAGUAAUAUA	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN2707_c0_g1_1005_TPlot.pdf
TRINITY_DN2707_c0_g1:1007	si_a893	TRINITY_DN2707_c0_g1	996	1016	1007	-21.70	-14.70	0.67741935483871	9.5	6-21,1011-996	1-5,1016-1012[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAUUAUUUAUUAUUACCAAUU&AUAUAGUAAUAAUAAGUAAUA	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN2707_c0_g1_1007_TPlot.pdf
TRINITY_DN2707_c0_g1:666	si_a344	TRINITY_DN2707_c0_g1	655	676	666	-28.50	-20.00	0.701754385964912	4.5	1-9,676-668;10-14,666-662;17-21,659-655	x-x,667-667[BULt];15-16,661-660[SIL]	(((((..(((((.(((((((((&)))))))))-)))))..)))))	UGGAAAAAAUAUAUUUCGGGAC&GUCCCGAAA-AUAUUAAUUCUA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN2707_c0_g1_666_TPlot.pdf
TRINITY_DN2707_c0_g1:845	si_a329	TRINITY_DN2707_c0_g1	834	854	845	-29.60	-19.30	0.652027027027027	9	3-18,852-837	1-2,854-853[UP5];19-21,836-834[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUUGACAAGGGAUGGAAAACU&AUUUUUUUAUUCCUUGUCCCG	3	0.999999999881406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2707_c0_g1_845_TPlot.pdf
TRINITY_DN27080_c0_g1:369	si_a326	TRINITY_DN27080_c0_g1	355	378	369	-26.20	-18.40	0.702290076335878	8	1-13,378-366;14-21,362-355	x-x,365-363[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	GGCGAGGGCCAGUAAGAAAAUUGU&AUGAUUUUUUUAU---UCCUUGUC	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN27080_c0_g1_369_TPlot.pdf
TRINITY_DN27089_c0_g1:620	si_a768	TRINITY_DN27089_c0_g1	607	629	620	-28.40	-18.58	0.654225352112676	8	3-15,627-615;18-21,610-607	1-2,629-628[UP5];16-17,614-611[AILt]	((((....(((((((((((((..&..)))))))))))))--..))))	AGAGACAGGAAUCAAUCAGAACG&GUUUUUGAUUGAUUC--AACUCU	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN27089_c0_g1_620_TPlot.pdf
TRINITY_DN27093_c0_g2:1037	si_a194	TRINITY_DN27093_c0_g2	1026	1046	1037	-29.40	-20.00	0.680272108843537	9.5	1-11,1046-1036;13-18,1034-1029	12-12,1035-1035[SIL];19-21,1028-1026[UP3]	...((((((.(((((((((((&))))))))))).))))))...	GCAUAUUGGCGGAUGGGGAGA&UUUCCCUGUUCACUAAUAAAU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN27093_c0_g2_1037_TPlot.pdf
TRINITY_DN27093_c0_g2:2271	si_a18	TRINITY_DN27093_c0_g2	2260	2280	2271	-26.30	-17.30	0.657794676806084	9	3-17,2278-2264	1-2,2280-2279[UP5];18-21,2263-2260[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUCAUAAAAAUGAAUGGGCCC&AAGCCUAUUUAUUUUUAGUUC	4	0.999998131673448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN27093_c0_g2_2271_TPlot.pdf
TRINITY_DN27093_c0_g2:2272	si_a17	TRINITY_DN27093_c0_g2	2261	2281	2272	-24.30	-17.30	0.711934156378601	10	4-18,2278-2264	1-3,2281-2279[UP5];19-21,2263-2261[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCAUAAAAAUGAAUGGGCCCU&AAAGCCUAUUUAUUUUUAGUU	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN27093_c0_g2_2272_TPlot.pdf
TRINITY_DN27094_c0_g1:1911	si_a113	TRINITY_DN27094_c0_g1	1900	1920	1911	-26.20	-18.80	0.717557251908397	12	4-17,1917-1904	1-3,1920-1918[UP5];18-21,1903-1900[UP3]	....((((((((((((((...&...))))))))))))))....	UAAUGAGCAAGCUUGUGUGGG&AAAAUACGAGCUUGUUUUAUA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN27094_c0_g1_1911_TPlot.pdf
TRINITY_DN27094_c0_g1:1914	si_a110	TRINITY_DN27094_c0_g1	1903	1923	1914	-27.80	-18.80	0.676258992805755	15	7-20,1917-1904	1-6,1923-1918[UP5];21-21,1903-1903[UP3]	.((((((((((((((......&......)))))))))))))).	UGAGCAAGCUUGUGUGGGAUG&GAUAAAAUACGAGCUUGUUUU	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN27094_c0_g1_1914_TPlot.pdf
TRINITY_DN27097_c0_g1:146	si_s899	TRINITY_DN27097_c0_g1	135	156	146	-28.30	-18.70	0.660777385159011	11.5	1-5,156-152;6-17,150-139	x-x,151-151[BULt];18-21,138-135[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	GCGAGGGGUUGGAGGGCGAGGC&GCUUU-CUCUUCAAUUUCAAUU	2	0.999998894989824	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN27097_c0_g1_146_TPlot.pdf
TRINITY_DN27097_c0_g1:197	si_s635	TRINITY_DN27097_c0_g1	186	206	197	-39.80	-26.50	0.665829145728643	10	4-14,203-193;16-18,191-189;20-21,187-186	1-3,206-204[UP5];15-15,192-192[SIL];19-19,188-188[SIL]	((.(((.(((((((((((...&...))))))))))).))).))	CGCGGGGGGACGUCUGCGUGC&UUUCGUAGGCGUUUGCCCUCG	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN27097_c0_g1_197_TPlot.pdf
TRINITY_DN2709_c0_g1:815	si_a216	TRINITY_DN2709_c0_g1	804	824	815	-28.30	-19.00	0.671378091872792	9.5	1-5,824-820;7-9,818-816;12-21,813-804	6-6,819-819[SIL];10-11,815-814[SIL]	((((((((((..(((.(((((&))))).)))..))))))))))	GAGGCAUGGGCAUAGCUGGUC&GACUAAUUAAACUCAUGUUUC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a216_TRINITY_DN2709_c0_g1_815_TPlot.pdf
TRINITY_DN2709_c0_g1:819	si_a212	TRINITY_DN2709_c0_g1	808	828	819	-28.20	-18.80	0.666666666666667	6.5	1-9,828-820;11-13,818-816;16-21,813-808	10-10,819-819[SIL];14-15,815-814[SIL]	((((((..(((.(((((((((&))))))))).)))..))))))	CAUGGGCAUAGCUGGUCGAUU&AAUCGACUAAUUAAACUCAUG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a212_TRINITY_DN2709_c0_g1_819_TPlot.pdf
TRINITY_DN27102_c0_g1:1077	si_s1	TRINITY_DN27102_c0_g1	1067	1086	1077	-18.70	-14.10	0.754010695187166	6	1-13,1086-1074;15-20,1073-1068	14-14,x-x[BULq];21-21,1067-1067[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	AAGUGAU-AGUGAUAUGGAAA&UUUUUAUAUUACUUAUUAUUA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN27102_c0_g1_1077_TPlot.pdf
TRINITY_DN27104_c0_g2:1263	si_s31	TRINITY_DN27104_c0_g2	1252	1273	1263	-24.80	-16.90	0.681451612903226	8	1-3,1273-1271;4-16,1269-1257	x-x,1270-1270[BULt];17-21,1256-1252[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	UACUGAAAGAUUUGGUUGUCAA&UUG-CAACUAAAUCUUUAAUAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN27104_c0_g2_1263_TPlot.pdf
TRINITY_DN27106_c0_g1:99	si_a138	TRINITY_DN27106_c0_g1	88	108	99	-26.30	-18.60	0.707224334600761	12	7-21,102-88	1-6,108-103[UP5]	(((((((((((((((......&......)))))))))))))))	AGCAACAGCGAUUAACGAAGA&UAGUAAUUAAUCGUUGUUGUU	0	0.0507004586878006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN27106_c0_g1_99_TPlot.pdf
TRINITY_DN27109_c0_g1:1149	si_s376	TRINITY_DN27109_c0_g1	1139	1158	1149	-42.50	-28.30	0.665882352941176	8	2-8,1157-1151;10-12,1149-1147;14-18,1146-1142	1-1,1158-1158[UP5];9-9,1150-1150[SIL];13-13,x-x[BULq];19-21,1141-1139[UP3]	...(((((-(((.(((((((.&.))))))).))).)))))...	UCCGGCGG-CACACGGGCGAC&AUCGCUCGCGUGUCCGCCUUA	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN27109_c0_g1_1149_TPlot.pdf
TRINITY_DN27109_c0_g1:1284	si_s376	TRINITY_DN27109_c0_g1	1273	1293	1284	-42.50	-29.10	0.684705882352941	9.5	1-4,1293-1290;7-11,1287-1283;13-19,1281-1275	5-6,1289-1288[SIL];12-12,1282-1282[SIL];20-21,1274-1273[UP3]	..(((((((.(((((..((((&))))..))))).)))))))..	GCGGGCGGAGGCGCGCUCGAU&AUCGCUCGCGUGUCCGCCUUA	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN27109_c0_g1_1284_TPlot.pdf
TRINITY_DN27109_c0_g1:1285	si_s375	TRINITY_DN27109_c0_g1	1274	1294	1285	-44.10	-30.40	0.689342403628118	8	1-5,1294-1290;8-12,1287-1283;14-20,1281-1275	6-7,1289-1288[SIL];13-13,1282-1282[SIL];21-21,1274-1274[UP3]	.(((((((.(((((..(((((&)))))..))))).))))))).	CGGGCGGAGGCGCGCUCGAUU&GAUCGCUCGCGUGUCCGCCUU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN27109_c0_g1_1285_TPlot.pdf
TRINITY_DN27109_c0_g1:1451	si_a616	TRINITY_DN27109_c0_g1	1441	1460	1451	-34.70	-23.90	0.688760806916426	6	1-6,1460-1455;8-14,1453-1447;16-21,1446-1441	7-7,1454-1454[SIL];15-15,x-x[BULq]	((((((-(((((((.((((((&)))))).))))))).))))))	AUGAUG-GCUUGGUGGAUUGG&CCAAUCGACUAGGCGUAUUAU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a616_TRINITY_DN27109_c0_g1_1451_TPlot.pdf
TRINITY_DN27109_c0_g1:2741	si_a47	TRINITY_DN27109_c0_g1	2725	2751	2741	-41.20	-27.80	0.674757281553398	15.5	1-2,2751-2750;4-12,2747-2739;13-21,2733-2725	3-3,2749-2748[AILt];x-x,2738-2734[BULt]	(((((((((.....(((((((((..((&))-.)))))))))-----)))))))))	CGAGUUGACGCUCUUCCUAGACUCGAC&GU-AGGUCUAGGA-----GUCGACUCG	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN27109_c0_g1_2741_TPlot.pdf
TRINITY_DN2710_c0_g1:454	si_a627	TRINITY_DN2710_c0_g1	441	462	454	-29.50	-20.20	0.684745762711864	6.5	1-6,462-457;9-13,455-451;14-21,448-441	7-8,456-456[AILq];x-x,450-449[BULt]	((((((((..(((((.-((((((&))))))..)))))--))))))))	AAGAAAUCCUGACAUU-UACGCC&GGCGUAUUAUGUC--GAUUUUUU	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN2710_c0_g1_454_TPlot.pdf
TRINITY_DN2710_c0_g1:921	si_a464	TRINITY_DN2710_c0_g1	910	930	921	-19.60	-13.00	0.663265306122449	5	2-16,929-915;18-20,913-911	1-1,930-930[UP5];17-17,914-914[SIL];21-21,910-910[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UAUGUUUAUAUAUUAUGUAUU&UAUAUAUAAUAUGUAAUUAUU	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN2710_c0_g1_921_TPlot.pdf
TRINITY_DN27130_c0_g2:471	si_a146	TRINITY_DN27130_c0_g2	459	481	471	-29.70	-21.30	0.717171717171717	9	2-5,480-477;7-11,474-470;12-21,468-459	1-1,481-481[UP5];6-6,476-475[AILt];x-x,469-469[BULt]	((((((((((.(((((..((((.&.))))-.)))))-))))))))))	GGCCUUGAAGCCAACAUCCGAUG&AAUCG-UUGUUG-UUUUAAGGUC	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN27130_c0_g2_471_TPlot.pdf
TRINITY_DN27137_c0_g2:399	si_s597	TRINITY_DN27137_c0_g2	385	408	399	-28.40	-19.70	0.693661971830986	10	2-10,407-399;11-19,395-387	1-1,408-408[UP5];x-x,398-396[BULt];20-21,386-385[UP3]	..(((((((((...(((((((((.&.)))))))))---)))))))))..	GCAAGAUUCGUAUGUUGGAUUUAA&AUAAAUCCAA---GCGAAUCUUUU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN27137_c0_g2_399_TPlot.pdf
TRINITY_DN27139_c0_g1:720	si_a313	TRINITY_DN27139_c0_g1	709	730	720	-28.70	-18.80	0.655052264808362	8	1-9,730-722;10-14,720-716;16-20,714-710	x-x,721-721[BULt];15-15,715-715[SIL];21-21,709-709[UP3]	.(((((.(((((.(((((((((&)))))))))-))))).))))).	CAAGUUUUGGAUAAGAUCCGGG&CUUGGAUUU-AUCCAUGAUUUU	3	0.999997589863607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN27139_c0_g1_720_TPlot.pdf
TRINITY_DN2713_c0_g1:1142	si_s86	TRINITY_DN2713_c0_g1	1131	1151	1142	-32.90	-22.10	0.671732522796353	7	2-16,1150-1136	1-1,1151-1151[UP5];17-21,1135-1131[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UACAUAGAAGAAGAGAGGAAU&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2713_c0_g1_1142_TPlot.pdf
TRINITY_DN2713_c0_g1:1144	si_s84	TRINITY_DN2713_c0_g1	1133	1153	1144	-32.30	-22.10	0.68421052631579	9	4-18,1150-1136	1-3,1153-1151[UP5];19-21,1135-1133[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAUAGAAGAAGAGAGGAAUAA&UCUUUCCUUUCUUCUUCUUCG	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2713_c0_g1_1144_TPlot.pdf
TRINITY_DN2713_c0_g1:1146	si_s82	TRINITY_DN2713_c0_g1	1135	1155	1146	-28.90	-22.70	0.785467128027682	6	1-3,1155-1153;6-20,1150-1136	4-5,1152-1151[SIL];21-21,1135-1135[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	UAGAAGAAGAGAGGAAUAAAA&UUUCUUUCCUUUCUUCUUCUU	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2713_c0_g1_1146_TPlot.pdf
TRINITY_DN2713_c0_g1:1147	si_s81	TRINITY_DN2713_c0_g1	1136	1156	1147	-28.90	-23.40	0.809688581314879	5	1-4,1156-1153;7-21,1150-1136	5-6,1152-1151[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	AGAAGAAGAGAGGAAUAAAAA&UUUUCUUUCCUUUCUUCUUCU	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2713_c0_g1_1147_TPlot.pdf
TRINITY_DN2713_c0_g1:1148	si_s80	TRINITY_DN2713_c0_g1	1137	1157	1148	-28.20	-22.50	0.797872340425532	5.5	2-5,1156-1153;8-21,1150-1137	1-1,1157-1157[UP5];6-7,1152-1151[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	GAAGAAGAGAGGAAUAAAAAU&UUUUUCUUUCCUUUCUUCUUC	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2713_c0_g1_1148_TPlot.pdf
TRINITY_DN27150_c0_g1:534	si_a148	TRINITY_DN27150_c0_g1	521	543	534	-30.30	-20.00	0.66006600660066	4	1-11,543-533;12-13,531-530;15-16,528-527;17-21,525-521	x-x,532-532[BULt];14-14,529-529[SIL];x-x,526-526[BULt]	(((((.((.((.(((((((((((&)))))))))))-)).))-)))))	UUGACACUAAACAACAACAACGA&UCGUUGUUGUU-UUAAG-GUCAA	4	0.999999772470979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN27150_c0_g1_534_TPlot.pdf
TRINITY_DN2715_c1_g1:143	si_a325	TRINITY_DN2715_c1_g1	131	152	143	-25.90	-17.02	0.657142857142857	9.5	1-3,152-150;5-12,148-141;16-21,136-131	4-4,149-149[SIL];13-15,140-137[AILt]	((((((....((((((((.(((&))).))))))))-...))))))	GCAAGGUGGGAAAGAAAUGGUG&CAUGAUUUUUUU-AUUCCUUGU	4	0.999999932685302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2715_c1_g1_143_TPlot.pdf
TRINITY_DN2715_c1_g1:2014	si_s695	TRINITY_DN2715_c1_g1	2002	2023	2014	-24.70	-16.10	0.651821862348178	8	1-13,2023-2011;14-18,2009-2005	x-x,2010-2010[BULt];19-21,2004-2002[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	AUAGAUAAUAUCGACUGGUUGG&UUAAUUAGUCGAU-UUAUUAGU	2	0.990365583261362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN2715_c1_g1_2014_TPlot.pdf
TRINITY_DN2715_c1_g1:263	si_s72	TRINITY_DN2715_c1_g1	251	273	263	-24.10	-17.40	0.721991701244813	8	1-4,273-270;5-18,268-255;19-21,253-251	x-x,269-269[BULt];x-x,254-254[BULt]	(((.((((((((((((((.((((&))))-))))))))))))))-)))	GAGAGAGAGAAAGGAAGUAAGGA&UUCU-AUUUUUUUUCUUUC-CUU	4	0.99999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2715_c1_g1_263_TPlot.pdf
TRINITY_DN27164_c0_g1:1476	si_a410	TRINITY_DN27164_c0_g1	1465	1485	1476	-17.80	-11.60	0.651685393258427	12	1-14,1485-1472	15-21,1471-1465[UP3]	.......((((((((((((((&)))))))))))))).......	AAUCAGAAAAUGUGGACGAGA&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN27164_c0_g1_1476_TPlot.pdf
TRINITY_DN27164_c0_g1:2084	si_s191	TRINITY_DN27164_c0_g1	2073	2093	2084	-26.60	-19.60	0.736842105263158	4.5	1-20,2093-2074	21-21,2073-2073[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AACAUUUUAGAAUAAUUGUUG&UAACGAUUAUUUUGGAAUGUA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN27164_c0_g1_2084_TPlot.pdf
TRINITY_DN27164_c0_g1:880	si_s72	TRINITY_DN27164_c0_g1	869	889	880	-24.10	-16.80	0.697095435684647	4	1-4,889-886;6-16,884-874;18-21,872-869	5-5,885-885[SIL];17-17,873-873[SIL]	((((.(((((((((((.((((&)))).))))))))))).))))	AAGGCAAGAAGAAAAAGAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN27164_c0_g1_880_TPlot.pdf
TRINITY_DN2717_c0_g2:3697	si_s69	TRINITY_DN2717_c0_g2	3686	3706	3697	-23.40	-16.30	0.696581196581197	10.5	4-20,3703-3687	1-3,3706-3704[UP5];21-21,3686-3686[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGAAGAGGAGAAAUGGGAAUU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2717_c0_g2_3697_TPlot.pdf
TRINITY_DN2718_c0_g1:2071	si_s99	TRINITY_DN2718_c0_g1	2061	2080	2071	-34.60	-23.20	0.670520231213873	7.5	1-12,2080-2069;14-16,2068-2066	13-13,x-x[BULq];17-21,2065-2061[UP3]	.....(((-((((((((((((&)))))))))))).))).....	CUACACAG-CCGAAGCGGAGA&UCUUCGCUUCGGAUUGGAAAA	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN2718_c0_g1_2071_TPlot.pdf
TRINITY_DN2718_c0_g1:2072	si_s98	TRINITY_DN2718_c0_g1	2062	2081	2072	-34.70	-23.30	0.671469740634006	7.5	2-13,2080-2069;15-17,2068-2066	1-1,2081-2081[UP5];14-14,x-x[BULq];18-21,2065-2062[UP3]	....(((-((((((((((((.&.)))))))))))).)))....	UACACAG-CCGAAGCGGAGAC&UUCUUCGCUUCGGAUUGGAAA	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN2718_c0_g1_2072_TPlot.pdf
TRINITY_DN2718_c0_g1:2128	si_s99	TRINITY_DN2718_c0_g1	2118	2137	2128	-34.60	-23.20	0.670520231213873	7.5	1-12,2137-2126;14-16,2125-2123	13-13,x-x[BULq];17-21,2122-2118[UP3]	.....(((-((((((((((((&)))))))))))).))).....	CUACACAG-CCGAAGCGGAGA&UCUUCGCUUCGGAUUGGAAAA	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN2718_c0_g1_2128_TPlot.pdf
TRINITY_DN2718_c0_g1:2133	si_s94	TRINITY_DN2718_c0_g1	2123	2145	2133	-35.50	-23.40	0.659154929577465	9.5	1-3,2145-2143;4-5,2141-2140;6-17,2137-2126;19-21,2125-2123	x-x,2142-2142[BULt];x-x,2139-2138[BULt];18-18,x-x[BULq]	(((-((((((((((((..((.(((&)))-))--)))))))))))).)))	CAG-CCGAAGCGGAGACAAGUGAG&CUU-CU--UCUUCGCUUCGGAUUG	4	0.999999995494812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2718_c0_g1_2133_TPlot.pdf
TRINITY_DN2718_c0_g1:2137	si_s90	TRINITY_DN2718_c0_g1	2126	2145	2137	-35.30	-24.60	0.696883852691218	7.5	1-3,2145-2143;5-7,2141-2139;10-21,2137-2126	4-4,2142-2142[SIL];8-9,2138-2138[AILq]	((((((((((((.-(((.(((&))).)))..))))))))))))	CCGAAGCGGAGAC-AAGUGAG&CUUUCUUCUUCUUCGCUUCGG	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2718_c0_g1_2137_TPlot.pdf
TRINITY_DN2718_c0_g1:2138	si_s89	TRINITY_DN2718_c0_g1	2127	2146	2138	-35.30	-23.30	0.660056657223796	7.5	1-4,2146-2143;6-8,2141-2139;11-21,2137-2127	5-5,2142-2142[SIL];9-10,2138-2138[AILq]	(((((((((((.-(((.((((&)))).)))..)))))))))))	CGAAGCGGAGAC-AAGUGAGG&CCUUUCUUCUUCUUCGCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2718_c0_g1_2138_TPlot.pdf
TRINITY_DN2718_c0_g1:2606	si_a386	TRINITY_DN2718_c0_g1	2595	2615	2606	-24.80	-16.40	0.661290322580645	7.5	1-10,2615-2606;12-18,2604-2598;20-20,2596-2596	11-11,2605-2605[SIL];19-19,2597-2597[SIL];21-21,2595-2595[UP3]	.(.(((((((.((((((((((&)))))))))).))))))).).	AUGUGUGUUCCUAGUUCGAGG&UUUCGAAUUAAGAAUAUAGAA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN2718_c0_g1_2606_TPlot.pdf
TRINITY_DN2719_c0_g1:120	si_a537	TRINITY_DN2719_c0_g1	110	130	120	-36.20	-23.82	0.658011049723757	8	1-9,130-122;10-12,120-118;17-21,114-110	x-x,121-121[BULt];13-16,117-115[AILq]	(((((...-(((.(((((((((&)))))))))-)))....)))))	GUAGGGUU-GCCAGAUCGCUCG&CGAGCGAUC-GGUUCAAUCUAU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a537_TRINITY_DN2719_c0_g1_120_TPlot.pdf
TRINITY_DN271_c0_g1:1997	si_a414	TRINITY_DN271_c0_g1	1986	2006	1997	-18.10	-12.80	0.707182320441989	6.5	2-9,2005-1998;11-21,1996-1986	1-1,2006-2006[UP5];10-10,1997-1997[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UAUAUUUGUUUUGAUGUAAGA&GUUUAUAUUUAAAUAAAUAUA	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN271_c0_g1_1997_TPlot.pdf
TRINITY_DN271_c0_g1:2124	si_a406	TRINITY_DN271_c0_g1	2113	2133	2124	-19.80	-13.30	0.671717171717172	8	2-19,2132-2115	1-1,2133-2133[UP5];20-21,2114-2113[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAUAAGUGUAAAUGGAAUAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN271_c0_g1_2124_TPlot.pdf
TRINITY_DN271_c1_g1:431	si_a488	TRINITY_DN271_c1_g1	420	440	431	-26.40	-17.90	0.678030303030303	11.5	4-8,437-433;11-21,430-420	1-3,440-438[UP5];9-10,432-431[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GAGGAGCGACAGUUUUUAAUG&AUAUAGAAUAUGUCGUUUUUC	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN271_c1_g1_431_TPlot.pdf
TRINITY_DN27200_c0_g2:136	si_a79	TRINITY_DN27200_c0_g2	123	145	136	-22.20	-14.70	0.662162162162162	13.5	2-12,144-134;13-19,131-125	1-1,145-145[UP5];x-x,133-132[BULt];20-21,124-123[UP3]	..(((((((..(((((((((((.&.)))))))))))--)))))))..	AAUCUUGAUCGGGUGGGAGGCAG&UUGUUUUUCAUU--AUUAAGAAA	2	0.99998112994115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN27200_c0_g2_136_TPlot.pdf
TRINITY_DN27200_c0_g2:378	si_s795	TRINITY_DN27200_c0_g2	367	387	378	-30.30	-22.50	0.742574257425743	7.5	2-2,386-386;4-20,384-368	1-1,387-387[UP5];3-3,385-385[SIL];21-21,367-367[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	UUGAAGGUGGAAUGCGAGGUC&AAGCUCGUAUUUUAUCUUCGU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN27200_c0_g2_378_TPlot.pdf
TRINITY_DN27200_c0_g2:379	si_s794	TRINITY_DN27200_c0_g2	368	388	379	-31.20	-22.50	0.721153846153846	8	3-3,386-386;5-21,384-368	1-2,388-387[UP5];4-4,385-385[SIL]	(((((((((((((((((.(..&..).)))))))))))))))))	UGAAGGUGGAAUGCGAGGUCA&CAAGCUCGUAUUUUAUCUUCG	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN27200_c0_g2_379_TPlot.pdf
TRINITY_DN27205_c0_g1:26	si_s812	TRINITY_DN27205_c0_g1	14	36	26	-26.40	-18.10	0.685606060606061	6.5	1-4,36-33;5-14,31-22;16-21,19-14	x-x,32-32[BULt];15-15,21-20[AILt]	((((((..((((((((((.((((&))))-))))))))))-.))))))	AUUAUUUCGGGAAAGGUGUACGA&UCGU-UACCUUUUCU-UAAUAAU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN27205_c0_g1_26_TPlot.pdf
TRINITY_DN27208_c0_g1:202	si_s86	TRINITY_DN27208_c0_g1	187	212	202	-32.90	-21.60	0.656534954407295	13	1-5,212-208;6-10,206-202;11-20,197-188	x-x,207-207[BULt];x-x,201-198[BULt];21-21,187-187[UP3]	.((((((((((....(((((.(((((&)))))-)))))----)))))))))).	UGUGGAGAAGAAAAAAGAGAUGGAAA&UUUCC-UUUCU----UCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN27208_c0_g1_202_TPlot.pdf
TRINITY_DN2720_c0_g1:2721	si_a21	TRINITY_DN2720_c0_g1	2710	2730	2721	-24.30	-16.70	0.687242798353909	7	1-15,2730-2716	16-21,2715-2710[UP3]	......(((((((((((((((&)))))))))))))))......	CAACAUCUAAAAAUAAAUGGG&CCUAUUUAUUUUUAGUUCUAA	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN2720_c0_g1_2721_TPlot.pdf
TRINITY_DN2720_c0_g1:2726	si_a16	TRINITY_DN2720_c0_g1	2715	2735	2726	-26.30	-17.30	0.657794676806084	9	4-4,2732-2732;6-20,2730-2716	1-3,2735-2733[UP5];5-5,2731-2731[SIL];21-21,2715-2715[UP3]	.(((((((((((((((.(...&...).))))))))))))))).	UCUAAAAAUAAAUGGGGUGCA&GAAAGCCUAUUUAUUUUUAGU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN2720_c0_g1_2726_TPlot.pdf
TRINITY_DN2720_c0_g1:3171	si_a811	TRINITY_DN2720_c0_g1	3160	3181	3171	-35.30	-24.70	0.69971671388102	6	2-6,3180-3176;7-18,3174-3163	1-1,3181-3181[UP5];x-x,3175-3175[BULt];19-21,3162-3160[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	AUCUUCUUCUUCUUCUGCUUCU&CGAAGC-GAAGAAGAAGAAAGG	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a811_TRINITY_DN2720_c0_g1_3171_TPlot.pdf
TRINITY_DN2720_c1_g2:175	si_a343	TRINITY_DN2720_c1_g2	164	184	175	-28.80	-18.80	0.652777777777778	8.5	4-18,181-167;20-20,165-165	1-3,184-182[UP5];19-19,166-166[SIL];21-21,164-164[UP3]	.(.(((((((((((((((...&...))))))))))))))).).	UGUGUUGGUAUUUUCGGGUGA&UGUCCCGAAAAUAUUAAUUCU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN2720_c1_g2_175_TPlot.pdf
TRINITY_DN2720_c1_g2:351	si_a83	TRINITY_DN2720_c1_g2	331	360	351	-24.50	-17.50	0.714285714285714	20	2-12,359-349;13-21,339-331	1-1,360-360[UP5];x-x,348-340[BULt]	(((((((((.........(((((((((((.&.)))))))))))---------)))))))))	ACCUUUUCUUGAUGUUUCUGAUAAUGAAAC&UUUUCAUUAUUA---------AGAAAAGGU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN2720_c1_g2_351_TPlot.pdf
TRINITY_DN2720_c1_g3:2426	si_s549	TRINITY_DN2720_c1_g3	2415	2435	2426	-20.50	-13.50	0.658536585365854	9	3-17,2433-2419	1-2,2435-2434[UP5];18-21,2418-2415[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUAAGUUAGUUUUAUUUUGGA&AUCAAAAUAGAAUUAAUAUUU	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN2720_c1_g3_2426_TPlot.pdf
TRINITY_DN2723_c0_g1:3158	si_s77	TRINITY_DN2723_c0_g1	3143	3167	3158	-25.50	-17.00	0.666666666666667	8.5	1-12,3167-3156;13-15,3154-3152;16-21,3148-3143	x-x,3155-3155[BULt];x-x,3151-3149[BULt]	((((((...(((.((((((((((((&))))))))))))-)))---))))))	GAAGGAUACGGGUAAAGAAAGAAGG&UUUUUUUUCUUU-CCU---UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2723_c0_g1_3158_TPlot.pdf
TRINITY_DN27243_c0_g2:424	si_s413	TRINITY_DN27243_c0_g2	413	433	424	-24.80	-16.90	0.681451612903226	14.5	7-19,427-415	1-6,433-428[UP5];20-21,414-413[UP3]	..(((((((((((((......&......)))))))))))))..	ACUGUAGAAUGUGUCUUGUCG&AAAAACGACAUAUUCUAUAUA	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN27243_c0_g2_424_TPlot.pdf
TRINITY_DN27243_c0_g2:883	si_s46	TRINITY_DN27243_c0_g2	873	892	883	-25.00	-16.70	0.668	10.5	4-12,889-881;15-21,879-873	1-3,892-890[UP5];13-14,880-880[AILq]	(((((((.-(((((((((...&...)))))))))..)))))))	UGACUUGU-GUCCAGUUGGGG&UAAUAAUUGGAUUUCAAGUUA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN27243_c0_g2_883_TPlot.pdf
TRINITY_DN2724_c0_g1:449	si_a410	TRINITY_DN2724_c0_g1	438	458	449	-17.80	-11.70	0.657303370786517	7.5	2-17,457-442	1-1,458-458[UP5];18-21,441-438[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGUUUUAGGUAUAAAUAAAC&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2724_c0_g1_449_TPlot.pdf
TRINITY_DN27250_c0_g1:176	si_a406	TRINITY_DN27250_c0_g1	165	185	176	-19.80	-13.70	0.691919191919192	7.5	1-12,185-174;14-19,172-167	13-13,173-173[SIL];20-21,166-165[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	UCUGAAUAAGGAUAGAACAAU&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999999872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN27250_c0_g1_176_TPlot.pdf
TRINITY_DN2725_c0_g1:1181	si_s516	TRINITY_DN2725_c0_g1	1170	1190	1181	-25.80	-17.20	0.666666666666667	8	1-3,1190-1188;6-18,1185-1173	4-5,1187-1186[SIL];19-21,1172-1170[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UUAUUCGAAUUAAGAACUUGG&CUAUAUUCUUAAUUCGAAAUC	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN2725_c0_g1_1181_TPlot.pdf
TRINITY_DN2725_c0_g1:1182	si_s515	TRINITY_DN2725_c0_g1	1171	1191	1182	-24.80	-17.20	0.693548387096774	8	2-4,1190-1188;7-19,1185-1173	1-1,1191-1191[UP5];5-6,1187-1186[SIL];20-21,1172-1171[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	UAUUCGAAUUAAGAACUUGGU&UCUAUAUUCUUAAUUCGAAAU	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN2725_c0_g1_1182_TPlot.pdf
TRINITY_DN2725_c0_g1:1183	si_s514	TRINITY_DN2725_c0_g1	1172	1192	1183	-24.80	-17.20	0.693548387096774	9	3-5,1190-1188;8-20,1185-1173	1-2,1192-1191[UP5];6-7,1187-1186[SIL];21-21,1172-1172[UP3]	.(((((((((((((..(((..&..)))..))))))))))))).	AUUCGAAUUAAGAACUUGGUU&UUCUAUAUUCUUAAUUCGAAA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN2725_c0_g1_1183_TPlot.pdf
TRINITY_DN2725_c0_g1:1185	si_s512	TRINITY_DN2725_c0_g1	1174	1194	1185	-24.80	-16.20	0.653225806451613	12	5-7,1190-1188;10-21,1185-1174	1-4,1194-1191[UP5];8-9,1187-1186[SIL]	((((((((((((..(((....&....)))..))))))))))))	UCGAAUUAAGAACUUGGUUAG&AAUUCUAUAUUCUUAAUUCGA	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN2725_c0_g1_1185_TPlot.pdf
TRINITY_DN2725_c0_g1:3728	si_a408	TRINITY_DN2725_c0_g1	3717	3737	3728	-20.10	-13.90	0.691542288557214	8.5	1-17,3737-3721	18-21,3720-3717[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACAAUAGAUGUAAAUAGAAUA&UGUUUUGUUUAUAUUUAAAUA	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2725_c0_g1_3728_TPlot.pdf
TRINITY_DN2725_c0_g1:467	si_a764	TRINITY_DN2725_c0_g1	456	479	467	-28.90	-19.90	0.688581314878893	9.5	1-8,479-472;9-16,468-461;19-21,458-456	x-x,471-469[BULt];17-18,460-459[SIL]	(((..((((((((...((((((((&))))))))---))))))))..)))	UUGUCUCAGUCAAUUCAGACCCAA&UUGGGUUU---UUGAUUGAUUCAA	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2725_c0_g1_467_TPlot.pdf
TRINITY_DN2725_c0_g1:473	si_a761	TRINITY_DN2725_c0_g1	459	482	473	-30.10	-24.40	0.81063122923588	9.5	1-11,482-472;12-19,468-461	x-x,471-469[BULt];20-21,460-459[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	UCUCAGUCAAUUCAGACCCAAAGG&CCUUUGGGUUU---UUGAUUGAUU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN2725_c0_g1_473_TPlot.pdf
TRINITY_DN2725_c0_g1:901	si_a487	TRINITY_DN2725_c0_g1	891	910	901	-24.80	-16.20	0.653225806451613	9.5	5-10,906-901;12-21,900-891	1-4,910-907[UP5];11-11,x-x[BULq]	((((((((((-((((((....&....)))))).))))))))))	GAAAACGACA-AUUCUACAGC&UAUAUAGAAUAUGUCGUUUUU	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN2725_c0_g1_901_TPlot.pdf
TRINITY_DN2725_c0_g2:2053	si_a323	TRINITY_DN2725_c0_g2	2040	2062	2053	-26.80	-18.70	0.697761194029851	9	1-5,2062-2058;7-14,2056-2049;15-21,2046-2040	6-6,2057-2057[SIL];x-x,2048-2047[BULt]	(((((((..((((((((.(((((&))))).))))))))--)))))))	AAGGGGUUGAAGAGAGUGGUGGA&UCCAUGAUUUUUUU--AUUCCUU	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN2725_c0_g2_2053_TPlot.pdf
TRINITY_DN2725_c0_g2:2347	si_a139	TRINITY_DN2725_c0_g2	2336	2356	2347	-25.90	-17.00	0.656370656370656	9	1-8,2356-2349;10-18,2347-2339	9-9,2348-2348[SIL];19-21,2338-2336[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AAUCGACAGCGACUGGUUAUU&AGUAAUUAAUCGUUGUUGUUU	4	0.999990258141989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN2725_c0_g2_2347_TPlot.pdf
TRINITY_DN2725_c0_g2:467	si_a764	TRINITY_DN2725_c0_g2	456	479	467	-28.90	-19.90	0.688581314878893	9.5	1-8,479-472;9-16,468-461;19-21,458-456	x-x,471-469[BULt];17-18,460-459[SIL]	(((..((((((((...((((((((&))))))))---))))))))..)))	UUGUCUCAGUCAAUUCAGACCCAA&UUGGGUUU---UUGAUUGAUUCAA	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2725_c0_g2_467_TPlot.pdf
TRINITY_DN2725_c0_g2:474	si_a760	TRINITY_DN2725_c0_g2	460	483	474	-31.10	-24.40	0.784565916398714	9.5	2-12,482-472;13-20,468-461	1-1,483-483[UP5];x-x,471-469[BULt];21-21,460-460[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	CUCAGUCAAUUCAGACCCAAAGGC&UCCUUUGGGUUU---UUGAUUGAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2725_c0_g2_474_TPlot.pdf
TRINITY_DN2725_c0_g2:888	si_a558	TRINITY_DN2725_c0_g2	877	898	888	-35.40	-24.50	0.692090395480226	8.5	1-9,898-890;11-18,887-880	10-10,889-888[AILt];19-21,879-877[UP3]	...((((((((..(((((((((&)))))))))-.))))))))...	UUCUCAUGGGGCUGAUGAAGAA&UUCUUUAUC-UCCCCGUGAAUC	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN2725_c0_g2_888_TPlot.pdf
TRINITY_DN2725_c0_g2:890	si_a557	TRINITY_DN2725_c0_g2	878	899	890	-33.40	-25.40	0.760479041916168	7.5	1-10,899-890;12-19,887-880	11-11,889-888[AILt];20-21,879-878[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	UCUCAUGGGGCUGAUGAAGAAA&UUUCUUUAUC-UCCCCGUGAAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN2725_c0_g2_890_TPlot.pdf
TRINITY_DN2725_c0_g2:891	si_a556	TRINITY_DN2725_c0_g2	879	900	891	-33.40	-25.40	0.760479041916168	7.5	2-11,899-890;13-20,887-880	1-1,900-900[UP5];12-12,889-888[AILt];21-21,879-879[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	CUCAUGGGGCUGAUGAAGAAAA&AUUUCUUUAUC-UCCCCGUGAA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN2725_c0_g2_891_TPlot.pdf
TRINITY_DN2725_c0_g2:893	si_a554	TRINITY_DN2725_c0_g2	881	902	893	-34.40	-23.00	0.668604651162791	8.5	4-13,899-890;15-21,887-881	1-3,902-900[UP5];14-14,889-888[AILt]	(((((((..((((((((((...&...))))))))))-.)))))))	CAUGGGGCUGAUGAAGAAAAUA&CUAUUUCUUUAUC-UCCCCGUG	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN2725_c0_g2_893_TPlot.pdf
TRINITY_DN2726_c0_g1:657	si_s884	TRINITY_DN2726_c0_g1	646	666	657	-26.30	-17.40	0.661596958174905	5	2-7,665-660;9-20,658-647	1-1,666-666[UP5];8-8,659-659[SIL];21-21,646-646[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AAAAGCUUGUUUACUUUUAGG&ACUAAAAAUAAAUAGGCUUUC	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s884_TRINITY_DN2726_c0_g1_657_TPlot.pdf
TRINITY_DN2727_c0_g1:2986	si_a141	TRINITY_DN2727_c0_g1	2975	2995	2986	-23.80	-17.70	0.743697478991597	11	4-5,2992-2991;8-20,2988-2976	1-3,2995-2993[UP5];6-7,2990-2989[SIL];21-21,2975-2975[UP3]	.(((((((((((((..((...&...))..))))))))))))).	GGAGACAACAACGAGGAAAUA&UAAUUAAUCGUUGUUGUUUUA	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2727_c0_g1_2986_TPlot.pdf
TRINITY_DN2727_c0_g1:320	si_s808	TRINITY_DN2727_c0_g1	309	329	320	-28.60	-26.40	0.923076923076923	5.5	2-19,328-311	1-1,329-329[UP5];20-21,310-309[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAAGGAAAAGGUAGCGAGGAA&AUCUUCGUUACCUUUUCUUAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2727_c0_g1_320_TPlot.pdf
TRINITY_DN2727_c2_g1:12	si_a405	TRINITY_DN2727_c2_g1	1	23	12	-19.80	-13.90	0.702020202020202	7	2-7,22-17;8-19,14-3	1-1,23-23[UP5];x-x,16-15[BULt];20-21,2-1[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	CAAAAUAUAAACAAUUAACAAUA&AAUUGUU--UUGUUUAUAUUUAA	4	0.999999999999106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2727_c2_g1_12_TPlot.pdf
TRINITY_DN27297_c0_g1:263	si_a79	TRINITY_DN27297_c0_g1	252	272	263	-22.20	-15.40	0.693693693693694	8.5	1-15,272-258	16-21,257-252[UP3]	......(((((((((((((((&)))))))))))))))......	UUAAGCGAUAGUGAGAAACAA&UUGUUUUUCAUUAUUAAGAAA	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN27297_c0_g1_263_TPlot.pdf
TRINITY_DN27297_c0_g1:269	si_a73	TRINITY_DN27297_c0_g1	258	278	269	-21.90	-16.70	0.762557077625571	10.5	6-21,273-258	1-5,278-274[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUAGUGAGAAACAAUAUUAC&UUCAAAUUGUUUUUCAUUAUU	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN27297_c0_g1_269_TPlot.pdf
TRINITY_DN27297_c0_g1:270	si_a72	TRINITY_DN27297_c0_g1	259	279	270	-21.90	-15.50	0.707762557077626	12	7-21,273-259	1-6,279-274[UP5]	(((((((((((((((......&......)))))))))))))))	AUAGUGAGAAACAAUAUUACA&UUUCAAAUUGUUUUUCAUUAU	4	0.999996529447133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN27297_c0_g1_270_TPlot.pdf
TRINITY_DN27297_c0_g1:87	si_a763	TRINITY_DN27297_c0_g1	76	96	87	-28.80	-19.10	0.663194444444445	10	5-10,92-87;12-20,85-77	1-4,96-93[UP5];11-11,86-86[SIL];21-21,76-76[UP3]	.(((((((((.((((((....&....)))))).))))))))).	CGAAUCAAUCUAAAACCAAAA&UUUGGGUUUUUGAUUGAUUCA	4	0.99999999839502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN27297_c0_g1_87_TPlot.pdf
TRINITY_DN2729_c0_g1:2663	si_a637	TRINITY_DN2729_c0_g1	2652	2672	2663	-25.80	-17.30	0.670542635658915	9.5	1-8,2672-2665;11-16,2662-2657;19-21,2654-2652	9-10,2664-2663[SIL];17-18,2656-2655[SIL]	(((..((((((..((((((((&))))))))..))))))..)))	AUAGCGCUCAGCUGGAUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.999999983764423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2729_c0_g1_2663_TPlot.pdf
TRINITY_DN2729_c0_g1:2665	si_a635	TRINITY_DN2729_c0_g1	2654	2674	2665	-26.10	-18.60	0.71264367816092	10	1-10,2674-2665;13-18,2662-2657	11-12,2664-2663[SIL];19-21,2656-2654[UP3]	...((((((..((((((((((&))))))))))..))))))...	AGCGCUCAGCUGGAUCGACAU&AUGUCGAUUUUUUUGAGUAAU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2729_c0_g1_2665_TPlot.pdf
TRINITY_DN272_c0_g1:2618	si_s83	TRINITY_DN272_c0_g1	2606	2627	2618	-30.90	-20.50	0.663430420711974	9	4-11,2624-2617;12-20,2615-2607	1-3,2627-2625[UP5];x-x,2616-2616[BULt];21-21,2606-2606[UP3]	.(((((((((.((((((((...&...))))))))-))))))))).	AAAGAAGAAGAAGAGGAAAAGU&UUCUUUCCUUU-CUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN272_c0_g1_2618_TPlot.pdf
TRINITY_DN272_c0_g1:3057	si_a66	TRINITY_DN272_c0_g1	3046	3065	3057	-26.70	-18.00	0.674157303370786	5	1-8,3065-3058;10-12,3057-3055;14-21,3053-3046	9-9,x-x[BULq];13-13,3054-3054[SIL]	((((((((.(((-((((((((&)))))))).))).))))))))	AAGAGCAAAUUG-AAGAAGUG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999938479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN272_c0_g1_3057_TPlot.pdf
TRINITY_DN272_c0_g1:4437	si_a407	TRINITY_DN272_c0_g1	4426	4446	4437	-19.80	-13.90	0.702020202020202	6	1-2,4446-4445;4-19,4443-4428	3-3,4444-4444[SIL];20-21,4427-4426[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	AAUUAGAUGUAAAUAAAAGAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999137702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN272_c0_g1_4437_TPlot.pdf
TRINITY_DN272_c0_g1:4438	si_a406	TRINITY_DN272_c0_g1	4427	4447	4438	-19.80	-13.90	0.702020202020202	6	2-3,4446-4445;5-20,4443-4428	1-1,4447-4447[UP5];4-4,4444-4444[SIL];21-21,4427-4427[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	AUUAGAUGUAAAUAAAAGAAA&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999956901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN272_c0_g1_4438_TPlot.pdf
TRINITY_DN272_c0_g1:4524	si_a639	TRINITY_DN272_c0_g1	4513	4533	4524	-23.60	-17.00	0.720338983050847	6	2-14,4532-4520;16-21,4518-4513	1-1,4533-4533[UP5];15-15,4519-4519[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AUGUAUCGCUCAAAGAAGUUC&CGAUUUUUUUGAGUAAUAUAU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN272_c0_g1_4524_TPlot.pdf
TRINITY_DN272_c0_g1:631	si_s12	TRINITY_DN272_c0_g1	620	640	631	-22.80	-15.40	0.675438596491228	11.5	5-18,636-623	1-4,640-637[UP5];19-21,622-620[UP3]	...((((((((((((((....&....))))))))))))))...	UACCAGUAUAGUAAUGAACGA&CUUAUUAUUACUAUAUUGAUU	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN272_c0_g1_631_TPlot.pdf
TRINITY_DN272_c0_g1:6316	si_a70	TRINITY_DN272_c0_g1	6305	6325	6316	-23.90	-16.60	0.694560669456067	5.5	1-11,6325-6315;13-19,6313-6307	12-12,6314-6314[SIL];20-21,6306-6305[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	ACUGAAAAAAGAUUUGAAAGG&UCUUUCAAAUUGUUUUUCAUU	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN272_c0_g1_6316_TPlot.pdf
TRINITY_DN272_c0_g1:632	si_s11	TRINITY_DN272_c0_g1	621	641	632	-23.60	-15.40	0.652542372881356	12.5	6-19,636-623	1-5,641-637[UP5];20-21,622-621[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACCAGUAUAGUAAUGAACGAU&ACUUAUUAUUACUAUAUUGAU	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN272_c0_g1_632_TPlot.pdf
TRINITY_DN272_c0_g1:714	si_s69	TRINITY_DN272_c0_g1	703	723	714	-23.40	-16.50	0.705128205128205	9	4-20,720-704	1-3,723-721[UP5];21-21,703-703[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGAAGGAAAAAGAUAGGAAAG&AACUUCUAUUUUUUUUCUUUC	2	0.999999999742363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN272_c0_g1_714_TPlot.pdf
TRINITY_DN272_c0_g1:715	si_s68	TRINITY_DN272_c0_g1	704	724	715	-23.10	-16.30	0.705627705627706	10	5-21,720-704	1-4,724-721[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAGGAAAAAGAUAGGAAAGA&CAACUUCUAUUUUUUUUCUUU	2	0.999998041111167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN272_c0_g1_715_TPlot.pdf
TRINITY_DN272_c0_g1:717	si_s82	TRINITY_DN272_c0_g1	702	726	717	-28.90	-20.30	0.70242214532872	7.5	1-10,726-717;12-14,715-713;15-21,708-702	11-11,716-716[SIL];x-x,712-709[BULt]	(((((((....(((.((((((((((&)))))))))).)))----)))))))	AAGAAGGAAAAAGAUAGGAAAGAGA&UUUCUUUCCUUUCU----UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN272_c0_g1_717_TPlot.pdf
TRINITY_DN272_c0_g1:720	si_s79	TRINITY_DN272_c0_g1	702	729	720	-26.20	-17.60	0.67175572519084	13.5	4-13,726-717;14-21,709-702	1-3,729-727[UP5];x-x,716-710[BULt]	((((((((.......((((((((((...&...))))))))))-------))))))))	AAGAAGGAAAAAGAUAGGAAAGAGAUAA&UUUUUUCUUUCCU-------UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN272_c0_g1_720_TPlot.pdf
TRINITY_DN272_c0_g1:722	si_s77	TRINITY_DN272_c0_g1	711	731	722	-25.50	-17.00	0.666666666666667	5.5	1-4,731-728;6-15,726-717;17-20,715-712	5-5,727-727[SIL];16-16,716-716[SIL];21-21,711-711[UP3]	.((((.((((((((((.((((&)))).)))))))))).)))).	AAAGAUAGGAAAGAGAUAAAG&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN272_c0_g1_722_TPlot.pdf
TRINITY_DN2731_c0_g1:644	si_s835	TRINITY_DN2731_c0_g1	634	653	644	-27.70	-18.50	0.667870036101083	5	2-6,652-648;8-18,646-636;20-21,635-634	1-1,653-653[UP5];7-7,647-647[SIL];19-19,x-x[BULq]	((-(((((((((((.(((((.&.))))).))))))))))).))	UC-CUUCUUUCAGAGUGUUUG&AAAACAAUUUGAAAGAAGCGA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s835_TRINITY_DN2731_c0_g1_644_TPlot.pdf
TRINITY_DN27322_c0_g1:427	si_a455	TRINITY_DN27322_c0_g1	416	435	427	-21.10	-14.10	0.66824644549763	7.5	2-7,434-429;9-21,428-416	1-1,435-435[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	AUGUUAUAUGUGG-AGCAAUC&AAUUGUUGUUAUAUAUAAUAU	4	0.999999939286455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN27322_c0_g1_427_TPlot.pdf
TRINITY_DN27325_c0_g1:1047	si_a456	TRINITY_DN27325_c0_g1	1036	1056	1047	-22.80	-16.10	0.706140350877193	8.5	1-15,1056-1042	16-21,1041-1036[UP3]	......(((((((((((((((&)))))))))))))))......	AGACACGUAUAUAGCAACAGU&AUUGUUGUUAUAUAUAAUAUG	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN27325_c0_g1_1047_TPlot.pdf
TRINITY_DN27325_c0_g1:1052	si_a451	TRINITY_DN27325_c0_g1	1041	1061	1052	-23.60	-17.00	0.720338983050847	10	5-20,1057-1042	1-4,1061-1058[UP5];21-21,1041-1041[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGUAUAUAGCAACAGUUCUUA&AGAUAAUUGUUGUUAUAUAUA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN27325_c0_g1_1052_TPlot.pdf
TRINITY_DN27325_c0_g1:1227	si_a778	TRINITY_DN27325_c0_g1	1216	1235	1227	-28.30	-19.30	0.681978798586572	7.5	1-3,1235-1233;5-18,1232-1219	4-4,x-x[BULq];19-21,1218-1216[UP3]	...((((((((((((((-(((&))).))))))))))))))...	AGCAAAUGGAGGAGUUG-GUC&GAUUCAACUCUUCUAUUUUUC	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN27325_c0_g1_1227_TPlot.pdf
TRINITY_DN2732_c0_g1:1089	si_s883	TRINITY_DN2732_c0_g1	1077	1099	1089	-24.30	-16.80	0.691358024691358	5	1-6,1099-1094;7-13,1092-1086;14-20,1084-1078	x-x,1093-1093[BULt];x-x,1085-1085[BULt];21-21,1077-1077[UP3]	.(((((((.(((((((.((((((&))))))-)))))))-))))))).	UAGGCCUGUUUUAUUUAUUAGUU&AACUAA-AAAUAAA-UAGGCUUU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN2732_c0_g1_1089_TPlot.pdf
TRINITY_DN2732_c0_g1:1090	si_s882	TRINITY_DN2732_c0_g1	1078	1100	1090	-26.30	-17.10	0.650190114068441	5	2-7,1099-1094;8-14,1092-1086;15-21,1084-1078	1-1,1100-1100[UP5];x-x,1093-1093[BULt];x-x,1085-1085[BULt]	(((((((.(((((((.((((((.&.))))))-)))))))-)))))))	AGGCCUGUUUUAUUUAUUAGUUA&GAACUAA-AAAUAAA-UAGGCUU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN2732_c0_g1_1090_TPlot.pdf
TRINITY_DN2732_c0_g1:734	si_a640	TRINITY_DN2732_c0_g1	723	742	734	-24.10	-16.80	0.697095435684647	9	1-8,742-735;10-18,734-726	9-9,x-x[BULq];19-21,725-723[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	CUGAUGUUGCUC-AGAGAGUC&GAUUUUUUUGAGUAAUAUAUC	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN2732_c0_g1_734_TPlot.pdf
TRINITY_DN27331_c0_g1:140	si_a595	TRINITY_DN27331_c0_g1	129	149	140	-30.30	-20.90	0.68976897689769	9	3-12,147-138;14-18,136-132	1-2,149-148[UP5];13-13,137-137[SIL];19-21,131-129[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	UAGUGUGGUAGUUCUGUCCGC&AAGGACAGAAUUUUCGCAAUU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN27331_c0_g1_140_TPlot.pdf
TRINITY_DN27331_c0_g1:144	si_a591	TRINITY_DN27331_c0_g1	133	154	144	-33.80	-22.30	0.659763313609467	7.5	1-5,154-150;7-16,147-138;18-21,136-133	6-6,149-148[AILt];17-17,137-137[SIL]	((((.((((((((((..(((((&)))))-.)))))))))).))))	GUGGUAGUUCUGUCCGCUUUUG&CAAGA-AGGACAGAAUUUUCGC	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN27331_c0_g1_144_TPlot.pdf
TRINITY_DN27331_c0_g1:307	si_a182	TRINITY_DN27331_c0_g1	291	316	307	-31.80	-20.90	0.657232704402516	9.5	1-13,316-304;14-19,298-293	x-x,303-299[BULt];20-21,292-291[UP3]	..((((((.....(((((((((((((&)))))))))))))-----))))))..	AAAGGGAGAAGUUAGAUAUUAUUUGG&CUAGAUAAUAUCU-----UUCCCUGU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN27331_c0_g1_307_TPlot.pdf
TRINITY_DN27331_c0_g1:309	si_a180	TRINITY_DN27331_c0_g1	293	318	309	-32.10	-20.90	0.651090342679128	9.5	2-15,317-304;16-21,298-293	1-1,318-318[UP5];x-x,303-299[BULt]	((((((.....((((((((((((((.&.))))))))))))))-----))))))	AGGGAGAAGUUAGAUAUUAUUUGGGA&GUCUAGAUAAUAUCU-----UUCCCU	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN27331_c0_g1_309_TPlot.pdf
TRINITY_DN27331_c0_g1:637	si_s48	TRINITY_DN27331_c0_g1	623	646	637	-28.80	-19.30	0.670138888888889	7.5	1-14,646-633;18-21,626-623	15-17,632-627[AILt]	((((......((((((((((((((&))))))))))))))---...))))	GCUGCAAUGGUGGAAUCCAAUUAU&AUAAUUGGAUUUCA---AGUUAGC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN27331_c0_g1_637_TPlot.pdf
TRINITY_DN27331_c0_g1:639	si_s46	TRINITY_DN27331_c0_g1	628	648	639	-25.00	-16.80	0.672	8.5	3-16,646-633	1-2,648-647[UP5];17-21,632-628[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAUGGUGGAAUCCAAUUAUGG&UAAUAAUUGGAUUUCAAGUUA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN27331_c0_g1_639_TPlot.pdf
TRINITY_DN27331_c0_g1:641	si_s44	TRINITY_DN27331_c0_g1	630	650	641	-24.70	-16.80	0.680161943319838	10.5	5-18,646-633	1-4,650-647[UP5];19-21,632-630[UP3]	...((((((((((((((....&....))))))))))))))...	UGGUGGAAUCCAAUUAUGGGC&UUUAAUAAUUGGAUUUCAAGU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN27331_c0_g1_641_TPlot.pdf
TRINITY_DN27331_c0_g1:642	si_s43	TRINITY_DN27331_c0_g1	631	651	642	-25.50	-16.80	0.658823529411765	11.5	6-19,646-633	1-5,651-647[UP5];20-21,632-631[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGUGGAAUCCAAUUAUGGGCG&CUUUAAUAAUUGGAUUUCAAG	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN27331_c0_g1_642_TPlot.pdf
TRINITY_DN27331_c0_g1:643	si_s42	TRINITY_DN27331_c0_g1	632	652	643	-24.90	-16.80	0.674698795180723	12.5	7-20,646-633	1-6,652-647[UP5];21-21,632-632[UP3]	.((((((((((((((......&......)))))))))))))).	GUGGAAUCCAAUUAUGGGCGU&UCUUUAAUAAUUGGAUUUCAA	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN27331_c0_g1_643_TPlot.pdf
TRINITY_DN27331_c0_g1:644	si_s41	TRINITY_DN27331_c0_g1	633	653	644	-25.00	-16.60	0.664	13.5	8-21,646-633	1-7,653-647[UP5]	((((((((((((((.......&.......))))))))))))))	UGGAAUCCAAUUAUGGGCGUU&AUCUUUAAUAAUUGGAUUUCA	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN27331_c0_g1_644_TPlot.pdf
TRINITY_DN27331_c0_g1:924	si_s26	TRINITY_DN27331_c0_g1	913	933	924	-26.70	-17.70	0.662921348314607	10.5	1-14,933-920	15-21,919-913[UP3]	.......((((((((((((((&)))))))))))))).......	CAUGCCGUGGUUGCAGUCGGU&AUUGAUUGCAACUAAAUCUUU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN27331_c0_g1_924_TPlot.pdf
TRINITY_DN27331_c0_g1:925	si_s25	TRINITY_DN27331_c0_g1	914	934	925	-27.10	-17.70	0.653136531365314	10.5	2-15,933-920	1-1,934-934[UP5];16-21,919-914[UP3]	......((((((((((((((.&.))))))))))))))......	AUGCCGUGGUUGCAGUCGGUU&UAUUGAUUGCAACUAAAUCUU	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN27331_c0_g1_925_TPlot.pdf
TRINITY_DN27331_c0_g1:927	si_s23	TRINITY_DN27331_c0_g1	916	936	927	-27.00	-17.70	0.655555555555556	12.5	4-17,933-920	1-3,936-934[UP5];18-21,919-916[UP3]	....((((((((((((((...&...))))))))))))))....	GCCGUGGUUGCAGUCGGUUAU&UAUAUUGAUUGCAACUAAAUC	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN27331_c0_g1_927_TPlot.pdf
TRINITY_DN27331_c0_g1:928	si_s22	TRINITY_DN27331_c0_g1	917	938	928	-26.70	-20.10	0.752808988764045	9.5	1-5,938-934;6-18,932-920	x-x,933-933[BULt];19-21,919-917[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	CCGUGGUUGCAGUCGGUUAUGG&CUAUA-UUGAUUGCAACUAAAU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN27331_c0_g1_928_TPlot.pdf
TRINITY_DN27331_c0_g1:931	si_s19	TRINITY_DN27331_c0_g1	920	941	931	-27.80	-22.90	0.823741007194244	7	2-8,940-934;9-21,932-920	1-1,941-941[UP5];x-x,933-933[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	UGGUUGCAGUCGGUUAUGGUAC&UUACUAUA-UUGAUUGCAACUA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN27331_c0_g1_931_TPlot.pdf
TRINITY_DN27331_c0_g1:932	si_s18	TRINITY_DN27331_c0_g1	921	942	932	-27.50	-21.80	0.792727272727273	9	3-9,940-934;10-21,932-921	1-2,942-941[UP5];x-x,933-933[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GGUUGCAGUCGGUUAUGGUACC&AUUACUAUA-UUGAUUGCAACU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN27331_c0_g1_932_TPlot.pdf
TRINITY_DN27331_c0_g1:935	si_s16	TRINITY_DN27331_c0_g1	923	944	935	-25.60	-17.60	0.6875	12	5-11,940-934;12-21,932-923	1-4,944-941[UP5];x-x,933-933[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	UUGCAGUCGGUUAUGGUACCGA&UUAUUACUAUA-UUGAUUGCAA	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN27331_c0_g1_935_TPlot.pdf
TRINITY_DN27331_c0_g1:936	si_s15	TRINITY_DN27331_c0_g1	924	945	936	-25.60	-16.80	0.65625	13.5	6-12,940-934;13-21,932-924	1-5,945-941[UP5];x-x,933-933[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	UGCAGUCGGUUAUGGUACCGAA&AUUAUUACUAUA-UUGAUUGCA	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN27331_c0_g1_936_TPlot.pdf
TRINITY_DN27331_c0_g1:968	si_s689	TRINITY_DN27331_c0_g1	957	979	968	-26.50	-18.60	0.70188679245283	8	1-7,979-973;8-19,970-959	x-x,972-971[BULt];20-21,958-957[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	CUAUUGGCUAGUUAAAAACUCAU&AUGAGUU--UAAUUAGUCGAUUU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN27331_c0_g1_968_TPlot.pdf
TRINITY_DN27331_c0_g1:969	si_s688	TRINITY_DN27331_c0_g1	958	980	969	-28.20	-21.80	0.773049645390071	7	1-8,980-973;9-20,970-959	x-x,972-971[BULt];21-21,958-958[UP3]	.((((((((((((..((((((((&))))))))--)))))))))))).	UAUUGGCUAGUUAAAAACUCAUG&CAUGAGUU--UAAUUAGUCGAUU	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN27331_c0_g1_969_TPlot.pdf
TRINITY_DN27331_c0_g1:970	si_s687	TRINITY_DN27331_c0_g1	959	981	970	-29.00	-22.00	0.758620689655172	6.5	2-9,980-973;10-21,970-959	1-1,981-981[UP5];x-x,972-971[BULt]	((((((((((((..((((((((.&.))))))))--))))))))))))	AUUGGCUAGUUAAAAACUCAUGG&ACAUGAGUU--UAAUUAGUCGAU	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s687_TRINITY_DN27331_c0_g1_970_TPlot.pdf
TRINITY_DN27331_c0_g1:973	si_s686	TRINITY_DN27331_c0_g1	960	982	973	-28.80	-21.00	0.729166666666667	8.5	3-10,980-973;11-21,970-960	1-2,982-981[UP5];x-x,972-971[BULt]	(((((((((((..((((((((..&..))))))))--)))))))))))	UUGGCUAGUUAAAAACUCAUGGG&AACAUGAGUU--UAAUUAGUCGA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s686_TRINITY_DN27331_c0_g1_973_TPlot.pdf
TRINITY_DN27331_c0_g1:974	si_s685	TRINITY_DN27331_c0_g1	961	983	974	-27.80	-19.70	0.70863309352518	10.5	4-11,980-973;12-21,970-961	1-3,983-981[UP5];x-x,972-971[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	UGGCUAGUUAAAAACUCAUGGGG&AAACAUGAGUU--UAAUUAGUCG	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s685_TRINITY_DN27331_c0_g1_974_TPlot.pdf
TRINITY_DN27331_c0_g1:975	si_s684	TRINITY_DN27331_c0_g1	962	984	975	-28.30	-19.00	0.671378091872792	12	5-12,980-973;13-21,970-962	1-4,984-981[UP5];x-x,972-971[BULt]	(((((((((..((((((((....&....))))))))--)))))))))	GGCUAGUUAAAAACUCAUGGGGC&GAAACAUGAGUU--UAAUUAGUC	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN27331_c0_g1_975_TPlot.pdf
TRINITY_DN27346_c0_g1:1451	si_s87	TRINITY_DN27346_c0_g1	1440	1461	1451	-32.90	-22.62	0.687537993920973	11.5	2-9,1460-1453;13-20,1448-1441	1-1,1461-1461[UP5];10-12,1452-1449[AILt];21-21,1440-1440[UP3]	.((((((((....((((((((.&.))))))))-...)))))))).	UGGCGAAGAUCCUAGAAGGGAU&UUCCUUUCU-UCUUCUUCGCUU	4	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN27346_c0_g1_1451_TPlot.pdf
TRINITY_DN2736_c0_g2:3167	si_s797	TRINITY_DN2736_c0_g2	3156	3175	3167	-30.00	-19.90	0.663333333333333	7.5	1-2,3175-3174;4-11,3173-3166;13-20,3164-3157	3-3,x-x[BULq];12-12,3165-3165[SIL];21-21,3156-3156[UP3]	.((((((((.((((((((-((&)).)))))))).)))))))).	CAAUGAAGAAAGAAUGCG-GC&GCUCGUAUUUUAUCUUCGUUA	4	0.999999942932217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2736_c0_g2_3167_TPlot.pdf
TRINITY_DN27371_c0_g1:50	si_s586	TRINITY_DN27371_c0_g1	37	59	50	-27.10	-17.98	0.663468634686347	10.5	4-14,56-46;17-21,41-37	1-3,59-57[UP5];15-16,45-42[AILt]	(((((....(((((((((((...&...)))))))))))--..)))))	UUGGAGCAGUGUCUAUGAUUGGA&AAAAAUCAUGGAUA--AAUCCAA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s586_TRINITY_DN27371_c0_g1_50_TPlot.pdf
TRINITY_DN2737_c0_g1:1349	si_a756	TRINITY_DN2737_c0_g1	1338	1359	1349	-33.10	-24.70	0.746223564954683	6	1-6,1359-1354;7-15,1352-1344;18-19,1341-1340	x-x,1353-1353[BULt];16-17,1343-1342[SIL];20-21,1339-1338[UP3]	..((..(((((((((.((((((&))))))-)))))))))..))..	AACAUUAACCCAAAGUGAGGUU&AACCUC-CUUUGGGUUUUUGAU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2737_c0_g1_1349_TPlot.pdf
TRINITY_DN2737_c0_g1:1352	si_a753	TRINITY_DN2737_c0_g1	1341	1362	1352	-33.10	-24.10	0.72809667673716	8	1-2,1362-1361;4-9,1359-1354;10-18,1352-1344	3-3,1360-1360[SIL];x-x,1353-1353[BULt];19-21,1343-1341[UP3]	...(((((((((.((((((.((&)).))))))-)))))))))...	AUUAACCCAAAGUGAGGUUGGU&AUGAACCUC-CUUUGGGUUUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN2737_c0_g1_1352_TPlot.pdf
TRINITY_DN2737_c0_g1:26	si_s103	TRINITY_DN2737_c0_g1	16	36	26	-34.10	-22.20	0.651026392961877	6	2-9,35-28;10-17,26-19;19-21,18-16	1-1,36-36[UP5];x-x,27-27[BULt];18-18,x-x[BULq]	(((-((((((((.((((((((.&.))))))))-)))))))).)))	UCU-UUUUCCAAUUCCGAGGUU&CGCUUCGGA-UUGGAAAAUAGA	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN2737_c0_g1_26_TPlot.pdf
TRINITY_DN2739_c0_g1:1500	si_s76	TRINITY_DN2739_c0_g1	1489	1509	1500	-23.60	-15.60	0.661016949152542	13	4-8,1506-1502;10-21,1500-1489	1-3,1509-1507[UP5];9-9,1501-1501[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGGGGGGGAGAGUGAAGGUCG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2739_c0_g1_1500_TPlot.pdf
TRINITY_DN2739_c0_g1:3432	si_s319	TRINITY_DN2739_c0_g1	3418	3441	3432	-31.30	-20.40	0.651757188498402	12	2-15,3440-3427;19-21,3420-3418	1-1,3441-3441[UP5];16-18,3426-3421[AILt]	(((......((((((((((((((.&.))))))))))))))---...)))	GUGGAAUCGGUGGCGAGGAGGAUU&UGUCCUUCUUGUUAC---AAACAU	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN2739_c0_g1_3432_TPlot.pdf
TRINITY_DN2739_c0_g1:3433	si_s803	TRINITY_DN2739_c0_g1	3422	3446	3433	-26.00	-17.70	0.680769230769231	16	1-6,3446-3441;7-17,3436-3426	x-x,3440-3437[BULt];18-21,3425-3422[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	AAUCGGUGGCGAGGAGGAUUGAGAU&AUUUUA----UCUUCGUUACCUUUU	2	0.999996736926663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2739_c0_g1_3433_TPlot.pdf
TRINITY_DN2739_c0_g1:3434	si_s317	TRINITY_DN2739_c0_g1	3423	3443	3434	-33.10	-21.90	0.661631419939577	10	1-2,3443-3442;4-17,3440-3427	3-3,3441-3441[SIL];18-21,3426-3423[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUCGGUGGCGAGGAGGAUUGA&UCUGUCCUUCUUGUUACAAAC	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN2739_c0_g1_3434_TPlot.pdf
TRINITY_DN2739_c0_g1:3435	si_s801	TRINITY_DN2739_c0_g1	3424	3448	3435	-28.20	-21.90	0.776595744680851	15	1-8,3448-3441;9-19,3436-3426	x-x,3440-3437[BULt];20-21,3425-3424[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	UCGGUGGCGAGGAGGAUUGAGAUGC&GUAUUUUA----UCUUCGUUACCUU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN2739_c0_g1_3435_TPlot.pdf
TRINITY_DN2739_c0_g1:3436	si_s800	TRINITY_DN2739_c0_g1	3425	3449	3436	-29.70	-22.30	0.750841750841751	15	2-9,3448-3441;10-20,3436-3426	1-1,3449-3449[UP5];x-x,3440-3437[BULt];21-21,3425-3425[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	CGGUGGCGAGGAGGAUUGAGAUGCU&CGUAUUUUA----UCUUCGUUACCU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN2739_c0_g1_3436_TPlot.pdf
TRINITY_DN2739_c0_g1:3438	si_s313	TRINITY_DN2739_c0_g1	3427	3447	3438	-30.80	-21.70	0.704545454545454	12	5-6,3443-3442;8-21,3440-3427	1-4,3447-3444[UP5];7-7,3441-3441[SIL]	((((((((((((((.((....&....)).))))))))))))))	GUGGCGAGGAGGAUUGAGAUG&AAAUUCUGUCCUUCUUGUUAC	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN2739_c0_g1_3438_TPlot.pdf
TRINITY_DN2739_c0_g1:3440	si_s86	TRINITY_DN2739_c0_g1	3429	3454	3440	-32.90	-22.30	0.677811550151976	15.5	1-5,3454-3450;6-9,3445-3442;11-21,3439-3429	x-x,3449-3446[BULt];10-10,3441-3440[AILt]	(((((((((((..((((....(((((&)))))----))))-.)))))))))))	GGCGAGGAGGAUUGAGAUGCUGGAGA&UUUCC----UUUC-UUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2739_c0_g1_3440_TPlot.pdf
TRINITY_DN2739_c0_g1:3456	si_a548	TRINITY_DN2739_c0_g1	3442	3465	3456	-27.20	-18.20	0.669117647058823	9.5	1-3,3465-3463;5-15,3461-3451;16-21,3447-3442	4-4,3462-3462[SIL];x-x,3450-3448[BULt]	((((((...(((((((((((.(((&))).)))))))))))---))))))	GAGAUGCUGGAGAGAUGGGUGGAG&UUCAAUCUAUUUCUU---UAUCUC	2	0.990365583261362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN2739_c0_g1_3456_TPlot.pdf
TRINITY_DN2739_c0_g1:3545	si_s633	TRINITY_DN2739_c0_g1	3532	3555	3545	-37.90	-25.10	0.662269129287599	9.5	1-8,3555-3548;9-15,3546-3540;17-18,3538-3537;19-20,3534-3533	x-x,3547-3547[BULt];16-16,3539-3539[SIL];x-x,3536-3535[BULt];21-21,3532-3532[UP3]	.((..((.(((((((.((((((((&))))))))-))))))).))--)).	UGGAUGCUGACGCCUCGCGAGAGG&CUUUUCGU-AGGCGUUUGC--CCU	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN2739_c0_g1_3545_TPlot.pdf
TRINITY_DN2739_c0_g1:3548	si_s631	TRINITY_DN2739_c0_g1	3536	3557	3548	-36.00	-24.40	0.677777777777778	9.5	2-10,3556-3548;11-17,3546-3540;19-20,3538-3537	1-1,3557-3557[UP5];x-x,3547-3547[BULt];18-18,3539-3539[SIL];21-21,3536-3536[UP3]	.((.(((((((.(((((((((.&.)))))))))-))))))).)).	UGCUGACGCCUCGCGAGAGGGG&AUCUUUUCGU-AGGCGUUUGCC	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN2739_c0_g1_3548_TPlot.pdf
TRINITY_DN2739_c0_g1:3586	si_a230	TRINITY_DN2739_c0_g1	3575	3594	3586	-26.90	-20.70	0.769516728624535	6.5	2-7,3593-3588;9-20,3587-3576	1-1,3594-3594[UP5];8-8,x-x[BULq];21-21,3575-3575[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	GCGAGUUGAUUGU-GAAGCAC&AUGUUUCUAUAAUCAAUUCGA	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN2739_c0_g1_3586_TPlot.pdf
TRINITY_DN2739_c0_g1:3587	si_a229	TRINITY_DN2739_c0_g1	3576	3595	3587	-27.60	-20.50	0.742753623188406	7.5	3-8,3593-3588;10-21,3587-3576	1-2,3595-3594[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	CGAGUUGAUUGU-GAAGCACA&CAUGUUUCUAUAAUCAAUUCG	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN2739_c0_g1_3587_TPlot.pdf
TRINITY_DN2739_c0_g1:3679	si_s87	TRINITY_DN2739_c0_g1	3668	3688	3679	-32.90	-22.60	0.68693009118541	10.5	1-5,3688-3684;8-8,3681-3681;10-21,3679-3668	6-7,3683-3682[SIL];9-9,3680-3680[SIL]	((((((((((((.(..(((((&)))))..).))))))))))))	AGGCGGGGAGGAUGUCGGGGA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2739_c0_g1_3679_TPlot.pdf
TRINITY_DN2739_c0_g1:4822	si_s29	TRINITY_DN2739_c0_g1	4811	4835	4822	-26.40	-17.40	0.659090909090909	14	1-6,4835-4830;7-17,4825-4815	x-x,4829-4826[BULt];18-21,4814-4811[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	AGUCAAGAUUUGGUUCGGAGCGAUC&GAUUGC----AACUAAAUCUUUAAU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN2739_c0_g1_4822_TPlot.pdf
TRINITY_DN2739_c0_g1:4824	si_s27	TRINITY_DN2739_c0_g1	4813	4837	4824	-27.00	-17.60	0.651851851851852	14	2-8,4836-4830;9-19,4825-4815	1-1,4837-4837[UP5];x-x,4829-4826[BULt];20-21,4814-4813[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	UCAAGAUUUGGUUCGGAGCGAUCGC&UUGAUUGC----AACUAAAUCUUUA	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN2739_c0_g1_4824_TPlot.pdf
TRINITY_DN2739_c0_g1:4828	si_a285	TRINITY_DN2739_c0_g1	4817	4837	4828	-28.30	-18.60	0.657243816254417	10	3-10,4835-4828;12-13,4826-4825;15-19,4823-4819	1-2,4837-4836[UP5];11-11,4827-4827[SIL];14-14,4824-4824[SIL];20-21,4818-4817[UP3]	..(((((.((.((((((((..&..)))))))).)).)))))..	GAUUUGGUUCGGAGCGAUCGC&AAGAUCGCUUGGAUUUAAAAA	3	0.999990257383135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN2739_c0_g1_4828_TPlot.pdf
TRINITY_DN2739_c0_g1:4829	si_a284	TRINITY_DN2739_c0_g1	4818	4838	4829	-28.30	-18.60	0.657243816254417	11	4-11,4835-4828;13-14,4826-4825;16-20,4823-4819	1-3,4838-4836[UP5];12-12,4827-4827[SIL];15-15,4824-4824[SIL];21-21,4818-4818[UP3]	.(((((.((.((((((((...&...)))))))).)).))))).	AUUUGGUUCGGAGCGAUCGCC&AAAGAUCGCUUGGAUUUAAAA	2	0.999368946623723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN2739_c0_g1_4829_TPlot.pdf
TRINITY_DN2739_c0_g1:4830	si_a283	TRINITY_DN2739_c0_g1	4819	4839	4830	-28.30	-18.40	0.65017667844523	11	5-12,4835-4828;14-15,4826-4825;17-21,4823-4819	1-4,4839-4836[UP5];13-13,4827-4827[SIL];16-16,4824-4824[SIL]	(((((.((.((((((((....&....)))))))).)).)))))	UUUGGUUCGGAGCGAUCGCCC&AAAAGAUCGCUUGGAUUUAAA	2	0.999824886012476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN2739_c0_g1_4830_TPlot.pdf
TRINITY_DN2739_c0_g1:4844	si_a254	TRINITY_DN2739_c0_g1	4833	4856	4844	-38.80	-25.60	0.65979381443299	16	1-4,4856-4853;6-8,4852-4850;9-18,4845-4836	5-5,x-x[BULq];x-x,4849-4846[BULt];19-21,4835-4833[UP3]	...((((((((((....(((-((((&)))).)))----))))))))))...	AUCGCCCUCGGUGUGCUCGA-CGGG&CCCGAUUG----UAUCGAGGGCAAA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN2739_c0_g1_4844_TPlot.pdf
TRINITY_DN2739_c0_g1:4845	si_a253	TRINITY_DN2739_c0_g1	4834	4857	4845	-41.20	-28.00	0.679611650485437	15	1-5,4857-4853;7-9,4852-4850;10-19,4845-4836	6-6,x-x[BULq];x-x,4849-4846[BULt];20-21,4835-4834[UP3]	..((((((((((....(((-(((((&))))).)))----))))))))))..	UCGCCCUCGGUGUGCUCGA-CGGGG&CCCCGAUUG----UAUCGAGGGCAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN2739_c0_g1_4845_TPlot.pdf
TRINITY_DN2739_c0_g1:5431	si_a498	TRINITY_DN2739_c0_g1	5420	5442	5431	-33.50	-23.10	0.68955223880597	10.5	3-8,5440-5435;9-20,5432-5421	1-2,5442-5441[UP5];x-x,5434-5433[BULt];21-21,5420-5420[UP3]	.((((((((((((..((((((..&..))))))--)))))))))))).	AGAGGAAGACGAAGAGAACGGGC&UGUCGUUU--UUCGUCUUCCUUG	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2739_c0_g1_5431_TPlot.pdf
TRINITY_DN2739_c0_g1:5773	si_s79	TRINITY_DN2739_c0_g1	5762	5782	5773	-26.20	-19.00	0.725190839694656	8	3-12,5780-5771;15-21,5768-5762	1-2,5782-5781[UP5];13-14,5770-5769[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GAGGAGACCGGAAAGAAGGCC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2739_c0_g1_5773_TPlot.pdf
TRINITY_DN2739_c0_g1:933	si_a775	TRINITY_DN2739_c0_g1	921	942	933	-27.20	-17.90	0.658088235294118	7.5	1-8,942-935;10-14,933-929;15-19,927-923	9-9,934-934[SIL];x-x,928-928[BULt];20-21,922-921[UP3]	..(((((.(((((.((((((((&)))))))).)))))-)))))..	UCAUGGAGAGAGUGGAGUCGAU&AUUGAUUCAACUCU-UCUAUUU	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN2739_c0_g1_933_TPlot.pdf
TRINITY_DN273_c0_g1:1953	si_a788	TRINITY_DN273_c0_g1	1942	1962	1953	-24.80	-17.10	0.689516129032258	12.5	4-19,1959-1944	1-3,1962-1960[UP5];20-21,1943-1942[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCGGAGGGUGGGAAGAUGCAU&UUCUAUUUUUCUAUUUUCCAA	4	0.999999984130271	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN273_c0_g1_1953_TPlot.pdf
TRINITY_DN273_c0_g1:1955	si_a323	TRINITY_DN273_c0_g1	1945	1965	1955	-26.80	-17.90	0.667910447761194	7.5	1-6,1965-1960;7-16,1958-1949;18-21,1948-1945	x-x,1959-1959[BULt];17-17,x-x[BULq]	((((-((((((((((.((((((&))))))-)))))))))).))))	GAGG-GUGGGAAGAUGCAUGGG&UCCAUG-AUUUUUUUAUUCCUU	4	0.999999811047329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN273_c0_g1_1955_TPlot.pdf
TRINITY_DN2740_c0_g1:694	si_a836	TRINITY_DN2740_c0_g1	683	703	694	-24.10	-15.70	0.651452282157676	16	8-19,696-685	1-7,703-697[UP5];20-21,684-683[UP3]	..((((((((((((.......&.......))))))))))))..	GGGGUAACUUCUAUGUACCUG&AAAAAAAAUAGAAGUUGCUAA	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN2740_c0_g1_694_TPlot.pdf
TRINITY_DN2747_c0_g1:1178	si_a124	TRINITY_DN2747_c0_g1	1167	1187	1178	-25.10	-16.50	0.657370517928287	8	1-6,1187-1182;8-13,1180-1175;15-19,1173-1169	7-7,1181-1181[SIL];14-14,1174-1174[SIL];20-21,1168-1167[UP3]	..(((((.((((((.((((((&)))))).)))))).)))))..	AAUGCUAAUGCUGUUGAACAG&UUGUUUUAUAGCAAUAGUAAU	4	0.999953229570889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN2747_c0_g1_1178_TPlot.pdf
TRINITY_DN2748_c0_g1:1162	si_a756	TRINITY_DN2748_c0_g1	1151	1174	1162	-33.10	-23.00	0.694864048338369	11.5	3-6,1172-1169;7-8,1167-1166;9-20,1163-1152	1-2,1174-1173[UP5];x-x,1168-1168[BULt];x-x,1165-1164[BULt];21-21,1151-1151[UP3]	.((((((((((((..((.((((..&..))))-))--)))))))))))).	UUCGAAAACCCAACCGGUGAGGGA&AACCUC-CU--UUGGGUUUUUGAU	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2748_c0_g1_1162_TPlot.pdf
TRINITY_DN2748_c0_g1:718	si_a762	TRINITY_DN2748_c0_g1	706	727	718	-29.70	-19.70	0.663299663299663	5.5	2-13,726-715;14-20,713-707	1-1,727-727[UP5];x-x,714-714[BULt];21-21,706-706[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	AAGUCAGUAUAGAAACCCAAAC&CUUUGGGUUUUUG-AUUGAUUC	4	0.999999979669509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2748_c0_g1_718_TPlot.pdf
TRINITY_DN2749_c0_g1:4240	si_a392	TRINITY_DN2749_c0_g1	4229	4249	4240	-22.80	-15.10	0.662280701754386	6.5	3-15,4247-4235;17-19,4233-4231	1-2,4249-4248[UP5];16-16,4234-4234[SIL];20-21,4230-4229[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	AUAUAUUUCUAUAUUCUUACC&AUUAAGAAUAUAGAAUUGUUU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN2749_c0_g1_4240_TPlot.pdf
TRINITY_DN2752_c0_g1:1456	si_s75	TRINITY_DN2752_c0_g1	1445	1465	1456	-24.00	-17.16	0.715	9.5	1-5,1465-1461;10-21,1456-1445	6-9,1460-1457[SIL]	((((((((((((....(((((&)))))....))))))))))))	GGAAAGGAGAGAUUGCAAAUG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2752_c0_g1_1456_TPlot.pdf
TRINITY_DN2752_c0_g1:1800	si_s428	TRINITY_DN2752_c0_g1	1789	1809	1800	-21.50	-14.00	0.651162790697674	8	1-15,1809-1795	16-21,1794-1789[UP3]	......(((((((((((((((&)))))))))))))))......	AACCAAAAUUGUUGUUGUAUA&UAUAUAACAAUAAUUACAUAU	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN2752_c0_g1_1800_TPlot.pdf
TRINITY_DN2752_c0_g1:1803	si_s448	TRINITY_DN2752_c0_g1	1792	1812	1803	-23.00	-19.40	0.843478260869565	4	1-18,1812-1795	19-21,1794-1792[UP3]	...((((((((((((((((((&))))))))))))))))))...	CAAAAUUGUUGUUGUAUAUAA&UUAUAUAUAACAACAAUUAUC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN2752_c0_g1_1803_TPlot.pdf
TRINITY_DN2752_c0_g1:1804	si_s447	TRINITY_DN2752_c0_g1	1793	1813	1804	-21.10	-19.40	0.919431279620853	4	2-19,1812-1795	1-1,1813-1813[UP5];20-21,1794-1793[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAAAUUGUUGUUGUAUAUAAG&AUUAUAUAUAACAACAAUUAU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN2752_c0_g1_1804_TPlot.pdf
TRINITY_DN2752_c0_g1:1805	si_s446	TRINITY_DN2752_c0_g1	1794	1814	1805	-21.30	-19.40	0.910798122065728	5	3-20,1812-1795	1-2,1814-1813[UP5];21-21,1794-1794[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AAAUUGUUGUUGUAUAUAAGU&UAUUAUAUAUAACAACAAUUA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN2752_c0_g1_1805_TPlot.pdf
TRINITY_DN2752_c0_g1:1807	si_s444	TRINITY_DN2752_c0_g1	1796	1816	1807	-22.80	-18.20	0.798245614035088	8	5-21,1812-1796	1-4,1816-1813[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUUGUUGUUGUAUAUAAGUCA&CAUAUUAUAUAUAACAACAAU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN2752_c0_g1_1807_TPlot.pdf
TRINITY_DN2752_c0_g1:1809	si_s442	TRINITY_DN2752_c0_g1	1798	1818	1809	-23.80	-16.20	0.680672268907563	11.5	7-21,1812-1798	1-6,1818-1813[UP5]	(((((((((((((((......&......)))))))))))))))	UGUUGUUGUAUAUAAGUCAUU&UACAUAUUAUAUAUAACAACA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN2752_c0_g1_1809_TPlot.pdf
TRINITY_DN2752_c0_g1:295	si_a472	TRINITY_DN2752_c0_g1	284	306	295	-21.50	-16.60	0.772093023255814	8	1-9,306-298;10-20,295-285	x-x,297-296[BULt];21-21,284-284[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	GAUAUGACGAUGCCAUUACAUGU&AUAUGUAAU--UAUUGUUAUAUA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN2752_c0_g1_295_TPlot.pdf
TRINITY_DN2752_c0_g1:301	si_a468	TRINITY_DN2752_c0_g1	288	310	301	-21.30	-14.90	0.699530516431925	7.5	3-13,308-298;14-21,295-288	1-2,310-309[UP5];x-x,297-296[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	UGACGAUGCCAUUACAUGUUACA&UAUAAUAUGUAAU--UAUUGUUA	2	0.918052453677541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN2752_c0_g1_301_TPlot.pdf
TRINITY_DN2752_c0_g1:302	si_a467	TRINITY_DN2752_c0_g1	289	311	302	-21.10	-13.80	0.654028436018957	9.5	4-14,308-298;15-21,295-289	1-3,311-309[UP5];x-x,297-296[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GACGAUGCCAUUACAUGUUACAA&AUAUAAUAUGUAAU--UAUUGUU	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN2752_c0_g1_302_TPlot.pdf
TRINITY_DN2752_c0_g1:414	si_s41	TRINITY_DN2752_c0_g1	403	423	414	-25.00	-17.70	0.708	6.5	1-4,423-420;7-21,417-403	5-6,419-418[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	UGGAGUUCAGUUAUUUCAGAU&AUCUUUAAUAAUUGGAUUUCA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN2752_c0_g1_414_TPlot.pdf
TRINITY_DN2752_c0_g1:415	si_s40	TRINITY_DN2752_c0_g1	404	424	415	-24.30	-17.50	0.720164609053498	6	1-5,424-420;8-21,417-404	6-7,419-418[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GGAGUUCAGUUAUUUCAGAUU&AAUCUUUAAUAAUUGGAUUUC	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN2752_c0_g1_415_TPlot.pdf
TRINITY_DN2752_c0_g1:416	si_s39	TRINITY_DN2752_c0_g1	405	425	416	-22.30	-15.70	0.704035874439462	7	2-6,424-420;9-21,417-405	1-1,425-425[UP5];7-8,419-418[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	GAGUUCAGUUAUUUCAGAUUG&AAAUCUUUAAUAAUUGGAUUU	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN2752_c0_g1_416_TPlot.pdf
TRINITY_DN27530_c0_g2:104	si_a318	TRINITY_DN27530_c0_g2	93	113	104	-22.50	-15.10	0.671111111111111	8	1-8,113-106;10-12,104-102;15-21,99-93	9-9,105-105[SIL];13-14,101-100[SIL]	(((((((..(((.((((((((&)))))))).)))..)))))))	GUAGAAAUUUCAAGGGUGGAU&AUUUAUCCAUGAUUUUUUUAU	2	0.999999852867475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN27530_c0_g2_104_TPlot.pdf
TRINITY_DN2753_c0_g1:297	si_a302	TRINITY_DN2753_c0_g1	286	306	297	-28.20	-19.50	0.691489361702128	16	9-21,298-286	1-8,306-299[UP5]	(((((((((((((........&........)))))))))))))	UAGAUCCAGGCGAGACGGAAC&AAAAAGAUUCGCUUGGAUUUA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN2753_c0_g1_297_TPlot.pdf
TRINITY_DN2753_c0_g1:595	si_s485	TRINITY_DN2753_c0_g1	584	604	595	-18.10	-14.00	0.773480662983425	7	1-16,604-589	17-21,588-584[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAUAAUUUAAGUAAAUGUAG&CUAUAUUUAUUUAAAUAUAAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN2753_c0_g1_595_TPlot.pdf
TRINITY_DN2753_c0_g1:598	si_s482	TRINITY_DN2753_c0_g1	587	608	598	-21.20	-16.20	0.764150943396226	6.5	1-3,608-606;4-19,604-589	x-x,605-605[BULt];20-21,588-587[UP3]	..((((((((((((((((.(((&)))-))))))))))))))))..	UAAUUUAAGUAAAUGUAGCGGU&AUC-CUAUAUUUAUUUAAAUAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN2753_c0_g1_598_TPlot.pdf
TRINITY_DN2753_c0_g1:599	si_s481	TRINITY_DN2753_c0_g1	588	609	599	-23.00	-16.50	0.717391304347826	6.5	2-4,608-606;5-20,604-589	1-1,609-609[UP5];x-x,605-605[BULt];21-21,588-588[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	AAUUUAAGUAAAUGUAGCGGUA&GAUC-CUAUAUUUAUUUAAAUA	0	0.0573262718733907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN2753_c0_g1_599_TPlot.pdf
TRINITY_DN2754_c0_g1:143	si_s387	TRINITY_DN2754_c0_g1	130	153	143	-39.50	-26.38	0.667848101265823	12	1-6,153-148;7-10,146-143;13-21,138-130	x-x,147-147[BULt];11-12,142-139[AILt]	(((((((((....((((.((((((&))))))-))))--..)))))))))	UCCUUGGGGGUCCUAGGAGCGGAC&GUCCGC-CUUA--CAUUCCAAGGA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN2754_c0_g1_143_TPlot.pdf
TRINITY_DN2755_c0_g1:2168	si_a636	TRINITY_DN2755_c0_g1	2157	2177	2168	-26.30	-18.50	0.703422053231939	8.5	2-16,2176-2162	1-1,2177-2177[UP5];17-21,2161-2157[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGAUCUUCAAGAAAGUCGACU&UGUCGAUUUUUUUGAGUAAUA	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2755_c0_g1_2168_TPlot.pdf
TRINITY_DN2755_c0_g1:2412	si_a327	TRINITY_DN2755_c0_g1	2401	2421	2412	-28.40	-20.10	0.707746478873239	5.5	1-3,2421-2419;5-13,2417-2409;15-21,2407-2401	4-4,2418-2418[SIL];14-14,2408-2408[SIL]	(((((((.(((((((((.(((&))).))))))))).)))))))	GGACGAGAAAUGAAGAAUUCA&UGAUUUUUUUAUUCCUUGUCC	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2755_c0_g1_2412_TPlot.pdf
TRINITY_DN2755_c0_g1:2443	si_a330	TRINITY_DN2755_c0_g1	2431	2452	2443	-30.50	-20.10	0.659016393442623	6.5	2-10,2451-2443;12-18,2441-2435;19-21,2433-2431	1-1,2452-2452[UP5];11-11,2442-2442[SIL];x-x,2434-2434[BULt]	(((.(((((((.(((((((((.&.))))))))).)))))))-)))	UCGCGGACGAGAAAUGAAGAAU&UUUUUUUAUUCCUUGUCC-CGA	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN2755_c0_g1_2443_TPlot.pdf
TRINITY_DN27562_c0_g1:185	si_a766	TRINITY_DN27562_c0_g1	174	193	185	-30.50	-22.60	0.740983606557377	9.5	1-5,193-189;9-20,186-175	6-8,188-187[AILq];21-21,174-174[UP3]	.((((((((((((..-(((((&)))))...)))))))))))).	UGUUGAGUCAAUUUU-GACCC&GGGUUUUUGAUUGAUUCAACU	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN27562_c0_g1_185_TPlot.pdf
TRINITY_DN27562_c0_g1:186	si_a765	TRINITY_DN27562_c0_g1	175	194	186	-30.50	-23.20	0.760655737704918	8.5	1-6,194-189;10-21,186-175	7-9,188-187[AILq]	((((((((((((..-((((((&))))))...))))))))))))	GUUGAGUCAAUUUU-GACCCA&UGGGUUUUUGAUUGAUUCAAC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN27562_c0_g1_186_TPlot.pdf
TRINITY_DN27562_c0_g1:187	si_a764	TRINITY_DN27562_c0_g1	176	195	187	-28.90	-20.50	0.709342560553633	9.5	2-7,194-189;11-21,186-176	1-1,195-195[UP5];8-10,188-187[AILq]	(((((((((((..-((((((.&.))))))...)))))))))))	UUGAGUCAAUUUU-GACCCAG&UUGGGUUUUUGAUUGAUUCAA	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN27562_c0_g1_187_TPlot.pdf
TRINITY_DN27565_c0_g1:275	si_s132	TRINITY_DN27565_c0_g1	264	284	275	-28.40	-19.00	0.669014084507042	7	4-16,281-269;18-21,267-264	1-3,284-282[UP5];17-17,268-268[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GUUUGUGAUUGAUUCAAUCAU&AGAGUUGAAUCAAUCAAAAAC	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN27565_c0_g1_275_TPlot.pdf
TRINITY_DN27565_c0_g1:335	si_a758	TRINITY_DN27565_c0_g1	324	344	335	-34.00	-22.20	0.652941176470588	8	1-18,344-327;21-21,324-324	19-20,326-325[SIL]	(..((((((((((((((((((&))))))))))))))))))..)	CUUUUGAGGAUUCGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	4	0.99999999689297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN27565_c0_g1_335_TPlot.pdf
TRINITY_DN27565_c0_g1:553	si_a639	TRINITY_DN27565_c0_g1	542	562	553	-23.60	-16.50	0.699152542372881	8.5	2-15,561-548	1-1,562-562[UP5];16-21,547-542[UP3]	......((((((((((((((.&.))))))))))))))......	CCAAUCUGCUCAAAAAAGUCC&CGAUUUUUUUGAGUAAUAUAU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN27565_c0_g1_553_TPlot.pdf
TRINITY_DN27565_c0_g1:558	si_a634	TRINITY_DN27565_c0_g1	547	567	558	-26.40	-17.90	0.678030303030303	9.5	4-5,564-563;7-20,561-548	1-3,567-565[UP5];6-6,562-562[SIL];21-21,547-547[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	CUGCUCAAAAAAGUCCACGAG&UAUGUCGAUUUUUUUGAGUAA	3	0.999999366446917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN27565_c0_g1_558_TPlot.pdf
TRINITY_DN27572_c0_g1:56	si_s77	TRINITY_DN27572_c0_g1	43	65	56	-25.50	-16.90	0.662745098039216	5	2-13,64-53;14-20,50-44	1-1,65-65[UP5];x-x,52-51[BULt];21-21,43-43[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	UAAGAAAGUUGAAAGAAAAGAAU&UUUUUUUUCUUUC--CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN27572_c0_g1_56_TPlot.pdf
TRINITY_DN27572_c0_g1:57	si_s76	TRINITY_DN27572_c0_g1	44	66	57	-23.60	-16.90	0.716101694915254	6	3-14,64-53;15-21,50-44	1-2,66-65[UP5];x-x,52-51[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	AAGAAAGUUGAAAGAAAAGAAUU&AUUUUUUUUCUUUC--CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN27572_c0_g1_57_TPlot.pdf
TRINITY_DN27575_c0_g1:3953	si_s78	TRINITY_DN27575_c0_g1	3934	3962	3953	-26.20	-17.20	0.656488549618321	21	2-10,3961-3953;11-20,3944-3935	1-1,3962-3962[UP5];x-x,3952-3945[BULt];21-21,3934-3934[UP3]	.((((((((((........(((((((((.&.)))))))))--------)))))))))).	UGAAGGGAGGAUAAAAAUAAAGAGAAAGU&UUUUUUUCUU--------UCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN27575_c0_g1_3953_TPlot.pdf
TRINITY_DN2757_c0_g1:1895	si_s801	TRINITY_DN2757_c0_g1	1884	1904	1895	-28.20	-19.30	0.684397163120567	17	9-21,1896-1884	1-8,1904-1897[UP5]	(((((((((((((........&........)))))))))))))	GAGGUGACGGAGAAAACGAUC&GUAUUUUAUCUUCGUUACCUU	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN2757_c0_g1_1895_TPlot.pdf
TRINITY_DN27585_c0_g1:450	si_a820	TRINITY_DN27585_c0_g1	437	459	450	-28.20	-18.50	0.656028368794326	6	2-14,458-446;16-19,442-439	1-1,459-459[UP5];15-15,445-443[AILt];20-21,438-437[UP3]	..((((...(((((((((((((.&.)))))))))))))--.))))..	UGUUUCCAAUUCCUUUCUUCUUG&GAAGAAGAAAGGAA--AGAAAAA	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN27585_c0_g1_450_TPlot.pdf
TRINITY_DN2758_c1_g1:695	si_a351	TRINITY_DN2758_c1_g1	684	705	695	-20.50	-13.60	0.663414634146341	9.5	2-7,704-699;9-19,696-686	1-1,705-705[UP5];8-8,698-697[AILt];20-21,685-684[UP3]	..(((((((((((..((((((.&.))))))-.)))))))))))..	UACAAAAUGGAGUCGAGUAUUA&AAAUAUU-AAUUCUAUUUUGAU	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2758_c1_g1_695_TPlot.pdf
TRINITY_DN2758_c1_g1:696	si_a350	TRINITY_DN2758_c1_g1	685	706	696	-20.30	-13.60	0.669950738916256	10.5	3-8,704-699;10-20,696-686	1-2,706-705[UP5];9-9,698-697[AILt];21-21,685-685[UP3]	.(((((((((((..((((((..&..))))))-.))))))))))).	ACAAAAUGGAGUCGAGUAUUAC&AAAAUAUU-AAUUCUAUUUUGA	3	0.999923186256062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN2758_c1_g1_696_TPlot.pdf
TRINITY_DN2758_c1_g1:740	si_s418	TRINITY_DN2758_c1_g1	730	749	740	-26.70	-18.30	0.685393258426966	7.5	1-11,749-739;13-18,738-733	12-12,x-x[BULq];19-21,732-730[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GUAGUUGUA-AGAAUGUGUUG&CGACAUAUUCUAUAUAACAAU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s418_TRINITY_DN2758_c1_g1_740_TPlot.pdf
TRINITY_DN2758_c1_g1:741	si_s417	TRINITY_DN2758_c1_g1	731	750	741	-27.40	-18.30	0.667883211678832	6.5	2-12,749-739;14-19,738-733	1-1,750-750[UP5];13-13,x-x[BULq];20-21,732-731[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UAGUUGUA-AGAAUGUGUUGA&ACGACAUAUUCUAUAUAACAA	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s417_TRINITY_DN2758_c1_g1_741_TPlot.pdf
TRINITY_DN2758_c1_g1:742	si_s416	TRINITY_DN2758_c1_g1	732	751	742	-27.30	-18.30	0.67032967032967	7.5	3-13,749-739;15-20,738-733	1-2,751-750[UP5];14-14,x-x[BULq];21-21,732-732[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	AGUUGUA-AGAAUGUGUUGAC&AACGACAUAUUCUAUAUAACA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s416_TRINITY_DN2758_c1_g1_742_TPlot.pdf
TRINITY_DN2758_c1_g1:743	si_s415	TRINITY_DN2758_c1_g1	733	752	743	-26.60	-17.80	0.669172932330827	8.5	4-14,749-739;16-21,738-733	1-3,752-750[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GUUGUA-AGAAUGUGUUGACG&AAACGACAUAUUCUAUAUAAC	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN2758_c1_g1_743_TPlot.pdf
TRINITY_DN2758_c1_g1:751	si_s410	TRINITY_DN2758_c1_g1	737	760	751	-28.10	-19.00	0.676156583629893	9.5	1-10,760-751;11-19,747-739	x-x,750-748[BULt];20-21,738-737[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UAAGAAUGUGUUGACGUUUUUUGU&ACGAAAAACG---ACAUAUUCUAU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s410_TRINITY_DN2758_c1_g1_751_TPlot.pdf
TRINITY_DN2758_c1_g1:752	si_s409	TRINITY_DN2758_c1_g1	738	761	752	-29.90	-20.30	0.678929765886288	9	1-11,761-751;12-20,747-739	x-x,750-748[BULt];21-21,738-738[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	AAGAAUGUGUUGACGUUUUUUGUU&GACGAAAAACG---ACAUAUUCUA	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s409_TRINITY_DN2758_c1_g1_752_TPlot.pdf
TRINITY_DN2758_c1_g1:753	si_s408	TRINITY_DN2758_c1_g1	739	762	753	-30.20	-20.90	0.69205298013245	8.5	1-12,762-751;13-21,747-739	x-x,750-748[BULt]	(((((((((...((((((((((((&))))))))))))---)))))))))	AGAAUGUGUUGACGUUUUUUGUUU&AGACGAAAAACG---ACAUAUUCU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s408_TRINITY_DN2758_c1_g1_753_TPlot.pdf
TRINITY_DN2758_c1_g1:754	si_s407	TRINITY_DN2758_c1_g1	740	763	754	-29.50	-19.80	0.671186440677966	6.5	2-13,762-751;14-21,747-740	1-1,763-763[UP5];x-x,750-748[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	GAAUGUGUUGACGUUUUUUGUUUA&AAGACGAAAAACG---ACAUAUUC	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s407_TRINITY_DN2758_c1_g1_754_TPlot.pdf
TRINITY_DN27594_c1_g1:318	si_a884	TRINITY_DN27594_c1_g1	307	328	318	-25.60	-17.30	0.67578125	8.5	3-5,326-324;6-11,322-317;13-21,315-307	1-2,328-327[UP5];x-x,323-323[BULt];12-12,316-316[SIL]	(((((((((.((((((.(((..&..)))-)))))).)))))))))	UUGUUACUAGGUUGAUGUGCGU&UUGCA-AUCAAUAUAGUAAUAA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN27594_c1_g1_318_TPlot.pdf
TRINITY_DN275_c0_g1:1093	si_a550	TRINITY_DN275_c0_g1	1080	1103	1093	-30.90	-21.10	0.68284789644013	10.5	1-3,1103-1101;4-11,1099-1092;13-21,1088-1080	x-x,1100-1100[BULt];12-12,1091-1089[AILt]	(((((((((...((((((((.(((&)))-))))))))--.)))))))))	GGGAGAUAGUACGAGAUAGGCUUG&CAA-UCUAUUUC--UUUAUCUCCC	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN275_c0_g1_1093_TPlot.pdf
TRINITY_DN275_c0_g1:1214	si_s69	TRINITY_DN275_c0_g1	1202	1223	1214	-23.40	-16.50	0.705128205128205	6.5	3-8,1221-1216;10-18,1214-1206;19-21,1204-1202	1-2,1223-1222[UP5];9-9,1215-1215[SIL];x-x,1205-1205[BULt]	(((.(((((((((.((((((..&..)))))).)))))))))-)))	GAACAGAAGAAAAUUAGAAGGA&AACUUCUAUUUUUUUUCU-UUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN275_c0_g1_1214_TPlot.pdf
TRINITY_DN27602_c0_g1:452	si_s94	TRINITY_DN27602_c0_g1	440	461	452	-35.50	-25.60	0.72112676056338	5	1-11,461-451;12-16,449-445;19-20,442-441	x-x,450-450[BULt];17-18,444-443[SIL];21-21,440-440[UP3]	.((..(((((.(((((((((((&)))))))))))-)))))..)).	AAAGACGAAGACGAAGAAGAAG&CUUCUUCUUCG-CUUCGGAUUG	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN27602_c0_g1_452_TPlot.pdf
TRINITY_DN27606_c0_g1:261	si_s802	TRINITY_DN27606_c0_g1	250	270	261	-26.40	-17.90	0.678030303030303	10	3-12,268-259;14-18,257-253	1-2,270-269[UP5];13-13,258-258[SIL];19-21,252-250[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	AGCGGUGGAGAAGAUGAGAGU&UAUUUUAUCUUCGUUACCUUU	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN27606_c0_g1_261_TPlot.pdf
TRINITY_DN2761_c0_g1:3142	si_s806	TRINITY_DN2761_c0_g1	3131	3152	3142	-28.60	-19.40	0.678321678321678	7.5	2-5,3151-3148;7-8,3146-3145;9-19,3143-3133	1-1,3152-3152[UP5];6-6,3147-3147[SIL];x-x,3144-3144[BULt];20-21,3132-3131[UP3]	..(((((((((((.((.((((.&.)))).))-)))))))))))..	UCGAAAGGGUAACAGAUGAUAU&UUAUCUUC-GUUACCUUUUCUU	2	0.999990243530631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2761_c0_g1_3142_TPlot.pdf
TRINITY_DN2761_c0_g2:3420	si_a407	TRINITY_DN2761_c0_g2	3409	3429	3420	-19.80	-14.30	0.722222222222222	9.5	4-19,3426-3411	1-3,3429-3427[UP5];20-21,3410-3409[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAUUGAGUGUAAACAGAAAUG&UUGUUUUGUUUAUAUUUAAAU	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2761_c0_g2_3420_TPlot.pdf
TRINITY_DN27620_c0_g2:49	si_s85	TRINITY_DN27620_c0_g2	37	58	49	-33.80	-22.70	0.671597633136095	8	1-11,58-48;12-18,45-39;20-21,38-37	x-x,47-46[BULt];19-19,x-x[BULq]	((-(((((((..(((((((((((&)))))))))))--))))))).))	GC-AAGAAGGCCAGAAGGGAAGG&CUUUCCUUUCU--UCUUCUUCGC	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN27620_c0_g2_49_TPlot.pdf
TRINITY_DN2762_c0_g1:3306	si_a403	TRINITY_DN2762_c0_g1	3295	3315	3306	-22.00	-14.90	0.677272727272727	8	2-14,3314-3302	1-1,3315-3315[UP5];15-21,3301-3295[UP3]	.......(((((((((((((.&.))))))))))))).......	GCCAACCAACAAAACAAUUCG&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN2762_c0_g1_3306_TPlot.pdf
TRINITY_DN27635_c0_g1:336	si_s204	TRINITY_DN27635_c0_g1	325	347	336	-36.30	-25.50	0.702479338842975	9	1-7,347-341;8-9,339-338;10-20,336-326	x-x,340-340[BULt];x-x,337-337[BULt];21-21,325-325[UP3]	.(((((((((((.((.(((((((&)))))))-))-))))))))))).	AGAGCACGACUGAGUGGCGUUUC&GGAAUGU-AC-CAGUUGUGUUCG	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s204_TRINITY_DN27635_c0_g1_336_TPlot.pdf
TRINITY_DN27635_c0_g1:339	si_s202	TRINITY_DN27635_c0_g1	327	349	339	-33.60	-22.90	0.681547619047619	9	2-9,348-341;10-11,339-338;12-21,336-327	1-1,349-349[UP5];x-x,340-340[BULt];x-x,337-337[BULt]	((((((((((.((.((((((((.&.))))))))-))-))))))))))	AGCACGACUGAGUGGCGUUUCAU&UUGGAAUGU-AC-CAGUUGUGUU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN27635_c0_g1_339_TPlot.pdf
TRINITY_DN27653_c0_g1:1096	si_s678	TRINITY_DN27653_c0_g1	1085	1105	1096	-25.20	-17.20	0.682539682539683	9	3-9,1103-1097;11-20,1095-1086	1-2,1105-1104[UP5];10-10,1096-1096[SIL];21-21,1085-1085[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	AUGAAUUCAUGAUUCUGUGGA&AUUAUAGAAACAUGAGUUUAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN27653_c0_g1_1096_TPlot.pdf
TRINITY_DN27653_c0_g1:2349	si_a459	TRINITY_DN27653_c0_g1	2338	2358	2349	-23.20	-15.60	0.672413793103448	7.5	1-5,2358-2354;7-15,2352-2344;17-19,2342-2340	6-6,2353-2353[SIL];16-16,2343-2343[SIL];20-21,2339-2338[UP3]	..(((.(((((((((.(((((&))))).))))))))).)))..	AGACAAGUUGUAUAUUGCAAC&GUUGUUAUAUAUAAUAUGUAA	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN27653_c0_g1_2349_TPlot.pdf
TRINITY_DN27653_c0_g1:2350	si_a458	TRINITY_DN27653_c0_g1	2339	2359	2350	-23.80	-15.70	0.659663865546218	7	2-6,2358-2354;8-16,2352-2344;18-20,2342-2340	1-1,2359-2359[UP5];7-7,2353-2353[SIL];17-17,2343-2343[SIL];21-21,2339-2339[UP3]	.(((.(((((((((.(((((.&.))))).))))))))).))).	GACAAGUUGUAUAUUGCAACG&UGUUGUUAUAUAUAAUAUGUA	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN27653_c0_g1_2350_TPlot.pdf
TRINITY_DN27653_c0_g1:2351	si_a457	TRINITY_DN27653_c0_g1	2340	2360	2351	-23.50	-15.40	0.65531914893617	7	2-7,2359-2354;9-17,2352-2344;19-21,2342-2340	1-1,2360-2360[UP5];8-8,2353-2353[SIL];18-18,2343-2343[SIL]	(((.(((((((((.((((((.&.)))))).))))))))).)))	ACAAGUUGUAUAUUGCAACGC&UUGUUGUUAUAUAUAAUAUGU	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN27653_c0_g1_2351_TPlot.pdf
TRINITY_DN27653_c0_g1:2563	si_a455	TRINITY_DN27653_c0_g1	2552	2572	2563	-21.10	-14.30	0.677725118483412	7.5	1-13,2572-2560;15-17,2558-2556	14-14,2559-2559[SIL];18-21,2555-2552[UP3]	....(((.(((((((((((((&))))))))))))).)))....	ACUCUGUUUAUAGCAACAGUU&AAUUGUUGUUAUAUAUAAUAU	4	0.999998541607459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN27653_c0_g1_2563_TPlot.pdf
TRINITY_DN27653_c0_g1:2564	si_a454	TRINITY_DN27653_c0_g1	2553	2573	2564	-21.30	-14.30	0.671361502347418	7.5	2-14,2572-2560;16-18,2558-2556	1-1,2573-2573[UP5];15-15,2559-2559[SIL];19-21,2555-2553[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	CUCUGUUUAUAGCAACAGUUU&UAAUUGUUGUUAUAUAUAAUA	3	0.999997638163536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN27653_c0_g1_2564_TPlot.pdf
TRINITY_DN27653_c0_g1:2565	si_a453	TRINITY_DN27653_c0_g1	2554	2574	2565	-21.10	-14.30	0.677725118483412	8.5	3-15,2572-2560;17-19,2558-2556	1-2,2574-2573[UP5];16-16,2559-2559[SIL];20-21,2555-2554[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UCUGUUUAUAGCAACAGUUUU&AUAAUUGUUGUUAUAUAUAAU	4	0.999997750238143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN27653_c0_g1_2565_TPlot.pdf
TRINITY_DN27666_c0_g2:343	si_a4	TRINITY_DN27666_c0_g2	331	352	343	-31.60	-21.40	0.677215189873418	5.5	2-12,351-341;14-18,339-335;19-21,333-331	1-1,352-352[UP5];13-13,340-340[SIL];x-x,334-334[BULt]	(((.(((((.(((((((((((.&.))))))))))).)))))-)))	UGGUGCUUUGUCUUUAGUUUCC&UGAAAUUGAAGAGAAAGC-CUA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN27666_c0_g2_343_TPlot.pdf
TRINITY_DN2766_c0_g1:11978	si_s68	TRINITY_DN2766_c0_g1	11967	11987	11978	-23.10	-17.10	0.74025974025974	7	3-10,11985-11978;12-20,11976-11968	1-2,11987-11986[UP5];11-11,11977-11977[SIL];21-21,11967-11967[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UGAGAAGAAACAUAGAAGUGG&CAACUUCUAUUUUUUUUCUUU	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2766_c0_g1_11978_TPlot.pdf
TRINITY_DN2766_c0_g1:3572	si_s88	TRINITY_DN2766_c0_g1	3561	3580	3572	-34.80	-23.10	0.663793103448276	8.5	1-5,3580-3576;8-18,3574-3564;20-21,3562-3561	6-7,3575-3575[AILq];19-19,3563-3563[SIL]	((.(((((((((((.-(((((&)))))..))))))))))).))	GAUGCGGAGGAGGAU-GAGGA&UCCUUUCUUCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2766_c0_g1_3572_TPlot.pdf
TRINITY_DN2766_c0_g1:3574	si_s806	TRINITY_DN2766_c0_g1	3565	3583	3574	-28.60	-19.00	0.664335664335664	9.5	1-10,3583-3574;13-20,3573-3566	11-12,x-x[BULq];21-21,3565-3565[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	CGGAGGAGG--AUGAGGAUGA&UUAUCUUCGUUACCUUUUCUU	4	0.999999999994725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN2766_c0_g1_3574_TPlot.pdf
TRINITY_DN2766_c0_g1:3575	si_s805	TRINITY_DN2766_c0_g1	3566	3584	3575	-28.60	-19.20	0.671328671328671	8.5	2-11,3583-3574;14-21,3573-3566	1-1,3584-3584[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	GGAGGAGG--AUGAGGAUGAG&UUUAUCUUCGUUACCUUUUCU	4	0.999999997310997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN2766_c0_g1_3575_TPlot.pdf
TRINITY_DN2766_c0_g1:3577	si_s803	TRINITY_DN2766_c0_g1	3565	3586	3577	-26.00	-19.60	0.753846153846154	8.5	1-14,3586-3573;16-20,3570-3566	15-15,3572-3571[AILt];21-21,3565-3565[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	CGGAGGAGGAUGAGGAUGAGAU&AUUUUAUCUUCGUU-ACCUUUU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2766_c0_g1_3577_TPlot.pdf
TRINITY_DN2766_c0_g1:3583	si_s797	TRINITY_DN2766_c0_g1	3572	3593	3583	-30.00	-19.90	0.663333333333333	8.5	1-3,3593-3591;5-6,3589-3588;7-20,3586-3573	4-4,3590-3590[SIL];x-x,3587-3587[BULt];21-21,3572-3572[UP3]	.((((((((((((((.((.(((&))).))-)))))))))))))).	GGAUGAGGAUGAGAUAACCAGC&GCUCGU-AUUUUAUCUUCGUUA	4	0.999999882466628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2766_c0_g1_3583_TPlot.pdf
TRINITY_DN2766_c0_g1:388	si_s69	TRINITY_DN2766_c0_g1	378	397	388	-23.40	-15.90	0.67948717948718	10	3-13,395-385;16-21,383-378	1-2,397-396[UP5];14-15,384-384[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	GAAGGAU-GGGGAUGGAAGAU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2766_c0_g1_388_TPlot.pdf
TRINITY_DN2766_c0_g1:516	si_a637	TRINITY_DN2766_c0_g1	505	525	516	-25.80	-17.90	0.693798449612403	6.5	1-12,525-514;14-17,512-509	13-13,513-513[SIL];18-21,508-505[UP3]	....((((.((((((((((((&)))))))))))).))))....	UAGCUACUGAAAGAAAUCGAU&GUCGAUUUUUUUGAGUAAUAU	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN2766_c0_g1_516_TPlot.pdf
TRINITY_DN2766_c0_g1:517	si_a636	TRINITY_DN2766_c0_g1	506	526	517	-26.30	-17.90	0.680608365019011	7	2-13,525-514;15-18,512-509	1-1,526-526[UP5];14-14,513-513[SIL];19-21,508-506[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	AGCUACUGAAAGAAAUCGAUU&UGUCGAUUUUUUUGAGUAAUA	3	0.999998713244869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN2766_c0_g1_517_TPlot.pdf
TRINITY_DN2766_c0_g1:518	si_a635	TRINITY_DN2766_c0_g1	507	527	518	-26.10	-17.90	0.685823754789272	8	3-14,525-514;16-19,512-509	1-2,527-526[UP5];15-15,513-513[SIL];20-21,508-507[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	GCUACUGAAAGAAAUCGAUUG&AUGUCGAUUUUUUUGAGUAAU	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2766_c0_g1_518_TPlot.pdf
TRINITY_DN2766_c0_g1:520	si_a633	TRINITY_DN2766_c0_g1	509	529	520	-26.40	-17.60	0.666666666666667	9.5	5-16,525-514;18-21,512-509	1-4,529-526[UP5];17-17,513-513[SIL]	((((.((((((((((((....&....)))))))))))).))))	UACUGAAAGAAAUCGAUUGAG&UUAUGUCGAUUUUUUUGAGUA	4	0.999999995765342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2766_c0_g1_520_TPlot.pdf
TRINITY_DN2766_c0_g1:6164	si_a498	TRINITY_DN2766_c0_g1	6153	6173	6164	-33.50	-22.40	0.66865671641791	7	1-10,6173-6164;12-18,6162-6156	11-11,6163-6163[SIL];19-21,6155-6153[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	GCUGGAAGACCAAAGACGAUA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999982892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2766_c0_g1_6164_TPlot.pdf
TRINITY_DN2766_c0_g1:7235	si_s791	TRINITY_DN2766_c0_g1	7222	7245	7235	-28.50	-19.10	0.670175438596491	10	3-8,7243-7238;9-16,7236-7229;17-21,7226-7222	1-2,7245-7244[UP5];x-x,7237-7237[BULt];x-x,7228-7227[BULt]	(((((..((((((((.((((((..&..))))))-))))))))--)))))	AGAUGCAGAAUGCGGCGCUUGUGA&AAACAAGC-UCGUAUUU--UAUCU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN2766_c0_g1_7235_TPlot.pdf
TRINITY_DN2766_c0_g1:7549	si_a62	TRINITY_DN2766_c0_g1	7537	7558	7549	-32.20	-21.00	0.652173913043478	11	1-10,7558-7549;11-14,7547-7544	x-x,7548-7548[BULt];15-21,7543-7537[UP3]	.......((((.((((((((((&))))))))))-)))).......	CCUCCUCGAAGCGAGGCGAGUC&GACUCGCUUC-UUUCAAAUUGU	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN2766_c0_g1_7549_TPlot.pdf
TRINITY_DN2766_c0_g1:7551	si_a60	TRINITY_DN2766_c0_g1	7539	7560	7551	-32.20	-21.10	0.65527950310559	11.5	3-12,7558-7549;13-16,7547-7544	1-2,7560-7559[UP5];x-x,7548-7548[BULt];17-21,7543-7539[UP3]	.....((((.((((((((((..&..))))))))))-)))).....	UCCUCGAAGCGAGGCGAGUCAA&UCGACUCGCUUC-UUUCAAAUU	3	0.999946643592022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN2766_c0_g1_7551_TPlot.pdf
TRINITY_DN2766_c0_g1:9863	si_s203	TRINITY_DN2766_c0_g1	9852	9872	9863	-35.50	-24.80	0.698591549295775	7.5	2-5,9871-9868;7-14,9866-9859;16-21,9857-9852	1-1,9872-9872[UP5];6-6,9867-9867[SIL];15-15,9858-9858[SIL]	((((((.((((((((.((((.&.)))).)))))))).))))))	GAGCGCCGCUGGUGCCUUUCG&UGGAAUGUACCAGUUGUGUUC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN2766_c0_g1_9863_TPlot.pdf
TRINITY_DN27673_c0_g1:106	si_s808	TRINITY_DN27673_c0_g1	95	114	106	-28.60	-20.20	0.706293706293706	7	2-9,113-106;11-18,105-98	1-1,114-114[UP5];10-10,x-x[BULq];19-21,97-95[UP3]	...((((((((-((((((((.&.)))))))).))))))))...	AAUGGAAAGGG-AACGAAGAC&AUCUUCGUUACCUUUUCUUAA	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN27673_c0_g1_106_TPlot.pdf
TRINITY_DN27678_c0_g1:167	si_a361	TRINITY_DN27678_c0_g1	156	176	167	-29.00	-19.60	0.675862068965517	9	1-13,176-164;16-17,161-160	14-15,163-162[SIL];18-21,159-156[UP3]	....((..(((((((((((((&)))))))))))))..))....	CAUGGACACGAUCGAGAUGGA&UCUAUUUUGAUCGGAUCAAAA	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN27678_c0_g1_167_TPlot.pdf
TRINITY_DN27678_c0_g1:172	si_a356	TRINITY_DN27678_c0_g1	161	181	172	-26.90	-18.00	0.669144981412639	12.5	5-18,177-164	1-4,181-178[UP5];19-21,163-161[UP3]	...((((((((((((((....&....))))))))))))))...	ACACGAUCGAGAUGGAACAAC&UUAAUUCUAUUUUGAUCGGAU	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN27678_c0_g1_172_TPlot.pdf
TRINITY_DN2767_c0_g1:1253	si_a319	TRINITY_DN2767_c0_g1	1242	1263	1253	-22.40	-14.90	0.665178571428572	8.5	1-7,1263-1257;9-18,1254-1245	8-8,1256-1255[AILt];19-21,1244-1242[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AAAGAAAAAAUCAAAGGAUGAA&UUUAUCC-AUGAUUUUUUUAUU	2	0.999999995654792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2767_c0_g1_1253_TPlot.pdf
TRINITY_DN2767_c0_g1:4134	si_s796	TRINITY_DN2767_c0_g1	4123	4143	4134	-30.30	-19.80	0.653465346534653	7	2-5,4142-4139;7-12,4137-4132;14-21,4130-4123	1-1,4143-4143[UP5];6-6,4138-4138[SIL];13-13,4131-4131[SIL]	((((((((.((((((.((((.&.)))).)))))).))))))))	GAUGAAGAAGAAAUAGGAGUG&AGCUCGUAUUUUAUCUUCGUU	4	0.999999955453596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2767_c0_g1_4134_TPlot.pdf
TRINITY_DN2767_c0_g1:4405	si_s801	TRINITY_DN2767_c0_g1	4394	4413	4405	-28.20	-20.10	0.712765957446809	7.5	1-2,4413-4412;4-11,4411-4404;13-21,4402-4394	3-3,x-x[BULq];12-12,4403-4403[SIL]	(((((((((.((((((((-((&)).)))))))).)))))))))	GGGGUAGCGCAGAUGAAG-AC&GUAUUUUAUCUUCGUUACCUU	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN2767_c0_g1_4405_TPlot.pdf
TRINITY_DN2769_c0_g1:1099	si_a629	TRINITY_DN2769_c0_g1	1088	1111	1099	-26.30	-18.60	0.707224334600761	11.5	2-8,1110-1104;9-21,1100-1088	1-1,1111-1111[UP5];x-x,1103-1101[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	CGAAGAGAUCGAUAAAGUAGUACC&CGUAUUAU---GUCGAUUUUUUUG	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN2769_c0_g1_1099_TPlot.pdf
TRINITY_DN2769_c0_g1:2801	si_s803	TRINITY_DN2769_c0_g1	2791	2810	2801	-26.00	-19.30	0.742307692307692	6	2-10,2809-2801;12-21,2800-2791	1-1,2810-2810[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	AAGAGGUGAC-AAGGUGAAAC&AUUUUAUCUUCGUUACCUUUU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN2769_c0_g1_2801_TPlot.pdf
TRINITY_DN2769_c0_g1:318	si_a741	TRINITY_DN2769_c0_g1	307	327	318	-42.60	-28.20	0.661971830985915	5	2-12,326-316;14-14,314-314;16-16,312-312;18-21,310-307	1-1,327-327[UP5];13-13,315-315[SIL];15-15,313-313[SIL];17-17,311-311[SIL]	((((.(.(.(((((((((((.&.))))))))))).).).))))	GAGGAUGACGGUCAGGGGUAU&UUACCCCUGGCCAUGAACCUC	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a741_TRINITY_DN2769_c0_g1_318_TPlot.pdf
TRINITY_DN2769_c0_g1:324	si_s852	TRINITY_DN2769_c0_g1	314	340	324	-41.90	-27.50	0.656324582338902	19	1-8,340-333;9-14,325-320;16-19,319-316	x-x,332-326[BULt];15-15,x-x[BULq];20-21,315-314[UP3]	..((((-((((((.......((((((((&))))))))-------)))))).))))..	ACGGUC-AGGGGUAUUGUGGCGGCUCGC&GCGAGUCG-------ACUCCUAGACCUA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s852_TRINITY_DN2769_c0_g1_324_TPlot.pdf
TRINITY_DN2769_c0_g1:333	si_s850	TRINITY_DN2769_c0_g1	316	342	333	-41.50	-27.20	0.655421686746988	19.5	3-10,340-333;11-16,325-320;18-21,319-316	1-2,342-341[UP5];x-x,332-326[BULt];17-17,x-x[BULq]	((((-((((((.......((((((((..&..))))))))-------)))))).))))	GGUC-AGGGGUAUUGUGGCGGCUCGCGG&AAGCGAGUCG-------ACUCCUAGACC	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s850_TRINITY_DN2769_c0_g1_333_TPlot.pdf
TRINITY_DN2769_c0_g1:606	si_a43	TRINITY_DN2769_c0_g1	594	615	606	-42.30	-30.30	0.716312056737589	7.5	1-5,615-611;7-11,609-605;12-20,603-595	6-6,610-610[SIL];x-x,604-604[BULt];21-21,594-594[UP3]	.(((((((((.(((((.(((((&))))).)))))-))))))))).	GCGGCUCCUACGGCCUCCUGGU&ACCGGUAGGUC-UAGGAGUCGA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN2769_c0_g1_606_TPlot.pdf
TRINITY_DN2769_c0_g1:608	si_a41	TRINITY_DN2769_c0_g1	596	617	608	-42.50	-31.50	0.741176470588235	6.5	2-7,616-611;9-13,609-605;14-21,603-596	1-1,617-617[UP5];8-8,610-610[SIL];x-x,604-604[BULt]	((((((((.(((((.((((((.&.)))))).)))))-))))))))	GGCUCCUACGGCCUCCUGGUCG&AGACCGGUAGGUC-UAGGAGUC	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a41_TRINITY_DN2769_c0_g1_608_TPlot.pdf
TRINITY_DN2769_c0_g1:609	si_a40	TRINITY_DN2769_c0_g1	597	618	609	-40.50	-29.10	0.718518518518519	8	3-8,616-611;10-14,609-605;15-21,603-597	1-2,618-617[UP5];9-9,610-610[SIL];x-x,604-604[BULt]	(((((((.(((((.((((((..&..)))))).)))))-)))))))	GCUCCUACGGCCUCCUGGUCGG&AAGACCGGUAGGUC-UAGGAGU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN2769_c0_g1_609_TPlot.pdf
TRINITY_DN2771_c0_g1:490	si_a639	TRINITY_DN2771_c0_g1	479	501	490	-23.60	-18.20	0.771186440677966	7.5	2-8,500-494;9-21,491-479	1-1,501-501[UP5];x-x,493-492[BULt]	(((((((((((((..(((((((.&.)))))))--)))))))))))))	AUGUAUUACUCGAUCAAAAGUCU&CGAUUUUU--UUGAGUAAUAUAU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN2771_c0_g1_490_TPlot.pdf
TRINITY_DN2771_c0_g1:618	si_s770	TRINITY_DN2771_c0_g1	607	628	618	-26.60	-18.30	0.68796992481203	8	1-5,628-624;7-18,621-610	6-6,623-622[AILt];19-21,609-607[UP3]	...((((((((((((..(((((&)))))-.))))))))))))...	CAGGGUAAUAGUAAUGAAAUCG&CGAUU-AAUUACUAUUGCUAUA	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN2771_c0_g1_618_TPlot.pdf
TRINITY_DN2771_c0_g1:619	si_s769	TRINITY_DN2771_c0_g1	608	629	619	-27.00	-18.30	0.677777777777778	8	2-6,628-624;8-19,621-610	1-1,629-629[UP5];7-7,623-622[AILt];20-21,609-608[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	AGGGUAAUAGUAAUGAAAUCGA&ACGAUU-AAUUACUAUUGCUAU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN2771_c0_g1_619_TPlot.pdf
TRINITY_DN2771_c0_g1:620	si_s768	TRINITY_DN2771_c0_g1	609	630	620	-26.80	-18.30	0.682835820895522	9	3-7,628-624;9-20,621-610	1-2,630-629[UP5];8-8,623-622[AILt];21-21,609-609[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	GGGUAAUAGUAAUGAAAUCGAA&AACGAUU-AAUUACUAUUGCUA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN2771_c0_g1_620_TPlot.pdf
TRINITY_DN27722_c0_g1:318	si_a119	TRINITY_DN27722_c0_g1	307	327	318	-30.30	-20.40	0.673267326732673	8	1-9,327-319;11-18,317-310	10-10,318-318[SIL];19-21,309-307[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UCGUGUUGUAAUAUGAGCUCG&CGAGCUUGUUUUAUAGCAAUA	2	0.975189943484374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN27722_c0_g1_318_TPlot.pdf
TRINITY_DN2772_c0_g1:2890	si_s393	TRINITY_DN2772_c0_g1	2880	2901	2890	-34.90	-23.60	0.67621776504298	9	1-5,2901-2897;7-15,2893-2885;17-20,2884-2881	6-6,2896-2894[AILt];16-16,x-x[BULq];21-21,2880-2880[UP3]	.((((-(((((((((...(((((&)))))--.))))))))).)))).	GCGUC-UCCUUGGAAGGAGUAGG&CUUAC--AUUCCAAGGAAGACGA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s393_TRINITY_DN2772_c0_g1_2890_TPlot.pdf
TRINITY_DN2772_c0_g1:4765	si_a317	TRINITY_DN2772_c0_g1	4754	4774	4765	-24.30	-20.00	0.823045267489712	4.5	1-14,4774-4761;16-20,4759-4755	15-15,4760-4760[SIL];21-21,4754-4754[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AGAGAAUAUCGUGGAUAAAUU&GAUUUAUCCAUGAUUUUUUUA	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2772_c0_g1_4765_TPlot.pdf
TRINITY_DN2772_c0_g1:6517	si_s816	TRINITY_DN2772_c0_g1	6506	6528	6517	-24.90	-16.30	0.654618473895582	12.5	1-5,6528-6524;6-18,6521-6509	x-x,6523-6522[BULt];19-21,6508-6506[UP3]	...(((((((((((((..(((((&)))))--)))))))))))))...	AAACAUUGUUAGGGGGGUGGGUA&UACCU--UUUCUUAAUAAUGAAA	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN2772_c0_g1_6517_TPlot.pdf
TRINITY_DN2772_c0_g1:6518	si_s815	TRINITY_DN2772_c0_g1	6507	6529	6518	-25.00	-16.70	0.668	12	1-6,6529-6524;7-19,6521-6509	x-x,6523-6522[BULt];20-21,6508-6507[UP3]	..(((((((((((((..((((((&))))))--)))))))))))))..	AACAUUGUUAGGGGGGUGGGUAG&UUACCU--UUUCUUAAUAAUGAA	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN2772_c0_g1_6518_TPlot.pdf
TRINITY_DN2772_c0_g1:6519	si_s814	TRINITY_DN2772_c0_g1	6508	6530	6519	-26.60	-20.10	0.755639097744361	11.5	1-7,6530-6524;8-20,6521-6509	x-x,6523-6522[BULt];21-21,6508-6508[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	ACAUUGUUAGGGGGGUGGGUAGC&GUUACCU--UUUCUUAAUAAUGA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN2772_c0_g1_6519_TPlot.pdf
TRINITY_DN2772_c0_g1:6521	si_s812	TRINITY_DN2772_c0_g1	6510	6532	6521	-26.40	-17.40	0.659090909090909	13	3-9,6530-6524;10-21,6521-6510	1-2,6532-6531[UP5];x-x,6523-6522[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	AUUGUUAGGGGGGUGGGUAGCUC&UCGUUACCU--UUUCUUAAUAAU	4	0.999997346277844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN2772_c0_g1_6521_TPlot.pdf
TRINITY_DN2772_c1_g1:1070	si_a787	TRINITY_DN2772_c1_g1	1059	1080	1070	-26.30	-17.30	0.657794676806084	13.5	1-6,1080-1075;11-20,1069-1060	7-10,1074-1070[AILt];21-21,1059-1059[UP3]	.((((((((((.....((((((&))))))-....)))))))))).	AGGAAAAUGGACCUACUGGAGG&CUUCUA-UUUUUCUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2772_c1_g1_1070_TPlot.pdf
TRINITY_DN2772_c1_g1:2545	si_s62	TRINITY_DN2772_c1_g1	2533	2554	2545	-26.50	-17.50	0.660377358490566	6	1-11,2554-2544;12-13,2542-2541;15-21,2539-2533	x-x,2543-2543[BULt];14-14,2540-2540[SIL]	(((((((.((.(((((((((((&)))))))))))-)).)))))))	GAGAAAUCGAUAGUUGUUGACU&AGUUAGCAACU-UCUAUUUUUU	4	0.999992075111343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN2772_c1_g1_2545_TPlot.pdf
TRINITY_DN2772_c1_g1:3352	si_s422	TRINITY_DN2772_c1_g1	3341	3361	3352	-21.30	-17.20	0.807511737089202	8	1-4,3361-3358;6-19,3356-3343	5-5,3357-3357[SIL];20-21,3342-3341[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	UUUUAUUGUUGUGUAGUGUGU&AUAUUCUAUAUAACAAUAAUU	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2772_c1_g1_3352_TPlot.pdf
TRINITY_DN2772_c1_g1:3353	si_s421	TRINITY_DN2772_c1_g1	3342	3362	3353	-23.00	-17.20	0.747826086956522	8	2-5,3361-3358;7-20,3356-3343	1-1,3362-3362[UP5];6-6,3357-3357[SIL];21-21,3342-3342[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UUUAUUGUUGUGUAGUGUGUA&CAUAUUCUAUAUAACAAUAAU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN2772_c1_g1_3353_TPlot.pdf
TRINITY_DN2772_c3_g1:2307	si_a462	TRINITY_DN2772_c3_g1	2296	2316	2307	-21.20	-14.30	0.674528301886792	6	1-12,2316-2305;14-19,2303-2298	13-13,2304-2304[SIL];20-21,2297-2296[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AUGUUGCGAAUUGUAUAUAAU&GUUAUAUAUAAUAUGUAAUUA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN2772_c3_g1_2307_TPlot.pdf
TRINITY_DN2772_c3_g1:2308	si_a461	TRINITY_DN2772_c3_g1	2297	2317	2308	-21.50	-15.10	0.702325581395349	5.5	1-13,2317-2305;15-20,2303-2298	14-14,2304-2304[SIL];21-21,2297-2297[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UGUUGCGAAUUGUAUAUAAUA&UGUUAUAUAUAAUAUGUAAUU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN2772_c3_g1_2308_TPlot.pdf
TRINITY_DN2773_c0_g2:467	si_a356	TRINITY_DN2773_c0_g2	456	476	467	-26.90	-18.00	0.669144981412639	9.5	4-18,473-459	1-3,476-474[UP5];19-21,458-456[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAUUGAUCAAGAUAGAAUAUU&UUAAUUCUAUUUUGAUCGGAU	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2773_c0_g2_467_TPlot.pdf
TRINITY_DN2773_c0_g2:472	si_a351	TRINITY_DN2773_c0_g2	461	481	472	-20.50	-13.90	0.678048780487805	15.5	9-21,473-461	1-8,481-474[UP5]	(((((((((((((........&........)))))))))))))	AUCAAGAUAGAAUAUUAAUCC&AAAUAUUAAUUCUAUUUUGAU	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2773_c0_g2_472_TPlot.pdf
TRINITY_DN27740_c0_g1:32	si_s740	TRINITY_DN27740_c0_g1	21	46	32	-35.20	-24.30	0.690340909090909	14.5	2-5,45-42;6-21,36-21	1-1,46-46[UP5];x-x,41-37[BULt]	((((((((((((((((.....((((.&.))))-----))))))))))))))))	UAGGGUUAGUCUGUUUUGACUACCCA&CGGGU-----GAAUAGAUUGACCUUA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN27740_c0_g1_32_TPlot.pdf
TRINITY_DN27743_c0_g1:633	si_a445	TRINITY_DN27743_c0_g1	620	642	633	-27.30	-17.90	0.655677655677656	12	1-10,642-633;12-18,629-623	11-11,632-630[AILt];19-21,622-620[UP3]	...(((((((...((((((((((&))))))))))--.)))))))...	CCUCAGCAGUACGAUCUCGUGUC&GAUAUGAGAU--AAUUGUUGUUA	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN27743_c0_g1_633_TPlot.pdf
TRINITY_DN27749_c0_g1:109	si_a139	TRINITY_DN27749_c0_g1	97	118	109	-25.90	-16.90	0.652509652509653	8.5	2-3,117-116;5-17,114-102;18-21,100-97	1-1,118-118[UP5];4-4,115-115[SIL];x-x,101-101[BULt]	((((.(((((((((((((.((.&.)).)))))))))))))-))))	GGGCGAACAACGGUUGGUAACA&AGUAAUUAAUCGUUGUU-GUUU	3	0.999996864296552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN27749_c0_g1_109_TPlot.pdf
TRINITY_DN2774_c0_g1:2325	si_s821	TRINITY_DN2774_c0_g1	2314	2334	2325	-22.20	-15.60	0.702702702702703	6.5	3-10,2332-2325;12-21,2323-2314	1-2,2334-2333[UP5];11-11,2324-2324[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UUGUUUUUUACUGUUAAGAUU&UUUCUUAAUAAUGAAAAACAA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN2774_c0_g1_2325_TPlot.pdf
TRINITY_DN2776_c0_g1:1221	si_s891	TRINITY_DN2776_c0_g1	1210	1230	1221	-29.60	-20.30	0.685810810810811	14.5	8-21,1223-1210	1-7,1230-1224[UP5]	((((((((((((((.......&.......))))))))))))))	UUGGAGAGAAAGUCAGAAGCG&AUAAAUAGGCUUUCUCUUCAA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN2776_c0_g1_1221_TPlot.pdf
TRINITY_DN27777_c0_g1:3947	si_a594	TRINITY_DN27777_c0_g1	3936	3956	3947	-32.30	-22.20	0.687306501547988	6.5	1-10,3956-3947;12-18,3945-3939	11-11,3946-3946[SIL];19-21,3938-3936[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	CGGGUGAAAACUCUGUUCUUC&GAAGGACAGAAUUUUCGCAAU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN27777_c0_g1_3947_TPlot.pdf
TRINITY_DN27777_c0_g1:3949	si_a592	TRINITY_DN27777_c0_g1	3938	3958	3949	-32.80	-22.40	0.682926829268293	6.5	3-12,3956-3947;14-20,3945-3939	1-2,3958-3957[UP5];13-13,3946-3946[SIL];21-21,3938-3938[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	GGUGAAAACUCUGUUCUUCCG&AAGAAGGACAGAAUUUUCGCA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN27777_c0_g1_3949_TPlot.pdf
TRINITY_DN27777_c0_g2:958	si_s86	TRINITY_DN27777_c0_g2	948	969	958	-32.90	-21.40	0.650455927051672	8	1-7,969-963;8-11,960-957;13-20,956-949	x-x,962-961[BULt];12-12,x-x[BULq];21-21,948-948[UP3]	.((((((((-((((..(((((((&)))))))--)))).)))))))).	CGCGAAGAA-AAGAUUAAGGAGA&UUUCCUU--UCUUCUUCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN27777_c0_g2_958_TPlot.pdf
TRINITY_DN27777_c0_g2:960	si_s84	TRINITY_DN27777_c0_g2	950	971	960	-32.30	-22.00	0.681114551083591	6	1-9,971-963;10-13,960-957;15-21,956-950	x-x,962-961[BULt];14-14,x-x[BULq]	(((((((-((((..(((((((((&)))))))))--)))).)))))))	CGAAGAA-AAGAUUAAGGAGAGA&UCUUUCCUU--UCUUCUUCUUCG	1	0.344477412392139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN27777_c0_g2_960_TPlot.pdf
TRINITY_DN27789_c0_g1:39	si_s68	TRINITY_DN27789_c0_g1	28	48	39	-23.10	-16.70	0.722943722943723	7.5	4-9,45-40;11-21,38-28	1-3,48-46[UP5];10-10,39-39[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAAAAAAAUUAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN27789_c0_g1_39_TPlot.pdf
TRINITY_DN2778_c0_g1:272	si_a757	TRINITY_DN2778_c0_g1	261	283	272	-33.10	-23.10	0.697885196374622	10	1-8,283-276;10-14,272-268;16-20,266-262	9-9,275-273[AILt];15-15,267-267[SIL];21-21,261-261[UP3]	.(((((.(((((...((((((((&))))))))--.))))).))))).	CAUCGACAGCCCUUCGAGGAGGU&ACCUCCUU--UGGGUUUUUGAUU	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN2778_c0_g1_272_TPlot.pdf
TRINITY_DN2778_c0_g1:983	si_s72	TRINITY_DN2778_c0_g1	972	992	983	-24.10	-16.10	0.66804979253112	6.5	1-15,992-978;17-18,976-975	16-16,977-977[SIL];19-21,974-972[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UUCGAUGGAAAAGAAAUAGGA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2778_c0_g1_983_TPlot.pdf
TRINITY_DN2778_c0_g1:986	si_s69	TRINITY_DN2778_c0_g1	975	995	986	-23.40	-16.30	0.696581196581197	8.5	4-18,992-978;20-21,976-975	1-3,995-993[UP5];19-19,977-977[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAUGGAAAAGAAAUAGGAUAC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2778_c0_g1_986_TPlot.pdf
TRINITY_DN2779_c0_g1:1319	si_a760	TRINITY_DN2779_c0_g1	1308	1328	1319	-31.10	-20.40	0.655948553054662	9.5	1-8,1328-1321;11-19,1318-1310	9-10,1320-1319[SIL];20-21,1309-1308[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	CCCGAUCAAGAGACUGAAGGA&UCCUUUGGGUUUUUGAUUGAU	3	0.999999998680878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2779_c0_g1_1319_TPlot.pdf
TRINITY_DN2779_c0_g1:1630	si_a320	TRINITY_DN2779_c0_g1	1617	1639	1630	-24.40	-16.90	0.692622950819672	10.5	4-13,1636-1627;14-21,1624-1617	1-3,1639-1637[UP5];x-x,1626-1625[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	GAAUGGAAGAGAGUCAUGGGGGU&UUAUCCAUGAUUU--UUUUAUUC	2	0.996018473863355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN2779_c0_g1_1630_TPlot.pdf
TRINITY_DN2779_c0_g1:1632	si_a318	TRINITY_DN2779_c0_g1	1621	1641	1632	-22.50	-15.80	0.702222222222222	13.5	6-19,1636-1623	1-5,1641-1637[UP5];20-21,1622-1621[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGAAGAGAGUCAUGGGGGUGU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2779_c0_g1_1632_TPlot.pdf
TRINITY_DN2779_c0_g1:1633	si_a317	TRINITY_DN2779_c0_g1	1622	1647	1633	-24.30	-15.80	0.650205761316872	18.5	1-5,1647-1643;8-20,1635-1623	6-7,1642-1636[AILt];21-21,1622-1622[UP3]	.(((((((((((((.......(((((&)))))-----..))))))))))))).	GAAGAGAGUCAUGGGGGUGUGAGGUC&GAUUU-----AUCCAUGAUUUUUUUA	2	0.999999892210528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2779_c0_g1_1633_TPlot.pdf
TRINITY_DN2779_c0_g1:1788	si_s376	TRINITY_DN2779_c0_g1	1777	1797	1788	-42.50	-29.10	0.684705882352941	9	1-4,1797-1794;6-9,1792-1789;11-18,1787-1780	5-5,1793-1793[SIL];10-10,1788-1788[SIL];19-21,1779-1777[UP3]	...((((((((.((((.((((&)))).)))).))))))))...	CGCGGCGGACGGGCGGACGAU&AUCGCUCGCGUGUCCGCCUUA	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN2779_c0_g1_1788_TPlot.pdf
TRINITY_DN2779_c0_g1:719	si_a555	TRINITY_DN2779_c0_g1	708	727	719	-33.70	-23.40	0.694362017804154	10.5	4-8,724-720;10-20,719-709	1-3,727-725[UP5];9-9,x-x[BULq];21-21,708-708[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	GUACGGGGAGAU-GAGAGUGU&UAUUUCUUUAUCUCCCCGUGA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN2779_c0_g1_719_TPlot.pdf
TRINITY_DN277_c0_g1:1052	si_a784	TRINITY_DN277_c0_g1	1041	1062	1052	-24.70	-16.92	0.68502024291498	11	2-8,1061-1055;12-21,1050-1041	1-1,1062-1062[UP5];9-11,1054-1051[AILt]	((((((((((....(((((((.&.)))))))-...))))))))))	GGGAUAGAGAUGAAAGAAGAGG&ACUCUUCU-AUUUUUCUAUUUU	3	0.999999999997568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN277_c0_g1_1052_TPlot.pdf
TRINITY_DN277_c0_g1:1053	si_a783	TRINITY_DN277_c0_g1	1042	1063	1053	-24.70	-16.62	0.672874493927126	12.5	3-9,1061-1055;13-21,1050-1042	1-2,1063-1062[UP5];10-12,1054-1051[AILt]	(((((((((....(((((((..&..)))))))-...)))))))))	GGAUAGAGAUGAAAGAAGAGGG&AACUCUUCU-AUUUUUCUAUUU	2	0.99999999648342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN277_c0_g1_1053_TPlot.pdf
TRINITY_DN277_c0_g1:1055	si_a782	TRINITY_DN277_c0_g1	1043	1064	1055	-26.40	-17.52	0.663636363636364	12	1-1,1064-1064;4-10,1061-1055;14-21,1050-1043	2-3,1063-1062[SIL];11-13,1054-1051[AILt]	((((((((....(((((((..(&)..)))))))-...))))))))	GAUAGAGAUGAAAGAAGAGGGG&CAACUCUUCU-AUUUUUCUAUU	2	0.999986002637681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN277_c0_g1_1055_TPlot.pdf
TRINITY_DN277_c0_g1:1087	si_a331	TRINITY_DN277_c0_g1	1076	1096	1087	-30.60	-22.50	0.735294117647059	7	2-8,1095-1089;10-13,1087-1084;15-21,1082-1076	1-1,1096-1096[UP5];9-9,1088-1088[SIL];14-14,1083-1083[SIL]	(((((((.((((.(((((((.&.))))))).)))).)))))))	UUCGGGGGGAGGUAUGAAGAU&UUUUUUAUUCCUUGUCCCGAA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN277_c0_g1_1087_TPlot.pdf
TRINITY_DN277_c0_g1:1093	si_s802	TRINITY_DN277_c0_g1	1083	1102	1093	-26.40	-18.30	0.693181818181818	7.5	4-14,1099-1089;16-21,1088-1083	1-3,1102-1100[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GGAGGU-AUGAAGAUAAAGAA&UAUUUUAUCUUCGUUACCUUU	3	0.999994126720142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN277_c0_g1_1093_TPlot.pdf
TRINITY_DN277_c0_g1:1097	si_s88	TRINITY_DN277_c0_g1	1084	1106	1097	-34.80	-23.10	0.663793103448276	7	1-9,1106-1098;12-16,1095-1091;17-21,1088-1084	10-11,1097-1096[SIL];x-x,1090-1089[BULt]	(((((..(((((..(((((((((&)))))))))..)))))--)))))	GAGGUAUGAAGAUAAAGAAAGGA&UCCUUUCUUCUUCUUC--GCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN277_c0_g1_1097_TPlot.pdf
TRINITY_DN277_c0_g1:1100	si_s85	TRINITY_DN277_c0_g1	1089	1109	1100	-33.80	-24.10	0.71301775147929	4.5	1-12,1109-1098;15-20,1095-1090	13-14,1097-1096[SIL];21-21,1089-1089[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	AUGAAGAUAAAGAAAGGAGAG&CUUUCCUUUCUUCUUCUUCGC	2	0.999700946789536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN277_c0_g1_1100_TPlot.pdf
TRINITY_DN277_c0_g1:1102	si_s83	TRINITY_DN277_c0_g1	1091	1111	1102	-30.90	-24.90	0.805825242718447	4	2-14,1110-1098;17-21,1095-1091	1-1,1111-1111[UP5];15-16,1097-1096[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	GAAGAUAAAGAAAGGAGAGAC&UUCUUUCCUUUCUUCUUCUUC	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN277_c0_g1_1102_TPlot.pdf
TRINITY_DN277_c0_g1:1116	si_a67	TRINITY_DN277_c0_g1	1105	1128	1116	-27.20	-18.60	0.683823529411765	12	2-9,1127-1120;10-21,1116-1105	1-1,1128-1128[UP5];x-x,1119-1117[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	GAGAGACGGUUUUUCGAGAGGGGG&GCUUCUUUC---AAAUUGUUUUUC	4	0.99999989399243	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN277_c0_g1_1116_TPlot.pdf
TRINITY_DN277_c0_g1:1409	si_s806	TRINITY_DN277_c0_g1	1398	1418	1409	-28.60	-19.50	0.681818181818182	6	2-7,1417-1412;9-14,1410-1405;16-21,1403-1398	1-1,1418-1418[UP5];8-8,1411-1411[SIL];15-15,1404-1404[SIL]	((((((.((((((.((((((.&.)))))).)))))).))))))	GAGAGACGGUAGCAAAGAUAG&UUAUCUUCGUUACCUUUUCUU	3	0.99999997079684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN277_c0_g1_1409_TPlot.pdf
TRINITY_DN277_c0_g1:498	si_s891	TRINITY_DN277_c0_g1	486	507	498	-29.60	-19.80	0.668918918918919	11	4-17,504-491;18-19,489-488	1-3,507-505[UP5];x-x,490-490[BULt];20-21,487-486[UP3]	..((.((((((((((((((...&...))))))))))))))-))..	AAGACAGAGAGAGCUUGUUAGA&AUAAAUAGGCUUUCUCU-UCAA	3	0.999945552445062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN277_c0_g1_498_TPlot.pdf
TRINITY_DN277_c0_g1:947	si_s70	TRINITY_DN277_c0_g1	936	955	947	-25.80	-18.70	0.724806201550388	9.5	1-9,955-947;15-21,942-936	10-14,946-943[AILq]	(((((((....-(((((((((&))))))))).....)))))))	GGAGAGAUGGC-GAUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN277_c0_g1_947_TPlot.pdf
TRINITY_DN2780_c0_g1:1016	si_s800	TRINITY_DN2780_c0_g1	1005	1025	1016	-29.70	-20.20	0.68013468013468	8.5	2-6,1024-1020;8-17,1018-1009;19-20,1007-1006	1-1,1025-1025[UP5];7-7,1019-1019[SIL];18-18,1008-1008[SIL];21-21,1005-1005[UP3]	.((.((((((((((.(((((.&.))))).)))))))))).)).	CGGCGACGAGGAUGUAAUGCU&CGUAUUUUAUCUUCGUUACCU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN2780_c0_g1_1016_TPlot.pdf
TRINITY_DN2781_c0_g1:423	si_s74	TRINITY_DN2781_c0_g1	412	433	423	-25.00	-17.30	0.692	8	1-7,433-427;8-17,425-416	x-x,426-426[BULt];18-21,415-412[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	AUAUGGAAAGAAGAUAAAGUAG&CUAUUUU-UUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2781_c0_g1_423_TPlot.pdf
TRINITY_DN27822_c0_g2:3254	si_s218	TRINITY_DN27822_c0_g2	3243	3263	3254	-35.50	-24.10	0.67887323943662	9	1-4,3263-3260;6-9,3259-3256;10-17,3254-3247	5-5,x-x[BULq];x-x,3255-3255[BULt];18-21,3246-3243[UP3]	....((((((((.((((-((((&)))).))))-))))))))....	AGCGCACGCGGUGUUCG-ACGC&GUGUUCGAA-ACCGCGUGAAUA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN27822_c0_g2_3254_TPlot.pdf
TRINITY_DN27822_c0_g2:3256	si_s217	TRINITY_DN27822_c0_g2	3244	3264	3256	-35.80	-25.10	0.701117318435754	8	1-5,3264-3260;7-10,3259-3256;11-18,3254-3247	6-6,x-x[BULq];x-x,3255-3255[BULt];19-21,3246-3244[UP3]	...((((((((.((((-(((((&))))).))))-))))))))...	GCGCACGCGGUGUUCG-ACGCA&UGUGUUCGAA-ACCGCGUGAAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN27822_c0_g2_3256_TPlot.pdf
TRINITY_DN2782_c0_g1:755	si_s746	TRINITY_DN2782_c0_g1	737	764	755	-27.00	-17.90	0.662962962962963	8	1-10,764-755;11-15,753-749;16-21,742-737	x-x,754-754[BULt];x-x,748-743[BULt]	((((((......(((((.((((((((((&))))))))))-)))))------))))))	UUGUUUAUUUCAUAAGGUUCAAUCUAUU&AAUAGAUUGA-CCUUA------AAACAA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN2782_c0_g1_755_TPlot.pdf
TRINITY_DN2782_c0_g1:760	si_s357	TRINITY_DN2782_c0_g1	749	769	760	-28.70	-20.20	0.70383275261324	9	4-18,766-752	1-3,769-767[UP5];19-21,751-749[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAAGGUUCAAUCUAUUUUGUA&AAAGAAAUAGAUUGAACCGAU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN2782_c0_g1_760_TPlot.pdf
TRINITY_DN2782_c0_g1:764	si_s353	TRINITY_DN2782_c0_g1	753	772	764	-26.90	-18.10	0.672862453531599	7	2-5,771-768;8-21,766-753	1-1,772-772[UP5];6-7,767-767[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	GUUCAAUCUAUUUUG-UAUUA&AGAUAAAGAAAUAGAUUGAAC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN2782_c0_g1_764_TPlot.pdf
TRINITY_DN27833_c0_g1:94	si_s598	TRINITY_DN27833_c0_g1	82	103	94	-28.20	-20.40	0.723404255319149	7	1-14,103-90;16-18,87-85	15-15,89-88[AILt];19-21,84-82[UP3]	...(((..((((((((((((((&))))))))))))))-.)))...	UGUGAGUUUUCGCUUGGGUUUG&UAAAUCCAAGCGAA-UCUUUUU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN27833_c0_g1_94_TPlot.pdf
TRINITY_DN27837_c0_g1:1259	si_s710	TRINITY_DN27837_c0_g1	1247	1268	1259	-32.00	-21.40	0.66875	7	3-7,1266-1262;9-13,1260-1256;14-21,1254-1247	1-2,1268-1267[UP5];8-8,1261-1261[SIL];x-x,1255-1255[BULt]	((((((((.(((((.(((((..&..))))).)))))-))))))))	UAUCUUUCUCCUGUAUACUAUU&AUUAGUGAACAGG-GAAAGAUA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s710_TRINITY_DN27837_c0_g1_1259_TPlot.pdf
TRINITY_DN27837_c0_g1:1804	si_a497	TRINITY_DN27837_c0_g1	1790	1813	1804	-32.00	-23.20	0.725	6.5	2-15,1812-1799;16-20,1795-1791	1-1,1813-1813[UP5];x-x,1798-1796[BULt];21-21,1790-1790[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	CAGGAGUAUGACGAAAAACGAUAC&AUGUCGUUUUUCGUC---UUCCUU	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN27837_c0_g1_1804_TPlot.pdf
TRINITY_DN27837_c0_g1:1805	si_a496	TRINITY_DN27837_c0_g1	1791	1814	1805	-32.40	-23.20	0.716049382716049	7.5	3-16,1812-1799;17-21,1795-1791	1-2,1814-1813[UP5];x-x,1798-1796[BULt]	(((((...((((((((((((((..&..))))))))))))))---)))))	AGGAGUAUGACGAAAAACGAUACA&UAUGUCGUUUUUCGUC---UUCCU	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN27837_c0_g1_1805_TPlot.pdf
TRINITY_DN27837_c0_g1:1806	si_a495	TRINITY_DN27837_c0_g1	1792	1815	1806	-31.90	-22.00	0.689655172413793	9.5	4-17,1812-1799;18-21,1795-1792	1-3,1815-1813[UP5];x-x,1798-1796[BULt]	((((...((((((((((((((...&...))))))))))))))---))))	GGAGUAUGACGAAAAACGAUACAA&AUAUGUCGUUUUUCGUC---UUCC	3	0.999991195257928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN27837_c0_g1_1806_TPlot.pdf
TRINITY_DN27837_c0_g1:1807	si_a494	TRINITY_DN27837_c0_g1	1796	1816	1807	-29.50	-19.60	0.664406779661017	11	5-18,1812-1799	1-4,1816-1813[UP5];19-21,1798-1796[UP3]	...((((((((((((((....&....))))))))))))))...	UAUGACGAAAAACGAUACAAU&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999995159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN27837_c0_g1_1807_TPlot.pdf
TRINITY_DN27837_c0_g1:1808	si_a493	TRINITY_DN27837_c0_g1	1797	1817	1808	-29.50	-19.60	0.664406779661017	12	6-19,1812-1799	1-5,1817-1813[UP5];20-21,1798-1797[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUGACGAAAAACGAUACAAUG&GAAUAUGUCGUUUUUCGUCUU	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN27837_c0_g1_1808_TPlot.pdf
TRINITY_DN27837_c0_g1:1809	si_a492	TRINITY_DN27837_c0_g1	1798	1824	1809	-30.20	-19.76	0.654304635761589	17	1-5,1824-1820;7-20,1812-1799	6-6,1819-1813[AILt];21-21,1798-1798[UP3]	.((((((((((((((.......(((((&)))))------.)))))))))))))).	UGACGAAAAACGAUACAAUGAAGUUCU&AGAAU------AUGUCGUUUUUCGUCU	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN27837_c0_g1_1809_TPlot.pdf
TRINITY_DN27837_c0_g1:1810	si_a491	TRINITY_DN27837_c0_g1	1799	1825	1810	-29.90	-20.66	0.690969899665552	16	1-6,1825-1820;8-21,1812-1799	7-7,1819-1813[AILt]	((((((((((((((.......((((((&))))))------.))))))))))))))	GACGAAAAACGAUACAAUGAAGUUCUA&UAGAAU------AUGUCGUUUUUCGUC	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN27837_c0_g1_1810_TPlot.pdf
TRINITY_DN27837_c0_g1:2686	si_s549	TRINITY_DN27837_c0_g1	2674	2695	2686	-20.50	-13.80	0.673170731707317	6	2-14,2694-2682;17-21,2678-2674	1-1,2695-2695[UP5];15-16,2681-2679[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	AGAUGACGAAUUCUGUUUUGAA&AUCAAAAUAGAAUU-AAUAUUU	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN27837_c0_g1_2686_TPlot.pdf
TRINITY_DN27837_c0_g1:3354	si_a328	TRINITY_DN27837_c0_g1	3343	3363	3354	-30.10	-20.70	0.687707641196013	9.5	1-9,3363-3355;12-19,3352-3345	10-11,3354-3353[SIL];20-21,3344-3343[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AUGACAGGGAUAGAAAGAGUC&GAUUUUUUUAUUCCUUGUCCC	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN27837_c0_g1_3354_TPlot.pdf
TRINITY_DN27837_c0_g1:3355	si_a327	TRINITY_DN27837_c0_g1	3344	3364	3355	-28.40	-21.50	0.757042253521127	8.5	1-10,3364-3355;13-20,3352-3345	11-12,3354-3353[SIL];21-21,3344-3344[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	UGACAGGGAUAGAAAGAGUCA&UGAUUUUUUUAUUCCUUGUCC	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN27837_c0_g1_3355_TPlot.pdf
TRINITY_DN27837_c0_g1:360	si_s82	TRINITY_DN27837_c0_g1	346	369	360	-28.90	-19.30	0.667820069204152	6	1-12,369-358;13-13,356-356;14-20,353-347	x-x,357-357[BULt];x-x,355-354[BULt];21-21,346-346[UP3]	.(((((((..(.((((((((((((&))))))))))))-)--))))))).	UAGAAGAAAUGAAAAGGAAAGGAA&UUUCUUUCCUUU-C--UUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN27837_c0_g1_360_TPlot.pdf
TRINITY_DN27837_c0_g1:361	si_s81	TRINITY_DN27837_c0_g1	347	370	361	-28.90	-19.50	0.674740484429066	5	2-13,369-358;14-14,356-356;15-21,353-347	1-1,370-370[UP5];x-x,357-357[BULt];x-x,355-354[BULt]	(((((((..(.((((((((((((.&.))))))))))))-)--)))))))	AGAAGAAAUGAAAAGGAAAGGAAU&UUUUCUUUCCUUU-C--UUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN27837_c0_g1_361_TPlot.pdf
TRINITY_DN27837_c0_g1:362	si_s80	TRINITY_DN27837_c0_g1	348	371	362	-28.20	-18.40	0.652482269503546	7	3-14,369-358;15-15,356-356;16-21,353-348	1-2,371-370[UP5];x-x,357-357[BULt];x-x,355-354[BULt]	((((((..(.((((((((((((..&..))))))))))))-)--))))))	GAAGAAAUGAAAAGGAAAGGAAUC&UUUUUCUUUCCUUU-C--UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN27837_c0_g1_362_TPlot.pdf
TRINITY_DN2783_c0_g1:2372	si_s76	TRINITY_DN2783_c0_g1	2359	2382	2372	-23.60	-15.40	0.652542372881356	7	1-9,2382-2374;10-14,2372-2368;15-21,2365-2359	x-x,2373-2373[BULt];x-x,2367-2366[BULt]	(((((((..(((((.(((((((((&)))))))))-)))))--)))))))	AAGAAAGAUGAGAGCAAAGAAAGU&AUUUUUUUU-CUUUC--CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2783_c0_g1_2372_TPlot.pdf
TRINITY_DN2784_c0_g1:5594	si_a833	TRINITY_DN2784_c0_g1	5583	5602	5594	-25.60	-17.30	0.67578125	6.5	2-8,5601-5595;11-20,5593-5584	1-1,5602-5602[UP5];9-10,5594-5594[AILq];21-21,5583-5583[UP3]	.((((((((((.-(((((((.&.)))))))..)))))))))).	UCGACUUCUAUG-UUUUUCUG&AAGAAAAAAAAUAGAAGUUGC	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN2784_c0_g1_5594_TPlot.pdf
TRINITY_DN2784_c0_g2:1582	si_a410	TRINITY_DN2784_c0_g2	1571	1591	1582	-17.80	-11.90	0.668539325842697	13	3-16,1589-1576	1-2,1591-1590[UP5];17-21,1575-1571[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAAACUUAAGUGUGGACGAUA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2784_c0_g2_1582_TPlot.pdf
TRINITY_DN27851_c0_g1:184	si_s81	TRINITY_DN27851_c0_g1	172	193	184	-28.90	-22.40	0.775086505190311	9.5	1-12,193-182;14-20,179-173	13-13,181-180[AILt];21-21,172-172[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	UGAAGAGGCUGGGGAAGGAGGA&UUUUCUUUCCUU-UCUUCUUCU	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN27851_c0_g1_184_TPlot.pdf
TRINITY_DN27851_c0_g1:185	si_s80	TRINITY_DN27851_c0_g1	173	194	185	-28.20	-22.70	0.804964539007092	7	1-13,194-182;15-21,179-173	14-14,181-180[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	GAAGAGGCUGGGGAAGGAGGAA&UUUUUCUUUCCUU-UCUUCUUC	2	0.988531686919518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN27851_c0_g1_185_TPlot.pdf
TRINITY_DN27851_c0_g1:186	si_s79	TRINITY_DN27851_c0_g1	174	195	186	-26.20	-19.80	0.755725190839695	7.5	2-14,194-182;16-21,179-174	1-1,195-195[UP5];15-15,181-180[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	AAGAGGCUGGGGAAGGAGGAAC&UUUUUUCUUUCCUU-UCUUCUU	3	0.999999999972944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN27851_c0_g1_186_TPlot.pdf
TRINITY_DN27851_c0_g1:187	si_s89	TRINITY_DN27851_c0_g1	175	197	187	-35.30	-24.60	0.696883852691218	7.5	1-2,197-196;3-15,194-182;16-20,180-176	x-x,195-195[BULt];x-x,181-181[BULt];21-21,175-175[UP3]	.(((((.(((((((((((((.((&))-)))))))))))))-))))).	AGAGGCUGGGGAAGGAGGAACGG&CC-UUUCUUCUUCUUC-GCUUCG	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN27851_c0_g1_187_TPlot.pdf
TRINITY_DN27851_c0_g1:188	si_s88	TRINITY_DN27851_c0_g1	176	198	188	-34.80	-24.20	0.695402298850575	7.5	2-3,197-196;4-16,194-182;17-21,180-176	1-1,198-198[UP5];x-x,195-195[BULt];x-x,181-181[BULt]	(((((.(((((((((((((.((.&.))-)))))))))))))-)))))	GAGGCUGGGGAAGGAGGAACGGC&UCC-UUUCUUCUUCUUC-GCUUC	4	0.99999999585186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN27851_c0_g1_188_TPlot.pdf
TRINITY_DN27851_c0_g1:40	si_a187	TRINITY_DN27851_c0_g1	29	49	40	-32.00	-21.60	0.675	13.5	6-7,44-43;9-21,41-29	1-5,49-45[UP5];8-8,42-42[SIL]	(((((((((((((.((.....&.....)).)))))))))))))	AGUGGGCGGGGAGCGACUCCG&UAAUAUCUUUCCCUGUUCACU	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN27851_c0_g1_40_TPlot.pdf
TRINITY_DN27851_c0_g1:96	si_a758	TRINITY_DN27851_c0_g1	85	105	96	-34.00	-22.40	0.658823529411765	8	1-12,105-94;14-20,92-86	13-13,93-93[SIL];21-21,85-85[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GGAUCGAAUAUCUGGAGGGGG&CCUCCUUUGGGUUUUUGAUUG	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN27851_c0_g1_96_TPlot.pdf
TRINITY_DN27851_c0_g1:98	si_a756	TRINITY_DN27851_c0_g1	87	107	98	-33.10	-21.60	0.652567975830816	9	3-14,105-94;16-21,92-87	1-2,107-106[UP5];15-15,93-93[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AUCGAAUAUCUGGAGGGGGCU&AACCUCCUUUGGGUUUUUGAU	3	0.999999999857706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN27851_c0_g1_98_TPlot.pdf
TRINITY_DN27859_c0_g2:2969	si_s67	TRINITY_DN27859_c0_g2	2957	2978	2969	-25.60	-17.00	0.6640625	6.5	1-8,2978-2971;10-14,2969-2965;15-19,2963-2959	9-9,2970-2970[SIL];x-x,2964-2964[BULt];20-21,2958-2957[UP3]	..(((((.(((((.((((((((&)))))))).)))))-)))))..	GUGAAAACAGGAUCGAAGUUGC&GCAACUUCUAUUUU-UUUUCUU	3	0.999999999998344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN27859_c0_g2_2969_TPlot.pdf
TRINITY_DN27859_c0_g2:517	si_a329	TRINITY_DN27859_c0_g2	505	526	517	-29.60	-22.90	0.773648648648649	8	3-17,524-510;18-20,508-506	1-2,526-525[UP5];x-x,509-509[BULt];21-21,505-505[UP3]	.(((.(((((((((((((((..&..)))))))))))))))-))).	GGGGUACAAGGGAUAAGAAGUG&AUUUUUUUAUUCCUUGU-CCCG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN27859_c0_g2_517_TPlot.pdf
TRINITY_DN2785_c0_g1:4969	si_s422	TRINITY_DN2785_c0_g1	4958	4978	4969	-21.30	-17.20	0.807511737089202	8	1-4,4978-4975;6-19,4973-4960	5-5,4974-4974[SIL];20-21,4959-4958[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	CUUUAUUGUUGUGUAGUGUGU&AUAUUCUAUAUAACAAUAAUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2785_c0_g1_4969_TPlot.pdf
TRINITY_DN2786_c0_g1:1784	si_a94	TRINITY_DN2786_c0_g1	1773	1794	1784	-28.60	-19.70	0.688811188811189	5.5	2-7,1793-1788;8-20,1786-1774	1-1,1794-1794[UP5];x-x,1787-1787[BULt];21-21,1773-1773[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CUAUUUUCGUUACUGUUUUCUG&AAGAAAA-GGUAACGAAGAUAA	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN2786_c0_g1_1784_TPlot.pdf
TRINITY_DN2786_c0_g1:1785	si_a93	TRINITY_DN2786_c0_g1	1774	1795	1785	-28.90	-19.40	0.671280276816609	6.5	3-8,1793-1788;9-21,1786-1774	1-2,1795-1794[UP5];x-x,1787-1787[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UAUUUUCGUUACUGUUUUCUGU&UAAGAAAA-GGUAACGAAGAUA	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a93_TRINITY_DN2786_c0_g1_1785_TPlot.pdf
TRINITY_DN2786_c0_g1:469	si_s816	TRINITY_DN2786_c0_g1	459	478	469	-24.90	-16.30	0.654618473895582	7.5	1-13,478-466;17-20,463-460	14-16,465-464[AILq];21-21,459-459[UP3]	.((((..-(((((((((((((&)))))))))))))...)))).	AUUCAAU-UUGGGAAGAGGUG&UACCUUUUCUUAAUAAUGAAA	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN2786_c0_g1_469_TPlot.pdf
TRINITY_DN2786_c0_g1:491	si_a596	TRINITY_DN2786_c0_g1	479	500	491	-32.30	-22.20	0.687306501547988	8.5	1-14,500-487;15-16,485-484	x-x,486-486[BULt];17-21,483-479[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	CUUUAGCAGGAGGUUCUGUCCU&AGGACAGAAUUUUC-GCAAUUC	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN2786_c0_g1_491_TPlot.pdf
TRINITY_DN2786_c0_g1:492	si_a595	TRINITY_DN2786_c0_g1	480	501	492	-30.30	-23.40	0.772277227722772	7.5	1-15,501-487;16-17,485-484	x-x,486-486[BULt];18-21,483-480[UP3]	....((.(((((((((((((((&)))))))))))))))-))....	UUUAGCAGGAGGUUCUGUCCUU&AAGGACAGAAUUUUC-GCAAUU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN2786_c0_g1_492_TPlot.pdf
TRINITY_DN2786_c0_g1:493	si_a594	TRINITY_DN2786_c0_g1	481	502	493	-32.30	-23.80	0.736842105263158	7	2-16,501-487;17-18,485-484	1-1,502-502[UP5];x-x,486-486[BULt];19-21,483-481[UP3]	...((.(((((((((((((((.&.)))))))))))))))-))...	UUAGCAGGAGGUUCUGUCCUUG&GAAGGACAGAAUUUUC-GCAAU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN2786_c0_g1_493_TPlot.pdf
TRINITY_DN2786_c0_g1:495	si_a592	TRINITY_DN2786_c0_g1	483	504	495	-32.80	-23.80	0.725609756097561	8.5	4-18,501-487;19-20,485-484	1-3,504-502[UP5];x-x,486-486[BULt];21-21,483-483[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	AGCAGGAGGUUCUGUCCUUGGA&AAGAAGGACAGAAUUUUC-GCA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN2786_c0_g1_495_TPlot.pdf
TRINITY_DN2786_c0_g1:496	si_a591	TRINITY_DN2786_c0_g1	484	505	496	-33.80	-23.30	0.689349112426036	9.5	5-19,501-487;20-21,485-484	1-4,505-502[UP5];x-x,486-486[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	GCAGGAGGUUCUGUCCUUGGAA&CAAGAAGGACAGAAUUUUC-GC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN2786_c0_g1_496_TPlot.pdf
TRINITY_DN2786_c0_g1:499	si_a588	TRINITY_DN2786_c0_g1	488	508	499	-29.00	-19.00	0.655172413793103	14.5	8-21,501-488	1-7,508-502[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGUUCUGUCCUUGGAAUAG&UAACAAGAAGGACAGAAUUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN2786_c0_g1_499_TPlot.pdf
TRINITY_DN27893_c0_g1:1094	si_a459	TRINITY_DN27893_c0_g1	1083	1103	1094	-23.20	-16.40	0.706896551724138	7	1-18,1103-1086	19-21,1085-1083[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUUCAUGUUAUAUAUGAUGAU&GUUGUUAUAUAUAAUAUGUAA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN27893_c0_g1_1094_TPlot.pdf
TRINITY_DN27893_c0_g1:2303	si_s556	TRINITY_DN27893_c0_g1	2292	2312	2303	-28.50	-20.20	0.708771929824561	9.5	6-21,2307-2292	1-5,2312-2308[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUCCUGAAAAUAUUAACAGUG&UAGAAUUAAUAUUUUCGGGAC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN27893_c0_g1_2303_TPlot.pdf
TRINITY_DN27893_c0_g1:3298	si_a786	TRINITY_DN27893_c0_g1	3287	3309	3298	-26.60	-17.38	0.653383458646617	10.5	1-5,3309-3305;8-17,3300-3291;19-21,3289-3287	6-7,3304-3301[AILt];18-18,3290-3290[SIL]	(((.((((((((((....(((((&)))))--..)))))))))).)))	GGACAAUGGAGAAAGUUUGAAGA&UCUUC--UAUUUUUCUAUUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN27893_c0_g1_3298_TPlot.pdf
TRINITY_DN27893_c0_g1:3317	si_s76	TRINITY_DN27893_c0_g1	3306	3326	3317	-23.60	-16.90	0.716101694915254	5	2-14,3325-3313;16-21,3311-3306	1-1,3326-3326[UP5];15-15,3312-3312[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAGGAGAAAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN27893_c0_g1_3317_TPlot.pdf
TRINITY_DN27893_c0_g1:3318	si_s75	TRINITY_DN27893_c0_g1	3307	3327	3318	-24.00	-16.00	0.666666666666667	7	3-15,3325-3313;17-21,3311-3307	1-2,3327-3326[UP5];16-16,3312-3312[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAGGAGAAAGAAGAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN27893_c0_g1_3318_TPlot.pdf
TRINITY_DN27898_c0_g1:117	si_s808	TRINITY_DN27898_c0_g1	105	126	117	-28.60	-21.40	0.748251748251748	8	1-10,126-117;11-18,115-108	x-x,116-116[BULt];19-21,107-105[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	GGCGGAAGAGGUUGAUGAAGAU&AUCUUCGUUA-CCUUUUCUUAA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN27898_c0_g1_117_TPlot.pdf
TRINITY_DN2789_c0_g1:699	si_a817	TRINITY_DN2789_c0_g1	687	708	699	-30.90	-20.80	0.673139158576052	5.5	1-12,708-697;13-16,695-692;19-20,689-688	x-x,696-696[BULt];17-18,691-690[SIL];21-21,687-687[UP3]	.((..((((.((((((((((((&))))))))))))-))))..)).	CUCGGUCUUCUUCUUCUUCUUC&GAAGAAGAAGAA-AGGAAAGAA	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN2789_c0_g1_699_TPlot.pdf
TRINITY_DN278_c0_g1:1527	si_a393	TRINITY_DN278_c0_g1	1516	1536	1527	-22.70	-14.80	0.651982378854626	14	7-20,1530-1517	1-6,1536-1531[UP5];21-21,1516-1516[UP3]	.((((((((((((((......&......)))))))))))))).	UGAACAGUUCUGUAUCAACUA&UUAAGAAUAUAGAAUUGUUUU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN278_c0_g1_1527_TPlot.pdf
TRINITY_DN278_c0_g1:2905	si_s894	TRINITY_DN278_c0_g1	2894	2914	2905	-29.10	-19.70	0.676975945017182	9	3-4,2912-2911;6-8,2909-2907;10-21,2905-2894	1-2,2914-2913[UP5];5-5,2910-2910[SIL];9-9,2906-2906[SIL]	((((((((((((.(((.((..&..)).))).))))))))))))	GAAUUGGAGAGGCAGCGUAAA&AAUAGGCUUUCUCUUCAAUUU	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN278_c0_g1_2905_TPlot.pdf
TRINITY_DN278_c0_g1:2952	si_s87	TRINITY_DN278_c0_g1	2941	2964	2952	-32.90	-22.40	0.680851063829787	8	1-5,2964-2960;6-17,2956-2945;19-20,2943-2942	x-x,2959-2957[BULt];18-18,2944-2944[SIL];21-21,2941-2941[UP3]	.((.((((((((((((...(((((&)))))---)))))))))))).)).	UAGAGAAGAAGAAGAAAAUAGGAA&UUCCU---UUCUUCUUCUUCGCUU	2	0.999999999898699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN278_c0_g1_2952_TPlot.pdf
TRINITY_DN278_c0_g1:2953	si_s86	TRINITY_DN278_c0_g1	2942	2965	2953	-32.90	-22.80	0.693009118541034	7.5	1-6,2965-2960;7-18,2956-2945;20-21,2943-2942	x-x,2959-2957[BULt];19-19,2944-2944[SIL]	((.((((((((((((...((((((&))))))---)))))))))))).))	AGAGAAGAAGAAGAAAAUAGGAAG&UUUCCU---UUCUUCUUCUUCGCU	2	0.999999958660166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN278_c0_g1_2953_TPlot.pdf
TRINITY_DN278_c0_g1:2954	si_s85	TRINITY_DN278_c0_g1	2943	2966	2954	-33.80	-22.10	0.653846153846154	10	2-7,2965-2960;8-19,2956-2945	1-1,2966-2966[UP5];x-x,2959-2957[BULt];20-21,2944-2943[UP3]	..((((((((((((...((((((.&.))))))---))))))))))))..	GAGAAGAAGAAGAAAAUAGGAAGC&CUUUCCU---UUCUUCUUCUUCGC	2	0.999999999998895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN278_c0_g1_2954_TPlot.pdf
TRINITY_DN278_c0_g1:2955	si_s84	TRINITY_DN278_c0_g1	2944	2967	2955	-32.30	-22.10	0.68421052631579	11	3-8,2965-2960;9-20,2956-2945	1-2,2967-2966[UP5];x-x,2959-2957[BULt];21-21,2944-2944[UP3]	.((((((((((((...((((((..&..))))))---)))))))))))).	AGAAGAAGAAGAAAAUAGGAAGCU&UCUUUCCU---UUCUUCUUCUUCG	2	0.999999998112635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN278_c0_g1_2955_TPlot.pdf
TRINITY_DN278_c0_g1:2956	si_s83	TRINITY_DN278_c0_g1	2945	2968	2956	-30.90	-21.70	0.702265372168285	12	4-9,2965-2960;10-21,2956-2945	1-3,2968-2966[UP5];x-x,2959-2957[BULt]	((((((((((((...((((((...&...))))))---))))))))))))	GAAGAAGAAGAAAAUAGGAAGCUC&UUCUUUCCU---UUCUUCUUCUUC	2	0.999999997808611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN278_c0_g1_2956_TPlot.pdf
TRINITY_DN278_c0_g1:2984	si_a793	TRINITY_DN278_c0_g1	2972	2993	2984	-28.50	-19.90	0.698245614035088	7	1-8,2993-2986;10-15,2984-2979;17-20,2976-2973	9-9,2985-2985[SIL];16-16,2978-2977[AILt];21-21,2972-2972[UP3]	.((((..((((((.((((((((&)))))))).))))))-.)))).	GCGGAGAUGGAAGCUAGAAGAA&UUUUUCUAUUUUCCA-AUCCGA	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN278_c0_g1_2984_TPlot.pdf
TRINITY_DN278_c0_g1:2985	si_a792	TRINITY_DN278_c0_g1	2973	2994	2985	-27.60	-19.70	0.713768115942029	7	2-9,2993-2986;11-16,2984-2979;18-21,2976-2973	1-1,2994-2994[UP5];10-10,2985-2985[SIL];17-17,2978-2977[AILt]	((((..((((((.((((((((.&.)))))))).))))))-.))))	CGGAGAUGGAAGCUAGAAGAAA&AUUUUUCUAUUUUCCA-AUCCG	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN278_c0_g1_2985_TPlot.pdf
TRINITY_DN278_c0_g1:2997	si_s78	TRINITY_DN278_c0_g1	2987	3006	2997	-26.20	-19.70	0.751908396946565	5	1-12,3006-2995;14-21,2994-2987	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	AGAAGAAA-GAAAGAGGAGGA&UUUUUUUCUUUCCUUUCUUCU	4	0.99999999997982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN278_c0_g1_2997_TPlot.pdf
TRINITY_DN278_c0_g1:3005	si_s76	TRINITY_DN278_c0_g1	2993	3014	3005	-23.60	-19.70	0.834745762711864	6.5	2-14,3013-3001;15-21,2999-2993	1-1,3014-3014[UP5];x-x,3000-3000[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AAGAAAGAGGAGGAAGAGAGAA&AUUUUUUUUCUUUC-CUUUCUU	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN278_c0_g1_3005_TPlot.pdf
TRINITY_DN278_c0_g1:3018	si_s70	TRINITY_DN278_c0_g1	3007	3027	3018	-25.80	-17.20	0.666666666666667	9	2-6,3026-3022;9-20,3019-3008	1-1,3027-3027[UP5];7-8,3021-3020[SIL];21-21,3007-3007[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	AGAGAGAAGGAAACAGGAAGA&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN278_c0_g1_3018_TPlot.pdf
TRINITY_DN278_c0_g1:3667	si_s319	TRINITY_DN278_c0_g1	3656	3677	3667	-31.30	-20.60	0.65814696485623	8	2-7,3676-3671;8-15,3669-3662;17-20,3660-3657	1-1,3677-3677[UP5];x-x,3670-3670[BULt];16-16,3661-3661[SIL];21-21,3656-3656[UP3]	.((((.((((((((.((((((.&.))))))-)))))))).)))).	UUGUUAGUAGCAGGAAAGGAUG&UGUCCUU-CUUGUUACAAACAU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN278_c0_g1_3667_TPlot.pdf
TRINITY_DN278_c0_g1:578	si_s312	TRINITY_DN278_c0_g1	567	587	578	-29.00	-19.20	0.662068965517241	10	4-11,584-577;13-20,575-568	1-3,587-585[UP5];12-12,576-576[SIL];21-21,567-567[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	GAGCAGGAAAGACGGAAUCCA&AAAAUUCUGUCCUUCUUGUUA	3	0.99999999999813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN278_c0_g1_578_TPlot.pdf
TRINITY_DN278_c0_g1:718	si_a397	TRINITY_DN278_c0_g1	706	727	718	-24.00	-16.10	0.670833333333333	4.5	1-4,727-724;6-15,722-713;16-21,711-706	5-5,723-723[SIL];x-x,712-712[BULt]	((((((.((((((((((.((((&)))).))))))))))-))))))	AAACAAUAAUAGUUCUAGAUUC&GAAUAUAGAAUUGUU-UUGUUU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN278_c0_g1_718_TPlot.pdf
TRINITY_DN278_c0_g1:826	si_a503	TRINITY_DN278_c0_g1	815	835	826	-32.10	-22.60	0.70404984423676	5.5	1-13,835-823;15-15,821-821;17-20,819-816	14-14,822-822[SIL];16-16,820-820[SIL];21-21,815-815[UP3]	.((((.(.(((((((((((((&))))))))))))).).)))).	UGUUCGACGGAAGGCGAAGAA&UUUUUCGUCUUCCUUGGAAUG	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN278_c0_g1_826_TPlot.pdf
TRINITY_DN278_c0_g1:832	si_s77	TRINITY_DN278_c0_g1	820	841	832	-25.50	-17.00	0.666666666666667	7.5	2-12,840-830;13-18,828-823;20-21,821-820	1-1,841-841[UP5];x-x,829-829[BULt];19-19,822-822[SIL]	((.((((((.(((((((((((.&.)))))))))))-)))))).))	GACGGAAGGCGAAGAAAGGAAC&UUUUUUUUCUUU-CCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN278_c0_g1_832_TPlot.pdf
TRINITY_DN278_c0_g1:833	si_s76	TRINITY_DN278_c0_g1	821	842	833	-23.60	-16.10	0.682203389830509	9	3-13,840-830;14-19,828-823	1-2,842-841[UP5];x-x,829-829[BULt];20-21,822-821[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	ACGGAAGGCGAAGAAAGGAACU&AUUUUUUUUCUUU-CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN278_c0_g1_833_TPlot.pdf
TRINITY_DN278_c0_g1:835	si_s83	TRINITY_DN278_c0_g1	824	844	835	-30.90	-21.30	0.689320388349515	8.5	5-15,840-830;17-21,828-824	1-4,844-841[UP5];16-16,829-829[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GAAGGCGAAGAAAGGAACUAC&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN278_c0_g1_835_TPlot.pdf
TRINITY_DN278_c0_g1:875	si_s196	TRINITY_DN278_c0_g1	866	884	875	-29.30	-20.20	0.689419795221843	11	4-11,881-874;14-21,873-866	1-3,884-882[UP5];12-13,x-x[BULq]	((((((((--((((((((...&...))))))))..))))))))	GCUGGUGC--UCCAGAGUCAU&AUUAUUUUGGAAUGUACCAGU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN278_c0_g1_875_TPlot.pdf
TRINITY_DN27901_c0_g1:64	si_s76	TRINITY_DN27901_c0_g1	53	73	64	-23.60	-15.70	0.665254237288135	10	3-17,71-57	1-2,73-72[UP5];18-21,56-53[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUAUAGGGGGAGAAGAAAAGA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN27901_c0_g1_64_TPlot.pdf
TRINITY_DN27913_c0_g1:145	si_a412	TRINITY_DN27913_c0_g1	134	154	145	-18.30	-12.50	0.683060109289617	9.5	2-6,153-149;9-20,146-135	1-1,154-154[UP5];7-8,148-147[SIL];21-21,134-134[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	AGUUUAUUUGGAUUGGAACAG&UUGUUUAUAUUUAAAUAAAUA	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN27913_c0_g1_145_TPlot.pdf
TRINITY_DN2791_c0_g1:577	si_a627	TRINITY_DN2791_c0_g1	566	587	577	-29.50	-21.10	0.715254237288136	13.5	1-8,587-580;10-17,577-570	9-9,579-578[AILt];18-21,569-566[UP3]	....((((((((..((((((((&))))))))-.))))))))....	UGCCAGUCGGCGGAGGUGCGCC&GGCGUAUU-AUGUCGAUUUUUU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN2791_c0_g1_577_TPlot.pdf
TRINITY_DN2791_c0_g1:578	si_a626	TRINITY_DN2791_c0_g1	567	588	578	-30.20	-22.50	0.745033112582781	12	1-9,588-580;11-18,577-570	10-10,579-578[AILt];19-21,569-567[UP3]	...((((((((..(((((((((&)))))))))-.))))))))...	GCCAGUCGGCGGAGGUGCGCCU&AGGCGUAUU-AUGUCGAUUUUU	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN2791_c0_g1_578_TPlot.pdf
TRINITY_DN2791_c0_g1:580	si_a625	TRINITY_DN2791_c0_g1	568	589	580	-30.60	-23.30	0.761437908496732	11.5	1-10,589-580;12-19,577-570	11-11,579-578[AILt];20-21,569-568[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	CCAGUCGGCGGAGGUGCGCCUG&UAGGCGUAUU-AUGUCGAUUUU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN2791_c0_g1_580_TPlot.pdf
TRINITY_DN2791_c0_g1:581	si_a624	TRINITY_DN2791_c0_g1	569	590	581	-32.30	-23.40	0.724458204334365	11.5	2-11,589-580;13-20,577-570	1-1,590-590[UP5];12-12,579-578[AILt];21-21,569-569[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	CAGUCGGCGGAGGUGCGCCUGC&CUAGGCGUAUU-AUGUCGAUUU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN2791_c0_g1_581_TPlot.pdf
TRINITY_DN2791_c0_g1:582	si_a623	TRINITY_DN2791_c0_g1	570	591	582	-33.10	-23.40	0.706948640483384	11.5	3-12,589-580;14-21,577-570	1-2,591-590[UP5];13-13,579-578[AILt]	((((((((..((((((((((..&..))))))))))-.))))))))	AGUCGGCGGAGGUGCGCCUGCU&ACUAGGCGUAUU-AUGUCGAUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN2791_c0_g1_582_TPlot.pdf
TRINITY_DN2791_c0_g1:645	si_s69	TRINITY_DN2791_c0_g1	633	654	645	-23.40	-16.70	0.713675213675214	8.5	3-12,652-643;14-21,640-633	1-2,654-653[UP5];13-13,642-641[AILt]	((((((((..((((((((((..&..))))))))))-.))))))))	GAAAGAAGCCAAGGUAGAAGAA&AACUUCUAUUUU-UUUUCUUUC	3	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2791_c0_g1_645_TPlot.pdf
TRINITY_DN2791_c0_g1:683	si_s797	TRINITY_DN2791_c0_g1	672	693	683	-30.00	-19.50	0.65	10.5	1-9,693-685;10-17,683-676	x-x,684-684[BULt];18-21,675-672[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AUCAGAGGAUGAUGAUAUGGGC&GCUCGUAUU-UUAUCUUCGUUA	3	0.999999999608459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2791_c0_g1_683_TPlot.pdf
TRINITY_DN2791_c0_g1:685	si_s796	TRINITY_DN2791_c0_g1	673	694	685	-30.30	-20.60	0.67986798679868	9.5	1-10,694-685;11-18,683-676	x-x,684-684[BULt];19-21,675-673[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UCAGAGGAUGAUGAUAUGGGCU&AGCUCGUAUU-UUAUCUUCGUU	3	0.999875134613737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2791_c0_g1_685_TPlot.pdf
TRINITY_DN2791_c0_g1:686	si_s795	TRINITY_DN2791_c0_g1	674	695	686	-30.30	-21.50	0.70957095709571	8	1-11,695-685;12-19,683-676	x-x,684-684[BULt];20-21,675-674[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	CAGAGGAUGAUGAUAUGGGCUU&AAGCUCGUAUU-UUAUCUUCGU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN2791_c0_g1_686_TPlot.pdf
TRINITY_DN2791_c0_g1:687	si_s794	TRINITY_DN2791_c0_g1	675	696	687	-31.20	-21.60	0.692307692307692	8	2-12,695-685;13-20,683-676	1-1,696-696[UP5];x-x,684-684[BULt];21-21,675-675[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	AGAGGAUGAUGAUAUGGGCUUU&CAAGCUCGUAUU-UUAUCUUCG	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN2791_c0_g1_687_TPlot.pdf
TRINITY_DN2791_c0_g1:688	si_s793	TRINITY_DN2791_c0_g1	676	697	688	-30.50	-21.20	0.695081967213115	7.5	3-13,695-685;14-21,683-676	1-2,697-696[UP5];x-x,684-684[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GAGGAUGAUGAUAUGGGCUUUG&ACAAGCUCGUAUU-UUAUCUUC	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN2791_c0_g1_688_TPlot.pdf
TRINITY_DN27945_c0_g1:1457	si_a26	TRINITY_DN27945_c0_g1	1440	1466	1457	-28.00	-18.30	0.653571428571429	16.5	1-11,1466-1456;12-17,1450-1445;18-20,1443-1441	x-x,1455-1451[BULt];x-x,1444-1444[BULt];21-21,1440-1440[UP3]	.(((.((((((.....(((((((((((&)))))))))))-----))))))-))).	AGGUACUUGGAAUGGUGCUGAGAAUGA&UUAUUUUUAGU-----UCUAAG-ACCG	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN27945_c0_g1_1457_TPlot.pdf
TRINITY_DN27945_c0_g1:1758	si_s806	TRINITY_DN27945_c0_g1	1747	1767	1758	-28.60	-18.90	0.660839160839161	14.5	8-21,1760-1747	1-7,1767-1761[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAAGGGUAGCGUGUGACG&UUAUCUUCGUUACCUUUUCUU	4	0.999999999999124	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN27945_c0_g1_1758_TPlot.pdf
TRINITY_DN27945_c0_g1:484	si_s71	TRINITY_DN27945_c0_g1	472	496	484	-25.70	-17.30	0.673151750972763	12	1-6,496-491;7-19,487-475;20-21,473-472	x-x,490-488[BULt];x-x,474-474[BULt]	((.(((((((((((((...((((((&))))))---)))))))))))))-))	GGUGAAAGAGAAAGAGCGCUGGGAG&CUUCUA---UUUUUUUUCUUUC-CU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN27945_c0_g1_484_TPlot.pdf
TRINITY_DN27945_c0_g1:543	si_s480	TRINITY_DN27945_c0_g1	532	551	543	-25.00	-16.30	0.652	8.5	1-5,551-547;7-17,546-536	6-6,x-x[BULq];18-21,535-532[UP3]	....(((((((((((-(((((&))))).)))))))))))....	UUUGAAGUAGAUGUA-GAUCC&GGAUCCUAUAUUUAUUUAAAU	4	0.999903674439181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN27945_c0_g1_543_TPlot.pdf
TRINITY_DN27945_c0_g1:545	si_s478	TRINITY_DN27945_c0_g1	534	553	545	-27.20	-18.40	0.676470588235294	7	2-7,552-547;9-19,546-536	1-1,553-553[UP5];8-8,x-x[BULq];20-21,535-534[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	UGAAGUAGAUGUA-GAUCCGA&ACGGAUCCUAUAUUUAUUUAA	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN27945_c0_g1_545_TPlot.pdf
TRINITY_DN27945_c0_g1:845	si_s524	TRINITY_DN27945_c0_g1	835	854	845	-23.90	-15.80	0.661087866108787	8	1-7,854-848;9-11,846-844;13-20,843-836	8-8,847-847[SIL];12-12,x-x[BULq];21-21,835-835[UP3]	.((((((((-(((.(((((((&))))))).))).)))))))).	GCAGAGAUG-UUUGGAGUUGA&UUAAUUCGAAAUCAUUUUUGA	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN27945_c0_g1_845_TPlot.pdf
TRINITY_DN27945_c0_g1:846	si_s523	TRINITY_DN27945_c0_g1	836	855	846	-24.50	-18.10	0.738775510204082	6	1-8,855-848;10-12,846-844;14-21,843-836	9-9,847-847[SIL];13-13,x-x[BULq]	((((((((-(((.((((((((&)))))))).))).))))))))	CAGAGAUG-UUUGGAGUUGAG&CUUAAUUCGAAAUCAUUUUUG	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN27945_c0_g1_846_TPlot.pdf
TRINITY_DN27945_c0_g1:856	si_a847	TRINITY_DN27945_c0_g1	846	865	856	-31.20	-22.40	0.717948717948718	7	2-15,864-851;18-21,849-846	1-1,865-865[UP5];16-17,850-850[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	UGGAG-UUGAGUUGGCGGCUG&AAGUUGCUAACUUGAAAUCCA	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN27945_c0_g1_856_TPlot.pdf
TRINITY_DN2794_c0_g2:4110	si_a635	TRINITY_DN2794_c0_g2	4100	4119	4110	-26.10	-18.40	0.704980842911877	5.5	2-15,4118-4105;17-21,4104-4100	1-1,4119-4119[UP5];16-16,x-x[BULq]	(((((-((((((((((((((.&.)))))))))))))).)))))	AUUAC-CGAAAAAGUUGGCAA&AUGUCGAUUUUUUUGAGUAAU	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2794_c0_g2_4110_TPlot.pdf
TRINITY_DN2794_c1_g1:29	si_s9	TRINITY_DN2794_c1_g1	19	38	29	-22.90	-15.40	0.672489082969432	5	1-12,38-27;15-21,25-19	13-14,26-26[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	CAGUGUAA-AAUGAUAAGUGA&UUACUUAUUAUUACUAUAUUG	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN2794_c1_g1_29_TPlot.pdf
TRINITY_DN2795_c0_g1:1317	si_a407	TRINITY_DN2795_c0_g1	1306	1326	1317	-19.80	-14.20	0.717171717171717	8	3-11,1324-1316;13-21,1314-1306	1-2,1326-1325[UP5];12-12,1315-1315[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUUUAAAUACAGACGAAGCCG&UUGUUUUGUUUAUAUUUAAAU	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2795_c0_g1_1317_TPlot.pdf
TRINITY_DN2795_c0_g1:1362	si_s50	TRINITY_DN2795_c0_g1	1351	1371	1362	-29.00	-20.00	0.689655172413793	9.5	1-6,1371-1366;9-19,1363-1353	7-8,1365-1364[SIL];20-21,1352-1351[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	CCGCUGACUUGAGUACCGGUU&AAUUGGAUUUCAAGUUAGCAA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN2795_c0_g1_1362_TPlot.pdf
TRINITY_DN2795_c0_g1:1693	si_a664	TRINITY_DN2795_c0_g1	1682	1702	1693	-29.60	-19.60	0.662162162162162	6	1-6,1702-1697;7-8,1695-1694;10-19,1693-1684	x-x,1696-1696[BULt];9-9,x-x[BULq];20-21,1683-1682[UP3]	..((((((((((-((.((((((&))))))-)).))))))))))..	UAAAGGAAUCAA-AGCGCAUUU&AAAUGC-CUAUUGAUUCCUUAU	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN2795_c0_g1_1693_TPlot.pdf
TRINITY_DN2795_c0_g1:1694	si_a663	TRINITY_DN2795_c0_g1	1683	1703	1694	-31.40	-21.20	0.67515923566879	5.5	1-7,1703-1697;8-9,1695-1694;11-20,1693-1684	x-x,1696-1696[BULt];10-10,x-x[BULq];21-21,1683-1683[UP3]	.((((((((((-((.(((((((&)))))))-)).)))))))))).	AAAGGAAUCAA-AGCGCAUUUU&GAAAUGC-CUAUUGAUUCCUUA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN2795_c0_g1_1694_TPlot.pdf
TRINITY_DN2795_c0_g1:1834	si_s93	TRINITY_DN2795_c0_g1	1823	1843	1834	-34.80	-25.50	0.732758620689655	6.5	3-16,1841-1828;18-19,1826-1825	1-2,1843-1842[UP5];17-17,1827-1827[SIL];20-21,1824-1823[UP3]	..((.((((((((((((((..&..)))))))))))))).))..	GUUCGGAGGCGAAGAAGAAAA&UCUUCUUCUUCGCUUCGGAUU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2795_c0_g1_1834_TPlot.pdf
TRINITY_DN2795_c0_g1:1835	si_s92	TRINITY_DN2795_c0_g1	1824	1844	1835	-34.90	-25.50	0.730659025787966	7.5	4-17,1841-1828;19-20,1826-1825	1-3,1844-1842[UP5];18-18,1827-1827[SIL];21-21,1824-1824[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	UUCGGAGGCGAAGAAGAAAAA&UUCUUCUUCUUCGCUUCGGAU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2795_c0_g1_1835_TPlot.pdf
TRINITY_DN2795_c0_g1:1837	si_s90	TRINITY_DN2795_c0_g1	1826	1846	1837	-35.30	-23.30	0.660056657223796	10.5	6-19,1841-1828;21-21,1826-1826	1-5,1846-1842[UP5];20-20,1827-1827[SIL]	(.((((((((((((((.....&.....)))))))))))))).)	CGGAGGCGAAGAAGAAAAACC&CUUUCUUCUUCUUCGCUUCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2795_c0_g1_1837_TPlot.pdf
TRINITY_DN2795_c0_g1:2323	si_a760	TRINITY_DN2795_c0_g1	2311	2332	2323	-31.10	-20.50	0.659163987138264	8	1-5,2332-2328;7-15,2326-2318;17-19,2315-2313	6-6,2327-2327[SIL];16-16,2317-2316[AILt];20-21,2312-2311[UP3]	..(((..(((((((((.(((((&))))).)))))))))-.)))..	CCCAAGCCGGAAACCCCGAGGA&UCCUUUGGGUUUUUG-AUUGAU	3	0.999999994099649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN2795_c0_g1_2323_TPlot.pdf
TRINITY_DN2795_c0_g1:2630	si_a762	TRINITY_DN2795_c0_g1	2619	2640	2630	-29.70	-19.40	0.653198653198653	8.5	1-6,2640-2635;7-17,2633-2623	x-x,2634-2634[BULt];18-21,2622-2619[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	AAACUAAUCAAAGACACCGAAG&CUUUGG-GUUUUUGAUUGAUUC	2	0.99999904829412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2795_c0_g1_2630_TPlot.pdf
TRINITY_DN2795_c0_g1:2631	si_a761	TRINITY_DN2795_c0_g1	2620	2641	2631	-30.10	-19.80	0.6578073089701	8.5	2-7,2640-2635;8-18,2633-2623	1-1,2641-2641[UP5];x-x,2634-2634[BULt];19-21,2622-2620[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	AACUAAUCAAAGACACCGAAGA&CCUUUGG-GUUUUUGAUUGAUU	2	0.999998809311826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN2795_c0_g1_2631_TPlot.pdf
TRINITY_DN2795_c0_g1:2716	si_a320	TRINITY_DN2795_c0_g1	2705	2725	2716	-24.40	-17.20	0.704918032786885	5	1-12,2725-2714;15-17,2711-2709;20-21,2706-2705	13-14,2713-2712[SIL];18-19,2708-2707[SIL]	((..(((..((((((((((((&))))))))))))..)))..))	GAUCAAAUCGAUCAUGGAUAA&UUAUCCAUGAUUUUUUUAUUC	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN2795_c0_g1_2716_TPlot.pdf
TRINITY_DN2795_c0_g1:2717	si_a319	TRINITY_DN2795_c0_g1	2706	2726	2717	-22.40	-15.90	0.709821428571429	6.5	2-13,2725-2714;16-18,2711-2709	1-1,2726-2726[UP5];14-15,2713-2712[SIL];19-21,2708-2706[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	AUCAAAUCGAUCAUGGAUAAG&UUUAUCCAUGAUUUUUUUAUU	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2795_c0_g1_2717_TPlot.pdf
TRINITY_DN2795_c0_g1:2718	si_a318	TRINITY_DN2795_c0_g1	2707	2727	2718	-22.50	-15.90	0.706666666666667	7.5	3-14,2725-2714;17-19,2711-2709	1-2,2727-2726[UP5];15-16,2713-2712[SIL];20-21,2708-2707[UP3]	..(((..((((((((((((..&..))))))))))))..)))..	UCAAAUCGAUCAUGGAUAAGA&AUUUAUCCAUGAUUUUUUUAU	4	0.999999411941571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2795_c0_g1_2718_TPlot.pdf
TRINITY_DN2795_c0_g1:2769	si_a401	TRINITY_DN2795_c0_g1	2758	2778	2769	-22.60	-15.40	0.68141592920354	10.5	1-4,2778-2775;7-18,2772-2761	5-6,2774-2773[SIL];19-21,2760-2758[UP3]	...((((((((((((..((((&))))..))))))))))))...	UGCUGAACAAAGCGAAGCUGU&AUAGAAUUGUUUUGUUUAUAU	2	0.999944277087014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2795_c0_g1_2769_TPlot.pdf
TRINITY_DN2795_c0_g1:2770	si_a400	TRINITY_DN2795_c0_g1	2759	2779	2770	-22.80	-16.20	0.710526315789474	10	1-5,2779-2775;8-19,2772-2761	6-7,2774-2773[SIL];20-21,2760-2759[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	GCUGAACAAAGCGAAGCUGUG&UAUAGAAUUGUUUUGUUUAUA	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2795_c0_g1_2770_TPlot.pdf
TRINITY_DN2795_c0_g1:2805	si_a756	TRINITY_DN2795_c0_g1	2793	2816	2805	-33.10	-23.40	0.706948640483384	9.5	3-9,2814-2808;10-18,2805-2797;19-21,2795-2793	1-2,2816-2815[UP5];x-x,2807-2806[BULt];x-x,2796-2796[BULt]	(((.(((((((((..(((((((..&..)))))))--)))))))))-)))	GUCGAAAAACCCGUCAAGGAGGAG&AACCUCCUU--UGGGUUUUU-GAU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN2795_c0_g1_2805_TPlot.pdf
TRINITY_DN2796_c0_g1:1045	si_s86	TRINITY_DN2796_c0_g1	1024	1054	1045	-32.90	-22.10	0.671732522796353	24.5	1-12,1054-1043;13-20,1032-1025	x-x,1042-1033[BULt];21-21,1024-1024[UP3]	.((((((((..........((((((((((((&))))))))))))----------)))))))).	UGUGAGGGAGGUGUUUGUCGAAGAGAGGAGA&UUUCCUUUCUUC----------UUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2796_c0_g1_1045_TPlot.pdf
TRINITY_DN2796_c0_g1:1046	si_s76	TRINITY_DN2796_c0_g1	1027	1055	1046	-23.60	-15.50	0.656779661016949	15	2-13,1054-1043;14-21,1034-1027	1-1,1055-1055[UP5];x-x,1042-1035[BULt]	((((((((........((((((((((((.&.))))))))))))--------))))))))	GAGGGAGGUGUUUGUCGAAGAGAGGAGAA&AUUUUUUUUCUUU--------CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2796_c0_g1_1046_TPlot.pdf
TRINITY_DN2796_c0_g1:1052	si_s79	TRINITY_DN2796_c0_g1	1041	1059	1052	-26.20	-18.60	0.709923664122137	7.5	1-7,1059-1053;10-19,1052-1043	8-9,x-x[BULq];20-21,1042-1041[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	UCGAAGAGAGGA--GAAAGAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2796_c0_g1_1052_TPlot.pdf
TRINITY_DN2796_c0_g1:281	si_a521	TRINITY_DN2796_c0_g1	268	290	281	-42.50	-28.58	0.672470588235294	8	2-5,289-286;7-15,284-276;18-21,271-268	1-1,290-290[UP5];6-6,285-285[SIL];16-17,275-272[AILt]	((((....(((((((((.((((.&.)))).)))))))))--..))))	GCUCACUGGUGUCCGCCAUGCAG&AUGUAAGGCGGACAC--GCGAGC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a521_TRINITY_DN2796_c0_g1_281_TPlot.pdf
TRINITY_DN2796_c0_g1:481	si_a665	TRINITY_DN2796_c0_g1	470	489	481	-29.60	-20.90	0.706081081081081	8	2-7,488-483;9-20,482-471	1-1,489-489[UP5];8-8,x-x[BULq];21-21,470-470[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	UGUGGGGGAUCAG-AGGUAUC&AAUGCCUAUUGAUUCCUUAUU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN2796_c0_g1_481_TPlot.pdf
TRINITY_DN2796_c0_g1:620	si_s774	TRINITY_DN2796_c0_g1	609	629	620	-24.70	-16.70	0.676113360323887	10	1-14,629-616	15-21,615-609[UP3]	.......((((((((((((((&)))))))))))))).......	GUCAACGAGCGAUGGUAGUUA&UAAUUACUAUUGCUAUAAAAC	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN2796_c0_g1_620_TPlot.pdf
TRINITY_DN2796_c0_g1:622	si_s772	TRINITY_DN2796_c0_g1	611	631	622	-23.20	-16.90	0.728448275862069	10.5	3-16,629-616	1-2,631-630[UP5];17-21,615-611[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAACGAGCGAUGGUAGUUAUG&AUUAAUUACUAUUGCUAUAAA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN2796_c0_g1_622_TPlot.pdf
TRINITY_DN2796_c0_g1:623	si_s771	TRINITY_DN2796_c0_g1	612	633	623	-25.20	-18.60	0.738095238095238	9.5	1-3,633-631;4-17,629-616	x-x,630-630[BULt];18-21,615-612[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	AACGAGCGAUGGUAGUUAUGUC&GAU-UAAUUACUAUUGCUAUAA	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN2796_c0_g1_623_TPlot.pdf
TRINITY_DN2796_c0_g1:624	si_s770	TRINITY_DN2796_c0_g1	613	634	624	-26.60	-20.70	0.778195488721804	8.5	1-4,634-631;5-18,629-616	x-x,630-630[BULt];19-21,615-613[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	ACGAGCGAUGGUAGUUAUGUCG&CGAU-UAAUUACUAUUGCUAUA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN2796_c0_g1_624_TPlot.pdf
TRINITY_DN2796_c0_g1:625	si_s769	TRINITY_DN2796_c0_g1	614	635	625	-27.00	-20.70	0.766666666666667	8	2-5,634-631;6-19,629-616	1-1,635-635[UP5];x-x,630-630[BULt];20-21,615-614[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	CGAGCGAUGGUAGUUAUGUCGA&ACGAU-UAAUUACUAUUGCUAU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN2796_c0_g1_625_TPlot.pdf
TRINITY_DN2796_c0_g1:626	si_s768	TRINITY_DN2796_c0_g1	615	636	626	-26.80	-20.70	0.772388059701492	9	3-6,634-631;7-20,629-616	1-2,636-635[UP5];x-x,630-630[BULt];21-21,615-615[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	GAGCGAUGGUAGUUAUGUCGAG&AACGAU-UAAUUACUAUUGCUA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN2796_c0_g1_626_TPlot.pdf
TRINITY_DN2796_c0_g1:627	si_s767	TRINITY_DN2796_c0_g1	616	637	627	-28.10	-20.30	0.722419928825623	10	4-7,634-631;8-21,629-616	1-3,637-635[UP5];x-x,630-630[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	AGCGAUGGUAGUUAUGUCGAGA&CAACGAU-UAAUUACUAUUGCU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN2796_c0_g1_627_TPlot.pdf
TRINITY_DN2796_c0_g1:938	si_a754	TRINITY_DN2796_c0_g1	921	947	938	-34.60	-22.50	0.65028901734104	16.5	1-11,947-937;12-20,930-922	x-x,936-931[BULt];21-21,921-921[UP3]	.(((((((((......(((((((((((&)))))))))))------))))))))).	AGAAGACUCAAGACUCGAGGAGGUUUA&UGAACCUCCUU------UGGGUUUUUG	2	0.999407020573315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN2796_c0_g1_938_TPlot.pdf
TRINITY_DN2796_c0_g1:939	si_a753	TRINITY_DN2796_c0_g1	922	948	939	-33.10	-23.50	0.709969788519637	15.5	1-12,948-937;13-21,930-922	x-x,936-931[BULt]	(((((((((......((((((((((((&))))))))))))------)))))))))	GAAGACUCAAGACUCGAGGAGGUUUAU&AUGAACCUCCUU------UGGGUUUUU	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN2796_c0_g1_939_TPlot.pdf
TRINITY_DN2796_c0_g1:940	si_a752	TRINITY_DN2796_c0_g1	930	949	940	-34.80	-23.30	0.669540229885058	4.5	2-13,948-937;15-21,936-930	1-1,949-949[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	AAGACUC-GAGGAGGUUUAUC&CAUGAACCUCCUUUGGGUUUU	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN2796_c0_g1_940_TPlot.pdf
TRINITY_DN27979_c0_g1:228	si_s711	TRINITY_DN27979_c0_g1	216	237	228	-32.10	-21.60	0.672897196261682	5.5	1-12,237-226;13-20,224-217	x-x,225-225[BULt];21-21,216-216[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	UUAUUUUUCACCUGUUUAUUAA&UUAGUGAACAGG-GAAAGAUAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s711_TRINITY_DN27979_c0_g1_228_TPlot.pdf
TRINITY_DN27979_c0_g1:229	si_s710	TRINITY_DN27979_c0_g1	217	238	229	-32.00	-21.50	0.671875	4.5	2-13,237-226;14-21,224-217	1-1,238-238[UP5];x-x,225-225[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	UAUUUUUCACCUGUUUAUUAAA&AUUAGUGAACAGG-GAAAGAUA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s710_TRINITY_DN27979_c0_g1_229_TPlot.pdf
TRINITY_DN27979_c0_g1:366	si_a777	TRINITY_DN27979_c0_g1	356	375	366	-27.00	-17.60	0.651851851851852	6	1-1,375-375;3-14,373-362;16-20,361-357	2-2,374-374[SIL];15-15,x-x[BULq];21-21,356-356[UP3]	.(((((-((((((((((((.(&).)))))))))))).))))).	UGGAAU-GAAGGGUUGAAUGA&UGAUUCAACUCUUCUAUUUUU	3	0.999998031553349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN27979_c0_g1_366_TPlot.pdf
TRINITY_DN27979_c0_g1:367	si_a776	TRINITY_DN27979_c0_g1	357	376	367	-27.10	-18.50	0.682656826568266	5	1-2,376-375;4-15,373-362;17-21,361-357	3-3,374-374[SIL];16-16,x-x[BULq]	(((((-((((((((((((.((&)).)))))))))))).)))))	GGAAU-GAAGGGUUGAAUGAA&UUGAUUCAACUCUUCUAUUUU	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN27979_c0_g1_367_TPlot.pdf
TRINITY_DN27979_c0_g1:368	si_a775	TRINITY_DN27979_c0_g1	358	377	368	-27.20	-18.20	0.669117647058823	5.5	2-3,376-375;5-16,373-362;18-21,361-358	1-1,377-377[UP5];4-4,374-374[SIL];17-17,x-x[BULq]	((((-((((((((((((.((.&.)).)))))))))))).))))	GAAU-GAAGGGUUGAAUGAAA&AUUGAUUCAACUCUUCUAUUU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN27979_c0_g1_368_TPlot.pdf
TRINITY_DN2797_c0_g1:1045	si_s631	TRINITY_DN2797_c0_g1	1033	1054	1045	-36.00	-23.60	0.655555555555556	6.5	1-13,1054-1042;14-16,1040-1038;19-20,1035-1034	x-x,1041-1041[BULt];17-18,1037-1036[SIL];21-21,1033-1033[UP3]	.((..(((.(((((((((((((&)))))))))))))-)))..)).	AGCUCAUGCCCUGCGAGAAGAU&AUCUUUUCGUAGG-CGUUUGCC	4	0.99999486274582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN2797_c0_g1_1045_TPlot.pdf
TRINITY_DN2797_c0_g1:166	si_a494	TRINITY_DN2797_c0_g1	155	175	166	-29.50	-22.10	0.749152542372881	7.5	1-15,175-161;17-18,159-158	16-16,160-160[SIL];19-21,157-155[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UCUGAGGGAGAACGACGUGUU&AAUAUGUCGUUUUUCGUCUUC	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2797_c0_g1_166_TPlot.pdf
TRINITY_DN2797_c0_g1:167	si_a493	TRINITY_DN2797_c0_g1	156	176	167	-29.50	-22.50	0.76271186440678	7	2-16,175-161;18-19,159-158	1-1,176-176[UP5];17-17,160-160[SIL];20-21,157-156[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	CUGAGGGAGAACGACGUGUUG&GAAUAUGUCGUUUUUCGUCUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN2797_c0_g1_167_TPlot.pdf
TRINITY_DN2797_c0_g1:168	si_a492	TRINITY_DN2797_c0_g1	157	177	168	-30.20	-22.50	0.745033112582781	8	3-17,175-161;19-20,159-158	1-2,177-176[UP5];18-18,160-160[SIL];21-21,157-157[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	UGAGGGAGAACGACGUGUUGA&AGAAUAUGUCGUUUUUCGUCU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN2797_c0_g1_168_TPlot.pdf
TRINITY_DN2797_c0_g1:169	si_a491	TRINITY_DN2797_c0_g1	158	178	169	-29.90	-22.10	0.739130434782609	9	4-18,175-161;20-21,159-158	1-3,178-176[UP5];19-19,160-160[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAGGGAGAACGACGUGUUGAU&UAGAAUAUGUCGUUUUUCGUC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN2797_c0_g1_169_TPlot.pdf
TRINITY_DN2797_c0_g1:170	si_a490	TRINITY_DN2797_c0_g1	159	179	170	-28.10	-19.10	0.679715302491103	11	5-19,175-161;21-21,159-159	1-4,179-176[UP5];20-20,160-160[SIL]	(.(((((((((((((((....&....))))))))))))))).)	AGGGAGAACGACGUGUUGAUC&AUAGAAUAUGUCGUUUUUCGU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN2797_c0_g1_170_TPlot.pdf
TRINITY_DN2797_c0_g1:171	si_a489	TRINITY_DN2797_c0_g1	160	180	171	-27.70	-19.10	0.689530685920578	13	6-20,175-161	1-5,180-176[UP5];21-21,160-160[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGGAGAACGACGUGUUGAUCC&UAUAGAAUAUGUCGUUUUUCG	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN2797_c0_g1_171_TPlot.pdf
TRINITY_DN2797_c0_g1:172	si_a488	TRINITY_DN2797_c0_g1	161	181	172	-26.40	-18.50	0.700757575757576	14	7-21,175-161	1-6,181-176[UP5]	(((((((((((((((......&......)))))))))))))))	GGAGAACGACGUGUUGAUCCA&AUAUAGAAUAUGUCGUUUUUC	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN2797_c0_g1_172_TPlot.pdf
TRINITY_DN2797_c0_g1:332	si_s376	TRINITY_DN2797_c0_g1	321	341	332	-42.50	-28.10	0.661176470588235	9	3-12,339-330;15-18,327-324	1-2,341-340[UP5];13-14,329-328[SIL];19-21,323-321[UP3]	...((((..((((((((((..&..))))))))))..))))...	GUCGGCGACCACGCGGGCGUU&AUCGCUCGCGUGUCCGCCUUA	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN2797_c0_g1_332_TPlot.pdf
TRINITY_DN2797_c0_g1:334	si_s374	TRINITY_DN2797_c0_g1	323	342	334	-45.60	-29.90	0.655701754385965	7	1-3,342-340;5-14,339-330;17-20,327-324	4-4,x-x[BULq];15-16,329-328[SIL];21-21,323-323[UP3]	.((((..((((((((((-(((&))).))))))))))..)))).	CGGCGACCACGCGGGCG-UUG&CGAUCGCUCGCGUGUCCGCCU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN2797_c0_g1_334_TPlot.pdf
TRINITY_DN2797_c0_g1:335	si_s373	TRINITY_DN2797_c0_g1	324	343	335	-47.30	-32.00	0.676532769556025	6	1-4,343-340;6-15,339-330;18-21,327-324	5-5,x-x[BULq];16-17,329-328[SIL]	((((..((((((((((-((((&)))).))))))))))..))))	GGCGACCACGCGGGCG-UUGG&CCGAUCGCUCGCGUGUCCGCC	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN2797_c0_g1_335_TPlot.pdf
TRINITY_DN2797_c0_g1:456	si_a20	TRINITY_DN2797_c0_g1	445	464	456	-26.70	-18.30	0.685393258426966	10	1-4,464-461;6-11,460-455;13-20,453-446	5-5,x-x[BULq];12-12,454-454[SIL];21-21,445-445[UP3]	.((((((((.((((((-((((&)))).)))))).)))))))).	GAGAGCUGACGAUGGG-AGGC&GCCUAUUUAUUUUUAGUUCUA	2	0.996613268617216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2797_c0_g1_456_TPlot.pdf
TRINITY_DN2797_c0_g1:457	si_a19	TRINITY_DN2797_c0_g1	446	465	457	-27.00	-19.30	0.714814814814815	8	1-5,465-461;7-12,460-455;14-21,453-446	6-6,x-x[BULq];13-13,454-454[SIL]	((((((((.((((((-(((((&))))).)))))).))))))))	AGAGCUGACGAUGGG-AGGCU&AGCCUAUUUAUUUUUAGUUCU	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN2797_c0_g1_457_TPlot.pdf
TRINITY_DN2797_c0_g1:458	si_a18	TRINITY_DN2797_c0_g1	447	466	458	-26.30	-18.20	0.692015209125475	8.5	2-6,465-461;8-13,460-455;15-21,453-447	1-1,466-466[UP5];7-7,x-x[BULq];14-14,454-454[SIL]	(((((((.((((((-(((((.&.))))).)))))).)))))))	GAGCUGACGAUGGG-AGGCUA&AAGCCUAUUUAUUUUUAGUUC	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN2797_c0_g1_458_TPlot.pdf
TRINITY_DN27981_c0_g1:141	si_s87	TRINITY_DN27981_c0_g1	130	150	141	-32.90	-23.20	0.70516717325228	8	1-7,150-144;9-20,142-131	8-8,143-143[SIL];21-21,130-130[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	UAGCGAAGGGGGACAAGGGGG&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999391695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN27981_c0_g1_141_TPlot.pdf
TRINITY_DN2799_c0_g1:1879	si_a512	TRINITY_DN2799_c0_g1	1868	1888	1879	-37.80	-24.60	0.650793650793651	7.5	1-6,1888-1883;9-16,1880-1873;18-21,1871-1868	7-8,1882-1881[SIL];17-17,1872-1872[SIL]	((((.((((((((..((((((&))))))..)))))))).))))	UCCGGCUUGCGUUGAAAGGGA&UUCCUUGGAAUGUAAGGCGGA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN2799_c0_g1_1879_TPlot.pdf
TRINITY_DN2799_c0_g1:2518	si_s899	TRINITY_DN2799_c0_g1	2506	2527	2518	-28.30	-18.60	0.657243816254417	11	1-11,2527-2517;14-17,2513-2510	12-13,2516-2514[AILt];18-21,2509-2506[UP3]	....((((...(((((((((((&)))))))))))-..))))....	GACAGAAACUGGAAGAGGAGGC&GCUUUCUCUUC-AAUUUCAAUU	3	0.999999999954202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2799_c0_g1_2518_TPlot.pdf
TRINITY_DN2799_c0_g1:3648	si_a728	TRINITY_DN2799_c0_g1	3636	3656	3648	-40.30	-26.20	0.650124069478908	11	3-9,3654-3648;11-13,3647-3645;15-20,3642-3637	1-2,3656-3655[UP5];10-10,x-x[BULq];14-14,3644-3643[AILt];21-21,3636-3636[UP3]	.((((((..(((-(((((((..&..))))))).)))-.)))))).	UGGGGUGCUGGG-GCCCGGGAG&UACUCGGGCAUCU-UUACCCCU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN2799_c0_g1_3648_TPlot.pdf
TRINITY_DN2799_c0_g1:4246	si_a498	TRINITY_DN2799_c0_g1	4235	4259	4246	-33.50	-23.00	0.686567164179104	15.5	2-7,4258-4253;8-18,4248-4238	1-1,4259-4259[UP5];x-x,4252-4249[BULt];19-21,4237-4235[UP3]	...(((((((((((....((((((.&.))))))----)))))))))))...	GCCGGAAGGCGGAACGCAGGCGACG&UGUCGUU----UUUCGUCUUCCUUG	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2799_c0_g1_4246_TPlot.pdf
TRINITY_DN2799_c0_g1:4247	si_a497	TRINITY_DN2799_c0_g1	4236	4260	4247	-32.00	-23.00	0.71875	16.5	3-8,4258-4253;9-19,4248-4238	1-2,4260-4259[UP5];x-x,4252-4249[BULt];20-21,4237-4236[UP3]	..(((((((((((....((((((..&..))))))----)))))))))))..	CCGGAAGGCGGAACGCAGGCGACGA&AUGUCGUU----UUUCGUCUUCCUU	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2799_c0_g1_4247_TPlot.pdf
TRINITY_DN2799_c0_g1:4248	si_a496	TRINITY_DN2799_c0_g1	4237	4261	4248	-32.40	-23.00	0.709876543209877	17.5	4-9,4258-4253;10-20,4248-4238	1-3,4261-4259[UP5];x-x,4252-4249[BULt];21-21,4237-4237[UP3]	.(((((((((((....((((((...&...))))))----))))))))))).	CGGAAGGCGGAACGCAGGCGACGAG&UAUGUCGUU----UUUCGUCUUCCU	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN2799_c0_g1_4248_TPlot.pdf
TRINITY_DN2799_c0_g1:4249	si_s376	TRINITY_DN2799_c0_g1	4239	4258	4249	-42.50	-28.50	0.670588235294118	7	2-6,4257-4253;8-11,4251-4248;13-20,4247-4240	1-1,4258-4258[UP5];7-7,4252-4252[SIL];12-12,x-x[BULq];21-21,4239-4239[UP3]	.((((((((-((((.(((((.&.))))).)))).)))))))).	GAAGGCGGA-ACGCAGGCGAC&AUCGCUCGCGUGUCCGCCUUA	2	0.996116359839343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN2799_c0_g1_4249_TPlot.pdf
TRINITY_DN2799_c0_g1:4253	si_a495	TRINITY_DN2799_c0_g1	4238	4262	4253	-31.90	-22.70	0.711598746081505	18	5-10,4258-4253;11-21,4248-4238	1-4,4262-4259[UP5];x-x,4252-4249[BULt]	(((((((((((....((((((....&....))))))----)))))))))))	GGAAGGCGGAACGCAGGCGACGAGA&AUAUGUCGUU----UUUCGUCUUCC	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN2799_c0_g1_4253_TPlot.pdf
TRINITY_DN2799_c0_g1:4254	si_a494	TRINITY_DN2799_c0_g1	4239	4263	4254	-29.50	-19.30	0.654237288135593	20	6-11,4258-4253;12-21,4248-4239	1-5,4263-4259[UP5];x-x,4252-4249[BULt]	((((((((((....((((((.....&.....))))))----))))))))))	GAAGGCGGAACGCAGGCGACGAGAA&AAUAUGUCGUU----UUUCGUCUUC	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2799_c0_g1_4254_TPlot.pdf
TRINITY_DN2799_c0_g1:4270	si_a785	TRINITY_DN2799_c0_g1	4259	4283	4270	-25.90	-19.88	0.767567567567568	14.5	1-7,4283-4277;9-21,4271-4259	8-8,4276-4272[AILt]	(((((((((((((.....(((((((&)))))))----.)))))))))))))	GAGAAUAGAAGAGAUUGCGGAGGAG&CUCUUCU----AUUUUUCUAUUUUC	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2799_c0_g1_4270_TPlot.pdf
TRINITY_DN2799_c0_g1:4271	si_a784	TRINITY_DN2799_c0_g1	4260	4284	4271	-24.70	-16.78	0.679352226720648	15.5	2-8,4283-4277;10-21,4271-4260	1-1,4284-4284[UP5];9-9,4276-4272[AILt]	((((((((((((.....(((((((.&.)))))))----.))))))))))))	AGAAUAGAAGAGAUUGCGGAGGAGG&ACUCUUCU----AUUUUUCUAUUUU	2	0.999999996394785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2799_c0_g1_4271_TPlot.pdf
TRINITY_DN2799_c0_g1:4424	si_s46	TRINITY_DN2799_c0_g1	4412	4433	4424	-25.00	-16.50	0.66	9	3-5,4431-4429;7-10,4427-4424;11-21,4422-4412	1-2,4433-4432[UP5];6-6,4428-4428[SIL];x-x,4423-4423[BULt]	(((((((((((.((((.(((..&..))).))))-)))))))))))	UAACUUGAAGUGCCAGAUAUAU&UAAUAAUUGG-AUUUCAAGUUA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN2799_c0_g1_4424_TPlot.pdf
TRINITY_DN2799_c0_g1:4890	si_s225	TRINITY_DN2799_c0_g1	4878	4899	4890	-34.00	-22.22	0.653529411764706	12.5	4-11,4896-4889;15-20,4884-4879	1-3,4899-4897[UP5];12-14,4888-4885[AILt];21-21,4878-4878[UP3]	.((((((....((((((((...&...))))))))-...)))))).	AGUUCCUCGAGUCACGCGGAGA&AAACCGCGUGA-AUAAGGAAUC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s225_TRINITY_DN2799_c0_g1_4890_TPlot.pdf
TRINITY_DN2799_c0_g1:5312	si_s396	TRINITY_DN2799_c0_g1	5301	5321	5312	-32.90	-21.80	0.662613981762918	9	1-2,5321-5320;4-7,5318-5315;9-17,5313-5305	3-3,5319-5319[SIL];8-8,5314-5314[SIL];18-21,5304-5301[UP3]	....(((((((((.((((.((&)).)))).)))))))))....	GCAGCGUCUUCCUCGGAGCGU&ACAUUCCAAGGAAGACGAAAA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN2799_c0_g1_5312_TPlot.pdf
TRINITY_DN27_c0_g1:2289	si_a143	TRINITY_DN27_c0_g1	2277	2298	2289	-25.10	-16.50	0.657370517928287	6.5	1-11,2298-2288;12-16,2286-2282;18-20,2280-2278	x-x,2287-2287[BULt];17-17,2281-2281[SIL];21-21,2277-2277[UP3]	.(((.(((((.(((((((((((&)))))))))))-))))).))).	AUUAUGACAACCAACGGUUGAU&AUUAAUCGUUG-UUGUUUUAAG	4	0.999999960642865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN27_c0_g1_2289_TPlot.pdf
TRINITY_DN27_c0_g1:2292	si_a140	TRINITY_DN27_c0_g1	2280	2301	2292	-25.20	-16.50	0.654761904761905	8.5	3-14,2299-2288;15-19,2286-2282	1-2,2301-2300[UP5];x-x,2287-2287[BULt];20-21,2281-2280[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	AUGACAACCAACGGUUGAUUCU&GUAAUUAAUCGUUG-UUGUUUU	4	0.999999998639336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN27_c0_g1_2292_TPlot.pdf
TRINITY_DN27_c1_g1:220	si_s2	TRINITY_DN27_c1_g1	209	229	220	-20.50	-13.80	0.673170731707317	9	1-5,229-225;8-19,222-211	6-7,224-223[SIL];20-21,210-209[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	AGGGUAAUAAGUAAGUUAGGA&UUUUAUAUUACUUAUUAUUAC	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN27_c1_g1_220_TPlot.pdf
TRINITY_DN27_c1_g1:221	si_s1	TRINITY_DN27_c1_g1	210	230	221	-18.70	-14.00	0.748663101604278	9	2-6,229-225;9-20,222-211	1-1,230-230[UP5];7-8,224-223[SIL];21-21,210-210[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	GGGUAAUAAGUAAGUUAGGAU&UUUUUAUAUUACUUAUUAUUA	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN27_c1_g1_221_TPlot.pdf
TRINITY_DN2800_c0_g1:3270	si_a769	TRINITY_DN2800_c0_g1	3258	3279	3270	-26.70	-18.40	0.689138576779026	5	1-10,3279-3270;12-16,3268-3264;17-21,3262-3258	11-11,3269-3269[SIL];x-x,3263-3263[BULt]	(((((.(((((.((((((((((&)))))))))).)))))-)))))	AGGAGAUUGAAACGAUCAAAAG&UUUUUGAUUGAUUCAA-CUCUU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN2800_c0_g1_3270_TPlot.pdf
TRINITY_DN2800_c0_g1:3373	si_a75	TRINITY_DN2800_c0_g1	3362	3382	3373	-21.30	-17.70	0.830985915492958	9	1-19,3382-3364	20-21,3363-3362[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CAGGUGGUGGGGAAUAGUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2800_c0_g1_3373_TPlot.pdf
TRINITY_DN2800_c0_g1:3420	si_s79	TRINITY_DN2800_c0_g1	3409	3429	3420	-26.20	-18.90	0.721374045801527	15	8-21,3422-3409	1-7,3429-3423[UP5]	((((((((((((((.......&.......))))))))))))))	GAGAAGAGAGGAAGAUAUGGC&UUUUUUCUUUCCUUUCUUCUU	2	0.999999999996654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2800_c0_g1_3420_TPlot.pdf
TRINITY_DN28013_c0_g1:158	si_s71	TRINITY_DN28013_c0_g1	141	167	158	-25.70	-18.20	0.708171206225681	8.5	2-16,166-152;17-21,145-141	1-1,167-167[UP5];x-x,151-146[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	AGGAAAUAUUAGGAAAAAAAGUAGAAC&CUUCUAUUUUUUUUCU------UUCCU	3	0.999999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN28013_c0_g1_158_TPlot.pdf
TRINITY_DN28013_c0_g1:160	si_s69	TRINITY_DN28013_c0_g1	149	169	160	-23.40	-15.30	0.653846153846154	8.5	4-19,166-151	1-3,169-167[UP5];20-21,150-149[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAGGAAAAAAAGUAGAACCC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN28013_c0_g1_160_TPlot.pdf
TRINITY_DN28017_c0_g1:2450	si_a326	TRINITY_DN28017_c0_g1	2438	2459	2450	-26.20	-18.10	0.690839694656489	8.5	1-2,2459-2458;4-11,2456-2449;13-21,2446-2438	3-3,2457-2457[SIL];12-12,2448-2447[AILt]	(((((((((..((((((((.((&)).))))))))-.)))))))))	GACAAGGAGAAGAGAAAAUGAU&AUGAUUUUUUU-AUUCCUUGUC	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN28017_c0_g1_2450_TPlot.pdf
TRINITY_DN28017_c0_g1:2944	si_a392	TRINITY_DN28017_c0_g1	2933	2953	2944	-22.80	-15.00	0.657894736842105	12.5	5-7,2949-2947;9-20,2945-2934	1-4,2953-2950[UP5];8-8,2946-2946[SIL];21-21,2933-2933[UP3]	.((((((((((((.(((....&....))).)))))))))))).	CGGCAGUUCUGUAGUCUCAGA&AUUAAGAAUAUAGAAUUGUUU	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN28017_c0_g1_2944_TPlot.pdf
TRINITY_DN28017_c0_g1:2945	si_a391	TRINITY_DN28017_c0_g1	2934	2954	2945	-22.80	-15.00	0.657894736842105	13.5	6-8,2949-2947;10-21,2945-2934	1-5,2954-2950[UP5];9-9,2946-2946[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GGCAGUUCUGUAGUCUCAGAU&AAUUAAGAAUAUAGAAUUGUU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN28017_c0_g1_2945_TPlot.pdf
TRINITY_DN28017_c0_g1:2995	si_a388	TRINITY_DN28017_c0_g1	2984	3004	2995	-24.80	-17.10	0.689516129032258	8	3-7,3002-2998;9-19,2996-2986	1-2,3004-3003[UP5];8-8,2997-2997[SIL];20-21,2985-2984[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	AUUUCUAUAUUCUCGAUUCAU&UCGAAUUAAGAAUAUAGAAUU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a388_TRINITY_DN28017_c0_g1_2995_TPlot.pdf
TRINITY_DN28017_c0_g1:3485	si_s449	TRINITY_DN28017_c0_g1	3473	3494	3485	-23.60	-16.00	0.677966101694915	6	2-12,3493-3483;13-15,3481-3479;17-21,3477-3473	1-1,3494-3494[UP5];x-x,3482-3482[BULt];16-16,3478-3478[SIL]	(((((.(((.(((((((((((.&.)))))))))))-))).)))))	GGAUGUUUGAUUGUUAUGUAUU&UAUAUAUAACAA-CAAUUAUCU	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN28017_c0_g1_3485_TPlot.pdf
TRINITY_DN28018_c0_g1:159	si_a79	TRINITY_DN28018_c0_g1	146	168	159	-22.20	-14.90	0.671171171171171	8	2-10,167-159;11-21,156-146	1-1,168-168[UP5];x-x,158-157[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	UUUCUUAAUGGAUUGAAAAAUAC&UUGUUUUUCA--UUAUUAAGAAA	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN28018_c0_g1_159_TPlot.pdf
TRINITY_DN2801_c0_g2:122	si_a392	TRINITY_DN2801_c0_g2	111	130	122	-22.80	-15.20	0.666666666666667	10.5	5-9,126-122;11-21,121-111	1-4,130-127[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	AAGCAAUUCUG-AUUCUGAUU&AUUAAGAAUAUAGAAUUGUUU	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN2801_c0_g2_122_TPlot.pdf
TRINITY_DN28020_c0_g1:1388	si_a128	TRINITY_DN28020_c0_g1	1377	1397	1388	-23.20	-15.20	0.655172413793103	14.5	7-18,1391-1380	1-6,1397-1392[UP5];19-21,1379-1377[UP3]	...((((((((((((......&......))))))))))))...	ACAAGUUACUAUUGCAAAAAU&UUUAUAGCAAUAGUAAUUAAU	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN28020_c0_g1_1388_TPlot.pdf
TRINITY_DN2803_c0_g1:1458	si_s76	TRINITY_DN2803_c0_g1	1446	1467	1458	-23.60	-18.50	0.783898305084746	6.5	2-17,1466-1451;19-21,1448-1446	1-1,1467-1467[UP5];18-18,1450-1449[AILt]	(((..((((((((((((((((.&.))))))))))))))))-.)))	GGGUUGAGGAGAGAAAAAGAAG&AUUUUUUUUCUUUCCUU-UCUU	4	0.999999998797842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2803_c0_g1_1458_TPlot.pdf
TRINITY_DN2803_c0_g1:1834	si_a428	TRINITY_DN2803_c0_g1	1823	1844	1834	-31.80	-21.00	0.660377358490566	9	3-9,1842-1836;10-19,1834-1825	1-2,1844-1843[UP5];x-x,1835-1835[BULt];20-21,1824-1823[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	GCUCUAAUGGGUGCCUAUAUGA&AAAUAUAGG-AUCCGUUGGAUA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN2803_c0_g1_1834_TPlot.pdf
TRINITY_DN2803_c0_g1:2379	si_s768	TRINITY_DN2803_c0_g1	2368	2388	2379	-26.80	-18.00	0.671641791044776	7	1-16,2388-2373	17-21,2372-2368[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAUGUGGUAAUUAGUCGUU&AACGAUUAAUUACUAUUGCUA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN2803_c0_g1_2379_TPlot.pdf
TRINITY_DN2803_c0_g1:309	si_s94	TRINITY_DN2803_c0_g1	295	318	309	-35.50	-23.20	0.653521126760563	8.5	2-10,317-309;11-15,307-303;16-21,300-295	1-1,318-318[UP5];x-x,308-308[BULt];x-x,302-301[BULt]	((((((..(((((.(((((((((.&.)))))))))-)))))--))))))	CAAUCCAAGAGGUAGAGGAGGAAA&CUUCUUCUUC-GCUUC--GGAUUG	3	0.999999999323675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2803_c0_g1_309_TPlot.pdf
TRINITY_DN2803_c0_g1:312	si_a502	TRINITY_DN2803_c0_g1	296	321	312	-32.10	-21.10	0.657320872274143	11	1-7,321-315;9-13,313-309;14-19,303-298	8-8,314-314[SIL];x-x,308-304[BULt];20-21,297-296[UP3]	..((((((.....(((((.(((((((&))))))).)))))-----))))))..	AAUCCAAGAGGUAGAGGAGGAAAAGC&GUUUUUCGUCUUC-----CUUGGAAU	3	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2803_c0_g1_312_TPlot.pdf
TRINITY_DN2803_c0_g1:313	si_s79	TRINITY_DN2803_c0_g1	301	321	313	-26.20	-17.20	0.656488549618321	7	2-9,320-313;11-15,312-308;16-21,306-301	1-1,321-321[UP5];10-10,x-x[BULq];x-x,307-307[BULt]	((((((.(((((-((((((((.&.)))))))).)))))-))))))	AAGAGGUAGAGG-AGGAAAAGC&UUUUUUCUUUCCUUU-CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2803_c0_g1_313_TPlot.pdf
TRINITY_DN2803_c0_g1:323	si_a746	TRINITY_DN2803_c0_g1	307	333	323	-41.30	-28.92	0.700242130750605	16	1-3,333-331;4-11,329-322;13-21,315-307	x-x,330-330[BULt];12-12,321-316[AILt]	(((((((((......((((((((.(((&)))-))))))))-----.)))))))))	UAGAGGAGGAAAAGCUCGUGGCCAAGG&CCU-GGCCAUGA-----ACCUCCUUUG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN2803_c0_g1_323_TPlot.pdf
TRINITY_DN2803_c0_g1:331	si_s157	TRINITY_DN2803_c0_g1	320	340	331	-45.20	-29.50	0.652654867256637	9	2-4,339-337;6-9,335-332;11-16,330-325;18-21,323-320	1-1,340-340[UP5];5-5,336-336[SIL];10-10,331-331[SIL];17-17,324-324[SIL]	((((.((((((.((((.(((.&.))).)))).)))))).))))	GCUCGUGGCCAAGGGCGUCCA&AGGAGGUUCAUGGCCAGGGGU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN2803_c0_g1_331_TPlot.pdf
TRINITY_DN2803_c0_g1:632	si_s86	TRINITY_DN2803_c0_g1	621	642	632	-32.90	-23.30	0.708206686930091	7	1-9,642-634;10-18,632-624	x-x,633-633[BULt];19-21,623-621[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	UUAGAGGAGGAAUGAGAGGAAA&UUUCCUUUC-UUCUUCUUCGCU	2	0.999992940807132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN2803_c0_g1_632_TPlot.pdf
TRINITY_DN2803_c0_g1:634	si_s85	TRINITY_DN2803_c0_g1	622	643	634	-33.80	-23.50	0.695266272189349	7	2-10,642-634;11-19,632-624	1-1,643-643[UP5];x-x,633-633[BULt];20-21,623-622[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	UAGAGGAGGAAUGAGAGGAAAA&CUUUCCUUUC-UUCUUCUUCGC	2	0.999995017964448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2803_c0_g1_634_TPlot.pdf
TRINITY_DN2803_c0_g1:635	si_a326	TRINITY_DN2803_c0_g1	624	644	635	-26.20	-18.00	0.687022900763359	12.5	5-18,640-627;20-21,625-624	1-4,644-641[UP5];19-19,626-626[SIL]	((.((((((((((((((....&....)))))))))))))).))	GAGGAGGAAUGAGAGGAAAAG&AUGAUUUUUUUAUUCCUUGUC	3	0.999994126720142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2803_c0_g1_635_TPlot.pdf
TRINITY_DN2803_c0_g1:636	si_s83	TRINITY_DN2803_c0_g1	624	646	636	-30.90	-24.00	0.776699029126214	7	1-6,646-641;7-12,639-634;13-21,632-624	x-x,640-640[BULt];x-x,633-633[BULt]	(((((((((.((((((.((((((&))))))-))))))-)))))))))	GAGGAGGAAUGAGAGGAAAAGGA&UUCUUU-CCUUUC-UUCUUCUUC	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2803_c0_g1_636_TPlot.pdf
TRINITY_DN2803_c0_g1:637	si_s82	TRINITY_DN2803_c0_g1	625	647	637	-28.90	-21.70	0.750865051903114	6	1-7,647-641;8-13,639-634;14-21,632-625	x-x,640-640[BULt];x-x,633-633[BULt]	((((((((.((((((.(((((((&)))))))-))))))-))))))))	AGGAGGAAUGAGAGGAAAAGGAA&UUUCUUU-CCUUUC-UUCUUCUU	3	0.999999996370266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2803_c0_g1_637_TPlot.pdf
TRINITY_DN2803_c0_g1:638	si_s81	TRINITY_DN2803_c0_g1	626	648	638	-28.90	-21.30	0.737024221453287	6.5	1-8,648-641;9-14,639-634;15-21,632-626	x-x,640-640[BULt];x-x,633-633[BULt]	(((((((.((((((.((((((((&))))))))-))))))-)))))))	GGAGGAAUGAGAGGAAAAGGAAG&UUUUCUUU-CCUUUC-UUCUUCU	3	0.999999999958611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2803_c0_g1_638_TPlot.pdf
TRINITY_DN2803_c0_g1:640	si_s70	TRINITY_DN2803_c0_g1	629	649	640	-25.80	-18.40	0.713178294573643	7.5	2-6,648-644;8-16,642-634;18-21,632-629	1-1,649-649[UP5];7-7,643-643[SIL];17-17,633-633[SIL]	((((.(((((((((.(((((.&.))))).))))))))).))))	GGAAUGAGAGGAAAAGGAAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.999999996296038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2803_c0_g1_640_TPlot.pdf
TRINITY_DN2804_c0_g1:1871	si_s18	TRINITY_DN2804_c0_g1	1860	1880	1871	-27.50	-19.30	0.701818181818182	6.5	2-9,1879-1872;11-12,1870-1869;14-21,1867-1860	1-1,1880-1880[UP5];10-10,1871-1871[SIL];13-13,1868-1868[SIL]	((((((((.((.((((((((.&.)))))))).)).))))))))	AGUUGCGAGCAUUGUGGUAAA&AUUACUAUAUUGAUUGCAACU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN2804_c0_g1_1871_TPlot.pdf
TRINITY_DN2804_c0_g1:447	si_a141	TRINITY_DN2804_c0_g1	436	459	447	-23.80	-15.60	0.65546218487395	11.5	1-9,459-451;10-18,447-439	x-x,450-448[BULt];19-21,438-436[UP3]	...(((((((((...(((((((((&)))))))))---)))))))))...	UGCAACAACAACAUGGAUUGGUUG&UAAUUAAUC---GUUGUUGUUUUA	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2804_c0_g1_447_TPlot.pdf
TRINITY_DN2805_c0_g1:3377	si_s216	TRINITY_DN2805_c0_g1	3366	3386	3377	-35.80	-24.90	0.695530726256983	11.5	1-7,3386-3380;9-10,3378-3377;13-20,3374-3367	8-8,3379-3379[SIL];11-12,3376-3375[SIL];21-21,3366-3366[UP3]	.((((((((..((.(((((((&))))))).))..)))))))).	AUCACGCGGGGUCUGGCGCGG&UUGUGUUCGAAACCGCGUGAA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN2805_c0_g1_3377_TPlot.pdf
TRINITY_DN2805_c0_g1:4660	si_s85	TRINITY_DN2805_c0_g1	4649	4670	4660	-33.80	-23.00	0.680473372781065	8	1-5,4670-4666;6-18,4664-4652	x-x,4665-4665[BULt];19-21,4651-4649[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	ACAGAGAGGAAGAGAGAGAGAG&CUUUC-CUUUCUUCUUCUUCGC	2	0.999999956005823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2805_c0_g1_4660_TPlot.pdf
TRINITY_DN2805_c0_g1:4661	si_s84	TRINITY_DN2805_c0_g1	4650	4671	4661	-32.30	-23.00	0.712074303405573	8	2-6,4670-4666;7-19,4664-4652	1-1,4671-4671[UP5];x-x,4665-4665[BULt];20-21,4651-4650[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	CAGAGAGGAAGAGAGAGAGAGU&UCUUUC-CUUUCUUCUUCUUCG	2	0.999990717359949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2805_c0_g1_4661_TPlot.pdf
TRINITY_DN2805_c0_g1:4662	si_s76	TRINITY_DN2805_c0_g1	4650	4671	4662	-23.60	-20.80	0.88135593220339	7.5	1-13,4671-4659;14-20,4657-4651	x-x,4658-4658[BULt];21-21,4650-4650[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	CAGAGAGGAAGAGAGAGAGAGU&AUUUUUUUUCUUU-CCUUUCUU	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2805_c0_g1_4662_TPlot.pdf
TRINITY_DN2805_c0_g1:4663	si_s75	TRINITY_DN2805_c0_g1	4651	4672	4663	-24.00	-21.30	0.8875	6.5	1-14,4672-4659;15-21,4657-4651	x-x,4658-4658[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	AGAGAGGAAGAGAGAGAGAGUG&UAUUUUUUUUCUUU-CCUUUCU	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2805_c0_g1_4663_TPlot.pdf
TRINITY_DN2805_c0_g1:4664	si_s74	TRINITY_DN2805_c0_g1	4652	4673	4664	-25.00	-20.80	0.832	8	2-15,4672-4659;16-21,4657-4652	1-1,4673-4673[UP5];x-x,4658-4658[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	GAGAGGAAGAGAGAGAGAGUGA&CUAUUUUUUUUCUUU-CCUUUC	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2805_c0_g1_4664_TPlot.pdf
TRINITY_DN2805_c0_g1:4665	si_s73	TRINITY_DN2805_c0_g1	4653	4674	4665	-24.00	-17.60	0.733333333333333	10	3-16,4672-4659;17-21,4657-4653	1-2,4674-4673[UP5];x-x,4658-4658[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AGAGGAAGAGAGAGAGAGUGAC&UCUAUUUUUUUUCUUU-CCUUU	3	0.999999999986946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2805_c0_g1_4665_TPlot.pdf
TRINITY_DN2805_c0_g1:4667	si_a496	TRINITY_DN2805_c0_g1	4655	4677	4667	-32.40	-21.20	0.654320987654321	7.5	1-7,4677-4671;8-13,4669-4664;15-21,4661-4655	x-x,4670-4670[BULt];14-14,4663-4662[AILt]	(((((((..((((((.(((((((&)))))))-))))))-.)))))))	AGGAAGAGAGAGAGAGUGACAUG&UAUGUCG-UUUUUC-GUCUUCCU	2	0.999999995654792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN2805_c0_g1_4667_TPlot.pdf
TRINITY_DN2805_c0_g1:4709	si_a227	TRINITY_DN2805_c0_g1	4699	4718	4709	-26.80	-17.72	0.661194029850746	9	1-11,4718-4708;16-18,4704-4702	12-15,4707-4705[AILq];19-21,4701-4699[UP3]	...(((...-(((((((((((&)))))))))))....)))...	ACAUGAGAG-AGAGACAUGAG&CUCAUGUUUCUAUAAUCAAUU	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN2805_c0_g1_4709_TPlot.pdf
TRINITY_DN2806_c0_g2:1971	si_s15	TRINITY_DN2806_c0_g2	1962	1980	1971	-25.60	-17.40	0.6796875	7	2-15,1979-1966;18-21,1965-1962	1-1,1980-1980[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	UGCG--CGAUGUAGUGAUGAG&AUUAUUACUAUAUUGAUUGCA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN2806_c0_g2_1971_TPlot.pdf
TRINITY_DN2806_c0_g2:4465	si_s507	TRINITY_DN2806_c0_g2	4454	4475	4465	-22.70	-16.10	0.709251101321586	9	4-9,4472-4467;10-20,4465-4455	1-3,4475-4473[UP5];x-x,4466-4466[BULt];21-21,4454-4454[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	AUAAGGGUAUAGCAAUUGUGAA&AAAACAAUU-CUAUAUUCUUAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN2806_c0_g2_4465_TPlot.pdf
TRINITY_DN2806_c0_g3:2764	si_s493	TRINITY_DN2806_c0_g3	2753	2775	2764	-19.80	-13.50	0.681818181818182	8	3-7,2773-2769;8-20,2766-2754	1-2,2775-2774[UP5];x-x,2768-2767[BULt];21-21,2753-2753[UP3]	.(((((((((((((..(((((..&..)))))--))))))))))))).	AUGUUUUGUUUAUAAUUUUAAUU&AUUUAAA--UAUAAACAAAACAA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN2806_c0_g3_2764_TPlot.pdf
TRINITY_DN2806_c0_g3:2766	si_s491	TRINITY_DN2806_c0_g3	2755	2777	2766	-19.50	-12.70	0.651282051282051	6	1-3,2777-2775;5-9,2773-2769;10-21,2766-2755	4-4,2774-2774[SIL];x-x,2768-2767[BULt]	((((((((((((..(((((.(((&))).)))))--))))))))))))	GUUUUGUUUAUAAUUUUAAUUAA&UUAUUUAAA--UAUAAACAAAAC	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN2806_c0_g3_2766_TPlot.pdf
TRINITY_DN2808_c0_g1:11300	si_s90	TRINITY_DN2808_c0_g1	11285	11309	11300	-35.30	-24.40	0.691218130311615	9.5	2-12,11308-11298;13-18,11294-11289;19-21,11287-11285	1-1,11309-11309[UP5];x-x,11297-11295[BULt];x-x,11288-11288[BULt]	(((.((((((...(((((((((((.&.)))))))))))---))))))-)))	CCGUGAGCGACAAAGAGGAAGAAAC&CUUUCUUCUUCU---UCGCUU-CGG	3	0.999999958800647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2808_c0_g1_11300_TPlot.pdf
TRINITY_DN2808_c0_g1:11303	si_s87	TRINITY_DN2808_c0_g1	11289	11312	11303	-32.90	-22.50	0.683890577507599	6.5	1-3,11312-11310;5-15,11308-11298;16-21,11294-11289	4-4,11309-11309[SIL];x-x,11297-11295[BULt]	((((((...(((((((((((.(((&))).)))))))))))---))))))	GAGCGACAAAGAGGAAGAAACGAA&UUCCUUUCUUCUUCU---UCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN2808_c0_g1_11303_TPlot.pdf
TRINITY_DN2808_c0_g1:1675	si_a288	TRINITY_DN2808_c0_g1	1664	1684	1675	-28.20	-18.40	0.652482269503546	11	1-13,1684-1672	14-21,1671-1664[UP3]	........(((((((((((((&)))))))))))))........	GCGCUAGCAAGUCCGGGCGAU&AUCGCUUGGAUUUAAAAAAGA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN2808_c0_g1_1675_TPlot.pdf
TRINITY_DN2808_c0_g1:215	si_a337	TRINITY_DN2808_c0_g1	203	224	215	-30.80	-20.40	0.662337662337662	11	1-10,224-215;11-14,213-210	x-x,214-214[BULt];15-21,209-203[UP3]	.......((((.((((((((((&))))))))))-)))).......	GGUCAAGUCGGCGACGAGGGAU&AUUCCUUGUC-CCGAAAAUAUU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN2808_c0_g1_215_TPlot.pdf
TRINITY_DN2808_c0_g1:219	si_a333	TRINITY_DN2808_c0_g1	207	228	219	-30.60	-20.40	0.666666666666667	13	5-14,224-215;15-18,213-210	1-4,228-225[UP5];x-x,214-214[BULt];19-21,209-207[UP3]	...((((.((((((((((....&....))))))))))-))))...	AAGUCGGCGACGAGGGAUUUGC&UUUUAUUCCUUGUC-CCGAAAA	3	0.999840799792015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN2808_c0_g1_219_TPlot.pdf
TRINITY_DN2808_c0_g1:2563	si_s99	TRINITY_DN2808_c0_g1	2552	2572	2563	-34.60	-22.98	0.664161849710983	7.5	1-12,2572-2561;16-18,2557-2555	13-15,2560-2558[SIL];19-21,2554-2552[UP3]	...(((...((((((((((((&))))))))))))...)))...	UGGUCUCUGCCGGAGCGAAGA&UCUUCGCUUCGGAUUGGAAAA	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN2808_c0_g1_2563_TPlot.pdf
TRINITY_DN2808_c0_g1:2568	si_s94	TRINITY_DN2808_c0_g1	2557	2577	2568	-35.50	-23.70	0.667605633802817	8.5	2-4,2576-2574;6-17,2572-2561	1-1,2577-2577[UP5];5-5,2573-2573[SIL];18-21,2560-2557[UP3]	....((((((((((((.(((.&.))).))))))))))))....	UCUGCCGGAGCGAAGAUGGAU&CUUCUUCUUCGCUUCGGAUUG	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2808_c0_g1_2568_TPlot.pdf
TRINITY_DN2808_c0_g1:2569	si_s93	TRINITY_DN2808_c0_g1	2558	2578	2569	-34.80	-23.70	0.681034482758621	9.5	3-5,2576-2574;7-18,2572-2561	1-2,2578-2577[UP5];6-6,2573-2573[SIL];19-21,2560-2558[UP3]	...((((((((((((.(((..&..))).))))))))))))...	CUGCCGGAGCGAAGAUGGAUC&UCUUCUUCUUCGCUUCGGAUU	3	0.999999964244092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2808_c0_g1_2569_TPlot.pdf
TRINITY_DN2808_c0_g1:2571	si_s91	TRINITY_DN2808_c0_g1	2560	2582	2571	-34.70	-24.10	0.694524495677233	9.5	2-4,2581-2579;6-8,2576-2574;9-20,2572-2561	1-1,2582-2582[UP5];5-5,2578-2577[AILt];x-x,2573-2573[BULt];21-21,2560-2560[UP3]	.((((((((((((.(((..(((.&.)))-.)))-)))))))))))).	GCCGGAGCGAAGAUGGAUCGAAU&UUUC-UUCU-UCUUCGCUUCGGA	3	0.999999879536454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2808_c0_g1_2571_TPlot.pdf
TRINITY_DN2808_c0_g1:2572	si_s90	TRINITY_DN2808_c0_g1	2561	2583	2572	-35.30	-23.90	0.677053824362606	10.5	3-5,2581-2579;7-9,2576-2574;10-21,2572-2561	1-2,2583-2582[UP5];6-6,2578-2577[AILt];x-x,2573-2573[BULt]	((((((((((((.(((..(((..&..)))-.)))-))))))))))))	CCGGAGCGAAGAUGGAUCGAAUU&CUUUC-UUCU-UCUUCGCUUCGG	2	0.999999697158264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2808_c0_g1_2572_TPlot.pdf
TRINITY_DN2808_c0_g1:2708	si_s76	TRINITY_DN2808_c0_g1	2697	2717	2708	-23.60	-21.90	0.927966101694915	5.5	3-21,2715-2697	1-2,2717-2716[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AAGAAGGGAAAGAAAAAGGUC&AUUUUUUUUCUUUCCUUUCUU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2808_c0_g1_2708_TPlot.pdf
TRINITY_DN2808_c0_g1:3035	si_s603	TRINITY_DN2808_c0_g1	3024	3044	3035	-27.20	-19.20	0.705882352941177	9.5	1-2,3044-3043;5-17,3040-3028	3-4,3042-3041[SIL];18-21,3027-3024[UP3]	....(((((((((((((..((&))..)))))))))))))....	CUCAGGAGAAGAUUCGCAAGG&CCAAGCGAAUCUUUUUUAAAU	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN2808_c0_g1_3035_TPlot.pdf
TRINITY_DN2808_c0_g1:3036	si_s602	TRINITY_DN2808_c0_g1	3025	3045	3036	-28.10	-19.40	0.690391459074733	9	1-3,3045-3043;6-18,3040-3028	4-5,3042-3041[SIL];19-21,3027-3025[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UCAGGAGAAGAUUCGCAAGGG&UCCAAGCGAAUCUUUUUUAAA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN2808_c0_g1_3036_TPlot.pdf
TRINITY_DN2808_c0_g1:3037	si_s601	TRINITY_DN2808_c0_g1	3026	3046	3037	-28.30	-19.40	0.685512367491166	9.5	2-4,3045-3043;7-19,3040-3028	1-1,3046-3046[UP5];5-6,3042-3041[SIL];20-21,3027-3026[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	CAGGAGAAGAUUCGCAAGGGG&AUCCAAGCGAAUCUUUUUUAA	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN2808_c0_g1_3037_TPlot.pdf
TRINITY_DN2808_c0_g1:3040	si_s598	TRINITY_DN2808_c0_g1	3029	3049	3040	-28.20	-18.60	0.659574468085106	13	5-7,3045-3043;10-21,3040-3029	1-4,3049-3046[UP5];8-9,3042-3041[SIL]	((((((((((((..(((....&....)))..))))))))))))	GAGAAGAUUCGCAAGGGGCGG&UAAAUCCAAGCGAAUCUUUUU	2	0.943587266821235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN2808_c0_g1_3040_TPlot.pdf
TRINITY_DN2808_c0_g1:3063	si_a665	TRINITY_DN2808_c0_g1	3050	3072	3063	-29.60	-19.80	0.668918918918919	12.5	2-11,3071-3062;13-18,3058-3053	1-1,3072-3072[UP5];12-12,3061-3059[AILt];19-21,3052-3050[UP3]	...((((((...((((((((((.&.))))))))))--.))))))...	CAAGAGGAAGCGCAAUGGGCGUG&AAUGCCUAUUG--AUUCCUUAUU	2	0.995377114934657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN2808_c0_g1_3063_TPlot.pdf
TRINITY_DN2808_c0_g1:3064	si_a664	TRINITY_DN2808_c0_g1	3051	3073	3064	-29.60	-19.80	0.668918918918919	12.5	3-12,3071-3062;14-19,3058-3053	1-2,3073-3072[UP5];13-13,3061-3059[AILt];20-21,3052-3051[UP3]	..((((((...((((((((((..&..))))))))))--.))))))..	AAGAGGAAGCGCAAUGGGCGUGG&AAAUGCCUAUUG--AUUCCUUAU	2	0.992006333570158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN2808_c0_g1_3064_TPlot.pdf
TRINITY_DN2808_c0_g1:3085	si_s94	TRINITY_DN2808_c0_g1	3074	3094	3085	-35.50	-23.10	0.650704225352113	6.5	1-3,3094-3092;5-18,3090-3077	4-4,3091-3091[SIL];19-21,3076-3074[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UAUUCUGAAGCGAAGGAAAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999999999871404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2808_c0_g1_3085_TPlot.pdf
TRINITY_DN2808_c0_g1:3086	si_s93	TRINITY_DN2808_c0_g1	3075	3095	3086	-34.80	-23.10	0.663793103448276	6.5	2-4,3094-3092;6-19,3090-3077	1-1,3095-3095[UP5];5-5,3091-3091[SIL];20-21,3076-3075[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AUUCUGAAGCGAAGGAAAAGC&UCUUCUUCUUCGCUUCGGAUU	3	0.999999999992288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2808_c0_g1_3086_TPlot.pdf
TRINITY_DN2808_c0_g1:3088	si_s91	TRINITY_DN2808_c0_g1	3077	3097	3088	-34.70	-23.00	0.662824207492795	8.5	4-6,3094-3092;8-21,3090-3077	1-3,3097-3095[UP5];7-7,3091-3091[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UCUGAAGCGAAGGAAAAGCUG&UUUCUUCUUCUUCGCUUCGGA	2	0.999999998270109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN2808_c0_g1_3088_TPlot.pdf
TRINITY_DN2808_c0_g1:3321	si_a191	TRINITY_DN2808_c0_g1	3309	3330	3321	-32.00	-21.20	0.6625	7	1-4,3330-3327;6-12,3325-3319;14-15,3317-3316;16-20,3314-3310	5-5,3326-3326[SIL];13-13,3318-3318[SIL];x-x,3315-3315[BULt];21-21,3309-3309[UP3]	.(((((.((.(((((((.((((&)))).))))))).))-))))).	GAUUAGCUGCGCAGGGAUGGAU&AUCUUUCCCUGUUCA-CUAAUA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN2808_c0_g1_3321_TPlot.pdf
TRINITY_DN2808_c0_g1:4621	si_a496	TRINITY_DN2808_c0_g1	4610	4630	4621	-32.40	-21.90	0.675925925925926	9.5	4-6,4627-4625;8-16,4623-4615;18-20,4613-4611	1-3,4630-4628[UP5];7-7,4624-4624[SIL];17-17,4614-4614[SIL];21-21,4610-4610[UP3]	.(((.(((((((((.(((...&...))).))))))))).))).	UGGAUGGCGAAAAAGGACGCG&UAUGUCGUUUUUCGUCUUCCU	4	0.99999999585186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN2808_c0_g1_4621_TPlot.pdf
TRINITY_DN2808_c0_g1:903	si_s380	TRINITY_DN2808_c0_g1	891	912	903	-40.00	-26.70	0.6675	11	4-10,909-903;11-15,901-897;18-21,894-891	1-3,912-910[UP5];x-x,902-902[BULt];16-17,896-895[SIL]	((((..(((((.(((((((...&...)))))))-)))))..))))	GAUGGUGGGCGAGACGCGCUGU&CUCGCGUGUC-CGCCUUACAUU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN2808_c0_g1_903_TPlot.pdf
TRINITY_DN2808_c0_g1:9629	si_a622	TRINITY_DN2808_c0_g1	9616	9638	9629	-35.10	-23.18	0.66039886039886	12.5	3-12,9636-9627;15-20,9622-9617	1-2,9638-9637[UP5];13-14,9626-9623[AILt];21-21,9616-9616[UP3]	.((((((....((((((((((..&..))))))))))--..)))))).	CUCGGCAACGCGUACGCCUGGGG&GACUAGGCGUAU--UAUGUCGAU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN2808_c0_g1_9629_TPlot.pdf
TRINITY_DN2809_c0_g1:2750	si_a92	TRINITY_DN2809_c0_g1	2740	2759	2750	-28.60	-19.50	0.681818181818182	3	1-10,2759-2750;12-15,2749-2746;17-21,2744-2740	11-11,x-x[BULq];16-16,2745-2745[SIL]	(((((.((((-((((((((((&)))))))))).)))).)))))	AUCUUGGUUA-CUUUUCUUAA&UUAAGAAAAGGUAACGAAGAU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN2809_c0_g1_2750_TPlot.pdf
TRINITY_DN280_c0_g1:322	si_a292	TRINITY_DN280_c0_g1	313	331	322	-26.70	-17.48	0.654681647940075	6	2-11,330-321;16-21,318-313	1-1,331-331[UP5];12-15,320-319[AILq]	((((((..--((((((((((.&.))))))))))....))))))	CGAAUCAG--UUAAAUCCAAA&CUUGGAUUUAAAAAAGAUUCG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a292_TRINITY_DN280_c0_g1_322_TPlot.pdf
TRINITY_DN28100_c0_g1:77	si_a323	TRINITY_DN28100_c0_g1	65	87	77	-26.80	-17.42	0.65	10.5	1-3,87-85;4-12,83-75;16-21,70-65	x-x,84-84[BULt];13-15,74-71[AILt]	((((((....(((((((((.(((&)))-)))))))))-...))))))	GAGGAAGCCUGGAAGUCAUCGGA&UCC-AUGAUUUUU-UUAUUCCUU	2	0.999997966586644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN28100_c0_g1_77_TPlot.pdf
TRINITY_DN28110_c0_g1:148	si_s68	TRINITY_DN28110_c0_g1	137	161	148	-23.10	-15.70	0.67965367965368	12	2-8,160-154;9-21,149-137	1-1,161-161[UP5];x-x,153-150[BULt]	(((((((((((((....(((((((.&.)))))))----)))))))))))))	AAGGAAGAAGAAUCCGAAGAGGUUA&CAACUUCU----AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN28110_c0_g1_148_TPlot.pdf
TRINITY_DN2811_c0_g1:175	si_s84	TRINITY_DN2811_c0_g1	161	184	175	-32.30	-21.80	0.674922600619195	5.5	1-5,184-180;7-15,178-170;16-21,166-161	6-6,179-179[SIL];x-x,169-167[BULt]	((((((...(((((((((.(((((&))))).)))))))))---))))))	CGAAGAAAAGGAAGAAAGUAAAGA&UCUUUCCUUUCUUCU---UCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2811_c0_g1_175_TPlot.pdf
TRINITY_DN2811_c0_g1:176	si_s83	TRINITY_DN2811_c0_g1	162	185	176	-30.90	-20.70	0.669902912621359	5.5	1-6,185-180;8-16,178-170;17-21,166-162	7-7,179-179[SIL];x-x,169-167[BULt]	(((((...(((((((((.((((((&)))))).)))))))))---)))))	GAAGAAAAGGAAGAAAGUAAAGAA&UUCUUUCCUUUCUUCU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2811_c0_g1_176_TPlot.pdf
TRINITY_DN2811_c0_g1:178	si_s68	TRINITY_DN2811_c0_g1	167	189	178	-23.10	-15.40	0.666666666666667	8	1-2,189-188;4-8,186-182;9-21,179-167	3-3,187-187[SIL];x-x,181-180[BULt]	(((((((((((((..(((((.((&)).)))))--)))))))))))))	AAAGGAAGAAAGUAAAGAAGAUG&CAACUUCU--AUUUUUUUUCUUU	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN2811_c0_g1_178_TPlot.pdf
TRINITY_DN2811_c0_g1:179	si_s80	TRINITY_DN2811_c0_g1	168	188	179	-28.20	-18.70	0.663120567375887	5.5	2-9,187-180;11-20,178-169	1-1,188-188[UP5];10-10,179-179[SIL];21-21,168-168[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	AAGGAAGAAAGUAAAGAAGAU&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2811_c0_g1_179_TPlot.pdf
TRINITY_DN2811_c0_g1:180	si_s79	TRINITY_DN2811_c0_g1	169	189	180	-26.20	-18.70	0.713740458015267	6.5	3-10,187-180;12-21,178-169	1-2,189-188[UP5];11-11,179-179[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AGGAAGAAAGUAAAGAAGAUG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2811_c0_g1_180_TPlot.pdf
TRINITY_DN2811_c0_g1:181	si_s78	TRINITY_DN2811_c0_g1	170	190	181	-26.20	-17.90	0.683206106870229	8.5	4-11,187-180;13-21,178-170	1-3,190-188[UP5];12-12,179-179[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GGAAGAAAGUAAAGAAGAUGG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2811_c0_g1_181_TPlot.pdf
TRINITY_DN2811_c0_g1:182	si_s73	TRINITY_DN2811_c0_g1	167	191	182	-24.00	-16.30	0.679166666666667	8	1-12,191-180;13-15,178-176;16-21,172-167	x-x,179-179[BULt];x-x,175-173[BULt]	((((((...(((.((((((((((((&))))))))))))-)))---))))))	AAAGGAAGAAAGUAAAGAAGAUGGA&UCUAUUUUUUUU-CUU---UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2811_c0_g1_182_TPlot.pdf
TRINITY_DN2812_c0_g1:788	si_s182	TRINITY_DN2812_c0_g1	777	806	788	-32.60	-22.10	0.677914110429448	24	3-6,804-801;7-19,791-779	1-2,806-805[UP5];x-x,800-792[BULt];20-21,778-777[UP3]	..(((((((((((((.........((((..&..))))---------)))))))))))))..	CUGUAGUCGUUACUCUAUGGUAUAGGGCUC&AUGCCC---------GAGUAACGAUUAUUU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN2812_c0_g1_788_TPlot.pdf
TRINITY_DN2813_c0_g1:2556	si_s280	TRINITY_DN2813_c0_g1	2536	2565	2556	-36.40	-24.90	0.684065934065934	23	2-12,2564-2554;13-20,2544-2537	1-1,2565-2565[UP5];x-x,2553-2545[BULt];21-21,2536-2536[UP3]	.((((((((.........(((((((((((.&.)))))))))))---------)))))))).	GCGGCUGGGUGCGAGUGCCGUGUUGUGUCU&CGACAUAAUACG---------CCUAGUCGA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s280_TRINITY_DN2813_c0_g1_2556_TPlot.pdf
TRINITY_DN28150_c0_g1:4126	si_s552	TRINITY_DN28150_c0_g1	4115	4135	4126	-21.10	-14.20	0.672985781990521	8	4-12,4132-4124;14-20,4122-4116	1-3,4135-4133[UP5];13-13,4123-4123[SIL];21-21,4115-4115[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	AGAAAGUGAUAAUUCUAUAAC&AAAAUAGAAUUAAUAUUUUCG	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN28150_c0_g1_4126_TPlot.pdf
TRINITY_DN28151_c0_g1:279	si_s286	TRINITY_DN28151_c0_g1	267	291	279	-35.20	-24.00	0.681818181818182	13.5	2-5,290-287;6-11,283-278;12-19,276-269	1-1,291-291[UP5];x-x,286-284[BULt];x-x,277-277[BULt];20-21,268-267[UP3]	..((((((((.((((((...((((.&.))))---))))))-))))))))..	UGCCAGUCGAUCUGGGCCGAGUGUA&AAUAC---GCCUAG-UCGAUUGGAA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN28151_c0_g1_279_TPlot.pdf
TRINITY_DN2815_c0_g1:1127	si_s423	TRINITY_DN2815_c0_g1	1116	1137	1127	-21.50	-14.20	0.66046511627907	9.5	1-5,1137-1133;8-19,1129-1118	6-7,1132-1130[AILt];20-21,1117-1116[UP3]	..((((((((((((...(((((&)))))-..))))))))))))..	UUGUUAUUGUUAUGGUUGAAUA&UAUUC-UAUAUAACAAUAAUUA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN2815_c0_g1_1127_TPlot.pdf
TRINITY_DN2815_c0_g1:1128	si_s422	TRINITY_DN2815_c0_g1	1117	1138	1128	-21.30	-14.20	0.666666666666667	9.5	2-6,1137-1133;9-20,1129-1118	1-1,1138-1138[UP5];7-8,1132-1130[AILt];21-21,1117-1117[UP3]	.((((((((((((...(((((.&.)))))-..)))))))))))).	UGUUAUUGUUAUGGUUGAAUAA&AUAUUC-UAUAUAACAAUAAUU	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN2815_c0_g1_1128_TPlot.pdf
TRINITY_DN2815_c0_g1:46	si_a408	TRINITY_DN2815_c0_g1	35	55	46	-20.10	-14.30	0.711442786069652	6	1-16,55-40	17-21,39-35[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUAACAAAUAUAAACAAAAUA&UGUUUUGUUUAUAUUUAAAUA	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2815_c0_g1_46_TPlot.pdf
TRINITY_DN28166_c0_g1:673	si_a600	TRINITY_DN28166_c0_g1	662	682	673	-29.70	-22.80	0.767676767676768	6.5	1-3,682-680;6-19,677-664	4-5,679-678[SIL];20-21,663-662[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	CGUGGGAUUGCGAAAACACUG&CAGAAUUUUCGCAAUUCCAAU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN28166_c0_g1_673_TPlot.pdf
TRINITY_DN2817_c0_g1:1348	si_s70	TRINITY_DN2817_c0_g1	1333	1357	1348	-25.80	-16.90	0.655038759689922	9	2-14,1356-1344;15-20,1339-1334	1-1,1357-1357[UP5];x-x,1343-1340[BULt];21-21,1333-1333[UP3]	.((((((....(((((((((((((.&.)))))))))))))----)))))).	AGAAAGAACGCAAAGAAAUGGAGGC&ACUUCUAUUUUUUU----UCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2817_c0_g1_1348_TPlot.pdf
TRINITY_DN2817_c0_g1:2113	si_s899	TRINITY_DN2817_c0_g1	2102	2132	2113	-28.30	-19.00	0.671378091872792	23	1-6,2132-2127;7-18,2116-2105	x-x,2126-2117[BULt];19-21,2104-2102[UP3]	...((((((((((((..........((((((&))))))----------))))))))))))...	GGAUGAAAUUGAAGAGGUCGUGGAGGAAAGC&GCUUUC----------UCUUCAAUUUCAAUU	4	0.999999947454981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN2817_c0_g1_2113_TPlot.pdf
TRINITY_DN2817_c0_g1:4296	si_a544	TRINITY_DN2817_c0_g1	4285	4305	4296	-28.90	-20.50	0.709342560553633	6	1-12,4305-4294;15-20,4291-4286	13-14,4293-4292[SIL];21-21,4285-4285[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	CGAAGAGUGAGGUUGAAUCGA&UCGGUUCAAUCUAUUUCUUUA	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN2817_c0_g1_4296_TPlot.pdf
TRINITY_DN2817_c0_g1:4305	si_a767	TRINITY_DN2817_c0_g1	4294	4314	4305	-30.10	-20.00	0.664451827242525	7.5	2-7,4313-4308;9-20,4306-4295	1-1,4314-4314[UP5];8-8,4307-4307[SIL];21-21,4294-4294[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AGGUUGAAUCGAUAGAAGACG&GGUUUUUGAUUGAUUCAACUC	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN2817_c0_g1_4305_TPlot.pdf
TRINITY_DN2817_c0_g1:631	si_s69	TRINITY_DN2817_c0_g1	620	641	631	-23.40	-16.80	0.717948717948718	7.5	2-9,640-633;10-19,631-622	1-1,641-641[UP5];x-x,632-632[BULt];20-21,621-620[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	ACAAGAAGAAGACGUAGAAGUG&AACUUCUAU-UUUUUUUCUUUC	4	0.999999999999952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2817_c0_g1_631_TPlot.pdf
TRINITY_DN2817_c0_g1:7992	si_s253	TRINITY_DN2817_c0_g1	7979	8001	7992	-29.50	-20.60	0.698305084745763	9.5	1-7,8001-7995;9-14,7993-7988;15-19,7985-7981	8-8,7994-7994[SIL];x-x,7987-7986[BULt];20-21,7980-7979[UP3]	..(((((..((((((.(((((((&))))))).))))))--)))))..	ACGAGUAUAGUGUAUGGGGGAGU&AUUUCCCGAUAUAU--UACUCAA	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN2817_c0_g1_7992_TPlot.pdf
TRINITY_DN28196_c0_g1:1028	si_a326	TRINITY_DN28196_c0_g1	1016	1037	1028	-26.20	-17.20	0.656488549618321	8	4-13,1034-1025;14-21,1023-1016	1-3,1037-1035[UP5];x-x,1024-1024[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GAUAAGGAUGUAGAAAAAUAUG&AUGAUUUUUUUAU-UCCUUGUC	4	0.999999999983584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN28196_c0_g1_1028_TPlot.pdf
TRINITY_DN28196_c0_g1:1192	si_s899	TRINITY_DN28196_c0_g1	1181	1202	1192	-28.30	-19.20	0.678445229681979	7	1-3,1202-1200;4-11,1198-1191;13-21,1189-1181	x-x,1199-1199[BULt];12-12,1190-1190[SIL]	(((((((((.((((((((.(((&)))-)))))))).)))))))))	AGUUGGGAUAGAGGAGAACAGU&GCU-UUCUCUUCAAUUUCAAUU	3	0.999999030805929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN28196_c0_g1_1192_TPlot.pdf
TRINITY_DN28196_c0_g1:1230	si_a20	TRINITY_DN28196_c0_g1	1219	1239	1230	-26.70	-17.90	0.670411985018727	6	1-5,1239-1235;7-12,1233-1228;15-21,1225-1219	6-6,1234-1234[SIL];13-14,1227-1226[SIL]	(((((((..((((((.(((((&))))).))))))..)))))))	UAGGACUUUAAAUAACUGGGU&GCCUAUUUAUUUUUAGUUCUA	2	0.999639564237272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN28196_c0_g1_1230_TPlot.pdf
TRINITY_DN28196_c0_g1:1679	si_a407	TRINITY_DN28196_c0_g1	1668	1688	1679	-19.80	-13.00	0.656565656565657	9.5	2-4,1687-1685;7-17,1682-1672	1-1,1688-1688[UP5];5-6,1684-1683[SIL];18-21,1671-1668[UP3]	....(((((((((((..(((.&.)))..)))))))))))....	CAUGAAGUAUAAACAUUACAU&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN28196_c0_g1_1679_TPlot.pdf
TRINITY_DN28196_c0_g1:1680	si_a406	TRINITY_DN28196_c0_g1	1669	1689	1680	-19.80	-13.00	0.656565656565657	10.5	3-5,1687-1685;8-18,1682-1672	1-2,1689-1688[UP5];6-7,1684-1683[SIL];19-21,1671-1669[UP3]	...(((((((((((..(((..&..)))..)))))))))))...	AUGAAGUAUAAACAUUACAUC&AUUGUUUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN28196_c0_g1_1680_TPlot.pdf
TRINITY_DN28196_c0_g1:1681	si_a405	TRINITY_DN28196_c0_g1	1670	1690	1681	-19.80	-13.00	0.656565656565657	11.5	4-6,1687-1685;9-19,1682-1672	1-3,1690-1688[UP5];7-8,1684-1683[SIL];20-21,1671-1670[UP3]	..(((((((((((..(((...&...)))..)))))))))))..	UGAAGUAUAAACAUUACAUCA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN28196_c0_g1_1681_TPlot.pdf
TRINITY_DN2819_c0_g1:1635	si_a553	TRINITY_DN2819_c0_g1	1624	1644	1635	-33.70	-22.10	0.655786350148368	6	1-8,1644-1637;10-14,1635-1631;17-21,1628-1624	9-9,1636-1636[SIL];15-16,1630-1629[SIL]	(((((..(((((.((((((((&)))))))).)))))..)))))	ACGGGACGAUGAUGAAAUGGA&UCUAUUUCUUUAUCUCCCCGU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN2819_c0_g1_1635_TPlot.pdf
TRINITY_DN2819_c0_g1:966	si_a783	TRINITY_DN2819_c0_g1	955	975	966	-24.70	-16.30	0.659919028340081	9	3-15,973-961;17-19,959-957	1-2,975-974[UP5];16-16,960-960[SIL];20-21,956-955[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UCGUGAGAGAAUGGAAGAGGA&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2819_c0_g1_966_TPlot.pdf
TRINITY_DN281_c0_g1:5310	si_a494	TRINITY_DN281_c0_g1	5299	5319	5310	-29.50	-19.30	0.654237288135593	10.5	5-9,5315-5311;11-15,5309-5305;17-21,5303-5299	1-4,5319-5316[UP5];10-10,5310-5310[SIL];16-16,5304-5304[SIL]	(((((.(((((.(((((....&....))))).))))).)))))	GAAGAGGGAAAUCGACAACCA&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN281_c0_g1_5310_TPlot.pdf
TRINITY_DN28213_c0_g1:237	si_s484	TRINITY_DN28213_c0_g1	226	246	237	-20.50	-13.60	0.663414634146341	11	1-13,246-234	14-21,233-226[UP3]	........(((((((((((((&)))))))))))))........	AGAUUUACAAAUGAAUGUGGG&CCUAUAUUUAUUUAAAUAUAA	1	0.0998654579309489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN28213_c0_g1_237_TPlot.pdf
TRINITY_DN28213_c0_g1:239	si_s482	TRINITY_DN28213_c0_g1	228	248	239	-21.20	-13.80	0.650943396226415	11	2-15,247-234	1-1,248-248[UP5];16-21,233-228[UP3]	......((((((((((((((.&.))))))))))))))......	AUUUACAAAUGAAUGUGGGGC&AUCCUAUAUUUAUUUAAAUAU	4	0.999998012315855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN28213_c0_g1_239_TPlot.pdf
TRINITY_DN2821_c0_g3:856	si_a784	TRINITY_DN2821_c0_g3	844	865	856	-24.70	-16.70	0.676113360323887	7	2-12,864-854;13-15,852-850;17-21,848-844	1-1,865-865[UP5];x-x,853-853[BULt];16-16,849-849[SIL]	(((((.(((.(((((((((((.&.)))))))))))-))).)))))	AAAAUCGAACGAGUGGAAGAGG&ACUCUUCUAUUU-UUCUAUUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2821_c0_g3_856_TPlot.pdf
TRINITY_DN2821_c0_g3:861	si_a75	TRINITY_DN2821_c0_g3	850	870	861	-21.30	-14.60	0.685446009389671	10.5	1-6,870-865;8-16,863-855	7-7,864-864[SIL];17-21,854-850[UP3]	.....(((((((((.((((((&)))))).))))))))).....	GAACGAGUGGAAGAGGAUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.999999991802264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN2821_c0_g3_861_TPlot.pdf
TRINITY_DN2821_c0_g3:863	si_a73	TRINITY_DN2821_c0_g3	852	872	863	-21.90	-16.10	0.735159817351598	9	1-8,872-865;10-18,863-855	9-9,864-864[SIL];19-21,854-852[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	ACGAGUGGAAGAGGAUUUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN2821_c0_g3_863_TPlot.pdf
TRINITY_DN28225_c0_g2:17	si_s81	TRINITY_DN28225_c0_g2	6	27	17	-28.90	-20.10	0.695501730103806	8	1-9,27-19;10-16,17-11;18-21,9-6	x-x,18-18[BULt];17-17,10-10[SIL]	((((.(((((((.(((((((((&)))))))))-))))))).))))	AGAGAGAGAGAGAGAGAGAGGA&UUUUCUUUC-CUUUCUUCUUCU	2	0.999999999999896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN28225_c0_g2_17_TPlot.pdf
TRINITY_DN28225_c0_g2:19	si_a785	TRINITY_DN28225_c0_g2	9	28	19	-25.90	-18.50	0.714285714285714	7	1-7,28-22;9-15,20-14;17-21,13-9	8-8,21-21[SIL];16-16,x-x[BULq]	(((((-(((((((.(((((((&))))))).))))))).)))))	GAGAG-AGAGAGAGAGAGGAG&CUCUUCUAUUUUUCUAUUUUC	4	0.999999896158245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN28225_c0_g2_19_TPlot.pdf
TRINITY_DN28225_c0_g2:24	si_s75	TRINITY_DN28225_c0_g2	12	33	24	-24.00	-21.20	0.883333333333333	5.5	1-15,33-19;16-21,17-12	x-x,18-18[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	AGAGAGAGAGAGAGGAGAAAUG&UAUUUUUUUUCUUUC-CUUUCU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN28225_c0_g2_24_TPlot.pdf
TRINITY_DN28225_c0_g2:27	si_s72	TRINITY_DN28225_c0_g2	15	36	27	-24.10	-21.50	0.892116182572614	6	1-18,36-19;19-21,17-15	x-x,18-18[BULt]	(((.((((((((((((((((((&))))))))))))))))))-)))	GAGAGAGAGAGGAGAAAUGGAA&UUCUAUUUUUUUUCUUUC-CUU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN28225_c0_g2_27_TPlot.pdf
TRINITY_DN28227_c0_g1:1899	si_s90	TRINITY_DN28227_c0_g1	1888	1910	1899	-35.30	-23.10	0.654390934844193	8	1-3,1910-1908;4-9,1906-1901;10-12,1899-1897;14-20,1895-1889	x-x,1907-1907[BULt];x-x,1900-1900[BULt];13-13,1896-1896[SIL];21-21,1888-1888[UP3]	.(((((((.(((.((((((.(((&)))-))))))-))).))))))).	ACGAAGCGUGGAUAGAGGACAAG&CUU-UCUUCU-UCUUCGCUUCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN28227_c0_g1_1899_TPlot.pdf
TRINITY_DN28227_c0_g1:4004	si_s415	TRINITY_DN28227_c0_g1	3993	4013	4004	-26.60	-17.90	0.672932330827068	8	2-14,4012-4000	1-1,4013-4013[UP5];15-21,3999-3993[UP3]	.......(((((((((((((.&.))))))))))))).......	CUGCCGCAGAAUAUGUCGUUG&AAACGACAUAUUCUAUAUAAC	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN28227_c0_g1_4004_TPlot.pdf
TRINITY_DN28227_c0_g1:4006	si_s413	TRINITY_DN28227_c0_g1	3995	4015	4006	-24.80	-17.90	0.721774193548387	10	4-16,4012-4000	1-3,4015-4013[UP5];17-21,3999-3995[UP3]	.....(((((((((((((...&...))))))))))))).....	GCCGCAGAAUAUGUCGUUGGC&AAAAACGACAUAUUCUAUAUA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN28227_c0_g1_4006_TPlot.pdf
TRINITY_DN28227_c0_g1:4009	si_s410	TRINITY_DN28227_c0_g1	3998	4017	4009	-28.10	-19.10	0.679715302491103	9	2-3,4016-4015;7-19,4012-4000	1-1,4017-4017[UP5];4-6,4014-4013[AILq];20-21,3999-3998[UP3]	..(((((((((((((..-((.&.))...)))))))))))))..	GCAGAAUAUGUCGUUGG-CGG&ACGAAAAACGACAUAUUCUAU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s410_TRINITY_DN28227_c0_g1_4009_TPlot.pdf
TRINITY_DN28227_c0_g1:4143	si_a635	TRINITY_DN28227_c0_g1	4132	4153	4143	-26.10	-17.00	0.651340996168582	11	2-7,4152-4147;10-18,4143-4135	1-1,4153-4153[UP5];8-9,4146-4144[AILt];19-21,4134-4132[UP3]	...(((((((((...((((((.&.))))))-..)))))))))...	AAGGCUCGAAAAUCCUCGACAA&AUGUCGA-UUUUUUUGAGUAAU	4	0.999999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN28227_c0_g1_4143_TPlot.pdf
TRINITY_DN28227_c0_g1:4632	si_s434	TRINITY_DN28227_c0_g1	4621	4640	4632	-21.50	-14.80	0.688372093023256	4.5	1-8,4640-4633;10-14,4632-4628;16-21,4626-4621	9-9,x-x[BULq];15-15,4627-4627[SIL]	((((((.(((((-((((((((&)))))))).))))).))))))	UGUAUAUUAUGU-GUUAUUGU&ACAAUAAUUACAUAUUAUAUA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN28227_c0_g1_4632_TPlot.pdf
TRINITY_DN28227_c0_g1:4642	si_s426	TRINITY_DN28227_c0_g1	4631	4655	4642	-23.60	-15.80	0.669491525423729	11	1-8,4655-4648;9-16,4643-4636;18-21,4634-4631	x-x,4647-4644[BULt];17-17,4635-4635[SIL]	((((.((((((((....((((((((&))))))))----)))))))).))))	GUGUUAUUGUUGUUUAGUAUGUAGA&UCUAUAUA----ACAAUAAUUACAU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN28227_c0_g1_4642_TPlot.pdf
TRINITY_DN2822_c0_g1:1235	si_a684	TRINITY_DN2822_c0_g1	1224	1245	1235	-35.80	-24.30	0.67877094972067	8	2-9,1244-1237;10-14,1235-1231;16-19,1229-1226	1-1,1245-1245[UP5];x-x,1236-1236[BULt];15-15,1230-1230[SIL];20-21,1225-1224[UP3]	..((((.(((((.((((((((.&.))))))))-))))).))))..	ACGUGUCCGAAGUCCGUGUGAU&UUCACGCGG-UUUCGAACACAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a684_TRINITY_DN2822_c0_g1_1235_TPlot.pdf
TRINITY_DN28235_c0_g1:236	si_a733	TRINITY_DN28235_c0_g1	225	244	236	-44.60	-29.82	0.668609865470852	9	1-7,244-238;12-17,234-229;19-21,227-225	8-11,237-235[AILq];18-18,228-228[SIL]	(((.((((((...-(((((((&)))))))....)))))).)))	UGGACAGGGGACU-GAUGCCC&GGGCAUCUUUACCCCUGGCCA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a733_TRINITY_DN28235_c0_g1_236_TPlot.pdf
TRINITY_DN28235_c0_g1:2541	si_a69	TRINITY_DN28235_c0_g1	2524	2550	2541	-24.00	-16.00	0.666666666666667	18	2-11,2549-2540;12-19,2533-2526	1-1,2550-2550[UP5];x-x,2539-2534[BULt];20-21,2525-2524[UP3]	..((((((((......((((((((((.&.))))))))))------))))))))..	CCGAAGAGCGAGAGUGGUUUGAAAGAU&UUCUUUCAAAU------UGUUUUUCAU	4	0.999999999985496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN28235_c0_g1_2541_TPlot.pdf
TRINITY_DN2823_c0_g1:4180	si_s566	TRINITY_DN2823_c0_g1	4170	4189	4180	-30.70	-20.00	0.651465798045603	9	1-10,4189-4180;14-18,4177-4173	11-13,4179-4178[AILq];19-21,4172-4170[UP3]	...(((((..-((((((((((&))))))))))...)))))...	UGGAUUCCGU-UCCCGAAGAU&AUUUUCGGGACAAGGAAUAAA	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s566_TRINITY_DN2823_c0_g1_4180_TPlot.pdf
TRINITY_DN2823_c0_g1:4962	si_a54	TRINITY_DN2823_c0_g1	4950	4971	4962	-37.30	-24.30	0.651474530831099	9.5	3-14,4969-4958;17-20,4954-4951	1-2,4971-4970[UP5];15-16,4957-4955[AILt];21-21,4950-4950[UP3]	.((((...((((((((((((..&..))))))))))))-..)))).	CGAGACAUCGGGUCGGCUCCCC&UAGGAGUCGACUCG-CUUCUUU	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN2823_c0_g1_4962_TPlot.pdf
TRINITY_DN2823_c0_g1:7818	si_s389	TRINITY_DN2823_c0_g1	7805	7827	7818	-38.40	-25.20	0.65625	7	1-8,7827-7820;11-14,7817-7814;15-18,7812-7809;19-21,7807-7805	9-10,7819-7818[SIL];x-x,7813-7813[BULt];x-x,7808-7808[BULt]	(((.((((.((((..((((((((&))))))))..))))-))))-)))	CUUGCCUUCGGAAGUUGAGGCGG&CCGCCUUACAUUCC-AAGG-AAG	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s389_TRINITY_DN2823_c0_g1_7818_TPlot.pdf
TRINITY_DN2823_c0_g1:8793	si_a440	TRINITY_DN2823_c0_g1	8782	8802	8793	-30.80	-21.90	0.711038961038961	10	1-14,8802-8789	15-21,8788-8782[UP3]	.......((((((((((((((&)))))))))))))).......	CGGACACUCUCAUGUCCGGCG&CGUUGGAUAUGAGAUAAUUGU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN2823_c0_g1_8793_TPlot.pdf
TRINITY_DN2823_c0_g1:8797	si_a436	TRINITY_DN2823_c0_g1	8786	8806	8797	-33.80	-22.20	0.656804733727811	13	5-18,8802-8789	1-4,8806-8803[UP5];19-21,8788-8786[UP3]	...((((((((((((((....&....))))))))))))))...	CACUCUCAUGUCCGGCGUGCG&GAUCCGUUGGAUAUGAGAUAA	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a436_TRINITY_DN2823_c0_g1_8797_TPlot.pdf
TRINITY_DN2823_c0_g1:9216	si_a727	TRINITY_DN2823_c0_g1	9205	9226	9216	-39.70	-29.40	0.740554156171285	8.5	4-7,9223-9220;8-16,9218-9210;18-21,9208-9205	1-3,9226-9224[UP5];x-x,9219-9219[BULt];17-17,9209-9209[SIL]	((((.(((((((((.((((...&...))))-))))))))).))))	GGGGCAGAGAUGCCGCGAGACU&UUACUCG-GGCAUCUUUACCCC	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN2823_c0_g1_9216_TPlot.pdf
TRINITY_DN2823_c0_g1:9297	si_s569	TRINITY_DN2823_c0_g1	9286	9307	9297	-30.60	-20.20	0.660130718954248	10	1-4,9307-9304;5-13,9302-9294	x-x,9303-9303[BULt];14-21,9293-9286[UP3]	........(((((((((.((((&))))-)))))))))........	ACACACAAUCCUUGUCCGCGAA&UUCG-GGACAAGGAAUAAAAAA	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN2823_c0_g1_9297_TPlot.pdf
TRINITY_DN2823_c0_g1:9302	si_s564	TRINITY_DN2823_c0_g1	9291	9312	9302	-31.20	-20.30	0.650641025641026	14	6-9,9307-9304;10-18,9302-9294	1-5,9312-9308[UP5];x-x,9303-9303[BULt];19-21,9293-9291[UP3]	...(((((((((.((((.....&.....))))-)))))))))...	CAAUCCUUGUCCGCGAACGAGA&AUAUUUUCG-GGACAAGGAAUA	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s564_TRINITY_DN2823_c0_g1_9302_TPlot.pdf
TRINITY_DN2823_c0_g1:9330	si_s374	TRINITY_DN2823_c0_g1	9319	9339	9330	-45.60	-29.70	0.651315789473684	9.5	4-8,9336-9332;10-12,9330-9328;14-21,9326-9319	1-3,9339-9337[UP5];9-9,9331-9331[SIL];13-13,9327-9327[SIL]	((((((((.(((.(((((...&...))))).))).))))))))	GGGCGGACCCGCUGGCGAAAU&CGAUCGCUCGCGUGUCCGCCU	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN2823_c0_g1_9330_TPlot.pdf
TRINITY_DN28246_c0_g1:521	si_s612	TRINITY_DN28246_c0_g1	505	530	521	-28.20	-18.40	0.652482269503546	11	1-8,530-523;11-14,520-517;15-21,511-505	9-10,522-521[SIL];x-x,516-512[BULt]	(((((((.....((((..((((((((&))))))))..))))-----)))))))	AUCGCUUAGAUCGGAUAGAAGAGAGA&UCUUUUUUAAAUCC-----AAGCGAU	0	0.118892067305814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN28246_c0_g1_521_TPlot.pdf
TRINITY_DN2824_c0_g1:1251	si_s809	TRINITY_DN2824_c0_g1	1239	1260	1251	-28.50	-21.60	0.757894736842105	7.5	1-10,1260-1251;11-18,1249-1242	x-x,1250-1250[BULt];19-21,1241-1239[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UAAAAGAAGAGUGUGAUGAAGA&UCUUCGUUAC-CUUUUCUUAAU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN2824_c0_g1_1251_TPlot.pdf
TRINITY_DN2824_c0_g1:1256	si_s804	TRINITY_DN2824_c0_g1	1244	1265	1256	-27.90	-19.10	0.684587813620072	12	6-15,1260-1251;16-21,1249-1244	1-5,1265-1261[UP5];x-x,1250-1250[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	GAAGAGUGUGAUGAAGAAAGUA&UUUUAUCUUCGUUAC-CUUUUC	3	0.999999765044861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN2824_c0_g1_1256_TPlot.pdf
TRINITY_DN28263_c0_g1:193	si_a127	TRINITY_DN28263_c0_g1	182	202	193	-23.10	-15.60	0.675324675324675	10	1-9,202-194;12-18,191-185	10-11,193-192[SIL];19-21,184-182[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	GGUGUUGCUGGAGCUAUGAAA&UUUUAUAGCAAUAGUAAUUAA	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN28263_c0_g1_193_TPlot.pdf
TRINITY_DN28263_c0_g2:92	si_s767	TRINITY_DN28263_c0_g2	83	101	92	-28.10	-18.60	0.661921708185053	5	1-15,101-87;18-21,86-83	16-17,x-x[BULq]	((((--(((((((((((((((&)))))))))))))))..))))	GGUA--AGUGAUUAAUUGUUG&CAACGAUUAAUUACUAUUGCU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN28263_c0_g2_92_TPlot.pdf
TRINITY_DN28263_c0_g2:94	si_s765	TRINITY_DN28263_c0_g2	83	103	94	-25.70	-17.30	0.673151750972763	8.5	3-17,101-87	1-2,103-102[UP5];18-21,86-83[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUAAGUGAUUAAUUGUUGAG&AACAACGAUUAAUUACUAUUG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s765_TRINITY_DN28263_c0_g2_94_TPlot.pdf
TRINITY_DN28263_c0_g2:98	si_s761	TRINITY_DN28263_c0_g2	87	107	98	-25.90	-17.00	0.656370656370656	12.5	7-21,101-87	1-6,107-102[UP5]	(((((((((((((((......&......)))))))))))))))	AGUGAUUAAUUGUUGAGUUCA&AAACAACAACGAUUAAUUACU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN28263_c0_g2_98_TPlot.pdf
TRINITY_DN28267_c0_g3:1209	si_a603	TRINITY_DN28267_c0_g3	1197	1218	1209	-29.80	-19.70	0.661073825503356	11	2-10,1217-1209;12-19,1206-1199	1-1,1218-1218[UP5];11-11,1208-1207[AILt];20-21,1198-1197[UP3]	..((((((((..(((((((((.&.)))))))))-.))))))))..	AGGAUUGGAACAUGCGGGGGUA&AAUUUUCGCA-AUUCCAAUCGA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN28267_c0_g3_1209_TPlot.pdf
TRINITY_DN28267_c0_g3:849	si_a764	TRINITY_DN28267_c0_g3	835	858	849	-28.90	-19.04	0.658823529411765	7.5	2-13,857-846;15-20,841-836	1-1,858-858[UP5];14-14,845-842[AILt];21-21,835-835[UP3]	.((((((....((((((((((((.&.))))))))))))---.)))))).	AUGAAUCUUUUGUUAAAAACCCAC&UUGGGUUUUUGAU---UGAUUCAA	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN28267_c0_g3_849_TPlot.pdf
TRINITY_DN28267_c0_g3:850	si_a763	TRINITY_DN28267_c0_g3	836	859	850	-28.80	-18.84	0.654166666666667	8.5	3-14,857-846;16-21,841-836	1-2,859-858[UP5];15-15,845-842[AILt]	((((((....((((((((((((..&..))))))))))))---.))))))	UGAAUCUUUUGUUAAAAACCCACA&UUUGGGUUUUUGAU---UGAUUCA	3	0.999999999988202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN28267_c0_g3_850_TPlot.pdf
TRINITY_DN28287_c0_g1:2215	si_s69	TRINITY_DN28287_c0_g1	2204	2224	2215	-23.40	-16.10	0.688034188034188	9.5	3-13,2222-2212;16-21,2209-2204	1-2,2224-2223[UP5];14-15,2211-2210[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GAGGGGUUAGAGGUAGAAGCC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN28287_c0_g1_2215_TPlot.pdf
TRINITY_DN28295_c0_g1:109	si_s483	TRINITY_DN28295_c0_g1	98	118	109	-21.40	-14.40	0.672897196261682	8	1-6,118-113;8-16,111-103;19-21,100-98	7-7,112-112[SIL];17-18,102-101[SIL]	(((..(((((((((.((((((&)))))).)))))))))..)))	UGUUGUUGAGUAGAAGUAGGA&UCCUAUAUUUAUUUAAAUAUA	2	0.987946290639231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN28295_c0_g1_109_TPlot.pdf
TRINITY_DN28309_c0_g1:125	si_s19	TRINITY_DN28309_c0_g1	114	134	125	-27.80	-18.90	0.679856115107914	9	2-16,133-119	1-1,134-134[UP5];17-21,118-114[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CACCAGUAGUCGAUGUAGUAG&UUACUAUAUUGAUUGCAACUA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN28309_c0_g1_125_TPlot.pdf
TRINITY_DN28309_c0_g1:126	si_s18	TRINITY_DN28309_c0_g1	115	135	126	-27.50	-18.90	0.687272727272727	10	3-17,133-119	1-2,135-134[UP5];18-21,118-115[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACCAGUAGUCGAUGUAGUAGA&AUUACUAUAUUGAUUGCAACU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN28309_c0_g1_126_TPlot.pdf
TRINITY_DN28309_c0_g1:127	si_s17	TRINITY_DN28309_c0_g1	116	136	127	-27.20	-18.90	0.694852941176471	11	4-18,133-119	1-3,136-134[UP5];19-21,118-116[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCAGUAGUCGAUGUAGUAGAC&UAUUACUAUAUUGAUUGCAAC	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN28309_c0_g1_127_TPlot.pdf
TRINITY_DN28309_c0_g1:128	si_s16	TRINITY_DN28309_c0_g1	117	137	128	-25.60	-18.90	0.73828125	11.5	5-19,133-119	1-4,137-134[UP5];20-21,118-117[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAGUAGUCGAUGUAGUAGACG&UUAUUACUAUAUUGAUUGCAA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN28309_c0_g1_128_TPlot.pdf
TRINITY_DN28309_c0_g1:129	si_s15	TRINITY_DN28309_c0_g1	118	138	129	-25.60	-18.90	0.73828125	12.5	6-20,133-119	1-5,138-134[UP5];21-21,118-118[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGUAGUCGAUGUAGUAGACGA&AUUAUUACUAUAUUGAUUGCA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN28309_c0_g1_129_TPlot.pdf
TRINITY_DN28309_c0_g1:130	si_s14	TRINITY_DN28309_c0_g1	119	139	130	-25.30	-18.40	0.727272727272727	13.5	7-21,133-119	1-6,139-134[UP5]	(((((((((((((((......&......)))))))))))))))	GUAGUCGAUGUAGUAGACGAU&UAUUAUUACUAUAUUGAUUGC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN28309_c0_g1_130_TPlot.pdf
TRINITY_DN28309_c0_g1:132	si_a623	TRINITY_DN28309_c0_g1	121	146	132	-33.10	-22.00	0.664652567975831	14.5	2-9,145-138;10-21,132-121	1-1,146-146[UP5];x-x,137-133[BULt]	((((((((((((.....((((((((.&.))))))))-----))))))))))))	AGUCGAUGUAGUAGACGAUGCCUAGA&ACUAGGCGU-----AUUAUGUCGAUU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN28309_c0_g1_132_TPlot.pdf
TRINITY_DN2831_c0_g1:559	si_a656	TRINITY_DN2831_c0_g1	549	568	559	-33.80	-22.40	0.662721893491124	5.5	1-11,568-558;13-16,556-553;18-20,552-550	12-12,557-557[SIL];17-17,x-x[BULq];21-21,549-549[UP3]	.(((-((((.(((((((((((&))))))))))).)))).))).	CCAA-GGGCUUUUCCUGAUAU&AUAUCGGGAAAUGCCUAUUGA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN2831_c0_g1_559_TPlot.pdf
TRINITY_DN2831_c0_g1:561	si_a654	TRINITY_DN2831_c0_g1	550	570	561	-31.70	-22.90	0.722397476340694	6.5	2-13,569-558;15-18,556-553	1-1,570-570[UP5];14-14,557-557[SIL];19-21,552-550[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	CAAGGGCUUUUCCUGAUAUAA&AUAUAUCGGGAAAUGCCUAUU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a654_TRINITY_DN2831_c0_g1_561_TPlot.pdf
TRINITY_DN2831_c0_g1:562	si_a653	TRINITY_DN2831_c0_g1	551	571	562	-31.70	-22.90	0.722397476340694	7.5	3-14,569-558;16-19,556-553	1-2,571-570[UP5];15-15,557-557[SIL];20-21,552-551[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	AAGGGCUUUUCCUGAUAUAAA&AAUAUAUCGGGAAAUGCCUAU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a653_TRINITY_DN2831_c0_g1_562_TPlot.pdf
TRINITY_DN2831_c0_g1:563	si_a652	TRINITY_DN2831_c0_g1	552	572	563	-31.90	-22.90	0.717868338557994	8.5	4-15,569-558;17-20,556-553	1-3,572-570[UP5];16-16,557-557[SIL];21-21,552-552[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	AGGGCUUUUCCUGAUAUAAAA&UAAUAUAUCGGGAAAUGCCUA	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN2831_c0_g1_563_TPlot.pdf
TRINITY_DN2831_c0_g1:564	si_a651	TRINITY_DN2831_c0_g1	553	573	564	-33.30	-22.50	0.675675675675676	6.5	1-2,573-572;5-16,569-558;18-21,556-553	3-4,571-570[SIL];17-17,557-557[SIL]	((((.((((((((((((..((&))..)))))))))))).))))	GGGCUUUUCCUGAUAUAAAAC&GUAAUAUAUCGGGAAAUGCCU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a651_TRINITY_DN2831_c0_g1_564_TPlot.pdf
TRINITY_DN2831_c0_g1:565	si_a650	TRINITY_DN2831_c0_g1	554	574	565	-33.30	-22.80	0.684684684684685	6	1-3,574-572;6-17,569-558;19-21,556-554	4-5,571-570[SIL];18-18,557-557[SIL]	(((.((((((((((((..(((&)))..)))))))))))).)))	GGCUUUUCCUGAUAUAAAACU&AGUAAUAUAUCGGGAAAUGCC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a650_TRINITY_DN2831_c0_g1_565_TPlot.pdf
TRINITY_DN2831_c0_g1:890	si_a167	TRINITY_DN2831_c0_g1	878	899	890	-34.00	-23.30	0.685294117647059	9	1-8,899-892;11-11,889-889;12-21,887-878	9-10,891-890[SIL];x-x,888-888[BULt]	((((((((((.(..((((((((&))))))))..)-))))))))))	GUCUAGAUGGUGGAAGUGGAUU&AAUCUAUUCAC-CCGUCUAGAU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a167_TRINITY_DN2831_c0_g1_890_TPlot.pdf
TRINITY_DN2831_c0_g1:967	si_s608	TRINITY_DN2831_c0_g1	956	978	967	-26.70	-17.90	0.670411985018727	7	2-4,977-975;5-12,972-965;14-21,963-956	1-1,978-978[UP5];x-x,974-973[BULt];13-13,964-964[SIL]	((((((((.((((((((..(((.&.)))--)))))))).))))))))	CUUGGAUUAAAAAGAGAAAUUCU&CGAA--UCUUUUUUAAAUCCAAG	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN2831_c0_g1_967_TPlot.pdf
TRINITY_DN28320_c1_g1:311	si_a138	TRINITY_DN28320_c1_g1	300	319	311	-26.30	-18.30	0.695817490494297	7.5	3-7,317-313;9-19,312-302	1-2,319-318[UP5];8-8,x-x[BULq];20-21,301-300[UP3]	..(((((((((((-(((((..&..))))).)))))))))))..	GUCAACAGCGAUU-AUUACAU&UAGUAAUUAAUCGUUGUUGUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN28320_c1_g1_311_TPlot.pdf
TRINITY_DN28320_c3_g1:185	si_a447	TRINITY_DN28320_c3_g1	174	194	185	-25.70	-16.80	0.653696498054475	7.5	1-9,194-186;11-18,184-177	10-10,185-185[SIL];19-21,176-174[UP3]	...((((((((.(((((((((&))))))))).))))))))...	AUCAACAGCGACUAUUUCAUA&UAUGAGAUAAUUGUUGUUAUA	4	0.999982273507496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN28320_c3_g1_185_TPlot.pdf
TRINITY_DN28322_c0_g1:1669	si_s255	TRINITY_DN28322_c0_g1	1658	1678	1669	-29.40	-20.30	0.690476190476191	8	2-12,1677-1667;15-17,1664-1662	1-1,1678-1678[UP5];13-14,1666-1665[SIL];18-21,1661-1658[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	GCUAGAGCUGUAUAUCGGGAU&UUCCCGAUAUAUUACUCAAAA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN28322_c0_g1_1669_TPlot.pdf
TRINITY_DN28322_c0_g1:1670	si_s254	TRINITY_DN28322_c0_g1	1659	1679	1670	-29.40	-20.30	0.690476190476191	8.5	3-13,1677-1667;16-18,1664-1662	1-2,1679-1678[UP5];14-15,1666-1665[SIL];19-21,1661-1659[UP3]	...(((..(((((((((((..&..)))))))))))..)))...	CUAGAGCUGUAUAUCGGGAUA&UUUCCCGAUAUAUUACUCAAA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN28322_c0_g1_1670_TPlot.pdf
TRINITY_DN28322_c0_g1:2453	si_a11	TRINITY_DN28322_c0_g1	2442	2462	2453	-28.80	-20.50	0.711805555555556	9.5	4-18,2459-2445	1-3,2462-2460[UP5];19-21,2444-2442[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGUUGAAUAGGUUUUCUCAAG&GAAGAGAAAGCCUAUUUAUUU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a11_TRINITY_DN28322_c0_g1_2453_TPlot.pdf
TRINITY_DN28322_c0_g1:2454	si_a10	TRINITY_DN28322_c0_g1	2443	2463	2454	-29.50	-20.50	0.694915254237288	10.5	5-19,2459-2445	1-4,2463-2460[UP5];20-21,2444-2443[UP3]	..(((((((((((((((....&....)))))))))))))))..	GUUGAAUAGGUUUUCUCAAGA&UGAAGAGAAAGCCUAUUUAUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN28322_c0_g1_2454_TPlot.pdf
TRINITY_DN28322_c0_g1:2457	si_a7	TRINITY_DN28322_c0_g1	2446	2466	2457	-29.10	-19.20	0.65979381443299	14	8-21,2459-2446	1-7,2466-2460[UP5]	((((((((((((((.......&.......))))))))))))))	GAAUAGGUUUUCUCAAGAUAU&AAUUGAAGAGAAAGCCUAUUU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN28322_c0_g1_2457_TPlot.pdf
TRINITY_DN28322_c0_g1:2475	si_a409	TRINITY_DN28322_c0_g1	2464	2484	2475	-19.50	-13.30	0.682051282051282	8.5	1-16,2484-2469	17-21,2468-2464[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUGGUGAAUAUAGAUGAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999525165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN28322_c0_g1_2475_TPlot.pdf
TRINITY_DN28322_c0_g1:2476	si_a408	TRINITY_DN28322_c0_g1	2465	2485	2476	-20.10	-13.30	0.661691542288557	8.5	2-17,2484-2469	1-1,2485-2485[UP5];18-21,2468-2465[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUGGUGAAUAUAGAUGAAACC&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999999757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN28322_c0_g1_2476_TPlot.pdf
TRINITY_DN28322_c0_g1:2477	si_a407	TRINITY_DN28322_c0_g1	2466	2486	2477	-19.80	-13.30	0.671717171717172	9.5	3-18,2484-2469	1-2,2486-2485[UP5];19-21,2468-2466[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGGUGAAUAUAGAUGAAACCU&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN28322_c0_g1_2477_TPlot.pdf
TRINITY_DN28322_c0_g1:2478	si_a406	TRINITY_DN28322_c0_g1	2467	2487	2478	-19.80	-13.30	0.671717171717172	10.5	4-19,2484-2469	1-3,2487-2485[UP5];20-21,2468-2467[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGUGAAUAUAGAUGAAACCUU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN28322_c0_g1_2478_TPlot.pdf
TRINITY_DN28322_c0_g1:2479	si_a405	TRINITY_DN28322_c0_g1	2468	2488	2479	-19.80	-13.30	0.671717171717172	11.5	5-20,2484-2469	1-4,2488-2485[UP5];21-21,2468-2468[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUGAAUAUAGAUGAAACCUUA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN28322_c0_g1_2479_TPlot.pdf
TRINITY_DN2834_c0_g1:1663	si_a736	TRINITY_DN2834_c0_g1	1652	1672	1663	-40.20	-28.30	0.703980099502488	14.5	8-20,1665-1653	1-7,1672-1666[UP5];21-21,1652-1652[UP3]	.(((((((((((((.......&.......))))))))))))).	CCAUGGCCGGGGGUCCCGCCG&CAUCUUUACCCCUGGCCAUGA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN2834_c0_g1_1663_TPlot.pdf
TRINITY_DN2834_c0_g1:1962	si_a145	TRINITY_DN2834_c0_g1	1948	1971	1962	-28.10	-19.80	0.704626334519573	10	3-14,1969-1958;15-21,1954-1948	1-2,1971-1970[UP5];x-x,1957-1955[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	GCUUUGAUAAGACGACGACGAUAG&UAAUCGUUGUUGUU---UUAAGGU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN2834_c0_g1_1962_TPlot.pdf
TRINITY_DN2835_c0_g1:1044	si_a230	TRINITY_DN2835_c0_g1	1033	1057	1044	-26.90	-17.66	0.656505576208179	16.5	1-8,1057-1050;11-20,1043-1034	9-10,1049-1044[AILt];21-21,1033-1033[UP3]	.((((((((((......((((((((&))))))))----..)))))))))).	ACGGAUUGAUUUUAAGGAGAGGCGU&AUGUUUCU----AUAAUCAAUUCGA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN2835_c0_g1_1044_TPlot.pdf
TRINITY_DN2835_c0_g1:503	si_s73	TRINITY_DN2835_c0_g1	492	512	503	-24.00	-17.60	0.733333333333333	7	1-12,512-501;14-20,499-493	13-13,500-500[SIL];21-21,492-492[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CAAGGAAAAGGAAGAGGUAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999981583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2835_c0_g1_503_TPlot.pdf
TRINITY_DN2835_c0_g1:504	si_s72	TRINITY_DN2835_c0_g1	493	513	504	-24.10	-17.70	0.734439834024896	6.5	2-13,512-501;15-21,499-493	1-1,513-513[UP5];14-14,500-500[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGGAAAAGGAAGAGGUAGAC&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999917622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2835_c0_g1_504_TPlot.pdf
TRINITY_DN2836_c0_g1:1696	si_s438	TRINITY_DN2836_c0_g1	1684	1705	1696	-21.20	-13.80	0.650943396226415	8.5	3-12,1703-1694;13-19,1692-1686	1-2,1705-1704[UP5];x-x,1693-1693[BULt];20-21,1685-1684[UP3]	..(((((((.((((((((((..&..))))))))))-)))))))..	UCUAUGUAUAGAUAUGUAAUGU&UAAUUACAUAUU-AUAUAUAAC	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN2836_c0_g1_1696_TPlot.pdf
TRINITY_DN2836_c0_g1:1780	si_s437	TRINITY_DN2836_c0_g1	1769	1789	1780	-19.70	-14.10	0.715736040609137	8	1-11,1789-1779;13-18,1777-1772	12-12,1778-1778[SIL];19-21,1771-1769[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UACUAUGUGUUGUGUAAUUGU&AUAAUUACAUAUUAUAUAUAA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN2836_c0_g1_1780_TPlot.pdf
TRINITY_DN2836_c0_g1:1782	si_s435	TRINITY_DN2836_c0_g1	1771	1791	1782	-20.90	-17.80	0.851674641148325	5	1-13,1791-1779;15-20,1777-1772	14-14,1778-1778[SIL];21-21,1771-1771[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	CUAUGUGUUGUGUAAUUGUUG&CAAUAAUUACAUAUUAUAUAU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN2836_c0_g1_1782_TPlot.pdf
TRINITY_DN2836_c0_g1:1783	si_s434	TRINITY_DN2836_c0_g1	1772	1792	1783	-21.50	-19.50	0.906976744186046	3.5	1-14,1792-1779;16-21,1777-1772	15-15,1778-1778[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UAUGUGUUGUGUAAUUGUUGU&ACAAUAAUUACAUAUUAUAUA	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN2836_c0_g1_1783_TPlot.pdf
TRINITY_DN2836_c0_g1:1784	si_s433	TRINITY_DN2836_c0_g1	1773	1793	1784	-21.10	-18.30	0.867298578199052	4.5	2-15,1792-1779;17-21,1777-1773	1-1,1793-1793[UP5];16-16,1778-1778[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AUGUGUUGUGUAAUUGUUGUG&AACAAUAAUUACAUAUUAUAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN2836_c0_g1_1784_TPlot.pdf
TRINITY_DN2836_c0_g1:1785	si_s432	TRINITY_DN2836_c0_g1	1774	1794	1785	-21.30	-17.30	0.812206572769953	6.5	3-16,1792-1779;18-21,1777-1774	1-2,1794-1793[UP5];17-17,1778-1778[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UGUGUUGUGUAAUUGUUGUGA&UAACAAUAAUUACAUAUUAUA	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN2836_c0_g1_1785_TPlot.pdf
TRINITY_DN2836_c0_g1:1787	si_s430	TRINITY_DN2836_c0_g1	1776	1796	1787	-21.30	-15.30	0.71830985915493	11.5	5-18,1792-1779	1-4,1796-1793[UP5];19-21,1778-1776[UP3]	...((((((((((((((....&....))))))))))))))...	UGUUGUGUAAUUGUUGUGACC&UAUAACAAUAAUUACAUAUUA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN2836_c0_g1_1787_TPlot.pdf
TRINITY_DN2836_c0_g1:1788	si_s429	TRINITY_DN2836_c0_g1	1777	1797	1788	-21.10	-15.30	0.725118483412322	12.5	6-19,1792-1779	1-5,1797-1793[UP5];20-21,1778-1777[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUGUGUAAUUGUUGUGACCU&AUAUAACAAUAAUUACAUAUU	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN2836_c0_g1_1788_TPlot.pdf
TRINITY_DN2836_c0_g1:7065	si_a58	TRINITY_DN2836_c0_g1	7054	7075	7065	-34.60	-24.50	0.708092485549133	8	2-6,7074-7070;7-17,7068-7058	1-1,7075-7075[UP5];x-x,7069-7069[BULt];18-21,7057-7054[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	UCUCAAAGAGGCGAGAUCGACG&AGUCGA-CUCGCUUCUUUCAAA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN2836_c0_g1_7065_TPlot.pdf
TRINITY_DN2836_c0_g1:7066	si_a57	TRINITY_DN2836_c0_g1	7055	7076	7066	-36.60	-24.50	0.669398907103825	8.5	3-7,7074-7070;8-18,7068-7058	1-2,7076-7075[UP5];x-x,7069-7069[BULt];19-21,7057-7055[UP3]	...(((((((((((.(((((..&..)))))-)))))))))))...	CUCAAAGAGGCGAGAUCGACGA&GAGUCGA-CUCGCUUCUUUCAA	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN2836_c0_g1_7066_TPlot.pdf
TRINITY_DN2836_c0_g1:7070	si_a54	TRINITY_DN2836_c0_g1	7058	7079	7070	-37.30	-24.50	0.656836461126005	11.5	6-10,7074-7070;11-21,7068-7058	1-5,7079-7075[UP5];x-x,7069-7069[BULt]	(((((((((((.(((((.....&.....)))))-)))))))))))	AAAGAGGCGAGAUCGACGAUGC&UAGGAGUCGA-CUCGCUUCUUU	3	0.99970778833738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN2836_c0_g1_7070_TPlot.pdf
TRINITY_DN2836_c0_g1:7689	si_s797	TRINITY_DN2836_c0_g1	7678	7703	7689	-30.00	-21.90	0.73	15.5	1-8,7703-7696;9-21,7690-7678	x-x,7695-7691[BULt]	(((((((((((((.....((((((((&))))))))-----)))))))))))))	UGAUGAGGAUGGACGAGGGUAUGAGC&GCUCGUAU-----UUUAUCUUCGUUA	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN2836_c0_g1_7689_TPlot.pdf
TRINITY_DN2836_c0_g1:7690	si_s796	TRINITY_DN2836_c0_g1	7679	7704	7690	-30.30	-21.90	0.722772277227723	15.5	1-9,7704-7696;10-21,7690-7679	x-x,7695-7691[BULt]	((((((((((((.....(((((((((&)))))))))-----))))))))))))	GAUGAGGAUGGACGAGGGUAUGAGCU&AGCUCGUAU-----UUUAUCUUCGUU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2836_c0_g1_7690_TPlot.pdf
TRINITY_DN2836_c0_g1:7696	si_s795	TRINITY_DN2836_c0_g1	7680	7705	7696	-30.30	-22.00	0.726072607260726	14.5	1-10,7705-7696;11-21,7690-7680	x-x,7695-7691[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	AUGAGGAUGGACGAGGGUAUGAGCUU&AAGCUCGUAU-----UUUAUCUUCGU	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN2836_c0_g1_7696_TPlot.pdf
TRINITY_DN2836_c0_g1:7697	si_s794	TRINITY_DN2836_c0_g1	7681	7706	7697	-31.20	-23.00	0.737179487179487	14.5	1-11,7706-7696;12-20,7690-7682	x-x,7695-7691[BULt];21-21,7681-7681[UP3]	.(((((((((.....(((((((((((&)))))))))))-----))))))))).	UGAGGAUGGACGAGGGUAUGAGCUUG&CAAGCUCGUAU-----UUUAUCUUCG	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN2836_c0_g1_7697_TPlot.pdf
TRINITY_DN2836_c0_g1:7698	si_s793	TRINITY_DN2836_c0_g1	7682	7707	7698	-30.50	-24.10	0.79016393442623	13.5	1-12,7707-7696;13-21,7690-7682	x-x,7695-7691[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	GAGGAUGGACGAGGGUAUGAGCUUGU&ACAAGCUCGUAU-----UUUAUCUUC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN2836_c0_g1_7698_TPlot.pdf
TRINITY_DN2836_c0_g1:7701	si_s790	TRINITY_DN2836_c0_g1	7689	7710	7701	-27.80	-19.60	0.705035971223022	9.5	4-18,7707-7693;20-21,7690-7689	1-3,7710-7708[UP5];19-19,7692-7691[AILt]	((..(((((((((((((((...&...)))))))))))))))-.))	GACGAGGGUAUGAGCUUGUGGC&AAAACAAGCUCGUAUUUU-AUC	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN2836_c0_g1_7701_TPlot.pdf
TRINITY_DN2836_c0_g1:7702	si_s789	TRINITY_DN2836_c0_g1	7691	7711	7702	-26.20	-19.40	0.740458015267176	11	5-19,7707-7693	1-4,7711-7708[UP5];20-21,7692-7691[UP3]	..(((((((((((((((....&....)))))))))))))))..	CGAGGGUAUGAGCUUGUGGCC&UAAAACAAGCUCGUAUUUUAU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN2836_c0_g1_7702_TPlot.pdf
TRINITY_DN2836_c0_g1:7703	si_s788	TRINITY_DN2836_c0_g1	7692	7712	7703	-26.20	-19.40	0.740458015267176	12	6-20,7707-7693	1-5,7712-7708[UP5];21-21,7692-7692[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAGGGUAUGAGCUUGUGGCCA&AUAAAACAAGCUCGUAUUUUA	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN2836_c0_g1_7703_TPlot.pdf
TRINITY_DN2836_c0_g1:7704	si_s787	TRINITY_DN2836_c0_g1	7693	7713	7704	-26.20	-19.00	0.725190839694656	13	7-21,7707-7693	1-6,7713-7708[UP5]	(((((((((((((((......&......)))))))))))))))	AGGGUAUGAGCUUGUGGCCAA&UAUAAAACAAGCUCGUAUUUU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN2836_c0_g1_7704_TPlot.pdf
TRINITY_DN2836_c0_g1:7705	si_s786	TRINITY_DN2836_c0_g1	7694	7714	7705	-27.90	-18.20	0.652329749103943	15	8-21,7707-7694	1-7,7714-7708[UP5]	((((((((((((((.......&.......))))))))))))))	GGGUAUGAGCUUGUGGCCAAU&CUAUAAAACAAGCUCGUAUUU	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s786_TRINITY_DN2836_c0_g1_7705_TPlot.pdf
TRINITY_DN2837_c0_g1:1514	si_a440	TRINITY_DN2837_c0_g1	1503	1522	1514	-30.80	-22.20	0.720779220779221	7	1-7,1522-1516;9-18,1515-1506	8-8,x-x[BULq];19-21,1505-1503[UP3]	...((((((((((-(((((((&))))))).))))))))))...	GGUGUUGUCUCAU-UCCGACG&CGUUGGAUAUGAGAUAAUUGU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN2837_c0_g1_1514_TPlot.pdf
TRINITY_DN2837_c0_g1:1552	si_s228	TRINITY_DN2837_c0_g1	1534	1561	1552	-34.10	-22.60	0.662756598240469	19.5	1-11,1561-1551;12-19,1543-1536	x-x,1550-1544[BULt];20-21,1535-1534[UP3]	..((((((((.......(((((((((((&)))))))))))-------))))))))..	GCUGGUUCCUGUGGCCUUGUUCAUGUGG&CCGCGUGAAUA-------AGGAAUCAAU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s228_TRINITY_DN2837_c0_g1_1552_TPlot.pdf
TRINITY_DN2837_c0_g1:1554	si_s226	TRINITY_DN2837_c0_g1	1536	1563	1554	-34.70	-22.90	0.659942363112392	13.5	3-13,1561-1551;14-21,1543-1536	1-2,1563-1562[UP5];x-x,1550-1544[BULt]	((((((((.......(((((((((((..&..)))))))))))-------))))))))	UGGUUCCUGUGGCCUUGUUCAUGUGGCA&AACCGCGUGAAUA-------AGGAAUCA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s226_TRINITY_DN2837_c0_g1_1554_TPlot.pdf
TRINITY_DN2837_c0_g1:1556	si_s224	TRINITY_DN2837_c0_g1	1545	1565	1556	-34.00	-23.20	0.682352941176471	9.5	1-2,1565-1564;5-18,1561-1548	3-4,1563-1562[SIL];19-21,1547-1545[UP3]	...((((((((((((((..((&))..))))))))))))))...	UGGCCUUGUUCAUGUGGCAUC&GAAACCGCGUGAAUAAGGAAU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s224_TRINITY_DN2837_c0_g1_1556_TPlot.pdf
TRINITY_DN2837_c0_g1:313	si_s897	TRINITY_DN2837_c0_g1	303	321	313	-31.30	-21.00	0.670926517571885	7.5	2-8,320-314;10-14,313-309;16-20,308-304	1-1,321-321[UP5];9-9,x-x[BULq];15-15,x-x[BULq];21-21,303-303[UP3]	.(((((-(((((-(((((((.&.))))))).))))).))))).	GUGAGA-UGGAG-GAGAGCCA&AGGCUUUCUCUUCAAUUUCAA	3	0.99999280884472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN2837_c0_g1_313_TPlot.pdf
TRINITY_DN2838_c0_g1:3174	si_s82	TRINITY_DN2838_c0_g1	3162	3183	3174	-28.90	-20.20	0.698961937716263	6	1-6,3183-3178;8-17,3176-3167;18-20,3165-3163	7-7,3177-3177[SIL];x-x,3166-3166[BULt];21-21,3162-3162[UP3]	.(((.((((((((((.((((((&)))))).))))))))))-))).	CAGACAGAAGGAGGGCAAGAAA&UUUCUUUCCUUUCUUCU-UCUU	2	0.999999999999526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2838_c0_g1_3174_TPlot.pdf
TRINITY_DN2838_c0_g1:3176	si_s80	TRINITY_DN2838_c0_g1	3164	3185	3176	-28.20	-20.30	0.719858156028369	5	1-8,3185-3178;10-19,3176-3167;20-21,3165-3164	9-9,3177-3177[SIL];x-x,3166-3166[BULt]	((.((((((((((.((((((((&)))))))).))))))))))-))	GACAGAAGGAGGGCAAGAAAAG&UUUUUCUUUCCUUUCUUCU-UC	2	0.999999999180213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2838_c0_g1_3176_TPlot.pdf
TRINITY_DN2838_c0_g1:3177	si_s79	TRINITY_DN2838_c0_g1	3166	3186	3177	-26.20	-20.40	0.778625954198473	5.5	1-9,3186-3178;11-20,3176-3167	10-10,3177-3177[SIL];21-21,3166-3166[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CAGAAGGAGGGCAAGAAAAGG&UUUUUUCUUUCCUUUCUUCUU	4	0.999999965938056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2838_c0_g1_3177_TPlot.pdf
TRINITY_DN2839_c0_g1:1224	si_a461	TRINITY_DN2839_c0_g1	1212	1233	1224	-21.50	-15.50	0.720930232558139	9.5	2-15,1232-1219;16-18,1217-1215	1-1,1233-1233[UP5];x-x,1218-1218[BULt];19-21,1214-1212[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	AUGUACGAUGUUGUGUGUAGCG&UGUUAUAUAUAAUAU-GUAAUU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN2839_c0_g1_1224_TPlot.pdf
TRINITY_DN2839_c0_g1:1225	si_a460	TRINITY_DN2839_c0_g1	1213	1234	1225	-21.60	-15.50	0.717592592592593	10.5	3-16,1232-1219;17-19,1217-1215	1-2,1234-1233[UP5];x-x,1218-1218[BULt];20-21,1214-1213[UP3]	..(((.((((((((((((((..&..))))))))))))))-)))..	UGUACGAUGUUGUGUGUAGCGU&UUGUUAUAUAUAAUAU-GUAAU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN2839_c0_g1_1225_TPlot.pdf
TRINITY_DN283_c0_g1:3251	si_a23	TRINITY_DN283_c0_g1	3240	3260	3251	-22.80	-15.70	0.68859649122807	15	8-20,3253-3241	1-7,3260-3254[UP5];21-21,3240-3240[UP3]	.(((((((((((((.......&.......))))))))))))).	CCUUAGAACUAGAACGGUGAU&UAUUUAUUUUUAGUUCUAAGA	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN283_c0_g1_3251_TPlot.pdf
TRINITY_DN283_c0_g1:3755	si_a478	TRINITY_DN283_c0_g1	3744	3764	3755	-21.30	-15.20	0.713615023474178	7	2-17,3763-3748	1-1,3764-3764[UP5];18-21,3747-3744[UP3]	....((((((((((((((((.&.))))))))))))))))....	GAAGUUUGUAUAGCAAUAAUA&AAUUAUUGUUAUAUAGAAUAU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN283_c0_g1_3755_TPlot.pdf
TRINITY_DN283_c0_g1:3756	si_a477	TRINITY_DN283_c0_g1	3745	3765	3756	-21.50	-15.20	0.706976744186047	8	3-18,3763-3748	1-2,3765-3764[UP5];19-21,3747-3745[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAGUUUGUAUAGCAAUAAUAA&UAAUUAUUGUUAUAUAGAAUA	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN283_c0_g1_3756_TPlot.pdf
TRINITY_DN283_c0_g1:3757	si_a476	TRINITY_DN283_c0_g1	3746	3766	3757	-22.90	-15.20	0.663755458515284	9	4-19,3763-3748	1-3,3766-3764[UP5];20-21,3747-3746[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGUUUGUAUAGCAAUAAUAAU&GUAAUUAUUGUUAUAUAGAAU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN283_c0_g1_3757_TPlot.pdf
TRINITY_DN283_c0_g1:3761	si_s772	TRINITY_DN283_c0_g1	3750	3770	3761	-23.20	-16.50	0.711206896551724	5	1-8,3770-3763;10-19,3761-3752	9-9,3762-3762[SIL];20-21,3751-3750[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UGUAUAGCAAUAAUAAUUGAU&AUUAAUUACUAUUGCUAUAAA	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN283_c0_g1_3761_TPlot.pdf
TRINITY_DN283_c0_g1:3764	si_s769	TRINITY_DN283_c0_g1	3753	3773	3764	-27.00	-20.10	0.744444444444444	4	1-11,3773-3763;13-21,3761-3753	12-12,3762-3762[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AUAGCAAUAAUAAUUGAUUGU&ACGAUUAAUUACUAUUGCUAU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN283_c0_g1_3764_TPlot.pdf
TRINITY_DN28404_c0_g1:153	si_s94	TRINITY_DN28404_c0_g1	141	162	153	-35.50	-24.20	0.68169014084507	7	2-11,161-152;12-18,150-144	1-1,162-162[UP5];x-x,151-151[BULt];19-21,143-141[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	AACUCCGAAGAUGAAGAAGAAU&CUUCUUCUUCG-CUUCGGAUUG	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN28404_c0_g1_153_TPlot.pdf
TRINITY_DN2840_c0_g1:4403	si_s93	TRINITY_DN2840_c0_g1	4391	4415	4403	-34.80	-22.70	0.652298850574713	13.5	1-9,4415-4407;10-12,4403-4401;13-18,4399-4394	x-x,4406-4404[BULt];x-x,4400-4400[BULt];19-21,4393-4391[UP3]	...((((((.(((...(((((((((&)))))))))---)))-))))))...	AACCCGAGGACGAGCAAGAAGGGGA&UCUUCUUCU---UCG-CUUCGGAUU	2	0.999999998453424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2840_c0_g1_4403_TPlot.pdf
TRINITY_DN2840_c0_g1:4407	si_s92	TRINITY_DN2840_c0_g1	4392	4416	4407	-34.90	-23.40	0.670487106017192	11.5	1-10,4416-4407;11-13,4403-4401;14-19,4399-4394	x-x,4406-4404[BULt];x-x,4400-4400[BULt];20-21,4393-4392[UP3]	..((((((.(((...((((((((((&))))))))))---)))-))))))..	ACCCGAGGACGAGCAAGAAGGGGAA&UUCUUCUUCU---UCG-CUUCGGAU	2	0.999999801648386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN2840_c0_g1_4407_TPlot.pdf
TRINITY_DN2840_c0_g1:7883	si_s532	TRINITY_DN2840_c0_g1	7872	7892	7883	-28.70	-19.90	0.693379790940767	9.5	4-12,7889-7881;14-20,7879-7873	1-3,7892-7890[UP5];13-13,7880-7880[SIL];21-21,7872-7872[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	GGAUCGGGACGAAGAUGAACU&AAAUCAUUUUUGAUCCGAUCA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN2840_c0_g1_7883_TPlot.pdf
TRINITY_DN2840_c0_g1:8000	si_s215	TRINITY_DN2840_c0_g1	7989	8009	8000	-37.40	-25.10	0.671122994652406	9	1-8,8009-8002;10-17,8000-7993	9-9,8001-8001[SIL];18-21,7992-7989[UP3]	....((((((((.((((((((&)))))))).))))))))....	AACGGCGGUUUCUAGCGCGAC&GUUGUGUUCGAAACCGCGUGA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN2840_c0_g1_8000_TPlot.pdf
TRINITY_DN2840_c0_g1:8002	si_s213	TRINITY_DN2840_c0_g1	7991	8011	8002	-37.10	-25.10	0.676549865229111	10	3-10,8009-8002;12-19,8000-7993	1-2,8011-8010[UP5];11-11,8001-8001[SIL];20-21,7992-7991[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	CGGCGGUUUCUAGCGCGACGG&CAGUUGUGUUCGAAACCGCGU	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s213_TRINITY_DN2840_c0_g1_8002_TPlot.pdf
TRINITY_DN2840_c0_g1:8306	si_s485	TRINITY_DN2840_c0_g1	8295	8315	8306	-18.10	-13.50	0.74585635359116	7.5	1-10,8315-8306;12-18,8304-8298	11-11,8305-8305[SIL];19-21,8297-8295[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AGAAUGUUUAUAUGAAUAUGG&CUAUAUUUAUUUAAAUAUAAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN2840_c0_g1_8306_TPlot.pdf
TRINITY_DN2842_c0_g1:3067	si_s312	TRINITY_DN2842_c0_g1	3055	3076	3067	-29.00	-19.00	0.655172413793103	13	5-13,3072-3064;14-20,3062-3056	1-4,3076-3073[UP5];x-x,3063-3063[BULt];21-21,3055-3055[UP3]	.(((((((.(((((((((....&....)))))))))-))))))).	AAGCGAGGCGGGGCGGAAAGUC&AAAAUUCUGUCCU-UCUUGUUA	4	0.99999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2842_c0_g1_3067_TPlot.pdf
TRINITY_DN2843_c0_g1:284	si_a544	TRINITY_DN2843_c0_g1	273	295	284	-28.90	-19.10	0.660899653979239	9.5	3-8,293-288;9-21,285-273	1-2,295-294[UP5];x-x,287-286[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	UGAAGAAAUGGAUUAUGAAUCUA&UCGGUUCA--AUCUAUUUCUUUA	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN2843_c0_g1_284_TPlot.pdf
TRINITY_DN28441_c0_g1:20	si_a764	TRINITY_DN28441_c0_g1	5	29	20	-28.90	-20.20	0.698961937716263	7	2-13,28-17;14-20,12-6	1-1,29-29[UP5];x-x,16-13[BULt];21-21,5-5[UP3]	.(((((((....((((((((((((.&.))))))))))))----))))))).	CUGAAUCACGUGAUCAAAAACUCAU&UUGGGUUUUUGAU----UGAUUCAA	2	0.984730623737313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN28441_c0_g1_20_TPlot.pdf
TRINITY_DN28441_c0_g1:21	si_a763	TRINITY_DN28441_c0_g1	6	30	21	-28.80	-19.90	0.690972222222222	8	3-14,28-17;15-21,12-6	1-2,30-29[UP5];x-x,16-13[BULt]	(((((((....((((((((((((..&..))))))))))))----)))))))	UGAAUCACGUGAUCAAAAACUCAUA&UUUGGGUUUUUGAU----UGAUUCA	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN28441_c0_g1_21_TPlot.pdf
TRINITY_DN2845_c0_g1:1392	si_a353	TRINITY_DN2845_c0_g1	1382	1401	1392	-24.00	-15.70	0.654166666666667	7	4-15,1398-1387;17-20,1386-1383	1-3,1401-1399[UP5];16-16,x-x[BULq];21-21,1382-1382[UP3]	.((((-((((((((((((...&...)))))))))))).)))).	UGAUC-AAAUAGAAUUAAAAU&AUAUUAAUUCUAUUUUGAUCG	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN2845_c0_g1_1392_TPlot.pdf
TRINITY_DN2845_c0_g1:97	si_s512	TRINITY_DN2845_c0_g1	86	106	97	-24.80	-18.70	0.754032258064516	9	5-21,102-86	1-4,106-103[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUGAAUUGAGGAUAUAGCCCA&AAUUCUAUAUUCUUAAUUCGA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN2845_c0_g1_97_TPlot.pdf
TRINITY_DN2845_c0_g1:98	si_s511	TRINITY_DN2845_c0_g1	87	107	98	-25.50	-17.30	0.67843137254902	11	6-21,102-87	1-5,107-103[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAAUUGAGGAUAUAGCCCAA&CAAUUCUAUAUUCUUAAUUCG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN2845_c0_g1_98_TPlot.pdf
TRINITY_DN28462_c0_g2:232	si_a772	TRINITY_DN28462_c0_g2	220	243	232	-29.80	-19.50	0.654362416107383	10	1-6,243-238;7-10,235-232;11-19,230-222	x-x,237-236[BULt];x-x,231-231[BULt];20-21,221-220[UP3]	..(((((((((.((((..((((((&))))))--))))-)))))))))..	CCGAAGAGUUGUGAUCCCGAUCAA&UUGAUU--GAUU-CAACUCUUCUA	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN28462_c0_g2_232_TPlot.pdf
TRINITY_DN28463_c0_g1:166	si_s630	TRINITY_DN28463_c0_g1	155	175	166	-35.60	-24.50	0.688202247191011	7.5	3-11,173-165;13-20,163-156	1-2,175-174[UP5];12-12,164-164[SIL];21-21,155-155[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	UCGAACGCCAACGAGAAGACA&GAUCUUUUCGUAGGCGUUUGC	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN28463_c0_g1_166_TPlot.pdf
TRINITY_DN28463_c0_g1:422	si_a502	TRINITY_DN28463_c0_g1	409	431	422	-32.10	-24.20	0.753894080996885	8	1-13,431-419;14-18,416-412	x-x,418-417[BULt];19-21,411-409[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	AUCCCAAGAUGAGGGCGAGAAAC&GUUUUUCGUCUUC--CUUGGAAU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN28463_c0_g1_422_TPlot.pdf
TRINITY_DN2846_c0_g2:228	si_a497	TRINITY_DN2846_c0_g2	216	238	228	-32.00	-21.00	0.65625	10.5	1-5,238-234;7-8,232-231;10-16,228-222;17-21,220-216	6-6,233-233[SIL];9-9,230-229[AILt];x-x,221-221[BULt]	(((((.(((((((..((.(((((&))))).))-.)))))))-)))))	GGGGAGGGACGAGUUGAGGACAU&AUGUCGUU-UUUCGUCU-UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2846_c0_g2_228_TPlot.pdf
TRINITY_DN2846_c1_g1:167	si_s428	TRINITY_DN2846_c1_g1	155	176	167	-21.50	-14.02	0.652093023255814	11	1-10,176-167;14-20,162-156	11-13,166-163[AILt];21-21,155-155[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	CUGUGUGACAGUUUGUUGUGUA&UAUAUAACAA-UAAUUACAUAU	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN2846_c1_g1_167_TPlot.pdf
TRINITY_DN2847_c0_g1:2603	si_s530	TRINITY_DN2847_c0_g1	2592	2616	2603	-29.50	-19.90	0.674576271186441	13.5	2-9,2615-2608;10-20,2603-2593	1-1,2616-2616[UP5];x-x,2607-2604[BULt];21-21,2592-2592[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	UUCGGAUCGAAAUGUUGUGGUUUUA&CGAAAUCAU----UUUUGAUCCGAU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN2847_c0_g1_2603_TPlot.pdf
TRINITY_DN2847_c0_g1:2608	si_s529	TRINITY_DN2847_c0_g1	2593	2617	2608	-30.30	-19.80	0.653465346534653	14.5	3-10,2615-2608;11-21,2603-2593	1-2,2617-2616[UP5];x-x,2607-2604[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	UCGGAUCGAAAUGUUGUGGUUUUAA&UCGAAAUCAU----UUUUGAUCCGA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN2847_c0_g1_2608_TPlot.pdf
TRINITY_DN2847_c0_g1:2682	si_s516	TRINITY_DN2847_c0_g1	2668	2691	2682	-25.80	-18.40	0.713178294573643	10.5	1-11,2691-2681;12-16,2677-2673;18-21,2671-2668	x-x,2680-2678[BULt];17-17,2672-2672[SIL]	((((.(((((...(((((((((((&)))))))))))---))))).))))	GAUUCCGAGUUUAUGAGAAUGUGG&CUAUAUUCUUA---AUUCGAAAUC	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN2847_c0_g1_2682_TPlot.pdf
TRINITY_DN2847_c0_g1:2684	si_a414	TRINITY_DN2847_c0_g1	2673	2693	2684	-18.10	-12.20	0.674033149171271	12.5	1-10,2693-2684;13-18,2681-2676	11-12,2683-2682[SIL];19-21,2675-2673[UP3]	...((((((..((((((((((&))))))))))..))))))...	CGAGUUUAUGAGAAUGUGGGC&GUUUAUAUUUAAAUAAAUAUA	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN2847_c0_g1_2684_TPlot.pdf
TRINITY_DN2847_c0_g1:2685	si_a413	TRINITY_DN2847_c0_g1	2674	2694	2685	-18.40	-13.20	0.717391304347826	10.5	1-11,2694-2684;14-19,2681-2676	12-13,2683-2682[SIL];20-21,2675-2674[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	GAGUUUAUGAGAAUGUGGGCA&UGUUUAUAUUUAAAUAAAUAU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN2847_c0_g1_2685_TPlot.pdf
TRINITY_DN2847_c0_g1:2686	si_a412	TRINITY_DN2847_c0_g1	2675	2695	2686	-18.30	-13.40	0.73224043715847	9.5	2-12,2694-2684;15-20,2681-2676	1-1,2695-2695[UP5];13-14,2683-2682[SIL];21-21,2675-2675[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	AGUUUAUGAGAAUGUGGGCAG&UUGUUUAUAUUUAAAUAAAUA	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2847_c0_g1_2686_TPlot.pdf
TRINITY_DN2847_c0_g1:2687	si_a411	TRINITY_DN2847_c0_g1	2676	2696	2687	-17.90	-14.60	0.815642458100559	8	1-13,2696-2684;16-21,2681-2676	14-15,2683-2682[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	GUUUAUGAGAAUGUGGGCAGA&UUUGUUUAUAUUUAAAUAAAU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2847_c0_g1_2687_TPlot.pdf
TRINITY_DN2847_c0_g1:2689	si_a409	TRINITY_DN2847_c0_g1	2678	2698	2689	-19.50	-14.50	0.743589743589744	8	1-15,2698-2684;18-21,2681-2678	16-17,2683-2682[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UUAUGAGAAUGUGGGCAGAAU&GUUUUGUUUAUAUUUAAAUAA	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN2847_c0_g1_2689_TPlot.pdf
TRINITY_DN2847_c0_g1:2690	si_a408	TRINITY_DN2847_c0_g1	2679	2699	2690	-20.10	-13.60	0.676616915422885	9.5	2-16,2698-2684;19-21,2681-2679	1-1,2699-2699[UP5];17-18,2683-2682[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	UAUGAGAAUGUGGGCAGAAUU&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999646151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN2847_c0_g1_2690_TPlot.pdf
TRINITY_DN2847_c0_g1:2691	si_a407	TRINITY_DN2847_c0_g1	2680	2700	2691	-19.80	-12.90	0.651515151515151	13	3-17,2698-2684	1-2,2700-2699[UP5];18-21,2683-2680[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUGAGAAUGUGGGCAGAAUUU&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2847_c0_g1_2691_TPlot.pdf
TRINITY_DN2847_c0_g1:2692	si_a406	TRINITY_DN2847_c0_g1	2681	2701	2692	-19.80	-12.90	0.651515151515151	14	4-18,2698-2684	1-3,2701-2699[UP5];19-21,2683-2681[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGAGAAUGUGGGCAGAAUUUG&AUUGUUUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2847_c0_g1_2692_TPlot.pdf
TRINITY_DN2847_c0_g1:2693	si_a405	TRINITY_DN2847_c0_g1	2682	2702	2693	-19.80	-12.90	0.651515151515151	14.5	5-19,2698-2684	1-4,2702-2699[UP5];20-21,2683-2682[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAGAAUGUGGGCAGAAUUUGA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN2847_c0_g1_2693_TPlot.pdf
TRINITY_DN2847_c0_g1:2889	si_a411	TRINITY_DN2847_c0_g1	2878	2898	2889	-17.90	-11.80	0.659217877094972	8.5	1-3,2898-2896;5-17,2894-2882	4-4,2895-2895[SIL];18-21,2881-2878[UP3]	....(((((((((((((.(((&))).)))))))))))))....	GCAAAUUUGAGUAUAGAGAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.999999673677147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2847_c0_g1_2889_TPlot.pdf
TRINITY_DN2847_c0_g1:2890	si_a410	TRINITY_DN2847_c0_g1	2879	2899	2890	-17.80	-11.90	0.668539325842697	8.5	2-4,2898-2896;6-18,2894-2882	1-1,2899-2899[UP5];5-5,2895-2895[SIL];19-21,2881-2879[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	CAAAUUUGAGUAUAGAGAAAC&UUUUGUUUAUAUUUAAAUAAA	2	0.999999990119932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2847_c0_g1_2890_TPlot.pdf
TRINITY_DN2847_c0_g1:2960	si_a18	TRINITY_DN2847_c0_g1	2945	2968	2960	-26.30	-17.20	0.653992395437262	12.5	1-5,2968-2964;7-10,2963-2960;11-21,2955-2945	6-6,x-x[BULq];x-x,2959-2956[BULt]	(((((((((((....((((-(((((&))))).))))----)))))))))))	GAGCUAAAAGUCAAGGAAU-GGCUU&AAGCCUAUUU----AUUUUUAGUUC	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN2847_c0_g1_2960_TPlot.pdf
TRINITY_DN2847_c0_g1:3116	si_a838	TRINITY_DN2847_c0_g1	3105	3125	3116	-26.50	-18.00	0.679245283018868	4.5	2-12,3124-3114;14-19,3112-3107	1-1,3125-3125[UP5];13-13,3113-3113[SIL];20-21,3106-3105[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	CUUUAGCGCCUUCUAUUUUUA&AAAAAAUAGAAGUUGCUAACU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN2847_c0_g1_3116_TPlot.pdf
TRINITY_DN2847_c0_g1:3117	si_a837	TRINITY_DN2847_c0_g1	3106	3126	3117	-25.80	-18.00	0.697674418604651	5.5	3-13,3124-3114;15-20,3112-3107	1-2,3126-3125[UP5];14-14,3113-3113[SIL];21-21,3106-3106[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	UUUAGCGCCUUCUAUUUUUAU&AAAAAAAUAGAAGUUGCUAAC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN2847_c0_g1_3117_TPlot.pdf
TRINITY_DN2847_c0_g1:3118	si_a836	TRINITY_DN2847_c0_g1	3107	3127	3118	-24.10	-18.00	0.746887966804979	6.5	4-14,3124-3114;16-21,3112-3107	1-3,3127-3125[UP5];15-15,3113-3113[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UUAGCGCCUUCUAUUUUUAUU&AAAAAAAAUAGAAGUUGCUAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN2847_c0_g1_3118_TPlot.pdf
TRINITY_DN2847_c0_g1:3119	si_a835	TRINITY_DN2847_c0_g1	3108	3128	3119	-26.00	-17.20	0.661538461538462	4	1-3,3128-3126;5-15,3124-3114;17-21,3112-3108	4-4,3125-3125[SIL];16-16,3113-3113[SIL]	(((((.(((((((((((.(((&))).))))))))))).)))))	UAGCGCCUUCUAUUUUUAUUU&GAAAAAAAAUAGAAGUUGCUA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN2847_c0_g1_3119_TPlot.pdf
TRINITY_DN2847_c0_g1:485	si_s629	TRINITY_DN2847_c0_g1	473	494	485	-34.60	-22.80	0.658959537572254	6.5	2-10,493-485;11-19,483-475	1-1,494-494[UP5];x-x,484-484[BULt];20-21,474-473[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	GCGAUGCUUACAGAAAAGAUCU&CGAUCUUUUC-GUAGGCGUUUG	4	0.999923241221074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN2847_c0_g1_485_TPlot.pdf
TRINITY_DN2847_c0_g1:487	si_s627	TRINITY_DN2847_c0_g1	475	497	487	-36.10	-24.90	0.689750692520776	6.5	2-3,496-495;4-12,493-485;13-21,483-475	1-1,497-497[UP5];x-x,494-494[BULt];x-x,484-484[BULt]	(((((((((.(((((((((.((.&.))-)))))))))-)))))))))	GAUGCUUACAGAAAAGAUCUGCA&AGC-GAUCUUUUC-GUAGGCGUU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN2847_c0_g1_487_TPlot.pdf
TRINITY_DN2847_c0_g1:488	si_s626	TRINITY_DN2847_c0_g1	476	498	488	-36.10	-23.70	0.656509695290859	7	3-4,496-495;5-13,493-485;14-21,483-476	1-2,498-497[UP5];x-x,494-494[BULt];x-x,484-484[BULt]	((((((((.(((((((((.((..&..))-)))))))))-))))))))	AUGCUUACAGAAAAGAUCUGCAA&AAGC-GAUCUUUUC-GUAGGCGU	4	0.999809637231312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN2847_c0_g1_488_TPlot.pdf
TRINITY_DN2847_c0_g1:713	si_a412	TRINITY_DN2847_c0_g1	702	723	713	-18.30	-12.20	0.666666666666667	9.5	1-8,723-716;9-18,714-705	x-x,715-715[BULt];19-21,704-702[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	UACUUAUUUGGAUGGUGAACAG&UUGUUUAU-AUUUAAAUAAAUA	4	0.999998684623371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2847_c0_g1_713_TPlot.pdf
TRINITY_DN2847_c0_g1:719	si_a407	TRINITY_DN2847_c0_g1	707	728	719	-19.80	-13.90	0.702020202020202	7.5	2-13,727-716;14-21,714-707	1-1,728-728[UP5];x-x,715-715[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AUUUGGAUGGUGAACAGGAUAU&UUGUUUUGUUUAU-AUUUAAAU	4	0.99999999842781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN2847_c0_g1_719_TPlot.pdf
TRINITY_DN2847_c0_g1:776	si_a356	TRINITY_DN2847_c0_g1	765	785	776	-26.90	-19.10	0.71003717472119	11.5	5-19,781-767	1-4,785-782[UP5];20-21,766-765[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGCUGAUCAAGAUAGAGCACU&UUAAUUCUAUUUUGAUCGGAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2847_c0_g1_776_TPlot.pdf
TRINITY_DN2847_c0_g1:777	si_a355	TRINITY_DN2847_c0_g1	766	786	777	-26.80	-19.10	0.712686567164179	12.5	6-20,781-767	1-5,786-782[UP5];21-21,766-766[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GCUGAUCAAGAUAGAGCACUU&AUUAAUUCUAUUUUGAUCGGA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN2847_c0_g1_777_TPlot.pdf
TRINITY_DN2847_c0_g1:778	si_a354	TRINITY_DN2847_c0_g1	767	787	778	-26.20	-18.90	0.721374045801527	13	7-21,781-767	1-6,787-782[UP5]	(((((((((((((((......&......)))))))))))))))	CUGAUCAAGAUAGAGCACUUU&UAUUAAUUCUAUUUUGAUCGG	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN2847_c0_g1_778_TPlot.pdf
TRINITY_DN2847_c0_g1:779	si_a353	TRINITY_DN2847_c0_g1	768	788	779	-24.00	-15.90	0.6625	15	8-21,781-768	1-7,788-782[UP5]	((((((((((((((.......&.......))))))))))))))	UGAUCAAGAUAGAGCACUUUC&AUAUUAAUUCUAUUUUGAUCG	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN2847_c0_g1_779_TPlot.pdf
TRINITY_DN2848_c0_g2:3446	si_s10	TRINITY_DN2848_c0_g2	3434	3455	3446	-23.80	-16.20	0.680672268907563	6	1-15,3455-3441;16-19,3439-3436	x-x,3440-3440[BULt];20-21,3435-3434[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	GAGAUAUUGGUAAUAAUGGGUA&UACUUAUUAUUACUA-UAUUGA	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN2848_c0_g2_3446_TPlot.pdf
TRINITY_DN2848_c0_g2:3447	si_s9	TRINITY_DN2848_c0_g2	3435	3456	3447	-22.90	-16.60	0.724890829694323	5.5	1-16,3456-3441;17-20,3439-3436	x-x,3440-3440[BULt];21-21,3435-3435[UP3]	.((((.((((((((((((((((&))))))))))))))))-)))).	AGAUAUUGGUAAUAAUGGGUAG&UUACUUAUUAUUACUA-UAUUG	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN2848_c0_g2_3447_TPlot.pdf
TRINITY_DN2848_c0_g2:3448	si_s8	TRINITY_DN2848_c0_g2	3436	3457	3448	-21.30	-16.60	0.779342723004695	6	2-17,3456-3441;18-21,3439-3436	1-1,3457-3457[UP5];x-x,3440-3440[BULt]	((((.((((((((((((((((.&.))))))))))))))))-))))	GAUAUUGGUAAUAAUGGGUAGC&AUUACUUAUUAUUACUA-UAUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN2848_c0_g2_3448_TPlot.pdf
TRINITY_DN2848_c0_g2:3449	si_s7	TRINITY_DN2848_c0_g2	3438	3458	3449	-21.70	-15.90	0.732718894009217	9.5	3-18,3456-3441	1-2,3458-3457[UP5];19-21,3440-3438[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAUUGGUAAUAAUGGGUAGCC&UAUUACUUAUUAUUACUAUAU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN2848_c0_g2_3449_TPlot.pdf
TRINITY_DN2848_c0_g2:3452	si_s4	TRINITY_DN2848_c0_g2	3441	3461	3452	-21.60	-15.80	0.731481481481482	12.5	6-21,3456-3441	1-5,3461-3457[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGGUAAUAAUGGGUAGCCUUA&UUAUAUUACUUAUUAUUACUA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN2848_c0_g2_3452_TPlot.pdf
TRINITY_DN2848_c0_g2:3453	si_s3	TRINITY_DN2848_c0_g2	3442	3462	3453	-21.20	-14.60	0.688679245283019	14.5	7-21,3456-3442	1-6,3462-3457[UP5]	(((((((((((((((......&......)))))))))))))))	GGUAAUAAUGGGUAGCCUUAC&UUUAUAUUACUUAUUAUUACU	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2848_c0_g2_3453_TPlot.pdf
TRINITY_DN2848_c0_g2:3781	si_s61	TRINITY_DN2848_c0_g2	3770	3791	3781	-26.50	-17.30	0.652830188679245	8	1-4,3791-3788;6-8,3786-3784;10-21,3781-3770	5-5,3787-3787[SIL];9-9,3783-3782[AILt]	((((((((((((..(((.((((&)))).)))-.))))))))))))	GAAGAUGGGAGUAAGCUUACUU&AAGUUAGC-AACUUCUAUUUUU	4	0.999996071852019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN2848_c0_g2_3781_TPlot.pdf
TRINITY_DN2849_c0_g2:2259	si_a548	TRINITY_DN2849_c0_g2	2248	2270	2259	-27.20	-18.80	0.691176470588235	8.5	1-9,2270-2262;10-19,2259-2250	x-x,2261-2260[BULt];20-21,2249-2248[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	CUGAUGAAGAAACUUGGAUUGGA&UUCAAUCUA--UUUCUUUAUCUC	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN2849_c0_g2_2259_TPlot.pdf
TRINITY_DN2849_c0_g2:2874	si_a150	TRINITY_DN2849_c0_g2	2863	2883	2874	-29.90	-20.62	0.689632107023411	11	1-7,2883-2877;14-21,2870-2863	8-13,2876-2871[SIL]	((((((((......(((((((&)))))))......))))))))	GAUUGACCAGUUUUCAACAAC&GUUGUUGUUUUAAGGUCAAUC	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN2849_c0_g2_2874_TPlot.pdf
TRINITY_DN2849_c0_g2:3531	si_s823	TRINITY_DN2849_c0_g2	3520	3541	3531	-22.20	-14.50	0.653153153153153	8	1-3,3541-3539;6-21,3535-3520	4-5,3538-3536[AILt]	((((((((((((((((...(((&)))-..))))))))))))))))	AAUUGUUUUUUAUUGUAAUAGA&UCU-UAAUAAUGAAAAACAAUU	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN2849_c0_g2_3531_TPlot.pdf
TRINITY_DN2849_c2_g1:1460	si_s825	TRINITY_DN2849_c2_g1	1448	1469	1460	-21.30	-14.50	0.68075117370892	8.5	5-15,1465-1455;16-21,1453-1448	1-4,1469-1466[UP5];x-x,1454-1454[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	CAAGUUCGUUUUUCAUUAAACA&UUAAUAAUGAAAAAC-AAUUUG	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN2849_c2_g1_1460_TPlot.pdf
TRINITY_DN284_c0_g2:2354	si_s320	TRINITY_DN284_c0_g2	2343	2362	2354	-31.00	-20.72	0.668387096774194	9	1-9,2362-2354;14-20,2350-2344	10-13,2353-2351[AILq];21-21,2343-2343[UP3]	.(((((((...-(((((((((&)))))))))....))))))).	AAUGUUUGGUA-AAGAGGGAC&GUCCUUCUUGUUACAAACAUA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN284_c0_g2_2354_TPlot.pdf
TRINITY_DN284_c0_g3:1328	si_a472	TRINITY_DN284_c0_g3	1317	1337	1328	-21.50	-14.50	0.674418604651163	8.5	2-15,1336-1323	1-1,1337-1337[UP5];16-21,1322-1317[UP3]	......((((((((((((((.&.))))))))))))))......	UGAUUUGCAAUAAUUACAUGC&AUAUGUAAUUAUUGUUAUAUA	3	0.999969729732114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN284_c0_g3_1328_TPlot.pdf
TRINITY_DN284_c0_g3:1329	si_a471	TRINITY_DN284_c0_g3	1318	1338	1329	-21.10	-14.50	0.687203791469194	9.5	3-16,1336-1323	1-2,1338-1337[UP5];17-21,1322-1318[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAUUUGCAAUAAUUACAUGCC&AAUAUGUAAUUAUUGUUAUAU	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN284_c0_g3_1329_TPlot.pdf
TRINITY_DN284_c0_g3:1330	si_a470	TRINITY_DN284_c0_g3	1319	1339	1330	-21.30	-14.50	0.68075117370892	10.5	4-17,1336-1323	1-3,1339-1337[UP5];18-21,1322-1319[UP3]	....((((((((((((((...&...))))))))))))))....	AUUUGCAAUAAUUACAUGCCA&UAAUAUGUAAUUAUUGUUAUA	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN284_c0_g3_1330_TPlot.pdf
TRINITY_DN284_c0_g3:1331	si_a469	TRINITY_DN284_c0_g3	1320	1340	1331	-21.10	-14.50	0.687203791469194	11.5	5-18,1336-1323	1-4,1340-1337[UP5];19-21,1322-1320[UP3]	...((((((((((((((....&....))))))))))))))...	UUUGCAAUAAUUACAUGCCAG&AUAAUAUGUAAUUAUUGUUAU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN284_c0_g3_1331_TPlot.pdf
TRINITY_DN284_c0_g3:1334	si_a466	TRINITY_DN284_c0_g3	1323	1343	1334	-21.50	-14.50	0.674418604651163	14.5	8-21,1336-1323	1-7,1343-1337[UP5]	((((((((((((((.......&.......))))))))))))))	GCAAUAAUUACAUGCCAGGUG&UAUAUAAUAUGUAAUUAUUGU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN284_c0_g3_1334_TPlot.pdf
TRINITY_DN284_c0_g3:1843	si_a785	TRINITY_DN284_c0_g3	1832	1852	1843	-25.90	-18.80	0.725868725868726	7	1-3,1852-1850;5-18,1848-1835	4-4,1849-1849[SIL];19-21,1834-1832[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UCCAGUGGAAAAAUGGAUGAG&CUCUUCUAUUUUUCUAUUUUC	2	0.999596841779756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN284_c0_g3_1843_TPlot.pdf
TRINITY_DN284_c0_g3:1844	si_a784	TRINITY_DN284_c0_g3	1833	1853	1844	-24.70	-19.00	0.769230769230769	7	2-4,1852-1850;6-19,1848-1835	1-1,1853-1853[UP5];5-5,1849-1849[SIL];20-21,1834-1833[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	CCAGUGGAAAAAUGGAUGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN284_c0_g3_1844_TPlot.pdf
TRINITY_DN284_c0_g3:1845	si_a783	TRINITY_DN284_c0_g3	1834	1854	1845	-24.70	-19.00	0.769230769230769	8	3-5,1852-1850;7-20,1848-1835	1-2,1854-1853[UP5];6-6,1849-1849[SIL];21-21,1834-1834[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	CAGUGGAAAAAUGGAUGAGGA&AACUCUUCUAUUUUUCUAUUU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN284_c0_g3_1845_TPlot.pdf
TRINITY_DN284_c0_g3:1847	si_a781	TRINITY_DN284_c0_g3	1836	1857	1847	-27.40	-19.60	0.715328467153285	8	1-3,1857-1855;5-7,1852-1850;9-21,1848-1836	4-4,1854-1853[AILt];8-8,1849-1849[SIL]	(((((((((((((.(((..(((&)))-.))).)))))))))))))	GUGGAAAAAUGGAUGAGGAUGA&UCA-ACUCUUCUAUUUUUCUAU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN284_c0_g3_1847_TPlot.pdf
TRINITY_DN284_c0_g3:1848	si_a780	TRINITY_DN284_c0_g3	1837	1858	1848	-27.30	-19.20	0.703296703296703	7.5	1-4,1858-1855;6-8,1852-1850;10-21,1848-1837	5-5,1854-1853[AILt];9-9,1849-1849[SIL]	((((((((((((.(((..((((&))))-.))).))))))))))))	UGGAAAAAUGGAUGAGGAUGAA&UUCA-ACUCUUCUAUUUUUCUA	2	0.974564613511492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN284_c0_g3_1848_TPlot.pdf
TRINITY_DN284_c0_g3:1849	si_a779	TRINITY_DN284_c0_g3	1838	1859	1849	-27.00	-18.10	0.67037037037037	8	2-5,1858-1855;7-9,1852-1850;11-21,1848-1838	1-1,1859-1859[UP5];6-6,1854-1853[AILt];10-10,1849-1849[SIL]	(((((((((((.(((..((((.&.))))-.))).)))))))))))	GGAAAAAUGGAUGAGGAUGAAA&AUUCA-ACUCUUCUAUUUUUCU	2	0.999407020573315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN284_c0_g3_1849_TPlot.pdf
TRINITY_DN284_c0_g3:2255	si_a639	TRINITY_DN284_c0_g3	2242	2264	2255	-23.60	-15.40	0.652542372881356	9	1-11,2264-2254;13-19,2250-2244	12-12,2253-2251[AILt];20-21,2243-2242[UP3]	..(((((((...(((((((((((&)))))))))))--.)))))))..	UGAUAUUACCAACGAAAAAAUCG&CGAUUUUUUUG--AGUAAUAUAU	3	0.999999999281328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN284_c0_g3_2255_TPlot.pdf
TRINITY_DN284_c0_g3:5310	si_s76	TRINITY_DN284_c0_g3	5296	5319	5310	-23.60	-18.70	0.792372881355932	7	1-15,5319-5305;16-21,5301-5296	x-x,5304-5302[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	GAGAGGCCCGGGAAGAAGAAGAAU&AUUUUUUUUCUUUCC---UUUCUU	3	0.999999989169917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN284_c0_g3_5310_TPlot.pdf
TRINITY_DN284_c0_g3:5504	si_s682	TRINITY_DN284_c0_g3	5493	5521	5504	-26.60	-19.90	0.74812030075188	17	1-8,5521-5514;9-21,5505-5493	x-x,5513-5506[BULt]	(((((((((((((........((((((((&))))))))--------)))))))))))))	CUAAUUAGACUCAUGCCUGUUUGUUUCUG&UAGAAACA--------UGAGUUUAAUUAG	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s682_TRINITY_DN284_c0_g3_5504_TPlot.pdf
TRINITY_DN284_c0_g3:5505	si_s681	TRINITY_DN284_c0_g3	5494	5522	5505	-25.10	-17.50	0.697211155378486	18.5	2-9,5521-5514;10-21,5505-5494	1-1,5522-5522[UP5];x-x,5513-5506[BULt]	((((((((((((........((((((((.&.))))))))--------))))))))))))	UAAUUAGACUCAUGCCUGUUUGUUUCUGA&AUAGAAACA--------UGAGUUUAAUUA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN284_c0_g3_5505_TPlot.pdf
TRINITY_DN284_c3_g1:128	si_s75	TRINITY_DN284_c3_g1	117	137	128	-24.00	-18.80	0.783333333333333	8.5	3-11,135-127;13-21,125-117	1-2,137-136[UP5];12-12,126-126[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AGAGAGGAACGAAAGAGGAGA&UAUUUUUUUUCUUUCCUUUCU	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN284_c3_g1_128_TPlot.pdf
TRINITY_DN2851_c1_g1:312	si_a410	TRINITY_DN2851_c1_g1	301	321	312	-17.80	-14.50	0.814606741573034	6.5	4-21,318-301	1-3,321-319[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUAUUUGAAUAUAAAUAUGA&UUUUGUUUAUAUUUAAAUAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2851_c1_g1_312_TPlot.pdf
TRINITY_DN28528_c0_g1:667	si_s443	TRINITY_DN28528_c0_g1	656	676	667	-23.50	-15.90	0.676595744680851	7	2-4,675-673;6-10,671-667;12-21,665-656	1-1,676-676[UP5];5-5,672-672[SIL];11-11,666-666[SIL]	((((((((((.(((((.(((.&.))).))))).))))))))))	UUGUUGUUAUUUGUGACAUGG&ACAUAUUAUAUAUAACAACAA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN28528_c0_g1_667_TPlot.pdf
TRINITY_DN2854_c2_g1:1862	si_a833	TRINITY_DN2854_c2_g1	1848	1873	1862	-25.60	-16.90	0.66015625	7	1-5,1873-1869;6-19,1866-1853;20-21,1849-1848	x-x,1868-1867[BULt];x-x,1852-1850[BULt]	((...((((((((((((((..(((((&)))))--))))))))))))))---))	GCCUGAACUUCUAUUUUUUUCUUCUU&AAGAA--AAAAAAUAGAAGUU---GC	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN2854_c2_g1_1862_TPlot.pdf
TRINITY_DN2855_c0_g1:1050	si_s79	TRINITY_DN2855_c0_g1	1039	1059	1050	-26.20	-18.00	0.687022900763359	6	1-4,1059-1056;6-12,1054-1048;14-20,1046-1040	5-5,1055-1055[SIL];13-13,1047-1047[SIL];21-21,1039-1039[UP3]	.(((((((.(((((((.((((&)))).))))))).))))))).	UGGAAGAGCGGGAAGACAAAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2855_c0_g1_1050_TPlot.pdf
TRINITY_DN2855_c0_g1:2319	si_a142	TRINITY_DN2855_c0_g1	2308	2328	2319	-23.50	-15.50	0.659574468085106	10.5	3-15,2326-2314	1-2,2328-2327[UP5];16-21,2313-2308[UP3]	......(((((((((((((..&..)))))))))))))......	UACUAUCGACGACGAUUAACG&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999813589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2855_c0_g1_2319_TPlot.pdf
TRINITY_DN2855_c0_g1:2320	si_a141	TRINITY_DN2855_c0_g1	2309	2329	2320	-23.80	-15.50	0.651260504201681	11.5	4-16,2326-2314	1-3,2329-2327[UP5];17-21,2313-2309[UP3]	.....(((((((((((((...&...))))))))))))).....	ACUAUCGACGACGAUUAACGA&UAAUUAAUCGUUGUUGUUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2855_c0_g1_2320_TPlot.pdf
TRINITY_DN28564_c0_g2:159	si_a353	TRINITY_DN28564_c0_g2	148	165	159	-24.00	-15.60	0.65	8.5	1-6,165-160;10-21,159-148	7-9,x-x[BULq]	((((((((((((---((((((&))))))...))))))))))))	CGAUCGAAAUAG---UGGUAU&AUAUUAAUUCUAUUUUGAUCG	4	0.999961952797637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN28564_c0_g2_159_TPlot.pdf
TRINITY_DN2857_c0_g1:1108	si_s513	TRINITY_DN2857_c0_g1	1096	1117	1108	-24.90	-16.20	0.650602409638554	6	2-13,1116-1105;15-17,1103-1101;18-20,1099-1097	1-1,1117-1117[UP5];14-14,1104-1104[SIL];x-x,1100-1100[BULt];21-21,1096-1096[UP3]	.(((.(((.((((((((((((.&.)))))))))))).)))-))).	CUCGCAAUAAAGAAUGUAGGAA&AUUCUAUAUUCUUAAUU-CGAA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN2857_c0_g1_1108_TPlot.pdf
TRINITY_DN2857_c0_g1:284	si_a22	TRINITY_DN2857_c0_g1	273	293	284	-23.50	-15.70	0.668085106382979	8	1-16,293-278	17-21,277-273[UP3]	.....((((((((((((((((&)))))))))))))))).....	AACUCAACUAGAAAUGGAUAG&CUAUUUAUUUUUAGUUCUAAG	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN2857_c0_g1_284_TPlot.pdf
TRINITY_DN2857_c0_g1:958	si_a320	TRINITY_DN2857_c0_g1	947	967	958	-24.40	-17.20	0.704918032786885	9.5	2-16,966-952	1-1,967-967[UP5];17-21,951-947[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UACAUAAGAAGUCGUGGAUGG&UUAUCCAUGAUUUUUUUAUUC	2	0.989088653046503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN2857_c0_g1_958_TPlot.pdf
TRINITY_DN2857_c0_g1:965	si_a313	TRINITY_DN2857_c0_g1	954	977	965	-28.70	-19.50	0.679442508710801	12.5	2-8,976-970;9-21,966-954	1-1,977-977[UP5];x-x,969-967[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	GAAGUCGUGGAUGGAUGGUCUAAC&CUUGGAUU---UAUCCAUGAUUUU	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN2857_c0_g1_965_TPlot.pdf
TRINITY_DN28587_c0_g1:344	si_s602	TRINITY_DN28587_c0_g1	332	353	344	-28.10	-20.10	0.715302491103203	6	2-10,352-344;11-21,342-332	1-1,353-353[UP5];x-x,343-343[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	UUUGAGAAAGAUUUUGUUUGGG&UCCAAGCGAA-UCUUUUUUAAA	1	0.0137034102118545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN28587_c0_g1_344_TPlot.pdf
TRINITY_DN2858_c0_g1:1351	si_a683	TRINITY_DN2858_c0_g1	1340	1361	1351	-35.80	-24.20	0.675977653631285	8.5	3-8,1359-1354;9-11,1352-1350;13-21,1348-1340	1-2,1361-1360[UP5];x-x,1353-1353[BULt];12-12,1349-1349[SIL]	(((((((((.(((.((((((..&..))))))-))).)))))))))	UGUGUUCGGCAUCAGCGUGAUU&AUUCACGC-GGUUUCGAACACA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN2858_c0_g1_1351_TPlot.pdf
TRINITY_DN28590_c0_g1:228	si_s71	TRINITY_DN28590_c0_g1	217	240	228	-25.70	-16.92	0.658365758754864	14	2-8,239-233;11-21,227-217	1-1,240-240[UP5];9-10,232-228[AILt]	(((((((((((.....(((((((.&.)))))))---..)))))))))))	AGGAAAGAAAAUUAGCGAUGGAGC&CUUCUAUU---UUUUUUCUUUCCU	0	0.8447325008239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN28590_c0_g1_228_TPlot.pdf
TRINITY_DN2859_c0_g1:1229	si_s69	TRINITY_DN2859_c0_g1	1219	1238	1229	-23.40	-17.00	0.726495726495727	4.5	1-16,1238-1223;18-21,1222-1219	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	GAAA-AAAGAAAGUGGAGGUU&AACUUCUAUUUUUUUUCUUUC	4	0.999999999994503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2859_c0_g1_1229_TPlot.pdf
TRINITY_DN285_c0_g1:220	si_a58	TRINITY_DN285_c0_g1	209	229	220	-34.60	-23.10	0.667630057803468	7.5	1-8,229-222;10-16,220-214	9-9,221-221[SIL];17-21,213-209[UP3]	.....(((((((.((((((((&)))))))).))))))).....	UCUACGAGAAGCAAGUCGACU&AGUCGACUCGCUUCUUUCAAA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN285_c0_g1_220_TPlot.pdf
TRINITY_DN285_c0_g1:2293	si_a860	TRINITY_DN285_c0_g1	2281	2302	2293	-24.30	-16.00	0.65843621399177	8.5	5-17,2298-2286;18-21,2284-2281	1-4,2302-2299[UP5];x-x,2285-2285[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	AAUCAUUUAGUAAUUGGACUCC&GAAAUCCAAUUAUUAAA-GAUU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN285_c0_g1_2293_TPlot.pdf
TRINITY_DN285_c0_g1:230	si_a627	TRINITY_DN285_c0_g1	218	239	230	-29.50	-19.20	0.650847457627119	8.5	1-10,239-230;11-18,228-221	x-x,229-229[BULt];19-21,220-218[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	AGCAAGUCGACUGUAAUGUGCC&GGCGUAUUAU-GUCGAUUUUUU	2	0.999965705272606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN285_c0_g1_230_TPlot.pdf
TRINITY_DN28632_c0_g1:1222	si_s663	TRINITY_DN28632_c0_g1	1211	1231	1222	-34.80	-24.30	0.698275862068966	8	1-3,1231-1229;5-16,1227-1216	4-4,1228-1228[SIL];17-21,1215-1211[UP3]	.....((((((((((((.(((&))).)))))))))))).....	AAGUUUCAAUUCGAUCCGUCG&CGGGGGAUCGAAUUGAUUAUA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s663_TRINITY_DN28632_c0_g1_1222_TPlot.pdf
TRINITY_DN28632_c0_g1:1224	si_s661	TRINITY_DN28632_c0_g1	1213	1233	1224	-35.40	-24.40	0.689265536723164	9	3-5,1231-1229;7-18,1227-1216	1-2,1233-1232[UP5];6-6,1228-1228[SIL];19-21,1215-1213[UP3]	...((((((((((((.(((..&..))).))))))))))))...	GUUUCAAUUCGAUCCGUCGGA&AUCGGGGGAUCGAAUUGAUUA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN28632_c0_g1_1224_TPlot.pdf
TRINITY_DN28632_c0_g1:1226	si_s659	TRINITY_DN28632_c0_g1	1215	1235	1226	-36.70	-24.40	0.664850136239782	11	5-7,1231-1229;9-20,1227-1216	1-4,1235-1232[UP5];8-8,1228-1228[SIL];21-21,1215-1215[UP3]	.((((((((((((.(((....&....))).)))))))))))).	UUCAAUUCGAUCCGUCGGAGU&CAAUCGGGGGAUCGAAUUGAU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s659_TRINITY_DN28632_c0_g1_1226_TPlot.pdf
TRINITY_DN28632_c0_g1:1227	si_s658	TRINITY_DN28632_c0_g1	1216	1235	1227	-37.30	-24.30	0.651474530831099	8	1-2,1235-1234;5-8,1232-1229;10-21,1227-1216	3-4,1233-1233[AILq];9-9,1228-1228[SIL]	((((((((((((.((((.-((&))..)))).))))))))))))	UCAAUUCGAUCCGUCGGA-GU&ACAAUCGGGGGAUCGAAUUGA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s658_TRINITY_DN28632_c0_g1_1227_TPlot.pdf
TRINITY_DN28632_c0_g1:1229	si_a362	TRINITY_DN28632_c0_g1	1218	1237	1229	-28.00	-18.80	0.671428571428571	11	1-9,1237-1229;11-16,1228-1223	10-10,x-x[BULq];17-21,1222-1218[UP3]	.....((((((-(((((((((&))))))))).)))))).....	AAUUCGAUCCG-UCGGAGUGG&CUAUUUUGAUCGGAUCAAAAA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN28632_c0_g1_1229_TPlot.pdf
TRINITY_DN28632_c0_g1:1592	si_s899	TRINITY_DN28632_c0_g1	1581	1601	1592	-28.30	-21.90	0.773851590106007	7.5	2-18,1600-1584	1-1,1601-1601[UP5];19-21,1583-1581[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UGAUGGAAUUGAAGGGGGAGG&GCUUUCUCUUCAAUUUCAAUU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN28632_c0_g1_1592_TPlot.pdf
TRINITY_DN28632_c0_g1:1593	si_s898	TRINITY_DN28632_c0_g1	1582	1602	1593	-30.70	-21.90	0.713355048859935	8.5	3-19,1600-1584	1-2,1602-1601[UP5];20-21,1583-1582[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAUGGAAUUGAAGGGGGAGGA&GGCUUUCUCUUCAAUUUCAAU	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN28632_c0_g1_1593_TPlot.pdf
TRINITY_DN28632_c0_g1:1594	si_s897	TRINITY_DN28632_c0_g1	1583	1603	1594	-31.30	-21.90	0.699680511182109	9.5	4-20,1600-1584	1-3,1603-1601[UP5];21-21,1583-1583[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AUGGAAUUGAAGGGGGAGGAA&AGGCUUUCUCUUCAAUUUCAA	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN28632_c0_g1_1594_TPlot.pdf
TRINITY_DN28632_c0_g1:1596	si_s895	TRINITY_DN28632_c0_g1	1585	1605	1596	-31.10	-20.30	0.652733118971061	12.5	6-21,1600-1585	1-5,1605-1601[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAAUUGAAGGGGGAGGAAGU&AUAGGCUUUCUCUUCAAUUUC	4	0.999999889524339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN28632_c0_g1_1596_TPlot.pdf
TRINITY_DN28632_c0_g1:1598	si_s78	TRINITY_DN28632_c0_g1	1585	1607	1598	-26.20	-17.10	0.652671755725191	12	4-17,1604-1591;18-21,1588-1585	1-3,1607-1605[UP5];x-x,1590-1589[BULt]	((((..((((((((((((((...&...))))))))))))))--))))	GGAAUUGAAGGGGGAGGAAGUGA&UUUUUUUCUUUCCUUUC--UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN28632_c0_g1_1598_TPlot.pdf
TRINITY_DN28632_c0_g1:1600	si_s76	TRINITY_DN28632_c0_g1	1589	1609	1600	-23.60	-16.20	0.686440677966102	15	6-19,1604-1591	1-5,1609-1605[UP5];20-21,1590-1589[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGAAGGGGGAGGAAGUGACG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN28632_c0_g1_1600_TPlot.pdf
TRINITY_DN28632_c0_g1:2524	si_s76	TRINITY_DN28632_c0_g1	2514	2533	2524	-23.60	-15.40	0.652542372881356	7.5	2-14,2532-2520;16-20,2519-2515	1-1,2533-2533[UP5];15-15,x-x[BULq];21-21,2514-2514[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	CAGAGA-GAAGGAAGAAGAGC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN28632_c0_g1_2524_TPlot.pdf
TRINITY_DN28632_c0_g1:2642	si_s78	TRINITY_DN28632_c0_g1	2630	2651	2642	-26.20	-17.10	0.652671755725191	8	1-12,2651-2640;13-17,2638-2634	x-x,2639-2639[BULt];18-21,2633-2630[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	UAGUGAAAGAGAAGGAAGAAAA&UUUUUUUCUUUC-CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN28632_c0_g1_2642_TPlot.pdf
TRINITY_DN28632_c0_g1:2644	si_s76	TRINITY_DN28632_c0_g1	2632	2653	2644	-23.60	-18.00	0.76271186440678	6	2-14,2652-2640;15-19,2638-2634	1-1,2653-2653[UP5];x-x,2639-2639[BULt];20-21,2633-2632[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	GUGAAAGAGAAGGAAGAAAAAA&AUUUUUUUUCUUUC-CUUUCUU	3	0.999999999999897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN28632_c0_g1_2644_TPlot.pdf
TRINITY_DN28632_c0_g1:2645	si_s75	TRINITY_DN28632_c0_g1	2633	2654	2645	-24.00	-18.00	0.75	7	3-15,2652-2640;16-20,2638-2634	1-2,2654-2653[UP5];x-x,2639-2639[BULt];21-21,2633-2633[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UGAAAGAGAAGGAAGAAAAAAG&UAUUUUUUUUCUUUC-CUUUCU	3	0.999999999934068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN28632_c0_g1_2645_TPlot.pdf
TRINITY_DN28632_c0_g1:2646	si_s74	TRINITY_DN28632_c0_g1	2634	2655	2646	-25.00	-17.60	0.704	7.5	4-16,2652-2640;17-21,2638-2634	1-3,2655-2653[UP5];x-x,2639-2639[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAAAGAGAAGGAAGAAAAAAGA&CUAUUUUUUUUCUUUC-CUUUC	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN28632_c0_g1_2646_TPlot.pdf
TRINITY_DN28632_c0_g1:2647	si_s73	TRINITY_DN28632_c0_g1	2635	2655	2647	-24.00	-16.00	0.666666666666667	4.5	1-3,2655-2653;5-17,2652-2640;18-21,2638-2635	4-4,x-x[BULq];x-x,2639-2639[BULt]	((((.(((((((((((((-(((&))).)))))))))))))-))))	AAAGAGAAGGAAGAAAAA-AGA&UCUAUUUUUUUUCUUUC-CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN28632_c0_g1_2647_TPlot.pdf
TRINITY_DN28632_c0_g1:2732	si_s70	TRINITY_DN28632_c0_g1	2710	2741	2732	-25.80	-17.40	0.674418604651163	26.5	2-11,2740-2731;12-21,2719-2710	1-1,2741-2741[UP5];x-x,2730-2720[BULt]	((((((((((...........((((((((((.&.))))))))))-----------))))))))))	GGAAAGGAAAUGAGUCAAGCGGAGAUGGAAGA&ACUUCUAUUUU-----------UUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN28632_c0_g1_2732_TPlot.pdf
TRINITY_DN28632_c0_g1:3640	si_a324	TRINITY_DN28632_c0_g1	3629	3649	3640	-27.50	-18.50	0.672727272727273	8	1-7,3649-3643;9-13,3641-3637;15-20,3635-3630	8-8,3642-3642[SIL];14-14,3636-3636[SIL];21-21,3629-3629[UP3]	.((((((.(((((.(((((((&))))))).))))).)))))).	AGAGGAGGAGGAAUGUCAUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN28632_c0_g1_3640_TPlot.pdf
TRINITY_DN28632_c0_g1:3641	si_a323	TRINITY_DN28632_c0_g1	3630	3650	3641	-26.80	-18.50	0.690298507462687	7.5	2-8,3649-3643;10-14,3641-3637;16-21,3635-3630	1-1,3650-3650[UP5];9-9,3642-3642[SIL];15-15,3636-3636[SIL]	((((((.(((((.(((((((.&.))))))).))))).))))))	GAGGAGGAGGAAUGUCAUGGU&UCCAUGAUUUUUUUAUUCCUU	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN28632_c0_g1_3641_TPlot.pdf
TRINITY_DN28632_c0_g1:827	si_s801	TRINITY_DN28632_c0_g1	810	836	827	-28.20	-19.50	0.691489361702128	17	2-10,835-827;11-21,820-810	1-1,836-836[UP5];x-x,826-821[BULt]	(((((((((((......(((((((((.&.)))))))))------)))))))))))	AAGGUGGCGAGCUCUUCGAUGAGAUAA&GUAUUUUAUC------UUCGUUACCUU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN28632_c0_g1_827_TPlot.pdf
TRINITY_DN28632_c0_g1:959	si_a292	TRINITY_DN28632_c0_g1	948	970	959	-26.70	-17.64	0.660674157303371	14	1-9,970-962;14-20,955-949	10-13,961-956[AILt];21-21,948-948[UP3]	.(((((((......(((((((((&)))))))))--....))))))).	AGAAUCUUCUCCUCGAGUCCAAG&CUUGGAUUU--AAAAAAGAUUCG	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a292_TRINITY_DN28632_c0_g1_959_TPlot.pdf
TRINITY_DN2864_c0_g1:1395	si_s481	TRINITY_DN2864_c0_g1	1385	1404	1395	-23.00	-15.40	0.669565217391304	7	1-11,1404-1394;13-16,1393-1390;18-20,1388-1386	12-12,x-x[BULq];17-17,1389-1389[SIL];21-21,1385-1385[UP3]	.(((.((((-(((((((((((&))))))))))).)))).))).	GGUUCAAGU-AAUGUGGGAUC&GAUCCUAUAUUUAUUUAAAUA	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN2864_c0_g1_1395_TPlot.pdf
TRINITY_DN2864_c0_g1:5667	si_s79	TRINITY_DN2864_c0_g1	5650	5676	5667	-26.20	-17.40	0.66412213740458	9.5	1-10,5676-5667;11-17,5665-5659;18-21,5653-5650	x-x,5666-5666[BULt];x-x,5658-5654[BULt]	((((.....(((((((.((((((((((&))))))))))-)))))))-----))))	AAGAAGUGCAGAGAGGCAAAGGAGAAA&UUUUUUCUUU-CCUUUCU-----UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2864_c0_g1_5667_TPlot.pdf
TRINITY_DN2864_c0_g1:6779	si_a767	TRINITY_DN2864_c0_g1	6768	6788	6779	-30.10	-20.00	0.664451827242525	6	1-10,6788-6779;13-18,6776-6771;20-21,6769-6768	11-12,6778-6777[SIL];19-19,6770-6770[SIL]	((.((((((..((((((((((&))))))))))..)))))).))	GACUUGAAUAUAUCAAAGACC&GGUUUUUGAUUGAUUCAACUC	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN2864_c0_g1_6779_TPlot.pdf
TRINITY_DN2864_c0_g1:6858	si_a114	TRINITY_DN2864_c0_g1	6847	6868	6858	-27.90	-18.30	0.655913978494624	8.5	1-9,6868-6860;10-16,6858-6852	x-x,6859-6859[BULt];17-21,6851-6847[UP3]	.....(((((((.(((((((((&)))))))))-))))))).....	AAAUUGAACAAGUCUCGUGUUU&AAAUACGAG-CUUGUUUUAUAG	2	0.987946290639231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN2864_c0_g1_6858_TPlot.pdf
TRINITY_DN2864_c0_g1:6863	si_a110	TRINITY_DN2864_c0_g1	6851	6872	6863	-27.80	-20.80	0.748201438848921	6.5	3-13,6870-6860;14-20,6858-6852	1-2,6872-6871[UP5];x-x,6859-6859[BULt];21-21,6851-6851[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UGAACAAGUCUCGUGUUUUAAA&GAUAAAAUACGAG-CUUGUUUU	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN2864_c0_g1_6863_TPlot.pdf
TRINITY_DN2864_c0_g1:6864	si_a109	TRINITY_DN2864_c0_g1	6852	6877	6864	-28.50	-20.90	0.733333333333333	10.5	1-5,6877-6873;6-14,6868-6860;15-21,6858-6852	x-x,6872-6869[BULt];x-x,6859-6859[BULt]	(((((((.(((((((((....(((((&)))))----)))))))))-)))))))	GAACAAGUCUCGUGUUUUAAAUAUCU&AGAUA----AAAUACGAG-CUUGUUU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN2864_c0_g1_6864_TPlot.pdf
TRINITY_DN2864_c0_g1:6903	si_s199	TRINITY_DN2864_c0_g1	6892	6912	6903	-31.20	-22.60	0.724358974358974	7.5	2-8,6911-6905;10-16,6903-6897;18-21,6895-6892	1-1,6912-6912[UP5];9-9,6904-6904[SIL];17-17,6896-6896[SIL]	((((.(((((((.(((((((.&.))))))).))))))).))))	ACGAGUGGUGCGAUCCGAAAC&AUUUUGGAAUGUACCAGUUGU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN2864_c0_g1_6903_TPlot.pdf
TRINITY_DN2864_c0_g1:6924	si_a361	TRINITY_DN2864_c0_g1	6913	6934	6924	-29.00	-18.90	0.651724137931034	9	1-9,6934-6926;10-10,6924-6924;12-17,6922-6917	x-x,6925-6925[BULt];11-11,6923-6923[SIL];18-21,6916-6913[UP3]	....((((((.(.(((((((((&)))))))))-).))))))....	GAGAGAUCCGUUCCAGAAUAGA&UCUAUUUUG-AUCGGAUCAAAA	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN2864_c0_g1_6924_TPlot.pdf
TRINITY_DN2864_c0_g1:6926	si_a360	TRINITY_DN2864_c0_g1	6914	6935	6926	-29.10	-19.60	0.673539518900344	8	1-10,6935-6926;11-11,6924-6924;13-18,6922-6917	x-x,6925-6925[BULt];12-12,6923-6923[SIL];19-21,6916-6914[UP3]	...((((((.(.((((((((((&))))))))))-).))))))...	AGAGAUCCGUUCCAGAAUAGAA&UUCUAUUUUG-AUCGGAUCAAA	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN2864_c0_g1_6926_TPlot.pdf
TRINITY_DN2864_c0_g1:6927	si_a359	TRINITY_DN2864_c0_g1	6915	6936	6927	-29.20	-19.60	0.671232876712329	7	2-11,6935-6926;12-12,6924-6924;14-19,6922-6917	1-1,6936-6936[UP5];x-x,6925-6925[BULt];13-13,6923-6923[SIL];20-21,6916-6915[UP3]	..((((((.(.((((((((((.&.))))))))))-).))))))..	GAGAUCCGUUCCAGAAUAGAAC&AUUCUAUUUUG-AUCGGAUCAA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN2864_c0_g1_6927_TPlot.pdf
TRINITY_DN2864_c0_g1:6928	si_a358	TRINITY_DN2864_c0_g1	6916	6937	6928	-29.10	-19.60	0.673539518900344	8	3-12,6935-6926;13-13,6924-6924;15-20,6922-6917	1-2,6937-6936[UP5];x-x,6925-6925[BULt];14-14,6923-6923[SIL];21-21,6916-6916[UP3]	.((((((.(.((((((((((..&..))))))))))-).)))))).	AGAUCCGUUCCAGAAUAGAACA&AAUUCUAUUUUG-AUCGGAUCA	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN2864_c0_g1_6928_TPlot.pdf
TRINITY_DN28656_c0_g2:303	si_a409	TRINITY_DN28656_c0_g2	291	312	303	-19.50	-14.30	0.733333333333333	10	1-11,312-302;13-19,299-293	12-12,301-300[AILt];20-21,292-291[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	UGAUUUGGAGAAUAGACGAGAC&GUUUUGUUUAU-AUUUAAAUAA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN28656_c0_g2_303_TPlot.pdf
TRINITY_DN2865_c0_g2:667	si_a356	TRINITY_DN2865_c0_g2	655	676	667	-26.90	-17.60	0.654275092936803	5.5	1-15,676-662;16-20,660-656	x-x,661-661[BULt];21-21,655-655[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	UUUUGGCUCAAAAUGGAAUUGA&UUAAUUCUAUUUUGA-UCGGAU	2	0.997781799676397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2865_c0_g2_667_TPlot.pdf
TRINITY_DN2865_c0_g2:669	si_a354	TRINITY_DN2865_c0_g2	657	678	669	-26.20	-18.20	0.694656488549618	5	1-17,678-662;18-21,660-657	x-x,661-661[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	UUGGCUCAAAAUGGAAUUGAUG&UAUUAAUUCUAUUUUGA-UCGG	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN2865_c0_g2_669_TPlot.pdf
TRINITY_DN2865_c0_g2:671	si_a352	TRINITY_DN2865_c0_g2	660	680	671	-22.50	-17.40	0.773333333333333	8	3-19,678-662	1-2,680-679[UP5];20-21,661-660[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCUCAAAAUGGAAUUGAUGGA&AAUAUUAAUUCUAUUUUGAUC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN2865_c0_g2_671_TPlot.pdf
TRINITY_DN2865_c0_g2:672	si_a351	TRINITY_DN2865_c0_g2	661	681	672	-20.50	-17.40	0.848780487804878	8.5	4-20,678-662	1-3,681-679[UP5];21-21,661-661[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUCAAAAUGGAAUUGAUGGAG&AAAUAUUAAUUCUAUUUUGAU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN2865_c0_g2_672_TPlot.pdf
TRINITY_DN2865_c0_g2:673	si_a350	TRINITY_DN2865_c0_g2	662	682	673	-20.30	-17.30	0.852216748768473	9.5	5-21,678-662	1-4,682-679[UP5]	(((((((((((((((((....&....)))))))))))))))))	UCAAAAUGGAAUUGAUGGAGU&AAAAUAUUAAUUCUAUUUUGA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN2865_c0_g2_673_TPlot.pdf
TRINITY_DN2865_c0_g2:674	si_a349	TRINITY_DN2865_c0_g2	663	683	674	-21.30	-15.20	0.713615023474178	11.5	6-21,678-663	1-5,683-679[UP5]	((((((((((((((((.....&.....))))))))))))))))	CAAAAUGGAAUUGAUGGAGUU&GAAAAUAUUAAUUCUAUUUUG	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN2865_c0_g2_674_TPlot.pdf
TRINITY_DN2865_c0_g2:675	si_a348	TRINITY_DN2865_c0_g2	664	686	675	-21.10	-13.90	0.658767772511848	9.5	1-5,686-682;7-21,678-664	6-6,681-679[AILt]	(((((((((((((((...(((((&)))))--.)))))))))))))))	AAAAUGGAAUUGAUGGAGUUUUG&CGAAA--AUAUUAAUUCUAUUUU	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN2865_c0_g2_675_TPlot.pdf
TRINITY_DN2865_c0_g2:802	si_a268	TRINITY_DN2865_c0_g2	791	811	802	-38.20	-25.50	0.667539267015707	11	1-5,811-807;8-14,804-798	6-7,806-805[SIL];15-21,797-791[UP3]	.......(((((((..(((((&)))))..))))))).......	GGUACAAGUAGGCGGUUGCCC&GGGCAAACGCCUACGAAAAGA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a268_TRINITY_DN2865_c0_g2_802_TPlot.pdf
TRINITY_DN2865_c0_g2:803	si_a267	TRINITY_DN2865_c0_g2	792	812	803	-37.90	-25.60	0.675461741424802	11	2-6,811-807;9-15,804-798	1-1,812-812[UP5];7-8,806-805[SIL];16-21,797-792[UP3]	......(((((((..(((((.&.)))))..)))))))......	GUACAAGUAGGCGGUUGCCCA&AGGGCAAACGCCUACGAAAAG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a267_TRINITY_DN2865_c0_g2_803_TPlot.pdf
TRINITY_DN2865_c0_g2:804	si_a266	TRINITY_DN2865_c0_g2	793	813	804	-38.30	-25.60	0.668407310704961	12	3-7,811-807;10-16,804-798	1-2,813-812[UP5];8-9,806-805[SIL];17-21,797-793[UP3]	.....(((((((..(((((..&..)))))..))))))).....	UACAAGUAGGCGGUUGCCCAC&GAGGGCAAACGCCUACGAAAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN2865_c0_g2_804_TPlot.pdf
TRINITY_DN2866_c0_g1:619	si_a767	TRINITY_DN2866_c0_g1	603	628	619	-30.10	-22.70	0.754152823920266	12	1-11,628-618;12-17,613-608;18-21,606-603	x-x,617-614[BULt];x-x,607-607[BULt]	((((.((((((....(((((((((((&)))))))))))----))))))-))))	GAGUAUGAAUCUGAAAGUCAGAGACC&GGUUUUUGAUU----GAUUCA-ACUC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN2866_c0_g1_619_TPlot.pdf
TRINITY_DN2867_c0_g1:2392	si_s525	TRINITY_DN2867_c0_g1	2382	2401	2392	-24.00	-17.20	0.716666666666667	7	3-10,2399-2392;12-20,2391-2383	1-2,2401-2400[UP5];11-11,x-x[BULq];21-21,2382-2382[UP3]	.(((((((((-((((((((..&..)))))))).))))))))).	UUCGAAAGUG-UUUCGAAUGU&UAAUUCGAAAUCAUUUUUGAU	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN2867_c0_g1_2392_TPlot.pdf
TRINITY_DN2867_c0_g1:2393	si_s524	TRINITY_DN2867_c0_g1	2383	2402	2393	-23.90	-17.10	0.715481171548117	8	4-11,2399-2392;13-21,2391-2383	1-3,2402-2400[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	UCGAAAGUG-UUUCGAAUGUC&UUAAUUCGAAAUCAUUUUUGA	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN2867_c0_g1_2393_TPlot.pdf
TRINITY_DN2867_c0_g1:892	si_a847	TRINITY_DN2867_c0_g1	881	900	892	-31.20	-22.20	0.711538461538462	7	2-2,899-899;4-7,897-894;9-20,893-882	1-1,900-900[UP5];3-3,898-898[SIL];8-8,x-x[BULq];21-21,881-881[UP3]	.((((((((((((-((((.(.&.).)))).)))))))))))).	AGGAUUUCAGGUU-GCAAGUA&AAGUUGCUAACUUGAAAUCCA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN2867_c0_g1_892_TPlot.pdf
TRINITY_DN2867_c0_g1:919	si_a153	TRINITY_DN2867_c0_g1	908	929	919	-28.70	-18.70	0.651567944250871	8.5	1-3,929-927;5-8,925-922;9-12,920-917;14-21,915-908	4-4,926-926[SIL];x-x,921-921[BULt];13-13,916-916[SIL]	((((((((.((((.((((.(((&))).))))-)))).))))))))	AUAGGUUGUCCUUGGAGAGGAC&GUUGUUUU-AAGGUCAAUCUAU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN2867_c0_g1_919_TPlot.pdf
TRINITY_DN2868_c0_g1:1589	si_a638	TRINITY_DN2868_c0_g1	1578	1598	1589	-24.40	-16.00	0.655737704918033	11.5	3-15,1596-1584	1-2,1598-1597[UP5];16-21,1583-1578[UP3]	......(((((((((((((..&..)))))))))))))......	GAGGUGGCUCAGAAAAGUCUU&UCGAUUUUUUUGAGUAAUAUA	3	0.999999984721091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN2868_c0_g1_1589_TPlot.pdf
TRINITY_DN2868_c0_g1:1666	si_s366	TRINITY_DN2868_c0_g1	1654	1675	1666	-39.70	-26.68	0.672040302267003	9	1-6,1675-1670;10-12,1666-1664;13-21,1662-1654	7-9,1669-1667[SIL];x-x,1663-1663[BULt]	(((((((((.(((...((((((&))))))...)))-)))))))))	ACGCGAGCGUAUCUCGUCGAUC&GAUUGAACCGAU-CGCUCGCGU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s366_TRINITY_DN2868_c0_g1_1666_TPlot.pdf
TRINITY_DN2868_c0_g1:1982	si_s97	TRINITY_DN2868_c0_g1	1971	1992	1982	-36.30	-24.40	0.672176308539945	8	1-7,1992-1986;8-16,1984-1976;19-19,1973-1973	x-x,1985-1985[BULt];17-18,1975-1974[SIL];20-21,1972-1971[UP3]	..(..(((((((((.(((((((&)))))))-)))))))))..)..	GACGCAUCCGAAGCUGAGGAGG&CUUCUUC-GCUUCGGAUUGGAA	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN2868_c0_g1_1982_TPlot.pdf
TRINITY_DN2868_c0_g1:1983	si_s96	TRINITY_DN2868_c0_g1	1972	1993	1983	-37.20	-26.00	0.698924731182796	7	1-8,1993-1986;9-17,1984-1976;20-20,1973-1973	x-x,1985-1985[BULt];18-19,1975-1974[SIL];21-21,1972-1972[UP3]	.(..(((((((((.((((((((&))))))))-)))))))))..).	ACGCAUCCGAAGCUGAGGAGGA&UCUUCUUC-GCUUCGGAUUGGA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN2868_c0_g1_1983_TPlot.pdf
TRINITY_DN2868_c0_g1:1984	si_s95	TRINITY_DN2868_c0_g1	1973	1994	1984	-36.30	-26.90	0.741046831955923	6	1-9,1994-1986;10-18,1984-1976;21-21,1973-1973	x-x,1985-1985[BULt];19-20,1975-1974[SIL]	(..(((((((((.(((((((((&)))))))))-)))))))))..)	CGCAUCCGAAGCUGAGGAGGAA&UUCUUCUUC-GCUUCGGAUUGG	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN2868_c0_g1_1984_TPlot.pdf
TRINITY_DN2868_c0_g1:1986	si_s94	TRINITY_DN2868_c0_g1	1974	1995	1986	-35.50	-26.60	0.749295774647887	7	2-10,1994-1986;11-19,1984-1976	1-1,1995-1995[UP5];x-x,1985-1985[BULt];20-21,1975-1974[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	GCAUCCGAAGCUGAGGAGGAAA&CUUCUUCUUC-GCUUCGGAUUG	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN2868_c0_g1_1986_TPlot.pdf
TRINITY_DN2868_c0_g1:1987	si_s93	TRINITY_DN2868_c0_g1	1975	1996	1987	-34.80	-26.60	0.764367816091954	8	3-11,1994-1986;12-20,1984-1976	1-2,1996-1995[UP5];x-x,1985-1985[BULt];21-21,1975-1975[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	CAUCCGAAGCUGAGGAGGAAAG&UCUUCUUCUUC-GCUUCGGAUU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN2868_c0_g1_1987_TPlot.pdf
TRINITY_DN2868_c0_g1:1993	si_s84	TRINITY_DN2868_c0_g1	1979	2002	1993	-32.30	-21.00	0.65015479876161	11.5	5-17,1998-1986;18-21,1982-1979	1-4,2002-1999[UP5];x-x,1985-1983[BULt]	((((...(((((((((((((....&....)))))))))))))---))))	CGAAGCUGAGGAGGAAAGGACAUG&UCUUUCCUUUCUUCUUC---UUCG	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2868_c0_g1_1993_TPlot.pdf
TRINITY_DN2868_c0_g1:1995	si_s82	TRINITY_DN2868_c0_g1	1984	2004	1995	-28.90	-19.50	0.674740484429066	14	7-19,1998-1986	1-6,2004-1999[UP5];20-21,1985-1984[UP3]	..(((((((((((((......&......)))))))))))))..	CUGAGGAGGAAAGGACAUGCA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN2868_c0_g1_1995_TPlot.pdf
TRINITY_DN2868_c0_g1:1997	si_s80	TRINITY_DN2868_c0_g1	1986	2006	1997	-28.20	-19.10	0.677304964539007	16	9-21,1998-1986	1-8,2006-1999[UP5]	(((((((((((((........&........)))))))))))))	GAGGAGGAAAGGACAUGCAAG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2868_c0_g1_1997_TPlot.pdf
TRINITY_DN2868_c0_g1:3339	si_s85	TRINITY_DN2868_c0_g1	3328	3352	3339	-33.80	-22.80	0.674556213017752	12	1-8,3352-3345;9-15,3340-3334;17-21,3332-3328	x-x,3344-3341[BULt];16-16,3333-3333[SIL]	(((((.(((((((....((((((((&))))))))----))))))).)))))	GUGAAAGAGAAGACGCAGAGGAGAG&CUUUCCUU----UCUUCUUCUUCGC	3	0.999999999999936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2868_c0_g1_3339_TPlot.pdf
TRINITY_DN2868_c0_g1:3340	si_s84	TRINITY_DN2868_c0_g1	3329	3353	3340	-32.30	-21.20	0.656346749226006	12	1-9,3353-3345;10-16,3340-3334;18-21,3332-3329	x-x,3344-3341[BULt];17-17,3333-3333[SIL]	((((.(((((((....(((((((((&)))))))))----))))))).))))	UGAAAGAGAAGACGCAGAGGAGAGA&UCUUUCCUU----UCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN2868_c0_g1_3340_TPlot.pdf
TRINITY_DN2868_c0_g1:3351	si_s77	TRINITY_DN2868_c0_g1	3336	3360	3351	-25.50	-18.60	0.729411764705882	13.5	5-16,3356-3345;17-21,3340-3336	1-4,3360-3357[UP5];x-x,3344-3341[BULt]	(((((....((((((((((((....&....))))))))))))----)))))	GAAGACGCAGAGGAGAGAGAACGAU&UUUUUUUUCUUUCCUU----UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2868_c0_g1_3351_TPlot.pdf
TRINITY_DN286_c0_g1:2751	si_a228	TRINITY_DN286_c0_g1	2740	2760	2751	-27.10	-21.90	0.808118081180812	4	1-18,2760-2743	19-21,2742-2740[UP3]	...((((((((((((((((((&))))))))))))))))))...	CUCUUGAUUAUAGAAAUAUGA&UCAUGUUUCUAUAAUCAAUUC	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN286_c0_g1_2751_TPlot.pdf
TRINITY_DN286_c0_g1:2754	si_a225	TRINITY_DN286_c0_g1	2743	2763	2754	-27.50	-22.00	0.8	6	4-21,2760-2743	1-3,2763-2761[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUGAUUAUAGAAAUAUGAAUG&AACUCAUGUUUCUAUAAUCAA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN286_c0_g1_2754_TPlot.pdf
TRINITY_DN286_c0_g1:2755	si_a224	TRINITY_DN286_c0_g1	2744	2764	2755	-27.40	-21.10	0.77007299270073	8	5-21,2760-2744	1-4,2764-2761[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGAUUAUAGAAAUAUGAAUGG&AAACUCAUGUUUCUAUAAUCA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN286_c0_g1_2755_TPlot.pdf
TRINITY_DN286_c0_g1:2757	si_a222	TRINITY_DN286_c0_g1	2746	2766	2757	-25.20	-16.60	0.658730158730159	12	7-21,2760-2746	1-6,2766-2761[UP5]	(((((((((((((((......&......)))))))))))))))	AUUAUAGAAAUAUGAAUGGAU&UUAAACUCAUGUUUCUAUAAU	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN286_c0_g1_2757_TPlot.pdf
TRINITY_DN286_c0_g1:3076	si_a68	TRINITY_DN286_c0_g1	3065	3086	3076	-25.40	-18.40	0.724409448818898	6	1-6,3086-3081;7-10,3079-3076;12-20,3074-3066	x-x,3080-3080[BULt];11-11,3075-3075[SIL];21-21,3065-3065[UP3]	.(((((((((.((((.((((((&))))))-)))).))))))))).	GGAAAAACAAAUUGAUAAGGAG&CUUCUU-UCAAAUUGUUUUUCA	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN286_c0_g1_3076_TPlot.pdf
TRINITY_DN286_c0_g1:771	si_a815	TRINITY_DN286_c0_g1	760	780	771	-33.80	-24.20	0.715976331360947	7	3-17,778-764	1-2,780-779[UP5];18-21,763-760[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUAACCUUUCUUCUUCUUCUU&GCGAAGAAGAAGAAAGGAAAG	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a815_TRINITY_DN286_c0_g1_771_TPlot.pdf
TRINITY_DN286_c0_g1:936	si_a373	TRINITY_DN286_c0_g1	925	949	936	-28.00	-18.68	0.667142857142857	13.5	1-5,949-945;7-18,939-928	6-6,944-940[AILt];19-21,927-925[UP3]	...((((((((((((.....(((((&)))))----.))))))))))))...	UGACGAGAUCAUUUUCAACAGAUCC&GGAUC----AAAAAUGAUUUCGAAU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN286_c0_g1_936_TPlot.pdf
TRINITY_DN286_c1_g2:2008	si_a192	TRINITY_DN286_c1_g2	1998	2017	2008	-31.90	-21.50	0.673981191222571	9	2-13,2016-2005;15-16,2004-2003	1-1,2017-2017[UP5];14-14,x-x[BULq];17-21,2002-1998[UP3]	.....((-((((((((((((.&.)))))))))))).)).....	UACAGAG-GAGCAGGGAGAGU&UCUUUCCCUGUUCACUAAUAA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN286_c1_g2_2008_TPlot.pdf
TRINITY_DN286_c1_g2:2013	si_a187	TRINITY_DN286_c1_g2	2003	2022	2013	-32.00	-21.10	0.659375	13.5	7-18,2016-2005;20-21,2004-2003	1-6,2022-2017[UP5];19-19,x-x[BULq]	((-((((((((((((......&......)))))))))))).))	AG-GAGCAGGGAGAGUUUUCG&UAAUAUCUUUCCCUGUUCACU	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN286_c1_g2_2013_TPlot.pdf
TRINITY_DN286_c1_g2:2153	si_s302	TRINITY_DN286_c1_g2	2142	2164	2153	-32.30	-22.20	0.687306501547988	7	1-7,2164-2158;8-12,2155-2151;14-21,2149-2142	x-x,2157-2156[BULt];13-13,2150-2150[SIL]	((((((((.(((((..(((((((&)))))))--))))).))))))))	GAUGGAAUAUUCGCCGGAUUCCA&UGGAAUU--GCGAAAAUUCUGUC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s302_TRINITY_DN286_c1_g2_2153_TPlot.pdf
TRINITY_DN286_c1_g2:2241	si_s629	TRINITY_DN286_c1_g2	2231	2250	2241	-34.60	-24.40	0.705202312138728	7	1-2,2250-2249;5-16,2246-2235;18-21,2234-2231	3-4,2248-2247[SIL];17-17,x-x[BULq]	((((-((((((((((((..((&))..)))))))))))).))))	CAAA-GCCUGCGAAGAGUGCG&CGAUCUUUUCGUAGGCGUUUG	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN286_c1_g2_2241_TPlot.pdf
TRINITY_DN286_c1_g2:2242	si_s628	TRINITY_DN286_c1_g2	2231	2251	2242	-35.40	-27.00	0.76271186440678	9.5	1-3,2251-2249;6-17,2246-2235	4-5,2248-2247[SIL];18-21,2234-2231[UP3]	....((((((((((((..(((&)))..))))))))))))....	CAAAGCCUGCGAAGAGUGCGC&GCGAUCUUUUCGUAGGCGUUU	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN286_c1_g2_2242_TPlot.pdf
TRINITY_DN286_c1_g2:2243	si_s627	TRINITY_DN286_c1_g2	2232	2252	2243	-36.10	-28.10	0.778393351800554	8.5	1-4,2252-2249;7-18,2246-2235	5-6,2248-2247[SIL];19-21,2234-2232[UP3]	...((((((((((((..((((&))))..))))))))))))...	AAAGCCUGCGAAGAGUGCGCU&AGCGAUCUUUUCGUAGGCGUU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN286_c1_g2_2243_TPlot.pdf
TRINITY_DN286_c1_g2:2244	si_s626	TRINITY_DN286_c1_g2	2233	2253	2244	-36.10	-28.30	0.78393351800554	8.5	2-5,2252-2249;8-19,2246-2235	1-1,2253-2253[UP5];6-7,2248-2247[SIL];20-21,2234-2233[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	AAGCCUGCGAAGAGUGCGCUC&AAGCGAUCUUUUCGUAGGCGU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN286_c1_g2_2244_TPlot.pdf
TRINITY_DN286_c1_g2:2245	si_s625	TRINITY_DN286_c1_g2	2234	2254	2245	-37.00	-28.30	0.764864864864865	9.5	3-6,2252-2249;9-20,2246-2235	1-2,2254-2253[UP5];7-8,2248-2247[SIL];21-21,2234-2234[UP3]	.((((((((((((..((((..&..))))..)))))))))))).	AGCCUGCGAAGAGUGCGCUCU&CAAGCGAUCUUUUCGUAGGCG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN286_c1_g2_2245_TPlot.pdf
TRINITY_DN286_c1_g2:2246	si_s624	TRINITY_DN286_c1_g2	2235	2256	2246	-37.90	-27.90	0.736147757255937	8.5	2-3,2255-2254;4-7,2252-2249;10-21,2246-2235	1-1,2256-2256[UP5];x-x,2253-2253[BULt];8-9,2248-2247[SIL]	((((((((((((..((((.((.&.))-))))..))))))))))))	GCCUGCGAAGAGUGCGCUCUGU&CCA-AGCGAUCUUUUCGUAGGC	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN286_c1_g2_2246_TPlot.pdf
TRINITY_DN286_c1_g2:2247	si_s623	TRINITY_DN286_c1_g2	2236	2257	2247	-36.40	-24.60	0.675824175824176	10	3-4,2255-2254;5-8,2252-2249;11-21,2246-2236	1-2,2257-2256[UP5];x-x,2253-2253[BULt];9-10,2248-2247[SIL]	(((((((((((..((((.((..&..))-))))..)))))))))))	CCUGCGAAGAGUGCGCUCUGUU&UCCA-AGCGAUCUUUUCGUAGG	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN286_c1_g2_2247_TPlot.pdf
TRINITY_DN286_c1_g2:2499	si_a639	TRINITY_DN286_c1_g2	2488	2508	2499	-23.60	-17.70	0.75	10.5	1-14,2508-2495	15-21,2494-2488[UP3]	.......((((((((((((((&)))))))))))))).......	UGCCGAGGCUCGGAAGAAUCG&CGAUUUUUUUGAGUAAUAUAU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN286_c1_g2_2499_TPlot.pdf
TRINITY_DN286_c1_g2:2501	si_a637	TRINITY_DN286_c1_g2	2490	2510	2501	-25.80	-21.10	0.817829457364341	9.5	1-16,2510-2495	17-21,2494-2490[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCGAGGCUCGGAAGAAUCGGC&GUCGAUUUUUUUGAGUAAUAU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN286_c1_g2_2501_TPlot.pdf
TRINITY_DN286_c1_g2:2502	si_a636	TRINITY_DN286_c1_g2	2491	2511	2502	-26.30	-21.10	0.802281368821293	9	2-17,2510-2495	1-1,2511-2511[UP5];18-21,2494-2491[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGAGGCUCGGAAGAAUCGGCC&UGUCGAUUUUUUUGAGUAAUA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN286_c1_g2_2502_TPlot.pdf
TRINITY_DN286_c1_g2:2503	si_a635	TRINITY_DN286_c1_g2	2492	2512	2503	-26.10	-21.10	0.808429118773946	9.5	3-18,2510-2495	1-2,2512-2511[UP5];19-21,2494-2492[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAGGCUCGGAAGAAUCGGCCC&AUGUCGAUUUUUUUGAGUAAU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN286_c1_g2_2503_TPlot.pdf
TRINITY_DN286_c1_g2:2504	si_a634	TRINITY_DN286_c1_g2	2493	2513	2504	-26.40	-21.10	0.799242424242424	10.5	4-19,2510-2495	1-3,2513-2511[UP5];20-21,2494-2493[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGGCUCGGAAGAAUCGGCCCC&UAUGUCGAUUUUUUUGAGUAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN286_c1_g2_2504_TPlot.pdf
TRINITY_DN286_c1_g2:2505	si_a633	TRINITY_DN286_c1_g2	2494	2514	2505	-26.40	-21.10	0.799242424242424	11.5	5-20,2510-2495	1-4,2514-2511[UP5];21-21,2494-2494[UP3]	.((((((((((((((((....&....)))))))))))))))).	GGCUCGGAAGAAUCGGCCCCC&UUAUGUCGAUUUUUUUGAGUA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN286_c1_g2_2505_TPlot.pdf
TRINITY_DN286_c1_g2:2506	si_a632	TRINITY_DN286_c1_g2	2495	2515	2506	-26.10	-20.70	0.793103448275862	12	6-21,2510-2495	1-5,2515-2511[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUCGGAAGAAUCGGCCCCCC&AUUAUGUCGAUUUUUUUGAGU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN286_c1_g2_2506_TPlot.pdf
TRINITY_DN286_c1_g2:2507	si_a631	TRINITY_DN286_c1_g2	2496	2516	2507	-25.70	-19.10	0.743190661478599	13.5	7-21,2510-2496	1-6,2516-2511[UP5]	(((((((((((((((......&......)))))))))))))))	CUCGGAAGAAUCGGCCCCCCC&UAUUAUGUCGAUUUUUUUGAG	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN286_c1_g2_2507_TPlot.pdf
TRINITY_DN286_c1_g2:2564	si_s94	TRINITY_DN286_c1_g2	2552	2573	2564	-35.50	-23.70	0.667605633802817	8	1-10,2573-2564;12-17,2561-2556	11-11,2563-2562[AILt];18-21,2555-2552[UP3]	....((((((..((((((((((&))))))))))-.))))))....	GCCACCGAAGAAGAAGAAGAAG&CUUCUUCUUC-GCUUCGGAUUG	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN286_c1_g2_2564_TPlot.pdf
TRINITY_DN286_c1_g2:2565	si_s93	TRINITY_DN286_c1_g2	2553	2574	2565	-34.80	-25.30	0.727011494252874	7	1-11,2574-2564;13-18,2561-2556	12-12,2563-2562[AILt];19-21,2555-2553[UP3]	...((((((..(((((((((((&)))))))))))-.))))))...	CCACCGAAGAAGAAGAAGAAGA&UCUUCUUCUUC-GCUUCGGAUU	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN286_c1_g2_2565_TPlot.pdf
TRINITY_DN286_c1_g2:2566	si_s92	TRINITY_DN286_c1_g2	2554	2575	2566	-34.90	-26.20	0.750716332378224	5	1-12,2575-2564;14-19,2561-2556	13-13,2563-2562[AILt];20-21,2555-2554[UP3]	..((((((..((((((((((((&))))))))))))-.))))))..	CACCGAAGAAGAAGAAGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN286_c1_g2_2566_TPlot.pdf
TRINITY_DN286_c1_g2:2567	si_s91	TRINITY_DN286_c1_g2	2555	2576	2567	-34.70	-26.90	0.77521613832853	3	1-13,2576-2564;15-20,2561-2556	14-14,2563-2562[AILt];21-21,2555-2555[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	ACCGAAGAAGAAGAAGAAGAAA&UUUCUUCUUCUUC-GCUUCGGA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN286_c1_g2_2567_TPlot.pdf
TRINITY_DN286_c1_g2:2568	si_s90	TRINITY_DN286_c1_g2	2556	2577	2568	-35.30	-27.10	0.767705382436261	3	2-14,2576-2564;16-21,2561-2556	1-1,2577-2577[UP5];15-15,2563-2562[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	CCGAAGAAGAAGAAGAAGAAAU&CUUUCUUCUUCUUC-GCUUCGG	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN286_c1_g2_2568_TPlot.pdf
TRINITY_DN286_c1_g2:2569	si_s89	TRINITY_DN286_c1_g2	2557	2578	2569	-35.30	-23.40	0.662889518413598	5	3-15,2576-2564;17-21,2561-2557	1-2,2578-2577[UP5];16-16,2563-2562[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	CGAAGAAGAAGAAGAAGAAAUC&CCUUUCUUCUUCUUC-GCUUCG	2	0.999999998935337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN286_c1_g2_2569_TPlot.pdf
TRINITY_DN286_c1_g2:2638	si_a133	TRINITY_DN286_c1_g2	2626	2647	2638	-28.10	-19.20	0.683274021352313	8.5	2-10,2646-2638;12-13,2635-2634;16-21,2631-2626	1-1,2647-2647[UP5];11-11,2637-2636[AILt];14-15,2633-2632[SIL]	((((((..((..(((((((((.&.)))))))))-.))..))))))	CAACGAGCGAGCUGCUAUUGCC&AGCAAUAGUA-AUUAAUCGUUG	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN286_c1_g2_2638_TPlot.pdf
TRINITY_DN286_c1_g2:2671	si_s77	TRINITY_DN286_c1_g2	2660	2680	2671	-25.50	-20.60	0.807843137254902	3.5	1-13,2680-2668;15-21,2666-2660	14-14,2667-2667[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAAGAAGAGAAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.997966876744423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN286_c1_g2_2671_TPlot.pdf
TRINITY_DN286_c1_g2:2672	si_s76	TRINITY_DN286_c1_g2	2661	2681	2672	-23.60	-17.30	0.733050847457627	4.5	2-14,2680-2668;16-21,2666-2661	1-1,2681-2681[UP5];15-15,2667-2667[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAAGAGAAAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN286_c1_g2_2672_TPlot.pdf
TRINITY_DN286_c1_g2:2705	si_a66	TRINITY_DN286_c1_g2	2693	2715	2705	-26.70	-18.60	0.696629213483146	11	1-5,2715-2711;6-10,2709-2705;13-21,2701-2693	x-x,2710-2710[BULt];11-12,2704-2702[AILt]	(((((((((...(((((.(((((&)))))-)))))-..)))))))))	GAAGGCGAUGGGGAAGGCAAGCG&CGCUU-CUUUC-AAAUUGUUUUU	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN286_c1_g2_2705_TPlot.pdf
TRINITY_DN286_c1_g2:2707	si_a64	TRINITY_DN286_c1_g2	2695	2717	2707	-29.40	-20.20	0.687074829931973	9.5	1-7,2717-2711;8-12,2709-2705;15-21,2701-2695	x-x,2710-2710[BULt];13-14,2704-2702[AILt]	(((((((...(((((.(((((((&)))))))-)))))-..)))))))	AGGCGAUGGGGAAGGCAAGCGGG&CUCGCUU-CUUUC-AAAUUGUUU	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN286_c1_g2_2707_TPlot.pdf
TRINITY_DN286_c1_g2:2765	si_a637	TRINITY_DN286_c1_g2	2754	2774	2765	-25.80	-18.90	0.732558139534884	10	1-16,2774-2759	17-21,2758-2754[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAGAGGCUUGGAAGAGUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN286_c1_g2_2765_TPlot.pdf
TRINITY_DN286_c1_g2:2766	si_a636	TRINITY_DN286_c1_g2	2755	2775	2766	-26.30	-18.90	0.718631178707224	9.5	2-17,2774-2759	1-1,2775-2775[UP5];18-21,2758-2755[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGAGGCUUGGAAGAGUCGACC&UGUCGAUUUUUUUGAGUAAUA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN286_c1_g2_2766_TPlot.pdf
TRINITY_DN286_c1_g2:2768	si_a634	TRINITY_DN286_c1_g2	2757	2777	2768	-26.40	-18.90	0.715909090909091	11	4-19,2774-2759	1-3,2777-2775[UP5];20-21,2758-2757[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGGCUUGGAAGAGUCGACCCC&UAUGUCGAUUUUUUUGAGUAA	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN286_c1_g2_2768_TPlot.pdf
TRINITY_DN286_c1_g2:2769	si_a633	TRINITY_DN286_c1_g2	2758	2778	2769	-26.40	-18.90	0.715909090909091	12	5-20,2774-2759	1-4,2778-2775[UP5];21-21,2758-2758[UP3]	.((((((((((((((((....&....)))))))))))))))).	GGCUUGGAAGAGUCGACCCCC&UUAUGUCGAUUUUUUUGAGUA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN286_c1_g2_2769_TPlot.pdf
TRINITY_DN286_c1_g2:2770	si_a632	TRINITY_DN286_c1_g2	2759	2779	2770	-26.10	-18.50	0.708812260536398	12.5	6-21,2774-2759	1-5,2779-2775[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUUGGAAGAGUCGACCCCCC&AUUAUGUCGAUUUUUUUGAGU	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN286_c1_g2_2770_TPlot.pdf
TRINITY_DN286_c1_g2:2800	si_a133	TRINITY_DN286_c1_g2	2788	2809	2800	-28.10	-19.20	0.683274021352313	9.5	2-10,2808-2800;12-13,2797-2796;16-21,2793-2788	1-1,2809-2809[UP5];11-11,2799-2798[AILt];14-15,2795-2794[SIL]	((((((..((..(((((((((.&.)))))))))-.))..))))))	CAACGAGCGAGCUGCUGUUGCC&AGCAAUAGUA-AUUAAUCGUUG	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN286_c1_g2_2800_TPlot.pdf
TRINITY_DN286_c1_g2:2856	si_s83	TRINITY_DN286_c1_g2	2845	2865	2856	-30.90	-21.80	0.705501618122977	6	1-6,2865-2860;9-21,2857-2845	7-8,2859-2858[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAAGAAGAAGAAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN286_c1_g2_2856_TPlot.pdf
TRINITY_DN286_c1_g2:2860	si_s82	TRINITY_DN286_c1_g2	2849	2869	2860	-28.90	-19.00	0.657439446366782	6.5	1-7,2869-2863;10-21,2860-2849	8-9,2862-2861[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAAGAAGAAGAAGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN286_c1_g2_2860_TPlot.pdf
TRINITY_DN286_c1_g2:2861	si_s69	TRINITY_DN286_c1_g2	2850	2871	2861	-23.40	-16.60	0.70940170940171	8	2-7,2870-2865;9-20,2862-2851	1-1,2871-2871[UP5];8-8,2864-2863[AILt];21-21,2850-2850[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	AGAAGAAGAAGAAGAAGAAGUC&AACUUCU-AUUUUUUUUCUUUC	2	0.999999999311305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN286_c1_g2_2861_TPlot.pdf
TRINITY_DN286_c1_g2:2862	si_s68	TRINITY_DN286_c1_g2	2851	2872	2862	-23.10	-16.40	0.70995670995671	9	3-8,2870-2865;10-21,2862-2851	1-2,2872-2871[UP5];9-9,2864-2863[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GAAGAAGAAGAAGAAGAAGUCA&CAACUUCU-AUUUUUUUUCUUU	2	0.999996115805695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN286_c1_g2_2862_TPlot.pdf
TRINITY_DN286_c1_g2:2929	si_a638	TRINITY_DN286_c1_g2	2918	2938	2929	-24.40	-16.00	0.655737704918033	10.5	1-15,2938-2924	16-21,2923-2918[UP3]	......(((((((((((((((&)))))))))))))))......	GGAUAGGCUUGGAAGAAUCGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999999989055347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN286_c1_g2_2929_TPlot.pdf
TRINITY_DN286_c1_g2:2930	si_a637	TRINITY_DN286_c1_g2	2919	2939	2930	-25.80	-18.90	0.732558139534884	9	1-16,2939-2924	17-21,2923-2919[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUAGGCUUGGAAGAAUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN286_c1_g2_2930_TPlot.pdf
TRINITY_DN286_c1_g2:2931	si_a636	TRINITY_DN286_c1_g2	2920	2940	2931	-26.30	-18.90	0.718631178707224	8.5	2-17,2939-2924	1-1,2940-2940[UP5];18-21,2923-2920[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUAGGCUUGGAAGAAUCGACC&UGUCGAUUUUUUUGAGUAAUA	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN286_c1_g2_2931_TPlot.pdf
TRINITY_DN286_c1_g2:2932	si_a635	TRINITY_DN286_c1_g2	2921	2941	2932	-26.10	-18.90	0.724137931034483	9	3-18,2939-2924	1-2,2941-2940[UP5];19-21,2923-2921[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAGGCUUGGAAGAAUCGACCC&AUGUCGAUUUUUUUGAGUAAU	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN286_c1_g2_2932_TPlot.pdf
TRINITY_DN286_c1_g2:2933	si_a634	TRINITY_DN286_c1_g2	2922	2942	2933	-26.40	-18.90	0.715909090909091	10	4-19,2939-2924	1-3,2942-2940[UP5];20-21,2923-2922[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGGCUUGGAAGAAUCGACCCC&UAUGUCGAUUUUUUUGAGUAA	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN286_c1_g2_2933_TPlot.pdf
TRINITY_DN286_c1_g2:2934	si_a633	TRINITY_DN286_c1_g2	2923	2943	2934	-26.40	-18.90	0.715909090909091	11	5-20,2939-2924	1-4,2943-2940[UP5];21-21,2923-2923[UP3]	.((((((((((((((((....&....)))))))))))))))).	GGCUUGGAAGAAUCGACCCCC&UUAUGUCGAUUUUUUUGAGUA	2	0.983951203433408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN286_c1_g2_2934_TPlot.pdf
TRINITY_DN286_c1_g2:2935	si_a632	TRINITY_DN286_c1_g2	2924	2944	2935	-26.10	-18.50	0.708812260536398	11.5	6-21,2939-2924	1-5,2944-2940[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUUGGAAGAAUCGACCCCCC&AUUAUGUCGAUUUUUUUGAGU	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN286_c1_g2_2935_TPlot.pdf
TRINITY_DN286_c1_g2:2988	si_a499	TRINITY_DN286_c1_g2	2975	2998	2988	-35.20	-23.00	0.653409090909091	13	1-3,2998-2996;5-8,2994-2991;9-12,2989-2986;13-21,2983-2975	4-4,2995-2995[SIL];x-x,2990-2990[BULt];x-x,2985-2984[BULt]	(((((((((..((((.((((.(((&))).))))-))))--)))))))))	CCGGGGAAGCUGCGACAGAGGGGC&GUCGUUUU-UCGU--CUUCCUUGG	2	0.999999987484145	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN286_c1_g2_2988_TPlot.pdf
TRINITY_DN286_c1_g2:3071	si_s77	TRINITY_DN286_c1_g2	3060	3080	3071	-25.50	-20.60	0.807843137254902	3.5	1-13,3080-3068;15-21,3066-3060	14-14,3067-3067[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAAGAAGAGAAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.998248943405107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN286_c1_g2_3071_TPlot.pdf
TRINITY_DN286_c1_g2:3072	si_s76	TRINITY_DN286_c1_g2	3061	3081	3072	-23.60	-17.30	0.733050847457627	4.5	2-14,3080-3068;16-21,3066-3061	1-1,3081-3081[UP5];15-15,3067-3067[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAAGAGAAAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN286_c1_g2_3072_TPlot.pdf
TRINITY_DN286_c1_g2:3073	si_s75	TRINITY_DN286_c1_g2	3062	3082	3073	-24.00	-16.40	0.683333333333333	6.5	3-15,3080-3068;17-21,3066-3062	1-2,3082-3081[UP5];16-16,3067-3067[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAAGAGAAAGAAGAAGAAAU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN286_c1_g2_3073_TPlot.pdf
TRINITY_DN286_c1_g2:3107	si_a64	TRINITY_DN286_c1_g2	3095	3117	3107	-29.40	-20.20	0.687074829931973	9.5	1-7,3117-3111;8-12,3109-3105;15-21,3101-3095	x-x,3110-3110[BULt];13-14,3104-3102[AILt]	(((((((...(((((.(((((((&)))))))-)))))-..)))))))	AGGCGAUGGGGAAGGCAAGCGGG&CUCGCUU-CUUUC-AAAUUGUUU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN286_c1_g2_3107_TPlot.pdf
TRINITY_DN286_c1_g2:3165	si_a637	TRINITY_DN286_c1_g2	3154	3174	3165	-25.80	-18.90	0.732558139534884	9	1-16,3174-3159	17-21,3158-3154[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUAGGCUUGGAAGAAUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN286_c1_g2_3165_TPlot.pdf
TRINITY_DN286_c1_g2:3166	si_a636	TRINITY_DN286_c1_g2	3155	3175	3166	-26.30	-18.90	0.718631178707224	8.5	2-17,3174-3159	1-1,3175-3175[UP5];18-21,3158-3155[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUAGGCUUGGAAGAAUCGACC&UGUCGAUUUUUUUGAGUAAUA	2	0.95546755294484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN286_c1_g2_3166_TPlot.pdf
TRINITY_DN286_c1_g2:3167	si_a635	TRINITY_DN286_c1_g2	3156	3176	3167	-26.10	-18.90	0.724137931034483	9	3-18,3174-3159	1-2,3176-3175[UP5];19-21,3158-3156[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAGGCUUGGAAGAAUCGACCC&AUGUCGAUUUUUUUGAGUAAU	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN286_c1_g2_3167_TPlot.pdf
TRINITY_DN286_c1_g2:3168	si_a634	TRINITY_DN286_c1_g2	3157	3177	3168	-26.40	-18.90	0.715909090909091	10	4-19,3174-3159	1-3,3177-3175[UP5];20-21,3158-3157[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGGCUUGGAAGAAUCGACCCC&UAUGUCGAUUUUUUUGAGUAA	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN286_c1_g2_3168_TPlot.pdf
TRINITY_DN286_c1_g2:3169	si_a633	TRINITY_DN286_c1_g2	3158	3178	3169	-26.40	-18.90	0.715909090909091	11	5-20,3174-3159	1-4,3178-3175[UP5];21-21,3158-3158[UP3]	.((((((((((((((((....&....)))))))))))))))).	GGCUUGGAAGAAUCGACCCCC&UUAUGUCGAUUUUUUUGAGUA	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN286_c1_g2_3169_TPlot.pdf
TRINITY_DN286_c1_g2:3170	si_a632	TRINITY_DN286_c1_g2	3159	3179	3170	-26.10	-18.50	0.708812260536398	11.5	6-21,3174-3159	1-5,3179-3175[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUUGGAAGAAUCGACCCCCC&AUUAUGUCGAUUUUUUUGAGU	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN286_c1_g2_3170_TPlot.pdf
TRINITY_DN286_c1_g2:3252	si_s94	TRINITY_DN286_c1_g2	3240	3261	3252	-35.50	-23.30	0.656338028169014	8	1-10,3261-3252;12-17,3249-3244	11-11,3251-3250[AILt];18-21,3243-3240[UP3]	....((((((..((((((((((&))))))))))-.))))))....	GCCACCGAAGAAGAAGAAGAAG&CUUCUUCUUC-GCUUCGGAUUG	2	0.999995140447987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN286_c1_g2_3252_TPlot.pdf
TRINITY_DN286_c1_g2:3253	si_s93	TRINITY_DN286_c1_g2	3241	3262	3253	-34.80	-23.30	0.669540229885058	8	2-11,3261-3252;13-18,3249-3244	1-1,3262-3262[UP5];12-12,3251-3250[AILt];19-21,3243-3241[UP3]	...((((((..((((((((((.&.))))))))))-.))))))...	CCACCGAAGAAGAAGAAGAAGU&UCUUCUUCUUC-GCUUCGGAUU	2	0.999998809311826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN286_c1_g2_3253_TPlot.pdf
TRINITY_DN286_c1_g2:3254	si_s92	TRINITY_DN286_c1_g2	3242	3263	3254	-34.90	-23.30	0.667621776504298	8	3-12,3261-3252;14-19,3249-3244	1-2,3263-3262[UP5];13-13,3251-3250[AILt];20-21,3243-3242[UP3]	..((((((..((((((((((..&..))))))))))-.))))))..	CACCGAAGAAGAAGAAGAAGUC&UUCUUCUUCUUC-GCUUCGGAU	3	0.999999999996961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN286_c1_g2_3254_TPlot.pdf
TRINITY_DN286_c1_g2:3255	si_s91	TRINITY_DN286_c1_g2	3243	3264	3255	-34.70	-23.30	0.671469740634006	8	4-13,3261-3252;15-20,3249-3244	1-3,3264-3262[UP5];14-14,3251-3250[AILt];21-21,3243-3243[UP3]	.((((((..((((((((((...&...))))))))))-.)))))).	ACCGAAGAAGAAGAAGAAGUCA&UUUCUUCUUCUUC-GCUUCGGA	2	0.999999956005823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN286_c1_g2_3255_TPlot.pdf
TRINITY_DN286_c1_g2:3256	si_s90	TRINITY_DN286_c1_g2	3244	3265	3256	-35.30	-23.30	0.660056657223796	9	5-14,3261-3252;16-21,3249-3244	1-4,3265-3262[UP5];15-15,3251-3250[AILt]	((((((..((((((((((....&....))))))))))-.))))))	CCGAAGAAGAAGAAGAAGUCAA&CUUUCUUCUUCUUC-GCUUCGG	2	0.999999999634946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN286_c1_g2_3256_TPlot.pdf
TRINITY_DN286_c1_g2:3286	si_s87	TRINITY_DN286_c1_g2	3275	3300	3286	-32.90	-21.70	0.659574468085106	16	1-6,3300-3295;7-14,3289-3282;16-21,3280-3275	x-x,3294-3290[BULt];15-15,3281-3281[SIL]	((((((.((((((((.....((((((&))))))-----)))))))).))))))	AGGCGAUGGGGAAGGCAACCGGGGAA&UUCCUU-----UCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN286_c1_g2_3286_TPlot.pdf
TRINITY_DN286_c1_g2:3345	si_a64	TRINITY_DN286_c1_g2	3329	3354	3345	-29.40	-20.10	0.683673469387755	10.5	2-14,3353-3341;15-20,3335-3330	1-1,3354-3354[UP5];x-x,3340-3336[BULt];21-21,3329-3329[UP3]	.((((((.....(((((((((((((.&.)))))))))))))-----)))))).	CGACGGUGAGGCUUGGAAGAGGCGAC&CUCGCUUCUUUCAA-----AUUGUUU	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN286_c1_g2_3345_TPlot.pdf
TRINITY_DN286_c1_g2:3346	si_a63	TRINITY_DN286_c1_g2	3330	3355	3346	-30.20	-20.10	0.665562913907285	11.5	3-15,3353-3341;16-21,3335-3330	1-2,3355-3354[UP5];x-x,3340-3336[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	GACGGUGAGGCUUGGAAGAGGCGACC&ACUCGCUUCUUUCAA-----AUUGUU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN286_c1_g2_3346_TPlot.pdf
TRINITY_DN286_c1_g2:3419	si_a637	TRINITY_DN286_c1_g2	3408	3428	3419	-25.80	-18.90	0.732558139534884	10	1-16,3428-3413	17-21,3412-3408[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAGAGGCUUGGAAGAGUCGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN286_c1_g2_3419_TPlot.pdf
TRINITY_DN286_c1_g2:3420	si_a636	TRINITY_DN286_c1_g2	3409	3429	3420	-26.30	-18.90	0.718631178707224	9.5	2-17,3428-3413	1-1,3429-3429[UP5];18-21,3412-3409[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGAGGCUUGGAAGAGUCGACC&UGUCGAUUUUUUUGAGUAAUA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN286_c1_g2_3420_TPlot.pdf
TRINITY_DN286_c1_g2:3422	si_a634	TRINITY_DN286_c1_g2	3411	3431	3422	-26.40	-18.90	0.715909090909091	11	4-19,3428-3413	1-3,3431-3429[UP5];20-21,3412-3411[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGGCUUGGAAGAGUCGACCCC&UAUGUCGAUUUUUUUGAGUAA	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN286_c1_g2_3422_TPlot.pdf
TRINITY_DN286_c1_g2:3423	si_a633	TRINITY_DN286_c1_g2	3412	3432	3423	-26.40	-18.90	0.715909090909091	12	5-20,3428-3413	1-4,3432-3429[UP5];21-21,3412-3412[UP3]	.((((((((((((((((....&....)))))))))))))))).	GGCUUGGAAGAGUCGACCCCC&UUAUGUCGAUUUUUUUGAGUA	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN286_c1_g2_3423_TPlot.pdf
TRINITY_DN286_c1_g2:3424	si_a632	TRINITY_DN286_c1_g2	3413	3433	3424	-26.10	-18.50	0.708812260536398	12.5	6-21,3428-3413	1-5,3433-3429[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUUGGAAGAGUCGACCCCCC&AUUAUGUCGAUUUUUUUGAGU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN286_c1_g2_3424_TPlot.pdf
TRINITY_DN286_c1_g2:3516	si_s809	TRINITY_DN286_c1_g2	3505	3526	3516	-28.50	-18.80	0.659649122807018	11	1-6,3526-3521;7-16,3519-3510	x-x,3520-3520[BULt];17-21,3509-3505[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	CGAUUGGGAAGGUGACCGGGGA&UCUUCG-UUACCUUUUCUUAAU	3	0.999999999811082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN286_c1_g2_3516_TPlot.pdf
TRINITY_DN286_c1_g2:4819	si_a269	TRINITY_DN286_c1_g2	4809	4828	4819	-36.00	-24.40	0.677777777777778	6	1-11,4828-4818;13-14,4817-4816;17-20,4813-4810	12-12,x-x[BULq];15-16,4815-4814[SIL];21-21,4809-4809[UP3]	.((((..((-(((((((((((&))))))))))).))..)))).	CUCUUCACG-AGGUGUUUGCC&GGCAAACGCCUACGAAAAGAU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a269_TRINITY_DN286_c1_g2_4819_TPlot.pdf
TRINITY_DN286_c1_g2:6565	si_s79	TRINITY_DN286_c1_g2	6554	6574	6565	-26.20	-18.30	0.698473282442748	6.5	2-11,6573-6564;13-19,6562-6556	1-1,6574-6574[UP5];12-12,6563-6563[SIL];20-21,6555-6554[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	CCGAAGAAGAGAAAGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN286_c1_g2_6565_TPlot.pdf
TRINITY_DN286_c1_g2:6566	si_s78	TRINITY_DN286_c1_g2	6555	6575	6566	-26.20	-20.00	0.763358778625954	4.5	1-12,6575-6564;14-20,6562-6556	13-13,6563-6563[SIL];21-21,6555-6555[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CGAAGAAGAGAAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	4	0.999999999117959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN286_c1_g2_6566_TPlot.pdf
TRINITY_DN286_c1_g2:6567	si_s77	TRINITY_DN286_c1_g2	6556	6576	6567	-25.50	-20.60	0.807843137254902	3.5	1-13,6576-6564;15-21,6562-6556	14-14,6563-6563[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAAGAAGAGAAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN286_c1_g2_6567_TPlot.pdf
TRINITY_DN286_c1_g2:6568	si_s76	TRINITY_DN286_c1_g2	6557	6577	6568	-23.60	-17.30	0.733050847457627	4.5	2-14,6576-6564;16-21,6562-6557	1-1,6577-6577[UP5];15-15,6563-6563[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAAGAGAAAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN286_c1_g2_6568_TPlot.pdf
TRINITY_DN286_c1_g2:6569	si_s75	TRINITY_DN286_c1_g2	6558	6578	6569	-24.00	-16.40	0.683333333333333	6.5	3-15,6576-6564;17-21,6562-6558	1-2,6578-6577[UP5];16-16,6563-6563[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAAGAGAAAGAAGAAGAAAU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN286_c1_g2_6569_TPlot.pdf
TRINITY_DN286_c1_g2:6601	si_a66	TRINITY_DN286_c1_g2	6589	6611	6601	-26.70	-18.60	0.696629213483146	11	1-5,6611-6607;6-10,6605-6601;13-21,6597-6589	x-x,6606-6606[BULt];11-12,6600-6598[AILt]	(((((((((...(((((.(((((&)))))-)))))-..)))))))))	GAAGGCGAUGGGGAAGGCAAGCG&CGCUU-CUUUC-AAAUUGUUUUU	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN286_c1_g2_6601_TPlot.pdf
TRINITY_DN286_c3_g1:2059	si_a70	TRINITY_DN286_c3_g1	2048	2069	2059	-23.90	-16.32	0.682845188284519	12	1-6,2069-2064;10-19,2059-2050	7-9,2063-2060[AILt];20-21,2049-2048[UP3]	..((((((((((....((((((&))))))-...))))))))))..	UUUGAAGAGCAAGAAGGAAGGA&UCUUUC-AAAUUGUUUUUCAUU	2	0.999962114789459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN286_c3_g1_2059_TPlot.pdf
TRINITY_DN286_c3_g1:2060	si_a68	TRINITY_DN286_c3_g1	2050	2067	2060	-25.40	-18.60	0.732283464566929	8	1-8,2067-2060;12-21,2059-2050	9-11,x-x[BULq]	((((((((((---((((((((&))))))))...))))))))))	UGAAGAGCAA---GAAGGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN286_c3_g1_2060_TPlot.pdf
TRINITY_DN286_c3_g1:2065	si_s312	TRINITY_DN286_c3_g1	2054	2073	2065	-29.00	-19.10	0.658620689655173	9.5	4-8,2070-2066;10-20,2065-2055	1-3,2073-2071[UP5];9-9,x-x[BULq];21-21,2054-2054[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	GAGCAAGAAGGA-AGGAUCAC&AAAAUUCUGUCCUUCUUGUUA	2	0.999999988384745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN286_c3_g1_2065_TPlot.pdf
TRINITY_DN286_c3_g1:2069	si_s79	TRINITY_DN286_c3_g1	2058	2087	2069	-26.20	-19.10	0.729007633587786	20.5	1-9,2087-2079;10-21,2069-2058	x-x,2078-2070[BULt]	((((((((((((.........(((((((((&)))))))))---------))))))))))))	AAGAAGGAAGGAUCACUCGUAAAGGAAGAA&UUUUUUCUU---------UCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN286_c3_g1_2069_TPlot.pdf
TRINITY_DN286_c3_g1:2079	si_s78	TRINITY_DN286_c3_g1	2059	2088	2079	-26.20	-19.00	0.725190839694656	20.5	1-10,2088-2079;11-21,2069-2059	x-x,2078-2070[BULt]	(((((((((((.........((((((((((&))))))))))---------)))))))))))	AGAAGGAAGGAUCACUCGUAAAGGAAGAAA&UUUUUUUCUU---------UCCUUUCUUCU	2	0.999999999963493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN286_c3_g1_2079_TPlot.pdf
TRINITY_DN286_c3_g1:2111	si_s69	TRINITY_DN286_c3_g1	2100	2120	2111	-23.40	-17.40	0.743589743589744	5.5	1-11,2120-2110;13-19,2108-2102	12-12,2109-2109[SIL];20-21,2101-2100[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AUAAGAGAAUAAAUGGAAGUU&AACUUCUAUUUUUUUUCUUUC	3	0.999999996719684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN286_c3_g1_2111_TPlot.pdf
TRINITY_DN286_c3_g1:2115	si_s65	TRINITY_DN286_c3_g1	2104	2124	2115	-26.00	-18.50	0.711538461538462	7.5	4-15,2121-2110;17-21,2108-2104	1-3,2124-2122[UP5];16-16,2109-2109[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GAGAAUAAAUGGAAGUUGAAA&UAGCAACUUCUAUUUUUUUUC	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN286_c3_g1_2115_TPlot.pdf
TRINITY_DN286_c3_g1:938	si_s75	TRINITY_DN286_c3_g1	926	947	938	-24.00	-16.20	0.675	8.5	1-4,947-944;7-16,941-932;17-20,930-927	5-6,943-942[SIL];x-x,931-931[BULt];21-21,926-926[UP3]	.((((.((((((((((..((((&))))..))))))))))-)))).	CGAGAUGGAAAGAAAAUUGGUA&UAUUUUUUUUCUUUCC-UUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN286_c3_g1_938_TPlot.pdf
TRINITY_DN286_c3_g1:943	si_s70	TRINITY_DN286_c3_g1	932	957	943	-25.80	-17.18	0.665891472868217	19	1-8,957-950;12-21,941-932	9-11,949-942[AILt]	((((((((((........((((((((&))))))))-----...))))))))))	GGAAAGAAAAUUGGUAUUGUAGGGGU&ACUUCUAU-----UUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN286_c3_g1_943_TPlot.pdf
TRINITY_DN286_c46_g1:36	si_a860	TRINITY_DN286_c46_g1	25	45	36	-24.30	-17.80	0.732510288065844	8	1-2,45-44;5-12,41-34;14-20,32-26	3-4,43-42[SIL];13-13,33-33[SIL];21-21,25-25[UP3]	.(((((((.((((((((..((&))..)))))))).))))))).	CGUCUUUGUUGAUUGGAGGUC&GAAAUCCAAUUAUUAAAGAUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN286_c46_g1_36_TPlot.pdf
TRINITY_DN2870_c0_g1:10580	si_a56	TRINITY_DN2870_c0_g1	10570	10589	10580	-38.90	-25.50	0.655526992287918	6.5	1-4,10589-10586;7-12,10583-10578;14-20,10577-10571	5-6,10585-10584[SIL];13-13,x-x[BULq];21-21,10570-10570[UP3]	.(((((((-((((((..((((&))))..)))))).))))))).	CGAAGGAA-CGAGUCCUCUCC&GGAGUCGACUCGCUUCUUUCA	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN2870_c0_g1_10580_TPlot.pdf
TRINITY_DN2870_c0_g1:10742	si_a502	TRINITY_DN2870_c0_g1	10731	10751	10742	-32.10	-21.80	0.679127725856698	11	1-3,10751-10749;5-17,10747-10735	4-4,10748-10748[SIL];18-21,10734-10731[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UCGACGGGGAAGGCGAGUGGC&GUUUUUCGUCUUCCUUGGAAU	2	0.999988093684528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN2870_c0_g1_10742_TPlot.pdf
TRINITY_DN2870_c0_g1:11980	si_a594	TRINITY_DN2870_c0_g1	11969	11990	11980	-32.30	-21.30	0.659442724458204	8.5	1-4,11990-11987;5-10,11985-11980;12-18,11978-11972	x-x,11986-11986[BULt];11-11,11979-11979[SIL];19-21,11971-11969[UP3]	...(((((((.((((((.((((&))))-)))))).)))))))...	UGGGCGAAGAAUUUGUCUCUUC&GAAG-GACAGAAUUUUCGCAAU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN2870_c0_g1_11980_TPlot.pdf
TRINITY_DN2870_c0_g1:4150	si_a278	TRINITY_DN2870_c0_g1	4138	4158	4150	-34.20	-23.00	0.672514619883041	8	1-6,4158-4153;9-13,4151-4147;14-19,4145-4140	7-8,4152-4152[AILq];x-x,4146-4146[BULt];20-21,4139-4138[UP3]	..((((((.(((((.-((((((&))))))..)))))-))))))..	ACCCGGGCAGAUCUG-UCGUAG&CUACGAAAAGAUC-GCUUGGAU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a278_TRINITY_DN2870_c0_g1_4150_TPlot.pdf
TRINITY_DN2870_c0_g1:4352	si_s602	TRINITY_DN2870_c0_g1	4341	4362	4352	-28.10	-19.80	0.704626334519573	9.5	1-4,4362-4359;6-17,4356-4345	5-5,4358-4357[AILt];18-21,4344-4341[UP3]	....((((((((((((..((((&))))-.))))))))))))....	GGCUGAAGAGAUUCGCGCUGGG&UCCA-AGCGAAUCUUUUUUAAA	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN2870_c0_g1_4352_TPlot.pdf
TRINITY_DN2870_c0_g1:4640	si_s625	TRINITY_DN2870_c0_g1	4630	4648	4640	-37.00	-28.70	0.775675675675676	4	1-7,4648-4642;9-15,4641-4635;17-21,4634-4630	8-8,x-x[BULq];16-16,x-x[BULq]	(((((-(((((((-(((((((&))))))).))))))).)))))	CGCCU-CGAAGAG-UCGCUUG&CAAGCGAUCUUUUCGUAGGCG	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN2870_c0_g1_4640_TPlot.pdf
TRINITY_DN2870_c0_g1:4641	si_s624	TRINITY_DN2870_c0_g1	4631	4649	4641	-37.90	-27.30	0.720316622691293	5	2-8,4648-4642;10-16,4641-4635;18-21,4634-4631	1-1,4649-4649[UP5];9-9,x-x[BULq];17-17,x-x[BULq]	((((-(((((((-(((((((.&.))))))).))))))).))))	GCCU-CGAAGAG-UCGCUUGA&CCAAGCGAUCUUUUCGUAGGC	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN2870_c0_g1_4641_TPlot.pdf
TRINITY_DN2871_c0_g1:379	si_s71	TRINITY_DN2871_c0_g1	368	388	379	-25.70	-16.90	0.657587548638132	8.5	1-6,388-383;9-10,380-379;12-13,377-376;15-21,374-368	7-8,382-381[SIL];11-11,378-378[SIL];14-14,375-375[SIL]	(((((((.((.((..((((((&))))))..)).)).)))))))	AGGAAAGUGAUAAUUUGGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2871_c0_g1_379_TPlot.pdf
TRINITY_DN2871_c0_g1:709	si_s74	TRINITY_DN2871_c0_g1	698	720	709	-25.00	-17.30	0.692	11.5	1-7,720-714;8-17,711-702	x-x,713-712[BULt];18-21,701-698[UP3]	....((((((((((..(((((((&)))))))--))))))))))....	GUUUGGAGAGAAGAUGGAGAUAG&CUAUUUU--UUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2871_c0_g1_709_TPlot.pdf
TRINITY_DN2871_c0_g1:722	si_a787	TRINITY_DN2871_c0_g1	712	731	722	-26.30	-18.30	0.695817490494297	8.5	1-9,731-723;11-17,721-715;19-21,714-712	10-10,722-722[SIL];18-18,x-x[BULq]	(((-(((((((.(((((((((&))))))))).))))))).)))	UGG-AGAUAGGUGGGUGGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999988113296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2871_c0_g1_722_TPlot.pdf
TRINITY_DN2872_c0_g1:1881	si_a182	TRINITY_DN2872_c0_g1	1865	1890	1881	-31.80	-20.72	0.651572327044025	15.5	1-10,1890-1881;12-19,1874-1867	11-11,1880-1875[AILt];20-21,1866-1865[UP3]	..((((((((......((((((((((&))))))))))-----.))))))))..	GAAGGGAGAGCCAAGUUGUUAUCUAG&CUAGAUAAUA-----UCUUUCCCUGU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN2872_c0_g1_1881_TPlot.pdf
TRINITY_DN2872_c0_g1:2066	si_s76	TRINITY_DN2872_c0_g1	2055	2075	2066	-23.60	-16.30	0.690677966101695	9	3-17,2073-2059	1-2,2075-2074[UP5];18-21,2058-2055[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUACAAGGAAAGAAAAGAGUU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2872_c0_g1_2066_TPlot.pdf
TRINITY_DN2872_c0_g1:2068	si_s74	TRINITY_DN2872_c0_g1	2057	2077	2068	-25.00	-16.30	0.652	11	5-19,2073-2059	1-4,2077-2074[UP5];20-21,2058-2057[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAAGGAAAGAAAAGAGUUCA&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN2872_c0_g1_2068_TPlot.pdf
TRINITY_DN2872_c0_g1:2277	si_a140	TRINITY_DN2872_c0_g1	2265	2287	2277	-25.20	-17.40	0.69047619047619	10	1-9,2287-2279;10-10,2277-2277;11-19,2275-2267	x-x,2278-2278[BULt];x-x,2276-2276[BULt];20-21,2266-2265[UP3]	..(((((((((.(.(((((((((&)))))))))-)-)))))))))..	UCAGCAGCAGCUGUAUUAGUUGC&GUAAUUAAU-C-GUUGUUGUUUU	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN2872_c0_g1_2277_TPlot.pdf
TRINITY_DN2872_c0_g1:2280	si_a138	TRINITY_DN2872_c0_g1	2267	2289	2280	-26.30	-19.60	0.745247148288973	8	1-11,2289-2279;12-12,2277-2277;13-21,2275-2267	x-x,2278-2278[BULt];x-x,2276-2276[BULt]	(((((((((.(.(((((((((((&)))))))))))-)-)))))))))	AGCAGCAGCUGUAUUAGUUGCUG&UAGUAAUUAAU-C-GUUGUUGUU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN2872_c0_g1_2280_TPlot.pdf
TRINITY_DN2872_c0_g1:2282	si_a136	TRINITY_DN2872_c0_g1	2269	2291	2282	-25.70	-17.50	0.680933852140078	9	3-13,2289-2279;14-14,2277-2277;15-21,2275-2269	1-2,2291-2290[UP5];x-x,2278-2278[BULt];x-x,2276-2276[BULt]	(((((((.(.(((((((((((..&..)))))))))))-)-)))))))	CAGCAGCUGUAUUAGUUGCUGGG&AAUAGUAAUUAAU-C-GUUGUUG	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN2872_c0_g1_2282_TPlot.pdf
TRINITY_DN2873_c0_g1:1194	si_a634	TRINITY_DN2873_c0_g1	1183	1203	1194	-26.40	-17.90	0.678030303030303	8.5	1-16,1203-1188	17-21,1187-1183[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAUCUAAAGAGAUCGACGUA&UAUGUCGAUUUUUUUGAGUAA	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN2873_c0_g1_1194_TPlot.pdf
TRINITY_DN2873_c0_g1:1195	si_a633	TRINITY_DN2873_c0_g1	1184	1204	1195	-26.40	-18.10	0.685606060606061	8	2-17,1203-1188	1-1,1204-1204[UP5];18-21,1187-1184[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAUCUAAAGAGAUCGACGUAG&UUAUGUCGAUUUUUUUGAGUA	2	0.999665500007058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2873_c0_g1_1195_TPlot.pdf
TRINITY_DN2873_c0_g1:1196	si_a632	TRINITY_DN2873_c0_g1	1185	1205	1196	-26.10	-18.10	0.693486590038314	9	3-18,1203-1188	1-2,1205-1204[UP5];19-21,1187-1185[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUCUAAAGAGAUCGACGUAGA&AUUAUGUCGAUUUUUUUGAGU	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN2873_c0_g1_1196_TPlot.pdf
TRINITY_DN2873_c0_g1:1197	si_a631	TRINITY_DN2873_c0_g1	1186	1206	1197	-25.70	-18.10	0.704280155642023	9.5	4-19,1203-1188	1-3,1206-1204[UP5];20-21,1187-1186[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCUAAAGAGAUCGACGUAGAG&UAUUAUGUCGAUUUUUUUGAG	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN2873_c0_g1_1197_TPlot.pdf
TRINITY_DN2873_c0_g1:1198	si_a630	TRINITY_DN2873_c0_g1	1187	1207	1198	-25.80	-20.20	0.782945736434108	7.5	1-2,1207-1206;4-20,1204-1188	3-3,1205-1205[SIL];21-21,1187-1187[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	CUAAAGAGAUCGACGUAGAGC&GUAUUAUGUCGAUUUUUUUGA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN2873_c0_g1_1198_TPlot.pdf
TRINITY_DN2873_c0_g1:1200	si_a628	TRINITY_DN2873_c0_g1	1189	1209	1200	-27.10	-18.80	0.693726937269373	9	3-4,1207-1206;6-21,1204-1189	1-2,1209-1208[UP5];5-5,1205-1205[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	AAAGAGAUCGACGUAGAGCAG&GCGUAUUAUGUCGAUUUUUUU	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN2873_c0_g1_1200_TPlot.pdf
TRINITY_DN2873_c0_g1:1660	si_a668	TRINITY_DN2873_c0_g1	1648	1669	1660	-33.20	-27.00	0.813253012048193	7	1-13,1669-1657;16-21,1653-1648	14-15,1656-1654[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	GUGAAUUAUGGGAUCGGUGGGC&GCCUAUUGAUUCC-UUAUUCAC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN2873_c0_g1_1660_TPlot.pdf
TRINITY_DN2873_c0_g1:197	si_s63	TRINITY_DN2873_c0_g1	186	208	197	-25.80	-18.30	0.709302325581395	8	1-7,208-202;8-21,199-186	x-x,201-200[BULt]	((((((((((((((..(((((((&)))))))--))))))))))))))	AAGAGAGUAGGAGUAAUGUUAAU&GUUAGCA--ACUUCUAUUUUUUU	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2873_c0_g1_197_TPlot.pdf
TRINITY_DN2873_c0_g1:2411	si_s823	TRINITY_DN2873_c0_g1	2400	2420	2411	-22.20	-15.40	0.693693693693694	9	1-5,2420-2416;7-18,2414-2403	6-6,2415-2415[SIL];19-21,2402-2400[UP3]	...((((((((((((.(((((&))))).))))))))))))...	GUGUGUUUUUCGUUGGUGGGA&UCUUAAUAAUGAAAAACAAUU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN2873_c0_g1_2411_TPlot.pdf
TRINITY_DN2873_c0_g1:920	si_a139	TRINITY_DN2873_c0_g1	909	928	920	-25.90	-17.90	0.691119691119691	8	1-7,928-922;10-19,920-911	8-9,921-921[AILq];20-21,910-909[UP3]	..((((((((((.-(((((((&)))))))..))))))))))..	CUACAACAACGGC-GAUUACU&AGUAAUUAAUCGUUGUUGUUU	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN2873_c0_g1_920_TPlot.pdf
TRINITY_DN2873_c0_g1:921	si_a138	TRINITY_DN2873_c0_g1	910	929	921	-26.30	-19.00	0.722433460076046	7	1-8,929-922;11-20,920-911	9-10,921-921[AILq];21-21,910-910[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	UACAACAACGGC-GAUUACUA&UAGUAAUUAAUCGUUGUUGUU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN2873_c0_g1_921_TPlot.pdf
TRINITY_DN2873_c0_g1:922	si_a137	TRINITY_DN2873_c0_g1	911	930	922	-26.50	-19.00	0.716981132075472	7	2-9,929-922;12-21,920-911	1-1,930-930[UP5];10-11,921-921[AILq]	((((((((((.-((((((((.&.))))))))..))))))))))	ACAACAACGGC-GAUUACUAC&AUAGUAAUUAAUCGUUGUUGU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN2873_c0_g1_922_TPlot.pdf
TRINITY_DN2874_c0_g1:485	si_a397	TRINITY_DN2874_c0_g1	474	493	485	-24.00	-16.80	0.7	7	1-5,493-489;7-21,488-474	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	AGAUGGGGCAGUUCU-UGUUC&GAAUAUAGAAUUGUUUUGUUU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN2874_c0_g1_485_TPlot.pdf
TRINITY_DN2875_c0_g1:263	si_a20	TRINITY_DN2875_c0_g1	252	272	263	-26.70	-17.60	0.659176029962547	10.5	1-11,272-262;13-18,260-255	12-12,261-261[SIL];19-21,254-252[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UAAGACUGAUGAUGGAUGGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2875_c0_g1_263_TPlot.pdf
TRINITY_DN2875_c0_g1:264	si_a317	TRINITY_DN2875_c0_g1	252	273	264	-24.30	-17.10	0.703703703703704	8	1-11,273-263;13-15,261-259;17-21,256-252	12-12,262-262[SIL];16-16,258-257[AILt]	(((((..(((.(((((((((((&))))))))))).)))-.)))))	UAAGACUGAUGAUGGAUGGGUC&GAUUUAUCCAUGAUU-UUUUUA	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2875_c0_g1_264_TPlot.pdf
TRINITY_DN2875_c0_g1:265	si_a18	TRINITY_DN2875_c0_g1	254	274	265	-26.30	-17.80	0.67680608365019	10.5	3-13,272-262;15-20,260-255	1-2,274-273[UP5];14-14,261-261[SIL];21-21,254-254[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	AGACUGAUGAUGGAUGGGUCU&AAGCCUAUUUAUUUUUAGUUC	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN2875_c0_g1_265_TPlot.pdf
TRINITY_DN2875_c0_g1:270	si_s861	TRINITY_DN2875_c0_g1	252	279	270	-40.10	-26.10	0.650872817955112	11.5	2-12,278-268;13-14,266-265;15-21,258-252	1-1,279-279[UP5];x-x,267-267[BULt];x-x,264-259[BULt]	(((((((......((.(((((((((((.&.)))))))))))-))------)))))))	UAAGACUGAUGAUGGAUGGGUCUGGGAU&CUCCUAGACCUA-CC------GGUCUUA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s861_TRINITY_DN2875_c0_g1_270_TPlot.pdf
TRINITY_DN2876_c0_g1:2579	si_a633	TRINITY_DN2876_c0_g1	2568	2589	2579	-26.40	-17.20	0.651515151515151	10	2-7,2588-2583;10-19,2579-2570	1-1,2589-2589[UP5];8-9,2582-2580[AILt];20-21,2569-2568[UP3]	..((((((((((...((((((.&.))))))-..))))))))))..	ACCUCGAGAAAAGGAGACAUAG&UUAUGUC-GAUUUUUUUGAGUA	3	0.999999999998473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN2876_c0_g1_2579_TPlot.pdf
TRINITY_DN2876_c0_g1:3228	si_a498	TRINITY_DN2876_c0_g1	3211	3237	3228	-33.50	-22.60	0.674626865671642	10.5	1-4,3237-3234;6-15,3232-3223;16-20,3216-3212	5-5,3233-3233[SIL];x-x,3222-3217[BULt];21-21,3211-3211[UP3]	.(((((......((((((((((.((((&)))).))))))))))------))))).	UGGGGAUUACAAGGACGAAAAAGGACA&UGUCGUUUUUCGUCU------UCCUUG	2	0.999998546942701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2876_c0_g1_3228_TPlot.pdf
TRINITY_DN2876_c0_g1:3229	si_a497	TRINITY_DN2876_c0_g1	3212	3238	3229	-32.00	-22.30	0.696875	10.5	2-5,3237-3234;7-16,3232-3223;17-21,3216-3212	1-1,3238-3238[UP5];6-6,3233-3233[SIL];x-x,3222-3217[BULt]	(((((......((((((((((.((((.&.)))).))))))))))------)))))	GGGGAUUACAAGGACGAAAAAGGACAA&AUGUCGUUUUUCGUCU------UCCUU	3	0.999999969590209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2876_c0_g1_3229_TPlot.pdf
TRINITY_DN2876_c0_g1:3232	si_a494	TRINITY_DN2876_c0_g1	3221	3241	3232	-29.50	-20.20	0.684745762711864	10.5	5-8,3237-3234;10-20,3232-3222	1-4,3241-3238[UP5];9-9,3233-3233[SIL];21-21,3221-3221[UP3]	.(((((((((((.((((....&....)))).))))))))))).	AAGGACGAAAAAGGACAAAAG&AAUAUGUCGUUUUUCGUCUUC	2	0.999964840884371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN2876_c0_g1_3232_TPlot.pdf
TRINITY_DN2876_c0_g1:3233	si_a493	TRINITY_DN2876_c0_g1	3222	3242	3233	-29.50	-20.20	0.684745762711864	11.5	6-9,3237-3234;11-21,3232-3222	1-5,3242-3238[UP5];10-10,3233-3233[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	AGGACGAAAAAGGACAAAAGA&GAAUAUGUCGUUUUUCGUCUU	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN2876_c0_g1_3233_TPlot.pdf
TRINITY_DN2876_c0_g1:6283	si_a839	TRINITY_DN2876_c0_g1	6270	6292	6283	-26.50	-17.30	0.652830188679245	14.5	6-12,6287-6281;13-20,6278-6271	1-5,6292-6288[UP5];x-x,6280-6279[BULt];21-21,6270-6270[UP3]	.((((((((..(((((((.....&.....)))))))--)))))))).	CAGUUGGCAGCACUUCUAGUGAC&AAAAAUAGAAGU--UGCUAACUU	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN2876_c0_g1_6283_TPlot.pdf
TRINITY_DN2876_c0_g1:6599	si_a396	TRINITY_DN2876_c0_g1	6588	6608	6599	-24.70	-17.40	0.704453441295547	5.5	1-4,6608-6605;6-19,6603-6590	5-5,6604-6604[SIL];20-21,6589-6588[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AGUAGGACAAUUCUAUUUUCU&AGAAUAUAGAAUUGUUUUGUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN2876_c0_g1_6599_TPlot.pdf
TRINITY_DN2876_c0_g1:6602	si_a393	TRINITY_DN2876_c0_g1	6591	6611	6602	-22.70	-16.50	0.726872246696035	8	4-7,6608-6605;9-21,6603-6591	1-3,6611-6609[UP5];8-8,6604-6604[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AGGACAAUUCUAUUUUCUCAU&UUAAGAAUAUAGAAUUGUUUU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN2876_c0_g1_6602_TPlot.pdf
TRINITY_DN2876_c1_g1:1203	si_s88	TRINITY_DN2876_c1_g1	1192	1213	1203	-34.80	-23.10	0.663793103448276	7.5	1-2,1213-1212;3-5,1210-1208;7-19,1206-1194;21-21,1192-1192	x-x,1211-1211[BULt];6-6,1207-1207[SIL];20-20,1193-1193[SIL]	(.(((((((((((((.(((.((&))-))).))))))))))))).)	GUGGCGAAGGAGGAGCAAGCGA&UC-CUUUCUUCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2876_c1_g1_1203_TPlot.pdf
TRINITY_DN2876_c1_g1:1260	si_s75	TRINITY_DN2876_c1_g1	1249	1269	1260	-24.00	-15.60	0.65	10.5	1-4,1269-1266;6-19,1264-1251	5-5,1265-1265[SIL];20-21,1250-1249[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GCGGAGGAGGGGAAAGCGGUA&UAUUUUUUUUCUUUCCUUUCU	0	0.94493391655181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2876_c1_g1_1260_TPlot.pdf
TRINITY_DN2876_c1_g1:1263	si_s77	TRINITY_DN2876_c1_g1	1252	1272	1263	-25.50	-17.70	0.694117647058824	16.5	9-21,1264-1252	1-8,1272-1265[UP5]	(((((((((((((........&........)))))))))))))	GAGGAGGGGAAAGCGGUAACG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2876_c1_g1_1263_TPlot.pdf
TRINITY_DN28770_c0_g1:115	si_a20	TRINITY_DN28770_c0_g1	104	124	115	-26.70	-17.44	0.653183520599251	14	1-4,124-121;10-20,115-105	5-9,120-116[SIL];21-21,104-104[UP3]	.(((((((((((.....((((&)))).....))))))))))).	AAGAACUGGAGAAACUGGGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.999999996828168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN28770_c0_g1_115_TPlot.pdf
TRINITY_DN28770_c0_g1:299	si_s86	TRINITY_DN28770_c0_g1	287	309	299	-32.90	-22.10	0.671732522796353	10.5	2-5,308-305;7-10,302-299;11-20,297-288	1-1,309-309[UP5];6-6,304-303[AILt];x-x,298-298[BULt];21-21,287-287[UP3]	.((((((((((.((((..((((.&.))))-.))))-)))))))))).	UGCGGAGAAGAUGGAGCUGGAAC&UUUCC-UUUCU-UCUUCUUCGCU	1	0.417596943747047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN28770_c0_g1_299_TPlot.pdf
TRINITY_DN28771_c3_g1:297	si_a561	TRINITY_DN28771_c3_g1	285	306	297	-35.40	-23.70	0.669491525423729	7	1-10,306-297;11-11,295-295;13-17,293-289;19-21,287-285	x-x,296-296[BULt];12-12,294-294[SIL];18-18,288-288[SIL]	(((.(((((.(.((((((((((&))))))))))-).))))).)))	UGCCGUUCAGGUGGGAGAUGAA&UUUAUCUCCC-CGUGAAUCGUA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN28771_c3_g1_297_TPlot.pdf
TRINITY_DN2877_c0_g1:230	si_s72	TRINITY_DN2877_c0_g1	219	239	230	-24.10	-16.50	0.684647302904564	12	3-8,237-232;11-21,229-219	1-2,239-238[UP5];9-10,231-230[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	AAGGGGAGAGAUCAGGUGGUU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2877_c0_g1_230_TPlot.pdf
TRINITY_DN2877_c0_g1:2906	si_s801	TRINITY_DN2877_c0_g1	2895	2913	2906	-28.20	-18.88	0.669503546099291	12.5	1-5,2913-2909;10-19,2906-2897	6-9,2908-2907[AILq];20-21,2896-2895[UP3]	..((((((((((..--(((((&)))))....))))))))))..	CCGGUAGCGAAGUC--GAUGC&GUAUUUUAUCUUCGUUACCUU	2	0.999361043358898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN2877_c0_g1_2906_TPlot.pdf
TRINITY_DN2877_c0_g1:3018	si_s804	TRINITY_DN2877_c0_g1	3007	3027	3018	-27.90	-21.40	0.767025089605735	6.5	2-10,3026-3018;12-19,3016-3009	1-1,3027-3027[UP5];11-11,3017-3017[SIL];20-21,3008-3007[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UUAAAGGUGAGGAAGAUGAAU&UUUUAUCUUCGUUACCUUUUC	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN2877_c0_g1_3018_TPlot.pdf
TRINITY_DN2877_c0_g1:3056	si_s76	TRINITY_DN2877_c0_g1	3044	3065	3056	-23.60	-16.10	0.682203389830509	11.5	5-18,3061-3048;19-20,3046-3045	1-4,3065-3062[UP5];x-x,3047-3047[BULt];21-21,3044-3044[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	UGGAAAAGGAAAGAAGAGCAUU&AUUUUUUUUCUUUCCUUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2877_c0_g1_3056_TPlot.pdf
TRINITY_DN2877_c0_g1:3057	si_s75	TRINITY_DN2877_c0_g1	3045	3066	3057	-24.00	-16.10	0.670833333333333	12.5	6-19,3061-3048;20-21,3046-3045	1-5,3066-3062[UP5];x-x,3047-3047[BULt]	((.((((((((((((((.....&.....))))))))))))))-))	GGAAAAGGAAAGAAGAGCAUUG&UAUUUUUUUUCUUUCCUUU-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2877_c0_g1_3057_TPlot.pdf
TRINITY_DN28797_c0_g1:248	si_s330	TRINITY_DN28797_c0_g1	237	259	248	-31.90	-21.10	0.661442006269593	9	2-6,258-254;7-15,251-243;17-21,241-237	1-1,259-259[UP5];x-x,253-252[BULt];16-16,242-242[SIL]	(((((.(((((((((..(((((.&.)))))--))))))))).)))))	CUGUGUGUCGUGUGUCUUUGUGU&UUACAA--ACAUACGAUUCACGG	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s330_TRINITY_DN28797_c0_g1_248_TPlot.pdf
TRINITY_DN2879_c0_g1:455	si_s364	TRINITY_DN2879_c0_g1	444	464	455	-38.50	-25.50	0.662337662337662	5.5	1-10,464-455;12-18,453-447;20-21,445-444	11-11,454-454[SIL];19-19,446-446[SIL]	((.(((((((.((((((((((&)))))))))).))))))).))	GCUGGCGAUCAGUUUAGUCUA&UAGAUUGAACCGAUCGCUCGC	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s364_TRINITY_DN2879_c0_g1_455_TPlot.pdf
TRINITY_DN2879_c0_g1:458	si_s361	TRINITY_DN2879_c0_g1	447	467	458	-32.70	-22.50	0.688073394495413	8.5	4-13,464-455;15-21,453-447	1-3,467-465[UP5];14-14,454-454[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GGCGAUCAGUUUAGUCUACGC&AAAUAGAUUGAACCGAUCGCU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s361_TRINITY_DN2879_c0_g1_458_TPlot.pdf
TRINITY_DN2879_c0_g1:487	si_a783	TRINITY_DN2879_c0_g1	476	495	487	-24.70	-16.40	0.663967611336032	7	1-9,495-487;11-17,486-480	10-10,x-x[BULq];18-21,479-476[UP3]	....(((((((-(((((((((&))))))))).)))))))....	GUCAAGAAAAA-AGAGGAGUU&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2879_c0_g1_487_TPlot.pdf
TRINITY_DN2879_c0_g1:701	si_s67	TRINITY_DN2879_c0_g1	690	711	701	-25.60	-17.60	0.6875	8	1-7,711-705;8-17,703-694	x-x,704-704[BULt];18-21,693-690[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	UAUUGAGAAAAUGGUAAGUUGC&GCAACUU-CUAUUUUUUUUCUU	3	0.999999935685347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2879_c0_g1_701_TPlot.pdf
TRINITY_DN2879_c0_g1:703	si_s65	TRINITY_DN2879_c0_g1	692	713	703	-26.00	-17.70	0.680769230769231	9	3-9,711-705;10-19,703-694	1-2,713-712[UP5];x-x,704-704[BULt];20-21,693-692[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	UUGAGAAAAUGGUAAGUUGCAG&UAGCAACUU-CUAUUUUUUUUC	3	0.999972643704982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN2879_c0_g1_703_TPlot.pdf
TRINITY_DN2879_c0_g1:706	si_s63	TRINITY_DN2879_c0_g1	694	715	706	-25.80	-17.70	0.686046511627907	10.5	5-11,711-705;12-21,703-694	1-4,715-712[UP5];x-x,704-704[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	GAGAAAAUGGUAAGUUGCAGUA&GUUAGCAACUU-CUAUUUUUUU	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2879_c0_g1_706_TPlot.pdf
TRINITY_DN2880_c0_g1:1045	si_a778	TRINITY_DN2880_c0_g1	1034	1055	1045	-28.30	-18.70	0.660777385159011	7	1-2,1055-1054;4-8,1052-1048;9-11,1046-1044;13-21,1042-1034	3-3,1053-1053[SIL];x-x,1047-1047[BULt];12-12,1043-1043[SIL]	(((((((((.(((.(((((.((&)).)))))-))).)))))))))	GGAAAGUAGCAGAGGUUGAUUC&GAUUCAAC-UCUUCUAUUUUUC	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN2880_c0_g1_1045_TPlot.pdf
TRINITY_DN2880_c0_g1:1349	si_a787	TRINITY_DN2880_c0_g1	1336	1358	1349	-26.30	-17.28	0.657034220532319	9	1-5,1358-1354;7-15,1352-1344;18-21,1339-1336	6-6,1353-1353[SIL];16-17,1343-1340[AILt]	((((....(((((((((.(((((&))))).)))))))))--..))))	UGGAUUUUGUGGAGAAACAGAGG&CUUCUAUUUUUCUAU--UUUCCA	2	0.999999999946304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2880_c0_g1_1349_TPlot.pdf
TRINITY_DN2880_c0_g1:1686	si_a70	TRINITY_DN2880_c0_g1	1676	1695	1686	-23.90	-17.60	0.736401673640168	5	1-16,1695-1680;18-21,1679-1676	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	AGUG-GAAAUAAUUUGAGGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2880_c0_g1_1686_TPlot.pdf
TRINITY_DN2880_c0_g1:885	si_a327	TRINITY_DN2880_c0_g1	874	894	885	-28.40	-21.60	0.76056338028169	5	1-19,894-876	20-21,875-874[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAACAAGGAGUAAAAGAAUUA&UGAUUUUUUUAUUCCUUGUCC	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN2880_c0_g1_885_TPlot.pdf
TRINITY_DN2880_c0_g1:886	si_a326	TRINITY_DN2880_c0_g1	875	895	886	-26.20	-21.60	0.824427480916031	4.5	2-20,894-876	1-1,895-895[UP5];21-21,875-875[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AACAAGGAGUAAAAGAAUUAA&AUGAUUUUUUUAUUCCUUGUC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN2880_c0_g1_886_TPlot.pdf
TRINITY_DN2880_c0_g1:887	si_a325	TRINITY_DN2880_c0_g1	876	896	887	-25.90	-21.60	0.833976833976834	5.5	3-21,894-876	1-2,896-895[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	ACAAGGAGUAAAAGAAUUAAC&CAUGAUUUUUUUAUUCCUUGU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2880_c0_g1_887_TPlot.pdf
TRINITY_DN28827_c0_g2:134	si_a639	TRINITY_DN28827_c0_g2	123	143	134	-23.60	-15.40	0.652542372881356	8	2-14,142-130	1-1,143-143[UP5];15-21,129-123[UP3]	.......(((((((((((((.&.))))))))))))).......	GCAUCCCACUCAAAAAAAUCA&CGAUUUUUUUGAGUAAUAUAU	2	0.999997862791726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN28827_c0_g2_134_TPlot.pdf
TRINITY_DN2883_c0_g1:1694	si_a495	TRINITY_DN2883_c0_g1	1683	1703	1694	-31.90	-21.20	0.664576802507837	7.5	3-13,1701-1691;15-21,1689-1683	1-2,1703-1702[UP5];14-14,1690-1690[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GGGAGAUUGAAAAUGACGUCU&AUAUGUCGUUUUUCGUCUUCC	4	0.99999999949483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN2883_c0_g1_1694_TPlot.pdf
TRINITY_DN2883_c0_g1:714	si_s79	TRINITY_DN2883_c0_g1	698	723	714	-26.20	-18.10	0.690839694656489	14	1-12,723-712;13-19,706-700	x-x,711-707[BULt];20-21,699-698[UP3]	..(((((((.....((((((((((((&))))))))))))-----)))))))..	AUGAAGAAAGAGCUGGAAAGGGAAAA&UUUUUUCUUUCC-----UUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2883_c0_g1_714_TPlot.pdf
TRINITY_DN2883_c0_g1:730	si_a67	TRINITY_DN2883_c0_g1	719	739	730	-27.20	-19.14	0.703676470588235	9	1-9,739-731;15-21,725-719	10-14,730-726[SIL]	(((((((.....(((((((((&))))))))).....)))))))	GAAAAACCACCGGGAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2883_c0_g1_730_TPlot.pdf
TRINITY_DN28845_c0_g1:3432	si_a509	TRINITY_DN28845_c0_g1	3421	3442	3432	-37.30	-26.60	0.71313672922252	9	1-7,3442-3436;10-15,3432-3427;17-21,3425-3421	8-9,3435-3433[AILt];16-16,3426-3426[SIL]	(((((.((((((...(((((((&)))))))-..)))))).)))))	GCCUUCCAUUCCUUCGGGAGGC&GUCUUCC-UUGGAAUGUAAGGC	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN28845_c0_g1_3432_TPlot.pdf
TRINITY_DN28845_c0_g1:4237	si_s634	TRINITY_DN28845_c0_g1	4225	4246	4237	-38.30	-27.50	0.718015665796345	8.5	2-6,4245-4241;9-16,4238-4231;17-21,4229-4225	1-1,4246-4246[UP5];7-8,4240-4239[SIL];x-x,4230-4230[BULt]	(((((.((((((((..(((((.&.)))))..))))))))-)))))	GAGGGCCAGACGCCGGUGAAGG&UUUUCGUAGGCGUUUG-CCCUC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN28845_c0_g1_4237_TPlot.pdf
TRINITY_DN28845_c0_g1:4555	si_s316	TRINITY_DN28845_c0_g1	4544	4565	4555	-31.50	-21.20	0.673015873015873	8.5	2-8,4564-4558;9-16,4556-4549	1-1,4565-4565[UP5];x-x,4557-4557[BULt];17-21,4548-4544[UP3]	.....((((((((.(((((((.&.)))))))-)))))))).....	CAAUCGACAAGAAGGGACAGAU&UUCUGUCC-UUCUUGUUACAAA	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN28845_c0_g1_4555_TPlot.pdf
TRINITY_DN28845_c0_g1:4559	si_s313	TRINITY_DN28845_c0_g1	4547	4568	4559	-30.80	-21.20	0.688311688311688	11.5	5-11,4564-4558;12-19,4556-4549	1-4,4568-4565[UP5];x-x,4557-4557[BULt];20-21,4548-4547[UP3]	..((((((((.(((((((....&....)))))))-))))))))..	UCGACAAGAAGGGACAGAUGAG&AAAUUCUGUCC-UUCUUGUUAC	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN28845_c0_g1_4559_TPlot.pdf
TRINITY_DN28845_c0_g1:4618	si_s101	TRINITY_DN28845_c0_g1	4602	4627	4618	-32.50	-21.80	0.670769230769231	17	1-11,4627-4617;12-16,4611-4607	x-x,4616-4612[BULt];17-21,4606-4602[UP3]	.....(((((.....(((((((((((&)))))))))))-----))))).....	GUUCGUCCAAGCGACUCCGGAGCGGA&UUCGCUUCGGA-----UUGGAAAAUA	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN28845_c0_g1_4618_TPlot.pdf
TRINITY_DN28845_c0_g1:4621	si_s98	TRINITY_DN28845_c0_g1	4605	4630	4621	-34.70	-26.30	0.757925072046109	10	2-14,4629-4617;15-19,4611-4607	1-1,4630-4630[UP5];x-x,4616-4612[BULt];20-21,4606-4605[UP3]	..(((((.....(((((((((((((.&.)))))))))))))-----)))))..	CGUCCAAGCGACUCCGGAGCGGAGAU&UUCUUCGCUUCGGA-----UUGGAAA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN28845_c0_g1_4621_TPlot.pdf
TRINITY_DN28845_c0_g1:4623	si_s96	TRINITY_DN28845_c0_g1	4607	4632	4623	-37.20	-26.10	0.701612903225806	12	4-16,4629-4617;17-21,4611-4607	1-3,4632-4630[UP5];x-x,4616-4612[BULt]	(((((.....(((((((((((((...&...)))))))))))))-----)))))	UCCAAGCGACUCCGGAGCGGAGAUGC&UCUUCUUCGCUUCGGA-----UUGGA	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN28845_c0_g1_4623_TPlot.pdf
TRINITY_DN28845_c0_g1:4624	si_s95	TRINITY_DN28845_c0_g1	4608	4633	4624	-36.30	-24.10	0.663911845730028	13.5	5-17,4629-4617;18-21,4611-4608	1-4,4633-4630[UP5];x-x,4616-4612[BULt]	((((.....(((((((((((((....&....)))))))))))))-----))))	CCAAGCGACUCCGGAGCGGAGAUGCC&UUCUUCUUCGCUUCGGA-----UUGG	4	0.99998152635743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN28845_c0_g1_4624_TPlot.pdf
TRINITY_DN28845_c0_g1:4706	si_a297	TRINITY_DN28845_c0_g1	4695	4715	4706	-27.20	-17.80	0.654411764705882	17	9-21,4707-4695	1-8,4715-4708[UP5]	(((((((((((((........&........)))))))))))))	CCAGGCGGAUUUUCUUAUCUU&AUUUAAAAAAGAUUCGCUUGG	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN28845_c0_g1_4706_TPlot.pdf
TRINITY_DN2884_c0_g1:1062	si_a533	TRINITY_DN2884_c0_g1	1051	1070	1062	-39.40	-27.20	0.690355329949239	6.5	1-6,1070-1065;9-19,1063-1053	7-8,1064-1064[AILq];20-21,1052-1051[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	AAUGAACUGAUCGA-CGCGUG&CACGCGAGCGAUCGGUUCAAU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN2884_c0_g1_1062_TPlot.pdf
TRINITY_DN2884_c0_g1:1146	si_s79	TRINITY_DN2884_c0_g1	1135	1155	1146	-26.20	-18.20	0.694656488549618	8.5	2-3,1154-1153;6-12,1150-1144;15-20,1141-1136	1-1,1155-1155[UP5];4-5,1152-1151[SIL];13-14,1143-1142[SIL];21-21,1135-1135[UP3]	.((((((..(((((((..((.&.))..)))))))..)))))).	CGGAAGAUUGGAAAGAUUAAU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2884_c0_g1_1146_TPlot.pdf
TRINITY_DN2884_c0_g1:1148	si_s77	TRINITY_DN2884_c0_g1	1137	1157	1148	-25.50	-17.00	0.666666666666667	11	4-5,1154-1153;8-14,1150-1144;17-21,1141-1137	1-3,1157-1155[UP5];6-7,1152-1151[SIL];15-16,1143-1142[SIL]	(((((..(((((((..((...&...))..)))))))..)))))	GAAGAUUGGAAAGAUUAAUUA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2884_c0_g1_1148_TPlot.pdf
TRINITY_DN2884_c0_g1:1172	si_s97	TRINITY_DN2884_c0_g1	1159	1181	1172	-36.30	-23.60	0.650137741046832	11.5	1-11,1181-1171;12-16,1167-1163;18-21,1162-1159	x-x,1170-1168[BULt];17-17,x-x[BULq]	((((-(((((...(((((((((((&)))))))))))---))))).))))	UUCC-AUCUGCAAGAGCGGAGGGG&CUUCUUCGCUU---CGGAUUGGAA	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN2884_c0_g1_1172_TPlot.pdf
TRINITY_DN2884_c0_g1:1178	si_s311	TRINITY_DN2884_c0_g1	1166	1187	1178	-30.60	-20.00	0.65359477124183	9	1-2,1187-1186;4-9,1184-1179;11-13,1177-1175;14-20,1173-1167	3-3,1185-1185[SIL];10-10,1178-1178[SIL];x-x,1174-1174[BULt];21-21,1166-1166[UP3]	.(((((((.(((.((((((.((&)).)))))).)))-))))))).	UGCAAGAGCGGAGGGGAUUCUC&GAAAAUUCUGUCC-UUCUUGUU	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN2884_c0_g1_1178_TPlot.pdf
TRINITY_DN2884_c0_g1:867	si_a50	TRINITY_DN2884_c0_g1	855	876	867	-41.50	-28.50	0.686746987951807	9.5	2-4,875-873;7-12,870-865;13-21,863-855	1-1,876-876[UP5];5-6,872-871[SIL];x-x,864-864[BULt]	(((((((((.((((((..(((.&.)))..))))))-)))))))))	GAGCGAGUCGGACUUCGUGGCG&GGUCUAGGAGUC-GACUCGCUU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN2884_c0_g1_867_TPlot.pdf
TRINITY_DN2885_c0_g1:3040	si_a500	TRINITY_DN2885_c0_g1	3029	3049	3040	-34.40	-24.20	0.703488372093023	10	4-9,3046-3041;11-20,3039-3030	1-3,3049-3047[UP5];10-10,3040-3040[SIL];21-21,3029-3029[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	CCCAAGGAAGAGGGAGAAAAC&UCGUUUUUCGUCUUCCUUGGA	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN2885_c0_g1_3040_TPlot.pdf
TRINITY_DN2885_c0_g1:3128	si_s78	TRINITY_DN2885_c0_g1	3111	3137	3128	-26.20	-17.50	0.66793893129771	16	2-12,3136-3126;13-20,3119-3112	1-1,3137-3137[UP5];x-x,3125-3120[BULt];21-21,3111-3111[UP3]	.((((((((......(((((((((((.&.)))))))))))------)))))))).	UGAAGAAAGUAGUGAGGAAGAAGAAAU&UUUUUUUCUUUC------CUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2885_c0_g1_3128_TPlot.pdf
TRINITY_DN2885_c0_g1:3161	si_s89	TRINITY_DN2885_c0_g1	3150	3170	3161	-35.30	-25.40	0.719546742209632	6	3-19,3168-3152	1-2,3170-3169[UP5];20-21,3151-3150[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCAAGCGAAGAAGAGGAAAAA&CCUUUCUUCUUCUUCGCUUCG	3	0.999970930827431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2885_c0_g1_3161_TPlot.pdf
TRINITY_DN2887_c0_g1:1140	si_a21	TRINITY_DN2887_c0_g1	1129	1149	1140	-24.30	-17.70	0.728395061728395	7	1-3,1149-1147;5-8,1145-1142;10-20,1140-1130	4-4,1146-1146[SIL];9-9,1141-1141[SIL];21-21,1129-1129[UP3]	.(((((((((((.((((.(((&))).)))).))))))))))).	CUGGAGCUAAAAUUAGACAGG&CCUAUUUAUUUUUAGUUCUAA	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN2887_c0_g1_1140_TPlot.pdf
TRINITY_DN2887_c0_g1:1141	si_a20	TRINITY_DN2887_c0_g1	1130	1150	1141	-26.70	-17.60	0.659176029962547	7	2-4,1149-1147;6-9,1145-1142;11-21,1140-1130	1-1,1150-1150[UP5];5-5,1146-1146[SIL];10-10,1141-1141[SIL]	(((((((((((.((((.(((.&.))).)))).)))))))))))	UGGAGCUAAAAUUAGACAGGA&GCCUAUUUAUUUUUAGUUCUA	2	0.99997154569721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2887_c0_g1_1141_TPlot.pdf
TRINITY_DN2888_c0_g1:2606	si_s596	TRINITY_DN2888_c0_g1	2595	2615	2606	-30.40	-20.20	0.664473684210526	7.5	1-4,2615-2612;7-14,2609-2602;16-20,2600-2596	5-6,2611-2610[SIL];15-15,2601-2601[SIL];21-21,2595-2595[UP3]	.(((((.((((((((..((((&))))..)))))))).))))).	CGGGAUGCGCUUGGAGGUAUU&GAUAAAUCCAAGCGAAUCUUU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s596_TRINITY_DN2888_c0_g1_2606_TPlot.pdf
TRINITY_DN2888_c0_g1:2612	si_s590	TRINITY_DN2888_c0_g1	2601	2622	2612	-33.70	-22.90	0.679525222551929	9	1-6,2622-2617;7-10,2615-2612;13-20,2609-2602	x-x,2616-2616[BULt];11-12,2611-2610[SIL];21-21,2601-2601[UP3]	.((((((((..((((.((((((&))))))-))))..)))))))).	GCGCUUGGAGGUAUUGCGUGAU&AUCAUG-GAUAAAUCCAAGCGA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s590_TRINITY_DN2888_c0_g1_2612_TPlot.pdf
TRINITY_DN2888_c0_g1:2613	si_s589	TRINITY_DN2888_c0_g1	2602	2623	2613	-32.70	-22.90	0.700305810397553	8	2-7,2622-2617;8-11,2615-2612;14-21,2609-2602	1-1,2623-2623[UP5];x-x,2616-2616[BULt];12-13,2611-2610[SIL]	((((((((..((((.((((((.&.))))))-))))..))))))))	CGCUUGGAGGUAUUGCGUGAUA&AAUCAUG-GAUAAAUCCAAGCG	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s589_TRINITY_DN2888_c0_g1_2613_TPlot.pdf
TRINITY_DN2889_c0_g1:1096	si_a401	TRINITY_DN2889_c0_g1	1085	1105	1096	-22.60	-14.90	0.65929203539823	8.5	2-17,1104-1089	1-1,1105-1105[UP5];18-21,1088-1085[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGAGAAGCAAAACGAUUUUGA&AUAGAAUUGUUUUGUUUAUAU	3	0.99999999995512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2889_c0_g1_1096_TPlot.pdf
TRINITY_DN2889_c0_g1:1097	si_a400	TRINITY_DN2889_c0_g1	1086	1106	1097	-22.80	-14.90	0.653508771929825	9.5	3-18,1104-1089	1-2,1106-1105[UP5];19-21,1088-1086[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAGAAGCAAAACGAUUUUGAC&UAUAGAAUUGUUUUGUUUAUA	4	0.999999999971923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2889_c0_g1_1097_TPlot.pdf
TRINITY_DN2889_c0_g1:1099	si_a398	TRINITY_DN2889_c0_g1	1088	1108	1099	-22.40	-14.90	0.665178571428572	11.5	5-20,1104-1089	1-4,1108-1105[UP5];21-21,1088-1088[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAAGCAAAACGAUUUUGACUU&AAUAUAGAAUUGUUUUGUUUA	4	0.999999994228466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2889_c0_g1_1099_TPlot.pdf
TRINITY_DN28902_c0_g1:204	si_a474	TRINITY_DN28902_c0_g1	193	213	204	-23.60	-16.10	0.682203389830509	13	7-21,207-193	1-6,213-208[UP5]	(((((((((((((((......&......)))))))))))))))	UCUGUAUAGCGAUAAAAAAGA&AUGUAAUUAUUGUUAUAUAGA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN28902_c0_g1_204_TPlot.pdf
TRINITY_DN28902_c0_g1:569	si_a452	TRINITY_DN28902_c0_g1	558	578	569	-23.00	-15.20	0.660869565217391	8	1-5,578-574;7-15,572-564	6-6,573-573[SIL];16-21,563-558[UP3]	......(((((((((.(((((&))))).)))))))))......	UCAUGGAUAACAACAUUUAUC&GAUAAUUGUUGUUAUAUAUAA	4	0.999995269886044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN28902_c0_g1_569_TPlot.pdf
TRINITY_DN28902_c0_g1:708	si_a414	TRINITY_DN28902_c0_g1	697	716	708	-18.10	-12.30	0.679558011049724	5.5	1-6,716-711;8-19,710-699	7-7,x-x[BULq];20-21,698-697[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	ACUAUUUGUUUAAA-AUGAAC&GUUUAUAUUUAAAUAAAUAUA	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN28902_c0_g1_708_TPlot.pdf
TRINITY_DN28902_c0_g1:709	si_a413	TRINITY_DN28902_c0_g1	698	717	709	-18.40	-12.50	0.679347826086957	5.5	2-7,716-711;9-20,710-699	1-1,717-717[UP5];8-8,x-x[BULq];21-21,698-698[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	CUAUUUGUUUAAA-AUGAACU&UGUUUAUAUUUAAAUAAAUAU	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN28902_c0_g1_709_TPlot.pdf
TRINITY_DN28902_c0_g1:710	si_a412	TRINITY_DN28902_c0_g1	699	718	710	-18.30	-12.40	0.677595628415301	6.5	3-8,716-711;10-21,710-699	1-2,718-717[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	UAUUUGUUUAAA-AUGAACUG&UUGUUUAUAUUUAAAUAAAUA	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN28902_c0_g1_710_TPlot.pdf
TRINITY_DN28902_c0_g1:808	si_s623	TRINITY_DN28902_c0_g1	797	817	808	-36.40	-24.60	0.675824175824176	6.5	2-7,816-811;9-16,809-802;18-20,800-798	1-1,817-817[UP5];8-8,810-810[SIL];17-17,801-801[SIL];21-21,797-797[UP3]	.(((.((((((((.((((((.&.)))))).)))))))).))).	ACUAGGAAGAGAUGGUUUGGU&UCCAAGCGAUCUUUUCGUAGG	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN28902_c0_g1_808_TPlot.pdf
TRINITY_DN28902_c0_g1:809	si_s622	TRINITY_DN28902_c0_g1	798	818	809	-34.20	-24.10	0.704678362573099	7.5	3-8,816-811;10-17,809-802;19-21,800-798	1-2,818-817[UP5];9-9,810-810[SIL];18-18,801-801[SIL]	(((.((((((((.((((((..&..)))))).)))))))).)))	CUAGGAAGAGAUGGUUUGGUG&AUCCAAGCGAUCUUUUCGUAG	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN28902_c0_g1_809_TPlot.pdf
TRINITY_DN2890_c0_g1:1042	si_s312	TRINITY_DN2890_c0_g1	1031	1051	1042	-29.00	-19.70	0.679310344827586	15	8-20,1044-1032	1-7,1051-1045[UP5];21-21,1031-1031[UP3]	.(((((((((((((.......&.......))))))))))))).	CAACAAGAAGGGCAAGCCGGU&AAAAUUCUGUCCUUCUUGUUA	3	0.999999962005284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN2890_c0_g1_1042_TPlot.pdf
TRINITY_DN2890_c0_g1:1096	si_s67	TRINITY_DN2890_c0_g1	1085	1105	1096	-25.60	-16.68	0.6515625	10	1-3,1105-1103;7-21,1099-1085	4-6,1102-1100[SIL]	(((((((((((((((...(((&)))...)))))))))))))))	AGGAAGGAGAAUGGGUCAUGC&GCAACUUCUAUUUUUUUUCUU	2	0.999999999368766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN2890_c0_g1_1096_TPlot.pdf
TRINITY_DN2890_c0_g1:1209	si_a332	TRINITY_DN2890_c0_g1	1198	1218	1209	-30.60	-20.20	0.660130718954248	9.5	2-7,1217-1212;10-20,1209-1199	1-1,1218-1218[UP5];8-9,1211-1210[SIL];21-21,1198-1198[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	AUUUGGGACAGGCUAUGAAGG&UUUUUAUUCCUUGUCCCGAAA	2	0.999392074706159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN2890_c0_g1_1209_TPlot.pdf
TRINITY_DN2890_c0_g1:1210	si_a331	TRINITY_DN2890_c0_g1	1199	1219	1210	-30.60	-21.60	0.705882352941177	8.5	1-8,1219-1212;11-21,1209-1199	9-10,1211-1210[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	UUUGGGACAGGCUAUGAAGGA&UUUUUUAUUCCUUGUCCCGAA	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN2890_c0_g1_1210_TPlot.pdf
TRINITY_DN2890_c0_g1:1212	si_a329	TRINITY_DN2890_c0_g1	1201	1221	1212	-29.60	-19.80	0.668918918918919	10	2-10,1220-1212;13-21,1209-1201	1-1,1221-1221[UP5];11-12,1211-1210[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	UGGGACAGGCUAUGAAGGAGG&AUUUUUUUAUUCCUUGUCCCG	3	0.999999778889403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN2890_c0_g1_1212_TPlot.pdf
TRINITY_DN2890_c0_g1:190	si_a324	TRINITY_DN2890_c0_g1	176	198	190	-27.50	-18.00	0.654545454545455	9	1-5,198-194;7-13,193-187;14-21,183-176	6-6,x-x[BULq];x-x,186-184[BULt]	((((((((...(((((((-(((((&))))).)))))))---))))))))	CAAGGAAUCACAGGGAAG-CAUGG&CCAUGAUUUUUUU---AUUCCUUG	4	0.999999511643789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN2890_c0_g1_190_TPlot.pdf
TRINITY_DN28916_c1_g1:268	si_a860	TRINITY_DN28916_c1_g1	257	277	268	-24.30	-17.40	0.716049382716049	7	3-16,275-262;18-21,260-257	1-2,277-276[UP5];17-17,261-261[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AGUCAUUAGUGGUUGGAUUAA&GAAAUCCAAUUAUUAAAGAUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN28916_c1_g1_268_TPlot.pdf
TRINITY_DN28917_c0_g1:1524	si_s892	TRINITY_DN28917_c0_g1	1513	1533	1524	-29.50	-20.20	0.684745762711864	13.5	5-18,1529-1516	1-4,1533-1530[UP5];19-21,1515-1513[UP3]	...((((((((((((((....&....))))))))))))))...	ACGGAGGAGAGAGUCUGACAG&UAAAUAGGCUUUCUCUUCAAU	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN28917_c0_g1_1524_TPlot.pdf
TRINITY_DN28917_c0_g2:999	si_a573	TRINITY_DN28917_c0_g2	988	1008	999	-28.70	-19.50	0.679442508710801	7	1-8,1008-1001;10-19,999-990	9-9,1000-1000[SIL];20-21,989-988[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UGGUUACAAAUACAUGGUUCA&UGAAUCGUAUGUUUGUAACAA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN28917_c0_g2_999_TPlot.pdf
TRINITY_DN2893_c0_g1:1209	si_a784	TRINITY_DN2893_c0_g1	1198	1217	1209	-24.70	-16.50	0.668016194331984	8	1-2,1217-1216;4-16,1215-1203	3-3,x-x[BULq];17-21,1202-1198[UP3]	.....(((((((((((((-((&)).))))))))))))).....	AUCAAAGAAGAAUAGAAG-GU&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999979913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2893_c0_g1_1209_TPlot.pdf
TRINITY_DN2894_c0_g1:2935	si_s254	TRINITY_DN2894_c0_g1	2916	2944	2935	-29.40	-19.60	0.666666666666667	21.5	2-10,2943-2935;11-21,2926-2916	1-1,2944-2944[UP5];x-x,2934-2927[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	UUUGAGUGAUGCGAUUUUUUGUUGGGGAU&UUUCCCGAUA--------UAUUACUCAAA	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN2894_c0_g1_2935_TPlot.pdf
TRINITY_DN28965_c0_g1:1121	si_s261	TRINITY_DN28965_c0_g1	1105	1130	1121	-23.60	-17.10	0.724576271186441	14	2-10,1129-1121;11-21,1115-1105	1-1,1130-1130[UP5];x-x,1120-1116[BULt]	(((((((((((.....(((((((((.&.)))))))))-----)))))))))))	CGAUUUUUUUGUAGAAGGUAGUGUAA&AUAUAUUACU-----CAAAAAAAUCG	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s261_TRINITY_DN28965_c0_g1_1121_TPlot.pdf
TRINITY_DN28966_c0_g3:763	si_a815	TRINITY_DN28966_c0_g3	750	772	763	-33.80	-23.60	0.698224852071006	5	2-14,771-759;15-17,756-754;20-21,751-750	1-1,772-772[UP5];x-x,758-757[BULt];18-19,753-752[SIL]	((..(((..(((((((((((((.&.)))))))))))))--)))..))	CUCGCCUUCUUCUUCUUCUUCGA&GCGAAGAAGAAGAA--AGGAAAG	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a815_TRINITY_DN28966_c0_g3_763_TPlot.pdf
TRINITY_DN2896_c0_g2:445	si_a221	TRINITY_DN2896_c0_g2	434	452	445	-25.20	-16.40	0.650793650793651	5	1-7,452-446;10-21,445-434	8-9,x-x[BULq]	((((((((((((--(((((((&)))))))..))))))))))))	UUGUAGAGACAU--GUUUAAU&AUUAAACUCAUGUUUCUAUAA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN2896_c0_g2_445_TPlot.pdf
TRINITY_DN2897_c0_g1:314	si_s85	TRINITY_DN2897_c0_g1	296	324	314	-33.80	-22.10	0.653846153846154	11.5	1-6,324-319;7-14,317-310;15-21,302-296	x-x,318-318[BULt];x-x,309-303[BULt]	(((((((.......((((((((.((((((&))))))-))))))))-------)))))))	GUGGAGACUGACCAGGAAGAAGCGGAAAG&CUUUCC-UUUCUUCU-------UCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN2897_c0_g1_314_TPlot.pdf
TRINITY_DN2897_c0_g1:3254	si_a298	TRINITY_DN2897_c0_g1	3238	3263	3254	-28.10	-18.50	0.658362989323843	14	2-12,3262-3252;13-20,3246-3239	1-1,3263-3263[UP5];x-x,3251-3247[BULt];21-21,3238-3238[UP3]	.((((((((.....(((((((((((.&.)))))))))))-----)))))))).	CCUAGGCGACGAUGAUCUUUUUUAGU&UUUAAAAAAGAU-----UCGCUUGGA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN2897_c0_g1_3254_TPlot.pdf
TRINITY_DN2897_c0_g1:3665	si_s73	TRINITY_DN2897_c0_g1	3654	3674	3665	-24.00	-16.60	0.691666666666667	10	2-7,3673-3668;9-18,3666-3657	1-1,3674-3674[UP5];8-8,3667-3667[SIL];19-21,3656-3654[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	GGCGGAGGGAAGACGAAUGGU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2897_c0_g1_3665_TPlot.pdf
TRINITY_DN2897_c0_g1:3669	si_a498	TRINITY_DN2897_c0_g1	3658	3686	3669	-33.50	-21.90	0.653731343283582	20.5	1-2,3686-3685;4-8,3683-3679;9-20,3670-3659	3-3,3684-3684[SIL];x-x,3678-3671[BULt];21-21,3658-3658[UP3]	.((((((((((((........(((((.((&)).)))))--------)))))))))))).	GAGGGAAGACGAAUGGUUUGGGAACGUCA&UGUCGUUU--------UUCGUCUUCCUUG	2	0.999999999634946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN2897_c0_g1_3669_TPlot.pdf
TRINITY_DN2897_c0_g1:3670	si_a497	TRINITY_DN2897_c0_g1	3659	3687	3670	-32.00	-21.40	0.66875	20.5	2-3,3686-3685;5-9,3683-3679;10-21,3670-3659	1-1,3687-3687[UP5];4-4,3684-3684[SIL];x-x,3678-3671[BULt]	((((((((((((........(((((.((.&.)).)))))--------))))))))))))	AGGGAAGACGAAUGGUUUGGGAACGUCAG&AUGUCGUUU--------UUCGUCUUCCUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2897_c0_g1_3670_TPlot.pdf
TRINITY_DN2897_c0_g1:591	si_s79	TRINITY_DN2897_c0_g1	579	600	591	-26.20	-18.10	0.690839694656489	10.5	5-13,596-588;14-21,586-579	1-4,600-597[UP5];x-x,587-587[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AAGAAGGACAGGAAAGGGCGGG&UUUUUUCUUUCCU-UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2897_c0_g1_591_TPlot.pdf
TRINITY_DN2897_c0_g1:609	si_a496	TRINITY_DN2897_c0_g1	598	619	609	-32.40	-21.78	0.672222222222222	14.5	1-6,619-614;12-21,607-598	7-11,613-608[AILt]	((((((((((......((((((&))))))-.....))))))))))	GGGGAGACGAUUUUGAGACGUG&UAUGUC-GUUUUUCGUCUUCCU	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN2897_c0_g1_609_TPlot.pdf
TRINITY_DN2897_c0_g1:612	si_a497	TRINITY_DN2897_c0_g1	597	622	612	-32.00	-21.50	0.671875	16	2-4,621-619;5-10,617-612;11-20,607-598	1-1,622-622[UP5];x-x,618-618[BULt];x-x,611-608[BULt];21-21,597-597[UP3]	.((((((((((....((((((.(((.&.)))-))))))----)))))))))).	CGGGGAGACGAUUUUGAGACGUGCAA&AUGU-CGUUUU----UCGUCUUCCUU	3	0.999999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN2897_c0_g1_612_TPlot.pdf
TRINITY_DN2897_c0_g1:645	si_a758	TRINITY_DN2897_c0_g1	634	654	645	-34.00	-23.60	0.694117647058824	9	1-16,654-639	17-21,638-634[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCGCUGAGAGCUCGAAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN2897_c0_g1_645_TPlot.pdf
TRINITY_DN2897_c0_g1:6491	si_a153	TRINITY_DN2897_c0_g1	6480	6501	6491	-28.70	-19.70	0.686411149825784	8	1-5,6501-6497;6-8,6495-6493;10-18,6491-6483	x-x,6496-6496[BULt];9-9,6492-6492[SIL];19-21,6482-6480[UP3]	...(((((((((.(((.(((((&)))))-))).)))))))))...	AACGAUUGACCUCAAGUACAAC&GUUGU-UUUAAGGUCAAUCUAU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN2897_c0_g1_6491_TPlot.pdf
TRINITY_DN2897_c0_g1:6494	si_a150	TRINITY_DN2897_c0_g1	6483	6504	6494	-29.90	-24.00	0.802675585284281	5	1-8,6504-6497;9-11,6495-6493;13-21,6491-6483	x-x,6496-6496[BULt];12-12,6492-6492[SIL]	(((((((((.(((.((((((((&))))))))-))).)))))))))	GAUUGACCUCAAGUACAACAAC&GUUGUUGU-UUUAAGGUCAAUC	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN2897_c0_g1_6494_TPlot.pdf
TRINITY_DN2897_c0_g1:6497	si_a148	TRINITY_DN2897_c0_g1	6485	6506	6497	-30.30	-19.80	0.653465346534653	7	3-10,6504-6497;11-13,6495-6493;15-21,6491-6485	1-2,6506-6505[UP5];x-x,6496-6496[BULt];14-14,6492-6492[SIL]	(((((((.(((.((((((((..&..))))))))-))).)))))))	UUGACCUCAAGUACAACAACCU&UCGUUGUUGU-UUUAAGGUCAA	4	0.999999982404815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN2897_c0_g1_6497_TPlot.pdf
TRINITY_DN2897_c0_g1:6645	si_a722	TRINITY_DN2897_c0_g1	6634	6655	6645	-34.70	-23.60	0.680115273775216	9	2-7,6654-6649;8-18,6647-6637	1-1,6655-6655[UP5];x-x,6648-6648[BULt];19-21,6636-6634[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	CGUGGUGCUCGAGUCGAUGAUG&AAUCGUU-ACUCGGGCAUCUUU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN2897_c0_g1_6645_TPlot.pdf
TRINITY_DN2897_c0_g1:6646	si_a721	TRINITY_DN2897_c0_g1	6635	6656	6646	-35.10	-23.60	0.672364672364672	10	3-8,6654-6649;9-19,6647-6637	1-2,6656-6655[UP5];x-x,6648-6648[BULt];20-21,6636-6635[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	GUGGUGCUCGAGUCGAUGAUGC&UAAUCGUU-ACUCGGGCAUCUU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN2897_c0_g1_6646_TPlot.pdf
TRINITY_DN2897_c0_g1:6670	si_s847	TRINITY_DN2897_c0_g1	6659	6683	6670	-39.00	-25.40	0.651282051282051	11	2-7,6682-6677;8-15,6672-6665;16-18,6663-6661;20-21,6660-6659	1-1,6683-6683[UP5];x-x,6676-6673[BULt];x-x,6664-6664[BULt];19-19,x-x[BULq]	((-(((.((((((((....((((((.&.))))))----))))))))-))).))	CU-GGACGUCGACUCGAGAGCUUCUG&AAGAAGC----GAGUCGAC-UCCUAG	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s847_TRINITY_DN2897_c0_g1_6670_TPlot.pdf
TRINITY_DN2897_c0_g1:6671	si_s846	TRINITY_DN2897_c0_g1	6659	6684	6671	-37.30	-25.10	0.672922252010724	14	3-8,6682-6677;9-16,6672-6665;17-19,6663-6661	1-2,6684-6683[UP5];x-x,6676-6673[BULt];x-x,6664-6664[BULt];20-21,6660-6659[UP3]	..(((.((((((((....((((((..&..))))))----))))))))-)))..	CUGGACGUCGACUCGAGAGCUUCUGU&AAAGAAGC----GAGUCGAC-UCCUA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN2897_c0_g1_6671_TPlot.pdf
TRINITY_DN2897_c0_g1:6768	si_s631	TRINITY_DN2897_c0_g1	6757	6780	6768	-36.00	-23.80	0.661111111111111	10	2-4,6779-6777;5-8,6774-6771;9-20,6769-6758	1-1,6780-6780[UP5];x-x,6776-6775[BULt];x-x,6770-6770[BULt];21-21,6757-6757[UP3]	.((((((((((((.((((..(((.&.)))--))))-)))))))))))).	UGCAGGCGCCUACAGGAAUCAGAA&AUCU--UUUC-GUAGGCGUUUGCC	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN2897_c0_g1_6768_TPlot.pdf
TRINITY_DN2897_c0_g1:6769	si_s630	TRINITY_DN2897_c0_g1	6758	6781	6769	-35.60	-23.80	0.668539325842697	11	3-5,6779-6777;6-9,6774-6771;10-21,6769-6758	1-2,6781-6780[UP5];x-x,6776-6775[BULt];x-x,6770-6770[BULt]	((((((((((((.((((..(((..&..)))--))))-))))))))))))	GCAGGCGCCUACAGGAAUCAGAAC&GAUCU--UUUC-GUAGGCGUUUGC	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN2897_c0_g1_6769_TPlot.pdf
TRINITY_DN2897_c0_g1:6772	si_s628	TRINITY_DN2897_c0_g1	6760	6783	6772	-35.40	-23.30	0.65819209039548	10	1-3,6783-6781;5-7,6779-6777;8-11,6774-6771;12-21,6769-6760	4-4,6780-6780[SIL];x-x,6776-6775[BULt];x-x,6770-6770[BULt]	((((((((((.((((..(((.(((&))).)))--))))-))))))))))	AGGCGCCUACAGGAAUCAGAACGC&GCGAUCU--UUUC-GUAGGCGUUU	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN2897_c0_g1_6772_TPlot.pdf
TRINITY_DN2897_c0_g1:678	si_a324	TRINITY_DN2897_c0_g1	666	690	678	-27.50	-18.40	0.669090909090909	9	1-3,690-688;4-17,684-671;18-20,669-667	x-x,687-685[BULt];x-x,670-670[BULt];21-21,666-666[UP3]	.(((.((((((((((((((...(((&)))---))))))))))))))-))).	AAAGAGAAUAAAAAGAUCAAGCUGG&CCA---UGAUUUUUUUAUUC-CUUG	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN2897_c0_g1_678_TPlot.pdf
TRINITY_DN2897_c0_g1:679	si_a323	TRINITY_DN2897_c0_g1	667	691	679	-26.80	-18.10	0.675373134328358	9	2-4,690-688;5-18,684-671;19-21,669-667	1-1,691-691[UP5];x-x,687-685[BULt];x-x,670-670[BULt]	(((.((((((((((((((...(((.&.)))---))))))))))))))-)))	AAGAGAAUAAAAAGAUCAAGCUGGG&UCCA---UGAUUUUUUUAUUC-CUU	4	0.999997234426688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN2897_c0_g1_679_TPlot.pdf
TRINITY_DN2897_c0_g1:6792	si_s212	TRINITY_DN2897_c0_g1	6781	6802	6792	-38.70	-25.38	0.655813953488372	10	1-4,6802-6799;5-12,6797-6790;16-21,6786-6781	x-x,6798-6798[BULt];13-15,6789-6787[SIL]	((((((...((((((((.((((&))))-))))))))...))))))	CGCGGUGAAGGGCGCGAGUUGG&CCAG-UUGUGUUCGAAACCGCG	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN2897_c0_g1_6792_TPlot.pdf
TRINITY_DN2898_c0_g1:497	si_s70	TRINITY_DN2898_c0_g1	486	506	497	-25.80	-17.30	0.670542635658915	6.5	3-19,504-488	1-2,506-505[UP5];20-21,487-486[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAGAAGAAAGAAAAUAGAAUG&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2898_c0_g1_497_TPlot.pdf
TRINITY_DN2898_c0_g1:591	si_a786	TRINITY_DN2898_c0_g1	580	601	591	-26.60	-18.30	0.68796992481203	5	1-9,601-593;10-19,591-582	x-x,592-592[BULt];20-21,581-580[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUGAAGUAGAAACAAUAGAAGA&UCUUCUAUU-UUUCUAUUUUCC	4	0.999999998459931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN2898_c0_g1_591_TPlot.pdf
TRINITY_DN2898_c0_g1:594	si_a784	TRINITY_DN2898_c0_g1	582	603	594	-24.70	-18.50	0.748987854251012	6	3-11,601-593;12-21,591-582	1-2,603-602[UP5];x-x,592-592[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	GAAGUAGAAACAAUAGAAGAAU&ACUCUUCUAUU-UUUCUAUUUU	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2898_c0_g1_594_TPlot.pdf
TRINITY_DN2898_c0_g1:595	si_a783	TRINITY_DN2898_c0_g1	583	604	595	-24.70	-17.40	0.704453441295547	7.5	4-12,601-593;13-21,591-583	1-3,604-602[UP5];x-x,592-592[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	AAGUAGAAACAAUAGAAGAAUU&AACUCUUCUAUU-UUUCUAUUU	3	0.999999941876609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN2898_c0_g1_595_TPlot.pdf
TRINITY_DN2898_c0_g1:726	si_s482	TRINITY_DN2898_c0_g1	715	735	726	-21.20	-14.50	0.683962264150943	9.5	1-13,735-723	14-21,722-715[UP3]	........(((((((((((((&)))))))))))))........	AAUUAGUUGUAGAUAUAGGAU&AUCCUAUAUUUAUUUAAAUAU	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN2898_c0_g1_726_TPlot.pdf
TRINITY_DN28994_c0_g1:184	si_s525	TRINITY_DN28994_c0_g1	170	193	184	-24.00	-16.62	0.6925	6.5	1-14,193-180;17-20,174-171	15-16,179-175[AILt];21-21,170-170[UP3]	.((((.....((((((((((((((&))))))))))))))---..)))).	CUCAGUGCUCAUGAUUUCGAAUUA&UAAUUCGAAAUCAU---UUUUGAU	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN28994_c0_g1_184_TPlot.pdf
TRINITY_DN28994_c0_g1:185	si_s524	TRINITY_DN28994_c0_g1	171	194	185	-23.90	-16.72	0.699581589958159	6.5	2-15,193-180;18-21,174-171	1-1,194-194[UP5];16-17,179-175[AILt]	((((.....((((((((((((((.&.))))))))))))))---..))))	UCAGUGCUCAUGAUUUCGAAUUAU&UUAAUUCGAAAUCAU---UUUUGA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN28994_c0_g1_185_TPlot.pdf
TRINITY_DN28994_c0_g1:186	si_s523	TRINITY_DN28994_c0_g1	175	195	186	-24.50	-16.20	0.661224489795918	8	3-16,193-180	1-2,195-194[UP5];17-21,179-175[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGCUCAUGAUUUCGAAUUAUU&CUUAAUUCGAAAUCAUUUUUG	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN28994_c0_g1_186_TPlot.pdf
TRINITY_DN2899_c0_g1:1356	si_s629	TRINITY_DN2899_c0_g1	1345	1365	1356	-34.60	-23.50	0.679190751445087	7.5	1-1,1365-1365;3-9,1363-1357;11-16,1355-1350;18-21,1348-1345	2-2,1364-1364[SIL];10-10,1356-1356[SIL];17-17,1349-1349[SIL]	((((.((((((.(((((((.(&).))))))).)))))).))))	CGAAGGCCUACUGGAAGAUGG&CGAUCUUUUCGUAGGCGUUUG	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN2899_c0_g1_1356_TPlot.pdf
TRINITY_DN2899_c0_g1:549	si_a16	TRINITY_DN2899_c0_g1	538	558	549	-26.30	-17.10	0.650190114068441	7	1-15,558-544	16-21,543-538[UP3]	......(((((((((((((((&)))))))))))))))......	AGAUUUAAUAAAUAGGUUUUC&GAAAGCCUAUUUAUUUUUAGU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN2899_c0_g1_549_TPlot.pdf
TRINITY_DN2899_c0_g1:550	si_a15	TRINITY_DN2899_c0_g1	539	559	550	-26.20	-18.20	0.694656488549618	6	1-16,559-544	17-21,543-539[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUUUAAUAAAUAGGUUUUCU&AGAAAGCCUAUUUAUUUUUAG	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN2899_c0_g1_550_TPlot.pdf
TRINITY_DN289_c0_g1:1478	si_a346	TRINITY_DN289_c0_g1	1467	1487	1478	-25.90	-17.60	0.67953667953668	7	1-12,1487-1476;15-18,1473-1470	13-14,1475-1474[SIL];19-21,1469-1467[UP3]	...((((..((((((((((((&))))))))))))..))))...	CAAGGGAGGAAUAUUUUUGGG&CCCGAAAAUAUUAAUUCUAUU	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN289_c0_g1_1478_TPlot.pdf
TRINITY_DN289_c0_g1:1479	si_a345	TRINITY_DN289_c0_g1	1468	1488	1479	-26.90	-17.60	0.654275092936803	7	2-13,1487-1476;16-19,1473-1470	1-1,1488-1488[UP5];14-15,1475-1474[SIL];20-21,1469-1468[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	AAGGGAGGAAUAUUUUUGGGC&UCCCGAAAAUAUUAAUUCUAU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN289_c0_g1_1479_TPlot.pdf
TRINITY_DN289_c0_g1:1937	si_s773	TRINITY_DN289_c0_g1	1926	1946	1937	-23.10	-16.00	0.692640692640693	13	5-17,1942-1930	1-4,1946-1943[UP5];18-21,1929-1926[UP3]	....(((((((((((((....&....)))))))))))))....	AUUAGUGGCAAUAGUAGGAGU&UUAAUUACUAUUGCUAUAAAA	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN289_c0_g1_1937_TPlot.pdf
TRINITY_DN289_c0_g1:1938	si_s772	TRINITY_DN289_c0_g1	1927	1947	1938	-23.20	-16.00	0.689655172413793	14	6-18,1942-1930	1-5,1947-1943[UP5];19-21,1929-1927[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUAGUGGCAAUAGUAGGAGUC&AUUAAUUACUAUUGCUAUAAA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN289_c0_g1_1938_TPlot.pdf
TRINITY_DN289_c0_g1:1940	si_s770	TRINITY_DN289_c0_g1	1929	1948	1940	-26.60	-18.80	0.706766917293233	9	2-5,1947-1944;8-20,1942-1930	1-1,1948-1948[UP5];6-7,1943-1943[AILq];21-21,1929-1929[UP3]	.(((((((((((((.-((((.&.))))..))))))))))))).	AGUGGCAAUAGUAGG-AGUCC&CGAUUAAUUACUAUUGCUAUA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN289_c0_g1_1940_TPlot.pdf
TRINITY_DN289_c0_g1:2744	si_a402	TRINITY_DN289_c0_g1	2733	2753	2744	-22.40	-15.30	0.683035714285714	8.5	1-9,2753-2745;11-16,2743-2738	10-10,2744-2744[SIL];17-21,2737-2733[UP3]	.....((((((.(((((((((&))))))))).)))))).....	AUGACAGACAAUGCAAUUCUA&UAGAAUUGUUUUGUUUAUAUU	4	0.99999994174196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN289_c0_g1_2744_TPlot.pdf
TRINITY_DN289_c0_g1:2747	si_a399	TRINITY_DN289_c0_g1	2736	2756	2747	-22.60	-15.30	0.676991150442478	9.5	4-12,2753-2745;14-19,2743-2738	1-3,2756-2754[UP5];13-13,2744-2744[SIL];20-21,2737-2736[UP3]	..((((((.(((((((((...&...))))))))).))))))..	ACAGACAAUGCAAUUCUAAUC&AUAUAGAAUUGUUUUGUUUAU	4	0.999999904387963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN289_c0_g1_2747_TPlot.pdf
TRINITY_DN289_c0_g1:2770	si_s824	TRINITY_DN289_c0_g1	2759	2779	2770	-21.20	-13.90	0.655660377358491	7	1-14,2779-2766	15-21,2765-2759[UP3]	.......((((((((((((((&)))))))))))))).......	UGAGGGCUUUUCAUUAUUAAG&CUUAAUAAUGAAAAACAAUUU	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s824_TRINITY_DN289_c0_g1_2770_TPlot.pdf
TRINITY_DN289_c0_g1:3475	si_a100	TRINITY_DN289_c0_g1	3465	3484	3475	-29.70	-20.30	0.683501683501683	4	2-17,3483-3468;19-21,3467-3465	1-1,3484-3484[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	CGU-UUUUAUUUUCGUUACUC&AGGUAACGAAGAUAAAAUACG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a100_TRINITY_DN289_c0_g1_3475_TPlot.pdf
TRINITY_DN289_c0_g1:449	si_a786	TRINITY_DN289_c0_g1	438	458	449	-26.60	-19.90	0.74812030075188	6	2-8,457-451;10-17,449-442;19-21,440-438	1-1,458-458[UP5];9-9,450-450[SIL];18-18,441-441[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	GGGCGAUAGAAAUGUAGAAGG&UCUUCUAUUUUUCUAUUUUCC	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN289_c0_g1_449_TPlot.pdf
TRINITY_DN28_c0_g1:3028	si_a722	TRINITY_DN28_c0_g1	3016	3037	3028	-34.70	-23.30	0.671469740634006	10.5	2-7,3036-3031;9-11,3029-3027;12-18,3025-3019	1-1,3037-3037[UP5];8-8,3030-3030[SIL];x-x,3026-3026[BULt];19-21,3018-3016[UP3]	...(((((((.(((.((((((.&.)))))).)))-)))))))...	GACGGUGCCCAGGGCGACGAUG&AAUCGUUACUC-GGGCAUCUUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN28_c0_g1_3028_TPlot.pdf
TRINITY_DN28_c0_g1:3029	si_a721	TRINITY_DN28_c0_g1	3017	3038	3029	-35.10	-23.30	0.663817663817664	11.5	3-8,3036-3031;10-12,3029-3027;13-19,3025-3019	1-2,3038-3037[UP5];9-9,3030-3030[SIL];x-x,3026-3026[BULt];20-21,3018-3017[UP3]	..(((((((.(((.((((((..&..)))))).)))-)))))))..	ACGGUGCCCAGGGCGACGAUGG&UAAUCGUUACUC-GGGCAUCUU	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN28_c0_g1_3029_TPlot.pdf
TRINITY_DN28_c0_g1:3030	si_a720	TRINITY_DN28_c0_g1	3018	3039	3030	-35.30	-23.30	0.660056657223796	11.5	4-9,3036-3031;11-13,3029-3027;14-20,3025-3019	1-3,3039-3037[UP5];10-10,3030-3030[SIL];x-x,3026-3026[BULt];21-21,3018-3018[UP3]	.(((((((.(((.((((((...&...)))))).)))-))))))).	CGGUGCCCAGGGCGACGAUGGU&AUAAUCGUUACUC-GGGCAUCU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN28_c0_g1_3030_TPlot.pdf
TRINITY_DN28_c0_g1:3031	si_a719	TRINITY_DN28_c0_g1	3019	3040	3031	-34.60	-23.10	0.667630057803468	8	1-3,3040-3038;5-10,3036-3031;12-14,3029-3027;15-21,3025-3019	4-4,3037-3037[SIL];11-11,3030-3030[SIL];x-x,3026-3026[BULt]	(((((((.(((.((((((.(((&))).)))))).)))-)))))))	GGUGCCCAGGGCGACGAUGGUU&AAUAAUCGUUACUC-GGGCAUC	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN28_c0_g1_3031_TPlot.pdf
TRINITY_DN28_c0_g1:3035	si_a142	TRINITY_DN28_c0_g1	3024	3044	3035	-23.50	-18.00	0.765957446808511	10	2-19,3043-3026	1-1,3044-3044[UP5];20-21,3025-3024[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CCAGGGCGACGAUGGUUGGUG&AAUUAAUCGUUGUUGUUUUAA	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN28_c0_g1_3035_TPlot.pdf
TRINITY_DN28_c0_g1:3036	si_a141	TRINITY_DN28_c0_g1	3025	3045	3036	-23.80	-18.00	0.756302521008403	11	3-20,3043-3026	1-2,3045-3044[UP5];21-21,3025-3025[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAGGGCGACGAUGGUUGGUGG&UAAUUAAUCGUUGUUGUUUUA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN28_c0_g1_3036_TPlot.pdf
TRINITY_DN28_c0_g1:3039	si_a138	TRINITY_DN28_c0_g1	3028	3048	3039	-26.30	-18.30	0.695817490494297	11.5	3-4,3046-3045;6-21,3043-3028	1-2,3048-3047[UP5];5-5,3044-3044[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	GGCGACGAUGGUUGGUGGCAA&UAGUAAUUAAUCGUUGUUGUU	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN28_c0_g1_3039_TPlot.pdf
TRINITY_DN28_c0_g1:3040	si_a137	TRINITY_DN28_c0_g1	3029	3049	3040	-26.50	-17.80	0.671698113207547	13	4-5,3046-3045;7-21,3043-3029	1-3,3049-3047[UP5];6-6,3044-3044[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	GCGACGAUGGUUGGUGGCAAA&AUAGUAAUUAAUCGUUGUUGU	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN28_c0_g1_3040_TPlot.pdf
TRINITY_DN28_c0_g1:4048	si_a658	TRINITY_DN28_c0_g1	4037	4058	4048	-33.40	-22.40	0.67065868263473	9	2-8,4057-4051;10-19,4048-4039	1-1,4058-4058[UP5];9-9,4050-4049[AILt];20-21,4038-4037[UP3]	..((((((((((..(((((((.&.)))))))-.))))))))))..	CCUCGAUGGGCAAAUUCUCGAC&AUCGGGAA-AUGCCUAUUGAUU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN28_c0_g1_4048_TPlot.pdf
TRINITY_DN28_c0_g1:4049	si_a657	TRINITY_DN28_c0_g1	4038	4059	4049	-33.80	-22.40	0.662721893491124	10	3-9,4057-4051;11-20,4048-4039	1-2,4059-4058[UP5];10-10,4050-4049[AILt];21-21,4038-4038[UP3]	.((((((((((..(((((((..&..)))))))-.)))))))))).	CUCGAUGGGCAAAUUCUCGACC&UAUCGGGAA-AUGCCUAUUGAU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN28_c0_g1_4049_TPlot.pdf
TRINITY_DN28_c0_g1:4051	si_a656	TRINITY_DN28_c0_g1	4039	4060	4051	-33.80	-22.30	0.659763313609467	11	4-10,4057-4051;12-21,4048-4039	1-3,4060-4058[UP5];11-11,4050-4049[AILt]	((((((((((..(((((((...&...)))))))-.))))))))))	UCGAUGGGCAAAUUCUCGACCG&AUAUCGGGAA-AUGCCUAUUGA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN28_c0_g1_4051_TPlot.pdf
TRINITY_DN28_c0_g1:5211	si_s95	TRINITY_DN28_c0_g1	5198	5220	5211	-36.30	-23.70	0.652892561983471	8.5	1-11,5220-5210;14-16,5207-5205;18-21,5201-5198	12-13,5209-5208[SIL];17-17,5204-5202[AILt]	((((...(((..(((((((((((&)))))))))))..)))--.))))	CCGACGACCGCUGCGGAGAAGGA&UUCUUCUUCGCUUCGG--AUUGG	4	0.999999511643789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN28_c0_g1_5211_TPlot.pdf
TRINITY_DN28_c0_g1:5213	si_s93	TRINITY_DN28_c0_g1	5202	5223	5213	-34.80	-22.80	0.655172413793104	8	1-5,5223-5219;6-13,5217-5210;16-18,5207-5205	x-x,5218-5218[BULt];14-15,5209-5208[SIL];19-21,5204-5202[UP3]	...(((..((((((((.(((((&)))))-))))))))..)))...	CGACCGCUGCGGAGAAGGAAGA&UCUUC-UUCUUCGCUUCGGAUU	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN28_c0_g1_5213_TPlot.pdf
TRINITY_DN28_c0_g1:861	si_s67	TRINITY_DN28_c0_g1	850	870	861	-25.60	-19.20	0.75	8	2-11,869-860;13-19,858-852	1-1,870-870[UP5];12-12,859-859[SIL];20-21,851-850[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	GCGAGAAGAUGUGGAAGUUGA&GCAACUUCUAUUUUUUUUCUU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN28_c0_g1_861_TPlot.pdf
TRINITY_DN2900_c0_g1:1051	si_s83	TRINITY_DN2900_c0_g1	1041	1060	1051	-30.90	-26.40	0.854368932038835	4	1-13,1060-1048;15-21,1047-1041	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	GGAGGAG-AGAGAGGAAAGGA&UUCUUUCCUUUCUUCUUCUUC	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN2900_c0_g1_1051_TPlot.pdf
TRINITY_DN2900_c0_g1:1053	si_s81	TRINITY_DN2900_c0_g1	1041	1062	1053	-28.90	-23.80	0.823529411764706	7	3-15,1060-1048;16-21,1046-1041	1-2,1062-1061[UP5];x-x,1047-1047[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	GGAGGAGAGAGAGGAAAGGACU&UUUUCUUUCCUUUCU-UCUUCU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2900_c0_g1_1053_TPlot.pdf
TRINITY_DN2900_c0_g1:81	si_s444	TRINITY_DN2900_c0_g1	70	94	81	-22.80	-14.84	0.650877192982456	16	1-8,94-87;12-21,79-70	9-11,86-80[AILt]	((((((((((.......((((((((&))))))))----...))))))))))	AUUGUUGUUGAACAGUGAUAAUGUG&CAUAUUAU----AUAUAACAACAAU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN2900_c0_g1_81_TPlot.pdf
TRINITY_DN2900_c0_g1:92	si_s3	TRINITY_DN2900_c0_g1	83	101	92	-21.20	-14.60	0.688679245283019	7.5	1-10,101-92;13-21,91-83	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	AGUGAUAAU--GUGGUGUAAA&UUUAUAUUACUUAUUAUUACU	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2900_c0_g1_92_TPlot.pdf
TRINITY_DN2901_c0_g1:3621	si_a501	TRINITY_DN2901_c0_g1	3610	3630	3621	-33.50	-22.40	0.66865671641791	8	2-5,3629-3626;7-8,3624-3623;10-16,3621-3615;18-21,3613-3610	1-1,3630-3630[UP5];6-6,3625-3625[SIL];9-9,3622-3622[SIL];17-17,3614-3614[SIL]	((((.(((((((.((.((((.&.)))).)).))))))).))))	UUCCUAGGAAGAGGAUGAGCC&CGUUUUUCGUCUUCCUUGGAA	4	0.999999999692191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN2901_c0_g1_3621_TPlot.pdf
TRINITY_DN2901_c0_g1:3971	si_a763	TRINITY_DN2901_c0_g1	3960	3980	3971	-28.80	-19.10	0.663194444444445	8.5	1-16,3980-3965	17-21,3964-3960[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUUACGAUCGAAAAUCCAGA&UUUGGGUUUUUGAUUGAUUCA	2	0.999995259920263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2901_c0_g1_3971_TPlot.pdf
TRINITY_DN2901_c0_g1:4945	si_s494	TRINITY_DN2901_c0_g1	4933	4954	4945	-19.80	-13.00	0.656565656565657	8	4-14,4951-4941;15-20,4939-4934	1-3,4954-4952[UP5];x-x,4940-4940[BULt];21-21,4933-4933[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	UUUGUUUGUGUUUGUAUUUUUG&UUUAAAUAUAAACA-AAACAAU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN2901_c0_g1_4945_TPlot.pdf
TRINITY_DN2901_c0_g1:4946	si_s493	TRINITY_DN2901_c0_g1	4934	4955	4946	-19.80	-12.90	0.651515151515151	9	5-15,4951-4941;16-21,4939-4934	1-4,4955-4952[UP5];x-x,4940-4940[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	UUGUUUGUGUUUGUAUUUUUGU&AUUUAAAUAUAAACA-AAACAA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN2901_c0_g1_4946_TPlot.pdf
TRINITY_DN29026_c0_g1:2016	si_a70	TRINITY_DN29026_c0_g1	2006	2025	2016	-23.90	-16.10	0.673640167364017	6	1-14,2025-2012;17-18,2010-2009	15-16,2011-2011[AILq];19-21,2008-2006[UP3]	...((.-((((((((((((((&))))))))))))))..))...	ACAGAC-AACAAUUUGAGAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999995545908048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN29026_c0_g1_2016_TPlot.pdf
TRINITY_DN29026_c0_g1:501	si_a59	TRINITY_DN29026_c0_g1	490	518	501	-34.00	-22.10	0.65	21.5	1-8,518-511;9-17,502-494	x-x,510-503[BULt];18-21,493-490[UP3]	....(((((((((........((((((((&))))))))--------)))))))))....	UAAAGAAAGGAGCUCUUCCAUGAGUCGAU&GUCGACUC--------GCUUCUUUCAAAU	3	0.999991880123019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN29026_c0_g1_501_TPlot.pdf
TRINITY_DN29026_c0_g1:749	si_a68	TRINITY_DN29026_c0_g1	738	758	749	-25.40	-17.80	0.700787401574803	6	1-11,758-748;14-19,745-740	12-13,747-746[SIL];20-21,739-738[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	AAAAAAACUUUUUGAAAGAGG&CUUCUUUCAAAUUGUUUUUCA	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN29026_c0_g1_749_TPlot.pdf
TRINITY_DN29026_c0_g1:750	si_a67	TRINITY_DN29026_c0_g1	739	759	750	-27.20	-19.60	0.720588235294118	4.5	1-12,759-748;15-20,745-740	13-14,747-746[SIL];21-21,739-739[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	AAAAAACUUUUUGAAAGAGGU&GCUUCUUUCAAAUUGUUUUUC	2	0.984539391222183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN29026_c0_g1_750_TPlot.pdf
TRINITY_DN29026_c0_g1:752	si_a65	TRINITY_DN29026_c0_g1	741	761	752	-27.70	-21.70	0.783393501805054	4.5	1-14,761-748;17-21,745-741	15-16,747-746[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	AAAACUUUUUGAAAGAGGUGG&UCGCUUCUUUCAAAUUGUUUU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN29026_c0_g1_752_TPlot.pdf
TRINITY_DN2902_c0_g1:64	si_a704	TRINITY_DN2902_c0_g1	53	73	64	-29.30	-20.70	0.706484641638225	4	1-4,73-70;6-14,68-60;16-21,58-53	5-5,69-69[SIL];15-15,59-59[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	AUUAUUAUGGAAUGUAGUAGU&ACUGGUACAUUCCAAAAUAAU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN2902_c0_g1_64_TPlot.pdf
TRINITY_DN2904_c0_g1:239	si_a413	TRINITY_DN2904_c0_g1	228	248	239	-18.40	-13.40	0.728260869565218	6.5	1-7,248-242;9-19,240-230	8-8,241-241[SIL];20-21,229-228[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GAAUUUGUUUGAAAAUAAGCA&UGUUUAUAUUUAAAUAAAUAU	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN2904_c0_g1_239_TPlot.pdf
TRINITY_DN2904_c0_g1:242	si_a410	TRINITY_DN2904_c0_g1	231	251	242	-17.80	-12.00	0.674157303370786	9	4-10,248-242;12-21,240-231	1-3,251-249[UP5];11-11,241-241[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUUGUUUGAAAAUAAGCACAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999996786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2904_c0_g1_242_TPlot.pdf
TRINITY_DN2905_c0_g1:12684	si_s112	TRINITY_DN2905_c0_g1	12671	12693	12684	-24.80	-17.40	0.701612903225806	4	1-8,12693-12686;10-13,12684-12681;14-21,12678-12671	9-9,12685-12685[SIL];x-x,12680-12679[BULt]	((((((((..((((.((((((((&)))))))).))))--))))))))	UUCUAUUUUCUUCUUUUUUCCAA&UUGGAAAAUAGAA--AAAUAGAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s112_TRINITY_DN2905_c0_g1_12684_TPlot.pdf
TRINITY_DN2905_c0_g1:12685	si_s111	TRINITY_DN2905_c0_g1	12672	12694	12685	-24.80	-16.60	0.669354838709677	5	2-9,12693-12686;11-14,12684-12681;15-21,12678-12672	1-1,12694-12694[UP5];10-10,12685-12685[SIL];x-x,12680-12679[BULt]	(((((((..((((.((((((((.&.)))))))).))))--)))))))	UCUAUUUUCUUCUUUUUUCCAAA&AUUGGAAAAUAGAA--AAAUAGA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN2905_c0_g1_12685_TPlot.pdf
TRINITY_DN29064_c0_g1:163	si_a406	TRINITY_DN29064_c0_g1	152	172	163	-19.80	-13.00	0.656565656565657	11.5	2-14,171-159	1-1,172-172[UP5];15-21,158-152[UP3]	.......(((((((((((((.&.))))))))))))).......	GGUAUGGGUGAACGAAACGAG&AUUGUUUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN29064_c0_g1_163_TPlot.pdf
TRINITY_DN2906_c0_g1:1314	si_s8	TRINITY_DN2906_c0_g1	1303	1323	1314	-21.30	-14.10	0.661971830985915	9	3-8,1321-1316;10-18,1314-1306	1-2,1323-1322[UP5];9-9,1315-1315[SIL];19-21,1305-1303[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	CAGAUAGUAAUACUGAGUAUA&AUUACUUAUUAUUACUAUAUU	2	0.999906015518565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN2906_c0_g1_1314_TPlot.pdf
TRINITY_DN2907_c0_g2:1328	si_s73	TRINITY_DN2907_c0_g2	1314	1337	1328	-24.00	-16.10	0.670833333333333	7	1-3,1337-1335;5-15,1333-1323;16-21,1319-1314	4-4,1334-1334[SIL];x-x,1322-1320[BULt]	((((((...(((((((((((.(((&))).)))))))))))---))))))	AAAGGAUUCAAGAAAAAGAACGGA&UCUAUUUUUUUUCUU---UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2907_c0_g2_1328_TPlot.pdf
TRINITY_DN2907_c0_g2:1329	si_s72	TRINITY_DN2907_c0_g2	1315	1338	1329	-24.10	-16.20	0.672199170124481	7	1-4,1338-1335;6-16,1333-1323;17-21,1319-1315	5-5,1334-1334[SIL];x-x,1322-1320[BULt]	(((((...(((((((((((.((((&)))).)))))))))))---)))))	AAGGAUUCAAGAAAAAGAACGGAA&UUCUAUUUUUUUUCUU---UCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2907_c0_g2_1329_TPlot.pdf
TRINITY_DN2907_c0_g2:1351	si_s76	TRINITY_DN2907_c0_g2	1338	1360	1351	-23.60	-16.50	0.699152542372881	4	2-14,1359-1347;15-16,1345-1344;17-21,1342-1338	1-1,1360-1360[UP5];x-x,1346-1346[BULt];x-x,1343-1343[BULt]	(((((.((.(((((((((((((.&.)))))))))))))-))-)))))	AAGAACAGCGAAAGAAAGAAAAA&AUUUUUUUUCUUUC-CU-UUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2907_c0_g2_1351_TPlot.pdf
TRINITY_DN2907_c0_g2:1404	si_s80	TRINITY_DN2907_c0_g2	1391	1413	1404	-28.20	-21.18	0.751063829787234	7.5	2-12,1412-1402;15-21,1397-1391	1-1,1413-1413[UP5];13-14,1401-1398[AILt]	(((((((....(((((((((((.&.)))))))))))--..)))))))	GAGGAAGCUUUAGGAAAGAAAAU&UUUUUCUUUCCU--UUCUUCUUC	4	0.999999998721042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN2907_c0_g2_1404_TPlot.pdf
TRINITY_DN2907_c0_g2:1408	si_s76	TRINITY_DN2907_c0_g2	1392	1417	1408	-23.60	-15.40	0.652542372881356	10.5	1-3,1417-1415;6-16,1412-1402;17-21,1396-1392	4-5,1414-1413[SIL];x-x,1401-1397[BULt]	(((((.....(((((((((((..(((&)))..)))))))))))-----)))))	AGGAAGCUUUAGGAAAGAAAAUUAGU&AUUUUUUUUCUUUCCU-----UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN2907_c0_g2_1408_TPlot.pdf
TRINITY_DN2907_c0_g2:1409	si_s75	TRINITY_DN2907_c0_g2	1393	1418	1409	-24.00	-15.90	0.6625	10.5	1-4,1418-1415;7-17,1412-1402;18-21,1396-1393	5-6,1414-1413[SIL];x-x,1401-1397[BULt]	((((.....(((((((((((..((((&))))..)))))))))))-----))))	GGAAGCUUUAGGAAAGAAAAUUAGUA&UAUUUUUUUUCUUUCCU-----UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2907_c0_g2_1409_TPlot.pdf
TRINITY_DN2907_c0_g2:1412	si_s72	TRINITY_DN2907_c0_g2	1401	1421	1412	-24.10	-15.70	0.651452282157676	11	4-7,1418-1415;10-20,1412-1402	1-3,1421-1419[UP5];8-9,1414-1413[SIL];21-21,1401-1401[UP3]	.(((((((((((..((((...&...))))..))))))))))).	UAGGAAAGAAAAUUAGUAACU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN2907_c0_g2_1412_TPlot.pdf
TRINITY_DN2907_c0_g2:2053	si_a411	TRINITY_DN2907_c0_g2	2042	2063	2053	-17.90	-11.70	0.653631284916201	7.5	1-6,2063-2058;7-17,2056-2046	x-x,2057-2057[BULt];18-21,2045-2042[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	CUAAAUUUGAAUGUAUAACAAA&UUUGUU-UAUAUUUAAAUAAAU	3	0.999999999999743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2907_c0_g2_2053_TPlot.pdf
TRINITY_DN2907_c0_g2:2054	si_a410	TRINITY_DN2907_c0_g2	2043	2064	2054	-17.80	-11.90	0.668539325842697	7.5	2-7,2063-2058;8-18,2056-2046	1-1,2064-2064[UP5];x-x,2057-2057[BULt];19-21,2045-2043[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	UAAAUUUGAAUGUAUAACAAAG&UUUUGUU-UAUAUUUAAAUAAA	2	0.999999991802517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2907_c0_g2_2054_TPlot.pdf
TRINITY_DN2907_c0_g2:2303	si_a374	TRINITY_DN2907_c0_g2	2292	2312	2303	-25.60	-17.00	0.6640625	4	2-13,2311-2300;15-21,2298-2292	1-1,2312-2312[UP5];14-14,2299-2299[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AGUUUGAUAUUAUUUUUGAUG&GAUCAAAAAUGAUUUCGAAUU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN2907_c0_g2_2303_TPlot.pdf
TRINITY_DN2907_c0_g2:827	si_s81	TRINITY_DN2907_c0_g2	817	840	827	-28.90	-19.30	0.667820069204152	10.5	1-5,840-836;6-12,831-825;14-21,824-817	x-x,835-832[BULt];13-13,x-x[BULq]	((((((((-(((((((....(((((&)))))----))))))).))))))))	GGAAGAAG-AAGGAGAUGCUGAAAA&UUUUC----UUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2907_c0_g2_827_TPlot.pdf
TRINITY_DN2909_c0_g1:893	si_a317	TRINITY_DN2909_c0_g1	882	903	893	-24.30	-16.30	0.670781893004115	7.5	1-5,903-899;7-15,896-888;17-20,886-883	6-6,898-897[AILt];16-16,887-887[SIL];21-21,882-882[UP3]	.((((.(((((((((..(((((&)))))-.))))))))).)))).	CAAAGCAAUCAUGGAGCAGAUC&GAUUU-AUCCAUGAUUUUUUUA	4	0.999999985083225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN2909_c0_g1_893_TPlot.pdf
TRINITY_DN290_c0_g1:1113	si_s584	TRINITY_DN290_c0_g1	1102	1122	1113	-26.30	-17.40	0.661596958174905	4	1-12,1122-1111;15-21,1108-1102	13-14,1110-1109[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GGAUUUAAGUGUGAUUUUUUU&AAAAAAAUCAUGGAUAAAUCC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s584_TRINITY_DN290_c0_g1_1113_TPlot.pdf
TRINITY_DN2910_c0_g1:1271	si_s278	TRINITY_DN2910_c0_g1	1260	1281	1271	-35.10	-23.20	0.660968660968661	10.5	2-6,1280-1276;9-11,1272-1270;13-21,1268-1260	1-1,1281-1281[UP5];7-8,1275-1273[AILt];12-12,1269-1269[SIL]	(((((((((.(((...(((((.&.)))))-..))).)))))))))	GGCUAGGCGAGUUUGGGUCGAC&AUCGAC-AUAAUACGCCUAGUC	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s278_TRINITY_DN2910_c0_g1_1271_TPlot.pdf
TRINITY_DN2910_c0_g1:1450	si_s71	TRINITY_DN2910_c0_g1	1439	1460	1450	-25.70	-18.30	0.712062256809339	9	1-5,1460-1456;6-16,1454-1444;18-20,1442-1440	x-x,1455-1455[BULt];17-17,1443-1443[SIL];21-21,1439-1439[UP3]	.(((.(((((((((((.(((((&)))))-))))))))))).))).	CGGAUGGGAGGAAAAUCGGAGG&CUUCU-AUUUUUUUUCUUUCCU	2	0.999999993528872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2910_c0_g1_1450_TPlot.pdf
TRINITY_DN2910_c0_g1:1451	si_s70	TRINITY_DN2910_c0_g1	1440	1461	1451	-25.80	-18.20	0.705426356589147	8.5	2-6,1460-1456;7-17,1454-1444;19-21,1442-1440	1-1,1461-1461[UP5];x-x,1455-1455[BULt];18-18,1443-1443[SIL]	(((.(((((((((((.(((((.&.)))))-))))))))))).)))	GGAUGGGAGGAAAAUCGGAGGG&ACUUCU-AUUUUUUUUCUUUCC	4	0.999999999969506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2910_c0_g1_1451_TPlot.pdf
TRINITY_DN2910_c0_g1:2041	si_a593	TRINITY_DN2910_c0_g1	2030	2051	2041	-32.90	-21.50	0.653495440729483	12	2-9,2050-2043;14-19,2037-2032	1-1,2051-2051[UP5];10-13,2042-2038[AILt];20-21,2031-2030[UP3]	..((((((.....((((((((.&.))))))))-....))))))..	GAGCGAAAUUGAGUGUCCUUCA&AGAAGGACA-GAAUUUUCGCAA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN2910_c0_g1_2041_TPlot.pdf
TRINITY_DN2910_c0_g1:3510	si_s796	TRINITY_DN2910_c0_g1	3499	3519	3510	-30.30	-22.60	0.745874587458746	8	3-8,3517-3512;10-21,3510-3499	1-2,3519-3518[UP5];9-9,3511-3511[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGCGGAGAUGGACUACGAGAG&AGCUCGUAUUUUAUCUUCGUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN2910_c0_g1_3510_TPlot.pdf
TRINITY_DN2910_c0_g1:5390	si_a309	TRINITY_DN2910_c0_g1	5378	5399	5390	-33.60	-22.30	0.663690476190476	7.5	1-7,5399-5393;9-15,5391-5385;16-20,5383-5379	8-8,5392-5392[SIL];x-x,5384-5384[BULt];21-21,5378-5378[UP3]	.(((((.(((((((.(((((((&))))))).)))))))-))))).	GCAUGGAAUAAAUUGAGGCGGG&UUCGCUUGGAUUUAU-CCAUGA	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN2910_c0_g1_5390_TPlot.pdf
TRINITY_DN29114_c0_g1:468	si_s352	TRINITY_DN29114_c0_g1	457	477	468	-27.20	-17.80	0.654411764705882	7	1-6,477-472;8-16,470-462	7-7,471-471[SIL];17-21,461-457[UP3]	.....(((((((((.((((((&)))))).))))))))).....	UUUUCUCUAUUUCUCUAUCUC&GAGAUAAAGAAAUAGAUUGAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN29114_c0_g1_468_TPlot.pdf
TRINITY_DN29114_c0_g1:471	si_s349	TRINITY_DN29114_c0_g1	460	480	471	-31.60	-22.50	0.712025316455696	5.5	1-9,480-472;11-19,470-462	10-10,471-471[SIL];20-21,461-460[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UCUCUAUUUCUCUAUCUCUCU&GGGGAGAUAAAGAAAUAGAUU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s349_TRINITY_DN29114_c0_g1_471_TPlot.pdf
TRINITY_DN2911_c0_g1:1109	si_a545	TRINITY_DN2911_c0_g1	1098	1119	1109	-28.10	-21.20	0.754448398576512	8	2-8,1118-1112;9-19,1110-1100	1-1,1119-1119[UP5];x-x,1111-1111[BULt];20-21,1099-1098[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	ACGAAGAAGUAGAUUUGGGCCA&CGGUUCAA-UCUAUUUCUUUAU	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN2911_c0_g1_1109_TPlot.pdf
TRINITY_DN2911_c0_g1:2224	si_s125	TRINITY_DN2911_c0_g1	2213	2233	2224	-27.20	-18.40	0.676470588235294	9	4-15,2230-2219;18-20,2216-2214	1-3,2233-2231[UP5];16-17,2218-2217[SIL];21-21,2213-2213[UP3]	.(((..((((((((((((...&...))))))))))))..))).	CUUGCCUCAGCUCUUCUACUU&AAAUAGAAGAGUUGAAUCAAU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN2911_c0_g1_2224_TPlot.pdf
TRINITY_DN2911_c0_g1:2225	si_s124	TRINITY_DN2911_c0_g1	2214	2234	2225	-27.10	-18.30	0.675276752767528	9.5	5-16,2230-2219;19-21,2216-2214	1-4,2234-2231[UP5];17-18,2218-2217[SIL]	(((..((((((((((((....&....))))))))))))..)))	UUGCCUCAGCUCUUCUACUUC&AAAAUAGAAGAGUUGAAUCAA	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN2911_c0_g1_2225_TPlot.pdf
TRINITY_DN2911_c0_g1:5018	si_a630	TRINITY_DN2911_c0_g1	5007	5027	5018	-25.80	-17.80	0.689922480620155	7	1-8,5027-5020;10-20,5018-5008	9-9,5019-5019[SIL];21-21,5007-5007[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	GCGGAAGAAUUGUCAUGAUAU&GUAUUAUGUCGAUUUUUUUGA	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN2911_c0_g1_5018_TPlot.pdf
TRINITY_DN2911_c0_g1:5048	si_a785	TRINITY_DN2911_c0_g1	5036	5057	5048	-25.90	-17.10	0.66023166023166	6.5	1-10,5057-5048;12-14,5046-5044;15-18,5042-5039;20-21,5037-5036	11-11,5047-5047[SIL];x-x,5043-5043[BULt];19-19,5038-5038[SIL]	((.((((.(((.((((((((((&)))))))))).)))-)))).))	GAUGAUAUGAACAAUGGGAGAG&CUCUUCUAUUUUUC-UAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN2911_c0_g1_5048_TPlot.pdf
TRINITY_DN2911_c0_g1:5103	si_a770	TRINITY_DN2911_c0_g1	5092	5116	5103	-28.70	-20.66	0.7198606271777	13	1-8,5116-5109;11-21,5102-5092	9-10,5108-5103[AILt]	(((((((((((......((((((((&))))))))----..)))))))))))	GAAGAGUUGAAGAUGAAAGUCAAAA&UUUUGAUU----GAUUCAACUCUUC	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN2911_c0_g1_5103_TPlot.pdf
TRINITY_DN2911_c0_g1:677	si_s601	TRINITY_DN2911_c0_g1	666	687	677	-28.30	-18.90	0.667844522968198	11	2-5,686-683;6-9,681-678;12-19,675-668	1-1,687-687[UP5];x-x,682-682[BULt];10-11,677-676[SIL];20-21,667-666[UP3]	..((((((((..((((.((((.&.))))-))))..))))))))..	AGGAGAGGGAGGCGCUGUGGAG&AUCCA-AGCGAAUCUUUUUUAA	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN2911_c0_g1_677_TPlot.pdf
TRINITY_DN29121_c1_g1:357	si_a876	TRINITY_DN29121_c1_g1	347	366	357	-27.30	-18.80	0.688644688644689	7	1-13,366-354;15-16,353-352	14-14,x-x[BULq];17-21,351-347[UP3]	.....((-(((((((((((((&))))))))))))).)).....	UUUAGGA-UGCAACUAAGUCU&AGAUUUAGUUGCAAUCAAUAU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN29121_c1_g1_357_TPlot.pdf
TRINITY_DN29121_c1_g1:358	si_a875	TRINITY_DN29121_c1_g1	348	367	358	-27.10	-19.10	0.70479704797048	7	2-14,366-354;16-17,353-352	1-1,367-367[UP5];15-15,x-x[BULq];18-21,351-348[UP3]	....((-(((((((((((((.&.))))))))))))).))....	UUAGGA-UGCAACUAAGUCUG&AAGAUUUAGUUGCAAUCAAUA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN29121_c1_g1_358_TPlot.pdf
TRINITY_DN29121_c1_g1:359	si_a874	TRINITY_DN29121_c1_g1	349	368	359	-26.70	-19.10	0.715355805243446	8	3-15,366-354;17-18,353-352	1-2,368-367[UP5];16-16,x-x[BULq];19-21,351-349[UP3]	...((-(((((((((((((..&..))))))))))))).))...	UAGGA-UGCAACUAAGUCUGA&AAAGAUUUAGUUGCAAUCAAU	0	0.0387526024165747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN29121_c1_g1_359_TPlot.pdf
TRINITY_DN29121_c1_g1:360	si_a873	TRINITY_DN29121_c1_g1	350	369	360	-27.00	-19.10	0.707407407407407	9	4-16,366-354;18-19,353-352	1-3,369-367[UP5];17-17,x-x[BULq];20-21,351-350[UP3]	..((-(((((((((((((...&...))))))))))))).))..	AGGA-UGCAACUAAGUCUGAU&UAAAGAUUUAGUUGCAAUCAA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN29121_c1_g1_360_TPlot.pdf
TRINITY_DN29121_c1_g1:361	si_a872	TRINITY_DN29121_c1_g1	351	370	361	-27.00	-19.10	0.707407407407407	10	5-17,366-354;19-20,353-352	1-4,370-367[UP5];18-18,x-x[BULq];21-21,351-351[UP3]	.((-(((((((((((((....&....))))))))))))).)).	GGA-UGCAACUAAGUCUGAUG&UUAAAGAUUUAGUUGCAAUCA	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN29121_c1_g1_361_TPlot.pdf
TRINITY_DN29121_c1_g1:362	si_a871	TRINITY_DN29121_c1_g1	352	372	362	-26.40	-19.20	0.727272727272727	7	1-4,372-369;6-18,366-354;20-21,353-352	5-5,368-367[AILt];19-19,x-x[BULq]	((-(((((((((((((..((((&))))-.))))))))))))).))	GA-UGCAACUAAGUCUGAUGAU&AUUA-AAGAUUUAGUUGCAAUC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN29121_c1_g1_362_TPlot.pdf
TRINITY_DN29121_c1_g1:363	si_a870	TRINITY_DN29121_c1_g1	352	373	363	-24.80	-19.60	0.790322580645161	8.5	1-5,373-369;7-19,366-354	6-6,368-367[AILt];20-21,353-352[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	GAUGCAACUAAGUCUGAUGAUG&UAUUA-AAGAUUUAGUUGCAAU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN29121_c1_g1_363_TPlot.pdf
TRINITY_DN29121_c1_g1:364	si_a869	TRINITY_DN29121_c1_g1	353	374	364	-24.80	-20.00	0.806451612903226	9	2-6,373-369;8-20,366-354	1-1,374-374[UP5];7-7,368-367[AILt];21-21,353-353[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	AUGCAACUAAGUCUGAUGAUGG&UUAUUA-AAGAUUUAGUUGCAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN29121_c1_g1_364_TPlot.pdf
TRINITY_DN29121_c1_g1:365	si_a868	TRINITY_DN29121_c1_g1	354	375	365	-24.80	-19.80	0.798387096774194	10	3-7,373-369;9-21,366-354	1-2,375-374[UP5];8-8,368-367[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	UGCAACUAAGUCUGAUGAUGGA&AUUAUUA-AAGAUUUAGUUGCA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN29121_c1_g1_365_TPlot.pdf
TRINITY_DN29121_c1_g1:366	si_a867	TRINITY_DN29121_c1_g1	355	373	366	-24.10	-18.70	0.775933609958506	7.5	2-7,372-367;10-21,366-355	1-1,373-373[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GCAACUAAGUCU--GAUGAUG&AAUUAUUAAAGAUUUAGUUGC	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN29121_c1_g1_366_TPlot.pdf
TRINITY_DN29121_c1_g1:369	si_a865	TRINITY_DN29121_c1_g1	357	378	369	-24.00	-16.80	0.7	9.5	1-3,378-376;5-10,374-369;12-21,366-357	4-4,375-375[SIL];11-11,368-367[AILt]	((((((((((..((((((.(((&))).))))))-.))))))))))	AACUAAGUCUGAUGAUGGAUGG&CCAAUUAUUA-AAGAUUUAGUU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN29121_c1_g1_369_TPlot.pdf
TRINITY_DN29121_c1_g1:370	si_a864	TRINITY_DN29121_c1_g1	358	379	370	-25.00	-17.60	0.704	9.5	1-4,379-376;6-11,374-369;13-21,366-358	5-5,375-375[SIL];12-12,368-367[AILt]	(((((((((..((((((.((((&)))).))))))-.)))))))))	ACUAAGUCUGAUGAUGGAUGGA&UCCAAUUAUUA-AAGAUUUAGU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a864_TRINITY_DN29121_c1_g1_370_TPlot.pdf
TRINITY_DN29121_c1_g1:371	si_a863	TRINITY_DN29121_c1_g1	359	380	371	-24.40	-16.30	0.668032786885246	9.5	2-5,379-376;7-12,374-369;14-21,366-359	1-1,380-380[UP5];6-6,375-375[SIL];13-13,368-367[AILt]	((((((((..((((((.((((.&.)))).))))))-.))))))))	CUAAGUCUGAUGAUGGAUGGAA&AUCCAAUUAUUA-AAGAUUUAG	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN29121_c1_g1_371_TPlot.pdf
TRINITY_DN29123_c0_g2:1219	si_s311	TRINITY_DN29123_c0_g2	1208	1228	1219	-30.60	-20.30	0.663398692810457	9	4-16,1225-1213;18-21,1211-1208	1-3,1228-1226[UP5];17-17,1212-1212[SIL]	((((.(((((((((((((...&...))))))))))))).))))	AGCAUGAGGGAUGGAAUUAUA&GAAAAUUCUGUCCUUCUUGUU	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN29123_c0_g2_1219_TPlot.pdf
TRINITY_DN29123_c0_g2:94	si_s768	TRINITY_DN29123_c0_g2	82	103	94	-26.80	-18.30	0.682835820895522	9	4-16,100-88;18-21,85-82	1-3,103-101[UP5];17-17,87-86[AILt]	((((..(((((((((((((...&...)))))))))))))-.))))	UAGCUUAUAGUAAUUGGUCUUU&AACGAUUAAUUACUAU-UGCUA	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN29123_c0_g2_94_TPlot.pdf
TRINITY_DN29161_c0_g1:45	si_a369	TRINITY_DN29161_c0_g1	34	54	45	-30.00	-19.78	0.659333333333333	8.5	2-9,53-46;13-21,42-34	1-1,54-54[UP5];10-12,45-43[SIL]	(((((((((...((((((((.&.))))))))...)))))))))	GAGAUCAUUCUGGAUUCGAUG&GAUCGGAUCAAAAAUGAUUUC	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN29161_c0_g1_45_TPlot.pdf
TRINITY_DN29170_c0_g2:310	si_a669	TRINITY_DN29170_c0_g2	299	321	310	-32.20	-21.00	0.652173913043478	11	3-9,319-313;10-21,310-299	1-2,321-320[UP5];x-x,312-311[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	UGUGGAUAAGGAUCGUCAGUGUU&CCUAUUGAU--UCCUUAUUCACG	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a669_TRINITY_DN29170_c0_g2_310_TPlot.pdf
TRINITY_DN2917_c0_g1:938	si_a356	TRINITY_DN2917_c0_g1	927	947	938	-26.90	-17.80	0.661710037174721	8	2-14,946-934;16-20,932-928	1-1,947-947[UP5];15-15,933-933[SIL];21-21,927-927[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UUCUGGCCAAGGUGGAAUUGG&UUAAUUCUAUUUUGAUCGGAU	2	0.993029117054739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN2917_c0_g1_938_TPlot.pdf
TRINITY_DN29180_c0_g1:40	si_a784	TRINITY_DN29180_c0_g1	29	49	40	-24.70	-16.10	0.651821862348178	9.5	2-8,48-42;10-18,40-32	1-1,49-49[UP5];9-9,41-41[SIL];19-21,31-29[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GACAUGGAAGAAGAGGAGGGA&ACUCUUCUAUUUUUCUAUUUU	0	0.760654919307052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN29180_c0_g1_40_TPlot.pdf
TRINITY_DN2918_c2_g2:25	si_s316	TRINITY_DN2918_c2_g2	14	34	25	-31.50	-20.80	0.66031746031746	7.5	1-13,34-22;15-18,20-17	14-14,21-21[SIL];19-21,16-14[UP3]	...((((.(((((((((((((&))))))))))))).))))...	GGCGUAAGGAGAAGGGUAGGA&UUCUGUCCUUCUUGUUACAAA	4	0.999998929956348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN2918_c2_g2_25_TPlot.pdf
TRINITY_DN2918_c2_g2:26	si_s315	TRINITY_DN2918_c2_g2	15	35	26	-31.60	-20.80	0.658227848101266	7.5	2-14,34-22;16-19,20-17	1-1,35-35[UP5];15-15,21-21[SIL];20-21,16-15[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	GCGUAAGGAGAAGGGUAGGAC&AUUCUGUCCUUCUUGUUACAA	4	0.999999198518655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN2918_c2_g2_26_TPlot.pdf
TRINITY_DN2918_c2_g2:28	si_s313	TRINITY_DN2918_c2_g2	17	37	28	-30.80	-20.40	0.662337662337662	9.5	4-16,34-22;18-21,20-17	1-3,37-35[UP5];17-17,21-21[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GUAAGGAGAAGGGUAGGACCC&AAAUUCUGUCCUUCUUGUUAC	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN2918_c2_g2_28_TPlot.pdf
TRINITY_DN29195_c0_g1:1182	si_a468	TRINITY_DN29195_c0_g1	1171	1190	1182	-21.30	-14.90	0.699530516431925	6.5	3-7,1188-1184;9-21,1183-1171	1-2,1190-1189[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	UGACAAUGGUUAC-UAUUACC&UAUAAUAUGUAAUUAUUGUUA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN29195_c0_g1_1182_TPlot.pdf
TRINITY_DN2919_c0_g1:1360	si_a667	TRINITY_DN2919_c0_g1	1347	1369	1360	-32.10	-21.50	0.669781931464174	8.5	2-10,1368-1360;12-15,1358-1355;16-20,1352-1348	1-1,1369-1369[UP5];11-11,1359-1359[SIL];x-x,1354-1353[BULt];21-21,1347-1347[UP3]	.(((((..((((.(((((((((.&.))))))))).))))--))))).	AGAAUGCAAGGGCUCGAUAGGCU&UGCCUAUUGAUUCCU--UAUUCA	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN2919_c0_g1_1360_TPlot.pdf
TRINITY_DN2919_c0_g1:1361	si_a666	TRINITY_DN2919_c0_g1	1348	1370	1361	-31.60	-21.00	0.664556962025316	9	3-11,1368-1360;13-16,1358-1355;17-21,1352-1348	1-2,1370-1369[UP5];12-12,1359-1359[SIL];x-x,1354-1353[BULt]	(((((..((((.(((((((((..&..))))))))).))))--)))))	GAAUGCAAGGGCUCGAUAGGCUU&AUGCCUAUUGAUUCCU--UAUUC	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN2919_c0_g1_1361_TPlot.pdf
TRINITY_DN2919_c0_g1:1363	si_a664	TRINITY_DN2919_c0_g1	1352	1372	1363	-29.60	-19.60	0.662162162162162	11.5	5-13,1368-1360;15-19,1358-1354	1-4,1372-1369[UP5];14-14,1359-1359[SIL];20-21,1353-1352[UP3]	..(((((.(((((((((....&....))))))))).)))))..	GCAAGGGCUCGAUAGGCUUAC&AAAUGCCUAUUGAUUCCUUAU	2	0.997083128970816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN2919_c0_g1_1363_TPlot.pdf
TRINITY_DN2919_c0_g1:1460	si_a766	TRINITY_DN2919_c0_g1	1447	1469	1460	-30.50	-20.40	0.668852459016393	11	1-11,1469-1459;12-18,1455-1449;20-21,1448-1447	x-x,1458-1456[BULt];19-19,x-x[BULq]	((-(((((((...(((((((((((&)))))))))))---))))))).))	GG-UGAAUUAUUGGUCAAAGGCCC&GGGUUUUUGAU---UGAUUCAACU	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN2919_c0_g1_1460_TPlot.pdf
TRINITY_DN2919_c0_g1:1461	si_a765	TRINITY_DN2919_c0_g1	1447	1470	1461	-30.50	-20.20	0.662295081967213	12.5	2-12,1469-1459;13-19,1455-1449	1-1,1470-1470[UP5];x-x,1458-1456[BULt];20-21,1448-1447[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	GGUGAAUUAUUGGUCAAAGGCCCG&UGGGUUUUUGAU---UGAUUCAAC	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN2919_c0_g1_1461_TPlot.pdf
TRINITY_DN2919_c0_g1:1462	si_a764	TRINITY_DN2919_c0_g1	1448	1471	1462	-28.90	-20.30	0.70242214532872	9	2-13,1470-1459;14-20,1455-1449	1-1,1471-1471[UP5];x-x,1458-1456[BULt];21-21,1448-1448[UP3]	.(((((((...((((((((((((.&.))))))))))))---))))))).	GUGAAUUAUUGGUCAAAGGCCCGC&UUGGGUUUUUGAU---UGAUUCAA	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2919_c0_g1_1462_TPlot.pdf
TRINITY_DN2919_c0_g1:1463	si_a763	TRINITY_DN2919_c0_g1	1449	1472	1463	-28.80	-20.10	0.697916666666667	10	3-14,1470-1459;15-21,1455-1449	1-2,1472-1471[UP5];x-x,1458-1456[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	UGAAUUAUUGGUCAAAGGCCCGCA&UUUGGGUUUUUGAU---UGAUUCA	2	0.994829164283728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2919_c0_g1_1463_TPlot.pdf
TRINITY_DN2919_c0_g1:1464	si_a762	TRINITY_DN2919_c0_g1	1450	1474	1464	-29.70	-19.70	0.663299663299663	9	1-3,1474-1472;4-15,1470-1459;16-21,1455-1450	x-x,1471-1471[BULt];x-x,1458-1456[BULt]	((((((...((((((((((((.(((&)))-))))))))))))---))))))	GAAUUAUUGGUCAAAGGCCCGCAAG&CUU-UGGGUUUUUGAU---UGAUUC	2	0.999978361284052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN2919_c0_g1_1464_TPlot.pdf
TRINITY_DN2919_c0_g1:326	si_a787	TRINITY_DN2919_c0_g1	313	335	326	-26.30	-17.20	0.653992395437262	10	1-15,335-321;16-19,318-315	x-x,320-319[BULt];20-21,314-313[UP3]	..((((..(((((((((((((((&)))))))))))))))--))))..	UCGAAAAUGUGGGGAAGUGGGAG&CUUCUAUUUUUCUAU--UUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN2919_c0_g1_326_TPlot.pdf
TRINITY_DN2919_c0_g1:329	si_a784	TRINITY_DN2919_c0_g1	318	338	329	-24.70	-17.50	0.708502024291498	11	3-18,336-321	1-2,338-337[UP5];19-21,320-318[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAUGUGGGGAAGUGGGAGAAA&ACUCUUCUAUUUUUCUAUUUU	3	0.999999936974234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2919_c0_g1_329_TPlot.pdf
TRINITY_DN2919_c0_g1:335	si_a598	TRINITY_DN2919_c0_g1	324	344	335	-32.30	-22.20	0.687306501547988	6	1-6,344-339;8-12,337-333;14-15,331-330;17-20,328-325	7-7,338-338[SIL];13-13,332-332[SIL];16-16,329-329[SIL];21-21,324-324[UP3]	.((((.((.(((((.((((((&)))))).))))).)).)))).	GGGAAGUGGGAGAAAUCUGUC&GACAGAAUUUUCGCAAUUCCA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN2919_c0_g1_335_TPlot.pdf
TRINITY_DN2919_c0_g1:456	si_a627	TRINITY_DN2919_c0_g1	445	464	456	-29.50	-19.90	0.674576271186441	6	1-3,464-462;5-14,461-452;16-21,450-445	4-4,x-x[BULq];15-15,451-451[SIL]	((((((.((((((((((-(((&))).)))))))))).))))))	AAAAAAACGACGUAGUG-GCC&GGCGUAUUAUGUCGAUUUUUU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN2919_c0_g1_456_TPlot.pdf
TRINITY_DN2919_c0_g1:617	si_s205	TRINITY_DN2919_c0_g1	607	626	617	-34.90	-24.00	0.687679083094556	4.5	1-4,626-623;6-15,621-612;17-21,611-607	5-5,622-622[SIL];16-16,x-x[BULq]	(((((-((((((((((.((((&)))).)))))))))).)))))	UCGAG-ACAAUUGGUAGAUUC&GAAUGUACCAGUUGUGUUCGA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN2919_c0_g1_617_TPlot.pdf
TRINITY_DN2919_c0_g1:916	si_a763	TRINITY_DN2919_c0_g1	905	926	916	-28.80	-18.80	0.652777777777778	10	1-7,926-920;8-16,918-910;19-20,907-906	x-x,919-919[BULt];17-18,909-908[SIL];21-21,905-905[UP3]	.((..(((((((((.(((((((&)))))))-)))))))))..)).	CGAUGCAAUUAGAGCACCCGGA&UUUGGGU-UUUUGAUUGAUUCA	3	0.999999999997467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2919_c0_g1_916_TPlot.pdf
TRINITY_DN291_c0_g1:1049	si_s72	TRINITY_DN291_c0_g1	1038	1058	1049	-24.10	-19.40	0.804979253112033	7	1-18,1058-1041	19-21,1040-1038[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACAGAAAGAAGAAAGGUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN291_c0_g1_1049_TPlot.pdf
TRINITY_DN291_c0_g1:1050	si_s71	TRINITY_DN291_c0_g1	1039	1059	1050	-25.70	-19.60	0.762645914396887	7	2-19,1058-1041	1-1,1059-1059[UP5];20-21,1040-1039[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAGAAAGAAGAAAGGUGGAAA&CUUCUAUUUUUUUUCUUUCCU	3	0.999949787575333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN291_c0_g1_1050_TPlot.pdf
TRINITY_DN291_c0_g1:1051	si_s70	TRINITY_DN291_c0_g1	1040	1060	1051	-25.80	-19.60	0.75968992248062	7.5	3-20,1058-1041	1-2,1060-1059[UP5];21-21,1040-1040[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGAAAGAAGAAAGGUGGAAAA&ACUUCUAUUUUUUUUCUUUCC	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN291_c0_g1_1051_TPlot.pdf
TRINITY_DN291_c0_g1:1053	si_s68	TRINITY_DN291_c0_g1	1042	1062	1053	-23.10	-16.40	0.70995670995671	10.5	5-21,1058-1042	1-4,1062-1059[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAAGAAAGGUGGAAAAGA&CAACUUCUAUUUUUUUUCUUU	3	0.999999998626374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN291_c0_g1_1053_TPlot.pdf
TRINITY_DN291_c0_g1:1054	si_s79	TRINITY_DN291_c0_g1	1043	1062	1054	-26.20	-21.10	0.805343511450382	6	1-8,1062-1055;11-21,1053-1043	9-10,1054-1054[AILq]	(((((((((((.-((((((((&))))))))..)))))))))))	AAGAAGAAAGGU-GGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN291_c0_g1_1054_TPlot.pdf
TRINITY_DN291_c0_g1:1060	si_a785	TRINITY_DN291_c0_g1	1049	1069	1060	-25.90	-16.90	0.652509652509653	8.5	1-6,1069-1064;9-20,1061-1050	7-8,1063-1062[SIL];21-21,1049-1049[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	AAAGGUGGAAAAGAUGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN291_c0_g1_1060_TPlot.pdf
TRINITY_DN291_c0_g1:1061	si_a784	TRINITY_DN291_c0_g1	1050	1070	1061	-24.70	-17.10	0.692307692307692	8.5	2-7,1069-1064;10-21,1061-1050	1-1,1070-1070[UP5];8-9,1063-1062[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	AAGGUGGAAAAGAUGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999970062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN291_c0_g1_1061_TPlot.pdf
TRINITY_DN291_c0_g1:1062	si_a783	TRINITY_DN291_c0_g1	1051	1071	1062	-24.70	-16.20	0.65587044534413	10.5	3-8,1069-1064;11-21,1061-1051	1-2,1071-1070[UP5];9-10,1063-1062[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	AGGUGGAAAAGAUGAGGAGGA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN291_c0_g1_1062_TPlot.pdf
TRINITY_DN291_c0_g1:1065	si_s806	TRINITY_DN291_c0_g1	1054	1074	1065	-28.60	-18.80	0.657342657342657	6.5	1-8,1074-1067;10-12,1065-1063;14-20,1061-1055	9-9,1066-1066[SIL];13-13,1062-1062[SIL];21-21,1054-1054[UP3]	.(((((((.(((.((((((((&)))))))).))).))))))).	UGGAAAAGAUGAGGAGGAUAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999999999854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN291_c0_g1_1065_TPlot.pdf
TRINITY_DN291_c0_g1:1066	si_s805	TRINITY_DN291_c0_g1	1055	1075	1066	-28.60	-19.70	0.688811188811189	5.5	1-9,1075-1067;11-13,1065-1063;15-21,1061-1055	10-10,1066-1066[SIL];14-14,1062-1062[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	GGAAAAGAUGAGGAGGAUAAA&UUUAUCUUCGUUACCUUUUCU	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN291_c0_g1_1066_TPlot.pdf
TRINITY_DN291_c0_g1:1160	si_a502	TRINITY_DN291_c0_g1	1149	1169	1160	-32.10	-24.90	0.775700934579439	6	1-16,1169-1154	17-21,1153-1149[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAUUAAAGGAAGACGAAGAAC&GUUUUUCGUCUUCCUUGGAAU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN291_c0_g1_1160_TPlot.pdf
TRINITY_DN291_c0_g1:1162	si_a500	TRINITY_DN291_c0_g1	1151	1171	1162	-34.40	-27.50	0.799418604651163	4.5	1-18,1171-1154	19-21,1153-1151[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUAAAGGAAGACGAAGAACGG&UCGUUUUUCGUCUUCCUUGGA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN291_c0_g1_1162_TPlot.pdf
TRINITY_DN291_c0_g1:1164	si_a498	TRINITY_DN291_c0_g1	1153	1173	1164	-33.50	-32.30	0.964179104477612	3	1-20,1173-1154	21-21,1153-1153[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AAAGGAAGACGAAGAACGGCA&UGUCGUUUUUCGUCUUCCUUG	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN291_c0_g1_1164_TPlot.pdf
TRINITY_DN291_c0_g1:1165	si_a497	TRINITY_DN291_c0_g1	1154	1174	1165	-32.00	-31.90	0.996875	3	2-21,1173-1154	1-1,1174-1174[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AAGGAAGACGAAGAACGGCAA&AUGUCGUUUUUCGUCUUCCUU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN291_c0_g1_1165_TPlot.pdf
TRINITY_DN291_c0_g1:1166	si_a496	TRINITY_DN291_c0_g1	1155	1175	1166	-32.40	-31.00	0.95679012345679	5	3-21,1173-1155	1-2,1175-1174[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGGAAGACGAAGAACGGCAAA&UAUGUCGUUUUUCGUCUUCCU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN291_c0_g1_1166_TPlot.pdf
TRINITY_DN291_c0_g1:1167	si_a495	TRINITY_DN291_c0_g1	1156	1176	1167	-31.90	-29.70	0.931034482758621	7	4-21,1173-1156	1-3,1176-1174[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGAAGACGAAGAACGGCAAAA&AUAUGUCGUUUUUCGUCUUCC	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN291_c0_g1_1167_TPlot.pdf
TRINITY_DN291_c0_g1:1168	si_a494	TRINITY_DN291_c0_g1	1157	1177	1168	-29.50	-26.40	0.894915254237288	9	5-21,1173-1157	1-4,1177-1174[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAGACGAAGAACGGCAAAAA&AAUAUGUCGUUUUUCGUCUUC	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN291_c0_g1_1168_TPlot.pdf
TRINITY_DN291_c0_g1:1169	si_a493	TRINITY_DN291_c0_g1	1158	1178	1169	-29.50	-23.20	0.786440677966102	10.5	6-21,1173-1158	1-5,1178-1174[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGACGAAGAACGGCAAAAAC&GAAUAUGUCGUUUUUCGUCUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN291_c0_g1_1169_TPlot.pdf
TRINITY_DN291_c0_g1:1171	si_a491	TRINITY_DN291_c0_g1	1160	1180	1171	-29.90	-21.00	0.702341137123746	14.5	8-21,1173-1160	1-7,1180-1174[UP5]	((((((((((((((.......&.......))))))))))))))	GACGAAGAACGGCAAAAACAA&UAGAAUAUGUCGUUUUUCGUC	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN291_c0_g1_1171_TPlot.pdf
TRINITY_DN291_c0_g1:1190	si_s82	TRINITY_DN291_c0_g1	1179	1197	1190	-28.90	-19.50	0.674740484429066	6.5	2-8,1196-1190;11-21,1189-1179	1-1,1197-1197[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	AAGAAGAGGAA--GAGAGAAU&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN291_c0_g1_1190_TPlot.pdf
TRINITY_DN291_c0_g1:1192	si_s83	TRINITY_DN291_c0_g1	1181	1205	1192	-30.90	-20.98	0.678964401294498	12.5	2-6,1204-1200;8-21,1194-1181	1-1,1205-1205[UP5];7-7,1199-1195[AILt]	((((((((((((((.....(((((.&.)))))----.))))))))))))))	GAAGAGGAAGAGAGAAUCAAAAGAG&UUCUUU----CCUUUCUUCUUCUUC	2	0.999999999999929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN291_c0_g1_1192_TPlot.pdf
TRINITY_DN291_c0_g1:1194	si_s81	TRINITY_DN291_c0_g1	1183	1207	1194	-28.90	-19.48	0.674048442906574	12.5	1-8,1207-1200;10-21,1194-1183	9-9,1199-1195[AILt]	((((((((((((.....((((((((&))))))))----.))))))))))))	AGAGGAAGAGAGAAUCAAAAGAGAA&UUUUCUUU----CCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN291_c0_g1_1194_TPlot.pdf
TRINITY_DN291_c0_g1:1195	si_s80	TRINITY_DN291_c0_g1	1184	1208	1195	-28.20	-18.38	0.65177304964539	13	2-9,1207-1200;11-21,1194-1184	1-1,1208-1208[UP5];10-10,1199-1195[AILt]	(((((((((((.....((((((((.&.))))))))----.)))))))))))	GAGGAAGAGAGAAUCAAAAGAGAAG&UUUUUCUUU----CCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN291_c0_g1_1195_TPlot.pdf
TRINITY_DN291_c0_g1:1254	si_s84	TRINITY_DN291_c0_g1	1241	1263	1254	-32.30	-21.10	0.653250773993808	5	1-13,1263-1251;15-18,1249-1246;19-20,1243-1242	14-14,1250-1250[SIL];x-x,1245-1244[BULt];21-21,1241-1241[UP3]	.((..((((.(((((((((((((&))))))))))))).))))--)).	AGAUUAGAACAAGAGAGGAAAGA&UCUUUCCUUUCUUCUUCU--UCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN291_c0_g1_1254_TPlot.pdf
TRINITY_DN291_c0_g1:1255	si_s83	TRINITY_DN291_c0_g1	1244	1264	1255	-30.90	-21.30	0.689320388349515	5	2-14,1263-1251;16-19,1249-1246	1-1,1264-1264[UP5];15-15,1250-1250[SIL];20-21,1245-1244[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UUAGAACAAGAGAGGAAAGAG&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN291_c0_g1_1255_TPlot.pdf
TRINITY_DN291_c0_g1:1259	si_s79	TRINITY_DN291_c0_g1	1248	1268	1259	-26.20	-22.40	0.854961832061069	5.5	1-18,1268-1251	19-21,1250-1248[UP3]	...((((((((((((((((((&))))))))))))))))))...	AACAAGAGAGGAAAGAGAGAA&UUUUUUCUUUCCUUUCUUCUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN291_c0_g1_1259_TPlot.pdf
TRINITY_DN291_c0_g1:1260	si_s78	TRINITY_DN291_c0_g1	1249	1269	1260	-26.20	-23.30	0.889312977099237	4.5	1-19,1269-1251	20-21,1250-1249[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACAAGAGAGGAAAGAGAGAAA&UUUUUUUCUUUCCUUUCUUCU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN291_c0_g1_1260_TPlot.pdf
TRINITY_DN291_c0_g1:1262	si_s76	TRINITY_DN291_c0_g1	1251	1271	1262	-23.60	-24.20	1	3.5	2-21,1270-1251	1-1,1271-1271[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AAGAGAGGAAAGAGAGAAAAA&AUUUUUUUUCUUUCCUUUCUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN291_c0_g1_1262_TPlot.pdf
TRINITY_DN291_c0_g1:1263	si_s75	TRINITY_DN291_c0_g1	1252	1272	1263	-24.00	-23.40	0.975	5.5	3-21,1270-1252	1-2,1272-1271[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAGAGGAAAGAGAGAAAAAA&UAUUUUUUUUCUUUCCUUUCU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN291_c0_g1_1263_TPlot.pdf
TRINITY_DN291_c0_g1:1264	si_s74	TRINITY_DN291_c0_g1	1253	1273	1264	-25.00	-22.10	0.884	7.5	4-21,1270-1253	1-3,1273-1271[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAGAGGAAAGAGAGAAAAAAA&CUAUUUUUUUUCUUUCCUUUC	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN291_c0_g1_1264_TPlot.pdf
TRINITY_DN291_c0_g1:1265	si_s73	TRINITY_DN291_c0_g1	1254	1274	1265	-24.00	-18.90	0.7875	9.5	5-21,1270-1254	1-4,1274-1271[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGAGGAAAGAGAGAAAAAAAC&UCUAUUUUUUUUCUUUCCUUU	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN291_c0_g1_1265_TPlot.pdf
TRINITY_DN291_c0_g1:1267	si_s71	TRINITY_DN291_c0_g1	1256	1279	1267	-25.70	-20.44	0.795330739299611	9.5	1-5,1279-1275;7-21,1270-1256	6-6,1274-1271[AILt]	(((((((((((((((....(((((&)))))---.)))))))))))))))	AGGAAAGAGAGAAAAAAACAGAAG&CUUCU---AUUUUUUUUCUUUCCU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN291_c0_g1_1267_TPlot.pdf
TRINITY_DN291_c0_g1:1268	si_s70	TRINITY_DN291_c0_g1	1257	1280	1268	-25.80	-19.34	0.749612403100775	10.5	2-6,1279-1275;8-21,1270-1257	1-1,1280-1280[UP5];7-7,1274-1271[AILt]	((((((((((((((....(((((.&.)))))---.))))))))))))))	GGAAAGAGAGAAAAAAACAGAAGG&ACUUCU---AUUUUUUUUCUUUCC	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN291_c0_g1_1268_TPlot.pdf
TRINITY_DN291_c0_g1:1273	si_s69	TRINITY_DN291_c0_g1	1262	1281	1273	-23.40	-16.50	0.705128205128205	7.5	3-7,1279-1275;10-21,1273-1262	1-2,1281-1280[UP5];8-9,1274-1274[AILq]	((((((((((((.-(((((..&..)))))..))))))))))))	GAGAGAAAAAAAC-AGAAGGA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN291_c0_g1_1273_TPlot.pdf
TRINITY_DN291_c0_g1:3467	si_s74	TRINITY_DN291_c0_g1	3455	3476	3467	-25.00	-16.60	0.664	6	1-13,3476-3464;16-16,3461-3461;17-21,3459-3455	14-15,3463-3462[SIL];x-x,3460-3460[BULt]	(((((.(..(((((((((((((&)))))))))))))..)-)))))	GAAAGUGCCAGAAAAGGAAUGG&CUAUUUUUUUUCUUUC-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN291_c0_g1_3467_TPlot.pdf
TRINITY_DN291_c0_g1:611	si_s79	TRINITY_DN291_c0_g1	599	620	611	-26.20	-17.40	0.66412213740458	6	1-11,620-610;13-21,607-599	12-12,609-608[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AAGGGGAAAAAGAAAGGAAAAA&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN291_c0_g1_611_TPlot.pdf
TRINITY_DN291_c0_g1:612	si_s78	TRINITY_DN291_c0_g1	600	621	612	-26.20	-17.40	0.66412213740458	5	1-12,621-610;14-21,607-600	13-13,609-608[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AGGGGAAAAAGAAAGGAAAAAA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN291_c0_g1_612_TPlot.pdf
TRINITY_DN291_c0_g1:847	si_s84	TRINITY_DN291_c0_g1	837	856	847	-32.30	-24.20	0.74922600619195	3.5	1-10,856-847;12-20,846-838	11-11,x-x[BULq];21-21,837-837[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	AGAAGGAGAA-AAAGGAAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN291_c0_g1_847_TPlot.pdf
TRINITY_DN291_c0_g1:848	si_s83	TRINITY_DN291_c0_g1	838	857	848	-30.90	-24.00	0.776699029126214	3.5	2-11,856-847;13-21,846-838	1-1,857-857[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	GAAGGAGAA-AAAGGAAAGAG&UUCUUUCCUUUCUUCUUCUUC	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN291_c0_g1_848_TPlot.pdf
TRINITY_DN291_c0_g1:849	si_s82	TRINITY_DN291_c0_g1	836	858	849	-28.90	-25.20	0.8719723183391	5.5	1-11,858-848;12-21,845-836	x-x,847-846[BULt]	((((((((((..(((((((((((&)))))))))))--))))))))))	AAGAAGGAGAAAAAGGAAAGAGA&UUUCUUUCCUU--UCUUCUUCUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN291_c0_g1_849_TPlot.pdf
TRINITY_DN291_c0_g1:850	si_s81	TRINITY_DN291_c0_g1	837	859	850	-28.90	-25.20	0.8719723183391	5.5	1-12,859-848;13-21,845-837	x-x,847-846[BULt]	(((((((((..((((((((((((&))))))))))))--)))))))))	AGAAGGAGAAAAAGGAAAGAGAA&UUUUCUUUCCUU--UCUUCUUCU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN291_c0_g1_850_TPlot.pdf
TRINITY_DN291_c0_g1:851	si_s80	TRINITY_DN291_c0_g1	838	860	851	-28.20	-24.80	0.879432624113475	3.5	1-13,860-848;14-21,845-838	x-x,847-846[BULt]	((((((((..(((((((((((((&)))))))))))))--))))))))	GAAGGAGAAAAAGGAAAGAGAAA&UUUUUCUUUCCUU--UCUUCUUC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN291_c0_g1_851_TPlot.pdf
TRINITY_DN291_c0_g1:853	si_s78	TRINITY_DN291_c0_g1	840	862	853	-26.20	-22.30	0.851145038167939	3.5	1-15,862-848;16-21,845-840	x-x,847-846[BULt]	((((((..(((((((((((((((&)))))))))))))))--))))))	AGGAGAAAAAGGAAAGAGAAAAA&UUUUUUUCUUUCCUU--UCUUCU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN291_c0_g1_853_TPlot.pdf
TRINITY_DN291_c0_g1:854	si_s77	TRINITY_DN291_c0_g1	841	863	854	-25.50	-21.10	0.827450980392157	4.5	2-16,862-848;17-21,845-841	1-1,863-863[UP5];x-x,847-846[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GGAGAAAAAGGAAAGAGAAAAAC&UUUUUUUUCUUUCCUU--UCUUC	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN291_c0_g1_854_TPlot.pdf
TRINITY_DN291_c0_g1:856	si_s75	TRINITY_DN291_c0_g1	845	865	856	-24.00	-17.70	0.7375	8	4-19,862-847	1-3,865-863[UP5];20-21,846-845[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAAAGGAAAGAGAAAAACAG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN291_c0_g1_856_TPlot.pdf
TRINITY_DN291_c0_g1:857	si_s74	TRINITY_DN291_c0_g1	846	866	857	-25.00	-17.70	0.708	9	5-20,862-847	1-4,866-863[UP5];21-21,846-846[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAAGGAAAGAGAAAAACAGA&CUAUUUUUUUUCUUUCCUUUC	4	0.999999999999904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN291_c0_g1_857_TPlot.pdf
TRINITY_DN291_c0_g1:858	si_s73	TRINITY_DN291_c0_g1	847	866	858	-24.00	-18.60	0.775	5	1-3,866-864;6-21,862-847	4-5,863-863[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	AAAGGAAAGAGAAAAAC-AGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999987774819383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN291_c0_g1_858_TPlot.pdf
TRINITY_DN291_c0_g1:859	si_s72	TRINITY_DN291_c0_g1	848	867	859	-24.10	-18.60	0.771784232365145	5	1-4,867-864;7-21,862-848	5-6,863-863[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	AAGGAAAGAGAAAAAC-AGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.99999750563007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN291_c0_g1_859_TPlot.pdf
TRINITY_DN291_c0_g1:861	si_s70	TRINITY_DN291_c0_g1	850	869	861	-25.80	-19.30	0.748062015503876	5.5	2-6,868-864;9-21,862-850	1-1,869-869[UP5];7-8,863-863[AILq]	(((((((((((((.-(((((.&.)))))..)))))))))))))	GGAAAGAGAAAAAC-AGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN291_c0_g1_861_TPlot.pdf
TRINITY_DN291_c0_g1:862	si_s69	TRINITY_DN291_c0_g1	851	870	862	-23.40	-16.00	0.683760683760684	7.5	3-7,868-864;10-21,862-851	1-2,870-869[UP5];8-9,863-863[AILq]	((((((((((((.-(((((..&..)))))..))))))))))))	GAAAGAGAAAAAC-AGAAGAA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN291_c0_g1_862_TPlot.pdf
TRINITY_DN291_c0_g1:969	si_a785	TRINITY_DN291_c0_g1	958	976	969	-25.90	-17.90	0.691119691119691	6	2-7,975-970;10-21,969-958	1-1,976-976[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GAAAAUAGAAAA--GGAAGAC&CUCUUCUAUUUUUCUAUUUUC	3	0.999999999993701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN291_c0_g1_969_TPlot.pdf
TRINITY_DN2920_c0_g1:2770	si_s835	TRINITY_DN2920_c0_g1	2758	2779	2770	-27.70	-18.90	0.682310469314079	8.5	5-15,2775-2765;16-21,2763-2758	1-4,2779-2776[UP5];x-x,2764-2764[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	UCGUUUACUUUCAAAUUGAAGU&AAAACAAUUUGAAAG-AAGCGA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s835_TRINITY_DN2920_c0_g1_2770_TPlot.pdf
TRINITY_DN29211_c0_g1:210	si_a66	TRINITY_DN29211_c0_g1	199	219	210	-26.70	-17.90	0.670411985018727	8	1-7,219-213;9-14,211-206;16-19,204-201	8-8,212-212[SIL];15-15,205-205[SIL];20-21,200-199[UP3]	..((((.((((((.(((((((&))))))).)))))).))))..	UCAGGCUAUUUGAUGGAGGCG&CGCUUCUUUCAAAUUGUUUUU	1	0.260539888654464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN29211_c0_g1_210_TPlot.pdf
TRINITY_DN2922_c0_g1:1097	si_s615	TRINITY_DN2922_c0_g1	1087	1106	1097	-28.30	-18.60	0.657243816254417	4.5	2-15,1105-1092;18-21,1090-1087	1-1,1106-1106[UP5];16-17,1091-1091[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	AAGAA-GUUUGGAUUUAGAAC&UUUUUAAAUCCAAGCGAUCUU	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s615_TRINITY_DN2922_c0_g1_1097_TPlot.pdf
TRINITY_DN2922_c0_g1:846	si_a453	TRINITY_DN2922_c0_g1	835	856	846	-21.10	-14.60	0.691943127962085	11	5-7,852-850;8-21,848-835	1-4,856-853[UP5];x-x,849-849[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	GUUAUAUGUAACAGUCAAAGAA&AUAAUUG-UUGUUAUAUAUAAU	2	0.995260596514365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN2922_c0_g1_846_TPlot.pdf
TRINITY_DN2923_c0_g1:1205	si_s426	TRINITY_DN2923_c0_g1	1193	1214	1205	-23.60	-15.60	0.661016949152542	6	1-10,1214-1205;12-17,1203-1198;19-21,1195-1193	11-11,1204-1204[SIL];18-18,1197-1196[AILt]	(((..((((((.((((((((((&)))))))))).))))))-.)))	GUGAGAAUUGUAGUUGUAUAGA&UCUAUAUAACAAUAAUU-ACAU	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN2923_c0_g1_1205_TPlot.pdf
TRINITY_DN2923_c0_g1:1207	si_s424	TRINITY_DN2923_c0_g1	1196	1216	1207	-22.90	-16.60	0.724890829694323	5.5	1-12,1216-1205;14-19,1203-1198	13-13,1204-1204[SIL];20-21,1197-1196[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AGAAUUGUAGUUGUAUAGAGU&AUUCUAUAUAACAAUAAUUAC	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN2923_c0_g1_1207_TPlot.pdf
TRINITY_DN2923_c0_g1:1208	si_s423	TRINITY_DN2923_c0_g1	1197	1217	1208	-21.50	-17.90	0.832558139534884	4.5	1-13,1217-1205;15-20,1203-1198	14-14,1204-1204[SIL];21-21,1197-1197[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	GAAUUGUAGUUGUAUAGAGUA&UAUUCUAUAUAACAAUAAUUA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN2923_c0_g1_1208_TPlot.pdf
TRINITY_DN2923_c0_g1:1241	si_s355	TRINITY_DN2923_c0_g1	1230	1250	1241	-28.10	-19.40	0.690391459074733	4	1-19,1250-1232	20-21,1231-1230[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UAGUUUAGUUUAUUUCUUUAU&AUAAAGAAAUAGAUUGAACCG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s355_TRINITY_DN2923_c0_g1_1241_TPlot.pdf
TRINITY_DN2923_c0_g1:1242	si_s354	TRINITY_DN2923_c0_g1	1231	1251	1242	-28.60	-19.70	0.688811188811189	3.5	2-20,1250-1232	1-1,1251-1251[UP5];21-21,1231-1231[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGUUUAGUUUAUUUCUUUAUA&GAUAAAGAAAUAGAUUGAACC	1	0.00442530497859384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s354_TRINITY_DN2923_c0_g1_1242_TPlot.pdf
TRINITY_DN2923_c0_g1:1243	si_s353	TRINITY_DN2923_c0_g1	1232	1252	1243	-26.90	-19.70	0.732342007434944	4.5	3-21,1250-1232	1-2,1252-1251[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GUUUAGUUUAUUUCUUUAUAU&AGAUAAAGAAAUAGAUUGAAC	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN2923_c0_g1_1243_TPlot.pdf
TRINITY_DN2923_c0_g1:902	si_a417	TRINITY_DN2923_c0_g1	891	911	902	-21.40	-14.20	0.663551401869159	11.5	4-8,908-904;11-21,901-891	1-3,911-909[UP5];9-10,903-902[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	UCCUGUAUUUAGAUGGAUUAU&UAUAUUUAAAUAAAUAUAGGA	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN2923_c0_g1_902_TPlot.pdf
TRINITY_DN2927_c0_g1:2216	si_s121	TRINITY_DN2927_c0_g1	2205	2227	2216	-27.00	-17.56	0.65037037037037	13	1-3,2227-2225;7-19,2219-2207	4-6,2224-2220[AILt];20-21,2206-2205[UP3]	..(((((((((((((.....(((&)))--...)))))))))))))..	ACUCAACUCUUUUAUGGUAGUCU&AGA--AAAAUAGAAGAGUUGAAU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN2927_c0_g1_2216_TPlot.pdf
TRINITY_DN2927_c0_g1:2217	si_s120	TRINITY_DN2927_c0_g1	2206	2228	2217	-27.30	-18.66	0.683516483516484	12	1-4,2228-2225;8-20,2219-2207	5-7,2224-2220[AILt];21-21,2206-2206[UP3]	.(((((((((((((.....((((&))))--...))))))))))))).	CUCAACUCUUUUAUGGUAGUCUA&UAGA--AAAAUAGAAGAGUUGAA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s120_TRINITY_DN2927_c0_g1_2217_TPlot.pdf
TRINITY_DN2927_c0_g1:2218	si_s119	TRINITY_DN2927_c0_g1	2207	2229	2218	-27.40	-19.66	0.717518248175183	11	1-5,2229-2225;9-21,2219-2207	6-8,2224-2220[AILt]	(((((((((((((.....(((((&)))))--...)))))))))))))	UCAACUCUUUUAUGGUAGUCUAU&AUAGA--AAAAUAGAAGAGUUGA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN2927_c0_g1_2218_TPlot.pdf
TRINITY_DN2927_c0_g1:2219	si_s118	TRINITY_DN2927_c0_g1	2208	2230	2219	-26.40	-17.86	0.676515151515152	11.5	2-6,2229-2225;10-21,2219-2208	1-1,2230-2230[UP5];7-9,2224-2220[AILt]	((((((((((((.....(((((.&.)))))--...))))))))))))	CAACUCUUUUAUGGUAGUCUAUG&AAUAGA--AAAAUAGAAGAGUUG	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN2927_c0_g1_2219_TPlot.pdf
TRINITY_DN2927_c0_g1:2508	si_s644	TRINITY_DN2927_c0_g1	2494	2516	2508	-37.20	-26.50	0.712365591397849	7.5	1-4,2516-2513;6-13,2512-2505;14-21,2501-2494	5-5,x-x[BULq];x-x,2504-2502[BULt]	((((((((...((((((((-((((&)))).))))))))---))))))))	UGGUUGUGGUUUCGAGGGC-GACG&CGUUUGCCCUCGA---UACAAUCG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s644_TRINITY_DN2927_c0_g1_2508_TPlot.pdf
TRINITY_DN2927_c0_g1:2509	si_s212	TRINITY_DN2927_c0_g1	2498	2517	2509	-38.70	-27.50	0.710594315245478	8	1-2,2517-2516;4-8,2515-2511;10-21,2509-2498	3-3,x-x[BULq];9-9,2510-2510[SIL]	((((((((((((.(((((-((&)).))))).))))))))))))	UGUGGUUUCGAGGGCGAC-GG&CCAGUUGUGUUCGAAACCGCG	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN2927_c0_g1_2509_TPlot.pdf
TRINITY_DN2927_c0_g1:4029	si_s90	TRINITY_DN2927_c0_g1	4010	4038	4029	-35.30	-23.10	0.654390934844193	18.5	1-12,4038-4027;13-17,4020-4016;18-21,4013-4010	x-x,4026-4021[BULt];x-x,4015-4014[BULt]	((((..(((((......((((((((((((&))))))))))))------)))))--))))	CUGAAUGGCGGCCUUCCGGAAGAGGAAGG&CUUUCUUCUUCU------UCGCU--UCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN2927_c0_g1_4029_TPlot.pdf
TRINITY_DN2927_c0_g1:4030	si_s89	TRINITY_DN2927_c0_g1	4011	4039	4030	-35.30	-23.10	0.654390934844193	12	1-13,4039-4027;14-18,4020-4016;19-21,4013-4011	x-x,4026-4021[BULt];x-x,4015-4014[BULt]	(((..(((((......(((((((((((((&)))))))))))))------)))))--)))	UGAAUGGCGGCCUUCCGGAAGAGGAAGGG&CCUUUCUUCUUCU------UCGCU--UCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN2927_c0_g1_4030_TPlot.pdf
TRINITY_DN2927_c0_g1:4031	si_s88	TRINITY_DN2927_c0_g1	4014	4040	4031	-34.80	-24.50	0.704022988505747	11.5	1-14,4040-4027;15-19,4020-4016	x-x,4026-4021[BULt];20-21,4015-4014[UP3]	..(((((......((((((((((((((&))))))))))))))------)))))..	AUGGCGGCCUUCCGGAAGAGGAAGGGA&UCCUUUCUUCUUCU------UCGCUUC	3	0.999999877072956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2927_c0_g1_4031_TPlot.pdf
TRINITY_DN2928_c0_g1:1179	si_a635	TRINITY_DN2928_c0_g1	1168	1191	1179	-26.10	-17.44	0.668199233716475	12.5	1-8,1191-1184;10-18,1179-1171	9-9,1183-1180[AILt];19-21,1170-1168[UP3]	...(((((((((....((((((((&))))))))---.)))))))))...	UCGGCUCAAAAGUUUCAUCGACAU&AUGUCGAU---UUUUUUGAGUAAU	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN2928_c0_g1_1179_TPlot.pdf
TRINITY_DN2928_c0_g1:384	si_s697	TRINITY_DN2928_c0_g1	373	393	384	-26.90	-18.10	0.672862453531599	6	1-8,393-386;10-15,384-379;17-21,377-373	9-9,385-385[SIL];16-16,378-378[SIL]	(((((.((((((.((((((((&)))))))).)))))).)))))	UUACUCAUGGAUGGACUGAUU&AAUUAGUCGAUUUAUUAGUGA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN2928_c0_g1_384_TPlot.pdf
TRINITY_DN2928_c0_g1:469	si_a803	TRINITY_DN2928_c0_g1	458	478	469	-36.30	-23.90	0.658402203856749	6	1-10,478-469;12-16,467-463;18-19,461-460	11-11,468-468[SIL];17-17,462-462[SIL];20-21,459-458[UP3]	..((.(((((.((((((((((&)))))))))).))))).))..	UGUCAUCGCUGUGGAUUGGAA&UUCCAAUCCGAAGCGAAGAAG	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a803_TRINITY_DN2928_c0_g1_469_TPlot.pdf
TRINITY_DN2928_c0_g1:470	si_a802	TRINITY_DN2928_c0_g1	459	479	470	-34.70	-24.30	0.70028818443804	5.5	1-11,479-469;13-17,467-463;19-20,461-460	12-12,468-468[SIL];18-18,462-462[SIL];21-21,459-459[UP3]	.((.(((((.(((((((((((&))))))))))).))))).)).	GUCAUCGCUGUGGAUUGGAAG&UUUCCAAUCCGAAGCGAAGAA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN2928_c0_g1_470_TPlot.pdf
TRINITY_DN2928_c0_g1:471	si_a801	TRINITY_DN2928_c0_g1	460	480	471	-34.60	-24.50	0.708092485549133	5	2-12,479-469;14-18,467-463;20-21,461-460	1-1,480-480[UP5];13-13,468-468[SIL];19-19,462-462[SIL]	((.(((((.(((((((((((.&.))))))))))).))))).))	UCAUCGCUGUGGAUUGGAAGG&UUUUCCAAUCCGAAGCGAAGA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN2928_c0_g1_471_TPlot.pdf
TRINITY_DN2928_c0_g1:472	si_a800	TRINITY_DN2928_c0_g1	461	481	472	-33.70	-23.50	0.697329376854599	7.5	3-13,479-469;15-19,467-463	1-2,481-480[UP5];14-14,468-468[SIL];20-21,462-461[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	CAUCGCUGUGGAUUGGAAGGA&AUUUUCCAAUCCGAAGCGAAG	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN2928_c0_g1_472_TPlot.pdf
TRINITY_DN2928_c0_g1:474	si_a798	TRINITY_DN2928_c0_g1	463	483	474	-34.10	-23.30	0.683284457478006	9.5	5-15,479-469;17-21,467-463	1-4,483-480[UP5];16-16,468-468[SIL]	(((((.(((((((((((....&....))))))))))).)))))	UCGCUGUGGAUUGGAAGGAAC&CUAUUUUCCAAUCCGAAGCGA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN2928_c0_g1_474_TPlot.pdf
TRINITY_DN29290_c0_g1:76	si_s440	TRINITY_DN29290_c0_g1	65	84	76	-21.60	-16.70	0.773148148148148	6	1-7,84-78;9-20,77-66	8-8,x-x[BULq];21-21,65-65[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	GUGUUAUAUGUAA-GUGUGAU&AUUACAUAUUAUAUAUAACAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN29290_c0_g1_76_TPlot.pdf
TRINITY_DN29329_c0_g1:1051	si_a784	TRINITY_DN29329_c0_g1	1036	1060	1051	-24.70	-16.46	0.666396761133603	16	2-11,1059-1050;14-20,1043-1037	1-1,1060-1060[UP5];12-13,1049-1044[AILt];21-21,1036-1036[UP3]	.(((((((......((((((((((.&.))))))))))----..))))))).	UGGAUAGAUUCUGUGAUAGAGGAGA&ACUCUUCUAUU----UUUCUAUUUU	2	0.999999999993687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN29329_c0_g1_1051_TPlot.pdf
TRINITY_DN29329_c0_g1:499	si_s64	TRINITY_DN29329_c0_g1	488	508	499	-24.10	-16.70	0.692946058091286	6.5	3-12,506-497;14-21,495-488	1-2,508-507[UP5];13-13,496-496[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GAAGAAGAAAGAAGUUGUUUC&UUAGCAACUUCUAUUUUUUUU	4	0.99999881361456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN29329_c0_g1_499_TPlot.pdf
TRINITY_DN29329_c0_g1:686	si_a327	TRINITY_DN29329_c0_g1	675	692	686	-28.40	-19.20	0.676056338028169	9	1-5,692-688;9-17,687-679;19-21,677-675	6-8,x-x[BULq];18-18,678-678[SIL]	(((.(((((((((---(((((&)))))...))))))))).)))	GGAGAAGGAAUGA---GAUCA&UGAUUUUUUUAUUCCUUGUCC	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN29329_c0_g1_686_TPlot.pdf
TRINITY_DN29329_c0_g1:687	si_a326	TRINITY_DN29329_c0_g1	676	693	687	-26.20	-17.10	0.652671755725191	9	1-6,693-688;10-18,687-679;20-21,677-676	7-9,x-x[BULq];19-19,678-678[SIL]	((.(((((((((---((((((&))))))...))))))))).))	GAGAAGGAAUGA---GAUCAU&AUGAUUUUUUUAUUCCUUGUC	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN29329_c0_g1_687_TPlot.pdf
TRINITY_DN29329_c0_g2:239	si_s484	TRINITY_DN29329_c0_g2	229	248	239	-20.50	-14.00	0.682926829268293	8.5	1-10,248-239;14-21,236-229	11-13,238-237[AILq]	((((((((..-((((((((((&))))))))))...))))))))	UUGUAUUUCU-UGAAUGUGGG&CCUAUAUUUAUUUAAAUAUAA	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN29329_c0_g2_239_TPlot.pdf
TRINITY_DN29329_c0_g2:240	si_s483	TRINITY_DN29329_c0_g2	230	249	240	-21.40	-14.60	0.682242990654206	7.5	1-11,249-239;15-21,236-230	12-14,238-237[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	UGUAUUUCU-UGAAUGUGGGA&UCCUAUAUUUAUUUAAAUAUA	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN29329_c0_g2_240_TPlot.pdf
TRINITY_DN2932_c0_g1:1884	si_a298	TRINITY_DN2932_c0_g1	1873	1893	1884	-28.10	-19.60	0.697508896797153	12.5	7-16,1887-1878;18-21,1876-1873	1-6,1893-1888[UP5];17-17,1877-1877[SIL]	((((.((((((((((......&......)))))))))).))))	UCCAUGCGGAUCUUUAUUCGA&UUUAAAAAAGAUUCGCUUGGA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN2932_c0_g1_1884_TPlot.pdf
TRINITY_DN2932_c0_g1:193	si_a659	TRINITY_DN2932_c0_g1	181	203	193	-35.20	-23.92	0.679545454545455	8	1-6,203-198;7-12,196-191;16-21,186-181	x-x,197-197[BULt];13-15,190-187[AILt]	((((((....((((((.((((((&))))))-))))))-...))))))	GAGUCGCUUUGGCAUUCUCCCGA&UCGGGA-AAUGCC-UAUUGAUUC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN2932_c0_g1_193_TPlot.pdf
TRINITY_DN2932_c0_g1:2823	si_s58	TRINITY_DN2932_c0_g1	2812	2835	2823	-29.30	-19.12	0.652559726962457	12.5	1-8,2835-2828;11-19,2822-2814	9-10,2827-2823[AILt];20-21,2813-2812[UP3]	..(((((((((.....((((((((&))))))))---..)))))))))..	GUUGGAAGUUGAAGAGAACUUGAA&UUCAAGUU---AGCAACUUCUAUU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN2932_c0_g1_2823_TPlot.pdf
TRINITY_DN2932_c0_g1:2824	si_s57	TRINITY_DN2932_c0_g1	2813	2836	2824	-29.30	-19.52	0.666211604095563	12	1-9,2836-2828;12-20,2822-2814	10-11,2827-2823[AILt];21-21,2813-2813[UP3]	.(((((((((.....(((((((((&)))))))))---..))))))))).	UUGGAAGUUGAAGAGAACUUGAAG&UUUCAAGUU---AGCAACUUCUAU	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN2932_c0_g1_2824_TPlot.pdf
TRINITY_DN2932_c0_g1:2829	si_s55	TRINITY_DN2932_c0_g1	2815	2838	2829	-30.80	-20.22	0.656493506493506	11.5	2-11,2837-2828;14-21,2822-2815	1-1,2838-2838[UP5];12-13,2827-2823[AILt]	((((((((.....((((((((((.&.))))))))))---..))))))))	GGAAGUUGAAGAGAACUUGAAGUG&GAUUUCAAGUU---AGCAACUUCU	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN2932_c0_g1_2829_TPlot.pdf
TRINITY_DN2932_c0_g1:3956	si_s246	TRINITY_DN2932_c0_g1	3945	3965	3956	-31.70	-23.90	0.753943217665615	10	5-21,3961-3945	1-4,3965-3962[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUGUAUUGGGAAGUGUCGACU&AAUAGGCAUUUCCCGAUAUAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN2932_c0_g1_3956_TPlot.pdf
TRINITY_DN2932_c0_g1:996	si_a540	TRINITY_DN2932_c0_g1	985	1007	996	-34.00	-22.70	0.667647058823529	7.5	1-9,1007-999;10-12,996-994;14-20,992-986	x-x,998-997[BULt];13-13,993-993[SIL];21-21,985-985[UP3]	.(((((((.(((..(((((((((&)))))))))--))).))))))).	UAGAUGGGCUGAGGACCGAUCGC&GCGAUCGGU--UCAAUCUAUUUC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a540_TRINITY_DN2932_c0_g1_996_TPlot.pdf
TRINITY_DN29336_c0_g1:213	si_a605	TRINITY_DN29336_c0_g1	202	222	213	-32.20	-21.30	0.661490683229814	11	5-6,218-217;8-20,215-203	1-4,222-219[UP5];7-7,216-216[SIL];21-21,202-202[UP3]	.(((((((((((((.((....&....)).))))))))))))).	CGUCGAUUGGAGUUUCGUAAC&UUUUCGCAAUUCCAAUCGACU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN29336_c0_g1_213_TPlot.pdf
TRINITY_DN2933_c0_g1:800	si_a53	TRINITY_DN2933_c0_g1	790	809	800	-39.00	-28.80	0.738461538461539	7.5	1-5,809-805;7-10,803-800;12-21,799-790	6-6,804-804[SIL];11-11,x-x[BULq]	((((((((((-((((.(((((&))))).)))).))))))))))	GAGAGGCGGG-CGACGUCUGG&CUAGGAGUCGACUCGCUUCUU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN2933_c0_g1_800_TPlot.pdf
TRINITY_DN2933_c0_g1:803	si_s376	TRINITY_DN2933_c0_g1	791	818	803	-42.50	-27.70	0.651764705882353	20	2-7,817-812;8-11,805-802;12-20,800-792	1-1,818-818[UP5];x-x,811-806[BULt];x-x,801-801[BULt];21-21,791-791[UP3]	.(((((((((.((((......((((((.&.))))))------))))-))))))))).	AGAGGCGGGCGACGUCUGGGAGGGCGGC&AUCGCUC------GCGU-GUCCGCCUUA	4	0.999999198518655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN2933_c0_g1_803_TPlot.pdf
TRINITY_DN2934_c0_g1:1378	si_a325	TRINITY_DN2934_c0_g1	1366	1387	1378	-25.90	-17.10	0.66023166023166	6.5	2-9,1386-1379;11-13,1377-1375;14-21,1373-1366	1-1,1387-1387[UP5];10-10,1378-1378[SIL];x-x,1374-1374[BULt]	((((((((.(((.((((((((.&.)))))))).)))-))))))))	ACAAGGAGUUAACGAAAUCGUC&CAUGAUUUUUUUA-UUCCUUGU	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN2934_c0_g1_1378_TPlot.pdf
TRINITY_DN2934_c0_g1:1400	si_a764	TRINITY_DN2934_c0_g1	1389	1409	1400	-28.90	-19.30	0.667820069204152	10.5	3-7,1407-1403;9-16,1401-1394;19-19,1391-1391	1-2,1409-1408[UP5];8-8,1402-1402[SIL];17-18,1393-1392[SIL];20-21,1390-1389[UP3]	..(..((((((((.(((((..&..))))).))))))))..)..	GCGUUUCAGUCAAUGACCCGU&UUGGGUUUUUGAUUGAUUCAA	3	0.999999403778522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN2934_c0_g1_1400_TPlot.pdf
TRINITY_DN2934_c0_g1:1401	si_a763	TRINITY_DN2934_c0_g1	1390	1410	1401	-28.80	-19.30	0.670138888888889	11.5	4-8,1407-1403;10-17,1401-1394;20-20,1391-1391	1-3,1410-1408[UP5];9-9,1402-1402[SIL];18-19,1393-1392[SIL];21-21,1390-1390[UP3]	.(..((((((((.(((((...&...))))).))))))))..).	CGUUUCAGUCAAUGACCCGUU&UUUGGGUUUUUGAUUGAUUCA	2	0.999982268446539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN2934_c0_g1_1401_TPlot.pdf
TRINITY_DN2934_c0_g1:1428	si_a735	TRINITY_DN2934_c0_g1	1414	1437	1428	-41.70	-27.20	0.652278177458034	9.5	4-13,1434-1425;14-20,1421-1415	1-3,1437-1435[UP5];x-x,1424-1422[BULt];21-21,1414-1414[UP3]	.(((((((...((((((((((...&...))))))))))---))))))).	AAUGGCCGCUUGGGGUAAAGACCA&GCAUCUUUACCCC---UGGCCAUG	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN2934_c0_g1_1428_TPlot.pdf
TRINITY_DN2934_c0_g1:1511	si_s667	TRINITY_DN2934_c0_g1	1499	1521	1511	-28.90	-18.80	0.650519031141869	10	1-7,1521-1515;9-14,1512-1507;15-19,1505-1501	8-8,1514-1513[AILt];x-x,1506-1506[BULt];20-21,1500-1499[UP3]	..(((((.((((((..(((((((&)))))))-.))))))-)))))..	GAUCUGUCAGUCGAAAUCGGUCC&GGAUCGA-AUUGAUU-AUAGAAA	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN2934_c0_g1_1511_TPlot.pdf
TRINITY_DN2935_c0_g1:1312	si_s75	TRINITY_DN2935_c0_g1	1301	1321	1312	-24.00	-16.00	0.666666666666667	13	7-12,1315-1310;14-21,1308-1301	1-6,1321-1316[UP5];13-13,1309-1309[SIL]	((((((((.((((((......&......)))))).))))))))	GGAGAGGAUAGAAAACUUACA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN2935_c0_g1_1312_TPlot.pdf
TRINITY_DN2938_c0_g1:680	si_a412	TRINITY_DN2938_c0_g1	667	689	680	-18.30	-12.60	0.688524590163934	6	1-15,689-675;16-21,672-667	x-x,674-673[BULt]	((((((..(((((((((((((((&)))))))))))))))--))))))	UAUUUAGUUUUGGAUGUAAAUAA&UUGUUUAUAUUUAAA--UAAAUA	4	0.999923241221074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2938_c0_g1_680_TPlot.pdf
TRINITY_DN2938_c0_g1:681	si_a411	TRINITY_DN2938_c0_g1	668	690	681	-17.90	-11.80	0.659217877094972	5.5	1-16,690-675;17-21,672-668	x-x,674-673[BULt]	(((((..((((((((((((((((&))))))))))))))))--)))))	AUUUAGUUUUGGAUGUAAAUAAA&UUUGUUUAUAUUUAAA--UAAAU	3	0.999999999995625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN2938_c0_g1_681_TPlot.pdf
TRINITY_DN2938_c0_g1:682	si_a410	TRINITY_DN2938_c0_g1	671	691	682	-17.80	-11.90	0.668539325842697	8	2-17,690-675	1-1,691-691[UP5];18-21,674-671[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAGUUUUGGAUGUAAAUAAAU&UUUUGUUUAUAUUUAAAUAAA	2	0.99999999276185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2938_c0_g1_682_TPlot.pdf
TRINITY_DN2938_c0_g1:688	si_a404	TRINITY_DN2938_c0_g1	677	696	688	-21.70	-15.00	0.691244239631336	5.5	1-9,696-688;11-21,687-677	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	UGGAUGUAAAU-AAAUAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999998626374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2938_c0_g1_688_TPlot.pdf
TRINITY_DN293_c0_g1:376	si_s477	TRINITY_DN293_c0_g1	365	385	376	-27.10	-18.50	0.682656826568266	7.5	1-14,385-372;17-20,369-366	15-16,371-370[SIL];21-21,365-365[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	GAGGUUUGUAUGGGGUUCGUU&AACGGAUCCUAUAUUUAUUUA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN293_c0_g1_376_TPlot.pdf
TRINITY_DN293_c0_g1:477	si_a311	TRINITY_DN293_c0_g1	467	486	477	-32.70	-22.90	0.700305810397553	6.5	1-6,486-481;8-11,479-476;13-19,475-469	7-7,480-480[SIL];12-12,x-x[BULq];20-21,468-467[UP3]	..(((((((-((((.((((((&)))))).)))).)))))))..	AUUCGUGGA-AAAUGCAAGCG&CGCUUGGAUUUAUCCAUGAUU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN293_c0_g1_477_TPlot.pdf
TRINITY_DN293_c0_g1:64	si_a451	TRINITY_DN293_c0_g1	53	73	64	-23.60	-16.80	0.711864406779661	6.5	1-16,73-58	17-21,57-53[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAGUGAUAGCAACAAUUAUUU&AGAUAAUUGUUGUUAUAUAUA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN293_c0_g1_64_TPlot.pdf
TRINITY_DN293_c0_g1:65	si_a450	TRINITY_DN293_c0_g1	54	74	65	-25.20	-17.10	0.678571428571429	6.5	2-17,73-58	1-1,74-74[UP5];18-21,57-54[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGUGAUAGCAACAAUUAUUUA&GAGAUAAUUGUUGUUAUAUAU	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN293_c0_g1_65_TPlot.pdf
TRINITY_DN293_c0_g1:66	si_a449	TRINITY_DN293_c0_g1	55	75	66	-25.70	-17.10	0.665369649805448	7.5	3-18,73-58	1-2,75-74[UP5];19-21,57-55[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUGAUAGCAACAAUUAUUUAU&UGAGAUAAUUGUUGUUAUAUA	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN293_c0_g1_66_TPlot.pdf
TRINITY_DN293_c0_g1:68	si_a447	TRINITY_DN293_c0_g1	57	77	68	-25.70	-17.20	0.669260700389105	6.5	1-2,77-76;5-20,73-58	3-4,75-74[SIL];21-21,57-57[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	GAUAGCAACAAUUAUUUAUUA&UAUGAGAUAAUUGUUGUUAUA	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN293_c0_g1_68_TPlot.pdf
TRINITY_DN293_c0_g1:69	si_a446	TRINITY_DN293_c0_g1	58	78	69	-25.50	-18.10	0.709803921568627	5.5	1-3,78-76;6-21,73-58	4-5,75-74[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	AUAGCAACAAUUAUUUAUUAU&AUAUGAGAUAAUUGUUGUUAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN293_c0_g1_69_TPlot.pdf
TRINITY_DN2941_c0_g1:766	si_a618	TRINITY_DN2941_c0_g1	755	775	766	-33.10	-22.30	0.673716012084592	7.5	3-14,773-762;16-19,760-757;21-21,755-755	1-2,775-774[UP5];15-15,761-761[SIL];20-20,756-756[SIL]	(.((((.((((((((((((..&..)))))))))))).)))).)	AGAUGAGACGCCUGGUUGAAU&AAUCGACUAGGCGUAUUAUGU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a618_TRINITY_DN2941_c0_g1_766_TPlot.pdf
TRINITY_DN2941_c0_g1:767	si_a617	TRINITY_DN2941_c0_g1	756	776	767	-34.00	-22.20	0.652941176470588	9.5	4-15,773-762;17-20,760-757	1-3,776-774[UP5];16-16,761-761[SIL];21-21,756-756[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	GAUGAGACGCCUGGUUGAAUA&CAAUCGACUAGGCGUAUUAUG	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a617_TRINITY_DN2941_c0_g1_767_TPlot.pdf
TRINITY_DN29426_c0_g1:343	si_s76	TRINITY_DN29426_c0_g1	332	352	343	-23.60	-17.20	0.728813559322034	15	7-21,346-332	1-6,352-347[UP5]	(((((((((((((((......&......)))))))))))))))	GGGAAGGGGGAGGAAUUCAGC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN29426_c0_g1_343_TPlot.pdf
TRINITY_DN2942_c0_g1:1029	si_a145	TRINITY_DN2942_c0_g1	1017	1039	1029	-28.10	-19.20	0.683274021352313	7.5	1-8,1039-1032;9-15,1030-1024;16-20,1022-1018	x-x,1031-1031[BULt];x-x,1023-1023[BULt];21-21,1017-1017[UP3]	.(((((.(((((((.((((((((&))))))))-)))))))-))))).	CCCUUAGGGACGACGGACGAUUG&UAAUCGUU-GUUGUUU-UAAGGU	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN2942_c0_g1_1029_TPlot.pdf
TRINITY_DN2942_c0_g1:1106	si_s79	TRINITY_DN2942_c0_g1	1094	1115	1106	-26.20	-17.60	0.67175572519084	9	1-9,1115-1107;11-11,1105-1105;12-20,1103-1095	10-10,1106-1106[SIL];x-x,1104-1104[BULt];21-21,1094-1094[UP3]	.(((((((((.(.(((((((((&))))))))).)-))))))))).	UGGAAGAAGGUGCAGGAAGAGA&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2942_c0_g1_1106_TPlot.pdf
TRINITY_DN2942_c0_g1:1107	si_s78	TRINITY_DN2942_c0_g1	1095	1116	1107	-26.20	-17.80	0.679389312977099	9	2-10,1115-1107;12-12,1105-1105;13-21,1103-1095	1-1,1116-1116[UP5];11-11,1106-1106[SIL];x-x,1104-1104[BULt]	(((((((((.(.(((((((((.&.))))))))).)-)))))))))	GGAAGAAGGUGCAGGAAGAGAU&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN2942_c0_g1_1107_TPlot.pdf
TRINITY_DN2942_c0_g1:1108	si_s77	TRINITY_DN2942_c0_g1	1096	1117	1108	-25.50	-16.70	0.654901960784314	9.5	3-11,1115-1107;13-13,1105-1105;14-21,1103-1096	1-2,1117-1116[UP5];12-12,1106-1106[SIL];x-x,1104-1104[BULt]	((((((((.(.(((((((((..&..))))))))).)-))))))))	GAAGAAGGUGCAGGAAGAGAUC&UUUUUUUUCUUUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2942_c0_g1_1108_TPlot.pdf
TRINITY_DN2942_c0_g1:424	si_a406	TRINITY_DN2942_c0_g1	413	433	424	-19.80	-13.70	0.691919191919192	9.5	1-4,433-430;7-19,427-415	5-6,429-428[SIL];20-21,414-413[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	GAUGAAUAUGAACAGCUCAGU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2942_c0_g1_424_TPlot.pdf
TRINITY_DN2942_c0_g1:426	si_a404	TRINITY_DN2942_c0_g1	415	435	426	-21.70	-17.80	0.820276497695853	7	1-6,435-430;9-21,427-415	7-8,429-428[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UGAAUAUGAACAGCUCAGUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN2942_c0_g1_426_TPlot.pdf
TRINITY_DN2942_c0_g1:429	si_a401	TRINITY_DN2942_c0_g1	418	438	429	-22.60	-16.60	0.734513274336283	8.5	2-9,437-430;12-21,427-418	1-1,438-438[UP5];10-11,429-428[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	AUAUGAACAGCUCAGUUCUGA&AUAGAAUUGUUUUGUUUAUAU	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN2942_c0_g1_429_TPlot.pdf
TRINITY_DN2942_c0_g1:430	si_a400	TRINITY_DN2942_c0_g1	419	439	430	-22.80	-15.40	0.675438596491228	10	3-10,437-430;13-21,427-419	1-2,439-438[UP5];11-12,429-428[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	UAUGAACAGCUCAGUUCUGAA&UAUAGAAUUGUUUUGUUUAUA	3	0.999999836795323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN2942_c0_g1_430_TPlot.pdf
TRINITY_DN2943_c0_g1:1115	si_s808	TRINITY_DN2943_c0_g1	1104	1124	1115	-28.60	-20.30	0.70979020979021	6	1-12,1124-1113;14-18,1111-1107	13-13,1112-1112[SIL];19-21,1106-1104[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UAUAGAAAUGGUAAUGGAGAU&AUCUUCGUUACCUUUUCUUAA	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN2943_c0_g1_1115_TPlot.pdf
TRINITY_DN2943_c0_g1:1116	si_s807	TRINITY_DN2943_c0_g1	1105	1125	1116	-28.90	-20.30	0.70242214532872	6	2-13,1124-1113;15-19,1111-1107	1-1,1125-1125[UP5];14-14,1112-1112[SIL];20-21,1106-1105[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AUAGAAAUGGUAAUGGAGAUU&UAUCUUCGUUACCUUUUCUUA	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN2943_c0_g1_1116_TPlot.pdf
TRINITY_DN2945_c0_g1:3174	si_a395	TRINITY_DN2945_c0_g1	3163	3185	3174	-24.70	-16.10	0.651821862348178	6.5	2-7,3184-3179;8-21,3176-3163	1-1,3185-3185[UP5];x-x,3178-3177[BULt]	((((((((((((((..((((((.&.))))))--))))))))))))))	AUAAAACAAUUUUAACUAUUCUA&AAGAAUA--UAGAAUUGUUUUGU	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN2945_c0_g1_3174_TPlot.pdf
TRINITY_DN2945_c0_g1:3269	si_a639	TRINITY_DN2945_c0_g1	3258	3277	3269	-23.60	-15.50	0.656779661016949	7	1-2,3277-3276;4-17,3275-3262	3-3,x-x[BULq];18-21,3261-3258[UP3]	....((((((((((((((-((&)).))))))))))))))....	UACGAUUACUCAAAAAAG-CG&CGAUUUUUUUGAGUAAUAUAU	4	0.999999998980839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN2945_c0_g1_3269_TPlot.pdf
TRINITY_DN29460_c0_g1:4661	si_s74	TRINITY_DN29460_c0_g1	4649	4670	4661	-25.00	-18.50	0.74	5	1-16,4670-4655;17-19,4653-4651	x-x,4654-4654[BULt];20-21,4650-4649[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	UCAAGAGAAAGAGAAAAAAUGG&CUAUUUUUUUUCUUUC-CUUUC	4	0.999999858471156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN29460_c0_g1_4661_TPlot.pdf
TRINITY_DN29460_c0_g1:4663	si_s72	TRINITY_DN29460_c0_g1	4651	4672	4663	-24.10	-18.50	0.767634854771784	6	3-18,4670-4655;19-21,4653-4651	1-2,4672-4671[UP5];x-x,4654-4654[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	AAGAGAAAGAGAAAAAAUGGUC&UUCUAUUUUUUUUCUUUC-CUU	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN29460_c0_g1_4663_TPlot.pdf
TRINITY_DN29460_c0_g1:4666	si_s69	TRINITY_DN29460_c0_g1	4655	4675	4666	-23.40	-16.90	0.722222222222222	10.5	6-21,4670-4655	1-5,4675-4671[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAAGAGAAAAAAUGGUCGCG&AACUUCUAUUUUUUUUCUUUC	4	0.999999999999617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN29460_c0_g1_4666_TPlot.pdf
TRINITY_DN29460_c0_g1:4927	si_a185	TRINITY_DN29460_c0_g1	4912	4936	4927	-31.70	-21.30	0.67192429022082	11	1-11,4936-4926;12-16,4921-4917;18-20,4915-4913	x-x,4925-4922[BULt];17-17,4916-4916[SIL];21-21,4912-4912[UP3]	.(((.(((((....(((((((((((&)))))))))))----))))).))).	CGAAAAGGGAACUAAAGAUGUUAUC&GAUAAUAUCUU----UCCCUGUUCA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN29460_c0_g1_4927_TPlot.pdf
TRINITY_DN29460_c0_g1:5079	si_a768	TRINITY_DN29460_c0_g1	5068	5088	5079	-28.40	-18.60	0.654929577464789	7.5	2-6,5087-5083;8-11,5081-5078;13-21,5076-5068	1-1,5088-5088[UP5];7-7,5082-5082[SIL];12-12,5077-5077[SIL]	(((((((((.((((.(((((.&.))))).)))).)))))))))	AGAGUUGGAACAAUGGAGAAA&GUUUUUGAUUGAUUCAACUCU	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN29460_c0_g1_5079_TPlot.pdf
TRINITY_DN29460_c0_g1:5278	si_s77	TRINITY_DN29460_c0_g1	5265	5287	5278	-25.50	-17.00	0.666666666666667	10	3-10,5285-5278;11-20,5275-5266	1-2,5287-5286[UP5];x-x,5277-5276[BULt];21-21,5265-5265[UP3]	.((((((((((..((((((((..&..))))))))--)))))))))).	UAAGAAAGGAACUAGAGAAAGCG&UUUUUUUUCU--UUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN29460_c0_g1_5278_TPlot.pdf
TRINITY_DN29460_c0_g1:5279	si_s76	TRINITY_DN29460_c0_g1	5266	5288	5279	-23.60	-17.00	0.720338983050847	11	4-11,5285-5278;12-21,5275-5266	1-3,5288-5286[UP5];x-x,5277-5276[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	AAGAAAGGAACUAGAGAAAGCGU&AUUUUUUUUCU--UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN29460_c0_g1_5279_TPlot.pdf
TRINITY_DN29460_c0_g1:5280	si_s75	TRINITY_DN29460_c0_g1	5267	5289	5280	-24.00	-17.00	0.708333333333333	9	1-3,5289-5287;5-12,5285-5278;13-21,5275-5267	4-4,5286-5286[SIL];x-x,5277-5276[BULt]	(((((((((..((((((((.(((&))).))))))))--)))))))))	AGAAAGGAACUAGAGAAAGCGUA&UAUUUUUUUUCU--UUCCUUUCU	2	0.99999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN29460_c0_g1_5280_TPlot.pdf
TRINITY_DN29460_c0_g1:5476	si_s72	TRINITY_DN29460_c0_g1	5465	5485	5476	-24.10	-19.30	0.800829875518672	6	1-18,5485-5468	19-21,5467-5465[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAAGAGAGAAGGAAAAUAGAG&UUCUAUUUUUUUUCUUUCCUU	2	0.982048939284292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN29460_c0_g1_5476_TPlot.pdf
TRINITY_DN29460_c0_g1:5477	si_s71	TRINITY_DN29460_c0_g1	5466	5486	5477	-25.70	-22.40	0.8715953307393	5.5	1-19,5486-5468	20-21,5467-5466[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAGAGAGAAGGAAAAUAGAGG&CUUCUAUUUUUUUUCUUUCCU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN29460_c0_g1_5477_TPlot.pdf
TRINITY_DN29460_c0_g1:5478	si_s70	TRINITY_DN29460_c0_g1	5467	5487	5478	-25.80	-22.40	0.868217054263566	5	2-20,5486-5468	1-1,5487-5487[UP5];21-21,5467-5467[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGAGAGAAGGAAAAUAGAGGA&ACUUCUAUUUUUUUUCUUUCC	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN29460_c0_g1_5478_TPlot.pdf
TRINITY_DN29460_c0_g1:5480	si_s68	TRINITY_DN29460_c0_g1	5469	5489	5480	-23.10	-19.20	0.831168831168831	7.5	4-21,5486-5469	1-3,5489-5487[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGAGAAGGAAAAUAGAGGAGG&CAACUUCUAUUUUUUUUCUUU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN29460_c0_g1_5480_TPlot.pdf
TRINITY_DN29460_c0_g1:5481	si_a783	TRINITY_DN29460_c0_g1	5470	5490	5481	-24.70	-19.70	0.797570850202429	8.5	3-17,5488-5474	1-2,5490-5489[UP5];18-21,5473-5470[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAGAAGGAAAAUAGAGGAGGU&AACUCUUCUAUUUUUCUAUUU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN29460_c0_g1_5481_TPlot.pdf
TRINITY_DN29460_c0_g1:5485	si_a779	TRINITY_DN29460_c0_g1	5474	5494	5485	-27.00	-21.60	0.8	6.5	3-5,5492-5490;7-21,5488-5474	1-2,5494-5493[UP5];6-6,5489-5489[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AGGAAAAUAGAGGAGGUGAGA&AUUCAACUCUUCUAUUUUUCU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN29460_c0_g1_5485_TPlot.pdf
TRINITY_DN29460_c0_g1:5542	si_a785	TRINITY_DN29460_c0_g1	5531	5551	5542	-25.90	-18.50	0.714285714285714	6	2-11,5550-5541;13-20,5539-5532	1-1,5551-5551[UP5];12-12,5540-5540[SIL];21-21,5531-5531[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	AAGAGUAGACAAGUAGAAGAA&CUCUUCUAUUUUUCUAUUUUC	3	0.999999901613011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN29460_c0_g1_5542_TPlot.pdf
TRINITY_DN2946_c0_g1:2888	si_s894	TRINITY_DN2946_c0_g1	2876	2897	2888	-29.10	-19.50	0.670103092783505	11	5-17,2893-2881;18-21,2879-2876	1-4,2897-2894[UP5];x-x,2880-2880[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GAAUAUGAGGAGAAGGUCGCUA&AAUAGGCUUUCUCUUCA-AUUU	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN2946_c0_g1_2888_TPlot.pdf
TRINITY_DN2946_c0_g1:2947	si_s71	TRINITY_DN2946_c0_g1	2936	2956	2947	-25.70	-18.40	0.715953307392996	9	3-19,2954-2938	1-2,2956-2955[UP5];20-21,2937-2936[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUGAAAGAAGAGGAAUGGAUU&CUUCUAUUUUUUUUCUUUCCU	4	0.999999999999488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2946_c0_g1_2947_TPlot.pdf
TRINITY_DN2947_c0_g1:1198	si_a665	TRINITY_DN2947_c0_g1	1187	1210	1198	-29.60	-23.40	0.79054054054054	11	3-6,1208-1205;7-21,1201-1187	1-2,1210-1209[UP5];x-x,1204-1202[BULt]	(((((((((((((((...((((..&..))))---)))))))))))))))	AGUGAGGAAUCAGUAUUUGGCAAU&AAUGCC---UAUUGAUUCCUUAUU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN2947_c0_g1_1198_TPlot.pdf
TRINITY_DN2947_c0_g1:1199	si_a664	TRINITY_DN2947_c0_g1	1188	1211	1199	-29.60	-22.60	0.763513513513513	13	4-7,1208-1205;8-21,1201-1188	1-3,1211-1209[UP5];x-x,1204-1202[BULt]	((((((((((((((...((((...&...))))---))))))))))))))	GUGAGGAAUCAGUAUUUGGCAAUG&AAAUGCC---UAUUGAUUCCUUAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN2947_c0_g1_1199_TPlot.pdf
TRINITY_DN2947_c0_g1:497	si_a767	TRINITY_DN2947_c0_g1	486	505	497	-30.10	-21.90	0.727574750830565	8	1-3,505-503;6-19,501-488	4-5,502-502[AILq];20-21,487-486[UP3]	..((((((((((((((.-(((&)))..))))))))))))))..	UUGUUGAAUCGAUCGAU-ACC&GGUUUUUGAUUGAUUCAACUC	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN2947_c0_g1_497_TPlot.pdf
TRINITY_DN2947_c3_g1:52	si_s206	TRINITY_DN2947_c3_g1	40	61	52	-33.00	-23.80	0.721212121212121	8	1-10,61-52;12-19,49-42	11-11,51-50[AILt];20-21,41-40[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	UGUGAACGCACUCUGGUACGUU&AAUGUACCAG-UUGUGUUCGAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN2947_c3_g1_52_TPlot.pdf
TRINITY_DN29481_c0_g1:174	si_a759	TRINITY_DN29481_c0_g1	163	189	174	-32.60	-21.40	0.656441717791411	16	1-6,189-184;7-21,177-163	x-x,183-178[BULt]	(((((((((((((((......((((((&))))))------)))))))))))))))	UCGAUCAGAAACUUGGUGGGCAAGGAG&CUCCUU------UGGGUUUUUGAUUGA	0	0.354196244600691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN29481_c0_g1_174_TPlot.pdf
TRINITY_DN29483_c2_g1:1336	si_s194	TRINITY_DN29483_c2_g1	1325	1346	1336	-30.30	-20.30	0.66996699669967	7.5	2-3,1345-1344;5-9,1342-1338;10-20,1336-1326	1-1,1346-1346[UP5];4-4,1343-1343[SIL];x-x,1337-1337[BULt];21-21,1325-1325[UP3]	.(((((((((((.(((((.((.&.)).)))))-))))))))))).	AGGUAUAUUCCAUAAGUAUUCU&CGAUUAUUU-UGGAAUGUACCA	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN29483_c2_g1_1336_TPlot.pdf
TRINITY_DN2948_c0_g1:1036	si_a576	TRINITY_DN2948_c0_g1	1025	1045	1036	-28.70	-20.00	0.696864111498258	6.5	1-6,1045-1040;8-20,1038-1026	7-7,1039-1039[SIL];21-21,1025-1025[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	AUUUUGUUACAAGCUUAUGGU&AUCGUAUGUUUGUAACAAGAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN2948_c0_g1_1036_TPlot.pdf
TRINITY_DN2948_c0_g1:1037	si_a575	TRINITY_DN2948_c0_g1	1026	1046	1037	-28.60	-20.70	0.723776223776224	5.5	1-7,1046-1040;9-21,1038-1026	8-8,1039-1039[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	UUUUGUUACAAGCUUAUGGUU&AAUCGUAUGUUUGUAACAAGA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN2948_c0_g1_1037_TPlot.pdf
TRINITY_DN2948_c0_g1:1039	si_a573	TRINITY_DN2948_c0_g1	1028	1048	1039	-28.70	-22.50	0.78397212543554	6	2-9,1047-1040;11-21,1038-1028	1-1,1048-1048[UP5];10-10,1039-1039[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UUGUUACAAGCUUAUGGUUCU&UGAAUCGUAUGUUUGUAACAA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN2948_c0_g1_1039_TPlot.pdf
TRINITY_DN2948_c0_g1:1040	si_a572	TRINITY_DN2948_c0_g1	1029	1049	1040	-30.40	-21.60	0.710526315789474	7.5	3-10,1047-1040;12-21,1038-1029	1-2,1049-1048[UP5];11-11,1039-1039[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UGUUACAAGCUUAUGGUUCUC&GUGAAUCGUAUGUUUGUAACA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN2948_c0_g1_1040_TPlot.pdf
TRINITY_DN2948_c0_g1:364	si_s489	TRINITY_DN2948_c0_g1	353	373	364	-17.90	-12.80	0.715083798882682	10	1-6,373-368;8-18,366-356	7-7,367-367[SIL];19-21,355-353[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UCAGUUUAUGUUUAUGUGGGU&AUUUAUUUAAAUAUAAACAAA	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN2948_c0_g1_364_TPlot.pdf
TRINITY_DN2949_c0_g1:1961	si_a414	TRINITY_DN2949_c0_g1	1950	1970	1961	-18.10	-12.60	0.696132596685083	4.5	1-15,1970-1956;18-21,1953-1950	16-17,1955-1954[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UGUAAAUGUUUAAAUGUAAAU&GUUUAUAUUUAAAUAAAUAUA	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN2949_c0_g1_1961_TPlot.pdf
TRINITY_DN2949_c0_g1:1962	si_a413	TRINITY_DN2949_c0_g1	1951	1971	1962	-18.40	-12.60	0.684782608695652	7.5	1-16,1971-1956	17-21,1955-1951[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUAAAUGUUUAAAUGUAAAUA&UGUUUAUAUUUAAAUAAAUAU	2	0.986849030460239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN2949_c0_g1_1962_TPlot.pdf
TRINITY_DN2949_c0_g1:1963	si_a412	TRINITY_DN2949_c0_g1	1952	1972	1963	-18.30	-12.80	0.699453551912568	7.5	2-17,1971-1956	1-1,1972-1972[UP5];18-21,1955-1952[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAAAUGUUUAAAUGUAAAUAU&UUGUUUAUAUUUAAAUAAAUA	1	0.0810410104735084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN2949_c0_g1_1963_TPlot.pdf
TRINITY_DN2949_c0_g1:1965	si_a410	TRINITY_DN2949_c0_g1	1954	1974	1965	-17.80	-12.80	0.719101123595506	9.5	4-19,1971-1956	1-3,1974-1972[UP5];20-21,1955-1954[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAUGUUUAAAUGUAAAUAUAC&UUUUGUUUAUAUUUAAAUAAA	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN2949_c0_g1_1965_TPlot.pdf
TRINITY_DN294_c0_g1:1084	si_s155	TRINITY_DN294_c0_g1	1072	1093	1084	-42.00	-27.70	0.65952380952381	11	5-11,1089-1083;14-16,1080-1078;17-21,1076-1072	1-4,1093-1090[UP5];12-13,1082-1081[SIL];x-x,1077-1077[BULt]	(((((.(((..(((((((....&....)))))))..)))-)))))	CCCUGAGCCUAGAACCUCAUCC&AAAGGAGGUUCAUGGC-CAGGG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN294_c0_g1_1084_TPlot.pdf
TRINITY_DN294_c0_g1:2125	si_s492	TRINITY_DN294_c0_g1	2114	2134	2125	-20.10	-13.10	0.651741293532338	5	1-3,2134-2132;5-16,2130-2119;19-21,2116-2114	4-4,2131-2131[SIL];17-18,2118-2117[SIL]	(((..((((((((((((.(((&))).))))))))))))..)))	UGUGAUGUUUAUAUUUGCAUA&UAUUUAAAUAUAAACAAAACA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN294_c0_g1_2125_TPlot.pdf
TRINITY_DN294_c0_g1:2127	si_s490	TRINITY_DN294_c0_g1	2116	2136	2127	-17.80	-11.60	0.651685393258427	7	2-5,2135-2132;7-18,2130-2119	1-1,2136-2136[UP5];6-6,2131-2131[SIL];19-21,2118-2116[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UGAUGUUUAUAUUUGCAUAAU&UUUAUUUAAAUAUAAACAAAA	2	0.999071824285151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN294_c0_g1_2127_TPlot.pdf
TRINITY_DN2950_c0_g1:2845	si_a70	TRINITY_DN2950_c0_g1	2836	2854	2845	-23.90	-15.60	0.652719665271967	5	1-10,2854-2845;12-16,2844-2840;18-21,2839-2836	11-11,x-x[BULq];17-17,x-x[BULq]	((((-(((((-((((((((((&)))))))))).))))).))))	AAUG-GAAGC-AUUUGAGAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999999988670306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN2950_c0_g1_2845_TPlot.pdf
TRINITY_DN2950_c0_g1:2848	si_a67	TRINITY_DN2950_c0_g1	2838	2857	2848	-27.20	-20.90	0.768382352941176	5.5	1-13,2857-2845;15-20,2844-2839	14-14,x-x[BULq];21-21,2838-2838[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	UGGAAGC-AUUUGAGAGAGGC&GCUUCUUUCAAAUUGUUUUUC	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2950_c0_g1_2848_TPlot.pdf
TRINITY_DN2950_c0_g1:2850	si_a65	TRINITY_DN2950_c0_g1	2840	2859	2850	-27.70	-21.00	0.75812274368231	7	3-15,2857-2845;17-21,2844-2840	1-2,2859-2858[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	GAAGC-AUUUGAGAGAGGCUU&UCGCUUCUUUCAAAUUGUUUU	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN2950_c0_g1_2850_TPlot.pdf
TRINITY_DN2950_c0_g1:5213	si_s490	TRINITY_DN2950_c0_g1	5202	5222	5213	-17.80	-12.60	0.707865168539326	7	1-11,5222-5212;13-18,5210-5205	12-12,5211-5211[SIL];19-21,5204-5202[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AACUGUUUAAGUUUAGAUAAA&UUUAUUUAAAUAUAAACAAAA	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN2950_c0_g1_5213_TPlot.pdf
TRINITY_DN2950_c0_g1:5214	si_s489	TRINITY_DN2950_c0_g1	5203	5223	5214	-17.90	-13.60	0.759776536312849	5	1-12,5223-5212;14-19,5210-5205	13-13,5211-5211[SIL];20-21,5204-5203[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	ACUGUUUAAGUUUAGAUAAAU&AUUUAUUUAAAUAUAAACAAA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN2950_c0_g1_5214_TPlot.pdf
TRINITY_DN2950_c0_g1:5216	si_s487	TRINITY_DN2950_c0_g1	5205	5225	5216	-18.40	-13.30	0.722826086956522	5.5	3-14,5223-5212;16-21,5210-5205	1-2,5225-5224[UP5];15-15,5211-5211[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UGUUUAAGUUUAGAUAAAUUA&AUAUUUAUUUAAAUAUAAACA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN2950_c0_g1_5216_TPlot.pdf
TRINITY_DN2950_c0_g2:1064	si_s895	TRINITY_DN2950_c0_g2	1053	1078	1064	-31.10	-23.30	0.7491961414791	13.5	3-6,1076-1073;7-21,1067-1053	1-2,1078-1077[UP5];x-x,1072-1068[BULt]	(((((((((((((((.....((((..&..))))-----)))))))))))))))	GAAAUUGAGGAGAAAGGAUUGCCUUU&AUAGGC-----UUUCUCUUCAAUUUC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN2950_c0_g2_1064_TPlot.pdf
TRINITY_DN2950_c0_g2:915	si_a551	TRINITY_DN2950_c0_g2	903	924	915	-31.60	-20.60	0.651898734177215	5.5	3-16,922-909;17-18,907-906;20-21,904-903	1-2,924-923[UP5];x-x,908-908[BULt];19-19,905-905[SIL]	((.((.((((((((((((((..&..))))))))))))))-)).))	GGAGAUGAUGAAGAAAUAGAAA&AAUCUAUUUCUUUAUC-UCCCC	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN2950_c0_g2_915_TPlot.pdf
TRINITY_DN2951_c0_g1:1455	si_s51	TRINITY_DN2951_c0_g1	1444	1464	1455	-30.70	-20.10	0.654723127035831	8	2-4,1463-1461;7-20,1458-1445	1-1,1464-1464[UP5];5-6,1460-1459[SIL];21-21,1444-1444[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	AUUGCUGAUUUGAAAGACGAA&AUUGGAUUUCAAGUUAGCAAC	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN2951_c0_g1_1455_TPlot.pdf
TRINITY_DN2951_c0_g1:1456	si_s50	TRINITY_DN2951_c0_g1	1445	1465	1456	-29.00	-20.10	0.693103448275862	9	3-5,1463-1461;8-21,1458-1445	1-2,1465-1464[UP5];6-7,1460-1459[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	UUGCUGAUUUGAAAGACGAAU&AAUUGGAUUUCAAGUUAGCAA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN2951_c0_g1_1456_TPlot.pdf
TRINITY_DN2951_c0_g1:1457	si_s49	TRINITY_DN2951_c0_g1	1446	1466	1457	-29.30	-19.30	0.658703071672355	11	4-6,1463-1461;9-21,1458-1446	1-3,1466-1464[UP5];7-8,1460-1459[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	UGCUGAUUUGAAAGACGAAUU&UAAUUGGAUUUCAAGUUAGCA	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN2951_c0_g1_1457_TPlot.pdf
TRINITY_DN2951_c0_g3:1167	si_s805	TRINITY_DN2951_c0_g3	1156	1176	1167	-28.60	-19.60	0.685314685314685	6	1-9,1176-1168;11-19,1166-1158	10-10,1167-1167[SIL];20-21,1157-1156[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AUGGAAGGUAAAGAAGAUGAA&UUUAUCUUCGUUACCUUUUCU	4	0.999999387155625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN2951_c0_g3_1167_TPlot.pdf
TRINITY_DN29530_c0_g3:1522	si_a123	TRINITY_DN29530_c0_g3	1512	1531	1522	-26.60	-18.90	0.710526315789474	4.5	1-13,1531-1519;16-16,1516-1516;18-21,1515-1512	14-15,1518-1517[SIL];17-17,x-x[BULq]	((((-(..(((((((((((((&)))))))))))))..).))))	UUGC-AGGGCUAUAGAACAAG&CUUGUUUUAUAGCAAUAGUAA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN29530_c0_g3_1522_TPlot.pdf
TRINITY_DN2954_c0_g1:3601	si_s73	TRINITY_DN2954_c0_g1	3590	3609	3601	-24.00	-16.20	0.675	8.5	1-3,3609-3607;5-18,3606-3593	4-4,x-x[BULq];19-21,3592-3590[UP3]	...((((((((((((((-(((&))).))))))))))))))...	GUUGGGAAGAAAAAGGA-GGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN2954_c0_g1_3601_TPlot.pdf
TRINITY_DN2954_c0_g1:5515	si_s293	TRINITY_DN2954_c0_g1	5504	5524	5515	-34.30	-23.00	0.670553935860058	9	1-12,5524-5513;15-20,5510-5505	13-14,5512-5511[SIL];21-21,5504-5504[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	CUCGCGGCCUCGGUCGGCUGG&CUAGUCGAUUGGAAUUGCGAA	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN2954_c0_g1_5515_TPlot.pdf
TRINITY_DN2954_c0_g1:8090	si_s560	TRINITY_DN2954_c0_g1	8078	8099	8090	-30.20	-20.00	0.662251655629139	11	5-14,8095-8086;15-17,8084-8082;20-21,8079-8078	1-4,8099-8096[UP5];x-x,8085-8085[BULt];18-19,8081-8080[SIL]	((..(((.((((((((((....&....))))))))))-)))..))	CCGGGUCGCCGAGAAUAUAUAC&AUUAAUAUUUUCGG-GACAAGG	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s560_TRINITY_DN2954_c0_g1_8090_TPlot.pdf
TRINITY_DN2954_c0_g1:8245	si_a373	TRINITY_DN2954_c0_g1	8235	8254	8245	-28.00	-18.70	0.667857142857143	6.5	1-10,8254-8245;12-12,8243-8243;14-19,8242-8237	11-11,8244-8244[SIL];13-13,x-x[BULq];20-21,8236-8235[UP3]	..((((((-(.((((((((((&)))))))))).).))))))..	ACUCGAAG-CUUUUUUGGUCC&GGAUCAAAAAUGAUUUCGAAU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN2954_c0_g1_8245_TPlot.pdf
TRINITY_DN2954_c0_g2:1643	si_s543	TRINITY_DN2954_c0_g2	1631	1652	1643	-28.80	-19.22	0.667361111111111	12	1-10,1652-1643;14-18,1638-1634	11-13,1642-1639[AILt];19-21,1633-1631[UP3]	...(((((....((((((((((&))))))))))-...)))))...	UCUUUCUAGCUAUGGUCGGGUC&GAUCCGAUCA-AAAUAGAAUUA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN2954_c0_g2_1643_TPlot.pdf
TRINITY_DN2954_c0_g2:759	si_a511	TRINITY_DN2954_c0_g2	746	768	759	-38.40	-25.80	0.671875	8.5	1-10,768-759;12-14,757-755;16-20,751-747	11-11,758-758[SIL];15-15,754-752[AILt];21-21,746-746[UP3]	.(((((...(((.((((((((((&)))))))))).)))--.))))).	ACGCCUCUCGCGAUCCGAGGAAG&CUUCCUUGGAAUGU--AAGGCGG	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN2954_c0_g2_759_TPlot.pdf
TRINITY_DN29562_c0_g2:157	si_a410	TRINITY_DN29562_c0_g2	145	166	157	-17.80	-12.60	0.707865168539326	7	4-17,163-150;18-21,148-145	1-3,166-164[UP5];x-x,149-149[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	UUUAUUUUAAAUAUAGACACAA&UUUUGUUUAUAUUUAAA-UAAA	4	0.99999860059085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN29562_c0_g2_157_TPlot.pdf
TRINITY_DN2956_c0_g1:601	si_a46	TRINITY_DN2956_c0_g1	590	612	601	-42.10	-27.94	0.663657957244656	13	1-3,612-610;5-9,609-605;11-20,600-591	4-4,x-x[BULq];10-10,604-601[AILt];21-21,590-590[UP3]	.((((((((((....(((((-(((&))).)))))---.)))))))))).	AAGUCGACUCCAACAGGACC-GCC&GGUAGGUCU---AGGAGUCGACUC	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN2956_c0_g1_601_TPlot.pdf
TRINITY_DN29574_c0_g1:1923	si_a785	TRINITY_DN29574_c0_g1	1910	1932	1923	-25.90	-19.00	0.733590733590734	10	1-11,1932-1922;12-20,1919-1911	x-x,1921-1920[BULt];21-21,1910-1910[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	AAGAAUGGAAAAGAAUGGGGGAG&CUCUUCUAUUU--UUCUAUUUUC	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN29574_c0_g1_1923_TPlot.pdf
TRINITY_DN2957_c0_g1:1264	si_a143	TRINITY_DN2957_c0_g1	1252	1274	1264	-25.10	-16.60	0.661354581673307	7	2-6,1273-1269;7-14,1267-1260;15-21,1258-1252	1-1,1274-1274[UP5];x-x,1268-1268[BULt];x-x,1259-1259[BULt]	(((((((.((((((((.(((((.&.)))))-))))))))-)))))))	CUUGAAGUCAGCAAUGAAUUAAA&AUUAAU-CGUUGUUG-UUUUAAG	3	0.999999532366031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN2957_c0_g1_1264_TPlot.pdf
TRINITY_DN29584_c0_g1:321	si_a455	TRINITY_DN29584_c0_g1	310	330	321	-21.10	-14.80	0.701421800947867	8	1-4,330-327;6-9,325-322;11-21,320-310	5-5,326-326[SIL];10-10,321-321[SIL]	(((((((((((.((((.((((&)))).)))).)))))))))))	GUAUUGUAUGUUACAAGGGUU&AAUUGUUGUUAUAUAUAAUAU	4	0.99976599203554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN29584_c0_g1_321_TPlot.pdf
TRINITY_DN2958_c0_g1:1676	si_s3	TRINITY_DN2958_c0_g1	1664	1686	1676	-21.20	-15.00	0.707547169811321	5.5	1-6,1686-1681;7-13,1679-1673;14-21,1671-1664	x-x,1680-1680[BULt];x-x,1672-1672[BULt]	((((((((.(((((((.((((((&))))))-)))))))-))))))))	AGUGAUAAUUAAGUAAUUGUGAA&UUUAUA-UUACUUA-UUAUUACU	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN2958_c0_g1_1676_TPlot.pdf
TRINITY_DN2958_c0_g1:2544	si_s71	TRINITY_DN2958_c0_g1	2533	2554	2544	-25.70	-17.30	0.673151750972763	8.5	2-5,2553-2550;7-20,2547-2534	1-1,2554-2554[UP5];6-6,2549-2548[AILt];21-21,2533-2533[UP3]	.((((((((((((((..((((.&.))))-.)))))))))))))).	UGGAAAGGAAGAAGAAAAGAAA&CUUCU-AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2958_c0_g1_2544_TPlot.pdf
TRINITY_DN2958_c0_g1:5217	si_a406	TRINITY_DN2958_c0_g1	5206	5226	5217	-19.80	-13.70	0.691919191919192	10	2-18,5225-5209	1-1,5226-5226[UP5];19-21,5208-5206[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CGAAAAUAUAGAUGGAGCAGG&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN2958_c0_g1_5217_TPlot.pdf
TRINITY_DN2959_c0_g1:253	si_s38	TRINITY_DN2959_c0_g1	242	262	253	-22.70	-14.78	0.651101321585903	11.5	4-10,259-253;14-21,249-242	1-3,262-260[UP5];11-13,252-250[SIL]	((((((((...(((((((...&...)))))))...))))))))	GAUCCAAUCAGUGAAGAUAGU&UAAAUCUUUAAUAAUUGGAUU	4	0.999991909822843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN2959_c0_g1_253_TPlot.pdf
TRINITY_DN2959_c0_g1:4663	si_a809	TRINITY_DN2959_c0_g1	4652	4672	4663	-34.70	-22.90	0.659942363112392	7	1-5,4672-4668;7-12,4666-4661;14-18,4659-4655	6-6,4667-4667[SIL];13-13,4660-4660[SIL];19-21,4654-4652[UP3]	...(((((.((((((.(((((&))))).)))))).)))))...	UUCCUUCUCCUUCGUCUCGGA&UCCGAAGCGAAGAAGAAGAAA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN2959_c0_g1_4663_TPlot.pdf
TRINITY_DN2959_c0_g1:4664	si_a808	TRINITY_DN2959_c0_g1	4653	4673	4664	-34.90	-22.90	0.656160458452722	7	2-6,4672-4668;8-13,4666-4661;15-19,4659-4655	1-1,4673-4673[UP5];7-7,4667-4667[SIL];14-14,4660-4660[SIL];20-21,4654-4653[UP3]	..(((((.((((((.(((((.&.))))).)))))).)))))..	UCCUUCUCCUUCGUCUCGGAG&AUCCGAAGCGAAGAAGAAGAA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN2959_c0_g1_4664_TPlot.pdf
TRINITY_DN2959_c0_g1:4838	si_a151	TRINITY_DN2959_c0_g1	4827	4847	4838	-28.90	-18.80	0.650519031141869	9	1-8,4847-4840;10-16,4838-4832	9-9,4839-4839[SIL];17-21,4831-4827[UP3]	.....(((((((.((((((((&)))))))).))))))).....	AAGCGGGCCUUAUGACAACAG&UUGUUGUUUUAAGGUCAAUCU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN2959_c0_g1_4838_TPlot.pdf
TRINITY_DN2959_c0_g1:4840	si_a149	TRINITY_DN2959_c0_g1	4829	4849	4840	-29.40	-19.30	0.656462585034014	8.5	1-10,4849-4840;12-18,4838-4832	11-11,4839-4839[SIL];19-21,4831-4829[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	GCGGGCCUUAUGACAACAGUG&CGUUGUUGUUUUAAGGUCAAU	3	0.999999993471148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN2959_c0_g1_4840_TPlot.pdf
TRINITY_DN2959_c0_g1:5659	si_s489	TRINITY_DN2959_c0_g1	5648	5668	5659	-17.90	-11.80	0.659217877094972	6	2-13,5667-5656;15-18,5654-5651	1-1,5668-5668[UP5];14-14,5655-5655[SIL];19-21,5650-5648[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	UUAGUUUUUAUUUAGAUAAAG&AUUUAUUUAAAUAUAAACAAA	4	0.999949203849064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN2959_c0_g1_5659_TPlot.pdf
TRINITY_DN295_c0_g1:145	si_a788	TRINITY_DN295_c0_g1	134	154	145	-24.80	-16.80	0.67741935483871	14	7-21,148-134	1-6,154-149[UP5]	(((((((((((((((......&......)))))))))))))))	UUGGAAAAUGGAGGAUUUGUG&UUCUAUUUUUCUAUUUUCCAA	3	0.999999999908848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN295_c0_g1_145_TPlot.pdf
TRINITY_DN295_c0_g1:40	si_s265	TRINITY_DN295_c0_g1	29	49	40	-26.10	-17.00	0.651340996168582	11	5-18,45-32	1-4,49-46[UP5];19-21,31-29[UP3]	...((((((((((((((....&....))))))))))))))...	UUAUCGAUUUUUUUGGGGGCG&AUUACUCAAAAAAAUCGACAU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s265_TRINITY_DN295_c0_g1_40_TPlot.pdf
TRINITY_DN2960_c0_g1:277	si_a728	TRINITY_DN2960_c0_g1	267	286	277	-40.30	-29.70	0.73697270471464	5.5	1-7,286-280;9-15,278-272;17-21,271-267	8-8,279-279[SIL];16-16,x-x[BULq]	(((((-(((((((.(((((((&))))))).))))))).)))))	GGGGG-AGAGAUGGCUGAGUG&UACUCGGGCAUCUUUACCCCU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN2960_c0_g1_277_TPlot.pdf
TRINITY_DN29617_c0_g1:554	si_a405	TRINITY_DN29617_c0_g1	543	563	554	-19.80	-13.70	0.691919191919192	5.5	2-19,562-545	1-1,563-563[UP5];20-21,544-543[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACAAAUAUGAACAAAGUAAUG&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN29617_c0_g1_554_TPlot.pdf
TRINITY_DN29617_c0_g1:64	si_s899	TRINITY_DN29617_c0_g1	55	73	64	-28.30	-19.60	0.692579505300353	7.5	1-11,73-63;14-19,62-57	12-13,x-x[BULq];20-21,56-55[UP3]	..((((((--(((((((((((&)))))))))))..))))))..	UCUUGAAG--GAGGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN29617_c0_g1_64_TPlot.pdf
TRINITY_DN29617_c0_g1:65	si_s898	TRINITY_DN29617_c0_g1	56	74	65	-30.70	-20.70	0.674267100977199	6	1-12,74-63;15-20,62-57	13-14,x-x[BULq];21-21,56-56[UP3]	.((((((--((((((((((((&))))))))))))..)))))).	CUUGAAG--GAGGAGGAAGCU&GGCUUUCUCUUCAAUUUCAAU	3	0.999998764302083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN29617_c0_g1_65_TPlot.pdf
TRINITY_DN29617_c0_g1:66	si_s897	TRINITY_DN29617_c0_g1	57	75	66	-31.30	-21.20	0.677316293929712	5.5	1-13,75-63;16-21,62-57	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	UUGAAG--GAGGAGGAAGCUU&AGGCUUUCUCUUCAAUUUCAA	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN29617_c0_g1_66_TPlot.pdf
TRINITY_DN29617_c0_g1:707	si_a794	TRINITY_DN29617_c0_g1	696	715	707	-28.60	-20.30	0.70979020979021	6	1-6,715-710;8-18,709-699	7-7,x-x[BULq];19-21,698-696[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	CAUGGAUUGGAAGA-AGAAAA&UUUUCUAUUUUCCAAUCCGAA	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN29617_c0_g1_707_TPlot.pdf
TRINITY_DN29617_c0_g1:708	si_a793	TRINITY_DN29617_c0_g1	697	716	708	-28.50	-20.70	0.726315789473684	5.5	1-7,716-710;9-19,709-699	8-8,x-x[BULq];20-21,698-697[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	AUGGAUUGGAAGA-AGAAAAG&UUUUUCUAUUUUCCAAUCCGA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN29617_c0_g1_708_TPlot.pdf
TRINITY_DN29617_c0_g1:709	si_a792	TRINITY_DN29617_c0_g1	698	717	709	-27.60	-22.00	0.797101449275362	5	1-8,717-710;10-20,709-699	9-9,x-x[BULq];21-21,698-698[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	UGGAUUGGAAGA-AGAAAAGU&AUUUUUCUAUUUUCCAAUCCG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN29617_c0_g1_709_TPlot.pdf
TRINITY_DN29617_c0_g1:710	si_a791	TRINITY_DN29617_c0_g1	699	718	710	-26.50	-21.30	0.80377358490566	5	2-9,717-710;11-21,709-699	1-1,718-718[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	GGAUUGGAAGA-AGAAAAGUU&UAUUUUUCUAUUUUCCAAUCC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN29617_c0_g1_710_TPlot.pdf
TRINITY_DN29617_c0_g1:738	si_a891	TRINITY_DN29617_c0_g1	727	747	738	-22.90	-15.80	0.689956331877729	7	1-15,747-733	16-21,732-727[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUAAAUUAUUGCUAUAUUG&CAAUAUAGUAAUAAUAAGUAA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN29617_c0_g1_738_TPlot.pdf
TRINITY_DN29617_c0_g1:739	si_a890	TRINITY_DN29617_c0_g1	728	748	739	-23.80	-15.80	0.663865546218487	7	2-16,747-733	1-1,748-748[UP5];17-21,732-728[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUAAAUUAUUGCUAUAUUGU&UCAAUAUAGUAAUAAUAAGUA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN29617_c0_g1_739_TPlot.pdf
TRINITY_DN29617_c0_g1:740	si_a889	TRINITY_DN29617_c0_g1	729	749	740	-23.60	-15.80	0.669491525423729	8	3-17,747-733	1-2,749-748[UP5];18-21,732-729[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUAAAUUAUUGCUAUAUUGUU&AUCAAUAUAGUAAUAAUAAGU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN29617_c0_g1_740_TPlot.pdf
TRINITY_DN29617_c0_g1:742	si_a887	TRINITY_DN29617_c0_g1	731	751	742	-22.90	-15.80	0.689956331877729	9.5	5-19,747-733	1-4,751-748[UP5];20-21,732-731[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAUUAUUGCUAUAUUGUUAU&CAAUCAAUAUAGUAAUAAUAA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN29617_c0_g1_742_TPlot.pdf
TRINITY_DN29617_c0_g1:849	si_s759	TRINITY_DN29617_c0_g1	837	858	849	-23.80	-15.70	0.659663865546218	9.5	5-10,854-849;11-21,847-837	1-4,858-855[UP5];x-x,848-848[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	UAAUUAAUUGUCUGUUGUGAGA&UAAAACAACA-ACGAUUAAUUA	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s759_TRINITY_DN29617_c0_g1_849_TPlot.pdf
TRINITY_DN2961_c0_g1:1040	si_s69	TRINITY_DN2961_c0_g1	1028	1052	1040	-23.40	-15.30	0.653846153846154	10.5	1-7,1052-1046;8-19,1042-1031;20-21,1029-1028	x-x,1045-1043[BULt];x-x,1030-1030[BULt]	((.((((((((((((...(((((((&)))))))---))))))))))))-))	GACAGGAAAAGAGAUGCUGGAAGUU&AACUUCU---AUUUUUUUUCUU-UC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN2961_c0_g1_1040_TPlot.pdf
TRINITY_DN2962_c0_g1:2872	si_a318	TRINITY_DN2962_c0_g1	2861	2881	2872	-22.50	-15.30	0.68	8.5	2-4,2880-2878;6-18,2876-2864	1-1,2881-2881[UP5];5-5,2877-2877[SIL];19-21,2863-2861[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	ACUGGAGAAUCAUGGAGAGAA&AUUUAUCCAUGAUUUUUUUAU	2	0.999998748533539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2962_c0_g1_2872_TPlot.pdf
TRINITY_DN29630_c0_g1:1050	si_s374	TRINITY_DN29630_c0_g1	1039	1058	1050	-45.60	-30.20	0.662280701754386	8	1-3,1058-1056;5-8,1055-1052;10-13,1050-1047;15-20,1045-1040	4-4,x-x[BULq];9-9,1051-1051[SIL];14-14,1046-1046[SIL];21-21,1039-1039[UP3]	.((((((.((((.((((-(((&))).)))).)))).)))))).	CGGCGGAGACGUUGGCG-UCG&CGAUCGCUCGCGUGUCCGCCU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN29630_c0_g1_1050_TPlot.pdf
TRINITY_DN29630_c0_g1:1619	si_a371	TRINITY_DN29630_c0_g1	1608	1631	1619	-30.30	-20.42	0.673927392739274	12.5	1-9,1631-1623;12-20,1617-1609	10-11,1622-1618[AILt];21-21,1608-1608[UP3]	.(((((((((.....(((((((((&)))))))))---..))))))))).	CCGAGAUCAUAACGCUUGAUCUGA&UCGGAUCAA---AAAUGAUUUCGA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN29630_c0_g1_1619_TPlot.pdf
TRINITY_DN29630_c0_g1:1623	si_a370	TRINITY_DN29630_c0_g1	1609	1632	1623	-29.50	-20.62	0.698983050847458	11.5	1-10,1632-1623;13-21,1617-1609	11-12,1622-1618[AILt]	(((((((((.....((((((((((&))))))))))---..)))))))))	CGAGAUCAUAACGCUUGAUCUGAU&AUCGGAUCAA---AAAUGAUUUCG	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN29630_c0_g1_1623_TPlot.pdf
TRINITY_DN29630_c0_g1:1625	si_a368	TRINITY_DN29630_c0_g1	1611	1634	1625	-28.70	-20.12	0.701045296167247	9.5	1-12,1634-1623;15-21,1617-1611	13-14,1622-1618[AILt]	(((((((.....((((((((((((&))))))))))))---..)))))))	AGAUCAUAACGCUUGAUCUGAUCA&UGAUCGGAUCAA---AAAUGAUUU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a368_TRINITY_DN29630_c0_g1_1625_TPlot.pdf
TRINITY_DN29630_c0_g1:1626	si_a367	TRINITY_DN29630_c0_g1	1612	1635	1626	-28.80	-20.02	0.695138888888889	6.5	1-13,1635-1623;16-21,1617-1612	14-15,1622-1618[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	GAUCAUAACGCUUGAUCUGAUCAA&UUGAUCGGAUCAA---AAAUGAUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a367_TRINITY_DN29630_c0_g1_1626_TPlot.pdf
TRINITY_DN29634_c0_g1:1000	si_s771	TRINITY_DN29634_c0_g1	989	1009	1000	-25.20	-17.20	0.682539682539683	10.5	1-4,1009-1006;6-19,1004-991	5-5,1005-1005[SIL];20-21,990-989[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AGGUGGUGGUGGUGGUGGAUC&GAUUAAUUACUAUUGCUAUAA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN29634_c0_g1_1000_TPlot.pdf
TRINITY_DN29634_c0_g1:1001	si_s770	TRINITY_DN29634_c0_g1	990	1010	1001	-26.60	-17.60	0.661654135338346	10.5	2-5,1009-1006;7-20,1004-991	1-1,1010-1010[UP5];6-6,1005-1005[SIL];21-21,990-990[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	GGUGGUGGUGGUGGUGGAUCU&CGAUUAAUUACUAUUGCUAUA	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN29634_c0_g1_1001_TPlot.pdf
TRINITY_DN29634_c0_g1:1220	si_s73	TRINITY_DN29634_c0_g1	1209	1229	1220	-24.00	-15.60	0.65	10	1-12,1229-1218;14-19,1216-1211	13-13,1217-1217[SIL];20-21,1210-1209[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	UUAGGAGGCGGAGGAAGUGGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN29634_c0_g1_1220_TPlot.pdf
TRINITY_DN29634_c0_g1:1221	si_s72	TRINITY_DN29634_c0_g1	1210	1230	1221	-24.10	-15.80	0.655601659751037	9.5	2-13,1229-1218;15-20,1216-1211	1-1,1230-1230[UP5];14-14,1217-1217[SIL];21-21,1210-1210[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UAGGAGGCGGAGGAAGUGGAU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN29634_c0_g1_1221_TPlot.pdf
TRINITY_DN29634_c0_g1:1223	si_a550	TRINITY_DN29634_c0_g1	1211	1233	1223	-30.90	-20.10	0.650485436893204	9	1-2,1233-1232;3-14,1230-1219;16-20,1216-1212	x-x,1231-1231[BULt];15-15,1218-1217[AILt];21-21,1211-1211[UP3]	.(((((..((((((((((((.((&))-))))))))))))-.))))).	AGGAGGCGGAGGAAGUGGAUAUG&CA-AUCUAUUUCUUU-AUCUCCC	2	0.995080289302897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN29634_c0_g1_1223_TPlot.pdf
TRINITY_DN29634_c0_g1:1224	si_a549	TRINITY_DN29634_c0_g1	1212	1234	1224	-29.50	-20.20	0.684745762711864	8.5	2-3,1233-1232;4-15,1230-1219;17-21,1216-1212	1-1,1234-1234[UP5];x-x,1231-1231[BULt];16-16,1218-1217[AILt]	(((((..((((((((((((.((.&.))-))))))))))))-.)))))	GGAGGCGGAGGAAGUGGAUAUGG&UCA-AUCUAUUUCUUU-AUCUCC	2	0.921055828159047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN29634_c0_g1_1224_TPlot.pdf
TRINITY_DN29634_c0_g1:1225	si_a548	TRINITY_DN29634_c0_g1	1213	1235	1225	-27.20	-18.50	0.680147058823529	8.5	1-4,1235-1232;5-16,1230-1219;18-21,1216-1213	x-x,1231-1231[BULt];17-17,1218-1217[AILt]	((((..((((((((((((.((((&))))-))))))))))))-.))))	GAGGCGGAGGAAGUGGAUAUGGA&UUCA-AUCUAUUUCUUU-AUCUC	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN29634_c0_g1_1225_TPlot.pdf
TRINITY_DN29634_c0_g1:1229	si_s481	TRINITY_DN29634_c0_g1	1218	1239	1229	-23.00	-15.00	0.652173913043478	11.5	1-4,1239-1236;5-16,1234-1223	x-x,1235-1235[BULt];17-21,1222-1218[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	GGAGGAAGUGGAUAUGGAGGUC&GAUC-CUAUAUUUAUUUAAAUA	3	0.999967176608486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN29634_c0_g1_1229_TPlot.pdf
TRINITY_DN29634_c0_g1:1392	si_s423	TRINITY_DN29634_c0_g1	1381	1402	1392	-21.50	-14.90	0.693023255813954	6	1-9,1402-1394;10-17,1392-1385	x-x,1393-1393[BULt];18-21,1384-1381[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AAUAUAUUGUUAUUAUAGAAUA&UAUUCUAUA-UAACAAUAAUUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN29634_c0_g1_1392_TPlot.pdf
TRINITY_DN29634_c0_g1:1394	si_s422	TRINITY_DN29634_c0_g1	1382	1403	1394	-21.30	-15.90	0.746478873239437	5	1-10,1403-1394;11-18,1392-1385	x-x,1393-1393[BULt];19-21,1384-1382[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	AUAUAUUGUUAUUAUAGAAUAU&AUAUUCUAUA-UAACAAUAAUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN29634_c0_g1_1394_TPlot.pdf
TRINITY_DN29634_c0_g1:1395	si_s421	TRINITY_DN29634_c0_g1	1383	1404	1395	-23.00	-16.00	0.695652173913043	5	2-11,1403-1394;12-19,1392-1385	1-1,1404-1404[UP5];x-x,1393-1393[BULt];20-21,1384-1383[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	UAUAUUGUUAUUAUAGAAUAUU&CAUAUUCUAUA-UAACAAUAAU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN29634_c0_g1_1395_TPlot.pdf
TRINITY_DN29634_c0_g1:1396	si_s420	TRINITY_DN29634_c0_g1	1384	1405	1396	-23.70	-16.00	0.675105485232067	6	3-12,1403-1394;13-20,1392-1385	1-2,1405-1404[UP5];x-x,1393-1393[BULt];21-21,1384-1384[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	AUAUUGUUAUUAUAGAAUAUUA&ACAUAUUCUAUA-UAACAAUAA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s420_TRINITY_DN29634_c0_g1_1396_TPlot.pdf
TRINITY_DN29634_c0_g1:480	si_a784	TRINITY_DN29634_c0_g1	465	489	480	-24.70	-16.90	0.684210526315789	11	2-14,488-476;15-21,471-465	1-1,489-489[UP5];x-x,475-472[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	AAAGUGGCUAUGGAGGUGGAGGAGA&ACUCUUCUAUUUUU----CUAUUUU	3	0.999999999999292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN29634_c0_g1_480_TPlot.pdf
TRINITY_DN29634_c0_g1:481	si_a783	TRINITY_DN29634_c0_g1	466	490	481	-24.70	-16.10	0.651821862348178	13	3-15,488-476;16-21,471-466	1-2,490-489[UP5];x-x,475-472[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	AAGUGGCUAUGGAGGUGGAGGAGAA&AACUCUUCUAUUUUU----CUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN29634_c0_g1_481_TPlot.pdf
TRINITY_DN29634_c0_g1:484	si_s899	TRINITY_DN29634_c0_g1	473	493	484	-28.30	-19.40	0.685512367491166	8.5	1-11,493-483;13-17,481-477	12-12,482-482[SIL];18-21,476-473[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UAUGGAGGUGGAGGAGAAAGU&GCUUUCUCUUCAAUUUCAAUU	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN29634_c0_g1_484_TPlot.pdf
TRINITY_DN29634_c0_g1:492	si_a324	TRINITY_DN29634_c0_g1	482	501	492	-27.50	-18.20	0.661818181818182	8	1-8,501-494;10-13,492-489;15-20,488-483	9-9,493-493[SIL];14-14,x-x[BULq];21-21,482-482[UP3]	.((((((-((((.((((((((&)))))))).)))).)))))).	GGAGGAG-AAAGUGGUCAUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN29634_c0_g1_492_TPlot.pdf
TRINITY_DN29634_c0_g1:494	si_a322	TRINITY_DN29634_c0_g1	484	503	494	-27.00	-18.40	0.681481481481481	7.5	2-10,502-494;12-15,492-489;17-21,488-484	1-1,503-503[UP5];11-11,493-493[SIL];16-16,x-x[BULq]	(((((-((((.(((((((((.&.))))))))).)))).)))))	AGGAG-AAAGUGGUCAUGGAG&AUCCAUGAUUUUUUUAUUCCU	3	0.999895932315747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN29634_c0_g1_494_TPlot.pdf
TRINITY_DN29636_c0_g1:1831	si_a641	TRINITY_DN29636_c0_g1	1820	1840	1831	-23.60	-15.60	0.661016949152542	6.5	3-19,1838-1822	1-2,1840-1839[UP5];20-21,1821-1820[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CAAUGUAUUACUUAAAAAAUA&AUUUUUUUGAGUAAUAUAUCG	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN29636_c0_g1_1831_TPlot.pdf
TRINITY_DN29636_c0_g1:3450	si_s762	TRINITY_DN29636_c0_g1	3441	3459	3450	-26.30	-18.10	0.688212927756654	4.5	1-13,3459-3447;16-19,3446-3443	14-15,x-x[BULq];20-21,3442-3441[UP3]	..((((--(((((((((((((&)))))))))))))..))))..	UUGUGA--AAUCGUUGUUGUU&AACAACAACGAUUAAUUACUA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s762_TRINITY_DN29636_c0_g1_3450_TPlot.pdf
TRINITY_DN29636_c0_g1:3452	si_s760	TRINITY_DN29636_c0_g1	3443	3461	3452	-25.20	-18.80	0.746031746031746	3.5	2-15,3460-3447;18-21,3446-3443	1-1,3461-3461[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	GUGA--AAUCGUUGUUGUUUC&AAAACAACAACGAUUAAUUAC	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s760_TRINITY_DN29636_c0_g1_3452_TPlot.pdf
TRINITY_DN29636_c0_g1:3454	si_s758	TRINITY_DN29636_c0_g1	3443	3463	3454	-23.50	-17.80	0.757446808510638	9	4-17,3460-3447	1-3,3463-3461[UP5];18-21,3446-3443[UP3]	....((((((((((((((...&...))))))))))))))....	GUGAAAUCGUUGUUGUUUCAA&UUAAAACAACAACGAUUAAUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN29636_c0_g1_3454_TPlot.pdf
TRINITY_DN29636_c0_g1:3455	si_s757	TRINITY_DN29636_c0_g1	3444	3464	3455	-25.10	-17.80	0.709163346613546	10	5-18,3460-3447	1-4,3464-3461[UP5];19-21,3446-3444[UP3]	...((((((((((((((....&....))))))))))))))...	UGAAAUCGUUGUUGUUUCAAA&CUUAAAACAACAACGAUUAAU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s757_TRINITY_DN29636_c0_g1_3455_TPlot.pdf
TRINITY_DN2963_c0_g1:1168	si_a144	TRINITY_DN2963_c0_g1	1159	1177	1168	-27.40	-18.00	0.656934306569343	7.5	2-10,1176-1168;13-21,1167-1159	1-1,1177-1177[UP5];11-12,x-x[BULq]	(((((((((--(((((((((.&.)))))))))..)))))))))	CCUUGGAGC--UAACGAUUAU&UUAAUCGUUGUUGUUUUAAGG	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN2963_c0_g1_1168_TPlot.pdf
TRINITY_DN2963_c0_g1:1234	si_a628	TRINITY_DN2963_c0_g1	1223	1247	1234	-27.10	-18.30	0.675276752767528	13	1-6,1247-1242;7-19,1237-1225	x-x,1241-1238[BULt];20-21,1224-1223[UP3]	..(((((((((((((....((((((&))))))----)))))))))))))..	CCAAGAAUUGACAUAAAUCGUAUGC&GCGUAU----UAUGUCGAUUUUUUU	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN2963_c0_g1_1234_TPlot.pdf
TRINITY_DN2963_c0_g1:720	si_a319	TRINITY_DN2963_c0_g1	709	729	720	-22.40	-17.20	0.767857142857143	5.5	2-4,728-726;6-20,724-710	1-1,729-729[UP5];5-5,725-725[SIL];21-21,709-709[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	UAUAGAAAAAUCGUGGUUAAU&UUUAUCCAUGAUUUUUUUAUU	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2963_c0_g1_720_TPlot.pdf
TRINITY_DN2963_c0_g1:721	si_a318	TRINITY_DN2963_c0_g1	710	730	721	-22.50	-17.20	0.764444444444444	6.5	3-5,728-726;7-21,724-710	1-2,730-729[UP5];6-6,725-725[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AUAGAAAAAUCGUGGUUAAUU&AUUUAUCCAUGAUUUUUUUAU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN2963_c0_g1_721_TPlot.pdf
TRINITY_DN2963_c0_g1:821	si_a881	TRINITY_DN2963_c0_g1	810	830	821	-27.80	-19.70	0.70863309352518	6	1-7,830-824;9-12,822-819;14-20,817-811	8-8,823-823[SIL];13-13,818-818[SIL];21-21,810-810[UP3]	.(((((((.((((.(((((((&))))))).)))).))))))).	GUGCUGUAGUGGUAGCAACUA&UAGUUGCAAUCAAUAUAGUAA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN2963_c0_g1_821_TPlot.pdf
TRINITY_DN2963_c0_g1:823	si_a879	TRINITY_DN2963_c0_g1	812	832	823	-27.40	-18.80	0.686131386861314	7	2-9,831-824;11-14,822-819;16-21,817-812	1-1,832-832[UP5];10-10,823-823[SIL];15-15,818-818[SIL]	((((((.((((.((((((((.&.)))))))).)))).))))))	GCUGUAGUGGUAGCAACUAGU&UUUAGUUGCAAUCAAUAUAGU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN2963_c0_g1_823_TPlot.pdf
TRINITY_DN2964_c0_g1:1765	si_s556	TRINITY_DN2964_c0_g1	1754	1777	1765	-28.50	-18.54	0.650526315789474	10.5	1-7,1777-1771;9-19,1766-1756	8-8,1770-1767[AILt];20-21,1755-1754[UP3]	..(((((((((((....(((((((&)))))))---.)))))))))))..	CACCCGAAGAUAUAGAGAAUUCUA&UAGAAUU---AAUAUUUUCGGGAC	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN2964_c0_g1_1765_TPlot.pdf
TRINITY_DN29655_c0_g1:923	si_s67	TRINITY_DN29655_c0_g1	912	935	923	-25.60	-17.94	0.70078125	11.5	1-7,935-929;9-21,924-912	8-8,928-925[AILt]	(((((((((((((....(((((((&)))))))---.)))))))))))))	GAGGAAGAAAAUGAACAGAGUUGC&GCAACUU---CUAUUUUUUUUCUU	4	0.999997234426688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN29655_c0_g1_923_TPlot.pdf
TRINITY_DN29658_c0_g2:147	si_a844	TRINITY_DN29658_c0_g2	135	156	147	-29.20	-19.60	0.671232876712329	6.5	1-11,156-146;13-21,143-135	12-12,145-144[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AUUUUGAGUGAAGCAACUUUUG&UAGAAGUUGCU-AACUUGAAAU	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN29658_c0_g2_147_TPlot.pdf
TRINITY_DN29658_c0_g2:149	si_a842	TRINITY_DN29658_c0_g2	137	158	149	-29.30	-20.20	0.689419795221843	5	1-13,158-146;15-21,143-137	14-14,145-144[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	UUUGAGUGAAGCAACUUUUGUU&AAUAGAAGUUGCU-AACUUGAA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a842_TRINITY_DN29658_c0_g2_149_TPlot.pdf
TRINITY_DN2965_c0_g1:2404	si_s805	TRINITY_DN2965_c0_g1	2393	2413	2404	-28.60	-19.90	0.695804195804196	5.5	2-4,2412-2410;6-15,2408-2399;17-20,2397-2394	1-1,2413-2413[UP5];5-5,2409-2409[SIL];16-16,2398-2398[SIL];21-21,2393-2393[UP3]	.((((.((((((((((.(((.&.))).)))))))))).)))).	UGAGAUGGUAACGAAGUUAAC&UUUAUCUUCGUUACCUUUUCU	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN2965_c0_g1_2404_TPlot.pdf
TRINITY_DN2966_c0_g1:2060	si_a67	TRINITY_DN2966_c0_g1	2049	2085	2060	-27.20	-18.00	0.661764705882353	37	1-6,2085-2080;7-21,2063-2049	x-x,2079-2064[BULt]	(((((((((((((((................((((((&))))))----------------)))))))))))))))	GAGGAGCAGUUUGAGUGACUUGACCGUGGACGGGAGC&GCUUCU----------------UUCAAAUUGUUUUUC	4	0.999999999997959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN2966_c0_g1_2060_TPlot.pdf
TRINITY_DN2966_c0_g1:5508	si_a71	TRINITY_DN2966_c0_g1	5497	5517	5508	-23.30	-15.90	0.682403433476395	9.5	1-6,5517-5512;9-18,5509-5500	7-8,5511-5510[SIL];19-21,5499-5497[UP3]	...((((((((((..((((((&))))))..))))))))))...	GCUUGAAGAACGAAGUGAAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999970199631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN2966_c0_g1_5508_TPlot.pdf
TRINITY_DN2966_c0_g1:6339	si_a415	TRINITY_DN2966_c0_g1	6328	6348	6339	-18.10	-12.60	0.696132596685083	10.5	5-20,6344-6329	1-4,6348-6345[UP5];21-21,6328-6328[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUGUAUUUAUUUAGGUAGUGU&UUUAUAUUUAAAUAAAUAUAG	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN2966_c0_g1_6339_TPlot.pdf
TRINITY_DN2968_c0_g1:1402	si_s314	TRINITY_DN2968_c0_g1	1391	1411	1402	-31.50	-20.60	0.653968253968254	9	4-14,1408-1398;16-18,1396-1394	1-3,1411-1409[UP5];15-15,1397-1397[SIL];19-21,1393-1391[UP3]	...(((.(((((((((((...&...))))))))))).)))...	AAAAACCAGAAGGACAGAUUG&AAUUCUGUCCUUCUUGUUACA	4	0.999999958128544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN2968_c0_g1_1402_TPlot.pdf
TRINITY_DN296_c0_g1:14287	si_a325	TRINITY_DN296_c0_g1	14271	14297	14287	-25.90	-18.30	0.706563706563707	10.5	1-7,14297-14291;8-14,14289-14283;15-21,14277-14271	x-x,14290-14290[BULt];x-x,14282-14278[BULt]	(((((((.....(((((((.(((((((&)))))))-)))))))-----)))))))	ACGAGGAAGCAGAUGAAGACGAUCAUG&CAUGAUU-UUUUUAU-----UCCUUGU	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN296_c0_g1_14287_TPlot.pdf
TRINITY_DN296_c0_g1:14295	si_a318	TRINITY_DN296_c0_g1	14283	14304	14295	-22.50	-15.20	0.675555555555556	11.5	6-14,14299-14291;15-21,14289-14283	1-5,14304-14300[UP5];x-x,14290-14290[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	AUGAAGACGAUCAUGGAGGAUA&AUUUAUCCAUGAUU-UUUUUAU	3	0.999999999946151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN296_c0_g1_14295_TPlot.pdf
TRINITY_DN296_c0_g1:14790	si_s91	TRINITY_DN296_c0_g1	14777	14799	14790	-34.70	-23.40	0.674351585014409	8.5	2-7,14798-14793;10-18,14790-14782;19-21,14779-14777	1-1,14799-14799[UP5];8-9,14792-14791[SIL];x-x,14781-14780[BULt]	(((..(((((((((..((((((.&.))))))..)))))))))--)))	UCCGGGAGGCGAAGUCGAAGAGU&UUUCUUCUUCUUCGCUUC--GGA	3	0.999999999990747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN296_c0_g1_14790_TPlot.pdf
TRINITY_DN296_c0_g1:14939	si_a63	TRINITY_DN296_c0_g1	14925	14948	14939	-30.20	-20.90	0.69205298013245	12	1-10,14948-14939;11-14,14935-14932;17-21,14929-14925	x-x,14938-14936[BULt];15-16,14931-14930[SIL]	(((((..((((...((((((((((&))))))))))---))))..)))))	GACGAGGUGAGGCUAGGAGCGGGU&ACUCGCUUCU---UUCAAAUUGUU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN296_c0_g1_14939_TPlot.pdf
TRINITY_DN296_c0_g1:15219	si_a585	TRINITY_DN296_c0_g1	15209	15228	15219	-31.60	-21.50	0.680379746835443	7.5	1-10,15228-15219;13-19,15217-15211	11-12,15218-15218[AILq];20-21,15210-15209[UP3]	..(((((((.-((((((((((&))))))))))..)))))))..	UCUCUGUCUC-CUUGUUGCAA&UUGUAACAAGAAGGACAGAAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN296_c0_g1_15219_TPlot.pdf
TRINITY_DN296_c0_g1:17409	si_s82	TRINITY_DN296_c0_g1	17396	17419	17409	-28.90	-18.90	0.653979238754325	14	3-6,17417-17414;8-11,17411-17408;12-21,17405-17396	1-2,17419-17418[UP5];7-7,17413-17412[AILt];x-x,17407-17406[BULt]	((((((((((..((((..((((..&..))))-.))))--))))))))))	GAGGAGAAGAAUGAGGCUGAGAUG&UUUCUU-UCCUU--UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN296_c0_g1_17409_TPlot.pdf
TRINITY_DN296_c0_g1:17472	si_s92	TRINITY_DN296_c0_g1	17461	17481	17472	-34.90	-23.10	0.66189111747851	8	1-16,17481-17466	17-21,17465-17461[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGGACAAGCGGAGGAGAAGGA&UUCUUCUUCUUCGCUUCGGAU	2	0.999999984341296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN296_c0_g1_17472_TPlot.pdf
TRINITY_DN296_c0_g1:17473	si_s91	TRINITY_DN296_c0_g1	17462	17482	17473	-34.70	-24.00	0.69164265129683	7	1-17,17482-17466	18-21,17465-17462[UP3]	....(((((((((((((((((&)))))))))))))))))....	GGACAAGCGGAGGAGAAGGAA&UUUCUUCUUCUUCGCUUCGGA	2	0.999968173008182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN296_c0_g1_17473_TPlot.pdf
TRINITY_DN296_c0_g1:17474	si_s90	TRINITY_DN296_c0_g1	17463	17483	17474	-35.30	-26.90	0.762039660056657	5.5	1-18,17483-17466	19-21,17465-17463[UP3]	...((((((((((((((((((&))))))))))))))))))...	GACAAGCGGAGGAGAAGGAAG&CUUUCUUCUUCUUCGCUUCGG	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN296_c0_g1_17474_TPlot.pdf
TRINITY_DN296_c0_g1:17475	si_s89	TRINITY_DN296_c0_g1	17464	17484	17475	-35.30	-27.30	0.773371104815864	5.5	2-19,17483-17466	1-1,17484-17484[UP5];20-21,17465-17464[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACAAGCGGAGGAGAAGGAAGA&CCUUUCUUCUUCUUCGCUUCG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN296_c0_g1_17475_TPlot.pdf
TRINITY_DN296_c0_g1:17476	si_s88	TRINITY_DN296_c0_g1	17465	17485	17476	-34.80	-27.30	0.78448275862069	6.5	3-20,17483-17466	1-2,17485-17484[UP5];21-21,17465-17465[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAAGCGGAGGAGAAGGAAGAG&UCCUUUCUUCUUCUUCGCUUC	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN296_c0_g1_17476_TPlot.pdf
TRINITY_DN296_c0_g1:17477	si_s87	TRINITY_DN296_c0_g1	17466	17486	17477	-32.90	-27.30	0.829787234042553	7	4-21,17483-17466	1-3,17486-17484[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAGCGGAGGAGAAGGAAGAGC&UUCCUUUCUUCUUCUUCGCUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN296_c0_g1_17477_TPlot.pdf
TRINITY_DN296_c0_g1:17479	si_s85	TRINITY_DN296_c0_g1	17468	17497	17479	-33.80	-26.60	0.78698224852071	21	1-6,17497-17492;7-21,17482-17468	x-x,17491-17483[BULt]	(((((((((((((((.........((((((&))))))---------)))))))))))))))	GCGGAGGAGAAGGAAGAGCUUUCCGGAGAG&CUUUCC---------UUUCUUCUUCUUCGC	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN296_c0_g1_17479_TPlot.pdf
TRINITY_DN296_c0_g1:17481	si_s83	TRINITY_DN296_c0_g1	17470	17499	17481	-30.90	-21.20	0.686084142394822	23	2-8,17498-17492;9-21,17482-17470	1-1,17499-17499[UP5];x-x,17491-17483[BULt]	(((((((((((((.........(((((((.&.)))))))---------)))))))))))))	GGAGGAGAAGGAAGAGCUUUCCGGAGAGGC&UUCUUUCC---------UUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN296_c0_g1_17481_TPlot.pdf
TRINITY_DN296_c0_g1:17498	si_s80	TRINITY_DN296_c0_g1	17480	17508	17498	-28.20	-18.70	0.663120567375887	13	1-9,17508-17500;10-16,17498-17492;17-21,17484-17480	x-x,17499-17499[BULt];x-x,17491-17485[BULt]	(((((.......(((((((.(((((((((&)))))))))-)))))))-------)))))	GAAGAGCUUUCCGGAGAGGCGGAGAAGAA&UUUUUCUUU-CCUUUCU-------UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN296_c0_g1_17498_TPlot.pdf
TRINITY_DN296_c0_g1:17499	si_s95	TRINITY_DN296_c0_g1	17485	17508	17499	-36.30	-24.50	0.674931129476584	8	1-14,17508-17495;15-17,17491-17489;20-20,17486-17486	x-x,17494-17492[BULt];18-19,17488-17487[SIL];21-21,17485-17485[UP3]	.(..(((...((((((((((((((&))))))))))))))---)))..).	GCUUUCCGGAGAGGCGGAGAAGAA&UUCUUCUUCGCUUC---GGAUUGG	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN296_c0_g1_17499_TPlot.pdf
TRINITY_DN296_c0_g1:17500	si_s94	TRINITY_DN296_c0_g1	17486	17509	17500	-35.50	-27.10	0.763380281690141	6.5	1-15,17509-17495;16-18,17491-17489;21-21,17486-17486	x-x,17494-17492[BULt];19-20,17488-17487[SIL]	(..(((...(((((((((((((((&)))))))))))))))---)))..)	CUUUCCGGAGAGGCGGAGAAGAAG&CUUCUUCUUCGCUUC---GGAUUG	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN296_c0_g1_17500_TPlot.pdf
TRINITY_DN296_c0_g1:17502	si_s92	TRINITY_DN296_c0_g1	17488	17511	17502	-34.90	-28.40	0.813753581661891	6	1-17,17511-17495;18-20,17491-17489	x-x,17494-17492[BULt];21-21,17488-17488[UP3]	.(((...(((((((((((((((((&)))))))))))))))))---))).	UUCCGGAGAGGCGGAGAAGAAGAG&UUCUUCUUCUUCGCUUC---GGAU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN296_c0_g1_17502_TPlot.pdf
TRINITY_DN296_c0_g1:17503	si_s91	TRINITY_DN296_c0_g1	17489	17512	17503	-34.70	-28.30	0.815561959654179	6.5	2-18,17511-17495;19-21,17491-17489	1-1,17512-17512[UP5];x-x,17494-17492[BULt]	(((...(((((((((((((((((.&.)))))))))))))))))---)))	UCCGGAGAGGCGGAGAAGAAGAGU&UUUCUUCUUCUUCGCUUC---GGA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN296_c0_g1_17503_TPlot.pdf
TRINITY_DN296_c0_g1:17504	si_s90	TRINITY_DN296_c0_g1	17493	17515	17504	-35.30	-27.30	0.773371104815864	8	1-3,17515-17513;4-19,17510-17495	x-x,17512-17511[BULt];20-21,17494-17493[UP3]	..((((((((((((((((..(((&)))--))))))))))))))))..	GAGAGGCGGAGAAGAAGAGUGAG&CUU--UCUUCUUCUUCGCUUCGG	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN296_c0_g1_17504_TPlot.pdf
TRINITY_DN296_c0_g1:17507	si_s87	TRINITY_DN296_c0_g1	17496	17518	17507	-32.90	-27.20	0.826747720364742	8	2-6,17517-17513;7-21,17510-17496	1-1,17518-17518[UP5];x-x,17512-17511[BULt]	(((((((((((((((..(((((.&.)))))--)))))))))))))))	AGGCGGAGAAGAAGAGUGAGGGU&UUCCUU--UCUUCUUCUUCGCUU	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN296_c0_g1_17507_TPlot.pdf
TRINITY_DN296_c0_g1:17509	si_s70	TRINITY_DN296_c0_g1	17497	17517	17509	-25.80	-16.80	0.651162790697674	8.5	2-5,17516-17513;7-19,17512-17500;20-21,17498-17497	1-1,17517-17517[UP5];6-6,x-x[BULq];x-x,17499-17499[BULt]	((.(((((((((((((-((((.&.)))).)))))))))))))-))	GGCGGAGAAGAAGAGU-GAGGG&ACUUCUAUUUUUUUUCUUU-CC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN296_c0_g1_17509_TPlot.pdf
TRINITY_DN296_c0_g1:7509	si_a502	TRINITY_DN296_c0_g1	7498	7519	7509	-32.10	-21.20	0.660436137071651	8.5	1-8,7519-7512;9-13,7510-7506;15-19,7504-7500	x-x,7511-7511[BULt];14-14,7505-7505[SIL];20-21,7499-7498[UP3]	..(((((.(((((.((((((((&))))))))-))))).)))))..	ACUCCAGCGAGGAUCGAAGAGC&GUUUUUCG-UCUUCCUUGGAAU	3	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN296_c0_g1_7509_TPlot.pdf
TRINITY_DN296_c0_g1:7970	si_a680	TRINITY_DN296_c0_g1	7959	7979	7970	-34.70	-22.80	0.657060518731988	9.5	2-7,7978-7973;9-18,7971-7962	1-1,7979-7979[UP5];8-8,7972-7972[SIL];19-21,7961-7959[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	CCCCGAAGCCGCGAGGGUGAU&CUUAUUCACGCGGUUUCGAAC	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a680_TRINITY_DN296_c0_g1_7970_TPlot.pdf
TRINITY_DN2972_c0_g1:2018	si_a143	TRINITY_DN2972_c0_g1	2006	2027	2018	-25.10	-16.90	0.673306772908366	5	2-19,2026-2009;20-21,2007-2006	1-1,2027-2027[UP5];x-x,2008-2008[BULt]	((.((((((((((((((((((.&.))))))))))))))))))-))	CUGUAAAAUGACAAUGGUUAAA&AUUAAUCGUUGUUGUUUUA-AG	2	0.998016861159279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN2972_c0_g1_2018_TPlot.pdf
TRINITY_DN2972_c0_g1:2019	si_a142	TRINITY_DN2972_c0_g1	2008	2028	2019	-23.50	-16.90	0.719148936170213	7	3-20,2026-2009	1-2,2028-2027[UP5];21-21,2008-2008[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUAAAAUGACAAUGGUUAAAC&AAUUAAUCGUUGUUGUUUUAA	0	0.19113717814167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN2972_c0_g1_2019_TPlot.pdf
TRINITY_DN2972_c0_g1:2020	si_a141	TRINITY_DN2972_c0_g1	2009	2029	2020	-23.80	-16.70	0.701680672268908	8	4-21,2026-2009	1-3,2029-2027[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAAAAUGACAAUGGUUAAACC&UAAUUAAUCGUUGUUGUUUUA	4	0.999962730131049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN2972_c0_g1_2020_TPlot.pdf
TRINITY_DN2973_c0_g1:1977	si_s484	TRINITY_DN2973_c0_g1	1966	1986	1977	-20.50	-13.36	0.651707317073171	11.5	1-9,1986-1978;14-20,1973-1967	10-13,1977-1974[SIL];21-21,1966-1966[UP3]	.(((((((....(((((((((&)))))))))....))))))).	GUGUAUUUUAAGGAAUGUGGG&CCUAUAUUUAUUUAAAUAUAA	2	0.999094643521448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN2973_c0_g1_1977_TPlot.pdf
TRINITY_DN2974_c0_g1:579	si_s81	TRINITY_DN2974_c0_g1	568	588	579	-28.90	-19.30	0.667820069204152	10.5	4-8,585-581;10-20,579-569	1-3,588-586[UP5];9-9,580-580[SIL];21-21,568-568[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	UGAGGAAGAAAGUGAGGACGG&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN2974_c0_g1_579_TPlot.pdf
TRINITY_DN2975_c0_g3:496	si_a457	TRINITY_DN2975_c0_g3	485	505	496	-23.50	-15.90	0.676595744680851	5.5	2-18,504-488;20-21,486-485	1-1,505-505[UP5];19-19,487-487[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GCCUGUUGUAUAUAAUAAUAU&UUGUUGUUAUAUAUAAUAUGU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN2975_c0_g3_496_TPlot.pdf
TRINITY_DN2975_c0_g3:653	si_s486	TRINITY_DN2975_c0_g3	642	662	653	-18.10	-12.70	0.701657458563536	8.5	1-16,662-647	17-21,646-642[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAAUUGUUUAAAUGAGUGUA&UAUAUUUAUUUAAAUAUAAAC	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN2975_c0_g3_653_TPlot.pdf
TRINITY_DN2975_c0_g3:654	si_s485	TRINITY_DN2975_c0_g3	643	663	654	-18.10	-12.90	0.712707182320442	8.5	2-17,662-647	1-1,663-663[UP5];18-21,646-643[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAAUUGUUUAAAUGAGUGUAU&CUAUAUUUAUUUAAAUAUAAA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN2975_c0_g3_654_TPlot.pdf
TRINITY_DN2975_c0_g3:655	si_s484	TRINITY_DN2975_c0_g3	644	665	655	-20.50	-14.90	0.726829268292683	8.5	1-2,665-664;3-18,662-647	x-x,663-663[BULt];19-21,646-644[UP3]	...((((((((((((((((.((&))-))))))))))))))))...	AAUUGUUUAAAUGAGUGUAUGG&CC-UAUAUUUAUUUAAAUAUAA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN2975_c0_g3_655_TPlot.pdf
TRINITY_DN2975_c0_g3:656	si_s483	TRINITY_DN2975_c0_g3	645	666	656	-21.40	-14.90	0.696261682242991	8.5	2-3,665-664;4-19,662-647	1-1,666-666[UP5];x-x,663-663[BULt];20-21,646-645[UP3]	..((((((((((((((((.((.&.))-))))))))))))))))..	AUUGUUUAAAUGAGUGUAUGGU&UCC-UAUAUUUAUUUAAAUAUA	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN2975_c0_g3_656_TPlot.pdf
TRINITY_DN2975_c0_g3:670	si_s434	TRINITY_DN2975_c0_g3	659	680	670	-21.50	-14.10	0.655813953488372	8.5	2-3,679-678;4-8,676-672;11-21,669-659	1-1,680-680[UP5];x-x,677-677[BULt];9-10,671-670[SIL]	(((((((((((..(((((.((.&.))-)))))..)))))))))))	UGUAUGGUAUGGUAUUAUAUGG&ACA-AUAAUUACAUAUUAUAUA	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN2975_c0_g3_670_TPlot.pdf
TRINITY_DN2975_c1_g1:2430	si_s897	TRINITY_DN2975_c1_g1	2419	2439	2430	-31.30	-22.00	0.702875399361022	7.5	3-8,2437-2432;10-21,2430-2419	1-2,2439-2438[UP5];9-9,2431-2431[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UUGAAGUUGAAGUGAAGGUAG&AGGCUUUCUCUUCAAUUUCAA	2	0.966553182246443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN2975_c1_g1_2430_TPlot.pdf
TRINITY_DN2976_c0_g1:364	si_s512	TRINITY_DN2976_c0_g1	352	373	364	-24.80	-17.40	0.701612903225806	8	1-11,373-363;12-19,361-354	x-x,362-362[BULt];20-21,353-352[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AAGAAUUGGGUGAUGUAGAGUU&AAUUCUAUAUU-CUUAAUUCGA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN2976_c0_g1_364_TPlot.pdf
TRINITY_DN2976_c0_g1:366	si_s510	TRINITY_DN2976_c0_g1	354	375	366	-24.80	-17.10	0.689516129032258	7.5	3-13,373-363;14-21,361-354	1-2,375-374[UP5];x-x,362-362[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GAAUUGGGUGAUGUAGAGUUCA&ACAAUUCUAUAUU-CUUAAUUC	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN2976_c0_g1_366_TPlot.pdf
TRINITY_DN2976_c0_g1:378	si_s868	TRINITY_DN2976_c0_g1	368	387	378	-35.90	-24.30	0.676880222841226	6	1-10,387-378;12-13,376-375;15-19,374-370	11-11,377-377[SIL];14-14,x-x[BULq];20-21,369-368[UP3]	..(((((-((.((((((((((&)))))))))).)).)))))..	AGAGUUC-AAUGCCGGUAGGU&ACCUACCGGUCUUAGAACUAA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN2976_c0_g1_378_TPlot.pdf
TRINITY_DN2976_c0_g1:700	si_a21	TRINITY_DN2976_c0_g1	689	708	700	-24.30	-15.80	0.650205761316872	8	1-4,708-705;6-7,703-702;9-20,701-690	5-5,704-704[SIL];8-8,x-x[BULq];21-21,689-689[UP3]	.((((((((((((-((.((((&)))).)).)))))))))))).	AUAGGGCUAAAAG-AAUUGGG&CCUAUUUAUUUUUAGUUCUAA	4	0.999999996555155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN2976_c0_g1_700_TPlot.pdf
TRINITY_DN2976_c0_g1:710	si_s513	TRINITY_DN2976_c0_g1	698	719	710	-24.90	-16.50	0.662650602409639	8.5	1-13,719-707;14-18,705-701	x-x,706-706[BULt];19-21,700-698[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	AAAGAAUUGGGGGAUGUAGAGU&AUUCUAUAUUCUU-AAUUCGAA	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN2976_c0_g1_710_TPlot.pdf
TRINITY_DN2976_c0_g1:711	si_s512	TRINITY_DN2976_c0_g1	699	720	711	-24.80	-17.40	0.701612903225806	7	1-14,720-707;15-19,705-701	x-x,706-706[BULt];20-21,700-699[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AAGAAUUGGGGGAUGUAGAGUU&AAUUCUAUAUUCUU-AAUUCGA	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN2976_c0_g1_711_TPlot.pdf
TRINITY_DN2976_c0_g1:713	si_s510	TRINITY_DN2976_c0_g1	701	722	713	-24.80	-17.10	0.689516129032258	7.5	3-16,720-707;17-21,705-701	1-2,722-721[UP5];x-x,706-706[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GAAUUGGGGGAUGUAGAGUUCA&ACAAUUCUAUAUUCUU-AAUUC	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN2976_c0_g1_713_TPlot.pdf
TRINITY_DN2978_c0_g1:518	si_s158	TRINITY_DN2978_c0_g1	507	527	518	-44.90	-30.00	0.66815144766147	11.5	1-5,527-523;8-8,520-520;10-10,518-518;13-21,515-507	6-7,522-521[SIL];9-9,519-519[SIL];11-12,517-516[SIL]	(((((((((..(.(..(((((&)))))..).)..)))))))))	UGCCCCUGGAAGCGUUCCUCC&GGAGGUUCAUGGCCAGGGGUA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN2978_c0_g1_518_TPlot.pdf
TRINITY_DN2978_c0_g1:554	si_s716	TRINITY_DN2978_c0_g1	543	565	554	-31.70	-21.00	0.662460567823344	7.5	1-8,565-558;9-14,555-550;16-20,548-544	x-x,557-556[BULt];15-15,549-549[SIL];21-21,543-543[UP3]	.(((((.((((((..((((((((&))))))))--)))))).))))).	UGGUGGAAUCUUUCACCCUGUUC&GAACAGGG--AAAGAUAUUAUCU	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s716_TRINITY_DN2978_c0_g1_554_TPlot.pdf
TRINITY_DN2978_c0_g1:555	si_s715	TRINITY_DN2978_c0_g1	544	566	555	-31.70	-20.80	0.65615141955836	7.5	2-9,565-558;10-15,555-550;17-21,548-544	1-1,566-566[UP5];x-x,557-556[BULt];16-16,549-549[SIL]	(((((.((((((..((((((((.&.))))))))--)))))).)))))	GGUGGAAUCUUUCACCCUGUUCU&UGAACAGGG--AAAGAUAUUAUC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s715_TRINITY_DN2978_c0_g1_555_TPlot.pdf
TRINITY_DN2978_c0_g2:1732	si_a399	TRINITY_DN2978_c0_g2	1722	1741	1732	-22.60	-17.00	0.752212389380531	6.5	2-14,1740-1728;16-20,1727-1723	1-1,1741-1741[UP5];15-15,x-x[BULq];21-21,1722-1722[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	UUGAGC-AGACAAUUCUGUGC&AUAUAGAAUUGUUUUGUUUAU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN2978_c0_g2_1732_TPlot.pdf
TRINITY_DN2978_c0_g2:1733	si_a398	TRINITY_DN2978_c0_g2	1723	1742	1733	-22.40	-16.90	0.754464285714286	7.5	3-15,1740-1728;17-21,1727-1723	1-2,1742-1741[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	UGAGC-AGACAAUUCUGUGCG&AAUAUAGAAUUGUUUUGUUUA	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN2978_c0_g2_1733_TPlot.pdf
TRINITY_DN2978_c0_g2:1734	si_a397	TRINITY_DN2978_c0_g2	1724	1746	1734	-24.00	-16.10	0.670833333333333	10.5	1-3,1746-1744;4-16,1740-1728;18-21,1727-1724	x-x,1743-1741[BULt];17-17,x-x[BULq]	((((-(((((((((((((...(((&)))---))))))))))))).))))	GAGC-AGACAAUUCUGUGCGCUUC&GAA---UAUAGAAUUGUUUUGUUU	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN2978_c0_g2_1734_TPlot.pdf
TRINITY_DN2978_c11_g2:202	si_s716	TRINITY_DN2978_c11_g2	191	213	202	-31.70	-21.40	0.675078864353312	7	1-8,213-206;9-14,203-198;16-20,196-192	x-x,205-204[BULt];15-15,197-197[SIL];21-21,191-191[UP3]	.(((((.((((((..((((((((&))))))))--)))))).))))).	UGGUAGAAUCUUUCACCCUGUUC&GAACAGGG--AAAGAUAUUAUCU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s716_TRINITY_DN2978_c11_g2_202_TPlot.pdf
TRINITY_DN29790_c0_g2:175	si_s536	TRINITY_DN29790_c0_g2	164	184	175	-27.70	-18.70	0.675090252707581	11	1-2,184-183;4-7,181-178;9-16,176-169	3-3,182-182[SIL];8-8,177-177[SIL];17-21,168-164[UP3]	.....((((((((.((((.((&)).)))).)))))))).....	UAUUAGAUCGGAUGGAGAUUG&CAUUUUUGAUCCGAUCAAAAU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN29790_c0_g2_175_TPlot.pdf
TRINITY_DN2979_c0_g1:2960	si_a394	TRINITY_DN2979_c0_g1	2950	2969	2960	-24.30	-16.70	0.687242798353909	3.5	1-12,2969-2958;14-21,2957-2950	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	UAAGACGA-UCUAUAUUUUUA&UAAGAAUAUAGAAUUGUUUUG	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN2979_c0_g1_2960_TPlot.pdf
TRINITY_DN29801_c0_g1:138	si_a566	TRINITY_DN29801_c0_g1	127	147	138	-36.40	-26.00	0.714285714285714	6	1-14,147-134;16-21,132-127	15-15,133-133[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	GGAUGUCCGAUUUAUGGGGGG&CUCCCCGUGAAUCGUAUGUUU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN29801_c0_g1_138_TPlot.pdf
TRINITY_DN29801_c0_g1:139	si_a565	TRINITY_DN29801_c0_g1	128	148	139	-37.40	-25.70	0.687165775401069	6	1-15,148-134;17-21,132-128	16-16,133-133[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GAUGUCCGAUUUAUGGGGGGG&UCUCCCCGUGAAUCGUAUGUU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN29801_c0_g1_139_TPlot.pdf
TRINITY_DN29801_c0_g1:140	si_a564	TRINITY_DN29801_c0_g1	129	149	140	-37.60	-25.70	0.683510638297872	6	1-16,149-134;18-21,132-129	17-17,133-133[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	AUGUCCGAUUUAUGGGGGGGU&AUCUCCCCGUGAAUCGUAUGU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN29801_c0_g1_140_TPlot.pdf
TRINITY_DN29801_c0_g1:141	si_a563	TRINITY_DN29801_c0_g1	130	150	141	-37.20	-25.20	0.67741935483871	9	2-17,149-134	1-1,150-150[UP5];18-21,133-130[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGUCCGAUUUAUGGGGGGGUU&UAUCUCCCCGUGAAUCGUAUG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a563_TRINITY_DN29801_c0_g1_141_TPlot.pdf
TRINITY_DN29801_c0_g1:142	si_a562	TRINITY_DN29801_c0_g1	131	151	142	-35.60	-25.20	0.707865168539326	9.5	3-18,149-134	1-2,151-150[UP5];19-21,133-131[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUCCGAUUUAUGGGGGGGUUG&UUAUCUCCCCGUGAAUCGUAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a562_TRINITY_DN29801_c0_g1_142_TPlot.pdf
TRINITY_DN29801_c0_g1:143	si_a561	TRINITY_DN29801_c0_g1	132	152	143	-35.40	-25.20	0.711864406779661	10.5	4-19,149-134	1-3,152-150[UP5];20-21,133-132[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCCGAUUUAUGGGGGGGUUGG&UUUAUCUCCCCGUGAAUCGUA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN29801_c0_g1_143_TPlot.pdf
TRINITY_DN2980_c0_g1:1851	si_a464	TRINITY_DN2980_c0_g1	1840	1860	1851	-19.60	-14.80	0.755102040816326	7	1-15,1860-1846	16-21,1845-1840[UP3]	......(((((((((((((((&)))))))))))))))......	UAUUUAUACAUGUUAUAUAUA&UAUAUAUAAUAUGUAAUUAUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN2980_c0_g1_1851_TPlot.pdf
TRINITY_DN2980_c0_g1:1852	si_a463	TRINITY_DN2980_c0_g1	1841	1861	1852	-19.70	-15.00	0.761421319796954	7	2-16,1860-1846	1-1,1861-1861[UP5];17-21,1845-1841[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUUUAUACAUGUUAUAUAUAU&UUAUAUAUAAUAUGUAAUUAU	0	0.0363450463411901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN2980_c0_g1_1852_TPlot.pdf
TRINITY_DN2980_c0_g1:1853	si_a462	TRINITY_DN2980_c0_g1	1842	1862	1853	-21.20	-15.00	0.707547169811321	8	3-17,1860-1846	1-2,1862-1861[UP5];18-21,1845-1842[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUAUACAUGUUAUAUAUAUU&GUUAUAUAUAAUAUGUAAUUA	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN2980_c0_g1_1853_TPlot.pdf
TRINITY_DN2980_c0_g1:1854	si_a461	TRINITY_DN2980_c0_g1	1843	1863	1854	-21.50	-15.00	0.697674418604651	8.5	4-18,1860-1846	1-3,1863-1861[UP5];19-21,1845-1843[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUAUACAUGUUAUAUAUAUUU&UGUUAUAUAUAAUAUGUAAUU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN2980_c0_g1_1854_TPlot.pdf
TRINITY_DN2981_c1_g1:601	si_s88	TRINITY_DN2981_c1_g1	590	610	601	-34.80	-23.60	0.67816091954023	5	2-15,609-596;17-18,594-593	1-1,610-610[UP5];16-16,595-595[SIL];19-21,592-590[UP3]	...((.((((((((((((((.&.)))))))))))))).))...	AUCGCUAAGAAGAAGAAAGGU&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999998901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN2981_c1_g1_601_TPlot.pdf
TRINITY_DN29831_c1_g2:2906	si_a406	TRINITY_DN29831_c1_g2	2895	2915	2906	-19.80	-13.20	0.666666666666667	9	3-9,2913-2907;11-21,2905-2895	1-2,2915-2914[UP5];10-10,2906-2906[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	UUUAAAUAUGAUCAGGAUAUU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN29831_c1_g2_2906_TPlot.pdf
TRINITY_DN2985_c0_g1:195	si_a771	TRINITY_DN2985_c0_g1	184	204	195	-29.40	-24.00	0.816326530612245	6.5	1-12,204-193;15-21,190-184	13-14,192-191[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GGAGGAGGAGGAUCAGUCAGG&UUUGAUUGAUUCAACUCUUCU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN2985_c0_g1_195_TPlot.pdf
TRINITY_DN2986_c0_g1:772	si_a319	TRINITY_DN2986_c0_g1	761	782	772	-22.40	-14.60	0.651785714285714	12.5	5-7,778-776;8-20,774-762	1-4,782-779[UP5];x-x,775-775[BULt];21-21,761-761[UP3]	.(((((((((((((.(((....&....)))-))))))))))))).	UGUAAAGAGAUCGUAGGACAAC&UUUAUCC-AUGAUUUUUUUAUU	2	0.999999999980888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN2986_c0_g1_772_TPlot.pdf
TRINITY_DN29877_c0_g1:2587	si_a71	TRINITY_DN29877_c0_g1	2576	2595	2587	-23.30	-15.90	0.682403433476395	7	1-7,2595-2589;10-19,2587-2578	8-9,2588-2588[AILq];20-21,2577-2576[UP3]	..((((((((((.-(((((((&)))))))..))))))))))..	AUGUGGAAAACAC-UUGAAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999992294527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN29877_c0_g1_2587_TPlot.pdf
TRINITY_DN2987_c0_g1:278	si_s630	TRINITY_DN2987_c0_g1	268	287	278	-35.60	-23.60	0.662921348314607	6.5	1-13,287-275;15-16,274-273;19-21,270-268	14-14,x-x[BULq];17-18,272-271[SIL]	(((..((-(((((((((((((&))))))))))))).))..)))	GCAUUUG-CUGCGAGGAGAUC&GAUCUUUUCGUAGGCGUUUGC	4	0.999903674439181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN2987_c0_g1_278_TPlot.pdf
TRINITY_DN29883_c0_g1:127	si_s864	TRINITY_DN29883_c0_g1	116	141	127	-37.80	-24.80	0.656084656084656	14	3-8,139-134;9-18,128-119;20-21,117-116	1-2,141-140[UP5];x-x,133-129[BULt];19-19,118-118[SIL]	((.((((((((((.....((((((..&..))))))-----)))))))))).))	UUGUAAGACCGGUUUUGGAGGUCUUU&CUAGACCU-----ACCGGUCUUAGAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s864_TRINITY_DN29883_c0_g1_127_TPlot.pdf
TRINITY_DN2989_c0_g1:1117	si_a30	TRINITY_DN2989_c0_g1	1108	1126	1117	-32.70	-21.80	0.666666666666667	12	3-10,1124-1117;13-21,1116-1108	1-2,1126-1125[UP5];11-12,x-x[BULq]	(((((((((--((((((((..&..))))))))..)))))))))	UUGCCGGUC--GGAGCUGGCG&UUUUAGUUCUAAGACCGGUAG	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a30_TRINITY_DN2989_c0_g1_1117_TPlot.pdf
TRINITY_DN2989_c0_g1:1118	si_a29	TRINITY_DN2989_c0_g1	1109	1127	1118	-31.00	-21.30	0.687096774193548	12.5	4-11,1124-1117;14-21,1116-1109	1-3,1127-1125[UP5];12-13,x-x[BULq]	((((((((--((((((((...&...))))))))..))))))))	UGCCGGUC--GGAGCUGGCGG&UUUUUAGUUCUAAGACCGGUA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN2989_c0_g1_1118_TPlot.pdf
TRINITY_DN2989_c0_g1:3228	si_a143	TRINITY_DN2989_c0_g1	3218	3237	3228	-25.10	-16.50	0.657370517928287	13	6-12,3232-3226;14-21,3225-3218	1-5,3237-3233[UP5];13-13,x-x[BULq]	((((((((-(((((((.....&.....))))))).))))))))	CUUGAAGC-GCAGCGACACAC&AUUAAUCGUUGUUGUUUUAAG	2	0.999964840884371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN2989_c0_g1_3228_TPlot.pdf
TRINITY_DN2989_c0_g1:3304	si_a20	TRINITY_DN2989_c0_g1	3292	3313	3304	-26.70	-19.30	0.722846441947566	9	1-4,3313-3310;6-12,3308-3302;13-20,3300-3293	5-5,3309-3309[SIL];x-x,3301-3301[BULt];21-21,3292-3292[UP3]	.((((((((.(((((((.((((&)))).)))))))-)))))))).	GAGAGCUGAGGGAUAAGCAGGC&GCCUAUUUAUUU-UUAGUUCUA	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN2989_c0_g1_3304_TPlot.pdf
TRINITY_DN2989_c0_g1:3326	si_a312	TRINITY_DN2989_c0_g1	3316	3334	3326	-31.20	-21.90	0.701923076923077	8.5	1-6,3334-3329;8-11,3328-3325;13-20,3324-3317	7-7,x-x[BULq];12-12,x-x[BULq];21-21,3316-3316[UP3]	.((((((((-((((-((((((&)))))).)))).)))))))).	CAGUCAUGG-UGAG-CCGAGC&GCUUGGAUUUAUCCAUGAUUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN2989_c0_g1_3326_TPlot.pdf
TRINITY_DN2989_c0_g1:3329	si_a309	TRINITY_DN2989_c0_g1	3319	3337	3329	-33.60	-22.60	0.672619047619048	7.5	2-9,3336-3329;11-14,3328-3325;16-21,3324-3319	1-1,3337-3337[UP5];10-10,x-x[BULq];15-15,x-x[BULq]	((((((-((((-((((((((.&.)))))))).)))).))))))	UCAUGG-UGAG-CCGAGCGGC&UUCGCUUGGAUUUAUCCAUGA	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN2989_c0_g1_3329_TPlot.pdf
TRINITY_DN2989_c0_g1:3508	si_a548	TRINITY_DN2989_c0_g1	3494	3517	3508	-27.20	-18.40	0.676470588235294	11.5	2-10,3516-3508;11-19,3504-3496;21-21,3494-3494	1-1,3517-3517[UP5];x-x,3507-3505[BULt];20-20,3495-3495[SIL]	(.(((((((((...(((((((((.&.)))))))))---))))))))).)	GUGAUGAAGAGACUGUGGAUUGAU&UUCAAUCUAU---UUCUUUAUCUC	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN2989_c0_g1_3508_TPlot.pdf
TRINITY_DN298_c0_g1:1077	si_s888	TRINITY_DN298_c0_g1	1066	1086	1077	-26.80	-17.70	0.66044776119403	18.5	9-19,1078-1068	1-8,1086-1079[UP5];20-21,1067-1066[UP3]	..(((((((((((........&........)))))))))))..	CCGAGAAGGCCUGGAAAACGC&AAAAUAAAUAGGCUUUCUCUU	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN298_c0_g1_1077_TPlot.pdf
TRINITY_DN298_c0_g1:1078	si_s887	TRINITY_DN298_c0_g1	1067	1087	1078	-26.80	-17.70	0.66044776119403	19.5	10-20,1078-1068	1-9,1087-1079[UP5];21-21,1067-1067[UP3]	.(((((((((((.........&.........))))))))))).	CGAGAAGGCCUGGAAAACGCU&AAAAAUAAAUAGGCUUUCUCU	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN298_c0_g1_1078_TPlot.pdf
TRINITY_DN298_c0_g1:1123	si_a140	TRINITY_DN298_c0_g1	1113	1133	1123	-25.20	-16.70	0.662698412698413	8	1-6,1133-1128;8-12,1125-1121;14-21,1120-1113	7-7,1127-1126[AILt];13-13,x-x[BULq]	((((((((-(((((..((((((&))))))-.))))).))))))))	AAGGCAAC-ACGAUCCGAUUGC&GUAAUU-AAUCGUUGUUGUUUU	3	0.999999903584718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN298_c0_g1_1123_TPlot.pdf
TRINITY_DN298_c0_g1:1327	si_a326	TRINITY_DN298_c0_g1	1316	1336	1327	-26.20	-17.80	0.679389312977099	12.5	5-20,1332-1317	1-4,1336-1333[UP5];21-21,1316-1316[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGCAAGGAAUGGAAGGAACUU&AUGAUUUUUUUAUUCCUUGUC	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN298_c0_g1_1327_TPlot.pdf
TRINITY_DN298_c0_g1:1328	si_a325	TRINITY_DN298_c0_g1	1317	1337	1328	-25.90	-18.10	0.698841698841699	8.5	1-2,1337-1336;4-4,1334-1334;6-21,1332-1317	3-3,1335-1335[SIL];5-5,1333-1333[SIL]	((((((((((((((((.(.((&)).).))))))))))))))))	GCAAGGAAUGGAAGGAACUUG&CAUGAUUUUUUUAUUCCUUGU	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN298_c0_g1_1328_TPlot.pdf
TRINITY_DN298_c0_g1:1534	si_a77	TRINITY_DN298_c0_g1	1523	1543	1534	-22.20	-14.50	0.653153153153153	8.5	2-13,1542-1531;15-20,1529-1524	1-1,1543-1543[UP5];14-14,1530-1530[SIL];21-21,1523-1523[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CCUUGGUCGUGGAAGAUGAUA&AAUUGUUUUUCAUUAUUAAGA	2	0.999998041111167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN298_c0_g1_1534_TPlot.pdf
TRINITY_DN298_c0_g1:1930	si_s552	TRINITY_DN298_c0_g1	1919	1939	1930	-21.10	-14.00	0.663507109004739	6	2-11,1938-1929;13-20,1927-1920	1-1,1939-1939[UP5];12-12,1928-1928[SIL];21-21,1919-1919[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UGAAAAUAUAGAUUUUAUUUA&AAAAUAGAAUUAAUAUUUUCG	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN298_c0_g1_1930_TPlot.pdf
TRINITY_DN298_c0_g1:364	si_a636	TRINITY_DN298_c0_g1	352	373	364	-26.30	-17.20	0.653992395437262	6	1-17,373-357;18-20,355-353	x-x,356-356[BULt];21-21,352-352[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	GGUUCAUUUGGGAAAAUCGACA&UGUCGAUUUUUUUGAGU-AAUA	4	0.999999999987704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN298_c0_g1_364_TPlot.pdf
TRINITY_DN298_c0_g1:959	si_a559	TRINITY_DN298_c0_g1	946	968	959	-36.80	-24.28	0.659782608695652	9	1-6,968-963;9-17,960-952;20-21,947-946	7-8,962-961[SIL];18-19,951-948[AILt]	((....(((((((((..((((((&))))))..)))))))))--..))	CGUCAGUCACGGGGAAUUGAAGA&UCUUUAUCUCCCCGUGA--AUCG	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN298_c0_g1_959_TPlot.pdf
TRINITY_DN298_c0_g1:960	si_a558	TRINITY_DN298_c0_g1	949	969	960	-35.40	-24.00	0.677966101694915	9	2-7,968-963;10-18,960-952	1-1,969-969[UP5];8-9,962-961[SIL];19-21,951-949[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	CAGUCACGGGGAAUUGAAGAC&UUCUUUAUCUCCCCGUGAAUC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN298_c0_g1_960_TPlot.pdf
TRINITY_DN298_c0_g1:961	si_a557	TRINITY_DN298_c0_g1	950	970	961	-33.40	-24.00	0.718562874251497	10	3-8,968-963;11-19,960-952	1-2,970-969[UP5];9-10,962-961[SIL];20-21,951-950[UP3]	..(((((((((..((((((..&..))))))..)))))))))..	AGUCACGGGGAAUUGAAGACU&UUUCUUUAUCUCCCCGUGAAU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN298_c0_g1_961_TPlot.pdf
TRINITY_DN298_c0_g1:962	si_a556	TRINITY_DN298_c0_g1	951	971	962	-33.40	-24.00	0.718562874251497	11	4-9,968-963;12-20,960-952	1-3,971-969[UP5];10-11,962-961[SIL];21-21,951-951[UP3]	.(((((((((..((((((...&...))))))..))))))))).	GUCACGGGGAAUUGAAGACUU&AUUUCUUUAUCUCCCCGUGAA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN298_c0_g1_962_TPlot.pdf
TRINITY_DN298_c0_g1:963	si_a555	TRINITY_DN298_c0_g1	952	972	963	-33.70	-23.80	0.706231454005935	12	5-10,968-963;13-21,960-952	1-4,972-969[UP5];11-12,962-961[SIL]	(((((((((..((((((....&....))))))..)))))))))	UCACGGGGAAUUGAAGACUUA&UAUUUCUUUAUCUCCCCGUGA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN298_c0_g1_963_TPlot.pdf
TRINITY_DN2990_c0_g1:1688	si_s79	TRINITY_DN2990_c0_g1	1677	1697	1688	-26.20	-17.50	0.66793893129771	10.5	5-12,1693-1686;14-19,1684-1679	1-4,1697-1694[UP5];13-13,1685-1685[SIL];20-21,1678-1677[UP3]	..((((((.((((((((....&....)))))))).))))))..	UUGAAGAGUGGAAAGAACGUC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN2990_c0_g1_1688_TPlot.pdf
TRINITY_DN2990_c0_g1:1690	si_s77	TRINITY_DN2990_c0_g1	1679	1699	1690	-25.50	-17.10	0.670588235294118	12.5	7-14,1693-1686;16-21,1684-1679	1-6,1699-1694[UP5];15-15,1685-1685[SIL]	((((((.((((((((......&......)))))))).))))))	GAAGAGUGGAAAGAACGUCGA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN2990_c0_g1_1690_TPlot.pdf
TRINITY_DN2990_c0_g1:2952	si_s71	TRINITY_DN2990_c0_g1	2931	2961	2952	-25.70	-19.10	0.743190661478599	23.5	1-12,2961-2950;13-21,2939-2931	x-x,2949-2940[BULt]	(((((((((..........((((((((((((&))))))))))))----------)))))))))	GGGAGAGGAACUGUCGAAAAAGAAGUAGAAG&CUUCUAUUUUUU----------UUCUUUCCU	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN2990_c0_g1_2952_TPlot.pdf
TRINITY_DN2990_c0_g1:2953	si_s70	TRINITY_DN2990_c0_g1	2932	2962	2953	-25.80	-18.00	0.697674418604651	14	2-13,2961-2950;14-21,2939-2932	1-1,2962-2962[UP5];x-x,2949-2940[BULt]	((((((((..........((((((((((((.&.))))))))))))----------))))))))	GGAGAGGAACUGUCGAAAAAGAAGUAGAAGA&ACUUCUAUUUUUU----------UUCUUUCC	3	0.999999999999168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN2990_c0_g1_2953_TPlot.pdf
TRINITY_DN29914_c0_g1:2151	si_s526	TRINITY_DN29914_c0_g1	2140	2159	2151	-25.60	-17.70	0.69140625	6.5	2-8,2158-2152;10-11,2151-2150;13-21,2148-2140	1-1,2159-2159[UP5];9-9,x-x[BULq];12-12,2149-2149[SIL]	(((((((((.((-(((((((.&.))))))).)).)))))))))	GAUCAAAAGCGA-UUCGGAUG&AAUUCGAAAUCAUUUUUGAUC	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN29914_c0_g1_2151_TPlot.pdf
TRINITY_DN29914_c0_g1:25	si_s80	TRINITY_DN29914_c0_g1	12	34	25	-28.20	-21.20	0.75177304964539	5.5	1-10,34-25;11-17,23-17;18-21,15-12	x-x,24-24[BULt];x-x,16-16[BULt]	((((.(((((((.((((((((((&))))))))))-)))))))-))))	GGAGUAAGAAGGAGAAGGAAAAA&UUUUUCUUUC-CUUUCUU-CUUC	4	0.999999998459931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN29914_c0_g1_25_TPlot.pdf
TRINITY_DN29914_c0_g1:31	si_s74	TRINITY_DN29914_c0_g1	19	40	31	-25.00	-18.80	0.752	5	1-2,40-39;4-16,37-25;17-21,23-19	3-3,38-38[SIL];x-x,24-24[BULt]	(((((.(((((((((((((.((&)).)))))))))))))-)))))	GAAGGAGAAGGAAAAAGAAAAG&CUAUUUUUUUUCUUUC-CUUUC	2	0.999514091019493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN29914_c0_g1_31_TPlot.pdf
TRINITY_DN29914_c0_g1:35	si_s70	TRINITY_DN29914_c0_g1	24	44	35	-25.80	-17.90	0.693798449612403	6.5	2-6,43-39;8-20,37-25	1-1,44-44[UP5];7-7,38-38[SIL];21-21,24-24[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAAGGAAAAAGAAAAGGAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.99999999276185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN29914_c0_g1_35_TPlot.pdf
TRINITY_DN2993_c0_g1:486	si_s8	TRINITY_DN2993_c0_g1	475	494	486	-21.30	-17.80	0.835680751173709	4.5	1-6,494-489;8-21,488-475	7-7,x-x[BULq]	((((((((((((((-((((((&)))))).))))))))))))))	AAUAUAGUGGUAAU-AGUGAU&AUUACUUAUUAUUACUAUAUU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN2993_c0_g1_486_TPlot.pdf
TRINITY_DN2993_c0_g1:531	si_s64	TRINITY_DN2993_c0_g1	521	541	531	-24.10	-16.50	0.684647302904564	5.5	1-5,541-537;6-12,535-529;14-21,528-521	x-x,536-536[BULt];13-13,x-x[BULq]	((((((((-(((((((.(((((&)))))-))))))).))))))))	AGAAGAGA-AGAAGUUGGCUGA&UUAGC-AACUUCUAUUUUUUUU	4	0.999999915525935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN2993_c0_g1_531_TPlot.pdf
TRINITY_DN2993_c0_g1:532	si_s63	TRINITY_DN2993_c0_g1	521	542	532	-25.80	-17.50	0.678294573643411	6	1-6,542-537;7-13,535-529;15-21,527-521	x-x,536-536[BULt];14-14,528-528[SIL]	(((((((.(((((((.((((((&))))))-))))))).)))))))	AGAAGAGAAGAAGUUGGCUGAU&GUUAGC-AACUUCUAUUUUUUU	2	0.998733041046006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN2993_c0_g1_532_TPlot.pdf
TRINITY_DN29962_c0_g1:185	si_a470	TRINITY_DN29962_c0_g1	174	195	185	-21.30	-15.50	0.727699530516432	9	1-7,195-189;10-20,185-175	8-9,188-186[AILt];21-21,174-174[UP3]	.(((((((((((...(((((((&)))))))-..))))))))))).	GGUGACAGUAAUGGUCAUAUUG&UAAUAUG-UAAUUAUUGUUAUA	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN29962_c0_g1_185_TPlot.pdf
TRINITY_DN2996_c0_g1:5295	si_a322	TRINITY_DN2996_c0_g1	5284	5304	5295	-27.00	-18.50	0.685185185185185	8.5	3-11,5302-5294;14-21,5291-5284	1-2,5304-5303[UP5];12-13,5293-5292[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	AGGGGUAGCUGAAUCAUGGCC&AUCCAUGAUUUUUUUAUUCCU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN2996_c0_g1_5295_TPlot.pdf
TRINITY_DN2996_c0_g1:5298	si_a746	TRINITY_DN2996_c0_g1	5281	5307	5298	-41.30	-29.20	0.707021791767555	16	1-11,5307-5297;12-14,5289-5287;16-20,5286-5282	x-x,5296-5290[BULt];15-15,x-x[BULq];21-21,5281-5281[UP3]	.(((((-(((.......(((((((((((&)))))))))))-------))).))))).	AAAAGG-GGUAGCUGAAUCAUGGCCAGG&CCUGGCCAUGA-------ACCUCCUUUG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN2996_c0_g1_5298_TPlot.pdf
TRINITY_DN2996_c0_g1:5299	si_a745	TRINITY_DN2996_c0_g1	5282	5308	5299	-42.00	-29.20	0.695238095238095	16	2-12,5307-5297;13-15,5289-5287;17-21,5286-5282	1-1,5308-5308[UP5];x-x,5296-5290[BULt];16-16,x-x[BULq]	(((((-(((.......(((((((((((.&.)))))))))))-------))).)))))	AAAGG-GGUAGCUGAAUCAUGGCCAGGA&CCCUGGCCAUGA-------ACCUCCUUU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN2996_c0_g1_5299_TPlot.pdf
TRINITY_DN2996_c0_g1:5429	si_s316	TRINITY_DN2996_c0_g1	5418	5438	5429	-31.50	-21.20	0.673015873015873	10.5	2-3,5437-5436;6-18,5433-5421	1-1,5438-5438[UP5];4-5,5435-5434[SIL];19-21,5420-5418[UP3]	...(((((((((((((..((.&.))..)))))))))))))...	CUCGUGGCGAGAGGGAGUGAU&UUCUGUCCUUCUUGUUACAAA	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN2996_c0_g1_5429_TPlot.pdf
TRINITY_DN2996_c0_g1:5671	si_s100	TRINITY_DN2996_c0_g1	5660	5680	5671	-33.70	-23.40	0.694362017804154	9	3-13,5678-5668;15-17,5666-5664	1-2,5680-5679[UP5];14-14,5667-5667[SIL];18-21,5663-5660[UP3]	....(((.(((((((((((..&..))))))))))).)))....	CUCGUCCCAUCCGAGGCGACA&CUUCGCUUCGGAUUGGAAAAU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN2996_c0_g1_5671_TPlot.pdf
TRINITY_DN2997_c0_g1:1146	si_s309	TRINITY_DN2997_c0_g1	1134	1151	1146	-33.80	-22.20	0.656804733727811	10	1-4,1151-1148;9-11,1147-1145;12-21,1143-1134	5-8,x-x[BULq];x-x,1144-1144[BULt]	((((((((((.(((----((((&))))....)))-))))))))))	CAAGAAGGACAAGA----UCGC&GCGAAAAUUCU-GUCCUUCUUG	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN2997_c0_g1_1146_TPlot.pdf
TRINITY_DN2997_c0_g1:1557	si_a471	TRINITY_DN2997_c0_g1	1546	1566	1557	-21.10	-14.10	0.66824644549763	8	2-7,1565-1560;10-19,1557-1548	1-1,1566-1566[UP5];8-9,1559-1558[SIL];20-21,1547-1546[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	UGAUAACAAUAACAACAUGUA&AAUAUGUAAUUAUUGUUAUAU	2	0.999866830620927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN2997_c0_g1_1557_TPlot.pdf
TRINITY_DN2997_c0_g1:1558	si_a470	TRINITY_DN2997_c0_g1	1547	1567	1558	-21.30	-14.10	0.661971830985915	9	3-8,1565-1560;11-20,1557-1548	1-2,1567-1566[UP5];9-10,1559-1558[SIL];21-21,1547-1547[UP3]	.((((((((((..((((((..&..))))))..)))))))))).	GAUAACAAUAACAACAUGUAA&UAAUAUGUAAUUAUUGUUAUA	2	0.99961161751332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN2997_c0_g1_1558_TPlot.pdf
TRINITY_DN2997_c0_g1:1603	si_s292	TRINITY_DN2997_c0_g1	1593	1612	1603	-36.60	-23.80	0.650273224043716	7	2-13,1611-1600;16-19,1598-1595	1-1,1612-1612[UP5];14-15,1599-1599[AILq];20-21,1594-1593[UP3]	..((((.-((((((((((((.&.))))))))))))..))))..	CGGCAAC-CCAAUCGGCUGGA&CCUAGUCGAUUGGAAUUGCGA	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN2997_c0_g1_1603_TPlot.pdf
TRINITY_DN2998_c0_g1:954	si_a784	TRINITY_DN2998_c0_g1	943	963	954	-24.70	-16.20	0.65587044534413	7	1-13,963-951;16-20,948-944	14-15,950-949[SIL];21-21,943-943[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	CGAAUGAUAGGAUAGAAGGGU&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN2998_c0_g1_954_TPlot.pdf
TRINITY_DN29_c0_g1:1819	si_s552	TRINITY_DN29_c0_g1	1804	1828	1819	-21.10	-14.30	0.677725118483412	11.5	2-10,1827-1819;11-21,1814-1804	1-1,1828-1828[UP5];x-x,1818-1815[BULt]	(((((((((((....(((((((((.&.)))))))))----)))))))))))	CGAAAAUGUUAAAUUAUUUUGUUUG&AAAAUAGAAU----UAAUAUUUUCG	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN29_c0_g1_1819_TPlot.pdf
TRINITY_DN29_c0_g1:887	si_a788	TRINITY_DN29_c0_g1	876	896	887	-24.80	-16.40	0.661290322580645	9	2-6,895-891;8-18,889-879	1-1,896-896[UP5];7-7,890-890[SIL];19-21,878-876[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	AUAGAAAAUGGAGAUGUAGAU&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN29_c0_g1_887_TPlot.pdf
TRINITY_DN29_c0_g2:239	si_a412	TRINITY_DN29_c0_g2	228	249	239	-18.30	-12.60	0.688524590163934	7	1-4,249-246;6-19,243-230	5-5,245-244[AILt];20-21,229-228[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	UCUUUAUUUAAAUGUAUCACAA&UUGU-UUAUAUUUAAAUAAAUA	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN29_c0_g2_239_TPlot.pdf
TRINITY_DN29_c0_g2:240	si_a411	TRINITY_DN29_c0_g2	229	250	240	-17.90	-12.80	0.715083798882682	7	2-5,249-246;7-20,243-230	1-1,250-250[UP5];6-6,245-244[AILt];21-21,229-229[UP3]	.((((((((((((((..((((.&.))))-.)))))))))))))).	CUUUAUUUAAAUGUAUCACAAG&UUUGU-UUAUAUUUAAAUAAAU	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN29_c0_g2_240_TPlot.pdf
TRINITY_DN29_c0_g2:241	si_a410	TRINITY_DN29_c0_g2	230	251	241	-17.80	-14.20	0.797752808988764	6	1-6,251-246;8-21,243-230	7-7,245-244[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	UUUAUUUAAAUGUAUCACAAGA&UUUUGU-UUAUAUUUAAAUAAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN29_c0_g2_241_TPlot.pdf
TRINITY_DN29_c0_g2:242	si_a409	TRINITY_DN29_c0_g2	231	252	242	-19.50	-14.90	0.764102564102564	6.5	1-7,252-246;9-21,243-231	8-8,245-244[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	UUAUUUAAAUGUAUCACAAGAU&GUUUUGU-UUAUAUUUAAAUAA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN29_c0_g2_242_TPlot.pdf
TRINITY_DN29_c0_g2:243	si_a408	TRINITY_DN29_c0_g2	232	253	243	-20.10	-14.80	0.736318407960199	7	1-8,253-246;10-21,243-232	9-9,245-244[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	UAUUUAAAUGUAUCACAAGAUA&UGUUUUGU-UUAUAUUUAAAUA	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN29_c0_g2_243_TPlot.pdf
TRINITY_DN29_c0_g2:244	si_a407	TRINITY_DN29_c0_g2	233	254	244	-19.80	-13.50	0.681818181818182	7.5	2-9,253-246;11-21,243-233	1-1,254-254[UP5];10-10,245-244[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	AUUUAAAUGUAUCACAAGAUAU&UUGUUUUGU-UUAUAUUUAAAU	3	0.999999999999732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN29_c0_g2_244_TPlot.pdf
TRINITY_DN29_c0_g2:340	si_s817	TRINITY_DN29_c0_g2	329	349	340	-24.50	-16.30	0.66530612244898	8	2-12,348-338;14-17,336-333	1-1,349-349[UP5];13-13,337-337[SIL];18-21,332-329[UP3]	....((((.(((((((((((.&.))))))))))).))))....	AAGACAUUUUUAGGAAAGGGG&ACCUUUUCUUAAUAAUGAAAA	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN29_c0_g2_340_TPlot.pdf
TRINITY_DN29_c0_g2:341	si_s816	TRINITY_DN29_c0_g2	330	350	341	-24.90	-16.30	0.654618473895582	9	3-13,348-338;15-18,336-333	1-2,350-349[UP5];14-14,337-337[SIL];19-21,332-330[UP3]	...((((.(((((((((((..&..))))))))))).))))...	AGACAUUUUUAGGAAAGGGGU&UACCUUUUCUUAAUAAUGAAA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN29_c0_g2_341_TPlot.pdf
TRINITY_DN29_c0_g2:863	si_s495	TRINITY_DN29_c0_g2	852	871	863	-19.80	-13.30	0.671717171717172	6	1-7,871-865;11-21,862-852	8-10,864-863[AILq]	(((((((((((..-(((((((&)))))))...)))))))))))	AAUUGUUUUGUAU-UAUUUAA&UUAAAUAUAAACAAAACAAUU	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN29_c0_g2_863_TPlot.pdf
TRINITY_DN2_c0_g2:1408	si_a487	TRINITY_DN2_c0_g2	1397	1417	1408	-24.80	-16.28	0.656451612903226	10.5	1-7,1417-1411;11-18,1407-1400	8-10,1410-1408[SIL];19-21,1399-1397[UP3]	...((((((((...(((((((&)))))))...))))))))...	UUUAGCGACAUUUGCUGUAUA&UAUAUAGAAUAUGUCGUUUUU	3	0.999916707456954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN2_c0_g2_1408_TPlot.pdf
TRINITY_DN2_c0_g2:1409	si_a486	TRINITY_DN2_c0_g2	1398	1418	1409	-24.90	-16.98	0.681927710843374	9.5	1-8,1418-1411;12-19,1407-1400	9-11,1410-1408[SIL];20-21,1399-1398[UP3]	..((((((((...((((((((&))))))))...))))))))..	UUAGCGACAUUUGCUGUAUAA&UUAUAUAGAAUAUGUCGUUUU	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN2_c0_g2_1409_TPlot.pdf
TRINITY_DN2_c0_g2:585	si_s408	TRINITY_DN2_c0_g2	574	594	585	-30.20	-21.10	0.698675496688742	7.5	3-17,592-578	1-2,594-593[UP5];18-21,577-574[UP3]	....(((((((((((((((..&..)))))))))))))))....	UACCUGUGUCGUUUUUCGUAA&AGACGAAAAACGACAUAUUCU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s408_TRINITY_DN2_c0_g2_585_TPlot.pdf
TRINITY_DN2_c0_g2:587	si_s406	TRINITY_DN2_c0_g2	576	596	587	-29.50	-21.10	0.715254237288136	9.5	5-19,592-578	1-4,596-593[UP5];20-21,577-576[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCUGUGUCGUUUUUCGUAACU&GAAGACGAAAAACGACAUAUU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s406_TRINITY_DN2_c0_g2_587_TPlot.pdf
TRINITY_DN30002_c1_g1:91	si_s699	TRINITY_DN30002_c1_g1	80	99	91	-28.60	-19.30	0.674825174825175	9.5	1-8,99-92;11-17,90-84;19-21,82-80	9-10,91-91[AILq];18-18,83-83[SIL]	(((.(((((((.-((((((((&))))))))..))))))).)))	GUUGGCUGGUGU-UCGGCUGA&UUAGUCGAUUUAUUAGUGAAC	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN30002_c1_g1_91_TPlot.pdf
TRINITY_DN3000_c0_g1:658	si_s607	TRINITY_DN3000_c0_g1	646	668	658	-27.60	-19.30	0.699275362318841	6.5	1-6,668-663;7-13,661-655;15-19,652-648	x-x,662-662[BULt];14-14,654-653[AILt];20-21,647-646[UP3]	..(((((..(((((((.((((((&))))))-)))))))-.)))))..	GAGGAUUCGGAAAAAGAAUUCGC&GCGAAU-CUUUUUU-AAAUCCAA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN3000_c0_g1_658_TPlot.pdf
TRINITY_DN3000_c0_g1:660	si_s605	TRINITY_DN3000_c0_g1	648	670	660	-27.50	-20.40	0.741818181818182	5.5	2-8,669-663;9-15,661-655;17-21,652-648	1-1,670-670[UP5];x-x,662-662[BULt];16-16,654-653[AILt]	(((((..(((((((.(((((((.&.)))))))-)))))))-.)))))	GGAUUCGGAAAAAGAAUUCGCUA&AAGCGAAU-CUUUUUU-AAAUCC	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN3000_c0_g1_660_TPlot.pdf
TRINITY_DN3001_c0_g1:148	si_s808	TRINITY_DN3001_c0_g1	137	157	148	-28.60	-19.00	0.664335664335664	8	1-11,157-147;13-19,145-139	12-12,146-146[SIL];20-21,138-137[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CGAAGAGGAAGUGAUGAGGAU&AUCUUCGUUACCUUUUCUUAA	4	0.999999999972496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3001_c0_g1_148_TPlot.pdf
TRINITY_DN3002_c0_g1:1145	si_s440	TRINITY_DN3002_c0_g1	1134	1154	1145	-21.60	-14.06	0.650925925925926	8	1-6,1154-1149;11-21,1144-1134	7-10,1148-1145[SIL]	(((((((((((....((((((&))))))....)))))))))))	UUGUUAUAUAUUUACUGUAAU&AUUACAUAUUAUAUAUAACAA	4	0.999871397437328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN3002_c0_g1_1145_TPlot.pdf
TRINITY_DN3003_c1_g1:2576	si_s8	TRINITY_DN3003_c1_g1	2565	2586	2576	-21.30	-14.80	0.694835680751174	12	5-8,2582-2579;9-21,2577-2565	1-4,2586-2583[UP5];x-x,2578-2578[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	GAUAUGGUAGUAGUUAAGGAAA&AUUACUUA-UUAUUACUAUAUU	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN3003_c1_g1_2576_TPlot.pdf
TRINITY_DN3004_c0_g1:2333	si_a394	TRINITY_DN3004_c0_g1	2322	2342	2333	-24.30	-16.80	0.691358024691358	8.5	4-18,2339-2325;20-21,2323-2322	1-3,2342-2340[UP5];19-19,2324-2324[SIL]	((.(((((((((((((((...&...))))))))))))))).))	CACAACAGUUCUAUGUUUGUU&UAAGAAUAUAGAAUUGUUUUG	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN3004_c0_g1_2333_TPlot.pdf
TRINITY_DN3004_c0_g1:2334	si_a393	TRINITY_DN3004_c0_g1	2323	2343	2334	-22.70	-15.60	0.687224669603524	11.5	5-19,2339-2325	1-4,2343-2340[UP5];20-21,2324-2323[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAACAGUUCUAUGUUUGUUU&UUAAGAAUAUAGAAUUGUUUU	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN3004_c0_g1_2334_TPlot.pdf
TRINITY_DN3004_c0_g1:2425	si_a337	TRINITY_DN3004_c0_g1	2414	2435	2425	-30.80	-20.30	0.659090909090909	12	3-5,2433-2431;6-15,2429-2420	1-2,2435-2434[UP5];x-x,2430-2430[BULt];16-21,2419-2414[UP3]	......((((((((((.(((..&..)))-))))))))))......	GUUUACUUCGGGACAGUGGAUG&AUUCC-UUGUCCCGAAAAUAUU	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN3004_c0_g1_2425_TPlot.pdf
TRINITY_DN3004_c0_g1:2436	si_a331	TRINITY_DN3004_c0_g1	2420	2445	2436	-30.60	-23.30	0.761437908496732	15	2-11,2444-2435;12-21,2429-2420	1-1,2445-2445[UP5];x-x,2434-2430[BULt]	((((((((((.....((((((((((.&.))))))))))-----))))))))))	UUCGGGACAGUGGAUGGAAUGGAAGU&UUUUUUAUUCC-----UUGUCCCGAA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN3004_c0_g1_2436_TPlot.pdf
TRINITY_DN3004_c0_g1:3224	si_a871	TRINITY_DN3004_c0_g1	3213	3233	3224	-26.40	-17.50	0.662878787878788	14.5	6-17,3228-3217	1-5,3233-3229[UP5];18-21,3216-3213[UP3]	....((((((((((((.....&.....))))))))))))....	AGUAGCAGCUAGAUCUGGUUA&AUUAAAGAUUUAGUUGCAAUC	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN3004_c0_g1_3224_TPlot.pdf
TRINITY_DN3004_c0_g1:3226	si_a869	TRINITY_DN3004_c0_g1	3215	3235	3226	-24.80	-17.50	0.705645161290323	16.5	8-19,3228-3217	1-7,3235-3229[UP5];20-21,3216-3215[UP3]	..((((((((((((.......&.......))))))))))))..	UAGCAGCUAGAUCUGGUUAUC&UUAUUAAAGAUUUAGUUGCAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN3004_c0_g1_3226_TPlot.pdf
TRINITY_DN3005_c0_g1:766	si_s633	TRINITY_DN3005_c0_g1	755	775	766	-37.90	-28.20	0.744063324538259	8.5	1-12,775-764;14-14,762-762;16-20,760-756	13-13,763-763[SIL];15-15,761-761[SIL];21-21,755-755[UP3]	.(((((.(.((((((((((((&)))))))))))).).))))).	UGGGCAUGGGCUUGCGAGGGG&CUUUUCGUAGGCGUUUGCCCU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN3005_c0_g1_766_TPlot.pdf
TRINITY_DN3005_c0_g1:767	si_s632	TRINITY_DN3005_c0_g1	756	776	767	-38.20	-29.40	0.769633507853403	7.5	1-13,776-764;15-15,762-762;17-21,760-756	14-14,763-763[SIL];16-16,761-761[SIL]	(((((.(.(((((((((((((&))))))))))))).).)))))	GGGCAUGGGCUUGCGAGGGGA&UCUUUUCGUAGGCGUUUGCCC	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN3005_c0_g1_767_TPlot.pdf
TRINITY_DN3005_c0_g1:835	si_s78	TRINITY_DN3005_c0_g1	820	844	835	-26.20	-18.20	0.694656488549618	9	1-10,844-835;11-18,833-826;19-21,822-820	x-x,834-834[BULt];x-x,825-823[BULt]	(((...((((((((.((((((((((&))))))))))-))))))))---)))	GGAUGCAGAGAGGAGGAGGAAGAAA&UUUUUUUCUU-UCCUUUCU---UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3005_c0_g1_835_TPlot.pdf
TRINITY_DN3005_c0_g1:858	si_s667	TRINITY_DN3005_c0_g1	844	867	858	-28.90	-19.00	0.657439446366782	8	2-14,866-854;15-18,850-847	1-1,867-867[UP5];x-x,853-851[BULt];19-21,846-844[UP3]	...((((...(((((((((((((.&.)))))))))))))---))))...	ACACUGUCCGAGUCAAUUCGAUCG&GGAUCGAAUUGAUU---AUAGAAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN3005_c0_g1_858_TPlot.pdf
TRINITY_DN3005_c0_g1:860	si_s665	TRINITY_DN3005_c0_g1	846	870	860	-33.60	-21.90	0.651785714285714	8	1-3,870-868;4-16,866-854;17-20,850-847	x-x,867-867[BULt];x-x,853-851[BULt];21-21,846-846[UP3]	.((((...(((((((((((((.(((&)))-)))))))))))))---)))).	ACUGUCCGAGUCAAUUCGAUCGUCC&GGG-GAUCGAAUUGAUU---AUAGA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN3005_c0_g1_860_TPlot.pdf
TRINITY_DN3005_c0_g1:867	si_s658	TRINITY_DN3005_c0_g1	856	876	867	-37.30	-25.40	0.680965147453083	10	5-9,872-868;11-21,866-856	1-4,876-873[UP5];10-10,867-867[SIL]	(((((((((((.(((((....&....))))).)))))))))))	UCAAUUCGAUCGUCCGAGUCA&ACAAUCGGGGGAUCGAAUUGA	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s658_TRINITY_DN3005_c0_g1_867_TPlot.pdf
TRINITY_DN3005_c0_g1:879	si_s664	TRINITY_DN3005_c0_g1	868	888	879	-35.00	-24.20	0.691428571428571	7.5	1-3,888-886;5-17,884-872	4-4,885-885[SIL];18-21,871-868[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UCCGAGUCAAUUCGAUCGUCC&GGGGGAUCGAAUUGAUUAUAG	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s664_TRINITY_DN3005_c0_g1_879_TPlot.pdf
TRINITY_DN3005_c0_g1:885	si_s658	TRINITY_DN3005_c0_g1	874	894	885	-37.30	-25.40	0.680965147453083	10	5-9,890-886;11-21,884-874	1-4,894-891[UP5];10-10,885-885[SIL]	(((((((((((.(((((....&....))))).)))))))))))	UCAAUUCGAUCGUCCGAGUCG&ACAAUCGGGGGAUCGAAUUGA	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s658_TRINITY_DN3005_c0_g1_885_TPlot.pdf
TRINITY_DN3007_c0_g1:1819	si_a344	TRINITY_DN3007_c0_g1	1808	1826	1819	-28.50	-18.66	0.654736842105263	11.5	1-6,1826-1821;12-21,1817-1808	7-11,1820-1818[AILq]	((((((((((...--((((((&)))))).....))))))))))	UGGAGUUAGUCAA--CGGGAC&GUCCCGAAAAUAUUAAUUCUA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN3007_c0_g1_1819_TPlot.pdf
TRINITY_DN3007_c0_g1:2126	si_a148	TRINITY_DN3007_c0_g1	2115	2136	2126	-30.30	-20.70	0.683168316831683	10.5	2-5,2135-2132;6-10,2130-2126;12-20,2124-2116	1-1,2136-2136[UP5];x-x,2131-2131[BULt];11-11,2125-2125[SIL];21-21,2115-2115[UP3]	.(((((((((.(((((.((((.&.))))-))))).))))))))).	GUGACCUUGGCGCGACGAGCGU&UCGUU-GUUGUUUUAAGGUCAA	4	0.999693963058563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN3007_c0_g1_2126_TPlot.pdf
TRINITY_DN3007_c0_g1:2135	si_s369	TRINITY_DN3007_c0_g1	2123	2143	2135	-42.00	-27.40	0.652380952380952	11	5-8,2139-2136;10-15,2135-2130;16-21,2128-2123	1-4,2143-2140[UP5];9-9,x-x[BULq];x-x,2129-2129[BULt]	((((((.((((((-((((....&....)))).))))))-))))))	GGCGCGACGAGCG-UCGGGCGG&UGAACCGAUCGCUCG-CGUGUC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN3007_c0_g1_2135_TPlot.pdf
TRINITY_DN3007_c0_g1:2262	si_s651	TRINITY_DN3007_c0_g1	2251	2271	2262	-41.10	-26.80	0.652068126520681	10	1-6,2271-2266;9-9,2263-2263;12-19,2260-2253	7-8,2265-2264[SIL];10-11,2262-2261[SIL];20-21,2252-2251[UP3]	..((((((((..(..((((((&))))))..)..))))))))..	CCUCCCCCGAACGGCUCGAGG&CCUCGAUACAAUCGGGGGAUC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s651_TRINITY_DN3007_c0_g1_2262_TPlot.pdf
TRINITY_DN3007_c0_g1:409	si_a111	TRINITY_DN3007_c0_g1	398	418	409	-26.20	-18.00	0.687022900763359	17	9-20,410-399	1-8,418-411[UP5];21-21,398-398[UP3]	.((((((((((((........&........)))))))))))).	GGAAACAGGCUCGACGACUGG&AUAAAAUACGAGCUUGUUUUA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN3007_c0_g1_409_TPlot.pdf
TRINITY_DN30081_c2_g1:664	si_a550	TRINITY_DN30081_c2_g1	655	673	664	-30.90	-21.20	0.686084142394822	7	4-12,670-662;15-21,661-655	1-3,673-671[UP5];13-14,x-x[BULq]	(((((((--(((((((((...&...)))))))))..)))))))	GGGAGAU--AGAAAUAGAGAA&CAAUCUAUUUCUUUAUCUCCC	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN30081_c2_g1_664_TPlot.pdf
TRINITY_DN30087_c0_g1:2323	si_a59	TRINITY_DN30087_c0_g1	2312	2334	2323	-34.00	-23.90	0.702941176470588	9.5	1-5,2334-2330;6-9,2328-2325;10-17,2323-2316	x-x,2329-2329[BULt];x-x,2324-2324[BULt];18-21,2315-2312[UP3]	....((((((((.((((.(((((&)))))-))))-))))))))....	CAGCGAAGGAAGCCGAGCUCGGC&GUCGA-CUCG-CUUCUUUCAAAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN30087_c0_g1_2323_TPlot.pdf
TRINITY_DN3008_c0_g1:1110	si_s800	TRINITY_DN3008_c0_g1	1101	1119	1110	-29.70	-20.40	0.686868686868687	7	1-10,1119-1110;13-21,1109-1101	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	AGGUGGCGA--GUAAAAUAUG&CGUAUUUUAUCUUCGUUACCU	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN3008_c0_g1_1110_TPlot.pdf
TRINITY_DN3010_c0_g1:3130	si_a764	TRINITY_DN3010_c0_g1	3118	3139	3130	-28.90	-20.70	0.716262975778547	7.5	1-11,3139-3129;12-13,3127-3126;15-20,3124-3119	x-x,3128-3128[BULt];14-14,3125-3125[SIL];21-21,3118-3118[UP3]	.((((((.((.(((((((((((&)))))))))))-)).)))))).	CUGGAUCCAUACAAGAGCCCGA&UUGGGUUUUUG-AUUGAUUCAA	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN3010_c0_g1_3130_TPlot.pdf
TRINITY_DN3010_c0_g1:924	si_a187	TRINITY_DN3010_c0_g1	914	933	924	-32.00	-21.00	0.65625	9	3-7,931-927;10-16,924-918;18-20,917-915	1-2,933-932[UP5];8-9,926-925[SIL];17-17,x-x[BULq];21-21,914-914[UP3]	.(((-(((((((..(((((..&..)))))..))))))).))).	CGUG-ACAGGGAUCGAUAUAG&UAAUAUCUUUCCCUGUUCACU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN3010_c0_g1_924_TPlot.pdf
TRINITY_DN30112_c0_g1:380	si_s78	TRINITY_DN30112_c0_g1	369	389	380	-26.20	-21.00	0.801526717557252	5.5	1-14,389-376;16-20,374-370	15-15,375-375[SIL];21-21,369-369[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CGAAGGUAGGGGAGGAAAAAA&UUUUUUUCUUUCCUUUCUUCU	1	0.121340502064576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN30112_c0_g1_380_TPlot.pdf
TRINITY_DN3011_c0_g1:1102	si_s229	TRINITY_DN3011_c0_g1	1090	1111	1102	-32.10	-21.30	0.663551401869159	6	2-16,1110-1096;17-21,1094-1090	1-1,1111-1111[UP5];x-x,1095-1095[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	UGUUGAAUUUCUUGUUCAUGUA&CGCGUGAAUAAGGAAU-CAAUA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s229_TRINITY_DN3011_c0_g1_1102_TPlot.pdf
TRINITY_DN3011_c0_g1:1314	si_s24	TRINITY_DN3011_c0_g1	1304	1323	1314	-27.30	-18.50	0.677655677655678	6	2-9,1322-1315;11-14,1313-1310;16-21,1309-1304	1-1,1323-1323[UP5];10-10,1314-1314[SIL];15-15,x-x[BULq]	((((((-((((.((((((((.&.)))))))).)))).))))))	AGAUUU-GUUGGGAUCGAUAG&AUAUUGAUUGCAACUAAAUCU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN3011_c0_g1_1314_TPlot.pdf
TRINITY_DN3011_c0_g1:1378	si_s489	TRINITY_DN3011_c0_g1	1367	1387	1378	-17.90	-12.30	0.687150837988827	9	4-15,1384-1373;17-21,1371-1367	1-3,1387-1385[UP5];16-16,1372-1372[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UUUGUGUAUGUUUGAAUGCAU&AUUUAUUUAAAUAUAAACAAA	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN3011_c0_g1_1378_TPlot.pdf
TRINITY_DN3011_c0_g1:279	si_a68	TRINITY_DN3011_c0_g1	268	289	279	-25.40	-16.90	0.665354330708661	9.5	1-6,289-284;8-19,281-270	7-7,283-282[AILt];20-21,269-268[UP3]	..((((((((((((..((((((&))))))-.))))))))))))..	CAGAAAGCGAUUUGUUGGGAAG&CUUCUU-UCAAAUUGUUUUUCA	3	0.999999999993827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3011_c0_g1_279_TPlot.pdf
TRINITY_DN3011_c0_g1:541	si_a82	TRINITY_DN3011_c0_g1	530	550	541	-23.70	-16.10	0.679324894514768	9	3-19,548-532	1-2,550-549[UP5];20-21,531-530[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAUUUUCUUGGUAAUGGAGUA&UUUUUCAUUAUUAAGAAAAGG	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN3011_c0_g1_541_TPlot.pdf
TRINITY_DN3011_c0_g1:542	si_a81	TRINITY_DN3011_c0_g1	531	551	542	-23.00	-16.10	0.7	9.5	4-20,548-532	1-3,551-549[UP5];21-21,531-531[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AUUUUCUUGGUAAUGGAGUAU&GUUUUUCAUUAUUAAGAAAAG	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN3011_c0_g1_542_TPlot.pdf
TRINITY_DN3011_c0_g1:543	si_a80	TRINITY_DN3011_c0_g1	532	559	543	-22.10	-16.20	0.733031674208145	17	1-5,559-555;6-21,547-532	x-x,554-548[BULt]	((((((((((((((((.......(((((&)))))-------))))))))))))))))	UUUUCUUGGUAAUGGAGUAUUGCGAACA&UGUUU-------UUCAUUAUUAAGAAAA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3011_c0_g1_543_TPlot.pdf
TRINITY_DN3012_c0_g1:1035	si_a543	TRINITY_DN3012_c0_g1	1024	1044	1035	-28.70	-20.50	0.714285714285714	6.5	1-10,1044-1035;13-21,1032-1024	11-12,1034-1033[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	GAAGAAAUAUUUUGAACUGGU&AUCGGUUCAAUCUAUUUCUUU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN3012_c0_g1_1035_TPlot.pdf
TRINITY_DN3012_c0_g1:1927	si_s297	TRINITY_DN3012_c0_g1	1916	1936	1927	-29.80	-20.40	0.684563758389262	10	1-14,1936-1923	15-21,1922-1916[UP3]	.......((((((((((((((&)))))))))))))).......	CAUAGCAGCGAUUCUAGUCGA&UCGAUUGGAAUUGCGAAAAUU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN3012_c0_g1_1927_TPlot.pdf
TRINITY_DN3012_c0_g1:1985	si_a208	TRINITY_DN3012_c0_g1	1973	1994	1985	-24.20	-16.20	0.669421487603306	6	2-5,1993-1990;7-17,1988-1978;18-20,1976-1974	1-1,1994-1994[UP5];6-6,1989-1989[SIL];x-x,1977-1977[BULt];21-21,1973-1973[UP3]	.(((.(((((((((((.((((.&.)))).)))))))))))-))).	CGUUCUAAUUGGUCGAAUUAUG&AAUAAAUCGACUAAUUA-AACU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a208_TRINITY_DN3012_c0_g1_1985_TPlot.pdf
TRINITY_DN3012_c0_g1:1986	si_a207	TRINITY_DN3012_c0_g1	1974	1995	1986	-23.90	-15.90	0.665271966527197	6.5	3-6,1993-1990;8-18,1988-1978;19-21,1976-1974	1-2,1995-1994[UP5];7-7,1989-1989[SIL];x-x,1977-1977[BULt]	(((.(((((((((((.((((..&..)))).)))))))))))-)))	GUUCUAAUUGGUCGAAUUAUGC&UAAUAAAUCGACUAAUUA-AAC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a207_TRINITY_DN3012_c0_g1_1986_TPlot.pdf
TRINITY_DN3012_c0_g1:2101	si_a452	TRINITY_DN3012_c0_g1	2091	2110	2101	-23.00	-15.30	0.665217391304348	5.5	1-7,2110-2104;9-15,2102-2096;17-20,2095-2092	8-8,2103-2103[SIL];16-16,x-x[BULq];21-21,2091-2091[UP3]	.((((-(((((((.(((((((&))))))).))))))).)))).	CUAUA-AUGACAGGAAUUAUC&GAUAAUUGUUGUUAUAUAUAA	2	0.998065616705339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN3012_c0_g1_2101_TPlot.pdf
TRINITY_DN3012_c0_g1:2327	si_s442	TRINITY_DN3012_c0_g1	2317	2336	2327	-23.80	-18.50	0.777310924369748	4	1-12,2336-2325;14-20,2324-2318	13-13,x-x[BULq];21-21,2317-2317[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	CGUUGUUG-AUGUAAUAUGUG&UACAUAUUAUAUAUAACAACA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN3012_c0_g1_2327_TPlot.pdf
TRINITY_DN3012_c0_g1:2331	si_s438	TRINITY_DN3012_c0_g1	2318	2340	2331	-21.20	-14.80	0.69811320754717	9	4-16,2337-2325;17-21,2322-2318	1-3,2340-2338[UP5];x-x,2324-2323[BULt]	(((((..(((((((((((((...&...)))))))))))))--)))))	GUUGUUGAUGUAAUAUGUGAAAG&UAAUUACAUAUUAUAU--AUAAC	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN3012_c0_g1_2331_TPlot.pdf
TRINITY_DN3013_c0_g1:1624	si_a497	TRINITY_DN3013_c0_g1	1610	1633	1624	-32.00	-21.30	0.665625	12	2-5,1632-1629;7-12,1627-1622;13-20,1618-1611	1-1,1633-1633[UP5];6-6,1628-1628[SIL];x-x,1621-1619[BULt];21-21,1610-1610[UP3]	.((((((((...((((((.((((.&.)))).))))))---)))))))).	UGGGAAGAUUGUGAAAGAGGACAA&AUGUCGUUUUUC---GUCUUCCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3013_c0_g1_1624_TPlot.pdf
TRINITY_DN3013_c0_g1:1625	si_a496	TRINITY_DN3013_c0_g1	1611	1634	1625	-32.40	-21.30	0.657407407407407	10	3-6,1632-1629;8-13,1627-1622;14-21,1618-1611	1-2,1634-1633[UP5];7-7,1628-1628[SIL];x-x,1621-1619[BULt]	((((((((...((((((.((((..&..)))).))))))---))))))))	GGGAAGAUUGUGAAAGAGGACAAA&UAUGUCGUUUUUC---GUCUUCCU	4	0.999999999999879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3013_c0_g1_1625_TPlot.pdf
TRINITY_DN3014_c0_g1:1055	si_a836	TRINITY_DN3014_c0_g1	1041	1064	1055	-24.10	-16.40	0.680497925311203	12.5	4-10,1061-1055;11-20,1051-1042	1-3,1064-1062[UP5];x-x,1054-1052[BULt];21-21,1041-1041[UP3]	.((((((((((...(((((((...&...)))))))---)))))))))).	GUAGCAGCUUCAAAUAUUUUUAUA&AAAAAAAAUA---GAAGUUGCUAA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN3014_c0_g1_1055_TPlot.pdf
TRINITY_DN3014_c0_g1:1116	si_a291	TRINITY_DN3014_c0_g1	1103	1125	1116	-27.70	-19.52	0.704693140794224	11.5	1-10,1125-1116;16-21,1108-1103	11-15,1115-1109[AILt]	((((((.......((((((((((&))))))))))--.....))))))	GGAUCUGACAAUAAAAUCCAAGC&GCUUGGAUUU--AAAAAAGAUUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN3014_c0_g1_1116_TPlot.pdf
TRINITY_DN3014_c0_g1:1183	si_a764	TRINITY_DN3014_c0_g1	1172	1193	1183	-28.90	-19.10	0.660899653979239	9	1-3,1193-1191;4-11,1189-1182;13-19,1180-1174	x-x,1190-1190[BULt];12-12,1181-1181[SIL];20-21,1173-1172[UP3]	..(((((((.((((((((.(((&)))-)))))))).)))))))..	CAGGGUCAAACAGAAGCCACAA&UUG-GGUUUUUGAUUGAUUCAA	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN3014_c0_g1_1183_TPlot.pdf
TRINITY_DN3014_c0_g1:1184	si_a763	TRINITY_DN3014_c0_g1	1173	1194	1184	-28.80	-19.80	0.6875	7	1-4,1194-1191;5-12,1189-1182;14-20,1180-1174	x-x,1190-1190[BULt];13-13,1181-1181[SIL];21-21,1173-1173[UP3]	.(((((((.((((((((.((((&))))-)))))))).))))))).	AGGGUCAAACAGAAGCCACAAA&UUUG-GGUUUUUGAUUGAUUCA	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3014_c0_g1_1184_TPlot.pdf
TRINITY_DN3014_c0_g1:1185	si_a762	TRINITY_DN3014_c0_g1	1174	1195	1185	-29.70	-19.40	0.653198653198653	7	2-5,1194-1191;6-13,1189-1182;15-21,1180-1174	1-1,1195-1195[UP5];x-x,1190-1190[BULt];14-14,1181-1181[SIL]	(((((((.((((((((.((((.&.))))-)))))))).)))))))	GGGUCAAACAGAAGCCACAAAC&CUUUG-GGUUUUUGAUUGAUUC	3	0.999999999873981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN3014_c0_g1_1185_TPlot.pdf
TRINITY_DN3014_c0_g1:1723	si_s899	TRINITY_DN3014_c0_g1	1712	1732	1723	-28.30	-19.60	0.692579505300353	5.5	2-8,1731-1725;10-17,1723-1716;20-21,1713-1712	1-1,1732-1732[UP5];9-9,1724-1724[SIL];18-19,1715-1714[SIL]	((..((((((((.(((((((.&.))))))).))))))))..))	GAGGGAAAUUGAUGAGAAAGA&GCUUUCUCUUCAAUUUCAAUU	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3014_c0_g1_1723_TPlot.pdf
TRINITY_DN3014_c0_g1:1726	si_s74	TRINITY_DN3014_c0_g1	1711	1735	1726	-25.00	-16.78	0.6712	14	1-11,1735-1725;13-21,1719-1711	12-12,1724-1720[AILt]	(((((((((.....(((((((((((&)))))))))))----.)))))))))	GGAGGGAAAUUGAUGAGAAAGAUAG&CUAUUUUUUUU----CUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3014_c0_g1_1726_TPlot.pdf
TRINITY_DN3014_c0_g1:1728	si_a788	TRINITY_DN3014_c0_g1	1712	1737	1728	-24.80	-16.20	0.653225806451613	15	1-12,1737-1726;13-19,1720-1714	x-x,1725-1721[BULt];20-21,1713-1712[UP3]	..(((((((.....((((((((((((&))))))))))))-----)))))))..	GAGGGAAAUUGAUGAGAAAGAUAGGG&UUCUAUUUUUCU-----AUUUUCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3014_c0_g1_1728_TPlot.pdf
TRINITY_DN3015_c0_g1:43	si_a763	TRINITY_DN3015_c0_g1	32	55	43	-28.80	-19.20	0.666666666666667	11	1-9,55-47;10-17,43-36;20-20,33-33	x-x,46-44[BULt];18-19,35-34[SIL];21-21,32-32[UP3]	.(..((((((((...(((((((((&)))))))))---))))))))..).	AGUUUCGGUCAAAGUAAACCCAGA&UUUGGGUUU---UUGAUUGAUUCA	4	0.999999994575038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3015_c0_g1_43_TPlot.pdf
TRINITY_DN30167_c0_g1:232	si_s429	TRINITY_DN30167_c0_g1	221	241	232	-21.10	-16.90	0.800947867298578	6	3-18,239-224	1-2,241-240[UP5];19-21,223-221[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAAAUGUAAUUAUUGUUAUUU&AUAUAACAAUAAUUACAUAUU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN30167_c0_g1_232_TPlot.pdf
TRINITY_DN30167_c0_g1:236	si_s425	TRINITY_DN30167_c0_g1	225	245	236	-23.50	-15.40	0.65531914893617	11	7-21,239-225	1-6,245-240[UP5]	(((((((((((((((......&......)))))))))))))))	UGUAAUUAUUGUUAUUUACUU&UUCUAUAUAACAAUAAUUACA	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s425_TRINITY_DN30167_c0_g1_236_TPlot.pdf
TRINITY_DN30175_c0_g1:802	si_a68	TRINITY_DN30175_c0_g1	792	811	802	-25.40	-17.40	0.68503937007874	6	1-5,811-807;7-10,805-802;12-21,801-792	6-6,806-806[SIL];11-11,x-x[BULq]	((((((((((-((((.(((((&))))).)))).))))))))))	UGAAGAAUAG-UUGAUAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.9999999816632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN30175_c0_g1_802_TPlot.pdf
TRINITY_DN30176_c0_g1:1076	si_a79	TRINITY_DN30176_c0_g1	1065	1085	1076	-22.20	-14.90	0.671171171171171	6	1-2,1085-1084;4-16,1082-1070;18-20,1068-1066	3-3,1083-1083[SIL];17-17,1069-1069[SIL];21-21,1065-1065[UP3]	.(((.(((((((((((((.((&)).))))))))))))).))).	CUUCCUAAUAAUGAGAAGGAA&UUGUUUUUCAUUAUUAAGAAA	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN30176_c0_g1_1076_TPlot.pdf
TRINITY_DN30176_c0_g1:1089	si_s78	TRINITY_DN30176_c0_g1	1078	1098	1089	-26.20	-17.60	0.67175572519084	10.5	2-4,1097-1095;7-9,1092-1090;12-21,1087-1078	1-1,1098-1098[UP5];5-6,1094-1093[SIL];10-11,1089-1088[SIL]	((((((((((..(((..(((.&.)))..)))..))))))))))	AGAAGGAAGGUUGGAUUAAAG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN30176_c0_g1_1089_TPlot.pdf
TRINITY_DN30176_c0_g1:156	si_s558	TRINITY_DN30176_c0_g1	145	165	156	-28.20	-21.70	0.769503546099291	5.5	1-15,165-151;17-19,149-147	16-16,150-150[SIL];20-21,146-145[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	CAGUCGUGAAAGUAUUAGUUC&GAAUUAAUAUUUUCGGGACAA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN30176_c0_g1_156_TPlot.pdf
TRINITY_DN30176_c0_g1:382	si_a460	TRINITY_DN30176_c0_g1	371	391	382	-21.60	-16.50	0.763888888888889	9	1-8,391-384;10-18,382-374	9-9,383-383[SIL];19-21,373-371[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AAAGCAUGUUGUUUGUGACAA&UUGUUAUAUAUAAUAUGUAAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN30176_c0_g1_382_TPlot.pdf
TRINITY_DN30176_c0_g1:943	si_s809	TRINITY_DN30176_c0_g1	927	952	943	-28.50	-18.80	0.659649122807018	9.5	1-14,952-939;15-18,933-930	x-x,938-934[BULt];19-21,929-927[UP3]	...((((.....((((((((((((((&))))))))))))))-----))))...	GGCAGGAAAAAUAAAGGUAAUGAAGA&UCUUCGUUACCUUU-----UCUUAAU	3	0.999999999899138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN30176_c0_g1_943_TPlot.pdf
TRINITY_DN30176_c0_g1:944	si_s808	TRINITY_DN30176_c0_g1	928	953	944	-28.60	-18.80	0.657342657342657	9.5	2-15,952-939;16-19,933-930	1-1,953-953[UP5];x-x,938-934[BULt];20-21,929-928[UP3]	..((((.....((((((((((((((.&.))))))))))))))-----))))..	GCAGGAAAAAUAAAGGUAAUGAAGAA&AUCUUCGUUACCUUU-----UCUUAA	3	0.999999999998013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN30176_c0_g1_944_TPlot.pdf
TRINITY_DN30176_c0_g1:945	si_s807	TRINITY_DN30176_c0_g1	929	954	945	-28.90	-18.80	0.650519031141869	10.5	3-16,952-939;17-20,933-930	1-2,954-953[UP5];x-x,938-934[BULt];21-21,929-929[UP3]	.((((.....((((((((((((((..&..))))))))))))))-----)))).	CAGGAAAAAUAAAGGUAAUGAAGAAG&UAUCUUCGUUACCUUU-----UCUUA	3	0.999999999999832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN30176_c0_g1_945_TPlot.pdf
TRINITY_DN30176_c0_g1:948	si_s804	TRINITY_DN30176_c0_g1	937	957	948	-27.90	-18.40	0.659498207885305	12	6-19,952-939	1-5,957-953[UP5];20-21,938-937[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUAAAGGUAAUGAAGAAGUUU&UUUUAUCUUCGUUACCUUUUC	4	0.999999999996049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN30176_c0_g1_948_TPlot.pdf
TRINITY_DN30176_c0_g1:950	si_s802	TRINITY_DN30176_c0_g1	939	959	950	-26.40	-18.40	0.696969696969697	13.5	8-21,952-939	1-7,959-953[UP5]	((((((((((((((.......&.......))))))))))))))	AAAGGUAAUGAAGAAGUUUUG&UAUUUUAUCUUCGUUACCUUU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN30176_c0_g1_950_TPlot.pdf
TRINITY_DN3017_c0_g1:3051	si_a191	TRINITY_DN3017_c0_g1	3042	3060	3051	-32.00	-20.80	0.65	8	1-10,3060-3051;13-18,3050-3045	11-12,x-x[BULq];19-21,3044-3042[UP3]	...((((((--((((((((((&))))))))))..))))))...	AGAUAGUGA--AGGGGAAGAU&AUCUUUCCCUGUUCACUAAUA	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN3017_c0_g1_3051_TPlot.pdf
TRINITY_DN3017_c0_g1:3059	si_a183	TRINITY_DN3017_c0_g1	3048	3067	3059	-30.10	-20.20	0.67109634551495	7	1-4,3067-3064;6-18,3063-3051	5-5,x-x[BULq];19-21,3050-3048[UP3]	...(((((((((((((-((((&)))).)))))))))))))...	UGAAGGGGAAGAUGUU-UCUG&UAGAUAAUAUCUUUCCCUGUU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN3017_c0_g1_3059_TPlot.pdf
TRINITY_DN3017_c0_g1:3060	si_a182	TRINITY_DN3017_c0_g1	3049	3068	3060	-31.80	-20.90	0.657232704402516	7.5	2-5,3067-3064;7-19,3063-3051	1-1,3068-3068[UP5];6-6,x-x[BULq];20-21,3050-3049[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	GAAGGGGAAGAUGUU-UCUGA&CUAGAUAAUAUCUUUCCCUGU	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN3017_c0_g1_3060_TPlot.pdf
TRINITY_DN3017_c0_g1:3061	si_a181	TRINITY_DN3017_c0_g1	3050	3069	3061	-32.00	-20.90	0.653125	8.5	3-6,3067-3064;8-20,3063-3051	1-2,3069-3068[UP5];7-7,x-x[BULq];21-21,3050-3050[UP3]	.(((((((((((((-((((..&..)))).))))))))))))).	AAGGGGAAGAUGUU-UCUGAC&UCUAGAUAAUAUCUUUCCCUG	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN3017_c0_g1_3061_TPlot.pdf
TRINITY_DN3017_c0_g1:3062	si_a180	TRINITY_DN3017_c0_g1	3051	3069	3062	-32.10	-23.30	0.725856697819315	5.5	1-3,3069-3067;5-7,3066-3064;9-21,3063-3051	4-4,x-x[BULq];8-8,x-x[BULq]	(((((((((((((-(((-(((&))).))).)))))))))))))	AGGGGAAGAUGUU-UCU-GAC&GUCUAGAUAAUAUCUUUCCCU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN3017_c0_g1_3062_TPlot.pdf
TRINITY_DN3017_c0_g1:3388	si_s83	TRINITY_DN3017_c0_g1	3377	3397	3388	-30.90	-20.20	0.653721682847896	5.5	2-13,3396-3385;15-17,3383-3381;19-21,3379-3377	1-1,3397-3397[UP5];14-14,3384-3384[SIL];18-18,3380-3380[SIL]	(((.(((.((((((((((((.&.)))))))))))).))).)))	GAAUGGGUGGAAAGGAAAGGG&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3017_c0_g1_3388_TPlot.pdf
TRINITY_DN3017_c0_g1:3393	si_s78	TRINITY_DN3017_c0_g1	3382	3402	3393	-26.20	-20.00	0.763358778625954	9	3-18,3400-3385;20-21,3383-3382	1-2,3402-3401[UP5];19-19,3384-3384[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	GGUGGAAAGGAAAGGGAGGUU&UUUUUUUCUUUCCUUUCUUCU	4	0.99999999928247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3017_c0_g1_3393_TPlot.pdf
TRINITY_DN3017_c0_g1:3650	si_s93	TRINITY_DN3017_c0_g1	3639	3659	3650	-34.80	-23.20	0.666666666666667	5.5	1-12,3659-3648;14-16,3646-3644;18-21,3642-3639	13-13,3647-3647[SIL];17-17,3643-3643[SIL]	((((.(((.((((((((((((&)))))))))))).))).))))	GAUUGGAGACGGAGAAGAGGA&UCUUCUUCUUCGCUUCGGAUU	2	0.999999360952188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3017_c0_g1_3650_TPlot.pdf
TRINITY_DN3017_c0_g1:3651	si_s92	TRINITY_DN3017_c0_g1	3639	3660	3651	-34.90	-22.70	0.650429799426934	8	2-13,3659-3648;14-18,3646-3642	1-1,3660-3660[UP5];x-x,3647-3647[BULt];19-21,3641-3639[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	GAUUGGAGACGGAGAAGAGGAC&UUCUUCUUCUUCG-CUUCGGAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3017_c0_g1_3651_TPlot.pdf
TRINITY_DN30185_c0_g1:331	si_s10	TRINITY_DN30185_c0_g1	319	340	331	-23.80	-15.80	0.663865546218487	6.5	2-11,339-330;12-19,328-321	1-1,340-340[UP5];x-x,329-329[BULt];20-21,320-319[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	UAAAUGUAGUAAGUAAUAAGUU&UACUUAUUAUU-ACUAUAUUGA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN30185_c0_g1_331_TPlot.pdf
TRINITY_DN30185_c0_g1:334	si_s7	TRINITY_DN30185_c0_g1	322	343	334	-21.70	-14.50	0.668202764976959	9	5-14,339-330;15-21,328-322	1-4,343-340[UP5];x-x,329-329[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	AUGUAGUAAGUAAUAAGUUUUC&UAUUACUUAUUAUU-ACUAUAU	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN30185_c0_g1_334_TPlot.pdf
TRINITY_DN3018_c0_g1:101	si_s74	TRINITY_DN3018_c0_g1	90	110	101	-25.00	-17.30	0.692	6.5	1-9,110-102;11-13,100-98;15-17,96-94;19-21,92-90	10-10,101-101[SIL];14-14,97-97[SIL];18-18,93-93[SIL]	(((.(((.(((.(((((((((&))))))))).))).))).)))	GAAUGGAUGGAUGAAAGAUAG&CUAUUUUUUUUCUUUCCUUUC	2	0.99999999998354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3018_c0_g1_101_TPlot.pdf
TRINITY_DN3018_c0_g1:103	si_s72	TRINITY_DN3018_c0_g1	92	112	103	-24.10	-16.50	0.684647302904564	8.5	1-11,112-102;13-15,100-98;17-19,96-94	12-12,101-101[SIL];16-16,97-97[SIL];20-21,93-92[UP3]	..(((.(((.(((((((((((&))))))))))).))).)))..	AUGGAUGGAUGAAAGAUAGGA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3018_c0_g1_103_TPlot.pdf
TRINITY_DN3018_c0_g1:122	si_a329	TRINITY_DN3018_c0_g1	108	131	122	-29.60	-19.90	0.672297297297297	11	1-10,131-122;11-19,118-110	x-x,121-119[BULt];20-21,109-108[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UAGGACAAGGAGAAAUAAGGGAAU&AUUUUUUUAU---UCCUUGUCCCG	2	0.999811308385682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3018_c0_g1_122_TPlot.pdf
TRINITY_DN3018_c0_g1:123	si_a328	TRINITY_DN3018_c0_g1	109	132	123	-30.10	-20.20	0.67109634551495	11	2-11,131-122;12-20,118-110	1-1,132-132[UP5];x-x,121-119[BULt];21-21,109-109[UP3]	.(((((((((...((((((((((.&.))))))))))---))))))))).	AGGACAAGGAGAAAUAAGGGAAUA&GAUUUUUUUAU---UCCUUGUCCC	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN3018_c0_g1_123_TPlot.pdf
TRINITY_DN3018_c0_g1:289	si_a406	TRINITY_DN3018_c0_g1	278	298	289	-19.80	-14.80	0.747474747474748	7.5	2-10,297-289;12-19,287-280	1-1,298-298[UP5];11-11,288-288[SIL];20-21,279-278[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UAUAAGUAUGUACAGAACAAG&AUUGUUUUGUUUAUAUUUAAA	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3018_c0_g1_289_TPlot.pdf
TRINITY_DN301_c0_g1:5340	si_s312	TRINITY_DN301_c0_g1	5329	5349	5340	-29.00	-20.30	0.7	11.5	6-12,5344-5338;14-20,5336-5330	1-5,5349-5345[UP5];13-13,5337-5337[SIL];21-21,5329-5329[UP3]	.(((((((.(((((((.....&.....))))))).))))))).	GAACGAGACGGACAGACAGGA&AAAAUUCUGUCCUUCUUGUUA	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN301_c0_g1_5340_TPlot.pdf
TRINITY_DN301_c0_g1:5546	si_s92	TRINITY_DN301_c0_g1	5534	5555	5546	-34.90	-26.30	0.753581661891118	5	1-12,5555-5544;14-16,5542-5540;17-20,5538-5535	13-13,5543-5543[SIL];x-x,5539-5539[BULt];21-21,5534-5534[UP3]	.((((.(((.((((((((((((&)))))))))))).)))-)))).	UUCCGCGGGGGAAGAGGAAGAA&UUCUUCUUCUUCGCUU-CGGAU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN301_c0_g1_5546_TPlot.pdf
TRINITY_DN301_c0_g1:5550	si_s73	TRINITY_DN301_c0_g1	5539	5559	5550	-24.00	-16.50	0.6875	12.5	5-20,5555-5540	1-4,5559-5556[UP5];21-21,5539-5539[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGGGGAAGAGGAAGAAGAUC&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN301_c0_g1_5550_TPlot.pdf
TRINITY_DN301_c0_g1:5925	si_a501	TRINITY_DN301_c0_g1	5914	5935	5925	-33.50	-23.50	0.701492537313433	8.5	1-1,5935-5935;3-9,5933-5927;10-16,5925-5919;18-20,5917-5915	2-2,5934-5934[SIL];x-x,5926-5926[BULt];17-17,5918-5918[SIL];21-21,5914-5914[UP3]	.(((.(((((((.(((((((.(&).)))))))-))))))).))).	CUCCCGGGAGGAUCGAAGAAGG&CGUUUUUCG-UCUUCCUUGGAA	4	0.999901665387931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN301_c0_g1_5925_TPlot.pdf
TRINITY_DN301_c0_g1:5930	si_s86	TRINITY_DN301_c0_g1	5918	5939	5930	-32.90	-22.10	0.671732522796353	9.5	3-12,5937-5928;14-18,5925-5921;20-20,5919-5919	1-2,5939-5938[UP5];13-13,5927-5926[AILt];19-19,5920-5920[SIL];21-21,5918-5918[UP3]	.(.(((((..((((((((((..&..))))))))))-.))))).).	CGGGAGGAUCGAAGAAGGGACA&UUUCCUUUCUUC-UUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN301_c0_g1_5930_TPlot.pdf
TRINITY_DN301_c0_g1:6101	si_s376	TRINITY_DN301_c0_g1	6090	6110	6101	-42.50	-27.70	0.651764705882353	8	2-6,6109-6105;9-9,6102-6102;11-20,6100-6091	1-1,6110-6110[UP5];7-8,6104-6103[SIL];10-10,6101-6101[SIL];21-21,6090-6090[UP3]	.((((((((((.(..(((((.&.)))))..).)))))))))).	GAAGGCGGACAAGAAAGCGAA&AUCGCUCGCGUGUCCGCCUUA	2	0.999804129748348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN301_c0_g1_6101_TPlot.pdf
TRINITY_DN30203_c0_g1:626	si_a784	TRINITY_DN30203_c0_g1	615	639	626	-24.70	-16.60	0.672064777327935	9.5	1-5,639-635;6-9,632-629;10-21,626-615	x-x,634-633[BULt];x-x,628-627[BULt]	((((((((((((..((((..(((((&)))))--))))--))))))))))))	GAGAUGGAAAAAGUUAGAACAGAGU&ACUCU--UCUA--UUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN30203_c0_g1_626_TPlot.pdf
TRINITY_DN3022_c0_g1:1595	si_a327	TRINITY_DN3022_c0_g1	1584	1604	1595	-28.40	-20.40	0.71830985915493	5	2-19,1603-1586	1-1,1604-1604[UP5];20-21,1585-1584[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAAUAGGGAAUAAAAAGAUCU&UGAUUUUUUUAUUCCUUGUCC	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN3022_c0_g1_1595_TPlot.pdf
TRINITY_DN3022_c0_g1:1599	si_a323	TRINITY_DN3022_c0_g1	1588	1607	1599	-26.80	-18.00	0.671641791044776	6.5	3-4,1605-1604;6-21,1603-1588	1-2,1607-1606[UP5];5-5,x-x[BULq]	((((((((((((((((-((..&..)).))))))))))))))))	AGGGAAUAAAAAGAUC-UGUA&UCCAUGAUUUUUUUAUUCCUU	3	0.999999141658786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3022_c0_g1_1599_TPlot.pdf
TRINITY_DN3024_c0_g1:272	si_a74	TRINITY_DN3024_c0_g1	261	281	272	-22.20	-15.30	0.689189189189189	10	4-9,278-273;11-21,271-261	1-3,281-279[UP5];10-10,272-272[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UGAUGAUGAAGUGCAAUUGUA&UCAAAUUGUUUUUCAUUAUUA	3	0.999998739031866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN3024_c0_g1_272_TPlot.pdf
TRINITY_DN30251_c0_g3:2056	si_a73	TRINITY_DN30251_c0_g3	2045	2066	2056	-21.90	-17.60	0.80365296803653	7.5	1-4,2066-2063;6-20,2060-2046	5-5,2062-2061[AILt];21-21,2045-2045[UP3]	.(((((((((((((((..((((&))))-.))))))))))))))).	UGUAAUGAAAAGCAAUGAUGGA&UUCA-AAUUGUUUUUCAUUAUU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN30251_c0_g3_2056_TPlot.pdf
TRINITY_DN30253_c0_g1:1647	si_a762	TRINITY_DN30253_c0_g1	1636	1657	1647	-29.70	-20.30	0.683501683501683	6.5	1-5,1657-1653;6-14,1651-1643;16-21,1641-1636	x-x,1652-1652[BULt];15-15,1642-1642[SIL]	((((((.(((((((((.(((((&)))))-))))))))).))))))	GAGUUGUUCAAAAACCACGAGG&CUUUG-GGUUUUUGAUUGAUUC	4	0.999983337958052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN30253_c0_g1_1647_TPlot.pdf
TRINITY_DN30253_c0_g1:1664	si_s90	TRINITY_DN30253_c0_g1	1652	1674	1664	-35.30	-24.90	0.705382436260623	5	1-9,1674-1666;10-13,1664-1661;14-20,1659-1653	x-x,1665-1665[BULt];x-x,1660-1660[BULt];21-21,1652-1652[UP3]	.(((((((.((((.(((((((((&)))))))))-))))-))))))).	ACGAGGUGUAAGAUAGAAGAAAG&CUUUCUUCU-UCUU-CGCUUCGG	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN30253_c0_g1_1664_TPlot.pdf
TRINITY_DN30263_c0_g1:4099	si_s808	TRINITY_DN30263_c0_g1	4087	4112	4099	-28.60	-19.00	0.664335664335664	15	2-8,4111-4105;9-11,4100-4098;12-20,4096-4088	1-1,4112-4112[UP5];x-x,4104-4101[BULt];x-x,4097-4097[BULt];21-21,4087-4087[UP3]	.(((((((((.(((....(((((((.&.)))))))----)))-))))))))).	CUGAGAAGAGCGUGCAGAGCGAAGAC&AUCUUCGU----UAC-CUUUUCUUAA	3	0.999999999886112	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN30263_c0_g1_4099_TPlot.pdf
TRINITY_DN30263_c0_g1:549	si_a637	TRINITY_DN30263_c0_g1	536	558	549	-25.80	-17.26	0.668992248062016	11	1-10,558-549;14-21,543-536	11-13,548-544[AILt]	((((((((.....((((((((((&))))))))))--...))))))))	AUGUUGCUGGUCCAAAAGUCGAC&GUCGAUUUUU--UUGAGUAAUAU	4	0.999999991631285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN30263_c0_g1_549_TPlot.pdf
TRINITY_DN30263_c0_g1:6261	si_s312	TRINITY_DN30263_c0_g1	6250	6270	6261	-29.00	-19.10	0.658620689655173	14.5	5-17,6266-6254;19-20,6252-6251	1-4,6270-6267[UP5];18-18,6253-6253[SIL];21-21,6250-6250[UP3]	.((.(((((((((((((....&....))))))))))))).)).	AGAGAGGAGGGGCGGGGCAGC&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999999727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN30263_c0_g1_6261_TPlot.pdf
TRINITY_DN30263_c0_g1:6292	si_s564	TRINITY_DN30263_c0_g1	6281	6301	6292	-31.20	-22.00	0.705128205128205	8	2-13,6300-6289;15-17,6287-6285	1-1,6301-6301[UP5];14-14,6288-6288[SIL];18-21,6284-6281[UP3]	....(((.((((((((((((.&.)))))))))))).)))....	UUUCCCUGGUCCCGGAAAUGG&AUAUUUUCGGGACAAGGAAUA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s564_TRINITY_DN30263_c0_g1_6292_TPlot.pdf
TRINITY_DN30263_c0_g1:6323	si_s628	TRINITY_DN30263_c0_g1	6312	6336	6323	-35.40	-25.10	0.709039548022599	11.5	1-5,6336-6332;6-20,6327-6313	x-x,6331-6328[BULt];21-21,6312-6312[UP3]	.(((((((((((((((....(((((&)))))----))))))))))))))).	CAGCGCUUACGAAGAGCGGUAUCGU&GCGAU----CUUUUCGUAGGCGUUU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN30263_c0_g1_6323_TPlot.pdf
TRINITY_DN30263_c0_g1:6812	si_s888	TRINITY_DN30263_c0_g1	6801	6821	6812	-26.80	-17.50	0.652985074626866	18.5	9-20,6813-6802	1-8,6821-6814[UP5];21-21,6801-6801[UP3]	.((((((((((((........&........)))))))))))).	UGGGGAAGGCCUGCCGGCAGC&AAAAUAAAUAGGCUUUCUCUU	3	0.999999298961298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN30263_c0_g1_6812_TPlot.pdf
TRINITY_DN30263_c0_g1:6813	si_s887	TRINITY_DN30263_c0_g1	6802	6822	6813	-26.80	-17.50	0.652985074626866	19.5	10-21,6813-6802	1-9,6822-6814[UP5]	((((((((((((.........&.........))))))))))))	GGGGAAGGCCUGCCGGCAGCG&AAAAAUAAAUAGGCUUUCUCU	2	0.993689766352297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN30263_c0_g1_6813_TPlot.pdf
TRINITY_DN30263_c0_g1:6828	si_s856	TRINITY_DN30263_c0_g1	6814	6838	6828	-43.30	-28.98	0.669284064665127	9	1-8,6838-6831;9-12,6829-6826;13-15,6824-6822;18-21,6817-6814	x-x,6830-6830[BULt];x-x,6825-6825[BULt];16-17,6821-6818[AILt]	((((....(((.((((.((((((((&))))))))-))))-)))--..))))	CCGGCAGCGGUGCUGGAGAGUCGAC&GUCGACUC-CUAG-ACC--UACCGG	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s856_TRINITY_DN30263_c0_g1_6828_TPlot.pdf
TRINITY_DN30276_c0_g1:751	si_a838	TRINITY_DN30276_c0_g1	740	760	751	-26.50	-17.30	0.652830188679245	17	9-21,752-740	1-8,760-753[UP5]	(((((((((((((........&........)))))))))))))	GGUUAGCGACUUUGUGGACUU&AAAAAAUAGAAGUUGCUAACU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN30276_c0_g1_751_TPlot.pdf
TRINITY_DN3027_c0_g1:1005	si_a704	TRINITY_DN3027_c0_g1	994	1014	1005	-29.30	-19.60	0.668941979522184	11	2-14,1013-1001	1-1,1014-1014[UP5];15-21,1000-994[UP3]	.......(((((((((((((.&.))))))))))))).......	UUCGGGAUGGGAUGUGCUAGA&ACUGGUACAUUCCAAAAUAAU	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN3027_c0_g1_1005_TPlot.pdf
TRINITY_DN3027_c0_g1:1006	si_a703	TRINITY_DN3027_c0_g1	995	1015	1006	-29.20	-19.60	0.671232876712329	12	3-15,1013-1001	1-2,1015-1014[UP5];16-21,1000-995[UP3]	......(((((((((((((..&..)))))))))))))......	UCGGGAUGGGAUGUGCUAGAC&AACUGGUACAUUCCAAAAUAA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN3027_c0_g1_1006_TPlot.pdf
TRINITY_DN3027_c0_g1:677	si_a369	TRINITY_DN3027_c0_g1	666	686	677	-30.00	-21.80	0.726666666666667	7	1-10,686-677;13-21,674-666	11-12,676-675[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	GAAGUCAUUCCUGAUUCGGUU&GAUCGGAUCAAAAAUGAUUUC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN3027_c0_g1_677_TPlot.pdf
TRINITY_DN3027_c0_g1:679	si_a367	TRINITY_DN3027_c0_g1	668	688	679	-28.80	-19.60	0.680555555555556	5.5	1-12,688-677;15-21,674-668	13-14,676-675[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AGUCAUUCCUGAUUCGGUUAA&UUGAUCGGAUCAAAAAUGAUU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a367_TRINITY_DN3027_c0_g1_679_TPlot.pdf
TRINITY_DN3027_c0_g1:680	si_a366	TRINITY_DN3027_c0_g1	669	689	680	-28.80	-19.50	0.677083333333333	5.5	1-13,689-677;16-21,674-669	14-15,676-675[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	GUCAUUCCUGAUUCGGUUAAA&UUUGAUCGGAUCAAAAAUGAU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a366_TRINITY_DN3027_c0_g1_680_TPlot.pdf
TRINITY_DN3027_c0_g1:797	si_a504	TRINITY_DN3027_c0_g1	786	806	797	-32.90	-22.10	0.671732522796353	12	4-16,803-791	1-3,806-804[UP5];17-21,790-786[UP3]	.....(((((((((((((...&...))))))))))))).....	GUUCACCAAGGAAGGCGGUGU&UUUUCGUCUUCCUUGGAAUGU	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN3027_c0_g1_797_TPlot.pdf
TRINITY_DN3027_c0_g1:798	si_a503	TRINITY_DN3027_c0_g1	787	807	798	-32.10	-22.10	0.688473520249221	13	5-17,803-791	1-4,807-804[UP5];18-21,790-787[UP3]	....(((((((((((((....&....)))))))))))))....	UUCACCAAGGAAGGCGGUGUA&UUUUUCGUCUUCCUUGGAAUG	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN3027_c0_g1_798_TPlot.pdf
TRINITY_DN3027_c0_g1:801	si_a500	TRINITY_DN3027_c0_g1	790	810	801	-34.40	-23.38	0.679651162790698	11	1-2,810-809;4-4,807-807;8-20,803-791	3-3,808-808[SIL];5-7,806-804[SIL];21-21,790-790[UP3]	.(((((((((((((...(.((&)).)...))))))))))))).	ACCAAGGAAGGCGGUGUAGGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999998660078045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3027_c0_g1_801_TPlot.pdf
TRINITY_DN3027_c0_g1:804	si_s480	TRINITY_DN3027_c0_g1	793	813	804	-25.00	-17.00	0.68	12	1-12,813-802	13-21,801-793[UP3]	.........((((((((((((&)))))))))))).........	AAGGAAGGCGGUGUAGGAUCC&GGAUCCUAUAUUUAUUUAAAU	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN3027_c0_g1_804_TPlot.pdf
TRINITY_DN3027_c0_g1:983	si_s445	TRINITY_DN3027_c0_g1	972	991	983	-21.10	-15.50	0.734597156398104	10	1-9,991-983;13-21,980-972	10-12,982-981[AILq]	(((((((((..-(((((((((&)))))))))...)))))))))	GGUUGUUGUGG-GUGUAGUAU&AUAUUAUAUAUAACAACAAUU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN3027_c0_g1_983_TPlot.pdf
TRINITY_DN3027_c0_g1:990	si_a345	TRINITY_DN3027_c0_g1	979	1000	990	-26.90	-17.90	0.66542750929368	6.5	1-8,1000-993;9-14,991-986;17-21,983-979	x-x,992-992[BULt];15-16,985-984[SIL]	(((((..((((((.((((((((&))))))))-))))))..)))))	GUGGGUGUAGUAUCUUUCGGGA&UCCCGAAA-AUAUUAAUUCUAU	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN3027_c0_g1_990_TPlot.pdf
TRINITY_DN3027_c0_g1:995	si_a341	TRINITY_DN3027_c0_g1	983	1004	995	-27.80	-19.40	0.697841726618705	8.5	1-12,1004-993;13-18,991-986	x-x,992-992[BULt];19-21,985-983[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	GUGUAGUAUCUUUCGGGAUGGG&CUUGUCCCGAAA-AUAUUAAUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN3027_c0_g1_995_TPlot.pdf
TRINITY_DN3027_c0_g1:996	si_a340	TRINITY_DN3027_c0_g1	984	1005	996	-30.20	-19.80	0.655629139072848	7.5	2-13,1004-993;14-19,991-986	1-1,1005-1005[UP5];x-x,992-992[BULt];20-21,985-984[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	UGUAGUAUCUUUCGGGAUGGGA&CCUUGUCCCGAAA-AUAUUAAU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a340_TRINITY_DN3027_c0_g1_996_TPlot.pdf
TRINITY_DN30284_c0_g1:1421	si_a799	TRINITY_DN30284_c0_g1	1410	1431	1421	-32.50	-22.30	0.686153846153846	5.5	1-9,1431-1423;10-17,1421-1414;19-20,1412-1411	x-x,1422-1422[BULt];18-18,1413-1413[SIL];21-21,1410-1410[UP3]	.((.((((((((.(((((((((&)))))))))-)))))))).)).	GUCCCUUCGGAUCUGGAGAAUG&UAUUUUCCA-AUCCGAAGCGAA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN30284_c0_g1_1421_TPlot.pdf
TRINITY_DN30286_c0_g1:116	si_a188	TRINITY_DN30286_c0_g1	105	125	116	-32.00	-22.20	0.69375	14.5	7-20,119-106	1-6,125-120[UP5];21-21,105-105[UP3]	.((((((((((((((......&......)))))))))))))).	AAGUGGGCGGGGAGAACCGCG&AAUAUCUUUCCCUGUUCACUA	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN30286_c0_g1_116_TPlot.pdf
TRINITY_DN30286_c0_g1:2400	si_a725	TRINITY_DN30286_c0_g1	2389	2409	2400	-38.10	-25.40	0.666666666666667	5.5	1-2,2409-2408;4-13,2406-2397;15-17,2395-2393;19-21,2391-2389	3-3,2407-2407[SIL];14-14,2396-2396[SIL];18-18,2392-2392[SIL]	(((.(((.((((((((((.((&)).)))))))))).))).)))	GGUUGAGUUGUCCGAGUAUCG&CGUUACUCGGGCAUCUUUACC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN30286_c0_g1_2400_TPlot.pdf
TRINITY_DN30286_c0_g1:2401	si_a724	TRINITY_DN30286_c0_g1	2390	2410	2401	-36.70	-23.90	0.651226158038147	5.5	1-3,2410-2408;5-14,2406-2397;16-18,2395-2393;20-21,2391-2390	4-4,2407-2407[SIL];15-15,2396-2396[SIL];19-19,2392-2392[SIL]	((.(((.((((((((((.(((&))).)))))))))).))).))	GUUGAGUUGUCCGAGUAUCGA&UCGUUACUCGGGCAUCUUUAC	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN30286_c0_g1_2401_TPlot.pdf
TRINITY_DN30286_c0_g1:2423	si_s809	TRINITY_DN30286_c0_g1	2412	2432	2423	-28.50	-18.80	0.659649122807018	10	1-13,2432-2420	14-21,2419-2412[UP3]	........(((((((((((((&)))))))))))))........	CAGCACGCGAGGUGACGAAGG&UCUUCGUUACCUUUUCUUAAU	3	0.999999999786684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN30286_c0_g1_2423_TPlot.pdf
TRINITY_DN30286_c0_g1:2424	si_s808	TRINITY_DN30286_c0_g1	2413	2433	2424	-28.60	-18.80	0.657342657342657	10.5	2-14,2432-2420	1-1,2433-2433[UP5];15-21,2419-2413[UP3]	.......(((((((((((((.&.))))))))))))).......	AGCACGCGAGGUGACGAAGGC&AUCUUCGUUACCUUUUCUUAA	2	0.999999945639282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN30286_c0_g1_2424_TPlot.pdf
TRINITY_DN30286_c0_g1:2425	si_s807	TRINITY_DN30286_c0_g1	2414	2434	2425	-28.90	-18.80	0.650519031141869	11.5	3-15,2432-2420	1-2,2434-2433[UP5];16-21,2419-2414[UP3]	......(((((((((((((..&..)))))))))))))......	GCACGCGAGGUGACGAAGGCU&UAUCUUCGUUACCUUUUCUUA	4	0.999999999999898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN30286_c0_g1_2425_TPlot.pdf
TRINITY_DN30286_c0_g1:2426	si_s806	TRINITY_DN30286_c0_g1	2415	2435	2426	-28.60	-18.80	0.657342657342657	12.5	4-16,2432-2420	1-3,2435-2433[UP5];17-21,2419-2415[UP3]	.....(((((((((((((...&...))))))))))))).....	CACGCGAGGUGACGAAGGCUC&UUAUCUUCGUUACCUUUUCUU	3	0.999999999999924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN30286_c0_g1_2426_TPlot.pdf
TRINITY_DN30286_c0_g1:2427	si_s805	TRINITY_DN30286_c0_g1	2416	2436	2427	-28.60	-18.80	0.657342657342657	13.5	5-17,2432-2420	1-4,2436-2433[UP5];18-21,2419-2416[UP3]	....(((((((((((((....&....)))))))))))))....	ACGCGAGGUGACGAAGGCUCA&UUUAUCUUCGUUACCUUUUCU	4	0.999999999998901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN30286_c0_g1_2427_TPlot.pdf
TRINITY_DN30286_c0_g1:2428	si_s804	TRINITY_DN30286_c0_g1	2417	2437	2428	-27.90	-18.80	0.673835125448029	14	6-18,2432-2420	1-5,2437-2433[UP5];19-21,2419-2417[UP3]	...(((((((((((((.....&.....)))))))))))))...	CGCGAGGUGACGAAGGCUCAG&UUUUAUCUUCGUUACCUUUUC	2	0.999993688865964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN30286_c0_g1_2428_TPlot.pdf
TRINITY_DN30286_c0_g1:2542	si_a295	TRINITY_DN30286_c0_g1	2531	2552	2542	-27.50	-18.36	0.667636363636364	16	1-5,2552-2548;12-21,2540-2531	6-11,2547-2541[AILt]	((((((((((.......(((((&)))))-......))))))))))	GAGCGGAUCUCGUCCUCGAUCC&GGAUU-UAAAAAAGAUUCGCUU	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN30286_c0_g1_2542_TPlot.pdf
TRINITY_DN3028_c0_g1:1277	si_s431	TRINITY_DN3028_c0_g1	1266	1286	1277	-21.10	-13.90	0.658767772511848	6	2-9,1285-1278;11-18,1276-1269	1-1,1286-1286[UP5];10-10,1277-1277[SIL];19-21,1268-1266[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	GUUAUAUGUAAAUAUUGUUAC&AUAACAAUAAUUACAUAUUAU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN3028_c0_g1_1277_TPlot.pdf
TRINITY_DN3028_c0_g1:1279	si_s429	TRINITY_DN3028_c0_g1	1268	1288	1279	-21.10	-13.90	0.658767772511848	8	4-11,1285-1278;13-20,1276-1269	1-3,1288-1286[UP5];12-12,1277-1277[SIL];21-21,1268-1268[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UAUAUGUAAAUAUUGUUACUA&AUAUAACAAUAAUUACAUAUU	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN3028_c0_g1_1279_TPlot.pdf
TRINITY_DN30291_c0_g1:460	si_a825	TRINITY_DN30291_c0_g1	449	469	460	-24.00	-18.70	0.779166666666667	5	1-17,469-453	18-21,452-449[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAACUUUUUUCUUUUCUUUCU&AGAAAGGAAAGAAAAAAAAUA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a825_TRINITY_DN30291_c0_g1_460_TPlot.pdf
TRINITY_DN30291_c0_g1:462	si_a823	TRINITY_DN30291_c0_g1	451	471	462	-25.50	-19.00	0.745098039215686	6	3-19,469-453	1-2,471-470[UP5];20-21,452-451[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACUUUUUUCUUUUCUUUCUGU&GAAGAAAGGAAAGAAAAAAAA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN30291_c0_g1_462_TPlot.pdf
TRINITY_DN30291_c0_g1:671	si_a409	TRINITY_DN30291_c0_g1	660	680	671	-19.50	-12.70	0.651282051282051	9	1-2,680-679;4-17,677-664	3-3,678-678[SIL];18-21,663-660[UP3]	....((((((((((((((.((&)).))))))))))))))....	UUGCUUAAAUAUGAAUAAUGC&GUUUUGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN30291_c0_g1_671_TPlot.pdf
TRINITY_DN3029_c1_g1:1022	si_a200	TRINITY_DN3029_c1_g1	1005	1031	1022	-29.20	-20.40	0.698630136986301	10	2-15,1030-1017;16-21,1010-1005	1-1,1031-1031[UP5];x-x,1016-1011[BULt]	((((((......((((((((((((((.&.))))))))))))))------))))))	UAGUUGUUUAUUGUUUAUUGGUGAGCG&UGUUCACUAAUAAAU------CGACUA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN3029_c1_g1_1022_TPlot.pdf
TRINITY_DN302_c1_g1:292	si_a544	TRINITY_DN302_c1_g1	281	309	292	-28.90	-18.82	0.65121107266436	22	2-7,308-303;10-21,292-281	1-1,309-309[UP5];8-9,302-293[AILt]	((((((((((((..........((((((.&.))))))--------..))))))))))))	UGAAGAAGUAGAAAAACGUAAGGAACCGG&UCGGUUC--------AAUCUAUUUCUUUA	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN302_c1_g1_292_TPlot.pdf
TRINITY_DN30300_c0_g1:350	si_s199	TRINITY_DN30300_c0_g1	338	359	350	-31.20	-23.30	0.746794871794872	8	1-6,359-354;8-11,352-349;12-21,347-338	7-7,353-353[SIL];x-x,348-348[BULt]	((((((((((.((((.((((((&)))))).))))-))))))))))	GCGACUGGUAUCAUUGCAGGGU&AUUUUGGAAUG-UACCAGUUGU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN30300_c0_g1_350_TPlot.pdf
TRINITY_DN30305_c0_g1:2583	si_a409	TRINITY_DN30305_c0_g1	2572	2592	2583	-19.50	-15.20	0.779487179487179	7.5	3-19,2590-2574	1-2,2592-2591[UP5];20-21,2573-2572[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CAAUUUAGAUAUGAACGAACA&GUUUUGUUUAUAUUUAAAUAA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN30305_c0_g1_2583_TPlot.pdf
TRINITY_DN30305_c0_g1:97	si_a29	TRINITY_DN30305_c0_g1	86	106	97	-31.00	-23.30	0.751612903225806	5.5	1-11,106-96;14-21,93-86	12-13,95-94[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	UACCGGUUGCAGAAUUAAAGA&UUUUUAGUUCUAAGACCGGUA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN30305_c0_g1_97_TPlot.pdf
TRINITY_DN3030_c0_g1:2537	si_s512	TRINITY_DN3030_c0_g1	2526	2546	2537	-24.80	-16.70	0.673387096774194	6	1-10,2546-2537;12-17,2536-2531;18-21,2529-2526	11-11,x-x[BULq];x-x,2530-2530[BULt]	((((.((((((-((((((((((&)))))))))).))))))-))))	UCGAGGUUGAG-AUAUGGGAUU&AAUUCUAUAUUCUUAAU-UCGA	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN3030_c0_g1_2537_TPlot.pdf
TRINITY_DN30313_c0_g1:1344	si_a722	TRINITY_DN30313_c0_g1	1333	1352	1344	-34.70	-22.80	0.657060518731988	12	5-7,1348-1346;9-18,1345-1336	1-4,1352-1349[UP5];8-8,x-x[BULq];19-21,1335-1333[UP3]	...((((((((((-(((....&....))).))))))))))...	UGUGAUGCCCGAG-AACAACA&AAUCGUUACUCGGGCAUCUUU	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN30313_c0_g1_1344_TPlot.pdf
TRINITY_DN30316_c0_g2:189	si_a322	TRINITY_DN30316_c0_g2	178	198	189	-27.00	-18.68	0.691851851851852	8	2-13,197-186;17-21,182-178	1-1,198-198[UP5];14-16,185-183[SIL]	(((((...((((((((((((.&.))))))))))))...)))))	AGGAGCAUGGAAGUCAUGGGC&AUCCAUGAUUUUUUUAUUCCU	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN30316_c0_g2_189_TPlot.pdf
TRINITY_DN3031_c0_g1:372	si_s449	TRINITY_DN3031_c0_g1	361	381	372	-23.60	-16.00	0.677966101694915	9	4-19,378-363	1-3,381-379[UP5];20-21,362-361[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAUGGUUGUUGUUAUGUUUG&UAUAUAUAACAACAAUUAUCU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN3031_c0_g1_372_TPlot.pdf
TRINITY_DN3031_c0_g1:376	si_s445	TRINITY_DN3031_c0_g1	365	385	376	-21.10	-13.90	0.658767772511848	15	8-21,378-365	1-7,385-379[UP5]	((((((((((((((.......&.......))))))))))))))	GGUUGUUGUUAUGUUUGCGUU&AUAUUAUAUAUAACAACAAUU	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN3031_c0_g1_376_TPlot.pdf
TRINITY_DN3031_c0_g1:508	si_a497	TRINITY_DN3031_c0_g1	497	517	508	-32.00	-20.90	0.653125	10.5	2-5,516-513;7-8,511-510;11-19,507-499	1-1,517-517[UP5];6-6,512-512[SIL];9-10,509-508[SIL];20-21,498-497[UP3]	..(((((((((..((.((((.&.)))).))..)))))))))..	UUGGGAGACGGUUAAGGACAA&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3031_c0_g1_508_TPlot.pdf
TRINITY_DN30328_c0_g1:1010	si_a397	TRINITY_DN30328_c0_g1	999	1020	1010	-24.00	-15.60	0.65	10.5	4-9,1017-1012;10-21,1010-999	1-3,1020-1018[UP5];x-x,1011-1011[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AAACAAGACGGUCUCUAUGCUA&GAAUAUAGA-AUUGUUUUGUUU	3	0.999999625720291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN30328_c0_g1_1010_TPlot.pdf
TRINITY_DN3032_c0_g1:1656	si_s611	TRINITY_DN3032_c0_g1	1645	1665	1656	-28.20	-18.36	0.651063829787234	9.5	1-8,1665-1658;13-21,1653-1645	9-12,1657-1654[SIL]	(((((((((....((((((((&))))))))....)))))))))	UUGCUUGGAAAACAAGAAGAU&AUCUUUUUUAAAUCCAAGCGA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN3032_c0_g1_1656_TPlot.pdf
TRINITY_DN3032_c0_g1:1659	si_s608	TRINITY_DN3032_c0_g1	1648	1668	1659	-26.70	-17.66	0.661423220973783	7	2-11,1667-1658;16-21,1653-1648	1-1,1668-1668[UP5];12-15,1657-1654[SIL]	((((((....((((((((((.&.))))))))))....))))))	CUUGGAAAACAAGAAGAUUCC&CGAAUCUUUUUUAAAUCCAAG	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN3032_c0_g1_1659_TPlot.pdf
TRINITY_DN30340_c0_g2:65	si_a494	TRINITY_DN30340_c0_g2	52	74	65	-29.50	-20.90	0.708474576271186	8.5	3-15,72-60;16-21,57-52	1-2,74-73[UP5];x-x,59-58[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	GGAGGCUUGGAGAAUGACAUAAU&AAUAUGUCGUUUUUC--GUCUUC	2	0.995434295473334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN30340_c0_g2_65_TPlot.pdf
TRINITY_DN30343_c0_g2:1568	si_s77	TRINITY_DN30343_c0_g2	1555	1577	1568	-25.50	-17.00	0.666666666666667	10	2-10,1576-1568;11-19,1565-1557	1-1,1577-1577[UP5];x-x,1567-1566[BULt];20-21,1556-1555[UP3]	..(((((((((..(((((((((.&.)))))))))--)))))))))..	GUAGAAAGGAACCGGAAAGAAGC&UUUUUUUUCU--UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN30343_c0_g2_1568_TPlot.pdf
TRINITY_DN30343_c0_g2:1570	si_s75	TRINITY_DN30343_c0_g2	1557	1579	1570	-24.00	-17.00	0.708333333333333	12	4-12,1576-1568;13-21,1565-1557	1-3,1579-1577[UP5];x-x,1567-1566[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	AGAAAGGAACCGGAAAGAAGCCA&UAUUUUUUUUCU--UUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30343_c0_g2_1570_TPlot.pdf
TRINITY_DN30343_c0_g2:875	si_a139	TRINITY_DN30343_c0_g2	864	885	875	-25.90	-17.70	0.683397683397683	9	1-7,885-879;9-18,876-867	8-8,878-877[AILt];19-21,866-864[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AGCCGACGACGAUCAAAUUGCU&AGUAAUU-AAUCGUUGUUGUUU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN30343_c0_g2_875_TPlot.pdf
TRINITY_DN3034_c0_g1:1319	si_a25	TRINITY_DN3034_c0_g1	1308	1329	1319	-26.50	-17.60	0.664150943396226	11	2-9,1328-1321;11-15,1318-1314;17-21,1312-1308	1-1,1329-1329[UP5];10-10,1320-1319[AILt];16-16,1313-1313[SIL]	(((((.(((((..((((((((.&.))))))))-.))))).)))))	GGUCUGAGAGCGAGGGAAUGAU&UUUAUUUUU-AGUUCUAAGACC	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN3034_c0_g1_1319_TPlot.pdf
TRINITY_DN3034_c0_g1:532	si_a497	TRINITY_DN3034_c0_g1	521	540	532	-32.00	-21.80	0.68125	9.5	1-3,540-538;5-8,537-534;11-21,531-521	4-4,x-x[BULq];9-10,533-532[SIL]	(((((((((((..((((-(((&))).))))..)))))))))))	AGGGGAGGCGACCGACG-CGU&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999989966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3034_c0_g1_532_TPlot.pdf
TRINITY_DN3034_c0_g1:533	si_a496	TRINITY_DN3034_c0_g1	522	541	533	-32.40	-21.80	0.67283950617284	10	1-4,541-538;6-9,537-534;12-21,531-522	5-5,x-x[BULq];10-11,533-532[SIL]	((((((((((..((((-((((&)))).))))..))))))))))	GGGGAGGCGACCGACG-CGUG&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999309844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3034_c0_g1_533_TPlot.pdf
TRINITY_DN3034_c0_g1:534	si_a495	TRINITY_DN3034_c0_g1	523	542	534	-31.90	-22.00	0.689655172413793	10	1-5,542-538;7-10,537-534;13-21,531-523	6-6,x-x[BULq];11-12,533-532[SIL]	(((((((((..((((-(((((&))))).))))..)))))))))	GGGAGGCGACCGACG-CGUGU&AUAUGUCGUUUUUCGUCUUCC	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN3034_c0_g1_534_TPlot.pdf
TRINITY_DN3034_c0_g1:535	si_a494	TRINITY_DN3034_c0_g1	524	543	535	-29.50	-19.60	0.664406779661017	9	1-6,543-538;8-11,537-534;14-21,531-524	7-7,x-x[BULq];12-13,533-532[SIL]	((((((((..((((-((((((&)))))).))))..))))))))	GGAGGCGACCGACG-CGUGUU&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999984651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN3034_c0_g1_535_TPlot.pdf
TRINITY_DN3034_c0_g1:536	si_a493	TRINITY_DN3034_c0_g1	525	544	536	-29.50	-20.50	0.694915254237288	8	1-7,544-538;9-12,537-534;15-21,531-525	8-8,x-x[BULq];13-14,533-532[SIL]	(((((((..((((-(((((((&))))))).))))..)))))))	GAGGCGACCGACG-CGUGUUC&GAAUAUGUCGUUUUUCGUCUU	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN3034_c0_g1_536_TPlot.pdf
TRINITY_DN3034_c0_g1:601	si_a67	TRINITY_DN3034_c0_g1	590	610	601	-27.20	-17.68	0.65	7	1-5,610-606;9-15,602-596;17-21,594-590	6-8,605-603[SIL];16-16,595-595[SIL]	(((((.(((((((...(((((&)))))...))))))).)))))	GAAAAUCAAUUUGUCCGAAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.999999999501702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3034_c0_g1_601_TPlot.pdf
TRINITY_DN3034_c0_g1:723	si_a148	TRINITY_DN3034_c0_g1	708	732	723	-30.30	-20.20	0.666666666666667	11	1-14,732-719;15-18,714-711	x-x,718-715[BULt];19-21,710-708[UP3]	...((((....((((((((((((((&))))))))))))))----))))...	UACGCCUUCAAUGGAGCAACGACGA&UCGUUGUUGUUUUA----AGGUCAA	2	0.999596841779756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN3034_c0_g1_723_TPlot.pdf
TRINITY_DN3034_c0_g1:724	si_a147	TRINITY_DN3034_c0_g1	709	733	724	-30.40	-20.20	0.664473684210526	10.5	2-15,732-719;16-19,714-711	1-1,733-733[UP5];x-x,718-715[BULt];20-21,710-709[UP3]	..((((....((((((((((((((.&.))))))))))))))----))))..	ACGCCUUCAAUGGAGCAACGACGAC&AUCGUUGUUGUUUUA----AGGUCA	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN3034_c0_g1_724_TPlot.pdf
TRINITY_DN3034_c0_g1:725	si_a146	TRINITY_DN3034_c0_g1	710	734	725	-29.70	-20.20	0.68013468013468	11.5	3-16,732-719;17-20,714-711	1-2,734-733[UP5];x-x,718-715[BULt];21-21,710-710[UP3]	.((((....((((((((((((((..&..))))))))))))))----)))).	CGCCUUCAAUGGAGCAACGACGACC&AAUCGUUGUUGUUUUA----AGGUC	3	0.999840799792015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN3034_c0_g1_725_TPlot.pdf
TRINITY_DN3034_c0_g1:726	si_a145	TRINITY_DN3034_c0_g1	711	735	726	-28.10	-20.20	0.718861209964413	12	4-17,732-719;18-21,714-711	1-3,735-733[UP5];x-x,718-715[BULt]	((((....((((((((((((((...&...))))))))))))))----))))	GCCUUCAAUGGAGCAACGACGACCA&UAAUCGUUGUUGUUUUA----AGGU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN3034_c0_g1_726_TPlot.pdf
TRINITY_DN3034_c0_g1:727	si_a144	TRINITY_DN3034_c0_g1	712	736	727	-27.40	-18.70	0.682481751824818	13.5	5-18,732-719;19-21,714-712	1-4,736-733[UP5];x-x,718-715[BULt]	(((....((((((((((((((....&....))))))))))))))----)))	CCUUCAAUGGAGCAACGACGACCAC&UUAAUCGUUGUUGUUUUA----AGG	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN3034_c0_g1_727_TPlot.pdf
TRINITY_DN3034_c0_g1:728	si_a143	TRINITY_DN3034_c0_g1	717	737	728	-25.10	-17.10	0.681274900398406	13.5	6-19,732-719	1-5,737-733[UP5];20-21,718-717[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAUGGAGCAACGACGACCACU&AUUAAUCGUUGUUGUUUUAAG	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN3034_c0_g1_728_TPlot.pdf
TRINITY_DN3034_c0_g1:729	si_a142	TRINITY_DN3034_c0_g1	718	738	729	-23.50	-17.10	0.727659574468085	14.5	7-20,732-719	1-6,738-733[UP5];21-21,718-718[UP3]	.((((((((((((((......&......)))))))))))))).	AUGGAGCAACGACGACCACUC&AAUUAAUCGUUGUUGUUUUAA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3034_c0_g1_729_TPlot.pdf
TRINITY_DN30354_c0_g1:501	si_a494	TRINITY_DN30354_c0_g1	490	510	501	-29.50	-21.40	0.725423728813559	14	6-8,505-503;10-21,501-490	1-5,510-506[UP5];9-9,502-502[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GAGGACGAGAGAGGGCCUGAA&AAUAUGUCGUUUUUCGUCUUC	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN30354_c0_g1_501_TPlot.pdf
TRINITY_DN30354_c0_g1:502	si_s893	TRINITY_DN30354_c0_g1	491	511	502	-29.10	-19.10	0.656357388316151	13.5	4-16,508-496	1-3,511-509[UP5];17-21,495-491[UP3]	.....(((((((((((((...&...))))))))))))).....	AGGACGAGAGAGGGCCUGAAG&AAAUAGGCUUUCUCUUCAAUU	4	0.999999997766903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN30354_c0_g1_502_TPlot.pdf
TRINITY_DN30364_c0_g1:69	si_s782	TRINITY_DN30364_c0_g1	57	79	69	-30.70	-21.30	0.693811074918567	4	1-5,79-75;6-18,73-61;19-21,59-57	x-x,74-74[BULt];x-x,60-60[BULt]	(((.(((((((((((((.(((((&)))))-)))))))))))))-)))	ACGUGGUUUGUUUUAUAUGCAAU&AUUGC-UAUAAAACAAGCU-CGU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s782_TRINITY_DN30364_c0_g1_69_TPlot.pdf
TRINITY_DN30365_c0_g1:476	si_s617	TRINITY_DN30365_c0_g1	465	485	476	-28.30	-18.80	0.664310954063604	5.5	1-6,485-480;8-10,478-476;12-21,474-465	7-7,479-479[SIL];11-11,475-475[SIL]	((((((((((.(((.((((((&)))))).))).))))))))))	GGAAGAUUGCCUGGUUUUAAA&UUUAAAUCCAAGCGAUCUUUU	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN30365_c0_g1_476_TPlot.pdf
TRINITY_DN3036_c0_g1:257	si_a192	TRINITY_DN3036_c0_g1	241	266	257	-31.90	-21.30	0.667711598746082	17	1-11,266-256;12-15,250-247	x-x,255-251[BULt];16-21,246-241[UP3]	......((((.....(((((((((((&)))))))))))-----))))......	GCGAACGUGAACGUAGCAGGGAAAGA&UCUUUCCCUGU-----UCACUAAUAA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN3036_c0_g1_257_TPlot.pdf
TRINITY_DN3036_c0_g1:261	si_a188	TRINITY_DN3036_c0_g1	245	270	261	-32.00	-21.30	0.665625	14.5	5-15,266-256;16-19,250-247	1-4,270-267[UP5];x-x,255-251[BULt];20-21,246-245[UP3]	..((((.....(((((((((((....&....)))))))))))-----))))..	ACGUGAACGUAGCAGGGAAAGAAACG&AAUAUCUUUCCCUGU-----UCACUA	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN3036_c0_g1_261_TPlot.pdf
TRINITY_DN3036_c0_g1:262	si_a187	TRINITY_DN3036_c0_g1	246	271	262	-32.00	-21.30	0.665625	15.5	6-16,266-256;17-20,250-247	1-5,271-267[UP5];x-x,255-251[BULt];21-21,246-246[UP3]	.((((.....(((((((((((.....&.....)))))))))))-----)))).	CGUGAACGUAGCAGGGAAAGAAACGA&UAAUAUCUUUCCCUGU-----UCACU	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN3036_c0_g1_262_TPlot.pdf
TRINITY_DN3036_c0_g1:263	si_a186	TRINITY_DN3036_c0_g1	247	272	263	-31.50	-21.00	0.666666666666667	16.5	7-17,266-256;18-21,250-247	1-6,272-267[UP5];x-x,255-251[BULt]	((((.....(((((((((((......&......)))))))))))-----))))	GUGAACGUAGCAGGGAAAGAAACGAU&AUAAUAUCUUUCCCUGU-----UCAC	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN3036_c0_g1_263_TPlot.pdf
TRINITY_DN3036_c0_g1:45	si_s896	TRINITY_DN3036_c0_g1	35	54	45	-31.60	-20.90	0.661392405063291	7.5	3-5,52-50;7-15,48-40;17-21,39-35	1-2,54-53[UP5];6-6,49-49[SIL];16-16,x-x[BULq]	(((((-(((((((((.(((..&..))).))))))))).)))))	UGAAA-UGGAGAGGACGCCAU&UAGGCUUUCUCUUCAAUUUCA	4	0.999996230722476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3036_c0_g1_45_TPlot.pdf
TRINITY_DN3036_c0_g1:603	si_s804	TRINITY_DN3036_c0_g1	591	612	603	-27.90	-20.20	0.724014336917563	7.5	1-10,612-603;11-18,601-594	x-x,602-602[BULt];19-21,593-591[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UUUGGGGUGACUGAAGAUGAAA&UUUUAUCUUC-GUUACCUUUUC	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3036_c0_g1_603_TPlot.pdf
TRINITY_DN3036_c0_g1:604	si_s803	TRINITY_DN3036_c0_g1	592	613	604	-26.00	-21.50	0.826923076923077	6.5	1-11,613-603;12-19,601-594	x-x,602-602[BULt];20-21,593-592[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	UUGGGGUGACUGAAGAUGAAAU&AUUUUAUCUUC-GUUACCUUUU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3036_c0_g1_604_TPlot.pdf
TRINITY_DN3036_c0_g1:608	si_s799	TRINITY_DN3036_c0_g1	596	618	608	-30.00	-21.40	0.713333333333333	6.5	2-4,617-615;5-15,613-603;16-21,601-596	1-1,618-618[UP5];x-x,614-614[BULt];x-x,602-602[BULt]	((((((.(((((((((((.(((.&.)))-)))))))))))-))))))	GGUGACUGAAGAUGAAAUGAUGG&UCGU-AUUUUAUCUUC-GUUACC	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN3036_c0_g1_608_TPlot.pdf
TRINITY_DN30371_c0_g1:936	si_a639	TRINITY_DN30371_c0_g1	925	946	936	-23.60	-15.90	0.673728813559322	9.5	1-6,946-941;7-16,939-930	x-x,940-940[BULt];17-21,929-925[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	AUUGUUUGCUCAAAACGAGUCG&CGAUUU-UUUUGAGUAAUAUAU	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN30371_c0_g1_936_TPlot.pdf
TRINITY_DN30380_c0_g1:2966	si_s39	TRINITY_DN30380_c0_g1	2955	2975	2966	-22.30	-16.40	0.73542600896861	9.5	3-20,2973-2956	1-2,2975-2974[UP5];21-21,2955-2955[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGAUCUGAUUAUUGGGGGUCU&AAAUCUUUAAUAAUUGGAUUU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN30380_c0_g1_2966_TPlot.pdf
TRINITY_DN30380_c0_g1:3458	si_s295	TRINITY_DN30380_c0_g1	3447	3467	3458	-32.20	-21.18	0.657763975155279	8	2-11,3466-3457;15-19,3453-3449	1-1,3467-3467[UP5];12-14,3456-3454[SIL];20-21,3448-3447[UP3]	..(((((...((((((((((.&.))))))))))...)))))..	CGUUCGCCAGUCUAAUCGACC&AGUCGAUUGGAAUUGCGAAAA	2	0.975189943484374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN30380_c0_g1_3458_TPlot.pdf
TRINITY_DN30387_c0_g1:2210	si_a464	TRINITY_DN30387_c0_g1	2199	2219	2210	-19.60	-12.90	0.658163265306122	8	1-10,2219-2210;13-18,2207-2202	11-12,2209-2208[SIL];19-21,2201-2199[UP3]	...((((((..((((((((((&))))))))))..))))))...	UAAAGUUACUGAUUAUAUAUG&UAUAUAUAAUAUGUAAUUAUU	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN30387_c0_g1_2210_TPlot.pdf
TRINITY_DN30387_c0_g1:2211	si_a463	TRINITY_DN30387_c0_g1	2200	2220	2211	-19.70	-12.90	0.654822335025381	7.5	2-11,2219-2210;14-19,2207-2202	1-1,2220-2220[UP5];12-13,2209-2208[SIL];20-21,2201-2200[UP3]	..((((((..((((((((((.&.))))))))))..))))))..	AAAGUUACUGAUUAUAUAUGU&UUAUAUAUAAUAUGUAAUUAU	3	0.999970930827431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN30387_c0_g1_2211_TPlot.pdf
TRINITY_DN30387_c0_g1:568	si_a123	TRINITY_DN30387_c0_g1	558	577	568	-26.60	-17.50	0.657894736842105	6	3-16,575-562;18-19,561-560	1-2,577-576[UP5];17-17,x-x[BULq];20-21,559-558[UP3]	..((-((((((((((((((..&..)))))))))))))).))..	AAAC-AUUGCUAUAAAACAUU&CUUGUUUUAUAGCAAUAGUAA	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN30387_c0_g1_568_TPlot.pdf
TRINITY_DN30387_c0_g1:585	si_a636	TRINITY_DN30387_c0_g1	574	594	585	-26.30	-17.50	0.665399239543726	5.5	1-12,594-583;15-20,580-575	13-14,582-581[SIL];21-21,574-574[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	CAUUGCUAUAAAAAAUUGGCA&UGUCGAUUUUUUUGAGUAAUA	3	0.999999996974839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN30387_c0_g1_585_TPlot.pdf
TRINITY_DN3038_c0_g1:1600	si_s72	TRINITY_DN3038_c0_g1	1589	1609	1600	-24.10	-17.40	0.721991701244813	12	6-21,1604-1589	1-5,1609-1605[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAGAGGAAGAAGAAUCAU&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999999889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3038_c0_g1_1600_TPlot.pdf
TRINITY_DN30395_c0_g1:736	si_s678	TRINITY_DN30395_c0_g1	725	745	736	-25.20	-19.60	0.777777777777778	8	5-21,741-725	1-4,745-742[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUAAACUCAUGUUUUUAGCUU&AUUAUAGAAACAUGAGUUUAA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN30395_c0_g1_736_TPlot.pdf
TRINITY_DN303_c0_g1:2244	si_s317	TRINITY_DN303_c0_g1	2233	2254	2244	-33.10	-22.20	0.670694864048338	8	1-9,2254-2246;10-12,2244-2242;14-19,2240-2235	x-x,2245-2245[BULt];13-13,2241-2241[SIL];20-21,2234-2233[UP3]	..((((((.(((.(((((((((&)))))))))-))).))))))..	GCUUGUAGGGAGAAAGGACGGG&UCUGUCCUU-CUUGUUACAAAC	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN303_c0_g1_2244_TPlot.pdf
TRINITY_DN303_c0_g1:2246	si_s316	TRINITY_DN303_c0_g1	2234	2255	2246	-31.50	-22.60	0.717460317460317	8	2-10,2254-2246;11-13,2244-2242;15-20,2240-2235	1-1,2255-2255[UP5];x-x,2245-2245[BULt];14-14,2241-2241[SIL];21-21,2234-2234[UP3]	.((((((.(((.(((((((((.&.)))))))))-))).)))))).	CUUGUAGGGAGAAAGGACGGGG&UUCUGUCCUU-CUUGUUACAAA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN303_c0_g1_2246_TPlot.pdf
TRINITY_DN303_c0_g1:2247	si_s315	TRINITY_DN303_c0_g1	2235	2256	2247	-31.60	-22.30	0.705696202531646	9	3-11,2254-2246;12-14,2244-2242;16-21,2240-2235	1-2,2256-2255[UP5];x-x,2245-2245[BULt];15-15,2241-2241[SIL]	((((((.(((.(((((((((..&..)))))))))-))).))))))	UUGUAGGGAGAAAGGACGGGGA&AUUCUGUCCUU-CUUGUUACAA	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN303_c0_g1_2247_TPlot.pdf
TRINITY_DN303_c0_g1:2250	si_s79	TRINITY_DN303_c0_g1	2239	2259	2250	-26.20	-19.30	0.736641221374046	11	4-8,2256-2252;10-21,2250-2239	1-3,2259-2257[UP5];9-9,2251-2251[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGGGAGAAAGGACGGGGAUUA&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN303_c0_g1_2250_TPlot.pdf
TRINITY_DN303_c0_g1:2252	si_s77	TRINITY_DN303_c0_g1	2241	2261	2252	-25.50	-17.60	0.690196078431373	14.5	6-10,2256-2252;12-21,2250-2241	1-5,2261-2257[UP5];11-11,2251-2251[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GGAGAAAGGACGGGGAUUAUU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN303_c0_g1_2252_TPlot.pdf
TRINITY_DN303_c0_g1:5571	si_s302	TRINITY_DN303_c0_g1	5559	5581	5571	-32.30	-21.40	0.662538699690402	5	1-7,5581-5575;8-14,5573-5567;16-18,5565-5563;19-21,5561-5559	x-x,5574-5574[BULt];15-15,5566-5566[SIL];x-x,5562-5562[BULt]	(((.(((.(((((((.(((((((&)))))))-))))))).)))-)))	GGCUAGGUUUUUCGCGAAUUCCA&UGGAAUU-GCGAAAAUUCU-GUC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s302_TRINITY_DN303_c0_g1_5571_TPlot.pdf
TRINITY_DN303_c0_g1:7114	si_a412	TRINITY_DN303_c0_g1	7104	7123	7114	-18.30	-11.90	0.650273224043716	9	2-11,7122-7113;13-20,7112-7105	1-1,7123-7123[UP5];12-12,x-x[BULq];21-21,7104-7104[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	AAUUUAUUU-AGUGUAGGCGC&UUGUUUAUAUUUAAAUAAAUA	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN303_c0_g1_7114_TPlot.pdf
TRINITY_DN303_c0_g1:7418	si_a676	TRINITY_DN303_c0_g1	7408	7427	7418	-34.00	-22.10	0.65	5	1-10,7427-7418;12-14,7416-7414;16-21,7413-7408	11-11,7417-7417[SIL];15-15,x-x[BULq]	((((((-(((.((((((((((&)))))))))).))).))))))	GAAACC-CGUUAAUGGGGAAU&AUUCCUUAUUCACGCGGUUUC	2	0.967779006855436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN303_c0_g1_7418_TPlot.pdf
TRINITY_DN303_c3_g1:1810	si_a353	TRINITY_DN303_c3_g1	1798	1819	1810	-24.00	-15.90	0.6625	6	2-15,1818-1805;16-17,1803-1802;19-21,1800-1798	1-1,1819-1819[UP5];x-x,1804-1804[BULt];18-18,1801-1801[SIL]	(((.((.((((((((((((((.&.))))))))))))))-)).)))	CGAACAUAGGUAGAGUUAGUAG&AUAUUAAUUCUAUUU-UGAUCG	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN303_c3_g1_1810_TPlot.pdf
TRINITY_DN30408_c0_g1:1453	si_s71	TRINITY_DN30408_c0_g1	1442	1462	1453	-25.70	-18.86	0.733852140077821	9.5	1-5,1462-1458;10-21,1453-1442	6-9,1457-1454[SIL]	((((((((((((....(((((&)))))....))))))))))))	AGGAAAGAGGAACCAGAGAAG&CUUCUAUUUUUUUUCUUUCCU	4	0.999999995400848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN30408_c0_g1_1453_TPlot.pdf
TRINITY_DN30415_c0_g1:625	si_a75	TRINITY_DN30415_c0_g1	614	634	625	-21.30	-18.70	0.877934272300469	7.5	4-21,631-614	1-3,634-632[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUAAUGAUGAAGAACAGUAAU&CAAAUUGUUUUUCAUUAUUAA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN30415_c0_g1_625_TPlot.pdf
TRINITY_DN30415_c0_g1:627	si_a73	TRINITY_DN30415_c0_g1	616	636	627	-21.90	-16.30	0.744292237442922	11.5	6-21,631-616	1-5,636-632[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUGAUGAAGAACAGUAAUAA&UUCAAAUUGUUUUUCAUUAUU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN30415_c0_g1_627_TPlot.pdf
TRINITY_DN30427_c0_g1:1639	si_s69	TRINITY_DN30427_c0_g1	1628	1651	1639	-23.40	-15.82	0.676068376068376	12.5	2-7,1650-1645;10-21,1639-1628	1-1,1651-1651[UP5];8-9,1644-1640[AILt]	((((((((((((.....((((((.&.))))))---..))))))))))))	GGAGGAAGAAAAUGCUCAGAAGUA&AACUUCU---AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN30427_c0_g1_1639_TPlot.pdf
TRINITY_DN30439_c0_g1:30	si_s431	TRINITY_DN30439_c0_g1	19	39	30	-21.10	-13.80	0.654028436018957	12.5	7-21,33-19	1-6,39-34[UP5]	(((((((((((((((......&......)))))))))))))))	AUAAUGUGUAAUUGUCUAGUU&AUAACAAUAAUUACAUAUUAU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN30439_c0_g1_30_TPlot.pdf
TRINITY_DN3043_c0_g1:562	si_s78	TRINITY_DN3043_c0_g1	551	571	562	-26.20	-18.00	0.687022900763359	13	7-13,565-559;15-21,557-551	1-6,571-566[UP5];14-14,558-558[SIL]	(((((((.(((((((......&......))))))).)))))))	AGAAGAAUGGAAGGAUUAUUC&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3043_c0_g1_562_TPlot.pdf
TRINITY_DN3043_c0_g1:563	si_s77	TRINITY_DN3043_c0_g1	552	572	563	-25.50	-16.80	0.658823529411765	15	8-14,565-559;16-21,557-552	1-7,572-566[UP5];15-15,558-558[SIL]	((((((.(((((((.......&.......))))))).))))))	GAAGAAUGGAAGGAUUAUUCG&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3043_c0_g1_563_TPlot.pdf
TRINITY_DN3043_c0_g1:729	si_s802	TRINITY_DN3043_c0_g1	712	738	729	-26.40	-18.60	0.704545454545455	14.5	2-10,737-729;11-21,722-712	1-1,738-738[UP5];x-x,728-723[BULt]	(((((((((((......(((((((((.&.)))))))))------)))))))))))	GAAGGUGAUGAAAAAGGAGAUAAAAUU&UAUUUUAUCU------UCGUUACCUUU	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3043_c0_g1_729_TPlot.pdf
TRINITY_DN3044_c0_g1:1103	si_a68	TRINITY_DN3044_c0_g1	1090	1112	1103	-25.40	-17.80	0.700787401574803	7.5	1-10,1112-1103;11-13,1100-1098;15-20,1096-1091	x-x,1102-1101[BULt];14-14,1097-1097[SIL];21-21,1090-1090[UP3]	.((((((.(((..((((((((((&))))))))))--))).)))))).	GGAAGAAGAAUCGUUGAAGGAAG&CUUCUUUCAA--AUUGUUUUUCA	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3044_c0_g1_1103_TPlot.pdf
TRINITY_DN3044_c0_g1:1381	si_s617	TRINITY_DN3044_c0_g1	1369	1390	1381	-28.30	-18.70	0.660777385159011	13.5	6-14,1385-1377;15-20,1375-1370	1-5,1390-1386[UP5];x-x,1376-1376[BULt];21-21,1369-1369[UP3]	.((((((.(((((((((.....&.....)))))))))-)))))).	UGAGGGUGCGCUUGGGUCAGCG&UUUAAAUCCAAGCG-AUCUUUU	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN3044_c0_g1_1381_TPlot.pdf
TRINITY_DN3044_c0_g1:1563	si_s812	TRINITY_DN3044_c0_g1	1552	1572	1563	-26.40	-17.40	0.659090909090909	12.5	1-9,1572-1564;11-16,1562-1557	10-10,1563-1563[SIL];17-21,1556-1552[UP3]	.....((((((.(((((((((&))))))))).)))))).....	AGAAGUGAGGGCGGGUGGCGA&UCGUUACCUUUUCUUAAUAAU	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN3044_c0_g1_1563_TPlot.pdf
TRINITY_DN3044_c0_g1:2754	si_a140	TRINITY_DN3044_c0_g1	2743	2764	2754	-25.20	-16.40	0.650793650793651	10.5	1-3,2764-2762;4-7,2760-2757;9-20,2755-2744	x-x,2761-2761[BULt];8-8,2756-2756[SIL];21-21,2743-2743[UP3]	.((((((((((((.((((.(((&)))-)))).)))))))))))).	CGAGCAGCAAUGAGUGGUCUGC&GUA-AUUAAUCGUUGUUGUUUU	2	0.999997668239704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN3044_c0_g1_2754_TPlot.pdf
TRINITY_DN3044_c0_g1:3911	si_s379	TRINITY_DN3044_c0_g1	3900	3922	3911	-42.50	-29.80	0.701176470588235	7.5	1-3,3922-3920;4-8,3918-3914;9-16,3912-3905;19-21,3902-3900	x-x,3919-3919[BULt];x-x,3913-3913[BULt];17-18,3904-3903[SIL]	(((..((((((((.(((((.(((&)))-)))))-))))))))..)))	AUGCCGGGCGGACAACGCGUGGC&GCU-CGCGU-GUCCGCCUUACAU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN3044_c0_g1_3911_TPlot.pdf
TRINITY_DN3044_c0_g1:393	si_a540	TRINITY_DN3044_c0_g1	379	402	393	-34.00	-22.50	0.661764705882353	6	1-14,402-389;15-16,385-384;18-21,382-379	x-x,388-386[BULt];17-17,383-383[SIL]	((((.((...((((((((((((((&))))))))))))))---)).))))	GAAGCGGUGCAUUGAAUCGAUCGC&GCGAUCGGUUCAAU---CUAUUUC	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a540_TRINITY_DN3044_c0_g1_393_TPlot.pdf
TRINITY_DN3044_c0_g1:397	si_a536	TRINITY_DN3044_c0_g1	386	407	397	-38.50	-27.90	0.724675324675325	6	1-3,407-405;4-18,403-389	x-x,404-404[BULt];19-21,388-386[UP3]	...(((((((((((((((.(((&)))-)))))))))))))))...	UGCAUUGAAUCGAUCGCUCCGC&GCG-AGCGAUCGGUUCAAUCUA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a536_TRINITY_DN3044_c0_g1_397_TPlot.pdf
TRINITY_DN30461_c0_g1:834	si_s758	TRINITY_DN30461_c0_g1	823	843	834	-23.50	-15.40	0.65531914893617	16	9-21,835-823	1-8,843-836[UP5]	(((((((((((((........&........)))))))))))))	GAUUAGUCGUUGUAUCUCUAA&UUAAAACAACAACGAUUAAUU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN30461_c0_g1_834_TPlot.pdf
TRINITY_DN30465_c0_g2:288	si_s95	TRINITY_DN30465_c0_g2	277	301	288	-36.30	-25.70	0.707988980716253	10.5	1-9,301-293;10-18,288-280;20-21,278-277	x-x,292-289[BULt];19-19,279-279[SIL]	((.(((((((((....(((((((((&)))))))))----))))))))).))	CUUAUCCGAAGCUACAGAGGAAGAA&UUCUUCUUC----GCUUCGGAUUGG	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN30465_c0_g2_288_TPlot.pdf
TRINITY_DN30465_c0_g2:292	si_s92	TRINITY_DN30465_c0_g2	280	301	292	-34.90	-26.80	0.767908309455587	7	1-10,301-292;13-21,288-280	11-12,291-289[AILt]	(((((((((...((((((((((&))))))))))-..)))))))))	AUCCGAAGCUACAGAGGAAGAA&UUCUUCUUCU-UCGCUUCGGAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN30465_c0_g2_292_TPlot.pdf
TRINITY_DN3046_c0_g1:1414	si_s899	TRINITY_DN3046_c0_g1	1403	1423	1414	-28.30	-22.30	0.787985865724382	6	1-12,1423-1412;14-17,1410-1407	13-13,1411-1411[SIL];18-21,1406-1403[UP3]	....((((.((((((((((((&)))))))))))).))))....	AGUAGAAAAUGAAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3046_c0_g1_1414_TPlot.pdf
TRINITY_DN3046_c0_g1:1415	si_s898	TRINITY_DN3046_c0_g1	1404	1424	1415	-30.70	-22.50	0.732899022801303	6	2-13,1423-1412;15-18,1410-1407	1-1,1424-1424[UP5];14-14,1411-1411[SIL];19-21,1406-1404[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	GUAGAAAAUGAAGAGGAAGCG&GGCUUUCUCUUCAAUUUCAAU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN3046_c0_g1_1415_TPlot.pdf
TRINITY_DN3046_c0_g1:1418	si_s895	TRINITY_DN3046_c0_g1	1407	1427	1418	-31.10	-22.00	0.707395498392283	9	5-16,1423-1412;18-21,1410-1407	1-4,1427-1424[UP5];17-17,1411-1411[SIL]	((((.((((((((((((....&....)))))))))))).))))	GAAAAUGAAGAGGAAGCGGAA&AUAGGCUUUCUCUUCAAUUUC	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3046_c0_g1_1418_TPlot.pdf
TRINITY_DN3046_c0_g1:1419	si_s894	TRINITY_DN3046_c0_g1	1408	1428	1419	-29.10	-19.00	0.652920962199313	14	6-17,1423-1412	1-5,1428-1424[UP5];18-21,1411-1408[UP3]	....((((((((((((.....&.....))))))))))))....	AAAAUGAAGAGGAAGCGGAAG&AAUAGGCUUUCUCUUCAAUUU	2	0.999999507935331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN3046_c0_g1_1419_TPlot.pdf
TRINITY_DN3046_c0_g1:1420	si_s893	TRINITY_DN3046_c0_g1	1409	1429	1420	-29.10	-19.00	0.652920962199313	15	7-18,1423-1412	1-6,1429-1424[UP5];19-21,1411-1409[UP3]	...((((((((((((......&......))))))))))))...	AAAUGAAGAGGAAGCGGAAGC&AAAUAGGCUUUCUCUUCAAUU	2	0.999995814641056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN3046_c0_g1_1420_TPlot.pdf
TRINITY_DN30474_c3_g1:137	si_a393	TRINITY_DN30474_c3_g1	126	147	137	-22.70	-14.90	0.656387665198238	8.5	2-6,146-142;7-17,140-130	1-1,147-147[UP5];x-x,141-141[BULt];18-21,129-126[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	UAAUCAGUUCUGUAUGUCUUAC&UUAAGA-AUAUAGAAUUGUUUU	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN30474_c3_g1_137_TPlot.pdf
TRINITY_DN30474_c3_g1:139	si_a391	TRINITY_DN30474_c3_g1	128	149	139	-22.80	-14.90	0.653508771929825	10.5	4-8,146-142;9-19,140-130	1-3,149-147[UP5];x-x,141-141[BULt];20-21,129-128[UP3]	..(((((((((((.(((((...&...)))))-)))))))))))..	AUCAGUUCUGUAUGUCUUACUC&AAUUAAGA-AUAUAGAAUUGUU	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN30474_c3_g1_139_TPlot.pdf
TRINITY_DN30487_c0_g5:1185	si_s894	TRINITY_DN30487_c0_g5	1174	1194	1185	-29.10	-20.80	0.714776632302406	13.5	5-16,1190-1179	1-4,1194-1191[UP5];17-21,1178-1174[UP3]	.....((((((((((((....&....)))))))))))).....	AGCAGGAGGAGGAAGCCGAGG&AAUAGGCUUUCUCUUCAAUUU	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN30487_c0_g5_1185_TPlot.pdf
TRINITY_DN3048_c0_g1:697	si_s387	TRINITY_DN3048_c0_g1	686	706	697	-39.50	-27.00	0.683544303797468	8	1-10,706-697;13-17,694-690;19-20,688-687	11-12,696-695[SIL];18-18,689-689[SIL];21-21,686-686[UP3]	.((.(((((..((((((((((&))))))))))..))))).)).	CCCAUGGGGGCUGAGGCGGAC&GUCCGCCUUACAUUCCAAGGA	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN3048_c0_g1_697_TPlot.pdf
TRINITY_DN3048_c0_g1:699	si_s385	TRINITY_DN3048_c0_g1	688	708	699	-38.60	-27.20	0.704663212435233	7	1-12,708-697;15-19,694-690	13-14,696-695[SIL];20-21,689-688[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	CAUGGGGGCUGAGGCGGACGC&GUGUCCGCCUUACAUUCCAAG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s385_TRINITY_DN3048_c0_g1_699_TPlot.pdf
TRINITY_DN3048_c0_g1:700	si_s384	TRINITY_DN3048_c0_g1	689	709	700	-38.50	-27.60	0.716883116883117	7	2-13,708-697;16-20,694-690	1-1,709-709[UP5];14-15,696-695[SIL];21-21,689-689[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	AUGGGGGCUGAGGCGGACGCU&CGUGUCCGCCUUACAUUCCAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN3048_c0_g1_700_TPlot.pdf
TRINITY_DN3048_c0_g1:701	si_s383	TRINITY_DN3048_c0_g1	690	710	701	-40.90	-27.40	0.669926650366748	7.5	3-14,708-697;17-21,694-690	1-2,710-709[UP5];15-16,696-695[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	UGGGGGCUGAGGCGGACGCUC&GCGUGUCCGCCUUACAUUCCA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s383_TRINITY_DN3048_c0_g1_701_TPlot.pdf
TRINITY_DN304_c0_g1:1271	si_s83	TRINITY_DN304_c0_g1	1260	1278	1271	-30.90	-20.40	0.660194174757282	7.5	1-7,1278-1272;11-21,1270-1260	8-10,1271-1271[AILq]	(((((((((((.--(((((((&)))))))...)))))))))))	GAGGAGGAAGAU--GAAAGAG&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN304_c0_g1_1271_TPlot.pdf
TRINITY_DN304_c0_g1:2175	si_a337	TRINITY_DN304_c0_g1	2164	2184	2175	-30.80	-22.30	0.724025974025974	10	2-13,2183-2172	1-1,2184-2184[UP5];14-21,2171-2164[UP3]	........((((((((((((.&.))))))))))))........	AUGCCAGACGGGACGAGGAAA&AUUCCUUGUCCCGAAAAUAUU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN304_c0_g1_2175_TPlot.pdf
TRINITY_DN30522_c0_g1:206	si_s87	TRINITY_DN30522_c0_g1	193	216	206	-32.90	-23.70	0.720364741641337	7	1-7,216-210;8-17,208-199;18-20,196-194	x-x,209-209[BULt];x-x,198-197[BULt];21-21,193-193[UP3]	.(((..((((((((((.(((((((&)))))))-))))))))))--))).	CGGCUUGAAGGAGAAGUAGAGGAA&UUCCUUU-CUUCUUCUUC--GCUU	4	0.999999786133772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN30522_c0_g1_206_TPlot.pdf
TRINITY_DN30526_c0_g1:506	si_a568	TRINITY_DN30526_c0_g1	495	515	506	-36.20	-24.50	0.676795580110497	9.5	1-6,515-510;9-15,507-501;17-19,499-497	7-8,509-508[SIL];16-16,500-500[SIL];20-21,496-495[UP3]	..(((.(((((((..((((((&))))))..))))))).)))..	GAGAAGGUGCGAUCGGCGGGG&CCCCGUGAAUCGUAUGUUUGU	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a568_TRINITY_DN30526_c0_g1_506_TPlot.pdf
TRINITY_DN30529_c1_g1:188	si_a9	TRINITY_DN30529_c1_g1	177	197	188	-29.60	-20.20	0.682432432432432	8	1-3,197-195;6-19,192-179	4-5,194-193[SIL];20-21,178-177[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	CGGAGUAGGCUUUUUCACCAA&UUGAAGAGAAAGCCUAUUUAU	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN30529_c1_g1_188_TPlot.pdf
TRINITY_DN30538_c0_g2:178	si_a153	TRINITY_DN30538_c0_g2	166	186	178	-28.70	-20.00	0.696864111498258	7	1-7,186-180;9-13,179-175;14-19,173-168	8-8,x-x[BULq];x-x,174-174[BULt];20-21,167-166[UP3]	..((((((.(((((-(((((((&))))))).)))))-))))))..	CAAGAUUGCACCUU-GAACGAC&GUUGUUUUAAGGU-CAAUCUAU	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN30538_c0_g2_178_TPlot.pdf
TRINITY_DN3053_c0_g1:1629	si_a74	TRINITY_DN3053_c0_g1	1618	1639	1629	-22.20	-15.60	0.702702702702703	8.5	1-5,1639-1635;7-20,1632-1619	6-6,1634-1633[AILt];21-21,1618-1618[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	GAAUAGUGGAGAACGCUUUUGG&UCAAA-UUGUUUUUCAUUAUUA	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN3053_c0_g1_1629_TPlot.pdf
TRINITY_DN3053_c0_g1:1630	si_a73	TRINITY_DN3053_c0_g1	1619	1640	1630	-21.90	-15.20	0.694063926940639	9	2-6,1639-1635;8-21,1632-1619	1-1,1640-1640[UP5];7-7,1634-1633[AILt]	((((((((((((((..(((((.&.)))))-.))))))))))))))	AAUAGUGGAGAACGCUUUUGGU&UUCAAA-UUGUUUUUCAUUAUU	3	0.999999855462075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN3053_c0_g1_1630_TPlot.pdf
TRINITY_DN3053_c0_g1:1631	si_a72	TRINITY_DN3053_c0_g1	1620	1641	1631	-21.90	-14.30	0.65296803652968	10.5	3-7,1639-1635;9-21,1632-1620	1-2,1641-1640[UP5];8-8,1634-1633[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	AUAGUGGAGAACGCUUUUGGUA&UUUCAAA-UUGUUUUUCAUUAU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN3053_c0_g1_1631_TPlot.pdf
TRINITY_DN3055_c2_g1:1226	si_a319	TRINITY_DN3055_c2_g1	1216	1235	1226	-22.40	-15.20	0.678571428571429	8	3-13,1233-1223;16-21,1221-1216	1-2,1235-1234[UP5];14-15,1222-1222[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	GGUAGGU-AGUCAUGGAUACG&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999985793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3055_c2_g1_1226_TPlot.pdf
TRINITY_DN30564_c0_g1:251	si_a817	TRINITY_DN30564_c0_g1	240	260	251	-30.90	-22.70	0.73462783171521	5.5	1-16,260-245	17-21,244-240[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAAUCUUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	1	0.018068073421014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN30564_c0_g1_251_TPlot.pdf
TRINITY_DN30567_c0_g2:169	si_a72	TRINITY_DN30567_c0_g2	158	178	169	-21.90	-14.30	0.65296803652968	10	1-6,178-173;8-18,171-161	7-7,172-172[SIL];19-21,160-158[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	GAUGUGGAAAGCGAAUUGGGA&UUUCAAAUUGUUUUUCAUUAU	2	0.999999999352856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN30567_c0_g2_169_TPlot.pdf
TRINITY_DN30567_c0_g2:206	si_a328	TRINITY_DN30567_c0_g2	195	216	206	-30.10	-20.32	0.675083056478405	11.5	1-8,216-209;12-20,204-196	9-11,208-205[AILt];21-21,195-195[UP3]	.(((((((((....((((((((&))))))))-...))))))))).	UGGACGAGGAUUUCAAGAAGUC&GAUUUUUU-UAUUCCUUGUCCC	4	0.999985278941187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN30567_c0_g2_206_TPlot.pdf
TRINITY_DN3057_c0_g1:4197	si_s73	TRINITY_DN3057_c0_g1	4186	4205	4197	-24.00	-17.50	0.729166666666667	8	1-4,4205-4202;7-19,4200-4188	5-6,4201-4201[AILq];20-21,4187-4186[UP3]	..(((((((((((((.-((((&))))..)))))))))))))..	ACAGGAAAGAAGAAAU-UGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999998563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3057_c0_g1_4197_TPlot.pdf
TRINITY_DN3057_c0_g1:4198	si_s72	TRINITY_DN3057_c0_g1	4187	4206	4198	-24.10	-17.90	0.742738589211618	7.5	1-5,4206-4202;8-20,4200-4188	6-7,4201-4201[AILq];21-21,4187-4187[UP3]	.(((((((((((((.-(((((&)))))..))))))))))))).	CAGGAAAGAAGAAAU-UGGAG&UUCUAUUUUUUUUCUUUCCUU	3	0.999999998831755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3057_c0_g1_4198_TPlot.pdf
TRINITY_DN3057_c0_g1:4199	si_s71	TRINITY_DN3057_c0_g1	4188	4207	4199	-25.70	-21.30	0.828793774319066	7	1-6,4207-4202;9-21,4200-4188	7-8,4201-4201[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	AGGAAAGAAGAAAU-UGGAGG&CUUCUAUUUUUUUUCUUUCCU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3057_c0_g1_4199_TPlot.pdf
TRINITY_DN3057_c0_g1:4200	si_s70	TRINITY_DN3057_c0_g1	4189	4208	4200	-25.80	-20.30	0.786821705426357	7.5	2-7,4207-4202;10-21,4200-4189	1-1,4208-4208[UP5];8-9,4201-4201[AILq]	((((((((((((.-((((((.&.))))))..))))))))))))	GGAAAGAAGAAAU-UGGAGGG&ACUUCUAUUUUUUUUCUUUCC	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3057_c0_g1_4200_TPlot.pdf
TRINITY_DN3057_c0_g1:4201	si_s69	TRINITY_DN3057_c0_g1	4190	4209	4201	-23.40	-17.00	0.726495726495727	9.5	3-8,4207-4202;11-21,4200-4190	1-2,4209-4208[UP5];9-10,4201-4201[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	GAAAGAAGAAAU-UGGAGGGA&AACUUCUAUUUUUUUUCUUUC	2	0.999999868459029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3057_c0_g1_4201_TPlot.pdf
TRINITY_DN3057_c0_g1:4204	si_s899	TRINITY_DN3057_c0_g1	4193	4215	4204	-28.30	-18.90	0.667844522968198	13	1-3,4215-4213;5-17,4209-4197	4-4,4212-4210[AILt];18-21,4196-4193[UP3]	....(((((((((((((...(((&)))--.)))))))))))))....	AGAAGAAAUUGGAGGGAUCUGGC&GCU--UUCUCUUCAAUUUCAAUU	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3057_c0_g1_4204_TPlot.pdf
TRINITY_DN3057_c1_g1:2120	si_s609	TRINITY_DN3057_c1_g1	2109	2130	2120	-27.70	-19.70	0.711191335740072	6.5	3-5,2128-2126;6-21,2124-2109	1-2,2130-2129[UP5];x-x,2125-2125[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	GUUUGGAUUUAAAAGAUGAUGC&GAAUC-UUUUUUAAAUCCAAGC	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN3057_c1_g1_2120_TPlot.pdf
TRINITY_DN3057_c1_g1:2978	si_s820	TRINITY_DN3057_c1_g1	2967	2987	2978	-22.10	-14.90	0.67420814479638	4	1-7,2987-2981;9-19,2979-2969	8-8,2980-2980[SIL];20-21,2968-2967[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GUUUUUUCAUUAUAAAGAAAA&UUUUCUUAAUAAUGAAAAACA	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN3057_c1_g1_2978_TPlot.pdf
TRINITY_DN3057_c1_g1:2979	si_s819	TRINITY_DN3057_c1_g1	2968	2988	2979	-23.00	-15.10	0.656521739130435	4	2-8,2987-2981;10-20,2979-2969	1-1,2988-2988[UP5];9-9,2980-2980[SIL];21-21,2968-2968[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UUUUUUCAUUAUAAAGAAAAU&CUUUUCUUAAUAAUGAAAAAC	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN3057_c1_g1_2979_TPlot.pdf
TRINITY_DN3057_c1_g1:3003	si_a783	TRINITY_DN3057_c1_g1	2992	3011	3003	-24.70	-16.10	0.651821862348178	10	2-9,3010-3003;11-19,3002-2994	1-1,3011-3011[UP5];10-10,x-x[BULq];20-21,2993-2992[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	AUGUAGGGGAG-AGAGGGGUA&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3057_c1_g1_3003_TPlot.pdf
TRINITY_DN3058_c0_g2:3527	si_a895	TRINITY_DN3058_c0_g2	3516	3535	3527	-21.70	-16.10	0.741935483870968	6	1-7,3535-3529;11-21,3526-3516	8-10,3528-3527[AILq]	(((((((((((..-(((((((&)))))))...)))))))))))	UAUAUUACUUAGU-UUACUAU&AUAGUAAUAAUAAGUAAUAUA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN3058_c0_g2_3527_TPlot.pdf
TRINITY_DN3058_c0_g2:3528	si_a894	TRINITY_DN3058_c0_g2	3517	3536	3528	-21.70	-15.50	0.714285714285714	6.5	1-8,3536-3529;12-21,3526-3517	9-11,3528-3527[AILq]	((((((((((..-((((((((&))))))))...))))))))))	AUAUUACUUAGU-UUACUAUG&UAUAGUAAUAAUAAGUAAUAU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN3058_c0_g2_3528_TPlot.pdf
TRINITY_DN3058_c0_g2:4366	si_s258	TRINITY_DN3058_c0_g2	4355	4374	4366	-25.90	-17.20	0.664092664092664	5	2-5,4373-4370;7-19,4369-4357	1-1,4374-4374[UP5];6-6,x-x[BULq];20-21,4356-4355[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	GAUUUUUGAGUAAUA-AUCGU&CCGAUAUAUUACUCAAAAAAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s258_TRINITY_DN3058_c0_g2_4366_TPlot.pdf
TRINITY_DN3058_c0_g2:4551	si_s119	TRINITY_DN3058_c0_g2	4537	4560	4551	-27.40	-18.74	0.683941605839416	10	1-10,4560-4551;12-21,4546-4537	11-11,4550-4547[AILt]	((((((((((....((((((((((&))))))))))---.))))))))))	UUAGCUCUUCAUCAAUUUUUCUGU&AUAGAAAAAU---AGAAGAGUUGA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN3058_c0_g2_4551_TPlot.pdf
TRINITY_DN3058_c0_g2:4553	si_s117	TRINITY_DN3058_c0_g2	4539	4562	4553	-24.70	-16.64	0.673684210526316	11.5	3-12,4560-4551;14-21,4546-4539	1-2,4562-4561[UP5];13-13,4550-4547[AILt]	((((((((....((((((((((..&..))))))))))---.))))))))	AGCUCUUCAUCAAUUUUUCUGUGG&AAAUAGAAAAAU---AGAAGAGUU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN3058_c0_g2_4553_TPlot.pdf
TRINITY_DN3058_c0_g2:4710	si_s801	TRINITY_DN3058_c0_g2	4699	4719	4710	-28.20	-20.50	0.726950354609929	5	1-15,4719-4705;17-18,4703-4702	16-16,4704-4704[SIL];19-21,4701-4699[UP3]	...((.(((((((((((((((&))))))))))))))).))...	AUUGUCACGAAGAUAAAAUGC&GUAUUUUAUCUUCGUUACCUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN3058_c0_g2_4710_TPlot.pdf
TRINITY_DN3058_c0_g2:4711	si_s800	TRINITY_DN3058_c0_g2	4700	4720	4711	-29.70	-20.60	0.693602693602694	5	2-16,4719-4705;18-19,4703-4702	1-1,4720-4720[UP5];17-17,4704-4704[SIL];20-21,4701-4700[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	UUGUCACGAAGAUAAAAUGCA&CGUAUUUUAUCUUCGUUACCU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN3058_c0_g2_4711_TPlot.pdf
TRINITY_DN3058_c0_g2:4712	si_s799	TRINITY_DN3058_c0_g2	4701	4721	4712	-30.00	-20.60	0.686666666666667	6	3-17,4719-4705;19-20,4703-4702	1-2,4721-4720[UP5];18-18,4704-4704[SIL];21-21,4701-4701[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	UGUCACGAAGAUAAAAUGCAC&UCGUAUUUUAUCUUCGUUACC	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN3058_c0_g2_4712_TPlot.pdf
TRINITY_DN3058_c0_g2:4713	si_s798	TRINITY_DN3058_c0_g2	4702	4722	4713	-29.30	-20.60	0.703071672354949	7	4-18,4719-4705;20-21,4703-4702	1-3,4722-4720[UP5];19-19,4704-4704[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GUCACGAAGAUAAAAUGCACA&CUCGUAUUUUAUCUUCGUUAC	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN3058_c0_g2_4713_TPlot.pdf
TRINITY_DN3058_c0_g2:4714	si_s797	TRINITY_DN3058_c0_g2	4703	4723	4714	-30.00	-19.60	0.653333333333333	10	5-19,4719-4705	1-4,4723-4720[UP5];20-21,4704-4703[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCACGAAGAUAAAAUGCACAA&GCUCGUAUUUUAUCUUCGUUA	2	0.999996817149449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3058_c0_g2_4714_TPlot.pdf
TRINITY_DN3058_c0_g2:7287	si_a93	TRINITY_DN3058_c0_g2	7276	7296	7287	-28.90	-19.00	0.657439446366782	8	4-20,7293-7277	1-3,7296-7294[UP5];21-21,7276-7276[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GAUUUUUGUUACUUUUUCACU&UAAGAAAAGGUAACGAAGAUA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a93_TRINITY_DN3058_c0_g2_7287_TPlot.pdf
TRINITY_DN3058_c0_g2:7288	si_a92	TRINITY_DN3058_c0_g2	7277	7297	7288	-28.60	-18.60	0.65034965034965	9	5-21,7293-7277	1-4,7297-7294[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUUUUUGUUACUUUUUCACUG&UUAAGAAAAGGUAACGAAGAU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN3058_c0_g2_7288_TPlot.pdf
TRINITY_DN30592_c0_g2:3700	si_a187	TRINITY_DN30592_c0_g2	3689	3709	3700	-32.00	-20.80	0.65	10	4-17,3706-3693	1-3,3709-3707[UP5];18-21,3692-3689[UP3]	....((((((((((((((...&...))))))))))))))....	GAUCAACAGGGAAAGAUGCAU&UAAUAUCUUUCCCUGUUCACU	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN30592_c0_g2_3700_TPlot.pdf
TRINITY_DN30592_c0_g2:3702	si_a185	TRINITY_DN30592_c0_g2	3691	3711	3702	-31.70	-20.80	0.65615141955836	12	6-19,3706-3693	1-5,3711-3707[UP5];20-21,3692-3691[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCAACAGGGAAAGAUGCAUGG&GAUAAUAUCUUUCCCUGUUCA	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN30592_c0_g2_3702_TPlot.pdf
TRINITY_DN30592_c0_g2:3995	si_s77	TRINITY_DN30592_c0_g2	3984	4004	3995	-25.50	-16.70	0.654901960784314	4	1-13,4004-3992;15-20,3990-3985	14-14,3991-3991[SIL];21-21,3984-3984[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AAGGAAAAGAAAGAGAAAAAG&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN30592_c0_g2_3995_TPlot.pdf
TRINITY_DN30592_c0_g2:3997	si_s75	TRINITY_DN30592_c0_g2	3986	4006	3997	-24.00	-15.90	0.6625	6.5	3-15,4004-3992;17-21,3990-3986	1-2,4006-4005[UP5];16-16,3991-3991[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GGAAAAGAAAGAGAAAAAGGA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30592_c0_g2_3997_TPlot.pdf
TRINITY_DN30592_c0_g2:4021	si_s312	TRINITY_DN30592_c0_g2	4010	4031	4021	-29.00	-19.20	0.662068965517241	12.5	5-8,4027-4024;10-20,4021-4011	1-4,4031-4028[UP5];9-9,4023-4022[AILt];21-21,4010-4010[UP3]	.(((((((((((..((((....&....))))-.))))))))))).	AGACAAGAAGGAAAAGAAGGAU&AAAAUUCU-GUCCUUCUUGUUA	3	0.999999999996771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN30592_c0_g2_4021_TPlot.pdf
TRINITY_DN30592_c0_g2:4053	si_s76	TRINITY_DN30592_c0_g2	4042	4062	4053	-23.60	-17.90	0.758474576271186	8.5	3-7,4060-4056;9-19,4054-4044	1-2,4062-4061[UP5];8-8,4055-4055[SIL];20-21,4043-4042[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	AUGAGAGGAAAGAUAAAGACA&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN30592_c0_g2_4053_TPlot.pdf
TRINITY_DN30592_c0_g2:4054	si_s75	TRINITY_DN30592_c0_g2	4043	4063	4054	-24.00	-17.90	0.745833333333333	9.5	4-8,4060-4056;10-20,4054-4044	1-3,4063-4061[UP5];9-9,4055-4055[SIL];21-21,4043-4043[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	UGAGAGGAAAGAUAAAGACAA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999988671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30592_c0_g2_4054_TPlot.pdf
TRINITY_DN30592_c0_g2:4055	si_s74	TRINITY_DN30592_c0_g2	4044	4064	4055	-25.00	-17.90	0.716	7.5	1-2,4064-4063;5-9,4060-4056;11-21,4054-4044	3-4,4062-4061[SIL];10-10,4055-4055[SIL]	(((((((((((.(((((..((&))..))))).)))))))))))	GAGAGGAAAGAUAAAGACAAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999992288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN30592_c0_g2_4055_TPlot.pdf
TRINITY_DN30592_c0_g2:4056	si_s73	TRINITY_DN30592_c0_g2	4045	4065	4056	-24.00	-16.50	0.6875	7.5	1-3,4065-4063;6-10,4060-4056;12-21,4054-4045	4-5,4062-4061[SIL];11-11,4055-4055[SIL]	((((((((((.(((((..(((&)))..))))).))))))))))	AGAGGAAAGAUAAAGACAAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN30592_c0_g2_4056_TPlot.pdf
TRINITY_DN30592_c0_g2:4057	si_s72	TRINITY_DN30592_c0_g2	4046	4066	4057	-24.10	-16.60	0.688796680497925	7.5	1-4,4066-4063;7-11,4060-4056;13-21,4054-4046	5-6,4062-4061[SIL];12-12,4055-4055[SIL]	(((((((((.(((((..((((&))))..))))).)))))))))	GAGGAAAGAUAAAGACAAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN30592_c0_g2_4057_TPlot.pdf
TRINITY_DN30592_c0_g2:4058	si_s71	TRINITY_DN30592_c0_g2	4047	4067	4058	-25.70	-18.70	0.727626459143969	6	1-5,4067-4063;8-12,4060-4056;14-21,4054-4047	6-7,4062-4061[SIL];13-13,4055-4055[SIL]	((((((((.(((((..(((((&)))))..))))).))))))))	AGGAAAGAUAAAGACAAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999137702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN30592_c0_g2_4058_TPlot.pdf
TRINITY_DN30592_c0_g2:4059	si_s70	TRINITY_DN30592_c0_g2	4048	4068	4059	-25.80	-17.60	0.682170542635659	7	2-6,4067-4063;9-13,4060-4056;15-21,4054-4048	1-1,4068-4068[UP5];7-8,4062-4061[SIL];14-14,4055-4055[SIL]	(((((((.(((((..(((((.&.)))))..))))).)))))))	GGAAAGAUAAAGACAAGAAGG&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN30592_c0_g2_4059_TPlot.pdf
TRINITY_DN30592_c0_g2:4074	si_s84	TRINITY_DN30592_c0_g2	4063	4089	4074	-32.30	-21.40	0.662538699690402	14.5	1-4,4089-4086;5-8,4084-4081;9-20,4075-4064	x-x,4085-4085[BULt];x-x,4080-4076[BULt];21-21,4063-4063[UP3]	.((((((((((((.....((((.((((&))))-))))-----)))))))))))).	AGAAGGAGAAGGAUAAAAAGGACAAGA&UCUU-UCCU-----UUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN30592_c0_g2_4074_TPlot.pdf
TRINITY_DN30592_c0_g2:4075	si_s83	TRINITY_DN30592_c0_g2	4064	4090	4075	-30.90	-21.90	0.70873786407767	13.5	1-5,4090-4086;6-9,4084-4081;10-21,4075-4064	x-x,4085-4085[BULt];x-x,4080-4076[BULt]	((((((((((((.....((((.(((((&)))))-))))-----))))))))))))	GAAGGAGAAGGAUAAAAAGGACAAGAA&UUCUU-UCCU-----UUCUUCUUCUUC	3	0.999999999999851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN30592_c0_g2_4075_TPlot.pdf
TRINITY_DN30592_c0_g2:4084	si_s79	TRINITY_DN30592_c0_g2	4068	4094	4084	-26.20	-17.50	0.66793893129771	10	1-9,4094-4086;10-13,4084-4081;14-21,4075-4068	x-x,4085-4085[BULt];x-x,4080-4076[BULt]	((((((((.....((((.(((((((((&)))))))))-))))-----))))))))	GAGAAGGAUAAAAAGGACAAGAAAGGA&UUUUUUCUU-UCCU-----UUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN30592_c0_g2_4084_TPlot.pdf
TRINITY_DN30592_c0_g2:4644	si_a759	TRINITY_DN30592_c0_g2	4633	4653	4644	-32.60	-21.40	0.656441717791411	8	1-10,4653-4644;12-16,4642-4638;19-20,4635-4634	11-11,4643-4643[SIL];17-18,4637-4636[SIL];21-21,4633-4633[UP3]	.((..(((((.((((((((((&)))))))))).)))))..)).	ACAGGCAAAAUUCCGGAGGAG&CUCCUUUGGGUUUUUGAUUGA	3	0.999999940687976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN30592_c0_g2_4644_TPlot.pdf
TRINITY_DN3059_c0_g1:5752	si_a498	TRINITY_DN3059_c0_g1	5741	5760	5752	-33.50	-22.40	0.66865671641791	7	1-4,5760-5757;6-19,5756-5743	5-5,x-x[BULq];20-21,5742-5741[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	GUGGGAAGGCGAAAGA-GAUA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999999968188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3059_c0_g1_5752_TPlot.pdf
TRINITY_DN3059_c0_g2:490	si_a406	TRINITY_DN3059_c0_g2	478	499	490	-19.80	-14.40	0.727272727272727	8	2-14,498-486;15-20,484-479	1-1,499-499[UP5];x-x,485-485[BULt];21-21,478-478[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	CUUGGAUCAUGGGCAAAGCAAC&AUUGUUUUGUUUAU-AUUUAAA	4	0.999999822393667	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3059_c0_g2_490_TPlot.pdf
TRINITY_DN3059_c0_g2:815	si_s898	TRINITY_DN3059_c0_g2	804	824	815	-30.70	-21.10	0.687296416938111	10	1-12,824-813	13-21,812-804[UP3]	.........((((((((((((&)))))))))))).........	GUCAAUGGGGAAGAGGAAGCC&GGCUUUCUCUUCAAUUUCAAU	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN3059_c0_g2_815_TPlot.pdf
TRINITY_DN3059_c0_g2:816	si_s897	TRINITY_DN3059_c0_g2	805	825	816	-31.30	-21.20	0.677316293929712	10	2-13,824-813	1-1,825-825[UP5];14-21,812-805[UP3]	........((((((((((((.&.))))))))))))........	UCAAUGGGGAAGAGGAAGCCA&AGGCUUUCUCUUCAAUUUCAA	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN3059_c0_g2_816_TPlot.pdf
TRINITY_DN3059_c0_g2:818	si_s895	TRINITY_DN3059_c0_g2	807	827	818	-31.10	-21.20	0.681672025723473	12	4-15,824-813	1-3,827-825[UP5];16-21,812-807[UP3]	......((((((((((((...&...))))))))))))......	AAUGGGGAAGAGGAAGCCAUU&AUAGGCUUUCUCUUCAAUUUC	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3059_c0_g2_818_TPlot.pdf
TRINITY_DN3059_c0_g2:821	si_s892	TRINITY_DN3059_c0_g2	810	830	821	-29.50	-21.20	0.71864406779661	15	7-18,824-813	1-6,830-825[UP5];19-21,812-810[UP3]	...((((((((((((......&......))))))))))))...	GGGGAAGAGGAAGCCAUUACA&UAAAUAGGCUUUCUCUUCAAU	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN3059_c0_g2_821_TPlot.pdf
TRINITY_DN3059_c0_g2:822	si_s891	TRINITY_DN3059_c0_g2	811	831	822	-29.60	-21.20	0.716216216216216	15.5	8-19,824-813	1-7,831-825[UP5];20-21,812-811[UP3]	..((((((((((((.......&.......))))))))))))..	GGGAAGAGGAAGCCAUUACAA&AUAAAUAGGCUUUCUCUUCAA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN3059_c0_g2_822_TPlot.pdf
TRINITY_DN3059_c0_g2:823	si_s890	TRINITY_DN3059_c0_g2	812	832	823	-29.50	-21.20	0.71864406779661	16.5	9-20,824-813	1-8,832-825[UP5];21-21,812-812[UP3]	.((((((((((((........&........)))))))))))).	GGAAGAGGAAGCCAUUACAAU&AAUAAAUAGGCUUUCUCUUCA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN3059_c0_g2_823_TPlot.pdf
TRINITY_DN3059_c0_g2:824	si_s889	TRINITY_DN3059_c0_g2	813	833	824	-28.80	-20.80	0.722222222222222	17.5	10-21,824-813	1-9,833-825[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGGAAGCCAUUACAAUG&AAAUAAAUAGGCUUUCUCUUC	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3059_c0_g2_824_TPlot.pdf
TRINITY_DN3059_c0_g2:938	si_a226	TRINITY_DN3059_c0_g2	927	947	938	-27.60	-22.60	0.818840579710145	5	1-14,947-934;16-19,932-929	15-15,933-933[SIL];20-21,928-927[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GAUGAUGAUGGAGACAUGAGU&ACUCAUGUUUCUAUAAUCAAU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN3059_c0_g2_938_TPlot.pdf
TRINITY_DN3059_c0_g2:940	si_a224	TRINITY_DN3059_c0_g2	929	949	940	-27.40	-22.60	0.824817518248175	5.5	3-16,947-934;18-21,932-929	1-2,949-948[UP5];17-17,933-933[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UGAUGAUGGAGACAUGAGUCC&AAACUCAUGUUUCUAUAAUCA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN3059_c0_g2_940_TPlot.pdf
TRINITY_DN3059_c0_g2:942	si_a222	TRINITY_DN3059_c0_g2	931	951	942	-25.20	-19.40	0.76984126984127	11	5-18,947-934	1-4,951-948[UP5];19-21,933-931[UP3]	...((((((((((((((....&....))))))))))))))...	AUGAUGGAGACAUGAGUCCGA&UUAAACUCAUGUUUCUAUAAU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN3059_c0_g2_942_TPlot.pdf
TRINITY_DN3059_c0_g2:943	si_a221	TRINITY_DN3059_c0_g2	932	952	943	-25.20	-19.60	0.777777777777778	8	1-3,952-950;6-19,947-934	4-5,949-948[SIL];20-21,933-932[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	UGAUGGAGACAUGAGUCCGAU&AUUAAACUCAUGUUUCUAUAA	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN3059_c0_g2_943_TPlot.pdf
TRINITY_DN3059_c0_g2:944	si_a220	TRINITY_DN3059_c0_g2	933	953	944	-25.10	-19.90	0.792828685258964	8	2-4,952-950;7-20,947-934	1-1,953-953[UP5];5-6,949-948[SIL];21-21,933-933[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	GAUGGAGACAUGAGUCCGAUG&AAUUAAACUCAUGUUUCUAUA	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN3059_c0_g2_944_TPlot.pdf
TRINITY_DN3059_c0_g2:945	si_a219	TRINITY_DN3059_c0_g2	934	954	945	-25.10	-19.50	0.776892430278884	9	3-5,952-950;8-21,947-934	1-2,954-953[UP5];6-7,949-948[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	AUGGAGACAUGAGUCCGAUGG&UAAUUAAACUCAUGUUUCUAU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN3059_c0_g2_945_TPlot.pdf
TRINITY_DN3059_c0_g2:946	si_a218	TRINITY_DN3059_c0_g2	935	955	946	-26.60	-18.30	0.68796992481203	11	4-6,952-950;9-21,947-935	1-3,955-953[UP5];7-8,949-948[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	UGGAGACAUGAGUCCGAUGGC&CUAAUUAAACUCAUGUUUCUA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN3059_c0_g2_946_TPlot.pdf
TRINITY_DN3059_c0_g2:961	si_s627	TRINITY_DN3059_c0_g2	950	970	961	-36.10	-23.80	0.659279778393352	8.5	1-4,970-967;7-16,964-955;18-21,953-950	5-6,966-965[SIL];17-17,954-954[SIL]	((((.((((((((((..((((&))))..)))))))))).))))	GAUGGCUGCGGGAAGUACGCU&AGCGAUCUUUUCGUAGGCGUU	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN3059_c0_g2_961_TPlot.pdf
TRINITY_DN305_c1_g1:2737	si_s563	TRINITY_DN305_c1_g1	2726	2745	2737	-30.80	-20.20	0.655844155844156	10	2-8,2744-2738;11-19,2736-2728	1-1,2745-2745[UP5];9-10,2737-2737[AILq];20-21,2727-2726[UP3]	..(((((((((.-(((((((.&.)))))))..)))))))))..	AGUCCUUGUCCA-GAGAUGUA&AAUAUUUUCGGGACAAGGAAU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN305_c1_g1_2737_TPlot.pdf
TRINITY_DN305_c1_g1:3039	si_s85	TRINITY_DN305_c1_g1	3028	3046	3039	-33.80	-22.10	0.653846153846154	6	1-5,3046-3042;8-20,3041-3029	6-7,x-x[BULq];21-21,3028-3028[UP3]	.(((((((((((((--(((((&)))))..))))))))))))).	ACGAAGAAGAAGAA--GAAGG&CUUUCCUUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN305_c1_g1_3039_TPlot.pdf
TRINITY_DN305_c1_g1:3044	si_s83	TRINITY_DN305_c1_g1	3033	3067	3044	-30.90	-21.60	0.699029126213592	30	1-8,3067-3060;9-21,3045-3033	x-x,3059-3046[BULt]	(((((((((((((..............((((((((&))))))))--------------)))))))))))))	GAAGAAGAAGAAGGCAUCUCAAUAAAUGGGAAGAA&UUCUUUCC--------------UUUCUUCUUCUUC	2	0.999999999319823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN305_c1_g1_3044_TPlot.pdf
TRINITY_DN30602_c0_g1:69	si_a380	TRINITY_DN30602_c0_g1	59	78	69	-24.00	-15.70	0.654166666666667	9.5	4-12,75-67;14-21,66-59	1-3,78-76[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GUUCUUGG-UCGAGAUUAGGA&AAAUGAUUUCGAAUUAAGAAU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN30602_c0_g1_69_TPlot.pdf
TRINITY_DN30610_c0_g1:154	si_s73	TRINITY_DN30610_c0_g1	135	163	154	-24.00	-17.30	0.720833333333333	13	1-14,163-150;15-21,141-135	x-x,149-142[BULt]	(((((((........((((((((((((((&))))))))))))))--------)))))))	AAGGGAAUAGAACCUGGAGGAAGGAUAGA&UCUAUUUUUUUUCU--------UUCCUUU	4	0.999999999999968	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN30610_c0_g1_154_TPlot.pdf
TRINITY_DN30610_c0_g1:155	si_s72	TRINITY_DN30610_c0_g1	136	164	155	-24.10	-16.60	0.688796680497925	14	2-15,163-150;16-21,141-136	1-1,164-164[UP5];x-x,149-142[BULt]	((((((........((((((((((((((.&.))))))))))))))--------))))))	AGGGAAUAGAACCUGGAGGAAGGAUAGAU&UUCUAUUUUUUUUCU--------UUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN30610_c0_g1_155_TPlot.pdf
TRINITY_DN30610_c0_g1:158	si_a21	TRINITY_DN30610_c0_g1	148	167	158	-24.30	-16.70	0.687242798353909	7	1-13,167-155;16-20,153-149	14-15,154-154[AILq];21-21,148-148[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	CUGGAGG-AAGGAUAGAUAGG&CCUAUUUAUUUUUAGUUCUAA	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN30610_c0_g1_158_TPlot.pdf
TRINITY_DN3061_c0_g1:107	si_s499	TRINITY_DN3061_c0_g1	96	116	107	-22.60	-15.90	0.70353982300885	4.5	1-13,116-104;16-19,101-98	14-15,103-102[SIL];20-21,97-96[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	UAGGAAAAGUUUUGUUUAUAU&AUAUAAACAAAACAAUUCUAU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN3061_c0_g1_107_TPlot.pdf
TRINITY_DN3061_c0_g1:108	si_s498	TRINITY_DN3061_c0_g1	97	117	108	-22.40	-16.10	0.71875	4.5	2-14,116-104;17-20,101-98	1-1,117-117[UP5];15-16,103-102[SIL];21-21,97-97[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	AGGAAAAGUUUUGUUUAUAUA&AAUAUAAACAAAACAAUUCUA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN3061_c0_g1_108_TPlot.pdf
TRINITY_DN3061_c0_g1:109	si_s497	TRINITY_DN3061_c0_g1	98	118	109	-22.00	-15.60	0.709090909090909	5.5	3-15,116-104;18-21,101-98	1-2,118-117[UP5];16-17,103-102[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GGAAAAGUUUUGUUUAUAUAU&AAAUAUAAACAAAACAAUUCU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN3061_c0_g1_109_TPlot.pdf
TRINITY_DN3061_c0_g1:110	si_s496	TRINITY_DN3061_c0_g1	99	119	110	-21.70	-14.50	0.668202764976959	7	4-16,116-104;19-21,101-99	1-3,119-117[UP5];17-18,103-102[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	GAAAAGUUUUGUUUAUAUAUU&UAAAUAUAAACAAAACAAUUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN3061_c0_g1_110_TPlot.pdf
TRINITY_DN3061_c0_g1:111	si_s495	TRINITY_DN3061_c0_g1	100	120	111	-19.80	-13.70	0.691919191919192	11	5-17,116-104	1-4,120-117[UP5];18-21,103-100[UP3]	....(((((((((((((....&....)))))))))))))....	AAAAGUUUUGUUUAUAUAUUU&UUAAAUAUAAACAAAACAAUU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN3061_c0_g1_111_TPlot.pdf
TRINITY_DN3061_c0_g1:112	si_s494	TRINITY_DN3061_c0_g1	101	121	112	-19.80	-13.70	0.691919191919192	12	6-18,116-104	1-5,121-117[UP5];19-21,103-101[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAGUUUUGUUUAUAUAUUUC&UUUAAAUAUAAACAAAACAAU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN3061_c0_g1_112_TPlot.pdf
TRINITY_DN3061_c0_g1:113	si_s493	TRINITY_DN3061_c0_g1	102	122	113	-19.80	-13.70	0.691919191919192	13	7-19,116-104	1-6,122-117[UP5];20-21,103-102[UP3]	..(((((((((((((......&......)))))))))))))..	AAGUUUUGUUUAUAUAUUUCA&AUUUAAAUAUAAACAAAACAA	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN3061_c0_g1_113_TPlot.pdf
TRINITY_DN3061_c0_g1:114	si_s492	TRINITY_DN3061_c0_g1	103	123	114	-20.10	-13.70	0.681592039800995	14	8-20,116-104	1-7,123-117[UP5];21-21,103-103[UP3]	.(((((((((((((.......&.......))))))))))))).	AGUUUUGUUUAUAUAUUUCAA&UAUUUAAAUAUAAACAAAACA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN3061_c0_g1_114_TPlot.pdf
TRINITY_DN3061_c0_g1:115	si_s491	TRINITY_DN3061_c0_g1	104	124	115	-19.50	-13.20	0.676923076923077	15	9-21,116-104	1-8,124-117[UP5]	(((((((((((((........&........)))))))))))))	GUUUUGUUUAUAUAUUUCAAU&UUAUUUAAAUAUAAACAAAAC	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN3061_c0_g1_115_TPlot.pdf
TRINITY_DN3061_c0_g1:474	si_a287	TRINITY_DN3061_c0_g1	463	483	474	-29.20	-20.10	0.688356164383562	11	1-15,483-469	16-21,468-463[UP3]	......(((((((((((((((&)))))))))))))))......	GGGCUAUGGGUCCAGGUGGUC&GAUCGCUUGGAUUUAAAAAAG	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN3061_c0_g1_474_TPlot.pdf
TRINITY_DN30622_c0_g1:121	si_a278	TRINITY_DN30622_c0_g1	110	130	121	-34.20	-23.00	0.672514619883041	5.5	1-3,130-128;5-15,126-116;17-21,114-110	4-4,127-127[SIL];16-16,115-115[SIL]	(((((.(((((((((((.(((&))).))))))))))).)))))	AUCCGUGCGGUCUUUUUAUAG&CUACGAAAAGAUCGCUUGGAU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a278_TRINITY_DN30622_c0_g1_121_TPlot.pdf
TRINITY_DN30625_c0_g1:494	si_s452	TRINITY_DN30625_c0_g1	480	503	494	-25.50	-16.60	0.650980392156863	13	4-11,500-493;12-20,489-481	1-3,503-501[UP5];x-x,492-490[BULt];21-21,480-480[UP3]	.(((((((((...((((((((...&...))))))))---))))))))).	CUGAGAUAAUCGAUGUUGUUGAAA&AUAUAACAACA---AUUAUCUCAU	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s452_TRINITY_DN30625_c0_g1_494_TPlot.pdf
TRINITY_DN30625_c0_g1:575	si_a704	TRINITY_DN30625_c0_g1	565	584	575	-29.30	-19.40	0.662116040955631	6	1-16,584-569;18-21,568-565	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	GUUG-UUUGGGAUGUAUUGGU&ACUGGUACAUUCCAAAAUAAU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN30625_c0_g1_575_TPlot.pdf
TRINITY_DN3062_c0_g1:574	si_s524	TRINITY_DN3062_c0_g1	563	583	574	-23.90	-15.90	0.665271966527197	11.5	6-16,578-568;18-21,566-563	1-5,583-579[UP5];17-17,567-567[SIL]	((((.(((((((((((.....&.....))))))))))).))))	UCGAUAAUGGUUUCGAUCAGA&UUAAUUCGAAAUCAUUUUUGA	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN3062_c0_g1_574_TPlot.pdf
TRINITY_DN30638_c0_g1:627	si_a626	TRINITY_DN30638_c0_g1	617	637	627	-30.20	-20.90	0.69205298013245	8.5	1-2,637-636;3-10,634-627;12-19,626-619	x-x,635-635[BULt];11-11,x-x[BULq];20-21,618-617[UP3]	..((((((((-((((((((.((&))-)))))))).))))))))..	ACAAGUCGAC-UGAUGCGCACU&AG-GCGUAUUAUGUCGAUUUUU	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN30638_c0_g1_627_TPlot.pdf
TRINITY_DN3063_c0_g1:444	si_a783	TRINITY_DN3063_c0_g1	433	453	444	-24.70	-17.40	0.704453441295547	9.5	3-10,451-444;12-17,442-437	1-2,453-452[UP5];11-11,443-443[SIL];18-21,436-433[UP3]	....((((((.((((((((..&..)))))))).))))))....	CAAAAGAGAAUUAGAAGAGGA&AACUCUUCUAUUUUUCUAUUU	4	0.99999994174196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3063_c0_g1_444_TPlot.pdf
TRINITY_DN3063_c0_g1:457	si_s83	TRINITY_DN3063_c0_g1	446	466	457	-30.90	-26.60	0.86084142394822	6.5	4-21,463-446	1-3,466-464[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGAGGAAGAAAGGGAAAAG&UUCUUUCCUUUCUUCUUCUUC	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3063_c0_g1_457_TPlot.pdf
TRINITY_DN3063_c0_g1:684	si_a398	TRINITY_DN3063_c0_g1	673	693	684	-22.40	-15.90	0.709821428571429	14.5	7-20,687-674	1-6,693-688[UP5];21-21,673-673[UP3]	.((((((((((((((......&......)))))))))))))).	AGAACAAGGCGAUUCGGGUCC&AAUAUAGAAUUGUUUUGUUUA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3063_c0_g1_684_TPlot.pdf
TRINITY_DN30646_c0_g1:382	si_s665	TRINITY_DN30646_c0_g1	370	391	382	-33.60	-22.00	0.654761904761905	7.5	1-2,391-390;4-19,388-373;20-21,371-370	3-3,389-389[SIL];x-x,372-372[BULt]	((.((((((((((((((((.((&)).))))))))))))))))-))	UCGUGUGGUCAAUUUGGUUGCC&GGGGAUCGAAUUGAUUAUA-GA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN30646_c0_g1_382_TPlot.pdf
TRINITY_DN30649_c0_g1:2360	si_s153	TRINITY_DN30649_c0_g1	2349	2369	2360	-41.30	-28.10	0.680387409200969	12	6-19,2364-2351	1-5,2369-2365[UP5];20-21,2350-2349[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACGGCCAUGAAUCUCCGAAAC&CCAAAGGAGGUUCAUGGCCAG	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s153_TRINITY_DN30649_c0_g1_2360_TPlot.pdf
TRINITY_DN30652_c0_g2:1163	si_s74	TRINITY_DN30652_c0_g2	1151	1176	1163	-25.00	-17.40	0.696	11	1-5,1176-1172;6-16,1167-1157;17-21,1155-1151	x-x,1171-1168[BULt];x-x,1156-1156[BULt]	(((((.(((((((((((....(((((&)))))----)))))))))))-)))))	GAAGGUGGAAGAAAAAAUUAGGAUAG&CUAUU----UUUUUUCUUUC-CUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN30652_c0_g2_1163_TPlot.pdf
TRINITY_DN30652_c0_g2:1164	si_s73	TRINITY_DN30652_c0_g2	1152	1177	1164	-24.00	-15.80	0.658333333333333	11	1-6,1177-1172;7-17,1167-1157;18-21,1155-1152	x-x,1171-1168[BULt];x-x,1156-1156[BULt]	((((.(((((((((((....((((((&))))))----)))))))))))-))))	AAGGUGGAAGAAAAAAUUAGGAUAGA&UCUAUU----UUUUUUCUUUC-CUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN30652_c0_g2_1164_TPlot.pdf
TRINITY_DN30668_c0_g1:946	si_a469	TRINITY_DN30668_c0_g1	935	955	946	-21.10	-13.80	0.654028436018957	9.5	5-17,951-939;19-21,937-935	1-4,955-952[UP5];18-18,938-938[SIL]	(((.(((((((((((((....&....))))))))))))).)))	AUAUCAGUAAUUACGUAGCAC&AUAAUAUGUAAUUAUUGUUAU	4	0.999999822393667	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN30668_c0_g1_946_TPlot.pdf
TRINITY_DN3066_c0_g1:1759	si_s90	TRINITY_DN3066_c0_g1	1747	1768	1759	-35.30	-23.10	0.654390934844193	4	1-13,1768-1756;15-17,1754-1752;18-21,1750-1747	14-14,1755-1755[SIL];x-x,1751-1751[BULt]	((((.(((.(((((((((((((&))))))))))))).)))-))))	UCGACAGUAAAGAAGAGGAAAG&CUUUCUUCUUCUUCGCU-UCGG	2	0.999999999929391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3066_c0_g1_1759_TPlot.pdf
TRINITY_DN3066_c0_g1:1765	si_s79	TRINITY_DN3066_c0_g1	1756	1774	1765	-26.20	-18.50	0.706106870229008	5	3-12,1772-1763;15-21,1762-1756	1-2,1774-1773[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	AAGAAGA--GGAAAGAAAACA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3066_c0_g1_1765_TPlot.pdf
TRINITY_DN3066_c0_g1:1766	si_s83	TRINITY_DN3066_c0_g1	1755	1781	1766	-30.90	-20.90	0.676375404530744	14	1-7,1781-1775;8-20,1768-1756	x-x,1774-1769[BULt];21-21,1755-1755[UP3]	.(((((((((((((......(((((((&)))))))------))))))))))))).	AAAGAAGAGGAAAGAAAACAGAAAGAG&UUCUUUC------CUUUCUUCUUCUUC	2	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3066_c0_g1_1766_TPlot.pdf
TRINITY_DN3066_c0_g1:1767	si_s82	TRINITY_DN3066_c0_g1	1756	1782	1767	-28.90	-21.00	0.726643598615917	14.5	2-8,1781-1775;9-21,1768-1756	1-1,1782-1782[UP5];x-x,1774-1769[BULt]	(((((((((((((......(((((((.&.)))))))------)))))))))))))	AAGAAGAGGAAAGAAAACAGAAAGAGC&UUUCUUUC------CUUUCUUCUUCUU	3	0.999999999999821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3066_c0_g1_1767_TPlot.pdf
TRINITY_DN3066_c0_g1:1768	si_s76	TRINITY_DN3066_c0_g1	1756	1777	1768	-23.60	-16.70	0.707627118644068	5.5	2-4,1776-1774;6-18,1772-1760;19-21,1758-1756	1-1,1777-1777[UP5];5-5,1773-1773[SIL];x-x,1759-1759[BULt]	(((.(((((((((((((.(((.&.))).)))))))))))))-)))	AAGAAGAGGAAAGAAAACAGAA&AUUUUUUUUCUUUCCUUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3066_c0_g1_1768_TPlot.pdf
TRINITY_DN3066_c0_g1:1769	si_s75	TRINITY_DN3066_c0_g1	1757	1778	1769	-24.00	-15.80	0.658333333333333	7.5	3-5,1776-1774;7-19,1772-1760;20-21,1758-1757	1-2,1778-1777[UP5];6-6,1773-1773[SIL];x-x,1759-1759[BULt]	((.(((((((((((((.(((..&..))).)))))))))))))-))	AGAAGAGGAAAGAAAACAGAAA&UAUUUUUUUUCUUUCCUUU-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3066_c0_g1_1769_TPlot.pdf
TRINITY_DN3066_c0_g1:1771	si_s73	TRINITY_DN3066_c0_g1	1760	1780	1771	-24.00	-17.70	0.7375	5.5	1-3,1780-1778;5-7,1776-1774;9-21,1772-1760	4-4,1777-1777[SIL];8-8,1773-1773[SIL]	(((((((((((((.(((.(((&))).))).)))))))))))))	AGAGGAAAGAAAACAGAAAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999945049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3066_c0_g1_1771_TPlot.pdf
TRINITY_DN3066_c0_g1:1772	si_s72	TRINITY_DN3066_c0_g1	1761	1781	1772	-24.10	-17.30	0.717842323651452	6	1-4,1781-1778;6-8,1776-1774;10-21,1772-1761	5-5,1777-1777[SIL];9-9,1773-1773[SIL]	((((((((((((.(((.((((&)))).))).))))))))))))	GAGGAAAGAAAACAGAAAGAG&UUCUAUUUUUUUUCUUUCCUU	2	0.999999997258333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3066_c0_g1_1772_TPlot.pdf
TRINITY_DN3066_c0_g1:1775	si_s80	TRINITY_DN3066_c0_g1	1758	1784	1775	-28.20	-18.80	0.666666666666667	18.5	4-10,1781-1775;11-21,1768-1758	1-3,1784-1782[UP5];x-x,1774-1769[BULt]	(((((((((((......(((((((...&...)))))))------)))))))))))	GAAGAGGAAAGAAAACAGAAAGAGCAG&UUUUUCUUUC------CUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3066_c0_g1_1775_TPlot.pdf
TRINITY_DN3066_c0_g1:1810	si_a68	TRINITY_DN3066_c0_g1	1799	1818	1810	-25.40	-17.60	0.692913385826772	8.5	1-8,1818-1811;12-20,1808-1800	9-11,1810-1809[AILq];21-21,1799-1799[UP3]	.(((((((((..-((((((((&))))))))...))))))))).	GGAGAAACAAAA-GGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.999896175822429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3066_c0_g1_1810_TPlot.pdf
TRINITY_DN3066_c0_g1:1868	si_a399	TRINITY_DN3066_c0_g1	1857	1877	1868	-22.60	-15.30	0.676991150442478	10.5	4-6,1874-1872;9-21,1869-1857	1-3,1877-1875[UP5];7-8,1871-1870[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	AUGAACAAAACAACGCUGCAU&AUAUAGAAUUGUUUUGUUUAU	4	0.999999869687671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3066_c0_g1_1868_TPlot.pdf
TRINITY_DN30670_c2_g1:521	si_a551	TRINITY_DN30670_c2_g1	510	530	521	-31.60	-20.90	0.661392405063291	7.5	3-7,528-524;9-15,522-516;17-21,514-510	1-2,530-529[UP5];8-8,523-523[SIL];16-16,515-515[SIL]	(((((.(((((((.(((((..&..))))).))))))).)))))	GGGGAAGUAAAGAUAUAGGGA&AAUCUAUUUCUUUAUCUCCCC	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN30670_c2_g1_521_TPlot.pdf
TRINITY_DN3068_c0_g1:2359	si_a399	TRINITY_DN3068_c0_g1	2348	2368	2359	-22.60	-14.70	0.650442477876106	7	1-16,2368-2353	17-21,2352-2348[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCCUUUAGAAUAAUUCUAUAU&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999998241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3068_c0_g1_2359_TPlot.pdf
TRINITY_DN3068_c0_g1:2787	si_s639	TRINITY_DN3068_c0_g1	2775	2796	2787	-40.60	-27.10	0.667487684729064	7.5	1-14,2796-2783;16-18,2780-2778	15-15,2782-2781[AILt];19-21,2777-2775[UP3]	...(((..((((((((((((((&))))))))))))))-.)))...	AGCUUGUUGGGUAAACGCCUGC&GUAGGCGUUUGCCC-UCGAUAC	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN3068_c0_g1_2787_TPlot.pdf
TRINITY_DN3068_c0_g1:2789	si_s637	TRINITY_DN3068_c0_g1	2777	2798	2789	-40.90	-27.40	0.669926650366748	8	3-16,2796-2783;18-20,2780-2778	1-2,2798-2797[UP5];17-17,2782-2781[AILt];21-21,2777-2777[UP3]	.(((..((((((((((((((..&..))))))))))))))-.))).	CUUGUUGGGUAAACGCCUGCCG&UCGUAGGCGUUUGCCC-UCGAU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN3068_c0_g1_2789_TPlot.pdf
TRINITY_DN3068_c0_g1:2793	si_s633	TRINITY_DN3068_c0_g1	2782	2802	2793	-37.90	-27.00	0.712401055408971	13.5	7-20,2796-2783	1-6,2802-2797[UP5];21-21,2782-2782[UP3]	.((((((((((((((......&......)))))))))))))).	UGGGUAAACGCCUGCCGGUAG&CUUUUCGUAGGCGUUUGCCCU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN3068_c0_g1_2793_TPlot.pdf
TRINITY_DN3068_c0_g1:2794	si_s632	TRINITY_DN3068_c0_g1	2783	2803	2794	-38.20	-27.76	0.726701570680628	9.5	1-3,2803-2801;8-21,2796-2783	4-7,2800-2797[SIL]	((((((((((((((....(((&)))....))))))))))))))	GGGUAAACGCCUGCCGGUAGA&UCUUUUCGUAGGCGUUUGCCC	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN3068_c0_g1_2794_TPlot.pdf
TRINITY_DN3068_c0_g1:2795	si_s631	TRINITY_DN3068_c0_g1	2784	2812	2795	-36.00	-24.70	0.686111111111111	18.5	1-5,2812-2808;6-8,2804-2802;9-21,2796-2784	x-x,2807-2805[BULt];x-x,2801-2797[BULt]	(((((((((((((.....(((...(((((&)))))---)))-----)))))))))))))	GGUAAACGCCUGCCGGUAGAAUCUGAGAU&AUCUU---UUC-----GUAGGCGUUUGCC	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN3068_c0_g1_2795_TPlot.pdf
TRINITY_DN306_c0_g1:1250	si_s75	TRINITY_DN306_c0_g1	1239	1260	1250	-24.00	-16.60	0.691666666666667	8.5	1-6,1260-1255;7-18,1253-1242;20-21,1240-1239	x-x,1254-1254[BULt];19-19,1241-1241[SIL]	((.((((((((((((.((((((&))))))-)))))))))))).))	GGUGGGGAAGGAAAGCAGGAUA&UAUUUU-UUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN306_c0_g1_1250_TPlot.pdf
TRINITY_DN306_c0_g1:1253	si_s76	TRINITY_DN306_c0_g1	1242	1262	1253	-23.60	-15.90	0.673728813559322	7.5	1-3,1262-1260;5-8,1258-1255;10-21,1253-1242	4-4,1259-1259[SIL];9-9,1254-1254[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	GGGGAAGGAAAGCAGGAUAAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN306_c0_g1_1253_TPlot.pdf
TRINITY_DN306_c0_g1:2421	si_a633	TRINITY_DN306_c0_g1	2409	2430	2421	-26.40	-18.90	0.715909090909091	6	2-9,2429-2422;12-18,2419-2413;19-21,2411-2409	1-1,2430-2430[UP5];10-11,2421-2420[SIL];x-x,2412-2412[BULt]	(((.(((((((..((((((((.&.))))))))..)))))))-)))	UACAUCAAAAAUCUCGACAUAG&UUAUGUCGAUUUUUUUGA-GUA	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN306_c0_g1_2421_TPlot.pdf
TRINITY_DN306_c0_g1:3794	si_a150	TRINITY_DN306_c0_g1	3783	3803	3794	-29.90	-22.60	0.755852842809365	8	1-17,3803-3787	18-21,3786-3783[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGGAGGCUUUAAGGCAACAGC&GUUGUUGUUUUAAGGUCAAUC	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN306_c0_g1_3794_TPlot.pdf
TRINITY_DN30711_c3_g1:332	si_s313	TRINITY_DN30711_c3_g1	320	341	332	-30.80	-20.10	0.652597402597403	12.5	5-16,337-326;17-21,324-320	1-4,341-338[UP5];x-x,325-325[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GUGAUGAAGGGGGACGGGUAGA&AAAUUCUGUCCUUCUU-GUUAC	4	0.999999993859753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN30711_c3_g1_332_TPlot.pdf
TRINITY_DN3071_c0_g1:2780	si_a145	TRINITY_DN3071_c0_g1	2769	2792	2780	-28.10	-19.20	0.683274021352313	10	1-5,2792-2788;6-21,2784-2769	x-x,2787-2785[BULt]	((((((((((((((((...(((((&)))))---))))))))))))))))	ACUUUAAGACGGCAAUCAAGAUUA&UAAUC---GUUGUUGUUUUAAGGU	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN3071_c0_g1_2780_TPlot.pdf
TRINITY_DN3071_c0_g1:2781	si_a144	TRINITY_DN3071_c0_g1	2770	2793	2781	-27.40	-18.90	0.68978102189781	10	1-6,2793-2788;7-21,2784-2770	x-x,2787-2785[BULt]	(((((((((((((((...((((((&))))))---)))))))))))))))	CUUUAAGACGGCAAUCAAGAUUAA&UUAAUC---GUUGUUGUUUUAAGG	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN3071_c0_g1_2781_TPlot.pdf
TRINITY_DN3071_c0_g1:2783	si_a142	TRINITY_DN3071_c0_g1	2772	2795	2783	-23.50	-15.30	0.651063829787234	11.5	3-8,2793-2788;9-21,2784-2772	1-2,2795-2794[UP5];x-x,2787-2785[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	UUAAGACGGCAAUCAAGAUUAAAA&AAUUAAUC---GUUGUUGUUUUAA	2	0.999999999994141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3071_c0_g1_2783_TPlot.pdf
TRINITY_DN3072_c0_g1:2472	si_s6	TRINITY_DN3072_c0_g1	2461	2480	2472	-21.70	-14.40	0.663594470046083	7.5	2-8,2479-2473;10-19,2472-2463	1-1,2480-2480[UP5];9-9,x-x[BULq];20-21,2462-2461[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	GCUGGUAAUGGU-AGUAAUAA&AUAUUACUUAUUAUUACUAUA	4	0.99999750563007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN3072_c0_g1_2472_TPlot.pdf
TRINITY_DN3072_c0_g1:2511	si_a637	TRINITY_DN3072_c0_g1	2500	2520	2511	-25.80	-17.50	0.678294573643411	10.5	1-5,2520-2516;8-20,2513-2501	6-7,2515-2514[SIL];21-21,2500-2500[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	UUGUUGCUUAGGGACUUUGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.999999676823731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN3072_c0_g1_2511_TPlot.pdf
TRINITY_DN3072_c0_g1:3875	si_s773	TRINITY_DN3072_c0_g1	3864	3884	3875	-23.10	-15.20	0.658008658008658	12	4-17,3881-3868	1-3,3884-3882[UP5];18-21,3867-3864[UP3]	....((((((((((((((...&...))))))))))))))....	UCUAAUGGUAAUGGUAGUAAU&UUAAUUACUAUUGCUAUAAAA	2	0.999931146851312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN3072_c0_g1_3875_TPlot.pdf
TRINITY_DN3072_c0_g1:3877	si_s7	TRINITY_DN3072_c0_g1	3866	3885	3877	-21.70	-15.70	0.723502304147465	6.5	1-7,3885-3879;9-19,3878-3868	8-8,x-x[BULq];20-21,3867-3866[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	UAAUGGUAAUGGU-AGUAAUA&UAUUACUUAUUAUUACUAUAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN3072_c0_g1_3877_TPlot.pdf
TRINITY_DN3072_c0_g1:3894	si_s769	TRINITY_DN3072_c0_g1	3877	3903	3894	-27.00	-17.90	0.662962962962963	17	1-10,3903-3894;11-21,3887-3877	x-x,3893-3888[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	GUAGUAAUAGUUUCCUUGGUUAGUUGU&ACGAUUAAUU------ACUAUUGCUAU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN3072_c0_g1_3894_TPlot.pdf
TRINITY_DN3074_c0_g1:482	si_a230	TRINITY_DN3074_c0_g1	468	491	482	-26.90	-20.70	0.769516728624535	6	1-13,491-479;14-20,475-469	x-x,478-476[BULt];21-21,468-468[UP3]	.(((((((...(((((((((((((&)))))))))))))---))))))).	CCGAAUUGUAUAUUGUAGGAACAU&AUGUUUCUAUAAU---CAAUUCGA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN3074_c0_g1_482_TPlot.pdf
TRINITY_DN3074_c0_g1:598	si_s79	TRINITY_DN3074_c0_g1	588	607	598	-26.20	-18.50	0.706106870229008	4	2-11,606-597;13-20,596-589	1-1,607-607[UP5];12-12,x-x[BULq];21-21,588-588[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	UAGAAGAAA-GAAAGAAAAAU&UUUUUUCUUUCCUUUCUUCUU	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3074_c0_g1_598_TPlot.pdf
TRINITY_DN3074_c0_g1:599	si_s78	TRINITY_DN3074_c0_g1	589	608	599	-26.20	-18.50	0.706106870229008	4	3-12,606-597;14-21,596-589	1-2,608-607[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AGAAGAAA-GAAAGAAAAAUG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3074_c0_g1_599_TPlot.pdf
TRINITY_DN3074_c0_g1:600	si_s77	TRINITY_DN3074_c0_g1	590	609	600	-25.50	-17.40	0.68235294117647	6	4-13,606-597;15-21,596-590	1-3,609-607[UP5];14-14,x-x[BULq]	(((((((-((((((((((...&...)))))))))).)))))))	GAAGAAA-GAAAGAAAAAUGG&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3074_c0_g1_600_TPlot.pdf
TRINITY_DN30754_c0_g1:509	si_a709	TRINITY_DN30754_c0_g1	498	517	509	-26.60	-18.20	0.684210526315789	5	1-3,517-515;5-19,514-500	4-4,x-x[BULq];20-21,499-498[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	UUAUGGUUAUUUUGGAA-GUA&UACAUUCCAAAAUAAUCGUUA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN30754_c0_g1_509_TPlot.pdf
TRINITY_DN30763_c0_g1:526	si_a860	TRINITY_DN30763_c0_g1	516	536	526	-24.30	-17.00	0.699588477366255	7	1-7,536-530;9-16,527-520;18-21,519-516	8-8,529-528[AILt];17-17,x-x[BULq]	((((-((((((((..(((((((&)))))))-.)))))))).))))	AGUC-UUGAUGAUAGGGAUUUC&GAAAUCC-AAUUAUUAAAGAUU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN30763_c0_g1_526_TPlot.pdf
TRINITY_DN30763_c0_g1:527	si_a859	TRINITY_DN30763_c0_g1	517	537	527	-25.00	-17.00	0.68	7	1-8,537-530;10-17,527-520;19-21,519-517	9-9,529-528[AILt];18-18,x-x[BULq]	(((-((((((((..((((((((&))))))))-.)))))))).)))	GUC-UUGAUGAUAGGGAUUUCA&UGAAAUCC-AAUUAUUAAAGAU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a859_TRINITY_DN30763_c0_g1_527_TPlot.pdf
TRINITY_DN30769_c0_g2:567	si_a325	TRINITY_DN30769_c0_g2	556	576	567	-25.90	-19.40	0.749034749034749	5	1-12,576-565;15-19,562-558;21-21,556-556	13-14,564-563[SIL];20-20,557-557[SIL]	(.(((((..((((((((((((&))))))))))))..))))).)	AGAAGGAUCAGAAGAAUCAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN30769_c0_g2_567_TPlot.pdf
TRINITY_DN3076_c0_g1:1909	si_a147	TRINITY_DN3076_c0_g1	1898	1919	1909	-30.40	-19.90	0.654605263157895	7.5	2-6,1918-1914;7-14,1912-1905;17-21,1902-1898	1-1,1919-1919[UP5];x-x,1913-1913[BULt];15-16,1904-1903[SIL]	(((((..((((((((.(((((.&.)))))-))))))))..)))))	UGGCCAGAAAACAACAAGCGGC&AUCGUU-GUUGUUUUAAGGUCA	3	0.999999962005284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN3076_c0_g1_1909_TPlot.pdf
TRINITY_DN3076_c0_g1:2085	si_s78	TRINITY_DN3076_c0_g1	2073	2094	2085	-26.20	-19.30	0.736641221374046	6.5	1-14,2094-2081;15-19,2079-2075	x-x,2080-2080[BULt];20-21,2074-2073[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	CAAGGAACAGGAAAGAGAGAGA&UUUUUUUCUUUCCU-UUCUUCU	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3076_c0_g1_2085_TPlot.pdf
TRINITY_DN3076_c0_g1:2086	si_s77	TRINITY_DN3076_c0_g1	2074	2095	2086	-25.50	-20.20	0.792156862745098	5.5	1-15,2095-2081;16-20,2079-2075	x-x,2080-2080[BULt];21-21,2074-2074[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	AAGGAACAGGAAAGAGAGAGAA&UUUUUUUUCUUUCCU-UUCUUC	3	0.999998392297536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3076_c0_g1_2086_TPlot.pdf
TRINITY_DN3076_c0_g1:2088	si_s75	TRINITY_DN3076_c0_g1	2076	2097	2088	-24.00	-19.40	0.808333333333333	7.5	3-17,2095-2081;18-21,2079-2076	1-2,2097-2096[UP5];x-x,2080-2080[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GGAACAGGAAAGAGAGAGAAGA&UAUUUUUUUUCUUUCCU-UUCU	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3076_c0_g1_2088_TPlot.pdf
TRINITY_DN3076_c0_g1:6261	si_a899	TRINITY_DN3076_c0_g1	6249	6270	6261	-18.70	-13.00	0.695187165775401	7.5	4-12,6267-6259;13-21,6257-6249	1-3,6270-6268[UP5];x-x,6258-6258[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	UUUUUAUGUGUACUUAUUAAGU&UAAUAAUAAGUA-AUAUAAAAA	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN3076_c0_g1_6261_TPlot.pdf
TRINITY_DN3076_c0_g1:6524	si_s432	TRINITY_DN3076_c0_g1	6513	6533	6524	-21.30	-17.40	0.816901408450704	6.5	3-18,6531-6516	1-2,6533-6532[UP5];19-21,6515-6513[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAAAGUAUGUAAUUAUUGUAA&UAACAAUAAUUACAUAUUAUA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN3076_c0_g1_6524_TPlot.pdf
TRINITY_DN3076_c0_g1:6525	si_s431	TRINITY_DN3076_c0_g1	6514	6534	6525	-21.10	-17.40	0.824644549763033	7.5	4-19,6531-6516	1-3,6534-6532[UP5];20-21,6515-6514[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAGUAUGUAAUUAUUGUAAG&AUAACAAUAAUUACAUAUUAU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN3076_c0_g1_6525_TPlot.pdf
TRINITY_DN3076_c0_g1:6526	si_s430	TRINITY_DN3076_c0_g1	6515	6535	6526	-21.30	-17.40	0.816901408450704	8.5	5-20,6531-6516	1-4,6535-6532[UP5];21-21,6515-6515[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGUAUGUAAUUAUUGUAAGA&UAUAACAAUAAUUACAUAUUA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN3076_c0_g1_6526_TPlot.pdf
TRINITY_DN3076_c0_g1:6527	si_s429	TRINITY_DN3076_c0_g1	6516	6536	6527	-21.10	-17.10	0.81042654028436	9.5	6-21,6531-6516	1-5,6536-6532[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGUAUGUAAUUAUUGUAAGAU&AUAUAACAAUAAUUACAUAUU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN3076_c0_g1_6527_TPlot.pdf
TRINITY_DN3076_c0_g1:6529	si_s427	TRINITY_DN3076_c0_g1	6518	6538	6529	-23.00	-15.00	0.652173913043478	13	8-21,6531-6518	1-7,6538-6532[UP5]	((((((((((((((.......&.......))))))))))))))	UAUGUAAUUAUUGUAAGAUAU&CUAUAUAACAAUAAUUACAUA	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN3076_c0_g1_6529_TPlot.pdf
TRINITY_DN3077_c2_g1:2307	si_a318	TRINITY_DN3077_c2_g1	2296	2316	2307	-22.50	-14.70	0.653333333333333	8	2-10,2315-2307;13-20,2304-2297	1-1,2316-2316[UP5];11-12,2306-2305[SIL];21-21,2296-2296[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	UUAGAAAAGCAGUGGAUAAAG&AUUUAUCCAUGAUUUUUUUAU	2	0.99999999985824	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3077_c2_g1_2307_TPlot.pdf
TRINITY_DN3077_c2_g1:2358	si_s81	TRINITY_DN3077_c2_g1	2346	2372	2358	-28.90	-18.90	0.653979238754325	15.5	1-8,2372-2365;9-12,2359-2356;13-20,2354-2347	x-x,2364-2360[BULt];x-x,2355-2355[BULt];21-21,2346-2346[UP3]	.((((((((.((((.....((((((((&))))))))-----))))-)))))))).	CGAAGAGGACAAGGCACUUGAAGAAGA&UUUUCUUU-----CCUU-UCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3077_c2_g1_2358_TPlot.pdf
TRINITY_DN30793_c3_g1:899	si_a452	TRINITY_DN30793_c3_g1	888	908	899	-23.00	-15.60	0.678260869565217	8.5	2-19,907-890	1-1,908-908[UP5];20-21,889-888[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CGGUGUGUAAUAAUGAUUGUA&GAUAAUUGUUGUUAUAUAUAA	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN30793_c3_g1_899_TPlot.pdf
TRINITY_DN3079_c0_g1:1197	si_s604	TRINITY_DN3079_c0_g1	1186	1206	1197	-26.80	-18.80	0.701492537313433	7.5	1-15,1206-1192	16-21,1191-1186[UP3]	......(((((((((((((((&)))))))))))))))......	GUCGACGAAAAGAUUUGCUUG&CAAGCGAAUCUUUUUUAAAUC	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s604_TRINITY_DN3079_c0_g1_1197_TPlot.pdf
TRINITY_DN3079_c0_g1:1198	si_s603	TRINITY_DN3079_c0_g1	1187	1207	1198	-27.20	-19.20	0.705882352941177	7.5	2-16,1206-1192	1-1,1207-1207[UP5];17-21,1191-1187[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCGACGAAAAGAUUUGCUUGA&CCAAGCGAAUCUUUUUUAAAU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN3079_c0_g1_1198_TPlot.pdf
TRINITY_DN3079_c0_g1:1199	si_s602	TRINITY_DN3079_c0_g1	1188	1208	1199	-28.10	-19.20	0.683274021352313	8.5	3-17,1206-1192	1-2,1208-1207[UP5];18-21,1191-1188[UP3]	....(((((((((((((((..&..)))))))))))))))....	CGACGAAAAGAUUUGCUUGAU&UCCAAGCGAAUCUUUUUUAAA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN3079_c0_g1_1199_TPlot.pdf
TRINITY_DN3079_c0_g1:1200	si_s601	TRINITY_DN3079_c0_g1	1189	1209	1200	-28.30	-19.20	0.678445229681979	9.5	4-18,1206-1192	1-3,1209-1207[UP5];19-21,1191-1189[UP3]	...(((((((((((((((...&...)))))))))))))))...	GACGAAAAGAUUUGCUUGAUA&AUCCAAGCGAAUCUUUUUUAA	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN3079_c0_g1_1200_TPlot.pdf
TRINITY_DN3079_c0_g1:1201	si_s600	TRINITY_DN3079_c0_g1	1190	1210	1201	-28.20	-19.20	0.680851063829787	10.5	5-19,1206-1192	1-4,1210-1207[UP5];20-21,1191-1190[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGAAAAGAUUUGCUUGAUAU&AAUCCAAGCGAAUCUUUUUUA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN3079_c0_g1_1201_TPlot.pdf
TRINITY_DN3079_c0_g1:439	si_a720	TRINITY_DN3079_c0_g1	427	448	439	-35.30	-23.30	0.660056657223796	11	4-15,445-434;16-17,432-431	1-3,448-446[UP5];x-x,433-433[BULt];18-21,430-427[UP3]	....((.((((((((((((...&...))))))))))))-))....	UCCAGCACCGAGUGACGAUCCG&AUAAUCGUUACUCGG-GCAUCU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN3079_c0_g1_439_TPlot.pdf
TRINITY_DN3079_c0_g1:440	si_a719	TRINITY_DN3079_c0_g1	428	449	440	-34.60	-23.30	0.673410404624277	12	5-16,445-434;17-18,432-431	1-4,449-446[UP5];x-x,433-433[BULt];19-21,430-428[UP3]	...((.((((((((((((....&....))))))))))))-))...	CCAGCACCGAGUGACGAUCCGC&AAUAAUCGUUACUCGG-GCAUC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN3079_c0_g1_440_TPlot.pdf
TRINITY_DN3079_c0_g1:442	si_a717	TRINITY_DN3079_c0_g1	430	451	442	-32.40	-23.30	0.719135802469136	14	7-18,445-434;19-20,432-431	1-6,451-446[UP5];x-x,433-433[BULt];21-21,430-430[UP3]	.((.((((((((((((......&......))))))))))))-)).	AGCACCGAGUGACGAUCCGCUU&AAAAUAAUCGUUACUCGG-GCA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN3079_c0_g1_442_TPlot.pdf
TRINITY_DN3079_c0_g1:636	si_s454	TRINITY_DN3079_c0_g1	625	646	636	-25.50	-17.80	0.698039215686275	10.5	3-8,644-639;10-19,636-627	1-2,646-645[UP5];9-9,638-637[AILt];20-21,626-625[UP3]	..((((((((((..((((((..&..))))))-.))))))))))..	AGGUGAGAUGAUGGGUUGUUCC&AUAACAAC-AAUUAUCUCAUAU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN3079_c0_g1_636_TPlot.pdf
TRINITY_DN3079_c0_g1:77	si_a572	TRINITY_DN3079_c0_g1	66	86	77	-30.40	-19.80	0.651315789473684	7.5	1-6,86-81;9-20,78-67	7-8,80-79[SIL];21-21,66-66[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	GGUUAUAAACAUAAUGUUCGC&GUGAAUCGUAUGUUUGUAACA	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN3079_c0_g1_77_TPlot.pdf
TRINITY_DN30808_c0_g1:72	si_a767	TRINITY_DN30808_c0_g1	59	82	72	-30.10	-21.50	0.714285714285714	6.5	1-3,82-80;4-16,78-66;17-21,63-59	x-x,79-79[BULt];x-x,65-64[BULt]	(((((..(((((((((((((.(((&)))-)))))))))))))--)))))	GGGUUUGGGGUCAAUCAGAACACC&GGU-UUUUGAUUGAUUC--AACUC	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN30808_c0_g1_72_TPlot.pdf
TRINITY_DN3080_c0_g1:2098	si_a331	TRINITY_DN3080_c0_g1	2088	2108	2098	-30.60	-20.00	0.65359477124183	6	1-7,2108-2102;8-14,2100-2094;16-20,2093-2089	x-x,2101-2101[BULt];15-15,x-x[BULq];21-21,2088-2088[UP3]	.(((((-(((((((.(((((((&)))))))-))))))).))))).	GUUGGG-CGAGGAACUGAAAAA&UUUUUUA-UUCCUUGUCCCGAA	4	0.999999846289191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN3080_c0_g1_2098_TPlot.pdf
TRINITY_DN3080_c0_g1:2105	si_a325	TRINITY_DN3080_c0_g1	2093	2114	2105	-25.90	-18.40	0.71042471042471	8	4-13,2111-2102;14-21,2100-2093	1-3,2114-2112[UP5];x-x,2101-2101[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GCGAGGAACUGAAAAAAUCCAA&CAUGAUUUUUUUA-UUCCUUGU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN3080_c0_g1_2105_TPlot.pdf
TRINITY_DN30816_c0_g1:1421	si_s75	TRINITY_DN30816_c0_g1	1410	1430	1421	-24.00	-15.80	0.658333333333333	10	5-9,1426-1422;11-21,1420-1410	1-4,1430-1427[UP5];10-10,1421-1421[SIL]	(((((((((((.(((((....&....))))).)))))))))))	AGAAAGGGGAGUAAAAAUUAG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30816_c0_g1_1421_TPlot.pdf
TRINITY_DN30816_c0_g1:1424	si_s71	TRINITY_DN30816_c0_g1	1414	1433	1424	-25.70	-16.80	0.653696498054475	6	1-6,1433-1428;8-12,1426-1422;15-21,1420-1414	7-7,1427-1427[SIL];13-14,1421-1421[AILq]	(((((((.-(((((.((((((&)))))).)))))..)))))))	AGGGGAGU-AAAAAUUAGGAG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN30816_c0_g1_1424_TPlot.pdf
TRINITY_DN30816_c0_g1:1663	si_a70	TRINITY_DN30816_c0_g1	1652	1671	1663	-23.90	-16.80	0.702928870292887	5.5	1-8,1671-1664;10-16,1663-1657;18-21,1655-1652	9-9,x-x[BULq];17-17,1656-1656[SIL]	((((.(((((((-((((((((&)))))))).))))))).))))	GAUGCAGAGCAA-UUGAGAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.99935304111418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN30816_c0_g1_1663_TPlot.pdf
TRINITY_DN30816_c0_g1:1669	si_a63	TRINITY_DN30816_c0_g1	1659	1678	1669	-30.20	-20.20	0.66887417218543	7.5	3-15,1676-1664;17-21,1663-1659	1-2,1678-1677[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	AGCAA-UUGAGAGAAGUGGAA&ACUCGCUUCUUUCAAAUUGUU	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN30816_c0_g1_1669_TPlot.pdf
TRINITY_DN30816_c0_g1:674	si_a437	TRINITY_DN30816_c0_g1	663	683	674	-31.90	-20.80	0.652037617554859	8.5	4-13,680-671;15-21,669-663	1-3,683-681[UP5];14-14,670-670[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	AUUAUCUGGUGUUCAACGUUU&AUCCGUUGGAUAUGAGAUAAU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a437_TRINITY_DN30816_c0_g1_674_TPlot.pdf
TRINITY_DN3081_c0_g1:11785	si_s77	TRINITY_DN3081_c0_g1	11774	11794	11785	-25.50	-17.30	0.67843137254902	12	3-7,11792-11788;9-20,11786-11775	1-2,11794-11793[UP5];8-8,11787-11787[SIL];21-21,11774-11774[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGAGAAGGGAGAGUGGGGACG&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3081_c0_g1_11785_TPlot.pdf
TRINITY_DN3081_c0_g1:2087	si_a495	TRINITY_DN3081_c0_g1	2076	2098	2087	-31.90	-21.48	0.673354231974922	10.5	2-6,2097-2093;9-21,2088-2076	1-1,2098-2098[UP5];7-8,2092-2089[AILt]	(((((((((((((....(((((.&.)))))--..)))))))))))))	GGAAGACGGAGAAGAAAACAUAA&AUAUGU--CGUUUUUCGUCUUCC	4	0.999999983461381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN3081_c0_g1_2087_TPlot.pdf
TRINITY_DN3081_c0_g1:2652	si_a784	TRINITY_DN3081_c0_g1	2641	2661	2652	-24.70	-16.10	0.651821862348178	9.5	2-10,2660-2652;12-16,2650-2646	1-1,2661-2661[UP5];11-11,2651-2651[SIL];17-21,2645-2641[UP3]	.....(((((.(((((((((.&.))))))))).))))).....	UGGAAAGAGACAUAGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3081_c0_g1_2652_TPlot.pdf
TRINITY_DN3081_c0_g1:2653	si_a783	TRINITY_DN3081_c0_g1	2642	2662	2653	-24.70	-16.10	0.651821862348178	10.5	3-11,2660-2652;13-17,2650-2646	1-2,2662-2661[UP5];12-12,2651-2651[SIL];18-21,2645-2642[UP3]	....(((((.(((((((((..&..))))))))).)))))....	GGAAAGAGACAUAGAGGAGAC&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3081_c0_g1_2653_TPlot.pdf
TRINITY_DN3081_c0_g1:5107	si_a455	TRINITY_DN3081_c0_g1	5096	5116	5107	-21.10	-14.40	0.682464454976303	9	3-17,5114-5100	1-2,5116-5115[UP5];18-21,5099-5096[UP3]	....(((((((((((((((..&..)))))))))))))))....	AACAUAUAUGUAACAAUAAGA&AAUUGUUGUUAUAUAUAAUAU	4	0.999995461191302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN3081_c0_g1_5107_TPlot.pdf
TRINITY_DN3081_c0_g1:6579	si_s64	TRINITY_DN3081_c0_g1	6568	6587	6579	-24.10	-16.40	0.680497925311203	8	1-4,6587-6584;6-20,6583-6569	5-5,x-x[BULq];21-21,6568-6568[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	UGGAGAAGUAGGGGUU-CUGA&UUAGCAACUUCUAUUUUUUUU	4	0.999999989497994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3081_c0_g1_6579_TPlot.pdf
TRINITY_DN3081_c0_g1:7772	si_s68	TRINITY_DN3081_c0_g1	7761	7781	7772	-23.10	-15.10	0.653679653679654	11	5-21,7777-7761	1-4,7781-7778[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGGAAAGGGUAGAAUCAC&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3081_c0_g1_7772_TPlot.pdf
TRINITY_DN3081_c0_g1:8477	si_a788	TRINITY_DN3081_c0_g1	8466	8488	8477	-24.80	-17.96	0.724193548387097	12.5	1-4,8488-8485;8-20,8479-8467	5-7,8484-8480[AILt];21-21,8466-8466[UP3]	.(((((((((((((.....((((&))))--...))))))))))))).	GUGGAAGAUAGAAAUAACGGGAA&UUCU--AUUUUUCUAUUUUCCAA	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3081_c0_g1_8477_TPlot.pdf
TRINITY_DN3081_c0_g1:8923	si_s76	TRINITY_DN3081_c0_g1	8912	8932	8923	-23.60	-15.70	0.665254237288135	7.5	3-14,8930-8919;16-20,8917-8913	1-2,8932-8931[UP5];15-15,8918-8918[SIL];21-21,8912-8912[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	CAGAGAUGAGAGAAAGAAACC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3081_c0_g1_8923_TPlot.pdf
TRINITY_DN3081_c0_g3:1167	si_s73	TRINITY_DN3081_c0_g3	1156	1176	1167	-24.00	-16.00	0.666666666666667	8.5	1-8,1176-1169;10-13,1167-1164;15-20,1162-1157	9-9,1168-1168[SIL];14-14,1163-1163[SIL];21-21,1156-1156[UP3]	.((((((.((((.((((((((&)))))))).)))).)))))).	UAAGGGAUGGAAUGAGGUAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3081_c0_g3_1167_TPlot.pdf
TRINITY_DN3081_c0_g3:1745	si_a335	TRINITY_DN3081_c0_g3	1734	1754	1745	-31.10	-20.60	0.662379421221865	9.5	1-9,1754-1746;11-15,1744-1740	10-10,1745-1745[SIL];16-21,1739-1734[UP3]	......(((((.(((((((((&))))))))).)))))......	UAGUUGUGGGAGAAGGAAUGA&UUAUUCCUUGUCCCGAAAAUA	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN3081_c0_g3_1745_TPlot.pdf
TRINITY_DN3081_c0_g3:1747	si_a333	TRINITY_DN3081_c0_g3	1736	1756	1747	-30.60	-22.40	0.73202614379085	7.5	1-11,1756-1746;13-17,1744-1740	12-12,1745-1745[SIL];18-21,1739-1736[UP3]	....(((((.(((((((((((&))))))))))).)))))....	GUUGUGGGAGAAGGAAUGAAA&UUUUAUUCCUUGUCCCGAAAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN3081_c0_g3_1747_TPlot.pdf
TRINITY_DN3081_c0_g3:1751	si_a329	TRINITY_DN3081_c0_g3	1740	1760	1751	-29.60	-23.50	0.793918918918919	7.5	3-15,1758-1746;17-21,1744-1740	1-2,1760-1759[UP5];16-16,1745-1745[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UGGGAGAAGGAAUGAAAGGGA&AUUUUUUUAUUCCUUGUCCCG	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3081_c0_g3_1751_TPlot.pdf
TRINITY_DN3081_c0_g3:1752	si_a328	TRINITY_DN3081_c0_g3	1741	1761	1752	-30.10	-22.80	0.757475083056478	9	4-16,1758-1746;18-21,1744-1741	1-3,1761-1759[UP5];17-17,1745-1745[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GGGAGAAGGAAUGAAAGGGAU&GAUUUUUUUAUUCCUUGUCCC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN3081_c0_g3_1752_TPlot.pdf
TRINITY_DN3081_c0_g3:1754	si_s79	TRINITY_DN3081_c0_g3	1743	1763	1754	-26.20	-17.30	0.66030534351145	10	4-11,1760-1753;13-21,1751-1743	1-3,1763-1761[UP5];12-12,1752-1752[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAGAAGGAAUGAAAGGGAUAU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3081_c0_g3_1754_TPlot.pdf
TRINITY_DN3081_c0_g3:2024	si_s76	TRINITY_DN3081_c0_g3	2013	2033	2024	-23.60	-19.90	0.843220338983051	8.5	4-20,2030-2014	1-3,2033-2031[UP5];21-21,2013-2013[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGGAAGGGGGAGAAAAAAUGG&AUUUUUUUUCUUUCCUUUCUU	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3081_c0_g3_2024_TPlot.pdf
TRINITY_DN3081_c0_g3:2554	si_a783	TRINITY_DN3081_c0_g3	2541	2563	2554	-24.70	-17.30	0.700404858299595	9.5	3-10,2561-2554;11-19,2551-2543	1-2,2563-2562[UP5];x-x,2553-2552[BULt];20-21,2542-2541[UP3]	..(((((((((..((((((((..&..))))))))--)))))))))..	UUGUAGAAAAAAUUAGAAGAGAA&AACUCUUCUA--UUUUUCUAUUU	4	0.99999997500826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3081_c0_g3_2554_TPlot.pdf
TRINITY_DN3081_c0_g3:3406	si_s81	TRINITY_DN3081_c0_g3	3395	3416	3406	-28.90	-19.50	0.674740484429066	6	1-9,3416-3408;10-13,3406-3403;15-21,3401-3395	x-x,3407-3407[BULt];14-14,3402-3402[SIL]	(((((((.((((.(((((((((&)))))))))-)))).)))))))	GGAAGAACGAAGAGGAGGAAAA&UUUUCUUUC-CUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3081_c0_g3_3406_TPlot.pdf
TRINITY_DN3081_c0_g3:3976	si_a499	TRINITY_DN3081_c0_g3	3967	3985	3976	-35.20	-25.20	0.715909090909091	5	1-12,3985-3974;15-21,3973-3967	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	CCAAGGA--AUGGAAAACGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3081_c0_g3_3976_TPlot.pdf
TRINITY_DN3081_c0_g3:3977	si_a498	TRINITY_DN3081_c0_g3	3968	3986	3977	-33.50	-22.90	0.683582089552239	5	1-13,3986-3974;16-21,3973-3968	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	CAAGGA--AUGGAAAACGGCA&UGUCGUUUUUCGUCUUCCUUG	2	0.999977815886759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3081_c0_g3_3977_TPlot.pdf
TRINITY_DN3081_c0_g3:627	si_a22	TRINITY_DN3081_c0_g3	617	636	627	-23.50	-15.60	0.663829787234043	6.5	1-12,636-625;14-18,624-620	13-13,x-x[BULq];19-21,619-617[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	GUGGGAAC-AGAAAUGAAUAG&CUAUUUAUUUUUAGUUCUAAG	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN3081_c0_g3_627_TPlot.pdf
TRINITY_DN3081_c0_g3:784	si_s605	TRINITY_DN3081_c0_g3	772	796	784	-27.50	-19.00	0.690909090909091	10.5	1-7,796-790;8-15,786-779;18-21,775-772	x-x,789-787[BULt];16-17,778-776[AILt]	((((...((((((((...(((((((&)))))))---))))))))-..))))	GGAUGCGGAAGAAGAACGUUCGCUU&AAGCGAA---UCUUUUUU-AAAUCC	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN3081_c0_g3_784_TPlot.pdf
TRINITY_DN30828_c0_g1:70	si_s76	TRINITY_DN30828_c0_g1	59	79	70	-23.60	-16.50	0.699152542372881	9.5	4-16,76-64;18-20,62-60	1-3,79-77[UP5];17-17,63-63[SIL];21-21,59-59[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	UAGGUAGGAAAGAAGAAGCCA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN30828_c0_g1_70_TPlot.pdf
TRINITY_DN30828_c0_g1:71	si_s75	TRINITY_DN30828_c0_g1	60	80	71	-24.00	-16.50	0.6875	10.5	5-17,76-64;19-21,62-60	1-4,80-77[UP5];18-18,63-63[SIL]	(((.(((((((((((((....&....))))))))))))).)))	AGGUAGGAAAGAAGAAGCCAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30828_c0_g1_71_TPlot.pdf
TRINITY_DN3082_c0_g1:15556	si_s591	TRINITY_DN3082_c0_g1	15545	15565	15556	-33.60	-24.40	0.726190476190476	6	1-4,15565-15562;6-14,15560-15552;16-20,15550-15546	5-5,15561-15561[SIL];15-15,15551-15551[SIL];21-21,15545-15545[UP3]	.(((((.(((((((((.((((&)))).))))))))).))))).	CUCGCUCGGAUUUGUUGAUGA&UCAUGGAUAAAUCCAAGCGAA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s591_TRINITY_DN3082_c0_g1_15556_TPlot.pdf
TRINITY_DN3082_c0_g1:15557	si_s590	TRINITY_DN3082_c0_g1	15546	15566	15557	-33.70	-24.10	0.71513353115727	6	2-5,15565-15562;7-15,15560-15552;17-21,15550-15546	1-1,15566-15566[UP5];6-6,15561-15561[SIL];16-16,15551-15551[SIL]	(((((.(((((((((.((((.&.)))).))))))))).)))))	UCGCUCGGAUUUGUUGAUGAA&AUCAUGGAUAAAUCCAAGCGA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s590_TRINITY_DN3082_c0_g1_15557_TPlot.pdf
TRINITY_DN3082_c0_g1:15787	si_s181	TRINITY_DN3082_c0_g1	15776	15797	15787	-34.60	-24.40	0.705202312138728	7	1-7,15797-15791;8-11,15789-15786;13-14,15784-15783;16-20,15781-15777	x-x,15790-15790[BULt];12-12,15785-15785[SIL];15-15,15782-15782[SIL];21-21,15776-15776[UP3]	.(((((.((.((((.(((((((&)))))))-)))).)).))))).	CGUGAUGGUCACUCAGGGCAUC&GAUGCCC-GAGUAACGAUUAUU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN3082_c0_g1_15787_TPlot.pdf
TRINITY_DN3082_c0_g1:15788	si_s180	TRINITY_DN3082_c0_g1	15777	15798	15788	-35.30	-25.50	0.722379603399434	5	1-8,15798-15791;9-12,15789-15786;14-15,15784-15783;17-21,15781-15777	x-x,15790-15790[BULt];13-13,15785-15785[SIL];16-16,15782-15782[SIL]	(((((.((.((((.((((((((&))))))))-)))).)).)))))	GUGAUGGUCACUCAGGGCAUCU&AGAUGCCC-GAGUAACGAUUAU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s180_TRINITY_DN3082_c0_g1_15788_TPlot.pdf
TRINITY_DN3082_c0_g1:15789	si_s179	TRINITY_DN3082_c0_g1	15778	15799	15789	-35.10	-25.00	0.712250712250712	4.5	1-9,15799-15791;10-13,15789-15786;15-16,15784-15783;18-21,15781-15778	x-x,15790-15790[BULt];14-14,15785-15785[SIL];17-17,15782-15782[SIL]	((((.((.((((.(((((((((&)))))))))-)))).)).))))	UGAUGGUCACUCAGGGCAUCUU&AAGAUGCCC-GAGUAACGAUUA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s179_TRINITY_DN3082_c0_g1_15789_TPlot.pdf
TRINITY_DN3082_c0_g1:15794	si_s175	TRINITY_DN3082_c0_g1	15782	15805	15794	-38.10	-25.50	0.669291338582677	8	1-4,15805-15802;5-13,15799-15791;14-17,15789-15786;19-20,15784-15783	x-x,15801-15800[BULt];x-x,15790-15790[BULt];18-18,15785-15785[SIL];21-21,15782-15782[UP3]	.((.((((.(((((((((..((((&))))--)))))))))-)))).)).	GGUCACUCAGGGCAUCUUCCUGCC&GGUA--AAGAUGCCC-GAGUAACG	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s175_TRINITY_DN3082_c0_g1_15794_TPlot.pdf
TRINITY_DN3082_c0_g1:15795	si_s174	TRINITY_DN3082_c0_g1	15783	15806	15795	-39.00	-28.40	0.728205128205128	7	1-5,15806-15802;6-14,15799-15791;15-18,15789-15786;20-21,15784-15783	x-x,15801-15800[BULt];x-x,15790-15790[BULt];19-19,15785-15785[SIL]	((.((((.(((((((((..(((((&)))))--)))))))))-)))).))	GUCACUCAGGGCAUCUUCCUGCCC&GGGUA--AAGAUGCCC-GAGUAAC	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN3082_c0_g1_15795_TPlot.pdf
TRINITY_DN3082_c0_g1:15809	si_a814	TRINITY_DN3082_c0_g1	15797	15817	15809	-32.90	-22.30	0.677811550151976	6	1-5,15817-15813;7-13,15812-15806;16-20,15802-15798	6-6,x-x[BULq];14-15,15805-15803[AILt];21-21,15797-15797[UP3]	.(((((...(((((((-(((((&))))).)))))))-..))))).	CUUCCUGCCCUUCUUC-UCGCU&AGCGAAGAAGAAG-AAAGGAAA	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN3082_c0_g1_15809_TPlot.pdf
TRINITY_DN3082_c0_g1:17124	si_s534	TRINITY_DN3082_c0_g1	17113	17135	17124	-28.80	-18.80	0.652777777777778	12	3-7,17133-17129;9-19,17125-17115	1-2,17135-17134[UP5];8-8,17128-17126[AILt];20-21,17114-17113[UP3]	..(((((((((((...(((((..&..)))))--.)))))))))))..	GAUGAUCGGAUCACUCAAGUGCG&AUCAUUU--UUGAUCCGAUCAAA	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN3082_c0_g1_17124_TPlot.pdf
TRINITY_DN3082_c0_g1:5107	si_s873	TRINITY_DN3082_c0_g1	5096	5117	5107	-30.30	-20.40	0.673267326732673	10	1-7,5117-5111;8-14,5109-5103	x-x,5110-5110[BULt];15-21,5102-5096[UP3]	.......(((((((.(((((((&)))))))-))))))).......	CCGCUUCAGUUCUACGGACCGG&CCGGUCU-UAGAACUAAAAAUA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s873_TRINITY_DN3082_c0_g1_5107_TPlot.pdf
TRINITY_DN3082_c0_g1:9354	si_s809	TRINITY_DN3082_c0_g1	9343	9363	9354	-28.50	-19.60	0.687719298245614	10	1-8,9363-9356;10-16,9354-9348	9-9,9355-9355[SIL];17-21,9347-9343[UP3]	.....(((((((.((((((((&)))))))).))))))).....	AGACUGAGGAGGCGGCGAAGA&UCUUCGUUACCUUUUCUUAAU	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3082_c0_g1_9354_TPlot.pdf
TRINITY_DN3082_c0_g1:9359	si_s804	TRINITY_DN3082_c0_g1	9348	9368	9359	-27.90	-19.20	0.688172043010753	12.5	6-13,9363-9356;15-21,9354-9348	1-5,9368-9364[UP5];14-14,9355-9355[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	GAGGAGGCGGCGAAGAGACUC&UUUUAUCUUCGUUACCUUUUC	4	0.999999198518655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3082_c0_g1_9359_TPlot.pdf
TRINITY_DN30831_c0_g1:66	si_a796	TRINITY_DN30831_c0_g1	55	75	66	-32.70	-23.80	0.72782874617737	4	2-7,74-69;9-15,67-61;17-21,59-55	1-1,75-75[UP5];8-8,68-68[SIL];16-16,60-60[SIL]	(((((.(((((((.((((((.&.)))))).))))))).)))))	GCUUCCGAUUGGAUAAUAGAU&UUCUAUUUUCCAAUCCGAAGC	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN30831_c0_g1_66_TPlot.pdf
TRINITY_DN30831_c0_g1:67	si_a795	TRINITY_DN30831_c0_g1	56	76	67	-30.20	-20.70	0.685430463576159	6	3-8,74-69;10-16,67-61;18-21,59-56	1-2,76-75[UP5];9-9,68-68[SIL];17-17,60-60[SIL]	((((.(((((((.((((((..&..)))))).))))))).))))	CUUCCGAUUGGAUAAUAGAUU&UUUCUAUUUUCCAAUCCGAAG	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN30831_c0_g1_67_TPlot.pdf
TRINITY_DN3083_c0_g1:590	si_a475	TRINITY_DN3083_c0_g1	579	599	590	-23.50	-17.40	0.740425531914894	9.5	2-10,598-590;12-19,588-581	1-1,599-599[UP5];11-11,589-589[SIL];20-21,580-579[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	CCCUAUGUAGGGAUGGUUACC&UGUAAUUAUUGUUAUAUAGAA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN3083_c0_g1_590_TPlot.pdf
TRINITY_DN3083_c0_g1:592	si_a473	TRINITY_DN3083_c0_g1	581	601	592	-23.00	-16.60	0.721739130434783	10	4-12,598-590;14-21,588-581	1-3,601-599[UP5];13-13,589-589[SIL]	((((((((.(((((((((...&...))))))))).))))))))	CUAUGUAGGGAUGGUUACCAU&UAUGUAAUUAUUGUUAUAUAG	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN3083_c0_g1_592_TPlot.pdf
TRINITY_DN30848_c0_g1:1048	si_s99	TRINITY_DN30848_c0_g1	1036	1057	1048	-34.60	-22.50	0.65028901734104	8.5	1-6,1057-1052;8-11,1050-1047;12-19,1045-1038	7-7,1051-1051[SIL];x-x,1046-1046[BULt];20-21,1037-1036[UP3]	..((((((((.((((.((((((&)))))).))))-))))))))..	CAUUCCGAUCUCGAGUCGGAGA&UCUUCGCUUCG-GAUUGGAAAA	4	0.999971501982316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN30848_c0_g1_1048_TPlot.pdf
TRINITY_DN30848_c0_g1:910	si_s91	TRINITY_DN30848_c0_g1	899	923	910	-34.70	-23.40	0.674351585014409	14	3-8,921-916;9-20,911-900	1-2,923-922[UP5];x-x,915-912[BULt];21-21,899-899[UP3]	.((((((((((((....((((((..&..))))))----)))))))))))).	CUCGGAGCGAAGAGCAAAGAAGGCG&UUUCUUCU----UCUUCGCUUCGGA	4	0.999999999997331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN30848_c0_g1_910_TPlot.pdf
TRINITY_DN30848_c0_g1:911	si_s90	TRINITY_DN30848_c0_g1	900	921	911	-35.30	-24.90	0.705382436260623	7	1-7,921-915;9-21,912-900	8-8,914-913[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	UCGGAGCGAAGAGCAAAGAAGG&CUUUCUU-CUUCUUCGCUUCGG	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN30848_c0_g1_911_TPlot.pdf
TRINITY_DN30848_c0_g1:932	si_s631	TRINITY_DN30848_c0_g1	920	941	932	-36.00	-24.10	0.669444444444445	9	1-10,941-932;12-18,930-924;19-21,922-920	11-11,931-931[SIL];x-x,923-923[BULt]	(((.(((((((.((((((((((&)))))))))).)))))))-)))	GGCGGAGCGCUGAUGGGGAGAU&AUCUUUUCGUAGGCGUUU-GCC	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN30848_c0_g1_932_TPlot.pdf
TRINITY_DN3085_c0_g1:5520	si_s89	TRINITY_DN3085_c0_g1	5505	5529	5520	-35.30	-26.80	0.759206798866856	7	2-15,5528-5515;16-21,5510-5505	1-1,5529-5529[UP5];x-x,5514-5511[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	CGAAGUUGAAGGAGAAGAAGAGAGA&CCUUUCUUCUUCUUC----GCUUCG	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3085_c0_g1_5520_TPlot.pdf
TRINITY_DN3085_c0_g1:5524	si_s82	TRINITY_DN3085_c0_g1	5513	5531	5524	-28.90	-19.30	0.667820069204152	6.5	2-8,5530-5524;11-21,5523-5513	1-1,5531-5531[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	AAGGAGAAGAA--GAGAGAAC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3085_c0_g1_5524_TPlot.pdf
TRINITY_DN30860_c0_g1:387	si_a33	TRINITY_DN30860_c0_g1	375	396	387	-37.80	-24.76	0.655026455026455	10	1-4,396-393;9-18,388-379;19-21,377-375	5-8,392-389[SIL];x-x,378-378[BULt]	(((.((((((((((....((((&))))....))))))))))-)))	GACGCUACCGGUCUCUCCGCUA&UAGUUCUAAGACCGGUAG-GUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a33_TRINITY_DN30860_c0_g1_387_TPlot.pdf
TRINITY_DN30861_c0_g2:343	si_s85	TRINITY_DN30861_c0_g2	332	352	343	-33.80	-29.70	0.878698224852071	6	1-10,352-343;12-21,341-332	11-11,342-342[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	GCGGAGAGGACGAAGGGGGAG&CUUUCCUUUCUUCUUCUUCGC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN30861_c0_g2_343_TPlot.pdf
TRINITY_DN30861_c0_g2:345	si_s83	TRINITY_DN30861_c0_g2	334	354	345	-30.90	-26.50	0.857605177993528	5	1-12,354-343;14-21,341-334	13-13,342-342[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAGAGGACGAAGGGGGAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN30861_c0_g2_345_TPlot.pdf
TRINITY_DN30861_c0_g2:353	si_s75	TRINITY_DN30861_c0_g2	342	363	353	-24.00	-18.90	0.7875	7.5	1-6,363-358;7-20,356-343	x-x,357-357[BULt];21-21,342-342[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	CGAAGGGGGAGAAGGCGAAAUA&UAUUUU-UUUUCUUUCCUUUCU	4	0.999991030208567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30861_c0_g2_353_TPlot.pdf
TRINITY_DN30861_c0_g2:358	si_a551	TRINITY_DN30861_c0_g2	347	367	358	-31.60	-20.70	0.65506329113924	9.5	4-10,364-358;12-13,356-355;15-21,353-347	1-3,367-365[UP5];11-11,357-357[SIL];14-14,354-354[SIL]	(((((((.((.(((((((...&...))))))).)).)))))))	GGGGAGAAGGCGAAAUAGUUA&AAUCUAUUUCUUUAUCUCCCC	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN30861_c0_g2_358_TPlot.pdf
TRINITY_DN3087_c0_g1:3694	si_s379	TRINITY_DN3087_c0_g1	3683	3704	3694	-42.50	-30.80	0.724705882352941	8.5	1-6,3704-3699;7-16,3697-3688	x-x,3698-3698[BULt];17-21,3687-3683[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	UCAGCGGGCGGAUACAGCGAGC&GCUCGC-GUGUCCGCCUUACAU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN3087_c0_g1_3694_TPlot.pdf
TRINITY_DN3087_c0_g1:3696	si_s377	TRINITY_DN3087_c0_g1	3685	3706	3696	-44.10	-31.20	0.707482993197279	9.5	3-8,3704-3699;9-18,3697-3688	1-2,3706-3705[UP5];x-x,3698-3698[BULt];19-21,3687-3685[UP3]	...((((((((((.((((((..&..))))))-))))))))))...	AGCGGGCGGAUACAGCGAGCUU&UCGCUCGC-GUGUCCGCCUUAC	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN3087_c0_g1_3696_TPlot.pdf
TRINITY_DN3087_c0_g1:3697	si_s376	TRINITY_DN3087_c0_g1	3686	3707	3697	-42.50	-31.20	0.734117647058824	10.5	4-9,3704-3699;10-19,3697-3688	1-3,3707-3705[UP5];x-x,3698-3698[BULt];20-21,3687-3686[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	GCGGGCGGAUACAGCGAGCUUG&AUCGCUCGC-GUGUCCGCCUUA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN3087_c0_g1_3697_TPlot.pdf
TRINITY_DN30889_c0_g1:127	si_a785	TRINITY_DN30889_c0_g1	116	137	127	-25.90	-19.90	0.768339768339768	5.5	2-9,136-129;11-21,126-116	1-1,137-137[UP5];10-10,128-127[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GAAAAUGGAAACUAUAGAAGAC&CUCUUCUAU-UUUUCUAUUUUC	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN30889_c0_g1_127_TPlot.pdf
TRINITY_DN3088_c0_g1:343	si_s75	TRINITY_DN3088_c0_g1	332	352	343	-24.00	-16.30	0.679166666666667	10	5-19,348-334	1-4,352-349[UP5];20-21,333-332[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAAGGAAAGAAAAAGUUCC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3088_c0_g1_343_TPlot.pdf
TRINITY_DN3088_c0_g1:344	si_s74	TRINITY_DN3088_c0_g1	333	353	344	-25.00	-16.30	0.652	11	6-20,348-334	1-5,353-349[UP5];21-21,333-333[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAGGAAAGAAAAAGUUCCA&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3088_c0_g1_344_TPlot.pdf
TRINITY_DN3088_c0_g1:345	si_s73	TRINITY_DN3088_c0_g1	334	354	345	-24.00	-16.30	0.679166666666667	12	7-21,348-334	1-6,354-349[UP5]	(((((((((((((((......&......)))))))))))))))	AAAGGAAAGAAAAAGUUCCAG&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3088_c0_g1_345_TPlot.pdf
TRINITY_DN3088_c0_g1:4640	si_a410	TRINITY_DN3088_c0_g1	4629	4649	4640	-17.80	-12.00	0.674157303370786	10	1-14,4649-4636	15-21,4635-4629[UP3]	.......((((((((((((((&)))))))))))))).......	UGAUUAGAAAUGUGAACGAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999997041	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3088_c0_g1_4640_TPlot.pdf
TRINITY_DN308_c0_g1:604	si_s78	TRINITY_DN308_c0_g1	593	613	604	-26.20	-17.60	0.67175572519084	4	1-11,613-603;14-21,600-593	12-13,602-601[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AGAAGAAAAUAAAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN308_c0_g1_604_TPlot.pdf
TRINITY_DN308_c0_g1:605	si_s77	TRINITY_DN308_c0_g1	594	614	605	-25.50	-17.20	0.674509803921569	3	1-12,614-603;15-21,600-594	13-14,602-601[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAAAUAAAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN308_c0_g1_605_TPlot.pdf
TRINITY_DN308_c0_g1:626	si_a73	TRINITY_DN308_c0_g1	615	635	626	-21.90	-14.80	0.675799086757991	9	2-4,634-632;7-8,629-628;10-21,626-615	1-1,635-635[UP5];5-6,631-630[SIL];9-9,627-627[SIL]	((((((((((((.((..(((.&.)))..)).))))))))))))	GAUGAUGAAGAAGAAGAUGAU&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999083711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN308_c0_g1_626_TPlot.pdf
TRINITY_DN308_c0_g1:629	si_s86	TRINITY_DN308_c0_g1	618	642	629	-32.90	-21.70	0.659574468085106	13	1-7,642-636;8-19,631-620	x-x,635-632[BULt];20-21,619-618[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	GAUGAAGAAGAAGAUGAUGAGGAGG&UUUCCUU----UCUUCUUCUUCGCU	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN308_c0_g1_629_TPlot.pdf
TRINITY_DN308_c0_g1:631	si_s84	TRINITY_DN308_c0_g1	620	644	631	-32.30	-21.80	0.674922600619195	15	3-9,642-636;10-20,631-621	1-2,644-643[UP5];x-x,635-632[BULt];21-21,620-620[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	UGAAGAAGAAGAUGAUGAGGAGGCU&UCUUUCCUU----UCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN308_c0_g1_631_TPlot.pdf
TRINITY_DN30906_c0_g1:251	si_a24	TRINITY_DN30906_c0_g1	240	260	251	-24.20	-15.90	0.65702479338843	10.5	5-18,256-243;21-21,240-240	1-4,260-257[UP5];19-20,242-241[SIL]	(..((((((((((((((....&....))))))))))))))..)	GGAUUAGAGCUAAAAGUCAAG&AUUUAUUUUUAGUUCUAAGAC	3	0.999985974189315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN30906_c0_g1_251_TPlot.pdf
TRINITY_DN30906_c0_g1:253	si_a22	TRINITY_DN30906_c0_g1	242	266	253	-23.50	-16.40	0.697872340425532	12.5	1-6,266-261;7-20,256-243	x-x,260-257[BULt];21-21,242-242[UP3]	.((((((((((((((....((((((&))))))----)))))))))))))).	AUUAGAGCUAAAAGUCAAGGAAUGG&CUAUUU----AUUUUUAGUUCUAAG	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN30906_c0_g1_253_TPlot.pdf
TRINITY_DN30906_c0_g1:254	si_a21	TRINITY_DN30906_c0_g1	243	267	254	-24.30	-16.40	0.674897119341564	12.5	2-7,266-261;8-21,256-243	1-1,267-267[UP5];x-x,260-257[BULt]	((((((((((((((....((((((.&.))))))----))))))))))))))	UUAGAGCUAAAAGUCAAGGAAUGGC&CCUAUUU----AUUUUUAGUUCUAA	0	0.233298493684953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN30906_c0_g1_254_TPlot.pdf
TRINITY_DN30906_c0_g1:255	si_a20	TRINITY_DN30906_c0_g1	244	267	255	-26.70	-17.80	0.666666666666667	12.5	1-3,267-265;5-8,264-261;9-21,256-244	4-4,x-x[BULq];x-x,260-257[BULt]	(((((((((((((....((((-(((&))).))))----)))))))))))))	UAGAGCUAAAAGUCAAGGAAU-GGC&GCCUAUUU----AUUUUUAGUUCUA	2	0.999883869540772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN30906_c0_g1_255_TPlot.pdf
TRINITY_DN30906_c0_g1:261	si_a18	TRINITY_DN30906_c0_g1	246	269	261	-26.30	-17.20	0.653992395437262	12.5	1-5,269-265;7-10,264-261;11-21,256-246	6-6,x-x[BULq];x-x,260-257[BULt]	(((((((((((....((((-(((((&))))).))))----)))))))))))	GAGCUAAAAGUCAAGGAAU-GGCUU&AAGCCUAUUU----AUUUUUAGUUC	3	0.999999625720291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN30906_c0_g1_261_TPlot.pdf
TRINITY_DN30907_c0_g2:449	si_a783	TRINITY_DN30907_c0_g2	438	458	449	-24.70	-16.50	0.668016194331984	10	1-15,458-444	16-21,443-438[UP3]	......(((((((((((((((&)))))))))))))))......	UGACGAGGAGGUAGAGGAGUU&AACUCUUCUAUUUUUCUAUUU	2	0.999999999656971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN30907_c0_g2_449_TPlot.pdf
TRINITY_DN3090_c0_g1:1641	si_s67	TRINITY_DN3090_c0_g1	1629	1650	1641	-25.60	-18.00	0.703125	9.5	1-2,1650-1649;5-18,1646-1633;19-20,1631-1630	3-4,1648-1647[SIL];x-x,1632-1632[BULt];21-21,1629-1629[UP3]	.((.((((((((((((((..((&))..))))))))))))))-)).	CGGAAGAAGAAAUGGAGGCGGC&GCAACUUCUAUUUUUUUU-CUU	4	0.999995171230596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3090_c0_g1_1641_TPlot.pdf
TRINITY_DN3090_c0_g1:230	si_s89	TRINITY_DN3090_c0_g1	219	239	230	-35.30	-23.00	0.651558073654391	10	5-19,235-221	1-4,239-236[UP5];20-21,220-219[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAGGCGGAGAAGAAGAUCUU&CCUUUCUUCUUCUUCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3090_c0_g1_230_TPlot.pdf
TRINITY_DN3090_c0_g1:232	si_s87	TRINITY_DN3090_c0_g1	221	241	232	-32.90	-23.00	0.699088145896657	12	7-21,235-221	1-6,241-236[UP5]	(((((((((((((((......&......)))))))))))))))	AGGCGGAGAAGAAGAUCUUCA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999983584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3090_c0_g1_232_TPlot.pdf
TRINITY_DN3090_c0_g1:2373	si_a138	TRINITY_DN3090_c0_g1	2362	2382	2373	-26.30	-19.40	0.737642585551331	12	6-21,2377-2362	1-5,2382-2378[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGCAACAGCGAUUGGUCAGAA&UAGUAAUUAAUCGUUGUUGUU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN3090_c0_g1_2373_TPlot.pdf
TRINITY_DN3090_c0_g1:364	si_s77	TRINITY_DN3090_c0_g1	353	373	364	-25.50	-16.60	0.650980392156863	11	4-9,370-365;11-15,363-359;17-21,357-353	1-3,373-371[UP5];10-10,364-364[SIL];16-16,358-358[SIL]	(((((.(((((.((((((...&...)))))).))))).)))))	GAAGAUAGGGAUGAGGAAUGC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3090_c0_g1_364_TPlot.pdf
TRINITY_DN3090_c0_g1:760	si_a788	TRINITY_DN3090_c0_g1	749	772	760	-24.80	-19.30	0.778225806451613	9.5	1-4,772-769;5-21,765-749	x-x,768-766[BULt]	(((((((((((((((((...((((&))))---)))))))))))))))))	UUGGAAGAUGGGGAAAUUCAAGAA&UUCU---AUUUUUCUAUUUUCCAA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3090_c0_g1_760_TPlot.pdf
TRINITY_DN3091_c0_g1:2860	si_a627	TRINITY_DN3091_c0_g1	2848	2869	2860	-29.50	-19.50	0.661016949152542	4.5	1-2,2869-2868;4-13,2866-2857;14-21,2855-2848	3-3,2867-2867[SIL];x-x,2856-2856[BULt]	((((((((.((((((((((.((&)).))))))))))-))))))))	AAAAAAUCUGACAUAAUGCUCU&GGCGUAUUAUGUC-GAUUUUUU	2	0.999729288865422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN3091_c0_g1_2860_TPlot.pdf
TRINITY_DN3091_c0_g1:381	si_a493	TRINITY_DN3091_c0_g1	370	390	381	-29.50	-19.40	0.657627118644068	11.5	4-6,387-385;8-21,383-370	1-3,390-388[UP5];7-7,384-384[SIL]	((((((((((((((.(((...&...))).))))))))))))))	AAGACGAAGAAUGGGGUGACG&GAAUAUGUCGUUUUUCGUCUU	4	0.999999913764069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN3091_c0_g1_381_TPlot.pdf
TRINITY_DN3091_c0_g1:382	si_s812	TRINITY_DN3091_c0_g1	370	391	382	-26.40	-17.30	0.65530303030303	11	1-10,391-382;11-15,380-376	x-x,381-381[BULt];16-21,375-370[UP3]	......(((((.((((((((((&))))))))))-)))))......	AAGACGAAGAAUGGGGUGACGA&UCGUUACCUU-UUCUUAAUAAU	4	0.99999927711518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN3091_c0_g1_382_TPlot.pdf
TRINITY_DN3092_c0_g1:1417	si_s68	TRINITY_DN3092_c0_g1	1407	1426	1417	-23.10	-15.10	0.653679653679654	6.5	3-11,1424-1416;14-21,1414-1407	1-2,1426-1425[UP5];12-13,1415-1415[AILq]	((((((((.-(((((((((..&..)))))))))..))))))))	AAAGGAAAU-AAUAGAAGUAA&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3092_c0_g1_1417_TPlot.pdf
TRINITY_DN3092_c0_g1:1559	si_a459	TRINITY_DN3092_c0_g1	1547	1568	1559	-23.20	-15.50	0.668103448275862	8	1-10,1568-1559;12-16,1557-1553;17-20,1551-1548	11-11,1558-1558[SIL];x-x,1552-1552[BULt];21-21,1547-1547[UP3]	.((((.(((((.((((((((((&)))))))))).)))))-)))).	AUACAUUAUUACAUGUAGCGGC&GUUGUUAUAUAUAAUA-UGUAA	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN3092_c0_g1_1559_TPlot.pdf
TRINITY_DN3092_c0_g1:1818	si_s82	TRINITY_DN3092_c0_g1	1807	1828	1818	-28.90	-20.20	0.698961937716263	4	1-8,1828-1821;9-15,1819-1813;17-21,1811-1807	x-x,1820-1820[BULt];16-16,1812-1812[SIL]	(((((.(((((((.((((((((&))))))))-))))))).)))))	AAGAGAGAGAAAGAGAAAGAAA&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3092_c0_g1_1818_TPlot.pdf
TRINITY_DN3092_c0_g1:1821	si_s74	TRINITY_DN3092_c0_g1	1809	1830	1821	-25.00	-19.30	0.772	5.5	1-2,1830-1829;4-16,1827-1815;17-21,1813-1809	3-3,1828-1828[SIL];x-x,1814-1814[BULt]	(((((.(((((((((((((.((&)).)))))))))))))-)))))	GAGAGAGAAAGAGAAAGAAAAG&CUAUUUUUUUUCUUUC-CUUUC	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3092_c0_g1_1821_TPlot.pdf
TRINITY_DN3092_c0_g1:1825	si_s76	TRINITY_DN3092_c0_g1	1813	1834	1825	-23.60	-20.50	0.86864406779661	3.5	2-14,1833-1821;15-21,1819-1813	1-1,1834-1834[UP5];x-x,1820-1820[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	GAGAAAGAGAAAGAAAAGAAAA&AUUUUUUUUCUUUC-CUUUCUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3092_c0_g1_1825_TPlot.pdf
TRINITY_DN3092_c0_g1:1826	si_s69	TRINITY_DN3092_c0_g1	1815	1835	1826	-23.40	-16.10	0.688034188034188	8.5	4-7,1832-1829;9-21,1827-1815	1-3,1835-1833[UP5];8-8,1828-1828[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAGAAAGAAAAGAAAAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3092_c0_g1_1826_TPlot.pdf
TRINITY_DN3093_c0_g1:2151	si_s888	TRINITY_DN3093_c0_g1	2139	2160	2151	-26.80	-18.80	0.701492537313433	8.5	3-12,2158-2149;13-20,2147-2140	1-2,2160-2159[UP5];x-x,2148-2148[BULt];21-21,2139-2139[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	UGGAGAAAGUUCUGUUUAUUCA&AAAAUAAAUAGG-CUUUCUCUU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN3093_c0_g1_2151_TPlot.pdf
TRINITY_DN3093_c0_g1:2554	si_a80	TRINITY_DN3093_c0_g1	2543	2563	2554	-22.10	-14.40	0.65158371040724	9	2-14,2562-2550;17-19,2547-2545	1-1,2563-2563[UP5];15-16,2549-2548[SIL];20-21,2544-2543[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	ACUUCGAAAUGAUGAAGGGCC&UGUUUUUCAUUAUUAAGAAAA	3	0.999999954412122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3093_c0_g1_2554_TPlot.pdf
TRINITY_DN30942_c0_g1:38	si_s79	TRINITY_DN30942_c0_g1	26	47	38	-26.20	-17.30	0.66030534351145	6.5	1-15,47-33;16-18,31-29	x-x,32-32[BULt];19-21,28-26[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	UUUAAGCGAAGGAAAGGAGAAA&UUUUUUCUUUCCUUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN30942_c0_g1_38_TPlot.pdf
TRINITY_DN30969_c0_g2:193	si_s823	TRINITY_DN30969_c0_g2	183	202	193	-22.20	-14.70	0.662162162162162	7	1-14,202-189;17-18,187-186	15-16,188-188[AILq];19-21,185-183[UP3]	...((.-((((((((((((((&))))))))))))))..))...	UUAUGG-UUUCAUUGUUAGGA&UCUUAAUAAUGAAAAACAAUU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN30969_c0_g2_193_TPlot.pdf
TRINITY_DN30971_c0_g1:1831	si_s69	TRINITY_DN30971_c0_g1	1820	1840	1831	-23.40	-16.30	0.696581196581197	5.5	2-9,1839-1832;11-17,1830-1824;19-21,1822-1820	1-1,1840-1840[UP5];10-10,1831-1831[SIL];18-18,1823-1823[SIL]	(((.(((((((.((((((((.&.)))))))).))))))).)))	GAACGGAAAGACAUAGAAGUG&AACUUCUAUUUUUUUUCUUUC	2	0.999999999996394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN30971_c0_g1_1831_TPlot.pdf
TRINITY_DN30971_c0_g1:1834	si_s66	TRINITY_DN30971_c0_g1	1823	1842	1834	-26.30	-18.10	0.688212927756654	5	1-4,1842-1839;6-12,1838-1832;14-20,1830-1824	5-5,x-x[BULq];13-13,1831-1831[SIL];21-21,1823-1823[UP3]	.(((((((.(((((((-((((&)))).))))))).))))))).	CGGAAAGACAUAGAAG-UGCU&AGCAACUUCUAUUUUUUUUCU	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN30971_c0_g1_1834_TPlot.pdf
TRINITY_DN30971_c0_g1:1835	si_s65	TRINITY_DN30971_c0_g1	1824	1843	1835	-26.00	-19.10	0.734615384615385	4	1-5,1843-1839;7-13,1838-1832;15-21,1830-1824	6-6,x-x[BULq];14-14,1831-1831[SIL]	(((((((.(((((((-(((((&))))).))))))).)))))))	GGAAAGACAUAGAAG-UGCUA&UAGCAACUUCUAUUUUUUUUC	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN30971_c0_g1_1835_TPlot.pdf
TRINITY_DN30971_c0_g1:288	si_a141	TRINITY_DN30971_c0_g1	277	297	288	-23.80	-15.60	0.65546218487395	12	5-18,293-280	1-4,297-294[UP5];19-21,279-277[UP3]	...((((((((((((((....&....))))))))))))))...	AAUAACGAUAGCGAUUAUAGC&UAAUUAAUCGUUGUUGUUUUA	2	0.999999998333509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN30971_c0_g1_288_TPlot.pdf
TRINITY_DN30971_c0_g1:505	si_a328	TRINITY_DN30971_c0_g1	488	513	505	-30.10	-19.90	0.661129568106312	10.5	1-9,513-505;11-17,504-498;18-21,491-488	10-10,x-x[BULq];x-x,497-492[BULt]	((((......(((((((-(((((((((&))))))))).)))))))------))))	GGGAGAAAUCCAGGGAA-AAAGAAGUC&GAUUUUUUUAUUCCUUG------UCCC	4	0.999999884867925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN30971_c0_g1_505_TPlot.pdf
TRINITY_DN30971_c0_g1:528	si_s82	TRINITY_DN30971_c0_g1	517	538	528	-28.90	-20.40	0.705882352941176	4.5	1-8,538-531;9-15,529-523;17-21,521-517	x-x,530-530[BULt];16-16,522-522[SIL]	(((((.(((((((.((((((((&))))))))-))))))).)))))	GAGAAAAAGAAAGAGAAAGAGA&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN30971_c0_g1_528_TPlot.pdf
TRINITY_DN30971_c0_g1:533	si_s78	TRINITY_DN30971_c0_g1	521	542	533	-26.20	-19.40	0.740458015267176	5	1-12,542-531;13-19,529-523	x-x,530-530[BULt];20-21,522-521[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	AAAAGAAAGAGAAAGAGAAAAA&UUUUUUUCUUUC-CUUUCUUCU	4	0.999999999999948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN30971_c0_g1_533_TPlot.pdf
TRINITY_DN30971_c0_g1:540	si_s72	TRINITY_DN30971_c0_g1	527	549	540	-24.10	-17.10	0.70954356846473	6	2-11,548-539;12-18,537-531;19-21,529-527	1-1,549-549[UP5];x-x,538-538[BULt];x-x,530-530[BULt]	(((.(((((((.((((((((((.&.))))))))))-)))))))-)))	AAGAGAAAGAGAAAAAAGUAGAU&UUCUAUUUUUU-UUCUUUC-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN30971_c0_g1_540_TPlot.pdf
TRINITY_DN3098_c0_g1:1247	si_s72	TRINITY_DN3098_c0_g1	1235	1256	1247	-24.10	-15.70	0.651452282157676	9	2-4,1255-1253;6-17,1251-1240;18-21,1238-1235	1-1,1256-1256[UP5];5-5,1252-1252[SIL];x-x,1239-1239[BULt]	((((.((((((((((((.(((.&.))).))))))))))))-))))	AGGGCGAAGAAAGAGGACGGAG&UUCUAUUUUUUUUCUUU-CCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3098_c0_g1_1247_TPlot.pdf
TRINITY_DN3098_c0_g1:1248	si_s86	TRINITY_DN3098_c0_g1	1237	1257	1248	-32.90	-23.70	0.720364741641337	7.5	1-5,1257-1253;7-11,1251-1247;13-21,1245-1237	6-6,1252-1252[SIL];12-12,1246-1246[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	GGCGAAGAAAGAGGACGGAGA&UUUCCUUUCUUCUUCUUCGCU	3	0.99999954173757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3098_c0_g1_1248_TPlot.pdf
TRINITY_DN3098_c0_g1:1249	si_s85	TRINITY_DN3098_c0_g1	1238	1258	1249	-33.80	-22.60	0.668639053254438	7	2-6,1257-1253;8-12,1251-1247;14-21,1245-1238	1-1,1258-1258[UP5];7-7,1252-1252[SIL];13-13,1246-1246[SIL]	((((((((.(((((.(((((.&.))))).))))).))))))))	GCGAAGAAAGAGGACGGAGAA&CUUUCCUUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3098_c0_g1_1249_TPlot.pdf
TRINITY_DN3098_c0_g1:1299	si_s79	TRINITY_DN3098_c0_g1	1287	1308	1299	-26.20	-18.30	0.698473282442748	5.5	1-14,1308-1295;16-18,1293-1291;19-21,1289-1287	15-15,1294-1294[SIL];x-x,1290-1290[BULt]	(((.(((.((((((((((((((&)))))))))))))).)))-)))	AAGUGAGCGAGGAGAGGAAAAG&UUUUUUCUUUCCUUUCUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3098_c0_g1_1299_TPlot.pdf
TRINITY_DN3098_c0_g1:1301	si_s77	TRINITY_DN3098_c0_g1	1290	1310	1301	-25.50	-17.40	0.68235294117647	9	3-16,1308-1295;18-20,1293-1291	1-2,1310-1309[UP5];17-17,1294-1294[SIL];21-21,1290-1290[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	UGAGCGAGGAGAGGAAAAGUG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3098_c0_g1_1301_TPlot.pdf
TRINITY_DN3098_c0_g1:1302	si_s76	TRINITY_DN3098_c0_g1	1291	1311	1302	-23.60	-17.40	0.73728813559322	10	4-17,1308-1295;19-21,1293-1291	1-3,1311-1309[UP5];18-18,1294-1294[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GAGCGAGGAGAGGAAAAGUGA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3098_c0_g1_1302_TPlot.pdf
TRINITY_DN3098_c0_g1:1303	si_s75	TRINITY_DN3098_c0_g1	1292	1312	1303	-24.00	-16.30	0.679166666666667	11	5-18,1308-1295;20-21,1293-1292	1-4,1312-1309[UP5];19-19,1294-1294[SIL]	((.((((((((((((((....&....)))))))))))))).))	AGCGAGGAGAGGAAAAGUGAC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3098_c0_g1_1303_TPlot.pdf
TRINITY_DN3098_c0_g1:536	si_a759	TRINITY_DN3098_c0_g1	524	545	536	-32.60	-21.20	0.650306748466258	7.5	1-4,545-542;7-15,539-531;16-20,529-525	5-6,541-540[SIL];x-x,530-530[BULt];21-21,524-524[UP3]	.(((((.(((((((((..((((&))))..)))))))))-))))).	GUAAUCGAAAAACCUAUUGGAG&CUCCUUUGGGUUUUU-GAUUGA	3	0.999999998480056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN3098_c0_g1_536_TPlot.pdf
TRINITY_DN3098_c0_g1:537	si_a758	TRINITY_DN3098_c0_g1	525	546	537	-34.00	-23.60	0.694117647058824	6.5	1-5,546-542;8-16,539-531;17-21,529-525	6-7,541-540[SIL];x-x,530-530[BULt]	(((((.(((((((((..(((((&)))))..)))))))))-)))))	UAAUCGAAAAACCUAUUGGAGG&CCUCCUUUGGGUUUUU-GAUUG	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN3098_c0_g1_537_TPlot.pdf
TRINITY_DN3098_c0_g1:539	si_a756	TRINITY_DN3098_c0_g1	527	548	539	-33.10	-23.90	0.722054380664652	7	2-7,547-542;10-18,539-531;19-21,529-527	1-1,548-548[UP5];8-9,541-540[SIL];x-x,530-530[BULt]	(((.(((((((((..((((((.&.))))))..)))))))))-)))	AUCGAAAAACCUAUUGGAGGUG&AACCUCCUUUGGGUUUUU-GAU	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3098_c0_g1_539_TPlot.pdf
TRINITY_DN30990_c0_g2:150	si_a402	TRINITY_DN30990_c0_g2	139	160	150	-22.40	-15.40	0.6875	9	1-4,160-157;5-17,155-143	x-x,156-156[BULt];18-21,142-139[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	CUUUUGGACAGAACAGUCUCUA&UAGA-AUUGUUUUGUUUAUAUU	4	0.999999696230004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN30990_c0_g2_150_TPlot.pdf
TRINITY_DN30990_c0_g2:154	si_a398	TRINITY_DN30990_c0_g2	143	164	154	-22.40	-19.90	0.888392857142857	4.5	1-8,164-157;9-21,155-143	x-x,156-156[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	UGGACAGAACAGUCUCUAUAUU&AAUAUAGA-AUUGUUUUGUUUA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN30990_c0_g2_154_TPlot.pdf
TRINITY_DN30990_c0_g2:159	si_a394	TRINITY_DN30990_c0_g2	147	168	159	-24.30	-16.10	0.662551440329218	10	5-12,164-157;13-21,155-147	1-4,168-165[UP5];x-x,156-156[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	CAGAACAGUCUCUAUAUUAAAU&UAAGAAUAUAGA-AUUGUUUUG	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN30990_c0_g2_159_TPlot.pdf
TRINITY_DN30992_c0_g2:413	si_s681	TRINITY_DN30992_c0_g2	402	422	413	-25.10	-17.40	0.693227091633466	6	1-14,422-409;17-20,406-403	15-16,408-407[SIL];21-21,402-402[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	CGGUUUCACUCAUGUUUUUGU&AUAGAAACAUGAGUUUAAUUA	0	0.0377903026219647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN30992_c0_g2_413_TPlot.pdf
TRINITY_DN30992_c1_g1:475	si_s811	TRINITY_DN30992_c1_g1	464	484	475	-26.40	-17.60	0.666666666666667	11	2-3,483-482;5-17,480-468	1-1,484-484[UP5];4-4,481-481[SIL];18-21,467-464[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	UAUGUAGGGGAAGGUGGGGAU&UUCGUUACCUUUUCUUAAUAA	4	0.999999435725072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN30992_c1_g1_475_TPlot.pdf
TRINITY_DN30992_c1_g1:494	si_s705	TRINITY_DN30992_c1_g1	483	508	494	-31.40	-20.82	0.663057324840764	16	1-7,508-502;9-12,495-492;15-20,489-484	8-8,501-496[AILt];13-14,491-490[SIL];21-21,483-483[UP3]	.((((((..((((......(((((((&)))))))-----.))))..)))))).	AUCCCUGGGCACUUUUUCUGUAAAUC&GAUUUAU-----UAGUGAACAGGGAA	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN30992_c1_g1_494_TPlot.pdf
TRINITY_DN309_c0_g1:2816	si_a487	TRINITY_DN309_c0_g1	2801	2825	2816	-24.80	-17.60	0.709677419354839	12	1-12,2825-2814;13-21,2809-2801	x-x,2813-2810[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	GGAAACGACUAAAGUAUUUUGUAUA&UAUAUAGAAUAU----GUCGUUUUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN309_c0_g1_2816_TPlot.pdf
TRINITY_DN309_c0_g1:2817	si_a486	TRINITY_DN309_c0_g1	2802	2826	2817	-24.90	-18.20	0.730923694779116	7	1-13,2826-2814;14-21,2809-2802	x-x,2813-2810[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	GAAACGACUAAAGUAUUUUGUAUAA&UUAUAUAGAAUAU----GUCGUUUU	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN309_c0_g1_2817_TPlot.pdf
TRINITY_DN309_c0_g1:352	si_a31	TRINITY_DN309_c0_g1	341	361	352	-35.10	-23.50	0.66951566951567	12	5-19,357-343	1-4,361-358[UP5];20-21,342-341[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGUGCUGGUCUUAGGGCAGCA&UUUAGUUCUAAGACCGGUAGG	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a31_TRINITY_DN309_c0_g1_352_TPlot.pdf
TRINITY_DN309_c0_g1:356	si_a27	TRINITY_DN309_c0_g1	345	365	356	-30.30	-20.80	0.686468646864686	17.5	9-21,357-345	1-8,365-358[UP5]	(((((((((((((........&........)))))))))))))	CUGGUCUUAGGGCAGCAUAUG&UAUUUUUAGUUCUAAGACCGG	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN309_c0_g1_356_TPlot.pdf
TRINITY_DN309_c0_g1:46	si_s112	TRINITY_DN309_c0_g1	35	55	46	-24.80	-16.20	0.653225806451613	8	4-8,52-48;10-20,46-36	1-3,55-53[UP5];9-9,47-47[SIL];21-21,35-35[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	AUCUAUUUUUCUUUUUUCAUU&UUGGAAAAUAGAAAAAUAGAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s112_TRINITY_DN309_c0_g1_46_TPlot.pdf
TRINITY_DN30_c0_g1:226	si_a635	TRINITY_DN30_c0_g1	216	235	226	-26.10	-18.50	0.708812260536398	7.5	3-15,233-221;17-19,220-218	1-2,235-234[UP5];16-16,x-x[BULq];20-21,217-216[UP3]	..(((-(((((((((((((..&..))))))))))))).)))..	GAUAC-CGAAAAGAUCGACGA&AUGUCGAUUUUUUUGAGUAAU	3	0.99970778833738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN30_c0_g1_226_TPlot.pdf
TRINITY_DN30_c0_g1:227	si_a634	TRINITY_DN30_c0_g1	217	236	227	-26.40	-18.50	0.700757575757576	8.5	4-16,233-221;18-20,220-218	1-3,236-234[UP5];17-17,x-x[BULq];21-21,217-217[UP3]	.(((-(((((((((((((...&...))))))))))))).))).	AUAC-CGAAAAGAUCGACGAA&UAUGUCGAUUUUUUUGAGUAA	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN30_c0_g1_227_TPlot.pdf
TRINITY_DN30_c0_g1:228	si_a633	TRINITY_DN30_c0_g1	218	237	228	-26.40	-18.30	0.693181818181818	9.5	5-17,233-221;19-21,220-218	1-4,237-234[UP5];18-18,x-x[BULq]	(((-(((((((((((((....&....))))))))))))).)))	UAC-CGAAAAGAUCGACGAAG&UUAUGUCGAUUUUUUUGAGUA	4	0.999969681393287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN30_c0_g1_228_TPlot.pdf
TRINITY_DN30_c0_g1:420	si_s73	TRINITY_DN30_c0_g1	407	430	420	-24.00	-15.70	0.654166666666667	8	1-3,430-428;5-15,425-415;16-21,412-407	4-4,427-426[AILt];x-x,414-413[BULt]	((((((..(((((((((((..(((&)))-.)))))))))))--))))))	AAAGGAUAAAGAAAAGAAACGGGA&UCU-AUUUUUUUUCUU--UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN30_c0_g1_420_TPlot.pdf
TRINITY_DN30_c0_g1:421	si_s72	TRINITY_DN30_c0_g1	408	430	421	-24.10	-15.90	0.659751037344398	7	1-4,430-427;6-16,425-415;17-21,412-408	5-5,426-426[SIL];x-x,414-413[BULt]	(((((..(((((((((((.((((&)))).)))))))))))--)))))	AAGGAUAAAGAAAAGAAACGGGA&UUCUAUUUUUUUUCUU--UCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN30_c0_g1_421_TPlot.pdf
TRINITY_DN30_c0_g1:470	si_s82	TRINITY_DN30_c0_g1	460	479	470	-28.90	-20.10	0.695501730103806	5	1-12,479-468;14-19,467-462	13-13,x-x[BULq];20-21,461-460[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	ACGAAGAA-AAGGGGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN30_c0_g1_470_TPlot.pdf
TRINITY_DN30_c0_g1:472	si_s80	TRINITY_DN30_c0_g1	462	481	472	-28.20	-19.90	0.705673758865248	6	3-14,479-468;16-21,467-462	1-2,481-480[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	GAAGAA-AAGGGGAAGAAACA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN30_c0_g1_472_TPlot.pdf
TRINITY_DN30_c0_g1:475	si_s77	TRINITY_DN30_c0_g1	462	484	475	-25.50	-17.50	0.686274509803922	12.5	6-15,479-470;16-21,467-462	1-5,484-480[UP5];x-x,469-468[BULt]	((((((..((((((((((.....&.....))))))))))--))))))	GAAGAAAAGGGGAAGAAACACAU&UUUUUUUUCUUUCCU--UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN30_c0_g1_475_TPlot.pdf
TRINITY_DN30_c0_g1:492	si_s96	TRINITY_DN30_c0_g1	481	501	492	-37.20	-24.40	0.655913978494624	8.5	1-15,501-487	16-21,486-481[UP3]	......(((((((((((((((&)))))))))))))))......	ACAUGACUGAGGCGGAGAAGA&UCUUCUUCGCUUCGGAUUGGA	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN30_c0_g1_492_TPlot.pdf
TRINITY_DN30_c0_g1:493	si_s95	TRINITY_DN30_c0_g1	482	502	493	-36.30	-24.80	0.683195592286501	8	1-16,502-487	17-21,486-482[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAUGACUGAGGCGGAGAAGAG&UUCUUCUUCGCUUCGGAUUGG	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN30_c0_g1_493_TPlot.pdf
TRINITY_DN30_c0_g1:495	si_s93	TRINITY_DN30_c0_g1	484	504	495	-34.80	-25.00	0.718390804597701	9	3-18,502-487	1-2,504-503[UP5];19-21,486-484[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGACUGAGGCGGAGAAGAGUA&UCUUCUUCUUCGCUUCGGAUU	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN30_c0_g1_495_TPlot.pdf
TRINITY_DN30_c0_g1:496	si_s92	TRINITY_DN30_c0_g1	485	505	496	-34.90	-25.00	0.716332378223496	10	4-19,502-487	1-3,505-503[UP5];20-21,486-485[UP3]	..((((((((((((((((...&...))))))))))))))))..	GACUGAGGCGGAGAAGAGUAU&UUCUUCUUCUUCGCUUCGGAU	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN30_c0_g1_496_TPlot.pdf
TRINITY_DN30_c0_g1:497	si_s91	TRINITY_DN30_c0_g1	486	506	497	-34.70	-25.00	0.720461095100865	11	5-20,502-487	1-4,506-503[UP5];21-21,486-486[UP3]	.((((((((((((((((....&....)))))))))))))))).	ACUGAGGCGGAGAAGAGUAUA&UUUCUUCUUCUUCGCUUCGGA	4	0.99976599203554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN30_c0_g1_497_TPlot.pdf
TRINITY_DN30_c0_g1:524	si_s75	TRINITY_DN30_c0_g1	512	533	524	-24.00	-15.90	0.6625	7	1-14,533-520;15-18,518-515	x-x,519-519[BULt];19-21,514-512[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	UUUAAGGAAGAGAGAAGAAAUG&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN30_c0_g1_524_TPlot.pdf
TRINITY_DN30_c0_g1:554	si_s70	TRINITY_DN30_c0_g1	538	563	554	-25.80	-17.20	0.666666666666667	10	1-6,563-558;9-17,555-547;18-21,541-538	7-8,557-556[SIL];x-x,546-542[BULt]	((((.....(((((((((..((((((&))))))..)))))))))-----))))	GGAAAAAAUGGGAAAAAAUGAGAAGU&ACUUCUAUUUUUUUUCU-----UUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN30_c0_g1_554_TPlot.pdf
TRINITY_DN30_c0_g1:718	si_s90	TRINITY_DN30_c0_g1	706	733	718	-35.30	-23.30	0.660056657223796	17	1-9,733-725;10-15,718-713;16-21,711-706	x-x,724-719[BULt];x-x,712-712[BULt]	((((((.((((((......(((((((((&)))))))))------))))))-))))))	CCGAGGAUGAGGGUUUCAAAGAGGAAAG&CUUUCUUCU------UCUUCG-CUUCGG	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN30_c0_g1_718_TPlot.pdf
TRINITY_DN30_c0_g1:969	si_a784	TRINITY_DN30_c0_g1	957	978	969	-24.70	-16.50	0.668016194331984	6	2-12,977-967;13-15,965-963;17-21,961-957	1-1,978-978[UP5];x-x,966-966[BULt];16-16,962-962[SIL]	(((((.(((.(((((((((((.&.)))))))))))-))).)))))	AGAAUCGAGCAAGUAGAAGAGC&ACUCUUCUAUUU-UUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN30_c0_g1_969_TPlot.pdf
TRINITY_DN30_c0_g1:979	si_s87	TRINITY_DN30_c0_g1	967	988	979	-32.90	-21.70	0.659574468085106	6.5	1-10,988-979;12-17,977-972;18-21,970-967	11-11,978-978[SIL];x-x,971-971[BULt]	((((.((((((.((((((((((&)))))))))).))))))-))))	AAGUAGAAGAGCGAGAAAGGGA&UUCCUUUCUUCUUCUUC-GCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN30_c0_g1_979_TPlot.pdf
TRINITY_DN30_c0_g1:981	si_s85	TRINITY_DN30_c0_g1	970	990	981	-33.80	-23.40	0.692307692307692	6.5	1-12,990-979;14-19,977-972	13-13,978-978[SIL];20-21,971-970[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	UAGAAGAGCGAGAAAGGGAGG&CUUUCCUUUCUUCUUCUUCGC	2	0.999998794399737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN30_c0_g1_981_TPlot.pdf
TRINITY_DN30_c0_g1:982	si_s84	TRINITY_DN30_c0_g1	971	991	982	-32.30	-24.80	0.767801857585139	5	1-13,991-979;15-20,977-972	14-14,978-978[SIL];21-21,971-971[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AGAAGAGCGAGAAAGGGAGGA&UCUUUCCUUUCUUCUUCUUCG	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN30_c0_g1_982_TPlot.pdf
TRINITY_DN30_c0_g1:983	si_s83	TRINITY_DN30_c0_g1	972	992	983	-30.90	-24.60	0.796116504854369	5	2-14,991-979;16-21,977-972	1-1,992-992[UP5];15-15,978-978[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	GAAGAGCGAGAAAGGGAGGAU&UUCUUUCCUUUCUUCUUCUUC	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN30_c0_g1_983_TPlot.pdf
TRINITY_DN30_c0_g1:984	si_s82	TRINITY_DN30_c0_g1	970	993	984	-28.90	-21.50	0.743944636678201	9	3-14,991-980;15-20,976-971	1-2,993-992[UP5];x-x,979-977[BULt];21-21,970-970[UP3]	.((((((...((((((((((((..&..))))))))))))---)))))).	UAGAAGAGCGAGAAAGGGAGGAUA&UUUCUUUCCUUUCU---UCUUCUU	4	0.999999999672527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN30_c0_g1_984_TPlot.pdf
TRINITY_DN30_c0_g1:988	si_s78	TRINITY_DN30_c0_g1	977	997	988	-26.20	-17.20	0.656488549618321	15.5	7-19,991-979	1-6,997-992[UP5];20-21,978-977[UP3]	..(((((((((((((......&......)))))))))))))..	GCGAGAAAGGGAGGAUAACAC&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN30_c0_g1_988_TPlot.pdf
TRINITY_DN31012_c0_g1:120	si_s791	TRINITY_DN31012_c0_g1	109	129	120	-28.50	-19.28	0.676491228070175	5.5	1-12,129-118;16-20,114-110	13-15,117-115[SIL];21-21,109-109[UP3]	.(((((...((((((((((((&))))))))))))...))))).	UGAUGACUAAUGAGCUUGUUU&AAACAAGCUCGUAUUUUAUCU	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN31012_c0_g1_120_TPlot.pdf
TRINITY_DN3101_c0_g2:1025	si_a628	TRINITY_DN3101_c0_g2	1014	1031	1025	-27.10	-18.00	0.664206642066421	12	1-6,1031-1026;10-19,1025-1016	7-9,x-x[BULq];20-21,1015-1014[UP3]	..((((((((((---((((((&))))))...))))))))))..	GUGGGAGUCGAC---GUGCGC&GCGUAUUAUGUCGAUUUUUUU	2	0.99984729171278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN3101_c0_g2_1025_TPlot.pdf
TRINITY_DN3101_c0_g2:1026	si_s846	TRINITY_DN3101_c0_g2	1015	1035	1026	-37.30	-24.90	0.667560321715818	14.5	7-9,1029-1027;11-21,1025-1015	1-6,1035-1030[UP5];10-10,1026-1026[SIL]	(((((((((((.(((......&......))).)))))))))))	UGGGAGUCGACGUGCGCAAGA&AAAGAAGCGAGUCGACUCCUA	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN3101_c0_g2_1026_TPlot.pdf
TRINITY_DN3101_c0_g2:1142	si_s813	TRINITY_DN3101_c0_g2	1129	1151	1142	-27.10	-17.84	0.65830258302583	10.5	2-14,1150-1138;19-21,1131-1129	1-1,1151-1151[UP5];15-18,1137-1132[AILt]	(((......(((((((((((((.&.)))))))))))))--....)))	CGUGCGGUGAAGGAGAGGUAGCA&CGUUACCUUUUCUU--AAUAAUG	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN3101_c0_g2_1142_TPlot.pdf
TRINITY_DN3101_c0_g2:1143	si_s812	TRINITY_DN3101_c0_g2	1132	1152	1143	-26.40	-17.70	0.670454545454545	12	3-15,1150-1138	1-2,1152-1151[UP5];16-21,1137-1132[UP3]	......(((((((((((((..&..)))))))))))))......	GCGGUGAAGGAGAGGUAGCAU&UCGUUACCUUUUCUUAAUAAU	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN3101_c0_g2_1143_TPlot.pdf
TRINITY_DN3101_c0_g2:1941	si_a319	TRINITY_DN3101_c0_g2	1930	1950	1941	-22.40	-15.10	0.674107142857143	8.5	3-15,1948-1936;18-21,1933-1930	1-2,1950-1949[UP5];16-17,1935-1934[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AAUGUCAAAGUCGUGGAUGCA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999999371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3101_c0_g2_1941_TPlot.pdf
TRINITY_DN3101_c0_g2:3683	si_a466	TRINITY_DN3101_c0_g2	3672	3692	3683	-21.50	-14.50	0.674418604651163	15	8-21,3685-3672	1-7,3692-3686[UP5]	((((((((((((((.......&.......))))))))))))))	ACAAUGGUUGCAUAAGGGGGU&UAUAUAAUAUGUAAUUAUUGU	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN3101_c0_g2_3683_TPlot.pdf
TRINITY_DN31027_c0_g1:1252	si_s79	TRINITY_DN31027_c0_g1	1240	1261	1252	-26.20	-20.00	0.763358778625954	9	3-11,1259-1251;12-20,1249-1241	1-2,1261-1260[UP5];x-x,1250-1250[BULt];21-21,1240-1240[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	UGGGAGAAAGUGAAAGGAGAUU&UUUUUUCUUUC-CUUUCUUCUU	2	0.999997668239704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN31027_c0_g1_1252_TPlot.pdf
TRINITY_DN31027_c0_g1:1255	si_s76	TRINITY_DN31027_c0_g1	1243	1264	1255	-23.60	-16.70	0.707627118644068	8.5	2-3,1263-1262;6-14,1259-1251;15-21,1249-1243	1-1,1264-1264[UP5];4-5,1261-1260[SIL];x-x,1250-1250[BULt]	(((((((.(((((((((..((.&.))..)))))))))-)))))))	GAGAAAGUGAAAGGAGAUUAAA&AUUUUUUUUCUUUC-CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN31027_c0_g1_1255_TPlot.pdf
TRINITY_DN31027_c0_g1:1257	si_s74	TRINITY_DN31027_c0_g1	1245	1267	1257	-25.00	-18.10	0.724	7	1-6,1267-1262;8-16,1259-1251;17-21,1249-1245	7-7,1261-1260[AILt];x-x,1250-1250[BULt]	(((((.(((((((((..((((((&))))))-.)))))))))-)))))	GAAAGUGAAAGGAGAUUAAAUAG&CUAUUU-UUUUUCUUUC-CUUUC	2	0.999998764012947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN31027_c0_g1_1257_TPlot.pdf
TRINITY_DN31027_c0_g1:1259	si_s72	TRINITY_DN31027_c0_g1	1247	1269	1259	-24.10	-16.00	0.663900414937759	7	1-8,1269-1262;10-18,1259-1251;19-21,1249-1247	9-9,1261-1260[AILt];x-x,1250-1250[BULt]	(((.(((((((((..((((((((&))))))))-.)))))))))-)))	AAGUGAAAGGAGAUUAAAUAGAG&UUCUAUUU-UUUUUCUUUC-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN31027_c0_g1_1259_TPlot.pdf
TRINITY_DN31027_c0_g1:1326	si_s68	TRINITY_DN31027_c0_g1	1315	1337	1326	-23.10	-15.80	0.683982683982684	8	1-5,1337-1333;6-9,1330-1327;11-20,1325-1316	x-x,1332-1331[BULt];10-10,1326-1326[SIL];21-21,1315-1315[UP3]	.((((((((((.((((..(((((&)))))--)))).)))))))))).	UAAGGAAGAAAUUAGAUGAGUUG&CAACU--UCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN31027_c0_g1_1326_TPlot.pdf
TRINITY_DN31027_c0_g1:2845	si_a794	TRINITY_DN31027_c0_g1	2834	2854	2845	-28.60	-18.88	0.66013986013986	11	1-7,2854-2848;11-18,2844-2837	8-10,2847-2845[SIL];19-21,2836-2834[UP3]	...((((((((...(((((((&)))))))...))))))))...	CAAGGAUUGGAUGUUGGAGAA&UUUUCUAUUUUCCAAUCCGAA	4	0.999986162919743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN31027_c0_g1_2845_TPlot.pdf
TRINITY_DN31042_c0_g1:113	si_a70	TRINITY_DN31042_c0_g1	102	123	113	-23.90	-17.50	0.732217573221757	5.5	1-5,123-119;6-20,117-103	x-x,118-118[BULt];21-21,102-102[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	CAUGGAAAAUAAUUUGCGAAGA&UCUUU-CAAAUUGUUUUUCAUU	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN31042_c0_g1_113_TPlot.pdf
TRINITY_DN31046_c0_g1:1495	si_s191	TRINITY_DN31046_c0_g1	1484	1504	1495	-26.60	-17.60	0.661654135338346	5.5	3-17,1502-1488;19-21,1486-1484	1-2,1504-1503[UP5];18-18,1487-1487[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	UACUUUCUAAAAUAAUUGUAG&UAACGAUUAUUUUGGAAUGUA	2	0.984539391222183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN31046_c0_g1_1495_TPlot.pdf
TRINITY_DN3105_c0_g1:2045	si_a292	TRINITY_DN3105_c0_g1	2032	2054	2045	-26.70	-17.60	0.659176029962547	7	1-11,2054-2044;12-14,2041-2039;16-20,2037-2033	x-x,2043-2042[BULt];15-15,2038-2038[SIL];21-21,2032-2032[UP3]	.(((((.(((..(((((((((((&)))))))))))--))).))))).	AGAAUCAUUUCGUUAGAUCCAAG&CUUGGAUUUAA--AAAAGAUUCG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a292_TRINITY_DN3105_c0_g1_2045_TPlot.pdf
TRINITY_DN3105_c0_g1:2047	si_a290	TRINITY_DN3105_c0_g1	2034	2056	2047	-27.20	-18.30	0.672794117647059	5	1-13,2056-2044;14-16,2041-2039;18-21,2037-2034	x-x,2043-2042[BULt];17-17,2038-2038[SIL]	((((.(((..(((((((((((((&)))))))))))))--))).))))	AAUCAUUUCGUUAGAUCCAAGUG&CGCUUGGAUUUAA--AAAAGAUU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a290_TRINITY_DN3105_c0_g1_2047_TPlot.pdf
TRINITY_DN3105_c0_g1:2048	si_a289	TRINITY_DN3105_c0_g1	2035	2057	2048	-28.20	-18.80	0.666666666666667	5	1-14,2057-2044;15-17,2041-2039;19-21,2037-2035	x-x,2043-2042[BULt];18-18,2038-2038[SIL]	(((.(((..((((((((((((((&))))))))))))))--))).)))	AUCAUUUCGUUAGAUCCAAGUGA&UCGCUUGGAUUUAA--AAAAGAU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN3105_c0_g1_2048_TPlot.pdf
TRINITY_DN3105_c0_g1:24	si_a204	TRINITY_DN3105_c0_g1	13	33	24	-26.30	-17.20	0.653992395437262	8	3-6,31-28;8-21,26-13	1-2,33-32[UP5];7-7,27-27[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UGGUUGGUUGAUUUUUUGGGU&CACUAAUAAAUCGACUAAUUA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN3105_c0_g1_24_TPlot.pdf
TRINITY_DN3105_c0_g1:3158	si_s192	TRINITY_DN3105_c0_g1	3147	3168	3158	-28.00	-18.30	0.653571428571429	8	1-7,3168-3162;10-19,3158-3149	8-9,3161-3159[AILt];20-21,3148-3147[UP3]	..((((((((((...(((((((&)))))))-..))))))))))..	GCACAUUCCAAACACAAUCGUU&AACGAUU-AUUUUGGAAUGUAC	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN3105_c0_g1_3158_TPlot.pdf
TRINITY_DN3105_c0_g1:3159	si_s191	TRINITY_DN3105_c0_g1	3148	3169	3159	-26.60	-19.60	0.736842105263158	7	1-8,3169-3162;11-20,3158-3149	9-10,3161-3159[AILt];21-21,3148-3148[UP3]	.((((((((((...((((((((&))))))))-..)))))))))).	CACAUUCCAAACACAAUCGUUA&UAACGAUU-AUUUUGGAAUGUA	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN3105_c0_g1_3159_TPlot.pdf
TRINITY_DN3105_c0_g1:3160	si_s190	TRINITY_DN3105_c0_g1	3149	3170	3160	-28.00	-19.40	0.692857142857143	7	2-9,3169-3162;12-21,3158-3149	1-1,3170-3170[UP5];10-11,3161-3159[AILt]	((((((((((...((((((((.&.))))))))-..))))))))))	ACAUUCCAAACACAAUCGUUAA&GUAACGAUU-AUUUUGGAAUGU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN3105_c0_g1_3160_TPlot.pdf
TRINITY_DN3105_c0_g1:3321	si_a539	TRINITY_DN3105_c0_g1	3308	3330	3321	-32.70	-21.30	0.651376146788991	9	1-8,3330-3323;11-13,3320-3318;14-18,3315-3311	9-10,3322-3321[SIL];x-x,3317-3316[BULt];19-21,3310-3308[UP3]	...(((((..(((..((((((((&))))))))..)))--)))))...	UUCUAGAUUAUGAUACGAUCGCU&AGCGAUCGGUUCA--AUCUAUUU	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN3105_c0_g1_3321_TPlot.pdf
TRINITY_DN3105_c0_g1:3738	si_a403	TRINITY_DN3105_c0_g1	3727	3747	3738	-22.00	-17.20	0.781818181818182	7.5	2-8,3746-3740;10-19,3738-3729	1-1,3747-3747[UP5];9-9,3739-3739[SIL];20-21,3728-3727[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	AUGUGUGAACAGUACAAUUCG&AGAAUUGUUUUGUUUAUAUUU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3105_c0_g1_3738_TPlot.pdf
TRINITY_DN3105_c0_g1:3742	si_a399	TRINITY_DN3105_c0_g1	3731	3751	3742	-22.60	-14.80	0.654867256637168	11.5	6-12,3746-3740;14-21,3738-3731	1-5,3751-3747[UP5];13-13,3739-3739[SIL]	((((((((.(((((((.....&.....))))))).))))))))	GUGAACAGUACAAUUCGUUGG&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999982535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3105_c0_g1_3742_TPlot.pdf
TRINITY_DN3105_c1_g1:229	si_a288	TRINITY_DN3105_c1_g1	218	238	229	-28.20	-18.90	0.670212765957447	8.5	1-14,238-225	15-21,224-218[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCAACUGAAUCCAAGUGAU&AUCGCUUGGAUUUAAAAAAGA	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN3105_c1_g1_229_TPlot.pdf
TRINITY_DN31087_c0_g1:144	si_a701	TRINITY_DN31087_c0_g1	133	156	144	-31.20	-21.10	0.676282051282051	12	2-7,155-150;8-18,146-136	1-1,156-156[UP5];x-x,149-147[BULt];19-21,135-133[UP3]	...(((((((((((...((((((.&.))))))---)))))))))))...	UUCUUGGAAUGUGCAAGUAGUUGG&ACAACUG---GUACAUUCCAAAAU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN31087_c0_g1_144_TPlot.pdf
TRINITY_DN3108_c0_g1:8773	si_a721	TRINITY_DN3108_c0_g1	8762	8783	8773	-35.10	-23.00	0.655270655270655	12	3-5,8781-8779;6-16,8777-8767	1-2,8783-8782[UP5];x-x,8778-8778[BULt];17-21,8766-8762[UP3]	.....(((((((((((.(((..&..)))-))))))))))).....	AACAGGCCCGAGUGGCAGAUAC&UAAUC-GUUACUCGGGCAUCUU	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN3108_c0_g1_8773_TPlot.pdf
TRINITY_DN3108_c0_g1:8779	si_a716	TRINITY_DN3108_c0_g1	8767	8788	8779	-33.40	-22.60	0.676646706586826	16.5	8-10,8781-8779;11-21,8777-8767	1-7,8788-8782[UP5];x-x,8778-8778[BULt]	(((((((((((.(((.......&.......)))-)))))))))))	GCCCGAGUGGCAGAUACCGAGA&CAAAAUAAUC-GUUACUCGGGC	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN3108_c0_g1_8779_TPlot.pdf
TRINITY_DN31095_c0_g1:53	si_a415	TRINITY_DN31095_c0_g1	44	62	53	-18.10	-12.70	0.701657458563536	6	1-10,62-53;13-21,52-44	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	CUAUAUUUA--UAAAUAUGGA&UUUAUAUUUAAAUAAAUAUAG	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN31095_c0_g1_53_TPlot.pdf
TRINITY_DN31095_c0_g1:55	si_a413	TRINITY_DN31095_c0_g1	46	64	55	-18.40	-12.70	0.690217391304348	4	1-12,64-53;15-21,52-46	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AUAUUUA--UAAAUAUGGACA&UGUUUAUAUUUAAAUAAAUAU	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN31095_c0_g1_55_TPlot.pdf
TRINITY_DN31095_c0_g1:56	si_a412	TRINITY_DN31095_c0_g1	47	65	56	-18.30	-11.90	0.650273224043716	5	2-13,64-53;16-21,52-47	1-1,65-65[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	UAUUUA--UAAAUAUGGACAG&UUGUUUAUAUUUAAAUAAAUA	4	0.99999999410809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN31095_c0_g1_56_TPlot.pdf
TRINITY_DN31095_c0_g1:57	si_a411	TRINITY_DN31095_c0_g1	48	66	57	-17.90	-12.20	0.681564245810056	5	1-14,66-53;17-21,52-48	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	AUUUA--UAAAUAUGGACAGA&UUUGUUUAUAUUUAAAUAAAU	3	0.999999893314632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN31095_c0_g1_57_TPlot.pdf
TRINITY_DN3109_c0_g1:1409	si_s47	TRINITY_DN3109_c0_g1	1397	1418	1409	-26.30	-18.30	0.695817490494297	9	3-11,1416-1408;12-19,1406-1399	1-2,1418-1417[UP5];x-x,1407-1407[BULt];20-21,1398-1397[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	AGAACUUGAAGGUCCAGUUACG&AAUAAUUGGAU-UUCAAGUUAG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN3109_c0_g1_1409_TPlot.pdf
TRINITY_DN310_c0_g1:1014	si_a444	TRINITY_DN310_c0_g1	1003	1023	1014	-29.30	-19.90	0.679180887372014	7.5	1-3,1023-1021;6-12,1018-1012;15-21,1009-1003	4-5,1020-1019[SIL];13-14,1011-1010[SIL]	(((((((..(((((((..(((&)))..)))))))..)))))))	GACAGCGUCUAUCUCAGCUCC&GGAUAUGAGAUAAUUGUUGUU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN310_c0_g1_1014_TPlot.pdf
TRINITY_DN310_c0_g1:1399	si_a503	TRINITY_DN310_c0_g1	1388	1407	1399	-32.10	-22.00	0.685358255451713	7	1-5,1407-1403;7-18,1402-1391	6-6,x-x[BULq];19-21,1390-1388[UP3]	...((((((((((((-(((((&))))).))))))))))))...	CCCUCCAAGGAAGGC-AAGAA&UUUUUCGUCUUCCUUGGAAUG	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN310_c0_g1_1399_TPlot.pdf
TRINITY_DN310_c0_g1:1587	si_s631	TRINITY_DN310_c0_g1	1576	1596	1587	-36.00	-24.30	0.675	6	1-13,1596-1584;14-18,1582-1578;20-21,1577-1576	x-x,1583-1583[BULt];19-19,x-x[BULq]	((-(((((.(((((((((((((&)))))))))))))-))))).))	GG-AGGCGACCUAUGAGGAGAU&AUCUUUUCGUAGG-CGUUUGCC	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN310_c0_g1_1587_TPlot.pdf
TRINITY_DN310_c0_g1:1592	si_s626	TRINITY_DN310_c0_g1	1580	1601	1592	-36.10	-28.00	0.775623268698061	8	3-18,1599-1584;19-21,1582-1580	1-2,1601-1600[UP5];x-x,1583-1583[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	GCGACCUAUGAGGAGAUCGUCG&AAGCGAUCUUUUCGUAGG-CGU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN310_c0_g1_1592_TPlot.pdf
TRINITY_DN310_c0_g1:1899	si_a450	TRINITY_DN310_c0_g1	1888	1907	1899	-25.20	-17.60	0.698412698412698	10	1-8,1907-1900;10-17,1899-1892	9-9,x-x[BULq];18-21,1891-1888[UP3]	....((((((((-((((((((&)))))))).))))))))....	ACUCGUGACGAC-GUUGUCUC&GAGAUAAUUGUUGUUAUAUAU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN310_c0_g1_1899_TPlot.pdf
TRINITY_DN310_c0_g1:1900	si_a449	TRINITY_DN310_c0_g1	1889	1908	1900	-25.70	-18.60	0.723735408560311	8.5	1-9,1908-1900;11-18,1899-1892	10-10,x-x[BULq];19-21,1891-1889[UP3]	...((((((((-(((((((((&))))))))).))))))))...	CUCGUGACGAC-GUUGUCUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN310_c0_g1_1900_TPlot.pdf
TRINITY_DN310_c0_g1:1901	si_a447	TRINITY_DN310_c0_g1	1891	1910	1901	-25.70	-18.60	0.723735408560311	9.5	3-11,1908-1900;13-20,1899-1892	1-2,1910-1909[UP5];12-12,x-x[BULq];21-21,1891-1891[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	CGUGACGAC-GUUGUCUCAGC&UAUGAGAUAAUUGUUGUUAUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN310_c0_g1_1901_TPlot.pdf
TRINITY_DN310_c0_g1:2026	si_a145	TRINITY_DN310_c0_g1	2016	2035	2026	-28.10	-18.32	0.651957295373665	10.5	4-13,2032-2023;18-21,2019-2016	1-3,2035-2033[UP5];14-17,2022-2020[AILq]	((((...-((((((((((...&...))))))))))....))))	GCCUGGU-ACGACAACGAGUG&UAAUCGUUGUUGUUUUAAGGU	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN310_c0_g1_2026_TPlot.pdf
TRINITY_DN310_c0_g1:2129	si_s899	TRINITY_DN310_c0_g1	2114	2138	2129	-28.30	-18.70	0.660777385159011	13.5	2-12,2137-2127;13-19,2122-2116	1-1,2138-2138[UP5];x-x,2126-2123[BULt];20-21,2115-2114[UP3]	..(((((((....(((((((((((.&.)))))))))))----)))))))..	AUUUGAAGUUGCAUGAGGAGGAAGA&GCUUUCUCUUCA----AUUUCAAUU	2	0.999997118796743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN310_c0_g1_2129_TPlot.pdf
TRINITY_DN310_c0_g1:2138	si_s84	TRINITY_DN310_c0_g1	2127	2148	2138	-32.30	-21.20	0.656346749226006	6	1-5,2148-2144;6-6,2142-2142;8-20,2140-2128	x-x,2143-2143[BULt];7-7,2141-2141[SIL];21-21,2127-2127[UP3]	.(((((((((((((.(.(((((&)))))-).))))))))))))).	UGAGGAGGAAGAAACGAAAAGA&UCUUU-CCUUUCUUCUUCUUCG	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN310_c0_g1_2138_TPlot.pdf
TRINITY_DN310_c0_g1:2139	si_s83	TRINITY_DN310_c0_g1	2128	2149	2139	-30.90	-21.20	0.686084142394822	5	1-6,2149-2144;7-7,2142-2142;9-21,2140-2128	x-x,2143-2143[BULt];8-8,2141-2141[SIL]	(((((((((((((.(.((((((&))))))-).)))))))))))))	GAGGAGGAAGAAACGAAAAGAA&UUCUUU-CCUUUCUUCUUCUUC	2	0.999999999996163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN310_c0_g1_2139_TPlot.pdf
TRINITY_DN310_c0_g1:2231	si_s192	TRINITY_DN310_c0_g1	2220	2241	2231	-28.00	-19.40	0.692857142857143	11.5	3-4,2239-2238;5-8,2236-2233;10-21,2231-2220	1-2,2241-2240[UP5];x-x,2237-2237[BULt];9-9,2232-2232[SIL]	((((((((((((.((((.((..&..))-)))).))))))))))))	GUGCAUUCCAGGUUGGUACGAC&AACG-AUUAUUUUGGAAUGUAC	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN310_c0_g1_2231_TPlot.pdf
TRINITY_DN310_c0_g1:4655	si_a676	TRINITY_DN310_c0_g1	4643	4664	4655	-34.00	-22.40	0.658823529411765	11.5	5-11,4660-4654;12-20,4652-4644	1-4,4664-4661[UP5];x-x,4653-4653[BULt];21-21,4643-4643[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	AAAGCCGCGUGGAAUGAGACUG&AUUCCUUAUUC-ACGCGGUUUC	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN310_c0_g1_4655_TPlot.pdf
TRINITY_DN310_c0_g1:5305	si_a789	TRINITY_DN310_c0_g1	5292	5314	5305	-24.80	-16.80	0.67741935483871	8.5	1-10,5314-5305;11-13,5302-5300;15-21,5298-5292	x-x,5304-5303[BULt];14-14,5299-5299[SIL]	(((((((.(((..((((((((((&))))))))))--))).)))))))	GUUGGAGCGUGCUGAAAAAUGGA&UCUAUUUUUC--UAUUUUCCAAU	2	0.999995601000782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN310_c0_g1_5305_TPlot.pdf
TRINITY_DN310_c0_g1:5311	si_a783	TRINITY_DN310_c0_g1	5300	5321	5311	-24.70	-16.10	0.651821862348178	9	2-6,5320-5316;7-16,5314-5305	1-1,5321-5321[UP5];x-x,5315-5315[BULt];17-21,5304-5300[UP3]	.....((((((((((.(((((.&.)))))-)))))))))).....	GUGCUGAAAAAUGGAGAGAGUA&AACUCU-UCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN310_c0_g1_5311_TPlot.pdf
TRINITY_DN310_c0_g1:5419	si_a718	TRINITY_DN310_c0_g1	5408	5428	5419	-32.60	-21.60	0.662576687116564	16	7-11,5422-5418;13-19,5416-5410	1-6,5428-5423[UP5];12-12,5417-5417[SIL];20-21,5409-5408[UP3]	..(((((((.(((((......&......))))).)))))))..	UGGCCCGAGCGACGAGACAGA&AAAUAAUCGUUACUCGGGCAU	2	0.911698574034005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN310_c0_g1_5419_TPlot.pdf
TRINITY_DN310_c0_g1:5420	si_a717	TRINITY_DN310_c0_g1	5409	5429	5420	-32.40	-21.60	0.666666666666667	16	8-12,5422-5418;14-20,5416-5410	1-7,5429-5423[UP5];13-13,5417-5417[SIL];21-21,5409-5409[UP3]	.(((((((.(((((.......&.......))))).))))))).	GGCCCGAGCGACGAGACAGAC&AAAAUAAUCGUUACUCGGGCA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN310_c0_g1_5420_TPlot.pdf
TRINITY_DN3110_c0_g1:2455	si_a140	TRINITY_DN3110_c0_g1	2443	2464	2455	-25.20	-16.50	0.654761904761905	10.5	5-15,2460-2450;16-21,2448-2443	1-4,2464-2461[UP5];x-x,2449-2449[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GAAGCAGACGGCGAUUAAAAAG&GUAAUUAAUCGUUGU-UGUUUU	4	0.999999997943882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN3110_c0_g1_2455_TPlot.pdf
TRINITY_DN3110_c0_g1:278	si_s770	TRINITY_DN3110_c0_g1	266	287	278	-26.60	-18.60	0.699248120300752	8.5	1-3,287-285;5-15,283-273;16-20,271-267	4-4,284-284[SIL];x-x,272-272[BULt];21-21,266-266[UP3]	.(((((.(((((((((((.(((&))).)))))))))))-))))).	CAUGGCGGGUGGUGAUUGUUCG&CGAUUAAUUACUAUU-GCUAUA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN3110_c0_g1_278_TPlot.pdf
TRINITY_DN3110_c0_g1:353	si_a325	TRINITY_DN3110_c0_g1	344	362	353	-25.90	-17.00	0.656370656370656	8	1-12,362-351;14-18,350-346;20-21,345-344	13-13,x-x[BULq];19-19,x-x[BULq]	((-(((((-((((((((((((&)))))))))))).))))).))	GC-GGGAA-GAAGAGGUCGUG&CAUGAUUUUUUUAUUCCUUGU	4	0.999999965938056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN3110_c0_g1_353_TPlot.pdf
TRINITY_DN3110_c0_g1:354	si_a324	TRINITY_DN3110_c0_g1	344	363	354	-27.50	-20.10	0.730909090909091	8	1-13,363-351;15-19,350-346	14-14,x-x[BULq];20-21,345-344[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	GCGGGAA-GAAGAGGUCGUGG&CCAUGAUUUUUUUAUUCCUUG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN3110_c0_g1_354_TPlot.pdf
TRINITY_DN3110_c0_g1:358	si_a320	TRINITY_DN3110_c0_g1	347	367	358	-24.40	-16.50	0.676229508196721	12.5	5-17,363-351;19-21,349-347	1-4,367-364[UP5];18-18,350-350[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GGAAGAAGAGGUCGUGGGACG&UUAUCCAUGAUUUUUUUAUUC	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN3110_c0_g1_358_TPlot.pdf
TRINITY_DN3110_c0_g1:359	si_a319	TRINITY_DN3110_c0_g1	348	368	359	-22.40	-15.10	0.674107142857143	15.5	6-18,363-351	1-5,368-364[UP5];19-21,350-348[UP3]	...(((((((((((((.....&.....)))))))))))))...	GAAGAAGAGGUCGUGGGACGG&UUUAUCCAUGAUUUUUUUAUU	2	0.999999894860536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3110_c0_g1_359_TPlot.pdf
TRINITY_DN3110_c0_g1:360	si_a318	TRINITY_DN3110_c0_g1	349	369	360	-22.50	-15.10	0.671111111111111	16	7-19,363-351	1-6,369-364[UP5];20-21,350-349[UP3]	..(((((((((((((......&......)))))))))))))..	AAGAAGAGGUCGUGGGACGGG&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999994271	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3110_c0_g1_360_TPlot.pdf
TRINITY_DN3110_c0_g1:383	si_s92	TRINITY_DN3110_c0_g1	371	393	383	-34.90	-22.70	0.650429799426934	10.5	2-8,392-386;9-16,384-377;17-19,375-373	1-1,393-393[UP5];x-x,385-385[BULt];x-x,376-376[BULt];20-21,372-371[UP3]	..(((.((((((((.(((((((.&.)))))))-))))))))-)))..	AGCCGCGAGCGAGGUGAGAGGGU&UUCUUCUU-CUUCGCUU-CGGAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3110_c0_g1_383_TPlot.pdf
TRINITY_DN3110_c0_g1:384	si_s91	TRINITY_DN3110_c0_g1	372	394	384	-34.70	-22.70	0.654178674351585	11.5	3-9,392-386;10-17,384-377;18-20,375-373	1-2,394-393[UP5];x-x,385-385[BULt];x-x,376-376[BULt];21-21,372-372[UP3]	.(((.((((((((.(((((((..&..)))))))-))))))))-))).	GCCGCGAGCGAGGUGAGAGGGUU&UUUCUUCUU-CUUCGCUU-CGGA	2	0.999999999982483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3110_c0_g1_384_TPlot.pdf
TRINITY_DN3110_c0_g1:448	si_s896	TRINITY_DN3110_c0_g1	437	457	448	-31.60	-22.70	0.718354430379747	8	3-10,455-448;12-20,446-438	1-2,457-456[UP5];11-11,447-447[SIL];21-21,437-437[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	GGGAGUUGAGCAGAAAGCCGC&UAGGCUUUCUCUUCAAUUUCA	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3110_c0_g1_448_TPlot.pdf
TRINITY_DN3110_c0_g1:449	si_s895	TRINITY_DN3110_c0_g1	438	458	449	-31.10	-22.30	0.717041800643087	8.5	4-11,455-448;13-21,446-438	1-3,458-456[UP5];12-12,447-447[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GGAGUUGAGCAGAAAGCCGCA&AUAGGCUUUCUCUUCAAUUUC	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3110_c0_g1_449_TPlot.pdf
TRINITY_DN31117_c0_g1:130	si_s432	TRINITY_DN31117_c0_g1	119	139	130	-21.30	-14.60	0.685446009389671	8.5	3-6,137-134;8-19,132-121	1-2,139-138[UP5];7-7,133-133[SIL];20-21,120-119[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	AUUAGUAUGUAGUUUUUGUAA&UAACAAUAAUUACAUAUUAUA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN31117_c0_g1_130_TPlot.pdf
TRINITY_DN31117_c0_g1:132	si_s430	TRINITY_DN31117_c0_g1	121	141	132	-21.30	-14.50	0.68075117370892	10.5	5-8,137-134;10-21,132-121	1-4,141-138[UP5];9-9,133-133[SIL]	((((((((((((.((((....&....)))).))))))))))))	UAGUAUGUAGUUUUUGUAACA&UAUAACAAUAAUUACAUAUUA	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN31117_c0_g1_132_TPlot.pdf
TRINITY_DN3112_c0_g1:4720	si_s76	TRINITY_DN3112_c0_g1	4709	4729	4720	-23.60	-19.30	0.817796610169491	10.5	3-4,4727-4726;6-21,4724-4709	1-2,4729-4728[UP5];5-5,4725-4725[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	GAGAAGGGGAGGAGAGUGAGA&AUUUUUUUUCUUUCCUUUCUU	4	0.999980747715898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3112_c0_g1_4720_TPlot.pdf
TRINITY_DN3112_c0_g1:5048	si_s315	TRINITY_DN3112_c0_g1	5036	5056	5048	-31.60	-21.40	0.677215189873418	6	1-6,5056-5051;8-14,5050-5044;15-19,5042-5038	7-7,x-x[BULq];x-x,5043-5043[BULt];20-21,5037-5036[UP3]	..(((((.(((((((-((((((&)))))).)))))))-)))))..	UGGUAACGAAGAAGG-CGGAAU&AUUCUGUCCUUCUU-GUUACAA	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN3112_c0_g1_5048_TPlot.pdf
TRINITY_DN3112_c0_g1:5230	si_s257	TRINITY_DN3112_c0_g1	5219	5239	5230	-28.30	-18.90	0.667844522968198	9	2-9,5238-5231;12-17,5228-5223	1-1,5239-5239[UP5];10-11,5230-5229[SIL];18-21,5222-5219[UP3]	....((((((..((((((((.&.))))))))..))))))....	CCGCUUGAGUUUUAUAUCGGC&CCCGAUAUAUUACUCAAAAAA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s257_TRINITY_DN3112_c0_g1_5230_TPlot.pdf
TRINITY_DN3112_c0_g1:6271	si_s101	TRINITY_DN3112_c0_g1	6261	6280	6271	-32.50	-22.40	0.689230769230769	9	2-12,6279-6269;14-16,6268-6266	1-1,6280-6280[UP5];13-13,x-x[BULq];17-21,6265-6261[UP3]	.....(((-(((((((((((.&.))))))))))).))).....	UCCCCUCC-GUCCGAAGCGGG&UUCGCUUCGGAUUGGAAAAUA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN3112_c0_g1_6271_TPlot.pdf
TRINITY_DN3112_c0_g1:6274	si_s98	TRINITY_DN3112_c0_g1	6264	6282	6274	-34.70	-23.30	0.671469740634006	7	1-4,6282-6279;6-15,6278-6269;17-19,6268-6266	5-5,x-x[BULq];16-16,x-x[BULq];20-21,6265-6264[UP3]	..(((-((((((((((-((((&)))).)))))))))).)))..	CCUCC-GUCCGAAGCG-GGAG&UUCUUCGCUUCGGAUUGGAAA	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN3112_c0_g1_6274_TPlot.pdf
TRINITY_DN3112_c0_g1:6275	si_s97	TRINITY_DN3112_c0_g1	6265	6283	6275	-36.30	-25.80	0.710743801652893	6.5	1-5,6283-6279;7-16,6278-6269;18-20,6268-6266	6-6,x-x[BULq];17-17,x-x[BULq];21-21,6265-6265[UP3]	.(((-((((((((((-(((((&))))).)))))))))).))).	CUCC-GUCCGAAGCG-GGAGG&CUUCUUCGCUUCGGAUUGGAA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN3112_c0_g1_6275_TPlot.pdf
TRINITY_DN3112_c0_g1:6335	si_a335	TRINITY_DN3112_c0_g1	6324	6344	6335	-31.10	-22.00	0.707395498392283	14	5-16,6340-6329	1-4,6344-6341[UP5];17-21,6328-6324[UP3]	.....((((((((((((....&....)))))))))))).....	GAUCGUCGGGACAGGGGCAGG&UUAUUCCUUGUCCCGAAAAUA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN3112_c0_g1_6335_TPlot.pdf
TRINITY_DN3112_c0_g1:6398	si_a504	TRINITY_DN3112_c0_g1	6387	6408	6398	-32.90	-22.00	0.668693009118541	9.5	2-6,6407-6403;7-16,6401-6392	1-1,6408-6408[UP5];x-x,6402-6402[BULt];17-21,6391-6387[UP3]	.....((((((((((.(((((.&.)))))-)))))))))).....	GUCUGCCGAGGAAGAUCGAGAG&UUUUCG-UCUUCCUUGGAAUGU	4	0.999989635785725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN3112_c0_g1_6398_TPlot.pdf
TRINITY_DN3112_c0_g1:6403	si_a500	TRINITY_DN3112_c0_g1	6391	6412	6403	-34.40	-27.10	0.787790697674419	8.5	3-10,6410-6403;11-20,6401-6392	1-2,6412-6411[UP5];x-x,6402-6402[BULt];21-21,6391-6391[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	GCCGAGGAAGAUCGAGAGACAA&UCGUUUUUCG-UCUUCCUUGGA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3112_c0_g1_6403_TPlot.pdf
TRINITY_DN31134_c1_g1:87	si_s495	TRINITY_DN31134_c1_g1	76	96	87	-19.80	-13.20	0.666666666666667	7	2-9,95-88;12-20,85-77	1-1,96-96[UP5];10-11,87-86[SIL];21-21,76-76[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CAUUGUUUUGAAUGUAUUUAU&UUAAAUAUAAACAAAACAAUU	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN31134_c1_g1_87_TPlot.pdf
TRINITY_DN3114_c0_g1:280	si_a65	TRINITY_DN3114_c0_g1	269	289	280	-27.70	-18.20	0.657039711191336	8.5	3-12,287-278;14-20,276-270	1-2,289-288[UP5];13-13,277-277[SIL];21-21,269-269[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CAGGCGAUGUGAGAGAAGUAG&UCGCUUCUUUCAAAUUGUUUU	2	0.999998779300891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN3114_c0_g1_280_TPlot.pdf
TRINITY_DN3115_c0_g1:112	si_a502	TRINITY_DN3115_c0_g1	99	121	112	-32.10	-21.80	0.679127725856698	8	1-9,121-113;11-17,111-105;18-21,102-99	10-10,112-112[SIL];x-x,104-103[BULt]	((((..(((((((.(((((((((&))))))))).)))))))--))))	AUUCAUCAAGGAGCGCGAGAAGC&GUUUUUCGUCUUCCUUG--GAAU	3	0.99999999573215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3115_c0_g1_112_TPlot.pdf
TRINITY_DN3115_c0_g1:113	si_a501	TRINITY_DN3115_c0_g1	102	122	113	-33.50	-23.60	0.704477611940299	9	1-10,122-113;12-18,111-105	11-11,112-112[SIL];19-21,104-102[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	CAUCAAGGAGCGCGAGAAGCG&CGUUUUUCGUCUUCCUUGGAA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3115_c0_g1_113_TPlot.pdf
TRINITY_DN3115_c0_g1:114	si_a500	TRINITY_DN3115_c0_g1	103	123	114	-34.40	-25.20	0.732558139534884	7.5	1-11,123-113;13-19,111-105	12-12,112-112[SIL];20-21,104-103[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AUCAAGGAGCGCGAGAAGCGA&UCGUUUUUCGUCUUCCUUGGA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3115_c0_g1_114_TPlot.pdf
TRINITY_DN3115_c0_g1:115	si_a499	TRINITY_DN3115_c0_g1	104	124	115	-35.20	-25.20	0.715909090909091	6.5	2-12,123-113;14-20,111-105	1-1,124-124[UP5];13-13,112-112[SIL];21-21,104-104[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UCAAGGAGCGCGAGAAGCGAA&GUCGUUUUUCGUCUUCCUUGG	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3115_c0_g1_115_TPlot.pdf
TRINITY_DN3115_c0_g1:116	si_a498	TRINITY_DN3115_c0_g1	105	125	116	-33.50	-24.20	0.722388059701493	7	3-13,123-113;15-21,111-105	1-2,125-124[UP5];14-14,112-112[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	CAAGGAGCGCGAGAAGCGAAG&UGUCGUUUUUCGUCUUCCUUG	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3115_c0_g1_116_TPlot.pdf
TRINITY_DN3115_c0_g1:117	si_a497	TRINITY_DN3115_c0_g1	106	126	117	-32.00	-21.70	0.678125	9	4-14,123-113;16-21,111-106	1-3,126-124[UP5];15-15,112-112[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AAGGAGCGCGAGAAGCGAAGC&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999997973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3115_c0_g1_117_TPlot.pdf
TRINITY_DN3115_c0_g1:1719	si_s525	TRINITY_DN3115_c0_g1	1705	1728	1719	-24.00	-17.00	0.708333333333333	10.5	4-14,1725-1715;15-21,1711-1705	1-3,1728-1726[UP5];x-x,1714-1712[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	GUCAAGAAGCGUGGUUUCGAAGUU&UAAUUCGAAAUCAU---UUUUGAU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN3115_c0_g1_1719_TPlot.pdf
TRINITY_DN3115_c0_g1:1723	si_s214	TRINITY_DN3115_c0_g1	1712	1740	1723	-37.10	-24.30	0.654986522911051	20	1-8,1740-1733;9-20,1724-1713	x-x,1732-1725[BULt];21-21,1712-1712[UP3]	.((((((((((((........((((((((&))))))))--------)))))))))))).	AGCGUGGUUUCGAAGUUGUCUACAUGACU&AGUUGUGU--------UCGAAACCGCGUG	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s214_TRINITY_DN3115_c0_g1_1723_TPlot.pdf
TRINITY_DN3115_c0_g1:1733	si_s212	TRINITY_DN3115_c0_g1	1714	1742	1733	-38.70	-26.20	0.677002583979328	19.5	2-10,1741-1733;11-21,1724-1714	1-1,1742-1742[UP5];x-x,1732-1725[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	CGUGGUUUCGAAGUUGUCUACAUGACUGA&CCAGUUGUGU--------UCGAAACCGCG	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN3115_c0_g1_1733_TPlot.pdf
TRINITY_DN3115_c0_g1:2186	si_s78	TRINITY_DN3115_c0_g1	2175	2195	2186	-26.20	-18.20	0.694656488549618	5.5	1-10,2195-2186;12-15,2185-2182;16-20,2180-2176	11-11,x-x[BULq];x-x,2181-2181[BULt];21-21,2175-2175[UP3]	.(((((.((((-((((((((((&)))))))))).))))-))))).	UGAAGAUGAGG-AAGAAAAGAA&UUUUUUUCUUUCCUU-UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3115_c0_g1_2186_TPlot.pdf
TRINITY_DN3115_c0_g1:2618	si_s34	TRINITY_DN3115_c0_g1	2607	2627	2618	-23.30	-16.00	0.686695278969957	7.5	3-17,2625-2611	1-2,2627-2626[UP5];18-21,2610-2607[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGCUGUUAAAGAUUUAGUCA&CAACUAAAUCUUUAAUAAUUG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN3115_c0_g1_2618_TPlot.pdf
TRINITY_DN3115_c0_g1:2619	si_s33	TRINITY_DN3115_c0_g1	2608	2628	2619	-24.10	-16.00	0.663900414937759	8.5	4-18,2625-2611	1-3,2628-2626[UP5];19-21,2610-2608[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGCUGUUAAAGAUUUAGUCAU&GCAACUAAAUCUUUAAUAAUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN3115_c0_g1_2619_TPlot.pdf
TRINITY_DN3115_c0_g1:415	si_s604	TRINITY_DN3115_c0_g1	403	424	415	-26.80	-17.80	0.664179104477612	9	4-17,421-408;18-21,406-403	1-3,424-422[UP5];x-x,407-407[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	GAUUCUGGAAAGGAUUUGCACA&CAAGCGAAUCUUUUUUA-AAUC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s604_TRINITY_DN3115_c0_g1_415_TPlot.pdf
TRINITY_DN3115_c0_g1:553	si_a312	TRINITY_DN3115_c0_g1	542	563	553	-31.20	-21.20	0.67948717948718	13	1-7,563-557;12-18,551-545	8-11,556-552[AILt];19-21,544-542[UP3]	...(((((((.....(((((((&)))))))-....)))))))...	CAUUCAUGGAGGCCCUCCAAGC&GCUUGGA-UUUAUCCAUGAUUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN3115_c0_g1_553_TPlot.pdf
TRINITY_DN3115_c0_g1:554	si_a311	TRINITY_DN3115_c0_g1	543	564	554	-32.70	-21.60	0.660550458715596	13	2-8,563-557;13-19,551-545	1-1,564-564[UP5];9-12,556-552[AILt];20-21,544-543[UP3]	..(((((((.....(((((((.&.)))))))-....)))))))..	AUUCAUGGAGGCCCUCCAAGCU&CGCUUGGA-UUUAUCCAUGAUU	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN3115_c0_g1_554_TPlot.pdf
TRINITY_DN3115_c0_g1:659	si_a142	TRINITY_DN3115_c0_g1	648	668	659	-23.50	-16.20	0.68936170212766	13.5	6-19,663-650	1-5,668-664[UP5];20-21,649-648[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAGAACAACGAUGAUGAGCA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3115_c0_g1_659_TPlot.pdf
TRINITY_DN3115_c0_g1:660	si_a141	TRINITY_DN3115_c0_g1	649	669	660	-23.80	-16.20	0.680672268907563	14.5	7-20,663-650	1-6,669-664[UP5];21-21,649-649[UP3]	.((((((((((((((......&......)))))))))))))).	AAGAACAACGAUGAUGAGCAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999972517613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3115_c0_g1_660_TPlot.pdf
TRINITY_DN3115_c0_g1:872	si_s69	TRINITY_DN3115_c0_g1	861	881	872	-23.40	-15.40	0.658119658119658	9.5	4-7,878-875;9-21,873-861	1-3,881-879[UP5];8-8,874-874[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAAAGAGAAAAGGAAUU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3115_c0_g1_872_TPlot.pdf
TRINITY_DN3115_c0_g1:901	si_s91	TRINITY_DN3115_c0_g1	889	912	901	-34.70	-23.00	0.662824207492795	7.5	1-8,912-905;9-13,902-898;14-19,896-891	x-x,904-903[BULt];x-x,897-897[BULt];20-21,890-889[UP3]	..((((((.(((((..((((((((&))))))))--)))))-))))))..	GACGAGGCUGAAGAAGAGAAGAAA&UUUCUUCU--UCUUC-GCUUCGGA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3115_c0_g1_901_TPlot.pdf
TRINITY_DN3115_c0_g1:902	si_s90	TRINITY_DN3115_c0_g1	890	913	902	-35.30	-25.90	0.73371104815864	6.5	1-9,913-905;10-14,902-898;15-20,896-891	x-x,904-903[BULt];x-x,897-897[BULt];21-21,890-890[UP3]	.((((((.(((((..(((((((((&)))))))))--)))))-)))))).	ACGAGGCUGAAGAAGAGAAGAAAG&CUUUCUUCU--UCUUC-GCUUCGG	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3115_c0_g1_902_TPlot.pdf
TRINITY_DN3115_c0_g1:905	si_s89	TRINITY_DN3115_c0_g1	891	914	905	-35.30	-25.80	0.730878186968839	6.5	2-10,913-905;11-15,902-898;16-21,896-891	1-1,914-914[UP5];x-x,904-903[BULt];x-x,897-897[BULt]	((((((.(((((..(((((((((.&.)))))))))--)))))-))))))	CGAGGCUGAAGAAGAGAAGAAAGA&CCUUUCUUCU--UCUUC-GCUUCG	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3115_c0_g1_905_TPlot.pdf
TRINITY_DN3115_c0_g1:906	si_s88	TRINITY_DN3115_c0_g1	892	915	906	-34.80	-23.40	0.672413793103448	8.5	3-11,913-905;12-16,902-898;17-21,896-892	1-2,915-914[UP5];x-x,904-903[BULt];x-x,897-897[BULt]	(((((.(((((..(((((((((..&..)))))))))--)))))-)))))	GAGGCUGAAGAAGAGAAGAAAGAA&UCCUUUCUUCU--UCUUC-GCUUC	3	0.999999999999953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3115_c0_g1_906_TPlot.pdf
TRINITY_DN3115_c0_g1:907	si_s82	TRINITY_DN3115_c0_g1	896	916	907	-28.90	-21.30	0.737024221453287	5.5	1-8,916-909;10-19,907-898	9-9,908-908[SIL];20-21,897-896[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	CUGAAGAAGAGAAGAAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999999978345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3115_c0_g1_907_TPlot.pdf
TRINITY_DN3115_c0_g1:908	si_s81	TRINITY_DN3115_c0_g1	897	917	908	-28.90	-21.80	0.754325259515571	5.5	1-9,917-909;11-20,907-898	10-10,908-908[SIL];21-21,897-897[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UGAAGAAGAGAAGAAAGAAGG&UUUUCUUUCCUUUCUUCUUCU	3	0.999999969590209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3115_c0_g1_908_TPlot.pdf
TRINITY_DN3115_c0_g1:909	si_s80	TRINITY_DN3115_c0_g1	898	918	909	-28.20	-21.40	0.75886524822695	5.5	2-10,917-909;12-21,907-898	1-1,918-918[UP5];11-11,908-908[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	GAAGAAGAGAAGAAAGAAGGU&UUUUUCUUUCCUUUCUUCUUC	3	0.999999971382081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3115_c0_g1_909_TPlot.pdf
TRINITY_DN3115_c0_g1:910	si_s79	TRINITY_DN3115_c0_g1	899	919	910	-26.20	-18.40	0.702290076335878	7.5	3-11,917-909;13-21,907-899	1-2,919-918[UP5];12-12,908-908[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAGAAGAGAAGAAAGAAGGUG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3115_c0_g1_910_TPlot.pdf
TRINITY_DN3115_c0_g1:920	si_s899	TRINITY_DN3115_c0_g1	909	929	920	-28.30	-18.50	0.653710247349823	7.5	2-12,928-918;14-17,916-913	1-1,929-929[UP5];13-13,917-917[SIL];18-21,912-909[UP3]	....((((.(((((((((((.&.))))))))))).))))....	GAAAGAAGGUGAAGAGGAAGA&GCUUUCUCUUCAAUUUCAAUU	3	0.999999999985845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3115_c0_g1_920_TPlot.pdf
TRINITY_DN3115_c0_g1:922	si_s76	TRINITY_DN3115_c0_g1	911	931	922	-23.60	-16.00	0.677966101694915	8	3-13,929-919;15-21,917-911	1-2,931-930[UP5];14-14,918-918[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAGAAGGUGAAGAGGAAGACA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3115_c0_g1_922_TPlot.pdf
TRINITY_DN3115_c0_g1:926	si_s87	TRINITY_DN3115_c0_g1	915	937	926	-32.90	-21.70	0.659574468085106	11	4-6,934-932;7-21,929-915	1-3,937-935[UP5];x-x,931-930[BULt]	(((((((((((((((..(((...&...)))--)))))))))))))))	AGGUGAAGAGGAAGACAAAGACA&UUCCUU--UCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3115_c0_g1_926_TPlot.pdf
TRINITY_DN3115_c0_g1:966	si_s808	TRINITY_DN3115_c0_g1	955	978	966	-28.60	-19.02	0.665034965034965	13	1-9,978-970;12-20,964-956	10-11,969-965[AILt];21-21,955-955[UP3]	.(((((((((.....(((((((((&)))))))))---..))))))))).	GUAGGAGAAGACGAGGACGAAGAU&AUCUUCGUU---ACCUUUUCUUAA	3	0.999999999773328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3115_c0_g1_966_TPlot.pdf
TRINITY_DN3115_c0_g1:969	si_s81	TRINITY_DN3115_c0_g1	957	977	969	-28.90	-18.90	0.653979238754325	8.5	1-5,977-973;8-12,971-967;13-21,965-957	6-7,972-972[AILq];x-x,966-966[BULt]	(((((((((.(((((.-(((((&)))))..)))))-)))))))))	AGGAGAAGACGAGGAC-GAAGA&UUUUCUUUCCUU-UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3115_c0_g1_969_TPlot.pdf
TRINITY_DN3115_c0_g1:970	si_s807	TRINITY_DN3115_c0_g1	956	979	970	-28.90	-20.12	0.696193771626298	12	1-10,979-970;13-21,964-956	11-12,969-965[AILt]	(((((((((.....((((((((((&))))))))))---..)))))))))	UAGGAGAAGACGAGGACGAAGAUA&UAUCUUCGUU---ACCUUUUCUUA	4	0.99998263567328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3115_c0_g1_970_TPlot.pdf
TRINITY_DN3115_c0_g1:971	si_s806	TRINITY_DN3115_c0_g1	957	980	971	-28.60	-19.62	0.686013986013986	11	1-11,980-970;14-21,964-957	12-13,969-965[AILt]	((((((((.....(((((((((((&)))))))))))---..))))))))	AGGAGAAGACGAGGACGAAGAUAA&UUAUCUUCGUU---ACCUUUUCUU	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN3115_c0_g1_971_TPlot.pdf
TRINITY_DN3115_c0_g1:972	si_s805	TRINITY_DN3115_c0_g1	958	981	972	-28.60	-19.92	0.696503496503497	10	1-12,981-970;15-21,964-958	13-14,969-965[AILt]	(((((((.....((((((((((((&))))))))))))---..)))))))	GGAGAAGACGAGGACGAAGAUAAA&UUUAUCUUCGUU---ACCUUUUCU	3	0.999979807954259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3115_c0_g1_972_TPlot.pdf
TRINITY_DN3115_c0_g1:973	si_s804	TRINITY_DN3115_c0_g1	959	982	973	-27.90	-19.72	0.706810035842294	6	1-13,982-970;16-21,964-959	14-15,969-965[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	GAGAAGACGAGGACGAAGAUAAAA&UUUUAUCUUCGUU---ACCUUUUC	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3115_c0_g1_973_TPlot.pdf
TRINITY_DN3115_c0_g1:974	si_s803	TRINITY_DN3115_c0_g1	965	983	974	-26.00	-17.20	0.661538461538462	5.5	2-13,982-971;16-19,970-967	1-1,983-983[UP5];14-15,x-x[BULq];20-21,966-965[UP3]	..((((--((((((((((((.&.))))))))))))..))))..	ACGAGG--ACGAAGAUAAAAA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3115_c0_g1_974_TPlot.pdf
TRINITY_DN3115_c0_g1:975	si_s802	TRINITY_DN3115_c0_g1	966	984	975	-26.40	-17.20	0.651515151515151	6.5	3-14,982-971;17-20,970-967	1-2,984-983[UP5];15-16,x-x[BULq];21-21,966-966[UP3]	.((((--((((((((((((..&..))))))))))))..)))).	CGAGG--ACGAAGAUAAAAAA&UAUUUUAUCUUCGUUACCUUU	3	0.999999999999547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3115_c0_g1_975_TPlot.pdf
TRINITY_DN3115_c1_g1:16	si_a312	TRINITY_DN3115_c1_g1	5	26	16	-31.20	-21.20	0.67948717948718	13	1-7,26-20;12-18,14-8	8-11,19-15[AILt];19-21,7-5[UP3]	...(((((((.....(((((((&)))))))-....)))))))...	CGUUCAUGGAGGGCCUCCAAGC&GCUUGGA-UUUAUCCAUGAUUU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN3115_c1_g1_16_TPlot.pdf
TRINITY_DN3115_c1_g1:17	si_a311	TRINITY_DN3115_c1_g1	6	27	17	-32.70	-21.60	0.660550458715596	13	2-8,26-20;13-19,14-8	1-1,27-27[UP5];9-12,19-15[AILt];20-21,7-6[UP3]	..(((((((.....(((((((.&.)))))))-....)))))))..	GUUCAUGGAGGGCCUCCAAGCU&CGCUUGGA-UUUAUCCAUGAUU	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN3115_c1_g1_17_TPlot.pdf
TRINITY_DN3117_c0_g1:10109	si_a763	TRINITY_DN3117_c0_g1	10098	10118	10109	-28.80	-18.80	0.652777777777778	11	5-20,10114-10099	1-4,10118-10115[UP5];21-21,10098-10098[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAUUAGUCGAAAACUACGU&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999999088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3117_c0_g1_10109_TPlot.pdf
TRINITY_DN3117_c0_g1:10306	si_s72	TRINITY_DN3117_c0_g1	10295	10315	10306	-24.10	-16.50	0.684647302904564	7.5	1-4,10315-10312;7-9,10309-10307;11-21,10305-10295	5-6,10311-10310[SIL];10-10,10306-10306[SIL]	(((((((((((.(((..((((&))))..))).)))))))))))	AAGGGAAGAAACGAAUCAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3117_c0_g1_10306_TPlot.pdf
TRINITY_DN3117_c0_g1:4102	si_a763	TRINITY_DN3117_c0_g1	4092	4112	4102	-28.80	-19.40	0.673611111111111	6.5	1-5,4112-4108;6-13,4106-4099;16-20,4097-4093	x-x,4107-4107[BULt];14-15,4098-4098[AILq];21-21,4092-4092[UP3]	.(((((.-((((((((.(((((&)))))-))))))))..))))).	AGAGUCU-UCAGAAACUCCAAA&UUUGG-GUUUUUGAUUGAUUCA	3	0.999999877072956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3117_c0_g1_4102_TPlot.pdf
TRINITY_DN3117_c0_g1:4138	si_s189	TRINITY_DN3117_c0_g1	4128	4147	4138	-27.90	-19.00	0.681003584229391	7	3-10,4145-4138;12-21,4137-4128	1-2,4147-4146[UP5];11-11,x-x[BULq]	((((((((((-((((((((..&..)))))))).))))))))))	CAUUCCGAGG-AAUCGUUAAA&AGUAACGAUUAUUUUGGAAUG	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN3117_c0_g1_4138_TPlot.pdf
TRINITY_DN3117_c0_g1:4543	si_a401	TRINITY_DN3117_c0_g1	4532	4552	4543	-22.60	-14.70	0.650442477876106	9.5	1-6,4552-4547;8-17,4545-4536	7-7,4546-4546[SIL];18-21,4535-4532[UP3]	....((((((((((.((((((&)))))).))))))))))....	AAAAGAACAAGAUAUUUCUGU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN3117_c0_g1_4543_TPlot.pdf
TRINITY_DN3117_c0_g1:4545	si_a399	TRINITY_DN3117_c0_g1	4534	4554	4545	-22.60	-14.70	0.650442477876106	10	3-8,4552-4547;10-19,4545-4536	1-2,4554-4553[UP5];9-9,4546-4546[SIL];20-21,4535-4534[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	AAGAACAAGAUAUUUCUGUCG&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999999002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3117_c0_g1_4545_TPlot.pdf
TRINITY_DN3117_c0_g1:5236	si_a319	TRINITY_DN3117_c0_g1	5225	5249	5236	-22.40	-14.70	0.65625	14	2-9,5248-5241;10-20,5236-5226	1-1,5249-5249[UP5];x-x,5240-5237[BULt];21-21,5225-5225[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	CAUAGAAGAAUUAACAGUGGAUGAU&UUUAUCCAU----GAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3117_c0_g1_5236_TPlot.pdf
TRINITY_DN3117_c0_g1:7435	si_s521	TRINITY_DN3117_c0_g1	7424	7447	7435	-23.90	-16.04	0.671129707112971	11	1-4,7447-7444;6-19,7439-7426	5-5,7443-7440[AILt];20-21,7425-7424[UP3]	..((((((((((((((....((((&))))---.))))))))))))))..	UCAAUGAUUUCGAAUUUUCCGGAA&UUCU---UAAUUCGAAAUCAUUUU	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN3117_c0_g1_7435_TPlot.pdf
TRINITY_DN3117_c0_g1:7892	si_a493	TRINITY_DN3117_c0_g1	7880	7900	7892	-29.50	-19.50	0.661016949152542	5.5	2-5,7899-7896;7-14,7895-7888;15-21,7886-7880	1-1,7900-7900[UP5];6-6,x-x[BULq];x-x,7887-7887[BULt]	(((((((.((((((((-((((.&.)))).))))))))-)))))))	AGGACGAUAAAGCGAC-UAUUG&GAAUAUGUCGUUUU-UCGUCUU	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN3117_c0_g1_7892_TPlot.pdf
TRINITY_DN3117_c0_g1:8991	si_a502	TRINITY_DN3117_c0_g1	8980	9000	8991	-32.10	-22.80	0.710280373831776	9	1-4,9000-8997;7-18,8994-8983	5-6,8996-8995[SIL];19-21,8982-8980[UP3]	...((((((((((((..((((&))))..))))))))))))...	AAGCUGAGGAAGACGUUGAAC&GUUUUUCGUCUUCCUUGGAAU	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3117_c0_g1_8991_TPlot.pdf
TRINITY_DN3117_c0_g1:8993	si_a500	TRINITY_DN3117_c0_g1	8982	9008	8993	-34.40	-23.40	0.680232558139535	17	1-8,9008-9001;9-20,8994-8983	x-x,9000-8995[BULt];21-21,8982-8982[UP3]	.((((((((((((......((((((((&))))))))------)))))))))))).	GCUGAGGAAGACGUUGAACAGGGACGA&UCGUUUUU------CGUCUUCCUUGGA	4	0.99999860059085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3117_c0_g1_8993_TPlot.pdf
TRINITY_DN3117_c0_g1:8994	si_a499	TRINITY_DN3117_c0_g1	8983	9006	8994	-35.20	-24.00	0.681818181818182	12	1-3,9006-9004;4-7,9000-8997;10-21,8994-8983	x-x,9003-9001[BULt];8-9,8996-8995[SIL]	((((((((((((..((((...(((&)))---))))..))))))))))))	CUGAGGAAGACGUUGAACAGGGAC&GUC---GUUUUUCGUCUUCCUUGG	3	0.999999897547806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3117_c0_g1_8994_TPlot.pdf
TRINITY_DN3117_c0_g1:9110	si_a218	TRINITY_DN3117_c0_g1	9098	9119	9110	-26.60	-17.30	0.650375939849624	11	5-13,9115-9107;14-21,9105-9098	1-4,9119-9116[UP5];x-x,9106-9106[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	UGGGAGCGCUGAGUUUGAAGUC&CUAAUUAAACUCA-UGUUUCUA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN3117_c0_g1_9110_TPlot.pdf
TRINITY_DN3117_c0_g1:9112	si_a216	TRINITY_DN3117_c0_g1	9100	9119	9112	-28.30	-18.40	0.65017667844523	7.5	1-4,9119-9116;7-15,9115-9107;16-21,9105-9100	5-6,x-x[BULq];x-x,9106-9106[BULt]	((((((.(((((((((--((((&))))..)))))))))-))))))	GGAGCGCUGAGUUUGA--AGUC&GACUAAUUAAACUCA-UGUUUC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a216_TRINITY_DN3117_c0_g1_9112_TPlot.pdf
TRINITY_DN3117_c0_g1:9151	si_a502	TRINITY_DN3117_c0_g1	9140	9168	9151	-32.10	-21.60	0.672897196261682	22	1-7,9168-9162;8-18,9153-9143	x-x,9161-9154[BULt];19-21,9142-9140[UP3]	...(((((((((((........(((((((&)))))))--------)))))))))))...	UGACCAAGGAGGAUAUGAUGGAGAAGAAC&GUUUUUC--------GUCUUCCUUGGAAU	4	0.999999999827311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3117_c0_g1_9151_TPlot.pdf
TRINITY_DN3117_c0_g1:9152	si_a501	TRINITY_DN3117_c0_g1	9141	9169	9152	-33.50	-23.70	0.707462686567164	21	1-8,9169-9162;9-19,9153-9143	x-x,9161-9154[BULt];20-21,9142-9141[UP3]	..(((((((((((........((((((((&))))))))--------)))))))))))..	GACCAAGGAGGAUAUGAUGGAGAAGAACG&CGUUUUUC--------GUCUUCCUUGGAA	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3117_c0_g1_9152_TPlot.pdf
TRINITY_DN3117_c0_g1:9153	si_a500	TRINITY_DN3117_c0_g1	9142	9170	9153	-34.40	-25.10	0.729651162790698	19.5	1-9,9170-9162;10-20,9153-9143	x-x,9161-9154[BULt];21-21,9142-9142[UP3]	.(((((((((((........(((((((((&)))))))))--------))))))))))).	ACCAAGGAGGAUAUGAUGGAGAAGAACGA&UCGUUUUUC--------GUCUUCCUUGGA	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3117_c0_g1_9153_TPlot.pdf
TRINITY_DN3117_c0_g1:9164	si_a76	TRINITY_DN3117_c0_g1	9153	9173	9164	-21.20	-14.10	0.665094339622642	7.5	2-12,9172-9162;14-19,9160-9155	1-1,9173-9173[UP5];13-13,9161-9161[SIL];20-21,9154-9153[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	UAUGAUGGAGAAGAACGAUUG&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3117_c0_g1_9164_TPlot.pdf
TRINITY_DN3117_c0_g1:9317	si_s88	TRINITY_DN3117_c0_g1	9302	9326	9317	-34.80	-25.10	0.721264367816092	14	2-11,9325-9316;12-20,9311-9303	1-1,9326-9326[UP5];x-x,9315-9312[BULt];21-21,9302-9302[UP3]	.(((((((((....((((((((((.&.))))))))))----))))))))).	AGGGCGAAGAGGCGGGAGGAGAGGC&UCCUUUCUUCU----UCUUCGCUUC	4	0.999977754800744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3117_c0_g1_9317_TPlot.pdf
TRINITY_DN3117_c0_g1:9379	si_s796	TRINITY_DN3117_c0_g1	9367	9390	9379	-30.30	-19.70	0.65016501650165	10	1-3,9390-9388;4-7,9386-9383;8-10,9381-9379;11-21,9377-9367	x-x,9387-9387[BULt];x-x,9382-9382[BULt];x-x,9378-9378[BULt]	(((((((((((.(((.((((.(((&)))-))))-)))-)))))))))))	AACGAAGAUGACGAUAGCGGUGCU&AGC-UCGU-AUU-UUAUCUUCGUU	4	0.999999989922738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3117_c0_g1_9379_TPlot.pdf
TRINITY_DN3117_c0_g1:9672	si_s891	TRINITY_DN3117_c0_g1	9661	9681	9672	-29.60	-20.80	0.702702702702703	12.5	6-19,9676-9663	1-5,9681-9677[UP5];20-21,9662-9661[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGAAGAGGAAGUCUAAACCC&AUAAAUAGGCUUUCUCUUCAA	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN3117_c0_g1_9672_TPlot.pdf
TRINITY_DN31185_c0_g1:52	si_s94	TRINITY_DN31185_c0_g1	39	61	52	-35.50	-24.10	0.67887323943662	5.5	1-8,61-54;10-15,52-47;16-21,44-39	9-9,53-53[SIL];x-x,46-45[BULt]	((((((..((((((.((((((((&)))))))).))))))--))))))	UAAUCCUUGAAGUGCAGAAGAAG&CUUCUUCUUCGCUUC--GGAUUG	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN31185_c0_g1_52_TPlot.pdf
TRINITY_DN31185_c0_g1:54	si_s92	TRINITY_DN31185_c0_g1	41	63	54	-34.90	-24.70	0.707736389684814	4.5	1-10,63-54;12-17,52-47;18-21,44-41	11-11,53-53[SIL];x-x,46-45[BULt]	((((..((((((.((((((((((&)))))))))).))))))--))))	AUCCUUGAAGUGCAGAAGAAGAA&UUCUUCUUCUUCGCUUC--GGAU	2	0.997754019103068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN31185_c0_g1_54_TPlot.pdf
TRINITY_DN31185_c0_g1:55	si_s91	TRINITY_DN31185_c0_g1	42	64	55	-34.70	-23.70	0.682997118155619	5.5	2-11,63-54;13-18,52-47;19-21,44-42	1-1,64-64[UP5];12-12,53-53[SIL];x-x,46-45[BULt]	(((..((((((.((((((((((.&.)))))))))).))))))--)))	UCCUUGAAGUGCAGAAGAAGAAG&UUUCUUCUUCUUCGCUUC--GGA	0	0.396977216196534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN31185_c0_g1_55_TPlot.pdf
TRINITY_DN31185_c0_g1:56	si_s90	TRINITY_DN31185_c0_g1	45	65	56	-35.30	-23.40	0.662889518413598	4.5	2-12,64-54;14-21,52-45	1-1,65-65[UP5];13-13,53-53[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UUGAAGUGCAGAAGAAGAAGA&CUUUCUUCUUCUUCGCUUCGG	2	0.999999997325737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN31185_c0_g1_56_TPlot.pdf
TRINITY_DN3119_c0_g1:1002	si_s8	TRINITY_DN3119_c0_g1	991	1011	1002	-21.30	-13.90	0.652582159624413	11	4-16,1008-996	1-3,1011-1009[UP5];17-21,995-991[UP3]	.....(((((((((((((...&...))))))))))))).....	CCCUAAGUAAUAAUGAGUUAG&AUUACUUAUUAUUACUAUAUU	3	0.999999988722434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN3119_c0_g1_1002_TPlot.pdf
TRINITY_DN3119_c0_g1:1006	si_s4	TRINITY_DN3119_c0_g1	995	1015	1006	-21.60	-14.08	0.651851851851852	10	2-4,1014-1012;8-20,1008-996	1-1,1015-1015[UP5];5-7,1011-1009[SIL];21-21,995-995[UP3]	.(((((((((((((...(((.&.)))...))))))))))))).	AAGUAAUAAUGAGUUAGAUGC&UUAUAUUACUUAUUAUUACUA	4	0.999997606512646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN3119_c0_g1_1006_TPlot.pdf
TRINITY_DN3119_c0_g1:2419	si_s12	TRINITY_DN3119_c0_g1	2408	2430	2419	-22.80	-14.90	0.653508771929825	6.5	1-9,2430-2422;10-12,2419-2417;14-21,2415-2408	x-x,2421-2420[BULt];13-13,2416-2416[SIL]	((((((((.(((..(((((((((&)))))))))--))).))))))))	AAUCAGUACAGUUUAAUAAUGAG&CUUAUUAUU--ACUAUAUUGAUU	4	0.999992998292024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN3119_c0_g1_2419_TPlot.pdf
TRINITY_DN3119_c0_g1:3486	si_a297	TRINITY_DN3119_c0_g1	3476	3495	3486	-27.20	-18.30	0.672794117647059	4	1-8,3495-3488;10-14,3486-3482;16-21,3481-3476	9-9,3487-3487[SIL];15-15,x-x[BULq]	((((((-(((((.((((((((&)))))))).))))).))))))	CCGAGC-AGUCUAUUUUAAAU&AUUUAAAAAAGAUUCGCUUGG	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN3119_c0_g1_3486_TPlot.pdf
TRINITY_DN311_c0_g1:4316	si_a18	TRINITY_DN311_c0_g1	4305	4327	4316	-26.30	-17.30	0.657794676806084	8.5	2-4,4326-4324;5-19,4321-4307	1-1,4327-4327[UP5];x-x,4323-4322[BULt];20-21,4306-4305[UP3]	..(((((((((((((((..(((.&.)))--)))))))))))))))..	UUACUAGAAAUGAAUAGCUGCUG&AAGC--CUAUUUAUUUUUAGUUC	3	0.999997731878951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN311_c0_g1_4316_TPlot.pdf
TRINITY_DN311_c0_g1:5502	si_s556	TRINITY_DN311_c0_g1	5491	5511	5502	-28.50	-19.00	0.666666666666667	6.5	1-6,5511-5506;8-19,5504-5493	7-7,5505-5505[SIL];20-21,5492-5491[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	UCCCCGAAAAUGUUCAUUUUG&UAGAAUUAAUAUUUUCGGGAC	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN311_c0_g1_5502_TPlot.pdf
TRINITY_DN311_c0_g1:5504	si_s554	TRINITY_DN311_c0_g1	5493	5513	5504	-25.90	-18.20	0.702702702702703	8	3-8,5511-5506;10-21,5504-5493	1-2,5513-5512[UP5];9-9,5505-5505[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	CCCGAAAAUGUUCAUUUUGGU&AAUAGAAUUAAUAUUUUCGGG	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN311_c0_g1_5504_TPlot.pdf
TRINITY_DN31208_c2_g1:680	si_s638	TRINITY_DN31208_c2_g1	664	689	680	-40.30	-27.00	0.669975186104218	15	1-3,689-687;5-10,685-680;11-20,674-665	4-4,686-686[SIL];x-x,679-675[BULt];21-21,664-664[UP3]	.((((((((((.....((((((.(((&))).))))))-----)))))))))).	GAUCGAGGGCAACGGAAAUGCUGACG&CGUAGGCGUU-----UGCCCUCGAUA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN31208_c2_g1_680_TPlot.pdf
TRINITY_DN3120_c0_g2:1580	si_s83	TRINITY_DN3120_c0_g2	1568	1589	1580	-30.90	-21.20	0.686084142394822	4.5	1-7,1589-1583;9-17,1581-1573;18-21,1571-1568	8-8,1582-1582[SIL];x-x,1572-1572[BULt]	((((.(((((((((.(((((((&))))))).)))))))))-))))	GGAGCAAGAAGAAAUGGAAGAA&UUCUUUCCUUUCUUCUU-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3120_c0_g2_1580_TPlot.pdf
TRINITY_DN3120_c0_g2:1582	si_s81	TRINITY_DN3120_c0_g2	1570	1591	1582	-28.90	-19.30	0.667820069204152	5	1-9,1591-1583;11-19,1581-1573;20-21,1571-1570	10-10,1582-1582[SIL];x-x,1572-1572[BULt]	((.(((((((((.(((((((((&))))))))).)))))))))-))	AGCAAGAAGAAAUGGAAGAAGA&UUUUCUUUCCUUUCUUCUU-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3120_c0_g2_1582_TPlot.pdf
TRINITY_DN3120_c0_g2:1584	si_s79	TRINITY_DN3120_c0_g2	1573	1593	1584	-26.20	-18.70	0.713740458015267	7	3-11,1591-1583;13-21,1581-1573	1-2,1593-1592[UP5];12-12,1582-1582[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAGAAGAAAUGGAAGAAGAUA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3120_c0_g2_1584_TPlot.pdf
TRINITY_DN3120_c0_g2:1797	si_a450	TRINITY_DN3120_c0_g2	1786	1806	1797	-25.20	-17.00	0.674603174603175	7.5	3-14,1804-1793;16-19,1791-1788	1-2,1806-1805[UP5];15-15,1792-1792[SIL];20-21,1787-1786[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	AAGUAUCACAACAAUUGUCAG&GAGAUAAUUGUUGUUAUAUAU	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN3120_c0_g2_1797_TPlot.pdf
TRINITY_DN3121_c0_g1:1996	si_a312	TRINITY_DN3121_c0_g1	1985	2004	1996	-31.20	-21.80	0.698717948717949	7	1-4,2004-2001;6-9,1999-1996;11-18,1995-1988	5-5,2000-2000[SIL];10-10,x-x[BULq];19-21,1987-1985[UP3]	...((((((((-((((.((((&)))).)))).))))))))...	AACUCAUGGAU-AAUCGAAGC&GCUUGGAUUUAUCCAUGAUUU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN3121_c0_g1_1996_TPlot.pdf
TRINITY_DN3121_c0_g1:2247	si_s86	TRINITY_DN3121_c0_g1	2236	2257	2247	-32.90	-23.00	0.699088145896657	7.5	1-7,2257-2251;8-18,2249-2239	x-x,2250-2250[BULt];19-21,2238-2236[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	ACAGAAGAAGAAGAGGAGGAGG&UUUCCUU-UCUUCUUCUUCGCU	3	0.999999999970662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3121_c0_g1_2247_TPlot.pdf
TRINITY_DN3121_c0_g1:2255	si_s808	TRINITY_DN3121_c0_g1	2244	2264	2255	-28.60	-19.90	0.695804195804196	11	3-9,2262-2256;11-19,2254-2246	1-2,2264-2263[UP5];10-10,2255-2255[SIL];20-21,2245-2244[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AGAAGAGGAGGAGGCGGAGGA&AUCUUCGUUACCUUUUCUUAA	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3121_c0_g1_2255_TPlot.pdf
TRINITY_DN3121_c0_g1:2290	si_s69	TRINITY_DN3121_c0_g1	2279	2298	2290	-23.40	-18.20	0.777777777777778	8	3-7,2296-2292;9-21,2291-2279	1-2,2298-2297[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAGAGAAAGAAGA-AGAGGGC&AACUUCUAUUUUUUUUCUUUC	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3121_c0_g1_2290_TPlot.pdf
TRINITY_DN3121_c0_g1:2306	si_a494	TRINITY_DN3121_c0_g1	2293	2315	2306	-29.50	-19.60	0.664406779661017	14	6-13,2310-2303;14-21,2300-2293	1-5,2315-2311[UP5];x-x,2302-2301[BULt]	((((((((..((((((((.....&.....))))))))--))))))))	GAGGGCGAGAAGAACGGCUUCGG&AAUAUGUCGUUUU--UCGUCUUC	2	0.999999899966703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN3121_c0_g1_2306_TPlot.pdf
TRINITY_DN3121_c0_g1:2478	si_s94	TRINITY_DN3121_c0_g1	2467	2487	2478	-35.50	-24.60	0.692957746478873	4.5	1-10,2487-2478;12-13,2476-2475;15-21,2473-2467	11-11,2477-2477[SIL];14-14,2474-2474[SIL]	(((((((.((.((((((((((&)))))))))).)).)))))))	CGAUUCGCGGAGAAGAAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN3121_c0_g1_2478_TPlot.pdf
TRINITY_DN3121_c0_g1:2481	si_s88	TRINITY_DN3121_c0_g1	2470	2490	2481	-34.80	-26.30	0.755747126436782	7.5	3-18,2488-2473	1-2,2490-2489[UP5];19-21,2472-2470[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCGCGGAGAAGAAGAAGGAC&UCCUUUCUUCUUCUUCGCUUC	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3121_c0_g1_2481_TPlot.pdf
TRINITY_DN3121_c0_g1:3340	si_a318	TRINITY_DN3121_c0_g1	3329	3349	3340	-22.50	-15.10	0.671111111111111	9.5	4-14,3346-3336;16-19,3334-3331	1-3,3349-3347[UP5];15-15,3335-3335[SIL];20-21,3330-3329[UP3]	..((((.(((((((((((...&...))))))))))).))))..	ACAAGAUAAUCAUGGAUGUGG&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999994191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3121_c0_g1_3340_TPlot.pdf
TRINITY_DN3121_c0_g1:3474	si_s536	TRINITY_DN3121_c0_g1	3463	3483	3474	-27.70	-20.20	0.729241877256318	10	1-9,3483-3475;11-17,3473-3467	10-10,3474-3474[SIL];18-21,3466-3463[UP3]	....(((((((.(((((((((&))))))))).)))))))....	CCUCUGAUCGGCUCGAGGGUG&CAUUUUUGAUCCGAUCAAAAU	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN3121_c0_g1_3474_TPlot.pdf
TRINITY_DN3121_c0_g1:3476	si_s534	TRINITY_DN3121_c0_g1	3465	3485	3476	-28.80	-22.90	0.795138888888889	8	1-11,3485-3475;13-19,3473-3467	12-12,3474-3474[SIL];20-21,3466-3465[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UCUGAUCGGCUCGAGGGUGAU&AUCAUUUUUGAUCCGAUCAAA	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN3121_c0_g1_3476_TPlot.pdf
TRINITY_DN3121_c0_g1:3551	si_a721	TRINITY_DN3121_c0_g1	3539	3560	3551	-35.10	-23.30	0.663817663817664	11.5	4-7,3557-3554;9-16,3552-3545;18-20,3542-3540	1-3,3560-3558[UP5];8-8,3553-3553[SIL];17-17,3544-3543[AILt];21-21,3539-3539[UP3]	.(((..((((((((.((((...&...)))).))))))))-.))).	UGGAAGGCCCGAGUUGCGAGGC&UAAUCGUUACUCGGGC-AUCUU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN3121_c0_g1_3551_TPlot.pdf
TRINITY_DN3121_c0_g1:3552	si_a720	TRINITY_DN3121_c0_g1	3540	3561	3552	-35.30	-23.30	0.660056657223796	12.5	5-8,3557-3554;10-17,3552-3545;19-21,3542-3540	1-4,3561-3558[UP5];9-9,3553-3553[SIL];18-18,3544-3543[AILt]	(((..((((((((.((((....&....)))).))))))))-.)))	GGAAGGCCCGAGUUGCGAGGCU&AUAAUCGUUACUCGGGC-AUCU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN3121_c0_g1_3552_TPlot.pdf
TRINITY_DN3121_c0_g1:3554	si_a718	TRINITY_DN3121_c0_g1	3543	3563	3554	-32.60	-22.10	0.677914110429448	16	7-10,3557-3554;12-19,3552-3545	1-6,3563-3558[UP5];11-11,3553-3553[SIL];20-21,3544-3543[UP3]	..((((((((.((((......&......)))).))))))))..	AGGCCCGAGUUGCGAGGCUGC&AAAUAAUCGUUACUCGGGCAU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN3121_c0_g1_3554_TPlot.pdf
TRINITY_DN3121_c0_g1:3594	si_a508	TRINITY_DN3121_c0_g1	3583	3603	3594	-36.30	-25.60	0.705234159779614	6	1-7,3603-3597;10-21,3594-3583	8-9,3596-3595[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	CUUUAUAUUCCAUCGAAGGCG&CGUCUUCCUUGGAAUGUAAGG	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN3121_c0_g1_3594_TPlot.pdf
TRINITY_DN3121_c0_g1:3595	si_a507	TRINITY_DN3121_c0_g1	3584	3604	3595	-34.90	-23.40	0.670487106017192	6.5	1-8,3604-3597;11-21,3594-3584	9-10,3596-3595[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	UUUAUAUUCCAUCGAAGGCGG&UCGUCUUCCUUGGAAUGUAAG	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN3121_c0_g1_3595_TPlot.pdf
TRINITY_DN3121_c0_g1:5793	si_s628	TRINITY_DN3121_c0_g1	5782	5803	5793	-35.40	-24.40	0.689265536723164	10	1-3,5803-5801;5-9,5799-5795;10-18,5793-5785	4-4,5800-5800[SIL];x-x,5794-5794[BULt];19-21,5784-5782[UP3]	...(((((((((.(((((.(((&))).)))))-)))))))))...	CAUCGCCUACGACGGGGACCGC&GCGAUCUUU-UCGUAGGCGUUU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN3121_c0_g1_5793_TPlot.pdf
TRINITY_DN3122_c0_g1:723	si_s79	TRINITY_DN3122_c0_g1	711	732	723	-26.20	-18.80	0.717557251908397	5.5	1-4,732-729;6-18,727-715;19-21,713-711	5-5,728-728[SIL];x-x,714-714[BULt]	(((.(((((((((((((.((((&)))).)))))))))))))-)))	AAGUGAGAAAGGAAAGGCAAGA&UUUUUUCUUUCCUUUCUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3122_c0_g1_723_TPlot.pdf
TRINITY_DN3122_c0_g1:726	si_s76	TRINITY_DN3122_c0_g1	715	735	726	-23.60	-18.30	0.775423728813559	8.5	3-7,733-729;9-21,727-715	1-2,735-734[UP5];8-8,728-728[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGAAAGGAAAGGCAAGAGUU&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999984885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3122_c0_g1_726_TPlot.pdf
TRINITY_DN3123_c0_g1:3082	si_a67	TRINITY_DN3123_c0_g1	3073	3091	3082	-27.20	-17.98	0.661029411764706	9	1-11,3091-3081;16-21,3078-3073	12-15,3080-3079[AILq]	((((((..--(((((((((((&)))))))))))....))))))	GAGAGAGG--UUGGAGGGAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.999999957087422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3123_c0_g1_3082_TPlot.pdf
TRINITY_DN3123_c0_g1:3421	si_a674	TRINITY_DN3123_c0_g1	3410	3430	3421	-34.70	-22.70	0.654178674351585	10.5	2-9,3429-3422;11-17,3420-3414;19-20,3412-3411	1-1,3430-3430[UP5];10-10,3421-3421[SIL];18-18,3413-3413[SIL];21-21,3410-3410[UP3]	.((.(((((((.((((((((.&.)))))))).))))))).)).	UGCGGCGUGAGGGAGGGGUUG&UGAUUCCUUAUUCACGCGGUU	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN3123_c0_g1_3421_TPlot.pdf
TRINITY_DN31245_c0_g1:693	si_s533	TRINITY_DN31245_c0_g1	682	702	693	-28.80	-19.30	0.670138888888889	7	2-17,701-686;19-20,684-683	1-1,702-702[UP5];18-18,685-685[SIL];21-21,682-682[UP3]	.((.((((((((((((((((.&.)))))))))))))))).)).	CUGUUUGGGUUAAAGGUGAUA&AAUCAUUUUUGAUCCGAUCAA	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN31245_c0_g1_693_TPlot.pdf
TRINITY_DN31248_c0_g1:214	si_a715	TRINITY_DN31248_c0_g1	203	226	214	-33.30	-22.10	0.663663663663664	9	1-3,226-224;5-8,221-218;9-20,215-204	4-4,223-222[AILt];x-x,217-216[BULt];21-21,203-203[UP3]	.((((((((((((..((((..(((&)))-.))))--)))))))))))).	ACCGAGUAACGAUAUUAUUAGUGG&CCA-AAAUA--AUCGUUACUCGGG	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a715_TRINITY_DN31248_c0_g1_214_TPlot.pdf
TRINITY_DN3124_c0_g1:589	si_a482	TRINITY_DN3124_c0_g1	575	598	589	-26.70	-18.00	0.674157303370786	11.5	3-10,596-589;11-21,585-575	1-2,598-597[UP5];x-x,588-586[BULt]	(((((((((((...((((((((..&..))))))))---)))))))))))	CGACAUGUUUUGGAAUAUAACGGA&AUUGUUAUAU---AGAAUAUGUCG	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN3124_c0_g1_589_TPlot.pdf
TRINITY_DN31256_c0_g3:281	si_s86	TRINITY_DN31256_c0_g3	270	293	281	-32.90	-23.30	0.708206686930091	14.5	4-7,290-287;8-20,283-271	1-3,293-291[UP5];x-x,286-284[BULt];21-21,270-270[UP3]	.(((((((((((((...((((...&...))))---))))))))))))).	UGCGAAGGAGAAGGACCGAGGUUA&UUUCCUU---UCUUCUUCUUCGCU	4	0.999999997197659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN31256_c0_g3_281_TPlot.pdf
TRINITY_DN3129_c0_g2:562	si_a363	TRINITY_DN3129_c0_g2	551	571	562	-26.40	-19.00	0.71969696969697	6.5	2-19,570-553	1-1,571-571[UP5];20-21,552-551[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAUUUUGGUUUGAUCAGAAUC&UAUUUUGAUCGGAUCAAAAAU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN3129_c0_g2_562_TPlot.pdf
TRINITY_DN312_c0_g1:1578	si_a704	TRINITY_DN312_c0_g1	1567	1587	1578	-29.30	-20.70	0.706484641638225	6.5	2-14,1586-1574;16-18,1572-1570	1-1,1587-1587[UP5];15-15,1573-1573[SIL];19-21,1569-1567[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	UCAGUUCUGGAAUGUACUAGA&ACUGGUACAUUCCAAAAUAAU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN312_c0_g1_1578_TPlot.pdf
TRINITY_DN312_c0_g1:2532	si_s65	TRINITY_DN312_c0_g1	2521	2541	2532	-26.00	-18.20	0.7	9	3-10,2539-2532;12-21,2530-2521	1-2,2541-2540[UP5];11-11,2531-2531[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	GGAGAGAAGUCGAGGUUGUCU&UAGCAACUUCUAUUUUUUUUC	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN312_c0_g1_2532_TPlot.pdf
TRINITY_DN312_c0_g1:3397	si_a501	TRINITY_DN312_c0_g1	3385	3406	3397	-33.50	-22.30	0.665671641791045	7	1-3,3406-3404;5-15,3402-3392;16-17,3390-3389;19-20,3387-3386	4-4,3403-3403[SIL];x-x,3391-3391[BULt];18-18,3388-3388[SIL];21-21,3385-3385[UP3]	.((.((.(((((((((((.(((&))).)))))))))))-)).)).	AUCGGAGGGGAGACGAGACACG&CGUUUUUCGUCUUCC-UUGGAA	2	0.999998312878867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN312_c0_g1_3397_TPlot.pdf
TRINITY_DN312_c0_g1:3401	si_a497	TRINITY_DN312_c0_g1	3390	3412	3401	-32.00	-22.70	0.709375	13	3-7,3410-3406;9-21,3402-3390	1-2,3412-3411[UP5];8-8,3405-3403[AILt]	(((((((((((((...(((((..&..)))))--.)))))))))))))	AGGGGAGACGAGACACGCGAUGG&AUGUCGU--UUUUCGUCUUCCUU	2	0.999495604960315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN312_c0_g1_3401_TPlot.pdf
TRINITY_DN3130_c0_g1:854	si_s9	TRINITY_DN3130_c0_g1	843	867	854	-22.90	-15.06	0.65764192139738	15	2-8,866-860;11-21,853-843	1-1,867-867[UP5];9-10,859-854[AILt]	(((((((((((......(((((((.&.)))))))----..)))))))))))	CAAUAUAGUGAAUAUUUAUAGGUAU&UUACUUAU----UAUUACUAUAUUG	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN3130_c0_g1_854_TPlot.pdf
TRINITY_DN3131_c0_g1:383	si_a897	TRINITY_DN3131_c0_g1	372	392	383	-21.20	-15.30	0.721698113207547	9	3-18,390-375	1-2,392-391[UP5];19-21,374-372[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGGAUAUUACUUGUUGUUGAC&AGUAAUAAUAAGUAAUAUAAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN3131_c0_g1_383_TPlot.pdf
TRINITY_DN3131_c0_g1:384	si_a896	TRINITY_DN3131_c0_g1	373	393	384	-21.60	-15.30	0.708333333333333	10	4-19,390-375	1-3,393-391[UP5];20-21,374-373[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGAUAUUACUUGUUGUUGACG&UAGUAAUAAUAAGUAAUAUAA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN3131_c0_g1_384_TPlot.pdf
TRINITY_DN3131_c0_g1:385	si_a895	TRINITY_DN3131_c0_g1	374	394	385	-21.70	-15.30	0.705069124423963	11	5-20,390-375	1-4,394-391[UP5];21-21,374-374[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAUAUUACUUGUUGUUGACGU&AUAGUAAUAAUAAGUAAUAUA	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN3131_c0_g1_385_TPlot.pdf
TRINITY_DN3131_c0_g1:441	si_s804	TRINITY_DN3131_c0_g1	430	454	441	-27.90	-18.88	0.676702508960573	13.5	1-9,454-446;11-21,440-430	10-10,445-441[AILt]	(((((((((((.....(((((((((&)))))))))----.)))))))))))	GGAGAGGUGGCAUACAAAGAUAGAA&UUUUAUCUU----CGUUACCUUUUC	3	0.999999988256462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3131_c0_g1_441_TPlot.pdf
TRINITY_DN3131_c0_g1:620	si_s801	TRINITY_DN3131_c0_g1	605	629	620	-28.20	-19.10	0.677304964539007	11	4-15,626-615;16-21,610-605	1-3,629-627[UP5];x-x,614-611[BULt]	((((((....((((((((((((...&...))))))))))))----))))))	GAGGUGGUCUACGAAGAUAGAAACU&GUAUUUUAUCUUCGU----UACCUU	4	0.999971501982316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN3131_c0_g1_620_TPlot.pdf
TRINITY_DN31328_c0_g1:587	si_a17	TRINITY_DN31328_c0_g1	576	596	587	-24.30	-15.80	0.650205761316872	11	4-19,593-578	1-3,596-594[UP5];20-21,577-576[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUUUGAAAAUAAGUGGGUGGG&AAAGCCUAUUUAUUUUUAGUU	2	0.999999220137474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN31328_c0_g1_587_TPlot.pdf
TRINITY_DN3132_c0_g1:959	si_a784	TRINITY_DN3132_c0_g1	948	968	959	-24.70	-16.50	0.668016194331984	8	2-6,967-963;8-20,961-949	1-1,968-968[UP5];7-7,962-962[SIL];21-21,948-948[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UGGGUAGAGGAGUACAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3132_c0_g1_959_TPlot.pdf
TRINITY_DN31346_c0_g2:171	si_a464	TRINITY_DN31346_c0_g2	160	180	171	-19.60	-13.10	0.668367346938775	10	1-14,180-167	15-21,166-160[UP3]	.......((((((((((((((&)))))))))))))).......	AGAUUUCACGUAUUGUGUAUA&UAUAUAUAAUAUGUAAUUAUU	2	0.99442823870057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN31346_c0_g2_171_TPlot.pdf
TRINITY_DN31355_c0_g2:18	si_s75	TRINITY_DN31355_c0_g2	7	27	18	-24.00	-16.20	0.675	6	3-15,25-13;17-21,11-7	1-2,27-26[UP5];16-16,12-12[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAAAAGAAGGAAAAGAAAAC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN31355_c0_g2_18_TPlot.pdf
TRINITY_DN3135_c0_g1:1263	si_a533	TRINITY_DN3135_c0_g1	1254	1272	1263	-39.40	-26.20	0.66497461928934	5.5	1-14,1272-1259;17-19,1258-1256	15-16,x-x[BULq];20-21,1255-1254[UP3]	..(((--((((((((((((((&))))))))))))))..)))..	GCUGA--UGAUCGCUUGCGUG&CACGCGAGCGAUCGGUUCAAU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN3135_c0_g1_1263_TPlot.pdf
TRINITY_DN3135_c0_g1:15404	si_a194	TRINITY_DN3135_c0_g1	15393	15413	15404	-29.40	-21.40	0.727891156462585	11	1-14,15413-15400	15-21,15399-15393[UP3]	.......((((((((((((((&)))))))))))))).......	ACAUUGGAGUGGACGGGGGGA&UUUCCCUGUUCACUAAUAAAU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN3135_c0_g1_15404_TPlot.pdf
TRINITY_DN3135_c0_g1:15405	si_a193	TRINITY_DN3135_c0_g1	15394	15414	15405	-30.90	-21.60	0.699029126213592	11	2-15,15413-15400	1-1,15414-15414[UP5];16-21,15399-15394[UP3]	......((((((((((((((.&.))))))))))))))......	CAUUGGAGUGGACGGGGGGAU&CUUUCCCUGUUCACUAAUAAA	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN3135_c0_g1_15405_TPlot.pdf
TRINITY_DN3135_c0_g1:15406	si_a192	TRINITY_DN3135_c0_g1	15395	15415	15406	-31.90	-21.60	0.677115987460815	12	3-16,15413-15400	1-2,15415-15414[UP5];17-21,15399-15395[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUGGAGUGGACGGGGGGAUC&UCUUUCCCUGUUCACUAAUAA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN3135_c0_g1_15406_TPlot.pdf
TRINITY_DN3135_c0_g1:15407	si_a191	TRINITY_DN3135_c0_g1	15396	15416	15407	-32.00	-21.60	0.675	12.5	4-17,15413-15400	1-3,15416-15414[UP5];18-21,15399-15396[UP3]	....((((((((((((((...&...))))))))))))))....	UUGGAGUGGACGGGGGGAUCG&AUCUUUCCCUGUUCACUAAUA	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN3135_c0_g1_15407_TPlot.pdf
TRINITY_DN3135_c0_g1:15408	si_a190	TRINITY_DN3135_c0_g1	15397	15417	15408	-32.00	-21.60	0.675	13.5	5-18,15413-15400	1-4,15417-15414[UP5];19-21,15399-15397[UP3]	...((((((((((((((....&....))))))))))))))...	UGGAGUGGACGGGGGGAUCGG&UAUCUUUCCCUGUUCACUAAU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN3135_c0_g1_15408_TPlot.pdf
TRINITY_DN3135_c0_g1:15415	si_a746	TRINITY_DN3135_c0_g1	15404	15423	15415	-41.30	-27.40	0.663438256658596	10	1-7,15423-15417;9-11,15416-15414;13-18,15412-15407	8-8,x-x[BULq];12-12,15413-15413[SIL];19-21,15406-15404[UP3]	...((((((.(((-(((((((&))))))).))).))))))...	GACGGGGGGAUCG-GGCCGGG&CCUGGCCAUGAACCUCCUUUG	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN3135_c0_g1_15415_TPlot.pdf
TRINITY_DN3135_c0_g1:15417	si_a743	TRINITY_DN3135_c0_g1	15407	15426	15417	-45.20	-30.80	0.68141592920354	9	3-10,15424-15417;12-14,15416-15414;16-21,15412-15407	1-2,15426-15425[UP5];11-11,x-x[BULq];15-15,15413-15413[SIL]	((((((.(((-((((((((..&..)))))))).))).))))))	GGGGGGAUCG-GGCCGGGGAC&ACCCCUGGCCAUGAACCUCCU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a743_TRINITY_DN3135_c0_g1_15417_TPlot.pdf
TRINITY_DN3135_c0_g1:15418	si_a742	TRINITY_DN3135_c0_g1	15408	15427	15418	-44.90	-29.60	0.65924276169265	10	4-11,15424-15417;13-15,15416-15414;17-21,15412-15408	1-3,15427-15425[UP5];12-12,x-x[BULq];16-16,15413-15413[SIL]	(((((.(((-((((((((...&...)))))))).))).)))))	GGGGGAUCG-GGCCGGGGACG&UACCCCUGGCCAUGAACCUCC	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a742_TRINITY_DN3135_c0_g1_15418_TPlot.pdf
TRINITY_DN3135_c0_g1:15444	si_s385	TRINITY_DN3135_c0_g1	15428	15453	15444	-38.60	-25.90	0.670984455958549	14	1-10,15453-15444;13-15,15441-15439;16-19,15433-15430	11-12,15443-15442[SIL];x-x,15438-15434[BULt];20-21,15429-15428[UP3]	..((((.....(((..((((((((((&))))))))))..)))-----))))..	GCUGGGGCUGCGUGGGAGGCGGGCGC&GUGUCCGCCUUACAU-----UCCAAG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s385_TRINITY_DN3135_c0_g1_15444_TPlot.pdf
TRINITY_DN3135_c0_g1:15445	si_s384	TRINITY_DN3135_c0_g1	15429	15454	15445	-38.50	-28.00	0.727272727272727	12	1-11,15454-15444;14-16,15441-15439;17-20,15433-15430	12-13,15443-15442[SIL];x-x,15438-15434[BULt];21-21,15429-15429[UP3]	.((((.....(((..(((((((((((&)))))))))))..)))-----)))).	CUGGGGCUGCGUGGGAGGCGGGCGCG&CGUGUCCGCCUUACAU-----UCCAA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN3135_c0_g1_15445_TPlot.pdf
TRINITY_DN3135_c0_g1:15446	si_s383	TRINITY_DN3135_c0_g1	15430	15455	15446	-40.90	-27.90	0.682151589242054	11	2-12,15454-15444;15-17,15441-15439;18-21,15433-15430	1-1,15455-15455[UP5];13-14,15443-15442[SIL];x-x,15438-15434[BULt]	((((.....(((..(((((((((((.&.)))))))))))..)))-----))))	UGGGGCUGCGUGGGAGGCGGGCGCGA&GCGUGUCCGCCUUACAU-----UCCA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s383_TRINITY_DN3135_c0_g1_15446_TPlot.pdf
TRINITY_DN3135_c0_g1:18112	si_s78	TRINITY_DN3135_c0_g1	18101	18121	18112	-26.20	-17.50	0.66793893129771	7.5	1-13,18121-18109;15-18,18107-18104	14-14,18108-18108[SIL];19-21,18103-18101[UP3]	...((((.(((((((((((((&))))))))))))).))))...	GUCAGAGCGGGAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3135_c0_g1_18112_TPlot.pdf
TRINITY_DN3135_c0_g1:18114	si_s76	TRINITY_DN3135_c0_g1	18103	18123	18114	-23.60	-18.40	0.779661016949152	6	2-15,18122-18109;17-20,18107-18104	1-1,18123-18123[UP5];16-16,18108-18108[SIL];21-21,18103-18103[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	CAGAGCGGGAAGAAGAAGAAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999823709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3135_c0_g1_18114_TPlot.pdf
TRINITY_DN3135_c0_g1:18118	si_s87	TRINITY_DN3135_c0_g1	18105	18131	18118	-32.90	-22.80	0.693009118541034	11.5	1-4,18131-18128;5-17,18123-18111;18-21,18108-18105	x-x,18127-18124[BULt];x-x,18110-18109[BULt]	((((..(((((((((((((....((((&))))----)))))))))))))--))))	GAGCGGGAAGAAGAAGAAGAGUCGGAA&UUCC----UUUCUUCUUCUUC--GCUU	4	0.999999999999861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3135_c0_g1_18118_TPlot.pdf
TRINITY_DN3135_c0_g1:18119	si_s86	TRINITY_DN3135_c0_g1	18108	18132	18119	-32.90	-22.80	0.693009118541034	11.5	1-5,18132-18128;6-18,18123-18111;20-20,18109-18109	x-x,18127-18124[BULt];19-19,18110-18110[SIL];21-21,18108-18108[UP3]	.(.(((((((((((((....(((((&)))))----))))))))))))).).	CGGGAAGAAGAAGAAGAGUCGGAAG&UUUCC----UUUCUUCUUCUUCGCU	3	0.999999999997802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3135_c0_g1_18119_TPlot.pdf
TRINITY_DN3135_c0_g1:18121	si_a780	TRINITY_DN3135_c0_g1	18109	18130	18121	-27.30	-18.20	0.666666666666667	8	1-3,18130-18128;5-12,18126-18119;14-20,18116-18110	4-4,18127-18127[SIL];13-13,18118-18117[AILt];21-21,18109-18109[UP3]	.(((((((..((((((((.(((&))).))))))))-.))))))).	GGGAAGAAGAAGAAGAGUCGGA&UUCAACUCUUCU-AUUUUUCUA	4	0.999998861596865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN3135_c0_g1_18121_TPlot.pdf
TRINITY_DN3135_c0_g1:18530	si_s69	TRINITY_DN3135_c0_g1	18519	18544	18530	-23.40	-15.72	0.671794871794872	15	2-6,18543-18539;8-21,18532-18519	1-1,18544-18544[UP5];7-7,18538-18533[AILt]	((((((((((((((......(((((.&.)))))-----.))))))))))))))	GAAAGAGAGAAAGUUGUUGCGAAGUA&AACUUC-----UAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3135_c0_g1_18530_TPlot.pdf
TRINITY_DN3135_c0_g1:18599	si_s376	TRINITY_DN3135_c0_g1	18588	18611	18599	-42.50	-30.20	0.710588235294118	11.5	1-7,18611-18605;8-10,18601-18599;13-20,18596-18589	x-x,18604-18602[BULt];11-12,18598-18597[SIL];21-21,18588-18588[UP3]	.((((((((..(((...(((((((&)))))))---)))..)))))))).	AAGGGCGGAGCCGCUUCGAGCGAU&AUCGCUC---GCGUGUCCGCCUUA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN3135_c0_g1_18599_TPlot.pdf
TRINITY_DN3135_c0_g1:18601	si_s374	TRINITY_DN3135_c0_g1	18590	18613	18601	-45.60	-32.60	0.714912280701754	9.5	2-9,18612-18605;10-12,18601-18599;15-21,18596-18590	1-1,18613-18613[UP5];x-x,18604-18602[BULt];13-14,18598-18597[SIL]	(((((((..(((...((((((((.&.))))))))---)))..)))))))	GGGCGGAGCCGCUUCGAGCGAUCC&CGAUCGCUC---GCGUGUCCGCCU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN3135_c0_g1_18601_TPlot.pdf
TRINITY_DN3135_c0_g1:18682	si_s215	TRINITY_DN3135_c0_g1	18671	18692	18682	-37.40	-24.70	0.660427807486631	9	1-6,18692-18687;7-11,18685-18681;14-18,18678-18674	x-x,18686-18686[BULt];12-13,18680-18679[SIL];19-21,18673-18671[UP3]	...(((((..(((((.((((((&))))))-)))))..)))))...	UGUCGCGGGUUCGAAUCGCAAC&GUUGUG-UUCGAAACCGCGUGA	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN3135_c0_g1_18682_TPlot.pdf
TRINITY_DN3135_c0_g1:18683	si_s214	TRINITY_DN3135_c0_g1	18672	18693	18683	-37.10	-26.10	0.703504043126685	7	1-7,18693-18687;8-12,18685-18681;15-19,18678-18674	x-x,18686-18686[BULt];13-14,18680-18679[SIL];20-21,18673-18672[UP3]	..(((((..(((((.(((((((&)))))))-)))))..)))))..	GUCGCGGGUUCGAAUCGCAACU&AGUUGUG-UUCGAAACCGCGUG	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s214_TRINITY_DN3135_c0_g1_18683_TPlot.pdf
TRINITY_DN3135_c0_g1:18912	si_a80	TRINITY_DN3135_c0_g1	18899	18921	18912	-22.10	-14.40	0.65158371040724	12	1-11,18921-18911;13-19,18907-18901	12-12,18910-18908[AILt];20-21,18900-18899[UP3]	..(((((((...(((((((((((&)))))))))))--.)))))))..	GAUUCUUGGAACGAUGAAGAGCA&UGUUUUUCAUU--AUUAAGAAAA	4	0.999999979245478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3135_c0_g1_18912_TPlot.pdf
TRINITY_DN3135_c0_g1:2004	si_s75	TRINITY_DN3135_c0_g1	1992	2013	2004	-24.00	-17.50	0.729166666666667	4.5	1-16,2013-1998;19-21,1994-1992	17-18,1997-1995[AILt]	(((...((((((((((((((((&))))))))))))))))-..)))	AGACUUGGAGGGAAAAAAAAUA&UAUUUUUUUUCUUUCC-UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3135_c0_g1_2004_TPlot.pdf
TRINITY_DN3135_c0_g1:2005	si_s74	TRINITY_DN3135_c0_g1	1994	2014	2005	-25.00	-17.40	0.696	6	2-17,2013-1998	1-1,2014-2014[UP5];18-21,1997-1994[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACUUGGAGGGAAAAAAAAUAU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3135_c0_g1_2005_TPlot.pdf
TRINITY_DN3135_c0_g1:2009	si_s70	TRINITY_DN3135_c0_g1	1998	2018	2009	-25.80	-17.00	0.65891472868217	10	6-21,2013-1998	1-5,2018-2014[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGGGAAAAAAAAUAUAAUC&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3135_c0_g1_2009_TPlot.pdf
TRINITY_DN3135_c0_g1:2020	si_s666	TRINITY_DN3135_c0_g1	2009	2030	2020	-31.30	-20.40	0.651757188498402	9	1-6,2030-2025;8-18,2022-2012	7-7,2024-2023[AILt];19-21,2011-2009[UP3]	...(((((((((((..((((((&))))))-.)))))))))))...	AAAUAUAAUCGAUUGGGGUCCC&GGGAUC-GAAUUGAUUAUAGAA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN3135_c0_g1_2020_TPlot.pdf
TRINITY_DN3135_c0_g1:2161	si_a802	TRINITY_DN3135_c0_g1	2149	2170	2161	-34.70	-22.80	0.657060518731988	6	1-11,2170-2160;13-15,2158-2156;16-17,2154-2153;19-20,2151-2150	12-12,2159-2159[SIL];x-x,2155-2155[BULt];18-18,2152-2152[SIL];21-21,2149-2149[UP3]	.((.((.(((.(((((((((((&))))))))))).)))-)).)).	AUCAUCAGCUACGGAUUGGAGA&UUUCCAAUCCGAAGC-GAAGAA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN3135_c0_g1_2161_TPlot.pdf
TRINITY_DN3135_c0_g1:2166	si_a797	TRINITY_DN3135_c0_g1	2155	2175	2166	-34.10	-22.60	0.662756598240469	10	5-16,2171-2160;18-20,2158-2156	1-4,2175-2172[UP5];17-17,2159-2159[SIL];21-21,2155-2155[UP3]	.(((.((((((((((((....&....)))))))))))).))).	AGCUACGGAUUGGAGAAGCCC&UCUAUUUUCCAAUCCGAAGCG	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a797_TRINITY_DN3135_c0_g1_2166_TPlot.pdf
TRINITY_DN3135_c0_g1:2167	si_a796	TRINITY_DN3135_c0_g1	2156	2176	2167	-32.70	-22.20	0.678899082568807	11	6-17,2171-2160;19-21,2158-2156	1-5,2176-2172[UP5];18-18,2159-2159[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GCUACGGAUUGGAGAAGCCCU&UUCUAUUUUCCAAUCCGAAGC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN3135_c0_g1_2167_TPlot.pdf
TRINITY_DN3135_c0_g1:2248	si_a336	TRINITY_DN3135_c0_g1	2237	2257	2248	-31.20	-22.70	0.727564102564103	11	3-14,2255-2244	1-2,2257-2256[UP5];15-21,2243-2237[UP3]	.......((((((((((((..&..)))))))))))).......	CCCAAUCCGGGACAGGGAAGA&UAUUCCUUGUCCCGAAAAUAU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN3135_c0_g1_2248_TPlot.pdf
TRINITY_DN3135_c0_g1:2250	si_a334	TRINITY_DN3135_c0_g1	2239	2259	2250	-30.70	-22.70	0.739413680781759	13	5-16,2255-2244	1-4,2259-2256[UP5];17-21,2243-2239[UP3]	.....((((((((((((....&....)))))))))))).....	CAAUCCGGGACAGGGAAGACC&UUUAUUCCUUGUCCCGAAAAU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN3135_c0_g1_2250_TPlot.pdf
TRINITY_DN3135_c0_g1:279	si_a557	TRINITY_DN3135_c0_g1	268	288	279	-33.40	-22.10	0.661676646706587	8.5	5-14,284-275;16-21,273-268	1-4,288-285[UP5];15-15,274-274[SIL]	((((((.((((((((((....&....)))))))))).))))))	AUUCGCCGGGAGAUAAAAAUC&UUUCUUUAUCUCCCCGUGAAU	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN3135_c0_g1_279_TPlot.pdf
TRINITY_DN3135_c0_g1:4309	si_s351	TRINITY_DN3135_c0_g1	4298	4318	4309	-29.50	-19.70	0.667796610169492	6.5	1-17,4318-4302	18-21,4301-4298[UP3]	....(((((((((((((((((&)))))))))))))))))....	GGUCUCUGUUUUUUUAUCUUC&GGAGAUAAAGAAAUAGAUUGA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s351_TRINITY_DN3135_c0_g1_4309_TPlot.pdf
TRINITY_DN3135_c0_g1:763	si_s39	TRINITY_DN3135_c0_g1	752	772	763	-22.30	-14.90	0.668161434977579	7	2-9,771-764;11-17,762-756	1-1,772-772[UP5];10-10,763-763[SIL];18-21,755-752[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	ACGACCAAUUAGUAAAGAUUG&AAAUCUUUAAUAAUUGGAUUU	2	0.998764189281505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN3135_c0_g1_763_TPlot.pdf
TRINITY_DN3135_c0_g1:764	si_s38	TRINITY_DN3135_c0_g1	753	773	764	-22.70	-14.90	0.656387665198238	8	3-10,771-764;12-18,762-756	1-2,773-772[UP5];11-11,763-763[SIL];19-21,755-753[UP3]	...(((((((.((((((((..&..)))))))).)))))))...	CGACCAAUUAGUAAAGAUUGU&UAAAUCUUUAAUAAUUGGAUU	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN3135_c0_g1_764_TPlot.pdf
TRINITY_DN3135_c0_g1:9259	si_a148	TRINITY_DN3135_c0_g1	9249	9268	9259	-30.30	-20.30	0.66996699669967	11	3-14,9266-9255;16-19,9254-9251	1-2,9268-9267[UP5];15-15,x-x[BULq];20-21,9250-9249[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	CGGGCC-UGAGGCAGCAGCCG&UCGUUGUUGUUUUAAGGUCAA	4	0.99998465846649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN3135_c0_g1_9259_TPlot.pdf
TRINITY_DN31365_c0_g1:405	si_s315	TRINITY_DN31365_c0_g1	394	415	405	-31.60	-22.20	0.70253164556962	8	2-9,414-407;10-14,405-401;16-20,399-395	1-1,415-415[UP5];x-x,406-406[BULt];15-15,400-400[SIL];21-21,394-394[UP3]	.(((((.(((((.((((((((.&.))))))))-))))).))))).	GUGUGAGAGGAAGGGGCGGAAA&AUUCUGUCC-UUCUUGUUACAA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN31365_c0_g1_405_TPlot.pdf
TRINITY_DN3136_c0_g1:2777	si_s80	TRINITY_DN3136_c0_g1	2766	2792	2777	-28.20	-18.60	0.659574468085106	16.5	1-8,2792-2785;9-19,2778-2768	x-x,2784-2779[BULt];20-21,2767-2766[UP3]	..(((((((((((......((((((((&))))))))------)))))))))))..	GUAGAAGGAGGGAAAUUUCAAGAAGAA&UUUUUCUU------UCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3136_c0_g1_2777_TPlot.pdf
TRINITY_DN3136_c0_g1:2778	si_s79	TRINITY_DN3136_c0_g1	2767	2793	2778	-26.20	-19.00	0.725190839694656	15.5	1-9,2793-2785;10-20,2778-2768	x-x,2784-2779[BULt];21-21,2767-2767[UP3]	.(((((((((((......(((((((((&)))))))))------))))))))))).	UAGAAGGAGGGAAAUUUCAAGAAGAAG&UUUUUUCUU------UCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3136_c0_g1_2778_TPlot.pdf
TRINITY_DN3136_c0_g1:3053	si_a319	TRINITY_DN3136_c0_g1	3042	3062	3053	-22.40	-14.90	0.665178571428572	10	2-11,3061-3052;14-18,3049-3045	1-1,3062-3062[UP5];12-13,3051-3050[SIL];19-21,3044-3042[UP3]	...(((((..((((((((((.&.))))))))))..)))))...	GCGGAAGAUUUUAUGGAUGAU&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3136_c0_g1_3053_TPlot.pdf
TRINITY_DN3136_c0_g1:3054	si_a318	TRINITY_DN3136_c0_g1	3043	3063	3054	-22.50	-14.90	0.662222222222222	10	3-12,3061-3052;15-19,3049-3045	1-2,3063-3062[UP5];13-14,3051-3050[SIL];20-21,3044-3043[UP3]	..(((((..((((((((((..&..))))))))))..)))))..	CGGAAGAUUUUAUGGAUGAUG&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3136_c0_g1_3054_TPlot.pdf
TRINITY_DN3136_c0_g1:3102	si_a319	TRINITY_DN3136_c0_g1	3091	3111	3102	-22.40	-15.60	0.696428571428572	11	4-16,3108-3096	1-3,3111-3109[UP5];17-21,3095-3091[UP3]	.....(((((((((((((...&...))))))))))))).....	UGGAUGAAGAUCAUGGAUCCG&UUUAUCCAUGAUUUUUUUAUU	4	0.99999999410809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3136_c0_g1_3102_TPlot.pdf
TRINITY_DN3138_c0_g1:315	si_a137	TRINITY_DN3138_c0_g1	304	322	315	-26.50	-17.40	0.656603773584906	11.5	4-8,319-315;11-21,314-304	1-3,322-320[UP5];9-10,x-x[BULq]	(((((((((((--(((((...&...)))))..)))))))))))	GCAGCAGCGGU--AUUACGUA&AUAGUAAUUAAUCGUUGUUGU	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN3138_c0_g1_315_TPlot.pdf
TRINITY_DN3139_c0_g1:2185	si_a164	TRINITY_DN3139_c0_g1	2174	2195	2185	-35.60	-23.40	0.657303370786517	7	1-4,2195-2192;6-12,2189-2183;15-20,2180-2175	5-5,2191-2190[AILt];13-14,2182-2181[SIL];21-21,2174-2174[UP3]	.((((((..(((((((..((((&))))-.)))))))..)))))).	AAGACGGUAGAAUAGAGAUGAC&GUCA-AUCUAUUCACCCGUCUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a164_TRINITY_DN3139_c0_g1_2185_TPlot.pdf
TRINITY_DN3139_c0_g1:2724	si_a143	TRINITY_DN3139_c0_g1	2713	2733	2724	-25.10	-17.00	0.677290836653386	11.5	6-20,2728-2714	1-5,2733-2729[UP5];21-21,2713-2713[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUUAAAGCAACAAUGAGAUUU&AUUAAUCGUUGUUGUUUUAAG	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN3139_c0_g1_2724_TPlot.pdf
TRINITY_DN3139_c0_g1:2725	si_a142	TRINITY_DN3139_c0_g1	2714	2734	2725	-23.50	-16.80	0.714893617021277	12.5	7-21,2728-2714	1-6,2734-2729[UP5]	(((((((((((((((......&......)))))))))))))))	UUAAAGCAACAAUGAGAUUUU&AAUUAAUCGUUGUUGUUUUAA	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3139_c0_g1_2725_TPlot.pdf
TRINITY_DN3139_c0_g1:2726	si_a141	TRINITY_DN3139_c0_g1	2715	2735	2726	-23.80	-16.00	0.672268907563025	14.5	8-21,2728-2715	1-7,2735-2729[UP5]	((((((((((((((.......&.......))))))))))))))	UAAAGCAACAAUGAGAUUUUA&UAAUUAAUCGUUGUUGUUUUA	2	0.999998716990705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3139_c0_g1_2726_TPlot.pdf
TRINITY_DN3139_c0_g2:1600	si_a324	TRINITY_DN3139_c0_g2	1588	1610	1600	-27.50	-18.30	0.665454545454546	8	1-2,1610-1609;3-7,1607-1603;9-16,1601-1594;17-21,1592-1588	x-x,1608-1608[BULt];8-8,1602-1602[SIL];x-x,1593-1593[BULt]	(((((.((((((((.(((((.((&))-))))).))))))))-)))))	CAAGGAAAUAAAGACGUCGUAGG&CC-AUGAUUUUUUUAUU-CCUUG	2	0.998748712081398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN3139_c0_g2_1600_TPlot.pdf
TRINITY_DN313_c1_g1:320	si_a149	TRINITY_DN313_c1_g1	308	329	320	-29.40	-19.70	0.670068027210884	11	1-10,329-320;13-20,316-309	11-12,319-317[AILt];21-21,308-308[UP3]	.((((((((...((((((((((&))))))))))-..)))))))).	UUUGGCUUUUGCGGCAACGACG&CGUUGUUGUU-UUAAGGUCAAU	3	0.999996864296552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN313_c1_g1_320_TPlot.pdf
TRINITY_DN313_c1_g1:321	si_a148	TRINITY_DN313_c1_g1	309	330	321	-30.30	-21.00	0.693069306930693	9	1-11,330-320;14-21,316-309	12-13,319-317[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	UUGGCUUUUGCGGCAACGACGA&UCGUUGUUGUU-UUAAGGUCAA	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN313_c1_g1_321_TPlot.pdf
TRINITY_DN313_c1_g1:322	si_a147	TRINITY_DN313_c1_g1	310	331	322	-30.40	-21.10	0.694078947368421	8	1-12,331-320;15-21,316-310	13-14,319-317[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	UGGCUUUUGCGGCAACGACGAU&AUCGUUGUUGUU-UUAAGGUCA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN313_c1_g1_322_TPlot.pdf
TRINITY_DN313_c1_g1:323	si_a146	TRINITY_DN313_c1_g1	305	332	323	-29.70	-21.00	0.707070707070707	11	1-13,332-320;14-21,312-305	x-x,319-313[BULt]	((((((((.......(((((((((((((&)))))))))))))-------))))))))	GACUUUGGCUUUUGCGGCAACGACGAUU&AAUCGUUGUUGUU-------UUAAGGUC	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN313_c1_g1_323_TPlot.pdf
TRINITY_DN313_c1_g1:324	si_a145	TRINITY_DN313_c1_g1	312	333	324	-28.10	-20.00	0.711743772241993	6	1-14,333-320;17-21,316-312	15-16,319-317[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	GCUUUUGCGGCAACGACGAUUA&UAAUCGUUGUUGUU-UUAAGGU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN313_c1_g1_324_TPlot.pdf
TRINITY_DN313_c1_g1:326	si_a143	TRINITY_DN313_c1_g1	315	335	326	-25.10	-19.80	0.788844621513944	4	1-16,335-320;18-21,318-315	17-17,319-319[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UUUGCGGCAACGACGAUUAAU&AUUAAUCGUUGUUGUUUUAAG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN313_c1_g1_326_TPlot.pdf
TRINITY_DN313_c1_g1:327	si_a142	TRINITY_DN313_c1_g1	316	336	327	-23.50	-20.20	0.859574468085106	3.5	1-17,336-320;19-21,318-316	18-18,319-319[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	UUGCGGCAACGACGAUUAAUU&AAUUAAUCGUUGUUGUUUUAA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN313_c1_g1_327_TPlot.pdf
TRINITY_DN313_c1_g1:328	si_a141	TRINITY_DN313_c1_g1	317	337	328	-23.80	-20.10	0.84453781512605	6	2-18,336-320	1-1,337-337[UP5];19-21,319-317[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UGCGGCAACGACGAUUAAUUU&UAAUUAAUCGUUGUUGUUUUA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN313_c1_g1_328_TPlot.pdf
TRINITY_DN313_c1_g1:329	si_a140	TRINITY_DN313_c1_g1	318	338	329	-25.20	-20.10	0.797619047619048	6.5	3-19,336-320	1-2,338-337[UP5];20-21,319-318[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCGGCAACGACGAUUAAUUUA&GUAAUUAAUCGUUGUUGUUUU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN313_c1_g1_329_TPlot.pdf
TRINITY_DN313_c1_g1:330	si_a139	TRINITY_DN313_c1_g1	319	339	330	-25.90	-20.10	0.776061776061776	7.5	4-20,336-320	1-3,339-337[UP5];21-21,319-319[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGGCAACGACGAUUAAUUUAU&AGUAAUUAAUCGUUGUUGUUU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN313_c1_g1_330_TPlot.pdf
TRINITY_DN313_c1_g1:331	si_a138	TRINITY_DN313_c1_g1	320	340	331	-26.30	-20.10	0.76425855513308	8.5	5-21,336-320	1-4,340-337[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGCAACGACGAUUAAUUUAUU&UAGUAAUUAAUCGUUGUUGUU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN313_c1_g1_331_TPlot.pdf
TRINITY_DN313_c1_g1:332	si_a137	TRINITY_DN313_c1_g1	321	341	332	-26.50	-19.70	0.743396226415094	10	6-21,336-321	1-5,341-337[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCAACGACGAUUAAUUUAUUU&AUAGUAAUUAAUCGUUGUUGU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN313_c1_g1_332_TPlot.pdf
TRINITY_DN31408_c0_g1:24	si_a77	TRINITY_DN31408_c0_g1	13	33	24	-22.20	-15.00	0.675675675675676	6.5	2-10,32-24;12-20,22-14	1-1,33-33[UP5];11-11,23-23[SIL];21-21,13-13[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	GCUUGGUAGUUAGAAACAAUA&AAUUGUUUUUCAUUAUUAAGA	4	0.999998684623371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN31408_c0_g1_24_TPlot.pdf
TRINITY_DN3140_c0_g1:856	si_s68	TRINITY_DN3140_c0_g1	843	865	856	-23.10	-15.40	0.666666666666667	10	4-13,862-853;14-21,850-843	1-3,865-863[UP5];x-x,852-851[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	GAAGAAAAAGGAGAUGGAAGAAA&CAACUUCUAUUUU--UUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3140_c0_g1_856_TPlot.pdf
TRINITY_DN3141_c0_g1:1067	si_a502	TRINITY_DN3141_c0_g1	1056	1076	1067	-32.10	-21.10	0.657320872274143	11	1-4,1076-1073;6-17,1071-1060	5-5,1072-1072[SIL];18-21,1059-1056[UP3]	....((((((((((((.((((&)))).))))))))))))....	CCGGCGGGGGAGACGGCAGGC&GUUUUUCGUCUUCCUUGGAAU	3	0.999999999999936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3141_c0_g1_1067_TPlot.pdf
TRINITY_DN3141_c0_g1:2215	si_a496	TRINITY_DN3141_c0_g1	2204	2225	2215	-32.40	-22.50	0.694444444444444	10.5	2-8,2224-2218;11-13,2214-2212;15-21,2210-2204	1-1,2225-2225[UP5];9-10,2217-2215[AILt];14-14,2211-2211[SIL]	(((((((.(((...(((((((.&.)))))))-..))).)))))))	GGGAAGAGGAAUGUGCGGCAUC&UAUGUCGU-UUUUCGUCUUCCU	4	0.999996737848876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3141_c0_g1_2215_TPlot.pdf
TRINITY_DN3142_c0_g1:1546	si_a759	TRINITY_DN3142_c0_g1	1534	1555	1546	-32.60	-22.80	0.699386503067485	8	1-14,1555-1542;15-16,1540-1539	x-x,1541-1541[BULt];17-21,1538-1534[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	UUUUCCACAAGACCCAGAGGAG&CUCCUUUGGGUUUU-UGAUUGA	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN3142_c0_g1_1546_TPlot.pdf
TRINITY_DN3142_c0_g1:1549	si_a756	TRINITY_DN3142_c0_g1	1537	1558	1549	-33.10	-23.10	0.697885196374622	9.5	4-17,1555-1542;18-19,1540-1539	1-3,1558-1556[UP5];x-x,1541-1541[BULt];20-21,1538-1537[UP3]	..((.((((((((((((((...&...))))))))))))))-))..	UCCACAAGACCCAGAGGAGUCG&AACCUCCUUUGGGUUUU-UGAU	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3142_c0_g1_1549_TPlot.pdf
TRINITY_DN31438_c0_g1:3734	si_a21	TRINITY_DN31438_c0_g1	3723	3742	3734	-24.30	-15.80	0.650205761316872	9	1-6,3742-3737;10-19,3734-3725	7-9,3736-3735[AILq];20-21,3724-3723[UP3]	..((((((((((..-((((((&))))))...))))))))))..	CCAGAACUAGAACC-AAUAGG&CCUAUUUAUUUUUAGUUCUAA	4	0.99999999887003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN31438_c0_g1_3734_TPlot.pdf
TRINITY_DN31438_c0_g1:3747	si_a784	TRINITY_DN31438_c0_g1	3735	3756	3747	-24.70	-18.60	0.753036437246964	5.5	2-11,3755-3746;12-19,3744-3737	1-1,3756-3756[UP5];x-x,3745-3745[BULt];20-21,3736-3735[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	CCAAUAGGAAUAAUAGAAGAGA&ACUCUUCUAUU-UUUCUAUUUU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN31438_c0_g1_3747_TPlot.pdf
TRINITY_DN31447_c0_g1:1548	si_a658	TRINITY_DN31447_c0_g1	1537	1557	1548	-33.40	-23.20	0.694610778443114	8	2-15,1556-1543	1-1,1557-1557[UP5];16-21,1542-1537[UP3]	......((((((((((((((.&.))))))))))))))......	CGGAUUUAGGCAUUUCCUGAG&AUCGGGAAAUGCCUAUUGAUU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN31447_c0_g1_1548_TPlot.pdf
TRINITY_DN31447_c0_g1:1549	si_a657	TRINITY_DN31447_c0_g1	1538	1558	1549	-33.80	-23.20	0.686390532544379	9	3-16,1556-1543	1-2,1558-1557[UP5];17-21,1542-1538[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGAUUUAGGCAUUUCCUGAGC&UAUCGGGAAAUGCCUAUUGAU	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN31447_c0_g1_1549_TPlot.pdf
TRINITY_DN31447_c0_g1:1550	si_a656	TRINITY_DN31447_c0_g1	1539	1559	1550	-33.80	-23.20	0.686390532544379	10	4-17,1556-1543	1-3,1559-1557[UP5];18-21,1542-1539[UP3]	....((((((((((((((...&...))))))))))))))....	GAUUUAGGCAUUUCCUGAGCC&AUAUCGGGAAAUGCCUAUUGA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN31447_c0_g1_1550_TPlot.pdf
TRINITY_DN31447_c0_g1:336	si_a406	TRINITY_DN31447_c0_g1	325	345	336	-19.80	-13.70	0.691919191919192	6	1-13,345-333;16-19,330-327	14-15,332-331[SIL];20-21,326-325[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	GGUAAAGCUAAACAAGGCAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.99999999456367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN31447_c0_g1_336_TPlot.pdf
TRINITY_DN3144_c0_g1:789	si_a361	TRINITY_DN3144_c0_g1	778	798	789	-29.00	-19.00	0.655172413793103	7	2-19,797-780	1-1,798-798[UP5];20-21,779-778[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAUUGAUUUGGUUAAAGUAGU&UCUAUUUUGAUCGGAUCAAAA	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN3144_c0_g1_789_TPlot.pdf
TRINITY_DN3144_c0_g1:790	si_a360	TRINITY_DN3144_c0_g1	779	799	790	-29.10	-19.00	0.652920962199313	8	3-20,797-780	1-2,799-798[UP5];21-21,779-779[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AUUGAUUUGGUUAAAGUAGUA&UUCUAUUUUGAUCGGAUCAAA	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN3144_c0_g1_790_TPlot.pdf
TRINITY_DN3144_c0_g1:896	si_s435	TRINITY_DN3144_c0_g1	885	905	896	-20.90	-15.50	0.741626794258373	6.5	2-17,904-889	1-1,905-905[UP5];18-21,888-885[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUAGUAAUAUGUGAUUAUUU&CAAUAAUUACAUAUUAUAUAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN3144_c0_g1_896_TPlot.pdf
TRINITY_DN3145_c0_g1:962	si_s806	TRINITY_DN3145_c0_g1	950	971	962	-28.60	-19.30	0.674825174825175	7.5	1-11,971-961;13-14,959-958;16-20,955-951	12-12,960-960[SIL];15-15,957-956[AILt];21-21,950-950[UP3]	.(((((..((.(((((((((((&))))))))))).))-.))))).	UGGAAAUUGGCGACGAAGAUGA&UUAUCUUCGUUACC-UUUUCUU	3	0.999999999236329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN3145_c0_g1_962_TPlot.pdf
TRINITY_DN3145_c0_g1:963	si_s805	TRINITY_DN3145_c0_g1	951	972	963	-28.60	-19.50	0.681818181818182	6.5	2-12,971-961;14-15,959-958;17-21,955-951	1-1,972-972[UP5];13-13,960-960[SIL];16-16,957-956[AILt]	(((((..((.(((((((((((.&.))))))))))).))-.)))))	GGAAAUUGGCGACGAAGAUGAU&UUUAUCUUCGUUACC-UUUUCU	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3145_c0_g1_963_TPlot.pdf
TRINITY_DN3145_c0_g1:964	si_s804	TRINITY_DN3145_c0_g1	952	973	964	-27.90	-18.40	0.659498207885305	7.5	3-13,971-961;15-16,959-958;18-21,955-952	1-2,973-972[UP5];14-14,960-960[SIL];17-17,957-956[AILt]	((((..((.(((((((((((..&..))))))))))).))-.))))	GAAAUUGGCGACGAAGAUGAUU&UUUUAUCUUCGUUACC-UUUUC	4	0.999999999997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3145_c0_g1_964_TPlot.pdf
TRINITY_DN31484_c0_g1:812	si_a70	TRINITY_DN31484_c0_g1	801	821	812	-23.90	-16.60	0.694560669456067	7	1-3,821-819;5-11,817-811;13-20,809-802	4-4,818-818[SIL];12-12,810-810[SIL];21-21,801-801[UP3]	.((((((((.(((((((.(((&))).))))))).)))))))).	UAUGGAAGAGAGUUUGACAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN31484_c0_g1_812_TPlot.pdf
TRINITY_DN31484_c0_g1:813	si_a69	TRINITY_DN31484_c0_g1	802	822	813	-24.00	-17.30	0.720833333333333	5	1-4,822-819;6-12,817-811;14-21,809-802	5-5,818-818[SIL];13-13,810-810[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	AUGGAAGAGAGUUUGACAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN31484_c0_g1_813_TPlot.pdf
TRINITY_DN3148_c0_g1:795	si_s679	TRINITY_DN3148_c0_g1	785	804	795	-25.20	-16.50	0.654761904761905	7	1-13,804-792;15-16,791-790	14-14,x-x[BULq];17-21,789-785[UP3]	.....((-(((((((((((((&))))))))))))).)).....	GAAUCAC-CAUGUUUCUAUGA&UUAUAGAAACAUGAGUUUAAU	0	0.0979282246228984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN3148_c0_g1_795_TPlot.pdf
TRINITY_DN3148_c0_g1:796	si_s678	TRINITY_DN3148_c0_g1	786	805	796	-25.20	-16.50	0.654761904761905	7	2-14,804-792;16-17,791-790	1-1,805-805[UP5];15-15,x-x[BULq];18-21,789-786[UP3]	....((-(((((((((((((.&.))))))))))))).))....	AAUCAC-CAUGUUUCUAUGAA&AUUAUAGAAACAUGAGUUUAA	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN3148_c0_g1_796_TPlot.pdf
TRINITY_DN3149_c0_g1:1028	si_a489	TRINITY_DN3149_c0_g1	1017	1037	1028	-27.70	-19.40	0.700361010830325	9	4-6,1034-1032;8-21,1030-1017	1-3,1037-1035[UP5];7-7,1031-1031[SIL]	((((((((((((((.(((...&...))).))))))))))))))	CGGAAGACGAUAUACUCUUGA&UAUAGAAUAUGUCGUUUUUCG	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN3149_c0_g1_1028_TPlot.pdf
TRINITY_DN3149_c0_g1:1343	si_a6	TRINITY_DN3149_c0_g1	1332	1352	1343	-29.10	-19.90	0.683848797250859	11.5	4-11,1349-1342;13-18,1340-1335	1-3,1352-1350[UP5];12-12,1341-1341[SIL];19-21,1334-1332[UP3]	...((((((.((((((((...&...)))))))).))))))...	CGAGGGCUUGCUCUUCGAGAU&AAAUUGAAGAGAAAGCCUAUU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN3149_c0_g1_1343_TPlot.pdf
TRINITY_DN3149_c0_g1:1390	si_a526	TRINITY_DN3149_c0_g1	1376	1400	1390	-45.60	-29.90	0.655701754385965	8.5	2-4,1399-1397;6-8,1395-1393;9-13,1391-1387;14-21,1383-1376	1-1,1400-1400[UP5];5-5,1396-1396[SIL];x-x,1392-1392[BULt];x-x,1386-1384[BULt]	((((((((...(((((.(((.(((.&.))).)))-)))))---))))))))	CGGUCGCUGCCCGCGUAGUCAGCCA&AGGCGGAC-ACGCG---AGCGAUCG	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN3149_c0_g1_1390_TPlot.pdf
TRINITY_DN3149_c0_g1:1587	si_s287	TRINITY_DN3149_c0_g1	1572	1596	1587	-35.30	-23.50	0.6657223796034	14.5	2-11,1595-1586;12-16,1581-1577;18-19,1575-1574	1-1,1596-1596[UP5];x-x,1585-1582[BULt];17-17,1576-1576[SIL];20-21,1573-1572[UP3]	..((.(((((....((((((((((.&.))))))))))----))))).))..	ACUCGAGUCGGUCCGCUGGGCGUAG&AUACGCCUAGU----CGAUUGGAAU	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s287_TRINITY_DN3149_c0_g1_1587_TPlot.pdf
TRINITY_DN3149_c0_g1:1593	si_s94	TRINITY_DN3149_c0_g1	1580	1603	1593	-35.50	-25.90	0.729577464788732	8	1-9,1603-1595;10-14,1593-1589;15-21,1586-1580	x-x,1594-1594[BULt];x-x,1588-1587[BULt]	(((((((..(((((.(((((((((&)))))))))-)))))--)))))))	CGGUCCGCUGGGCGUAGGAAGGAG&CUUCUUCUU-CGCUU--CGGAUUG	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN3149_c0_g1_1593_TPlot.pdf
TRINITY_DN3149_c0_g1:1613	si_s72	TRINITY_DN3149_c0_g1	1594	1622	1613	-24.10	-16.00	0.663900414937759	23	1-12,1622-1611;13-20,1602-1595	x-x,1610-1603[BULt];21-21,1594-1594[UP3]	.((((((((........((((((((((((&))))))))))))--------)))))))).	UAGGAAGGAGGCUCUGCAGGAGAGUGGAG&UUCUAUUUUUUU--------UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3149_c0_g1_1613_TPlot.pdf
TRINITY_DN3151_c0_g1:824	si_a786	TRINITY_DN3151_c0_g1	813	833	824	-26.60	-18.20	0.684210526315789	3	1-12,833-822;14-17,820-817;19-21,815-813	13-13,821-821[SIL];18-18,816-816[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	GGACGAUGCAAAAAUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3151_c0_g1_824_TPlot.pdf
TRINITY_DN31523_c0_g1:329	si_s624	TRINITY_DN31523_c0_g1	318	338	329	-37.90	-25.66	0.677044854881267	6.5	1-11,338-328;16-20,323-319	12-15,327-324[SIL];21-21,318-318[UP3]	.(((((....(((((((((((&)))))))))))....))))).	UCCUGCUGCUAGAUCGCUUGG&CCAAGCGAUCUUUUCGUAGGC	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN31523_c0_g1_329_TPlot.pdf
TRINITY_DN31523_c0_g1:336	si_s617	TRINITY_DN31523_c0_g1	325	345	336	-28.30	-18.80	0.664310954063604	16	8-18,338-328	1-7,345-339[UP5];19-21,327-325[UP3]	...(((((((((((.......&.......)))))))))))...	GCUAGAUCGCUUGGUGGUAUC&UUUAAAUCCAAGCGAUCUUUU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN31523_c0_g1_336_TPlot.pdf
TRINITY_DN3152_c0_g1:2767	si_a412	TRINITY_DN3152_c0_g1	2756	2776	2767	-18.30	-12.00	0.655737704918033	9.5	2-9,2775-2768;12-18,2765-2759	1-1,2776-2776[UP5];10-11,2767-2766[SIL];19-21,2758-2756[UP3]	...(((((((..((((((((.&.))))))))..)))))))...	UUGUUGUUUAUUUAUAAGCAC&UUGUUUAUAUUUAAAUAAAUA	2	0.999958666064121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN3152_c0_g1_2767_TPlot.pdf
TRINITY_DN3153_c0_g1:1344	si_s121	TRINITY_DN3153_c0_g1	1333	1353	1344	-27.00	-18.60	0.688888888888889	6	1-9,1353-1345;11-17,1343-1337	10-10,1344-1344[SIL];18-21,1336-1333[UP3]	....(((((((.(((((((((&))))))))).)))))))....	UACAAACUCUUGUAUUUUUCU&AGAAAAAUAGAAGAGUUGAAU	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN3153_c0_g1_1344_TPlot.pdf
TRINITY_DN3153_c0_g1:1346	si_s119	TRINITY_DN3153_c0_g1	1335	1355	1346	-27.40	-20.70	0.755474452554745	4	1-11,1355-1345;13-19,1343-1337	12-12,1344-1344[SIL];20-21,1336-1335[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CAAACUCUUGUAUUUUUCUAU&AUAGAAAAAUAGAAGAGUUGA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN3153_c0_g1_1346_TPlot.pdf
TRINITY_DN3153_c0_g1:1347	si_s118	TRINITY_DN3153_c0_g1	1336	1356	1347	-26.40	-21.90	0.829545454545455	2	1-12,1356-1345;14-20,1343-1337	13-13,1344-1344[SIL];21-21,1336-1336[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AAACUCUUGUAUUUUUCUAUU&AAUAGAAAAAUAGAAGAGUUG	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN3153_c0_g1_1347_TPlot.pdf
TRINITY_DN3153_c0_g1:1348	si_s117	TRINITY_DN3153_c0_g1	1337	1357	1348	-24.70	-21.70	0.878542510121457	2	2-13,1356-1345;15-21,1343-1337	1-1,1357-1357[UP5];14-14,1344-1344[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AACUCUUGUAUUUUUCUAUUA&AAAUAGAAAAAUAGAAGAGUU	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN3153_c0_g1_1348_TPlot.pdf
TRINITY_DN3153_c0_g1:1349	si_s116	TRINITY_DN3153_c0_g1	1338	1358	1349	-24.70	-20.80	0.842105263157895	4	3-14,1356-1345;16-21,1343-1338	1-2,1358-1357[UP5];15-15,1344-1344[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	ACUCUUGUAUUUUUCUAUUAU&AAAAUAGAAAAAUAGAAGAGU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN3153_c0_g1_1349_TPlot.pdf
TRINITY_DN3153_c0_g1:1350	si_s115	TRINITY_DN3153_c0_g1	1339	1359	1350	-25.90	-19.50	0.752895752895753	6	4-15,1356-1345;17-21,1343-1339	1-3,1359-1357[UP5];16-16,1344-1344[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	CUCUUGUAUUUUUCUAUUAUU&GAAAAUAGAAAAAUAGAAGAG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s115_TRINITY_DN3153_c0_g1_1350_TPlot.pdf
TRINITY_DN3153_c0_g1:636	si_a321	TRINITY_DN3153_c0_g1	618	645	636	-26.70	-18.40	0.689138576779026	9.5	1-17,645-629;18-21,621-618	x-x,628-622[BULt]	((((.......(((((((((((((((((&)))))))))))))))))-------))))	GGAACGAAACUUAAAAAAGUUAUGGAUG&UAUCCAUGAUUUUUUUA-------UUCC	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3153_c0_g1_636_TPlot.pdf
TRINITY_DN3153_c0_g1:637	si_a320	TRINITY_DN3153_c0_g1	626	646	637	-24.40	-18.90	0.774590163934426	6	1-18,646-629	19-21,628-626[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACUUAAAAAAGUUAUGGAUGA&UUAUCCAUGAUUUUUUUAUUC	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN3153_c0_g1_637_TPlot.pdf
TRINITY_DN3153_c0_g1:639	si_a318	TRINITY_DN3153_c0_g1	628	648	639	-22.50	-19.80	0.88	4.5	2-20,647-629	1-1,648-648[UP5];21-21,628-628[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UUAAAAAAGUUAUGGAUGAAG&AUUUAUCCAUGAUUUUUUUAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3153_c0_g1_639_TPlot.pdf
TRINITY_DN3154_c0_g1:2188	si_s800	TRINITY_DN3154_c0_g1	2176	2197	2188	-29.70	-20.50	0.69023569023569	6	2-3,2196-2195;5-14,2193-2184;15-20,2182-2177	1-1,2197-2197[UP5];4-4,2194-2194[SIL];x-x,2183-2183[BULt];21-21,2176-2176[UP3]	.((((((.((((((((((.((.&.)).))))))))))-)))))).	CGGUAACUGAAGAUAAGAAACU&CGUAUUUUAUCUUC-GUUACCU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN3154_c0_g1_2188_TPlot.pdf
TRINITY_DN3154_c0_g1:2216	si_a453	TRINITY_DN3154_c0_g1	2205	2225	2216	-21.10	-14.30	0.677725118483412	14	4-16,2222-2210	1-3,2225-2223[UP5];17-21,2209-2205[UP3]	.....(((((((((((((...&...))))))))))))).....	GAGAGGUGUAGCAGCGAUGUU&AUAAUUGUUGUUAUAUAUAAU	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN3154_c0_g1_2216_TPlot.pdf
TRINITY_DN3154_c0_g1:2574	si_a568	TRINITY_DN3154_c0_g1	2562	2582	2574	-36.20	-23.80	0.657458563535912	7.5	1-8,2582-2575;11-13,2573-2571;14-17,2569-2566;19-21,2564-2562	9-10,2574-2574[AILq];x-x,2570-2570[BULt];18-18,2565-2565[SIL]	(((.((((.(((.-((((((((&))))))))..)))-)))).)))	GCAUGCGUAACGC-UCACGGGG&CCCCGUGAAUCGU-AUGUUUGU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a568_TRINITY_DN3154_c0_g1_2574_TPlot.pdf
TRINITY_DN3154_c0_g1:2575	si_a566	TRINITY_DN3154_c0_g1	2560	2584	2575	-36.40	-23.76	0.652747252747253	17	2-10,2583-2575;13-19,2568-2562	1-1,2584-2584[UP5];11-12,2574-2569[AILt];20-21,2561-2560[UP3]	..(((((((......(((((((((.&.)))))))))----..)))))))..	UCGCAUGCGUAACGCUCACGGGGGC&CUCCCCGUGA----AUCGUAUGUUU	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN3154_c0_g1_2575_TPlot.pdf
TRINITY_DN3154_c0_g1:2646	si_a535	TRINITY_DN3154_c0_g1	2636	2655	2646	-39.60	-27.10	0.684343434343434	5.5	1-11,2655-2645;13-17,2643-2639;19-20,2638-2637	12-12,2644-2644[SIL];18-18,x-x[BULq];21-21,2636-2636[UP3]	.((-(((((.(((((((((((&))))))))))).))))).)).	CGA-UGAGCAGAUUGCUCGCG&CGCGAGCGAUCGGUUCAAUCU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN3154_c0_g1_2646_TPlot.pdf
TRINITY_DN3154_c0_g1:2647	si_a534	TRINITY_DN3154_c0_g1	2637	2656	2647	-39.70	-28.60	0.720403022670025	3.5	1-12,2656-2645;14-18,2643-2639;20-21,2638-2637	13-13,2644-2644[SIL];19-19,x-x[BULq]	((-(((((.((((((((((((&)))))))))))).))))).))	GA-UGAGCAGAUUGCUCGCGU&ACGCGAGCGAUCGGUUCAAUC	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a534_TRINITY_DN3154_c0_g1_2647_TPlot.pdf
TRINITY_DN3154_c0_g1:2648	si_a533	TRINITY_DN3154_c0_g1	2637	2657	2648	-39.40	-28.10	0.713197969543147	5.5	2-13,2656-2645;15-19,2643-2639	1-1,2657-2657[UP5];14-14,2644-2644[SIL];20-21,2638-2637[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	GAUGAGCAGAUUGCUCGCGUA&CACGCGAGCGAUCGGUUCAAU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN3154_c0_g1_2648_TPlot.pdf
TRINITY_DN3154_c0_g1:2649	si_a532	TRINITY_DN3154_c0_g1	2638	2658	2649	-40.10	-28.10	0.70074812967581	6.5	3-14,2656-2645;16-20,2643-2639	1-2,2658-2657[UP5];15-15,2644-2644[SIL];21-21,2638-2638[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AUGAGCAGAUUGCUCGCGUAA&ACACGCGAGCGAUCGGUUCAA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN3154_c0_g1_2649_TPlot.pdf
TRINITY_DN3154_c0_g1:3551	si_s511	TRINITY_DN3154_c0_g1	3540	3560	3551	-25.50	-17.40	0.68235294117647	12.5	7-21,3554-3540	1-6,3560-3555[UP5]	(((((((((((((((......&......)))))))))))))))	CGAGUUAAGAAUGUAUAAGAU&CAAUUCUAUAUUCUUAAUUCG	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN3154_c0_g1_3551_TPlot.pdf
TRINITY_DN31551_c0_g2:55	si_a852	TRINITY_DN31551_c0_g2	44	64	55	-28.80	-18.80	0.652777777777778	12	1-10,64-55;13-15,52-50	11-12,54-53[SIL];16-21,49-44[UP3]	......(((..((((((((((&))))))))))..)))......	GCAAGCGGACGUCGGGUUAGC&GCUAACUUGAAAUCCAAUUAU	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN31551_c0_g2_55_TPlot.pdf
TRINITY_DN3158_c1_g2:363	si_s818	TRINITY_DN3158_c1_g2	351	372	363	-23.70	-17.70	0.746835443037975	5.5	1-14,372-359;15-17,357-355	x-x,358-358[BULt];18-21,354-351[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	UUCAUCGUUUAUUAAGAAAAGG&CCUUUUCUUAAUAA-UGAAAAA	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN3158_c1_g2_363_TPlot.pdf
TRINITY_DN3158_c1_g2:364	si_s817	TRINITY_DN3158_c1_g2	352	373	364	-24.50	-17.70	0.722448979591837	5.5	2-15,372-359;16-18,357-355	1-1,373-373[UP5];x-x,358-358[BULt];19-21,354-352[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	UCAUCGUUUAUUAAGAAAAGGA&ACCUUUUCUUAAUAA-UGAAAA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN3158_c1_g2_364_TPlot.pdf
TRINITY_DN3158_c1_g2:365	si_s816	TRINITY_DN3158_c1_g2	353	374	365	-24.90	-17.70	0.710843373493976	6.5	3-16,372-359;17-19,357-355	1-2,374-373[UP5];x-x,358-358[BULt];20-21,354-353[UP3]	..(((.((((((((((((((..&..))))))))))))))-)))..	CAUCGUUUAUUAAGAAAAGGAA&UACCUUUUCUUAAUAA-UGAAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN3158_c1_g2_365_TPlot.pdf
TRINITY_DN3158_c1_g2:367	si_s814	TRINITY_DN3158_c1_g2	355	376	367	-26.60	-17.50	0.657894736842105	8.5	5-18,372-359;19-21,357-355	1-4,376-373[UP5];x-x,358-358[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	UCGUUUAUUAAGAAAAGGAAAU&GUUACCUUUUCUUAAUAA-UGA	2	0.976394860109061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN3158_c1_g2_367_TPlot.pdf
TRINITY_DN315_c0_g1:1109	si_s96	TRINITY_DN315_c0_g1	1098	1120	1109	-37.20	-25.10	0.674731182795699	12	1-9,1120-1112;11-20,1108-1099	10-10,1111-1109[AILt];21-21,1098-1098[UP3]	.((((((((((...(((((((((&)))))))))--.)))))))))).	GCCGGUCCGGAUCACGAGGGGGA&UCUUCUUCG--CUUCGGAUUGGA	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN315_c0_g1_1109_TPlot.pdf
TRINITY_DN315_c0_g1:1112	si_s95	TRINITY_DN315_c0_g1	1099	1121	1112	-36.30	-25.80	0.710743801652893	10.5	1-10,1121-1112;12-21,1108-1099	11-11,1111-1109[AILt]	((((((((((...((((((((((&))))))))))--.))))))))))	CCGGUCCGGAUCACGAGGGGGAA&UUCUUCUUCG--CUUCGGAUUGG	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN315_c0_g1_1112_TPlot.pdf
TRINITY_DN315_c0_g1:1113	si_s94	TRINITY_DN315_c0_g1	1100	1122	1113	-35.50	-25.00	0.704225352112676	10.5	1-11,1122-1112;13-21,1108-1100	12-12,1111-1109[AILt]	(((((((((...(((((((((((&)))))))))))--.)))))))))	CGGUCCGGAUCACGAGGGGGAAG&CUUCUUCUUCG--CUUCGGAUUG	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN315_c0_g1_1113_TPlot.pdf
TRINITY_DN315_c0_g1:1114	si_s93	TRINITY_DN315_c0_g1	1101	1123	1114	-34.80	-24.40	0.701149425287356	9.5	1-12,1123-1112;14-21,1108-1101	13-13,1111-1109[AILt]	((((((((...((((((((((((&))))))))))))--.))))))))	GGUCCGGAUCACGAGGGGGAAGA&UCUUCUUCUUCG--CUUCGGAUU	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN315_c0_g1_1114_TPlot.pdf
TRINITY_DN315_c0_g1:1116	si_s91	TRINITY_DN315_c0_g1	1103	1125	1116	-34.70	-22.60	0.651296829971182	9.5	3-14,1123-1112;16-21,1108-1103	1-2,1125-1124[UP5];15-15,1111-1109[AILt]	((((((...((((((((((((..&..))))))))))))--.))))))	UCCGGAUCACGAGGGGGAAGACG&UUUCUUCUUCUUCG--CUUCGGA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN315_c0_g1_1116_TPlot.pdf
TRINITY_DN315_c0_g1:1120	si_s87	TRINITY_DN315_c0_g1	1109	1130	1120	-32.90	-22.80	0.693009118541034	9	2-6,1129-1125;7-18,1123-1112	1-1,1130-1130[UP5];x-x,1124-1124[BULt];19-21,1111-1109[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	UCACGAGGGGGAAGACGAGGAG&UUCCUU-UCUUCUUCUUCGCUU	2	0.999999960667862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN315_c0_g1_1120_TPlot.pdf
TRINITY_DN315_c0_g1:1121	si_s86	TRINITY_DN315_c0_g1	1110	1131	1121	-32.90	-24.50	0.74468085106383	7.5	1-7,1131-1125;8-19,1123-1112	x-x,1124-1124[BULt];20-21,1111-1110[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	CACGAGGGGGAAGACGAGGAGA&UUUCCUU-UCUUCUUCUUCGCU	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN315_c0_g1_1121_TPlot.pdf
TRINITY_DN315_c0_g1:1122	si_s85	TRINITY_DN315_c0_g1	1111	1132	1122	-33.80	-24.70	0.730769230769231	7.5	2-8,1131-1125;9-20,1123-1112	1-1,1132-1132[UP5];x-x,1124-1124[BULt];21-21,1111-1111[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	ACGAGGGGGAAGACGAGGAGAA&CUUUCCUU-UCUUCUUCUUCGC	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN315_c0_g1_1122_TPlot.pdf
TRINITY_DN315_c0_g1:1123	si_s84	TRINITY_DN315_c0_g1	1112	1133	1123	-32.30	-24.70	0.764705882352941	8.5	3-9,1131-1125;10-21,1123-1112	1-2,1133-1132[UP5];x-x,1124-1124[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	CGAGGGGGAAGACGAGGAGAAG&UCUUUCCUU-UCUUCUUCUUCG	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN315_c0_g1_1123_TPlot.pdf
TRINITY_DN315_c0_g1:1124	si_s74	TRINITY_DN315_c0_g1	1113	1133	1124	-25.00	-18.10	0.724	9.5	1-2,1133-1132;4-9,1130-1125;11-21,1123-1113	3-3,1131-1131[SIL];10-10,1124-1124[SIL]	(((((((((((.((((((.((&)).)))))).)))))))))))	GAGGGGGAAGACGAGGAGAAG&CUAUUUUUUUUCUUUCCUUUC	2	0.999999024306661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN315_c0_g1_1124_TPlot.pdf
TRINITY_DN315_c0_g1:1125	si_s83	TRINITY_DN315_c0_g1	1113	1135	1125	-30.90	-23.20	0.750809061488673	8.5	1-4,1135-1132;5-10,1130-1125;11-21,1123-1113	x-x,1131-1131[BULt];x-x,1124-1124[BULt]	(((((((((((.((((((.((((&))))-))))))-)))))))))))	GAGGGGGAAGACGAGGAGAAGGA&UUCU-UUCCUU-UCUUCUUCUUC	4	0.999998511189932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN315_c0_g1_1125_TPlot.pdf
TRINITY_DN315_c0_g1:1126	si_s82	TRINITY_DN315_c0_g1	1114	1136	1126	-28.90	-20.60	0.71280276816609	8.5	1-5,1136-1132;6-11,1130-1125;12-21,1123-1114	x-x,1131-1131[BULt];x-x,1124-1124[BULt]	((((((((((.((((((.(((((&)))))-))))))-))))))))))	AGGGGGAAGACGAGGAGAAGGAA&UUUCU-UUCCUU-UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN315_c0_g1_1126_TPlot.pdf
TRINITY_DN315_c0_g1:1127	si_s72	TRINITY_DN315_c0_g1	1115	1136	1127	-24.10	-16.00	0.663900414937759	10.5	1-4,1136-1133;6-12,1131-1125;13-21,1123-1115	5-5,1132-1132[SIL];x-x,1124-1124[BULt]	(((((((((.(((((((.((((&)))).)))))))-)))))))))	GGGGGAAGACGAGGAGAAGGAA&UUCUAUUUUUUU-UCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN315_c0_g1_1127_TPlot.pdf
TRINITY_DN315_c0_g1:1128	si_s80	TRINITY_DN315_c0_g1	1116	1138	1128	-28.20	-18.80	0.666666666666667	9.5	3-7,1136-1132;8-13,1130-1125;14-21,1123-1116	1-2,1138-1137[UP5];x-x,1131-1131[BULt];x-x,1124-1124[BULt]	((((((((.((((((.(((((..&..)))))-))))))-))))))))	GGGGAAGACGAGGAGAAGGAACG&UUUUUCU-UUCCUU-UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN315_c0_g1_1128_TPlot.pdf
TRINITY_DN315_c0_g1:1129	si_a497	TRINITY_DN315_c0_g1	1116	1139	1129	-32.00	-21.10	0.659375	11	1-4,1139-1136;5-5,1134-1134;7-10,1132-1129;11-21,1126-1116	x-x,1135-1135[BULt];6-6,1133-1133[SIL];x-x,1128-1127[BULt]	(((((((((((..((((.(.((((&))))-).))))--)))))))))))	GGGGAAGACGAGGAGAAGGAACGU&AUGU-CGUUUU--UCGUCUUCCUU	2	0.999999999987482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN315_c0_g1_1129_TPlot.pdf
TRINITY_DN315_c0_g1:1130	si_a496	TRINITY_DN315_c0_g1	1117	1140	1130	-32.40	-21.90	0.675925925925926	10.5	1-5,1140-1136;6-6,1134-1134;8-11,1132-1129;12-21,1126-1117	x-x,1135-1135[BULt];7-7,1133-1133[SIL];x-x,1128-1127[BULt]	((((((((((..((((.(.(((((&)))))-).))))--))))))))))	GGGAAGACGAGGAGAAGGAACGUA&UAUGU-CGUUUU--UCGUCUUCCU	3	0.999999993062352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN315_c0_g1_1130_TPlot.pdf
TRINITY_DN315_c0_g1:1144	si_s77	TRINITY_DN315_c0_g1	1127	1153	1144	-25.50	-17.90	0.701960784313725	10	1-13,1153-1141;14-21,1134-1127	x-x,1140-1135[BULt]	((((((((......(((((((((((((&)))))))))))))------))))))))	GGAGAAGGAACGUAGAAAGGAGGAAAA&UUUUUUUUCUUUC------CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN315_c0_g1_1144_TPlot.pdf
TRINITY_DN315_c0_g1:1155	si_s82	TRINITY_DN315_c0_g1	1144	1164	1155	-28.90	-23.50	0.813148788927336	4	1-12,1164-1153;14-21,1151-1144	13-13,1152-1152[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGGAGGAAAAGAGGAAAGAGA&UUUCUUUCCUUUCUUCUUCUU	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN315_c0_g1_1155_TPlot.pdf
TRINITY_DN315_c0_g1:1156	si_s81	TRINITY_DN315_c0_g1	1145	1165	1156	-28.90	-22.90	0.792387543252595	5	2-13,1164-1153;15-21,1151-1145	1-1,1165-1165[UP5];14-14,1152-1152[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GGAGGAAAAGAGGAAAGAGAG&UUUUCUUUCCUUUCUUCUUCU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN315_c0_g1_1156_TPlot.pdf
TRINITY_DN315_c0_g1:1162	si_s75	TRINITY_DN315_c0_g1	1151	1171	1162	-24.00	-18.40	0.766666666666667	8.5	3-19,1169-1153	1-2,1171-1170[UP5];20-21,1152-1151[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAGAGGAAAGAGAGAAAGGA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999954412122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN315_c0_g1_1162_TPlot.pdf
TRINITY_DN315_c0_g1:1995	si_a398	TRINITY_DN315_c0_g1	1983	2004	1995	-22.40	-15.70	0.700892857142857	10.5	4-17,2001-1988;18-20,1986-1984	1-3,2004-2002[UP5];x-x,1987-1987[BULt];21-21,1983-1983[UP3]	.(((.((((((((((((((...&...))))))))))))))-))).	AGAACCAGAGCGAUUCUGUCGC&AAUAUAGAAUUGUUUUG-UUUA	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN315_c0_g1_1995_TPlot.pdf
TRINITY_DN315_c0_g1:3897	si_a475	TRINITY_DN315_c0_g1	3885	3906	3897	-23.50	-17.20	0.731914893617021	3	1-16,3906-3891;19-21,3887-3885	17-18,3890-3888[AILt]	(((...((((((((((((((((&))))))))))))))))-..)))	UUCAGUUAUAACAAUAAUUACA&UGUAAUUAUUGUUAUA-UAGAA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN315_c0_g1_3897_TPlot.pdf
TRINITY_DN315_c0_g1:3898	si_a474	TRINITY_DN315_c0_g1	3887	3907	3898	-23.60	-18.30	0.775423728813559	4	1-17,3907-3891	18-21,3890-3887[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAGUUAUAACAAUAAUUACAU&AUGUAAUUAUUGUUAUAUAGA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN315_c0_g1_3898_TPlot.pdf
TRINITY_DN315_c0_g1:3900	si_a472	TRINITY_DN315_c0_g1	3889	3909	3900	-21.50	-18.80	0.874418604651163	4	2-19,3908-3891	1-1,3909-3909[UP5];20-21,3890-3889[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GUUAUAACAAUAAUUACAUGA&AUAUGUAAUUAUUGUUAUAUA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN315_c0_g1_3900_TPlot.pdf
TRINITY_DN315_c0_g1:3901	si_a471	TRINITY_DN315_c0_g1	3890	3910	3901	-21.10	-18.80	0.890995260663507	5	3-20,3908-3891	1-2,3910-3909[UP5];21-21,3890-3890[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UUAUAACAAUAAUUACAUGAU&AAUAUGUAAUUAUUGUUAUAU	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN315_c0_g1_3901_TPlot.pdf
TRINITY_DN315_c0_g1:3903	si_a469	TRINITY_DN315_c0_g1	3892	3913	3903	-21.10	-18.60	0.881516587677725	3	1-5,3913-3909;6-21,3907-3892	x-x,3908-3908[BULt]	((((((((((((((((.(((((&)))))-))))))))))))))))	AUAACAAUAAUUACAUGAUUGU&AUAAU-AUGUAAUUAUUGUUAU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN315_c0_g1_3903_TPlot.pdf
TRINITY_DN315_c0_g1:3904	si_a468	TRINITY_DN315_c0_g1	3893	3914	3904	-21.30	-18.70	0.877934272300469	3	1-6,3914-3909;7-21,3907-3893	x-x,3908-3908[BULt]	(((((((((((((((.((((((&))))))-)))))))))))))))	UAACAAUAAUUACAUGAUUGUA&UAUAAU-AUGUAAUUAUUGUUA	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN315_c0_g1_3904_TPlot.pdf
TRINITY_DN315_c0_g1:3906	si_a466	TRINITY_DN315_c0_g1	3895	3916	3906	-21.50	-17.60	0.818604651162791	4	2-8,3915-3909;9-21,3907-3895	1-1,3916-3916[UP5];x-x,3908-3908[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	ACAAUAAUUACAUGAUUGUAUU&UAUAUAAU-AUGUAAUUAUUGU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN315_c0_g1_3906_TPlot.pdf
TRINITY_DN315_c0_g1:3907	si_a465	TRINITY_DN315_c0_g1	3896	3917	3907	-20.90	-16.30	0.779904306220096	6	3-9,3915-3909;10-21,3907-3896	1-2,3917-3916[UP5];x-x,3908-3908[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	CAAUAAUUACAUGAUUGUAUUA&AUAUAUAAU-AUGUAAUUAUUG	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN315_c0_g1_3907_TPlot.pdf
TRINITY_DN3161_c0_g1:1663	si_a142	TRINITY_DN3161_c0_g1	1652	1672	1663	-23.50	-15.90	0.676595744680851	16.5	7-19,1666-1654	1-6,1672-1667[UP5];20-21,1653-1652[UP3]	..(((((((((((((......&......)))))))))))))..	UGGGAGCGGCAGCGACGAUCU&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999988442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3161_c0_g1_1663_TPlot.pdf
TRINITY_DN3161_c0_g1:1740	si_a144	TRINITY_DN3161_c0_g1	1729	1749	1740	-27.40	-18.60	0.678832116788321	11	4-17,1746-1733;20-21,1730-1729	1-3,1749-1747[UP5];18-19,1732-1731[SIL]	((..((((((((((((((...&...))))))))))))))..))	CCGCAAGGCAGCGAUGAUGAA&UUAAUCGUUGUUGUUUUAAGG	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN3161_c0_g1_1740_TPlot.pdf
TRINITY_DN3161_c0_g1:340	si_s37	TRINITY_DN3161_c0_g1	329	349	340	-24.40	-16.70	0.684426229508197	7	1-4,349-346;6-18,344-332	5-5,345-345[SIL];19-21,331-329[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CCACAAUUAUUAGAGAAUUGG&CUAAAUCUUUAAUAAUUGGAU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN3161_c0_g1_340_TPlot.pdf
TRINITY_DN31628_c0_g1:191	si_a836	TRINITY_DN31628_c0_g1	179	200	191	-24.10	-16.50	0.684647302904564	12.5	7-17,194-184;18-21,182-179	1-6,200-195[UP5];x-x,183-183[BULt]	((((.(((((((((((......&......)))))))))))-))))	UUAGCCAGCUUCUAUUGACUAG&AAAAAAAAUAGAAGUUG-CUAA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN31628_c0_g1_191_TPlot.pdf
TRINITY_DN3162_c0_g1:4302	si_a495	TRINITY_DN3162_c0_g1	4291	4311	4302	-31.90	-23.00	0.721003134796238	9	1-17,4311-4295	18-21,4294-4291[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUCUGGCGGGGAGCGACAUGU&AUAUGUCGUUUUUCGUCUUCC	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN3162_c0_g1_4302_TPlot.pdf
TRINITY_DN3163_c0_g1:581	si_s435	TRINITY_DN3163_c0_g1	571	590	581	-20.90	-15.10	0.722488038277512	4	1-12,590-579;14-19,578-573	13-13,x-x[BULq];20-21,572-571[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	AGAUAUAA-AUGUGAUUAUUG&CAAUAAUUACAUAUUAUAUAU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN3163_c0_g1_581_TPlot.pdf
TRINITY_DN3163_c0_g1:582	si_s434	TRINITY_DN3163_c0_g1	572	591	582	-21.50	-16.90	0.786046511627907	3	1-13,591-579;15-20,578-573	14-14,x-x[BULq];21-21,572-572[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	GAUAUAA-AUGUGAUUAUUGU&ACAAUAAUUACAUAUUAUAUA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN3163_c0_g1_582_TPlot.pdf
TRINITY_DN3163_c0_g1:583	si_s433	TRINITY_DN3163_c0_g1	573	592	583	-21.10	-16.70	0.791469194312796	3	2-14,591-579;16-21,578-573	1-1,592-592[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	AUAUAA-AUGUGAUUAUUGUA&AACAAUAAUUACAUAUUAUAU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN3163_c0_g1_583_TPlot.pdf
TRINITY_DN3163_c0_g1:584	si_s432	TRINITY_DN3163_c0_g1	574	593	584	-21.30	-15.50	0.727699530516432	5	3-15,591-579;17-21,578-574	1-2,593-592[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	UAUAA-AUGUGAUUAUUGUAG&UAACAAUAAUUACAUAUUAUA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN3163_c0_g1_584_TPlot.pdf
TRINITY_DN3163_c0_g1:586	si_s430	TRINITY_DN3163_c0_g1	575	595	586	-21.30	-14.20	0.666666666666667	11.5	5-17,591-579	1-4,595-592[UP5];18-21,578-575[UP3]	....(((((((((((((....&....)))))))))))))....	AUAAAUGUGAUUAUUGUAGAU&UAUAACAAUAAUUACAUAUUA	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN3163_c0_g1_586_TPlot.pdf
TRINITY_DN3163_c0_g1:587	si_s429	TRINITY_DN3163_c0_g1	576	596	587	-21.10	-14.20	0.672985781990521	12.5	6-18,591-579	1-5,596-592[UP5];19-21,578-576[UP3]	...(((((((((((((.....&.....)))))))))))))...	UAAAUGUGAUUAUUGUAGAUU&AUAUAACAAUAAUUACAUAUU	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN3163_c0_g1_587_TPlot.pdf
TRINITY_DN3164_c0_g1:423	si_a372	TRINITY_DN3164_c0_g1	412	435	423	-29.40	-21.02	0.714965986394558	12	2-7,434-429;10-20,423-413	1-1,435-435[UP5];8-9,428-424[AILt];21-21,412-412[UP3]	.(((((((((((.....((((((.&.))))))---..))))))))))).	GUCGAAAUCAUUGACAAUGAUCCU&CGGAUCA---AAAAUGAUUUCGAA	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN3164_c0_g1_423_TPlot.pdf
TRINITY_DN3165_c0_g1:1249	si_s71	TRINITY_DN3165_c0_g1	1232	1258	1249	-25.70	-17.40	0.67704280155642	11	2-16,1257-1243;17-21,1236-1232	1-1,1258-1258[UP5];x-x,1242-1237[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	GGGAAACUGUUGGAAAAGAAAUGGGAU&CUUCUAUUUUUUUUCU------UUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3165_c0_g1_1249_TPlot.pdf
TRINITY_DN3165_c0_g1:1253	si_s67	TRINITY_DN3165_c0_g1	1242	1271	1253	-25.60	-17.30	0.67578125	22	1-5,1271-1267;6-20,1257-1243	x-x,1266-1258[BULt];21-21,1242-1242[UP3]	.(((((((((((((((.........(((((&)))))---------))))))))))))))).	UGGAAAAGAAAUGGGAUUCAUGUAUGUUGC&GCAAC---------UUCUAUUUUUUUUCUU	4	0.999999999404123	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3165_c0_g1_1253_TPlot.pdf
TRINITY_DN3165_c0_g1:1256	si_s64	TRINITY_DN3165_c0_g1	1245	1274	1256	-24.10	-16.10	0.66804979253112	21	1-8,1274-1267;9-21,1257-1245	x-x,1266-1258[BULt]	(((((((((((((.........((((((((&))))))))---------)))))))))))))	AAAAGAAAUGGGAUUCAUGUAUGUUGCUAG&UUAGCAAC---------UUCUAUUUUUUUU	4	0.999999999949954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3165_c0_g1_1256_TPlot.pdf
TRINITY_DN3166_c0_g1:3119	si_s35	TRINITY_DN3166_c0_g1	3108	3128	3119	-24.00	-16.90	0.704166666666667	5.5	2-3,3127-3126;5-21,3124-3108	1-1,3128-3128[UP5];4-4,3125-3125[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	CUGAUUGUUAGAGAUUUUGUA&AACUAAAUCUUUAAUAAUUGG	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN3166_c0_g1_3119_TPlot.pdf
TRINITY_DN3166_c0_g1:978	si_a193	TRINITY_DN3166_c0_g1	956	987	978	-30.90	-20.10	0.650485436893204	13.5	1-8,987-980;10-13,978-975;14-21,963-956	9-9,979-979[SIL];x-x,974-964[BULt]	((((((((...........((((.((((((((&)))))))).))))-----------))))))))	UUUGUUAGAACACAUAGUAUGAAGAGGGAAAG&CUUUCCCUGUUCA-----------CUAAUAAA	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN3166_c0_g1_978_TPlot.pdf
TRINITY_DN3167_c0_g2:228	si_a320	TRINITY_DN3167_c0_g2	217	240	228	-24.40	-16.10	0.659836065573771	12	2-8,239-233;9-20,229-218	1-1,240-240[UP5];x-x,232-230[BULt];21-21,217-217[UP3]	.((((((((((((...(((((((.&.)))))))---)))))))))))).	CAAUGAGAAAGUCUAGGUGGAUGU&UUAUCCAU---GAUUUUUUUAUUC	4	0.999999994346383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN3167_c0_g2_228_TPlot.pdf
TRINITY_DN3167_c0_g2:237	si_a300	TRINITY_DN3167_c0_g2	226	246	237	-28.20	-19.00	0.673758865248227	8	3-7,244-240;9-21,238-226	1-2,246-245[UP5];8-8,239-239[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AGUCUAGGUGGAUGUUUUUGU&UAAAAAAGAUUCGCUUGGAUU	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN3167_c0_g2_237_TPlot.pdf
TRINITY_DN3168_c0_g2:129	si_a411	TRINITY_DN3168_c0_g2	118	138	129	-17.90	-11.90	0.664804469273743	8.5	3-17,136-122	1-2,138-137[UP5];18-21,121-118[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGAGAUUUGAAUAUAAAUAUU&UUUGUUUAUAUUUAAAUAAAU	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3168_c0_g2_129_TPlot.pdf
TRINITY_DN3168_c0_g2:130	si_a410	TRINITY_DN3168_c0_g2	119	139	130	-17.80	-11.90	0.668539325842697	9.5	4-18,136-122	1-3,139-137[UP5];19-21,121-119[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAGAUUUGAAUAUAAAUAUUC&UUUUGUUUAUAUUUAAAUAAA	2	0.999999984726266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3168_c0_g2_130_TPlot.pdf
TRINITY_DN3168_c0_g2:164	si_a638	TRINITY_DN3168_c0_g2	151	173	164	-24.40	-16.70	0.684426229508197	7	1-2,173-172;4-15,170-159;16-20,156-152	3-3,171-171[SIL];x-x,158-157[BULt];21-21,151-151[UP3]	.(((((..((((((((((((.((&)).))))))))))))--))))).	CGUAUUUAGCUCAAAAAGAUGGA&UCGAUUUUUUUGAGU--AAUAUA	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN3168_c0_g2_164_TPlot.pdf
TRINITY_DN3168_c0_g2:167	si_a635	TRINITY_DN3168_c0_g2	156	176	167	-26.10	-17.30	0.662835249042146	10.5	3-5,174-172;7-18,170-159	1-2,176-175[UP5];6-6,171-171[SIL];19-21,158-156[UP3]	...((((((((((((.(((..&..))).))))))))))))...	UUAGCUCAAAAAGAUGGAUCU&AUGUCGAUUUUUUUGAGUAAU	4	0.999999999985793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN3168_c0_g2_167_TPlot.pdf
TRINITY_DN3168_c0_g2:168	si_a634	TRINITY_DN3168_c0_g2	157	177	168	-26.40	-17.30	0.65530303030303	11.5	4-6,174-172;8-19,170-159	1-3,177-175[UP5];7-7,171-171[SIL];20-21,158-157[UP3]	..((((((((((((.(((...&...))).))))))))))))..	UAGCUCAAAAAGAUGGAUCUG&UAUGUCGAUUUUUUUGAGUAA	3	0.999999999941609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN3168_c0_g2_168_TPlot.pdf
TRINITY_DN3168_c0_g2:169	si_a633	TRINITY_DN3168_c0_g2	158	178	169	-26.40	-17.30	0.65530303030303	12.5	5-7,174-172;9-20,170-159	1-4,178-175[UP5];8-8,171-171[SIL];21-21,158-158[UP3]	.((((((((((((.(((....&....))).)))))))))))).	AGCUCAAAAAGAUGGAUCUGU&UUAUGUCGAUUUUUUUGAGUA	3	0.99999999999475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3168_c0_g2_169_TPlot.pdf
TRINITY_DN3168_c0_g2:267	si_a409	TRINITY_DN3168_c0_g2	256	276	267	-19.50	-13.80	0.707692307692308	9	1-14,276-263	15-21,262-256[UP3]	.......((((((((((((((&)))))))))))))).......	AGGGAGCAAUAUGGACAAAAC&GUUUUGUUUAUAUUUAAAUAA	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3168_c0_g2_267_TPlot.pdf
TRINITY_DN3168_c0_g2:269	si_a407	TRINITY_DN3168_c0_g2	258	278	269	-19.80	-15.50	0.782828282828283	7	1-16,278-263	17-21,262-258[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGAGCAAUAUGGACAAAACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3168_c0_g2_269_TPlot.pdf
TRINITY_DN3168_c0_g2:270	si_a406	TRINITY_DN3168_c0_g2	259	279	270	-19.80	-15.50	0.782828282828283	7	2-17,278-263	1-1,279-279[UP5];18-21,262-259[UP3]	....((((((((((((((((.&.))))))))))))))))....	GAGCAAUAUGGACAAAACAAC&AUUGUUUUGUUUAUAUUUAAA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3168_c0_g2_270_TPlot.pdf
TRINITY_DN3168_c0_g2:271	si_a405	TRINITY_DN3168_c0_g2	260	280	271	-19.80	-15.50	0.782828282828283	7.5	3-18,278-263	1-2,280-279[UP5];19-21,262-260[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGCAAUAUGGACAAAACAACC&AAUUGUUUUGUUUAUAUUUAA	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3168_c0_g2_271_TPlot.pdf
TRINITY_DN3168_c0_g2:272	si_a404	TRINITY_DN3168_c0_g2	261	281	272	-21.70	-15.50	0.714285714285714	8	4-19,278-263	1-3,281-279[UP5];20-21,262-261[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCAAUAUGGACAAAACAACCA&GAAUUGUUUUGUUUAUAUUUA	2	0.999071824285151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3168_c0_g2_272_TPlot.pdf
TRINITY_DN3168_c0_g2:273	si_a403	TRINITY_DN3168_c0_g2	262	282	273	-22.00	-15.50	0.704545454545455	9	5-20,278-263	1-4,282-279[UP5];21-21,262-262[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAUAUGGACAAAACAACCAA&AGAAUUGUUUUGUUUAUAUUU	2	0.999657069035875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3168_c0_g2_273_TPlot.pdf
TRINITY_DN3168_c0_g2:274	si_a402	TRINITY_DN3168_c0_g2	263	283	274	-22.40	-15.50	0.691964285714286	10	6-21,278-263	1-5,283-279[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUAUGGACAAAACAACCAAU&UAGAAUUGUUUUGUUUAUAUU	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN3168_c0_g2_274_TPlot.pdf
TRINITY_DN3168_c0_g2:690	si_a24	TRINITY_DN3168_c0_g2	679	699	690	-24.20	-16.20	0.669421487603306	10	4-10,696-690;12-21,688-679	1-3,699-697[UP5];11-11,689-689[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GUCUUAGGGCAGAAAAUGUGG&AUUUAUUUUUAGUUCUAAGAC	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN3168_c0_g2_690_TPlot.pdf
TRINITY_DN31694_c0_g1:208	si_a148	TRINITY_DN31694_c0_g1	197	217	208	-30.30	-19.90	0.656765676567657	8.5	3-11,215-207;13-19,205-199	1-2,217-216[UP5];12-12,206-206[SIL];20-21,198-197[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	CGGAUCUUACAGCAACAACUG&UCGUUGUUGUUUUAAGGUCAA	2	0.999927632264917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN31694_c0_g1_208_TPlot.pdf
TRINITY_DN31694_c0_g1:209	si_a147	TRINITY_DN31694_c0_g1	198	218	209	-30.40	-19.90	0.654605263157895	8.5	4-12,215-207;14-20,205-199	1-3,218-216[UP5];13-13,206-206[SIL];21-21,198-198[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	GGAUCUUACAGCAACAACUGA&AUCGUUGUUGUUUUAAGGUCA	3	0.999999958800647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN31694_c0_g1_209_TPlot.pdf
TRINITY_DN31694_c0_g1:210	si_a146	TRINITY_DN31694_c0_g1	199	219	210	-29.70	-19.50	0.656565656565657	9.5	5-13,215-207;15-21,205-199	1-4,219-216[UP5];14-14,206-206[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GAUCUUACAGCAACAACUGAA&AAUCGUUGUUGUUUUAAGGUC	2	0.999940699237118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN31694_c0_g1_210_TPlot.pdf
TRINITY_DN31699_c0_g2:59	si_a7	TRINITY_DN31699_c0_g2	47	68	59	-29.10	-19.20	0.65979381443299	9	3-11,66-58;12-21,56-47	1-2,68-67[UP5];x-x,57-57[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	AAGUGGGCUUAUUUCUUUAGGU&AAUUGAAGAGA-AAGCCUAUUU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN31699_c0_g2_59_TPlot.pdf
TRINITY_DN3169_c0_g1:3109	si_a72	TRINITY_DN3169_c0_g1	3098	3118	3109	-21.90	-15.20	0.694063926940639	9.5	4-17,3115-3102;19-21,3100-3098	1-3,3118-3116[UP5];18-18,3101-3101[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GUGCUGAGAAGCGAUUUGUAU&UUUCAAAUUGUUUUUCAUUAU	2	0.999939956558842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN3169_c0_g1_3109_TPlot.pdf
TRINITY_DN316_c0_g1:1233	si_a282	TRINITY_DN316_c0_g1	1222	1242	1233	-30.30	-19.90	0.656765676567657	14	7-19,1236-1224	1-6,1242-1237[UP5];20-21,1223-1222[UP3]	..(((((((((((((......&......)))))))))))))..	UGAAAUCCAGGCGAUGGAGAA&GAAAAGAUCGCUUGGAUUUAA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN316_c0_g1_1233_TPlot.pdf
TRINITY_DN316_c0_g1:1644	si_a311	TRINITY_DN316_c0_g1	1628	1653	1644	-32.70	-23.00	0.703363914373089	16	2-12,1652-1642;13-18,1636-1631	1-1,1653-1653[UP5];x-x,1641-1637[BULt];19-21,1630-1628[UP3]	...((((((.....(((((((((((.&.)))))))))))-----))))))...	AGCCAUGGAAAAUUUGGAUCCAAGCA&CGCUUGGAUUUA-----UCCAUGAUU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN316_c0_g1_1644_TPlot.pdf
TRINITY_DN316_c0_g1:1647	si_a308	TRINITY_DN316_c0_g1	1631	1656	1647	-32.70	-22.20	0.678899082568807	13	5-15,1652-1642;16-21,1636-1631	1-4,1656-1653[UP5];x-x,1641-1637[BULt]	((((((.....(((((((((((....&....)))))))))))-----))))))	CAUGGAAAAUUUGGAUCCAAGCAAUG&AUUCGCUUGGAUUUA-----UCCAUG	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN316_c0_g1_1647_TPlot.pdf
TRINITY_DN316_c0_g1:1651	si_a304	TRINITY_DN316_c0_g1	1640	1666	1651	-30.40	-20.30	0.667763157894737	16	2-8,1665-1659;9-19,1652-1642	1-1,1666-1666[UP5];x-x,1658-1653[BULt];20-21,1641-1640[UP3]	..(((((((((((......(((((((.&.)))))))------)))))))))))..	UUUGGAUCCAAGCAAUGGAGAAUCUUG&AAAGAUUC------GCUUGGAUUUAUC	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN316_c0_g1_1651_TPlot.pdf
TRINITY_DN316_c0_g1:1659	si_a302	TRINITY_DN316_c0_g1	1642	1668	1659	-28.20	-20.20	0.716312056737589	18	4-10,1665-1659;11-21,1652-1642	1-3,1668-1666[UP5];x-x,1658-1653[BULt]	(((((((((((......(((((((...&...)))))))------)))))))))))	UGGAUCCAAGCAAUGGAGAAUCUUGCU&AAAAAGAUUC------GCUUGGAUUUA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN316_c0_g1_1659_TPlot.pdf
TRINITY_DN316_c0_g1:1660	si_a301	TRINITY_DN316_c0_g1	1643	1669	1660	-27.80	-19.00	0.683453237410072	20	5-11,1665-1659;12-21,1652-1643	1-4,1669-1666[UP5];x-x,1658-1653[BULt]	((((((((((......(((((((....&....)))))))------))))))))))	GGAUCCAAGCAAUGGAGAAUCUUGCUC&AAAAAAGAUUC------GCUUGGAUUU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN316_c0_g1_1660_TPlot.pdf
TRINITY_DN316_c0_g1:1661	si_a300	TRINITY_DN316_c0_g1	1644	1670	1661	-28.20	-18.70	0.663120567375887	21.5	6-12,1665-1659;13-21,1652-1644	1-5,1670-1666[UP5];x-x,1658-1653[BULt]	(((((((((......(((((((.....&.....)))))))------)))))))))	GAUCCAAGCAAUGGAGAAUCUUGCUCA&UAAAAAAGAUUC------GCUUGGAUU	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN316_c0_g1_1661_TPlot.pdf
TRINITY_DN316_c0_g1:2083	si_s809	TRINITY_DN316_c0_g1	2072	2093	2083	-28.50	-18.80	0.659649122807018	8.5	1-9,2093-2085;10-11,2083-2082;13-18,2080-2075	x-x,2084-2084[BULt];12-12,2081-2081[SIL];19-21,2074-2072[UP3]	...((((((.((.(((((((((&)))))))))-)).))))))...	CUCAAGGAAUGGAUGACGAAGA&UCUUCGUUA-CCUUUUCUUAAU	3	0.999999999773328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN316_c0_g1_2083_TPlot.pdf
TRINITY_DN316_c0_g1:2085	si_s808	TRINITY_DN316_c0_g1	2073	2094	2085	-28.60	-18.80	0.657342657342657	7.5	2-10,2093-2085;11-12,2083-2082;14-19,2080-2075	1-1,2094-2094[UP5];x-x,2084-2084[BULt];13-13,2081-2081[SIL];20-21,2074-2073[UP3]	..((((((.((.(((((((((.&.)))))))))-)).))))))..	UCAAGGAAUGGAUGACGAAGAA&AUCUUCGUUA-CCUUUUCUUAA	3	0.999999999997362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN316_c0_g1_2085_TPlot.pdf
TRINITY_DN316_c0_g1:2109	si_a150	TRINITY_DN316_c0_g1	2098	2118	2109	-29.90	-19.90	0.665551839464883	9	1-6,2118-2113;9-21,2110-2098	7-8,2112-2111[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAUUGGCUUUGAAUGGAUGAC&GUUGUUGUUUUAAGGUCAAUC	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN316_c0_g1_2109_TPlot.pdf
TRINITY_DN316_c0_g1:2170	si_a35	TRINITY_DN316_c0_g1	2159	2179	2170	-37.80	-24.70	0.653439153439153	10	1-4,2179-2176;7-17,2173-2163;19-19,2161-2161	5-6,2175-2174[SIL];18-18,2162-2162[SIL];20-21,2160-2159[UP3]	..(.(((((((((((..((((&))))..))))))))))).)..	GUGUCCUACUGGUCUCUGGGC&GUUCUAAGACCGGUAGGUCUA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN316_c0_g1_2170_TPlot.pdf
TRINITY_DN316_c0_g1:2174	si_a31	TRINITY_DN316_c0_g1	2163	2183	2174	-35.10	-23.60	0.672364672364672	13.5	5-8,2179-2176;11-21,2173-2163	1-4,2183-2180[UP5];9-10,2175-2174[SIL]	(((((((((((..((((....&....))))..)))))))))))	CCUACUGGUCUCUGGGCCGUG&UUUAGUUCUAAGACCGGUAGG	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a31_TRINITY_DN316_c0_g1_2174_TPlot.pdf
TRINITY_DN316_c0_g1:3306	si_s691	TRINITY_DN316_c0_g1	3295	3316	3306	-26.20	-18.20	0.694656488549618	9	1-8,3316-3309;9-15,3307-3301	x-x,3308-3308[BULt];16-21,3300-3295[UP3]	......(((((((.((((((((&))))))))-)))))))......	AAAGACCGACUAAUUUGAACUC&GAGUUUAA-UUAGUCGAUUUAU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN316_c0_g1_3306_TPlot.pdf
TRINITY_DN316_c0_g1:3307	si_s690	TRINITY_DN316_c0_g1	3296	3317	3307	-26.70	-18.30	0.685393258426966	9	2-9,3316-3309;10-16,3307-3301	1-1,3317-3317[UP5];x-x,3308-3308[BULt];17-21,3300-3296[UP3]	.....(((((((.((((((((.&.))))))))-))))))).....	AAGACCGACUAAUUUGAACUCG&UGAGUUUAA-UUAGUCGAUUUA	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN316_c0_g1_3307_TPlot.pdf
TRINITY_DN316_c0_g1:3309	si_s689	TRINITY_DN316_c0_g1	3297	3318	3309	-26.50	-19.60	0.739622641509434	8	1-10,3318-3309;11-17,3307-3301	x-x,3308-3308[BULt];18-21,3300-3297[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AGACCGACUAAUUUGAACUCGU&AUGAGUUUAA-UUAGUCGAUUU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN316_c0_g1_3309_TPlot.pdf
TRINITY_DN316_c0_g1:3310	si_s688	TRINITY_DN316_c0_g1	3298	3319	3310	-28.20	-19.70	0.698581560283688	8	2-11,3318-3309;12-18,3307-3301	1-1,3319-3319[UP5];x-x,3308-3308[BULt];19-21,3300-3298[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	GACCGACUAAUUUGAACUCGUU&CAUGAGUUUAA-UUAGUCGAUU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN316_c0_g1_3310_TPlot.pdf
TRINITY_DN316_c0_g1:3313	si_s685	TRINITY_DN316_c0_g1	3301	3322	3313	-27.80	-18.90	0.679856115107914	10	5-14,3318-3309;15-21,3307-3301	1-4,3322-3319[UP5];x-x,3308-3308[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	CGACUAAUUUGAACUCGUUGCU&AAACAUGAGUUUAA-UUAGUCG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s685_TRINITY_DN316_c0_g1_3313_TPlot.pdf
TRINITY_DN316_c0_g1:4187	si_a425	TRINITY_DN316_c0_g1	4185	4196	4187	-30.80	-20.50	0.665584415584416	2	11-21,4195-4185	10-10,4196-4196[SIL]	(((((((((((.&.)))))))))))	CCGACGGAUCCC&AAUAAAUAUAGG	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN316_c0_g1_4187_TPlot.pdf
TRINITY_DN316_c0_g1:4190	si_a431	TRINITY_DN316_c0_g1	4179	4199	4190	-34.50	-22.70	0.657971014492754	12.5	5-16,4195-4184	1-4,4199-4196[UP5];17-21,4183-4179[UP3]	.....((((((((((((....&....)))))))))))).....	AGCCCUCCGACGGAUCCCCUU&UAUAGGAUCCGUUGGAUAUGA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN316_c0_g1_4190_TPlot.pdf
TRINITY_DN316_c0_g1:4191	si_a430	TRINITY_DN316_c0_g1	4180	4200	4191	-33.70	-22.70	0.673590504451039	13.5	6-17,4195-4184	1-5,4200-4196[UP5];18-21,4183-4180[UP3]	....((((((((((((.....&.....))))))))))))....	GCCCUCCGACGGAUCCCCUUG&AUAUAGGAUCCGUUGGAUAUG	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN316_c0_g1_4191_TPlot.pdf
TRINITY_DN316_c0_g1:4192	si_a429	TRINITY_DN316_c0_g1	4181	4201	4192	-32.00	-22.70	0.709375	14.5	7-18,4195-4184	1-6,4201-4196[UP5];19-21,4183-4181[UP3]	...((((((((((((......&......))))))))))))...	CCCUCCGACGGAUCCCCUUGG&AAUAUAGGAUCCGUUGGAUAU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN316_c0_g1_4192_TPlot.pdf
TRINITY_DN316_c0_g1:4193	si_a428	TRINITY_DN316_c0_g1	4182	4202	4193	-31.80	-22.70	0.713836477987421	15.5	8-19,4195-4184	1-7,4202-4196[UP5];20-21,4183-4182[UP3]	..((((((((((((.......&.......))))))))))))..	CCUCCGACGGAUCCCCUUGGG&AAAUAUAGGAUCCGUUGGAUA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN316_c0_g1_4193_TPlot.pdf
TRINITY_DN316_c0_g1:4195	si_a426	TRINITY_DN316_c0_g1	4184	4204	4195	-31.80	-22.60	0.710691823899371	17.5	10-21,4195-4184	1-9,4204-4196[UP5]	((((((((((((.........&.........))))))))))))	UCCGACGGAUCCCCUUGGGUC&AUAAAUAUAGGAUCCGUUGGA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN316_c0_g1_4195_TPlot.pdf
TRINITY_DN316_c0_g1:4235	si_s204	TRINITY_DN316_c0_g1	4222	4245	4235	-36.30	-24.40	0.672176308539945	10	1-3,4245-4243;5-7,4241-4239;9-18,4236-4227;19-21,4224-4222	4-4,4242-4242[SIL];8-8,4238-4237[AILt];x-x,4226-4225[BULt]	(((..((((((((((..(((.(((&))).)))-.))))))))))--)))	CGAAGGCACAGCUGGCGACGGUCC&GGAAUGU-ACCAGUUGUGU--UCG	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s204_TRINITY_DN316_c0_g1_4235_TPlot.pdf
TRINITY_DN316_c0_g1:4236	si_s203	TRINITY_DN316_c0_g1	4225	4246	4236	-35.50	-23.10	0.650704225352113	10.5	2-4,4245-4243;6-8,4241-4239;10-20,4236-4226	1-1,4246-4246[UP5];5-5,4242-4242[SIL];9-9,4238-4237[AILt];21-21,4225-4225[UP3]	.(((((((((((..(((.(((.&.))).)))-.))))))))))).	AGGCACAGCUGGCGACGGUCCG&UGGAAUGU-ACCAGUUGUGUUC	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN316_c0_g1_4236_TPlot.pdf
TRINITY_DN316_c0_g1:4239	si_s201	TRINITY_DN316_c0_g1	4227	4248	4239	-33.60	-23.10	0.6875	11	2-6,4247-4243;8-10,4241-4239;12-21,4236-4227	1-1,4248-4248[UP5];7-7,4242-4242[SIL];11-11,4238-4237[AILt]	((((((((((..(((.(((((.&.))))).)))-.))))))))))	GCACAGCUGGCGACGGUCCGGU&UUUGGAAUGU-ACCAGUUGUGU	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN316_c0_g1_4239_TPlot.pdf
TRINITY_DN316_c0_g1:4240	si_s200	TRINITY_DN316_c0_g1	4228	4249	4240	-32.80	-21.50	0.655487804878049	12.5	3-7,4247-4243;9-11,4241-4239;13-21,4236-4228	1-2,4249-4248[UP5];8-8,4242-4242[SIL];12-12,4238-4237[AILt]	(((((((((..(((.(((((..&..))))).)))-.)))))))))	CACAGCUGGCGACGGUCCGGUU&UUUUGGAAUGU-ACCAGUUGUG	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN316_c0_g1_4240_TPlot.pdf
TRINITY_DN316_c0_g1:428	si_a502	TRINITY_DN316_c0_g1	414	437	428	-32.10	-21.70	0.67601246105919	11	1-11,437-427;12-14,423-421;16-21,419-414	x-x,426-424[BULt];15-15,420-420[SIL]	((((((.(((...(((((((((((&)))))))))))---))).))))))	GUUUCAUGGAACCAGACGAAGGGC&GUUUUUCGUCU---UCCUUGGAAU	3	0.999999997767088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN316_c0_g1_428_TPlot.pdf
TRINITY_DN316_c0_g1:429	si_a501	TRINITY_DN316_c0_g1	415	438	429	-33.50	-22.80	0.680597014925373	10.5	1-12,438-427;13-15,423-421;17-21,419-415	x-x,426-424[BULt];16-16,420-420[SIL]	(((((.(((...((((((((((((&))))))))))))---))).)))))	UUUCAUGGAACCAGACGAAGGGCG&CGUUUUUCGUCU---UCCUUGGAA	2	0.999925808258036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN316_c0_g1_429_TPlot.pdf
TRINITY_DN316_c0_g1:431	si_a499	TRINITY_DN316_c0_g1	417	440	431	-35.20	-24.60	0.698863636363636	8.5	1-14,440-427;15-17,423-421;19-21,419-417	x-x,426-424[BULt];18-18,420-420[SIL]	(((.(((...((((((((((((((&))))))))))))))---))).)))	UCAUGGAACCAGACGAAGGGCGGC&GUCGUUUUUCGUCU---UCCUUGG	2	0.998853114148591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN316_c0_g1_431_TPlot.pdf
TRINITY_DN316_c0_g1:432	si_a498	TRINITY_DN316_c0_g1	418	441	432	-33.50	-24.50	0.73134328358209	8	1-15,441-427;16-18,423-421;20-21,419-418	x-x,426-424[BULt];19-19,420-420[SIL]	((.(((...(((((((((((((((&)))))))))))))))---))).))	CAUGGAACCAGACGAAGGGCGGCA&UGUCGUUUUUCGUCU---UCCUUG	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN316_c0_g1_432_TPlot.pdf
TRINITY_DN316_c0_g1:433	si_a497	TRINITY_DN316_c0_g1	419	442	433	-32.00	-23.90	0.746875	10	2-16,441-427;17-19,423-421	1-1,442-442[UP5];x-x,426-424[BULt];20-21,420-419[UP3]	..(((...(((((((((((((((.&.)))))))))))))))---)))..	AUGGAACCAGACGAAGGGCGGCAA&AUGUCGUUUUUCGUCU---UCCUU	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN316_c0_g1_433_TPlot.pdf
TRINITY_DN316_c0_g1:434	si_a496	TRINITY_DN316_c0_g1	420	443	434	-32.40	-23.90	0.737654320987654	11	3-17,441-427;18-20,423-421	1-2,443-442[UP5];x-x,426-424[BULt];21-21,420-420[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	UGGAACCAGACGAAGGGCGGCAAC&UAUGUCGUUUUUCGUCU---UCCU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN316_c0_g1_434_TPlot.pdf
TRINITY_DN316_c0_g1:435	si_a495	TRINITY_DN316_c0_g1	421	444	435	-31.90	-23.50	0.736677115987461	12	4-18,441-427;19-21,423-421	1-3,444-442[UP5];x-x,426-424[BULt]	(((...(((((((((((((((...&...)))))))))))))))---)))	GGAACCAGACGAAGGGCGGCAACG&AUAUGUCGUUUUUCGUCU---UCC	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN316_c0_g1_435_TPlot.pdf
TRINITY_DN316_c0_g1:436	si_a494	TRINITY_DN316_c0_g1	425	445	436	-29.50	-21.30	0.722033898305085	13	5-19,441-427	1-4,445-442[UP5];20-21,426-425[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAGACGAAGGGCGGCAACGA&AAUAUGUCGUUUUUCGUCUUC	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN316_c0_g1_436_TPlot.pdf
TRINITY_DN316_c0_g1:437	si_a493	TRINITY_DN316_c0_g1	426	446	437	-29.50	-21.30	0.722033898305085	13.5	6-20,441-427	1-5,446-442[UP5];21-21,426-426[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGACGAAGGGCGGCAACGAC&GAAUAUGUCGUUUUUCGUCUU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN316_c0_g1_437_TPlot.pdf
TRINITY_DN316_c0_g1:438	si_a492	TRINITY_DN316_c0_g1	427	447	438	-30.20	-21.30	0.705298013245033	14	7-21,441-427	1-6,447-442[UP5]	(((((((((((((((......&......)))))))))))))))	AGACGAAGGGCGGCAACGACU&AGAAUAUGUCGUUUUUCGUCU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN316_c0_g1_438_TPlot.pdf
TRINITY_DN316_c0_g1:439	si_a491	TRINITY_DN316_c0_g1	428	448	439	-29.90	-20.16	0.674247491638796	10.5	1-3,448-446;8-21,441-428	4-7,445-442[SIL]	((((((((((((((....(((&)))....))))))))))))))	GACGAAGGGCGGCAACGACUA&UAGAAUAUGUCGUUUUUCGUC	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN316_c0_g1_439_TPlot.pdf
TRINITY_DN316_c0_g1:4590	si_s610	TRINITY_DN316_c0_g1	4579	4599	4590	-27.20	-18.08	0.664705882352941	12	3-8,4597-4592;12-20,4588-4580	1-2,4599-4598[UP5];9-11,4591-4589[SIL];21-21,4579-4579[UP3]	.(((((((((...((((((..&..))))))...))))))))).	UGCUUGGAUUCGUGAAGGAGC&AAUCUUUUUUAAAUCCAAGCG	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN316_c0_g1_4590_TPlot.pdf
TRINITY_DN316_c0_g1:4701	si_s75	TRINITY_DN316_c0_g1	4689	4711	4701	-24.00	-16.30	0.679166666666667	9	1-6,4711-4706;7-15,4704-4696;16-20,4694-4690	x-x,4705-4705[BULt];x-x,4695-4695[BULt];21-21,4689-4689[UP3]	.(((((.(((((((((.((((((&))))))-)))))))))-))))).	CGAAAGAGAGAGGAAGCAGAGUG&UAUUUU-UUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN316_c0_g1_4701_TPlot.pdf
TRINITY_DN316_c0_g1:4784	si_a758	TRINITY_DN316_c0_g1	4773	4796	4784	-34.00	-22.30	0.655882352941176	16	1-6,4796-4791;10-19,4784-4775	7-9,4790-4785[AILt];20-21,4774-4773[UP3]	..((((((((((......((((((&))))))---...))))))))))..	ACGUCAAAGACCAACCUUGGGAGG&CCUCCU---UUGGGUUUUUGAUUG	3	0.999999973068369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN316_c0_g1_4784_TPlot.pdf
TRINITY_DN316_c0_g1:4785	si_a757	TRINITY_DN316_c0_g1	4774	4797	4785	-33.10	-22.30	0.673716012084592	16	2-7,4796-4791;11-20,4784-4775	1-1,4797-4797[UP5];8-10,4790-4785[AILt];21-21,4774-4774[UP3]	.((((((((((......((((((.&.))))))---...)))))))))).	CGUCAAAGACCAACCUUGGGAGGA&ACCUCCU---UUGGGUUUUUGAUU	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN316_c0_g1_4785_TPlot.pdf
TRINITY_DN316_c0_g1:689	si_s555	TRINITY_DN316_c0_g1	678	698	689	-26.90	-17.80	0.661710037174721	6.5	1-12,698-687;14-20,685-679	13-13,686-686[SIL];21-21,678-678[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CUCCGAGGUUAUUGAUUUUGU&AUAGAAUUAAUAUUUUCGGGA	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN316_c0_g1_689_TPlot.pdf
TRINITY_DN316_c0_g1:690	si_s554	TRINITY_DN316_c0_g1	679	699	690	-25.90	-18.70	0.722007722007722	5.5	1-13,699-687;15-21,685-679	14-14,686-686[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	UCCGAGGUUAUUGAUUUUGUU&AAUAGAAUUAAUAUUUUCGGG	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN316_c0_g1_690_TPlot.pdf
TRINITY_DN316_c0_g1:691	si_s553	TRINITY_DN316_c0_g1	680	700	691	-23.50	-17.70	0.753191489361702	6	2-14,699-687;16-21,685-680	1-1,700-700[UP5];15-15,686-686[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	CCGAGGUUAUUGAUUUUGUUA&AAAUAGAAUUAAUAUUUUCGG	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN316_c0_g1_691_TPlot.pdf
TRINITY_DN316_c0_g1:692	si_s552	TRINITY_DN316_c0_g1	681	701	692	-21.10	-14.60	0.691943127962085	8	3-15,699-687;17-21,685-681	1-2,701-700[UP5];16-16,686-686[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	CGAGGUUAUUGAUUUUGUUAA&AAAAUAGAAUUAAUAUUUUCG	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN316_c0_g1_692_TPlot.pdf
TRINITY_DN31710_c0_g1:429	si_a494	TRINITY_DN31710_c0_g1	418	437	429	-29.50	-19.80	0.671186440677966	8.5	4-8,434-430;10-21,429-418	1-3,437-435[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	GAAGAUGAAGAA-GACAUUAA&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999894778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN31710_c0_g1_429_TPlot.pdf
TRINITY_DN3171_c0_g1:1795	si_a757	TRINITY_DN3171_c0_g1	1783	1810	1795	-33.10	-23.20	0.700906344410876	17	2-7,1809-1804;8-12,1797-1793;13-21,1791-1783	1-1,1810-1810[UP5];x-x,1803-1798[BULt];x-x,1792-1792[BULt]	(((((((((.(((((......((((((.&.))))))------)))))-)))))))))	AAUCAGAGAGCCCAAGCGAAUGGGAGGA&ACCUCCU------UUGGG-UUUUUGAUU	2	0.988813635845706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN3171_c0_g1_1795_TPlot.pdf
TRINITY_DN3171_c0_g1:1813	si_a497	TRINITY_DN3171_c0_g1	1803	1822	1813	-32.00	-21.10	0.659375	8	1-11,1822-1812;14-20,1810-1804	12-13,1811-1811[AILq];21-21,1803-1803[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	UGGGAGGAA-GAAAGCGACGU&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3171_c0_g1_1813_TPlot.pdf
TRINITY_DN3171_c0_g1:512	si_a790	TRINITY_DN3171_c0_g1	501	521	512	-25.80	-17.60	0.682170542635659	10.5	5-20,517-502	1-4,521-518[UP5];21-21,501-501[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUUGGAAGGUAGGAAAUGAA&CUAUUUUUCUAUUUUCCAAUC	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN3171_c0_g1_512_TPlot.pdf
TRINITY_DN3171_c0_g1:516	si_s78	TRINITY_DN3171_c0_g1	505	526	516	-26.20	-17.40	0.66412213740458	7	3-8,524-519;9-14,517-512;16-21,510-505	1-2,526-525[UP5];x-x,518-518[BULt];15-15,511-511[SIL]	((((((.((((((.((((((..&..))))))-)))))).))))))	GGAAGGUAGGAAAUGAAAAACU&UUUUUUUC-UUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3171_c0_g1_516_TPlot.pdf
TRINITY_DN31720_c0_g1:211	si_s69	TRINITY_DN31720_c0_g1	200	221	211	-23.40	-17.40	0.743589743589744	10	3-7,219-215;9-21,212-200	1-2,221-220[UP5];8-8,214-213[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGAGGAAAAAAGAGGAGAGGGA&AACUUCU-AUUUUUUUUCUUUC	4	0.999999995400848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN31720_c0_g1_211_TPlot.pdf
TRINITY_DN31720_c0_g1:48	si_s75	TRINITY_DN31720_c0_g1	33	57	48	-24.00	-19.20	0.8	7	1-17,57-41;18-21,36-33	x-x,40-37[BULt]	((((....(((((((((((((((((&)))))))))))))))))----))))	AGAAGUUUGGGAAAGAAGGAAAAUG&UAUUUUUUUUCUUUCCU----UUCU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN31720_c0_g1_48_TPlot.pdf
TRINITY_DN31723_c0_g1:291	si_s86	TRINITY_DN31723_c0_g1	281	301	291	-32.90	-21.60	0.656534954407295	6	1-5,301-297;6-17,295-284;19-20,283-282	x-x,296-296[BULt];18-18,x-x[BULq];21-21,281-281[UP3]	.((-((((((((((((.(((((&)))))-)))))))))))).)).	UGC-AGGAAGAAGAAACGGGAG&UUUCC-UUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN31723_c0_g1_291_TPlot.pdf
TRINITY_DN31723_c0_g1:294	si_s68	TRINITY_DN31723_c0_g1	283	304	294	-23.10	-17.50	0.757575757575758	9	1-8,304-297;10-20,294-284	9-9,296-295[AILt];21-21,283-283[UP3]	.(((((((((((..((((((((&))))))))-.))))))))))).	CAGGAAGAAGAAACGGGAGUUG&CAACUUCU-AUUUUUUUUCUUU	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN31723_c0_g1_294_TPlot.pdf
TRINITY_DN31723_c0_g1:299	si_a778	TRINITY_DN31723_c0_g1	289	308	299	-28.30	-19.00	0.671378091872792	6.5	1-12,308-297;16-21,294-289	13-15,296-295[AILq]	((((((..-((((((((((((&))))))))))))...))))))	GAAGAAAC-GGGAGUUGGAUC&GAUUCAACUCUUCUAUUUUUC	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN31723_c0_g1_299_TPlot.pdf
TRINITY_DN31723_c2_g1:88	si_s814	TRINITY_DN31723_c2_g1	77	97	88	-26.60	-17.90	0.672932330827068	8	1-13,97-85	14-21,84-77[UP3]	........(((((((((((((&)))))))))))))........	GUACGGGAAAGAAAAGGUAAC&GUUACCUUUUCUUAAUAAUGA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN31723_c2_g1_88_TPlot.pdf
TRINITY_DN31723_c2_g1:91	si_s811	TRINITY_DN31723_c2_g1	80	100	91	-26.40	-21.50	0.814393939393939	6	2-16,99-85	1-1,100-100[UP5];17-21,84-80[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CGGGAAAGAAAAGGUAACGAC&UUCGUUACCUUUUCUUAAUAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN31723_c2_g1_91_TPlot.pdf
TRINITY_DN31723_c2_g1:99	si_s803	TRINITY_DN31723_c2_g1	88	108	99	-26.00	-17.10	0.657692307692308	9	4-7,105-102;10-21,99-88	1-3,108-106[UP5];8-9,101-100[SIL]	((((((((((((..((((...&...))))..))))))))))))	AAAAGGUAACGACAAUAAUAU&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN31723_c2_g1_99_TPlot.pdf
TRINITY_DN3173_c0_g1:3558	si_s45	TRINITY_DN3173_c0_g1	3547	3567	3558	-24.70	-18.20	0.736842105263158	8	3-18,3565-3550	1-2,3567-3566[UP5];19-21,3549-3547[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCAUUGAAAUCCGAUUGUUCC&UUAAUAAUUGGAUUUCAAGUU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN3173_c0_g1_3558_TPlot.pdf
TRINITY_DN3174_c1_g1:2567	si_a413	TRINITY_DN3174_c1_g1	2556	2576	2567	-18.40	-14.90	0.809782608695652	5	1-16,2576-2561	17-21,2560-2556[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGAACUAUUUAAAUAUAAACA&UGUUUAUAUUUAAAUAAAUAU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN3174_c1_g1_2567_TPlot.pdf
TRINITY_DN3174_c1_g1:787	si_a349	TRINITY_DN3174_c1_g1	776	796	787	-21.30	-14.10	0.661971830985915	7	1-3,796-794;5-17,792-780	4-4,793-793[SIL];18-21,779-776[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UACCGUAGGAUUAAUAUCUUC&GAAAAUAUUAAUUCUAUUUUG	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN3174_c1_g1_787_TPlot.pdf
TRINITY_DN3175_c0_g1:10933	si_a363	TRINITY_DN3175_c0_g1	10922	10942	10933	-26.40	-19.20	0.727272727272727	11.5	3-15,10940-10928	1-2,10942-10941[UP5];16-21,10927-10922[UP3]	......(((((((((((((..&..)))))))))))))......	CGAUCCGGUCCGAUCGAGAAA&UAUUUUGAUCGGAUCAAAAAU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN3175_c0_g1_10933_TPlot.pdf
TRINITY_DN3175_c0_g1:10938	si_a358	TRINITY_DN3175_c0_g1	10927	10947	10938	-29.10	-19.20	0.65979381443299	16.5	8-20,10940-10928	1-7,10947-10941[UP5];21-21,10927-10927[UP3]	.(((((((((((((.......&.......))))))))))))).	CGGUCCGAUCGAGAAACAUUU&AAUUCUAUUUUGAUCGGAUCA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN3175_c0_g1_10938_TPlot.pdf
TRINITY_DN3175_c0_g1:1666	si_s362	TRINITY_DN3175_c0_g1	1655	1675	1666	-34.70	-24.50	0.706051873198847	7.5	3-10,1673-1666;12-20,1664-1656	1-2,1675-1674[UP5];11-11,1665-1665[SIL];21-21,1655-1655[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CAGUGAUCGGGUCAAUCUGGG&AAUAGAUUGAACCGAUCGCUC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN3175_c0_g1_1666_TPlot.pdf
TRINITY_DN3175_c0_g1:1855	si_s149	TRINITY_DN3175_c0_g1	1844	1862	1855	-37.20	-25.40	0.682795698924731	10.5	4-7,1859-1856;10-21,1855-1844	1-3,1862-1860[UP5];8-9,x-x[BULq]	((((((((((((--((((...&...))))..))))))))))))	CCAUGAGCCUUC--UGGGCCU&AAACCCAAAGGAGGUUCAUGG	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s149_TRINITY_DN3175_c0_g1_1855_TPlot.pdf
TRINITY_DN3175_c0_g1:2833	si_a323	TRINITY_DN3175_c0_g1	2821	2843	2833	-26.80	-19.70	0.735074626865672	7	1-5,2843-2839;6-14,2837-2829;15-20,2827-2822	x-x,2838-2838[BULt];x-x,2828-2828[BULt];21-21,2821-2821[UP3]	.((((((.(((((((((.(((((&)))))-)))))))))-)))))).	CGGGAAUGGAAAGAGUCGAUGGA&UCCAU-GAUUUUUUU-AUUCCUU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3175_c0_g1_2833_TPlot.pdf
TRINITY_DN3175_c0_g1:449	si_a703	TRINITY_DN3175_c0_g1	438	458	449	-29.20	-20.30	0.695205479452055	14	3-14,456-445	1-2,458-457[UP5];15-21,444-438[UP3]	.......((((((((((((..&..)))))))))))).......	CGGAGACGGGGUGUGCCGGGG&AACUGGUACAUUCCAAAAUAA	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN3175_c0_g1_449_TPlot.pdf
TRINITY_DN3175_c0_g1:450	si_a702	TRINITY_DN3175_c0_g1	439	459	450	-30.80	-20.30	0.659090909090909	14.5	4-15,456-445	1-3,459-457[UP5];16-21,444-439[UP3]	......((((((((((((...&...))))))))))))......	GGAGACGGGGUGUGCCGGGGC&CAACUGGUACAUUCCAAAAUA	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN3175_c0_g1_450_TPlot.pdf
TRINITY_DN3175_c0_g1:4859	si_a398	TRINITY_DN3175_c0_g1	4848	4868	4859	-22.40	-15.20	0.678571428571429	7.5	2-18,4867-4851	1-1,4868-4868[UP5];19-21,4850-4848[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GACAUAGGACAGUUUUAUAUA&AAUAUAGAAUUGUUUUGUUUA	3	0.999999602285272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3175_c0_g1_4859_TPlot.pdf
TRINITY_DN3175_c0_g1:594	si_a481	TRINITY_DN3175_c0_g1	578	603	594	-25.60	-17.80	0.6953125	12.5	3-16,601-588;17-21,582-578	1-2,603-602[UP5];x-x,587-583[BULt]	(((((.....((((((((((((((..&..))))))))))))))-----)))))	GGCGUUCAGCGUUCUGUAUGACGAGG&UAUUGUUAUAUAGAAU-----AUGUC	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN3175_c0_g1_594_TPlot.pdf
TRINITY_DN3175_c0_g1:595	si_a480	TRINITY_DN3175_c0_g1	579	604	595	-23.70	-15.50	0.654008438818565	14.5	4-17,601-588;18-21,582-579	1-3,604-602[UP5];x-x,587-583[BULt]	((((.....((((((((((((((...&...))))))))))))))-----))))	GCGUUCAGCGUUCUGUAUGACGAGGC&UUAUUGUUAUAUAGAAU-----AUGU	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN3175_c0_g1_595_TPlot.pdf
TRINITY_DN3175_c0_g1:7022	si_s638	TRINITY_DN3175_c0_g1	7011	7040	7022	-40.30	-26.66	0.661538461538462	26	2-9,7039-7032;12-21,7020-7011	1-1,7040-7040[UP5];10-11,7031-7021[AILt]	((((((((((...........((((((((.&.))))))))---------..))))))))))	UAUUGGGGGCUAUAGAUGGCUGCGCCUGCA&CGUAGGCGU---------UUGCCCUCGAUA	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN3175_c0_g1_7022_TPlot.pdf
TRINITY_DN3175_c0_g1:7453	si_s86	TRINITY_DN3175_c0_g1	7441	7462	7453	-32.90	-22.60	0.68693009118541	6.5	1-6,7462-7457;8-11,7455-7452;12-16,7450-7446;18-21,7444-7441	7-7,7456-7456[SIL];x-x,7451-7451[BULt];17-17,7445-7445[SIL]	((((.(((((.((((.((((((&)))))).))))-))))).))))	AGCGCGGAAGUAAGAUGGGAAA&UUUCCUUUCUU-CUUCUUCGCU	4	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3175_c0_g1_7453_TPlot.pdf
TRINITY_DN3175_c0_g1:8103	si_s314	TRINITY_DN3175_c0_g1	8092	8112	8103	-31.50	-23.20	0.736507936507936	10.5	4-18,8109-8095;20-20,8093-8093	1-3,8112-8110[UP5];19-19,8094-8094[SIL];21-21,8092-8092[UP3]	.(.(((((((((((((((...&...))))))))))))))).).	AGCGGCAGGAGGGACGGAUUC&AAUUCUGUCCUUCUUGUUACA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN3175_c0_g1_8103_TPlot.pdf
TRINITY_DN31760_c0_g1:2034	si_a642	TRINITY_DN31760_c0_g1	2023	2043	2034	-25.90	-17.10	0.66023166023166	9	4-10,2040-2034;12-20,2032-2024	1-3,2043-2041[UP5];11-11,2033-2033[SIL];21-21,2023-2023[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	UCGAUAUAUUUCUCGAAAUGA&UUUUUUUGAGUAAUAUAUCGG	4	0.999631482924068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN31760_c0_g1_2034_TPlot.pdf
TRINITY_DN31760_c0_g1:472	si_a553	TRINITY_DN31760_c0_g1	458	482	472	-33.70	-22.70	0.673590504451039	9.5	1-3,482-480;5-16,477-466;17-21,462-458	4-4,479-478[AILt];x-x,465-463[BULt]	(((((...((((((((((((..(((&)))-.))))))))))))---)))))	ACGGGAUAGGGAUAGAGAAAGAGGA&UCU-AUUUCUUUAUCUC---CCCGU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN31760_c0_g1_472_TPlot.pdf
TRINITY_DN3177_c0_g1:1289	si_a636	TRINITY_DN3177_c0_g1	1278	1299	1289	-26.30	-17.50	0.665399239543726	7	1-5,1299-1295;6-16,1293-1283;19-20,1280-1279	x-x,1294-1294[BULt];17-18,1282-1281[SIL];21-21,1278-1278[UP3]	.((..(((((((((((.(((((&)))))-)))))))))))..)).	AAUCUCUCAAAAAGGUACGACA&UGUCG-AUUUUUUUGAGUAAUA	4	0.99999999618061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN3177_c0_g1_1289_TPlot.pdf
TRINITY_DN3177_c0_g1:1292	si_a633	TRINITY_DN3177_c0_g1	1281	1302	1292	-26.40	-17.30	0.65530303030303	11	4-8,1299-1295;9-19,1293-1283	1-3,1302-1300[UP5];x-x,1294-1294[BULt];20-21,1282-1281[UP3]	..(((((((((((.(((((...&...)))))-)))))))))))..	CUCUCAAAAAGGUACGACAAGA&UUAUGUCG-AUUUUUUUGAGUA	4	0.999999999983584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3177_c0_g1_1292_TPlot.pdf
TRINITY_DN3177_c0_g1:1293	si_a632	TRINITY_DN3177_c0_g1	1282	1303	1293	-26.10	-17.30	0.662835249042146	12	5-9,1299-1295;10-20,1293-1283	1-4,1303-1300[UP5];x-x,1294-1294[BULt];21-21,1282-1282[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	UCUCAAAAAGGUACGACAAGAA&AUUAUGUCG-AUUUUUUUGAGU	2	0.999994215439769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN3177_c0_g1_1293_TPlot.pdf
TRINITY_DN3178_c0_g1:3305	si_a318	TRINITY_DN3178_c0_g1	3294	3314	3305	-22.50	-15.50	0.688888888888889	9	4-14,3311-3301;16-19,3299-3296	1-3,3314-3312[UP5];15-15,3300-3300[SIL];20-21,3295-3294[UP3]	..((((.(((((((((((...&...))))))))))).))))..	UCGAAACAGUCAUGGAUAUUU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999991331938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3178_c0_g1_3305_TPlot.pdf
TRINITY_DN3179_c0_g1:1109	si_s73	TRINITY_DN3179_c0_g1	1098	1118	1109	-24.00	-17.70	0.7375	7.5	1-17,1118-1102	18-21,1101-1098[UP3]	....(((((((((((((((((&)))))))))))))))))....	GAACGGAAGAAAAAGGGUAGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999999999940967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3179_c0_g1_1109_TPlot.pdf
TRINITY_DN3179_c0_g1:1114	si_s68	TRINITY_DN3179_c0_g1	1103	1126	1114	-23.10	-16.30	0.705627705627706	10.5	2-5,1125-1122;6-21,1118-1103	1-1,1126-1126[UP5];x-x,1121-1119[BULt]	((((((((((((((((...((((.&.))))---))))))))))))))))	GAAGAAAAAGGGUAGAUGAAGUUU&CAACU---UCUAUUUUUUUUCUUU	2	0.999998809311826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3179_c0_g1_1114_TPlot.pdf
TRINITY_DN3179_c0_g1:1196	si_s756	TRINITY_DN3179_c0_g1	1185	1205	1196	-27.40	-18.90	0.68978102189781	9.5	1-4,1205-1202;7-10,1199-1196;12-19,1194-1187	5-6,1201-1200[SIL];11-11,1195-1195[SIL];20-21,1186-1185[UP3]	..((((((((.((((..((((&))))..)))).))))))))..	GAGAUCGUUGAUGUUGCGAGG&CCUUAAAACAACAACGAUUAA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s756_TRINITY_DN3179_c0_g1_1196_TPlot.pdf
TRINITY_DN317_c0_g1:1191	si_a67	TRINITY_DN317_c0_g1	1182	1200	1191	-27.20	-19.60	0.720588235294118	5.5	1-11,1200-1190;14-20,1189-1183	12-13,x-x[BULq];21-21,1182-1182[UP3]	.(((((((--(((((((((((&)))))))))))..))))))).	UGAGAGCA--UUGAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN317_c0_g1_1191_TPlot.pdf
TRINITY_DN317_c0_g1:1193	si_a65	TRINITY_DN317_c0_g1	1184	1202	1193	-27.70	-18.90	0.682310469314079	6	3-13,1200-1190;16-21,1189-1184	1-2,1202-1201[UP5];14-15,x-x[BULq]	((((((--(((((((((((..&..)))))))))))..))))))	AGAGCA--UUGAAAGAAGCUG&UCGCUUCUUUCAAAUUGUUUU	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN317_c0_g1_1193_TPlot.pdf
TRINITY_DN317_c0_g1:1434	si_s804	TRINITY_DN317_c0_g1	1420	1443	1434	-27.90	-19.30	0.691756272401434	12.5	1-11,1443-1433;15-21,1426-1420	12-14,1432-1427[AILt]	(((((((......(((((((((((&)))))))))))---...)))))))	GAAGAGGAUUGUUCGGAGAUAGAA&UUUUAUCUUCG---UUACCUUUUC	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN317_c0_g1_1434_TPlot.pdf
TRINITY_DN317_c0_g1:1439	si_a791	TRINITY_DN317_c0_g1	1425	1448	1439	-26.50	-19.10	0.720754716981132	8.5	3-15,1446-1434;16-21,1430-1425	1-2,1448-1447[UP5];x-x,1433-1431[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	GGAUUGUUCGGAGAUAGAAGAAAU&UAUUUUUCUAUUUUC---CAAUCC	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN317_c0_g1_1439_TPlot.pdf
TRINITY_DN317_c0_g1:2639	si_s90	TRINITY_DN317_c0_g1	2628	2648	2639	-35.30	-23.50	0.6657223796034	5	2-13,2647-2636;16-20,2633-2629	1-1,2648-2648[UP5];14-15,2635-2634[SIL];21-21,2628-2628[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	ACGAAGGAAAGAGGAAGAAAA&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN317_c0_g1_2639_TPlot.pdf
TRINITY_DN317_c0_g1:2640	si_s74	TRINITY_DN317_c0_g1	2629	2649	2640	-25.00	-19.70	0.788	6.5	1-2,2649-2648;4-20,2646-2630	3-3,2647-2647[SIL];21-21,2629-2629[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	CGAAGGAAAGAGGAAGAAAAG&CUAUUUUUUUUCUUUCCUUUC	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN317_c0_g1_2640_TPlot.pdf
TRINITY_DN317_c0_g1:2642	si_s72	TRINITY_DN317_c0_g1	2631	2651	2642	-24.10	-20.30	0.842323651452282	6	2-4,2650-2648;6-21,2646-2631	1-1,2651-2651[UP5];5-5,2647-2647[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AAGGAAAGAGGAAGAAAAGAG&UUCUAUUUUUUUUCUUUCCUU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN317_c0_g1_2642_TPlot.pdf
TRINITY_DN317_c0_g1:2643	si_s71	TRINITY_DN317_c0_g1	2632	2652	2643	-25.70	-20.00	0.778210116731518	6.5	2-5,2651-2648;7-21,2646-2632	1-1,2652-2652[UP5];6-6,2647-2647[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AGGAAAGAGGAAGAAAAGAGA&CUUCUAUUUUUUUUCUUUCCU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN317_c0_g1_2643_TPlot.pdf
TRINITY_DN317_c0_g1:2935	si_s68	TRINITY_DN317_c0_g1	2924	2944	2935	-23.10	-15.40	0.666666666666667	9	1-14,2944-2931	15-21,2930-2924[UP3]	.......((((((((((((((&)))))))))))))).......	CUGCUAUAAAAGUGGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN317_c0_g1_2935_TPlot.pdf
TRINITY_DN317_c0_g1:2941	si_s62	TRINITY_DN317_c0_g1	2930	2950	2941	-26.50	-17.30	0.652830188679245	7	2-5,2949-2946;7-20,2944-2931	1-1,2950-2950[UP5];6-6,2945-2945[SIL];21-21,2930-2930[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UAAAAGUGGAAGUUGAUGAUA&AGUUAGCAACUUCUAUUUUUU	3	0.999996599817936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN317_c0_g1_2941_TPlot.pdf
TRINITY_DN317_c0_g1:2942	si_s61	TRINITY_DN317_c0_g1	2931	2951	2942	-26.50	-17.30	0.652830188679245	8	3-6,2949-2946;8-21,2944-2931	1-2,2951-2950[UP5];7-7,2945-2945[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AAAAGUGGAAGUUGAUGAUAA&AAGUUAGCAACUUCUAUUUUU	3	0.999995393414573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN317_c0_g1_2942_TPlot.pdf
TRINITY_DN317_c0_g1:3555	si_s305	TRINITY_DN317_c0_g1	3544	3564	3555	-30.30	-20.30	0.66996699669967	11	4-9,3561-3556;11-19,3554-3546	1-3,3564-3562[UP5];10-10,3555-3555[SIL];20-21,3545-3544[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	CUGGACAGAAUAUUUGCGCCG&AAUUGCGAAAAUUCUGUCCUU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN317_c0_g1_3555_TPlot.pdf
TRINITY_DN317_c0_g1:4496	si_a151	TRINITY_DN317_c0_g1	4486	4504	4496	-28.90	-19.70	0.681660899653979	4.5	1-9,4504-4496;11-14,4495-4492;16-21,4491-4486	10-10,x-x[BULq];15-15,x-x[BULq]	((((((-((((-(((((((((&))))))))).)))).))))))	AGGUUG-CCUU-AAACAACGA&UUGUUGUUUUAAGGUCAAUCU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN317_c0_g1_4496_TPlot.pdf
TRINITY_DN317_c0_g1:4753	si_a99	TRINITY_DN317_c0_g1	4744	4762	4753	-28.20	-18.98	0.673049645390071	8	3-14,4760-4749;19-21,4746-4744	1-2,4762-4761[UP5];15-18,4748-4747[AILq]	(((..--((((((((((((..&..))))))))))))....)))	GUAGC--AUCUUCGUUGCCAA&AAGGUAACGAAGAUAAAAUAC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a99_TRINITY_DN317_c0_g1_4753_TPlot.pdf
TRINITY_DN317_c0_g1:4754	si_a98	TRINITY_DN317_c0_g1	4743	4763	4754	-26.40	-18.90	0.715909090909091	12	4-15,4760-4749	1-3,4763-4761[UP5];16-21,4748-4743[UP3]	......((((((((((((...&...))))))))))))......	UGUAGCAUCUUCGUUGCCAAU&AAAGGUAACGAAGAUAAAAUA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN317_c0_g1_4754_TPlot.pdf
TRINITY_DN317_c0_g1:4755	si_a97	TRINITY_DN317_c0_g1	4744	4764	4755	-26.00	-18.90	0.726923076923077	13	5-16,4760-4749	1-4,4764-4761[UP5];17-21,4748-4744[UP3]	.....((((((((((((....&....)))))))))))).....	GUAGCAUCUUCGUUGCCAAUU&AAAAGGUAACGAAGAUAAAAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN317_c0_g1_4755_TPlot.pdf
TRINITY_DN317_c0_g1:6518	si_a448	TRINITY_DN317_c0_g1	6507	6527	6518	-25.50	-17.10	0.670588235294118	10.5	5-18,6523-6510	1-4,6527-6524[UP5];19-21,6509-6507[UP3]	...((((((((((((((....&....))))))))))))))...	UCUUAGCAACAAUUAUCACAG&AUGAGAUAAUUGUUGUUAUAU	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN317_c0_g1_6518_TPlot.pdf
TRINITY_DN317_c0_g1:794	si_a21	TRINITY_DN317_c0_g1	783	803	794	-24.30	-17.50	0.720164609053498	9	4-21,800-783	1-3,803-801[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUAGAGCUGGAAAUGGAUUCG&CCUAUUUAUUUUUAGUUCUAA	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN317_c0_g1_794_TPlot.pdf
TRINITY_DN317_c0_g1:865	si_s741	TRINITY_DN317_c0_g1	853	874	865	-33.80	-22.40	0.662721893491124	7.5	1-9,874-866;11-15,864-860;16-18,858-856	10-10,865-865[SIL];x-x,859-859[BULt];19-21,855-853[UP3]	...(((.(((((.(((((((((&))))))))).)))))-)))...	UACGGGAUCAGUAUAUUCACCC&GGGUGAAUAGAUUGA-CCUUAA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN317_c0_g1_865_TPlot.pdf
TRINITY_DN317_c0_g1:866	si_s740	TRINITY_DN317_c0_g1	854	875	866	-35.20	-23.90	0.678977272727273	6	1-10,875-866;12-16,864-860;17-19,858-856	11-11,865-865[SIL];x-x,859-859[BULt];20-21,855-854[UP3]	..(((.(((((.((((((((((&)))))))))).)))))-)))..	ACGGGAUCAGUAUAUUCACCCG&CGGGUGAAUAGAUUGA-CCUUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN317_c0_g1_866_TPlot.pdf
TRINITY_DN317_c0_g1:867	si_s739	TRINITY_DN317_c0_g1	855	876	867	-35.60	-24.50	0.688202247191011	6	2-11,875-866;13-17,864-860;18-20,858-856	1-1,876-876[UP5];12-12,865-865[SIL];x-x,859-859[BULt];21-21,855-855[UP3]	.(((.(((((.((((((((((.&.)))))))))).)))))-))).	CGGGAUCAGUAUAUUCACCCGC&ACGGGUGAAUAGAUUGA-CCUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN317_c0_g1_867_TPlot.pdf
TRINITY_DN3180_c0_g1:1384	si_s73	TRINITY_DN3180_c0_g1	1373	1393	1384	-24.00	-18.70	0.779166666666667	8	1-13,1393-1381;16-19,1378-1375	14-15,1380-1379[SIL];20-21,1374-1373[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	CCAGGAUUGGGAGAAGAUAGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3180_c0_g1_1384_TPlot.pdf
TRINITY_DN3180_c0_g1:1385	si_s72	TRINITY_DN3180_c0_g1	1374	1394	1385	-24.10	-18.80	0.780082987551867	7.5	2-14,1393-1381;17-20,1378-1375	1-1,1394-1394[UP5];15-16,1380-1379[SIL];21-21,1374-1374[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	CAGGAUUGGGAGAAGAUAGAC&UUCUAUUUUUUUUCUUUCCUU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3180_c0_g1_1385_TPlot.pdf
TRINITY_DN3180_c0_g1:1386	si_s71	TRINITY_DN3180_c0_g1	1375	1395	1386	-25.70	-18.80	0.731517509727627	8	3-15,1393-1381;18-21,1378-1375	1-2,1395-1394[UP5];16-17,1380-1379[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AGGAUUGGGAGAAGAUAGACC&CUUCUAUUUUUUUUCUUUCCU	4	0.999999998327372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3180_c0_g1_1386_TPlot.pdf
TRINITY_DN3180_c0_g1:1485	si_a403	TRINITY_DN3180_c0_g1	1474	1494	1485	-22.00	-14.50	0.659090909090909	10	2-11,1493-1484;13-18,1482-1477	1-1,1494-1494[UP5];12-12,1483-1483[SIL];19-21,1476-1474[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	UGUUAUGGAGGAGAUAAUUCA&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3180_c0_g1_1485_TPlot.pdf
TRINITY_DN3181_c0_g1:2095	si_s898	TRINITY_DN3181_c0_g1	2084	2104	2095	-30.70	-21.00	0.684039087947883	7	1-11,2104-2094;13-18,2092-2087	12-12,2093-2093[SIL];19-21,2086-2084[UP3]	...((((((.(((((((((((&))))))))))).))))))...	CAAGAAGUUAAAGAGAAGGCU&GGCUUUCUCUUCAAUUUCAAU	4	0.999975336164604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN3181_c0_g1_2095_TPlot.pdf
TRINITY_DN3181_c0_g1:2098	si_s895	TRINITY_DN3181_c0_g1	2087	2107	2098	-31.10	-20.70	0.665594855305466	8.5	4-14,2104-2094;16-21,2092-2087	1-3,2107-2105[UP5];15-15,2093-2093[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAAGUUAAAGAGAAGGCUAUU&AUAGGCUUUCUCUUCAAUUUC	2	0.99870110772865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3181_c0_g1_2098_TPlot.pdf
TRINITY_DN3181_c0_g1:34	si_s678	TRINITY_DN3181_c0_g1	23	43	34	-25.20	-21.20	0.841269841269841	6.5	1-18,43-26	19-21,25-23[UP3]	...((((((((((((((((((&))))))))))))))))))...	CUCGAUUCGUGUUUCUGUGAU&AUUAUAGAAACAUGAGUUUAA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN3181_c0_g1_34_TPlot.pdf
TRINITY_DN31827_c0_g1:137	si_a341	TRINITY_DN31827_c0_g1	126	146	137	-27.80	-19.00	0.683453237410072	4.5	2-8,145-139;10-14,137-133;16-21,131-126	1-1,146-146[UP5];9-9,138-138[SIL];15-15,132-132[SIL]	((((((.(((((.(((((((.&.))))))).))))).))))))	AGUUAACAUUUUGGGGACAAU&CUUGUCCCGAAAAUAUUAAUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN31827_c0_g1_137_TPlot.pdf
TRINITY_DN3183_c0_g1:1105	si_a276	TRINITY_DN3183_c0_g1	1093	1116	1105	-37.90	-25.56	0.674406332453826	13.5	1-7,1116-1110;11-13,1104-1102;14-20,1100-1094	8-10,1109-1105[AILt];x-x,1101-1101[BULt];21-21,1093-1093[UP3]	.(((((((.(((.....(((((((&)))))))--...)))-))))))).	GCAGGCGAGUCUGUCAGCGUGGGC&GCCUACG--AAAAGA-UCGCUUGG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN3183_c0_g1_1105_TPlot.pdf
TRINITY_DN3183_c0_g1:1150	si_a498	TRINITY_DN3183_c0_g1	1139	1159	1150	-33.50	-22.10	0.659701492537313	8	2-18,1158-1142;20-21,1140-1139	1-1,1159-1159[UP5];19-19,1141-1141[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	CAUGGAAGAUGAAGGGUGGCG&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999999929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3183_c0_g1_1150_TPlot.pdf
TRINITY_DN3183_c0_g1:1158	si_s805	TRINITY_DN3183_c0_g1	1147	1167	1158	-28.60	-18.60	0.65034965034965	14	6-19,1162-1149	1-5,1167-1163[UP5];20-21,1148-1147[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUGAAGGGUGGCGAAGCUUAC&UUUAUCUUCGUUACCUUUUCU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3183_c0_g1_1158_TPlot.pdf
TRINITY_DN3183_c0_g1:1348	si_s832	TRINITY_DN3183_c0_g1	1337	1357	1348	-25.40	-20.90	0.822834645669291	3.5	1-8,1357-1350;10-21,1348-1337	9-9,1349-1349[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	CUUCUUUUAAGUAGUUUUUCA&UGAAAAACAAUUUGAAAGAAG	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s832_TRINITY_DN3183_c0_g1_1348_TPlot.pdf
TRINITY_DN3183_c0_g1:1349	si_s831	TRINITY_DN3183_c0_g1	1338	1358	1349	-24.00	-17.90	0.745833333333333	4.5	2-9,1357-1350;11-21,1348-1338	1-1,1358-1358[UP5];10-10,1349-1349[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UUCUUUUAAGUAGUUUUUCAG&AUGAAAAACAAUUUGAAAGAA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s831_TRINITY_DN3183_c0_g1_1349_TPlot.pdf
TRINITY_DN3183_c0_g1:1350	si_s830	TRINITY_DN3183_c0_g1	1339	1359	1350	-23.90	-17.00	0.711297071129707	6	3-10,1357-1350;12-21,1348-1339	1-2,1359-1358[UP5];11-11,1349-1349[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UCUUUUAAGUAGUUUUUCAGA&AAUGAAAAACAAUUUGAAAGA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN3183_c0_g1_1350_TPlot.pdf
TRINITY_DN3183_c0_g1:205	si_a502	TRINITY_DN3183_c0_g1	194	215	205	-32.10	-21.10	0.657320872274143	11.5	2-8,214-208;10-18,205-197	1-1,215-215[UP5];9-9,207-206[AILt];19-21,196-194[UP3]	...(((((((((..(((((((.&.)))))))-.)))))))))...	UGGCCGAGGAGGUCCGAGAGAA&GUUUUUCG-UCUUCCUUGGAAU	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3183_c0_g1_205_TPlot.pdf
TRINITY_DN3183_c0_g1:4405	si_s743	TRINITY_DN3183_c0_g1	4394	4414	4405	-29.00	-23.10	0.796551724137931	8.5	1-4,4414-4411;7-17,4408-4398	5-6,4410-4409[SIL];18-21,4397-4394[UP3]	....(((((((((((..((((&))))..)))))))))))....	UCCGGAGGUCAAUCUUGUCAC&GUGAAUAGAUUGACCUUAAAA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN3183_c0_g1_4405_TPlot.pdf
TRINITY_DN3183_c0_g1:4407	si_s741	TRINITY_DN3183_c0_g1	4396	4416	4407	-33.80	-23.30	0.689349112426036	9.5	3-6,4414-4411;9-19,4408-4398	1-2,4416-4415[UP5];7-8,4410-4409[SIL];20-21,4397-4396[UP3]	..(((((((((((..((((..&..))))..)))))))))))..	CGGAGGUCAAUCUUGUCACGA&GGGUGAAUAGAUUGACCUUAA	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN3183_c0_g1_4407_TPlot.pdf
TRINITY_DN3183_c0_g1:4408	si_s740	TRINITY_DN3183_c0_g1	4397	4417	4408	-35.20	-23.30	0.661931818181818	10.5	4-7,4414-4411;10-20,4408-4398	1-3,4417-4415[UP5];8-9,4410-4409[SIL];21-21,4397-4397[UP3]	.(((((((((((..((((...&...))))..))))))))))).	GGAGGUCAAUCUUGUCACGAA&CGGGUGAAUAGAUUGACCUUA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN3183_c0_g1_4408_TPlot.pdf
TRINITY_DN3183_c0_g1:4492	si_a629	TRINITY_DN3183_c0_g1	4481	4505	4492	-26.30	-18.20	0.692015209125475	15	1-8,4505-4498;9-20,4493-4482	x-x,4497-4494[BULt];21-21,4481-4481[UP3]	.((((((((((((....((((((((&))))))))----)))))))))))).	GAGGGAAGUCGAUUUUUGUGAUGCG&CGUAUUAU----GUCGAUUUUUUUG	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN3183_c0_g1_4492_TPlot.pdf
TRINITY_DN3183_c0_g1:4493	si_a628	TRINITY_DN3183_c0_g1	4482	4506	4493	-27.10	-17.90	0.660516605166052	15	2-9,4505-4498;10-21,4493-4482	1-1,4506-4506[UP5];x-x,4497-4494[BULt]	((((((((((((....((((((((.&.))))))))----))))))))))))	AGGGAAGUCGAUUUUUGUGAUGCGA&GCGUAUUAU----GUCGAUUUUUUU	4	0.999999896158245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN3183_c0_g1_4493_TPlot.pdf
TRINITY_DN3183_c0_g1:868	si_s394	TRINITY_DN3183_c0_g1	858	877	868	-33.40	-22.40	0.67065868263473	7	1-14,877-864;16-16,862-862;18-19,861-860	15-15,863-863[SIL];17-17,x-x[BULq];20-21,859-858[UP3]	..((-(.((((((((((((((&)))))))))))))).).))..	GGCG-CAUCCUUGGGGUGUGA&UUACAUUCCAAGGAAGACGAA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s394_TRINITY_DN3183_c0_g1_868_TPlot.pdf
TRINITY_DN3183_c0_g1:873	si_s389	TRINITY_DN3183_c0_g1	862	896	873	-38.40	-26.00	0.677083333333333	34	1-6,896-891;7-19,876-864	x-x,890-877[BULt];20-21,863-862[UP3]	..(((((((((((((..............((((((&))))))--------------)))))))))))))..	CAUCCUUGGGGUGUGAACCUCGUUUAUCGGGGCGG&CCGCCU--------------UACAUUCCAAGGAAG	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s389_TRINITY_DN3183_c0_g1_873_TPlot.pdf
TRINITY_DN3183_c0_g1:874	si_s388	TRINITY_DN3183_c0_g1	863	897	874	-37.80	-27.60	0.73015873015873	32.5	1-7,897-891;8-20,876-864	x-x,890-877[BULt];21-21,863-863[UP3]	.(((((((((((((..............(((((((&)))))))--------------))))))))))))).	AUCCUUGGGGUGUGAACCUCGUUUAUCGGGGCGGA&UCCGCCU--------------UACAUUCCAAGGAA	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s388_TRINITY_DN3183_c0_g1_874_TPlot.pdf
TRINITY_DN3183_c0_g1:875	si_s387	TRINITY_DN3183_c0_g1	864	898	875	-39.50	-27.40	0.693670886075949	32	2-8,897-891;9-21,876-864	1-1,898-898[UP5];x-x,890-877[BULt]	(((((((((((((..............(((((((.&.)))))))--------------)))))))))))))	UCCUUGGGGUGUGAACCUCGUUUAUCGGGGCGGAG&GUCCGCCU--------------UACAUUCCAAGGA	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN3183_c0_g1_875_TPlot.pdf
TRINITY_DN3183_c0_g1:876	si_s386	TRINITY_DN3183_c0_g1	865	899	876	-39.20	-26.10	0.665816326530612	33	1-1,899-899;3-9,897-891;10-21,876-865	2-2,898-898[SIL];x-x,890-877[BULt]	((((((((((((..............(((((((.(&).)))))))--------------))))))))))))	CCUUGGGGUGUGAACCUCGUUUAUCGGGGCGGAGA&UGUCCGCCU--------------UACAUUCCAAGG	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s386_TRINITY_DN3183_c0_g1_876_TPlot.pdf
TRINITY_DN31847_c0_g1:82	si_s80	TRINITY_DN31847_c0_g1	71	90	82	-28.20	-22.00	0.780141843971631	3	1-8,90-83;10-20,82-72	9-9,x-x[BULq];21-21,71-71[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	AAAGAAGAAAGG-AAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	0.999995576199483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN31847_c0_g1_82_TPlot.pdf
TRINITY_DN31847_c0_g1:83	si_s79	TRINITY_DN31847_c0_g1	72	91	83	-26.20	-22.40	0.854961832061069	2.5	1-9,91-83;11-21,82-72	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	AAGAAGAAAGG-AAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN31847_c0_g1_83_TPlot.pdf
TRINITY_DN31847_c0_g1:84	si_s77	TRINITY_DN31847_c0_g1	74	93	84	-25.50	-20.30	0.796078431372549	6	3-11,91-83;13-21,82-74	1-2,93-92[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GAAGAAAGG-AAGAAAAAGCA&UUUUUUUUCUUUCCUUUCUUC	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN31847_c0_g1_84_TPlot.pdf
TRINITY_DN31867_c0_g1:1284	si_s72	TRINITY_DN31867_c0_g1	1273	1294	1284	-24.10	-17.20	0.713692946058091	7	1-8,1294-1287;9-14,1285-1280;16-21,1278-1273	x-x,1286-1286[BULt];15-15,1279-1279[SIL]	((((((.((((((.((((((((&))))))))-)))))).))))))	AAGGAAUGAAGAGUGGAUAGAA&UUCUAUUU-UUUUUCUUUCCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN31867_c0_g1_1284_TPlot.pdf
TRINITY_DN31881_c0_g1:109	si_a318	TRINITY_DN31881_c0_g1	98	118	109	-22.50	-17.70	0.786666666666667	6	2-16,117-103	1-1,118-118[UP5];17-21,102-98[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACUGCAAAAUCAUGGAUAAAG&AUUUAUCCAUGAUUUUUUUAU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN31881_c0_g1_109_TPlot.pdf
TRINITY_DN31881_c0_g1:113	si_a314	TRINITY_DN31881_c0_g1	102	121	113	-27.10	-18.60	0.686346863468635	5	1-3,121-119;6-20,117-103	4-5,118-118[AILq];21-21,102-102[UP3]	.(((((((((((((((.-(((&)))..))))))))))))))).	CAAAAUCAUGGAUAAAG-CAA&UUGGAUUUAUCCAUGAUUUUU	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN31881_c0_g1_113_TPlot.pdf
TRINITY_DN31892_c0_g2:327	si_s883	TRINITY_DN31892_c0_g2	316	336	327	-24.30	-16.20	0.666666666666667	5.5	1-4,336-333;6-12,331-325;14-20,323-317	5-5,332-332[SIL];13-13,324-324[SIL];21-21,316-316[UP3]	.(((((((.(((((((.((((&)))).))))))).))))))).	CAAGCCUGGUUAUUUUAGGUU&AACUAAAAAUAAAUAGGCUUU	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN31892_c0_g2_327_TPlot.pdf
TRINITY_DN31895_c3_g1:723	si_s14	TRINITY_DN31895_c3_g1	712	732	723	-25.30	-16.50	0.652173913043478	11	3-5,730-728;8-11,725-722;13-21,720-712	1-2,732-731[UP5];6-7,727-726[SIL];12-12,721-721[SIL]	(((((((((.((((..(((..&..)))..)))).)))))))))	GCAAUCAAUUUGGUUUUGAGU&UAUUAUUACUAUAUUGAUUGC	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN31895_c3_g1_723_TPlot.pdf
TRINITY_DN318_c0_g1:1828	si_a627	TRINITY_DN318_c0_g1	1817	1836	1828	-29.50	-20.30	0.688135593220339	6.5	1-3,1836-1834;5-21,1833-1817	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	AGGAAAUCGAUAUGAUG-GCU&GGCGUAUUAUGUCGAUUUUUU	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN318_c0_g1_1828_TPlot.pdf
TRINITY_DN318_c0_g1:2040	si_s92	TRINITY_DN318_c0_g1	2028	2049	2040	-34.90	-23.70	0.679083094555874	4.5	1-12,2049-2038;13-17,2036-2032;19-21,2030-2028	x-x,2037-2037[BULt];18-18,2031-2031[SIL]	(((.(((((.((((((((((((&))))))))))))-))))).)))	AUUAGAGGCAGAAGAAGAAGAG&UUCUUCUUCUUC-GCUUCGGAU	4	0.99999999929713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN318_c0_g1_2040_TPlot.pdf
TRINITY_DN318_c0_g1:2048	si_s81	TRINITY_DN318_c0_g1	2037	2057	2048	-28.90	-22.90	0.792387543252595	5	1-9,2057-2049;11-21,2047-2037	10-10,2048-2048[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AGAAGAAGAAGAGGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN318_c0_g1_2048_TPlot.pdf
TRINITY_DN318_c0_g1:2173	si_a670	TRINITY_DN318_c0_g1	2162	2181	2173	-32.30	-21.00	0.65015479876161	10	1-2,2181-2180;4-6,2177-2175;9-21,2174-2162	3-3,2179-2178[AILt];7-8,x-x[BULq]	(((((((((((((--(((..((&))-.)))..)))))))))))))	GCGUGAGUGGGGA--CAAAGAG&CU-AUUGAUUCCUUAUUCACGC	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a670_TRINITY_DN318_c0_g1_2173_TPlot.pdf
TRINITY_DN318_c0_g1:2394	si_a455	TRINITY_DN318_c0_g1	2383	2403	2394	-21.10	-16.00	0.758293838862559	9.5	3-17,2401-2387	1-2,2403-2402[UP5];18-21,2386-2383[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUAUGUAUAUAGCGACAAAA&AAUUGUUGUUAUAUAUAAUAU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN318_c0_g1_2394_TPlot.pdf
TRINITY_DN3190_c0_g1:2098	si_s82	TRINITY_DN3190_c0_g1	2087	2107	2098	-28.90	-19.00	0.657439446366782	11.5	5-17,2103-2091;19-21,2089-2087	1-4,2107-2104[UP5];18-18,2090-2090[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GAGUGGGAGAAAGGAGGCACG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3190_c0_g1_2098_TPlot.pdf
TRINITY_DN3190_c0_g1:384	si_a405	TRINITY_DN3190_c0_g1	373	393	384	-19.80	-13.60	0.686868686868687	12	3-16,391-378	1-2,393-392[UP5];17-21,377-373[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGGCUUGUGAACGAGACAGGC&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3190_c0_g1_384_TPlot.pdf
TRINITY_DN3190_c0_g1:4480	si_a438	TRINITY_DN3190_c0_g1	4468	4489	4480	-31.70	-24.50	0.772870662460568	8	1-10,4489-4480;12-19,4477-4470	11-11,4479-4478[AILt];20-21,4469-4468[UP3]	..((((((((..((((((((((&))))))))))-.))))))))..	UUUUAUCUCGAAAUCCAGCGGA&UCCGUUGGAU-AUGAGAUAAUU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN3190_c0_g1_4480_TPlot.pdf
TRINITY_DN3190_c0_g1:657	si_s810	TRINITY_DN3190_c0_g1	644	665	657	-27.90	-18.20	0.652329749103943	8.5	1-7,665-659;9-13,658-654;14-20,651-645	8-8,x-x[BULq];x-x,653-652[BULt];21-21,644-644[UP3]	.(((((((..(((((-(((((((&))))))).)))))--))))))).	GAUUGGGACAGAAGG-AGCGAGG&CUUCGUUACCUUU--UCUUAAUA	3	0.999999999967537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN3190_c0_g1_657_TPlot.pdf
TRINITY_DN3190_c0_g1:699	si_s251	TRINITY_DN3190_c0_g1	689	708	699	-32.90	-23.20	0.70516717325228	8	1-11,708-698;14-19,696-691	12-13,697-697[AILq];20-21,690-689[UP3]	..((((((.-(((((((((((&)))))))))))..))))))..	CUGUGAUGC-UCGGGAGGUGC&GCAUUUCCCGAUAUAUUACUC	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s251_TRINITY_DN3190_c0_g1_699_TPlot.pdf
TRINITY_DN3190_c0_g1:700	si_s250	TRINITY_DN3190_c0_g1	690	709	700	-33.30	-23.40	0.702702702702703	7	2-12,708-698;15-20,696-691	1-1,709-709[UP5];13-14,697-697[AILq];21-21,690-690[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	UGUGAUGC-UCGGGAGGUGCG&GGCAUUUCCCGAUAUAUUACU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN3190_c0_g1_700_TPlot.pdf
TRINITY_DN3190_c0_g1:701	si_s249	TRINITY_DN3190_c0_g1	691	710	701	-33.30	-23.00	0.690690690690691	8	3-13,708-698;16-21,696-691	1-2,710-709[UP5];14-15,697-697[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	GUGAUGC-UCGGGAGGUGCGG&AGGCAUUUCCCGAUAUAUUAC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN3190_c0_g1_701_TPlot.pdf
TRINITY_DN3192_c0_g1:1161	si_a630	TRINITY_DN3192_c0_g1	1151	1170	1161	-25.80	-17.60	0.682170542635659	7	1-10,1170-1161;13-20,1159-1152	11-12,1160-1160[AILq];21-21,1151-1151[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	ACGGAAGGAG-GACAUAAUAC&GUAUUAUGUCGAUUUUUUUGA	2	0.997697409833658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN3192_c0_g1_1161_TPlot.pdf
TRINITY_DN3192_c0_g1:1162	si_a629	TRINITY_DN3192_c0_g1	1152	1171	1162	-26.30	-17.70	0.673003802281369	6	2-11,1170-1161;14-21,1159-1152	1-1,1171-1171[UP5];12-13,1160-1160[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	CGGAAGGAG-GACAUAAUACA&CGUAUUAUGUCGAUUUUUUUG	2	0.996116359839343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN3192_c0_g1_1162_TPlot.pdf
TRINITY_DN31932_c0_g1:375	si_s706	TRINITY_DN31932_c0_g1	364	385	375	-29.40	-20.00	0.680272108843537	6.5	1-8,385-378;9-19,376-366	x-x,377-377[BULt];20-21,365-364[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	AGUCCUUGUUCAUAUAGUAAAU&AUUUAUUA-GUGAACAGGGAAA	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN31932_c0_g1_375_TPlot.pdf
TRINITY_DN31932_c0_g3:4451	si_s41	TRINITY_DN31932_c0_g3	4440	4460	4451	-25.00	-18.10	0.724	4.5	1-10,4460-4451;12-19,4450-4443;20-21,4441-4440	11-11,x-x[BULq];x-x,4442-4442[BULt]	((.((((((((-((((((((((&)))))))))).))))))))-))	UGAAGAUCCAA-UAUUAGAGAU&AUCUUUAAUAAUUGGAUUU-CA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN31932_c0_g3_4451_TPlot.pdf
TRINITY_DN31932_c0_g3:4452	si_s40	TRINITY_DN31932_c0_g3	4442	4461	4452	-24.30	-17.80	0.732510288065844	5.5	2-11,4460-4451;13-20,4450-4443	1-1,4461-4461[UP5];12-12,x-x[BULq];21-21,4442-4442[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	AAGAUCCAA-UAUUAGAGAUG&AAUCUUUAAUAAUUGGAUUUC	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN31932_c0_g3_4452_TPlot.pdf
TRINITY_DN31932_c0_g3:4453	si_s39	TRINITY_DN31932_c0_g3	4443	4462	4453	-22.30	-17.80	0.798206278026906	5.5	3-12,4460-4451;14-21,4450-4443	1-2,4462-4461[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AGAUCCAA-UAUUAGAGAUGA&AAAUCUUUAAUAAUUGGAUUU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN31932_c0_g3_4453_TPlot.pdf
TRINITY_DN31932_c0_g3:4783	si_s69	TRINITY_DN31932_c0_g3	4772	4792	4783	-23.40	-15.40	0.658119658119658	8	2-13,4791-4780;15-18,4778-4775	1-1,4792-4792[UP5];14-14,4779-4779[SIL];19-21,4774-4772[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	AACGGGACAGAGAUAGAAGUA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN31932_c0_g3_4783_TPlot.pdf
TRINITY_DN31932_c0_g3:4784	si_s68	TRINITY_DN31932_c0_g3	4773	4793	4784	-23.10	-15.40	0.666666666666667	8.5	3-14,4791-4780;16-19,4778-4775	1-2,4793-4792[UP5];15-15,4779-4779[SIL];20-21,4774-4773[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	ACGGGACAGAGAUAGAAGUAA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN31932_c0_g3_4784_TPlot.pdf
TRINITY_DN31932_c0_g3:4859	si_s76	TRINITY_DN31932_c0_g3	4843	4868	4859	-23.60	-16.50	0.699152542372881	9	2-14,4867-4855;15-21,4849-4843	1-1,4868-4868[UP5];x-x,4854-4850[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	AAGAAAGACCGAGAAAGAAGGAGAAG&AUUUUUUUUCUUUC-----CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN31932_c0_g3_4859_TPlot.pdf
TRINITY_DN31932_c0_g3:4863	si_s68	TRINITY_DN31932_c0_g3	4852	4871	4863	-23.10	-15.30	0.662337662337662	9	3-8,4869-4864;10-20,4863-4853	1-2,4871-4870[UP5];9-9,x-x[BULq];21-21,4852-4852[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	CGAGAAAGAAGG-AGAAGUGU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN31932_c0_g3_4863_TPlot.pdf
TRINITY_DN31932_c0_g3:4874	si_s809	TRINITY_DN31932_c0_g3	4858	4883	4874	-28.50	-19.50	0.684210526315789	15	1-10,4883-4874;11-18,4868-4861	x-x,4873-4869[BULt];19-21,4860-4858[UP3]	...((((((((.....((((((((((&))))))))))-----))))))))...	AGAAGGAGAAGUGUUAGUAGCGAAGA&UCUUCGUUAC-----CUUUUCUUAAU	4	0.999998837853321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN31932_c0_g3_4874_TPlot.pdf
TRINITY_DN31932_c0_g3:4875	si_s808	TRINITY_DN31932_c0_g3	4859	4884	4875	-28.60	-19.50	0.681818181818182	15	2-11,4883-4874;12-19,4868-4861	1-1,4884-4884[UP5];x-x,4873-4869[BULt];20-21,4860-4859[UP3]	..((((((((.....((((((((((.&.))))))))))-----))))))))..	GAAGGAGAAGUGUUAGUAGCGAAGAG&AUCUUCGUUAC-----CUUUUCUUAA	4	0.999999898279812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN31932_c0_g3_4875_TPlot.pdf
TRINITY_DN31932_c0_g3:4876	si_s807	TRINITY_DN31932_c0_g3	4860	4885	4876	-28.90	-19.50	0.674740484429066	16	3-12,4883-4874;13-20,4868-4861	1-2,4885-4884[UP5];x-x,4873-4869[BULt];21-21,4860-4860[UP3]	.((((((((.....((((((((((..&..))))))))))-----)))))))).	AAGGAGAAGUGUUAGUAGCGAAGAGG&UAUCUUCGUUAC-----CUUUUCUUA	3	0.999999968968324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN31932_c0_g3_4876_TPlot.pdf
TRINITY_DN31932_c0_g3:4877	si_s806	TRINITY_DN31932_c0_g3	4861	4886	4877	-28.60	-19.20	0.671328671328671	12	4-13,4883-4874;14-21,4868-4861	1-3,4886-4884[UP5];x-x,4873-4869[BULt]	((((((((.....((((((((((...&...))))))))))-----))))))))	AGGAGAAGUGUUAGUAGCGAAGAGGA&UUAUCUUCGUUAC-----CUUUUCUU	2	0.999998333746896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN31932_c0_g3_4877_TPlot.pdf
TRINITY_DN31932_c0_g3:4880	si_s93	TRINITY_DN31932_c0_g3	4869	4889	4880	-34.80	-22.98	0.660344827586207	6	1-14,4889-4876;18-20,4872-4870	15-17,4875-4873[SIL];21-21,4869-4869[UP3]	.(((...((((((((((((((&))))))))))))))...))).	UGUUAGUAGCGAAGAGGAAGA&UCUUCUUCUUCGCUUCGGAUU	2	0.999999970458959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN31932_c0_g3_4880_TPlot.pdf
TRINITY_DN31932_c0_g3:4881	si_s92	TRINITY_DN31932_c0_g3	4870	4890	4881	-34.90	-23.38	0.669914040114613	5.5	1-15,4890-4876;19-21,4872-4870	16-18,4875-4873[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	GUUAGUAGCGAAGAGGAAGAG&UUCUUCUUCUUCGCUUCGGAU	4	0.999999999996286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN31932_c0_g3_4881_TPlot.pdf
TRINITY_DN31932_c0_g3:4883	si_s90	TRINITY_DN31932_c0_g3	4872	4892	4883	-35.30	-23.90	0.677053824362606	7	2-17,4891-4876;19-19,4874-4874	1-1,4892-4892[UP5];18-18,4875-4875[SIL];20-21,4873-4872[UP3]	..(.((((((((((((((((.&.)))))))))))))))).)..	UAGUAGCGAAGAGGAAGAGGA&CUUUCUUCUUCUUCGCUUCGG	4	0.999999999977159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN31932_c0_g3_4883_TPlot.pdf
TRINITY_DN31932_c0_g3:4884	si_s89	TRINITY_DN31932_c0_g3	4873	4893	4884	-35.30	-23.90	0.677053824362606	8	3-18,4891-4876;20-20,4874-4874	1-2,4893-4892[UP5];19-19,4875-4875[SIL];21-21,4873-4873[UP3]	.(.((((((((((((((((..&..)))))))))))))))).).	AGUAGCGAAGAGGAAGAGGAA&CCUUUCUUCUUCUUCGCUUCG	3	0.999999999984958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN31932_c0_g3_4884_TPlot.pdf
TRINITY_DN31932_c0_g3:4885	si_s88	TRINITY_DN31932_c0_g3	4874	4892	4885	-34.80	-24.80	0.71264367816092	7	1-3,4892-4890;6-19,4889-4876	4-5,x-x[BULq];20-21,4875-4874[UP3]	..((((((((((((((--(((&)))..))))))))))))))..	GUAGCGAAGAGGAAGA--GGA&UCCUUUCUUCUUCUUCGCUUC	2	0.999778169417867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN31932_c0_g3_4885_TPlot.pdf
TRINITY_DN31932_c0_g3:4886	si_s87	TRINITY_DN31932_c0_g3	4875	4893	4886	-32.90	-25.70	0.781155015197568	6	1-4,4893-4890;7-20,4889-4876	5-6,x-x[BULq];21-21,4875-4875[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	UAGCGAAGAGGAAGA--GGAA&UUCCUUUCUUCUUCUUCGCUU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN31932_c0_g3_4886_TPlot.pdf
TRINITY_DN31932_c0_g3:4887	si_s86	TRINITY_DN31932_c0_g3	4876	4894	4887	-32.90	-26.60	0.808510638297872	4.5	1-5,4894-4890;8-21,4889-4876	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	AGCGAAGAGGAAGA--GGAAA&UUUCCUUUCUUCUUCUUCGCU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN31932_c0_g3_4887_TPlot.pdf
TRINITY_DN31932_c0_g3:4888	si_s85	TRINITY_DN31932_c0_g3	4877	4895	4888	-33.80	-25.70	0.760355029585799	5.5	2-6,4894-4890;9-21,4889-4877	1-1,4895-4895[UP5];7-8,x-x[BULq]	(((((((((((((--(((((.&.)))))..)))))))))))))	GCGAAGAGGAAGA--GGAAAA&CUUUCCUUUCUUCUUCUUCGC	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN31932_c0_g3_4888_TPlot.pdf
TRINITY_DN31932_c0_g3:4889	si_s84	TRINITY_DN31932_c0_g3	4878	4896	4889	-32.30	-22.00	0.681114551083591	7.5	3-7,4894-4890;10-21,4889-4878	1-2,4896-4895[UP5];8-9,x-x[BULq]	((((((((((((--(((((..&..)))))..))))))))))))	CGAAGAGGAAGA--GGAAAAU&UCUUUCCUUUCUUCUUCUUCG	2	0.999999999414188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN31932_c0_g3_4889_TPlot.pdf
TRINITY_DN31932_c0_g3:4904	si_a786	TRINITY_DN31932_c0_g3	4890	4913	4904	-26.60	-17.70	0.665413533834586	8	1-6,4913-4908;8-14,4906-4900;15-21,4896-4890	7-7,4907-4907[SIL];x-x,4899-4897[BULt]	(((((((...(((((((.((((((&)))))).)))))))---)))))))	GGAAAAUAAAAGGAAGAGAGAGGA&UCUUCUAUUUUUCU---AUUUUCC	3	0.999999999999914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN31932_c0_g3_4904_TPlot.pdf
TRINITY_DN31932_c0_g3:4926	si_s74	TRINITY_DN31932_c0_g3	4915	4935	4926	-25.00	-21.00	0.84	8.5	5-21,4931-4915	1-4,4935-4932[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAAGGAGAGAAAAAAGGAAA&CUAUUUUUUUUCUUUCCUUUC	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN31932_c0_g3_4926_TPlot.pdf
TRINITY_DN31940_c3_g1:239	si_a784	TRINITY_DN31940_c3_g1	228	249	239	-24.70	-16.50	0.668016194331984	10.5	1-3,249-247;4-16,245-233	x-x,246-246[BULt];17-21,232-228[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	UAAAAAGAGAGAUAGGGGAAGU&ACU-CUUCUAUUUUUCUAUUUU	2	0.999999999962573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN31940_c3_g1_239_TPlot.pdf
TRINITY_DN3194_c0_g1:1620	si_a502	TRINITY_DN3194_c0_g1	1609	1629	1620	-32.10	-21.50	0.669781931464174	7	1-6,1629-1624;8-9,1622-1621;11-21,1619-1609	7-7,1623-1623[SIL];10-10,1620-1620[SIL]	(((((((((((.((.((((((&)))))).)).)))))))))))	AUUCCAAGGAGUACAAAGAGC&GUUUUUCGUCUUCCUUGGAAU	3	0.99999999996105	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3194_c0_g1_1620_TPlot.pdf
TRINITY_DN3194_c0_g1:1625	si_a324	TRINITY_DN3194_c0_g1	1613	1635	1625	-27.50	-19.10	0.694545454545455	8.5	1-5,1635-1631;7-12,1628-1623;13-21,1621-1613	6-6,1630-1629[AILt];x-x,1622-1622[BULt]	(((((((((.((((((..(((((&)))))-.))))))-)))))))))	CAAGGAGUACAAAGAGCGCAUGG&CCAUG-AUUUUUU-UAUUCCUUG	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN3194_c0_g1_1625_TPlot.pdf
TRINITY_DN3194_c0_g1:2089	si_a523	TRINITY_DN3194_c0_g1	2072	2098	2089	-44.10	-29.70	0.673469387755102	12	1-2,2098-2097;4-7,2095-2092;9-16,2090-2083;17-20,2076-2073	3-3,2096-2096[SIL];8-8,2091-2091[SIL];x-x,2082-2077[BULt];21-21,2072-2072[UP3]	.((((......((((((((.((((.((&)).)))).))))))))------)))).	CCGCUGUCUCGCGCGUGUCGGCCUCGC&GUAAGGCGGACACGCG------AGCGA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a523_TRINITY_DN3194_c0_g1_2089_TPlot.pdf
TRINITY_DN3194_c0_g1:2094	si_a518	TRINITY_DN3194_c0_g1	2083	2102	2094	-41.70	-28.70	0.688249400479616	9	1-2,2102-2101;5-7,2099-2097;9-12,2095-2092;14-21,2090-2083	3-4,2100-2100[AILq];8-8,2096-2096[SIL];13-13,2091-2091[SIL]	((((((((.((((.(((.-((&))..))).)))).))))))))	CGCGUGUCGGCCUCGCGG-CC&GGAAUGUAAGGCGGACACGCG	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a518_TRINITY_DN3194_c0_g1_2094_TPlot.pdf
TRINITY_DN3194_c0_g1:2464	si_a556	TRINITY_DN3194_c0_g1	2452	2474	2464	-33.40	-22.60	0.676646706586826	7	2-9,2473-2466;10-15,2464-2459;16-16,2457-2457;18-21,2455-2452	1-1,2474-2474[UP5];x-x,2465-2465[BULt];x-x,2458-2458[BULt];17-17,2456-2456[SIL]	((((.(.((((((.((((((((.&.))))))))-))))))-).))))	UUCAGGAGGGAGAUUGGAGAAAA&AUUUCUUUA-UCUCCC-CGUGAA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN3194_c0_g1_2464_TPlot.pdf
TRINITY_DN3194_c0_g1:2467	si_s76	TRINITY_DN3194_c0_g1	2454	2476	2467	-23.60	-16.00	0.677966101694915	11	2-10,2475-2467;11-20,2464-2455	1-1,2476-2476[UP5];x-x,2466-2465[BULt];21-21,2454-2454[UP3]	.((((((((((..(((((((((.&.)))))))))--)))))))))).	CAGGAGGGAGAUUGGAGAAAAGC&AUUUUUUUUC--UUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3194_c0_g1_2467_TPlot.pdf
TRINITY_DN3195_c0_g1:3671	si_s877	TRINITY_DN3195_c0_g1	3660	3681	3671	-22.80	-16.50	0.723684210526316	7	1-8,3681-3674;9-17,3672-3664	x-x,3673-3673[BULt];18-21,3663-3660[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	AGUAUAUUUUUAGAUUCUGAGA&UCUUAGAA-CUAAAAAUAAAUA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s877_TRINITY_DN3195_c0_g1_3671_TPlot.pdf
TRINITY_DN31968_c0_g1:1452	si_a494	TRINITY_DN31968_c0_g1	1442	1461	1452	-29.50	-19.60	0.664406779661017	12	6-13,1456-1449;15-21,1448-1442	1-5,1461-1457[UP5];14-14,x-x[BULq]	(((((((-((((((((.....&.....)))))))).)))))))	GAAGACG-AAGAUGACGAGUC&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999992352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN31968_c0_g1_1452_TPlot.pdf
TRINITY_DN31968_c0_g1:1578	si_s374	TRINITY_DN31968_c0_g1	1562	1588	1578	-45.60	-29.70	0.651315789473684	13	4-9,1585-1580;10-15,1578-1573;16-21,1567-1562	1-3,1588-1586[UP5];x-x,1579-1579[BULt];x-x,1572-1568[BULt]	((((((.....((((((.((((((...&...))))))-))))))-----))))))	AGGCGGCGUGAGCGCGCAGAGCGACAA&CGAUCGCUC-GCGUGU-----CCGCCU	4	0.999944831616923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN31968_c0_g1_1578_TPlot.pdf
TRINITY_DN31968_c1_g1:123	si_s82	TRINITY_DN31968_c1_g1	112	132	123	-28.90	-19.80	0.685121107266436	13	8-21,125-112	1-7,132-126[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAGAAGAAAGGCCCACAG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN31968_c1_g1_123_TPlot.pdf
TRINITY_DN3196_c0_g1:376	si_s805	TRINITY_DN3196_c0_g1	364	385	376	-28.60	-19.40	0.678321678321678	13	5-10,381-376;11-21,374-364	1-4,385-382[UP5];x-x,375-375[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	AGAGGAGGUGAGUGGAGAACAA&UUUAUCUUCG-UUACCUUUUCU	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3196_c0_g1_376_TPlot.pdf
TRINITY_DN31974_c0_g1:162	si_s84	TRINITY_DN31974_c0_g1	151	171	162	-32.30	-21.80	0.674922600619195	4.5	1-13,171-159;15-19,157-153	14-14,158-158[SIL];20-21,152-151[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AUGAGAAAAAGAAAGGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN31974_c0_g1_162_TPlot.pdf
TRINITY_DN31974_c0_g1:163	si_s83	TRINITY_DN31974_c0_g1	152	172	163	-30.90	-22.00	0.711974110032362	4.5	2-14,171-159;16-20,157-153	1-1,172-172[UP5];15-15,158-158[SIL];21-21,152-152[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UGAGAAAAAGAAAGGGAAGAG&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN31974_c0_g1_163_TPlot.pdf
TRINITY_DN31974_c0_g1:165	si_s81	TRINITY_DN31974_c0_g1	154	174	165	-28.90	-22.80	0.788927335640139	4	2-16,173-159;18-21,157-154	1-1,174-174[UP5];17-17,158-158[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	AGAAAAAGAAAGGGAAGAGAG&UUUUCUUUCCUUUCUUCUUCU	4	0.999920005932043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN31974_c0_g1_165_TPlot.pdf
TRINITY_DN31974_c0_g1:166	si_s80	TRINITY_DN31974_c0_g1	155	175	166	-28.20	-23.00	0.815602836879433	4	1-17,175-159;19-21,157-155	18-18,158-158[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	GAAAAAGAAAGGGAAGAGAGA&UUUUUCUUUCCUUUCUUCUUC	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN31974_c0_g1_166_TPlot.pdf
TRINITY_DN31974_c0_g1:167	si_s79	TRINITY_DN31974_c0_g1	153	176	167	-26.20	-21.40	0.816793893129771	7.5	2-17,175-160;18-21,156-153	1-1,176-176[UP5];x-x,159-157[BULt]	((((...((((((((((((((((.&.))))))))))))))))---))))	GAGAAAAAGAAAGGGAAGAGAGAC&UUUUUUCUUUCCUUUCU---UCUU	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN31974_c0_g1_167_TPlot.pdf
TRINITY_DN31974_c0_g1:267	si_a411	TRINITY_DN31974_c0_g1	256	276	267	-17.90	-12.40	0.692737430167598	8	1-14,276-263	15-21,262-256[UP3]	.......((((((((((((((&)))))))))))))).......	AUAAAUAUAGAUAUAAACAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.999996737848876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN31974_c0_g1_267_TPlot.pdf
TRINITY_DN31974_c0_g1:44	si_a363	TRINITY_DN31974_c0_g1	33	53	44	-26.40	-19.90	0.753787878787879	5	2-12,52-42;14-20,40-34	1-1,53-53[UP5];13-13,41-41[SIL];21-21,33-33[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UUUUUUGAACCGAUCGGAAUU&UAUUUUGAUCGGAUCAAAAAU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN31974_c0_g1_44_TPlot.pdf
TRINITY_DN3197_c0_g1:5765	si_a636	TRINITY_DN3197_c0_g1	5754	5774	5765	-26.30	-18.20	0.692015209125475	6.5	1-13,5774-5762;16-21,5759-5754	14-15,5761-5760[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UGUUACGAAGGAAAAUUGGCA&UGUCGAUUUUUUUGAGUAAUA	2	0.997863096634582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN3197_c0_g1_5765_TPlot.pdf
TRINITY_DN3197_c0_g1:6838	si_a466	TRINITY_DN3197_c0_g1	6827	6847	6838	-21.50	-14.90	0.693023255813954	3.5	1-8,6847-6840;10-13,6838-6835;15-21,6833-6827	9-9,6839-6839[SIL];14-14,6834-6834[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	GCAAUAAAUACACAUUAUAUA&UAUAUAAUAUGUAAUUAUUGU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN3197_c0_g1_6838_TPlot.pdf
TRINITY_DN31982_c0_g1:193	si_s546	TRINITY_DN31982_c0_g1	182	202	193	-26.20	-17.70	0.675572519083969	7	1-2,202-201;4-17,199-186	3-3,200-200[SIL];18-21,185-182[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUUAGAUUUUAUUUUGAUGGG&CCGAUCAAAAUAGAAUUAAUA	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN31982_c0_g1_193_TPlot.pdf
TRINITY_DN31982_c0_g1:194	si_s545	TRINITY_DN31982_c0_g1	183	203	194	-26.80	-17.70	0.66044776119403	7	2-3,202-201;5-18,199-186	1-1,203-203[UP5];4-4,200-200[SIL];19-21,185-183[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	UUAGAUUUUAUUUUGAUGGGU&UCCGAUCAAAAUAGAAUUAAU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s545_TRINITY_DN31982_c0_g1_194_TPlot.pdf
TRINITY_DN31982_c0_g1:262	si_a69	TRINITY_DN31982_c0_g1	251	271	262	-24.00	-15.70	0.654166666666667	6	1-12,271-260;14-18,258-254	13-13,259-259[SIL];19-21,253-251[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AUAAAGAGGAAUUUGAAGGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN31982_c0_g1_262_TPlot.pdf
TRINITY_DN3198_c0_g1:1327	si_a471	TRINITY_DN3198_c0_g1	1315	1336	1327	-21.10	-14.10	0.66824644549763	9.5	1-10,1336-1327;11-17,1325-1319	x-x,1326-1326[BULt];18-21,1318-1315[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	ACAAAACGAUGUAUUGCAUGUU&AAUAUGUAAU-UAUUGUUAUAU	4	0.999999111376628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN3198_c0_g1_1327_TPlot.pdf
TRINITY_DN3198_c0_g1:1329	si_a469	TRINITY_DN3198_c0_g1	1317	1338	1329	-21.10	-14.60	0.691943127962085	9	2-12,1337-1327;13-19,1325-1319	1-1,1338-1338[UP5];x-x,1326-1326[BULt];20-21,1318-1317[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	AAAACGAUGUAUUGCAUGUUGA&AUAAUAUGUAAU-UAUUGUUAU	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN3198_c0_g1_1329_TPlot.pdf
TRINITY_DN3198_c0_g1:878	si_a303	TRINITY_DN3198_c0_g1	867	887	878	-28.40	-18.60	0.654929577464789	14	5-9,883-879;11-19,877-869	1-4,887-884[UP5];10-10,878-878[SIL];20-21,868-867[UP3]	..(((((((((.(((((....&....))))).)))))))))..	UAGAAUCCGAGGGAGUUAGAG&AAAAGAUUCGCUUGGAUUUAU	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN3198_c0_g1_878_TPlot.pdf
TRINITY_DN3198_c0_g1:879	si_a302	TRINITY_DN3198_c0_g1	868	888	879	-28.20	-18.60	0.659574468085106	15	6-10,883-879;12-20,877-869	1-5,888-884[UP5];11-11,878-878[SIL];21-21,868-868[UP3]	.(((((((((.(((((.....&.....))))).))))))))).	AGAAUCCGAGGGAGUUAGAGA&AAAAAGAUUCGCUUGGAUUUA	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN3198_c0_g1_879_TPlot.pdf
TRINITY_DN3198_c0_g1:880	si_a301	TRINITY_DN3198_c0_g1	869	889	880	-27.80	-18.10	0.651079136690648	16	7-11,883-879;13-21,877-869	1-6,889-884[UP5];12-12,878-878[SIL]	(((((((((.(((((......&......))))).)))))))))	GAAUCCGAGGGAGUUAGAGAA&AAAAAAGAUUCGCUUGGAUUU	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN3198_c0_g1_880_TPlot.pdf
TRINITY_DN3198_c0_g1:881	si_a502	TRINITY_DN3198_c0_g1	870	891	881	-32.10	-23.40	0.728971962616822	11.5	1-7,891-885;10-19,881-872	8-9,884-882[AILt];20-21,871-870[UP3]	..((((((((((...(((((((&)))))))-..))))))))))..	AAUCCGAGGGAGUUAGAGAAGC&GUUUUUC-GUCUUCCUUGGAAU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3198_c0_g1_881_TPlot.pdf
TRINITY_DN3198_c0_g1:882	si_a501	TRINITY_DN3198_c0_g1	871	892	882	-33.50	-23.50	0.701492537313433	11	2-8,891-885;11-20,881-872	1-1,892-892[UP5];9-10,884-882[AILt];21-21,871-871[UP3]	.((((((((((...(((((((.&.)))))))-..)))))))))).	AUCCGAGGGAGUUAGAGAAGCA&CGUUUUUC-GUCUUCCUUGGAA	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3198_c0_g1_882_TPlot.pdf
TRINITY_DN3198_c0_g1:883	si_a500	TRINITY_DN3198_c0_g1	872	893	883	-34.40	-23.30	0.677325581395349	12	3-9,891-885;12-21,881-872	1-2,893-892[UP5];10-11,884-882[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	UCCGAGGGAGUUAGAGAAGCAG&UCGUUUUUC-GUCUUCCUUGGA	4	0.999999262038053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3198_c0_g1_883_TPlot.pdf
TRINITY_DN3198_c0_g1:886	si_a552	TRINITY_DN3198_c0_g1	874	895	886	-33.10	-22.00	0.664652567975831	6	1-4,895-892;6-13,890-883;15-19,881-877;20-21,875-874	5-5,891-891[SIL];14-14,882-882[SIL];x-x,876-876[BULt]	((.(((((.((((((((.((((&)))).)))))))).)))))-))	CGAGGGAGUUAGAGAAGCAGAU&AUCUAUUUCUUUAUCUCCC-CG	2	0.986684328710919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN3198_c0_g1_886_TPlot.pdf
TRINITY_DN3198_c0_g1:887	si_a551	TRINITY_DN3198_c0_g1	876	896	887	-31.60	-20.60	0.651898734177215	7	2-5,895-892;7-14,890-883;16-20,881-877	1-1,896-896[UP5];6-6,891-891[SIL];15-15,882-882[SIL];21-21,876-876[UP3]	.(((((.((((((((.((((.&.)))).)))))))).))))).	AGGGAGUUAGAGAAGCAGAUA&AAUCUAUUUCUUUAUCUCCCC	2	0.998999857313047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3198_c0_g1_887_TPlot.pdf
TRINITY_DN3198_c0_g1:888	si_a550	TRINITY_DN3198_c0_g1	877	897	888	-30.90	-20.60	0.666666666666667	7.5	3-6,895-892;8-15,890-883;17-21,881-877	1-2,897-896[UP5];7-7,891-891[SIL];16-16,882-882[SIL]	(((((.((((((((.((((..&..)))).)))))))).)))))	GGGAGUUAGAGAAGCAGAUAU&CAAUCUAUUUCUUUAUCUCCC	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN3198_c0_g1_888_TPlot.pdf
TRINITY_DN3199_c0_g1:2732	si_s638	TRINITY_DN3199_c0_g1	2720	2741	2732	-40.30	-30.40	0.754342431761787	6.5	2-6,2740-2736;8-13,2734-2729;14-21,2727-2720	1-1,2741-2741[UP5];7-7,2735-2735[SIL];x-x,2728-2728[BULt]	((((((((.((((((.(((((.&.))))).))))))-))))))))	UGUCGAGGUGCAAGCUCCUGCU&CGUAGGCGUUUGC-CCUCGAUA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN3199_c0_g1_2732_TPlot.pdf
TRINITY_DN319_c0_g1:711	si_a588	TRINITY_DN319_c0_g1	700	720	711	-29.00	-19.00	0.655172413793103	12	7-17,714-704;19-21,702-700	1-6,720-715[UP5];18-18,703-703[SIL]	(((.(((((((((((......&......))))))))))).)))	AAAUUUCUGUCCUUCAUCAAG&UAACAAGAAGGACAGAAUUUU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN319_c0_g1_711_TPlot.pdf
TRINITY_DN319_c0_g1:8498	si_s693	TRINITY_DN319_c0_g1	8486	8507	8498	-23.90	-17.70	0.740585774058577	4.5	1-11,8507-8497;12-19,8495-8488	x-x,8496-8496[BULt];20-21,8487-8486[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	GUAUAAAUUGUACUAAUUAAAC&GUUUAAUUAGU-CGAUUUAUUA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN319_c0_g1_8498_TPlot.pdf
TRINITY_DN31_c0_g1:1344	si_a630	TRINITY_DN31_c0_g1	1333	1360	1344	-25.80	-17.10	0.662790697674419	17.5	1-5,1360-1356;6-19,1348-1335;21-21,1333-1333	x-x,1355-1349[BULt];20-20,1334-1334[SIL]	(.((((((((((((((.......(((((&)))))-------)))))))))))))).)	UGAAAAAGAUCGACGUCUUGGUAGAUAC&GUAUU-------AUGUCGAUUUUUUUGA	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN31_c0_g1_1344_TPlot.pdf
TRINITY_DN31_c0_g1:3333	si_s888	TRINITY_DN31_c0_g1	3322	3343	3333	-26.80	-22.00	0.82089552238806	5.5	3-7,3341-3337;8-21,3335-3322	1-2,3343-3342[UP5];x-x,3336-3336[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	AAGAGGAAGCCUAUGUUAUUCA&AAAAUAA-AUAGGCUUUCUCUU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN31_c0_g1_3333_TPlot.pdf
TRINITY_DN31_c0_g1:3334	si_s887	TRINITY_DN31_c0_g1	3323	3344	3334	-26.80	-21.20	0.791044776119403	7.5	4-8,3341-3337;9-21,3335-3323	1-3,3344-3342[UP5];x-x,3336-3336[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	AGAGGAAGCCUAUGUUAUUCAC&AAAAAUAA-AUAGGCUUUCUCU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN31_c0_g1_3334_TPlot.pdf
TRINITY_DN31_c0_g1:3481	si_s667	TRINITY_DN31_c0_g1	3470	3491	3481	-28.90	-19.20	0.664359861591695	9	1-8,3491-3484;11-16,3480-3475;18-21,3473-3470	9-10,3483-3481[AILt];17-17,3474-3474[SIL]	((((.((((((...((((((((&))))))))-..)))))).))))	UUUCGGUAGUCUAUUUCGGUCC&GGAUCGAA-UUGAUUAUAGAAA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN31_c0_g1_3481_TPlot.pdf
TRINITY_DN31_c0_g1:3645	si_s68	TRINITY_DN31_c0_g1	3634	3654	3645	-23.10	-15.30	0.662337662337662	7	2-10,3653-3645;12-18,3643-3637	1-1,3654-3654[UP5];11-11,3644-3644[SIL];19-21,3636-3634[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	GUUGAAAAAAUAUGGAAGUUU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN31_c0_g1_3645_TPlot.pdf
TRINITY_DN31_c0_g1:3775	si_a403	TRINITY_DN31_c0_g1	3764	3784	3775	-22.00	-16.10	0.731818181818182	6	2-17,3783-3768	1-1,3784-3784[UP5];18-21,3767-3764[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAAAUAAACAAAACAAUUUG&AGAAUUGUUUUGUUUAUAUUU	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN31_c0_g1_3775_TPlot.pdf
TRINITY_DN31_c0_g1:3776	si_a402	TRINITY_DN31_c0_g1	3765	3785	3776	-22.40	-16.10	0.71875	7	3-18,3783-3768	1-2,3785-3784[UP5];19-21,3767-3765[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAUAAACAAAACAAUUUGU&UAGAAUUGUUUUGUUUAUAUU	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN31_c0_g1_3776_TPlot.pdf
TRINITY_DN31_c0_g1:4038	si_s888	TRINITY_DN31_c0_g1	4027	4048	4038	-26.80	-19.20	0.716417910447761	9.5	3-7,4046-4042;10-21,4038-4027	1-2,4048-4047[UP5];8-9,4041-4039[AILt]	((((((((((((...(((((..&..)))))-..))))))))))))	AAGAGGAAGCCUUUCUUAUUGA&AAAAUAA-AUAGGCUUUCUCUU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN31_c0_g1_4038_TPlot.pdf
TRINITY_DN31_c0_g1:4039	si_s887	TRINITY_DN31_c0_g1	4028	4049	4039	-26.80	-18.40	0.686567164179104	11.5	4-8,4046-4042;11-21,4038-4028	1-3,4049-4047[UP5];9-10,4041-4039[AILt]	(((((((((((...(((((...&...)))))-..)))))))))))	AGAGGAAGCCUUUCUUAUUGAC&AAAAAUAA-AUAGGCUUUCUCU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN31_c0_g1_4039_TPlot.pdf
TRINITY_DN31_c0_g1:4199	si_a874	TRINITY_DN31_c0_g1	4189	4208	4199	-26.70	-18.80	0.704119850187266	7.5	2-15,4207-4194;17-18,4193-4192	1-1,4208-4208[UP5];16-16,x-x[BULq];19-21,4191-4189[UP3]	...((-((((((((((((((.&.)))))))))))))).))...	UUCGG-UGCAACUGGAUCUUC&AAAGAUUUAGUUGCAAUCAAU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN31_c0_g1_4199_TPlot.pdf
TRINITY_DN31_c0_g1:4201	si_a872	TRINITY_DN31_c0_g1	4191	4210	4201	-27.00	-18.80	0.696296296296296	9.5	4-17,4207-4194;19-20,4193-4192	1-3,4210-4208[UP5];18-18,x-x[BULq];21-21,4191-4191[UP3]	.((-((((((((((((((...&...)))))))))))))).)).	CGG-UGCAACUGGAUCUUCGA&UUAAAGAUUUAGUUGCAAUCA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN31_c0_g1_4201_TPlot.pdf
TRINITY_DN31_c0_g1:4203	si_a870	TRINITY_DN31_c0_g1	4192	4212	4203	-24.80	-18.50	0.745967741935484	13	6-19,4207-4194	1-5,4212-4208[UP5];20-21,4193-4192[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGUGCAACUGGAUCUUCGAAG&UAUUAAAGAUUUAGUUGCAAU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN31_c0_g1_4203_TPlot.pdf
TRINITY_DN32016_c0_g1:303	si_s797	TRINITY_DN32016_c0_g1	292	311	303	-30.00	-20.60	0.686666666666667	7.5	1-6,311-306;8-18,305-295	7-7,x-x[BULq];19-21,294-292[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	AACCGAAGAUGGAA-ACGAGU&GCUCGUAUUUUAUCUUCGUUA	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN32016_c0_g1_303_TPlot.pdf
TRINITY_DN32016_c0_g1:320	si_s326	TRINITY_DN32016_c0_g1	308	329	320	-29.60	-20.00	0.675675675675676	6	1-9,329-321;11-14,319-316;15-21,314-308	10-10,320-320[SIL];x-x,315-315[BULt]	(((((((.((((.(((((((((&))))))))).))))-)))))))	GAGUUGUGAUGUAUGUAAUAGG&CUUGUUACAAACAU-ACGAUUC	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s326_TRINITY_DN32016_c0_g1_320_TPlot.pdf
TRINITY_DN32016_c0_g1:323	si_s323	TRINITY_DN32016_c0_g1	311	332	323	-30.10	-19.60	0.651162790697674	4.5	1-12,332-321;14-17,319-316;18-21,314-311	13-13,320-320[SIL];x-x,315-315[BULt]	((((.((((.((((((((((((&)))))))))))).))))-))))	UUGUGAUGUAUGUAAUAGGAAG&CUUCUUGUUACAAACAU-ACGA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s323_TRINITY_DN32016_c0_g1_323_TPlot.pdf
TRINITY_DN32016_c0_g2:383	si_s549	TRINITY_DN32016_c0_g2	374	392	383	-20.50	-13.40	0.653658536585366	4.5	2-13,391-380;16-20,379-375	1-1,392-392[UP5];14-15,x-x[BULq];21-21,374-374[UP3]	.(((((--((((((((((((.&.))))))))))))..))))).	CGAUAU--AUUCUAUUUUGAA&AUCAAAAUAGAAUUAAUAUUU	2	0.980657087003412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN32016_c0_g2_383_TPlot.pdf
TRINITY_DN3201_c0_g1:2590	si_a784	TRINITY_DN3201_c0_g1	2579	2600	2590	-24.70	-17.40	0.704453441295547	7.5	2-9,2599-2592;10-17,2590-2583	1-1,2600-2600[UP5];x-x,2591-2591[BULt];18-21,2582-2579[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	CCCUUAGAGAAAUUAGAAGAGA&ACUCUUCUA-UUUUUCUAUUUU	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3201_c0_g1_2590_TPlot.pdf
TRINITY_DN3201_c0_g1:2593	si_a782	TRINITY_DN3201_c0_g1	2581	2602	2593	-26.40	-17.40	0.659090909090909	9.5	4-11,2599-2592;12-19,2590-2583	1-3,2602-2600[UP5];x-x,2591-2591[BULt];20-21,2582-2581[UP3]	..((((((((.((((((((...&...))))))))-))))))))..	CUUAGAGAAAUUAGAAGAGACA&CAACUCUUCUA-UUUUUCUAUU	4	0.999999998361545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN3201_c0_g1_2593_TPlot.pdf
TRINITY_DN3201_c0_g1:2786	si_s85	TRINITY_DN3201_c0_g1	2774	2795	2786	-33.80	-23.30	0.689349112426036	5.5	2-11,2794-2785;13-17,2784-2780;18-21,2777-2774	1-1,2795-2795[UP5];12-12,x-x[BULq];x-x,2779-2778[BULt]	((((..(((((-((((((((((.&.)))))))))).)))))--))))	GCGAUAAGGAG-AGAAAGGAAAA&CUUUCCUUUCUUCUUCU--UCGC	2	0.999999344845181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3201_c0_g1_2786_TPlot.pdf
TRINITY_DN3201_c0_g1:2787	si_s75	TRINITY_DN3201_c0_g1	2775	2796	2787	-24.00	-18.20	0.758333333333333	7.5	3-18,2794-2779;19-20,2777-2776	1-2,2796-2795[UP5];x-x,2778-2778[BULt];21-21,2775-2775[UP3]	.((.((((((((((((((((..&..))))))))))))))))-)).	CGAUAAGGAGAGAAAGGAAAAA&UAUUUUUUUUCUUUCCUU-UCU	3	0.999999999083711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3201_c0_g1_2787_TPlot.pdf
TRINITY_DN32025_c0_g1:100	si_s64	TRINITY_DN32025_c0_g1	89	111	100	-24.10	-17.80	0.738589211618257	9.5	4-6,108-106;7-21,103-89	1-3,111-109[UP5];x-x,105-104[BULt]	(((((((((((((((..(((...&...)))--)))))))))))))))	AAAAGAAAUAGAAGUCAUGCAUU&UUAGCA--ACUUCUAUUUUUUUU	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN32025_c0_g1_100_TPlot.pdf
TRINITY_DN32025_c0_g1:101	si_s63	TRINITY_DN32025_c0_g1	90	112	101	-25.80	-16.90	0.655038759689922	11.5	5-7,108-106;8-21,103-90	1-4,112-109[UP5];x-x,105-104[BULt]	((((((((((((((..(((....&....)))--))))))))))))))	AAAGAAAUAGAAGUCAUGCAUUA&GUUAGCA--ACUUCUAUUUUUUU	3	0.999999989599644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN32025_c0_g1_101_TPlot.pdf
TRINITY_DN32025_c0_g1:95	si_s69	TRINITY_DN32025_c0_g1	83	104	95	-23.40	-17.30	0.739316239316239	4.5	2-16,103-89;17-20,87-84	1-1,104-104[UP5];x-x,88-88[BULt];21-21,83-83[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	CAGAGAAAAAGAAAUAGAAGUC&AACUUCUAUUUUUUUU-CUUUC	4	0.999999998747172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN32025_c0_g1_95_TPlot.pdf
TRINITY_DN3202_c0_g1:1878	si_s437	TRINITY_DN3202_c0_g1	1867	1887	1878	-19.70	-14.30	0.725888324873097	8.5	1-15,1887-1873	16-21,1872-1867[UP3]	......(((((((((((((((&)))))))))))))))......	UUGAAAAUGAUAUGUGAUUGU&AUAAUUACAUAUUAUAUAUAA	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN3202_c0_g1_1878_TPlot.pdf
TRINITY_DN32048_c0_g1:212	si_s282	TRINITY_DN32048_c0_g1	201	220	212	-33.10	-23.30	0.70392749244713	6.5	3-9,218-212;11-21,211-201	1-2,220-219[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	AAUCGACUGGG-GUAUUGUCA&ACAUAAUACGCCUAGUCGAUU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s282_TRINITY_DN32048_c0_g1_212_TPlot.pdf
TRINITY_DN3205_c0_g1:1230	si_s73	TRINITY_DN3205_c0_g1	1220	1239	1230	-24.00	-15.60	0.65	9.5	2-11,1238-1229;13-18,1228-1223	1-1,1239-1239[UP5];12-12,x-x[BULq];19-21,1222-1220[UP3]	...((((((-((((((((((.&.)))))))))).))))))...	AUCGGAGAG-AGGAAAAUGGU&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3205_c0_g1_1230_TPlot.pdf
TRINITY_DN3205_c0_g1:1838	si_s593	TRINITY_DN3205_c0_g1	1828	1847	1838	-33.00	-21.60	0.654545454545455	7	1-13,1847-1835;15-18,1834-1831	14-14,x-x[BULq];19-21,1830-1828[UP3]	...((((-(((((((((((((&))))))))))))).))))...	CACUCGC-UGGAUUUGUUCGU&AUGGAUAAAUCCAAGCGAAUC	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s593_TRINITY_DN3205_c0_g1_1838_TPlot.pdf
TRINITY_DN3205_c0_g1:1839	si_s592	TRINITY_DN3205_c0_g1	1829	1848	1839	-32.70	-21.70	0.663608562691131	7	2-14,1847-1835;16-19,1834-1831	1-1,1848-1848[UP5];15-15,x-x[BULq];20-21,1830-1829[UP3]	..((((-(((((((((((((.&.))))))))))))).))))..	ACUCGC-UGGAUUUGUUCGUC&CAUGGAUAAAUCCAAGCGAAU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s592_TRINITY_DN3205_c0_g1_1839_TPlot.pdf
TRINITY_DN3205_c0_g1:1840	si_s591	TRINITY_DN3205_c0_g1	1830	1850	1840	-33.60	-22.40	0.666666666666667	7	1-2,1850-1849;3-15,1847-1835;17-20,1834-1831	x-x,1848-1848[BULt];16-16,x-x[BULq];21-21,1830-1830[UP3]	.((((-(((((((((((((.((&))-))))))))))))).)))).	CUCGC-UGGAUUUGUUCGUCGA&UC-AUGGAUAAAUCCAAGCGAA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s591_TRINITY_DN3205_c0_g1_1840_TPlot.pdf
TRINITY_DN3205_c0_g1:1841	si_s590	TRINITY_DN3205_c0_g1	1831	1851	1841	-33.70	-23.10	0.685459940652819	6	1-3,1851-1849;4-16,1847-1835;18-21,1834-1831	x-x,1848-1848[BULt];17-17,x-x[BULq]	((((-(((((((((((((.(((&)))-))))))))))))).))))	UCGC-UGGAUUUGUUCGUCGAU&AUC-AUGGAUAAAUCCAAGCGA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s590_TRINITY_DN3205_c0_g1_1841_TPlot.pdf
TRINITY_DN3205_c0_g1:1843	si_s588	TRINITY_DN3205_c0_g1	1833	1853	1843	-31.20	-21.00	0.673076923076923	6	1-5,1853-1849;6-18,1847-1835;20-21,1834-1833	x-x,1848-1848[BULt];19-19,x-x[BULq]	((-(((((((((((((.(((((&)))))-))))))))))))).))	GC-UGGAUUUGUUCGUCGAUUU&AAAUC-AUGGAUAAAUCCAAGC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s588_TRINITY_DN3205_c0_g1_1843_TPlot.pdf
TRINITY_DN3205_c0_g1:1846	si_s585	TRINITY_DN3205_c0_g1	1835	1856	1846	-27.00	-18.60	0.688888888888889	9.5	4-8,1853-1849;9-21,1847-1835	1-3,1856-1854[UP5];x-x,1848-1848[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	UGGAUUUGUUCGUCGAUUUCAU&AAAAAAUC-AUGGAUAAAUCCA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN3205_c0_g1_1846_TPlot.pdf
TRINITY_DN3205_c0_g1:760	si_a314	TRINITY_DN3205_c0_g1	749	769	760	-27.10	-18.30	0.675276752767528	9	1-6,769-764;9-9,761-761;11-20,759-750	7-8,763-762[SIL];10-10,760-760[SIL];21-21,749-749[UP3]	.((((((((((.(..((((((&))))))..).)))))))))).	CGAAAUCGUGGCUUUAUCCGA&UUGGAUUUAUCCAUGAUUUUU	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3205_c0_g1_760_TPlot.pdf
TRINITY_DN3205_c0_g1:761	si_a313	TRINITY_DN3205_c0_g1	750	770	761	-28.70	-21.20	0.738675958188153	8	1-7,770-764;10-10,761-761;12-21,759-750	8-9,763-762[SIL];11-11,760-760[SIL]	((((((((((.(..(((((((&)))))))..).))))))))))	GAAAUCGUGGCUUUAUCCGAG&CUUGGAUUUAUCCAUGAUUUU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN3205_c0_g1_761_TPlot.pdf
TRINITY_DN3205_c0_g1:776	si_s79	TRINITY_DN3205_c0_g1	765	787	776	-26.20	-17.30	0.66030534351145	8	1-9,787-779;10-18,776-768	x-x,778-777[BULt];19-21,767-765[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	UCCGAGAAAGGAAUAAGAAAAAG&UUUUUUCUU--UCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3205_c0_g1_776_TPlot.pdf
TRINITY_DN3205_c0_g1:779	si_s76	TRINITY_DN3205_c0_g1	768	788	779	-23.60	-18.60	0.788135593220339	6.5	1-9,788-780;12-21,777-768	10-11,779-778[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GAGAAAGGAAUAAGAAAAAGU&AUUUUUUUUCUUUCCUUUCUU	3	0.999999997153094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3205_c0_g1_779_TPlot.pdf
TRINITY_DN3208_c0_g1:203	si_a100	TRINITY_DN3208_c0_g1	192	212	203	-29.70	-22.30	0.750841750841751	5.5	1-7,212-206;9-21,204-192	8-8,205-205[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	CGUGUUUUAUUUUGGUUGCUU&AGGUAACGAAGAUAAAAUACG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a100_TRINITY_DN3208_c0_g1_203_TPlot.pdf
TRINITY_DN3208_c0_g1:446	si_s764	TRINITY_DN3208_c0_g1	434	455	446	-25.70	-18.52	0.720622568093385	10	1-10,455-446;14-20,441-435	11-13,445-442[AILt];21-21,434-434[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	UAUGGUAGAGGUGUCGUUGUUG&CAACAACGAU-UAAUUACUAUU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN3208_c0_g1_446_TPlot.pdf
TRINITY_DN3208_c0_g1:447	si_s763	TRINITY_DN3208_c0_g1	435	456	447	-26.50	-18.72	0.706415094339623	9	2-11,455-446;15-21,441-435	1-1,456-456[UP5];12-14,445-442[AILt]	(((((((....((((((((((.&.))))))))))-...)))))))	AUGGUAGAGGUGUCGUUGUUGG&ACAACAACGAU-UAAUUACUAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s763_TRINITY_DN3208_c0_g1_447_TPlot.pdf
TRINITY_DN3210_c0_g1:231	si_a628	TRINITY_DN3210_c0_g1	220	246	231	-27.10	-17.74	0.654612546125461	18.5	1-6,246-241;9-19,232-222	7-8,240-233[AILt];20-21,221-220[UP3]	..(((((((((((........((((((&))))))------..)))))))))))..	CCAAAGAUCGACAAAUGUUUUAUACGC&GCGUAU------UAUGUCGAUUUUUUU	3	0.999999977095107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN3210_c0_g1_231_TPlot.pdf
TRINITY_DN3210_c0_g1:247	si_s775	TRINITY_DN3210_c0_g1	235	257	247	-25.00	-16.30	0.652	7	2-6,256-252;8-12,249-245;13-21,243-235	1-1,257-257[UP5];7-7,251-250[AILt];x-x,244-244[BULt]	(((((((((.(((((..(((((.&.)))))-.)))))-)))))))))	UGUUUUAUACGCAAUUCGUAAUA&AAUUAC-UAUUGC-UAUAAAACA	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN3210_c0_g1_247_TPlot.pdf
TRINITY_DN3210_c0_g1:557	si_a502	TRINITY_DN3210_c0_g1	545	566	557	-32.10	-22.30	0.694704049844237	5.5	1-13,566-554;14-17,552-549;20-21,546-545	x-x,553-553[BULt];18-19,548-547[SIL]	((..((((.(((((((((((((&)))))))))))))-))))..))	AUUACAGGUGAAGACGGGAAAC&GUUUUUCGUCUUC-CUUGGAAU	3	0.999998071001669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3210_c0_g1_557_TPlot.pdf
TRINITY_DN3210_c0_g1:561	si_a498	TRINITY_DN3210_c0_g1	549	570	561	-33.50	-22.10	0.659701492537313	10.5	5-17,566-554;18-21,552-549	1-4,570-567[UP5];x-x,553-553[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	CAGGUGAAGACGGGAAACCAAA&UGUCGUUUUUCGUCUUC-CUUG	4	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3210_c0_g1_561_TPlot.pdf
TRINITY_DN3211_c0_g1:5435	si_a300	TRINITY_DN3211_c0_g1	5424	5444	5435	-28.20	-18.40	0.652482269503546	13.5	6-18,5439-5427	1-5,5444-5440[UP5];19-21,5426-5424[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUGCCGGGUGAAUCUUCAAAU&UAAAAAAGAUUCGCUUGGAUU	4	0.999949203849064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN3211_c0_g1_5435_TPlot.pdf
TRINITY_DN3211_c0_g1:5436	si_a299	TRINITY_DN3211_c0_g1	5425	5445	5436	-28.30	-18.40	0.65017667844523	14.5	7-19,5439-5427	1-6,5445-5440[UP5];20-21,5426-5425[UP3]	..(((((((((((((......&......)))))))))))))..	UGCCGGGUGAAUCUUCAAAUG&UUAAAAAAGAUUCGCUUGGAU	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN3211_c0_g1_5436_TPlot.pdf
TRINITY_DN3211_c0_g1:5437	si_a298	TRINITY_DN3211_c0_g1	5426	5446	5437	-28.10	-18.40	0.654804270462633	15.5	8-20,5439-5427	1-7,5446-5440[UP5];21-21,5426-5426[UP3]	.(((((((((((((.......&.......))))))))))))).	GCCGGGUGAAUCUUCAAAUGA&UUUAAAAAAGAUUCGCUUGGA	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN3211_c0_g1_5437_TPlot.pdf
TRINITY_DN3211_c0_g1:5532	si_s579	TRINITY_DN3211_c0_g1	5521	5542	5532	-26.70	-17.80	0.666666666666667	8.5	1-2,5542-5541;5-16,5537-5526;18-21,5524-5521	3-4,5540-5538[AILt];17-17,5525-5525[SIL]	((((.((((((((((((...((&))-..)))))))))))).))))	UGUCGAUGAUUUUUUUGGUGCC&GG-AAUAAAAAAAUCAUGGAUA	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN3211_c0_g1_5532_TPlot.pdf
TRINITY_DN3211_c0_g1:5727	si_a657	TRINITY_DN3211_c0_g1	5715	5737	5727	-33.80	-22.40	0.662721893491124	9	1-6,5737-5732;7-10,5730-5727;11-19,5725-5717	x-x,5731-5731[BULt];x-x,5726-5726[BULt];20-21,5716-5715[UP3]	..(((((((((.((((.((((((&))))))-))))-)))))))))..	UGCAGUGGGCGUUUUCUCUGAUA&UAUCGG-GAAA-UGCCUAUUGAU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN3211_c0_g1_5727_TPlot.pdf
TRINITY_DN3211_c0_g1:5728	si_a656	TRINITY_DN3211_c0_g1	5716	5738	5728	-33.80	-22.40	0.662721893491124	9	2-7,5737-5732;8-11,5730-5727;12-20,5725-5717	1-1,5738-5738[UP5];x-x,5731-5731[BULt];x-x,5726-5726[BULt];21-21,5716-5716[UP3]	.(((((((((.((((.((((((.&.))))))-))))-))))))))).	GCAGUGGGCGUUUUCUCUGAUAA&AUAUCGG-GAAA-UGCCUAUUGA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN3211_c0_g1_5728_TPlot.pdf
TRINITY_DN3211_c0_g1:5729	si_a655	TRINITY_DN3211_c0_g1	5717	5739	5729	-33.20	-22.20	0.668674698795181	9.5	3-8,5737-5732;9-12,5730-5727;13-21,5725-5717	1-2,5739-5738[UP5];x-x,5731-5731[BULt];x-x,5726-5726[BULt]	(((((((((.((((.((((((..&..))))))-))))-)))))))))	CAGUGGGCGUUUUCUCUGAUAAG&UAUAUCGG-GAAA-UGCCUAUUG	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a655_TRINITY_DN3211_c0_g1_5729_TPlot.pdf
TRINITY_DN3211_c0_g1:6421	si_s272	TRINITY_DN3211_c0_g1	6408	6430	6421	-27.10	-18.90	0.697416974169742	9.5	5-15,6426-6416;16-21,6413-6408	1-4,6430-6427[UP5];x-x,6415-6414[BULt]	((((((..(((((((((((....&....)))))))))))--))))))	GUGUAUUUUAUGUCGAUUUAUGG&AAAAAAAUCGACAUA--AUACGC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s272_TRINITY_DN3211_c0_g1_6421_TPlot.pdf
TRINITY_DN32126_c0_g1:170	si_s565	TRINITY_DN32126_c0_g1	159	179	170	-31.10	-21.80	0.70096463022508	8.5	1-12,179-168;14-16,166-164	13-13,167-167[SIL];17-21,163-159[UP3]	.....(((.((((((((((((&)))))))))))).))).....	AUACCCCUAGUCCCGAAGGUG&UAUUUUCGGGACAAGGAAUAA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s565_TRINITY_DN32126_c0_g1_170_TPlot.pdf
TRINITY_DN3212_c0_g1:1055	si_a499	TRINITY_DN3212_c0_g1	1045	1069	1055	-35.20	-23.80	0.676136363636364	16	1-8,1069-1062;9-17,1056-1048;20-21,1046-1045	x-x,1061-1057[BULt];18-19,1047-1047[AILq]	((.-(((((((((.....((((((((&))))))))-----)))))))))..))	CCU-GGAAGGCGAUGAAGGGGACGAC&GUCGUUUU-----UCGUCUUCCUUGG	2	0.999985827335772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3212_c0_g1_1055_TPlot.pdf
TRINITY_DN3212_c0_g1:1056	si_a498	TRINITY_DN3212_c0_g1	1045	1070	1056	-33.50	-22.30	0.665671641791045	17.5	2-9,1069-1062;10-18,1056-1048	1-1,1070-1070[UP5];x-x,1061-1057[BULt];19-21,1047-1045[UP3]	...(((((((((.....((((((((.&.))))))))-----)))))))))...	CCUGGAAGGCGAUGAAGGGGACGACU&UGUCGUUUU-----UCGUCUUCCUUG	3	0.999999999991466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3212_c0_g1_1056_TPlot.pdf
TRINITY_DN3212_c0_g1:1062	si_a497	TRINITY_DN3212_c0_g1	1046	1071	1062	-32.00	-22.30	0.696875	18.5	3-10,1069-1062;11-19,1056-1048	1-2,1071-1070[UP5];x-x,1061-1057[BULt];20-21,1047-1046[UP3]	..(((((((((.....((((((((..&..))))))))-----)))))))))..	CUGGAAGGCGAUGAAGGGGACGACUC&AUGUCGUUUU-----UCGUCUUCCUU	3	0.999999971382081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3212_c0_g1_1062_TPlot.pdf
TRINITY_DN3212_c0_g1:1063	si_a496	TRINITY_DN3212_c0_g1	1047	1072	1063	-32.40	-22.30	0.688271604938272	19.5	4-11,1069-1062;12-20,1056-1048	1-3,1072-1070[UP5];x-x,1061-1057[BULt];21-21,1047-1047[UP3]	.(((((((((.....((((((((...&...))))))))-----))))))))).	UGGAAGGCGAUGAAGGGGACGACUCA&UAUGUCGUUUU-----UCGUCUUCCU	2	0.999871711273646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3212_c0_g1_1063_TPlot.pdf
TRINITY_DN3212_c0_g1:1064	si_a495	TRINITY_DN3212_c0_g1	1048	1073	1064	-31.90	-21.90	0.686520376175549	20.5	5-12,1069-1062;13-21,1056-1048	1-4,1073-1070[UP5];x-x,1061-1057[BULt]	(((((((((.....((((((((....&....))))))))-----)))))))))	GGAAGGCGAUGAAGGGGACGACUCAG&AUAUGUCGUUUU-----UCGUCUUCC	3	0.99999280884472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN3212_c0_g1_1064_TPlot.pdf
TRINITY_DN3212_c0_g1:584	si_s42	TRINITY_DN3212_c0_g1	573	594	584	-24.90	-16.50	0.662650602409639	7.5	1-6,594-589;7-17,587-577	x-x,588-588[BULt];18-21,576-573[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UAACGAUCCAAUUGUAUAAAGA&UCUUUA-AUAAUUGGAUUUCAA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN3212_c0_g1_584_TPlot.pdf
TRINITY_DN3212_c0_g1:585	si_s41	TRINITY_DN3212_c0_g1	574	595	585	-25.00	-16.50	0.66	7.5	2-7,594-589;8-18,587-577	1-1,595-595[UP5];x-x,588-588[BULt];19-21,576-574[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	AACGAUCCAAUUGUAUAAAGAA&AUCUUUA-AUAAUUGGAUUUCA	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN3212_c0_g1_585_TPlot.pdf
TRINITY_DN3212_c0_g1:586	si_s40	TRINITY_DN3212_c0_g1	575	596	586	-24.30	-16.50	0.679012345679012	8.5	3-8,594-589;9-19,587-577	1-2,596-595[UP5];x-x,588-588[BULt];20-21,576-575[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	ACGAUCCAAUUGUAUAAAGAAA&AAUCUUUA-AUAAUUGGAUUUC	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN3212_c0_g1_586_TPlot.pdf
TRINITY_DN3212_c0_g1:634	si_a183	TRINITY_DN3212_c0_g1	623	643	634	-30.10	-20.70	0.687707641196013	12.5	7-21,637-623	1-6,643-638[UP5]	(((((((((((((((......&......)))))))))))))))	AAUAGGGAAAGAUGUAUUGAA&UAGAUAAUAUCUUUCCCUGUU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN3212_c0_g1_634_TPlot.pdf
TRINITY_DN3212_c0_g1:881	si_s803	TRINITY_DN3212_c0_g1	870	890	881	-26.00	-18.10	0.696153846153846	13.5	5-18,886-873	1-4,890-887[UP5];19-21,872-870[UP3]	...((((((((((((((....&....))))))))))))))...	UUCAGGUGAUGAAGGUGUAGG&AUUUUAUCUUCGUUACCUUUU	3	0.999999625720291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3212_c0_g1_881_TPlot.pdf
TRINITY_DN3212_c0_g1:885	si_s799	TRINITY_DN3212_c0_g1	874	893	885	-30.00	-20.62	0.687333333333333	12.5	1-4,893-890;9-21,886-874	5-8,889-887[AILq]	(((((((((((((...-((((&))))....)))))))))))))	GGUGAUGAAGGUGUAG-GCGG&UCGUAUUUUAUCUUCGUUACC	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN3212_c0_g1_885_TPlot.pdf
TRINITY_DN32136_c0_g1:242	si_a512	TRINITY_DN32136_c0_g1	231	253	242	-37.80	-25.30	0.669312169312169	9.5	1-9,253-245;11-18,241-234;20-20,232-232	10-10,244-242[AILt];19-19,233-233[SIL];21-21,231-231[UP3]	.(.((((((((...(((((((((&)))))))))--.)))))))).).	GUGGCCUUACAGAAUCCAAGGGA&UUCCUUGGA--AUGUAAGGCGGA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN32136_c0_g1_242_TPlot.pdf
TRINITY_DN32136_c0_g1:274	si_a786	TRINITY_DN32136_c0_g1	264	283	274	-26.60	-19.10	0.718045112781955	5.5	1-14,283-270;18-21,267-264	15-17,269-268[AILq]	((((..-((((((((((((((&))))))))))))))...))))	GGAGCA-AGAAAAAUGGAGGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN32136_c0_g1_274_TPlot.pdf
TRINITY_DN32136_c0_g1:275	si_a785	TRINITY_DN32136_c0_g1	264	284	275	-25.90	-20.30	0.783783783783784	5	1-15,284-270;18-21,267-264	16-17,269-268[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	GGAGCAAGAAAAAUGGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN32136_c0_g1_275_TPlot.pdf
TRINITY_DN32136_c0_g1:276	si_a784	TRINITY_DN32136_c0_g1	265	285	276	-24.70	-19.90	0.805668016194332	8	2-16,284-270	1-1,285-285[UP5];17-21,269-265[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAGCAAGAAAAAUGGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN32136_c0_g1_276_TPlot.pdf
TRINITY_DN32136_c0_g1:277	si_a783	TRINITY_DN32136_c0_g1	266	286	277	-24.70	-19.90	0.805668016194332	9	3-17,284-270	1-2,286-285[UP5];18-21,269-266[UP3]	....(((((((((((((((..&..)))))))))))))))....	AGCAAGAAAAAUGGAGGAGGA&AACUCUUCUAUUUUUCUAUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN32136_c0_g1_277_TPlot.pdf
TRINITY_DN32143_c0_g3:76	si_s189	TRINITY_DN32143_c0_g3	64	85	76	-27.90	-18.60	0.666666666666667	7	2-7,84-79;9-17,77-69;19-21,66-64	1-1,85-85[UP5];8-8,78-78[SIL];18-18,68-67[AILt]	(((..(((((((((.((((((.&.)))))).)))))))))-.)))	CAUGACCAAAGUAAACGUUGCA&AGUAACGAUUAUUUUGG-AAUG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN32143_c0_g3_76_TPlot.pdf
TRINITY_DN3214_c0_g1:462	si_a323	TRINITY_DN3214_c0_g1	449	471	462	-26.80	-18.00	0.671641791044776	8.5	1-12,471-460;14-17,457-454;18-20,452-450	13-13,459-458[AILt];x-x,453-453[BULt];21-21,449-449[UP3]	.(((.((((..((((((((((((&))))))))))))-.))))-))).	CAGGCAAUGUUGGGAAUCAUGGA&UCCAUGAUUUUU-UUAUU-CCUU	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3214_c0_g1_462_TPlot.pdf
TRINITY_DN3214_c0_g1:463	si_a322	TRINITY_DN3214_c0_g1	450	472	463	-27.00	-18.00	0.666666666666667	7	2-13,471-460;15-18,457-454;19-21,452-450	1-1,472-472[UP5];14-14,459-458[AILt];x-x,453-453[BULt]	(((.((((..((((((((((((.&.))))))))))))-.))))-)))	AGGCAAUGUUGGGAAUCAUGGAA&AUCCAUGAUUUUU-UUAUU-CCU	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN3214_c0_g1_463_TPlot.pdf
TRINITY_DN3214_c0_g1:693	si_s891	TRINITY_DN3214_c0_g1	683	702	693	-29.60	-19.60	0.662162162162162	6.5	1-4,702-699;6-14,697-689;16-19,688-685	5-5,698-698[SIL];15-15,x-x[BULq];20-21,684-683[UP3]	..((((-(((((((((.((((&)))).))))))))).))))..	UCGGAG-GAAAGCCUGAUUAU&AUAAAUAGGCUUUCUCUUCAA	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN3214_c0_g1_693_TPlot.pdf
TRINITY_DN3214_c0_g1:695	si_s889	TRINITY_DN3214_c0_g1	685	704	695	-28.80	-19.50	0.677083333333333	7.5	3-6,702-699;8-16,697-689;18-21,688-685	1-2,704-703[UP5];7-7,698-698[SIL];17-17,x-x[BULq]	((((-(((((((((.((((..&..)))).))))))))).))))	GGAG-GAAAGCCUGAUUAUGA&AAAUAAAUAGGCUUUCUCUUC	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3214_c0_g1_695_TPlot.pdf
TRINITY_DN3214_c0_g1:923	si_a141	TRINITY_DN3214_c0_g1	912	932	923	-23.80	-15.90	0.668067226890756	13.5	8-21,925-912	1-7,932-926[UP5]	((((((((((((((.......&.......))))))))))))))	UAAAAUAACAACGAAAAAUAA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999596784254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3214_c0_g1_923_TPlot.pdf
TRINITY_DN3214_c0_g1:96	si_s38	TRINITY_DN3214_c0_g1	85	104	96	-22.70	-15.40	0.6784140969163	6.5	1-4,104-101;6-9,100-97;11-21,95-85	5-5,x-x[BULq];10-10,96-96[SIL]	(((((((((((.((((-((((&)))).)))).)))))))))))	GAUCCAAUUGUAGAAG-UUUA&UAAAUCUUUAAUAAUUGGAUU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN3214_c0_g1_96_TPlot.pdf
TRINITY_DN32164_c0_g1:44	si_a362	TRINITY_DN32164_c0_g1	33	51	44	-28.00	-19.00	0.678571428571429	8.5	1-6,51-46;9-20,45-34	7-8,x-x[BULq];21-21,33-33[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	CUUUUGGUCCGAU--GGAUGG&CUAUUUUGAUCGGAUCAAAAA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN32164_c0_g1_44_TPlot.pdf
TRINITY_DN3217_c0_g1:129	si_a499	TRINITY_DN3217_c0_g1	104	138	129	-35.20	-24.30	0.690340909090909	29.5	1-11,138-128;12-21,113-104	x-x,127-114[BULt]	((((((((((..............(((((((((((&)))))))))))--------------))))))))))	CCAAGGAGGAAAGCACAACAAACUCGAAAAAUGAC&GUCGUUUUUCG--------------UCUUCCUUGG	4	0.999999034889186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3217_c0_g1_129_TPlot.pdf
TRINITY_DN3217_c0_g1:162	si_s312	TRINITY_DN3217_c0_g1	151	171	162	-29.00	-20.60	0.710344827586207	8	2-17,170-155;19-19,153-153	1-1,171-171[UP5];18-18,154-154[SIL];20-21,152-151[UP3]	..(.((((((((((((((((.&.)))))))))))))))).)..	AUGGAGGAAGGAUAGGGUUUA&AAAAUUCUGUCCUUCUUGUUA	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3217_c0_g1_162_TPlot.pdf
TRINITY_DN3217_c0_g1:492	si_a479	TRINITY_DN3217_c0_g1	481	500	492	-23.00	-15.00	0.652173913043478	6	1-8,500-493;10-18,492-484	9-9,x-x[BULq];19-21,483-481[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AGCAUUCUAUAU-ACAAUGAU&AUUAUUGUUAUAUAGAAUAUG	2	0.99060244577417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN3217_c0_g1_492_TPlot.pdf
TRINITY_DN3217_c0_g1:494	si_a476	TRINITY_DN3217_c0_g1	484	502	494	-22.90	-15.60	0.681222707423581	5	1-3,502-500;5-11,499-493;13-21,492-484	4-4,x-x[BULq];12-12,x-x[BULq]	(((((((((-(((((((-(((&))).))))))).)))))))))	AUUCUAUAU-ACAAUGA-UAC&GUAAUUAUUGUUAUAUAGAAU	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN3217_c0_g1_494_TPlot.pdf
TRINITY_DN3217_c0_g1:495	si_a475	TRINITY_DN3217_c0_g1	485	503	495	-23.50	-15.30	0.651063829787234	4	1-4,503-500;6-12,499-493;14-21,492-485	5-5,x-x[BULq];13-13,x-x[BULq]	((((((((-(((((((-((((&)))).))))))).))))))))	UUCUAUAU-ACAAUGA-UACA&UGUAAUUAUUGUUAUAUAGAA	3	0.999761340034339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN3217_c0_g1_495_TPlot.pdf
TRINITY_DN3217_c0_g1:496	si_a474	TRINITY_DN3217_c0_g1	486	504	496	-23.60	-15.50	0.656779661016949	4	1-5,504-500;7-13,499-493;15-21,492-486	6-6,x-x[BULq];14-14,x-x[BULq]	(((((((-(((((((-(((((&))))).))))))).)))))))	UCUAUAU-ACAAUGA-UACAU&AUGUAAUUAUUGUUAUAUAGA	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN3217_c0_g1_496_TPlot.pdf
TRINITY_DN32182_c0_g1:327	si_a403	TRINITY_DN32182_c0_g1	316	336	327	-22.00	-15.20	0.690909090909091	13.5	6-21,331-316	1-5,336-332[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGUGUGAACGGAACAGAUAA&AGAAUUGUUUUGUUUAUAUUU	0	0.34508596005206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN32182_c0_g1_327_TPlot.pdf
TRINITY_DN3219_c0_g1:1119	si_s899	TRINITY_DN3219_c0_g1	1108	1129	1119	-28.30	-20.20	0.713780918727915	7	1-9,1129-1121;10-12,1119-1117;14-19,1115-1110	x-x,1120-1120[BULt];13-13,1116-1116[SIL];20-21,1109-1108[UP3]	..((((((.(((.(((((((((&)))))))))-))).))))))..	GUUUGAAACUGACGGAGAAGGC&GCUUUCUCU-UCAAUUUCAAUU	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3219_c0_g1_1119_TPlot.pdf
TRINITY_DN321_c0_g1:1096	si_s68	TRINITY_DN321_c0_g1	1085	1105	1096	-23.10	-16.10	0.696969696969697	9	5-21,1101-1085	1-4,1105-1102[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAAAGGAAAUGGAACAGA&CAACUUCUAUUUUUUUUCUUU	4	0.999999999998878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN321_c0_g1_1096_TPlot.pdf
TRINITY_DN321_c0_g1:1757	si_a406	TRINITY_DN321_c0_g1	1746	1766	1757	-19.80	-17.00	0.858585858585859	7.5	2-18,1765-1749	1-1,1766-1766[UP5];19-21,1748-1746[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CACAGAUAUGAACGAAGCAAA&AUUGUUUUGUUUAUAUUUAAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN321_c0_g1_1757_TPlot.pdf
TRINITY_DN321_c0_g1:1762	si_a401	TRINITY_DN321_c0_g1	1751	1771	1762	-22.60	-15.00	0.663716814159292	13	7-21,1765-1751	1-6,1771-1766[UP5]	(((((((((((((((......&......)))))))))))))))	AUAUGAACGAAGCAAAUAUAA&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999754717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN321_c0_g1_1762_TPlot.pdf
TRINITY_DN321_c0_g1:4581	si_a551	TRINITY_DN321_c0_g1	4570	4590	4581	-31.60	-21.90	0.693037974683544	11	5-20,4586-4571	1-4,4590-4587[UP5];21-21,4570-4570[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGGGGGGUAGAGAAAUGUAAA&AAUCUAUUUCUUUAUCUCCCC	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN321_c0_g1_4581_TPlot.pdf
TRINITY_DN321_c0_g1:4860	si_a640	TRINITY_DN321_c0_g1	4850	4869	4860	-24.10	-16.00	0.663900414937759	8	1-13,4869-4857;19-21,4852-4850	14-18,4856-4853[AILq]	(((....-(((((((((((((&))))))))))))).....)))	GAUCAAG-ACUCGAAAGAGUC&GAUUUUUUUGAGUAAUAUAUC	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN321_c0_g1_4860_TPlot.pdf
TRINITY_DN321_c0_g1:4987	si_s74	TRINITY_DN321_c0_g1	4970	4996	4987	-25.00	-17.00	0.68	16	2-10,4995-4987;11-21,4980-4970	1-1,4996-4996[UP5];x-x,4986-4981[BULt]	(((((((((((......(((((((((.&.)))))))))------)))))))))))	GGGAGGAAAGAUGGCCAAAAAGAGUAC&CUAUUUUUUU------UCUUUCCUUUC	2	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN321_c0_g1_4987_TPlot.pdf
TRINITY_DN321_c0_g1:850	si_a758	TRINITY_DN321_c0_g1	839	863	850	-34.00	-22.80	0.670588235294118	12	1-8,863-856;9-14,851-846;17-21,843-839	x-x,855-852[BULt];15-16,845-844[SIL]	(((((..((((((....((((((((&))))))))----))))))..)))))	CGGUCCCAAGCCCGGAAAAAGGAGG&CCUCCUUU----GGGUUUUUGAUUG	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN321_c0_g1_850_TPlot.pdf
TRINITY_DN321_c0_g2:1484	si_s69	TRINITY_DN321_c0_g2	1470	1493	1484	-23.40	-16.10	0.688034188034188	6.5	2-10,1492-1484;11-17,1481-1475;18-21,1473-1470	1-1,1493-1493[UP5];x-x,1483-1482[BULt];x-x,1474-1474[BULt]	((((.(((((((..(((((((((.&.)))))))))--)))))))-))))	GAAAUGAAAGAACUAAUAGAAGUA&AACUUCUAUU--UUUUUUC-UUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN321_c0_g2_1484_TPlot.pdf
TRINITY_DN321_c0_g2:1511	si_a320	TRINITY_DN321_c0_g2	1500	1521	1511	-24.40	-16.30	0.668032786885246	7	1-9,1521-1513;10-17,1511-1504	x-x,1512-1512[BULt];18-21,1503-1500[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AUUGAAAAAGAUACAUGGAUAA&UUAUCCAUG-AUUUUUUUAUUC	4	0.999999843083262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN321_c0_g2_1511_TPlot.pdf
TRINITY_DN321_c0_g2:2019	si_a426	TRINITY_DN321_c0_g2	2009	2028	2019	-31.80	-21.70	0.682389937106918	5.5	2-12,2027-2017;15-20,2015-2010	1-1,2028-2028[UP5];13-14,2016-2016[AILq];21-21,2009-2009[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	ACCAGCGU-UCCUAUGUUUAA&AUAAAUAUAGGAUCCGUUGGA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN321_c0_g2_2019_TPlot.pdf
TRINITY_DN321_c0_g2:2925	si_a724	TRINITY_DN321_c0_g2	2913	2934	2925	-36.70	-24.10	0.656675749318801	12	7-13,2928-2922;14-21,2920-2913	1-6,2934-2929[UP5];x-x,2921-2921[BULt]	((((((((.(((((((......&......)))))))-))))))))	GUAAAGAUAGCCCGAGAUAAGU&UCGUUACUCGGGC-AUCUUUAC	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN321_c0_g2_2925_TPlot.pdf
TRINITY_DN321_c0_g2:2945	si_a501	TRINITY_DN321_c0_g2	2935	2954	2945	-33.50	-21.80	0.650746268656716	8.5	3-16,2952-2939;18-19,2938-2937	1-2,2954-2953[UP5];17-17,x-x[BULq];20-21,2936-2935[UP3]	..((-((((((((((((((..&..)))))))))))))).))..	CACC-GGGAGGACGAAGAAGU&CGUUUUUCGUCUUCCUUGGAA	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN321_c0_g2_2945_TPlot.pdf
TRINITY_DN321_c0_g2:2947	si_a499	TRINITY_DN321_c0_g2	2937	2961	2947	-35.20	-23.00	0.653409090909091	15	1-3,2961-2959;5-5,2957-2957;6-18,2951-2939;20-21,2938-2937	4-4,2958-2958[SIL];x-x,2956-2952[BULt];19-19,x-x[BULq]	((-(((((((((((((.....(.(((&))).)-----))))))))))))).))	CC-GGGAGGACGAAGAAGUGUAGGAC&GUCGU-----UUUUCGUCUUCCUUGG	3	0.99999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN321_c0_g2_2947_TPlot.pdf
TRINITY_DN321_c0_g3:493	si_s568	TRINITY_DN321_c0_g3	482	502	493	-30.60	-20.70	0.676470588235294	7.5	2-16,501-487	1-1,502-502[UP5];17-21,486-482[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCCAGAUUUCUUGUUCCGAAU&UUUCGGGACAAGGAAUAAAAA	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN321_c0_g3_493_TPlot.pdf
TRINITY_DN321_c1_g1:256	si_s38	TRINITY_DN321_c1_g1	246	265	256	-22.70	-15.70	0.691629955947136	6.5	1-13,265-253;15-18,252-249	14-14,x-x[BULq];19-21,248-246[UP3]	...((((-(((((((((((((&))))))))))))).))))...	UAGCCGA-UAUUGAGGAUUUA&UAAAUCUUUAAUAAUUGGAUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN321_c1_g1_256_TPlot.pdf
TRINITY_DN321_c1_g1:707	si_s606	TRINITY_DN321_c1_g1	696	716	707	-28.20	-19.50	0.691489361702128	8.5	5-21,712-696	1-4,716-713[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGGAUUUGAAAAGGAUUAACC&AGCGAAUCUUUUUUAAAUCCA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN321_c1_g1_707_TPlot.pdf
TRINITY_DN321_c1_g1:708	si_s605	TRINITY_DN321_c1_g1	697	725	708	-27.50	-18.10	0.658181818181818	19.5	1-4,725-722;6-6,720-720;7-21,711-697	5-5,721-721[SIL];x-x,719-712[BULt]	(((((((((((((((........(.((((&)))).)--------)))))))))))))))	GGAUUUGAAAAGGAUUAACCAAUUGGCUU&AAGCGA--------AUCUUUUUUAAAUCC	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN321_c1_g1_708_TPlot.pdf
TRINITY_DN321_c1_g1:971	si_s8	TRINITY_DN321_c1_g1	960	980	971	-21.30	-15.40	0.723004694835681	12.5	6-21,975-960	1-5,980-976[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUGUGGUGAUGAUGAAGAAG&AUUACUUAUUAUUACUAUAUU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN321_c1_g1_971_TPlot.pdf
TRINITY_DN321_c1_g1:972	si_s7	TRINITY_DN321_c1_g1	961	981	972	-21.70	-14.50	0.668202764976959	14.5	7-21,975-961	1-6,981-976[UP5]	(((((((((((((((......&......)))))))))))))))	AUGUGGUGAUGAUGAAGAAGA&UAUUACUUAUUAUUACUAUAU	4	0.999993281469884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN321_c1_g1_972_TPlot.pdf
TRINITY_DN3220_c0_g1:1684	si_s898	TRINITY_DN3220_c0_g1	1673	1694	1684	-30.70	-21.30	0.693811074918567	8.5	1-4,1694-1691;5-16,1689-1678	x-x,1690-1690[BULt];17-21,1677-1673[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	GUAAUGAUUGAAGAGGACAGCC&GGCU-UUCUCUUCAAUUUCAAU	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN3220_c0_g1_1684_TPlot.pdf
TRINITY_DN3221_c0_g1:324	si_a241	TRINITY_DN3221_c0_g1	313	332	324	-36.70	-24.50	0.667574931880109	9	2-4,331-329;7-8,327-326;10-21,324-313	1-1,332-332[UP5];5-6,328-328[AILq];9-9,325-325[SIL]	((((((((((((.((.-(((.&.)))..)).))))))))))))	CAGUUGGGGGAUGGGC-UGAA&AUCAAUUCGAUCCCCCGAUUG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a241_TRINITY_DN3221_c0_g1_324_TPlot.pdf
TRINITY_DN3223_c0_g1:1897	si_s64	TRINITY_DN3223_c0_g1	1887	1905	1897	-24.10	-16.30	0.676348547717842	6.5	1-9,1905-1897;12-21,1896-1887	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GGAGAAAAUA--AGUUGCUGA&UUAGCAACUUCUAUUUUUUUU	4	0.999999995936609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3223_c0_g1_1897_TPlot.pdf
TRINITY_DN3223_c0_g1:2218	si_a193	TRINITY_DN3223_c0_g1	2207	2227	2218	-30.90	-21.50	0.6957928802589	10	1-12,2227-2216	13-21,2215-2207[UP3]	.........((((((((((((&)))))))))))).........	CGGUGUCACGAACAGGGAGAG&CUUUCCCUGUUCACUAAUAAA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN3223_c0_g1_2218_TPlot.pdf
TRINITY_DN3223_c0_g1:2254	si_s83	TRINITY_DN3223_c0_g1	2243	2263	2254	-30.90	-20.90	0.676375404530744	7	1-5,2263-2259;8-20,2256-2244	6-7,2258-2257[SIL];21-21,2243-2243[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	CAAGAAGAAGGAGGAUAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3223_c0_g1_2254_TPlot.pdf
TRINITY_DN3223_c0_g1:642	si_s72	TRINITY_DN3223_c0_g1	631	651	642	-24.10	-15.80	0.655601659751037	8.5	1-4,651-648;7-10,645-642;12-20,640-632	5-6,647-646[SIL];11-11,641-641[SIL];21-21,631-631[UP3]	.(((((((((.((((..((((&))))..)))).))))))))).	CGGGAAAGAGUAAAAUCAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3223_c0_g1_642_TPlot.pdf
TRINITY_DN3223_c0_g1:643	si_s71	TRINITY_DN3223_c0_g1	632	652	643	-25.70	-18.70	0.727626459143969	7	1-5,652-648;8-11,645-642;13-21,640-632	6-7,647-646[SIL];12-12,641-641[SIL]	(((((((((.((((..(((((&)))))..)))).)))))))))	GGGAAAGAGUAAAAUCAGAAG&CUUCUAUUUUUUUUCUUUCCU	4	0.999999999187863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3223_c0_g1_643_TPlot.pdf
TRINITY_DN3223_c0_g1:909	si_a756	TRINITY_DN3223_c0_g1	897	918	909	-33.10	-22.10	0.667673716012085	8	2-11,917-908;12-15,906-903;17-19,901-899	1-1,918-918[UP5];x-x,907-907[BULt];16-16,902-902[SIL];20-21,898-897[UP3]	..(((.((((.((((((((((.&.))))))))))-)))).)))..	ACCAAUGAUCUCGAAGGAGGUG&AACCUCCUUUG-GGUUUUUGAU	4	0.999999904387963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3223_c0_g1_909_TPlot.pdf
TRINITY_DN3224_c0_g1:111	si_a551	TRINITY_DN3224_c0_g1	102	120	111	-31.60	-21.70	0.686708860759494	5	2-12,119-109;15-20,108-103	1-1,120-120[UP5];13-14,x-x[BULq];21-21,102-102[UP3]	.((((((--(((((((((((.&.)))))))))))..)))))).	AGGGAGA--AAGAAAUGGAUC&AAUCUAUUUCUUUAUCUCCCC	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3224_c0_g1_111_TPlot.pdf
TRINITY_DN3224_c0_g1:4958	si_s76	TRINITY_DN3224_c0_g1	4947	4967	4958	-23.60	-16.50	0.699152542372881	15	7-19,4961-4949	1-6,4967-4962[UP5];20-21,4948-4947[UP3]	..(((((((((((((......&......)))))))))))))..	CUGAAAGGAAAGGGACUCUAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3224_c0_g1_4958_TPlot.pdf
TRINITY_DN3224_c0_g1:5041	si_a637	TRINITY_DN3224_c0_g1	5031	5050	5041	-25.80	-17.70	0.686046511627907	10	1-11,5050-5040;13-16,5039-5036	12-12,x-x[BULq];17-21,5035-5031[UP3]	.....((((-(((((((((((&))))))))))).)))).....	GGCGGACUC-GAGAAGUCGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.999996230722476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN3224_c0_g1_5041_TPlot.pdf
TRINITY_DN3224_c0_g1:5042	si_a636	TRINITY_DN3224_c0_g1	5032	5051	5042	-26.30	-18.70	0.711026615969582	8	1-12,5051-5040;14-17,5039-5036	13-13,x-x[BULq];18-21,5035-5032[UP3]	....((((-((((((((((((&)))))))))))).))))....	GCGGACUC-GAGAAGUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN3224_c0_g1_5042_TPlot.pdf
TRINITY_DN3224_c0_g1:5045	si_a633	TRINITY_DN3224_c0_g1	5035	5054	5045	-26.40	-18.70	0.708333333333333	9	4-15,5051-5040;17-20,5039-5036	1-3,5054-5052[UP5];16-16,x-x[BULq];21-21,5035-5035[UP3]	.((((-((((((((((((...&...)))))))))))).)))).	GACUC-GAGAAGUCGACAGAC&UUAUGUCGAUUUUUUUGAGUA	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3224_c0_g1_5045_TPlot.pdf
TRINITY_DN3224_c0_g1:5148	si_a535	TRINITY_DN3224_c0_g1	5137	5157	5148	-39.60	-26.10	0.659090909090909	9	2-13,5156-5145	1-1,5157-5157[UP5];14-21,5144-5137[UP3]	........((((((((((((.&.))))))))))))........	UCUUCAUCCCGAUCGCUCGCA&CGCGAGCGAUCGGUUCAAUCU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN3224_c0_g1_5148_TPlot.pdf
TRINITY_DN3224_c0_g1:5149	si_a534	TRINITY_DN3224_c0_g1	5138	5158	5149	-39.70	-26.10	0.657430730478589	10	3-14,5156-5145	1-2,5158-5157[UP5];15-21,5144-5138[UP3]	.......((((((((((((..&..)))))))))))).......	CUUCAUCCCGAUCGCUCGCAC&ACGCGAGCGAUCGGUUCAAUC	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a534_TRINITY_DN3224_c0_g1_5149_TPlot.pdf
TRINITY_DN3224_c0_g1:5151	si_a532	TRINITY_DN3224_c0_g1	5140	5160	5151	-40.10	-26.10	0.650872817955112	12	5-16,5156-5145	1-4,5160-5157[UP5];17-21,5144-5140[UP3]	.....((((((((((((....&....)))))))))))).....	UCAUCCCGAUCGCUCGCACAA&ACACGCGAGCGAUCGGUUCAA	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN3224_c0_g1_5151_TPlot.pdf
TRINITY_DN3225_c0_g1:11054	si_a505	TRINITY_DN3225_c0_g1	11043	11063	11054	-33.30	-21.80	0.654654654654655	8	1-13,11063-11051;15-15,11049-11049;18-20,11046-11044	14-14,11050-11050[SIL];16-17,11048-11047[SIL];21-21,11043-11043[UP3]	.(((..(.(((((((((((((&))))))))))))).)..))).	AGCACACGAGGGAAGGCGGAG&UUUCGUCUUCCUUGGAAUGUA	4	0.999998279742994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN3225_c0_g1_11054_TPlot.pdf
TRINITY_DN3225_c0_g1:11058	si_a501	TRINITY_DN3225_c0_g1	11047	11067	11058	-33.50	-21.90	0.653731343283582	10.5	2-3,11066-11065;5-17,11063-11051;19-19,11049-11049	1-1,11067-11067[UP5];4-4,11064-11064[SIL];18-18,11050-11050[SIL];20-21,11048-11047[UP3]	..(.(((((((((((((.((.&.)).))))))))))))).)..	CACGAGGGAAGGCGGAGUGCU&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999999768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3225_c0_g1_11058_TPlot.pdf
TRINITY_DN3225_c0_g1:1108	si_a59	TRINITY_DN3225_c0_g1	1097	1118	1108	-34.00	-23.80	0.7	8.5	2-7,1117-1112;8-17,1110-1101	1-1,1118-1118[UP5];x-x,1111-1111[BULt];18-21,1100-1097[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	GUAGGGAAGAAGCGAAGUCGGA&GUCGACU-CGCUUCUUUCAAAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN3225_c0_g1_1108_TPlot.pdf
TRINITY_DN3225_c0_g1:13172	si_a547	TRINITY_DN3225_c0_g1	13161	13184	13172	-26.90	-18.20	0.676579925650558	11.5	1-5,13184-13180;6-19,13176-13163	x-x,13179-13177[BULt];20-21,13162-13161[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	CAAUGGAGGGAUAGAUGGAUGAGC&GUUCA---AUCUAUUUCUUUAUCU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN3225_c0_g1_13172_TPlot.pdf
TRINITY_DN3225_c0_g1:4491	si_a505	TRINITY_DN3225_c0_g1	4479	4501	4491	-33.30	-21.70	0.651651651651652	11.5	3-8,4499-4494;9-12,4492-4489;13-20,4487-4480	1-2,4501-4500[UP5];x-x,4493-4493[BULt];x-x,4488-4488[BULt];21-21,4479-4479[UP3]	.((((((((.((((.((((((..&..))))))-))))-)))))))).	AGCGUUCCGCAGGAUGGAUGACG&UUUCGUCU-UCCU-UGGAAUGUA	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN3225_c0_g1_4491_TPlot.pdf
TRINITY_DN3225_c0_g1:854	si_a151	TRINITY_DN3225_c0_g1	843	870	854	-28.90	-20.60	0.71280276816609	20	1-8,870-863;9-20,855-844	x-x,862-856[BULt];21-21,843-843[UP3]	.((((((((((((.......((((((((&))))))))-------)))))))))))).	UGAUUGACCUUGAACUCGAGGAUAGCGA&UUGUUGUU-------UUAAGGUCAAUCU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN3225_c0_g1_854_TPlot.pdf
TRINITY_DN3225_c0_g1:9683	si_a66	TRINITY_DN3225_c0_g1	9671	9692	9683	-26.70	-17.70	0.662921348314607	9.5	1-3,9692-9690;5-11,9688-9682;13-20,9679-9672	4-4,9689-9689[SIL];12-12,9681-9680[AILt];21-21,9671-9671[UP3]	.((((((((..(((((((.(((&))).)))))))-.)))))))).	CGAAGCGAUCAUGGAAGACGCG&CGCUUCUUUCA-AAUUGUUUUU	2	0.999999986344815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3225_c0_g1_9683_TPlot.pdf
TRINITY_DN3225_c0_g1:9685	si_s90	TRINITY_DN3225_c0_g1	9670	9697	9685	-35.30	-23.60	0.668555240793201	17	1-6,9697-9692;7-12,9688-9683;13-20,9678-9671	x-x,9691-9689[BULt];x-x,9682-9679[BULt];21-21,9670-9670[UP3]	.((((((((....((((((...((((((&))))))---))))))----)))))))).	UCGAAGCGAUCAUGGAAGACGCGGAAAG&CUUUCU---UCUUCU----UCGCUUCGG	4	0.999999999999836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3225_c0_g1_9685_TPlot.pdf
TRINITY_DN3225_c0_g1:9791	si_a473	TRINITY_DN3225_c0_g1	9780	9800	9791	-23.00	-15.60	0.678260869565217	10	1-5,9800-9796;8-19,9793-9782	6-7,9795-9794[SIL];20-21,9781-9780[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	UGGUGUGACGAUGAAGACAUG&UAUGUAAUUAUUGUUAUAUAG	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN3225_c0_g1_9791_TPlot.pdf
TRINITY_DN3225_c0_g1:9792	si_a472	TRINITY_DN3225_c0_g1	9781	9801	9792	-21.50	-15.60	0.725581395348837	10	2-6,9800-9796;9-20,9793-9782	1-1,9801-9801[UP5];7-8,9795-9794[SIL];21-21,9781-9781[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	GGUGUGACGAUGAAGACAUGG&AUAUGUAAUUAUUGUUAUAUA	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN3225_c0_g1_9792_TPlot.pdf
TRINITY_DN3225_c0_g1:9843	si_a311	TRINITY_DN3225_c0_g1	9829	9852	9843	-32.70	-21.52	0.658103975535168	13.5	1-11,9852-9842;14-18,9836-9832	12-13,9841-9837[AILt];19-21,9831-9829[UP3]	...(((((.....(((((((((((&)))))))))))---..)))))...	UGGCGUGGCUCUCAGAUCCAAGCG&CGCUUGGAUUU---AUCCAUGAUU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN3225_c0_g1_9843_TPlot.pdf
TRINITY_DN3225_c0_g1:9850	si_a304	TRINITY_DN3225_c0_g1	9839	9859	9850	-30.40	-25.30	0.832236842105263	7.5	3-18,9857-9842	1-2,9859-9858[UP5];19-21,9841-9839[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUCAGAUCCAAGCGAGUCUGA&AAAGAUUCGCUUGGAUUUAUC	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN3225_c0_g1_9850_TPlot.pdf
TRINITY_DN3225_c0_g1:9856	si_a298	TRINITY_DN3225_c0_g1	9845	9865	9856	-28.10	-22.10	0.786476868327402	16	9-21,9857-9845	1-8,9865-9858[UP5]	(((((((((((((........&........)))))))))))))	UCCAAGCGAGUCUGACGGACC&UUUAAAAAAGAUUCGCUUGGA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN3225_c0_g1_9856_TPlot.pdf
TRINITY_DN3227_c0_g1:1442	si_a503	TRINITY_DN3227_c0_g1	1431	1451	1442	-32.10	-23.60	0.735202492211838	12.5	7-21,1445-1431	1-6,1451-1446[UP5]	(((((((((((((((......&......)))))))))))))))	CAUUCCAGGGAAGAUUUACAA&UUUUUCGUCUUCCUUGGAAUG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN3227_c0_g1_1442_TPlot.pdf
TRINITY_DN3227_c0_g1:312	si_a545	TRINITY_DN3227_c0_g1	300	320	312	-28.10	-18.70	0.665480427046263	6	2-7,319-314;9-17,313-305;18-21,303-300	1-1,320-320[UP5];8-8,x-x[BULq];x-x,304-304[BULt]	((((.(((((((((-((((((.&.)))))).)))))))))-))))	AUAGCAGAAGUAGA-UGGACCU&CGGUUCAAUCUAUUUCU-UUAU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN3227_c0_g1_312_TPlot.pdf
TRINITY_DN3227_c0_g1:408	si_a81	TRINITY_DN3227_c0_g1	397	417	408	-23.00	-16.00	0.695652173913043	7	1-10,417-408;12-20,406-398	11-11,407-407[SIL];21-21,397-397[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	UUUUUCUUGGAAGUGAAGAAU&GUUUUUCAUUAUUAAGAAAAG	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN3227_c0_g1_408_TPlot.pdf
TRINITY_DN3227_c0_g1:410	si_a79	TRINITY_DN3227_c0_g1	399	419	410	-22.20	-15.70	0.707207207207207	6	2-12,418-408;14-21,406-399	1-1,419-419[UP5];13-13,407-407[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	UUUCUUGGAAGUGAAGAAUAC&UUGUUUUUCAUUAUUAAGAAA	2	0.987642480539365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN3227_c0_g1_410_TPlot.pdf
TRINITY_DN3228_c0_g2:1831	si_a221	TRINITY_DN3228_c0_g2	1822	1840	1831	-25.20	-17.40	0.69047619047619	3.5	1-12,1840-1829;15-21,1828-1822	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	UUAUGGA--UAUGAGUUUAAU&AUUAAACUCAUGUUUCUAUAA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN3228_c0_g2_1831_TPlot.pdf
TRINITY_DN3228_c1_g1:81	si_s39	TRINITY_DN3228_c1_g1	65	90	81	-22.30	-15.20	0.681614349775785	11.5	3-13,88-78;14-21,72-65	1-2,90-89[UP5];x-x,77-73[BULt]	((((((((.....(((((((((((..&..)))))))))))-----))))))))	GAGUCCAGAAUAUUUAUUGAAGGUCC&AAAUCUUUAAUAA-----UUGGAUUU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN3228_c1_g1_81_TPlot.pdf
TRINITY_DN3229_c1_g1:395	si_a20	TRINITY_DN3229_c1_g1	384	409	395	-26.70	-18.60	0.696629213483146	13	1-8,409-402;9-20,396-385	x-x,401-397[BULt];21-21,384-384[UP3]	.((((((((((((.....((((((((&))))))))-----)))))))))))).	CAGGAUUAAAAAUCUUGAAGAUAGGC&GCCUAUUU-----AUUUUUAGUUCUA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN3229_c1_g1_395_TPlot.pdf
TRINITY_DN3229_c1_g1:396	si_a19	TRINITY_DN3229_c1_g1	385	410	396	-27.00	-18.50	0.685185185185185	13	2-9,409-402;10-21,396-385	1-1,410-410[UP5];x-x,401-397[BULt]	((((((((((((.....((((((((.&.))))))))-----))))))))))))	AGGAUUAAAAAUCUUGAAGAUAGGCA&AGCCUAUUU-----AUUUUUAGUUCU	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN3229_c1_g1_396_TPlot.pdf
TRINITY_DN3229_c1_g1:664	si_a22	TRINITY_DN3229_c1_g1	654	673	664	-23.50	-15.70	0.668085106382979	5	1-15,673-659;17-21,658-654	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	UUUAG-AUUGAAAAUAGAUGG&CUAUUUAUUUUUAGUUCUAAG	2	0.998453865591477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN3229_c1_g1_664_TPlot.pdf
TRINITY_DN322_c0_g1:443	si_s530	TRINITY_DN322_c0_g1	432	452	443	-29.50	-19.50	0.661016949152542	6.5	1-3,452-450;4-7,448-445;9-20,444-433	x-x,449-449[BULt];8-8,x-x[BULq];21-21,432-432[UP3]	.((((((((((((-((((.(((&)))-)))).)))))))))))).	CUUGGAUCAAAAG-GAUUCUCG&CGA-AAUCAUUUUUGAUCCGAU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN322_c0_g1_443_TPlot.pdf
TRINITY_DN322_c0_g1:445	si_s527	TRINITY_DN322_c0_g1	435	455	445	-28.00	-19.60	0.7	7	1-6,455-450;7-10,448-445;12-21,444-435	x-x,449-449[BULt];11-11,x-x[BULq]	((((((((((-((((.((((((&))))))-)))).))))))))))	GGAUCAAAAG-GAUUCUCGGGU&AUUCGA-AAUCAUUUUUGAUCC	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN322_c0_g1_445_TPlot.pdf
TRINITY_DN3231_c0_g1:641	si_a727	TRINITY_DN3231_c0_g1	630	654	641	-39.70	-26.70	0.672544080604534	13	1-6,654-649;7-20,644-631	x-x,648-645[BULt];21-21,630-630[UP3]	.((((((((((((((....((((((&))))))----)))))))))))))).	AGGGUAAAGAUGUCUGCAUGGGUGA&UUACUC----GGGCAUCUUUACCCC	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN3231_c0_g1_641_TPlot.pdf
TRINITY_DN3231_c0_g1:642	si_a726	TRINITY_DN3231_c0_g1	631	655	642	-39.00	-28.00	0.717948717948718	12.5	1-7,655-649;8-21,644-631	x-x,648-645[BULt]	((((((((((((((....(((((((&)))))))----))))))))))))))	GGGUAAAGAUGUCUGCAUGGGUGAU&GUUACUC----GGGCAUCUUUACCC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a726_TRINITY_DN3231_c0_g1_642_TPlot.pdf
TRINITY_DN3231_c0_g1:736	si_a649	TRINITY_DN3231_c0_g1	727	746	736	-32.90	-22.20	0.674772036474164	7.5	1-6,746-741;7-16,739-730;19-21,729-727	x-x,740-740[BULt];17-18,x-x[BULq]	(((--((((((((((.((((((&))))))-))))))))))..)))	GUA--UCCCGGUGUGUUUACUC&GAGUAA-UAUAUCGGGAAAUGC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a649_TRINITY_DN3231_c0_g1_736_TPlot.pdf
TRINITY_DN3231_c0_g1:737	si_a648	TRINITY_DN3231_c0_g1	726	747	737	-31.10	-22.80	0.733118971061093	9	1-7,747-741;8-17,739-730	x-x,740-740[BULt];18-21,729-726[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	AGUAUCCCGGUGUGUUUACUCA&UGAGUAA-UAUAUCGGGAAAUG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN3231_c0_g1_737_TPlot.pdf
TRINITY_DN3231_c0_g1:739	si_a646	TRINITY_DN3231_c0_g1	728	749	739	-29.40	-24.10	0.819727891156463	7	1-9,749-741;10-19,739-730	x-x,740-740[BULt];20-21,729-728[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	UAUCCCGGUGUGUUUACUCAAG&UUUGAGUAA-UAUAUCGGGAAA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN3231_c0_g1_739_TPlot.pdf
TRINITY_DN3231_c0_g1:741	si_a645	TRINITY_DN3231_c0_g1	729	750	741	-29.40	-24.10	0.819727891156463	7	2-10,749-741;11-20,739-730	1-1,750-750[UP5];x-x,740-740[BULt];21-21,729-729[UP3]	.((((((((((.(((((((((.&.)))))))))-)))))))))).	AUCCCGGUGUGUUUACUCAAGU&UUUUGAGUAA-UAUAUCGGGAA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN3231_c0_g1_741_TPlot.pdf
TRINITY_DN3231_c0_g1:742	si_a644	TRINITY_DN3231_c0_g1	730	751	742	-29.30	-23.90	0.815699658703072	8	3-11,749-741;12-21,739-730	1-2,751-750[UP5];x-x,740-740[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	UCCCGGUGUGUUUACUCAAGUA&UUUUUGAGUAA-UAUAUCGGGA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN3231_c0_g1_742_TPlot.pdf
TRINITY_DN3231_c0_g1:743	si_a643	TRINITY_DN3231_c0_g1	731	752	743	-28.30	-21.90	0.773851590106007	9.5	4-12,749-741;13-21,739-731	1-3,752-750[UP5];x-x,740-740[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	CCCGGUGUGUUUACUCAAGUAU&UUUUUUGAGUAA-UAUAUCGGG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN3231_c0_g1_743_TPlot.pdf
TRINITY_DN3231_c0_g1:744	si_a642	TRINITY_DN3231_c0_g1	732	753	744	-25.90	-18.80	0.725868725868726	10.5	5-13,749-741;14-21,739-732	1-4,753-750[UP5];x-x,740-740[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	CCGGUGUGUUUACUCAAGUAUC&UUUUUUUGAGUAA-UAUAUCGG	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN3231_c0_g1_744_TPlot.pdf
TRINITY_DN3231_c0_g1:745	si_a641	TRINITY_DN3231_c0_g1	733	754	745	-23.60	-15.50	0.656779661016949	12.5	6-14,749-741;15-21,739-733	1-5,754-750[UP5];x-x,740-740[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	CGGUGUGUUUACUCAAGUAUCG&AUUUUUUUGAGUAA-UAUAUCG	3	0.999995299209174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN3231_c0_g1_745_TPlot.pdf
TRINITY_DN3233_c0_g1:527	si_a842	TRINITY_DN3233_c0_g1	515	536	527	-29.30	-19.60	0.668941979522184	9	2-8,535-529;11-17,526-520;18-20,518-516	1-1,536-536[UP5];9-10,528-527[SIL];x-x,519-519[BULt];21-21,515-515[UP3]	.(((.(((((((..(((((((.&.)))))))..)))))))-))).	CUCAUGGUUGGCUCCUUCUGUG&AAUAGAAGUUGCUAACU-UGAA	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a842_TRINITY_DN3233_c0_g1_527_TPlot.pdf
TRINITY_DN3233_c0_g1:531	si_a45	TRINITY_DN3233_c0_g1	520	544	531	-41.60	-29.48	0.708653846153846	13.5	2-9,543-536;11-21,530-520	1-1,544-544[UP5];10-10,535-531[AILt]	(((((((((((.....((((((((.&.))))))))----.)))))))))))	GGUUGGCUCCUUCUGUGGCCUACCA&CGGUAGGUC----UAGGAGUCGACU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a45_TRINITY_DN3233_c0_g1_531_TPlot.pdf
TRINITY_DN3233_c0_g1:975	si_a323	TRINITY_DN3233_c0_g1	963	985	975	-26.80	-18.50	0.690298507462687	7.5	1-4,985-982;5-13,980-972;16-21,968-963	x-x,981-981[BULt];14-15,971-969[AILt]	((((((...(((((((((.((((&))))-)))))))))-..))))))	GAGGAAGCUAGAAAAUCGUUGGA&UCCA-UGAUUUUUU-UAUUCCUU	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3233_c0_g1_975_TPlot.pdf
TRINITY_DN32366_c1_g1:180	si_s85	TRINITY_DN32366_c1_g1	167	189	180	-33.80	-22.60	0.668639053254438	9.5	1-15,189-175;17-21,171-167	16-16,174-172[AILt]	(((((...(((((((((((((((&)))))))))))))))--.)))))	GCGGAUACAAGAAGGGGGGGGGG&CUUUCCUUUCUUCUU--CUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN32366_c1_g1_180_TPlot.pdf
TRINITY_DN32377_c0_g1:720	si_s479	TRINITY_DN32377_c0_g1	709	729	720	-26.40	-19.50	0.738636363636364	9	2-15,728-715	1-1,729-729[UP5];16-21,714-709[UP3]	......((((((((((((((.&.))))))))))))))......	UUGCCCUAAGUAUAGGGUCCU&CGGAUCCUAUAUUUAUUUAAA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN32377_c0_g1_720_TPlot.pdf
TRINITY_DN3238_c0_g1:6736	si_a401	TRINITY_DN3238_c0_g1	6725	6745	6736	-22.60	-16.40	0.725663716814159	8.5	2-15,6744-6731	1-1,6745-6745[UP5];16-21,6730-6725[UP3]	......((((((((((((((.&.))))))))))))))......	AACAGUGCAAGACAAUUCUAC&AUAGAAUUGUUUUGUUUAUAU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN3238_c0_g1_6736_TPlot.pdf
TRINITY_DN3238_c0_g1:6742	si_a395	TRINITY_DN3238_c0_g1	6731	6751	6742	-24.70	-16.40	0.663967611336032	14	8-21,6744-6731	1-7,6751-6745[UP5]	((((((((((((((.......&.......))))))))))))))	GCAAGACAAUUCUACAACGCA&AAGAAUAUAGAAUUGUUUUGU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN3238_c0_g1_6742_TPlot.pdf
TRINITY_DN3239_c0_g1:307	si_a660	TRINITY_DN3239_c0_g1	293	316	307	-36.60	-24.50	0.669398907103825	8	2-13,315-304;14-19,300-295	1-1,316-316[UP5];x-x,303-301[BULt];20-21,294-293[UP3]	..((((((...((((((((((((.&.))))))))))))---))))))..	GUGAUCAGAGUUGGGCAUUUCCCA&CGGGAAAUGCCUA---UUGAUUCC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN3239_c0_g1_307_TPlot.pdf
TRINITY_DN323_c0_g1:2833	si_a123	TRINITY_DN323_c0_g1	2822	2842	2833	-26.60	-19.40	0.729323308270677	6.5	4-14,2839-2829;16-21,2827-2822	1-3,2842-2840[UP5];15-15,2828-2828[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UUGCUACUGCUAUAAAACUCA&CUUGUUUUAUAGCAAUAGUAA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN323_c0_g1_2833_TPlot.pdf
TRINITY_DN323_c1_g1:3245	si_a400	TRINITY_DN323_c1_g1	3234	3254	3245	-22.80	-15.50	0.679824561403509	8.5	3-12,3252-3243;14-21,3241-3234	1-2,3254-3253[UP5];13-13,3242-3242[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	UGUAAACAUGACGAUUUUGGU&UAUAGAAUUGUUUUGUUUAUA	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN323_c1_g1_3245_TPlot.pdf
TRINITY_DN323_c1_g1:4013	si_s485	TRINITY_DN323_c1_g1	4002	4022	4013	-18.10	-11.90	0.657458563535912	10	1-4,4022-4019;6-17,4017-4006	5-5,4018-4018[SIL];18-21,4005-4002[UP3]	....((((((((((((.((((&)))).))))))))))))....	GUGCUAUUUGAGUAGAAGUAG&CUAUAUUUAUUUAAAUAUAAA	3	0.999996313032064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN323_c1_g1_4013_TPlot.pdf
TRINITY_DN323_c1_g1:4167	si_a411	TRINITY_DN323_c1_g1	4156	4177	4167	-17.90	-11.80	0.659217877094972	10	2-6,4176-4172;9-21,4168-4156	1-1,4177-4177[UP5];7-8,4171-4169[AILt]	(((((((((((((...(((((.&.)))))-..)))))))))))))	AUUUAUUUAGAUGGUUAACAGU&UUUGUU-UAUAUUUAAAUAAAU	3	0.999999999985845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN323_c1_g1_4167_TPlot.pdf
TRINITY_DN323_c1_g1:805	si_a354	TRINITY_DN323_c1_g1	793	814	805	-26.20	-20.00	0.763358778625954	7	1-11,814-804;12-20,802-794	x-x,803-803[BULt];21-21,793-793[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	ACGAUCGAGAUUGGGGUUAAUA&UAUUAAUUCUA-UUUUGAUCGG	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN323_c1_g1_805_TPlot.pdf
TRINITY_DN323_c1_g1:808	si_a351	TRINITY_DN323_c1_g1	796	817	808	-20.50	-13.80	0.673170731707317	9.5	4-14,814-804;15-21,802-796	1-3,817-815[UP5];x-x,803-803[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AUCGAGAUUGGGGUUAAUAGCC&AAAUAUUAAUUCUA-UUUUGAU	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN323_c1_g1_808_TPlot.pdf
TRINITY_DN3240_c0_g1:377	si_a496	TRINITY_DN3240_c0_g1	366	386	377	-32.40	-21.20	0.654320987654321	9	3-12,384-375;15-21,372-366	1-2,386-385[UP5];13-14,374-373[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AGGAAGAGAAGGAAUGGCAGC&UAUGUCGUUUUUCGUCUUCCU	4	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3240_c0_g1_377_TPlot.pdf
TRINITY_DN3240_c0_g1:380	si_s67	TRINITY_DN3240_c0_g1	369	389	380	-25.60	-17.60	0.6875	8.5	1-2,389-388;5-6,385-384;8-21,382-369	3-4,387-386[SIL];7-7,383-383[SIL]	((((((((((((((.((..((&))..)).))))))))))))))	AAGAGAAGGAAUGGCAGCGGC&GCAACUUCUAUUUUUUUUCUU	4	0.999999963762016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3240_c0_g1_380_TPlot.pdf
TRINITY_DN3240_c0_g1:458	si_s688	TRINITY_DN3240_c0_g1	448	466	458	-28.20	-18.50	0.656028368794326	9.5	1-3,466-464;5-9,462-458;12-21,457-448	4-4,463-463[SIL];10-11,x-x[BULq]	((((((((((--(((((.(((&))).)))))..))))))))))	GGUCGACUGG--AAGCUGAUG&CAUGAGUUUAAUUAGUCGAUU	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN3240_c0_g1_458_TPlot.pdf
TRINITY_DN3240_c0_g1:697	si_a66	TRINITY_DN3240_c0_g1	688	706	697	-26.70	-17.80	0.666666666666667	9	1-11,706-696;14-18,695-691	12-13,x-x[BULq];19-21,690-688[UP3]	...(((((--(((((((((((&)))))))))))..)))))...	CGUGACGA--UGGAAGAGGCG&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999998241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3240_c0_g1_697_TPlot.pdf
TRINITY_DN3240_c0_g1:979	si_a785	TRINITY_DN3240_c0_g1	968	988	979	-25.90	-19.10	0.737451737451738	9	1-15,988-974	16-21,973-968[UP3]	......(((((((((((((((&)))))))))))))))......	UCGUACGGGAAGAUGGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN3240_c0_g1_979_TPlot.pdf
TRINITY_DN3240_c0_g1:980	si_a784	TRINITY_DN3240_c0_g1	969	989	980	-24.70	-19.10	0.773279352226721	9	2-16,988-974	1-1,989-989[UP5];17-21,973-969[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CGUACGGGAAGAUGGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3240_c0_g1_980_TPlot.pdf
TRINITY_DN3240_c0_g1:981	si_a783	TRINITY_DN3240_c0_g1	970	990	981	-24.70	-19.10	0.773279352226721	10	3-17,988-974	1-2,990-989[UP5];18-21,973-970[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUACGGGAAGAUGGAAGAGAC&AACUCUUCUAUUUUUCUAUUU	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3240_c0_g1_981_TPlot.pdf
TRINITY_DN3240_c0_g1:982	si_a782	TRINITY_DN3240_c0_g1	971	991	982	-26.40	-19.10	0.723484848484849	10.5	4-18,988-974	1-3,991-989[UP5];19-21,973-971[UP3]	...(((((((((((((((...&...)))))))))))))))...	UACGGGAAGAUGGAAGAGACG&CAACUCUUCUAUUUUUCUAUU	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN3240_c0_g1_982_TPlot.pdf
TRINITY_DN3240_c0_g1:983	si_a781	TRINITY_DN3240_c0_g1	972	992	983	-27.40	-20.10	0.733576642335766	8.5	1-2,992-991;5-19,988-974	3-4,990-989[SIL];20-21,973-972[UP3]	..(((((((((((((((..((&))..)))))))))))))))..	ACGGGAAGAUGGAAGAGACGA&UCAACUCUUCUAUUUUUCUAU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN3240_c0_g1_983_TPlot.pdf
TRINITY_DN3240_c0_g1:985	si_a779	TRINITY_DN3240_c0_g1	974	994	985	-27.00	-20.80	0.77037037037037	7	2-4,993-991;7-21,988-974	1-1,994-994[UP5];5-6,990-989[SIL]	(((((((((((((((..(((.&.)))..)))))))))))))))	GGGAAGAUGGAAGAGACGAAA&AUUCAACUCUUCUAUUUUUCU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN3240_c0_g1_985_TPlot.pdf
TRINITY_DN3240_c0_g1:986	si_a778	TRINITY_DN3240_c0_g1	975	995	986	-28.30	-19.60	0.692579505300353	8.5	3-5,993-991;8-21,988-975	1-2,995-994[UP5];6-7,990-989[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	GGAAGAUGGAAGAGACGAAAU&GAUUCAACUCUUCUAUUUUUC	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN3240_c0_g1_986_TPlot.pdf
TRINITY_DN3240_c0_g1:990	si_a774	TRINITY_DN3240_c0_g1	979	1001	990	-29.20	-20.20	0.691780821917808	10	1-6,1001-996;7-9,993-991;12-21,988-979	x-x,995-994[BULt];10-11,990-989[SIL]	((((((((((..(((..((((((&))))))--)))..))))))))))	GAUGGAAGAGACGAAAUUCGAUC&GAUUGA--UUCAACUCUUCUAUU	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN3240_c0_g1_990_TPlot.pdf
TRINITY_DN3241_c0_g1:1182	si_s39	TRINITY_DN3241_c0_g1	1173	1190	1182	-22.30	-14.50	0.650224215246637	8.5	2-9,1189-1182;13-21,1181-1173	1-1,1190-1190[UP5];10-12,x-x[BULq]	(((((((((---((((((((.&.))))))))...)))))))))	AAAUCCGAU---UGAAGAUUG&AAAUCUUUAAUAAUUGGAUUU	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN3241_c0_g1_1182_TPlot.pdf
TRINITY_DN3241_c0_g1:2075	si_s851	TRINITY_DN3241_c0_g1	2063	2085	2075	-42.20	-32.50	0.770142180094787	6	1-5,2085-2081;6-15,2079-2070;16-20,2068-2064	x-x,2080-2080[BULt];x-x,2069-2069[BULt];21-21,2063-2063[UP3]	.(((((.((((((((((.(((((&)))))-))))))))))-))))).	CGGUCUGAGGAGUUGGCUUCGCU&AGCGA-GUCGACUCCU-AGACCU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s851_TRINITY_DN3241_c0_g1_2075_TPlot.pdf
TRINITY_DN3241_c0_g1:2077	si_s849	TRINITY_DN3241_c0_g1	2065	2087	2077	-41.10	-29.10	0.708029197080292	8	3-7,2085-2081;8-17,2079-2070;18-21,2068-2065	1-2,2087-2086[UP5];x-x,2080-2080[BULt];x-x,2069-2069[BULt]	((((.((((((((((.(((((..&..)))))-))))))))))-))))	GUCUGAGGAGUUGGCUUCGCUGG&GAAGCGA-GUCGACUCCU-AGAC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s849_TRINITY_DN3241_c0_g1_2077_TPlot.pdf
TRINITY_DN3241_c0_g1:616	si_a266	TRINITY_DN3241_c0_g1	606	625	616	-38.30	-25.20	0.657963446475196	8.5	3-14,623-612;16-18,611-609	1-2,625-624[UP5];15-15,x-x[BULq];19-21,608-606[UP3]	...(((-((((((((((((..&..)))))))))))).)))...	GACUCG-GGGCGUUUGCCUCG&GAGGGCAAACGCCUACGAAAA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN3241_c0_g1_616_TPlot.pdf
TRINITY_DN3241_c0_g1:618	si_a264	TRINITY_DN3241_c0_g1	608	626	618	-40.80	-26.70	0.654411764705882	5.5	2-6,625-621;8-16,620-612;18-20,611-609	1-1,626-626[UP5];7-7,x-x[BULq];17-17,x-x[BULq];21-21,608-608[UP3]	.(((-(((((((((-(((((.&.))))).))))))))).))).	CUCG-GGGCGUUUG-CCUCGU&UCGAGGGCAAACGCCUACGAA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a264_TRINITY_DN3241_c0_g1_618_TPlot.pdf
TRINITY_DN3242_c0_g1:545	si_s796	TRINITY_DN3242_c0_g1	534	553	545	-30.30	-21.00	0.693069306930693	10.5	2-7,552-547;11-21,544-534	1-1,553-553[UP5];8-10,546-545[AILq]	(((((((((((..-((((((.&.))))))...)))))))))))	GACGAAGAUGAUG-AUGGGCG&AGCUCGUAUUUUAUCUUCGUU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3242_c0_g1_545_TPlot.pdf
TRINITY_DN3243_c0_g1:4897	si_a640	TRINITY_DN3243_c0_g1	4886	4906	4897	-24.10	-16.40	0.680497925311203	7.5	1-14,4906-4893	15-21,4892-4886[UP3]	.......((((((((((((((&)))))))))))))).......	UUGAUCCUGCUCAAAAAAAUC&GAUUUUUUUGAGUAAUAUAUC	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN3243_c0_g1_4897_TPlot.pdf
TRINITY_DN3247_c0_g1:1479	si_a401	TRINITY_DN3247_c0_g1	1468	1488	1479	-22.60	-15.20	0.672566371681416	7	1-17,1488-1472	18-21,1471-1468[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAAAGAACGAAAUAAUUUUAU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999990910955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN3247_c0_g1_1479_TPlot.pdf
TRINITY_DN3247_c0_g1:1484	si_a396	TRINITY_DN3247_c0_g1	1473	1493	1484	-24.70	-16.60	0.672064777327935	5	2-3,1492-1491;5-21,1489-1473	1-1,1493-1493[UP5];4-4,1490-1490[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	AACGAAAUAAUUUUAUAGUCA&AGAAUAUAGAAUUGUUUUGUU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN3247_c0_g1_1484_TPlot.pdf
TRINITY_DN3249_c0_g2:1463	si_s490	TRINITY_DN3249_c0_g2	1452	1474	1463	-17.80	-12.60	0.707865168539326	8	3-9,1472-1466;10-21,1463-1452	1-2,1474-1473[UP5];x-x,1465-1464[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	UUUUGUUUAUAUUAUUGAAUAUA&UUUAUUUAA--AUAUAAACAAAA	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN3249_c0_g2_1463_TPlot.pdf
TRINITY_DN3249_c0_g2:1466	si_s489	TRINITY_DN3249_c0_g2	1453	1475	1466	-17.90	-11.80	0.659217877094972	10	4-10,1472-1466;11-21,1463-1453	1-3,1475-1473[UP5];x-x,1465-1464[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	UUUGUUUAUAUUAUUGAAUAUAU&AUUUAUUUAA--AUAUAAACAAA	2	0.998016861159279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN3249_c0_g2_1466_TPlot.pdf
TRINITY_DN3249_c0_g2:1874	si_a477	TRINITY_DN3249_c0_g2	1862	1883	1874	-21.50	-14.80	0.688372093023256	4	1-13,1883-1871;14-19,1869-1864	x-x,1870-1870[BULt];20-21,1863-1862[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	AUUUCUAUAAUAAUAAUAAUUA&UAAUUAUUGUUAU-AUAGAAUA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN3249_c0_g2_1874_TPlot.pdf
TRINITY_DN3249_c0_g2:1875	si_a476	TRINITY_DN3249_c0_g2	1863	1884	1875	-22.90	-16.10	0.703056768558952	3.5	1-14,1884-1871;15-20,1869-1864	x-x,1870-1870[BULt];21-21,1863-1863[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	UUUCUAUAAUAAUAAUAAUUAU&GUAAUUAUUGUUAU-AUAGAAU	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN3249_c0_g2_1875_TPlot.pdf
TRINITY_DN3249_c0_g2:1876	si_a475	TRINITY_DN3249_c0_g2	1864	1885	1876	-23.50	-16.00	0.680851063829787	4	2-15,1884-1871;16-21,1869-1864	1-1,1885-1885[UP5];x-x,1870-1870[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	UUCUAUAAUAAUAAUAAUUAUU&UGUAAUUAUUGUUAU-AUAGAA	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN3249_c0_g2_1876_TPlot.pdf
TRINITY_DN3249_c0_g2:2557	si_a813	TRINITY_DN3249_c0_g2	2547	2566	2557	-32.90	-21.60	0.656534954407295	5	1-4,2566-2563;6-6,2561-2561;8-12,2559-2555;14-21,2554-2547	5-5,2562-2562[SIL];7-7,2560-2560[SIL];13-13,x-x[BULq]	((((((((-(((((.(.((((&)))).).))))).))))))))	UUCCUUUC-UCUUCCUGGCUU&AAGCGAAGAAGAAGAAAGGAA	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN3249_c0_g2_2557_TPlot.pdf
TRINITY_DN3249_c0_g2:2558	si_a812	TRINITY_DN3249_c0_g2	2548	2567	2558	-34.80	-24.00	0.689655172413793	5	1-5,2567-2563;7-7,2561-2561;9-13,2559-2555;15-21,2554-2548	6-6,2562-2562[SIL];8-8,2560-2560[SIL];14-14,x-x[BULq]	(((((((-(((((.(.(((((&))))).).))))).)))))))	UCCUUUC-UCUUCCUGGCUUC&GAAGCGAAGAAGAAGAAAGGA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN3249_c0_g2_2558_TPlot.pdf
TRINITY_DN3249_c0_g2:2612	si_s125	TRINITY_DN3249_c0_g2	2602	2621	2612	-27.20	-17.90	0.658088235294118	7.5	4-12,2618-2610;14-21,2609-2602	1-3,2621-2619[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	AUUGGUUC-AUUCUUCUACCU&AAAUAGAAGAGUUGAAUCAAU	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN3249_c0_g2_2612_TPlot.pdf
TRINITY_DN3249_c0_g2:2661	si_a376	TRINITY_DN3249_c0_g2	2645	2670	2661	-23.90	-15.90	0.665271966527197	12	1-12,2670-2659;13-21,2653-2645	x-x,2658-2654[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	UUAAUUCGAUUUAGAAUUGUUUUUGA&UCAAAAAUGAUU-----UCGAAUUAA	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a376_TRINITY_DN3249_c0_g2_2661_TPlot.pdf
TRINITY_DN3249_c0_g2:2662	si_a375	TRINITY_DN3249_c0_g2	2646	2671	2662	-24.00	-16.10	0.670833333333333	7	1-13,2671-2659;14-21,2653-2646	x-x,2658-2654[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	UAAUUCGAUUUAGAAUUGUUUUUGAU&AUCAAAAAUGAUU-----UCGAAUUA	2	0.827076674066767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN3249_c0_g2_2662_TPlot.pdf
TRINITY_DN3249_c0_g2:2965	si_a568	TRINITY_DN3249_c0_g2	2954	2974	2965	-36.20	-23.90	0.660220994475138	6	1-12,2974-2963;14-19,2961-2956	13-13,2962-2962[SIL];20-21,2955-2954[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	CAAGAUAUCCGAUUUAUGGGG&CCCCGUGAAUCGUAUGUUUGU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a568_TRINITY_DN3249_c0_g2_2965_TPlot.pdf
TRINITY_DN3249_c0_g2:2966	si_a567	TRINITY_DN3249_c0_g2	2955	2975	2966	-36.40	-24.10	0.662087912087912	5.5	1-13,2975-2963;15-20,2961-2956	14-14,2962-2962[SIL];21-21,2955-2955[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AAGAUAUCCGAUUUAUGGGGG&UCCCCGUGAAUCGUAUGUUUG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a567_TRINITY_DN3249_c0_g2_2966_TPlot.pdf
TRINITY_DN3249_c0_g2:2967	si_a566	TRINITY_DN3249_c0_g2	2956	2976	2967	-36.40	-27.10	0.744505494505495	5	1-14,2976-2963;16-21,2961-2956	15-15,2962-2962[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	AGAUAUCCGAUUUAUGGGGGG&CUCCCCGUGAAUCGUAUGUUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN3249_c0_g2_2967_TPlot.pdf
TRINITY_DN3249_c0_g2:2968	si_a565	TRINITY_DN3249_c0_g2	2957	2977	2968	-37.40	-26.50	0.70855614973262	5.5	1-15,2977-2963;17-21,2961-2957	16-16,2962-2962[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GAUAUCCGAUUUAUGGGGGGG&UCUCCCCGUGAAUCGUAUGUU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN3249_c0_g2_2968_TPlot.pdf
TRINITY_DN3249_c0_g2:2969	si_a564	TRINITY_DN3249_c0_g2	2958	2978	2969	-37.60	-26.70	0.710106382978723	5.5	1-16,2978-2963;18-21,2961-2958	17-17,2962-2962[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	AUAUCCGAUUUAUGGGGGGGU&AUCUCCCCGUGAAUCGUAUGU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN3249_c0_g2_2969_TPlot.pdf
TRINITY_DN3249_c0_g2:2970	si_a563	TRINITY_DN3249_c0_g2	2959	2979	2970	-37.20	-25.20	0.67741935483871	9	2-17,2978-2963	1-1,2979-2979[UP5];18-21,2962-2959[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUCCGAUUUAUGGGGGGGUU&UAUCUCCCCGUGAAUCGUAUG	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a563_TRINITY_DN3249_c0_g2_2970_TPlot.pdf
TRINITY_DN3249_c0_g2:2971	si_a562	TRINITY_DN3249_c0_g2	2960	2980	2971	-35.60	-25.20	0.707865168539326	9.5	3-18,2978-2963	1-2,2980-2979[UP5];19-21,2962-2960[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUCCGAUUUAUGGGGGGGUUG&UUAUCUCCCCGUGAAUCGUAU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a562_TRINITY_DN3249_c0_g2_2971_TPlot.pdf
TRINITY_DN3249_c0_g2:2972	si_a561	TRINITY_DN3249_c0_g2	2961	2981	2972	-35.40	-25.20	0.711864406779661	10.5	4-19,2978-2963	1-3,2981-2979[UP5];20-21,2962-2961[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCCGAUUUAUGGGGGGGUUGG&UUUAUCUCCCCGUGAAUCGUA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN3249_c0_g2_2972_TPlot.pdf
TRINITY_DN3249_c0_g2:2973	si_a560	TRINITY_DN3249_c0_g2	2962	2982	2973	-36.60	-25.20	0.688524590163934	11	5-20,2978-2963	1-4,2982-2979[UP5];21-21,2962-2962[UP3]	.((((((((((((((((....&....)))))))))))))))).	CCGAUUUAUGGGGGGGUUGGU&CUUUAUCUCCCCGUGAAUCGU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN3249_c0_g2_2973_TPlot.pdf
TRINITY_DN3249_c0_g2:2974	si_a559	TRINITY_DN3249_c0_g2	2963	2983	2974	-36.80	-24.90	0.676630434782609	12	6-21,2978-2963	1-5,2983-2979[UP5]	((((((((((((((((.....&.....))))))))))))))))	CGAUUUAUGGGGGGGUUGGUC&UCUUUAUCUCCCCGUGAAUCG	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN3249_c0_g2_2974_TPlot.pdf
TRINITY_DN3249_c0_g2:799	si_a5	TRINITY_DN3249_c0_g2	788	808	799	-31.10	-21.10	0.678456591639871	6	1-12,808-797;14-17,795-792	13-13,796-796[SIL];18-21,791-788[UP3]	....((((.((((((((((((&)))))))))))).))))....	AAUUGCUUACUCUUCAGUUUC&GAAAUUGAAGAGAAAGCCUAU	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN3249_c0_g2_799_TPlot.pdf
TRINITY_DN3249_c0_g2:800	si_a4	TRINITY_DN3249_c0_g2	789	809	800	-31.60	-21.30	0.674050632911392	6	2-13,808-797;15-18,795-792	1-1,809-809[UP5];14-14,796-796[SIL];19-21,791-789[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	AUUGCUUACUCUUCAGUUUCU&UGAAAUUGAAGAGAAAGCCUA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN3249_c0_g2_800_TPlot.pdf
TRINITY_DN3249_c0_g2:801	si_a3	TRINITY_DN3249_c0_g2	790	810	801	-31.30	-21.30	0.680511182108626	7	3-14,808-797;16-19,795-792	1-2,810-809[UP5];15-15,796-796[SIL];20-21,791-790[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UUGCUUACUCUUCAGUUUCUC&UUGAAAUUGAAGAGAAAGCCU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN3249_c0_g2_801_TPlot.pdf
TRINITY_DN3249_c0_g2:803	si_a1	TRINITY_DN3249_c0_g2	792	812	803	-28.30	-21.30	0.752650176678445	9	5-16,808-797;18-21,795-792	1-4,812-809[UP5];17-17,796-796[SIL]	((((.((((((((((((....&....)))))))))))).))))	GCUUACUCUUCAGUUUCUCAU&AAUUGAAAUUGAAGAGAAAGC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN3249_c0_g2_803_TPlot.pdf
TRINITY_DN3249_c0_g2:875	si_a861	TRINITY_DN3249_c0_g2	864	896	875	-22.30	-14.50	0.650224215246637	28	2-7,895-890;8-21,877-864	1-1,896-896[UP5];x-x,889-878[BULt]	((((((((((((((............((((((.&.))))))------------))))))))))))))	GGAUCUUUAGUGAUAAUAUUAGCUCAUGGAUUA&AAAUCCA------------AUUAUUAAAGAUUU	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN3249_c0_g2_875_TPlot.pdf
TRINITY_DN32522_c0_g2:701	si_a761	TRINITY_DN32522_c0_g2	691	710	701	-30.10	-20.60	0.684385382059801	8.5	1-8,710-703;11-15,700-696;18-21,694-691	9-10,702-701[SIL];16-17,695-695[AILq]	((((.-(((((..((((((((&))))))))..)))))..))))	GAUCU-UCAAAUUCCCGGAGG&CCUUUGGGUUUUUGAUUGAUU	2	0.999435819007082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN32522_c0_g2_701_TPlot.pdf
TRINITY_DN3252_c0_g1:863	si_a777	TRINITY_DN3252_c0_g1	852	872	863	-27.00	-17.70	0.655555555555556	11	3-15,870-858	1-2,872-871[UP5];16-21,857-852[UP3]	......(((((((((((((..&..)))))))))))))......	UACGGAAGAAGGGUUGAGUAA&UGAUUCAACUCUUCUAUUUUU	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN3252_c0_g1_863_TPlot.pdf
TRINITY_DN3253_c0_g1:1470	si_a702	TRINITY_DN3253_c0_g1	1460	1479	1470	-30.80	-20.50	0.665584415584416	6.5	1-2,1479-1478;4-10,1476-1470;12-20,1469-1461	3-3,1477-1477[SIL];11-11,x-x[BULq];21-21,1460-1460[UP3]	.(((((((((-(((((((.((&)).))))))).))))))))).	GGUUUUGGAA-GUACUAGCUG&CAACUGGUACAUUCCAAAAUA	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN3253_c0_g1_1470_TPlot.pdf
TRINITY_DN3253_c0_g1:1485	si_s78	TRINITY_DN3253_c0_g1	1475	1494	1485	-26.20	-17.10	0.652671755725191	5	1-10,1494-1485;12-17,1484-1479;20-21,1476-1475	11-11,x-x[BULq];18-19,1478-1477[SIL]	((..((((((-((((((((((&)))))))))).))))))..))	AGCUGAAAGG-AAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3253_c0_g1_1485_TPlot.pdf
TRINITY_DN3253_c0_g1:1487	si_s76	TRINITY_DN3253_c0_g1	1477	1496	1487	-23.60	-17.40	0.73728813559322	5	2-12,1495-1485;14-19,1484-1479	1-1,1496-1496[UP5];13-13,x-x[BULq];20-21,1478-1477[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	CUGAAAGG-AAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3253_c0_g1_1487_TPlot.pdf
TRINITY_DN3253_c0_g1:1489	si_s75	TRINITY_DN3253_c0_g1	1478	1498	1489	-24.00	-17.80	0.741666666666667	5	1-10,1498-1489;12-20,1487-1479	11-11,1488-1488[SIL];21-21,1478-1478[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	UGAAAGGAAGAAAAAGAAAUA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999999233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3253_c0_g1_1489_TPlot.pdf
TRINITY_DN32547_c0_g1:20	si_s212	TRINITY_DN32547_c0_g1	9	29	20	-38.70	-26.70	0.689922480620155	7.5	1-9,29-21;12-13,18-17;16-20,14-10	10-11,20-19[SIL];14-15,16-15[SIL];21-21,9-9[UP3]	.(((((..((..(((((((((&)))))))))..))..))))).	GGCGGUGGUGCUCACAACUGG&CCAGUUGUGUUCGAAACCGCG	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN32547_c0_g1_20_TPlot.pdf
TRINITY_DN3254_c0_g1:1322	si_a399	TRINITY_DN3254_c0_g1	1311	1332	1322	-22.60	-15.90	0.70353982300885	7	1-7,1332-1326;9-21,1323-1311	8-8,1325-1324[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	GUAGACAAAACAAAAUUUGUAU&AUAUAGA-AUUGUUUUGUUUAU	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3254_c0_g1_1322_TPlot.pdf
TRINITY_DN3254_c0_g1:1323	si_a398	TRINITY_DN3254_c0_g1	1312	1333	1323	-22.40	-14.60	0.651785714285714	7.5	2-8,1332-1326;10-21,1323-1312	1-1,1333-1333[UP5];9-9,1325-1324[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	UAGACAAAACAAAAUUUGUAUC&AAUAUAGA-AUUGUUUUGUUUA	2	0.99999990831305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3254_c0_g1_1323_TPlot.pdf
TRINITY_DN3254_c0_g1:1378	si_s574	TRINITY_DN3254_c0_g1	1365	1387	1378	-26.20	-17.40	0.66412213740458	3	1-15,1387-1373;16-18,1371-1369;19-21,1367-1365	x-x,1372-1372[BULt];x-x,1368-1368[BULt]	(((.(((.(((((((((((((((&)))))))))))))))-)))-)))	AUGUAUUAUUUUUAUUUCUUGUC&GACAAGGAAUAAAAA-AAU-CAU	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN3254_c0_g1_1378_TPlot.pdf
TRINITY_DN3256_c0_g1:1331	si_a397	TRINITY_DN3256_c0_g1	1320	1340	1331	-24.00	-15.80	0.658333333333333	9	1-10,1340-1331;13-18,1328-1323	11-12,1330-1329[SIL];19-21,1322-1320[UP3]	...((((((..((((((((((&))))))))))..))))))...	CAUCAAAACUUUUUUAUGUUC&GAAUAUAGAAUUGUUUUGUUU	3	0.999994902724407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN3256_c0_g1_1331_TPlot.pdf
TRINITY_DN3257_c0_g1:1123	si_a76	TRINITY_DN3257_c0_g1	1112	1132	1123	-21.20	-13.80	0.650943396226415	15.5	6-10,1127-1123;12-21,1121-1112	1-5,1132-1128[UP5];11-11,1122-1122[SIL]	((((((((((.(((((.....&.....))))).))))))))))	CUUGAUGGUGUGGAGCUGAAU&AAAUUGUUUUUCAUUAUUAAG	2	0.999999993919301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3257_c0_g1_1123_TPlot.pdf
TRINITY_DN3257_c0_g1:1133	si_a769	TRINITY_DN3257_c0_g1	1122	1142	1133	-26.70	-18.10	0.677902621722847	8	1-9,1142-1134;11-15,1132-1128;17-20,1126-1123	10-10,1133-1133[SIL];16-16,1127-1127[SIL];21-21,1122-1122[UP3]	.((((.(((((.(((((((((&))))))))).))))).)))).	UGGAGCUGAAUGGAUCGAAGG&UUUUUGAUUGAUUCAACUCUU	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN3257_c0_g1_1133_TPlot.pdf
TRINITY_DN3257_c0_g1:1134	si_a768	TRINITY_DN3257_c0_g1	1123	1143	1134	-28.40	-21.50	0.757042253521127	7.5	1-10,1143-1134;12-16,1132-1128;18-21,1126-1123	11-11,1133-1133[SIL];17-17,1127-1127[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	GGAGCUGAAUGGAUCGAAGGC&GUUUUUGAUUGAUUCAACUCU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN3257_c0_g1_1134_TPlot.pdf
TRINITY_DN3257_c0_g1:1181	si_s651	TRINITY_DN3257_c0_g1	1170	1190	1181	-41.10	-27.30	0.664233576642336	7.5	1-4,1190-1187;6-10,1185-1181;12-20,1179-1171	5-5,1186-1186[SIL];11-11,1180-1180[SIL];21-21,1170-1170[UP3]	.(((((((((.(((((.((((&)))).))))).))))))))).	UGUCCUUCGACUGUGUGGAGG&CCUCGAUACAAUCGGGGGAUC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s651_TRINITY_DN3257_c0_g1_1181_TPlot.pdf
TRINITY_DN3257_c0_g1:1182	si_s650	TRINITY_DN3257_c0_g1	1171	1191	1182	-41.50	-30.30	0.730120481927711	6.5	1-5,1191-1187;7-11,1185-1181;13-21,1179-1171	6-6,1186-1186[SIL];12-12,1180-1180[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	GUCCUUCGACUGUGUGGAGGG&CCCUCGAUACAAUCGGGGGAU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s650_TRINITY_DN3257_c0_g1_1182_TPlot.pdf
TRINITY_DN3257_c0_g1:1183	si_s649	TRINITY_DN3257_c0_g1	1172	1192	1183	-43.80	-29.20	0.666666666666667	6	2-6,1191-1187;8-12,1185-1181;14-21,1179-1172	1-1,1192-1192[UP5];7-7,1186-1186[SIL];13-13,1180-1180[SIL]	((((((((.(((((.(((((.&.))))).))))).))))))))	UCCUUCGACUGUGUGGAGGGA&GCCCUCGAUACAAUCGGGGGA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN3257_c0_g1_1183_TPlot.pdf
TRINITY_DN3257_c0_g1:1431	si_a64	TRINITY_DN3257_c0_g1	1420	1440	1431	-29.40	-19.60	0.666666666666667	11	1-12,1440-1429	13-21,1428-1420[UP3]	.........((((((((((((&)))))))))))).........	GUGGGAAGCGAAAGAGGCGGG&CUCGCUUCUUUCAAAUUGUUU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN3257_c0_g1_1431_TPlot.pdf
TRINITY_DN3257_c0_g1:1432	si_a63	TRINITY_DN3257_c0_g1	1421	1441	1432	-30.20	-19.80	0.655629139072848	11	2-13,1440-1429	1-1,1441-1441[UP5];14-21,1428-1421[UP3]	........((((((((((((.&.))))))))))))........	UGGGAAGCGAAAGAGGCGGGG&ACUCGCUUCUUUCAAAUUGUU	2	0.998159561295461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN3257_c0_g1_1432_TPlot.pdf
TRINITY_DN3257_c0_g1:2034	si_a833	TRINITY_DN3257_c0_g1	2022	2044	2034	-25.60	-18.00	0.703125	6	2-4,2043-2041;5-12,2039-2032;13-21,2030-2022	1-1,2044-2044[UP5];x-x,2040-2040[BULt];x-x,2031-2031[BULt]	(((((((((.((((((((.(((.&.)))-))))))))-)))))))))	GCGGCUUCUGAUUUUUUUGUCUC&AAGA-AAAAAAAU-AGAAGUUGC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN3257_c0_g1_2034_TPlot.pdf
TRINITY_DN3257_c0_g1:3804	si_s797	TRINITY_DN3257_c0_g1	3791	3813	3804	-30.00	-22.40	0.746666666666667	8.5	1-15,3813-3799;16-17,3796-3795;19-20,3793-3792	x-x,3798-3797[BULt];18-18,3794-3794[SIL];21-21,3791-3791[UP3]	.((.((..(((((((((((((((&)))))))))))))))--)).)).	AGAGGAACAGAUAGAGUGCGGGC&GCUCGUAUUUUAUCU--UCGUUA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3257_c0_g1_3804_TPlot.pdf
TRINITY_DN3257_c0_g1:3805	si_s796	TRINITY_DN3257_c0_g1	3792	3814	3805	-30.30	-23.30	0.768976897689769	7.5	1-16,3814-3799;17-18,3796-3795;20-21,3793-3792	x-x,3798-3797[BULt];19-19,3794-3794[SIL]	((.((..((((((((((((((((&))))))))))))))))--)).))	GAGGAACAGAUAGAGUGCGGGCU&AGCUCGUAUUUUAUCU--UCGUU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3257_c0_g1_3805_TPlot.pdf
TRINITY_DN3257_c0_g1:3807	si_s794	TRINITY_DN3257_c0_g1	3794	3816	3807	-31.20	-22.50	0.721153846153846	9.5	3-18,3814-3799;19-20,3796-3795	1-2,3816-3815[UP5];x-x,3798-3797[BULt];21-21,3794-3794[UP3]	.((..((((((((((((((((..&..))))))))))))))))--)).	GGAACAGAUAGAGUGCGGGCUGG&CAAGCUCGUAUUUUAUCU--UCG	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN3257_c0_g1_3807_TPlot.pdf
TRINITY_DN3257_c0_g1:570	si_s207	TRINITY_DN3257_c0_g1	559	580	570	-33.00	-21.80	0.660606060606061	11.5	3-6,578-575;7-8,573-572;10-18,570-562	1-2,580-579[UP5];x-x,574-574[BULt];9-9,571-571[SIL];19-21,561-559[UP3]	...(((((((((.((.((((..&..))))-)).)))))))))...	GACCGAGCACAAGUGCGUGCUG&AUGUAC-CAGUUGUGUUCGAAA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN3257_c0_g1_570_TPlot.pdf
TRINITY_DN3257_c0_g1:613	si_s206	TRINITY_DN3257_c0_g1	602	622	613	-33.00	-21.60	0.654545454545455	9.5	2-5,621-618;7-18,616-605	1-1,622-622[UP5];6-6,617-617[SIL];19-21,604-602[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	CAUGAGCACGGCUGGGAUAUC&AAUGUACCAGUUGUGUUCGAA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN3257_c0_g1_613_TPlot.pdf
TRINITY_DN3257_c0_g1:670	si_a66	TRINITY_DN3257_c0_g1	660	679	670	-26.70	-19.40	0.726591760299625	8.5	1-11,679-669;14-18,667-663	12-13,668-668[AILq];19-21,662-660[UP3]	...(((((.-(((((((((((&)))))))))))..)))))...	CGCAGCAAG-UGGAAGAGGCG&CGCUUCUUUCAAAUUGUUUUU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3257_c0_g1_670_TPlot.pdf
TRINITY_DN3257_c0_g1:671	si_a65	TRINITY_DN3257_c0_g1	661	680	671	-27.70	-20.80	0.750902527075812	6.5	1-12,680-669;15-19,667-663	13-14,668-668[AILq];20-21,662-661[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	GCAGCAAG-UGGAAGAGGCGA&UCGCUUCUUUCAAAUUGUUUU	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN3257_c0_g1_671_TPlot.pdf
TRINITY_DN3257_c0_g1:673	si_a63	TRINITY_DN3257_c0_g1	663	682	673	-30.20	-21.00	0.695364238410596	7.5	3-14,680-669;17-21,667-663	1-2,682-681[UP5];15-16,668-668[AILq]	(((((.-((((((((((((..&..))))))))))))..)))))	AGCAAG-UGGAAGAGGCGAUC&ACUCGCUUCUUUCAAAUUGUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN3257_c0_g1_673_TPlot.pdf
TRINITY_DN3257_c0_g1:677	si_a59	TRINITY_DN3257_c0_g1	666	688	677	-34.00	-22.78	0.67	12.5	1-4,688-685;7-18,680-669	5-6,684-681[AILt];19-21,668-666[UP3]	...((((((((((((....((((&))))--..))))))))))))...	AAGUGGAAGAGGCGAUCCGCGAC&GUCG--ACUCGCUUCUUUCAAAU	2	0.988813635845706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN3257_c0_g1_677_TPlot.pdf
TRINITY_DN3257_c0_g1:963	si_s87	TRINITY_DN3257_c0_g1	952	972	963	-32.90	-22.90	0.696048632218845	8.5	1-10,972-963;13-20,960-953	11-12,962-961[SIL];21-21,952-952[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	UGGCGGAGGUCAGGAGAGGAA&UUCCUUUCUUCUUCUUCGCUU	3	0.999999999997253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3257_c0_g1_963_TPlot.pdf
TRINITY_DN3257_c0_g1:964	si_s86	TRINITY_DN3257_c0_g1	953	973	964	-32.90	-23.10	0.702127659574468	7.5	2-11,972-963;14-21,960-953	1-1,973-973[UP5];12-13,962-961[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	GGCGGAGGUCAGGAGAGGAAU&UUUCCUUUCUUCUUCUUCGCU	2	0.999998794399737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3257_c0_g1_964_TPlot.pdf
TRINITY_DN3257_c0_g1:967	si_s78	TRINITY_DN3257_c0_g1	956	976	967	-26.20	-17.90	0.683206106870229	12	5-14,972-963;17-21,960-956	1-4,976-973[UP5];15-16,962-961[SIL]	(((((..((((((((((....&....))))))))))..)))))	GGAGGUCAGGAGAGGAAUCUC&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3257_c0_g1_967_TPlot.pdf
TRINITY_DN3257_c0_g1:968	si_s77	TRINITY_DN3257_c0_g1	957	977	968	-25.50	-16.70	0.654901960784314	13.5	6-15,972-963;18-21,960-957	1-5,977-973[UP5];16-17,962-961[SIL]	((((..((((((((((.....&.....))))))))))..))))	GAGGUCAGGAGAGGAAUCUCC&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3257_c0_g1_968_TPlot.pdf
TRINITY_DN32588_c0_g1:146	si_a336	TRINITY_DN32588_c0_g1	135	155	146	-31.20	-25.10	0.80448717948718	6	1-13,155-143;15-18,141-138	14-14,142-142[SIL];19-21,137-135[UP3]	...((((.(((((((((((((&))))))))))))).))))...	GAUUUUUGGGGACAGGGGAUA&UAUUCCUUGUCCCGAAAAUAU	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN32588_c0_g1_146_TPlot.pdf
TRINITY_DN32588_c0_g1:153	si_a329	TRINITY_DN32588_c0_g1	142	162	153	-29.60	-23.20	0.783783783783784	13.5	7-20,156-143	1-6,162-157[UP5];21-21,142-142[UP3]	.((((((((((((((......&......)))))))))))))).	GGGGACAGGGGAUAAUGCUGA&AUUUUUUUAUUCCUUGUCCCG	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN32588_c0_g1_153_TPlot.pdf
TRINITY_DN3258_c0_g1:1680	si_s432	TRINITY_DN3258_c0_g1	1669	1689	1680	-21.30	-14.60	0.685446009389671	10.5	3-15,1687-1675	1-2,1689-1688[UP5];16-21,1674-1669[UP3]	......(((((((((((((..&..)))))))))))))......	GGUGUAGUGUGAUUAUUGUGG&UAACAAUAAUUACAUAUUAUA	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN3258_c0_g1_1680_TPlot.pdf
TRINITY_DN3258_c0_g1:1683	si_s429	TRINITY_DN3258_c0_g1	1672	1692	1683	-21.10	-14.60	0.691943127962085	13	6-18,1687-1675	1-5,1692-1688[UP5];19-21,1674-1672[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUAGUGUGAUUAUUGUGGACG&AUAUAACAAUAAUUACAUAUU	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN3258_c0_g1_1683_TPlot.pdf
TRINITY_DN3258_c0_g1:2341	si_a169	TRINITY_DN3258_c0_g1	2331	2350	2341	-34.30	-23.10	0.673469387755102	4.5	1-12,2350-2339;14-15,2337-2336;17-20,2335-2332	13-13,2338-2338[SIL];16-16,x-x[BULq];21-21,2331-2331[UP3]	.((((-((.((((((((((((&)))))))))))).)).)))).	AUAUC-AGCCGGGUGGAUAGG&UCUAUUCACCCGUCUAGAUAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a169_TRINITY_DN3258_c0_g1_2341_TPlot.pdf
TRINITY_DN3258_c0_g1:2342	si_a168	TRINITY_DN3258_c0_g1	2332	2351	2342	-34.40	-22.90	0.665697674418605	5	2-13,2350-2339;15-16,2337-2336;18-21,2335-2332	1-1,2351-2351[UP5];14-14,2338-2338[SIL];17-17,x-x[BULq]	((((-((.((((((((((((.&.)))))))))))).)).))))	UAUC-AGCCGGGUGGAUAGGC&AUCUAUUCACCCGUCUAGAUA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN3258_c0_g1_2342_TPlot.pdf
TRINITY_DN3258_c0_g1:2346	si_a675	TRINITY_DN3258_c0_g1	2335	2354	2346	-34.00	-22.50	0.661764705882353	9.5	1-3,2354-2352;6-14,2350-2342;16-20,2340-2336	4-5,2351-2351[AILq];15-15,2341-2341[SIL];21-21,2335-2335[UP3]	.(((((.(((((((((.-(((&)))..))))))))).))))).	CAGCCGGGUGGAUAGGC-GUC&GAUUCCUUAUUCACGCGGUUU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN3258_c0_g1_2346_TPlot.pdf
TRINITY_DN3258_c0_g1:2347	si_a674	TRINITY_DN3258_c0_g1	2336	2355	2347	-34.70	-22.60	0.651296829971182	9.5	2-4,2354-2352;7-15,2350-2342;17-21,2340-2336	1-1,2355-2355[UP5];5-6,2351-2351[AILq];16-16,2341-2341[SIL]	(((((.(((((((((.-(((.&.)))..))))))))).)))))	AGCCGGGUGGAUAGGC-GUCG&UGAUUCCUUAUUCACGCGGUU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN3258_c0_g1_2347_TPlot.pdf
TRINITY_DN3258_c0_g1:2485	si_s380	TRINITY_DN3258_c0_g1	2473	2494	2485	-40.00	-27.80	0.695	8.5	3-5,2492-2490;7-14,2488-2481;15-21,2479-2473	1-2,2494-2493[UP5];6-6,2489-2489[SIL];x-x,2480-2480[BULt]	(((((((.((((((((.(((..&..))).))))))))-)))))))	GGUGUGAGGGUGGACAGGCGUU&CUCGCGUGUCCGCC-UUACAUU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN3258_c0_g1_2485_TPlot.pdf
TRINITY_DN3258_c0_g1:2779	si_a494	TRINITY_DN3258_c0_g1	2768	2788	2779	-29.50	-20.20	0.684745762711864	9.5	2-6,2787-2783;8-18,2781-2771	1-1,2788-2788[UP5];7-7,2782-2782[SIL];19-21,2770-2768[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	UGUGACGGAAGGCGUCGUAUG&AAUAUGUCGUUUUUCGUCUUC	3	0.999999922832203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN3258_c0_g1_2779_TPlot.pdf
TRINITY_DN3258_c0_g1:2891	si_s437	TRINITY_DN3258_c0_g1	2880	2900	2891	-19.70	-13.90	0.705583756345178	14	6-19,2895-2882	1-5,2900-2896[UP5];20-21,2881-2880[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGGUGUGUGAUAUGUGUGUAG&AUAAUUACAUAUUAUAUAUAA	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN3258_c0_g1_2891_TPlot.pdf
TRINITY_DN3258_c0_g1:3481	si_s66	TRINITY_DN3258_c0_g1	3465	3490	3481	-26.30	-18.40	0.699619771863118	14	2-10,3489-3481;11-21,3475-3465	1-1,3490-3490[UP5];x-x,3480-3476[BULt]	(((((((((((.....(((((((((.&.)))))))))-----)))))))))))	AGAGAGAAAGUGACAGAGAAGUUGUG&AGCAACUUCU-----AUUUUUUUUCU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN3258_c0_g1_3481_TPlot.pdf
TRINITY_DN3258_c0_g1:3482	si_s65	TRINITY_DN3258_c0_g1	3466	3491	3482	-26.00	-17.10	0.657692307692308	15.5	3-11,3489-3481;12-21,3475-3466	1-2,3491-3490[UP5];x-x,3480-3476[BULt]	((((((((((.....(((((((((..&..)))))))))-----))))))))))	GAGAGAAAGUGACAGAGAAGUUGUGG&UAGCAACUUCU-----AUUUUUUUUC	3	0.999999963512878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN3258_c0_g1_3482_TPlot.pdf
TRINITY_DN3258_c0_g1:3617	si_a498	TRINITY_DN3258_c0_g1	3606	3626	3617	-33.50	-21.96	0.655522388059702	11.5	1-6,3626-3621;11-20,3616-3607	7-10,3620-3617[SIL];21-21,3606-3606[UP3]	.((((((((((....((((((&))))))....)))))))))).	GAAGGAAGGCGUCGUAUGGCA&UGUCGUUUUUCGUCUUCCUUG	2	0.999999999036237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3258_c0_g1_3617_TPlot.pdf
TRINITY_DN3258_c0_g1:5632	si_s482	TRINITY_DN3258_c0_g1	5618	5641	5632	-21.20	-14.34	0.676415094339623	7	1-13,5641-5629;15-20,5624-5619	14-14,5628-5625[AILt];21-21,5618-5618[UP3]	.((((((....(((((((((((((&)))))))))))))---.)))))).	UUAUUUAUGGUAUAGGUAUAGGAU&AUCCUAUAUUUAU---UUAAAUAU	4	0.999693963058563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN3258_c0_g1_5632_TPlot.pdf
TRINITY_DN3258_c19_g1:107	si_s75	TRINITY_DN3258_c19_g1	95	116	107	-24.00	-21.30	0.8875	5.5	1-15,116-102;16-21,100-95	x-x,101-101[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	AGAGAGAGAGAGAGAGAAAGUG&UAUUUUUUUUCUUUC-CUUUCU	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3258_c19_g1_107_TPlot.pdf
TRINITY_DN32598_c1_g1:225	si_s194	TRINITY_DN32598_c1_g1	214	234	225	-30.30	-21.10	0.696369636963696	10.5	4-7,231-228;9-20,226-215	1-3,234-232[UP5];8-8,227-227[SIL];21-21,214-214[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	AGGUGCAUUCCGAUAUGAAAC&CGAUUAUUUUGGAAUGUACCA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN32598_c1_g1_225_TPlot.pdf
TRINITY_DN3259_c0_g1:1137	si_s74	TRINITY_DN3259_c0_g1	1126	1146	1137	-25.00	-16.50	0.66	6.5	1-15,1146-1132;17-19,1130-1128	16-16,1131-1131[SIL];20-21,1127-1126[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AUGAGAAAAGAAGAAGAAUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3259_c0_g1_1137_TPlot.pdf
TRINITY_DN3259_c0_g1:1138	si_s73	TRINITY_DN3259_c0_g1	1127	1147	1138	-24.00	-16.70	0.695833333333333	6	1-16,1147-1132;18-20,1130-1128	17-17,1131-1131[SIL];21-21,1127-1127[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	UGAGAAAAGAAGAAGAAUGGG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3259_c0_g1_1138_TPlot.pdf
TRINITY_DN3259_c0_g1:1139	si_s72	TRINITY_DN3259_c0_g1	1128	1148	1139	-24.10	-17.10	0.70954356846473	6.5	2-17,1147-1132;19-21,1130-1128	1-1,1148-1148[UP5];18-18,1131-1131[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GAGAAAAGAAGAAGAAUGGGG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3259_c0_g1_1139_TPlot.pdf
TRINITY_DN3259_c0_g1:1142	si_s69	TRINITY_DN3259_c0_g1	1131	1151	1142	-23.40	-15.60	0.666666666666667	10.5	4-20,1148-1132	1-3,1151-1149[UP5];21-21,1131-1131[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAAGAAGAAGAAUGGGGAUA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3259_c0_g1_1142_TPlot.pdf
TRINITY_DN3259_c0_g1:1143	si_s68	TRINITY_DN3259_c0_g1	1132	1152	1143	-23.10	-15.60	0.675324675324675	11.5	5-21,1148-1132	1-4,1152-1149[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAAGAAGAAUGGGGAUAC&CAACUUCUAUUUUUUUUCUUU	2	0.9999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3259_c0_g1_1143_TPlot.pdf
TRINITY_DN3259_c0_g1:1144	si_s82	TRINITY_DN3259_c0_g1	1133	1153	1144	-28.90	-19.30	0.667820069204152	11	5-9,1149-1145;11-21,1143-1133	1-4,1153-1150[UP5];10-10,1144-1144[SIL]	(((((((((((.(((((....&....))))).)))))))))))	AAGAAGAAGAAUGGGGAUACA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3259_c0_g1_1144_TPlot.pdf
TRINITY_DN3259_c0_g1:1387	si_a551	TRINITY_DN3259_c0_g1	1373	1396	1387	-31.60	-20.90	0.661392405063291	8.5	2-6,1395-1391;8-15,1389-1382;16-21,1378-1373	1-1,1396-1396[UP5];7-7,1390-1390[SIL];x-x,1381-1379[BULt]	((((((...((((((((.(((((.&.))))).))))))))---))))))	GGGGGGUUUAUAGAGGACUAGAUC&AAUCUAUUUCUUUAU---CUCCCC	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3259_c0_g1_1387_TPlot.pdf
TRINITY_DN3259_c0_g1:302	si_a134	TRINITY_DN3259_c0_g1	288	311	302	-28.20	-18.80	0.666666666666667	9	1-13,311-299;17-21,292-288	14-16,298-293[AILt]	(((((......(((((((((((((&)))))))))))))---...)))))	ACAACCUCCUAUAGUUGCUGUUGC&GCAAUAGUAAUUA---AUCGUUGU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN3259_c0_g1_302_TPlot.pdf
TRINITY_DN3259_c0_g1:310	si_a126	TRINITY_DN3259_c0_g1	299	320	310	-24.70	-16.90	0.684210526315789	10.5	5-8,316-313;9-21,311-299	1-4,320-317[UP5];x-x,312-312[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	UAGUUGCUGUUGCAUAUAUUCG&GUUUUAUA-GCAAUAGUAAUUA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN3259_c0_g1_310_TPlot.pdf
TRINITY_DN3259_c0_g1:817	si_a407	TRINITY_DN3259_c0_g1	806	826	817	-19.80	-12.90	0.651515151515151	10	1-13,826-814	14-21,813-806[UP3]	........(((((((((((((&)))))))))))))........	GGUUUCUCAUAAGCAAAGCAA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3259_c0_g1_817_TPlot.pdf
TRINITY_DN3259_c0_g1:818	si_a406	TRINITY_DN3259_c0_g1	807	827	818	-19.80	-12.90	0.651515151515151	10	2-14,826-814	1-1,827-827[UP5];15-21,813-807[UP3]	.......(((((((((((((.&.))))))))))))).......	GUUUCUCAUAAGCAAAGCAAG&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3259_c0_g1_818_TPlot.pdf
TRINITY_DN3259_c0_g1:819	si_a405	TRINITY_DN3259_c0_g1	808	828	819	-19.80	-12.90	0.651515151515151	11	3-15,826-814	1-2,828-827[UP5];16-21,813-808[UP3]	......(((((((((((((..&..)))))))))))))......	UUUCUCAUAAGCAAAGCAAGA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3259_c0_g1_819_TPlot.pdf
TRINITY_DN3260_c0_g1:803	si_a118	TRINITY_DN3260_c0_g1	792	812	803	-30.70	-20.40	0.664495114006515	7.5	1-8,812-805;10-14,803-799;16-19,797-794	9-9,804-804[SIL];15-15,798-798[SIL];20-21,793-792[UP3]	..((((.(((((.((((((((&)))))))).))))).))))..	GCUGUUUUAGAAGAGGCUCGU&ACGAGCUUGUUUUAUAGCAAU	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN3260_c0_g1_803_TPlot.pdf
TRINITY_DN3260_c0_g1:808	si_a113	TRINITY_DN3260_c0_g1	797	817	808	-26.20	-17.80	0.679389312977099	11.5	5-13,813-805;15-19,803-799	1-4,817-814[UP5];14-14,804-804[SIL];20-21,798-797[UP3]	..(((((.(((((((((....&....))))))))).)))))..	UUUAGAAGAGGCUCGUAAACG&AAAAUACGAGCUUGUUUUAUA	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN3260_c0_g1_808_TPlot.pdf
TRINITY_DN3261_c0_g1:1656	si_s86	TRINITY_DN3261_c0_g1	1645	1665	1656	-32.90	-21.40	0.650455927051672	14.5	8-20,1658-1646	1-7,1665-1659[UP5];21-21,1645-1645[UP3]	.(((((((((((((.......&.......))))))))))))).	UGCGAGGAAGAAGACUGUCAA&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3261_c0_g1_1656_TPlot.pdf
TRINITY_DN3261_c0_g1:1782	si_a634	TRINITY_DN3261_c0_g1	1772	1791	1782	-26.40	-17.80	0.674242424242424	8.5	1-12,1791-1780;15-19,1778-1774	13-14,1779-1779[AILq];20-21,1773-1772[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	AGGCUCAC-GAAGUUGACGUA&UAUGUCGAUUUUUUUGAGUAA	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN3261_c0_g1_1782_TPlot.pdf
TRINITY_DN3261_c0_g1:1783	si_a633	TRINITY_DN3261_c0_g1	1773	1792	1783	-26.40	-18.00	0.681818181818182	8	2-13,1791-1780;16-20,1778-1774	1-1,1792-1792[UP5];14-15,1779-1779[AILq];21-21,1773-1773[UP3]	.(((((.-((((((((((((.&.))))))))))))..))))).	GGCUCAC-GAAGUUGACGUAG&UUAUGUCGAUUUUUUUGAGUA	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3261_c0_g1_1783_TPlot.pdf
TRINITY_DN32628_c0_g1:108	si_s73	TRINITY_DN32628_c0_g1	97	120	108	-24.00	-16.30	0.679166666666667	11	1-8,120-113;9-15,109-103;17-21,101-97	x-x,112-110[BULt];16-16,102-102[SIL]	(((((.(((((((...((((((((&))))))))---))))))).)))))	AAGGGUGAGAAAAGGCGAGGUAGA&UCUAUUUU---UUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN32628_c0_g1_108_TPlot.pdf
TRINITY_DN3262_c0_g2:2372	si_a391	TRINITY_DN3262_c0_g2	2362	2381	2372	-22.80	-16.30	0.714912280701754	5.5	1-15,2381-2367;17-20,2366-2363	16-16,x-x[BULq];21-21,2362-2362[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	UGCAG-UUUAUGUUCUUGAUU&AAUUAAGAAUAUAGAAUUGUU	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN3262_c0_g2_2372_TPlot.pdf
TRINITY_DN3262_c0_g2:2373	si_a390	TRINITY_DN3262_c0_g2	2363	2382	2373	-24.80	-16.60	0.669354838709677	5.5	2-16,2381-2367;18-21,2366-2363	1-1,2382-2382[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	GCAG-UUUAUGUUCUUGAUUA&GAAUUAAGAAUAUAGAAUUGU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a390_TRINITY_DN3262_c0_g2_2373_TPlot.pdf
TRINITY_DN3262_c1_g1:1043	si_a477	TRINITY_DN3262_c1_g1	1032	1052	1043	-21.50	-15.80	0.734883720930233	12.5	5-18,1048-1035	1-4,1052-1049[UP5];19-21,1034-1032[UP3]	...((((((((((((((....&....))))))))))))))...	AAAUCUGUAUAGCAGUAGACU&UAAUUAUUGUUAUAUAGAAUA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN3262_c1_g1_1043_TPlot.pdf
TRINITY_DN3262_c1_g1:1516	si_a551	TRINITY_DN3262_c1_g1	1505	1525	1516	-31.60	-20.70	0.65506329113924	7.5	3-13,1523-1513;15-19,1511-1507	1-2,1525-1524[UP5];14-14,1512-1512[SIL];20-21,1506-1505[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	AUGGAGAAGAAGAAGUAGAAC&AAUCUAUUUCUUUAUCUCCCC	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3262_c1_g1_1516_TPlot.pdf
TRINITY_DN3262_c1_g1:1517	si_a550	TRINITY_DN3262_c1_g1	1506	1526	1517	-30.90	-20.70	0.669902912621359	8.5	4-14,1523-1513;16-20,1511-1507	1-3,1526-1524[UP5];15-15,1512-1512[SIL];21-21,1506-1506[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	UGGAGAAGAAGAAGUAGAACA&CAAUCUAUUUCUUUAUCUCCC	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN3262_c1_g1_1517_TPlot.pdf
TRINITY_DN3262_c1_g1:2636	si_a453	TRINITY_DN3262_c1_g1	2625	2645	2636	-21.10	-14.60	0.691943127962085	13	6-18,2640-2628	1-5,2645-2641[UP5];19-21,2627-2625[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAAAUAUAUGACAACAGAAAG&AUAAUUGUUGUUAUAUAUAAU	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN3262_c1_g1_2636_TPlot.pdf
TRINITY_DN3262_c1_g1:2870	si_a546	TRINITY_DN3262_c1_g1	2859	2879	2870	-28.60	-19.20	0.671328671328671	5	2-6,2878-2874;8-18,2872-2862;20-21,2860-2859	1-1,2879-2879[UP5];7-7,2873-2873[SIL];19-19,2861-2861[SIL]	((.(((((((((((.(((((.&.))))).))))))))))).))	GAAAAAGAAAUGGAAUGAACA&GGUUCAAUCUAUUUCUUUAUC	2	0.974879224210294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN3262_c1_g1_2870_TPlot.pdf
TRINITY_DN3262_c1_g1:2974	si_s809	TRINITY_DN3262_c1_g1	2962	2984	2974	-28.50	-19.00	0.666666666666667	9.5	1-5,2984-2980;6-12,2978-2972;13-18,2970-2965	x-x,2979-2979[BULt];x-x,2971-2971[BULt];19-21,2964-2962[UP3]	...((((((.(((((((.(((((&)))))-)))))))-))))))...	CCAAAGAGAUGGGUAGCAGAAGA&UCUUC-GUUACCU-UUUCUUAAU	3	0.999999996974839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3262_c1_g1_2974_TPlot.pdf
TRINITY_DN3263_c0_g2:1192	si_a704	TRINITY_DN3263_c0_g2	1181	1201	1192	-29.30	-19.70	0.672354948805461	10	3-14,1199-1188	1-2,1201-1200[UP5];15-21,1187-1181[UP3]	.......((((((((((((..&..)))))))))))).......	UGGUACAUGGAAUGUACCAAG&ACUGGUACAUUCCAAAAUAAU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN3263_c0_g2_1192_TPlot.pdf
TRINITY_DN3263_c0_g2:3324	si_a254	TRINITY_DN3263_c0_g2	3305	3333	3324	-38.80	-25.50	0.657216494845361	21.5	1-11,3333-3323;12-18,3314-3308	x-x,3322-3315[BULt];19-21,3307-3305[UP3]	...(((((((........(((((((((((&)))))))))))--------)))))))...	UAGGCCCUUGUCCUAAACAUGCAAUUGGG&CCCGAUUGUAU--------CGAGGGCAAA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN3263_c0_g2_3324_TPlot.pdf
TRINITY_DN3263_c0_g2:5786	si_a363	TRINITY_DN3263_c0_g2	5775	5795	5786	-26.40	-18.70	0.708333333333333	12	4-15,5792-5781	1-3,5795-5793[UP5];16-21,5780-5775[UP3]	......((((((((((((...&...))))))))))))......	AUCUGCGAUCCGAUCAAGCAC&UAUUUUGAUCGGAUCAAAAAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN3263_c0_g2_5786_TPlot.pdf
TRINITY_DN3263_c0_g2:5787	si_a362	TRINITY_DN3263_c0_g2	5776	5796	5787	-28.00	-18.70	0.667857142857143	13	5-16,5792-5781	1-4,5796-5793[UP5];17-21,5780-5776[UP3]	.....((((((((((((....&....)))))))))))).....	UCUGCGAUCCGAUCAAGCACA&CUAUUUUGAUCGGAUCAAAAA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN3263_c0_g2_5787_TPlot.pdf
TRINITY_DN3263_c0_g2:6559	si_s582	TRINITY_DN3263_c0_g2	6548	6568	6559	-22.50	-14.70	0.653333333333333	15.5	7-17,6562-6552	1-6,6568-6563[UP5];18-21,6551-6548[UP3]	....(((((((((((......&......)))))))))))....	GUUAGUCCAUGAUUUGGAAUG&AUAAAAAAAUCAUGGAUAAAU	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN3263_c0_g2_6559_TPlot.pdf
TRINITY_DN32640_c0_g1:253	si_s89	TRINITY_DN32640_c0_g1	241	262	253	-35.30	-23.60	0.668555240793201	10.5	1-6,262-257;9-11,254-252;12-21,250-241	7-8,256-255[SIL];x-x,251-251[BULt]	((((((((((.(((..((((((&))))))..)))-))))))))))	CGGAGCGAAGUGAGCCGGGGGG&CCUUUCUUCUU-CUUCGCUUCG	4	0.999999999999927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN32640_c0_g1_253_TPlot.pdf
TRINITY_DN3264_c1_g2:2424	si_a496	TRINITY_DN3264_c1_g2	2414	2433	2424	-32.40	-21.90	0.675925925925926	6	1-13,2433-2421;15-19,2420-2416	14-14,x-x[BULq];20-21,2415-2414[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AAGAAGA-GAAAGACGGCGUA&UAUGUCGUUUUUCGUCUUCCU	2	0.999989872352742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3264_c1_g2_2424_TPlot.pdf
TRINITY_DN3264_c1_g2:2509	si_s73	TRINITY_DN3264_c1_g2	2498	2518	2509	-24.00	-15.90	0.6625	9.5	1-3,2518-2516;6-15,2513-2504;17-21,2502-2498	4-5,2515-2514[SIL];16-16,2503-2503[SIL]	(((((.((((((((((..(((&)))..)))))))))).)))))	GAAGGCAAGAGAGGAAUCGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3264_c1_g2_2509_TPlot.pdf
TRINITY_DN3264_c1_g2:2561	si_a190	TRINITY_DN3264_c1_g2	2550	2573	2561	-32.00	-21.80	0.68125	13.5	3-6,2571-2568;7-18,2564-2553	1-2,2573-2572[UP5];x-x,2567-2565[BULt];19-21,2552-2550[UP3]	...((((((((((((...((((..&..))))---))))))))))))...	GGCAGUGGACAGGGAUACAGGACA&UAUCUU---UCCCUGUUCACUAAU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN3264_c1_g2_2561_TPlot.pdf
TRINITY_DN3264_c1_g2:2563	si_a188	TRINITY_DN3264_c1_g2	2552	2575	2563	-32.00	-21.80	0.68125	15.5	5-8,2571-2568;9-20,2564-2553	1-4,2575-2572[UP5];x-x,2567-2565[BULt];21-21,2552-2552[UP3]	.((((((((((((...((((....&....))))---)))))))))))).	CAGUGGACAGGGAUACAGGACAUA&AAUAUCUU---UCCCUGUUCACUA	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN3264_c1_g2_2563_TPlot.pdf
TRINITY_DN32651_c0_g1:204	si_s634	TRINITY_DN32651_c0_g1	193	214	204	-38.30	-25.50	0.66579634464752	9.5	1-9,214-206;10-14,204-200;16-19,198-195	x-x,205-205[BULt];15-15,199-199[SIL];20-21,194-193[UP3]	..((((.(((((.(((((((((&)))))))))-))))).))))..	GCGGGCCGGCGCUCUACGGGGG&UUUUCGUAG-GCGUUUGCCCUC	2	0.994829164283728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN32651_c0_g1_204_TPlot.pdf
TRINITY_DN32651_c0_g1:206	si_s633	TRINITY_DN32651_c0_g1	194	215	206	-37.90	-25.70	0.678100263852243	10	2-10,214-206;11-15,204-200;17-20,198-195	1-1,215-215[UP5];x-x,205-205[BULt];16-16,199-199[SIL];21-21,194-194[UP3]	.((((.(((((.(((((((((.&.)))))))))-))))).)))).	CGGGCCGGCGCUCUACGGGGGU&CUUUUCGUAG-GCGUUUGCCCU	2	0.969343840465523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN32651_c0_g1_206_TPlot.pdf
TRINITY_DN32651_c0_g1:207	si_s632	TRINITY_DN32651_c0_g1	195	218	207	-38.20	-25.60	0.670157068062827	12	1-3,218-216;4-11,213-206;12-16,204-200;18-21,198-195	x-x,215-214[BULt];x-x,205-205[BULt];17-17,199-199[SIL]	((((.(((((.((((((((..(((&)))--))))))))-))))).))))	GGGCCGGCGCUCUACGGGGGUGGA&UCU--UUUCGUAG-GCGUUUGCCC	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN32651_c0_g1_207_TPlot.pdf
TRINITY_DN32654_c0_g1:1056	si_s67	TRINITY_DN32654_c0_g1	1045	1066	1056	-25.60	-17.02	0.66484375	12	1-6,1066-1061;10-20,1056-1046	7-9,1060-1057[AILt];21-21,1045-1045[UP3]	.(((((((((((....((((((&))))))-...))))))))))).	UAGAGAGAAAGUUAUUGGUUGC&GCAACU-UCUAUUUUUUUUCUU	4	0.999999999996581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN32654_c0_g1_1056_TPlot.pdf
TRINITY_DN32654_c0_g1:1285	si_s209	TRINITY_DN32654_c0_g1	1274	1293	1285	-36.20	-24.90	0.687845303867403	6.5	1-5,1293-1289;7-11,1288-1284;13-13,1282-1282;15-21,1280-1274	6-6,x-x[BULq];12-12,1283-1283[SIL];14-14,1281-1281[SIL]	(((((((.(.(((((-(((((&))))).))))).).)))))))	GGUUUCGUGGGCAAC-GGUAC&GUACCAGUUGUGUUCGAAACC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN32654_c0_g1_1285_TPlot.pdf
TRINITY_DN32654_c0_g1:543	si_s319	TRINITY_DN32654_c0_g1	533	554	543	-31.30	-20.80	0.664536741214057	8	1-3,554-552;4-12,549-541;14-19,540-535	x-x,551-550[BULt];13-13,x-x[BULq];20-21,534-533[UP3]	..((((((-(((((((((..(((&)))--))))))))).))))))..	AAGUUUGU-ACAAGAAGGCUGCA&UGU--CCUUCUUGUUACAAACAU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN32654_c0_g1_543_TPlot.pdf
TRINITY_DN3266_c0_g1:373	si_a80	TRINITY_DN3266_c0_g1	362	382	373	-22.10	-14.90	0.67420814479638	6	1-14,382-369;17-19,366-364	15-16,368-367[SIL];20-21,363-362[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	AAUUCAAAAUGAUGGAAAACA&UGUUUUUCAUUAUUAAGAAAA	2	0.999024445860172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3266_c0_g1_373_TPlot.pdf
TRINITY_DN3268_c0_g1:3123	si_s701	TRINITY_DN3268_c0_g1	3113	3132	3123	-30.50	-20.20	0.662295081967213	8	2-12,3131-3121;14-17,3119-3116;19-21,3115-3113	1-1,3132-3132[UP5];13-13,3120-3120[SIL];18-18,x-x[BULq]	(((-((((.(((((((((((.&.))))))))))).)))).)))	CUG-UCACCAGUGGGUCGGCA&AGUCGAUUUAUUAGUGAACAG	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN3268_c0_g1_3123_TPlot.pdf
TRINITY_DN3268_c0_g1:3618	si_s389	TRINITY_DN3268_c0_g1	3600	3627	3618	-38.40	-28.80	0.75	16	1-10,3627-3618;11-16,3610-3605;18-21,3603-3600	x-x,3617-3611[BULt];17-17,3604-3604[SIL]	((((.((((((.......((((((((((&))))))))))-------)))))).))))	CUUCGUUGGAAGUCUAUCUGUGAGGCGG&CCGCCUUACA-------UUCCAAGGAAG	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s389_TRINITY_DN3268_c0_g1_3618_TPlot.pdf
TRINITY_DN32699_c0_g1:1078	si_s635	TRINITY_DN32699_c0_g1	1066	1087	1078	-39.80	-26.10	0.655778894472362	6.5	1-3,1087-1085;5-11,1083-1077;12-21,1075-1066	4-4,1084-1084[SIL];x-x,1076-1076[BULt]	((((((((((.(((((((.(((&))).)))))))-))))))))))	CGAGGGUAAAUUGCCUAUUAAA&UUUCGUAGGCG-UUUGCCCUCG	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN32699_c0_g1_1078_TPlot.pdf
TRINITY_DN32699_c0_g1:1377	si_a488	TRINITY_DN32699_c0_g1	1366	1386	1377	-26.40	-17.80	0.674242424242424	10.5	4-19,1383-1368	1-3,1386-1384[UP5];20-21,1367-1366[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCGAAACGACAUGUUUUGGCU&AUAUAGAAUAUGUCGUUUUUC	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN32699_c0_g1_1377_TPlot.pdf
TRINITY_DN32699_c0_g1:1379	si_a486	TRINITY_DN32699_c0_g1	1368	1388	1379	-24.90	-17.80	0.714859437751004	12.5	6-21,1383-1368	1-5,1388-1384[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAACGACAUGUUUUGGCUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN32699_c0_g1_1379_TPlot.pdf
TRINITY_DN32699_c0_g1:1517	si_s209	TRINITY_DN32699_c0_g1	1502	1526	1517	-36.20	-23.70	0.654696132596685	10.5	4-12,1523-1515;13-18,1513-1508;19-21,1504-1502	1-3,1526-1524[UP5];x-x,1514-1514[BULt];x-x,1507-1505[BULt]	(((...((((((.(((((((((...&...)))))))))-))))))---)))	GGUGUGUUCGGAUCACAACUGGGCU&GUACCAGUUGUG-UUCGAA---ACC	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN32699_c0_g1_1517_TPlot.pdf
TRINITY_DN32699_c0_g1:1520	si_s206	TRINITY_DN32699_c0_g1	1508	1529	1520	-33.00	-21.50	0.651515151515151	12.5	7-15,1523-1515;16-21,1513-1508	1-6,1529-1524[UP5];x-x,1514-1514[BULt]	((((((.(((((((((......&......)))))))))-))))))	UUCGGAUCACAACUGGGCUCAG&AAUGUACCAGUUGUG-UUCGAA	4	0.999888699892308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN32699_c0_g1_1520_TPlot.pdf
TRINITY_DN3269_c0_g2:1019	si_a468	TRINITY_DN3269_c0_g2	1008	1028	1019	-21.30	-14.30	0.671361502347418	9.5	5-17,1024-1012;19-20,1010-1009	1-4,1028-1025[UP5];18-18,1011-1011[SIL];21-21,1008-1008[UP3]	.((.(((((((((((((....&....))))))))))))).)).	AAAGGAUAAUUACAUAUGAUG&UAUAAUAUGUAAUUAUUGUUA	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN3269_c0_g2_1019_TPlot.pdf
TRINITY_DN3269_c0_g2:1021	si_a466	TRINITY_DN3269_c0_g2	1010	1030	1021	-21.50	-15.50	0.720930232558139	4.5	1-5,1030-1026;7-19,1024-1012;21-21,1010-1010	6-6,1025-1025[SIL];20-20,1011-1011[SIL]	(.(((((((((((((.(((((&))))).))))))))))))).)	AGGAUAAUUACAUAUGAUGUA&UAUAUAAUAUGUAAUUAUUGU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN3269_c0_g2_1021_TPlot.pdf
TRINITY_DN3269_c0_g2:1023	si_a464	TRINITY_DN3269_c0_g2	1012	1032	1023	-19.60	-17.20	0.877551020408163	3.5	1-7,1032-1026;9-21,1024-1012	8-8,1025-1025[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAUAAUUACAUAUGAUGUAUA&UAUAUAUAAUAUGUAAUUAUU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN3269_c0_g2_1023_TPlot.pdf
TRINITY_DN3269_c0_g2:1247	si_s706	TRINITY_DN3269_c0_g2	1236	1256	1247	-29.40	-20.20	0.687074829931973	5.5	1-19,1256-1238	20-21,1237-1236[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UAUUUUUGUUCACUGGUAAAU&AUUUAUUAGUGAACAGGGAAA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN3269_c0_g2_1247_TPlot.pdf
TRINITY_DN3269_c0_g2:1250	si_s703	TRINITY_DN3269_c0_g2	1239	1259	1250	-32.80	-22.60	0.689024390243902	6.5	3-21,1257-1239	1-2,1259-1258[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUUUGUUCACUGGUAAAUCAU&UCGAUUUAUUAGUGAACAGGG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s703_TRINITY_DN3269_c0_g2_1250_TPlot.pdf
TRINITY_DN3269_c0_g2:1251	si_s702	TRINITY_DN3269_c0_g2	1240	1260	1251	-32.20	-22.10	0.686335403726708	8	4-21,1257-1240	1-3,1260-1258[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUGUUCACUGGUAAAUCAUC&GUCGAUUUAUUAGUGAACAGG	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s702_TRINITY_DN3269_c0_g2_1251_TPlot.pdf
TRINITY_DN3269_c0_g2:1252	si_s701	TRINITY_DN3269_c0_g2	1241	1261	1252	-30.50	-22.20	0.727868852459016	6.5	1-2,1261-1260;5-21,1257-1241	3-4,1259-1258[SIL]	(((((((((((((((((..((&))..)))))))))))))))))	UUGUUCACUGGUAAAUCAUCU&AGUCGAUUUAUUAGUGAACAG	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN3269_c0_g2_1252_TPlot.pdf
TRINITY_DN3269_c0_g2:1253	si_s700	TRINITY_DN3269_c0_g2	1242	1262	1253	-29.20	-21.70	0.743150684931507	6.5	2-3,1261-1260;6-21,1257-1242	1-1,1262-1262[UP5];4-5,1259-1258[SIL]	((((((((((((((((..((.&.))..))))))))))))))))	UGUUCACUGGUAAAUCAUCUC&UAGUCGAUUUAUUAGUGAACA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN3269_c0_g2_1253_TPlot.pdf
TRINITY_DN3269_c0_g2:239	si_s190	TRINITY_DN3269_c0_g2	228	250	239	-28.00	-18.60	0.664285714285714	12	1-2,250-249;5-8,246-243;9-21,240-228	3-4,248-247[SIL];x-x,242-241[BULt]	(((((((((((((..((((..((&))..))))--)))))))))))))	ACGUUCCGAAGUACAGUCGCGGC&GUAACGAU--UAUUUUGGAAUGU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN3269_c0_g2_239_TPlot.pdf
TRINITY_DN3270_c0_g1:572	si_a318	TRINITY_DN3270_c0_g1	561	580	572	-22.50	-15.10	0.671111111111111	7.5	2-8,579-573;10-21,572-561	1-1,580-580[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	AUGAAAAGGUUA-GGAUGAGG&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999998918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3270_c0_g1_572_TPlot.pdf
TRINITY_DN3270_c0_g1:576	si_s805	TRINITY_DN3270_c0_g1	562	585	576	-28.60	-21.10	0.737762237762238	12	2-12,584-574;13-20,570-563	1-1,585-585[UP5];x-x,573-571[BULt];21-21,562-562[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	UGAAAAGGUUAGGAUGAGGAUGAG&UUUAUCUUCGUU---ACCUUUUCU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3270_c0_g1_576_TPlot.pdf
TRINITY_DN3271_c0_g1:399	si_a149	TRINITY_DN3271_c0_g1	387	408	399	-29.40	-20.60	0.700680272108844	8.5	1-4,408-405;6-10,403-399;11-19,397-389	5-5,404-404[SIL];x-x,398-398[BULt];20-21,388-387[UP3]	..(((((((((.(((((.((((&)))).)))))-)))))))))..	UGUGGCCUUAAUAACAGGAGCG&CGUUGUUGUU-UUAAGGUCAAU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN3271_c0_g1_399_TPlot.pdf
TRINITY_DN3274_c0_g1:1667	si_s92	TRINITY_DN3274_c0_g1	1656	1680	1667	-34.90	-24.18	0.692836676217765	13	2-9,1679-1672;11-21,1666-1656	1-1,1680-1680[UP5];10-10,1671-1667[AILt]	(((((((((((.....((((((((.&.))))))))----.)))))))))))	AUCUGGAGCGAUGCAUGAGGAAGAU&UUCUUCUUC----UUCGCUUCGGAU	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3274_c0_g1_1667_TPlot.pdf
TRINITY_DN3275_c0_g2:157	si_a322	TRINITY_DN3275_c0_g2	144	168	157	-27.00	-17.90	0.662962962962963	6.5	1-5,168-164;6-13,161-154;14-21,151-144	x-x,163-162[BULt];x-x,153-152[BULt]	((((((((..((((((((..(((((&)))))--))))))))--))))))))	AGGGAUAACUAAAAAUCAUAUGGAU&AUCCA--UGAUUUUU--UUAUUCCU	4	0.999999550347238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN3275_c0_g2_157_TPlot.pdf
TRINITY_DN3275_c8_g1:14	si_a231	TRINITY_DN3275_c8_g1	3	22	14	-26.90	-18.60	0.691449814126394	8.5	2-6,21-17;8-20,16-4	1-1,22-22[UP5];7-7,x-x[BULq];21-21,3-3[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	UUCGAGUUGGUUGU-GAGAUU&UGUUUCUAUAAUCAAUUCGAU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN3275_c8_g1_14_TPlot.pdf
TRINITY_DN32779_c0_g2:183	si_a9	TRINITY_DN32779_c0_g2	172	192	183	-29.60	-19.80	0.668918918918919	5	1-13,192-180;15-17,178-176	14-14,179-179[SIL];18-21,175-172[UP3]	....(((.(((((((((((((&))))))))))))).)))....	CCGUAUAUGCUUUCUCUUCAA&UUGAAGAGAAAGCCUAUUUAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN32779_c0_g2_183_TPlot.pdf
TRINITY_DN3277_c0_g1:262	si_a24	TRINITY_DN3277_c0_g1	251	272	262	-24.20	-16.20	0.669421487603306	7	2-5,271-268;6-10,266-262;12-21,260-251	1-1,272-272[UP5];x-x,267-267[BULt];11-11,261-261[SIL]	((((((((((.(((((.((((.&.))))-))))).))))))))))	GUCUUAGAACCAGAAGCUAAAC&AUUUA-UUUUUAGUUCUAAGAC	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN3277_c0_g1_262_TPlot.pdf
TRINITY_DN3277_c0_g1:684	si_a25	TRINITY_DN3277_c0_g1	672	693	684	-26.50	-18.40	0.694339622641509	13	5-10,689-684;11-21,682-672	1-4,693-690[UP5];x-x,683-683[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GGUCUUGGGGCAUAAGGACAGU&UUUAUUUUUA-GUUCUAAGACC	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN3277_c0_g1_684_TPlot.pdf
TRINITY_DN32785_c0_g1:311	si_s809	TRINITY_DN32785_c0_g1	299	320	311	-28.50	-19.70	0.691228070175439	6	2-13,319-308;14-17,306-303;19-21,301-299	1-1,320-320[UP5];x-x,307-307[BULt];18-18,302-302[SIL]	(((.((((.((((((((((((.&.))))))))))))-)))).)))	GUUUAGAACGAGGUGAUGAAGG&UCUUCGUUACCUU-UUCUUAAU	2	0.999229893489761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN32785_c0_g1_311_TPlot.pdf
TRINITY_DN3279_c0_g3:412	si_a414	TRINITY_DN3279_c0_g3	401	421	412	-18.10	-12.90	0.712707182320442	9.5	1-14,421-408	15-21,407-401[UP3]	.......((((((((((((((&)))))))))))))).......	AAAAAAAGUUUAAAUGUAAGC&GUUUAUAUUUAAAUAAAUAUA	2	0.946990870446739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN3279_c0_g3_412_TPlot.pdf
TRINITY_DN3279_c0_g3:413	si_a413	TRINITY_DN3279_c0_g3	402	422	413	-18.40	-13.90	0.755434782608696	8.5	1-15,422-408	16-21,407-402[UP3]	......(((((((((((((((&)))))))))))))))......	AAAAAAGUUUAAAUGUAAGCA&UGUUUAUAUUUAAAUAAAUAU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN3279_c0_g3_413_TPlot.pdf
TRINITY_DN3279_c0_g3:414	si_a412	TRINITY_DN3279_c0_g3	403	423	414	-18.30	-14.60	0.797814207650273	7.5	1-16,423-408	17-21,407-403[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAAGUUUAAAUGUAAGCAA&UUGUUUAUAUUUAAAUAAAUA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN3279_c0_g3_414_TPlot.pdf
TRINITY_DN3279_c0_g3:415	si_a411	TRINITY_DN3279_c0_g3	404	424	415	-17.90	-14.70	0.82122905027933	7.5	2-17,423-408	1-1,424-424[UP5];18-21,407-404[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAAGUUUAAAUGUAAGCAAC&UUUGUUUAUAUUUAAAUAAAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3279_c0_g3_415_TPlot.pdf
TRINITY_DN3279_c0_g3:416	si_a410	TRINITY_DN3279_c0_g3	405	425	416	-17.80	-14.70	0.825842696629213	8.5	3-18,423-408	1-2,425-424[UP5];19-21,407-405[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAGUUUAAAUGUAAGCAACA&UUUUGUUUAUAUUUAAAUAAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3279_c0_g3_416_TPlot.pdf
TRINITY_DN3279_c0_g3:417	si_a409	TRINITY_DN3279_c0_g3	406	426	417	-19.50	-14.70	0.753846153846154	9.5	4-19,423-408	1-3,426-424[UP5];20-21,407-406[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGUUUAAAUGUAAGCAACAA&GUUUUGUUUAUAUUUAAAUAA	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3279_c0_g3_417_TPlot.pdf
TRINITY_DN3279_c0_g3:419	si_a407	TRINITY_DN3279_c0_g3	408	426	419	-19.80	-14.80	0.747474747474748	6	1-4,426-423;7-21,422-408	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GUUUAAAUGUAAGCA--ACAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3279_c0_g3_419_TPlot.pdf
TRINITY_DN3279_c1_g1:77	si_s437	TRINITY_DN3279_c1_g1	66	87	77	-19.70	-14.10	0.715736040609137	4.5	1-5,87-83;6-11,81-76;13-21,74-66	x-x,82-82[BULt];12-12,75-75[SIL]	(((((((((.((((((.(((((&)))))-)))))).)))))))))	UUAUGUAUAUUAUGUAUAUUAU&AUAAU-UACAUAUUAUAUAUAA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN3279_c1_g1_77_TPlot.pdf
TRINITY_DN3279_c1_g1:78	si_s436	TRINITY_DN3279_c1_g1	67	88	78	-19.60	-13.40	0.683673469387755	4.5	2-6,87-83;7-12,81-76;14-21,74-67	1-1,88-88[UP5];x-x,82-82[BULt];13-13,75-75[SIL]	((((((((.((((((.(((((.&.)))))-)))))).))))))))	UAUGUAUAUUAUGUAUAUUAUA&AAUAAU-UACAUAUUAUAUAUA	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN3279_c1_g1_78_TPlot.pdf
TRINITY_DN3279_c1_g2:840	si_s319	TRINITY_DN3279_c1_g2	829	852	840	-31.30	-21.20	0.677316293929712	10.5	2-5,851-848;6-16,844-834;18-21,832-829	1-1,852-852[UP5];x-x,847-845[BULt];17-17,833-833[SIL]	((((.(((((((((((...((((.&.))))---))))))))))).))))	GUGUAUGUAACAGGGACCCGGACC&UGUCC---UUCUUGUUACAAACAU	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN3279_c1_g2_840_TPlot.pdf
TRINITY_DN327_c0_g1:760	si_s674	TRINITY_DN327_c0_g1	748	769	760	-27.60	-18.60	0.673913043478261	5	1-12,769-758;15-17,755-753;18-21,751-748	13-14,757-756[SIL];x-x,752-752[BULt]	((((.(((..((((((((((((&))))))))))))..)))-))))	ACUCAAUGGCUUUAUGAUCAAU&AUUGAUUAUAGAAACAU-GAGU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s674_TRINITY_DN327_c0_g1_760_TPlot.pdf
TRINITY_DN3282_c0_g1:2894	si_s681	TRINITY_DN3282_c0_g1	2883	2903	2894	-25.10	-16.60	0.661354581673307	7	1-5,2903-2899;7-17,2897-2887	6-6,2898-2898[SIL];18-21,2886-2883[UP3]	....(((((((((((.(((((&))))).)))))))))))....	GAAAUGAAUUCAUGUAUCUAU&AUAGAAACAUGAGUUUAAUUA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN3282_c0_g1_2894_TPlot.pdf
TRINITY_DN3282_c0_g1:2895	si_s680	TRINITY_DN3282_c0_g1	2884	2904	2895	-25.10	-17.40	0.693227091633466	6.5	1-6,2904-2899;8-18,2897-2887	7-7,2898-2898[SIL];19-21,2886-2884[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	AAAUGAAUUCAUGUAUCUAUG&UAUAGAAACAUGAGUUUAAUU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN3282_c0_g1_2895_TPlot.pdf
TRINITY_DN3282_c0_g1:2896	si_s679	TRINITY_DN3282_c0_g1	2885	2905	2896	-25.20	-17.40	0.69047619047619	7	2-7,2904-2899;9-19,2897-2887	1-1,2905-2905[UP5];8-8,2898-2898[SIL];20-21,2886-2885[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AAUGAAUUCAUGUAUCUAUGU&UUAUAGAAACAUGAGUUUAAU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN3282_c0_g1_2896_TPlot.pdf
TRINITY_DN3282_c0_g1:724	si_s808	TRINITY_DN3282_c0_g1	711	733	724	-28.60	-19.70	0.688811188811189	8.5	2-13,732-721;14-17,718-715	1-1,733-733[UP5];x-x,720-719[BULt];18-21,714-711[UP3]	....((((..((((((((((((.&.))))))))))))--))))....	CCUUGAAACUGGGUAACGAGGAG&AUCUUCGUUACCU--UUUCUUAA	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3282_c0_g1_724_TPlot.pdf
TRINITY_DN32831_c0_g1:463	si_s896	TRINITY_DN32831_c0_g1	451	472	463	-31.60	-21.40	0.677215189873418	8	3-13,470-460;15-21,457-451	1-2,472-471[UP5];14-14,459-458[AILt]	(((((((..(((((((((((..&..)))))))))))-.)))))))	UGGAGUUCUAGGAGAAGGCCGG&UAGGCUUUCUCUU-CAAUUUCA	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN32831_c0_g1_463_TPlot.pdf
TRINITY_DN32836_c0_g1:1031	si_a364	TRINITY_DN32836_c0_g1	1020	1040	1031	-27.70	-18.30	0.660649819494585	12	3-14,1038-1027	1-2,1040-1039[UP5];15-21,1026-1020[UP3]	.......((((((((((((..&..)))))))))))).......	GAUCGGCGAUCCGAUCAGGCA&AUUUUGAUCGGAUCAAAAAUG	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN32836_c0_g1_1031_TPlot.pdf
TRINITY_DN32836_c0_g1:1033	si_a362	TRINITY_DN32836_c0_g1	1022	1042	1033	-28.00	-18.30	0.653571428571429	14	5-16,1038-1027	1-4,1042-1039[UP5];17-21,1026-1022[UP3]	.....((((((((((((....&....)))))))))))).....	UCGGCGAUCCGAUCAGGCAAC&CUAUUUUGAUCGGAUCAAAAA	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN32836_c0_g1_1033_TPlot.pdf
TRINITY_DN32836_c0_g1:370	si_a788	TRINITY_DN32836_c0_g1	359	379	370	-24.80	-16.70	0.673387096774194	11	3-8,377-372;10-19,370-361	1-2,379-378[UP5];9-9,371-371[SIL];20-21,360-359[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	CAGGGAAGUGGACAAGUGGUC&UUCUAUUUUUCUAUUUUCCAA	3	0.999999999991466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN32836_c0_g1_370_TPlot.pdf
TRINITY_DN32836_c0_g1:798	si_s528	TRINITY_DN32836_c0_g1	788	809	798	-29.40	-19.40	0.659863945578231	9	2-5,808-805;6-16,802-792;18-21,791-788	1-1,809-809[UP5];x-x,804-803[BULt];17-17,x-x[BULq]	((((-(((((((((((..((((.&.))))--))))))))))).))))	CGGA-CGGAAGUGGUUCGUCGAG&UUCGA--AAUCAUUUUUGAUCCG	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN32836_c0_g1_798_TPlot.pdf
TRINITY_DN3284_c0_g1:4237	si_s818	TRINITY_DN3284_c0_g1	4226	4248	4237	-23.70	-15.48	0.653164556962025	10	1-5,4248-4244;8-21,4239-4226	6-7,4243-4240[AILt]	((((((((((((((....(((((&)))))--..))))))))))))))	UUUUUCAUUAUUGACACUAGAGG&CCUUU--UCUUAAUAAUGAAAAA	2	0.989873797618439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN3284_c0_g1_4237_TPlot.pdf
TRINITY_DN3285_c0_g1:4064	si_s76	TRINITY_DN3285_c0_g1	4053	4073	4064	-23.60	-15.40	0.652542372881356	6.5	2-4,4072-4070;6-18,4068-4056	1-1,4073-4073[UP5];5-5,4069-4069[SIL];19-21,4055-4053[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	AUAAGAGGAAAGAAAAUAAAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3285_c0_g1_4064_TPlot.pdf
TRINITY_DN3285_c0_g1:4067	si_s73	TRINITY_DN3285_c0_g1	4056	4075	4067	-24.00	-15.90	0.6625	5	1-3,4075-4073;5-7,4072-4070;9-21,4068-4056	4-4,x-x[BULq];8-8,4069-4069[SIL]	(((((((((((((.(((-(((&))).))).)))))))))))))	AGAGGAAAGAAAAUAAA-AGG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3285_c0_g1_4067_TPlot.pdf
TRINITY_DN3286_c0_g1:3655	si_a792	TRINITY_DN3286_c0_g1	3644	3664	3655	-27.60	-19.20	0.695652173913043	7	1-5,3664-3660;7-19,3658-3646	6-6,3659-3659[SIL];20-21,3645-3644[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AUGAUUGGAAAAUGGCGAGAU&AUUUUUCUAUUUUCCAAUCCG	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3286_c0_g1_3655_TPlot.pdf
TRINITY_DN3286_c0_g1:3657	si_a790	TRINITY_DN3286_c0_g1	3646	3666	3657	-25.80	-20.70	0.802325581395349	6	2-7,3665-3660;9-21,3658-3646	1-1,3666-3666[UP5];8-8,3659-3659[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GAUUGGAAAAUGGCGAGAUAA&CUAUUUUUCUAUUUUCCAAUC	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN3286_c0_g1_3657_TPlot.pdf
TRINITY_DN3286_c0_g1:3659	si_a788	TRINITY_DN3286_c0_g1	3648	3669	3659	-24.80	-17.40	0.701612903225806	7.5	1-4,3669-3666;5-9,3664-3660;11-21,3658-3648	x-x,3665-3665[BULt];10-10,3659-3659[SIL]	(((((((((((.(((((.((((&))))-))))).)))))))))))	UUGGAAAAUGGCGAGAUAAGAG&UUCU-AUUUUUCUAUUUUCCAA	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3286_c0_g1_3659_TPlot.pdf
TRINITY_DN3286_c0_g1:3661	si_a786	TRINITY_DN3286_c0_g1	3650	3671	3661	-26.60	-18.60	0.699248120300752	8.5	2-6,3670-3666;7-11,3664-3660;13-21,3658-3650	1-1,3671-3671[UP5];x-x,3665-3665[BULt];12-12,3659-3659[SIL]	(((((((((.(((((.(((((.&.)))))-))))).)))))))))	GGAAAAUGGCGAGAUAAGAGGG&UCUUCU-AUUUUUCUAUUUUCC	3	0.999999811949203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3286_c0_g1_3661_TPlot.pdf
TRINITY_DN3286_c0_g4:779	si_a76	TRINITY_DN3286_c0_g4	768	788	779	-21.20	-14.00	0.660377358490566	8	1-4,788-785;6-18,783-771	5-5,784-784[SIL];19-21,770-768[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CACAGUGAUGAGAAGCCAUUU&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999999421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3286_c0_g4_779_TPlot.pdf
TRINITY_DN3286_c0_g4:883	si_s429	TRINITY_DN3286_c0_g4	872	892	883	-21.10	-14.80	0.701421800947867	10.5	5-18,888-875	1-4,892-889[UP5];19-21,874-872[UP3]	...((((((((((((((....&....))))))))))))))...	UGAGUGUAAUUAUUGUUCCAA&AUAUAACAAUAAUUACAUAUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN3286_c0_g4_883_TPlot.pdf
TRINITY_DN32875_c0_g2:1150	si_a406	TRINITY_DN32875_c0_g2	1138	1159	1150	-19.80	-13.80	0.696969696969697	6.5	1-12,1159-1148;15-21,1144-1138	13-14,1147-1145[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	UUUAAGUCGGAGACAAAACGAU&AUUGUUUUGUUU-AUAUUUAAA	4	0.999999999998731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN32875_c0_g2_1150_TPlot.pdf
TRINITY_DN3289_c0_g1:1268	si_a804	TRINITY_DN3289_c0_g1	1253	1276	1268	-37.20	-25.50	0.685483870967742	11.5	1-5,1276-1272;7-10,1271-1268;11-20,1263-1254	6-6,x-x[BULq];x-x,1267-1264[BULt];21-21,1253-1253[UP3]	.((((((((((....((((-(((((&))))).))))----)))))))))).	ACUUCUUCGCUAAACUCGG-UUGGG&UCCAAUCCGA----AGCGAAGAAGA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN3289_c0_g1_1268_TPlot.pdf
TRINITY_DN3289_c0_g1:1394	si_s797	TRINITY_DN3289_c0_g1	1383	1402	1394	-30.00	-20.62	0.687333333333333	9	1-6,1402-1397;11-17,1393-1387;19-21,1385-1383	7-10,1396-1394[AILq];18-18,1386-1386[SIL]	(((.(((((((...-((((((&))))))....))))))).)))	UAAGGAAGAUAUGG-ACGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3289_c0_g1_1394_TPlot.pdf
TRINITY_DN3289_c0_g1:1427	si_a500	TRINITY_DN3289_c0_g1	1414	1442	1427	-34.40	-22.70	0.659883720930233	16.5	1-8,1442-1435;9-13,1428-1424;14-20,1421-1415	x-x,1434-1429[BULt];x-x,1423-1422[BULt];21-21,1414-1414[UP3]	.(((((((..(((((......((((((((&))))))))------)))))--))))))).	GCCGAGGAAAAGACGUUUUUAGAAAACGA&UCGUUUUU------CGUCU--UCCUUGGA	3	0.99999999945869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3289_c0_g1_1427_TPlot.pdf
TRINITY_DN3289_c0_g1:367	si_a643	TRINITY_DN3289_c0_g1	356	377	367	-28.30	-19.60	0.692579505300353	8	2-8,376-370;9-15,368-362;18-21,359-356	1-1,377-377[UP5];x-x,369-369[BULt];16-17,361-360[SIL]	((((..(((((((.(((((((.&.)))))))-)))))))..))))	CCCGUGAUAUUACGUCAGGGAC&UUUUUUGA-GUAAUAUAUCGGG	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN3289_c0_g1_367_TPlot.pdf
TRINITY_DN328_c0_g1:1727	si_a17	TRINITY_DN328_c0_g1	1716	1736	1727	-24.30	-16.80	0.691358024691358	12	4-17,1733-1720	1-3,1736-1734[UP5];18-21,1719-1716[UP3]	....((((((((((((((...&...))))))))))))))....	AAGAAGAAGUAGAUGGGCACU&AAAGCCUAUUUAUUUUUAGUU	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN328_c0_g1_1727_TPlot.pdf
TRINITY_DN328_c0_g1:1866	si_a789	TRINITY_DN328_c0_g1	1855	1874	1866	-24.80	-16.50	0.665322580645161	5	1-3,1874-1872;5-11,1871-1865;13-21,1863-1855	4-4,x-x[BULq];12-12,1864-1864[SIL]	(((((((((.(((((((-(((&))).))))))).)))))))))	AUUGGAAAAAAGAAAGA-AGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999999999992029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN328_c0_g1_1866_TPlot.pdf
TRINITY_DN328_c0_g1:2613	si_s74	TRINITY_DN328_c0_g1	2602	2619	2613	-25.00	-16.40	0.656	9.5	1-4,2619-2616;8-18,2615-2605;20-21,2603-2602	5-7,x-x[BULq];19-19,2604-2604[SIL]	((.(((((((((((---((((&))))...))))))))))).))	GAUAGGAGAGAAAA---GUGG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN328_c0_g1_2613_TPlot.pdf
TRINITY_DN328_c1_g1:2503	si_a68	TRINITY_DN328_c1_g1	2487	2512	2503	-25.40	-17.20	0.677165354330709	7	1-13,2512-2500;14-18,2494-2490;20-21,2488-2487	x-x,2499-2495[BULt];19-19,2489-2489[SIL]	((.(((((.....(((((((((((((&)))))))))))))-----))))).))	UGCGAAACUUUAAGAUUUGAAAGAAG&CUUCUUUCAAAUU-----GUUUUUCA	3	0.999999998448973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN328_c1_g1_2503_TPlot.pdf
TRINITY_DN328_c1_g1:2574	si_a467	TRINITY_DN328_c1_g1	2562	2583	2574	-21.10	-13.80	0.654028436018957	8.5	2-11,2582-2573;13-20,2570-2563	1-1,2583-2583[UP5];12-12,2572-2571[AILt];21-21,2562-2562[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	UACGGUGAUCCACAUAUUGUAA&AUAUAAUAUGU-AAUUAUUGUU	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN328_c1_g1_2574_TPlot.pdf
TRINITY_DN328_c1_g1:2807	si_a547	TRINITY_DN328_c1_g1	2796	2816	2807	-26.90	-19.50	0.724907063197026	6.5	1-8,2816-2809;10-11,2807-2806;13-21,2804-2796	9-9,2808-2808[SIL];12-12,2805-2805[SIL]	(((((((((.((.((((((((&)))))))).)).)))))))))	AGGUGGAGAUAUCGAUUGGAC&GUUCAAUCUAUUUCUUUAUCU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN328_c1_g1_2807_TPlot.pdf
TRINITY_DN328_c1_g1:2808	si_a546	TRINITY_DN328_c1_g1	2797	2817	2808	-28.60	-18.60	0.65034965034965	6.5	2-9,2816-2809;11-12,2807-2806;14-21,2804-2797	1-1,2817-2817[UP5];10-10,2808-2808[SIL];13-13,2805-2805[SIL]	((((((((.((.((((((((.&.)))))))).)).))))))))	GGUGGAGAUAUCGAUUGGACG&GGUUCAAUCUAUUUCUUUAUC	3	0.999956421867691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN328_c1_g1_2808_TPlot.pdf
TRINITY_DN328_c1_g1:3035	si_s199	TRINITY_DN328_c1_g1	3024	3044	3035	-31.20	-20.80	0.666666666666667	7	1-5,3044-3040;7-11,3038-3034;13-21,3032-3024	6-6,3039-3039[SIL];12-12,3033-3033[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	ACAACUGGUUUAUUUGGAAAU&AUUUUGGAAUGUACCAGUUGU	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN328_c1_g1_3035_TPlot.pdf
TRINITY_DN328_c1_g1:3181	si_a639	TRINITY_DN328_c1_g1	3166	3190	3181	-23.60	-18.40	0.779661016949152	7.5	1-13,3190-3178;14-21,3173-3166	x-x,3177-3174[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	AUGUAUUAGACCCUCAGAAAGGUCG&CGAUUUUUUUGAG----UAAUAUAU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN328_c1_g1_3181_TPlot.pdf
TRINITY_DN328_c1_g1:3182	si_a638	TRINITY_DN328_c1_g1	3167	3191	3182	-24.40	-17.20	0.704918032786885	8.5	2-14,3190-3178;15-21,3173-3167	1-1,3191-3191[UP5];x-x,3177-3174[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	UGUAUUAGACCCUCAGAAAGGUCGU&UCGAUUUUUUUGAG----UAAUAUA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN328_c1_g1_3182_TPlot.pdf
TRINITY_DN328_c1_g1:3183	si_a637	TRINITY_DN328_c1_g1	3168	3193	3183	-25.80	-17.00	0.65891472868217	10.5	1-2,3193-3192;3-15,3190-3178;16-21,3173-3168	x-x,3191-3191[BULt];x-x,3177-3174[BULt]	((((((....(((((((((((((.((&))-)))))))))))))----))))))	GUAUUAGACCCUCAGAAAGGUCGUGC&GU-CGAUUUUUUUGAG----UAAUAU	4	0.999999999925919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN328_c1_g1_3183_TPlot.pdf
TRINITY_DN328_c1_g1:3185	si_a635	TRINITY_DN328_c1_g1	3174	3195	3185	-26.10	-17.50	0.670498084291188	10.5	1-4,3195-3192;5-17,3190-3178	x-x,3191-3191[BULt];18-21,3177-3174[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	GACCCUCAGAAAGGUCGUGCGU&AUGU-CGAUUUUUUUGAGUAAU	3	0.999999998707314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN328_c1_g1_3185_TPlot.pdf
TRINITY_DN328_c1_g1:3187	si_a633	TRINITY_DN328_c1_g1	3176	3197	3187	-26.40	-17.50	0.662878787878788	11.5	3-6,3195-3192;7-19,3190-3178	1-2,3197-3196[UP5];x-x,3191-3191[BULt];20-21,3177-3176[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	CCCUCAGAAAGGUCGUGCGUUG&UUAUGU-CGAUUUUUUUGAGUA	3	0.999999999500795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN328_c1_g1_3187_TPlot.pdf
TRINITY_DN328_c1_g1:3188	si_a632	TRINITY_DN328_c1_g1	3177	3198	3188	-26.10	-17.50	0.670498084291188	12.5	4-7,3195-3192;8-20,3190-3178	1-3,3198-3196[UP5];x-x,3191-3191[BULt];21-21,3177-3177[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	CCUCAGAAAGGUCGUGCGUUGU&AUUAUGU-CGAUUUUUUUGAGU	3	0.999999909265911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN328_c1_g1_3188_TPlot.pdf
TRINITY_DN328_c1_g1:3189	si_a631	TRINITY_DN328_c1_g1	3178	3199	3189	-25.70	-17.20	0.669260700389105	13	5-8,3195-3192;9-21,3190-3178	1-4,3199-3196[UP5];x-x,3191-3191[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	CUCAGAAAGGUCGUGCGUUGUU&UAUUAUGU-CGAUUUUUUUGAG	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN328_c1_g1_3189_TPlot.pdf
TRINITY_DN328_c1_g1:3553	si_s546	TRINITY_DN328_c1_g1	3542	3562	3553	-26.20	-17.20	0.656488549618321	9	1-7,3562-3556;9-17,3554-3546	8-8,3555-3555[SIL];18-21,3545-3542[UP3]	....(((((((((.(((((((&))))))).)))))))))....	CCAAGAUUUUGUUCUGGUCGG&CCGAUCAAAAUAGAAUUAAUA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN328_c1_g1_3553_TPlot.pdf
TRINITY_DN328_c1_g1:3554	si_s545	TRINITY_DN328_c1_g1	3543	3563	3554	-26.80	-18.80	0.701492537313433	8	1-8,3563-3556;10-18,3554-3546	9-9,3555-3555[SIL];19-21,3545-3543[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CAAGAUUUUGUUCUGGUCGGA&UCCGAUCAAAAUAGAAUUAAU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s545_TRINITY_DN328_c1_g1_3554_TPlot.pdf
TRINITY_DN328_c1_g1:3555	si_s544	TRINITY_DN328_c1_g1	3544	3564	3555	-26.90	-18.80	0.698884758364312	7.5	2-9,3563-3556;11-19,3554-3546	1-1,3564-3564[UP5];10-10,3555-3555[SIL];20-21,3545-3544[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AAGAUUUUGUUCUGGUCGGAG&AUCCGAUCAAAAUAGAAUUAA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN328_c1_g1_3555_TPlot.pdf
TRINITY_DN328_c1_g1:3556	si_s543	TRINITY_DN328_c1_g1	3545	3565	3556	-28.80	-18.80	0.652777777777778	8.5	3-10,3563-3556;12-20,3554-3546	1-2,3565-3564[UP5];11-11,3555-3555[SIL];21-21,3545-3545[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	AGAUUUUGUUCUGGUCGGAGA&GAUCCGAUCAAAAUAGAAUUA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN328_c1_g1_3556_TPlot.pdf
TRINITY_DN328_c1_g1:3570	si_s82	TRINITY_DN328_c1_g1	3559	3579	3570	-28.90	-20.20	0.698961937716263	7.5	2-12,3578-3568;15-19,3565-3561	1-1,3579-3579[UP5];13-14,3567-3566[SIL];20-21,3560-3559[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	UCGGAGAUCAGAGGAGAGAAU&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN328_c1_g1_3570_TPlot.pdf
TRINITY_DN328_c1_g1:3571	si_s81	TRINITY_DN328_c1_g1	3560	3580	3571	-28.90	-20.20	0.698961937716263	8.5	3-13,3578-3568;16-20,3565-3561	1-2,3580-3579[UP5];14-15,3567-3566[SIL];21-21,3560-3560[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	CGGAGAUCAGAGGAGAGAAUG&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN328_c1_g1_3571_TPlot.pdf
TRINITY_DN328_c1_g1:3572	si_s80	TRINITY_DN328_c1_g1	3561	3581	3572	-28.20	-19.90	0.705673758865248	9	4-14,3578-3568;17-21,3565-3561	1-3,3581-3579[UP5];15-16,3567-3566[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	GGAGAUCAGAGGAGAGAAUGU&UUUUUCUUUCCUUUCUUCUUC	2	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN328_c1_g1_3572_TPlot.pdf
TRINITY_DN328_c1_g1:3573	si_s79	TRINITY_DN328_c1_g1	3562	3582	3573	-26.20	-17.50	0.66793893129771	11	5-15,3578-3568;18-21,3565-3562	1-4,3582-3579[UP5];16-17,3567-3566[SIL]	((((..(((((((((((....&....)))))))))))..))))	GAGAUCAGAGGAGAGAAUGUA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN328_c1_g1_3573_TPlot.pdf
TRINITY_DN328_c1_g1:3574	si_s78	TRINITY_DN328_c1_g1	3560	3583	3574	-26.20	-17.10	0.652671755725191	15	6-15,3578-3569;16-20,3565-3561	1-5,3583-3579[UP5];x-x,3568-3566[BULt];21-21,3560-3560[UP3]	.(((((...((((((((((.....&.....))))))))))---))))).	CGGAGAUCAGAGGAGAGAAUGUAA&UUUUUUUCUUUCCUU---UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN328_c1_g1_3574_TPlot.pdf
TRINITY_DN328_c1_g1:3575	si_s77	TRINITY_DN328_c1_g1	3561	3584	3575	-25.50	-16.80	0.658823529411765	16	7-16,3578-3569;17-21,3565-3561	1-6,3584-3579[UP5];x-x,3568-3566[BULt]	(((((...((((((((((......&......))))))))))---)))))	GGAGAUCAGAGGAGAGAAUGUAAU&UUUUUUUUCUUUCCUU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN328_c1_g1_3575_TPlot.pdf
TRINITY_DN328_c1_g1:3610	si_a321	TRINITY_DN328_c1_g1	3598	3619	3610	-26.70	-18.02	0.674906367041199	8	1-12,3619-3608;16-21,3603-3598	13-15,3607-3604[AILt]	((((((....((((((((((((&))))))))))))-...))))))	GGAAUACCCCGGAUUAUGGAUA&UAUCCAUGAUUU-UUUUAUUCC	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN328_c1_g1_3610_TPlot.pdf
TRINITY_DN328_c1_g1:3762	si_s74	TRINITY_DN328_c1_g1	3751	3771	3762	-25.00	-16.40	0.656	12	5-20,3767-3752	1-4,3771-3768[UP5];21-21,3751-3751[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAAGGAAAGGGAAGAGUCAC&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN328_c1_g1_3762_TPlot.pdf
TRINITY_DN328_c1_g1:3764	si_s77	TRINITY_DN328_c1_g1	3753	3773	3764	-25.50	-17.30	0.67843137254902	14.5	7-20,3767-3754	1-6,3773-3768[UP5];21-21,3753-3753[UP3]	.((((((((((((((......&......)))))))))))))).	AAGGAAAGGGAAGAGUCACAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN328_c1_g1_3764_TPlot.pdf
TRINITY_DN328_c1_g1:3766	si_s75	TRINITY_DN328_c1_g1	3755	3775	3766	-24.00	-16.50	0.6875	17	9-21,3767-3755	1-8,3775-3768[UP5]	(((((((((((((........&........)))))))))))))	GGAAAGGGAAGAGUCACAACA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN328_c1_g1_3766_TPlot.pdf
TRINITY_DN328_c1_g1:5079	si_a304	TRINITY_DN328_c1_g1	5068	5091	5079	-30.40	-20.20	0.664473684210526	12	3-5,5089-5087;7-9,5085-5083;10-21,5079-5068	1-2,5091-5090[UP5];6-6,5086-5086[SIL];x-x,5082-5080[BULt]	((((((((((((...(((.(((..&..))).)))---))))))))))))	GAUAAAUCCAGGUAACGAUUCUCG&AAAGAUUCG---CUUGGAUUUAUC	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN328_c1_g1_5079_TPlot.pdf
TRINITY_DN328_c2_g2:2662	si_s3	TRINITY_DN328_c2_g2	2652	2671	2662	-21.20	-14.10	0.665094339622642	6	1-11,2671-2661;15-21,2658-2652	12-14,2660-2659[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	AGUGGUAUC-AGUGAUAUAAA&UUUAUAUUACUUAUUAUUACU	3	0.999947712872037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN328_c2_g2_2662_TPlot.pdf
TRINITY_DN328_c2_g2:2680	si_a411	TRINITY_DN328_c2_g2	2669	2690	2680	-17.90	-11.80	0.659217877094972	8	2-5,2689-2686;6-18,2684-2672	1-1,2690-2690[UP5];x-x,2685-2685[BULt];19-21,2671-2669[UP3]	...(((((((((((((.((((.&.))))-)))))))))))))...	AAAUAUUUAAAUGUAAUGCAAU&UUUGU-UUAUAUUUAAAUAAAU	4	0.999999999994615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN328_c2_g2_2680_TPlot.pdf
TRINITY_DN328_c2_g2:2681	si_a410	TRINITY_DN328_c2_g2	2670	2691	2681	-17.80	-11.80	0.662921348314607	9	3-6,2689-2686;7-19,2684-2672	1-2,2691-2690[UP5];x-x,2685-2685[BULt];20-21,2671-2670[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	AAUAUUUAAAUGUAAUGCAAUA&UUUUGU-UUAUAUUUAAAUAAA	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN328_c2_g2_2681_TPlot.pdf
TRINITY_DN328_c2_g2:35	si_a318	TRINITY_DN328_c2_g2	24	44	35	-22.50	-15.70	0.697777777777778	8.5	2-10,43-35;13-21,32-24	1-1,44-44[UP5];11-12,34-33[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	AUGAGAGAAAAGUGGGUAAAA&AUUUAUCCAUGAUUUUUUUAU	4	0.999999946359056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN328_c2_g2_35_TPlot.pdf
TRINITY_DN328_c2_g2:66	si_a838	TRINITY_DN328_c2_g2	55	75	66	-26.50	-19.50	0.735849056603774	9	5-14,71-62;16-20,60-56	1-4,75-72[UP5];15-15,61-61[SIL];21-21,55-55[UP3]	.(((((.((((((((((....&....)))))))))).))))).	UGUUAGGAACUUCUAUUGAUA&AAAAAAUAGAAGUUGCUAACU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN328_c2_g2_66_TPlot.pdf
TRINITY_DN32907_c0_g3:582	si_a145	TRINITY_DN32907_c0_g3	571	591	582	-28.10	-18.80	0.669039145907473	10	4-7,588-585;9-14,583-578;16-21,576-571	1-3,591-589[UP5];8-8,584-584[SIL];15-15,577-577[SIL]	((((((.((((((.((((...&...)))).)))))).))))))	GCCUUGUAACAACCGCGAGGG&UAAUCGUUGUUGUUUUAAGGU	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN32907_c0_g3_582_TPlot.pdf
TRINITY_DN32907_c0_g3:650	si_s793	TRINITY_DN32907_c0_g3	638	658	650	-30.50	-20.60	0.675409836065574	7	1-7,658-652;9-10,651-650;12-21,647-638	8-8,x-x[BULq];11-11,649-648[AILt]	((((((((((..((-(((((((&))))))).))-.))))))))))	GAAGAUAAAAGGGC-AGCUUGU&ACAAGCUCGU-AUUUUAUCUUC	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN32907_c0_g3_650_TPlot.pdf
TRINITY_DN3290_c0_g3:255	si_s633	TRINITY_DN3290_c0_g3	240	264	255	-37.90	-25.40	0.670184696569921	11.5	2-16,263-249;17-20,244-241	1-1,264-264[UP5];x-x,248-245[BULt];21-21,240-240[UP3]	.((((....(((((((((((((((.&.)))))))))))))))----)))).	UGGGCUGUAGGGCGUCUGCGGAAGC&CUUUUCGUAGGCGUUU----GCCCU	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN3290_c0_g3_255_TPlot.pdf
TRINITY_DN3291_c0_g1:599	si_a510	TRINITY_DN3291_c0_g1	586	608	599	-37.00	-25.56	0.690810810810811	11.5	1-10,608-599;14-20,593-587	11-13,598-594[AILt];21-21,586-586[UP3]	.(((((((.....((((((((((&))))))))))--...))))))).	GGCCUUGCCGAAGUCAAGGAAGA&UCUUCCUUGG--AAUGUAAGGCG	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN3291_c0_g1_599_TPlot.pdf
TRINITY_DN3291_c0_g1:600	si_a509	TRINITY_DN3291_c0_g1	587	609	600	-37.30	-24.96	0.66916890080429	10.5	2-11,608-599;15-21,593-587	1-1,609-609[UP5];12-14,598-594[AILt]	(((((((.....((((((((((.&.))))))))))--...)))))))	GCCUUGCCGAAGUCAAGGAAGAA&GUCUUCCUUGG--AAUGUAAGGC	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN3291_c0_g1_600_TPlot.pdf
TRINITY_DN3291_c0_g1:609	si_s69	TRINITY_DN3291_c0_g1	594	618	609	-23.40	-15.30	0.653846153846154	8.5	2-16,617-603;17-20,598-595	1-1,618-618[UP5];x-x,602-599[BULt];21-21,594-594[UP3]	.((((....(((((((((((((((.&.)))))))))))))))----)))).	CGAAGUCAAGGAAGAAAUAGAAGUG&AACUUCUAUUUUUUUU----CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3291_c0_g1_609_TPlot.pdf
TRINITY_DN3291_c0_g1:610	si_s68	TRINITY_DN3291_c0_g1	595	619	610	-23.10	-15.30	0.662337662337662	9	3-17,617-603;18-21,598-595	1-2,619-618[UP5];x-x,602-599[BULt]	((((....(((((((((((((((..&..)))))))))))))))----))))	GAAGUCAAGGAAGAAAUAGAAGUGC&CAACUUCUAUUUUUUUU----CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3291_c0_g1_610_TPlot.pdf
TRINITY_DN3291_c0_g1:611	si_s67	TRINITY_DN3291_c0_g1	601	619	611	-25.60	-17.20	0.671875	4	1-3,619-617;5-17,616-604;19-21,603-601	4-4,x-x[BULq];18-18,x-x[BULq]	(((-(((((((((((((-(((&))).))))))))))))).)))	AAG-GAAGAAAUAGAAG-UGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999999871404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3291_c0_g1_611_TPlot.pdf
TRINITY_DN3291_c0_g1:612	si_s66	TRINITY_DN3291_c0_g1	601	620	612	-26.30	-17.30	0.657794676806084	6.5	2-4,619-617;6-19,616-603	1-1,620-620[UP5];5-5,x-x[BULq];20-21,602-601[UP3]	..((((((((((((((-(((.&.))).))))))))))))))..	AAGGAAGAAAUAGAAG-UGCC&AGCAACUUCUAUUUUUUUUCU	3	0.999999999699057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN3291_c0_g1_612_TPlot.pdf
TRINITY_DN3291_c0_g1:613	si_s65	TRINITY_DN3291_c0_g1	602	621	613	-26.00	-17.30	0.665384615384615	7.5	3-5,619-617;7-20,616-603	1-2,621-620[UP5];6-6,x-x[BULq];21-21,602-602[UP3]	.((((((((((((((-(((..&..))).)))))))))))))).	AGGAAGAAAUAGAAG-UGCCU&UAGCAACUUCUAUUUUUUUUC	3	0.9999995509213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN3291_c0_g1_613_TPlot.pdf
TRINITY_DN3291_c0_g1:615	si_s63	TRINITY_DN3291_c0_g1	604	624	615	-25.80	-20.70	0.802325581395349	6	1-5,624-620;8-21,617-604	6-7,619-618[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GAAGAAAUAGAAGUGCCUGAC&GUUAGCAACUUCUAUUUUUUU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN3291_c0_g1_615_TPlot.pdf
TRINITY_DN3291_c0_g1:616	si_s62	TRINITY_DN3291_c0_g1	605	625	616	-26.50	-19.40	0.732075471698113	6.5	2-6,624-620;9-21,617-605	1-1,625-625[UP5];7-8,619-618[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	AAGAAAUAGAAGUGCCUGACG&AGUUAGCAACUUCUAUUUUUU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN3291_c0_g1_616_TPlot.pdf
TRINITY_DN3291_c0_g1:617	si_s61	TRINITY_DN3291_c0_g1	606	626	617	-26.50	-18.50	0.69811320754717	8.5	3-7,624-620;10-21,617-606	1-2,626-625[UP5];8-9,619-618[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	AGAAAUAGAAGUGCCUGACGU&AAGUUAGCAACUUCUAUUUUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN3291_c0_g1_617_TPlot.pdf
TRINITY_DN3291_c0_g1:618	si_s60	TRINITY_DN3291_c0_g1	607	627	618	-28.20	-18.60	0.659574468085106	7.5	1-2,627-626;4-8,624-620;11-21,617-607	3-3,625-625[SIL];9-10,619-618[SIL]	(((((((((((..(((((.((&)).)))))..)))))))))))	GAAAUAGAAGUGCCUGACGUG&CAAGUUAGCAACUUCUAUUUU	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN3291_c0_g1_618_TPlot.pdf
TRINITY_DN3291_c0_g1:681	si_s43	TRINITY_DN3291_c0_g1	670	688	681	-25.50	-16.60	0.650980392156863	7	1-4,688-685;7-19,684-672	5-6,x-x[BULq];20-21,671-670[UP3]	..(((((((((((((--((((&))))..)))))))))))))..	GAUGAAAUCCAAUUA--GAAG&CUUUAAUAAUUGGAUUUCAAG	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN3291_c0_g1_681_TPlot.pdf
TRINITY_DN3291_c0_g1:682	si_s42	TRINITY_DN3291_c0_g1	671	689	682	-24.90	-16.60	0.666666666666667	7	2-5,688-685;8-20,684-672	1-1,689-689[UP5];6-7,x-x[BULq];21-21,671-671[UP3]	.(((((((((((((--((((.&.))))..))))))))))))).	AUGAAAUCCAAUUA--GAAGC&UCUUUAAUAAUUGGAUUUCAA	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN3291_c0_g1_682_TPlot.pdf
TRINITY_DN3291_c0_g1:683	si_s41	TRINITY_DN3291_c0_g1	672	690	683	-25.00	-16.40	0.656	8	3-6,688-685;9-21,684-672	1-2,690-689[UP5];7-8,x-x[BULq]	(((((((((((((--((((..&..))))..)))))))))))))	UGAAAUCCAAUUA--GAAGCC&AUCUUUAAUAAUUGGAUUUCA	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN3291_c0_g1_683_TPlot.pdf
TRINITY_DN3291_c1_g1:129	si_a510	TRINITY_DN3291_c1_g1	116	138	129	-37.00	-24.06	0.65027027027027	12.5	1-10,138-129;14-20,123-117	11-13,128-124[AILt];21-21,116-116[UP3]	.(((((((.....((((((((((&))))))))))--...))))))).	GGCCUUGCUGAAGUUAAGGAAGA&UCUUCCUUGG--AAUGUAAGGCG	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN3291_c1_g1_129_TPlot.pdf
TRINITY_DN3292_c0_g1:1125	si_s286	TRINITY_DN3292_c0_g1	1112	1134	1125	-35.20	-23.90	0.678977272727273	9.5	3-14,1132-1121;16-20,1117-1113	1-2,1134-1133[UP5];15-15,1120-1118[AILt];21-21,1112-1112[UP3]	.(((((...((((((((((((..&..))))))))))))--.))))).	CUCCGACAACGACUAGGUGUGCC&AAUACGCCUAGUCG--AUUGGAA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN3292_c0_g1_1125_TPlot.pdf
TRINITY_DN3292_c0_g1:1132	si_s279	TRINITY_DN3292_c0_g1	1121	1145	1132	-36.40	-27.06	0.743406593406593	15.5	2-7,1144-1139;10-21,1132-1121	1-1,1145-1145[UP5];8-9,1138-1133[AILt]	((((((((((((......((((((.&.))))))----..))))))))))))	CGACUAGGUGUGCCGUUGGUGUCGG&UCGACAU----AAUACGCCUAGUCG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s279_TRINITY_DN3292_c0_g1_1132_TPlot.pdf
TRINITY_DN3292_c0_g1:1757	si_a22	TRINITY_DN3292_c0_g1	1746	1765	1757	-23.50	-15.50	0.659574468085106	10.5	1-5,1765-1761;7-18,1760-1749	6-6,x-x[BULq];19-21,1748-1746[UP3]	...((((((((((((-(((((&))))).))))))))))))...	CGCAGAGCUGGAGAU-GAUGG&CUAUUUAUUUUUAGUUCUAAG	3	0.999997540575938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN3292_c0_g1_1757_TPlot.pdf
TRINITY_DN3292_c0_g1:365	si_s25	TRINITY_DN3292_c0_g1	354	374	365	-27.10	-18.10	0.66789667896679	8	1-4,374-371;7-11,368-364;13-21,362-354	5-6,370-369[SIL];12-12,363-363[SIL]	(((((((((.(((((..((((&))))..))))).)))))))))	AGGAUUUAGAUGCAAGAGAUG&UAUUGAUUGCAACUAAAUCUU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN3292_c0_g1_365_TPlot.pdf
TRINITY_DN3292_c0_g1:845	si_a404	TRINITY_DN3292_c0_g1	834	854	845	-21.70	-14.20	0.654377880184332	9.5	1-5,854-850;7-14,848-841;16-20,839-835	6-6,849-849[SIL];15-15,840-840[SIL];21-21,834-834[UP3]	.(((((.((((((((.(((((&))))).)))))))).))))).	GAGAUGAAGACGAAGGGGUUC&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3292_c0_g1_845_TPlot.pdf
TRINITY_DN3293_c0_g1:1040	si_a898	TRINITY_DN3293_c0_g1	1029	1049	1040	-20.50	-14.00	0.682926829268293	6	1-10,1049-1040;13-21,1037-1029	11-12,1039-1038[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	UUUUGUAUUUAUUAUUGUUAU&GUAAUAAUAAGUAAUAUAAAA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN3293_c0_g1_1040_TPlot.pdf
TRINITY_DN3293_c0_g1:986	si_a285	TRINITY_DN3293_c0_g1	975	994	986	-28.30	-18.70	0.660777385159011	9.5	2-9,993-986;11-15,985-981	1-1,994-994[UP5];10-10,x-x[BULq];16-21,980-975[UP3]	......(((((-((((((((.&.)))))))).)))))......	GAUGAUGAUCC-AGCGAUCUA&AAGAUCGCUUGGAUUUAAAAA	4	0.999949203849064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN3293_c0_g1_986_TPlot.pdf
TRINITY_DN3294_c0_g1:2907	si_a302	TRINITY_DN3294_c0_g1	2896	2916	2907	-28.20	-19.70	0.698581560283688	13.5	5-16,2912-2901	1-4,2916-2913[UP5];17-21,2900-2896[UP3]	.....((((((((((((....&....)))))))))))).....	UGGCGCCGAGCGGAUCUCGUC&AAAAAGAUUCGCUUGGAUUUA	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN3294_c0_g1_2907_TPlot.pdf
TRINITY_DN3294_c0_g1:2908	si_a301	TRINITY_DN3294_c0_g1	2897	2917	2908	-27.80	-19.70	0.70863309352518	14.5	6-17,2912-2901	1-5,2917-2913[UP5];18-21,2900-2897[UP3]	....((((((((((((.....&.....))))))))))))....	GGCGCCGAGCGGAUCUCGUCA&AAAAAAGAUUCGCUUGGAUUU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN3294_c0_g1_2908_TPlot.pdf
TRINITY_DN3294_c0_g1:4480	si_a626	TRINITY_DN3294_c0_g1	4470	4489	4480	-30.20	-19.70	0.652317880794702	10	2-10,4488-4480;12-15,4479-4476	1-1,4489-4489[UP5];11-11,x-x[BULq];16-21,4475-4470[UP3]	......((((-(((((((((.&.))))))))).))))......	CGGGACCGAC-UGAUACGCCC&AGGCGUAUUAUGUCGAUUUUU	2	0.999543407832817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN3294_c0_g1_4480_TPlot.pdf
TRINITY_DN3294_c0_g1:4482	si_a624	TRINITY_DN3294_c0_g1	4472	4492	4482	-32.30	-21.10	0.653250773993808	8	1-5,4492-4488;6-12,4486-4480;14-17,4479-4476	x-x,4487-4487[BULt];13-13,x-x[BULq];18-21,4475-4472[UP3]	....((((-(((((((.(((((&)))))-))))))).))))....	GGACCGAC-UGAUACGCCCUAG&CUAGG-CGUAUUAUGUCGAUUU	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN3294_c0_g1_4482_TPlot.pdf
TRINITY_DN32956_c0_g1:486	si_a763	TRINITY_DN32956_c0_g1	475	495	486	-28.80	-19.60	0.680555555555556	8.5	1-8,495-488;10-15,486-481;18-21,478-475	9-9,487-487[SIL];16-17,480-479[SIL]	((((..((((((.((((((((&)))))))).))))))..))))	UGAGGAGGUCGAUAACCCGGA&UUUGGGUUUUUGAUUGAUUCA	4	0.999998012315855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN32956_c0_g1_486_TPlot.pdf
TRINITY_DN3295_c0_g1:1105	si_s338	TRINITY_DN3295_c0_g1	1093	1113	1105	-35.60	-23.70	0.665730337078652	9	1-9,1113-1105;11-12,1104-1103;13-17,1101-1097	10-10,x-x[BULq];x-x,1102-1102[BULt];18-21,1096-1093[UP3]	....(((((.((-(((((((((&))))))))).))-)))))....	UCUCCUCCCACG-GAGUCGUAU&AUACGAUUCACG-GGGAGAUAA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s338_TRINITY_DN3295_c0_g1_1105_TPlot.pdf
TRINITY_DN3295_c0_g1:510	si_a485	TRINITY_DN3295_c0_g1	499	519	510	-26.60	-17.60	0.661654135338346	9	1-3,519-517;6-18,514-502	4-5,516-515[SIL];19-21,501-499[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UUCUGGCAUAUUCUGUUCAAC&GUUAUAUAGAAUAUGUCGUUU	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN3295_c0_g1_510_TPlot.pdf
TRINITY_DN3295_c0_g1:513	si_a482	TRINITY_DN3295_c0_g1	502	522	513	-26.70	-17.60	0.659176029962547	11	4-6,519-517;9-21,514-502	1-3,522-520[UP5];7-8,516-515[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	UGGCAUAUUCUGUUCAACGUC&AUUGUUAUAUAGAAUAUGUCG	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN3295_c0_g1_513_TPlot.pdf
TRINITY_DN3295_c0_g1:514	si_a481	TRINITY_DN3295_c0_g1	503	523	514	-25.60	-16.80	0.65625	12.5	5-7,519-517;10-21,514-503	1-4,523-520[UP5];8-9,516-515[SIL]	((((((((((((..(((....&....)))..))))))))))))	GGCAUAUUCUGUUCAACGUCU&UAUUGUUAUAUAGAAUAUGUC	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN3295_c0_g1_514_TPlot.pdf
TRINITY_DN32960_c1_g1:50	si_a745	TRINITY_DN32960_c1_g1	34	59	50	-42.00	-29.10	0.692857142857143	14.5	1-10,59-50;11-15,44-40;17-21,38-34	x-x,49-45[BULt];16-16,39-39[SIL]	(((((.(((((.....((((((((((&))))))))))-----))))).)))))	AGAGGCGGUUUCCAGAGUGGUCAGGG&CCCUGGCCAU-----GAACCUCCUUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN32960_c1_g1_50_TPlot.pdf
TRINITY_DN32960_c1_g1:65	si_a789	TRINITY_DN32960_c1_g1	54	74	65	-24.80	-18.10	0.729838709677419	7	1-13,74-62;15-18,60-57	14-14,61-61[SIL];19-21,56-54[UP3]	...((((.(((((((((((((&))))))))))))).))))...	UCAGGGGCAUAGGAAGAUAGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN32960_c1_g1_65_TPlot.pdf
TRINITY_DN3296_c0_g1:1034	si_a728	TRINITY_DN3296_c0_g1	1023	1043	1034	-40.30	-27.70	0.687344913151365	7.5	2-10,1042-1034;12-16,1033-1029;17-21,1027-1023	1-1,1043-1043[UP5];11-11,x-x[BULq];x-x,1028-1028[BULt]	(((((.(((((-(((((((((.&.))))))))).)))))-)))))	GGGGGUUGGAG-UGCCUGGGUU&UACUCGGGCAUCUUUA-CCCCU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN3296_c0_g1_1034_TPlot.pdf
TRINITY_DN3296_c0_g1:1049	si_a792	TRINITY_DN3296_c0_g1	1038	1065	1049	-27.60	-19.10	0.692028985507246	16	1-8,1065-1058;9-21,1050-1038	x-x,1057-1051[BULt]	(((((((((((((.......((((((((&))))))))-------)))))))))))))	UGGGUUGGAAAAUUUUCCAAAGGAAAAU&AUUUUUCU-------AUUUUCCAAUCCG	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3296_c0_g1_1049_TPlot.pdf
TRINITY_DN3296_c0_g1:920	si_s808	TRINITY_DN3296_c0_g1	909	929	920	-28.60	-19.50	0.681818181818182	10.5	3-9,927-921;11-19,919-911	1-2,929-928[UP5];10-10,920-920[SIL];20-21,910-909[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	GAGAGAAGGGGAAACGGGGGA&AUCUUCGUUACCUUUUCUUAA	4	0.999999846289191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3296_c0_g1_920_TPlot.pdf
TRINITY_DN3296_c0_g1:924	si_a499	TRINITY_DN3296_c0_g1	913	933	924	-35.20	-22.90	0.650568181818182	8	1-12,933-922;14-19,920-915	13-13,921-921[SIL];20-21,914-913[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GAAGGGGAAACGGGGGACGAC&GUCGUUUUUCGUCUUCCUUGG	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3296_c0_g1_924_TPlot.pdf
TRINITY_DN3297_c0_g1:1056	si_s96	TRINITY_DN3297_c0_g1	1045	1070	1056	-37.20	-24.30	0.653225806451613	15.5	1-8,1070-1063;11-20,1055-1046	9-10,1062-1056[AILt];21-21,1045-1045[UP3]	.((((((((((.......((((((((&))))))))-----..)))))))))).	ACCGAUCCGAAUUCCAUGGAAGAAGA&UCUUCUUC-----GCUUCGGAUUGGA	2	0.998684840499939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN3297_c0_g1_1056_TPlot.pdf
TRINITY_DN3297_c0_g1:1057	si_s95	TRINITY_DN3297_c0_g1	1046	1071	1057	-36.30	-25.00	0.68870523415978	14.5	1-9,1071-1063;12-21,1055-1046	10-11,1062-1056[AILt]	((((((((((.......(((((((((&)))))))))-----..))))))))))	CCGAUCCGAAUUCCAUGGAAGAAGAA&UUCUUCUUC-----GCUUCGGAUUGG	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN3297_c0_g1_1057_TPlot.pdf
TRINITY_DN3297_c0_g1:1156	si_s510	TRINITY_DN3297_c0_g1	1145	1165	1156	-24.80	-17.60	0.709677419354839	8.5	2-16,1164-1150	1-1,1165-1165[UP5];17-21,1149-1145[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCGCAAAGGAUGUAGAGUUGA&ACAAUUCUAUAUUCUUAAUUC	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN3297_c0_g1_1156_TPlot.pdf
TRINITY_DN3297_c0_g1:1158	si_s508	TRINITY_DN3297_c0_g1	1147	1167	1158	-22.80	-17.60	0.771929824561404	10.5	4-18,1164-1150	1-3,1167-1165[UP5];19-21,1149-1147[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCAAAGGAUGUAGAGUUGAAU&AAACAAUUCUAUAUUCUUAAU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN3297_c0_g1_1158_TPlot.pdf
TRINITY_DN3297_c0_g1:1159	si_s507	TRINITY_DN3297_c0_g1	1148	1168	1159	-22.70	-17.60	0.775330396475771	11	5-19,1164-1150	1-4,1168-1165[UP5];20-21,1149-1148[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAAGGAUGUAGAGUUGAAUU&AAAACAAUUCUAUAUUCUUAA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN3297_c0_g1_1159_TPlot.pdf
TRINITY_DN3297_c0_g1:1161	si_s505	TRINITY_DN3297_c0_g1	1150	1171	1161	-24.70	-18.70	0.757085020242915	7	2-5,1170-1167;7-21,1164-1150	1-1,1171-1171[UP5];6-6,1166-1165[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	AAGGAUGUAGAGUUGAAUUUGG&ACAAA-ACAAUUCUAUAUUCUU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN3297_c0_g1_1161_TPlot.pdf
TRINITY_DN3297_c0_g1:905	si_a140	TRINITY_DN3297_c0_g1	894	915	905	-25.20	-18.40	0.73015873015873	6	1-9,915-907;10-10,905-905;12-19,903-896	x-x,906-906[BULt];11-11,904-904[SIL];20-21,895-894[UP3]	..((((((((.(.(((((((((&)))))))))-).))))))))..	ACAACAACAAGGUAUUAAUUAC&GUAAUUAAU-CGUUGUUGUUUU	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN3297_c0_g1_905_TPlot.pdf
TRINITY_DN3297_c0_g1:907	si_a139	TRINITY_DN3297_c0_g1	895	916	907	-25.90	-18.50	0.714285714285714	6	2-10,915-907;11-11,905-905;13-20,903-896	1-1,916-916[UP5];x-x,906-906[BULt];12-12,904-904[SIL];21-21,895-895[UP3]	.((((((((.(.(((((((((.&.)))))))))-).)))))))).	CAACAACAAGGUAUUAAUUACA&AGUAAUUAAU-CGUUGUUGUUU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN3297_c0_g1_907_TPlot.pdf
TRINITY_DN3297_c0_g1:908	si_a138	TRINITY_DN3297_c0_g1	896	917	908	-26.30	-18.50	0.703422053231939	6	3-11,915-907;12-12,905-905;14-21,903-896	1-2,917-916[UP5];x-x,906-906[BULt];13-13,904-904[SIL]	((((((((.(.(((((((((..&..)))))))))-).))))))))	AACAACAAGGUAUUAAUUACAU&UAGUAAUUAAU-CGUUGUUGUU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN3297_c0_g1_908_TPlot.pdf
TRINITY_DN32999_c0_g1:63	si_s804	TRINITY_DN32999_c0_g1	48	72	63	-27.90	-18.60	0.666666666666667	17	5-10,68-63;11-21,58-48	1-4,72-69[UP5];x-x,62-59[BULt]	(((((((((((....((((((....&....))))))----)))))))))))	GGAGAGGUAACUAAAGAGGAUUUAA&UUUUAUCUUC----GUUACCUUUUC	4	0.999999999837681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN32999_c0_g1_63_TPlot.pdf
TRINITY_DN3299_c0_g1:1278	si_s890	TRINITY_DN3299_c0_g1	1267	1287	1278	-29.50	-21.80	0.738983050847458	16.5	9-21,1279-1267	1-8,1287-1280[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGAGGGCCGAGCAGGC&AAUAAAUAGGCUUUCUCUUCA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN3299_c0_g1_1278_TPlot.pdf
TRINITY_DN3299_c0_g1:1461	si_s533	TRINITY_DN3299_c0_g1	1450	1470	1461	-28.80	-20.10	0.697916666666667	9.5	2-17,1469-1454	1-1,1470-1470[UP5];18-21,1453-1450[UP3]	....((((((((((((((((.&.))))))))))))))))....	CCAUUUGGAUCAGAGGUGGUA&AAUCAUUUUUGAUCCGAUCAA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN3299_c0_g1_1461_TPlot.pdf
TRINITY_DN3299_c0_g1:3944	si_s307	TRINITY_DN3299_c0_g1	3933	3954	3944	-32.90	-21.80	0.662613981762918	8	1-4,3954-3951;5-10,3949-3944;13-21,3941-3933	x-x,3950-3950[BULt];11-12,3943-3942[SIL]	(((((((((..((((((.((((&))))-))))))..)))))))))	AGAGGGACACCGUUUUCGGCAG&UUGC-GAAAAUUCUGUCCUUCU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN3299_c0_g1_3944_TPlot.pdf
TRINITY_DN329_c0_g1:2007	si_a24	TRINITY_DN329_c0_g1	1994	2016	2007	-24.20	-16.20	0.669421487603306	6.5	1-4,2016-2013;6-18,2011-1999;19-21,1996-1994	5-5,2012-2012[SIL];x-x,1998-1997[BULt]	(((..(((((((((((((.((((&)))).)))))))))))))--)))	GUCCAUUGGAACUAAGAAGGAAU&AUUUAUUUUUAGUUCUAA--GAC	4	0.999871397437328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN329_c0_g1_2007_TPlot.pdf
TRINITY_DN329_c0_g1:465	si_a405	TRINITY_DN329_c0_g1	454	474	465	-19.80	-13.00	0.656565656565657	8	2-9,473-466;11-19,464-456	1-1,474-474[UP5];10-10,465-465[SIL];20-21,455-454[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UAGAGUAUAAAAGAAACGAUG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN329_c0_g1_465_TPlot.pdf
TRINITY_DN32_c0_g1:1545	si_s229	TRINITY_DN32_c0_g1	1534	1554	1545	-32.10	-21.00	0.654205607476635	9	1-13,1554-1542	14-21,1541-1534[UP3]	........(((((((((((((&)))))))))))))........	AUAACAAACCUUAUUCACGUG&CGCGUGAAUAAGGAAUCAAUA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s229_TRINITY_DN32_c0_g1_1545_TPlot.pdf
TRINITY_DN32_c0_g1:3096	si_s466	TRINITY_DN32_c0_g1	3085	3105	3096	-36.40	-26.00	0.714285714285714	6.5	2-7,3104-3099;9-19,3097-3087	1-1,3105-3105[UP5];8-8,3098-3098[SIL];20-21,3086-3085[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AAGAUCUGUUGGAGGUGAGAG&AUCUCAUAUCCAACGGAUCCU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s466_TRINITY_DN32_c0_g1_3096_TPlot.pdf
TRINITY_DN32_c0_g1:3597	si_a75	TRINITY_DN32_c0_g1	3586	3606	3597	-21.30	-15.60	0.732394366197183	8	1-14,3606-3593	15-21,3592-3586[UP3]	.......((((((((((((((&)))))))))))))).......	GCCAACUUGAAAAACGAUUUG&CAAAUUGUUUUUCAUUAUUAA	2	0.982048939284292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN32_c0_g1_3597_TPlot.pdf
TRINITY_DN32_c0_g1:3598	si_a74	TRINITY_DN32_c0_g1	3587	3607	3598	-22.20	-15.70	0.707207207207207	8	2-15,3606-3593	1-1,3607-3607[UP5];16-21,3592-3587[UP3]	......((((((((((((((.&.))))))))))))))......	CCAACUUGAAAAACGAUUUGG&UCAAAUUGUUUUUCAUUAUUA	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN32_c0_g1_3598_TPlot.pdf
TRINITY_DN32_c0_g1:3601	si_a71	TRINITY_DN32_c0_g1	3590	3610	3601	-23.30	-21.10	0.905579399141631	5	1-18,3610-3593	19-21,3592-3590[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACUUGAAAAACGAUUUGGAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN32_c0_g1_3601_TPlot.pdf
TRINITY_DN32_c0_g1:3602	si_a70	TRINITY_DN32_c0_g1	3591	3611	3602	-23.90	-22.70	0.949790794979079	4	1-19,3611-3593	20-21,3592-3591[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CUUGAAAAACGAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN32_c0_g1_3602_TPlot.pdf
TRINITY_DN32_c0_g1:3604	si_a68	TRINITY_DN32_c0_g1	3593	3613	3604	-25.40	-23.40	0.921259842519685	3.5	2-21,3612-3593	1-1,3613-3613[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	UGAAAAACGAUUUGGAAGAGA&CUUCUUUCAAAUUGUUUUUCA	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN32_c0_g1_3604_TPlot.pdf
TRINITY_DN32_c0_g1:3605	si_a67	TRINITY_DN32_c0_g1	3594	3614	3605	-27.20	-21.90	0.805147058823529	5.5	3-21,3612-3594	1-2,3614-3613[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAAAAACGAUUUGGAAGAGAC&GCUUCUUUCAAAUUGUUUUUC	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN32_c0_g1_3605_TPlot.pdf
TRINITY_DN32_c0_g1:4017	si_a757	TRINITY_DN32_c0_g1	4005	4026	4017	-33.10	-22.40	0.676737160120846	9	2-12,4025-4015;13-21,4013-4005	1-1,4026-4026[UP5];x-x,4014-4014[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	GAUCGGGAAGUUCAAGGGGGGG&ACCUCCUUUGGG-UUUUUGAUU	4	0.99999918180225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN32_c0_g1_4017_TPlot.pdf
TRINITY_DN32_c0_g1:6585	si_a500	TRINITY_DN32_c0_g1	6574	6593	6585	-34.40	-24.90	0.723837209302326	6	1-3,6593-6591;6-19,6589-6576;21-21,6574-6574	4-5,6590-6590[AILq];20-20,6575-6575[SIL]	(.((((((((((((((.-(((&)))..)))))))))))))).)	UGCAAGGAAGACGAAGU-CGA&UCGUUUUUCGUCUUCCUUGGA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN32_c0_g1_6585_TPlot.pdf
TRINITY_DN32_c0_g1:6589	si_a496	TRINITY_DN32_c0_g1	6578	6597	6589	-32.40	-23.10	0.712962962962963	9	3-7,6595-6591;10-21,6589-6578	1-2,6597-6596[UP5];8-9,6590-6590[AILq]	((((((((((((.-(((((..&..)))))..))))))))))))	AGGAAGACGAAGU-CGAUAAG&UAUGUCGUUUUUCGUCUUCCU	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN32_c0_g1_6589_TPlot.pdf
TRINITY_DN32_c0_g1:6854	si_s87	TRINITY_DN32_c0_g1	6843	6863	6854	-32.90	-21.40	0.650455927051672	7.5	4-16,6860-6848;18-20,6846-6844	1-3,6863-6861[UP5];17-17,6847-6847[SIL];21-21,6843-6843[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	CGGCAAAGAAGAAGAAAGUAC&UUCCUUUCUUCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN32_c0_g1_6854_TPlot.pdf
TRINITY_DN32_c0_g1:9134	si_s77	TRINITY_DN32_c0_g1	9122	9143	9134	-25.50	-17.60	0.690196078431373	7.5	2-13,9142-9131;14-19,9129-9124	1-1,9143-9143[UP5];x-x,9130-9130[BULt];20-21,9123-9122[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	ACAGAAGGCGGAAGAGAAAGAC&UUUUUUUUCUUUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN32_c0_g1_9134_TPlot.pdf
TRINITY_DN32_c0_g1:9136	si_s75	TRINITY_DN32_c0_g1	9124	9145	9136	-24.00	-17.60	0.733333333333333	9	4-15,9142-9131;16-21,9129-9124	1-3,9145-9143[UP5];x-x,9130-9130[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	AGAAGGCGGAAGAGAAAGACGA&UAUUUUUUUUCUUUC-CUUUCU	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN32_c0_g1_9136_TPlot.pdf
TRINITY_DN3300_c1_g1:173	si_a789	TRINITY_DN3300_c1_g1	162	183	173	-24.80	-16.60	0.669354838709677	9	1-3,183-181;5-11,178-172;13-21,170-162	4-4,180-179[AILt];12-12,171-171[SIL]	(((((((((.(((((((..(((&)))-.))))))).)))))))))	GUUGGGAAAAAGAGAGAAGAGA&UCU-AUUUUUCUAUUUUCCAAU	2	0.999999601771636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN3300_c1_g1_173_TPlot.pdf
TRINITY_DN33032_c0_g1:66	si_a70	TRINITY_DN33032_c0_g1	55	76	66	-23.90	-16.10	0.673640167364017	8	1-6,76-71;9-20,67-56	7-8,70-68[AILt];21-21,55-55[UP3]	.((((((((((((...((((((&))))))-..)))))))))))).	UAUGAAGAACAAUACAGAAAGG&UCUUUC-AAAUUGUUUUUCAUU	4	0.999999999153632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN33032_c0_g1_66_TPlot.pdf
TRINITY_DN33047_c0_g1:309	si_s607	TRINITY_DN33047_c0_g1	298	318	309	-27.60	-20.00	0.72463768115942	7.5	1-3,318-316;6-11,313-308;13-21,306-298	4-5,315-314[SIL];12-12,307-307[SIL]	(((((((((.((((((..(((&)))..)))))).)))))))))	UUGGAUUUGUGAAAGACACGC&GCGAAUCUUUUUUAAAUCCAA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN33047_c0_g1_309_TPlot.pdf
TRINITY_DN33047_c0_g1:885	si_s502	TRINITY_DN33047_c0_g1	874	894	885	-22.40	-17.80	0.794642857142857	5.5	1-16,894-879	17-21,878-874[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGAAGAGAAUUGUUUUGUUUG&UAAACAAAACAAUUCUAUAUU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN33047_c0_g1_885_TPlot.pdf
TRINITY_DN33047_c0_g1:886	si_s501	TRINITY_DN33047_c0_g1	875	895	886	-22.60	-17.80	0.787610619469027	6	2-17,894-879	1-1,895-895[UP5];18-21,878-875[UP3]	....((((((((((((((((.&.))))))))))))))))....	GAAGAGAAUUGUUUUGUUUGA&AUAAACAAAACAAUUCUAUAU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s501_TRINITY_DN33047_c0_g1_886_TPlot.pdf
TRINITY_DN33047_c0_g1:887	si_s500	TRINITY_DN33047_c0_g1	876	896	887	-22.80	-17.80	0.780701754385965	7	3-18,894-879	1-2,896-895[UP5];19-21,878-876[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAGAGAAUUGUUUUGUUUGAU&UAUAAACAAAACAAUUCUAUA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN33047_c0_g1_887_TPlot.pdf
TRINITY_DN33047_c0_g1:888	si_s499	TRINITY_DN33047_c0_g1	877	897	888	-22.60	-17.80	0.787610619469027	8	4-19,894-879	1-3,897-895[UP5];20-21,878-877[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGAGAAUUGUUUUGUUUGAUA&AUAUAAACAAAACAAUUCUAU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN33047_c0_g1_888_TPlot.pdf
TRINITY_DN33047_c0_g1:889	si_s498	TRINITY_DN33047_c0_g1	878	898	889	-22.40	-17.80	0.794642857142857	9	5-20,894-879	1-4,898-895[UP5];21-21,878-878[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAGAAUUGUUUUGUUUGAUAC&AAUAUAAACAAAACAAUUCUA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN33047_c0_g1_889_TPlot.pdf
TRINITY_DN33047_c0_g1:890	si_s497	TRINITY_DN33047_c0_g1	879	899	890	-22.00	-17.40	0.790909090909091	10	6-21,894-879	1-5,899-895[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAUUGUUUUGUUUGAUACU&AAAUAUAAACAAAACAAUUCU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN33047_c0_g1_890_TPlot.pdf
TRINITY_DN33047_c0_g1:891	si_s496	TRINITY_DN33047_c0_g1	880	900	891	-21.70	-16.10	0.741935483870968	12	7-21,894-880	1-6,900-895[UP5]	(((((((((((((((......&......)))))))))))))))	GAAUUGUUUUGUUUGAUACUU&UAAAUAUAAACAAAACAAUUC	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN33047_c0_g1_891_TPlot.pdf
TRINITY_DN33047_c0_g1:892	si_s495	TRINITY_DN33047_c0_g1	881	901	892	-19.80	-12.90	0.651515151515151	14	8-21,894-881	1-7,901-895[UP5]	((((((((((((((.......&.......))))))))))))))	AAUUGUUUUGUUUGAUACUUU&UUAAAUAUAAACAAAACAAUU	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN33047_c0_g1_892_TPlot.pdf
TRINITY_DN3304_c10_g1:130	si_a397	TRINITY_DN3304_c10_g1	118	139	130	-24.00	-16.60	0.691666666666667	7	1-6,139-134;8-14,132-126;15-20,124-119	7-7,133-133[SIL];x-x,125-125[BULt];21-21,118-118[UP3]	.((((((.(((((((.((((((&)))))).)))))))-)))))).	UAACAGGUACAGUUCGGUAUUC&GAAUAUAGAAUUGU-UUUGUUU	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN3304_c10_g1_130_TPlot.pdf
TRINITY_DN3304_c10_g1:175	si_a407	TRINITY_DN3304_c10_g1	164	184	175	-19.80	-13.40	0.676767676767677	7.5	1-10,184-175;12-17,173-168	11-11,174-174[SIL];18-21,167-164[UP3]	....((((((.((((((((((&)))))))))).))))))....	GCAGAAAUGUUAACAGAACAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3304_c10_g1_175_TPlot.pdf
TRINITY_DN3304_c10_g1:176	si_a406	TRINITY_DN3304_c10_g1	165	185	176	-19.80	-13.40	0.676767676767677	7.5	2-11,184-175;13-18,173-168	1-1,185-185[UP5];12-12,174-174[SIL];19-21,167-165[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	CAGAAAUGUUAACAGAACAAC&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3304_c10_g1_176_TPlot.pdf
TRINITY_DN3304_c1_g1:109	si_a411	TRINITY_DN3304_c1_g1	98	118	109	-17.90	-13.40	0.748603351955307	7	1-4,118-115;7-20,112-99	5-6,114-113[SIL];21-21,98-98[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	CUUUAUUUAAGUGUACUCAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3304_c1_g1_109_TPlot.pdf
TRINITY_DN3304_c1_g1:110	si_a410	TRINITY_DN3304_c1_g1	99	119	110	-17.80	-14.20	0.797752808988764	6	1-5,119-115;8-21,112-99	6-7,114-113[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UUUAUUUAAGUGUACUCAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3304_c1_g1_110_TPlot.pdf
TRINITY_DN3304_c1_g1:383	si_s399	TRINITY_DN3304_c1_g1	371	392	383	-33.50	-22.30	0.665671641791045	7	3-4,390-389;6-17,387-376;18-20,374-372	1-2,392-391[UP5];5-5,388-388[SIL];x-x,375-375[BULt];21-21,371-371[UP3]	.(((.((((((((((((.((..&..)).))))))))))))-))).	AGUUAUUUCGUCUUCCUCGGUA&UUCCAAGGAAGACGAAA-AACG	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s399_TRINITY_DN3304_c1_g1_383_TPlot.pdf
TRINITY_DN3304_c1_g1:4299	si_a471	TRINITY_DN3304_c1_g1	4288	4308	4299	-21.10	-14.40	0.682464454976303	5.5	2-12,4307-4297;14-19,4295-4290	1-1,4308-4308[UP5];13-13,4296-4296[SIL];20-21,4289-4288[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	AAGUAACACUAAUUAUAUAUG&AAUAUGUAAUUAUUGUUAUAU	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN3304_c1_g1_4299_TPlot.pdf
TRINITY_DN3304_c1_g1:4537	si_s39	TRINITY_DN3304_c1_g1	4526	4547	4537	-22.30	-15.10	0.677130044843049	8	2-5,4546-4543;7-18,4540-4529	1-1,4547-4547[UP5];6-6,4542-4541[AILt];19-21,4528-4526[UP3]	...((((((((((((..((((.&.))))-.))))))))))))...	GGCUCCAAUUAUUAAUUGAUUA&AAAUC-UUUAAUAAUUGGAUUU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN3304_c1_g1_4537_TPlot.pdf
TRINITY_DN3304_c1_g1:4538	si_s38	TRINITY_DN3304_c1_g1	4527	4548	4538	-22.70	-15.10	0.665198237885463	9	3-6,4546-4543;8-19,4540-4529	1-2,4548-4547[UP5];7-7,4542-4541[AILt];20-21,4528-4527[UP3]	..((((((((((((..((((..&..))))-.))))))))))))..	GCUCCAAUUAUUAAUUGAUUAU&UAAAUC-UUUAAUAAUUGGAUU	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN3304_c1_g1_4538_TPlot.pdf
TRINITY_DN3304_c1_g2:1504	si_s485	TRINITY_DN3304_c1_g2	1493	1513	1504	-18.10	-12.00	0.662983425414365	6.5	3-9,1511-1505;11-21,1503-1493	1-2,1513-1512[UP5];10-10,1504-1504[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	UUUAUGUUUAAUUAAAUGUUA&CUAUAUUUAUUUAAAUAUAAA	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN3304_c1_g2_1504_TPlot.pdf
TRINITY_DN3305_c0_g1:11031	si_a716	TRINITY_DN3305_c0_g1	11020	11040	11031	-33.40	-23.90	0.715568862275449	5.5	1-4,11040-11037;6-10,11035-11031;12-13,11029-11028;15-21,11026-11020	5-5,11036-11036[SIL];11-11,11030-11030[SIL];14-14,11027-11027[SIL]	(((((((.((.(((((.((((&)))).))))).)).)))))))	GCCCGAGCGAGGAUUACUUUG&CAAAAUAAUCGUUACUCGGGC	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN3305_c0_g1_11031_TPlot.pdf
TRINITY_DN3305_c0_g1:11058	si_s106	TRINITY_DN3305_c0_g1	11046	11067	11058	-28.60	-18.90	0.660839160839161	9	4-10,11064-11058;11-21,11056-11046	1-3,11067-11065[UP5];x-x,11057-11057[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UUUUCUAUUUUGCUAGUCCCCG&UUCGGAUUGG-AAAAUAGAAAA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s106_TRINITY_DN3305_c0_g1_11058_TPlot.pdf
TRINITY_DN3305_c0_g1:8140	si_s531	TRINITY_DN3305_c0_g1	8129	8149	8140	-30.00	-22.00	0.733333333333333	11	4-7,8146-8143;10-21,8140-8129	1-3,8149-8147[UP5];8-9,8142-8141[SIL]	((((((((((((..((((...&...))))..))))))))))))	GAUCGGAUCGAGUUUGAUGAC&GAAAUCAUUUUUGAUCCGAUC	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN3305_c0_g1_8140_TPlot.pdf
TRINITY_DN33066_c0_g1:73	si_a640	TRINITY_DN33066_c0_g1	62	83	73	-24.10	-15.70	0.651452282157676	11	1-5,83-79;8-18,75-65;20-21,63-62	6-7,78-76[AILt];19-19,64-64[SIL]	((.(((((((((((...(((((&)))))-..))))))))))).))	GACAUGUUGCUCAGUUCGAGUC&GAUUU-UUUUGAGUAAUAUAUC	0	0.284804259723251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN33066_c0_g1_73_TPlot.pdf
TRINITY_DN33071_c0_g1:108	si_s72	TRINITY_DN33071_c0_g1	92	117	108	-24.10	-19.70	0.817427385892116	13	1-12,117-106;13-21,100-92	x-x,105-101[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	GGGGAAAGAAGAUUGAAGAAAUAGAA&UUCUAUUUUUUU-----UCUUUCCUU	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN33071_c0_g1_108_TPlot.pdf
TRINITY_DN33071_c0_g1:112	si_s68	TRINITY_DN33071_c0_g1	99	121	112	-23.10	-15.70	0.67965367965368	8.5	4-16,118-106;17-21,103-99	1-3,121-119[UP5];x-x,105-104[BULt]	(((((..(((((((((((((...&...)))))))))))))--)))))	GAAGAUUGAAGAAAUAGAAGAAA&CAACUUCUAUUUUUUU--UCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN33071_c0_g1_112_TPlot.pdf
TRINITY_DN33077_c2_g1:28	si_a783	TRINITY_DN33077_c2_g1	13	38	28	-24.70	-16.40	0.663967611336032	12	1-6,38-33;7-11,31-27;12-21,22-13	x-x,32-32[BULt];x-x,26-23[BULt]	((((((((((....(((((.((((((&))))))-)))))----))))))))))	AAAUGGAGAAUAGCAUGGACAGAGUU&AACUCU-UCUAU----UUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN33077_c2_g1_28_TPlot.pdf
TRINITY_DN33077_c2_g1:29	si_a782	TRINITY_DN33077_c2_g1	14	39	29	-26.40	-18.70	0.708333333333333	12	1-7,39-33;8-12,31-27;13-21,22-14	x-x,32-32[BULt];x-x,26-23[BULt]	(((((((((....(((((.(((((((&)))))))-)))))----)))))))))	AAUGGAGAAUAGCAUGGACAGAGUUG&CAACUCU-UCUAU----UUUUCUAUU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN33077_c2_g1_29_TPlot.pdf
TRINITY_DN33077_c2_g1:30	si_a781	TRINITY_DN33077_c2_g1	15	40	30	-27.40	-18.00	0.656934306569343	8.5	1-8,40-33;9-13,31-27;14-21,22-15	x-x,32-32[BULt];x-x,26-23[BULt]	((((((((....(((((.((((((((&))))))))-)))))----))))))))	AUGGAGAAUAGCAUGGACAGAGUUGG&UCAACUCU-UCUAU----UUUUCUAU	3	0.999999482553996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN33077_c2_g1_30_TPlot.pdf
TRINITY_DN3307_c0_g1:1292	si_a394	TRINITY_DN3307_c0_g1	1278	1301	1292	-24.30	-17.10	0.703703703703704	7	3-14,1299-1288;15-21,1284-1278	1-2,1301-1300[UP5];x-x,1287-1285[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	UAAGACACGCAUUCUAUAUUCUAU&UAAGAAUAUAGAAU---UGUUUUG	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN3307_c0_g1_1292_TPlot.pdf
TRINITY_DN3307_c0_g1:603	si_a323	TRINITY_DN3307_c0_g1	592	612	603	-26.80	-18.50	0.690298507462687	9	2-4,611-609;6-19,607-594	1-1,612-612[UP5];5-5,608-608[SIL];20-21,593-592[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	UCGGAAUGGAGAGAUUUUGGU&UCCAUGAUUUUUUUAUUCCUU	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3307_c0_g1_603_TPlot.pdf
TRINITY_DN3308_c0_g1:1816	si_a191	TRINITY_DN3308_c0_g1	1805	1825	1816	-32.00	-22.60	0.70625	8.5	2-10,1824-1816;12-19,1814-1807	1-1,1825-1825[UP5];11-11,1815-1815[SIL];20-21,1806-1805[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	ACUUAGUGGAAGGGGGAGGAA&AUCUUUCCCUGUUCACUAAUA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN3308_c0_g1_1816_TPlot.pdf
TRINITY_DN3308_c0_g1:2922	si_s598	TRINITY_DN3308_c0_g1	2911	2932	2922	-28.20	-18.40	0.652482269503546	12.5	4-7,2929-2926;10-21,2922-2911	1-3,2932-2930[UP5];8-9,2925-2923[AILt]	((((((((((((...((((...&...))))-..))))))))))))	AAAGGGGUUCGCCAGGGAUGUA&UAAAUCC-AAGCGAAUCUUUUU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN3308_c0_g1_2922_TPlot.pdf
TRINITY_DN3308_c0_g1:2927	si_s594	TRINITY_DN3308_c0_g1	2915	2936	2927	-33.50	-22.30	0.665671641791045	9	2-6,2935-2931;8-11,2929-2926;14-21,2922-2915	1-1,2936-2936[UP5];7-7,2930-2930[SIL];12-13,2925-2923[AILt]	((((((((...((((.(((((.&.))))).))))-..))))))))	GGGUUCGCCAGGGAUGUAUCCU&UGGAUAAAUCC-AAGCGAAUCU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s594_TRINITY_DN3308_c0_g1_2927_TPlot.pdf
TRINITY_DN3309_c0_g1:2423	si_s82	TRINITY_DN3309_c0_g1	2413	2431	2423	-28.90	-18.90	0.653979238754325	6	1-4,2431-2428;7-17,2426-2416;19-21,2415-2413	5-6,2427-2427[AILq];18-18,x-x[BULq]	(((-(((((((((((.-((((&))))..))))))))))).)))	AAG-AGAAGAAGGGAU-GAAA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3309_c0_g1_2423_TPlot.pdf
TRINITY_DN3309_c0_g1:336	si_a784	TRINITY_DN3309_c0_g1	325	346	336	-24.70	-16.40	0.663967611336032	8.5	2-7,345-340;8-16,338-330	1-1,346-346[UP5];x-x,339-339[BULt];17-21,329-325[UP3]	.....(((((((((.((((((.&.))))))-))))))))).....	GAUCGAGAGAAAUACGAAGAGA&ACUCUUC-UAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3309_c0_g1_336_TPlot.pdf
TRINITY_DN3309_c0_g1:337	si_a783	TRINITY_DN3309_c0_g1	326	347	337	-24.70	-16.40	0.663967611336032	9.5	3-8,345-340;9-17,338-330	1-2,347-346[UP5];x-x,339-339[BULt];18-21,329-326[UP3]	....(((((((((.((((((..&..))))))-)))))))))....	AUCGAGAGAAAUACGAAGAGAA&AACUCUUC-UAUUUUUCUAUUU	2	0.999999999988527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3309_c0_g1_337_TPlot.pdf
TRINITY_DN3309_c0_g1:390	si_s73	TRINITY_DN3309_c0_g1	372	399	390	-24.00	-16.70	0.695833333333333	11.5	2-15,398-385;16-21,377-372	1-1,399-399[UP5];x-x,384-378[BULt]	((((((.......((((((((((((((.&.))))))))))))))-------))))))	AAAGGAAGAAAUAGAGGAAGAAGAUAGC&UCUAUUUUUUUUCUU-------UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3309_c0_g1_390_TPlot.pdf
TRINITY_DN3309_c0_g1:395	si_s68	TRINITY_DN3309_c0_g1	384	406	395	-23.10	-15.90	0.688311688311688	7.5	2-6,405-401;7-21,398-384	1-1,406-406[UP5];x-x,400-399[BULt]	(((((((((((((((..(((((.&.)))))--)))))))))))))))	AGAGGAAGAAGAUAGCAAAGUUA&CAACUU--CUAUUUUUUUUCUUU	4	0.99999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3309_c0_g1_395_TPlot.pdf
TRINITY_DN3309_c0_g1:699	si_s71	TRINITY_DN3309_c0_g1	688	708	699	-25.70	-20.20	0.785992217898833	5.5	2-5,707-704;7-21,702-688	1-1,708-708[UP5];6-6,703-703[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AGGGAAGAAGAGAAACAGAAA&CUUCUAUUUUUUUUCUUUCCU	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3309_c0_g1_699_TPlot.pdf
TRINITY_DN330_c0_g1:271	si_s525	TRINITY_DN330_c0_g1	260	280	271	-24.00	-18.10	0.754166666666667	7	4-14,277-267;16-21,265-260	1-3,280-278[UP5];15-15,266-266[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AUCAAAUAUGGUUUCGAAAGU&UAAUUCGAAAUCAUUUUUGAU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN330_c0_g1_271_TPlot.pdf
TRINITY_DN330_c0_g1:272	si_s524	TRINITY_DN330_c0_g1	261	281	272	-23.90	-17.10	0.715481171548117	9	5-15,277-267;17-21,265-261	1-4,281-278[UP5];16-16,266-266[SIL]	(((((.(((((((((((....&....))))))))))).)))))	UCAAAUAUGGUUUCGAAAGUA&UUAAUUCGAAAUCAUUUUUGA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN330_c0_g1_272_TPlot.pdf
TRINITY_DN3310_c0_g1:2212	si_s296	TRINITY_DN3310_c0_g1	2201	2221	2212	-31.60	-21.30	0.674050632911392	10.5	1-9,2221-2213;12-17,2210-2205	10-11,2212-2211[SIL];18-21,2204-2201[UP3]	....((((((..(((((((((&)))))))))..))))))....	GCACUCGCGACGUCAGUCGAC&GUCGAUUGGAAUUGCGAAAAU	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN3310_c0_g1_2212_TPlot.pdf
TRINITY_DN3310_c0_g1:2657	si_a279	TRINITY_DN3310_c0_g1	2646	2665	2657	-32.50	-21.70	0.667692307692308	7	1-3,2665-2663;6-19,2661-2648	4-5,2662-2662[AILq];20-21,2647-2646[UP3]	..((((((((((((((.-(((&)))..))))))))))))))..	UCUCUAAGCGAUCUUUA-GUG&UACGAAAAGAUCGCUUGGAUU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN3310_c0_g1_2657_TPlot.pdf
TRINITY_DN3310_c0_g1:2989	si_a504	TRINITY_DN3310_c0_g1	2978	2999	2989	-32.90	-22.20	0.674772036474164	8.5	2-6,2998-2994;7-15,2992-2984;17-21,2982-2978	1-1,2999-2999[UP5];x-x,2993-2993[BULt];16-16,2983-2983[SIL]	(((((.(((((((((.(((((.&.)))))-))))))))).)))))	GCGUUGCGAGGAAGAUUGGAGC&UUUUCG-UCUUCCUUGGAAUGU	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN3310_c0_g1_2989_TPlot.pdf
TRINITY_DN3310_c0_g1:3024	si_a634	TRINITY_DN3310_c0_g1	3013	3033	3024	-26.40	-18.20	0.689393939393939	9	2-13,3032-3021;16-19,3018-3015	1-1,3033-3033[UP5];14-15,3020-3019[SIL];20-21,3014-3013[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	CAGCUCCUGGAGGUCGACAUC&UAUGUCGAUUUUUUUGAGUAA	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN3310_c0_g1_3024_TPlot.pdf
TRINITY_DN3310_c0_g1:3029	si_a629	TRINITY_DN3310_c0_g1	3018	3040	3029	-26.30	-18.00	0.684410646387833	10	1-6,3040-3035;7-18,3032-3021	x-x,3034-3033[BULt];19-21,3020-3018[UP3]	...((((((((((((..((((((&))))))--))))))))))))...	CCUGGAGGUCGACAUCGAGUACG&CGUAUU--AUGUCGAUUUUUUUG	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN3310_c0_g1_3029_TPlot.pdf
TRINITY_DN3312_c0_g1:627	si_a486	TRINITY_DN3312_c0_g1	615	636	627	-24.90	-16.70	0.670682730923695	8	1-12,636-625;14-18,622-618	13-13,624-623[AILt];19-21,617-615[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	GUUGCGAUUUUAUUCUGUAUAA&UUAUAUAGAAUA-UGUCGUUUU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN3312_c0_g1_627_TPlot.pdf
TRINITY_DN3312_c0_g2:1391	si_a801	TRINITY_DN3312_c0_g2	1379	1399	1391	-34.60	-23.10	0.667630057803468	6	2-7,1398-1393;9-11,1392-1390;13-17,1388-1384;18-21,1382-1379	1-1,1399-1399[UP5];8-8,x-x[BULq];12-12,1389-1389[SIL];x-x,1383-1383[BULt]	((((.(((((.(((-((((((.&.)))))).))).)))))-))))	UCUUACGCUUGGGA-UGGAAAU&UUUUCCAAUCCGAAGCG-AAGA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN3312_c0_g2_1391_TPlot.pdf
TRINITY_DN3313_c0_g1:2200	si_a318	TRINITY_DN3313_c0_g1	2189	2209	2200	-22.50	-15.10	0.671111111111111	12.5	6-18,2204-2192	1-5,2209-2205[UP5];19-21,2191-2189[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUCAAAAAGUCAUGGACACCA&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3313_c0_g1_2200_TPlot.pdf
TRINITY_DN3314_c0_g1:588	si_s797	TRINITY_DN3314_c0_g1	577	600	588	-30.00	-19.50	0.65	11.5	1-4,600-597;5-6,595-594;7-19,591-579	x-x,596-596[BULt];x-x,593-592[BULt];20-21,578-577[UP3]	..(((((((((((((..((.((((&))))-))--)))))))))))))..	CCACGAAGGUGAAGUAAACAGGGC&GCUC-GU--AUUUUAUCUUCGUUA	4	0.999999999739047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3314_c0_g1_588_TPlot.pdf
TRINITY_DN3314_c0_g1:769	si_s47	TRINITY_DN3314_c0_g1	758	778	769	-26.30	-17.90	0.680608365019011	10.5	6-17,773-762;19-21,760-758	1-5,778-774[UP5];18-18,761-761[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	CUAUCUUGGAAUCCAAACUUA&AAUAAUUGGAUUUCAAGUUAG	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN3314_c0_g1_769_TPlot.pdf
TRINITY_DN3315_c0_g1:223	si_a149	TRINITY_DN3315_c0_g1	213	232	223	-29.40	-19.50	0.663265306122449	12	1-11,232-222;15-19,219-215	12-14,221-220[AILq];20-21,214-213[UP3]	..(((((..-(((((((((((&)))))))))))...)))))..	GCUGGCUGU-GAGCGACGGCG&CGUUGUUGUUUUAAGGUCAAU	2	0.9998987283439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN3315_c0_g1_223_TPlot.pdf
TRINITY_DN3315_c0_g1:224	si_a148	TRINITY_DN3315_c0_g1	214	233	224	-30.30	-19.70	0.65016501650165	10.5	1-12,233-222;16-20,219-215	13-15,221-220[AILq];21-21,214-214[UP3]	.(((((..-((((((((((((&))))))))))))...))))).	CUGGCUGU-GAGCGACGGCGG&UCGUUGUUGUUUUAAGGUCAA	2	0.999991905066619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN3315_c0_g1_224_TPlot.pdf
TRINITY_DN33179_c0_g1:1815	si_s896	TRINITY_DN33179_c0_g1	1797	1824	1815	-31.60	-21.70	0.686708860759494	8.5	1-10,1824-1815;11-14,1813-1810;15-21,1803-1797	x-x,1814-1814[BULt];x-x,1809-1804[BULt]	(((((((......((((.((((((((((&))))))))))-))))------)))))))	UGAAAUUCUUCCAGAAGCAGAAAGCCUG&UAGGCUUUCU-CUUC------AAUUUCA	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN33179_c0_g1_1815_TPlot.pdf
TRINITY_DN3317_c0_g2:1008	si_a790	TRINITY_DN3317_c0_g2	997	1018	1008	-25.80	-18.70	0.724806201550388	7.5	1-7,1018-1012;8-10,1010-1008;12-21,1006-997	x-x,1011-1011[BULt];11-11,1007-1007[SIL]	((((((((((.(((.(((((((&)))))))-))).))))))))))	GAUUGGAAGAGAGGUAAGGUAG&CUAUUUU-UCUAUUUUCCAAUC	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN3317_c0_g2_1008_TPlot.pdf
TRINITY_DN33180_c0_g1:141	si_a439	TRINITY_DN33180_c0_g1	130	150	141	-32.40	-21.60	0.666666666666667	8	1-3,150-148;5-17,146-134	4-4,147-147[SIL];18-21,133-130[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UUCAUAUCUUAUAUCCAUUGG&CCGUUGGAUAUGAGAUAAUUG	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a439_TRINITY_DN33180_c0_g1_141_TPlot.pdf
TRINITY_DN33193_c1_g1:104	si_s601	TRINITY_DN33193_c1_g1	93	113	104	-28.30	-18.70	0.660777385159011	6	1-6,113-108;9-21,105-93	7-8,107-106[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UUAAAAAAGAUUUUGUUGGGU&AUCCAAGCGAAUCUUUUUUAA	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN33193_c1_g1_104_TPlot.pdf
TRINITY_DN3322_c0_g3:1741	si_s825	TRINITY_DN3322_c0_g3	1730	1750	1741	-21.30	-13.90	0.652582159624413	10	4-19,1747-1732	1-3,1750-1748[UP5];20-21,1731-1730[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGGUUGUUUUUUAUUGUGGA&UUAAUAAUGAAAAACAAUUUG	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN3322_c0_g3_1741_TPlot.pdf
TRINITY_DN3322_c0_g3:1744	si_s822	TRINITY_DN3322_c0_g3	1733	1751	1744	-22.30	-14.70	0.659192825112108	7.5	1-4,1751-1748;7-21,1747-1733	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GUUGUUUUUUAUUGU--GGAA&UUCUUAAUAAUGAAAAACAAU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN3322_c0_g3_1744_TPlot.pdf
TRINITY_DN3322_c0_g6:220	si_s441	TRINITY_DN3322_c0_g6	209	229	220	-23.20	-15.80	0.681034482758621	7	1-17,229-213	18-21,212-209[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAUUUUGUAUAUAGUAUGUGG&UUACAUAUUAUAUAUAACAAC	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN3322_c0_g6_220_TPlot.pdf
TRINITY_DN3323_c0_g1:652	si_s829	TRINITY_DN3323_c0_g1	641	661	652	-23.30	-15.20	0.652360515021459	5.5	1-6,661-656;8-19,654-643	7-7,655-655[SIL];20-21,642-641[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	ACUUCGAAUUGUUUGUUAUUA&UAAUGAAAAACAAUUUGAAAG	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s829_TRINITY_DN3323_c0_g1_652_TPlot.pdf
TRINITY_DN3323_c0_g1:654	si_s827	TRINITY_DN3323_c0_g1	643	663	654	-21.90	-17.10	0.780821917808219	3.5	1-8,663-656;10-21,654-643	9-9,655-655[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UUCGAAUUGUUUGUUAUUAUU&AAUAAUGAAAAACAAUUUGAA	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN3323_c0_g1_654_TPlot.pdf
TRINITY_DN3323_c0_g1:656	si_s825	TRINITY_DN3323_c0_g1	645	665	656	-21.30	-16.20	0.76056338028169	4.5	1-10,665-656;12-21,654-645	11-11,655-655[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	CGAAUUGUUUGUUAUUAUUGA&UUAAUAAUGAAAAACAAUUUG	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN3323_c0_g1_656_TPlot.pdf
TRINITY_DN3325_c0_g1:1350	si_a66	TRINITY_DN3325_c0_g1	1341	1359	1350	-26.70	-18.70	0.700374531835206	9	1-10,1359-1350;14-21,1348-1341	11-13,1349-1349[AILq]	((((((((.--((((((((((&))))))))))...))))))))	GGAAGCAGC--GAAGGGAGCG&CGCUUCUUUCAAAUUGUUUUU	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3325_c0_g1_1350_TPlot.pdf
TRINITY_DN33263_c0_g1:4075	si_s493	TRINITY_DN33263_c0_g1	4064	4084	4075	-19.80	-13.80	0.696969696969697	14	8-21,4077-4064	1-7,4084-4078[UP5]	((((((((((((((.......&.......))))))))))))))	UUGUUUUGUUUGUACAAAGUG&AUUUAAAUAUAAACAAAACAA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN33263_c0_g1_4075_TPlot.pdf
TRINITY_DN33263_c1_g1:613	si_s12	TRINITY_DN33263_c1_g1	600	622	613	-22.80	-16.30	0.714912280701754	7.5	1-14,622-609;15-18,606-603	x-x,608-607[BULt];19-21,602-600[UP3]	...((((..((((((((((((((&))))))))))))))--))))...	AUCCAAUAAGUAGUGGUAAUAAG&CUUAUUAUUACUAU--AUUGAUU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN33263_c1_g1_613_TPlot.pdf
TRINITY_DN33263_c1_g1:615	si_s10	TRINITY_DN33263_c1_g1	602	624	615	-23.80	-16.30	0.684873949579832	8.5	3-16,622-609;17-20,606-603	1-2,624-623[UP5];x-x,608-607[BULt];21-21,602-602[UP3]	.((((..((((((((((((((..&..))))))))))))))--)))).	CCAAUAAGUAGUGGUAAUAAGAU&UACUUAUUAUUACUAU--AUUGA	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN33263_c1_g1_615_TPlot.pdf
TRINITY_DN3327_c0_g1:2225	si_a62	TRINITY_DN3327_c0_g1	2215	2234	2225	-32.20	-22.10	0.686335403726708	6	1-5,2234-2230;7-14,2228-2221;17-20,2219-2216	6-6,2229-2229[SIL];15-16,2220-2220[AILq];21-21,2215-2215[UP3]	.((((.-((((((((.(((((&))))).))))))))..)))).	CCAAUA-GAGAGAAGGGAGUC&GACUCGCUUCUUUCAAAUUGU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN3327_c0_g1_2225_TPlot.pdf
TRINITY_DN3327_c0_g1:3310	si_a776	TRINITY_DN3327_c0_g1	3299	3319	3310	-27.10	-17.70	0.653136531365314	11	4-16,3316-3304	1-3,3319-3317[UP5];17-21,3303-3299[UP3]	.....(((((((((((((...&...))))))))))))).....	UUUUAAGAAGGGUUGAAUAAU&UUGAUUCAACUCUUCUAUUUU	4	0.999993281469884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN3327_c0_g1_3310_TPlot.pdf
TRINITY_DN3329_c0_g1:1672	si_s93	TRINITY_DN3329_c0_g1	1657	1681	1672	-34.80	-23.40	0.672413793103448	10.5	1-14,1681-1668;15-17,1663-1661	x-x,1667-1664[BULt];18-21,1660-1657[UP3]	....(((....((((((((((((((&))))))))))))))----)))....	UAAUCGAAGUAGGCGAAGGAGAGGA&UCUUCUUCUUCGCU----UCGGAUU	4	0.999999998822403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3329_c0_g1_1672_TPlot.pdf
TRINITY_DN3329_c0_g1:1673	si_s92	TRINITY_DN3329_c0_g1	1658	1682	1673	-34.90	-23.50	0.673352435530086	10.5	2-15,1681-1668;16-18,1663-1661	1-1,1682-1682[UP5];x-x,1667-1664[BULt];19-21,1660-1658[UP3]	...(((....((((((((((((((.&.))))))))))))))----)))...	AAUCGAAGUAGGCGAAGGAGAGGAC&UUCUUCUUCUUCGCU----UCGGAU	2	0.999999159670103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3329_c0_g1_1673_TPlot.pdf
TRINITY_DN3329_c0_g1:1674	si_s91	TRINITY_DN3329_c0_g1	1659	1683	1674	-34.70	-23.50	0.677233429394813	11.5	3-16,1681-1668;17-19,1663-1661	1-2,1683-1682[UP5];x-x,1667-1664[BULt];20-21,1660-1659[UP3]	..(((....((((((((((((((..&..))))))))))))))----)))..	AUCGAAGUAGGCGAAGGAGAGGACC&UUUCUUCUUCUUCGCU----UCGGA	4	0.999999999977159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3329_c0_g1_1674_TPlot.pdf
TRINITY_DN3329_c0_g1:3354	si_s1	TRINITY_DN3329_c0_g1	3343	3362	3354	-18.70	-13.80	0.737967914438503	5.5	1-7,3362-3356;9-20,3355-3344	8-8,x-x[BULq];21-21,3343-3343[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	AGAUAGUAGGUAA-AUGAAAA&UUUUUAUAUUACUUAUUAUUA	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN3329_c0_g1_3354_TPlot.pdf
TRINITY_DN3329_c0_g2:111	si_s102	TRINITY_DN3329_c0_g2	100	120	111	-34.10	-24.40	0.715542521994135	5.5	1-13,120-108;15-21,106-100	14-14,107-107[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	CUAUUUUGCGGUUCGAAGUGG&UCGCUUCGGAUUGGAAAAUAG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN3329_c0_g2_111_TPlot.pdf
TRINITY_DN332_c0_g1:2793	si_a377	TRINITY_DN332_c0_g1	2782	2801	2793	-24.50	-17.00	0.693877551020408	7	1-6,2801-2796;8-19,2795-2784	7-7,x-x[BULq];20-21,2783-2782[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	GAUGGUUCGGGAUC-UUUUUG&CAAAAAUGAUUUCGAAUUAAG	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a377_TRINITY_DN332_c0_g1_2793_TPlot.pdf
TRINITY_DN332_c0_g1:3192	si_s210	TRINITY_DN332_c0_g1	3181	3201	3192	-35.90	-24.00	0.668523676880223	6	2-13,3200-3189;16-21,3186-3181	1-1,3201-3201[UP5];14-15,3188-3187[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UGGUUUGCGAUACGACUGGUC&UACCAGUUGUGUUCGAAACCG	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN332_c0_g1_3192_TPlot.pdf
TRINITY_DN3330_c0_g1:2875	si_s100	TRINITY_DN3330_c0_g1	2864	2884	2875	-33.70	-23.10	0.685459940652819	8.5	1-13,2884-2872	14-21,2871-2864[UP3]	........(((((((((((((&)))))))))))))........	ACGAAGAUGUCCGAAGCGAAG&CUUCGCUUCGGAUUGGAAAAU	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN3330_c0_g1_2875_TPlot.pdf
TRINITY_DN3330_c0_g1:3021	si_s73	TRINITY_DN3330_c0_g1	3009	3030	3021	-24.00	-20.30	0.845833333333333	5.5	1-15,3030-3016;16-21,3014-3009	x-x,3015-3015[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	GGAGGAUAAGGAGAAAGAUAGG&UCUAUUUUUUUUCUU-UCCUUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3330_c0_g1_3021_TPlot.pdf
TRINITY_DN3330_c0_g1:3022	si_s72	TRINITY_DN3330_c0_g1	3010	3031	3022	-24.10	-20.20	0.838174273858921	6	2-16,3030-3016;17-21,3014-3010	1-1,3031-3031[UP5];x-x,3015-3015[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GAGGAUAAGGAGAAAGAUAGGG&UUCUAUUUUUUUUCUU-UCCUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3330_c0_g1_3022_TPlot.pdf
TRINITY_DN3330_c0_g1:4488	si_a767	TRINITY_DN3330_c0_g1	4477	4498	4488	-30.10	-22.00	0.730897009966777	6.5	1-8,4498-4491;9-9,4489-4489;11-21,4487-4477	x-x,4490-4490[BULt];10-10,4488-4488[SIL]	(((((((((((.(.((((((((&))))))))-).)))))))))))	GAGUUGAAUCGUUACGAAAACU&GGUUUUUG-AUUGAUUCAACUC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN3330_c0_g1_4488_TPlot.pdf
TRINITY_DN3331_c0_g1:1101	si_a418	TRINITY_DN3331_c0_g1	1090	1110	1101	-21.20	-14.00	0.660377358490566	9	5-16,1106-1095;18-21,1093-1090	1-4,1110-1107[UP5];17-17,1094-1094[SIL]	((((.((((((((((((....&....)))))))))))).))))	GUCCGAUGUUUAUUUAAGACA&AUAUUUAAAUAAAUAUAGGAU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN3331_c0_g1_1101_TPlot.pdf
TRINITY_DN3331_c0_g1:1255	si_s75	TRINITY_DN3331_c0_g1	1242	1264	1255	-24.00	-15.60	0.65	7.5	4-15,1261-1250;16-21,1247-1242	1-3,1264-1262[UP5];x-x,1249-1248[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	AGGAAGCCGAAAGAAAAAAAUCU&UAUUUUUUUUCUUUC--CUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3331_c0_g1_1255_TPlot.pdf
TRINITY_DN3331_c0_g1:911	si_a329	TRINITY_DN3331_c0_g1	900	920	911	-29.60	-21.10	0.712837837837838	12	6-19,915-902	1-5,920-916[UP5];20-21,901-900[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAGGACAAGGAAUAGAUGACU&AUUUUUUUAUUCCUUGUCCCG	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3331_c0_g1_911_TPlot.pdf
TRINITY_DN33324_c0_g1:99	si_s734	TRINITY_DN33324_c0_g1	88	109	99	-35.50	-23.30	0.656338028169014	8	2-8,108-102;9-13,100-96;15-19,94-90	1-1,109-109[UP5];x-x,101-101[BULt];14-14,95-95[SIL];20-21,89-88[UP3]	..(((((.(((((.(((((((.&.)))))))-))))).)))))..	UUGUCUGGUCACCUCGUCUGGU&UCUAGACG-GGUGAAUAGAUUG	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s734_TRINITY_DN33324_c0_g1_99_TPlot.pdf
TRINITY_DN3333_c0_g1:107	si_s380	TRINITY_DN3333_c0_g1	95	120	107	-40.00	-26.20	0.655	15.5	1-9,120-112;10-10,107-107;11-18,105-98	x-x,111-108[BULt];x-x,106-106[BULt];19-21,97-95[UP3]	...((((((((.(....(((((((((&)))))))))----)-))))))))...	UUCGUGAGGCGAGUCCAAUGCGCGAG&CUCGCGUGU----C-CGCCUUACAUU	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN3333_c0_g1_107_TPlot.pdf
TRINITY_DN3333_c0_g1:14	si_a322	TRINITY_DN3333_c0_g1	3	23	14	-27.00	-18.10	0.67037037037037	12.5	6-21,18-3	1-5,23-19[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGAAUGAGGAAGUCAAUGCA&AUCCAUGAUUUUUUUAUUCCU	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN3333_c0_g1_14_TPlot.pdf
TRINITY_DN3333_c0_g1:845	si_a362	TRINITY_DN3333_c0_g1	833	854	845	-28.00	-18.40	0.657142857142857	10	1-2,854-853;4-12,851-843;13-17,841-837	3-3,852-852[SIL];x-x,842-842[BULt];18-21,836-833[UP3]	....(((((.(((((((((.((&)).)))))))))-)))))....	UUCCUGAUCUCGAUCAAGAAGG&CUAUUUUGAUCG-GAUCAAAAA	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN3333_c0_g1_845_TPlot.pdf
TRINITY_DN3333_c0_g1:848	si_a359	TRINITY_DN3333_c0_g1	836	857	848	-29.20	-20.20	0.691780821917808	9	3-5,855-853;7-15,851-843;16-20,841-837	1-2,857-856[UP5];6-6,852-852[SIL];x-x,842-842[BULt];21-21,836-836[UP3]	.(((((.(((((((((.(((..&..))).)))))))))-))))).	CUGAUCUCGAUCAAGAAGGAGA&AUUCUAUUUUGAUCG-GAUCAA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN3333_c0_g1_848_TPlot.pdf
TRINITY_DN3333_c0_g1:849	si_a358	TRINITY_DN3333_c0_g1	837	858	849	-29.10	-19.90	0.683848797250859	10	4-6,855-853;8-16,851-843;17-21,841-837	1-3,858-856[UP5];7-7,852-852[SIL];x-x,842-842[BULt]	(((((.(((((((((.(((...&...))).)))))))))-)))))	UGAUCUCGAUCAAGAAGGAGAG&AAUUCUAUUUUGAUCG-GAUCA	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN3333_c0_g1_849_TPlot.pdf
TRINITY_DN3334_c0_g1:738	si_s98	TRINITY_DN3334_c0_g1	726	747	738	-34.70	-23.50	0.677233429394813	9	2-12,746-736;13-18,734-729	1-1,747-747[UP5];x-x,735-735[BULt];19-21,728-726[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	GAACUAGUCGCGAAGUGGAGAG&UUCUUCGCUUCG-GAUUGGAAA	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN3334_c0_g1_738_TPlot.pdf
TRINITY_DN3334_c0_g1:741	si_s95	TRINITY_DN3334_c0_g1	729	749	741	-36.30	-24.70	0.680440771349862	6	1-4,749-746;6-15,745-736;16-21,734-729	5-5,x-x[BULq];x-x,735-735[BULt]	((((((.((((((((((-((((&)))).))))))))))-))))))	CUAGUCGCGAAGUGGAG-AGAA&UUCUUCUUCGCUUCG-GAUUGG	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN3334_c0_g1_741_TPlot.pdf
TRINITY_DN33374_c0_g1:284	si_a71	TRINITY_DN33374_c0_g1	273	293	284	-23.30	-15.70	0.67381974248927	9.5	1-7,293-287;10-17,284-277	8-9,286-285[SIL];18-21,276-273[UP3]	....((((((((..(((((((&)))))))..))))))))....	UAAAGAAGAACACAUUGAGAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999998318153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN33374_c0_g1_284_TPlot.pdf
TRINITY_DN33374_c0_g1:285	si_a70	TRINITY_DN33374_c0_g1	274	294	285	-23.90	-17.30	0.723849372384937	8.5	1-8,294-287;11-18,284-277	9-10,286-285[SIL];19-21,276-274[UP3]	...((((((((..((((((((&))))))))..))))))))...	AAAGAAGAACACAUUGAGAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN33374_c0_g1_285_TPlot.pdf
TRINITY_DN33374_c0_g1:286	si_a69	TRINITY_DN33374_c0_g1	275	295	286	-24.00	-18.20	0.758333333333333	7.5	1-9,295-287;12-19,284-277	10-11,286-285[SIL];20-21,276-275[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AAGAAGAACACAUUGAGAGAA&UUCUUUCAAAUUGUUUUUCAU	0	0.0970251652374049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN33374_c0_g1_286_TPlot.pdf
TRINITY_DN33374_c0_g1:287	si_a68	TRINITY_DN33374_c0_g1	276	296	287	-25.40	-20.70	0.81496062992126	6.5	1-10,296-287;13-20,284-277	11-12,286-285[SIL];21-21,276-276[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AGAAGAACACAUUGAGAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN33374_c0_g1_287_TPlot.pdf
TRINITY_DN33374_c0_g1:288	si_a67	TRINITY_DN33374_c0_g1	277	297	288	-27.20	-22.30	0.819852941176471	5	1-11,297-287;14-21,284-277	12-13,286-285[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GAAGAACACAUUGAGAGAAGU&GCUUCUUUCAAAUUGUUUUUC	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN33374_c0_g1_288_TPlot.pdf
TRINITY_DN33374_c0_g1:289	si_a66	TRINITY_DN33374_c0_g1	278	298	289	-26.70	-19.10	0.715355805243446	5.5	2-12,297-287;15-21,284-278	1-1,298-298[UP5];13-14,286-285[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AAGAACACAUUGAGAGAAGUA&CGCUUCUUUCAAAUUGUUUUU	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN33374_c0_g1_289_TPlot.pdf
TRINITY_DN33374_c0_g1:290	si_a65	TRINITY_DN33374_c0_g1	279	299	290	-27.70	-18.20	0.657039711191336	7.5	3-13,297-287;16-21,284-279	1-2,299-298[UP5];14-15,286-285[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	AGAACACAUUGAGAGAAGUAG&UCGCUUCUUUCAAAUUGUUUU	4	0.999999999710675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN33374_c0_g1_290_TPlot.pdf
TRINITY_DN3337_c1_g2:504	si_a785	TRINITY_DN3337_c1_g2	493	514	504	-25.90	-23.70	0.915057915057915	6	1-9,514-506;10-21,504-493	x-x,505-505[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	GAAAGUGGAGAAUGUGGAAGAG&CUCUUCUAU-UUUUCUAUUUUC	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN3337_c1_g2_504_TPlot.pdf
TRINITY_DN3338_c0_g1:1829	si_a675	TRINITY_DN3338_c0_g1	1818	1841	1829	-34.00	-22.20	0.652941176470588	9.5	1-7,1841-1835;8-14,1831-1825;16-21,1823-1818	x-x,1834-1832[BULt];15-15,1824-1824[SIL]	((((((.(((((((...(((((((&)))))))---))))))).))))))	AGAUCGGGUGAAUAUGAGGGAAUU&GAUUCCU---UAUUCACGCGGUUU	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN3338_c0_g1_1829_TPlot.pdf
TRINITY_DN3338_c0_g1:2061	si_a647	TRINITY_DN3338_c0_g1	2050	2071	2061	-29.50	-19.30	0.654237288135593	7	2-6,2070-2066;7-8,2064-2063;10-21,2061-2050	1-1,2071-2071[UP5];x-x,2065-2065[BULt];9-9,2062-2062[SIL]	((((((((((((.((.(((((.&.)))))-)).))))))))))))	GUUUCUCGAUGUUUUAACUCAC&UUGAGU-AAUAUAUCGGGAAAU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN3338_c0_g1_2061_TPlot.pdf
TRINITY_DN3338_c0_g1:242	si_s490	TRINITY_DN3338_c0_g1	231	251	242	-17.80	-13.80	0.775280898876405	6	1-11,251-241;14-21,238-231	12-13,240-239[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	UUUUGUUUUCGUUUAAGUGAA&UUUAUUUAAAUAUAAACAAAA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN3338_c0_g1_242_TPlot.pdf
TRINITY_DN3338_c0_g1:243	si_s489	TRINITY_DN3338_c0_g1	232	252	243	-17.90	-13.00	0.726256983240223	6	2-12,251-241;15-21,238-232	1-1,252-252[UP5];13-14,240-239[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	UUUGUUUUCGUUUAAGUGAAG&AUUUAUUUAAAUAUAAACAAA	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN3338_c0_g1_243_TPlot.pdf
TRINITY_DN33390_c0_g2:471	si_a892	TRINITY_DN33390_c0_g2	460	480	471	-21.30	-14.30	0.671361502347418	3.5	2-21,479-460	1-1,480-480[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AUUGUUUGUUAUUAUUAUAUA&AAUAUAGUAAUAAUAAGUAAU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN33390_c0_g2_471_TPlot.pdf
TRINITY_DN33390_c0_g2:487	si_s430	TRINITY_DN33390_c0_g2	476	496	487	-21.30	-14.10	0.661971830985915	6	3-12,494-485;14-19,483-478	1-2,496-495[UP5];13-13,484-484[SIL];20-21,477-476[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	AUAUAUGUUAUUAUUGUUAAC&UAUAACAAUAAUUACAUAUUA	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN33390_c0_g2_487_TPlot.pdf
TRINITY_DN3339_c0_g1:843	si_a759	TRINITY_DN3339_c0_g1	830	852	843	-32.60	-22.10	0.677914110429448	9.5	1-5,852-848;7-11,846-842;12-20,839-831	6-6,847-847[SIL];x-x,841-840[BULt];21-21,830-830[UP3]	.(((((((((..(((((.(((((&))))).)))))--))))))))).	ACAGUUGAAAAUGCCCAUAGGAG&CUCCUUUGGGU--UUUUGAUUGA	4	0.999964968133447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN3339_c0_g1_843_TPlot.pdf
TRINITY_DN3339_c0_g1:844	si_a758	TRINITY_DN3339_c0_g1	831	853	844	-34.00	-22.50	0.661764705882353	9.5	2-6,852-848;8-12,846-842;13-21,839-831	1-1,853-853[UP5];7-7,847-847[SIL];x-x,841-840[BULt]	(((((((((..(((((.(((((.&.))))).)))))--)))))))))	CAGUUGAAAAUGCCCAUAGGAGA&CCUCCUUUGGGU--UUUUGAUUG	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN3339_c0_g1_844_TPlot.pdf
TRINITY_DN333_c0_g1:1113	si_s77	TRINITY_DN333_c0_g1	1102	1122	1113	-25.50	-17.20	0.674509803921569	9.5	2-6,1121-1117;8-19,1115-1104	1-1,1122-1122[UP5];7-7,1116-1116[SIL];20-21,1103-1102[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	UUGGGGAGGAGAGACAGAAGC&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN333_c0_g1_1113_TPlot.pdf
TRINITY_DN333_c0_g1:1114	si_s76	TRINITY_DN333_c0_g1	1103	1123	1114	-23.60	-17.20	0.728813559322034	10.5	3-7,1121-1117;9-20,1115-1104	1-2,1123-1122[UP5];8-8,1116-1116[SIL];21-21,1103-1103[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGGGGAGGAGAGACAGAAGCU&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN333_c0_g1_1114_TPlot.pdf
TRINITY_DN333_c0_g1:1115	si_s75	TRINITY_DN333_c0_g1	1104	1124	1115	-24.00	-17.20	0.716666666666667	11	4-8,1121-1117;10-21,1115-1104	1-3,1124-1122[UP5];9-9,1116-1116[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GGGGAGGAGAGACAGAAGCUC&UAUUUUUUUUCUUUCCUUUCU	2	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN333_c0_g1_1115_TPlot.pdf
TRINITY_DN3340_c0_g1:1316	si_s573	TRINITY_DN3340_c0_g1	1305	1325	1316	-28.40	-20.30	0.714788732394366	7	1-8,1325-1318;11-16,1315-1310;19-20,1307-1306	9-10,1317-1316[SIL];17-18,1309-1308[SIL];21-21,1305-1305[UP3]	.((..((((((..((((((((&))))))))..))))))..)).	GGAGAUUUUUACGCCUUGUCC&GGACAAGGAAUAAAAAAAUCA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s573_TRINITY_DN3340_c0_g1_1316_TPlot.pdf
TRINITY_DN33410_c0_g1:1014	si_a784	TRINITY_DN33410_c0_g1	1003	1025	1014	-24.70	-16.40	0.663967611336032	10	3-8,1023-1018;9-21,1015-1003	1-2,1025-1024[UP5];x-x,1017-1016[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	AAGAUGGAAAAAUCUGGAGGAAA&ACUCUUCU--AUUUUUCUAUUUU	2	0.999999999996654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN33410_c0_g1_1014_TPlot.pdf
TRINITY_DN3342_c0_g1:847	si_s82	TRINITY_DN3342_c0_g1	836	856	847	-28.90	-18.90	0.653979238754325	7	1-9,856-848;11-14,846-843;16-19,841-838	10-10,847-847[SIL];15-15,842-842[SIL];20-21,837-836[UP3]	..((((.((((.(((((((((&))))))))).)))).))))..	GCGAAGUAGAGUGGGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3342_c0_g1_847_TPlot.pdf
TRINITY_DN3347_c0_g1:406	si_a312	TRINITY_DN3347_c0_g1	395	415	406	-31.20	-20.30	0.650641025641026	9	1-8,415-408;10-14,406-402	9-9,407-407[SIL];15-21,401-395[UP3]	.......(((((.((((((((&)))))))).))))).......	AUAUUUAGGAUACAUCCAAGC&GCUUGGAUUUAUCCAUGAUUU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN3347_c0_g1_406_TPlot.pdf
TRINITY_DN3347_c0_g1:412	si_a306	TRINITY_DN3347_c0_g1	401	421	412	-33.50	-23.10	0.68955223880597	5	2-5,420-417;7-14,415-408;16-20,406-402	1-1,421-421[UP5];6-6,416-416[SIL];15-15,407-407[SIL];21-21,401-401[UP3]	.(((((.((((((((.((((.&.)))).)))))))).))))).	AGGAUACAUCCAAGCAAAUCC&AGAUUCGCUUGGAUUUAUCCA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN3347_c0_g1_412_TPlot.pdf
TRINITY_DN3347_c0_g1:413	si_a305	TRINITY_DN3347_c0_g1	402	422	413	-32.80	-22.60	0.689024390243902	6	3-6,420-417;8-15,415-408;17-21,406-402	1-2,422-421[UP5];7-7,416-416[SIL];16-16,407-407[SIL]	(((((.((((((((.((((..&..)))).)))))))).)))))	GGAUACAUCCAAGCAAAUCCA&AAGAUUCGCUUGGAUUUAUCC	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN3347_c0_g1_413_TPlot.pdf
TRINITY_DN3348_c0_g1:3618	si_s436	TRINITY_DN3348_c0_g1	3607	3627	3618	-19.60	-14.90	0.760204081632653	10	2-5,3626-3623;8-20,3620-3608	1-1,3627-3627[UP5];6-7,3622-3621[SIL];21-21,3607-3607[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AAUGUGUGGUGUGUUUUUGUA&AAUAAUUACAUAUUAUAUAUA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN3348_c0_g1_3618_TPlot.pdf
TRINITY_DN334_c0_g1:263	si_a383	TRINITY_DN334_c0_g1	251	274	263	-24.80	-16.20	0.653225806451613	8.5	1-7,274-268;8-14,265-259;15-20,257-252	x-x,267-266[BULt];x-x,258-258[BULt];21-21,251-251[UP3]	.((((((.(((((((..(((((((&)))))))--)))))))-)))))).	GAUGUUCAUUAGUUCCUGAAGUCA&UGAUUUC--GAAUUAA-GAAUAUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a383_TRINITY_DN334_c0_g1_263_TPlot.pdf
TRINITY_DN3351_c0_g1:1166	si_s76	TRINITY_DN3351_c0_g1	1154	1175	1166	-23.60	-17.00	0.720338983050847	5.5	1-3,1175-1173;5-14,1171-1162;15-21,1160-1154	4-4,1172-1172[SIL];x-x,1161-1161[BULt]	(((((((.((((((((((.(((&))).))))))))))-)))))))	AAGGAAGUGAAAGAAAAGUAGU&AUUUUUUUUCUUUC-CUUUCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3351_c0_g1_1166_TPlot.pdf
TRINITY_DN3354_c0_g1:1248	si_a214	TRINITY_DN3354_c0_g1	1237	1257	1248	-28.80	-19.08	0.6625	9.5	1-7,1257-1251;11-19,1247-1239	8-10,1250-1248[SIL];20-21,1238-1237[UP3]	..(((((((((...(((((((&)))))))...)))))))))..	CUCGUGAGUUUCGAUGGUCGA&UCGACUAAUUAAACUCAUGUU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a214_TRINITY_DN3354_c0_g1_1248_TPlot.pdf
TRINITY_DN3354_c0_g1:3349	si_a556	TRINITY_DN3354_c0_g1	3335	3358	3349	-33.40	-24.90	0.745508982035928	10	2-12,3357-3347;13-19,3343-3337	1-1,3358-3358[UP5];x-x,3346-3344[BULt];20-21,3336-3335[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	UGCACGGGGGCUAGAUAAAGAAGG&AUUUCUUUAUCU---CCCCGUGAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN3354_c0_g1_3349_TPlot.pdf
TRINITY_DN3354_c0_g1:3350	si_a555	TRINITY_DN3354_c0_g1	3336	3359	3350	-33.70	-24.90	0.738872403560831	8	3-13,3357-3347;14-20,3343-3337	1-2,3359-3358[UP5];x-x,3346-3344[BULt];21-21,3336-3336[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	GCACGGGGGCUAGAUAAAGAAGGG&UAUUUCUUUAUCU---CCCCGUGA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN3354_c0_g1_3350_TPlot.pdf
TRINITY_DN3354_c0_g1:3725	si_a639	TRINITY_DN3354_c0_g1	3715	3734	3725	-23.60	-17.00	0.720338983050847	7	1-11,3734-3724;13-19,3723-3717	12-12,x-x[BULq];20-21,3716-3715[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	CAAUAUUAC-CAAAGGGAUCG&CGAUUUUUUUGAGUAAUAUAU	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN3354_c0_g1_3725_TPlot.pdf
TRINITY_DN3354_c0_g1:4668	si_s92	TRINITY_DN3354_c0_g1	4656	4677	4668	-34.90	-25.40	0.727793696275072	7.5	2-12,4676-4666;14-20,4663-4657	1-1,4677-4677[UP5];13-13,4665-4664[AILt];21-21,4656-4656[UP3]	.(((((((..(((((((((((.&.)))))))))))-.))))))).	CUCCGGAGGAGGAGAAGAAGGC&UUCUUCUUCUUC-GCUUCGGAU	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3354_c0_g1_4668_TPlot.pdf
TRINITY_DN3354_c0_g1:4669	si_s91	TRINITY_DN3354_c0_g1	4657	4678	4669	-34.70	-25.30	0.729106628242075	7.5	3-13,4676-4666;15-21,4663-4657	1-2,4678-4677[UP5];14-14,4665-4664[AILt]	(((((((..(((((((((((..&..)))))))))))-.)))))))	UCCGGAGGAGGAGAAGAAGGCG&UUUCUUCUUCUUC-GCUUCGGA	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3354_c0_g1_4669_TPlot.pdf
TRINITY_DN33556_c0_g1:258	si_a348	TRINITY_DN33556_c0_g1	247	271	258	-21.10	-13.90	0.658767772511848	11.5	1-5,271-267;6-18,262-250	x-x,266-263[BULt];19-21,249-247[UP3]	...(((((((((((((....(((((&)))))----)))))))))))))...	UUCAUGGAAUUAAUAUAGAAUUUCG&CGAAA----AUAUUAAUUCUAUUUU	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN33556_c0_g1_258_TPlot.pdf
TRINITY_DN3355_c0_g1:10519	si_a895	TRINITY_DN3355_c0_g1	10508	10527	10519	-21.70	-15.00	0.691244239631336	9	1-8,10527-10520;11-19,10518-10510	9-10,10519-10519[AILq];20-21,10509-10508[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	CUUGUUGCUUAG-GUUGCUAU&AUAGUAAUAAUAAGUAAUAUA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN3355_c0_g1_10519_TPlot.pdf
TRINITY_DN3355_c0_g1:179	si_s322	TRINITY_DN3355_c0_g1	168	189	179	-31.50	-20.90	0.663492063492063	8	2-8,188-182;9-9,180-180;12-20,177-169	1-1,189-189[UP5];x-x,181-181[BULt];10-11,179-178[SIL];21-21,168-168[UP3]	.(((((((((..(.(((((((.&.)))))))-)..))))))))).	UGUAUGUUUGGGAUCAAGAAGA&CCUUCUUG-UUACAAACAUACG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s322_TRINITY_DN3355_c0_g1_179_TPlot.pdf
TRINITY_DN3355_c0_g1:188	si_s527	TRINITY_DN3355_c0_g1	178	197	188	-28.00	-19.20	0.685714285714286	7.5	3-6,195-192;8-10,190-188;12-21,187-178	1-2,197-196[UP5];7-7,191-191[SIL];11-11,x-x[BULq]	((((((((((-(((.((((..&..)))).))).))))))))))	GGAUCAAGAA-GAUGUCGACA&AUUCGAAAUCAUUUUUGAUCC	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN3355_c0_g1_188_TPlot.pdf
TRINITY_DN3355_c0_g1:2867	si_s13	TRINITY_DN3355_c0_g1	2856	2876	2867	-22.90	-14.90	0.650655021834061	10	5-20,2872-2857	1-4,2876-2873[UP5];21-21,2856-2856[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAAUUGAUAUAGUAGUAUCGG&UUAUUAUUACUAUAUUGAUUG	2	0.998227013304557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN3355_c0_g1_2867_TPlot.pdf
TRINITY_DN3355_c0_g1:878	si_s771	TRINITY_DN3355_c0_g1	866	887	878	-25.20	-18.50	0.734126984126984	8	1-12,887-876;13-17,874-870	x-x,875-875[BULt];18-21,869-866[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	CAACAGCAAUUAGUAGUUAGUC&GAUUAAUUACUA-UUGCUAUAA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN3355_c0_g1_878_TPlot.pdf
TRINITY_DN3355_c0_g1:9646	si_s75	TRINITY_DN3355_c0_g1	9635	9655	9646	-24.00	-17.70	0.7375	6.5	1-16,9655-9640	17-21,9639-9635[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAUUGGAAAGAGAAAAAAUG&UAUUUUUUUUCUUUCCUUUCU	2	0.999999990944282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3355_c0_g1_9646_TPlot.pdf
TRINITY_DN3355_c0_g1:9649	si_s72	TRINITY_DN3355_c0_g1	9638	9658	9649	-24.10	-22.40	0.929460580912863	5	2-19,9657-9640	1-1,9658-9658[UP5];20-21,9639-9638[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUGGAAAGAGAAAAAAUGGAU&UUCUAUUUUUUUUCUUUCCUU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3355_c0_g1_9649_TPlot.pdf
TRINITY_DN3355_c0_g1:9650	si_s71	TRINITY_DN3355_c0_g1	9639	9659	9650	-25.70	-22.70	0.883268482490272	4.5	1-1,9659-9659;3-20,9657-9640	2-2,9658-9658[SIL];21-21,9639-9639[UP3]	.((((((((((((((((((.(&).)))))))))))))))))).	UGGAAAGAGAAAAAAUGGAUG&CUUCUAUUUUUUUUCUUUCCU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3355_c0_g1_9650_TPlot.pdf
TRINITY_DN3355_c0_g1:9651	si_s70	TRINITY_DN3355_c0_g1	9640	9660	9651	-25.80	-22.50	0.872093023255814	4.5	2-2,9659-9659;4-21,9657-9640	1-1,9660-9660[UP5];3-3,9658-9658[SIL]	((((((((((((((((((.(.&.).))))))))))))))))))	GGAAAGAGAAAAAAUGGAUGG&ACUUCUAUUUUUUUUCUUUCC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3355_c0_g1_9651_TPlot.pdf
TRINITY_DN3355_c0_g1:9652	si_s69	TRINITY_DN3355_c0_g1	9641	9661	9652	-23.40	-19.40	0.829059829059829	6.5	3-3,9659-9659;5-21,9657-9641	1-2,9661-9660[UP5];4-4,9658-9658[SIL]	(((((((((((((((((.(..&..).)))))))))))))))))	GAAAGAGAAAAAAUGGAUGGA&AACUUCUAUUUUUUUUCUUUC	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3355_c0_g1_9652_TPlot.pdf
TRINITY_DN3355_c0_g1:9653	si_s68	TRINITY_DN3355_c0_g1	9642	9662	9653	-23.10	-16.20	0.701298701298701	8.5	4-4,9659-9659;6-21,9657-9642	1-3,9662-9660[UP5];5-5,9658-9658[SIL]	((((((((((((((((.(...&...).))))))))))))))))	AAAGAGAAAAAAUGGAUGGAU&CAACUUCUAUUUUUUUUCUUU	2	0.99999976093547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3355_c0_g1_9653_TPlot.pdf
TRINITY_DN3355_c0_g1:9654	si_a317	TRINITY_DN3355_c0_g1	9643	9663	9654	-24.30	-18.00	0.740740740740741	7	1-11,9663-9653;14-20,9650-9644	12-13,9652-9651[SIL];21-21,9643-9643[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AAGAGAAAAAAUGGAUGGAUC&GAUUUAUCCAUGAUUUUUUUA	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN3355_c0_g1_9654_TPlot.pdf
TRINITY_DN3355_c0_g1:9655	si_a316	TRINITY_DN3355_c0_g1	9644	9664	9655	-26.30	-17.70	0.673003802281369	6	2-12,9663-9653;15-21,9650-9644	1-1,9664-9664[UP5];13-14,9652-9651[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AGAGAAAAAAUGGAUGGAUCA&GGAUUUAUCCAUGAUUUUUUU	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN3355_c0_g1_9655_TPlot.pdf
TRINITY_DN3355_c0_g1:9948	si_a68	TRINITY_DN3355_c0_g1	9936	9957	9948	-25.40	-16.90	0.665354330708661	7.5	1-10,9957-9948;11-17,9946-9940;20-21,9937-9936	x-x,9947-9947[BULt];18-19,9939-9938[SIL]	((..(((((((.((((((((((&))))))))))-)))))))..))	UGCUGAGCGGUAUUGAGAGAAG&CUUCUUUCAA-AUUGUUUUUCA	3	0.999999999995883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3355_c0_g1_9948_TPlot.pdf
TRINITY_DN3357_c0_g1:1960	si_a142	TRINITY_DN3357_c0_g1	1949	1969	1960	-23.50	-15.40	0.65531914893617	14.5	7-18,1963-1952	1-6,1969-1964[UP5];19-21,1951-1949[UP3]	...((((((((((((......&......))))))))))))...	ACUAAGCAACAACGAAAAGAA&AAUUAAUCGUUGUUGUUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3357_c0_g1_1960_TPlot.pdf
TRINITY_DN3357_c0_g1:2291	si_s87	TRINITY_DN3357_c0_g1	2280	2300	2291	-32.90	-21.70	0.659574468085106	9.5	5-19,2296-2282	1-4,2300-2297[UP5];20-21,2281-2280[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUGUGAAGAAGAAGAAAUCUU&UUCCUUUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3357_c0_g1_2291_TPlot.pdf
TRINITY_DN3359_c0_g1:2098	si_a573	TRINITY_DN3359_c0_g1	2087	2108	2098	-28.70	-19.30	0.672473867595819	6	1-5,2108-2104;6-18,2102-2090	x-x,2103-2103[BULt];19-21,2089-2087[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	UAUUUACAAACAUAUGUAUUCA&UGAAU-CGUAUGUUUGUAACAA	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN3359_c0_g1_2098_TPlot.pdf
TRINITY_DN3359_c0_g1:944	si_a310	TRINITY_DN3359_c0_g1	933	953	944	-33.70	-22.50	0.667655786350148	6	1-9,953-945;11-12,943-942;14-18,940-936	10-10,944-944[SIL];13-13,941-941[SIL];19-21,935-933[UP3]	...(((((.((.(((((((((&))))))))).)).)))))...	CAAAUGGAAAAUUCCAAGCGA&UCGCUUGGAUUUAUCCAUGAU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN3359_c0_g1_944_TPlot.pdf
TRINITY_DN3359_c0_g1:978	si_a400	TRINITY_DN3359_c0_g1	966	987	978	-22.80	-16.70	0.732456140350877	9.5	1-10,987-978;11-18,976-969	x-x,977-977[BULt];19-21,968-966[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	AAGGAACAAGGUCGAUUCUGUA&UAUAGAAUUG-UUUUGUUUAUA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN3359_c0_g1_978_TPlot.pdf
TRINITY_DN3359_c0_g1:980	si_a398	TRINITY_DN3359_c0_g1	968	989	980	-22.40	-18.20	0.8125	7.5	2-12,988-978;13-20,976-969	1-1,989-989[UP5];x-x,977-977[BULt];21-21,968-968[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	GGAACAAGGUCGAUUCUGUAUA&AAUAUAGAAUUG-UUUUGUUUA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3359_c0_g1_980_TPlot.pdf
TRINITY_DN335_c0_g1:231	si_s795	TRINITY_DN335_c0_g1	220	239	231	-30.30	-19.80	0.653465346534653	9	4-8,236-232;10-21,231-220	1-3,239-237[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	ACGAGGAUGAAA-ACGGGAUA&AAGCUCGUAUUUUAUCUUCGU	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN335_c0_g1_231_TPlot.pdf
TRINITY_DN335_c0_g1:307	si_a893	TRINITY_DN335_c0_g1	296	316	307	-21.70	-15.50	0.714285714285714	4	2-14,315-303;16-21,301-296	1-1,316-316[UP5];15-15,302-302[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	UGUUGCCUAUUAUUAUUAUAG&AUAUAGUAAUAAUAAGUAAUA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN335_c0_g1_307_TPlot.pdf
TRINITY_DN335_c0_g1:511	si_s51	TRINITY_DN335_c0_g1	501	520	511	-30.70	-20.90	0.680781758957655	7	1-11,520-510;13-18,509-504;20-21,502-501	12-12,x-x[BULq];19-19,503-503[SIL]	((.((((((-(((((((((((&))))))))))).)))))).))	GUCGUUGAC-UGGAGUCCAGU&AUUGGAUUUCAAGUUAGCAAC	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN335_c0_g1_511_TPlot.pdf
TRINITY_DN335_c0_g1:513	si_s49	TRINITY_DN335_c0_g1	503	522	513	-29.30	-20.60	0.703071672354949	9	3-13,520-510;15-20,509-504	1-2,522-521[UP5];14-14,x-x[BULq];21-21,503-503[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CGUUGAC-UGGAGUCCAGUGG&UAAUUGGAUUUCAAGUUAGCA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN335_c0_g1_513_TPlot.pdf
TRINITY_DN335_c0_g1:514	si_s48	TRINITY_DN335_c0_g1	504	523	514	-28.80	-20.20	0.701388888888889	10	4-14,520-510;16-21,509-504	1-3,523-521[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GUUGAC-UGGAGUCCAGUGGC&AUAAUUGGAUUUCAAGUUAGC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN335_c0_g1_514_TPlot.pdf
TRINITY_DN33626_c0_g1:110	si_s660	TRINITY_DN33626_c0_g1	99	119	110	-35.00	-23.80	0.68	7.5	2-17,118-103	1-1,119-119[UP5];18-21,102-99[UP3]	....((((((((((((((((.&.))))))))))))))))....	UCAGAAUUUGAUCUCCCGGUC&AAUCGGGGGAUCGAAUUGAUU	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN33626_c0_g1_110_TPlot.pdf
TRINITY_DN33633_c0_g1:189	si_a13	TRINITY_DN33633_c0_g1	177	198	189	-26.80	-18.20	0.67910447761194	8	4-13,195-186;15-21,183-177	1-3,198-196[UP5];14-14,185-184[AILt]	(((((((..((((((((((...&...))))))))))-.)))))))	AAGAAUAUUGUAGGCUUUCGAA&AGAGAAAGCCUAU-UUAUUUUU	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN33633_c0_g1_189_TPlot.pdf
TRINITY_DN33633_c2_g1:158	si_a318	TRINITY_DN33633_c2_g1	147	168	158	-22.50	-14.70	0.653333333333333	12.5	4-9,165-160;10-19,158-149	1-3,168-166[UP5];x-x,159-159[BULt];20-21,148-147[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	AAGAAGAAGUCAUUGGGUGCCA&AUUUAUCCA-UGAUUUUUUUAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN33633_c2_g1_158_TPlot.pdf
TRINITY_DN3363_c0_g1:816	si_a786	TRINITY_DN3363_c0_g1	802	825	816	-26.60	-17.40	0.654135338345865	9	2-10,824-816;11-17,813-807;19-21,804-802	1-1,825-825[UP5];x-x,815-814[BULt];18-18,806-805[AILt]	(((..(((((((..(((((((((.&.)))))))))--)))))))-.)))	GGAUUAAUAGAAACAAGUGGAAGG&UCUUCUAUUU--UUCUAUU-UUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3363_c0_g1_816_TPlot.pdf
TRINITY_DN33644_c0_g1:318	si_a401	TRINITY_DN33644_c0_g1	307	327	318	-22.60	-18.20	0.805309734513274	4	1-5,327-323;7-19,321-309	6-6,322-322[SIL];20-21,308-307[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AGAUAAACAAAACAAAUCUAU&AUAGAAUUGUUUUGUUUAUAU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN33644_c0_g1_318_TPlot.pdf
TRINITY_DN3364_c0_g1:2532	si_a470	TRINITY_DN3364_c0_g1	2521	2541	2532	-21.30	-13.90	0.652582159624413	9.5	3-9,2539-2533;12-20,2530-2522	1-2,2541-2540[UP5];10-11,2532-2531[SIL];21-21,2521-2521[UP3]	.(((((((((..(((((((..&..)))))))..))))))))).	AAUAAUAAUAUGUGCAUAUAG&UAAUAUGUAAUUAUUGUUAUA	4	0.99999992536643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN3364_c0_g1_2532_TPlot.pdf
TRINITY_DN3365_c0_g1:467	si_s422	TRINITY_DN3365_c0_g1	455	476	467	-21.30	-14.70	0.690140845070423	6	1-11,476-466;12-17,464-459;19-21,457-455	x-x,465-465[BULt];18-18,458-458[SIL]	(((.((((((.(((((((((((&)))))))))))-)))))).)))	AGUCGUUGUUGGUAUAGGAUAU&AUAUUCUAUAU-AACAAUAAUU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN3365_c0_g1_467_TPlot.pdf
TRINITY_DN3366_c0_g1:3215	si_a321	TRINITY_DN3366_c0_g1	3202	3224	3215	-26.70	-18.40	0.689138576779026	7.5	2-10,3223-3215;12-18,3213-3207;19-21,3204-3202	1-1,3224-3224[UP5];11-11,3214-3214[SIL];x-x,3206-3205[BULt]	(((..(((((((.(((((((((.&.))))))))).)))))))--)))	GGACAAUGAAAGCGUCAUGGAUC&UAUCCAUGAUUUUUUUAU--UCC	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3366_c0_g1_3215_TPlot.pdf
TRINITY_DN3366_c0_g1:3216	si_a320	TRINITY_DN3366_c0_g1	3205	3225	3216	-24.40	-16.70	0.684426229508197	8	3-11,3223-3215;13-20,3213-3206	1-2,3225-3224[UP5];12-12,3214-3214[SIL];21-21,3205-3205[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	CAAUGAAAGCGUCAUGGAUCA&UUAUCCAUGAUUUUUUUAUUC	2	0.998733041046006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN3366_c0_g1_3216_TPlot.pdf
TRINITY_DN33687_c0_g1:212	si_a67	TRINITY_DN33687_c0_g1	201	221	212	-27.20	-17.98	0.661029411764706	8.5	1-6,221-216;8-10,214-212;14-21,208-201	7-7,215-215[SIL];11-13,211-209[SIL]	((((((((...(((.((((((&)))))).)))...))))))))	GAAAAACGCCAUGAUGGAAGC&GCUUCUUUCAAAUUGUUUUUC	1	0.284908502804182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN33687_c0_g1_212_TPlot.pdf
TRINITY_DN3368_c0_g1:3186	si_a318	TRINITY_DN3368_c0_g1	3174	3195	3186	-22.50	-16.00	0.711111111111111	10.5	5-10,3191-3186;11-21,3184-3174	1-4,3195-3192[UP5];x-x,3185-3185[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	AUGAGAAGAUCAAUGGAUUGGA&AUUUAUCCAU-GAUUUUUUUAU	2	0.999606753440389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3368_c0_g1_3186_TPlot.pdf
TRINITY_DN3368_c0_g1:6464	si_a689	TRINITY_DN3368_c0_g1	6452	6475	6464	-38.00	-25.30	0.665789473684211	9	1-5,6475-6471;6-13,6468-6461;14-14,6459-6459;16-21,6457-6452	x-x,6470-6469[BULt];x-x,6460-6460[BULt];15-15,6458-6458[SIL]	((((((.(.((((((((..(((((&)))))--))))))))-).))))))	ACCAGUCGAUGUUUGAGACGCCGC&GCGGU--UUCGAACA-CAACUGGU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a689_TRINITY_DN3368_c0_g1_6464_TPlot.pdf
TRINITY_DN3368_c0_g1:6465	si_a688	TRINITY_DN3368_c0_g1	6453	6476	6465	-38.70	-26.10	0.674418604651163	9	1-6,6476-6471;7-14,6468-6461;15-15,6459-6459;17-21,6457-6453	x-x,6470-6469[BULt];x-x,6460-6460[BULt];16-16,6458-6458[SIL]	(((((.(.((((((((..((((((&))))))--))))))))-).)))))	CCAGUCGAUGUUUGAGACGCCGCG&CGCGGU--UUCGAACA-CAACUGG	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a688_TRINITY_DN3368_c0_g1_6465_TPlot.pdf
TRINITY_DN3368_c0_g1:6487	si_a626	TRINITY_DN3368_c0_g1	6476	6501	6487	-30.20	-19.86	0.657615894039735	21	2-6,6500-6496;11-21,6486-6476	1-1,6501-6501[UP5];7-10,6495-6487[AILt]	(((((((((((.........(((((.&.)))))-----....)))))))))))	GAGAAUCGACGGAGGCAGAGACGCCG&AGGCGU-----AUUAUGUCGAUUUUU	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN3368_c0_g1_6487_TPlot.pdf
TRINITY_DN3368_c0_g1:6523	si_s375	TRINITY_DN3368_c0_g1	6511	6532	6523	-44.10	-29.30	0.664399092970522	9	3-12,6530-6521;14-15,6519-6518;16-21,6516-6511	1-2,6532-6531[UP5];13-13,6520-6520[SIL];x-x,6517-6517[BULt]	((((((.((.((((((((((..&..)))))))))).))-))))))	GGGGUGUGGGGCGUGAGCGAGA&GAUCGCUCGCGUGUC-CGCCUU	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN3368_c0_g1_6523_TPlot.pdf
TRINITY_DN336_c0_g1:757	si_a408	TRINITY_DN336_c0_g1	746	766	757	-20.10	-16.10	0.800995024875622	8.5	1-16,766-751	17-21,750-746[UP3]	.....((((((((((((((((&)))))))))))))))).....	GGUAGAAGUGUAGACGAAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN336_c0_g1_757_TPlot.pdf
TRINITY_DN336_c0_g1:760	si_a405	TRINITY_DN336_c0_g1	749	769	760	-19.80	-16.20	0.818181818181818	10	4-19,766-751	1-3,769-767[UP5];20-21,750-749[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGAAGUGUAGACGAAACACUG&AAUUGUUUUGUUUAUAUUUAA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN336_c0_g1_760_TPlot.pdf
TRINITY_DN336_c0_g1:761	si_a404	TRINITY_DN336_c0_g1	750	770	761	-21.70	-16.20	0.746543778801843	10.5	5-20,766-751	1-4,770-767[UP5];21-21,750-750[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAAGUGUAGACGAAACACUGA&GAAUUGUUUUGUUUAUAUUUA	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN336_c0_g1_761_TPlot.pdf
TRINITY_DN336_c0_g1:762	si_a403	TRINITY_DN336_c0_g1	751	771	762	-22.00	-15.80	0.718181818181818	11.5	6-21,766-751	1-5,771-767[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGUGUAGACGAAACACUGAG&AGAAUUGUUUUGUUUAUAUUU	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN336_c0_g1_762_TPlot.pdf
TRINITY_DN336_c0_g1:763	si_a402	TRINITY_DN336_c0_g1	752	772	763	-22.40	-14.90	0.665178571428572	13.5	7-21,766-752	1-6,772-767[UP5]	(((((((((((((((......&......)))))))))))))))	AGUGUAGACGAAACACUGAGA&UAGAAUUGUUUUGUUUAUAUU	4	0.999999999964765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN336_c0_g1_763_TPlot.pdf
TRINITY_DN33707_c0_g1:405	si_a17	TRINITY_DN33707_c0_g1	394	414	405	-24.30	-17.20	0.707818930041152	8	1-7,414-408;10-13,405-402;16-21,399-394	8-9,407-406[SIL];14-15,401-400[SIL]	((((((..((((..(((((((&)))))))..))))..))))))	GGCUGAUUGUAAUGAGGCUUU&AAAGCCUAUUUAUUUUUAGUU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN33707_c0_g1_405_TPlot.pdf
TRINITY_DN33717_c1_g1:100	si_a783	TRINITY_DN33717_c1_g1	88	109	100	-24.70	-16.10	0.651821862348178	12	3-10,107-100;12-18,97-91	1-2,109-108[UP5];11-11,99-98[AILt];19-21,90-88[UP3]	...(((((((..((((((((..&..))))))))-.)))))))...	AUUUGGAAGACUUGGAAGAGGA&AACUCUUCUA-UUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN33717_c1_g1_100_TPlot.pdf
TRINITY_DN33717_c1_g1:117	si_a786	TRINITY_DN33717_c1_g1	107	124	117	-26.60	-18.34	0.689473684210526	9.5	1-8,124-117;13-21,115-107	9-12,116-116[AILq]	(((((((((.---((((((((&))))))))....)))))))))	GGAAGAUAGU---GUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999995082417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN33717_c1_g1_117_TPlot.pdf
TRINITY_DN33717_c1_g1:97	si_a785	TRINITY_DN33717_c1_g1	84	107	97	-25.90	-17.90	0.691119691119691	9	1-8,107-100;10-15,97-92;16-21,89-84	9-9,99-98[AILt];x-x,91-90[BULt]	((((((..((((((..((((((((&))))))))-.))))))--))))))	GAAGAUUUGGAAGACUUGGAAGAG&CUCUUCUA-UUUUUCU--AUUUUC	4	0.999999999989358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN33717_c1_g1_97_TPlot.pdf
TRINITY_DN33717_c1_g1:98	si_a784	TRINITY_DN33717_c1_g1	87	108	98	-24.70	-16.50	0.668016194331984	10	2-9,107-100;11-17,97-91;20-21,88-87	1-1,108-108[UP5];10-10,99-98[AILt];18-19,90-89[SIL]	((..(((((((..((((((((.&.))))))))-.)))))))..))	GAUUUGGAAGACUUGGAAGAGG&ACUCUUCUA-UUUUUCUAUUUU	2	0.999999999947624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN33717_c1_g1_98_TPlot.pdf
TRINITY_DN3371_c0_g1:1643	si_a72	TRINITY_DN3371_c0_g1	1632	1652	1643	-21.90	-14.40	0.657534246575343	9	2-7,1651-1646;9-17,1644-1636	1-1,1652-1652[UP5];8-8,1645-1645[SIL];18-21,1635-1632[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	ACAUUGGAGAGCAUUUUGAAC&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN3371_c0_g1_1643_TPlot.pdf
TRINITY_DN3371_c0_g1:1789	si_a675	TRINITY_DN3371_c0_g1	1773	1798	1789	-34.00	-23.60	0.694117647058824	14	1-11,1798-1788;12-16,1782-1778;18-21,1776-1773	x-x,1787-1783[BULt];17-17,1777-1777[SIL]	((((.(((((.....(((((((((((&)))))))))))-----))))).))))	AGAUGGCGUGGUAGGGAUAGGGAAUC&GAUUCCUUAUU-----CACGCGGUUU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN3371_c0_g1_1789_TPlot.pdf
TRINITY_DN3371_c0_g1:1790	si_a674	TRINITY_DN3371_c0_g1	1774	1799	1790	-34.70	-22.90	0.659942363112392	15	2-12,1798-1788;13-17,1782-1778;19-21,1776-1774	1-1,1799-1799[UP5];x-x,1787-1783[BULt];18-18,1777-1777[SIL]	(((.(((((.....(((((((((((.&.)))))))))))-----))))).)))	GAUGGCGUGGUAGGGAUAGGGAAUCC&UGAUUCCUUAUU-----CACGCGGUU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN3371_c0_g1_1790_TPlot.pdf
TRINITY_DN3371_c0_g1:428	si_s502	TRINITY_DN3371_c0_g1	414	437	428	-22.40	-14.60	0.651785714285714	11.5	5-16,433-422;17-21,418-414	1-4,437-434[UP5];x-x,421-419[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	GAUGUUCCAGAGUUGUUUUGGGGA&UAAACAAAACAAUUCU---AUAUU	2	0.921055828159047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN3371_c0_g1_428_TPlot.pdf
TRINITY_DN3371_c0_g1:565	si_a191	TRINITY_DN3371_c0_g1	554	574	565	-32.00	-22.30	0.696875	11	4-16,571-559	1-3,574-572[UP5];17-21,558-554[UP3]	.....(((((((((((((...&...))))))))))))).....	CUGGUGUGAACAGGGAGAUAA&AUCUUUCCCUGUUCACUAAUA	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN3371_c0_g1_565_TPlot.pdf
TRINITY_DN3371_c0_g1:568	si_a188	TRINITY_DN3371_c0_g1	557	577	568	-32.00	-22.30	0.696875	14	7-19,571-559	1-6,577-572[UP5];20-21,558-557[UP3]	..(((((((((((((......&......)))))))))))))..	GUGUGAACAGGGAGAUAACCU&AAUAUCUUUCCCUGUUCACUA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN3371_c0_g1_568_TPlot.pdf
TRINITY_DN3371_c0_g1:569	si_a187	TRINITY_DN3371_c0_g1	558	578	569	-32.00	-22.30	0.696875	15	8-20,571-559	1-7,578-572[UP5];21-21,558-558[UP3]	.(((((((((((((.......&.......))))))))))))).	UGUGAACAGGGAGAUAACCUG&UAAUAUCUUUCCCUGUUCACU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN3371_c0_g1_569_TPlot.pdf
TRINITY_DN3371_c0_g1:711	si_s68	TRINITY_DN3371_c0_g1	700	720	711	-23.10	-15.60	0.675324675324675	9	1-14,720-707	15-21,706-700[UP3]	.......((((((((((((((&)))))))))))))).......	GGUCUGCAAGAAUAGAGGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999999999998651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3371_c0_g1_711_TPlot.pdf
TRINITY_DN3372_c0_g1:621	si_a227	TRINITY_DN3372_c0_g1	609	630	621	-26.80	-18.70	0.697761194029851	9.5	1-11,630-620;12-18,618-612	x-x,619-619[BULt];19-21,611-609[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UGGUGGUUAUGGGGGACAUGGG&CUCAUGUUUCU-AUAAUCAAUU	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN3372_c0_g1_621_TPlot.pdf
TRINITY_DN3372_c0_g1:622	si_a226	TRINITY_DN3372_c0_g1	610	631	622	-27.60	-19.30	0.699275362318841	9.5	2-12,630-620;13-19,618-612	1-1,631-631[UP5];x-x,619-619[BULt];20-21,611-610[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	GGUGGUUAUGGGGGACAUGGGC&ACUCAUGUUUCU-AUAAUCAAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN3372_c0_g1_622_TPlot.pdf
TRINITY_DN3372_c0_g1:623	si_a225	TRINITY_DN3372_c0_g1	611	632	623	-27.50	-19.30	0.701818181818182	9	3-13,630-620;14-20,618-612	1-2,632-631[UP5];x-x,619-619[BULt];21-21,611-611[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	GUGGUUAUGGGGGACAUGGGCA&AACUCAUGUUUCU-AUAAUCAA	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN3372_c0_g1_623_TPlot.pdf
TRINITY_DN3372_c0_g1:624	si_a224	TRINITY_DN3372_c0_g1	612	633	624	-27.40	-19.10	0.697080291970803	10	4-14,630-620;15-21,618-612	1-3,633-631[UP5];x-x,619-619[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	UGGUUAUGGGGGACAUGGGCAU&AAACUCAUGUUUCU-AUAAUCA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN3372_c0_g1_624_TPlot.pdf
TRINITY_DN3372_c0_g1:625	si_a223	TRINITY_DN3372_c0_g1	613	634	625	-27.10	-17.70	0.653136531365314	11.5	5-15,630-620;16-21,618-613	1-4,634-631[UP5];x-x,619-619[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GGUUAUGGGGGACAUGGGCAUU&UAAACUCAUGUUUCU-AUAAUC	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN3372_c0_g1_625_TPlot.pdf
TRINITY_DN3377_c0_g1:1879	si_s549	TRINITY_DN3377_c0_g1	1868	1888	1879	-20.50	-13.50	0.658536585365854	9	2-14,1887-1875	1-1,1888-1888[UP5];15-21,1874-1868[UP3]	.......(((((((((((((.&.))))))))))))).......	AGUUCAAAAUUCUGUUUUGAC&AUCAAAAUAGAAUUAAUAUUU	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN3377_c0_g1_1879_TPlot.pdf
TRINITY_DN3378_c0_g1:2007	si_a110	TRINITY_DN3378_c0_g1	1996	2017	2007	-27.80	-18.70	0.672661870503597	7.5	3-8,2015-2010;10-21,2007-1996	1-2,2017-2016[UP5];9-9,2009-2008[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	AAGACAAGCUCGACAUUUUACG&GAUAAAAU-ACGAGCUUGUUUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN3378_c0_g1_2007_TPlot.pdf
TRINITY_DN3379_c0_g1:1235	si_a285	TRINITY_DN3379_c0_g1	1224	1244	1235	-28.30	-18.40	0.65017667844523	14	3-13,1242-1232	1-2,1244-1243[UP5];14-21,1231-1224[UP3]	........(((((((((((..&..)))))))))))........	UGAGAUCUUCCGGGCGGUCGU&AAGAUCGCUUGGAUUUAAAAA	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN3379_c0_g1_1235_TPlot.pdf
TRINITY_DN3379_c0_g1:1561	si_a562	TRINITY_DN3379_c0_g1	1547	1570	1561	-35.60	-23.40	0.657303370786517	12	1-10,1570-1561;11-19,1557-1549	x-x,1560-1558[BULt];20-21,1548-1547[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	GGAUGAUUUAUAAUGGGGAGGUGA&UUAUCUCCCC---GUGAAUCGUAU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a562_TRINITY_DN3379_c0_g1_1561_TPlot.pdf
TRINITY_DN3379_c0_g1:1562	si_a561	TRINITY_DN3379_c0_g1	1548	1571	1562	-35.40	-23.60	0.666666666666667	12	2-11,1570-1561;12-20,1557-1549	1-1,1571-1571[UP5];x-x,1560-1558[BULt];21-21,1548-1548[UP3]	.(((((((((...((((((((((.&.))))))))))---))))))))).	GAUGAUUUAUAAUGGGGAGGUGAU&UUUAUCUCCCC---GUGAAUCGUA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN3379_c0_g1_1562_TPlot.pdf
TRINITY_DN3380_c0_g1:1315	si_s68	TRINITY_DN3380_c0_g1	1304	1324	1315	-23.10	-17.80	0.770562770562771	9	3-18,1322-1307	1-2,1324-1323[UP5];19-21,1306-1304[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCGAAAGGAAGUAGGAGUAA&CAACUUCUAUUUUUUUUCUUU	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3380_c0_g1_1315_TPlot.pdf
TRINITY_DN3380_c0_g1:1318	si_s65	TRINITY_DN3380_c0_g1	1307	1331	1318	-26.00	-18.40	0.707692307692308	12	1-5,1331-1327;6-21,1322-1307	x-x,1326-1323[BULt]	((((((((((((((((....(((((&)))))----))))))))))))))))	GAAAGGAAGUAGGAGUAAUAUGUUG&UAGCA----ACUUCUAUUUUUUUUC	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN3380_c0_g1_1318_TPlot.pdf
TRINITY_DN3380_c0_g1:1322	si_s259	TRINITY_DN3380_c0_g1	1311	1331	1322	-23.60	-15.90	0.673728813559322	10	1-13,1331-1319	14-21,1318-1311[UP3]	........(((((((((((((&)))))))))))))........	GGAAGUAGGAGUAAUAUGUUG&CGAUAUAUUACUCAAAAAAAU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s259_TRINITY_DN3380_c0_g1_1322_TPlot.pdf
TRINITY_DN33814_c0_g1:332	si_a778	TRINITY_DN33814_c0_g1	321	341	332	-28.30	-20.10	0.710247349823322	5.5	1-7,341-335;9-17,333-325;19-21,323-321	8-8,334-334[SIL];18-18,324-324[SIL]	(((.(((((((((.(((((((&))))))).))))))))).)))	GAGUGGUAGAAGAUUUGAGUC&GAUUCAACUCUUCUAUUUUUC	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN33814_c0_g1_332_TPlot.pdf
TRINITY_DN33814_c0_g1:335	si_a775	TRINITY_DN33814_c0_g1	324	344	335	-27.20	-18.10	0.665441176470588	10	4-10,341-335;12-20,333-325	1-3,344-342[UP5];11-11,334-334[SIL];21-21,324-324[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	UGGUAGAAGAUUUGAGUCUGA&AUUGAUUCAACUCUUCUAUUU	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN33814_c0_g1_335_TPlot.pdf
TRINITY_DN33819_c0_g1:14	si_s476	TRINITY_DN33819_c0_g1	3	24	14	-28.40	-18.60	0.654929577464789	10	1-9,24-16;10-13,14-11	x-x,15-15[BULt];14-21,10-3[UP3]	........((((.(((((((((&)))))))))-))))........	AAGAUUAAAUAGAGAUCCGUUG&CAACGGAUC-CUAUAUUUAUUU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN33819_c0_g1_14_TPlot.pdf
TRINITY_DN33819_c0_g1:17	si_s474	TRINITY_DN33819_c0_g1	5	26	17	-31.80	-21.00	0.660377358490566	9	2-11,25-16;12-15,14-11	1-1,26-26[UP5];x-x,15-15[BULt];16-21,10-5[UP3]	......((((.((((((((((.&.))))))))))-))))......	GAUUAAAUAGAGAUCCGUUGGC&UCCAACGGAUC-CUAUAUUUAU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN33819_c0_g1_17_TPlot.pdf
TRINITY_DN3381_c0_g1:2409	si_s86	TRINITY_DN3381_c0_g1	2399	2418	2409	-32.90	-24.00	0.729483282674772	7.5	3-17,2416-2402;19-20,2401-2400	1-2,2418-2417[UP5];18-18,x-x[BULq];21-21,2399-2399[UP3]	.((-(((((((((((((((..&..))))))))))))))).)).	UGC-AAGAGGAGGAAGGGAUC&UUUCCUUUCUUCUUCUUCGCU	4	0.999996071852019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3381_c0_g1_2409_TPlot.pdf
TRINITY_DN3381_c0_g1:2411	si_s84	TRINITY_DN3381_c0_g1	2399	2420	2411	-32.30	-21.20	0.656346749226006	11	5-19,2416-2402;20-21,2400-2399	1-4,2420-2417[UP5];x-x,2401-2401[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	UGCAAGAGGAGGAAGGGAUCCU&UCUUUCCUUUCUUCUUCUU-CG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3381_c0_g1_2411_TPlot.pdf
TRINITY_DN3381_c0_g1:2413	si_s82	TRINITY_DN3381_c0_g1	2402	2422	2413	-28.90	-21.20	0.73356401384083	13	7-21,2416-2402	1-6,2422-2417[UP5]	(((((((((((((((......&......)))))))))))))))	AAGAGGAGGAAGGGAUCCUGG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999999994533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3381_c0_g1_2413_TPlot.pdf
TRINITY_DN3381_c0_g1:2415	si_s80	TRINITY_DN3381_c0_g1	2404	2424	2415	-28.20	-19.10	0.677304964539007	17	9-21,2416-2404	1-8,2424-2417[UP5]	(((((((((((((........&........)))))))))))))	GAGGAGGAAGGGAUCCUGGGG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3381_c0_g1_2415_TPlot.pdf
TRINITY_DN3381_c0_g1:2528	si_a788	TRINITY_DN3381_c0_g1	2515	2537	2528	-24.80	-16.20	0.653225806451613	7	1-4,2537-2534;6-13,2532-2525;14-21,2522-2515	5-5,2533-2533[SIL];x-x,2524-2523[BULt]	((((((((..((((((((.((((&)))).))))))))--))))))))	UUGGAGAAGCUGGAGAAAGAGAG&UUCUAUUUUUCUA--UUUUCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3381_c0_g1_2528_TPlot.pdf
TRINITY_DN3381_c0_g1:2764	si_a230	TRINITY_DN3381_c0_g1	2753	2773	2764	-26.90	-17.80	0.661710037174721	7	1-8,2773-2766;10-14,2764-2760;16-20,2758-2754	9-9,2765-2765[SIL];15-15,2759-2759[SIL];21-21,2753-2753[UP3]	.(((((.(((((.((((((((&)))))))).))))).))))).	CCGAAUCGAUUGAAGAAGCGU&AUGUUUCUAUAAUCAAUUCGA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN3381_c0_g1_2764_TPlot.pdf
TRINITY_DN3381_c0_g1:3064	si_a259	TRINITY_DN3381_c0_g1	3051	3073	3064	-39.20	-28.20	0.719387755102041	6.5	1-4,3073-3070;6-12,3068-3062;13-16,3060-3057;17-21,3055-3051	5-5,3069-3069[SIL];x-x,3061-3061[BULt];x-x,3056-3056[BULt]	(((((.((((.(((((((.((((&)))).)))))))-))))-)))))	GGGCGAUUUGACCCUCGAGACGA&UUGUAUCGAGGG-CAAA-CGCCU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN3381_c0_g1_3064_TPlot.pdf
TRINITY_DN3381_c0_g1:4183	si_s858	TRINITY_DN3381_c0_g1	4166	4191	4183	-43.30	-28.56	0.659584295612009	11	2-2,4190-4190;4-14,4189-4179;16-21,4171-4166	1-1,4191-4191[UP5];3-3,x-x[BULq];15-15,4178-4172[AILt]	((((((.......(((((((((((-(.&.).)))))))))))------.))))))	GACCGGAUCGACGAGGUCUGGGAG-CA&CGACUCCUAGACCU------ACCGGUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s858_TRINITY_DN3381_c0_g1_4183_TPlot.pdf
TRINITY_DN3381_c0_g1:42	si_a830	TRINITY_DN3381_c0_g1	30	51	42	-25.80	-17.30	0.670542635658915	6.5	1-7,51-45;10-15,42-37;17-21,34-30	8-9,44-43[SIL];16-16,36-35[AILt]	(((((..((((((..(((((((&)))))))..))))))-.)))))	GCUUCCGAUUUUUCCUCUUUCC&GGAAAGAAAAAAAAU-AGAAGU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a830_TRINITY_DN3381_c0_g1_42_TPlot.pdf
TRINITY_DN3381_c0_g1:704	si_s85	TRINITY_DN3381_c0_g1	693	713	704	-33.80	-23.80	0.70414201183432	6	2-6,712-708;8-20,706-694	1-1,713-713[UP5];7-7,707-707[SIL];21-21,693-693[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UCGGAGGAGAAGAACGGAAGA&CUUUCCUUUCUUCUUCUUCGC	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3381_c0_g1_704_TPlot.pdf
TRINITY_DN3381_c0_g1:705	si_s84	TRINITY_DN3381_c0_g1	694	714	705	-32.30	-23.80	0.736842105263158	7	3-7,712-708;9-21,706-694	1-2,714-713[UP5];8-8,707-707[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	CGGAGGAGAAGAACGGAAGAA&UCUUUCCUUUCUUCUUCUUCG	4	0.99998984753454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3381_c0_g1_705_TPlot.pdf
TRINITY_DN33820_c0_g1:847	si_s73	TRINITY_DN33820_c0_g1	826	856	847	-24.00	-15.70	0.654166666666667	13.5	1-15,856-842;16-21,831-826	x-x,841-832[BULt]	((((((..........(((((((((((((((&)))))))))))))))----------))))))	AAAGGAUUUUAUAAUGAAGAAGGAAAAUGGG&UCUAUUUUUUUUCUU----------UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN33820_c0_g1_847_TPlot.pdf
TRINITY_DN33820_c3_g1:406	si_a536	TRINITY_DN33820_c3_g1	392	415	406	-38.50	-26.40	0.685714285714286	11	3-11,413-405;12-20,401-393	1-2,415-414[UP5];x-x,404-402[BULt];21-21,392-392[UP3]	.(((((((((...(((((((((..&..)))))))))---))))))))).	GAGGUUGGACAGUCGAUCGCUCAG&GCGAGCGAUCG---GUUCAAUCUA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a536_TRINITY_DN33820_c3_g1_406_TPlot.pdf
TRINITY_DN33829_c0_g1:142	si_s72	TRINITY_DN33829_c0_g1	131	151	142	-24.10	-15.70	0.651452282157676	9.5	1-4,151-148;6-9,146-143;11-20,141-132	5-5,147-147[SIL];10-10,142-142[SIL];21-21,131-131[UP3]	.((((((((((.((((.((((&)))).)))).)))))))))).	UGGGAAAGAAGUAGAGCAGGA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN33829_c0_g1_142_TPlot.pdf
TRINITY_DN3382_c0_g1:485	si_a140	TRINITY_DN3382_c0_g1	473	494	485	-25.20	-16.58	0.657936507936508	10.5	1-5,494-490;9-10,486-485;11-21,483-473	6-8,489-487[SIL];x-x,484-484[BULt]	(((((((((((.((...(((((&)))))...))-)))))))))))	GAAGCAGCAGCAGAGACAUUAC&GUAAUUAAUC-GUUGUUGUUUU	3	0.999999985327344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN3382_c0_g1_485_TPlot.pdf
TRINITY_DN3382_c0_g1:603	si_a430	TRINITY_DN3382_c0_g1	592	611	603	-33.70	-22.20	0.658753709198813	7.5	2-8,610-604;10-19,603-594	1-1,611-611[UP5];9-9,x-x[BULq];20-21,593-592[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	UUUGUCUGACGG-UCCUGUAG&AUAUAGGAUCCGUUGGAUAUG	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN3382_c0_g1_603_TPlot.pdf
TRINITY_DN3382_c0_g1:604	si_a429	TRINITY_DN3382_c0_g1	593	612	604	-32.00	-22.20	0.69375	8.5	3-9,610-604;11-20,603-594	1-2,612-611[UP5];10-10,x-x[BULq];21-21,593-593[UP3]	.((((((((((-(((((((..&..))))))).)))))))))).	UUGUCUGACGG-UCCUGUAGA&AAUAUAGGAUCCGUUGGAUAU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN3382_c0_g1_604_TPlot.pdf
TRINITY_DN3382_c0_g1:872	si_a872	TRINITY_DN3382_c0_g1	860	881	872	-27.00	-18.30	0.677777777777778	6.5	1-19,881-863;20-20,861-861	x-x,862-862[BULt];21-21,860-860[UP3]	.(.(((((((((((((((((((&)))))))))))))))))))-).	GGUAUUGUAGCUGGAUUUUUAG&UUAAAGAUUUAGUUGCAAU-CA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN3382_c0_g1_872_TPlot.pdf
TRINITY_DN3382_c0_g1:876	si_a868	TRINITY_DN3382_c0_g1	865	885	876	-24.80	-19.30	0.778225806451613	7	3-21,883-865	1-2,885-884[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UGUAGCUGGAUUUUUAGUACA&AUUAUUAAAGAUUUAGUUGCA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN3382_c0_g1_876_TPlot.pdf
TRINITY_DN33835_c0_g1:143	si_a787	TRINITY_DN33835_c0_g1	132	152	143	-26.30	-18.70	0.711026615969582	6	1-13,152-140;16-19,137-134	14-15,139-138[SIL];20-21,133-132[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	CAGAAAUGAGGAAAAUGGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999997290929464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN33835_c0_g1_143_TPlot.pdf
TRINITY_DN33835_c0_g1:146	si_a784	TRINITY_DN33835_c0_g1	134	155	146	-24.70	-20.90	0.846153846153846	4	2-16,154-140;17-21,138-134	1-1,155-155[UP5];x-x,139-139[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GAAAUGAGGAAAAUGGAAGAGG&ACUCUUCUAUUUUUCU-AUUUU	1	0.0105390927748612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN33835_c0_g1_146_TPlot.pdf
TRINITY_DN33835_c0_g1:147	si_a783	TRINITY_DN33835_c0_g1	135	156	147	-24.70	-19.80	0.801619433198381	5.5	3-17,154-140;18-21,138-135	1-2,156-155[UP5];x-x,139-139[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	AAAUGAGGAAAAUGGAAGAGGA&AACUCUUCUAUUUUUCU-AUUU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN33835_c0_g1_147_TPlot.pdf
TRINITY_DN3385_c0_g1:785	si_s111	TRINITY_DN3385_c0_g1	774	794	785	-24.80	-18.70	0.754032258064516	7	4-19,791-776	1-3,794-792[UP5];20-21,775-774[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGUAUUUUUCUAUUUUCCUGC&AUUGGAAAAUAGAAAAAUAGA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN3385_c0_g1_785_TPlot.pdf
TRINITY_DN33861_c0_g1:342	si_a486	TRINITY_DN33861_c0_g1	331	351	342	-24.90	-16.30	0.654618473895582	13.5	7-21,345-331	1-6,351-346[UP5]	(((((((((((((((......&......)))))))))))))))	GAGACGGCAUAUUUUUGGAAA&UUAUAUAGAAUAUGUCGUUUU	2	0.996018473863355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN33861_c0_g1_342_TPlot.pdf
TRINITY_DN3387_c0_g1:1107	si_a817	TRINITY_DN3387_c0_g1	1096	1116	1107	-30.90	-20.20	0.653721682847896	6.5	1-9,1116-1108;11-17,1106-1100	10-10,1107-1107[SIL];18-21,1099-1096[UP3]	....(((((((.(((((((((&))))))))).)))))))....	CACAUUCUUUUGUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN3387_c0_g1_1107_TPlot.pdf
TRINITY_DN3387_c0_g1:1207	si_s92	TRINITY_DN3387_c0_g1	1196	1216	1207	-34.90	-26.50	0.759312320916905	6	2-18,1215-1199	1-1,1216-1216[UP5];19-21,1198-1196[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GUAUGGAGCGGAGAAGAAGAU&UUCUUCUUCUUCGCUUCGGAU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3387_c0_g1_1207_TPlot.pdf
TRINITY_DN3387_c0_g1:1210	si_s89	TRINITY_DN3387_c0_g1	1199	1219	1210	-35.30	-26.50	0.75070821529745	9	5-20,1215-1200	1-4,1219-1216[UP5];21-21,1199-1199[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGAGCGGAGAAGAAGAUUUC&CCUUUCUUCUUCUUCGCUUCG	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3387_c0_g1_1210_TPlot.pdf
TRINITY_DN3388_c0_g2:1789	si_s3	TRINITY_DN3388_c0_g2	1778	1798	1789	-21.20	-15.30	0.721698113207547	7	1-9,1798-1790;11-21,1788-1778	10-10,1789-1789[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GGUGAUGGUAAAUGGUGUAAA&UUUAUAUUACUUAUUAUUACU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN3388_c0_g2_1789_TPlot.pdf
TRINITY_DN3388_c0_g2:2312	si_a395	TRINITY_DN3388_c0_g2	2301	2321	2312	-24.70	-16.16	0.654251012145749	11	2-3,2320-2319;8-21,2314-2301	1-1,2321-2321[UP5];4-7,2318-2315[SIL]	((((((((((((((....((.&.))....))))))))))))))	ACAAGGCGGUUCUAGACGCUG&AAGAAUAUAGAAUUGUUUUGU	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN3388_c0_g2_2312_TPlot.pdf
TRINITY_DN3388_c0_g2:3485	si_a126	TRINITY_DN3388_c0_g2	3474	3494	3485	-24.70	-16.20	0.65587044534413	12	4-18,3491-3477	1-3,3494-3492[UP5];19-21,3476-3474[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAUUUGCUGUUGUUGUGAUGG&GUUUUAUAGCAAUAGUAAUUA	2	0.996211839284778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN3388_c0_g2_3485_TPlot.pdf
TRINITY_DN3389_c0_g1:1180	si_a718	TRINITY_DN3389_c0_g1	1169	1187	1180	-32.60	-21.40	0.656441717791411	11.5	4-8,1184-1180;11-21,1179-1169	1-3,1187-1185[UP5];9-10,x-x[BULq]	(((((((((((--(((((...&...)))))..)))))))))))	GUGCCCGAGUG--GAUUGAGU&AAAUAAUCGUUACUCGGGCAU	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN3389_c0_g1_1180_TPlot.pdf
TRINITY_DN3389_c0_g1:18	si_a548	TRINITY_DN3389_c0_g1	6	27	18	-27.20	-20.90	0.768382352941176	4.5	2-9,26-19;11-15,17-13;16-21,11-6	1-1,27-27[UP5];10-10,18-18[SIL];x-x,12-12[BULt]	((((((.(((((.((((((((.&.)))))))).)))))-))))))	GAGAUGAAAGAAUUAGAUUGAU&UUCAAUCUAUUUCUU-UAUCUC	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN3389_c0_g1_18_TPlot.pdf
TRINITY_DN3389_c0_g1:5696	si_a99	TRINITY_DN3389_c0_g1	5685	5705	5696	-28.20	-18.90	0.670212765957447	10	3-16,5703-5690	1-2,5705-5704[UP5];17-21,5689-5685[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAUCAUUAUCUUUGUUGCCGA&AAGGUAACGAAGAUAAAAUAC	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a99_TRINITY_DN3389_c0_g1_5696_TPlot.pdf
TRINITY_DN3389_c0_g1:6033	si_a594	TRINITY_DN3389_c0_g1	6022	6042	6033	-32.30	-21.90	0.678018575851393	10	4-19,6039-6024	1-3,6042-6040[UP5];20-21,6023-6022[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCUGCGGAGAUUUUGUCUCGA&GAAGGACAGAAUUUUCGCAAU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN3389_c0_g1_6033_TPlot.pdf
TRINITY_DN3389_c0_g1:6034	si_a593	TRINITY_DN3389_c0_g1	6023	6043	6034	-32.90	-21.90	0.665653495440729	11	5-20,6039-6024	1-4,6043-6040[UP5];21-21,6023-6023[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUGCGGAGAUUUUGUCUCGAG&AGAAGGACAGAAUUUUCGCAA	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN3389_c0_g1_6034_TPlot.pdf
TRINITY_DN3389_c0_g1:6035	si_a592	TRINITY_DN3389_c0_g1	6024	6044	6035	-32.80	-21.60	0.658536585365854	12	6-21,6039-6024	1-5,6044-6040[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGCGGAGAUUUUGUCUCGAGG&AAGAAGGACAGAAUUUUCGCA	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN3389_c0_g1_6035_TPlot.pdf
TRINITY_DN3389_c0_g1:6044	si_s536	TRINITY_DN3389_c0_g1	6031	6053	6044	-27.70	-18.10	0.653429602888087	8	1-11,6053-6043;12-14,6041-6039;16-21,6036-6031	x-x,6042-6042[BULt];15-15,6038-6037[AILt]	((((((..(((.(((((((((((&)))))))))))-)))-.))))))	AUUUUGUCUCGAGGUCGGAAGUG&CAUUUUUGAUC-CGA-UCAAAAU	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN3389_c0_g1_6044_TPlot.pdf
TRINITY_DN3389_c0_g1:6123	si_a805	TRINITY_DN3389_c0_g1	6111	6133	6123	-36.30	-24.10	0.663911845730028	10	1-2,6133-6132;5-13,6128-6120;15-19,6117-6113	3-4,6131-6129[AILt];14-14,6119-6118[AILt];20-21,6112-6111[UP3]	..(((((..(((((((((...((&))-..)))))))))-.)))))..	CACUUCUGACGCUUCGGAGGAGG&CC-AAUCCGAAGCG-AAGAAGAA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a805_TRINITY_DN3389_c0_g1_6123_TPlot.pdf
TRINITY_DN3389_c0_g1:6124	si_a804	TRINITY_DN3389_c0_g1	6112	6134	6124	-37.20	-25.50	0.685483870967742	9	1-3,6134-6132;6-14,6128-6120;16-20,6117-6113	4-5,6131-6129[AILt];15-15,6119-6118[AILt];21-21,6112-6112[UP3]	.(((((..(((((((((...(((&)))-..)))))))))-.))))).	ACUUCUGACGCUUCGGAGGAGGA&UCC-AAUCCGAAGCG-AAGAAGA	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN3389_c0_g1_6124_TPlot.pdf
TRINITY_DN3389_c0_g1:6125	si_a803	TRINITY_DN3389_c0_g1	6113	6135	6125	-36.30	-25.60	0.705234159779614	9	2-4,6134-6132;7-15,6128-6120;17-21,6117-6113	1-1,6135-6135[UP5];5-6,6131-6129[AILt];16-16,6119-6118[AILt]	(((((..(((((((((...(((.&.)))-..)))))))))-.)))))	CUUCUGACGCUUCGGAGGAGGAC&UUCC-AAUCCGAAGCG-AAGAAG	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a803_TRINITY_DN3389_c0_g1_6125_TPlot.pdf
TRINITY_DN3389_c0_g1:7111	si_s99	TRINITY_DN3389_c0_g1	7100	7121	7111	-34.60	-22.60	0.653179190751445	9.5	2-5,7120-7117;6-7,7115-7114;9-18,7112-7103	1-1,7121-7121[UP5];x-x,7116-7116[BULt];8-8,7113-7113[SIL];19-21,7102-7100[UP3]	...((((((((((.((.((((.&.))))-)).))))))))))...	AGCUCCGAUCCGACGCUGGAGC&UCUUC-GCUUCGGAUUGGAAAA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN3389_c0_g1_7111_TPlot.pdf
TRINITY_DN3389_c0_g1:7554	si_a45	TRINITY_DN3389_c0_g1	7543	7562	7554	-41.60	-27.70	0.665865384615385	7	1-4,7562-7559;6-19,7558-7545	5-5,x-x[BULq];20-21,7544-7543[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	AUUUGACUUCUGGACC-GCCG&CGGUAGGUCUAGGAGUCGACU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a45_TRINITY_DN3389_c0_g1_7554_TPlot.pdf
TRINITY_DN3389_c0_g1:7557	si_a42	TRINITY_DN3389_c0_g1	7546	7569	7557	-43.30	-29.80	0.688221709006928	10.5	1-2,7569-7568;3-7,7566-7562;9-21,7558-7546	x-x,7567-7567[BULt];8-8,7561-7559[AILt]	(((((((((((((...(((((.((&))-)))))--.)))))))))))))	UGACUUCUGGACCGCCGCCGGCUC&GA-CCGGU--AGGUCUAGGAGUCG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a42_TRINITY_DN3389_c0_g1_7557_TPlot.pdf
TRINITY_DN338_c0_g1:262	si_a786	TRINITY_DN338_c0_g1	251	274	262	-26.60	-17.44	0.655639097744361	11	1-9,274-266;11-16,261-256;19-21,253-251	10-10,265-262[AILt];17-18,255-254[SIL]	(((..((((((....(((((((((&)))))))))---.))))))..)))	GGAUUAUAGAACUAUAAUAGGAGA&UCUUCUAUU---UUUCUAUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN338_c0_g1_262_TPlot.pdf
TRINITY_DN338_c0_g1:3546	si_a411	TRINITY_DN338_c0_g1	3535	3554	3546	-17.90	-12.70	0.709497206703911	7	1-6,3554-3549;8-20,3548-3536	7-7,x-x[BULq];21-21,3535-3535[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	UUUUAUUUAAGUGU-AACGGA&UUUGUUUAUAUUUAAAUAAAU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN338_c0_g1_3546_TPlot.pdf
TRINITY_DN338_c0_g1:3547	si_a410	TRINITY_DN338_c0_g1	3536	3555	3547	-17.80	-12.80	0.719101123595506	7	2-7,3554-3549;9-21,3548-3536	1-1,3555-3555[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	UUUAUUUAAGUGU-AACGGAU&UUUUGUUUAUAUUUAAAUAAA	3	0.999974771577817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN338_c0_g1_3547_TPlot.pdf
TRINITY_DN338_c0_g2:474	si_s818	TRINITY_DN338_c0_g2	463	483	474	-23.70	-17.18	0.724894514767933	7	1-10,483-474;14-21,470-463	11-13,473-471[SIL]	((((((((...((((((((((&))))))))))...))))))))	UUUUUCAUCUCUAGGAAGAGG&CCUUUUCUUAAUAAUGAAAAA	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN338_c0_g2_474_TPlot.pdf
TRINITY_DN338_c0_g2:475	si_s817	TRINITY_DN338_c0_g2	464	484	475	-24.50	-16.38	0.668571428571428	7	2-11,483-474;15-21,470-464	1-1,484-484[UP5];12-14,473-471[SIL]	(((((((...((((((((((.&.))))))))))...)))))))	UUUUCAUCUCUAGGAAGAGGA&ACCUUUUCUUAAUAAUGAAAA	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN338_c0_g2_475_TPlot.pdf
TRINITY_DN338_c0_g2:485	si_a497	TRINITY_DN338_c0_g2	474	494	485	-32.00	-22.80	0.7125	8	2-5,493-490;7-12,488-483;14-20,481-475	1-1,494-494[UP5];6-6,489-489[SIL];13-13,482-482[SIL];21-21,474-474[UP3]	.(((((((.((((((.((((.&.)))).)))))).))))))).	UAGGAAGAGGAAGAGGGAUAG&AUGUCGUUUUUCGUCUUCCUU	2	0.999071824285151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN338_c0_g2_485_TPlot.pdf
TRINITY_DN338_c0_g2:486	si_a496	TRINITY_DN338_c0_g2	475	495	486	-32.40	-22.80	0.703703703703704	9	3-6,493-490;8-13,488-483;15-21,481-475	1-2,495-494[UP5];7-7,489-489[SIL];14-14,482-482[SIL]	(((((((.((((((.((((..&..)))).)))))).)))))))	AGGAAGAGGAAGAGGGAUAGG&UAUGUCGUUUUUCGUCUUCCU	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN338_c0_g2_486_TPlot.pdf
TRINITY_DN338_c0_g2:487	si_s72	TRINITY_DN338_c0_g2	474	496	487	-24.10	-18.60	0.771784232365145	8.5	1-15,496-482;16-20,479-475	x-x,481-480[BULt];21-21,474-474[UP3]	.(((((..(((((((((((((((&)))))))))))))))--))))).	UAGGAAGAGGAAGAGGGAUAGGA&UUCUAUUUUUUUUCU--UUCCUU	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN338_c0_g2_487_TPlot.pdf
TRINITY_DN338_c0_g2:488	si_s71	TRINITY_DN338_c0_g2	475	497	488	-25.70	-18.80	0.731517509727627	8.5	2-16,496-482;17-21,479-475	1-1,497-497[UP5];x-x,481-480[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	AGGAAGAGGAAGAGGGAUAGGAA&CUUCUAUUUUUUUUCU--UUCCU	3	0.9999999945586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN338_c0_g2_488_TPlot.pdf
TRINITY_DN338_c0_g2:489	si_s85	TRINITY_DN338_c0_g2	478	499	489	-33.80	-25.60	0.757396449704142	7.5	1-7,499-493;8-19,491-480	x-x,492-492[BULt];20-21,479-478[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AAGAGGAAGAGGGAUAGGAAGG&CUUUCCU-UUCUUCUUCUUCGC	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN338_c0_g2_489_TPlot.pdf
TRINITY_DN338_c0_g2:490	si_s84	TRINITY_DN338_c0_g2	479	500	490	-32.30	-25.80	0.798761609907121	7	1-8,500-493;9-20,491-480	x-x,492-492[BULt];21-21,479-479[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	AGAGGAAGAGGGAUAGGAAGGG&UCUUUCCU-UUCUUCUUCUUCG	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN338_c0_g2_490_TPlot.pdf
TRINITY_DN338_c0_g2:491	si_s83	TRINITY_DN338_c0_g2	480	501	491	-30.90	-25.50	0.825242718446602	7	2-9,500-493;10-21,491-480	1-1,501-501[UP5];x-x,492-492[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	GAGGAAGAGGGAUAGGAAGGGC&UUCUUUCCU-UUCUUCUUCUUC	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN338_c0_g2_491_TPlot.pdf
TRINITY_DN338_c0_g2:495	si_s80	TRINITY_DN338_c0_g2	483	504	495	-28.20	-20.40	0.723404255319149	12	5-12,500-493;13-21,491-483	1-4,504-501[UP5];x-x,492-492[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	GAAGAGGGAUAGGAAGGGCCAG&UUUUUCUUUCCU-UUCUUCUUC	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN338_c0_g2_495_TPlot.pdf
TRINITY_DN338_c2_g1:533	si_a319	TRINITY_DN338_c2_g1	522	541	533	-22.40	-15.10	0.674107142857143	8	1-9,541-533;12-21,531-522	10-11,532-532[AILq]	((((((((((.-(((((((((&)))))))))..))))))))))	AGUGGAAAGAG-AUGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN338_c2_g1_533_TPlot.pdf
TRINITY_DN338_c2_g1:535	si_s70	TRINITY_DN338_c2_g1	525	544	535	-25.80	-21.20	0.821705426356589	7.5	1-10,544-535;13-21,533-525	11-12,534-534[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	GGAAAGAGAU-GGAUGGAAGU&ACUUCUAUUUUUUUUCUUUCC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN338_c2_g1_535_TPlot.pdf
TRINITY_DN338_c2_g1:537	si_s68	TRINITY_DN338_c2_g1	527	546	537	-23.10	-15.10	0.653679653679654	8.5	3-12,544-535;15-21,533-527	1-2,546-545[UP5];13-14,534-534[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	AAAGAGAU-GGAUGGAAGUCA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN338_c2_g1_537_TPlot.pdf
TRINITY_DN338_c6_g1:5519	si_a312	TRINITY_DN338_c6_g1	5507	5528	5519	-31.20	-21.10	0.676282051282051	6.5	2-4,5527-5525;6-16,5523-5513;17-21,5511-5507	1-1,5528-5528[UP5];5-5,5524-5524[SIL];x-x,5512-5512[BULt]	(((((.(((((((((((.(((.&.))).)))))))))))-)))))	AAAUCGGUGGAUAGGUCGAAGA&GCUUGGAUUUAUCCAU-GAUUU	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN338_c6_g1_5519_TPlot.pdf
TRINITY_DN3391_c0_g1:7039	si_s2	TRINITY_DN3391_c0_g1	7027	7049	7039	-20.50	-14.10	0.68780487804878	4.5	1-9,7049-7041;10-15,7039-7034;16-21,7032-7027	x-x,7040-7040[BULt];x-x,7033-7033[BULt]	((((((.((((((.(((((((((&)))))))))-))))))-))))))	GUAAUAGGUAGGUAAAUAUAAAA&UUUUAUAUU-ACUUAU-UAUUAC	2	0.982920744291004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN3391_c0_g1_7039_TPlot.pdf
TRINITY_DN3393_c0_g1:1878	si_a358	TRINITY_DN3393_c0_g1	1867	1887	1878	-29.10	-19.00	0.652920962199313	10.5	3-6,1885-1882;8-20,1880-1868	1-2,1887-1886[UP5];7-7,1881-1881[SIL];21-21,1867-1867[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	GGAUUCGAUCGGAGAAGGAGU&AAUUCUAUUUUGAUCGGAUCA	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN3393_c0_g1_1878_TPlot.pdf
TRINITY_DN3393_c0_g1:1886	si_a321	TRINITY_DN3393_c0_g1	1877	1895	1886	-26.70	-18.80	0.704119850187266	9	3-16,1893-1880;19-21,1879-1877	1-2,1895-1894[UP5];17-18,x-x[BULq]	(((--((((((((((((((..&..))))))))))))))..)))	GGA--GAAGGAGUCGUGGAGG&UAUCCAUGAUUUUUUUAUUCC	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3393_c0_g1_1886_TPlot.pdf
TRINITY_DN3394_c0_g1:1538	si_s7	TRINITY_DN3394_c0_g1	1527	1549	1538	-21.70	-15.86	0.730875576036866	13.5	1-8,1549-1542;12-21,1536-1527	9-11,1541-1537[AILt]	((((((((((.....((((((((&))))))))--...))))))))))	GUGUAGUAGUUGGAGGAGUAGUA&UAUUACUU--AUUAUUACUAUAU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN3394_c0_g1_1538_TPlot.pdf
TRINITY_DN3394_c0_g1:214	si_a172	TRINITY_DN3394_c0_g1	203	224	214	-31.90	-21.40	0.670846394984326	9	2-7,223-218;8-16,216-208	1-1,224-224[UP5];x-x,217-217[BULt];17-21,207-203[UP3]	.....(((((((((.((((((.&.))))))-))))))))).....	GAGUGAUCUAGAUGCGGUGAAG&AUUCACC-CGUCUAGAUAAUAU	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN3394_c0_g1_214_TPlot.pdf
TRINITY_DN3394_c0_g1:216	si_a170	TRINITY_DN3394_c0_g1	205	227	216	-33.40	-22.90	0.68562874251497	9	1-5,227-223;6-9,221-218;10-18,216-208	x-x,222-222[BULt];x-x,217-217[BULt];19-21,207-205[UP3]	...(((((((((.((((.(((((&)))))-))))-)))))))))...	GUGAUCUAGAUGCGGUGAAGUAG&CUAUU-CACC-CGUCUAGAUAAU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN3394_c0_g1_216_TPlot.pdf
TRINITY_DN3394_c0_g1:219	si_a168	TRINITY_DN3394_c0_g1	207	229	219	-34.40	-24.30	0.706395348837209	7.5	2-7,228-223;8-11,221-218;12-20,216-208	1-1,229-229[UP5];x-x,222-222[BULt];x-x,217-217[BULt];21-21,207-207[UP3]	.(((((((((.((((.((((((.&.))))))-))))-))))))))).	GAUCUAGAUGCGGUGAAGUAGAC&AUCUAUU-CACC-CGUCUAGAUA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN3394_c0_g1_219_TPlot.pdf
TRINITY_DN3394_c0_g1:220	si_a167	TRINITY_DN3394_c0_g1	208	230	220	-34.00	-23.90	0.702941176470588	8.5	3-8,228-223;9-12,221-218;13-21,216-208	1-2,230-229[UP5];x-x,222-222[BULt];x-x,217-217[BULt]	(((((((((.((((.((((((..&..))))))-))))-)))))))))	AUCUAGAUGCGGUGAAGUAGACU&AAUCUAUU-CACC-CGUCUAGAU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a167_TRINITY_DN3394_c0_g1_220_TPlot.pdf
TRINITY_DN3394_c0_g1:258	si_s729	TRINITY_DN3394_c0_g1	247	267	258	-32.10	-21.60	0.672897196261682	9	1-8,267-260;10-19,258-249	9-9,259-259[SIL];20-21,248-247[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	ACUUUACCCGUUAGGGUAGUG&UAUUAUCUAGACGGGUGAAUA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN3394_c0_g1_258_TPlot.pdf
TRINITY_DN3394_c0_g1:2898	si_a411	TRINITY_DN3394_c0_g1	2887	2907	2898	-17.90	-12.00	0.670391061452514	7	1-16,2907-2892	17-21,2891-2887[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUGCUUUAAAUGUAAAUAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.999994698078526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3394_c0_g1_2898_TPlot.pdf
TRINITY_DN3394_c0_g1:2899	si_a410	TRINITY_DN3394_c0_g1	2888	2908	2899	-17.80	-12.10	0.679775280898876	7	2-17,2907-2892	1-1,2908-2908[UP5];18-21,2891-2888[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUGCUUUAAAUGUAAAUAAAC&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999919273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3394_c0_g1_2899_TPlot.pdf
TRINITY_DN3394_c0_g1:856	si_a316	TRINITY_DN3394_c0_g1	846	866	856	-26.30	-18.40	0.699619771863118	7.5	1-5,866-862;6-10,860-856;12-20,855-847	x-x,861-861[BULt];11-11,x-x[BULq];21-21,846-846[UP3]	.(((((((((-(((((.(((((&)))))-))))).))))))))).	UGGAGAAUCA-GGAUGCAAUCC&GGAUU-UAUCCAUGAUUUUUUU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN3394_c0_g1_856_TPlot.pdf
TRINITY_DN33952_c0_g1:127	si_a880	TRINITY_DN33952_c0_g1	117	136	127	-27.80	-20.00	0.719424460431655	3.5	1-14,136-123;17-17,120-120;19-21,119-117	15-16,122-121[SIL];18-18,x-x[BULq]	(((-(..((((((((((((((&))))))))))))))..).)))	UGC-AGUUUGAUUGCAACUAA&UUAGUUGCAAUCAAUAUAGUA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN33952_c0_g1_127_TPlot.pdf
TRINITY_DN33952_c0_g1:134	si_a873	TRINITY_DN33952_c0_g1	123	143	134	-27.00	-18.80	0.696296296296296	13	8-21,136-123	1-7,143-137[UP5]	((((((((((((((.......&.......))))))))))))))	UUGAUUGCAACUAAUUGAGAC&UAAAGAUUUAGUUGCAAUCAA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN33952_c0_g1_134_TPlot.pdf
TRINITY_DN3395_c0_g1:1298	si_a139	TRINITY_DN3395_c0_g1	1287	1307	1298	-25.90	-17.50	0.675675675675676	6	2-4,1306-1304;6-13,1302-1295;15-21,1293-1287	1-1,1307-1307[UP5];5-5,1303-1303[SIL];14-14,1294-1294[SIL]	(((((((.((((((((.(((.&.))).)))))))).)))))))	AAACGGCCACGAUUAAGUGCA&AGUAAUUAAUCGUUGUUGUUU	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN3395_c0_g1_1298_TPlot.pdf
TRINITY_DN3395_c0_g1:1719	si_a416	TRINITY_DN3395_c0_g1	1708	1728	1719	-20.50	-14.30	0.697560975609756	4.5	1-3,1728-1726;5-7,1724-1722;9-21,1720-1708	4-4,1725-1725[SIL];8-8,1721-1721[SIL]	(((((((((((((.(((.(((&))).))).)))))))))))))	CCUAUGUUUAUUUUAAUUUAA&UUAUAUUUAAAUAAAUAUAGG	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN3395_c0_g1_1719_TPlot.pdf
TRINITY_DN3396_c0_g1:3743	si_s39	TRINITY_DN3396_c0_g1	3732	3752	3743	-22.30	-15.00	0.672645739910314	13.5	8-21,3745-3732	1-7,3752-3746[UP5]	((((((((((((((.......&.......))))))))))))))	GAAUCCAAUUAUUAUCCUCAA&AAAUCUUUAAUAAUUGGAUUU	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN3396_c0_g1_3743_TPlot.pdf
TRINITY_DN33971_c0_g1:1889	si_a323	TRINITY_DN33971_c0_g1	1878	1898	1889	-26.80	-19.80	0.738805970149254	6	1-8,1898-1891;10-19,1889-1880	9-9,1890-1890[SIL];20-21,1879-1878[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AUGGAAUAAAAAUAUUGUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN33971_c0_g1_1889_TPlot.pdf
TRINITY_DN33971_c0_g1:1890	si_a322	TRINITY_DN33971_c0_g1	1879	1899	1890	-27.00	-19.80	0.733333333333333	6	2-9,1898-1891;11-20,1889-1880	1-1,1899-1899[UP5];10-10,1890-1890[SIL];21-21,1879-1879[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UGGAAUAAAAAUAUUGUGGAA&AUCCAUGAUUUUUUUAUUCCU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN33971_c0_g1_1890_TPlot.pdf
TRINITY_DN3397_c0_g1:1067	si_a69	TRINITY_DN3397_c0_g1	1057	1076	1067	-24.00	-15.82	0.659166666666667	6.5	1-14,1076-1063;19-20,1059-1058	15-18,1062-1060[AILq];21-21,1057-1057[UP3]	.((...-((((((((((((((&))))))))))))))....)).	UUGUGU-GCAAUUUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999999201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3397_c0_g1_1067_TPlot.pdf
TRINITY_DN3397_c0_g1:1126	si_a476	TRINITY_DN3397_c0_g1	1115	1135	1126	-22.90	-16.50	0.720524017467249	6.5	1-12,1135-1124;14-18,1122-1118	13-13,1123-1123[SIL];19-21,1117-1115[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UAACUAUGCAACAGUAAUUGC&GUAAUUAUUGUUAUAUAGAAU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN3397_c0_g1_1126_TPlot.pdf
TRINITY_DN3397_c0_g1:1127	si_a475	TRINITY_DN3397_c0_g1	1116	1136	1127	-23.50	-16.70	0.71063829787234	6.5	2-13,1135-1124;15-19,1122-1118	1-1,1136-1136[UP5];14-14,1123-1123[SIL];20-21,1117-1116[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AACUAUGCAACAGUAAUUGCU&UGUAAUUAUUGUUAUAUAGAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN3397_c0_g1_1127_TPlot.pdf
TRINITY_DN3397_c0_g1:1128	si_a474	TRINITY_DN3397_c0_g1	1117	1137	1128	-23.60	-16.70	0.707627118644068	7.5	3-14,1135-1124;16-20,1122-1118	1-2,1137-1136[UP5];15-15,1123-1123[SIL];21-21,1117-1117[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	ACUAUGCAACAGUAAUUGCUC&AUGUAAUUAUUGUUAUAUAGA	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN3397_c0_g1_1128_TPlot.pdf
TRINITY_DN3397_c0_g1:1129	si_a473	TRINITY_DN3397_c0_g1	1118	1138	1129	-23.00	-16.70	0.726086956521739	8.5	4-15,1135-1124;17-21,1122-1118	1-3,1138-1136[UP5];16-16,1123-1123[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	CUAUGCAACAGUAAUUGCUCA&UAUGUAAUUAUUGUUAUAUAG	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN3397_c0_g1_1129_TPlot.pdf
TRINITY_DN3397_c0_g1:1564	si_s67	TRINITY_DN3397_c0_g1	1552	1579	1564	-25.60	-17.30	0.67578125	17	1-6,1579-1574;7-10,1567-1564;11-21,1562-1552	x-x,1573-1568[BULt];x-x,1563-1563[BULt]	(((((((((((.((((......((((((&))))))------))))-)))))))))))	AAGAAAGAGGAUUAGAGUGUUAGGUUGC&GCAACU------UCUA-UUUUUUUUCUU	3	0.999999998965374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3397_c0_g1_1564_TPlot.pdf
TRINITY_DN3397_c0_g1:724	si_a407	TRINITY_DN3397_c0_g1	713	733	724	-19.80	-13.60	0.686868686868687	9	1-9,733-725;11-17,723-717	10-10,724-724[SIL];18-21,716-713[UP3]	....(((((((.(((((((((&))))))))).)))))))....	GAAGGAAUGUACACAGGACAA&UUGUUUUGUUUAUAUUUAAAU	3	0.99999999999862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3397_c0_g1_724_TPlot.pdf
TRINITY_DN3397_c0_g1:725	si_a406	TRINITY_DN3397_c0_g1	714	734	725	-19.80	-14.60	0.737373737373737	8	1-10,734-725;12-18,723-717	11-11,724-724[SIL];19-21,716-714[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AAGGAAUGUACACAGGACAAU&AUUGUUUUGUUUAUAUUUAAA	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3397_c0_g1_725_TPlot.pdf
TRINITY_DN3397_c0_g1:726	si_a405	TRINITY_DN3397_c0_g1	715	735	726	-19.80	-15.50	0.782828282828283	7	1-11,735-725;13-19,723-717	12-12,724-724[SIL];20-21,716-715[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AGGAAUGUACACAGGACAAUU&AAUUGUUUUGUUUAUAUUUAA	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3397_c0_g1_726_TPlot.pdf
TRINITY_DN3397_c0_g1:727	si_a404	TRINITY_DN3397_c0_g1	716	736	727	-21.70	-16.80	0.774193548387097	5.5	1-12,736-725;14-20,723-717	13-13,724-724[SIL];21-21,716-716[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GGAAUGUACACAGGACAAUUU&GAAUUGUUUUGUUUAUAUUUA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3397_c0_g1_727_TPlot.pdf
TRINITY_DN3397_c0_g1:728	si_a403	TRINITY_DN3397_c0_g1	717	737	728	-22.00	-17.00	0.772727272727273	5	1-13,737-725;15-21,723-717	14-14,724-724[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAAUGUACACAGGACAAUUUU&AGAAUUGUUUUGUUUAUAUUU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3397_c0_g1_728_TPlot.pdf
TRINITY_DN3397_c0_g1:729	si_a402	TRINITY_DN3397_c0_g1	718	738	729	-22.40	-15.70	0.700892857142857	5.5	2-14,737-725;16-21,723-718	1-1,738-738[UP5];15-15,724-724[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAUGUACACAGGACAAUUUUU&UAGAAUUGUUUUGUUUAUAUU	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN3397_c0_g1_729_TPlot.pdf
TRINITY_DN3397_c0_g1:730	si_a401	TRINITY_DN3397_c0_g1	719	739	730	-22.60	-14.80	0.654867256637168	7.5	3-15,737-725;17-21,723-719	1-2,739-738[UP5];16-16,724-724[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AUGUACACAGGACAAUUUUUA&AUAGAAUUGUUUUGUUUAUAU	2	0.999999975182863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN3397_c0_g1_730_TPlot.pdf
TRINITY_DN33983_c0_g2:344	si_a767	TRINITY_DN33983_c0_g2	333	353	344	-30.10	-20.40	0.677740863787375	4.5	1-18,353-336	19-21,335-333[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUAUUGAAUCAAUUAAAAACU&GGUUUUUGAUUGAUUCAACUC	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN33983_c0_g2_344_TPlot.pdf
TRINITY_DN33986_c0_g1:1136	si_a637	TRINITY_DN33986_c0_g1	1125	1145	1136	-25.80	-16.80	0.651162790697674	10	1-5,1145-1141;8-11,1138-1135;13-19,1133-1127	6-7,1140-1139[SIL];12-12,1134-1134[SIL];20-21,1126-1125[UP3]	..(((((((.((((..(((((&)))))..)))).)))))))..	AGGUUGCUCUAAAGCUUCGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.999999999997737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN33986_c0_g1_1136_TPlot.pdf
TRINITY_DN33986_c0_g1:1137	si_a636	TRINITY_DN33986_c0_g1	1126	1146	1137	-26.30	-17.80	0.67680608365019	8	1-6,1146-1141;9-12,1138-1135;14-20,1133-1127	7-8,1140-1139[SIL];13-13,1134-1134[SIL];21-21,1126-1126[UP3]	.(((((((.((((..((((((&))))))..)))).))))))).	GGUUGCUCUAAAGCUUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.99999948044527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN33986_c0_g1_1137_TPlot.pdf
TRINITY_DN33986_c0_g1:1161	si_s802	TRINITY_DN33986_c0_g1	1150	1170	1161	-26.40	-18.30	0.693181818181818	17	9-21,1162-1150	1-8,1170-1163[UP5]	(((((((((((((........&........)))))))))))))	GAAGGUGACGAGGCCUCUGAG&UAUUUUAUCUUCGUUACCUUU	2	0.999565582530106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN33986_c0_g1_1161_TPlot.pdf
TRINITY_DN33986_c0_g1:1641	si_a660	TRINITY_DN33986_c0_g1	1630	1651	1641	-36.60	-25.20	0.688524590163934	7.5	1-4,1651-1648;6-12,1645-1639;14-21,1637-1630	5-5,1647-1646[AILt];13-13,1638-1638[SIL]	((((((((.(((((((..((((&))))-.))))))).))))))))	GGGGUCAGCAGGCAUUGAUCCG&CGGG-AAAUGCCUAUUGAUUCC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN33986_c0_g1_1641_TPlot.pdf
TRINITY_DN33986_c0_g1:569	si_a183	TRINITY_DN33986_c0_g1	554	578	569	-30.10	-19.90	0.661129568106312	10.5	1-4,578-575;7-14,572-565;15-21,560-554	5-6,574-573[SIL];x-x,564-561[BULt]	(((((((....((((((((..((((&))))..))))))))----)))))))	GACAGGGCCCUGAAGAUGUGCUCUG&UAGAUAAUAUCUUU----CCCUGUU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN33986_c0_g1_569_TPlot.pdf
TRINITY_DN33987_c0_g1:996	si_a776	TRINITY_DN33987_c0_g1	984	1005	996	-27.10	-18.90	0.697416974169742	7.5	3-10,1003-996;11-17,994-988;19-21,986-984	1-2,1005-1004[UP5];x-x,995-995[BULt];18-18,987-987[SIL]	(((.(((((((.((((((((..&..))))))))-))))))).)))	AGAUUAGAAGAUGUUGGAUCUG&UUGAUUCAAC-UCUUCUAUUUU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN33987_c0_g1_996_TPlot.pdf
TRINITY_DN3398_c0_g1:1231	si_a789	TRINITY_DN3398_c0_g1	1220	1240	1231	-24.80	-16.50	0.665322580645161	10	3-5,1238-1236;7-19,1234-1222	1-2,1240-1239[UP5];6-6,1235-1235[SIL];20-21,1221-1220[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	CAUGGAAAAUGGAGACGUAAG&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999995256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN3398_c0_g1_1231_TPlot.pdf
TRINITY_DN3399_c0_g1:3119	si_s71	TRINITY_DN3399_c0_g1	3108	3128	3119	-25.70	-19.30	0.750972762645914	7	2-9,3127-3120;12-21,3117-3108	1-1,3128-3128[UP5];10-11,3119-3118[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	AGGAAGGGAACUAAAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	4	0.999996152107084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3399_c0_g1_3119_TPlot.pdf
TRINITY_DN3399_c0_g1:3120	si_s70	TRINITY_DN3399_c0_g1	3109	3129	3120	-25.80	-18.00	0.697674418604651	9	3-10,3127-3120;13-21,3117-3109	1-2,3129-3128[UP5];11-12,3119-3118[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	GGAAGGGAACUAAAUGGAAAU&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999999902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3399_c0_g1_3120_TPlot.pdf
TRINITY_DN3399_c0_g1:7888	si_s253	TRINITY_DN3399_c0_g1	7875	7897	7888	-29.50	-19.40	0.657627118644068	10	2-11,7896-7887;12-18,7884-7878	1-1,7897-7897[UP5];x-x,7886-7885[BULt];19-21,7877-7875[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	AACGGUGAUAUUUAUCGGGAGAC&AUUUCCCGAUA--UAUUACUCAA	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN3399_c0_g1_7888_TPlot.pdf
TRINITY_DN339_c0_g1:1078	si_s803	TRINITY_DN339_c0_g1	1067	1087	1078	-26.00	-20.10	0.773076923076923	8.5	1-16,1087-1072	17-21,1071-1067[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGAUAGUAGCGAGGAUGAGAU&AUUUUAUCUUCGUUACCUUUU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN339_c0_g1_1078_TPlot.pdf
TRINITY_DN339_c0_g1:1082	si_s799	TRINITY_DN339_c0_g1	1071	1092	1082	-30.00	-21.70	0.723333333333333	7.5	1-3,1092-1090;4-20,1088-1072	x-x,1089-1089[BULt];21-21,1071-1071[UP3]	.(((((((((((((((((.(((&)))-))))))))))))))))).	AGUAGCGAGGAUGAGAUAGUGG&UCG-UAUUUUAUCUUCGUUACC	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN339_c0_g1_1082_TPlot.pdf
TRINITY_DN339_c0_g1:1085	si_s796	TRINITY_DN339_c0_g1	1074	1094	1085	-30.30	-20.70	0.683168316831683	10	2-4,1093-1091;7-21,1088-1074	1-1,1094-1094[UP5];5-6,1090-1089[SIL]	(((((((((((((((..(((.&.)))..)))))))))))))))	AGCGAGGAUGAGAUAGUGGUA&AGCUCGUAUUUUAUCUUCGUU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN339_c0_g1_1085_TPlot.pdf
TRINITY_DN339_c0_g1:1086	si_s795	TRINITY_DN339_c0_g1	1075	1095	1086	-30.30	-20.10	0.663366336633663	11.5	3-5,1093-1091;8-21,1088-1075	1-2,1095-1094[UP5];6-7,1090-1089[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	GCGAGGAUGAGAUAGUGGUAC&AAGCUCGUAUUUUAUCUUCGU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN339_c0_g1_1086_TPlot.pdf
TRINITY_DN339_c0_g1:1679	si_a351	TRINITY_DN339_c0_g1	1668	1688	1679	-20.50	-14.10	0.68780487804878	10.5	4-19,1685-1670	1-3,1688-1686[UP5];20-21,1669-1668[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCUAAAAUAGAGUUGAUGAAU&AAAUAUUAAUUCUAUUUUGAU	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN339_c0_g1_1679_TPlot.pdf
TRINITY_DN339_c0_g1:2326	si_s894	TRINITY_DN339_c0_g1	2315	2335	2326	-29.10	-20.00	0.687285223367698	13	5-17,2331-2319	1-4,2335-2332[UP5];18-21,2318-2315[UP3]	....(((((((((((((....&....)))))))))))))....	UCAGUGAAGAGGAAGCUAUUU&AAUAGGCUUUCUCUUCAAUUU	4	0.999976817192693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN339_c0_g1_2326_TPlot.pdf
TRINITY_DN339_c0_g1:2327	si_s893	TRINITY_DN339_c0_g1	2316	2335	2327	-29.10	-20.20	0.694158075601375	6	1-6,2335-2330;8-18,2329-2319	7-7,x-x[BULq];19-21,2318-2316[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	CAGUGAAGAGGAAG-CUAUUU&AAAUAGGCUUUCUCUUCAAUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN339_c0_g1_2327_TPlot.pdf
TRINITY_DN339_c0_g1:2328	si_s892	TRINITY_DN339_c0_g1	2317	2336	2328	-29.50	-21.30	0.722033898305085	5	1-7,2336-2330;9-19,2329-2319	8-8,x-x[BULq];20-21,2318-2317[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	AGUGAAGAGGAAG-CUAUUUA&UAAAUAGGCUUUCUCUUCAAU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN339_c0_g1_2328_TPlot.pdf
TRINITY_DN339_c0_g1:2329	si_s891	TRINITY_DN339_c0_g1	2318	2337	2329	-29.60	-22.60	0.763513513513513	3.5	1-8,2337-2330;10-20,2329-2319	9-9,x-x[BULq];21-21,2318-2318[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	GUGAAGAGGAAG-CUAUUUAU&AUAAAUAGGCUUUCUCUUCAA	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN339_c0_g1_2329_TPlot.pdf
TRINITY_DN339_c0_g1:2330	si_s890	TRINITY_DN339_c0_g1	2319	2338	2330	-29.50	-22.70	0.769491525423729	3.5	2-9,2337-2330;11-21,2329-2319	1-1,2338-2338[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	UGAAGAGGAAG-CUAUUUAUG&AAUAAAUAGGCUUUCUCUUCA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN339_c0_g1_2330_TPlot.pdf
TRINITY_DN339_c0_g1:2331	si_s888	TRINITY_DN339_c0_g1	2321	2340	2331	-26.80	-18.30	0.682835820895522	7.5	4-11,2337-2330;13-21,2329-2321	1-3,2340-2338[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AAGAGGAAG-CUAUUUAUGUA&AAAAUAAAUAGGCUUUCUCUU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN339_c0_g1_2331_TPlot.pdf
TRINITY_DN33_c0_g1:1091	si_s799	TRINITY_DN33_c0_g1	1080	1099	1091	-30.00	-19.90	0.663333333333333	7.5	1-3,1099-1097;5-18,1096-1083	4-4,x-x[BULq];19-21,1082-1080[UP3]	...((((((((((((((-(((&))).))))))))))))))...	ACCGACGAAGAUGAAGU-CGA&UCGUAUUUUAUCUUCGUUACC	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN33_c0_g1_1091_TPlot.pdf
TRINITY_DN33_c0_g1:1093	si_s797	TRINITY_DN33_c0_g1	1082	1101	1093	-30.00	-23.00	0.766666666666667	6.5	2-5,1100-1097;7-20,1096-1083	1-1,1101-1101[UP5];6-6,x-x[BULq];21-21,1082-1082[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	CGACGAAGAUGAAGU-CGAGA&GCUCGUAUUUUAUCUUCGUUA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN33_c0_g1_1093_TPlot.pdf
TRINITY_DN33_c0_g1:1096	si_s794	TRINITY_DN33_c0_g1	1085	1104	1096	-31.20	-20.30	0.650641025641026	10.5	5-8,1100-1097;10-21,1096-1085	1-4,1104-1101[UP5];9-9,x-x[BULq]	((((((((((((-((((....&....)))).))))))))))))	CGAAGAUGAAGU-CGAGAAAG&CAAGCUCGUAUUUUAUCUUCG	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN33_c0_g1_1096_TPlot.pdf
TRINITY_DN33_c0_g1:333	si_s774	TRINITY_DN33_c0_g1	322	341	333	-24.70	-17.30	0.700404858299595	7	1-6,341-336;9-21,334-322	7-8,335-335[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GUUUUGUGGCAAUU-UGGUUA&UAAUUACUAUUGCUAUAAAAC	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN33_c0_g1_333_TPlot.pdf
TRINITY_DN33_c0_g2:953	si_a249	TRINITY_DN33_c0_g2	941	962	953	-41.10	-28.60	0.695863746958638	6.5	1-8,962-955;10-15,953-948;16-18,946-944;20-21,942-941	9-9,954-954[SIL];x-x,947-947[BULt];19-19,943-943[SIL]	((.(((.((((((.((((((((&)))))))).))))))-))).))	CCGCGGUUGCGAUGGGGGGAUU&GAUCCCCCGAUUGUA-UCGAGG	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a249_TRINITY_DN33_c0_g2_953_TPlot.pdf
TRINITY_DN34001_c0_g2:2110	si_a407	TRINITY_DN34001_c0_g2	2099	2119	2110	-19.80	-13.00	0.656565656565657	13	3-16,2117-2104	1-2,2119-2118[UP5];17-21,2103-2099[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGUCUAGUGUAAGCAGGGCUG&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN34001_c0_g2_2110_TPlot.pdf
TRINITY_DN34002_c2_g1:117	si_a734	TRINITY_DN34002_c2_g1	106	126	117	-42.40	-27.80	0.655660377358491	8.5	1-4,126-123;6-7,121-120;9-18,118-109	5-5,122-122[SIL];8-8,119-119[SIL];19-21,108-106[UP3]	...((((((((((.((.((((&)))).)).))))))))))...	UUAGCCAGGGGUGUAGCUGCU&GGCAUCUUUACCCCUGGCCAU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN34002_c2_g1_117_TPlot.pdf
TRINITY_DN34002_c4_g1:1505	si_s635	TRINITY_DN34002_c4_g1	1494	1514	1505	-39.80	-26.60	0.668341708542714	10.5	4-18,1511-1497	1-3,1514-1512[UP5];19-21,1496-1494[UP3]	...(((((((((((((((...&...)))))))))))))))...	AACGGGCAGAUGUCUACGCUU&UUUCGUAGGCGUUUGCCCUCG	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN34002_c4_g1_1505_TPlot.pdf
TRINITY_DN34018_c0_g1:440	si_a110	TRINITY_DN34018_c0_g1	429	448	440	-27.80	-18.60	0.669064748201439	13	1-3,448-446;9-19,441-431	4-8,445-442[AILq];20-21,430-429[UP3]	..(((((((((((....-(((&))).....)))))))))))..	UUGGCAAGCUCGUUUUG-AUC&GAUAAAAUACGAGCUUGUUUU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN34018_c0_g1_440_TPlot.pdf
TRINITY_DN34018_c0_g1:441	si_a109	TRINITY_DN34018_c0_g1	430	449	441	-28.50	-18.70	0.656140350877193	13	2-4,448-446;10-20,441-431	1-1,449-449[UP5];5-9,445-442[AILq];21-21,430-430[UP3]	.(((((((((((....-(((.&.))).....))))))))))).	UGGCAAGCUCGUUUUG-AUCA&AGAUAAAAUACGAGCUUGUUU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN34018_c0_g1_441_TPlot.pdf
TRINITY_DN34018_c0_g1:623	si_s652	TRINITY_DN34018_c0_g1	613	632	623	-40.20	-26.40	0.656716417910448	7	1-5,632-628;8-11,625-622;13-15,621-619;17-21,617-613	6-7,627-626[SIL];12-12,x-x[BULq];16-16,618-618[SIL]	(((((.(((-((((..(((((&)))))..)))).))).)))))	CGAUCGCCC-AUUGGAUCGAG&CUCGAUACAAUCGGGGGAUCG	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s652_TRINITY_DN34018_c0_g1_623_TPlot.pdf
TRINITY_DN34018_c0_g1:807	si_s630	TRINITY_DN34018_c0_g1	794	816	807	-35.60	-29.10	0.817415730337079	6	1-12,816-805;13-17,803-799;19-21,796-794	x-x,804-804[BULt];18-18,798-797[AILt]	(((..(((((.((((((((((((&))))))))))))-)))))-.)))	GCAUCACGCCGUACGAGGAGAUC&GAUCUUUUCGUA-GGCGU-UUGC	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN34018_c0_g1_807_TPlot.pdf
TRINITY_DN3401_c0_g1:1391	si_s632	TRINITY_DN3401_c0_g1	1379	1400	1391	-38.20	-25.10	0.657068062827225	16	8-18,1393-1383;19-21,1381-1379	1-7,1400-1394[UP5];x-x,1382-1382[BULt]	(((.(((((((((((.......&.......)))))))))))-)))	GGGACGAGCGCCUGCUUCGUCG&UCUUUUCGUAGGCGUUUG-CCC	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN3401_c0_g1_1391_TPlot.pdf
TRINITY_DN3401_c0_g1:1771	si_s86	TRINITY_DN3401_c0_g1	1760	1780	1771	-32.90	-22.10	0.671732522796353	14	8-21,1773-1760	1-7,1780-1774[UP5]	((((((((((((((.......&.......))))))))))))))	AGCGAGGAGGAAGACCACGGC&UUUCCUUUCUUCUUCUUCGCU	2	0.999999999996017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3401_c0_g1_1771_TPlot.pdf
TRINITY_DN3401_c0_g1:2381	si_a193	TRINITY_DN3401_c0_g1	2370	2390	2381	-30.90	-21.90	0.70873786407767	10	1-8,2390-2383;10-15,2381-2376	9-9,2382-2382[SIL];16-21,2375-2370[UP3]	......((((((.((((((((&)))))))).))))))......	CAGGCGAGUGAAGGGGGGAAG&CUUUCCCUGUUCACUAAUAAA	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN3401_c0_g1_2381_TPlot.pdf
TRINITY_DN3401_c0_g1:3583	si_a81	TRINITY_DN3401_c0_g1	3572	3593	3583	-23.00	-15.60	0.678260869565217	10.5	3-9,3591-3585;11-21,3582-3572	1-2,3593-3592[UP5];10-10,3584-3583[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	CUUUUCUUGAUUUGUGGGAAUU&GUUUUUCAU-UAUUAAGAAAAG	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN3401_c0_g1_3583_TPlot.pdf
TRINITY_DN34023_c0_g1:280	si_a869	TRINITY_DN34023_c0_g1	269	289	280	-24.80	-19.00	0.766129032258065	7	4-14,286-276;16-21,274-269	1-3,289-287[UP5];15-15,275-275[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UUGCAGGUGAAUCUUUAAGCA&UUAUUAAAGAUUUAGUUGCAA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN34023_c0_g1_280_TPlot.pdf
TRINITY_DN3402_c0_g1:1502	si_s74	TRINITY_DN3402_c0_g1	1491	1511	1502	-25.00	-16.40	0.656	11.5	1-3,1511-1509;6-18,1506-1494	4-5,1508-1507[SIL];19-21,1493-1491[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	GCUGGGGAGGGGAAAAUUUGG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3402_c0_g1_1502_TPlot.pdf
TRINITY_DN3402_c0_g1:1503	si_s73	TRINITY_DN3402_c0_g1	1492	1512	1503	-24.00	-18.00	0.75	10.5	1-4,1512-1509;7-19,1506-1494	5-6,1508-1507[SIL];20-21,1493-1492[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	CUGGGGAGGGGAAAAUUUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999992323359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3402_c0_g1_1503_TPlot.pdf
TRINITY_DN3402_c0_g1:1504	si_s72	TRINITY_DN3402_c0_g1	1493	1513	1504	-24.10	-18.20	0.755186721991701	10	2-5,1512-1509;8-20,1506-1494	1-1,1513-1513[UP5];6-7,1508-1507[SIL];21-21,1493-1493[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	UGGGGAGGGGAAAAUUUGGAG&UUCUAUUUUUUUUCUUUCCUU	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3402_c0_g1_1504_TPlot.pdf
TRINITY_DN3402_c0_g1:1505	si_s71	TRINITY_DN3402_c0_g1	1494	1514	1505	-25.70	-18.80	0.731517509727627	9.5	2-6,1513-1509;9-21,1506-1494	1-1,1514-1514[UP5];7-8,1508-1507[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	GGGGAGGGGAAAAUUUGGAGA&CUUCUAUUUUUUUUCUUUCCU	3	0.999999997898661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3402_c0_g1_1505_TPlot.pdf
TRINITY_DN3402_c0_g1:1506	si_s70	TRINITY_DN3402_c0_g1	1495	1515	1506	-25.80	-17.70	0.686046511627907	11	3-7,1513-1509;10-21,1506-1495	1-2,1515-1514[UP5];8-9,1508-1507[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GGGAGGGGAAAAUUUGGAGAU&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999652675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3402_c0_g1_1506_TPlot.pdf
TRINITY_DN3402_c0_g1:1544	si_s86	TRINITY_DN3402_c0_g1	1533	1553	1544	-32.90	-23.40	0.711246200607903	7.5	1-5,1553-1549;8-16,1546-1538;18-21,1536-1533	6-7,1548-1547[SIL];17-17,1537-1537[SIL]	((((.(((((((((..(((((&)))))..))))))))).))))	AGUGCGGAGGAAGAUUGGAGA&UUUCCUUUCUUCUUCUUCGCU	3	0.999999983764423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3402_c0_g1_1544_TPlot.pdf
TRINITY_DN3402_c0_g1:1561	si_a393	TRINITY_DN3402_c0_g1	1550	1570	1561	-22.70	-15.20	0.669603524229075	13.5	5-9,1566-1562;12-21,1559-1550	1-4,1570-1567[UP5];10-11,1561-1560[SIL]	((((((((((..(((((....&....)))))..))))))))))	GAGACAGUUCCUUGUUCGAGA&UUAAGAAUAUAGAAUUGUUUU	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN3402_c0_g1_1561_TPlot.pdf
TRINITY_DN3402_c0_g1:1920	si_a703	TRINITY_DN3402_c0_g1	1908	1929	1920	-29.20	-19.20	0.657534246575342	9	2-10,1928-1920;11-17,1918-1912	1-1,1929-1929[UP5];x-x,1919-1919[BULt];18-21,1911-1908[UP3]	....(((((((.(((((((((.&.)))))))))-)))))))....	GACCUUUGGGAUUGUAUCAGUG&AACUGGUACA-UUCCAAAAUAA	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN3402_c0_g1_1920_TPlot.pdf
TRINITY_DN3402_c0_g1:1984	si_s83	TRINITY_DN3402_c0_g1	1973	1993	1984	-30.90	-20.30	0.656957928802589	8.5	2-10,1992-1984;13-20,1981-1974	1-1,1993-1993[UP5];11-12,1983-1982[SIL];21-21,1973-1973[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	AAAGGAGAAUUGAGGAAGGAG&UUCUUUCCUUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3402_c0_g1_1984_TPlot.pdf
TRINITY_DN3402_c0_g1:1985	si_s82	TRINITY_DN3402_c0_g1	1974	1994	1985	-28.90	-22.00	0.761245674740484	6.5	1-11,1994-1984;14-21,1981-1974	12-13,1983-1982[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AAGGAGAAUUGAGGAAGGAGA&UUUCUUUCCUUUCUUCUUCUU	3	0.999999903584718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3402_c0_g1_1985_TPlot.pdf
TRINITY_DN3402_c0_g1:1987	si_s80	TRINITY_DN3402_c0_g1	1976	1996	1987	-28.20	-20.70	0.734042553191489	6	2-13,1995-1984;16-21,1981-1976	1-1,1996-1996[UP5];14-15,1983-1982[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GGAGAAUUGAGGAAGGAGAAU&UUUUUCUUUCCUUUCUUCUUC	2	0.9999999495509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3402_c0_g1_1987_TPlot.pdf
TRINITY_DN3402_c0_g1:1988	si_s79	TRINITY_DN3402_c0_g1	1974	1997	1988	-26.20	-20.40	0.778625954198473	9	3-14,1995-1984;15-21,1980-1974	1-2,1997-1996[UP5];x-x,1983-1981[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	AAGGAGAAUUGAGGAAGGAGAAUA&UUUUUUCUUUCCUU---UCUUCUU	3	0.999999916323541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3402_c0_g1_1988_TPlot.pdf
TRINITY_DN3402_c0_g1:1989	si_s78	TRINITY_DN3402_c0_g1	1975	1998	1989	-26.20	-19.50	0.744274809160305	11	4-15,1995-1984;16-21,1980-1975	1-3,1998-1996[UP5];x-x,1983-1981[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	AGGAGAAUUGAGGAAGGAGAAUAU&UUUUUUUCUUUCCUU---UCUUCU	3	0.999999999998205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3402_c0_g1_1989_TPlot.pdf
TRINITY_DN3402_c0_g1:1990	si_s77	TRINITY_DN3402_c0_g1	1976	1999	1990	-25.50	-18.20	0.713725490196078	13	5-16,1995-1984;17-21,1980-1976	1-4,1999-1996[UP5];x-x,1983-1981[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	GGAGAAUUGAGGAAGGAGAAUAUU&UUUUUUUUCUUUCCUU---UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3402_c0_g1_1990_TPlot.pdf
TRINITY_DN3402_c0_g1:1991	si_s76	TRINITY_DN3402_c0_g1	1977	2000	1991	-23.60	-15.90	0.673728813559322	15	6-17,1995-1984;18-21,1980-1977	1-5,2000-1996[UP5];x-x,1983-1981[BULt]	((((...((((((((((((.....&.....))))))))))))---))))	GAGAAUUGAGGAAGGAGAAUAUUU&AUUUUUUUUCUUUCCUU---UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3402_c0_g1_1991_TPlot.pdf
TRINITY_DN3402_c0_g1:2145	si_a337	TRINITY_DN3402_c0_g1	2134	2154	2145	-30.80	-20.10	0.652597402597403	12	1-12,2154-2143	13-21,2142-2134[UP3]	.........((((((((((((&)))))))))))).........	GACUGAUAUGGGACGAGGGGU&AUUCCUUGUCCCGAAAAUAUU	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN3402_c0_g1_2145_TPlot.pdf
TRINITY_DN3402_c0_g1:2148	si_a334	TRINITY_DN3402_c0_g1	2137	2157	2148	-30.70	-20.10	0.654723127035831	14	4-15,2154-2143	1-3,2157-2155[UP5];16-21,2142-2137[UP3]	......((((((((((((...&...))))))))))))......	UGAUAUGGGACGAGGGGUUAA&UUUAUUCCUUGUCCCGAAAAU	2	0.998547150004088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN3402_c0_g1_2148_TPlot.pdf
TRINITY_DN3402_c0_g1:2149	si_a333	TRINITY_DN3402_c0_g1	2138	2158	2149	-30.60	-20.50	0.669934640522876	10	1-3,2158-2156;5-16,2154-2143	4-4,2155-2155[SIL];17-21,2142-2138[UP3]	.....((((((((((((.(((&))).)))))))))))).....	GAUAUGGGACGAGGGGUUAAA&UUUUAUUCCUUGUCCCGAAAA	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN3402_c0_g1_2149_TPlot.pdf
TRINITY_DN3402_c0_g1:2150	si_a332	TRINITY_DN3402_c0_g1	2139	2159	2150	-30.60	-21.20	0.69281045751634	9	1-4,2159-2156;6-17,2154-2143	5-5,2155-2155[SIL];18-21,2142-2139[UP3]	....((((((((((((.((((&)))).))))))))))))....	AUAUGGGACGAGGGGUUAAAA&UUUUUAUUCCUUGUCCCGAAA	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN3402_c0_g1_2150_TPlot.pdf
TRINITY_DN3402_c0_g1:2151	si_a331	TRINITY_DN3402_c0_g1	2140	2160	2151	-30.60	-21.30	0.696078431372549	8.5	2-5,2159-2156;7-18,2154-2143	1-1,2160-2160[UP5];6-6,2155-2155[SIL];19-21,2142-2140[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UAUGGGACGAGGGGUUAAAAC&UUUUUUAUUCCUUGUCCCGAA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN3402_c0_g1_2151_TPlot.pdf
TRINITY_DN3402_c0_g1:2152	si_a330	TRINITY_DN3402_c0_g1	2141	2161	2152	-30.50	-21.30	0.698360655737705	9.5	3-6,2159-2156;8-19,2154-2143	1-2,2161-2160[UP5];7-7,2155-2155[SIL];20-21,2142-2141[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	AUGGGACGAGGGGUUAAAACU&UUUUUUUAUUCCUUGUCCCGA	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN3402_c0_g1_2152_TPlot.pdf
TRINITY_DN3402_c0_g1:2153	si_a329	TRINITY_DN3402_c0_g1	2142	2162	2153	-29.60	-21.30	0.719594594594595	10.5	4-7,2159-2156;9-20,2154-2143	1-3,2162-2160[UP5];8-8,2155-2155[SIL];21-21,2142-2142[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	UGGGACGAGGGGUUAAAACUG&AUUUUUUUAUUCCUUGUCCCG	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3402_c0_g1_2153_TPlot.pdf
TRINITY_DN3402_c0_g1:2154	si_a328	TRINITY_DN3402_c0_g1	2143	2163	2154	-30.10	-20.60	0.684385382059801	11.5	5-8,2159-2156;10-21,2154-2143	1-4,2163-2160[UP5];9-9,2155-2155[SIL]	((((((((((((.((((....&....)))).))))))))))))	GGGACGAGGGGUUAAAACUGA&GAUUUUUUUAUUCCUUGUCCC	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN3402_c0_g1_2154_TPlot.pdf
TRINITY_DN34034_c0_g1:242	si_s163	TRINITY_DN34034_c0_g1	231	251	242	-38.60	-25.40	0.658031088082901	12	4-15,248-237	1-3,251-249[UP5];16-21,236-231[UP3]	......((((((((((((...&...))))))))))))......	CAAGACACCCCUGGCCGUCUU&UUCAUGGCCAGGGGUAAAGAU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s163_TRINITY_DN34034_c0_g1_242_TPlot.pdf
TRINITY_DN3404_c0_g1:648	si_a883	TRINITY_DN3404_c0_g1	637	657	648	-27.20	-19.00	0.698529411764706	6	2-3,656-655;5-20,653-638	1-1,657-657[UP5];4-4,654-654[SIL];21-21,637-637[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	GGUUAUUAUGUUGAUUGGAAA&GUUGCAAUCAAUAUAGUAAUA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN3404_c0_g1_648_TPlot.pdf
TRINITY_DN3404_c0_g1:690	si_s72	TRINITY_DN3404_c0_g1	679	699	690	-24.10	-16.30	0.676348547717842	6	1-4,699-696;6-12,694-688;14-21,686-679	5-5,695-695[SIL];13-13,687-687[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	AAGGGAGGUGAAAAAAGAGGA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3404_c0_g1_690_TPlot.pdf
TRINITY_DN34054_c0_g1:286	si_s68	TRINITY_DN34054_c0_g1	275	295	286	-23.10	-17.70	0.766233766233766	9	4-21,292-275	1-3,295-293[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAAGGGGGAAAGUGGAAGAAA&CAACUUCUAUUUUUUUUCUUU	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN34054_c0_g1_286_TPlot.pdf
TRINITY_DN34054_c0_g1:314	si_a358	TRINITY_DN34054_c0_g1	303	323	314	-29.10	-21.10	0.725085910652921	6	3-7,321-317;9-15,315-309;17-21,307-303	1-2,323-322[UP5];8-8,316-316[SIL];16-16,308-308[SIL]	(((((.(((((((.(((((..&..))))).))))))).)))))	UGAUCGGAUCAAAUUAGAAAG&AAUUCUAUUUUGAUCGGAUCA	0	0.0261672870135716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN34054_c0_g1_314_TPlot.pdf
TRINITY_DN3407_c1_g1:456	si_s76	TRINITY_DN3407_c1_g1	444	465	456	-23.60	-15.40	0.652542372881356	11.5	4-6,462-460;8-18,458-448;19-21,446-444	1-3,465-463[UP5];7-7,459-459[SIL];x-x,447-447[BULt]	(((.(((((((((((.(((...&...))).)))))))))))-)))	GAGUAAAGGAGAGAGUGAAUGA&AUUUUUUUUCUUUCCUUU-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3407_c1_g1_456_TPlot.pdf
TRINITY_DN3408_c0_g1:412	si_a501	TRINITY_DN3408_c0_g1	399	422	412	-33.50	-22.80	0.680597014925373	8.5	1-4,422-419;5-17,417-405;18-19,402-401	x-x,418-418[BULt];x-x,404-403[BULt];20-21,400-399[UP3]	..((..(((((((((((((.((((&))))-)))))))))))))--))..	GGCCGAGAGGAAGACGAAGUAAUG&CGUU-UUUCGUCUUCCUU--GGAA	4	0.999999887220161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3408_c0_g1_412_TPlot.pdf
TRINITY_DN3408_c0_g1:925	si_s504	TRINITY_DN3408_c0_g1	914	934	925	-24.70	-16.30	0.659919028340081	5	1-11,934-924;12-16,922-918;18-21,917-914	x-x,923-923[BULt];17-17,x-x[BULq]	((((-(((((.(((((((((((&)))))))))))-))))).))))	AGGA-GUAGAUGUUGUUUUGUU&AACAAAACAAU-UCUAUAUUCU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN3408_c0_g1_925_TPlot.pdf
TRINITY_DN3408_c0_g1:927	si_s502	TRINITY_DN3408_c0_g1	915	936	927	-22.40	-15.80	0.705357142857143	6	2-13,935-924;14-18,922-918	1-1,936-936[UP5];x-x,923-923[BULt];19-21,917-915[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	GGAGUAGAUGUUGUUUUGUUUC&UAAACAAAACAAU-UCUAUAUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN3408_c0_g1_927_TPlot.pdf
TRINITY_DN3408_c0_g1:929	si_s500	TRINITY_DN3408_c0_g1	917	938	929	-22.80	-15.80	0.692982456140351	8	4-15,935-924;16-20,922-918	1-3,938-936[UP5];x-x,923-923[BULt];21-21,917-917[UP3]	.(((((.((((((((((((...&...))))))))))))-))))).	AGUAGAUGUUGUUUUGUUUCAA&UAUAAACAAAACAAU-UCUAUA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN3408_c0_g1_929_TPlot.pdf
TRINITY_DN3408_c0_g1:930	si_s499	TRINITY_DN3408_c0_g1	918	939	930	-22.60	-15.30	0.676991150442478	9	5-16,935-924;17-21,922-918	1-4,939-936[UP5];x-x,923-923[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GUAGAUGUUGUUUUGUUUCAAA&AUAUAAACAAAACAAU-UCUAU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN3408_c0_g1_930_TPlot.pdf
TRINITY_DN3409_c0_g1:353	si_s71	TRINITY_DN3409_c0_g1	344	362	353	-25.70	-16.90	0.657587548638132	7	1-10,362-353;13-19,352-346	11-12,x-x[BULq];20-21,345-344[UP3]	..(((((((--((((((((((&))))))))))..)))))))..	ACGAAAGAA--GAAAUAGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3409_c0_g1_353_TPlot.pdf
TRINITY_DN340_c0_g1:225	si_a215	TRINITY_DN340_c0_g1	208	234	225	-27.80	-18.20	0.654676258992806	16	2-11,233-224;12-21,217-208	1-1,234-234[UP5];x-x,223-218[BULt]	((((((((((......((((((((((.&.))))))))))------))))))))))	AAAUAUGGGUUUAAUUUUGAUUGGUCU&CGACUAAUUAA------ACUCAUGUUU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a215_TRINITY_DN340_c0_g1_225_TPlot.pdf
TRINITY_DN340_c0_g1:727	si_a194	TRINITY_DN340_c0_g1	718	736	727	-29.40	-19.40	0.659863945578231	5	3-12,734-725;15-21,724-718	1-2,736-735[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	AUUUAUU--UGAACAGGGAUC&UUUCCCUGUUCACUAAUAAAU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN340_c0_g1_727_TPlot.pdf
TRINITY_DN34109_c1_g2:100	si_a474	TRINITY_DN34109_c1_g2	88	109	100	-23.60	-17.00	0.720338983050847	5.5	3-13,107-97;14-21,95-88	1-2,109-108[UP5];x-x,96-96[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UCUAUAUAUGCAAUAAUUAUUA&AUGUAAUUAUUGU-UAUAUAGA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN34109_c1_g2_100_TPlot.pdf
TRINITY_DN34109_c1_g2:98	si_a476	TRINITY_DN34109_c1_g2	86	107	98	-22.90	-18.00	0.786026200873363	4.5	1-11,107-97;12-20,95-87	x-x,96-96[BULt];21-21,86-86[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	UUUCUAUAUAUGCAAUAAUUAU&GUAAUUAUUGU-UAUAUAGAAU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN34109_c1_g2_98_TPlot.pdf
TRINITY_DN34109_c1_g2:99	si_a475	TRINITY_DN34109_c1_g2	87	108	99	-23.50	-17.90	0.761702127659574	5	2-12,107-97;13-21,95-87	1-1,108-108[UP5];x-x,96-96[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	UUCUAUAUAUGCAAUAAUUAUU&UGUAAUUAUUGU-UAUAUAGAA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN34109_c1_g2_99_TPlot.pdf
TRINITY_DN34109_c2_g1:72	si_a398	TRINITY_DN34109_c2_g1	61	81	72	-22.40	-15.90	0.709821428571429	8	2-3,80-79;5-20,77-62	1-1,81-81[UP5];4-4,78-78[SIL];21-21,61-61[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	CGGACAAAAUAAUUCUGAGUG&AAUAUAGAAUUGUUUUGUUUA	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN34109_c2_g1_72_TPlot.pdf
TRINITY_DN3410_c0_g4:1231	si_a410	TRINITY_DN3410_c0_g4	1220	1241	1231	-17.80	-12.70	0.713483146067416	8	1-8,1241-1234;9-18,1232-1223	x-x,1233-1233[BULt];19-21,1222-1220[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	AUAAUUUAAGUAUGGAACAGAA&UUUUGUUU-AUAUUUAAAUAAA	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3410_c0_g4_1231_TPlot.pdf
TRINITY_DN3410_c0_g4:1232	si_a409	TRINITY_DN3410_c0_g4	1221	1242	1232	-19.50	-12.70	0.651282051282051	7.5	2-9,1241-1234;10-19,1232-1223	1-1,1242-1242[UP5];x-x,1233-1233[BULt];20-21,1222-1221[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	UAAUUUAAGUAUGGAACAGAAA&GUUUUGUUU-AUAUUUAAAUAA	2	0.999999999856464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3410_c0_g4_1232_TPlot.pdf
TRINITY_DN3410_c0_g4:1826	si_s484	TRINITY_DN3410_c0_g4	1815	1837	1826	-20.50	-14.00	0.682926829268293	8	2-7,1836-1831;8-20,1828-1816	1-1,1837-1837[UP5];x-x,1830-1829[BULt];21-21,1815-1815[UP3]	.(((((((((((((..((((((.&.))))))--))))))))))))).	AUAUAUUUAGAUGACAAUAUAGA&CCUAUAU--UUAUUUAAAUAUAA	3	0.996100152895399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN3410_c0_g4_1826_TPlot.pdf
TRINITY_DN3410_c0_g4:185	si_s325	TRINITY_DN3410_c0_g4	173	194	185	-28.60	-21.40	0.748251748251748	6.5	3-17,192-178;18-21,176-173	1-2,194-193[UP5];x-x,177-177[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	AAUCGGUGUGUUUGUGACGACC&UCUUGUUACAAACAUAC-GAUU	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s325_TRINITY_DN3410_c0_g4_185_TPlot.pdf
TRINITY_DN3410_c0_g4:354	si_s191	TRINITY_DN3410_c0_g4	343	363	354	-26.60	-17.60	0.661654135338346	9	3-13,361-351;15-20,349-344	1-2,363-362[UP5];14-14,350-350[SIL];21-21,343-343[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	AAUAUUCGGAGAUAGUUGUAU&UAACGAUUAUUUUGGAAUGUA	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN3410_c0_g4_354_TPlot.pdf
TRINITY_DN3410_c0_g4:661	si_a142	TRINITY_DN3410_c0_g4	649	670	661	-23.50	-16.50	0.702127659574468	6	3-16,668-655;17-20,653-650	1-2,670-669[UP5];x-x,654-654[BULt];21-21,649-649[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	AUAAAUACAACAAUGAUUAAAC&AAUUAAUCGUUGUUGU-UUUAA	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3410_c0_g4_661_TPlot.pdf
TRINITY_DN3410_c0_g4:662	si_a141	TRINITY_DN3410_c0_g4	650	671	662	-23.80	-16.30	0.684873949579832	7	4-17,668-655;18-21,653-650	1-3,671-669[UP5];x-x,654-654[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	UAAAUACAACAAUGAUUAAACG&UAAUUAAUCGUUGUUGU-UUUA	3	0.99999994418289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3410_c0_g4_662_TPlot.pdf
TRINITY_DN3410_c0_g4:808	si_s81	TRINITY_DN3410_c0_g4	797	818	808	-28.90	-19.00	0.657439446366782	10	1-5,818-814;6-17,812-801;20-21,798-797	x-x,813-813[BULt];18-19,800-799[SIL]	((..((((((((((((.(((((&)))))-))))))))))))..))	GGUUGAAGAGGGGGGAUGAAGG&UUUUC-UUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3410_c0_g4_808_TPlot.pdf
TRINITY_DN3410_c0_g4:811	si_s807	TRINITY_DN3410_c0_g4	801	820	811	-28.90	-20.40	0.705882352941176	7.5	1-10,820-811;12-20,810-802	11-11,x-x[BULq];21-21,801-801[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	GAAGAGGGGG-GAUGAAGGUA&UAUCUUCGUUACCUUUUCUUA	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3410_c0_g4_811_TPlot.pdf
TRINITY_DN3410_c0_g4:812	si_s806	TRINITY_DN3410_c0_g4	802	821	812	-28.60	-20.20	0.706293706293706	7.5	2-11,820-811;13-21,810-802	1-1,821-821[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AAGAGGGGG-GAUGAAGGUAU&UUAUCUUCGUUACCUUUUCUU	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN3410_c0_g4_812_TPlot.pdf
TRINITY_DN3410_c0_g4:813	si_a555	TRINITY_DN3410_c0_g4	802	822	813	-33.70	-22.20	0.658753709198813	8.5	1-3,822-820;5-17,818-806	4-4,819-819[SIL];18-21,805-802[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AAGAGGGGGGAUGAAGGUAUA&UAUUUCUUUAUCUCCCCGUGA	2	0.987642480539365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN3410_c0_g4_813_TPlot.pdf
TRINITY_DN3410_c0_g4:814	si_a554	TRINITY_DN3410_c0_g4	803	823	814	-34.40	-22.40	0.651162790697674	8.5	2-4,822-820;6-18,818-806	1-1,823-823[UP5];5-5,819-819[SIL];19-21,805-803[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	AGAGGGGGGAUGAAGGUAUAA&CUAUUUCUUUAUCUCCCCGUG	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN3410_c0_g4_814_TPlot.pdf
TRINITY_DN3410_c0_g4:815	si_a553	TRINITY_DN3410_c0_g4	804	824	815	-33.70	-22.40	0.664688427299703	9.5	3-5,822-820;7-19,818-806	1-2,824-823[UP5];6-6,819-819[SIL];20-21,805-804[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	GAGGGGGGAUGAAGGUAUAAA&UCUAUUUCUUUAUCUCCCCGU	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN3410_c0_g4_815_TPlot.pdf
TRINITY_DN3410_c0_g4:816	si_a552	TRINITY_DN3410_c0_g4	805	825	816	-33.10	-22.40	0.676737160120846	10.5	4-6,822-820;8-20,818-806	1-3,825-823[UP5];7-7,819-819[SIL];21-21,805-805[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	AGGGGGGAUGAAGGUAUAAAU&AUCUAUUUCUUUAUCUCCCCG	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN3410_c0_g4_816_TPlot.pdf
TRINITY_DN3410_c0_g4:817	si_a551	TRINITY_DN3410_c0_g4	806	826	817	-31.60	-22.00	0.69620253164557	11	5-7,822-820;9-21,818-806	1-4,826-823[UP5];8-8,819-819[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GGGGGGAUGAAGGUAUAAAUC&AAUCUAUUUCUUUAUCUCCCC	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3410_c0_g4_817_TPlot.pdf
TRINITY_DN34115_c0_g1:1391	si_a789	TRINITY_DN34115_c0_g1	1380	1401	1391	-24.80	-16.60	0.669354838709677	7	1-9,1401-1393;10-12,1391-1389;14-18,1387-1383	x-x,1392-1392[BULt];13-13,1388-1388[SIL];19-21,1382-1380[UP3]	...(((((.(((.(((((((((&)))))))))-))).)))))...	UACGGAAAUUAGAAGAAAUAGA&UCUAUUUUU-CUAUUUUCCAAU	4	0.999999999950976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN34115_c0_g1_1391_TPlot.pdf
TRINITY_DN34115_c0_g1:1404	si_a785	TRINITY_DN34115_c0_g1	1393	1415	1404	-25.90	-17.88	0.69034749034749	10.5	1-6,1415-1410;9-20,1405-1394	7-8,1409-1406[AILt];21-21,1393-1393[UP3]	.((((((((((((....((((((&))))))--..)))))))))))).	AGAAAUAGAAAAAGCGUGGAGAG&CUCUUC--UAUUUUUCUAUUUUC	2	0.99999987943424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN34115_c0_g1_1404_TPlot.pdf
TRINITY_DN34115_c0_g1:1405	si_a784	TRINITY_DN34115_c0_g1	1394	1416	1405	-24.70	-17.88	0.723886639676113	10.5	2-7,1415-1410;10-21,1405-1394	1-1,1416-1416[UP5];8-9,1409-1406[AILt]	((((((((((((....((((((.&.))))))--..))))))))))))	GAAAUAGAAAAAGCGUGGAGAGG&ACUCUUC--UAUUUUUCUAUUUU	2	0.999625851716806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN34115_c0_g1_1405_TPlot.pdf
TRINITY_DN34115_c0_g1:1406	si_a783	TRINITY_DN34115_c0_g1	1395	1417	1406	-24.70	-16.78	0.679352226720648	12	3-8,1415-1410;11-21,1405-1395	1-2,1417-1416[UP5];9-10,1409-1406[AILt]	(((((((((((....((((((..&..))))))--..)))))))))))	AAAUAGAAAAAGCGUGGAGAGGG&AACUCUUC--UAUUUUUCUAUUU	4	0.999999999999814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN34115_c0_g1_1406_TPlot.pdf
TRINITY_DN34115_c0_g1:1407	si_a319	TRINITY_DN34115_c0_g1	1396	1416	1407	-22.40	-14.60	0.651785714285714	10.5	5-10,1412-1407;12-21,1405-1396	1-4,1416-1413[UP5];11-11,1406-1406[SIL]	((((((((((.((((((....&....)))))).))))))))))	AAUAGAAAAAGCGUGGAGAGG&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN34115_c0_g1_1407_TPlot.pdf
TRINITY_DN34115_c0_g1:1576	si_a422	TRINITY_DN34115_c0_g1	1565	1585	1576	-27.20	-18.60	0.683823529411765	11	6-21,1580-1565	1-5,1585-1581[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGGAUUCUAUGUUUACAUAG&UUAAAUAAAUAUAGGAUCCGU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN34115_c0_g1_1576_TPlot.pdf
TRINITY_DN34115_c0_g1:1582	si_a416	TRINITY_DN34115_c0_g1	1571	1591	1582	-20.50	-13.60	0.663414634146341	9	1-9,1591-1583;12-21,1580-1571	10-11,1582-1581[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	UCUAUGUUUACAUAGGUGUGA&UUAUAUUUAAAUAAAUAUAGG	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN34115_c0_g1_1582_TPlot.pdf
TRINITY_DN34115_c0_g1:1583	si_a415	TRINITY_DN34115_c0_g1	1572	1592	1583	-18.10	-12.70	0.701657458563536	9.5	2-10,1591-1583;13-21,1580-1572	1-1,1592-1592[UP5];11-12,1582-1581[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	CUAUGUUUACAUAGGUGUGAU&UUUAUAUUUAAAUAAAUAUAG	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN34115_c0_g1_1583_TPlot.pdf
TRINITY_DN34115_c0_g1:1669	si_a448	TRINITY_DN34115_c0_g1	1658	1678	1669	-25.50	-17.00	0.666666666666667	8	1-16,1678-1663;19-21,1660-1658	17-18,1662-1661[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	AUAGUAUAGCGGUUGUUUCGU&AUGAGAUAAUUGUUGUUAUAU	2	0.995490768745023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN34115_c0_g1_1669_TPlot.pdf
TRINITY_DN34115_c0_g1:922	si_s80	TRINITY_DN34115_c0_g1	911	931	922	-28.20	-18.70	0.663120567375887	17	9-21,923-911	1-8,931-924[UP5]	(((((((((((((........&........)))))))))))))	GGAGAAGGAGGGAUAUGUUGC&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN34115_c0_g1_922_TPlot.pdf
TRINITY_DN34124_c0_g1:1730	si_a21	TRINITY_DN34124_c0_g1	1719	1739	1730	-24.30	-20.30	0.835390946502058	7	1-8,1739-1732;10-19,1730-1721	9-9,1731-1731[SIL];20-21,1720-1719[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AAAGGACUGAAAUUGAAUGGG&CCUAUUUAUUUUUAGUUCUAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN34124_c0_g1_1730_TPlot.pdf
TRINITY_DN3412_c0_g1:1247	si_a318	TRINITY_DN3412_c0_g1	1236	1256	1247	-22.50	-14.90	0.662222222222222	12.5	6-19,1251-1238	1-5,1256-1252[UP5];20-21,1237-1236[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGGAAAAAAUUAUGGAAGCCA&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3412_c0_g1_1247_TPlot.pdf
TRINITY_DN34151_c0_g2:197	si_a393	TRINITY_DN34151_c0_g2	186	206	197	-22.70	-14.80	0.651982378854626	10.5	4-19,203-188	1-3,206-204[UP5];20-21,187-186[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAAUAAUUUUGUGUUCUGGC&UUAAGAAUAUAGAAUUGUUUU	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN34151_c0_g2_197_TPlot.pdf
TRINITY_DN34156_c0_g1:299	si_a788	TRINITY_DN34156_c0_g1	288	308	299	-24.80	-21.40	0.862903225806452	4.5	1-13,308-296;15-20,294-289	14-14,295-295[SIL];21-21,288-288[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	CUGGAGACUAGAAAAGUGGAA&UUCUAUUUUUCUAUUUUCCAA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN34156_c0_g1_299_TPlot.pdf
TRINITY_DN3415_c0_g1:1293	si_a765	TRINITY_DN3415_c0_g1	1282	1307	1293	-30.50	-22.20	0.727868852459016	14	1-5,1307-1303;6-9,1298-1295;10-21,1293-1282	x-x,1302-1299[BULt];x-x,1294-1294[BULt]	((((((((((((.((((....(((((&)))))----))))-))))))))))))	GUUGAAUCAGUCUAAGGCGUUGCCCA&UGGGU----UUUU-GAUUGAUUCAAC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN3415_c0_g1_1293_TPlot.pdf
TRINITY_DN3415_c0_g1:1888	si_s493	TRINITY_DN3415_c0_g1	1875	1897	1888	-19.80	-12.88	0.65050505050505	11	2-10,1896-1888;13-21,1883-1875	1-1,1897-1897[UP5];11-12,1887-1884[AILt]	(((((((((....(((((((((.&.)))))))))--..)))))))))	UUGUUUUGUCAAGAUAUUUGAGG&AUUUAAAUAU--AAACAAAACAA	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN3415_c0_g1_1888_TPlot.pdf
TRINITY_DN3416_c0_g1:2516	si_a817	TRINITY_DN3416_c0_g1	2505	2525	2516	-30.90	-20.20	0.653721682847896	6	1-15,2525-2511;18-19,2508-2507	16-17,2510-2509[SIL];20-21,2506-2505[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	CGCUAGCCUUUUUUCUUUUUC&GAAGAAGAAGAAAGGAAAGAA	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN3416_c0_g1_2516_TPlot.pdf
TRINITY_DN3416_c0_g1:831	si_a138	TRINITY_DN3416_c0_g1	820	840	831	-26.30	-17.20	0.653992395437262	7	1-15,840-826;17-18,824-823	16-16,825-825[SIL];19-21,822-820[UP3]	...((.(((((((((((((((&))))))))))))))).))...	AGUGAGAGCGAUUAGUUAUUA&UAGUAAUUAAUCGUUGUUGUU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN3416_c0_g1_831_TPlot.pdf
TRINITY_DN3416_c0_g1:833	si_a136	TRINITY_DN3416_c0_g1	822	842	833	-25.70	-17.20	0.669260700389105	8	3-17,840-826;19-20,824-823	1-2,842-841[UP5];18-18,825-825[SIL];21-21,822-822[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	UGAGAGCGAUUAGUUAUUAGU&AAUAGUAAUUAAUCGUUGUUG	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN3416_c0_g1_833_TPlot.pdf
TRINITY_DN3416_c0_g1:837	si_a132	TRINITY_DN3416_c0_g1	826	846	837	-26.80	-17.50	0.652985074626866	8	3-5,844-842;7-21,840-826	1-2,846-845[UP5];6-6,841-841[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AGCGAUUAGUUAUUAGUGUGG&UAGCAAUAGUAAUUAAUCGUU	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a132_TRINITY_DN3416_c0_g1_837_TPlot.pdf
TRINITY_DN3416_c0_g1:899	si_s378	TRINITY_DN3416_c0_g1	888	908	899	-43.80	-29.20	0.666666666666667	9.5	1-16,908-893	17-21,892-888[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGGUCGGUGGGUGCGCGGGCG&CGCUCGCGUGUCCGCCUUACA	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN3416_c0_g1_899_TPlot.pdf
TRINITY_DN3416_c0_g1:916	si_s375	TRINITY_DN3416_c0_g1	903	926	916	-44.10	-33.80	0.766439909297052	8.5	1-8,926-919;9-14,917-912;15-20,909-904	x-x,918-918[BULt];x-x,911-910[BULt];21-21,903-903[UP3]	.((((((..((((((.((((((((&))))))))-))))))--)))))).	CGGGCGGUAACGCGCGGGGCGGUC&GAUCGCUC-GCGUGU--CCGCCUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN3416_c0_g1_916_TPlot.pdf
TRINITY_DN34179_c0_g1:1782	si_s631	TRINITY_DN34179_c0_g1	1762	1791	1782	-36.00	-25.10	0.697222222222222	22.5	2-10,1790-1782;11-21,1772-1762	1-1,1791-1791[UP5];x-x,1781-1773[BULt]	(((((((((((.........(((((((((.&.)))))))))---------)))))))))))	GGCAAAUGCCUGGCAGUGAUAUGAGAGGAG&AUCUUUUCGU---------AGGCGUUUGCC	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN34179_c0_g1_1782_TPlot.pdf
TRINITY_DN34179_c0_g1:3246	si_a385	TRINITY_DN34179_c0_g1	3236	3255	3246	-24.80	-18.00	0.725806451612903	6.5	4-17,3252-3239;19-21,3238-3236	1-3,3255-3253[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	UCU-UGUUCUUAAUUCGACAG&AUUUCGAAUUAAGAAUAUAGA	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a385_TRINITY_DN34179_c0_g1_3246_TPlot.pdf
TRINITY_DN34179_c1_g2:2554	si_s73	TRINITY_DN34179_c1_g2	2542	2562	2554	-24.00	-16.10	0.670833333333333	7	1-3,2562-2560;5-15,2559-2549;16-21,2547-2542	4-4,x-x[BULq];x-x,2548-2548[BULt]	((((((.(((((((((((-(((&))).)))))))))))-))))))	GGAGGACAAGAAAGAGAA-GGA&UCUAUUUUUUUUCUU-UCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN34179_c1_g2_2554_TPlot.pdf
TRINITY_DN34179_c1_g2:455	si_a668	TRINITY_DN34179_c1_g2	441	463	455	-33.20	-22.02	0.663253012048193	9	1-4,463-460;6-14,459-451;17-21,445-441	5-5,x-x[BULq];15-16,450-446[AILt]	(((((.....(((((((((-((((&)))).)))))))))---..)))))	GUGGAGGCGUGGGAGUCAA-AGGC&GCCUAUUGAUUCCU---UAUUCAC	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN34179_c1_g2_455_TPlot.pdf
TRINITY_DN34179_c1_g2:493	si_a429	TRINITY_DN34179_c1_g2	482	502	493	-32.00	-21.10	0.659375	14.5	7-18,496-485	1-6,502-497[UP5];19-21,484-482[UP3]	...((((((((((((......&......))))))))))))...	GCCUCUAACGGAUCCGGUCCC&AAUAUAGGAUCCGUUGGAUAU	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN34179_c1_g2_493_TPlot.pdf
TRINITY_DN34179_c1_g3:2158	si_a790	TRINITY_DN34179_c1_g3	2147	2168	2158	-25.80	-17.50	0.678294573643411	9.5	1-7,2168-2162;8-17,2160-2151	x-x,2161-2161[BULt];18-21,2150-2147[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	CUGAGGAAGGUGGAUAAGAUAG&CUAUUUU-UCUAUUUUCCAAUC	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN34179_c1_g3_2158_TPlot.pdf
TRINITY_DN34179_c1_g3:2163	si_a786	TRINITY_DN34179_c1_g3	2151	2172	2163	-26.60	-19.50	0.733082706766917	7.5	3-11,2170-2162;12-21,2160-2151	1-2,2172-2171[UP5];x-x,2161-2161[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	GGAAGGUGGAUAAGAUAGAAUC&UCUUCUAUUUU-UCUAUUUUCC	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN34179_c1_g3_2163_TPlot.pdf
TRINITY_DN34179_c1_g3:882	si_s19	TRINITY_DN34179_c1_g3	871	891	882	-27.80	-18.30	0.658273381294964	7	2-4,890-888;7-12,885-880;14-20,878-872	1-1,891-891[UP5];5-6,887-886[SIL];13-13,879-879[SIL];21-21,871-871[UP3]	.(((((((.((((((..(((.&.)))..)))))).))))))).	GAGUUGCAUUCAAUAGCGUAU&UUACUAUAUUGAUUGCAACUA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN34179_c1_g3_882_TPlot.pdf
TRINITY_DN34179_c1_g3:883	si_s18	TRINITY_DN34179_c1_g3	872	892	883	-27.50	-17.90	0.650909090909091	8	3-5,890-888;8-13,885-880;15-21,878-872	1-2,892-891[UP5];6-7,887-886[SIL];14-14,879-879[SIL]	(((((((.((((((..(((..&..)))..)))))).)))))))	AGUUGCAUUCAAUAGCGUAUA&AUUACUAUAUUGAUUGCAACU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN34179_c1_g3_883_TPlot.pdf
TRINITY_DN34182_c0_g2:231	si_s77	TRINITY_DN34182_c0_g2	213	240	231	-25.50	-17.50	0.686274509803922	17.5	1-10,240-231;11-20,223-214	x-x,230-224[BULt];21-21,213-213[UP3]	.((((((((((.......((((((((((&))))))))))-------)))))))))).	AGAGAAAGGAGAUGCAACAGAAAAAGAA&UUUUUUUUCU-------UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN34182_c0_g2_231_TPlot.pdf
TRINITY_DN34182_c0_g2:233	si_s75	TRINITY_DN34182_c0_g2	215	242	233	-24.00	-16.20	0.675	18.5	3-12,240-231;13-21,223-215	1-2,242-241[UP5];x-x,230-224[BULt]	(((((((((.......((((((((((..&..))))))))))-------)))))))))	AGAAAGGAGAUGCAACAGAAAAAGAAAA&UAUUUUUUUUCU-------UUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN34182_c0_g2_233_TPlot.pdf
TRINITY_DN34189_c0_g1:28	si_a868	TRINITY_DN34189_c0_g1	19	37	28	-24.80	-16.40	0.661290322580645	6.5	2-10,36-28;13-20,27-20	1-1,37-37[UP5];11-12,x-x[BULq];21-21,19-19[UP3]	.((((((((--(((((((((.&.)))))))))..)))))))).	AGCAACUAG--CUUUAAUAAA&AUUAUUAAAGAUUUAGUUGCA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN34189_c0_g1_28_TPlot.pdf
TRINITY_DN3418_c1_g1:581	si_s487	TRINITY_DN3418_c1_g1	570	590	581	-18.40	-12.00	0.652173913043478	10	4-8,587-583;10-20,581-571	1-3,590-588[UP5];9-9,582-582[SIL];21-21,570-570[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	AGUUUAUAUUUAUGUAAGGUU&AUAUUUAUUUAAAUAUAAACA	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN3418_c1_g1_581_TPlot.pdf
TRINITY_DN34193_c0_g1:383	si_s76	TRINITY_DN34193_c0_g1	371	392	383	-23.60	-16.90	0.716101694915254	5.5	1-3,392-390;5-18,388-375;19-21,373-371	4-4,389-389[SIL];x-x,374-374[BULt]	(((.((((((((((((((.(((&))).))))))))))))))-)))	AAGUGGAGGGAAGAAAAAUGAU&AUUUUUUUUCUUUCCUUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN34193_c0_g1_383_TPlot.pdf
TRINITY_DN34193_c0_g1:386	si_s73	TRINITY_DN34193_c0_g1	375	395	386	-24.00	-17.50	0.729166666666667	7.5	3-6,393-390;8-21,388-375	1-2,395-394[UP5];7-7,389-389[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GGAGGGAAGAAAAAUGAUAAU&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999999278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN34193_c0_g1_386_TPlot.pdf
TRINITY_DN34193_c0_g1:496	si_a70	TRINITY_DN34193_c0_g1	482	505	496	-23.90	-18.80	0.786610878661088	6	1-13,505-493;14-21,489-482	x-x,492-490[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	AAUGGGGAAUGGCAAUUUGAAGGA&UCUUUCAAAUUGU---UUUUCAUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN34193_c0_g1_496_TPlot.pdf
TRINITY_DN34193_c0_g1:498	si_a68	TRINITY_DN34193_c0_g1	487	507	498	-25.40	-19.50	0.767716535433071	6	2-16,506-492;18-20,490-488	1-1,507-507[UP5];17-17,491-491[SIL];21-21,487-487[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	GGAAUGGCAAUUUGAAGGAGA&CUUCUUUCAAAUUGUUUUUCA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN34193_c0_g1_498_TPlot.pdf
TRINITY_DN341_c0_g1:566	si_s75	TRINITY_DN341_c0_g1	555	575	566	-24.00	-16.30	0.679166666666667	6	3-14,573-562;16-21,560-555	1-2,575-574[UP5];15-15,561-561[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAAGAGGAGAAAGAAAAGU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN341_c0_g1_566_TPlot.pdf
TRINITY_DN341_c0_g1:635	si_s78	TRINITY_DN341_c0_g1	622	644	635	-26.20	-17.08	0.651908396946565	8	3-14,642-631;17-20,626-623	1-2,644-643[UP5];15-16,630-627[AILt];21-21,622-622[UP3]	.((((....((((((((((((..&..))))))))))))--..)))).	UGAAGCUCUAGGAAAGAAAAAUU&UUUUUUUCUUUCCU--UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN341_c0_g1_635_TPlot.pdf
TRINITY_DN34206_c1_g1:261	si_a131	TRINITY_DN34206_c1_g1	251	270	261	-27.00	-18.32	0.678518518518519	7	1-11,270-260;16-20,256-252	12-15,259-257[AILq];21-21,251-251[UP3]	.(((((...-(((((((((((&)))))))))))....))))).	UCGAUUUUG-ACUAUUGCUGU&AUAGCAAUAGUAAUUAAUCGU	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a131_TRINITY_DN34206_c1_g1_261_TPlot.pdf
TRINITY_DN3420_c0_g1:2085	si_s487	TRINITY_DN3420_c0_g1	2074	2094	2085	-18.40	-12.30	0.668478260869565	6.5	1-8,2094-2087;10-19,2085-2076	9-9,2086-2086[SIL];20-21,2075-2074[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UUUUUGUAUUUAUGUAGAUAU&AUAUUUAUUUAAAUAUAAACA	2	0.978631982609921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN3420_c0_g1_2085_TPlot.pdf
TRINITY_DN3420_c1_g1:5060	si_s76	TRINITY_DN3420_c1_g1	5045	5069	5060	-23.60	-15.76	0.667796610169491	10.5	2-15,5068-5055;18-21,5048-5045	1-1,5069-5069[UP5];16-17,5054-5049[AILt]	((((......((((((((((((((.&.))))))))))))))----..))))	GAGACGUUAUGGAAGGAAGAGAAAA&AUUUUUUUUCUUUCC----UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3420_c1_g1_5060_TPlot.pdf
TRINITY_DN3420_c1_g1:5555	si_a836	TRINITY_DN3420_c1_g1	5544	5564	5555	-24.10	-17.30	0.717842323651452	3	1-11,5564-5554;13-13,5552-5552;15-21,5550-5544	12-12,5553-5553[SIL];14-14,5551-5551[SIL]	(((((((.(.(((((((((((&))))))))))).).)))))))	UUAGCAAGUACUAUUUUUUUU&AAAAAAAAUAGAAGUUGCUAA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN3420_c1_g1_5555_TPlot.pdf
TRINITY_DN3421_c0_g1:1270	si_a496	TRINITY_DN3421_c0_g1	1257	1279	1270	-32.40	-21.76	0.671604938271605	11.5	1-10,1279-1270;14-21,1264-1257	11-13,1269-1265[AILt]	((((((((.....((((((((((&))))))))))--...))))))))	AGGAAGAUAAUAUAGACGACGUA&UAUGUCGUUU--UUCGUCUUCCU	4	0.99999999962935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3421_c0_g1_1270_TPlot.pdf
TRINITY_DN3421_c0_g1:1332	si_a410	TRINITY_DN3421_c0_g1	1321	1341	1332	-17.80	-11.60	0.651685393258427	7	2-14,1340-1328;16-18,1326-1324	1-1,1341-1341[UP5];15-15,1327-1327[SIL];19-21,1323-1321[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	UAAAUUGGGAUAUAAACAGAG&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3421_c0_g1_1332_TPlot.pdf
TRINITY_DN3421_c0_g1:3205	si_s312	TRINITY_DN3421_c0_g1	3194	3214	3205	-29.00	-19.40	0.668965517241379	15.5	8-19,3207-3196	1-7,3214-3208[UP5];20-21,3195-3194[UP3]	..((((((((((((.......&.......))))))))))))..	UUGCAAGAAGGACAAACGAGG&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999871404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3421_c0_g1_3205_TPlot.pdf
TRINITY_DN3421_c0_g1:3351	si_s80	TRINITY_DN3421_c0_g1	3340	3360	3351	-28.20	-18.80	0.666666666666667	7.5	2-14,3359-3347;17-20,3344-3341	1-1,3360-3360[UP5];15-16,3346-3345[SIL];21-21,3340-3340[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	AAAGAUUGAGGGAAAGAGAGG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3421_c0_g1_3351_TPlot.pdf
TRINITY_DN3421_c0_g1:3352	si_s79	TRINITY_DN3421_c0_g1	3341	3361	3352	-26.20	-20.40	0.778625954198473	6	1-15,3361-3347;18-21,3344-3341	16-17,3346-3345[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	AAGAUUGAGGGAAAGAGAGGA&UUUUUUCUUUCCUUUCUUCUU	3	0.999999964960652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3421_c0_g1_3352_TPlot.pdf
TRINITY_DN3421_c0_g1:3354	si_s77	TRINITY_DN3421_c0_g1	3343	3363	3354	-25.50	-18.60	0.729411764705882	8	2-17,3362-3347;20-21,3344-3343	1-1,3363-3363[UP5];18-19,3346-3345[SIL]	((..((((((((((((((((.&.))))))))))))))))..))	GAUUGAGGGAAAGAGAGGAGU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3421_c0_g1_3354_TPlot.pdf
TRINITY_DN3421_c0_g1:3359	si_s72	TRINITY_DN3421_c0_g1	3348	3371	3359	-24.10	-19.40	0.804979253112033	12.5	1-6,3371-3366;7-21,3362-3348	x-x,3365-3363[BULt]	(((((((((((((((...((((((&))))))---)))))))))))))))	AGGGAAAGAGAGGAGUCGGUAGGA&UUCUAU---UUUUUUUCUUUCCUU	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3421_c0_g1_3359_TPlot.pdf
TRINITY_DN3421_c0_g1:3360	si_s71	TRINITY_DN3421_c0_g1	3349	3372	3360	-25.70	-18.80	0.731517509727627	13	2-7,3371-3366;8-21,3362-3349	1-1,3372-3372[UP5];x-x,3365-3363[BULt]	((((((((((((((...((((((.&.))))))---))))))))))))))	GGGAAAGAGAGGAGUCGGUAGGAA&CUUCUAU---UUUUUUUCUUUCCU	4	0.999999998822403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3421_c0_g1_3360_TPlot.pdf
TRINITY_DN3421_c0_g1:3364	si_a666	TRINITY_DN3421_c0_g1	3353	3373	3364	-31.60	-21.20	0.670886075949367	12.5	4-17,3370-3357	1-3,3373-3371[UP5];18-21,3356-3353[UP3]	....((((((((((((((...&...))))))))))))))....	AAGAGAGGAGUCGGUAGGAAG&AUGCCUAUUGAUUCCUUAUUC	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN3421_c0_g1_3364_TPlot.pdf
TRINITY_DN3421_c0_g1:3365	si_a665	TRINITY_DN3421_c0_g1	3354	3374	3365	-29.60	-21.20	0.716216216216216	13	5-18,3370-3357	1-4,3374-3371[UP5];19-21,3356-3354[UP3]	...((((((((((((((....&....))))))))))))))...	AGAGAGGAGUCGGUAGGAAGA&AAUGCCUAUUGAUUCCUUAUU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN3421_c0_g1_3365_TPlot.pdf
TRINITY_DN3421_c0_g1:3369	si_s76	TRINITY_DN3421_c0_g1	3353	3378	3369	-23.60	-18.70	0.792372881355932	14.5	1-11,3378-3368;12-21,3362-3353	x-x,3367-3363[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	AAGAGAGGAGUCGGUAGGAAGAAGAU&AUUUUUUUUCU-----UUCCUUUCUU	3	0.99999997413699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3421_c0_g1_3369_TPlot.pdf
TRINITY_DN3421_c0_g1:3370	si_s75	TRINITY_DN3421_c0_g1	3354	3379	3370	-24.00	-18.60	0.775	14.5	1-12,3379-3368;13-21,3362-3354	x-x,3367-3363[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	AGAGAGGAGUCGGUAGGAAGAAGAUG&UAUUUUUUUUCU-----UUCCUUUCU	3	0.999999783320533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3421_c0_g1_3370_TPlot.pdf
TRINITY_DN3421_c0_g1:3460	si_a329	TRINITY_DN3421_c0_g1	3446	3469	3460	-29.60	-19.50	0.658783783783784	10	1-10,3469-3460;11-17,3456-3450;19-21,3448-3446	x-x,3459-3457[BULt];18-18,3449-3449[SIL]	(((.(((((((...((((((((((&))))))))))---))))))).)))	CGGAACAAGGAAGAGUGGAAAAAU&AUUUUUUUAU---UCCUUGUCCCG	4	0.99999999585186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3421_c0_g1_3460_TPlot.pdf
TRINITY_DN34221_c0_g1:474	si_a767	TRINITY_DN34221_c0_g1	461	483	474	-30.10	-19.60	0.651162790697674	8	1-10,483-474;12-14,472-470;15-20,467-462	11-11,473-473[SIL];x-x,469-468[BULt];21-21,461-461[UP3]	.((((((..(((.((((((((((&)))))))))).)))--)))))).	CAGUUGGCCGUCUGUCAGAAACC&GGUUUUUGAUUGAU--UCAACUC	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN34221_c0_g1_474_TPlot.pdf
TRINITY_DN34221_c0_g1:680	si_a556	TRINITY_DN34221_c0_g1	669	689	680	-33.40	-22.06	0.660479041916168	11	2-5,688-685;10-19,680-671	1-1,689-689[UP5];6-9,684-681[SIL];20-21,670-669[UP3]	..((((((((((....((((.&.))))....))))))))))..	CGCACGGGGAGACACCGAAAG&AUUUCUUUAUCUCCCCGUGAA	4	0.999639012009468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN34221_c0_g1_680_TPlot.pdf
TRINITY_DN34228_c0_g1:110	si_a783	TRINITY_DN34228_c0_g1	98	119	110	-24.70	-16.10	0.651821862348178	9	4-12,116-108;13-21,106-98	1-3,119-117[UP5];x-x,107-107[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GGAUAGGGAUAAUAGAAGAUAG&AACUCUUCUAUU-UUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN34228_c0_g1_110_TPlot.pdf
TRINITY_DN34228_c0_g1:96	si_a196	TRINITY_DN34228_c0_g1	85	106	96	-32.80	-21.40	0.652439024390244	7	1-9,106-98;11-13,95-93;15-21,91-85	10-10,97-96[AILt];14-14,92-92[SIL]	(((((((.(((..(((((((((&)))))))))-.))).)))))))	CGAUUUAAUAGAAGGAUAGGGA&UCCCUGUUC-ACUAAUAAAUCG	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a196_TRINITY_DN34228_c0_g1_96_TPlot.pdf
TRINITY_DN3423_c0_g1:1179	si_s197	TRINITY_DN3423_c0_g1	1169	1188	1179	-29.20	-19.80	0.678082191780822	7.5	1-14,1188-1175;16-18,1174-1172	15-15,x-x[BULq];19-21,1171-1169[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	UUAUGG-ACAUUCCAGAGUGG&UUAUUUUGGAAUGUACCAGUU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN3423_c0_g1_1179_TPlot.pdf
TRINITY_DN3423_c0_g1:1182	si_s194	TRINITY_DN3423_c0_g1	1172	1191	1182	-30.30	-24.70	0.815181518151815	6	2-17,1190-1175;19-21,1174-1172	1-1,1191-1191[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	UGG-ACAUUCCAGAGUGGUCU&CGAUUAUUUUGGAAUGUACCA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN3423_c0_g1_1182_TPlot.pdf
TRINITY_DN3423_c0_g1:1647	si_a883	TRINITY_DN3423_c0_g1	1636	1657	1647	-27.20	-19.20	0.705882352941177	9	1-6,1657-1652;7-19,1650-1638	x-x,1651-1651[BULt];20-21,1637-1636[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	CCUUACUAUGUUGGUGUGUGGC&GUUGCA-AUCAAUAUAGUAAUA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN3423_c0_g1_1647_TPlot.pdf
TRINITY_DN3423_c0_g1:1648	si_a882	TRINITY_DN3423_c0_g1	1637	1658	1648	-27.50	-19.30	0.701818181818182	8.5	2-7,1657-1652;8-20,1650-1638	1-1,1658-1658[UP5];x-x,1651-1651[BULt];21-21,1637-1637[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CUUACUAUGUUGGUGUGUGGCA&AGUUGCA-AUCAAUAUAGUAAU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a882_TRINITY_DN3423_c0_g1_1648_TPlot.pdf
TRINITY_DN3423_c0_g1:1649	si_a881	TRINITY_DN3423_c0_g1	1638	1659	1649	-27.80	-19.20	0.690647482014388	9.5	3-8,1657-1652;9-21,1650-1638	1-2,1659-1658[UP5];x-x,1651-1651[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UUACUAUGUUGGUGUGUGGCAG&UAGUUGCA-AUCAAUAUAGUAA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN3423_c0_g1_1649_TPlot.pdf
TRINITY_DN3423_c0_g1:1650	si_a880	TRINITY_DN3423_c0_g1	1639	1660	1650	-27.80	-18.30	0.658273381294964	11.5	4-9,1657-1652;10-21,1650-1639	1-3,1660-1658[UP5];x-x,1651-1651[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	UACUAUGUUGGUGUGUGGCAGG&UUAGUUGCA-AUCAAUAUAGUA	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN3423_c0_g1_1650_TPlot.pdf
TRINITY_DN34243_c1_g2:181	si_s69	TRINITY_DN34243_c1_g2	170	189	181	-23.40	-15.50	0.662393162393162	6.5	2-7,188-183;9-19,182-172	1-1,189-189[UP5];8-8,x-x[BULq];20-21,171-170[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	UUGAGAAAAAAAG-AGAAGUG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN34243_c1_g2_181_TPlot.pdf
TRINITY_DN34248_c0_g2:567	si_a149	TRINITY_DN34248_c0_g2	554	576	567	-29.40	-21.96	0.746938775510204	13	1-11,576-566;15-20,560-555	12-14,565-561[AILt];21-21,554-554[UP3]	.((((((.....(((((((((((&)))))))))))--...)))))).	UUUGACCGAGUUGAGCAGCGACG&CGUUGUUGUUU--UAAGGUCAAU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN34248_c0_g2_567_TPlot.pdf
TRINITY_DN3425_c0_g1:1407	si_a318	TRINITY_DN3425_c0_g1	1396	1416	1407	-22.50	-15.60	0.693333333333333	7.5	2-12,1415-1405;14-17,1403-1400	1-1,1416-1416[UP5];13-13,1404-1404[SIL];18-21,1399-1396[UP3]	....((((.(((((((((((.&.))))))))))).))))....	CAACAGAAUUCAUGGAUGAAG&AUUUAUCCAUGAUUUUUUUAU	4	0.999999967983427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3425_c0_g1_1407_TPlot.pdf
TRINITY_DN3425_c0_g1:1412	si_a313	TRINITY_DN3425_c0_g1	1401	1422	1412	-28.70	-19.40	0.67595818815331	8.5	1-5,1422-1418;7-17,1415-1405;19-21,1403-1401	6-6,1417-1416[AILt];18-18,1404-1404[SIL]	(((.(((((((((((..(((((&)))))-.))))))))))).)))	GAAUUCAUGGAUGAAGAUCAGG&CUUGG-AUUUAUCCAUGAUUUU	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN3425_c0_g1_1412_TPlot.pdf
TRINITY_DN3425_c0_g1:1500	si_a68	TRINITY_DN3425_c0_g1	1489	1509	1500	-25.40	-18.70	0.736220472440945	6.5	1-13,1509-1497;15-17,1495-1493;19-20,1491-1490	14-14,1496-1496[SIL];18-18,1492-1492[SIL];21-21,1489-1489[UP3]	.((.(((.(((((((((((((&))))))))))))).))).)).	CGACGGAGGAUUUGGAGGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3425_c0_g1_1500_TPlot.pdf
TRINITY_DN3425_c0_g1:1635	si_s69	TRINITY_DN3425_c0_g1	1624	1644	1635	-23.40	-15.40	0.658119658119658	8	3-8,1642-1637;10-14,1635-1631;17-21,1628-1624	1-2,1644-1643[UP5];9-9,1636-1636[SIL];15-16,1630-1629[SIL]	(((((..(((((.((((((..&..)))))).)))))..)))))	GAGAGUUAGAAAUUAGAAGAC&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3425_c0_g1_1635_TPlot.pdf
TRINITY_DN34267_c0_g1:453	si_a18	TRINITY_DN34267_c0_g1	442	463	453	-26.30	-17.10	0.650190114068441	12	1-5,463-459;10-21,453-442	6-9,458-454[AILt]	((((((((((((.....(((((&)))))-....))))))))))))	GAAUUGAAAGUAUCACUGGCUU&AAGCC-UAUUUAUUUUUAGUUC	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN34267_c0_g1_453_TPlot.pdf
TRINITY_DN34286_c0_g1:347	si_s677	TRINITY_DN34286_c0_g1	336	356	347	-27.10	-19.50	0.719557195571956	6	1-9,356-348;11-20,346-337	10-10,347-347[SIL];21-21,336-336[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AGAACUUAUGUCUUUGUAAUC&GAUUAUAGAAACAUGAGUUUA	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s677_TRINITY_DN34286_c0_g1_347_TPlot.pdf
TRINITY_DN3428_c0_g1:324	si_a405	TRINITY_DN3428_c0_g1	313	333	324	-19.80	-14.40	0.727272727272727	11	2-17,332-317	1-1,333-333[UP5];18-21,316-313[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAUUGUGUAGAUAAGGCAGUA&AAUUGUUUUGUUUAUAUUUAA	3	0.999999936974234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3428_c0_g1_324_TPlot.pdf
TRINITY_DN3428_c0_g1:326	si_a403	TRINITY_DN3428_c0_g1	315	335	326	-22.00	-14.40	0.654545454545455	12.5	4-19,332-317	1-3,335-333[UP5];20-21,316-315[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGUGUAGAUAAGGCAGUAAG&AGAAUUGUUUUGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3428_c0_g1_326_TPlot.pdf
TRINITY_DN3428_c0_g1:570	si_a245	TRINITY_DN3428_c0_g1	553	579	570	-37.20	-24.20	0.650537634408602	18	3-11,577-569;12-21,562-553	1-2,579-578[UP5];x-x,568-563[BULt]	((((((((((......(((((((((..&..)))))))))------))))))))))	GGUGCAGUUGCAGGUUGGGGAUUGACU&AUUCGAUCCCC------CGAUUGUAUC	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a245_TRINITY_DN3428_c0_g1_570_TPlot.pdf
TRINITY_DN3428_c0_g1:759	si_s162	TRINITY_DN3428_c0_g1	747	768	759	-40.10	-27.80	0.693266832917706	10.5	1-6,768-763;8-12,761-757;13-16,755-752	7-7,762-762[SIL];x-x,756-756[BULt];17-21,751-747[UP3]	.....((((.(((((.((((((&)))))).)))))-)))).....	AGGUGGCCCUCUGGCGGUGAAC&GUUCAUGGCCAG-GGGUAAAGA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN3428_c0_g1_759_TPlot.pdf
TRINITY_DN3428_c0_g1:760	si_s161	TRINITY_DN3428_c0_g1	748	769	760	-41.50	-28.00	0.674698795180723	9.5	2-7,768-763;9-13,761-757;14-17,755-752	1-1,769-769[UP5];8-8,762-762[SIL];x-x,756-756[BULt];18-21,751-748[UP3]	....((((.(((((.((((((.&.)))))).)))))-))))....	GGUGGCCCUCUGGCGGUGAACG&GGUUCAUGGCCAG-GGGUAAAG	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN3428_c0_g1_760_TPlot.pdf
TRINITY_DN3428_c0_g1:762	si_s159	TRINITY_DN3428_c0_g1	750	771	762	-42.60	-28.00	0.657276995305164	11.5	4-9,768-763;11-15,761-757;16-19,755-752	1-3,771-769[UP5];10-10,762-762[SIL];x-x,756-756[BULt];20-21,751-750[UP3]	..((((.(((((.((((((...&...)))))).)))))-))))..	UGGCCCUCUGGCGGUGAACGGU&GAGGUUCAUGGCCAG-GGGUAA	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN3428_c0_g1_762_TPlot.pdf
TRINITY_DN3429_c0_g1:3176	si_s629	TRINITY_DN3429_c0_g1	3163	3185	3176	-34.60	-22.50	0.65028901734104	10	1-10,3185-3176;12-12,3174-3174;14-16,3171-3169;17-21,3167-3163	11-11,3175-3175[SIL];13-13,3173-3172[AILt];x-x,3168-3168[BULt]	(((((.(((..(.((((((((((&)))))))))).)-.)))-)))))	CGAGCGGCCGAAGGGGGAGAUCG&CGAUCUUUUCGU-AGGC-GUUUG	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3429_c0_g1_3176_TPlot.pdf
TRINITY_DN3429_c0_g1:3182	si_a321	TRINITY_DN3429_c0_g1	3171	3191	3182	-26.70	-17.50	0.655430711610487	9	3-16,3189-3176;18-20,3174-3172	1-2,3191-3190[UP5];17-17,3175-3175[SIL];21-21,3171-3171[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	CGAAGGGGGAGAUCGUGGAGC&UAUCCAUGAUUUUUUUAUUCC	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3429_c0_g1_3182_TPlot.pdf
TRINITY_DN3429_c0_g1:3274	si_s94	TRINITY_DN3429_c0_g1	3260	3283	3274	-35.50	-25.90	0.729577464788732	5	1-11,3283-3273;12-16,3271-3267;17-21,3264-3260	x-x,3272-3272[BULt];x-x,3266-3265[BULt]	(((((..(((((.(((((((((((&)))))))))))-)))))--)))))	CAGUCAGUGAAGACGAAGAAGAAG&CUUCUUCUUCG-CUUCG--GAUUG	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN3429_c0_g1_3274_TPlot.pdf
TRINITY_DN3429_c0_g1:4982	si_s39	TRINITY_DN3429_c0_g1	4971	4991	4982	-22.30	-14.80	0.663677130044843	12.5	5-17,4987-4975	1-4,4991-4988[UP5];18-21,4974-4971[UP3]	....(((((((((((((....&....)))))))))))))....	CCAGCCAGUUAUUGAAGUGCU&AAAUCUUUAAUAAUUGGAUUU	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN3429_c0_g1_4982_TPlot.pdf
TRINITY_DN3429_c0_g1:5949	si_s634	TRINITY_DN3429_c0_g1	5941	5958	5949	-38.30	-24.90	0.650130548302872	7.5	2-13,5957-5946;17-20,5945-5942	1-1,5958-5958[UP5];14-16,x-x[BULq];21-21,5941-5941[UP3]	.((((---((((((((((((.&.))))))))))))...)))).	AAGGG---GCGCCUGCGGAAG&UUUUCGUAGGCGUUUGCCCUC	4	0.999998131673448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN3429_c0_g1_5949_TPlot.pdf
TRINITY_DN3429_c0_g1:5950	si_s633	TRINITY_DN3429_c0_g1	5942	5959	5950	-37.90	-25.50	0.672823218997362	7.5	2-14,5958-5946;18-21,5945-5942	1-1,5959-5959[UP5];15-17,x-x[BULq]	((((---(((((((((((((.&.)))))))))))))...))))	AGGG---GCGCCUGCGGAAGA&CUUUUCGUAGGCGUUUGCCCU	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN3429_c0_g1_5950_TPlot.pdf
TRINITY_DN3429_c0_g1:5954	si_s629	TRINITY_DN3429_c0_g1	5943	5962	5954	-34.60	-23.70	0.684971098265896	8.5	2-8,5961-5955;10-20,5954-5944	1-1,5962-5962[UP5];9-9,x-x[BULq];21-21,5943-5943[UP3]	.(((((((((((-(((((((.&.))))))).))))))))))).	GGGGCGCCUGCG-GAAGAUUU&CGAUCUUUUCGUAGGCGUUUG	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3429_c0_g1_5954_TPlot.pdf
TRINITY_DN3429_c0_g1:5956	si_s626	TRINITY_DN3429_c0_g1	5946	5965	5956	-36.10	-23.60	0.653739612188366	8	2-3,5964-5963;5-11,5961-5955;13-21,5954-5946	1-1,5965-5965[UP5];4-4,5962-5962[SIL];12-12,x-x[BULq]	(((((((((-(((((((.((.&.)).))))))).)))))))))	GCGCCUGCG-GAAGAUUUCUC&AAGCGAUCUUUUCGUAGGCGU	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3429_c0_g1_5956_TPlot.pdf
TRINITY_DN3429_c0_g1:6031	si_a142	TRINITY_DN3429_c0_g1	6020	6040	6031	-23.50	-15.30	0.651063829787234	12	4-6,6037-6035;8-19,6033-6022	1-3,6040-6038[UP5];7-7,6034-6034[SIL];20-21,6021-6020[UP3]	..((((((((((((.(((...&...))).))))))))))))..	CCGAAGCAACGACGUUUGCAU&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999998065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3429_c0_g1_6031_TPlot.pdf
TRINITY_DN3429_c0_g1:6289	si_s858	TRINITY_DN3429_c0_g1	6278	6304	6289	-43.30	-29.40	0.678983833718245	15	1-5,6304-6300;6-7,6298-6297;8-18,6291-6281;20-21,6279-6278	x-x,6299-6299[BULt];x-x,6296-6292[BULt];19-19,6280-6280[SIL]	((.(((((((((((.....((.(((((&)))))-))-----))))))))))).))	GGGCGGUGGGUCUGCUGCCGGAAGUCG&CGACU-CC-----UAGACCUACCGGUC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s858_TRINITY_DN3429_c0_g1_6289_TPlot.pdf
TRINITY_DN3429_c0_g1:6291	si_s856	TRINITY_DN3429_c0_g1	6280	6306	6291	-43.30	-29.90	0.690531177829099	15	1-7,6306-6300;8-9,6298-6297;10-20,6291-6281	x-x,6299-6299[BULt];x-x,6296-6292[BULt];21-21,6280-6280[UP3]	.(((((((((((.....((.(((((((&)))))))-))-----))))))))))).	GCGGUGGGUCUGCUGCCGGAAGUCGAU&GUCGACU-CC-----UAGACCUACCGG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s856_TRINITY_DN3429_c0_g1_6291_TPlot.pdf
TRINITY_DN342_c0_g1:1187	si_a676	TRINITY_DN342_c0_g1	1170	1196	1187	-34.00	-22.40	0.658823529411765	14	1-11,1196-1186;12-13,1180-1179;14-21,1177-1170	x-x,1185-1181[BULt];x-x,1178-1178[BULt]	((((((((.((.....(((((((((((&)))))))))))-----))-))))))))	GAGACUGCAGUGGAACGAAUAAGGGGU&AUUCCUUAUUC-----AC-GCGGUUUC	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN342_c0_g1_1187_TPlot.pdf
TRINITY_DN3430_c0_g1:1119	si_s797	TRINITY_DN3430_c0_g1	1108	1128	1119	-30.00	-19.54	0.651333333333333	12.5	1-7,1128-1122;13-20,1116-1109	8-12,1121-1117[SIL];21-21,1108-1108[UP3]	.((((((((.....(((((((&))))))).....)))))))).	AGGCGAAGGCUUUCUACGAGC&GCUCGUAUUUUAUCUUCGUUA	4	0.999999999534866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3430_c0_g1_1119_TPlot.pdf
TRINITY_DN3430_c0_g1:13934	si_a118	TRINITY_DN3430_c0_g1	13924	13943	13934	-30.70	-21.50	0.700325732899023	8	2-13,13942-13931;16-19,13929-13926	1-1,13943-13943[UP5];14-15,13930-13930[AILq];20-21,13925-13924[UP3]	..((((.-((((((((((((.&.))))))))))))..))))..	ACUGCUC-AGAGCGAGCUCGA&ACGAGCUUGUUUUAUAGCAAU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN3430_c0_g1_13934_TPlot.pdf
TRINITY_DN3430_c0_g1:1485	si_a762	TRINITY_DN3430_c0_g1	1465	1494	1485	-29.70	-20.30	0.683501683501683	21.5	1-4,1494-1491;6-11,1489-1484;12-21,1474-1465	5-5,1490-1490[SIL];x-x,1483-1475[BULt]	((((((((((.........((((((.((((&)))).))))))---------))))))))))	GAGUCAAUCAGCUACAAAAGAAACCGAAAG&CUUUGGGUUUU---------UGAUUGAUUC	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN3430_c0_g1_1485_TPlot.pdf
TRINITY_DN3430_c0_g1:16665	si_s94	TRINITY_DN3430_c0_g1	16654	16673	16665	-35.50	-23.20	0.653521126760563	10	2-8,16672-16666;11-20,16664-16655	1-1,16673-16673[UP5];9-10,16665-16665[AILq];21-21,16654-16654[UP3]	.((((((((((.-(((((((.&.)))))))..)))))))))).	AGAUCCGAGGCU-GGAGGGAA&CUUCUUCUUCGCUUCGGAUUG	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN3430_c0_g1_16665_TPlot.pdf
TRINITY_DN3430_c0_g1:16666	si_s93	TRINITY_DN3430_c0_g1	16655	16674	16666	-34.80	-23.20	0.666666666666667	11	3-9,16672-16666;12-21,16664-16655	1-2,16674-16673[UP5];10-11,16665-16665[AILq]	((((((((((.-(((((((..&..)))))))..))))))))))	GAUCCGAGGCU-GGAGGGAAC&UCUUCUUCUUCGCUUCGGAUU	4	0.99999999998457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3430_c0_g1_16666_TPlot.pdf
TRINITY_DN3430_c0_g1:5965	si_a760	TRINITY_DN3430_c0_g1	5954	5972	5965	-31.10	-20.80	0.668810289389068	9.5	1-5,5972-5968;8-20,5967-5955	6-7,x-x[BULq];21-21,5954-5954[UP3]	.(((((((((((((--(((((&)))))..))))))))))))).	CUCGGUCAGAGACC--GGGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN3430_c0_g1_5965_TPlot.pdf
TRINITY_DN3433_c0_g1:1670	si_s896	TRINITY_DN3433_c0_g1	1660	1679	1670	-31.60	-22.00	0.69620253164557	9	3-14,1677-1666;17-20,1664-1661	1-2,1679-1678[UP5];15-16,1665-1665[AILq];21-21,1660-1660[UP3]	.((((.-((((((((((((..&..))))))))))))..)))).	CGGAGA-GAGGAGAAGGCCGA&UAGGCUUUCUCUUCAAUUUCA	4	0.994930149310453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3433_c0_g1_1670_TPlot.pdf
TRINITY_DN3433_c0_g1:1832	si_s71	TRINITY_DN3433_c0_g1	1820	1841	1832	-25.70	-17.10	0.665369649805448	9.5	1-4,1841-1838;6-16,1836-1826;18-21,1823-1820	5-5,1837-1837[SIL];17-17,1825-1824[AILt]	((((..(((((((((((.((((&)))).)))))))))))-.))))	AGGAUCAGAGAGAGAGUCGGGG&CUUCUAUUUUUUUUCU-UUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3433_c0_g1_1832_TPlot.pdf
TRINITY_DN34344_c0_g1:208	si_a812	TRINITY_DN34344_c0_g1	197	216	208	-34.80	-22.90	0.658045977011494	6	1-5,216-212;8-20,210-198	6-7,211-211[AILq];21-21,197-197[UP3]	.(((((((((((((.-(((((&)))))..))))))))))))).	ACUUUUCUUCUUCUG-GCUUU&GAAGCGAAGAAGAAGAAAGGA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN34344_c0_g1_208_TPlot.pdf
TRINITY_DN34347_c0_g1:83	si_s224	TRINITY_DN34347_c0_g1	71	92	83	-34.00	-22.10	0.65	9.5	1-11,92-82;13-17,79-75	12-12,81-80[AILt];18-21,74-71[UP3]	....(((((..(((((((((((&)))))))))))-.)))))....	UGAUCUUGUGCCAUGCGGUUUC&GAAACCGCGUG-AAUAAGGAAU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s224_TRINITY_DN34347_c0_g1_83_TPlot.pdf
TRINITY_DN3434_c0_g1:1422	si_s1	TRINITY_DN3434_c0_g1	1412	1431	1422	-18.70	-13.60	0.727272727272727	5	2-10,1430-1422;12-20,1421-1413	1-1,1431-1431[UP5];11-11,x-x[BULq];21-21,1412-1412[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	AAAUAAUAAG-AAUAUAAGAG&UUUUUAUAUUACUUAUUAUUA	4	0.999356558738347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN3434_c0_g1_1422_TPlot.pdf
TRINITY_DN3435_c0_g1:3284	si_a790	TRINITY_DN3435_c0_g1	3273	3294	3284	-25.80	-17.40	0.674418604651163	8.5	1-9,3294-3286;10-17,3284-3277	x-x,3285-3285[BULt];18-21,3276-3273[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	UUUCGGAGAAUACGGAAAAUGG&CUAUUUUUC-UAUUUUCCAAUC	2	0.999435819007082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN3435_c0_g1_3284_TPlot.pdf
TRINITY_DN3435_c0_g1:3523	si_a19	TRINITY_DN3435_c0_g1	3512	3530	3523	-27.00	-17.70	0.655555555555556	5.5	1-5,3530-3526;8-20,3525-3513	6-7,x-x[BULq];21-21,3512-3512[UP3]	.(((((((((((((--(((((&)))))..))))))))))))).	UGAAUUAAAAAUAA--AGGCU&AGCCUAUUUAUUUUUAGUUCU	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN3435_c0_g1_3523_TPlot.pdf
TRINITY_DN34363_c0_g1:1341	si_a311	TRINITY_DN34363_c0_g1	1330	1350	1341	-32.70	-21.30	0.651376146788991	8	2-12,1349-1339;14-20,1337-1331	1-1,1350-1350[UP5];13-13,1338-1338[SIL];21-21,1330-1330[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	CAUUGUGGUUGGAUCCGAGUA&CGCUUGGAUUUAUCCAUGAUU	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN34363_c0_g1_1341_TPlot.pdf
TRINITY_DN34363_c0_g1:1391	si_a79	TRINITY_DN34363_c0_g1	1380	1400	1391	-22.20	-14.90	0.671171171171171	10.5	1-16,1400-1385	17-21,1384-1380[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAGUAUGAUGAUGGGGGACAA&UUGUUUUUCAUUAUUAAGAAA	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN34363_c0_g1_1391_TPlot.pdf
TRINITY_DN34363_c0_g1:1392	si_a78	TRINITY_DN34363_c0_g1	1381	1401	1392	-22.30	-14.90	0.668161434977579	10	2-17,1400-1385	1-1,1401-1401[UP5];18-21,1384-1381[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGUAUGAUGAUGGGGGACAAG&AUUGUUUUUCAUUAUUAAGAA	3	0.999999815717802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN34363_c0_g1_1392_TPlot.pdf
TRINITY_DN34363_c0_g1:1394	si_a76	TRINITY_DN34363_c0_g1	1383	1403	1394	-21.20	-14.90	0.702830188679245	12	4-19,1400-1385	1-3,1403-1401[UP5];20-21,1384-1383[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAUGAUGAUGGGGGACAAGCU&AAAUUGUUUUUCAUUAUUAAG	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN34363_c0_g1_1394_TPlot.pdf
TRINITY_DN34363_c0_g1:1396	si_a74	TRINITY_DN34363_c0_g1	1385	1405	1396	-22.20	-17.80	0.801801801801802	8.5	1-3,1405-1403;6-21,1400-1385	4-5,1402-1401[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	UGAUGAUGGGGGACAAGCUGA&UCAAAUUGUUUUUCAUUAUUA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN34363_c0_g1_1396_TPlot.pdf
TRINITY_DN34363_c0_g1:1399	si_a71	TRINITY_DN34363_c0_g1	1388	1408	1399	-23.30	-18.40	0.789699570815451	8.5	1-6,1408-1403;9-21,1400-1388	7-8,1402-1401[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UGAUGGGGGACAAGCUGAGGG&CUUUCAAAUUGUUUUUCAUUA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN34363_c0_g1_1399_TPlot.pdf
TRINITY_DN34366_c0_g1:1182	si_s800	TRINITY_DN34366_c0_g1	1164	1191	1182	-29.70	-20.30	0.683501683501683	17.5	1-12,1191-1180;13-18,1173-1168;19-20,1166-1165	x-x,1179-1174[BULt];x-x,1167-1167[BULt];21-21,1164-1164[UP3]	.((.((((((......((((((((((((&))))))))))))------))))))-)).	CGGCUGACGAUAAGCGGGAUAGGAUACG&CGUAUUUUAUCU------UCGUUA-CCU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN34366_c0_g1_1182_TPlot.pdf
TRINITY_DN3436_c0_g1:1338	si_s88	TRINITY_DN3436_c0_g1	1326	1347	1338	-34.80	-22.80	0.655172413793104	9.5	3-10,1345-1338;11-19,1336-1328	1-2,1347-1346[UP5];x-x,1337-1337[BULt];20-21,1327-1326[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	UUGGCGAAGAACGGAGAGAGCA&UCCUUUCUUC-UUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3436_c0_g1_1338_TPlot.pdf
TRINITY_DN3437_c0_g1:1445	si_s310	TRINITY_DN3437_c0_g1	1431	1454	1445	-32.10	-21.40	0.666666666666667	10	2-10,1453-1445;11-19,1441-1433	1-1,1454-1454[UP5];x-x,1444-1442[BULt];20-21,1432-1431[UP3]	..(((((((((...(((((((((.&.)))))))))---)))))))))..	UAGAGGAGGACAGUAGAAUUUUCU&CGAAAAUUCU---GUCCUUCUUGU	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN3437_c0_g1_1445_TPlot.pdf
TRINITY_DN34388_c0_g1:114	si_s81	TRINITY_DN34388_c0_g1	102	123	114	-28.90	-24.00	0.830449826989619	5.5	2-14,122-110;15-20,108-103	1-1,123-123[UP5];x-x,109-109[BULt];21-21,102-102[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	CGGAGAACGAGAGGAAGGAAAU&UUUUCUUUCCUUUC-UUCUUCU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN34388_c0_g1_114_TPlot.pdf
TRINITY_DN34388_c0_g1:119	si_s76	TRINITY_DN34388_c0_g1	108	128	119	-23.60	-17.50	0.741525423728813	14.5	7-19,122-110	1-6,128-123[UP5];20-21,109-108[UP3]	..(((((((((((((......&......)))))))))))))..	ACGAGAGGAAGGAAAUGAUGA&AUUUUUUUUCUUUCCUUUCUU	0	0.629569563496351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN34388_c0_g1_119_TPlot.pdf
TRINITY_DN3438_c0_g1:3440	si_a633	TRINITY_DN3438_c0_g1	3429	3449	3440	-26.40	-17.30	0.65530303030303	8	1-17,3449-3433	18-21,3432-3429[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUCCAAAAAGAUUGAUAUGA&UUAUGUCGAUUUUUUUGAGUA	4	0.999999999996916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3438_c0_g1_3440_TPlot.pdf
TRINITY_DN3438_c0_g1:3442	si_a631	TRINITY_DN3438_c0_g1	3431	3451	3442	-25.70	-17.30	0.673151750972763	8.5	3-19,3449-3433	1-2,3451-3450[UP5];20-21,3432-3431[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UCCAAAAAGAUUGAUAUGAGA&UAUUAUGUCGAUUUUUUUGAG	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN3438_c0_g1_3442_TPlot.pdf
TRINITY_DN3438_c0_g1:3443	si_a630	TRINITY_DN3438_c0_g1	3432	3452	3443	-25.80	-17.30	0.670542635658915	9.5	4-20,3449-3433	1-3,3452-3450[UP5];21-21,3432-3432[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CCAAAAAGAUUGAUAUGAGAA&GUAUUAUGUCGAUUUUUUUGA	3	0.999997821875828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN3438_c0_g1_3443_TPlot.pdf
TRINITY_DN3438_c0_g1:5668	si_a404	TRINITY_DN3438_c0_g1	5657	5677	5668	-21.70	-14.60	0.672811059907834	10.5	1-1,5677-5677;4-17,5674-5661	2-3,5676-5675[SIL];18-21,5660-5657[UP3]	....((((((((((((((..(&)..))))))))))))))....	ACAUUAUGAGCAAGACAAGAC&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3438_c0_g1_5668_TPlot.pdf
TRINITY_DN34394_c0_g2:462	si_a820	TRINITY_DN34394_c0_g2	449	471	462	-28.20	-18.50	0.656028368794326	5	1-15,471-457;16-20,454-450	x-x,456-455[BULt];21-21,449-449[UP3]	.(((((..(((((((((((((((&)))))))))))))))--))))).	CUUUUCCAUUUCUUUUUUUCUUC&GAAGAAGAAAGGAAA--GAAAAA	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN34394_c0_g2_462_TPlot.pdf
TRINITY_DN34394_c0_g2:468	si_a814	TRINITY_DN34394_c0_g2	457	477	468	-32.90	-22.10	0.671732522796353	6	4-21,474-457	1-3,477-475[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUCUUUUUUUCUUCUUCUAU&AGCGAAGAAGAAGAAAGGAAA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN34394_c0_g2_468_TPlot.pdf
TRINITY_DN3439_c0_g1:2194	si_a496	TRINITY_DN3439_c0_g1	2183	2203	2194	-32.40	-22.20	0.685185185185185	6.5	1-6,2203-2198;8-18,2196-2186	7-7,2197-2197[SIL];19-21,2185-2183[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	GCAAAGACGAAAGAGGACAUG&UAUGUCGUUUUUCGUCUUCCU	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3439_c0_g1_2194_TPlot.pdf
TRINITY_DN3439_c0_g1:2198	si_a492	TRINITY_DN3439_c0_g1	2187	2207	2198	-30.20	-21.30	0.705298013245033	10.5	5-10,2203-2198;12-21,2196-2187	1-4,2207-2204[UP5];11-11,2197-2197[SIL]	((((((((((.((((((....&....)))))).))))))))))	AGACGAAAGAGGACAUGAAAA&AGAAUAUGUCGUUUUUCGUCU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN3439_c0_g1_2198_TPlot.pdf
TRINITY_DN3439_c0_g1:2199	si_a491	TRINITY_DN3439_c0_g1	2188	2208	2199	-29.90	-20.00	0.668896321070234	12.5	6-11,2203-2198;13-21,2196-2188	1-5,2208-2204[UP5];12-12,2197-2197[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GACGAAAGAGGACAUGAAAAA&UAGAAUAUGUCGUUUUUCGUC	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN3439_c0_g1_2199_TPlot.pdf
TRINITY_DN34406_c0_g2:374	si_a55	TRINITY_DN34406_c0_g2	363	384	374	-38.90	-26.90	0.691516709511568	5.5	1-4,384-381;5-16,379-368;18-21,366-363	x-x,380-380[BULt];17-17,367-367[SIL]	((((.((((((((((((.((((&))))-)))))))))))).))))	GAAAAGAGCGGGUCGACGUUCU&AGGA-GUCGACUCGCUUCUUUC	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN34406_c0_g2_374_TPlot.pdf
TRINITY_DN34418_c0_g2:1095	si_s802	TRINITY_DN34418_c0_g2	1084	1104	1095	-26.40	-18.00	0.681818181818182	8.5	1-15,1104-1090	16-21,1089-1084[UP3]	......(((((((((((((((&)))))))))))))))......	CCAAUAGACGAAGAUGAAGUA&UAUUUUAUCUUCGUUACCUUU	2	0.999924879086262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN34418_c0_g2_1095_TPlot.pdf
TRINITY_DN34418_c0_g2:1101	si_s796	TRINITY_DN34418_c0_g2	1090	1109	1101	-30.30	-21.30	0.702970297029703	7.5	3-5,1107-1105;7-21,1104-1090	1-2,1109-1108[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GACGAAGAUGAAGUA-GAGAU&AGCUCGUAUUUUAUCUUCGUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN34418_c0_g2_1101_TPlot.pdf
TRINITY_DN3441_c0_g1:475	si_a481	TRINITY_DN3441_c0_g1	464	484	475	-25.60	-17.30	0.67578125	8	4-14,481-471;17-21,468-464	1-3,484-482[UP5];15-16,470-469[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	GGCGUCAUCUAUAUAACAGAA&UAUUGUUAUAUAGAAUAUGUC	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN3441_c0_g1_475_TPlot.pdf
TRINITY_DN3442_c0_g1:845	si_s485	TRINITY_DN3442_c0_g1	834	854	845	-18.10	-13.10	0.723756906077348	8	1-6,854-849;9-18,846-837	7-8,848-847[SIL];19-21,836-834[UP3]	...((((((((((..((((((&))))))..))))))))))...	AAAAUAUUUAAAUUUAUGUAG&CUAUAUUUAUUUAAAUAUAAA	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN3442_c0_g1_845_TPlot.pdf
TRINITY_DN3442_c0_g1:846	si_s484	TRINITY_DN3442_c0_g1	835	855	846	-20.50	-15.70	0.765853658536585	7	1-7,855-849;10-19,846-837	8-9,848-847[SIL];20-21,836-835[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	AAAUAUUUAAAUUUAUGUAGG&CCUAUAUUUAUUUAAAUAUAA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN3442_c0_g1_846_TPlot.pdf
TRINITY_DN34442_c2_g2:1131	si_a643	TRINITY_DN34442_c2_g2	1120	1140	1131	-28.30	-21.88	0.773144876325088	6	1-10,1140-1131;14-21,1127-1120	11-13,1130-1128[SIL]	((((((((...((((((((((&))))))))))...))))))))	CCCGAUAUUUCGCUCAAAAAA&UUUUUUGAGUAAUAUAUCGGG	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN34442_c2_g2_1131_TPlot.pdf
TRINITY_DN34442_c2_g2:1132	si_a642	TRINITY_DN34442_c2_g2	1121	1141	1132	-25.90	-18.98	0.732818532818533	6	2-11,1140-1131;15-21,1127-1121	1-1,1141-1141[UP5];12-14,1130-1128[SIL]	(((((((...((((((((((.&.))))))))))...)))))))	CCGAUAUUUCGCUCAAAAAAU&UUUUUUUGAGUAAUAUAUCGG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN34442_c2_g2_1132_TPlot.pdf
TRINITY_DN34442_c2_g2:2946	si_a646	TRINITY_DN34442_c2_g2	2935	2955	2946	-29.40	-21.58	0.734013605442177	9	1-7,2955-2949;11-19,2945-2937	8-10,2948-2946[SIL];20-21,2936-2935[UP3]	..(((((((((...(((((((&)))))))...)))))))))..	AAUCCCGAUAUUUCGCUCAAA&UUUGAGUAAUAUAUCGGGAAA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN34442_c2_g2_2946_TPlot.pdf
TRINITY_DN34442_c2_g2:2947	si_a645	TRINITY_DN34442_c2_g2	2936	2956	2947	-29.40	-22.48	0.764625850340136	8	1-8,2956-2949;12-20,2945-2937	9-11,2948-2946[SIL];21-21,2936-2936[UP3]	.(((((((((...((((((((&))))))))...))))))))).	AUCCCGAUAUUUCGCUCAAAA&UUUUGAGUAAUAUAUCGGGAA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN34442_c2_g2_2947_TPlot.pdf
TRINITY_DN34442_c2_g2:2949	si_a643	TRINITY_DN34442_c2_g2	2938	2958	2949	-28.30	-21.88	0.773144876325088	6	1-10,2958-2949;14-21,2945-2938	11-13,2948-2946[SIL]	((((((((...((((((((((&))))))))))...))))))))	CCCGAUAUUUCGCUCAAAAAA&UUUUUUGAGUAAUAUAUCGGG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN34442_c2_g2_2949_TPlot.pdf
TRINITY_DN34442_c2_g2:2950	si_a642	TRINITY_DN34442_c2_g2	2939	2959	2950	-25.90	-18.98	0.732818532818533	6	2-11,2958-2949;15-21,2945-2939	1-1,2959-2959[UP5];12-14,2948-2946[SIL]	(((((((...((((((((((.&.))))))))))...)))))))	CCGAUAUUUCGCUCAAAAAAU&UUUUUUUGAGUAAUAUAUCGG	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN34442_c2_g2_2950_TPlot.pdf
TRINITY_DN3444_c0_g1:2212	si_s628	TRINITY_DN3444_c0_g1	2201	2222	2212	-35.40	-23.50	0.663841807909605	7.5	1-3,2222-2220;4-6,2218-2216;8-15,2214-2207;17-21,2205-2201	x-x,2219-2219[BULt];7-7,2215-2215[SIL];16-16,2206-2206[SIL]	(((((.((((((((.(((.(((&)))-))).)))))))).)))))	AGACGGCUAUGAGACGAUGCGC&GCG-AUCUUUUCGUAGGCGUUU	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN3444_c0_g1_2212_TPlot.pdf
TRINITY_DN3444_c0_g1:7268	si_s809	TRINITY_DN3444_c0_g1	7257	7278	7268	-28.50	-18.90	0.663157894736842	8	1-4,7278-7275;5-7,7273-7271;9-18,7269-7260	x-x,7274-7274[BULt];8-8,7270-7270[SIL];19-21,7259-7257[UP3]	...((((((((((.(((.((((&))))-))).))))))))))...	AAGAAGAGGAGGUCACGCAAGA&UCUU-CGUUACCUUUUCUUAAU	3	0.999999998653902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3444_c0_g1_7268_TPlot.pdf
TRINITY_DN3444_c0_g2:141	si_s846	TRINITY_DN3444_c0_g2	129	150	141	-37.30	-24.60	0.659517426273459	12	4-4,147-147;6-11,145-140;13-20,137-130	1-3,150-148[UP5];5-5,146-146[SIL];12-12,139-138[AILt];21-21,129-129[UP3]	.((((((((..((((((.(...&...).))))))-.)))))))).	GAGGAGUCGCUCUCGCUCCAUU&AAAGAAGCGAG-UCGACUCCUA	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN3444_c0_g2_141_TPlot.pdf
TRINITY_DN3444_c0_g2:1446	si_s296	TRINITY_DN3444_c0_g2	1435	1455	1446	-31.60	-20.60	0.651898734177215	10	1-5,1455-1451;7-15,1449-1441	6-6,1450-1450[SIL];16-21,1440-1435[UP3]	......(((((((((.(((((&))))).)))))))))......	UCUGGAGCAGUUCCAUUUGAC&GUCGAUUGGAAUUGCGAAAAU	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN3444_c0_g2_1446_TPlot.pdf
TRINITY_DN3444_c0_g2:1447	si_s295	TRINITY_DN3444_c0_g2	1436	1456	1447	-32.20	-21.70	0.673913043478261	8.5	1-6,1456-1451;8-16,1449-1441	7-7,1450-1450[SIL];17-21,1440-1436[UP3]	.....(((((((((.((((((&)))))).))))))))).....	CUGGAGCAGUUCCAUUUGACU&AGUCGAUUGGAAUUGCGAAAA	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN3444_c0_g2_1447_TPlot.pdf
TRINITY_DN3444_c0_g2:1448	si_s294	TRINITY_DN3444_c0_g2	1437	1457	1448	-32.60	-21.70	0.665644171779141	8.5	2-7,1456-1451;9-17,1449-1441	1-1,1457-1457[UP5];8-8,1450-1450[SIL];18-21,1440-1437[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	UGGAGCAGUUCCAUUUGACUC&UAGUCGAUUGGAAUUGCGAAA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN3444_c0_g2_1448_TPlot.pdf
TRINITY_DN3444_c0_g2:1577	si_s295	TRINITY_DN3444_c0_g2	1565	1586	1577	-32.20	-21.60	0.670807453416149	7.5	1-10,1586-1577;11-17,1575-1569	x-x,1576-1576[BULt];18-21,1568-1565[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	CUCCUGCAAUUCCCAAUUGACU&AGUCGAUUGG-AAUUGCGAAAA	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN3444_c0_g2_1577_TPlot.pdf
TRINITY_DN3444_c0_g2:1578	si_s294	TRINITY_DN3444_c0_g2	1566	1587	1578	-32.60	-21.60	0.662576687116564	7.5	2-11,1586-1577;12-18,1575-1569	1-1,1587-1587[UP5];x-x,1576-1576[BULt];19-21,1568-1566[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	UCCUGCAAUUCCCAAUUGACUU&UAGUCGAUUGG-AAUUGCGAAA	2	0.942165400938476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN3444_c0_g2_1578_TPlot.pdf
TRINITY_DN3444_c0_g2:1580	si_s292	TRINITY_DN3444_c0_g2	1568	1589	1580	-36.60	-24.80	0.677595628415301	5.5	1-2,1589-1588;4-13,1586-1577;14-20,1575-1569	3-3,1587-1587[SIL];x-x,1576-1576[BULt];21-21,1568-1568[UP3]	.(((((((.((((((((((.((&)).))))))))))-))))))).	CUGCAAUUCCCAAUUGACUUGG&CCUAGUCGAUUGG-AAUUGCGA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN3444_c0_g2_1580_TPlot.pdf
TRINITY_DN3444_c0_g2:1581	si_s291	TRINITY_DN3444_c0_g2	1569	1595	1581	-38.10	-26.50	0.695538057742782	12.5	1-4,1595-1592;5-14,1586-1577;15-21,1575-1569	x-x,1591-1587[BULt];x-x,1576-1576[BULt]	(((((((.((((((((((.....((((&))))-----))))))))))-)))))))	UGCAAUUCCCAAUUGACUUGGAAAGGC&GCCU-----AGUCGAUUGG-AAUUGCG	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN3444_c0_g2_1581_TPlot.pdf
TRINITY_DN3444_c0_g2:1582	si_s290	TRINITY_DN3444_c0_g2	1570	1596	1582	-38.10	-25.80	0.677165354330709	13	2-5,1595-1592;6-15,1586-1577;16-21,1575-1570	1-1,1596-1596[UP5];x-x,1591-1587[BULt];x-x,1576-1576[BULt]	((((((.((((((((((.....((((.&.))))-----))))))))))-))))))	GCAAUUCCCAAUUGACUUGGAAAGGCA&CGCCU-----AGUCGAUUGG-AAUUGC	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN3444_c0_g2_1582_TPlot.pdf
TRINITY_DN3444_c0_g2:1619	si_a724	TRINITY_DN3444_c0_g2	1608	1628	1619	-36.70	-24.20	0.659400544959128	10	1-13,1628-1616	14-21,1615-1608[UP3]	........(((((((((((((&)))))))))))))........	GCAACGUGGCCCGAGUGAUGA&UCGUUACUCGGGCAUCUUUAC	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN3444_c0_g2_1619_TPlot.pdf
TRINITY_DN3444_c0_g2:1620	si_a723	TRINITY_DN3444_c0_g2	1609	1629	1620	-35.10	-24.20	0.689458689458689	10	2-14,1628-1616	1-1,1629-1629[UP5];15-21,1615-1609[UP3]	.......(((((((((((((.&.))))))))))))).......	CAACGUGGCCCGAGUGAUGAA&AUCGUUACUCGGGCAUCUUUA	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN3444_c0_g2_1620_TPlot.pdf
TRINITY_DN3444_c0_g2:1621	si_a722	TRINITY_DN3444_c0_g2	1610	1630	1621	-34.70	-24.20	0.697406340057637	11	3-15,1628-1616	1-2,1630-1629[UP5];16-21,1615-1610[UP3]	......(((((((((((((..&..)))))))))))))......	AACGUGGCCCGAGUGAUGAAU&AAUCGUUACUCGGGCAUCUUU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN3444_c0_g2_1621_TPlot.pdf
TRINITY_DN3444_c0_g2:1622	si_a721	TRINITY_DN3444_c0_g2	1611	1631	1622	-35.10	-24.20	0.689458689458689	12	4-16,1628-1616	1-3,1631-1629[UP5];17-21,1615-1611[UP3]	.....(((((((((((((...&...))))))))))))).....	ACGUGGCCCGAGUGAUGAAUG&UAAUCGUUACUCGGGCAUCUU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN3444_c0_g2_1622_TPlot.pdf
TRINITY_DN3444_c0_g2:1624	si_a719	TRINITY_DN3444_c0_g2	1613	1633	1624	-34.60	-24.20	0.699421965317919	14	6-18,1628-1616	1-5,1633-1629[UP5];19-21,1615-1613[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUGGCCCGAGUGAUGAAUGCC&AAUAAUCGUUACUCGGGCAUC	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN3444_c0_g2_1624_TPlot.pdf
TRINITY_DN3444_c0_g2:1733	si_s629	TRINITY_DN3444_c0_g2	1721	1742	1733	-34.60	-23.70	0.684971098265896	8	2-6,1741-1737;8-16,1735-1727;17-20,1725-1722	1-1,1742-1742[UP5];7-7,1736-1736[SIL];x-x,1726-1726[BULt];21-21,1721-1721[UP3]	.((((.(((((((((.(((((.&.))))).)))))))))-)))).	GAGGCGGCCUACGAGCGGAUCC&CGAUCUUUUCGUAGGC-GUUUG	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3444_c0_g2_1733_TPlot.pdf
TRINITY_DN3444_c0_g2:1736	si_s626	TRINITY_DN3444_c0_g2	1725	1745	1736	-36.10	-23.50	0.650969529085873	9	2-3,1744-1743;5-9,1741-1737;11-19,1735-1727	1-1,1745-1745[UP5];4-4,1742-1742[SIL];10-10,1736-1736[SIL];20-21,1726-1725[UP3]	..(((((((((.(((((.((.&.)).))))).)))))))))..	CGGCCUACGAGCGGAUCCCUG&AAGCGAUCUUUUCGUAGGCGU	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3444_c0_g2_1736_TPlot.pdf
TRINITY_DN3444_c0_g2:2303	si_a154	TRINITY_DN3444_c0_g2	2292	2312	2303	-27.00	-18.30	0.677777777777778	11.5	3-16,2310-2297	1-2,2312-2311[UP5];17-21,2296-2292[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACGCUGUUGACCUUGAGGCUG&UUGUUUUAAGGUCAAUCUAUU	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN3444_c0_g2_2303_TPlot.pdf
TRINITY_DN3444_c0_g2:25	si_s68	TRINITY_DN3444_c0_g2	14	34	25	-23.10	-16.80	0.727272727272727	9	3-13,32-22;15-21,20-14	1-2,34-33[UP5];14-14,21-21[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAAGAGAUGAAGUGGGGGUGG&CAACUUCUAUUUUUUUUCUUU	4	0.999999334405607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3444_c0_g2_25_TPlot.pdf
TRINITY_DN3444_c0_g2:803	si_s658	TRINITY_DN3444_c0_g2	789	812	803	-37.30	-24.90	0.667560321715818	11.5	2-10,811-803;11-16,798-793;18-20,792-790	1-1,812-812[UP5];x-x,802-799[BULt];17-17,x-x[BULq];21-21,789-789[UP3]	.(((-((((((....(((((((((.&.)))))))))----)))))).))).	CCGA-UCGAUCCUGACCCCGAUUGG&ACAAUCGGGG----GAUCGAAUUGA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s658_TRINITY_DN3444_c0_g2_803_TPlot.pdf
TRINITY_DN3444_c0_g2:832	si_s93	TRINITY_DN3444_c0_g2	820	841	832	-34.80	-23.50	0.675287356321839	5.5	1-11,841-831;13-16,828-825;18-21,823-820	12-12,830-829[AILt];17-17,824-824[SIL]	((((.((((..(((((((((((&)))))))))))-.)))).))))	AGUCAGAAGAGGAAGAAGAAGA&UCUUCUUCUUC-GCUUCGGAUU	3	0.999999993730206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3444_c0_g2_832_TPlot.pdf
TRINITY_DN3444_c0_g2:840	si_s70	TRINITY_DN3444_c0_g2	829	849	840	-25.80	-18.30	0.709302325581395	7	2-6,848-844;8-20,842-830	1-1,849-849[UP5];7-7,843-843[SIL];21-21,829-829[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGGAAGAAGAAGAAGAGGAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999673675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3444_c0_g2_840_TPlot.pdf
TRINITY_DN34452_c0_g1:875	si_a17	TRINITY_DN34452_c0_g1	864	884	875	-24.30	-16.38	0.674074074074074	11	3-7,882-878;11-21,874-864	1-2,884-883[UP5];8-10,877-875[SIL]	(((((((((((...(((((..&..)))))...)))))))))))	GGCUGGAAAUAUACAGGCUGU&AAAGCCUAUUUAUUUUUAGUU	4	0.999999618795197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN34452_c0_g1_875_TPlot.pdf
TRINITY_DN3445_c0_g1:1406	si_s893	TRINITY_DN3445_c0_g1	1395	1415	1406	-29.10	-19.60	0.673539518900344	11.5	2-5,1414-1411;7-17,1409-1399	1-1,1415-1415[UP5];6-6,1410-1410[SIL];18-21,1398-1395[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	AGCAGAGGAGGAGGUGUGUUG&AAAUAGGCUUUCUCUUCAAUU	4	0.999998657188711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN3445_c0_g1_1406_TPlot.pdf
TRINITY_DN3446_c0_g1:1316	si_a884	TRINITY_DN3446_c0_g1	1305	1325	1316	-25.60	-16.70	0.65234375	8	1-4,1325-1322;6-9,1320-1317;11-19,1315-1307	5-5,1321-1321[SIL];10-10,1316-1316[SIL];20-21,1306-1305[UP3]	..(((((((((.((((.((((&)))).)))).)))))))))..	GGAUUGCUGUGAUGAUAGCAA&UUGCAAUCAAUAUAGUAAUAA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN3446_c0_g1_1316_TPlot.pdf
TRINITY_DN3446_c2_g1:279	si_a595	TRINITY_DN3446_c2_g1	268	288	279	-30.30	-20.00	0.66006600660066	9	3-14,286-275;16-18,273-271	1-2,288-287[UP5];15-15,274-274[SIL];19-21,270-268[UP3]	...(((.((((((((((((..&..)))))))))))).)))...	AAAUGUAGAAGUUCUGUCCAG&AAGGACAGAAUUUUCGCAAUU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN3446_c2_g1_279_TPlot.pdf
TRINITY_DN3447_c0_g1:498	si_a22	TRINITY_DN3447_c0_g1	487	506	498	-23.50	-16.10	0.685106382978724	7.5	1-6,506-501;8-19,500-489	7-7,x-x[BULq];20-21,488-487[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	AAUGGAACUGAAAG-AAGUAG&CUAUUUAUUUUUAGUUCUAAG	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN3447_c0_g1_498_TPlot.pdf
TRINITY_DN34480_c0_g2:75	si_s1	TRINITY_DN34480_c0_g2	65	84	75	-18.70	-13.00	0.695187165775401	6.5	1-14,84-71;16-20,70-66	15-15,x-x[BULq];21-21,65-65[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	CAAUAG-AAGUAGUAUAGGGA&UUUUUAUAUUACUUAUUAUUA	4	0.99999838304197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN34480_c0_g2_75_TPlot.pdf
TRINITY_DN34492_c1_g1:14	si_a502	TRINITY_DN34492_c1_g1	2	23	14	-32.10	-20.90	0.651090342679128	8.5	1-7,23-17;9-17,15-7;18-19,5-4	8-8,16-16[SIL];x-x,6-6[BULt];20-21,3-2[UP3]	..((.(((((((((.(((((((&))))))).)))))))))-))..	CCUCGCAAGGAGGAAGAGAGAU&GUUUUUCGUCUUCCUUG-GAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN34492_c1_g1_14_TPlot.pdf
TRINITY_DN3449_c0_g1:1039	si_s355	TRINITY_DN3449_c0_g1	1027	1048	1039	-28.10	-18.70	0.665480427046263	10	5-13,1044-1036;15-17,1034-1032;18-21,1030-1027	1-4,1048-1045[UP5];14-14,1035-1035[SIL];x-x,1031-1031[BULt]	((((.(((.(((((((((....&....))))))))).)))-))))	CGGUAUCAUUCUGUUUCUCCUC&AUAAAGAAAUAGAUUGA-ACCG	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s355_TRINITY_DN3449_c0_g1_1039_TPlot.pdf
TRINITY_DN3449_c0_g1:973	si_a633	TRINITY_DN3449_c0_g1	963	982	973	-26.40	-19.00	0.71969696969697	8	4-15,979-968;17-20,967-964	1-3,982-980[UP5];16-16,x-x[BULq];21-21,963-963[UP3]	.((((-((((((((((((...&...)))))))))))).)))).	CGCUC-AAGAAAUCGACAGUG&UUAUGUCGAUUUUUUUGAGUA	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3449_c0_g1_973_TPlot.pdf
TRINITY_DN344_c0_g1:4848	si_a889	TRINITY_DN344_c0_g1	4837	4856	4848	-23.60	-15.80	0.669491525423729	4.5	1-6,4856-4851;8-12,4850-4846;14-21,4844-4837	7-7,x-x[BULq];13-13,4845-4845[SIL]	((((((((.(((((-((((((&)))))).))))).))))))))	ACUUGUUAGUGCUA-AUUGAU&AUCAAUAUAGUAAUAAUAAGU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN344_c0_g1_4848_TPlot.pdf
TRINITY_DN344_c0_g1:5674	si_a194	TRINITY_DN344_c0_g1	5663	5683	5674	-29.40	-19.30	0.656462585034014	13	5-16,5679-5668	1-4,5683-5680[UP5];17-21,5667-5663[UP3]	.....((((((((((((....&....)))))))))))).....	UAAACUUAGUGAGCAGGAAAU&UUUCCCUGUUCACUAAUAAAU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN344_c0_g1_5674_TPlot.pdf
TRINITY_DN3450_c0_g1:1049	si_a35	TRINITY_DN3450_c0_g1	1037	1058	1049	-37.80	-24.60	0.650793650793651	8.5	1-12,1058-1047;13-15,1045-1043;17-20,1041-1038	x-x,1046-1046[BULt];16-16,1042-1042[SIL];21-21,1037-1037[UP3]	.((((.(((.((((((((((((&))))))))))))-))).)))).	GAGGCGUACAUGGUUUUGGGAC&GUUCUAAGACCG-GUAGGUCUA	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN3450_c0_g1_1049_TPlot.pdf
TRINITY_DN3450_c0_g1:1113	si_a714	TRINITY_DN3450_c0_g1	1102	1122	1113	-31.90	-20.98	0.657680250783699	9	1-7,1122-1116;11-15,1112-1108;17-21,1106-1102	8-10,1115-1113[SIL];16-16,1107-1107[SIL]	(((((.(((((...(((((((&)))))))...))))).)))))	CCGAGAGGCGGGUUUUUUGGA&UCCAAAAUAAUCGUUACUCGG	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a714_TRINITY_DN3450_c0_g1_1113_TPlot.pdf
TRINITY_DN3450_c0_g1:1187	si_a478	TRINITY_DN3450_c0_g1	1176	1196	1187	-21.30	-14.80	0.694835680751174	10	4-7,1193-1190;10-21,1187-1176	1-3,1196-1194[UP5];8-9,1189-1188[SIL]	((((((((((((..((((...&...))))..))))))))))))	AUAUUCUAUAUAUAGAUAUAU&AAUUAUUGUUAUAUAGAAUAU	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN3450_c0_g1_1187_TPlot.pdf
TRINITY_DN34510_c0_g1:416	si_s454	TRINITY_DN34510_c0_g1	406	427	416	-25.50	-16.60	0.650980392156863	7	1-6,427-422;7-11,419-415;13-20,414-407	x-x,421-420[BULt];12-12,x-x[BULq];21-21,406-406[UP3]	.((((((((-(((((..((((((&))))))--))))).)))))))).	CUAUGAGAU-AUUGUGCUGUUAU&AUAACA--ACAAUUAUCUCAUAU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN34510_c0_g1_416_TPlot.pdf
TRINITY_DN3451_c0_g2:343	si_a146	TRINITY_DN3451_c0_g2	332	351	343	-29.70	-20.40	0.686868686868687	6.5	1-7,351-345;9-10,344-343;12-21,341-332	8-8,x-x[BULq];11-11,342-342[SIL]	((((((((((.((-(((((((&))))))).)).))))))))))	GACCUUAAGAGAA-GACGGUU&AAUCGUUGUUGUUUUAAGGUC	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN3451_c0_g2_343_TPlot.pdf
TRINITY_DN3452_c0_g1:1568	si_s88	TRINITY_DN3452_c0_g1	1556	1578	1568	-34.80	-23.10	0.663793103448276	6.5	1-6,1578-1573;7-13,1571-1565;15-17,1563-1561;18-21,1559-1556	x-x,1572-1572[BULt];14-14,1564-1564[SIL];x-x,1560-1560[BULt]	((((.(((.(((((((.((((((&))))))-))))))).)))-))))	GAAGAUGAUGAAGAGGAAGAGGA&UCCUUU-CUUCUUCUUCG-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3452_c0_g1_1568_TPlot.pdf
TRINITY_DN3452_c0_g1:1701	si_a70	TRINITY_DN3452_c0_g1	1682	1710	1701	-23.90	-16.00	0.669456066945607	22	1-10,1710-1701;11-18,1692-1685	x-x,1700-1693[BULt];19-21,1684-1682[UP3]	...((((((((........((((((((((&))))))))))--------))))))))...	CAGGAGAGACAGGAGUUCCGUUUGAGAGA&UCUUUCAAAU--------UGUUUUUCAUU	4	0.999999999733605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3452_c0_g1_1701_TPlot.pdf
TRINITY_DN3452_c0_g1:1766	si_s71	TRINITY_DN3452_c0_g1	1755	1774	1766	-25.70	-17.10	0.665369649805448	6.5	1-5,1774-1770;7-9,1769-1767;11-20,1765-1756	6-6,x-x[BULq];10-10,1766-1766[SIL];21-21,1755-1755[UP3]	.((((((((((.(((-(((((&))))).))).)))))))))).	UGGAAGGAAAACAAA-AGAGG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3452_c0_g1_1766_TPlot.pdf
TRINITY_DN3452_c0_g1:1767	si_s70	TRINITY_DN3452_c0_g1	1756	1775	1767	-25.80	-16.90	0.655038759689922	6.5	2-6,1774-1770;8-10,1769-1767;12-21,1765-1756	1-1,1775-1775[UP5];7-7,x-x[BULq];11-11,1766-1766[SIL]	((((((((((.(((-(((((.&.))))).))).))))))))))	GGAAGGAAAACAAA-AGAGGG&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3452_c0_g1_1767_TPlot.pdf
TRINITY_DN3452_c0_g1:1784	si_s33	TRINITY_DN3452_c0_g1	1773	1793	1784	-24.10	-18.40	0.763485477178423	8.5	1-14,1793-1780	15-21,1779-1773[UP3]	.......((((((((((((((&)))))))))))))).......	GGGCUAAAGAGAUUUGGUUGC&GCAACUAAAUCUUUAAUAAUU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN3452_c0_g1_1784_TPlot.pdf
TRINITY_DN3452_c0_g1:1785	si_s32	TRINITY_DN3452_c0_g1	1774	1794	1785	-24.80	-18.60	0.75	8.5	2-15,1793-1780	1-1,1794-1794[UP5];16-21,1779-1774[UP3]	......((((((((((((((.&.))))))))))))))......	GGCUAAAGAGAUUUGGUUGCU&UGCAACUAAAUCUUUAAUAAU	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN3452_c0_g1_1785_TPlot.pdf
TRINITY_DN3452_c0_g1:1786	si_s31	TRINITY_DN3452_c0_g1	1775	1795	1786	-24.80	-18.60	0.75	9.5	3-16,1793-1780	1-2,1795-1794[UP5];17-21,1779-1775[UP3]	.....((((((((((((((..&..)))))))))))))).....	GCUAAAGAGAUUUGGUUGCUG&UUGCAACUAAAUCUUUAAUAA	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN3452_c0_g1_1786_TPlot.pdf
TRINITY_DN3452_c0_g1:1787	si_s30	TRINITY_DN3452_c0_g1	1776	1796	1787	-24.80	-18.60	0.75	10.5	4-17,1793-1780	1-3,1796-1794[UP5];18-21,1779-1776[UP3]	....((((((((((((((...&...))))))))))))))....	CUAAAGAGAUUUGGUUGCUGA&AUUGCAACUAAAUCUUUAAUA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN3452_c0_g1_1787_TPlot.pdf
TRINITY_DN3452_c0_g1:1788	si_s29	TRINITY_DN3452_c0_g1	1777	1797	1788	-26.40	-18.60	0.704545454545455	11.5	5-18,1793-1780	1-4,1797-1794[UP5];19-21,1779-1777[UP3]	...((((((((((((((....&....))))))))))))))...	UAAAGAGAUUUGGUUGCUGAG&GAUUGCAACUAAAUCUUUAAU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN3452_c0_g1_1788_TPlot.pdf
TRINITY_DN3452_c0_g1:1789	si_s28	TRINITY_DN3452_c0_g1	1778	1798	1789	-27.00	-18.60	0.688888888888889	12.5	6-19,1793-1780	1-5,1798-1794[UP5];20-21,1779-1778[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAGAGAUUUGGUUGCUGAGA&UGAUUGCAACUAAAUCUUUAA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN3452_c0_g1_1789_TPlot.pdf
TRINITY_DN3452_c0_g1:1877	si_s78	TRINITY_DN3452_c0_g1	1864	1886	1877	-26.20	-17.20	0.656488549618321	7.5	1-10,1886-1877;11-19,1874-1866	x-x,1876-1875[BULt];20-21,1865-1864[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	AAAAGAGGGGACUAAGAAAAAAG&UUUUUUUCUU--UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3452_c0_g1_1877_TPlot.pdf
TRINITY_DN3452_c0_g1:1878	si_s77	TRINITY_DN3452_c0_g1	1865	1887	1878	-25.50	-17.20	0.674509803921569	8	2-11,1886-1877;12-20,1874-1866	1-1,1887-1887[UP5];x-x,1876-1875[BULt];21-21,1865-1865[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	AAAGAGGGGACUAAGAAAAAAGU&UUUUUUUUCUU--UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3452_c0_g1_1878_TPlot.pdf
TRINITY_DN3453_c0_g1:581	si_a792	TRINITY_DN3453_c0_g1	570	592	581	-27.60	-18.90	0.684782608695652	9.5	1-8,592-585;9-16,582-575;18-21,573-570	x-x,584-583[BULt];17-17,574-574[SIL]	((((.((((((((..((((((((&))))))))--)))))))).))))	CGGGCUGGAAAAUUGGGAGGAGU&AUUUUUCU--AUUUUCCAAUCCG	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3453_c0_g1_581_TPlot.pdf
TRINITY_DN3453_c0_g1:582	si_a791	TRINITY_DN3453_c0_g1	571	593	582	-26.50	-17.40	0.656603773584906	10	1-9,593-585;10-17,582-575;19-21,573-571	x-x,584-583[BULt];18-18,574-574[SIL]	(((.((((((((..(((((((((&)))))))))--)))))))).)))	GGGCUGGAAAAUUGGGAGGAGUG&UAUUUUUCU--AUUUUCCAAUCC	2	0.999961640317944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN3453_c0_g1_582_TPlot.pdf
TRINITY_DN3453_c0_g1:595	si_s74	TRINITY_DN3453_c0_g1	584	604	595	-25.00	-16.60	0.664	10.5	4-12,601-593;14-21,591-584	1-3,604-602[UP5];13-13,592-592[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GGGAGGAGUGAAGAGAGAAUU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3453_c0_g1_595_TPlot.pdf
TRINITY_DN3453_c0_g1:597	si_a323	TRINITY_DN3453_c0_g1	586	610	597	-26.80	-18.80	0.701492537313433	14.5	1-3,610-608;5-7,606-604;8-21,599-586	4-4,607-607[SIL];x-x,603-600[BULt]	((((((((((((((....(((.(((&))).)))----))))))))))))))	GAGGAGUGAAGAGAGAAUUCGAGGA&UCCAUGA----UUUUUUUAUUCCUU	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3453_c0_g1_597_TPlot.pdf
TRINITY_DN3453_c0_g1:647	si_a452	TRINITY_DN3453_c0_g1	636	656	647	-23.00	-15.00	0.652173913043478	14.5	7-20,650-637	1-6,656-651[UP5];21-21,636-636[UP3]	.((((((((((((((......&......)))))))))))))).	GUAUAUAUGGCAGCAUAGAUG&GAUAAUUGUUGUUAUAUAUAA	3	0.99999950308576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN3453_c0_g1_647_TPlot.pdf
TRINITY_DN34543_c0_g2:96	si_s732	TRINITY_DN34543_c0_g2	85	105	96	-34.40	-22.60	0.656976744186047	11	4-8,102-98;10-19,96-87	1-3,105-103[UP5];9-9,97-97[SIL];20-21,86-85[UP3]	..((((((((((.(((((...&...))))).))))))))))..	CGCUGUUCGCCCUUCUGGUCU&UAUCUAGACGGGUGAAUAGAU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN34543_c0_g2_96_TPlot.pdf
TRINITY_DN34557_c0_g1:580	si_s1	TRINITY_DN34557_c0_g1	569	589	580	-18.70	-12.60	0.67379679144385	14	7-20,583-570	1-6,589-584[UP5];21-21,569-569[UP3]	.((((((((((((((......&......)))))))))))))).	GAAUAAUGGGUGAUAACUGUC&UUUUUAUAUUACUUAUUAUUA	4	0.999999998822403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN34557_c0_g1_580_TPlot.pdf
TRINITY_DN3455_c0_g2:1229	si_a408	TRINITY_DN3455_c0_g2	1218	1238	1229	-20.10	-14.40	0.716417910447761	6.5	1-16,1238-1223	17-21,1222-1218[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUGGAAGAUAUAAACAAAAUA&UGUUUUGUUUAUAUUUAAAUA	4	0.999944831616923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN3455_c0_g2_1229_TPlot.pdf
TRINITY_DN3455_c0_g2:1230	si_a407	TRINITY_DN3455_c0_g2	1219	1239	1230	-19.80	-14.60	0.737373737373737	6.5	2-17,1238-1223	1-1,1239-1239[UP5];18-21,1222-1219[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGGAAGAUAUAAACAAAAUAU&UUGUUUUGUUUAUAUUUAAAU	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3455_c0_g2_1230_TPlot.pdf
TRINITY_DN3455_c0_g2:1551	si_a415	TRINITY_DN3455_c0_g2	1541	1560	1551	-18.10	-11.80	0.651933701657459	8.5	4-11,1557-1550;13-21,1549-1541	1-3,1560-1558[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	CUAUGUUUA-UUAAAUGUUUU&UUUAUAUUUAAAUAAAUAUAG	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN3455_c0_g2_1551_TPlot.pdf
TRINITY_DN3455_c0_g2:2835	si_a652	TRINITY_DN3455_c0_g2	2824	2844	2835	-31.90	-20.90	0.655172413793103	16	9-21,2836-2824	1-8,2844-2837[UP5]	(((((((((((((........&........)))))))))))))	UAGGCAUUUCCUGCCCCGAAA&UAAUAUAUCGGGAAAUGCCUA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN3455_c0_g2_2835_TPlot.pdf
TRINITY_DN3455_c0_g2:2904	si_a493	TRINITY_DN3455_c0_g2	2893	2911	2904	-29.50	-19.30	0.654237288135593	7	1-4,2911-2908;6-7,2907-2906;9-21,2905-2893	5-5,x-x[BULq];8-8,x-x[BULq]	(((((((((((((-((-((((&)))).)).)))))))))))))	AAGACGAAAGAUG-CG-AUUC&GAAUAUGUCGUUUUUCGUCUU	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN3455_c0_g2_2904_TPlot.pdf
TRINITY_DN3455_c0_g2:755	si_a447	TRINITY_DN3455_c0_g2	744	764	755	-25.70	-16.90	0.657587548638132	11	3-6,762-759;9-20,756-745	1-2,764-763[UP5];7-8,758-757[SIL];21-21,744-744[UP3]	.((((((((((((..((((..&..))))..)))))))))))).	GGUGACGGCAGUUCACUCAGU&UAUGAGAUAAUUGUUGUUAUA	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN3455_c0_g2_755_TPlot.pdf
TRINITY_DN3455_c0_g2:862	si_s71	TRINITY_DN3455_c0_g2	851	871	862	-25.70	-17.30	0.673151750972763	7	1-16,871-856	17-21,855-851[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCUUUGGGAAAGAAAUAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3455_c0_g2_862_TPlot.pdf
TRINITY_DN3455_c0_g2:863	si_s70	TRINITY_DN3455_c0_g2	852	872	863	-25.80	-17.30	0.670542635658915	7	2-17,871-856	1-1,872-872[UP5];18-21,855-852[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUUUGGGAAAGAAAUAGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3455_c0_g2_863_TPlot.pdf
TRINITY_DN3455_c0_g2:864	si_s69	TRINITY_DN3455_c0_g2	853	873	864	-23.40	-17.30	0.739316239316239	8	3-18,871-856	1-2,873-872[UP5];19-21,855-853[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUGGGAAAGAAAUAGAAGAA&AACUUCUAUUUUUUUUCUUUC	3	0.999999999171918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3455_c0_g2_864_TPlot.pdf
TRINITY_DN3455_c0_g2:865	si_s68	TRINITY_DN3455_c0_g2	854	874	865	-23.10	-17.30	0.748917748917749	8.5	4-19,871-856	1-3,874-872[UP5];20-21,855-854[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGGGAAAGAAAUAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	2	0.995968609530716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3455_c0_g2_865_TPlot.pdf
TRINITY_DN34563_c0_g1:80	si_s196	TRINITY_DN34563_c0_g1	68	89	80	-29.30	-19.60	0.668941979522184	10	3-12,87-78;13-18,76-71	1-2,89-88[UP5];x-x,77-77[BULt];19-21,70-68[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	AAAGGUACAUUUCCAGAAUGCC&AUUAUUUUGGAA-UGUACCAGU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN34563_c0_g1_80_TPlot.pdf
TRINITY_DN3459_c0_g1:1774	si_a318	TRINITY_DN3459_c0_g1	1762	1783	1774	-22.50	-15.20	0.675555555555556	8	1-4,1783-1780;6-13,1778-1771;14-21,1769-1762	5-5,1779-1779[SIL];x-x,1770-1770[BULt]	((((((((.((((((((.((((&)))).))))))))-))))))))	AUGGAGAAUGUCGUGGAGGGAU&AUUUAUCCAUGAU-UUUUUUAU	4	0.99999999997897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3459_c0_g1_1774_TPlot.pdf
TRINITY_DN3459_c0_g1:3319	si_a399	TRINITY_DN3459_c0_g1	3308	3328	3319	-22.60	-15.90	0.70353982300885	9	4-19,3325-3310	1-3,3328-3326[UP5];20-21,3309-3308[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGAAACAAAAUAAUUCUGACA&AUAUAGAAUUGUUUUGUUUAU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3459_c0_g1_3319_TPlot.pdf
TRINITY_DN3461_c0_g1:1244	si_s580	TRINITY_DN3461_c0_g1	1233	1260	1244	-24.40	-16.40	0.672131147540984	15.5	1-7,1260-1254;8-21,1246-1233	x-x,1253-1247[BULt]	((((((((((((((.......(((((((&)))))))-------))))))))))))))	UUGUCUGUGAUUUUUUAGGUGUUUAUUC&GAAUAAA-------AAAAUCAUGGAUAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN3461_c0_g1_1244_TPlot.pdf
TRINITY_DN3464_c0_g1:1120	si_a588	TRINITY_DN3464_c0_g1	1109	1130	1120	-29.00	-20.70	0.713793103448276	8.5	3-9,1128-1122;10-19,1120-1111	1-2,1130-1129[UP5];x-x,1121-1121[BULt];20-21,1110-1109[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	CCGAUUCUGUCCAUUUUUGUGA&UAACAAGAA-GGACAGAAUUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN3464_c0_g1_1120_TPlot.pdf
TRINITY_DN3464_c0_g1:41	si_s316	TRINITY_DN3464_c0_g1	30	50	41	-31.50	-21.30	0.676190476190476	9.5	3-4,48-47;6-13,45-38;15-21,36-30	1-2,50-49[UP5];5-5,46-46[SIL];14-14,37-37[SIL]	(((((((.((((((((.((..&..)).)))))))).)))))))	UUUGUGAGAGGAGGGGGAGUU&UUCUGUCCUUCUUGUUACAAA	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN3464_c0_g1_41_TPlot.pdf
TRINITY_DN3464_c0_g1:42	si_s315	TRINITY_DN3464_c0_g1	31	59	42	-31.60	-20.80	0.658227848101266	21	1-7,59-53;8-14,44-38;16-21,36-31	x-x,52-45[BULt];15-15,37-37[SIL]	((((((.(((((((........(((((((&)))))))--------))))))).))))))	UUGUGAGAGGAGGGGGAGUUGUGCAGAGU&AUUCUGU--------CCUUCUUGUUACAA	3	0.999999340269439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN3464_c0_g1_42_TPlot.pdf
TRINITY_DN3464_c0_g1:725	si_a501	TRINITY_DN3464_c0_g1	712	736	725	-33.50	-22.80	0.680597014925373	10	1-6,736-731;7-16,728-719;17-19,716-714	x-x,730-729[BULt];x-x,718-717[BULt];20-21,713-712[UP3]	..(((..((((((((((..((((((&))))))--))))))))))--)))..	GACCGUCGGGAAGACGACGAAGACG&CGUUUU--UCGUCUUCCU--UGGAA	2	0.999932839608669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3464_c0_g1_725_TPlot.pdf
TRINITY_DN3464_c0_g1:726	si_a500	TRINITY_DN3464_c0_g1	713	737	726	-34.40	-24.20	0.703488372093023	9	1-7,737-731;8-17,728-719;18-20,716-714	x-x,730-729[BULt];x-x,718-717[BULt];21-21,713-713[UP3]	.(((..((((((((((..(((((((&)))))))--))))))))))--))).	ACCGUCGGGAAGACGACGAAGACGA&UCGUUUU--UCGUCUUCCU--UGGA	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN3464_c0_g1_726_TPlot.pdf
TRINITY_DN3464_c0_g1:727	si_a499	TRINITY_DN3464_c0_g1	714	738	727	-35.20	-25.50	0.724431818181818	8.5	1-8,738-731;9-18,728-719;19-21,716-714	x-x,730-729[BULt];x-x,718-717[BULt]	(((..((((((((((..((((((((&))))))))--))))))))))--)))	CCGUCGGGAAGACGACGAAGACGAU&GUCGUUUU--UCGUCUUCCU--UGG	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3464_c0_g1_727_TPlot.pdf
TRINITY_DN3464_c0_g1:728	si_a498	TRINITY_DN3464_c0_g1	717	739	728	-33.50	-23.60	0.704477611940299	9.5	2-9,738-731;10-19,728-719	1-1,739-739[UP5];x-x,730-729[BULt];20-21,718-717[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	UCGGGAAGACGACGAAGACGAUC&UGUCGUUUU--UCGUCUUCCUUG	2	0.998510531359226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3464_c0_g1_728_TPlot.pdf
TRINITY_DN3464_c0_g1:731	si_a497	TRINITY_DN3464_c0_g1	718	740	731	-32.00	-23.60	0.7375	10.5	3-10,738-731;11-20,728-719	1-2,740-739[UP5];x-x,730-729[BULt];21-21,718-718[UP3]	.((((((((((..((((((((..&..))))))))--)))))))))).	CGGGAAGACGACGAAGACGAUCU&AUGUCGUUUU--UCGUCUUCCUU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3464_c0_g1_731_TPlot.pdf
TRINITY_DN3464_c0_g1:732	si_a496	TRINITY_DN3464_c0_g1	719	741	732	-32.40	-23.60	0.728395061728395	11.5	4-11,738-731;12-21,728-719	1-3,741-739[UP5];x-x,730-729[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	GGGAAGACGACGAAGACGAUCUU&UAUGUCGUUUU--UCGUCUUCCU	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3464_c0_g1_732_TPlot.pdf
TRINITY_DN3464_c0_g1:733	si_a495	TRINITY_DN3464_c0_g1	720	742	733	-31.90	-22.40	0.702194357366771	13	5-12,738-731;13-21,728-720	1-4,742-739[UP5];x-x,730-729[BULt]	(((((((((..((((((((....&....))))))))--)))))))))	GGAAGACGACGAAGACGAUCUUU&AUAUGUCGUUUU--UCGUCUUCC	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN3464_c0_g1_733_TPlot.pdf
TRINITY_DN3464_c0_g1:768	si_a67	TRINITY_DN3464_c0_g1	757	777	768	-27.20	-19.20	0.705882352941177	9	1-10,777-768;12-17,766-761	11-11,767-767[SIL];18-21,760-757[UP3]	....((((((.((((((((((&)))))))))).))))))....	CGUCGACGAUGUGAAGGGAGC&GCUUCUUUCAAAUUGUUUUUC	3	0.999916707456954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3464_c0_g1_768_TPlot.pdf
TRINITY_DN3464_c0_g1:769	si_a66	TRINITY_DN3464_c0_g1	758	778	769	-26.70	-21.60	0.808988764044944	8	1-11,778-768;13-18,766-761	12-12,767-767[SIL];19-21,760-758[UP3]	...((((((.(((((((((((&))))))))))).))))))...	GUCGACGAUGUGAAGGGAGCG&CGCUUCUUUCAAAUUGUUUUU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3464_c0_g1_769_TPlot.pdf
TRINITY_DN3464_c0_g1:770	si_a65	TRINITY_DN3464_c0_g1	759	779	770	-27.70	-21.80	0.787003610108303	6.5	1-12,779-768;14-19,766-761	13-13,767-767[SIL];20-21,760-759[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	UCGACGAUGUGAAGGGAGCGG&UCGCUUCUUUCAAAUUGUUUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN3464_c0_g1_770_TPlot.pdf
TRINITY_DN3464_c0_g1:771	si_a64	TRINITY_DN3464_c0_g1	760	780	771	-29.40	-24.50	0.833333333333333	6	1-13,780-768;15-20,766-761	14-14,767-767[SIL];21-21,760-760[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	CGACGAUGUGAAGGGAGCGGG&CUCGCUUCUUUCAAAUUGUUU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN3464_c0_g1_771_TPlot.pdf
TRINITY_DN3464_c0_g1:772	si_a63	TRINITY_DN3464_c0_g1	761	781	772	-30.20	-26.30	0.870860927152318	5	1-14,781-768;16-21,766-761	15-15,767-767[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	GACGAUGUGAAGGGAGCGGGU&ACUCGCUUCUUUCAAAUUGUU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN3464_c0_g1_772_TPlot.pdf
TRINITY_DN3464_c0_g1:773	si_a62	TRINITY_DN3464_c0_g1	762	782	773	-32.20	-25.50	0.791925465838509	5.5	2-15,781-768;17-21,766-762	1-1,782-782[UP5];16-16,767-767[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	ACGAUGUGAAGGGAGCGGGUG&GACUCGCUUCUUUCAAAUUGU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN3464_c0_g1_773_TPlot.pdf
TRINITY_DN3464_c0_g1:774	si_a61	TRINITY_DN3464_c0_g1	763	783	774	-32.90	-24.20	0.735562310030395	7.5	3-16,781-768;18-21,766-763	1-2,783-782[UP5];17-17,767-767[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	CGAUGUGAAGGGAGCGGGUGC&CGACUCGCUUCUUUCAAAUUG	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN3464_c0_g1_774_TPlot.pdf
TRINITY_DN3464_c0_g1:779	si_a56	TRINITY_DN3464_c0_g1	768	791	779	-38.90	-25.42	0.653470437017995	13	1-5,791-787;8-21,781-768	6-7,786-782[AILt]	((((((((((((((.....(((((&)))))---..))))))))))))))	UGAAGGGAGCGGGUGCCAAAUUCC&GGAGU---CGACUCGCUUCUUUCA	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN3464_c0_g1_779_TPlot.pdf
TRINITY_DN3465_c1_g1:96	si_a786	TRINITY_DN3465_c1_g1	84	105	96	-26.60	-17.50	0.657894736842105	11	3-10,103-96;11-21,94-84	1-2,105-104[UP5];x-x,95-95[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GGAGGGUGGGGUAAAUGGAGUA&UCUUCUAUUU-UUCUAUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3465_c1_g1_96_TPlot.pdf
TRINITY_DN34667_c0_g1:33	si_a351	TRINITY_DN34667_c0_g1	21	42	33	-20.50	-14.00	0.682926829268293	7	1-10,42-33;11-14,31-28;17-21,25-21	x-x,32-32[BULt];15-16,27-26[SIL]	(((((..((((.((((((((((&))))))))))-))))..)))))	AUCAAUUUAGAGAUUGGUGUUU&AAAUAUUAAU-UCUAUUUUGAU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN34667_c0_g1_33_TPlot.pdf
TRINITY_DN3466_c0_g1:4429	si_a745	TRINITY_DN3466_c0_g1	4418	4438	4429	-42.00	-29.06	0.691904761904762	10	2-9,4437-4430;14-21,4425-4418	1-1,4438-4438[UP5];10-13,4429-4426[SIL]	((((((((....((((((((.&.))))))))....))))))))	GAGGGAGGAGUUUGGCCGGGA&CCCUGGCCAUGAACCUCCUUU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN3466_c0_g1_4429_TPlot.pdf
TRINITY_DN34680_c0_g1:21	si_s69	TRINITY_DN34680_c0_g1	10	30	21	-23.40	-15.50	0.662393162393162	6.5	3-7,28-24;9-20,22-11	1-2,30-29[UP5];8-8,23-23[SIL];21-21,10-10[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AAAAGAAGAAAAAAAGAAGCU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN34680_c0_g1_21_TPlot.pdf
TRINITY_DN34680_c0_g1:22	si_s68	TRINITY_DN34680_c0_g1	11	31	22	-23.10	-15.50	0.670995670995671	7.5	4-8,28-24;10-21,22-11	1-3,31-29[UP5];9-9,23-23[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAAGAAGAAAAAAAGAAGCUU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN34680_c0_g1_22_TPlot.pdf
TRINITY_DN3468_c0_g1:1275	si_a397	TRINITY_DN3468_c0_g1	1264	1284	1275	-24.00	-15.90	0.6625	7.5	1-3,1284-1282;5-7,1280-1278;10-21,1275-1264	4-4,1281-1281[SIL];8-9,1277-1276[SIL]	((((((((((((..(((.(((&))).)))..))))))))))))	AAACAAAGCAAUGAUGUCUUC&GAAUAUAGAAUUGUUUUGUUU	3	0.999990058145084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN3468_c0_g1_1275_TPlot.pdf
TRINITY_DN3468_c1_g1:34	si_s181	TRINITY_DN3468_c1_g1	23	43	34	-34.60	-24.70	0.713872832369942	8.5	3-11,41-33;13-21,31-23	1-2,43-42[UP5];12-12,32-32[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAUGGUUGUCGCUCGGGCGGA&GAUGCCCGAGUAACGAUUAUU	0	0.0212830231324032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN3468_c1_g1_34_TPlot.pdf
TRINITY_DN3469_c0_g1:2060	si_s719	TRINITY_DN3469_c0_g1	2049	2069	2060	-32.00	-21.50	0.671875	5	2-6,2068-2064;8-21,2062-2049	1-1,2069-2069[UP5];7-7,2063-2063[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UUUGGAUAAUAUUUCUCCCUC&CAGGGAAAGAUAUUAUCUAGA	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s719_TRINITY_DN3469_c0_g1_2060_TPlot.pdf
TRINITY_DN3469_c0_g1:2062	si_s717	TRINITY_DN3469_c0_g1	2051	2071	2062	-30.10	-19.60	0.651162790697674	8.5	4-8,2068-2064;10-21,2062-2051	1-3,2071-2069[UP5];9-9,2063-2063[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UGGAUAAUAUUUCUCCCUCAG&AACAGGGAAAGAUAUUAUCUA	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN3469_c0_g1_2062_TPlot.pdf
TRINITY_DN3469_c0_g1:598	si_a225	TRINITY_DN3469_c0_g1	587	608	598	-27.50	-18.20	0.661818181818182	8.5	3-6,606-603;7-17,601-591;19-20,589-588	1-2,608-607[UP5];x-x,602-602[BULt];18-18,590-590[SIL];21-21,587-587[UP3]	.((.(((((((((((.((((..&..))))-))))))))))).)).	CUGUUUAUGGAGACAUUGAGGA&AACUCA-UGUUUCUAUAAUCAA	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN3469_c0_g1_598_TPlot.pdf
TRINITY_DN3469_c0_g1:657	si_s506	TRINITY_DN3469_c0_g1	646	666	657	-24.30	-16.20	0.666666666666667	12	5-8,662-659;10-20,657-647	1-4,666-663[UP5];9-9,658-658[SIL];21-21,646-646[UP3]	.(((((((((((.((((....&....)))).))))))))))).	AGAGGAUAUGGAUUUGUGAUA&CAAAACAAUUCUAUAUUCUUA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN3469_c0_g1_657_TPlot.pdf
TRINITY_DN3471_c0_g1:1856	si_a545	TRINITY_DN3471_c0_g1	1845	1873	1856	-28.10	-18.60	0.661921708185053	20.5	1-7,1873-1867;8-19,1858-1847	x-x,1866-1859[BULt];20-21,1846-1845[UP3]	..((((((((((((........(((((((&)))))))--------))))))))))))..	UGGAAGAAAUAGAUAAGAAGGCUGAGCUG&CGGUUCA--------AUCUAUUUCUUUAU	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN3471_c0_g1_1856_TPlot.pdf
TRINITY_DN3471_c0_g1:2801	si_s82	TRINITY_DN3471_c0_g1	2790	2811	2801	-28.90	-19.50	0.674740484429066	8	3-4,2809-2808;5-9,2806-2802;11-20,2800-2791	1-2,2811-2810[UP5];x-x,2807-2807[BULt];10-10,2801-2801[SIL];21-21,2790-2790[UP3]	.((((((((((.(((((.((..&..))-))))).)))))))))).	CAGAAGAAGAACGGAAACGAUU&UUUC-UUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3471_c0_g1_2801_TPlot.pdf
TRINITY_DN3471_c0_g1:2803	si_s80	TRINITY_DN3471_c0_g1	2792	2818	2803	-28.20	-19.50	0.691489361702128	15	1-7,2818-2812;8-11,2805-2802;13-21,2800-2792	x-x,2811-2806[BULt];12-12,2801-2801[SIL]	(((((((((.((((......(((((((&)))))))------)))).)))))))))	GAAGAAGAACGGAAACGAUUAGAGAAA&UUUUUCU------UUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3471_c0_g1_2803_TPlot.pdf
TRINITY_DN3471_c0_g1:2812	si_s77	TRINITY_DN3471_c0_g1	2795	2821	2812	-25.50	-16.70	0.654901960784314	15	1-10,2821-2812;11-14,2805-2802;16-21,2800-2795	x-x,2811-2806[BULt];15-15,2801-2801[SIL]	((((((.((((......((((((((((&))))))))))------)))).))))))	GAAGAACGGAAACGAUUAGAGAAAGAA&UUUUUUUUCU------UUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3471_c0_g1_2812_TPlot.pdf
TRINITY_DN3471_c0_g1:2888	si_a141	TRINITY_DN3471_c0_g1	2877	2897	2888	-23.80	-20.00	0.840336134453782	9.5	4-20,2894-2878	1-3,2897-2895[UP5];21-21,2877-2877[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAGAACAACAGCGGUUAGCAG&UAAUUAAUCGUUGUUGUUUUA	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3471_c0_g1_2888_TPlot.pdf
TRINITY_DN3471_c0_g1:2890	si_a139	TRINITY_DN3471_c0_g1	2879	2899	2890	-25.90	-18.90	0.72972972972973	12	6-21,2894-2879	1-5,2899-2895[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAACAACAGCGGUUAGCAGAC&AGUAAUUAAUCGUUGUUGUUU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN3471_c0_g1_2890_TPlot.pdf
TRINITY_DN3471_c0_g1:2906	si_s93	TRINITY_DN3471_c0_g1	2895	2919	2906	-34.80	-24.50	0.704022988505747	13	1-6,2919-2914;7-17,2909-2899	x-x,2913-2910[BULt];18-21,2898-2895[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CAGACGAAGCGAAGAAAGCGGAAGA&UCUUCU----UCUUCGCUUCGGAUU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3471_c0_g1_2906_TPlot.pdf
TRINITY_DN3471_c0_g1:2908	si_s91	TRINITY_DN3471_c0_g1	2897	2921	2908	-34.70	-25.80	0.743515850144092	11.5	1-8,2921-2914;9-19,2909-2899	x-x,2913-2910[BULt];20-21,2898-2897[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	GACGAAGCGAAGAAAGCGGAAGAAG&UUUCUUCU----UCUUCGCUUCGGA	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3471_c0_g1_2908_TPlot.pdf
TRINITY_DN3471_c0_g1:2910	si_s83	TRINITY_DN3471_c0_g1	2900	2920	2910	-30.90	-20.70	0.669902912621359	5	1-7,2920-2914;8-15,2912-2905;18-21,2903-2900	x-x,2913-2913[BULt];16-17,2904-2904[AILq]	((((.-((((((((.(((((((&)))))))-))))))))..))))	GAAGC-GAAGAAAGCGGAAGAA&UUCUUUC-CUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3471_c0_g1_2910_TPlot.pdf
TRINITY_DN3471_c0_g1:2914	si_s89	TRINITY_DN3471_c0_g1	2899	2923	2914	-35.30	-25.40	0.719546742209632	13	3-10,2921-2914;11-21,2909-2899	1-2,2923-2922[UP5];x-x,2913-2910[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	CGAAGCGAAGAAAGCGGAAGAAGCC&CCUUUCUUCU----UCUUCGCUUCG	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3471_c0_g1_2914_TPlot.pdf
TRINITY_DN3471_c0_g1:2917	si_s77	TRINITY_DN3471_c0_g1	2905	2926	2917	-25.50	-18.10	0.709803921568627	12	6-13,2921-2914;14-21,2912-2905	1-5,2926-2922[UP5];x-x,2913-2913[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	GAAGAAAGCGGAAGAAGCCAGA&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3471_c0_g1_2917_TPlot.pdf
TRINITY_DN3471_c0_g1:3143	si_s71	TRINITY_DN3471_c0_g1	3132	3152	3143	-25.70	-18.60	0.723735408560311	5.5	1-6,3152-3147;8-19,3145-3134	7-7,3146-3146[SIL];20-21,3133-3132[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AAGAAAGGAGAAAACUAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999829269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3471_c0_g1_3143_TPlot.pdf
TRINITY_DN3471_c0_g1:3146	si_s68	TRINITY_DN3471_c0_g1	3135	3155	3146	-23.10	-15.40	0.666666666666667	8	4-9,3152-3147;11-21,3145-3135	1-3,3155-3153[UP5];10-10,3146-3146[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAAGGAGAAAACUAGAAGAAG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3471_c0_g1_3146_TPlot.pdf
TRINITY_DN3471_c0_g1:3148	si_s77	TRINITY_DN3471_c0_g1	3131	3157	3148	-25.50	-20.60	0.807843137254902	15	1-10,3157-3148;11-21,3141-3131	x-x,3147-3142[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	GAAGAAAGGAGAAAACUAGAAGAAGAA&UUUUUUUUCU------UUCCUUUCUUC	3	0.999957295187837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3471_c0_g1_3148_TPlot.pdf
TRINITY_DN3471_c0_g1:3275	si_s85	TRINITY_DN3471_c0_g1	3264	3285	3275	-33.80	-22.40	0.662721893491124	4	1-4,3285-3282;5-12,3280-3273;14-19,3271-3266;21-21,3264-3264	x-x,3281-3281[BULt];13-13,3272-3272[SIL];20-20,3265-3265[SIL]	(.((((((.((((((((.((((&))))-)))))))).)))))).)	GGGAAGAACAAGAAAGGCAAAG&CUUU-CCUUUCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3471_c0_g1_3275_TPlot.pdf
TRINITY_DN3473_c0_g1:617	si_a418	TRINITY_DN3473_c0_g1	606	626	617	-21.20	-14.20	0.669811320754717	10	3-6,624-621;9-20,618-607	1-2,626-625[UP5];7-8,620-619[SIL];21-21,606-606[UP3]	.((((((((((((..((((..&..))))..)))))))))))).	UUCCUGUGUUUGUGAAAAUCC&AUAUUUAAAUAAAUAUAGGAU	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN3473_c0_g1_617_TPlot.pdf
TRINITY_DN34753_c0_g1:34	si_a411	TRINITY_DN34753_c0_g1	23	43	34	-17.90	-11.90	0.664804469273743	6.5	1-3,43-41;5-17,39-27	4-4,40-40[SIL];18-21,26-23[UP3]	....(((((((((((((.(((&))).)))))))))))))....	CUACGUUUAAAUAUAAAGAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.999998852950503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN34753_c0_g1_34_TPlot.pdf
TRINITY_DN34753_c0_g1:36	si_a409	TRINITY_DN34753_c0_g1	25	45	36	-19.50	-15.50	0.794871794871795	4.5	1-5,45-41;7-19,39-27	6-6,40-40[SIL];20-21,26-25[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	ACGUUUAAAUAUAAAGAAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN34753_c0_g1_36_TPlot.pdf
TRINITY_DN3475_c0_g1:221	si_s43	TRINITY_DN3475_c0_g1	210	240	221	-25.50	-16.70	0.654901960784314	23	1-8,240-233;9-21,222-210	x-x,232-223[BULt]	(((((((((((((..........((((((((&))))))))----------)))))))))))))	CUUGAAAUCUAGUUUAGUUUUGGUGUUAAAG&CUUUAAUA----------AUUGGAUUUCAAG	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN3475_c0_g1_221_TPlot.pdf
TRINITY_DN3476_c0_g1:1033	si_s71	TRINITY_DN3476_c0_g1	1022	1041	1033	-25.70	-17.38	0.676264591439689	13.5	1-5,1041-1037;12-21,1031-1022	6-11,1036-1032[AILq]	((((((((((.....-(((((&)))))......))))))))))	AGGAAGGAAGUGCAG-AGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3476_c0_g1_1033_TPlot.pdf
TRINITY_DN3476_c0_g1:1035	si_s79	TRINITY_DN3476_c0_g1	1022	1044	1035	-26.20	-19.00	0.725190839694656	8	1-10,1044-1035;11-11,1033-1033;12-21,1031-1022	x-x,1034-1034[BULt];x-x,1032-1032[BULt]	((((((((((.(.((((((((((&))))))))))-)-))))))))))	AGGAAGGAAGUGCAGAGAAGGAA&UUUUUUCUUU-C-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3476_c0_g1_1035_TPlot.pdf
TRINITY_DN3476_c0_g1:1036	si_s76	TRINITY_DN3476_c0_g1	1021	1045	1036	-23.60	-17.70	0.75	12.5	2-11,1044-1035;12-21,1030-1021	1-1,1045-1045[UP5];x-x,1034-1031[BULt]	((((((((((....((((((((((.&.))))))))))----))))))))))	AAGGAAGGAAGUGCAGAGAAGGAAA&AUUUUUUUUCU----UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3476_c0_g1_1036_TPlot.pdf
TRINITY_DN3476_c0_g1:1038	si_s74	TRINITY_DN3476_c0_g1	1023	1048	1038	-25.00	-17.50	0.7	8.5	1-7,1048-1042;8-13,1040-1035;14-21,1030-1023	x-x,1041-1041[BULt];x-x,1034-1031[BULt]	((((((((....((((((.(((((((&)))))))-))))))----))))))))	GGAAGGAAGUGCAGAGAAGGAAAUAG&CUAUUUU-UUUUCU----UUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3476_c0_g1_1038_TPlot.pdf
TRINITY_DN3476_c0_g1:1039	si_s73	TRINITY_DN3476_c0_g1	1024	1049	1039	-24.00	-16.60	0.691666666666667	8.5	1-8,1049-1042;9-14,1040-1035;15-21,1030-1024	x-x,1041-1041[BULt];x-x,1034-1031[BULt]	(((((((....((((((.((((((((&))))))))-))))))----)))))))	GAAGGAAGUGCAGAGAAGGAAAUAGA&UCUAUUUU-UUUUCU----UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3476_c0_g1_1039_TPlot.pdf
TRINITY_DN3476_c0_g1:1041	si_s72	TRINITY_DN3476_c0_g1	1021	1050	1041	-24.10	-16.40	0.680497925311203	21.5	2-12,1049-1039;13-21,1029-1021	1-1,1050-1050[UP5];x-x,1038-1030[BULt]	(((((((((.........(((((((((((.&.)))))))))))---------)))))))))	AAGGAAGGAAGUGCAGAGAAGGAAAUAGAU&UUCUAUUUUUUU---------UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3476_c0_g1_1041_TPlot.pdf
TRINITY_DN3476_c0_g1:1068	si_a497	TRINITY_DN3476_c0_g1	1058	1077	1068	-32.00	-21.70	0.678125	6	2-2,1076-1076;4-13,1074-1065;15-21,1064-1058	1-1,1077-1077[UP5];3-3,1075-1075[SIL];14-14,x-x[BULq]	(((((((-((((((((((.(.&.).)))))))))).)))))))	AGGGAAG-UGAAGAACGAGAA&AUGUCGUUUUUCGUCUUCCUU	4	0.99999999999921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3476_c0_g1_1068_TPlot.pdf
TRINITY_DN3476_c0_g1:1070	si_s90	TRINITY_DN3476_c0_g1	1059	1079	1070	-35.30	-23.50	0.6657223796034	6.5	1-7,1079-1073;9-19,1071-1061	8-8,1072-1072[SIL];20-21,1060-1059[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GGGAAGUGAAGAACGAGAAGG&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3476_c0_g1_1070_TPlot.pdf
TRINITY_DN3476_c0_g1:1071	si_s89	TRINITY_DN3476_c0_g1	1060	1080	1071	-35.30	-23.70	0.671388101983003	6.5	2-8,1079-1073;10-20,1071-1061	1-1,1080-1080[UP5];9-9,1072-1072[SIL];21-21,1060-1060[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	GGAAGUGAAGAACGAGAAGGC&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999999845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3476_c0_g1_1071_TPlot.pdf
TRINITY_DN3476_c0_g1:1126	si_s71	TRINITY_DN3476_c0_g1	1115	1134	1126	-25.70	-17.38	0.676264591439689	13.5	1-5,1134-1130;12-21,1124-1115	6-11,1129-1125[AILq]	((((((((((.....-(((((&)))))......))))))))))	AGGAAGGAAGUGCAG-AGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3476_c0_g1_1126_TPlot.pdf
TRINITY_DN3476_c0_g1:1128	si_s77	TRINITY_DN3476_c0_g1	1113	1137	1128	-25.50	-17.70	0.694117647058824	12.5	1-10,1137-1128;11-20,1123-1114	x-x,1127-1124[BULt];21-21,1113-1113[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	CAAGGAAGGAAGUGCAGAGAAGGAA&UUUUUUUUCU----UUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3476_c0_g1_1128_TPlot.pdf
TRINITY_DN3476_c0_g1:1129	si_s76	TRINITY_DN3476_c0_g1	1114	1138	1129	-23.60	-17.70	0.75	12.5	2-11,1137-1128;12-21,1123-1114	1-1,1138-1138[UP5];x-x,1127-1124[BULt]	((((((((((....((((((((((.&.))))))))))----))))))))))	AAGGAAGGAAGUGCAGAGAAGGAAG&AUUUUUUUUCU----UUCCUUUCUU	2	0.999999999661214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3476_c0_g1_1129_TPlot.pdf
TRINITY_DN3476_c0_g1:1130	si_s70	TRINITY_DN3476_c0_g1	1116	1139	1130	-25.80	-17.80	0.689922480620155	12	1-6,1139-1134;8-12,1132-1128;13-21,1124-1116	7-7,1133-1133[SIL];x-x,1127-1125[BULt]	(((((((((...(((((.((((((&)))))).)))))---)))))))))	GGAAGGAAGUGCAGAGAAGGAAGU&ACUUCUAUUUUU---UUUCUUUCC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3476_c0_g1_1130_TPlot.pdf
TRINITY_DN3476_c0_g1:1131	si_s74	TRINITY_DN3476_c0_g1	1116	1141	1131	-25.00	-17.50	0.7	9.5	1-7,1141-1135;8-13,1133-1128;14-21,1123-1116	x-x,1134-1134[BULt];x-x,1127-1124[BULt]	((((((((....((((((.(((((((&)))))))-))))))----))))))))	GGAAGGAAGUGCAGAGAAGGAAGUAG&CUAUUUU-UUUUCU----UUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3476_c0_g1_1131_TPlot.pdf
TRINITY_DN3476_c0_g1:1132	si_s73	TRINITY_DN3476_c0_g1	1117	1142	1132	-24.00	-16.60	0.691666666666667	9.5	1-8,1142-1135;9-14,1133-1128;15-21,1123-1117	x-x,1134-1134[BULt];x-x,1127-1124[BULt]	(((((((....((((((.((((((((&))))))))-))))))----)))))))	GAAGGAAGUGCAGAGAAGGAAGUAGA&UCUAUUUU-UUUUCU----UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3476_c0_g1_1132_TPlot.pdf
TRINITY_DN3476_c0_g1:1158	si_s80	TRINITY_DN3476_c0_g1	1147	1167	1158	-28.20	-18.90	0.670212765957447	5.5	1-9,1167-1159;11-20,1157-1148	10-10,1158-1158[SIL];21-21,1147-1147[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AAAGAGGGAAGUGAAGAAAAG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3476_c0_g1_1158_TPlot.pdf
TRINITY_DN3476_c0_g1:1159	si_s79	TRINITY_DN3476_c0_g1	1148	1168	1159	-26.20	-19.00	0.725190839694656	6	2-10,1167-1159;12-21,1157-1148	1-1,1168-1168[UP5];11-11,1158-1158[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AAGAGGGAAGUGAAGAAAAGC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3476_c0_g1_1159_TPlot.pdf
TRINITY_DN3476_c0_g1:1164	si_s74	TRINITY_DN3476_c0_g1	1153	1174	1164	-25.00	-16.80	0.672	6	1-6,1174-1169;7-15,1167-1159;17-21,1157-1153	x-x,1168-1168[BULt];16-16,1158-1158[SIL]	(((((.(((((((((.((((((&))))))-))))))))).)))))	GGAAGUGAAGAAAAGCAGAUAG&CUAUUU-UUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3476_c0_g1_1164_TPlot.pdf
TRINITY_DN3476_c0_g1:1185	si_s70	TRINITY_DN3476_c0_g1	1174	1193	1185	-25.80	-16.90	0.655038759689922	8	1-8,1193-1186;11-18,1184-1177;20-21,1175-1174	9-10,1185-1185[AILq];19-19,1176-1176[SIL]	((.((((((((.-((((((((&))))))))..)))))))).))	GGUAAGGGAGAU-GUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3476_c0_g1_1185_TPlot.pdf
TRINITY_DN3476_c0_g1:1186	si_a554	TRINITY_DN3476_c0_g1	1175	1195	1186	-34.40	-22.80	0.662790697674419	8	1-8,1195-1188;10-17,1186-1179	9-9,1187-1187[SIL];18-21,1178-1175[UP3]	....((((((((.((((((((&)))))))).))))))))....	GUAAGGGAGAUGUAGAAGUAG&CUAUUUCUUUAUCUCCCCGUG	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN3476_c0_g1_1186_TPlot.pdf
TRINITY_DN3476_c0_g1:1187	si_a553	TRINITY_DN3476_c0_g1	1176	1196	1187	-33.70	-24.20	0.718100890207715	7	1-9,1196-1188;11-18,1186-1179	10-10,1187-1187[SIL];19-21,1178-1176[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAAGGGAGAUGUAGAAGUAGA&UCUAUUUCUUUAUCUCCCCGU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN3476_c0_g1_1187_TPlot.pdf
TRINITY_DN3476_c0_g1:1188	si_a552	TRINITY_DN3476_c0_g1	1177	1197	1188	-33.10	-25.50	0.770392749244713	6	1-10,1197-1188;12-19,1186-1179	11-11,1187-1187[SIL];20-21,1178-1177[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AAGGGAGAUGUAGAAGUAGAU&AUCUAUUUCUUUAUCUCCCCG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN3476_c0_g1_1188_TPlot.pdf
TRINITY_DN3476_c0_g1:1192	si_a548	TRINITY_DN3476_c0_g1	1181	1201	1192	-27.20	-19.10	0.702205882352941	9.5	5-14,1197-1188;16-21,1186-1181	1-4,1201-1198[UP5];15-15,1187-1187[SIL]	((((((.((((((((((....&....)))))))))).))))))	GAGAUGUAGAAGUAGAUAAAG&UUCAAUCUAUUUCUUUAUCUC	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN3476_c0_g1_1192_TPlot.pdf
TRINITY_DN3476_c0_g1:704	si_s77	TRINITY_DN3476_c0_g1	693	713	704	-25.50	-16.78	0.658039215686275	5.5	1-10,713-704;14-21,700-693	11-13,703-701[SIL]	((((((((...((((((((((&))))))))))...))))))))	GAAGGAAGUGUAGAAAAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3476_c0_g1_704_TPlot.pdf
TRINITY_DN3476_c0_g1:891	si_s71	TRINITY_DN3476_c0_g1	880	899	891	-25.70	-17.38	0.676264591439689	13.5	1-5,899-895;12-21,889-880	6-11,894-890[AILq]	((((((((((.....-(((((&)))))......))))))))))	AGGAAGGAAGUGCAG-AGAAG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3476_c0_g1_891_TPlot.pdf
TRINITY_DN3476_c0_g1:893	si_s79	TRINITY_DN3476_c0_g1	880	902	893	-26.20	-19.00	0.725190839694656	8	1-10,902-893;11-11,891-891;12-21,889-880	x-x,892-892[BULt];x-x,890-890[BULt]	((((((((((.(.((((((((((&))))))))))-)-))))))))))	AGGAAGGAAGUGCAGAGAAGGAA&UUUUUUCUUU-C-CUUUCUUCUU	2	0.999999999961149	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3476_c0_g1_893_TPlot.pdf
TRINITY_DN3476_c0_g1:894	si_s76	TRINITY_DN3476_c0_g1	879	903	894	-23.60	-17.70	0.75	12.5	2-11,902-893;12-21,888-879	1-1,903-903[UP5];x-x,892-889[BULt]	((((((((((....((((((((((.&.))))))))))----))))))))))	AAGGAAGGAAGUGCAGAGAAGGAAG&AUUUUUUUUCU----UUCCUUUCUU	2	0.999999999786239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3476_c0_g1_894_TPlot.pdf
TRINITY_DN3476_c0_g1:896	si_s74	TRINITY_DN3476_c0_g1	881	906	896	-25.00	-17.50	0.7	9.5	1-7,906-900;8-13,898-893;14-21,888-881	x-x,899-899[BULt];x-x,892-889[BULt]	((((((((....((((((.(((((((&)))))))-))))))----))))))))	GGAAGGAAGUGCAGAGAAGGAAGUAG&CUAUUUU-UUUUCU----UUCCUUUC	2	0.999999999513952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3476_c0_g1_896_TPlot.pdf
TRINITY_DN3476_c0_g1:897	si_s73	TRINITY_DN3476_c0_g1	882	907	897	-24.00	-16.60	0.691666666666667	9.5	1-8,907-900;9-14,898-893;15-21,888-882	x-x,899-899[BULt];x-x,892-889[BULt]	(((((((....((((((.((((((((&))))))))-))))))----)))))))	GAAGGAAGUGCAGAGAAGGAAGUAGA&UCUAUUUU-UUUUCU----UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3476_c0_g1_897_TPlot.pdf
TRINITY_DN3476_c0_g1:925	si_a498	TRINITY_DN3476_c0_g1	915	934	925	-33.50	-22.20	0.662686567164179	6.5	1-1,934-934;3-12,932-923;14-20,922-916	2-2,933-933[SIL];13-13,x-x[BULq];21-21,915-915[UP3]	.(((((((-((((((((((.(&).)))))))))).))))))).	GAGGGAAG-UGAAGAACGAGA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999999832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3476_c0_g1_925_TPlot.pdf
TRINITY_DN3476_c0_g1:926	si_a497	TRINITY_DN3476_c0_g1	916	935	926	-32.00	-21.70	0.678125	6	2-2,934-934;4-13,932-923;15-21,922-916	1-1,935-935[UP5];3-3,933-933[SIL];14-14,x-x[BULq]	(((((((-((((((((((.(.&.).)))))))))).)))))))	AGGGAAG-UGAAGAACGAGAA&AUGUCGUUUUUCGUCUUCCUU	3	0.99999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3476_c0_g1_926_TPlot.pdf
TRINITY_DN3476_c0_g1:927	si_s71	TRINITY_DN3476_c0_g1	916	936	927	-25.70	-18.30	0.712062256809339	7	1-5,936-932;8-13,929-924;15-21,922-916	6-7,931-930[SIL];14-14,923-923[SIL]	(((((((.((((((..(((((&)))))..)))))).)))))))	AGGGAAGUGAAGAACGAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3476_c0_g1_927_TPlot.pdf
TRINITY_DN3476_c0_g1:928	si_s90	TRINITY_DN3476_c0_g1	917	937	928	-35.30	-23.50	0.6657223796034	6.5	1-7,937-931;9-19,929-919	8-8,930-930[SIL];20-21,918-917[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GGGAAGUGAAGAACGAGAAGG&CUUUCUUCUUCUUCGCUUCGG	2	0.999999992579414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3476_c0_g1_928_TPlot.pdf
TRINITY_DN3476_c0_g1:929	si_s89	TRINITY_DN3476_c0_g1	918	938	929	-35.30	-23.70	0.671388101983003	6.5	2-8,937-931;10-20,929-919	1-1,938-938[UP5];9-9,930-930[SIL];21-21,918-918[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	GGAAGUGAAGAACGAGAAGGC&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999999818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3476_c0_g1_929_TPlot.pdf
TRINITY_DN34772_c0_g1:70	si_a793	TRINITY_DN34772_c0_g1	59	78	70	-28.50	-19.90	0.698245614035088	9.5	1-7,78-72;9-19,71-61	8-8,x-x[BULq];20-21,60-59[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	UAGGGUUGGAGGG-AGAGAGA&UUUUUCUAUUUUCCAAUCCGA	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN34772_c0_g1_70_TPlot.pdf
TRINITY_DN34772_c0_g1:71	si_a792	TRINITY_DN34772_c0_g1	60	79	71	-27.60	-19.90	0.721014492753623	9.5	2-8,78-72;10-20,71-61	1-1,79-79[UP5];9-9,x-x[BULq];21-21,60-60[UP3]	.(((((((((((-(((((((.&.))))))).))))))))))).	AGGGUUGGAGGG-AGAGAGAG&AUUUUUCUAUUUUCCAAUCCG	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN34772_c0_g1_71_TPlot.pdf
TRINITY_DN34772_c0_g1:76	si_s75	TRINITY_DN34772_c0_g1	65	85	76	-24.00	-23.50	0.979166666666667	7	1-20,85-66	21-21,65-65[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UGGAGGGAGAGAGAGAGAGUG&UAUUUUUUUUCUUUCCUUUCU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN34772_c0_g1_76_TPlot.pdf
TRINITY_DN347_c0_g1:1085	si_a142	TRINITY_DN347_c0_g1	1074	1094	1085	-23.50	-15.70	0.668085106382979	10.5	1-5,1094-1090;7-17,1088-1078	6-6,1089-1089[SIL];18-21,1077-1074[UP3]	....(((((((((((.(((((&))))).)))))))))))....	AUGCAGCGGCAGCGACUGGUU&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN347_c0_g1_1085_TPlot.pdf
TRINITY_DN347_c0_g1:1086	si_a141	TRINITY_DN347_c0_g1	1075	1095	1086	-23.80	-16.50	0.69327731092437	10	1-6,1095-1090;8-18,1088-1078	7-7,1089-1089[SIL];19-21,1077-1075[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UGCAGCGGCAGCGACUGGUUG&UAAUUAAUCGUUGUUGUUUUA	2	0.999735944309267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN347_c0_g1_1086_TPlot.pdf
TRINITY_DN347_c0_g1:1832	si_a870	TRINITY_DN347_c0_g1	1820	1841	1832	-24.80	-16.60	0.669354838709677	10	3-5,1839-1837;7-10,1835-1832;11-21,1830-1820	1-2,1841-1840[UP5];6-6,1836-1836[SIL];x-x,1831-1831[BULt]	(((((((((((.((((.(((..&..))).))))-)))))))))))	GUUGCAGCUAAGGUCUCUGAAG&UAUUAAAGAU-UUAGUUGCAAU	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN347_c0_g1_1832_TPlot.pdf
TRINITY_DN347_c0_g1:1978	si_s73	TRINITY_DN347_c0_g1	1967	1987	1978	-24.00	-16.00	0.666666666666667	6	1-16,1987-1972	17-21,1971-1967[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUAAAAAGAAAGAAAAUAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN347_c0_g1_1978_TPlot.pdf
TRINITY_DN347_c0_g1:1979	si_s72	TRINITY_DN347_c0_g1	1968	1988	1979	-24.10	-16.90	0.701244813278008	5	1-17,1988-1972	18-21,1971-1968[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUAAAAAGAAAGAAAAUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN347_c0_g1_1979_TPlot.pdf
TRINITY_DN347_c0_g1:1983	si_s68	TRINITY_DN347_c0_g1	1972	1992	1983	-23.10	-17.10	0.74025974025974	7.5	5-21,1988-1972	1-4,1992-1989[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAAAGAAAAUAGAAAAGA&CAACUUCUAUUUUUUUUCUUU	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN347_c0_g1_1983_TPlot.pdf
TRINITY_DN347_c0_g1:2670	si_a786	TRINITY_DN347_c0_g1	2659	2682	2670	-26.60	-17.44	0.655639097744361	9.5	1-6,2682-2677;8-15,2672-2665;17-21,2663-2659	7-7,2676-2673[AILt];16-16,2664-2664[SIL]	(((((.((((((((....((((((&))))))---.)))))))).)))))	GGAAAUUGGAAAAAAUUGAGAAGA&UCUUCU---AUUUUUCUAUUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN347_c0_g1_2670_TPlot.pdf
TRINITY_DN347_c0_g1:2671	si_a785	TRINITY_DN347_c0_g1	2660	2683	2671	-25.90	-16.94	0.654054054054054	9.5	1-7,2683-2677;9-16,2672-2665;18-21,2663-2660	8-8,2676-2673[AILt];17-17,2664-2664[SIL]	((((.((((((((....(((((((&)))))))---.)))))))).))))	GAAAUUGGAAAAAAUUGAGAAGAG&CUCUUCU---AUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN347_c0_g1_2671_TPlot.pdf
TRINITY_DN347_c0_g1:2852	si_a761	TRINITY_DN347_c0_g1	2834	2861	2852	-30.10	-19.70	0.654485049833887	10.5	1-5,2861-2857;7-14,2855-2848;15-21,2840-2834	6-6,2856-2856[SIL];x-x,2847-2841[BULt]	(((((((.......((((((((.(((((&))))).))))))))-------)))))))	AAUCGAUAAGACUGCAAAAACCGGAAGG&CCUUUGGGUUUUUG-------AUUGAUU	4	0.999999999952959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN347_c0_g1_2852_TPlot.pdf
TRINITY_DN347_c0_g1:3433	si_a494	TRINITY_DN347_c0_g1	3421	3442	3433	-29.50	-20.40	0.691525423728814	11	4-12,3439-3431;13-21,3429-3421	1-3,3442-3440[UP5];x-x,3430-3430[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GAAGGCGAGAAAAUGGCGUUCU&AAUAUGUCGUUU-UUCGUCUUC	3	0.999998837114586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN347_c0_g1_3433_TPlot.pdf
TRINITY_DN347_c0_g1:3577	si_s430	TRINITY_DN347_c0_g1	3566	3586	3577	-21.30	-15.10	0.708920187793427	7.5	3-9,3584-3578;11-21,3576-3566	1-2,3586-3585[UP5];10-10,3577-3577[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	UGGUGUGUAAUGAUUGUUGAU&UAUAACAAUAAUUACAUAUUA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN347_c0_g1_3577_TPlot.pdf
TRINITY_DN347_c0_g1:3578	si_s429	TRINITY_DN347_c0_g1	3567	3587	3578	-21.10	-13.90	0.658767772511848	9.5	4-10,3584-3578;12-21,3576-3567	1-3,3587-3585[UP5];11-11,3577-3577[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GGUGUGUAAUGAUUGUUGAUU&AUAUAACAAUAAUUACAUAUU	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN347_c0_g1_3578_TPlot.pdf
TRINITY_DN347_c0_g1:606	si_a151	TRINITY_DN347_c0_g1	595	615	606	-28.90	-19.70	0.681660899653979	7.5	1-10,615-606;13-20,603-596	11-12,605-604[SIL];21-21,595-595[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	CGGUUGGCUCAAAAACAGCAA&UUGUUGUUUUAAGGUCAAUCU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN347_c0_g1_606_TPlot.pdf
TRINITY_DN347_c0_g1:607	si_a150	TRINITY_DN347_c0_g1	596	616	607	-29.90	-22.90	0.765886287625418	5.5	1-11,616-606;14-21,603-596	12-13,605-604[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GGUUGGCUCAAAAACAGCAAC&GUUGUUGUUUUAAGGUCAAUC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN347_c0_g1_607_TPlot.pdf
TRINITY_DN347_c0_g1:608	si_a149	TRINITY_DN347_c0_g1	597	617	608	-29.40	-20.60	0.700680272108844	5.5	2-12,616-606;15-21,603-597	1-1,617-617[UP5];13-14,605-604[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	GUUGGCUCAAAAACAGCAACA&CGUUGUUGUUUUAAGGUCAAU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN347_c0_g1_608_TPlot.pdf
TRINITY_DN34819_c0_g1:385	si_a310	TRINITY_DN34819_c0_g1	366	394	385	-33.70	-22.00	0.652818991097923	22	2-12,393-383;13-21,374-366	1-1,394-394[UP5];x-x,382-375[BULt]	(((((((((........(((((((((((.&.)))))))))))--------)))))))))	GUUAUGGAUUCAUAGACGGGUCCAAGUGG&UCGCUUGGAUUU--------AUCCAUGAU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN34819_c0_g1_385_TPlot.pdf
TRINITY_DN3482_c0_g1:2075	si_s491	TRINITY_DN3482_c0_g1	2064	2084	2075	-19.50	-13.00	0.666666666666667	6	2-9,2083-2076;11-20,2074-2065	1-1,2084-2084[UP5];10-10,2075-2075[SIL];21-21,2064-2064[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UUUUUGUUUAUUUUUAGAUGU&UUAUUUAAAUAUAAACAAAAC	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN3482_c0_g1_2075_TPlot.pdf
TRINITY_DN34840_c0_g1:451	si_a884	TRINITY_DN34840_c0_g1	440	460	451	-25.60	-18.50	0.72265625	6.5	3-19,458-442	1-2,460-459[UP5];20-21,441-440[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAAUUAUUAUAUUGAUUGUUG&UUGCAAUCAAUAUAGUAAUAA	0	0.0183407140668357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN34840_c0_g1_451_TPlot.pdf
TRINITY_DN34840_c0_g1:452	si_a883	TRINITY_DN34840_c0_g1	441	461	452	-27.20	-20.50	0.753676470588235	5.5	1-2,461-460;4-20,458-442	3-3,459-459[SIL];21-21,441-441[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	AAUUAUUAUAUUGAUUGUUGC&GUUGCAAUCAAUAUAGUAAUA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN34840_c0_g1_452_TPlot.pdf
TRINITY_DN34840_c0_g1:454	si_a881	TRINITY_DN34840_c0_g1	443	463	454	-27.80	-19.10	0.68705035971223	7.5	3-4,461-460;6-21,458-443	1-2,463-462[UP5];5-5,459-459[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	UUAUUAUAUUGAUUGUUGCAU&UAGUUGCAAUCAAUAUAGUAA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN34840_c0_g1_454_TPlot.pdf
TRINITY_DN34840_c0_g1:455	si_a880	TRINITY_DN34840_c0_g1	444	464	455	-27.80	-18.30	0.658273381294964	9.5	4-5,461-460;7-21,458-444	1-3,464-462[UP5];6-6,459-459[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	UAUUAUAUUGAUUGUUGCAUA&UUAGUUGCAAUCAAUAUAGUA	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN34840_c0_g1_455_TPlot.pdf
TRINITY_DN3484_c0_g1:270	si_s809	TRINITY_DN3484_c0_g1	258	279	270	-28.50	-20.30	0.712280701754386	9.5	1-10,279-270;11-16,268-263	x-x,269-269[BULt];17-21,262-258[UP3]	.....((((((.((((((((((&))))))))))-)))))).....	AUGAUGAAGGGCGUGACGAAGA&UCUUCGUUAC-CUUUUCUUAAU	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3484_c0_g1_270_TPlot.pdf
TRINITY_DN3485_c0_g1:571	si_s64	TRINITY_DN3485_c0_g1	560	585	571	-24.10	-15.70	0.651452282157676	15.5	3-7,583-579;8-21,573-560	1-2,585-584[UP5];x-x,578-574[BULt]	((((((((((((((.....(((((..&..)))))-----))))))))))))))	AAAAAGAAUGGAGGAUAUAUUGCUCU&UUAGCAA-----CUUCUAUUUUUUUU	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3485_c0_g1_571_TPlot.pdf
TRINITY_DN3485_c0_g1:584	si_a640	TRINITY_DN3485_c0_g1	573	594	584	-24.10	-15.90	0.659751037344398	9	1-5,594-590;6-7,588-587;10-21,584-573	x-x,589-589[BULt];8-9,586-585[SIL]	((((((((((((..((.(((((&)))))-))..))))))))))))	GAUAUAUUGCUCUUAACAGGUU&GAUUU-UUUUGAGUAAUAUAUC	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN3485_c0_g1_584_TPlot.pdf
TRINITY_DN3485_c0_g1:653	si_s91	TRINITY_DN3485_c0_g1	636	662	653	-34.70	-23.24	0.669740634005764	10.5	1-15,662-648;18-21,639-636	16-17,647-640[AILt]	((((........(((((((((((((((&)))))))))))))))------..))))	UCCGUCAUCUUUGUGGAGGAGAAGAAA&UUUCUUCUUCUUCGC------UUCGGA	4	0.999999999999713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3485_c0_g1_653_TPlot.pdf
TRINITY_DN3486_c0_g1:1452	si_s797	TRINITY_DN3486_c0_g1	1440	1461	1452	-30.00	-20.70	0.69	8	3-15,1459-1447;16-20,1445-1441	1-2,1461-1460[UP5];x-x,1446-1446[BULt];21-21,1440-1440[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	AAGCGACGGAUGAAAUGCGAAU&GCUCGUAUUUUAUCU-UCGUUA	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3486_c0_g1_1452_TPlot.pdf
TRINITY_DN3486_c0_g1:1453	si_s796	TRINITY_DN3486_c0_g1	1441	1462	1453	-30.30	-20.40	0.673267326732673	9	4-16,1459-1447;17-21,1445-1441	1-3,1462-1460[UP5];x-x,1446-1446[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	AGCGACGGAUGAAAUGCGAAUU&AGCUCGUAUUUUAUCU-UCGUU	3	0.999967834400078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3486_c0_g1_1453_TPlot.pdf
TRINITY_DN3487_c0_g1:175	si_a775	TRINITY_DN3487_c0_g1	163	184	175	-27.20	-17.70	0.650735294117647	10	3-13,182-172;14-16,170-168	1-2,184-183[UP5];x-x,171-171[BULt];17-21,167-163[UP3]	.....(((.(((((((((((..&..)))))))))))-))).....	CCAACGAACGAGUUGAGUCACG&AUUGAUUCAACUC-UUCUAUUU	4	0.999994304191659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN3487_c0_g1_175_TPlot.pdf
TRINITY_DN3487_c0_g1:3460	si_a57	TRINITY_DN3487_c0_g1	3449	3469	3460	-36.60	-25.40	0.693989071038251	6	1-3,3469-3467;6-15,3464-3455;17-21,3453-3449	4-5,3466-3465[SIL];16-16,3454-3454[SIL]	(((((.((((((((((..(((&)))..)))))))))).)))))	UUGGACGAGGCGAGUCUCCUC&GAGUCGACUCGCUUCUUUCAA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN3487_c0_g1_3460_TPlot.pdf
TRINITY_DN3487_c0_g1:3508	si_a69	TRINITY_DN3487_c0_g1	3497	3516	3508	-24.00	-15.70	0.654166666666667	9.5	1-8,3516-3509;11-19,3507-3499	9-10,3508-3508[AILq];20-21,3498-3497[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	CGGAGAAACAGC-UGGGAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3487_c0_g1_3508_TPlot.pdf
TRINITY_DN3487_c0_g1:3509	si_a68	TRINITY_DN3487_c0_g1	3498	3517	3509	-25.40	-18.60	0.732283464566929	8.5	1-9,3517-3509;12-20,3507-3499	10-11,3508-3508[AILq];21-21,3498-3498[UP3]	.(((((((((.-(((((((((&)))))))))..))))))))).	GGAGAAACAGC-UGGGAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3487_c0_g1_3509_TPlot.pdf
TRINITY_DN3487_c0_g1:3512	si_s93	TRINITY_DN3487_c0_g1	3493	3521	3512	-34.80	-23.20	0.666666666666667	11.5	1-11,3521-3511;12-14,3508-3506;15-21,3499-3493	x-x,3510-3509[BULt];x-x,3505-3500[BULt]	(((((((......(((..(((((((((((&)))))))))))--)))------)))))))	AAUCCGGAGAAACAGCUGGGAGAAGAAGA&UCUUCUUCUUC--GCU------UCGGAUU	3	0.999999999951334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3487_c0_g1_3512_TPlot.pdf
TRINITY_DN3487_c0_g1:3688	si_a571	TRINITY_DN3487_c0_g1	3677	3697	3688	-31.20	-20.50	0.657051282051282	7	1-11,3697-3687;14-19,3684-3679	12-13,3686-3685[SIL];20-21,3678-3677[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	AAUACGAGGUUACGGUUCACG&CGUGAAUCGUAUGUUUGUAAC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a571_TRINITY_DN3487_c0_g1_3688_TPlot.pdf
TRINITY_DN3487_c0_g1:3689	si_a570	TRINITY_DN3487_c0_g1	3678	3698	3689	-31.90	-20.80	0.652037617554859	6	2-12,3697-3687;15-20,3684-3679	1-1,3698-3698[UP5];13-14,3686-3685[SIL];21-21,3678-3678[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	AUACGAGGUUACGGUUCACGU&CCGUGAAUCGUAUGUUUGUAA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN3487_c0_g1_3689_TPlot.pdf
TRINITY_DN3487_c0_g1:3708	si_a409	TRINITY_DN3487_c0_g1	3697	3717	3708	-19.50	-12.70	0.651282051282051	10.5	1-9,3717-3709;11-16,3707-3702;18-20,3700-3698	10-10,3708-3708[SIL];17-17,3701-3701[SIL];21-21,3697-3697[UP3]	.(((.((((((.(((((((((&))))))))).)))))).))).	GUGUGUGAGUGAGAGCGAGAC&GUUUUGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3487_c0_g1_3708_TPlot.pdf
TRINITY_DN3487_c0_g1:3773	si_s78	TRINITY_DN3487_c0_g1	3762	3782	3773	-26.20	-17.30	0.66030534351145	9.5	1-4,3782-3779;7-17,3776-3766;20-21,3763-3762	5-6,3778-3777[SIL];18-19,3765-3764[SIL]	((..(((((((((((..((((&))))..)))))))))))..))	GGUUGAAGGGGAAGAUCGAAG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3487_c0_g1_3773_TPlot.pdf
TRINITY_DN3487_c0_g1:3775	si_s76	TRINITY_DN3487_c0_g1	3764	3784	3775	-23.60	-15.90	0.673728813559322	12	3-6,3782-3779;9-19,3776-3766	1-2,3784-3783[UP5];7-8,3778-3777[SIL];20-21,3765-3764[UP3]	..(((((((((((..((((..&..))))..)))))))))))..	UUGAAGGGGAAGAUCGAAGCG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3487_c0_g1_3775_TPlot.pdf
TRINITY_DN3487_c0_g1:3776	si_s75	TRINITY_DN3487_c0_g1	3765	3785	3776	-24.00	-15.90	0.6625	13	4-7,3782-3779;10-20,3776-3766	1-3,3785-3783[UP5];8-9,3778-3777[SIL];21-21,3765-3765[UP3]	.(((((((((((..((((...&...))))..))))))))))).	UGAAGGGGAAGAUCGAAGCGA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3487_c0_g1_3776_TPlot.pdf
TRINITY_DN3487_c0_g1:3816	si_a494	TRINITY_DN3487_c0_g1	3805	3825	3816	-29.50	-20.10	0.68135593220339	10	4-8,3822-3818;10-12,3816-3814;14-21,3812-3805	1-3,3825-3823[UP5];9-9,3817-3817[SIL];13-13,3813-3813[SIL]	((((((((.(((.(((((...&...))))).))).))))))))	GGAGACGGUGAAGGACAUCGA&AAUAUGUCGUUUUUCGUCUUC	3	0.999999984089789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN3487_c0_g1_3816_TPlot.pdf
TRINITY_DN3487_c0_g1:3827	si_a324	TRINITY_DN3487_c0_g1	3814	3836	3827	-27.50	-18.80	0.683636363636364	6.5	1-13,3836-3824;14-15,3822-3821;16-20,3819-3815	x-x,3823-3823[BULt];x-x,3820-3820[BULt];21-21,3814-3814[UP3]	.(((((.((.(((((((((((((&)))))))))))))-))-))))).	GAAGGACAUCGAGAAAGUCGUGG&CCAUGAUUUUUUU-AU-UCCUUG	2	0.987487715898913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN3487_c0_g1_3827_TPlot.pdf
TRINITY_DN3487_c0_g1:3828	si_a323	TRINITY_DN3487_c0_g1	3815	3837	3828	-26.80	-18.30	0.682835820895522	6.5	2-14,3836-3824;15-16,3822-3821;17-21,3819-3815	1-1,3837-3837[UP5];x-x,3823-3823[BULt];x-x,3820-3820[BULt]	(((((.((.(((((((((((((.&.)))))))))))))-))-)))))	AAGGACAUCGAGAAAGUCGUGGC&UCCAUGAUUUUUUU-AU-UCCUU	2	0.998182325710981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3487_c0_g1_3828_TPlot.pdf
TRINITY_DN3488_c0_g1:2609	si_s533	TRINITY_DN3488_c0_g1	2598	2618	2609	-28.80	-19.80	0.6875	10.5	4-5,2615-2614;8-20,2611-2599	1-3,2618-2616[UP5];6-7,2613-2612[SIL];21-21,2598-2598[UP3]	.(((((((((((((..((...&...))..))))))))))))).	AUGAUUGGAUCAAAUUUGUCA&AAUCAUUUUUGAUCCGAUCAA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN3488_c0_g1_2609_TPlot.pdf
TRINITY_DN3488_c0_g1:811	si_s696	TRINITY_DN3488_c0_g1	800	820	811	-26.30	-17.70	0.673003802281369	7.5	1-12,820-809;14-15,807-806;18-21,803-800	13-13,808-808[SIL];16-17,805-804[SIL]	((((..((.((((((((((((&)))))))))))).))..))))	CACUUUUGCGUCGAUUGGUUA&UAAUUAGUCGAUUUAUUAGUG	2	0.911698574034005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN3488_c0_g1_811_TPlot.pdf
TRINITY_DN348_c0_g1:168	si_s360	TRINITY_DN348_c0_g1	157	176	168	-34.00	-22.40	0.658823529411765	6.5	1-5,176-172;7-8,171-170;10-20,168-158	6-6,x-x[BULq];9-9,169-169[SIL];21-21,157-157[UP3]	.(((((((((((.((-(((((&))))).)).))))))))))).	AUGAUCGGUUCAUUC-GUUUC&GAAAUAGAUUGAACCGAUCGC	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s360_TRINITY_DN348_c0_g1_168_TPlot.pdf
TRINITY_DN348_c0_g1:170	si_s358	TRINITY_DN348_c0_g1	159	178	170	-30.70	-21.70	0.706840390879479	8	3-7,176-172;9-10,171-170;12-21,168-159	1-2,178-177[UP5];8-8,x-x[BULq];11-11,169-169[SIL]	((((((((((.((-(((((..&..))))).)).))))))))))	GAUCGGUUCAUUC-GUUUCGU&AAGAAAUAGAUUGAACCGAUC	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s358_TRINITY_DN348_c0_g1_170_TPlot.pdf
TRINITY_DN348_c0_g1:171	si_s357	TRINITY_DN348_c0_g1	160	179	171	-28.70	-18.70	0.651567944250871	10	4-8,176-172;10-11,171-170;13-21,168-160	1-3,179-177[UP5];9-9,x-x[BULq];12-12,169-169[SIL]	(((((((((.((-(((((...&...))))).)).)))))))))	AUCGGUUCAUUC-GUUUCGUU&AAAGAAAUAGAUUGAACCGAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN348_c0_g1_171_TPlot.pdf
TRINITY_DN348_c0_g1:181	si_s840	TRINITY_DN348_c0_g1	170	190	181	-32.20	-22.70	0.704968944099379	4	1-17,190-174;19-21,172-170	18-18,173-173[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	UCGUUUCGUUUCUUUCGGAUU&AAUUUGAAAGAAGCGAGUCGA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s840_TRINITY_DN348_c0_g1_181_TPlot.pdf
TRINITY_DN348_c0_g1:186	si_s835	TRINITY_DN348_c0_g1	175	197	186	-27.70	-20.40	0.736462093862816	6.5	1-5,197-193;6-21,190-175	x-x,192-191[BULt]	((((((((((((((((..(((((&)))))--))))))))))))))))	UCGUUUCUUUCGGAUUUCGUUUU&AAAAC--AAUUUGAAAGAAGCGA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s835_TRINITY_DN348_c0_g1_186_TPlot.pdf
TRINITY_DN348_c0_g1:829	si_s71	TRINITY_DN348_c0_g1	818	838	829	-25.70	-18.78	0.730739299610895	8	1-5,838-834;9-20,830-819	6-8,833-831[SIL];21-21,818-818[UP3]	.((((((((((((...(((((&)))))...)))))))))))).	UGGAAAGAAAAAGUCAAGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999996115805695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN348_c0_g1_829_TPlot.pdf
TRINITY_DN348_c0_g1:830	si_s70	TRINITY_DN348_c0_g1	819	839	830	-25.80	-18.38	0.712403100775194	8	2-6,838-834;10-21,830-819	1-1,839-839[UP5];7-9,833-831[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	GGAAAGAAAAAGUCAAGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999451348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN348_c0_g1_830_TPlot.pdf
TRINITY_DN3490_c0_g1:1031	si_s809	TRINITY_DN3490_c0_g1	1019	1040	1031	-28.50	-19.50	0.684210526315789	7.5	1-8,1040-1033;10-12,1031-1029;13-19,1027-1021	9-9,1032-1032[SIL];x-x,1028-1028[BULt];20-21,1020-1019[UP3]	..(((((((.(((.((((((((&)))))))).)))-)))))))..	UAUAAGAAGCAGGAAGCGAAGA&UCUUCGUUACCU-UUUCUUAAU	4	0.999998511189932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3490_c0_g1_1031_TPlot.pdf
TRINITY_DN3490_c0_g1:1209	si_s898	TRINITY_DN3490_c0_g1	1198	1218	1209	-30.70	-21.40	0.697068403908795	9.5	1-5,1218-1214;8-18,1211-1201	6-7,1213-1212[SIL];19-21,1200-1198[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	GGCGGAAUUGGAGAACGAGCC&GGCUUUCUCUUCAAUUUCAAU	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN3490_c0_g1_1209_TPlot.pdf
TRINITY_DN3490_c0_g1:1210	si_s897	TRINITY_DN3490_c0_g1	1199	1219	1210	-31.30	-21.40	0.68370607028754	9.5	2-6,1218-1214;9-19,1211-1201	1-1,1219-1219[UP5];7-8,1213-1212[SIL];20-21,1200-1199[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	GCGGAAUUGGAGAACGAGCCG&AGGCUUUCUCUUCAAUUUCAA	2	0.994287804141701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN3490_c0_g1_1210_TPlot.pdf
TRINITY_DN3490_c0_g1:1211	si_s896	TRINITY_DN3490_c0_g1	1200	1220	1211	-31.60	-21.40	0.677215189873418	10	3-7,1218-1214;10-20,1211-1201	1-2,1220-1219[UP5];8-9,1213-1212[SIL];21-21,1200-1200[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	CGGAAUUGGAGAACGAGCCGA&UAGGCUUUCUCUUCAAUUUCA	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3490_c0_g1_1211_TPlot.pdf
TRINITY_DN3490_c0_g1:1212	si_s895	TRINITY_DN3490_c0_g1	1201	1221	1212	-31.10	-21.00	0.67524115755627	11	4-8,1218-1214;11-21,1211-1201	1-3,1221-1219[UP5];9-10,1213-1212[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GGAAUUGGAGAACGAGCCGAU&AUAGGCUUUCUCUUCAAUUUC	2	0.995319218271231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3490_c0_g1_1212_TPlot.pdf
TRINITY_DN3490_c0_g1:1647	si_s67	TRINITY_DN3490_c0_g1	1635	1656	1647	-25.60	-17.50	0.68359375	8.5	2-16,1655-1641;18-20,1638-1636	1-1,1656-1656[UP5];17-17,1640-1639[AILt];21-21,1635-1635[UP3]	.(((..(((((((((((((((.&.)))))))))))))))-.))).	CGGAUCAGGAAGUGGAGGUUGA&GCAACUUCUAUUUUUU-UUCUU	3	0.999999980910168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3490_c0_g1_1647_TPlot.pdf
TRINITY_DN3490_c0_g1:2933	si_s68	TRINITY_DN3490_c0_g1	2922	2942	2933	-23.10	-16.70	0.722943722943723	11	1-1,2942-2942;4-18,2939-2925	2-3,2941-2940[SIL];19-21,2924-2922[UP3]	...(((((((((((((((..(&)..)))))))))))))))...	AUUGGAAAGAGAUGGGAGGGG&CAACUUCUAUUUUUUUUCUUU	3	0.999999723739162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3490_c0_g1_2933_TPlot.pdf
TRINITY_DN3490_c0_g1:473	si_a321	TRINITY_DN3490_c0_g1	462	482	473	-26.70	-17.80	0.666666666666667	7.5	3-16,480-467;18-20,465-463	1-2,482-481[UP5];17-17,466-466[SIL];21-21,462-462[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	UGAAGGGGAAGAUCAUGGACC&UAUCCAUGAUUUUUUUAUUCC	4	0.999954185126487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3490_c0_g1_473_TPlot.pdf
TRINITY_DN3494_c0_g1:1177	si_a663	TRINITY_DN3494_c0_g1	1161	1186	1177	-31.40	-20.50	0.652866242038217	9	1-12,1186-1175;13-15,1173-1171;16-18,1166-1164	x-x,1174-1174[BULt];x-x,1170-1167[BULt];19-21,1163-1161[UP3]	...(((....(((.((((((((((((&))))))))))))-)))----)))...	AAUGGAGAAAAUCAAAUAGGCAUUUC&GAAAUGCCUAUU-GAU----UCCUUA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN3494_c0_g1_1177_TPlot.pdf
TRINITY_DN3494_c0_g1:1185	si_a8	TRINITY_DN3494_c0_g1	1173	1197	1185	-29.50	-19.90	0.674576271186441	9	1-7,1197-1191;8-12,1187-1183;13-20,1181-1174	x-x,1190-1188[BULt];x-x,1182-1182[BULt];21-21,1173-1173[UP3]	.((((((((.(((((...(((((((&)))))))---)))))-)))))))).	CAAAUAGGCAUUUCUAAACUUCAAU&AUUGAAG---AGAAA-GCCUAUUUA	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN3494_c0_g1_1185_TPlot.pdf
TRINITY_DN3494_c0_g1:2915	si_a738	TRINITY_DN3494_c0_g1	2904	2924	2915	-40.10	-28.00	0.698254364089775	11.5	6-19,2919-2906	1-5,2924-2920[UP5];20-21,2905-2904[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAUUAUGGCCAGGGGUCAUCC&UCUUUACCCCUGGCCAUGAAC	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a738_TRINITY_DN3494_c0_g1_2915_TPlot.pdf
TRINITY_DN3494_c0_g1:2917	si_a736	TRINITY_DN3494_c0_g1	2906	2926	2917	-40.20	-27.80	0.691542288557214	13.5	8-21,2919-2906	1-7,2926-2920[UP5]	((((((((((((((.......&.......))))))))))))))	UUAUGGCCAGGGGUCAUCCGU&CAUCUUUACCCCUGGCCAUGA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN3494_c0_g1_2917_TPlot.pdf
TRINITY_DN3494_c0_g1:3087	si_a478	TRINITY_DN3494_c0_g1	3076	3096	3087	-21.30	-15.50	0.727699530516432	8	1-11,3096-3086;14-21,3083-3076	12-13,3085-3084[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AUAUUCUAGUUGAUGAUGGUU&AAUUAUUGUUAUAUAGAAUAU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN3494_c0_g1_3087_TPlot.pdf
TRINITY_DN3494_c0_g1:3088	si_a477	TRINITY_DN3494_c0_g1	3077	3097	3088	-21.50	-14.30	0.665116279069767	8	2-12,3096-3086;15-21,3083-3077	1-1,3097-3097[UP5];13-14,3085-3084[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	UAUUCUAGUUGAUGAUGGUUC&UAAUUAUUGUUAUAUAGAAUA	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN3494_c0_g1_3088_TPlot.pdf
TRINITY_DN3494_c0_g1:600	si_a142	TRINITY_DN3494_c0_g1	589	609	600	-23.50	-16.30	0.693617021276596	10.5	4-14,606-596;16-19,594-591	1-3,609-607[UP5];15-15,595-595[SIL];20-21,590-589[UP3]	..((((.(((((((((((...&...))))))))))).))))..	UGGGAGGAACAGCGAUUAUAG&AAUUAAUCGUUGUUGUUUUAA	3	0.999999956221005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3494_c0_g1_600_TPlot.pdf
TRINITY_DN3495_c0_g1:1327	si_a868	TRINITY_DN3495_c0_g1	1316	1336	1327	-24.80	-19.10	0.770161290322581	5.5	3-21,1334-1316	1-2,1336-1335[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UGUAACUAAAUUUUUAAUGUU&AUUAUUAAAGAUUUAGUUGCA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN3495_c0_g1_1327_TPlot.pdf
TRINITY_DN3495_c0_g1:1418	si_s483	TRINITY_DN3495_c0_g1	1404	1427	1418	-21.40	-14.10	0.658878504672897	10.5	1-7,1427-1421;9-12,1419-1416;13-20,1412-1405	8-8,1420-1420[SIL];x-x,1415-1413[BULt];21-21,1404-1404[UP3]	.((((((((...((((.(((((((&))))))).))))---)))))))).	GAUAUUUGAUGAGUAAUUAUAGGA&UCCUAUAUUUAU---UUAAAUAUA	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN3495_c0_g1_1418_TPlot.pdf
TRINITY_DN3495_c0_g2:2000	si_s444	TRINITY_DN3495_c0_g2	1988	2009	2000	-22.80	-16.60	0.728070175438597	6	1-4,2009-2006;6-15,2004-1995;16-20,1993-1989	5-5,2005-2005[SIL];x-x,1994-1994[BULt];21-21,1988-1988[UP3]	.(((((.((((((((((.((((&)))).))))))))))-))))).	UUUGUUCGUUGUAUAUGUUAUG&CAUAUUAUAUAUAAC-AACAAU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN3495_c0_g2_2000_TPlot.pdf
TRINITY_DN3495_c0_g2:2001	si_s443	TRINITY_DN3495_c0_g2	1989	2010	2001	-23.50	-16.70	0.71063829787234	5.5	2-5,2009-2006;7-16,2004-1995;17-21,1993-1989	1-1,2010-2010[UP5];6-6,2005-2005[SIL];x-x,1994-1994[BULt]	(((((.((((((((((.((((.&.)))).))))))))))-)))))	UUGUUCGUUGUAUAUGUUAUGG&ACAUAUUAUAUAUAAC-AACAA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN3495_c0_g2_2001_TPlot.pdf
TRINITY_DN3495_c0_g3:204	si_s81	TRINITY_DN3495_c0_g3	193	213	204	-28.90	-19.40	0.671280276816609	7.5	1-8,213-206;11-21,203-193	9-10,205-204[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	AGAGGAAGAAAAUGAGGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3495_c0_g3_204_TPlot.pdf
TRINITY_DN3495_c0_g3:447	si_a407	TRINITY_DN3495_c0_g3	436	457	447	-19.80	-13.20	0.666666666666667	10	3-9,455-449;10-19,447-438	1-2,457-456[UP5];x-x,448-448[BULt];20-21,437-436[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	CAUUGAGUAUAAUGCAGAACCU&UUGUUUUGU-UUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3495_c0_g3_447_TPlot.pdf
TRINITY_DN3495_c0_g3:449	si_a406	TRINITY_DN3495_c0_g3	437	458	449	-19.80	-13.20	0.666666666666667	11	4-10,455-449;11-20,447-438	1-3,458-456[UP5];x-x,448-448[BULt];21-21,437-437[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	AUUGAGUAUAAUGCAGAACCUU&AUUGUUUUGU-UUAUAUUUAAA	2	0.999999999999875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3495_c0_g3_449_TPlot.pdf
TRINITY_DN3495_c0_g3:657	si_a352	TRINITY_DN3495_c0_g3	646	666	657	-22.50	-15.00	0.666666666666667	10.5	5-19,662-648	1-4,666-663[UP5];20-21,647-646[UP3]	..(((((((((((((((....&....)))))))))))))))..	GUUCGAGGUAGAAUUAAAACA&AAUAUUAAUUCUAUUUUGAUC	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN3495_c0_g3_657_TPlot.pdf
TRINITY_DN3495_c0_g3:659	si_a350	TRINITY_DN3495_c0_g3	648	668	659	-20.30	-14.90	0.733990147783251	12.5	7-21,662-648	1-6,668-663[UP5]	(((((((((((((((......&......)))))))))))))))	UCGAGGUAGAAUUAAAACAAA&AAAAUAUUAAUUCUAUUUUGA	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN3495_c0_g3_659_TPlot.pdf
TRINITY_DN3497_c0_g1:1050	si_s895	TRINITY_DN3497_c0_g1	1039	1059	1050	-31.10	-21.80	0.70096463022508	7.5	4-15,1056-1045;17-18,1043-1042;20-21,1040-1039	1-3,1059-1057[UP5];16-16,1044-1044[SIL];19-19,1041-1041[SIL]	((.((.((((((((((((...&...)))))))))))).)).))	GAUAUAGAGGAGAAAGCCAAA&AUAGGCUUUCUCUUCAAUUUC	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3497_c0_g1_1050_TPlot.pdf
TRINITY_DN3497_c0_g1:1052	si_s893	TRINITY_DN3497_c0_g1	1041	1061	1052	-29.10	-21.50	0.738831615120275	13.5	6-17,1056-1045	1-5,1061-1057[UP5];18-21,1044-1041[UP3]	....((((((((((((.....&.....))))))))))))....	UAUAGAGGAGAAAGCCAAAGG&AAAUAGGCUUUCUCUUCAAUU	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN3497_c0_g1_1052_TPlot.pdf
TRINITY_DN3497_c0_g1:1053	si_s892	TRINITY_DN3497_c0_g1	1042	1062	1053	-29.50	-21.50	0.728813559322034	14.5	7-18,1056-1045	1-6,1062-1057[UP5];19-21,1044-1042[UP3]	...((((((((((((......&......))))))))))))...	AUAGAGGAGAAAGCCAAAGGU&UAAAUAGGCUUUCUCUUCAAU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN3497_c0_g1_1053_TPlot.pdf
TRINITY_DN3497_c0_g1:1055	si_s890	TRINITY_DN3497_c0_g1	1044	1064	1055	-29.50	-21.50	0.728813559322034	16.5	9-20,1056-1045	1-8,1064-1057[UP5];21-21,1044-1044[UP3]	.((((((((((((........&........)))))))))))).	AGAGGAGAAAGCCAAAGGUAU&AAUAAAUAGGCUUUCUCUUCA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN3497_c0_g1_1055_TPlot.pdf
TRINITY_DN3497_c0_g1:1056	si_s889	TRINITY_DN3497_c0_g1	1045	1065	1056	-28.80	-21.00	0.729166666666667	17.5	10-21,1056-1045	1-9,1065-1057[UP5]	((((((((((((.........&.........))))))))))))	GAGGAGAAAGCCAAAGGUAUG&AAAUAAAUAGGCUUUCUCUUC	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3497_c0_g1_1056_TPlot.pdf
TRINITY_DN3497_c0_g1:2578	si_a398	TRINITY_DN3497_c0_g1	2567	2587	2578	-22.40	-15.50	0.691964285714286	10.5	5-20,2583-2568	1-4,2587-2584[UP5];21-21,2567-2567[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAUGGAGCAAUUCUACGGG&AAUAUAGAAUUGUUUUGUUUA	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3497_c0_g1_2578_TPlot.pdf
TRINITY_DN3497_c0_g1:3065	si_a549	TRINITY_DN3497_c0_g1	3054	3080	3065	-29.50	-19.40	0.657627118644068	18	2-9,3079-3072;10-13,3065-3062;15-21,3060-3054	1-1,3080-3080[UP5];x-x,3071-3066[BULt];14-14,3061-3061[SIL]	(((((((.((((......((((((((.&.))))))))------)))).)))))))	GGAGGUAUGGGACACCCUGUGGAUUGG&UCAAUCUAU------UUCUUUAUCUCC	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN3497_c0_g1_3065_TPlot.pdf
TRINITY_DN3497_c0_g1:591	si_s29	TRINITY_DN3497_c0_g1	570	600	591	-26.40	-17.20	0.651515151515151	24.5	1-12,600-589;13-18,578-573	x-x,588-579[BULt];19-21,572-570[UP3]	...((((((..........((((((((((((&))))))))))))----------))))))...	GACAGAGAUGGAAAUAAAAUUAGUUGCGAUC&GAUUGCAACUAA----------AUCUUUAAU	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN3497_c0_g1_591_TPlot.pdf
TRINITY_DN3497_c0_g1:595	si_s25	TRINITY_DN3497_c0_g1	584	604	595	-27.10	-18.60	0.686346863468635	9	3-16,602-589	1-2,604-603[UP5];17-21,588-584[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAAAAUUAGUUGCGAUCAAGC&UAUUGAUUGCAACUAAAUCUU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN3497_c0_g1_595_TPlot.pdf
TRINITY_DN3497_c0_g1:600	si_s20	TRINITY_DN3497_c0_g1	589	615	600	-27.80	-19.06	0.685611510791367	15.5	1-6,615-610;8-21,602-589	7-7,609-603[AILt]	((((((((((((((.......((((((&))))))------.))))))))))))))	UUAGUUGCGAUCAAGCCAUUGAUGGUA&UACUAU------AUUGAUUGCAACUAA	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN3497_c0_g1_600_TPlot.pdf
TRINITY_DN3497_c0_g1:946	si_s64	TRINITY_DN3497_c0_g1	934	955	946	-24.10	-16.60	0.688796680497925	11	4-11,952-945;13-21,942-934	1-3,955-953[UP5];12-12,944-943[AILt]	(((((((((..((((((((...&...))))))))-.)))))))))	AAGAAAAGUUUGAGGUUGCAGC&UUAGCAACUUC-UAUUUUUUUU	2	0.999871711273646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3497_c0_g1_946_TPlot.pdf
TRINITY_DN34987_c0_g1:285	si_a461	TRINITY_DN34987_c0_g1	274	296	285	-21.50	-14.10	0.655813953488372	10	2-7,295-290;9-20,286-275	1-1,296-296[UP5];8-8,289-287[AILt];21-21,274-274[UP3]	.((((((((((((...((((((.&.))))))--.)))))))))))).	UAUUGCAUGUUAUUGUUAUGACG&UGUUAUA--UAUAAUAUGUAAUU	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN34987_c0_g1_285_TPlot.pdf
TRINITY_DN34993_c0_g1:134	si_a665	TRINITY_DN34993_c0_g1	123	143	134	-29.60	-20.60	0.695945945945946	8	3-5,141-139;7-19,137-125	1-2,143-142[UP5];6-6,138-138[SIL];20-21,124-123[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	AUUAAGGAAUCAGUAUGCAAG&AAUGCCUAUUGAUUCCUUAUU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN34993_c0_g1_134_TPlot.pdf
TRINITY_DN349_c0_g1:1762	si_s808	TRINITY_DN349_c0_g1	1751	1772	1762	-28.60	-18.60	0.65034965034965	11	2-6,1771-1767;8-9,1765-1764;11-19,1761-1753	1-1,1772-1772[UP5];7-7,1766-1766[SIL];10-10,1763-1762[AILt];20-21,1752-1751[UP3]	..(((((((((..((.(((((.&.))))).))-.)))))))))..	UGAAGAGGAGGAGGAGGAAGAG&AUCUUCGUU-ACCUUUUCUUAA	4	0.999999999999949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN349_c0_g1_1762_TPlot.pdf
TRINITY_DN349_c0_g1:1767	si_s79	TRINITY_DN349_c0_g1	1755	1776	1767	-26.20	-22.00	0.83969465648855	8	1-11,1776-1766;12-21,1764-1755	x-x,1765-1765[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	GAGGAGGAGGAGGAAGAGGAGA&UUUUUUCUUUC-CUUUCUUCUU	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN349_c0_g1_1767_TPlot.pdf
TRINITY_DN349_c0_g1:2134	si_a122	TRINITY_DN349_c0_g1	2123	2145	2134	-29.00	-18.86	0.650344827586207	13.5	1-6,2145-2140;10-14,2134-2130;16-21,2128-2123	7-9,2139-2135[AILt];15-15,2129-2129[SIL]	((((((.(((((.....((((((&))))))--...))))).))))))	UGCUAUGGCUGUUAGGUACGAGC&GCUUGU--UUUAUAGCAAUAGUA	4	0.999907570240935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN349_c0_g1_2134_TPlot.pdf
TRINITY_DN349_c0_g1:908	si_a782	TRINITY_DN349_c0_g1	896	917	908	-26.40	-17.60	0.666666666666667	10.5	4-10,914-908;11-20,906-897	1-3,917-915[UP5];x-x,907-907[BULt];21-21,896-896[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	CAUGGAGGAGUCAGAAGAGAAA&CAACUCUUCU-AUUUUUCUAUU	3	0.999999982747854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN349_c0_g1_908_TPlot.pdf
TRINITY_DN349_c0_g1:917	si_s71	TRINITY_DN349_c0_g1	901	927	917	-25.70	-17.60	0.684824902723736	8.5	1-4,927-924;5-17,922-910;18-21,904-901	x-x,923-923[BULt];x-x,909-905[BULt]	((((.....(((((((((((((.((((&))))-)))))))))))))-----))))	AGGAGUCAGAAGAGAAAAAAUACGAGG&CUUC-UAUUUUUUUUCUU-----UCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN349_c0_g1_917_TPlot.pdf
TRINITY_DN349_c0_g1:920	si_s68	TRINITY_DN349_c0_g1	909	930	920	-23.10	-15.90	0.688311688311688	9	4-7,927-924;8-21,922-909	1-3,930-928[UP5];x-x,923-923[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GAAGAGAAAAAAUACGAGGAUA&CAACUUC-UAUUUUUUUUCUUU	3	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN349_c0_g1_920_TPlot.pdf
TRINITY_DN34_c0_g1:396	si_s555	TRINITY_DN34_c0_g1	385	405	396	-26.90	-18.10	0.672862453531599	7.5	3-12,403-394;14-20,392-386	1-2,405-404[UP5];13-13,393-393[SIL];21-21,385-385[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	ACCUGGAGUUAUUGAUUCUCC&AUAGAAUUAAUAUUUUCGGGA	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN34_c0_g1_396_TPlot.pdf
TRINITY_DN35001_c0_g2:1591	si_a866	TRINITY_DN35001_c0_g2	1577	1600	1591	-23.30	-15.54	0.666952789699571	9.5	1-12,1600-1589;14-21,1584-1577	13-13,1588-1585[AILt]	((((((((....((((((((((((&))))))))))))---.))))))))	CAACUAGACAUAUUUUGAUAAUUG&CAAUUAUUAAAG---AUUUAGUUG	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN35001_c0_g2_1591_TPlot.pdf
TRINITY_DN35001_c0_g2:734	si_a784	TRINITY_DN35001_c0_g2	723	743	734	-24.70	-17.50	0.708502024291498	9.5	3-5,741-739;7-21,737-723	1-2,743-742[UP5];6-6,738-738[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GAAAUGGAGAGGUAGUGGAUC&ACUCUUCUAUUUUUCUAUUUU	3	0.999999964960652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN35001_c0_g2_734_TPlot.pdf
TRINITY_DN35001_c0_g2:763	si_s61	TRINITY_DN35001_c0_g2	752	777	763	-26.50	-18.92	0.713962264150943	14	1-8,777-770;10-21,763-752	9-9,769-764[AILt]	((((((((((((......((((((((&))))))))-----.))))))))))))	AGAAAUGGAGGUAUCGAAGCUAACUU&AAGUUAGC-----AACUUCUAUUUUU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN35001_c0_g2_763_TPlot.pdf
TRINITY_DN35004_c0_g1:103	si_s208	TRINITY_DN35004_c0_g1	92	112	103	-34.50	-23.20	0.672463768115942	10	5-7,108-106;9-21,104-92	1-4,112-109[UP5];8-8,105-105[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GUUUUGGACACAAGUGGCAGU&UGUACCAGUUGUGUUCGAAAC	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN35004_c0_g1_103_TPlot.pdf
TRINITY_DN3500_c0_g1:1415	si_s476	TRINITY_DN3500_c0_g1	1404	1424	1415	-28.40	-19.70	0.693661971830986	12	1-11,1424-1414	12-21,1413-1404[UP3]	..........(((((((((((&)))))))))))..........	CACUCCAGGAGGGAUCCGUUG&CAACGGAUCCUAUAUUUAUUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN3500_c0_g1_1415_TPlot.pdf
TRINITY_DN3500_c0_g1:1416	si_s475	TRINITY_DN3500_c0_g1	1405	1425	1416	-30.80	-20.10	0.652597402597403	11	2-12,1424-1414	1-1,1425-1425[UP5];13-21,1413-1405[UP3]	.........(((((((((((.&.))))))))))).........	ACUCCAGGAGGGAUCCGUUGA&CCAACGGAUCCUAUAUUUAUU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s475_TRINITY_DN3500_c0_g1_1416_TPlot.pdf
TRINITY_DN3500_c0_g1:1418	si_s473	TRINITY_DN3500_c0_g1	1407	1428	1418	-31.80	-21.90	0.688679245283019	9.5	1-3,1428-1426;4-14,1424-1414	x-x,1425-1425[BULt];15-21,1413-1407[UP3]	.......(((((((((((.(((&)))-))))))))))).......	UCCAGGAGGGAUCCGUUGAGAU&AUC-CAACGGAUCCUAUAUUUA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN3500_c0_g1_1418_TPlot.pdf
TRINITY_DN3500_c0_g1:1420	si_s471	TRINITY_DN3500_c0_g1	1409	1430	1420	-32.00	-22.70	0.709375	9.5	2-5,1429-1426;6-16,1424-1414	1-1,1430-1430[UP5];x-x,1425-1425[BULt];17-21,1413-1409[UP3]	.....(((((((((((.((((.&.))))-))))))))))).....	CAGGAGGGAUCCGUUGAGAUGC&AUAUC-CAACGGAUCCUAUAUU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN3500_c0_g1_1420_TPlot.pdf
TRINITY_DN3500_c0_g1:1421	si_s470	TRINITY_DN3500_c0_g1	1410	1431	1421	-33.70	-22.70	0.673590504451039	10.5	3-6,1429-1426;7-17,1424-1414	1-2,1431-1430[UP5];x-x,1425-1425[BULt];18-21,1413-1410[UP3]	....(((((((((((.((((..&..))))-)))))))))))....	AGGAGGGAUCCGUUGAGAUGCU&CAUAUC-CAACGGAUCCUAUAU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s470_TRINITY_DN3500_c0_g1_1421_TPlot.pdf
TRINITY_DN3500_c0_g1:1872	si_s622	TRINITY_DN3500_c0_g1	1861	1881	1872	-34.20	-25.20	0.736842105263158	4.5	1-4,1881-1878;5-7,1876-1874;9-21,1873-1861	x-x,1877-1877[BULt];8-8,x-x[BULq]	(((((((((((((-(((.((((&))))-))).)))))))))))))	CUACGAAGAGAUC-CUUCGGAU&AUCC-AAGCGAUCUUUUCGUAG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN3500_c0_g1_1872_TPlot.pdf
TRINITY_DN3500_c0_g1:1873	si_s621	TRINITY_DN3500_c0_g1	1862	1882	1873	-32.50	-23.00	0.707692307692308	5.5	2-5,1881-1878;6-8,1876-1874;10-21,1873-1862	1-1,1882-1882[UP5];x-x,1877-1877[BULt];9-9,x-x[BULq]	((((((((((((-(((.((((.&.))))-))).))))))))))))	UACGAAGAGAUC-CUUCGGAUC&AAUCC-AAGCGAUCUUUUCGUA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN3500_c0_g1_1873_TPlot.pdf
TRINITY_DN3500_c0_g1:2012	si_s93	TRINITY_DN3500_c0_g1	1997	2021	2012	-34.80	-22.80	0.655172413793104	8.5	1-5,2021-2017;7-14,2015-2008;15-21,2003-1997	6-6,2016-2016[SIL];x-x,2007-2004[BULt]	(((((((....((((((((.(((((&))))).))))))))----)))))))	GAUCUGGAAUCAGCGAAGGCGAAGA&UCUUCUUCUUCGCU----UCGGAUU	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3500_c0_g1_2012_TPlot.pdf
TRINITY_DN3500_c0_g1:2059	si_s628	TRINITY_DN3500_c0_g1	2048	2067	2059	-35.40	-23.40	0.661016949152542	10	1-4,2067-2064;6-8,2063-2061;11-19,2058-2050	5-5,x-x[BULq];9-10,2060-2059[SIL];20-21,2049-2048[UP3]	..(((((((((..(((-((((&)))).)))..)))))))))..	GCGCGCCUGCGUCAAG-UUGC&GCGAUCUUUUCGUAGGCGUUU	3	0.999993631342644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN3500_c0_g1_2059_TPlot.pdf
TRINITY_DN3500_c0_g1:2060	si_s627	TRINITY_DN3500_c0_g1	2049	2068	2060	-36.10	-23.50	0.650969529085873	10	2-5,2067-2064;7-9,2063-2061;12-20,2058-2050	1-1,2068-2068[UP5];6-6,x-x[BULq];10-11,2060-2059[SIL];21-21,2049-2049[UP3]	.(((((((((..(((-((((.&.)))).)))..))))))))).	CGCGCCUGCGUCAAG-UUGCA&AGCGAUCUUUUCGUAGGCGUU	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN3500_c0_g1_2060_TPlot.pdf
TRINITY_DN3500_c0_g1:2061	si_s626	TRINITY_DN3500_c0_g1	2050	2069	2061	-36.10	-23.50	0.650969529085873	11	3-6,2067-2064;8-10,2063-2061;13-21,2058-2050	1-2,2069-2068[UP5];7-7,x-x[BULq];11-12,2060-2059[SIL]	(((((((((..(((-((((..&..)))).)))..)))))))))	GCGCCUGCGUCAAG-UUGCAU&AAGCGAUCUUUUCGUAGGCGU	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3500_c0_g1_2061_TPlot.pdf
TRINITY_DN3500_c0_g1:5931	si_s626	TRINITY_DN3500_c0_g1	5917	5940	5931	-36.10	-26.50	0.734072022160665	9	3-15,5938-5926;16-20,5922-5918	1-2,5940-5939[UP5];x-x,5925-5923[BULt];21-21,5917-5917[UP3]	.(((((...(((((((((((((..&..)))))))))))))---))))).	UCGCCUCGGACGAGAAGAUUGCGA&AAGCGAUCUUUUCGU---AGGCGU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3500_c0_g1_5931_TPlot.pdf
TRINITY_DN3501_c0_g1:152	si_s76	TRINITY_DN3501_c0_g1	141	161	152	-23.60	-17.10	0.724576271186441	4	2-13,160-149;15-21,147-141	1-1,161-161[UP5];14-14,148-148[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGAAAGCAAAGAAGAAAGAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3501_c0_g1_152_TPlot.pdf
TRINITY_DN3501_c0_g1:153	si_s75	TRINITY_DN3501_c0_g1	142	162	153	-24.00	-16.40	0.683333333333333	6	3-14,160-149;16-21,147-142	1-2,162-161[UP5];15-15,148-148[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAAGCAAAGAAGAAAGAAG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3501_c0_g1_153_TPlot.pdf
TRINITY_DN3502_c0_g1:935	si_a791	TRINITY_DN3502_c0_g1	923	944	935	-26.50	-17.60	0.664150943396226	7.5	2-15,943-930;18-21,926-923	1-1,944-944[UP5];16-17,929-927[AILt]	((((...((((((((((((((.&.))))))))))))))-..))))	GGAUGUUGGAGAUGGAAGAAUU&UAUUUUUCUAUUUUC-CAAUCC	2	0.999890876151333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN3502_c0_g1_935_TPlot.pdf
TRINITY_DN3504_c0_g1:1448	si_a321	TRINITY_DN3504_c0_g1	1437	1457	1448	-26.70	-18.30	0.685393258426966	7.5	3-7,1455-1451;9-13,1449-1445;16-21,1442-1437	1-2,1457-1456[UP5];8-8,1450-1450[SIL];14-15,1444-1443[SIL]	((((((..(((((.(((((..&..))))).)))))..))))))	GGAAUAUCGAAAUGAUGGAGG&UAUCCAUGAUUUUUUUAUUCC	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3504_c0_g1_1448_TPlot.pdf
TRINITY_DN3504_c0_g1:2074	si_s525	TRINITY_DN3504_c0_g1	2063	2083	2074	-24.00	-15.60	0.65	12.5	6-6,2078-2078;8-21,2076-2063	1-5,2083-2079[UP5];7-7,2077-2077[SIL]	((((((((((((((.(.....&.....).))))))))))))))	AUCGAGAGUGAUUUGGUUAGG&UAAUUCGAAAUCAUUUUUGAU	4	0.999991030208567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN3504_c0_g1_2074_TPlot.pdf
TRINITY_DN3504_c0_g1:2361	si_a758	TRINITY_DN3504_c0_g1	2350	2370	2361	-34.00	-23.10	0.679411764705882	7.5	1-2,2370-2369;3-5,2367-2365;8-21,2363-2350	x-x,2368-2368[BULt];6-7,2364-2364[AILq]	((((((((((((((.-(((.((&))-)))..))))))))))))))	CAAUCAGAAACCUAU-GGACGG&CC-UCCUUUGGGUUUUUGAUUG	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN3504_c0_g1_2361_TPlot.pdf
TRINITY_DN3504_c0_g1:2551	si_a301	TRINITY_DN3504_c0_g1	2540	2560	2551	-27.80	-18.60	0.669064748201439	15	7-15,2554-2546;17-19,2544-2542	1-6,2560-2555[UP5];16-16,2545-2545[SIL];20-21,2541-2540[UP3]	..(((.(((((((((......&......))))))))).)))..	AUGUCGGAGCGAAUCAAAUCC&AAAAAAGAUUCGCUUGGAUUU	2	0.997456340380309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN3504_c0_g1_2551_TPlot.pdf
TRINITY_DN3504_c0_g1:2552	si_a300	TRINITY_DN3504_c0_g1	2541	2561	2552	-28.20	-18.60	0.659574468085106	16	8-16,2554-2546;18-20,2544-2542	1-7,2561-2555[UP5];17-17,2545-2545[SIL];21-21,2541-2541[UP3]	.(((.(((((((((.......&.......))))))))).))).	UGUCGGAGCGAAUCAAAUCCA&UAAAAAAGAUUCGCUUGGAUU	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN3504_c0_g1_2552_TPlot.pdf
TRINITY_DN3504_c0_g1:2553	si_a299	TRINITY_DN3504_c0_g1	2542	2562	2553	-28.30	-18.60	0.657243816254417	17	9-17,2554-2546;19-21,2544-2542	1-8,2562-2555[UP5];18-18,2545-2545[SIL]	(((.(((((((((........&........))))))))).)))	GUCGGAGCGAAUCAAAUCCAA&UUAAAAAAGAUUCGCUUGGAU	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN3504_c0_g1_2553_TPlot.pdf
TRINITY_DN3504_c0_g1:2670	si_a785	TRINITY_DN3504_c0_g1	2658	2679	2670	-25.90	-19.20	0.741312741312741	6	1-7,2679-2673;9-16,2671-2664;17-21,2662-2658	8-8,2672-2672[SIL];x-x,2663-2663[BULt]	(((((.((((((((.(((((((&))))))).))))))))-)))))	GAAAGUUGGAAGAAAAGGAGAG&CUCUUCUAUUUUUCUA-UUUUC	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN3504_c0_g1_2670_TPlot.pdf
TRINITY_DN3504_c0_g1:2671	si_a784	TRINITY_DN3504_c0_g1	2660	2680	2671	-24.70	-16.30	0.659919028340081	7	2-8,2679-2673;10-17,2671-2664;19-21,2662-2660	1-1,2680-2680[UP5];9-9,2672-2672[SIL];18-18,2663-2663[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	AAGUUGGAAGAAAAGGAGAGA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999999825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3504_c0_g1_2671_TPlot.pdf
TRINITY_DN3504_c0_g1:2672	si_a783	TRINITY_DN3504_c0_g1	2661	2681	2672	-24.70	-16.10	0.651821862348178	10	3-9,2679-2673;11-18,2671-2664	1-2,2681-2680[UP5];10-10,2672-2672[SIL];19-21,2663-2661[UP3]	...((((((((.(((((((..&..))))))).))))))))...	AGUUGGAAGAAAAGGAGAGAA&AACUCUUCUAUUUUUCUAUUU	2	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3504_c0_g1_2672_TPlot.pdf
TRINITY_DN3504_c0_g1:2673	si_s82	TRINITY_DN3504_c0_g1	2660	2682	2673	-28.90	-20.20	0.698961937716263	6.5	2-12,2681-2671;13-17,2669-2665;19-21,2662-2660	1-1,2682-2682[UP5];x-x,2670-2670[BULt];18-18,2664-2663[AILt]	(((..(((((.(((((((((((.&.)))))))))))-)))))-.)))	AAGUUGGAAGAAAAGGAGAGAAU&UUUCUUUCCUUU-CUUCU-UCUU	2	0.999999999999336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3504_c0_g1_2673_TPlot.pdf
TRINITY_DN3504_c0_g1:2675	si_s80	TRINITY_DN3504_c0_g1	2663	2684	2675	-28.20	-19.20	0.680851063829787	9.5	4-14,2681-2671;15-19,2669-2665	1-3,2684-2682[UP5];x-x,2670-2670[BULt];20-21,2664-2663[UP3]	..(((((.(((((((((((...&...)))))))))))-)))))..	UUGGAAGAAAAGGAGAGAAUCU&UUUUUCUUUCCUUU-CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3504_c0_g1_2675_TPlot.pdf
TRINITY_DN3504_c0_g1:2676	si_s79	TRINITY_DN3504_c0_g1	2664	2685	2676	-26.20	-19.20	0.732824427480916	10.5	5-15,2681-2671;16-20,2669-2665	1-4,2685-2682[UP5];x-x,2670-2670[BULt];21-21,2664-2664[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	UGGAAGAAAAGGAGAGAAUCUU&UUUUUUCUUUCCUUU-CUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3504_c0_g1_2676_TPlot.pdf
TRINITY_DN3504_c0_g1:2677	si_s78	TRINITY_DN3504_c0_g1	2665	2686	2677	-26.20	-19.20	0.732824427480916	11.5	6-16,2681-2671;17-21,2669-2665	1-5,2686-2682[UP5];x-x,2670-2670[BULt]	(((((.(((((((((((.....&.....)))))))))))-)))))	GGAAGAAAAGGAGAGAAUCUUG&UUUUUUUCUUUCCUUU-CUUCU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3504_c0_g1_2677_TPlot.pdf
TRINITY_DN3504_c0_g1:2678	si_s77	TRINITY_DN3504_c0_g1	2666	2687	2678	-25.50	-18.10	0.709803921568627	13	7-17,2681-2671;18-21,2669-2666	1-6,2687-2682[UP5];x-x,2670-2670[BULt]	((((.(((((((((((......&......)))))))))))-))))	GAAGAAAAGGAGAGAAUCUUGC&UUUUUUUUCUUUCCUUU-CUUC	2	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3504_c0_g1_2678_TPlot.pdf
TRINITY_DN3504_c0_g1:372	si_a632	TRINITY_DN3504_c0_g1	361	381	372	-26.10	-18.40	0.704980842911877	6	2-8,380-374;10-21,372-361	1-1,381-381[UP5];9-9,373-373[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	GCUUGAAGAAAUGGAUAUAAA&AUUAUGUCGAUUUUUUUGAGU	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN3504_c0_g1_372_TPlot.pdf
TRINITY_DN3505_c0_g1:1146	si_a481	TRINITY_DN3505_c0_g1	1132	1155	1146	-25.60	-16.70	0.65234375	5.5	1-14,1155-1142;15-19,1139-1135;20-21,1133-1132	x-x,1141-1140[BULt];x-x,1134-1134[BULt]	((.(((((..((((((((((((((&))))))))))))))--)))))-))	GAUUAUGUCGUCUAUAUGACAAUG&UAUUGUUAUAUAGA--AUAUG-UC	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN3505_c0_g1_1146_TPlot.pdf
TRINITY_DN3505_c0_g1:1147	si_a480	TRINITY_DN3505_c0_g1	1134	1156	1147	-23.70	-15.70	0.662447257383966	7	2-15,1155-1142;16-20,1139-1135	1-1,1156-1156[UP5];x-x,1141-1140[BULt];21-21,1134-1134[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	UUAUGUCGUCUAUAUGACAAUGU&UUAUUGUUAUAUAGA--AUAUGU	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN3505_c0_g1_1147_TPlot.pdf
TRINITY_DN3505_c0_g1:1148	si_a479	TRINITY_DN3505_c0_g1	1135	1157	1148	-23.00	-15.70	0.682608695652174	8	3-16,1155-1142;17-21,1139-1135	1-2,1157-1156[UP5];x-x,1141-1140[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	UAUGUCGUCUAUAUGACAAUGUU&AUUAUUGUUAUAUAGA--AUAUG	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN3505_c0_g1_1148_TPlot.pdf
TRINITY_DN3505_c0_g1:1151	si_a476	TRINITY_DN3505_c0_g1	1140	1159	1151	-22.90	-18.50	0.807860262008734	6	1-5,1159-1155;7-19,1154-1142	6-6,x-x[BULq];20-21,1141-1140[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	CGUCUAUAUGACAAU-GUUAC&GUAAUUAUUGUUAUAUAGAAU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN3505_c0_g1_1151_TPlot.pdf
TRINITY_DN3505_c0_g1:1152	si_a475	TRINITY_DN3505_c0_g1	1141	1160	1152	-23.50	-19.30	0.821276595744681	4.5	1-6,1160-1155;8-20,1154-1142	7-7,x-x[BULq];21-21,1141-1141[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	GUCUAUAUGACAAU-GUUACA&UGUAAUUAUUGUUAUAUAGAA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN3505_c0_g1_1152_TPlot.pdf
TRINITY_DN3505_c0_g1:1156	si_a470	TRINITY_DN3505_c0_g1	1146	1165	1156	-21.30	-14.80	0.694835680751174	8.5	4-11,1162-1155;13-21,1154-1146	1-3,1165-1163[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	UAUGACAAU-GUUACAUAAAU&UAAUAUGUAAUUAUUGUUAUA	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN3505_c0_g1_1156_TPlot.pdf
TRINITY_DN3505_c0_g1:1546	si_a17	TRINITY_DN3505_c0_g1	1535	1555	1546	-24.30	-17.00	0.699588477366255	9	3-7,1553-1549;9-19,1547-1537	1-2,1555-1554[UP5];8-8,1548-1548[SIL];20-21,1536-1535[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	UUCUGGAAAUAAAAGGGCUAA&AAAGCCUAUUUAUUUUUAGUU	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN3505_c0_g1_1546_TPlot.pdf
TRINITY_DN35062_c0_g1:266	si_a25	TRINITY_DN35062_c0_g1	255	275	266	-26.50	-19.50	0.735849056603774	12	6-20,270-256	1-5,275-271[UP5];21-21,255-255[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGUCUUAGAACUGAAGCGACA&UUUAUUUUUAGUUCUAAGACC	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN35062_c0_g1_266_TPlot.pdf
TRINITY_DN35066_c1_g1:1150	si_s88	TRINITY_DN35066_c1_g1	1139	1160	1150	-34.80	-23.60	0.67816091954023	7	1-5,1160-1156;6-17,1154-1143	x-x,1155-1155[BULt];18-21,1142-1139[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	ACAUCGAAGAAGAAGAGGAGGA&UCCUU-UCUUCUUCUUCGCUUC	2	0.999999933660852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN35066_c1_g1_1150_TPlot.pdf
TRINITY_DN35066_c1_g1:1151	si_s87	TRINITY_DN35066_c1_g1	1140	1161	1151	-32.90	-24.50	0.74468085106383	6	1-6,1161-1156;7-18,1154-1143	x-x,1155-1155[BULt];19-21,1142-1140[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CAUCGAAGAAGAAGAGGAGGAA&UUCCUU-UCUUCUUCUUCGCUU	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN35066_c1_g1_1151_TPlot.pdf
TRINITY_DN35066_c1_g1:1152	si_s86	TRINITY_DN35066_c1_g1	1141	1162	1152	-32.90	-24.90	0.756838905775076	5.5	1-7,1162-1156;8-19,1154-1143	x-x,1155-1155[BULt];20-21,1142-1141[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AUCGAAGAAGAAGAGGAGGAAG&UUUCCUU-UCUUCUUCUUCGCU	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN35066_c1_g1_1152_TPlot.pdf
TRINITY_DN35066_c1_g1:1153	si_s85	TRINITY_DN35066_c1_g1	1142	1163	1153	-33.80	-25.10	0.742603550295858	6	2-8,1162-1156;9-20,1154-1143	1-1,1163-1163[UP5];x-x,1155-1155[BULt];21-21,1142-1142[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	UCGAAGAAGAAGAGGAGGAAGU&CUUUCCUU-UCUUCUUCUUCGC	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN35066_c1_g1_1153_TPlot.pdf
TRINITY_DN35066_c1_g1:1154	si_s84	TRINITY_DN35066_c1_g1	1143	1164	1154	-32.30	-25.10	0.777089783281734	7	3-9,1162-1156;10-21,1154-1143	1-2,1164-1163[UP5];x-x,1155-1155[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	CGAAGAAGAAGAGGAGGAAGUU&UCUUUCCUU-UCUUCUUCUUCG	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN35066_c1_g1_1154_TPlot.pdf
TRINITY_DN35066_c1_g1:1155	si_s68	TRINITY_DN35066_c1_g1	1144	1165	1155	-23.10	-17.20	0.744588744588744	9	2-8,1164-1158;10-21,1155-1144	1-1,1165-1165[UP5];9-9,1157-1156[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	GAAGAAGAAGAGGAGGAAGUUA&CAACUUCU-AUUUUUUUUCUUU	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN35066_c1_g1_1155_TPlot.pdf
TRINITY_DN35066_c1_g1:1159	si_s80	TRINITY_DN35066_c1_g1	1147	1171	1159	-28.20	-21.20	0.75177304964539	8.5	1-7,1171-1165;8-13,1161-1156;14-21,1154-1147	x-x,1164-1162[BULt];x-x,1155-1155[BULt]	((((((((.((((((...(((((((&)))))))---))))))-))))))))	GAAGAAGAGGAGGAAGUUAGAAGAA&UUUUUCU---UUCCUU-UCUUCUUC	2	0.999994698078526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN35066_c1_g1_1159_TPlot.pdf
TRINITY_DN35066_c1_g1:1161	si_s78	TRINITY_DN35066_c1_g1	1149	1173	1161	-26.20	-18.40	0.702290076335878	9	1-9,1173-1165;10-15,1161-1156;16-21,1154-1149	x-x,1164-1162[BULt];x-x,1155-1155[BULt]	((((((.((((((...(((((((((&)))))))))---))))))-))))))	AGAAGAGGAGGAAGUUAGAAGAAAG&UUUUUUUCU---UUCCUU-UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN35066_c1_g1_1161_TPlot.pdf
TRINITY_DN35066_c1_g1:1165	si_s77	TRINITY_DN35066_c1_g1	1150	1174	1165	-25.50	-17.10	0.670588235294118	10.5	2-10,1173-1165;11-16,1161-1156;17-21,1154-1150	1-1,1174-1174[UP5];x-x,1164-1162[BULt];x-x,1155-1155[BULt]	(((((.((((((...(((((((((.&.)))))))))---))))))-)))))	GAAGAGGAGGAAGUUAGAAGAAAGU&UUUUUUUUCU---UUCCUU-UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN35066_c1_g1_1165_TPlot.pdf
TRINITY_DN35066_c1_g1:1225	si_s42	TRINITY_DN35066_c1_g1	1214	1236	1225	-24.90	-17.60	0.706827309236948	7.5	1-4,1236-1233;5-20,1230-1215	x-x,1232-1231[BULt];21-21,1214-1214[UP3]	.((((((((((((((((..((((&))))--)))))))))))))))).	AUGAAAUUCAAUUGUUGCAAAGA&UCUU--UAAUAAUUGGAUUUCAA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN35066_c1_g1_1225_TPlot.pdf
TRINITY_DN35066_c1_g1:1226	si_s41	TRINITY_DN35066_c1_g1	1215	1237	1226	-25.00	-17.40	0.696	7.5	2-5,1236-1233;6-21,1230-1215	1-1,1237-1237[UP5];x-x,1232-1231[BULt]	((((((((((((((((..((((.&.))))--))))))))))))))))	UGAAAUUCAAUUGUUGCAAAGAG&AUCUU--UAAUAAUUGGAUUUCA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN35066_c1_g1_1226_TPlot.pdf
TRINITY_DN3506_c0_g1:731	si_s69	TRINITY_DN3506_c0_g1	720	739	731	-23.40	-16.40	0.700854700854701	5.5	2-7,738-733;9-20,732-721	1-1,739-739[UP5];8-8,x-x[BULq];21-21,720-720[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	CGAAGAAAAAAAG-AGAAGUA&AACUUCUAUUUUUUUUCUUUC	2	0.999999999934472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3506_c0_g1_731_TPlot.pdf
TRINITY_DN3506_c0_g1:732	si_s68	TRINITY_DN3506_c0_g1	721	741	732	-23.10	-16.50	0.714285714285714	5.5	1-2,741-740;3-8,738-733;10-21,732-721	x-x,739-739[BULt];9-9,x-x[BULq]	((((((((((((-((((((.((&))-)))))).))))))))))))	GAAGAAAAAAAG-AGAAGUAUG&CA-ACUUCUAUUUUUUUUCUUU	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3506_c0_g1_732_TPlot.pdf
TRINITY_DN3506_c0_g1:824	si_a489	TRINITY_DN3506_c0_g1	812	833	824	-27.70	-18.20	0.657039711191336	7.5	3-10,831-824;11-13,822-820;15-20,818-813	1-2,833-832[UP5];x-x,823-823[BULt];14-14,819-819[SIL];21-21,812-812[UP3]	.((((((.(((.((((((((..&..))))))))-))).)))))).	AGAAGAAGGACAAUAUUCUAGA&UAUAGAAUAU-GUCGUUUUUCG	2	0.979157316154238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN3506_c0_g1_824_TPlot.pdf
TRINITY_DN3506_c0_g1:825	si_a488	TRINITY_DN3506_c0_g1	813	834	825	-26.40	-17.80	0.674242424242424	8.5	4-11,831-824;12-14,822-820;16-21,818-813	1-3,834-832[UP5];x-x,823-823[BULt];15-15,819-819[SIL]	((((((.(((.((((((((...&...))))))))-))).))))))	GAAGAAGGACAAUAUUCUAGAA&AUAUAGAAUAU-GUCGUUUUUC	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN3506_c0_g1_825_TPlot.pdf
TRINITY_DN35074_c0_g2:1465	si_a150	TRINITY_DN35074_c0_g2	1454	1476	1465	-29.90	-20.20	0.675585284280936	13.5	1-6,1476-1471;7-17,1468-1458	x-x,1470-1469[BULt];18-21,1457-1454[UP3]	....(((((((((((..((((((&))))))--)))))))))))....	CAAGGGCCUUGAAGCCUGGCAGC&GUUGUU--GUUUUAAGGUCAAUC	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN35074_c0_g2_1465_TPlot.pdf
TRINITY_DN35074_c0_g2:1466	si_a149	TRINITY_DN35074_c0_g2	1455	1477	1466	-29.40	-22.30	0.758503401360544	12.5	1-7,1477-1471;8-18,1468-1458	x-x,1470-1469[BULt];19-21,1457-1455[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	AAGGGCCUUGAAGCCUGGCAGCG&CGUUGUU--GUUUUAAGGUCAAU	0	0.0207932514287128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN35074_c0_g2_1466_TPlot.pdf
TRINITY_DN35074_c0_g2:1467	si_a148	TRINITY_DN35074_c0_g2	1456	1478	1467	-30.30	-23.90	0.788778877887789	11	1-8,1478-1471;9-19,1468-1458	x-x,1470-1469[BULt];20-21,1457-1456[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	AGGGCCUUGAAGCCUGGCAGCGA&UCGUUGUU--GUUUUAAGGUCAA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN35074_c0_g2_1467_TPlot.pdf
TRINITY_DN35074_c0_g2:1468	si_a147	TRINITY_DN35074_c0_g2	1457	1479	1468	-30.40	-23.90	0.786184210526316	11	2-9,1478-1471;10-20,1468-1458	1-1,1479-1479[UP5];x-x,1470-1469[BULt];21-21,1457-1457[UP3]	.(((((((((((..((((((((.&.))))))))--))))))))))).	GGGCCUUGAAGCCUGGCAGCGAA&AUCGUUGUU--GUUUUAAGGUCA	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN35074_c0_g2_1468_TPlot.pdf
TRINITY_DN35074_c0_g2:1471	si_a146	TRINITY_DN35074_c0_g2	1458	1480	1471	-29.70	-23.50	0.791245791245791	12	3-10,1478-1471;11-21,1468-1458	1-2,1480-1479[UP5];x-x,1470-1469[BULt]	(((((((((((..((((((((..&..))))))))--)))))))))))	GGCCUUGAAGCCUGGCAGCGAAU&AAUCGUUGUU--GUUUUAAGGUC	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN35074_c0_g2_1471_TPlot.pdf
TRINITY_DN35074_c0_g2:1472	si_a145	TRINITY_DN35074_c0_g2	1459	1481	1472	-28.10	-21.20	0.754448398576512	13.5	4-11,1478-1471;12-21,1468-1459	1-3,1481-1479[UP5];x-x,1470-1469[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	GCCUUGAAGCCUGGCAGCGAAUU&UAAUCGUUGUU--GUUUUAAGGU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN35074_c0_g2_1472_TPlot.pdf
TRINITY_DN3507_c0_g2:1090	si_a71	TRINITY_DN3507_c0_g2	1079	1099	1090	-23.30	-16.90	0.725321888412017	7.5	1-10,1099-1090;12-17,1088-1083	11-11,1089-1089[SIL];18-21,1082-1079[UP3]	....((((((.((((((((((&)))))))))).))))))....	UCGAGGAAAAGGAUUUGAAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3507_c0_g2_1090_TPlot.pdf
TRINITY_DN3507_c0_g2:1092	si_a69	TRINITY_DN3507_c0_g2	1081	1101	1092	-24.00	-16.90	0.704166666666667	7.5	3-12,1099-1090;14-19,1088-1083	1-2,1101-1100[UP5];13-13,1089-1089[SIL];20-21,1082-1081[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	GAGGAAAAGGAUUUGAAAGUA&UUCUUUCAAAUUGUUUUUCAU	3	0.999993631342644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3507_c0_g2_1092_TPlot.pdf
TRINITY_DN3507_c0_g2:737	si_s520	TRINITY_DN3507_c0_g2	726	745	737	-24.00	-16.90	0.704166666666667	7.5	2-6,744-740;10-21,737-726	1-1,745-745[UP5];7-9,739-738[AILq]	((((((((((((..-(((((.&.)))))...))))))))))))	AGAUGAUUUCGAUG-AAGAAC&AUUCUUAAUUCGAAAUCAUUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN3507_c0_g2_737_TPlot.pdf
TRINITY_DN3510_c0_g1:1805	si_a488	TRINITY_DN3510_c0_g1	1793	1814	1805	-26.40	-17.30	0.65530303030303	13	6-11,1809-1804;12-21,1802-1793	1-5,1814-1810[UP5];x-x,1803-1803[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GGGAGACGGCGAUAUUCAACGU&AUAUAGAAUAU-GUCGUUUUUC	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN3510_c0_g1_1805_TPlot.pdf
TRINITY_DN35114_c0_g1:162	si_s31	TRINITY_DN35114_c0_g1	151	171	162	-24.80	-18.30	0.737903225806452	8.5	2-8,170-164;11-19,161-153	1-1,171-171[UP5];9-10,163-162[SIL];20-21,152-151[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	CAGUUAAAGAUAAGGUUGCAG&UUGCAACUAAAUCUUUAAUAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN35114_c0_g1_162_TPlot.pdf
TRINITY_DN35115_c0_g1:117	si_s234	TRINITY_DN35115_c0_g1	105	126	117	-31.60	-22.60	0.715189873417722	9.5	5-11,122-116;12-21,114-105	1-4,126-123[UP5];x-x,115-115[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	AUGCCUGUUGCAUUCCUUUACA&GAAUAAGGAAU-CAAUAGGCAU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s234_TRINITY_DN35115_c0_g1_117_TPlot.pdf
TRINITY_DN35129_c0_g1:153	si_s78	TRINITY_DN35129_c0_g1	142	162	153	-26.20	-18.00	0.687022900763359	9.5	3-10,160-153;13-21,150-142	1-2,162-161[UP5];11-12,152-151[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	AGAAGAGAGUUAAGAGAAGCC&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN35129_c0_g1_153_TPlot.pdf
TRINITY_DN35129_c0_g1:290	si_s39	TRINITY_DN35129_c0_g1	279	299	290	-22.30	-15.50	0.695067264573991	5.5	3-16,297-284;19-21,281-279	1-2,299-298[UP5];17-18,283-282[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	AGACACAAUUAUUAAAGAUGC&AAAUCUUUAAUAAUUGGAUUU	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN35129_c0_g1_290_TPlot.pdf
TRINITY_DN3512_c0_g1:1702	si_a336	TRINITY_DN3512_c0_g1	1691	1711	1702	-31.20	-23.10	0.740384615384615	9	1-13,1711-1699	14-21,1698-1691[UP3]	........(((((((((((((&)))))))))))))........	GCUGCAGGGGGACAAGGAGUA&UAUUCCUUGUCCCGAAAAUAU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN3512_c0_g1_1702_TPlot.pdf
TRINITY_DN3512_c0_g1:1703	si_a335	TRINITY_DN3512_c0_g1	1692	1712	1703	-31.10	-23.50	0.755627009646302	8.5	1-14,1712-1699	15-21,1698-1692[UP3]	.......((((((((((((((&)))))))))))))).......	CUGCAGGGGGACAAGGAGUAG&UUAUUCCUUGUCCCGAAAAUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN3512_c0_g1_1703_TPlot.pdf
TRINITY_DN3512_c0_g1:1704	si_a334	TRINITY_DN3512_c0_g1	1693	1713	1704	-30.70	-23.60	0.768729641693811	9	2-15,1712-1699	1-1,1713-1713[UP5];16-21,1698-1693[UP3]	......((((((((((((((.&.))))))))))))))......	UGCAGGGGGACAAGGAGUAGC&UUUAUUCCUUGUCCCGAAAAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN3512_c0_g1_1704_TPlot.pdf
TRINITY_DN3512_c0_g1:1708	si_a330	TRINITY_DN3512_c0_g1	1697	1717	1708	-30.50	-23.60	0.773770491803279	13	6-19,1712-1699	1-5,1717-1713[UP5];20-21,1698-1697[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGGGGACAAGGAGUAGCAAUG&UUUUUUUAUUCCUUGUCCCGA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN3512_c0_g1_1708_TPlot.pdf
TRINITY_DN3512_c0_g1:1709	si_a329	TRINITY_DN3512_c0_g1	1698	1718	1709	-29.60	-23.60	0.797297297297297	14	7-20,1712-1699	1-6,1718-1713[UP5];21-21,1698-1698[UP3]	.((((((((((((((......&......)))))))))))))).	GGGGACAAGGAGUAGCAAUGA&AUUUUUUUAUUCCUUGUCCCG	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3512_c0_g1_1709_TPlot.pdf
TRINITY_DN3513_c0_g1:1055	si_a67	TRINITY_DN3513_c0_g1	1044	1063	1055	-27.20	-19.00	0.698529411764706	8	1-7,1063-1057;9-10,1056-1055;13-21,1052-1044	8-8,x-x[BULq];11-12,1054-1053[SIL]	(((((((((..((-(((((((&))))))).))..)))))))))	GAAGAGCAAAAUG-AGGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3513_c0_g1_1055_TPlot.pdf
TRINITY_DN3515_c0_g1:2527	si_s70	TRINITY_DN3515_c0_g1	2516	2538	2527	-25.80	-17.76	0.688372093023256	13	2-6,2537-2533;10-21,2527-2516	1-1,2538-2538[UP5];7-9,2532-2528[AILt]	((((((((((((.....(((((.&.)))))--...))))))))))))	GGAAGGAGAAAACUUCGAGGAGG&ACUUCU--AUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3515_c0_g1_2527_TPlot.pdf
TRINITY_DN3515_c0_g1:2539	si_s808	TRINITY_DN3515_c0_g1	2528	2551	2539	-28.60	-19.00	0.664335664335664	13	1-6,2551-2546;7-17,2542-2532	x-x,2545-2543[BULt];18-21,2531-2528[UP3]	....(((((((((((...((((((&))))))---)))))))))))....	CUUCGAGGAGGUAACUCCGGAGGU&AUCUUC---GUUACCUUUUCUUAA	4	0.999999999859519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3515_c0_g1_2539_TPlot.pdf
TRINITY_DN3515_c0_g1:2540	si_s807	TRINITY_DN3515_c0_g1	2529	2552	2540	-28.90	-19.50	0.674740484429066	12.5	1-7,2552-2546;8-18,2542-2532	x-x,2545-2543[BULt];19-21,2531-2529[UP3]	...(((((((((((...(((((((&)))))))---)))))))))))...	UUCGAGGAGGUAACUCCGGAGGUG&UAUCUUC---GUUACCUUUUCUUA	3	0.999999989808071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3515_c0_g1_2540_TPlot.pdf
TRINITY_DN3515_c0_g1:2546	si_s804	TRINITY_DN3515_c0_g1	2532	2555	2546	-27.90	-22.90	0.82078853046595	11	1-10,2555-2546;11-21,2542-2532	x-x,2545-2543[BULt]	(((((((((((...((((((((((&))))))))))---)))))))))))	GAGGAGGUAACUCCGGAGGUGAGA&UUUUAUCUUC---GUUACCUUUUC	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3515_c0_g1_2546_TPlot.pdf
TRINITY_DN3516_c0_g1:4149	si_a604	TRINITY_DN3516_c0_g1	4137	4158	4149	-31.60	-21.50	0.680379746835443	8.5	3-15,4156-4144;17-20,4141-4138	1-2,4158-4157[UP5];16-16,4143-4142[AILt];21-21,4137-4137[UP3]	.((((..(((((((((((((..&..)))))))))))))-.)))).	CUCGGAGUGGAGUUGCGGAAGA&AUUUUCGCAAUUCCA-AUCGAC	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN3516_c0_g1_4149_TPlot.pdf
TRINITY_DN3516_c0_g1:4154	si_a599	TRINITY_DN3516_c0_g1	4143	4164	4154	-30.40	-21.22	0.698026315789474	11.5	2-4,4163-4161;8-20,4156-4144	1-1,4164-4164[UP5];5-7,4160-4157[AILt];21-21,4143-4143[UP3]	.(((((((((((((....(((.&.)))-...))))))))))))).	GUGGAGUUGCGGAAGACGCUGC&ACAG-AAUUUUCGCAAUUCCAA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN3516_c0_g1_4154_TPlot.pdf
TRINITY_DN3517_c0_g1:90	si_s110	TRINITY_DN3517_c0_g1	79	99	90	-25.80	-16.90	0.655038759689922	8.5	1-14,99-86	15-21,85-79[UP3]	.......((((((((((((((&)))))))))))))).......	GAUUGUGUCUAUUUUCCAGUU&GAUUGGAAAAUAGAAAAAUAG	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s110_TRINITY_DN3517_c0_g1_90_TPlot.pdf
TRINITY_DN35188_c4_g1:146	si_a862	TRINITY_DN35188_c4_g1	135	155	146	-22.70	-15.70	0.691629955947136	10	2-8,154-148;11-19,145-137	1-1,155-155[UP5];9-10,147-146[SIL];20-21,136-135[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	UUGGUCUUUGACCGUUGGAUG&AAUCCAAUUAUUAAAGAUUUA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN35188_c4_g1_146_TPlot.pdf
TRINITY_DN3518_c0_g1:1215	si_a326	TRINITY_DN3518_c0_g1	1204	1224	1215	-26.20	-18.06	0.689312977099237	8.5	1-10,1224-1215;15-21,1210-1204	11-14,1214-1211[SIL]	(((((((....((((((((((&))))))))))....)))))))	GACGAGGCCACGAAAAGUCAU&AUGAUUUUUUUAUUCCUUGUC	4	0.999994967703848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN3518_c0_g1_1215_TPlot.pdf
TRINITY_DN3520_c0_g1:1828	si_a77	TRINITY_DN3520_c0_g1	1817	1837	1828	-22.20	-15.00	0.675675675675676	9.5	3-17,1835-1821	1-2,1837-1836[UP5];18-21,1820-1817[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUGAAAUGAUGGAAGACAAAA&AAUUGUUUUUCAUUAUUAAGA	2	0.999531899565299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3520_c0_g1_1828_TPlot.pdf
TRINITY_DN35218_c0_g1:368	si_a71	TRINITY_DN35218_c0_g1	357	377	368	-23.30	-15.84	0.679828326180257	13.5	1-5,377-373;11-20,367-358	6-10,372-368[SIL];21-21,357-357[UP3]	.((((((((((.....(((((&))))).....)))))))))).	AGAUGAGAGACUGACGGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999993192147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN35218_c0_g1_368_TPlot.pdf
TRINITY_DN35225_c0_g1:279	si_s656	TRINITY_DN35225_c0_g1	267	288	279	-35.20	-23.80	0.676136363636364	10	3-11,286-278;12-17,276-271	1-2,288-287[UP5];x-x,277-277[BULt];18-21,270-267[UP3]	....((((((.(((((((((..&..)))))))))-))))))....	CCUGCGAUCCACCUGAUUGUUC&AUACAAUCGGG-GGAUCGAAUU	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s656_TRINITY_DN35225_c0_g1_279_TPlot.pdf
TRINITY_DN3522_c0_g1:599	si_s84	TRINITY_DN3522_c0_g1	589	608	599	-32.30	-22.80	0.705882352941177	4	1-6,608-603;8-18,601-591;20-21,590-589	7-7,602-602[SIL];19-19,x-x[BULq]	((-(((((((((((.((((((&)))))).))))))))))).))	CG-AGAAGAAGAAAUGAGAGA&UCUUUCCUUUCUUCUUCUUCG	4	0.999999999613727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3522_c0_g1_599_TPlot.pdf
TRINITY_DN3522_c0_g1:600	si_s83	TRINITY_DN3522_c0_g1	589	609	600	-30.90	-22.30	0.72168284789644	5.5	2-7,608-603;9-20,601-590	1-1,609-609[UP5];8-8,602-602[SIL];21-21,589-589[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	CGAGAAGAAGAAAUGAGAGAU&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999935886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3522_c0_g1_600_TPlot.pdf
TRINITY_DN3522_c0_g1:602	si_s81	TRINITY_DN3522_c0_g1	591	611	602	-28.90	-21.10	0.730103806228374	8	4-9,608-603;11-21,601-591	1-3,611-609[UP5];10-10,602-602[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AGAAGAAGAAAUGAGAGAUAC&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999999499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3522_c0_g1_602_TPlot.pdf
TRINITY_DN3523_c0_g1:1190	si_s296	TRINITY_DN3523_c0_g1	1179	1199	1190	-31.60	-21.60	0.683544303797468	9.5	1-10,1199-1190;12-15,1188-1185;17-17,1183-1183	11-11,1189-1189[SIL];16-16,1184-1184[SIL];18-21,1182-1179[UP3]	....(.((((.((((((((((&)))))))))).)))).)....	GGAGUGGCGAGUCCGGUCGAC&GUCGAUUGGAAUUGCGAAAAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN3523_c0_g1_1190_TPlot.pdf
TRINITY_DN3523_c0_g1:12770	si_s292	TRINITY_DN3523_c0_g1	12749	12780	12770	-36.60	-24.30	0.663934426229508	14	1-7,12780-12774;8-16,12772-12764;17-21,12753-12749	x-x,12773-12773[BULt];x-x,12763-12754[BULt]	(((((..........(((((((((.(((((((&)))))))-)))))))))----------)))))	UCGCAAUCUGAUAAAAUUCCAAUCUGAUUGGG&CCUAGUC-GAUUGGAAU----------UGCGA	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN3523_c0_g1_12770_TPlot.pdf
TRINITY_DN3523_c0_g1:162	si_s119	TRINITY_DN3523_c0_g1	149	171	162	-27.40	-17.90	0.653284671532847	5.5	1-11,171-161;12-15,159-156;16-20,154-150	x-x,160-160[BULt];x-x,155-155[BULt];21-21,149-149[UP3]	.(((((.((((.(((((((((((&)))))))))))-))))-))))).	GUAACUGCUUCGUAUUUUUCUGU&AUAGAAAAAUA-GAAG-AGUUGA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN3523_c0_g1_162_TPlot.pdf
TRINITY_DN3523_c0_g1:6730	si_a58	TRINITY_DN3523_c0_g1	6719	6739	6730	-34.60	-26.40	0.763005780346821	7.5	2-8,6738-6732;10-19,6730-6721	1-1,6739-6739[UP5];9-9,6731-6731[SIL];20-21,6720-6719[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	CGUGAAGGAAGCUGGUCGGCG&AGUCGACUCGCUUCUUUCAAA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN3523_c0_g1_6730_TPlot.pdf
TRINITY_DN3523_c0_g1:6731	si_a57	TRINITY_DN3523_c0_g1	6720	6741	6731	-36.60	-26.70	0.729508196721311	7.5	1-2,6741-6740;3-9,6738-6732;11-20,6730-6721	x-x,6739-6739[BULt];10-10,6731-6731[SIL];21-21,6720-6720[UP3]	.((((((((((.(((((((.((&))-))))))).)))))))))).	GUGAAGGAAGCUGGUCGGCGUC&GA-GUCGACUCGCUUCUUUCAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN3523_c0_g1_6731_TPlot.pdf
TRINITY_DN3523_c0_g1:6732	si_a56	TRINITY_DN3523_c0_g1	6721	6742	6732	-38.90	-27.60	0.709511568123393	7	1-3,6742-6740;4-10,6738-6732;12-21,6730-6721	x-x,6739-6739[BULt];11-11,6731-6731[SIL]	((((((((((.(((((((.(((&)))-))))))).))))))))))	UGAAGGAAGCUGGUCGGCGUCU&GGA-GUCGACUCGCUUCUUUCA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN3523_c0_g1_6732_TPlot.pdf
TRINITY_DN3523_c0_g1:7054	si_a399	TRINITY_DN3523_c0_g1	7043	7063	7054	-22.60	-14.70	0.650442477876106	11	2-7,7062-7057;9-18,7055-7046	1-1,7063-7063[UP5];8-8,7056-7056[SIL];19-21,7045-7043[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UCCGACGAAGCAGAUCUGUGA&AUAUAGAAUUGUUUUGUUUAU	2	0.999999961634845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3523_c0_g1_7054_TPlot.pdf
TRINITY_DN3523_c0_g1:7305	si_s65	TRINITY_DN3523_c0_g1	7294	7314	7305	-26.00	-17.10	0.657692307692308	7	1-6,7314-7309;8-20,7307-7295	7-7,7308-7308[SIL];21-21,7294-7294[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UGAAGGAGGUGGAAUUUGCUG&UAGCAACUUCUAUUUUUUUUC	4	0.999999987090159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN3523_c0_g1_7305_TPlot.pdf
TRINITY_DN3523_c0_g1:7968	si_a135	TRINITY_DN3523_c0_g1	7956	7977	7968	-25.70	-17.32	0.673929961089494	12.5	1-10,7977-7968;14-18,7963-7959;20-21,7957-7956	11-13,7967-7964[AILt];19-19,7958-7958[SIL]	((.(((((....((((((((((&))))))))))-...))))).))	GAGGGCGAGUAUGUUGCUGUUG&CAAUAGUAAU-UAAUCGUUGUU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN3523_c0_g1_7968_TPlot.pdf
TRINITY_DN3523_c0_g1:8125	si_a761	TRINITY_DN3523_c0_g1	8108	8134	8125	-30.10	-19.70	0.654485049833887	17	1-12,8134-8123;13-14,8115-8114;16-21,8113-8108	x-x,8122-8116[BULt];15-15,x-x[BULq]	((((((-((.......((((((((((((&))))))))))))-------)).))))))	AAUCGG-CAGAGGCACAGAACCCAAAGG&CCUUUGGGUUUU-------UGAUUGAUU	4	0.999999999978083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN3523_c0_g1_8125_TPlot.pdf
TRINITY_DN3523_c0_g1:8127	si_a759	TRINITY_DN3523_c0_g1	8115	8136	8127	-32.60	-21.60	0.662576687116564	7.5	1-14,8136-8123;15-16,8121-8120	x-x,8122-8122[BULt];17-21,8119-8115[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	AGAGGCACAGAACCCAAAGGGG&CUCCUUUGGGUUUU-UGAUUGA	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN3523_c0_g1_8127_TPlot.pdf
TRINITY_DN3523_c0_g1:8129	si_a757	TRINITY_DN3523_c0_g1	8117	8137	8129	-33.10	-22.30	0.673716012084592	6.5	1-3,8137-8135;5-16,8134-8123;17-18,8121-8120	4-4,x-x[BULq];x-x,8122-8122[BULt];19-21,8119-8117[UP3]	...((.((((((((((((-(((&))).))))))))))))-))...	AGGCACAGAACCCAAAGG-GGU&ACCUCCUUUGGGUUUU-UGAUU	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN3523_c0_g1_8129_TPlot.pdf
TRINITY_DN3523_c0_g1:8130	si_a756	TRINITY_DN3523_c0_g1	8118	8138	8130	-33.10	-22.50	0.6797583081571	6.5	2-4,8137-8135;6-17,8134-8123;18-19,8121-8120	1-1,8138-8138[UP5];5-5,x-x[BULq];x-x,8122-8122[BULt];20-21,8119-8118[UP3]	..((.((((((((((((-(((.&.))).))))))))))))-))..	GGCACAGAACCCAAAGG-GGUC&AACCUCCUUUGGGUUUU-UGAU	3	0.999996082177535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3523_c0_g1_8130_TPlot.pdf
TRINITY_DN35242_c0_g1:153	si_s64	TRINITY_DN35242_c0_g1	142	162	153	-24.10	-16.50	0.684647302904564	9.5	3-15,160-148;17-20,146-143	1-2,162-161[UP5];16-16,147-147[SIL];21-21,142-142[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	UAGGGUGGUGGGAGUUGCUUC&UUAGCAACUUCUAUUUUUUUU	4	0.999999929848069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN35242_c0_g1_153_TPlot.pdf
TRINITY_DN3524_c0_g1:1402	si_s796	TRINITY_DN3524_c0_g1	1391	1411	1402	-30.30	-22.70	0.749174917491749	7.5	1-4,1411-1408;6-19,1406-1393	5-5,1407-1407[SIL];20-21,1392-1391[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GUCGGAGAUGAAAUGCAGGCU&AGCUCGUAUUUUAUCUUCGUU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3524_c0_g1_1402_TPlot.pdf
TRINITY_DN35267_c0_g1:90	si_s16	TRINITY_DN35267_c0_g1	77	99	90	-25.60	-17.60	0.6875	10.5	4-16,96-84;17-20,81-78	1-3,99-97[UP5];x-x,83-82[BULt];21-21,77-77[UP3]	.((((..(((((((((((((...&...)))))))))))))--)))).	AUGCACGGUCAAUAUGGUAGGGA&UUAUUACUAUAUUGAU--UGCAA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN35267_c0_g1_90_TPlot.pdf
TRINITY_DN3526_c0_g1:1278	si_s3	TRINITY_DN3526_c0_g1	1267	1287	1278	-21.20	-14.20	0.669811320754717	9.5	1-15,1287-1273	16-21,1272-1267[UP3]	......(((((((((((((((&)))))))))))))))......	GCUGGGGAUGAGUGGUAUAAA&UUUAUAUUACUUAUUAUUACU	2	0.995260596514365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN3526_c0_g1_1278_TPlot.pdf
TRINITY_DN3526_c0_g1:1580	si_a496	TRINITY_DN3526_c0_g1	1568	1589	1580	-32.40	-21.60	0.666666666666667	14.5	5-11,1585-1579;13-21,1576-1568	1-4,1589-1586[UP5];12-12,1578-1577[AILt]	(((((((((..(((((((....&....)))))))-.)))))))))	GGGAAGACGUCGAGGCGAGUGA&UAUGUCGUUUU-UCGUCUUCCU	2	0.999999525969482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3526_c0_g1_1580_TPlot.pdf
TRINITY_DN35295_c0_g1:458	si_a602	TRINITY_DN35295_c0_g1	441	467	458	-30.80	-20.20	0.655844155844156	9	1-12,467-456;13-15,454-452;16-20,446-442	x-x,455-455[BULt];x-x,451-447[BULt];21-21,441-441[UP3]	.(((((.....(((.((((((((((((&))))))))))))-)))-----))))).	AGAUUGUUGCUGAACUUGCGAGAAUUC&GAAUUUUCGCAA-UUC-----CAAUCG	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN35295_c0_g1_458_TPlot.pdf
TRINITY_DN3529_c0_g1:338	si_a20	TRINITY_DN3529_c0_g1	327	353	338	-26.70	-17.60	0.659176029962547	19.5	2-6,352-348;7-20,341-328	1-1,353-353[UP5];x-x,347-342[BULt];21-21,327-327[UP3]	.((((((((((((((......(((((.&.)))))------)))))))))))))).	CGGAGCUGAAGGUAAAUAAGAGUGGGG&GCCUAU------UUAUUUUUAGUUCUA	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN3529_c0_g1_338_TPlot.pdf
TRINITY_DN352_c0_g1:1094	si_a550	TRINITY_DN352_c0_g1	1077	1103	1094	-30.90	-20.66	0.668608414239482	11.5	2-14,1102-1090;16-21,1082-1077	1-1,1103-1103[UP5];15-15,1089-1083[AILt]	((((((.......(((((((((((((.&.)))))))))))))------.))))))	GGGAGACUACCACGAGGAGAUGGAUUC&CAAUCUAUUUCUUU------AUCUCCC	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN352_c0_g1_1094_TPlot.pdf
TRINITY_DN352_c0_g1:2729	si_s485	TRINITY_DN352_c0_g1	2718	2738	2729	-18.10	-12.80	0.707182320441989	4	2-16,2737-2723;18-21,2721-2718	1-1,2738-2738[UP5];17-17,2722-2722[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	UUUAAAUUUAAGUAAAUGUAA&CUAUAUUUAUUUAAAUAUAAA	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN352_c0_g1_2729_TPlot.pdf
TRINITY_DN352_c1_g2:1916	si_a76	TRINITY_DN352_c1_g2	1905	1925	1916	-21.20	-14.70	0.693396226415094	7	1-15,1925-1911	16-21,1910-1905[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUUAAAUGAAGAACAAUUU&AAAUUGUUUUUCAUUAUUAAG	2	0.999815947376409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN352_c1_g2_1916_TPlot.pdf
TRINITY_DN352_c1_g2:1917	si_a75	TRINITY_DN352_c1_g2	1906	1926	1917	-21.30	-14.80	0.694835680751174	7	2-16,1925-1911	1-1,1926-1926[UP5];17-21,1910-1906[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUUAAAUGAAGAACAAUUUU&CAAAUUGUUUUUCAUUAUUAA	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN352_c1_g2_1917_TPlot.pdf
TRINITY_DN352_c1_g2:1918	si_a74	TRINITY_DN352_c1_g2	1907	1927	1918	-22.20	-14.80	0.666666666666667	8	3-17,1925-1911	1-2,1927-1926[UP5];18-21,1910-1907[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUAAAUGAAGAACAAUUUUA&UCAAAUUGUUUUUCAUUAUUA	3	0.999999998212847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN352_c1_g2_1918_TPlot.pdf
TRINITY_DN352_c1_g2:1919	si_a73	TRINITY_DN352_c1_g2	1908	1928	1919	-21.90	-14.80	0.675799086757991	9	4-18,1925-1911	1-3,1928-1926[UP5];19-21,1910-1908[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUAAAUGAAGAACAAUUUUAG&UUCAAAUUGUUUUUCAUUAUU	2	0.999997118796743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN352_c1_g2_1919_TPlot.pdf
TRINITY_DN352_c1_g2:1920	si_a72	TRINITY_DN352_c1_g2	1909	1929	1920	-21.90	-14.80	0.675799086757991	9.5	5-19,1925-1911	1-4,1929-1926[UP5];20-21,1910-1909[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAAAUGAAGAACAAUUUUAGG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999907035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN352_c1_g2_1920_TPlot.pdf
TRINITY_DN35325_c0_g2:35	si_a402	TRINITY_DN35325_c0_g2	24	44	35	-22.40	-14.60	0.651785714285714	8.5	1-3,44-42;5-16,40-29	4-4,41-41[SIL];17-21,28-24[UP3]	.....((((((((((((.(((&))).)))))))))))).....	UGCGGGAACAGAACAAUACUA&UAGAAUUGUUUUGUUUAUAUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN35325_c0_g2_35_TPlot.pdf
TRINITY_DN35325_c0_g2:39	si_a398	TRINITY_DN35325_c0_g2	28	48	39	-22.40	-14.60	0.651785714285714	11	5-7,44-42;9-20,40-29	1-4,48-45[UP5];8-8,41-41[SIL];21-21,28-28[UP3]	.((((((((((((.(((....&....))).)))))))))))).	GGAACAGAACAAUACUAACAU&AAUAUAGAAUUGUUUUGUUUA	2	0.999999902426026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN35325_c0_g2_39_TPlot.pdf
TRINITY_DN3535_c0_g1:1691	si_a358	TRINITY_DN3535_c0_g1	1680	1702	1691	-29.10	-19.16	0.658419243986254	15	2-6,1701-1697;10-20,1691-1681	1-1,1702-1702[UP5];7-9,1696-1692[AILt];21-21,1680-1680[UP3]	.(((((((((((.....(((((.&.)))))--...))))))))))).	CGGUCCGGUCGAUUCGCGGAAUA&AAUUCU--AUUUUGAUCGGAUCA	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN3535_c0_g1_1691_TPlot.pdf
TRINITY_DN3535_c0_g1:4258	si_s846	TRINITY_DN3535_c0_g1	4247	4268	4258	-37.30	-25.50	0.683646112600536	14	7-9,4262-4260;10-20,4258-4248	1-6,4268-4263[UP5];x-x,4259-4259[BULt];21-21,4247-4247[UP3]	.(((((((((((.(((......&......)))-))))))))))).	GAGGAGUCGACUCCGCCCUGGC&AAAGAAGCG-AGUCGACUCCUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN3535_c0_g1_4258_TPlot.pdf
TRINITY_DN3535_c0_g1:4938	si_a497	TRINITY_DN3535_c0_g1	4925	4947	4938	-32.00	-21.60	0.675	8.5	1-2,4947-4946;4-16,4944-4932;18-21,4928-4925	3-3,4945-4945[SIL];17-17,4931-4929[AILt]	((((...(((((((((((((.((&)).)))))))))))))--.))))	GAGGUGUGGGCGGAGAACGAGAU&AUGUCGUUUUUCGUCU--UCCUU	4	0.999999999999771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3535_c0_g1_4938_TPlot.pdf
TRINITY_DN3537_c0_g1:1453	si_a697	TRINITY_DN3537_c0_g1	1442	1465	1453	-35.50	-23.42	0.659718309859155	11	1-7,1465-1459;10-13,1453-1450;15-21,1448-1442	8-9,1458-1454[AILt];14-14,1449-1449[SIL]	(((((((.((((.....(((((((&)))))))---..)))).)))))))	UGGAAUGGACCAAUGGGUGUGUUC&GAACACA---ACUGGUACAUUCCA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN3537_c0_g1_1453_TPlot.pdf
TRINITY_DN3537_c0_g1:1454	si_a696	TRINITY_DN3537_c0_g1	1443	1466	1454	-36.30	-24.02	0.661707988980716	11	1-8,1466-1459;11-14,1453-1450;16-21,1448-1443	9-10,1458-1454[AILt];15-15,1449-1449[SIL]	((((((.((((.....((((((((&))))))))---..)))).))))))	GGAAUGGACCAAUGGGUGUGUUCG&CGAACACA---ACUGGUACAUUCC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a696_TRINITY_DN3537_c0_g1_1454_TPlot.pdf
TRINITY_DN3537_c0_g1:2066	si_a640	TRINITY_DN3537_c0_g1	2055	2075	2066	-24.10	-15.70	0.651452282157676	7	1-9,2075-2067;11-13,2065-2063;15-20,2061-2056	10-10,2066-2066[SIL];14-14,2062-2062[SIL];21-21,2055-2055[UP3]	.((((((.(((.(((((((((&))))))))).))).)))))).	CGUGUAUAACUGGAAGAAAUC&GAUUUUUUUGAGUAAUAUAUC	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN3537_c0_g1_2066_TPlot.pdf
TRINITY_DN3537_c0_g1:2113	si_a497	TRINITY_DN3537_c0_g1	2103	2122	2113	-32.00	-20.90	0.653125	6	2-10,2121-2113;12-13,2112-2111;15-20,2109-2104	1-1,2122-2122[UP5];11-11,x-x[BULq];14-14,2110-2110[SIL];21-21,2103-2103[UP3]	.((((((.((-(((((((((.&.))))))))).)).)))))).	CAGGAAGUCG-AAAAUGACAA&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3537_c0_g1_2113_TPlot.pdf
TRINITY_DN3537_c0_g1:522	si_a29	TRINITY_DN3537_c0_g1	508	531	522	-31.00	-20.50	0.661290322580645	14.5	1-10,531-522;14-20,515-509	11-13,521-516[AILt];21-21,508-508[UP3]	.(((((((......((((((((((&))))))))))---...))))))).	AACCGGUUGUAUCUGAGCUAGAAA&UUUUUAGUUC---UAAGACCGGUA	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN3537_c0_g1_522_TPlot.pdf
TRINITY_DN35390_c0_g2:144	si_s536	TRINITY_DN35390_c0_g2	133	155	144	-27.70	-19.90	0.71841155234657	12	1-5,155-151;6-17,148-137	x-x,150-149[BULt];18-21,136-133[UP3]	....((((((((((((..(((((&)))))--))))))))))))....	AGGAUGAUCGGAUCGGGCAGGUG&CAUUU--UUGAUCCGAUCAAAAU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN35390_c0_g2_144_TPlot.pdf
TRINITY_DN35394_c0_g5:303	si_a633	TRINITY_DN35394_c0_g5	292	312	303	-26.40	-17.30	0.65530303030303	5.5	1-15,312-298;17-18,297-296;19-20,294-293	16-16,x-x[BULq];x-x,295-295[BULt];21-21,292-292[UP3]	.((.((-(((((((((((((((&))))))))))))))).))-)).	AACAUC-AAAAGAUCGGCAUAG&UUAUGUCGAUUUUUUUGA-GUA	3	0.99999999999317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN35394_c0_g5_303_TPlot.pdf
TRINITY_DN3539_c0_g1:1567	si_a464	TRINITY_DN3539_c0_g1	1556	1576	1567	-19.60	-13.20	0.673469387755102	6.5	3-8,1574-1569;10-21,1567-1556	1-2,1576-1575[UP5];9-9,1568-1568[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GAUGAUUAUAUACUAUAUACG&UAUAUAUAAUAUGUAAUUAUU	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN3539_c0_g1_1567_TPlot.pdf
TRINITY_DN353_c0_g1:163	si_s751	TRINITY_DN353_c0_g1	152	171	163	-29.40	-19.90	0.67687074829932	10	3-4,169-168;6-10,167-163;13-21,160-152	1-2,171-170[UP5];5-5,x-x[BULq];11-12,162-161[SIL]	(((((((((..(((((-((..&..)).)))))..)))))))))	CGUUGUUGUGCUGAGG-CAGA&AUUGACCUUAAAACAACAACG	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s751_TRINITY_DN353_c0_g1_163_TPlot.pdf
TRINITY_DN353_c0_g1:224	si_a570	TRINITY_DN353_c0_g1	213	234	224	-31.90	-21.00	0.658307210031348	7.5	1-8,234-227;9-21,225-213	x-x,226-226[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	UUGCAGAUAUGUGCGUUCAUGG&CCGUGAAU-CGUAUGUUUGUAA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN353_c0_g1_224_TPlot.pdf
TRINITY_DN3541_c0_g1:1270	si_s822	TRINITY_DN3541_c0_g1	1260	1279	1270	-22.30	-15.20	0.681614349775785	3.5	1-13,1279-1267;16-21,1265-1260	14-15,1266-1266[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	GUUGUUA-UUAUUAUUAAGAA&UUCUUAAUAAUGAAAAACAAU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN3541_c0_g1_1270_TPlot.pdf
TRINITY_DN35428_c0_g1:52	si_s63	TRINITY_DN35428_c0_g1	40	61	52	-25.80	-16.80	0.651162790697674	7	1-13,61-49;14-18,47-43	x-x,48-48[BULt];19-21,42-40[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	AAUAAGAUAAGAAGUUGUUGAU&GUUAGCAACUUCU-AUUUUUUU	3	0.999999997674827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN35428_c0_g1_52_TPlot.pdf
TRINITY_DN3542_c0_g1:1288	si_s61	TRINITY_DN3542_c0_g1	1275	1297	1288	-26.50	-20.40	0.769811320754717	8.5	3-14,1295-1284;15-21,1281-1275	1-2,1297-1296[UP5];x-x,1283-1282[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	GAGAAUGCUGAAGUUGCUGGCGA&AAGUUAGCAACUUC--UAUUUUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN3542_c0_g1_1288_TPlot.pdf
TRINITY_DN3542_c0_g1:1289	si_s60	TRINITY_DN3542_c0_g1	1276	1298	1289	-28.20	-19.20	0.680851063829787	10	4-15,1295-1284;16-21,1281-1276	1-3,1298-1296[UP5];x-x,1283-1282[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	AGAAUGCUGAAGUUGCUGGCGAC&CAAGUUAGCAACUUC--UAUUUU	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN3542_c0_g1_1289_TPlot.pdf
TRINITY_DN3542_c0_g1:1312	si_a71	TRINITY_DN3542_c0_g1	1301	1321	1312	-23.30	-16.18	0.694420600858369	10	1-5,1321-1317;9-20,1313-1302	6-8,1316-1314[SIL];21-21,1301-1301[UP3]	.((((((((((((...(((((&)))))...)))))))))))).	CGAUGAAGAACAGGAAGAAGG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3542_c0_g1_1312_TPlot.pdf
TRINITY_DN3542_c0_g1:1340	si_s89	TRINITY_DN3542_c0_g1	1329	1348	1340	-35.30	-23.20	0.657223796033994	6	2-7,1347-1342;9-18,1341-1332	1-1,1348-1348[UP5];8-8,x-x[BULq];19-21,1331-1329[UP3]	...((((((((((-((((((.&.)))))).))))))))))...	UACAGCGAAGAAG-AGAAAGA&CCUUUCUUCUUCUUCGCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3542_c0_g1_1340_TPlot.pdf
TRINITY_DN3542_c0_g1:1341	si_s88	TRINITY_DN3542_c0_g1	1330	1349	1341	-34.80	-23.20	0.666666666666667	7	3-8,1347-1342;10-19,1341-1332	1-2,1349-1348[UP5];9-9,x-x[BULq];20-21,1331-1330[UP3]	..((((((((((-((((((..&..)))))).))))))))))..	ACAGCGAAGAAG-AGAAAGAU&UCCUUUCUUCUUCUUCGCUUC	2	0.999999998999572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3542_c0_g1_1341_TPlot.pdf
TRINITY_DN3542_c0_g1:1343	si_s85	TRINITY_DN3542_c0_g1	1333	1352	1343	-33.80	-22.00	0.650887573964497	11	6-11,1347-1342;13-21,1341-1333	1-5,1352-1348[UP5];12-12,x-x[BULq]	(((((((((-((((((.....&.....)))))).)))))))))	GCGAAGAAG-AGAAAGAUGAU&CUUUCCUUUCUUCUUCUUCGC	2	0.999999999999902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3542_c0_g1_1343_TPlot.pdf
TRINITY_DN3542_c0_g1:1378	si_s312	TRINITY_DN3542_c0_g1	1367	1392	1378	-29.00	-19.30	0.66551724137931	18	4-8,1389-1385;9-20,1379-1368	1-3,1392-1390[UP5];x-x,1384-1380[BULt];21-21,1367-1367[UP3]	.((((((((((((.....(((((...&...)))))-----)))))))))))).	CGGCGAGGAGGACGACGAAGAAUAAA&AAAAUUCU-----GUCCUUCUUGUUA	3	0.999999999982314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3542_c0_g1_1378_TPlot.pdf
TRINITY_DN3543_c0_g1:1395	si_s189	TRINITY_DN3543_c0_g1	1382	1404	1395	-27.90	-20.10	0.720430107526882	7.5	2-9,1403-1396;11-15,1394-1390;16-21,1387-1382	1-1,1404-1404[UP5];10-10,1395-1395[SIL];x-x,1389-1388[BULt]	((((((..(((((.((((((((.&.)))))))).)))))--))))))	CAUUCCUCGAAGUUGUCGUUACA&AGUAACGAUUAUUUU--GGAAUG	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN3543_c0_g1_1395_TPlot.pdf
TRINITY_DN3543_c0_g1:1804	si_a147	TRINITY_DN3543_c0_g1	1793	1813	1804	-30.40	-20.00	0.657894736842105	7	2-14,1812-1800;16-19,1798-1795	1-1,1813-1813[UP5];15-15,1799-1799[SIL];20-21,1794-1793[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	UUACCUGAAGACAACGAUGAA&AUCGUUGUUGUUUUAAGGUCA	3	0.999999861197202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN3543_c0_g1_1804_TPlot.pdf
TRINITY_DN3543_c0_g1:1805	si_a146	TRINITY_DN3543_c0_g1	1794	1814	1805	-29.70	-20.00	0.673400673400673	7.5	3-15,1812-1800;17-20,1798-1795	1-2,1814-1813[UP5];16-16,1799-1799[SIL];21-21,1794-1794[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	UACCUGAAGACAACGAUGAAA&AAUCGUUGUUGUUUUAAGGUC	4	0.999983678376299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN3543_c0_g1_1805_TPlot.pdf
TRINITY_DN3543_c0_g1:1806	si_a145	TRINITY_DN3543_c0_g1	1795	1815	1806	-28.10	-20.00	0.711743772241993	8.5	4-16,1812-1800;18-21,1798-1795	1-3,1815-1813[UP5];17-17,1799-1799[SIL]	((((.(((((((((((((...&...))))))))))))).))))	ACCUGAAGACAACGAUGAAAA&UAAUCGUUGUUGUUUUAAGGU	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN3543_c0_g1_1806_TPlot.pdf
TRINITY_DN3543_c0_g1:1807	si_a144	TRINITY_DN3543_c0_g1	1796	1816	1807	-27.40	-18.90	0.68978102189781	10.5	5-17,1812-1800;19-21,1798-1796	1-4,1816-1813[UP5];18-18,1799-1799[SIL]	(((.(((((((((((((....&....))))))))))))).)))	CCUGAAGACAACGAUGAAAAA&UUAAUCGUUGUUGUUUUAAGG	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN3543_c0_g1_1807_TPlot.pdf
TRINITY_DN3543_c0_g1:1885	si_s76	TRINITY_DN3543_c0_g1	1874	1894	1885	-23.60	-15.60	0.661016949152542	8	3-9,1892-1886;11-21,1884-1874	1-2,1894-1893[UP5];10-10,1885-1885[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AAGAAGGGGGAUAAAGAAAUU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3543_c0_g1_1885_TPlot.pdf
TRINITY_DN3543_c0_g1:1889	si_a551	TRINITY_DN3543_c0_g1	1878	1900	1889	-31.60	-22.10	0.699367088607595	8.5	3-5,1898-1896;6-20,1893-1879	1-2,1900-1899[UP5];x-x,1895-1894[BULt];21-21,1878-1878[UP3]	.(((((((((((((((..(((..&..)))--))))))))))))))).	AGGGGGAUAAAGAAAUUAAGAAU&AAUCU--AUUUCUUUAUCUCCCC	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3543_c0_g1_1889_TPlot.pdf
TRINITY_DN3543_c0_g1:1892	si_a548	TRINITY_DN3543_c0_g1	1881	1903	1892	-27.20	-19.00	0.698529411764706	6.5	1-4,1903-1900;6-8,1898-1896;9-21,1893-1881	5-5,1899-1899[SIL];x-x,1895-1894[BULt]	(((((((((((((..(((.((((&)))).)))--)))))))))))))	GGGAUAAAGAAAUUAAGAAUGAA&UUCAAUCU--AUUUCUUUAUCUC	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN3543_c0_g1_1892_TPlot.pdf
TRINITY_DN3543_c0_g1:305	si_a76	TRINITY_DN3543_c0_g1	294	315	305	-21.20	-14.40	0.679245283018868	5	1-8,315-308;9-18,306-297;20-21,295-294	x-x,307-307[BULt];19-19,296-296[SIL]	((.((((((((((.((((((((&))))))))-)))))))))).))	CUCAAUAAUGGAAUAACAGUUU&AAAUUGUU-UUUCAUUAUUAAG	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3543_c0_g1_305_TPlot.pdf
TRINITY_DN35446_c0_g1:369	si_a70	TRINITY_DN35446_c0_g1	358	384	369	-23.90	-15.74	0.658577405857741	18.5	1-7,384-378;10-21,369-358	8-9,377-370[AILt]	((((((((((((........(((((((&)))))))------..))))))))))))	GAUGAAGGACAAGAAGGUAAUGGAAGA&UCUUUCA------AAUUGUUUUUCAUU	3	0.999999999997931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN35446_c0_g1_369_TPlot.pdf
TRINITY_DN35446_c0_g1:371	si_a68	TRINITY_DN35446_c0_g1	360	386	371	-25.40	-16.84	0.662992125984252	18	1-9,386-378;12-21,369-360	10-11,377-370[AILt]	((((((((((........(((((((((&)))))))))------..))))))))))	UGAAGGACAAGAAGGUAAUGGAAGAAG&CUUCUUUCA------AAUUGUUUUUCA	0	0.493587620767748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN35446_c0_g1_371_TPlot.pdf
TRINITY_DN35447_c1_g1:45	si_a821	TRINITY_DN35447_c1_g1	34	59	45	-26.20	-17.82	0.680152671755725	14	1-7,59-53;9-19,46-36	8-8,52-47[AILt];20-21,35-34[UP3]	..(((((((((((......(((((((&)))))))-----.)))))))))))..	CAUUUUCUUUCCUAUAAAAUCUUCUU&AAGAAGA-----AAGGAAAGAAAAAA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN35447_c1_g1_45_TPlot.pdf
TRINITY_DN3544_c0_g1:1227	si_s92	TRINITY_DN3544_c0_g1	1215	1236	1227	-34.90	-23.90	0.684813753581662	6.5	1-13,1236-1224;14-17,1222-1219	x-x,1223-1223[BULt];18-21,1218-1215[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	GAAAGAGGCCGAAGAGGAAGAA&UUCUUCUUCUUCG-CUUCGGAU	4	0.999999989278955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3544_c0_g1_1227_TPlot.pdf
TRINITY_DN3544_c0_g1:1229	si_s90	TRINITY_DN3544_c0_g1	1217	1238	1229	-35.30	-25.00	0.708215297450425	5.5	2-15,1237-1224;16-19,1222-1219	1-1,1238-1238[UP5];x-x,1223-1223[BULt];20-21,1218-1217[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	AAGAGGCCGAAGAGGAAGAAAA&CUUUCUUCUUCUUCG-CUUCGG	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3544_c0_g1_1229_TPlot.pdf
TRINITY_DN3544_c0_g1:1230	si_s89	TRINITY_DN3544_c0_g1	1218	1239	1230	-35.30	-25.00	0.708215297450425	6.5	3-16,1237-1224;17-20,1222-1219	1-2,1239-1238[UP5];x-x,1223-1223[BULt];21-21,1218-1218[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	AGAGGCCGAAGAGGAAGAAAAU&CCUUUCUUCUUCUUCG-CUUCG	2	0.99958150391399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3544_c0_g1_1230_TPlot.pdf
TRINITY_DN3544_c0_g1:1235	si_s84	TRINITY_DN3544_c0_g1	1224	1247	1235	-32.30	-23.34	0.722600619195046	9.5	1-6,1247-1242;8-21,1237-1224	7-7,1241-1238[AILt]	((((((((((((((....((((((&))))))---.))))))))))))))	CGAAGAGGAAGAAAAUAUGAAGGA&UCUUUC---CUUUCUUCUUCUUCG	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3544_c0_g1_1235_TPlot.pdf
TRINITY_DN3544_c0_g1:1237	si_s69	TRINITY_DN3544_c0_g1	1226	1247	1237	-23.40	-16.10	0.688034188034188	7.5	3-6,1245-1242;7-20,1240-1227	1-2,1247-1246[UP5];x-x,1241-1241[BULt];21-21,1226-1226[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AAGAGGAAGAAAAUAUGAAGGA&AACUUC-UAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3544_c0_g1_1237_TPlot.pdf
TRINITY_DN3544_c0_g1:1238	si_s68	TRINITY_DN3544_c0_g1	1227	1248	1238	-23.10	-16.10	0.696969696969697	8.5	4-7,1245-1242;8-21,1240-1227	1-3,1248-1246[UP5];x-x,1241-1241[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	AGAGGAAGAAAAUAUGAAGGAA&CAACUUC-UAUUUUUUUUCUUU	0	0.46520489484039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3544_c0_g1_1238_TPlot.pdf
TRINITY_DN3544_c0_g1:1268	si_s79	TRINITY_DN3544_c0_g1	1254	1277	1268	-26.20	-18.50	0.706106870229008	9	2-13,1276-1265;14-19,1261-1256	1-1,1277-1277[UP5];x-x,1264-1262[BULt];20-21,1255-1254[UP3]	..((((((...((((((((((((.&.))))))))))))---))))))..	AUGGAGAGAACAGGAGAGAAAAGC&UUUUUUCUUUCCU---UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3544_c0_g1_1268_TPlot.pdf
TRINITY_DN3544_c0_g1:732	si_a410	TRINITY_DN3544_c0_g1	722	741	732	-17.80	-12.70	0.713483146067416	6.5	2-16,740-726;18-21,725-722	1-1,741-741[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	UUUA-UUAGGUAUAGACGGAG&UUUUGUUUAUAUUUAAAUAAA	2	0.999520101235378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3544_c0_g1_732_TPlot.pdf
TRINITY_DN3545_c0_g1:4812	si_a786	TRINITY_DN3545_c0_g1	4801	4821	4812	-26.60	-18.50	0.695488721804511	8	2-6,4820-4816;8-14,4814-4808;16-21,4806-4801	1-1,4821-4821[UP5];7-7,4815-4815[SIL];15-15,4807-4807[SIL]	((((((.(((((((.(((((.&.))))).))))))).))))))	GGAAGAAGGAGAAGAGGAAGG&UCUUCUAUUUUUCUAUUUUCC	4	0.999999980084876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3545_c0_g1_4812_TPlot.pdf
TRINITY_DN3545_c0_g1:4843	si_a326	TRINITY_DN3545_c0_g1	4832	4852	4843	-26.20	-19.10	0.729007633587786	7	1-2,4852-4851;4-11,4849-4842;13-21,4840-4832	3-3,4850-4850[SIL];12-12,4841-4841[SIL]	(((((((((.((((((((.((&)).)))))))).)))))))))	GACAAGGAAGAAAAGGGUGAU&AUGAUUUUUUUAUUCCUUGUC	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN3545_c0_g1_4843_TPlot.pdf
TRINITY_DN3545_c0_g1:4878	si_s797	TRINITY_DN3545_c0_g1	4867	4887	4878	-30.00	-20.20	0.673333333333333	9	1-4,4887-4884;6-7,4882-4881;9-10,4879-4878;12-20,4876-4868	5-5,4883-4883[SIL];8-8,4880-4880[SIL];11-11,4877-4877[SIL];21-21,4867-4867[UP3]	.(((((((((.((.((.((((&)))).)).)).))))))))).	AGGCGAAGAUCAAUUGGGAGC&GCUCGUAUUUUAUCUUCGUUA	4	0.999997606512646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3545_c0_g1_4878_TPlot.pdf
TRINITY_DN3545_c0_g1:4879	si_s796	TRINITY_DN3545_c0_g1	4868	4888	4879	-30.30	-19.80	0.653465346534653	9	2-5,4887-4884;7-8,4882-4881;10-11,4879-4878;13-21,4876-4868	1-1,4888-4888[UP5];6-6,4883-4883[SIL];9-9,4880-4880[SIL];12-12,4877-4877[SIL]	(((((((((.((.((.((((.&.)))).)).)).)))))))))	GGCGAAGAUCAAUUGGGAGCA&AGCUCGUAUUUUAUCUUCGUU	2	0.999963954709493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3545_c0_g1_4879_TPlot.pdf
TRINITY_DN3545_c0_g1:5299	si_a148	TRINITY_DN3545_c0_g1	5287	5308	5299	-30.30	-20.60	0.67986798679868	9	1-11,5308-5298;12-19,5296-5289	x-x,5297-5297[BULt];20-21,5288-5287[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AAGAUUUUAGCAGCGACGACGA&UCGUUGUUGUU-UUAAGGUCAA	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN3545_c0_g1_5299_TPlot.pdf
TRINITY_DN3547_c0_g1:2155	si_a307	TRINITY_DN3547_c0_g1	2139	2164	2155	-33.00	-23.00	0.696969696969697	12	1-11,2164-2154;12-15,2149-2146;17-21,2143-2139	x-x,2153-2150[BULt];16-16,2145-2144[AILt]	(((((..((((....(((((((((((&)))))))))))----))))-.)))))	GUGGAGAGAAUUAUACCAAGCGGAUC&GAUUCGCUUGG----AUUU-AUCCAU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN3547_c0_g1_2155_TPlot.pdf
TRINITY_DN3547_c0_g1:2160	si_a302	TRINITY_DN3547_c0_g1	2149	2169	2160	-28.20	-18.50	0.656028368794326	15	6-16,2164-2154	1-5,2169-2165[UP5];17-21,2153-2149[UP3]	.....(((((((((((.....&.....))))))))))).....	UUAUACCAAGCGGAUCCUGCA&AAAAAGAUUCGCUUGGAUUUA	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN3547_c0_g1_2160_TPlot.pdf
TRINITY_DN3547_c0_g1:2162	si_a300	TRINITY_DN3547_c0_g1	2151	2171	2162	-28.20	-18.50	0.656028368794326	17	8-18,2164-2154	1-7,2171-2165[UP5];19-21,2153-2151[UP3]	...(((((((((((.......&.......)))))))))))...	AUACCAAGCGGAUCCUGCAAC&UAAAAAAGAUUCGCUUGGAUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN3547_c0_g1_2162_TPlot.pdf
TRINITY_DN3548_c0_g1:174	si_a745	TRINITY_DN3548_c0_g1	163	187	174	-42.00	-30.66	0.73	16	1-8,187-180;11-11,173-173;14-20,170-164	9-10,179-174[AILt];12-13,172-171[SIL];21-21,163-163[UP3]	.(((((((..(......((((((((&))))))))----..)..))))))).	UAAGGAGGGGCGAACCGGGCCAGGG&CCCUGGCC----AUGAACCUCCUUU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN3548_c0_g1_174_TPlot.pdf
TRINITY_DN35496_c0_g1:146	si_a457	TRINITY_DN35496_c0_g1	132	155	146	-23.50	-15.30	0.651063829787234	13.5	1-10,155-146;14-21,139-132	11-13,145-140[AILt]	((((((((......((((((((((&))))))))))---...))))))))	ACGUAUUAAUACCGGUAGCAACAA&UUGUUGUUAU---AUAUAAUAUGU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN35496_c0_g1_146_TPlot.pdf
TRINITY_DN3549_c0_g1:1066	si_s212	TRINITY_DN3549_c0_g1	1054	1076	1066	-38.70	-26.70	0.689922480620155	7	1-6,1076-1071;7-11,1069-1065;12-21,1063-1054	x-x,1070-1070[BULt];x-x,1064-1064[BULt]	((((((((((.(((((.((((((&))))))-)))))-))))))))))	UGCGGUUUUGAAAUACUAGCUGG&CCAGUU-GUGUU-CGAAACCGCG	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN3549_c0_g1_1066_TPlot.pdf
TRINITY_DN3549_c0_g1:1294	si_s499	TRINITY_DN3549_c0_g1	1283	1303	1294	-22.60	-15.70	0.694690265486726	6	1-5,1303-1299;8-11,1296-1293;13-21,1291-1283	6-7,1298-1297[SIL];12-12,1292-1292[SIL]	(((((((((.((((..(((((&)))))..)))).)))))))))	AUAGAAUUGAUUUGGAUAUAU&AUAUAAACAAAACAAUUCUAU	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN3549_c0_g1_1294_TPlot.pdf
TRINITY_DN354_c0_g2:2420	si_a68	TRINITY_DN354_c0_g2	2409	2429	2420	-25.40	-16.90	0.665354330708661	3	1-7,2429-2423;9-12,2421-2418;14-21,2416-2409	8-8,2422-2422[SIL];13-13,2417-2417[SIL]	((((((((.((((.(((((((&))))))).)))).))))))))	UGAAAAACCAUUUCAAAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999996719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN354_c0_g2_2420_TPlot.pdf
TRINITY_DN354_c0_g2:2787	si_a559	TRINITY_DN354_c0_g2	2776	2796	2787	-36.80	-24.00	0.652173913043478	6.5	2-12,2795-2785;13-14,2783-2782;16-20,2781-2777	1-1,2796-2796[UP5];x-x,2784-2784[BULt];15-15,x-x[BULq];21-21,2776-2776[UP3]	.(((((-((.(((((((((((.&.)))))))))))-)).))))).	AGAUUC-UGAGGGAGGUAAAGG&UCUUUAUCUCCC-CGUGAAUCG	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN354_c0_g2_2787_TPlot.pdf
TRINITY_DN354_c0_g2:2793	si_a553	TRINITY_DN354_c0_g2	2781	2803	2793	-33.70	-23.20	0.688427299703264	8	1-8,2803-2796;9-18,2794-2785;19-20,2783-2782	x-x,2795-2795[BULt];x-x,2784-2784[BULt];21-21,2781-2781[UP3]	.((.((((((((((.((((((((&))))))))-))))))))))-)).	CUGAGGGAGGUAAAGGAGGUGGA&UCUAUUUC-UUUAUCUCCC-CGU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN354_c0_g2_2793_TPlot.pdf
TRINITY_DN354_c0_g2:2794	si_a552	TRINITY_DN354_c0_g2	2782	2804	2794	-33.10	-23.10	0.697885196374622	8	2-9,2803-2796;10-19,2794-2785;20-21,2783-2782	1-1,2804-2804[UP5];x-x,2795-2795[BULt];x-x,2784-2784[BULt]	((.((((((((((.((((((((.&.))))))))-))))))))))-))	UGAGGGAGGUAAAGGAGGUGGAA&AUCUAUUUC-UUUAUCUCCC-CG	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN354_c0_g2_2794_TPlot.pdf
TRINITY_DN354_c0_g2:2796	si_a551	TRINITY_DN354_c0_g2	2784	2805	2796	-31.60	-23.00	0.727848101265823	9.5	3-10,2803-2796;11-20,2794-2785	1-2,2805-2804[UP5];x-x,2795-2795[BULt];21-21,2784-2784[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	AGGGAGGUAAAGGAGGUGGAAA&AAUCUAUUUC-UUUAUCUCCCC	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN354_c0_g2_2796_TPlot.pdf
TRINITY_DN354_c0_g2:2797	si_a550	TRINITY_DN354_c0_g2	2785	2806	2797	-30.90	-23.00	0.744336569579288	10.5	4-11,2803-2796;12-21,2794-2785	1-3,2806-2804[UP5];x-x,2795-2795[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	GGGAGGUAAAGGAGGUGGAAAA&CAAUCUAUUUC-UUUAUCUCCC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN354_c0_g2_2797_TPlot.pdf
TRINITY_DN354_c0_g2:2804	si_a787	TRINITY_DN354_c0_g2	2793	2814	2804	-26.30	-17.90	0.680608365019011	9	1-7,2814-2808;8-19,2806-2795	x-x,2807-2807[BULt];20-21,2794-2793[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AAGGAGGUGGAAAAGGUGGAGG&CUUCUAU-UUUUCUAUUUUCCA	3	0.999999999948287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN354_c0_g2_2804_TPlot.pdf
TRINITY_DN354_c0_g2:2805	si_a786	TRINITY_DN354_c0_g2	2794	2815	2805	-26.60	-19.50	0.733082706766917	8	1-8,2815-2808;9-20,2806-2795	x-x,2807-2807[BULt];21-21,2794-2794[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	AGGAGGUGGAAAAGGUGGAGGA&UCUUCUAU-UUUUCUAUUUUCC	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN354_c0_g2_2805_TPlot.pdf
TRINITY_DN354_c0_g2:2806	si_a785	TRINITY_DN354_c0_g2	2795	2816	2806	-25.90	-19.70	0.760617760617761	8	2-9,2815-2808;10-21,2806-2795	1-1,2816-2816[UP5];x-x,2807-2807[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	GGAGGUGGAAAAGGUGGAGGAA&CUCUUCUAU-UUUUCUAUUUUC	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN354_c0_g2_2806_TPlot.pdf
TRINITY_DN354_c0_g2:2807	si_s69	TRINITY_DN354_c0_g2	2795	2816	2807	-23.40	-16.40	0.700854700854701	10	3-16,2814-2801;17-21,2799-2795	1-2,2816-2815[UP5];x-x,2800-2800[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GGAGGUGGAAAAGGUGGAGGAA&AACUUCUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN354_c0_g2_2807_TPlot.pdf
TRINITY_DN354_c0_g2:2818	si_s81	TRINITY_DN354_c0_g2	2807	2827	2818	-28.90	-21.50	0.743944636678201	6.5	1-6,2827-2822;8-18,2820-2810;20-21,2808-2807	7-7,2821-2821[SIL];19-19,2809-2809[SIL]	((.(((((((((((.((((((&)))))).))))))))))).))	GGUGGAGGAAAGGGUGGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	0.999999999391695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN354_c0_g2_2818_TPlot.pdf
TRINITY_DN354_c0_g2:2819	si_s80	TRINITY_DN354_c0_g2	2808	2828	2819	-28.20	-20.80	0.73758865248227	6.5	1-7,2828-2822;9-19,2820-2810;21-21,2808-2808	8-8,2821-2821[SIL];20-20,2809-2809[SIL]	(.(((((((((((.(((((((&))))))).))))))))))).)	GUGGAGGAAAGGGUGGAAAAG&UUUUUCUUUCCUUUCUUCUUC	3	0.999999999986128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN354_c0_g2_2819_TPlot.pdf
TRINITY_DN354_c0_g2:2820	si_s79	TRINITY_DN354_c0_g2	2809	2829	2820	-26.20	-20.90	0.797709923664122	8	2-8,2828-2822;10-20,2820-2810	1-1,2829-2829[UP5];9-9,2821-2821[SIL];21-21,2809-2809[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UGGAGGAAAGGGUGGAAAAGG&UUUUUUCUUUCCUUUCUUCUU	2	0.999229893489761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN354_c0_g2_2820_TPlot.pdf
TRINITY_DN354_c0_g2:2822	si_s77	TRINITY_DN354_c0_g2	2811	2831	2822	-25.50	-21.80	0.854901960784314	7	1-10,2831-2822;12-21,2820-2811	11-11,2821-2821[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	GAGGAAAGGGUGGAAAAGGAG&UUUUUUUUCUUUCCUUUCUUC	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN354_c0_g2_2822_TPlot.pdf
TRINITY_DN354_c0_g2:2823	si_s76	TRINITY_DN354_c0_g2	2812	2832	2823	-23.60	-18.60	0.788135593220339	8	2-11,2831-2822;13-21,2820-2812	1-1,2832-2832[UP5];12-12,2821-2821[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AGGAAAGGGUGGAAAAGGAGG&AUUUUUUUUCUUUCCUUUCUU	4	0.99999999567702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN354_c0_g2_2823_TPlot.pdf
TRINITY_DN354_c0_g3:1532	si_a310	TRINITY_DN354_c0_g3	1521	1541	1532	-33.70	-22.30	0.661721068249258	7	1-3,1541-1539;5-10,1537-1532;12-19,1530-1523	4-4,1538-1538[SIL];11-11,1531-1531[SIL];20-21,1522-1521[UP3]	..((((((((.((((((.(((&))).)))))).))))))))..	ACCAUGGAUACAUCCAGUCGA&UCGCUUGGAUUUAUCCAUGAU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN354_c0_g3_1532_TPlot.pdf
TRINITY_DN35505_c0_g1:440	si_a461	TRINITY_DN35505_c0_g1	429	449	440	-21.50	-15.00	0.697674418604651	8	4-18,446-432	1-3,449-447[UP5];19-21,431-429[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUGUACAUAUUAUAUAUAUAA&UGUUAUAUAUAAUAUGUAAUU	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN35505_c0_g1_440_TPlot.pdf
TRINITY_DN35506_c0_g1:302	si_a406	TRINITY_DN35506_c0_g1	291	311	302	-19.80	-13.00	0.656565656565657	10	3-18,309-294	1-2,311-310[UP5];19-21,293-291[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAAAAUAUGAAUAAGAUAGA&AUUGUUUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN35506_c0_g1_302_TPlot.pdf
TRINITY_DN35506_c0_g1:303	si_a405	TRINITY_DN35506_c0_g1	292	312	303	-19.80	-13.00	0.656565656565657	10.5	4-19,309-294	1-3,312-310[UP5];20-21,293-292[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAAAAUAUGAAUAAGAUAGAU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN35506_c0_g1_303_TPlot.pdf
TRINITY_DN35506_c0_g1:338	si_s809	TRINITY_DN35506_c0_g1	323	347	338	-28.50	-21.00	0.736842105263158	11.5	1-12,347-336;13-18,331-326	x-x,335-332[BULt];19-21,325-323[UP3]	...((((((....((((((((((((&))))))))))))----))))))...	UGAAGGAAAUUUUAGGUAACGAAGA&UCUUCGUUACCU----UUUCUUAAU	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN35506_c0_g1_338_TPlot.pdf
TRINITY_DN35506_c0_g1:339	si_s808	TRINITY_DN35506_c0_g1	324	348	339	-28.60	-22.30	0.77972027972028	6.5	1-13,348-336;14-19,331-326	x-x,335-332[BULt];20-21,325-324[UP3]	..((((((....(((((((((((((&)))))))))))))----))))))..	GAAGGAAAUUUUAGGUAACGAAGAU&AUCUUCGUUACCU----UUUCUUAA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN35506_c0_g1_339_TPlot.pdf
TRINITY_DN35506_c0_g1:347	si_s800	TRINITY_DN35506_c0_g1	336	356	347	-29.70	-23.00	0.774410774410774	8	5-21,352-336	1-4,356-353[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGGUAACGAAGAUAAAGGAAA&CGUAUUUUAUCUUCGUUACCU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN35506_c0_g1_347_TPlot.pdf
TRINITY_DN35506_c0_g1:394	si_a786	TRINITY_DN35506_c0_g1	383	403	394	-26.60	-17.40	0.654135338345865	5	1-6,403-398;8-19,396-385	7-7,397-397[SIL];20-21,384-383[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	GAAGAAUGGAAAAAGAGAAGA&UCUUCUAUUUUUCUAUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN35506_c0_g1_394_TPlot.pdf
TRINITY_DN35506_c0_g1:402	si_s71	TRINITY_DN35506_c0_g1	389	411	402	-25.70	-21.00	0.817120622568093	5.5	1-17,411-395;18-20,392-390	x-x,394-393[BULt];21-21,389-389[UP3]	.(((..(((((((((((((((((&)))))))))))))))))--))).	UGGAAAAAGAGAAGAAAUAGGAG&CUUCUAUUUUUUUUCUU--UCCU	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN35506_c0_g1_402_TPlot.pdf
TRINITY_DN3550_c0_g2:2748	si_s810	TRINITY_DN3550_c0_g2	2736	2757	2748	-27.90	-19.20	0.688172043010753	10.5	1-11,2757-2747;12-15,2745-2742	x-x,2746-2746[BULt];16-21,2741-2736[UP3]	......((((.(((((((((((&)))))))))))-))))......	GAUAACGAGGCAGGUAACGAGG&CUUCGUUACCU-UUUCUUAAUA	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN3550_c0_g2_2748_TPlot.pdf
TRINITY_DN3552_c0_g1:1338	si_a77	TRINITY_DN3552_c0_g1	1327	1347	1338	-22.20	-14.50	0.653153153153153	11.5	5-18,1343-1330	1-4,1347-1344[UP5];19-21,1329-1327[UP3]	...((((((((((((((....&....))))))))))))))...	GAAUAAUGAUGAAAGACUGAG&AAUUGUUUUUCAUUAUUAAGA	3	0.999999998944216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3552_c0_g1_1338_TPlot.pdf
TRINITY_DN3553_c0_g1:1049	si_a632	TRINITY_DN3553_c0_g1	1038	1061	1049	-26.10	-17.62	0.675095785440613	13	2-8,1060-1054;11-21,1048-1038	1-1,1061-1061[UP5];9-10,1053-1049[AILt]	(((((((((((.....(((((((.&.)))))))---..)))))))))))	ACUCAAAAAGAGAGGAGACAUGAC&AUUAUGUC---GAUUUUUUUGAGU	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN3553_c0_g1_1049_TPlot.pdf
TRINITY_DN3553_c0_g1:388	si_a284	TRINITY_DN3553_c0_g1	377	397	388	-28.30	-19.50	0.68904593639576	11	3-4,395-394;6-17,392-381	1-2,397-396[UP5];5-5,393-393[SIL];18-21,380-377[UP3]	....((((((((((((.((..&..)).))))))))))))....	UCAAGGAUCCGAGCGAACUGU&AAAGAUCGCUUGGAUUUAAAA	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN3553_c0_g1_388_TPlot.pdf
TRINITY_DN3553_c0_g1:4312	si_s100	TRINITY_DN3553_c0_g1	4301	4321	4312	-33.70	-27.70	0.821958456973294	7.5	1-16,4321-4306	17-21,4305-4301[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUAGCCGAUCUGGAGCGAAG&CUUCGCUUCGGAUUGGAAAAU	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN3553_c0_g1_4312_TPlot.pdf
TRINITY_DN3553_c0_g1:4314	si_s98	TRINITY_DN3553_c0_g1	4303	4323	4314	-34.70	-29.20	0.84149855907781	6.5	1-18,4323-4306	19-21,4305-4303[UP3]	...((((((((((((((((((&))))))))))))))))))...	UAGCCGAUCUGGAGCGAAGGA&UUCUUCGCUUCGGAUUGGAAA	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN3553_c0_g1_4314_TPlot.pdf
TRINITY_DN3553_c0_g1:4855	si_a675	TRINITY_DN3553_c0_g1	4843	4865	4855	-34.00	-22.40	0.658823529411765	8.5	1-5,4865-4861;6-8,4859-4857;11-14,4854-4851;15-21,4849-4843	x-x,4860-4860[BULt];9-10,4856-4855[SIL];x-x,4850-4850[BULt]	(((((((.((((..(((.(((((&)))))-)))..))))-)))))))	AAGCCGCUGUGACGAAGCGAGUC&GAUUC-CUUAUUCAC-GCGGUUU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN3553_c0_g1_4855_TPlot.pdf
TRINITY_DN3553_c0_g1:4877	si_s638	TRINITY_DN3553_c0_g1	4865	4886	4877	-40.30	-26.90	0.667493796526055	8	1-11,4886-4876;13-13,4874-4874;14-19,4872-4867	12-12,4875-4875[SIL];x-x,4873-4873[BULt];20-21,4866-4865[UP3]	..((((((.(.(((((((((((&))))))))))).)-))))))..	CCUCGAGGUGGAGACGCUUAUG&CGUAGGCGUUUGC-CCUCGAUA	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN3553_c0_g1_4877_TPlot.pdf
TRINITY_DN3553_c0_g1:4878	si_s637	TRINITY_DN3553_c0_g1	4866	4887	4878	-40.90	-26.90	0.657701711491443	7	2-12,4886-4876;14-14,4874-4874;15-20,4872-4867	1-1,4887-4887[UP5];13-13,4875-4875[SIL];x-x,4873-4873[BULt];21-21,4866-4866[UP3]	.((((((.(.(((((((((((.&.))))))))))).)-)))))).	CUCGAGGUGGAGACGCUUAUGC&UCGUAGGCGUUUGC-CCUCGAU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN3553_c0_g1_4878_TPlot.pdf
TRINITY_DN3555_c0_g1:531	si_s773	TRINITY_DN3555_c0_g1	518	540	531	-23.10	-15.80	0.683982683982684	9.5	1-11,540-530;12-17,527-522	x-x,529-528[BULt];18-21,521-518[UP3]	....((((((..(((((((((((&)))))))))))--))))))....	UUAAAUGGCAACAUAGUAAUUGA&UUAAUUACUAU--UGCUAUAAAA	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN3555_c0_g1_531_TPlot.pdf
TRINITY_DN3556_c0_g2:257	si_s75	TRINITY_DN3556_c0_g2	246	266	257	-24.00	-15.60	0.65	17	8-20,259-247	1-7,266-260[UP5];21-21,246-246[UP3]	.(((((((((((((.......&.......))))))))))))).	CGGAGGGGGAGAAGCUGUCGU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3556_c0_g2_257_TPlot.pdf
TRINITY_DN3556_c0_g2:322	si_a840	TRINITY_DN3556_c0_g2	311	331	322	-28.20	-18.60	0.659574468085106	15	7-15,325-317;18-21,314-311	1-6,331-326[UP5];16-17,316-315[SIL]	((((..(((((((((......&......)))))))))..))))	CAGGGCGGCGACUUCACCGCG&AAAAUAGAAGUUGCUAACUUG	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a840_TRINITY_DN3556_c0_g2_322_TPlot.pdf
TRINITY_DN3556_c0_g3:6775	si_a641	TRINITY_DN3556_c0_g3	6764	6784	6775	-23.60	-16.10	0.682203389830509	11	4-7,6781-6778;9-21,6776-6764	1-3,6784-6782[UP5];8-8,6777-6777[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UGAUGUAUUGCUCCAGAGCAA&AUUUUUUUGAGUAAUAUAUCG	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN3556_c0_g3_6775_TPlot.pdf
TRINITY_DN3556_c0_g3:975	si_s268	TRINITY_DN3556_c0_g3	964	984	975	-26.10	-17.20	0.659003831417624	8	2-5,983-980;7-16,978-969	1-1,984-984[UP5];6-6,979-979[SIL];17-21,968-964[UP3]	.....((((((((((.((((.&.)))).)))))))))).....	GGGAGGUCGAUUUUUAUGAGC&ACUCAAAAAAAUCGACAUAAU	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s268_TRINITY_DN3556_c0_g3_975_TPlot.pdf
TRINITY_DN35578_c0_g2:681	si_a398	TRINITY_DN35578_c0_g2	669	690	681	-22.40	-15.20	0.678571428571429	7.5	3-13,688-678;14-18,676-672	1-2,690-689[UP5];x-x,677-677[BULt];19-21,671-669[UP3]	...(((((.(((((((((((..&..)))))))))))-)))))...	UUCGCAAAUACAAUUCUAUAAU&AAUAUAGAAUUGU-UUUGUUUA	4	0.999999762880908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN35578_c0_g2_681_TPlot.pdf
TRINITY_DN3557_c0_g1:2160	si_s479	TRINITY_DN3557_c0_g1	2149	2168	2160	-26.40	-18.90	0.715909090909091	3.5	2-6,2167-2163;8-21,2162-2149	1-1,2168-2168[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	UUUAAAUGAAUAUA-GAUCCU&CGGAUCCUAUAUUUAUUUAAA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN3557_c0_g1_2160_TPlot.pdf
TRINITY_DN3557_c0_g1:2303	si_a398	TRINITY_DN3557_c0_g1	2292	2312	2303	-22.40	-15.80	0.705357142857143	11	6-21,2307-2292	1-5,2312-2308[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGGAUAGAACAAUUCUUCAUA&AAUAUAGAAUUGUUUUGUUUA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3557_c0_g1_2303_TPlot.pdf
TRINITY_DN3558_c0_g1:1091	si_a600	TRINITY_DN3558_c0_g1	1076	1100	1091	-29.70	-21.30	0.717171717171717	11	1-4,1100-1097;6-10,1095-1091;11-21,1086-1076	5-5,1096-1096[SIL];x-x,1090-1087[BULt]	(((((((((((....(((((.((((&)))).)))))----)))))))))))	AUUGGAAUUGCGUCGGAAGAAUCUG&CAGAAUUUUC----GCAAUUCCAAU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN3558_c0_g1_1091_TPlot.pdf
TRINITY_DN3558_c0_g1:1092	si_a599	TRINITY_DN3558_c0_g1	1077	1101	1092	-30.40	-21.60	0.710526315789474	11	1-5,1101-1097;7-11,1095-1091;12-21,1086-1077	6-6,1096-1096[SIL];x-x,1090-1087[BULt]	((((((((((....(((((.(((((&))))).)))))----))))))))))	UUGGAAUUGCGUCGGAAGAAUCUGU&ACAGAAUUUUC----GCAAUUCCAA	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN3558_c0_g1_1092_TPlot.pdf
TRINITY_DN3558_c0_g1:1093	si_a598	TRINITY_DN3558_c0_g1	1078	1102	1093	-32.30	-22.10	0.68421052631579	11.5	1-6,1102-1097;8-12,1095-1091;13-21,1086-1078	7-7,1096-1096[SIL];x-x,1090-1087[BULt]	(((((((((....(((((.((((((&)))))).)))))----)))))))))	UGGAAUUGCGUCGGAAGAAUCUGUU&GACAGAAUUUUC----GCAAUUCCA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN3558_c0_g1_1093_TPlot.pdf
TRINITY_DN3558_c0_g1:1153	si_a453	TRINITY_DN3558_c0_g1	1142	1162	1153	-21.10	-14.00	0.663507109004739	12	4-16,1159-1147	1-3,1162-1160[UP5];17-21,1146-1142[UP3]	.....(((((((((((((...&...))))))))))))).....	GCUGGAUAUGACGACAAUAUU&AUAAUUGUUGUUAUAUAUAAU	4	0.999999980084876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN3558_c0_g1_1153_TPlot.pdf
TRINITY_DN3558_c0_g1:1641	si_a409	TRINITY_DN3558_c0_g1	1630	1650	1641	-19.50	-12.90	0.661538461538462	6.5	1-2,1650-1649;4-8,1647-1643;10-20,1641-1631	3-3,1648-1648[SIL];9-9,1642-1642[SIL];21-21,1630-1630[UP3]	.(((((((((((.(((((.((&)).))))).))))))))))).	AUAUUUGAAUAUUAACGAUAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3558_c0_g1_1641_TPlot.pdf
TRINITY_DN3558_c0_g1:961	si_a357	TRINITY_DN3558_c0_g1	948	970	961	-28.80	-18.80	0.652777777777778	13	4-10,967-961;11-20,958-949	1-3,970-968[UP5];x-x,960-959[BULt];21-21,948-948[UP3]	.((((((((((..(((((((...&...)))))))--)))))))))).	UAUCCGAUCAAUUGAUGGAGGGA&UAAUUCUAUU--UUGAUCGGAUC	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN3558_c0_g1_961_TPlot.pdf
TRINITY_DN3558_c0_g1:962	si_a356	TRINITY_DN3558_c0_g1	949	971	962	-26.90	-18.80	0.698884758364312	14	5-11,967-961;12-21,958-949	1-4,971-968[UP5];x-x,960-959[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	AUCCGAUCAAUUGAUGGAGGGAU&UUAAUUCUAUU--UUGAUCGGAU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN3558_c0_g1_962_TPlot.pdf
TRINITY_DN3559_c0_g1:5321	si_a635	TRINITY_DN3559_c0_g1	5310	5330	5321	-26.10	-18.20	0.697318007662835	9	3-18,5328-5313	1-2,5330-5329[UP5];19-21,5312-5310[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGAACUCAAAAAAGUUGAUUU&AUGUCGAUUUUUUUGAGUAAU	4	0.999978654488071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN3559_c0_g1_5321_TPlot.pdf
TRINITY_DN3559_c0_g1:5336	si_s490	TRINITY_DN3559_c0_g1	5325	5345	5336	-17.80	-12.20	0.685393258426966	6	1-16,5345-5330	17-21,5329-5325[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGAUUUUUAUAUUUAGAUAAA&UUUAUUUAAAUAUAAACAAAA	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN3559_c0_g1_5336_TPlot.pdf
TRINITY_DN3559_c0_g1:5545	si_s888	TRINITY_DN3559_c0_g1	5533	5554	5545	-26.80	-20.40	0.761194029850746	8	4-16,5551-5539;17-20,5537-5534	1-3,5554-5552[UP5];x-x,5538-5538[BULt];21-21,5533-5533[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	UGGAGUGAAGCCUAUUUAUAUG&AAAAUAAAUAGGCUUU-CUCUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN3559_c0_g1_5545_TPlot.pdf
TRINITY_DN355_c0_g1:1508	si_s86	TRINITY_DN355_c0_g1	1496	1517	1508	-32.90	-25.00	0.759878419452888	7.5	4-18,1514-1500;19-21,1498-1496	1-3,1517-1515[UP5];x-x,1499-1499[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	GGCUGGGGAAGAAGAAAGGCGU&UUUCCUUUCUUCUUCUUC-GCU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN355_c0_g1_1508_TPlot.pdf
TRINITY_DN35602_c0_g1:89	si_s457	TRINITY_DN35602_c0_g1	78	98	89	-30.00	-20.10	0.67	10	4-14,95-85;16-20,83-79	1-3,98-96[UP5];15-15,84-84[SIL];21-21,78-78[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	CGGGUGAGAGGUAGUUGUCCU&ACAACAAUUAUCUCAUAUCCA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN35602_c0_g1_89_TPlot.pdf
TRINITY_DN35602_c0_g1:90	si_a162	TRINITY_DN35602_c0_g1	76	98	90	-37.60	-25.30	0.672872340425532	11	1-3,98-96;5-7,94-92;9-12,91-88;13-21,84-76	4-4,95-95[SIL];8-8,x-x[BULq];x-x,87-85[BULt]	(((((((((...((((-(((.(((&))).))).))))---)))))))))	GACGGGUGAGAGGUAG-UUGUCCU&AGGUCAAUCUAU---UCACCCGUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a162_TRINITY_DN35602_c0_g1_90_TPlot.pdf
TRINITY_DN3560_c0_g1:591	si_a124	TRINITY_DN3560_c0_g1	577	600	591	-25.10	-18.70	0.745019920318725	10.5	1-12,600-589;13-19,585-579	x-x,588-586[BULt];20-21,578-577[UP3]	..(((((((...((((((((((((&))))))))))))---)))))))..	GAUGCUAUUAAAGCUAUGAAGCAA&UUGUUUUAUAGC---AAUAGUAAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN3560_c0_g1_591_TPlot.pdf
TRINITY_DN3560_c0_g1:801	si_a327	TRINITY_DN3560_c0_g1	790	809	801	-28.40	-18.90	0.665492957746479	8	1-2,809-808;4-10,807-801;13-21,798-790	3-3,x-x[BULq];11-12,800-799[SIL]	(((((((((..(((((((-((&)).)))))))..)))))))))	GGACAAGGACCAAGGAAA-CA&UGAUUUUUUUAUUCCUUGUCC	4	0.999999983799277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN3560_c0_g1_801_TPlot.pdf
TRINITY_DN3561_c0_g1:1824	si_a70	TRINITY_DN3561_c0_g1	1813	1834	1824	-23.90	-15.82	0.661924686192469	12	1-7,1834-1828;11-19,1823-1815	8-10,1827-1824[AILt];20-21,1814-1813[UP3]	..(((((((((....(((((((&)))))))-...)))))))))..	ACUGAAGGACAUGUCUGAGAGA&UCUUUCA-AAUUGUUUUUCAUU	4	0.999999999992192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3561_c0_g1_1824_TPlot.pdf
TRINITY_DN3561_c0_g1:487	si_a434	TRINITY_DN3561_c0_g1	476	496	487	-36.40	-24.00	0.659340659340659	6.5	2-8,495-489;10-17,487-480;19-21,478-476	1-1,496-496[UP5];9-9,488-488[SIL];18-18,479-479[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	AUCCCAUGUUCAUUGGAUCCA&AGGAUCCGUUGGAUAUGAGAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN3561_c0_g1_487_TPlot.pdf
TRINITY_DN3562_c0_g1:357	si_s88	TRINITY_DN3562_c0_g1	344	367	357	-34.80	-22.90	0.658045977011494	9	1-6,367-362;8-16,359-351;17-21,348-344	7-7,361-360[AILt];x-x,350-349[BULt]	(((((..(((((((((..((((((&))))))-.)))))))))--)))))	GAAGCUUGAAGAAGAGAAGGAGGA&UCCUUU-CUUCUUCUUC--GCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3562_c0_g1_357_TPlot.pdf
TRINITY_DN3565_c0_g1:2849	si_s80	TRINITY_DN3565_c0_g1	2839	2858	2849	-28.20	-19.20	0.680851063829787	5.5	1-10,2858-2849;14-21,2846-2839	11-13,2848-2847[AILq]	((((((((..-((((((((((&))))))))))...))))))))	GAAGAGGACC-GAAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3565_c0_g1_2849_TPlot.pdf
TRINITY_DN3566_c0_g1:1027	si_s84	TRINITY_DN3566_c0_g1	1016	1036	1027	-32.30	-21.20	0.656346749226006	4	1-4,1036-1033;6-13,1031-1024;15-20,1022-1017	5-5,1032-1032[SIL];14-14,1023-1023[SIL];21-21,1016-1016[UP3]	.((((((.((((((((.((((&)))).)))))))).)))))).	AGAAGAAAAAGAAAGGCAAGA&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3566_c0_g1_1027_TPlot.pdf
TRINITY_DN3566_c0_g1:1029	si_s82	TRINITY_DN3566_c0_g1	1015	1038	1029	-28.90	-20.60	0.71280276816609	5	1-6,1038-1033;8-14,1031-1025;15-21,1021-1015	7-7,1032-1032[SIL];x-x,1024-1022[BULt]	(((((((...(((((((.((((((&)))))).)))))))---)))))))	AAGAAGAAAAAGAAAGGCAAGAAA&UUUCUUUCCUUUCU---UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3566_c0_g1_1029_TPlot.pdf
TRINITY_DN3566_c0_g1:1032	si_s79	TRINITY_DN3566_c0_g1	1018	1041	1032	-26.20	-17.60	0.67175572519084	6.5	1-9,1041-1033;11-17,1031-1025;18-21,1021-1018	10-10,1032-1032[SIL];x-x,1024-1022[BULt]	((((...(((((((.(((((((((&))))))))).)))))))---))))	AAGAAAAAGAAAGGCAAGAAAGAG&UUUUUUCUUUCCUUUCU---UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3566_c0_g1_1032_TPlot.pdf
TRINITY_DN3566_c0_g1:1033	si_s78	TRINITY_DN3566_c0_g1	1022	1042	1033	-26.20	-17.40	0.66412213740458	7	2-10,1041-1033;12-19,1031-1024	1-1,1042-1042[UP5];11-11,1032-1032[SIL];20-21,1023-1022[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	AAAAGAAAGGCAAGAAAGAGC&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3566_c0_g1_1033_TPlot.pdf
TRINITY_DN3566_c0_g1:1034	si_s77	TRINITY_DN3566_c0_g1	1023	1043	1034	-25.50	-17.40	0.68235294117647	8	3-11,1041-1033;13-20,1031-1024	1-2,1043-1042[UP5];12-12,1032-1032[SIL];21-21,1023-1023[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AAAGAAAGGCAAGAAAGAGCC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3566_c0_g1_1034_TPlot.pdf
TRINITY_DN3566_c0_g1:1124	si_a410	TRINITY_DN3566_c0_g1	1113	1133	1124	-17.80	-12.10	0.679775280898876	7	1-14,1133-1120	15-21,1119-1113[UP3]	.......((((((((((((((&)))))))))))))).......	AUCUUUAAAAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999974018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3566_c0_g1_1124_TPlot.pdf
TRINITY_DN3566_c0_g1:1407	si_s78	TRINITY_DN3566_c0_g1	1398	1416	1407	-26.20	-17.40	0.66412213740458	4	1-12,1416-1405;15-21,1404-1398	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGAAGAA--GAAGGAAAAGAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3566_c0_g1_1407_TPlot.pdf
TRINITY_DN3566_c0_g1:1408	si_s82	TRINITY_DN3566_c0_g1	1397	1417	1408	-28.90	-21.00	0.726643598615917	5	2-7,1416-1411;9-20,1409-1398	1-1,1417-1417[UP5];8-8,1410-1410[SIL];21-21,1397-1397[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	UAGAAGAAGAAGGAAAAGAAC&UUUCUUUCCUUUCUUCUUCUU	2	0.999999980163895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3566_c0_g1_1408_TPlot.pdf
TRINITY_DN3566_c0_g1:1409	si_s81	TRINITY_DN3566_c0_g1	1398	1418	1409	-28.90	-21.00	0.726643598615917	6	3-8,1416-1411;10-21,1409-1398	1-2,1418-1417[UP5];9-9,1410-1410[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGAAGAAGAAGGAAAAGAACC&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999999698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3566_c0_g1_1409_TPlot.pdf
TRINITY_DN3566_c0_g1:1410	si_s80	TRINITY_DN3566_c0_g1	1399	1419	1410	-28.20	-19.90	0.705673758865248	8	4-9,1416-1411;11-21,1409-1399	1-3,1419-1417[UP5];10-10,1410-1410[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAAGAAGGAAAAGAACCU&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3566_c0_g1_1410_TPlot.pdf
TRINITY_DN3566_c0_g1:1943	si_s80	TRINITY_DN3566_c0_g1	1927	1953	1943	-28.20	-20.10	0.712765957446809	14	1-9,1953-1945;10-12,1943-1941;13-21,1935-1927	x-x,1944-1944[BULt];x-x,1940-1936[BULt]	(((((((((.....(((.(((((((((&)))))))))-)))-----)))))))))	GAAGAAGAAAAAGGGGGCAAAGAAAGA&UUUUUCUUU-CCU-----UUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3566_c0_g1_1943_TPlot.pdf
TRINITY_DN3566_c0_g1:1947	si_s77	TRINITY_DN3566_c0_g1	1930	1956	1947	-25.50	-17.70	0.694117647058824	9.5	1-12,1956-1945;13-15,1943-1941;16-21,1935-1930	x-x,1944-1944[BULt];x-x,1940-1936[BULt]	((((((.....(((.((((((((((((&))))))))))))-)))-----))))))	GAAGAAAAAGGGGGCAAAGAAAGAAGA&UUUUUUUUCUUU-CCU-----UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3566_c0_g1_1947_TPlot.pdf
TRINITY_DN3566_c0_g1:1951	si_a328	TRINITY_DN3566_c0_g1	1940	1960	1951	-30.10	-21.50	0.714285714285714	6.5	1-9,1960-1952;11-13,1950-1948;15-21,1946-1940	10-10,1951-1951[SIL];14-14,1947-1947[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	GGGGCAAAGAAAGAAGAAGUC&GAUUUUUUUAUUCCUUGUCCC	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN3566_c0_g1_1951_TPlot.pdf
TRINITY_DN3566_c0_g1:1952	si_a327	TRINITY_DN3566_c0_g1	1941	1961	1952	-28.40	-19.00	0.669014084507042	6.5	1-10,1961-1952;12-14,1950-1948;16-21,1946-1941	11-11,1951-1951[SIL];15-15,1947-1947[SIL]	((((((.(((.((((((((((&)))))))))).))).))))))	GGGCAAAGAAAGAAGAAGUCA&UGAUUUUUUUAUUCCUUGUCC	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN3566_c0_g1_1952_TPlot.pdf
TRINITY_DN3566_c0_g1:2081	si_s559	TRINITY_DN3566_c0_g1	2070	2090	2081	-27.80	-19.50	0.701438848920863	8	2-16,2089-2075	1-1,2090-2090[UP5];17-21,2074-2070[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACUACCCGAAGAUAUUAGUG&AAUUAAUAUUUUCGGGACAAG	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN3566_c0_g1_2081_TPlot.pdf
TRINITY_DN3566_c0_g1:2085	si_s555	TRINITY_DN3566_c0_g1	2074	2094	2085	-26.90	-20.00	0.743494423791822	5.5	1-4,2094-2091;6-20,2089-2075	5-5,2090-2090[SIL];21-21,2074-2074[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	ACCCGAAGAUAUUAGUGUUAU&AUAGAAUUAAUAUUUUCGGGA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN3566_c0_g1_2085_TPlot.pdf
TRINITY_DN3566_c0_g1:2086	si_s554	TRINITY_DN3566_c0_g1	2075	2095	2086	-25.90	-21.20	0.818532818532819	4.5	1-5,2095-2091;7-21,2089-2075	6-6,2090-2090[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	CCCGAAGAUAUUAGUGUUAUU&AAUAGAAUUAAUAUUUUCGGG	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN3566_c0_g1_2086_TPlot.pdf
TRINITY_DN3566_c0_g1:2811	si_s34	TRINITY_DN3566_c0_g1	2800	2820	2811	-23.30	-15.70	0.67381974248927	6	1-6,2820-2815;8-16,2813-2805;18-21,2803-2800	7-7,2814-2814[SIL];17-17,2804-2804[SIL]	((((.(((((((((.((((((&)))))).))))))))).))))	UAGUAGUUGAGGAUGUAGUUG&CAACUAAAUCUUUAAUAAUUG	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN3566_c0_g1_2811_TPlot.pdf
TRINITY_DN3566_c0_g1:2850	si_s78	TRINITY_DN3566_c0_g1	2828	2859	2850	-26.20	-18.20	0.694656488549618	13.5	1-13,2859-2847;14-21,2835-2828	x-x,2846-2836[BULt]	((((((((...........(((((((((((((&)))))))))))))-----------))))))))	GGAAGAAAUUAUUCGCGAUGGAAAGAAAAGGA&UUUUUUUCUUUCC-----------UUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3566_c0_g1_2850_TPlot.pdf
TRINITY_DN3566_c0_g1:2855	si_s73	TRINITY_DN3566_c0_g1	2844	2865	2855	-24.00	-16.00	0.666666666666667	9	1-3,2865-2863;5-18,2860-2847	4-4,2862-2861[AILt];19-21,2846-2844[UP3]	...((((((((((((((..(((&)))-.))))))))))))))...	GAUGGAAAGAAAAGGAAAAAGA&UCU-AUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3566_c0_g1_2855_TPlot.pdf
TRINITY_DN3566_c0_g1:2856	si_s72	TRINITY_DN3566_c0_g1	2845	2866	2856	-24.10	-16.20	0.672199170124481	9	2-4,2865-2863;6-19,2860-2847	1-1,2866-2866[UP5];5-5,2862-2861[AILt];20-21,2846-2845[UP3]	..((((((((((((((..(((.&.)))-.))))))))))))))..	AUGGAAAGAAAAGGAAAAAGAU&UUCU-AUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3566_c0_g1_2856_TPlot.pdf
TRINITY_DN3566_c0_g1:2857	si_s76	TRINITY_DN3566_c0_g1	2846	2866	2857	-23.60	-16.40	0.694915254237288	4.5	1-13,2866-2854;15-20,2852-2847	14-14,2853-2853[SIL];21-21,2846-2846[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UGGAAAGAAAAGGAAAAAGAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3566_c0_g1_2857_TPlot.pdf
TRINITY_DN3566_c0_g1:2899	si_s78	TRINITY_DN3566_c0_g1	2885	2908	2899	-26.20	-17.30	0.66030534351145	11.5	1-11,2908-2898;12-19,2894-2887	x-x,2897-2895[BULt];20-21,2886-2885[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	UAAAGAAGGGCAUGAAGAAGAGAA&UUUUUUUCUUU---CCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3566_c0_g1_2899_TPlot.pdf
TRINITY_DN3566_c0_g1:2900	si_s77	TRINITY_DN3566_c0_g1	2886	2909	2900	-25.50	-18.20	0.713725490196078	10.5	1-12,2909-2898;13-20,2894-2887	x-x,2897-2895[BULt];21-21,2886-2886[UP3]	.((((((((...((((((((((((&))))))))))))---)))))))).	AAAGAAGGGCAUGAAGAAGAGAAA&UUUUUUUUCUUU---CCUUUCUUC	2	0.999999999999928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3566_c0_g1_2900_TPlot.pdf
TRINITY_DN3566_c0_g1:2901	si_s76	TRINITY_DN3566_c0_g1	2887	2910	2901	-23.60	-18.20	0.771186440677966	7	2-13,2909-2898;14-21,2894-2887	1-1,2910-2910[UP5];x-x,2897-2895[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	AAGAAGGGCAUGAAGAAGAGAAAG&AUUUUUUUUCUUU---CCUUUCUU	3	0.999999999994422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3566_c0_g1_2901_TPlot.pdf
TRINITY_DN3566_c0_g1:2902	si_s75	TRINITY_DN3566_c0_g1	2888	2911	2902	-24.00	-17.30	0.720833333333333	9	3-14,2909-2898;15-21,2894-2888	1-2,2911-2910[UP5];x-x,2897-2895[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	AGAAGGGCAUGAAGAAGAGAAAGU&UAUUUUUUUUCUUU---CCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3566_c0_g1_2902_TPlot.pdf
TRINITY_DN3566_c0_g1:3317	si_s82	TRINITY_DN3566_c0_g1	3306	3326	3317	-28.90	-20.70	0.716262975778547	7	1-7,3326-3320;9-19,3318-3308	8-8,3319-3319[SIL];20-21,3307-3306[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	UUGAAGAGGAAGGUGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	2	0.999999999616312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3566_c0_g1_3317_TPlot.pdf
TRINITY_DN3566_c0_g1:3319	si_s80	TRINITY_DN3566_c0_g1	3308	3328	3319	-28.20	-20.80	0.73758865248227	7.5	2-9,3327-3320;11-21,3318-3308	1-1,3328-3328[UP5];10-10,3319-3319[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	GAAGAGGAAGGUGAAGAAGGU&UUUUUCUUUCCUUUCUUCUUC	4	0.99999999999534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3566_c0_g1_3319_TPlot.pdf
TRINITY_DN3566_c0_g1:3320	si_s807	TRINITY_DN3566_c0_g1	3308	3329	3320	-28.90	-19.50	0.674740484429066	6.5	1-7,3329-3323;9-16,3321-3314;17-20,3312-3309	8-8,3322-3322[SIL];x-x,3313-3313[BULt];21-21,3308-3308[UP3]	.((((.((((((((.(((((((&))))))).))))))))-)))).	GAAGAGGAAGGUGAAGAAGGUA&UAUCUUCGUUACCUUU-UCUUA	3	0.999999971382081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3566_c0_g1_3320_TPlot.pdf
TRINITY_DN3566_c0_g1:3321	si_s806	TRINITY_DN3566_c0_g1	3309	3330	3321	-28.60	-20.00	0.699300699300699	5.5	1-8,3330-3323;10-17,3321-3314;18-21,3312-3309	9-9,3322-3322[SIL];x-x,3313-3313[BULt]	((((.((((((((.((((((((&)))))))).))))))))-))))	AAGAGGAAGGUGAAGAAGGUAA&UUAUCUUCGUUACCUUU-UCUU	4	0.999994185394833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN3566_c0_g1_3321_TPlot.pdf
TRINITY_DN3566_c0_g1:3322	si_s805	TRINITY_DN3566_c0_g1	3310	3331	3322	-28.60	-20.00	0.699300699300699	5.5	1-9,3331-3323;11-18,3321-3314;19-21,3312-3310	10-10,3322-3322[SIL];x-x,3313-3313[BULt]	(((.((((((((.(((((((((&))))))))).))))))))-)))	AGAGGAAGGUGAAGAAGGUAAA&UUUAUCUUCGUUACCUUU-UCU	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3566_c0_g1_3322_TPlot.pdf
TRINITY_DN3566_c0_g1:3325	si_s802	TRINITY_DN3566_c0_g1	3314	3334	3325	-26.40	-18.90	0.715909090909091	8	4-12,3331-3323;14-21,3321-3314	1-3,3334-3332[UP5];13-13,3322-3322[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GAAGGUGAAGAAGGUAAAGAA&UAUUUUAUCUUCGUUACCUUU	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3566_c0_g1_3325_TPlot.pdf
TRINITY_DN3566_c0_g1:3326	si_s801	TRINITY_DN3566_c0_g1	3315	3335	3326	-28.20	-18.80	0.666666666666667	5.5	1-2,3335-3334;4-13,3332-3323;15-21,3321-3315	3-3,3333-3333[SIL];14-14,3322-3322[SIL]	(((((((.((((((((((.((&)).)))))))))).)))))))	AAGGUGAAGAAGGUAAAGAAC&GUAUUUUAUCUUCGUUACCUU	2	0.999639564237272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN3566_c0_g1_3326_TPlot.pdf
TRINITY_DN3566_c0_g1:520	si_a329	TRINITY_DN3566_c0_g1	508	534	520	-29.60	-19.80	0.668918918918919	13	1-7,534-528;8-13,522-517;14-20,515-509	x-x,527-523[BULt];x-x,516-516[BULt];21-21,508-508[UP3]	.(((((((.((((((.....(((((((&)))))))-----))))))-))))))).	AGGGACAAUGGAAUAUUAUCAAGAAAU&AUUUUUU-----UAUUCC-UUGUCCCG	2	0.999921044563856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3566_c0_g1_520_TPlot.pdf
TRINITY_DN3566_c0_g1:521	si_a328	TRINITY_DN3566_c0_g1	509	535	521	-30.10	-19.70	0.654485049833887	13	2-8,534-528;9-14,522-517;15-21,515-509	1-1,535-535[UP5];x-x,527-523[BULt];x-x,516-516[BULt]	(((((((.((((((.....(((((((.&.)))))))-----))))))-)))))))	GGGACAAUGGAAUAUUAUCAAGAAAUA&GAUUUUUU-----UAUUCC-UUGUCCC	2	0.999986682428738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN3566_c0_g1_521_TPlot.pdf
TRINITY_DN3566_c0_g1:54	si_a784	TRINITY_DN3566_c0_g1	44	61	54	-24.70	-16.20	0.65587044534413	8	2-8,60-54;12-21,53-44	1-1,61-61[UP5];9-11,x-x[BULq]	((((((((((---(((((((.&.)))))))...))))))))))	AAGAUGGAAA---AGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3566_c0_g1_54_TPlot.pdf
TRINITY_DN3566_c0_g1:557	si_a764	TRINITY_DN3566_c0_g1	545	566	557	-28.90	-19.70	0.681660899653979	6.5	1-10,566-557;11-15,555-551;17-19,549-547	x-x,556-556[BULt];16-16,550-550[SIL];20-21,546-545[UP3]	..(((.(((((.((((((((((&))))))))))-))))).)))..	CGGAAACGAUCAAGAAACCCAA&UUGGGUUUUU-GAUUGAUUCAA	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN3566_c0_g1_557_TPlot.pdf
TRINITY_DN3566_c0_g1:558	si_a763	TRINITY_DN3566_c0_g1	546	567	558	-28.80	-20.60	0.715277777777778	5.5	1-11,567-557;12-16,555-551;18-20,549-547	x-x,556-556[BULt];17-17,550-550[SIL];21-21,546-546[UP3]	.(((.(((((.(((((((((((&)))))))))))-))))).))).	GGAAACGAUCAAGAAACCCAAA&UUUGGGUUUUU-GAUUGAUUCA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3566_c0_g1_558_TPlot.pdf
TRINITY_DN3566_c0_g1:745	si_s78	TRINITY_DN3566_c0_g1	734	754	745	-26.20	-17.70	0.675572519083969	13	7-19,748-736	1-6,754-749[UP5];20-21,735-734[UP3]	..(((((((((((((......&......)))))))))))))..	UAAAGAAAGGAAAGAUACCAG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3566_c0_g1_745_TPlot.pdf
TRINITY_DN3566_c0_g1:746	si_s77	TRINITY_DN3566_c0_g1	735	755	746	-25.50	-17.70	0.694117647058824	14	8-20,748-736	1-7,755-749[UP5];21-21,735-735[UP3]	.(((((((((((((.......&.......))))))))))))).	AAAGAAAGGAAAGAUACCAGA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3566_c0_g1_746_TPlot.pdf
TRINITY_DN3566_c0_g1:748	si_s75	TRINITY_DN3566_c0_g1	737	759	748	-24.00	-17.98	0.749166666666667	9.5	1-7,759-753;10-21,748-737	8-9,752-749[AILt]	((((((((((((....(((((((&)))))))--..))))))))))))	AGAAAGGAAAGAUACCAGAAAUG&UAUUUUU--UUUCUUUCCUUUCU	3	0.999999999981952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3566_c0_g1_748_TPlot.pdf
TRINITY_DN3566_c0_g1:749	si_s74	TRINITY_DN3566_c0_g1	738	760	749	-25.00	-17.38	0.6952	11	2-8,759-753;11-21,748-738	1-1,760-760[UP5];9-10,752-749[AILt]	(((((((((((....(((((((.&.)))))))--..)))))))))))	GAAAGGAAAGAUACCAGAAAUGA&CUAUUUUU--UUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3566_c0_g1_749_TPlot.pdf
TRINITY_DN3569_c0_g1:3716	si_a81	TRINITY_DN3569_c0_g1	3705	3725	3716	-23.00	-16.30	0.708695652173913	8.5	1-3,3725-3723;5-17,3721-3709	4-4,3722-3722[SIL];18-21,3708-3705[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AAUCUCUUGAUGAUGAGCAAC&GUUUUUCAUUAUUAAGAAAAG	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN3569_c0_g1_3716_TPlot.pdf
TRINITY_DN3569_c0_g1:3717	si_a80	TRINITY_DN3569_c0_g1	3706	3726	3717	-22.10	-16.40	0.742081447963801	8.5	2-4,3725-3723;6-18,3721-3709	1-1,3726-3726[UP5];5-5,3722-3722[SIL];19-21,3708-3706[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	AUCUCUUGAUGAUGAGCAACG&UGUUUUUCAUUAUUAAGAAAA	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3569_c0_g1_3717_TPlot.pdf
TRINITY_DN3569_c0_g1:3719	si_a78	TRINITY_DN3569_c0_g1	3708	3728	3719	-22.30	-18.20	0.816143497757847	7	1-6,3728-3723;8-20,3721-3709	7-7,3722-3722[SIL];21-21,3708-3708[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	CUCUUGAUGAUGAGCAACGGU&AUUGUUUUUCAUUAUUAAGAA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN3569_c0_g1_3719_TPlot.pdf
TRINITY_DN3569_c0_g1:3720	si_a77	TRINITY_DN3569_c0_g1	3709	3729	3720	-22.20	-19.10	0.86036036036036	6	1-7,3729-3723;9-21,3721-3709	8-8,3722-3722[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	UCUUGAUGAUGAGCAACGGUU&AAUUGUUUUUCAUUAUUAAGA	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3569_c0_g1_3720_TPlot.pdf
TRINITY_DN3569_c0_g1:3721	si_a76	TRINITY_DN3569_c0_g1	3710	3730	3721	-21.20	-17.20	0.811320754716981	7	2-8,3729-3723;10-21,3721-3710	1-1,3730-3730[UP5];9-9,3722-3722[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	CUUGAUGAUGAGCAACGGUUA&AAAUUGUUUUUCAUUAUUAAG	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3569_c0_g1_3721_TPlot.pdf
TRINITY_DN3569_c0_g1:3722	si_a75	TRINITY_DN3569_c0_g1	3711	3731	3722	-21.30	-14.80	0.694835680751174	9	3-9,3729-3723;11-21,3721-3711	1-2,3731-3730[UP5];10-10,3722-3722[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	UUGAUGAUGAGCAACGGUUAU&CAAAUUGUUUUUCAUUAUUAA	4	0.9999993743736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN3569_c0_g1_3722_TPlot.pdf
TRINITY_DN3569_c0_g1:3724	si_a451	TRINITY_DN3569_c0_g1	3713	3733	3724	-23.60	-16.20	0.686440677966102	9.5	1-14,3733-3720	15-21,3719-3713[UP3]	.......((((((((((((((&)))))))))))))).......	GAUGAUGAGCAACGGUUAUCU&AGAUAAUUGUUGUUAUAUAUA	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN3569_c0_g1_3724_TPlot.pdf
TRINITY_DN3569_c0_g1:3725	si_a450	TRINITY_DN3569_c0_g1	3714	3734	3725	-25.20	-16.60	0.658730158730159	9.5	2-15,3733-3720	1-1,3734-3734[UP5];16-21,3719-3714[UP3]	......((((((((((((((.&.))))))))))))))......	AUGAUGAGCAACGGUUAUCUG&GAGAUAAUUGUUGUUAUAUAU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN3569_c0_g1_3725_TPlot.pdf
TRINITY_DN3569_c0_g1:3726	si_a449	TRINITY_DN3569_c0_g1	3715	3735	3726	-25.70	-16.90	0.657587548638132	9.5	1-1,3735-3735;3-16,3733-3720	2-2,3734-3734[SIL];17-21,3719-3715[UP3]	.....((((((((((((((.(&).)))))))))))))).....	UGAUGAGCAACGGUUAUCUGA&UGAGAUAAUUGUUGUUAUAUA	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN3569_c0_g1_3726_TPlot.pdf
TRINITY_DN3569_c0_g1:3727	si_a448	TRINITY_DN3569_c0_g1	3716	3736	3727	-25.50	-16.90	0.662745098039216	9.5	2-2,3735-3735;4-17,3733-3720	1-1,3736-3736[UP5];3-3,3734-3734[SIL];18-21,3719-3716[UP3]	....((((((((((((((.(.&.).))))))))))))))....	GAUGAGCAACGGUUAUCUGAA&AUGAGAUAAUUGUUGUUAUAU	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN3569_c0_g1_3727_TPlot.pdf
TRINITY_DN3569_c0_g1:3728	si_a447	TRINITY_DN3569_c0_g1	3717	3737	3728	-25.70	-16.90	0.657587548638132	10.5	3-3,3735-3735;5-18,3733-3720	1-2,3737-3736[UP5];4-4,3734-3734[SIL];19-21,3719-3717[UP3]	...((((((((((((((.(..&..).))))))))))))))...	AUGAGCAACGGUUAUCUGAAA&UAUGAGAUAAUUGUUGUUAUA	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN3569_c0_g1_3728_TPlot.pdf
TRINITY_DN3569_c0_g1:3729	si_a446	TRINITY_DN3569_c0_g1	3718	3738	3729	-25.50	-16.90	0.662745098039216	11	4-4,3735-3735;6-19,3733-3720	1-3,3738-3736[UP5];5-5,3734-3734[SIL];20-21,3719-3718[UP3]	..((((((((((((((.(...&...).))))))))))))))..	UGAGCAACGGUUAUCUGAAAC&AUAUGAGAUAAUUGUUGUUAU	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN3569_c0_g1_3729_TPlot.pdf
TRINITY_DN3569_c0_g1:3757	si_a601	TRINITY_DN3569_c0_g1	3746	3766	3757	-30.00	-20.70	0.69	6	1-1,3766-3766;3-13,3764-3754;15-19,3752-3748	2-2,3765-3765[SIL];14-14,3753-3753[SIL];20-21,3747-3746[UP3]	..(((((.(((((((((((.(&).))))))))))).)))))..	CUUUGGAUUUGCGAAGAUUGU&AGAAUUUUCGCAAUUCCAAUC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN3569_c0_g1_3757_TPlot.pdf
TRINITY_DN3569_c0_g1:3759	si_a599	TRINITY_DN3569_c0_g1	3748	3768	3759	-30.40	-24.00	0.789473684210526	5	2-3,3767-3766;5-15,3764-3754;17-21,3752-3748	1-1,3768-3768[UP5];4-4,3765-3765[SIL];16-16,3753-3753[SIL]	(((((.(((((((((((.((.&.)).))))))))))).)))))	UUGGAUUUGCGAAGAUUGUGG&ACAGAAUUUUCGCAAUUCCAA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN3569_c0_g1_3759_TPlot.pdf
TRINITY_DN3569_c0_g1:3760	si_a598	TRINITY_DN3569_c0_g1	3749	3769	3760	-32.30	-23.10	0.715170278637771	7	3-4,3767-3766;6-16,3764-3754;18-21,3752-3749	1-2,3769-3768[UP5];5-5,3765-3765[SIL];17-17,3753-3753[SIL]	((((.(((((((((((.((..&..)).))))))))))).))))	UGGAUUUGCGAAGAUUGUGGA&GACAGAAUUUUCGCAAUUCCA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN3569_c0_g1_3760_TPlot.pdf
TRINITY_DN3569_c0_g1:3856	si_s691	TRINITY_DN3569_c0_g1	3845	3864	3856	-26.20	-18.50	0.706106870229008	10.5	1-7,3864-3858;9-17,3857-3849	8-8,x-x[BULq];18-21,3848-3845[UP3]	....(((((((((-(((((((&))))))).)))))))))....	AGCCGUCGACUGG-UGGACUC&GAGUUUAAUUAGUCGAUUUAU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN3569_c0_g1_3856_TPlot.pdf
TRINITY_DN3569_c0_g1:444	si_a635	TRINITY_DN3569_c0_g1	429	453	444	-26.10	-17.40	0.666666666666667	11	2-13,452-441;14-18,436-432	1-1,453-453[UP5];x-x,440-437[BULt];19-21,431-429[UP3]	...(((((....((((((((((((.&.))))))))))))----)))))...	UGGACUCAGCCCAAGAAGUCGGCAC&AUGUCGAUUUUUU----UGAGUAAU	4	0.999999999892583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN3569_c0_g1_444_TPlot.pdf
TRINITY_DN3569_c0_g1:447	si_a632	TRINITY_DN3569_c0_g1	432	456	447	-26.10	-17.00	0.651340996168582	13.5	5-16,452-441;17-21,436-432	1-4,456-453[UP5];x-x,440-437[BULt]	(((((....((((((((((((....&....))))))))))))----)))))	ACUCAGCCCAAGAAGUCGGCACUUG&AUUAUGUCGAUUUUUU----UGAGU	3	0.999999999963345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN3569_c0_g1_447_TPlot.pdf
TRINITY_DN3569_c0_g1:5179	si_s385	TRINITY_DN3569_c0_g1	5167	5188	5179	-38.60	-25.30	0.655440414507772	9.5	3-11,5186-5178;12-18,5176-5170	1-2,5188-5187[UP5];x-x,5177-5177[BULt];19-21,5169-5167[UP3]	...(((((((.(((((((((..&..)))))))))-)))))))...	CCCGGGAUGUCAAGGUGGACCU&GUGUCCGCCUU-ACAUUCCAAG	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s385_TRINITY_DN3569_c0_g1_5179_TPlot.pdf
TRINITY_DN3569_c0_g1:5623	si_s85	TRINITY_DN3569_c0_g1	5612	5632	5623	-33.80	-22.10	0.653846153846154	13	5-9,5628-5624;12-21,5621-5612	1-4,5632-5629[UP5];10-11,5623-5622[SIL]	((((((((((..(((((....&....)))))..))))))))))	GCGAAGAAGAUCGAGGGCAAU&CUUUCCUUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3569_c0_g1_5623_TPlot.pdf
TRINITY_DN3569_c0_g1:782	si_a80	TRINITY_DN3569_c0_g1	770	791	782	-22.10	-14.80	0.669683257918552	9.5	2-11,790-781;12-17,779-774	1-1,791-791[UP5];x-x,780-780[BULt];18-21,773-770[UP3]	....((((((.((((((((((.&.))))))))))-))))))....	CGAACUUGAUCAAUGAAGAGCG&UGUUUUUCAUU-AUUAAGAAAA	3	0.999994244422608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3569_c0_g1_782_TPlot.pdf
TRINITY_DN3569_c0_g1:783	si_a79	TRINITY_DN3569_c0_g1	771	792	783	-22.20	-16.30	0.734234234234234	8.5	1-12,792-781;13-18,779-774	x-x,780-780[BULt];19-21,773-771[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	GAACUUGAUCAAUGAAGAGCGA&UUGUUUUUCAUU-AUUAAGAAA	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN3569_c0_g1_783_TPlot.pdf
TRINITY_DN3569_c0_g1:784	si_a78	TRINITY_DN3569_c0_g1	772	793	784	-22.30	-16.30	0.730941704035874	7.5	2-13,792-781;14-19,779-774	1-1,793-793[UP5];x-x,780-780[BULt];20-21,773-772[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	AACUUGAUCAAUGAAGAGCGAG&AUUGUUUUUCAUU-AUUAAGAA	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN3569_c0_g1_784_TPlot.pdf
TRINITY_DN3569_c0_g1:785	si_a77	TRINITY_DN3569_c0_g1	773	794	785	-22.20	-16.30	0.734234234234234	8.5	3-14,792-781;15-20,779-774	1-2,794-793[UP5];x-x,780-780[BULt];21-21,773-773[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	ACUUGAUCAAUGAAGAGCGAGU&AAUUGUUUUUCAUU-AUUAAGA	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3569_c0_g1_785_TPlot.pdf
TRINITY_DN356_c0_g1:1041	si_s69	TRINITY_DN356_c0_g1	1030	1049	1041	-23.40	-15.40	0.658119658119658	7	2-7,1048-1043;9-20,1042-1031	1-1,1049-1049[UP5];8-8,x-x[BULq];21-21,1030-1030[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	CAAGGAGAAAAGG-AGAAGUA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN356_c0_g1_1041_TPlot.pdf
TRINITY_DN356_c0_g1:1042	si_s68	TRINITY_DN356_c0_g1	1031	1050	1042	-23.10	-15.40	0.666666666666667	8	3-8,1048-1043;10-21,1042-1031	1-2,1050-1049[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	AAGGAGAAAAGG-AGAAGUAC&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN356_c0_g1_1042_TPlot.pdf
TRINITY_DN356_c0_g1:1245	si_s701	TRINITY_DN356_c0_g1	1232	1254	1245	-30.50	-20.80	0.681967213114754	10	1-4,1254-1251;6-12,1249-1243;13-20,1240-1233	5-5,1250-1250[SIL];x-x,1242-1241[BULt];21-21,1232-1232[UP3]	.((((((((..(((((((.((((&)))).)))))))--)))))))).	AUGUUCACUUAGAUGGAUGGACU&AGUCGAUUUAUU--AGUGAACAG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN356_c0_g1_1245_TPlot.pdf
TRINITY_DN356_c0_g1:1246	si_s700	TRINITY_DN356_c0_g1	1233	1255	1246	-29.20	-20.60	0.705479452054795	7.5	2-5,1254-1251;7-13,1249-1243;14-21,1240-1233	1-1,1255-1255[UP5];6-6,1250-1250[SIL];x-x,1242-1241[BULt]	((((((((..(((((((.((((.&.)))).)))))))--))))))))	UGUUCACUUAGAUGGAUGGACUC&UAGUCGAUUUAUU--AGUGAACA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN356_c0_g1_1246_TPlot.pdf
TRINITY_DN356_c0_g1:1247	si_s699	TRINITY_DN356_c0_g1	1234	1256	1247	-28.60	-19.20	0.671328671328671	9.5	3-6,1254-1251;8-14,1249-1243;15-21,1240-1234	1-2,1256-1255[UP5];7-7,1250-1250[SIL];x-x,1242-1241[BULt]	(((((((..(((((((.((((..&..)))).)))))))--)))))))	GUUCACUUAGAUGGAUGGACUCU&UUAGUCGAUUUAUU--AGUGAAC	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN356_c0_g1_1247_TPlot.pdf
TRINITY_DN356_c0_g1:1376	si_s320	TRINITY_DN356_c0_g1	1365	1385	1376	-31.00	-20.50	0.661290322580645	9.5	1-8,1385-1378;11-15,1375-1371;18-20,1368-1366	9-10,1377-1376[SIL];16-17,1370-1369[SIL];21-21,1365-1365[UP3]	.(((..(((((..((((((((&))))))))..)))))..))).	CGUGGUUGUAAAUGGAGGGAC&GUCCUUCUUGUUACAAACAUA	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN356_c0_g1_1376_TPlot.pdf
TRINITY_DN356_c0_g1:1572	si_s306	TRINITY_DN356_c0_g1	1550	1581	1572	-32.30	-21.10	0.653250773993808	13.5	1-10,1581-1572;12-15,1570-1567;16-21,1555-1550	11-11,1571-1571[SIL];x-x,1566-1556[BULt]	((((((...........((((.((((((((((&)))))))))).))))-----------))))))	GGAGGAGUUACAAAACCCAGAUUUUUCGCAAU&AUUGCGAAAAUUCUG-----------UCCUUC	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN356_c0_g1_1572_TPlot.pdf
TRINITY_DN356_c0_g1:179	si_a475	TRINITY_DN356_c0_g1	168	188	179	-23.50	-15.70	0.668085106382979	6	1-3,188-186;5-20,184-169	4-4,185-185[SIL];21-21,168-168[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	CUUUGUAUAAUAAUAGUCACA&UGUAAUUAUUGUUAUAUAGAA	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN356_c0_g1_179_TPlot.pdf
TRINITY_DN356_c0_g1:300	si_s211	TRINITY_DN356_c0_g1	286	309	300	-38.00	-25.90	0.681578947368421	9	1-11,309-299;12-16,295-291;18-19,290-289;20-21,287-286	x-x,298-296[BULt];17-17,x-x[BULq];x-x,288-288[BULt]	((.((-(((((...(((((((((((&)))))))))))---))))).))-))	GCAGG-UUCGAAUUACACAGCUGGU&ACCAGUUGUGU---UCGAAACC-GC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s211_TRINITY_DN356_c0_g1_300_TPlot.pdf
TRINITY_DN356_c0_g1:301	si_s210	TRINITY_DN356_c0_g1	288	310	301	-35.90	-24.30	0.676880222841226	10	2-12,309-299;13-17,295-291;19-20,290-289	1-1,310-310[UP5];x-x,298-296[BULt];18-18,x-x[BULq];21-21,288-288[UP3]	.((-(((((...(((((((((((.&.)))))))))))---))))).)).	AGG-UUCGAAUUACACAGCUGGUU&UACCAGUUGUGU---UCGAAACCG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN356_c0_g1_301_TPlot.pdf
TRINITY_DN3571_c0_g1:1073	si_s890	TRINITY_DN3571_c0_g1	1062	1082	1073	-29.50	-19.40	0.657627118644068	16.5	9-21,1074-1062	1-8,1082-1075[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGGAAGCUGCUGGACA&AAUAAAUAGGCUUUCUCUUCA	3	0.999985394663513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN3571_c0_g1_1073_TPlot.pdf
TRINITY_DN3572_c0_g1:1397	si_s76	TRINITY_DN3572_c0_g1	1385	1406	1397	-23.60	-15.90	0.673728813559322	9.5	1-12,1406-1395;13-18,1393-1388	x-x,1394-1394[BULt];19-21,1387-1385[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UAAAGAGGAUGAGAAGAAGGAU&AUUUUUUUUCUU-UCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3572_c0_g1_1397_TPlot.pdf
TRINITY_DN3572_c0_g1:1400	si_s73	TRINITY_DN3572_c0_g1	1388	1409	1400	-24.00	-17.10	0.7125	9	3-15,1407-1395;16-21,1393-1388	1-2,1409-1408[UP5];x-x,1394-1394[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAGGAUGAGAAGAAGGAUGAU&UCUAUUUUUUUUCUU-UCCUUU	2	0.999999999630374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3572_c0_g1_1400_TPlot.pdf
TRINITY_DN3572_c0_g1:1401	si_s72	TRINITY_DN3572_c0_g1	1389	1410	1401	-24.10	-16.30	0.676348547717842	11	4-16,1407-1395;17-21,1393-1389	1-3,1410-1408[UP5];x-x,1394-1394[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAGGAUGAGAAGAAGGAUGAUG&UUCUAUUUUUUUUCUU-UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3572_c0_g1_1401_TPlot.pdf
TRINITY_DN3572_c0_g1:1519	si_a410	TRINITY_DN3572_c0_g1	1508	1528	1519	-17.80	-12.60	0.707865168539326	5.5	2-5,1527-1524;7-19,1522-1510	1-1,1528-1528[UP5];6-6,1523-1523[SIL];20-21,1509-1508[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AAUGUUUAAAUAUAAUCAAAU&UUUUGUUUAUAUUUAAAUAAA	3	0.999998487030107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3572_c0_g1_1519_TPlot.pdf
TRINITY_DN35747_c0_g1:187	si_a783	TRINITY_DN35747_c0_g1	176	196	187	-24.70	-17.00	0.688259109311741	10	4-17,193-180	1-3,196-194[UP5];18-21,179-176[UP3]	....((((((((((((((...&...))))))))))))))....	UUGAAGAAAAAUGGAAGAAGA&AACUCUUCUAUUUUUCUAUUU	3	0.99999999986609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN35747_c0_g1_187_TPlot.pdf
TRINITY_DN3574_c0_g1:1267	si_s803	TRINITY_DN3574_c0_g1	1256	1276	1267	-26.00	-17.90	0.688461538461538	8.5	2-9,1275-1268;11-17,1266-1260	1-1,1276-1276[UP5];10-10,1267-1267[SIL];18-21,1259-1256[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	ACCCGGUGACGUAGAUAAAGC&AUUUUAUCUUCGUUACCUUUU	4	0.999999977459052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3574_c0_g1_1267_TPlot.pdf
TRINITY_DN3574_c0_g1:950	si_s795	TRINITY_DN3574_c0_g1	939	959	950	-30.30	-19.90	0.656765676567657	9	5-16,955-944;18-21,942-939	1-4,959-956[UP5];17-17,943-943[SIL]	((((.((((((((((((....&....)))))))))))).))))	GCGAUGAUGAAAUACGAAAAU&AAGCUCGUAUUUUAUCUUCGU	4	0.999996457062207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN3574_c0_g1_950_TPlot.pdf
TRINITY_DN35750_c0_g1:172	si_a350	TRINITY_DN35750_c0_g1	161	181	172	-20.30	-15.60	0.768472906403941	10	4-19,178-163	1-3,181-179[UP5];20-21,162-161[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUGAGAUAGAAUUGAUGUGGU&AAAAUAUUAAUUCUAUUUUGA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN35750_c0_g1_172_TPlot.pdf
TRINITY_DN35750_c0_g1:173	si_a349	TRINITY_DN35750_c0_g1	162	182	173	-21.30	-17.60	0.826291079812207	8	1-2,182-181;5-20,178-163	3-4,180-179[SIL];21-21,162-162[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	UGAGAUAGAAUUGAUGUGGUC&GAAAAUAUUAAUUCUAUUUUG	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN35750_c0_g1_173_TPlot.pdf
TRINITY_DN3577_c0_g1:1037	si_s45	TRINITY_DN3577_c0_g1	1025	1046	1037	-24.70	-16.10	0.651821862348178	11	5-14,1042-1033;15-20,1031-1026	1-4,1046-1043[UP5];x-x,1032-1032[BULt];21-21,1025-1025[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	CACUUGGCAGUCCAAUUGCGGA&UUAAUAAUUGGAUU-UCAAGUU	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN3577_c0_g1_1037_TPlot.pdf
TRINITY_DN3577_c0_g1:1207	si_a404	TRINITY_DN3577_c0_g1	1196	1216	1207	-21.70	-14.30	0.658986175115207	10	1-12,1216-1205;14-15,1203-1202	13-13,1204-1204[SIL];16-21,1201-1196[UP3]	......((.((((((((((((&)))))))))))).))......	GAGAACUAUGCAGAGCAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3577_c0_g1_1207_TPlot.pdf
TRINITY_DN3577_c0_g1:1386	si_s899	TRINITY_DN3577_c0_g1	1375	1395	1386	-28.30	-19.40	0.685512367491166	10.5	1-11,1395-1385;14-17,1382-1379	12-13,1384-1383[SIL];18-21,1378-1375[UP3]	....((((..(((((((((((&)))))))))))..))))....	CAUGGAGACCGAGGAGGAGGC&GCUUUCUCUUCAAUUUCAAUU	4	0.999994967703848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3577_c0_g1_1386_TPlot.pdf
TRINITY_DN3577_c0_g1:1857	si_s797	TRINITY_DN3577_c0_g1	1846	1867	1857	-30.00	-19.70	0.656666666666667	10.5	1-3,1867-1865;4-5,1863-1862;8-19,1859-1848	x-x,1864-1864[BULt];6-7,1861-1860[SIL];20-21,1847-1846[UP3]	..((((((((((((..((.(((&)))-))..))))))))))))..	ACGCGAAGAUGGAAAUCGAAGC&GCU-CGUAUUUUAUCUUCGUUA	4	0.999999995765342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3577_c0_g1_1857_TPlot.pdf
TRINITY_DN3577_c0_g1:1858	si_s796	TRINITY_DN3577_c0_g1	1847	1868	1858	-30.30	-19.80	0.653465346534653	10.5	2-4,1867-1865;5-6,1863-1862;9-20,1859-1848	1-1,1868-1868[UP5];x-x,1864-1864[BULt];7-8,1861-1860[SIL];21-21,1847-1847[UP3]	.((((((((((((..((.(((.&.)))-))..)))))))))))).	CGCGAAGAUGGAAAUCGAAGCA&AGCU-CGUAUUUUAUCUUCGUU	4	0.999999965227629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3577_c0_g1_1858_TPlot.pdf
TRINITY_DN3577_c0_g1:1909	si_a410	TRINITY_DN3577_c0_g1	1898	1918	1909	-17.80	-12.10	0.679775280898876	5.5	1-6,1918-1913;8-17,1911-1902;19-21,1900-1898	7-7,1912-1912[SIL];18-18,1901-1901[SIL]	(((.((((((((((.((((((&)))))).)))))))))).)))	UUUUUUUGAAUAUAUGCAGAA&UUUUGUUUAUAUUUAAAUAAA	2	0.99999964397168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3577_c0_g1_1909_TPlot.pdf
TRINITY_DN3577_c0_g1:1913	si_a406	TRINITY_DN3577_c0_g1	1902	1922	1913	-19.80	-14.40	0.727272727272727	7.5	2-10,1921-1913;12-21,1911-1902	1-1,1922-1922[UP5];11-11,1912-1912[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	UUUGAAUAUAUGCAGAAUGAG&AUUGUUUUGUUUAUAUUUAAA	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3577_c0_g1_1913_TPlot.pdf
TRINITY_DN3577_c0_g1:1918	si_s485	TRINITY_DN3577_c0_g1	1906	1927	1918	-18.10	-12.30	0.679558011049724	11	1-12,1927-1916;15-19,1912-1908	13-14,1915-1913[AILt];20-21,1907-1906[UP3]	..(((((...((((((((((((&))))))))))))-..)))))..	AAUAUAUGCAGAAUGAGUGUGG&CUAUAUUUAUUU-AAAUAUAAA	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN3577_c0_g1_1918_TPlot.pdf
TRINITY_DN3577_c0_g1:4099	si_s666	TRINITY_DN3577_c0_g1	4088	4108	4099	-31.30	-20.90	0.667731629392971	10	2-7,4107-4102;10-11,4099-4098;13-20,4096-4089	1-1,4108-4108[UP5];8-9,4101-4100[SIL];12-12,4097-4097[SIL];21-21,4088-4088[UP3]	.((((((((.((..((((((.&.))))))..)).)))))))).	AUCUGUGAUGGAGCCGAUCCA&GGGAUCGAAUUGAUUAUAGAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN3577_c0_g1_4099_TPlot.pdf
TRINITY_DN3577_c0_g1:4134	si_a323	TRINITY_DN3577_c0_g1	4123	4144	4134	-26.80	-18.20	0.67910447761194	9	1-6,4144-4139;7-14,4137-4130;16-19,4128-4125	x-x,4138-4138[BULt];15-15,4129-4129[SIL];20-21,4124-4123[UP3]	..((((.((((((((.((((((&))))))-)))))))).))))..	ACGGAGGGAGGAAGUCCAUGGA&UCCAUG-AUUUUUUUAUUCCUU	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3577_c0_g1_4134_TPlot.pdf
TRINITY_DN3577_c0_g1:4135	si_a322	TRINITY_DN3577_c0_g1	4124	4145	4135	-27.00	-18.20	0.674074074074074	8.5	2-7,4144-4139;8-15,4137-4130;17-20,4128-4125	1-1,4145-4145[UP5];x-x,4138-4138[BULt];16-16,4129-4129[SIL];21-21,4124-4124[UP3]	.((((.((((((((.((((((.&.))))))-)))))))).)))).	CGGAGGGAGGAAGUCCAUGGAG&AUCCAUG-AUUUUUUUAUUCCU	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN3577_c0_g1_4135_TPlot.pdf
TRINITY_DN3577_c0_g1:4136	si_a321	TRINITY_DN3577_c0_g1	4125	4146	4136	-26.70	-17.90	0.670411985018727	9	3-8,4144-4139;9-16,4137-4130;18-21,4128-4125	1-2,4146-4145[UP5];x-x,4138-4138[BULt];17-17,4129-4129[SIL]	((((.((((((((.((((((..&..))))))-)))))))).))))	GGAGGGAGGAAGUCCAUGGAGU&UAUCCAUG-AUUUUUUUAUUCC	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3577_c0_g1_4136_TPlot.pdf
TRINITY_DN3577_c0_g1:5476	si_s899	TRINITY_DN3577_c0_g1	5464	5485	5476	-28.30	-19.80	0.699646643109541	11.5	1-11,5485-5475;14-18,5471-5467	12-13,5474-5472[AILt];19-21,5466-5464[UP3]	...(((((...(((((((((((&)))))))))))-..)))))...	CAGUGAAGGCGGAAGGGGAGGC&GCUUUCUCUUC-AAUUUCAAUU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3577_c0_g1_5476_TPlot.pdf
TRINITY_DN3577_c0_g1:5477	si_s82	TRINITY_DN3577_c0_g1	5466	5486	5477	-28.90	-19.20	0.664359861591695	10.5	3-13,5484-5474;15-19,5472-5468	1-2,5486-5485[UP5];14-14,5473-5473[SIL];20-21,5467-5466[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	GUGAAGGCGGAAGGGGAGGCA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3577_c0_g1_5477_TPlot.pdf
TRINITY_DN3579_c0_g1:4793	si_a466	TRINITY_DN3579_c0_g1	4782	4802	4793	-21.50	-14.50	0.674418604651163	6.5	3-17,4800-4786;19-21,4784-4782	1-2,4802-4801[UP5];18-18,4785-4785[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	AUAUUAAUUACAUAUUGUGAU&UAUAUAAUAUGUAAUUAUUGU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN3579_c0_g1_4793_TPlot.pdf
TRINITY_DN3580_c0_g1:3506	si_s444	TRINITY_DN3580_c0_g1	3495	3515	3506	-22.80	-15.20	0.666666666666667	8	1-4,3515-3512;6-16,3510-3500;18-19,3498-3497	5-5,3511-3511[SIL];17-17,3499-3499[SIL];20-21,3496-3495[UP3]	..((.(((((((((((.((((&)))).))))))))))).))..	UGUGCUGUUGUAUGUAUUGUG&CAUAUUAUAUAUAACAACAAU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN3580_c0_g1_3506_TPlot.pdf
TRINITY_DN3581_c0_g1:993	si_s693	TRINITY_DN3581_c0_g1	982	1002	993	-23.90	-17.30	0.723849372384937	8.5	1-4,1002-999;7-19,996-984	5-6,998-997[SIL];20-21,983-982[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	AUAUGAAUCGAUUAAGAGAAC&GUUUAAUUAGUCGAUUUAUUA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN3581_c0_g1_993_TPlot.pdf
TRINITY_DN3581_c0_g1:994	si_s692	TRINITY_DN3581_c0_g1	983	1003	994	-24.20	-17.40	0.71900826446281	8.5	2-5,1002-999;8-20,996-984	1-1,1003-1003[UP5];6-7,998-997[SIL];21-21,983-983[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	UAUGAAUCGAUUAAGAGAACA&AGUUUAAUUAGUCGAUUUAUU	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN3581_c0_g1_994_TPlot.pdf
TRINITY_DN35825_c0_g1:43	si_a889	TRINITY_DN35825_c0_g1	32	52	43	-23.60	-15.40	0.652542372881356	8.5	2-16,51-37	1-1,52-52[UP5];17-21,36-32[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAAACUUGUUGCUAUAUUGGG&AUCAAUAUAGUAAUAAUAAGU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN35825_c0_g1_43_TPlot.pdf
TRINITY_DN3583_c0_g1:796	si_a221	TRINITY_DN3583_c0_g1	785	806	796	-25.20	-16.60	0.658730158730159	10	3-7,804-800;8-17,798-789	1-2,806-805[UP5];x-x,799-799[BULt];18-21,788-785[UP3]	....((((((((((.(((((..&..)))))-))))))))))....	UUUAGGAGACAUGAUGUUUAUG&AUUAAAC-UCAUGUUUCUAUAA	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN3583_c0_g1_796_TPlot.pdf
TRINITY_DN35849_c0_g1:124	si_a143	TRINITY_DN35849_c0_g1	113	134	124	-25.10	-16.40	0.653386454183267	14	5-7,130-128;9-21,125-113	1-4,134-131[UP5];8-8,127-126[AILt]	(((((((((((((..(((....&....)))-.)))))))))))))	CUUGAAGCAGCAGAGGAUGCAA&AUUAAUC-GUUGUUGUUUUAAG	3	0.999999992477201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN35849_c0_g1_124_TPlot.pdf
TRINITY_DN3584_c0_g1:617	si_a464	TRINITY_DN3584_c0_g1	606	626	617	-19.60	-12.90	0.658163265306122	13.5	5-18,622-609	1-4,626-623[UP5];19-21,608-606[UP3]	...((((((((((((((....&....))))))))))))))...	AAAGAUUACAUGUUGUGAAGU&UAUAUAUAAUAUGUAAUUAUU	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN3584_c0_g1_617_TPlot.pdf
TRINITY_DN3584_c0_g1:631	si_a74	TRINITY_DN3584_c0_g1	620	641	631	-22.20	-14.60	0.657657657657658	9	1-5,641-637;6-17,635-624	x-x,636-636[BULt];18-21,623-620[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	GUGAAGUGGAGGACAAUUUUGA&UCAAA-UUGUUUUUCAUUAUUA	3	0.999999999974018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN3584_c0_g1_631_TPlot.pdf
TRINITY_DN3584_c0_g1:632	si_a73	TRINITY_DN3584_c0_g1	621	642	632	-21.90	-14.80	0.675799086757991	9	2-6,641-637;7-18,635-624	1-1,642-642[UP5];x-x,636-636[BULt];19-21,623-621[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	UGAAGUGGAGGACAAUUUUGAU&UUCAAA-UUGUUUUUCAUUAUU	4	0.999999999473538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN3584_c0_g1_632_TPlot.pdf
TRINITY_DN3584_c0_g1:633	si_a72	TRINITY_DN3584_c0_g1	622	643	633	-21.90	-14.80	0.675799086757991	9.5	3-7,641-637;8-19,635-624	1-2,643-642[UP5];x-x,636-636[BULt];20-21,623-622[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	GAAGUGGAGGACAAUUUUGAUA&UUUCAAA-UUGUUUUUCAUUAU	3	0.999999999680214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN3584_c0_g1_633_TPlot.pdf
TRINITY_DN35850_c0_g1:846	si_a854	TRINITY_DN35850_c0_g1	835	859	846	-25.00	-16.50	0.66	12	1-9,859-851;10-17,846-839	x-x,850-847[BULt];18-21,838-835[UP3]	....((((((((....(((((((((&)))))))))----))))))))....	ACGCAAUUGGAUAAAAUUCAAGUUA&UAACUUGAA----AUCCAAUUAUUA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN35850_c0_g1_846_TPlot.pdf
TRINITY_DN3585_c0_g1:278	si_a69	TRINITY_DN3585_c0_g1	267	287	278	-24.00	-16.80	0.7	7.5	2-16,286-272	1-1,287-287[UP5];17-21,271-267[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CAAGUGAACAAUUUGGAAGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.99999881361456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3585_c0_g1_278_TPlot.pdf
TRINITY_DN3585_c0_g1:279	si_a68	TRINITY_DN3585_c0_g1	268	288	279	-25.40	-16.80	0.661417322834646	8.5	3-17,286-272	1-2,288-287[UP5];18-21,271-268[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGUGAACAAUUUGGAAGAUU&CUUCUUUCAAAUUGUUUUUCA	3	0.999999999999573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3585_c0_g1_279_TPlot.pdf
TRINITY_DN3586_c0_g2:1811	si_s79	TRINITY_DN3586_c0_g2	1800	1820	1811	-26.20	-18.00	0.687022900763359	8.5	1-8,1820-1813;11-17,1810-1804;19-20,1802-1801	9-10,1812-1811[SIL];18-18,1803-1803[SIL];21-21,1800-1800[UP3]	.((.(((((((..((((((((&))))))))..))))))).)).	UGGUGGAGAGGUUAGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3586_c0_g2_1811_TPlot.pdf
TRINITY_DN3586_c0_g2:1813	si_s77	TRINITY_DN3586_c0_g2	1802	1822	1813	-25.50	-17.00	0.666666666666667	10	3-10,1820-1813;13-19,1810-1804;21-21,1802-1802	1-2,1822-1821[UP5];11-12,1812-1811[SIL];20-20,1803-1803[SIL]	(.(((((((..((((((((..&..))))))))..))))))).)	GUGGAGAGGUUAGAAAAGACA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3586_c0_g2_1813_TPlot.pdf
TRINITY_DN3586_c0_g2:1858	si_s825	TRINITY_DN3586_c0_g2	1847	1867	1858	-21.30	-15.40	0.723004694835681	7	2-10,1866-1858;13-21,1855-1847	1-1,1867-1867[UP5];11-12,1857-1856[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	CAAAUUGUUCGUUAUUAUUGG&UUAAUAAUGAAAAACAAUUUG	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN3586_c0_g2_1858_TPlot.pdf
TRINITY_DN35870_c0_g1:29	si_s800	TRINITY_DN35870_c0_g1	19	38	29	-29.70	-20.30	0.683501683501683	6.5	2-14,37-25;16-20,24-20	1-1,38-38[UP5];15-15,x-x[BULq];21-21,19-19[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	UGGUAA-GGGGGUGAAAUACA&CGUAUUUUAUCUUCGUUACCU	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN35870_c0_g1_29_TPlot.pdf
TRINITY_DN35870_c0_g1:52	si_s427	TRINITY_DN35870_c0_g1	42	61	52	-23.00	-17.20	0.747826086956522	4	1-15,61-47;17-18,46-45	16-16,x-x[BULq];19-21,44-42[UP3]	...((-(((((((((((((((&))))))))))))))).))...	AGAGU-AUUAUUGUUAUAUAG&CUAUAUAACAAUAAUUACAUA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN35870_c0_g1_52_TPlot.pdf
TRINITY_DN35870_c0_g1:56	si_s423	TRINITY_DN35870_c0_g1	45	65	56	-21.50	-16.30	0.758139534883721	8	4-19,62-47	1-3,65-63[UP5];20-21,46-45[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUAUUAUUGUUAUAUAGGCAC&UAUUCUAUAUAACAAUAAUUA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN35870_c0_g1_56_TPlot.pdf
TRINITY_DN35870_c0_g1:57	si_s422	TRINITY_DN35870_c0_g1	46	66	57	-21.30	-16.30	0.765258215962441	9	5-20,62-47	1-4,66-63[UP5];21-21,46-46[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAUUAUUGUUAUAUAGGCACU&AUAUUCUAUAUAACAAUAAUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN35870_c0_g1_57_TPlot.pdf
TRINITY_DN3587_c0_g1:1871	si_s804	TRINITY_DN3587_c0_g1	1860	1880	1871	-27.90	-21.80	0.781362007168459	7.5	2-7,1879-1874;9-20,1872-1861	1-1,1880-1880[UP5];8-8,1873-1873[SIL];21-21,1860-1860[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AAGAAGGUAGCGAUGAUGAGG&UUUUAUCUUCGUUACCUUUUC	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3587_c0_g1_1871_TPlot.pdf
TRINITY_DN3587_c0_g1:1872	si_s803	TRINITY_DN3587_c0_g1	1861	1881	1872	-26.00	-21.80	0.838461538461538	8	3-8,1879-1874;10-21,1872-1861	1-2,1881-1880[UP5];9-9,1873-1873[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGAAGGUAGCGAUGAUGAGGA&AUUUUAUCUUCGUUACCUUUU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3587_c0_g1_1872_TPlot.pdf
TRINITY_DN3587_c0_g1:1875	si_s800	TRINITY_DN3587_c0_g1	1864	1886	1875	-29.70	-20.40	0.686868686868687	12.5	1-3,1886-1884;5-11,1880-1874;13-21,1872-1864	4-4,1883-1881[AILt];12-12,1873-1873[SIL]	(((((((((.(((((((...(((&)))--.))))))).)))))))))	AGGUAGCGAUGAUGAGGACCGCG&CGU--AUUUUAUCUUCGUUACCU	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN3587_c0_g1_1875_TPlot.pdf
TRINITY_DN3587_c0_g1:1969	si_s80	TRINITY_DN3587_c0_g1	1958	1978	1969	-28.20	-20.00	0.709219858156028	7.5	2-15,1977-1964;17-19,1962-1960	1-1,1978-1978[UP5];16-16,1963-1963[SIL];20-21,1959-1958[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	UCGGGCGAGAGGAAGGAGAAG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3587_c0_g1_1969_TPlot.pdf
TRINITY_DN3587_c0_g1:1979	si_s69	TRINITY_DN3587_c0_g1	1968	1987	1979	-23.40	-19.10	0.816239316239316	5.5	2-4,1986-1984;6-21,1983-1968	1-1,1987-1987[UP5];5-5,x-x[BULq]	((((((((((((((((-(((.&.))).))))))))))))))))	GGAAGGAGAAGAAUAG-AGUG&AACUUCUAUUUUUUUUCUUUC	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3587_c0_g1_1979_TPlot.pdf
TRINITY_DN35898_c0_g1:297	si_s80	TRINITY_DN35898_c0_g1	284	306	297	-28.20	-18.80	0.666666666666667	13.5	5-10,302-297;11-21,294-284	1-4,306-303[UP5];x-x,296-295[BULt]	(((((((((((..((((((....&....))))))--)))))))))))	GAAGGAGAAAGUCGAGAGGCAAC&UUUUUCUUUC--CUUUCUUCUUC	1	0.627054379558102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN35898_c0_g1_297_TPlot.pdf
TRINITY_DN3589_c0_g1:1740	si_a639	TRINITY_DN3589_c0_g1	1729	1749	1740	-23.60	-15.80	0.669491525423729	10	1-14,1749-1736	15-21,1735-1729[UP3]	.......((((((((((((((&)))))))))))))).......	CGCUUAGACUCAAGAAGAUUG&CGAUUUUUUUGAGUAAUAUAU	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN3589_c0_g1_1740_TPlot.pdf
TRINITY_DN3589_c0_g1:1742	si_a637	TRINITY_DN3589_c0_g1	1731	1751	1742	-25.80	-17.40	0.674418604651163	9	2-16,1750-1736	1-1,1751-1751[UP5];17-21,1735-1731[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUUAGACUCAAGAAGAUUGAA&GUCGAUUUUUUUGAGUAAUAU	3	0.999999855462075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN3589_c0_g1_1742_TPlot.pdf
TRINITY_DN3589_c0_g1:200	si_a404	TRINITY_DN3589_c0_g1	188	209	200	-21.70	-15.50	0.714285714285714	8	1-8,209-202;10-14,200-196;15-20,194-189	9-9,201-201[SIL];x-x,195-195[BULt];21-21,188-188[UP3]	.((((((.(((((.((((((((&)))))))).)))))-)))))).	AAAAUAUCAAGCAUGGCAGUUC&GAAUUGUUUUGUUU-AUAUUUA	2	0.999482891835849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3589_c0_g1_200_TPlot.pdf
TRINITY_DN3589_c0_g1:201	si_a403	TRINITY_DN3589_c0_g1	189	210	201	-22.00	-15.30	0.695454545454545	7.5	2-9,209-202;11-15,200-196;16-21,194-189	1-1,210-210[UP5];10-10,201-201[SIL];x-x,195-195[BULt]	((((((.(((((.((((((((.&.)))))))).)))))-))))))	AAAUAUCAAGCAUGGCAGUUCA&AGAAUUGUUUUGUUU-AUAUUU	2	0.999933670316614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3589_c0_g1_201_TPlot.pdf
TRINITY_DN3590_c0_g1:1269	si_s83	TRINITY_DN3590_c0_g1	1256	1278	1269	-30.90	-21.00	0.679611650485437	6	1-6,1278-1273;8-10,1271-1269;11-21,1266-1256	7-7,1272-1272[SIL];x-x,1268-1267[BULt]	(((((((((((..(((.((((((&)))))).)))--)))))))))))	GAAGAAGAAGAUAAAGAAAAGAA&UUCUUUCCUU--UCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3590_c0_g1_1269_TPlot.pdf
TRINITY_DN3590_c0_g1:2704	si_a415	TRINITY_DN3590_c0_g1	2693	2713	2704	-18.10	-12.10	0.668508287292818	7.5	3-7,2711-2707;9-20,2705-2694	1-2,2713-2712[UP5];8-8,2706-2706[SIL];21-21,2693-2693[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	GUAUAUUUGUUUAUGUAUAUC&UUUAUAUUUAAAUAAAUAUAG	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN3590_c0_g1_2704_TPlot.pdf
TRINITY_DN3590_c0_g1:2705	si_a414	TRINITY_DN3590_c0_g1	2694	2714	2705	-18.10	-11.90	0.657458563535912	8.5	4-8,2711-2707;10-21,2705-2694	1-3,2714-2712[UP5];9-9,2706-2706[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UAUAUUUGUUUAUGUAUAUCU&GUUUAUAUUUAAAUAAAUAUA	4	0.999999469608976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN3590_c0_g1_2705_TPlot.pdf
TRINITY_DN3590_c0_g1:293	si_s68	TRINITY_DN3590_c0_g1	282	302	293	-23.10	-15.40	0.666666666666667	8	1-8,302-295;10-15,293-288;17-18,286-285	9-9,294-294[SIL];16-16,287-287[SIL];19-21,284-282[UP3]	...((.((((((.((((((((&)))))))).)))))).))...	GACGAUGAGAGAAAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3590_c0_g1_293_TPlot.pdf
TRINITY_DN3590_c0_g1:299	si_s69	TRINITY_DN3590_c0_g1	288	308	299	-23.40	-15.30	0.653846153846154	12	5-8,304-301;10-21,299-288	1-4,308-305[UP5];9-9,300-300[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAGAGAAAGAAGUUGGAUGAG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3590_c0_g1_299_TPlot.pdf
TRINITY_DN3591_c0_g1:1383	si_a328	TRINITY_DN3591_c0_g1	1370	1392	1383	-30.10	-21.20	0.704318936877076	9.5	1-7,1392-1386;9-11,1384-1382;12-21,1379-1370	8-8,1385-1385[SIL];x-x,1381-1380[BULt]	((((((((((..(((.(((((((&))))))).)))--))))))))))	GGGAUAAGGAACAUGUAAAGGUC&GAUUUUUUUAU--UCCUUGUCCC	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN3591_c0_g1_1383_TPlot.pdf
TRINITY_DN3591_c0_g1:1532	si_a142	TRINITY_DN3591_c0_g1	1521	1541	1532	-23.50	-16.70	0.71063829787234	14.5	7-19,1535-1523	1-6,1541-1536[UP5];20-21,1522-1521[UP3]	..(((((((((((((......&......)))))))))))))..	CAAAGACAACAGCGACAUCGU&AAUUAAUCGUUGUUGUUUUAA	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3591_c0_g1_1532_TPlot.pdf
TRINITY_DN3591_c0_g1:1729	si_s897	TRINITY_DN3591_c0_g1	1715	1738	1729	-31.30	-25.20	0.805111821086262	8	2-16,1737-1723;17-20,1719-1716	1-1,1738-1738[UP5];x-x,1722-1720[BULt];21-21,1715-1715[UP3]	.((((...(((((((((((((((.&.)))))))))))))))---)))).	CUGAGCCCGUUGAAGAGGAGGCCG&AGGCUUUCUCUUCAAU---UUCAA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN3591_c0_g1_1729_TPlot.pdf
TRINITY_DN3591_c0_g1:1732	si_s894	TRINITY_DN3591_c0_g1	1721	1741	1732	-29.10	-23.90	0.821305841924398	11.5	5-19,1737-1723	1-4,1741-1738[UP5];20-21,1722-1721[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCGUUGAAGAGGAGGCCGAAG&AAUAGGCUUUCUCUUCAAUUU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN3591_c0_g1_1732_TPlot.pdf
TRINITY_DN3591_c0_g1:1733	si_s893	TRINITY_DN3591_c0_g1	1722	1742	1733	-29.10	-23.90	0.821305841924398	12.5	6-20,1737-1723	1-5,1742-1738[UP5];21-21,1722-1722[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGUUGAAGAGGAGGCCGAAGA&AAAUAGGCUUUCUCUUCAAUU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN3591_c0_g1_1733_TPlot.pdf
TRINITY_DN3591_c0_g1:1736	si_s890	TRINITY_DN3591_c0_g1	1725	1745	1736	-29.50	-21.70	0.735593220338983	16.5	9-21,1737-1725	1-8,1745-1738[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGGAGGCCGAAGACGA&AAUAAAUAGGCUUUCUCUUCA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN3591_c0_g1_1736_TPlot.pdf
TRINITY_DN3591_c0_g1:1737	si_s889	TRINITY_DN3591_c0_g1	1726	1746	1737	-28.80	-20.20	0.701388888888889	18	10-21,1737-1726	1-9,1746-1738[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGGAGGCCGAAGACGAU&AAAUAAAUAGGCUUUCUCUUC	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3591_c0_g1_1737_TPlot.pdf
TRINITY_DN3591_c0_g1:1767	si_s68	TRINITY_DN3591_c0_g1	1755	1780	1767	-23.10	-15.60	0.675324675324675	13.5	1-8,1780-1773;9-12,1768-1765;13-21,1763-1755	x-x,1772-1769[BULt];x-x,1764-1764[BULt]	(((((((((.((((....((((((((&))))))))----))))-)))))))))	AAAGAAAGACGAGUUGUAGGAAGUUG&CAACUUCU----AUUU-UUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3591_c0_g1_1767_TPlot.pdf
TRINITY_DN3591_c0_g1:1769	si_a67	TRINITY_DN3591_c0_g1	1758	1778	1769	-27.20	-18.40	0.676470588235294	6.5	1-7,1778-1772;9-11,1770-1768;13-21,1766-1758	8-8,1771-1771[SIL];12-12,1767-1767[SIL]	(((((((((.(((.(((((((&))))))).))).)))))))))	GAAAGACGAGUUGUAGGAAGU&GCUUCUUUCAAAUUGUUUUUC	4	0.999999996258643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3591_c0_g1_1769_TPlot.pdf
TRINITY_DN3591_c0_g1:1794	si_a870	TRINITY_DN3591_c0_g1	1783	1803	1794	-24.80	-16.30	0.657258064516129	8.5	3-18,1801-1786	1-2,1803-1802[UP5];19-21,1785-1783[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGCGCAAUUGAAUUUUUAAAU&UAUUAAAGAUUUAGUUGCAAU	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN3591_c0_g1_1794_TPlot.pdf
TRINITY_DN3591_c0_g1:1797	si_a867	TRINITY_DN3591_c0_g1	1786	1806	1797	-24.10	-15.90	0.659751037344398	11	6-21,1801-1786	1-5,1806-1802[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCAAUUGAAUUUUUAAAUUUA&AAUUAUUAAAGAUUUAGUUGC	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN3591_c0_g1_1797_TPlot.pdf
TRINITY_DN3591_c0_g1:2013	si_s688	TRINITY_DN3591_c0_g1	2002	2021	2013	-28.20	-19.00	0.673758865248227	9	1-9,2021-2013;12-20,2011-2003	10-11,2012-2012[AILq];21-21,2002-2002[UP3]	.(((((((((.-(((((((((&)))))))))..))))))))).	CGUCGAUUAGA-GAAUUCAUG&CAUGAGUUUAAUUAGUCGAUU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN3591_c0_g1_2013_TPlot.pdf
TRINITY_DN3591_c0_g1:2033	si_a691	TRINITY_DN3591_c0_g1	2022	2043	2033	-36.20	-25.20	0.696132596685083	7	1-7,2043-2037;8-19,2035-2024	x-x,2036-2036[BULt];20-21,2023-2022[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AGACUGGUUGUGUUAUGAAGCC&GGUUUCG-AACACAACUGGUAC	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a691_TRINITY_DN3591_c0_g1_2033_TPlot.pdf
TRINITY_DN3591_c0_g1:2034	si_a690	TRINITY_DN3591_c0_g1	2023	2044	2034	-35.90	-26.90	0.749303621169916	6	1-8,2044-2037;9-20,2035-2024	x-x,2036-2036[BULt];21-21,2023-2023[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	GACUGGUUGUGUUAUGAAGCCG&CGGUUUCG-AACACAACUGGUA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a690_TRINITY_DN3591_c0_g1_2034_TPlot.pdf
TRINITY_DN3591_c0_g1:2035	si_a689	TRINITY_DN3591_c0_g1	2024	2045	2035	-38.00	-28.30	0.744736842105263	5.5	1-9,2045-2037;10-21,2035-2024	x-x,2036-2036[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	ACUGGUUGUGUUAUGAAGCCGU&GCGGUUUCG-AACACAACUGGU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a689_TRINITY_DN3591_c0_g1_2035_TPlot.pdf
TRINITY_DN3591_c0_g1:2037	si_a688	TRINITY_DN3591_c0_g1	2025	2046	2037	-38.70	-27.10	0.700258397932817	7	2-10,2045-2037;11-21,2035-2025	1-1,2046-2046[UP5];x-x,2036-2036[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	CUGGUUGUGUUAUGAAGCCGUU&CGCGGUUUCG-AACACAACUGG	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a688_TRINITY_DN3591_c0_g1_2037_TPlot.pdf
TRINITY_DN3591_c0_g1:2038	si_a687	TRINITY_DN3591_c0_g1	2026	2047	2038	-37.10	-24.50	0.660377358490566	9.5	3-11,2045-2037;12-20,2035-2027	1-2,2047-2046[UP5];x-x,2036-2036[BULt];21-21,2026-2026[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	UGGUUGUGUUAUGAAGCCGUUU&ACGCGGUUUCG-AACACAACUG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a687_TRINITY_DN3591_c0_g1_2038_TPlot.pdf
TRINITY_DN3591_c0_g1:2039	si_a686	TRINITY_DN3591_c0_g1	2027	2048	2039	-37.10	-24.20	0.652291105121294	10.5	4-12,2045-2037;13-21,2035-2027	1-3,2048-2046[UP5];x-x,2036-2036[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GGUUGUGUUAUGAAGCCGUUUC&CACGCGGUUUCG-AACACAACU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a686_TRINITY_DN3591_c0_g1_2039_TPlot.pdf
TRINITY_DN3591_c0_g1:251	si_s7	TRINITY_DN3591_c0_g1	240	260	251	-21.70	-16.00	0.737327188940092	12	6-20,255-241	1-5,260-256[UP5];21-21,240-240[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUAUAGUGGUAAUAGGGGAAU&UAUUACUUAUUAUUACUAUAU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN3591_c0_g1_251_TPlot.pdf
TRINITY_DN3593_c0_g1:609	si_s70	TRINITY_DN3593_c0_g1	598	618	609	-25.80	-19.80	0.767441860465116	7.5	2-5,617-614;8-21,611-598	1-1,618-618[UP5];6-7,613-612[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	GGAAAGGAAGAAAGCUGAAGG&ACUUCUAUUUUUUUUCUUUCC	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3593_c0_g1_609_TPlot.pdf
TRINITY_DN3593_c0_g1:828	si_a407	TRINITY_DN3593_c0_g1	817	837	828	-19.80	-12.90	0.651515151515151	10	2-14,836-824	1-1,837-837[UP5];15-21,823-817[UP3]	.......(((((((((((((.&.))))))))))))).......	UCGUCAUUAUAAACAGGACAC&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3593_c0_g1_828_TPlot.pdf
TRINITY_DN3594_c0_g1:2063	si_a627	TRINITY_DN3594_c0_g1	2052	2073	2063	-29.50	-19.60	0.664406779661017	10.5	1-4,2073-2070;7-17,2066-2056	5-6,2069-2067[AILt];18-21,2055-2052[UP3]	....(((((((((((...((((&))))-..)))))))))))....	ACAUAGUCGACAUAACGUCGCC&GGCG-UAUUAUGUCGAUUUUUU	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN3594_c0_g1_2063_TPlot.pdf
TRINITY_DN3594_c0_g1:2064	si_a626	TRINITY_DN3594_c0_g1	2053	2074	2064	-30.20	-19.80	0.655629139072848	10.5	2-5,2073-2070;8-18,2066-2056	1-1,2074-2074[UP5];6-7,2069-2067[AILt];19-21,2055-2053[UP3]	...(((((((((((...((((.&.))))-..)))))))))))...	CAUAGUCGACAUAACGUCGCCC&AGGCG-UAUUAUGUCGAUUUUU	2	0.998999857313047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN3594_c0_g1_2064_TPlot.pdf
TRINITY_DN3594_c0_g1:2381	si_s897	TRINITY_DN3594_c0_g1	2370	2393	2381	-31.30	-21.04	0.67220447284345	13	1-8,2393-2386;10-19,2381-2372	9-9,2385-2382[AILt];20-21,2371-2370[UP3]	..((((((((((....((((((((&))))))))---.))))))))))..	UCGGAGUUGAAGCUUUGGGAGCCU&AGGCUUUC---UCUUCAAUUUCAA	3	0.999979807954259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN3594_c0_g1_2381_TPlot.pdf
TRINITY_DN3594_c0_g1:2382	si_s896	TRINITY_DN3594_c0_g1	2371	2394	2382	-31.60	-21.04	0.665822784810127	13	2-9,2393-2386;11-20,2381-2372	1-1,2394-2394[UP5];10-10,2385-2382[AILt];21-21,2371-2371[UP3]	.((((((((((....((((((((.&.))))))))---.)))))))))).	CGGAGUUGAAGCUUUGGGAGCCUU&UAGGCUUUC---UCUUCAAUUUCA	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3594_c0_g1_2382_TPlot.pdf
TRINITY_DN3594_c0_g1:2386	si_s895	TRINITY_DN3594_c0_g1	2372	2395	2386	-31.10	-20.64	0.663665594855305	14	3-10,2393-2386;12-21,2381-2372	1-2,2395-2394[UP5];11-11,2385-2382[AILt]	((((((((((....((((((((..&..))))))))---.))))))))))	GGAGUUGAAGCUUUGGGAGCCUUC&AUAGGCUUUC---UCUUCAAUUUC	3	0.999988774176646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3594_c0_g1_2386_TPlot.pdf
TRINITY_DN3594_c0_g1:2483	si_s87	TRINITY_DN3594_c0_g1	2466	2493	2483	-32.90	-21.50	0.653495440729483	18	1-6,2493-2488;7-10,2486-2483;11-19,2476-2468	x-x,2487-2487[BULt];x-x,2482-2477[BULt];20-21,2467-2466[UP3]	..(((((((((......((((.((((((&))))))-))))------)))))))))..	ACGCGAAGAAGUAUAUCGAGACAGGGAA&UUCCUU-UCUU------CUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3594_c0_g1_2483_TPlot.pdf
TRINITY_DN3594_c0_g1:2484	si_s86	TRINITY_DN3594_c0_g1	2467	2493	2484	-32.90	-22.30	0.677811550151976	17	1-6,2493-2488;8-11,2486-2483;12-20,2476-2468	7-7,2487-2487[SIL];x-x,2482-2477[BULt];21-21,2467-2467[UP3]	.(((((((((......((((.((((((&)))))).))))------))))))))).	CGCGAAGAAGUAUAUCGAGACAGGGAA&UUUCCUUUCUU------CUUCUUCGCU	2	0.999999999929391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3594_c0_g1_2484_TPlot.pdf
TRINITY_DN3594_c0_g1:2485	si_s85	TRINITY_DN3594_c0_g1	2468	2494	2485	-33.80	-24.30	0.718934911242604	16	1-7,2494-2488;9-12,2486-2483;13-21,2476-2468	8-8,2487-2487[SIL];x-x,2482-2477[BULt]	(((((((((......((((.(((((((&))))))).))))------)))))))))	GCGAAGAAGUAUAUCGAGACAGGGAAG&CUUUCCUUUCUU------CUUCUUCGC	2	0.999442797370729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3594_c0_g1_2485_TPlot.pdf
TRINITY_DN3594_c0_g1:908	si_s629	TRINITY_DN3594_c0_g1	896	917	908	-34.60	-22.60	0.653179190751445	9.5	2-11,916-907;12-17,905-900	1-1,917-917[UP5];x-x,906-906[BULt];18-21,899-896[UP3]	....((((((.((((((((((.&.))))))))))-))))))....	GCGGUGCCUGUCGAGAAGAUCC&CGAUCUUUUCG-UAGGCGUUUG	4	0.999974296613986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3594_c0_g1_908_TPlot.pdf
TRINITY_DN35961_c0_g1:235	si_a375	TRINITY_DN35961_c0_g1	224	244	235	-24.00	-18.00	0.75	6	1-11,244-234;13-20,232-225	12-12,233-233[SIL];21-21,224-224[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	AAGUUCGGAUUUAUUUUUGGU&AUCAAAAAUGAUUUCGAAUUA	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN35961_c0_g1_235_TPlot.pdf
TRINITY_DN35962_c0_g1:2372	si_s79	TRINITY_DN35962_c0_g1	2361	2382	2372	-26.20	-17.50	0.66793893129771	8	1-8,2382-2375;9-16,2373-2366;19-21,2363-2361	x-x,2374-2374[BULt];17-18,2365-2364[SIL]	(((..((((((((.((((((((&))))))))-))))))))..)))	GAGUCGAAAGGAGAAGGAGAAG&UUUUUUCU-UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN35962_c0_g1_2372_TPlot.pdf
TRINITY_DN3596_c0_g1:257	si_a33	TRINITY_DN3596_c0_g1	246	267	257	-37.80	-25.10	0.664021164021164	7.5	1-8,267-260;10-14,257-253;16-19,251-248;21-21,246-246	9-9,259-258[AILt];15-15,252-252[SIL];20-20,247-247[SIL]	(.((((.(((((..((((((((&))))))))-.))))).)))).)	GUCCUAGCGGUCACUAGAGCUG&UAGUUCUA-AGACCGGUAGGUC	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a33_TRINITY_DN3596_c0_g1_257_TPlot.pdf
TRINITY_DN3596_c0_g1:763	si_s530	TRINITY_DN3596_c0_g1	753	772	763	-29.50	-19.40	0.657627118644068	4.5	1-4,772-769;6-12,767-761;14-18,760-756;20-21,754-753	5-5,768-768[SIL];13-13,x-x[BULq];19-19,755-755[SIL]	((.(((((-(((((((.((((&)))).))))))).))))).))	GUGGGAUC-AAAAUGACUUCG&CGAAAUCAUUUUUGAUCCGAU	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN3596_c0_g1_763_TPlot.pdf
TRINITY_DN3596_c0_g1:765	si_s528	TRINITY_DN3596_c0_g1	755	774	765	-29.40	-19.70	0.670068027210884	5	2-6,773-769;8-14,767-761;16-20,760-756	1-1,774-774[UP5];7-7,768-768[SIL];15-15,x-x[BULq];21-21,755-755[UP3]	.(((((-(((((((.(((((.&.))))).))))))).))))).	GGGAUC-AAAAUGACUUCGAC&UUCGAAAUCAUUUUUGAUCCG	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN3596_c0_g1_765_TPlot.pdf
TRINITY_DN3596_c0_g1:766	si_s527	TRINITY_DN3596_c0_g1	756	775	766	-28.00	-19.10	0.682142857142857	6	3-7,773-769;9-15,767-761;17-21,760-756	1-2,775-774[UP5];8-8,768-768[SIL];16-16,x-x[BULq]	(((((-(((((((.(((((..&..))))).))))))).)))))	GGAUC-AAAAUGACUUCGACG&AUUCGAAAUCAUUUUUGAUCC	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN3596_c0_g1_766_TPlot.pdf
TRINITY_DN3596_c0_g1:818	si_s367	TRINITY_DN3596_c0_g1	808	827	818	-39.40	-26.10	0.66243654822335	5.5	2-7,826-821;9-14,819-814;16-21,813-808	1-1,827-827[UP5];8-8,820-820[SIL];15-15,x-x[BULq]	((((((-((((((.((((((.&.)))))).)))))).))))))	CACGUG-GCGGUCAGUUCAAA&AUUGAACCGAUCGCUCGCGUG	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN3596_c0_g1_818_TPlot.pdf
TRINITY_DN35978_c0_g2:116	si_a402	TRINITY_DN35978_c0_g2	105	125	116	-22.40	-14.80	0.660714285714286	10.5	1-12,125-114;14-16,112-110	13-13,113-113[SIL];17-21,109-105[UP3]	.....(((.((((((((((((&)))))))))))).))).....	GAACGGAGGGAGACGAUUCUG&UAGAAUUGUUUUGUUUAUAUU	4	0.999999999999288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN35978_c0_g2_116_TPlot.pdf
TRINITY_DN35978_c0_g2:812	si_s635	TRINITY_DN35978_c0_g2	801	821	812	-39.80	-27.10	0.680904522613065	8.5	1-6,821-816;8-16,814-806;18-20,804-802	7-7,815-815[SIL];17-17,805-805[SIL];21-21,801-801[UP3]	.(((.(((((((((.((((((&)))))).))))))))).))).	UGAGAGCAGGCGCCGGCGGGA&UUUCGUAGGCGUUUGCCCUCG	0	0.105567855984475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN35978_c0_g2_812_TPlot.pdf
TRINITY_DN35978_c0_g2:813	si_s634	TRINITY_DN35978_c0_g2	802	822	813	-38.30	-27.30	0.712793733681462	7	1-7,822-816;9-17,814-806;19-21,804-802	8-8,815-815[SIL];18-18,805-805[SIL]	(((.(((((((((.(((((((&))))))).))))))))).)))	GAGAGCAGGCGCCGGCGGGAA&UUUUCGUAGGCGUUUGCCCUC	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN35978_c0_g2_813_TPlot.pdf
TRINITY_DN35978_c0_g2:815	si_s632	TRINITY_DN35978_c0_g2	804	824	815	-38.20	-27.80	0.727748691099476	8	1-9,824-816;11-19,814-806	10-10,815-815[SIL];20-21,805-804[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GAGCAGGCGCCGGCGGGAAGA&UCUUUUCGUAGGCGUUUGCCC	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN35978_c0_g2_815_TPlot.pdf
TRINITY_DN35978_c0_g2:816	si_s631	TRINITY_DN35978_c0_g2	805	825	816	-36.00	-27.80	0.772222222222222	8	2-10,824-816;12-20,814-806	1-1,825-825[UP5];11-11,815-815[SIL];21-21,805-805[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AGCAGGCGCCGGCGGGAAGAG&AUCUUUUCGUAGGCGUUUGCC	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN35978_c0_g2_816_TPlot.pdf
TRINITY_DN3597_c0_g1:752	si_a351	TRINITY_DN3597_c0_g1	741	761	752	-20.50	-15.80	0.770731707317073	3	1-7,761-755;9-21,753-741	8-8,754-754[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GUUAAAAUAGAAUAAAUAUUU&AAAUAUUAAUUCUAUUUUGAU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN3597_c0_g1_752_TPlot.pdf
TRINITY_DN3598_c1_g1:456	si_a548	TRINITY_DN3598_c1_g1	445	464	456	-27.20	-17.70	0.650735294117647	8.5	2-4,463-461;7-7,458-458;9-21,457-445	1-1,464-464[UP5];5-6,460-459[SIL];8-8,x-x[BULq]	(((((((((((((-(..(((.&.)))..).)))))))))))))	GAGAUAAGGAAGU-GUGUGAU&UUCAAUCUAUUUCUUUAUCUC	2	0.999361043358898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN3598_c1_g1_456_TPlot.pdf
TRINITY_DN3599_c1_g1:26	si_a111	TRINITY_DN3599_c1_g1	15	35	26	-26.20	-19.10	0.729007633587786	13.5	7-19,29-17	1-6,35-30[UP5];20-21,16-15[UP3]	..(((((((((((((......&......)))))))))))))..	UUAAGCAAGCUCGUAAUUGAA&AUAAAAUACGAGCUUGUUUUA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN3599_c1_g1_26_TPlot.pdf
TRINITY_DN3599_c1_g1:528	si_s3	TRINITY_DN3599_c1_g1	519	537	528	-21.20	-14.60	0.688679245283019	7	1-14,537-524;17-20,523-520	15-16,x-x[BULq];21-21,519-519[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	UGUGA--GUAGGUAAUGUAGA&UUUAUAUUACUUAUUAUUACU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN3599_c1_g1_528_TPlot.pdf
TRINITY_DN3599_c1_g1:530	si_s1	TRINITY_DN3599_c1_g1	519	539	530	-18.70	-14.80	0.79144385026738	8	2-17,538-523	1-1,539-539[UP5];18-21,522-519[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGUGAGUAGGUAAUGUAGAAU&UUUUUAUAUUACUUAUUAUUA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN3599_c1_g1_530_TPlot.pdf
TRINITY_DN359_c0_g3:1575	si_a145	TRINITY_DN359_c0_g3	1566	1584	1575	-28.10	-18.40	0.654804270462633	10	4-14,1581-1571;18-21,1569-1566	1-3,1584-1582[UP5];15-17,1570-1570[AILq]	((((.--(((((((((((...&...)))))))))))...))))	GCCUC--GACAACAGCGAGGU&UAAUCGUUGUUGUUUUAAGGU	4	0.999999550347238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN359_c0_g3_1575_TPlot.pdf
TRINITY_DN359_c0_g3:16	si_a786	TRINITY_DN359_c0_g3	6	26	16	-26.60	-18.10	0.680451127819549	5	1-6,26-21;8-14,18-12;16-21,11-6	7-7,20-19[AILt];15-15,x-x[BULq]	((((((-(((((((..((((((&))))))-.))))))).))))))	GGAAAA-AGAAAAAGAAGAAGA&UCUUCU-AUUUUUCUAUUUUCC	2	0.999999548991085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN359_c0_g3_16_TPlot.pdf
TRINITY_DN359_c0_g3:1954	si_a450	TRINITY_DN359_c0_g3	1943	1963	1954	-25.20	-16.90	0.670634920634921	7	2-7,1962-1957;9-18,1955-1946	1-1,1963-1963[UP5];8-8,1956-1956[SIL];19-21,1945-1943[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UUUUAUAACAACGUUUAUCUG&GAGAUAAUUGUUGUUAUAUAU	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN359_c0_g3_1954_TPlot.pdf
TRINITY_DN359_c0_g3:1955	si_a449	TRINITY_DN359_c0_g3	1944	1964	1955	-25.70	-17.20	0.669260700389105	7	1-1,1964-1964;3-8,1962-1957;10-19,1955-1946	2-2,1963-1963[SIL];9-9,1956-1956[SIL];20-21,1945-1944[UP3]	..((((((((((.((((((.(&).)))))).))))))))))..	UUUAUAACAACGUUUAUCUGA&UGAGAUAAUUGUUGUUAUAUA	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN359_c0_g3_1955_TPlot.pdf
TRINITY_DN359_c0_g3:1957	si_a447	TRINITY_DN359_c0_g3	1946	1966	1957	-25.70	-17.10	0.665369649805448	8	3-3,1964-1964;5-10,1962-1957;12-21,1955-1946	1-2,1966-1965[UP5];4-4,1963-1963[SIL];11-11,1956-1956[SIL]	((((((((((.((((((.(..&..).)))))).))))))))))	UAUAACAACGUUUAUCUGAAU&UAUGAGAUAAUUGUUGUUAUA	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN359_c0_g3_1957_TPlot.pdf
TRINITY_DN359_c0_g3:658	si_a638	TRINITY_DN359_c0_g3	647	667	658	-24.40	-16.70	0.684426229508197	8	2-6,666-662;8-20,660-648	1-1,667-667[UP5];7-7,661-661[SIL];21-21,647-647[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AAUGUUGCUCAAGGUAAUUGU&UCGAUUUUUUUGAGUAAUAUA	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN359_c0_g3_658_TPlot.pdf
TRINITY_DN35_c0_g1:1833	si_a323	TRINITY_DN35_c0_g1	1822	1844	1833	-26.80	-18.20	0.67910447761194	8	1-4,1844-1841;5-6,1839-1838;7-20,1836-1823	x-x,1840-1840[BULt];x-x,1837-1837[BULt];21-21,1822-1822[UP3]	.((((((((((((((.((.((((&))))-))-)))))))))))))).	UGGGAAUAAGAAAAUACGUUGGG&UCCA-UG-AUUUUUUUAUUCCUU	3	0.999987827342778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN35_c0_g1_1833_TPlot.pdf
TRINITY_DN35_c0_g1:3474	si_a499	TRINITY_DN35_c0_g1	3453	3483	3474	-35.20	-23.00	0.653409090909091	14	1-10,3483-3474;12-14,3472-3470;15-21,3459-3453	11-11,3473-3473[SIL];x-x,3469-3460[BULt]	(((((((..........(((.((((((((((&)))))))))).)))----------)))))))	CCGGGGAUGUUCAGAAAAGAAGAAGAACGAC&GUCGUUUUUCGUCU----------UCCUUGG	2	0.999999992486479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN35_c0_g1_3474_TPlot.pdf
TRINITY_DN3600_c0_g1:1215	si_s724	TRINITY_DN3600_c0_g1	1204	1226	1215	-31.70	-21.56	0.6801261829653	15.5	3-7,1224-1220;11-20,1214-1205	1-2,1226-1225[UP5];8-10,1219-1215[AILt];21-21,1204-1204[UP3]	.((((((((((.....(((((..&..)))))--...)))))))))).	CCCCGUCUGGAGCCUCUGUCUGU&AAAGAUA--UUAUCUAGACGGGU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN3600_c0_g1_1215_TPlot.pdf
TRINITY_DN3600_c0_g1:1593	si_s74	TRINITY_DN3600_c0_g1	1582	1600	1593	-25.00	-17.70	0.708	10	1-7,1600-1594;11-21,1592-1582	8-10,1593-1593[AILq]	(((((((((((.--(((((((&)))))))...)))))))))))	GGAGGGGAGGAU--GAAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999999953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3600_c0_g1_1593_TPlot.pdf
TRINITY_DN3600_c0_g1:745	si_s796	TRINITY_DN3600_c0_g1	734	752	745	-30.30	-21.66	0.714851485148515	11	1-7,752-746;13-21,742-734	8-12,745-743[AILq]	(((((((((...--(((((((&))))))).....)))))))))	GGCGAAGAUUUG--ACGAGCU&AGCUCGUAUUUUAUCUUCGUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3600_c0_g1_745_TPlot.pdf
TRINITY_DN3600_c0_g1:840	si_a504	TRINITY_DN3600_c0_g1	826	849	840	-32.90	-23.88	0.725835866261398	7.5	1-11,849-839;12-16,837-833;19-21,828-826	x-x,838-838[BULt];17-18,832-829[AILt]	(((....(((((.(((((((((((&)))))))))))-)))))--..)))	GCAGGUGCCAAGAGAAGACGAAGA&UUUUCGUCUUC-CUUGG--AAUGU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN3600_c0_g1_840_TPlot.pdf
TRINITY_DN3601_c0_g1:1099	si_s69	TRINITY_DN3601_c0_g1	1088	1108	1099	-23.40	-15.60	0.666666666666667	8.5	3-7,1106-1102;9-20,1100-1089	1-2,1108-1107[UP5];8-8,1101-1101[SIL];21-21,1088-1088[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AGAAGAAAAAAGACAGAGGAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3601_c0_g1_1099_TPlot.pdf
TRINITY_DN36027_c0_g1:453	si_s82	TRINITY_DN36027_c0_g1	441	463	453	-28.90	-22.80	0.788927335640139	7.5	1-6,463-458;7-12,456-451;13-21,449-441	x-x,457-457[BULt];x-x,450-450[BULt]	(((((((((.((((((.((((((&))))))-))))))-)))))))))	GAGAAGAAGAAGAGGACGAGGAA&UUUCUU-UCCUUU-CUUCUUCUU	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN36027_c0_g1_453_TPlot.pdf
TRINITY_DN3603_c0_g1:2918	si_a784	TRINITY_DN3603_c0_g1	2907	2927	2918	-24.70	-17.90	0.724696356275304	7.5	1-12,2927-2916;14-16,2914-2912	13-13,2915-2915[SIL];17-21,2911-2907[UP3]	.....(((.((((((((((((&)))))))))))).))).....	AAUUCGGACGAAUAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	3	0.999995393414573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3603_c0_g1_2918_TPlot.pdf
TRINITY_DN3603_c0_g1:2922	si_a780	TRINITY_DN3603_c0_g1	2911	2931	2922	-27.30	-18.10	0.663003663003663	10	5-16,2927-2916;18-20,2914-2912	1-4,2931-2928[UP5];17-17,2915-2915[SIL];21-21,2911-2911[UP3]	.(((.((((((((((((....&....)))))))))))).))).	CGGACGAAUAGAAGAGUAAGA&UUCAACUCUUCUAUUUUUCUA	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN3603_c0_g1_2922_TPlot.pdf
TRINITY_DN3603_c0_g1:2923	si_a779	TRINITY_DN3603_c0_g1	2912	2933	2923	-27.00	-18.80	0.696296296296296	6	1-4,2933-2930;6-17,2927-2916;19-21,2914-2912	5-5,2929-2928[AILt];18-18,2915-2915[SIL]	(((.((((((((((((..((((&))))-.)))))))))))).)))	GGACGAAUAGAAGAGUAAGAAU&AUUC-AACUCUUCUAUUUUUCU	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN3603_c0_g1_2923_TPlot.pdf
TRINITY_DN3603_c0_g1:2924	si_a778	TRINITY_DN3603_c0_g1	2913	2934	2924	-28.30	-18.90	0.667844522968198	6	1-5,2934-2930;7-18,2927-2916;20-21,2914-2913	6-6,2929-2928[AILt];19-19,2915-2915[SIL]	((.((((((((((((..(((((&)))))-.)))))))))))).))	GACGAAUAGAAGAGUAAGAAUU&GAUUC-AACUCUUCUAUUUUUC	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN3603_c0_g1_2924_TPlot.pdf
TRINITY_DN3603_c0_g1:3367	si_a519	TRINITY_DN3603_c0_g1	3353	3376	3367	-40.30	-27.60	0.684863523573201	10.5	1-7,3376-3370;9-12,3368-3365;13-21,3361-3353	8-8,3369-3369[SIL];x-x,3364-3362[BULt]	(((((((((...((((.(((((((&))))))).))))---)))))))))	UUGCGUGUCGUGCGCUCUGCAUUC&GAAUGUAAGGCG---GACACGCGA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a519_TRINITY_DN3603_c0_g1_3367_TPlot.pdf
TRINITY_DN3603_c0_g1:5662	si_s887	TRINITY_DN3603_c0_g1	5650	5671	5662	-26.80	-17.90	0.667910447761194	15.5	8-18,5664-5654;19-21,5652-5650	1-7,5671-5665[UP5];x-x,5653-5653[BULt]	(((.(((((((((((.......&.......)))))))))))-)))	GGAUGAAAGCCUGUUGGGUACU&AAAAAUAAAUAGGCUUUC-UCU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN3603_c0_g1_5662_TPlot.pdf
TRINITY_DN36052_c0_g2:205	si_a317	TRINITY_DN36052_c0_g2	194	214	205	-24.30	-17.88	0.735802469135802	8	1-9,214-206;13-21,202-194	10-12,205-203[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	UAAGAAGAUAUGGGAUAAGUC&GAUUUAUCCAUGAUUUUUUUA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN36052_c0_g2_205_TPlot.pdf
TRINITY_DN36067_c0_g1:426	si_s172	TRINITY_DN36067_c0_g1	415	435	426	-40.30	-28.90	0.71712158808933	9	4-20,432-416	1-3,435-433[UP5];21-21,415-415[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGCUUGGGCAUUUUUGCCAUA&AGGGGUAAAGAUGCCCGAGUA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s172_TRINITY_DN36067_c0_g1_426_TPlot.pdf
TRINITY_DN36067_c0_g1:431	si_s167	TRINITY_DN36067_c0_g1	420	441	431	-44.60	-30.92	0.693273542600897	9.5	1-5,441-437;9-21,432-420	6-8,436-433[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	GGGCAUUUUUGCCAUACGGCCA&UGGCC-AGGGGUAAAGAUGCCC	1	0.0076091744415322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s167_TRINITY_DN36067_c0_g1_431_TPlot.pdf
TRINITY_DN36067_c0_g1:432	si_s166	TRINITY_DN36067_c0_g1	421	442	432	-42.40	-27.82	0.656132075471698	10.5	2-6,441-437;10-21,432-421	1-1,442-442[UP5];7-9,436-433[AILt]	((((((((((((....(((((.&.)))))-...))))))))))))	GGCAUUUUUGCCAUACGGCCAG&AUGGCC-AGGGGUAAAGAUGCC	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s166_TRINITY_DN36067_c0_g1_432_TPlot.pdf
TRINITY_DN3606_c0_g1:2154	si_a314	TRINITY_DN3606_c0_g1	2143	2167	2154	-27.10	-18.00	0.664206642066421	13.5	1-6,2167-2162;7-16,2157-2148	x-x,2161-2158[BULt];17-21,2147-2143[UP3]	.....((((((((((....((((((&))))))----)))))))))).....	UGACUUCGUGGAUAAACGUAUCCAA&UUGGAU----UUAUCCAUGAUUUUU	4	0.999999458546671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3606_c0_g1_2154_TPlot.pdf
TRINITY_DN3607_c0_g1:198	si_a319	TRINITY_DN3607_c0_g1	187	207	198	-22.40	-15.10	0.674107142857143	12.5	5-18,203-190	1-4,207-204[UP5];19-21,189-187[UP3]	...((((((((((((((....&....))))))))))))))...	CUGGAGAGAAUUAUGGAAUCG&UUUAUCCAUGAUUUUUUUAUU	4	0.99999999999716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3607_c0_g1_198_TPlot.pdf
TRINITY_DN36082_c1_g1:168	si_a324	TRINITY_DN36082_c1_g1	151	177	168	-27.50	-21.70	0.789090909090909	11.5	1-16,177-162;17-21,155-151	x-x,161-156[BULt]	(((((......((((((((((((((((&))))))))))))))))------)))))	CAGGGGGGUCAGAUGAGGAGAUCGUGG&CCAUGAUUUUUUUAUU------CCUUG	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN36082_c1_g1_168_TPlot.pdf
TRINITY_DN36082_c1_g1:171	si_a321	TRINITY_DN36082_c1_g1	157	180	171	-26.70	-18.80	0.704119850187266	11	3-19,178-162;20-21,158-157	1-2,180-179[UP5];x-x,161-159[BULt]	((...(((((((((((((((((..&..)))))))))))))))))---))	GGUCAGAUGAGGAGAUCGUGGGGU&UAUCCAUGAUUUUUUUAUU---CC	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN36082_c1_g1_171_TPlot.pdf
TRINITY_DN36084_c0_g1:1276	si_a482	TRINITY_DN36084_c0_g1	1265	1284	1276	-26.70	-17.90	0.670411985018727	6	1-6,1284-1279;8-21,1278-1265	7-7,x-x[BULq]	((((((((((((((-((((((&)))))).))))))))))))))	CGACAUAUUUUAUG-GAUAAU&AUUGUUAUAUAGAAUAUGUCG	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN36084_c0_g1_1276_TPlot.pdf
TRINITY_DN3610_c0_g1:77	si_s71	TRINITY_DN3610_c0_g1	65	86	77	-25.70	-18.40	0.715953307392996	7	1-5,86-82;7-17,80-70;18-20,68-66	6-6,81-81[SIL];x-x,69-69[BULt];21-21,65-65[UP3]	.(((.(((((((((((.(((((&))))).)))))))))))-))).	CGGACGAGAGAGGAAAAAGAAG&CUUCUAUUUUUUUUCUU-UCCU	4	0.999999999999719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3610_c0_g1_77_TPlot.pdf
TRINITY_DN3610_c0_g1:78	si_s70	TRINITY_DN3610_c0_g1	66	87	78	-25.80	-18.10	0.701550387596899	7	2-6,86-82;8-18,80-70;19-21,68-66	1-1,87-87[UP5];7-7,81-81[SIL];x-x,69-69[BULt]	(((.(((((((((((.(((((.&.))))).)))))))))))-)))	GGACGAGAGAGGAAAAAGAAGA&ACUUCUAUUUUUUUUCUU-UCC	2	0.999999896161008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3610_c0_g1_78_TPlot.pdf
TRINITY_DN3610_c0_g1:82	si_s77	TRINITY_DN3610_c0_g1	69	91	82	-25.50	-19.90	0.780392156862745	8	1-11,91-81;12-20,78-70	x-x,80-79[BULt];21-21,69-69[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	CGAGAGAGGAAAAAGAAGAAGAA&UUUUUUUUCUU--UCCUUUCUUC	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3610_c0_g1_82_TPlot.pdf
TRINITY_DN3611_c0_g1:1238	si_a320	TRINITY_DN3611_c0_g1	1226	1247	1238	-24.40	-16.30	0.668032786885246	8.5	2-11,1246-1237;13-21,1234-1226	1-1,1247-1247[UP5];12-12,1236-1235[AILt]	(((((((((..((((((((((.&.))))))))))-.)))))))))	GGGUGGAAGUUAUUAUGGAUAC&UUAUCCAUGAU-UUUUUUAUUC	4	0.999999880015248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN3611_c0_g1_1238_TPlot.pdf
TRINITY_DN3611_c0_g1:1644	si_a171	TRINITY_DN3611_c0_g1	1633	1653	1644	-32.10	-25.10	0.781931464174455	10	5-18,1649-1636	1-4,1653-1650[UP5];19-21,1635-1633[UP3]	...((((((((((((((....&....))))))))))))))...	GGAUAUCUAGACGGGUGUCCU&UAUUCACCCGUCUAGAUAAUA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN3611_c0_g1_1644_TPlot.pdf
TRINITY_DN3611_c0_g1:2196	si_a69	TRINITY_DN3611_c0_g1	2185	2203	2196	-24.00	-16.10	0.670833333333333	8	1-8,2203-2196;11-19,2195-2187	9-10,x-x[BULq];20-21,2186-2185[UP3]	..(((((((((--((((((((&))))))))..)))))))))..	GGGAAGGACGA--UGAAAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.99999999990314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3611_c0_g1_2196_TPlot.pdf
TRINITY_DN3611_c0_g1:2197	si_s76	TRINITY_DN3611_c0_g1	2184	2206	2197	-23.60	-16.28	0.689830508474576	11	1-10,2206-2197;13-20,2192-2185	11-12,2196-2193[AILt];21-21,2184-2184[UP3]	.((((((((....((((((((((&))))))))))--..)))))))).	UGGGAAGGACGAUGAAAGAAAAU&AUUUUUUUUC--UUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3611_c0_g1_2197_TPlot.pdf
TRINITY_DN3611_c0_g1:2199	si_s74	TRINITY_DN3611_c0_g1	2186	2208	2199	-25.00	-16.38	0.6552	8.5	2-12,2207-2197;15-21,2192-2186	1-1,2208-2208[UP5];13-14,2196-2193[AILt]	(((((((....(((((((((((.&.)))))))))))--..)))))))	GGAAGGACGAUGAAAGAAAAUAC&CUAUUUUUUUUC--UUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3611_c0_g1_2199_TPlot.pdf
TRINITY_DN3611_c0_g1:366	si_s841	TRINITY_DN3611_c0_g1	355	375	366	-34.00	-22.60	0.664705882352941	5	1-4,375-372;6-21,370-355	5-5,371-371[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	GUUGACUUGUUUUUUUGAAAU&AUUUGAAAGAAGCGAGUCGAC	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s841_TRINITY_DN3611_c0_g1_366_TPlot.pdf
TRINITY_DN3611_c0_g1:873	si_a635	TRINITY_DN3611_c0_g1	861	882	873	-26.10	-17.90	0.685823754789272	5	1-6,882-877;8-16,875-867;17-20,865-862	7-7,876-876[SIL];x-x,866-866[BULt];21-21,861-861[UP3]	.((((.(((((((((.((((((&)))))).)))))))))-)))).	CUUACAUCAAAAGAAGCGACAU&AUGUCGAUUUUUUUGA-GUAAU	2	0.999854708090646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN3611_c0_g1_873_TPlot.pdf
TRINITY_DN3611_c0_g1:874	si_a634	TRINITY_DN3611_c0_g1	862	883	874	-26.40	-17.80	0.674242424242424	5	2-7,882-877;9-17,875-867;18-21,865-862	1-1,883-883[UP5];8-8,876-876[SIL];x-x,866-866[BULt]	((((.(((((((((.((((((.&.)))))).)))))))))-))))	UUACAUCAAAAGAAGCGACAUU&UAUGUCGAUUUUUUUGA-GUAA	2	0.999931998497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN3611_c0_g1_874_TPlot.pdf
TRINITY_DN36134_c0_g1:548	si_a412	TRINITY_DN36134_c0_g1	537	557	548	-18.30	-12.50	0.683060109289617	7	1-6,557-552;9-21,549-537	7-8,551-550[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UAUUUAUUUGAAUCAGAAUAA&UUGUUUAUAUUUAAAUAAAUA	2	0.997609809439789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN36134_c0_g1_548_TPlot.pdf
TRINITY_DN3614_c0_g1:564	si_s215	TRINITY_DN3614_c0_g1	554	573	564	-37.40	-25.10	0.671122994652406	5.5	1-13,573-561;16-20,559-555	14-15,560-560[AILq];21-21,554-554[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	ACACGUC-UUUCGAGCACAGC&GUUGUGUUCGAAACCGCGUGA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN3614_c0_g1_564_TPlot.pdf
TRINITY_DN3614_c0_g1:565	si_s214	TRINITY_DN3614_c0_g1	555	574	565	-37.10	-26.50	0.714285714285714	4.5	1-14,574-561;17-21,559-555	15-16,560-560[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	CACGUC-UUUCGAGCACAGCU&AGUUGUGUUCGAAACCGCGUG	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s214_TRINITY_DN3614_c0_g1_565_TPlot.pdf
TRINITY_DN36157_c0_g1:4698	si_a757	TRINITY_DN36157_c0_g1	4685	4707	4698	-33.10	-21.90	0.661631419939577	11	2-7,4706-4701;9-12,4699-4696;13-20,4693-4686	1-1,4707-4707[UP5];8-8,4700-4700[SIL];x-x,4695-4694[BULt];21-21,4685-4685[UP3]	.((((((((..((((.((((((.&.)))))).))))--)))))))).	CGUCAGGGACUCCCGCAGGAGGC&ACCUCCUUUGGG--UUUUUGAUU	3	0.999999997627277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN36157_c0_g1_4698_TPlot.pdf
TRINITY_DN36157_c0_g1:4699	si_a756	TRINITY_DN36157_c0_g1	4686	4708	4699	-33.10	-21.90	0.661631419939577	10	3-8,4706-4701;10-13,4699-4696;14-21,4693-4686	1-2,4708-4707[UP5];9-9,4700-4700[SIL];x-x,4695-4694[BULt]	((((((((..((((.((((((..&..)))))).))))--))))))))	GUCAGGGACUCCCGCAGGAGGCU&AACCUCCUUUGGG--UUUUUGAU	3	0.999999995180967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN36157_c0_g1_4699_TPlot.pdf
TRINITY_DN36157_c0_g1:4822	si_a54	TRINITY_DN36157_c0_g1	4811	4831	4822	-37.30	-24.30	0.651474530831099	8.5	2-15,4830-4817	1-1,4831-4831[UP5];16-21,4816-4811[UP3]	......((((((((((((((.&.))))))))))))))......	AACGCUGUGAGUCGACUCUUC&UAGGAGUCGACUCGCUUCUUU	3	0.999913265931978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN36157_c0_g1_4822_TPlot.pdf
TRINITY_DN3617_c0_g1:1174	si_s102	TRINITY_DN3617_c0_g1	1163	1189	1174	-34.10	-22.30	0.653958944281525	16.5	3-7,1187-1183;8-20,1176-1164	1-2,1189-1188[UP5];x-x,1182-1177[BULt];21-21,1163-1163[UP3]	.(((((((((((((......(((((..&..)))))------))))))))))))).	AUGUUUUCCAAUCCAUGGGAGAAGCCC&UCGCUUC------GGAUUGGAAAAUAG	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN3617_c0_g1_1174_TPlot.pdf
TRINITY_DN3617_c0_g1:1175	si_s101	TRINITY_DN3617_c0_g1	1164	1190	1175	-32.50	-22.10	0.68	17.5	4-8,1187-1183;9-21,1176-1164	1-3,1190-1188[UP5];x-x,1182-1177[BULt]	(((((((((((((......(((((...&...)))))------)))))))))))))	UGUUUUCCAAUCCAUGGGAGAAGCCCC&UUCGCUUC------GGAUUGGAAAAUA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN3617_c0_g1_1175_TPlot.pdf
TRINITY_DN3617_c0_g1:1275	si_a664	TRINITY_DN3617_c0_g1	1264	1285	1275	-29.60	-21.70	0.733108108108108	7.5	2-9,1284-1277;10-19,1275-1266	1-1,1285-1285[UP5];x-x,1276-1276[BULt];20-21,1265-1264[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	CCAGGGAAUCAAUUGGGUAUUA&AAAUGCCUA-UUGAUUCCUUAU	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN3617_c0_g1_1275_TPlot.pdf
TRINITY_DN3617_c0_g1:1277	si_a663	TRINITY_DN3617_c0_g1	1265	1286	1277	-31.40	-21.70	0.691082802547771	8.5	3-10,1284-1277;11-20,1275-1266	1-2,1286-1285[UP5];x-x,1276-1276[BULt];21-21,1265-1265[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	CAGGGAAUCAAUUGGGUAUUAG&GAAAUGCCUA-UUGAUUCCUUA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN3617_c0_g1_1277_TPlot.pdf
TRINITY_DN3618_c0_g1:3352	si_s74	TRINITY_DN3618_c0_g1	3341	3362	3352	-25.00	-16.50	0.66	6.5	2-6,3361-3357;7-17,3355-3345;19-21,3343-3341	1-1,3362-3362[UP5];x-x,3356-3356[BULt];18-18,3344-3344[SIL]	(((.(((((((((((.(((((.&.)))))-))))))))))).)))	GAAUGGAGAGGAAAAUAGAUAA&CUAUUU-UUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3618_c0_g1_3352_TPlot.pdf
TRINITY_DN3618_c0_g1:3495	si_s559	TRINITY_DN3618_c0_g1	3484	3504	3495	-27.80	-20.00	0.719424460431655	7	2-15,3503-3490;17-18,3488-3487	1-1,3504-3504[UP5];16-16,3489-3489[SIL];19-21,3486-3484[UP3]	...((.((((((((((((((.&.)))))))))))))).))...	GCAGUGCCGAAAGUGUUAAUA&AAUUAAUAUUUUCGGGACAAG	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN3618_c0_g1_3495_TPlot.pdf
TRINITY_DN3618_c0_g1:3497	si_s557	TRINITY_DN3618_c0_g1	3486	3506	3497	-28.80	-20.00	0.694444444444444	9	4-17,3503-3490;19-20,3488-3487	1-3,3506-3504[UP5];18-18,3489-3489[SIL];21-21,3486-3486[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	AGUGCCGAAAGUGUUAAUAUU&AGAAUUAAUAUUUUCGGGACA	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN3618_c0_g1_3497_TPlot.pdf
TRINITY_DN3618_c0_g1:647	si_s82	TRINITY_DN3618_c0_g1	636	655	647	-28.90	-19.20	0.664359861591695	6	1-6,655-650;8-18,649-639	7-7,x-x[BULq];19-21,638-636[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	UUUAGGAAGAAAGG-AAGAAG&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3618_c0_g1_647_TPlot.pdf
TRINITY_DN3618_c0_g1:650	si_s79	TRINITY_DN3618_c0_g1	639	658	650	-26.20	-19.30	0.736641221374046	8.5	4-9,655-650;11-21,649-639	1-3,658-656[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	AGGAAGAAAGG-AAGAAGCCU&UUUUUUCUUUCCUUUCUUCUU	2	0.999999998491447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3618_c0_g1_650_TPlot.pdf
TRINITY_DN3619_c0_g1:757	si_s610	TRINITY_DN3619_c0_g1	746	766	757	-27.20	-18.18	0.668382352941176	11	4-9,763-758;13-21,754-746	1-3,766-764[UP5];10-12,757-755[SIL]	(((((((((...((((((...&...))))))...)))))))))	CGCUUGGAUGGUAAAAAGUUC&AAUCUUUUUUAAAUCCAAGCG	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN3619_c0_g1_757_TPlot.pdf
TRINITY_DN3619_c0_g1:854	si_s524	TRINITY_DN3619_c0_g1	843	865	854	-23.90	-15.70	0.656903765690377	11	4-8,862-858;9-20,855-844	1-3,865-863[UP5];x-x,857-856[BULt];21-21,843-843[UP3]	.((((((((((((..(((((...&...)))))--)))))))))))).	CCAGAAGUGAUUUAGCGAAUAUA&UUAAUUCG--AAAUCAUUUUUGA	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN3619_c0_g1_854_TPlot.pdf
TRINITY_DN3619_c0_g1:905	si_s87	TRINITY_DN3619_c0_g1	894	916	905	-32.90	-21.50	0.653495440729483	9	1-7,916-910;8-8,908-908;10-20,905-895	x-x,909-909[BULt];9-9,907-906[AILt];21-21,894-894[UP3]	.(((((((((((..(.(((((((&)))))))-)-.))))))))))).	UAGUGAAGAGGAUCGAAAAGGAG&UUCCUUU-C-UUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3619_c0_g1_905_TPlot.pdf
TRINITY_DN361_c0_g2:277	si_s743	TRINITY_DN361_c0_g2	265	286	277	-29.00	-18.90	0.651724137931034	8.5	1-11,286-276;12-17,274-269	x-x,275-275[BULt];18-21,268-265[UP3]	....((((((.(((((((((((&)))))))))))-))))))....	GUUCAAGGUUAAGUCUAUUCAU&GUGAAUAGAUU-GACCUUAAAA	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN361_c0_g2_277_TPlot.pdf
TRINITY_DN361_c0_g3:676	si_a23	TRINITY_DN361_c0_g3	665	685	676	-22.80	-16.80	0.736842105263158	9	4-14,682-672;16-21,670-665	1-3,685-683[UP5];15-15,671-671[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UCUUAGUACUGAAGAUGAUGA&UAUUUAUUUUUAGUUCUAAGA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN361_c0_g3_676_TPlot.pdf
TRINITY_DN3620_c0_g1:803	si_s79	TRINITY_DN3620_c0_g1	792	812	803	-26.20	-17.90	0.683206106870229	11	5-16,808-797;18-19,795-794	1-4,812-809[UP5];17-17,796-796[SIL];20-21,793-792[UP3]	..((.((((((((((((....&....)))))))))))).))..	UCGAUGAAAGGAAAGAGUUUU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3620_c0_g1_803_TPlot.pdf
TRINITY_DN3620_c0_g1:807	si_s75	TRINITY_DN3620_c0_g1	796	816	807	-24.00	-16.10	0.670833333333333	17	9-20,808-797	1-8,816-809[UP5];21-21,796-796[UP3]	.((((((((((((........&........)))))))))))).	UGAAAGGAAAGAGUUUUUAAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3620_c0_g1_807_TPlot.pdf
TRINITY_DN3620_c0_g1:808	si_s74	TRINITY_DN3620_c0_g1	797	822	808	-25.00	-17.00	0.68	14	1-4,822-819;6-9,817-814;10-21,808-797	5-5,818-818[SIL];x-x,813-809[BULt]	((((((((((((.....((((.((((&)))).))))-----))))))))))))	GAAAGGAAAGAGUUUUUAAAGCAUAG&CUAUUUUUU-----UUCUUUCCUUUC	0	0.700522457038635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3620_c0_g1_808_TPlot.pdf
TRINITY_DN36213_c0_g1:124	si_a23	TRINITY_DN36213_c0_g1	113	133	124	-22.80	-15.60	0.684210526315789	8	3-17,131-117	1-2,133-132[UP5];18-21,116-113[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGAAGAACUAAAAAUGAAAC&UAUUUAUUUUUAGUUCUAAGA	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN36213_c0_g1_124_TPlot.pdf
TRINITY_DN36213_c0_g1:125	si_a22	TRINITY_DN36213_c0_g1	114	134	125	-23.50	-15.60	0.663829787234043	9	4-18,131-117	1-3,134-132[UP5];19-21,116-114[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAGAACUAAAAAUGAAACG&CUAUUUAUUUUUAGUUCUAAG	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN36213_c0_g1_125_TPlot.pdf
TRINITY_DN3622_c0_g1:344	si_a767	TRINITY_DN3622_c0_g1	333	353	344	-30.10	-20.70	0.687707641196013	5.5	1-16,353-338	17-21,337-333[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCCCAGAAUCAAUCAAAAACU&GGUUUUUGAUUGAUUCAACUC	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN3622_c0_g1_344_TPlot.pdf
TRINITY_DN3623_c0_g1:1983	si_s802	TRINITY_DN3623_c0_g1	1972	1992	1983	-26.40	-17.70	0.670454545454545	11.5	6-21,1987-1972	1-5,1992-1988[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGGUAGUGGAGAUAUUAAA&UAUUUUAUCUUCGUUACCUUU	2	0.999992940807132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3623_c0_g1_1983_TPlot.pdf
TRINITY_DN36259_c0_g1:231	si_a867	TRINITY_DN36259_c0_g1	220	241	231	-24.10	-16.00	0.663900414937759	6	2-9,240-233;10-20,231-221	1-1,241-241[UP5];x-x,232-232[BULt];21-21,220-220[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	CUAACUGAAUCUGUUAAUGAUC&AAUUAUUAA-AGAUUUAGUUGC	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN36259_c0_g1_231_TPlot.pdf
TRINITY_DN3625_c0_g1:1035	si_s312	TRINITY_DN3625_c0_g1	1023	1044	1035	-29.00	-19.00	0.655172413793103	7.5	3-6,1042-1039;8-18,1037-1027;19-21,1025-1023	1-2,1044-1043[UP5];7-7,1038-1038[SIL];x-x,1026-1026[BULt]	(((.(((((((((((.((((..&..)))).)))))))))))-)))	UAGUCAAGAAGGACAAGAUUAU&AAAAUUCUGUCCUUCUUG-UUA	2	0.999999995199871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3625_c0_g1_1035_TPlot.pdf
TRINITY_DN3625_c0_g1:1084	si_s590	TRINITY_DN3625_c0_g1	1073	1100	1084	-33.70	-22.06	0.65459940652819	21.5	2-8,1099-1093;12-21,1082-1073	1-1,1100-1100[UP5];9-11,1092-1083[AILt]	((((((((((..........(((((((.&.)))))))-------...))))))))))	UCGCUUGGGUCAAUAGAAGUUCCAUGAC&AUCAUGGA-------UAAAUCCAAGCGA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s590_TRINITY_DN3625_c0_g1_1084_TPlot.pdf
TRINITY_DN3625_c0_g1:1174	si_s440	TRINITY_DN3625_c0_g1	1163	1183	1174	-21.60	-14.60	0.675925925925926	9	4-16,1180-1168;18-20,1166-1164	1-3,1183-1181[UP5];17-17,1167-1167[SIL];21-21,1163-1163[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	AUGUAAUAUAUGAUGUGUCUC&AUUACAUAUUAUAUAUAACAA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN3625_c0_g1_1174_TPlot.pdf
TRINITY_DN3625_c0_g1:1175	si_s439	TRINITY_DN3625_c0_g1	1164	1184	1175	-21.50	-14.40	0.669767441860465	10	5-17,1180-1168;19-21,1166-1164	1-4,1184-1181[UP5];18-18,1167-1167[SIL]	(((.(((((((((((((....&....))))))))))))).)))	UGUAAUAUAUGAUGUGUCUCA&AAUUACAUAUUAUAUAUAACA	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN3625_c0_g1_1175_TPlot.pdf
TRINITY_DN3625_c0_g1:1489	si_a664	TRINITY_DN3625_c0_g1	1478	1498	1489	-29.60	-19.70	0.66554054054054	9	1-10,1498-1489;13-17,1486-1482	11-12,1488-1487[SIL];18-21,1481-1478[UP3]	....(((((..((((((((((&))))))))))..)))))....	AAAUGGAAUAUAUGGGCAUUU&AAAUGCCUAUUGAUUCCUUAU	4	0.999874024885933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN3625_c0_g1_1489_TPlot.pdf
TRINITY_DN3625_c0_g1:1491	si_a662	TRINITY_DN3625_c0_g1	1480	1500	1491	-33.40	-23.50	0.703592814371258	6	2-12,1499-1489;15-19,1486-1482	1-1,1500-1500[UP5];13-14,1488-1487[SIL];20-21,1481-1480[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	AUGGAAUAUAUGGGCAUUUCA&GGAAAUGCCUAUUGAUUCCUU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a662_TRINITY_DN3625_c0_g1_1491_TPlot.pdf
TRINITY_DN3625_c0_g1:1492	si_a661	TRINITY_DN3625_c0_g1	1481	1501	1492	-35.80	-23.50	0.656424581005587	7	3-13,1499-1489;16-20,1486-1482	1-2,1501-1500[UP5];14-15,1488-1487[SIL];21-21,1481-1481[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	UGGAAUAUAUGGGCAUUUCAA&GGGAAAUGCCUAUUGAUUCCU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a661_TRINITY_DN3625_c0_g1_1492_TPlot.pdf
TRINITY_DN3625_c0_g1:665	si_s818	TRINITY_DN3625_c0_g1	654	674	665	-23.70	-15.60	0.658227848101266	6.5	1-12,674-663;14-15,661-660;17-18,658-657	13-13,662-662[SIL];16-16,659-659[SIL];19-21,656-654[UP3]	...((.((.((((((((((((&)))))))))))).)).))...	GGAUUGGUCAUUAAGAGAAGG&CCUUUUCUUAAUAAUGAAAAA	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN3625_c0_g1_665_TPlot.pdf
TRINITY_DN3625_c0_g1:880	si_a189	TRINITY_DN3625_c0_g1	869	889	880	-32.10	-20.90	0.651090342679128	9	1-6,889-884;9-16,881-874	7-8,883-882[SIL];17-21,873-869[UP3]	.....((((((((..((((((&))))))..)))))))).....	UAGAAGAACAGGGUCAGAUAU&AUAUCUUUCCCUGUUCACUAA	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN3625_c0_g1_880_TPlot.pdf
TRINITY_DN3625_c0_g1:919	si_a313	TRINITY_DN3625_c0_g1	908	931	919	-28.70	-18.98	0.661324041811847	16.5	1-5,931-927;10-21,919-908	6-9,926-920[AILt]	((((((((((((.......(((((&)))))---....))))))))))))	GAAGUCGUGGAUUUGGACACCAGG&CUUGG---AUUUAUCCAUGAUUUU	2	0.998987331601569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN3625_c0_g1_919_TPlot.pdf
TRINITY_DN3626_c0_g1:1486	si_s490	TRINITY_DN3626_c0_g1	1475	1496	1486	-17.80	-12.50	0.702247191011236	9	3-7,1494-1490;9-21,1487-1475	1-2,1496-1495[UP5];8-8,1489-1488[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	UUUUGUUUAUGUUAGAAGUAUU&UUUAUUU-AAAUAUAAACAAAA	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN3626_c0_g1_1486_TPlot.pdf
TRINITY_DN3627_c0_g1:387	si_s518	TRINITY_DN3627_c0_g1	375	396	387	-24.60	-17.00	0.691056910569106	8	1-6,396-391;8-11,389-386;12-20,384-376	7-7,390-390[SIL];x-x,385-385[BULt];21-21,375-375[UP3]	.(((((((((.((((.((((((&)))))).))))-))))))))).	UUGAUUUCGAGGUUAUGGAUGU&AUAUUCUUAAU-UCGAAAUCAU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN3627_c0_g1_387_TPlot.pdf
TRINITY_DN3627_c0_g1:389	si_s516	TRINITY_DN3627_c0_g1	377	398	389	-25.80	-19.60	0.75968992248062	5.5	1-8,398-391;10-13,389-386;14-21,384-377	9-9,390-390[SIL];x-x,385-385[BULt]	((((((((.((((.((((((((&)))))))).))))-))))))))	GAUUUCGAGGUUAUGGAUGUAG&CUAUAUUCUUAAU-UCGAAAUC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN3627_c0_g1_389_TPlot.pdf
TRINITY_DN3627_c0_g1:539	si_s74	TRINITY_DN3627_c0_g1	527	549	539	-25.00	-19.20	0.768	6	1-6,549-544;7-16,542-533;17-21,531-527	x-x,543-543[BULt];x-x,532-532[BULt]	(((((.((((((((((.((((((&))))))-))))))))))-)))))	GAAAGCGAAAGAGAGAUAAAUGG&CUAUUU-UUUUUCUUUC-CUUUC	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3627_c0_g1_539_TPlot.pdf
TRINITY_DN3627_c0_g1:545	si_s69	TRINITY_DN3627_c0_g1	533	554	545	-23.40	-16.10	0.688034188034188	10	4-11,551-544;12-21,542-533	1-3,554-552[UP5];x-x,543-543[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	GAAAGAGAGAUAAAUGGAGAUA&AACUUCUAUUU-UUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3627_c0_g1_545_TPlot.pdf
TRINITY_DN3628_c0_g1:1877	si_s746	TRINITY_DN3628_c0_g1	1866	1886	1877	-27.00	-17.80	0.659259259259259	12.5	5-7,1882-1880;9-20,1878-1867	1-4,1886-1883[UP5];8-8,1879-1879[SIL];21-21,1866-1866[UP3]	.((((((((((((.(((....&....))).)))))))))))).	AUGUUUUGAGGUUUGUCAGAC&AAUAGAUUGACCUUAAAACAA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN3628_c0_g1_1877_TPlot.pdf
TRINITY_DN3628_c0_g1:546	si_a67	TRINITY_DN3628_c0_g1	535	554	546	-27.20	-18.00	0.661764705882353	4.5	1-8,554-547;10-13,546-543;15-21,541-535	9-9,x-x[BULq];14-14,542-542[SIL]	(((((((.((((-((((((((&)))))))).)))).)))))))	GGAAAACUAUUU-AGAGAAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.999999899966703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3628_c0_g1_546_TPlot.pdf
TRINITY_DN3628_c0_g1:893	si_a20	TRINITY_DN3628_c0_g1	882	902	893	-26.70	-17.60	0.659176029962547	5	1-4,902-899;6-14,897-889;17-21,886-882	5-5,898-898[SIL];15-16,888-887[SIL]	(((((..(((((((((.((((&)))).)))))))))..)))))	UAGAAGCAAAAAUAGAAAGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.999999959821998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN3628_c0_g1_893_TPlot.pdf
TRINITY_DN36291_c0_g1:1516	si_a710	TRINITY_DN36291_c0_g1	1504	1525	1516	-28.00	-19.10	0.682142857142857	5	1-14,1525-1512;15-17,1510-1508	x-x,1511-1511[BULt];18-21,1507-1504[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	CAACCGAGUUAUUUUGGAAUGU&ACAUUCCAAAAUAA-UCGUUAC	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a710_TRINITY_DN36291_c0_g1_1516_TPlot.pdf
TRINITY_DN36291_c0_g1:1517	si_a709	TRINITY_DN36291_c0_g1	1505	1526	1517	-26.60	-19.10	0.718045112781955	5	2-15,1525-1512;16-18,1510-1508	1-1,1526-1526[UP5];x-x,1511-1511[BULt];19-21,1507-1505[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	AACCGAGUUAUUUUGGAAUGUC&UACAUUCCAAAAUAA-UCGUUA	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN36291_c0_g1_1517_TPlot.pdf
TRINITY_DN36291_c0_g1:1522	si_a704	TRINITY_DN36291_c0_g1	1511	1530	1522	-29.30	-21.70	0.74061433447099	5.5	3-5,1528-1526;7-21,1525-1511	1-2,1530-1529[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GUUAUUUUGGAAUGU-CCAUC&ACUGGUACAUUCCAAAAUAAU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN36291_c0_g1_1522_TPlot.pdf
TRINITY_DN36291_c0_g1:167	si_s682	TRINITY_DN36291_c0_g1	156	176	167	-26.60	-17.40	0.654135338345865	8.5	1-15,176-162	16-21,161-156[UP3]	......(((((((((((((((&)))))))))))))))......	UGCAAGAAGCUCGUGUUUUUA&UAGAAACAUGAGUUUAAUUAG	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s682_TRINITY_DN36291_c0_g1_167_TPlot.pdf
TRINITY_DN36291_c0_g1:170	si_s679	TRINITY_DN36291_c0_g1	159	179	170	-25.20	-17.40	0.69047619047619	10.5	4-18,176-162	1-3,179-177[UP5];19-21,161-159[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAGAAGCUCGUGUUUUUAAUG&UUAUAGAAACAUGAGUUUAAU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN36291_c0_g1_170_TPlot.pdf
TRINITY_DN36291_c0_g1:1983	si_a757	TRINITY_DN36291_c0_g1	1972	1992	1983	-33.10	-21.90	0.661631419939577	9	1-2,1992-1991;5-19,1988-1974	3-4,1990-1989[SIL];20-21,1973-1972[UP3]	..(((((((((((((((..((&))..)))))))))))))))..	UUUCAGAAGCUCAGAGGUCGU&ACCUCCUUUGGGUUUUUGAUU	3	0.999999998176299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN36291_c0_g1_1983_TPlot.pdf
TRINITY_DN36291_c0_g1:2325	si_s806	TRINITY_DN36291_c0_g1	2313	2334	2325	-28.60	-18.90	0.660839160839161	7.5	1-10,2334-2325;12-17,2323-2318;18-19,2316-2315	11-11,2324-2324[SIL];x-x,2317-2317[BULt];20-21,2314-2313[UP3]	..((.((((((.((((((((((&)))))))))).))))))-))..	GCGAUGAAGGUUAUGAAGAUGA&UUAUCUUCGUUACCUUU-UCUU	2	0.999999940690776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN36291_c0_g1_2325_TPlot.pdf
TRINITY_DN36291_c0_g1:2327	si_s804	TRINITY_DN36291_c0_g1	2315	2336	2327	-27.90	-19.50	0.698924731182796	5.5	2-12,2335-2325;14-19,2323-2318;20-21,2316-2315	1-1,2336-2336[UP5];13-13,2324-2324[SIL];x-x,2317-2317[BULt]	((.((((((.(((((((((((.&.))))))))))).))))))-))	GAUGAAGGUUAUGAAGAUGAAU&UUUUAUCUUCGUUACCUUU-UC	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN36291_c0_g1_2327_TPlot.pdf
TRINITY_DN36291_c0_g1:2329	si_s802	TRINITY_DN36291_c0_g1	2318	2338	2329	-26.40	-19.20	0.727272727272727	8	4-14,2335-2325;16-21,2323-2318	1-3,2338-2336[UP5];15-15,2324-2324[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAAGGUUAUGAAGAUGAAUAC&UAUUUUAUCUUCGUUACCUUU	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN36291_c0_g1_2329_TPlot.pdf
TRINITY_DN36291_c0_g1:2519	si_a844	TRINITY_DN36291_c0_g1	2506	2528	2519	-29.20	-19.60	0.671232876712329	6.5	1-3,2528-2526;5-16,2524-2513;17-21,2510-2506	4-4,2525-2525[SIL];x-x,2512-2511[BULt]	(((((..((((((((((((.(((&))).))))))))))))--)))))	AUUUCUUGGGUUAGCAGCUGCUG&UAGAAGUUGCUAACUU--GAAAU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN36291_c0_g1_2519_TPlot.pdf
TRINITY_DN36291_c0_g1:805	si_s83	TRINITY_DN36291_c0_g1	794	817	805	-30.90	-21.18	0.685436893203884	11	2-3,816-815;4-8,813-809;11-21,804-794	1-1,817-817[UP5];x-x,814-814[BULt];9-10,808-805[AILt]	(((((((((((....(((((.((.&.))-)))))--..)))))))))))	GAAGAAGAAGAUUCUGGAAAUGAC&UUC-UUUCC--UUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN36291_c0_g1_805_TPlot.pdf
TRINITY_DN36293_c0_g1:1430	si_a756	TRINITY_DN36293_c0_g1	1417	1439	1430	-33.10	-22.00	0.664652567975831	10	3-13,1437-1427;14-19,1424-1419	1-2,1439-1438[UP5];x-x,1426-1425[BULt];20-21,1418-1417[UP3]	..((((((..(((((((((((..&..)))))))))))--))))))..	UGCAGAAGAUCCUAGAGGAGGAU&AACCUCCUUUGGG--UUUUUGAU	4	0.999999985978956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN36293_c0_g1_1430_TPlot.pdf
TRINITY_DN36293_c0_g1:2642	si_s798	TRINITY_DN36293_c0_g1	2631	2651	2642	-29.30	-19.90	0.679180887372014	7.5	1-1,2651-2651;3-18,2649-2634	2-2,2650-2650[SIL];19-21,2633-2631[UP3]	...((((((((((((((((.(&).))))))))))))))))...	GCCAUGAAGAUGGAAUACGUG&CUCGUAUUUUAUCUUCGUUAC	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN36293_c0_g1_2642_TPlot.pdf
TRINITY_DN36293_c0_g1:2644	si_s796	TRINITY_DN36293_c0_g1	2633	2654	2644	-30.30	-20.70	0.683168316831683	8.5	2-4,2653-2651;5-20,2649-2634	1-1,2654-2654[UP5];x-x,2650-2650[BULt];21-21,2633-2633[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	CAUGAAGAUGGAAUACGUGGUG&AGCU-CGUAUUUUAUCUUCGUU	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN36293_c0_g1_2644_TPlot.pdf
TRINITY_DN36293_c0_g1:2645	si_s795	TRINITY_DN36293_c0_g1	2634	2655	2645	-30.30	-20.70	0.683168316831683	9	3-5,2653-2651;6-21,2649-2634	1-2,2655-2654[UP5];x-x,2650-2650[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	AUGAAGAUGGAAUACGUGGUGA&AAGCU-CGUAUUUUAUCUUCGU	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN36293_c0_g1_2645_TPlot.pdf
TRINITY_DN36293_c0_g1:992	si_a639	TRINITY_DN36293_c0_g1	981	1001	992	-23.60	-16.70	0.707627118644068	8	1-3,1001-999;5-10,997-992;12-19,990-983	4-4,998-998[SIL];11-11,991-991[SIL];20-21,982-981[UP3]	..((((((((.((((((.(((&))).)))))).))))))))..	UGGUAUUGCUGGAAAAAUUCG&CGAUUUUUUUGAGUAAUAUAU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN36293_c0_g1_992_TPlot.pdf
TRINITY_DN36293_c0_g1:993	si_a638	TRINITY_DN36293_c0_g1	982	1002	993	-24.40	-16.70	0.684426229508197	8	2-4,1001-999;6-11,997-992;13-20,990-983	1-1,1002-1002[UP5];5-5,998-998[SIL];12-12,991-991[SIL];21-21,982-982[UP3]	.((((((((.((((((.(((.&.))).)))))).)))))))).	GGUAUUGCUGGAAAAAUUCGU&UCGAUUUUUUUGAGUAAUAUA	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN36293_c0_g1_993_TPlot.pdf
TRINITY_DN3629_c0_g1:1888	si_s823	TRINITY_DN3629_c0_g1	1876	1897	1888	-22.20	-14.60	0.657657657657658	5.5	1-15,1897-1883;16-20,1881-1877	x-x,1882-1882[BULt];21-21,1876-1876[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	UAUUGUAUUUUUGUUAUUGAGG&UCUUAAUAAUGAAAA-ACAAUU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN3629_c0_g1_1888_TPlot.pdf
TRINITY_DN3629_c0_g1:1889	si_s822	TRINITY_DN3629_c0_g1	1877	1898	1889	-22.30	-14.70	0.659192825112108	6	2-16,1897-1883;17-21,1881-1877	1-1,1898-1898[UP5];x-x,1882-1882[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	AUUGUAUUUUUGUUAUUGAGGC&UUCUUAAUAAUGAAAA-ACAAU	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN3629_c0_g1_1889_TPlot.pdf
TRINITY_DN362_c0_g1:1024	si_a143	TRINITY_DN362_c0_g1	1013	1033	1024	-25.10	-17.50	0.697211155378486	10.5	4-18,1030-1016	1-3,1033-1031[UP5];19-21,1015-1013[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUGAAAACGGCGACGAUUCCG&AUUAAUCGUUGUUGUUUUAAG	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN362_c0_g1_1024_TPlot.pdf
TRINITY_DN362_c0_g1:1027	si_a140	TRINITY_DN362_c0_g1	1016	1036	1027	-25.20	-17.10	0.678571428571429	12.5	7-21,1030-1016	1-6,1036-1031[UP5]	(((((((((((((((......&......)))))))))))))))	AAAACGGCGACGAUUCCGAUC&GUAAUUAAUCGUUGUUGUUUU	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN362_c0_g1_1027_TPlot.pdf
TRINITY_DN362_c0_g1:245	si_a784	TRINITY_DN362_c0_g1	236	254	245	-24.70	-16.70	0.676113360323887	8	2-10,253-245;13-20,244-237	1-1,254-254[UP5];11-12,x-x[BULq];21-21,236-236[UP3]	.((((((((--(((((((((.&.)))))))))..)))))))).	CAAAUAGAA--GUAGAAGGGA&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN362_c0_g1_245_TPlot.pdf
TRINITY_DN362_c0_g1:246	si_a783	TRINITY_DN362_c0_g1	237	255	246	-24.70	-16.70	0.676113360323887	8	3-11,253-245;14-21,244-237	1-2,255-254[UP5];12-13,x-x[BULq]	((((((((--(((((((((..&..)))))))))..))))))))	AAAUAGAA--GUAGAAGGGAC&AACUCUUCUAUUUUUCUAUUU	4	0.99999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN362_c0_g1_246_TPlot.pdf
TRINITY_DN362_c0_g1:560	si_a643	TRINITY_DN362_c0_g1	550	569	560	-28.30	-18.70	0.660777385159011	12	5-11,565-559;15-21,556-550	1-4,569-566[UP5];12-14,558-557[AILq]	(((((((..-(((((((....&....)))))))...)))))))	CCCGAUAGA-UACUCAGUCCU&UUUUUUGAGUAAUAUAUCGGG	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN362_c0_g1_560_TPlot.pdf
TRINITY_DN362_c0_g1:598	si_a354	TRINITY_DN362_c0_g1	587	607	598	-26.20	-17.30	0.66030534351145	15.5	8-21,600-587	1-7,607-601[UP5]	((((((((((((((.......&.......))))))))))))))	CUGAUCAAAGUAGGUAUAACC&UAUUAAUUCUAUUUUGAUCGG	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN362_c0_g1_598_TPlot.pdf
TRINITY_DN362_c0_g1:647	si_s109	TRINITY_DN362_c0_g1	636	656	647	-26.50	-19.90	0.750943396226415	7	1-9,656-648;11-16,646-641	10-10,647-647[SIL];17-21,640-636[UP3]	.....((((((.(((((((((&))))))))).)))))).....	UCCAGUUCUAUCUUCCAAUCC&GGAUUGGAAAAUAGAAAAAUA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN362_c0_g1_647_TPlot.pdf
TRINITY_DN362_c0_g1:648	si_s108	TRINITY_DN362_c0_g1	637	657	648	-27.60	-20.00	0.72463768115942	7	2-10,656-648;12-17,646-641	1-1,657-657[UP5];11-11,647-647[SIL];18-21,640-637[UP3]	....((((((.(((((((((.&.))))))))).))))))....	CCAGUUCUAUCUUCCAAUCCA&CGGAUUGGAAAAUAGAAAAAU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN362_c0_g1_648_TPlot.pdf
TRINITY_DN362_c0_g1:649	si_s107	TRINITY_DN362_c0_g1	638	658	649	-28.50	-20.00	0.701754385964912	8	3-11,656-648;13-18,646-641	1-2,658-657[UP5];12-12,647-647[SIL];19-21,640-638[UP3]	...((((((.(((((((((..&..))))))))).))))))...	CAGUUCUAUCUUCCAAUCCAA&UCGGAUUGGAAAAUAGAAAAA	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s107_TRINITY_DN362_c0_g1_649_TPlot.pdf
TRINITY_DN362_c0_g1:650	si_s106	TRINITY_DN362_c0_g1	639	659	650	-28.60	-20.00	0.699300699300699	8	4-12,656-648;14-19,646-641	1-3,659-657[UP5];13-13,647-647[SIL];20-21,640-639[UP3]	..((((((.(((((((((...&...))))))))).))))))..	AGUUCUAUCUUCCAAUCCAAA&UUCGGAUUGGAAAAUAGAAAA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s106_TRINITY_DN362_c0_g1_650_TPlot.pdf
TRINITY_DN362_c0_g1:651	si_s105	TRINITY_DN362_c0_g1	640	660	651	-30.20	-20.00	0.662251655629139	9	5-13,656-648;15-20,646-641	1-4,660-657[UP5];14-14,647-647[SIL];21-21,640-640[UP3]	.((((((.(((((((((....&....))))))))).)))))).	GUUCUAUCUUCCAAUCCAAAC&CUUCGGAUUGGAAAAUAGAAA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s105_TRINITY_DN362_c0_g1_651_TPlot.pdf
TRINITY_DN362_c0_g1:83	si_a456	TRINITY_DN362_c0_g1	72	92	83	-22.80	-14.90	0.653508771929825	8	3-15,90-78;17-19,76-74	1-2,92-91[UP5];16-16,77-77[SIL];20-21,73-72[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	GUUAUCGUGUAUAACAGCAUU&AUUGUUGUUAUAUAUAAUAUG	3	0.999956421867691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN362_c0_g1_83_TPlot.pdf
TRINITY_DN362_c0_g1:84	si_a455	TRINITY_DN362_c0_g1	73	93	84	-21.10	-14.90	0.706161137440758	9	4-16,90-78;18-20,76-74	1-3,93-91[UP5];17-17,77-77[SIL];21-21,73-73[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	UUAUCGUGUAUAACAGCAUUA&AAUUGUUGUUAUAUAUAAUAU	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN362_c0_g1_84_TPlot.pdf
TRINITY_DN362_c0_g1:85	si_a454	TRINITY_DN362_c0_g1	74	94	85	-21.30	-14.80	0.694835680751174	10	5-17,90-78;19-21,76-74	1-4,94-91[UP5];18-18,77-77[SIL]	(((.(((((((((((((....&....))))))))))))).)))	UAUCGUGUAUAACAGCAUUAA&UAAUUGUUGUUAUAUAUAAUA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN362_c0_g1_85_TPlot.pdf
TRINITY_DN362_c0_g1:86	si_a453	TRINITY_DN362_c0_g1	75	95	86	-21.10	-14.40	0.682464454976303	14	6-18,90-78	1-5,95-91[UP5];19-21,77-75[UP3]	...(((((((((((((.....&.....)))))))))))))...	AUCGUGUAUAACAGCAUUAAC&AUAAUUGUUGUUAUAUAUAAU	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN362_c0_g1_86_TPlot.pdf
TRINITY_DN362_c0_g2:469	si_a360	TRINITY_DN362_c0_g2	457	478	469	-29.10	-21.40	0.735395189003436	6	2-15,477-464;16-19,462-459	1-1,478-478[UP5];x-x,463-463[BULt];20-21,458-457[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	ACUGGUACUGAUCAAAGUAGAU&UUCUAUUUUGAUCGG-AUCAAA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN362_c0_g2_469_TPlot.pdf
TRINITY_DN362_c0_g2:470	si_a359	TRINITY_DN362_c0_g2	458	479	470	-29.20	-21.40	0.732876712328767	7	3-16,477-464;17-20,462-459	1-2,479-478[UP5];x-x,463-463[BULt];21-21,458-458[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	CUGGUACUGAUCAAAGUAGAUA&AUUCUAUUUUGAUCGG-AUCAA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN362_c0_g2_470_TPlot.pdf
TRINITY_DN36314_c0_g1:179	si_a149	TRINITY_DN36314_c0_g1	168	189	179	-29.40	-20.10	0.683673469387755	13.5	1-7,189-183;10-18,179-171	8-9,182-180[AILt];19-21,170-168[UP3]	...(((((((((...(((((((&)))))))-..)))))))))...	GGAGGCCUUGGAUUAGACGACG&CGUUGUU-GUUUUAAGGUCAAU	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN36314_c0_g1_179_TPlot.pdf
TRINITY_DN36314_c0_g1:180	si_a148	TRINITY_DN36314_c0_g1	169	190	180	-30.30	-20.30	0.66996699669967	12.5	1-8,190-183;11-19,179-171	9-10,182-180[AILt];20-21,170-169[UP3]	..(((((((((...((((((((&))))))))-..)))))))))..	GAGGCCUUGGAUUAGACGACGG&UCGUUGUU-GUUUUAAGGUCAA	3	0.999979807954259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN36314_c0_g1_180_TPlot.pdf
TRINITY_DN36314_c0_g1:181	si_a147	TRINITY_DN36314_c0_g1	170	191	181	-30.40	-21.60	0.710526315789474	11.5	1-9,191-183;12-20,179-171	10-11,182-180[AILt];21-21,170-170[UP3]	.(((((((((...(((((((((&)))))))))-..))))))))).	AGGCCUUGGAUUAGACGACGGU&AUCGUUGUU-GUUUUAAGGUCA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN36314_c0_g1_181_TPlot.pdf
TRINITY_DN36314_c0_g1:183	si_a146	TRINITY_DN36314_c0_g1	171	192	183	-29.70	-21.30	0.717171717171717	11.5	2-10,191-183;13-21,179-171	1-1,192-192[UP5];11-12,182-180[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	GGCCUUGGAUUAGACGACGGUC&AAUCGUUGUU-GUUUUAAGGUC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN36314_c0_g1_183_TPlot.pdf
TRINITY_DN36314_c0_g1:184	si_a145	TRINITY_DN36314_c0_g1	172	193	184	-28.10	-19.00	0.676156583629893	12.5	3-11,191-183;14-21,179-172	1-2,193-192[UP5];12-13,182-180[AILt]	((((((((...(((((((((..&..)))))))))-..))))))))	GCCUUGGAUUAGACGACGGUCA&UAAUCGUUGUU-GUUUUAAGGU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN36314_c0_g1_184_TPlot.pdf
TRINITY_DN36314_c0_g1:228	si_a793	TRINITY_DN36314_c0_g1	211	237	228	-28.50	-18.60	0.652631578947368	19.5	2-10,236-228;11-20,221-212	1-1,237-237[UP5];x-x,227-222[BULt];21-21,211-211[UP3]	.((((((((((......(((((((((.&.)))))))))------)))))))))).	GUGGAUUGGGAGAAAUUGAUGGAGGAC&UUUUUCUAUU------UUCCAAUCCGA	3	0.999999326777845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN36314_c0_g1_228_TPlot.pdf
TRINITY_DN36314_c0_g1:229	si_a792	TRINITY_DN36314_c0_g1	212	238	229	-27.60	-18.40	0.666666666666667	20	3-11,236-228;12-21,221-212	1-2,238-237[UP5];x-x,227-222[BULt]	((((((((((......(((((((((..&..)))))))))------))))))))))	UGGAUUGGGAGAAAUUGAUGGAGGACU&AUUUUUCUAUU------UUCCAAUCCG	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN36314_c0_g1_229_TPlot.pdf
TRINITY_DN36314_c0_g1:388	si_a138	TRINITY_DN36314_c0_g1	376	397	388	-26.30	-21.20	0.806083650190114	4	1-13,397-385;14-21,383-376	x-x,384-384[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	AACAACGAGUGGUUGAUUACUA&UAGUAAUUAAUCG-UUGUUGUU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN36314_c0_g1_388_TPlot.pdf
TRINITY_DN36314_c0_g1:389	si_a137	TRINITY_DN36314_c0_g1	377	398	389	-26.50	-21.60	0.815094339622642	4	1-14,398-385;15-21,383-377	x-x,384-384[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	ACAACGAGUGGUUGAUUACUAU&AUAGUAAUUAAUCG-UUGUUGU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN36314_c0_g1_389_TPlot.pdf
TRINITY_DN36314_c0_g1:391	si_a135	TRINITY_DN36314_c0_g1	376	400	391	-25.70	-18.40	0.715953307392996	8	3-13,398-388;14-21,383-376	1-2,400-399[UP5];x-x,387-384[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	AACAACGAGUGGUUGAUUACUAUGC&CAAUAGUAAUUAA----UCGUUGUU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN36314_c0_g1_391_TPlot.pdf
TRINITY_DN36314_c0_g1:392	si_a134	TRINITY_DN36314_c0_g1	377	400	392	-28.20	-20.00	0.709219858156028	7	1-3,400-398;5-14,397-388;15-21,383-377	4-4,x-x[BULq];x-x,387-384[BULt]	(((((((....((((((((((-(((&))).))))))))))----)))))))	ACAACGAGUGGUUGAUUACUA-UGC&GCAAUAGUAAUUAA----UCGUUGU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN36314_c0_g1_392_TPlot.pdf
TRINITY_DN36314_c0_g1:393	si_a133	TRINITY_DN36314_c0_g1	378	401	393	-28.10	-18.80	0.669039145907473	7.5	2-4,400-398;6-15,397-388;16-21,383-378	1-1,401-401[UP5];5-5,x-x[BULq];x-x,387-384[BULt]	((((((....((((((((((-(((.&.))).))))))))))----))))))	CAACGAGUGGUUGAUUACUA-UGCA&AGCAAUAGUAAUUAA----UCGUUG	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN36314_c0_g1_393_TPlot.pdf
TRINITY_DN3631_c0_g1:1028	si_a129	TRINITY_DN3631_c0_g1	1017	1037	1028	-25.20	-16.80	0.666666666666667	10	2-14,1036-1024	1-1,1037-1037[UP5];15-21,1023-1017[UP3]	.......(((((((((((((.&.))))))))))))).......	UCCUUCCUACUGUUGCUGUAC&UUAUAGCAAUAGUAAUUAAUC	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN3631_c0_g1_1028_TPlot.pdf
TRINITY_DN3631_c0_g1:574	si_a73	TRINITY_DN3631_c0_g1	563	583	574	-21.90	-14.80	0.675799086757991	9.5	1-4,583-580;7-18,577-566	5-6,579-578[SIL];19-21,565-563[UP3]	...((((((((((((..((((&))))..))))))))))))...	UCAGAUGAAGAACAACCUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999439905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN3631_c0_g1_574_TPlot.pdf
TRINITY_DN36326_c0_g3:301	si_a794	TRINITY_DN36326_c0_g3	289	310	301	-28.60	-18.80	0.657342657342657	7.5	1-6,310-305;8-13,303-298;15-20,295-290	7-7,304-304[SIL];14-14,297-296[AILt];21-21,289-289[UP3]	.((((((..((((((.((((((&)))))).))))))-.)))))).	GUCGGGUAGGGGAAAGGGAAAA&UUUUCUAUUUUCC-AAUCCGAA	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN36326_c0_g3_301_TPlot.pdf
TRINITY_DN36326_c0_g3:302	si_a793	TRINITY_DN36326_c0_g3	290	311	302	-28.50	-19.50	0.684210526315789	6.5	1-7,311-305;9-14,303-298;16-21,295-290	8-8,304-304[SIL];15-15,297-296[AILt]	((((((..((((((.(((((((&))))))).))))))-.))))))	UCGGGUAGGGGAAAGGGAAAAA&UUUUUCUAUUUUCC-AAUCCGA	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN36326_c0_g3_302_TPlot.pdf
TRINITY_DN36326_c0_g3:306	si_s79	TRINITY_DN36326_c0_g3	295	318	306	-26.20	-18.70	0.713740458015267	11.5	1-8,318-311;9-20,307-296	x-x,310-308[BULt];21-21,295-295[UP3]	.((((((((((((...((((((((&))))))))---)))))))))))).	UAGGGGAAAGGGAAAAAGGAGAAG&UUUUUUCU---UUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN36326_c0_g3_306_TPlot.pdf
TRINITY_DN36326_c0_g3:308	si_s72	TRINITY_DN36326_c0_g3	297	317	308	-24.10	-19.40	0.804979253112033	5.5	1-4,317-314;6-21,312-297	5-5,313-313[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	GGGGAAAGGGAAAAAGGAGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN36326_c0_g3_308_TPlot.pdf
TRINITY_DN36326_c0_g3:311	si_s69	TRINITY_DN36326_c0_g3	300	320	311	-23.40	-17.90	0.764957264957265	7	3-7,318-314;9-21,312-300	1-2,320-319[UP5];8-8,313-313[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGGGAAAAAGGAGAAGGA&AACUUCUAUUUUUUUUCUUUC	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN36326_c0_g3_311_TPlot.pdf
TRINITY_DN36326_c0_g4:1472	si_a140	TRINITY_DN36326_c0_g4	1461	1481	1472	-25.20	-16.80	0.666666666666667	6	1-7,1481-1475;10-20,1472-1462	8-9,1474-1473[SIL];21-21,1461-1461[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	UAAAUAAUAACGUGUAAUUAC&GUAAUUAAUCGUUGUUGUUUU	2	0.99984729171278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN36326_c0_g4_1472_TPlot.pdf
TRINITY_DN3632_c0_g1:1992	si_a118	TRINITY_DN3632_c0_g1	1982	2001	1992	-30.70	-20.80	0.677524429967427	6	1-8,2001-1994;11-15,1991-1987;17-21,1986-1982	9-10,1993-1992[SIL];16-16,x-x[BULq]	(((((-(((((..((((((((&))))))))..))))).)))))	GUUGC-AUGAAUGAAGCUCGU&ACGAGCUUGUUUUAUAGCAAU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN3632_c0_g1_1992_TPlot.pdf
TRINITY_DN3632_c0_g1:2006	si_a77	TRINITY_DN3632_c0_g1	1995	2015	2006	-22.20	-14.50	0.653153153153153	10	3-16,2013-2000	1-2,2015-2014[UP5];17-21,1999-1995[UP3]	.....((((((((((((((..&..)))))))))))))).....	AGCUCGUGAUGAGAAACAAGC&AAUUGUUUUUCAUUAUUAAGA	2	0.999998510318831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3632_c0_g1_2006_TPlot.pdf
TRINITY_DN3632_c0_g1:2007	si_a76	TRINITY_DN3632_c0_g1	1996	2016	2007	-21.20	-14.50	0.683962264150943	11	4-17,2013-2000	1-3,2016-2014[UP5];18-21,1999-1996[UP3]	....((((((((((((((...&...))))))))))))))....	GCUCGUGAUGAGAAACAAGCG&AAAUUGUUUUUCAUUAUUAAG	4	0.999999971123102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3632_c0_g1_2007_TPlot.pdf
TRINITY_DN3632_c0_g1:2008	si_a75	TRINITY_DN3632_c0_g1	1997	2017	2008	-21.30	-14.50	0.68075117370892	12	5-18,2013-2000	1-4,2017-2014[UP5];19-21,1999-1997[UP3]	...((((((((((((((....&....))))))))))))))...	CUCGUGAUGAGAAACAAGCGA&CAAAUUGUUUUUCAUUAUUAA	2	0.999997639036914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN3632_c0_g1_2008_TPlot.pdf
TRINITY_DN36336_c0_g1:28	si_s109	TRINITY_DN36336_c0_g1	17	38	28	-26.50	-19.20	0.724528301886792	6	2-5,37-34;6-21,32-17	1-1,38-38[UP5];x-x,33-33[BULt]	((((((((((((((((.((((.&.))))-))))))))))))))))	UAUUUUUCUGUUUUCUAAGUCA&GGAUU-GGAAAAUAGAAAAAUA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN36336_c0_g1_28_TPlot.pdf
TRINITY_DN3634_c0_g1:1417	si_a628	TRINITY_DN3634_c0_g1	1406	1425	1417	-27.10	-17.70	0.653136531365314	6	1-7,1425-1419;9-12,1418-1415;14-21,1413-1406	8-8,x-x[BULq];13-13,1414-1414[SIL]	((((((((.((((-(((((((&))))))).)))).))))))))	AGAGGAAUGGACG-AAUACGU&GCGUAUUAUGUCGAUUUUUUU	4	0.999999993731687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN3634_c0_g1_1417_TPlot.pdf
TRINITY_DN3635_c0_g1:1642	si_a537	TRINITY_DN3635_c0_g1	1631	1650	1642	-36.20	-25.90	0.715469613259668	8	1-2,1650-1649;4-18,1648-1634	3-3,x-x[BULq];19-21,1633-1631[UP3]	...(((((((((((((((-((&)).)))))))))))))))...	UGUGGUUGGACUGGUCGC-CG&CGAGCGAUCGGUUCAAUCUAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a537_TRINITY_DN3635_c0_g1_1642_TPlot.pdf
TRINITY_DN3635_c0_g1:2675	si_s377	TRINITY_DN3635_c0_g1	2662	2684	2675	-44.10	-30.20	0.684807256235828	8	1-10,2684-2675;11-14,2672-2669;16-19,2667-2664	x-x,2674-2673[BULt];15-15,2668-2668[SIL];20-21,2663-2662[UP3]	..((((.((((..((((((((((&))))))))))--)))).))))..	CGGAGGAGGACAAACGCGAGCGG&UCGCUCGCGU--GUCCGCCUUAC	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN3635_c0_g1_2675_TPlot.pdf
TRINITY_DN3635_c0_g1:2676	si_s376	TRINITY_DN3635_c0_g1	2663	2685	2676	-42.50	-30.20	0.710588235294118	8.5	2-11,2684-2675;12-15,2672-2669;17-20,2667-2664	1-1,2685-2685[UP5];x-x,2674-2673[BULt];16-16,2668-2668[SIL];21-21,2663-2663[UP3]	.((((.((((..((((((((((.&.))))))))))--)))).)))).	GGAGGAGGACAAACGCGAGCGGC&AUCGCUCGCGU--GUCCGCCUUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN3635_c0_g1_2676_TPlot.pdf
TRINITY_DN3635_c0_g1:2702	si_s633	TRINITY_DN3635_c0_g1	2691	2711	2702	-37.90	-25.40	0.670184696569921	9	1-8,2711-2704;11-19,2701-2693	9-10,2703-2702[SIL];20-21,2692-2691[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	CAGGCGGACGCGGACGGGAAG&CUUUUCGUAGGCGUUUGCCCU	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN3635_c0_g1_2702_TPlot.pdf
TRINITY_DN3635_c0_g1:2703	si_s632	TRINITY_DN3635_c0_g1	2692	2712	2703	-38.20	-25.40	0.664921465968586	9	2-9,2711-2704;12-20,2701-2693	1-1,2712-2712[UP5];10-11,2703-2702[SIL];21-21,2692-2692[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	AGGCGGACGCGGACGGGAAGC&UCUUUUCGUAGGCGUUUGCCC	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN3635_c0_g1_2703_TPlot.pdf
TRINITY_DN3635_c0_g1:2704	si_s631	TRINITY_DN3635_c0_g1	2693	2713	2704	-36.00	-25.40	0.705555555555555	10	3-10,2711-2704;13-21,2701-2693	1-2,2713-2712[UP5];11-12,2703-2702[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	GGCGGACGCGGACGGGAAGCU&AUCUUUUCGUAGGCGUUUGCC	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN3635_c0_g1_2704_TPlot.pdf
TRINITY_DN3635_c0_g1:2707	si_s628	TRINITY_DN3635_c0_g1	2696	2716	2707	-35.40	-24.30	0.686440677966102	7	1-4,2716-2713;6-13,2711-2704;16-21,2701-2696	5-5,2712-2712[SIL];14-15,2703-2702[SIL]	((((((..((((((((.((((&)))).))))))))..))))))	GGACGCGGACGGGAAGCUCGC&GCGAUCUUUUCGUAGGCGUUU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN3635_c0_g1_2707_TPlot.pdf
TRINITY_DN3635_c0_g1:2708	si_s627	TRINITY_DN3635_c0_g1	2697	2717	2708	-36.10	-23.90	0.662049861495845	7.5	2-5,2716-2713;7-14,2711-2704;17-21,2701-2697	1-1,2717-2717[UP5];6-6,2712-2712[SIL];15-16,2703-2702[SIL]	(((((..((((((((.((((.&.)))).))))))))..)))))	GACGCGGACGGGAAGCUCGCG&AGCGAUCUUUUCGUAGGCGUU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN3635_c0_g1_2708_TPlot.pdf
TRINITY_DN3635_c0_g1:2873	si_a600	TRINITY_DN3635_c0_g1	2861	2882	2873	-29.70	-21.20	0.713804713804714	7.5	1-3,2882-2880;5-15,2878-2868;16-19,2866-2863	4-4,2879-2879[SIL];x-x,2867-2867[BULt];20-21,2862-2861[UP3]	..((((.(((((((((((.(((&))).)))))))))))-))))..	CAUGGACGUUGCGAAGGUGCUG&CAGAAUUUUCGCAAU-UCCAAU	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN3635_c0_g1_2873_TPlot.pdf
TRINITY_DN3635_c0_g1:2874	si_a599	TRINITY_DN3635_c0_g1	2862	2883	2874	-30.40	-21.40	0.703947368421053	7.5	2-4,2882-2880;6-16,2878-2868;17-20,2866-2863	1-1,2883-2883[UP5];5-5,2879-2879[SIL];x-x,2867-2867[BULt];21-21,2862-2862[UP3]	.((((.(((((((((((.(((.&.))).)))))))))))-)))).	AUGGACGUUGCGAAGGUGCUGG&ACAGAAUUUUCGCAAU-UCCAA	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN3635_c0_g1_2874_TPlot.pdf
TRINITY_DN3635_c0_g1:2875	si_a598	TRINITY_DN3635_c0_g1	2863	2884	2875	-32.30	-21.20	0.656346749226006	8.5	3-5,2882-2880;7-17,2878-2868;18-21,2866-2863	1-2,2884-2883[UP5];6-6,2879-2879[SIL];x-x,2867-2867[BULt]	((((.(((((((((((.(((..&..))).)))))))))))-))))	UGGACGUUGCGAAGGUGCUGGA&GACAGAAUUUUCGCAAU-UCCA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN3635_c0_g1_2875_TPlot.pdf
TRINITY_DN3635_c0_g1:2879	si_s798	TRINITY_DN3635_c0_g1	2868	2890	2879	-29.30	-19.40	0.662116040955631	11.5	2-9,2889-2882;10-18,2879-2871;20-21,2869-2868	1-1,2890-2890[UP5];x-x,2881-2880[BULt];19-19,2870-2870[SIL]	((.(((((((((..((((((((.&.))))))))--))))))))).))	GUUGCGAAGGUGCUGGAUGCGAA&CUCGUAUUU--UAUCUUCGUUAC	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN3635_c0_g1_2879_TPlot.pdf
TRINITY_DN3635_c0_g1:660	si_s635	TRINITY_DN3635_c0_g1	648	669	660	-39.80	-27.30	0.685929648241206	5	1-6,669-664;8-15,662-655;17-21,652-648	7-7,663-663[SIL];16-16,654-653[AILt]	(((((..((((((((.((((((&)))))).))))))))-.)))))	CGAGGCUCGGACGCCGACGAAA&UUUCGUAGGCGUUUG-CCCUCG	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN3635_c0_g1_660_TPlot.pdf
TRINITY_DN3635_c0_g1:725	si_s629	TRINITY_DN3635_c0_g1	714	733	725	-34.60	-24.00	0.69364161849711	7	1-3,733-731;5-8,730-727;10-21,725-714	4-4,x-x[BULq];9-9,726-726[SIL]	((((((((((((.((((-(((&))).)))).))))))))))))	CAAGCGCUUGCGCAGAG-UCG&CGAUCUUUUCGUAGGCGUUUG	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3635_c0_g1_725_TPlot.pdf
TRINITY_DN3636_c0_g1:3819	si_a676	TRINITY_DN3636_c0_g1	3808	3828	3819	-34.00	-22.30	0.655882352941176	12	6-8,3823-3821;10-21,3819-3808	1-5,3828-3824[UP5];9-9,3820-3820[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GAGGCCGCGUGAUUAACAGUC&AUUCCUUAUUCACGCGGUUUC	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN3636_c0_g1_3819_TPlot.pdf
TRINITY_DN3636_c0_g1:4536	si_s538	TRINITY_DN3636_c0_g1	4525	4545	4536	-28.00	-18.70	0.667857142857143	5	2-14,4544-4532;16-17,4530-4529;19-21,4527-4525	1-1,4545-4545[UP5];15-15,4531-4531[SIL];18-18,4528-4528[SIL]	(((.((.(((((((((((((.&.))))))))))))).)).)))	CUAAUUCGAUCGGAUUAAGAU&UUUUUGAUCCGAUCAAAAUAG	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN3636_c0_g1_4536_TPlot.pdf
TRINITY_DN3636_c0_g1:4540	si_s534	TRINITY_DN3636_c0_g1	4529	4554	4540	-28.80	-19.60	0.680555555555556	16	1-6,4554-4549;7-18,4543-4532	x-x,4548-4544[BULt];19-21,4531-4529[UP3]	...((((((((((((.....((((((&))))))-----))))))))))))...	UUCGAUCGGAUUAAGAUCGGGAUGAU&AUCAUU-----UUUGAUCCGAUCAAA	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN3636_c0_g1_4540_TPlot.pdf
TRINITY_DN3636_c0_g1:5300	si_a405	TRINITY_DN3636_c0_g1	5289	5309	5300	-19.80	-12.90	0.651515151515151	8.5	1-15,5309-5295	16-21,5294-5289[UP3]	......(((((((((((((((&)))))))))))))))......	AUUAACAUGAACAGAAUAAUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3636_c0_g1_5300_TPlot.pdf
TRINITY_DN3636_c0_g1:5301	si_a404	TRINITY_DN3636_c0_g1	5290	5310	5301	-21.70	-16.30	0.751152073732719	7.5	1-16,5310-5295	17-21,5294-5290[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUAACAUGAACAGAAUAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3636_c0_g1_5301_TPlot.pdf
TRINITY_DN3636_c0_g1:5302	si_a403	TRINITY_DN3636_c0_g1	5291	5311	5302	-22.00	-17.40	0.790909090909091	6.5	1-17,5311-5295	18-21,5294-5291[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAACAUGAACAGAAUAAUUCU&AGAAUUGUUUUGUUUAUAUUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3636_c0_g1_5302_TPlot.pdf
TRINITY_DN3636_c0_g1:5303	si_a402	TRINITY_DN3636_c0_g1	5292	5312	5303	-22.40	-17.40	0.776785714285714	6.5	2-18,5311-5295	1-1,5312-5312[UP5];19-21,5294-5292[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AACAUGAACAGAAUAAUUCUU&UAGAAUUGUUUUGUUUAUAUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN3636_c0_g1_5303_TPlot.pdf
TRINITY_DN3636_c0_g1:5305	si_a400	TRINITY_DN3636_c0_g1	5294	5314	5305	-22.80	-17.40	0.763157894736842	8	4-20,5311-5295	1-3,5314-5312[UP5];21-21,5294-5294[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAUGAACAGAAUAAUUCUUUU&UAUAGAAUUGUUUUGUUUAUA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN3636_c0_g1_5305_TPlot.pdf
TRINITY_DN3636_c0_g1:5307	si_a398	TRINITY_DN3636_c0_g1	5296	5316	5307	-22.40	-16.10	0.71875	11	6-21,5311-5296	1-5,5316-5312[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAACAGAAUAAUUCUUUUUA&AAUAUAGAAUUGUUUUGUUUA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3636_c0_g1_5307_TPlot.pdf
TRINITY_DN3636_c0_g1:5377	si_a86	TRINITY_DN3636_c0_g1	5366	5386	5377	-26.60	-17.70	0.665413533834586	7	1-16,5386-5371;18-19,5369-5368	17-17,5370-5370[SIL];20-21,5367-5366[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	AAUGGUUUUUCUUGGUGAUGA&UCAUUAUUAAGAAAAGGUAAC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN3636_c0_g1_5377_TPlot.pdf
TRINITY_DN3636_c0_g1:5378	si_a85	TRINITY_DN3636_c0_g1	5367	5387	5378	-25.00	-18.60	0.744	6	1-17,5387-5371;19-20,5369-5368	18-18,5370-5370[SIL];21-21,5367-5367[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	AUGGUUUUUCUUGGUGAUGAA&UUCAUUAUUAAGAAAAGGUAA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN3636_c0_g1_5378_TPlot.pdf
TRINITY_DN3636_c0_g1:5380	si_a83	TRINITY_DN3636_c0_g1	5369	5389	5380	-24.50	-18.90	0.771428571428571	5	1-19,5389-5371;21-21,5369-5369	20-20,5370-5370[SIL]	(.(((((((((((((((((((&))))))))))))))))))).)	GGUUUUUCUUGGUGAUGAAAA&UUUUCAUUAUUAAGAAAAGGU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN3636_c0_g1_5380_TPlot.pdf
TRINITY_DN3636_c0_g1:5381	si_a82	TRINITY_DN3636_c0_g1	5370	5390	5381	-23.70	-18.70	0.789029535864979	5.5	2-20,5389-5371	1-1,5390-5390[UP5];21-21,5370-5370[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	GUUUUUCUUGGUGAUGAAAAU&UUUUUCAUUAUUAAGAAAAGG	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN3636_c0_g1_5381_TPlot.pdf
TRINITY_DN3636_c0_g1:5384	si_a79	TRINITY_DN3636_c0_g1	5373	5393	5384	-22.20	-17.10	0.77027027027027	9	5-21,5389-5373	1-4,5393-5390[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUCUUGGUGAUGAAAAUUCC&UUGUUUUUCAUUAUUAAGAAA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN3636_c0_g1_5384_TPlot.pdf
TRINITY_DN3636_c0_g1:5385	si_a78	TRINITY_DN3636_c0_g1	5374	5394	5385	-22.30	-16.20	0.726457399103139	10.5	6-21,5389-5374	1-5,5394-5390[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUCUUGGUGAUGAAAAUUCCG&AUUGUUUUUCAUUAUUAAGAA	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN3636_c0_g1_5385_TPlot.pdf
TRINITY_DN3636_c2_g1:1068	si_s69	TRINITY_DN3636_c2_g1	1057	1078	1068	-23.40	-16.60	0.70940170940171	8	3-5,1076-1074;6-8,1072-1070;10-21,1068-1057	1-2,1078-1077[UP5];x-x,1073-1073[BULt];9-9,1069-1069[SIL]	((((((((((((.(((.(((..&..)))-))).))))))))))))	GAAAGAGAGAAAUUAGUAAGGU&AACUU-CUAUUUUUUUUCUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3636_c2_g1_1068_TPlot.pdf
TRINITY_DN3636_c2_g1:3366	si_s809	TRINITY_DN3636_c2_g1	3355	3376	3366	-28.50	-19.10	0.670175438596491	10.5	1-5,3376-3372;7-18,3369-3358	6-6,3371-3370[AILt];19-21,3357-3355[UP3]	...((((((((((((..(((((&)))))-.))))))))))))...	AGAAAGAAGGGGUGGUAGAAGA&UCUUC-GUUACCUUUUCUUAAU	4	0.99999997500826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3636_c2_g1_3366_TPlot.pdf
TRINITY_DN3636_c2_g1:387	si_a19	TRINITY_DN3636_c2_g1	372	396	387	-27.00	-17.70	0.655555555555556	13	3-10,394-387;11-21,382-372	1-2,396-395[UP5];x-x,386-383[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	AGAACUGGAAAACAUUAAAUGGGAU&AGCCUAUUUA----UUUUUAGUUCU	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN3636_c2_g1_387_TPlot.pdf
TRINITY_DN3636_c2_g1:659	si_s797	TRINITY_DN3636_c2_g1	648	667	659	-30.00	-19.70	0.656666666666667	6	1-4,667-664;6-14,663-655;16-20,653-649	5-5,x-x[BULq];15-15,654-654[SIL];21-21,648-648[UP3]	.(((((.(((((((((-((((&)))).))))))))).))))).	AGAUGAUGAUGAAAUA-GAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.99999999216637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3636_c2_g1_659_TPlot.pdf
TRINITY_DN3636_c2_g1:790	si_s524	TRINITY_DN3636_c2_g1	779	799	790	-23.90	-15.90	0.665271966527197	7	1-13,799-787;15-20,785-780	14-14,786-786[SIL];21-21,779-779[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	ACAGAGGCGAUUUUGGGUUAG&UUAAUUCGAAAUCAUUUUUGA	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN3636_c2_g1_790_TPlot.pdf
TRINITY_DN3636_c2_g1:791	si_s523	TRINITY_DN3636_c2_g1	780	800	791	-24.50	-19.00	0.775510204081633	6.5	1-14,800-787;16-21,785-780	15-15,786-786[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	CAGAGGCGAUUUUGGGUUAGG&CUUAAUUCGAAAUCAUUUUUG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN3636_c2_g1_791_TPlot.pdf
TRINITY_DN3636_c2_g1:792	si_s522	TRINITY_DN3636_c2_g1	781	801	792	-23.80	-17.50	0.735294117647059	6.5	1-15,801-787;17-21,785-781	16-16,786-786[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AGAGGCGAUUUUGGGUUAGGA&UCUUAAUUCGAAAUCAUUUUU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN3636_c2_g1_792_TPlot.pdf
TRINITY_DN3636_c2_g1:797	si_s517	TRINITY_DN3636_c2_g1	786	806	797	-24.80	-17.30	0.69758064516129	11	5-20,802-787	1-4,806-803[UP5];21-21,786-786[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAUUUUGGGUUAGGAAACAU&UAUAUUCUUAAUUCGAAAUCA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s517_TRINITY_DN3636_c2_g1_797_TPlot.pdf
TRINITY_DN3636_c2_g1:906	si_a315	TRINITY_DN3636_c2_g1	892	915	906	-27.00	-18.70	0.692592592592593	8	1-7,915-909;9-14,907-902;15-21,898-892	8-8,908-908[SIL];x-x,901-899[BULt]	(((((((...((((((.(((((((&))))))).))))))---)))))))	AGAAGAUGGACAUGGAAGAGUCCA&UGGAUUUAUCCAUG---AUUUUUU	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN3636_c2_g1_906_TPlot.pdf
TRINITY_DN3636_c2_g1:907	si_a314	TRINITY_DN3636_c2_g1	893	916	907	-27.10	-18.10	0.66789667896679	9	2-8,915-909;10-15,907-902;16-21,898-893	1-1,916-916[UP5];9-9,908-908[SIL];x-x,901-899[BULt]	((((((...((((((.(((((((.&.))))))).))))))---))))))	GAAGAUGGACAUGGAAGAGUCCAG&UUGGAUUUAUCCAUG---AUUUUU	4	0.999996071852019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3636_c2_g1_907_TPlot.pdf
TRINITY_DN3638_c0_g1:130	si_a66	TRINITY_DN3638_c0_g1	119	139	130	-26.70	-19.50	0.730337078651685	6.5	2-13,138-127;15-19,125-121	1-1,139-139[UP5];14-14,126-126[SIL];20-21,120-119[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	UUGGACGCUUUGAAAGAGGCU&CGCUUCUUUCAAAUUGUUUUU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3638_c0_g1_130_TPlot.pdf
TRINITY_DN3638_c0_g1:1580	si_s68	TRINITY_DN3638_c0_g1	1569	1589	1580	-23.10	-16.20	0.701298701298701	12	4-18,1586-1572	1-3,1589-1587[UP5];19-21,1571-1569[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAUGGAAGAGAGUGGAAGCGC&CAACUUCUAUUUUUUUUCUUU	4	0.99999999999152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3638_c0_g1_1580_TPlot.pdf
TRINITY_DN3638_c0_g1:1581	si_s67	TRINITY_DN3638_c0_g1	1570	1589	1581	-25.60	-17.20	0.671875	9.5	1-2,1589-1588;5-19,1586-1572	3-4,1587-1587[AILq];20-21,1571-1570[UP3]	..(((((((((((((((.-((&))..)))))))))))))))..	AUGGAAGAGAGUGGAAGC-GC&GCAACUUCUAUUUUUUUUCUU	2	0.999999071691847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3638_c0_g1_1581_TPlot.pdf
TRINITY_DN3638_c0_g1:1583	si_s65	TRINITY_DN3638_c0_g1	1572	1591	1583	-26.00	-19.00	0.730769230769231	7.5	1-4,1591-1588;7-21,1586-1572	5-6,1587-1587[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	GGAAGAGAGUGGAAGC-GCUG&UAGCAACUUCUAUUUUUUUUC	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN3638_c0_g1_1583_TPlot.pdf
TRINITY_DN3638_c0_g1:1584	si_s64	TRINITY_DN3638_c0_g1	1573	1592	1584	-24.10	-16.90	0.701244813278008	9	2-5,1591-1588;8-21,1586-1573	1-1,1592-1592[UP5];6-7,1587-1587[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	GAAGAGAGUGGAAGC-GCUGU&UUAGCAACUUCUAUUUUUUUU	2	0.998651692302393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3638_c0_g1_1584_TPlot.pdf
TRINITY_DN3638_c0_g1:348	si_a156	TRINITY_DN3638_c0_g1	337	360	348	-28.90	-19.42	0.6719723183391	13.5	1-5,360-356;8-20,350-338	6-7,355-351[AILt];21-21,337-337[UP3]	.(((((((((((((.....(((((&)))))---..))))))))))))).	GGGGUGGAUUGACUGUGCGAAAAC&GUUUU---AAGGUCAAUCUAUUCA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a156_TRINITY_DN3638_c0_g1_348_TPlot.pdf
TRINITY_DN3639_c0_g1:1490	si_s130	TRINITY_DN3639_c0_g1	1475	1499	1490	-28.70	-20.40	0.710801393728223	13.5	1-10,1499-1490;11-17,1485-1479	x-x,1489-1486[BULt];18-21,1478-1475[UP3]	....(((((((....((((((((((&))))))))))----)))))))....	UAUGGGUUGGUACAAUCAACUCUUC&GAAGAGUUGA----AUCAAUCAAAA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN3639_c0_g1_1490_TPlot.pdf
TRINITY_DN3639_c0_g1:2016	si_s355	TRINITY_DN3639_c0_g1	2004	2026	2016	-28.10	-18.50	0.658362989323843	11	5-8,2022-2019;9-19,2017-2007;20-21,2005-2004	1-4,2026-2023[UP5];x-x,2018-2018[BULt];x-x,2006-2006[BULt]	((.(((((((((((.((((....&....))))-)))))))))))-))	CGUGUUCAAUCUGUCUUCUGUAU&AUAAAGAA-AUAGAUUGAAC-CG	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s355_TRINITY_DN3639_c0_g1_2016_TPlot.pdf
TRINITY_DN3639_c0_g1:2205	si_a737	TRINITY_DN3639_c0_g1	2193	2216	2205	-38.60	-28.00	0.725388601036269	6	1-3,2216-2214;4-8,2212-2208;9-13,2206-2202;14-20,2200-2194	x-x,2213-2213[BULt];x-x,2207-2207[BULt];x-x,2201-2201[BULt];21-21,2193-2193[UP3]	.(((((((.(((((.(((((.(((&)))-)))))-)))))-))))))).	CUCAUGGCACAGGGUGUAAACGAU&AUC-UUUAC-CCCUG-GCCAUGAA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a737_TRINITY_DN3639_c0_g1_2205_TPlot.pdf
TRINITY_DN3639_c0_g1:2206	si_a736	TRINITY_DN3639_c0_g1	2194	2217	2206	-40.20	-27.70	0.689054726368159	6	2-4,2216-2214;5-9,2212-2208;10-14,2206-2202;15-21,2200-2194	1-1,2217-2217[UP5];x-x,2213-2213[BULt];x-x,2207-2207[BULt];x-x,2201-2201[BULt]	(((((((.(((((.(((((.(((.&.)))-)))))-)))))-)))))))	UCAUGGCACAGGGUGUAAACGAUA&CAUC-UUUAC-CCCUG-GCCAUGA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN3639_c0_g1_2206_TPlot.pdf
TRINITY_DN363_c0_g1:1665	si_s81	TRINITY_DN363_c0_g1	1652	1674	1665	-28.90	-18.80	0.650519031141869	8	2-11,1673-1664;13-18,1661-1656;19-21,1654-1652	1-1,1674-1674[UP5];12-12,1663-1662[AILt];x-x,1655-1655[BULt]	(((.((((((..((((((((((.&.))))))))))-.))))))-)))	AGGCAGAAGGCCAGGAAAGAGAU&UUUUCUUUCCU-UUCUUCU-UCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN363_c0_g1_1665_TPlot.pdf
TRINITY_DN363_c0_g1:1668	si_s78	TRINITY_DN363_c0_g1	1656	1677	1668	-26.20	-17.60	0.67175572519084	10.5	5-14,1673-1664;16-21,1661-1656	1-4,1677-1674[UP5];15-15,1663-1662[AILt]	((((((..((((((((((....&....))))))))))-.))))))	AGAAGGCCAGGAAAGAGAUGAU&UUUUUUUCUUUCCU-UUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN363_c0_g1_1668_TPlot.pdf
TRINITY_DN363_c0_g1:1792	si_s88	TRINITY_DN363_c0_g1	1780	1800	1792	-34.80	-23.40	0.672413793103448	6	1-5,1800-1796;7-17,1795-1785;18-19,1783-1782	6-6,x-x[BULq];x-x,1784-1784[BULt];20-21,1781-1780[UP3]	..((.(((((((((((-(((((&))))).)))))))))))-))..	UCAGACGAAGAAGAAG-GAGGA&UCCUUUCUUCUUCUUCG-CUUC	2	0.99999999276185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN363_c0_g1_1792_TPlot.pdf
TRINITY_DN363_c0_g1:1793	si_s87	TRINITY_DN363_c0_g1	1781	1801	1793	-32.90	-23.80	0.723404255319149	5.5	1-6,1801-1796;8-18,1795-1785;19-20,1783-1782	7-7,x-x[BULq];x-x,1784-1784[BULt];21-21,1781-1781[UP3]	.((.(((((((((((-((((((&)))))).)))))))))))-)).	CAGACGAAGAAGAAG-GAGGAG&UUCCUUUCUUCUUCUUCG-CUU	2	0.999882415131671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN363_c0_g1_1793_TPlot.pdf
TRINITY_DN363_c0_g1:1794	si_s86	TRINITY_DN363_c0_g1	1782	1802	1794	-32.90	-23.90	0.726443768996961	6	2-7,1801-1796;9-19,1795-1785;20-21,1783-1782	1-1,1802-1802[UP5];8-8,x-x[BULq];x-x,1784-1784[BULt]	((.(((((((((((-((((((.&.)))))).)))))))))))-))	AGACGAAGAAGAAG-GAGGAGC&UUUCCUUUCUUCUUCUUCG-CU	4	0.999997290929464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN363_c0_g1_1794_TPlot.pdf
TRINITY_DN363_c0_g1:1795	si_s85	TRINITY_DN363_c0_g1	1784	1809	1795	-33.80	-25.80	0.763313609467456	14	1-7,1809-1803;8-20,1797-1785	x-x,1802-1798[BULt];21-21,1784-1784[UP3]	.(((((((((((((.....(((((((&)))))))-----))))))))))))).	ACGAAGAAGAAGGAGGAGCAGGAGGG&CUUUCCU-----UUCUUCUUCUUCGC	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN363_c0_g1_1795_TPlot.pdf
TRINITY_DN363_c0_g1:1796	si_s84	TRINITY_DN363_c0_g1	1785	1810	1796	-32.30	-25.90	0.801857585139319	14	2-8,1809-1803;9-21,1797-1785	1-1,1810-1810[UP5];x-x,1802-1798[BULt]	(((((((((((((.....(((((((.&.)))))))-----)))))))))))))	CGAAGAAGAAGGAGGAGCAGGAGGGG&UCUUUCCU-----UUCUUCUUCUUCG	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN363_c0_g1_1796_TPlot.pdf
TRINITY_DN363_c0_g1:1797	si_s89	TRINITY_DN363_c0_g1	1785	1808	1797	-35.30	-23.60	0.668555240793201	10	1-5,1808-1804;6-15,1801-1792;17-21,1789-1785	x-x,1803-1802[BULt];16-16,1791-1790[AILt]	(((((..((((((((((..(((((&)))))--))))))))))-.)))))	CGAAGAAGAAGGAGGAGCAGGAGG&CCUUU--CUUCUUCUUC-GCUUCG	4	0.999999999999904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN363_c0_g1_1797_TPlot.pdf
TRINITY_DN363_c0_g1:1800	si_s83	TRINITY_DN363_c0_g1	1789	1811	1800	-30.90	-25.50	0.825242718446602	8.5	1-9,1811-1803;10-21,1800-1789	x-x,1802-1801[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	GAAGAAGGAGGAGCAGGAGGGGA&UUCUUUCCU--UUCUUCUUCUUC	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN363_c0_g1_1800_TPlot.pdf
TRINITY_DN363_c0_g1:1801	si_s78	TRINITY_DN363_c0_g1	1788	1811	1801	-26.20	-17.80	0.679389312977099	10.5	1-9,1811-1803;10-15,1801-1796;16-21,1793-1788	x-x,1802-1802[BULt];x-x,1795-1794[BULt]	((((((..((((((.(((((((((&)))))))))-))))))--))))))	AGAAGAAGGAGGAGCAGGAGGGGA&UUUUUUUCU-UUCCUU--UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN363_c0_g1_1801_TPlot.pdf
TRINITY_DN363_c0_g1:1803	si_s82	TRINITY_DN363_c0_g1	1790	1812	1803	-28.90	-22.50	0.778546712802768	9.5	2-10,1811-1803;11-21,1800-1790	1-1,1812-1812[UP5];x-x,1802-1801[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	AAGAAGGAGGAGCAGGAGGGGAU&UUUCUUUCCU--UUCUUCUUCUU	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN363_c0_g1_1803_TPlot.pdf
TRINITY_DN363_c0_g1:1804	si_s81	TRINITY_DN363_c0_g1	1791	1813	1804	-28.90	-21.60	0.747404844290658	11	3-11,1811-1803;12-21,1800-1791	1-2,1813-1812[UP5];x-x,1802-1801[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	AGAAGGAGGAGCAGGAGGGGAUC&UUUUCUUUCCU--UUCUUCUUCU	3	0.9999999945586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN363_c0_g1_1804_TPlot.pdf
TRINITY_DN363_c0_g1:1829	si_s72	TRINITY_DN363_c0_g1	1818	1838	1829	-24.10	-15.80	0.655601659751037	6	1-4,1838-1835;6-18,1833-1821	5-5,1834-1834[SIL];19-21,1820-1818[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UAAGAAAGAAAAGAAAGAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN363_c0_g1_1829_TPlot.pdf
TRINITY_DN363_c0_g1:1830	si_s76	TRINITY_DN363_c0_g1	1819	1839	1830	-23.60	-17.10	0.724576271186441	4	2-13,1838-1827;15-21,1825-1819	1-1,1839-1839[UP5];14-14,1826-1826[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGAAAGAAAAGAAAGAGAAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN363_c0_g1_1830_TPlot.pdf
TRINITY_DN363_c0_g1:1831	si_s75	TRINITY_DN363_c0_g1	1820	1840	1831	-24.00	-16.40	0.683333333333333	6	3-14,1838-1827;16-21,1825-1820	1-2,1840-1839[UP5];15-15,1826-1826[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGAAAGAAAAGAAAGAGAAAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN363_c0_g1_1831_TPlot.pdf
TRINITY_DN363_c0_g1:2062	si_s76	TRINITY_DN363_c0_g1	2051	2071	2062	-23.60	-15.60	0.661016949152542	9.5	4-15,2068-2057;17-19,2055-2053	1-3,2071-2069[UP5];16-16,2056-2056[SIL];20-21,2052-2051[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	CCGAAUGGGAAGAAAAAGUAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN363_c0_g1_2062_TPlot.pdf
TRINITY_DN363_c0_g1:2098	si_a787	TRINITY_DN363_c0_g1	2086	2107	2098	-26.30	-17.38	0.660836501901141	9	1-13,2107-2095;19-20,2088-2087	14-18,2094-2089[AILt];21-21,2086-2086[UP3]	.((......(((((((((((((&)))))))))))))-.....)).	AGGUACGAGAGAGAAAUGGAAG&CUUCUAUUUUUCU-AUUUUCCA	2	0.999999999601715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN363_c0_g1_2098_TPlot.pdf
TRINITY_DN363_c0_g1:2099	si_a786	TRINITY_DN363_c0_g1	2087	2108	2099	-26.60	-18.48	0.694736842105263	8	1-14,2108-2095;20-21,2088-2087	15-19,2094-2089[AILt]	((......((((((((((((((&))))))))))))))-.....))	GGUACGAGAGAGAAAUGGAAGA&UCUUCUAUUUUUCU-AUUUUCC	2	0.999978893272731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN363_c0_g1_2099_TPlot.pdf
TRINITY_DN363_c0_g1:2100	si_a785	TRINITY_DN363_c0_g1	2089	2109	2100	-25.90	-17.20	0.664092664092664	9	2-15,2108-2095	1-1,2109-2109[UP5];16-21,2094-2089[UP3]	......((((((((((((((.&.))))))))))))))......	UACGAGAGAGAAAUGGAAGAA&CUCUUCUAUUUUUCUAUUUUC	2	0.999999999981358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN363_c0_g1_2100_TPlot.pdf
TRINITY_DN363_c0_g1:2101	si_a784	TRINITY_DN363_c0_g1	2090	2110	2101	-24.70	-17.20	0.696356275303644	9.5	3-16,2108-2095	1-2,2110-2109[UP5];17-21,2094-2090[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACGAGAGAGAAAUGGAAGAAU&ACUCUUCUAUUUUUCUAUUUU	2	0.999998204552403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN363_c0_g1_2101_TPlot.pdf
TRINITY_DN363_c0_g1:2102	si_a783	TRINITY_DN363_c0_g1	2091	2111	2102	-24.70	-17.20	0.696356275303644	10.5	4-17,2108-2095	1-3,2111-2109[UP5];18-21,2094-2091[UP3]	....((((((((((((((...&...))))))))))))))....	CGAGAGAGAAAUGGAAGAAUA&AACUCUUCUAUUUUUCUAUUU	2	0.999991491863399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN363_c0_g1_2102_TPlot.pdf
TRINITY_DN363_c0_g1:2103	si_a782	TRINITY_DN363_c0_g1	2092	2112	2103	-26.40	-17.20	0.651515151515151	11.5	5-18,2108-2095	1-4,2112-2109[UP5];19-21,2094-2092[UP3]	...((((((((((((((....&....))))))))))))))...	GAGAGAGAAAUGGAAGAAUAC&CAACUCUUCUAUUUUUCUAUU	3	0.999999999978345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN363_c0_g1_2103_TPlot.pdf
TRINITY_DN363_c0_g1:2317	si_s812	TRINITY_DN363_c0_g1	2306	2327	2317	-26.40	-18.00	0.681818181818182	9	1-6,2327-2322;7-15,2320-2312	x-x,2321-2321[BULt];16-21,2311-2306[UP3]	......(((((((((.((((((&))))))-)))))))))......	UUAAGGAAGAAAAGGAUGACGA&UCGUUA-CCUUUUCUUAAUAAU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN363_c0_g1_2317_TPlot.pdf
TRINITY_DN363_c0_g1:2318	si_s811	TRINITY_DN363_c0_g1	2307	2328	2318	-26.40	-18.90	0.715909090909091	8	1-7,2328-2322;8-16,2320-2312	x-x,2321-2321[BULt];17-21,2311-2307[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	UAAGGAAGAAAAGGAUGACGAA&UUCGUUA-CCUUUUCUUAAUAA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN363_c0_g1_2318_TPlot.pdf
TRINITY_DN363_c0_g1:2319	si_s810	TRINITY_DN363_c0_g1	2308	2329	2319	-27.90	-19.10	0.684587813620072	8	2-8,2328-2322;9-17,2320-2312	1-1,2329-2329[UP5];x-x,2321-2321[BULt];18-21,2311-2308[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	AAGGAAGAAAAGGAUGACGAAA&CUUCGUUA-CCUUUUCUUAAUA	3	0.999978543656523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN363_c0_g1_2319_TPlot.pdf
TRINITY_DN363_c0_g1:2322	si_s808	TRINITY_DN363_c0_g1	2310	2331	2322	-28.60	-19.10	0.667832167832168	10	4-10,2328-2322;11-19,2320-2312	1-3,2331-2329[UP5];x-x,2321-2321[BULt];20-21,2311-2310[UP3]	..(((((((((.(((((((...&...)))))))-)))))))))..	GGAAGAAAAGGAUGACGAAAAG&AUCUUCGUUA-CCUUUUCUUAA	2	0.999998651499917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN363_c0_g1_2322_TPlot.pdf
TRINITY_DN363_c0_g1:2324	si_s806	TRINITY_DN363_c0_g1	2312	2333	2324	-28.60	-18.70	0.653846153846154	12	6-12,2328-2322;13-21,2320-2312	1-5,2333-2329[UP5];x-x,2321-2321[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	AAGAAAAGGAUGACGAAAAGAA&UUAUCUUCGUUA-CCUUUUCUU	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN363_c0_g1_2324_TPlot.pdf
TRINITY_DN363_c0_g1:2444	si_a142	TRINITY_DN363_c0_g1	2433	2453	2444	-23.50	-15.70	0.668085106382979	15	6-17,2448-2437	1-5,2453-2449[UP5];18-21,2436-2433[UP3]	....((((((((((((.....&.....))))))))))))....	UAAUGACGACGACGAUGAUGA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN363_c0_g1_2444_TPlot.pdf
TRINITY_DN363_c0_g1:2463	si_s86	TRINITY_DN363_c0_g1	2452	2473	2463	-32.90	-22.50	0.683890577507599	8.5	2-8,2472-2466;9-19,2464-2454	1-1,2473-2473[UP5];x-x,2465-2465[BULt];20-21,2453-2452[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	GAUGAAGAAGGAGAAGAGGAGG&UUUCCUUU-CUUCUUCUUCGCU	2	0.999999999336545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN363_c0_g1_2463_TPlot.pdf
TRINITY_DN363_c0_g1:2464	si_s85	TRINITY_DN363_c0_g1	2453	2475	2464	-33.80	-23.00	0.680473372781065	8.5	1-3,2475-2473;4-9,2471-2466;10-20,2464-2454	x-x,2472-2472[BULt];x-x,2465-2465[BULt];21-21,2453-2453[UP3]	.(((((((((((.((((((.(((&)))-))))))-))))))))))).	AUGAAGAAGGAGAAGAGGAGGAG&CUU-UCCUUU-CUUCUUCUUCGC	2	0.999999973258643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN363_c0_g1_2464_TPlot.pdf
TRINITY_DN363_c0_g1:2465	si_s84	TRINITY_DN363_c0_g1	2454	2474	2465	-32.30	-24.00	0.743034055727554	6.5	1-6,2474-2469;8-20,2467-2455	7-7,2468-2468[SIL];21-21,2454-2454[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UGAAGAAGGAGAAGAGGAGGA&UCUUUCCUUUCUUCUUCUUCG	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN363_c0_g1_2465_TPlot.pdf
TRINITY_DN363_c0_g1:2468	si_s82	TRINITY_DN363_c0_g1	2456	2478	2468	-28.90	-21.90	0.757785467128028	7.5	1-6,2478-2473;7-12,2471-2466;13-21,2464-2456	x-x,2472-2472[BULt];x-x,2465-2465[BULt]	(((((((((.((((((.((((((&))))))-))))))-)))))))))	AAGAAGGAGAAGAGGAGGAGGAA&UUUCUU-UCCUUU-CUUCUUCUU	3	0.999999945301483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN363_c0_g1_2468_TPlot.pdf
TRINITY_DN363_c0_g1:2469	si_s83	TRINITY_DN363_c0_g1	2458	2478	2469	-30.90	-24.00	0.776699029126214	6.5	1-7,2478-2472;9-21,2470-2458	8-8,2471-2471[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAAGGAGAAGAGGAGGAGGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN363_c0_g1_2469_TPlot.pdf
TRINITY_DN363_c0_g1:2470	si_s809	TRINITY_DN363_c0_g1	2459	2480	2470	-28.50	-19.20	0.673684210526316	11	1-5,2480-2476;7-8,2474-2473;10-18,2470-2462	6-6,2475-2475[SIL];9-9,2472-2471[AILt];19-21,2461-2459[UP3]	...(((((((((..((.(((((&))))).))-.)))))))))...	AAGGAGAAGAGGAGGAGGAAGA&UCUUCGUU-ACCUUUUCUUAAU	3	0.999999958800647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN363_c0_g1_2470_TPlot.pdf
TRINITY_DN363_c0_g1:2472	si_a786	TRINITY_DN363_c0_g1	2461	2480	2472	-26.60	-17.60	0.661654135338346	7.5	1-6,2480-2475;8-14,2474-2468;16-21,2466-2461	7-7,x-x[BULq];15-15,2467-2467[SIL]	((((((.(((((((-((((((&)))))).))))))).))))))	GGAGAAGAGGAGGA-GGAAGA&UCUUCUAUUUUUCUAUUUUCC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN363_c0_g1_2472_TPlot.pdf
TRINITY_DN363_c0_g1:2473	si_s807	TRINITY_DN363_c0_g1	2461	2482	2473	-28.90	-19.20	0.664359861591695	12	3-7,2480-2476;9-10,2474-2473;12-20,2470-2462	1-2,2482-2481[UP5];8-8,2475-2475[SIL];11-11,2472-2471[AILt];21-21,2461-2461[UP3]	.(((((((((..((.(((((..&..))))).))-.))))))))).	GGAGAAGAGGAGGAGGAAGACA&UAUCUUCGUU-ACCUUUUCUUA	3	0.999999999829269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN363_c0_g1_2473_TPlot.pdf
TRINITY_DN363_c0_g1:2474	si_s806	TRINITY_DN363_c0_g1	2462	2483	2474	-28.60	-18.80	0.657342657342657	13	4-8,2480-2476;10-11,2474-2473;13-21,2470-2462	1-3,2483-2481[UP5];9-9,2475-2475[SIL];12-12,2472-2471[AILt]	(((((((((..((.(((((...&...))))).))-.)))))))))	GAGAAGAGGAGGAGGAAGACAG&UUAUCUUCGUU-ACCUUUUCUU	2	0.999999993919301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN363_c0_g1_2474_TPlot.pdf
TRINITY_DN363_c0_g1:2506	si_s69	TRINITY_DN363_c0_g1	2495	2527	2506	-23.40	-15.40	0.658119658119658	28.5	1-6,2527-2522;7-21,2509-2495	x-x,2521-2510[BULt]	(((((((((((((((............((((((&))))))------------)))))))))))))))	GAAAGAAAGAGAGUGAUGAUAGUGAUUGAGGUU&AACUUC------------UAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN363_c0_g1_2506_TPlot.pdf
TRINITY_DN363_c1_g1:172	si_a325	TRINITY_DN363_c1_g1	161	181	172	-25.90	-17.00	0.656370656370656	9.5	1-3,181-179;5-7,177-175;9-19,173-163	4-4,178-178[SIL];8-8,174-174[SIL];20-21,162-161[UP3]	..(((((((((((.(((.(((&))).))).)))))))))))..	AAGAGGAAUGAGAUGAUGAUG&CAUGAUUUUUUUAUUCCUUGU	2	0.999973919801513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN363_c1_g1_172_TPlot.pdf
TRINITY_DN363_c1_g1:367	si_a118	TRINITY_DN363_c1_g1	356	376	367	-30.70	-22.50	0.732899022801303	7	2-2,375-375;4-13,373-364;15-21,362-356	1-1,376-376[UP5];3-3,374-374[SIL];14-14,363-363[SIL]	(((((((.((((((((((.(.&.).)))))))))).)))))))	AUUGCUGAGGAACAGGCUGGA&ACGAGCUUGUUUUAUAGCAAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN363_c1_g1_367_TPlot.pdf
TRINITY_DN36402_c0_g1:105	si_a257	TRINITY_DN36402_c0_g1	96	114	105	-38.20	-26.00	0.680628272251309	7	3-14,112-101;17-21,100-96	1-2,114-113[UP5];15-16,x-x[BULq]	(((((--((((((((((((..&..))))))))))))..)))))	GCGUU--CCCUCGAUGCGAAG&GAUUGUAUCGAGGGCAAACGC	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a257_TRINITY_DN36402_c0_g1_105_TPlot.pdf
TRINITY_DN36407_c0_g1:2660	si_a784	TRINITY_DN36407_c0_g1	2648	2670	2660	-24.70	-16.30	0.659919028340081	9	2-5,2669-2666;6-11,2664-2659;12-21,2657-2648	1-1,2670-2670[UP5];x-x,2665-2665[BULt];x-x,2658-2658[BULt]	((((((((((.((((((.((((.&.))))-))))))-))))))))))	GAAAUAGGAACAGUAGGUGGAGG&ACUCU-UCUAUU-UUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN36407_c0_g1_2660_TPlot.pdf
TRINITY_DN36407_c0_g1:487	si_a478	TRINITY_DN36407_c0_g1	477	496	487	-21.30	-16.00	0.751173708920188	4.5	2-12,495-485;14-20,484-478	1-1,496-496[UP5];13-13,x-x[BULq];21-21,477-477[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	UUAUUCUG-AUGACAAUAAUA&AAUUAUUGUUAUAUAGAAUAU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN36407_c0_g1_487_TPlot.pdf
TRINITY_DN3640_c0_g1:2044	si_a497	TRINITY_DN3640_c0_g1	2033	2053	2044	-32.00	-21.10	0.659375	9.5	4-6,2050-2048;8-20,2046-2034	1-3,2053-2051[UP5];7-7,2047-2047[SIL];21-21,2033-2033[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	CGGGAAGACGAAAACUGAAAG&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3640_c0_g1_2044_TPlot.pdf
TRINITY_DN36428_c0_g2:1074	si_s69	TRINITY_DN36428_c0_g2	1063	1083	1074	-23.40	-15.60	0.666666666666667	8	4-14,1080-1070;16-21,1068-1063	1-3,1083-1081[UP5];15-15,1069-1069[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAAAGAUAAAAAAUAGGGAAU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN36428_c0_g2_1074_TPlot.pdf
TRINITY_DN36428_c0_g2:2485	si_a779	TRINITY_DN36428_c0_g2	2473	2494	2485	-27.00	-18.90	0.7	5	2-11,2493-2484;12-19,2482-2475	1-1,2494-2494[UP5];x-x,2483-2483[BULt];20-21,2474-2473[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	UAAAAAAUAGCAAGAGUUGAAC&AUUCAACUCUU-CUAUUUUUCU	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN36428_c0_g2_2485_TPlot.pdf
TRINITY_DN36428_c0_g2:2490	si_a774	TRINITY_DN36428_c0_g2	2478	2499	2490	-29.20	-19.70	0.674657534246575	5	2-5,2498-2495;7-16,2493-2484;17-21,2482-2478	1-1,2499-2499[UP5];6-6,2494-2494[SIL];x-x,2483-2483[BULt]	(((((.((((((((((.((((.&.)))).))))))))))-)))))	AAUAGCAAGAGUUGAACCAGUG&GAUUGAUUCAACUCUU-CUAUU	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN36428_c0_g2_2490_TPlot.pdf
TRINITY_DN36428_c0_g2:943	si_a695	TRINITY_DN36428_c0_g2	932	956	943	-34.90	-23.70	0.679083094555874	13.5	4-8,953-949;9-21,944-932	1-3,956-954[UP5];x-x,948-945[BULt]	(((((((((((((....(((((...&...)))))----)))))))))))))	GAAUGUGCCAGUUACUAGUGUUACU&UCGAACAC----AACUGGUACAUUC	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a695_TRINITY_DN36428_c0_g2_943_TPlot.pdf
TRINITY_DN36428_c1_g1:658	si_s810	TRINITY_DN36428_c1_g1	647	668	658	-27.90	-18.60	0.666666666666667	9	1-4,668-665;6-8,663-661;9-17,659-651	5-5,664-664[SIL];x-x,660-660[BULt];18-21,650-647[UP3]	....(((((((((.(((.((((&)))).)))-)))))))))....	AAAGAAGAAAAGGAUGAGGAAG&CUUCGUUA-CCUUUUCUUAAUA	4	0.999999983799277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN36428_c1_g1_658_TPlot.pdf
TRINITY_DN3643_c0_g1:266	si_s764	TRINITY_DN3643_c0_g1	254	275	266	-25.70	-17.40	0.67704280155642	8	1-11,275-265;14-21,261-254	12-13,264-262[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	GGUGGUAGAGCAAUUGUUGUUG&CAACAACGAUU-AAUUACUAUU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN3643_c0_g1_266_TPlot.pdf
TRINITY_DN3643_c0_g1:851	si_s438	TRINITY_DN3643_c0_g1	840	860	851	-21.20	-13.90	0.655660377358491	7	1-8,860-853;10-18,851-843;20-21,841-840	9-9,852-852[SIL];19-19,842-842[SIL]	((.(((((((((.((((((((&)))))))).))))))))).))	GUAAUAUGUGGUUUGUGAUUG&UAAUUACAUAUUAUAUAUAAC	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN3643_c0_g1_851_TPlot.pdf
TRINITY_DN3643_c0_g1:941	si_a579	TRINITY_DN3643_c0_g1	930	950	941	-31.00	-20.78	0.670322580645161	8.5	1-15,950-936;19-20,932-931	16-18,935-933[SIL];21-21,930-930[UP3]	.((...(((((((((((((((&)))))))))))))))...)).	GCUGCGUUGUUGCAGGCAUGC&GUAUGUUUGUAACAAGAAGGA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a579_TRINITY_DN3643_c0_g1_941_TPlot.pdf
TRINITY_DN3645_c0_g1:2466	si_s807	TRINITY_DN3645_c0_g1	2451	2475	2466	-28.90	-19.90	0.688581314878893	17	4-11,2472-2465;12-20,2460-2452	1-3,2475-2473[UP5];x-x,2464-2461[BULt];21-21,2451-2451[UP3]	.(((((((((....((((((((...&...))))))))----))))))))).	GGAGAAGAGGGCGUUGACGAGGGAG&UAUCUUCGUUA----CCUUUUCUUA	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3645_c0_g1_2466_TPlot.pdf
TRINITY_DN3645_c0_g1:2895	si_s79	TRINITY_DN3645_c0_g1	2884	2904	2895	-26.20	-18.50	0.706106870229008	11	6-13,2899-2892;15-21,2890-2884	1-5,2904-2900[UP5];14-14,2891-2891[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	AAGAAGGCGGGAAAGAUAUCU&UUUUUUCUUUCCUUUCUUCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3645_c0_g1_2895_TPlot.pdf
TRINITY_DN3645_c0_g1:2904	si_a178	TRINITY_DN3645_c0_g1	2893	2913	2904	-32.90	-21.80	0.662613981762918	9	2-5,2912-2909;8-9,2906-2905;12-21,2902-2893	1-1,2913-2913[UP5];6-7,2908-2907[SIL];10-11,2904-2903[SIL]	((((((((((..((..((((.&.))))..))..))))))))))	GGAAAGAUAUCUUCGUGACGC&CCGUCUAGAUAAUAUCUUUCC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN3645_c0_g1_2904_TPlot.pdf
TRINITY_DN36477_c0_g1:2386	si_a784	TRINITY_DN36477_c0_g1	2375	2395	2386	-24.70	-22.50	0.910931174089069	6	2-19,2394-2377	1-1,2395-2395[UP5];20-21,2376-2375[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AUGGUGGGAAGAUAGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN36477_c0_g1_2386_TPlot.pdf
TRINITY_DN36477_c0_g1:2387	si_a783	TRINITY_DN36477_c0_g1	2376	2396	2387	-24.70	-22.50	0.910931174089069	7	3-20,2394-2377	1-2,2396-2395[UP5];21-21,2376-2376[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UGGUGGGAAGAUAGAAGAGGA&AACUCUUCUAUUUUUCUAUUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN36477_c0_g1_2387_TPlot.pdf
TRINITY_DN3647_c0_g1:1186	si_s76	TRINITY_DN3647_c0_g1	1174	1197	1186	-23.60	-16.30	0.690677966101695	9.5	1-7,1197-1191;8-18,1188-1178;19-21,1176-1174	x-x,1190-1189[BULt];x-x,1177-1177[BULt]	(((.(((((((((((..(((((((&)))))))--)))))))))))-)))	AAGCAGAGGAAGGAGUUAGAAGAU&AUUUUUU--UUCUUUCCUUU-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3647_c0_g1_1186_TPlot.pdf
TRINITY_DN3647_c0_g1:1187	si_s75	TRINITY_DN3647_c0_g1	1175	1198	1187	-24.00	-16.20	0.675	10	1-8,1198-1191;9-19,1188-1178;20-21,1176-1175	x-x,1190-1189[BULt];x-x,1177-1177[BULt]	((.(((((((((((..((((((((&))))))))--)))))))))))-))	AGCAGAGGAAGGAGUUAGAAGAUG&UAUUUUUU--UUCUUUCCUUU-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3647_c0_g1_1187_TPlot.pdf
TRINITY_DN3647_c0_g1:1188	si_s74	TRINITY_DN3647_c0_g1	1177	1199	1188	-25.00	-18.10	0.724	10	1-9,1199-1191;10-20,1188-1178	x-x,1190-1189[BULt];21-21,1177-1177[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	CAGAGGAAGGAGUUAGAAGAUGG&CUAUUUUUU--UUCUUUCCUUUC	4	0.99999999986239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3647_c0_g1_1188_TPlot.pdf
TRINITY_DN3647_c0_g1:1191	si_s73	TRINITY_DN3647_c0_g1	1178	1200	1191	-24.00	-18.10	0.754166666666667	10	2-10,1199-1191;11-21,1188-1178	1-1,1200-1200[UP5];x-x,1190-1189[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	AGAGGAAGGAGUUAGAAGAUGGU&UCUAUUUUUU--UUCUUUCCUUU	3	0.999999956221005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3647_c0_g1_1191_TPlot.pdf
TRINITY_DN3649_c0_g1:109	si_s64	TRINITY_DN3649_c0_g1	98	118	109	-24.10	-18.60	0.771784232365145	8	1-17,118-102	18-21,101-98[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUUUAAAAUGGGAGUUGUUGA&UUAGCAACUUCUAUUUUUUUU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3649_c0_g1_109_TPlot.pdf
TRINITY_DN3649_c0_g1:1508	si_s81	TRINITY_DN3649_c0_g1	1496	1517	1508	-28.90	-25.00	0.865051903114187	4	1-16,1517-1502;17-20,1500-1497	x-x,1501-1501[BULt];21-21,1496-1496[UP3]	.((((.((((((((((((((((&))))))))))))))))-)))).	UGAAGAAAGAAGGGAAAGAGAA&UUUUCUUUCCUUUCUU-CUUCU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3649_c0_g1_1508_TPlot.pdf
TRINITY_DN3649_c0_g1:1512	si_s77	TRINITY_DN3649_c0_g1	1501	1521	1512	-25.50	-20.10	0.788235294117647	9.5	5-20,1517-1502	1-4,1521-1518[UP5];21-21,1501-1501[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAGAAGGGAAAGAGAACAGC&UUUUUUUUCUUUCCUUUCUUC	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3649_c0_g1_1512_TPlot.pdf
TRINITY_DN3649_c0_g1:166	si_a792	TRINITY_DN3649_c0_g1	155	175	166	-27.60	-20.10	0.728260869565217	11	4-9,172-167;11-20,165-156	1-3,175-173[UP5];10-10,166-166[SIL];21-21,155-155[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	AGGAUUGGAAGCUGGAGAUUG&AUUUUUCUAUUUUCCAAUCCG	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3649_c0_g1_166_TPlot.pdf
TRINITY_DN364_c0_g1:3486	si_s8	TRINITY_DN364_c0_g1	3475	3497	3486	-21.30	-14.50	0.68075117370892	9	1-7,3497-3491;8-12,3488-3484;15-21,3481-3475	x-x,3490-3489[BULt];13-14,3483-3482[SIL]	(((((((..(((((..(((((((&)))))))--)))))..)))))))	GAUGUAGGUAUAAUUCGAGUAGU&AUUACUU--AUUAUUACUAUAUU	3	0.999956421867691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN364_c0_g1_3486_TPlot.pdf
TRINITY_DN364_c0_g2:2719	si_s482	TRINITY_DN364_c0_g2	2707	2728	2719	-21.20	-15.02	0.708490566037736	6.5	1-12,2728-2717;16-21,2712-2707	13-15,2716-2713[AILt]	((((((....((((((((((((&))))))))))))-...))))))	GUAUUUCACUUAGAUAUAGGAU&AUCCUAUAUUUA-UUUAAAUAU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN364_c0_g2_2719_TPlot.pdf
TRINITY_DN3650_c0_g2:1794	si_s66	TRINITY_DN3650_c0_g2	1783	1803	1794	-26.30	-18.00	0.684410646387833	8	1-3,1803-1801;5-10,1799-1794;13-21,1791-1783	4-4,1800-1800[SIL];11-12,1793-1792[SIL]	(((((((((..((((((.(((&))).))))))..)))))))))	GGAAAAGAACAGGAAGUAGCU&AGCAACUUCUAUUUUUUUUCU	2	0.999384461095691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN3650_c0_g2_1794_TPlot.pdf
TRINITY_DN3652_c0_g1:851	si_a114	TRINITY_DN3652_c0_g1	840	860	851	-27.90	-19.40	0.695340501792115	13	4-17,857-844	1-3,860-858[UP5];18-21,843-840[UP3]	....((((((((((((((...&...))))))))))))))....	CAAGGAAGCGGGCUCGUGCGA&AAAUACGAGCUUGUUUUAUAG	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN3652_c0_g1_851_TPlot.pdf
TRINITY_DN3652_c0_g1:852	si_a113	TRINITY_DN3652_c0_g1	841	861	852	-26.20	-19.40	0.740458015267176	13.5	5-18,857-844	1-4,861-858[UP5];19-21,843-841[UP3]	...((((((((((((((....&....))))))))))))))...	AAGGAAGCGGGCUCGUGCGAC&AAAAUACGAGCUUGUUUUAUA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN3652_c0_g1_852_TPlot.pdf
TRINITY_DN3652_c0_g1:853	si_a112	TRINITY_DN3652_c0_g1	842	862	853	-26.20	-19.40	0.740458015267176	14	6-19,857-844	1-5,862-858[UP5];20-21,843-842[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGGAAGCGGGCUCGUGCGACA&UAAAAUACGAGCUUGUUUUAU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN3652_c0_g1_853_TPlot.pdf
TRINITY_DN3652_c0_g1:854	si_a111	TRINITY_DN3652_c0_g1	843	863	854	-26.20	-19.40	0.740458015267176	15	7-20,857-844	1-6,863-858[UP5];21-21,843-843[UP3]	.((((((((((((((......&......)))))))))))))).	GGAAGCGGGCUCGUGCGACAU&AUAAAAUACGAGCUUGUUUUA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN3652_c0_g1_854_TPlot.pdf
TRINITY_DN3652_c0_g1:855	si_a110	TRINITY_DN3652_c0_g1	844	864	855	-27.80	-19.00	0.683453237410072	16	8-21,857-844	1-7,864-858[UP5]	((((((((((((((.......&.......))))))))))))))	GAAGCGGGCUCGUGCGACAUG&GAUAAAAUACGAGCUUGUUUU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN3652_c0_g1_855_TPlot.pdf
TRINITY_DN3652_c0_g1:900	si_a303	TRINITY_DN3652_c0_g1	889	909	900	-28.40	-19.60	0.690140845070423	11	4-15,906-895;17-19,893-891	1-3,909-907[UP5];16-16,894-894[SIL];20-21,890-889[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	CAGAAGCCGGGCGAGUCUCGG&AAAAGAUUCGCUUGGAUUUAU	2	0.954345126081691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN3652_c0_g1_900_TPlot.pdf
TRINITY_DN3652_c0_g1:901	si_a302	TRINITY_DN3652_c0_g1	890	910	901	-28.20	-19.60	0.695035460992908	11.5	5-16,906-895;18-20,893-891	1-4,910-907[UP5];17-17,894-894[SIL];21-21,890-890[UP3]	.(((.((((((((((((....&....)))))))))))).))).	AGAAGCCGGGCGAGUCUCGGG&AAAAAGAUUCGCUUGGAUUUA	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN3652_c0_g1_901_TPlot.pdf
TRINITY_DN3652_c0_g1:902	si_a301	TRINITY_DN3652_c0_g1	891	911	902	-27.80	-19.40	0.697841726618705	15	6-17,906-895	1-5,911-907[UP5];18-21,894-891[UP3]	....((((((((((((.....&.....))))))))))))....	GAAGCCGGGCGAGUCUCGGGC&AAAAAAGAUUCGCUUGGAUUU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN3652_c0_g1_902_TPlot.pdf
TRINITY_DN3652_c0_g1:905	si_a298	TRINITY_DN3652_c0_g1	894	914	905	-28.10	-19.40	0.690391459074733	18	9-20,906-895	1-8,914-907[UP5];21-21,894-894[UP3]	.((((((((((((........&........)))))))))))).	GCCGGGCGAGUCUCGGGCCAU&UUUAAAAAAGAUUCGCUUGGA	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN3652_c0_g1_905_TPlot.pdf
TRINITY_DN36554_c0_g1:2771	si_s89	TRINITY_DN36554_c0_g1	2753	2781	2771	-35.30	-24.20	0.685552407932011	10	1-2,2781-2780;3-16,2778-2765;17-21,2757-2753	x-x,2779-2779[BULt];x-x,2764-2758[BULt]	(((((.......((((((((((((((.((&))-))))))))))))))-------)))))	CGAAGAGAUGAUCGAAGAAGAGGAAACGG&CC-UUUCUUCUUCUUCG-------CUUCG	4	0.999999999812447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN36554_c0_g1_2771_TPlot.pdf
TRINITY_DN3655_c0_g1:629	si_a651	TRINITY_DN3655_c0_g1	618	638	629	-33.30	-22.60	0.678678678678679	6.5	3-15,636-624;17-20,622-619	1-2,638-637[UP5];16-16,623-623[SIL];21-21,618-618[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	UGGCAGUUUCCGAUGUAUUUU&GUAAUAUAUCGGGAAAUGCCU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a651_TRINITY_DN3655_c0_g1_629_TPlot.pdf
TRINITY_DN3655_c2_g1:65	si_a313	TRINITY_DN3655_c2_g1	54	75	65	-28.70	-19.10	0.665505226480836	8.5	1-8,75-68;9-16,66-59	x-x,67-67[BULt];17-21,58-54[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	UUUUAUAUGGAUGUAAUCCAAG&CUUGGAUU-UAUCCAUGAUUUU	3	0.999923186256062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN3655_c2_g1_65_TPlot.pdf
TRINITY_DN3656_c0_g1:2006	si_s34	TRINITY_DN3656_c0_g1	1995	2015	2006	-23.30	-15.48	0.664377682403433	7.5	1-5,2015-2011;9-21,2007-1995	6-8,2010-2008[SIL]	(((((((((((((...(((((&)))))...)))))))))))))	UAGUUGUUAAAGAAAAAGUUG&CAACUAAAUCUUUAAUAAUUG	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN3656_c0_g1_2006_TPlot.pdf
TRINITY_DN3656_c0_g1:2478	si_s87	TRINITY_DN3656_c0_g1	2468	2490	2478	-32.90	-22.70	0.689969604863222	9.5	1-9,2490-2482;10-15,2478-2473;17-21,2472-2468	x-x,2481-2479[BULt];16-16,x-x[BULq]	(((((-((((((...(((((((((&)))))))))---)))))).)))))	AAGCG-AGAGGGAUUAGAAAGGAG&UUCCUUUCU---UCUUCUUCGCUU	3	0.999999999999967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3656_c0_g1_2478_TPlot.pdf
TRINITY_DN3656_c0_g1:2479	si_s312	TRINITY_DN3656_c0_g1	2468	2489	2479	-29.00	-19.40	0.668965517241379	12.5	5-9,2485-2481;10-20,2479-2469	1-4,2489-2486[UP5];x-x,2480-2480[BULt];21-21,2468-2468[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	AAGCGAGAGGGAUUAGAAAGGA&AAAAUUCUG-UCCUUCUUGUUA	3	0.999999999915938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3656_c0_g1_2479_TPlot.pdf
TRINITY_DN3656_c0_g1:4491	si_a471	TRINITY_DN3656_c0_g1	4479	4500	4491	-21.10	-14.60	0.691943127962085	10	5-14,4496-4487;15-21,4485-4479	1-4,4500-4497[UP5];x-x,4486-4486[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GUAUGACAAAUAAUUGCAAUCU&AAUAUGUAAUUAUU-GUUAUAU	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN3656_c0_g1_4491_TPlot.pdf
TRINITY_DN3657_c0_g1:2427	si_s800	TRINITY_DN3657_c0_g1	2414	2437	2427	-29.70	-19.80	0.666666666666667	12	1-8,2437-2430;9-12,2428-2425;13-21,2422-2414	x-x,2429-2429[BULt];x-x,2424-2423[BULt]	(((((((((..((((.((((((((&))))))))-))))--)))))))))	AGGUGGCGAAUGGGUCGAAGUAUG&CGUAUUUU-AUCU--UCGUUACCU	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN3657_c0_g1_2427_TPlot.pdf
TRINITY_DN3658_c0_g1:2386	si_a466	TRINITY_DN3658_c0_g1	2375	2394	2386	-21.50	-14.30	0.665116279069767	6.5	1-5,2394-2390;9-21,2387-2375	6-8,2389-2388[AILq]	(((((((((((((..-(((((&)))))...)))))))))))))	ACAAUAGUUACAUUC-AUAUA&UAUAUAAUAUGUAAUUAUUGU	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN3658_c0_g1_2386_TPlot.pdf
TRINITY_DN36597_c0_g1:2393	si_s321	TRINITY_DN36597_c0_g1	2376	2402	2393	-31.00	-20.40	0.658064516129032	12	2-10,2401-2393;11-14,2388-2385;15-21,2382-2376	1-1,2402-2402[UP5];x-x,2392-2389[BULt];x-x,2384-2383[BULt]	(((((((..((((....(((((((((.&.)))))))))----))))--)))))))	GUAUGUUCCUGUACCGAACGAGAAGGU&UCCUUCUUGU----UACA--AACAUAC	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN36597_c0_g1_2393_TPlot.pdf
TRINITY_DN36597_c0_g1:4626	si_a469	TRINITY_DN36597_c0_g1	4613	4635	4626	-21.10	-13.80	0.654028436018957	8	4-15,4632-4621;16-20,4618-4614	1-3,4635-4633[UP5];x-x,4620-4619[BULt];21-21,4613-4613[UP3]	.(((((..((((((((((((...&...))))))))))))--))))).	CUAACAGGAUAAUUACAUAUAUU&AUAAUAUGUAAUUAU--UGUUAU	2	0.999868477795088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN36597_c0_g1_4626_TPlot.pdf
TRINITY_DN36597_c0_g1:4670	si_s64	TRINITY_DN36597_c0_g1	4659	4680	4670	-24.10	-15.70	0.651452282157676	9.5	1-5,4680-4676;8-18,4672-4662	6-7,4675-4673[AILt];19-21,4661-4659[UP3]	...(((((((((((...(((((&)))))-..)))))))))))...	AGUGAAAAUAGAAGCUGGCUAA&UUAGC-AACUUCUAUUUUUUUU	3	0.999999999999955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN36597_c0_g1_4670_TPlot.pdf
TRINITY_DN36597_c0_g1:5325	si_s504	TRINITY_DN36597_c0_g1	5315	5334	5325	-24.70	-16.30	0.659919028340081	5.5	1-11,5334-5324;13-18,5323-5318	12-12,x-x[BULq];19-21,5317-5315[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CCCGUAUAG-AUUGUUUUGUU&AACAAAACAAUUCUAUAUUCU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN36597_c0_g1_5325_TPlot.pdf
TRINITY_DN36597_c0_g1:7634	si_a418	TRINITY_DN36597_c0_g1	7623	7643	7634	-21.20	-15.90	0.75	3.5	1-14,7643-7630;17-20,7627-7624	15-16,7629-7628[SIL];21-21,7623-7623[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	UUCCUCAGUUUAUUUAAAUAU&AUAUUUAAAUAAAUAUAGGAU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN36597_c0_g1_7634_TPlot.pdf
TRINITY_DN36597_c0_g1:854	si_s76	TRINITY_DN36597_c0_g1	842	863	854	-23.60	-17.10	0.724576271186441	8	2-13,862-851;14-19,849-844	1-1,863-863[UP5];x-x,850-850[BULt];20-21,843-842[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	UCGAAAGGAAAAGGAGAAAGGG&AUUUUUUUUCUUU-CCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN36597_c0_g1_854_TPlot.pdf
TRINITY_DN365_c2_g1:93	si_s424	TRINITY_DN365_c2_g1	82	103	93	-22.90	-16.70	0.729257641921397	6.5	1-9,103-95;11-20,92-83	10-10,94-93[AILt];21-21,82-82[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	CUGAUUAUUGUCGAUAUAGAGU&AUUCUAUAU-AACAAUAAUUAC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN365_c2_g1_93_TPlot.pdf
TRINITY_DN3660_c1_g1:1032	si_a768	TRINITY_DN3660_c1_g1	1021	1041	1032	-28.40	-19.20	0.676056338028169	5.5	1-7,1041-1035;9-16,1033-1026;18-21,1024-1021	8-8,1034-1034[SIL];17-17,1025-1025[SIL]	((((.((((((((.(((((((&))))))).)))))))).))))	GGAGAUGAAUCAAAUAGAAAC&GUUUUUGAUUGAUUCAACUCU	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN3660_c1_g1_1032_TPlot.pdf
TRINITY_DN3661_c0_g1:1500	si_s82	TRINITY_DN3661_c0_g1	1485	1509	1500	-28.90	-19.10	0.660899653979239	14.5	2-4,1508-1506;6-11,1504-1499;12-21,1494-1485	1-1,1509-1509[UP5];5-5,1505-1505[SIL];x-x,1498-1495[BULt]	((((((((((....((((((.(((.&.))).))))))----))))))))))	GAGGAGGAGGCGUUGAGGAAUGAAG&UUUCUUUCCUU----UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3661_c0_g1_1500_TPlot.pdf
TRINITY_DN36626_c0_g1:381	si_s87	TRINITY_DN36626_c0_g1	370	390	381	-32.90	-22.80	0.693009118541034	6.5	2-10,389-381;12-20,379-371	1-1,390-390[UP5];11-11,380-380[SIL];21-21,370-370[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UAGUGAAGAAAAAGGAAGGGG&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999999719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN36626_c0_g1_381_TPlot.pdf
TRINITY_DN3662_c0_g1:191	si_a503	TRINITY_DN3662_c0_g1	175	200	191	-32.10	-22.00	0.685358255451713	18	5-10,196-191;11-21,185-175	1-4,200-197[UP5];x-x,190-186[BULt]	(((((((((((.....((((((....&....))))))-----)))))))))))	UAUUCCGAGGAGUGCAAGACGAUGAU&UUUUUCGUCU-----UCCUUGGAAUG	4	0.999972084218589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN3662_c0_g1_191_TPlot.pdf
TRINITY_DN3662_c0_g1:192	si_a502	TRINITY_DN3662_c0_g1	176	201	192	-32.10	-20.90	0.651090342679128	19.5	6-11,196-191;12-21,185-176	1-5,201-197[UP5];x-x,190-186[BULt]	((((((((((.....((((((.....&.....))))))-----))))))))))	AUUCCGAGGAGUGCAAGACGAUGAUG&GUUUUUCGUCU-----UCCUUGGAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3662_c0_g1_192_TPlot.pdf
TRINITY_DN3662_c0_g1:562	si_a795	TRINITY_DN3662_c0_g1	551	571	562	-30.20	-21.00	0.695364238410596	5.5	2-13,570-559;15-17,557-555;19-21,553-551	1-1,571-571[UP5];14-14,558-558[SIL];18-18,554-554[SIL]	(((.(((.((((((((((((.&.)))))))))))).))).)))	UUUGGGAGUGGAAGAUGGAAC&UUUCUAUUUUCCAAUCCGAAG	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN3662_c0_g1_562_TPlot.pdf
TRINITY_DN3662_c0_g1:564	si_a793	TRINITY_DN3662_c0_g1	553	573	564	-28.50	-19.60	0.687719298245614	9	4-15,570-559;17-19,557-555;21-21,553-553	1-3,573-571[UP5];16-16,558-558[SIL];20-20,554-554[SIL]	(.(((.((((((((((((...&...)))))))))))).))).)	UGGGAGUGGAAGAUGGAACGA&UUUUUCUAUUUUCCAAUCCGA	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN3662_c0_g1_564_TPlot.pdf
TRINITY_DN3662_c0_g1:565	si_a792	TRINITY_DN3662_c0_g1	554	574	565	-27.60	-19.60	0.710144927536232	11	5-16,570-559;18-20,557-555	1-4,574-571[UP5];17-17,558-558[SIL];21-21,554-554[UP3]	.(((.((((((((((((....&....)))))))))))).))).	GGGAGUGGAAGAUGGAACGAA&AUUUUUCUAUUUUCCAAUCCG	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3662_c0_g1_565_TPlot.pdf
TRINITY_DN3663_c0_g1:1941	si_a756	TRINITY_DN3663_c0_g1	1929	1952	1941	-33.10	-21.80	0.658610271903323	13	3-9,1950-1944;10-12,1941-1939;13-19,1937-1931	1-2,1952-1951[UP5];x-x,1943-1942[BULt];x-x,1938-1938[BULt];20-21,1930-1929[UP3]	..(((((((.(((..(((((((..&..)))))))--)))-)))))))..	UCCGAAGACACCAAAGAGGAGGAC&AACCUCCUU--UGG-GUUUUUGAU	2	0.999996258161269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3663_c0_g1_1941_TPlot.pdf
TRINITY_DN3663_c0_g1:2072	si_s528	TRINITY_DN3663_c0_g1	2062	2081	2072	-29.40	-19.50	0.663265306122449	6	1-6,2081-2076;8-16,2074-2066;18-20,2065-2063	7-7,2075-2075[SIL];17-17,x-x[BULq];21-21,2062-2062[UP3]	.(((-(((((((((.((((((&)))))).))))))))).))).	AGGA-CGAGGAUGACUUCGAA&UUCGAAAUCAUUUUUGAUCCG	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN3663_c0_g1_2072_TPlot.pdf
TRINITY_DN3663_c0_g1:2077	si_s523	TRINITY_DN3663_c0_g1	2066	2087	2077	-24.50	-17.20	0.702040816326531	10.5	1-3,2087-2085;6-11,2081-2076;13-21,2074-2066	4-5,2084-2082[AILt];12-12,2075-2075[SIL]	(((((((((.((((((...(((&)))-..)))))).)))))))))	CGAGGAUGACUUCGAAGAGGAG&CUU-AAUUCGAAAUCAUUUUUG	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN3663_c0_g1_2077_TPlot.pdf
TRINITY_DN3663_c0_g1:2087	si_s91	TRINITY_DN3663_c0_g1	2076	2096	2087	-34.70	-25.50	0.734870317002882	5.5	1-13,2096-2084;15-21,2082-2076	14-14,2083-2083[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	UUCGAAGAGGAGGAGGAGGAA&UUUCUUCUUCUUCGCUUCGGA	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3663_c0_g1_2087_TPlot.pdf
TRINITY_DN3663_c0_g1:2088	si_s90	TRINITY_DN3663_c0_g1	2077	2097	2088	-35.30	-27.00	0.764872521246459	5	1-14,2097-2084;16-21,2082-2077	15-15,2083-2083[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UCGAAGAGGAGGAGGAGGAAG&CUUUCUUCUUCUUCGCUUCGG	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3663_c0_g1_2088_TPlot.pdf
TRINITY_DN3663_c0_g1:2089	si_s84	TRINITY_DN3663_c0_g1	2078	2098	2089	-32.30	-25.20	0.780185758513932	6.5	1-6,2098-2093;8-21,2091-2078	7-7,2092-2092[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	CGAAGAGGAGGAGGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3663_c0_g1_2089_TPlot.pdf
TRINITY_DN3663_c0_g1:2092	si_s81	TRINITY_DN3663_c0_g1	2081	2101	2092	-28.90	-21.40	0.740484429065744	8	1-9,2101-2093;11-21,2091-2081	10-10,2092-2092[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AGAGGAGGAGGAGGAAGAGGA&UUUUCUUUCCUUUCUUCUUCU	2	0.999998908657712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3663_c0_g1_2092_TPlot.pdf
TRINITY_DN3663_c0_g1:2094	si_s79	TRINITY_DN3663_c0_g1	2082	2103	2094	-26.20	-20.10	0.767175572519084	10	3-11,2101-2093;12-21,2091-2082	1-2,2103-2102[UP5];x-x,2092-2092[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	GAGGAGGAGGAGGAAGAGGAUG&UUUUUUCUUUC-CUUUCUUCUU	3	0.999999998248662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3663_c0_g1_2094_TPlot.pdf
TRINITY_DN3663_c0_g1:2095	si_s74	TRINITY_DN3663_c0_g1	2083	2104	2095	-25.00	-16.50	0.66	9.5	2-14,2103-2091;15-20,2089-2084	1-1,2104-2104[UP5];x-x,2090-2090[BULt];21-21,2083-2083[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	AGGAGGAGGAGGAAGAGGAUGA&CUAUUUUUUUUCUU-UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3663_c0_g1_2095_TPlot.pdf
TRINITY_DN3663_c0_g1:2096	si_s73	TRINITY_DN3663_c0_g1	2084	2105	2096	-24.00	-16.30	0.679166666666667	10.5	3-15,2103-2091;16-21,2089-2084	1-2,2105-2104[UP5];x-x,2090-2090[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	GGAGGAGGAGGAAGAGGAUGAU&UCUAUUUUUUUUCUU-UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3663_c0_g1_2096_TPlot.pdf
TRINITY_DN3663_c0_g1:2097	si_s72	TRINITY_DN3663_c0_g1	2085	2106	2097	-24.10	-16.00	0.663900414937759	11.5	4-16,2103-2091;17-21,2089-2085	1-3,2106-2104[UP5];x-x,2090-2090[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAGGAGGAGGAAGAGGAUGAUG&UUCUAUUUUUUUUCUU-UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3663_c0_g1_2097_TPlot.pdf
TRINITY_DN3663_c0_g1:2098	si_s71	TRINITY_DN3663_c0_g1	2086	2109	2098	-25.70	-17.10	0.665369649805448	11	1-4,2109-2106;5-17,2103-2091;18-21,2089-2086	x-x,2105-2104[BULt];x-x,2090-2090[BULt]	((((.(((((((((((((..((((&))))--)))))))))))))-))))	AGGAGGAGGAAGAGGAUGAUGAGG&CUUC--UAUUUUUUUUCUU-UCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3663_c0_g1_2098_TPlot.pdf
TRINITY_DN3663_c0_g1:2099	si_s810	TRINITY_DN3663_c0_g1	2088	2109	2099	-27.90	-19.50	0.698924731182796	10.5	1-8,2109-2102;9-17,2100-2092	x-x,2101-2101[BULt];18-21,2091-2088[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	GAGGAGGAAGAGGAUGAUGAGG&CUUCGUUA-CCUUUUCUUAAUA	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN3663_c0_g1_2099_TPlot.pdf
TRINITY_DN3663_c0_g1:2100	si_s809	TRINITY_DN3663_c0_g1	2089	2110	2100	-28.50	-21.10	0.740350877192983	9	1-9,2110-2102;10-18,2100-2092	x-x,2101-2101[BULt];19-21,2091-2089[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AGGAGGAAGAGGAUGAUGAGGA&UCUUCGUUA-CCUUUUCUUAAU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3663_c0_g1_2100_TPlot.pdf
TRINITY_DN3663_c0_g1:2102	si_s808	TRINITY_DN3663_c0_g1	2090	2111	2102	-28.60	-21.10	0.737762237762238	9	2-10,2110-2102;11-19,2100-2092	1-1,2111-2111[UP5];x-x,2101-2101[BULt];20-21,2091-2090[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	GGAGGAAGAGGAUGAUGAGGAA&AUCUUCGUUA-CCUUUUCUUAA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3663_c0_g1_2102_TPlot.pdf
TRINITY_DN3663_c0_g1:2103	si_s807	TRINITY_DN3663_c0_g1	2091	2112	2103	-28.90	-21.10	0.730103806228374	10	3-11,2110-2102;12-20,2100-2092	1-2,2112-2111[UP5];x-x,2101-2101[BULt];21-21,2091-2091[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	GAGGAAGAGGAUGAUGAGGAAG&UAUCUUCGUUA-CCUUUUCUUA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3663_c0_g1_2103_TPlot.pdf
TRINITY_DN3663_c0_g1:2104	si_s806	TRINITY_DN3663_c0_g1	2092	2113	2104	-28.60	-20.70	0.723776223776224	11	4-12,2110-2102;13-21,2100-2092	1-3,2113-2111[UP5];x-x,2101-2101[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	AGGAAGAGGAUGAUGAGGAAGA&UUAUCUUCGUUA-CCUUUUCUU	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN3663_c0_g1_2104_TPlot.pdf
TRINITY_DN3663_c0_g1:2105	si_s805	TRINITY_DN3663_c0_g1	2093	2114	2105	-28.60	-19.90	0.695804195804196	12	5-13,2110-2102;14-21,2100-2093	1-4,2114-2111[UP5];x-x,2101-2101[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	GGAAGAGGAUGAUGAGGAAGAC&UUUAUCUUCGUUA-CCUUUUCU	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3663_c0_g1_2105_TPlot.pdf
TRINITY_DN3663_c0_g1:2113	si_a73	TRINITY_DN3663_c0_g1	2100	2122	2113	-21.90	-14.50	0.662100456621005	10	1-3,2122-2120;6-13,2117-2110;14-21,2107-2100	4-5,2119-2118[SIL];x-x,2109-2108[BULt]	((((((((..((((((((..(((&)))..))))))))--))))))))	GAUGAUGAGGAAGACGAUGGGGA&UUCAAAUUGUUUU--UCAUUAUU	2	0.999999934481402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN3663_c0_g1_2113_TPlot.pdf
TRINITY_DN3663_c0_g1:2156	si_s808	TRINITY_DN3663_c0_g1	2145	2165	2156	-28.60	-18.60	0.65034965034965	7	1-5,2165-2161;7-18,2159-2148	6-6,2160-2160[SIL];19-21,2147-2145[UP3]	...((((((((((((.(((((&))))).))))))))))))...	GGUGGAAAGGGUAAUAAAGAU&AUCUUCGUUACCUUUUCUUAA	4	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3663_c0_g1_2156_TPlot.pdf
TRINITY_DN3663_c0_g1:2159	si_s805	TRINITY_DN3663_c0_g1	2148	2168	2159	-28.60	-18.60	0.65034965034965	9	4-8,2165-2161;10-21,2159-2148	1-3,2168-2166[UP5];9-9,2160-2160[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GGAAAGGGUAAUAAAGAUCAG&UUUAUCUUCGUUACCUUUUCU	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3663_c0_g1_2159_TPlot.pdf
TRINITY_DN36645_c0_g1:203	si_s68	TRINITY_DN36645_c0_g1	192	218	203	-23.10	-16.00	0.692640692640693	15	1-5,218-214;6-18,207-195	x-x,213-208[BULt];19-21,194-192[UP3]	...(((((((((((((......(((((&)))))------)))))))))))))...	UGUGAAAAAAAAUAGAAAUGUUAGUUG&CAACU------UCUAUUUUUUUUCUUU	2	0.999999989353871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN36645_c0_g1_203_TPlot.pdf
TRINITY_DN36646_c0_g1:187	si_s7	TRINITY_DN36646_c0_g1	176	196	187	-21.70	-16.48	0.759447004608295	9	1-8,196-189;12-21,185-176	9-11,188-186[SIL]	((((((((((...((((((((&))))))))...))))))))))	GUAUAGUAAUUAGGAGUAGUG&UAUUACUUAUUAUUACUAUAU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN36646_c0_g1_187_TPlot.pdf
TRINITY_DN3664_c0_g1:1541	si_s875	TRINITY_DN3664_c0_g1	1530	1550	1541	-26.50	-19.70	0.743396226415094	8	1-15,1550-1536	16-21,1535-1530[UP3]	......(((((((((((((((&)))))))))))))))......	AGCUGAUUUGGUUUUAAGACC&GGUCUUAGAACUAAAAAUAAA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s875_TRINITY_DN3664_c0_g1_1541_TPlot.pdf
TRINITY_DN3664_c0_g1:1542	si_s874	TRINITY_DN3664_c0_g1	1531	1551	1542	-28.00	-19.80	0.707142857142857	7.5	2-16,1550-1536	1-1,1551-1551[UP5];17-21,1535-1531[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GCUGAUUUGGUUUUAAGACCA&CGGUCUUAGAACUAAAAAUAA	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN3664_c0_g1_1542_TPlot.pdf
TRINITY_DN3664_c0_g1:34	si_a421	TRINITY_DN3664_c0_g1	23	43	34	-26.40	-18.10	0.685606060606061	16	9-20,35-24	1-8,43-36[UP5];21-21,23-23[UP3]	.((((((((((((........&........)))))))))))).	AGGAUCCUAUAUUAUAUACCG&UUUAAAUAAAUAUAGGAUCCG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN3664_c0_g1_34_TPlot.pdf
TRINITY_DN3664_c0_g1:701	si_a410	TRINITY_DN3664_c0_g1	690	710	701	-17.80	-11.60	0.651685393258427	10	3-15,708-696	1-2,710-709[UP5];16-21,695-690[UP3]	......(((((((((((((..&..)))))))))))))......	UUGCUCUAAAUAUAAGCAAUC&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999993112	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3664_c0_g1_701_TPlot.pdf
TRINITY_DN3664_c0_g1:983	si_s76	TRINITY_DN3664_c0_g1	971	992	983	-23.60	-17.80	0.754237288135593	10.5	1-11,992-982;13-19,979-973	12-12,981-980[AILt];20-21,972-971[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	UUGAAGGGAUUAGAGAAGAGGU&AUUUUUUUUCU-UUCCUUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3664_c0_g1_983_TPlot.pdf
TRINITY_DN3664_c0_g1:984	si_s75	TRINITY_DN3664_c0_g1	972	993	984	-24.00	-18.60	0.775	9	1-12,993-982;14-20,979-973	13-13,981-980[AILt];21-21,972-972[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	UGAAGGGAUUAGAGAAGAGGUG&UAUUUUUUUUCU-UUCCUUUCU	4	0.999999696230004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3664_c0_g1_984_TPlot.pdf
TRINITY_DN3664_c0_g1:985	si_s74	TRINITY_DN3664_c0_g1	973	994	985	-25.00	-21.30	0.852	7.5	1-13,994-982;15-21,979-973	14-14,981-980[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	GAAGGGAUUAGAGAAGAGGUGG&CUAUUUUUUUUCU-UUCCUUUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3664_c0_g1_985_TPlot.pdf
TRINITY_DN3664_c0_g1:986	si_s73	TRINITY_DN3664_c0_g1	973	995	986	-24.00	-19.80	0.825	8	1-14,995-982;15-21,979-973	x-x,981-980[BULt]	(((((((..((((((((((((((&))))))))))))))--)))))))	GAAGGGAUUAGAGAAGAGGUGGA&UCUAUUUUUUUUCU--UUCCUUU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3664_c0_g1_986_TPlot.pdf
TRINITY_DN3664_c0_g1:987	si_s72	TRINITY_DN3664_c0_g1	975	996	987	-24.10	-19.00	0.788381742738589	8.5	2-15,995-982;17-21,979-975	1-1,996-996[UP5];16-16,981-980[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	AGGGAUUAGAGAAGAGGUGGAU&UUCUAUUUUUUUUCU-UUCCUU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3664_c0_g1_987_TPlot.pdf
TRINITY_DN3664_c0_g1:988	si_a321	TRINITY_DN3664_c0_g1	977	997	988	-26.70	-17.60	0.659176029962547	8	1-7,997-991;10-17,988-981;19-21,979-977	8-9,990-989[SIL];18-18,980-980[SIL]	(((.((((((((..(((((((&)))))))..)))))))).)))	GGAUUAGAGAAGAGGUGGAUA&UAUCCAUGAUUUUUUUAUUCC	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3664_c0_g1_988_TPlot.pdf
TRINITY_DN3665_c0_g1:1393	si_a499	TRINITY_DN3665_c0_g1	1382	1403	1393	-35.20	-25.30	0.71875	8.5	2-6,1402-1398;7-21,1396-1382	1-1,1403-1403[UP5];x-x,1397-1397[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	CCGAGGAAGAUGAAGUGAUGGU&GUCGUU-UUUCGUCUUCCUUGG	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3665_c0_g1_1393_TPlot.pdf
TRINITY_DN3665_c0_g1:848	si_s67	TRINITY_DN3665_c0_g1	838	856	848	-25.60	-16.96	0.6625	8.5	1-9,856-848;15-21,844-838	10-14,847-845[AILq]	(((((((...--(((((((((&))))))))).....)))))))	AAGAAAGUUA--AGAAGUUGC&GCAACUUCUAUUUUUUUUCUU	4	0.999999999999477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3665_c0_g1_848_TPlot.pdf
TRINITY_DN3666_c0_g1:937	si_s72	TRINITY_DN3666_c0_g1	926	946	937	-24.10	-16.30	0.676348547717842	7	1-5,946-942;7-18,940-929	6-6,941-941[SIL];19-21,928-926[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AUAGAAAGAAAGAGACUAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3666_c0_g1_937_TPlot.pdf
TRINITY_DN36674_c0_g1:590	si_a499	TRINITY_DN36674_c0_g1	578	599	590	-35.20	-25.00	0.710227272727273	10.5	1-5,599-595;8-12,592-588;13-21,586-578	6-7,594-593[SIL];x-x,587-587[BULt]	(((((((((.(((((..(((((&)))))..)))))-)))))))))	UCAAGGAAGUGCGGAUCGCGGC&GUCGUUUUUCGU-CUUCCUUGG	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN36674_c0_g1_590_TPlot.pdf
TRINITY_DN36675_c0_g1:32	si_a23	TRINITY_DN36675_c0_g1	21	40	32	-22.80	-15.60	0.684210526315789	7.5	1-5,40-36;7-21,35-21	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	UUUUGGAGCUAGAGA-AGGUA&UAUUUAUUUUUAGUUCUAAGA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN36675_c0_g1_32_TPlot.pdf
TRINITY_DN36675_c0_g1:37	si_s810	TRINITY_DN36675_c0_g1	26	46	37	-27.90	-18.20	0.652329749103943	9.5	1-4,46-43;7-16,40-31	5-6,42-41[SIL];17-21,30-26[UP3]	.....((((((((((..((((&))))..)))))))))).....	GAGCUAGAGAAGGUAUAGAAG&CUUCGUUACCUUUUCUUAAUA	2	0.999999435738506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN36675_c0_g1_37_TPlot.pdf
TRINITY_DN36675_c0_g1:38	si_s70	TRINITY_DN36675_c0_g1	25	47	38	-25.80	-18.40	0.713178294573643	7	1-8,47-40;10-17,38-31;18-21,28-25	9-9,39-39[SIL];x-x,30-29[BULt]	((((..((((((((.((((((((&)))))))).))))))))--))))	GGAGCUAGAGAAGGUAUAGAAGU&ACUUCUAUUUUUUUUCU--UUCC	3	0.999999997035464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN36675_c0_g1_38_TPlot.pdf
TRINITY_DN36675_c0_g1:40	si_s68	TRINITY_DN36675_c0_g1	29	49	40	-23.10	-15.30	0.662337662337662	9	3-10,47-40;12-19,38-31	1-2,49-48[UP5];11-11,39-39[SIL];20-21,30-29[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	CUAGAGAAGGUAUAGAAGUAC&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN36675_c0_g1_40_TPlot.pdf
TRINITY_DN36677_c0_g2:1407	si_s170	TRINITY_DN36677_c0_g2	1396	1418	1407	-43.20	-29.80	0.689814814814815	8.5	2-4,1417-1415;5-9,1413-1409;11-21,1406-1396	1-1,1418-1418[UP5];x-x,1414-1414[BULt];10-10,1408-1407[AILt]	(((((((((((..(((((.(((.&.)))-)))))-.)))))))))))	CUCGGGCGUCUCCUAUCCGCUGA&CCAG-GGGUA-AAGAUGCCCGAG	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s170_TRINITY_DN36677_c0_g2_1407_TPlot.pdf
TRINITY_DN36677_c0_g2:2081	si_s67	TRINITY_DN36677_c0_g2	2068	2090	2081	-25.60	-20.00	0.78125	8	1-14,2090-2077;15-19,2074-2070	x-x,2076-2075[BULt];20-21,2069-2068[UP3]	..(((((..((((((((((((((&))))))))))))))--)))))..	CUGAAAAUCGGGAUGGAGGUUGC&GCAACUUCUAUUUU--UUUUCUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN36677_c0_g2_2081_TPlot.pdf
TRINITY_DN36677_c0_g2:2381	si_s896	TRINITY_DN36677_c0_g2	2370	2390	2381	-31.60	-21.70	0.686708860759494	10	2-14,2389-2377	1-1,2390-2390[UP5];15-21,2376-2370[UP3]	.......(((((((((((((.&.))))))))))))).......	GCAACAGGAGGAGAAGGCCUU&UAGGCUUUCUCUUCAAUUUCA	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN36677_c0_g2_2381_TPlot.pdf
TRINITY_DN36677_c0_g2:2389	si_s888	TRINITY_DN36677_c0_g2	2378	2398	2389	-26.80	-18.10	0.675373134328358	18	10-21,2389-2378	1-9,2398-2390[UP5]	((((((((((((.........&.........))))))))))))	AGGAGAAGGCCUUCUGUCCCG&AAAAUAAAUAGGCUUUCUCUU	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN36677_c0_g2_2389_TPlot.pdf
TRINITY_DN36677_c0_g2:3985	si_a866	TRINITY_DN36677_c0_g2	3974	3994	3985	-23.30	-16.00	0.686695278969957	8.5	2-9,3993-3986;12-21,3983-3974	1-1,3994-3994[UP5];10-11,3985-3984[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	CAACUGAAUCCAUGAUGGUUU&CAAUUAUUAAAGAUUUAGUUG	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN36677_c0_g2_3985_TPlot.pdf
TRINITY_DN3668_c0_g1:2443	si_a498	TRINITY_DN3668_c0_g1	2432	2452	2443	-33.50	-21.90	0.653731343283582	5.5	1-10,2452-2443;11-13,2441-2439;16-21,2437-2432	x-x,2442-2442[BULt];14-15,2438-2438[AILq]	((((((.-(((.((((((((((&))))))))))-)))..))))))	CAGGGAC-ACGAAGAAACGACA&UGUCGUUUUU-CGUCUUCCUUG	2	0.999999999732561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3668_c0_g1_2443_TPlot.pdf
TRINITY_DN3668_c0_g1:2460	si_a183	TRINITY_DN3668_c0_g1	2449	2469	2460	-30.10	-21.10	0.700996677740864	10.5	4-8,2466-2462;11-21,2459-2449	1-3,2469-2467[UP5];9-10,2461-2460[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GACAGGGAAGGUGAUUAUAUC&UAGAUAAUAUCUUUCCCUGUU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN3668_c0_g1_2460_TPlot.pdf
TRINITY_DN3668_c0_g1:458	si_a399	TRINITY_DN3668_c0_g1	447	467	458	-22.60	-14.70	0.650442477876106	6.5	1-4,467-464;6-15,462-453;17-20,451-448	5-5,463-463[SIL];16-16,452-452[SIL];21-21,447-447[UP3]	.((((.((((((((((.((((&)))).)))))))))).)))).	CUGAAGAAAACGAUUCGAUGU&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999996651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3668_c0_g1_458_TPlot.pdf
TRINITY_DN3668_c0_g1:776	si_s743	TRINITY_DN3668_c0_g1	765	785	776	-29.00	-19.90	0.686206896551724	7	1-5,785-781;7-19,779-767	6-6,780-780[SIL];20-21,766-765[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UAUUAGGGUCAGUUUCUUCAU&GUGAAUAGAUUGACCUUAAAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN3668_c0_g1_776_TPlot.pdf
TRINITY_DN366_c0_g1:3648	si_s82	TRINITY_DN366_c0_g1	3631	3657	3648	-28.90	-19.30	0.667820069204152	16	1-11,3657-3647;12-14,3640-3638;16-21,3636-3631	x-x,3646-3641[BULt];15-15,3637-3637[SIL]	((((((.(((......(((((((((((&)))))))))))------))).))))))	GAGAAGUAGAGUCAAAGAGGAAAGAGG&UUUCUUUCCUU------UCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN366_c0_g1_3648_TPlot.pdf
TRINITY_DN366_c0_g1:4573	si_s80	TRINITY_DN366_c0_g1	4561	4584	4573	-28.20	-18.80	0.666666666666667	10.5	3-8,4582-4577;9-10,4574-4573;11-21,4571-4561	1-2,4584-4583[UP5];x-x,4576-4575[BULt];x-x,4572-4572[BULt]	(((((((((((.((..((((((..&..))))))--))-)))))))))))	GAAGAGGAAAGUGACAAAGGAACU&UUUUUCUU--UC-CUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN366_c0_g1_4573_TPlot.pdf
TRINITY_DN36707_c0_g1:172	si_a68	TRINITY_DN36707_c0_g1	161	181	172	-25.40	-17.30	0.681102362204724	7	1-10,181-172;12-19,170-163	11-11,171-171[SIL];20-21,162-161[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	CAAAGAACGAAUUGAAAGGGG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999996100949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN36707_c0_g1_172_TPlot.pdf
TRINITY_DN36708_c0_g1:889	si_s79	TRINITY_DN36708_c0_g1	871	898	889	-26.20	-18.10	0.690839694656489	10.5	1-15,898-884;16-21,876-871	x-x,883-877[BULt]	((((((.......(((((((((((((((&)))))))))))))))-------))))))	GGGAGGCGUCCGAAAAGGAAAGGGAAAA&UUUUUUCUUUCCUUU-------CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN36708_c0_g1_889_TPlot.pdf
TRINITY_DN36708_c0_g1:894	si_s74	TRINITY_DN36708_c0_g1	883	902	894	-25.00	-16.80	0.672	7	1-2,902-901;4-20,900-884	3-3,x-x[BULq];21-21,883-883[UP3]	.(((((((((((((((((-((&)).))))))))))))))))).	AAAAGGAAAGGGAAAAGG-AG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN36708_c0_g1_894_TPlot.pdf
TRINITY_DN36708_c0_g1:963	si_a62	TRINITY_DN36708_c0_g1	951	973	963	-32.20	-21.70	0.673913043478261	7	1-4,973-970;5-11,968-962;12-14,960-958;17-21,955-951	x-x,969-969[BULt];x-x,961-961[BULt];15-16,957-956[SIL]	(((((..(((.(((((((.((((&))))-)))))))-)))..)))))	ACAAUAGGAGAAGAAGCGAAGUC&GACU-CGCUUCU-UUCAAAUUGU	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN36708_c0_g1_963_TPlot.pdf
TRINITY_DN36708_c0_g1:965	si_a60	TRINITY_DN36708_c0_g1	954	975	965	-32.20	-22.00	0.683229813664596	8.5	1-6,975-970;7-15,968-960	x-x,969-969[BULt];16-21,959-954[UP3]	......(((((((((.((((((&))))))-)))))))))......	AUAGGAGAAGAAGCGAAGUCGA&UCGACU-CGCUUCUUUCAAAUU	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN36708_c0_g1_965_TPlot.pdf
TRINITY_DN3670_c0_g1:1380	si_a61	TRINITY_DN3670_c0_g1	1367	1389	1380	-32.90	-23.20	0.70516717325228	8.5	1-13,1389-1377;14-15,1374-1373	x-x,1376-1375[BULt];16-21,1372-1367[UP3]	......((..(((((((((((((&)))))))))))))--))......	GUGUACGAUCGAGAAGCGAGUCG&CGACUCGCUUCUU--UCAAAUUG	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN3670_c0_g1_1380_TPlot.pdf
TRINITY_DN3670_c0_g1:1381	si_a60	TRINITY_DN3670_c0_g1	1368	1390	1381	-32.20	-24.60	0.763975155279503	7.5	1-14,1390-1377;15-16,1374-1373	x-x,1376-1375[BULt];17-21,1372-1368[UP3]	.....((..((((((((((((((&))))))))))))))--)).....	UGUACGAUCGAGAAGCGAGUCGA&UCGACUCGCUUCUU--UCAAAUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN3670_c0_g1_1381_TPlot.pdf
TRINITY_DN3670_c0_g1:1563	si_s76	TRINITY_DN3670_c0_g1	1551	1572	1563	-23.60	-16.80	0.711864406779661	10	1-12,1572-1561;14-20,1558-1552	13-13,1560-1559[AILt];21-21,1551-1551[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	UGGAAGGGUCAGGGAAAGGAGU&AUUUUUUUUCUU-UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3670_c0_g1_1563_TPlot.pdf
TRINITY_DN3670_c0_g1:192	si_a258	TRINITY_DN3670_c0_g1	180	201	192	-38.60	-27.20	0.704663212435233	9	1-5,201-197;7-8,195-194;10-16,192-186;18-21,183-180	6-6,196-196[SIL];9-9,193-193[SIL];17-17,185-184[AILt]	((((..(((((((.((.(((((&))))).)).)))))))-.))))	GGCGGCUUGCCCUGGGGGCAGU&AUUGUAUCGAGGGCAA-ACGCC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN3670_c0_g1_192_TPlot.pdf
TRINITY_DN3670_c0_g1:372	si_a130	TRINITY_DN3670_c0_g1	361	381	372	-26.60	-17.90	0.672932330827068	6	1-7,381-375;9-18,373-364;20-21,362-361	8-8,374-374[SIL];19-19,363-363[SIL]	((.((((((((((.(((((((&))))))).)))))))))).))	UGUUUAAUUGCUAAUGCUGUG&UAUAGCAAUAGUAAUUAAUCG	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a130_TRINITY_DN3670_c0_g1_372_TPlot.pdf
TRINITY_DN3670_c0_g1:373	si_a129	TRINITY_DN3670_c0_g1	362	382	373	-25.20	-17.40	0.69047619047619	7.5	2-8,381-375;10-19,373-364	1-1,382-382[UP5];9-9,374-374[SIL];20-21,363-362[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	GUUUAAUUGCUAAUGCUGUGU&UUAUAGCAAUAGUAAUUAAUC	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN3670_c0_g1_373_TPlot.pdf
TRINITY_DN3670_c0_g1:3741	si_a569	TRINITY_DN3670_c0_g1	3730	3751	3741	-34.20	-22.40	0.654970760233918	7.5	1-5,3751-3747;6-6,3745-3745;8-12,3743-3739;14-20,3737-3731	x-x,3746-3746[BULt];7-7,3744-3744[SIL];13-13,3738-3738[SIL];21-21,3730-3730[UP3]	.(((((((.(((((.(.(((((&)))))-).))))).))))))).	GACAAGCAAGCGAUCCAACGGG&CCCGU-GAAUCGUAUGUUUGUA	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN3670_c0_g1_3741_TPlot.pdf
TRINITY_DN3670_c0_g1:375	si_a127	TRINITY_DN3670_c0_g1	364	384	375	-23.10	-17.30	0.748917748917749	9.5	4-10,381-375;12-21,373-364	1-3,384-382[UP5];11-11,374-374[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUAAUUGCUAAUGCUGUGUGC&UUUUAUAGCAAUAGUAAUUAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN3670_c0_g1_375_TPlot.pdf
TRINITY_DN3670_c0_g1:3751	si_a429	TRINITY_DN3670_c0_g1	3740	3760	3751	-32.00	-20.90	0.653125	16	8-19,3753-3742	1-7,3760-3754[UP5];20-21,3741-3740[UP3]	..((((((((((((.......&.......))))))))))))..	CGAUCCAACGGGUCAUCAAGC&AAUAUAGGAUCCGUUGGAUAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN3670_c0_g1_3751_TPlot.pdf
TRINITY_DN3670_c0_g1:3752	si_a428	TRINITY_DN3670_c0_g1	3741	3761	3752	-31.80	-20.90	0.657232704402516	17	9-20,3753-3742	1-8,3761-3754[UP5];21-21,3741-3741[UP3]	.((((((((((((........&........)))))))))))).	GAUCCAACGGGUCAUCAAGCU&AAAUAUAGGAUCCGUUGGAUA	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN3670_c0_g1_3752_TPlot.pdf
TRINITY_DN3670_c0_g1:376	si_a126	TRINITY_DN3670_c0_g1	365	384	376	-24.70	-17.20	0.696356275303644	9.5	1-2,384-383;5-11,381-375;13-21,373-365	3-4,382-382[AILq];12-12,374-374[SIL]	(((((((((.(((((((.-((&))..))))))).)))))))))	UAAUUGCUAAUGCUGUGU-GC&GUUUUAUAGCAAUAGUAAUUA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN3670_c0_g1_376_TPlot.pdf
TRINITY_DN3670_c0_g1:386	si_a123	TRINITY_DN3670_c0_g1	374	395	386	-26.60	-18.30	0.68796992481203	8	1-10,395-386;12-14,384-382;15-20,380-375	11-11,385-385[SIL];x-x,381-381[BULt];21-21,374-374[UP3]	.((((((.(((.((((((((((&)))))))))).)))-)))))).	AUGCUGUGUGCGAUAGGGCAAG&CUUGUUUUAUAGCA-AUAGUAA	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN3670_c0_g1_386_TPlot.pdf
TRINITY_DN3670_c0_g1:601	si_a557	TRINITY_DN3670_c0_g1	589	615	601	-33.40	-22.50	0.673652694610778	16	2-9,614-607;10-17,601-594;18-21,592-589	1-1,615-615[UP5];x-x,606-602[BULt];x-x,593-593[BULt]	((((.((((((((.....((((((((.&.))))))))-----))))))))-))))	GUUCUGCGGGGAGUUCGGGUAAGGAGC&UUUCUUUAU-----CUCCCCGU-GAAU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN3670_c0_g1_601_TPlot.pdf
TRINITY_DN3670_c0_g1:6489	si_s434	TRINITY_DN3670_c0_g1	6478	6499	6489	-21.50	-14.50	0.674418604651163	9	1-3,6499-6497;4-5,6495-6494;7-20,6492-6479	x-x,6496-6496[BULt];6-6,6493-6493[SIL];21-21,6478-6478[UP3]	.((((((((((((((.((.(((&)))-)).)))))))))))))).	GGUAUGGUGUGUGAUCGUCUGU&ACA-AUAAUUACAUAUUAUAUA	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN3670_c0_g1_6489_TPlot.pdf
TRINITY_DN3671_c0_g1:697	si_a493	TRINITY_DN3671_c0_g1	686	706	697	-29.50	-19.40	0.657627118644068	8	1-16,706-691;18-21,689-686	17-17,690-690[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	AGGAGGAAGGAUGGUGUGUUC&GAAUAUGUCGUUUUUCGUCUU	3	0.999999855462075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN3671_c0_g1_697_TPlot.pdf
TRINITY_DN3672_c0_g1:2147	si_s312	TRINITY_DN3672_c0_g1	2136	2159	2147	-29.00	-18.90	0.651724137931034	10.5	1-8,2159-2152;9-18,2148-2139	x-x,2151-2149[BULt];19-21,2138-2136[UP3]	...((((((((((...((((((((&))))))))---))))))))))...	AUUCAGGAAGGAUACAAGAAUUUU&AAAAUUCU---GUCCUUCUUGUUA	2	0.999999997487086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3672_c0_g1_2147_TPlot.pdf
TRINITY_DN3672_c0_g1:2650	si_s97	TRINITY_DN3672_c0_g1	2637	2659	2650	-36.30	-24.10	0.663911845730028	8	2-13,2658-2647;14-19,2644-2639	1-1,2659-2659[UP5];x-x,2646-2645[BULt];20-21,2638-2637[UP3]	..((((((..((((((((((((.&.))))))))))))--))))))..	AGCCGAUUUUCGAAGCGGAGAGU&CUUCUUCGCUUCG--GAUUGGAA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN3672_c0_g1_2650_TPlot.pdf
TRINITY_DN3672_c0_g1:2710	si_s40	TRINITY_DN3672_c0_g1	2699	2719	2710	-24.30	-16.30	0.670781893004115	10	5-21,2715-2699	1-4,2719-2716[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGUUCGAUUAUUGAAAAGA&AAUCUUUAAUAAUUGGAUUUC	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN3672_c0_g1_2710_TPlot.pdf
TRINITY_DN3672_c0_g1:3085	si_s76	TRINITY_DN3672_c0_g1	3075	3094	3085	-23.60	-16.10	0.682203389830509	8.5	1-6,3094-3089;9-12,3086-3083;14-20,3082-3076	7-8,3088-3087[SIL];13-13,x-x[BULq];21-21,3075-3075[UP3]	.(((((((-((((..((((((&))))))..)))).))))))).	UAGAGAGG-AAGAUUAGAGAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3672_c0_g1_3085_TPlot.pdf
TRINITY_DN3672_c0_g1:3087	si_s74	TRINITY_DN3672_c0_g1	3077	3096	3087	-25.00	-18.80	0.752	7.5	1-8,3096-3089;11-14,3086-3083;16-21,3082-3077	9-10,3088-3087[SIL];15-15,x-x[BULq]	((((((-((((..((((((((&))))))))..)))).))))))	GAGAGG-AAGAUUAGAGAUAG&CUAUUUUUUUUCUUUCCUUUC	2	0.999384461095691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3672_c0_g1_3087_TPlot.pdf
TRINITY_DN3672_c0_g1:3088	si_s73	TRINITY_DN3672_c0_g1	3076	3097	3088	-24.00	-15.80	0.658333333333333	9	2-9,3096-3089;12-17,3086-3081;18-21,3079-3076	1-1,3097-3097[UP5];10-11,3088-3087[SIL];x-x,3080-3080[BULt]	((((.((((((..((((((((.&.))))))))..))))))-))))	AGAGAGGAAGAUUAGAGAUAGU&UCUAUUUUUUUUCUUUC-CUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3672_c0_g1_3088_TPlot.pdf
TRINITY_DN3672_c0_g1:3295	si_a600	TRINITY_DN3672_c0_g1	3283	3304	3295	-29.70	-19.70	0.663299663299663	9	1-2,3304-3303;5-10,3300-3295;11-19,3293-3285	3-4,3302-3301[SIL];x-x,3294-3294[BULt];20-21,3284-3283[UP3]	..(((((((((.((((((..((&))..))))))-)))))))))..	AAUGGAAUUGCUGAAGAUCAUG&CAGAAUUUUC-GCAAUUCCAAU	2	0.946990870446739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN3672_c0_g1_3295_TPlot.pdf
TRINITY_DN3672_c0_g1:3296	si_a599	TRINITY_DN3672_c0_g1	3284	3305	3296	-30.40	-19.90	0.654605263157895	9	2-3,3304-3303;6-11,3300-3295;12-20,3293-3285	1-1,3305-3305[UP5];4-5,3302-3301[SIL];x-x,3294-3294[BULt];21-21,3284-3284[UP3]	.(((((((((.((((((..((.&.))..))))))-))))))))).	AUGGAAUUGCUGAAGAUCAUGG&ACAGAAUUUUC-GCAAUUCCAA	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN3672_c0_g1_3296_TPlot.pdf
TRINITY_DN3672_c0_g1:3297	si_a323	TRINITY_DN3672_c0_g1	3284	3306	3297	-26.80	-17.98	0.67089552238806	11	2-12,3305-3295;15-19,3290-3286	1-1,3306-3306[UP5];13-14,3294-3291[AILt];20-21,3285-3284[UP3]	..(((((....(((((((((((.&.)))))))))))--..)))))..	AUGGAAUUGCUGAAGAUCAUGGC&UCCAUGAUUUUU--UUAUUCCUU	4	0.99999952162128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3672_c0_g1_3297_TPlot.pdf
TRINITY_DN3672_c0_g1:3298	si_a322	TRINITY_DN3672_c0_g1	3285	3307	3298	-27.00	-17.98	0.665925925925926	9.5	3-13,3305-3295;16-20,3290-3286	1-2,3307-3306[UP5];14-15,3294-3291[AILt];21-21,3285-3285[UP3]	.(((((....(((((((((((..&..)))))))))))--..))))).	UGGAAUUGCUGAAGAUCAUGGCG&AUCCAUGAUUUUU--UUAUUCCU	2	0.999763926147321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN3672_c0_g1_3298_TPlot.pdf
TRINITY_DN3672_c0_g1:3299	si_a321	TRINITY_DN3672_c0_g1	3286	3308	3299	-26.70	-17.58	0.658426966292135	10.5	4-14,3305-3295;17-21,3290-3286	1-3,3308-3306[UP5];15-16,3294-3291[AILt]	(((((....(((((((((((...&...)))))))))))--..)))))	GGAAUUGCUGAAGAUCAUGGCGA&UAUCCAUGAUUUUU--UUAUUCC	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN3672_c0_g1_3299_TPlot.pdf
TRINITY_DN3672_c0_g1:3305	si_a315	TRINITY_DN3672_c0_g1	3294	3314	3305	-27.00	-17.60	0.651851851851852	9	1-1,3314-3314;3-7,3312-3308;10-20,3305-3295	2-2,3313-3313[SIL];8-9,3307-3306[SIL];21-21,3294-3294[UP3]	.(((((((((((..(((((.(&).)))))..))))))))))).	UGAAGAUCAUGGCGAGAUCGA&UGGAUUUAUCCAUGAUUUUUU	4	0.999999963762016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN3672_c0_g1_3305_TPlot.pdf
TRINITY_DN3672_c0_g1:4371	si_s883	TRINITY_DN3672_c0_g1	4360	4381	4371	-24.30	-16.90	0.695473251028807	7.5	1-6,4381-4376;8-12,4373-4369;14-21,4367-4360	7-7,4375-4374[AILt];13-13,4368-4368[SIL]	((((((((.(((((..((((((&))))))-.))))).))))))))	GAGGCCUGCUUAUUGGUUGGUU&AACUAA-AAAUAAAUAGGCUUU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN3672_c0_g1_4371_TPlot.pdf
TRINITY_DN3673_c0_g1:138	si_a344	TRINITY_DN3673_c0_g1	126	147	138	-28.50	-18.68	0.655438596491228	10	1-10,147-138;16-21,131-126	11-15,137-132[AILt]	((((((......((((((((((&))))))))))-.....))))))	UAGAAUGAAGGUUUUUUGGGAC&GUCCCGAAAA-UAUUAAUUCUA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN3673_c0_g1_138_TPlot.pdf
TRINITY_DN3673_c0_g1:1534	si_a329	TRINITY_DN3673_c0_g1	1523	1545	1534	-29.60	-19.30	0.652027027027027	9.5	2-7,1544-1539;8-19,1536-1525	1-1,1545-1545[UP5];x-x,1538-1537[BULt];20-21,1524-1523[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	AUGGGCAAGGAAUACCAGAGAAG&AUUUUUU--UAUUCCUUGUCCCG	3	0.999999999825777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3673_c0_g1_1534_TPlot.pdf
TRINITY_DN3673_c0_g1:1536	si_a327	TRINITY_DN3673_c0_g1	1525	1547	1536	-28.40	-19.30	0.679577464788732	11.5	4-9,1544-1539;10-21,1536-1525	1-3,1547-1545[UP5];x-x,1538-1537[BULt]	((((((((((((..((((((...&...))))))--))))))))))))	GGGCAAGGAAUACCAGAGAAGGA&UGAUUUUUU--UAUUCCUUGUCC	3	0.999997278599856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN3673_c0_g1_1536_TPlot.pdf
TRINITY_DN36756_c0_g4:14	si_a763	TRINITY_DN36756_c0_g4	3	24	14	-28.80	-19.70	0.684027777777778	9.5	2-5,23-20;6-8,18-16;10-20,14-4	1-1,24-24[UP5];x-x,19-19[BULt];9-9,15-15[SIL];21-21,3-3[UP3]	.(((((((((((.(((.((((.&.))))-))).))))))))))).	AGGAUCGGUCAACGACUCCAGC&UUUGG-GUUUUUGAUUGAUUCA	4	0.999994304191659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN36756_c0_g4_14_TPlot.pdf
TRINITY_DN36757_c0_g1:336	si_a233	TRINITY_DN36757_c0_g1	325	345	336	-28.90	-19.86	0.68719723183391	8.5	1-9,345-337;14-21,332-325	10-13,336-333[SIL]	((((((((....(((((((((&)))))))))....))))))))	GGAUCGAAGAUUUUAUGGAAG&UUUCUAUAAUCAAUUCGAUCC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN36757_c0_g1_336_TPlot.pdf
TRINITY_DN36757_c0_g1:505	si_s68	TRINITY_DN36757_c0_g1	494	514	505	-23.10	-15.50	0.670995670995671	10	5-21,510-494	1-4,514-511[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGGGAGAAAUGGAAAAUC&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN36757_c0_g1_505_TPlot.pdf
TRINITY_DN3675_c0_g1:1334	si_a316	TRINITY_DN3675_c0_g1	1323	1343	1334	-26.30	-18.50	0.703422053231939	9.5	1-10,1343-1334;12-18,1332-1326	11-11,1333-1333[SIL];19-21,1325-1323[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AUCAGAGUUGAGGAUGAGUCC&GGAUUUAUCCAUGAUUUUUUU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN3675_c0_g1_1334_TPlot.pdf
TRINITY_DN3675_c0_g1:1336	si_a314	TRINITY_DN3675_c0_g1	1325	1345	1336	-27.10	-19.90	0.734317343173432	6.5	1-12,1345-1334;14-20,1332-1326	13-13,1333-1333[SIL];21-21,1325-1325[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CAGAGUUGAGGAUGAGUCCAG&UUGGAUUUAUCCAUGAUUUUU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3675_c0_g1_1336_TPlot.pdf
TRINITY_DN3675_c0_g1:1337	si_a313	TRINITY_DN3675_c0_g1	1326	1346	1337	-28.70	-20.00	0.696864111498258	7	2-13,1345-1334;15-21,1332-1326	1-1,1346-1346[UP5];14-14,1333-1333[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AGAGUUGAGGAUGAGUCCAGC&CUUGGAUUUAUCCAUGAUUUU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN3675_c0_g1_1337_TPlot.pdf
TRINITY_DN3675_c0_g1:6243	si_a23	TRINITY_DN3675_c0_g1	6232	6252	6243	-22.80	-15.20	0.666666666666667	12	3-17,6250-6236	1-2,6252-6251[UP5];18-21,6235-6232[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGCGGAGCUGGAGAUGAAGG&UAUUUAUUUUUAGUUCUAAGA	4	0.999997885333129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN3675_c0_g1_6243_TPlot.pdf
TRINITY_DN3675_c0_g1:6244	si_a22	TRINITY_DN3675_c0_g1	6233	6254	6244	-23.50	-15.50	0.659574468085106	12	1-2,6254-6253;4-18,6250-6236	3-3,6252-6251[AILt];19-21,6235-6233[UP3]	...(((((((((((((((..((&))-.)))))))))))))))...	AGCGGAGCUGGAGAUGAAGGAG&CU-AUUUAUUUUUAGUUCUAAG	4	0.999996383167557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN3675_c0_g1_6244_TPlot.pdf
TRINITY_DN3675_c0_g1:6247	si_a19	TRINITY_DN3675_c0_g1	6236	6261	6247	-27.00	-18.10	0.67037037037037	19	2-4,6260-6258;7-21,6250-6236	1-1,6261-6261[UP5];5-6,6257-6251[AILt]	(((((((((((((((.......(((.&.)))-----..)))))))))))))))	GGAGCUGGAGAUGAAGGAGAGUGGCC&AGCC-----UAUUUAUUUUUAGUUCU	3	0.999971513383237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN3675_c0_g1_6247_TPlot.pdf
TRINITY_DN3675_c0_g1:7424	si_s78	TRINITY_DN3675_c0_g1	7412	7434	7424	-26.20	-17.60	0.67175572519084	7	1-8,7434-7427;9-18,7425-7416;19-21,7414-7412	x-x,7426-7426[BULt];x-x,7415-7415[BULt]	(((.((((((((((.((((((((&))))))))-))))))))))-)))	AGACGGGGGGGAAGCGAAAAGAA&UUUUUUUC-UUUCCUUUCU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3675_c0_g1_7424_TPlot.pdf
TRINITY_DN36765_c0_g1:1151	si_a399	TRINITY_DN36765_c0_g1	1135	1160	1151	-22.60	-14.80	0.654867256637168	9.5	1-9,1160-1152;11-14,1150-1147;15-21,1141-1135	10-10,1151-1151[SIL];x-x,1146-1142[BULt]	(((((((.....((((.(((((((((&))))))))).))))-----)))))))	AUAAACAAUCCCGAACUGUUCUAUGU&AUAUAGAAUUGUUU-----UGUUUAU	4	0.999999999974148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN36765_c0_g1_1151_TPlot.pdf
TRINITY_DN36765_c0_g1:929	si_s186	TRINITY_DN36765_c0_g1	918	937	929	-31.90	-22.00	0.689655172413793	4	1-9,937-929;11-21,928-918	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	UCUAAGAUAAU-GUUAUUCGG&CCGAGUAACGAUUAUUUUGGA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN36765_c0_g1_929_TPlot.pdf
TRINITY_DN36765_c1_g2:325	si_s714	TRINITY_DN36765_c1_g2	314	334	325	-31.50	-21.60	0.685714285714286	4.5	1-16,334-319;18-21,317-314	17-17,318-318[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	AUGACGUUUUUCUUUGUUCAC&GUGAACAGGGAAAGAUAUUAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s714_TRINITY_DN36765_c1_g2_325_TPlot.pdf
TRINITY_DN3676_c0_g1:4795	si_a832	TRINITY_DN3676_c0_g1	4784	4804	4795	-23.10	-16.00	0.692640692640693	3.5	1-19,4804-4786	20-21,4785-4784[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUAUUUUUGUUUUUUUUCUUU&AAAGAAAAAAAAUAGAAGUUG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a832_TRINITY_DN3676_c0_g1_4795_TPlot.pdf
TRINITY_DN3676_c0_g1:4796	si_a831	TRINITY_DN3676_c0_g1	4785	4805	4796	-23.40	-16.40	0.700854700854701	3.5	2-20,4804-4786	1-1,4805-4805[UP5];21-21,4785-4785[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UAUUUUUGUUUUUUUUCUUUG&GAAAGAAAAAAAAUAGAAGUU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a831_TRINITY_DN3676_c0_g1_4796_TPlot.pdf
TRINITY_DN36780_c0_g1:1012	si_s68	TRINITY_DN36780_c0_g1	1001	1021	1012	-23.10	-15.20	0.658008658008658	9	4-8,1018-1014;10-21,1012-1001	1-3,1021-1019[UP5];9-9,1013-1013[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAAGAAAAAGAGGAGAAA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN36780_c0_g1_1012_TPlot.pdf
TRINITY_DN36780_c0_g1:1566	si_a317	TRINITY_DN36780_c0_g1	1552	1575	1566	-24.30	-15.90	0.654320987654321	11	3-12,1573-1564;13-21,1560-1552	1-2,1575-1574[UP5];x-x,1563-1561[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	UGAAGAAAUGGACAUGGAUGAAGA&GAUUUAUCCAUG---AUUUUUUUA	4	0.999999999985496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN36780_c0_g1_1566_TPlot.pdf
TRINITY_DN36780_c0_g1:2181	si_a309	TRINITY_DN36780_c0_g1	2169	2190	2181	-33.60	-22.50	0.669642857142857	6.5	1-11,2190-2180;13-15,2178-2176;16-21,2174-2169	12-12,2179-2179[SIL];x-x,2175-2175[BULt]	((((((.(((.(((((((((((&))))))))))).)))-))))))	UUAUGGAAUAUGUUCAAGCGGA&UUCGCUUGGAUUUAU-CCAUGA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN36780_c0_g1_2181_TPlot.pdf
TRINITY_DN36780_c0_g1:2866	si_s307	TRINITY_DN36780_c0_g1	2855	2876	2866	-32.90	-22.90	0.696048632218845	7.5	1-6,2876-2871;7-19,2869-2857	x-x,2870-2870[BULt];20-21,2856-2855[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	CUGAGGACGGAGUUUAUUGCAG&UUGCGA-AAAUUCUGUCCUUCU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN36780_c0_g1_2866_TPlot.pdf
TRINITY_DN36780_c0_g1:664	si_s80	TRINITY_DN36780_c0_g1	656	673	664	-28.20	-18.40	0.652482269503546	7	1-10,673-664;14-21,663-656	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	GAAGAAGA---GGAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN36780_c0_g1_664_TPlot.pdf
TRINITY_DN36780_c0_g1:668	si_s76	TRINITY_DN36780_c0_g1	657	677	668	-23.60	-16.50	0.699152542372881	4	2-14,676-664;16-21,662-657	1-1,677-677[UP5];15-15,663-663[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAAGAGGAAGAAGAAAAAC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN36780_c0_g1_668_TPlot.pdf
TRINITY_DN36780_c0_g1:788	si_s73	TRINITY_DN36780_c0_g1	773	798	788	-24.00	-16.20	0.675	8	1-8,798-791;9-15,789-783;16-21,778-773	x-x,790-790[BULt];x-x,782-779[BULt]	((((((....(((((((.((((((((&))))))))-)))))))----))))))	GAAGGAGAUAAGGAAGACAAAAUAGA&UCUAUUUU-UUUUCUU----UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN36780_c0_g1_788_TPlot.pdf
TRINITY_DN36780_c0_g1:789	si_s72	TRINITY_DN36780_c0_g1	774	799	789	-24.10	-16.00	0.663900414937759	7.5	1-9,799-791;10-16,789-783;17-21,778-774	x-x,790-790[BULt];x-x,782-779[BULt]	(((((....(((((((.(((((((((&)))))))))-)))))))----)))))	AAGGAGAUAAGGAAGACAAAAUAGAA&UUCUAUUUU-UUUUCUU----UCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN36780_c0_g1_789_TPlot.pdf
TRINITY_DN36796_c0_g1:82	si_a193	TRINITY_DN36796_c0_g1	71	91	82	-30.90	-22.60	0.731391585760518	10	4-19,88-73	1-3,91-89[UP5];20-21,72-71[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGUGUUGGUGAAUGGGGACGA&CUUUCCCUGUUCACUAAUAAA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN36796_c0_g1_82_TPlot.pdf
TRINITY_DN36796_c0_g2:144	si_s206	TRINITY_DN36796_c0_g2	132	154	144	-33.00	-22.90	0.693939393939394	8.5	2-5,153-150;6-11,148-143;12-19,141-134	1-1,154-154[UP5];x-x,149-149[BULt];x-x,142-142[BULt];20-21,133-132[UP3]	..((((((((.((((((.((((.&.))))-))))))-))))))))..	GACGGACACACACUGGUGGCAUC&AAUGU-ACCAGU-UGUGUUCGAA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN36796_c0_g2_144_TPlot.pdf
TRINITY_DN3679_c0_g1:619	si_a870	TRINITY_DN3679_c0_g1	608	628	619	-24.80	-16.20	0.653225806451613	6.5	1-6,628-623;9-10,620-619;12-21,617-608	7-8,622-621[SIL];11-11,618-618[SIL]	((((((((((.((..((((((&))))))..)).))))))))))	AUUGCAGCUAUAUAGUUAAUA&UAUUAAAGAUUUAGUUGCAAU	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN3679_c0_g1_619_TPlot.pdf
TRINITY_DN3679_c0_g1:622	si_a867	TRINITY_DN3679_c0_g1	611	631	622	-24.10	-15.70	0.651452282157676	5.5	1-9,631-623;12-13,620-619;15-21,617-611	10-11,622-621[SIL];14-14,618-618[SIL]	(((((((.((..(((((((((&)))))))))..)).)))))))	GCAGCUAUAUAGUUAAUAAUU&AAUUAUUAAAGAUUUAGUUGC	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN3679_c0_g1_622_TPlot.pdf
TRINITY_DN36806_c0_g1:93	si_a322	TRINITY_DN36806_c0_g1	82	101	93	-27.00	-18.10	0.67037037037037	8	1-5,101-97;7-9,96-94;12-21,91-82	6-6,x-x[BULq];10-11,93-92[SIL]	((((((((((..(((-(((((&))))).)))..))))))))))	AGGGGUAAAAUUAUC-UGGGU&AUCCAUGAUUUUUUUAUUCCU	2	0.999476415612255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN36806_c0_g1_93_TPlot.pdf
TRINITY_DN36814_c0_g1:363	si_a752	TRINITY_DN36814_c0_g1	351	371	363	-34.80	-23.00	0.660919540229885	8	1-5,371-367;7-14,366-359;16-19,356-353	6-6,x-x[BULq];15-15,358-357[AILt];20-21,352-351[UP3]	..((((..((((((((-(((((&))))).))))))))-.))))..	ACAGCCAGGAAGGAGG-UCGUG&CAUGAACCUCCUUU-GGGUUUU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN36814_c0_g1_363_TPlot.pdf
TRINITY_DN36814_c0_g1:364	si_a751	TRINITY_DN36814_c0_g1	352	372	364	-37.20	-26.30	0.706989247311828	7	1-6,372-367;8-15,366-359;17-20,356-353	7-7,x-x[BULq];16-16,358-357[AILt];21-21,352-352[UP3]	.((((..((((((((-((((((&)))))).))))))))-.)))).	CAGCCAGGAAGGAGG-UCGUGG&CCAUGAACCUCCUUU-GGGUUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN36814_c0_g1_364_TPlot.pdf
TRINITY_DN36820_c0_g1:150	si_a28	TRINITY_DN36820_c0_g1	138	159	150	-30.70	-21.70	0.706840390879479	7	2-13,158-147;14-14,145-145;16-20,143-139	1-1,159-159[UP5];x-x,146-146[BULt];15-15,144-144[SIL];21-21,138-138[UP3]	.(((((.(.((((((((((((.&.))))))))))))-).))))).	UCCGGUGUAUGGAACUGAAGAA&AUUUUUAGUUCUA-AGACCGGU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN36820_c0_g1_150_TPlot.pdf
TRINITY_DN3682_c0_g1:300	si_a204	TRINITY_DN3682_c0_g1	289	309	300	-26.30	-18.20	0.692015209125475	8.5	4-19,306-291	1-3,309-307[UP5];20-21,290-289[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAUUGGUCGAUUUGUUAUCC&CACUAAUAAAUCGACUAAUUA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN3682_c0_g1_300_TPlot.pdf
TRINITY_DN3682_c0_g1:301	si_a203	TRINITY_DN3682_c0_g1	290	310	301	-26.90	-18.20	0.676579925650558	9.5	5-20,306-291	1-4,310-307[UP5];21-21,290-290[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAUUGGUCGAUUUGUUAUCCU&UCACUAAUAAAUCGACUAAUU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN3682_c0_g1_301_TPlot.pdf
TRINITY_DN3682_c0_g1:302	si_a202	TRINITY_DN3682_c0_g1	291	311	302	-27.00	-18.20	0.674074074074074	10.5	6-21,306-291	1-5,311-307[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUGGUCGAUUUGUUAUCCUU&UUCACUAAUAAAUCGACUAAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN3682_c0_g1_302_TPlot.pdf
TRINITY_DN3682_c0_g1:588	si_s821	TRINITY_DN3682_c0_g1	577	597	588	-22.20	-14.70	0.662162162162162	6	1-4,597-594;6-7,592-591;9-21,589-577	5-5,593-593[SIL];8-8,590-590[SIL]	(((((((((((((.((.((((&)))).)).)))))))))))))	UUGUUUUUCAUUGAUGUGAAA&UUUCUUAAUAAUGAAAAACAA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN3682_c0_g1_588_TPlot.pdf
TRINITY_DN3682_c0_g2:315	si_a142	TRINITY_DN3682_c0_g2	303	324	315	-23.50	-15.30	0.651063829787234	8	4-13,321-312;14-21,310-303	1-3,324-322[UP5];x-x,311-311[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	UUAAAAUGCACAGCGAUUACCU&AAUUAAUCGUUGU-UGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN3682_c0_g2_315_TPlot.pdf
TRINITY_DN3683_c0_g1:5797	si_s73	TRINITY_DN3683_c0_g1	5786	5807	5797	-24.00	-15.62	0.650833333333333	15.5	1-5,5807-5803;9-19,5798-5788	6-8,5802-5799[AILt];20-21,5787-5786[UP3]	..(((((((((((....(((((&)))))-...)))))))))))..	UCAGGAGAGGGAGUUCUGUGGA&UCUAU-UUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3683_c0_g1_5797_TPlot.pdf
TRINITY_DN3683_c0_g1:5798	si_s72	TRINITY_DN3683_c0_g1	5787	5808	5798	-24.10	-15.72	0.652282157676349	15	2-6,5807-5803;10-20,5798-5788	1-1,5808-5808[UP5];7-9,5802-5799[AILt];21-21,5787-5787[UP3]	.(((((((((((....(((((.&.)))))-...))))))))))).	CAGGAGAGGGAGUUCUGUGGAC&UUCUAU-UUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3683_c0_g1_5798_TPlot.pdf
TRINITY_DN3683_c0_g1:6464	si_a20	TRINITY_DN3683_c0_g1	6453	6476	6464	-26.70	-17.60	0.659176029962547	13.5	1-4,6476-6473;6-9,6471-6468;10-20,6464-6454	5-5,6472-6472[SIL];x-x,6467-6465[BULt];21-21,6453-6453[UP3]	.(((((((((((...((((.((((&)))).))))---))))))))))).	CGGAACUGGAGACGCUGAGGAGGC&GCCUAUUUA---UUUUUAGUUCUA	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN3683_c0_g1_6464_TPlot.pdf
TRINITY_DN36843_c0_g1:114	si_a784	TRINITY_DN36843_c0_g1	103	124	114	-24.70	-16.50	0.668016194331984	9	3-8,122-117;10-21,114-103	1-2,124-123[UP5];9-9,116-115[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GAAAUAGGAAAGGAAGAAGAAA&ACUCUUCU-AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN36843_c0_g1_114_TPlot.pdf
TRINITY_DN36843_c0_g1:116	si_s78	TRINITY_DN36843_c0_g1	106	125	116	-26.20	-18.00	0.687022900763359	5.5	1-10,125-116;12-19,115-108	11-11,x-x[BULq];20-21,107-106[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	AUAGGAAAGG-AAGAAGAAAA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN36843_c0_g1_116_TPlot.pdf
TRINITY_DN3685_c0_g1:598	si_a502	TRINITY_DN3685_c0_g1	587	607	598	-32.10	-22.90	0.713395638629283	7	1-8,607-600;10-18,598-590	9-9,599-599[SIL];19-21,589-587[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GCCCCAAGGAAGUUGGAAAAC&GUUUUUCGUCUUCCUUGGAAU	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3685_c0_g1_598_TPlot.pdf
TRINITY_DN3685_c0_g1:599	si_a501	TRINITY_DN3685_c0_g1	588	608	599	-33.50	-23.20	0.692537313432836	7	2-9,607-600;11-19,598-590	1-1,608-608[UP5];10-10,599-599[SIL];20-21,589-588[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CCCCAAGGAAGUUGGAAAACC&CGUUUUUCGUCUUCCUUGGAA	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3685_c0_g1_599_TPlot.pdf
TRINITY_DN3685_c0_g1:647	si_s877	TRINITY_DN3685_c0_g1	636	656	647	-22.80	-15.30	0.671052631578947	10	1-13,656-644	14-21,643-636[UP3]	........(((((((((((((&)))))))))))))........	AAUGCCCAUUUAGUUCUGGGA&UCUUAGAACUAAAAAUAAAUA	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s877_TRINITY_DN3685_c0_g1_647_TPlot.pdf
TRINITY_DN3688_c0_g1:2672	si_a882	TRINITY_DN3688_c0_g1	2661	2681	2672	-27.50	-17.98	0.653818181818182	7	1-11,2681-2671;15-18,2667-2664	12-14,2670-2668[SIL];19-21,2663-2661[UP3]	...((((...(((((((((((&)))))))))))...))))...	CUGACUACUCUGAUUGCAACU&AGUUGCAAUCAAUAUAGUAAU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a882_TRINITY_DN3688_c0_g1_2672_TPlot.pdf
TRINITY_DN3688_c0_g1:2674	si_a880	TRINITY_DN3688_c0_g1	2663	2683	2674	-27.80	-18.78	0.675539568345324	6	2-13,2682-2671;17-20,2667-2664	1-1,2683-2683[UP5];14-16,2670-2668[SIL];21-21,2663-2663[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	GACUACUCUGAUUGCAACUGU&UUAGUUGCAAUCAAUAUAGUA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN3688_c0_g1_2674_TPlot.pdf
TRINITY_DN3688_c0_g1:7960	si_s296	TRINITY_DN3688_c0_g1	7947	7969	7960	-31.60	-22.10	0.699367088607595	11	1-3,7969-7967;5-10,7965-7960;11-18,7957-7950	4-4,7966-7966[SIL];x-x,7959-7958[BULt];19-21,7949-7947[UP3]	...((((((((..((((((.(((&))).))))))--))))))))...	AGCUUCGCAAUUCUCCGAUGGGC&GUCGAUUGGA--AUUGCGAAAAU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN3688_c0_g1_7960_TPlot.pdf
TRINITY_DN3688_c0_g1:951	si_a246	TRINITY_DN3688_c0_g1	940	960	951	-38.60	-26.60	0.689119170984456	8.5	2-15,959-946;17-17,944-944	1-1,960-960[UP5];16-16,945-945[SIL];18-21,943-940[UP3]	....(.((((((((((((((.&.)))))))))))))).)....	AAAGAGAGUCGGGGGGUCGGC&UUCGAUCCCCCGAUUGUAUCG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a246_TRINITY_DN3688_c0_g1_951_TPlot.pdf
TRINITY_DN3688_c0_g1:957	si_a240	TRINITY_DN3688_c0_g1	946	966	957	-35.00	-25.50	0.728571428571429	15.5	8-21,959-946	1-7,966-960[UP5]	((((((((((((((.......&.......))))))))))))))	AGUCGGGGGGUCGGCGUCCAG&AAUCAAUUCGAUCCCCCGAUU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a240_TRINITY_DN3688_c0_g1_957_TPlot.pdf
TRINITY_DN36894_c0_g1:837	si_s812	TRINITY_DN36894_c0_g1	826	847	837	-26.40	-17.60	0.666666666666667	9.5	1-5,847-843;6-8,841-839;11-20,836-827	x-x,842-842[BULt];9-10,838-837[SIL];21-21,826-826[UP3]	.((((((((((..(((.(((((&)))))-)))..)))))))))).	UUUAUUGAGAGUUGGUGGACGA&UCGUU-ACCUUUUCUUAAUAAU	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN36894_c0_g1_837_TPlot.pdf
TRINITY_DN36906_c0_g2:1561	si_a552	TRINITY_DN36906_c0_g2	1546	1570	1561	-33.10	-21.80	0.658610271903323	15.5	3-5,1568-1566;7-11,1564-1560;12-21,1555-1546	1-2,1570-1569[UP5];6-6,1565-1565[SIL];x-x,1559-1556[BULt]	((((((((((....(((((.(((..&..))).)))))----))))))))))	CGGGGAGGUGGUUAAAGAAUUGGCC&AUCUAUUUCUU----UAUCUCCCCG	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN36906_c0_g2_1561_TPlot.pdf
TRINITY_DN36916_c0_g1:2197	si_a334	TRINITY_DN36916_c0_g1	2186	2206	2197	-30.70	-21.10	0.687296416938111	13.5	6-17,2201-2190	1-5,2206-2202[UP5];18-21,2189-2186[UP3]	....((((((((((((.....&.....))))))))))))....	AUUGUUGGGACAAGGACCCUA&UUUAUUCCUUGUCCCGAAAAU	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN36916_c0_g1_2197_TPlot.pdf
TRINITY_DN36917_c0_g1:572	si_a328	TRINITY_DN36917_c0_g1	560	581	572	-30.10	-19.88	0.66046511627907	10	1-5,581-577;9-11,573-571;12-21,569-560	6-8,576-574[SIL];x-x,570-570[BULt]	((((((((((.(((...(((((&)))))...)))-))))))))))	GGGGCAAGGAUAUAUAUGAAUU&GAUUUUUUUAU-UCCUUGUCCC	3	0.999999916323541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN36917_c0_g1_572_TPlot.pdf
TRINITY_DN36917_c0_g1:583	si_a329	TRINITY_DN36917_c0_g1	559	592	583	-29.60	-20.00	0.675675675675676	28.5	1-10,592-583;11-20,569-560	x-x,582-570[BULt];21-21,559-559[UP3]	.((((((((((.............((((((((((&))))))))))-------------)))))))))).	GGGGGCAAGGAUAUAUAUGAAUUCAUAAAAAGAU&AUUUUUUUAU-------------UCCUUGUCCCG	2	0.999586680298714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN36917_c0_g1_583_TPlot.pdf
TRINITY_DN36923_c0_g1:733	si_a501	TRINITY_DN36923_c0_g1	722	742	733	-33.50	-22.90	0.683582089552239	11.5	1-6,742-737;9-19,734-724	7-8,736-735[SIL];20-21,723-722[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	CACCGAGGAGGAUCCGAGGCG&CGUUUUUCGUCUUCCUUGGAA	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN36923_c0_g1_733_TPlot.pdf
TRINITY_DN36923_c0_g1:734	si_a500	TRINITY_DN36923_c0_g1	723	743	734	-34.40	-24.50	0.712209302325581	10	1-7,743-737;10-20,734-724	8-9,736-735[SIL];21-21,723-723[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	ACCGAGGAGGAUCCGAGGCGA&UCGUUUUUCGUCUUCCUUGGA	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN36923_c0_g1_734_TPlot.pdf
TRINITY_DN36923_c0_g1:743	si_s93	TRINITY_DN36923_c0_g1	732	751	743	-34.80	-25.30	0.727011494252874	5	1-4,751-748;6-9,746-743;11-21,742-732	5-5,747-747[SIL];10-10,x-x[BULq]	(((((((((((-((((.((((&)))).)))).)))))))))))	GAUCCGAGGCG-AGAACAAGA&UCUUCUUCUUCGCUUCGGAUU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN36923_c0_g1_743_TPlot.pdf
TRINITY_DN3692_c0_g1:1716	si_a712	TRINITY_DN3692_c0_g1	1705	1726	1716	-28.20	-18.60	0.659574468085106	6.5	1-4,1726-1723;5-12,1721-1714;14-21,1712-1705	x-x,1722-1722[BULt];13-13,1713-1713[SIL]	((((((((.((((((((.((((&))))-)))))))).))))))))	GGGUGAUGUUUGUUUUGCGGAU&AUUC-CAAAAUAAUCGUUACUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN3692_c0_g1_1716_TPlot.pdf
TRINITY_DN3693_c0_g1:2079	si_s370	TRINITY_DN3693_c0_g1	2066	2088	2079	-43.70	-29.70	0.679633867276888	7	1-5,2088-2084;8-14,2081-2075;15-19,2073-2069;20-21,2067-2066	6-7,2083-2082[SIL];x-x,2074-2074[BULt];x-x,2068-2068[BULt]	((.(((((.(((((((..(((((&)))))..)))))))-)))))-))	GGUGCACGACGAGCGAGAGGUUU&GAACCGAUCGCUCG-CGUGU-CC	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s370_TRINITY_DN3693_c0_g1_2079_TPlot.pdf
TRINITY_DN3693_c0_g1:2304	si_a876	TRINITY_DN3693_c0_g1	2293	2313	2304	-27.30	-18.00	0.659340659340659	9	2-4,2312-2310;6-17,2308-2297	1-1,2313-2313[UP5];5-5,2309-2309[SIL];18-21,2296-2293[UP3]	....((((((((((((.(((.&.))).))))))))))))....	CGCCUGAUUGCAAUUACGUCG&AGAUUUAGUUGCAAUCAAUAU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN3693_c0_g1_2304_TPlot.pdf
TRINITY_DN3693_c0_g1:2306	si_a874	TRINITY_DN3693_c0_g1	2295	2315	2306	-26.70	-18.00	0.674157303370786	11	4-6,2312-2310;8-19,2308-2297	1-3,2315-2313[UP5];7-7,2309-2309[SIL];20-21,2296-2295[UP3]	..((((((((((((.(((...&...))).))))))))))))..	CCUGAUUGCAAUUACGUCGGA&AAAGAUUUAGUUGCAAUCAAU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN3693_c0_g1_2306_TPlot.pdf
TRINITY_DN3693_c0_g1:2307	si_a873	TRINITY_DN3693_c0_g1	2296	2316	2307	-27.00	-18.00	0.666666666666667	12	5-7,2312-2310;9-20,2308-2297	1-4,2316-2313[UP5];8-8,2309-2309[SIL];21-21,2296-2296[UP3]	.((((((((((((.(((....&....))).)))))))))))).	CUGAUUGCAAUUACGUCGGAC&UAAAGAUUUAGUUGCAAUCAA	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN3693_c0_g1_2307_TPlot.pdf
TRINITY_DN3693_c0_g1:2308	si_a872	TRINITY_DN3693_c0_g1	2297	2317	2308	-27.00	-17.70	0.655555555555556	13	6-8,2312-2310;10-21,2308-2297	1-5,2317-2313[UP5];9-9,2309-2309[SIL]	((((((((((((.(((.....&.....))).))))))))))))	UGAUUGCAAUUACGUCGGACA&UUAAAGAUUUAGUUGCAAUCA	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN3693_c0_g1_2308_TPlot.pdf
TRINITY_DN3693_c0_g1:2351	si_s304	TRINITY_DN3693_c0_g1	2340	2360	2351	-32.30	-21.90	0.678018575851393	5.5	1-4,2360-2357;6-13,2355-2348;15-20,2346-2341	5-5,2356-2356[SIL];14-14,2347-2347[SIL];21-21,2340-2340[UP3]	.((((((.((((((((.((((&)))).)))))))).)))))).	UGGGCAGCAUUUUUGCUAUUC&GAAUUGCGAAAAUUCUGUCCU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN3693_c0_g1_2351_TPlot.pdf
TRINITY_DN3693_c0_g1:4625	si_a110	TRINITY_DN3693_c0_g1	4614	4634	4625	-27.80	-19.20	0.690647482014388	7	1-10,4634-4625;13-14,4622-4621;16-21,4619-4614	11-12,4624-4623[SIL];15-15,4620-4620[SIL]	((((((.((..((((((((((&))))))))))..)).))))))	GAAGCAUGCAAGUAUUUUGUC&GAUAAAAUACGAGCUUGUUUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN3693_c0_g1_4625_TPlot.pdf
TRINITY_DN3693_c0_g1:4930	si_a327	TRINITY_DN3693_c0_g1	4917	4942	4930	-28.40	-18.50	0.651408450704225	13.5	2-7,4941-4936;8-18,4932-4922;19-21,4919-4917	1-1,4942-4942[UP5];x-x,4935-4933[BULt];x-x,4921-4920[BULt]	(((..(((((((((((...((((((.&.))))))---)))))))))))--)))	GGAGCCAGGGAAUAGAAUGGAGGUCG&UGAUUUU---UUUAUUCCUUG--UCC	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN3693_c0_g1_4930_TPlot.pdf
TRINITY_DN3693_c0_g1:5573	si_s626	TRINITY_DN3693_c0_g1	5562	5581	5573	-36.10	-24.20	0.670360110803324	10	3-5,5579-5577;8-21,5575-5562	1-2,5581-5580[UP5];6-7,5576-5576[AILq]	((((((((((((((.-(((..&..)))..))))))))))))))	GCGCUUACGGAAGGC-CGCAG&AAGCGAUCUUUUCGUAGGCGU	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3693_c0_g1_5573_TPlot.pdf
TRINITY_DN3693_c0_g1:5863	si_s87	TRINITY_DN3693_c0_g1	5852	5877	5863	-32.90	-23.90	0.726443768996961	12.5	2-5,5876-5873;6-9,5871-5868;10-21,5863-5852	1-1,5877-5877[UP5];x-x,5872-5872[BULt];x-x,5867-5864[BULt]	((((((((((((....((((.((((.&.))))-))))----))))))))))))	AAGCGAAGGAGAGAUUAGAGAAGGAG&UUCCU-UUCU----UCUUCUUCGCUU	3	0.999998604714447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3693_c0_g1_5863_TPlot.pdf
TRINITY_DN3693_c0_g1:5864	si_s76	TRINITY_DN3693_c0_g1	5852	5873	5864	-23.60	-16.50	0.699152542372881	9.5	2-6,5872-5868;9-18,5865-5856;19-21,5854-5852	1-1,5873-5873[UP5];7-8,5867-5866[SIL];x-x,5855-5855[BULt]	(((.((((((((((..(((((.&.)))))..))))))))))-)))	AAGCGAAGGAGAGAUUAGAGAA&AUUUUUUUUCUUUCCUUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3693_c0_g1_5864_TPlot.pdf
TRINITY_DN3693_c0_g1:5866	si_s74	TRINITY_DN3693_c0_g1	5855	5875	5866	-25.00	-16.70	0.668	11	1-2,5875-5874;4-8,5872-5868;11-20,5865-5856	3-3,5873-5873[SIL];9-10,5867-5866[SIL];21-21,5855-5855[UP3]	.((((((((((..(((((.((&)).)))))..)))))))))).	CGAAGGAGAGAUUAGAGAAGG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3693_c0_g1_5866_TPlot.pdf
TRINITY_DN3693_c0_g1:5867	si_s73	TRINITY_DN3693_c0_g1	5856	5876	5867	-24.00	-18.30	0.7625	10	1-3,5876-5874;5-9,5872-5868;12-21,5865-5856	4-4,5873-5873[SIL];10-11,5867-5866[SIL]	((((((((((..(((((.(((&))).)))))..))))))))))	GAAGGAGAGAUUAGAGAAGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999760239991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3693_c0_g1_5867_TPlot.pdf
TRINITY_DN3693_c0_g1:5868	si_s86	TRINITY_DN3693_c0_g1	5853	5878	5868	-32.90	-24.70	0.750759878419453	12.5	1-6,5878-5873;7-10,5871-5868;11-21,5863-5853	x-x,5872-5872[BULt];x-x,5867-5864[BULt]	(((((((((((....((((.((((((&))))))-))))----)))))))))))	AGCGAAGGAGAGAUUAGAGAAGGAGA&UUUCCU-UUCU----UCUUCUUCGCU	2	0.990244922553744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3693_c0_g1_5868_TPlot.pdf
TRINITY_DN3693_c0_g1:5870	si_s70	TRINITY_DN3693_c0_g1	5859	5878	5870	-25.80	-17.20	0.666666666666667	8.5	2-6,5877-5873;8-12,5872-5868;15-21,5865-5859	1-1,5878-5878[UP5];7-7,x-x[BULq];13-14,5867-5866[SIL]	(((((((..(((((-(((((.&.))))).)))))..)))))))	GGAGAGAUUAGAGA-AGGAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3693_c0_g1_5870_TPlot.pdf
TRINITY_DN3693_c0_g1:5873	si_s78	TRINITY_DN3693_c0_g1	5858	5882	5873	-26.20	-17.60	0.67175572519084	9	1-12,5882-5871;13-14,5869-5868;15-21,5864-5858	x-x,5870-5870[BULt];x-x,5867-5865[BULt]	(((((((...((.((((((((((((&))))))))))))-))---)))))))	AGGAGAGAUUAGAGAAGGAGAAAGA&UUUUUUUCUUUC-CU---UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3693_c0_g1_5873_TPlot.pdf
TRINITY_DN3693_c0_g1:5915	si_s520	TRINITY_DN3693_c0_g1	5904	5924	5915	-24.00	-16.90	0.704166666666667	6	1-13,5924-5912;16-19,5909-5906	14-15,5911-5910[SIL];20-21,5905-5904[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	GCAUGAAAUCGAAUUAAGGGU&AUUCUUAAUUCGAAAUCAUUU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN3693_c0_g1_5915_TPlot.pdf
TRINITY_DN3693_c0_g1:5916	si_s519	TRINITY_DN3693_c0_g1	5905	5925	5916	-24.40	-17.40	0.713114754098361	5.5	1-14,5925-5912;17-20,5909-5906	15-16,5911-5910[SIL];21-21,5905-5905[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	CAUGAAAUCGAAUUAAGGGUG&UAUUCUUAAUUCGAAAUCAUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN3693_c0_g1_5916_TPlot.pdf
TRINITY_DN3693_c0_g1:5917	si_s518	TRINITY_DN3693_c0_g1	5906	5926	5917	-24.60	-17.40	0.707317073170732	6	2-15,5925-5912;18-21,5909-5906	1-1,5926-5926[UP5];16-17,5911-5910[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	AUGAAAUCGAAUUAAGGGUGA&AUAUUCUUAAUUCGAAAUCAU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN3693_c0_g1_5917_TPlot.pdf
TRINITY_DN3693_c0_g1:5918	si_s517	TRINITY_DN3693_c0_g1	5907	5927	5918	-24.80	-16.30	0.657258064516129	8	3-16,5925-5912;19-21,5909-5907	1-2,5927-5926[UP5];17-18,5911-5910[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	UGAAAUCGAAUUAAGGGUGAA&UAUAUUCUUAAUUCGAAAUCA	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s517_TRINITY_DN3693_c0_g1_5918_TPlot.pdf
TRINITY_DN3693_c0_g1:5922	si_s513	TRINITY_DN3693_c0_g1	5911	5932	5922	-24.90	-16.30	0.654618473895582	11	3-5,5930-5928;7-20,5925-5912	1-2,5932-5931[UP5];6-6,5927-5926[AILt];21-21,5911-5911[UP3]	.((((((((((((((..(((..&..)))-.)))))))))))))).	AUCGAAUUAAGGGUGAAAGAGA&AUUCU-AUAUUCUUAAUUCGAA	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN3693_c0_g1_5922_TPlot.pdf
TRINITY_DN3693_c0_g1:5935	si_s70	TRINITY_DN3693_c0_g1	5924	5944	5935	-25.80	-16.98	0.658139534883721	8.5	2-6,5943-5939;10-20,5935-5925	1-1,5944-5944[UP5];7-9,5938-5936[SIL];21-21,5924-5924[UP3]	.(((((((((((...(((((.&.)))))...))))))))))).	UGAAAGAGAAAAUGGAGAAGG&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3693_c0_g1_5935_TPlot.pdf
TRINITY_DN3695_c0_g1:401	si_s484	TRINITY_DN3695_c0_g1	390	410	401	-20.50	-14.00	0.682926829268293	5	2-14,409-397;16-19,395-392	1-1,410-410[UP5];15-15,396-396[SIL];20-21,391-390[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	GAGUGUCUAAAUAAAUAUAGA&CCUAUAUUUAUUUAAAUAUAA	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN3695_c0_g1_401_TPlot.pdf
TRINITY_DN3695_c0_g1:404	si_s481	TRINITY_DN3695_c0_g1	393	414	404	-23.00	-17.50	0.760869565217391	3.5	1-4,414-411;5-17,409-397;19-21,395-393	x-x,410-410[BULt];18-18,396-396[SIL]	(((.(((((((((((((.((((&))))-))))))))))))).)))	UGUCUAAAUAAAUAUAGAGAUC&GAUC-CUAUAUUUAUUUAAAUA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN3695_c0_g1_404_TPlot.pdf
TRINITY_DN3695_c0_g1:405	si_s480	TRINITY_DN3695_c0_g1	394	415	405	-25.00	-17.40	0.696	6	2-5,414-411;6-18,409-397	1-1,415-415[UP5];x-x,410-410[BULt];19-21,396-394[UP3]	...(((((((((((((.((((.&.))))-)))))))))))))...	GUCUAAAUAAAUAUAGAGAUCA&GGAUC-CUAUAUUUAUUUAAAU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN3695_c0_g1_405_TPlot.pdf
TRINITY_DN3695_c0_g1:406	si_s479	TRINITY_DN3695_c0_g1	395	416	406	-26.40	-17.40	0.659090909090909	7	3-6,414-411;7-19,409-397	1-2,416-415[UP5];x-x,410-410[BULt];20-21,396-395[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	UCUAAAUAAAUAUAGAGAUCAA&CGGAUC-CUAUAUUUAUUUAAA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN3695_c0_g1_406_TPlot.pdf
TRINITY_DN36970_c0_g1:1095	si_a317	TRINITY_DN36970_c0_g1	1084	1104	1095	-24.30	-16.20	0.666666666666667	8.5	1-1,1104-1104;4-10,1101-1095;12-20,1093-1085	2-3,1103-1102[SIL];11-11,1094-1094[SIL];21-21,1084-1084[UP3]	.(((((((((.(((((((..(&)..))))))).))))))))).	AGAAAAAAUCUUGGGUAAGGC&GAUUUAUCCAUGAUUUUUUUA	4	0.999999995765342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN36970_c0_g1_1095_TPlot.pdf
TRINITY_DN3697_c0_g1:4062	si_a397	TRINITY_DN3697_c0_g1	4052	4071	4062	-24.00	-16.70	0.695833333333333	3.5	1-11,4071-4061;13-21,4060-4052	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	AAAUAAAAC-AUUUUAUAUUC&GAAUAUAGAAUUGUUUUGUUU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN3697_c0_g1_4062_TPlot.pdf
TRINITY_DN3697_c0_g1:4133	si_s301	TRINITY_DN3697_c0_g1	4116	4142	4133	-30.40	-22.60	0.743421052631579	7.5	1-15,4142-4128;16-21,4121-4116	x-x,4127-4122[BULt]	((((((......(((((((((((((((&)))))))))))))))------))))))	ACAGAGCUUUUUUUUUCGCAAUUCUAA&UUGGAAUUGCGAAAA------UUCUGU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s301_TRINITY_DN3697_c0_g1_4133_TPlot.pdf
TRINITY_DN36988_c0_g1:41	si_s489	TRINITY_DN36988_c0_g1	31	50	41	-17.90	-11.70	0.653631284916201	6.5	2-16,49-35;18-19,34-33	1-1,50-50[UP5];17-17,x-x[BULq];20-21,32-31[UP3]	..((-(((((((((((((((.&.))))))))))))))).))..	UAUG-UUGUGUUUAAAUAGAC&AUUUAUUUAAAUAUAAACAAA	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN36988_c0_g1_41_TPlot.pdf
TRINITY_DN369_c0_g1:1000	si_a836	TRINITY_DN369_c0_g1	989	1009	1000	-24.10	-16.00	0.663900414937759	17.5	9-19,1001-991	1-8,1009-1002[UP5];20-21,990-989[UP3]	..(((((((((((........&........)))))))))))..	AAAGCAGCUUCUACCAAACGU&AAAAAAAAUAGAAGUUGCUAA	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN369_c0_g1_1000_TPlot.pdf
TRINITY_DN369_c0_g1:1018	si_s250	TRINITY_DN369_c0_g1	1007	1027	1018	-33.30	-22.00	0.660660660660661	8	1-3,1027-1025;6-11,1022-1017;13-20,1015-1008	4-5,1024-1023[SIL];12-12,1016-1016[SIL];21-21,1007-1007[UP3]	.((((((((.((((((..(((&)))..)))))).)))))))).	CGUAAUGUAACGGGAACGGCU&GGCAUUUCCCGAUAUAUUACU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN369_c0_g1_1018_TPlot.pdf
TRINITY_DN369_c0_g1:1019	si_s249	TRINITY_DN369_c0_g1	1008	1028	1019	-33.30	-21.90	0.657657657657658	7.5	2-4,1027-1025;7-12,1022-1017;14-21,1015-1008	1-1,1028-1028[UP5];5-6,1024-1023[SIL];13-13,1016-1016[SIL]	((((((((.((((((..(((.&.)))..)))))).))))))))	GUAAUGUAACGGGAACGGCUA&AGGCAUUUCCCGAUAUAUUAC	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN369_c0_g1_1019_TPlot.pdf
TRINITY_DN369_c0_g1:1037	si_s694	TRINITY_DN369_c0_g1	1026	1047	1037	-23.90	-16.60	0.694560669456067	8	1-7,1047-1041;9-16,1038-1031;18-21,1029-1026	8-8,1040-1039[AILt];17-17,1030-1030[SIL]	((((.((((((((..(((((((&)))))))-.)))))))).))))	CUAAAGAGUCGACGAAGUUGAA&UUUAAUU-AGUCGAUUUAUUAG	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN369_c0_g1_1037_TPlot.pdf
TRINITY_DN369_c0_g1:1210	si_a836	TRINITY_DN369_c0_g1	1199	1219	1210	-24.10	-15.70	0.651452282157676	18.5	9-19,1211-1201	1-8,1219-1212[UP5];20-21,1200-1199[UP3]	..(((((((((((........&........)))))))))))..	AAAGCAGCUUCUGCGAAACGU&AAAAAAAAUAGAAGUUGCUAA	2	0.99870110772865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN369_c0_g1_1210_TPlot.pdf
TRINITY_DN369_c0_g1:1782	si_a476	TRINITY_DN369_c0_g1	1771	1791	1782	-22.90	-16.90	0.737991266375546	5	1-17,1791-1775	18-21,1774-1771[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGAUUAUAUAAUAAUAAUUAC&GUAAUUAUUGUUAUAUAGAAU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN369_c0_g1_1782_TPlot.pdf
TRINITY_DN369_c0_g1:1783	si_a475	TRINITY_DN369_c0_g1	1772	1792	1783	-23.50	-17.00	0.723404255319149	5	2-18,1791-1775	1-1,1792-1792[UP5];19-21,1774-1772[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAUUAUAUAAUAAUAAUUACG&UGUAAUUAUUGUUAUAUAGAA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN369_c0_g1_1783_TPlot.pdf
TRINITY_DN369_c0_g1:1784	si_a474	TRINITY_DN369_c0_g1	1773	1793	1784	-23.60	-17.00	0.720338983050847	6	3-19,1791-1775	1-2,1793-1792[UP5];20-21,1774-1773[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUUAUAUAAUAAUAAUUACGA&AUGUAAUUAUUGUUAUAUAGA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN369_c0_g1_1784_TPlot.pdf
TRINITY_DN369_c0_g1:1785	si_a473	TRINITY_DN369_c0_g1	1774	1794	1785	-23.00	-17.00	0.739130434782609	6.5	4-20,1791-1775	1-3,1794-1792[UP5];21-21,1774-1774[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUAUAUAAUAAUAAUUACGAC&UAUGUAAUUAUUGUUAUAUAG	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN369_c0_g1_1785_TPlot.pdf
TRINITY_DN369_c0_g1:1786	si_a472	TRINITY_DN369_c0_g1	1775	1795	1786	-21.50	-16.70	0.776744186046512	7.5	5-21,1791-1775	1-4,1795-1792[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAUAUAAUAAUAAUUACGACG&AUAUGUAAUUAUUGUUAUAUA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN369_c0_g1_1786_TPlot.pdf
TRINITY_DN369_c0_g1:1787	si_a471	TRINITY_DN369_c0_g1	1776	1796	1787	-21.10	-15.20	0.720379146919431	9.5	6-21,1791-1776	1-5,1796-1792[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUAUAAUAAUAAUUACGACGA&AAUAUGUAAUUAUUGUUAUAU	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN369_c0_g1_1787_TPlot.pdf
TRINITY_DN369_c0_g1:1788	si_a470	TRINITY_DN369_c0_g1	1777	1797	1788	-21.30	-14.20	0.666666666666667	11.5	7-21,1791-1777	1-6,1797-1792[UP5]	(((((((((((((((......&......)))))))))))))))	UAUAAUAAUAAUUACGACGAA&UAAUAUGUAAUUAUUGUUAUA	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN369_c0_g1_1788_TPlot.pdf
TRINITY_DN369_c0_g1:1818	si_s814	TRINITY_DN369_c0_g1	1806	1827	1818	-26.60	-17.60	0.661654135338346	8	1-5,1827-1823;7-12,1821-1816;13-21,1814-1806	6-6,1822-1822[SIL];x-x,1815-1815[BULt]	(((((((((.((((((.(((((&))))).))))))-)))))))))	UCAUUGUUGCAGAGAAAGUGGC&GUUACCUUUUCU-UAAUAAUGA	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN369_c0_g1_1818_TPlot.pdf
TRINITY_DN369_c0_g1:617	si_s90	TRINITY_DN369_c0_g1	608	626	617	-35.30	-23.10	0.654390934844193	4	2-14,625-613;17-21,612-608	1-1,626-626[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	CCGAA--GAAGGAGAAGAAAA&CUUUCUUCUUCUUCGCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN369_c0_g1_617_TPlot.pdf
TRINITY_DN369_c0_g1:621	si_s77	TRINITY_DN369_c0_g1	610	630	621	-25.50	-16.80	0.658823529411765	9.5	5-12,626-619;14-21,617-610	1-4,630-627[UP5];13-13,618-618[SIL]	((((((((.((((((((....&....)))))))).))))))))	GAAGAAGGAGAAGAAAACUAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN369_c0_g1_621_TPlot.pdf
TRINITY_DN369_c0_g1:700	si_s607	TRINITY_DN369_c0_g1	689	716	700	-27.60	-18.10	0.655797101449275	19	1-9,716-708;10-19,700-691	x-x,707-701[BULt];20-21,690-689[UP3]	..((((((((((.......(((((((((&)))))))))-------))))))))))..	AAGGGUUUAAAAGAACGUGGAGGUUCGU&GCGAAUCUU-------UUUUAAAUCCAA	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN369_c0_g1_700_TPlot.pdf
TRINITY_DN369_c0_g1:701	si_a323	TRINITY_DN369_c0_g1	690	709	701	-26.80	-18.20	0.67910447761194	6.5	1-6,709-704;8-15,703-696;18-21,693-690	7-7,x-x[BULq];16-17,695-694[SIL]	((((..((((((((-((((((&)))))).))))))))..))))	AGGGUUUAAAAGAA-CGUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN369_c0_g1_701_TPlot.pdf
TRINITY_DN369_c0_g1:862	si_s837	TRINITY_DN369_c0_g1	851	871	862	-30.20	-20.40	0.675496688741722	7	3-15,869-857;17-18,855-854	1-2,871-870[UP5];16-16,856-856[SIL];19-21,853-851[UP3]	...((.(((((((((((((..&..))))))))))))).))...	AUCCGGUUCUUUCAAAUUGGC&AACAAUUUGAAAGAAGCGAGU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s837_TRINITY_DN369_c0_g1_862_TPlot.pdf
TRINITY_DN369_c0_g1:863	si_s836	TRINITY_DN369_c0_g1	852	872	863	-29.40	-20.40	0.693877551020408	8	4-16,869-857;18-19,855-854	1-3,872-870[UP5];17-17,856-856[SIL];20-21,853-852[UP3]	..((.(((((((((((((...&...))))))))))))).))..	UCCGGUUCUUUCAAAUUGGCU&AAACAAUUUGAAAGAAGCGAG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s836_TRINITY_DN369_c0_g1_863_TPlot.pdf
TRINITY_DN369_c0_g1:864	si_s835	TRINITY_DN369_c0_g1	853	873	864	-27.70	-20.40	0.736462093862816	9	5-17,869-857;19-20,855-854	1-4,873-870[UP5];18-18,856-856[SIL];21-21,853-853[UP3]	.((.(((((((((((((....&....))))))))))))).)).	CCGGUUCUUUCAAAUUGGCUU&AAAACAAUUUGAAAGAAGCGA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s835_TRINITY_DN369_c0_g1_864_TPlot.pdf
TRINITY_DN369_c0_g1:865	si_s834	TRINITY_DN369_c0_g1	854	874	865	-26.70	-19.60	0.734082397003745	10	6-18,869-857;20-21,855-854	1-5,874-870[UP5];19-19,856-856[SIL]	((.(((((((((((((.....&.....))))))))))))).))	CGGUUCUUUCAAAUUGGCUUC&AAAAACAAUUUGAAAGAAGCG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s834_TRINITY_DN369_c0_g1_865_TPlot.pdf
TRINITY_DN369_c0_g1:866	si_s833	TRINITY_DN369_c0_g1	855	874	866	-27.20	-18.20	0.669117647058823	7	1-3,874-872;7-19,869-857;21-21,855-855	4-6,871-870[AILq];20-20,856-856[SIL]	(.(((((((((((((..-(((&)))...))))))))))))).)	GGUUCUUUCAAAUUGGC-UUC&GAAAAACAAUUUGAAAGAAGC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s833_TRINITY_DN369_c0_g1_866_TPlot.pdf
TRINITY_DN369_c0_g1:868	si_s831	TRINITY_DN369_c0_g1	857	876	868	-24.00	-16.00	0.666666666666667	9	3-5,874-872;9-21,869-857	1-2,876-875[UP5];6-8,871-870[AILq]	(((((((((((((..-(((..&..)))...)))))))))))))	UUCUUUCAAAUUGGC-UUCUG&AUGAAAAACAAUUUGAAAGAA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s831_TRINITY_DN369_c0_g1_868_TPlot.pdf
TRINITY_DN369_c1_g1:2581	si_s493	TRINITY_DN369_c1_g1	2570	2590	2581	-19.80	-12.90	0.651515151515151	6	1-13,2590-2578;15-19,2576-2572	14-14,2577-2577[SIL];20-21,2571-2570[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AAGUUUUUUUUGUAUUUAGGU&AUUUAAAUAUAAACAAAACAA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN369_c1_g1_2581_TPlot.pdf
TRINITY_DN369_c1_g1:2582	si_s492	TRINITY_DN369_c1_g1	2571	2591	2582	-20.10	-13.70	0.681592039800995	5.5	1-14,2591-2578;16-20,2576-2572	15-15,2577-2577[SIL];21-21,2571-2571[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AGUUUUUUUUGUAUUUAGGUG&UAUUUAAAUAUAAACAAAACA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN369_c1_g1_2582_TPlot.pdf
TRINITY_DN369_c1_g1:2583	si_s491	TRINITY_DN369_c1_g1	2572	2592	2583	-19.50	-13.20	0.676923076923077	6	2-15,2591-2578;17-21,2576-2572	1-1,2592-2592[UP5];16-16,2577-2577[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	GUUUUUUUUGUAUUUAGGUGU&UUAUUUAAAUAUAAACAAAAC	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN369_c1_g1_2583_TPlot.pdf
TRINITY_DN369_c1_g1:2691	si_s81	TRINITY_DN369_c1_g1	2680	2701	2691	-28.90	-21.10	0.730103806228374	5.5	1-9,2701-2693;10-17,2691-2684;20-21,2681-2680	x-x,2692-2692[BULt];18-19,2683-2682[SIL]	((..((((((((.(((((((((&)))))))))-))))))))..))	AGUUGGAGAAAGAGAGAGAAAA&UUUUCUUUC-CUUUCUUCUUCU	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN369_c1_g1_2691_TPlot.pdf
TRINITY_DN369_c1_g1:2693	si_s80	TRINITY_DN369_c1_g1	2681	2702	2693	-28.20	-20.90	0.74113475177305	5.5	1-10,2702-2693;11-18,2691-2684;21-21,2681-2681	x-x,2692-2692[BULt];19-20,2683-2682[SIL]	(..((((((((.((((((((((&))))))))))-))))))))..)	GUUGGAGAAAGAGAGAGAAAAA&UUUUUCUUUC-CUUUCUUCUUC	3	0.99999999996105	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN369_c1_g1_2693_TPlot.pdf
TRINITY_DN369_c1_g1:2694	si_s79	TRINITY_DN369_c1_g1	2682	2703	2694	-26.20	-21.40	0.816793893129771	5.5	1-11,2703-2693;12-19,2691-2684	x-x,2692-2692[BULt];20-21,2683-2682[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	UUGGAGAAAGAGAGAGAAAAAA&UUUUUUCUUUC-CUUUCUUCUU	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN369_c1_g1_2694_TPlot.pdf
TRINITY_DN369_c1_g1:2695	si_s78	TRINITY_DN369_c1_g1	2683	2704	2695	-26.20	-22.30	0.851145038167939	4.5	1-12,2704-2693;13-20,2691-2684	x-x,2692-2692[BULt];21-21,2683-2683[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	UGGAGAAAGAGAGAGAAAAAAA&UUUUUUUCUUUC-CUUUCUUCU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN369_c1_g1_2695_TPlot.pdf
TRINITY_DN369_c1_g1:2696	si_s77	TRINITY_DN369_c1_g1	2684	2705	2696	-25.50	-22.60	0.886274509803922	2.5	1-13,2705-2693;14-21,2691-2684	x-x,2692-2692[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GGAGAAAGAGAGAGAAAAAAAA&UUUUUUUUCUUUC-CUUUCUUC	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN369_c1_g1_2696_TPlot.pdf
TRINITY_DN369_c1_g1:2697	si_s76	TRINITY_DN369_c1_g1	2685	2706	2697	-23.60	-21.80	0.923728813559322	2.5	1-14,2706-2693;15-21,2691-2685	x-x,2692-2692[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GAGAAAGAGAGAGAAAAAAAAU&AUUUUUUUUCUUUC-CUUUCUU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN369_c1_g1_2697_TPlot.pdf
TRINITY_DN369_c1_g1:2698	si_s75	TRINITY_DN369_c1_g1	2686	2707	2698	-24.00	-21.80	0.908333333333333	1.5	1-15,2707-2693;16-21,2691-2686	x-x,2692-2692[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	AGAAAGAGAGAGAAAAAAAAUA&UAUUUUUUUUCUUUC-CUUUCU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN369_c1_g1_2698_TPlot.pdf
TRINITY_DN369_c1_g1:2699	si_s74	TRINITY_DN369_c1_g1	2687	2708	2699	-25.00	-23.40	0.936	1.5	1-16,2708-2693;17-21,2691-2687	x-x,2692-2692[BULt]	(((((.((((((((((((((((&))))))))))))))))-)))))	GAAAGAGAGAGAAAAAAAAUAG&CUAUUUUUUUUCUUUC-CUUUC	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN369_c1_g1_2699_TPlot.pdf
TRINITY_DN369_c1_g1:2700	si_s73	TRINITY_DN369_c1_g1	2688	2709	2700	-24.00	-21.80	0.908333333333333	1.5	1-17,2709-2693;18-21,2691-2688	x-x,2692-2692[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	AAAGAGAGAGAAAAAAAAUAGA&UCUAUUUUUUUUCUUUC-CUUU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN369_c1_g1_2700_TPlot.pdf
TRINITY_DN369_c1_g1:2701	si_s72	TRINITY_DN369_c1_g1	2689	2710	2701	-24.10	-21.30	0.883817427385892	2	1-18,2710-2693;19-21,2691-2689	x-x,2692-2692[BULt]	(((.((((((((((((((((((&))))))))))))))))))-)))	AAGAGAGAGAAAAAAAAUAGAG&UUCUAUUUUUUUUCUUUC-CUU	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN369_c1_g1_2701_TPlot.pdf
TRINITY_DN369_c1_g1:2702	si_s71	TRINITY_DN369_c1_g1	2690	2711	2702	-25.70	-20.60	0.801556420233463	3.5	2-19,2710-2693;20-21,2691-2690	1-1,2711-2711[UP5];x-x,2692-2692[BULt]	((.((((((((((((((((((.&.))))))))))))))))))-))	AGAGAGAGAAAAAAAAUAGAGU&CUUCUAUUUUUUUUCUUUC-CU	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN369_c1_g1_2702_TPlot.pdf
TRINITY_DN369_c1_g1:2703	si_s70	TRINITY_DN369_c1_g1	2692	2712	2703	-25.80	-19.80	0.767441860465116	5.5	3-20,2710-2693	1-2,2712-2711[UP5];21-21,2692-2692[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGAGAGAAAAAAAAUAGAGUG&ACUUCUAUUUUUUUUCUUUCC	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN369_c1_g1_2703_TPlot.pdf
TRINITY_DN369_c1_g1:2704	si_s69	TRINITY_DN369_c1_g1	2693	2715	2704	-23.40	-20.30	0.867521367521368	5.5	1-4,2715-2712;5-21,2709-2693	x-x,2711-2710[BULt]	(((((((((((((((((..((((&))))--)))))))))))))))))	GAGAGAAAAAAAAUAGAGUGGUU&AACU--UCUAUUUUUUUUCUUUC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN369_c1_g1_2704_TPlot.pdf
TRINITY_DN369_c1_g1:2705	si_s68	TRINITY_DN369_c1_g1	2694	2716	2705	-23.10	-17.20	0.744588744588744	6.5	2-5,2715-2712;6-21,2709-2694	1-1,2716-2716[UP5];x-x,2711-2710[BULt]	((((((((((((((((..((((.&.))))--))))))))))))))))	AGAGAAAAAAAAUAGAGUGGUUU&CAACU--UCUAUUUUUUUUCUUU	2	0.997224788720479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN369_c1_g1_2705_TPlot.pdf
TRINITY_DN369_c1_g1:2706	si_s67	TRINITY_DN369_c1_g1	2695	2714	2706	-25.60	-16.70	0.65234375	5	1-2,2714-2713;4-6,2711-2709;8-21,2708-2695	3-3,2712-2712[SIL];7-7,x-x[BULq]	((((((((((((((-(((.((&)).))).))))))))))))))	GAGAAAAAAAAUAG-AGUGGU&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN369_c1_g1_2706_TPlot.pdf
TRINITY_DN369_c1_g1:2717	si_s522	TRINITY_DN369_c1_g1	2706	2728	2717	-23.80	-15.90	0.668067226890756	9.5	2-6,2727-2723;8-20,2719-2707	1-1,2728-2728[UP5];7-7,2722-2720[AILt];21-21,2706-2706[UP3]	.(((((((((((((...(((((.&.)))))--.))))))))))))).	UAGAGUGGUUUCGAUUUUUAAGG&UCUUAA--UUCGAAAUCAUUUUU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN369_c1_g1_2717_TPlot.pdf
TRINITY_DN369_c1_g1:2718	si_s521	TRINITY_DN369_c1_g1	2707	2729	2718	-23.90	-17.30	0.723849372384937	8.5	1-7,2729-2723;9-21,2719-2707	8-8,2722-2720[AILt]	(((((((((((((...(((((((&)))))))--.)))))))))))))	AGAGUGGUUUCGAUUUUUAAGGA&UUCUUAA--UUCGAAAUCAUUUU	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN369_c1_g1_2718_TPlot.pdf
TRINITY_DN369_c1_g1:2719	si_s520	TRINITY_DN369_c1_g1	2708	2730	2719	-24.00	-18.00	0.75	8.5	1-8,2730-2723;10-21,2719-2708	9-9,2722-2720[AILt]	((((((((((((...((((((((&))))))))--.))))))))))))	GAGUGGUUUCGAUUUUUAAGGAU&AUUCUUAA--UUCGAAAUCAUUU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN369_c1_g1_2719_TPlot.pdf
TRINITY_DN369_c1_g1:2720	si_s519	TRINITY_DN369_c1_g1	2709	2731	2720	-24.40	-18.00	0.737704918032787	8	1-9,2731-2723;11-21,2719-2709	10-10,2722-2720[AILt]	(((((((((((...(((((((((&)))))))))--.)))))))))))	AGUGGUUUCGAUUUUUAAGGAUA&UAUUCUUAA--UUCGAAAUCAUU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN369_c1_g1_2720_TPlot.pdf
TRINITY_DN369_c1_g1:2723	si_s518	TRINITY_DN369_c1_g1	2710	2732	2723	-24.60	-17.20	0.699186991869919	9	2-10,2731-2723;12-21,2719-2710	1-1,2732-2732[UP5];11-11,2722-2720[AILt]	((((((((((...(((((((((.&.)))))))))--.))))))))))	GUGGUUUCGAUUUUUAAGGAUAC&AUAUUCUUAA--UUCGAAAUCAU	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN369_c1_g1_2723_TPlot.pdf
TRINITY_DN37008_c0_g1:1558	si_a778	TRINITY_DN37008_c0_g1	1544	1567	1558	-28.30	-20.14	0.711660777385159	6	1-14,1567-1554;16-21,1549-1544	15-15,1553-1550[AILt]	((((((....((((((((((((((&))))))))))))))---.))))))	GAAAAAAUUAGGAAGAGUUGGAUU&GAUUCAACUCUUCU---AUUUUUC	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN37008_c0_g1_1558_TPlot.pdf
TRINITY_DN3701_c0_g1:481	si_a844	TRINITY_DN3701_c0_g1	472	490	481	-29.20	-20.80	0.712328767123288	5	1-11,490-480;14-21,479-472	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	AUUUCAAG--GGUAACUUCUA&UAGAAGUUGCUAACUUGAAAU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN3701_c0_g1_481_TPlot.pdf
TRINITY_DN3701_c0_g1:482	si_a843	TRINITY_DN3701_c0_g1	473	491	482	-29.30	-19.60	0.668941979522184	5	2-12,490-480;15-21,479-473	1-1,491-491[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	UUUCAAG--GGUAACUUCUAC&AUAGAAGUUGCUAACUUGAAA	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a843_TRINITY_DN3701_c0_g1_482_TPlot.pdf
TRINITY_DN3702_c0_g1:757	si_s22	TRINITY_DN3702_c0_g1	746	766	757	-26.70	-18.90	0.707865168539326	8	1-5,766-762;7-7,760-760;9-19,758-748	6-6,761-761[SIL];8-8,759-759[SIL];20-21,747-746[UP3]	..(((((((((((.(.(((((&))))).).)))))))))))..	UAUUAGUUGCAAUGACUGUGG&CUAUAUUGAUUGCAACUAAAU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN3702_c0_g1_757_TPlot.pdf
TRINITY_DN3702_c0_g1:758	si_s21	TRINITY_DN3702_c0_g1	747	767	758	-27.40	-19.10	0.697080291970803	8	2-6,766-762;8-8,760-760;10-20,758-748	1-1,767-767[UP5];7-7,761-761[SIL];9-9,759-759[SIL];21-21,747-747[UP3]	.(((((((((((.(.(((((.&.))))).).))))))))))).	AUUAGUUGCAAUGACUGUGGG&ACUAUAUUGAUUGCAACUAAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN3702_c0_g1_758_TPlot.pdf
TRINITY_DN37039_c0_g1:432	si_a332	TRINITY_DN37039_c0_g1	421	445	432	-30.60	-21.30	0.696078431372549	12.5	1-9,445-437;10-20,432-422	x-x,436-433[BULt];21-21,421-421[UP3]	.(((((((((((....(((((((((&)))))))))----))))))))))).	AUUCGGGAUAAGCUAUGGAUGGAAA&UUUUUAUUC----CUUGUCCCGAAA	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN37039_c0_g1_432_TPlot.pdf
TRINITY_DN3703_c0_g1:954	si_s1	TRINITY_DN3703_c0_g1	943	963	954	-18.70	-13.40	0.716577540106952	6	3-16,961-948;18-20,946-944	1-2,963-962[UP5];17-17,947-947[SIL];21-21,943-943[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	AAAUUAUAAGUAAUGUAAAUG&UUUUUAUAUUACUUAUUAUUA	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN3703_c0_g1_954_TPlot.pdf
TRINITY_DN37050_c0_g1:1375	si_s77	TRINITY_DN37050_c0_g1	1365	1384	1375	-25.50	-16.70	0.654901960784314	4	1-15,1384-1370;18-18,1368-1368;20-21,1366-1365	16-17,1369-1369[AILq];19-19,1367-1367[SIL]	((.(.-(((((((((((((((&)))))))))))))))..).))	GAUGU-AGGAAAGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN37050_c0_g1_1375_TPlot.pdf
TRINITY_DN37050_c0_g1:1376	si_s76	TRINITY_DN37050_c0_g1	1365	1385	1376	-23.60	-17.80	0.754237288135593	6	1-16,1385-1370	17-21,1369-1365[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUGUAGGAAAGAAAAGAAAU&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN37050_c0_g1_1376_TPlot.pdf
TRINITY_DN37050_c0_g1:1377	si_s75	TRINITY_DN37050_c0_g1	1366	1386	1377	-24.00	-18.30	0.7625	5.5	1-17,1386-1370	18-21,1369-1366[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUGUAGGAAAGAAAAGAAAUG&UAUUUUUUUUCUUUCCUUUCU	2	0.99998838640176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN37050_c0_g1_1377_TPlot.pdf
TRINITY_DN37050_c0_g1:1378	si_s74	TRINITY_DN37050_c0_g1	1367	1387	1378	-25.00	-19.00	0.76	6	2-18,1386-1370	1-1,1387-1387[UP5];19-21,1369-1367[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UGUAGGAAAGAAAAGAAAUGA&CUAUUUUUUUUCUUUCCUUUC	2	0.998717173747751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN37050_c0_g1_1378_TPlot.pdf
TRINITY_DN37050_c0_g1:1379	si_s73	TRINITY_DN37050_c0_g1	1368	1389	1379	-24.00	-19.60	0.816666666666667	5	1-3,1389-1387;4-19,1385-1370	x-x,1386-1386[BULt];20-21,1369-1368[UP3]	..((((((((((((((((.(((&)))-))))))))))))))))..	GUAGGAAAGAAAAGAAAUGAGA&UCU-AUUUUUUUUCUUUCCUUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN37050_c0_g1_1379_TPlot.pdf
TRINITY_DN37050_c0_g1:1380	si_s72	TRINITY_DN37050_c0_g1	1369	1390	1380	-24.10	-19.80	0.821576763485477	5	2-4,1389-1387;5-20,1385-1370	1-1,1390-1390[UP5];x-x,1386-1386[BULt];21-21,1369-1369[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	UAGGAAAGAAAAGAAAUGAGAU&UUCU-AUUUUUUUUCUUUCCUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN37050_c0_g1_1380_TPlot.pdf
TRINITY_DN37050_c0_g1:1383	si_s69	TRINITY_DN37050_c0_g1	1372	1393	1383	-23.40	-15.40	0.658119658119658	10	5-7,1389-1387;8-21,1385-1372	1-4,1393-1390[UP5];x-x,1386-1386[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	GAAAGAAAAGAAAUGAGAUGAA&AACUUCU-AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN37050_c0_g1_1383_TPlot.pdf
TRINITY_DN37050_c0_g1:1442	si_s94	TRINITY_DN37050_c0_g1	1428	1452	1442	-35.50	-23.10	0.650704225352113	8	1-9,1452-1444;10-11,1442-1441;12-16,1439-1435;17-21,1432-1428	x-x,1443-1443[BULt];x-x,1440-1440[BULt];x-x,1434-1433[BULt]	(((((..(((((.((.(((((((((&)))))))))-))-)))))--)))))	CAAUCUGCGAAGCCGCAAGGAGAGG&CUUCUUCUU-CG-CUUCG--GAUUG	3	0.99999999971679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN37050_c0_g1_1442_TPlot.pdf
TRINITY_DN37050_c0_g1:1447	si_s87	TRINITY_DN37050_c0_g1	1432	1456	1447	-32.90	-21.70	0.659574468085106	12	3-13,1454-1444;14-19,1439-1434	1-2,1456-1455[UP5];x-x,1443-1440[BULt];20-21,1433-1432[UP3]	..((((((....(((((((((((..&..)))))))))))----))))))..	CUGCGAAGCCGCAAGGAGAGGGGUC&UUCCUUUCUUCUU----CUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN37050_c0_g1_1447_TPlot.pdf
TRINITY_DN37050_c0_g1:1448	si_s86	TRINITY_DN37050_c0_g1	1433	1457	1448	-32.90	-21.70	0.659574468085106	13	4-14,1454-1444;15-20,1439-1434	1-3,1457-1455[UP5];x-x,1443-1440[BULt];21-21,1433-1433[UP3]	.((((((....(((((((((((...&...)))))))))))----)))))).	UGCGAAGCCGCAAGGAGAGGGGUCC&UUUCCUUUCUUCUU----CUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN37050_c0_g1_1448_TPlot.pdf
TRINITY_DN37050_c0_g1:1486	si_a435	TRINITY_DN37050_c0_g1	1472	1495	1486	-36.10	-24.00	0.664819944598338	8.5	1-3,1495-1493;6-17,1490-1479;18-20,1475-1473	4-5,1492-1491[SIL];x-x,1478-1476[BULt];21-21,1472-1472[UP3]	.(((...((((((((((((..(((&)))..))))))))))))---))).	CGUCCGAUCAUAUCCAACGAUUCC&GGAUCCGUUGGAUAUGA---GAUA	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a435_TRINITY_DN37050_c0_g1_1486_TPlot.pdf
TRINITY_DN37050_c0_g1:1487	si_a434	TRINITY_DN37050_c0_g1	1476	1496	1487	-36.40	-24.00	0.659340659340659	8	2-4,1495-1493;7-18,1490-1479	1-1,1496-1496[UP5];5-6,1492-1491[SIL];19-21,1478-1476[UP3]	...((((((((((((..(((.&.)))..))))))))))))...	CGAUCAUAUCCAACGAUUCCA&AGGAUCCGUUGGAUAUGAGAU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN37050_c0_g1_1487_TPlot.pdf
TRINITY_DN37050_c0_g1:1530	si_a640	TRINITY_DN37050_c0_g1	1520	1539	1530	-24.10	-17.00	0.705394190871369	6	1-10,1539-1530;12-16,1529-1525;18-21,1523-1520	11-11,x-x[BULq];17-17,1524-1524[SIL]	((((.(((((-((((((((((&)))))))))).))))).))))	GAUGGGUUAC-CAGAGAAAUC&GAUUUUUUUGAGUAAUAUAUC	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN37050_c0_g1_1530_TPlot.pdf
TRINITY_DN3706_c0_g1:1025	si_s76	TRINITY_DN3706_c0_g1	1012	1034	1025	-23.60	-16.80	0.711864406779661	6.5	2-10,1033-1025;11-17,1023-1017;18-21,1015-1012	1-1,1034-1034[UP5];x-x,1024-1024[BULt];x-x,1016-1016[BULt]	((((.(((((((.(((((((((.&.)))))))))-)))))))-))))	GAGAUAAGGAAAUGAGAAAAGAA&AUUUUUUUUC-UUUCCUU-UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3706_c0_g1_1025_TPlot.pdf
TRINITY_DN3706_c0_g1:1128	si_s76	TRINITY_DN3706_c0_g1	1115	1137	1128	-23.60	-16.20	0.686440677966102	10	4-14,1134-1124;15-21,1121-1115	1-3,1137-1135[UP5];x-x,1123-1122[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GAGAGAGAAGAAGGAAAAGACUG&AUUUUUUUUCUUUC--CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3706_c0_g1_1128_TPlot.pdf
TRINITY_DN3706_c0_g1:1356	si_a68	TRINITY_DN3706_c0_g1	1342	1365	1356	-25.40	-18.10	0.71259842519685	9.5	2-12,1364-1354;13-20,1350-1343	1-1,1365-1365[UP5];x-x,1353-1351[BULt];21-21,1342-1342[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	AGAGAGACGGAUAUUUGAAAGAAA&CUUCUUUCAAAU---UGUUUUUCA	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3706_c0_g1_1356_TPlot.pdf
TRINITY_DN3706_c0_g1:861	si_a141	TRINITY_DN3706_c0_g1	850	871	861	-23.80	-15.60	0.65546218487395	10.5	3-8,869-864;9-17,862-854	1-2,871-870[UP5];x-x,863-863[BULt];18-21,853-850[UP3]	....(((((((((.((((((..&..))))))-)))))))))....	AUGCACAGCAACGUAUUGAUGA&UAAUUAAU-CGUUGUUGUUUUA	3	0.999999999999927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3706_c0_g1_861_TPlot.pdf
TRINITY_DN3707_c0_g1:470	si_a478	TRINITY_DN3707_c0_g1	459	479	470	-21.30	-15.30	0.71830985915493	13.5	3-18,477-462	1-2,479-478[UP5];19-21,461-459[UP3]	...((((((((((((((((..&..))))))))))))))))...	GCCUUCUGUGUGGCGGUGGCA&AAUUAUUGUUAUAUAGAAUAU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN3707_c0_g1_470_TPlot.pdf
TRINITY_DN3707_c0_g1:471	si_a477	TRINITY_DN3707_c0_g1	460	480	471	-21.50	-15.30	0.711627906976744	14	4-19,477-462	1-3,480-478[UP5];20-21,461-460[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCUUCUGUGUGGCGGUGGCAA&UAAUUAUUGUUAUAUAGAAUA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN3707_c0_g1_471_TPlot.pdf
TRINITY_DN3707_c0_g1:472	si_a476	TRINITY_DN3707_c0_g1	461	481	472	-22.90	-15.30	0.668122270742358	15	5-20,477-462	1-4,481-478[UP5];21-21,461-461[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUUCUGUGUGGCGGUGGCAAU&GUAAUUAUUGUUAUAUAGAAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN3707_c0_g1_472_TPlot.pdf
TRINITY_DN3707_c0_g1:554	si_s473	TRINITY_DN3707_c0_g1	543	562	554	-31.80	-20.80	0.654088050314465	9	1-9,562-554;11-15,553-549	10-10,x-x[BULq];16-21,548-543[UP3]	......(((((-(((((((((&))))))))).)))))......	ACAGGUUAGGA-CCGUUGGGU&AUCCAACGGAUCCUAUAUUUA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN3707_c0_g1_554_TPlot.pdf
TRINITY_DN3707_c0_g1:555	si_s471	TRINITY_DN3707_c0_g1	545	564	555	-32.00	-20.80	0.65	10	3-11,562-554;13-17,553-549	1-2,564-563[UP5];12-12,x-x[BULq];18-21,548-545[UP3]	....(((((-(((((((((..&..))))))))).)))))....	AGGUUAGGA-CCGUUGGGUUU&AUAUCCAACGGAUCCUAUAUU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN3707_c0_g1_555_TPlot.pdf
TRINITY_DN3707_c0_g1:566	si_a849	TRINITY_DN3707_c0_g1	556	573	566	-30.70	-20.70	0.674267100977199	8	1-8,573-566;12-21,565-556	9-11,x-x[BULq]	((((((((((---((((((((&))))))))...))))))))))	GUUGGGUUUC---UUAGCGAC&GUUGCUAACUUGAAAUCCAAU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a849_TRINITY_DN3707_c0_g1_566_TPlot.pdf
TRINITY_DN3707_c0_g1:667	si_s805	TRINITY_DN3707_c0_g1	656	676	667	-28.60	-18.70	0.653846153846154	9	1-6,676-671;9-18,668-659	7-8,670-669[SIL];19-21,658-656[UP3]	...((((((((((..((((((&))))))..))))))))))...	UUUGGAGGUGACGUCGAUAAA&UUUAUCUUCGUUACCUUUUCU	4	0.999999999999884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN3707_c0_g1_667_TPlot.pdf
TRINITY_DN3707_c0_g1:669	si_s803	TRINITY_DN3707_c0_g1	658	678	669	-26.00	-20.40	0.784615384615385	6.5	1-8,678-671;11-20,668-659	9-10,670-669[SIL];21-21,658-658[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	UGGAGGUGACGUCGAUAAAAU&AUUUUAUCUUCGUUACCUUUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3707_c0_g1_669_TPlot.pdf
TRINITY_DN3707_c0_g1:670	si_s802	TRINITY_DN3707_c0_g1	659	679	670	-26.40	-20.40	0.772727272727273	6.5	2-9,678-671;12-21,668-659	1-1,679-679[UP5];10-11,670-669[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	GGAGGUGACGUCGAUAAAAUU&UAUUUUAUCUUCGUUACCUUU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3707_c0_g1_670_TPlot.pdf
TRINITY_DN3707_c0_g1:672	si_s800	TRINITY_DN3707_c0_g1	661	682	672	-29.70	-21.40	0.72053872053872	5.5	1-4,682-679;5-11,677-671;14-21,668-661	x-x,678-678[BULt];12-13,670-669[SIL]	((((((((..(((((((.((((&))))-)))))))..))))))))	AGGUGACGUCGAUAAAAUUACG&CGUA-UUUUAUCUUCGUUACCU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN3707_c0_g1_672_TPlot.pdf
TRINITY_DN3707_c0_g1:93	si_s491	TRINITY_DN3707_c0_g1	82	102	93	-19.50	-13.40	0.687179487179487	8	2-4,101-99;6-19,97-84	1-1,102-102[UP5];5-5,98-98[SIL];20-21,83-82[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AAUUUGUUUGUGUUUAUGUAU&UUAUUUAAAUAUAAACAAAAC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN3707_c0_g1_93_TPlot.pdf
TRINITY_DN3707_c0_g1:95	si_s489	TRINITY_DN3707_c0_g1	84	104	95	-17.90	-13.20	0.737430167597765	9.5	4-6,101-99;8-21,97-84	1-3,104-102[UP5];7-7,98-98[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UUUGUUUGUGUUUAUGUAUUU&AUUUAUUUAAAUAUAAACAAA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN3707_c0_g1_95_TPlot.pdf
TRINITY_DN3707_c0_g1:96	si_s488	TRINITY_DN3707_c0_g1	85	105	96	-18.30	-12.40	0.677595628415301	11	5-7,101-99;9-21,97-85	1-4,105-102[UP5];8-8,98-98[SIL]	(((((((((((((.(((....&....))).)))))))))))))	UUGUUUGUGUUUAUGUAUUUC&UAUUUAUUUAAAUAUAAACAA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN3707_c0_g1_96_TPlot.pdf
TRINITY_DN370_c0_g1:287	si_a777	TRINITY_DN370_c0_g1	276	297	287	-27.00	-18.30	0.677777777777778	7.5	2-6,296-292;7-9,290-288;11-20,286-277	1-1,297-297[UP5];x-x,291-291[BULt];10-10,287-287[SIL];21-21,276-276[UP3]	.((((((((((.(((.(((((.&.)))))-))).)))))))))).	UGAAAUAGAAGCGUUGGAGUCU&UGAUUC-AACUCUUCUAUUUUU	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN370_c0_g1_287_TPlot.pdf
TRINITY_DN370_c0_g1:488	si_a77	TRINITY_DN370_c0_g1	477	500	488	-22.20	-16.00	0.720720720720721	11.5	1-8,500-493;9-21,489-477	x-x,492-490[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	UUUUGAUGAUGGAUAUGAGCAGUU&AAUUGUUU---UUCAUUAUUAAGA	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN370_c0_g1_488_TPlot.pdf
TRINITY_DN370_c0_g1:496	si_s458	TRINITY_DN370_c0_g1	485	504	496	-29.30	-22.00	0.750853242320819	6	1-8,504-497;11-20,495-486	9-10,496-496[AILq];21-21,485-485[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	AUGGAUAUGAGC-AGUUGUUG&CAACAAUUAUCUCAUAUCCAA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN370_c0_g1_496_TPlot.pdf
TRINITY_DN370_c0_g1:497	si_s456	TRINITY_DN370_c0_g1	487	506	497	-29.30	-23.10	0.78839590443686	5	1-10,506-497;13-21,495-487	11-12,496-496[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	GGAUAUGAGC-AGUUGUUGUU&AACAACAAUUAUCUCAUAUCC	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s456_TRINITY_DN370_c0_g1_497_TPlot.pdf
TRINITY_DN370_c0_g1:498	si_s455	TRINITY_DN370_c0_g1	488	507	498	-27.30	-21.30	0.78021978021978	4	1-11,507-497;14-21,495-488	12-13,496-496[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	GAUAUGAGC-AGUUGUUGUUA&UAACAACAAUUAUCUCAUAUC	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s455_TRINITY_DN370_c0_g1_498_TPlot.pdf
TRINITY_DN3710_c0_g1:1344	si_a201	TRINITY_DN3710_c0_g1	1329	1353	1344	-28.60	-19.34	0.676223776223776	15.5	1-10,1353-1344;14-19,1336-1331	11-13,1343-1337[AILt];20-21,1330-1329[UP3]	..((((((.......((((((((((&))))))))))----...))))))..	CAGGUCGAGGAUACAAUUAGUGAAC&GUUCACUAAU----AAAUCGACUAA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN3710_c0_g1_1344_TPlot.pdf
TRINITY_DN3710_c0_g1:1345	si_a200	TRINITY_DN3710_c0_g1	1330	1354	1345	-29.20	-19.44	0.665753424657534	14.5	2-11,1353-1344;15-20,1336-1331	1-1,1354-1354[UP5];12-14,1343-1337[AILt];21-21,1330-1330[UP3]	.((((((.......((((((((((.&.))))))))))----...)))))).	AGGUCGAGGAUACAAUUAGUGAACG&UGUUCACUAAU----AAAUCGACUA	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN3710_c0_g1_1345_TPlot.pdf
TRINITY_DN3710_c0_g1:1347	si_a198	TRINITY_DN3710_c0_g1	1332	1356	1347	-32.20	-21.34	0.662732919254658	9	2-13,1355-1344;17-21,1336-1332	1-1,1356-1356[UP5];14-16,1343-1337[AILt]	(((((.......((((((((((((.&.))))))))))))----...)))))	GUCGAGGAUACAAUUAGUGAACGGA&CCUGUUCACUAAU----AAAUCGAC	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a198_TRINITY_DN3710_c0_g1_1347_TPlot.pdf
TRINITY_DN37128_c0_g1:137	si_a151	TRINITY_DN37128_c0_g1	126	147	137	-28.90	-19.72	0.682352941176471	10	1-8,147-140;12-21,135-126	9-11,139-136[AILt]	((((((((((....((((((((&))))))))-...))))))))))	GGAUUGGCCUCUCUAACAAUAA&UUGUUGUU-UUAAGGUCAAUCU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN37128_c0_g1_137_TPlot.pdf
TRINITY_DN3714_c0_g1:1724	si_s69	TRINITY_DN3714_c0_g1	1713	1734	1724	-23.40	-15.30	0.653846153846154	11	3-8,1732-1727;11-21,1723-1713	1-2,1734-1733[UP5];9-10,1726-1724[AILt]	(((((((((((...((((((..&..))))))-..)))))))))))	GAAGGGAAAAACUUUGGAAGAG&AACUUCUA-UUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3714_c0_g1_1724_TPlot.pdf
TRINITY_DN3714_c0_g1:174	si_a28	TRINITY_DN3714_c0_g1	163	183	174	-30.70	-21.40	0.697068403908795	6.5	1-6,183-178;8-12,176-172;15-21,169-163	7-7,177-177[SIL];13-14,171-170[SIL]	(((((((..(((((.((((((&)))))).)))))..)))))))	GCCGGUCCAAGAACAAGAAGU&AUUUUUAGUUCUAAGACCGGU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN3714_c0_g1_174_TPlot.pdf
TRINITY_DN3714_c0_g1:175	si_a27	TRINITY_DN3714_c0_g1	164	184	175	-30.30	-19.90	0.656765676567657	7	2-7,183-178;9-13,176-172;16-21,169-164	1-1,184-184[UP5];8-8,177-177[SIL];14-15,171-170[SIL]	((((((..(((((.((((((.&.)))))).)))))..))))))	CCGGUCCAAGAACAAGAAGUU&UAUUUUUAGUUCUAAGACCGG	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN3714_c0_g1_175_TPlot.pdf
TRINITY_DN3714_c0_g1:452	si_a255	TRINITY_DN3714_c0_g1	438	461	452	-38.10	-26.80	0.703412073490814	10.5	1-11,461-451;12-18,447-441	x-x,450-448[BULt];19-21,440-438[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	AGCUGUCCUCACAGGUACAAUCGG&CCGAUUGUAUC---GAGGGCAAAC	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a255_TRINITY_DN3714_c0_g1_452_TPlot.pdf
TRINITY_DN3714_c0_g1:453	si_a254	TRINITY_DN3714_c0_g1	439	462	453	-38.80	-27.20	0.701030927835052	10.5	2-12,461-451;13-19,447-441	1-1,462-462[UP5];x-x,450-448[BULt];20-21,440-439[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	GCUGUCCUCACAGGUACAAUCGGA&CCCGAUUGUAUC---GAGGGCAAA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN3714_c0_g1_453_TPlot.pdf
TRINITY_DN3714_c0_g1:454	si_a253	TRINITY_DN3714_c0_g1	440	463	454	-41.20	-27.20	0.660194174757281	8.5	3-13,461-451;14-20,447-441	1-2,463-462[UP5];x-x,450-448[BULt];21-21,440-440[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	CUGUCCUCACAGGUACAAUCGGAG&CCCCGAUUGUAUC---GAGGGCAA	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN3714_c0_g1_454_TPlot.pdf
TRINITY_DN37150_c0_g1:1434	si_a755	TRINITY_DN37150_c0_g1	1423	1444	1434	-34.90	-24.80	0.710601719197708	9	3-4,1442-1441;5-21,1439-1423	1-2,1444-1443[UP5];x-x,1440-1440[BULt]	(((((((((((((((((.((..&..))-)))))))))))))))))	UCGAGGGCCUGAAGGAGAGUGC&GAAC-CUCCUUUGGGUUUUUGA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN37150_c0_g1_1434_TPlot.pdf
TRINITY_DN37150_c0_g1:1458	si_s894	TRINITY_DN37150_c0_g1	1447	1467	1458	-29.10	-20.20	0.694158075601375	12	5-17,1463-1451	1-4,1467-1464[UP5];18-21,1450-1447[UP3]	....(((((((((((((....&....)))))))))))))....	AACCUGAAGAGAAAGCUGCCC&AAUAGGCUUUCUCUUCAAUUU	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN37150_c0_g1_1458_TPlot.pdf
TRINITY_DN37150_c0_g1:1459	si_s893	TRINITY_DN37150_c0_g1	1448	1468	1459	-29.10	-20.20	0.694158075601375	13	6-18,1463-1451	1-5,1468-1464[UP5];19-21,1450-1448[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCUGAAGAGAAAGCUGCCCU&AAAUAGGCUUUCUCUUCAAUU	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN37150_c0_g1_1459_TPlot.pdf
TRINITY_DN37150_c0_g1:384	si_a627	TRINITY_DN37150_c0_g1	371	392	384	-29.50	-19.30	0.654237288135593	11	1-4,392-389;6-12,388-382;13-20,379-372	5-5,x-x[BULq];x-x,381-380[BULt];21-21,371-371[UP3]	.((((((((..(((((((-((((&)))).)))))))--)))))))).	CAGAAGUCGGUACGUGGU-CGCC&GGCGUAUUAUGU--CGAUUUUUU	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN37150_c0_g1_384_TPlot.pdf
TRINITY_DN3715_c0_g1:1574	si_s432	TRINITY_DN3715_c0_g1	1563	1583	1574	-21.30	-19.00	0.892018779342723	5	1-18,1583-1566	19-21,1565-1563[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAGAAUGUGUAGUUAUUGUUG&UAACAAUAAUUACAUAUUAUA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN3715_c0_g1_1574_TPlot.pdf
TRINITY_DN3715_c0_g1:1580	si_s426	TRINITY_DN3715_c0_g1	1569	1589	1580	-23.60	-16.70	0.707627118644068	11	6-21,1584-1569	1-5,1589-1585[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUGUAGUUAUUGUUGUUGAUU&UCUAUAUAACAAUAAUUACAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN3715_c0_g1_1580_TPlot.pdf
TRINITY_DN3715_c0_g1:411	si_s607	TRINITY_DN3715_c0_g1	400	420	411	-27.60	-18.60	0.673913043478261	7	1-5,420-416;8-10,413-411;12-21,409-400	6-7,415-414[SIL];11-11,410-410[SIL]	((((((((((.(((..(((((&)))))..))).))))))))))	UUGGAUUUAACGAAAUUUCGC&GCGAAUCUUUUUUAAAUCCAA	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN3715_c0_g1_411_TPlot.pdf
TRINITY_DN37165_c0_g1:43	si_a786	TRINITY_DN37165_c0_g1	32	56	43	-26.60	-19.00	0.714285714285714	11.5	1-9,56-48;10-20,43-33	x-x,47-44[BULt];21-21,32-32[UP3]	.(((((((((((....(((((((((&)))))))))----))))))))))).	AGGAGAUGGAGAAGAAAAUAGAAGA&UCUUCUAUU----UUUCUAUUUUCC	3	0.999985095982078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN37165_c0_g1_43_TPlot.pdf
TRINITY_DN37165_c0_g1:44	si_s73	TRINITY_DN37165_c0_g1	30	53	44	-24.00	-16.70	0.695833333333333	7	1-10,53-44;11-14,42-39;15-21,36-30	x-x,43-43[BULt];x-x,38-37[BULt]	(((((((..((((.((((((((((&))))))))))-))))--)))))))	AAAGGAGAUGGAGAAGAAAAUAGA&UCUAUUUUUU-UUCU--UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN37165_c0_g1_44_TPlot.pdf
TRINITY_DN37165_c0_g1:45	si_s72	TRINITY_DN37165_c0_g1	31	54	45	-24.10	-16.90	0.701244813278008	7	1-11,54-44;12-15,42-39;16-21,36-31	x-x,43-43[BULt];x-x,38-37[BULt]	((((((..((((.(((((((((((&)))))))))))-))))--))))))	AAGGAGAUGGAGAAGAAAAUAGAA&UUCUAUUUUUU-UUCU--UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN37165_c0_g1_45_TPlot.pdf
TRINITY_DN37165_c0_g1:47	si_s70	TRINITY_DN37165_c0_g1	33	56	47	-25.80	-17.60	0.682170542635659	6.5	2-13,55-44;14-17,42-39;18-21,36-33	1-1,56-56[UP5];x-x,43-43[BULt];x-x,38-37[BULt]	((((..((((.((((((((((((.&.))))))))))))-))))--))))	GGAGAUGGAGAAGAAAAUAGAAGA&ACUUCUAUUUUUU-UUCU--UUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN37165_c0_g1_47_TPlot.pdf
TRINITY_DN37165_c0_g1:49	si_a784	TRINITY_DN37165_c0_g1	34	58	49	-24.70	-16.90	0.684210526315789	13	3-11,56-48;12-21,43-34	1-2,58-57[UP5];x-x,47-44[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	GAGAUGGAGAAGAAAAUAGAAGAAA&ACUCUUCUAUU----UUUCUAUUUU	2	0.999999963949566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN37165_c0_g1_49_TPlot.pdf
TRINITY_DN3716_c0_g1:1192	si_a5	TRINITY_DN3716_c0_g1	1181	1201	1192	-31.10	-20.78	0.668167202572347	7.5	1-10,1201-1192;14-19,1188-1183	11-13,1191-1189[SIL];20-21,1182-1181[UP3]	..((((((...((((((((((&))))))))))...))))))..	UGGGGCUUAUGCUUCAAUUUC&GAAAUUGAAGAGAAAGCCUAU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN3716_c0_g1_1192_TPlot.pdf
TRINITY_DN3716_c0_g1:1193	si_a4	TRINITY_DN3716_c0_g1	1182	1202	1193	-31.60	-20.78	0.657594936708861	6.5	2-11,1201-1192;15-20,1188-1183	1-1,1202-1202[UP5];12-14,1191-1189[SIL];21-21,1182-1182[UP3]	.((((((...((((((((((.&.))))))))))...)))))).	GGGGCUUAUGCUUCAAUUUCC&UGAAAUUGAAGAGAAAGCCUA	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN3716_c0_g1_1193_TPlot.pdf
TRINITY_DN3716_c0_g1:1194	si_a3	TRINITY_DN3716_c0_g1	1183	1203	1194	-31.30	-20.38	0.65111821086262	6.5	3-12,1201-1192;16-21,1188-1183	1-2,1203-1202[UP5];13-15,1191-1189[SIL]	((((((...((((((((((..&..))))))))))...))))))	GGGCUUAUGCUUCAAUUUCCU&UUGAAAUUGAAGAGAAAGCCU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN3716_c0_g1_1194_TPlot.pdf
TRINITY_DN3716_c0_g1:1737	si_a59	TRINITY_DN3716_c0_g1	1725	1746	1737	-34.00	-22.40	0.658823529411765	9.5	1-3,1746-1744;5-15,1742-1732;17-18,1729-1728	4-4,1743-1743[SIL];16-16,1731-1730[AILt];19-21,1727-1725[UP3]	...((..(((((((((((.(((&))).)))))))))))-.))...	UGAUGCUGAGGAGUGAGUGGAC&GUCGACUCGCUUCUU-UCAAAU	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN3716_c0_g1_1737_TPlot.pdf
TRINITY_DN3716_c0_g1:963	si_a7	TRINITY_DN3716_c0_g1	952	972	963	-29.10	-19.30	0.663230240549828	10	3-12,970-961;14-17,959-956	1-2,972-971[UP5];13-13,960-960[SIL];18-21,955-952[UP3]	....((((.((((((((((..&..)))))))))).))))....	UCGGAGGCCUUCUCUUCGGCU&AAUUGAAGAGAAAGCCUAUUU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN3716_c0_g1_963_TPlot.pdf
TRINITY_DN3717_c0_g1:355	si_a504	TRINITY_DN3717_c0_g1	342	364	355	-32.90	-21.50	0.653495440729483	8.5	1-5,364-360;7-12,358-353;14-17,350-347;19-21,344-342	6-6,359-359[SIL];13-13,352-351[AILt];18-18,346-345[AILt]	(((..((((..((((((.(((((&))))).))))))-.))))-.)))	GCAGCUCCAUUGGAAGAGGAAGA&UUUUCGUCUUCC-UUGGA-AUGU	3	0.999999963512878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN3717_c0_g1_355_TPlot.pdf
TRINITY_DN3717_c0_g1:361	si_s68	TRINITY_DN3717_c0_g1	350	369	361	-23.10	-15.10	0.653679653679654	9	1-8,369-362;10-18,361-353	9-9,x-x[BULq];19-21,352-350[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AUUGGAAGAGGA-AGAGGUUG&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3717_c0_g1_361_TPlot.pdf
TRINITY_DN3717_c0_g1:362	si_s66	TRINITY_DN3717_c0_g1	352	371	362	-26.30	-19.00	0.722433460076046	7	2-10,370-362;12-20,361-353	1-1,371-371[UP5];11-11,x-x[BULq];21-21,352-352[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	UGGAAGAGGA-AGAGGUUGCC&AGCAACUUCUAUUUUUUUUCU	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN3717_c0_g1_362_TPlot.pdf
TRINITY_DN3717_c0_g1:363	si_s65	TRINITY_DN3717_c0_g1	353	372	363	-26.00	-18.60	0.715384615384615	8	3-11,370-362;13-21,361-353	1-2,372-371[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GGAAGAGGA-AGAGGUUGCCG&UAGCAACUUCUAUUUUUUUUC	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN3717_c0_g1_363_TPlot.pdf
TRINITY_DN3717_c0_g1:364	si_s64	TRINITY_DN3717_c0_g1	354	373	364	-24.10	-16.50	0.684647302904564	9	4-12,370-362;14-21,361-354	1-3,373-371[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GAAGAGGA-AGAGGUUGCCGA&UUAGCAACUUCUAUUUUUUUU	3	0.999999833457762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3717_c0_g1_364_TPlot.pdf
TRINITY_DN3717_c0_g1:365	si_s81	TRINITY_DN3717_c0_g1	353	379	365	-28.90	-19.50	0.674740484429066	15	1-8,379-372;9-13,366-362;14-21,360-353	x-x,371-367[BULt];x-x,361-361[BULt]	((((((((.(((((.....((((((((&))))))))-----)))))-))))))))	GGAAGAGGAAGAGGUUGCCGAAGAAGA&UUUUCUUU-----CCUUU-CUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3717_c0_g1_365_TPlot.pdf
TRINITY_DN3717_c0_g1:366	si_s809	TRINITY_DN3717_c0_g1	355	376	366	-28.50	-19.50	0.684210526315789	10	1-6,376-371;9-18,367-358	7-8,370-368[AILt];19-21,357-355[UP3]	...((((((((((...((((((&))))))-..))))))))))...	AAGAGGAAGAGGUUGCCGAAGA&UCUUCG-UUACCUUUUCUUAAU	3	0.999997222946794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3717_c0_g1_366_TPlot.pdf
TRINITY_DN3717_c0_g1:367	si_s808	TRINITY_DN3717_c0_g1	356	377	367	-28.60	-19.50	0.681818181818182	10	2-7,376-371;10-19,367-358	1-1,377-377[UP5];8-9,370-368[AILt];20-21,357-356[UP3]	..((((((((((...((((((.&.))))))-..))))))))))..	AGAGGAAGAGGUUGCCGAAGAA&AUCUUCG-UUACCUUUUCUUAA	3	0.999999755336861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN3717_c0_g1_367_TPlot.pdf
TRINITY_DN3717_c0_g1:368	si_s807	TRINITY_DN3717_c0_g1	357	378	368	-28.90	-19.50	0.674740484429066	11	3-8,376-371;11-20,367-358	1-2,378-377[UP5];9-10,370-368[AILt];21-21,357-357[UP3]	.((((((((((...((((((..&..))))))-..)))))))))).	GAGGAAGAGGUUGCCGAAGAAG&UAUCUUCG-UUACCUUUUCUUA	3	0.999999983432403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN3717_c0_g1_368_TPlot.pdf
TRINITY_DN3717_c0_g1:448	si_s817	TRINITY_DN3717_c0_g1	439	457	448	-24.50	-16.50	0.673469387755102	8	1-10,457-448;13-20,447-440	11-12,x-x[BULq];21-21,439-439[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	AUUUCAUUA--AAGGAGGGGU&ACCUUUUCUUAAUAAUGAAAA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN3717_c0_g1_448_TPlot.pdf
TRINITY_DN3717_c0_g1:449	si_s816	TRINITY_DN3717_c0_g1	440	458	449	-24.90	-16.30	0.654618473895582	7	2-11,457-448;14-21,447-440	1-1,458-458[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	UUUCAUUA--AAGGAGGGGUU&UACCUUUUCUUAAUAAUGAAA	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN3717_c0_g1_449_TPlot.pdf
TRINITY_DN3717_c0_g1:465	si_a770	TRINITY_DN3717_c0_g1	451	474	465	-28.70	-18.90	0.658536585365854	14	1-6,474-469;9-12,466-463;13-21,459-451	7-8,468-467[SIL];x-x,462-460[BULt]	(((((((((...((((..((((((&))))))..))))---)))))))))	GAGGGGUUGUGAGGUCUUUCAGAA&UUUUGAUUGAUU---CAACUCUUC	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN3717_c0_g1_465_TPlot.pdf
TRINITY_DN3717_c0_g1:467	si_a768	TRINITY_DN3717_c0_g1	453	476	467	-28.40	-19.10	0.672535211267606	11	1-8,476-469;11-14,466-463;15-21,459-453	9-10,468-467[SIL];x-x,462-460[BULt]	(((((((...((((..((((((((&))))))))..))))---)))))))	GGGGUUGUGAGGUCUUUCAGAAGC&GUUUUUGAUUGAUU---CAACUCU	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN3717_c0_g1_467_TPlot.pdf
TRINITY_DN3717_c0_g1:514	si_s73	TRINITY_DN3717_c0_g1	502	523	514	-24.00	-15.90	0.6625	7.5	2-7,522-517;9-14,515-510;15-21,508-502	1-1,523-523[UP5];8-8,516-516[SIL];x-x,509-509[BULt]	(((((((.((((((.((((((.&.)))))).))))))-)))))))	AAAGGAGAAGAGAACAAGUGGU&UCUAUUUUUUUUCU-UUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3717_c0_g1_514_TPlot.pdf
TRINITY_DN3717_c0_g1:547	si_a403	TRINITY_DN3717_c0_g1	536	556	547	-22.00	-14.40	0.654545454545455	7.5	2-7,555-550;9-17,548-540	1-1,556-556[UP5];8-8,549-549[SIL];18-21,539-536[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	UAAAAUAAGCAAACCAAUUCA&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3717_c0_g1_547_TPlot.pdf
TRINITY_DN3717_c0_g2:330	si_a111	TRINITY_DN3717_c0_g2	319	339	330	-26.20	-18.20	0.694656488549618	16.5	9-20,331-320	1-8,339-332[UP5];21-21,319-319[UP3]	.((((((((((((........&........)))))))))))).	AGAAACAAGCUCGACAACAGA&AUAAAAUACGAGCUUGUUUUA	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN3717_c0_g2_330_TPlot.pdf
TRINITY_DN3719_c0_g1:2468	si_s215	TRINITY_DN3719_c0_g1	2450	2477	2468	-37.40	-24.60	0.657754010695187	11	1-11,2477-2467;13-16,2465-2462;17-21,2454-2450	12-12,2466-2466[SIL];x-x,2461-2455[BULt]	(((((.......((((.(((((((((((&))))))))))).))))-------)))))	UCACGAUUUGCCCGGUGUUGGACACAAC&GUUGUGUUCGAAACCG-------CGUGA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN3719_c0_g1_2468_TPlot.pdf
TRINITY_DN3719_c0_g1:2631	si_a841	TRINITY_DN3719_c0_g1	2620	2640	2631	-29.20	-19.00	0.650684931506849	9.5	2-7,2639-2634;9-9,2632-2632;12-20,2629-2621	1-1,2640-2640[UP5];8-8,2633-2633[SIL];10-11,2631-2630[SIL];21-21,2620-2620[UP3]	.(((((((((..(.((((((.&.)))))).)..))))))))).	CCAGGUUAGCCUCGUCUGUUA&AAAUAGAAGUUGCUAACUUGA	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN3719_c0_g1_2631_TPlot.pdf
TRINITY_DN3719_c0_g1:2826	si_s665	TRINITY_DN3719_c0_g1	2815	2835	2826	-33.60	-21.90	0.651785714285714	9	1-10,2835-2826;13-16,2823-2820	11-12,2825-2824[SIL];17-21,2819-2815[UP3]	.....((((..((((((((((&))))))))))..)))).....	CCAACAAUCCUUUCGAUCCCC&GGGGAUCGAAUUGAUUAUAGA	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN3719_c0_g1_2826_TPlot.pdf
TRINITY_DN3719_c0_g1:2827	si_s664	TRINITY_DN3719_c0_g1	2816	2836	2827	-35.00	-25.40	0.725714285714286	7	1-11,2836-2826;14-17,2823-2820	12-13,2825-2824[SIL];18-21,2819-2816[UP3]	....((((..(((((((((((&)))))))))))..))))....	CAACAAUCCUUUCGAUCCCCC&GGGGGAUCGAAUUGAUUAUAG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s664_TRINITY_DN3719_c0_g1_2827_TPlot.pdf
TRINITY_DN3719_c0_g1:2828	si_s663	TRINITY_DN3719_c0_g1	2817	2837	2828	-34.80	-25.80	0.741379310344828	6	2-12,2836-2826;15-18,2823-2820	1-1,2837-2837[UP5];13-14,2825-2824[SIL];19-21,2819-2817[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	AACAAUCCUUUCGAUCCCCCU&CGGGGGAUCGAAUUGAUUAUA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s663_TRINITY_DN3719_c0_g1_2828_TPlot.pdf
TRINITY_DN3719_c0_g1:2829	si_s662	TRINITY_DN3719_c0_g1	2818	2838	2829	-35.40	-25.80	0.728813559322034	7	3-13,2836-2826;16-19,2823-2820	1-2,2838-2837[UP5];14-15,2825-2824[SIL];20-21,2819-2818[UP3]	..((((..(((((((((((..&..)))))))))))..))))..	ACAAUCCUUUCGAUCCCCCUG&UCGGGGGAUCGAAUUGAUUAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN3719_c0_g1_2829_TPlot.pdf
TRINITY_DN3719_c0_g1:2830	si_s661	TRINITY_DN3719_c0_g1	2819	2839	2830	-35.40	-25.80	0.728813559322034	8	4-14,2836-2826;17-20,2823-2820	1-3,2839-2837[UP5];15-16,2825-2824[SIL];21-21,2819-2819[UP3]	.((((..(((((((((((...&...)))))))))))..)))).	CAAUCCUUUCGAUCCCCCUGU&AUCGGGGGAUCGAAUUGAUUA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN3719_c0_g1_2830_TPlot.pdf
TRINITY_DN3719_c0_g1:2831	si_s660	TRINITY_DN3719_c0_g1	2820	2840	2831	-35.00	-25.60	0.731428571428571	9	5-15,2836-2826;18-21,2823-2820	1-4,2840-2837[UP5];16-17,2825-2824[SIL]	((((..(((((((((((....&....)))))))))))..))))	AAUCCUUUCGAUCCCCCUGUC&AAUCGGGGGAUCGAAUUGAUU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN3719_c0_g1_2831_TPlot.pdf
TRINITY_DN3719_c0_g1:2832	si_s659	TRINITY_DN3719_c0_g1	2821	2841	2832	-36.70	-24.80	0.67574931880109	11	6-16,2836-2826;19-21,2823-2821	1-5,2841-2837[UP5];17-18,2825-2824[SIL]	(((..(((((((((((.....&.....)))))))))))..)))	AUCCUUUCGAUCCCCCUGUCA&CAAUCGGGGGAUCGAAUUGAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s659_TRINITY_DN3719_c0_g1_2832_TPlot.pdf
TRINITY_DN3719_c0_g1:2837	si_s654	TRINITY_DN3719_c0_g1	2826	2847	2837	-38.60	-25.56	0.662176165803109	15	1-4,2847-2844;11-21,2836-2826	5-10,2843-2837[AILt]	(((((((((((.......((((&))))-......)))))))))))	UUCGAUCCCCCUGUCAUGGUCG&CGAU-ACAAUCGGGGGAUCGAA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s654_TRINITY_DN3719_c0_g1_2837_TPlot.pdf
TRINITY_DN3719_c0_g1:874	si_s19	TRINITY_DN3719_c0_g1	862	883	874	-27.80	-18.60	0.669064748201439	5.5	1-6,883-878;8-13,876-871;15-20,868-863	7-7,877-877[SIL];14-14,870-869[AILt];21-21,862-862[UP3]	.((((((..((((((.((((((&)))))).))))))-.)))))).	CAGUUGCUUGUCAAUCUAGUAA&UUACUAUAUUGAU-UGCAACUA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN3719_c0_g1_874_TPlot.pdf
TRINITY_DN3719_c0_g1:875	si_s18	TRINITY_DN3719_c0_g1	863	884	875	-27.50	-18.40	0.669090909090909	5.5	2-7,883-878;9-14,876-871;16-21,868-863	1-1,884-884[UP5];8-8,877-877[SIL];15-15,870-869[AILt]	((((((..((((((.((((((.&.)))))).))))))-.))))))	AGUUGCUUGUCAAUCUAGUAAC&AUUACUAUAUUGAU-UGCAACU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN3719_c0_g1_875_TPlot.pdf
TRINITY_DN3720_c0_g1:256	si_a728	TRINITY_DN3720_c0_g1	245	265	256	-40.30	-26.40	0.655086848635236	8.5	3-15,263-251;17-19,249-247	1-2,265-264[UP5];16-16,250-250[SIL];20-21,246-245[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	CCGGGAAGAGGUGCUCGAGAC&UACUCGGGCAUCUUUACCCCU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN3720_c0_g1_256_TPlot.pdf
TRINITY_DN3720_c0_g1:257	si_a727	TRINITY_DN3720_c0_g1	246	266	257	-39.70	-26.40	0.664987405541562	9.5	4-16,263-251;18-20,249-247	1-3,266-264[UP5];17-17,250-250[SIL];21-21,246-246[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	CGGGAAGAGGUGCUCGAGACG&UUACUCGGGCAUCUUUACCCC	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN3720_c0_g1_257_TPlot.pdf
TRINITY_DN3720_c0_g1:258	si_a726	TRINITY_DN3720_c0_g1	247	267	258	-39.00	-26.40	0.676923076923077	10	5-17,263-251;19-21,249-247	1-4,267-264[UP5];18-18,250-250[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GGGAAGAGGUGCUCGAGACGG&GUUACUCGGGCAUCUUUACCC	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a726_TRINITY_DN3720_c0_g1_258_TPlot.pdf
TRINITY_DN37212_c0_g1:228	si_s34	TRINITY_DN37212_c0_g1	217	237	228	-23.30	-15.70	0.67381974248927	3.5	2-13,236-225;15-20,223-218	1-1,237-237[UP5];14-14,224-224[SIL];21-21,217-217[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	AAAUUGUCAAAGAUUUAGUUC&CAACUAAAUCUUUAAUAAUUG	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN37212_c0_g1_228_TPlot.pdf
TRINITY_DN3721_c0_g1:1815	si_a11	TRINITY_DN3721_c0_g1	1803	1824	1815	-28.80	-19.90	0.690972222222222	7	1-3,1824-1822;5-14,1820-1811;17-20,1807-1804	4-4,1821-1821[SIL];15-16,1810-1808[AILt];21-21,1803-1803[UP3]	.((((...((((((((((.(((&))).))))))))))-..)))).	CGAUAUUUUGGGCUUUCUGUUC&GAAGAGAAAGCCUA-UUUAUUU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a11_TRINITY_DN3721_c0_g1_1815_TPlot.pdf
TRINITY_DN3721_c0_g1:1819	si_a7	TRINITY_DN3721_c0_g1	1808	1828	1819	-29.10	-19.90	0.683848797250859	12.5	5-7,1824-1822;9-18,1820-1811	1-4,1828-1825[UP5];8-8,1821-1821[SIL];19-21,1810-1808[UP3]	...((((((((((.(((....&....))).))))))))))...	UUUUGGGCUUUCUGUUCGUGU&AAUUGAAGAGAAAGCCUAUUU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN3721_c0_g1_1819_TPlot.pdf
TRINITY_DN37221_c0_g1:1038	si_s71	TRINITY_DN37221_c0_g1	1026	1046	1038	-25.70	-18.50	0.719844357976654	5	1-5,1046-1042;7-18,1041-1030;19-21,1028-1026	6-6,x-x[BULq];x-x,1029-1029[BULt]	(((.((((((((((((-(((((&))))).))))))))))))-)))	AGGUAAAGAAGAAAAA-AGAGG&CUUCUAUUUUUUUUCUUU-CCU	3	0.999999999975549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN37221_c0_g1_1038_TPlot.pdf
TRINITY_DN37221_c0_g1:1039	si_s70	TRINITY_DN37221_c0_g1	1027	1047	1039	-25.80	-17.40	0.674418604651163	5.5	2-6,1046-1042;8-19,1041-1030;20-21,1028-1027	1-1,1047-1047[UP5];7-7,x-x[BULq];x-x,1029-1029[BULt]	((.((((((((((((-(((((.&.))))).))))))))))))-))	GGUAAAGAAGAAAAA-AGAGGG&ACUUCUAUUUUUUUUCUUU-CC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN37221_c0_g1_1039_TPlot.pdf
TRINITY_DN37221_c0_g1:620	si_s620	TRINITY_DN37221_c0_g1	606	629	620	-32.10	-21.80	0.679127725856698	13.5	4-10,626-620;11-19,616-608	1-3,629-627[UP5];x-x,619-617[BULt];20-21,607-606[UP3]	..(((((((((...(((((((...&...)))))))---)))))))))..	AAGAAGAGAUCAAGGCUUGGAAAC&AAAUCCAAGC---GAUCUUUUCGU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN37221_c0_g1_620_TPlot.pdf
TRINITY_DN37221_c0_g1:621	si_s619	TRINITY_DN37221_c0_g1	607	630	621	-31.70	-21.80	0.687697160883281	14.5	5-11,626-620;12-20,616-608	1-4,630-627[UP5];x-x,619-617[BULt];21-21,607-607[UP3]	.(((((((((...(((((((....&....)))))))---))))))))).	AGAAGAGAUCAAGGCUUGGAAACA&UAAAUCCAAGC---GAUCUUUUCG	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN37221_c0_g1_621_TPlot.pdf
TRINITY_DN37221_c0_g1:970	si_a318	TRINITY_DN37221_c0_g1	957	979	970	-22.50	-14.70	0.653333333333333	9	1-10,979-970;12-14,968-966;15-20,963-958	11-11,969-969[SIL];x-x,965-964[BULt];21-21,957-957[UP3]	.((((((..(((.((((((((((&)))))))))).)))--)))))).	CUGAAGAUGGGUGGUGGAUGAAU&AUUUAUCCAUGAUU--UUUUUAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN37221_c0_g1_970_TPlot.pdf
TRINITY_DN3722_c0_g1:4221	si_a412	TRINITY_DN3722_c0_g1	4210	4230	4221	-18.30	-13.70	0.748633879781421	7	2-16,4229-4215	1-1,4230-4230[UP5];17-21,4214-4210[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACUAAUUUAAAUAUGAACAU&UUGUUUAUAUUUAAAUAAAUA	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN3722_c0_g1_4221_TPlot.pdf
TRINITY_DN3722_c0_g1:4226	si_a407	TRINITY_DN3722_c0_g1	4215	4236	4226	-19.80	-14.80	0.747474747474748	9	3-5,4234-4232;7-21,4229-4215	1-2,4236-4235[UP5];6-6,4231-4230[AILt]	(((((((((((((((..(((..&..)))-.)))))))))))))))	AUUUAAAUAUGAACAUUGACUU&UUGUU-UUGUUUAUAUUUAAAU	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3722_c0_g1_4226_TPlot.pdf
TRINITY_DN3722_c0_g1:4621	si_a405	TRINITY_DN3722_c0_g1	4610	4630	4621	-19.80	-13.40	0.676767676767677	9.5	3-14,4628-4617;17-19,4614-4612	1-2,4630-4629[UP5];15-16,4616-4615[SIL];20-21,4611-4610[UP3]	..(((..((((((((((((..&..))))))))))))..)))..	GAGAAGUUAGACAAAACAGGC&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3722_c0_g1_4621_TPlot.pdf
TRINITY_DN37230_c1_g1:51	si_s578	TRINITY_DN37230_c1_g1	40	62	51	-27.00	-18.80	0.696296296296296	8	1-3,62-60;6-8,57-55;9-21,52-40	4-5,59-58[SIL];x-x,54-53[BULt]	(((((((((((((..(((..(((&)))..)))--)))))))))))))	AUCCAUGAUUUUUAGUUAGCCCU&AGGAAUAA--AAAAAUCAUGGAU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s578_TRINITY_DN37230_c1_g1_51_TPlot.pdf
TRINITY_DN37230_c1_g1:52	si_s577	TRINITY_DN37230_c1_g1	41	63	52	-26.80	-17.80	0.664179104477612	9	2-4,62-60;7-9,57-55;10-21,52-41	1-1,63-63[UP5];5-6,59-58[SIL];x-x,54-53[BULt]	((((((((((((..(((..(((.&.)))..)))--))))))))))))	UCCAUGAUUUUUAGUUAGCCCUA&AAGGAAUAA--AAAAAUCAUGGA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s577_TRINITY_DN37230_c1_g1_52_TPlot.pdf
TRINITY_DN3723_c0_g1:1494	si_a351	TRINITY_DN3723_c0_g1	1483	1503	1494	-20.50	-13.40	0.653658536585366	11	3-8,1501-1496;11-20,1493-1484	1-2,1503-1502[UP5];9-10,1495-1494[SIL];21-21,1483-1483[UP3]	.((((((((((..((((((..&..))))))..)))))))))).	UUCGAAAUGGACAUGAUGUAG&AAAUAUUAAUUCUAUUUUGAU	4	0.999999973411668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN3723_c0_g1_1494_TPlot.pdf
TRINITY_DN3723_c0_g1:1495	si_a350	TRINITY_DN3723_c0_g1	1484	1504	1495	-20.30	-13.30	0.655172413793103	12	4-9,1501-1496;12-21,1493-1484	1-3,1504-1502[UP5];10-11,1495-1494[SIL]	((((((((((..((((((...&...))))))..))))))))))	UCGAAAUGGACAUGAUGUAGU&AAAAUAUUAAUUCUAUUUUGA	0	0.287661021438709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN3723_c0_g1_1495_TPlot.pdf
TRINITY_DN37248_c0_g1:117	si_s529	TRINITY_DN37248_c0_g1	105	126	117	-30.30	-20.90	0.68976897689769	6	1-14,126-113;17-21,109-105	15-16,112-110[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	UUGGACAAGAAGAUGGUUUCGA&UCGAAAUCAUUUUU-GAUCCGA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN37248_c0_g1_117_TPlot.pdf
TRINITY_DN3724_c0_g1:452	si_s72	TRINITY_DN3724_c0_g1	440	461	452	-24.10	-17.20	0.713692946058091	6	2-5,460-457;7-16,455-446;17-21,444-440	1-1,461-461[UP5];6-6,456-456[SIL];x-x,445-445[BULt]	(((((.((((((((((.((((.&.)))).))))))))))-)))))	GAGGAGGAGAAAAAAAUUAGGG&UUCUAUUUUUUUUCUU-UCCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3724_c0_g1_452_TPlot.pdf
TRINITY_DN3724_c0_g1:636	si_s83	TRINITY_DN3724_c0_g1	625	646	636	-30.90	-20.20	0.653721682847896	5.5	1-6,646-641;8-20,638-626	7-7,640-639[AILt];21-21,625-625[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AAAGAAGGAGAAAGAUAAAGAA&UUCUUU-CCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3724_c0_g1_636_TPlot.pdf
TRINITY_DN3724_c0_g1:637	si_s77	TRINITY_DN3724_c0_g1	625	646	637	-25.50	-16.70	0.654901960784314	5.5	1-6,646-641;8-13,639-634;14-20,632-626	7-7,640-640[SIL];x-x,633-633[BULt];21-21,625-625[UP3]	.(((((((.((((((.((((((&)))))).))))))-))))))).	AAAGAAGGAGAAAGAUAAAGAA&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3724_c0_g1_637_TPlot.pdf
TRINITY_DN3724_c0_g1:638	si_s81	TRINITY_DN3724_c0_g1	627	648	638	-28.90	-21.00	0.726643598615917	5.5	1-8,648-641;10-21,638-627	9-9,640-639[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	AGAAGGAGAAAGAUAAAGAAGA&UUUUCUUU-CCUUUCUUCUUCU	3	0.999999999999794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3724_c0_g1_638_TPlot.pdf
TRINITY_DN3724_c0_g1:639	si_s80	TRINITY_DN3724_c0_g1	628	649	639	-28.20	-19.80	0.702127659574468	6.5	2-9,648-641;11-21,638-628	1-1,649-649[UP5];10-10,640-639[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GAAGGAGAAAGAUAAAGAAGAC&UUUUUCUUU-CCUUUCUUCUUC	2	0.999999999999597	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3724_c0_g1_639_TPlot.pdf
TRINITY_DN3724_c0_g1:915	si_a411	TRINITY_DN3724_c0_g1	904	924	915	-17.90	-12.70	0.709497206703911	4.5	1-11,924-914;13-20,912-905	12-12,913-913[SIL];21-21,904-904[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	CUUUAUUUGUAUAUAAAUAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.99991663427952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3724_c0_g1_915_TPlot.pdf
TRINITY_DN3724_c0_g1:916	si_a410	TRINITY_DN3724_c0_g1	905	925	916	-17.80	-13.50	0.758426966292135	2.5	1-12,925-914;14-21,912-905	13-13,913-913[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	UUUAUUUGUAUAUAAAUAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3724_c0_g1_916_TPlot.pdf
TRINITY_DN37266_c0_g1:344	si_s435	TRINITY_DN37266_c0_g1	333	353	344	-20.90	-17.90	0.856459330143541	6	1-17,353-337	18-21,336-333[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUACAUAAUAUGUGGUUAUUG&CAAUAAUUACAUAUUAUAUAU	0	0.00548815211159415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN37266_c0_g1_344_TPlot.pdf
TRINITY_DN3727_c0_g1:2118	si_a394	TRINITY_DN3727_c0_g1	2107	2128	2118	-24.30	-16.30	0.670781893004115	6.5	1-8,2128-2121;9-21,2119-2107	x-x,2120-2120[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	CAAAGCAGUUUUGCUAUUUUUG&UAAGAAUA-UAGAAUUGUUUUG	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN3727_c0_g1_2118_TPlot.pdf
TRINITY_DN3727_c0_g1:2191	si_a888	TRINITY_DN3727_c0_g1	2180	2202	2191	-22.80	-15.40	0.675438596491228	5.5	1-9,2202-2194;10-16,2191-2185;18-21,2183-2180	x-x,2193-2192[BULt];17-17,2184-2184[SIL]	((((.(((((((..(((((((((&)))))))))--))))))).))))	CUUACUGUUACUUCAUAUUGAUU&AAUCAAUAU--AGUAAUAAUAAG	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN3727_c0_g1_2191_TPlot.pdf
TRINITY_DN37283_c0_g1:420	si_s84	TRINITY_DN37283_c0_g1	409	429	420	-32.30	-22.90	0.708978328173375	7.5	1-8,429-422;10-14,420-416;16-21,414-409	9-9,421-421[SIL];15-15,415-415[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	UGGAGACGAGGAUGGGAGAGG&UCUUUCCUUUCUUCUUCUUCG	4	0.999999998747172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN37283_c0_g1_420_TPlot.pdf
TRINITY_DN3729_c0_g1:10477	si_a503	TRINITY_DN3729_c0_g1	10465	10486	10477	-32.10	-21.30	0.663551401869159	11.5	5-13,10482-10474;14-18,10472-10468	1-4,10486-10483[UP5];x-x,10473-10473[BULt];19-21,10467-10465[UP3]	...(((((.(((((((((....&....)))))))))-)))))...	UCAUCCGAUGGAAGACGAUUUC&UUUUUCGUCUUCC-UUGGAAUG	4	0.999999972291003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN3729_c0_g1_10477_TPlot.pdf
TRINITY_DN3729_c0_g1:10478	si_a502	TRINITY_DN3729_c0_g1	10466	10487	10478	-32.10	-21.30	0.663551401869159	12.5	6-14,10482-10474;15-19,10472-10468	1-5,10487-10483[UP5];x-x,10473-10473[BULt];20-21,10467-10466[UP3]	..(((((.(((((((((.....&.....)))))))))-)))))..	CAUCCGAUGGAAGACGAUUUCG&GUUUUUCGUCUUCC-UUGGAAU	4	0.999999999998503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3729_c0_g1_10478_TPlot.pdf
TRINITY_DN3729_c0_g1:10481	si_a71	TRINITY_DN3729_c0_g1	10470	10491	10481	-23.30	-19.20	0.824034334763948	7.5	1-5,10491-10487;6-20,10485-10471	x-x,10486-10486[BULt];21-21,10470-10470[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	CGAUGGAAGACGAUUUCGGGAG&CUUUC-AAAUUGUUUUUCAUUA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3729_c0_g1_10481_TPlot.pdf
TRINITY_DN3729_c0_g1:10483	si_a69	TRINITY_DN3729_c0_g1	10472	10493	10483	-24.00	-18.50	0.770833333333333	7.5	1-7,10493-10487;8-21,10485-10472	x-x,10486-10486[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	AUGGAAGACGAUUUCGGGAGGG&UUCUUUC-AAAUUGUUUUUCAU	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3729_c0_g1_10483_TPlot.pdf
TRINITY_DN3729_c0_g1:10484	si_a68	TRINITY_DN3729_c0_g1	10473	10494	10484	-25.40	-17.40	0.68503937007874	8.5	2-8,10493-10487;9-21,10485-10473	1-1,10494-10494[UP5];x-x,10486-10486[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	UGGAAGACGAUUUCGGGAGGGC&CUUCUUUC-AAAUUGUUUUUCA	4	0.999999985387986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3729_c0_g1_10484_TPlot.pdf
TRINITY_DN3729_c0_g1:10485	si_a67	TRINITY_DN3729_c0_g1	10474	10494	10485	-27.20	-18.00	0.661764705882353	8.5	1-3,10494-10492;5-9,10491-10487;10-21,10485-10474	4-4,x-x[BULq];x-x,10486-10486[BULt]	((((((((((((.(((((-(((&))).)))))-))))))))))))	GGAAGACGAUUUCGGGAG-GGC&GCUUCUUUC-AAAUUGUUUUUC	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3729_c0_g1_10485_TPlot.pdf
TRINITY_DN3729_c0_g1:10642	si_s291	TRINITY_DN3729_c0_g1	10630	10652	10642	-38.10	-25.10	0.658792650918635	8	1-3,10652-10650;4-10,10648-10642;12-13,10640-10639;14-20,10637-10631	x-x,10649-10649[BULt];11-11,10641-10641[SIL];x-x,10638-10638[BULt];21-21,10630-10630[UP3]	.(((((((.((.(((((((.(((&)))-))))))).))-))))))).	UGCAAUUCGCAUUUGGCUACGGC&GCC-UAGUCGAUUG-GAAUUGCG	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN3729_c0_g1_10642_TPlot.pdf
TRINITY_DN3729_c0_g1:10643	si_s290	TRINITY_DN3729_c0_g1	10631	10653	10643	-38.10	-26.10	0.68503937007874	7	1-4,10653-10650;5-11,10648-10642;13-14,10640-10639;15-21,10637-10631	x-x,10649-10649[BULt];12-12,10641-10641[SIL];x-x,10638-10638[BULt]	(((((((.((.(((((((.((((&))))-))))))).))-)))))))	GCAAUUCGCAUUUGGCUACGGCG&CGCC-UAGUCGAUUG-GAAUUGC	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN3729_c0_g1_10643_TPlot.pdf
TRINITY_DN3729_c0_g1:10659	si_s168	TRINITY_DN3729_c0_g1	10648	10669	10659	-45.40	-33.12	0.729515418502203	10.5	1-9,10669-10661;13-19,10656-10650	10-12,10660-10657[AILt];20-21,10649-10648[UP3]	..(((((((....(((((((((&)))))))))-...)))))))..	ACGGCGUCUCCCUCCCCUGGCC&GGCCAGGGG-UAAAGAUGCCCG	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s168_TRINITY_DN3729_c0_g1_10659_TPlot.pdf
TRINITY_DN3729_c0_g1:10662	si_s166	TRINITY_DN3729_c0_g1	10650	10671	10662	-42.40	-33.32	0.785849056603774	9.5	3-11,10669-10661;15-21,10656-10650	1-2,10671-10670[UP5];12-14,10660-10657[AILt]	(((((((....(((((((((..&..)))))))))-...)))))))	GGCGUCUCCCUCCCCUGGCCUC&AUGGCCAGGGG-UAAAGAUGCC	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s166_TRINITY_DN3729_c0_g1_10662_TPlot.pdf
TRINITY_DN3729_c0_g1:10664	si_s164	TRINITY_DN3729_c0_g1	10652	10674	10664	-40.20	-28.02	0.697014925373134	8.5	1-3,10674-10672;5-13,10669-10661;17-21,10656-10652	4-4,10671-10670[AILt];14-16,10660-10657[AILt]	(((((....(((((((((..(((&)))-.)))))))))-...)))))	CGUCUCCCUCCCCUGGCCUCUGA&UCA-UGGCCAGGGG-UAAAGAUG	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN3729_c0_g1_10664_TPlot.pdf
TRINITY_DN3729_c0_g1:10665	si_s163	TRINITY_DN3729_c0_g1	10653	10675	10665	-38.60	-26.32	0.681865284974093	8.5	1-4,10675-10672;6-14,10669-10661;18-21,10656-10653	5-5,10671-10670[AILt];15-17,10660-10657[AILt]	((((....(((((((((..((((&))))-.)))))))))-...))))	GUCUCCCUCCCCUGGCCUCUGAA&UUCA-UGGCCAGGGG-UAAAGAU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s163_TRINITY_DN3729_c0_g1_10665_TPlot.pdf
TRINITY_DN3729_c0_g1:10666	si_s162	TRINITY_DN3729_c0_g1	10654	10676	10666	-40.10	-26.22	0.653865336658354	8.5	1-5,10676-10672;7-15,10669-10661;19-21,10656-10654	6-6,10671-10670[AILt];16-18,10660-10657[AILt]	(((....(((((((((..(((((&)))))-.)))))))))-...)))	UCUCCCUCCCCUGGCCUCUGAAU&GUUCA-UGGCCAGGGG-UAAAGA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN3729_c0_g1_10666_TPlot.pdf
TRINITY_DN3729_c0_g1:10668	si_s160	TRINITY_DN3729_c0_g1	10657	10678	10668	-40.60	-28.20	0.694581280788177	10	2-7,10677-10672;9-17,10669-10661	1-1,10678-10678[UP5];8-8,10671-10670[AILt];18-21,10660-10657[UP3]	....(((((((((..((((((.&.))))))-.)))))))))....	CCCUCCCCUGGCCUCUGAAUCG&AGGUUCA-UGGCCAGGGGUAAA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN3729_c0_g1_10668_TPlot.pdf
TRINITY_DN3729_c0_g1:10669	si_s159	TRINITY_DN3729_c0_g1	10658	10679	10669	-42.60	-28.20	0.661971830985915	11	3-8,10677-10672;10-18,10669-10661	1-2,10679-10678[UP5];9-9,10671-10670[AILt];19-21,10660-10658[UP3]	...(((((((((..((((((..&..))))))-.)))))))))...	CCUCCCCUGGCCUCUGAAUCGC&GAGGUUCA-UGGCCAGGGGUAA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN3729_c0_g1_10669_TPlot.pdf
TRINITY_DN3729_c0_g1:10672	si_s157	TRINITY_DN3729_c0_g1	10660	10681	10672	-45.20	-31.60	0.699115044247788	9	2-3,10680-10679;5-10,10677-10672;12-20,10669-10661	1-1,10681-10681[UP5];4-4,10678-10678[SIL];11-11,10671-10670[AILt];21-21,10660-10660[UP3]	.(((((((((..((((((.((.&.)).))))))-.))))))))).	UCCCCUGGCCUCUGAAUCGCCG&AGGAGGUUCA-UGGCCAGGGGU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN3729_c0_g1_10672_TPlot.pdf
TRINITY_DN3729_c0_g1:10673	si_s156	TRINITY_DN3729_c0_g1	10661	10682	10673	-44.40	-31.40	0.707207207207207	10	3-4,10680-10679;6-11,10677-10672;13-21,10669-10661	1-2,10682-10681[UP5];5-5,10678-10678[SIL];12-12,10671-10670[AILt]	(((((((((..((((((.((..&..)).))))))-.)))))))))	CCCCUGGCCUCUGAAUCGCCGU&AAGGAGGUUCA-UGGCCAGGGG	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s156_TRINITY_DN3729_c0_g1_10673_TPlot.pdf
TRINITY_DN3729_c0_g1:10674	si_s155	TRINITY_DN3729_c0_g1	10662	10683	10674	-42.00	-28.30	0.673809523809524	11	4-5,10680-10679;7-12,10677-10672;14-21,10669-10662	1-3,10683-10681[UP5];6-6,10678-10678[SIL];13-13,10671-10670[AILt]	((((((((..((((((.((...&...)).))))))-.))))))))	CCCUGGCCUCUGAAUCGCCGUG&AAAGGAGGUUCA-UGGCCAGGG	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN3729_c0_g1_10674_TPlot.pdf
TRINITY_DN3729_c0_g1:10774	si_s796	TRINITY_DN3729_c0_g1	10763	10782	10774	-30.30	-20.00	0.66006600660066	11	1-7,10782-10776;11-19,10773-10765	8-10,10775-10774[AILq];20-21,10764-10763[UP3]	..(((((((((..-(((((((&)))))))...)))))))))..	UCCGGAGGUGGCG-ACGAGCU&AGCUCGUAUUUUAUCUUCGUU	3	0.999999353490657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3729_c0_g1_10774_TPlot.pdf
TRINITY_DN3729_c0_g1:10775	si_s795	TRINITY_DN3729_c0_g1	10764	10783	10775	-30.30	-20.30	0.66996699669967	10.5	2-8,10782-10776;12-20,10773-10765	1-1,10783-10783[UP5];9-11,10775-10774[AILq];21-21,10764-10764[UP3]	.(((((((((..-(((((((.&.)))))))...))))))))).	CCGGAGGUGGCG-ACGAGCUG&AAGCUCGUAUUUUAUCUUCGU	4	0.999911308480448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN3729_c0_g1_10775_TPlot.pdf
TRINITY_DN3729_c0_g1:11852	si_s53	TRINITY_DN3729_c0_g1	11839	11861	11852	-31.20	-20.80	0.666666666666667	9.5	1-10,11861-11852;11-14,11849-11846;16-19,11844-11841	x-x,11851-11850[BULt];15-15,11845-11845[SIL];20-21,11840-11839[UP3]	..((((.((((..((((((((((&))))))))))--)))).))))..	CUGUUGGUGACAUUUGGAGUCCA&UGGAUUUCAA--GUUAGCAACUU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN3729_c0_g1_11852_TPlot.pdf
TRINITY_DN3729_c0_g1:419	si_a40	TRINITY_DN3729_c0_g1	408	427	419	-40.50	-26.70	0.659259259259259	7.5	2-8,426-420;11-15,418-414;17-21,412-408	1-1,427-427[UP5];9-10,419-419[AILq];16-16,413-413[SIL]	(((((.(((((.-(((((((.&.)))))))..))))).)))))	GCUCCCAGACUC-CCGGUCUC&AAGACCGGUAGGUCUAGGAGU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN3729_c0_g1_419_TPlot.pdf
TRINITY_DN3729_c0_g1:5033	si_a638	TRINITY_DN3729_c0_g1	5022	5042	5033	-24.40	-17.70	0.725409836065574	10.5	1-16,5042-5027	17-21,5026-5022[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUGGCUGCUCGAGAGGAUUGA&UCGAUUUUUUUGAGUAAUAUA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN3729_c0_g1_5033_TPlot.pdf
TRINITY_DN3729_c0_g1:5038	si_a633	TRINITY_DN3729_c0_g1	5027	5047	5038	-26.40	-20.70	0.784090909090909	11.5	5-21,5043-5027	1-4,5047-5044[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGCUCGAGAGGAUUGACUUGU&UUAUGUCGAUUUUUUUGAGUA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3729_c0_g1_5038_TPlot.pdf
TRINITY_DN3729_c0_g1:638	si_a628	TRINITY_DN3729_c0_g1	627	646	638	-27.10	-19.60	0.723247232472325	11	1-4,646-643;10-21,638-627	5-9,642-639[AILq]	((((((((((((....-((((&)))).....))))))))))))	GAAGAAAUCGACUCUG-ACGC&GCGUAUUAUGUCGAUUUUUUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN3729_c0_g1_638_TPlot.pdf
TRINITY_DN3729_c0_g1:6531	si_a619	TRINITY_DN3729_c0_g1	6517	6540	6531	-35.10	-23.90	0.680911680911681	8	2-10,6539-6531;11-18,6529-6522;19-21,6519-6517	1-1,6540-6540[UP5];x-x,6530-6530[BULt];x-x,6521-6520[BULt]	(((..((((((((.(((((((((.&.)))))))))-))))))))--)))	GACGAGUGAUACGACUUGGUCGAC&AUCGACUAGG-CGUAUUAU--GUC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a619_TRINITY_DN3729_c0_g1_6531_TPlot.pdf
TRINITY_DN3731_c0_g1:1540	si_s88	TRINITY_DN3731_c0_g1	1528	1554	1540	-34.80	-24.60	0.706896551724138	14	1-6,1554-1549;7-15,1543-1535;16-21,1533-1528	x-x,1548-1544[BULt];x-x,1534-1534[BULt]	((((((.(((((((((.....((((((&))))))-----)))))))))-))))))	GAGGCGCAAGAGGAAGCAGAUGAAGGG&UCCUUU-----CUUCUUCUU-CGCUUC	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3731_c0_g1_1540_TPlot.pdf
TRINITY_DN37330_c0_g1:58	si_s46	TRINITY_DN37330_c0_g1	47	70	58	-25.00	-16.80	0.672	12	1-7,70-64;8-12,60-56;14-20,54-48	x-x,63-61[BULt];13-13,55-55[SIL];21-21,47-47[UP3]	.(((((((.(((((...(((((((&)))))))---))))).))))))).	AGACUUGAUGUCCGUACGUUAUUG&UAAUAAU---UGGAUUUCAAGUUA	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN37330_c0_g1_58_TPlot.pdf
TRINITY_DN37330_c0_g1:59	si_s45	TRINITY_DN37330_c0_g1	48	71	59	-24.70	-16.30	0.659919028340081	12	2-8,70-64;9-13,60-56;15-21,54-48	1-1,71-71[UP5];x-x,63-61[BULt];14-14,55-55[SIL]	(((((((.(((((...(((((((.&.)))))))---))))).)))))))	GACUUGAUGUCCGUACGUUAUUGU&UUAAUAAU---UGGAUUUCAAGUU	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN37330_c0_g1_59_TPlot.pdf
TRINITY_DN37333_c0_g1:1413	si_s268	TRINITY_DN37333_c0_g1	1402	1425	1413	-26.10	-17.30	0.662835249042146	11	1-6,1425-1420;7-17,1416-1406	x-x,1419-1417[BULt];18-21,1405-1402[UP3]	....(((((((((((...((((((&))))))---)))))))))))....	CUGUUGUCGAUUUUUUUAUUGGGU&ACUCAA---AAAAAUCGACAUAAU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s268_TRINITY_DN37333_c0_g1_1413_TPlot.pdf
TRINITY_DN37333_c0_g1:1414	si_s267	TRINITY_DN37333_c0_g1	1403	1426	1414	-26.40	-18.10	0.685606060606061	10.5	1-7,1426-1420;8-18,1416-1406	x-x,1419-1417[BULt];19-21,1405-1403[UP3]	...(((((((((((...(((((((&)))))))---)))))))))))...	UGUUGUCGAUUUUUUUAUUGGGUG&UACUCAA---AAAAAUCGACAUAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s267_TRINITY_DN37333_c0_g1_1414_TPlot.pdf
TRINITY_DN3733_c0_g1:2653	si_a497	TRINITY_DN3733_c0_g1	2635	2662	2653	-32.00	-21.80	0.68125	21.5	2-2,2661-2661;4-10,2659-2653;11-21,2645-2635	1-1,2662-2662[UP5];3-3,2660-2660[SIL];x-x,2652-2646[BULt]	(((((((((((.......(((((((.(.&.).)))))))-------)))))))))))	GAGGAGGGCGAGUUGUCUGAAGCGAGGG&AUGUCGUUUU-------UCGUCUUCCUU	4	0.999999999996719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3733_c0_g1_2653_TPlot.pdf
TRINITY_DN3733_c0_g1:2692	si_s629	TRINITY_DN3733_c0_g1	2679	2701	2692	-34.60	-22.50	0.65028901734104	9	3-14,2699-2688;15-20,2685-2680	1-2,2701-2700[UP5];x-x,2687-2686[BULt];21-21,2679-2679[UP3]	.((((((..((((((((((((..&..))))))))))))--)))))).	GGAGCGCGACUACGAAGAGGUGC&CGAUCUUUUCGUAG--GCGUUUG	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3733_c0_g1_2692_TPlot.pdf
TRINITY_DN3733_c0_g1:2694	si_s627	TRINITY_DN3733_c0_g1	2681	2702	2694	-36.10	-23.60	0.653739612188366	7.5	2-3,2701-2700;5-16,2699-2688;17-21,2685-2681	1-1,2702-2702[UP5];4-4,x-x[BULq];x-x,2687-2686[BULt]	(((((..((((((((((((-((.&.)).))))))))))))--)))))	AGCGCGACUACGAAGAGGU-GCA&AGCGAUCUUUUCGUAG--GCGUU	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN3733_c0_g1_2694_TPlot.pdf
TRINITY_DN3733_c0_g1:652	si_s796	TRINITY_DN3733_c0_g1	641	664	652	-30.30	-19.80	0.653465346534653	15	1-4,664-661;5-7,657-655;9-20,653-642	x-x,660-658[BULt];8-8,654-654[SIL];21-21,641-641[UP3]	.((((((((((((.(((...((((&))))---))).)))))))))))).	CGCGAAGGUGGAGAGCGGUCGGCU&AGCU---CGUAUUUUAUCUUCGUU	4	0.999999963006205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3733_c0_g1_652_TPlot.pdf
TRINITY_DN3733_c0_g1:995	si_a784	TRINITY_DN3733_c0_g1	984	1004	995	-24.70	-16.50	0.668016194331984	9	3-11,1002-994;13-19,992-986	1-2,1004-1003[UP5];12-12,993-993[SIL];20-21,985-984[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	UUGAUAGAGUAGUAGAAGACG&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999978355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3733_c0_g1_995_TPlot.pdf
TRINITY_DN3734_c0_g1:1377	si_a80	TRINITY_DN3734_c0_g1	1366	1386	1377	-22.10	-15.20	0.687782805429864	7	1-14,1386-1373;16-19,1371-1368	15-15,1372-1372[SIL];20-21,1367-1366[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	CGUUUUGGAUAGUGAAGGACA&UGUUUUUCAUUAUUAAGAAAA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3734_c0_g1_1377_TPlot.pdf
TRINITY_DN3734_c0_g4:15	si_a487	TRINITY_DN3734_c0_g4	4	24	15	-24.80	-16.40	0.661290322580645	5.5	1-10,24-15;12-16,13-9;18-21,7-4	11-11,14-14[SIL];17-17,8-8[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	AAAGCCGACGCAUUCUAUGUA&UAUAUAGAAUAUGUCGUUUUU	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN3734_c0_g4_15_TPlot.pdf
TRINITY_DN3734_c0_g4:153	si_a760	TRINITY_DN3734_c0_g4	141	162	153	-31.10	-20.92	0.672668810289389	11	1-11,162-152;15-19,147-143	12-14,151-148[AILt];20-21,142-141[UP3]	..(((((....(((((((((((&)))))))))))-...)))))..	AACGGUCCCGCAGCCCAGAGGA&UCCUUUGGGUU-UUUGAUUGAU	3	0.999996599817936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN3734_c0_g4_153_TPlot.pdf
TRINITY_DN3734_c0_g4:16	si_a486	TRINITY_DN3734_c0_g4	4	25	16	-24.90	-16.50	0.662650602409639	6	2-11,24-15;13-17,13-9;18-21,7-4	1-1,25-25[UP5];12-12,14-14[SIL];x-x,8-8[BULt]	((((.(((((.((((((((((.&.)))))))))).)))))-))))	AAAGCCGACGCAUUCUAUGUAU&UUAUAUAGAAUAUGUCG-UUUU	2	0.992299301143276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN3734_c0_g4_16_TPlot.pdf
TRINITY_DN3735_c0_g1:1739	si_s700	TRINITY_DN3735_c0_g1	1728	1748	1739	-29.20	-19.20	0.657534246575342	6.5	1-7,1748-1742;9-19,1740-1730	8-8,1741-1741[SIL];20-21,1729-1728[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	CAUUCAUUGGUAACUCGACUG&UAGUCGAUUUAUUAGUGAACA	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN3735_c0_g1_1739_TPlot.pdf
TRINITY_DN3735_c0_g1:1740	si_s699	TRINITY_DN3735_c0_g1	1729	1749	1740	-28.60	-19.30	0.674825174825175	6.5	2-8,1748-1742;10-20,1740-1730	1-1,1749-1749[UP5];9-9,1741-1741[SIL];21-21,1729-1729[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	AUUCAUUGGUAACUCGACUGC&UUAGUCGAUUUAUUAGUGAAC	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN3735_c0_g1_1740_TPlot.pdf
TRINITY_DN3735_c0_g1:1741	si_s698	TRINITY_DN3735_c0_g1	1730	1750	1741	-27.00	-19.30	0.714814814814815	7.5	3-9,1748-1742;11-21,1740-1730	1-2,1750-1749[UP5];10-10,1741-1741[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	UUCAUUGGUAACUCGACUGCC&AUUAGUCGAUUUAUUAGUGAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN3735_c0_g1_1741_TPlot.pdf
TRINITY_DN3735_c0_g1:1742	si_s697	TRINITY_DN3735_c0_g1	1731	1751	1742	-26.90	-18.50	0.687732342007435	9.5	4-10,1748-1742;12-21,1740-1731	1-3,1751-1749[UP5];11-11,1741-1741[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UCAUUGGUAACUCGACUGCCA&AAUUAGUCGAUUUAUUAGUGA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN3735_c0_g1_1742_TPlot.pdf
TRINITY_DN3735_c0_g1:1844	si_a404	TRINITY_DN3735_c0_g1	1833	1855	1844	-21.70	-15.10	0.695852534562212	9	1-5,1855-1851;6-20,1848-1834	x-x,1850-1849[BULt];21-21,1833-1833[UP3]	.(((((((((((((((..(((((&)))))--))))))))))))))).	AAGGUAUGGACGAAAUGGAAUUC&GAAUU--GUUUUGUUUAUAUUUA	3	0.99999997516321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3735_c0_g1_1844_TPlot.pdf
TRINITY_DN3735_c0_g1:1845	si_a403	TRINITY_DN3735_c0_g1	1834	1856	1845	-22.00	-14.90	0.677272727272727	9	2-6,1855-1851;7-21,1848-1834	1-1,1856-1856[UP5];x-x,1850-1849[BULt]	(((((((((((((((..(((((.&.)))))--)))))))))))))))	AGGUAUGGACGAAAUGGAAUUCA&AGAAUU--GUUUUGUUUAUAUUU	3	0.999999999768692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3735_c0_g1_1845_TPlot.pdf
TRINITY_DN3735_c0_g1:1955	si_s68	TRINITY_DN3735_c0_g1	1943	1964	1955	-23.10	-15.20	0.658008658008658	7	1-8,1964-1957;10-15,1955-1950;17-21,1947-1943	9-9,1956-1956[SIL];16-16,1949-1948[AILt]	(((((..((((((.((((((((&)))))))).))))))-.)))))	GAAGACCAAGAAGCGGAAGUUG&CAACUUCUAUUUUUU-UUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3735_c0_g1_1955_TPlot.pdf
TRINITY_DN3735_c0_g1:464	si_s739	TRINITY_DN3735_c0_g1	453	472	464	-35.60	-25.30	0.710674157303371	10.5	2-6,471-467;10-19,464-455	1-1,472-472[UP5];7-9,466-465[AILq];20-21,454-453[UP3]	..((((((((((..-(((((.&.)))))...))))))))))..	CUGGUCGAUCUGGA-ACCCGG&ACGGGUGAAUAGAUUGACCUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN3735_c0_g1_464_TPlot.pdf
TRINITY_DN3736_c0_g3:1287	si_a391	TRINITY_DN3736_c0_g3	1274	1296	1287	-22.80	-16.00	0.701754385964912	6	2-13,1295-1284;14-19,1281-1276	1-1,1296-1296[UP5];x-x,1283-1282[BULt];20-21,1275-1274[UP3]	..((((((..((((((((((((.&.))))))))))))--))))))..	UCCAAUUCAUUAUGUUCUUAAUG&AAUUAAGAAUAUA--GAAUUGUU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN3736_c0_g3_1287_TPlot.pdf
TRINITY_DN37373_c0_g1:708	si_a775	TRINITY_DN37373_c0_g1	697	718	708	-27.20	-17.90	0.658088235294118	11.5	3-8,716-711;9-17,709-701	1-2,718-717[UP5];x-x,710-710[BULt];18-21,700-697[UP3]	....(((((((((.((((((..&..))))))-)))))))))....	GGAGAGGAGGGUUCGAGUCAGA&AUUGAUUC-AACUCUUCUAUUU	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN37373_c0_g1_708_TPlot.pdf
TRINITY_DN37381_c0_g1:13	si_s181	TRINITY_DN37381_c0_g1	2	22	13	-34.60	-24.80	0.716763005780347	8.5	3-11,20-12;13-21,10-2	1-2,22-21[UP5];12-12,11-11[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAUGGUUGUCGCUCGGGCGGA&GAUGCCCGAGUAACGAUUAUU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN37381_c0_g1_13_TPlot.pdf
TRINITY_DN373_c0_g1:1721	si_a603	TRINITY_DN373_c0_g1	1710	1732	1721	-29.80	-19.58	0.657046979865772	12	1-9,1732-1724;12-21,1719-1710	10-11,1723-1720[AILt]	((((((((((....(((((((((&)))))))))--..))))))))))	UUGGUUGGAAGAAGGUGGAGAUU&AAUUUUCGC--AAUUCCAAUCGA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN373_c0_g1_1721_TPlot.pdf
TRINITY_DN373_c0_g1:1835	si_a785	TRINITY_DN373_c0_g1	1825	1848	1835	-25.90	-17.40	0.671814671814672	10.5	1-9,1848-1840;10-15,1835-1830;17-21,1829-1825	x-x,1839-1836[BULt];16-16,x-x[BULq]	(((((-((((((....(((((((((&)))))))))----)))))).)))))	GAAGA-AGAAGAUCGUAUAGAAGAG&CUCUUCUAU----UUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN373_c0_g1_1835_TPlot.pdf
TRINITY_DN373_c0_g1:2454	si_s812	TRINITY_DN373_c0_g1	2442	2464	2454	-26.40	-17.70	0.670454545454545	8.5	1-6,2464-2459;7-12,2457-2452;13-18,2450-2445	x-x,2458-2458[BULt];x-x,2451-2451[BULt];19-21,2444-2442[UP3]	...((((((.((((((.((((((&))))))-))))))-))))))...	ACAGUUAAGAAAGAGGUUAACGA&UCGUUA-CCUUUU-CUUAAUAAU	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN373_c0_g1_2454_TPlot.pdf
TRINITY_DN373_c0_g1:2456	si_s810	TRINITY_DN373_c0_g1	2444	2466	2456	-27.90	-18.60	0.666666666666667	6.5	2-8,2465-2459;9-14,2457-2452;15-20,2450-2445	1-1,2466-2466[UP5];x-x,2458-2458[BULt];x-x,2451-2451[BULt];21-21,2444-2444[UP3]	.((((((.((((((.(((((((.&.)))))))-))))))-)))))).	AGUUAAGAAAGAGGUUAACGAAU&CUUCGUUA-CCUUUU-CUUAAUA	4	0.999999982404815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN373_c0_g1_2456_TPlot.pdf
TRINITY_DN373_c0_g1:2540	si_a21	TRINITY_DN373_c0_g1	2529	2549	2540	-24.30	-16.00	0.65843621399177	6.5	2-7,2548-2543;9-19,2541-2531	1-1,2549-2549[UP5];8-8,2542-2542[SIL];20-21,2530-2529[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	ACAGAGCUAGAAAAAAAUAGC&CCUAUUUAUUUUUAGUUCUAA	4	0.99999992536643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN373_c0_g1_2540_TPlot.pdf
TRINITY_DN373_c0_g1:2629	si_s79	TRINITY_DN373_c0_g1	2618	2636	2629	-26.20	-18.90	0.721374045801527	7	1-7,2636-2630;10-20,2629-2619	8-9,x-x[BULq];21-21,2618-2618[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	UGGAAGAAAGGA--GAAAGAG&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN373_c0_g1_2629_TPlot.pdf
TRINITY_DN373_c0_g1:2649	si_s802	TRINITY_DN373_c0_g1	2638	2658	2649	-26.40	-18.00	0.681818181818182	8	4-11,2655-2648;13-21,2646-2638	1-3,2658-2656[UP5];12-12,2647-2647[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAAGGUAACAAAGAUAAGUAC&UAUUUUAUCUUCGUUACCUUU	4	0.999999747732611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN373_c0_g1_2649_TPlot.pdf
TRINITY_DN373_c0_g1:2966	si_a37	TRINITY_DN373_c0_g1	2950	2975	2966	-40.10	-28.40	0.708229426433915	13	1-12,2975-2964;13-18,2958-2953	x-x,2963-2959[BULt];19-21,2952-2950[UP3]	...((((((.....((((((((((((&))))))))))))-----))))))...	GAAAGACCUCCAAAACCGGUCUUAGA&UCUAAGACCGGU-----AGGUCUAGG	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a37_TRINITY_DN373_c0_g1_2966_TPlot.pdf
TRINITY_DN373_c0_g1:2973	si_a30	TRINITY_DN373_c0_g1	2962	2982	2973	-32.70	-23.50	0.718654434250764	12	6-19,2977-2964	1-5,2982-2978[UP5];20-21,2963-2962[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAACCGGUCUUAGAAUCAAGC&UUUUAGUUCUAAGACCGGUAG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a30_TRINITY_DN373_c0_g1_2973_TPlot.pdf
TRINITY_DN373_c0_g1:2974	si_a29	TRINITY_DN373_c0_g1	2963	2983	2974	-31.00	-23.50	0.758064516129032	13	7-20,2977-2964	1-6,2983-2978[UP5];21-21,2963-2963[UP3]	.((((((((((((((......&......)))))))))))))).	AACCGGUCUUAGAAUCAAGCA&UUUUUAGUUCUAAGACCGGUA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN373_c0_g1_2974_TPlot.pdf
TRINITY_DN373_c0_g1:2976	si_a27	TRINITY_DN373_c0_g1	2965	2986	2976	-30.30	-21.90	0.722772277227723	6.5	1-4,2986-2983;5-7,2981-2979;9-21,2977-2965	x-x,2982-2982[BULt];8-8,2978-2978[SIL]	(((((((((((((.(((.((((&))))-))).)))))))))))))	CCGGUCUUAGAAUCAAGCAAUG&UAUU-UUUAGUUCUAAGACCGG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN373_c0_g1_2976_TPlot.pdf
TRINITY_DN373_c0_g1:4410	si_a753	TRINITY_DN373_c0_g1	4399	4421	4410	-33.10	-22.50	0.6797583081571	8.5	2-7,4420-4415;8-21,4412-4399	1-1,4421-4421[UP5];x-x,4414-4413[BULt]	((((((((((((((..((((((.&.))))))--))))))))))))))	AAGAACCUGAGGGAUUGGUUUAA&AUGAACC--UCCUUUGGGUUUUU	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN373_c0_g1_4410_TPlot.pdf
TRINITY_DN373_c0_g1:4477	si_a884	TRINITY_DN373_c0_g1	4466	4486	4477	-25.60	-16.70	0.65234375	8	1-4,4486-4483;6-9,4481-4478;11-19,4476-4468	5-5,4482-4482[SIL];10-10,4477-4477[SIL];20-21,4467-4466[UP3]	..(((((((((.((((.((((&)))).)))).)))))))))..	GGAUUGCUGUGAUGAUAGCAA&UUGCAAUCAAUAUAGUAAUAA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN373_c0_g1_4477_TPlot.pdf
TRINITY_DN373_c0_g3:805	si_a444	TRINITY_DN373_c0_g3	794	814	805	-29.30	-19.40	0.662116040955631	5.5	1-19,814-796	20-21,795-794[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUAACAAUUAUUUUAUAUUC&GGAUAUGAGAUAAUUGUUGUU	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN373_c0_g3_805_TPlot.pdf
TRINITY_DN373_c0_g3:806	si_a443	TRINITY_DN373_c0_g3	795	815	806	-30.00	-19.50	0.65	5	1-20,815-796	21-21,795-795[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UUAACAAUUAUUUUAUAUUCG&UGGAUAUGAGAUAAUUGUUGU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN373_c0_g3_806_TPlot.pdf
TRINITY_DN373_c4_g1:212	si_a323	TRINITY_DN373_c4_g1	201	221	212	-26.80	-18.20	0.67910447761194	8	1-6,221-216;8-16,214-206;18-20,204-202	7-7,215-215[SIL];17-17,205-205[SIL];21-21,201-201[UP3]	.(((.(((((((((.((((((&)))))).))))))))).))).	UAGGUGUAGGAGGAACAUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.999985394663513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN373_c4_g1_212_TPlot.pdf
TRINITY_DN373_c4_g1:281	si_s445	TRINITY_DN373_c4_g1	271	290	281	-21.10	-14.40	0.682464454976303	5	1-11,290-280;14-19,278-273	12-13,279-279[AILq];20-21,272-271[UP3]	..((((((.-(((((((((((&)))))))))))..))))))..	AUUUGUUGG-AUAUAUAAUAU&AUAUUAUAUAUAACAACAAUU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN373_c4_g1_281_TPlot.pdf
TRINITY_DN37403_c0_g1:154	si_a110	TRINITY_DN37403_c0_g1	143	163	154	-27.80	-19.50	0.701438848920863	8.5	2-8,162-156;10-18,154-146	1-1,163-163[UP5];9-9,155-155[SIL];19-21,145-143[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	AGCGCAAGCUCGAGUUUUGUG&GAUAAAAUACGAGCUUGUUUU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN37403_c0_g1_154_TPlot.pdf
TRINITY_DN37403_c0_g1:155	si_a109	TRINITY_DN37403_c0_g1	144	164	155	-28.50	-19.50	0.684210526315789	9.5	3-9,162-156;11-19,154-146	1-2,164-163[UP5];10-10,155-155[SIL];20-21,145-144[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	GCGCAAGCUCGAGUUUUGUGU&AGAUAAAAUACGAGCUUGUUU	1	0.0204845348617135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN37403_c0_g1_155_TPlot.pdf
TRINITY_DN37403_c0_g1:156	si_a108	TRINITY_DN37403_c0_g1	145	165	156	-28.50	-20.70	0.726315789473684	7.5	1-2,165-164;4-10,162-156;12-20,154-146	3-3,163-163[SIL];11-11,155-155[SIL];21-21,145-145[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	CGCAAGCUCGAGUUUUGUGUU&AAGAUAAAAUACGAGCUUGUU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN37403_c0_g1_156_TPlot.pdf
TRINITY_DN37442_c0_g2:2073	si_s76	TRINITY_DN37442_c0_g2	2061	2082	2073	-23.60	-20.40	0.864406779661017	3.5	2-14,2081-2069;15-21,2067-2061	1-1,2082-2082[UP5];x-x,2068-2068[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AAGAGAGAGAGAGAAAAAAAAG&AUUUUUUUUCUUUC-CUUUCUU	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN37442_c0_g2_2073_TPlot.pdf
TRINITY_DN37442_c0_g2:2078	si_s69	TRINITY_DN37442_c0_g2	2067	2087	2078	-23.40	-18.50	0.790598290598291	7	3-7,2085-2081;9-21,2079-2067	1-2,2087-2086[UP5];8-8,2080-2080[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGAGAGAAAAAAAAGAGGAA&AACUUCUAUUUUUUUUCUUUC	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN37442_c0_g2_2078_TPlot.pdf
TRINITY_DN37442_c0_g2:2079	si_s68	TRINITY_DN37442_c0_g2	2068	2088	2079	-23.10	-15.30	0.662337662337662	9	4-8,2085-2081;10-21,2079-2068	1-3,2088-2086[UP5];9-9,2080-2080[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGAGAGAAAAAAAAGAGGAAU&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN37442_c0_g2_2079_TPlot.pdf
TRINITY_DN3744_c0_g2:712	si_a336	TRINITY_DN3744_c0_g2	701	722	712	-31.20	-20.30	0.650641025641026	8	1-5,722-718;6-15,716-707;17-19,705-703	x-x,717-717[BULt];16-16,706-706[SIL];20-21,702-701[UP3]	..(((.((((((((((.(((((&)))))-)))))))))).)))..	UCGUUAUCGGGAUAAGCGGAUG&UAUUC-CUUGUCCCGAAAAUAU	2	0.989488553500752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN3744_c0_g2_712_TPlot.pdf
TRINITY_DN3747_c0_g1:1218	si_s195	TRINITY_DN3747_c0_g1	1207	1227	1218	-30.50	-20.80	0.681967213114754	5	1-11,1227-1217;14-20,1214-1208	12-13,1216-1215[SIL];21-21,1207-1207[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AUGGUACAACUCAAAAUAAUC&GAUUAUUUUGGAAUGUACCAG	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s195_TRINITY_DN3747_c0_g1_1218_TPlot.pdf
TRINITY_DN3747_c0_g1:1219	si_s194	TRINITY_DN3747_c0_g1	1208	1228	1219	-30.30	-20.70	0.683168316831683	4	2-12,1227-1217;15-21,1214-1208	1-1,1228-1228[UP5];13-14,1216-1215[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	UGGUACAACUCAAAAUAAUCA&CGAUUAUUUUGGAAUGUACCA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN3747_c0_g1_1219_TPlot.pdf
TRINITY_DN3747_c0_g1:1273	si_a404	TRINITY_DN3747_c0_g1	1262	1282	1273	-21.70	-15.10	0.695852534562212	5	1-11,1282-1272;13-16,1270-1267;18-21,1265-1262	12-12,1271-1271[SIL];17-17,1266-1266[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	UGAAAGUAACCAAAACAGUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.999999992294527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3747_c0_g1_1273_TPlot.pdf
TRINITY_DN3747_c0_g1:1274	si_a403	TRINITY_DN3747_c0_g1	1263	1283	1274	-22.00	-15.60	0.709090909090909	6.5	1-12,1283-1272;14-17,1270-1267	13-13,1271-1271[SIL];18-21,1266-1263[UP3]	....((((.((((((((((((&)))))))))))).))))....	GAAAGUAACCAAAACAGUUCU&AGAAUUGUUUUGUUUAUAUUU	4	0.999995989923084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3747_c0_g1_1274_TPlot.pdf
TRINITY_DN3747_c0_g1:1400	si_a452	TRINITY_DN3747_c0_g1	1389	1409	1400	-23.00	-15.40	0.669565217391304	10	1-13,1409-1397	14-21,1396-1389[UP3]	........(((((((((((((&)))))))))))))........	ACUAUCACAACGACAGUUAUC&GAUAAUUGUUGUUAUAUAUAA	4	0.999934925752249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN3747_c0_g1_1400_TPlot.pdf
TRINITY_DN3747_c0_g1:1805	si_s202	TRINITY_DN3747_c0_g1	1791	1819	1805	-33.60	-21.90	0.651785714285714	16.5	1-5,1819-1815;6-11,1809-1804;12-21,1800-1791	x-x,1814-1810[BULt];x-x,1803-1801[BULt]	((((((((((...((((((.....(((((&)))))-----))))))---))))))))))	AACACAACUGAAAGUACAUAAUUGUCCAG&UUGGA-----AUGUAC---CAGUUGUGUU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN3747_c0_g1_1805_TPlot.pdf
TRINITY_DN37486_c0_g1:239	si_s286	TRINITY_DN37486_c0_g1	228	248	239	-35.20	-23.10	0.65625	14.5	6-13,243-236;15-19,234-230	1-5,248-244[UP5];14-14,235-235[SIL];20-21,229-228[UP3]	..(((((.((((((((.....&.....)))))))).)))))..	UGCCGAUGGGCUGGGCAACCU&AAUACGCCUAGUCGAUUGGAA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN37486_c0_g1_239_TPlot.pdf
TRINITY_DN3748_c1_g3:1599	si_a835	TRINITY_DN3748_c1_g3	1585	1608	1599	-26.00	-17.30	0.665384615384615	9	1-7,1608-1602;9-11,1600-1598;12-20,1594-1586	8-8,1601-1601[SIL];x-x,1597-1595[BULt];21-21,1585-1585[UP3]	.(((((((((...(((.(((((((&))))))).)))---))))))))).	GAGCAACUUCAGGUAUAUUUUUUC&GAAAAAAAAUA---GAAGUUGCUA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN3748_c1_g3_1599_TPlot.pdf
TRINITY_DN37497_c0_g1:1048	si_a774	TRINITY_DN37497_c0_g1	1037	1056	1048	-29.20	-19.50	0.667808219178082	10	1-8,1056-1049;12-21,1046-1037	9-11,1048-1047[AILq]	((((((((((..-((((((((&))))))))...))))))))))	GAUAGAGGAGAC-AGUCGGUC&GAUUGAUUCAACUCUUCUAUU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN37497_c0_g1_1048_TPlot.pdf
TRINITY_DN37497_c0_g1:841	si_s898	TRINITY_DN37497_c0_g1	830	850	841	-30.70	-20.00	0.651465798045603	10	1-14,850-837	15-21,836-830[UP3]	.......((((((((((((((&)))))))))))))).......	CAGUGCUUUGGAGAGAAGGUC&GGCUUUCUCUUCAAUUUCAAU	4	0.999999999778771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN37497_c0_g1_841_TPlot.pdf
TRINITY_DN37497_c0_g1:845	si_s894	TRINITY_DN37497_c0_g1	834	854	845	-29.10	-20.00	0.687285223367698	12.5	5-18,850-837	1-4,854-851[UP5];19-21,836-834[UP3]	...((((((((((((((....&....))))))))))))))...	GCUUUGGAGAGAAGGUCGACA&AAUAGGCUUUCUCUUCAAUUU	2	0.99870110772865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN37497_c0_g1_845_TPlot.pdf
TRINITY_DN3749_c0_g1:4331	si_a193	TRINITY_DN3749_c0_g1	4321	4340	4331	-30.90	-20.40	0.660194174757282	7	1-11,4340-4330;13-19,4329-4323	12-12,x-x[BULq];20-21,4322-4321[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	GGUGUUGGU-AAUGGGGAAAG&CUUUCCCUGUUCACUAAUAAA	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN3749_c0_g1_4331_TPlot.pdf
TRINITY_DN3749_c0_g1:5358	si_a71	TRINITY_DN3749_c0_g1	5348	5367	5358	-23.30	-15.30	0.656652360515022	7	1-5,5367-5363;8-15,5360-5353;17-21,5352-5348	6-7,5362-5361[SIL];16-16,x-x[BULq]	(((((-((((((((..(((((&)))))..)))))))).)))))	UGAUG-AAGGCAAUGAGAAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3749_c0_g1_5358_TPlot.pdf
TRINITY_DN3749_c0_g1:5374	si_s76	TRINITY_DN3749_c0_g1	5361	5383	5374	-23.60	-15.80	0.669491525423729	8.5	4-14,5380-5370;15-21,5367-5361	1-3,5383-5381[UP5];x-x,5369-5368[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	GAGAAAGAUGAAAGGAAAAAUAG&AUUUUUUUUCUUUC--CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3749_c0_g1_5374_TPlot.pdf
TRINITY_DN3749_c0_g1:6616	si_a283	TRINITY_DN3749_c0_g1	6605	6625	6616	-28.30	-19.00	0.671378091872792	15	5-17,6621-6609	1-4,6625-6622[UP5];18-21,6608-6605[UP3]	....(((((((((((((....&....)))))))))))))....	AUUUGGUCCAGGUGGUCAAGA&AAAAGAUCGCUUGGAUUUAAA	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN3749_c0_g1_6616_TPlot.pdf
TRINITY_DN3749_c0_g1:6639	si_a284	TRINITY_DN3749_c0_g1	6628	6648	6639	-28.30	-19.00	0.671378091872792	14	4-16,6645-6633	1-3,6648-6646[UP5];17-21,6632-6628[UP3]	.....(((((((((((((...&...))))))))))))).....	AAUUUGGUCCAGGUGGUCAAG&AAAGAUCGCUUGGAUUUAAAA	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN3749_c0_g1_6639_TPlot.pdf
TRINITY_DN3749_c0_g1:7241	si_s314	TRINITY_DN3749_c0_g1	7231	7254	7241	-31.50	-20.60	0.653968253968254	10.5	1-9,7254-7246;10-18,7241-7233;20-21,7232-7231	x-x,7245-7242[BULt];19-19,x-x[BULq]	((-(((((((((....(((((((((&)))))))))----))))))))).))	UG-AACAGGAGGUGCAGACAGAAUU&AAUUCUGUC----CUUCUUGUUACA	4	0.999999945240273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN3749_c0_g1_7241_TPlot.pdf
TRINITY_DN3749_c0_g1:7288	si_s315	TRINITY_DN3749_c0_g1	7277	7297	7288	-31.60	-21.50	0.680379746835443	7.5	3-6,7295-7292;8-16,7290-7282;19-21,7279-7277	1-2,7297-7296[UP5];7-7,7291-7291[SIL];17-18,7281-7280[SIL]	(((..(((((((((.((((..&..)))).)))))))))..)))	UUGGAACAGGAAGGCCAGAUA&AUUCUGUCCUUCUUGUUACAA	2	0.991702220255531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN3749_c0_g1_7288_TPlot.pdf
TRINITY_DN3749_c0_g1:7414	si_s76	TRINITY_DN3749_c0_g1	7403	7423	7414	-23.60	-16.20	0.686440677966102	12	5-7,7419-7417;9-20,7415-7404	1-4,7423-7420[UP5];8-8,7416-7416[SIL];21-21,7403-7403[UP3]	.((((((((((((.(((....&....))).)))))))))))).	UAGGAGGGAAAGAUAGAUUUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3749_c0_g1_7414_TPlot.pdf
TRINITY_DN374_c0_g1:2499	si_a141	TRINITY_DN374_c0_g1	2488	2508	2499	-23.80	-16.00	0.672268907563025	15.5	7-21,2502-2488	1-6,2508-2503[UP5]	(((((((((((((((......&......)))))))))))))))	UGAGGCGGCGAUGAUGGGAUG&UAAUUAAUCGUUGUUGUUUUA	2	0.999998159298689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN374_c0_g1_2499_TPlot.pdf
TRINITY_DN37512_c0_g2:392	si_s705	TRINITY_DN37512_c0_g2	380	401	392	-31.40	-22.00	0.700636942675159	6.5	1-12,401-390;13-19,388-382	x-x,389-389[BULt];20-21,381-380[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	GACUCUGUUGCAUUAAUGAAUC&GAUUUAUUAGUG-AACAGGGAA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN37512_c0_g2_392_TPlot.pdf
TRINITY_DN3752_c0_g1:1217	si_a416	TRINITY_DN3752_c0_g1	1206	1226	1217	-20.50	-15.50	0.75609756097561	5.5	1-10,1226-1217;12-20,1215-1207	11-11,1216-1216[SIL];21-21,1206-1206[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	ACUGUAUUUACUUAAAUGUGA&UUAUAUUUAAAUAAAUAUAGG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN3752_c0_g1_1217_TPlot.pdf
TRINITY_DN37531_c0_g1:125	si_s618	TRINITY_DN37531_c0_g1	113	134	125	-30.30	-19.80	0.653465346534653	5	1-9,134-126;11-12,124-123;14-17,121-118;18-21,116-113	10-10,125-125[SIL];13-13,122-122[SIL];x-x,117-117[BULt]	((((.((((.((.(((((((((&))))))))).)).))))-))))	GAAAUGGAUGGCGUGGAUUUAG&UUAAAUCCAAGCGAUCU-UUUC	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN37531_c0_g1_125_TPlot.pdf
TRINITY_DN3753_c0_g1:547	si_s76	TRINITY_DN3753_c0_g1	536	556	547	-23.60	-15.80	0.669491525423729	11	5-16,552-541;19-21,538-536	1-4,556-553[UP5];17-18,540-539[SIL]	(((..((((((((((((....&....))))))))))))..)))	AAGUUAGGAAAGAAAGGUUUA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3753_c0_g1_547_TPlot.pdf
TRINITY_DN3753_c0_g1:824	si_s76	TRINITY_DN3753_c0_g1	812	833	824	-23.60	-16.40	0.694915254237288	11.5	4-11,830-823;12-20,821-813	1-3,833-831[UP5];x-x,822-822[BULt];21-21,812-812[UP3]	.(((((((((.((((((((...&...))))))))-))))))))).	UGGAAAGGAAUAGGAAGGACAA&AUUUUUUUUCU-UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3753_c0_g1_824_TPlot.pdf
TRINITY_DN3753_c0_g1:825	si_s75	TRINITY_DN3753_c0_g1	813	834	825	-24.00	-16.40	0.683333333333333	12.5	5-12,830-823;13-21,821-813	1-4,834-831[UP5];x-x,822-822[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	GGAAAGGAAUAGGAAGGACAAA&UAUUUUUUUUCU-UUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3753_c0_g1_825_TPlot.pdf
TRINITY_DN3754_c0_g1:424	si_a418	TRINITY_DN3754_c0_g1	413	433	424	-21.20	-14.30	0.674528301886792	9.5	5-20,429-414	1-4,433-430[UP5];21-21,413-413[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUUCUGUGUUUAUUUAACACA&AUAUUUAAAUAAAUAUAGGAU	2	0.918052453677541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN3754_c0_g1_424_TPlot.pdf
TRINITY_DN3754_c0_g1:445	si_a231	TRINITY_DN3754_c0_g1	434	454	445	-26.90	-18.80	0.698884758364312	7	1-7,454-448;9-19,446-436	8-8,447-447[SIL];20-21,435-434[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	UACGAAUUGAUUGAAGGAAUA&UGUUUCUAUAAUCAAUUCGAU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN3754_c0_g1_445_TPlot.pdf
TRINITY_DN3754_c0_g1:446	si_a230	TRINITY_DN3754_c0_g1	435	455	446	-26.90	-18.80	0.698884758364312	7	2-8,454-448;10-20,446-436	1-1,455-455[UP5];9-9,447-447[SIL];21-21,435-435[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	ACGAAUUGAUUGAAGGAAUAA&AUGUUUCUAUAAUCAAUUCGA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN3754_c0_g1_446_TPlot.pdf
TRINITY_DN3754_c0_g1:907	si_s670	TRINITY_DN3754_c0_g1	893	916	907	-26.90	-19.60	0.728624535315985	10.5	1-10,916-907;11-19,903-895	x-x,906-904[BULt];20-21,894-893[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	AAGUUUCUGUAACAGUCAAUUUGA&UCGAAUUGAU---UAUAGAAACAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s670_TRINITY_DN3754_c0_g1_907_TPlot.pdf
TRINITY_DN3754_c0_g1:909	si_s668	TRINITY_DN3754_c0_g1	895	918	909	-28.20	-19.10	0.677304964539007	11.5	3-12,916-907;13-21,903-895	1-2,918-917[UP5];x-x,906-904[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	GUUUCUGUAACAGUCAAUUUGAAU&GAUCGAAUUGAU---UAUAGAAAC	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s668_TRINITY_DN3754_c0_g1_909_TPlot.pdf
TRINITY_DN37552_c0_g1:397	si_a123	TRINITY_DN37552_c0_g1	385	407	397	-26.60	-17.40	0.654135338345865	10	1-4,407-404;5-13,402-394;15-19,391-387	x-x,403-403[BULt];14-14,393-392[AILt];20-21,386-385[UP3]	..(((((..(((((((((.((((&))))-)))))))))-.)))))..	UAGCUGUAGGCUAUGGAAUCGAG&CUUG-UUUUAUAGC-AAUAGUAA	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN37552_c0_g1_397_TPlot.pdf
TRINITY_DN3755_c1_g1:2286	si_s73	TRINITY_DN3755_c1_g1	2275	2294	2286	-24.00	-17.50	0.729166666666667	7	1-3,2294-2292;5-18,2291-2278	4-4,x-x[BULq];19-21,2277-2275[UP3]	...((((((((((((((-(((&))).))))))))))))))...	CAUGGAAAGAAAGAAGA-AGA&UCUAUUUUUUUUCUUUCCUUU	3	0.99999999999862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3755_c1_g1_2286_TPlot.pdf
TRINITY_DN3755_c1_g1:2593	si_a181	TRINITY_DN3755_c1_g1	2582	2608	2593	-32.00	-21.50	0.671875	17	1-7,2608-2602;8-20,2595-2583	x-x,2601-2596[BULt];21-21,2582-2582[UP3]	.(((((((((((((......(((((((&)))))))------))))))))))))).	AAGGGAAAGGUGUUUUUGAGGUUUAGA&UCUAGAU------AAUAUCUUUCCCUG	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN3755_c1_g1_2593_TPlot.pdf
TRINITY_DN3755_c1_g1:2633	si_a208	TRINITY_DN3755_c1_g1	2623	2642	2633	-24.20	-16.60	0.685950413223141	10	5-18,2638-2625;20-21,2624-2623	1-4,2642-2639[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	GG-UUAGUUGGUCGAUUGUUC&AAUAAAUCGACUAAUUAAACU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a208_TRINITY_DN3755_c1_g1_2633_TPlot.pdf
TRINITY_DN3755_c1_g1:2636	si_a205	TRINITY_DN3755_c1_g1	2625	2646	2636	-24.70	-17.30	0.700404858299595	11	1-3,2646-2644;8-21,2638-2625	4-7,2643-2639[AILt]	((((((((((((((.....(((&)))-....))))))))))))))	UUAGUUGGUCGAUUGUUCGAGU&ACU-AAUAAAUCGACUAAUUAA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN3755_c1_g1_2636_TPlot.pdf
TRINITY_DN3755_c1_g1:453	si_a356	TRINITY_DN3755_c1_g1	442	462	453	-26.90	-17.90	0.66542750929368	10	5-12,458-451;14-21,449-442	1-4,462-459[UP5];13-13,450-450[SIL]	((((((((.((((((((....&....)))))))).))))))))	GUCUGAUCCAGAUAGAAGGCA&UUAAUUCUAUUUUGAUCGGAU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN3755_c1_g1_453_TPlot.pdf
TRINITY_DN3755_c1_g1:701	si_s202	TRINITY_DN3755_c1_g1	689	709	701	-33.60	-24.70	0.735119047619048	5.5	1-6,709-704;8-15,703-696;16-20,694-690	7-7,x-x[BULq];x-x,695-695[BULt];21-21,689-689[UP3]	.(((((.((((((((-((((((&)))))).))))))))-))))).	UACACAGACUGGUGC-UUCCAG&UUGGAAUGUACCAGU-UGUGUU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN3755_c1_g1_701_TPlot.pdf
TRINITY_DN37589_c0_g1:20	si_a326	TRINITY_DN37589_c0_g1	8	29	20	-26.20	-19.70	0.751908396946565	5.5	2-8,28-22;10-14,20-16;15-21,14-8	1-1,29-29[UP5];9-9,21-21[SIL];x-x,15-15[BULt]	(((((((.(((((.(((((((.&.))))))).)))))-)))))))	GACAAGGUAGUGAUAAAAUCAC&AUGAUUUUUUUAUU-CCUUGUC	0	0.0662445382798851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN37589_c0_g1_20_TPlot.pdf
TRINITY_DN3759_c0_g1:991	si_s446	TRINITY_DN3759_c0_g1	980	1000	991	-21.30	-14.40	0.676056338028169	8	1-3,1000-998;5-17,996-984	4-4,997-997[SIL];18-21,983-980[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AAGAUGUUGUUAUGUGUCAUA&UAUUAUAUAUAACAACAAUUA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN3759_c0_g1_991_TPlot.pdf
TRINITY_DN3759_c1_g3:3557	si_a755	TRINITY_DN3759_c1_g3	3545	3570	3557	-34.90	-24.70	0.707736389684814	13	1-6,3570-3565;7-17,3560-3550;19-21,3547-3545	x-x,3564-3561[BULt];18-18,3549-3548[AILt]	(((..(((((((((((....((((((&))))))----)))))))))))-.)))	UCACCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUU-UUGA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN3759_c1_g3_3557_TPlot.pdf
TRINITY_DN3760_c0_g1:1072	si_s811	TRINITY_DN3760_c0_g1	1061	1081	1072	-26.40	-17.50	0.662878787878788	13.5	4-16,1078-1066	1-3,1081-1079[UP5];17-21,1065-1061[UP3]	.....(((((((((((((...&...))))))))))))).....	CUGGAAGGAGGAGGUGACACG&UUCGUUACCUUUUCUUAAUAA	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN3760_c0_g1_1072_TPlot.pdf
TRINITY_DN3760_c0_g1:336	si_s892	TRINITY_DN3760_c0_g1	325	345	336	-29.50	-20.00	0.677966101694915	7.5	2-17,344-329	1-1,345-345[UP5];18-21,328-325[UP3]	....((((((((((((((((.&.))))))))))))))))....	CCAAAGGAGAGAGUCUAUUUU&UAAAUAGGCUUUCUCUUCAAU	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN3760_c0_g1_336_TPlot.pdf
TRINITY_DN3760_c0_g1:338	si_s890	TRINITY_DN3760_c0_g1	327	347	338	-29.50	-20.00	0.677966101694915	9	4-19,344-329	1-3,347-345[UP5];20-21,328-327[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAGGAGAGAGUCUAUUUUGU&AAUAAAUAGGCUUUCUCUUCA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN3760_c0_g1_338_TPlot.pdf
TRINITY_DN3760_c0_g1:339	si_s889	TRINITY_DN3760_c0_g1	328	348	339	-28.80	-20.00	0.694444444444444	10	5-20,344-329	1-4,348-345[UP5];21-21,328-328[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGGAGAGAGUCUAUUUUGUC&AAAUAAAUAGGCUUUCUCUUC	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3760_c0_g1_339_TPlot.pdf
TRINITY_DN3760_c0_g1:340	si_s888	TRINITY_DN3760_c0_g1	329	349	340	-26.80	-20.00	0.746268656716418	11	6-21,344-329	1-5,349-345[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGGAGAGAGUCUAUUUUGUCU&AAAAUAAAUAGGCUUUCUCUU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN3760_c0_g1_340_TPlot.pdf
TRINITY_DN3760_c0_g1:341	si_s887	TRINITY_DN3760_c0_g1	330	350	341	-26.80	-19.20	0.716417910447761	12.5	7-21,344-330	1-6,350-345[UP5]	(((((((((((((((......&......)))))))))))))))	GGAGAGAGUCUAUUUUGUCUU&AAAAAUAAAUAGGCUUUCUCU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN3760_c0_g1_341_TPlot.pdf
TRINITY_DN3760_c0_g1:975	si_s69	TRINITY_DN3760_c0_g1	961	984	975	-23.40	-15.80	0.675213675213675	7	1-7,984-978;9-14,976-971;15-21,967-961	8-8,977-977[SIL];x-x,970-968[BULt]	(((((((...((((((.(((((((&))))))).))))))---)))))))	GGAAGAAAUGGAAGAAAAGAAGUU&AACUUCUAUUUUUU---UUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3760_c0_g1_975_TPlot.pdf
TRINITY_DN3760_c0_g1:976	si_s68	TRINITY_DN3760_c0_g1	962	985	976	-23.10	-16.40	0.70995670995671	7	1-8,985-978;10-15,976-971;16-21,967-962	9-9,977-977[SIL];x-x,970-968[BULt]	((((((...((((((.((((((((&)))))))).))))))---))))))	GAAGAAAUGGAAGAAAAGAAGUUG&CAACUUCUAUUUUUU---UUCUUU	2	0.999994286989086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3760_c0_g1_976_TPlot.pdf
TRINITY_DN37611_c0_g1:58	si_a392	TRINITY_DN37611_c0_g1	47	67	58	-22.80	-16.10	0.706140350877193	7	1-8,67-60;11-21,57-47	9-10,59-58[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	GAAUAAUUCUAGUUUUUUAGU&AUUAAGAAUAUAGAAUUGUUU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN37611_c0_g1_58_TPlot.pdf
TRINITY_DN3761_c0_g1:1421	si_a606	TRINITY_DN3761_c0_g1	1410	1431	1421	-32.60	-21.80	0.668711656441718	8	2-6,1430-1426;7-12,1424-1419;15-19,1416-1412	1-1,1431-1431[UP5];x-x,1425-1425[BULt];13-14,1418-1417[SIL];20-21,1411-1410[UP3]	..(((((..((((((.(((((.&.)))))-))))))..)))))..	UCGUCGAGAGGAAUUGGCGAGU&UUUCGC-AAUUCCAAUCGACUA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN3761_c0_g1_1421_TPlot.pdf
TRINITY_DN3761_c0_g1:1423	si_a604	TRINITY_DN3761_c0_g1	1412	1433	1423	-31.60	-21.50	0.680379746835443	10	4-8,1430-1426;9-14,1424-1419;17-21,1416-1412	1-3,1433-1431[UP5];x-x,1425-1425[BULt];15-16,1418-1417[SIL]	(((((..((((((.(((((...&...)))))-))))))..)))))	GUCGAGAGGAAUUGGCGAGUGC&AUUUUCGC-AAUUCCAAUCGAC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN3761_c0_g1_1423_TPlot.pdf
TRINITY_DN3761_c0_g1:1690	si_a145	TRINITY_DN3761_c0_g1	1679	1700	1690	-28.10	-19.20	0.683274021352313	8.5	3-9,1698-1692;10-20,1690-1680	1-2,1700-1699[UP5];x-x,1691-1691[BULt];21-21,1679-1679[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	UUCUUGAAGCAAUCGACGAUCU&UAAUCGUUG-UUGUUUUAAGGU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN3761_c0_g1_1690_TPlot.pdf
TRINITY_DN3761_c0_g1:8059	si_a638	TRINITY_DN3761_c0_g1	8048	8068	8059	-24.40	-16.60	0.680327868852459	11	1-5,8068-8064;7-16,8062-8053	6-6,8063-8063[SIL];17-21,8052-8048[UP3]	.....((((((((((.(((((&))))).)))))))))).....	AAAAAUACUCGGAGAUGUCGA&UCGAUUUUUUUGAGUAAUAUA	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN3761_c0_g1_8059_TPlot.pdf
TRINITY_DN3761_c0_g1:8062	si_a635	TRINITY_DN3761_c0_g1	8051	8072	8062	-26.10	-17.80	0.681992337164751	10	1-3,8072-8070;4-8,8068-8064;10-19,8062-8053	x-x,8069-8069[BULt];9-9,8063-8063[SIL];20-21,8052-8051[UP3]	..((((((((((.(((((.(((&)))-))))).))))))))))..	AAUACUCGGAGAUGUCGAGCGU&AUG-UCGAUUUUUUUGAGUAAU	4	0.999999908254907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN3761_c0_g1_8062_TPlot.pdf
TRINITY_DN3761_c0_g1:8063	si_a634	TRINITY_DN3761_c0_g1	8052	8073	8063	-26.40	-19.10	0.723484848484849	9	1-4,8073-8070;5-9,8068-8064;11-20,8062-8053	x-x,8069-8069[BULt];10-10,8063-8063[SIL];21-21,8052-8052[UP3]	.((((((((((.(((((.((((&))))-))))).)))))))))).	AUACUCGGAGAUGUCGAGCGUA&UAUG-UCGAUUUUUUUGAGUAA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN3761_c0_g1_8063_TPlot.pdf
TRINITY_DN3761_c0_g1:8064	si_a633	TRINITY_DN3761_c0_g1	8053	8074	8064	-26.40	-19.30	0.731060606060606	8	1-5,8074-8070;6-10,8068-8064;12-21,8062-8053	x-x,8069-8069[BULt];11-11,8063-8063[SIL]	((((((((((.(((((.(((((&)))))-))))).))))))))))	UACUCGGAGAUGUCGAGCGUAG&UUAUG-UCGAUUUUUUUGAGUA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3761_c0_g1_8064_TPlot.pdf
TRINITY_DN3761_c0_g1:8383	si_a666	TRINITY_DN3761_c0_g1	8372	8392	8383	-31.60	-21.50	0.680379746835443	12.5	3-15,8390-8378	1-2,8392-8391[UP5];16-21,8377-8372[UP3]	......(((((((((((((..&..)))))))))))))......	CUCCCCGGGGUCGAUGGGCGC&AUGCCUAUUGAUUCCUUAUUC	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN3761_c0_g1_8383_TPlot.pdf
TRINITY_DN3761_c0_g1:8385	si_a664	TRINITY_DN3761_c0_g1	8374	8394	8385	-29.60	-21.50	0.726351351351351	14	5-17,8390-8378	1-4,8394-8391[UP5];18-21,8377-8374[UP3]	....(((((((((((((....&....)))))))))))))....	CCCCGGGGUCGAUGGGCGCAU&AAAUGCCUAUUGAUUCCUUAU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN3761_c0_g1_8385_TPlot.pdf
TRINITY_DN3761_c0_g1:8386	si_a663	TRINITY_DN3761_c0_g1	8375	8395	8386	-31.40	-22.10	0.703821656050955	11	1-2,8395-8394;5-18,8391-8378	3-4,8393-8392[SIL];19-21,8377-8375[UP3]	...((((((((((((((..((&))..))))))))))))))...	CCCGGGGUCGAUGGGCGCAUC&GAAAUGCCUAUUGAUUCCUUA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN3761_c0_g1_8386_TPlot.pdf
TRINITY_DN3761_c0_g1:8544	si_a734	TRINITY_DN3761_c0_g1	8532	8561	8544	-42.40	-28.00	0.660377358490566	23	1-7,8561-8555;8-12,8546-8542;13-19,8540-8534	x-x,8554-8547[BULt];x-x,8541-8541[BULt];20-21,8533-8532[UP3]	..(((((((.(((((........(((((((&)))))))--------)))))-)))))))..	CGGGCCAGGCGGUAGCACAAUAUAGGUGUC&GGCAUCU--------UUACC-CCUGGCCAU	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN3761_c0_g1_8544_TPlot.pdf
TRINITY_DN3761_c0_g1:8826	si_a642	TRINITY_DN3761_c0_g1	8816	8835	8826	-25.90	-16.92	0.653281853281853	6.5	1-14,8835-8822;19-21,8818-8816	15-18,8821-8819[AILq]	(((...-((((((((((((((&))))))))))))))....)))	CCGCAG-AUUGCUCAAAAGAG&UUUUUUUGAGUAAUAUAUCGG	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN3761_c0_g1_8826_TPlot.pdf
TRINITY_DN3761_c0_g1:9437	si_s327	TRINITY_DN3761_c0_g1	9426	9446	9437	-28.70	-19.20	0.668989547038327	7.5	1-15,9446-9432;17-19,9430-9428	16-16,9431-9431[SIL];20-21,9427-9426[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	CAGGUGGUGUGUUUGUGAUGA&UUGUUACAAACAUACGAUUCA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s327_TRINITY_DN3761_c0_g1_9437_TPlot.pdf
TRINITY_DN37623_c0_g1:499	si_s35	TRINITY_DN37623_c0_g1	489	508	499	-24.00	-16.40	0.683333333333333	5	2-6,507-503;8-16,501-493;18-21,492-489	1-1,508-508[UP5];7-7,502-502[SIL];17-17,x-x[BULq]	((((-(((((((((.(((((.&.))))).))))))))).))))	CCAA-UAUUAAAGAAUUGGUG&AACUAAAUCUUUAAUAAUUGG	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN37623_c0_g1_499_TPlot.pdf
TRINITY_DN3763_c0_g1:688	si_s61	TRINITY_DN3763_c0_g1	677	697	688	-26.50	-17.60	0.664150943396226	12.5	5-17,693-681	1-4,697-694[UP5];18-21,680-677[UP3]	....(((((((((((((....&....)))))))))))))....	ACACAUGGAGGUUGCUAUUUA&AAGUUAGCAACUUCUAUUUUU	4	0.999961952797637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN3763_c0_g1_688_TPlot.pdf
TRINITY_DN37644_c0_g2:108	si_s82	TRINITY_DN37644_c0_g2	96	117	108	-28.90	-21.60	0.747404844290658	10	3-11,115-107;12-19,105-98	1-2,117-116[UP5];x-x,106-106[BULt];20-21,97-96[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	AUGAGGAGGGUAAGGAGAGACC&UUUCUUUCCUU-UCUUCUUCUU	4	0.999999999022058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN37644_c0_g2_108_TPlot.pdf
TRINITY_DN37644_c0_g2:111	si_s75	TRINITY_DN37644_c0_g2	99	120	111	-24.00	-15.60	0.65	14	6-14,115-107;15-21,105-99	1-5,120-116[UP5];x-x,106-106[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	AGGAGGGUAAGGAGAGACCACU&UAUUUUUUUUCUUU-CCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN37644_c0_g2_111_TPlot.pdf
TRINITY_DN37644_c0_g2:71	si_s654	TRINITY_DN37644_c0_g2	60	80	71	-38.60	-26.30	0.681347150259067	6	1-5,80-76;8-20,73-61	6-7,75-74[SIL];21-21,60-60[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	CUCGAUUCUCCGAUAUUAUCG&CGAUACAAUCGGGGGAUCGAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s654_TRINITY_DN37644_c0_g2_71_TPlot.pdf
TRINITY_DN37644_c0_g2:72	si_s653	TRINITY_DN37644_c0_g2	61	81	72	-39.50	-26.20	0.663291139240506	5.5	1-6,81-76;9-21,73-61	7-8,75-74[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UCGAUUCUCCGAUAUUAUCGG&UCGAUACAAUCGGGGGAUCGA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s653_TRINITY_DN37644_c0_g2_72_TPlot.pdf
TRINITY_DN37644_c0_g2:73	si_s652	TRINITY_DN37644_c0_g2	62	82	73	-40.20	-26.60	0.661691542288557	6	1-7,82-76;10-21,73-62	8-9,75-74[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	CGAUUCUCCGAUAUUAUCGGG&CUCGAUACAAUCGGGGGAUCG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s652_TRINITY_DN37644_c0_g2_73_TPlot.pdf
TRINITY_DN3764_c0_g1:1157	si_a72	TRINITY_DN3764_c0_g1	1146	1166	1157	-21.90	-14.80	0.675799086757991	6	3-15,1164-1152;17-21,1150-1146	1-2,1166-1165[UP5];16-16,1151-1151[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AUAGUAAAGAACGAUUUGAUA&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999914403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN3764_c0_g1_1157_TPlot.pdf
TRINITY_DN37651_c0_g1:2236	si_s485	TRINITY_DN37651_c0_g1	2224	2245	2236	-18.10	-12.10	0.668508287292818	4.5	1-4,2245-2242;6-16,2240-2230;17-21,2228-2224	5-5,2241-2241[SIL];x-x,2229-2229[BULt]	(((((.(((((((((((.((((&)))).)))))))))))-)))))	UUUAUCGUUUGAAUAAAAAUAG&CUAUAUUUAUUUAAAU-AUAAA	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN37651_c0_g1_2236_TPlot.pdf
TRINITY_DN37651_c1_g1:31	si_a18	TRINITY_DN37651_c1_g1	19	40	31	-26.30	-18.00	0.684410646387833	8	3-10,38-31;11-13,29-27;15-21,25-19	1-2,40-39[UP5];x-x,30-30[BULt];14-14,26-26[SIL]	(((((((.(((.((((((((..&..))))))))-))).)))))))	GGACUAGUAGUCAAAUAGGCGA&AAGCCUAUUU-AUUUUUAGUUC	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN37651_c1_g1_31_TPlot.pdf
TRINITY_DN37687_c0_g1:72	si_a13	TRINITY_DN37687_c0_g1	61	82	72	-26.80	-17.50	0.652985074626866	9.5	1-9,82-74;10-14,72-68	x-x,73-73[BULt];15-21,67-61[UP3]	.......(((((.(((((((((&)))))))))-))))).......	GCCUCUCAGUAGUGCUUUCUCU&AGAGAAAGC-CUAUUUAUUUUU	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN37687_c0_g1_72_TPlot.pdf
TRINITY_DN37687_c0_g1:74	si_a12	TRINITY_DN37687_c0_g1	62	83	74	-26.80	-17.80	0.664179104477612	9.5	2-10,82-74;11-15,72-68	1-1,83-83[UP5];x-x,73-73[BULt];16-21,67-62[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	CCUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN37687_c0_g1_74_TPlot.pdf
TRINITY_DN3769_c0_g1:2866	si_s88	TRINITY_DN3769_c0_g1	2852	2875	2866	-34.80	-23.12	0.664367816091954	15	1-4,2875-2872;6-10,2870-2866;13-21,2860-2852	5-5,2871-2871[SIL];11-12,2865-2861[AILt]	(((((((((.....(((((.((((&)))).)))))---..)))))))))	GAGGCGAGGUGCACGGAGACGGGA&UCCUUUCUUC---UUCUUCGCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3769_c0_g1_2866_TPlot.pdf
TRINITY_DN3769_c0_g1:3476	si_s89	TRINITY_DN3769_c0_g1	3464	3486	3476	-35.30	-23.80	0.674220963172805	6.5	1-8,3486-3479;9-15,3477-3471;17-18,3469-3468;19-21,3466-3464	x-x,3478-3478[BULt];16-16,3470-3470[SIL];x-x,3467-3467[BULt]	(((.((.(((((((.((((((((&))))))))-))))))).))-)))	CGAUGGAGAAGGAGAAAGAGAGG&CCUUUCUU-CUUCUUCGCU-UCG	4	0.99999999999534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3769_c0_g1_3476_TPlot.pdf
TRINITY_DN3769_c0_g1:3478	si_s84	TRINITY_DN3769_c0_g1	3467	3488	3478	-32.30	-26.70	0.826625386996904	6	1-6,3488-3483;7-20,3481-3468	x-x,3482-3482[BULt];21-21,3467-3467[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	UGGAGAAGGAGAAAGAGAGGGA&UCUUUC-CUUUCUUCUUCUUCG	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3769_c0_g1_3478_TPlot.pdf
TRINITY_DN3769_c0_g1:3480	si_s82	TRINITY_DN3769_c0_g1	3469	3490	3480	-28.90	-25.60	0.885813148788927	6	1-8,3490-3483;9-21,3481-3469	x-x,3482-3482[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	GAGAAGGAGAAAGAGAGGGAGA&UUUCUUUC-CUUUCUUCUUCUU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3769_c0_g1_3480_TPlot.pdf
TRINITY_DN376_c0_g1:566	si_a494	TRINITY_DN376_c0_g1	554	575	566	-29.50	-19.60	0.664406779661017	14.5	6-10,570-566;12-21,563-554	1-5,575-571[UP5];11-11,565-564[AILt]	((((((((((..(((((.....&.....)))))-.))))))))))	GAAGGCGAAGCCACGACGCGAA&AAUAUGUCGU-UUUUCGUCUUC	4	0.999999999993905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN376_c0_g1_566_TPlot.pdf
TRINITY_DN3770_c0_g1:811	si_s682	TRINITY_DN3770_c0_g1	800	820	811	-26.60	-17.80	0.669172932330827	6	1-8,820-813;10-21,811-800	9-9,812-812[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	CUAGUUGAAUUUUUGUUUUUA&UAGAAACAUGAGUUUAAUUAG	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s682_TRINITY_DN3770_c0_g1_811_TPlot.pdf
TRINITY_DN3771_c0_g1:346	si_s12	TRINITY_DN3771_c0_g1	335	355	346	-22.80	-15.80	0.692982456140351	8.5	2-17,354-339	1-1,355-355[UP5];18-21,338-335[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGGAGUAUGGUGAUGAUAAA&CUUAUUAUUACUAUAUUGAUU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN3771_c0_g1_346_TPlot.pdf
TRINITY_DN37727_c0_g1:633	si_a409	TRINITY_DN37727_c0_g1	622	642	633	-19.50	-12.70	0.651282051282051	9.5	1-15,642-628	16-21,627-622[UP3]	......(((((((((((((((&)))))))))))))))......	UAUAAAGAAUAUAGAUGAAAC&GUUUUGUUUAUAUUUAAAUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN37727_c0_g1_633_TPlot.pdf
TRINITY_DN37727_c0_g1:635	si_a407	TRINITY_DN37727_c0_g1	624	644	635	-19.80	-12.90	0.651515151515151	10.5	3-17,642-628	1-2,644-643[UP5];18-21,627-624[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAAAGAAUAUAGAUGAAACUA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN37727_c0_g1_635_TPlot.pdf
TRINITY_DN37727_c0_g1:637	si_a405	TRINITY_DN37727_c0_g1	626	646	637	-19.80	-12.90	0.651515151515151	12.5	5-19,642-628	1-4,646-643[UP5];20-21,627-626[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAGAAUAUAGAUGAAACUAUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN37727_c0_g1_637_TPlot.pdf
TRINITY_DN3772_c0_g1:4029	si_s97	TRINITY_DN3772_c0_g1	4018	4038	4029	-36.30	-24.10	0.663911845730028	8	1-11,4038-4028;13-17,4026-4022;19-19,4020-4020	12-12,4027-4027[SIL];18-18,4021-4021[SIL];20-21,4019-4018[UP3]	..(.(((((.(((((((((((&))))))))))).))))).)..	GACGGGUCCAAAGCGGAGAGG&CUUCUUCGCUUCGGAUUGGAA	2	0.995709762510726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN3772_c0_g1_4029_TPlot.pdf
TRINITY_DN3772_c0_g1:4039	si_a58	TRINITY_DN3772_c0_g1	4028	4052	4039	-34.60	-22.50	0.65028901734104	15	1-8,4052-4045;9-17,4040-4032	x-x,4044-4041[BULt];18-21,4031-4028[UP3]	....(((((((((....((((((((&))))))))----)))))))))....	AAGCGGAGAGGCGUCGAGGUCGACU&AGUCGACU----CGCUUCUUUCAAA	4	0.999985278941187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN3772_c0_g1_4039_TPlot.pdf
TRINITY_DN3772_c0_g1:5449	si_a783	TRINITY_DN3772_c0_g1	5436	5458	5449	-24.70	-16.50	0.668016194331984	9.5	1-15,5458-5444;16-18,5441-5439	x-x,5443-5442[BULt];19-21,5438-5436[UP3]	...(((..(((((((((((((((&)))))))))))))))--)))...	AACUGGCCGGAAGUGGAGGAGUU&AACUCUUCUAUUUUU--CUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN3772_c0_g1_5449_TPlot.pdf
TRINITY_DN37733_c0_g1:1526	si_s69	TRINITY_DN37733_c0_g1	1515	1536	1526	-23.40	-15.60	0.666666666666667	8.5	2-5,1535-1532;6-13,1530-1523;15-21,1521-1515	1-1,1536-1536[UP5];x-x,1531-1531[BULt];14-14,1522-1522[SIL]	(((((((.((((((((.((((.&.))))-)))))))).)))))))	GAAAGGACAGAGGUAGUGAGUG&AACUU-CUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN37733_c0_g1_1526_TPlot.pdf
TRINITY_DN37766_c0_g1:110	si_a66	TRINITY_DN37766_c0_g1	103	119	110	-26.70	-17.50	0.655430711610487	8.5	1-10,119-110;15-21,109-103	11-14,x-x[BULq]	(((((((----((((((((((&))))))))))....)))))))	AGAAACA----GAAGGAGGCG&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN37766_c0_g1_110_TPlot.pdf
TRINITY_DN3776_c0_g1:656	si_a789	TRINITY_DN3776_c0_g1	639	665	656	-24.80	-16.50	0.665322580645161	17	1-11,665-655;12-18,648-642	x-x,654-649[BULt];19-21,641-639[UP3]	...(((((((......(((((((((((&)))))))))))------)))))))...	AGAGGAAAAUCAGAUUGGAAAAAUGGA&UCUAUUUUUCU------AUUUUCCAAU	4	0.999999999995042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN3776_c0_g1_656_TPlot.pdf
TRINITY_DN3776_c0_g1:800	si_s427	TRINITY_DN3776_c0_g1	789	809	800	-23.00	-16.60	0.721739130434783	8	1-16,809-794	17-21,793-789[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUUAGGUUAUUGUUGUGUAG&CUAUAUAACAAUAAUUACAUA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN3776_c0_g1_800_TPlot.pdf
TRINITY_DN3776_c0_g1:801	si_s426	TRINITY_DN3776_c0_g1	790	810	801	-23.60	-16.60	0.703389830508475	8	2-17,809-794	1-1,810-810[UP5];18-21,793-790[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUAGGUUAUUGUUGUGUAGU&UCUAUAUAACAAUAAUUACAU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN3776_c0_g1_801_TPlot.pdf
TRINITY_DN3777_c0_g1:1047	si_a814	TRINITY_DN3777_c0_g1	1037	1056	1047	-32.90	-22.00	0.668693009118541	6	3-13,1054-1044;17-21,1041-1037	1-2,1056-1055[UP5];14-16,1043-1042[AILq]	(((((..-(((((((((((..&..)))))))))))...)))))	UUUCCGC-CUUCUUCUUCGAC&AGCGAAGAAGAAGAAAGGAAA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN3777_c0_g1_1047_TPlot.pdf
TRINITY_DN3778_c0_g1:2473	si_s809	TRINITY_DN3778_c0_g1	2457	2482	2473	-28.50	-19.70	0.691228070175439	11	2-14,2481-2469;15-19,2463-2459	1-1,2482-2482[UP5];x-x,2468-2464[BULt];20-21,2458-2457[UP3]	..(((((.....(((((((((((((.&.)))))))))))))-----)))))..	GCUGAGAGUGACAGAGGUGAUGAAGG&UCUUCGUUACCUUU-----UCUUAAU	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN3778_c0_g1_2473_TPlot.pdf
TRINITY_DN3778_c0_g1:5923	si_a824	TRINITY_DN3778_c0_g1	5912	5933	5923	-23.60	-16.40	0.694915254237288	9	2-4,5932-5930;6-17,5927-5916	1-1,5933-5933[UP5];5-5,5929-5928[AILt];18-21,5915-5912[UP3]	....((((((((((((..(((.&.)))-.))))))))))))....	AAUGUUUUUCUUUCCUGCUCUG&AAGA-AAGGAAAGAAAAAAAAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN3778_c0_g1_5923_TPlot.pdf
TRINITY_DN3778_c0_g1:6082	si_a766	TRINITY_DN3778_c0_g1	6067	6091	6082	-30.50	-20.70	0.678688524590164	12	1-12,6091-6080;13-15,6077-6075;16-21,6072-6067	x-x,6079-6078[BULt];x-x,6074-6073[BULt]	((((((..(((..((((((((((((&))))))))))))--)))--))))))	AGUUGGUCGUCCUGGUCAGGAGCCC&GGGUUUUUGAUU--GAU--UCAACU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN3778_c0_g1_6082_TPlot.pdf
TRINITY_DN377_c0_g1:1060	si_a486	TRINITY_DN377_c0_g1	1048	1069	1060	-24.90	-16.40	0.65863453815261	5	1-13,1069-1057;14-19,1055-1050	x-x,1056-1056[BULt];20-21,1049-1048[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UUGACGAUAAUAUUUUAUAUAA&UUAUAUAGAAUAU-GUCGUUUU	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN377_c0_g1_1060_TPlot.pdf
TRINITY_DN377_c0_g1:1688	si_a763	TRINITY_DN377_c0_g1	1677	1698	1688	-28.80	-19.10	0.663194444444445	8	1-6,1698-1693;9-18,1689-1680;20-21,1678-1677	7-8,1692-1690[AILt];19-19,1679-1679[SIL]	((.((((((((((...((((((&))))))-..)))))))))).))	UGUAUCAAUCAAAUCUCCCAGA&UUUGGG-UUUUUGAUUGAUUCA	4	0.999999999379008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN377_c0_g1_1688_TPlot.pdf
TRINITY_DN37803_c0_g1:141	si_a406	TRINITY_DN37803_c0_g1	130	150	141	-19.80	-13.00	0.656565656565657	9	2-5,149-146;7-19,144-132	1-1,150-150[UP5];6-6,145-145[SIL];20-21,131-130[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	GAUGAGUAUAGAUAGUACAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN37803_c0_g1_141_TPlot.pdf
TRINITY_DN3780_c0_g1:861	si_s76	TRINITY_DN3780_c0_g1	850	870	861	-23.60	-16.30	0.690677966101695	11	5-10,866-861;13-21,858-850	1-4,870-867[UP5];11-12,860-859[SIL]	(((((((((..((((((....&....))))))..)))))))))	AAGAAAGGACUGAAAAACUGC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3780_c0_g1_861_TPlot.pdf
TRINITY_DN3781_c0_g1:362	si_a325	TRINITY_DN3781_c0_g1	351	370	362	-25.90	-18.20	0.702702702702703	6.5	1-6,370-365;9-19,363-353	7-8,364-364[AILq];20-21,352-351[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	CGGAGGAAUAAAAU-AUCAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN3781_c0_g1_362_TPlot.pdf
TRINITY_DN3781_c0_g1:363	si_a324	TRINITY_DN3781_c0_g1	352	371	363	-27.50	-18.60	0.676363636363636	6.5	2-7,370-365;10-20,363-353	1-1,371-371[UP5];8-9,364-364[AILq];21-21,352-352[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	GGAGGAAUAAAAU-AUCAUGA&CCAUGAUUUUUUUAUUCCUUG	2	0.993029117054739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN3781_c0_g1_363_TPlot.pdf
TRINITY_DN3781_c0_g1:364	si_a323	TRINITY_DN3781_c0_g1	353	372	364	-26.80	-18.50	0.690298507462687	7.5	3-8,370-365;11-21,363-353	1-2,372-371[UP5];9-10,364-364[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	GAGGAAUAAAAU-AUCAUGAU&UCCAUGAUUUUUUUAUUCCUU	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN3781_c0_g1_364_TPlot.pdf
TRINITY_DN3781_c0_g1:595	si_s512	TRINITY_DN3781_c0_g1	584	604	595	-24.80	-16.70	0.673387096774194	11	5-19,600-586	1-4,604-601[UP5];20-21,585-584[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAGGAUUAGGAAUAUGGUGGA&AAUUCUAUAUUCUUAAUUCGA	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN3781_c0_g1_595_TPlot.pdf
TRINITY_DN3784_c0_g1:656	si_a784	TRINITY_DN3784_c0_g1	645	665	656	-24.70	-18.90	0.765182186234818	9	2-15,664-651	1-1,665-665[UP5];16-21,650-645[UP3]	......((((((((((((((.&.))))))))))))))......	UUCGACGAAGAGUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3784_c0_g1_656_TPlot.pdf
TRINITY_DN3784_c0_g1:658	si_a782	TRINITY_DN3784_c0_g1	647	667	658	-26.40	-18.90	0.715909090909091	10.5	4-17,664-651	1-3,667-665[UP5];18-21,650-647[UP3]	....((((((((((((((...&...))))))))))))))....	CGACGAAGAGUAGAAGAGAAU&CAACUCUUCUAUUUUUCUAUU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN3784_c0_g1_658_TPlot.pdf
TRINITY_DN3784_c0_g1:659	si_a781	TRINITY_DN3784_c0_g1	648	668	659	-27.40	-18.90	0.68978102189781	11	5-18,664-651	1-4,668-665[UP5];19-21,650-648[UP3]	...((((((((((((((....&....))))))))))))))...	GACGAAGAGUAGAAGAGAAUG&UCAACUCUUCUAUUUUUCUAU	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN3784_c0_g1_659_TPlot.pdf
TRINITY_DN3784_c0_g1:667	si_s30	TRINITY_DN3784_c0_g1	655	676	667	-24.80	-16.30	0.657258064516129	12.5	1-10,676-667;13-17,663-659	11-12,666-664[AILt];18-21,658-655[UP3]	....(((((...((((((((((&))))))))))-..)))))....	AGUAGAAGAGAAUGGUUGCAGU&AUUGCAACUA-AAUCUUUAAUA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN3784_c0_g1_667_TPlot.pdf
TRINITY_DN37868_c0_g1:308	si_a410	TRINITY_DN37868_c0_g1	297	317	308	-17.80	-13.60	0.764044943820225	7.5	1-15,317-303	16-21,302-297[UP3]	......(((((((((((((((&)))))))))))))))......	GCGACCUAGAUAUAAACAAGA&UUUUGUUUAUAUUUAAAUAAA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN37868_c0_g1_308_TPlot.pdf
TRINITY_DN3786_c0_g1:3477	si_s74	TRINITY_DN3786_c0_g1	3466	3486	3477	-25.00	-16.30	0.652	9.5	1-9,3486-3478;11-17,3476-3470	10-10,3477-3477[SIL];18-21,3469-3466[UP3]	....(((((((.(((((((((&))))))))).)))))))....	UUCUGGGAAGAUGGGAAAUAG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3786_c0_g1_3477_TPlot.pdf
TRINITY_DN3786_c0_g1:4140	si_a79	TRINITY_DN3786_c0_g1	4129	4149	4140	-22.20	-16.30	0.734234234234234	6.5	1-13,4149-4137;15-20,4135-4130	14-14,4136-4136[SIL];21-21,4129-4129[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	GUUUUUGUUGAUGAAGAGCAG&UUGUUUUUCAUUAUUAAGAAA	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN3786_c0_g1_4140_TPlot.pdf
TRINITY_DN3786_c0_g1:4142	si_a77	TRINITY_DN3786_c0_g1	4131	4151	4142	-22.20	-17.50	0.788288288288288	5.5	1-15,4151-4137;17-21,4135-4131	16-16,4136-4136[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	UUUUGUUGAUGAAGAGCAGUU&AAUUGUUUUUCAUUAUUAAGA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3786_c0_g1_4142_TPlot.pdf
TRINITY_DN3786_c0_g1:4145	si_a74	TRINITY_DN3786_c0_g1	4134	4154	4145	-22.20	-15.20	0.684684684684685	11.5	4-18,4151-4137	1-3,4154-4152[UP5];19-21,4136-4134[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGUUGAUGAAGAGCAGUUCUG&UCAAAUUGUUUUUCAUUAUUA	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN3786_c0_g1_4145_TPlot.pdf
TRINITY_DN3786_c0_g1:4147	si_a72	TRINITY_DN3786_c0_g1	4136	4161	4147	-21.90	-16.10	0.735159817351598	15	1-5,4161-4157;6-20,4151-4137	x-x,4156-4152[BULt];21-21,4136-4136[UP3]	.(((((((((((((((.....(((((&)))))-----))))))))))))))).	UUGAUGAAGAGCAGUUCUGCAUGGAA&UUUCA-----AAUUGUUUUUCAUUAU	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN3786_c0_g1_4147_TPlot.pdf
TRINITY_DN3786_c0_g1:4218	si_a409	TRINITY_DN3786_c0_g1	4208	4227	4218	-19.50	-13.30	0.682051282051282	6	1-12,4227-4216;15-19,4214-4210	13-14,4215-4215[AILq];20-21,4209-4208[UP3]	..(((((.-((((((((((((&))))))))))))..)))))..	CGAUUUAU-UAUGAGCAAAAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999997767088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3786_c0_g1_4218_TPlot.pdf
TRINITY_DN37874_c0_g1:166	si_a22	TRINITY_DN37874_c0_g1	155	175	166	-23.50	-16.20	0.68936170212766	4	1-12,175-164;14-18,162-158	13-13,163-163[SIL];19-21,157-155[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AAAAGAACAAAAAAUAAAUAG&CUAUUUAUUUUUAGUUCUAAG	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN37874_c0_g1_166_TPlot.pdf
TRINITY_DN3787_c0_g1:2129	si_s44	TRINITY_DN3787_c0_g1	2118	2138	2129	-24.70	-17.80	0.720647773279352	10.5	5-20,2134-2119	1-4,2138-2135[UP5];21-21,2118-2118[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUUUGGAGUCCGAUUAUGAAC&UUUAAUAAUUGGAUUUCAAGU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN3787_c0_g1_2129_TPlot.pdf
TRINITY_DN3787_c0_g1:2221	si_a329	TRINITY_DN3787_c0_g1	2210	2229	2221	-29.60	-20.80	0.702702702702703	9	3-9,2227-2221;12-20,2219-2211	1-2,2229-2228[UP5];10-11,2220-2220[AILq];21-21,2210-2210[UP3]	.(((((((((.-(((((((..&..)))))))..))))))))).	AGGGACAAGGU-UGAAAAACU&AUUUUUUUAUUCCUUGUCCCG	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN3787_c0_g1_2221_TPlot.pdf
TRINITY_DN3787_c0_g1:2923	si_s727	TRINITY_DN3787_c0_g1	2904	2932	2923	-33.80	-22.90	0.677514792899408	18.5	1-10,2932-2923;11-19,2914-2906	x-x,2922-2915[BULt];20-21,2905-2904[UP3]	..(((((((((........((((((((((&))))))))))--------)))))))))..	CACAUCCGUCUUUCAACGAAGAUAAUAUC&GAUAUUAUCU--------AGACGGGUGAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s727_TRINITY_DN3787_c0_g1_2923_TPlot.pdf
TRINITY_DN3787_c0_g1:2926	si_s724	TRINITY_DN3787_c0_g1	2907	2935	2926	-31.70	-23.00	0.725552050473186	8.5	1-13,2935-2923;14-21,2914-2907	x-x,2922-2915[BULt]	((((((((........(((((((((((((&)))))))))))))--------))))))))	AUCCGUCUUUCAACGAAGAUAAUAUCUUU&AAAGAUAUUAUCU--------AGACGGGU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN3787_c0_g1_2926_TPlot.pdf
TRINITY_DN37882_c0_g1:20	si_a486	TRINITY_DN37882_c0_g1	9	29	20	-24.90	-16.80	0.674698795180723	15	8-20,22-10	1-7,29-23[UP5];21-21,9-9[UP3]	.(((((((((((((.......&.......))))))))))))).	UAGACGGCAUAUUCAAUGAAG&UUAUAUAGAAUAUGUCGUUUU	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN37882_c0_g1_20_TPlot.pdf
TRINITY_DN3789_c0_g1:210	si_a574	TRINITY_DN3789_c0_g1	200	219	210	-29.60	-20.00	0.675675675675676	8	3-15,217-205;18-21,203-200	1-2,219-218[UP5];16-17,204-204[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	CUUGC-ACAAGCAUGCGGUGA&GAAUCGUAUGUUUGUAACAAG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a574_TRINITY_DN3789_c0_g1_210_TPlot.pdf
TRINITY_DN37907_c0_g2:94	si_a450	TRINITY_DN37907_c0_g2	81	103	94	-25.20	-16.40	0.650793650793651	6	1-2,103-102;4-16,100-88;17-21,85-81	3-3,101-101[SIL];x-x,87-86[BULt]	(((((..(((((((((((((.((&)).)))))))))))))--)))))	AUGUAGCUGACAAUAAUUAUGUC&GAGAUAAUUGUUGUUA--UAUAU	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN37907_c0_g2_94_TPlot.pdf
TRINITY_DN37914_c0_g2:802	si_a66	TRINITY_DN37914_c0_g2	790	811	802	-26.70	-20.10	0.752808988764045	11.5	1-10,811-802;13-21,798-790	11-12,801-799[AILt]	(((((((((...((((((((((&))))))))))-..)))))))))	GAAGACGAUGAGGAGAGGGGUG&CGCUUCUUUC-AAAUUGUUUUU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN37914_c0_g2_802_TPlot.pdf
TRINITY_DN37914_c0_g2:803	si_a65	TRINITY_DN37914_c0_g2	791	812	803	-27.70	-19.20	0.693140794223827	10.5	1-11,812-802;14-21,798-791	12-13,801-799[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	AAGACGAUGAGGAGAGGGGUGG&UCGCUUCUUUC-AAAUUGUUUU	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN37914_c0_g2_803_TPlot.pdf
TRINITY_DN37914_c0_g2:804	si_a64	TRINITY_DN37914_c0_g2	792	813	804	-29.40	-21.00	0.714285714285714	10	1-12,813-802;15-21,798-792	13-14,801-799[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	AGACGAUGAGGAGAGGGGUGGG&CUCGCUUCUUUC-AAAUUGUUU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN37914_c0_g2_804_TPlot.pdf
TRINITY_DN37914_c0_g2:805	si_a63	TRINITY_DN37914_c0_g2	793	814	805	-30.20	-22.00	0.728476821192053	9	1-13,814-802;16-21,798-793	14-15,801-799[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	GACGAUGAGGAGAGGGGUGGGU&ACUCGCUUCUUUC-AAAUUGUU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN37914_c0_g2_805_TPlot.pdf
TRINITY_DN3791_c0_g1:1306	si_s476	TRINITY_DN3791_c0_g1	1296	1315	1306	-28.40	-18.80	0.661971830985915	6	1-12,1315-1304;14-20,1303-1297	13-13,x-x[BULq];21-21,1296-1296[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	CAAUGAGU-UGGGAUUUGUUG&CAACGGAUCCUAUAUUUAUUU	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN3791_c0_g1_1306_TPlot.pdf
TRINITY_DN3791_c0_g1:1616	si_a641	TRINITY_DN3791_c0_g1	1604	1625	1616	-23.60	-15.52	0.657627118644068	9.5	2-11,1624-1615;15-21,1610-1604	1-1,1625-1625[UP5];12-14,1614-1611[AILt]	(((((((....((((((((((.&.))))))))))-...)))))))	CGAUGUACUUUCUCAAGAAGAA&AUUUUUUUGAG-UAAUAUAUCG	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN3791_c0_g1_1616_TPlot.pdf
TRINITY_DN3791_c0_g1:1734	si_a70	TRINITY_DN3791_c0_g1	1723	1744	1734	-23.90	-15.70	0.656903765690377	10.5	1-8,1744-1737;11-18,1733-1726	9-10,1736-1734[AILt];19-21,1725-1723[UP3]	...((((((((...((((((((&))))))))-..))))))))...	GGAGAGGAGCAUCCUUGAAAGA&UCUUUCAA-AUUGUUUUUCAUU	3	0.999999999999151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3791_c0_g1_1734_TPlot.pdf
TRINITY_DN3791_c0_g1:1737	si_a68	TRINITY_DN3791_c0_g1	1725	1746	1737	-25.40	-19.10	0.751968503937008	8.5	1-10,1746-1737;13-20,1733-1726	11-12,1736-1734[AILt];21-21,1725-1725[UP3]	.((((((((...((((((((((&))))))))))-..)))))))).	AGAGGAGCAUCCUUGAAAGAAG&CUUCUUUCAA-AUUGUUUUUCA	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN3791_c0_g1_1737_TPlot.pdf
TRINITY_DN3791_c0_g1:1738	si_a67	TRINITY_DN3791_c0_g1	1726	1747	1738	-27.20	-20.70	0.761029411764706	7	1-11,1747-1737;14-21,1733-1726	12-13,1736-1734[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	GAGGAGCAUCCUUGAAAGAAGU&GCUUCUUUCAA-AUUGUUUUUC	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3791_c0_g1_1738_TPlot.pdf
TRINITY_DN3791_c0_g1:1739	si_a66	TRINITY_DN3791_c0_g1	1727	1748	1739	-26.70	-17.50	0.655430711610487	7.5	2-12,1747-1737;15-21,1733-1727	1-1,1748-1748[UP5];13-14,1736-1734[AILt]	(((((((...(((((((((((.&.)))))))))))-..)))))))	AGGAGCAUCCUUGAAAGAAGUA&CGCUUCUUUCAA-AUUGUUUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3791_c0_g1_1739_TPlot.pdf
TRINITY_DN3791_c0_g1:382	si_a469	TRINITY_DN3791_c0_g1	371	391	382	-21.10	-13.80	0.654028436018957	7	2-12,390-380;15-18,377-374	1-1,391-391[UP5];13-14,379-378[SIL];19-21,373-371[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	AUUGCGAGUAUUACAUAUUAC&AUAAUAUGUAAUUAUUGUUAU	4	0.999999752886627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN3791_c0_g1_382_TPlot.pdf
TRINITY_DN3791_c0_g1:665	si_s78	TRINITY_DN3791_c0_g1	648	674	665	-26.20	-17.10	0.652671755725191	10	1-10,674-665;11-15,661-657;16-21,653-648	x-x,664-662[BULt];x-x,656-654[BULt]	((((((...(((((...((((((((((&))))))))))---)))))---))))))	AGAAGAUUCAAGGAAAAAAGAAAAAGA&UUUUUUUCUU---UCCUU---UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3791_c0_g1_665_TPlot.pdf
TRINITY_DN3792_c0_g1:556	si_a752	TRINITY_DN3792_c0_g1	538	565	556	-34.80	-23.00	0.660919540229885	16.5	1-3,565-563;5-12,561-554;13-16,547-544;17-21,542-538	4-4,562-562[SIL];x-x,553-548[BULt];x-x,543-543[BULt]	(((((.((((......((((((((.(((&))).))))))))------))))-)))))	GAAGCGCCGAUUAUAAAGGAGGUUGAUG&CAUGAACCUCCU------UUGG-GUUUU	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN3792_c0_g1_556_TPlot.pdf
TRINITY_DN3792_c0_g1:557	si_a751	TRINITY_DN3792_c0_g1	539	566	557	-37.20	-24.40	0.655913978494624	10	1-4,566-563;6-13,561-554;14-17,547-544;18-21,542-539	5-5,562-562[SIL];x-x,553-548[BULt];x-x,543-543[BULt]	((((.((((......((((((((.((((&)))).))))))))------))))-))))	AAGCGCCGAUUAUAAAGGAGGUUGAUGG&CCAUGAACCUCCU------UUGG-GUUU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN3792_c0_g1_557_TPlot.pdf
TRINITY_DN3792_c0_g1:562	si_a746	TRINITY_DN3792_c0_g1	551	571	562	-41.30	-31.70	0.767554479418886	5.5	1-3,571-569;5-9,567-563;11-21,561-551	4-4,568-568[SIL];10-10,562-562[SIL]	(((((((((((.(((((.(((&))).))))).)))))))))))	UAAAGGAGGUUGAUGGUGAGG&CCUGGCCAUGAACCUCCUUUG	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN3792_c0_g1_562_TPlot.pdf
TRINITY_DN3792_c0_g1:563	si_a745	TRINITY_DN3792_c0_g1	552	572	563	-42.00	-31.30	0.745238095238095	6	2-4,571-569;6-10,567-563;12-21,561-552	1-1,572-572[UP5];5-5,568-568[SIL];11-11,562-562[SIL]	((((((((((.(((((.(((.&.))).))))).))))))))))	AAAGGAGGUUGAUGGUGAGGA&CCCUGGCCAUGAACCUCCUUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN3792_c0_g1_563_TPlot.pdf
TRINITY_DN3792_c0_g1:564	si_a744	TRINITY_DN3792_c0_g1	553	573	564	-44.40	-30.60	0.689189189189189	8	3-5,571-569;7-11,567-563;13-21,561-553	1-2,573-572[UP5];6-6,568-568[SIL];12-12,562-562[SIL]	(((((((((.(((((.(((..&..))).))))).)))))))))	AAGGAGGUUGAUGGUGAGGAA&CCCCUGGCCAUGAACCUCCUU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a744_TRINITY_DN3792_c0_g1_564_TPlot.pdf
TRINITY_DN3792_c0_g1:574	si_a502	TRINITY_DN3792_c0_g1	563	583	574	-32.10	-21.00	0.654205607476635	9.5	2-16,582-568	1-1,583-583[UP5];17-21,567-563[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUGGUGAGGAAGACGAGGAGG&GUUUUUCGUCUUCCUUGGAAU	2	0.999999999476266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3792_c0_g1_574_TPlot.pdf
TRINITY_DN3792_c0_g1:586	si_s804	TRINITY_DN3792_c0_g1	577	595	586	-27.90	-19.50	0.698924731182796	7.5	1-11,595-585;14-21,584-577	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	GAGGAGGU--UGAGGAUGAAG&UUUUAUCUUCGUUACCUUUUC	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3792_c0_g1_586_TPlot.pdf
TRINITY_DN3792_c0_g1:587	si_s899	TRINITY_DN3792_c0_g1	576	596	587	-28.30	-19.30	0.681978798586572	9	1-5,596-592;7-17,590-580	6-6,591-591[SIL];18-21,579-576[UP3]	....(((((((((((.(((((&))))).)))))))))))....	CGAGGAGGUUGAGGAUGAAGC&GCUUUCUCUUCAAUUUCAAUU	4	0.999998448438401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3792_c0_g1_587_TPlot.pdf
TRINITY_DN3792_c0_g1:590	si_s896	TRINITY_DN3792_c0_g1	579	599	590	-31.60	-23.20	0.734177215189873	9	3-8,597-592;10-20,590-580	1-2,599-598[UP5];9-9,591-591[SIL];21-21,579-579[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	GGAGGUUGAGGAUGAAGCCGC&UAGGCUUUCUCUUCAAUUUCA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3792_c0_g1_590_TPlot.pdf
TRINITY_DN3792_c0_g1:591	si_s895	TRINITY_DN3792_c0_g1	580	600	591	-31.10	-22.80	0.733118971061093	9.5	4-9,597-592;11-21,590-580	1-3,600-598[UP5];10-10,591-591[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAGGUUGAGGAUGAAGCCGCU&AUAGGCUUUCUCUUCAAUUUC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3792_c0_g1_591_TPlot.pdf
TRINITY_DN3792_c0_g1:592	si_s894	TRINITY_DN3792_c0_g1	581	601	592	-29.10	-19.60	0.673539518900344	11.5	5-10,597-592;12-21,590-581	1-4,601-598[UP5];11-11,591-591[SIL]	((((((((((.((((((....&....)))))).))))))))))	AGGUUGAGGAUGAAGCCGCUU&AAUAGGCUUUCUCUUCAAUUU	4	0.999999334405607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN3792_c0_g1_592_TPlot.pdf
TRINITY_DN3792_c0_g1:694	si_s751	TRINITY_DN3792_c0_g1	683	709	694	-29.40	-19.80	0.673469387755102	15	1-8,709-702;9-14,695-690;16-21,688-683	x-x,701-696[BULt];15-15,689-689[SIL]	((((((.((((((......((((((((&))))))))------)))))).))))))	CGUUGUGGUUUUGCUCGAAGGGUCAAU&AUUGACCU------UAAAACAACAACG	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s751_TRINITY_DN3792_c0_g1_694_TPlot.pdf
TRINITY_DN3793_c0_g1:1988	si_a279	TRINITY_DN3793_c0_g1	1976	1997	1988	-32.50	-22.20	0.683076923076923	7	1-6,1997-1992;8-10,1990-1988;11-19,1986-1978	7-7,1991-1991[SIL];x-x,1987-1987[BULt];20-21,1977-1976[UP3]	..(((((((((.(((.((((((&)))))).)))-)))))))))..	UUUCCAAGUGAUUCUAUUCGUG&UACGAAAAGA-UCGCUUGGAUU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN3793_c0_g1_1988_TPlot.pdf
TRINITY_DN3793_c0_g1:1989	si_a278	TRINITY_DN3793_c0_g1	1977	1998	1989	-34.20	-22.40	0.654970760233918	7.5	2-7,1997-1992;9-11,1990-1988;12-20,1986-1978	1-1,1998-1998[UP5];8-8,1991-1991[SIL];x-x,1987-1987[BULt];21-21,1977-1977[UP3]	.(((((((((.(((.((((((.&.)))))).)))-))))))))).	UUCCAAGUGAUUCUAUUCGUGU&CUACGAAAAGA-UCGCUUGGAU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a278_TRINITY_DN3793_c0_g1_1989_TPlot.pdf
TRINITY_DN3793_c0_g1:4706	si_a183	TRINITY_DN3793_c0_g1	4695	4714	4706	-30.10	-21.12	0.701661129568106	9.5	1-3,4714-4712;8-21,4708-4695	4-7,4711-4709[AILq]	((((((((((((((...-(((&)))....))))))))))))))	AACAGGGAAAGGUACAG-CUG&UAGAUAAUAUCUUUCCCUGUU	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN3793_c0_g1_4706_TPlot.pdf
TRINITY_DN3793_c0_g1:4707	si_a182	TRINITY_DN3793_c0_g1	4696	4715	4707	-31.80	-23.32	0.733333333333333	10	1-4,4715-4712;9-21,4708-4696	5-8,4711-4709[AILq]	(((((((((((((...-((((&))))....)))))))))))))	ACAGGGAAAGGUACAG-CUGG&CUAGAUAAUAUCUUUCCCUGU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN3793_c0_g1_4707_TPlot.pdf
TRINITY_DN3793_c0_g1:4852	si_s80	TRINITY_DN3793_c0_g1	4842	4861	4852	-28.20	-18.70	0.663120567375887	4.5	2-14,4860-4848;16-20,4847-4843	1-1,4861-4861[UP5];15-15,x-x[BULq];21-21,4842-4842[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	UGAGAA-AAAGGAAAGAAGAU&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3793_c0_g1_4852_TPlot.pdf
TRINITY_DN3793_c0_g1:4856	si_s76	TRINITY_DN3793_c0_g1	4843	4865	4856	-23.60	-16.00	0.677966101694915	12.5	6-17,4860-4849;18-21,4846-4843	1-5,4865-4861[UP5];x-x,4848-4847[BULt]	((((..((((((((((((.....&.....))))))))))))--))))	GAGAAAAAGGAAAGAAGAUCAUC&AUUUUUUUUCUUUCCUU--UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3793_c0_g1_4856_TPlot.pdf
TRINITY_DN3793_c0_g1:4861	si_s71	TRINITY_DN3793_c0_g1	4850	4871	4861	-25.70	-18.38	0.715175097276265	15	1-5,4871-4867;11-21,4860-4850	6-10,4866-4861[AILt]	(((((((((((......(((((&)))))-.....)))))))))))	AGGAAAGAAGAUCAUCGGGAGG&CUUCU-AUUUUUUUUCUUUCCU	4	0.999999999999845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3793_c0_g1_4861_TPlot.pdf
TRINITY_DN3793_c0_g1:4978	si_s626	TRINITY_DN3793_c0_g1	4968	4987	4978	-36.10	-24.60	0.681440443213296	6.5	1-13,4987-4975;17-17,4972-4972;19-21,4970-4968	14-16,4974-4973[AILq];18-18,4971-4971[SIL]	(((.(..-(((((((((((((&)))))))))))))...).)))	GCGGCGA-GAGAGGAUCGCUU&AAGCGAUCUUUUCGUAGGCGU	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3793_c0_g1_4978_TPlot.pdf
TRINITY_DN3793_c0_g1:759	si_s198	TRINITY_DN3793_c0_g1	747	768	759	-30.80	-23.10	0.75	5.5	1-10,768-759;11-16,757-752;18-21,750-747	x-x,758-758[BULt];17-17,751-751[SIL]	((((.((((((.((((((((((&))))))))))-)))))).))))	CAGCAGGUGCAUUUCCAAGAUG&UAUUUUGGAA-UGUACCAGUUG	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN3793_c0_g1_759_TPlot.pdf
TRINITY_DN3793_c0_g1:764	si_s193	TRINITY_DN3793_c0_g1	752	775	764	-30.40	-22.40	0.736842105263158	9.5	2-5,774-771;6-15,768-759;16-21,757-752	1-1,775-775[UP5];x-x,770-769[BULt];x-x,758-758[BULt]	((((((.((((((((((..((((.&.))))--))))))))))-))))))	GGUGCAUUUCCAAGAUGAGGUCGA&ACGAU--UAUUUUGGAA-UGUACC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN3793_c0_g1_764_TPlot.pdf
TRINITY_DN3793_c0_g1:918	si_s91	TRINITY_DN3793_c0_g1	903	927	918	-34.70	-24.30	0.70028818443804	10.5	2-10,926-918;11-16,916-911;17-21,907-903	1-1,927-927[UP5];x-x,917-917[BULt];x-x,910-908[BULt]	(((((...((((((.(((((((((.&.)))))))))-))))))---)))))	UCCGAGCAGGCGAGCGAGGAAGGGC&UUUCUUCUUC-UUCGCU---UCGGA	4	0.999998279742994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3793_c0_g1_918_TPlot.pdf
TRINITY_DN3795_c0_g1:328	si_a405	TRINITY_DN3795_c0_g1	317	337	328	-19.80	-13.60	0.686868686868687	9.5	1-14,337-324	15-21,323-317[UP3]	.......((((((((((((((&)))))))))))))).......	AAGAAACUGAGCGAAACAAUU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3795_c0_g1_328_TPlot.pdf
TRINITY_DN3796_c0_g1:649	si_s215	TRINITY_DN3796_c0_g1	638	666	649	-37.40	-25.30	0.676470588235294	20	1-6,666-661;7-20,652-639	x-x,660-653[BULt];21-21,638-638[UP3]	.((((((((((((((........((((((&))))))--------)))))))))))))).	ACGCGUGGUUUUGAAGCAGACGCCACAGC&GUUGUG--------UUCGAAACCGCGUGA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN3796_c0_g1_649_TPlot.pdf
TRINITY_DN3797_c0_g1:1690	si_a351	TRINITY_DN3797_c0_g1	1679	1699	1690	-20.50	-14.80	0.721951219512195	12	7-20,1693-1680	1-6,1699-1694[UP5];21-21,1679-1679[UP3]	.((((((((((((((......&......)))))))))))))).	UUCAAAAUAGAAUUAUUCACA&AAAUAUUAAUUCUAUUUUGAU	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN3797_c0_g1_1690_TPlot.pdf
TRINITY_DN37983_c0_g1:380	si_s500	TRINITY_DN37983_c0_g1	369	389	380	-22.80	-15.60	0.684210526315789	5.5	2-6,388-384;8-21,382-369	1-1,389-389[UP5];7-7,383-383[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UGUGGGAUUGUUUUUUUUGUC&UAUAAACAAAACAAUUCUAUA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN37983_c0_g1_380_TPlot.pdf
TRINITY_DN3799_c0_g1:3568	si_s396	TRINITY_DN3799_c0_g1	3556	3579	3568	-32.90	-21.50	0.653495440729483	10	2-8,3578-3572;9-14,3569-3564;15-18,3562-3559	1-1,3579-3579[UP5];x-x,3571-3570[BULt];x-x,3563-3563[BULt];19-21,3558-3556[UP3]	...((((.((((((..(((((((.&.)))))))--))))))-))))...	AGCUCGUGCUUCCUGGUGGGAUGC&ACAUUCCA--AGGAAG-ACGAAAA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s396_TRINITY_DN3799_c0_g1_3568_TPlot.pdf
TRINITY_DN37_c1_g1:2793	si_a464	TRINITY_DN37_c1_g1	2781	2802	2793	-19.60	-13.40	0.683673469387755	5	1-9,2802-2794;11-13,2792-2790;14-21,2788-2781	10-10,2793-2793[SIL];x-x,2789-2789[BULt]	((((((((.(((.(((((((((&))))))))).)))-))))))))	AAUAAUUACCAUUUUGUGUAUA&UAUAUAUAAUAUG-UAAUUAUU	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN37_c1_g1_2793_TPlot.pdf
TRINITY_DN37_c1_g1:2820	si_a182	TRINITY_DN37_c1_g1	2809	2829	2820	-31.80	-20.74	0.652201257861635	12.5	1-6,2829-2824;12-21,2818-2809	7-11,2823-2819[SIL]	((((((((((.....((((((&)))))).....))))))))))	AUAGGGGGAGUGUAGGUCUAG&CUAGAUAAUAUCUUUCCCUGU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN37_c1_g1_2820_TPlot.pdf
TRINITY_DN37_c1_g1:570	si_s88	TRINITY_DN37_c1_g1	559	579	570	-34.80	-22.66	0.651149425287356	10	1-5,579-575;10-21,570-559	6-9,574-571[SIL]	((((((((((((....(((((&)))))....))))))))))))	GAAGUGAGGGAGUUCCAAGGA&UCCUUUCUUCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN37_c1_g1_570_TPlot.pdf
TRINITY_DN37_c1_g1:7360	si_a477	TRINITY_DN37_c1_g1	7349	7369	7360	-21.50	-14.90	0.693023255813954	6.5	1-19,7369-7351	20-21,7350-7349[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AUUUUUAUGUAAUGAUGAUUG&UAAUUAUUGUUAUAUAGAAUA	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN37_c1_g1_7360_TPlot.pdf
TRINITY_DN3800_c0_g1:1368	si_s729	TRINITY_DN3800_c0_g1	1357	1377	1368	-32.10	-21.20	0.660436137071651	8.5	3-17,1375-1361	1-2,1377-1376[UP5];18-21,1360-1357[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAACCACUCGUUUAGAUAAGU&UAUUAUCUAGACGGGUGAAUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN3800_c0_g1_1368_TPlot.pdf
TRINITY_DN3800_c0_g1:3017	si_s884	TRINITY_DN3800_c0_g1	3006	3026	3017	-26.30	-19.10	0.726235741444867	3.5	2-12,3025-3015;15-21,3012-3006	1-1,3026-3026[UP5];13-14,3014-3013[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	GAAAGCUAUUUUAUUUUUAGA&ACUAAAAAUAAAUAGGCUUUC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s884_TRINITY_DN3800_c0_g1_3017_TPlot.pdf
TRINITY_DN3802_c0_g1:788	si_a404	TRINITY_DN3802_c0_g1	777	797	788	-21.70	-14.50	0.668202764976959	7	1-14,797-784;16-18,782-780	15-15,783-783[SIL];19-21,779-777[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	AUUAUAAGAGCAAGACAAUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3802_c0_g1_788_TPlot.pdf
TRINITY_DN3802_c0_g1:794	si_a398	TRINITY_DN3802_c0_g1	783	806	794	-22.40	-15.10	0.674107142857143	11.5	3-7,804-800;8-20,796-784	1-2,806-805[UP5];x-x,799-797[BULt];21-21,783-783[UP3]	.(((((((((((((...(((((..&..)))))---))))))))))))).	AGAGCAAGACAAUUUAACUAUACU&AAUAUAG---AAUUGUUUUGUUUA	2	0.999952007841137	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3802_c0_g1_794_TPlot.pdf
TRINITY_DN3803_c0_g1:1087	si_a153	TRINITY_DN3803_c0_g1	1076	1096	1087	-28.70	-19.70	0.686411149825784	9	1-5,1096-1092;8-15,1089-1082;17-19,1080-1078	6-7,1091-1090[SIL];16-16,1081-1081[SIL];20-21,1077-1076[UP3]	..(((.((((((((..(((((&)))))..)))))))).)))..	UAGGAGUGGCCUUAUCGCAAC&GUUGUUUUAAGGUCAAUCUAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN3803_c0_g1_1087_TPlot.pdf
TRINITY_DN3803_c0_g1:1089	si_a151	TRINITY_DN3803_c0_g1	1078	1098	1089	-28.90	-19.40	0.671280276816609	10	3-7,1096-1092;10-17,1089-1082;19-21,1080-1078	1-2,1098-1097[UP5];8-9,1091-1090[SIL];18-18,1081-1081[SIL]	(((.((((((((..(((((..&..)))))..)))))))).)))	GGAGUGGCCUUAUCGCAACUC&UUGUUGUUUUAAGGUCAAUCU	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN3803_c0_g1_1089_TPlot.pdf
TRINITY_DN3803_c0_g1:1448	si_a548	TRINITY_DN3803_c0_g1	1436	1460	1448	-27.20	-18.10	0.665441176470588	9.5	2-6,1459-1455;7-15,1451-1443;16-21,1441-1436	1-1,1460-1460[UP5];x-x,1454-1452[BULt];x-x,1442-1442[BULt]	((((((.(((((((((...(((((.&.)))))---)))))))))-))))))	GAGAUGCAAGAAGUAGUUUAUUGAC&UUCAAU---CUAUUUCUU-UAUCUC	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN3803_c0_g1_1448_TPlot.pdf
TRINITY_DN3803_c0_g1:851	si_a791	TRINITY_DN3803_c0_g1	840	860	851	-26.50	-17.60	0.664150943396226	8	1-5,860-856;6-9,854-851;11-21,850-840	x-x,855-855[BULt];10-10,x-x[BULq]	(((((((((((-((((.(((((&)))))-)))).)))))))))))	GGAUUGGGGGA-AGAACGAGUA&UAUUU-UUCUAUUUUCCAAUCC	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN3803_c0_g1_851_TPlot.pdf
TRINITY_DN3805_c0_g1:417	si_s72	TRINITY_DN3805_c0_g1	406	426	417	-24.10	-16.10	0.66804979253112	8.5	2-4,425-423;7-7,420-420;9-21,418-406	1-1,426-426[UP5];5-6,422-421[SIL];8-8,419-419[SIL]	(((((((((((((.(..(((.&.)))..).)))))))))))))	AAGGAGAGAAAAAUAUGAGGU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3805_c0_g1_417_TPlot.pdf
TRINITY_DN3806_c0_g1:1087	si_s209	TRINITY_DN3806_c0_g1	1076	1096	1087	-36.20	-25.90	0.715469613259668	5	2-6,1095-1091;8-20,1089-1077	1-1,1096-1096[UP5];7-7,1090-1090[SIL];21-21,1076-1076[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	CGUUUUGGACACAAGUGGUAG&GUACCAGUUGUGUUCGAAACC	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN3806_c0_g1_1087_TPlot.pdf
TRINITY_DN3806_c0_g1:1089	si_s207	TRINITY_DN3806_c0_g1	1078	1099	1089	-33.00	-24.30	0.736363636363636	6	1-4,1099-1096;5-8,1094-1091;10-21,1089-1078	x-x,1095-1095[BULt];9-9,1090-1090[SIL]	((((((((((((.((((.((((&))))-)))).))))))))))))	UUUUGGACACAAGUGGUAGCAU&AUGU-ACCAGUUGUGUUCGAAA	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN3806_c0_g1_1089_TPlot.pdf
TRINITY_DN3806_c0_g1:1540	si_a148	TRINITY_DN3806_c0_g1	1530	1549	1540	-30.30	-19.80	0.653465346534653	6	1-9,1549-1541;11-13,1539-1537;16-20,1535-1531	10-10,1540-1540[SIL];14-15,1536-1536[AILq];21-21,1530-1530[UP3]	.(((((.-(((.(((((((((&))))))))).)))..))))).	GUGACCA-AGAUCAACAACGA&UCGUUGUUGUUUUAAGGUCAA	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN3806_c0_g1_1540_TPlot.pdf
TRINITY_DN3806_c0_g1:659	si_a67	TRINITY_DN3806_c0_g1	648	668	659	-27.20	-17.90	0.658088235294118	5.5	2-9,667-660;11-12,658-657;15-21,654-648	1-1,668-668[UP5];10-10,659-659[SIL];13-14,656-655[SIL]	(((((((..((.((((((((.&.)))))))).))..)))))))	GAAGAACUUUUGGAAAGAAGA&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999999851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3806_c0_g1_659_TPlot.pdf
TRINITY_DN3806_c0_g1:662	si_s78	TRINITY_DN3806_c0_g1	647	671	662	-26.20	-17.78	0.678625954198473	8	2-13,670-659;15-20,653-648	1-1,671-671[UP5];14-14,658-654[AILt];21-21,647-647[UP3]	.((((((.....((((((((((((.&.))))))))))))----.)))))).	CGAAGAACUUUUGGAAAGAAGAAAC&UUUUUUUCUUUCC----UUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3806_c0_g1_662_TPlot.pdf
TRINITY_DN3806_c0_g1:663	si_s77	TRINITY_DN3806_c0_g1	648	672	663	-25.50	-17.48	0.685490196078431	9	3-14,670-659;16-21,653-648	1-2,672-671[UP5];15-15,658-654[AILt]	((((((.....((((((((((((..&..))))))))))))----.))))))	GAAGAACUUUUGGAAAGAAGAAACA&UUUUUUUUCUUUCC----UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3806_c0_g1_663_TPlot.pdf
TRINITY_DN3806_c0_g1:921	si_a324	TRINITY_DN3806_c0_g1	911	930	921	-27.50	-18.40	0.669090909090909	9.5	1-2,930-929;4-11,927-920;14-21,918-911	3-3,928-928[SIL];12-13,919-919[AILq]	((((((((.-((((((((.((&)).))))))))..))))))))	CAAGGAGUU-GGGAGUCAAGG&CCAUGAUUUUUUUAUUCCUUG	4	0.999949203849064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN3806_c0_g1_921_TPlot.pdf
TRINITY_DN3806_c0_g2:1127	si_s8	TRINITY_DN3806_c0_g2	1116	1135	1127	-21.30	-14.50	0.68075117370892	10	1-9,1135-1127;11-18,1126-1119	10-10,x-x[BULq];19-21,1118-1116[UP3]	...((((((((-(((((((((&))))))))).))))))))...	CCAGUGGUAGU-AUGAGUGGU&AUUACUUAUUAUUACUAUAUU	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN3806_c0_g2_1127_TPlot.pdf
TRINITY_DN3806_c0_g2:2553	si_a758	TRINITY_DN3806_c0_g2	2542	2563	2553	-34.00	-22.80	0.670588235294118	8	1-8,2563-2556;9-17,2554-2546	x-x,2555-2555[BULt];18-21,2545-2542[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	GUCCCAAAAAUCCGGAAGGAGG&CCUCCUUU-GGGUUUUUGAUUG	2	0.999576262700615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN3806_c0_g2_2553_TPlot.pdf
TRINITY_DN3806_c0_g2:2556	si_a756	TRINITY_DN3806_c0_g2	2544	2565	2556	-33.10	-23.40	0.706948640483384	8.5	3-10,2563-2556;11-19,2554-2546	1-2,2565-2564[UP5];x-x,2555-2555[BULt];20-21,2545-2544[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	CCCAAAAAUCCGGAAGGAGGCG&AACCUCCUUU-GGGUUUUUGAU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3806_c0_g2_2556_TPlot.pdf
TRINITY_DN3806_c0_g2:2558	si_a754	TRINITY_DN3806_c0_g2	2546	2567	2558	-34.60	-22.60	0.653179190751445	10.5	5-12,2563-2556;13-21,2554-2546	1-4,2567-2564[UP5];x-x,2555-2555[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	CAAAAAUCCGGAAGGAGGCGAA&UGAACCUCCUUU-GGGUUUUUG	4	0.99999486274582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN3806_c0_g2_2558_TPlot.pdf
TRINITY_DN3806_c0_g2:2566	si_s803	TRINITY_DN3806_c0_g2	2555	2575	2566	-26.00	-17.80	0.684615384615385	11	5-14,2571-2562;16-21,2560-2555	1-4,2575-2572[UP5];15-15,2561-2561[SIL]	((((((.((((((((((....&....)))))))))).))))))	GGAAGGAGGCGAAGGUAUCUG&AUUUUAUCUUCGUUACCUUUU	2	0.999986682428738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3806_c0_g2_2566_TPlot.pdf
TRINITY_DN3806_c0_g2:2567	si_s802	TRINITY_DN3806_c0_g2	2556	2576	2567	-26.40	-17.40	0.659090909090909	12.5	6-15,2571-2562;17-21,2560-2556	1-5,2576-2572[UP5];16-16,2561-2561[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GAAGGAGGCGAAGGUAUCUGC&UAUUUUAUCUUCGUUACCUUU	3	0.999999999964079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3806_c0_g2_2567_TPlot.pdf
TRINITY_DN3806_c0_g2:444	si_a487	TRINITY_DN3806_c0_g2	433	453	444	-24.80	-16.90	0.681451612903226	11.5	4-8,450-446;11-21,443-433	1-3,453-451[UP5];9-10,445-444[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	AGAAACGACGUUCUCUGUCGU&UAUAUAGAAUAUGUCGUUUUU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN3806_c0_g2_444_TPlot.pdf
TRINITY_DN3806_c0_g2:501	si_s896	TRINITY_DN3806_c0_g2	490	511	501	-31.60	-23.50	0.743670886075949	7.5	3-8,509-504;9-20,502-491	1-2,511-510[UP5];x-x,503-503[BULt];21-21,490-490[UP3]	.((((((((((((.((((((..&..))))))-)))))))))))).	GGAAAUUGGAGAGAAAAGCUAC&UAGGCUUU-CUCUUCAAUUUCA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN3806_c0_g2_501_TPlot.pdf
TRINITY_DN3806_c0_g2:502	si_s895	TRINITY_DN3806_c0_g2	491	512	502	-31.10	-23.10	0.742765273311897	8.5	4-9,509-504;10-21,502-491	1-3,512-510[UP5];x-x,503-503[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	GAAAUUGGAGAGAAAAGCUACA&AUAGGCUUU-CUCUUCAAUUUC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN3806_c0_g2_502_TPlot.pdf
TRINITY_DN3806_c0_g2:504	si_s894	TRINITY_DN3806_c0_g2	492	513	504	-29.10	-19.90	0.683848797250859	10.5	5-10,509-504;11-21,502-492	1-4,513-510[UP5];x-x,503-503[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	AAAUUGGAGAGAAAAGCUACAA&AAUAGGCUUU-CUCUUCAAUUU	3	0.999989647362308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN3806_c0_g2_504_TPlot.pdf
TRINITY_DN3806_c0_g2:692	si_s77	TRINITY_DN3806_c0_g2	677	701	692	-25.50	-17.18	0.673725490196078	8	3-14,699-688;16-21,682-677	1-2,701-700[UP5];15-15,687-683[AILt]	((((((.....((((((((((((..&..))))))))))))----.))))))	GAAGAACUUUUGGAAAGAAAAAAUG&UUUUUUUUCUUUCC----UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3806_c0_g2_692_TPlot.pdf
TRINITY_DN3806_c0_g2:961	si_s68	TRINITY_DN3806_c0_g2	950	971	961	-23.10	-16.40	0.70995670995671	9	4-8,968-964;9-21,962-950	1-3,971-969[UP5];x-x,963-963[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GAAGGAAAAGAAUCAGAAGGUU&CAACUUCU-AUUUUUUUUCUUU	4	0.99999999855241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3806_c0_g2_961_TPlot.pdf
TRINITY_DN38094_c0_g1:110	si_a20	TRINITY_DN38094_c0_g1	99	117	110	-26.70	-20.60	0.771535580524345	7.5	1-4,117-114;7-20,113-100	5-6,x-x[BULq];21-21,99-99[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	GAGAACUAGAAAUGA--GGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN38094_c0_g1_110_TPlot.pdf
TRINITY_DN3809_c0_g1:1323	si_s559	TRINITY_DN3809_c0_g1	1312	1332	1323	-27.80	-20.20	0.726618705035971	9	2-5,1331-1328;7-18,1326-1315	1-1,1332-1332[UP5];6-6,1327-1327[SIL];19-21,1314-1312[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	AAAGUCCCGAAAGUGAUGAUA&AAUUAAUAUUUUCGGGACAAG	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN3809_c0_g1_1323_TPlot.pdf
TRINITY_DN3809_c0_g1:1324	si_s558	TRINITY_DN3809_c0_g1	1313	1333	1324	-28.20	-20.20	0.716312056737589	10	3-6,1331-1328;8-19,1326-1315	1-2,1333-1332[UP5];7-7,1327-1327[SIL];20-21,1314-1313[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	AAGUCCCGAAAGUGAUGAUAG&GAAUUAAUAUUUUCGGGACAA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN3809_c0_g1_1324_TPlot.pdf
TRINITY_DN3809_c0_g1:1586	si_s92	TRINITY_DN3809_c0_g1	1574	1596	1586	-34.90	-23.70	0.679083094555874	6.5	1-8,1596-1589;9-13,1587-1583;14-19,1581-1576	x-x,1588-1588[BULt];x-x,1582-1582[BULt];20-21,1575-1574[UP3]	..((((((.(((((.((((((((&))))))))-)))))-))))))..	AACCGAAGAUGAAGCAAGAGGAA&UUCUUCUU-CUUCG-CUUCGGAU	3	0.999999998653902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3809_c0_g1_1586_TPlot.pdf
TRINITY_DN3809_c0_g1:1637	si_a110	TRINITY_DN3809_c0_g1	1626	1646	1637	-27.80	-18.60	0.669064748201439	10.5	5-8,1642-1639;10-21,1637-1626	1-4,1646-1643[UP5];9-9,1638-1638[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAGGCAAGCUCGAAUUUAAAC&GAUAAAAUACGAGCUUGUUUU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN3809_c0_g1_1637_TPlot.pdf
TRINITY_DN3809_c0_g1:1671	si_s87	TRINITY_DN3809_c0_g1	1660	1680	1671	-32.90	-22.90	0.696048632218845	4.5	2-7,1679-1674;9-17,1672-1664;19-21,1662-1660	1-1,1680-1680[UP5];8-8,1673-1673[SIL];18-18,1663-1663[SIL]	(((.(((((((((.((((((.&.)))))).))))))))).)))	AAGGGAGGAAGAACAAAGGAC&UUCCUUUCUUCUUCUUCGCUU	3	0.999999999997467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3809_c0_g1_1671_TPlot.pdf
TRINITY_DN380_c0_g1:1053	si_a632	TRINITY_DN380_c0_g1	1042	1062	1053	-26.10	-17.70	0.67816091954023	12	6-14,1057-1049;16-21,1047-1042	1-5,1062-1058[UP5];15-15,1048-1048[SIL]	((((((.(((((((((.....&.....))))))))).))))))	GCUCAACAGGAUCGACCUCGC&AUUAUGUCGAUUUUUUUGAGU	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN380_c0_g1_1053_TPlot.pdf
TRINITY_DN380_c0_g1:2924	si_a636	TRINITY_DN380_c0_g1	2913	2933	2924	-26.30	-18.20	0.692015209125475	10.5	2-10,2932-2924;12-17,2922-2917	1-1,2933-2933[UP5];11-11,2923-2923[SIL];18-21,2916-2913[UP3]	....((((((.(((((((((.&.))))))))).))))))....	UCACGCUCAGCAAGAUCGGCG&UGUCGAUUUUUUUGAGUAAUA	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN380_c0_g1_2924_TPlot.pdf
TRINITY_DN380_c0_g1:2927	si_a633	TRINITY_DN380_c0_g1	2916	2936	2927	-26.40	-18.20	0.689393939393939	12	5-13,2932-2924;15-20,2922-2917	1-4,2936-2933[UP5];14-14,2923-2923[SIL];21-21,2916-2916[UP3]	.((((((.(((((((((....&....))))))))).)))))).	CGCUCAGCAAGAUCGGCGAGG&UUAUGUCGAUUUUUUUGAGUA	4	0.999991568831731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN380_c0_g1_2927_TPlot.pdf
TRINITY_DN380_c0_g1:4343	si_s184	TRINITY_DN380_c0_g1	4332	4353	4343	-33.40	-22.70	0.679640718562874	10.5	1-2,4353-4352;3-14,4350-4339	x-x,4351-4351[BULt];15-21,4338-4332[UP3]	.......((((((((((((.((&))-)))))))))))).......	CAUGCUCGUCGUUGCUCGGCGC&GC-CCGAGUAACGAUUAUUUUG	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN380_c0_g1_4343_TPlot.pdf
TRINITY_DN380_c0_g1:4346	si_s181	TRINITY_DN380_c0_g1	4335	4356	4346	-34.60	-22.70	0.65606936416185	12.5	4-5,4353-4352;6-17,4350-4339	1-3,4356-4354[UP5];x-x,4351-4351[BULt];18-21,4338-4335[UP3]	....((((((((((((.((...&...))-))))))))))))....	GCUCGUCGUUGCUCGGCGCCAC&GAUGC-CCGAGUAACGAUUAUU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN380_c0_g1_4346_TPlot.pdf
TRINITY_DN3811_c0_g1:2623	si_a764	TRINITY_DN3811_c0_g1	2613	2632	2623	-28.90	-19.60	0.678200692041523	8.5	1-9,2632-2624;11-13,2622-2620;15-19,2619-2615	10-10,2623-2623[SIL];14-14,x-x[BULq];20-21,2614-2613[UP3]	..(((((-(((.(((((((((&))))))))).))).)))))..	GGGAGUC-AUCCGAAGCCCGA&UUGGGUUUUUGAUUGAUUCAA	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN3811_c0_g1_2623_TPlot.pdf
TRINITY_DN3811_c0_g1:2624	si_a763	TRINITY_DN3811_c0_g1	2614	2633	2624	-28.80	-20.30	0.704861111111111	7.5	1-10,2633-2624;12-14,2622-2620;16-20,2619-2615	11-11,2623-2623[SIL];15-15,x-x[BULq];21-21,2614-2614[UP3]	.(((((-(((.((((((((((&)))))))))).))).))))).	GGAGUC-AUCCGAAGCCCGAA&UUUGGGUUUUUGAUUGAUUCA	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3811_c0_g1_2624_TPlot.pdf
TRINITY_DN3811_c0_g1:2625	si_a762	TRINITY_DN3811_c0_g1	2615	2634	2625	-29.70	-20.00	0.673400673400673	7.5	2-11,2633-2624;13-15,2622-2620;17-21,2619-2615	1-1,2634-2634[UP5];12-12,2623-2623[SIL];16-16,x-x[BULq]	(((((-(((.((((((((((.&.)))))))))).))).)))))	GAGUC-AUCCGAAGCCCGAAC&CUUUGGGUUUUUGAUUGAUUC	3	0.99999863267643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN3811_c0_g1_2625_TPlot.pdf
TRINITY_DN3811_c0_g1:3015	si_s162	TRINITY_DN3811_c0_g1	3003	3024	3015	-40.10	-27.90	0.695760598503741	7	1-13,3024-3012;15-16,3010-3009;19-20,3005-3004	14-14,3011-3011[SIL];17-18,3008-3006[AILt];21-21,3003-3003[UP3]	.((...((.(((((((((((((&))))))))))))).))-..)).	CCUGGCGCGUCUGGCCAUGGAC&GUUCAUGGCCAGGGGU-AAAGA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN3811_c0_g1_3015_TPlot.pdf
TRINITY_DN3811_c0_g1:3016	si_s161	TRINITY_DN3811_c0_g1	3005	3025	3016	-41.50	-27.70	0.667469879518072	8	2-14,3024-3012;16-17,3010-3009	1-1,3025-3025[UP5];15-15,3011-3011[SIL];18-21,3008-3005[UP3]	....((.(((((((((((((.&.))))))))))))).))....	UGGCGCGUCUGGCCAUGGACG&GGUUCAUGGCCAGGGGUAAAG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN3811_c0_g1_3016_TPlot.pdf
TRINITY_DN3811_c0_g1:3125	si_a244	TRINITY_DN3811_c0_g1	3114	3134	3125	-35.20	-23.30	0.661931818181818	9	1-5,3134-3130;7-14,3128-3121	6-6,3129-3129[SIL];15-21,3120-3114[UP3]	.......((((((((.(((((&))))).)))))))).......	UUAAUUGCGGGGGAUGGAAUU&AAUUCGAUCCCCCGAUUGUAU	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a244_TRINITY_DN3811_c0_g1_3125_TPlot.pdf
TRINITY_DN3811_c0_g1:3128	si_a241	TRINITY_DN3811_c0_g1	3117	3138	3128	-36.70	-25.10	0.683923705722071	8	1-3,3138-3136;4-8,3134-3130;10-17,3128-3121	x-x,3135-3135[BULt];9-9,3129-3129[SIL];18-21,3120-3117[UP3]	....((((((((.(((((.(((&)))-))))).))))))))....	AUUGCGGGGGAUGGAAUUAGAU&AUC-AAUUCGAUCCCCCGAUUG	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a241_TRINITY_DN3811_c0_g1_3128_TPlot.pdf
TRINITY_DN3811_c0_g1:3129	si_a240	TRINITY_DN3811_c0_g1	3118	3139	3129	-35.00	-25.40	0.725714285714286	8	2-4,3138-3136;5-9,3134-3130;11-18,3128-3121	1-1,3139-3139[UP5];x-x,3135-3135[BULt];10-10,3129-3129[SIL];19-21,3120-3118[UP3]	...((((((((.(((((.(((.&.)))-))))).))))))))...	UUGCGGGGGAUGGAAUUAGAUG&AAUC-AAUUCGAUCCCCCGAUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a240_TRINITY_DN3811_c0_g1_3129_TPlot.pdf
TRINITY_DN3811_c0_g1:3130	si_a239	TRINITY_DN3811_c0_g1	3119	3140	3130	-35.40	-25.40	0.717514124293785	9	3-5,3138-3136;6-10,3134-3130;12-19,3128-3121	1-2,3140-3139[UP5];x-x,3135-3135[BULt];11-11,3129-3129[SIL];20-21,3120-3119[UP3]	..((((((((.(((((.(((..&..)))-))))).))))))))..	UGCGGGGGAUGGAAUUAGAUGC&UAAUC-AAUUCGAUCCCCCGAU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a239_TRINITY_DN3811_c0_g1_3130_TPlot.pdf
TRINITY_DN3811_c0_g1:3131	si_a238	TRINITY_DN3811_c0_g1	3120	3141	3131	-35.40	-25.40	0.717514124293785	10	4-6,3138-3136;7-11,3134-3130;13-20,3128-3121	1-3,3141-3139[UP5];x-x,3135-3135[BULt];12-12,3129-3129[SIL];21-21,3120-3120[UP3]	.((((((((.(((((.(((...&...)))-))))).)))))))).	GCGGGGGAUGGAAUUAGAUGCG&AUAAUC-AAUUCGAUCCCCCGA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a238_TRINITY_DN3811_c0_g1_3131_TPlot.pdf
TRINITY_DN3811_c0_g1:3132	si_a237	TRINITY_DN3811_c0_g1	3121	3142	3132	-34.80	-25.20	0.724137931034483	10	5-7,3138-3136;8-12,3134-3130;14-21,3128-3121	1-4,3142-3139[UP5];x-x,3135-3135[BULt];13-13,3129-3129[SIL]	((((((((.(((((.(((....&....)))-))))).))))))))	CGGGGGAUGGAAUUAGAUGCGC&UAUAAUC-AAUUCGAUCCCCCG	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a237_TRINITY_DN3811_c0_g1_3132_TPlot.pdf
TRINITY_DN3811_c0_g1:4373	si_s213	TRINITY_DN3811_c0_g1	4363	4383	4373	-37.10	-26.00	0.700808625336927	10.5	1-7,4383-4377;10-14,4373-4369;16-21,4368-4363	8-9,4376-4374[AILt];15-15,x-x[BULq]	((((((-(((((...(((((((&)))))))-..))))).))))))	GCGCGG-UUCGGUCGGCAGCUG&CAGUUGU-GUUCGAAACCGCGU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s213_TRINITY_DN3811_c0_g1_4373_TPlot.pdf
TRINITY_DN3811_c0_g1:4374	si_s212	TRINITY_DN3811_c0_g1	4364	4384	4374	-38.70	-27.70	0.715762273901809	10	1-8,4384-4377;11-15,4373-4369;17-21,4368-4364	9-10,4376-4374[AILt];16-16,x-x[BULq]	(((((-(((((...((((((((&))))))))-..))))).)))))	CGCGG-UUCGGUCGGCAGCUGG&CCAGUUGU-GUUCGAAACCGCG	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN3811_c0_g1_4374_TPlot.pdf
TRINITY_DN3811_c0_g1:4433	si_s92	TRINITY_DN3811_c0_g1	4421	4442	4433	-34.90	-26.90	0.770773638968481	4.5	1-12,4442-4431;13-17,4429-4425;19-21,4423-4421	x-x,4430-4430[BULt];18-18,4424-4424[SIL]	(((.(((((.((((((((((((&))))))))))))-))))).)))	GUCGGGGGCGGAAGAAGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3811_c0_g1_4433_TPlot.pdf
TRINITY_DN3811_c0_g1:4437	si_s88	TRINITY_DN3811_c0_g1	4425	4446	4437	-34.80	-22.70	0.652298850574713	9	5-16,4442-4431;17-21,4429-4425	1-4,4446-4443[UP5];x-x,4430-4430[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GGGGCGGAAGAAGAAGAACUAC&UCCUUUCUUCUUCUUC-GCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3811_c0_g1_4437_TPlot.pdf
TRINITY_DN38150_c0_g1:81	si_s70	TRINITY_DN38150_c0_g1	70	91	81	-25.80	-17.32	0.671317829457364	14.5	1-6,91-86;10-21,81-70	7-9,85-82[AILt]	((((((((((((....((((((&))))))-...))))))))))))	GGGGAGAGAGGAUACAGGGGGU&ACUUCU-AUUUUUUUUCUUUCC	2	0.999999999999602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN38150_c0_g1_81_TPlot.pdf
TRINITY_DN3815_c0_g1:3339	si_a326	TRINITY_DN3815_c0_g1	3326	3348	3339	-26.20	-17.40	0.66412213740458	5	1-13,3348-3336;14-18,3334-3330;19-21,3328-3326	x-x,3335-3335[BULt];x-x,3329-3329[BULt]	(((.(((((.(((((((((((((&)))))))))))))-)))))-)))	GGCUAAGGACGUAAAGAAAUUAU&AUGAUUUUUUUAU-UCCUU-GUC	4	0.999999999744379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN3815_c0_g1_3339_TPlot.pdf
TRINITY_DN3815_c0_g1:3537	si_s804	TRINITY_DN3815_c0_g1	3527	3546	3537	-27.90	-18.50	0.663082437275986	4	1-14,3546-3533;17-21,3531-3527	15-16,3532-3532[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	GAGAAC-UGACGAAGAUAGAA&UUUUAUCUUCGUUACCUUUUC	4	0.999999999993243	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN3815_c0_g1_3537_TPlot.pdf
TRINITY_DN3815_c0_g1:3659	si_s76	TRINITY_DN3815_c0_g1	3647	3668	3659	-23.60	-17.10	0.724576271186441	9	4-14,3665-3655;15-20,3653-3648	1-3,3668-3666[UP5];x-x,3654-3654[BULt];21-21,3647-3647[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	CAGAAAGAGAAAGAAAGAGCAC&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3815_c0_g1_3659_TPlot.pdf
TRINITY_DN3815_c0_g1:3823	si_a784	TRINITY_DN3815_c0_g1	3812	3833	3823	-24.70	-16.50	0.668016194331984	8.5	1-3,3833-3831;4-15,3829-3818	x-x,3830-3830[BULt];16-21,3817-3812[UP3]	......((((((((((((.(((&)))-))))))))))))......	UAACUCGAGAAAUAGAAGAAGU&ACU-CUUCUAUUUUUCUAUUUU	2	0.999999999984143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3815_c0_g1_3823_TPlot.pdf
TRINITY_DN3815_c0_g1:3828	si_a779	TRINITY_DN3815_c0_g1	3817	3837	3828	-27.00	-18.60	0.688888888888889	7.5	2-5,3836-3833;8-20,3830-3818	1-1,3837-3837[UP5];6-7,3832-3831[SIL];21-21,3817-3817[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	CGAGAAAUAGAAGAAGUGGAC&AUUCAACUCUUCUAUUUUUCU	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN3815_c0_g1_3828_TPlot.pdf
TRINITY_DN3815_c0_g1:4753	si_s77	TRINITY_DN3815_c0_g1	4742	4762	4753	-25.50	-17.50	0.686274509803922	10	1-4,4762-4759;6-10,4757-4753;12-21,4751-4742	5-5,4758-4758[SIL];11-11,4752-4752[SIL]	((((((((((.(((((.((((&)))).))))).))))))))))	GAGGAGGGGGCGGAAACGGAG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3815_c0_g1_4753_TPlot.pdf
TRINITY_DN3816_c0_g1:111	si_a547	TRINITY_DN3816_c0_g1	97	120	111	-26.90	-18.12	0.67360594795539	6.5	1-13,120-108;16-21,102-97	14-15,107-103[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	GGAUAAUCUGUAAAUAGAUUGAGC&GUUCAAUCUAUUU---CUUUAUCU	4	0.999835249032249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN3816_c0_g1_111_TPlot.pdf
TRINITY_DN3816_c0_g1:112	si_a546	TRINITY_DN3816_c0_g1	98	121	112	-28.60	-20.32	0.71048951048951	6	1-14,121-108;17-21,102-98	15-16,107-103[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN3816_c0_g1_112_TPlot.pdf
TRINITY_DN3818_c0_g1:1037	si_s52	TRINITY_DN3818_c0_g1	1026	1050	1037	-31.30	-20.56	0.656869009584664	14.5	2-8,1049-1043;11-21,1036-1026	1-1,1050-1050[UP5];9-10,1042-1037[AILt]	(((((((((((......(((((((.&.)))))))----..)))))))))))	AGUUGCUAGCUCAUCUCAAGUCCAU&UUGGAUUU----CAAGUUAGCAACU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN3818_c0_g1_1037_TPlot.pdf
TRINITY_DN3818_c0_g1:2601	si_a764	TRINITY_DN3818_c0_g1	2590	2610	2601	-28.90	-19.70	0.681660899653979	8.5	3-16,2608-2595;18-19,2593-2592	1-2,2610-2609[UP5];17-17,2594-2594[SIL];20-21,2591-2590[UP3]	..((.((((((((((((((..&..)))))))))))))).))..	GGGACUCGAUCAAAAGCCUUG&UUGGGUUUUUGAUUGAUUCAA	4	0.99998263567328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN3818_c0_g1_2601_TPlot.pdf
TRINITY_DN3818_c0_g1:3100	si_s40	TRINITY_DN3818_c0_g1	3089	3109	3100	-24.30	-16.00	0.65843621399177	10	3-16,3107-3094	1-2,3109-3108[UP5];17-21,3093-3089[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAAAGCCAAUUAUUAGGGAGU&AAUCUUUAAUAAUUGGAUUUC	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN3818_c0_g1_3100_TPlot.pdf
TRINITY_DN3818_c0_g1:3103	si_s37	TRINITY_DN3818_c0_g1	3092	3113	3103	-24.40	-16.30	0.668032786885246	7	2-5,3112-3109;6-19,3107-3094	1-1,3113-3113[UP5];x-x,3108-3108[BULt];20-21,3093-3092[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	AGCCAAUUAUUAGGGAGUUUAC&CUAAA-UCUUUAAUAAUUGGAU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN3818_c0_g1_3103_TPlot.pdf
TRINITY_DN3818_c0_g1:3105	si_s35	TRINITY_DN3818_c0_g1	3094	3115	3105	-24.00	-16.10	0.670833333333333	9	4-7,3112-3109;8-21,3107-3094	1-3,3115-3113[UP5];x-x,3108-3108[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	CCAAUUAUUAGGGAGUUUACCC&AACUAAA-UCUUUAAUAAUUGG	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN3818_c0_g1_3105_TPlot.pdf
TRINITY_DN381_c0_g1:1713	si_s16	TRINITY_DN381_c0_g1	1701	1722	1713	-25.60	-16.70	0.65234375	8	1-9,1722-1714;11-12,1712-1711;13-21,1709-1701	10-10,1713-1713[SIL];x-x,1710-1710[BULt]	(((((((((.((.(((((((((&))))))))).))-)))))))))	UUGCAGUUACAUUUGGUGAUGA&UUAUUACUAUAU-UGAUUGCAA	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN381_c0_g1_1713_TPlot.pdf
TRINITY_DN381_c0_g1:2019	si_a401	TRINITY_DN381_c0_g1	2008	2029	2019	-22.60	-16.90	0.747787610619469	7	2-7,2028-2023;8-21,2021-2008	1-1,2029-2029[UP5];x-x,2022-2022[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	AUAUAAACAAGAUACGUUCUGG&AUAGAAU-UGUUUUGUUUAUAU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN381_c0_g1_2019_TPlot.pdf
TRINITY_DN381_c3_g1:1182	si_a555	TRINITY_DN381_c3_g1	1167	1191	1182	-33.70	-24.40	0.724035608308605	8.5	1-7,1191-1185;10-13,1182-1179;14-21,1174-1167	8-9,1184-1183[SIL];x-x,1178-1175[BULt]	((((((((....((((..(((((((&)))))))..))))----))))))))	UCACGGGGUACGGGAUUUAGAAAUA&UAUUUCUUUAUCU----CCCCGUGA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN381_c3_g1_1182_TPlot.pdf
TRINITY_DN381_c4_g1:3874	si_s73	TRINITY_DN381_c4_g1	3864	3883	3874	-24.00	-15.70	0.654166666666667	8	1-3,3883-3881;5-15,3879-3869;17-21,3868-3864	4-4,3880-3880[SIL];16-16,x-x[BULq]	(((((-(((((((((((.(((&))).))))))))))).)))))	AGAGG-AGGAGGAAAAGAGGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN381_c4_g1_3874_TPlot.pdf
TRINITY_DN381_c4_g1:3875	si_s84	TRINITY_DN381_c4_g1	3864	3887	3875	-32.30	-21.90	0.678018575851393	13	3-9,3885-3879;10-20,3875-3865	1-2,3887-3886[UP5];x-x,3878-3876[BULt];21-21,3864-3864[UP3]	.(((((((((((...(((((((..&..)))))))---))))))))))).	AGAGGAGGAGGAAAAGAGGAAACA&UCUUUCCUU---UCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN381_c4_g1_3875_TPlot.pdf
TRINITY_DN381_c4_g1:3878	si_s77	TRINITY_DN381_c4_g1	3865	3887	3878	-25.50	-17.20	0.674509803921569	9	3-12,3885-3876;13-16,3874-3871;17-21,3869-3865	1-2,3887-3886[UP5];x-x,3875-3875[BULt];x-x,3870-3870[BULt]	(((((.((((.((((((((((..&..))))))))))-))))-)))))	GAGGAGGAGGAAAAGAGGAAACA&UUUUUUUUCUUU-CCUU-UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN381_c4_g1_3878_TPlot.pdf
TRINITY_DN381_c4_g1:3879	si_s83	TRINITY_DN381_c4_g1	3865	3888	3879	-30.90	-21.50	0.6957928802589	13.5	4-10,3885-3879;11-21,3875-3865	1-3,3888-3886[UP5];x-x,3878-3876[BULt]	(((((((((((...(((((((...&...)))))))---)))))))))))	GAGGAGGAGGAAAAGAGGAAACAG&UUCUUUCCUU---UCUUCUUCUUC	2	0.999999999896146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN381_c4_g1_3879_TPlot.pdf
TRINITY_DN381_c4_g1:3965	si_s77	TRINITY_DN381_c4_g1	3954	3974	3965	-25.50	-18.70	0.733333333333333	5.5	2-10,3973-3965;12-20,3963-3955	1-1,3974-3974[UP5];11-11,3964-3964[SIL];21-21,3954-3954[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AAAGAAGGGACAGAAAAAAGC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN381_c4_g1_3965_TPlot.pdf
TRINITY_DN381_c4_g1:3966	si_s76	TRINITY_DN381_c4_g1	3955	3975	3966	-23.60	-18.70	0.792372881355932	6.5	3-11,3973-3965;13-21,3963-3955	1-2,3975-3974[UP5];12-12,3964-3964[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAGAAGGGACAGAAAAAAGCC&AUUUUUUUUCUUUCCUUUCUU	2	0.999989487053654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN381_c4_g1_3966_TPlot.pdf
TRINITY_DN381_c4_g1:5846	si_a503	TRINITY_DN381_c4_g1	5834	5855	5846	-32.10	-22.10	0.688473520249221	11.5	1-12,5855-5844;13-18,5842-5837	x-x,5843-5843[BULt];19-21,5836-5834[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	GUAUCCAGGAGGAGGCGGGGGA&UUUUUCGUCUUC-CUUGGAAUG	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN381_c4_g1_5846_TPlot.pdf
TRINITY_DN381_c4_g1:6450	si_s80	TRINITY_DN381_c4_g1	6440	6459	6450	-28.20	-18.60	0.659574468085106	6.5	2-10,6458-6450;12-20,6449-6441	1-1,6459-6459[UP5];11-11,x-x[BULq];21-21,6440-6440[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	UGAGAAGAAA-GAAGGAGAAC&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN381_c4_g1_6450_TPlot.pdf
TRINITY_DN381_c4_g1:6451	si_s79	TRINITY_DN381_c4_g1	6441	6460	6451	-26.20	-18.60	0.709923664122137	7.5	3-11,6458-6450;13-21,6449-6441	1-2,6460-6459[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GAGAAGAAA-GAAGGAGAACU&UUUUUUCUUUCCUUUCUUCUU	2	0.999999999999957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN381_c4_g1_6451_TPlot.pdf
TRINITY_DN381_c4_g1:6452	si_s78	TRINITY_DN381_c4_g1	6442	6461	6452	-26.20	-17.50	0.66793893129771	8	4-12,6458-6450;14-21,6449-6442	1-3,6461-6459[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	AGAAGAAA-GAAGGAGAACUG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN381_c4_g1_6452_TPlot.pdf
TRINITY_DN381_c4_g1:6651	si_a784	TRINITY_DN381_c4_g1	6640	6660	6651	-24.70	-17.80	0.720647773279352	7.5	2-10,6659-6651;12-18,6649-6643	1-1,6660-6660[UP5];11-11,6650-6650[SIL];19-21,6642-6640[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	AUUAUAGGAAUAUGGAAGAGC&ACUCUUCUAUUUUUCUAUUUU	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN381_c4_g1_6651_TPlot.pdf
TRINITY_DN381_c4_g1:7910	si_a468	TRINITY_DN381_c4_g1	7899	7919	7910	-21.30	-14.50	0.68075117370892	8.5	5-21,7915-7899	1-4,7919-7916[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAAUAAUAAUUAUAUAUACAA&UAUAAUAUGUAAUUAUUGUUA	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN381_c4_g1_7910_TPlot.pdf
TRINITY_DN381_c4_g2:3063	si_s77	TRINITY_DN381_c4_g2	3051	3072	3063	-25.50	-17.60	0.690196078431373	7	1-12,3072-3061;14-21,3058-3051	13-13,3060-3059[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	GAAGGAAGCCGAAGAAAAGAGG&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN381_c4_g2_3063_TPlot.pdf
TRINITY_DN381_c4_g2:3081	si_a785	TRINITY_DN381_c4_g2	3069	3090	3081	-25.90	-18.20	0.702702702702703	6.5	1-8,3090-3083;10-16,3081-3075;18-21,3072-3069	9-9,3082-3082[SIL];17-17,3074-3073[AILt]	((((..(((((((.((((((((&)))))))).)))))))-.))))	GAGGCUUAGGGAAUUAGAAGAG&CUCUUCUAUUUUUCUA-UUUUC	3	0.999999997320845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN381_c4_g2_3081_TPlot.pdf
TRINITY_DN381_c4_g2:3082	si_a784	TRINITY_DN381_c4_g2	3071	3091	3082	-24.70	-17.00	0.688259109311741	8	2-9,3090-3083;11-17,3081-3075	1-1,3091-3091[UP5];10-10,3082-3082[SIL];18-21,3074-3071[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	GGCUUAGGGAAUUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999992661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN381_c4_g2_3082_TPlot.pdf
TRINITY_DN381_c4_g2:3088	si_a786	TRINITY_DN381_c4_g2	3077	3099	3088	-26.60	-17.30	0.650375939849624	9.5	1-6,3099-3094;8-15,3090-3083;17-21,3081-3077	7-7,3093-3091[AILt];16-16,3082-3082[SIL]	(((((.((((((((...((((((&))))))--.)))))))).)))))	GGGAAUUAGAAGAGAAAAGAAGA&UCUUCU--AUUUUUCUAUUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN381_c4_g2_3088_TPlot.pdf
TRINITY_DN38204_c0_g1:134	si_s76	TRINITY_DN38204_c0_g1	120	143	134	-23.60	-15.70	0.665254237288135	8.5	1-11,143-133;12-15,129-126;17-21,124-120	x-x,132-130[BULt];16-16,125-125[SIL]	(((((.((((...(((((((((((&)))))))))))---)))).)))))	AAGAGUGGAAUACAGAAAGAAAAU&AUUUUUUUUCU---UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN38204_c0_g1_134_TPlot.pdf
TRINITY_DN38204_c0_g1:135	si_s75	TRINITY_DN38204_c0_g1	121	144	135	-24.00	-15.60	0.65	9	1-12,144-133;13-16,129-126;18-21,124-121	x-x,132-130[BULt];17-17,125-125[SIL]	((((.((((...((((((((((((&))))))))))))---)))).))))	AGAGUGGAAUACAGAAAGAAAAUG&UAUUUUUUUUCU---UUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN38204_c0_g1_135_TPlot.pdf
TRINITY_DN38204_c0_g1:136	si_s74	TRINITY_DN38204_c0_g1	122	145	136	-25.00	-17.00	0.68	6.5	1-13,145-133;14-17,129-126;19-21,124-122	x-x,132-130[BULt];18-18,125-125[SIL]	(((.((((...(((((((((((((&)))))))))))))---)))).)))	GAGUGGAAUACAGAAAGAAAAUGG&CUAUUUUUUUUCU---UUCCUUUC	2	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN38204_c0_g1_136_TPlot.pdf
TRINITY_DN38204_c0_g1:145	si_s809	TRINITY_DN38204_c0_g1	133	154	145	-28.50	-18.60	0.652631578947368	8	1-3,154-152;5-11,150-144;12-18,142-136	4-4,151-151[SIL];x-x,143-143[BULt];19-21,135-133[UP3]	...(((((((.(((((((.(((&))).)))))))-)))))))...	AGAAAGAAAAUGGUGACGUAGA&UCUUCGUUACC-UUUUCUUAAU	3	0.999999999998377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN38204_c0_g1_145_TPlot.pdf
TRINITY_DN38204_c0_g1:146	si_s808	TRINITY_DN38204_c0_g1	134	155	146	-28.60	-19.90	0.695804195804196	7	1-4,155-152;6-12,150-144;13-19,142-136	5-5,151-151[SIL];x-x,143-143[BULt];20-21,135-134[UP3]	..(((((((.(((((((.((((&)))).)))))))-)))))))..	GAAAGAAAAUGGUGACGUAGAU&AUCUUCGUUACC-UUUUCUUAA	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN38204_c0_g1_146_TPlot.pdf
TRINITY_DN38204_c0_g1:147	si_s807	TRINITY_DN38204_c0_g1	135	156	147	-28.90	-21.20	0.73356401384083	5	1-5,156-152;7-13,150-144;14-20,142-136	6-6,151-151[SIL];x-x,143-143[BULt];21-21,135-135[UP3]	.(((((((.(((((((.(((((&))))).)))))))-))))))).	AAAGAAAAUGGUGACGUAGAUA&UAUCUUCGUUACC-UUUUCUUA	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN38204_c0_g1_147_TPlot.pdf
TRINITY_DN38204_c0_g1:148	si_s806	TRINITY_DN38204_c0_g1	136	157	148	-28.60	-21.80	0.762237762237762	4	1-6,157-152;8-14,150-144;15-21,142-136	7-7,151-151[SIL];x-x,143-143[BULt]	(((((((.(((((((.((((((&)))))).)))))))-)))))))	AAGAAAAUGGUGACGUAGAUAA&UUAUCUUCGUUACC-UUUUCUU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN38204_c0_g1_148_TPlot.pdf
TRINITY_DN38204_c0_g1:149	si_s805	TRINITY_DN38204_c0_g1	137	158	149	-28.60	-21.30	0.744755244755245	4.5	1-7,158-152;9-15,150-144;16-21,142-137	8-8,151-151[SIL];x-x,143-143[BULt]	((((((.(((((((.(((((((&))))))).)))))))-))))))	AGAAAAUGGUGACGUAGAUAAG&UUUAUCUUCGUUACC-UUUUCU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN38204_c0_g1_149_TPlot.pdf
TRINITY_DN38204_c0_g1:150	si_s804	TRINITY_DN38204_c0_g1	138	159	150	-27.90	-20.40	0.731182795698925	5.5	2-8,158-152;10-16,150-144;17-21,142-138	1-1,159-159[UP5];9-9,151-151[SIL];x-x,143-143[BULt]	(((((.(((((((.(((((((.&.))))))).)))))))-)))))	GAAAAUGGUGACGUAGAUAAGG&UUUUAUCUUCGUUACC-UUUUC	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN38204_c0_g1_150_TPlot.pdf
TRINITY_DN38204_c0_g1:151	si_s803	TRINITY_DN38204_c0_g1	139	160	151	-26.00	-17.20	0.661538461538462	7.5	3-9,158-152;11-17,150-144;18-21,142-139	1-2,160-159[UP5];10-10,151-151[SIL];x-x,143-143[BULt]	((((.(((((((.(((((((..&..))))))).)))))))-))))	AAAAUGGUGACGUAGAUAAGGA&AUUUUAUCUUCGUUACC-UUUU	3	0.999999999999975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN38204_c0_g1_151_TPlot.pdf
TRINITY_DN38204_c0_g1:152	si_s802	TRINITY_DN38204_c0_g1	141	161	152	-26.40	-17.20	0.651515151515151	11.5	4-10,158-152;12-18,150-144	1-3,161-159[UP5];11-11,151-151[SIL];19-21,143-141[UP3]	...(((((((.(((((((...&...))))))).)))))))...	AAUGGUGACGUAGAUAAGGAC&UAUUUUAUCUUCGUUACCUUU	3	0.999999999999645	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN38204_c0_g1_152_TPlot.pdf
TRINITY_DN38204_c0_g1:154	si_s800	TRINITY_DN38204_c0_g1	143	162	154	-29.70	-20.40	0.686868686868687	6.5	1-3,162-160;5-12,159-152;14-20,150-144	4-4,x-x[BULq];13-13,151-151[SIL];21-21,143-143[UP3]	.(((((((.((((((((-(((&))).)))))))).))))))).	UGGUGACGUAGAUAAGG-ACG&CGUAUUUUAUCUUCGUUACCU	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN38204_c0_g1_154_TPlot.pdf
TRINITY_DN38204_c0_g1:155	si_s799	TRINITY_DN38204_c0_g1	144	163	155	-30.00	-21.60	0.72	5.5	1-4,163-160;6-13,159-152;15-21,150-144	5-5,x-x[BULq];14-14,151-151[SIL]	(((((((.((((((((-((((&)))).)))))))).)))))))	GGUGACGUAGAUAAGG-ACGA&UCGUAUUUUAUCUUCGUUACC	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN38204_c0_g1_155_TPlot.pdf
TRINITY_DN3823_c0_g1:3478	si_s593	TRINITY_DN3823_c0_g1	3467	3490	3478	-33.00	-27.50	0.833333333333333	10	3-8,3488-3483;9-21,3479-3467	1-2,3490-3489[UP5];x-x,3482-3480[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	GAUUCGCUUGGAUCAAUUGUCCUG&AUGGAUAA---AUCCAAGCGAAUC	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s593_TRINITY_DN3823_c0_g1_3478_TPlot.pdf
TRINITY_DN3823_c0_g1:5833	si_a527	TRINITY_DN3823_c0_g1	5823	5842	5833	-47.30	-30.90	0.653276955602537	7	2-10,5841-5833;13-17,5830-5826;19-21,5825-5823	1-1,5842-5842[UP5];11-12,5832-5831[SIL];18-18,x-x[BULq]	(((-(((((..(((((((((.&.)))))))))..))))).)))	CCG-UCGCUGCCGUGUCUGCG&GGCGGACACGCGAGCGAUCGG	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a527_TRINITY_DN3823_c0_g1_5833_TPlot.pdf
TRINITY_DN38241_c0_g1:110	si_a634	TRINITY_DN38241_c0_g1	99	119	110	-26.40	-17.20	0.651515151515151	10	4-17,116-103	1-3,119-117[UP5];18-21,102-99[UP3]	....((((((((((((((...&...))))))))))))))....	AUAAUCAAAAAAAUCGGCUAG&UAUGUCGAUUUUUUUGAGUAA	4	0.999999999999538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN38241_c0_g1_110_TPlot.pdf
TRINITY_DN38252_c0_g1:6432	si_s90	TRINITY_DN38252_c0_g1	6421	6441	6432	-35.30	-26.20	0.742209631728045	3.5	1-10,6441-6432;12-21,6430-6421	11-11,6431-6431[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	UUGGAGCGAAAAAGAAGAAAG&CUUUCUUCUUCUUCGCUUCGG	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN38252_c0_g1_6432_TPlot.pdf
TRINITY_DN38252_c0_g1:6433	si_s89	TRINITY_DN38252_c0_g1	6422	6442	6433	-35.30	-28.90	0.818696883852691	3	1-11,6442-6432;13-21,6430-6422	12-12,6431-6431[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	UGGAGCGAAAAAGAAGAAAGG&CCUUUCUUCUUCUUCGCUUCG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN38252_c0_g1_6433_TPlot.pdf
TRINITY_DN38252_c0_g1:6434	si_s88	TRINITY_DN38252_c0_g1	6423	6443	6434	-34.80	-28.40	0.816091954022989	2	1-12,6443-6432;14-21,6430-6423	13-13,6431-6431[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAGCGAAAAAGAAGAAAGGG&UCCUUUCUUCUUCUUCGCUUC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN38252_c0_g1_6434_TPlot.pdf
TRINITY_DN38252_c0_g1:6436	si_s86	TRINITY_DN38252_c0_g1	6425	6445	6436	-32.90	-25.50	0.775075987841945	4	2-14,6444-6432;16-21,6430-6425	1-1,6445-6445[UP5];15-15,6431-6431[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AGCGAAAAAGAAGAAAGGGGU&UUUCCUUUCUUCUUCUUCGCU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN38252_c0_g1_6436_TPlot.pdf
TRINITY_DN3825_c0_g1:1145	si_a327	TRINITY_DN3825_c0_g1	1134	1156	1145	-28.40	-18.70	0.658450704225352	9.5	1-9,1156-1148;10-20,1145-1135	x-x,1147-1146[BULt];21-21,1134-1134[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	UGACGAGGAAUACAAAAGGGUUA&UGAUUUUUU--UAUUCCUUGUCC	3	0.999999997721425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN3825_c0_g1_1145_TPlot.pdf
TRINITY_DN3825_c0_g1:1578	si_s198	TRINITY_DN3825_c0_g1	1567	1591	1578	-30.80	-20.10	0.652597402597403	13	1-6,1591-1586;7-18,1581-1570;20-21,1568-1567	x-x,1585-1582[BULt];19-19,1569-1569[SIL]	((.((((((((((((....((((((&))))))----)))))))))))).))	CAUCUGGUGCAUUCUUUGAAGAGUG&UAUUUU----GGAAUGUACCAGUUG	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN3825_c0_g1_1578_TPlot.pdf
TRINITY_DN3825_c0_g1:1781	si_a412	TRINITY_DN3825_c0_g1	1770	1790	1781	-18.30	-12.30	0.672131147540984	8	2-6,1789-1785;9-21,1782-1770	1-1,1790-1790[UP5];7-8,1784-1783[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	UAUUUAUUUGAGUUGAAAUAU&UUGUUUAUAUUUAAAUAAAUA	4	0.999995269886044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN3825_c0_g1_1781_TPlot.pdf
TRINITY_DN3825_c0_g1:330	si_s828	TRINITY_DN3825_c0_g1	319	339	330	-21.90	-14.30	0.65296803652968	6.5	1-5,339-335;7-14,333-326;16-19,324-321	6-6,334-334[SIL];15-15,325-325[SIL];20-21,320-319[UP3]	..((((.((((((((.(((((&))))).)))))))).))))..	UAUCAGUUUGUUUUUGGUUAU&AUAAUGAAAAACAAUUUGAAA	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN3825_c0_g1_330_TPlot.pdf
TRINITY_DN3825_c0_g1:534	si_a428	TRINITY_DN3825_c0_g1	523	543	534	-31.80	-21.40	0.672955974842767	15	7-19,537-525	1-6,543-538[UP5];20-21,524-523[UP3]	..(((((((((((((......&......)))))))))))))..	ACUCCGAUGGGUCCUUUUCUA&AAAUAUAGGAUCCGUUGGAUA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN3825_c0_g1_534_TPlot.pdf
TRINITY_DN3825_c0_g1:536	si_a426	TRINITY_DN3825_c0_g1	525	545	536	-31.80	-21.30	0.669811320754717	16.5	9-21,537-525	1-8,545-538[UP5]	(((((((((((((........&........)))))))))))))	UCCGAUGGGUCCUUUUCUAGG&AUAAAUAUAGGAUCCGUUGGA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN3825_c0_g1_536_TPlot.pdf
TRINITY_DN3826_c0_g1:2978	si_a474	TRINITY_DN3826_c0_g1	2967	2987	2978	-23.60	-15.60	0.661016949152542	8.5	2-4,2986-2984;7-20,2981-2968	1-1,2987-2987[UP5];5-6,2983-2982[SIL];21-21,2967-2967[UP3]	.((((((((((((((..(((.&.)))..)))))))))))))).	GUUAUGUGACAAUGAGCACAA&AUGUAAUUAUUGUUAUAUAGA	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN3826_c0_g1_2978_TPlot.pdf
TRINITY_DN3826_c0_g1:3171	si_a498	TRINITY_DN3826_c0_g1	3156	3182	3171	-33.50	-22.00	0.656716417910448	11.5	1-9,3182-3174;10-15,3171-3166;16-21,3161-3156	x-x,3173-3172[BULt];x-x,3165-3162[BULt]	((((((....((((((..(((((((((&)))))))))--))))))----))))))	CAAGGAGUAAGGAUGGUAAAGACGACA&UGUCGUUUU--UCGUCU----UCCUUG	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN3826_c0_g1_3171_TPlot.pdf
TRINITY_DN3826_c0_g1:3303	si_a188	TRINITY_DN3826_c0_g1	3292	3312	3303	-32.00	-22.10	0.690625	10	5-13,3308-3300;15-20,3298-3293	1-4,3312-3309[UP5];14-14,3299-3299[SIL];21-21,3292-3292[UP3]	.((((((.(((((((((....&....))))))))).)))))).	GAGUGAAAAGGGAGAGAGGAA&AAUAUCUUUCCCUGUUCACUA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN3826_c0_g1_3303_TPlot.pdf
TRINITY_DN3826_c0_g1:3308	si_s75	TRINITY_DN3826_c0_g1	3297	3317	3308	-24.00	-16.30	0.679166666666667	12	5-19,3313-3299	1-4,3317-3314[UP5];20-21,3298-3297[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAGGGAGAGAGGAAAUCGU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3826_c0_g1_3308_TPlot.pdf
TRINITY_DN3826_c0_g1:3310	si_s73	TRINITY_DN3826_c0_g1	3299	3328	3310	-24.00	-17.90	0.745833333333333	22	1-6,3328-3323;7-21,3313-3299	x-x,3322-3314[BULt]	(((((((((((((((.........((((((&))))))---------)))))))))))))))	AAGGGAGAGAGGAAAUCGUCUAAAGAUAGA&UCUAUU---------UUUUUUCUUUCCUUU	3	0.999999998807864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3826_c0_g1_3310_TPlot.pdf
TRINITY_DN3826_c0_g1:3365	si_s76	TRINITY_DN3826_c0_g1	3350	3374	3365	-23.60	-16.90	0.716101694915254	13.5	3-12,3372-3363;13-21,3358-3350	1-2,3374-3373[UP5];x-x,3362-3359[BULt]	(((((((((....((((((((((..&..))))))))))----)))))))))	AGGAAAGGAUCUAAAGAAAAGGAUA&AUUUUUUUUCUU----UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3826_c0_g1_3365_TPlot.pdf
TRINITY_DN3826_c0_g1:3612	si_a543	TRINITY_DN3826_c0_g1	3602	3622	3612	-28.70	-19.50	0.679442508710801	7	2-4,3621-3619;5-13,3617-3609;15-20,3608-3603	1-1,3622-3622[UP5];x-x,3618-3618[BULt];14-14,x-x[BULq];21-21,3602-3602[UP3]	.((((((-(((((((((.(((.&.)))-))))))))).)))))).	CGAGAGA-AGAUUGAGCGCGAA&AUCG-GUUCAAUCUAUUUCUUU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN3826_c0_g1_3612_TPlot.pdf
TRINITY_DN3826_c0_g1:3680	si_s620	TRINITY_DN3826_c0_g1	3669	3690	3680	-32.10	-21.40	0.666666666666667	11.5	4-7,3687-3684;9-19,3681-3671	1-3,3690-3688[UP5];8-8,3683-3682[AILt];20-21,3670-3669[UP3]	..(((((((((((..((((...&...))))-.)))))))))))..	GAGAGAAGAUCGCCCUGGAAAA&AAAUCCA-AGCGAUCUUUUCGU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN3826_c0_g1_3680_TPlot.pdf
TRINITY_DN3826_c0_g1:3696	si_s64	TRINITY_DN3826_c0_g1	3685	3716	3696	-24.10	-15.80	0.655601659751037	25.5	1-8,3716-3709;9-21,3697-3685	x-x,3708-3698[BULt]	(((((((((((((...........((((((((&))))))))-----------)))))))))))))	GGAAAAGAUGGAGUUGGAAAGAACGUUGCUAA&UUAGCAAC-----------UUCUAUUUUUUUU	4	0.999999999999724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN3826_c0_g1_3696_TPlot.pdf
TRINITY_DN3826_c0_g1:3973	si_a12	TRINITY_DN3826_c0_g1	3962	3982	3973	-26.80	-17.90	0.667910447761194	7.5	3-7,3980-3976;9-12,3974-3971;14-21,3969-3962	1-2,3982-3981[UP5];8-8,3975-3975[SIL];13-13,3970-3970[SIL]	((((((((.((((.(((((..&..))))).)))).))))))))	GAGAUGAACAGGCCUUCUCCC&AAGAGAAAGCCUAUUUAUUUU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN3826_c0_g1_3973_TPlot.pdf
TRINITY_DN3826_c0_g1:4083	si_a183	TRINITY_DN3826_c0_g1	4072	4091	4083	-30.10	-20.00	0.664451827242525	7.5	2-6,4090-4086;8-18,4085-4075;20-20,4073-4073	1-1,4091-4091[UP5];7-7,x-x[BULq];19-19,4074-4074[SIL];21-21,4072-4072[UP3]	.(.(((((((((((-(((((.&.))))).))))))))))).).	CAGAGGGAGGGAUA-UGUCUU&UAGAUAAUAUCUUUCCCUGUU	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN3826_c0_g1_4083_TPlot.pdf
TRINITY_DN38273_c0_g1:22	si_s282	TRINITY_DN38273_c0_g1	8	31	22	-33.10	-21.90	0.661631419939577	8	2-13,30-19;14-18,15-11	1-1,31-31[UP5];x-x,18-16[BULt];19-21,10-8[UP3]	...(((((...((((((((((((.&.))))))))))))---)))))...	UUACGAUUGUCGGGCGUAUUAUGA&ACAUAAUACGCCU---AGUCGAUU	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s282_TRINITY_DN38273_c0_g1_22_TPlot.pdf
TRINITY_DN38274_c0_g1:1498	si_a66	TRINITY_DN38274_c0_g1	1488	1507	1498	-26.70	-19.80	0.741573033707865	6	1-12,1507-1496;15-21,1494-1488	13-14,1495-1495[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	GGGAGCAC-UUGGAAGGAGCG&CGCUUCUUUCAAAUUGUUUUU	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN38274_c0_g1_1498_TPlot.pdf
TRINITY_DN38274_c0_g1:1499	si_a65	TRINITY_DN38274_c0_g1	1489	1508	1499	-27.70	-19.40	0.700361010830325	6.5	2-13,1507-1496;16-21,1494-1489	1-1,1508-1508[UP5];14-15,1495-1495[AILq]	((((((.-((((((((((((.&.))))))))))))..))))))	GGAGCAC-UUGGAAGGAGCGC&UCGCUUCUUUCAAAUUGUUUU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN38274_c0_g1_1499_TPlot.pdf
TRINITY_DN38276_c0_g1:191	si_a632	TRINITY_DN38276_c0_g1	180	200	191	-26.10	-18.20	0.697318007662835	12.5	6-19,195-182	1-5,200-196[UP5];20-21,181-180[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAUCAAAAGAGUCGACGAGUG&AUUAUGUCGAUUUUUUUGAGU	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN38276_c0_g1_191_TPlot.pdf
TRINITY_DN3827_c0_g1:1010	si_a314	TRINITY_DN3827_c0_g1	996	1019	1010	-27.10	-19.50	0.719557195571956	10	2-10,1018-1010;11-21,1006-996	1-1,1019-1019[UP5];x-x,1009-1007[BULt]	(((((((((((...(((((((((.&.)))))))))---)))))))))))	GAGGAUUAUGGUGCAUGAAUCCAU&UUGGAUUUAU---CCAUGAUUUUU	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3827_c0_g1_1010_TPlot.pdf
TRINITY_DN3827_c0_g1:807	si_s797	TRINITY_DN3827_c0_g1	796	816	807	-30.00	-20.10	0.67	10	1-7,816-810;9-11,808-806;13-18,804-799	8-8,809-809[SIL];12-12,805-805[SIL];19-21,798-796[UP3]	...((((((.(((.(((((((&))))))).))).))))))...	CACCGAAGAGGAAUUGCGGGC&GCUCGUAUUUUAUCUUCGUUA	4	0.999999348004209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3827_c0_g1_807_TPlot.pdf
TRINITY_DN3827_c0_g1:808	si_s796	TRINITY_DN3827_c0_g1	797	817	808	-30.30	-21.20	0.6996699669967	8	1-8,817-810;10-12,808-806;14-19,804-799	9-9,809-809[SIL];13-13,805-805[SIL];20-21,798-797[UP3]	..((((((.(((.((((((((&)))))))).))).))))))..	ACCGAAGAGGAAUUGCGGGCU&AGCUCGUAUUUUAUCUUCGUU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3827_c0_g1_808_TPlot.pdf
TRINITY_DN3827_c0_g1:809	si_s795	TRINITY_DN3827_c0_g1	798	818	809	-30.30	-22.10	0.729372937293729	6.5	1-9,818-810;11-13,808-806;15-20,804-799	10-10,809-809[SIL];14-14,805-805[SIL];21-21,798-798[UP3]	.((((((.(((.(((((((((&))))))))).))).)))))).	CCGAAGAGGAAUUGCGGGCUU&AAGCUCGUAUUUUAUCUUCGU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN3827_c0_g1_809_TPlot.pdf
TRINITY_DN3827_c0_g1:810	si_s794	TRINITY_DN3827_c0_g1	799	819	810	-31.20	-21.90	0.701923076923077	6.5	2-10,818-810;12-14,808-806;16-21,804-799	1-1,819-819[UP5];11-11,809-809[SIL];15-15,805-805[SIL]	((((((.(((.(((((((((.&.))))))))).))).))))))	CGAAGAGGAAUUGCGGGCUUU&CAAGCUCGUAUUUUAUCUUCG	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN3827_c0_g1_810_TPlot.pdf
TRINITY_DN3827_c0_g1:811	si_s793	TRINITY_DN3827_c0_g1	800	820	811	-30.50	-19.90	0.652459016393443	8.5	3-11,818-810;13-15,808-806;17-21,804-800	1-2,820-819[UP5];12-12,809-809[SIL];16-16,805-805[SIL]	(((((.(((.(((((((((..&..))))))))).))).)))))	GAAGAGGAAUUGCGGGCUUUA&ACAAGCUCGUAUUUUAUCUUC	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN3827_c0_g1_811_TPlot.pdf
TRINITY_DN3827_c0_g1:937	si_a441	TRINITY_DN3827_c0_g1	926	945	937	-29.30	-19.80	0.675767918088737	6	1-8,945-938;10-15,937-932;17-21,930-926	9-9,x-x[BULq];16-16,931-931[SIL]	(((((.((((((-((((((((&)))))))).)))))).)))))	GACAAAUGUUUC-UAUCCAGC&GUUGGAUAUGAGAUAAUUGUU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN3827_c0_g1_937_TPlot.pdf
TRINITY_DN38285_c0_g1:66	si_a79	TRINITY_DN38285_c0_g1	55	76	66	-22.20	-14.60	0.657657657657658	12	3-8,74-69;9-19,67-57	1-2,76-75[UP5];x-x,68-68[BULt];20-21,56-55[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	AAUCUUGGUGGUGUGAAAGCUC&UUGUUUUU-CAUUAUUAAGAAA	4	0.999999990721386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN38285_c0_g1_66_TPlot.pdf
TRINITY_DN3828_c1_g1:1406	si_s820	TRINITY_DN3828_c1_g1	1395	1415	1406	-22.10	-15.60	0.705882352941176	6.5	1-5,1415-1411;8-21,1408-1395	6-7,1410-1409[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UGUUUUUUAUUAUUUUGGGAA&UUUUCUUAAUAAUGAAAAACA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN3828_c1_g1_1406_TPlot.pdf
TRINITY_DN38298_c0_g1:2315	si_s83	TRINITY_DN38298_c0_g1	2304	2324	2315	-30.90	-23.70	0.766990291262136	7.5	1-4,2324-2321;6-8,2319-2317;11-21,2314-2304	5-5,2320-2320[SIL];9-10,2316-2315[SIL]	(((((((((((..(((.((((&)))).)))..)))))))))))	GAAGAAGAGGAUUGGGCAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999951258254274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN38298_c0_g1_2315_TPlot.pdf
TRINITY_DN38298_c0_g1:356	si_a406	TRINITY_DN38298_c0_g1	345	365	356	-19.80	-13.20	0.666666666666667	12.5	6-21,360-345	1-5,365-361[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUAGAUAUGGACAAGUUUAG&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN38298_c0_g1_356_TPlot.pdf
TRINITY_DN3829_c0_g1:2669	si_s899	TRINITY_DN3829_c0_g1	2658	2678	2669	-28.30	-19.00	0.671378091872792	9.5	2-3,2677-2676;5-17,2674-2662	1-1,2678-2678[UP5];4-4,2675-2675[SIL];18-21,2661-2658[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	UCAAGAAGUUGAAGAGGUGGG&GCUUUCUCUUCAAUUUCAAUU	4	0.999999953576019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN3829_c0_g1_2669_TPlot.pdf
TRINITY_DN38312_c0_g1:1109	si_a593	TRINITY_DN38312_c0_g1	1098	1119	1109	-32.90	-22.60	0.68693009118541	8.5	2-6,1118-1114;9-20,1110-1099	1-1,1119-1119[UP5];7-8,1113-1111[AILt];21-21,1098-1098[UP3]	.((((((((((((...(((((.&.)))))-..)))))))))))).	GUGCGAGAAUUCUCCGCCUUCG&AGAAGG-ACAGAAUUUUCGCAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN38312_c0_g1_1109_TPlot.pdf
TRINITY_DN38312_c0_g1:1110	si_a592	TRINITY_DN38312_c0_g1	1099	1120	1110	-32.80	-22.40	0.682926829268293	9.5	3-7,1118-1114;10-21,1110-1099	1-2,1120-1119[UP5];8-9,1113-1111[AILt]	((((((((((((...(((((..&..)))))-..))))))))))))	UGCGAGAAUUCUCCGCCUUCGA&AAGAAGG-ACAGAAUUUUCGCA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN38312_c0_g1_1110_TPlot.pdf
TRINITY_DN38312_c0_g1:1169	si_s796	TRINITY_DN38312_c0_g1	1159	1178	1169	-30.30	-21.50	0.70957095709571	7	1-7,1178-1172;10-12,1169-1167;14-21,1166-1159	8-9,1171-1170[SIL];13-13,x-x[BULq]	((((((((-(((..(((((((&)))))))..))).))))))))	GGCGAAGA-AAAUGACGGGCU&AGCUCGUAUUUUAUCUUCGUU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN38312_c0_g1_1169_TPlot.pdf
TRINITY_DN38312_c0_g1:1170	si_s795	TRINITY_DN38312_c0_g1	1160	1179	1170	-30.30	-21.20	0.6996699669967	7.5	2-8,1178-1172;11-13,1169-1167;15-21,1166-1160	1-1,1179-1179[UP5];9-10,1171-1170[SIL];14-14,x-x[BULq]	(((((((-(((..(((((((.&.)))))))..))).)))))))	GCGAAGA-AAAUGACGGGCUA&AAGCUCGUAUUUUAUCUUCGU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN38312_c0_g1_1170_TPlot.pdf
TRINITY_DN38312_c0_g1:1231	si_a248	TRINITY_DN38312_c0_g1	1220	1241	1231	-40.20	-26.68	0.663681592039801	9	2-3,1240-1239;4-10,1237-1231;14-21,1227-1220	1-1,1241-1241[UP5];x-x,1238-1238[BULt];11-13,1230-1228[SIL]	((((((((...(((((((.((.&.))-)))))))...))))))))	CUCGGUAUCGGCGGGGGACUCA&CGA-UCCCCCGAUUGUAUCGAG	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a248_TRINITY_DN38312_c0_g1_1231_TPlot.pdf
TRINITY_DN38312_c0_g1:1242	si_a766	TRINITY_DN38312_c0_g1	1232	1251	1242	-30.50	-19.90	0.652459016393443	7.5	1-11,1251-1241;13-14,1240-1239;16-17,1237-1236;20-21,1233-1232	12-12,x-x[BULq];15-15,1238-1238[SIL];18-19,1235-1234[SIL]	((..((.((-(((((((((((&))))))))))).)).))..))	GGGGGACUC-AUCAAAGGCCC&GGGUUUUUGAUUGAUUCAACU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN38312_c0_g1_1242_TPlot.pdf
TRINITY_DN38312_c0_g1:980	si_s155	TRINITY_DN38312_c0_g1	968	989	980	-42.00	-28.80	0.685714285714286	7	3-10,987-980;12-14,978-976;15-20,974-969	1-2,989-988[UP5];11-11,979-979[SIL];x-x,975-975[BULt];21-21,968-968[UP3]	.((((((.(((.((((((((..&..)))))))).)))-)))))).	GCCUGGCUCAUCAACCUCCUCU&AAAGGAGGUUCAUG-GCCAGGG	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN38312_c0_g1_980_TPlot.pdf
TRINITY_DN38312_c0_g2:751	si_a565	TRINITY_DN38312_c0_g2	740	760	751	-37.40	-25.20	0.67379679144385	8	1-8,760-753;10-10,751-751;13-19,748-742	9-9,752-752[SIL];11-12,750-749[SIL];20-21,741-740[UP3]	..(((((((..(.((((((((&)))))))).)..)))))))..	ACCAUACGAAACCCGGGGAGA&UCUCCCCGUGAAUCGUAUGUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN38312_c0_g2_751_TPlot.pdf
TRINITY_DN3831_c0_g2:748	si_a490	TRINITY_DN3831_c0_g2	737	756	748	-28.10	-18.60	0.661921708185053	10	4-8,753-749;10-21,748-737	1-3,756-754[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	AUGAAAGACGGC-UGUUCCAA&AUAGAAUAUGUCGUUUUUCGU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN3831_c0_g2_748_TPlot.pdf
TRINITY_DN38359_c0_g1:1538	si_s899	TRINITY_DN38359_c0_g1	1528	1547	1538	-28.30	-20.00	0.706713780918728	6	2-11,1546-1537;14-21,1535-1528	1-1,1547-1547[UP5];12-13,1536-1536[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	GAUUGAGAC-GAAGAGAAGGA&GCUUUCUCUUCAAUUUCAAUU	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN38359_c0_g1_1538_TPlot.pdf
TRINITY_DN3835_c1_g4:173	si_s8	TRINITY_DN3835_c1_g4	162	182	173	-21.30	-15.10	0.708920187793427	9	1-15,182-168	16-21,167-162[UP3]	......(((((((((((((((&)))))))))))))))......	CAGAUUGUAAUAAUGGGUGAU&AUUACUUAUUAUUACUAUAUU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN3835_c1_g4_173_TPlot.pdf
TRINITY_DN3835_c1_g4:174	si_s7	TRINITY_DN3835_c1_g4	163	183	174	-21.70	-15.10	0.695852534562212	9	2-16,182-168	1-1,183-183[UP5];17-21,167-163[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGAUUGUAAUAAUGGGUGAUU&UAUUACUUAUUAUUACUAUAU	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN3835_c1_g4_174_TPlot.pdf
TRINITY_DN3835_c1_g4:175	si_s6	TRINITY_DN3835_c1_g4	164	184	175	-21.70	-15.10	0.695852534562212	10	3-17,182-168	1-2,184-183[UP5];18-21,167-164[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAUUGUAAUAAUGGGUGAUUC&AUAUUACUUAUUAUUACUAUA	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN3835_c1_g4_175_TPlot.pdf
TRINITY_DN3835_c1_g4:177	si_s4	TRINITY_DN3835_c1_g4	166	186	177	-21.60	-15.10	0.699074074074074	12	5-19,182-168	1-4,186-183[UP5];20-21,167-166[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUGUAAUAAUGGGUGAUUCAU&UUAUAUUACUUAUUAUUACUA	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN3835_c1_g4_177_TPlot.pdf
TRINITY_DN38363_c0_g1:1345	si_s75	TRINITY_DN38363_c0_g1	1333	1354	1345	-24.00	-16.60	0.691666666666667	5.5	1-15,1354-1340;16-18,1338-1336;20-21,1334-1333	x-x,1339-1339[BULt];19-19,1335-1335[SIL]	((.(((.(((((((((((((((&)))))))))))))))-))).))	AGCAAGAGGAGGAGAAAGAAUA&UAUUUUUUUUCUUUC-CUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN38363_c0_g1_1345_TPlot.pdf
TRINITY_DN38363_c0_g1:1346	si_s74	TRINITY_DN38363_c0_g1	1336	1355	1346	-25.00	-16.50	0.66	6	2-14,1354-1342;16-20,1341-1337	1-1,1355-1355[UP5];15-15,x-x[BULq];21-21,1336-1336[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	AAGAGG-AGGAGAAAGAAUAA&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN38363_c0_g1_1346_TPlot.pdf
TRINITY_DN38363_c0_g1:1348	si_s72	TRINITY_DN38363_c0_g1	1336	1358	1348	-24.10	-17.20	0.713692946058091	6	1-4,1358-1355;5-18,1353-1340;19-21,1338-1336	x-x,1354-1354[BULt];x-x,1339-1339[BULt]	(((.((((((((((((((.((((&))))-))))))))))))))-)))	AAGAGGAGGAGAAAGAAUAAGAA&UUCU-AUUUUUUUUCUUUC-CUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN38363_c0_g1_1348_TPlot.pdf
TRINITY_DN38363_c0_g1:1349	si_s71	TRINITY_DN38363_c0_g1	1337	1359	1349	-25.70	-18.90	0.735408560311284	5.5	1-5,1359-1355;6-19,1353-1340;20-21,1338-1337	x-x,1354-1354[BULt];x-x,1339-1339[BULt]	((.((((((((((((((.(((((&)))))-))))))))))))))-))	AGAGGAGGAGAAAGAAUAAGAAG&CUUCU-AUUUUUUUUCUUUC-CU	3	0.999999987771236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN38363_c0_g1_1349_TPlot.pdf
TRINITY_DN38363_c0_g1:1351	si_s69	TRINITY_DN38363_c0_g1	1340	1361	1351	-23.40	-19.80	0.846153846153846	5.5	2-7,1360-1355;8-21,1353-1340	1-1,1361-1361[UP5];x-x,1354-1354[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	GGAGGAGAAAGAAUAAGAAGUC&AACUUCU-AUUUUUUUUCUUUC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN38363_c0_g1_1351_TPlot.pdf
TRINITY_DN38363_c0_g1:1407	si_s420	TRINITY_DN38363_c0_g1	1396	1416	1407	-23.70	-15.50	0.654008438818565	9	3-16,1414-1401	1-2,1416-1415[UP5];17-21,1400-1396[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAGCGGUUAUAUAGAAUGUUA&ACAUAUUCUAUAUAACAAUAA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s420_TRINITY_DN38363_c0_g1_1407_TPlot.pdf
TRINITY_DN38363_c0_g1:526	si_s79	TRINITY_DN38363_c0_g1	515	536	526	-26.20	-19.10	0.729007633587786	9.5	1-7,536-530;10-20,526-516	8-9,529-527[AILt];21-21,515-515[UP3]	.(((((((((((...(((((((&)))))))-..))))))))))).	UGGGAGAGAGGAUGCGAAGAAA&UUUUUUC-UUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN38363_c0_g1_526_TPlot.pdf
TRINITY_DN38371_c0_g1:1081	si_s796	TRINITY_DN38371_c0_g1	1068	1090	1081	-30.30	-19.90	0.656765676567657	12	2-10,1089-1081;11-19,1078-1070	1-1,1090-1090[UP5];x-x,1080-1079[BULt];20-21,1069-1068[UP3]	..(((((((((..(((((((((.&.)))))))))--)))))))))..	UUUGAGGAUAGCCGAUGCGAGUA&AGCUCGUAUU--UUAUCUUCGUU	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN38371_c0_g1_1081_TPlot.pdf
TRINITY_DN3837_c0_g2:372	si_a872	TRINITY_DN3837_c0_g2	361	381	372	-27.00	-19.60	0.725925925925926	4	1-18,381-364;20-21,362-361	19-19,363-363[SIL]	((.((((((((((((((((((&)))))))))))))))))).))	UGUUUGUAGCUAGAUUUUUAA&UUAAAGAUUUAGUUGCAAUCA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN3837_c0_g2_372_TPlot.pdf
TRINITY_DN3837_c0_g2:373	si_a871	TRINITY_DN3837_c0_g2	362	382	373	-26.40	-18.40	0.696969696969697	6	2-19,381-364	1-1,382-382[UP5];20-21,363-362[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GUUUGUAGCUAGAUUUUUAAG&AUUAAAGAUUUAGUUGCAAUC	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN3837_c0_g2_373_TPlot.pdf
TRINITY_DN3837_c0_g2:376	si_a868	TRINITY_DN3837_c0_g2	365	385	376	-24.80	-17.40	0.701612903225806	9.5	5-21,381-365	1-4,385-382[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGUAGCUAGAUUUUUAAGUGG&AUUAUUAAAGAUUUAGUUGCA	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN3837_c0_g2_376_TPlot.pdf
TRINITY_DN3837_c0_g2:377	si_a867	TRINITY_DN3837_c0_g2	366	386	377	-24.10	-15.90	0.659751037344398	11.5	6-21,381-366	1-5,386-382[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUAGCUAGAUUUUUAAGUGGA&AAUUAUUAAAGAUUUAGUUGC	2	0.974564613511492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN3837_c0_g2_377_TPlot.pdf
TRINITY_DN3837_c0_g2:728	si_a70	TRINITY_DN3837_c0_g2	717	736	728	-23.90	-17.80	0.744769874476988	6.5	1-8,736-729;10-18,728-720	9-9,x-x[BULq];19-21,719-717[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	UUAGAGAAACAG-UUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3837_c0_g2_728_TPlot.pdf
TRINITY_DN3837_c0_g2:729	si_a69	TRINITY_DN3837_c0_g2	718	737	729	-24.00	-18.00	0.75	6.5	2-9,736-729;11-19,728-720	1-1,737-737[UP5];10-10,x-x[BULq];20-21,719-718[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	UAGAGAAACAG-UUGAAAGAU&UUCUUUCAAAUUGUUUUUCAU	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3837_c0_g2_729_TPlot.pdf
TRINITY_DN383_c1_g1:148	si_s88	TRINITY_DN383_c1_g1	132	158	148	-34.80	-24.70	0.709770114942529	8.5	1-4,158-155;5-14,153-144;15-21,138-132	x-x,154-154[BULt];x-x,143-139[BULt]	(((((((.....((((((((((.((((&))))-))))))))))-----)))))))	GAAGUGAUCUAUAGAGGAAGAAUAGGA&UCCU-UUCUUCUUCU-----UCGCUUC	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN383_c1_g1_148_TPlot.pdf
TRINITY_DN383_c1_g1:153	si_s68	TRINITY_DN383_c1_g1	142	162	153	-23.10	-17.90	0.774891774891775	7	1-2,162-161;4-19,159-144	3-3,160-160[SIL];20-21,143-142[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	AUAGAGGAAGAAUAGGAGAUG&CAACUUCUAUUUUUUUUCUUU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN383_c1_g1_153_TPlot.pdf
TRINITY_DN383_c1_g1:155	si_s66	TRINITY_DN383_c1_g1	144	164	155	-26.30	-18.10	0.688212927756654	7.5	3-4,162-161;6-21,159-144	1-2,164-163[UP5];5-5,160-160[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	AGAGGAAGAAUAGGAGAUGAA&AGCAACUUCUAUUUUUUUUCU	4	0.999988269255955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN383_c1_g1_155_TPlot.pdf
TRINITY_DN383_c1_g1:157	si_a780	TRINITY_DN383_c1_g1	146	164	157	-27.30	-18.10	0.663003663003663	7	1-4,164-161;7-20,160-147	5-6,x-x[BULq];21-21,146-146[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	AGGAAGAAUAGGAGA--UGAA&UUCAACUCUUCUAUUUUUCUA	3	0.999999532366031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN383_c1_g1_157_TPlot.pdf
TRINITY_DN383_c1_g1:158	si_a779	TRINITY_DN383_c1_g1	147	165	158	-27.00	-17.60	0.651851851851852	7	2-5,164-161;8-21,160-147	1-1,165-165[UP5];6-7,x-x[BULq]	((((((((((((((--((((.&.))))..))))))))))))))	GGAAGAAUAGGAGA--UGAAC&AUUCAACUCUUCUAUUUUUCU	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN383_c1_g1_158_TPlot.pdf
TRINITY_DN383_c1_g1:181	si_a547	TRINITY_DN383_c1_g1	170	191	181	-26.90	-18.70	0.695167286245353	9.5	1-5,191-187;7-9,184-182;12-21,179-170	6-6,186-185[AILt];10-11,181-180[SIL]	((((((((((..(((..(((((&)))))-.)))..))))))))))	AGAUGAAGAAUAGGAGAUGAAC&GUUCA-AUCUAUUUCUUUAUCU	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN383_c1_g1_181_TPlot.pdf
TRINITY_DN383_c1_g1:182	si_a546	TRINITY_DN383_c1_g1	171	192	182	-28.60	-18.70	0.653846153846154	10	1-6,192-187;8-10,184-182;13-21,179-171	7-7,186-185[AILt];11-12,181-180[SIL]	(((((((((..(((..((((((&))))))-.)))..)))))))))	GAUGAAGAAUAGGAGAUGAACU&GGUUCA-AUCUAUUUCUUUAUC	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN383_c1_g1_182_TPlot.pdf
TRINITY_DN383_c1_g1:1906	si_s485	TRINITY_DN383_c1_g1	1895	1915	1906	-18.10	-15.10	0.834254143646409	6	2-19,1914-1897	1-1,1915-1915[UP5];20-21,1896-1895[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAUAUAUUUGAAUAGGUAUAA&CUAUAUUUAUUUAAAUAUAAA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN383_c1_g1_1906_TPlot.pdf
TRINITY_DN383_c1_g1:1921	si_a401	TRINITY_DN383_c1_g1	1910	1930	1921	-22.60	-17.10	0.756637168141593	6	1-7,1930-1924;9-21,1922-1910	8-8,1923-1923[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GUAUAAAUAAAAUUGUUCUGU&AUAGAAUUGUUUUGUUUAUAU	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN383_c1_g1_1921_TPlot.pdf
TRINITY_DN383_c1_g1:1922	si_a400	TRINITY_DN383_c1_g1	1911	1931	1922	-22.80	-16.70	0.732456140350877	5.5	1-8,1931-1924;10-21,1922-1911	9-9,1923-1923[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UAUAAAUAAAAUUGUUCUGUA&UAUAGAAUUGUUUUGUUUAUA	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN383_c1_g1_1922_TPlot.pdf
TRINITY_DN383_c1_g1:1923	si_a399	TRINITY_DN383_c1_g1	1912	1932	1923	-22.60	-16.60	0.734513274336283	5.5	1-9,1932-1924;11-21,1922-1912	10-10,1923-1923[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AUAAAUAAAAUUGUUCUGUAU&AUAUAGAAUUGUUUUGUUUAU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN383_c1_g1_1923_TPlot.pdf
TRINITY_DN383_c1_g1:1924	si_a398	TRINITY_DN383_c1_g1	1913	1933	1924	-22.40	-15.80	0.705357142857143	6.5	2-10,1932-1924;12-21,1922-1913	1-1,1933-1933[UP5];11-11,1923-1923[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	UAAAUAAAAUUGUUCUGUAUA&AAUAUAGAAUUGUUUUGUUUA	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN383_c1_g1_1924_TPlot.pdf
TRINITY_DN383_c1_g1:2018	si_s773	TRINITY_DN383_c1_g1	2006	2027	2018	-23.10	-15.30	0.662337662337662	11	5-14,2023-2014;15-20,2012-2007	1-4,2027-2024[UP5];x-x,2013-2013[BULt];21-21,2006-2006[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	AUUUAUAUGCAGUGGUAAAAAA&UUAAUUACUAUUGC-UAUAAAA	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN383_c1_g1_2018_TPlot.pdf
TRINITY_DN3840_c0_g1:514	si_a407	TRINITY_DN3840_c0_g1	503	523	514	-19.80	-13.10	0.661616161616162	8.5	5-21,519-503	1-4,523-520[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUUUAAAUGUAAAUAAACUAG&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3840_c0_g1_514_TPlot.pdf
TRINITY_DN3840_c0_g1:746	si_a301	TRINITY_DN3840_c0_g1	735	755	746	-27.80	-18.20	0.654676258992806	16.5	7-18,749-738	1-6,755-750[UP5];19-21,737-735[UP3]	...((((((((((((......&......))))))))))))...	CCUUCCAGGCGAGUUGGCAGA&AAAAAAGAUUCGCUUGGAUUU	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN3840_c0_g1_746_TPlot.pdf
TRINITY_DN3840_c0_g1:841	si_a403	TRINITY_DN3840_c0_g1	829	850	841	-22.00	-14.60	0.663636363636364	5	1-3,850-848;5-14,846-837;15-20,835-830	4-4,847-847[SIL];x-x,836-836[BULt];21-21,829-829[UP3]	.((((((.((((((((((.(((&))).))))))))))-)))))).	CAAUGUAGGACAAAACAAAUCU&AGAAUUGUUUUGUU-UAUAUUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN3840_c0_g1_841_TPlot.pdf
TRINITY_DN3840_c0_g1:842	si_a402	TRINITY_DN3840_c0_g1	830	851	842	-22.40	-14.60	0.651785714285714	5	2-4,850-848;6-15,846-837;16-21,835-830	1-1,851-851[UP5];5-5,847-847[SIL];x-x,836-836[BULt]	((((((.((((((((((.(((.&.))).))))))))))-))))))	AAUGUAGGACAAAACAAAUCUU&UAGAAUUGUUUUGUU-UAUAUU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN3840_c0_g1_842_TPlot.pdf
TRINITY_DN3842_c0_g1:758	si_s632	TRINITY_DN3842_c0_g1	749	768	758	-38.20	-25.00	0.654450261780105	7	1-5,768-764;6-14,762-754;18-21,752-749	x-x,763-763[BULt];15-17,753-753[AILq]	((((.--(((((((((.(((((&)))))-)))))))))...))))	GGGCU--CGCCUAUGAUAGAGA&UCUUU-UCGUAGGCGUUUGCCC	2	0.995866999552873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN3842_c0_g1_758_TPlot.pdf
TRINITY_DN3846_c0_g1:730	si_s95	TRINITY_DN3846_c0_g1	718	739	730	-36.30	-23.60	0.650137741046832	6.5	1-7,739-733;10-14,730-726;15-21,724-718	8-9,732-731[SIL];x-x,725-725[BULt]	(((((((.(((((..(((((((&)))))))..)))))-)))))))	CCAAUCUGGAAGUAUAGAAGAA&UUCUUCUUCGCUUC-GGAUUGG	3	0.999999594151943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN3846_c0_g1_730_TPlot.pdf
TRINITY_DN3846_c0_g1:985	si_a350	TRINITY_DN3846_c0_g1	974	994	985	-20.30	-13.80	0.679802955665025	7	1-9,994-986;12-15,983-980;17-21,978-974	10-11,985-984[SIL];16-16,979-979[SIL]	(((((.((((..(((((((((&)))))))))..)))).)))))	UCAAAUUAGAUCUGGUAUUUU&AAAAUAUUAAUUCUAUUUUGA	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN3846_c0_g1_985_TPlot.pdf
TRINITY_DN3848_c0_g1:610	si_s746	TRINITY_DN3848_c0_g1	598	619	610	-27.00	-18.60	0.688888888888889	7	2-11,618-609;12-18,607-601	1-1,619-619[UP5];x-x,608-608[BULt];19-21,600-598[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	GCAUUUUAAGCGUCAAUCUGUA&AAUAGAUUGAC-CUUAAAACAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN3848_c0_g1_610_TPlot.pdf
TRINITY_DN3849_c0_g1:2079	si_a804	TRINITY_DN3849_c0_g1	2066	2088	2079	-37.20	-24.80	0.666666666666667	11	5-11,2084-2078;12-21,2075-2066	1-4,2088-2085[UP5];x-x,2077-2076[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	UCUUCUUCGCAAUUCGGAUACCA&UCCAAUCCGAA--GCGAAGAAGA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN3849_c0_g1_2079_TPlot.pdf
TRINITY_DN384_c1_g1:37	si_a887	TRINITY_DN384_c1_g1	26	46	37	-22.90	-17.70	0.77292576419214	4	1-9,46-38;11-21,36-26	10-10,37-37[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UUAUUAUUAUUUUAUUGGUUG&CAAUCAAUAUAGUAAUAAUAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN384_c1_g1_37_TPlot.pdf
TRINITY_DN3850_c0_g1:1211	si_a407	TRINITY_DN3850_c0_g1	1200	1220	1211	-19.80	-14.10	0.712121212121212	9.5	1-14,1220-1207	15-21,1206-1200[UP3]	.......((((((((((((((&)))))))))))))).......	UAGCUGCUGUAAACAGAGCAA&UUGUUUUGUUUAUAUUUAAAU	2	0.999931998497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3850_c0_g1_1211_TPlot.pdf
TRINITY_DN3850_c0_g1:1216	si_a402	TRINITY_DN3850_c0_g1	1205	1226	1216	-22.40	-17.80	0.794642857142857	7	1-4,1226-1223;5-19,1221-1207	x-x,1222-1222[BULt];20-21,1206-1205[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	GCUGUAAACAGAGCAAUGUCUG&UAGA-AUUGUUUUGUUUAUAUU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN3850_c0_g1_1216_TPlot.pdf
TRINITY_DN3850_c0_g1:1218	si_a400	TRINITY_DN3850_c0_g1	1207	1228	1218	-22.80	-17.70	0.776315789473684	8	3-6,1226-1223;7-21,1221-1207	1-2,1228-1227[UP5];x-x,1222-1222[BULt]	(((((((((((((((.((((..&..))))-)))))))))))))))	UGUAAACAGAGCAAUGUCUGCA&UAUAGA-AUUGUUUUGUUUAUA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN3850_c0_g1_1218_TPlot.pdf
TRINITY_DN3850_c0_g1:1219	si_a399	TRINITY_DN3850_c0_g1	1208	1229	1219	-22.60	-16.50	0.730088495575221	10	4-7,1226-1223;8-21,1221-1208	1-3,1229-1227[UP5];x-x,1222-1222[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GUAAACAGAGCAAUGUCUGCAA&AUAUAGA-AUUGUUUUGUUUAU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN3850_c0_g1_1219_TPlot.pdf
TRINITY_DN3850_c0_g1:1220	si_a398	TRINITY_DN3850_c0_g1	1209	1230	1220	-22.40	-15.20	0.678571428571429	11	5-8,1226-1223;9-21,1221-1209	1-4,1230-1227[UP5];x-x,1222-1222[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	UAAACAGAGCAAUGUCUGCAAA&AAUAUAGA-AUUGUUUUGUUUA	2	0.999888125717722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN3850_c0_g1_1220_TPlot.pdf
TRINITY_DN38512_c0_g1:45	si_s548	TRINITY_DN38512_c0_g1	31	54	45	-22.50	-15.02	0.667555555555556	11	1-10,54-45;13-21,39-31	11-12,44-40[AILt]	(((((((((.....((((((((((&))))))))))---..)))))))))	AAUGUUGAUAACAGUAUUUUGAUC&GAUCAAAAUA---GAAUUAAUAUU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN38512_c0_g1_45_TPlot.pdf
TRINITY_DN38512_c0_g1:853	si_a464	TRINITY_DN38512_c0_g1	842	862	853	-19.60	-12.90	0.658163265306122	7.5	1-15,862-848	16-21,847-842[UP3]	......(((((((((((((((&)))))))))))))))......	UUGAGAUAUAUAUUGUAUAUA&UAUAUAUAAUAUGUAAUUAUU	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN38512_c0_g1_853_TPlot.pdf
TRINITY_DN38512_c0_g1:854	si_a463	TRINITY_DN38512_c0_g1	843	863	854	-19.70	-13.00	0.65989847715736	7.5	2-16,862-848	1-1,863-863[UP5];17-21,847-843[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGAGAUAUAUAUUGUAUAUAC&UUAUAUAUAAUAUGUAAUUAU	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN38512_c0_g1_854_TPlot.pdf
TRINITY_DN3851_c0_g1:182	si_a314	TRINITY_DN3851_c0_g1	170	191	182	-27.10	-17.70	0.653136531365314	6	1-11,191-181;12-13,179-178;15-21,176-170	x-x,180-180[BULt];14-14,177-177[SIL]	(((((((.((.(((((((((((&)))))))))))-)).)))))))	GAAAGUCUUGUGAUAAAUCUGA&UUGGAUUUAUC-CAUGAUUUUU	1	0.194733473857745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3851_c0_g1_182_TPlot.pdf
TRINITY_DN3852_c0_g1:1075	si_a429	TRINITY_DN3852_c0_g1	1064	1084	1075	-32.00	-22.30	0.696875	11	5-18,1080-1067	1-4,1084-1081[UP5];19-21,1066-1064[UP3]	...((((((((((((((....&....))))))))))))))...	UUUUUCGACGGAUCCUACGUA&AAUAUAGGAUCCGUUGGAUAU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN3852_c0_g1_1075_TPlot.pdf
TRINITY_DN3852_c0_g1:1079	si_a425	TRINITY_DN3852_c0_g1	1068	1088	1079	-30.80	-20.80	0.675324675324675	16	9-21,1080-1068	1-8,1088-1081[UP5]	(((((((((((((........&........)))))))))))))	UCGACGGAUCCUACGUAGGAU&AAUAAAUAUAGGAUCCGUUGG	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN3852_c0_g1_1079_TPlot.pdf
TRINITY_DN3852_c0_g1:2087	si_s377	TRINITY_DN3852_c0_g1	2076	2099	2087	-44.10	-29.70	0.673469387755102	10.5	1-6,2099-2094;7-9,2092-2090;10-18,2087-2079;21-21,2076-2076	x-x,2093-2093[BULt];x-x,2089-2088[BULt];19-20,2078-2077[SIL]	(..(((((((((..(((.((((((&))))))-)))--)))))))))..)	GGUAGGCGGGCAGAUGCUGAGCGG&UCGCUC-GCG--UGUCCGCCUUAC	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN3852_c0_g1_2087_TPlot.pdf
TRINITY_DN3852_c1_g1:13948	si_s92	TRINITY_DN3852_c1_g1	13927	13957	13948	-34.90	-23.70	0.679083094555874	25	2-10,13956-13948;11-21,13937-13927	1-1,13957-13957[UP5];x-x,13947-13938[BULt]	(((((((((((..........(((((((((.&.)))))))))----------)))))))))))	AUCUGAGGCGAAACAUUGAGCGGAAGAGGGC&UUCUUCUUCU----------UCGCUUCGGAU	4	0.999999998797842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3852_c1_g1_13948_TPlot.pdf
TRINITY_DN3852_c1_g1:13995	si_s69	TRINITY_DN3852_c1_g1	13984	14003	13995	-23.40	-16.70	0.713675213675214	10	2-9,14002-13995;12-21,13993-13984	1-1,14003-14003[UP5];10-11,13994-13994[AILq]	((((((((((.-((((((((.&.))))))))..))))))))))	GGGAGGAGAAU-GUGGGAGUC&AACUUCUAUUUUUUUUCUUUC	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3852_c1_g1_13995_TPlot.pdf
TRINITY_DN3852_c1_g1:17549	si_a534	TRINITY_DN3852_c1_g1	17540	17558	17549	-39.70	-26.20	0.659949622166247	6	2-11,17557-17548;14-20,17547-17541	1-1,17558-17558[UP5];12-13,x-x[BULq];21-21,17540-17540[UP3]	.(((((((--((((((((((.&.))))))))))..))))))).	CAUUGAAC--GUCGCUCGCGG&ACGCGAGCGAUCGGUUCAAUC	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a534_TRINITY_DN3852_c1_g1_17549_TPlot.pdf
TRINITY_DN3852_c1_g1:17609	si_a266	TRINITY_DN3852_c1_g1	17598	17618	17609	-38.30	-25.20	0.657963446475196	11.5	1-3,17618-17616;5-7,17614-17612;10-16,17609-17603	4-4,17615-17615[SIL];8-9,17611-17610[SIL];17-21,17602-17598[UP3]	.....(((((((..(((.(((&))).)))..))))))).....	GCAAAGUGGGCGGAUGCGCUC&GAGGGCAAACGCCUACGAAAA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN3852_c1_g1_17609_TPlot.pdf
TRINITY_DN3852_c1_g1:17610	si_a265	TRINITY_DN3852_c1_g1	17599	17619	17610	-39.80	-27.60	0.693467336683417	10.5	1-4,17619-17616;6-8,17614-17612;11-17,17609-17603	5-5,17615-17615[SIL];9-10,17611-17610[SIL];18-21,17602-17599[UP3]	....(((((((..(((.((((&)))).)))..)))))))....	CAAAGUGGGCGGAUGCGCUCG&CGAGGGCAAACGCCUACGAAA	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a265_TRINITY_DN3852_c1_g1_17610_TPlot.pdf
TRINITY_DN3852_c1_g1:17613	si_a262	TRINITY_DN3852_c1_g1	17602	17622	17613	-40.30	-27.80	0.689826302729529	10.5	3-7,17620-17616;9-11,17614-17612;14-20,17609-17603	1-2,17622-17621[UP5];8-8,17615-17615[SIL];12-13,17611-17610[SIL];21-21,17602-17602[UP3]	.(((((((..(((.(((((..&..))))).)))..))))))).	AGUGGGCGGAUGCGCUCGGCA&UAUCGAGGGCAAACGCCUACG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a262_TRINITY_DN3852_c1_g1_17613_TPlot.pdf
TRINITY_DN3852_c1_g1:17852	si_s61	TRINITY_DN3852_c1_g1	17841	17861	17852	-26.50	-17.40	0.656603773584906	11.5	2-4,17860-17858;7-18,17855-17844	1-1,17861-17861[UP5];5-6,17857-17856[SIL];19-21,17843-17841[UP3]	...((((((((((((..(((.&.)))..))))))))))))...	CAUGGUGGAAGUUGUGUGCUC&AAGUUAGCAACUUCUAUUUUU	3	0.999993094182893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN3852_c1_g1_17852_TPlot.pdf
TRINITY_DN3852_c1_g1:18466	si_a40	TRINITY_DN3852_c1_g1	18455	18475	18466	-40.50	-26.70	0.659259259259259	8	3-12,18473-18464;14-20,18462-18456	1-2,18475-18474[UP5];13-13,18463-18463[SIL];21-21,18455-18455[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	UCUUCUGGUCCUAUUGGUCAC&AAGACCGGUAGGUCUAGGAGU	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN3852_c1_g1_18466_TPlot.pdf
TRINITY_DN3852_c1_g1:18467	si_a39	TRINITY_DN3852_c1_g1	18456	18476	18467	-40.10	-26.50	0.660847880299252	9	4-13,18473-18464;15-21,18462-18456	1-3,18476-18474[UP5];14-14,18463-18463[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	CUUCUGGUCCUAUUGGUCACA&UAAGACCGGUAGGUCUAGGAG	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a39_TRINITY_DN3852_c1_g1_18467_TPlot.pdf
TRINITY_DN3852_c1_g1:18545	si_s617	TRINITY_DN3852_c1_g1	18535	18554	18545	-28.30	-18.50	0.653710247349823	11	3-10,18552-18545;12-17,18544-18539	1-2,18554-18553[UP5];11-11,x-x[BULq];18-21,18538-18535[UP3]	....((((((-((((((((..&..)))))))).))))))....	CGACGAUCGC-UGGGUUUGUA&UUUAAAUCCAAGCGAUCUUUU	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN3852_c1_g1_18545_TPlot.pdf
TRINITY_DN3852_c1_g1:18548	si_s614	TRINITY_DN3852_c1_g1	18538	18557	18548	-28.30	-18.50	0.653710247349823	13	6-13,18552-18545;15-20,18544-18539	1-5,18557-18553[UP5];14-14,x-x[BULq];21-21,18538-18538[UP3]	.((((((-((((((((.....&.....)))))))).)))))).	CGAUCGC-UGGGUUUGUAGCA&UUUUUUAAAUCCAAGCGAUCU	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN3852_c1_g1_18548_TPlot.pdf
TRINITY_DN3852_c1_g1:18580	si_a172	TRINITY_DN3852_c1_g1	18569	18590	18580	-31.90	-20.80	0.652037617554859	11	3-6,18588-18585;7-15,18583-18575	1-2,18590-18589[UP5];x-x,18584-18584[BULt];16-21,18574-18569[UP3]	......(((((((((.((((..&..))))-)))))))))......	UCUAGCUCUAGACGGUGUGACA&AUUCAC-CCGUCUAGAUAAUAU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN3852_c1_g1_18580_TPlot.pdf
TRINITY_DN3852_c1_g1:18582	si_a170	TRINITY_DN3852_c1_g1	18571	18592	18582	-33.40	-21.90	0.655688622754491	11	1-2,18592-18591;5-8,18588-18585;9-17,18583-18575	3-4,18590-18589[SIL];x-x,18584-18584[BULt];18-21,18574-18571[UP3]	....(((((((((.((((..((&))..))))-)))))))))....	UAGCUCUAGACGGUGUGACAGG&CUAUUCAC-CCGUCUAGAUAAU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN3852_c1_g1_18582_TPlot.pdf
TRINITY_DN3852_c1_g1:18586	si_a167	TRINITY_DN3852_c1_g1	18574	18595	18586	-34.00	-22.10	0.65	12	3-5,18593-18591;8-11,18588-18585;12-20,18583-18575	1-2,18595-18594[UP5];6-7,18590-18589[SIL];x-x,18584-18584[BULt];21-21,18574-18574[UP3]	.(((((((((.((((..(((..&..)))..))))-))))))))).	CUCUAGACGGUGUGACAGGGCC&AAUCUAUUCAC-CCGUCUAGAU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a167_TRINITY_DN3852_c1_g1_18586_TPlot.pdf
TRINITY_DN3852_c1_g1:2119	si_s524	TRINITY_DN3852_c1_g1	2107	2128	2119	-23.90	-16.20	0.677824267782427	10.5	5-17,2124-2112;18-21,2110-2107	1-4,2128-2125[UP5];x-x,2111-2111[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	UCGGCAGAUGAUUUCGAGCAGA&UUAAUUCGAAAUCAUUU-UUGA	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN3852_c1_g1_2119_TPlot.pdf
TRINITY_DN3852_c1_g1:2302	si_s91	TRINITY_DN3852_c1_g1	2291	2311	2302	-34.70	-23.20	0.668587896253602	8	1-14,2311-2298;16-21,2296-2291	15-15,2297-2297[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UUCGAGCCGGGGAGGGGGAGA&UUUCUUCUUCUUCGCUUCGGA	3	0.999999999999556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3852_c1_g1_2302_TPlot.pdf
TRINITY_DN3852_c1_g1:2311	si_a544	TRINITY_DN3852_c1_g1	2300	2320	2311	-28.90	-19.10	0.660899653979239	7.5	2-12,2319-2309;14-20,2307-2301	1-1,2320-2320[UP5];13-13,2308-2308[SIL];21-21,2300-2300[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	GGGAGGGGGAGAUUGAGCUGC&UCGGUUCAAUCUAUUUCUUUA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN3852_c1_g1_2311_TPlot.pdf
TRINITY_DN3852_c1_g1:2356	si_s604	TRINITY_DN3852_c1_g1	2345	2365	2356	-26.80	-17.80	0.664179104477612	6.5	1-2,2365-2364;4-14,2362-2352;17-21,2349-2345	3-3,2363-2363[SIL];15-16,2351-2350[SIL]	(((((..(((((((((((.((&)).)))))))))))..)))))	GAUUUUUGAAGGAUUUGCAUG&CAAGCGAAUCUUUUUUAAAUC	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s604_TRINITY_DN3852_c1_g1_2356_TPlot.pdf
TRINITY_DN3852_c1_g1:3400	si_s203	TRINITY_DN3852_c1_g1	3389	3412	3400	-35.50	-24.04	0.677183098591549	12	1-4,3412-3409;6-17,3404-3393;19-20,3391-3390	5-5,3408-3405[AILt];18-18,3392-3392[SIL];21-21,3389-3389[UP3]	.((.((((((((((((....((((&))))---.)))))))))))).)).	AGAGGCAACUGGUGCAAAAAUCCA&UGGA---AUGUACCAGUUGUGUUC	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN3852_c1_g1_3400_TPlot.pdf
TRINITY_DN3852_c1_g1:3404	si_s199	TRINITY_DN3852_c1_g1	3393	3416	3404	-31.20	-23.94	0.767307692307692	13.5	3-8,3414-3409;10-21,3404-3393	1-2,3416-3415[UP5];9-9,3408-3405[AILt]	((((((((((((....((((((..&..))))))---.))))))))))))	GCAACUGGUGCAAAAAUCCAGAUU&AUUUUGGA---AUGUACCAGUUGU	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN3852_c1_g1_3404_TPlot.pdf
TRINITY_DN3852_c1_g1:3405	si_s198	TRINITY_DN3852_c1_g1	3394	3417	3405	-30.80	-22.34	0.725324675324675	14.5	4-9,3414-3409;11-21,3404-3394	1-3,3417-3415[UP5];10-10,3408-3405[AILt]	(((((((((((....((((((...&...))))))---.)))))))))))	CAACUGGUGCAAAAAUCCAGAUUU&UAUUUUGGA---AUGUACCAGUUG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN3852_c1_g1_3405_TPlot.pdf
TRINITY_DN3852_c1_g1:3409	si_s197	TRINITY_DN3852_c1_g1	3395	3418	3409	-29.20	-19.24	0.658904109589041	16.5	5-10,3414-3409;12-21,3404-3395	1-4,3418-3415[UP5];11-11,3408-3405[AILt]	((((((((((....((((((....&....))))))---.))))))))))	AACUGGUGCAAAAAUCCAGAUUUC&UUAUUUUGGA---AUGUACCAGUU	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN3852_c1_g1_3409_TPlot.pdf
TRINITY_DN3852_c1_g1:3441	si_s312	TRINITY_DN3852_c1_g1	3430	3450	3441	-29.00	-21.10	0.727586206896552	12.5	5-20,3446-3431	1-4,3450-3447[UP5];21-21,3430-3430[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGACGGGAAGGAUGGAGGCCG&AAAAUUCUGUCCUUCUUGUUA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN3852_c1_g1_3441_TPlot.pdf
TRINITY_DN3852_c1_g1:3448	si_a308	TRINITY_DN3852_c1_g1	3436	3457	3448	-32.70	-22.90	0.700305810397553	10	1-10,3457-3448;12-18,3445-3439	11-11,3447-3446[AILt];19-21,3438-3436[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	GAAGGAUGGAGGCCGAGCGGAU&AUUCGCUUGG-AUUUAUCCAUG	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN3852_c1_g1_3448_TPlot.pdf
TRINITY_DN3852_c1_g1:3449	si_a307	TRINITY_DN3852_c1_g1	3437	3458	3449	-33.00	-24.50	0.742424242424242	9.5	1-11,3458-3448;13-19,3445-3439	12-12,3447-3446[AILt];20-21,3438-3437[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	AAGGAUGGAGGCCGAGCGGAUU&GAUUCGCUUGG-AUUUAUCCAU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN3852_c1_g1_3449_TPlot.pdf
TRINITY_DN3852_c1_g1:3535	si_a70	TRINITY_DN3852_c1_g1	3521	3544	3535	-23.90	-16.30	0.682008368200837	12	1-11,3544-3534;12-18,3530-3524	x-x,3533-3531[BULt];19-21,3523-3521[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	UCAGGAAGACCCCAGUUUGAGAGA&UCUUUCAAAUU---GUUUUUCAUU	2	0.999983129591032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3852_c1_g1_3535_TPlot.pdf
TRINITY_DN3852_c1_g1:3581	si_s309	TRINITY_DN3852_c1_g1	3571	3591	3581	-33.80	-23.90	0.707100591715976	6.5	1-3,3591-3589;4-10,3587-3581;12-21,3580-3571	x-x,3588-3588[BULt];11-11,x-x[BULq]	((((((((((-(((((((.(((&)))-))))))).))))))))))	CGGGGGGGGC-GAAUUUUGCGC&GCG-AAAAUUCUGUCCUUCUUG	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN3852_c1_g1_3581_TPlot.pdf
TRINITY_DN3852_c1_g1:3582	si_s308	TRINITY_DN3852_c1_g1	3572	3592	3582	-32.80	-22.50	0.685975609756098	6.5	1-4,3592-3589;5-11,3587-3581;13-21,3580-3572	x-x,3588-3588[BULt];12-12,x-x[BULq]	(((((((((-(((((((.((((&))))-))))))).)))))))))	GGGGGGGGC-GAAUUUUGCGCA&UGCG-AAAAUUCUGUCCUUCUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN3852_c1_g1_3582_TPlot.pdf
TRINITY_DN3852_c1_g1:3583	si_s307	TRINITY_DN3852_c1_g1	3573	3593	3583	-32.90	-22.50	0.683890577507599	5.5	1-5,3593-3589;6-12,3587-3581;14-21,3580-3573	x-x,3588-3588[BULt];13-13,x-x[BULq]	((((((((-(((((((.(((((&)))))-))))))).))))))))	GGGGGGGC-GAAUUUUGCGCAG&UUGCG-AAAAUUCUGUCCUUCU	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN3852_c1_g1_3583_TPlot.pdf
TRINITY_DN3852_c1_g1:3584	si_s306	TRINITY_DN3852_c1_g1	3574	3594	3584	-32.30	-21.20	0.656346749226006	6.5	2-6,3593-3589;7-13,3587-3581;15-21,3580-3574	1-1,3594-3594[UP5];x-x,3588-3588[BULt];14-14,x-x[BULq]	(((((((-(((((((.(((((.&.)))))-))))))).)))))))	GGGGGGC-GAAUUUUGCGCAGC&AUUGCG-AAAAUUCUGUCCUUC	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN3852_c1_g1_3584_TPlot.pdf
TRINITY_DN3852_c1_g1:3847	si_s617	TRINITY_DN3852_c1_g1	3836	3856	3847	-28.30	-18.40	0.65017667844523	15.5	8-20,3849-3837	1-7,3856-3850[UP5];21-21,3836-3836[UP3]	.(((((((((((((.......&.......))))))))))))).	CAGAGAUCGUUUGGUCACUGU&UUUAAAUCCAAGCGAUCUUUU	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN3852_c1_g1_3847_TPlot.pdf
TRINITY_DN3852_c1_g1:428	si_a582	TRINITY_DN3852_c1_g1	415	437	428	-32.80	-22.30	0.679878048780488	8	1-10,437-428;11-16,426-421;17-19,419-417	x-x,427-427[BULt];x-x,420-420[BULt];20-21,416-415[UP3]	..(((.((((((.((((((((((&))))))))))-))))))-)))..	GGGUCUCUUCUUCGUUGCGGACA&UGUUUGUAAC-AAGAAG-GACAG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN3852_c1_g1_428_TPlot.pdf
TRINITY_DN3852_c1_g1:4333	si_a490	TRINITY_DN3852_c1_g1	4321	4342	4333	-28.10	-18.60	0.661921708185053	9	2-11,4341-4332;12-12,4330-4330;14-20,4328-4322	1-1,4342-4342[UP5];x-x,4331-4331[BULt];13-13,4329-4329[SIL];21-21,4321-4321[UP3]	.(((((((.(.((((((((((.&.))))))))))-).))))))).	UCGAAGGAGGCACGUGUUCUGG&AUAGAAUAUGU-CGUUUUUCGU	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN3852_c1_g1_4333_TPlot.pdf
TRINITY_DN3852_c1_g1:4334	si_a489	TRINITY_DN3852_c1_g1	4322	4343	4334	-27.70	-18.40	0.664259927797834	10	3-12,4341-4332;13-13,4330-4330;15-21,4328-4322	1-2,4343-4342[UP5];x-x,4331-4331[BULt];14-14,4329-4329[SIL]	(((((((.(.((((((((((..&..))))))))))-).)))))))	CGAAGGAGGCACGUGUUCUGGU&UAUAGAAUAUGU-CGUUUUUCG	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN3852_c1_g1_4334_TPlot.pdf
TRINITY_DN3852_c1_g1:6643	si_s378	TRINITY_DN3852_c1_g1	6632	6651	6643	-43.80	-31.40	0.71689497716895	6.5	2-5,6650-6647;7-17,6646-6636;19-20,6634-6633	1-1,6651-6651[UP5];6-6,x-x[BULq];18-18,6635-6635[SIL];21-21,6632-6632[UP3]	.((.(((((((((((-((((.&.)))).))))))))))).)).	CGUUGGGCGGACACG-GGGCU&CGCUCGCGUGUCCGCCUUACA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN3852_c1_g1_6643_TPlot.pdf
TRINITY_DN3853_c0_g1:311	si_a502	TRINITY_DN3853_c0_g1	301	320	311	-32.10	-21.10	0.657320872274143	10	1-3,320-318;5-11,316-310;13-18,309-304	4-4,317-317[SIL];12-12,x-x[BULq];19-21,303-301[UP3]	...((((((-(((((((.(((&))).))))))).))))))...	AGACCAAGG-GGGCGAAUGAC&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999999967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3853_c0_g1_311_TPlot.pdf
TRINITY_DN3853_c0_g1:3332	si_a413	TRINITY_DN3853_c0_g1	3321	3341	3332	-18.40	-12.00	0.652173913043478	4	1-5,3341-3337;7-16,3335-3326;18-21,3324-3321	6-6,3336-3336[SIL];17-17,3325-3325[SIL]	((((.((((((((((.(((((&))))).)))))))))).))))	GUAUAUGUUUAAAUACAAACA&UGUUUAUAUUUAAAUAAAUAU	2	0.999799192897878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN3853_c0_g1_3332_TPlot.pdf
TRINITY_DN3853_c0_g1:3414	si_a551	TRINITY_DN3853_c0_g1	3405	3423	3414	-31.60	-21.00	0.664556962025316	6	3-12,3421-3412;15-20,3411-3406	1-2,3423-3422[UP5];13-14,x-x[BULq];21-21,3405-3405[UP3]	.((((((--((((((((((..&..))))))))))..)))))).	AGGGAGA--AAGAAAUAGAAA&AAUCUAUUUCUUUAUCUCCCC	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN3853_c0_g1_3414_TPlot.pdf
TRINITY_DN3853_c0_g1:3415	si_a550	TRINITY_DN3853_c0_g1	3406	3424	3415	-30.90	-21.00	0.679611650485437	7	4-13,3421-3412;16-21,3411-3406	1-3,3424-3422[UP5];14-15,x-x[BULq]	((((((--((((((((((...&...))))))))))..))))))	GGGAGA--AAGAAAUAGAAAG&CAAUCUAUUUCUUUAUCUCCC	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN3853_c0_g1_3415_TPlot.pdf
TRINITY_DN3853_c0_g1:866	si_a494	TRINITY_DN3853_c0_g1	853	875	866	-29.50	-19.70	0.667796610169492	15.5	6-10,870-866;11-21,863-853	1-5,875-871[UP5];x-x,865-864[BULt]	(((((((((((..(((((.....&.....)))))--)))))))))))	GAAGAUGAAGAAGGCGACGAGGA&AAUAUGUCGU--UUUUCGUCUUC	4	0.999999999978083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN3853_c0_g1_866_TPlot.pdf
TRINITY_DN3855_c0_g1:2044	si_a788	TRINITY_DN3855_c0_g1	2030	2054	2044	-24.80	-16.70	0.673387096774194	6.5	1-7,2054-2048;8-14,2046-2040;15-21,2036-2030	x-x,2047-2047[BULt];x-x,2039-2037[BULt]	(((((((...(((((((.(((((((&)))))))-)))))))---)))))))	UUGGAAGGAGGUAGAAACAAUAGAG&UUCUAUU-UUUCUAU---UUUCCAA	2	0.999999813615724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3855_c0_g1_2044_TPlot.pdf
TRINITY_DN38575_c0_g1:102	si_a69	TRINITY_DN38575_c0_g1	91	111	102	-24.00	-17.50	0.729166666666667	8.5	2-4,110-108;6-19,106-93	1-1,111-111[UP5];5-5,107-107[SIL];20-21,92-91[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AAGAAGGGCAGUUUGGUAGAU&UUCUUUCAAAUUGUUUUUCAU	2	0.992299301143276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN38575_c0_g1_102_TPlot.pdf
TRINITY_DN38575_c0_g1:99	si_a72	TRINITY_DN38575_c0_g1	88	108	99	-21.90	-14.40	0.657534246575343	12.5	3-16,106-93	1-2,108-107[UP5];17-21,92-88[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUGAAGAAGGGCAGUUUGGUA&UUUCAAAUUGUUUUUCAUUAU	2	0.999999997667907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN38575_c0_g1_99_TPlot.pdf
TRINITY_DN3859_c0_g1:1020	si_a636	TRINITY_DN3859_c0_g1	1009	1029	1020	-26.30	-19.80	0.752851711026616	6	1-18,1029-1012	19-21,1011-1009[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACGUAUUUAAGGAAAUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN3859_c0_g1_1020_TPlot.pdf
TRINITY_DN3859_c0_g1:1022	si_a634	TRINITY_DN3859_c0_g1	1011	1031	1022	-26.40	-19.80	0.75	6.5	3-20,1029-1012	1-2,1031-1030[UP5];21-21,1011-1011[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUAUUUAAGGAAAUCGACAAU&UAUGUCGAUUUUUUUGAGUAA	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN3859_c0_g1_1022_TPlot.pdf
TRINITY_DN3859_c0_g1:1023	si_a633	TRINITY_DN3859_c0_g1	1012	1032	1023	-26.40	-19.60	0.742424242424243	7	4-21,1029-1012	1-3,1032-1030[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAUUUAAGGAAAUCGACAAUA&UUAUGUCGAUUUUUUUGAGUA	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3859_c0_g1_1023_TPlot.pdf
TRINITY_DN385_c0_g1:2447	si_s820	TRINITY_DN385_c0_g1	2436	2456	2447	-22.10	-14.50	0.656108597285068	5	1-8,2456-2449;10-12,2447-2445;14-20,2443-2437	9-9,2448-2448[SIL];13-13,2444-2444[SIL];21-21,2436-2436[UP3]	.(((((((.(((.((((((((&)))))))).))).))))))).	CGUUUUUCUUUGGUAAGAAAA&UUUUCUUAAUAAUGAAAAACA	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN385_c0_g1_2447_TPlot.pdf
TRINITY_DN3861_c0_g1:1302	si_a870	TRINITY_DN3861_c0_g1	1291	1311	1302	-24.80	-16.20	0.653225806451613	16	8-18,1304-1294	1-7,1311-1305[UP5];19-21,1293-1291[UP3]	...(((((((((((.......&.......)))))))))))...	GGAGCAACUAAAUCAAUGGUU&UAUUAAAGAUUUAGUUGCAAU	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN3861_c0_g1_1302_TPlot.pdf
TRINITY_DN3861_c0_g1:1322	si_a410	TRINITY_DN3861_c0_g1	1311	1331	1322	-17.80	-12.60	0.707865168539326	7	1-9,1331-1323;11-18,1321-1314	10-10,1322-1322[SIL];19-21,1313-1311[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAGAUUUAAGUUUAAACAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3861_c0_g1_1322_TPlot.pdf
TRINITY_DN3861_c0_g1:1957	si_s97	TRINITY_DN3861_c0_g1	1945	1966	1957	-36.30	-23.70	0.652892561983471	8.5	1-12,1966-1955;13-17,1953-1949;19-19,1947-1947	x-x,1954-1954[BULt];18-18,1948-1948[SIL];20-21,1946-1945[UP3]	..(.(((((.((((((((((((&))))))))))))-))))).)..	AGUGGAUCUGGAGGCGAAGGAG&CUUCUUCGCUUC-GGAUUGGAA	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN3861_c0_g1_1957_TPlot.pdf
TRINITY_DN3861_c0_g1:1959	si_s95	TRINITY_DN3861_c0_g1	1947	1968	1959	-36.30	-26.00	0.716253443526171	5.5	1-14,1968-1955;15-19,1953-1949;21-21,1947-1947	x-x,1954-1954[BULt];20-20,1948-1948[SIL]	(.(((((.((((((((((((((&))))))))))))))-))))).)	UGGAUCUGGAGGCGAAGGAGAA&UUCUUCUUCGCUUC-GGAUUGG	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN3861_c0_g1_1959_TPlot.pdf
TRINITY_DN3861_c0_g1:1960	si_s94	TRINITY_DN3861_c0_g1	1948	1969	1960	-35.50	-27.80	0.783098591549296	4.5	1-15,1969-1955;16-20,1953-1949	x-x,1954-1954[BULt];21-21,1948-1948[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	GGAUCUGGAGGCGAAGGAGAAG&CUUCUUCUUCGCUUC-GGAUUG	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN3861_c0_g1_1960_TPlot.pdf
TRINITY_DN3861_c0_g1:1963	si_s91	TRINITY_DN3861_c0_g1	1951	1972	1963	-34.70	-25.20	0.726224783861671	8	4-18,1969-1955;19-21,1953-1951	1-3,1972-1970[UP5];x-x,1954-1954[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	UCUGGAGGCGAAGGAGAAGCAA&UUUCUUCUUCUUCGCUUC-GGA	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3861_c0_g1_1963_TPlot.pdf
TRINITY_DN3861_c0_g1:1964	si_s90	TRINITY_DN3861_c0_g1	1953	1973	1964	-35.30	-24.60	0.696883852691218	10	5-19,1969-1955;21-21,1953-1953	1-4,1973-1970[UP5];20-20,1954-1954[SIL]	(.(((((((((((((((....&....))))))))))))))).)	UGGAGGCGAAGGAGAAGCAAC&CUUUCUUCUUCUUCGCUUCGG	4	0.999999846289191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3861_c0_g1_1964_TPlot.pdf
TRINITY_DN3861_c0_g1:1965	si_s89	TRINITY_DN3861_c0_g1	1954	1979	1965	-35.30	-24.60	0.696883852691218	14.5	2-5,1978-1975;6-20,1969-1955	1-1,1979-1979[UP5];x-x,1974-1970[BULt];21-21,1954-1954[UP3]	.(((((((((((((((.....((((.&.))))-----))))))))))))))).	GGAGGCGAAGGAGAAGCAACUGAAGC&CCUUU-----CUUCUUCUUCGCUUCG	3	0.999999924378671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN3861_c0_g1_1965_TPlot.pdf
TRINITY_DN3861_c0_g1:1967	si_s87	TRINITY_DN3861_c0_g1	1956	1984	1967	-32.90	-22.00	0.668693009118541	18	2-5,1983-1980;6-7,1972-1971;8-21,1969-1956	1-1,1984-1984[UP5];x-x,1979-1973[BULt];x-x,1970-1970[BULt]	((((((((((((((.((.......((((.&.))))-------))-))))))))))))))	AGGCGAAGGAGAAGCAACUGAAGCAGGAC&UUCCU-------UU-CUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3861_c0_g1_1967_TPlot.pdf
TRINITY_DN3863_c0_g1:1302	si_a606	TRINITY_DN3863_c0_g1	1291	1311	1302	-32.60	-22.50	0.690184049079755	9	4-16,1308-1296;18-19,1294-1293	1-3,1311-1309[UP5];17-17,1295-1295[SIL];20-21,1292-1291[UP3]	..((.(((((((((((((...&...))))))))))))).))..	CUGUGGAUUGGAAUUGUGUUA&UUUCGCAAUUCCAAUCGACUA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN3863_c0_g1_1302_TPlot.pdf
TRINITY_DN3864_c0_g1:1172	si_a308	TRINITY_DN3864_c0_g1	1161	1181	1172	-32.70	-21.70	0.663608562691131	8	3-14,1179-1168;17-18,1165-1164	1-2,1181-1180[UP5];15-16,1167-1166[SIL];19-21,1163-1161[UP3]	...((..((((((((((((..&..))))))))))))..))...	AGCGGUCAAAUCCAAGCGACC&AUUCGCUUGGAUUUAUCCAUG	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN3864_c0_g1_1172_TPlot.pdf
TRINITY_DN3864_c0_g1:1173	si_a286	TRINITY_DN3864_c0_g1	1162	1182	1173	-28.30	-19.30	0.681978798586572	8	1-2,1182-1181;4-15,1179-1168	3-3,1180-1180[SIL];16-21,1167-1162[UP3]	......((((((((((((.((&)).))))))))))))......	GCGGUCAAAUCCAAGCGACCU&AGAUCGCUUGGAUUUAAAAAA	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN3864_c0_g1_1173_TPlot.pdf
TRINITY_DN3864_c0_g1:1174	si_a285	TRINITY_DN3864_c0_g1	1163	1183	1174	-28.30	-19.60	0.692579505300353	8	2-3,1182-1181;5-16,1179-1168	1-1,1183-1183[UP5];4-4,1180-1180[SIL];17-21,1167-1163[UP3]	.....((((((((((((.((.&.)).)))))))))))).....	CGGUCAAAUCCAAGCGACCUG&AAGAUCGCUUGGAUUUAAAAA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN3864_c0_g1_1174_TPlot.pdf
TRINITY_DN3864_c0_g1:1175	si_a284	TRINITY_DN3864_c0_g1	1164	1184	1175	-28.30	-19.60	0.692579505300353	9	3-4,1182-1181;6-17,1179-1168	1-2,1184-1183[UP5];5-5,1180-1180[SIL];18-21,1167-1164[UP3]	....((((((((((((.((..&..)).))))))))))))....	GGUCAAAUCCAAGCGACCUGA&AAAGAUCGCUUGGAUUUAAAA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN3864_c0_g1_1175_TPlot.pdf
TRINITY_DN3864_c0_g1:1176	si_a283	TRINITY_DN3864_c0_g1	1165	1185	1176	-28.30	-19.60	0.692579505300353	10	4-5,1182-1181;7-18,1179-1168	1-3,1185-1183[UP5];6-6,1180-1180[SIL];19-21,1167-1165[UP3]	...((((((((((((.((...&...)).))))))))))))...	GUCAAAUCCAAGCGACCUGAC&AAAAGAUCGCUUGGAUUUAAA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN3864_c0_g1_1176_TPlot.pdf
TRINITY_DN3864_c0_g1:1179	si_a280	TRINITY_DN3864_c0_g1	1168	1190	1179	-32.10	-21.88	0.681619937694704	10	1-4,1190-1187;7-8,1182-1181;10-21,1179-1168	5-6,1186-1183[AILt];9-9,1180-1180[SIL]	((((((((((((.((....((((&))))--..)).))))))))))))	AAAUCCAAGCGACCUGACAUCGU&ACGA--AAAGAUCGCUUGGAUUU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN3864_c0_g1_1179_TPlot.pdf
TRINITY_DN3864_c0_g1:141	si_a702	TRINITY_DN3864_c0_g1	130	150	141	-30.80	-20.50	0.665584415584416	10	1-1,150-150;4-10,147-141;12-17,139-134	2-3,149-148[SIL];11-11,140-140[SIL];18-21,133-130[UP3]	....((((((.(((((((..(&)..))))))).))))))....	GGGAUUGGAAAGUACCAGGGG&CAACUGGUACAUUCCAAAAUA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN3864_c0_g1_141_TPlot.pdf
TRINITY_DN3864_c0_g1:142	si_a701	TRINITY_DN3864_c0_g1	131	151	142	-31.20	-20.50	0.657051282051282	10	2-2,150-150;5-11,147-141;13-18,139-134	1-1,151-151[UP5];3-4,149-148[SIL];12-12,140-140[SIL];19-21,133-131[UP3]	...((((((.(((((((..(.&.)..))))))).))))))...	GGAUUGGAAAGUACCAGGGGA&ACAACUGGUACAUUCCAAAAU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN3864_c0_g1_142_TPlot.pdf
TRINITY_DN3864_c0_g1:143	si_a790	TRINITY_DN3864_c0_g1	132	154	143	-25.80	-17.30	0.670542635658915	12	1-8,154-147;10-21,143-132	9-9,146-144[AILt]	((((((((((((...((((((((&))))))))--.))))))))))))	GAUUGGAAAGUACCAGGGGAUGG&CUAUUUUU--CUAUUUUCCAAUC	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN3864_c0_g1_143_TPlot.pdf
TRINITY_DN3864_c0_g1:929	si_s470	TRINITY_DN3864_c0_g1	918	939	929	-33.70	-23.00	0.682492581602374	12	1-7,939-933;10-17,929-922	8-9,932-930[AILt];18-21,921-918[UP3]	....((((((((...(((((((&)))))))-..))))))))....	CGACGGGGUCCGGCCGGAUGUG&CAUAUCC-AACGGAUCCUAUAU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s470_TRINITY_DN3864_c0_g1_929_TPlot.pdf
TRINITY_DN3864_c0_g1:930	si_s469	TRINITY_DN3864_c0_g1	919	940	930	-34.50	-23.00	0.666666666666667	12	2-8,939-933;11-18,929-922	1-1,940-940[UP5];9-10,932-930[AILt];19-21,921-919[UP3]	...((((((((...(((((((.&.)))))))-..))))))))...	GACGGGGUCCGGCCGGAUGUGC&UCAUAUCC-AACGGAUCCUAUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s469_TRINITY_DN3864_c0_g1_930_TPlot.pdf
TRINITY_DN38653_c0_g1:516	si_a233	TRINITY_DN38653_c0_g1	505	525	516	-28.90	-20.48	0.708650519031142	7	1-10,525-516;14-21,512-505	11-13,515-513[SIL]	((((((((...((((((((((&))))))))))...))))))))	GGAUCGAAAGUGUUGUAGAAA&UUUCUAUAAUCAAUUCGAUCC	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN38653_c0_g1_516_TPlot.pdf
TRINITY_DN38658_c0_g1:273	si_s70	TRINITY_DN38658_c0_g1	260	282	273	-25.80	-16.80	0.651162790697674	8.5	2-14,281-269;15-18,266-263;20-21,261-260	1-1,282-282[UP5];x-x,268-267[BULt];19-19,262-262[SIL]	((.((((..(((((((((((((.&.)))))))))))))--)))).))	GGCAAGAAUGAGGAGGUAGAAGA&ACUUCUAUUUUUUU--UCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN38658_c0_g1_273_TPlot.pdf
TRINITY_DN3865_c1_g1:1702	si_s72	TRINITY_DN3865_c1_g1	1691	1711	1702	-24.10	-15.90	0.659751037344398	6.5	1-4,1711-1708;6-10,1706-1702;12-21,1700-1691	5-5,1707-1707[SIL];11-11,1701-1701[SIL]	((((((((((.(((((.((((&)))).))))).))))))))))	GGGGGAAGAACAAAAGAAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3865_c1_g1_1702_TPlot.pdf
TRINITY_DN3865_c1_g1:1872	si_s84	TRINITY_DN3865_c1_g1	1860	1881	1872	-32.30	-21.82	0.675541795665635	5.5	1-14,1881-1868;18-21,1863-1860	15-17,1867-1864[AILt]	((((....((((((((((((((&))))))))))))))-...))))	UGAACCCUGAAGAAAGGAGAGA&UCUUUCCUUUCUUC-UUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3865_c1_g1_1872_TPlot.pdf
TRINITY_DN3865_c1_g1:1873	si_s83	TRINITY_DN3865_c1_g1	1862	1882	1873	-30.90	-22.10	0.715210355987055	7	1-15,1882-1868	16-21,1867-1862[UP3]	......(((((((((((((((&)))))))))))))))......	AACCCUGAAGAAAGGAGAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999992811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3865_c1_g1_1873_TPlot.pdf
TRINITY_DN3865_c1_g1:1878	si_s78	TRINITY_DN3865_c1_g1	1867	1887	1878	-26.20	-23.90	0.912213740458015	8	4-20,1884-1868	1-3,1887-1885[UP5];21-21,1867-1867[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGAAGAAAGGAGAGAAGACGG&UUUUUUUCUUUCCUUUCUUCU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3865_c1_g1_1878_TPlot.pdf
TRINITY_DN3865_c1_g1:1956	si_s73	TRINITY_DN3865_c1_g1	1945	1966	1956	-24.00	-17.00	0.708333333333333	9.5	1-3,1966-1964;5-8,1961-1958;10-21,1956-1945	4-4,1963-1962[AILt];9-9,1957-1957[SIL]	((((((((((((.((((..(((&)))-.)))).))))))))))))	AAAGGGAAGAGAUGAGAGAAGA&UCU-AUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3865_c1_g1_1956_TPlot.pdf
TRINITY_DN3865_c1_g1:2025	si_s73	TRINITY_DN3865_c1_g1	2014	2034	2025	-24.00	-15.80	0.658333333333333	11.5	5-19,2030-2016	1-4,2034-2031[UP5];20-21,2015-2014[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGGGAAAGGGAAAAAAGAAA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3865_c1_g1_2025_TPlot.pdf
TRINITY_DN3865_c1_g1:3795	si_s74	TRINITY_DN3865_c1_g1	3785	3804	3795	-25.00	-17.00	0.68	6	1-11,3804-3794;15-21,3791-3785	12-14,3793-3792[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	GAAAGGAUC-AAAGAAAAUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN3865_c1_g1_3795_TPlot.pdf
TRINITY_DN3865_c1_g1:3798	si_s75	TRINITY_DN3865_c1_g1	3784	3807	3798	-24.00	-15.90	0.6625	8	1-5,3807-3803;7-13,3801-3795;14-20,3791-3785	6-6,3802-3802[SIL];x-x,3794-3792[BULt];21-21,3784-3784[UP3]	.(((((((...(((((((.(((((&))))).)))))))---))))))).	CGAAAGGAUCAAAGAAAAUGGAUA&UAUUUUUUUUCUU---UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3865_c1_g1_3798_TPlot.pdf
TRINITY_DN3865_c1_g1:3872	si_s82	TRINITY_DN3865_c1_g1	3861	3885	3872	-28.90	-23.20	0.802768166089965	11	1-9,3885-3877;10-21,3872-3861	x-x,3876-3873[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	AAGAAGAAGAGAAACCGGGAGGAAA&UUUCUUUCC----UUUCUUCUUCUU	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3865_c1_g1_3872_TPlot.pdf
TRINITY_DN3865_c1_g1:3880	si_s78	TRINITY_DN3865_c1_g1	3865	3889	3880	-26.20	-17.10	0.652671755725191	13.5	5-13,3885-3877;14-21,3872-3865	1-4,3889-3886[UP5];x-x,3876-3873[BULt]	((((((((....(((((((((....&....)))))))))----))))))))	AGAAGAGAAACCGGGAGGAAAUAUG&UUUUUUUCUUUCC----UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3865_c1_g1_3880_TPlot.pdf
TRINITY_DN3866_c0_g2:680	si_s883	TRINITY_DN3866_c0_g2	669	689	680	-24.30	-16.60	0.683127572016461	13.5	8-21,682-669	1-7,689-683[UP5]	((((((((((((((.......&.......))))))))))))))	AAGGCCUAUUUAUUGGACGGA&AACUAAAAAUAAAUAGGCUUU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN3866_c0_g2_680_TPlot.pdf
TRINITY_DN3866_c0_g2:818	si_a17	TRINITY_DN3866_c0_g2	807	827	818	-24.30	-16.20	0.666666666666667	7.5	2-12,826-816;14-17,814-811	1-1,827-827[UP5];13-13,815-815[SIL];18-21,810-807[UP3]	....((((.(((((((((((.&.))))))))))).))))....	AUGAGAAAUUAGAUAGGCUUA&AAAGCCUAUUUAUUUUUAGUU	4	0.999999959821998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN3866_c0_g2_818_TPlot.pdf
TRINITY_DN38670_c0_g1:31	si_a188	TRINITY_DN38670_c0_g1	17	39	31	-32.00	-22.50	0.703125	7.5	1-4,39-36;6-15,35-26;16-20,22-18	5-5,x-x[BULq];x-x,25-23[BULt];21-21,17-17[UP3]	.(((((...((((((((((-((((&)))).))))))))))---))))).	GGGUGAAAUACAGGGAGAG-UAUU&AAUAUCUUUCCCUGU---UCACUA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN38670_c0_g1_31_TPlot.pdf
TRINITY_DN3868_c0_g1:297	si_a67	TRINITY_DN3868_c0_g1	285	306	297	-27.20	-18.50	0.680147058823529	8.5	1-11,306-296;13-17,293-289;19-21,287-285	12-12,295-294[AILt];18-18,288-288[SIL]	(((.(((((..(((((((((((&)))))))))))-.))))).)))	GGACAGCGAAGUUGGAAGGAGC&GCUUCUUUCAA-AUUGUUUUUC	3	0.999999978003951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3868_c0_g1_297_TPlot.pdf
TRINITY_DN3868_c0_g1:303	si_s80	TRINITY_DN3868_c0_g1	292	312	303	-28.20	-18.60	0.659574468085106	9.5	3-6,310-307;8-15,305-298;18-21,295-292	1-2,312-311[UP5];7-7,306-306[SIL];16-17,297-296[SIL]	((((..((((((((.((((..&..)))).))))))))..))))	GAAGUUGGAAGGAGCGAGACA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3868_c0_g1_303_TPlot.pdf
TRINITY_DN3868_c0_g1:304	si_a60	TRINITY_DN3868_c0_g1	293	313	304	-32.20	-21.30	0.661490683229814	11.5	5-18,309-296	1-4,313-310[UP5];19-21,295-293[UP3]	...((((((((((((((....&....))))))))))))))...	AAGUUGGAAGGAGCGAGACAA&UCGACUCGCUUCUUUCAAAUU	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN3868_c0_g1_304_TPlot.pdf
TRINITY_DN3871_c0_g1:1177	si_a66	TRINITY_DN3871_c0_g1	1166	1186	1177	-26.70	-18.90	0.707865168539326	10	1-10,1186-1177;13-15,1174-1172;17-20,1170-1167	11-12,1176-1175[SIL];16-16,1171-1171[SIL];21-21,1166-1166[UP3]	.((((.(((..((((((((((&))))))))))..))).)))).	CGAGAGAAUGAGAGGGAGGCG&CGCUUCUUUCAAAUUGUUUUU	2	0.998565120328725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN3871_c0_g1_1177_TPlot.pdf
TRINITY_DN3871_c0_g1:1178	si_a65	TRINITY_DN3871_c0_g1	1167	1187	1178	-27.70	-19.10	0.689530685920578	8.5	1-11,1187-1177;14-16,1174-1172;18-21,1170-1167	12-13,1176-1175[SIL];17-17,1171-1171[SIL]	((((.(((..(((((((((((&)))))))))))..))).))))	GAGAGAAUGAGAGGGAGGCGG&UCGCUUCUUUCAAAUUGUUUU	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN3871_c0_g1_1178_TPlot.pdf
TRINITY_DN3871_c0_g1:1188	si_a497	TRINITY_DN3871_c0_g1	1177	1197	1188	-32.00	-20.90	0.653125	9.5	1-4,1197-1194;6-9,1192-1189;11-21,1187-1177	5-5,1193-1193[SIL];10-10,1188-1188[SIL]	(((((((((((.((((.((((&)))).)))).)))))))))))	GAGGGAGGCGGCGAAUCGCAU&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3871_c0_g1_1188_TPlot.pdf
TRINITY_DN3871_c0_g1:196	si_s99	TRINITY_DN3871_c0_g1	184	205	196	-34.60	-23.50	0.679190751445087	7	1-11,205-195;12-12,193-193;14-17,191-188	x-x,194-194[BULt];13-13,192-192[SIL];18-21,187-184[UP3]	....((((.(.(((((((((((&)))))))))))-).))))....	GCCGCCAACCUCGAAGCGAAGA&UCUUCGCUUCG-GAUUGGAAAA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN3871_c0_g1_196_TPlot.pdf
TRINITY_DN3871_c0_g1:2507	si_s91	TRINITY_DN3871_c0_g1	2496	2517	2507	-34.70	-24.50	0.706051873198847	5	1-4,2517-2514;5-12,2512-2505;14-20,2503-2497	x-x,2513-2513[BULt];13-13,2504-2504[SIL];21-21,2496-2496[UP3]	.(((((((.((((((((.((((&))))-)))))))).))))))).	GCCGAAGCCAGGAAGAAUGAAA&UUUC-UUCUUCUUCGCUUCGGA	4	0.999993940316308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3871_c0_g1_2507_TPlot.pdf
TRINITY_DN3874_c0_g1:1200	si_a755	TRINITY_DN3874_c0_g1	1189	1209	1200	-34.90	-23.30	0.667621776504298	8	1-5,1209-1205;7-11,1203-1199;14-20,1196-1190	6-6,1204-1204[SIL];12-13,1198-1197[SIL];21-21,1189-1189[UP3]	.(((((((..(((((.(((((&))))).)))))..))))))).	CCGAGAACAAGAAGGUGGUUC&GAACCUCCUUUGGGUUUUUGA	3	0.999837544122648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN3874_c0_g1_1200_TPlot.pdf
TRINITY_DN3874_c1_g1:164	si_s88	TRINITY_DN3874_c1_g1	149	173	164	-34.80	-25.50	0.732758620689655	8.5	1-11,173-163;12-19,159-152;20-21,150-149	x-x,162-160[BULt];x-x,151-151[BULt]	((.((((((((...(((((((((((&)))))))))))---))))))))-))	GACAGUGAAGAAAAAGAAGAAGGGA&UCCUUUCUUCU---UCUUCGCU-UC	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3874_c1_g1_164_TPlot.pdf
TRINITY_DN3874_c1_g1:166	si_s86	TRINITY_DN3874_c1_g1	152	175	166	-32.90	-27.00	0.820668693009119	5.5	1-13,175-163;14-21,159-152	x-x,162-160[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	AGUGAAGAAAAAGAAGAAGGGAGA&UUUCCUUUCUUCU---UCUUCGCU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3874_c1_g1_166_TPlot.pdf
TRINITY_DN3874_c1_g1:169	si_s83	TRINITY_DN3874_c1_g1	155	178	169	-30.90	-21.90	0.70873786407767	10	4-16,175-163;17-21,159-155	1-3,178-176[UP5];x-x,162-160[BULt]	(((((...(((((((((((((...&...)))))))))))))---)))))	GAAGAAAAAGAAGAAGGGAGAAGU&UUCUUUCCUUUCUUCU---UCUUC	4	0.999999999999869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3874_c1_g1_169_TPlot.pdf
TRINITY_DN3874_c1_g1:171	si_s69	TRINITY_DN3874_c1_g1	160	179	171	-23.40	-15.40	0.658119658119658	7.5	2-7,178-173;9-20,172-161	1-1,179-179[UP5];8-8,x-x[BULq];21-21,160-160[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AAAAGAAGAAGGG-AGAAGUA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3874_c1_g1_171_TPlot.pdf
TRINITY_DN3874_c1_g1:174	si_s78	TRINITY_DN3874_c1_g1	163	192	174	-26.20	-19.60	0.748091603053435	20.5	1-9,192-184;10-21,174-163	x-x,183-175[BULt]	((((((((((((.........(((((((((&)))))))))---------))))))))))))	AGAAGAAGGGAGAAGUACAAUAGAAAAAGA&UUUUUUUCU---------UUCCUUUCUUCU	3	0.999999999996568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3874_c1_g1_174_TPlot.pdf
TRINITY_DN3874_c1_g1:276	si_a80	TRINITY_DN3874_c1_g1	265	285	276	-22.10	-14.40	0.65158371040724	7	1-14,285-272	15-21,271-265[UP3]	.......((((((((((((((&)))))))))))))).......	GGAGAAAAAUAAUGAAAAACA&UGUUUUUCAUUAUUAAGAAAA	2	0.999979666833489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN3874_c1_g1_276_TPlot.pdf
TRINITY_DN3874_c1_g1:277	si_a79	TRINITY_DN3874_c1_g1	266	286	277	-22.20	-15.30	0.689189189189189	6	1-15,286-272	16-21,271-266[UP3]	......(((((((((((((((&)))))))))))))))......	GAGAAAAAUAAUGAAAAACAA&UUGUUUUUCAUUAUUAAGAAA	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN3874_c1_g1_277_TPlot.pdf
TRINITY_DN3874_c1_g1:279	si_a77	TRINITY_DN3874_c1_g1	268	288	279	-22.20	-15.30	0.689189189189189	7	3-17,286-272	1-2,288-287[UP5];18-21,271-268[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAAAAAUAAUGAAAAACAAGC&AAUUGUUUUUCAUUAUUAAGA	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN3874_c1_g1_279_TPlot.pdf
TRINITY_DN3874_c1_g1:280	si_a76	TRINITY_DN3874_c1_g1	269	289	280	-21.20	-15.30	0.721698113207547	8	4-18,286-272	1-3,289-287[UP5];19-21,271-269[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAAAUAAUGAAAAACAAGCA&AAAUUGUUUUUCAUUAUUAAG	2	0.990122750700536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3874_c1_g1_280_TPlot.pdf
TRINITY_DN3874_c1_g1:281	si_a75	TRINITY_DN3874_c1_g1	270	290	281	-21.30	-15.30	0.71830985915493	9	5-19,286-272	1-4,290-287[UP5];20-21,271-270[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAUAAUGAAAAACAAGCAA&CAAAUUGUUUUUCAUUAUUAA	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN3874_c1_g1_281_TPlot.pdf
TRINITY_DN3874_c1_g1:393	si_s77	TRINITY_DN3874_c1_g1	382	402	393	-25.50	-17.50	0.686274509803922	8.5	1-9,402-394;11-18,392-385	10-10,393-393[SIL];19-21,384-382[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAUGGAAGGAAUGAAGAAGGA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3874_c1_g1_393_TPlot.pdf
TRINITY_DN3874_c1_g1:394	si_s72	TRINITY_DN3874_c1_g1	383	403	394	-24.10	-16.00	0.663900414937759	9.5	1-4,403-400;6-10,398-394;12-19,392-385	5-5,399-399[SIL];11-11,393-393[SIL];20-21,384-383[UP3]	..((((((((.(((((.((((&)))).))))).))))))))..	AUGGAAGGAAUGAAGAAGGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3874_c1_g1_394_TPlot.pdf
TRINITY_DN3874_c1_g1:395	si_s75	TRINITY_DN3874_c1_g1	384	404	395	-24.00	-17.50	0.729166666666667	9.5	3-11,402-394;13-20,392-385	1-2,404-403[UP5];12-12,393-393[SIL];21-21,384-384[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	UGGAAGGAAUGAAGAAGGAAA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN3874_c1_g1_395_TPlot.pdf
TRINITY_DN3874_c1_g1:409	si_s69	TRINITY_DN3874_c1_g1	397	418	409	-23.40	-15.60	0.666666666666667	9.5	4-13,415-406;14-21,404-397	1-3,418-416[UP5];x-x,405-405[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	GAAGGAAAUAAGAAUGGAGAUG&AACUUCUAUUUUU-UUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN3874_c1_g1_409_TPlot.pdf
TRINITY_DN3874_c1_g1:65	si_s78	TRINITY_DN3874_c1_g1	56	74	65	-26.20	-17.40	0.66412213740458	7.5	4-13,71-62;16-21,61-56	1-3,74-72[UP5];14-15,x-x[BULq]	((((((--((((((((((...&...))))))))))..))))))	AGAGGA--GGAAAGAAAAUUG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3874_c1_g1_65_TPlot.pdf
TRINITY_DN3878_c0_g1:931	si_s12	TRINITY_DN3878_c0_g1	920	940	931	-22.80	-15.38	0.674561403508772	11	1-6,940-935;10-20,931-921	7-9,934-932[SIL];21-21,920-920[UP3]	.(((((((((((...((((((&))))))...))))))))))).	CAUCGAUGUGGUUGAGAUGAG&CUUAUUAUUACUAUAUUGAUU	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN3878_c0_g1_931_TPlot.pdf
TRINITY_DN38798_c0_g1:320	si_a245	TRINITY_DN38798_c0_g1	309	330	320	-37.20	-25.60	0.688172043010753	6	2-9,329-322;10-12,320-318;14-21,316-309	1-1,330-330[UP5];x-x,321-321[BULt];13-13,317-317[SIL]	((((((((.(((.((((((((.&.))))))))-))).))))))))	GAUAUAGUAGGGUGGGUCGAAA&AUUCGAUCC-CCCGAUUGUAUC	0	0.0266543707756521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a245_TRINITY_DN38798_c0_g1_320_TPlot.pdf
TRINITY_DN387_c0_g1:1340	si_s669	TRINITY_DN387_c0_g1	1332	1349	1340	-26.90	-17.70	0.657992565055762	7	1-12,1349-1338;16-20,1337-1333	13-15,x-x[BULq];21-21,1332-1332[UP3]	.(((((---((((((((((((&))))))))))))...))))).	CGUUUC---GGUCGAUUCGAU&AUCGAAUUGAUUAUAGAAACA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s669_TRINITY_DN387_c0_g1_1340_TPlot.pdf
TRINITY_DN387_c0_g1:1449	si_s606	TRINITY_DN387_c0_g1	1438	1457	1449	-28.20	-20.90	0.74113475177305	5	1-5,1457-1453;7-9,1452-1450;11-21,1448-1438	6-6,x-x[BULq];10-10,1449-1449[SIL]	(((((((((((.(((-(((((&))))).))).)))))))))))	UGGAUUUGGAACAGA-UCGCU&AGCGAAUCUUUUUUAAAUCCA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN387_c0_g1_1449_TPlot.pdf
TRINITY_DN387_c0_g1:1450	si_s605	TRINITY_DN387_c0_g1	1439	1458	1450	-27.50	-19.80	0.72	6	2-6,1457-1453;8-10,1452-1450;12-21,1448-1439	1-1,1458-1458[UP5];7-7,x-x[BULq];11-11,1449-1449[SIL]	((((((((((.(((-(((((.&.))))).))).))))))))))	GGAUUUGGAACAGA-UCGCUG&AAGCGAAUCUUUUUUAAAUCC	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN387_c0_g1_1450_TPlot.pdf
TRINITY_DN387_c0_g1:3074	si_a500	TRINITY_DN387_c0_g1	3063	3083	3074	-34.40	-24.10	0.700581395348837	9	1-11,3083-3073;13-20,3071-3064	12-12,3072-3072[SIL];21-21,3063-3063[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	ACCGGGGGGCACGGGAGGCGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN387_c0_g1_3074_TPlot.pdf
TRINITY_DN387_c0_g1:682	si_a487	TRINITY_DN387_c0_g1	671	691	682	-24.80	-16.40	0.661290322580645	15	7-21,685-671	1-6,691-686[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGACGACGUGUUUAUCGUU&UAUAUAGAAUAUGUCGUUUUU	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN387_c0_g1_682_TPlot.pdf
TRINITY_DN387_c0_g1:836	si_s89	TRINITY_DN387_c0_g1	825	846	836	-35.30	-25.70	0.728045325779037	7	1-4,846-843;5-17,841-829	x-x,842-842[BULt];18-21,828-825[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	AAGCGCGAAGAAGAAGAGGAGG&CCUU-UCUUCUUCUUCGCUUCG	2	0.994764405127733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN387_c0_g1_836_TPlot.pdf
TRINITY_DN387_c0_g1:837	si_s88	TRINITY_DN387_c0_g1	826	847	837	-34.80	-25.70	0.738505747126437	7	2-5,846-843;6-18,841-829	1-1,847-847[UP5];x-x,842-842[BULt];19-21,828-826[UP3]	...(((((((((((((.((((.&.))))-)))))))))))))...	AGCGCGAAGAAGAAGAGGAGGC&UCCUU-UCUUCUUCUUCGCUUC	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN387_c0_g1_837_TPlot.pdf
TRINITY_DN387_c0_g1:838	si_s87	TRINITY_DN387_c0_g1	827	848	838	-32.90	-25.70	0.781155015197568	8	3-6,846-843;7-19,841-829	1-2,848-847[UP5];x-x,842-842[BULt];20-21,828-827[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	GCGCGAAGAAGAAGAGGAGGCU&UUCCUU-UCUUCUUCUUCGCUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN387_c0_g1_838_TPlot.pdf
TRINITY_DN387_c0_g1:839	si_s86	TRINITY_DN387_c0_g1	828	849	839	-32.90	-25.70	0.781155015197568	9	4-7,846-843;8-20,841-829	1-3,849-847[UP5];x-x,842-842[BULt];21-21,828-828[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	CGCGAAGAAGAAGAGGAGGCUC&UUUCCUU-UCUUCUUCUUCGCU	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN387_c0_g1_839_TPlot.pdf
TRINITY_DN387_c0_g1:841	si_s84	TRINITY_DN387_c0_g1	830	851	841	-32.30	-22.00	0.681114551083591	12	6-9,846-843;10-21,841-830	1-5,851-847[UP5];x-x,842-842[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	CGAAGAAGAAGAGGAGGCUCUC&UCUUUCCUU-UCUUCUUCUUCG	2	0.99999999911665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN387_c0_g1_841_TPlot.pdf
TRINITY_DN3880_c0_g1:2339	si_s375	TRINITY_DN3880_c0_g1	2329	2348	2339	-44.10	-29.20	0.662131519274376	6.5	1-10,2348-2339;12-17,2338-2333	11-11,x-x[BULq];18-21,2332-2329[UP3]	....((((((-((((((((((&)))))))))).))))))....	UGUUUGGACA-GCGAGCGAUC&GAUCGCUCGCGUGUCCGCCUU	4	0.999903674439181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN3880_c0_g1_2339_TPlot.pdf
TRINITY_DN3880_c0_g1:2341	si_s373	TRINITY_DN3880_c0_g1	2331	2350	2341	-47.30	-31.70	0.670190274841438	4.5	2-12,2349-2339;14-19,2338-2333	1-1,2350-2350[UP5];13-13,x-x[BULq];20-21,2332-2331[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UUUGGACA-GCGAGCGAUCGA&CCGAUCGCUCGCGUGUCCGCC	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN3880_c0_g1_2341_TPlot.pdf
TRINITY_DN3880_c0_g1:2344	si_s370	TRINITY_DN3880_c0_g1	2334	2353	2344	-43.70	-31.50	0.720823798627002	5	1-2,2353-2352;5-15,2349-2339;17-21,2338-2334	3-4,2351-2350[SIL];16-16,x-x[BULq]	(((((-(((((((((((..((&))..))))))))))).)))))	GGACA-GCGAGCGAUCGAGUC&GAACCGAUCGCUCGCGUGUCC	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s370_TRINITY_DN3880_c0_g1_2344_TPlot.pdf
TRINITY_DN3881_c0_g2:1404	si_a20	TRINITY_DN3881_c0_g2	1394	1413	1404	-26.70	-17.40	0.651685393258427	6	2-13,1412-1401;15-21,1400-1394	1-1,1413-1413[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UGGAAUU-AAGGUAAAUGGGG&GCCUAUUUAUUUUUAGUUCUA	3	0.999999998176299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN3881_c0_g2_1404_TPlot.pdf
TRINITY_DN3881_c0_g2:2061	si_a502	TRINITY_DN3881_c0_g2	2045	2070	2061	-32.10	-22.70	0.707165109034268	16	1-7,2070-2064;9-11,2062-2060;12-19,2054-2047	8-8,2063-2063[SIL];x-x,2059-2055[BULt];20-21,2046-2045[UP3]	..((((((((.....(((.(((((((&))))))).)))-----))))))))..	UGUCCAAGGAAAAAUAGAGGGAAAGC&GUUUUUCGUCU-----UCCUUGGAAU	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3881_c0_g2_2061_TPlot.pdf
TRINITY_DN3881_c0_g2:2136	si_a784	TRINITY_DN3881_c0_g2	2125	2145	2136	-24.70	-17.30	0.700404858299595	9	1-11,2145-2135;13-16,2133-2130	12-12,2134-2134[SIL];17-21,2129-2125[UP3]	.....((((.(((((((((((&))))))))))).)))).....	GGUUAAGAACGAUAGGAGAGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999993844025442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3881_c0_g2_2136_TPlot.pdf
TRINITY_DN3881_c0_g2:315	si_a20	TRINITY_DN3881_c0_g2	304	326	315	-26.70	-17.98	0.673408239700375	9.5	1-4,326-323;7-17,318-308;19-21,306-304	5-6,322-319[AILt];18-18,307-307[SIL]	(((.(((((((((((....((((&))))--..))))))))))).)))	UAGUGCUAAAAAUAAGAAGAGGC&GCCU--AUUUAUUUUUAGUUCUA	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN3881_c0_g2_315_TPlot.pdf
TRINITY_DN3882_c0_g1:1662	si_a789	TRINITY_DN3882_c0_g1	1650	1671	1662	-24.80	-17.20	0.693548387096774	6	2-15,1670-1657;16-18,1655-1653	1-1,1671-1671[UP5];x-x,1656-1656[BULt];19-21,1652-1650[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	AGAGGACAAAUAGAAAAAUGGC&UCUAUUUUUCUAUUU-UCCAAU	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN3882_c0_g1_1662_TPlot.pdf
TRINITY_DN3882_c0_g1:1663	si_a788	TRINITY_DN3882_c0_g1	1651	1672	1663	-24.80	-17.20	0.693548387096774	7	3-16,1670-1657;17-19,1655-1653	1-2,1672-1671[UP5];x-x,1656-1656[BULt];20-21,1652-1651[UP3]	..(((.((((((((((((((..&..))))))))))))))-)))..	GAGGACAAAUAGAAAAAUGGCA&UUCUAUUUUUCUAUUU-UCCAA	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3882_c0_g1_1663_TPlot.pdf
TRINITY_DN3883_c0_g1:916	si_a24	TRINITY_DN3883_c0_g1	905	925	916	-24.20	-16.30	0.673553719008265	12	6-17,920-909;19-21,907-905	1-5,925-921[UP5];18-18,908-908[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GUCAUGGAGCUAAAGAACGUC&AUUUAUUUUUAGUUCUAAGAC	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN3883_c0_g1_916_TPlot.pdf
TRINITY_DN3887_c0_g1:1315	si_s779	TRINITY_DN3887_c0_g1	1303	1324	1315	-29.30	-20.10	0.686006825938567	7	2-12,1323-1313;14-20,1310-1304	1-1,1324-1324[UP5];13-13,1312-1311[AILt];21-21,1303-1303[UP3]	.(((((((..(((((((((((.&.)))))))))))-.))))))).	CGCUUGUUCGUAUAGUGAUAGC&ACUAUUGCUAUA-AAACAAGCU	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s779_TRINITY_DN3887_c0_g1_1315_TPlot.pdf
TRINITY_DN3887_c0_g1:1316	si_s778	TRINITY_DN3887_c0_g1	1304	1325	1316	-29.00	-19.80	0.682758620689655	7	3-13,1323-1313;15-21,1310-1304	1-2,1325-1324[UP5];14-14,1312-1311[AILt]	(((((((..(((((((((((..&..)))))))))))-.)))))))	GCUUGUUCGUAUAGUGAUAGCA&UACUAUUGCUAUA-AAACAAGC	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s778_TRINITY_DN3887_c0_g1_1316_TPlot.pdf
TRINITY_DN3889_c0_g1:1939	si_s70	TRINITY_DN3889_c0_g1	1928	1948	1939	-25.80	-18.40	0.713178294573643	5.5	2-6,1947-1943;8-20,1941-1929	1-1,1948-1948[UP5];7-7,1942-1942[SIL];21-21,1928-1928[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAAAGAGAAAAAGGAGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999428223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN3889_c0_g1_1939_TPlot.pdf
TRINITY_DN3889_c0_g1:2668	si_s316	TRINITY_DN3889_c0_g1	2657	2677	2668	-31.50	-22.00	0.698412698412698	9	3-16,2675-2662;18-18,2660-2660	1-2,2677-2676[UP5];17-17,2661-2661[SIL];19-21,2659-2657[UP3]	...(.((((((((((((((..&..)))))))))))))).)...	AGAGCGACGAGAAGGACGGUG&UUCUGUCCUUCUUGUUACAAA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN3889_c0_g1_2668_TPlot.pdf
TRINITY_DN3889_c0_g1:270	si_s369	TRINITY_DN3889_c0_g1	259	279	270	-42.00	-28.50	0.678571428571429	9.5	2-2,278-278;5-8,275-272;10-19,270-261	1-1,279-279[UP5];3-4,277-276[SIL];9-9,271-271[SIL];20-21,260-259[UP3]	..((((((((((.((((..(.&.)..)))).))))))))))..	GCCACGUGAGCGUUCGGGGCG&UGAACCGAUCGCUCGCGUGUC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN3889_c0_g1_270_TPlot.pdf
TRINITY_DN3889_c0_g1:271	si_s368	TRINITY_DN3889_c0_g1	260	280	271	-40.10	-28.60	0.713216957605985	9.5	2-3,279-278;6-9,275-272;11-20,270-261	1-1,280-280[UP5];4-5,277-276[SIL];10-10,271-271[SIL];21-21,260-260[UP3]	.((((((((((.((((..((.&.))..)))).)))))))))).	CCACGUGAGCGUUCGGGGCGC&UUGAACCGAUCGCUCGCGUGU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN3889_c0_g1_271_TPlot.pdf
TRINITY_DN3889_c0_g1:272	si_s367	TRINITY_DN3889_c0_g1	261	281	272	-39.40	-28.30	0.718274111675127	10.5	3-4,279-278;7-10,275-272;12-21,270-261	1-2,281-280[UP5];5-6,277-276[SIL];11-11,271-271[SIL]	((((((((((.((((..((..&..))..)))).))))))))))	CACGUGAGCGUUCGGGGCGCG&AUUGAACCGAUCGCUCGCGUG	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN3889_c0_g1_272_TPlot.pdf
TRINITY_DN3889_c0_g1:301	si_s86	TRINITY_DN3889_c0_g1	287	310	301	-32.90	-21.44	0.651671732522796	15	4-12,307-299;14-21,294-287	1-3,310-308[UP5];13-13,298-295[AILt]	((((((((....(((((((((...&...)))))))))---.))))))))	GGCGGAGAUCCUGGAGAAGGGCCU&UUUCCUUUCUUC---UUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3889_c0_g1_301_TPlot.pdf
TRINITY_DN3889_c0_g1:322	si_s796	TRINITY_DN3889_c0_g1	312	331	322	-30.30	-19.90	0.656765676567657	7.5	1-12,331-320;14-15,318-317;18-20,315-313	13-13,319-319[SIL];16-17,316-316[AILq];21-21,312-312[UP3]	.(((.-((.((((((((((((&)))))))))))).))..))).	CGCGU-GAAGGAGUACGAGCU&AGCUCGUAUUUUAUCUUCGUU	3	0.999999881950583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3889_c0_g1_322_TPlot.pdf
TRINITY_DN3889_c0_g1:323	si_s795	TRINITY_DN3889_c0_g1	313	332	323	-30.30	-20.20	0.666666666666667	7	2-13,331-320;15-16,318-317;19-21,315-313	1-1,332-332[UP5];14-14,319-319[SIL];17-18,316-316[AILq]	(((.-((.((((((((((((.&.)))))))))))).))..)))	GCGU-GAAGGAGUACGAGCUG&AAGCUCGUAUUUUAUCUUCGU	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN3889_c0_g1_323_TPlot.pdf
TRINITY_DN3889_c0_g1:473	si_a529	TRINITY_DN3889_c0_g1	462	481	473	-43.20	-28.40	0.657407407407407	6.5	1-6,481-476;8-11,475-472;12-14,470-468;16-21,467-462	7-7,x-x[BULq];x-x,471-471[BULt];15-15,x-x[BULq]	((((((-(((.((((-((((((&)))))).))))-))).))))))	GGCCGG-CGCGUCGC-UGUCCG&CGGACACGCGA-GCGAUCGGUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a529_TRINITY_DN3889_c0_g1_473_TPlot.pdf
TRINITY_DN3889_c0_g1:474	si_a528	TRINITY_DN3889_c0_g1	463	482	474	-45.70	-31.70	0.693654266958424	6	1-7,482-476;9-12,475-472;13-15,470-468;17-21,467-463	8-8,x-x[BULq];x-x,471-471[BULt];16-16,x-x[BULq]	(((((-(((.((((-(((((((&))))))).))))-))).)))))	GCCGG-CGCGUCGC-UGUCCGC&GCGGACACGCGA-GCGAUCGGU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a528_TRINITY_DN3889_c0_g1_474_TPlot.pdf
TRINITY_DN3889_c0_g1:475	si_a527	TRINITY_DN3889_c0_g1	464	483	475	-47.30	-34.00	0.718816067653277	4.5	1-8,483-476;10-13,475-472;14-16,470-468;18-21,467-464	9-9,x-x[BULq];x-x,471-471[BULt];17-17,x-x[BULq]	((((-(((.((((-((((((((&)))))))).))))-))).))))	CCGG-CGCGUCGC-UGUCCGCC&GGCGGACACGCGA-GCGAUCGG	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a527_TRINITY_DN3889_c0_g1_475_TPlot.pdf
TRINITY_DN3889_c0_g1:476	si_a526	TRINITY_DN3889_c0_g1	465	484	476	-45.60	-30.30	0.664473684210526	5.5	2-9,483-476;11-14,475-472;15-17,470-468;19-21,467-465	1-1,484-484[UP5];10-10,x-x[BULq];x-x,471-471[BULt];18-18,x-x[BULq]	(((-(((.((((-((((((((.&.)))))))).))))-))).)))	CGG-CGCGUCGC-UGUCCGCCG&AGGCGGACACGCGA-GCGAUCG	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN3889_c0_g1_476_TPlot.pdf
TRINITY_DN3889_c0_g1:477	si_a524	TRINITY_DN3889_c0_g1	466	486	477	-42.50	-28.30	0.665882352941176	10	4-11,483-476;13-16,475-472;17-19,470-468	1-3,486-484[UP5];12-12,x-x[BULq];x-x,471-471[BULt];20-21,467-466[UP3]	..(((.((((-((((((((...&...)))))))).))))-)))..	GGCGCGUCGC-UGUCCGCCGAG&UAAGGCGGACACGCGA-GCGAU	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a524_TRINITY_DN3889_c0_g1_477_TPlot.pdf
TRINITY_DN3889_c0_g1:478	si_a523	TRINITY_DN3889_c0_g1	467	487	478	-44.10	-29.50	0.668934240362812	8	1-2,487-486;5-12,483-476;14-17,475-472;18-20,470-468	3-4,485-484[SIL];13-13,x-x[BULq];x-x,471-471[BULt];21-21,467-467[UP3]	.(((.((((-((((((((..((&))..)))))))).))))-))).	GCGCGUCGC-UGUCCGCCGAGC&GUAAGGCGGACACGCGA-GCGA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a523_TRINITY_DN3889_c0_g1_478_TPlot.pdf
TRINITY_DN3889_c0_g1:479	si_a522	TRINITY_DN3889_c0_g1	468	488	479	-43.80	-29.30	0.668949771689498	8	2-3,487-486;6-13,483-476;15-18,475-472;19-21,470-468	1-1,488-488[UP5];4-5,485-484[SIL];14-14,x-x[BULq];x-x,471-471[BULt]	(((.((((-((((((((..((.&.))..)))))))).))))-)))	CGCGUCGC-UGUCCGCCGAGCC&UGUAAGGCGGACACGCGA-GCG	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a522_TRINITY_DN3889_c0_g1_479_TPlot.pdf
TRINITY_DN388_c0_g1:1478	si_a784	TRINITY_DN388_c0_g1	1467	1487	1478	-24.70	-16.20	0.65587044534413	10.5	2-11,1486-1477;13-16,1475-1472	1-1,1487-1487[UP5];12-12,1476-1476[SIL];17-21,1471-1467[UP3]	.....((((.((((((((((.&.)))))))))).)))).....	UGGCGAGAGCGAUAGAGGAGA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN388_c0_g1_1478_TPlot.pdf
TRINITY_DN388_c0_g1:1479	si_a783	TRINITY_DN388_c0_g1	1468	1488	1479	-24.70	-16.20	0.65587044534413	10.5	3-12,1486-1477;14-17,1475-1472	1-2,1488-1487[UP5];13-13,1476-1476[SIL];18-21,1471-1468[UP3]	....((((.((((((((((..&..)))))))))).))))....	GGCGAGAGCGAUAGAGGAGAA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN388_c0_g1_1479_TPlot.pdf
TRINITY_DN388_c0_g1:1944	si_a125	TRINITY_DN388_c0_g1	1934	1952	1944	-25.00	-16.30	0.652	5.5	1-7,1952-1946;9-16,1945-1938;18-21,1937-1934	8-8,x-x[BULq];17-17,x-x[BULq]	((((-((((((((-(((((((&))))))).)))))))).))))	AGUU-CUAUUGCU-UGAGACA&UGUUUUAUAGCAAUAGUAAUU	2	0.995968609530716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN388_c0_g1_1944_TPlot.pdf
TRINITY_DN388_c0_g1:1948	si_a120	TRINITY_DN388_c0_g1	1938	1957	1948	-30.50	-20.40	0.668852459016393	6	2-4,1956-1954;6-12,1952-1946;14-21,1945-1938	1-1,1957-1957[UP5];5-5,1953-1953[SIL];13-13,x-x[BULq]	((((((((-(((((((.(((.&.))).))))))).))))))))	CUAUUGCU-UGAGACAUGCUG&GAGCUUGUUUUAUAGCAAUAG	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN388_c0_g1_1948_TPlot.pdf
TRINITY_DN388_c0_g1:3835	si_a819	TRINITY_DN388_c0_g1	3824	3844	3835	-28.90	-19.50	0.674740484429066	5.5	1-18,3844-3827	19-21,3826-3824[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUGUUUUUCUUUUCUUCUUUU&AGAAGAAGAAAGGAAAGAAAA	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN388_c0_g1_3835_TPlot.pdf
TRINITY_DN388_c0_g1:3836	si_a818	TRINITY_DN388_c0_g1	3825	3845	3836	-28.90	-20.70	0.716262975778547	4	1-19,3845-3827	20-21,3826-3825[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UGUUUUUCUUUUCUUCUUUUU&AAGAAGAAGAAAGGAAAGAAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN388_c0_g1_3836_TPlot.pdf
TRINITY_DN388_c0_g1:3837	si_a817	TRINITY_DN388_c0_g1	3826	3846	3837	-30.90	-21.00	0.679611650485437	4	2-20,3845-3827	1-1,3846-3846[UP5];21-21,3826-3826[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	GUUUUUCUUUUCUUCUUUUUA&GAAGAAGAAGAAAGGAAAGAA	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN388_c0_g1_3837_TPlot.pdf
TRINITY_DN3890_c0_g1:2541	si_a71	TRINITY_DN3890_c0_g1	2530	2550	2541	-23.30	-18.20	0.781115879828326	8	1-6,2550-2545;9-20,2542-2531	7-8,2544-2543[SIL];21-21,2530-2530[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	AGGUGGAGAACAAACUGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3890_c0_g1_2541_TPlot.pdf
TRINITY_DN3890_c0_g1:2542	si_a70	TRINITY_DN3890_c0_g1	2531	2551	2542	-23.90	-19.30	0.807531380753138	7	1-7,2551-2545;10-21,2542-2531	8-9,2544-2543[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	GGUGGAGAACAAACUGAGAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3890_c0_g1_2542_TPlot.pdf
TRINITY_DN3890_c0_g1:816	si_s803	TRINITY_DN3890_c0_g1	804	825	816	-26.00	-18.00	0.692307692307692	10	4-14,822-812;16-21,809-804	1-3,825-823[UP5];15-15,811-810[AILt]	((((((..(((((((((((...&...)))))))))))-.))))))	AAGGGGCGGGCGAAGAUAGCUC&AUUUUAUCUUCGUU-ACCUUUU	3	0.999999941876609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3890_c0_g1_816_TPlot.pdf
TRINITY_DN3890_c0_g1:91	si_s100	TRINITY_DN3890_c0_g1	79	100	91	-33.70	-23.80	0.706231454005935	8.5	1-14,100-87;15-16,85-84	x-x,86-86[BULt];17-21,83-79[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	GCAGCCCAAGUCCGAAGUGGAG&CUUCGCUUCGGAUU-GGAAAAU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN3890_c0_g1_91_TPlot.pdf
TRINITY_DN3890_c0_g1:94	si_s97	TRINITY_DN3890_c0_g1	82	105	94	-36.30	-24.80	0.683195592286501	10.5	1-3,105-103;4-17,100-87;18-19,85-84	x-x,102-101[BULt];x-x,86-86[BULt];20-21,83-82[UP3]	..((.((((((((((((((..(((&)))--))))))))))))))-))..	GCCCAAGUCCGAAGUGGAGCUGAG&CUU--CUUCGCUUCGGAUU-GGAA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN3890_c0_g1_94_TPlot.pdf
TRINITY_DN3890_c0_g1:97	si_s94	TRINITY_DN3890_c0_g1	86	106	97	-35.50	-27.00	0.76056338028169	8.5	1-4,106-103;7-20,100-87	5-6,102-101[SIL];21-21,86-86[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AAGUCCGAAGUGGAGCUGAGG&CUUCUUCUUCGCUUCGGAUUG	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN3890_c0_g1_97_TPlot.pdf
TRINITY_DN3893_c0_g1:3230	si_a537	TRINITY_DN3893_c0_g1	3219	3244	3230	-36.20	-23.80	0.657458563535912	14	2-5,3243-3240;6-8,3235-3233;9-19,3231-3221	1-1,3244-3244[UP5];x-x,3239-3236[BULt];x-x,3232-3232[BULt];20-21,3220-3219[UP3]	..(((((((((((.(((....((((.&.))))----)))-)))))))))))..	CCAGAUUGAGCCGUAUCUCCGGCUCU&CGAGC----GAU-CGGUUCAAUCUAU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a537_TRINITY_DN3893_c0_g1_3230_TPlot.pdf
TRINITY_DN38949_c0_g1:13	si_s191	TRINITY_DN38949_c0_g1	2	22	13	-26.60	-18.10	0.680451127819549	12	5-11,18-12;13-20,10-3	1-4,22-19[UP5];12-12,11-11[SIL];21-21,2-2[UP3]	.((((((((.(((((((....&....))))))).)))))))).	CACAUUCCAUAGUGAUCAAUU&UAACGAUUAUUUUGGAAUGUA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN38949_c0_g1_13_TPlot.pdf
TRINITY_DN3894_c0_g1:2588	si_s416	TRINITY_DN3894_c0_g1	2576	2597	2588	-27.30	-18.50	0.677655677655678	8	2-11,2596-2587;13-20,2584-2577	1-1,2597-2597[UP5];12-12,2586-2585[AILt];21-21,2576-2576[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	AGUUAUGUGACAAUGUGUCGUC&AACGACAUAUU-CUAUAUAACA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s416_TRINITY_DN3894_c0_g1_2588_TPlot.pdf
TRINITY_DN3894_c0_g1:4291	si_a114	TRINITY_DN3894_c0_g1	4280	4299	4291	-27.90	-18.20	0.652329749103943	9	4-7,4296-4293;9-12,4292-4289;14-21,4287-4280	1-3,4299-4297[UP5];8-8,x-x[BULq];13-13,4288-4288[SIL]	((((((((.((((-((((...&...)))).)))).))))))))	CUGUAGAAGAAGC-CGUACUU&AAAUACGAGCUUGUUUUAUAG	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN3894_c0_g1_4291_TPlot.pdf
TRINITY_DN3894_c0_g1:6402	si_s68	TRINITY_DN3894_c0_g1	6391	6414	6402	-23.10	-15.52	0.671861471861472	13	1-9,6414-6406;12-20,6400-6392	10-11,6405-6401[AILt];21-21,6391-6391[UP3]	.(((((((((.....(((((((((&)))))))))---..))))))))).	UAAGAAAAAAUAUCUUAGGGGUUG&CAACUUCUA---UUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3894_c0_g1_6402_TPlot.pdf
TRINITY_DN3895_c0_g1:6451	si_s666	TRINITY_DN3895_c0_g1	6440	6460	6451	-31.30	-21.00	0.670926517571885	7.5	2-15,6459-6446	1-1,6460-6460[UP5];16-21,6445-6440[UP3]	......((((((((((((((.&.))))))))))))))......	CGCCUCAGUCAAUUCGAUCCA&GGGAUCGAAUUGAUUAUAGAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN3895_c0_g1_6451_TPlot.pdf
TRINITY_DN3895_c0_g1:8144	si_s543	TRINITY_DN3895_c0_g1	8133	8153	8144	-28.80	-22.28	0.773611111111111	8	1-9,8153-8145;13-20,8141-8134	10-12,8144-8142[SIL];21-21,8133-8133[UP3]	.((((((((...(((((((((&)))))))))...)))))))).	CGAUUCUGUACAGAUCGGAUC&GAUCCGAUCAAAAUAGAAUUA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN3895_c0_g1_8144_TPlot.pdf
TRINITY_DN3895_c0_g1:8233	si_a447	TRINITY_DN3895_c0_g1	8221	8242	8233	-25.70	-17.50	0.680933852140078	9.5	3-16,8240-8227;18-20,8224-8222	1-2,8242-8241[UP5];17-17,8226-8225[AILt];21-21,8221-8221[UP3]	.(((..((((((((((((((..&..))))))))))))))-.))).	CGUAUUCGGCGAUUGUCUCAAG&UAUGAGAUAAUUGUUG-UUAUA	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN3895_c0_g1_8233_TPlot.pdf
TRINITY_DN3895_c0_g1:8418	si_s889	TRINITY_DN3895_c0_g1	8407	8427	8418	-28.80	-24.00	0.833333333333333	12.5	7-21,8421-8407	1-6,8427-8422[UP5]	(((((((((((((((......&......)))))))))))))))	GAGGAGAAAGCCUGUCGCCUG&AAAUAAAUAGGCUUUCUCUUC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3895_c0_g1_8418_TPlot.pdf
TRINITY_DN3895_c0_g1:9842	si_a825	TRINITY_DN3895_c0_g1	9831	9851	9842	-24.00	-15.70	0.654166666666667	8	1-2,9851-9850;5-11,9847-9841;14-20,9838-9832	3-4,9849-9848[SIL];12-13,9840-9839[SIL];21-21,9831-9831[UP3]	.(((((((..(((((((..((&))..)))))))..))))))).	AAUUUUUUGGCUUUCCUAGCU&AGAAAGGAAAGAAAAAAAAUA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a825_TRINITY_DN3895_c0_g1_9842_TPlot.pdf
TRINITY_DN3895_c0_g1:9843	si_a824	TRINITY_DN3895_c0_g1	9832	9852	9843	-23.60	-15.70	0.665254237288135	7	2-3,9851-9850;6-12,9847-9841;15-21,9838-9832	1-1,9852-9852[UP5];4-5,9849-9848[SIL];13-14,9840-9839[SIL]	(((((((..(((((((..((.&.))..)))))))..)))))))	AUUUUUUGGCUUUCCUAGCUG&AAGAAAGGAAAGAAAAAAAAU	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN3895_c0_g1_9843_TPlot.pdf
TRINITY_DN3896_c0_g1:612	si_a23	TRINITY_DN3896_c0_g1	601	621	612	-22.80	-15.10	0.662280701754386	10	4-20,618-602	1-3,621-619[UP5];21-21,601-601[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUUUAGAAUUGGAAAUGAGAA&UAUUUAUUUUUAGUUCUAAGA	2	0.999824886012476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN3896_c0_g1_612_TPlot.pdf
TRINITY_DN3896_c0_g1:614	si_a21	TRINITY_DN3896_c0_g1	603	626	614	-24.30	-15.94	0.6559670781893	12	1-3,626-624;5-21,619-603	4-4,623-620[AILt]	(((((((((((((((((....(((&)))---.)))))))))))))))))	UUAGAAUUGGAAAUGAGAAACAGG&CCU---AUUUAUUUUUAGUUCUAA	2	0.999970463173638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN3896_c0_g1_614_TPlot.pdf
TRINITY_DN3896_c0_g1:678	si_s79	TRINITY_DN3896_c0_g1	667	687	678	-26.20	-17.40	0.66412213740458	6.5	1-10,687-678;13-21,675-667	11-12,677-676[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AAGAAGAGAAAAAGGAGAAAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3896_c0_g1_678_TPlot.pdf
TRINITY_DN38977_c0_g1:172	si_s376	TRINITY_DN38977_c0_g1	161	187	172	-42.50	-27.80	0.654117647058824	18	3-5,185-183;6-9,181-178;10-19,172-163	1-2,187-186[UP5];x-x,182-182[BULt];x-x,177-173[BULt];20-21,162-161[UP3]	..((((((((((.....((((.(((..&..)))-))))-----))))))))))..	UCAGGCGGACGCCCAAUGCGAUGCGCU&AUCGC-UCGC-----GUGUCCGCCUUA	4	0.999998279742994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN38977_c0_g1_172_TPlot.pdf
TRINITY_DN3897_c0_g1:514	si_s801	TRINITY_DN3897_c0_g1	503	522	514	-28.20	-18.50	0.656028368794326	8	1-7,522-516;9-16,515-508;18-21,506-503	8-8,x-x[BULq];17-17,507-507[SIL]	((((.((((((((-(((((((&))))))).)))))))).))))	AGGGAGACGGAGG-AAGGUAC&GUAUUUUAUCUUCGUUACCUU	4	0.999999866969761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN3897_c0_g1_514_TPlot.pdf
TRINITY_DN3899_c0_g1:46	si_a795	TRINITY_DN3899_c0_g1	35	58	46	-30.20	-20.70	0.685430463576159	10.5	1-5,58-54;6-19,50-37	x-x,53-51[BULt];20-21,36-35[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	UAUUGGAUUGGAAAGUCAAAGAGA&UUUCU---AUUUUCCAAUCCGAAG	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN3899_c0_g1_46_TPlot.pdf
TRINITY_DN3899_c0_g1:50	si_a791	TRINITY_DN3899_c0_g1	39	62	50	-26.50	-20.40	0.769811320754717	12	3-9,60-54;10-21,50-39	1-2,62-61[UP5];x-x,53-51[BULt]	((((((((((((...(((((((..&..)))))))---))))))))))))	GGAUUGGAAAGUCAAAGAGAGAAG&UAUUUUUCU---AUUUUCCAAUCC	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN3899_c0_g1_50_TPlot.pdf
TRINITY_DN389_c0_g1:190	si_a141	TRINITY_DN389_c0_g1	179	199	190	-23.80	-15.50	0.651260504201681	16.5	8-20,192-180	1-7,199-193[UP5];21-21,179-179[UP3]	.(((((((((((((.......&.......))))))))))))).	AAAAGCGGCGACGACUUUUCA&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN389_c0_g1_190_TPlot.pdf
TRINITY_DN389_c0_g1:2282	si_a866	TRINITY_DN389_c0_g1	2271	2291	2282	-23.30	-15.50	0.665236051502146	7	1-9,2291-2283;11-19,2281-2273	10-10,2282-2282[SIL];20-21,2272-2271[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GUGCUAAGUUUGUGAUAAUUG&CAAUUAUUAAAGAUUUAGUUG	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN389_c0_g1_2282_TPlot.pdf
TRINITY_DN389_c0_g1:259	si_a404	TRINITY_DN389_c0_g1	248	268	259	-21.70	-14.60	0.672811059907834	9	1-6,268-263;9-16,260-253	7-8,262-261[SIL];17-21,252-248[UP3]	.....((((((((..((((((&))))))..)))))))).....	AGUGAAUAAACAAUUCAAUUC&GAAUUGUUUUGUUUAUAUUUA	2	0.999999998528535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN389_c0_g1_259_TPlot.pdf
TRINITY_DN389_c0_g1:260	si_a403	TRINITY_DN389_c0_g1	249	269	260	-22.00	-14.60	0.663636363636364	9	2-7,268-263;10-17,260-253	1-1,269-269[UP5];8-9,262-261[SIL];18-21,252-249[UP3]	....((((((((..((((((.&.))))))..))))))))....	GUGAAUAAACAAUUCAAUUCG&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999999898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN389_c0_g1_260_TPlot.pdf
TRINITY_DN389_c0_g1:261	si_a402	TRINITY_DN389_c0_g1	250	270	261	-22.40	-14.60	0.651785714285714	10	3-8,268-263;11-18,260-253	1-2,270-269[UP5];9-10,262-261[SIL];19-21,252-250[UP3]	...((((((((..((((((..&..))))))..))))))))...	UGAAUAAACAAUUCAAUUCGC&UAGAAUUGUUUUGUUUAUAUU	3	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN389_c0_g1_261_TPlot.pdf
TRINITY_DN389_c0_g1:282	si_a151	TRINITY_DN389_c0_g1	271	293	282	-28.90	-18.94	0.655363321799308	13.5	1-6,293-288;11-20,281-272	7-10,287-282[AILt];21-21,271-271[UP3]	.((((((((((......((((((&))))))--....)))))))))).	CGAUUGGCCUUUACUCCCAACAA&UUGUUG--UUUUAAGGUCAAUCU	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN389_c0_g1_282_TPlot.pdf
TRINITY_DN389_c0_g1:348	si_a245	TRINITY_DN389_c0_g1	339	357	348	-37.20	-24.80	0.666666666666667	7.5	3-11,355-347;14-21,346-339	1-2,357-356[UP5];12-13,x-x[BULq]	((((((((--(((((((((..&..)))))))))..))))))))	GGUGCAGU--GGGGAUCGAUU&AUUCGAUCCCCCGAUUGUAUC	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a245_TRINITY_DN389_c0_g1_348_TPlot.pdf
TRINITY_DN389_c0_g1:429	si_a667	TRINITY_DN389_c0_g1	419	439	429	-32.10	-21.20	0.660436137071651	6.5	1-9,439-431;11-16,428-423;18-21,422-419	10-10,430-429[AILt];17-17,x-x[BULq]	((((-((((((..(((((((((&)))))))))-.)))))).))))	UGAA-GAGGAAGAUAAUAGGCA&UGCCUAUUG-AUUCCUUAUUCA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN389_c0_g1_429_TPlot.pdf
TRINITY_DN389_c0_g1:432	si_a665	TRINITY_DN389_c0_g1	420	441	432	-29.60	-19.30	0.652027027027027	11.5	3-11,439-431;13-18,428-423	1-2,441-440[UP5];12-12,430-429[AILt];19-21,422-420[UP3]	...((((((..(((((((((..&..)))))))))-.))))))...	GAAGAGGAAGAUAAUAGGCAAC&AAUGCCUAUUG-AUUCCUUAUU	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN389_c0_g1_432_TPlot.pdf
TRINITY_DN38_c0_g1:2099	si_s650	TRINITY_DN38_c0_g1	2088	2106	2099	-41.50	-27.24	0.656385542168675	12	1-7,2106-2100;14-21,2095-2088	8-13,2099-2096[AILq]	((((((((....--(((((((&)))))))......))))))))	AUCCCCCGCUCU--UCGGGGG&CCCUCGAUACAAUCGGGGGAU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s650_TRINITY_DN38_c0_g1_2099_TPlot.pdf
TRINITY_DN38_c0_g1:2164	si_a315	TRINITY_DN38_c0_g1	2153	2173	2164	-27.00	-17.66	0.654074074074074	11.5	1-3,2173-2171;8-18,2166-2156	4-7,2170-2167[SIL];19-21,2155-2153[UP3]	...(((((((((((....(((&)))....)))))))))))...	UUCAGAUCAUGGAUUAGGCCA&UGGAUUUAUCCAUGAUUUUUU	4	0.999999889524339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN38_c0_g1_2164_TPlot.pdf
TRINITY_DN38_c0_g1:2166	si_a313	TRINITY_DN38_c0_g1	2155	2175	2166	-28.70	-18.76	0.653658536585366	10.5	2-5,2174-2171;10-20,2166-2156	1-1,2175-2175[UP5];6-9,2170-2167[SIL];21-21,2155-2155[UP3]	.(((((((((((....((((.&.))))....))))))))))).	CAGAUCAUGGAUUAGGCCAAA&CUUGGAUUUAUCCAUGAUUUU	4	0.999998929956348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN38_c0_g1_2166_TPlot.pdf
TRINITY_DN38_c0_g1:531	si_s610	TRINITY_DN38_c0_g1	520	541	531	-27.20	-19.60	0.720588235294118	8.5	2-8,540-534;9-20,532-521	1-1,541-541[UP5];x-x,533-533[BULt];21-21,520-520[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	UGUUUGGAUUUGGUAGGAGAUA&AAUCUUUU-UUAAAUCCAAGCG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN38_c0_g1_531_TPlot.pdf
TRINITY_DN38_c1_g1:336	si_a113	TRINITY_DN38_c1_g1	325	345	336	-26.20	-27.70	1	0	1-21,345-325	NA	(((((((((((((((((((((&)))))))))))))))))))))	UAUAAAACAAGCUCGUAUUUU&AAAAUACGAGCUUGUUUUAUA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN38_c1_g1_336_TPlot.pdf
TRINITY_DN38_c1_g1:412	si_a37	TRINITY_DN38_c1_g1	401	421	412	-40.10	-41.40	1	0	1-21,421-401	NA	(((((((((((((((((((((&)))))))))))))))))))))	CCUAGACCUACCGGUCUUAGA&UCUAAGACCGGUAGGUCUAGG	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a37_TRINITY_DN38_c1_g1_412_TPlot.pdf
TRINITY_DN38_c1_g1:431	si_a18	TRINITY_DN38_c1_g1	420	440	431	-26.30	-27.80	1	0	1-21,440-420	NA	(((((((((((((((((((((&)))))))))))))))))))))	GAACUAAAAAUAAAUAGGCUU&AAGCCUAUUUAUUUUUAGUUC	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN38_c1_g1_431_TPlot.pdf
TRINITY_DN38_c1_g1:436	si_a13	TRINITY_DN38_c1_g1	425	445	436	-26.80	-27.80	1	0	1-21,445-425	NA	(((((((((((((((((((((&)))))))))))))))))))))	AAAAAUAAAUAGGCUUUCUCU&AGAGAAAGCCUAUUUAUUUUU	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN38_c1_g1_436_TPlot.pdf
TRINITY_DN3901_c0_g1:1536	si_a415	TRINITY_DN3901_c0_g1	1525	1545	1536	-18.10	-13.90	0.767955801104972	4.5	1-6,1545-1540;9-21,1537-1525	7-8,1539-1538[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UUAUAUUUAUUUAUUUAUAAA&UUUAUAUUUAAAUAAAUAUAG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN3901_c0_g1_1536_TPlot.pdf
TRINITY_DN3901_c0_g1:493	si_a457	TRINITY_DN3901_c0_g1	481	502	493	-23.50	-18.70	0.795744680851064	5.5	1-11,502-492;12-21,490-481	x-x,491-491[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	AUAUAUUGUACUGUAACAGCAG&UUGUUGUUAUA-UAUAAUAUGU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN3901_c0_g1_493_TPlot.pdf
TRINITY_DN3901_c0_g1:494	si_a456	TRINITY_DN3901_c0_g1	482	503	494	-22.80	-18.50	0.81140350877193	6	1-12,503-492;13-21,490-482	x-x,491-491[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	UAUAUUGUACUGUAACAGCAGU&AUUGUUGUUAUA-UAUAAUAUG	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN3901_c0_g1_494_TPlot.pdf
TRINITY_DN3901_c0_g1:495	si_a455	TRINITY_DN3901_c0_g1	483	504	495	-21.10	-17.90	0.848341232227488	5.5	2-13,503-492;14-21,490-483	1-1,504-504[UP5];x-x,491-491[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AUAUUGUACUGUAACAGCAGUA&AAUUGUUGUUAUA-UAUAAUAU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN3901_c0_g1_495_TPlot.pdf
TRINITY_DN3901_c0_g1:496	si_a454	TRINITY_DN3901_c0_g1	484	505	496	-21.30	-16.90	0.793427230046948	7	3-14,503-492;15-21,490-484	1-2,505-504[UP5];x-x,491-491[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	UAUUGUACUGUAACAGCAGUAG&UAAUUGUUGUUAUA-UAUAAUA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN3901_c0_g1_496_TPlot.pdf
TRINITY_DN3902_c0_g1:856	si_a503	TRINITY_DN3902_c0_g1	845	865	856	-32.10	-21.50	0.669781931464174	9.5	2-17,864-849	1-1,865-865[UP5];18-21,848-845[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCUACUAAGGGAGAUGGAGAU&UUUUUCGUCUUCCUUGGAAUG	4	0.999999777119571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN3902_c0_g1_856_TPlot.pdf
TRINITY_DN3902_c0_g1:857	si_a502	TRINITY_DN3902_c0_g1	846	866	857	-32.10	-21.50	0.669781931464174	10.5	3-18,864-849	1-2,866-865[UP5];19-21,848-846[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUACUAAGGGAGAUGGAGAUU&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999962514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN3902_c0_g1_857_TPlot.pdf
TRINITY_DN3904_c0_g2:2063	si_s610	TRINITY_DN3904_c0_g2	2052	2072	2063	-27.20	-18.20	0.669117647058823	9.5	5-20,2068-2053	1-4,2072-2069[UP5];21-21,2052-2052[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGUUUGGAUUUAGAAAAUUAC&AAUCUUUUUUAAAUCCAAGCG	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN3904_c0_g2_2063_TPlot.pdf
TRINITY_DN3904_c0_g2:2303	si_s99	TRINITY_DN3904_c0_g2	2292	2312	2303	-34.60	-22.90	0.661849710982659	9	3-17,2310-2296	1-2,2312-2311[UP5];18-21,2295-2292[UP3]	....(((((((((((((((..&..)))))))))))))))....	AACGCCAAUUCGAAGUGAAAG&UCUUCGCUUCGGAUUGGAAAA	4	0.999639012009468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN3904_c0_g2_2303_TPlot.pdf
TRINITY_DN3904_c0_g2:2411	si_a460	TRINITY_DN3904_c0_g2	2400	2421	2411	-21.60	-14.10	0.652777777777778	8.5	1-5,2421-2417;7-19,2414-2402	6-6,2416-2415[AILt];20-21,2401-2400[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	UGUACGUAUUAUAUACAAGCGA&UUGUU-AUAUAUAAUAUGUAAU	4	0.999990652142784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN3904_c0_g2_2411_TPlot.pdf
TRINITY_DN3904_c0_g2:2412	si_a459	TRINITY_DN3904_c0_g2	2401	2422	2412	-23.20	-15.40	0.663793103448276	8	1-6,2422-2417;8-20,2414-2402	7-7,2416-2415[AILt];21-21,2401-2401[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	GUACGUAUUAUAUACAAGCGAU&GUUGUU-AUAUAUAAUAUGUAA	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN3904_c0_g2_2412_TPlot.pdf
TRINITY_DN3904_c2_g2:359	si_a82	TRINITY_DN3904_c2_g2	348	367	359	-23.70	-16.50	0.69620253164557	7	1-7,367-361;10-20,359-349	8-9,360-360[AILq];21-21,348-348[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	ACUUUUCUUAGUU-UGAAGAA&UUUUUCAUUAUUAAGAAAAGG	1	0.0185518421513712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN3904_c2_g2_359_TPlot.pdf
TRINITY_DN3904_c2_g2:843	si_a146	TRINITY_DN3904_c2_g2	833	852	843	-29.70	-22.30	0.750841750841751	5	3-15,850-838;18-21,836-833	1-2,852-851[UP5];16-17,837-837[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	GACCA-AAAACAACAACGAAU&AAUCGUUGUUGUUUUAAGGUC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN3904_c2_g2_843_TPlot.pdf
TRINITY_DN3904_c4_g1:379	si_s758	TRINITY_DN3904_c4_g1	368	388	379	-23.50	-16.30	0.693617021276596	9	3-15,386-374	1-2,388-387[UP5];16-21,373-368[UP3]	......(((((((((((((..&..)))))))))))))......	AUCAAUUCGUUGUUGUUUUUG&UUAAAACAACAACGAUUAAUU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN3904_c4_g1_379_TPlot.pdf
TRINITY_DN3906_c0_g1:2186	si_a319	TRINITY_DN3906_c0_g1	2176	2195	2186	-22.40	-16.10	0.71875	6.5	1-13,2195-2183;16-20,2181-2177	14-15,2182-2182[AILq];21-21,2176-2176[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	UAUGAAC-AGUCGUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	4	0.999996383167557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN3906_c0_g1_2186_TPlot.pdf
TRINITY_DN39077_c0_g1:341	si_s64	TRINITY_DN39077_c0_g1	330	350	341	-24.10	-15.90	0.659751037344398	11.5	4-8,347-343;10-19,341-332	1-3,350-348[UP5];9-9,342-342[SIL];20-21,331-330[UP3]	..((((((((((.(((((...&...))))).))))))))))..	UUGGAAGAUGGAUGUUGCCAA&UUAGCAACUUCUAUUUUUUUU	4	0.999999999996979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN39077_c0_g1_341_TPlot.pdf
TRINITY_DN39077_c0_g2:503	si_s70	TRINITY_DN39077_c0_g2	492	511	503	-25.80	-19.30	0.748062015503876	7.5	2-7,510-505;10-21,503-492	1-1,511-511[UP5];8-9,504-504[AILq]	((((((((((((.-((((((.&.))))))..))))))))))))	GGGAGGAGAAAAU-UGGAAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.995968609530716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN39077_c0_g2_503_TPlot.pdf
TRINITY_DN39089_c0_g1:220	si_a405	TRINITY_DN39089_c0_g1	209	229	220	-19.80	-13.50	0.681818181818182	8	1-4,229-226;6-17,224-213	5-5,225-225[SIL];18-21,212-209[UP3]	....((((((((((((.((((&)))).))))))))))))....	CUACAUAUAAGCAAAAGAGUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN39089_c0_g1_220_TPlot.pdf
TRINITY_DN3908_c0_g1:1214	si_s68	TRINITY_DN3908_c0_g1	1200	1223	1214	-23.10	-15.70	0.67965367965368	8.5	3-14,1221-1210;15-21,1206-1200	1-2,1223-1222[UP5];x-x,1209-1207[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	GAGGAAACACAGAAAUAGGAGUAG&CAACUUCUAUUUUU---UUUCUUU	2	0.999999999963493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3908_c0_g1_1214_TPlot.pdf
TRINITY_DN39095_c0_g1:164	si_a664	TRINITY_DN39095_c0_g1	143	173	164	-29.60	-20.00	0.675675675675676	14	2-13,172-161;14-19,150-145	1-1,173-173[UP5];x-x,160-151[BULt];20-21,144-143[UP3]	..((((((..........((((((((((((.&.))))))))))))----------))))))..	AAAAGGAAUAUUUAACUUUCAAUGGGCAUUG&AAAUGCCUAUUGA----------UUCCUUAU	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN39095_c0_g1_164_TPlot.pdf
TRINITY_DN390_c0_g1:139	si_s548	TRINITY_DN390_c0_g1	128	149	139	-22.50	-14.90	0.662222222222222	6.5	1-4,149-146;6-9,144-141;11-21,138-128	5-5,145-145[SIL];10-10,140-139[AILt]	(((((((((((..((((.((((&)))).))))-.)))))))))))	AAUAUUAGUUCGAAUUUAGAUC&GAUCAAAAU-AGAAUUAAUAUU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN390_c0_g1_139_TPlot.pdf
TRINITY_DN390_c0_g1:190	si_a764	TRINITY_DN390_c0_g1	179	198	190	-28.90	-19.70	0.681660899653979	9.5	1-6,198-193;9-20,191-180	7-8,192-192[AILq];21-21,179-179[UP3]	.((((((((((((.-((((((&))))))..)))))))))))).	AUGAAUCAGUCGGU-GCUCAA&UUGGGUUUUUGAUUGAUUCAA	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN390_c0_g1_190_TPlot.pdf
TRINITY_DN390_c0_g1:829	si_a757	TRINITY_DN390_c0_g1	818	842	829	-33.10	-21.76	0.657401812688822	15	1-7,842-836;10-19,829-820	8-9,835-830[AILt];20-21,819-818[UP3]	..((((((((((......(((((((&)))))))----..))))))))))..	AUUUAAAAGCCCUUAAACAGGAGGU&ACCUCCU----UUGGGUUUUUGAUU	2	0.999998270355489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN390_c0_g1_829_TPlot.pdf
TRINITY_DN390_c0_g1:830	si_a756	TRINITY_DN390_c0_g1	819	843	830	-33.10	-22.66	0.684592145015106	14	1-8,843-836;11-20,829-820	9-10,835-830[AILt];21-21,819-819[UP3]	.((((((((((......((((((((&))))))))----..)))))))))).	UUUAAAAGCCCUUAAACAGGAGGUU&AACCUCCU----UUGGGUUUUUGAU	2	0.998748712081398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN390_c0_g1_830_TPlot.pdf
TRINITY_DN390_c0_g1:837	si_a753	TRINITY_DN390_c0_g1	822	846	837	-33.10	-23.66	0.714803625377644	14.5	3-11,844-836;14-21,829-822	1-2,846-845[UP5];12-13,835-830[AILt]	((((((((......(((((((((..&..)))))))))----..))))))))	AAAAGCCCUUAAACAGGAGGUUCUG&AUGAACCUCCU----UUGGGUUUUU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN390_c0_g1_837_TPlot.pdf
TRINITY_DN390_c0_g1:838	si_a752	TRINITY_DN390_c0_g1	823	847	838	-34.80	-22.96	0.659770114942529	15.5	4-12,844-836;15-21,829-823	1-3,847-845[UP5];13-14,835-830[AILt]	(((((((......(((((((((...&...)))))))))----..)))))))	AAAGCCCUUAAACAGGAGGUUCUGU&CAUGAACCUCCU----UUGGGUUUU	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN390_c0_g1_838_TPlot.pdf
TRINITY_DN39100_c0_g1:1339	si_s474	TRINITY_DN39100_c0_g1	1326	1348	1339	-31.80	-20.90	0.657232704402516	11.5	1-10,1348-1339;11-15,1336-1332	x-x,1338-1337[BULt];16-21,1331-1326[UP3]	......(((((..((((((((((&))))))))))--)))))......	AUCAACAUGGGUUGUCCGUUGGA&UCCAACGGAU--CCUAUAUUUAU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN39100_c0_g1_1339_TPlot.pdf
TRINITY_DN39100_c0_g1:1340	si_s473	TRINITY_DN39100_c0_g1	1327	1349	1340	-31.80	-22.20	0.69811320754717	10.5	1-11,1349-1339;12-16,1336-1332	x-x,1338-1337[BULt];17-21,1331-1327[UP3]	.....(((((..(((((((((((&)))))))))))--))))).....	UCAACAUGGGUUGUCCGUUGGAU&AUCCAACGGAU--CCUAUAUUUA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN39100_c0_g1_1340_TPlot.pdf
TRINITY_DN39100_c0_g1:1342	si_s471	TRINITY_DN39100_c0_g1	1329	1351	1342	-32.00	-23.00	0.71875	8	2-13,1350-1339;14-18,1336-1332	1-1,1351-1351[UP5];x-x,1338-1337[BULt];19-21,1331-1329[UP3]	...(((((..((((((((((((.&.))))))))))))--)))))...	AACAUGGGUUGUCCGUUGGAUGG&AUAUCCAACGGAU--CCUAUAUU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN39100_c0_g1_1342_TPlot.pdf
TRINITY_DN39100_c0_g1:1343	si_s470	TRINITY_DN39100_c0_g1	1330	1352	1343	-33.70	-23.00	0.682492581602374	9	3-14,1350-1339;15-19,1336-1332	1-2,1352-1351[UP5];x-x,1338-1337[BULt];20-21,1331-1330[UP3]	..(((((..((((((((((((..&..))))))))))))--)))))..	ACAUGGGUUGUCCGUUGGAUGGC&CAUAUCCAACGGAU--CCUAUAU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s470_TRINITY_DN39100_c0_g1_1343_TPlot.pdf
TRINITY_DN39100_c0_g1:1344	si_s469	TRINITY_DN39100_c0_g1	1331	1356	1344	-34.50	-23.30	0.67536231884058	11	1-3,1356-1354;4-15,1350-1339;16-20,1336-1332	x-x,1353-1351[BULt];x-x,1338-1337[BULt];21-21,1331-1331[UP3]	.(((((..((((((((((((...(((&)))---))))))))))))--))))).	CAUGGGUUGUCCGUUGGAUGGCCUGA&UCA---UAUCCAACGGAU--CCUAUA	1	0.0112702197588788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s469_TRINITY_DN39100_c0_g1_1344_TPlot.pdf
TRINITY_DN39100_c0_g1:2152	si_a635	TRINITY_DN39100_c0_g1	2139	2161	2152	-26.10	-17.50	0.670498084291188	12	2-12,2160-2150;13-18,2147-2142	1-1,2161-2161[UP5];x-x,2149-2148[BULt];19-21,2141-2139[UP3]	...((((((..(((((((((((.&.)))))))))))--))))))...	CUGACUCGGUCGAGAAUCGGCAC&AUGUCGAUUUUU--UUGAGUAAU	4	0.999999997812527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN39100_c0_g1_2152_TPlot.pdf
TRINITY_DN39104_c0_g1:1398	si_a871	TRINITY_DN39104_c0_g1	1387	1407	1398	-26.40	-19.50	0.738636363636364	6.5	1-4,1407-1404;6-17,1402-1391;19-21,1389-1387	5-5,1403-1403[SIL];18-18,1390-1390[SIL]	(((.((((((((((((.((((&)))).)))))))))))).)))	GAUGGCAGCUAGGUCUCUGAU&AUUAAAGAUUUAGUUGCAAUC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN39104_c0_g1_1398_TPlot.pdf
TRINITY_DN39104_c0_g1:1610	si_a75	TRINITY_DN39104_c0_g1	1599	1619	1610	-21.30	-15.20	0.713615023474178	8	1-3,1619-1617;5-20,1615-1600	4-4,1616-1616[SIL];21-21,1599-1599[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	CUGAUGAUGAAGAAUGGAUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN39104_c0_g1_1610_TPlot.pdf
TRINITY_DN39104_c0_g1:1611	si_a74	TRINITY_DN39104_c0_g1	1600	1620	1611	-22.20	-16.30	0.734234234234234	7	1-4,1620-1617;6-21,1615-1600	5-5,1616-1616[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	UGAUGAUGAAGAAUGGAUUGA&UCAAAUUGUUUUUCAUUAUUA	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN39104_c0_g1_1611_TPlot.pdf
TRINITY_DN39104_c0_g1:1613	si_a547	TRINITY_DN39104_c0_g1	1603	1622	1613	-26.90	-18.70	0.695167286245353	6.5	3-12,1620-1611;14-20,1610-1604	1-2,1622-1621[UP5];13-13,x-x[BULq];21-21,1603-1603[UP3]	.(((((((-((((((((((..&..)))))))))).))))))).	UGAUGAAG-AAUGGAUUGACA&GUUCAAUCUAUUUCUUUAUCU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN39104_c0_g1_1613_TPlot.pdf
TRINITY_DN39104_c0_g1:1688	si_s894	TRINITY_DN39104_c0_g1	1677	1697	1688	-29.10	-19.60	0.673539518900344	13	5-17,1693-1681	1-4,1697-1694[UP5];18-21,1680-1677[UP3]	....(((((((((((((....&....)))))))))))))....	GUUCUGAAGAGGAAGUCGUAG&AAUAGGCUUUCUCUUCAAUUU	3	0.999998359419766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN39104_c0_g1_1688_TPlot.pdf
TRINITY_DN39104_c0_g1:1690	si_s892	TRINITY_DN39104_c0_g1	1679	1699	1690	-29.50	-19.60	0.664406779661017	15	7-19,1693-1681	1-6,1699-1694[UP5];20-21,1680-1679[UP3]	..(((((((((((((......&......)))))))))))))..	UCUGAAGAGGAAGUCGUAGAU&UAAAUAGGCUUUCUCUUCAAU	2	0.999320017310017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN39104_c0_g1_1690_TPlot.pdf
TRINITY_DN39104_c0_g1:1691	si_s891	TRINITY_DN39104_c0_g1	1680	1700	1691	-29.60	-19.60	0.662162162162162	15.5	8-20,1693-1681	1-7,1700-1694[UP5];21-21,1680-1680[UP3]	.(((((((((((((.......&.......))))))))))))).	CUGAAGAGGAAGUCGUAGAUA&AUAAAUAGGCUUUCUCUUCAA	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN39104_c0_g1_1691_TPlot.pdf
TRINITY_DN39104_c0_g1:1692	si_s890	TRINITY_DN39104_c0_g1	1681	1701	1692	-29.50	-19.30	0.654237288135593	16.5	9-21,1693-1681	1-8,1701-1694[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGGAAGUCGUAGAUAA&AAUAAAUAGGCUUUCUCUUCA	2	0.999586680298714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN39104_c0_g1_1692_TPlot.pdf
TRINITY_DN39104_c0_g1:1723	si_s80	TRINITY_DN39104_c0_g1	1712	1732	1723	-28.20	-18.90	0.670212765957447	4	1-10,1732-1723;11-12,1721-1720;15-21,1718-1712	x-x,1722-1722[BULt];13-14,1719-1719[AILq]	(((((((.-((.((((((((((&))))))))))-))..)))))))	GAAGAAGC-AGCGAAAGAAAAA&UUUUUCUUUC-CUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN39104_c0_g1_1723_TPlot.pdf
TRINITY_DN39104_c0_g1:1724	si_s79	TRINITY_DN39104_c0_g1	1710	1733	1724	-26.20	-19.10	0.729007633587786	4	1-11,1733-1723;12-13,1721-1720;14-21,1717-1710	x-x,1722-1722[BULt];x-x,1719-1718[BULt]	((((((((..((.(((((((((((&)))))))))))-))--))))))))	AAGAAGAAGCAGCGAAAGAAAAAA&UUUUUUCUUUC-CU--UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN39104_c0_g1_1724_TPlot.pdf
TRINITY_DN39104_c0_g1:1726	si_s77	TRINITY_DN39104_c0_g1	1712	1735	1726	-25.50	-18.00	0.705882352941177	4	2-13,1734-1723;14-15,1721-1720;16-21,1717-1712	1-1,1735-1735[UP5];x-x,1722-1722[BULt];x-x,1719-1718[BULt]	((((((..((.((((((((((((.&.))))))))))))-))--))))))	GAAGAAGCAGCGAAAGAAAAAAAG&UUUUUUUUCUUUC-CU--UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN39104_c0_g1_1726_TPlot.pdf
TRINITY_DN39104_c0_g1:1734	si_s69	TRINITY_DN39104_c0_g1	1723	1740	1734	-23.40	-15.90	0.67948717948718	7	2-7,1739-1734;11-21,1733-1723	1-1,1740-1740[UP5];8-10,x-x[BULq]	(((((((((((---((((((.&.))))))...)))))))))))	GAAAGAAAAAA---AGAAGUC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39104_c0_g1_1734_TPlot.pdf
TRINITY_DN39104_c0_g1:1754	si_s79	TRINITY_DN39104_c0_g1	1743	1765	1754	-26.20	-22.40	0.854961832061069	6	1-6,1765-1760;7-21,1757-1743	x-x,1759-1758[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	AAGAAGAAAGGAAAGCCGAAAGA&UUUUUU--CUUUCCUUUCUUCUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN39104_c0_g1_1754_TPlot.pdf
TRINITY_DN39104_c0_g1:1919	si_a784	TRINITY_DN39104_c0_g1	1908	1928	1919	-24.70	-17.70	0.716599190283401	8	1-9,1928-1920;11-16,1918-1913	10-10,1919-1919[SIL];17-21,1912-1908[UP3]	.....((((((.(((((((((&))))))))).)))))).....	UCAAGAGAAAGUUAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	3	0.999999438910391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN39104_c0_g1_1919_TPlot.pdf
TRINITY_DN39104_c0_g1:1920	si_a783	TRINITY_DN39104_c0_g1	1909	1929	1920	-24.70	-17.90	0.724696356275304	8	2-10,1928-1920;12-17,1918-1913	1-1,1929-1929[UP5];11-11,1919-1919[SIL];18-21,1912-1909[UP3]	....((((((.(((((((((.&.))))))))).))))))....	CAAGAGAAAGUUAGAAGAGUC&AACUCUUCUAUUUUUCUAUUU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN39104_c0_g1_1920_TPlot.pdf
TRINITY_DN39104_c0_g1:2041	si_s81	TRINITY_DN39104_c0_g1	2028	2052	2041	-28.90	-19.20	0.664359861591695	10	1-7,2052-2046;8-13,2043-2038;14-21,2035-2028	x-x,2045-2044[BULt];x-x,2037-2036[BULt]	((((((((..((((((..(((((((&)))))))--))))))--))))))))	AGAAGGGGCAAGAGGAUCGAGAGAA&UUUUCUU--UCCUUU--CUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN39104_c0_g1_2041_TPlot.pdf
TRINITY_DN39104_c0_g1:2042	si_a330	TRINITY_DN39104_c0_g1	2030	2051	2042	-30.50	-19.90	0.652459016393443	10.5	1-6,2051-2046;8-11,2044-2041;12-19,2039-2032	7-7,2045-2045[SIL];x-x,2040-2040[BULt];20-21,2031-2030[UP3]	..((((((((.((((.((((((&)))))).))))-))))))))..	AAGGGGCAAGAGGAUCGAGAGA&UUUUUUUAUUC-CUUGUCCCGA	3	0.999999976626698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN39104_c0_g1_2042_TPlot.pdf
TRINITY_DN39104_c0_g1:2043	si_a329	TRINITY_DN39104_c0_g1	2031	2053	2043	-29.60	-19.90	0.672297297297297	10.5	2-8,2052-2046;9-12,2044-2041;13-20,2039-2032	1-1,2053-2053[UP5];x-x,2045-2045[BULt];x-x,2040-2040[BULt];21-21,2031-2031[UP3]	.((((((((.((((.(((((((.&.)))))))-))))-)))))))).	AGGGGCAAGAGGAUCGAGAGAAG&AUUUUUUU-AUUC-CUUGUCCCG	2	0.999689569524312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN39104_c0_g1_2043_TPlot.pdf
TRINITY_DN39104_c0_g1:2044	si_a328	TRINITY_DN39104_c0_g1	2032	2055	2044	-30.10	-20.20	0.67109634551495	10	1-9,2055-2047;10-13,2044-2041;14-21,2039-2032	x-x,2046-2045[BULt];x-x,2040-2040[BULt]	((((((((.((((..(((((((((&)))))))))--))))-))))))))	GGGGCAAGAGGAUCGAGAGAAGUU&GAUUUUUUU--AUUC-CUUGUCCC	3	0.999994692112501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN39104_c0_g1_2044_TPlot.pdf
TRINITY_DN39104_c0_g1:476	si_s39	TRINITY_DN39104_c0_g1	465	485	476	-22.30	-15.80	0.708520179372197	11.5	5-18,481-468	1-4,485-482[UP5];19-21,467-465[UP3]	...((((((((((((((....&....))))))))))))))...	UCUUCCAGUUAUUAAGGUGCC&AAAUCUUUAAUAAUUGGAUUU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN39104_c0_g1_476_TPlot.pdf
TRINITY_DN39104_c0_g1:821	si_a761	TRINITY_DN39104_c0_g1	808	830	821	-30.10	-20.30	0.674418604651163	9	1-10,830-821;11-13,818-816;15-18,814-811	x-x,820-819[BULt];14-14,815-815[SIL];19-21,810-808[UP3]	...((((.(((..((((((((((&))))))))))--))).))))...	UGACAAUGAAAUUGACCCAAAGG&CCUUUGGGUU--UUUGAUUGAUU	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN39104_c0_g1_821_TPlot.pdf
TRINITY_DN39104_c0_g1:822	si_a760	TRINITY_DN39104_c0_g1	809	831	822	-31.10	-21.90	0.704180064308682	8	1-11,831-821;12-14,818-816;16-19,814-811	x-x,820-819[BULt];15-15,815-815[SIL];20-21,810-809[UP3]	..((((.(((..(((((((((((&)))))))))))--))).))))..	GACAAUGAAAUUGACCCAAAGGA&UCCUUUGGGUU--UUUGAUUGAU	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN39104_c0_g1_822_TPlot.pdf
TRINITY_DN39104_c0_g1:824	si_a758	TRINITY_DN39104_c0_g1	811	833	824	-34.00	-22.10	0.65	6.5	3-13,831-821;14-16,818-816;18-21,814-811	1-2,833-832[UP5];x-x,820-819[BULt];17-17,815-815[SIL]	((((.(((..(((((((((((..&..)))))))))))--))).))))	CAAUGAAAUUGACCCAAAGGAAG&CCUCCUUUGGGUU--UUUGAUUG	4	0.999999998822403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN39104_c0_g1_824_TPlot.pdf
TRINITY_DN39104_c0_g1:831	si_a751	TRINITY_DN39104_c0_g1	820	842	831	-37.20	-24.20	0.650537634408602	8.5	1-6,842-837;7-8,834-833;10-20,831-821	x-x,836-835[BULt];9-9,832-832[SIL];21-21,820-820[UP3]	.(((((((((((.((..((((((&))))))--)).))))))))))).	UGACCCAAAGGAAGUAAUUAUGG&CCAUGA--ACCUCCUUUGGGUUU	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN39104_c0_g1_831_TPlot.pdf
TRINITY_DN39104_c0_g1:833	si_a749	TRINITY_DN39104_c0_g1	822	844	833	-42.10	-30.70	0.729216152019002	7	1-8,844-837;9-10,834-833;12-21,831-822	x-x,836-835[BULt];11-11,832-832[SIL]	((((((((((.((..((((((((&))))))))--)).))))))))))	ACCCAAAGGAAGUAAUUAUGGCC&GGCCAUGA--ACCUCCUUUGGGU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN39104_c0_g1_833_TPlot.pdf
TRINITY_DN39104_c0_g1:837	si_a747	TRINITY_DN39104_c0_g1	824	846	837	-41.30	-26.90	0.651331719128329	7	2-10,845-837;11-12,834-833;14-21,831-824	1-1,846-846[UP5];x-x,836-835[BULt];13-13,832-832[SIL]	((((((((.((..(((((((((.&.)))))))))--)).))))))))	CCAAAGGAAGUAAUUAUGGCCAA&CUGGCCAUGA--ACCUCCUUUGG	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN39104_c0_g1_837_TPlot.pdf
TRINITY_DN39107_c0_g1:246	si_a786	TRINITY_DN39107_c0_g1	235	255	246	-26.60	-17.80	0.669172932330827	9.5	1-6,255-250;8-9,248-247;12-21,244-235	7-7,249-249[SIL];10-11,246-245[SIL]	((((((((((..((.((((((&)))))).))..))))))))))	GGAAGAUAGACUGAAAGGGGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999999999777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN39107_c0_g1_246_TPlot.pdf
TRINITY_DN39111_c0_g1:1108	si_s83	TRINITY_DN39111_c0_g1	1097	1117	1108	-30.90	-25.10	0.812297734627832	4	1-11,1117-1107;13-21,1105-1097	12-12,1106-1106[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GAAGAAGAAAAAAGGAGGGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN39111_c0_g1_1108_TPlot.pdf
TRINITY_DN39111_c0_g1:1141	si_s82	TRINITY_DN39111_c0_g1	1128	1150	1141	-28.90	-21.18	0.732871972318339	10.5	1-10,1150-1141;13-19,1136-1130	11-12,1140-1137[AILt];20-21,1129-1128[UP3]	..(((((((....((((((((((&))))))))))--..)))))))..	UCGAAGAGGUUUUAGGAAAGAAA&UUUCUUUCCU--UUCUUCUUCUU	3	0.999999999996568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN39111_c0_g1_1141_TPlot.pdf
TRINITY_DN39111_c0_g1:1451	si_s80	TRINITY_DN39111_c0_g1	1439	1465	1451	-28.20	-18.80	0.666666666666667	15	2-8,1464-1458;9-10,1452-1451;11-21,1449-1439	1-1,1465-1465[UP5];x-x,1457-1453[BULt];x-x,1450-1450[BULt]	(((((((((((.((.....(((((((.&.)))))))-----))-)))))))))))	GAAGAAGAAGGAGAAAAACAAGAAGAC&UUUUUCUU-----UC-CUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN39111_c0_g1_1451_TPlot.pdf
TRINITY_DN39111_c0_g1:1456	si_s69	TRINITY_DN39111_c0_g1	1445	1465	1456	-23.40	-16.80	0.717948717948718	8	3-7,1463-1459;10-21,1456-1445	1-2,1465-1464[UP5];8-9,1458-1457[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GAAGGAGAAAAACAAGAAGAC&AACUUCUAUUUUUUUUCUUUC	3	0.999999999999857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39111_c0_g1_1456_TPlot.pdf
TRINITY_DN39112_c0_g1:1973	si_a317	TRINITY_DN39112_c0_g1	1962	1982	1973	-24.30	-16.20	0.666666666666667	8.5	1-13,1982-1970;15-18,1968-1965	14-14,1969-1969[SIL];19-21,1964-1962[UP3]	...((((.(((((((((((((&))))))))))))).))))...	UUCAAAGUUUGUGGAUGAGUC&GAUUUAUCCAUGAUUUUUUUA	3	0.999999991154675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN39112_c0_g1_1973_TPlot.pdf
TRINITY_DN39112_c0_g1:1974	si_a316	TRINITY_DN39112_c0_g1	1963	1983	1974	-26.30	-17.30	0.657794676806084	7.5	1-14,1983-1970;16-19,1968-1965	15-15,1969-1969[SIL];20-21,1964-1963[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UCAAAGUUUGUGGAUGAGUCU&GGAUUUAUCCAUGAUUUUUUU	4	0.999999993467485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN39112_c0_g1_1974_TPlot.pdf
TRINITY_DN39112_c0_g1:2068	si_s69	TRINITY_DN39112_c0_g1	2057	2078	2068	-23.40	-15.60	0.666666666666667	7	3-7,2076-2072;8-20,2070-2058	1-2,2078-2077[UP5];x-x,2071-2071[BULt];21-21,2057-2057[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	AAAAGAAAAAAAAUAAGAGGCG&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39112_c0_g1_2068_TPlot.pdf
TRINITY_DN39116_c0_g1:500	si_a330	TRINITY_DN39116_c0_g1	488	509	500	-30.50	-23.00	0.754098360655738	11.5	5-15,505-495;16-20,493-489	1-4,509-506[UP5];x-x,494-494[BULt];21-21,488-488[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	GCGGGAGCAGGGAGUGAAUAGU&UUUUUUUAUUCCUUG-UCCCGA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN39116_c0_g1_500_TPlot.pdf
TRINITY_DN39120_c0_g1:1123	si_s505	TRINITY_DN39120_c0_g1	1110	1132	1123	-24.70	-16.20	0.65587044534413	6.5	2-5,1131-1128;7-17,1126-1116;18-21,1113-1110	1-1,1132-1132[UP5];6-6,1127-1127[SIL];x-x,1115-1114[BULt]	((((..(((((((((((.((((.&.)))).)))))))))))--))))	GAGACAAUGUGGAAUUGCUUUGG&ACAAAACAAUUCUAUAU--UCUU	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN39120_c0_g1_1123_TPlot.pdf
TRINITY_DN39120_c0_g1:1126	si_s502	TRINITY_DN39120_c0_g1	1115	1135	1126	-22.40	-15.20	0.678571428571429	10	5-8,1131-1128;10-21,1126-1115	1-4,1135-1132[UP5];9-9,1127-1127[SIL]	((((((((((((.((((....&....)))).))))))))))))	AAUGUGGAAUUGCUUUGGAUA&UAAACAAAACAAUUCUAUAUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN39120_c0_g1_1126_TPlot.pdf
TRINITY_DN39124_c0_g1:43	si_s10	TRINITY_DN39124_c0_g1	32	52	43	-23.80	-16.10	0.676470588235294	7.5	3-16,50-37;19-21,34-32	1-2,52-51[UP5];17-18,36-35[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	UUAUGAUAGUAAUAAUGGGGU&UACUUAUUAUUACUAUAUUGA	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN39124_c0_g1_43_TPlot.pdf
TRINITY_DN39124_c0_g1:44	si_s9	TRINITY_DN39124_c0_g1	33	53	44	-22.90	-15.00	0.655021834061135	11	4-17,50-37	1-3,53-51[UP5];18-21,36-33[UP3]	....((((((((((((((...&...))))))))))))))....	UAUGAUAGUAAUAAUGGGGUU&UUACUUAUUAUUACUAUAUUG	3	0.999875134613737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN39124_c0_g1_44_TPlot.pdf
TRINITY_DN39124_c0_g1:45	si_s8	TRINITY_DN39124_c0_g1	34	54	45	-21.30	-15.00	0.704225352112676	12	5-18,50-37	1-4,54-51[UP5];19-21,36-34[UP3]	...((((((((((((((....&....))))))))))))))...	AUGAUAGUAAUAAUGGGGUUU&AUUACUUAUUAUUACUAUAUU	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN39124_c0_g1_45_TPlot.pdf
TRINITY_DN39124_c0_g1:46	si_s7	TRINITY_DN39124_c0_g1	35	55	46	-21.70	-15.00	0.691244239631336	13	6-19,50-37	1-5,55-51[UP5];20-21,36-35[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGAUAGUAAUAAUGGGGUUUG&UAUUACUUAUUAUUACUAUAU	2	0.992763914805312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN39124_c0_g1_46_TPlot.pdf
TRINITY_DN3912_c0_g1:552	si_a870	TRINITY_DN3912_c0_g1	541	561	552	-24.80	-16.60	0.669354838709677	8	3-8,559-554;10-21,552-541	1-2,561-560[UP5];9-9,553-553[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GUUGCAAUUAGAGCUUUAGGA&UAUUAAAGAUUUAGUUGCAAU	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN3912_c0_g1_552_TPlot.pdf
TRINITY_DN39133_c0_g1:531	si_a489	TRINITY_DN39133_c0_g1	517	539	531	-27.70	-18.70	0.675090252707581	5	1-7,539-533;9-13,532-528;14-21,524-517	8-8,x-x[BULq];x-x,527-525[BULt]	((((((((...(((((-(((((((&))))))).)))))---))))))))	CGAAAAACGUCGACAU-UUCUAUA&UAUAGAAUAUGUC---GUUUUUCG	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN39133_c0_g1_531_TPlot.pdf
TRINITY_DN39135_c0_g1:1768	si_a353	TRINITY_DN39135_c0_g1	1757	1777	1768	-24.00	-16.10	0.670833333333333	11	5-7,1773-1771;10-21,1768-1757	1-4,1777-1774[UP5];8-9,1770-1769[SIL]	((((((((((((..(((....&....)))..))))))))))))	CGAUCAAAAUAGUCUUACUAG&AUAUUAAUUCUAUUUUGAUCG	2	0.975799899695385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN39135_c0_g1_1768_TPlot.pdf
TRINITY_DN39139_c0_g1:4103	si_a762	TRINITY_DN39139_c0_g1	4092	4113	4103	-29.70	-20.10	0.676767676767677	8.5	1-7,4113-4107;8-20,4105-4093	x-x,4106-4106[BULt];21-21,4092-4092[UP3]	.(((((((((((((.(((((((&)))))))-))))))))))))).	AGAUCAAUCAGAGAUUUCAGAG&CUUUGGG-UUUUUGAUUGAUUC	2	0.999565582530106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN39139_c0_g1_4103_TPlot.pdf
TRINITY_DN3913_c0_g1:6735	si_a299	TRINITY_DN3913_c0_g1	6724	6744	6735	-28.30	-18.80	0.664310954063604	16.5	8-11,6737-6734;13-21,6732-6724	1-7,6744-6738[UP5];12-12,6733-6733[SIL]	(((((((((.((((.......&.......)))).)))))))))	AUCCGAGCGUGUCUCCGCGUG&UUAAAAAAGAUUCGCUUGGAU	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN3913_c0_g1_6735_TPlot.pdf
TRINITY_DN39142_c0_g1:457	si_a793	TRINITY_DN39142_c0_g1	446	466	457	-28.50	-19.10	0.670175438596491	14	4-8,463-459;11-19,456-448	1-3,466-464[UP5];9-10,458-457[SIL];20-21,447-446[UP3]	..(((((((((..(((((...&...)))))..)))))))))..	UGGGAUUGGGAUUUGGAGCUC&UUUUUCUAUUUUCCAAUCCGA	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN39142_c0_g1_457_TPlot.pdf
TRINITY_DN39142_c0_g1:611	si_a880	TRINITY_DN39142_c0_g1	600	620	611	-27.80	-20.40	0.733812949640288	7.5	1-15,620-606	16-21,605-600[UP3]	......(((((((((((((((&)))))))))))))))......	AAACAAGUUGAUUGCAACUGA&UUAGUUGCAAUCAAUAUAGUA	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN39142_c0_g1_611_TPlot.pdf
TRINITY_DN39142_c0_g1:612	si_a879	TRINITY_DN39142_c0_g1	601	621	612	-27.40	-20.60	0.751824817518248	7.5	2-16,620-606	1-1,621-621[UP5];17-21,605-601[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACAAGUUGAUUGCAACUGAU&UUUAGUUGCAAUCAAUAUAGU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN39142_c0_g1_612_TPlot.pdf
TRINITY_DN39143_c0_g1:1207	si_s317	TRINITY_DN39143_c0_g1	1195	1217	1207	-33.10	-21.70	0.655589123867069	9.5	1-7,1217-1211;8-14,1209-1203;15-19,1201-1197	x-x,1210-1210[BULt];x-x,1202-1202[BULt];20-21,1196-1195[UP3]	..(((((.(((((((.(((((((&)))))))-)))))))-)))))..	GCUUGUGAACGAGAGCGGGCGGA&UCUGUCC-UUCUUGU-UACAAAC	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN39143_c0_g1_1207_TPlot.pdf
TRINITY_DN39143_c0_g1:1507	si_s376	TRINITY_DN39143_c0_g1	1491	1518	1507	-42.50	-28.30	0.665882352941176	13.5	1-6,1518-1513;7-13,1510-1504;14-18,1498-1494	x-x,1512-1511[BULt];x-x,1503-1499[BULt];19-21,1493-1491[UP3]	...(((((.....(((((((..((((((&))))))--)))))))-----)))))...	ACCGGCGGGGUCAGCACGCGCAGGCGAU&AUCGCU--CGCGUGU-----CCGCCUUA	0	0.217409372554825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN39143_c0_g1_1507_TPlot.pdf
TRINITY_DN39143_c0_g1:1508	si_s375	TRINITY_DN39143_c0_g1	1492	1519	1508	-44.10	-29.60	0.671201814058957	13	1-7,1519-1513;8-14,1510-1504;15-19,1498-1494	x-x,1512-1511[BULt];x-x,1503-1499[BULt];20-21,1493-1492[UP3]	..(((((.....(((((((..(((((((&)))))))--)))))))-----)))))..	CCGGCGGGGUCAGCACGCGCAGGCGAUU&GAUCGCU--CGCGUGU-----CCGCCUU	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN39143_c0_g1_1508_TPlot.pdf
TRINITY_DN39143_c0_g1:1509	si_s374	TRINITY_DN39143_c0_g1	1493	1521	1509	-45.60	-30.40	0.666666666666667	13.5	1-3,1521-1519;4-8,1517-1513;9-15,1510-1504;16-20,1498-1494	x-x,1518-1518[BULt];x-x,1512-1511[BULt];x-x,1503-1499[BULt];21-21,1493-1493[UP3]	.(((((.....(((((((..(((((.(((&)))-)))))--)))))))-----))))).	CGGCGGGGUCAGCACGCGCAGGCGAUUCG&CGA-UCGCU--CGCGUGU-----CCGCCU	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN39143_c0_g1_1509_TPlot.pdf
TRINITY_DN39143_c0_g1:153	si_a548	TRINITY_DN39143_c0_g1	141	162	153	-27.20	-17.80	0.654411764705882	10.5	2-3,161-160;6-13,157-150;14-21,148-141	1-1,162-162[UP5];4-5,159-158[SIL];x-x,149-149[BULt]	((((((((.((((((((..((.&.))..))))))))-))))))))	GAGAUAAGCGAGGUGGAGAGGG&UUCAAUCUAUUUC-UUUAUCUC	4	0.99998152635743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN39143_c0_g1_153_TPlot.pdf
TRINITY_DN39143_c0_g1:167	si_a332	TRINITY_DN39143_c0_g1	156	176	167	-30.60	-20.30	0.663398692810457	11	2-5,175-172;7-17,170-160	1-1,176-176[UP5];6-6,171-171[SIL];18-21,159-156[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	GAGAGGGACGAGGAGGAGGAC&UUUUUAUUCCUUGUCCCGAAA	4	0.999988508924018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN39143_c0_g1_167_TPlot.pdf
TRINITY_DN39143_c0_g1:3110	si_s85	TRINITY_DN39143_c0_g1	3099	3119	3110	-33.80	-22.20	0.656804733727811	11	6-8,3114-3112;10-21,3110-3099	1-5,3119-3115[UP5];9-9,3111-3111[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GCGAAGAAGAAGCAAGAACGG&CUUUCCUUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN39143_c0_g1_3110_TPlot.pdf
TRINITY_DN39145_c0_g1:952	si_a633	TRINITY_DN39145_c0_g1	941	961	952	-26.40	-17.70	0.670454545454545	6.5	2-9,960-953;11-19,951-943	1-1,961-961[UP5];10-10,952-952[SIL];20-21,942-941[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AUUUCAAAAAACUCGACGUAG&UUAUGUCGAUUUUUUUGAGUA	4	0.9999999816632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN39145_c0_g1_952_TPlot.pdf
TRINITY_DN39145_c0_g1:953	si_a632	TRINITY_DN39145_c0_g1	942	962	953	-26.10	-17.70	0.67816091954023	7.5	3-10,960-953;12-20,951-943	1-2,962-961[UP5];11-11,952-952[SIL];21-21,942-942[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UUUCAAAAAACUCGACGUAGA&AUUAUGUCGAUUUUUUUGAGU	4	0.99999918180225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN39145_c0_g1_953_TPlot.pdf
TRINITY_DN39146_c0_g1:283	si_s514	TRINITY_DN39146_c0_g1	271	292	283	-24.80	-16.32	0.658064516129032	9.5	1-12,292-281;16-19,276-273	13-15,280-277[AILt];20-21,272-271[UP3]	..((((....((((((((((((&))))))))))))-...))))..	CCUCGACCCGAAGAAUGUGGAG&UUCUAUAUUCUU-AAUUCGAAA	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN39146_c0_g1_283_TPlot.pdf
TRINITY_DN39146_c0_g1:570	si_s893	TRINITY_DN39146_c0_g1	559	579	570	-29.10	-19.60	0.673539518900344	11	4-14,576-566;16-18,564-562	1-3,579-577[UP5];15-15,565-565[SIL];19-21,561-559[UP3]	...(((.(((((((((((...&...))))))))))).)))...	GGCUGACGAGGAAGCCUGAAG&AAAUAGGCUUUCUCUUCAAUU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN39146_c0_g1_570_TPlot.pdf
TRINITY_DN39146_c0_g1:572	si_s891	TRINITY_DN39146_c0_g1	561	581	572	-29.60	-19.60	0.662162162162162	12.5	6-16,576-566;18-20,564-562	1-5,581-577[UP5];17-17,565-565[SIL];21-21,561-561[UP3]	.(((.(((((((((((.....&.....))))))))))).))).	CUGACGAGGAAGCCUGAAGCG&AUAAAUAGGCUUUCUCUUCAA	4	0.99998897367038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN39146_c0_g1_572_TPlot.pdf
TRINITY_DN39146_c0_g1:619	si_s583	TRINITY_DN39146_c0_g1	608	627	619	-24.30	-16.00	0.65843621399177	12.5	6-8,622-620;10-21,619-608	1-5,627-623[UP5];9-9,x-x[BULq]	((((((((((((-(((.....&.....))).))))))))))))	GAUUUGUCCGUG-UUUGUGUG&UAAAAAAAUCAUGGAUAAAUC	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s583_TRINITY_DN39146_c0_g1_619_TPlot.pdf
TRINITY_DN39148_c0_g1:2631	si_a647	TRINITY_DN39148_c0_g1	2620	2642	2631	-29.50	-20.10	0.68135593220339	12	3-7,2640-2636;8-17,2633-2624	1-2,2642-2641[UP5];x-x,2635-2634[BULt];18-21,2623-2620[UP3]	....((((((((((..(((((..&..)))))--))))))))))....	CCACCCCGAUAUAUCCUGCUCUG&UUGAGUA--AUAUAUCGGGAAAU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN39148_c0_g1_2631_TPlot.pdf
TRINITY_DN39149_c0_g1:351	si_s62	TRINITY_DN39149_c0_g1	340	360	351	-26.50	-18.90	0.713207547169811	5.5	2-3,359-358;5-14,356-347;16-21,345-340	1-1,360-360[UP5];4-4,357-357[SIL];15-15,346-346[SIL]	((((((.((((((((((.((.&.)).)))))))))).))))))	GAAGAGGAGAAGUUGCUUACA&AGUUAGCAACUUCUAUUUUUU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN39149_c0_g1_351_TPlot.pdf
TRINITY_DN39149_c0_g1:352	si_s61	TRINITY_DN39149_c0_g1	341	361	352	-26.50	-17.80	0.671698113207547	7	3-4,359-358;6-15,356-347;17-21,345-341	1-2,361-360[UP5];5-5,357-357[SIL];16-16,346-346[SIL]	(((((.((((((((((.((..&..)).)))))))))).)))))	AAGAGGAGAAGUUGCUUACAA&AAGUUAGCAACUUCUAUUUUU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN39149_c0_g1_352_TPlot.pdf
TRINITY_DN3914_c0_g1:239	si_a409	TRINITY_DN3914_c0_g1	228	248	239	-19.50	-12.80	0.656410256410256	8	1-2,248-247;4-18,245-231	3-3,246-246[SIL];19-21,230-228[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	AAUUUUAAAUAUAGAUAGUAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999999391901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3914_c0_g1_239_TPlot.pdf
TRINITY_DN3914_c0_g1:241	si_a407	TRINITY_DN3914_c0_g1	230	250	241	-19.80	-13.80	0.696969696969697	7	2-4,249-247;6-20,245-231	1-1,250-250[UP5];5-5,246-246[SIL];21-21,230-230[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	UUUUAAAUAUAGAUAGUACAU&UUGUUUUGUUUAUAUUUAAAU	4	0.999999999956687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3914_c0_g1_241_TPlot.pdf
TRINITY_DN3914_c0_g1:242	si_a406	TRINITY_DN3914_c0_g1	231	251	242	-19.80	-13.70	0.691919191919192	8	3-5,249-247;7-21,245-231	1-2,251-250[UP5];6-6,246-246[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UUUAAAUAUAGAUAGUACAUA&AUUGUUUUGUUUAUAUUUAAA	2	0.999999989085539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3914_c0_g1_242_TPlot.pdf
TRINITY_DN3914_c0_g1:394	si_a856	TRINITY_DN3914_c0_g1	381	403	394	-24.70	-17.00	0.688259109311741	7.5	2-12,402-392;14-20,388-382	1-1,403-403[UP5];13-13,391-389[AILt];21-21,381-381[UP3]	.(((((((...(((((((((((.&.)))))))))))--.))))))).	AUUAAUAGGACUGGAUUUCAAGC&ACUUGAAAUCCA--AUUAUUAAA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN3914_c0_g1_394_TPlot.pdf
TRINITY_DN3914_c0_g1:687	si_a496	TRINITY_DN3914_c0_g1	676	695	687	-32.40	-23.12	0.71358024691358	9.5	1-8,695-688;13-21,684-676	9-12,687-685[AILq]	(((((((((...-((((((((&))))))))....)))))))))	AGGAAGGCGUUU-AUGACAUA&UAUGUCGUUUUUCGUCUUCCU	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN3914_c0_g1_687_TPlot.pdf
TRINITY_DN39153_c0_g1:265	si_s621	TRINITY_DN39153_c0_g1	255	274	265	-32.50	-21.30	0.655384615384615	7	2-6,273-269;8-11,267-264;13-20,263-256	1-1,274-274[UP5];7-7,268-268[SIL];12-12,x-x[BULq];21-21,255-255[UP3]	.((((((((-((((.(((((.&.))))).)))).)))))))).	AAUGAAGAG-UCGCCUGGAUA&AAUCCAAGCGAUCUUUUCGUA	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN39153_c0_g1_265_TPlot.pdf
TRINITY_DN39153_c0_g1:443	si_s80	TRINITY_DN39153_c0_g1	431	460	443	-28.20	-18.60	0.659574468085106	20.5	1-7,460-454;8-12,445-441;13-21,439-431	x-x,453-446[BULt];x-x,440-440[BULt]	(((((((((.(((((........(((((((&)))))))--------)))))-)))))))))	GAGGAGGAGCAGGAAGCUCUCACAGAGAAA&UUUUUCU--------UUCCU-UUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN39153_c0_g1_443_TPlot.pdf
TRINITY_DN39154_c0_g1:1649	si_s634	TRINITY_DN39154_c0_g1	1637	1658	1649	-38.30	-26.10	0.681462140992167	9	3-7,1656-1652;9-13,1650-1646;14-21,1644-1637	1-2,1658-1657[UP5];8-8,1651-1651[SIL];x-x,1645-1645[BULt]	((((((((.(((((.(((((..&..))))).)))))-))))))))	GAGGGCAAUAUGCUGGCGAACA&UUUUCGUAGGCGU-UUGCCCUC	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN39154_c0_g1_1649_TPlot.pdf
TRINITY_DN39157_c0_g1:1108	si_s88	TRINITY_DN39157_c0_g1	1092	1117	1108	-34.80	-24.70	0.709770114942529	15	1-11,1117-1107;12-20,1101-1093	x-x,1106-1102[BULt];21-21,1092-1092[UP3]	.(((((((((.....(((((((((((&)))))))))))-----))))))))).	AGAGUGAAGAGGGCGAGGAGGAGGGA&UCCUUUCUUCU-----UCUUCGCUUC	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN39157_c0_g1_1108_TPlot.pdf
TRINITY_DN39157_c0_g1:2215	si_s191	TRINITY_DN39157_c0_g1	2204	2230	2215	-26.60	-18.00	0.676691729323308	19.5	3-9,2228-2222;10-20,2215-2205	1-2,2230-2229[UP5];x-x,2221-2216[BULt];21-21,2204-2204[UP3]	.(((((((((((......(((((((..&..)))))))------))))))))))).	AGCGUUCCGGAACAGAGCUGAUCGUGU&UAACGAUUA------UUUUGGAAUGUA	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN39157_c0_g1_2215_TPlot.pdf
TRINITY_DN39157_c0_g1:3100	si_a324	TRINITY_DN39157_c0_g1	3088	3109	3100	-27.50	-19.10	0.694545454545455	7.5	1-14,3109-3096;16-18,3093-3091	15-15,3095-3094[AILt];19-21,3090-3088[UP3]	...(((..((((((((((((((&))))))))))))))-.)))...	GCUGGACCUGAAAGGAUCAUGG&CCAUGAUUUUUUUA-UUCCUUG	2	0.961165445367016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN39157_c0_g1_3100_TPlot.pdf
TRINITY_DN39157_c0_g1:3101	si_a323	TRINITY_DN39157_c0_g1	3089	3110	3101	-26.80	-19.30	0.720149253731343	7	1-15,3110-3096;17-19,3093-3091	16-16,3095-3094[AILt];20-21,3090-3089[UP3]	..(((..(((((((((((((((&)))))))))))))))-.)))..	CUGGACCUGAAAGGAUCAUGGG&UCCAUGAUUUUUUUA-UUCCUU	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN39157_c0_g1_3101_TPlot.pdf
TRINITY_DN39157_c0_g1:3102	si_a322	TRINITY_DN39157_c0_g1	3090	3111	3102	-27.00	-20.60	0.762962962962963	6.5	1-16,3111-3096;18-20,3093-3091	17-17,3095-3094[AILt];21-21,3090-3090[UP3]	.(((..((((((((((((((((&))))))))))))))))-.))).	UGGACCUGAAAGGAUCAUGGGU&AUCCAUGAUUUUUUUA-UUCCU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN39157_c0_g1_3102_TPlot.pdf
TRINITY_DN39157_c0_g1:3103	si_a321	TRINITY_DN39157_c0_g1	3091	3112	3103	-26.70	-20.20	0.756554307116105	6.5	2-17,3111-3096;19-21,3093-3091	1-1,3112-3112[UP5];18-18,3095-3094[AILt]	(((..((((((((((((((((.&.))))))))))))))))-.)))	GGACCUGAAAGGAUCAUGGGUC&UAUCCAUGAUUUUUUUA-UUCC	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN39157_c0_g1_3103_TPlot.pdf
TRINITY_DN39157_c0_g1:3104	si_a320	TRINITY_DN39157_c0_g1	3093	3113	3104	-24.40	-17.70	0.725409836065574	9	3-18,3111-3096	1-2,3113-3112[UP5];19-21,3095-3093[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACCUGAAAGGAUCAUGGGUCU&UUAUCCAUGAUUUUUUUAUUC	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN39157_c0_g1_3104_TPlot.pdf
TRINITY_DN39157_c0_g1:3105	si_a319	TRINITY_DN39157_c0_g1	3094	3114	3105	-22.40	-17.70	0.790178571428571	9.5	4-19,3111-3096	1-3,3114-3112[UP5];20-21,3095-3094[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCUGAAAGGAUCAUGGGUCUC&UUUAUCCAUGAUUUUUUUAUU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN39157_c0_g1_3105_TPlot.pdf
TRINITY_DN39157_c0_g1:3107	si_a317	TRINITY_DN39157_c0_g1	3096	3116	3107	-24.30	-17.60	0.724279835390947	11.5	6-21,3111-3096	1-5,3116-3112[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGAAAGGAUCAUGGGUCUCUG&GAUUUAUCCAUGAUUUUUUUA	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN39157_c0_g1_3107_TPlot.pdf
TRINITY_DN39157_c0_g1:3153	si_s803	TRINITY_DN39157_c0_g1	3142	3162	3153	-26.00	-17.10	0.657692307692308	8	1-15,3162-3148;17-18,3146-3145	16-16,3147-3147[SIL];19-21,3144-3142[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UUCAGAUAACGAGGAUGAGGU&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN39157_c0_g1_3153_TPlot.pdf
TRINITY_DN39157_c0_g1:3159	si_s797	TRINITY_DN39157_c0_g1	3148	3171	3159	-30.00	-19.60	0.653333333333333	9.5	1-2,3171-3170;3-4,3168-3167;5-6,3165-3164;7-21,3162-3148	x-x,3169-3169[BULt];x-x,3166-3166[BULt];x-x,3163-3163[BULt]	(((((((((((((((.((.((.((&))-))-))-)))))))))))))))	UAACGAGGAUGAGGUCACAGAUGC&GC-UC-GU-AUUUUAUCUUCGUUA	2	0.999995490125337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN39157_c0_g1_3159_TPlot.pdf
TRINITY_DN39157_c0_g1:3199	si_s898	TRINITY_DN39157_c0_g1	3188	3208	3199	-30.70	-20.88	0.680130293159609	7	1-12,3208-3197;16-19,3193-3190	13-15,3196-3194[SIL];20-21,3189-3188[UP3]	..((((...((((((((((((&))))))))))))...))))..	GAUGAAUUGGAAGGGAAAGUC&GGCUUUCUCUUCAAUUUCAAU	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN39157_c0_g1_3199_TPlot.pdf
TRINITY_DN39157_c0_g1:3200	si_s897	TRINITY_DN39157_c0_g1	3189	3209	3200	-31.30	-20.88	0.667092651757188	7	2-13,3208-3197;17-20,3193-3190	1-1,3209-3209[UP5];14-16,3196-3194[SIL];21-21,3189-3189[UP3]	.((((...((((((((((((.&.))))))))))))...)))).	AUGAAUUGGAAGGGAAAGUCG&AGGCUUUCUCUUCAAUUUCAA	3	0.999997049065349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN39157_c0_g1_3200_TPlot.pdf
TRINITY_DN39157_c0_g1:3201	si_s896	TRINITY_DN39157_c0_g1	3190	3210	3201	-31.60	-20.68	0.654430379746835	8	3-14,3208-3197;18-21,3193-3190	1-2,3210-3209[UP5];15-17,3196-3194[SIL]	((((...((((((((((((..&..))))))))))))...))))	UGAAUUGGAAGGGAAAGUCGA&UAGGCUUUCUCUUCAAUUUCA	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN39157_c0_g1_3201_TPlot.pdf
TRINITY_DN39157_c0_g1:3203	si_s894	TRINITY_DN39157_c0_g1	3191	3212	3203	-29.10	-19.10	0.656357388316151	10.5	5-16,3208-3197;17-21,3195-3191	1-4,3212-3209[UP5];x-x,3196-3196[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GAAUUGGAAGGGAAAGUCGACA&AAUAGGCUUUCUCUUC-AAUUU	3	0.999999999045851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN39157_c0_g1_3203_TPlot.pdf
TRINITY_DN39157_c0_g1:3254	si_a303	TRINITY_DN39157_c0_g1	3243	3263	3254	-28.40	-21.00	0.73943661971831	12	5-13,3259-3251;15-19,3249-3245	1-4,3263-3260[UP5];14-14,3250-3250[SIL];20-21,3244-3243[UP3]	..(((((.(((((((((....&....))))))))).)))))..	AAGAAUCGGAGCGAGUCAAGC&AAAAGAUUCGCUUGGAUUUAU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN39157_c0_g1_3254_TPlot.pdf
TRINITY_DN39157_c0_g1:623	si_s216	TRINITY_DN39157_c0_g1	612	632	623	-35.80	-24.60	0.687150837988827	8.5	1-4,632-629;6-17,627-616	5-5,628-628[SIL];18-21,615-612[UP3]	....((((((((((((.((((&)))).))))))))))))....	CAGCCGUGGUUUCGAGGGCAA&UUGUGUUCGAAACCGCGUGAA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN39157_c0_g1_623_TPlot.pdf
TRINITY_DN39159_c0_g1:2142	si_a627	TRINITY_DN39159_c0_g1	2132	2152	2142	-29.50	-19.60	0.664406779661017	9.5	1-8,2152-2145;9-14,2143-2138;16-19,2137-2134	x-x,2144-2144[BULt];15-15,x-x[BULq];20-21,2133-2132[UP3]	..((((-((((((.((((((((&))))))))-)))))).))))..	CCAAGA-CGGCGUAGAUGCGCC&GGCGUAUU-AUGUCGAUUUUUU	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN39159_c0_g1_2142_TPlot.pdf
TRINITY_DN3915_c0_g1:1524	si_a76	TRINITY_DN3915_c0_g1	1512	1533	1524	-21.20	-14.50	0.683962264150943	7.5	1-10,1533-1524;11-20,1522-1513	x-x,1523-1523[BULt];21-21,1512-1512[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	AUUAAUGAUGACGAGAUAGUUU&AAAUUGUUUU-UCAUUAUUAAG	4	0.999999973411668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN3915_c0_g1_1524_TPlot.pdf
TRINITY_DN39162_c0_g1:524	si_s745	TRINITY_DN39162_c0_g1	513	533	524	-28.90	-18.90	0.653979238754325	10	4-18,530-516	1-3,533-531[UP5];19-21,515-513[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAGUUUGGGGUCAAUCUGAAA&GAAUAGAUUGACCUUAAAACA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s745_TRINITY_DN39162_c0_g1_524_TPlot.pdf
TRINITY_DN39162_c0_g1:525	si_s744	TRINITY_DN39162_c0_g1	514	534	525	-28.90	-18.90	0.653979238754325	11	5-19,530-516	1-4,534-531[UP5];20-21,515-514[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGUUUGGGGUCAAUCUGAAAC&UGAAUAGAUUGACCUUAAAAC	0	0.0425921873160006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s744_TRINITY_DN39162_c0_g1_525_TPlot.pdf
TRINITY_DN39162_c0_g1:526	si_s743	TRINITY_DN39162_c0_g1	515	536	526	-29.00	-20.90	0.720689655172414	9	1-3,536-534;6-20,530-516	4-5,533-531[AILt];21-21,515-515[UP3]	.(((((((((((((((...(((&)))-..))))))))))))))).	GUUUGGGGUCAAUCUGAAACAC&GUG-AAUAGAUUGACCUUAAAA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN39162_c0_g1_526_TPlot.pdf
TRINITY_DN39162_c0_g1:527	si_s742	TRINITY_DN39162_c0_g1	516	537	527	-31.40	-24.60	0.78343949044586	8	1-4,537-534;7-21,530-516	5-6,533-531[AILt]	(((((((((((((((...((((&))))-..)))))))))))))))	UUUGGGGUCAAUCUGAAACACC&GGUG-AAUAGAUUGACCUUAAA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN39162_c0_g1_527_TPlot.pdf
TRINITY_DN39162_c0_g1:528	si_s741	TRINITY_DN39162_c0_g1	517	538	528	-33.80	-24.00	0.710059171597633	9	2-5,537-534;8-21,530-517	1-1,538-538[UP5];6-7,533-531[AILt]	((((((((((((((...((((.&.))))-..))))))))))))))	UUGGGGUCAAUCUGAAACACCG&GGGUG-AAUAGAUUGACCUUAA	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN39162_c0_g1_528_TPlot.pdf
TRINITY_DN39165_c0_g1:1695	si_a413	TRINITY_DN39165_c0_g1	1684	1704	1695	-18.40	-12.60	0.684782608695652	9	1-16,1704-1689	17-21,1688-1684[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAACUAUUUGGAUAUAGAUA&UGUUUAUAUUUAAAUAAAUAU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN39165_c0_g1_1695_TPlot.pdf
TRINITY_DN39165_c0_g1:1696	si_a412	TRINITY_DN39165_c0_g1	1685	1705	1696	-18.30	-12.70	0.693989071038251	9	2-17,1704-1689	1-1,1705-1705[UP5];18-21,1688-1685[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAACUAUUUGGAUAUAGAUAC&UUGUUUAUAUUUAAAUAAAUA	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN39165_c0_g1_1696_TPlot.pdf
TRINITY_DN39165_c0_g1:1697	si_a411	TRINITY_DN39165_c0_g1	1686	1706	1697	-17.90	-12.70	0.709497206703911	9.5	3-18,1704-1689	1-2,1706-1705[UP5];19-21,1688-1686[UP3]	...((((((((((((((((..&..))))))))))))))))...	AACUAUUUGGAUAUAGAUACU&UUUGUUUAUAUUUAAAUAAAU	4	0.999927850476115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN39165_c0_g1_1697_TPlot.pdf
TRINITY_DN39165_c0_g1:1698	si_a410	TRINITY_DN39165_c0_g1	1687	1707	1698	-17.80	-12.70	0.713483146067416	10	4-19,1704-1689	1-3,1707-1705[UP5];20-21,1688-1687[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUAUUUGGAUAUAGAUACUG&UUUUGUUUAUAUUUAAAUAAA	2	0.999012228093801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN39165_c0_g1_1698_TPlot.pdf
TRINITY_DN39165_c0_g1:1699	si_a409	TRINITY_DN39165_c0_g1	1688	1708	1699	-19.50	-12.70	0.651282051282051	11	5-20,1704-1689	1-4,1708-1705[UP5];21-21,1688-1688[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUAUUUGGAUAUAGAUACUGA&GUUUUGUUUAUAUUUAAAUAA	2	0.999999999937654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN39165_c0_g1_1699_TPlot.pdf
TRINITY_DN39165_c0_g1:190	si_a886	TRINITY_DN39165_c0_g1	179	199	190	-25.30	-19.80	0.782608695652174	7.5	1-7,199-193;10-19,190-181	8-9,192-191[SIL];20-21,180-179[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	CCUUAUUGCUAUUGUGGUUGC&GCAAUCAAUAUAGUAAUAAUA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a886_TRINITY_DN39165_c0_g1_190_TPlot.pdf
TRINITY_DN39165_c0_g1:192	si_a884	TRINITY_DN39165_c0_g1	181	201	192	-25.60	-20.90	0.81640625	6.5	2-9,200-193;12-21,190-181	1-1,201-201[UP5];10-11,192-191[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	UUAUUGCUAUUGUGGUUGCAG&UUGCAAUCAAUAUAGUAAUAA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN39165_c0_g1_192_TPlot.pdf
TRINITY_DN39165_c0_g1:610	si_a347	TRINITY_DN39165_c0_g1	599	619	610	-23.50	-17.30	0.736170212765958	8.5	1-6,619-614;9-19,611-601	7-8,613-612[SIL];20-21,600-599[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	UUAUAGAGUUGGUCCUUUCGG&CCGAAAAUAUUAAUUCUAUUU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN39165_c0_g1_610_TPlot.pdf
TRINITY_DN39165_c0_g1:611	si_a346	TRINITY_DN39165_c0_g1	600	620	611	-25.90	-17.70	0.683397683397683	8.5	2-7,619-614;10-20,611-601	1-1,620-620[UP5];8-9,613-612[SIL];21-21,600-600[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	UAUAGAGUUGGUCCUUUCGGA&CCCGAAAAUAUUAAUUCUAUU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN39165_c0_g1_611_TPlot.pdf
TRINITY_DN39165_c0_g1:612	si_a345	TRINITY_DN39165_c0_g1	601	621	612	-26.90	-17.70	0.657992565055762	9	3-8,619-614;11-21,611-601	1-2,621-620[UP5];9-10,613-612[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	AUAGAGUUGGUCCUUUCGGAU&UCCCGAAAAUAUUAAUUCUAU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN39165_c0_g1_612_TPlot.pdf
TRINITY_DN39165_c0_g1:843	si_a668	TRINITY_DN39165_c0_g1	832	856	843	-33.20	-25.10	0.756024096385542	11.5	1-4,856-853;5-14,848-839;16-21,837-832	x-x,852-849[BULt];15-15,838-838[SIL]	((((((.((((((((((....((((&))))----)))))))))).))))))	GUGGAUCAGGAAUCAGUAACUGGGC&GCCU----AUUGAUUCCUUAUUCAC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN39165_c0_g1_843_TPlot.pdf
TRINITY_DN39167_c0_g1:1511	si_a756	TRINITY_DN39167_c0_g1	1499	1526	1511	-33.10	-21.90	0.661631419939577	19.5	3-9,1524-1518;10-18,1511-1503;19-20,1501-1500	1-2,1526-1525[UP5];x-x,1517-1512[BULt];x-x,1502-1502[BULt];21-21,1499-1499[UP3]	.((.(((((((((......(((((((..&..)))))))------)))))))))-)).	UUCGGAGAGCCCAUCAAACGAGGAGGGC&AACCUCCUU------UGGGUUUUU-GAU	4	0.999999993331237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN39167_c0_g1_1511_TPlot.pdf
TRINITY_DN39167_c0_g1:1603	si_s741	TRINITY_DN39167_c0_g1	1592	1610	1603	-33.80	-25.90	0.766272189349112	6.5	1-5,1610-1606;8-19,1605-1594	6-7,x-x[BULq];20-21,1593-1592[UP3]	..((((((((((((--(((((&)))))..))))))))))))..	AAAGGGUCAAUCUA--CACCC&GGGUGAAUAGAUUGACCUUAA	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN39167_c0_g1_1603_TPlot.pdf
TRINITY_DN39167_c0_g1:1604	si_s740	TRINITY_DN39167_c0_g1	1593	1611	1604	-35.20	-27.60	0.784090909090909	5.5	1-6,1611-1606;9-20,1605-1594	7-8,x-x[BULq];21-21,1593-1593[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	AAGGGUCAAUCUA--CACCCG&CGGGUGAAUAGAUUGACCUUA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN39167_c0_g1_1604_TPlot.pdf
TRINITY_DN39167_c0_g1:1605	si_s739	TRINITY_DN39167_c0_g1	1594	1612	1605	-35.60	-28.80	0.808988764044944	4.5	1-7,1612-1606;10-21,1605-1594	8-9,x-x[BULq]	((((((((((((--(((((((&)))))))..))))))))))))	AGGGUCAAUCUA--CACCCGU&ACGGGUGAAUAGAUUGACCUU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN39167_c0_g1_1605_TPlot.pdf
TRINITY_DN39167_c0_g1:1736	si_s91	TRINITY_DN39167_c0_g1	1722	1745	1736	-34.70	-23.00	0.662824207492795	8	2-13,1744-1733;14-18,1729-1725;20-20,1723-1723	1-1,1745-1745[UP5];x-x,1732-1730[BULt];19-19,1724-1724[SIL];21-21,1722-1722[UP3]	.(.(((((...((((((((((((.&.))))))))))))---))))).).	GCGGAAGCACCGAAGGAGAAGGAU&UUUCUUCUUCUUC---GCUUCGGA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN39167_c0_g1_1736_TPlot.pdf
TRINITY_DN3916_c0_g1:277	si_s323	TRINITY_DN3916_c0_g1	266	286	277	-30.10	-19.90	0.661129568106312	6	1-2,286-285;4-17,283-270;20-21,267-266	3-3,284-284[SIL];18-19,269-268[SIL]	((..((((((((((((((.((&)).))))))))))))))..))	UCUGAUGUUUGUGACAAGUGG&CUUCUUGUUACAAACAUACGA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s323_TRINITY_DN3916_c0_g1_277_TPlot.pdf
TRINITY_DN39173_c0_g1:125	si_a316	TRINITY_DN39173_c0_g1	114	134	125	-26.30	-17.20	0.653992395437262	9	1-12,134-123	13-21,122-114[UP3]	.........((((((((((((&)))))))))))).........	AUUGUAAAAAUGGAUAAAUCC&GGAUUUAUCCAUGAUUUUUUU	2	0.999994215439769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN39173_c0_g1_125_TPlot.pdf
TRINITY_DN39173_c0_g1:841	si_s84	TRINITY_DN39173_c0_g1	830	851	841	-32.30	-23.60	0.730650154798762	7	1-6,851-846;7-14,844-837;16-20,835-831	x-x,845-845[BULt];15-15,836-836[SIL];21-21,830-830[UP3]	.(((((.((((((((.((((((&))))))-)))))))).))))).	AGAAGAUGAGGAAGGUGAAGGA&UCUUUC-CUUUCUUCUUCUUCG	4	0.999998837853321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN39173_c0_g1_841_TPlot.pdf
TRINITY_DN39173_c0_g1:843	si_s77	TRINITY_DN39173_c0_g1	831	852	843	-25.50	-18.80	0.737254901960784	8	1-7,852-846;9-16,844-837;17-21,835-831	8-8,845-845[SIL];x-x,836-836[BULt]	(((((.((((((((.(((((((&))))))).))))))))-)))))	GAAGAUGAGGAAGGUGAAGGAG&UUUUUUUUCUUUCCUU-UCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN39173_c0_g1_843_TPlot.pdf
TRINITY_DN3917_c0_g1:1887	si_a141	TRINITY_DN3917_c0_g1	1876	1896	1887	-23.80	-15.60	0.65546218487395	15.5	8-21,1889-1876	1-7,1896-1890[UP5]	((((((((((((((.......&.......))))))))))))))	UAAGGCAGCAAUGAAUUCGAA&UAAUUAAUCGUUGUUGUUUUA	3	0.99999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN3917_c0_g1_1887_TPlot.pdf
TRINITY_DN3917_c0_g1:2175	si_a765	TRINITY_DN3917_c0_g1	2164	2184	2175	-30.50	-19.90	0.652459016393443	6.5	2-6,2183-2179;8-20,2177-2165	1-1,2184-2184[UP5];7-7,2178-2178[SIL];21-21,2164-2164[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UUUGAAUUAAUCAAUGACUCU&UGGGUUUUUGAUUGAUUCAAC	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN3917_c0_g1_2175_TPlot.pdf
TRINITY_DN3917_c0_g1:2177	si_a763	TRINITY_DN3917_c0_g1	2166	2186	2177	-28.80	-19.00	0.659722222222222	9.5	4-8,2183-2179;10-21,2177-2166	1-3,2186-2184[UP5];9-9,2178-2178[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UGAAUUAAUCAAUGACUCUAU&UUUGGGUUUUUGAUUGAUUCA	4	0.999999999733605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN3917_c0_g1_2177_TPlot.pdf
TRINITY_DN3917_c0_g1:2729	si_a404	TRINITY_DN3917_c0_g1	2719	2738	2729	-21.70	-16.40	0.755760368663594	5.5	1-12,2738-2727;15-20,2725-2720	13-14,2726-2726[AILq];21-21,2719-2719[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	AAGAUAUC-GCAAAACAGUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3917_c0_g1_2729_TPlot.pdf
TRINITY_DN39183_c0_g1:1816	si_s663	TRINITY_DN39183_c0_g1	1805	1825	1816	-34.80	-22.70	0.652298850574713	7	1-3,1825-1823;5-14,1821-1812;16-18,1810-1808	4-4,1822-1822[SIL];15-15,1811-1811[SIL];19-21,1807-1805[UP3]	...(((.((((((((((.(((&))).)))))))))).)))...	AACAAUGAAUUUGAUCCGCCG&CGGGGGAUCGAAUUGAUUAUA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s663_TRINITY_DN39183_c0_g1_1816_TPlot.pdf
TRINITY_DN39183_c0_g1:1817	si_s662	TRINITY_DN39183_c0_g1	1806	1826	1817	-35.40	-24.30	0.686440677966102	6	1-4,1826-1823;6-15,1821-1812;17-19,1810-1808	5-5,1822-1822[SIL];16-16,1811-1811[SIL];20-21,1807-1806[UP3]	..(((.((((((((((.((((&)))).)))))))))).)))..	ACAAUGAAUUUGAUCCGCCGA&UCGGGGGAUCGAAUUGAUUAU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN39183_c0_g1_1817_TPlot.pdf
TRINITY_DN39183_c0_g1:1818	si_s661	TRINITY_DN39183_c0_g1	1807	1827	1818	-35.40	-24.30	0.686440677966102	6	2-5,1826-1823;7-16,1821-1812;18-20,1810-1808	1-1,1827-1827[UP5];6-6,1822-1822[SIL];17-17,1811-1811[SIL];21-21,1807-1807[UP3]	.(((.((((((((((.((((.&.)))).)))))))))).))).	CAAUGAAUUUGAUCCGCCGAG&AUCGGGGGAUCGAAUUGAUUA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN39183_c0_g1_1818_TPlot.pdf
TRINITY_DN3918_c0_g1:1226	si_s85	TRINITY_DN3918_c0_g1	1212	1235	1226	-33.80	-23.22	0.68698224852071	9.5	1-13,1235-1223;16-21,1217-1212	14-15,1222-1218[AILt]	((((((.....(((((((((((((&)))))))))))))---..))))))	GUGAAGCUGAUGGAGGGAGGAGAG&CUUUCCUUUCUUC---UUCUUCGC	4	0.999999999961732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3918_c0_g1_1226_TPlot.pdf
TRINITY_DN3918_c0_g1:606	si_s199	TRINITY_DN3918_c0_g1	594	615	606	-31.20	-20.40	0.653846153846154	11.5	4-6,612-610;9-18,607-598;19-21,596-594	1-3,615-613[UP5];7-8,609-608[SIL];x-x,597-597[BULt]	(((.((((((((((..(((...&...)))..))))))))))-)))	GCAGACUGGUGCAUGACAAUGA&AUUUUGGAAUGUACCAGU-UGU	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN3918_c0_g1_606_TPlot.pdf
TRINITY_DN39190_c0_g1:1023	si_s207	TRINITY_DN39190_c0_g1	1012	1032	1023	-33.00	-22.30	0.675757575757576	7.5	2-7,1031-1026;9-19,1024-1014	1-1,1032-1032[UP5];8-8,1025-1025[SIL];20-21,1013-1012[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AGUUGGACGCAAUCGGUACAA&AUGUACCAGUUGUGUUCGAAA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN39190_c0_g1_1023_TPlot.pdf
TRINITY_DN39190_c0_g1:1024	si_s206	TRINITY_DN39190_c0_g1	1013	1033	1024	-33.00	-22.30	0.675757575757576	8.5	3-8,1031-1026;10-20,1024-1014	1-2,1033-1032[UP5];9-9,1025-1025[SIL];21-21,1013-1013[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	GUUGGACGCAAUCGGUACAAA&AAUGUACCAGUUGUGUUCGAA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN39190_c0_g1_1024_TPlot.pdf
TRINITY_DN39190_c0_g1:316	si_a79	TRINITY_DN39190_c0_g1	305	325	316	-22.20	-15.30	0.689189189189189	7	1-15,325-311;18-19,308-307	16-17,310-309[SIL];20-21,306-305[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	AAUCAAAAUAAUGAAGAGCGA&UUGUUUUUCAUUAUUAAGAAA	2	0.998668369541685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN39190_c0_g1_316_TPlot.pdf
TRINITY_DN39190_c0_g1:317	si_a78	TRINITY_DN39190_c0_g1	306	326	317	-22.30	-15.30	0.68609865470852	7	2-16,325-311;19-20,308-307	1-1,326-326[UP5];17-18,310-309[SIL];21-21,306-306[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	AUCAAAAUAAUGAAGAGCGAA&AUUGUUUUUCAUUAUUAAGAA	3	0.999992202311982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN39190_c0_g1_317_TPlot.pdf
TRINITY_DN39190_c0_g1:318	si_a77	TRINITY_DN39190_c0_g1	307	327	318	-22.20	-15.10	0.68018018018018	8	3-17,325-311;20-21,308-307	1-2,327-326[UP5];18-19,310-309[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	UCAAAAUAAUGAAGAGCGAAG&AAUUGUUUUUCAUUAUUAAGA	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN39190_c0_g1_318_TPlot.pdf
TRINITY_DN39190_c0_g1:319	si_a76	TRINITY_DN39190_c0_g1	308	328	319	-21.20	-15.10	0.712264150943396	11	4-18,325-311	1-3,328-326[UP5];19-21,310-308[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAAAAUAAUGAAGAGCGAAGU&AAAUUGUUUUUCAUUAUUAAG	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN39190_c0_g1_319_TPlot.pdf
TRINITY_DN39190_c0_g1:320	si_a75	TRINITY_DN39190_c0_g1	309	329	320	-21.30	-15.10	0.708920187793427	12	5-19,325-311	1-4,329-326[UP5];20-21,310-309[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAUAAUGAAGAGCGAAGUA&CAAAUUGUUUUUCAUUAUUAA	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN39190_c0_g1_320_TPlot.pdf
TRINITY_DN39190_c0_g1:321	si_a74	TRINITY_DN39190_c0_g1	310	330	321	-22.20	-15.10	0.68018018018018	13	6-20,325-311	1-5,330-326[UP5];21-21,310-310[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAUAAUGAAGAGCGAAGUAA&UCAAAUUGUUUUUCAUUAUUA	3	0.999999907410385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN39190_c0_g1_321_TPlot.pdf
TRINITY_DN39190_c0_g1:322	si_a73	TRINITY_DN39190_c0_g1	311	331	322	-21.90	-14.80	0.675799086757991	14	7-21,325-311	1-6,331-326[UP5]	(((((((((((((((......&......)))))))))))))))	AAUAAUGAAGAGCGAAGUAAU&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999045851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN39190_c0_g1_322_TPlot.pdf
TRINITY_DN39190_c0_g1:323	si_a72	TRINITY_DN39190_c0_g1	312	335	323	-21.90	-15.02	0.685844748858447	13.5	1-5,335-331;8-21,325-312	6-7,330-326[AILt]	((((((((((((((.....(((((&)))))---..))))))))))))))	AUAAUGAAGAGCGAAGUAAUGAGA&UUUCA---AAUUGUUUUUCAUUAU	3	0.99999998673981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN39190_c0_g1_323_TPlot.pdf
TRINITY_DN39190_c0_g1:606	si_s25	TRINITY_DN39190_c0_g1	595	615	606	-27.10	-17.70	0.653136531365314	9	3-8,613-608;10-19,606-597	1-2,615-614[UP5];9-9,607-607[SIL];20-21,596-595[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	GUGAUUUAGUUGGAGUUAACA&UAUUGAUUGCAACUAAAUCUU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN39190_c0_g1_606_TPlot.pdf
TRINITY_DN39190_c0_g1:931	si_a203	TRINITY_DN39190_c0_g1	916	940	931	-26.90	-18.28	0.679553903345725	11	1-12,940-929;14-21,923-916	13-13,928-924[AILt]	((((((((.....((((((((((((&))))))))))))----.))))))))	AAUUAGUCCAGAUGUUUAUUGGUGA&UCACUAAUAAAU----CGACUAAUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN39190_c0_g1_931_TPlot.pdf
TRINITY_DN39190_c0_g1:932	si_a202	TRINITY_DN39190_c0_g1	917	941	932	-27.00	-17.58	0.651111111111111	7.5	2-13,940-929;15-21,923-917	1-1,941-941[UP5];14-14,928-924[AILt]	(((((((.....((((((((((((.&.))))))))))))----.)))))))	AUUAGUCCAGAUGUUUAUUGGUGAC&UUCACUAAUAAAU----CGACUAAU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN39190_c0_g1_932_TPlot.pdf
TRINITY_DN3919_c0_g2:1306	si_s77	TRINITY_DN3919_c0_g2	1295	1316	1306	-25.50	-16.80	0.658823529411765	8	1-8,1316-1309;9-18,1307-1298	x-x,1308-1308[BULt];19-21,1297-1295[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	CACGAAGGGGAGGCAAAAAAAG&UUUUUUUU-CUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3919_c0_g2_1306_TPlot.pdf
TRINITY_DN39202_c0_g1:2231	si_a673	TRINITY_DN39202_c0_g1	2220	2240	2231	-34.80	-23.70	0.681034482758621	10.5	4-18,2237-2223	1-3,2240-2238[UP5];19-21,2222-2220[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUGGCGUGGAUGAGGGAUAUA&UUGAUUCCUUAUUCACGCGGU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a673_TRINITY_DN39202_c0_g1_2231_TPlot.pdf
TRINITY_DN39202_c0_g1:3288	si_s61	TRINITY_DN39202_c0_g1	3277	3297	3288	-26.50	-17.60	0.664150943396226	12	3-15,3295-3283	1-2,3297-3296[UP5];16-21,3282-3277[UP3]	......(((((((((((((..&..)))))))))))))......	UUAAUAAGAAGUUGUUGGCGU&AAGUUAGCAACUUCUAUUUUU	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN39202_c0_g1_3288_TPlot.pdf
TRINITY_DN39203_c0_g1:136	si_s86	TRINITY_DN39203_c0_g1	125	145	136	-32.90	-24.90	0.756838905775076	7	2-5,144-141;7-21,139-125	1-1,145-145[UP5];6-6,140-140[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AGUGGAGAAGAAGAGUGGGGU&UUUCCUUUCUUCUUCUUCGCU	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN39203_c0_g1_136_TPlot.pdf
TRINITY_DN39203_c0_g1:138	si_a777	TRINITY_DN39203_c0_g1	128	147	138	-27.00	-17.90	0.662962962962963	6.5	1-6,147-142;8-15,140-133;17-21,132-128	7-7,141-141[SIL];16-16,x-x[BULq]	(((((-((((((((.((((((&)))))).)))))))).)))))	GGAGA-AGAAGAGUGGGGUCA&UGAUUCAACUCUUCUAUUUUU	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN39203_c0_g1_138_TPlot.pdf
TRINITY_DN3920_c0_g1:141	si_s770	TRINITY_DN3920_c0_g1	129	149	141	-26.60	-17.30	0.650375939849624	7.5	2-6,148-144;8-10,143-141;11-20,139-130	1-1,149-149[UP5];7-7,x-x[BULq];x-x,140-140[BULt];21-21,129-129[UP3]	.((((((((((.(((-(((((.&.))))).)))-)))))))))).	GGUAGCAAUAGCUGA-UAAUCU&CGAUUAAUUA-CUAUUGCUAUA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN3920_c0_g1_141_TPlot.pdf
TRINITY_DN39210_c0_g1:1144	si_s489	TRINITY_DN39210_c0_g1	1134	1153	1144	-17.90	-12.60	0.70391061452514	3	1-16,1153-1138;18-19,1137-1136	17-17,x-x[BULq];20-21,1135-1134[UP3]	..((-((((((((((((((((&)))))))))))))))).))..	UAUG-UUAUAUUUAAAUAAAU&AUUUAUUUAAAUAUAAACAAA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN39210_c0_g1_1144_TPlot.pdf
TRINITY_DN39210_c0_g1:1145	si_s488	TRINITY_DN39210_c0_g1	1135	1154	1145	-18.30	-12.60	0.688524590163934	3	2-17,1153-1138;19-20,1137-1136	1-1,1154-1154[UP5];18-18,x-x[BULq];21-21,1135-1135[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	AUG-UUAUAUUUAAAUAAAUU&UAUUUAUUUAAAUAUAAACAA	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN39210_c0_g1_1145_TPlot.pdf
TRINITY_DN39210_c0_g1:1148	si_s485	TRINITY_DN39210_c0_g1	1137	1157	1148	-18.10	-12.10	0.668508287292818	8	5-20,1153-1138	1-4,1157-1154[UP5];21-21,1137-1137[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUUAUAUUUAAAUAAAUUCAU&CUAUAUUUAUUUAAAUAUAAA	4	0.999972084218589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN39210_c0_g1_1148_TPlot.pdf
TRINITY_DN39215_c0_g1:407	si_a572	TRINITY_DN39215_c0_g1	397	417	407	-30.40	-20.50	0.674342105263158	6.5	1-7,417-411;8-16,409-401;18-20,400-398	x-x,410-410[BULt];17-17,x-x[BULq];21-21,397-397[UP3]	.(((-(((((((((.(((((((&)))))))-))))))))).))).	CGUU-CAGACAUAUAGAUUCGC&GUGAAUC-GUAUGUUUGUAACA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN39215_c0_g1_407_TPlot.pdf
TRINITY_DN3921_c0_g1:1008	si_s629	TRINITY_DN3921_c0_g1	997	1017	1008	-34.60	-26.70	0.771676300578035	8	1-1,1017-1017;3-17,1015-1001	2-2,1016-1016[SIL];18-21,1000-997[UP3]	....(((((((((((((((.(&).)))))))))))))))....	ACGCCGCCUGCGAAGAGAUGG&CGAUCUUUUCGUAGGCGUUUG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN3921_c0_g1_1008_TPlot.pdf
TRINITY_DN3921_c0_g1:1011	si_s626	TRINITY_DN3921_c0_g1	1000	1020	1011	-36.10	-32.30	0.894736842105263	5.5	2-4,1019-1017;6-20,1015-1001	1-1,1020-1020[UP5];5-5,1016-1016[SIL];21-21,1000-1000[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	CCGCCUGCGAAGAGAUGGCUG&AAGCGAUCUUUUCGUAGGCGU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3921_c0_g1_1011_TPlot.pdf
TRINITY_DN3921_c0_g1:1015	si_s622	TRINITY_DN3921_c0_g1	1004	1026	1015	-34.20	-23.40	0.684210526315789	9	1-3,1026-1024;4-4,1022-1022;6-8,1019-1017;10-21,1015-1004	x-x,1023-1023[BULt];5-5,1021-1020[AILt];9-9,1016-1016[SIL]	((((((((((((.(((..(.(((&)))-)-.))).))))))))))))	CUGCGAAGAGAUGGCUGCGAGAU&AUC-C-AAGCGAUCUUUUCGUAG	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN3921_c0_g1_1015_TPlot.pdf
TRINITY_DN3921_c0_g1:1381	si_s797	TRINITY_DN3921_c0_g1	1370	1389	1381	-30.00	-20.10	0.67	13.5	1-7,1389-1383;13-19,1378-1372	8-12,1382-1379[AILq];20-21,1371-1370[UP3]	..(((((((....-(((((((&))))))).....)))))))..	UCGCGAAGACGCU-UGCGAGC&GCUCGUAUUUUAUCUUCGUUA	2	0.999818223926229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3921_c0_g1_1381_TPlot.pdf
TRINITY_DN3921_c0_g1:1382	si_s796	TRINITY_DN3921_c0_g1	1371	1390	1382	-30.30	-20.20	0.666666666666667	12.5	2-8,1389-1383;14-20,1378-1372	1-1,1390-1390[UP5];9-13,1382-1379[AILq];21-21,1371-1371[UP3]	.(((((((....-(((((((.&.))))))).....))))))).	CGCGAAGACGCU-UGCGAGCA&AGCUCGUAUUUUAUCUUCGUU	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN3921_c0_g1_1382_TPlot.pdf
TRINITY_DN3921_c0_g1:1383	si_s795	TRINITY_DN3921_c0_g1	1372	1391	1383	-30.30	-20.20	0.666666666666667	12.5	3-9,1389-1383;15-21,1378-1372	1-2,1391-1390[UP5];10-14,1382-1379[AILq]	(((((((....-(((((((..&..))))))).....)))))))	GCGAAGACGCU-UGCGAGCAG&AAGCUCGUAUUUUAUCUUCGU	2	0.998016861159279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN3921_c0_g1_1383_TPlot.pdf
TRINITY_DN3921_c0_g1:1385	si_s630	TRINITY_DN3921_c0_g1	1372	1395	1385	-35.60	-23.30	0.654494382022472	9.5	2-6,1394-1390;7-18,1388-1377;19-21,1374-1372	1-1,1395-1395[UP5];x-x,1389-1389[BULt];x-x,1376-1375[BULt]	(((..((((((((((((.(((((.&.)))))-))))))))))))--)))	GCGAAGACGCUUGCGAGCAGGAUG&GAUCUU-UUCGUAGGCGUU--UGC	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN3921_c0_g1_1385_TPlot.pdf
TRINITY_DN3921_c0_g1:1437	si_a633	TRINITY_DN3921_c0_g1	1426	1449	1437	-26.40	-19.10	0.723484848484849	12	1-7,1449-1443;8-20,1439-1427	x-x,1442-1440[BULt];21-21,1426-1426[UP3]	.(((((((((((((...(((((((&)))))))---))))))))))))).	AACUCGAGGAAGUCAGUGGCAUGG&UUAUGUC---GAUUUUUUUGAGUA	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN3921_c0_g1_1437_TPlot.pdf
TRINITY_DN3921_c0_g1:1443	si_a662	TRINITY_DN3921_c0_g1	1431	1451	1443	-33.40	-23.00	0.688622754491018	9	1-2,1451-1450;5-9,1447-1443;11-17,1442-1436;18-21,1434-1431	3-4,1449-1448[SIL];10-10,x-x[BULq];x-x,1435-1435[BULt]	((((.(((((((-(((((..((&))..))))).)))))))-))))	GAGGAAGUCAGU-GGCAUGGCC&GGAAAUGCCUAUUGAUU-CCUU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a662_TRINITY_DN3921_c0_g1_1443_TPlot.pdf
TRINITY_DN39220_c0_g1:224	si_a331	TRINITY_DN39220_c0_g1	213	238	224	-30.60	-22.00	0.718954248366013	15.5	2-8,237-231;9-20,225-214	1-1,238-238[UP5];x-x,230-226[BULt];21-21,213-213[UP3]	.((((((((((((.....(((((((.&.)))))))-----)))))))))))).	AUCGGGAUAGGGACAAAGAUAAGGAG&UUUUUUAU-----UCCUUGUCCCGAA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN39220_c0_g1_224_TPlot.pdf
TRINITY_DN39220_c0_g1:485	si_s72	TRINITY_DN39220_c0_g1	474	494	485	-24.10	-20.00	0.829875518672199	6	1-7,494-488;10-21,485-474	8-9,487-486[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGGAAAGAAAGUUAAUGGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN39220_c0_g1_485_TPlot.pdf
TRINITY_DN39220_c0_g1:487	si_s70	TRINITY_DN39220_c0_g1	476	496	487	-25.80	-18.00	0.697674418604651	9	3-9,494-488;12-21,485-476	1-2,496-495[UP5];10-11,487-486[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	GGAAAGAAAGUUAAUGGAAAU&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999999566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN39220_c0_g1_487_TPlot.pdf
TRINITY_DN39221_c0_g1:2780	si_s199	TRINITY_DN39221_c0_g1	2769	2794	2780	-31.20	-21.40	0.685897435897436	15.5	2-5,2793-2790;7-9,2788-2786;10-21,2780-2769	1-1,2794-2794[UP5];6-6,2789-2789[SIL];x-x,2785-2781[BULt]	((((((((((((.....(((.((((.&.)))).)))-----))))))))))))	ACAGCUGGUGCACAACCUUCGAGAAG&AUUUUGGAA-----UGUACCAGUUGU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN39221_c0_g1_2780_TPlot.pdf
TRINITY_DN39221_c0_g1:2875	si_s380	TRINITY_DN39221_c0_g1	2864	2885	2875	-40.00	-26.60	0.665	8	2-3,2884-2883;4-15,2881-2870;17-18,2868-2867	1-1,2885-2885[UP5];x-x,2882-2882[BULt];16-16,2869-2869[SIL];19-21,2866-2864[UP3]	...((.((((((((((((.((.&.))-)))))))))))).))...	CAAGUCAGGCGGACAUGCUGAA&CUC-GCGUGUCCGCCUUACAUU	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN39221_c0_g1_2875_TPlot.pdf
TRINITY_DN39221_c0_g1:2960	si_a622	TRINITY_DN39221_c0_g1	2941	2970	2960	-35.10	-24.20	0.689458689458689	12.5	1-7,2970-2964;8-13,2962-2957;14-20,2948-2942	x-x,2963-2963[BULt];x-x,2956-2949[BULt];21-21,2941-2941[UP3]	.(((((((........((((((.(((((((&)))))))-))))))--------))))))).	CUCGACGUUGCCGCAAAAUACGCCCUGGUC&GACUAGG-CGUAUU--------AUGUCGAU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN39221_c0_g1_2960_TPlot.pdf
TRINITY_DN39221_c0_g1:2962	si_a620	TRINITY_DN39221_c0_g1	2943	2972	2962	-36.40	-25.50	0.700549450549451	11.5	1-9,2972-2964;10-15,2962-2957;16-21,2948-2943	x-x,2963-2963[BULt];x-x,2956-2949[BULt]	((((((........((((((.(((((((((&)))))))))-))))))--------))))))	CGACGUUGCCGCAAAAUACGCCCUGGUCGA&UCGACUAGG-CGUAUU--------AUGUCG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a620_TRINITY_DN39221_c0_g1_2962_TPlot.pdf
TRINITY_DN39221_c0_g1:2965	si_a618	TRINITY_DN39221_c0_g1	2953	2974	2965	-33.10	-24.20	0.731117824773414	7.5	3-11,2972-2964;12-17,2962-2957;19-21,2955-2953	1-2,2974-2973[UP5];x-x,2963-2963[BULt];18-18,2956-2956[SIL]	(((.((((((.(((((((((..&..)))))))))-)))))).)))	GCAAAAUACGCCCUGGUCGACG&AAUCGACUAGG-CGUAUUAUGU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a618_TRINITY_DN39221_c0_g1_2965_TPlot.pdf
TRINITY_DN39221_c0_g1:3045	si_s370	TRINITY_DN39221_c0_g1	3033	3055	3045	-43.70	-28.60	0.654462242562929	7	3-4,3053-3052;5-14,3050-3041;15-15,3039-3039;17-21,3037-3033	1-2,3055-3054[UP5];x-x,3051-3051[BULt];x-x,3040-3040[BULt];16-16,3038-3038[SIL]	(((((.(.((((((((((.((..&..))-))))))))))-).)))))	GGACAAGUCGAGCGAUCGCGUGG&GAAC-CGAUCGCUCG-CGUGUCC	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s370_TRINITY_DN39221_c0_g1_3045_TPlot.pdf
TRINITY_DN39221_c0_g1:3052	si_s364	TRINITY_DN39221_c0_g1	3039	3062	3052	-38.50	-25.30	0.657142857142857	10	3-7,3060-3056;9-10,3053-3052;11-20,3050-3041;21-21,3039-3039	1-2,3062-3061[UP5];8-8,3055-3054[AILt];x-x,3051-3051[BULt];x-x,3040-3040[BULt]	(.((((((((((.((..(((((..&..)))))-.))-))))))))))-)	GUCGAGCGAUCGCGUGGCAAUCAC&UAGAUUG-AAC-CGAUCGCUCG-C	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s364_TRINITY_DN39221_c0_g1_3052_TPlot.pdf
TRINITY_DN39221_c0_g1:3464	si_s79	TRINITY_DN39221_c0_g1	3453	3473	3464	-26.20	-17.40	0.66412213740458	16	8-20,3466-3454	1-7,3473-3467[UP5];21-21,3453-3453[UP3]	.(((((((((((((.......&.......))))))))))))).	CGGAAGAAGGGAGAUCAUGAU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN39221_c0_g1_3464_TPlot.pdf
TRINITY_DN39221_c0_g1:3465	si_s78	TRINITY_DN39221_c0_g1	3454	3474	3465	-26.20	-17.40	0.66412213740458	17	9-21,3466-3454	1-8,3474-3467[UP5]	(((((((((((((........&........)))))))))))))	GGAAGAAGGGAGAUCAUGAUG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN39221_c0_g1_3465_TPlot.pdf
TRINITY_DN39221_c0_g1:3634	si_a337	TRINITY_DN39221_c0_g1	3622	3643	3634	-30.80	-21.40	0.694805194805195	8	1-12,3643-3632;13-15,3630-3628;18-21,3625-3622	x-x,3631-3631[BULt];16-17,3627-3626[SIL]	((((..(((.((((((((((((&))))))))))))-)))..))))	GAUGCCUUCAGGGGCAGGGAGU&AUUCCUUGUCCC-GAAAAUAUU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN39221_c0_g1_3634_TPlot.pdf
TRINITY_DN39221_c0_g1:3635	si_a336	TRINITY_DN39221_c0_g1	3623	3644	3635	-31.20	-21.40	0.685897435897436	10	2-13,3643-3632;14-16,3630-3628	1-1,3644-3644[UP5];x-x,3631-3631[BULt];17-21,3627-3623[UP3]	.....(((.((((((((((((.&.))))))))))))-))).....	AUGCCUUCAGGGGCAGGGAGUU&UAUUCCUUGUCCC-GAAAAUAU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN39221_c0_g1_3635_TPlot.pdf
TRINITY_DN39221_c0_g1:3636	si_a335	TRINITY_DN39221_c0_g1	3624	3645	3636	-31.10	-21.40	0.688102893890675	11	3-14,3643-3632;15-17,3630-3628	1-2,3645-3644[UP5];x-x,3631-3631[BULt];18-21,3627-3624[UP3]	....(((.((((((((((((..&..))))))))))))-)))....	UGCCUUCAGGGGCAGGGAGUUG&UUAUUCCUUGUCCC-GAAAAUA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN39221_c0_g1_3636_TPlot.pdf
TRINITY_DN39221_c0_g1:3637	si_a334	TRINITY_DN39221_c0_g1	3625	3646	3637	-30.70	-21.40	0.697068403908795	12	4-15,3643-3632;16-18,3630-3628	1-3,3646-3644[UP5];x-x,3631-3631[BULt];19-21,3627-3625[UP3]	...(((.((((((((((((...&...))))))))))))-)))...	GCCUUCAGGGGCAGGGAGUUGG&UUUAUUCCUUGUCCC-GAAAAU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN39221_c0_g1_3637_TPlot.pdf
TRINITY_DN39221_c0_g1:3638	si_a333	TRINITY_DN39221_c0_g1	3626	3647	3638	-30.60	-21.40	0.699346405228758	12.5	5-16,3643-3632;17-19,3630-3628	1-4,3647-3644[UP5];x-x,3631-3631[BULt];20-21,3627-3626[UP3]	..(((.((((((((((((....&....))))))))))))-)))..	CCUUCAGGGGCAGGGAGUUGGC&UUUUAUUCCUUGUCCC-GAAAA	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN39221_c0_g1_3638_TPlot.pdf
TRINITY_DN39221_c0_g1:3639	si_a332	TRINITY_DN39221_c0_g1	3627	3648	3639	-30.60	-21.40	0.699346405228758	13.5	6-17,3643-3632;18-20,3630-3628	1-5,3648-3644[UP5];x-x,3631-3631[BULt];21-21,3627-3627[UP3]	.(((.((((((((((((.....&.....))))))))))))-))).	CUUCAGGGGCAGGGAGUUGGCG&UUUUUAUUCCUUGUCCC-GAAA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN39221_c0_g1_3639_TPlot.pdf
TRINITY_DN39221_c0_g1:3642	si_a329	TRINITY_DN39221_c0_g1	3631	3651	3642	-29.60	-20.40	0.689189189189189	18	9-20,3643-3632	1-8,3651-3644[UP5];21-21,3631-3631[UP3]	.((((((((((((........&........)))))))))))).	AGGGGCAGGGAGUUGGCGGCA&AUUUUUUUAUUCCUUGUCCCG	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN39221_c0_g1_3642_TPlot.pdf
TRINITY_DN39221_c0_g1:3643	si_a328	TRINITY_DN39221_c0_g1	3632	3652	3643	-30.10	-20.00	0.664451827242525	19	10-21,3643-3632	1-9,3652-3644[UP5]	((((((((((((.........&.........))))))))))))	GGGGCAGGGAGUUGGCGGCAC&GAUUUUUUUAUUCCUUGUCCC	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN39221_c0_g1_3643_TPlot.pdf
TRINITY_DN39229_c0_g1:627	si_s68	TRINITY_DN39229_c0_g1	616	637	627	-23.10	-16.40	0.70995670995671	11	1-7,637-631;12-21,625-616	8-11,630-626[AILt]	((((((((((.....(((((((&)))))))-....))))))))))	GAAGAGAAAAUUGAUGAAGUUG&CAACUUC-UAUUUUUUUUCUUU	2	0.999995017964448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN39229_c0_g1_627_TPlot.pdf
TRINITY_DN3922_c0_g1:442	si_s80	TRINITY_DN3922_c0_g1	431	456	442	-28.20	-18.60	0.659574468085106	20	5-9,452-448;10-21,442-431	1-4,456-453[UP5];x-x,447-443[BULt]	((((((((((((.....(((((....&....)))))-----))))))))))))	GAAGAAGGGAGGCGGUCGAGGAUCUA&UUUUUCUUU-----CCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN3922_c0_g1_442_TPlot.pdf
TRINITY_DN39233_c0_g1:1384	si_a32	TRINITY_DN39233_c0_g1	1374	1393	1384	-35.90	-24.20	0.674094707520891	7.5	4-15,1390-1379;17-21,1378-1374	1-3,1393-1391[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	ACCUG-CGGUUUUAGAACGUG&UUAGUUCUAAGACCGGUAGGU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN39233_c0_g1_1384_TPlot.pdf
TRINITY_DN39249_c0_g1:615	si_a491	TRINITY_DN39249_c0_g1	603	624	615	-29.90	-20.60	0.688963210702341	9.5	3-11,622-614;13-14,612-611;16-21,608-603	1-2,624-623[UP5];12-12,613-613[SIL];15-15,610-609[AILt]	((((((..((.(((((((((..&..))))))))).))-.))))))	GACGAGCUAAGGGCAUGUUCAA&UAGAAUAUGUCGUU-UUUCGUC	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN39249_c0_g1_615_TPlot.pdf
TRINITY_DN39249_c0_g1:659	si_s493	TRINITY_DN39249_c0_g1	648	668	659	-19.80	-13.10	0.661616161616162	5	1-5,668-664;7-10,662-659;12-21,657-648	6-6,663-663[SIL];11-11,658-658[SIL]	((((((((((.((((.(((((&))))).)))).))))))))))	UUGUUUUGUUGAUGUAUAAAU&AUUUAAAUAUAAACAAAACAA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN39249_c0_g1_659_TPlot.pdf
TRINITY_DN39249_c0_g1:761	si_a893	TRINITY_DN39249_c0_g1	748	771	761	-21.70	-14.70	0.67741935483871	5.5	1-9,771-763;10-14,761-757;15-21,754-748	x-x,762-762[BULt];x-x,756-755[BULt]	(((((((..(((((.(((((((((&)))))))))-)))))--)))))))	UGUUACUAGUAUUACUUACUGUAU&AUAUAGUAA-UAAUA--AGUAAUA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN39249_c0_g1_761_TPlot.pdf
TRINITY_DN3924_c0_g1:1095	si_s482	TRINITY_DN3924_c0_g1	1082	1104	1095	-21.20	-14.30	0.674528301886792	9	1-13,1104-1092;14-19,1089-1084	x-x,1091-1090[BULt];20-21,1083-1082[UP3]	..((((((..(((((((((((((&)))))))))))))--))))))..	ACAUUUAGUUGUGGGUAUAGGGU&AUCCUAUAUUUAU--UUAAAUAU	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN3924_c0_g1_1095_TPlot.pdf
TRINITY_DN3924_c0_g1:1098	si_s421	TRINITY_DN3924_c0_g1	1086	1107	1098	-23.00	-16.20	0.704347826086956	10.5	1-12,1107-1096;14-18,1093-1089	13-13,1095-1094[AILt];19-21,1088-1086[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	UUAGUUGUGGGUAUAGGGUGUG&CAUAUUCUAUAU-AACAAUAAU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN3924_c0_g1_1098_TPlot.pdf
TRINITY_DN3924_c0_g1:1104	si_s415	TRINITY_DN3924_c0_g1	1093	1113	1104	-26.60	-17.60	0.661654135338346	13.5	5-18,1109-1096	1-4,1113-1110[UP5];19-21,1095-1093[UP3]	...((((((((((((((....&....))))))))))))))...	UGGGUAUAGGGUGUGUCUCGC&AAACGACAUAUUCUAUAUAAC	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN3924_c0_g1_1104_TPlot.pdf
TRINITY_DN3924_c0_g1:1107	si_s412	TRINITY_DN3924_c0_g1	1096	1116	1107	-26.40	-17.20	0.651515151515151	15.5	8-21,1109-1096	1-7,1116-1110[UP5]	((((((((((((((.......&.......))))))))))))))	GUAUAGGGUGUGUCUCGCUGA&GAAAAACGACAUAUUCUAUAU	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s412_TRINITY_DN3924_c0_g1_1107_TPlot.pdf
TRINITY_DN3924_c0_g1:928	si_s484	TRINITY_DN3924_c0_g1	916	937	928	-20.50	-14.30	0.697560975609756	8	1-12,937-926;15-19,922-918	13-14,925-923[AILt];20-21,917-916[UP3]	..(((((...((((((((((((&))))))))))))-..)))))..	AAAUAUUGGUAAUAAGUAUGGG&CCUAUAUUUAUU-UAAAUAUAA	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN3924_c0_g1_928_TPlot.pdf
TRINITY_DN3924_c0_g1:929	si_s483	TRINITY_DN3924_c0_g1	917	938	929	-21.40	-15.90	0.742990654205608	6	1-13,938-926;16-20,922-918	14-15,925-923[AILt];21-21,917-917[UP3]	.(((((...(((((((((((((&)))))))))))))-..))))).	AAUAUUGGUAAUAAGUAUGGGA&UCCUAUAUUUAUU-UAAAUAUA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN3924_c0_g1_929_TPlot.pdf
TRINITY_DN39250_c0_g1:14	si_s70	TRINITY_DN39250_c0_g1	3	28	14	-25.80	-17.18	0.665891472868217	19	1-8,28-21;12-21,12-3	9-11,20-13[AILt]	((((((((((........((((((((&))))))))-----...))))))))))	GGAAAGAAAAUUGGUAUUGUAGGGGU&ACUUCUAU-----UUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN39250_c0_g1_14_TPlot.pdf
TRINITY_DN39257_c0_g1:1038	si_a839	TRINITY_DN39257_c0_g1	1027	1047	1038	-26.50	-18.10	0.683018867924528	11	4-16,1044-1032	1-3,1047-1045[UP5];17-21,1031-1027[UP3]	.....(((((((((((((...&...))))))))))))).....	AGACAAGCAGCUUCUAUUCUG&AAAAAUAGAAGUUGCUAACUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN39257_c0_g1_1038_TPlot.pdf
TRINITY_DN39257_c0_g1:473	si_a75	TRINITY_DN39257_c0_g1	462	482	473	-21.30	-15.10	0.708920187793427	5	2-13,481-470;15-20,468-463	1-1,482-482[UP5];14-14,469-469[SIL];21-21,462-462[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CUGAUGAAGAAAAACAGUUUC&CAAAUUGUUUUUCAUUAUUAA	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN39257_c0_g1_473_TPlot.pdf
TRINITY_DN39257_c0_g1:474	si_a74	TRINITY_DN39257_c0_g1	463	483	474	-22.20	-14.80	0.666666666666667	6	3-14,481-470;16-21,468-463	1-2,483-482[UP5];15-15,469-469[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UGAUGAAGAAAAACAGUUUCU&UCAAAUUGUUUUUCAUUAUUA	2	0.999995259920263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN39257_c0_g1_474_TPlot.pdf
TRINITY_DN3925_c0_g1:1472	si_s803	TRINITY_DN3925_c0_g1	1461	1481	1472	-26.00	-17.60	0.676923076923077	11.5	4-10,1478-1472;12-21,1470-1461	1-3,1481-1479[UP5];11-11,1471-1471[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GAAAGGUAACAGAGGUGGUAA&AUUUUAUCUUCGUUACCUUUU	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3925_c0_g1_1472_TPlot.pdf
TRINITY_DN3925_c0_g1:1473	si_s802	TRINITY_DN3925_c0_g1	1462	1483	1473	-26.40	-17.50	0.662878787878788	8	1-4,1483-1480;5-11,1478-1472;13-21,1470-1462	x-x,1479-1479[BULt];12-12,1471-1471[SIL]	(((((((((.(((((((.((((&))))-))))))).)))))))))	AAAGGUAACAGAGGUGGUAAUA&UAUU-UUAUCUUCGUUACCUUU	4	0.999999999823709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN3925_c0_g1_1473_TPlot.pdf
TRINITY_DN3925_c0_g1:2573	si_s124	TRINITY_DN3925_c0_g1	2562	2582	2573	-27.10	-17.90	0.660516605166052	10	4-18,2579-2565	1-3,2582-2580[UP5];19-21,2564-2562[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAUAUUCAACUUUUCUGUGAU&AAAAUAGAAGAGUUGAAUCAA	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN3925_c0_g1_2573_TPlot.pdf
TRINITY_DN39260_c0_g1:1070	si_a751	TRINITY_DN39260_c0_g1	1059	1077	1070	-37.20	-24.40	0.655913978494624	8	1-4,1077-1074;7-15,1073-1065;17-21,1063-1059	5-6,x-x[BULq];16-16,1064-1064[SIL]	(((((.(((((((((--((((&))))..))))))))).)))))	AGGCUGGAAGGAGGU--GUGG&CCAUGAACCUCCUUUGGGUUU	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN39260_c0_g1_1070_TPlot.pdf
TRINITY_DN39260_c0_g1:1414	si_s66	TRINITY_DN39260_c0_g1	1403	1422	1414	-26.30	-18.10	0.688212927756654	5.5	1-4,1422-1419;6-7,1417-1416;9-21,1415-1403	5-5,1418-1418[SIL];8-8,x-x[BULq]	(((((((((((((-((.((((&)))).)).)))))))))))))	AGGAAAAAAGUAG-AGAUGCU&AGCAACUUCUAUUUUUUUUCU	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN39260_c0_g1_1414_TPlot.pdf
TRINITY_DN39262_c0_g1:153	si_s89	TRINITY_DN39262_c0_g1	144	162	153	-35.30	-23.60	0.668555240793201	5	2-13,161-150;16-20,149-145	1-1,162-162[UP5];14-15,x-x[BULq];21-21,144-144[UP3]	.(((((--((((((((((((.&.))))))))))))..))))).	AGAAGC--AGAAGAAGAGAGA&CCUUUCUUCUUCUUCGCUUCG	2	0.999999989615607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN39262_c0_g1_153_TPlot.pdf
TRINITY_DN39262_c0_g1:154	si_s88	TRINITY_DN39262_c0_g1	145	163	154	-34.80	-23.20	0.666666666666667	6	3-14,161-150;17-21,149-145	1-2,163-162[UP5];15-16,x-x[BULq]	(((((--((((((((((((..&..))))))))))))..)))))	GAAGC--AGAAGAAGAGAGAG&UCCUUUCUUCUUCUUCGCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN39262_c0_g1_154_TPlot.pdf
TRINITY_DN39262_c0_g1:1554	si_a788	TRINITY_DN39262_c0_g1	1543	1563	1554	-24.80	-16.90	0.681451612903226	6	1-12,1563-1552;14-15,1550-1549;17-20,1547-1544	13-13,1551-1551[SIL];16-16,1548-1548[SIL];21-21,1543-1543[UP3]	.((((.((.((((((((((((&)))))))))))).)).)))).	AUGGACAAAGGAGAAAUAGGA&UUCUAUUUUUCUAUUUUCCAA	2	0.999998414669568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN39262_c0_g1_1554_TPlot.pdf
TRINITY_DN39262_c0_g1:1555	si_a787	TRINITY_DN39262_c0_g1	1544	1564	1555	-26.30	-19.60	0.745247148288973	4.5	1-13,1564-1552;15-16,1550-1549;18-21,1547-1544	14-14,1551-1551[SIL];17-17,1548-1548[SIL]	((((.((.(((((((((((((&))))))))))))).)).))))	UGGACAAAGGAGAAAUAGGAG&CUUCUAUUUUUCUAUUUUCCA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN39262_c0_g1_1555_TPlot.pdf
TRINITY_DN39262_c0_g1:1556	si_a786	TRINITY_DN39262_c0_g1	1545	1565	1556	-26.60	-19.60	0.736842105263158	4.5	1-14,1565-1552;16-17,1550-1549;19-21,1547-1545	15-15,1551-1551[SIL];18-18,1548-1548[SIL]	(((.((.((((((((((((((&)))))))))))))).)).)))	GGACAAAGGAGAAAUAGGAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN39262_c0_g1_1556_TPlot.pdf
TRINITY_DN39262_c0_g1:1558	si_a784	TRINITY_DN39262_c0_g1	1547	1567	1558	-24.70	-16.70	0.676113360323887	10	3-16,1565-1552	1-2,1567-1566[UP5];17-21,1551-1547[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACAAAGGAGAAAUAGGAGAUA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999011946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN39262_c0_g1_1558_TPlot.pdf
TRINITY_DN39262_c0_g1:1559	si_a783	TRINITY_DN39262_c0_g1	1548	1568	1559	-24.70	-16.70	0.676113360323887	11	4-17,1565-1552	1-3,1568-1566[UP5];18-21,1551-1548[UP3]	....((((((((((((((...&...))))))))))))))....	CAAAGGAGAAAUAGGAGAUAU&AACUCUUCUAUUUUUCUAUUU	3	0.999999999999857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN39262_c0_g1_1559_TPlot.pdf
TRINITY_DN39262_c0_g1:1561	si_a781	TRINITY_DN39262_c0_g1	1550	1570	1561	-27.40	-18.60	0.678832116788321	8	1-3,1570-1568;6-19,1565-1552	4-5,1567-1566[SIL];20-21,1551-1550[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	AAGGAGAAAUAGGAGAUAUGA&UCAACUCUUCUAUUUUUCUAU	3	0.999859008526984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN39262_c0_g1_1561_TPlot.pdf
TRINITY_DN39262_c0_g1:1562	si_a780	TRINITY_DN39262_c0_g1	1551	1571	1562	-27.30	-19.50	0.714285714285714	7	1-4,1571-1568;7-20,1565-1552	5-6,1567-1566[SIL];21-21,1551-1551[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AGGAGAAAUAGGAGAUAUGAA&UUCAACUCUUCUAUUUUUCUA	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN39262_c0_g1_1562_TPlot.pdf
TRINITY_DN39262_c0_g1:1563	si_a779	TRINITY_DN39262_c0_g1	1552	1572	1563	-27.00	-19.00	0.703703703703704	7	2-5,1571-1568;8-21,1565-1552	1-1,1572-1572[UP5];6-7,1567-1566[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	GGAGAAAUAGGAGAUAUGAAA&AUUCAACUCUUCUAUUUUUCU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN39262_c0_g1_1563_TPlot.pdf
TRINITY_DN39262_c0_g1:160	si_s894	TRINITY_DN39262_c0_g1	149	169	160	-29.10	-19.20	0.65979381443299	14	5-16,165-154	1-4,169-166[UP5];17-21,153-149[UP3]	.....((((((((((((....&....)))))))))))).....	CAGAAGAAGAGAGAGCUGAAA&AAUAGGCUUUCUCUUCAAUUU	3	0.999999994667647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN39262_c0_g1_160_TPlot.pdf
TRINITY_DN39262_c0_g1:161	si_s893	TRINITY_DN39262_c0_g1	150	170	161	-29.10	-19.20	0.65979381443299	15	6-17,165-154	1-5,170-166[UP5];18-21,153-150[UP3]	....((((((((((((.....&.....))))))))))))....	AGAAGAAGAGAGAGCUGAAAU&AAAUAGGCUUUCUCUUCAAUU	3	0.999999981667634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN39262_c0_g1_161_TPlot.pdf
TRINITY_DN39262_c0_g1:162	si_s892	TRINITY_DN39262_c0_g1	151	171	162	-29.50	-19.20	0.650847457627119	16	7-18,165-154	1-6,171-166[UP5];19-21,153-151[UP3]	...((((((((((((......&......))))))))))))...	GAAGAAGAGAGAGCUGAAAUU&UAAAUAGGCUUUCUCUUCAAU	4	0.999999966633967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN39262_c0_g1_162_TPlot.pdf
TRINITY_DN39262_c0_g1:164	si_s890	TRINITY_DN39262_c0_g1	153	173	164	-29.50	-19.20	0.650847457627119	17.5	9-20,165-154	1-8,173-166[UP5];21-21,153-153[UP3]	.((((((((((((........&........)))))))))))).	AGAAGAGAGAGCUGAAAUUGC&AAUAAAUAGGCUUUCUCUUCA	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN39262_c0_g1_164_TPlot.pdf
TRINITY_DN39262_c0_g1:1696	si_s69	TRINITY_DN39262_c0_g1	1684	1705	1696	-23.40	-16.70	0.713675213675214	8	3-14,1703-1692;15-20,1690-1685	1-2,1705-1704[UP5];x-x,1691-1691[BULt];21-21,1684-1684[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	AGAAGAACAGAAGAUAGAGGGA&AACUUCUAUUUUUU-UUCUUUC	3	0.999999999999963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39262_c0_g1_1696_TPlot.pdf
TRINITY_DN39262_c0_g1:1697	si_s68	TRINITY_DN39262_c0_g1	1685	1706	1697	-23.10	-16.50	0.714285714285714	9	4-15,1703-1692;16-21,1690-1685	1-3,1706-1704[UP5];x-x,1691-1691[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAAGAACAGAAGAUAGAGGGAU&CAACUUCUAUUUUUU-UUCUUU	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN39262_c0_g1_1697_TPlot.pdf
TRINITY_DN39262_c0_g1:1702	si_s63	TRINITY_DN39262_c0_g1	1691	1714	1702	-25.80	-17.04	0.66046511627907	11.5	1-7,1714-1708;9-20,1703-1692	8-8,1707-1704[AILt];21-21,1691-1691[UP3]	.((((((((((((....(((((((&)))))))---.)))))))))))).	CAGAAGAUAGAGGGAUGUGCUAAU&GUUAGCA---ACUUCUAUUUUUUU	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN39262_c0_g1_1702_TPlot.pdf
TRINITY_DN39262_c0_g1:1704	si_s61	TRINITY_DN39262_c0_g1	1693	1716	1704	-26.50	-17.44	0.65811320754717	12	2-9,1715-1708;11-21,1703-1693	1-1,1716-1716[UP5];10-10,1707-1704[AILt]	(((((((((((....((((((((.&.))))))))---.)))))))))))	GAAGAUAGAGGGAUGUGCUAAUUA&AAGUUAGCA---ACUUCUAUUUUU	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN39262_c0_g1_1704_TPlot.pdf
TRINITY_DN39262_c0_g1:198	si_a130	TRINITY_DN39262_c0_g1	188	207	198	-26.60	-17.80	0.669172932330827	5.5	1-13,207-195;15-19,194-190	14-14,x-x[BULq];20-21,189-188[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	UUGUUGG-UGCUAUUGCUAUA&UAUAGCAAUAGUAAUUAAUCG	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a130_TRINITY_DN39262_c0_g1_198_TPlot.pdf
TRINITY_DN39262_c0_g1:203	si_a125	TRINITY_DN39262_c0_g1	192	212	203	-25.00	-19.60	0.784	7.5	1-1,212-212;3-18,210-195	2-2,211-211[SIL];19-21,194-192[UP3]	...((((((((((((((((.(&).))))))))))))))))...	UGGUGCUAUUGCUAUAGGAGA&UGUUUUAUAGCAAUAGUAAUU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN39262_c0_g1_203_TPlot.pdf
TRINITY_DN39262_c0_g1:205	si_a123	TRINITY_DN39262_c0_g1	194	214	205	-26.60	-19.80	0.744360902255639	8.5	3-3,212-212;5-20,210-195	1-2,214-213[UP5];4-4,211-211[SIL];21-21,194-194[UP3]	.((((((((((((((((.(..&..).)))))))))))))))).	GUGCUAUUGCUAUAGGAGAUU&CUUGUUUUAUAGCAAUAGUAA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN39262_c0_g1_205_TPlot.pdf
TRINITY_DN39262_c0_g1:206	si_a122	TRINITY_DN39262_c0_g1	195	218	206	-29.00	-19.70	0.679310344827586	12	1-3,218-216;4-4,212-212;6-21,210-195	x-x,215-213[BULt];5-5,211-211[SIL]	((((((((((((((((.(...(((&)))---).))))))))))))))))	UGCUAUUGCUAUAGGAGAUUUGGU&GCU---UGUUUUAUAGCAAUAGUA	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN39262_c0_g1_206_TPlot.pdf
TRINITY_DN39262_c0_g1:207	si_a121	TRINITY_DN39262_c0_g1	196	219	207	-29.30	-19.50	0.665529010238908	12.5	1-4,219-216;5-5,212-212;7-21,210-196	x-x,215-213[BULt];6-6,211-211[SIL]	(((((((((((((((.(...((((&))))---).)))))))))))))))	GCUAUUGCUAUAGGAGAUUUGGUU&AGCU---UGUUUUAUAGCAAUAGU	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN39262_c0_g1_207_TPlot.pdf
TRINITY_DN39262_c0_g1:489	si_a245	TRINITY_DN39262_c0_g1	478	498	489	-37.20	-24.50	0.658602150537634	8	2-4,497-495;6-18,493-481	1-1,498-498[UP5];5-5,494-494[SIL];19-21,480-478[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	ACCAUAAUUGGGGGAUGGAGG&AUUCGAUCCCCCGAUUGUAUC	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a245_TRINITY_DN39262_c0_g1_489_TPlot.pdf
TRINITY_DN39262_c0_g1:492	si_a242	TRINITY_DN39262_c0_g1	481	501	492	-37.30	-24.30	0.651474530831099	11	5-7,497-495;9-21,493-481	1-4,501-498[UP5];8-8,494-494[SIL]	(((((((((((((.(((....&....))).)))))))))))))	AUAAUUGGGGGAUGGAGGAAA&UCAAUUCGAUCCCCCGAUUGU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a242_TRINITY_DN39262_c0_g1_492_TPlot.pdf
TRINITY_DN39262_c0_g1:493	si_a791	TRINITY_DN39262_c0_g1	482	502	493	-26.50	-17.50	0.660377358490566	10	3-19,500-484	1-2,502-501[UP5];20-21,483-482[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAAUUGGGGGAUGGAGGAAAG&UAUUUUUCUAUUUUCCAAUCC	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN39262_c0_g1_493_TPlot.pdf
TRINITY_DN39262_c0_g1:495	si_a789	TRINITY_DN39262_c0_g1	484	509	495	-24.80	-18.60	0.75	15.5	1-5,509-505;6-21,499-484	x-x,504-500[BULt]	((((((((((((((((.....(((((&)))))-----))))))))))))))))	AUUGGGGGAUGGAGGAAAGCAGUAGA&UCUAU-----UUUUCUAUUUUCCAAU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN39262_c0_g1_495_TPlot.pdf
TRINITY_DN39262_c0_g1:496	si_a552	TRINITY_DN39262_c0_g1	485	510	496	-33.10	-21.70	0.655589123867069	16.5	1-6,510-505;7-19,499-487	x-x,504-500[BULt];20-21,486-485[UP3]	..(((((((((((((.....((((((&))))))-----)))))))))))))..	UUGGGGGAUGGAGGAAAGCAGUAGAU&AUCUAU-----UUCUUUAUCUCCCCG	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN39262_c0_g1_496_TPlot.pdf
TRINITY_DN39262_c0_g1:497	si_a551	TRINITY_DN39262_c0_g1	486	511	497	-31.60	-22.00	0.69620253164557	16	2-7,510-505;8-20,499-487	1-1,511-511[UP5];x-x,504-500[BULt];21-21,486-486[UP3]	.(((((((((((((.....((((((.&.))))))-----))))))))))))).	UGGGGGAUGGAGGAAAGCAGUAGAUG&AAUCUAU-----UUCUUUAUCUCCCC	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN39262_c0_g1_497_TPlot.pdf
TRINITY_DN39262_c0_g1:498	si_a550	TRINITY_DN39262_c0_g1	487	512	498	-30.90	-22.00	0.711974110032362	16.5	3-8,510-505;9-21,499-487	1-2,512-511[UP5];x-x,504-500[BULt]	(((((((((((((.....((((((..&..))))))-----)))))))))))))	GGGGGAUGGAGGAAAGCAGUAGAUGC&CAAUCUAU-----UUCUUUAUCUCCC	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN39262_c0_g1_498_TPlot.pdf
TRINITY_DN39262_c0_g1:499	si_s72	TRINITY_DN39262_c0_g1	488	510	499	-24.10	-15.80	0.655601659751037	10.5	2-7,509-504;8-15,501-494;17-21,492-488	1-1,510-510[UP5];x-x,503-502[BULt];16-16,493-493[SIL]	(((((.((((((((..((((((.&.))))))--)))))))).)))))	GGGGAUGGAGGAAAGCAGUAGAU&UUCUAUU--UUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN39262_c0_g1_499_TPlot.pdf
TRINITY_DN39262_c0_g1:87	si_a407	TRINITY_DN39262_c0_g1	75	96	87	-19.80	-13.00	0.656565656565657	7.5	1-12,96-85;15-21,81-75	13-14,84-82[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	AUUUGAAGCUUAAACAGGAUAA&UUGUUUUGUUUA-UAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN39262_c0_g1_87_TPlot.pdf
TRINITY_DN3926_c0_g1:271	si_a501	TRINITY_DN3926_c0_g1	259	281	271	-33.50	-24.00	0.716417910447761	7.5	1-5,281-277;6-15,275-266;16-19,264-261	x-x,276-276[BULt];x-x,265-265[BULt];20-21,260-259[UP3]	..((((.((((((((((.(((((&)))))-))))))))))-))))..	CCCCAAGGGGAGGCGAAGGAACG&CGUUU-UUCGUCUUCC-UUGGAA	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN3926_c0_g1_271_TPlot.pdf
TRINITY_DN3926_c0_g1:273	si_a499	TRINITY_DN3926_c0_g1	261	283	273	-35.20	-23.20	0.659090909090909	8.5	3-7,281-277;8-17,275-266;18-21,264-261	1-2,283-282[UP5];x-x,276-276[BULt];x-x,265-265[BULt]	((((.((((((((((.(((((..&..)))))-))))))))))-))))	CCAAGGGGAGGCGAAGGAACGCC&GUCGUUU-UUCGUCUUCC-UUGG	3	0.999999999993572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3926_c0_g1_273_TPlot.pdf
TRINITY_DN3926_c0_g1:275	si_a497	TRINITY_DN3926_c0_g1	264	285	275	-32.00	-21.00	0.65625	9.5	3-3,283-283;5-9,281-277;10-21,275-264	1-2,285-284[UP5];4-4,282-282[SIL];x-x,276-276[BULt]	((((((((((((.(((((.(..&..).)))))-))))))))))))	AGGGGAGGCGAAGGAACGCCUA&AUGUCGUUU-UUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN3926_c0_g1_275_TPlot.pdf
TRINITY_DN3926_c0_g1:603	si_s159	TRINITY_DN3926_c0_g1	590	614	603	-42.60	-28.20	0.661971830985915	11	1-8,614-607;9-11,604-602;12-15,600-597;16-18,595-593	x-x,606-605[BULt];x-x,601-601[BULt];x-x,596-596[BULt];19-21,592-590[UP3]	...(((.((((.(((..((((((((&))))))))--)))-))))-)))...	AAUCCCGCUGGACCAAUUGAGCCUC&GAGGUUCA--UGG-CCAG-GGGUAA	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN3926_c0_g1_603_TPlot.pdf
TRINITY_DN39279_c0_g1:216	si_a632	TRINITY_DN39279_c0_g1	203	225	216	-26.10	-17.80	0.681992337164751	8	2-10,224-216;11-16,213-208;18-21,206-203	1-1,225-225[UP5];x-x,215-214[BULt];17-17,207-207[SIL]	((((.((((((..(((((((((.&.)))))))))--)))))).))))	GCUCUGAAAAAUCUCGACGUAAA&AUUAUGUCGA--UUUUUUUGAGU	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN39279_c0_g1_216_TPlot.pdf
TRINITY_DN39281_c0_g1:1224	si_a380	TRINITY_DN39281_c0_g1	1213	1233	1224	-24.00	-16.00	0.666666666666667	10.5	5-11,1229-1223;13-20,1221-1214	1-4,1233-1230[UP5];12-12,1222-1222[SIL];21-21,1213-1213[UP3]	.((((((((.(((((((....&....))))))).)))))))).	CUUCUUGAUGCGAAAUCUGAU&AAAUGAUUUCGAAUUAAGAAU	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN39281_c0_g1_1224_TPlot.pdf
TRINITY_DN39281_c0_g1:890	si_a788	TRINITY_DN39281_c0_g1	878	900	890	-24.80	-16.40	0.661290322580645	8.5	1-5,900-896;6-13,894-887;14-21,885-878	x-x,895-895[BULt];x-x,886-886[BULt]	((((((((.((((((((.(((((&)))))-))))))))-))))))))	UUGGAAGGUUGGAGAAGUUAGGG&UUCUA-UUUUUCUA-UUUUCCAA	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN39281_c0_g1_890_TPlot.pdf
TRINITY_DN39284_c0_g1:1034	si_a722	TRINITY_DN39284_c0_g1	1023	1044	1034	-34.70	-22.60	0.651296829971182	8.5	2-6,1043-1039;8-19,1036-1025	1-1,1044-1044[UP5];7-7,1038-1037[AILt];20-21,1024-1023[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	GCAGAUGCUCGAGUCCAUGAUC&AAUCGU-UACUCGGGCAUCUUU	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN39284_c0_g1_1034_TPlot.pdf
TRINITY_DN39284_c0_g1:828	si_a326	TRINITY_DN39284_c0_g1	817	842	828	-26.20	-17.70	0.675572519083969	15.5	1-9,842-834;10-11,828-827;13-21,825-817	x-x,833-829[BULt];12-12,826-826[SIL]	(((((((((.((.....(((((((((&)))))))))-----)).)))))))))	GACAAGGGACGAUACGUGAAGAUCAU&AUGAUUUUU-----UUAUUCCUUGUC	2	0.999968566676748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN39284_c0_g1_828_TPlot.pdf
TRINITY_DN39284_c0_g1:947	si_s41	TRINITY_DN39284_c0_g1	936	956	947	-25.00	-16.50	0.66	8.5	1-6,956-951;9-12,948-945;14-20,943-937	7-8,950-949[SIL];13-13,944-944[SIL];21-21,936-936[UP3]	.(((((((.((((..((((((&))))))..)))).))))))).	GGAGAUCCCAUUAGAGAAGGU&AUCUUUAAUAAUUGGAUUUCA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN39284_c0_g1_947_TPlot.pdf
TRINITY_DN39284_c0_g1:948	si_s40	TRINITY_DN39284_c0_g1	937	957	948	-24.30	-17.00	0.699588477366255	7.5	1-7,957-951;10-13,948-945;15-21,943-937	8-9,950-949[SIL];14-14,944-944[SIL]	(((((((.((((..(((((((&)))))))..)))).)))))))	GAGAUCCCAUUAGAGAAGGUU&AAUCUUUAAUAAUUGGAUUUC	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN39284_c0_g1_948_TPlot.pdf
TRINITY_DN39284_c0_g1:949	si_s39	TRINITY_DN39284_c0_g1	938	958	949	-22.30	-14.70	0.659192825112108	7.5	1-8,958-951;11-14,948-945;16-21,943-938	9-10,950-949[SIL];15-15,944-944[SIL]	((((((.((((..((((((((&))))))))..)))).))))))	AGAUCCCAUUAGAGAAGGUUU&AAAUCUUUAAUAAUUGGAUUU	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN39284_c0_g1_949_TPlot.pdf
TRINITY_DN39285_c0_g1:2670	si_a627	TRINITY_DN39285_c0_g1	2659	2684	2670	-29.50	-19.30	0.654237288135593	12.5	1-7,2684-2678;8-16,2672-2664;18-21,2662-2659	x-x,2677-2673[BULt];17-17,2663-2663[SIL]	((((.(((((((((.....(((((((&)))))))-----))))))))).))))	AAAAUAUUGGCAUAAAGAAAUACGCC&GGCGUAU-----UAUGUCGAUUUUUU	2	0.999930284539678	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN39285_c0_g1_2670_TPlot.pdf
TRINITY_DN39285_c0_g1:604	si_s136	TRINITY_DN39285_c0_g1	592	613	604	-28.90	-18.90	0.653979238754325	8	2-4,612-610;6-12,608-602;13-19,600-594	1-1,613-613[UP5];5-5,609-609[SIL];x-x,601-601[BULt];20-21,593-592[UP3]	..(((((((.(((((((.(((.&.))).)))))))-)))))))..	CAGGGUUUUAUGAUUGGAUCAC&UUGAAUCAAUCA-AAAACCCAA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s136_TRINITY_DN39285_c0_g1_604_TPlot.pdf
TRINITY_DN39292_c0_g1:1054	si_a128	TRINITY_DN39292_c0_g1	1043	1063	1054	-23.20	-15.10	0.650862068965517	6	1-10,1063-1054;12-18,1052-1046	11-11,1053-1053[SIL];19-21,1045-1043[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	UAAAAUUACUUUUGUUAUAAA&UUUAUAGCAAUAGUAAUUAAU	4	0.99994814439953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN39292_c0_g1_1054_TPlot.pdf
TRINITY_DN39293_c0_g1:621	si_a123	TRINITY_DN39293_c0_g1	610	630	621	-26.60	-18.00	0.676691729323308	8	1-13,630-618	14-21,617-610[UP3]	........(((((((((((((&)))))))))))))........	UCGUCACCGCUAUAAAACAAG&CUUGUUUUAUAGCAAUAGUAA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN39293_c0_g1_621_TPlot.pdf
TRINITY_DN39293_c0_g1:629	si_a115	TRINITY_DN39293_c0_g1	618	639	629	-30.40	-19.80	0.651315789473684	11	5-9,635-631;10-21,629-618	1-4,639-636[UP5];x-x,630-630[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	GCUAUAAAACAAGGUUUGGUCA&AAUACGAGC-UUGUUUUAUAGC	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN39293_c0_g1_629_TPlot.pdf
TRINITY_DN39293_c0_g1:781	si_s79	TRINITY_DN39293_c0_g1	770	790	781	-26.20	-17.20	0.656488549618321	11	5-17,786-774;19-19,772-772	1-4,790-787[UP5];18-18,773-773[SIL];20-21,771-770[UP3]	..(.(((((((((((((....&....))))))))))))).)..	GUGUAGAAAGGAAGGAAUUUU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN39293_c0_g1_781_TPlot.pdf
TRINITY_DN39293_c0_g1:784	si_s76	TRINITY_DN39293_c0_g1	773	793	784	-23.60	-17.20	0.728813559322034	15	8-20,786-774	1-7,793-787[UP5];21-21,773-773[UP3]	.(((((((((((((.......&.......))))))))))))).	UAGAAAGGAAGGAAUUUUAUU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN39293_c0_g1_784_TPlot.pdf
TRINITY_DN39293_c0_g1:785	si_s75	TRINITY_DN39293_c0_g1	774	794	785	-24.00	-17.20	0.716666666666667	16	9-21,786-774	1-8,794-787[UP5]	(((((((((((((........&........)))))))))))))	AGAAAGGAAGGAAUUUUAUUG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN39293_c0_g1_785_TPlot.pdf
TRINITY_DN39295_c0_g1:717	si_a71	TRINITY_DN39295_c0_g1	706	724	717	-23.30	-15.58	0.668669527896996	11	1-6,724-719;11-20,716-707	7-10,718-717[AILq];21-21,706-706[UP3]	.((((((((((..--((((((&))))))....)))))))))).	AAGUGAAGAACUG--UGAGAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999999883783	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN39295_c0_g1_717_TPlot.pdf
TRINITY_DN392_c0_g2:4025	si_s84	TRINITY_DN392_c0_g2	4012	4034	4025	-32.30	-22.00	0.681114551083591	6.5	1-10,4034-4025;12-15,4023-4020;16-21,4017-4012	11-11,4024-4024[SIL];x-x,4019-4018[BULt]	((((((..((((.((((((((((&)))))))))).))))--))))))	CGGAGAUGAGAAAAGAGGAAGGA&UCUUUCCUUUCUUCU--UCUUCG	2	0.999999998880991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN392_c0_g2_4025_TPlot.pdf
TRINITY_DN39302_c0_g1:1403	si_a422	TRINITY_DN39302_c0_g1	1393	1412	1403	-27.20	-18.20	0.669117647058823	6.5	1-10,1412-1403;14-21,1400-1393	11-13,1402-1401[AILq]	((((((((..-((((((((((&))))))))))...))))))))	ACGGAUCUCG-AUUUAUUUGA&UUAAAUAAAUAUAGGAUCCGU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN39302_c0_g1_1403_TPlot.pdf
TRINITY_DN39302_c0_g1:1404	si_a421	TRINITY_DN39302_c0_g1	1394	1413	1404	-26.40	-17.80	0.674242424242424	5.5	1-11,1413-1403;15-21,1400-1394	12-14,1402-1401[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	CGGAUCUCG-AUUUAUUUGAA&UUUAAAUAAAUAUAGGAUCCG	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN39302_c0_g1_1404_TPlot.pdf
TRINITY_DN39305_c0_g1:1952	si_s91	TRINITY_DN39305_c0_g1	1939	1961	1952	-34.70	-26.70	0.769452449567723	11.5	2-11,1960-1951;12-20,1948-1940	1-1,1961-1961[UP5];x-x,1950-1949[BULt];21-21,1939-1939[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	GCCGAGGCGAUCGGAGGGAGGGC&UUUCUUCUUCU--UCGCUUCGGA	1	0.0293738497608504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN39305_c0_g1_1952_TPlot.pdf
TRINITY_DN39306_c0_g1:262	si_a708	TRINITY_DN39306_c0_g1	249	271	262	-28.00	-18.30	0.653571428571429	7	1-4,271-268;6-10,266-262;11-18,260-253;19-21,251-249	5-5,267-267[SIL];x-x,261-261[BULt];x-x,252-252[BULt]	(((.((((((((.(((((.((((&)))).)))))-))))))))-)))	GACAGAUUGUUUAUGGAAGGUGC&GUACAUUCCA-AAAUAAUC-GUU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a708_TRINITY_DN39306_c0_g1_262_TPlot.pdf
TRINITY_DN39308_c0_g1:1064	si_s423	TRINITY_DN39308_c0_g1	1053	1073	1064	-21.50	-16.70	0.776744186046512	5	3-15,1071-1059;17-21,1057-1053	1-2,1073-1072[UP5];16-16,1058-1058[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UAAUUUUUGUUAUGUAGAAGA&UAUUCUAUAUAACAAUAAUUA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN39308_c0_g1_1064_TPlot.pdf
TRINITY_DN39308_c0_g1:438	si_s80	TRINITY_DN39308_c0_g1	427	447	438	-28.20	-19.30	0.684397163120567	4.5	1-9,447-439;11-20,437-428	10-10,438-438[SIL];21-21,427-427[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CAAGAAGGAAGAAGAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN39308_c0_g1_438_TPlot.pdf
TRINITY_DN39308_c0_g1:439	si_s79	TRINITY_DN39308_c0_g1	428	448	439	-26.20	-20.20	0.770992366412214	3.5	1-10,448-439;12-21,437-428	11-11,438-438[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AAGAAGGAAGAAGAGAAAAAA&UUUUUUCUUUCCUUUCUUCUU	2	0.999990364208556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN39308_c0_g1_439_TPlot.pdf
TRINITY_DN39308_c0_g1:440	si_s78	TRINITY_DN39308_c0_g1	429	449	440	-26.20	-20.10	0.767175572519084	3.5	1-11,449-439;13-21,437-429	12-12,438-438[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AGAAGGAAGAAGAGAAAAAAA&UUUUUUUCUUUCCUUUCUUCU	2	0.999993529795739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN39308_c0_g1_440_TPlot.pdf
TRINITY_DN39308_c0_g1:441	si_s77	TRINITY_DN39308_c0_g1	430	450	441	-25.50	-19.00	0.745098039215686	3.5	2-12,449-439;14-21,437-430	1-1,450-450[UP5];13-13,438-438[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	GAAGGAAGAAGAGAAAAAAAU&UUUUUUUUCUUUCCUUUCUUC	3	0.999999999999732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN39308_c0_g1_441_TPlot.pdf
TRINITY_DN39308_c0_g1:442	si_s76	TRINITY_DN39308_c0_g1	431	451	442	-23.60	-15.80	0.669491525423729	5.5	3-13,449-439;15-21,437-431	1-2,451-450[UP5];14-14,438-438[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAGGAAGAAGAGAAAAAAAUA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN39308_c0_g1_442_TPlot.pdf
TRINITY_DN39308_c0_g1:564	si_s75	TRINITY_DN39308_c0_g1	553	573	564	-24.00	-16.10	0.670833333333333	18.5	10-21,564-553	1-9,573-565[UP5]	((((((((((((.........&.........))))))))))))	AGAAGGGAAGGACAGUAACAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN39308_c0_g1_564_TPlot.pdf
TRINITY_DN3930_c0_g1:204	si_s76	TRINITY_DN3930_c0_g1	193	213	204	-23.60	-15.40	0.652542372881356	5.5	2-12,212-202;15-21,199-193	1-1,213-213[UP5];13-14,201-200[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AAGAAGGUCAAGAAGAAGAAG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3930_c0_g1_204_TPlot.pdf
TRINITY_DN3930_c0_g1:211	si_s87	TRINITY_DN3930_c0_g1	197	219	211	-32.90	-22.30	0.677811550151976	6	1-6,219-214;8-17,213-204;18-21,200-197	7-7,x-x[BULq];x-x,203-201[BULt]	((((...((((((((((-((((((&)))))).))))))))))---))))	AGGUCAAGAAGAAGAAG-AAGGAA&UUCCUUUCUUCUUCUUC---GCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3930_c0_g1_211_TPlot.pdf
TRINITY_DN3930_c0_g1:212	si_s86	TRINITY_DN3930_c0_g1	201	220	212	-32.90	-22.20	0.674772036474164	6	2-7,219-214;9-18,213-204	1-1,220-220[UP5];8-8,x-x[BULq];19-21,203-201[UP3]	...((((((((((-((((((.&.)))))).))))))))))...	CAAGAAGAAGAAG-AAGGAAG&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3930_c0_g1_212_TPlot.pdf
TRINITY_DN3930_c0_g1:213	si_s85	TRINITY_DN3930_c0_g1	202	224	213	-33.80	-23.40	0.692307692307692	8	1-5,224-220;6-19,217-204	x-x,219-218[BULt];20-21,203-202[UP3]	..((((((((((((((..(((((&)))))--))))))))))))))..	AAGAAGAAGAAGAAGGAAGAAGG&CUUUC--CUUUCUUCUUCUUCGC	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3930_c0_g1_213_TPlot.pdf
TRINITY_DN3930_c0_g1:214	si_s83	TRINITY_DN3930_c0_g1	204	222	214	-30.90	-23.20	0.750809061488673	4	1-5,222-218;7-10,217-214;12-21,213-204	6-6,x-x[BULq];11-11,x-x[BULq]	((((((((((-((((-(((((&))))).)))).))))))))))	GAAGAAGAAG-AAGG-AAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999997865526154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3930_c0_g1_214_TPlot.pdf
TRINITY_DN3930_c0_g1:215	si_s78	TRINITY_DN3930_c0_g1	203	224	215	-26.20	-17.80	0.679389312977099	7	1-12,224-213;14-21,210-203	13-13,212-211[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AGAAGAAGAAGAAGGAAGAAGG&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN3930_c0_g1_215_TPlot.pdf
TRINITY_DN3930_c0_g1:987	si_s90	TRINITY_DN3930_c0_g1	969	996	987	-35.30	-23.20	0.657223796033994	11	1-14,996-983;15-16,975-974;19-21,971-969	x-x,982-976[BULt];17-18,973-972[SIL]	(((..((.......((((((((((((((&))))))))))))))-------))..)))	CCGCUGCAGAAAAAGAAGAAGGAGAAGG&CUUUCUUCUUCUUC-------GCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3930_c0_g1_987_TPlot.pdf
TRINITY_DN3930_c0_g1:990	si_s87	TRINITY_DN3930_c0_g1	979	1000	990	-32.90	-22.10	0.671732522796353	8	1-3,1000-998;4-17,996-983	x-x,997-997[BULt];18-21,982-979[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	AAAAGAAGAAGGAGAAGGCGAA&UUC-CUUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN3930_c0_g1_990_TPlot.pdf
TRINITY_DN3930_c0_g1:991	si_s86	TRINITY_DN3930_c0_g1	980	1001	991	-32.90	-22.50	0.683890577507599	7.5	1-4,1001-998;5-18,996-983	x-x,997-997[BULt];19-21,982-980[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	AAAGAAGAAGGAGAAGGCGAAG&UUUC-CUUUCUUCUUCUUCGCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3930_c0_g1_991_TPlot.pdf
TRINITY_DN3930_c0_g1:993	si_s84	TRINITY_DN3930_c0_g1	982	1003	993	-32.30	-22.60	0.69969040247678	8.5	3-6,1001-998;7-20,996-983	1-2,1003-1002[UP5];x-x,997-997[BULt];21-21,982-982[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AGAAGAAGGAGAAGGCGAAGCA&UCUUUC-CUUUCUUCUUCUUCG	4	0.999999999992029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN3930_c0_g1_993_TPlot.pdf
TRINITY_DN3930_c0_g1:994	si_s83	TRINITY_DN3930_c0_g1	983	1004	994	-30.90	-22.20	0.718446601941748	9.5	4-7,1001-998;8-21,996-983	1-3,1004-1002[UP5];x-x,997-997[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GAAGAAGGAGAAGGCGAAGCAG&UUCUUUC-CUUUCUUCUUCUUC	3	0.999999999976039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3930_c0_g1_994_TPlot.pdf
TRINITY_DN39317_c0_g1:1016	si_a868	TRINITY_DN39317_c0_g1	1003	1025	1016	-24.80	-16.70	0.673387096774194	9	2-14,1024-1012;16-20,1008-1004	1-1,1025-1025[UP5];15-15,1011-1009[AILt];21-21,1003-1003[UP3]	.(((((...(((((((((((((.&.)))))))))))))--.))))).	AGCAGCCAAGAAUCUUUGAUGGC&AUUAUUAAAGAUUU--AGUUGCA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN39317_c0_g1_1016_TPlot.pdf
TRINITY_DN39317_c0_g1:727	si_s72	TRINITY_DN39317_c0_g1	714	736	727	-24.10	-16.30	0.676348547717842	8.5	2-13,735-724;14-19,721-716	1-1,736-736[UP5];x-x,723-722[BULt];20-21,715-714[UP3]	..((((((..((((((((((((.&.))))))))))))--))))))..	ACGGGAAGCAAGGAAAAGUAGAU&UUCUAUUUUUUUU--CUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN39317_c0_g1_727_TPlot.pdf
TRINITY_DN39317_c0_g1:885	si_a721	TRINITY_DN39317_c0_g1	874	894	885	-35.10	-24.70	0.703703703703704	10.5	5-6,890-889;8-21,887-874	1-4,894-891[UP5];7-7,888-888[SIL]	((((((((((((((.((....&....)).))))))))))))))	GGGAUGCUCGAGUAUCGGACG&UAAUCGUUACUCGGGCAUCUU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN39317_c0_g1_885_TPlot.pdf
TRINITY_DN3931_c0_g1:244	si_a314	TRINITY_DN3931_c0_g1	233	254	244	-27.10	-18.80	0.693726937269373	7.5	3-6,252-249;7-16,247-238;18-20,236-234	1-2,254-253[UP5];x-x,248-248[BULt];17-17,237-237[SIL];21-21,233-233[UP3]	.(((.((((((((((.((((..&..))))-)))))))))).))).	CGAAUUCAUGGAUAAUAUCCUA&UUGGAU-UUAUCCAUGAUUUUU	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN3931_c0_g1_244_TPlot.pdf
TRINITY_DN39321_c0_g1:1072	si_a323	TRINITY_DN39321_c0_g1	1057	1081	1072	-26.80	-17.44	0.650746268656716	13.5	1-12,1081-1070;16-20,1062-1058	13-15,1069-1063[AILt];21-21,1057-1057[UP3]	.(((((.......((((((((((((&))))))))))))----...))))).	UAGGAGACACAUUAAGAAUCAUGGA&UCCAUGAUUUUU----UUAUUCCUU	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN39321_c0_g1_1072_TPlot.pdf
TRINITY_DN39321_c0_g1:1125	si_s876	TRINITY_DN39321_c0_g1	1114	1136	1125	-24.20	-17.70	0.731404958677686	8	1-4,1136-1133;5-17,1130-1118	x-x,1132-1131[BULt];18-21,1117-1114[UP3]	....(((((((((((((..((((&))))--)))))))))))))....	AUUAAUUUUUAGUUCUAAUAGAC&GUCU--UAGAACUAAAAAUAAAU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN39321_c0_g1_1125_TPlot.pdf
TRINITY_DN39321_c0_g1:399	si_a468	TRINITY_DN39321_c0_g1	388	408	399	-21.30	-14.00	0.657276995305164	8	3-16,406-393;18-21,391-388	1-2,408-407[UP5];17-17,392-392[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UGACUAUGAUUAUAUGUUGGA&UAUAAUAUGUAAUUAUUGUUA	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN39321_c0_g1_399_TPlot.pdf
TRINITY_DN39324_c0_g1:1022	si_a16	TRINITY_DN39324_c0_g1	1011	1032	1022	-26.30	-17.10	0.650190114068441	9	3-9,1030-1024;11-21,1021-1011	1-2,1032-1031[UP5];10-10,1023-1022[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GCUGAAAAUAAUUUAGGUUUAG&GAAAGCCUA-UUUAUUUUUAGU	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN39324_c0_g1_1022_TPlot.pdf
TRINITY_DN39324_c0_g1:1033	si_a412	TRINITY_DN39324_c0_g1	1022	1042	1033	-18.30	-12.50	0.683060109289617	9.5	2-16,1041-1027	1-1,1042-1042[UP5];17-21,1026-1022[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUAGGUUUAGAUAUAGAUAG&UUGUUUAUAUUUAAAUAAAUA	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN39324_c0_g1_1033_TPlot.pdf
TRINITY_DN39324_c0_g1:1035	si_a410	TRINITY_DN39324_c0_g1	1024	1044	1035	-17.80	-14.20	0.797752808988764	8	2-18,1043-1027	1-1,1044-1044[UP5];19-21,1026-1024[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAGGUUUAGAUAUAGAUAGAU&UUUUGUUUAUAUUUAAAUAAA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN39324_c0_g1_1035_TPlot.pdf
TRINITY_DN39324_c0_g1:1039	si_a406	TRINITY_DN39324_c0_g1	1028	1048	1039	-19.80	-13.80	0.696969696969697	7.5	1-4,1048-1045;6-21,1043-1028	5-5,1044-1044[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	UUUAGAUAUAGAUAGAUUAGU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN39324_c0_g1_1039_TPlot.pdf
TRINITY_DN39324_c0_g1:535	si_a460	TRINITY_DN39324_c0_g1	524	544	535	-21.60	-14.40	0.666666666666667	8.5	2-8,543-537;11-16,534-529;18-21,527-524	1-1,544-544[UP5];9-10,536-535[SIL];17-17,528-528[SIL]	((((.((((((..(((((((.&.)))))))..)))))).))))	AUUAGGUAUUAGUUAUGGCAC&UUGUUAUAUAUAAUAUGUAAU	3	0.999840799792015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN39324_c0_g1_535_TPlot.pdf
TRINITY_DN39335_c0_g1:222	si_a868	TRINITY_DN39335_c0_g1	208	231	222	-24.80	-18.80	0.758064516129032	6.5	3-14,229-218;15-21,214-208	1-2,231-230[UP5];x-x,217-215[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	UGCAGCUUGGAAAUCUUUAAUAUU&AUUAUUAAAGAUUU---AGUUGCA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN39335_c0_g1_222_TPlot.pdf
TRINITY_DN39335_c0_g1:224	si_a866	TRINITY_DN39335_c0_g1	210	232	224	-23.30	-15.30	0.656652360515022	5.5	1-4,232-229;6-16,228-218;17-21,214-210	5-5,x-x[BULq];x-x,217-215[BULt]	(((((...(((((((((((-((((&)))).)))))))))))---)))))	CAGCUUGGAAAUCUUUAAU-AUUG&CAAUUAUUAAAGAUUU---AGUUG	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN39335_c0_g1_224_TPlot.pdf
TRINITY_DN39335_c0_g1:706	si_a477	TRINITY_DN39335_c0_g1	695	715	706	-21.50	-15.90	0.73953488372093	6	1-4,715-712;6-18,710-698	5-5,711-711[SIL];19-21,697-695[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AAAUCUAUAUAACAGUUAUUA&UAAUUAUUGUUAUAUAGAAUA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN39335_c0_g1_706_TPlot.pdf
TRINITY_DN39335_c0_g1:707	si_a476	TRINITY_DN39335_c0_g1	696	716	707	-22.90	-15.90	0.694323144104804	6	2-5,715-712;7-19,710-698	1-1,716-716[UP5];6-6,711-711[SIL];20-21,697-696[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AAUCUAUAUAACAGUUAUUAA&GUAAUUAUUGUUAUAUAGAAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN39335_c0_g1_707_TPlot.pdf
TRINITY_DN39335_c0_g1:708	si_a475	TRINITY_DN39335_c0_g1	697	717	708	-23.50	-15.90	0.676595744680851	7	3-6,715-712;8-20,710-698	1-2,717-716[UP5];7-7,711-711[SIL];21-21,697-697[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AUCUAUAUAACAGUUAUUAAA&UGUAAUUAUUGUUAUAUAGAA	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN39335_c0_g1_708_TPlot.pdf
TRINITY_DN39335_c0_g1:709	si_a474	TRINITY_DN39335_c0_g1	698	718	709	-23.60	-15.70	0.665254237288135	8	4-7,715-712;9-21,710-698	1-3,718-716[UP5];8-8,711-711[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UCUAUAUAACAGUUAUUAAAU&AUGUAAUUAUUGUUAUAUAGA	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN39335_c0_g1_709_TPlot.pdf
TRINITY_DN39338_c0_g1:2536	si_s69	TRINITY_DN39338_c0_g1	2525	2545	2536	-23.40	-16.10	0.688034188034188	8	3-7,2543-2539;9-20,2537-2526	1-2,2545-2544[UP5];8-8,2538-2538[SIL];21-21,2525-2525[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AAAAGAAAAGAGACAGAAGGA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39338_c0_g1_2536_TPlot.pdf
TRINITY_DN39338_c0_g1:3218	si_a142	TRINITY_DN39338_c0_g1	3207	3228	3218	-23.50	-15.40	0.65531914893617	7	2-5,3227-3224;6-8,3222-3220;10-19,3218-3209	1-1,3228-3228[UP5];x-x,3223-3223[BULt];9-9,3219-3219[SIL];20-21,3208-3207[UP3]	..((((((((((.(((.((((.&.))))-))).))))))))))..	GAAAAACAACAAGGAUAUAAUG&AAUUA-AUCGUUGUUGUUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN39338_c0_g1_3218_TPlot.pdf
TRINITY_DN39338_c0_g1:4353	si_s694	TRINITY_DN39338_c0_g1	4342	4363	4353	-23.90	-15.72	0.657740585774059	12	1-6,4363-4358;10-21,4353-4342	7-9,4357-4354[AILt]	((((((((((((....((((((&))))))-...))))))))))))	CUGAUAAGUCGGAGAUGUUGAA&UUUAAU-UAGUCGAUUUAUUAG	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN39338_c0_g1_4353_TPlot.pdf
TRINITY_DN3935_c0_g1:1802	si_a676	TRINITY_DN3935_c0_g1	1790	1811	1802	-34.00	-23.50	0.691176470588235	7.5	2-11,1810-1801;13-14,1799-1798;15-21,1796-1790	1-1,1811-1811[UP5];12-12,1800-1800[SIL];x-x,1797-1797[BULt]	(((((((.((.((((((((((.&.)))))))))).))-)))))))	GAAACUGUCGCGGAUAGGGAGC&AUUCCUUAUUCACG-CGGUUUC	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN3935_c0_g1_1802_TPlot.pdf
TRINITY_DN3935_c0_g1:2178	si_a629	TRINITY_DN3935_c0_g1	2167	2188	2178	-26.30	-18.70	0.711026615969582	7.5	2-6,2187-2183;8-21,2180-2167	1-1,2188-2188[UP5];7-7,2182-2181[AILt]	((((((((((((((..(((((.&.)))))-.))))))))))))))	CGAAAAAAUCGAUAAGAAUGCA&CGUAUU-AUGUCGAUUUUUUUG	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN3935_c0_g1_2178_TPlot.pdf
TRINITY_DN3935_c0_g1:2397	si_a318	TRINITY_DN3935_c0_g1	2386	2408	2397	-22.50	-16.30	0.724444444444444	9.5	2-9,2407-2400;10-19,2397-2388	1-1,2408-2408[UP5];x-x,2399-2398[BULt];20-21,2387-2386[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	CAAGAGAGAUCAAUUGGAUGAAA&AUUUAUCCA--UGAUUUUUUUAU	4	0.999944831616923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN3935_c0_g1_2397_TPlot.pdf
TRINITY_DN3935_c0_g1:2427	si_s92	TRINITY_DN3935_c0_g1	2416	2436	2427	-34.90	-25.20	0.722063037249284	10.5	3-9,2434-2428;12-19,2425-2418	1-2,2436-2435[UP5];10-11,2427-2426[SIL];20-21,2417-2416[UP3]	..((((((((..(((((((..&..)))))))..))))))))..	UACCGAGGCGUUGGAGAAGUG&UUCUUCUUCUUCGCUUCGGAU	4	0.999356558738347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3935_c0_g1_2427_TPlot.pdf
TRINITY_DN3935_c0_g1:3295	si_s82	TRINITY_DN3935_c0_g1	3284	3305	3295	-28.90	-19.30	0.667820069204152	8	2-8,3304-3298;9-18,3296-3287	1-1,3305-3305[UP5];x-x,3297-3297[BULt];19-21,3286-3284[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	UACAAGAAGAAAGAGAAGGAGU&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN3935_c0_g1_3295_TPlot.pdf
TRINITY_DN3935_c0_g1:3874	si_a788	TRINITY_DN3935_c0_g1	3859	3883	3874	-24.80	-18.50	0.745967741935484	9	1-14,3883-3870;15-19,3865-3861	x-x,3869-3866[BULt];20-21,3860-3859[UP3]	..(((((....((((((((((((((&))))))))))))))----)))))..	AAGGAAGUUUGGUGGAAAGAUAGAA&UUCUAUUUUUCUAU----UUUCCAA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN3935_c0_g1_3874_TPlot.pdf
TRINITY_DN3935_c0_g1:3876	si_a786	TRINITY_DN3935_c0_g1	3861	3885	3876	-26.60	-18.20	0.684210526315789	9.5	3-16,3883-3870;17-21,3865-3861	1-2,3885-3884[UP5];x-x,3869-3866[BULt]	(((((....((((((((((((((..&..))))))))))))))----)))))	GGAAGUUUGGUGGAAAGAUAGAAUC&UCUUCUAUUUUUCUAU----UUUCC	3	0.999999999413034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3935_c0_g1_3876_TPlot.pdf
TRINITY_DN39366_c0_g1:1561	si_a399	TRINITY_DN39366_c0_g1	1550	1570	1561	-22.60	-15.70	0.694690265486726	6	2-13,1569-1558;15-20,1556-1551	1-1,1570-1570[UP5];14-14,1557-1557[SIL];21-21,1550-1550[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UUAAACACAACAGUUUUGUAA&AUAUAGAAUUGUUUUGUUUAU	4	0.999966384966176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN39366_c0_g1_1561_TPlot.pdf
TRINITY_DN39372_c0_g1:442	si_s871	TRINITY_DN39372_c0_g1	432	451	442	-31.00	-24.10	0.77741935483871	6	1-10,451-442;12-18,441-435	11-11,x-x[BULq];19-21,434-432[UP3]	...(((((((-((((((((((&)))))))))).)))))))...	CCCUUGGUUC-AAGACCGGUG&UACCGGUCUUAGAACUAAAAA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN39372_c0_g1_442_TPlot.pdf
TRINITY_DN39372_c0_g1:668	si_s612	TRINITY_DN39372_c0_g1	657	677	668	-28.20	-20.30	0.719858156028369	8	1-17,677-661;19-19,659-659	18-18,660-660[SIL];20-21,658-657[UP3]	..(.(((((((((((((((((&))))))))))))))))).)..	CCCACUUGGGUUUGGGAAGGA&UCUUUUUUAAAUCCAAGCGAU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN39372_c0_g1_668_TPlot.pdf
TRINITY_DN39372_c0_g1:669	si_s611	TRINITY_DN39372_c0_g1	658	678	669	-28.20	-21.60	0.765957446808511	6.5	1-18,678-661;20-20,659-659	19-19,660-660[SIL];21-21,658-658[UP3]	.(.((((((((((((((((((&)))))))))))))))))).).	CCACUUGGGUUUGGGAAGGAU&AUCUUUUUUAAAUCCAAGCGA	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN39372_c0_g1_669_TPlot.pdf
TRINITY_DN39372_c0_g1:671	si_s609	TRINITY_DN39372_c0_g1	660	680	671	-27.70	-21.10	0.76173285198556	8.5	3-20,678-661	1-2,680-679[UP5];21-21,660-660[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	ACUUGGGUUUGGGAAGGAUGA&GAAUCUUUUUUAAAUCCAAGC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN39372_c0_g1_671_TPlot.pdf
TRINITY_DN39372_c0_g1:672	si_s608	TRINITY_DN39372_c0_g1	661	681	672	-26.70	-21.60	0.808988764044944	8.5	1-1,681-681;4-21,678-661	2-3,680-679[SIL]	((((((((((((((((((..(&)..))))))))))))))))))	CUUGGGUUUGGGAAGGAUGAG&CGAAUCUUUUUUAAAUCCAAG	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN39372_c0_g1_672_TPlot.pdf
TRINITY_DN39372_c0_g1:718	si_s69	TRINITY_DN39372_c0_g1	707	727	718	-23.40	-16.50	0.705128205128205	9	3-13,725-715;16-20,712-708	1-2,727-726[UP5];14-15,714-713[SIL];21-21,707-707[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	AGGAGAUUAAGAAUGGAAGGU&AACUUCUAUUUUUUUUCUUUC	2	0.999999999877907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39372_c0_g1_718_TPlot.pdf
TRINITY_DN39372_c0_g1:722	si_s65	TRINITY_DN39372_c0_g1	711	733	722	-26.00	-17.18	0.660769230769231	11.5	1-4,733-730;7-17,725-715;20-21,712-711	5-6,729-726[AILt];18-19,714-713[SIL]	((..(((((((((((....((((&))))--..)))))))))))..))	GAUUAAGAAUGGAAGGUUGGCUA&UAGC--AACUUCUAUUUUUUUUC	2	0.999960180951311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN39372_c0_g1_722_TPlot.pdf
TRINITY_DN39372_c0_g1:944	si_a824	TRINITY_DN39372_c0_g1	933	953	944	-23.60	-15.50	0.656779661016949	8	1-11,953-943;13-15,941-939	12-12,942-942[SIL];16-21,938-933[UP3]	......(((.(((((((((((&))))))))))).)))......	UGGGGAUUUGUUUCCUUUCUU&AAGAAAGGAAAGAAAAAAAAU	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN39372_c0_g1_944_TPlot.pdf
TRINITY_DN39372_c0_g1:947	si_a821	TRINITY_DN39372_c0_g1	936	956	947	-26.20	-18.90	0.721374045801527	7	3-14,954-943;16-18,941-939	1-2,956-955[UP5];15-15,942-942[SIL];19-21,938-936[UP3]	...(((.((((((((((((..&..)))))))))))).)))...	GGAUUUGUUUCCUUUCUUCCU&AAGAAGAAAGGAAAGAAAAAA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN39372_c0_g1_947_TPlot.pdf
TRINITY_DN39372_c0_g1:948	si_a820	TRINITY_DN39372_c0_g1	937	957	948	-28.20	-20.10	0.712765957446809	5	1-2,957-956;4-15,954-943;17-19,941-939	3-3,955-955[SIL];16-16,942-942[SIL];20-21,938-937[UP3]	..(((.((((((((((((.((&)).)))))))))))).)))..	GAUUUGUUUCCUUUCUUCCUC&GAAGAAGAAAGGAAAGAAAAA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN39372_c0_g1_948_TPlot.pdf
TRINITY_DN39373_c0_g1:1173	si_s78	TRINITY_DN39373_c0_g1	1161	1182	1173	-26.20	-21.00	0.801526717557252	6.5	2-14,1181-1169;16-21,1166-1161	1-1,1182-1182[UP5];15-15,1168-1167[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	GGAAGAUCAGGAAAGAGGGAAC&UUUUUUUCUUUCCU-UUCUUCU	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN39373_c0_g1_1173_TPlot.pdf
TRINITY_DN39373_c0_g1:1174	si_s77	TRINITY_DN39373_c0_g1	1162	1183	1174	-25.50	-19.80	0.776470588235294	8	3-15,1181-1169;17-21,1166-1162	1-2,1183-1182[UP5];16-16,1168-1167[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	GAAGAUCAGGAAAGAGGGAACG&UUUUUUUUCUUUCCU-UUCUUC	4	0.999999963006205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN39373_c0_g1_1174_TPlot.pdf
TRINITY_DN39378_c0_g1:120	si_s700	TRINITY_DN39378_c0_g1	109	130	120	-29.20	-19.30	0.660958904109589	10	2-9,129-122;11-14,119-116;16-20,114-110	1-1,130-130[UP5];10-10,121-120[AILt];15-15,115-115[SIL];21-21,109-109[UP3]	.(((((.((((..((((((((.&.))))))))-.)))).))))).	GGUUCAGUAGUUUGGUCGACUC&UAGUCGAUU-UAUUAGUGAACA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN39378_c0_g1_120_TPlot.pdf
TRINITY_DN39378_c0_g1:122	si_s699	TRINITY_DN39378_c0_g1	110	131	122	-28.60	-18.90	0.660839160839161	10.5	3-10,129-122;12-15,119-116;17-21,114-110	1-2,131-130[UP5];11-11,121-120[AILt];16-16,115-115[SIL]	(((((.((((..((((((((..&..))))))))-.)))).)))))	GUUCAGUAGUUUGGUCGACUCC&UUAGUCGAUU-UAUUAGUGAAC	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN39378_c0_g1_122_TPlot.pdf
TRINITY_DN39378_c0_g1:475	si_s3	TRINITY_DN39378_c0_g1	464	484	475	-21.20	-15.90	0.75	8	1-12,484-473;14-20,471-465	13-13,472-472[SIL];21-21,464-464[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CGUAAUGGGAGGUGGUGUAGA&UUUAUAUUACUUAUUAUUACU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN39378_c0_g1_475_TPlot.pdf
TRINITY_DN3937_c1_g1:1716	si_s801	TRINITY_DN3937_c1_g1	1705	1726	1716	-28.20	-18.42	0.653191489361702	13	1-5,1726-1722;9-13,1717-1713;15-19,1711-1707	6-8,1721-1718[AILt];14-14,1712-1712[SIL];20-21,1706-1705[UP3]	..(((((.(((((....(((((&)))))-...))))).)))))..	AUGGUAAGGAAGAGAAUGAUGC&GUAUU-UUAUCUUCGUUACCUU	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN3937_c1_g1_1716_TPlot.pdf
TRINITY_DN39386_c0_g1:159	si_s481	TRINITY_DN39386_c0_g1	148	168	159	-23.00	-15.40	0.669565217391304	8	3-16,166-153	1-2,168-167[UP5];17-21,152-148[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAAAGAAAUAAAUAUAGGAGC&GAUCCUAUAUUUAUUUAAAUA	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN39386_c0_g1_159_TPlot.pdf
TRINITY_DN39386_c0_g1:161	si_s479	TRINITY_DN39386_c0_g1	150	170	161	-26.40	-18.50	0.700757575757576	6	1-3,170-168;5-18,166-153	4-4,167-167[SIL];19-21,152-150[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AAGAAAUAAAUAUAGGAGCUG&CGGAUCCUAUAUUUAUUUAAA	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN39386_c0_g1_161_TPlot.pdf
TRINITY_DN39386_c0_g1:162	si_s478	TRINITY_DN39386_c0_g1	151	171	162	-27.20	-18.50	0.680147058823529	6	2-4,170-168;6-19,166-153	1-1,171-171[UP5];5-5,167-167[SIL];20-21,152-151[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AGAAAUAAAUAUAGGAGCUGA&ACGGAUCCUAUAUUUAUUUAA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN39386_c0_g1_162_TPlot.pdf
TRINITY_DN39386_c0_g1:163	si_s477	TRINITY_DN39386_c0_g1	152	172	163	-27.10	-18.50	0.682656826568266	7	3-5,170-168;7-20,166-153	1-2,172-171[UP5];6-6,167-167[SIL];21-21,152-152[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	GAAAUAAAUAUAGGAGCUGAU&AACGGAUCCUAUAUUUAUUUA	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN39386_c0_g1_163_TPlot.pdf
TRINITY_DN3938_c0_g1:14036	si_s72	TRINITY_DN3938_c0_g1	14025	14046	14036	-24.10	-15.80	0.655601659751037	11.5	3-9,14044-14038;12-21,14034-14025	1-2,14046-14045[UP5];10-11,14037-14035[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	AAGGAGAGAACAUAAGAUGGCC&UUCUAUUUU-UUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3938_c0_g1_14036_TPlot.pdf
TRINITY_DN3938_c0_g1:14933	si_a667	TRINITY_DN3938_c0_g1	14918	14941	14933	-32.10	-22.00	0.685358255451713	12.5	1-7,14941-14935;9-10,14934-14933;11-20,14928-14919	8-8,x-x[BULq];x-x,14932-14929[BULt];21-21,14918-14918[UP3]	.((((((((((....((-(((((((&))))))).))----)))))))))).	AGAAUGAGGGAAGGCUC-AUAGGCA&UGCCUAUUGA----UUCCUUAUUCA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN3938_c0_g1_14933_TPlot.pdf
TRINITY_DN3938_c0_g1:15058	si_a792	TRINITY_DN3938_c0_g1	15046	15067	15058	-27.60	-18.20	0.659420289855072	11.5	4-15,15064-15053;18-18,15050-15050;19-21,15048-15046	1-3,15067-15065[UP5];16-17,15052-15051[SIL];x-x,15049-15049[BULt]	(((.(..((((((((((((...&...))))))))))))..)-)))	CGGCAGGGGGAAGUGGAGAUGA&AUUUUUCUAUUUUCCAAU-CCG	4	0.999999198518655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3938_c0_g1_15058_TPlot.pdf
TRINITY_DN3938_c0_g1:15935	si_a799	TRINITY_DN3938_c0_g1	15924	15944	15935	-32.50	-21.20	0.652307692307692	13	5-14,15940-15931;17-19,15928-15926	1-4,15944-15941[UP5];15-16,15930-15929[SIL];20-21,15925-15924[UP3]	..(((..((((((((((....&....))))))))))..)))..	GGCGCGGCGGAUUGGGGCGCU&UAUUUUCCAAUCCGAAGCGAA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN3938_c0_g1_15935_TPlot.pdf
TRINITY_DN3938_c0_g1:16527	si_a24	TRINITY_DN3938_c0_g1	16515	16536	16527	-24.20	-16.20	0.669421487603306	9.5	3-15,16534-16522;18-21,16518-16515	1-2,16536-16535[UP5];16-17,16521-16519[AILt]	((((...(((((((((((((..&..)))))))))))))-..))))	GUCUCGCGAGCUGGAGAUAAGA&AUUUAUUUUUAGUUC-UAAGAC	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN3938_c0_g1_16527_TPlot.pdf
TRINITY_DN3938_c0_g1:16690	si_s797	TRINITY_DN3938_c0_g1	16680	16699	16690	-30.00	-21.60	0.72	5.5	1-10,16699-16690;12-16,16688-16684;18-21,16683-16680	11-11,16689-16689[SIL];17-17,x-x[BULq]	((((-(((((.((((((((((&)))))))))).))))).))))	UGAC-AAGAUCAAGUGCGAGC&GCUCGUAUUUUAUCUUCGUUA	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN3938_c0_g1_16690_TPlot.pdf
TRINITY_DN3938_c0_g1:16792	si_s889	TRINITY_DN3938_c0_g1	16780	16801	16792	-28.80	-18.90	0.65625	16.5	8-10,16794-16792;11-21,16790-16780	1-7,16801-16795[UP5];x-x,16791-16791[BULt]	(((((((((((.(((.......&.......)))-)))))))))))	GAAGAGAAGGCUCUGCUGGUGC&AAAUAAAUAG-GCUUUCUCUUC	4	0.99999174108694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3938_c0_g1_16792_TPlot.pdf
TRINITY_DN3938_c0_g1:19155	si_a499	TRINITY_DN3938_c0_g1	19144	19163	19155	-35.20	-24.40	0.693181818181818	8.5	1-8,19163-19156;11-20,19154-19145	9-10,19155-19155[AILq];21-21,19144-19144[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	AUAAGGAAGACU-GGAGCGAC&GUCGUUUUUCGUCUUCCUUGG	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN3938_c0_g1_19155_TPlot.pdf
TRINITY_DN3938_c0_g1:2493	si_a771	TRINITY_DN3938_c0_g1	2482	2502	2493	-29.40	-19.90	0.67687074829932	9.5	2-7,2501-2496;10-20,2493-2483	1-1,2502-2502[UP5];8-9,2495-2494[SIL];21-21,2482-2482[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	CGAGGAGUUGAAGAAGUUAGU&UUUGAUUGAUUCAACUCUUCU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN3938_c0_g1_2493_TPlot.pdf
TRINITY_DN3938_c0_g1:36	si_a326	TRINITY_DN3938_c0_g1	25	44	36	-26.20	-18.10	0.690839694656489	7	2-3,43-42;5-10,41-36;12-21,34-25	1-1,44-44[UP5];4-4,x-x[BULq];11-11,35-35[SIL]	((((((((((.((((((-((.&.)).)))))).))))))))))	GACAAGGAAUCGAAAAG-CAA&AUGAUUUUUUUAUUCCUUGUC	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN3938_c0_g1_36_TPlot.pdf
TRINITY_DN3938_c0_g1:601	si_a435	TRINITY_DN3938_c0_g1	590	610	601	-36.10	-24.20	0.670360110803324	7	1-2,610-609;4-19,607-592	3-3,608-608[SIL];20-21,591-590[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	GCUUUCAUAUCCGAUGGAACU&GGAUCCGUUGGAUAUGAGAUA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a435_TRINITY_DN3938_c0_g1_601_TPlot.pdf
TRINITY_DN3938_c0_g1:602	si_a434	TRINITY_DN3938_c0_g1	591	611	602	-36.40	-24.40	0.67032967032967	7.5	2-3,610-609;5-20,607-592	1-1,611-611[UP5];4-4,608-608[SIL];21-21,591-591[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	CUUUCAUAUCCGAUGGAACUA&AGGAUCCGUUGGAUAUGAGAU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN3938_c0_g1_602_TPlot.pdf
TRINITY_DN3938_c0_g1:6860	si_a784	TRINITY_DN3938_c0_g1	6849	6869	6860	-24.70	-16.90	0.684210526315789	11.5	4-19,6866-6851	1-3,6869-6867[UP5];20-21,6850-6849[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCAGUGGAGAGGUAGGAGUUA&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999998704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3938_c0_g1_6860_TPlot.pdf
TRINITY_DN39392_c0_g1:54	si_a403	TRINITY_DN39392_c0_g1	43	67	54	-22.00	-14.70	0.668181818181818	13	1-9,67-59;10-18,54-46	x-x,58-55[BULt];19-21,45-43[UP3]	...(((((((((....(((((((((&)))))))))----)))))))))...	UACUAUGAGCGAAUCAAACAAUUCU&AGAAUUGUU----UUGUUUAUAUUU	4	0.999999999999617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN39392_c0_g1_54_TPlot.pdf
TRINITY_DN393_c0_g1:1315	si_a407	TRINITY_DN393_c0_g1	1304	1324	1315	-19.80	-13.20	0.666666666666667	8.5	1-17,1324-1308	18-21,1307-1304[UP3]	....(((((((((((((((((&)))))))))))))))))....	GAAGGAAUAUAGAUGAAAUAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN393_c0_g1_1315_TPlot.pdf
TRINITY_DN393_c0_g1:1316	si_a406	TRINITY_DN393_c0_g1	1305	1325	1316	-19.80	-13.20	0.666666666666667	8.5	2-18,1324-1308	1-1,1325-1325[UP5];19-21,1307-1305[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAGGAAUAUAGAUGAAAUAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN393_c0_g1_1316_TPlot.pdf
TRINITY_DN393_c0_g1:2474	si_a406	TRINITY_DN393_c0_g1	2463	2483	2474	-19.80	-14.10	0.712121212121212	9.5	2-17,2482-2467	1-1,2483-2483[UP5];18-21,2466-2463[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUUGAUAUGAAUAGAACAGC&AUUGUUUUGUUUAUAUUUAAA	2	0.999995814641056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN393_c0_g1_2474_TPlot.pdf
TRINITY_DN393_c0_g1:2820	si_a784	TRINITY_DN393_c0_g1	2808	2832	2820	-24.70	-16.60	0.672064777327935	9.5	2-5,2831-2828;6-14,2824-2816;15-21,2814-2808	1-1,2832-2832[UP5];x-x,2827-2825[BULt];x-x,2815-2815[BULt]	(((((((.(((((((((...((((.&.))))---)))))))))-)))))))	AGAAUAGAAAAGAUAGAGAAAGAGG&ACUCU---UCUAUUUUU-CUAUUUU	2	0.999999999757907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN393_c0_g1_2820_TPlot.pdf
TRINITY_DN393_c0_g1:2995	si_s893	TRINITY_DN393_c0_g1	2984	3005	2995	-29.10	-19.30	0.663230240549828	10	4-9,3002-2997;10-19,2995-2986	1-3,3005-3003[UP5];x-x,2996-2996[BULt];20-21,2985-2984[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	CCUUGAAGAGAAUAGCUUAGAA&AAAUAGGCU-UUCUCUUCAAUU	2	0.999960180951311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN393_c0_g1_2995_TPlot.pdf
TRINITY_DN393_c0_g1:3016	si_a633	TRINITY_DN393_c0_g1	2997	3025	3016	-26.40	-17.70	0.670454545454545	20.5	1-12,3025-3014;13-20,3005-2998	x-x,3013-3006[BULt];21-21,2997-2997[UP3]	.((((((((........((((((((((((&))))))))))))--------)))))))).	AGCUUAGAAGAAGGUGGGAAUCGACGUAA&UUAUGUCGAUUU--------UUUUGAGUA	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN393_c0_g1_3016_TPlot.pdf
TRINITY_DN393_c0_g1:3045	si_s811	TRINITY_DN393_c0_g1	3034	3062	3045	-26.40	-18.40	0.696969696969697	21	1-9,3062-3054;10-20,3045-3035	x-x,3053-3046[BULt];21-21,3034-3034[UP3]	.(((((((((((........(((((((((&)))))))))--------))))))))))).	GUAUUAAGAGAGUACGGAGCGGUAGCGGA&UUCGUUACC--------UUUUCUUAAUAA	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN393_c0_g1_3045_TPlot.pdf
TRINITY_DN393_c0_g1:384	si_a457	TRINITY_DN393_c0_g1	373	393	384	-23.50	-15.70	0.668085106382979	6.5	1-2,393-392;4-12,390-382;14-21,380-373	3-3,391-391[SIL];13-13,381-381[SIL]	((((((((.(((((((((.((&)).))))))))).))))))))	GCAUAUUACGUGUAAUAAGAA&UUGUUGUUAUAUAUAAUAUGU	2	0.97754125916965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN393_c0_g1_384_TPlot.pdf
TRINITY_DN393_c0_g1:653	si_s894	TRINITY_DN393_c0_g1	642	663	653	-29.10	-19.70	0.676975945017182	12	5-6,659-658;7-18,656-645	1-4,663-660[UP5];x-x,657-657[BULt];19-21,644-642[UP3]	...((((((((((((.((....&....))-))))))))))))...	AUCUUGAAGAGAAAGACCGGUA&AAUAGG-CUUUCUCUUCAAUUU	4	0.99999750563007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN393_c0_g1_653_TPlot.pdf
TRINITY_DN393_c0_g1:830	si_a636	TRINITY_DN393_c0_g1	819	839	830	-26.30	-17.30	0.657794676806084	8	1-4,839-836;6-10,834-830;13-21,827-819	5-5,835-835[SIL];11-12,829-828[SIL]	(((((((((..(((((.((((&)))).)))))..)))))))))	UAUUGCUUACCGAAAUGGACA&UGUCGAUUUUUUUGAGUAAUA	3	0.999999999600452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN393_c0_g1_830_TPlot.pdf
TRINITY_DN393_c0_g2:2281	si_s809	TRINITY_DN393_c0_g2	2269	2290	2281	-28.50	-19.10	0.670175438596491	11	1-11,2290-2280;13-16,2277-2274	12-12,2279-2278[AILt];17-21,2273-2269[UP3]	.....((((..(((((((((((&)))))))))))-.)))).....	UGUAUGAAACUGGUGGCGAAGA&UCUUCGUUACC-UUUUCUUAAU	4	0.999999987090159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN393_c0_g2_2281_TPlot.pdf
TRINITY_DN393_c0_g2:2283	si_s807	TRINITY_DN393_c0_g2	2271	2292	2283	-28.90	-19.10	0.660899653979239	10	3-13,2290-2280;15-18,2277-2274	1-2,2292-2291[UP5];14-14,2279-2278[AILt];19-21,2273-2271[UP3]	...((((..(((((((((((..&..)))))))))))-.))))...	UAUGAAACUGGUGGCGAAGAAG&UAUCUUCGUUACC-UUUUCUUA	3	0.999999999974538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN393_c0_g2_2283_TPlot.pdf
TRINITY_DN393_c0_g2:2284	si_s806	TRINITY_DN393_c0_g2	2272	2293	2284	-28.60	-19.10	0.667832167832168	11	4-14,2290-2280;16-19,2277-2274	1-3,2293-2291[UP5];15-15,2279-2278[AILt];20-21,2273-2272[UP3]	..((((..(((((((((((...&...)))))))))))-.))))..	AUGAAACUGGUGGCGAAGAAGC&UUAUCUUCGUUACC-UUUUCUU	2	0.999999669590304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN393_c0_g2_2284_TPlot.pdf
TRINITY_DN393_c0_g2:2286	si_s804	TRINITY_DN393_c0_g2	2274	2295	2286	-27.90	-18.70	0.670250896057348	12.5	6-16,2290-2280;18-21,2277-2274	1-5,2295-2291[UP5];17-17,2279-2278[AILt]	((((..(((((((((((.....&.....)))))))))))-.))))	GAAACUGGUGGCGAAGAAGCAU&UUUUAUCUUCGUUACC-UUUUC	3	0.999999999006427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN393_c0_g2_2286_TPlot.pdf
TRINITY_DN393_c0_g2:2349	si_s899	TRINITY_DN393_c0_g2	2336	2359	2349	-28.30	-19.26	0.680565371024735	10.5	1-9,2359-2351;10-12,2349-2347;16-21,2341-2336	x-x,2350-2350[BULt];13-15,2346-2342[AILt]	((((((.....(((.(((((((((&)))))))))-)))--...))))))	AGUUGAUCCAGUGAUAGAGAAGGC&GCUUUCUCU-UCA--AUUUCAAUU	2	0.999739210418293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN393_c0_g2_2349_TPlot.pdf
TRINITY_DN393_c0_g2:2455	si_a775	TRINITY_DN393_c0_g2	2444	2464	2455	-27.20	-18.30	0.672794117647059	9	1-7,2464-2458;10-18,2455-2447	8-9,2457-2456[SIL];19-21,2446-2444[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	ACCUGGAGGAGUGAGAUCAAU&AUUGAUUCAACUCUUCUAUUU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN393_c0_g2_2455_TPlot.pdf
TRINITY_DN393_c0_g2:4303	si_a480	TRINITY_DN393_c0_g2	4292	4311	4303	-23.70	-15.80	0.666666666666667	5	1-6,4311-4306;9-21,4304-4292	7-8,4305-4305[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GCAUAUUUUAUAUU-CAAUAA&UUAUUGUUAUAUAGAAUAUGU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN393_c0_g2_4303_TPlot.pdf
TRINITY_DN393_c0_g2:549	si_a759	TRINITY_DN393_c0_g2	537	558	549	-32.60	-22.80	0.699386503067485	5.5	1-14,558-545;15-15,543-543;18-20,540-538	x-x,544-544[BULt];16-17,542-541[SIL];21-21,537-537[UP3]	.(((..(.((((((((((((((&))))))))))))))-)..))).	ACAAGAGUAAAACCCAAGGGAG&CUCCUUUGGGUUUU-UGAUUGA	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN393_c0_g2_549_TPlot.pdf
TRINITY_DN393_c0_g2:552	si_a756	TRINITY_DN393_c0_g2	541	561	552	-33.10	-21.60	0.652567975830816	10	4-17,558-545	1-3,561-559[UP5];18-21,544-541[UP3]	....((((((((((((((...&...))))))))))))))....	GAGUAAAACCCAAGGGAGCUG&AACCUCCUUUGGGUUUUUGAU	4	0.999999999970739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN393_c0_g2_552_TPlot.pdf
TRINITY_DN393_c0_g2:559	si_a501	TRINITY_DN393_c0_g2	548	568	559	-33.50	-22.10	0.659701492537313	10.5	1-1,568-568;3-9,566-560;11-19,558-550	2-2,567-567[SIL];10-10,559-559[SIL];20-21,549-548[UP3]	..(((((((((.(((((((.(&).))))))).)))))))))..	ACCCAAGGGAGCUGAGAGGGG&CGUUUUUCGUCUUCCUUGGAA	3	0.99999999999303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN393_c0_g2_559_TPlot.pdf
TRINITY_DN393_c0_g2:560	si_a500	TRINITY_DN393_c0_g2	549	569	560	-34.40	-23.50	0.683139534883721	9.5	1-2,569-568;4-10,566-560;12-20,558-550	3-3,567-567[SIL];11-11,559-559[SIL];21-21,549-549[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	CCCAAGGGAGCUGAGAGGGGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999993631342644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN393_c0_g2_560_TPlot.pdf
TRINITY_DN393_c0_g2:561	si_a499	TRINITY_DN393_c0_g2	550	570	561	-35.20	-24.30	0.690340909090909	9	1-3,570-568;5-11,566-560;13-21,558-550	4-4,567-567[SIL];12-12,559-559[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	CCAAGGGAGCUGAGAGGGGAU&GUCGUUUUUCGUCUUCCUUGG	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN393_c0_g2_561_TPlot.pdf
TRINITY_DN393_c0_g2:562	si_a498	TRINITY_DN393_c0_g2	551	571	562	-33.50	-21.80	0.650746268656716	8.5	1-4,571-568;6-12,566-560;14-21,558-551	5-5,567-567[SIL];13-13,559-559[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	CAAGGGAGCUGAGAGGGGAUA&UGUCGUUUUUCGUCUUCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN393_c0_g2_562_TPlot.pdf
TRINITY_DN393_c0_g2:5687	si_a836	TRINITY_DN393_c0_g2	5676	5696	5687	-24.10	-16.80	0.697095435684647	5.5	3-16,5694-5681;18-20,5679-5677	1-2,5696-5695[UP5];17-17,5680-5680[SIL];21-21,5676-5676[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	AUAGGAAUUUCUAUUUUUUGA&AAAAAAAAUAGAAGUUGCUAA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN393_c0_g2_5687_TPlot.pdf
TRINITY_DN393_c0_g2:576	si_a323	TRINITY_DN393_c0_g2	564	587	576	-26.80	-17.80	0.664179104477612	9	1-5,587-583;6-13,580-573;14-21,571-564	x-x,582-581[BULt];x-x,572-572[BULt]	((((((((.((((((((..(((((&)))))--))))))))-))))))))	AGGGGAUAUAGGAAGUCGGAUGGA&UCCAU--GAUUUUUU-UAUUCCUU	3	0.999999936974234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN393_c0_g2_576_TPlot.pdf
TRINITY_DN393_c0_g2:815	si_a407	TRINITY_DN393_c0_g2	804	824	815	-19.80	-13.20	0.666666666666667	10.5	1-16,824-809	17-21,808-804[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGCUUGAUGUAAAUAGAGCGG&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN393_c0_g2_815_TPlot.pdf
TRINITY_DN393_c0_g2:816	si_a406	TRINITY_DN393_c0_g2	805	825	816	-19.80	-14.80	0.747474747474748	10	1-17,825-809	18-21,808-805[UP3]	....(((((((((((((((((&)))))))))))))))))....	GCUUGAUGUAAAUAGAGCGGU&AUUGUUUUGUUUAUAUUUAAA	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN393_c0_g2_816_TPlot.pdf
TRINITY_DN393_c0_g2:817	si_a405	TRINITY_DN393_c0_g2	806	826	817	-19.80	-15.10	0.762626262626263	10	2-18,825-809	1-1,826-826[UP5];19-21,808-806[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CUUGAUGUAAAUAGAGCGGUG&AAUUGUUUUGUUUAUAUUUAA	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN393_c0_g2_817_TPlot.pdf
TRINITY_DN393_c0_g3:2523	si_s83	TRINITY_DN393_c0_g3	2512	2535	2523	-30.90	-20.20	0.653721682847896	15.5	5-9,2531-2527;10-21,2523-2512	1-4,2535-2532[UP5];x-x,2526-2524[BULt]	((((((((((((...(((((....&....)))))---))))))))))))	GGAGAAGAAGAGUCCGGGAAUAUA&UUCUUUCCU---UUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN393_c0_g3_2523_TPlot.pdf
TRINITY_DN393_c0_g3:3040	si_s702	TRINITY_DN393_c0_g3	3029	3054	3040	-32.20	-21.00	0.652173913043478	13	1-6,3054-3049;7-21,3043-3029	x-x,3048-3044[BULt]	(((((((((((((((.....((((((&))))))-----)))))))))))))))	CCUGUUUAUUAAUAAUUUCUAUUGGC&GUCGAU-----UUAUUAGUGAACAGG	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s702_TRINITY_DN393_c0_g3_3040_TPlot.pdf
TRINITY_DN393_c0_g3:5538	si_a706	TRINITY_DN393_c0_g3	5527	5548	5538	-30.30	-20.52	0.677227722772277	9.5	2-6,5547-5543;10-21,5538-5527	1-1,5548-5548[UP5];7-9,5542-5539[AILt]	((((((((((((....(((((.&.)))))-...))))))))))))	UGAUUAUUUUGGUGGAGUACCG&UGGUAC-AUUCCAAAAUAAUCG	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a706_TRINITY_DN393_c0_g3_5538_TPlot.pdf
TRINITY_DN393_c0_g3:5539	si_a705	TRINITY_DN393_c0_g3	5528	5549	5539	-30.50	-22.92	0.751475409836066	9	1-7,5549-5543;11-21,5538-5528	8-10,5542-5539[AILt]	(((((((((((....(((((((&)))))))-...)))))))))))	GAUUAUUUUGGUGGAGUACCGG&CUGGUAC-AUUCCAAAAUAAUC	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN393_c0_g3_5539_TPlot.pdf
TRINITY_DN393_c0_g3:5931	si_s777	TRINITY_DN393_c0_g3	5920	5940	5931	-26.60	-18.50	0.695488721804511	7	3-15,5938-5926;17-20,5924-5921	1-2,5940-5939[UP5];16-16,5925-5925[SIL];21-21,5920-5920[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AUUGUAUUAUAGCGGUAGUCA&UUACUAUUGCUAUAAAACAAG	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN393_c0_g3_5931_TPlot.pdf
TRINITY_DN393_c0_g3:6926	si_a475	TRINITY_DN393_c0_g3	6916	6935	6926	-23.50	-16.70	0.71063829787234	6	2-14,6934-6922;16-19,6921-6918	1-1,6935-6935[UP5];15-15,x-x[BULq];20-21,6917-6916[UP3]	..((((-(((((((((((((.&.))))))))))))).))))..	CGCUGU-UGACAAUGAUUACG&UGUAAUUAUUGUUAUAUAGAA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN393_c0_g3_6926_TPlot.pdf
TRINITY_DN393_c0_g3:888	si_s483	TRINITY_DN393_c0_g3	877	897	888	-21.40	-14.50	0.677570093457944	7	1-12,897-886;14-17,884-881	13-13,885-885[SIL];18-21,880-877[UP3]	....((((.((((((((((((&)))))))))))).))))....	AAGUUUUAUAUAGAUAUGGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN393_c0_g3_888_TPlot.pdf
TRINITY_DN393_c0_g3:890	si_s481	TRINITY_DN393_c0_g3	879	899	890	-23.00	-16.80	0.730434782608696	5.5	1-14,899-886;16-19,884-881	15-15,885-885[SIL];20-21,880-879[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GUUUUAUAUAGAUAUGGGAUU&GAUCCUAUAUUUAUUUAAAUA	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN393_c0_g3_890_TPlot.pdf
TRINITY_DN393_c0_g3:891	si_s480	TRINITY_DN393_c0_g3	880	900	891	-25.00	-17.10	0.684	6	2-15,899-886;17-20,884-881	1-1,900-900[UP5];16-16,885-885[SIL];21-21,880-880[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	UUUUAUAUAGAUAUGGGAUUG&GGAUCCUAUAUUUAUUUAAAU	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN393_c0_g3_891_TPlot.pdf
TRINITY_DN393_c0_g4:138	si_s1	TRINITY_DN393_c0_g4	127	147	138	-18.70	-13.40	0.716577540106952	7.5	1-15,147-133	16-21,132-127[UP3]	......(((((((((((((((&)))))))))))))))......	AUCUUUUAGGUGAUAUAAAAA&UUUUUAUAUUACUUAUUAUUA	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN393_c0_g4_138_TPlot.pdf
TRINITY_DN393_c0_g4:1673	si_a351	TRINITY_DN393_c0_g4	1662	1682	1673	-20.50	-14.60	0.712195121951219	10	4-14,1679-1669;16-21,1667-1662	1-3,1682-1680[UP5];15-15,1668-1668[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GUCAGACUAGGAUUGAUGGAU&AAAUAUUAAUUCUAUUUUGAU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN393_c0_g4_1673_TPlot.pdf
TRINITY_DN393_c0_g4:1674	si_a350	TRINITY_DN393_c0_g4	1663	1683	1674	-20.30	-13.20	0.650246305418719	11.5	5-15,1679-1669;17-21,1667-1663	1-4,1683-1680[UP5];16-16,1668-1668[SIL]	(((((.(((((((((((....&....))))))))))).)))))	UCAGACUAGGAUUGAUGGAUU&AAAAUAUUAAUUCUAUUUUGA	4	0.999999786133772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN393_c0_g4_1674_TPlot.pdf
TRINITY_DN393_c0_g4:2635	si_s347	TRINITY_DN393_c0_g4	2624	2644	2635	-33.70	-23.60	0.700296735905044	5.5	1-2,2644-2643;4-10,2641-2635;12-21,2633-2624	3-3,2642-2642[SIL];11-11,2634-2634[SIL]	((((((((((.(((((((.((&)).))))))).))))))))))	UCUGUUUCUUCAUCUUCCGGU&ACGGGGAGAUAAAGAAAUAGA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s347_TRINITY_DN393_c0_g4_2635_TPlot.pdf
TRINITY_DN393_c0_g4:46	si_a412	TRINITY_DN393_c0_g4	34	55	46	-18.30	-11.90	0.650273224043716	7	1-13,55-43;15-18,40-37	14-14,42-41[AILt];19-21,36-34[UP3]	...((((..(((((((((((((&)))))))))))))-.))))...	CCAUUAUGCUAGAUAUAAACGA&UUGUUUAUAUUUA-AAUAAAUA	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN393_c0_g4_46_TPlot.pdf
TRINITY_DN393_c0_g4:48	si_a410	TRINITY_DN393_c0_g4	36	57	48	-17.80	-13.60	0.764044943820225	5.5	1-15,57-43;17-20,40-37	16-16,42-41[AILt];21-21,36-36[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	AUUAUGCUAGAUAUAAACGAGA&UUUUGUUUAUAUUUA-AAUAAA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN393_c0_g4_48_TPlot.pdf
TRINITY_DN393_c0_g4:932	si_a319	TRINITY_DN393_c0_g4	921	941	932	-22.40	-14.90	0.665178571428572	8	3-7,939-935;9-21,933-921	1-2,941-940[UP5];8-8,934-934[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AAUGGAAAAGUUAAGGAUAUU&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN393_c0_g4_932_TPlot.pdf
TRINITY_DN393_c0_g5:108	si_s72	TRINITY_DN393_c0_g5	97	118	108	-24.10	-18.50	0.767634854771784	8	1-9,118-110;11-19,107-99	10-10,109-108[AILt];20-21,98-97[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	UUGGAAAGAAGUUAGAAUAGAA&UUCUAUUUU-UUUUCUUUCCUU	3	0.999998713244869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN393_c0_g5_108_TPlot.pdf
TRINITY_DN393_c0_g5:412	si_a547	TRINITY_DN393_c0_g5	402	420	412	-26.90	-19.20	0.713754646840149	9	1-9,420-412;12-20,411-403	10-11,x-x[BULq];21-21,402-402[UP3]	.(((((((((--(((((((((&)))))))))..))))))))).	CGGUAGAGAG--AGAUUGGGC&GUUCAAUCUAUUUCUUUAUCU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN393_c0_g5_412_TPlot.pdf
TRINITY_DN393_c0_g5:441	si_s596	TRINITY_DN393_c0_g5	432	450	441	-30.40	-20.70	0.680921052631579	4	1-13,450-438;17-20,436-433	14-16,437-437[AILq];21-21,432-432[UP3]	.((((.--(((((((((((((&)))))))))))))...)))).	UAAGAA--GCUUGGAUUUAUC&GAUAAAUCCAAGCGAAUCUUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s596_TRINITY_DN393_c0_g5_441_TPlot.pdf
TRINITY_DN393_c0_g5:446	si_s612	TRINITY_DN393_c0_g5	435	461	446	-28.20	-18.80	0.666666666666667	16	1-7,461-455;8-18,448-438	x-x,454-449[BULt];19-21,437-435[UP3]	...(((((((((((......(((((((&)))))))------)))))))))))...	GAAGCUUGGAUUUAUCAAAUAGAAAGA&UCUUUUU------UAAAUCCAAGCGAU	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN393_c0_g5_446_TPlot.pdf
TRINITY_DN393_c0_g5:448	si_s610	TRINITY_DN393_c0_g5	437	463	448	-27.20	-18.80	0.691176470588235	17	3-9,461-455;10-20,448-438	1-2,463-462[UP5];x-x,454-449[BULt];21-21,437-437[UP3]	.(((((((((((......(((((((..&..)))))))------))))))))))).	AGCUUGGAUUUAUCAAAUAGAAAGAGU&AAUCUUUUU------UAAAUCCAAGCG	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN393_c0_g5_448_TPlot.pdf
TRINITY_DN393_c0_g5:91	si_s603	TRINITY_DN393_c0_g5	80	100	91	-27.20	-18.00	0.661764705882353	10	1-12,100-89	13-21,88-80[UP3]	.........((((((((((((&)))))))))))).........	AAAAUAGUUAGAUUUGCUUGG&CCAAGCGAAUCUUUUUUAAAU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN393_c0_g5_91_TPlot.pdf
TRINITY_DN393_c0_g5:92	si_s602	TRINITY_DN393_c0_g5	81	101	92	-28.10	-19.60	0.697508896797153	9	1-13,101-89	14-21,88-81[UP3]	........(((((((((((((&)))))))))))))........	AAAUAGUUAGAUUUGCUUGGA&UCCAAGCGAAUCUUUUUUAAA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN393_c0_g5_92_TPlot.pdf
TRINITY_DN393_c0_g5:921	si_a627	TRINITY_DN393_c0_g5	910	931	921	-29.50	-19.50	0.661016949152542	10.5	1-3,931-929;5-18,926-913	4-4,928-927[AILt];19-21,912-910[UP3]	...((((((((((((((..(((&)))-.))))))))))))))...	UAUGGAUUGGCAUAGUAAAGCC&GGC-GUAUUAUGUCGAUUUUUU	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN393_c0_g5_921_TPlot.pdf
TRINITY_DN39408_c0_g1:159	si_s351	TRINITY_DN39408_c0_g1	148	168	159	-29.50	-19.20	0.650847457627119	5.5	1-12,168-157;14-15,155-154;18-20,151-149	13-13,156-156[SIL];16-17,153-152[SIL];21-21,148-148[UP3]	.(((..((.((((((((((((&)))))))))))).))..))).	CCAAAAUGGUUCUUUGUCUCC&GGAGAUAAAGAAAUAGAUUGA	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s351_TRINITY_DN39408_c0_g1_159_TPlot.pdf
TRINITY_DN3940_c0_g1:1955	si_a134	TRINITY_DN3940_c0_g1	1942	1964	1955	-28.20	-22.36	0.79290780141844	9	1-11,1964-1954;15-21,1948-1942	12-14,1953-1949[AILt]	(((((((.....(((((((((((&)))))))))))--...)))))))	ACAACGAGUCCCGUUACUAUUGC&GCAAUAGUAAU--UAAUCGUUGU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN3940_c0_g1_1955_TPlot.pdf
TRINITY_DN3940_c0_g3:177	si_a787	TRINITY_DN3940_c0_g3	166	194	177	-26.30	-17.10	0.650190114068441	19.5	1-5,194-190;6-15,181-172;17-21,170-166	x-x,189-182[BULt];16-16,171-171[SIL]	(((((.((((((((((........(((((&)))))--------)))))))))).)))))	UGGAACGUAGAAAGGUUGCUUUUAAGAAG&CUUCU--------AUUUUUCUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN3940_c0_g3_177_TPlot.pdf
TRINITY_DN3941_c0_g1:2363	si_a836	TRINITY_DN3941_c0_g1	2352	2372	2363	-24.10	-16.10	0.66804979253112	15.5	8-20,2365-2353	1-7,2372-2366[UP5];21-21,2352-2352[UP3]	.(((((((((((((.......&.......))))))))))))).	AUAGCAGCUUUUAUGCGGGAG&AAAAAAAAUAGAAGUUGCUAA	2	0.990365583261362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN3941_c0_g1_2363_TPlot.pdf
TRINITY_DN3941_c0_g1:2938	si_s92	TRINITY_DN3941_c0_g1	2928	2946	2938	-34.90	-23.50	0.673352435530086	5	2-4,2945-2943;6-12,2942-2936;14-21,2935-2928	1-1,2946-2946[UP5];5-5,x-x[BULq];13-13,x-x[BULq]	((((((((-(((((((-(((.&.))).))))))).))))))))	AUCCGAAG-GAAGAAG-GGAU&UUCUUCUUCUUCGCUUCGGAU	2	0.999999449610897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN3941_c0_g1_2938_TPlot.pdf
TRINITY_DN3941_c0_g1:2941	si_s83	TRINITY_DN3941_c0_g1	2921	2950	2941	-30.90	-20.30	0.656957928802589	15.5	1-3,2950-2948;6-16,2945-2935;17-21,2925-2921	4-5,2947-2946[SIL];x-x,2934-2926[BULt]	(((((.........(((((((((((..(((&)))..)))))))))))---------)))))	GAAGAAAAUCCGAAGGAAGAAGGGAUUGGA&UUCUUUCCUUUCUUCU---------UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN3941_c0_g1_2941_TPlot.pdf
TRINITY_DN3941_c0_g1:2945	si_s79	TRINITY_DN3941_c0_g1	2934	2954	2945	-26.20	-19.70	0.751908396946565	11	4-7,2951-2948;10-21,2945-2934	1-3,2954-2952[UP5];8-9,2947-2946[SIL]	((((((((((((..((((...&...))))..))))))))))))	AGGAAGAAGGGAUUGGAACGG&UUUUUUCUUUCCUUUCUUCUU	2	0.999999847269923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3941_c0_g1_2945_TPlot.pdf
TRINITY_DN3941_c1_g1:467	si_a434	TRINITY_DN3941_c1_g1	456	476	467	-36.40	-24.40	0.67032967032967	8	3-14,474-463;16-19,461-458	1-2,476-475[UP5];15-15,462-462[SIL];20-21,457-456[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UACUUAAGUCCAACGGGUCGG&AGGAUCCGUUGGAUAUGAGAU	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN3941_c1_g1_467_TPlot.pdf
TRINITY_DN3941_c1_g1:468	si_a433	TRINITY_DN3941_c1_g1	457	477	468	-36.60	-24.40	0.666666666666667	9	4-15,474-463;17-20,461-458	1-3,477-475[UP5];16-16,462-462[SIL];21-21,457-457[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	ACUUAAGUCCAACGGGUCGGU&UAGGAUCCGUUGGAUAUGAGA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a433_TRINITY_DN3941_c1_g1_468_TPlot.pdf
TRINITY_DN39420_c0_g1:935	si_a140	TRINITY_DN39420_c0_g1	920	944	935	-25.20	-16.40	0.650793650793651	8	1-8,944-937;10-16,935-929;17-21,924-920	9-9,936-936[SIL];x-x,928-925[BULt]	(((((....(((((((.((((((((&)))))))).)))))))----)))))	GAGAUUUGAGACAACGUUUAAUUAC&GUAAUUAAUCGUUGUU----GUUUU	4	0.999999999153632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN39420_c0_g1_935_TPlot.pdf
TRINITY_DN39423_c0_g1:1394	si_s76	TRINITY_DN39423_c0_g1	1383	1403	1394	-23.60	-15.70	0.665254237288135	10.5	1-15,1403-1389	16-21,1388-1383[UP3]	......(((((((((((((((&)))))))))))))))......	CCAACUGGGGAGAAGAAGGAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN39423_c0_g1_1394_TPlot.pdf
TRINITY_DN39423_c0_g1:1395	si_s75	TRINITY_DN39423_c0_g1	1384	1404	1395	-24.00	-16.80	0.7	9	1-16,1404-1389	17-21,1388-1384[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAACUGGGGAGAAGAAGGAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN39423_c0_g1_1395_TPlot.pdf
TRINITY_DN39423_c0_g1:1396	si_s74	TRINITY_DN39423_c0_g1	1385	1405	1396	-25.00	-17.00	0.68	9	2-17,1404-1389	1-1,1405-1405[UP5];18-21,1388-1385[UP3]	....((((((((((((((((.&.))))))))))))))))....	AACUGGGGAGAAGAAGGAUAU&CUAUUUUUUUUCUUUCCUUUC	0	0.707482213755426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN39423_c0_g1_1396_TPlot.pdf
TRINITY_DN39423_c0_g1:1397	si_s73	TRINITY_DN39423_c0_g1	1386	1406	1397	-24.00	-17.00	0.708333333333333	10	3-18,1404-1389	1-2,1406-1405[UP5];19-21,1388-1386[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACUGGGGAGAAGAAGGAUAUU&UCUAUUUUUUUUCUUUCCUUU	2	0.999999999923917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN39423_c0_g1_1397_TPlot.pdf
TRINITY_DN39426_c0_g1:1545	si_s75	TRINITY_DN39426_c0_g1	1533	1554	1545	-24.00	-16.60	0.691666666666667	11.5	5-15,1550-1540;16-21,1538-1533	1-4,1554-1551[UP5];x-x,1539-1539[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GGAAAGCGAAAGGGAAGAUGGA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN39426_c0_g1_1545_TPlot.pdf
TRINITY_DN39426_c0_g1:1554	si_s796	TRINITY_DN39426_c0_g1	1543	1564	1554	-30.30	-21.50	0.70957095709571	7.5	1-9,1564-1556;10-18,1554-1546;20-21,1544-1543	x-x,1555-1555[BULt];19-19,1545-1545[SIL]	((.(((((((((.(((((((((&)))))))))-))))))))).))	AGGGAAGAUGGAUGUACGAGUU&AGCUCGUAU-UUUAUCUUCGUU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN39426_c0_g1_1554_TPlot.pdf
TRINITY_DN39426_c0_g1:1923	si_a500	TRINITY_DN39426_c0_g1	1912	1931	1923	-34.40	-22.50	0.654069767441861	5.5	1-7,1931-1925;9-16,1924-1917;19-21,1914-1912	8-8,x-x[BULq];17-18,1916-1915[SIL]	(((..((((((((-(((((((&))))))).))))))))..)))	UUCUCGGAAGACG-AAGACGA&UCGUUUUUCGUCUUCCUUGGA	4	0.999999999987448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN39426_c0_g1_1923_TPlot.pdf
TRINITY_DN39426_c0_g1:1924	si_a499	TRINITY_DN39426_c0_g1	1913	1932	1924	-35.20	-23.10	0.65625	7.5	1-8,1932-1925;10-17,1924-1917	9-9,x-x[BULq];18-21,1916-1913[UP3]	....((((((((-((((((((&)))))))).))))))))....	UCUCGGAAGACG-AAGACGAU&GUCGUUUUUCGUCUUCCUUGG	4	0.999999999998988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN39426_c0_g1_1924_TPlot.pdf
TRINITY_DN39426_c0_g1:1927	si_a495	TRINITY_DN39426_c0_g1	1917	1936	1927	-31.90	-23.60	0.739811912225705	8	4-12,1933-1925;14-21,1924-1917	1-3,1936-1934[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GGAAGACG-AAGACGAUACUG&AUAUGUCGUUUUUCGUCUUCC	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN39426_c0_g1_1927_TPlot.pdf
TRINITY_DN39426_c0_g1:962	si_a397	TRINITY_DN39426_c0_g1	950	971	962	-24.00	-15.90	0.6625	8	1-10,971-962;11-17,960-954	x-x,961-961[BULt];18-21,953-950[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AGAAAGGACAACUUCUGUAUUC&GAAUAUAGAA-UUGUUUUGUUU	2	0.999094643521448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN39426_c0_g1_962_TPlot.pdf
TRINITY_DN3942_c0_g1:1810	si_s820	TRINITY_DN3942_c0_g1	1799	1819	1810	-22.10	-14.50	0.656108597285068	10	2-16,1818-1804	1-1,1819-1819[UP5];17-21,1803-1799[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACAUGUUCAUUGUUAGGGGAU&UUUUCUUAAUAAUGAAAAACA	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN3942_c0_g1_1810_TPlot.pdf
TRINITY_DN3942_c0_g1:1814	si_s816	TRINITY_DN3942_c0_g1	1803	1824	1814	-24.90	-16.50	0.662650602409639	8.5	1-3,1824-1822;4-4,1820-1820;6-20,1818-1804	x-x,1821-1821[BULt];5-5,1819-1819[SIL];21-21,1803-1803[UP3]	.(((((((((((((((.(.(((&)))-).))))))))))))))).	GUUCAUUGUUAGGGGAUGAGUA&UAC-CUUUUCUUAAUAAUGAAA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN3942_c0_g1_1814_TPlot.pdf
TRINITY_DN39434_c0_g1:952	si_s804	TRINITY_DN39434_c0_g1	941	961	952	-27.90	-18.20	0.652329749103943	6.5	1-3,961-959;5-13,957-949;15-21,947-941	4-4,958-958[SIL];14-14,948-948[SIL]	(((((((.(((((((((.(((&))).))))))))).)))))))	GAAAGGGCAAUGGAGAUCAGA&UUUUAUCUUCGUUACCUUUUC	4	0.999999999999975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN39434_c0_g1_952_TPlot.pdf
TRINITY_DN39434_c0_g1:981	si_a364	TRINITY_DN39434_c0_g1	970	990	981	-27.70	-18.80	0.67870036101083	11.5	3-14,988-977	1-2,990-989[UP5];15-21,976-970[UP3]	.......((((((((((((..&..)))))))))))).......	AUACGCAGGUCCGAUCAGAGA&AUUUUGAUCGGAUCAAAAAUG	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN39434_c0_g1_981_TPlot.pdf
TRINITY_DN3944_c0_g1:1095	si_s16	TRINITY_DN3944_c0_g1	1084	1104	1095	-25.60	-18.30	0.71484375	2.5	1-12,1104-1093;15-21,1090-1084	13-14,1092-1091[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	UUGUAAUAUAUAUAGUAAUAA&UUAUUACUAUAUUGAUUGCAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN3944_c0_g1_1095_TPlot.pdf
TRINITY_DN3944_c0_g1:1096	si_s15	TRINITY_DN3944_c0_g1	1085	1105	1096	-25.60	-18.40	0.71875	2.5	1-13,1105-1093;16-21,1090-1085	14-15,1092-1091[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UGUAAUAUAUAUAGUAAUAAU&AUUAUUACUAUAUUGAUUGCA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN3944_c0_g1_1096_TPlot.pdf
TRINITY_DN3944_c0_g1:1101	si_s10	TRINITY_DN3944_c0_g1	1090	1110	1101	-23.80	-15.80	0.663865546218487	5	1-4,1110-1107;6-18,1105-1093	5-5,1106-1106[SIL];19-21,1092-1090[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UAUAUAUAGUAAUAAUUAGUA&UACUUAUUAUUACUAUAUUGA	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN3944_c0_g1_1101_TPlot.pdf
TRINITY_DN3944_c0_g1:1105	si_s6	TRINITY_DN3944_c0_g1	1094	1114	1105	-21.70	-15.70	0.723502304147465	7	4-8,1111-1107;10-21,1105-1094	1-3,1114-1112[UP5];9-9,1106-1106[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UAUAGUAAUAAUUAGUAAAAA&AUAUUACUUAUUAUUACUAUA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN3944_c0_g1_1105_TPlot.pdf
TRINITY_DN3944_c0_g1:1201	si_s8	TRINITY_DN3944_c0_g1	1190	1210	1201	-21.30	-15.70	0.737089201877934	6	3-6,1208-1205;8-20,1203-1191	1-2,1210-1209[UP5];7-7,1204-1204[SIL];21-21,1190-1190[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UAUAUAGUAAUAAUUAGUACU&AUUACUUAUUAUUACUAUAUU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN3944_c0_g1_1201_TPlot.pdf
TRINITY_DN3944_c0_g1:1203	si_s6	TRINITY_DN3944_c0_g1	1192	1212	1203	-21.70	-15.00	0.691244239631336	4	1-3,1212-1210;5-8,1208-1205;10-21,1203-1192	4-4,1209-1209[SIL];9-9,1204-1204[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	UAUAGUAAUAAUUAGUACUAU&AUAUUACUUAUUAUUACUAUA	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN3944_c0_g1_1203_TPlot.pdf
TRINITY_DN3944_c0_g1:1290	si_s8	TRINITY_DN3944_c0_g1	1279	1299	1290	-21.30	-15.70	0.737089201877934	6	3-6,1297-1294;8-20,1292-1280	1-2,1299-1298[UP5];7-7,1293-1293[SIL];21-21,1279-1279[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UAUAUAGUAAUAAUUAGUACU&AUUACUUAUUAUUACUAUAUU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN3944_c0_g1_1290_TPlot.pdf
TRINITY_DN3944_c0_g1:1292	si_s6	TRINITY_DN3944_c0_g1	1281	1301	1292	-21.70	-15.00	0.691244239631336	4	1-3,1301-1299;5-8,1297-1294;10-21,1292-1281	4-4,1298-1298[SIL];9-9,1293-1293[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	UAUAGUAAUAAUUAGUACUAU&AUAUUACUUAUUAUUACUAUA	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN3944_c0_g1_1292_TPlot.pdf
TRINITY_DN39450_c0_g1:437	si_s628	TRINITY_DN39450_c0_g1	426	447	437	-35.40	-23.40	0.661016949152542	6.5	1-4,447-444;5-8,442-439;10-15,437-432;17-21,430-426	x-x,443-443[BULt];9-9,438-438[SIL];16-16,431-431[SIL]	(((((.((((((.((((.((((&))))-)))).)))))).)))))	GAACGACUACGACGAGAUUCGC&GCGA-UCUUUUCGUAGGCGUUU	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN39450_c0_g1_437_TPlot.pdf
TRINITY_DN39450_c0_g1:808	si_a364	TRINITY_DN39450_c0_g1	797	817	808	-27.70	-20.50	0.740072202166065	8	1-14,817-804	15-21,803-797[UP3]	.......((((((((((((((&)))))))))))))).......	GCGAGACGAUCCGAUCGAAAU&AUUUUGAUCGGAUCAAAAAUG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN39450_c0_g1_808_TPlot.pdf
TRINITY_DN39450_c0_g1:810	si_a362	TRINITY_DN39450_c0_g1	799	819	810	-28.00	-20.50	0.732142857142857	9	3-16,817-804	1-2,819-818[UP5];17-21,803-799[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAGACGAUCCGAUCGAAAUUU&CUAUUUUGAUCGGAUCAAAAA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN39450_c0_g1_810_TPlot.pdf
TRINITY_DN39450_c0_g1:813	si_a359	TRINITY_DN39450_c0_g1	802	822	813	-29.20	-20.50	0.702054794520548	12	6-19,817-804	1-5,822-818[UP5];20-21,803-802[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACGAUCCGAUCGAAAUUUCUG&AUUCUAUUUUGAUCGGAUCAA	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN39450_c0_g1_813_TPlot.pdf
TRINITY_DN39450_c0_g1:814	si_a358	TRINITY_DN39450_c0_g1	803	823	814	-29.10	-20.50	0.70446735395189	13	7-20,817-804	1-6,823-818[UP5];21-21,803-803[UP3]	.((((((((((((((......&......)))))))))))))).	CGAUCCGAUCGAAAUUUCUGA&AAUUCUAUUUUGAUCGGAUCA	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN39450_c0_g1_814_TPlot.pdf
TRINITY_DN39454_c0_g1:169	si_s70	TRINITY_DN39454_c0_g1	160	178	169	-25.80	-20.20	0.782945736434108	6	2-12,177-167;15-21,166-160	1-1,178-178[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	GGAAAGA--GAGAGUAGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN39454_c0_g1_169_TPlot.pdf
TRINITY_DN3945_c0_g1:774	si_s550	TRINITY_DN3945_c0_g1	763	783	774	-20.30	-13.80	0.679802955665025	12	6-20,778-764	1-5,783-779[UP5];21-21,763-763[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGGAUAUUAGUUCUAUGGAUC&UCAAAAUAGAAUUAAUAUUUU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN3945_c0_g1_774_TPlot.pdf
TRINITY_DN39464_c0_g1:357	si_s73	TRINITY_DN39464_c0_g1	347	367	357	-24.00	-17.00	0.708333333333333	6.5	1-5,367-363;6-15,361-352;17-21,351-347	x-x,362-362[BULt];16-16,x-x[BULq]	(((((-((((((((((.(((((&)))))-)))))))))).)))))	AGAGG-AAGAAGAAGACGUAGA&UCUAU-UUUUUUUCUUUCCUUU	2	0.999999999971538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN39464_c0_g1_357_TPlot.pdf
TRINITY_DN39464_c0_g1:358	si_s72	TRINITY_DN39464_c0_g1	348	368	358	-24.10	-16.40	0.680497925311203	7.5	2-6,367-363;7-16,361-352;18-21,351-348	1-1,368-368[UP5];x-x,362-362[BULt];17-17,x-x[BULq]	((((-((((((((((.(((((.&.)))))-)))))))))).))))	GAGG-AAGAAGAAGACGUAGAC&UUCUAU-UUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN39464_c0_g1_358_TPlot.pdf
TRINITY_DN3947_c0_g1:3351	si_s630	TRINITY_DN3947_c0_g1	3341	3359	3351	-35.60	-23.70	0.665730337078652	8	1-2,3359-3358;4-10,3357-3351;12-21,3350-3341	3-3,x-x[BULq];11-11,x-x[BULq]	((((((((((-(((((((-((&)).))))))).))))))))))	GCGGACGCCU-UGGGAAG-UC&GAUCUUUUCGUAGGCGUUUGC	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN3947_c0_g1_3351_TPlot.pdf
TRINITY_DN39485_c0_g1:191	si_a154	TRINITY_DN39485_c0_g1	180	200	191	-27.00	-17.60	0.651851851851852	11	3-9,198-192;11-18,190-183	1-2,200-199[UP5];10-10,191-191[SIL];19-21,182-180[UP3]	...((((((((.(((((((..&..))))))).))))))))...	UCGAGAUUGACGUUGAGAUCG&UUGUUUUAAGGUCAAUCUAUU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN39485_c0_g1_191_TPlot.pdf
TRINITY_DN39485_c0_g1:594	si_a68	TRINITY_DN39485_c0_g1	583	604	594	-25.40	-18.30	0.720472440944882	7	1-8,604-597;9-10,595-594;12-20,592-584	x-x,596-596[BULt];11-11,593-593[SIL];21-21,583-583[UP3]	.(((((((((.((.((((((((&))))))))-)).))))))))).	AGAAGAGCAAGUUCGAAAGGAG&CUUCUUUC-AAAUUGUUUUUCA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN39485_c0_g1_594_TPlot.pdf
TRINITY_DN39485_c0_g1:855	si_a899	TRINITY_DN39485_c0_g1	844	864	855	-18.70	-13.60	0.727272727272727	5	1-3,864-862;5-21,860-844	4-4,861-861[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	UUUUUGUGUUAUUUGUUUUUA&UAAUAAUAAGUAAUAUAAAAA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN39485_c0_g1_855_TPlot.pdf
TRINITY_DN39485_c0_g1:856	si_a898	TRINITY_DN39485_c0_g1	845	865	856	-20.50	-16.30	0.795121951219512	5	1-4,865-862;6-21,860-845	5-5,861-861[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	UUUUGUGUUAUUUGUUUUUAC&GUAAUAAUAAGUAAUAUAAAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN39485_c0_g1_856_TPlot.pdf
TRINITY_DN39485_c0_g1:857	si_a897	TRINITY_DN39485_c0_g1	846	866	857	-21.20	-15.50	0.731132075471698	6	2-5,865-862;7-21,860-846	1-1,866-866[UP5];6-6,861-861[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	UUUGUGUUAUUUGUUUUUACA&AGUAAUAAUAAGUAAUAUAAA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN39485_c0_g1_857_TPlot.pdf
TRINITY_DN39485_c0_g1:858	si_a896	TRINITY_DN39485_c0_g1	847	867	858	-21.60	-14.60	0.675925925925926	7.5	3-6,865-862;8-21,860-847	1-2,867-866[UP5];7-7,861-861[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UUGUGUUAUUUGUUUUUACAU&UAGUAAUAAUAAGUAAUAUAA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN39485_c0_g1_858_TPlot.pdf
TRINITY_DN39487_c0_g1:234	si_s699	TRINITY_DN39487_c0_g1	222	244	234	-28.60	-19.80	0.692307692307692	8	3-9,242-236;10-14,234-230;15-21,228-222	1-2,244-243[UP5];x-x,235-235[BULt];x-x,229-229[BULt]	(((((((.(((((.(((((((..&..)))))))-)))))-)))))))	GUUCGCUGGAUGAUAUCGACUUG&UUAGUCGAU-UUAUU-AGUGAAC	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN39487_c0_g1_234_TPlot.pdf
TRINITY_DN3948_c0_g1:56	si_a837	TRINITY_DN3948_c0_g1	45	65	56	-25.80	-16.80	0.651162790697674	14	8-18,58-48;20-21,46-45	1-7,65-59[UP5];19-19,47-47[SIL]	((.(((((((((((.......&.......))))))))))).))	GUCAGCAACUUCUAAUACCAC&AAAAAAAUAGAAGUUGCUAAC	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN3948_c0_g1_56_TPlot.pdf
TRINITY_DN3948_c0_g1:57	si_a836	TRINITY_DN3948_c0_g1	46	66	57	-24.10	-16.00	0.663900414937759	17	9-19,58-48	1-8,66-59[UP5];20-21,47-46[UP3]	..(((((((((((........&........)))))))))))..	UCAGCAACUUCUAAUACCACG&AAAAAAAAUAGAAGUUGCUAA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN3948_c0_g1_57_TPlot.pdf
TRINITY_DN39492_c0_g1:664	si_a489	TRINITY_DN39492_c0_g1	653	677	664	-27.70	-18.78	0.677978339350181	13	1-6,677-672;8-21,666-653	7-7,671-667[AILt]	((((((((((((((.....((((((&))))))----.))))))))))))))	CGAAAAACGACAUGACAAAUUUGUA&UAUAGA----AUAUGUCGUUUUUCG	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN39492_c0_g1_664_TPlot.pdf
TRINITY_DN39492_c0_g1:727	si_s82	TRINITY_DN39492_c0_g1	710	740	727	-28.90	-18.80	0.650519031141869	24	1-6,740-735;7-11,730-726;12-21,719-710	x-x,734-731[BULt];x-x,725-720[BULt]	((((((((((......(((((....((((((&))))))----)))))------))))))))))	AAGAGGAGGAAUUACAGAGGACAAUGAGAGA&UUUCUU----UCCUU------UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN39492_c0_g1_727_TPlot.pdf
TRINITY_DN39492_c0_g1:728	si_s81	TRINITY_DN39492_c0_g1	711	741	728	-28.90	-18.80	0.650519031141869	24	1-7,741-735;8-12,730-726;13-21,719-711	x-x,734-731[BULt];x-x,725-720[BULt]	(((((((((......(((((....(((((((&)))))))----)))))------)))))))))	AGAGGAGGAAUUACAGAGGACAAUGAGAGAA&UUUUCUU----UCCUU------UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN39492_c0_g1_728_TPlot.pdf
TRINITY_DN394_c0_g1:2194	si_s99	TRINITY_DN394_c0_g1	2183	2204	2194	-34.60	-25.90	0.748554913294798	7.5	1-7,2204-2198;8-17,2196-2187	x-x,2197-2197[BULt];18-21,2186-2183[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	UGGACCAGUCCGAAGGUGAAGA&UCUUCGC-UUCGGAUUGGAAAA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN394_c0_g1_2194_TPlot.pdf
TRINITY_DN394_c0_g1:2249	si_s21	TRINITY_DN394_c0_g1	2238	2258	2249	-27.40	-18.50	0.675182481751825	8.5	1-16,2258-2243	17-21,2242-2238[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGAUAUUGUAGUCGGUAUAGU&ACUAUAUUGAUUGCAACUAAA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN394_c0_g1_2249_TPlot.pdf
TRINITY_DN39505_c0_g1:32	si_s496	TRINITY_DN39505_c0_g1	21	41	32	-21.70	-14.70	0.67741935483871	4.5	1-12,41-30;14-19,28-23	13-13,29-29[SIL];20-21,22-21[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AUAUUGUUAUGUUUAUGUUUG&UAAAUAUAAACAAAACAAUUC	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN39505_c0_g1_32_TPlot.pdf
TRINITY_DN39505_c0_g1:35	si_s493	TRINITY_DN39505_c0_g1	24	44	35	-19.80	-16.40	0.828282828282828	4	2-15,43-30;17-21,28-24	1-1,44-44[UP5];16-16,29-29[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	UUGUUAUGUUUAUGUUUGAAA&AUUUAAAUAUAAACAAAACAA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN39505_c0_g1_35_TPlot.pdf
TRINITY_DN39505_c0_g1:36	si_s492	TRINITY_DN39505_c0_g1	25	45	36	-20.10	-15.60	0.776119402985075	6	3-16,43-30;18-21,28-25	1-2,45-44[UP5];17-17,29-29[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UGUUAUGUUUAUGUUUGAAAG&UAUUUAAAUAUAAACAAAACA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN39505_c0_g1_36_TPlot.pdf
TRINITY_DN3950_c0_g3:979	si_a637	TRINITY_DN3950_c0_g3	967	988	979	-25.80	-17.70	0.686046511627907	6.5	1-14,988-975;15-17,973-971	x-x,974-974[BULt];18-21,970-967[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	GUUGUACGUCAGAAAAAUCGAU&GUCGAUUUUUUUGA-GUAAUAU	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN3950_c0_g3_979_TPlot.pdf
TRINITY_DN3950_c0_g3:980	si_a636	TRINITY_DN3950_c0_g3	968	989	980	-26.30	-17.70	0.673003802281369	7	2-15,988-975;16-18,973-971	1-1,989-989[UP5];x-x,974-974[BULt];19-21,970-968[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	UUGUACGUCAGAAAAAUCGAUU&UGUCGAUUUUUUUGA-GUAAUA	4	0.999999869687671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN3950_c0_g3_980_TPlot.pdf
TRINITY_DN3950_c6_g1:3718	si_a236	TRINITY_DN3950_c6_g1	3707	3728	3718	-35.00	-27.40	0.782857142857143	7.5	1-2,3728-3727;4-20,3724-3708	3-3,3726-3725[AILt];21-21,3707-3707[UP3]	.(((((((((((((((((..((&))-.))))))))))))))))).	AGGGGGUCGGAUUGAUUGGAAG&CU-AUAAUCAAUUCGAUCCCCC	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN3950_c6_g1_3718_TPlot.pdf
TRINITY_DN3950_c6_g1:3861	si_s71	TRINITY_DN3950_c6_g1	3850	3871	3861	-25.70	-16.80	0.653696498054475	9	1-3,3871-3869;4-7,3867-3864;10-21,3861-3850	x-x,3868-3868[BULt];8-9,3863-3862[SIL]	((((((((((((..((((.(((&)))-))))..))))))))))))	AGGGAAGGAAAACUGUGGCAAG&CUU-CUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3950_c6_g1_3861_TPlot.pdf
TRINITY_DN39516_c0_g1:70	si_a147	TRINITY_DN39516_c0_g1	61	79	70	-30.40	-20.60	0.677631578947368	7	1-11,79-69;14-20,68-62	12-13,x-x[BULq];21-21,61-61[UP3]	.(((((((--(((((((((((&)))))))))))..))))))).	AGACCUUA--AUAGCAAUGAU&AUCGUUGUUGUUUUAAGGUCA	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN39516_c0_g1_70_TPlot.pdf
TRINITY_DN39522_c0_g1:402	si_s629	TRINITY_DN39522_c0_g1	391	411	402	-34.60	-23.10	0.667630057803468	6.5	1-10,411-402;12-14,400-398;16-20,396-392	11-11,401-401[SIL];15-15,397-397[SIL];21-21,391-391[UP3]	.(((((.(((.((((((((((&)))))))))).))).))))).	GAAGCGGCUGAGAAAAGAUUG&CGAUCUUUUCGUAGGCGUUUG	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN39522_c0_g1_402_TPlot.pdf
TRINITY_DN39523_c0_g1:1879	si_s69	TRINITY_DN39523_c0_g1	1868	1894	1879	-23.40	-15.82	0.676068376068376	19.5	1-9,1894-1886;13-21,1876-1868	10-12,1885-1877[AILt]	(((((((((.........(((((((((&)))))))))------...)))))))))	GAAAGAGAAUCAGAAUGUGUAGAAGUU&AACUUCUAU------UUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN39523_c0_g1_1879_TPlot.pdf
TRINITY_DN39523_c0_g1:3230	si_a351	TRINITY_DN39523_c0_g1	3219	3239	3230	-20.50	-16.30	0.795121951219512	5.5	1-5,3239-3235;7-19,3233-3221	6-6,3234-3234[SIL];20-21,3220-3219[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	ACCAAAGUAGAGUUAUUAUUU&AAAUAUUAAUUCUAUUUUGAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN39523_c0_g1_3230_TPlot.pdf
TRINITY_DN39523_c0_g1:3232	si_a349	TRINITY_DN39523_c0_g1	3221	3241	3232	-21.30	-15.70	0.737089201877934	6.5	3-7,3239-3235;9-21,3233-3221	1-2,3241-3240[UP5];8-8,3234-3234[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	CAAAGUAGAGUUAUUAUUUCG&GAAAAUAUUAAUUCUAUUUUG	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN39523_c0_g1_3232_TPlot.pdf
TRINITY_DN3952_c0_g1:1509	si_a641	TRINITY_DN3952_c0_g1	1498	1518	1509	-23.60	-15.96	0.676271186440678	5	1-15,1518-1504;20-21,1499-1498	16-19,1503-1500[SIL]	((....(((((((((((((((&)))))))))))))))....))	CGCAGGAUUACUCAAAAGAAU&AUUUUUUUGAGUAAUAUAUCG	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN3952_c0_g1_1509_TPlot.pdf
TRINITY_DN3952_c0_g1:1512	si_a638	TRINITY_DN3952_c0_g1	1501	1521	1512	-24.40	-19.00	0.778688524590164	7	3-18,1519-1504	1-2,1521-1520[UP5];19-21,1503-1501[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGGAUUACUCAAAAGAAUCUU&UCGAUUUUUUUGAGUAAUAUA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN3952_c0_g1_1512_TPlot.pdf
TRINITY_DN3952_c0_g1:1513	si_a637	TRINITY_DN3952_c0_g1	1502	1522	1513	-25.80	-19.00	0.736434108527132	8	4-19,1519-1504	1-3,1522-1520[UP5];20-21,1503-1502[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGAUUACUCAAAAGAAUCUUG&GUCGAUUUUUUUGAGUAAUAU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN3952_c0_g1_1513_TPlot.pdf
TRINITY_DN3952_c0_g1:1514	si_a636	TRINITY_DN3952_c0_g1	1503	1523	1514	-26.30	-19.00	0.722433460076046	9	5-20,1519-1504	1-4,1523-1520[UP5];21-21,1503-1503[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAUUACUCAAAAGAAUCUUGU&UGUCGAUUUUUUUGAGUAAUA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN3952_c0_g1_1514_TPlot.pdf
TRINITY_DN39537_c0_g1:1026	si_s91	TRINITY_DN39537_c0_g1	1014	1035	1026	-34.70	-23.20	0.668587896253602	9.5	4-15,1032-1021;16-19,1019-1016	1-3,1035-1033[UP5];x-x,1020-1020[BULt];20-21,1015-1014[UP3]	..((((.((((((((((((...&...))))))))))))-))))..	GGCGAGUGCGAAGAAGGAGUUA&UUUCUUCUUCUUCGC-UUCGGA	3	0.999999999999873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN39537_c0_g1_1026_TPlot.pdf
TRINITY_DN39537_c0_g1:1027	si_s90	TRINITY_DN39537_c0_g1	1015	1036	1027	-35.30	-23.20	0.657223796033994	10.5	5-16,1032-1021;17-20,1019-1016	1-4,1036-1033[UP5];x-x,1020-1020[BULt];21-21,1015-1015[UP3]	.((((.((((((((((((....&....))))))))))))-)))).	GCGAGUGCGAAGAAGGAGUUAA&CUUUCUUCUUCUUCGC-UUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN39537_c0_g1_1027_TPlot.pdf
TRINITY_DN39537_c0_g1:594	si_s88	TRINITY_DN39537_c0_g1	582	603	594	-34.80	-24.00	0.689655172413793	5	1-12,603-592;13-15,590-588;17-21,586-582	x-x,591-591[BULt];16-16,587-587[SIL]	(((((.(((.((((((((((((&))))))))))))-))).)))))	GGAGUCAAGCAAGAAGGAAGGA&UCCUUUCUUCUU-CUUCGCUUC	3	0.999999999744053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN39537_c0_g1_594_TPlot.pdf
TRINITY_DN39537_c0_g1:711	si_s76	TRINITY_DN39537_c0_g1	698	720	711	-23.60	-16.60	0.703389830508475	8	3-15,718-706;16-21,703-698	1-2,720-719[UP5];x-x,705-704[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AAGAAGCCGGGAAGAAGGAAAUG&AUUUUUUUUCUUUCC--UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN39537_c0_g1_711_TPlot.pdf
TRINITY_DN39537_c0_g1:876	si_a113	TRINITY_DN39537_c0_g1	865	885	876	-26.20	-17.20	0.656488549618321	15.5	7-18,879-868	1-6,885-880[UP5];19-21,867-865[UP3]	...((((((((((((......&......))))))))))))...	AAGAAGGCGAGCUCGACGGCA&AAAAUACGAGCUUGUUUUAUA	4	0.999999387155625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN39537_c0_g1_876_TPlot.pdf
TRINITY_DN39548_c0_g1:1793	si_a576	TRINITY_DN39548_c0_g1	1782	1802	1793	-28.70	-18.70	0.651567944250871	7.5	4-21,1799-1782	1-3,1802-1800[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUUUGUUACAAAUAUAUUUG&AUCGUAUGUUUGUAACAAGAA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN39548_c0_g1_1793_TPlot.pdf
TRINITY_DN39549_c0_g1:537	si_s527	TRINITY_DN39549_c0_g1	527	545	537	-28.00	-18.90	0.675	6.5	2-7,544-539;9-10,538-537;12-21,536-527	1-1,545-545[UP5];8-8,x-x[BULq];11-11,x-x[BULq]	((((((((((-((-((((((.&.)))))).)).))))))))))	GGAUCAGAAG-GA-UUCGAAA&AUUCGAAAUCAUUUUUGAUCC	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN39549_c0_g1_537_TPlot.pdf
TRINITY_DN39551_c0_g1:380	si_a70	TRINITY_DN39551_c0_g1	369	388	380	-23.90	-16.40	0.686192468619247	10	1-6,388-383;9-18,381-372	7-8,382-382[AILq];19-21,371-369[UP3]	...((((((((((.-((((((&))))))..))))))))))...	GCAGAAGAGCAGUG-GGAAGA&UCUUUCAAAUUGUUUUUCAUU	0	0.316976722020425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN39551_c0_g1_380_TPlot.pdf
TRINITY_DN39562_c0_g1:1207	si_s88	TRINITY_DN39562_c0_g1	1196	1216	1207	-34.80	-23.30	0.669540229885058	4.5	1-10,1216-1207;12-17,1205-1200;19-21,1198-1196	11-11,1206-1206[SIL];18-18,1199-1199[SIL]	(((.((((((.((((((((((&)))))))))).)))))).)))	GAAAUGAAGGCGAAGAAAGGA&UCCUUUCUUCUUCUUCGCUUC	2	0.999999997548866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN39562_c0_g1_1207_TPlot.pdf
TRINITY_DN39562_c0_g1:1208	si_s87	TRINITY_DN39562_c0_g1	1197	1217	1208	-32.90	-21.40	0.650455927051672	6.5	1-11,1217-1207;13-18,1205-1200	12-12,1206-1206[SIL];19-21,1199-1197[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AAAUGAAGGCGAAGAAAGGAG&UUCCUUUCUUCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN39562_c0_g1_1208_TPlot.pdf
TRINITY_DN39562_c0_g1:1209	si_s86	TRINITY_DN39562_c0_g1	1198	1218	1209	-32.90	-21.90	0.665653495440729	5.5	1-12,1218-1207;14-19,1205-1200	13-13,1206-1206[SIL];20-21,1199-1198[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AAUGAAGGCGAAGAAAGGAGG&UUUCCUUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN39562_c0_g1_1209_TPlot.pdf
TRINITY_DN39568_c0_g1:2705	si_a776	TRINITY_DN39568_c0_g1	2694	2714	2705	-27.10	-22.30	0.822878228782288	6.5	1-7,2714-2708;9-21,2706-2694	8-8,2707-2707[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAAGUGGAGGAGUGGGAUCGG&UUGAUUCAACUCUUCUAUUUU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN39568_c0_g1_2705_TPlot.pdf
TRINITY_DN39568_c0_g1:2789	si_a744	TRINITY_DN39568_c0_g1	2778	2798	2789	-44.40	-28.88	0.65045045045045	8	1-5,2798-2794;7-12,2792-2787;16-19,2783-2780	6-6,2793-2793[SIL];13-15,2786-2784[SIL];20-21,2779-2778[UP3]	..((((...((((((.(((((&))))).))))))...))))..	GCGGAGAGCCGUGGCGAGGGG&CCCCUGGCCAUGAACCUCCUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a744_TRINITY_DN39568_c0_g1_2789_TPlot.pdf
TRINITY_DN3956_c1_g1:2749	si_s79	TRINITY_DN3956_c1_g1	2737	2758	2749	-26.20	-17.60	0.67175572519084	5.5	2-12,2757-2747;14-17,2745-2742;18-21,2740-2737	1-1,2758-2758[UP5];13-13,2746-2746[SIL];x-x,2741-2741[BULt]	((((.((((.(((((((((((.&.))))))))))).))))-))))	AGGGCAGAGUGGAAGGAAAAAG&UUUUUUCUUUCCUUUCU-UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3956_c1_g1_2749_TPlot.pdf
TRINITY_DN3956_c1_g1:2755	si_s73	TRINITY_DN3956_c1_g1	2744	2767	2755	-24.00	-16.40	0.683333333333333	12.5	2-5,2766-2763;6-18,2759-2747	1-1,2767-2767[UP5];x-x,2762-2760[BULt];19-21,2746-2744[UP3]	...(((((((((((((...((((.&.))))---)))))))))))))...	AGUGGAAGGAAAAAGAUCGGUAGG&UCUAU---UUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN3956_c1_g1_2755_TPlot.pdf
TRINITY_DN3956_c1_g1:2756	si_s72	TRINITY_DN3956_c1_g1	2745	2768	2756	-24.10	-18.00	0.746887966804979	11.5	1-6,2768-2763;7-19,2759-2747	x-x,2762-2760[BULt];20-21,2746-2745[UP3]	..(((((((((((((...((((((&))))))---)))))))))))))..	GUGGAAGGAAAAAGAUCGGUAGGA&UUCUAU---UUUUUUUCUUUCCUU	4	0.999999994794446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN3956_c1_g1_2756_TPlot.pdf
TRINITY_DN39574_c0_g1:65	si_s191	TRINITY_DN39574_c0_g1	47	74	65	-26.60	-17.70	0.665413533834586	18	1-10,74-65;11-20,57-48	x-x,64-58[BULt];21-21,47-47[UP3]	.((((((((((.......((((((((((&))))))))))-------)))))))))).	AAUGUUCCAGAAAACUCUGUAAUCGUUA&UAACGAUUAU-------UUUGGAAUGUA	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN39574_c0_g1_65_TPlot.pdf
TRINITY_DN3957_c0_g2:751	si_s71	TRINITY_DN3957_c0_g2	740	760	751	-25.70	-18.00	0.700389105058366	4	1-6,760-755;8-14,753-747;16-21,745-740	7-7,754-754[SIL];15-15,746-746[SIL]	((((((.(((((((.((((((&)))))).))))))).))))))	AGGAAAUAAAAAGAUUAGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999824836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3957_c0_g2_751_TPlot.pdf
TRINITY_DN3958_c0_g1:45	si_s524	TRINITY_DN3958_c0_g1	34	54	45	-23.90	-17.20	0.719665271966527	10.5	6-21,49-34	1-5,54-50[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUGAAGAUGAUUUCGAUUUUA&UUAAUUCGAAAUCAUUUUUGA	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN3958_c0_g1_45_TPlot.pdf
TRINITY_DN3959_c0_g1:327	si_s803	TRINITY_DN3959_c0_g1	315	337	327	-26.00	-17.10	0.657692307692308	7.5	1-6,337-332;7-14,330-323;15-18,321-318	x-x,331-331[BULt];x-x,322-322[BULt];19-21,317-315[UP3]	...((((.((((((((.((((((&))))))-))))))))-))))...	AAUAGGUAGACGAAGAGUAAAGU&AUUUUA-UCUUCGUU-ACCUUUU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN3959_c0_g1_327_TPlot.pdf
TRINITY_DN3959_c0_g1:662	si_a402	TRINITY_DN3959_c0_g1	651	671	662	-22.40	-14.90	0.665178571428572	7.5	1-12,671-660;14-17,658-655	13-13,659-659[SIL];18-21,654-651[UP3]	....((((.((((((((((((&)))))))))))).))))....	AAAUUAAAGAAAGCGAUUCUG&UAGAAUUGUUUUGUUUAUAUU	2	0.999999482818051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN3959_c0_g1_662_TPlot.pdf
TRINITY_DN39605_c0_g1:571	si_a329	TRINITY_DN39605_c0_g1	559	580	571	-29.60	-19.50	0.658783783783784	6.5	1-14,580-567;15-19,565-561	x-x,566-566[BULt];20-21,560-559[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AAGGAUAUAGGAAUGGAAAGAU&AUUUUUUUAUUCCU-UGUCCCG	3	0.999999994333769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN39605_c0_g1_571_TPlot.pdf
TRINITY_DN39605_c0_g1:574	si_a326	TRINITY_DN39605_c0_g1	562	583	574	-26.20	-21.00	0.801526717557252	5.5	2-17,582-567;18-21,565-562	1-1,583-583[UP5];x-x,566-566[BULt]	((((.((((((((((((((((.&.))))))))))))))))-))))	GAUAUAGGAAUGGAAAGAUCAG&AUGAUUUUUUUAUUCCU-UGUC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN39605_c0_g1_574_TPlot.pdf
TRINITY_DN39605_c0_g1:930	si_s319	TRINITY_DN39605_c0_g1	919	940	930	-31.30	-21.50	0.686900958466454	8	2-4,939-937;5-17,935-923	1-1,940-940[UP5];x-x,936-936[BULt];18-21,922-919[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	UGCCUUGUAACAGGAAGAGACU&UGUC-CUUCUUGUUACAAACAU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN39605_c0_g1_930_TPlot.pdf
TRINITY_DN39605_c0_g1:934	si_s315	TRINITY_DN39605_c0_g1	923	944	934	-31.60	-21.20	0.670886075949367	11.5	6-8,939-937;9-21,935-923	1-5,944-940[UP5];x-x,936-936[BULt]	(((((((((((((.(((.....&.....)))-)))))))))))))	UUGUAACAGGAAGAGACUUACU&AUUCUGUC-CUUCUUGUUACAA	2	0.998089543122984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN39605_c0_g1_934_TPlot.pdf
TRINITY_DN39616_c0_g1:246	si_s92	TRINITY_DN39616_c0_g1	231	255	246	-34.90	-22.70	0.650429799426934	12	2-12,254-244;13-15,239-237;17-19,235-233	1-1,255-255[UP5];x-x,243-240[BULt];16-16,236-236[SIL];20-21,232-231[UP3]	..(((.(((....(((((((((((.&.)))))))))))----))).)))..	AGCCGCAGCUGCUGAAGAAGAAGAG&UUCUUCUUCUUC----GCUUCGGAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN39616_c0_g1_246_TPlot.pdf
TRINITY_DN39616_c0_g1:252	si_s86	TRINITY_DN39616_c0_g1	240	261	252	-32.90	-23.20	0.70516717325228	10	5-18,257-244;19-20,242-241	1-4,261-258[UP5];x-x,243-243[BULt];21-21,240-240[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	UGCUGAAGAAGAAGAGAGAGUU&UUUCCUUUCUUCUUCUUC-GCU	3	0.999999998540366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN39616_c0_g1_252_TPlot.pdf
TRINITY_DN39616_c0_g1:257	si_s81	TRINITY_DN39616_c0_g1	246	269	257	-28.90	-19.68	0.680968858131488	12	1-6,269-264;9-9,259-259;10-21,257-246	7-8,263-260[AILt];x-x,258-258[BULt]	((((((((((((.(....((((((&))))))--..)-))))))))))))	AGAAGAAGAGAGAGUUCUAGAAGA&UUUUCU--UUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN39616_c0_g1_257_TPlot.pdf
TRINITY_DN39616_c0_g1:259	si_s80	TRINITY_DN39616_c0_g1	247	270	259	-28.20	-19.08	0.676595744680851	11.5	1-7,270-264;10-10,259-259;11-21,257-247	8-9,263-260[AILt];x-x,258-258[BULt]	(((((((((((.(....(((((((&)))))))--..)-)))))))))))	GAAGAAGAGAGAGUUCUAGAAGAA&UUUUUCU--UUC-CUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN39616_c0_g1_259_TPlot.pdf
TRINITY_DN39616_c0_g1:489	si_a546	TRINITY_DN39616_c0_g1	478	503	489	-28.60	-19.48	0.681118881118881	18	1-5,503-499;9-21,490-478	6-8,498-491[AILt]	(((((((((((((........(((((&)))))-----...)))))))))))))	GAUGGAGAAGUAGUAAAACCAGAACC&GGUUC-----AAUCUAUUUCUUUAUC	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN39616_c0_g1_489_TPlot.pdf
TRINITY_DN3961_c0_g1:1573	si_s77	TRINITY_DN3961_c0_g1	1556	1582	1573	-25.50	-16.80	0.658823529411765	13.5	1-10,1582-1573;11-13,1567-1565;14-21,1563-1556	x-x,1572-1568[BULt];x-x,1564-1564[BULt]	((((((((.(((.....((((((((((&))))))))))-----)))-))))))))	GAAGAAAGUGAAAAAACAGAAAGAAGG&UUUUUUUUCU-----UUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3961_c0_g1_1573_TPlot.pdf
TRINITY_DN3961_c0_g1:1607	si_a73	TRINITY_DN3961_c0_g1	1596	1616	1607	-21.90	-14.70	0.671232876712329	9	1-15,1616-1602	16-21,1601-1596[UP3]	......(((((((((((((((&)))))))))))))))......	AGCGGAGAAGAAUAAUUUGGA&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999786684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN3961_c0_g1_1607_TPlot.pdf
TRINITY_DN3961_c0_g1:698	si_a434	TRINITY_DN3961_c0_g1	687	707	698	-36.40	-24.50	0.673076923076923	7	1-15,707-693;18-19,690-689	16-17,692-691[SIL];20-21,688-687[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	GGCUAUUAUCUAAUGGGUCCU&AGGAUCCGUUGGAUAUGAGAU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN3961_c0_g1_698_TPlot.pdf
TRINITY_DN3961_c0_g1:807	si_s68	TRINITY_DN3961_c0_g1	796	822	807	-23.10	-17.10	0.74025974025974	15	1-8,822-815;9-20,808-797	x-x,814-809[BULt];21-21,796-796[UP3]	.((((((((((((......((((((((&))))))))------)))))))))))).	UGAGAAAAGAGAUUAUGCAAGAAGUUG&CAACUUCU------AUUUUUUUUCUUU	3	0.999979807954259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN3961_c0_g1_807_TPlot.pdf
TRINITY_DN3961_c0_g1:808	si_s67	TRINITY_DN3961_c0_g1	797	823	808	-25.60	-21.00	0.8203125	14	1-9,823-815;10-21,808-797	x-x,814-809[BULt]	((((((((((((......(((((((((&)))))))))------))))))))))))	GAGAAAAGAGAUUAUGCAAGAAGUUGC&GCAACUUCU------AUUUUUUUUCUU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3961_c0_g1_808_TPlot.pdf
TRINITY_DN39622_c0_g1:368	si_s808	TRINITY_DN39622_c0_g1	357	381	368	-28.60	-19.70	0.688811188811189	13.5	2-8,380-374;9-19,369-359	1-1,381-381[UP5];x-x,373-370[BULt];20-21,358-357[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	UGGAGAAAAGGUAGAAAAUGGAGAA&AUCUUCGU----UACCUUUUCUUAA	2	0.999801676684109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN39622_c0_g1_368_TPlot.pdf
TRINITY_DN39637_c0_g1:294	si_a777	TRINITY_DN39637_c0_g1	283	306	294	-27.00	-17.80	0.659259259259259	12	1-7,306-300;8-15,296-289	x-x,299-297[BULt];16-21,288-283[UP3]	......((((((((...(((((((&)))))))---))))))))......	GAUUUGAGAAGAGUUCUUGAAUCA&UGAUUCA---ACUCUUCUAUUUUU	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN39637_c0_g1_294_TPlot.pdf
TRINITY_DN3963_c0_g1:1021	si_s889	TRINITY_DN3963_c0_g1	1010	1030	1021	-28.80	-21.40	0.743055555555555	17.5	10-21,1021-1010	1-9,1030-1022[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGAGAGCCAAACAACAA&AAAUAAAUAGGCUUUCUCUUC	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN3963_c0_g1_1021_TPlot.pdf
TRINITY_DN39664_c0_g1:492	si_a572	TRINITY_DN39664_c0_g1	481	502	492	-30.40	-20.30	0.667763157894737	7	1-9,502-494;10-13,492-489;16-21,486-481	x-x,493-493[BULt];14-15,488-487[SIL]	((((((..((((.(((((((((&)))))))))-))))..))))))	UGUUGCUUAUAUGGCGAUUCAU&GUGAAUCGU-AUGUUUGUAACA	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN39664_c0_g1_492_TPlot.pdf
TRINITY_DN39679_c0_g1:14	si_a887	TRINITY_DN39679_c0_g1	3	23	14	-22.90	-15.40	0.672489082969432	10	4-18,20-6	1-3,23-21[UP5];19-21,5-3[UP3]	...(((((((((((((((...&...)))))))))))))))...	AACUUGUUGCUAUAUUGGGUA&CAAUCAAUAUAGUAAUAAUAA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN39679_c0_g1_14_TPlot.pdf
TRINITY_DN3967_c0_g1:1294	si_s207	TRINITY_DN3967_c0_g1	1285	1303	1294	-33.00	-22.70	0.687878787878788	4.5	1-13,1303-1291;16-20,1290-1286	14-15,x-x[BULq];21-21,1285-1285[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	AUUCGA--GCAACUGGUAUAU&AUGUACCAGUUGUGUUCGAAA	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN3967_c0_g1_1294_TPlot.pdf
TRINITY_DN3967_c0_g1:1295	si_s206	TRINITY_DN3967_c0_g1	1286	1304	1295	-33.00	-23.70	0.718181818181818	3.5	1-14,1304-1291;17-21,1290-1286	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	UUCGA--GCAACUGGUAUAUU&AAUGUACCAGUUGUGUUCGAA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN3967_c0_g1_1295_TPlot.pdf
TRINITY_DN3967_c0_g1:1296	si_s205	TRINITY_DN3967_c0_g1	1287	1305	1296	-34.90	-23.20	0.664756446991404	4.5	2-15,1304-1291;18-21,1290-1287	1-1,1305-1305[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	UCGA--GCAACUGGUAUAUUA&GAAUGUACCAGUUGUGUUCGA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN3967_c0_g1_1296_TPlot.pdf
TRINITY_DN3967_c0_g1:1302	si_s199	TRINITY_DN3967_c0_g1	1291	1312	1302	-31.20	-21.40	0.685897435897436	9.5	3-7,1310-1306;8-21,1304-1291	1-2,1312-1311[UP5];x-x,1305-1305[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	GCAACUGGUAUAUUAUCAGGCA&AUUUUGG-AAUGUACCAGUUGU	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN3967_c0_g1_1302_TPlot.pdf
TRINITY_DN3967_c0_g1:1524	si_a405	TRINITY_DN3967_c0_g1	1513	1533	1524	-19.80	-12.90	0.651515151515151	9.5	1-12,1533-1522;14-18,1520-1516	13-13,1521-1521[SIL];19-21,1515-1513[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	ACUGGUGUUAACGGAGCAGUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3967_c0_g1_1524_TPlot.pdf
TRINITY_DN3967_c0_g1:1525	si_a404	TRINITY_DN3967_c0_g1	1514	1534	1525	-21.70	-14.20	0.654377880184332	9	1-13,1534-1522;15-19,1520-1516	14-14,1521-1521[SIL];20-21,1515-1514[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	CUGGUGUUAACGGAGCAGUUU&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3967_c0_g1_1525_TPlot.pdf
TRINITY_DN3967_c0_g1:1920	si_a459	TRINITY_DN3967_c0_g1	1909	1929	1920	-23.20	-16.60	0.71551724137931	8	1-15,1929-1915	16-21,1914-1909[UP3]	......(((((((((((((((&)))))))))))))))......	GAAAAAAUUAUGUAUAGCAAC&GUUGUUAUAUAUAAUAUGUAA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN3967_c0_g1_1920_TPlot.pdf
TRINITY_DN3967_c0_g1:1924	si_a455	TRINITY_DN3967_c0_g1	1913	1933	1924	-21.10	-18.20	0.862559241706161	7.5	3-19,1931-1915	1-2,1933-1932[UP5];20-21,1914-1913[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAUUAUGUAUAGCAACGAGA&AAUUGUUGUUAUAUAUAAUAU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN3967_c0_g1_1924_TPlot.pdf
TRINITY_DN3967_c0_g1:758	si_s508	TRINITY_DN3967_c0_g1	747	767	758	-22.80	-16.00	0.701754385964912	7.5	2-9,766-759;11-19,757-749	1-1,767-767[UP5];10-10,758-758[SIL];20-21,748-747[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CCUAGGAAUAUUGGGUUGUUA&AAACAAUUCUAUAUUCUUAAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN3967_c0_g1_758_TPlot.pdf
TRINITY_DN3967_c0_g1:994	si_a792	TRINITY_DN3967_c0_g1	983	1003	994	-27.60	-20.10	0.728260869565217	13.5	7-20,997-984	1-6,1003-998[UP5];21-21,983-983[UP3]	.((((((((((((((......&......)))))))))))))).	GGGAUUGGGAAAUGGUUUUUU&AUUUUUCUAUUUUCCAAUCCG	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN3967_c0_g1_994_TPlot.pdf
TRINITY_DN39691_c0_g1:282	si_a119	TRINITY_DN39691_c0_g1	270	291	282	-30.30	-20.30	0.66996699669967	8	1-12,291-280;14-17,277-274	13-13,279-278[AILt];18-21,273-270[UP3]	....((((..((((((((((((&))))))))))))-.))))....	AAGAGCUAGAAAAACAAGCUUG&CGAGCUUGUUUU-AUAGCAAUA	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN39691_c0_g1_282_TPlot.pdf
TRINITY_DN39691_c0_g1:339	si_a68	TRINITY_DN39691_c0_g1	328	351	339	-25.40	-17.60	0.692913385826772	14	1-9,351-343;13-21,336-328	10-12,342-337[AILt]	(((((((((......(((((((((&)))))))))---...)))))))))	UGAAGGACAUUGCGAUGAAAGAGG&CUUCUUUCA---AAUUGUUUUUCA	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN39691_c0_g1_339_TPlot.pdf
TRINITY_DN3969_c0_g1:1125	si_a17	TRINITY_DN3969_c0_g1	1114	1134	1125	-24.30	-16.20	0.666666666666667	9.5	3-7,1132-1128;9-20,1126-1115	1-2,1134-1133[UP5];8-8,1127-1127[SIL];21-21,1114-1114[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	CAUUGAAGAUGGAAAGGCUCA&AAAGCCUAUUUAUUUUUAGUU	3	0.999999871993792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN3969_c0_g1_1125_TPlot.pdf
TRINITY_DN3969_c0_g1:1283	si_s357	TRINITY_DN3969_c0_g1	1272	1292	1283	-28.70	-19.00	0.662020905923345	8.5	3-12,1290-1281;14-20,1279-1273	1-2,1292-1291[UP5];13-13,1280-1280[SIL];21-21,1272-1272[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	UUCGGUUUUGUUUGUUUCUCU&AAAGAAAUAGAUUGAACCGAU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN3969_c0_g1_1283_TPlot.pdf
TRINITY_DN3969_c0_g1:1284	si_s356	TRINITY_DN3969_c0_g1	1273	1293	1284	-28.90	-18.90	0.653979238754325	9	4-13,1290-1281;15-21,1279-1273	1-3,1293-1291[UP5];14-14,1280-1280[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	UCGGUUUUGUUUGUUUCUCUU&UAAAGAAAUAGAUUGAACCGA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s356_TRINITY_DN3969_c0_g1_1284_TPlot.pdf
TRINITY_DN3969_c0_g1:1717	si_a757	TRINITY_DN3969_c0_g1	1706	1725	1717	-33.10	-23.50	0.709969788519637	7.5	1-8,1725-1718;10-18,1717-1709	9-9,x-x[BULq];19-21,1708-1706[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	GGCCAGGAGCUC-AAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN3969_c0_g1_1717_TPlot.pdf
TRINITY_DN3969_c0_g1:1718	si_a756	TRINITY_DN3969_c0_g1	1707	1726	1718	-33.10	-23.70	0.716012084592145	7.5	2-9,1725-1718;11-19,1717-1709	1-1,1726-1726[UP5];10-10,x-x[BULq];20-21,1708-1707[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	GCCAGGAGCUC-AAGGAGGUA&AACCUCCUUUGGGUUUUUGAU	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN3969_c0_g1_1718_TPlot.pdf
TRINITY_DN3969_c0_g1:1719	si_a754	TRINITY_DN3969_c0_g1	1709	1728	1719	-34.60	-23.60	0.682080924855491	6	1-2,1728-1727;4-11,1725-1718;13-21,1717-1709	3-3,1726-1726[SIL];12-12,x-x[BULq]	(((((((((-((((((((.((&)).)))))))).)))))))))	CAGGAGCUC-AAGGAGGUACA&UGAACCUCCUUUGGGUUUUUG	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN3969_c0_g1_1719_TPlot.pdf
TRINITY_DN3969_c0_g1:2383	si_a123	TRINITY_DN3969_c0_g1	2372	2392	2383	-26.60	-17.70	0.665413533834586	10	1-5,2392-2388;8-16,2385-2377;18-19,2375-2374	6-7,2387-2386[SIL];17-17,2376-2376[SIL];20-21,2373-2372[UP3]	..((.(((((((((..(((((&)))))..))))))))).))..	AAGCCGUUGCUGUAUUGCAAG&CUUGUUUUAUAGCAAUAGUAA	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN3969_c0_g1_2383_TPlot.pdf
TRINITY_DN3969_c0_g1:2384	si_a122	TRINITY_DN3969_c0_g1	2373	2393	2384	-29.00	-21.40	0.737931034482759	9	1-6,2393-2388;9-17,2385-2377;19-20,2375-2374	7-8,2387-2386[SIL];18-18,2376-2376[SIL];21-21,2373-2373[UP3]	.((.(((((((((..((((((&))))))..))))))))).)).	AGCCGUUGCUGUAUUGCAAGC&GCUUGUUUUAUAGCAAUAGUA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN3969_c0_g1_2384_TPlot.pdf
TRINITY_DN3969_c0_g1:2385	si_a121	TRINITY_DN3969_c0_g1	2374	2394	2385	-29.30	-21.10	0.720136518771331	9	2-7,2393-2388;10-18,2385-2377;20-21,2375-2374	1-1,2394-2394[UP5];8-9,2387-2386[SIL];19-19,2376-2376[SIL]	((.(((((((((..((((((.&.))))))..))))))))).))	GCCGUUGCUGUAUUGCAAGCC&AGCUUGUUUUAUAGCAAUAGU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN3969_c0_g1_2385_TPlot.pdf
TRINITY_DN3969_c0_g1:2386	si_a120	TRINITY_DN3969_c0_g1	2375	2395	2386	-30.50	-20.20	0.662295081967213	10	1-1,2395-2395;3-8,2393-2388;11-19,2385-2377	2-2,2394-2394[SIL];9-10,2387-2386[SIL];20-21,2376-2375[UP3]	..(((((((((..((((((.(&).))))))..)))))))))..	CCGUUGCUGUAUUGCAAGCCC&GAGCUUGUUUUAUAGCAAUAG	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN3969_c0_g1_2386_TPlot.pdf
TRINITY_DN3969_c0_g1:2387	si_a119	TRINITY_DN3969_c0_g1	2376	2396	2387	-30.30	-20.30	0.66996699669967	10	2-2,2395-2395;4-9,2393-2388;12-20,2385-2377	1-1,2396-2396[UP5];3-3,2394-2394[SIL];10-11,2387-2386[SIL];21-21,2376-2376[UP3]	.(((((((((..((((((.(.&.).))))))..))))))))).	CGUUGCUGUAUUGCAAGCCCA&CGAGCUUGUUUUAUAGCAAUA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN3969_c0_g1_2387_TPlot.pdf
TRINITY_DN3969_c0_g1:2388	si_a118	TRINITY_DN3969_c0_g1	2377	2397	2388	-30.70	-20.10	0.654723127035831	11	3-3,2395-2395;5-10,2393-2388;13-21,2385-2377	1-2,2397-2396[UP5];4-4,2394-2394[SIL];11-12,2387-2386[SIL]	(((((((((..((((((.(..&..).))))))..)))))))))	GUUGCUGUAUUGCAAGCCCAU&ACGAGCUUGUUUUAUAGCAAU	2	0.99751887635167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN3969_c0_g1_2388_TPlot.pdf
TRINITY_DN3969_c0_g1:2690	si_a411	TRINITY_DN3969_c0_g1	2679	2699	2690	-17.90	-12.10	0.675977653631285	7	1-3,2699-2697;5-12,2695-2688;14-21,2686-2679	4-4,2696-2696[SIL];13-13,2687-2687[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	AUUUAUUUCGAUGUAAGGGAA&UUUGUUUAUAUUUAAAUAAAU	3	0.999999993337631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3969_c0_g1_2690_TPlot.pdf
TRINITY_DN3969_c0_g1:2692	si_a409	TRINITY_DN3969_c0_g1	2681	2701	2692	-19.50	-14.30	0.733333333333333	7.5	1-5,2701-2697;7-14,2695-2688;16-21,2686-2681	6-6,2696-2696[SIL];15-15,2687-2687[SIL]	((((((.((((((((.(((((&))))).)))))))).))))))	UUAUUUCGAUGUAAGGGAAGC&GUUUUGUUUAUAUUUAAAUAA	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3969_c0_g1_2692_TPlot.pdf
TRINITY_DN3969_c0_g1:2693	si_a408	TRINITY_DN3969_c0_g1	2682	2702	2693	-20.10	-14.20	0.706467661691542	7.5	1-6,2702-2697;8-15,2695-2688;17-21,2686-2682	7-7,2696-2696[SIL];16-16,2687-2687[SIL]	(((((.((((((((.((((((&)))))).)))))))).)))))	UAUUUCGAUGUAAGGGAAGCA&UGUUUUGUUUAUAUUUAAAUA	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN3969_c0_g1_2693_TPlot.pdf
TRINITY_DN3969_c0_g1:47	si_s440	TRINITY_DN3969_c0_g1	35	56	47	-21.60	-14.80	0.685185185185185	9	2-11,55-46;14-21,42-35	1-1,56-56[UP5];12-13,45-43[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	UUGUUAUAAAUUAGUGUGUGAG&AUUACAUAUUA-UAUAUAACAA	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN3969_c0_g1_47_TPlot.pdf
TRINITY_DN3969_c0_g1:902	si_s485	TRINITY_DN3969_c0_g1	891	910	902	-18.10	-12.50	0.69060773480663	7.5	1-8,910-903;10-19,902-893	9-9,x-x[BULq];20-21,892-891[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	UCUAUGUUUGAG-AAAUAUGG&CUAUAUUUAUUUAAAUAUAAA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN3969_c0_g1_902_TPlot.pdf
TRINITY_DN396_c0_g1:652	si_a374	TRINITY_DN396_c0_g1	641	661	652	-25.60	-20.10	0.78515625	6.5	1-8,661-654;10-18,652-644	9-9,653-653[SIL];19-21,643-641[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UUCUCGGAAUCACUUUUGGUC&GAUCAAAAAUGAUUUCGAAUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN396_c0_g1_652_TPlot.pdf
TRINITY_DN396_c0_g1:653	si_a373	TRINITY_DN396_c0_g1	642	662	653	-28.00	-20.10	0.717857142857143	6.5	2-9,661-654;11-19,652-644	1-1,662-662[UP5];10-10,653-653[SIL];20-21,643-642[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UCUCGGAAUCACUUUUGGUCA&GGAUCAAAAAUGAUUUCGAAU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN396_c0_g1_653_TPlot.pdf
TRINITY_DN396_c0_g1:654	si_a372	TRINITY_DN396_c0_g1	643	663	654	-29.40	-20.10	0.683673469387755	7.5	3-10,661-654;12-20,652-644	1-2,663-662[UP5];11-11,653-653[SIL];21-21,643-643[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	CUCGGAAUCACUUUUGGUCAU&CGGAUCAAAAAUGAUUUCGAA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN396_c0_g1_654_TPlot.pdf
TRINITY_DN396_c0_g1:753	si_a756	TRINITY_DN396_c0_g1	741	762	753	-33.10	-22.50	0.6797583081571	8.5	2-7,761-756;9-16,754-747;17-19,745-743	1-1,762-762[UP5];8-8,755-755[SIL];x-x,746-746[BULt];20-21,742-741[UP3]	..(((.((((((((.((((((.&.)))))).))))))))-)))..	GCCGGUGAACCCAGUGGAGGUG&AACCUCCUUUGGGUUU-UUGAU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN396_c0_g1_753_TPlot.pdf
TRINITY_DN39707_c0_g1:83	si_a338	TRINITY_DN39707_c0_g1	72	94	83	-31.10	-20.60	0.662379421221865	8.5	1-7,94-88;9-9,86-86;10-20,83-73	8-8,87-87[SIL];x-x,85-84[BULt];21-21,72-72[UP3]	.(((((((((((..(.(((((((&))))))).)--))))))))))).	AAAUAUUUUCGGUAGUCGAGGAG&UUCCUUGUC--CCGAAAAUAUUA	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a338_TRINITY_DN39707_c0_g1_83_TPlot.pdf
TRINITY_DN39708_c0_g1:35	si_a313	TRINITY_DN39708_c0_g1	24	47	35	-28.70	-18.94	0.65993031358885	12	1-4,47-44;6-8,42-40;10-21,35-24	5-5,43-43[SIL];9-9,39-36[AILt]	((((((((((((....(((.((((&)))).)))---.))))))))))))	AAAAUCAUGGAUCGGUGGUGCAAG&CUUGGAUU---UAUCCAUGAUUUU	4	0.999989419620488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN39708_c0_g1_35_TPlot.pdf
TRINITY_DN39709_c0_g1:2761	si_s628	TRINITY_DN39709_c0_g1	2750	2769	2761	-35.40	-23.60	0.666666666666667	8	1-2,2769-2768;5-15,2766-2756;17-21,2754-2750	3-4,2767-2767[AILq];16-16,2755-2755[SIL]	(((((.(((((((((((.-((&))..))))))))))).)))))	GGAUGGCUGCGAGAAGAG-GC&GCGAUCUUUUCGUAGGCGUUU	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN39709_c0_g1_2761_TPlot.pdf
TRINITY_DN39709_c0_g1:3132	si_s241	TRINITY_DN39709_c0_g1	3122	3141	3132	-35.20	-26.20	0.744318181818182	6.5	1-2,3141-3140;4-12,3138-3130;14-20,3129-3123	3-3,3139-3139[SIL];13-13,x-x[BULq];21-21,3122-3122[UP3]	.(((((((-(((((((((.((&)).))))))))).))))))).	CCGGGAGA-GCCUGUUGGAUC&GAAUCAAUAGGCAUUUCCCGA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s241_TRINITY_DN39709_c0_g1_3132_TPlot.pdf
TRINITY_DN3971_c0_g1:1860	si_a71	TRINITY_DN3971_c0_g1	1849	1869	1860	-23.30	-16.30	0.699570815450644	8	1-8,1869-1862;10-18,1860-1852	9-9,1861-1861[SIL];19-21,1851-1849[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GAUUGAAGGACACUUUGGAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3971_c0_g1_1860_TPlot.pdf
TRINITY_DN3971_c0_g1:1861	si_a70	TRINITY_DN3971_c0_g1	1850	1870	1861	-23.90	-16.30	0.682008368200837	8	2-9,1869-1862;11-19,1860-1852	1-1,1870-1870[UP5];10-10,1861-1861[SIL];20-21,1851-1850[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AUUGAAGGACACUUUGGAGGC&UCUUUCAAAUUGUUUUUCAUU	2	0.99997154569721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3971_c0_g1_1861_TPlot.pdf
TRINITY_DN3971_c0_g1:2303	si_s887	TRINITY_DN3971_c0_g1	2291	2312	2303	-26.80	-17.80	0.664179104477612	10	5-10,2308-2303;11-15,2301-2297;17-21,2295-2291	1-4,2312-2309[UP5];x-x,2302-2302[BULt];16-16,2296-2296[SIL]	(((((.(((((.((((((....&....))))))-))))).)))))	AGAGAUAGCCUAAUUUAUAUUU&AAAAAUAAAU-AGGCUUUCUCU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN3971_c0_g1_2303_TPlot.pdf
TRINITY_DN3971_c0_g1:2618	si_a230	TRINITY_DN3971_c0_g1	2607	2631	2618	-26.90	-17.50	0.650557620817844	15.5	3-8,2629-2624;9-20,2619-2608	1-2,2631-2630[UP5];x-x,2623-2620[BULt];21-21,2607-2607[UP3]	.((((((((((((....((((((..&..))))))----)))))))))))).	CUGAAUUGAUUGUUACUGGAGACGA&AUGUUUCU----AUAAUCAAUUCGA	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN3971_c0_g1_2618_TPlot.pdf
TRINITY_DN3971_c0_g1:395	si_a19	TRINITY_DN3971_c0_g1	382	404	395	-27.00	-18.00	0.666666666666667	6.5	2-9,403-396;11-15,394-390;16-21,387-382	1-1,404-404[UP5];10-10,395-395[SIL];x-x,389-388[BULt]	((((((..(((((.((((((((.&.)))))))).)))))--))))))	GGAACUUGAAAAAAAAGUAGGCG&AGCCUAUUUAUUUUU--AGUUCU	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN3971_c0_g1_395_TPlot.pdf
TRINITY_DN39727_c0_g1:797	si_a624	TRINITY_DN39727_c0_g1	787	806	797	-32.30	-21.00	0.65015479876161	5	1-6,806-801;8-13,799-794;15-21,793-787	7-7,800-800[SIL];14-14,x-x[BULq]	(((((((-((((((.((((((&)))))).)))))).)))))))	GAAUUGG-GUAAUAGGCCUAG&CUAGGCGUAUUAUGUCGAUUU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN39727_c0_g1_797_TPlot.pdf
TRINITY_DN39733_c0_g1:291	si_s196	TRINITY_DN39733_c0_g1	280	300	291	-29.30	-20.20	0.689419795221843	13	7-9,294-292;11-21,290-280	1-6,300-295[UP5];10-10,291-291[SIL]	(((((((((((.(((......&......))).)))))))))))	ACUGGUACAUUGCAACAGCAA&AUUAUUUUGGAAUGUACCAGU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN39733_c0_g1_291_TPlot.pdf
TRINITY_DN39748_c0_g1:624	si_s181	TRINITY_DN39748_c0_g1	613	636	624	-34.60	-22.50	0.65028901734104	11	1-5,636-632;6-8,630-628;9-17,625-617	x-x,631-631[BULt];x-x,627-626[BULt];18-21,616-613[UP3]	....(((((((((..(((.(((((&)))))-)))--)))))))))....	CGCCAUCGUUACUGGCGGCGCGUC&GAUGC-CCG--AGUAACGAUUAUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN39748_c0_g1_624_TPlot.pdf
TRINITY_DN3974_c0_g1:480	si_a411	TRINITY_DN3974_c0_g1	469	489	480	-17.90	-11.70	0.653631284916201	10	2-14,488-476	1-1,489-489[UP5];15-21,475-469[UP3]	.......(((((((((((((.&.))))))))))))).......	AAAACCAUAGAUGUAAACAAG&UUUGUUUAUAUUUAAAUAAAU	4	0.99999999999921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN3974_c0_g1_480_TPlot.pdf
TRINITY_DN3974_c0_g1:481	si_a410	TRINITY_DN3974_c0_g1	470	490	481	-17.80	-13.20	0.741573033707865	8.5	1-15,490-476	16-21,475-470[UP3]	......(((((((((((((((&)))))))))))))))......	AAACCAUAGAUGUAAACAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN3974_c0_g1_481_TPlot.pdf
TRINITY_DN3974_c0_g1:482	si_a409	TRINITY_DN3974_c0_g1	471	491	482	-19.50	-14.50	0.743589743589744	8	1-16,491-476	17-21,475-471[UP3]	.....((((((((((((((((&)))))))))))))))).....	AACCAUAGAUGUAAACAAGAU&GUUUUGUUUAUAUUUAAAUAA	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN3974_c0_g1_482_TPlot.pdf
TRINITY_DN3974_c0_g1:483	si_a408	TRINITY_DN3974_c0_g1	472	492	483	-20.10	-14.50	0.721393034825871	8.5	2-17,491-476	1-1,492-492[UP5];18-21,475-472[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACCAUAGAUGUAAACAAGAUU&UGUUUUGUUUAUAUUUAAAUA	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN3974_c0_g1_483_TPlot.pdf
TRINITY_DN3974_c0_g1:484	si_a407	TRINITY_DN3974_c0_g1	473	493	484	-19.80	-14.50	0.732323232323232	9	3-18,491-476	1-2,493-492[UP5];19-21,475-473[UP3]	...((((((((((((((((..&..))))))))))))))))...	CCAUAGAUGUAAACAAGAUUU&UUGUUUUGUUUAUAUUUAAAU	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN3974_c0_g1_484_TPlot.pdf
TRINITY_DN3974_c0_g1:485	si_a406	TRINITY_DN3974_c0_g1	474	494	485	-19.80	-14.50	0.732323232323232	10	4-19,491-476	1-3,494-492[UP5];20-21,475-474[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAUAGAUGUAAACAAGAUUUA&AUUGUUUUGUUUAUAUUUAAA	3	0.999998487030107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN3974_c0_g1_485_TPlot.pdf
TRINITY_DN3974_c0_g1:486	si_a405	TRINITY_DN3974_c0_g1	475	495	486	-19.80	-14.50	0.732323232323232	11	5-20,491-476	1-4,495-492[UP5];21-21,475-475[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUAGAUGUAAACAAGAUUUAA&AAUUGUUUUGUUUAUAUUUAA	3	0.999999694312056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN3974_c0_g1_486_TPlot.pdf
TRINITY_DN3974_c0_g1:487	si_a404	TRINITY_DN3974_c0_g1	476	496	487	-21.70	-14.30	0.658986175115207	12	6-21,491-476	1-5,496-492[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAGAUGUAAACAAGAUUUAAG&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN3974_c0_g1_487_TPlot.pdf
TRINITY_DN39751_c0_g1:322	si_s635	TRINITY_DN39751_c0_g1	311	331	322	-39.80	-34.40	0.864321608040201	4.5	1-13,331-319;16-21,316-311	14-15,318-317[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	CGAGGGGCGGCGCCUGCGAAA&UUUCGUAGGCGUUUGCCCUCG	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN39751_c0_g1_322_TPlot.pdf
TRINITY_DN3975_c0_g1:4536	si_s71	TRINITY_DN3975_c0_g1	4525	4549	4536	-25.70	-16.88	0.656809338521401	15.5	2-9,4548-4541;11-21,4535-4525	1-1,4549-4549[UP5];10-10,4540-4536[AILt]	(((((((((((.....((((((((.&.))))))))----.)))))))))))	GGGAAAGAAGAUCAUCGAAUGGAGC&CUUCUAUUU----UUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN3975_c0_g1_4536_TPlot.pdf
TRINITY_DN3975_c0_g1:932	si_a374	TRINITY_DN3975_c0_g1	921	941	932	-25.60	-19.00	0.7421875	7	2-17,940-925	1-1,941-941[UP5];18-21,924-921[UP3]	....((((((((((((((((.&.))))))))))))))))....	UCACCGGGAUCAUUUUUGGUA&GAUCAAAAAUGAUUUCGAAUU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN3975_c0_g1_932_TPlot.pdf
TRINITY_DN3975_c0_g1:933	si_a373	TRINITY_DN3975_c0_g1	922	945	933	-28.00	-19.70	0.703571428571429	11	1-4,945-942;5-18,938-925	x-x,941-939[BULt];19-21,924-922[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	CACCGGGAUCAUUUUUGGUAGUCC&GGAU---CAAAAAUGAUUUCGAAU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN3975_c0_g1_933_TPlot.pdf
TRINITY_DN3975_c0_g1:934	si_a372	TRINITY_DN3975_c0_g1	923	947	934	-29.40	-20.70	0.704081632653061	12	1-3,947-945;4-19,940-925	x-x,944-941[BULt];20-21,924-923[UP3]	..((((((((((((((((....(((&)))----))))))))))))))))..	ACCGGGAUCAUUUUUGGUAGUCCCG&CGG----AUCAAAAAUGAUUUCGAA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN3975_c0_g1_934_TPlot.pdf
TRINITY_DN3975_c0_g1:935	si_a371	TRINITY_DN3975_c0_g1	924	948	935	-30.30	-20.70	0.683168316831683	12	2-4,947-945;5-20,940-925	1-1,948-948[UP5];x-x,944-941[BULt];21-21,924-924[UP3]	.((((((((((((((((....(((.&.)))----)))))))))))))))).	CCGGGAUCAUUUUUGGUAGUCCCGU&UCGG----AUCAAAAAUGAUUUCGA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN3975_c0_g1_935_TPlot.pdf
TRINITY_DN3975_c0_g1:936	si_a370	TRINITY_DN3975_c0_g1	925	949	936	-29.50	-19.90	0.674576271186441	13	3-5,947-945;6-21,940-925	1-2,949-948[UP5];x-x,944-941[BULt]	((((((((((((((((....(((..&..)))----))))))))))))))))	CGGGAUCAUUUUUGGUAGUCCCGUA&AUCGG----AUCAAAAAUGAUUUCG	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN3975_c0_g1_936_TPlot.pdf
TRINITY_DN39763_c0_g1:305	si_s4	TRINITY_DN39763_c0_g1	295	314	305	-21.60	-17.40	0.805555555555555	3	1-16,314-299;18-21,298-295	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	UAGU-GUAAUAAGUAAUAUGG&UUAUAUUACUUAUUAUUACUA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN39763_c0_g1_305_TPlot.pdf
TRINITY_DN39763_c0_g1:306	si_s3	TRINITY_DN39763_c0_g1	296	315	306	-21.20	-16.40	0.773584905660377	4	1-17,315-299;19-21,298-296	18-18,x-x[BULq]	(((-(((((((((((((((((&))))))))))))))))).)))	AGU-GUAAUAAGUAAUAUGGG&UUUAUAUUACUUAUUAUUACU	0	0.0310271760915797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN39763_c0_g1_306_TPlot.pdf
TRINITY_DN3976_c0_g1:1047	si_a645	TRINITY_DN3976_c0_g1	1035	1056	1047	-29.40	-20.00	0.680272108843537	8	1-10,1056-1047;13-17,1044-1040;18-20,1038-1036	11-12,1046-1045[SIL];x-x,1039-1039[BULt];21-21,1035-1035[UP3]	.(((.(((((..((((((((((&))))))))))..)))))-))).	AUCCACGAUAAUUUACUCAGGA&UUUUGAGUAAUAUAUCG-GGAA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN3976_c0_g1_1047_TPlot.pdf
TRINITY_DN3976_c0_g1:1050	si_a642	TRINITY_DN3976_c0_g1	1039	1059	1050	-25.90	-16.90	0.652509652509653	8	3-13,1057-1047;16-20,1044-1040	1-2,1059-1058[UP5];14-15,1046-1045[SIL];21-21,1039-1039[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	ACGAUAAUUUACUCAGGAACU&UUUUUUUGAGUAAUAUAUCGG	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN3976_c0_g1_1050_TPlot.pdf
TRINITY_DN39773_c0_g1:69	si_s41	TRINITY_DN39773_c0_g1	56	78	69	-25.00	-18.10	0.724	6.5	2-14,77-65;15-20,62-57	1-1,78-78[UP5];x-x,64-63[BULt];21-21,56-56[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	GGAAGUCAUCAAUUGUUAAGGAA&AUCUUUAAUAAUUG--GAUUUCA	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN39773_c0_g1_69_TPlot.pdf
TRINITY_DN39776_c0_g1:1875	si_a303	TRINITY_DN39776_c0_g1	1865	1884	1875	-28.40	-21.60	0.76056338028169	9	5-12,1880-1873;14-21,1872-1865	1-4,1884-1881[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	AUGAGUCC-AGCGAAUCGGAA&AAAAGAUUCGCUUGGAUUUAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN39776_c0_g1_1875_TPlot.pdf
TRINITY_DN3977_c0_g2:1529	si_s827	TRINITY_DN3977_c0_g2	1518	1538	1529	-21.90	-15.30	0.698630136986301	5	1-10,1538-1529;12-15,1527-1524;17-21,1522-1518	11-11,1528-1528[SIL];16-16,1523-1523[SIL]	(((((.((((.((((((((((&)))))))))).)))).)))))	UUCGGUUUGUAUUUCAUUGUU&AAUAAUGAAAAACAAUUUGAA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN3977_c0_g2_1529_TPlot.pdf
TRINITY_DN3977_c0_g2:1530	si_s826	TRINITY_DN3977_c0_g2	1519	1539	1530	-22.20	-15.70	0.707207207207207	5	1-11,1539-1529;13-16,1527-1524;18-21,1522-1519	12-12,1528-1528[SIL];17-17,1523-1523[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	UCGGUUUGUAUUUCAUUGUUA&UAAUAAUGAAAAACAAUUUGA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s826_TRINITY_DN3977_c0_g2_1530_TPlot.pdf
TRINITY_DN3977_c1_g1:3046	si_s81	TRINITY_DN3977_c1_g1	3033	3055	3046	-28.90	-20.70	0.716262975778547	7.5	2-12,3054-3044;13-16,3042-3039;17-21,3037-3033	1-1,3055-3055[UP5];x-x,3043-3043[BULt];x-x,3038-3038[BULt]	(((((.((((.(((((((((((.&.)))))))))))-))))-)))))	AGAAGCGAGACAGGGAGAGAAGC&UUUUCUUUCCUU-UCUU-CUUCU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN3977_c1_g1_3046_TPlot.pdf
TRINITY_DN3977_c1_g1:5205	si_s77	TRINITY_DN3977_c1_g1	5196	5214	5205	-25.50	-16.60	0.650980392156863	4.5	2-11,5213-5204;14-21,5203-5196	1-1,5214-5214[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	GAAGAGAG--AAGAAAAAAAU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN3977_c1_g1_5205_TPlot.pdf
TRINITY_DN3977_c1_g1:6040	si_a15	TRINITY_DN3977_c1_g1	6028	6049	6040	-26.20	-18.20	0.694656488549618	5	2-10,6048-6040;11-21,6038-6028	1-1,6049-6049[UP5];x-x,6039-6039[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	CUAAAAAUAAACUAGGUUUUUC&AGAAAGCCUA-UUUAUUUUUAG	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN3977_c1_g1_6040_TPlot.pdf
TRINITY_DN3978_c0_g1:3357	si_s76	TRINITY_DN3978_c0_g1	3345	3366	3357	-23.60	-15.70	0.665254237288135	10	4-14,3363-3353;15-19,3351-3347	1-3,3366-3364[UP5];x-x,3352-3352[BULt];20-21,3346-3345[UP3]	..(((((.(((((((((((...&...)))))))))))-)))))..	GUGGAGGUGAAAGAAGAAAUAG&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN3978_c0_g1_3357_TPlot.pdf
TRINITY_DN3978_c0_g1:3412	si_a547	TRINITY_DN3978_c0_g1	3401	3419	3412	-26.90	-20.80	0.773234200743494	6.5	1-4,3419-3416;7-21,3415-3401	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	AGAUGAAGAAAUGGA--GGAC&GUUCAAUCUAUUUCUUUAUCU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN3978_c0_g1_3412_TPlot.pdf
TRINITY_DN3978_c0_g1:3487	si_a785	TRINITY_DN3978_c0_g1	3476	3497	3487	-25.90	-17.10	0.66023166023166	8.5	2-8,3496-3490;10-20,3487-3477	1-1,3497-3497[UP5];9-9,3489-3488[AILt];21-21,3476-3476[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	AGAAAUAGAAGAUUUGGAAGAU&CUCUUCUA-UUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN3978_c0_g1_3487_TPlot.pdf
TRINITY_DN3978_c0_g1:3488	si_a784	TRINITY_DN3978_c0_g1	3477	3498	3488	-24.70	-16.90	0.684210526315789	9.5	3-9,3496-3490;11-21,3487-3477	1-2,3498-3497[UP5];10-10,3489-3488[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GAAAUAGAAGAUUUGGAAGAUC&ACUCUUCUA-UUUUUCUAUUUU	2	0.99999997609241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN3978_c0_g1_3488_TPlot.pdf
TRINITY_DN3978_c0_g1:3687	si_a786	TRINITY_DN3978_c0_g1	3676	3696	3687	-26.60	-18.20	0.684210526315789	5	1-12,3696-3685;14-20,3683-3677	13-13,3684-3684[SIL];21-21,3676-3676[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CGAAGAUGAAGAAAUGGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999999699057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN3978_c0_g1_3687_TPlot.pdf
TRINITY_DN3978_c0_g1:3833	si_s91	TRINITY_DN3978_c0_g1	3824	3842	3833	-34.70	-22.90	0.659942363112392	4.5	2-14,3841-3829;17-21,3828-3824	1-1,3842-3842[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	UCUGA--CGAAGAAGAGGAAC&UUUCUUCUUCUUCGCUUCGGA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN3978_c0_g1_3833_TPlot.pdf
TRINITY_DN3978_c0_g1:3847	si_a143	TRINITY_DN3978_c0_g1	3835	3856	3847	-25.10	-16.60	0.661354581673307	8	2-13,3855-3844;14-18,3842-3838	1-1,3856-3856[UP5];x-x,3843-3843[BULt];19-21,3837-3835[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	AGAGGAACAAACAGCGGUUAAA&AUUAAUCGUUGUU-GUUUUAAG	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN3978_c0_g1_3847_TPlot.pdf
TRINITY_DN3978_c0_g1:3976	si_a70	TRINITY_DN3978_c0_g1	3965	3985	3976	-23.90	-16.20	0.677824267782427	5.5	1-3,3985-3983;5-15,3981-3971;18-21,3968-3965	4-4,3982-3982[SIL];16-17,3970-3969[SIL]	((((..(((((((((((.(((&))).)))))))))))..))))	AGUGCUGAGCAAUUUGAUAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999987485930559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN3978_c0_g1_3976_TPlot.pdf
TRINITY_DN3978_c0_g1:3977	si_a69	TRINITY_DN3978_c0_g1	3966	3986	3977	-24.00	-15.60	0.65	6.5	2-4,3985-3983;6-16,3981-3971;19-21,3968-3966	1-1,3986-3986[UP5];5-5,3982-3982[SIL];17-18,3970-3969[SIL]	(((..(((((((((((.(((.&.))).)))))))))))..)))	GUGCUGAGCAAUUUGAUAGAU&UUCUUUCAAAUUGUUUUUCAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN3978_c0_g1_3977_TPlot.pdf
TRINITY_DN3978_c0_g1:50	si_s79	TRINITY_DN3978_c0_g1	40	58	50	-26.20	-17.30	0.66030534351145	5.5	1-9,58-50;12-21,49-40	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	AAGAAGAAAG--AAGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN3978_c0_g1_50_TPlot.pdf
TRINITY_DN39791_c0_g1:1251	si_s733	TRINITY_DN39791_c0_g1	1238	1260	1251	-34.00	-22.46	0.660588235294118	8.5	2-14,1259-1247;18-21,1241-1238	1-1,1260-1260[UP5];15-17,1246-1242[AILt]	((((.....(((((((((((((.&.)))))))))))))--...))))	GAUCACCACUCGCCUGUCUAGAA&AUCUAGACGGGUGA--AUAGAUU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s733_TRINITY_DN39791_c0_g1_1251_TPlot.pdf
TRINITY_DN39791_c0_g1:1253	si_s731	TRINITY_DN39791_c0_g1	1242	1262	1253	-34.30	-22.30	0.650145772594752	11.5	4-16,1259-1247	1-3,1262-1260[UP5];17-21,1246-1242[UP3]	.....(((((((((((((...&...))))))))))))).....	ACCACUCGCCUGUCUAGAAGA&UUAUCUAGACGGGUGAAUAGA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s731_TRINITY_DN39791_c0_g1_1253_TPlot.pdf
TRINITY_DN39791_c0_g1:1256	si_s728	TRINITY_DN39791_c0_g1	1245	1265	1256	-31.90	-22.30	0.699059561128527	14	7-19,1259-1247	1-6,1265-1260[UP5];20-21,1246-1245[UP3]	..(((((((((((((......&......)))))))))))))..	ACUCGCCUGUCUAGAAGACUU&AUAUUAUCUAGACGGGUGAAU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN39791_c0_g1_1256_TPlot.pdf
TRINITY_DN39791_c0_g1:1506	si_a801	TRINITY_DN39791_c0_g1	1494	1515	1506	-34.60	-22.80	0.658959537572254	8.5	2-7,1514-1509;10-12,1506-1504;13-21,1502-1494	1-1,1515-1515[UP5];8-9,1508-1507[SIL];x-x,1503-1503[BULt]	(((((((((.(((..((((((.&.))))))..)))-)))))))))	UCUUCGUUUGCGGCAUGGAGAG&UUUUCCAAUCCG-AAGCGAAGA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN39791_c0_g1_1506_TPlot.pdf
TRINITY_DN39791_c0_g1:1518	si_s73	TRINITY_DN39791_c0_g1	1507	1526	1518	-24.00	-16.20	0.675	10	1-3,1526-1524;5-18,1523-1510	4-4,x-x[BULq];19-21,1509-1507[UP3]	...((((((((((((((-(((&))).))))))))))))))...	CAUGGAGAGAGAGAAGG-AGG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN39791_c0_g1_1518_TPlot.pdf
TRINITY_DN39791_c0_g1:1519	si_s72	TRINITY_DN39791_c0_g1	1508	1527	1519	-24.10	-16.30	0.676348547717842	10.5	2-4,1526-1524;6-19,1523-1510	1-1,1527-1527[UP5];5-5,x-x[BULq];20-21,1509-1508[UP3]	..((((((((((((((-(((.&.))).))))))))))))))..	AUGGAGAGAGAGAAGG-AGGC&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN39791_c0_g1_1519_TPlot.pdf
TRINITY_DN39791_c0_g1:1520	si_s71	TRINITY_DN39791_c0_g1	1509	1526	1520	-25.70	-17.40	0.67704280155642	11	1-5,1526-1522;9-20,1521-1510	6-8,x-x[BULq];21-21,1509-1509[UP3]	.((((((((((((---(((((&)))))...)))))))))))).	UGGAGAGAGAGAA---GGAGG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN39791_c0_g1_1520_TPlot.pdf
TRINITY_DN39791_c0_g1:1521	si_s70	TRINITY_DN39791_c0_g1	1510	1527	1521	-25.80	-17.60	0.682170542635659	11	2-6,1526-1522;10-21,1521-1510	1-1,1527-1527[UP5];7-9,x-x[BULq]	((((((((((((---(((((.&.)))))...))))))))))))	GGAGAGAGAGAA---GGAGGC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN39791_c0_g1_1521_TPlot.pdf
TRINITY_DN39791_c0_g1:1522	si_s77	TRINITY_DN39791_c0_g1	1510	1531	1522	-25.50	-17.20	0.674509803921569	14	6-13,1526-1519;14-21,1517-1510	1-5,1531-1527[UP5];x-x,1518-1518[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	GGAGAGAGAGAAGGAGGCGGAC&UUUUUUUUCUUUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN39791_c0_g1_1522_TPlot.pdf
TRINITY_DN39791_c0_g1:1533	si_s91	TRINITY_DN39791_c0_g1	1520	1542	1533	-34.70	-23.00	0.662824207492795	10.5	1-10,1542-1533;11-18,1530-1523	x-x,1532-1531[BULt];19-21,1522-1520[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	AAGGAGGCGGACUGAGGAAGAGA&UUUCUUCUUC--UUCGCUUCGGA	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN39791_c0_g1_1533_TPlot.pdf
TRINITY_DN39791_c0_g1:1535	si_s89	TRINITY_DN39791_c0_g1	1522	1544	1535	-35.30	-26.30	0.745042492917847	9	2-12,1543-1533;13-20,1530-1523	1-1,1544-1544[UP5];x-x,1532-1531[BULt];21-21,1522-1522[UP3]	.((((((((..(((((((((((.&.)))))))))))--)))))))).	GGAGGCGGACUGAGGAAGAGAGA&CCUUUCUUCUUC--UUCGCUUCG	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN39791_c0_g1_1535_TPlot.pdf
TRINITY_DN39791_c0_g1:1538	si_s86	TRINITY_DN39791_c0_g1	1525	1547	1538	-32.90	-21.70	0.659574468085106	11.5	5-15,1543-1533;16-21,1530-1525	1-4,1547-1544[UP5];x-x,1532-1531[BULt]	((((((..(((((((((((....&....)))))))))))--))))))	GGCGGACUGAGGAAGAGAGACGU&UUUCCUUUCUUCUUC--UUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN39791_c0_g1_1538_TPlot.pdf
TRINITY_DN39791_c0_g1:1636	si_s707	TRINITY_DN39791_c0_g1	1627	1644	1636	-30.90	-20.20	0.653721682847896	9	2-9,1643-1636;13-21,1635-1627	1-1,1644-1644[UP5];10-12,x-x[BULq]	(((((((((---((((((((.&.))))))))...)))))))))	CUUUCCCUG---ACUGAUAGC&UUUAUUAGUGAACAGGGAAAG	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s707_TRINITY_DN39791_c0_g1_1636_TPlot.pdf
TRINITY_DN39791_c0_g1:1754	si_s809	TRINITY_DN39791_c0_g1	1743	1766	1754	-28.50	-18.92	0.663859649122807	15	1-6,1766-1761;9-19,1755-1745	7-8,1760-1756[AILt];20-21,1744-1743[UP3]	..(((((((((((.....((((((&))))))---..)))))))))))..	AAUGAGAGAGGGUCAUUUCGGAGA&UCUUCG---UUACCUUUUCUUAAU	4	0.999999998893116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN39791_c0_g1_1754_TPlot.pdf
TRINITY_DN39791_c0_g1:1757	si_s806	TRINITY_DN39791_c0_g1	1746	1769	1757	-28.60	-18.62	0.651048951048951	15.5	3-9,1767-1761;12-21,1755-1746	1-2,1769-1768[UP5];10-11,1760-1756[AILt]	((((((((((.....(((((((..&..)))))))---..))))))))))	GAGAGAGGGUCAUUUCGGAGAUCG&UUAUCUUCG---UUACCUUUUCUU	2	0.999999999011946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN39791_c0_g1_1757_TPlot.pdf
TRINITY_DN39793_c0_g1:613	si_a637	TRINITY_DN39793_c0_g1	600	622	613	-25.80	-17.20	0.666666666666667	12.5	1-12,622-611;13-16,608-605	x-x,610-609[BULt];17-21,604-600[UP3]	.....((((..((((((((((((&))))))))))))--)))).....	AAGAAGCUCUAAGAGGAAUCGAC&GUCGAUUUUUUU--GAGUAAUAU	4	0.999999994461891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN39793_c0_g1_613_TPlot.pdf
TRINITY_DN397_c0_g1:4324	si_a651	TRINITY_DN397_c0_g1	4310	4333	4324	-33.30	-21.70	0.651651651651652	8.5	3-15,4331-4319;16-20,4315-4311	1-2,4333-4332[UP5];x-x,4318-4316[BULt];21-21,4310-4310[UP3]	.(((((...(((((((((((((..&..)))))))))))))---))))).	UGGCGUUAUUUCCUGAUAUAUUUA&GUAAUAUAUCGGGAA---AUGCCU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a651_TRINITY_DN397_c0_g1_4324_TPlot.pdf
TRINITY_DN397_c0_g1:4951	si_s79	TRINITY_DN397_c0_g1	4940	4960	4951	-26.20	-17.60	0.67175572519084	13	6-17,4955-4944;19-21,4942-4940	1-5,4960-4956[UP5];18-18,4943-4943[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GGGUGGGAAGGGAAGACUCUC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN397_c0_g1_4951_TPlot.pdf
TRINITY_DN397_c0_g1:5379	si_s747	TRINITY_DN397_c0_g1	5369	5388	5379	-28.70	-19.70	0.686411149825784	6.5	2-16,5387-5373;18-18,5372-5372;21-21,5369-5369	1-1,5388-5388[UP5];17-17,x-x[BULq];19-20,5371-5370[SIL]	(..(-(((((((((((((((.&.))))))))))))))).)..)	GGGG-UUUGGGGUCAAUCUGA&AUAGAUUGACCUUAAAACAAC	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s747_TRINITY_DN397_c0_g1_5379_TPlot.pdf
TRINITY_DN397_c0_g1:5381	si_s745	TRINITY_DN397_c0_g1	5370	5390	5381	-28.90	-19.10	0.660899653979239	10	4-17,5387-5374;20-20,5371-5371	1-3,5390-5388[UP5];18-19,5373-5372[SIL];21-21,5370-5370[UP3]	.(..((((((((((((((...&...))))))))))))))..).	GGGUUUGGGGUCAAUCUGAAA&GAAUAGAUUGACCUUAAAACA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s745_TRINITY_DN397_c0_g1_5381_TPlot.pdf
TRINITY_DN397_c0_g1:5382	si_s744	TRINITY_DN397_c0_g1	5371	5391	5382	-28.90	-18.90	0.653979238754325	11	5-19,5387-5373	1-4,5391-5388[UP5];20-21,5372-5371[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGUUUGGGGUCAAUCUGAAAC&UGAAUAGAUUGACCUUAAAAC	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s744_TRINITY_DN397_c0_g1_5382_TPlot.pdf
TRINITY_DN397_c0_g1:5383	si_s743	TRINITY_DN397_c0_g1	5372	5393	5383	-29.00	-20.90	0.720689655172414	9	1-3,5393-5391;6-20,5387-5373	4-5,5390-5388[AILt];21-21,5372-5372[UP3]	.(((((((((((((((...(((&)))-..))))))))))))))).	GUUUGGGGUCAAUCUGAAACAC&GUG-AAUAGAUUGACCUUAAAA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN397_c0_g1_5383_TPlot.pdf
TRINITY_DN397_c0_g1:5384	si_s742	TRINITY_DN397_c0_g1	5373	5394	5384	-31.40	-24.60	0.78343949044586	8	1-4,5394-5391;7-21,5387-5373	5-6,5390-5388[AILt]	(((((((((((((((...((((&))))-..)))))))))))))))	UUUGGGGUCAAUCUGAAACACC&GGUG-AAUAGAUUGACCUUAAA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN397_c0_g1_5384_TPlot.pdf
TRINITY_DN397_c0_g1:5385	si_s741	TRINITY_DN397_c0_g1	5374	5395	5385	-33.80	-24.00	0.710059171597633	9	2-5,5394-5391;8-21,5387-5374	1-1,5395-5395[UP5];6-7,5390-5388[AILt]	((((((((((((((...((((.&.))))-..))))))))))))))	UUGGGGUCAAUCUGAAACACCG&GGGUG-AAUAGAUUGACCUUAA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN397_c0_g1_5385_TPlot.pdf
TRINITY_DN397_c0_g1:5386	si_s740	TRINITY_DN397_c0_g1	5375	5396	5386	-35.20	-23.10	0.65625	11	3-6,5394-5391;9-21,5387-5375	1-2,5396-5395[UP5];7-8,5390-5388[AILt]	(((((((((((((...((((..&..))))-..)))))))))))))	UGGGGUCAAUCUGAAACACCGA&CGGGUG-AAUAGAUUGACCUUA	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN397_c0_g1_5386_TPlot.pdf
TRINITY_DN397_c0_g1:5388	si_a762	TRINITY_DN397_c0_g1	5377	5398	5388	-29.70	-19.80	0.666666666666667	9	2-6,5397-5393;7-11,5391-5387;13-21,5385-5377	1-1,5398-5398[UP5];x-x,5392-5392[BULt];12-12,5386-5386[SIL]	(((((((((.(((((.(((((.&.)))))-))))).)))))))))	GGGUCAAUCUGAAACACCGAGU&CUUUGG-GUUUUUGAUUGAUUC	3	0.999999874559078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN397_c0_g1_5388_TPlot.pdf
TRINITY_DN397_c0_g1:5968	si_a142	TRINITY_DN397_c0_g1	5957	5977	5968	-23.50	-16.30	0.693617021276596	8.5	1-2,5977-5976;5-8,5973-5970;10-20,5968-5958	3-4,5975-5974[SIL];9-9,5969-5969[SIL];21-21,5957-5957[UP3]	.(((((((((((.((((..((&))..)))).))))))))))).	AUAAGACAACGAGGAUUUUUU&AAUUAAUCGUUGUUGUUUUAA	3	0.999999949556134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN397_c0_g1_5968_TPlot.pdf
TRINITY_DN397_c0_g1:5969	si_a141	TRINITY_DN397_c0_g1	5958	5978	5969	-23.80	-16.10	0.676470588235294	8.5	2-3,5977-5976;6-9,5973-5970;11-21,5968-5958	1-1,5978-5978[UP5];4-5,5975-5974[SIL];10-10,5969-5969[SIL]	(((((((((((.((((..((.&.))..)))).)))))))))))	UAAGACAACGAGGAUUUUUUU&UAAUUAAUCGUUGUUGUUUUA	3	0.999999997374536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN397_c0_g1_5969_TPlot.pdf
TRINITY_DN397_c0_g1:9150	si_a409	TRINITY_DN397_c0_g1	9139	9159	9150	-19.50	-12.70	0.651282051282051	8	1-12,9159-9148;14-16,9146-9144	13-13,9147-9147[SIL];17-21,9143-9139[UP3]	.....(((.((((((((((((&)))))))))))).))).....	AUUAAUGGUUAUAAACAAGAC&GUUUUGUUUAUAUUUAAAUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN397_c0_g1_9150_TPlot.pdf
TRINITY_DN397_c0_g1:9151	si_a408	TRINITY_DN397_c0_g1	9140	9160	9151	-20.10	-13.70	0.681592039800995	7	1-13,9160-9148;15-17,9146-9144	14-14,9147-9147[SIL];18-21,9143-9140[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UUAAUGGUUAUAAACAAGACA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN397_c0_g1_9151_TPlot.pdf
TRINITY_DN397_c0_g1:9152	si_a407	TRINITY_DN397_c0_g1	9141	9161	9152	-19.80	-14.40	0.727272727272727	6	1-14,9161-9148;16-18,9146-9144	15-15,9147-9147[SIL];19-21,9143-9141[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	UAAUGGUUAUAAACAAGACAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999987827342778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN397_c0_g1_9152_TPlot.pdf
TRINITY_DN397_c0_g1:9153	si_a406	TRINITY_DN397_c0_g1	9142	9162	9153	-19.80	-14.40	0.727272727272727	6	2-15,9161-9148;17-19,9146-9144	1-1,9162-9162[UP5];16-16,9147-9147[SIL];20-21,9143-9142[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	AAUGGUUAUAAACAAGACAAC&AUUGUUUUGUUUAUAUUUAAA	3	0.999999522802842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN397_c0_g1_9153_TPlot.pdf
TRINITY_DN397_c0_g1:9154	si_a405	TRINITY_DN397_c0_g1	9143	9163	9154	-19.80	-14.40	0.727272727272727	7	3-16,9161-9148;18-20,9146-9144	1-2,9163-9162[UP5];17-17,9147-9147[SIL];21-21,9143-9143[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	AUGGUUAUAAACAAGACAACU&AAUUGUUUUGUUUAUAUUUAA	4	0.999999983116437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN397_c0_g1_9154_TPlot.pdf
TRINITY_DN397_c0_g1:9156	si_a403	TRINITY_DN397_c0_g1	9145	9165	9156	-22.00	-14.30	0.65	7	1-3,9165-9163;5-18,9161-9148	4-4,9162-9162[SIL];19-21,9147-9145[UP3]	...((((((((((((((.(((&))).))))))))))))))...	GGUUAUAAACAAGACAACUUU&AGAAUUGUUUUGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN397_c0_g1_9156_TPlot.pdf
TRINITY_DN397_c0_g1:9157	si_a402	TRINITY_DN397_c0_g1	9146	9166	9157	-22.40	-14.80	0.660714285714286	6.5	1-4,9166-9163;6-19,9161-9148	5-5,9162-9162[SIL];20-21,9147-9146[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GUUAUAAACAAGACAACUUUG&UAGAAUUGUUUUGUUUAUAUU	3	0.999999999990747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN397_c0_g1_9157_TPlot.pdf
TRINITY_DN397_c0_g1:9238	si_a341	TRINITY_DN397_c0_g1	9227	9247	9238	-27.80	-18.70	0.672661870503597	7.5	1-13,9247-9235;15-17,9233-9231	14-14,9234-9234[SIL];18-21,9230-9227[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UCAAAGUUUUUUUGGGGCAAG&CUUGUCCCGAAAAUAUUAAUU	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN397_c0_g1_9238_TPlot.pdf
TRINITY_DN397_c0_g1:9245	si_a334	TRINITY_DN397_c0_g1	9234	9254	9245	-30.70	-21.40	0.697068403908795	6.5	1-6,9254-9249;8-20,9247-9235	7-7,9248-9248[SIL];21-21,9234-9234[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UUUUUUGGGGCAAGUAGUAGA&UUUAUUCCUUGUCCCGAAAAU	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN397_c0_g1_9245_TPlot.pdf
TRINITY_DN397_c0_g1:9246	si_a333	TRINITY_DN397_c0_g1	9235	9255	9246	-30.60	-21.50	0.702614379084967	6	2-7,9254-9249;9-21,9247-9235	1-1,9255-9255[UP5];8-8,9248-9248[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UUUUUGGGGCAAGUAGUAGAU&UUUUAUUCCUUGUCCCGAAAA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN397_c0_g1_9246_TPlot.pdf
TRINITY_DN397_c0_g1:9247	si_a332	TRINITY_DN397_c0_g1	9236	9256	9247	-30.60	-20.60	0.673202614379085	8	3-8,9254-9249;10-21,9247-9236	1-2,9256-9255[UP5];9-9,9248-9248[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UUUUGGGGCAAGUAGUAGAUG&UUUUUAUUCCUUGUCCCGAAA	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN397_c0_g1_9247_TPlot.pdf
TRINITY_DN397_c0_g1:9315	si_s454	TRINITY_DN397_c0_g1	9305	9324	9315	-25.50	-16.70	0.654901960784314	5.5	1-6,9324-9319;8-11,9317-9314;13-20,9313-9306	7-7,9318-9318[SIL];12-12,x-x[BULq];21-21,9305-9305[UP3]	.((((((((-((((.((((((&)))))).)))).)))))))).	UUGUGAGAU-AUUGGUGUUAU&AUAACAACAAUUAUCUCAUAU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN397_c0_g1_9315_TPlot.pdf
TRINITY_DN397_c0_g1:9346	si_s894	TRINITY_DN397_c0_g1	9334	9355	9346	-29.10	-19.30	0.663230240549828	7	2-13,9354-9343;14-21,9341-9334	1-1,9355-9355[UP5];x-x,9342-9342[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AAAUUGAAUGGGAGGGUUUAUA&AAUAGGCUUUCUC-UUCAAUUU	3	0.99999997930005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN397_c0_g1_9346_TPlot.pdf
TRINITY_DN397_c0_g1:9376	si_s27	TRINITY_DN397_c0_g1	9364	9385	9376	-27.00	-18.00	0.666666666666667	7.5	1-10,9385-9376;11-20,9374-9365	x-x,9375-9375[BULt];21-21,9364-9364[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	AGAGGGUUUAGAUUGUAAUUGA&UUGAUUGCAA-CUAAAUCUUUA	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN397_c0_g1_9376_TPlot.pdf
TRINITY_DN397_c0_g1:9377	si_s26	TRINITY_DN397_c0_g1	9365	9386	9377	-26.70	-17.50	0.655430711610487	7.5	2-11,9385-9376;12-21,9374-9365	1-1,9386-9386[UP5];x-x,9375-9375[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	GAGGGUUUAGAUUGUAAUUGAA&AUUGAUUGCAA-CUAAAUCUUU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN397_c0_g1_9377_TPlot.pdf
TRINITY_DN397_c8_g1:969	si_a380	TRINITY_DN397_c8_g1	958	978	969	-24.00	-15.60	0.65	8	4-14,975-965;16-20,963-959	1-3,978-976[UP5];15-15,964-964[SIL];21-21,958-958[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	UUUCUUUAUUUGAAAUCAGUA&AAAUGAUUUCGAAUUAAGAAU	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN397_c8_g1_969_TPlot.pdf
TRINITY_DN3981_c0_g1:4755	si_a312	TRINITY_DN3981_c0_g1	4744	4764	4755	-31.20	-21.80	0.698717948717949	10	1-4,4764-4761;6-7,4759-4758;9-17,4756-4748	5-5,4760-4760[SIL];8-8,4757-4757[SIL];18-21,4747-4744[UP3]	....(((((((((.((.((((&)))).)).)))))))))....	CACACAUGGAUAGUUCGGAGC&GCUUGGAUUUAUCCAUGAUUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN3981_c0_g1_4755_TPlot.pdf
TRINITY_DN3981_c0_g1:4927	si_s709	TRINITY_DN3981_c0_g1	4916	4936	4927	-32.00	-21.10	0.659375	7	2-5,4935-4932;8-20,4929-4917	1-1,4936-4936[UP5];6-7,4931-4930[SIL];21-21,4916-4916[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	UUCUUUCCCUGUUUUGUAAUU&UAUUAGUGAACAGGGAAAGAU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s709_TRINITY_DN3981_c0_g1_4927_TPlot.pdf
TRINITY_DN3982_c0_g1:4137	si_a123	TRINITY_DN3982_c0_g1	4126	4146	4137	-26.60	-18.00	0.676691729323308	9	1-14,4146-4133	15-21,4132-4126[UP3]	.......((((((((((((((&)))))))))))))).......	AAAAUUCUGCUAUAGAACAGG&CUUGUUUUAUAGCAAUAGUAA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN3982_c0_g1_4137_TPlot.pdf
TRINITY_DN3982_c0_g1:4140	si_a120	TRINITY_DN3982_c0_g1	4129	4149	4140	-30.50	-22.40	0.734426229508197	9	3-17,4147-4133	1-2,4149-4148[UP5];18-21,4132-4129[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUUCUGCUAUAGAACAGGCAG&GAGCUUGUUUUAUAGCAAUAG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN3982_c0_g1_4140_TPlot.pdf
TRINITY_DN39832_c0_g1:1038	si_a878	TRINITY_DN39832_c0_g1	1025	1047	1038	-26.70	-17.40	0.651685393258427	9.5	2-11,1046-1037;12-18,1034-1028	1-1,1047-1047[UP5];x-x,1036-1035[BULt];19-21,1027-1025[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	UAUUGUUGAUGAUGCAACUAGAC&AUUUAGUUGCA--AUCAAUAUAG	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN39832_c0_g1_1038_TPlot.pdf
TRINITY_DN39832_c0_g1:1048	si_a868	TRINITY_DN39832_c0_g1	1037	1057	1048	-24.80	-17.10	0.689516129032258	5.5	1-8,1057-1050;10-10,1048-1048;12-21,1046-1037	9-9,1049-1049[SIL];11-11,1047-1047[SIL]	((((((((((.(.((((((((&)))))))).).))))))))))	UGCAACUAGACCAUUAGUAAU&AUUAUUAAAGAUUUAGUUGCA	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN39832_c0_g1_1048_TPlot.pdf
TRINITY_DN39832_c0_g1:971	si_s18	TRINITY_DN39832_c0_g1	960	980	971	-27.50	-18.00	0.654545454545455	9.5	2-11,979-970;13-17,968-964;20-20,961-961	1-1,980-980[UP5];12-12,969-969[SIL];18-19,963-962[SIL];21-21,960-960[UP3]	.(..(((((.((((((((((.&.)))))))))).)))))..).	UGGAGCGAUGGAUAUGGUGAA&AUUACUAUAUUGAUUGCAACU	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN39832_c0_g1_971_TPlot.pdf
TRINITY_DN39832_c0_g1:972	si_s17	TRINITY_DN39832_c0_g1	961	981	972	-27.20	-18.00	0.661764705882353	10.5	3-12,979-970;14-18,968-964	1-2,981-980[UP5];13-13,969-969[SIL];19-21,963-961[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	GGAGCGAUGGAUAUGGUGAAA&UAUUACUAUAUUGAUUGCAAC	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN39832_c0_g1_972_TPlot.pdf
TRINITY_DN39832_c0_g1:973	si_s16	TRINITY_DN39832_c0_g1	962	982	973	-25.60	-18.00	0.703125	11	4-13,979-970;15-19,968-964	1-3,982-980[UP5];14-14,969-969[SIL];20-21,963-962[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	GAGCGAUGGAUAUGGUGAAAA&UUAUUACUAUAUUGAUUGCAA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN39832_c0_g1_973_TPlot.pdf
TRINITY_DN39832_c0_g1:974	si_s15	TRINITY_DN39832_c0_g1	963	983	974	-25.60	-18.00	0.703125	12	5-14,979-970;16-20,968-964	1-4,983-980[UP5];15-15,969-969[SIL];21-21,963-963[UP3]	.(((((.((((((((((....&....)))))))))).))))).	AGCGAUGGAUAUGGUGAAAAG&AUUAUUACUAUAUUGAUUGCA	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN39832_c0_g1_974_TPlot.pdf
TRINITY_DN3984_c0_g1:1332	si_a284	TRINITY_DN3984_c0_g1	1321	1341	1332	-28.30	-18.50	0.653710247349823	8	4-7,1338-1335;9-21,1333-1321	1-3,1341-1339[UP5];8-8,1334-1334[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UUUUAGAUUCAAGAGAUCAGA&AAAGAUCGCUUGGAUUUAAAA	2	0.999508005532118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN3984_c0_g1_1332_TPlot.pdf
TRINITY_DN3984_c0_g1:923	si_s814	TRINITY_DN3984_c0_g1	912	932	923	-26.60	-17.40	0.654135338345865	9	1-13,932-920	14-21,919-912[UP3]	........(((((((((((((&)))))))))))))........	GAAGUUAAAAGAAAAGGUGAC&GUUACCUUUUCUUAAUAAUGA	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN3984_c0_g1_923_TPlot.pdf
TRINITY_DN3984_c0_g1:924	si_s813	TRINITY_DN3984_c0_g1	913	933	924	-27.10	-17.70	0.653136531365314	9	2-14,932-920	1-1,933-933[UP5];15-21,919-913[UP3]	.......(((((((((((((.&.))))))))))))).......	AAGUUAAAAGAAAAGGUGACC&CGUUACCUUUUCUUAAUAAUG	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN3984_c0_g1_924_TPlot.pdf
TRINITY_DN39850_c0_g1:618	si_s192	TRINITY_DN39850_c0_g1	606	627	618	-28.00	-18.60	0.664285714285714	9.5	2-3,626-625;6-12,622-616;13-21,614-606	1-1,627-627[UP5];4-5,624-623[SIL];x-x,615-615[BULt]	(((((((((.(((((((..((.&.))..)))))))-)))))))))	GUGCAUUCCGAGAAUGACAGUA&AACGAUUAUUUU-GGAAUGUAC	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN39850_c0_g1_618_TPlot.pdf
TRINITY_DN39887_c0_g1:1202	si_s636	TRINITY_DN39887_c0_g1	1191	1214	1202	-40.80	-26.90	0.659313725490196	12	2-9,1213-1206;10-13,1202-1199;15-17,1197-1195;19-21,1193-1191	1-1,1214-1214[UP5];x-x,1205-1203[BULt];14-14,1198-1198[SIL];18-18,1194-1194[SIL]	(((.(((.((((...((((((((.&.))))))))---)))).))).)))	UCGUGGGGAGGCUCAGCCUGCGAG&UUCGUAGGC---GUUUGCCCUCGA	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN39887_c0_g1_1202_TPlot.pdf
TRINITY_DN398_c0_g1:1046	si_s71	TRINITY_DN398_c0_g1	1035	1055	1046	-25.70	-17.20	0.669260700389105	7.5	1-16,1055-1040	17-21,1039-1035[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUAUUAGAGAAAAAAUGGAGG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN398_c0_g1_1046_TPlot.pdf
TRINITY_DN398_c0_g1:1047	si_s70	TRINITY_DN398_c0_g1	1036	1056	1047	-25.80	-17.20	0.666666666666667	7.5	2-17,1055-1040	1-1,1056-1056[UP5];18-21,1039-1036[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUUAGAGAAAAAAUGGAGGA&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN398_c0_g1_1047_TPlot.pdf
TRINITY_DN398_c0_g1:1049	si_s68	TRINITY_DN398_c0_g1	1038	1058	1049	-23.10	-17.20	0.744588744588744	9.5	4-19,1055-1040	1-3,1058-1056[UP5];20-21,1039-1038[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUAGAGAAAAAAUGGAGGAUC&CAACUUCUAUUUUUUUUCUUU	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN398_c0_g1_1049_TPlot.pdf
TRINITY_DN398_c0_g1:1067	si_a321	TRINITY_DN398_c0_g1	1054	1076	1067	-26.70	-17.40	0.651685393258427	8.5	1-7,1076-1070;9-17,1068-1060;19-21,1056-1054	8-8,1069-1069[SIL];18-18,1059-1057[AILt]	(((...(((((((((.(((((((&))))))).)))))))))--.)))	GGAUCUUAGAGAGGUGAUGGAUG&UAUCCAUGAUUUUUUUA--UUCC	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN398_c0_g1_1067_TPlot.pdf
TRINITY_DN398_c0_g1:1068	si_a320	TRINITY_DN398_c0_g1	1057	1077	1068	-24.40	-16.10	0.659836065573771	9.5	1-8,1077-1070;10-18,1068-1060	9-9,1069-1069[SIL];19-21,1059-1057[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UCUUAGAGAGGUGAUGGAUGG&UUAUCCAUGAUUUUUUUAUUC	4	0.99999999145674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN398_c0_g1_1068_TPlot.pdf
TRINITY_DN398_c0_g1:1443	si_a119	TRINITY_DN398_c0_g1	1432	1452	1443	-30.30	-22.10	0.729372937293729	7	2-13,1451-1440;15-17,1438-1436	1-1,1452-1452[UP5];14-14,1439-1439[SIL];18-21,1435-1432[UP3]	....(((.((((((((((((.&.)))))))))))).)))....	ACAAGCUUUAGAACAAGCUCU&CGAGCUUGUUUUAUAGCAAUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN398_c0_g1_1443_TPlot.pdf
TRINITY_DN398_c0_g1:1447	si_a115	TRINITY_DN398_c0_g1	1436	1456	1447	-30.40	-21.60	0.710526315789474	10.5	6-17,1451-1440;19-21,1438-1436	1-5,1456-1452[UP5];18-18,1439-1439[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	GCUUUAGAACAAGCUCUACAG&AAUACGAGCUUGUUUUAUAGC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN398_c0_g1_1447_TPlot.pdf
TRINITY_DN398_c0_g1:3456	si_a51	TRINITY_DN398_c0_g1	3437	3465	3456	-41.10	-27.60	0.671532846715328	14	1-12,3465-3454;13-16,3449-3446;17-21,3441-3437	x-x,3453-3450[BULt];x-x,3445-3442[BULt]	(((((....((((....((((((((((((&))))))))))))----))))----)))))	GAAGCCAAAGAGUUCCACGACUCUUGGAC&GUCUAGGAGUCG----ACUC----GCUUC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN398_c0_g1_3456_TPlot.pdf
TRINITY_DN398_c0_g1:4606	si_a625	TRINITY_DN398_c0_g1	4595	4615	4606	-30.60	-20.60	0.673202614379085	10	4-10,4612-4606;12-21,4604-4595	1-3,4615-4613[UP5];11-11,4605-4605[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GAAGUCGACAAAGUAUGCAAA&UAGGCGUAUUAUGUCGAUUUU	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN398_c0_g1_4606_TPlot.pdf
TRINITY_DN398_c0_g1:5105	si_a143	TRINITY_DN398_c0_g1	5094	5115	5105	-25.10	-18.20	0.725099601593625	6.5	1-5,5115-5111;6-18,5109-5097	x-x,5110-5110[BULt];19-21,5096-5094[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	ACAAAGACAACAACGAGUUGAU&AUUAA-UCGUUGUUGUUUUAAG	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN398_c0_g1_5105_TPlot.pdf
TRINITY_DN398_c0_g1:5108	si_a140	TRINITY_DN398_c0_g1	5097	5118	5108	-25.20	-18.80	0.746031746031746	6.5	3-8,5116-5111;9-21,5109-5097	1-2,5118-5117[UP5];x-x,5110-5110[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	AAGACAACAACGAGUUGAUUCC&GUAAUUAA-UCGUUGUUGUUUU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN398_c0_g1_5108_TPlot.pdf
TRINITY_DN398_c0_g1:614	si_a633	TRINITY_DN398_c0_g1	601	623	614	-26.40	-18.40	0.696969696969697	10.5	5-14,619-610;15-21,607-601	1-4,623-620[UP5];x-x,609-608[BULt]	(((((((..((((((((((....&....))))))))))--)))))))	UGCUCGAUUAGAAAUCGACUUGC&UUAUGUCGAUUUUU--UUGAGUA	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN398_c0_g1_614_TPlot.pdf
TRINITY_DN398_c0_g2:759	si_a69	TRINITY_DN398_c0_g2	748	768	759	-24.00	-16.70	0.695833333333333	5.5	1-6,768-763;8-19,761-750	7-7,762-762[SIL];20-21,749-748[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AAGAAGAACGAUUUCAAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN398_c0_g2_759_TPlot.pdf
TRINITY_DN3991_c0_g1:1822	si_a71	TRINITY_DN3991_c0_g1	1811	1831	1822	-23.30	-17.10	0.733905579399142	8	1-11,1831-1821;13-18,1819-1814	12-12,1820-1820[SIL];19-21,1813-1811[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UCCUGGAGAUCGGUUUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN3991_c0_g1_1822_TPlot.pdf
TRINITY_DN3991_c0_g1:1826	si_a67	TRINITY_DN3991_c0_g1	1815	1834	1826	-27.20	-18.30	0.672794117647059	6	1-3,1834-1832;5-15,1831-1821;17-21,1819-1815	4-4,x-x[BULq];16-16,1820-1820[SIL]	(((((.(((((((((((-(((&))).))))))))))).)))))	GGAGAUCGGUUUGAAAG-GGC&GCUUCUUUCAAAUUGUUUUUC	3	0.999999997855688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN3991_c0_g1_1826_TPlot.pdf
TRINITY_DN3991_c0_g1:2438	si_s290	TRINITY_DN3991_c0_g1	2430	2447	2438	-38.10	-26.30	0.690288713910761	8.5	1-10,2447-2438;14-21,2437-2430	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	GCAGUUCC---CGAUUGGGUG&CGCCUAGUCGAUUGGAAUUGC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN3991_c0_g1_2438_TPlot.pdf
TRINITY_DN3991_c0_g1:3931	si_s4	TRINITY_DN3991_c0_g1	3920	3940	3931	-21.60	-16.30	0.75462962962963	12	5-19,3936-3922	1-4,3940-3937[UP5];20-21,3921-3920[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCGUGAUGAUGAGUGAUCGUC&UUAUAUUACUUAUUAUUACUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN3991_c0_g1_3931_TPlot.pdf
TRINITY_DN3991_c0_g1:4017	si_a487	TRINITY_DN3991_c0_g1	4006	4026	4017	-24.80	-17.70	0.713709677419355	15	7-21,4020-4006	1-6,4026-4021[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGGCGGCGUGUUCCUGCCG&UAUAUAGAAUAUGUCGUUUUU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN3991_c0_g1_4017_TPlot.pdf
TRINITY_DN3991_c0_g1:4018	si_a486	TRINITY_DN3991_c0_g1	4007	4027	4018	-24.90	-16.50	0.662650602409639	16	8-21,4020-4007	1-7,4027-4021[UP5]	((((((((((((((.......&.......))))))))))))))	AAGGCGGCGUGUUCCUGCCGA&UUAUAUAGAAUAUGUCGUUUU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN3991_c0_g1_4018_TPlot.pdf
TRINITY_DN3991_c0_g1:5210	si_a284	TRINITY_DN3991_c0_g1	5199	5219	5210	-28.30	-20.40	0.720848056537102	11	3-14,5217-5206	1-2,5219-5218[UP5];15-21,5205-5199[UP3]	.......((((((((((((..&..)))))))))))).......	CAGCAAUUCCAAGCGGUCUCG&AAAGAUCGCUUGGAUUUAAAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN3991_c0_g1_5210_TPlot.pdf
TRINITY_DN3991_c0_g1:5499	si_a59	TRINITY_DN3991_c0_g1	5486	5508	5499	-34.00	-22.90	0.673529411764706	9.5	1-13,5508-5496;14-17,5493-5490	x-x,5495-5494[BULt];18-21,5489-5486[UP3]	....((((..(((((((((((((&)))))))))))))--))))....	UCAGGAGACCGGAGCGGGUUGAC&GUCGACUCGCUUC--UUUCAAAU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN3991_c0_g1_5499_TPlot.pdf
TRINITY_DN3991_c0_g1:5507	si_a51	TRINITY_DN3991_c0_g1	5496	5518	5507	-41.10	-27.40	0.666666666666667	10	1-3,5518-5516;5-7,5514-5512;9-21,5508-5496	4-4,5515-5515[SIL];8-8,5511-5509[AILt]	(((((((((((((...(((.(((&))).)))--.)))))))))))))	GGAGCGGGUUGACCAGCCUCGAC&GUCUAGG--AGUCGACUCGCUUC	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN3991_c0_g1_5507_TPlot.pdf
TRINITY_DN3991_c0_g1:8261	si_a565	TRINITY_DN3991_c0_g1	8249	8272	8261	-37.40	-24.60	0.657754010695187	8	1-2,8272-8271;3-5,8269-8267;6-13,8265-8258;14-19,8256-8251	x-x,8270-8270[BULt];x-x,8266-8266[BULt];x-x,8257-8257[BULt];20-21,8250-8249[UP3]	..((((((.((((((((.(((.((&))-)))-))))))))-))))))..	CCCGUGCGAAUUCACGGCGGAUGA&UC-UCC-CCGUGAAU-CGUAUGUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN3991_c0_g1_8261_TPlot.pdf
TRINITY_DN3991_c0_g1:8869	si_s627	TRINITY_DN3991_c0_g1	8859	8878	8869	-36.10	-26.00	0.720221606648199	7	2-3,8877-8876;5-14,8874-8865;16-19,8864-8861	1-1,8878-8878[UP5];4-4,8875-8875[SIL];15-15,x-x[BULq];20-21,8860-8859[UP3]	..((((-((((((((((.((.&.)).)))))))))).))))..	CCCGCC-ACGAAGAGAUGGCA&AGCGAUCUUUUCGUAGGCGUU	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN3991_c0_g1_8869_TPlot.pdf
TRINITY_DN3991_c0_g1:8870	si_s626	TRINITY_DN3991_c0_g1	8860	8879	8870	-36.10	-26.00	0.720221606648199	8	3-4,8877-8876;6-15,8874-8865;17-20,8864-8861	1-2,8879-8878[UP5];5-5,8875-8875[SIL];16-16,x-x[BULq];21-21,8860-8860[UP3]	.((((-((((((((((.((..&..)).)))))))))).)))).	CCGCC-ACGAAGAGAUGGCAA&AAGCGAUCUUUUCGUAGGCGU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN3991_c0_g1_8870_TPlot.pdf
TRINITY_DN3991_c0_g1:8871	si_s625	TRINITY_DN3991_c0_g1	8861	8880	8871	-37.00	-25.70	0.694594594594595	9	4-5,8877-8876;7-16,8874-8865;18-21,8864-8861	1-3,8880-8878[UP5];6-6,8875-8875[SIL];17-17,x-x[BULq]	((((-((((((((((.((...&...)).)))))))))).))))	CGCC-ACGAAGAGAUGGCAAG&CAAGCGAUCUUUUCGUAGGCG	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN3991_c0_g1_8871_TPlot.pdf
TRINITY_DN3991_c0_g1:8898	si_s93	TRINITY_DN3991_c0_g1	8884	8907	8898	-34.80	-23.30	0.669540229885058	9.5	1-13,8907-8895;14-18,8891-8887	x-x,8894-8892[BULt];19-21,8886-8884[UP3]	...(((((...(((((((((((((&)))))))))))))---)))))...	UCGCCGGAGACGUGAAGGGGAAGA&UCUUCUUCUUCGC---UUCGGAUU	3	0.999999999883783	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN3991_c0_g1_8898_TPlot.pdf
TRINITY_DN3991_c0_g1:8901	si_s90	TRINITY_DN3991_c0_g1	8887	8910	8901	-35.30	-23.70	0.671388101983003	9	1-2,8910-8909;4-16,8907-8895;17-21,8891-8887	3-3,8908-8908[SIL];x-x,8894-8892[BULt]	(((((...(((((((((((((.((&)).)))))))))))))---)))))	CCGGAGACGUGAAGGGGAAGACGG&CUUUCUUCUUCUUCGC---UUCGG	4	0.999999999998533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN3991_c0_g1_8901_TPlot.pdf
TRINITY_DN3991_c0_g1:8903	si_s88	TRINITY_DN3991_c0_g1	8892	8917	8903	-34.80	-23.30	0.669540229885058	13.5	1-5,8917-8913;6-18,8907-8895;20-21,8893-8892	x-x,8912-8908[BULt];19-19,8894-8894[SIL]	((.(((((((((((((.....(((((&)))))-----))))))))))))).))	GACGUGAAGGGGAAGACGGCCAAGGA&UCCUU-----UCUUCUUCUUCGCUUC	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN3991_c0_g1_8903_TPlot.pdf
TRINITY_DN3991_c0_g1:8905	si_s86	TRINITY_DN3991_c0_g1	8894	8919	8905	-32.90	-22.90	0.696048632218845	14.5	2-7,8918-8913;8-20,8907-8895	1-1,8919-8919[UP5];x-x,8912-8908[BULt];21-21,8894-8894[UP3]	.(((((((((((((.....((((((.&.))))))-----))))))))))))).	CGUGAAGGGGAAGACGGCCAAGGAGU&UUUCCUU-----UCUUCUUCUUCGCU	3	0.999999999988898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN3991_c0_g1_8905_TPlot.pdf
TRINITY_DN3991_c0_g1:8906	si_s85	TRINITY_DN3991_c0_g1	8895	8920	8906	-33.80	-22.60	0.668639053254438	15.5	3-8,8918-8913;9-21,8907-8895	1-2,8920-8919[UP5];x-x,8912-8908[BULt]	(((((((((((((.....((((((..&..))))))-----)))))))))))))	GUGAAGGGGAAGACGGCCAAGGAGUG&CUUUCCUU-----UCUUCUUCUUCGC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN3991_c0_g1_8906_TPlot.pdf
TRINITY_DN3991_c0_g1:8934	si_s609	TRINITY_DN3991_c0_g1	8920	8943	8934	-27.70	-19.70	0.711191335740072	7.5	1-10,8943-8934;12-15,8932-8929;16-21,8925-8920	11-11,8933-8933[SIL];x-x,8928-8926[BULt]	((((((...((((.((((((((((&)))))))))).))))---))))))	GCUUGGCUCGUUUCAAGGAGAUUC&GAAUCUUUUUUAAAU---CCAAGC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN3991_c0_g1_8934_TPlot.pdf
TRINITY_DN3991_c0_g1:8935	si_s608	TRINITY_DN3991_c0_g1	8921	8944	8935	-26.70	-19.00	0.711610486891386	7.5	1-11,8944-8934;13-16,8932-8929;17-21,8925-8921	12-12,8933-8933[SIL];x-x,8928-8926[BULt]	(((((...((((.(((((((((((&))))))))))).))))---)))))	CUUGGCUCGUUUCAAGGAGAUUCG&CGAAUCUUUUUUAAAU---CCAAG	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN3991_c0_g1_8935_TPlot.pdf
TRINITY_DN3991_c0_g1:9082	si_s462	TRINITY_DN3991_c0_g1	9071	9091	9082	-31.70	-23.00	0.725552050473186	11.5	5-15,9087-9077;18-21,9074-9071	1-4,9091-9088[UP5];16-17,9076-9075[SIL]	((((..(((((((((((....&....)))))))))))..))))	UCCGCGGGGUGUGAGGUCUGG&AAUUAUCUCAUAUCCAACGGA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s462_TRINITY_DN3991_c0_g1_9082_TPlot.pdf
TRINITY_DN3992_c0_g1:758	si_s518	TRINITY_DN3992_c0_g1	747	767	758	-24.60	-16.18	0.657723577235772	6	1-13,767-755;17-19,751-749	14-16,754-752[SIL];20-21,748-747[UP3]	..(((...(((((((((((((&)))))))))))))...)))..	GAGAUGCAGAAUUAAGAGUAU&AUAUUCUUAAUUCGAAAUCAU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN3992_c0_g1_758_TPlot.pdf
TRINITY_DN39935_c0_g1:272	si_s86	TRINITY_DN39935_c0_g1	261	281	272	-32.90	-26.60	0.808510638297872	5.5	1-18,281-264	19-21,263-261[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGAGAGGAAGAAGAGGGGAAA&UUUCCUUUCUUCUUCUUCGCU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN39935_c0_g1_272_TPlot.pdf
TRINITY_DN39937_c0_g1:795	si_a784	TRINITY_DN39937_c0_g1	784	804	795	-24.70	-17.10	0.692307692307692	8.5	3-16,802-789	1-2,804-803[UP5];17-21,788-784[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAUCAAGAGAAAUAGAAGACA&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999921187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN39937_c0_g1_795_TPlot.pdf
TRINITY_DN39939_c0_g1:289	si_a127	TRINITY_DN39939_c0_g1	278	298	289	-23.10	-19.00	0.822510822510822	9	1-16,298-283	17-21,282-278[UP3]	.....((((((((((((((((&)))))))))))))))).....	GACGAUGCUGUUGCUGUAGAG&UUUUAUAGCAAUAGUAAUUAA	1	0.00246092562558631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN39939_c0_g1_289_TPlot.pdf
TRINITY_DN3994_c0_g1:1312	si_s67	TRINITY_DN3994_c0_g1	1301	1321	1312	-25.60	-17.20	0.671875	5	1-8,1321-1314;10-13,1312-1309;15-21,1307-1301	9-9,1313-1313[SIL];14-14,1308-1308[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	GAGGAAACGAAUUGAAGUUGU&GCAACUUCUAUUUUUUUUCUU	2	0.999999328332202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN3994_c0_g1_1312_TPlot.pdf
TRINITY_DN39955_c0_g1:173	si_a800	TRINITY_DN39955_c0_g1	159	182	173	-33.70	-24.40	0.724035608308605	7	2-14,181-169;15-21,165-159	1-1,182-182[UP5];x-x,168-166[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	UUUUGCUGGUUCGGAUUGGAGAGC&AUUUUCCAAUCCGA---AGCGAAG	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN39955_c0_g1_173_TPlot.pdf
TRINITY_DN39973_c0_g1:222	si_a222	TRINITY_DN39973_c0_g1	210	231	222	-25.20	-16.50	0.654761904761905	14	5-10,227-222;11-19,220-212	1-4,231-228[UP5];x-x,221-221[BULt];20-21,211-210[UP3]	..(((((((((.((((((....&....))))))-)))))))))..	UAUGUGGAAGCUGUGAGUGCAC&UUAAACUCAU-GUUUCUAUAAU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN39973_c0_g1_222_TPlot.pdf
TRINITY_DN39973_c0_g1:444	si_s27	TRINITY_DN39973_c0_g1	433	453	444	-27.00	-17.80	0.659259259259259	6.5	1-12,453-442;14-18,440-436	13-13,441-441[SIL];19-21,435-433[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GACAGAUUAAGUUGUAAUCGG&UUGAUUGCAACUAAAUCUUUA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN39973_c0_g1_444_TPlot.pdf
TRINITY_DN39973_c0_g1:445	si_s26	TRINITY_DN39973_c0_g1	434	454	445	-26.70	-19.40	0.726591760299625	6	1-13,454-442;15-19,440-436	14-14,441-441[SIL];20-21,435-434[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	ACAGAUUAAGUUGUAAUCGGU&AUUGAUUGCAACUAAAUCUUU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN39973_c0_g1_445_TPlot.pdf
TRINITY_DN39973_c0_g1:447	si_s24	TRINITY_DN39973_c0_g1	436	456	447	-27.30	-20.50	0.750915750915751	5	2-15,455-442;17-21,440-436	1-1,456-456[UP5];16-16,441-441[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AGAUUAAGUUGUAAUCGGUAC&AUAUUGAUUGCAACUAAAUCU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN39973_c0_g1_447_TPlot.pdf
TRINITY_DN39973_c0_g1:448	si_s23	TRINITY_DN39973_c0_g1	437	457	448	-27.00	-19.30	0.714814814814815	7	3-16,455-442;18-21,440-437	1-2,457-456[UP5];17-17,441-441[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAUUAAGUUGUAAUCGGUACU&UAUAUUGAUUGCAACUAAAUC	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN39973_c0_g1_448_TPlot.pdf
TRINITY_DN39973_c0_g1:492	si_s109	TRINITY_DN39973_c0_g1	481	502	492	-26.50	-20.00	0.754716981132076	9	1-8,502-495;11-18,491-484	9-10,494-492[AILt];19-21,483-481[UP3]	...((((((((...((((((((&))))))))-..))))))))...	GUCUUUUCUAUGUAUCCAAUCC&GGAUUGGA-AAAUAGAAAAAUA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN39973_c0_g1_492_TPlot.pdf
TRINITY_DN39973_c0_g1:495	si_s107	TRINITY_DN39973_c0_g1	483	504	495	-28.50	-20.10	0.705263157894737	10	3-10,502-495;13-20,491-484	1-2,504-503[UP5];11-12,494-492[AILt];21-21,483-483[UP3]	.((((((((...((((((((..&..))))))))-..)))))))).	CUUUUCUAUGUAUCCAAUCCAU&UCGGAUUGGA-AAAUAGAAAAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s107_TRINITY_DN39973_c0_g1_495_TPlot.pdf
TRINITY_DN39983_c0_g1:1024	si_s437	TRINITY_DN39983_c0_g1	1012	1033	1024	-19.70	-14.20	0.720812182741117	8.5	4-15,1030-1019;16-21,1017-1012	1-3,1033-1031[UP5];x-x,1018-1018[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	UUGUAUAAUAGUGUGUAAUAUU&AUAAUUACAUAUUAU-AUAUAA	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN39983_c0_g1_1024_TPlot.pdf
TRINITY_DN39983_c0_g1:826	si_a68	TRINITY_DN39983_c0_g1	812	836	826	-25.40	-17.30	0.681102362204724	12	1-7,836-830;8-12,828-824;13-20,820-813	x-x,829-829[BULt];x-x,823-821[BULt];21-21,812-812[UP3]	.((((((((...(((((.(((((((&)))))))-)))))---)))))))).	CGAAAGACGAAUGUUUGAAGAGAAG&CUUCUUU-CAAAU---UGUUUUUCA	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN39983_c0_g1_826_TPlot.pdf
TRINITY_DN3998_c0_g1:2072	si_a615	TRINITY_DN3998_c0_g1	2061	2081	2072	-35.50	-23.10	0.650704225352113	7.5	1-13,2081-2069;15-16,2067-2066	14-14,2068-2068[SIL];17-21,2065-2061[UP3]	.....((.(((((((((((((&))))))))))))).)).....	UCUGUCGGUUAGUCGGUUGGA&UCCAAUCGACUAGGCGUAUUA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a615_TRINITY_DN3998_c0_g1_2072_TPlot.pdf
TRINITY_DN3999_c0_g1:1160	si_a644	TRINITY_DN3999_c0_g1	1145	1169	1160	-29.30	-22.50	0.767918088737201	10	1-11,1169-1159;12-21,1154-1145	x-x,1158-1155[BULt]	((((((((((....(((((((((((&)))))))))))----))))))))))	UCCCGAUAUAAAGAUUAUUCAAGAA&UUUUUGAGUAA----UAUAUCGGGA	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN3999_c0_g1_1160_TPlot.pdf
TRINITY_DN399_c0_g1:1432	si_s54	TRINITY_DN399_c0_g1	1421	1442	1432	-32.50	-22.90	0.704615384615385	9.5	1-4,1442-1439;6-18,1436-1424	5-5,1438-1437[AILt];19-21,1423-1421[UP3]	...(((((((((((((..((((&))))-.)))))))))))))...	UCUGUUGUUGACUUGACUGUCC&GGAU-UUCAAGUUAGCAACUUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s54_TRINITY_DN399_c0_g1_1432_TPlot.pdf
TRINITY_DN399_c0_g1:1434	si_s52	TRINITY_DN399_c0_g1	1423	1444	1434	-31.30	-23.00	0.73482428115016	10	3-6,1442-1439;8-20,1436-1424	1-2,1444-1443[UP5];7-7,1438-1437[AILt];21-21,1423-1423[UP3]	.(((((((((((((..((((..&..))))-.))))))))))))).	UGUUGUUGACUUGACUGUCCGU&UUGGAU-UUCAAGUUAGCAACU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN399_c0_g1_1434_TPlot.pdf
TRINITY_DN399_c0_g1:1435	si_s51	TRINITY_DN399_c0_g1	1424	1445	1435	-30.70	-22.60	0.736156351791531	10	3-7,1443-1439;9-21,1436-1424	1-2,1445-1444[UP5];8-8,1438-1437[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GUUGUUGACUUGACUGUCCGUU&AUUGGAU-UUCAAGUUAGCAAC	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN399_c0_g1_1435_TPlot.pdf
TRINITY_DN399_c0_g1:1436	si_s50	TRINITY_DN399_c0_g1	1425	1446	1436	-29.00	-19.70	0.679310344827586	12	4-8,1443-1439;10-21,1436-1425	1-3,1446-1444[UP5];9-9,1438-1437[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	UUGUUGACUUGACUGUCCGUUU&AAUUGGAU-UUCAAGUUAGCAA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN399_c0_g1_1436_TPlot.pdf
TRINITY_DN4000_c0_g1:118	si_a464	TRINITY_DN4000_c0_g1	107	127	118	-19.60	-13.00	0.663265306122449	10.5	4-17,124-111	1-3,127-125[UP5];18-21,110-107[UP3]	....((((((((((((((...&...))))))))))))))....	CGCUGUUACAUAUUGUAUUCG&UAUAUAUAAUAUGUAAUUAUU	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN4000_c0_g1_118_TPlot.pdf
TRINITY_DN4000_c0_g1:2478	si_a319	TRINITY_DN4000_c0_g1	2467	2487	2478	-22.40	-17.00	0.758928571428572	4	1-12,2487-2476;14-15,2474-2473;17-21,2471-2467	13-13,2475-2475[SIL];16-16,2472-2472[SIL]	(((((.((.((((((((((((&)))))))))))).)).)))))	GAUGACGAUAUCAUGGAUAAG&UUUAUCCAUGAUUUUUUUAUU	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4000_c0_g1_2478_TPlot.pdf
TRINITY_DN4000_c0_g1:2479	si_a318	TRINITY_DN4000_c0_g1	2468	2488	2479	-22.50	-15.90	0.706666666666667	5	2-13,2487-2476;15-16,2474-2473;18-21,2471-2468	1-1,2488-2488[UP5];14-14,2475-2475[SIL];17-17,2472-2472[SIL]	((((.((.((((((((((((.&.)))))))))))).)).))))	AUGACGAUAUCAUGGAUAAGG&AUUUAUCCAUGAUUUUUUUAU	2	0.999766846148548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4000_c0_g1_2479_TPlot.pdf
TRINITY_DN4000_c0_g1:2575	si_a657	TRINITY_DN4000_c0_g1	2564	2584	2575	-33.80	-23.70	0.701183431952663	5	1-4,2584-2581;6-14,2579-2571;17-20,2568-2565	5-5,2580-2580[SIL];15-16,2570-2569[SIL];21-21,2564-2564[UP3]	.((((..(((((((((.((((&)))).)))))))))..)))).	UUCAAAUGGCAUUUCCGGAUA&UAUCGGGAAAUGCCUAUUGAU	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN4000_c0_g1_2575_TPlot.pdf
TRINITY_DN4000_c0_g1:2579	si_a653	TRINITY_DN4000_c0_g1	2568	2588	2579	-31.70	-21.00	0.662460567823344	12	5-8,2584-2581;10-18,2579-2571	1-4,2588-2585[UP5];9-9,2580-2580[SIL];19-21,2570-2568[UP3]	...(((((((((.((((....&....)))).)))))))))...	AAUGGCAUUUCCGGAUAAGCA&AAUAUAUCGGGAAAUGCCUAU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a653_TRINITY_DN4000_c0_g1_2579_TPlot.pdf
TRINITY_DN4000_c0_g1:2580	si_a652	TRINITY_DN4000_c0_g1	2569	2589	2580	-31.90	-21.00	0.658307210031348	13	6-9,2584-2581;11-19,2579-2571	1-5,2589-2585[UP5];10-10,2580-2580[SIL];20-21,2570-2569[UP3]	..(((((((((.((((.....&.....)))).)))))))))..	AUGGCAUUUCCGGAUAAGCAC&UAAUAUAUCGGGAAAUGCCUA	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN4000_c0_g1_2580_TPlot.pdf
TRINITY_DN40015_c0_g1:138	si_a148	TRINITY_DN40015_c0_g1	127	147	138	-30.30	-22.30	0.735973597359736	5.5	1-8,147-140;10-21,138-127	9-9,139-139[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	UUGACUUUAAAGAGGCAACGA&UCGUUGUUGUUUUAAGGUCAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN40015_c0_g1_138_TPlot.pdf
TRINITY_DN40026_c0_g1:542	si_a118	TRINITY_DN40026_c0_g1	531	553	542	-30.70	-20.30	0.661237785016287	10.5	1-7,553-547;8-18,544-534	x-x,546-545[BULt];19-21,533-531[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	AAGGCUAUGAGACAGAAGUUUGU&ACGAGCU--UGUUUUAUAGCAAU	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN40026_c0_g1_542_TPlot.pdf
TRINITY_DN40026_c0_g1:573	si_s203	TRINITY_DN40026_c0_g1	562	583	573	-35.50	-25.90	0.729577464788732	6	1-4,583-580;5-18,578-565	x-x,579-579[BULt];19-21,564-562[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	AUCCACAACUGGUAUAUAUCCA&UGGA-AUGUACCAGUUGUGUUC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN40026_c0_g1_573_TPlot.pdf
TRINITY_DN40026_c0_g1:578	si_s198	TRINITY_DN40026_c0_g1	567	588	578	-30.80	-21.80	0.707792207792208	12	6-9,583-580;10-21,578-567	1-5,588-584[UP5];x-x,579-579[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	CAACUGGUAUAUAUCCACCUUG&UAUUUUGGA-AUGUACCAGUUG	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN40026_c0_g1_578_TPlot.pdf
TRINITY_DN40026_c0_g1:635	si_s423	TRINITY_DN40026_c0_g1	624	643	635	-21.50	-14.80	0.688372093023256	6	1-7,643-637;9-19,636-626	8-8,x-x[BULq];20-21,625-624[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	UUAUUAUUGUUAU-UGGAGUA&UAUUCUAUAUAACAAUAAUUA	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN40026_c0_g1_635_TPlot.pdf
TRINITY_DN40026_c0_g1:636	si_s422	TRINITY_DN40026_c0_g1	625	644	636	-21.30	-15.80	0.741784037558685	5	1-8,644-637;10-20,636-626	9-9,x-x[BULq];21-21,625-625[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	UAUUAUUGUUAU-UGGAGUAU&AUAUUCUAUAUAACAAUAAUU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN40026_c0_g1_636_TPlot.pdf
TRINITY_DN40036_c0_g1:21	si_s809	TRINITY_DN40036_c0_g1	10	32	21	-28.50	-21.00	0.736842105263158	10.5	2-7,31-26;8-19,23-12	1-1,32-32[UP5];x-x,25-24[BULt];20-21,11-10[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	CAUGAGAGGAGGUGUGGCGAAGC&UCUUCGU--UACCUUUUCUUAAU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN40036_c0_g1_21_TPlot.pdf
TRINITY_DN40036_c0_g1:426	si_s641	TRINITY_DN40036_c0_g1	416	436	426	-39.20	-27.30	0.696428571428571	8.5	2-8,435-429;9-15,427-421;17-19,420-418	1-1,436-436[UP5];x-x,428-428[BULt];16-16,x-x[BULq];20-21,417-416[UP3]	..(((-(((((((.(((((((.&.)))))))-))))))).)))..	CCGUG-CGAGGGCAAGAUGCCG&AGGCGUUU-GCCCUCGAUACAA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN40036_c0_g1_426_TPlot.pdf
TRINITY_DN40036_c0_g1:47	si_a178	TRINITY_DN40036_c0_g1	36	56	47	-32.90	-27.80	0.844984802431611	6	1-5,56-52;7-21,50-36	6-6,51-51[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GGGGAGGUGUUGUCUCGGCGG&CCGUCUAGAUAAUAUCUUUCC	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN40036_c0_g1_47_TPlot.pdf
TRINITY_DN4003_c0_g1:345	si_a337	TRINITY_DN4003_c0_g1	334	355	345	-30.80	-23.20	0.753246753246753	8	2-7,354-349;9-21,346-334	1-1,355-355[UP5];8-8,348-347[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	AAUAUUUUCGGGGAAGAGGGAA&AUUCCUU-GUCCCGAAAAUAUU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN4003_c0_g1_345_TPlot.pdf
TRINITY_DN4003_c0_g1:348	si_a503	TRINITY_DN4003_c0_g1	337	357	348	-32.10	-21.30	0.663551401869159	7.5	2-6,356-352;8-19,350-339	1-1,357-357[UP5];7-7,351-351[SIL];20-21,338-337[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	AUUUUCGGGGAAGAGGGAAAU&UUUUUCGUCUUCCUUGGAAUG	4	0.999999982404815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN4003_c0_g1_348_TPlot.pdf
TRINITY_DN40045_c0_g1:286	si_a652	TRINITY_DN40045_c0_g1	274	295	286	-31.90	-20.80	0.652037617554859	9	3-5,293-291;7-17,289-279;18-19,277-276	1-2,295-294[UP5];6-6,290-290[SIL];x-x,278-278[BULt];20-21,275-274[UP3]	..((.(((((((((((.(((..&..))).)))))))))))-))..	CCGGACAUUUCCCGAUCUGUCU&UAAUAUAUCGGGAAAUG-CCUA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN40045_c0_g1_286_TPlot.pdf
TRINITY_DN4006_c0_g1:1647	si_a407	TRINITY_DN4006_c0_g1	1636	1656	1647	-19.80	-12.90	0.651515151515151	7.5	1-13,1656-1644;15-17,1642-1640	14-14,1643-1643[SIL];18-21,1639-1636[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UCUCGAACAUAAGCAAAACGA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4006_c0_g1_1647_TPlot.pdf
TRINITY_DN4006_c0_g1:1648	si_a406	TRINITY_DN4006_c0_g1	1637	1657	1648	-19.80	-12.90	0.651515151515151	7.5	2-14,1656-1644;16-18,1642-1640	1-1,1657-1657[UP5];15-15,1643-1643[SIL];19-21,1639-1637[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	CUCGAACAUAAGCAAAACGAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4006_c0_g1_1648_TPlot.pdf
TRINITY_DN4006_c0_g1:1649	si_a405	TRINITY_DN4006_c0_g1	1638	1658	1649	-19.80	-12.90	0.651515151515151	8.5	3-15,1656-1644;17-19,1642-1640	1-2,1658-1657[UP5];16-16,1643-1643[SIL];20-21,1639-1638[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UCGAACAUAAGCAAAACGAAG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4006_c0_g1_1649_TPlot.pdf
TRINITY_DN4006_c0_g1:601	si_a785	TRINITY_DN4006_c0_g1	590	610	601	-25.90	-19.10	0.737451737451738	3	1-11,610-600;12-14,598-596;16-21,595-590	x-x,599-599[BULt];15-15,x-x[BULq]	((((((-(((.(((((((((((&)))))))))))-))).))))))	GAAAAU-GAACAAAUAGAAGAG&CUCUUCUAUUU-UUCUAUUUUC	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4006_c0_g1_601_TPlot.pdf
TRINITY_DN4007_c1_g2:163	si_s767	TRINITY_DN4007_c1_g2	152	173	163	-28.10	-21.20	0.754448398576512	5.5	1-7,173-167;8-16,165-157;18-20,155-153	x-x,166-166[BULt];17-17,156-156[SIL];21-21,152-152[UP3]	.(((.(((((((((.(((((((&)))))))-))))))))).))).	UGCACUGGUGAUUACAUCGUUG&CAACGAU-UAAUUACUAUUGCU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN4007_c1_g2_163_TPlot.pdf
TRINITY_DN4007_c1_g2:164	si_s766	TRINITY_DN4007_c1_g2	153	174	164	-28.20	-21.00	0.74468085106383	5	2-8,173-167;9-17,165-157;19-21,155-153	1-1,174-174[UP5];x-x,166-166[BULt];18-18,156-156[SIL]	(((.(((((((((.(((((((.&.)))))))-))))))))).)))	GCACUGGUGAUUACAUCGUUGG&ACAACGAU-UAAUUACUAUUGC	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s766_TRINITY_DN4007_c1_g2_164_TPlot.pdf
TRINITY_DN4007_c1_g2:167	si_s764	TRINITY_DN4007_c1_g2	155	176	167	-25.70	-16.90	0.657587548638132	10	4-10,173-167;11-19,165-157	1-3,176-174[UP5];x-x,166-166[BULt];20-21,156-155[UP3]	..(((((((((.(((((((...&...)))))))-)))))))))..	ACUGGUGAUUACAUCGUUGGAU&CAACAACGAU-UAAUUACUAUU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN4007_c1_g2_167_TPlot.pdf
TRINITY_DN40081_c0_g1:67	si_s553	TRINITY_DN40081_c0_g1	56	76	67	-23.50	-16.00	0.680851063829787	8	3-13,74-64;15-20,62-57	1-2,76-75[UP5];14-14,63-63[SIL];21-21,56-56[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	ACGGAAGCAUUAGUUCUGUGG&AAAUAGAAUUAAUAUUUUCGG	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN40081_c0_g1_67_TPlot.pdf
TRINITY_DN4008_c0_g1:1799	si_a24	TRINITY_DN4008_c0_g1	1788	1808	1799	-24.20	-16.50	0.681818181818182	7.5	2-17,1807-1792	1-1,1808-1808[UP5];18-21,1791-1788[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAAUGGAACUGAAGAUAAAA&AUUUAUUUUUAGUUCUAAGAC	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN4008_c0_g1_1799_TPlot.pdf
TRINITY_DN4008_c0_g1:1803	si_a20	TRINITY_DN4008_c0_g1	1792	1812	1803	-26.70	-24.30	0.910112359550562	4	1-4,1812-1809;6-21,1807-1792	5-5,1808-1808[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	UGGAACUGAAGAUAAAAAGGC&GCCUAUUUAUUUUUAGUUCUA	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4008_c0_g1_1803_TPlot.pdf
TRINITY_DN4008_c0_g1:1805	si_a18	TRINITY_DN4008_c0_g1	1794	1814	1805	-26.30	-22.10	0.840304182509506	6	3-6,1812-1809;8-21,1807-1794	1-2,1814-1813[UP5];7-7,1808-1808[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAACUGAAGAUAAAAAGGCGG&AAGCCUAUUUAUUUUUAGUUC	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN4008_c0_g1_1805_TPlot.pdf
TRINITY_DN4009_c0_g1:419	si_a410	TRINITY_DN4009_c0_g1	408	428	419	-17.80	-13.40	0.752808988764045	9.5	1-15,428-414	16-21,413-408[UP3]	......(((((((((((((((&)))))))))))))))......	AUCAGGUGAAUGUGAGCAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4009_c0_g1_419_TPlot.pdf
TRINITY_DN400_c0_g1:2437	si_a17	TRINITY_DN400_c0_g1	2426	2447	2437	-24.30	-16.50	0.679012345679012	13	3-9,2445-2439;11-20,2436-2427	1-2,2447-2446[UP5];10-10,2438-2437[AILt];21-21,2426-2426[UP3]	.((((((((((..(((((((..&..)))))))-.)))))))))).	UGCUGAGAGUAUCGUGGGUUGA&AAAGCCUAU-UUAUUUUUAGUU	3	0.999996667958706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN400_c0_g1_2437_TPlot.pdf
TRINITY_DN400_c0_g1:2439	si_a16	TRINITY_DN400_c0_g1	2427	2449	2439	-26.30	-17.10	0.650190114068441	13	1-2,2449-2448;4-10,2445-2439;12-21,2436-2427	3-3,2447-2446[AILt];11-11,2438-2437[AILt]	((((((((((..(((((((..((&))-.)))))))-.))))))))))	GCUGAGAGUAUCGUGGGUUGAUC&GA-AAGCCUAU-UUAUUUUUAGU	2	0.993284599651729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN400_c0_g1_2439_TPlot.pdf
TRINITY_DN400_c0_g1:2440	si_a317	TRINITY_DN400_c0_g1	2429	2449	2440	-24.30	-18.20	0.748971193415638	7.5	1-4,2449-2446;6-14,2444-2436;16-21,2434-2429	5-5,2445-2445[SIL];15-15,2435-2435[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	UGAGAGUAUCGUGGGUUGAUC&GAUUUAUCCAUGAUUUUUUUA	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN400_c0_g1_2440_TPlot.pdf
TRINITY_DN40105_c0_g1:1067	si_s78	TRINITY_DN40105_c0_g1	1056	1076	1067	-26.20	-19.80	0.755725190839695	10.5	4-14,1073-1063;16-20,1061-1057	1-3,1076-1074[UP5];15-15,1062-1062[SIL];21-21,1056-1056[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	CGAAGAUGGGAGAGGAAGCAA&UUUUUUUCUUUCCUUUCUUCU	4	0.999999999939736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN40105_c0_g1_1067_TPlot.pdf
TRINITY_DN4010_c0_g1:2511	si_a640	TRINITY_DN4010_c0_g1	2501	2524	2511	-24.10	-15.80	0.655601659751037	11	1-8,2524-2517;9-14,2512-2507;16-21,2506-2501	x-x,2516-2513[BULt];15-15,x-x[BULq]	((((((-((((((....((((((((&))))))))----)))))).))))))	GGUAUA-UGCUCAAUCAAAGAAAUC&GAUUUUUU----UGAGUAAUAUAUC	4	0.999996737848876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN4010_c0_g1_2511_TPlot.pdf
TRINITY_DN40119_c0_g1:108	si_a410	TRINITY_DN40119_c0_g1	97	117	108	-17.80	-11.90	0.668539325842697	9.5	2-14,116-104	1-1,117-117[UP5];15-21,103-97[UP3]	.......(((((((((((((.&.))))))))))))).......	AGAGGAAGAAUAUAGACAAAG&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN40119_c0_g1_108_TPlot.pdf
TRINITY_DN4011_c0_g1:2105	si_s190	TRINITY_DN4011_c0_g1	2094	2115	2105	-28.00	-18.20	0.65	8.5	1-9,2115-2107;11-21,2104-2094	10-10,2106-2105[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	GCAUUUUAAGAAGAAUUGUUGC&GUAACGAUU-AUUUUGGAAUGU	2	0.962588730329404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN4011_c0_g1_2105_TPlot.pdf
TRINITY_DN4011_c0_g1:2708	si_s603	TRINITY_DN4011_c0_g1	2697	2717	2708	-27.20	-17.80	0.654411764705882	7.5	2-3,2716-2715;5-18,2713-2700	1-1,2717-2717[UP5];4-4,2714-2714[SIL];19-21,2699-2697[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	AUCUAGAAAAGAUUCGUAUGA&CCAAGCGAAUCUUUUUUAAAU	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN4011_c0_g1_2708_TPlot.pdf
TRINITY_DN4012_c0_g1:246	si_s97	TRINITY_DN4012_c0_g1	233	255	246	-36.30	-24.98	0.688154269972452	9	1-12,255-244;15-19,239-235	13-14,243-240[AILt];20-21,234-233[UP3]	..(((((....((((((((((((&))))))))))))--..)))))..	CGCCAAUAAAAGAAGCGAAGGAG&CUUCUUCGCUUC--GGAUUGGAA	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN4012_c0_g1_246_TPlot.pdf
TRINITY_DN4012_c0_g1:480	si_a410	TRINITY_DN4012_c0_g1	469	489	480	-17.80	-12.50	0.702247191011236	10	1-15,489-475	16-21,474-469[UP3]	......(((((((((((((((&)))))))))))))))......	ACAAGCUGGGUGUAAACAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999800174655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4012_c0_g1_480_TPlot.pdf
TRINITY_DN4012_c0_g1:481	si_a409	TRINITY_DN4012_c0_g1	470	490	481	-19.50	-13.80	0.707692307692308	9	1-16,490-475	17-21,474-470[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAAGCUGGGUGUAAACAAGAU&GUUUUGUUUAUAUUUAAAUAA	2	0.999344938649954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4012_c0_g1_481_TPlot.pdf
TRINITY_DN4012_c0_g1:482	si_a408	TRINITY_DN4012_c0_g1	471	491	482	-20.10	-14.10	0.701492537313433	9.5	2-17,490-475	1-1,491-491[UP5];18-21,474-471[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGCUGGGUGUAAACAAGAUG&UGUUUUGUUUAUAUUUAAAUA	2	0.999665500007058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4012_c0_g1_482_TPlot.pdf
TRINITY_DN4012_c0_g1:483	si_a407	TRINITY_DN4012_c0_g1	472	492	483	-19.80	-14.10	0.712121212121212	10	3-18,490-475	1-2,492-491[UP5];19-21,474-472[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGCUGGGUGUAAACAAGAUGG&UUGUUUUGUUUAUAUUUAAAU	2	0.999956012099885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4012_c0_g1_483_TPlot.pdf
TRINITY_DN4012_c0_g1:484	si_a406	TRINITY_DN4012_c0_g1	473	493	484	-19.80	-14.10	0.712121212121212	11	4-19,490-475	1-3,493-491[UP5];20-21,474-473[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCUGGGUGUAAACAAGAUGGA&AUUGUUUUGUUUAUAUUUAAA	2	0.999996067160338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4012_c0_g1_484_TPlot.pdf
TRINITY_DN4012_c0_g1:485	si_a405	TRINITY_DN4012_c0_g1	474	494	485	-19.80	-14.10	0.712121212121212	12	5-20,490-475	1-4,494-491[UP5];21-21,474-474[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUGGGUGUAAACAAGAUGGAU&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999799254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4012_c0_g1_485_TPlot.pdf
TRINITY_DN40148_c0_g1:68	si_a471	TRINITY_DN40148_c0_g1	57	75	68	-21.10	-14.40	0.682464454976303	8.5	2-7,74-69;10-21,68-57	1-1,75-75[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	AUAUGGCGAUGA--GCAUAUG&AAUAUGUAAUUAUUGUUAUAU	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN40148_c0_g1_68_TPlot.pdf
TRINITY_DN4014_c0_g1:591	si_a463	TRINITY_DN4014_c0_g1	580	600	591	-19.70	-13.40	0.680203045685279	10.5	3-16,598-585	1-2,600-599[UP5];17-21,584-580[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUUAUGCAUGUUGUAUAUUU&UUAUAUAUAAUAUGUAAUUAU	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN4014_c0_g1_591_TPlot.pdf
TRINITY_DN4014_c0_g1:592	si_a462	TRINITY_DN4014_c0_g1	581	601	592	-21.20	-14.50	0.683962264150943	10.5	1-1,601-601;4-17,598-585	2-3,600-599[SIL];18-21,584-581[UP3]	....((((((((((((((..(&)..))))))))))))))....	UUUAUGCAUGUUGUAUAUUUC&GUUAUAUAUAAUAUGUAAUUA	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN4014_c0_g1_592_TPlot.pdf
TRINITY_DN4014_c0_g1:593	si_a461	TRINITY_DN4014_c0_g1	582	602	593	-21.50	-14.60	0.67906976744186	10	2-2,601-601;5-18,598-585	1-1,602-602[UP5];3-4,600-599[SIL];19-21,584-582[UP3]	...((((((((((((((..(.&.)..))))))))))))))...	UUAUGCAUGUUGUAUAUUUCG&UGUUAUAUAUAAUAUGUAAUU	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN4014_c0_g1_593_TPlot.pdf
TRINITY_DN4015_c0_g1:2055	si_a142	TRINITY_DN4015_c0_g1	2044	2065	2055	-23.50	-16.90	0.719148936170213	9.5	2-8,2064-2058;9-18,2056-2047	1-1,2065-2065[UP5];x-x,2057-2057[BULt];19-21,2046-2044[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	UUUAGGCAGCAGCAGAUUGAUG&AAUUAAUC-GUUGUUGUUUUAA	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN4015_c0_g1_2055_TPlot.pdf
TRINITY_DN40176_c0_g1:1871	si_a544	TRINITY_DN40176_c0_g1	1854	1880	1871	-28.90	-18.90	0.653979238754325	15.5	1-4,1880-1877;6-12,1875-1869;13-20,1862-1855	5-5,1876-1876[SIL];x-x,1868-1863[BULt];21-21,1854-1854[UP3]	.((((((((......(((((((.((((&)))).)))))))------)))))))).	AAGAGAAAUCUGGACAGAUUGAUCCGA&UCGGUUCAAUCU------AUUUCUUUA	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN40176_c0_g1_1871_TPlot.pdf
TRINITY_DN40176_c0_g1:2796	si_a144	TRINITY_DN40176_c0_g1	2785	2805	2796	-27.40	-18.30	0.667883211678832	6	1-4,2805-2802;6-19,2800-2787	5-5,2801-2801[SIL];20-21,2786-2785[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	CAUUGGAACAACAACGUUUGA&UUAAUCGUUGUUGUUUUAAGG	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN40176_c0_g1_2796_TPlot.pdf
TRINITY_DN40176_c0_g1:2797	si_a143	TRINITY_DN40176_c0_g1	2786	2806	2797	-25.10	-18.30	0.729083665338645	6	2-5,2805-2802;7-20,2800-2787	1-1,2806-2806[UP5];6-6,2801-2801[SIL];21-21,2786-2786[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	AUUGGAACAACAACGUUUGAC&AUUAAUCGUUGUUGUUUUAAG	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN40176_c0_g1_2797_TPlot.pdf
TRINITY_DN40176_c0_g1:2798	si_a142	TRINITY_DN40176_c0_g1	2787	2807	2798	-23.50	-18.10	0.770212765957447	7	3-6,2805-2802;8-21,2800-2787	1-2,2807-2806[UP5];7-7,2801-2801[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UUGGAACAACAACGUUUGACA&AAUUAAUCGUUGUUGUUUUAA	0	0.0507004586878006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN40176_c0_g1_2798_TPlot.pdf
TRINITY_DN40176_c0_g1:2799	si_a141	TRINITY_DN40176_c0_g1	2788	2808	2799	-23.80	-17.30	0.726890756302521	9	4-7,2805-2802;9-21,2800-2788	1-3,2808-2806[UP5];8-8,2801-2801[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UGGAACAACAACGUUUGACAC&UAAUUAAUCGUUGUUGUUUUA	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN40176_c0_g1_2799_TPlot.pdf
TRINITY_DN40176_c0_g1:280	si_a179	TRINITY_DN40176_c0_g1	265	289	280	-32.90	-22.54	0.685106382978723	16	1-10,289-280;14-21,272-265	11-13,279-273[AILt]	((((((((.......((((((((((&))))))))))----...))))))))	GGGAGGGACGGAACCUAUCUGGGCG&CGUCUAGAUA----AUAUCUUUCCC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN40176_c0_g1_280_TPlot.pdf
TRINITY_DN40176_c0_g1:363	si_a472	TRINITY_DN40176_c0_g1	352	372	363	-21.50	-14.50	0.674418604651163	11	4-17,369-356	1-3,372-370[UP5];18-21,355-352[UP3]	....((((((((((((((...&...))))))))))))))....	AAUCUAGCGAUAAUUGCAGCA&AUAUGUAAUUAUUGUUAUAUA	3	0.999948760723328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN40176_c0_g1_363_TPlot.pdf
TRINITY_DN40176_c0_g1:364	si_a471	TRINITY_DN40176_c0_g1	353	373	364	-21.10	-14.50	0.687203791469194	12	5-18,369-356	1-4,373-370[UP5];19-21,355-353[UP3]	...((((((((((((((....&....))))))))))))))...	AUCUAGCGAUAAUUGCAGCAU&AAUAUGUAAUUAUUGUUAUAU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN40176_c0_g1_364_TPlot.pdf
TRINITY_DN40179_c0_g1:299	si_a865	TRINITY_DN40179_c0_g1	282	308	299	-24.00	-16.50	0.6875	9	1-13,308-296;14-21,289-282	x-x,295-290[BULt]	((((((((......(((((((((((((&)))))))))))))------))))))))	GAUUAGGUUCAUCCCUUUAGUAAUUGG&CCAAUUAUUAAAG------AUUUAGUU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN40179_c0_g1_299_TPlot.pdf
TRINITY_DN40179_c0_g1:304	si_a860	TRINITY_DN40179_c0_g1	293	313	304	-24.30	-17.60	0.724279835390947	9.5	4-18,310-296	1-3,313-311[UP5];19-21,295-293[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCCCUUUAGUAAUUGGGUAAA&GAAAUCCAAUUAUUAAAGAUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN40179_c0_g1_304_TPlot.pdf
TRINITY_DN40179_c0_g1:378	si_s84	TRINITY_DN40179_c0_g1	364	388	378	-32.30	-21.00	0.65015479876161	12	2-6,387-383;7-12,381-376;13-21,372-364	1-1,388-388[UP5];x-x,382-382[BULt];x-x,375-373[BULt]	(((((((((...((((((.(((((.&.)))))-))))))---)))))))))	CGAAGAAGACAAAGAAAGAGGGGGU&UCUUUC-CUUUCU---UCUUCUUCG	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN40179_c0_g1_378_TPlot.pdf
TRINITY_DN4018_c0_g2:1053	si_s875	TRINITY_DN4018_c0_g2	1042	1062	1053	-26.50	-17.70	0.667924528301887	9	2-13,1061-1050	1-1,1062-1062[UP5];14-21,1049-1042[UP3]	........((((((((((((.&.))))))))))))........	ACAAAAUAUAGUUCUAAGACG&GGUCUUAGAACUAAAAAUAAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s875_TRINITY_DN4018_c0_g2_1053_TPlot.pdf
TRINITY_DN4018_c0_g2:1055	si_s873	TRINITY_DN4018_c0_g2	1044	1065	1055	-30.30	-19.80	0.653465346534653	9	1-3,1065-1063;4-15,1061-1050	x-x,1062-1062[BULt];16-21,1049-1044[UP3]	......((((((((((((.(((&)))-))))))))))))......	AAAAUAUAGUUCUAAGACGUGG&CCG-GUCUUAGAACUAAAAAUA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s873_TRINITY_DN4018_c0_g2_1055_TPlot.pdf
TRINITY_DN4018_c0_g4:2092	si_a469	TRINITY_DN4018_c0_g4	2081	2105	2092	-21.10	-14.60	0.691943127962085	10	1-9,2105-2097;10-19,2092-2083	x-x,2096-2093[BULt];20-21,2082-2081[UP3]	..((((((((((....(((((((((&)))))))))----))))))))))..	CAAACAAUAAUUUACAACAUAUUAU&AUAAUAUGU----AAUUAUUGUUAU	4	0.999175696282049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN4018_c0_g4_2092_TPlot.pdf
TRINITY_DN4018_c0_g4:2100	si_a465	TRINITY_DN4018_c0_g4	2085	2109	2100	-20.90	-15.80	0.755980861244019	6	2-13,2108-2097;14-21,2092-2085	1-1,2109-2109[UP5];x-x,2096-2093[BULt]	((((((((....((((((((((((.&.))))))))))))----))))))))	CAAUAAUUUACAACAUAUUAUGUAA&AUAUAUAAUAUGU----AAUUAUUG	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN4018_c0_g4_2100_TPlot.pdf
TRINITY_DN4018_c0_g4:2855	si_a410	TRINITY_DN4018_c0_g4	2843	2864	2855	-17.80	-12.70	0.713483146067416	4.5	1-10,2864-2855;11-20,2853-2844	x-x,2854-2854[BULt];21-21,2843-2843[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	GUUAUUUAGAUAAUAAAUAAAA&UUUUGUUUAU-AUUUAAAUAAA	2	0.999320017310017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4018_c0_g4_2855_TPlot.pdf
TRINITY_DN4018_c0_g4:3719	si_s71	TRINITY_DN4018_c0_g4	3701	3728	3719	-25.70	-17.30	0.673151750972763	19	2-11,3727-3718;12-21,3710-3701	1-1,3728-3728[UP5];x-x,3717-3711[BULt]	((((((((((.......((((((((((.&.))))))))))-------))))))))))	AGGAAGGGAAUUAAUUCGGAGAUAGAAA&CUUCUAUUUUU-------UUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4018_c0_g4_3719_TPlot.pdf
TRINITY_DN4018_c0_g4:3973	si_s440	TRINITY_DN4018_c0_g4	3962	3982	3973	-21.60	-14.50	0.671296296296296	9	3-17,3980-3966	1-2,3982-3981[UP5];18-21,3965-3962[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUAAUAUAUGUAAUAUGUGUU&AUUACAUAUUAUAUAUAACAA	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN4018_c0_g4_3973_TPlot.pdf
TRINITY_DN4018_c0_g4:3974	si_s439	TRINITY_DN4018_c0_g4	3963	3983	3974	-21.50	-14.50	0.674418604651163	9.5	4-18,3980-3966	1-3,3983-3981[UP5];19-21,3965-3963[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAAUAUAUGUAAUAUGUGUUG&AAUUACAUAUUAUAUAUAACA	2	0.968571161233685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN4018_c0_g4_3974_TPlot.pdf
TRINITY_DN4018_c0_g4:3975	si_s438	TRINITY_DN4018_c0_g4	3964	3984	3975	-21.20	-14.50	0.683962264150943	10.5	5-19,3980-3966	1-4,3984-3981[UP5];20-21,3965-3964[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAUAUAUGUAAUAUGUGUUGA&UAAUUACAUAUUAUAUAUAAC	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN4018_c0_g4_3975_TPlot.pdf
TRINITY_DN4019_c0_g1:137	si_a876	TRINITY_DN4019_c0_g1	126	146	137	-27.30	-18.20	0.666666666666667	9	1-13,146-134	14-21,133-126[UP3]	........(((((((((((((&)))))))))))))........	UUUUCUGCUGCAACUAAGUCU&AGAUUUAGUUGCAAUCAAUAU	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN4019_c0_g1_137_TPlot.pdf
TRINITY_DN4019_c0_g1:138	si_a875	TRINITY_DN4019_c0_g1	127	147	138	-27.10	-18.50	0.682656826568266	9	2-14,146-134	1-1,147-147[UP5];15-21,133-127[UP3]	.......(((((((((((((.&.))))))))))))).......	UUUCUGCUGCAACUAAGUCUG&AAGAUUUAGUUGCAAUCAAUA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN4019_c0_g1_138_TPlot.pdf
TRINITY_DN4019_c0_g1:139	si_a874	TRINITY_DN4019_c0_g1	128	148	139	-26.70	-18.50	0.692883895131086	10	3-15,146-134	1-2,148-147[UP5];16-21,133-128[UP3]	......(((((((((((((..&..)))))))))))))......	UUCUGCUGCAACUAAGUCUGA&AAAGAUUUAGUUGCAAUCAAU	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN4019_c0_g1_139_TPlot.pdf
TRINITY_DN4019_c0_g1:140	si_a873	TRINITY_DN4019_c0_g1	129	149	140	-27.00	-18.50	0.685185185185185	11	4-16,146-134	1-3,149-147[UP5];17-21,133-129[UP3]	.....(((((((((((((...&...))))))))))))).....	UCUGCUGCAACUAAGUCUGAU&UAAAGAUUUAGUUGCAAUCAA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN4019_c0_g1_140_TPlot.pdf
TRINITY_DN4019_c0_g1:141	si_a872	TRINITY_DN4019_c0_g1	130	150	141	-27.00	-18.50	0.685185185185185	12	5-17,146-134	1-4,150-147[UP5];18-21,133-130[UP3]	....(((((((((((((....&....)))))))))))))....	CUGCUGCAACUAAGUCUGAUG&UUAAAGAUUUAGUUGCAAUCA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN4019_c0_g1_141_TPlot.pdf
TRINITY_DN4019_c0_g1:142	si_a871	TRINITY_DN4019_c0_g1	131	152	142	-26.40	-19.00	0.71969696969697	9	1-4,152-149;6-18,146-134	5-5,148-147[AILt];19-21,133-131[UP3]	...(((((((((((((..((((&))))-.)))))))))))))...	UGCUGCAACUAAGUCUGAUGAU&AUUA-AAGAUUUAGUUGCAAUC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN4019_c0_g1_142_TPlot.pdf
TRINITY_DN4019_c0_g1:143	si_a870	TRINITY_DN4019_c0_g1	132	153	143	-24.80	-19.80	0.798387096774194	8.5	1-5,153-149;7-19,146-134	6-6,148-147[AILt];20-21,133-132[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	GCUGCAACUAAGUCUGAUGAUG&UAUUA-AAGAUUUAGUUGCAAU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN4019_c0_g1_143_TPlot.pdf
TRINITY_DN4019_c0_g1:144	si_a869	TRINITY_DN4019_c0_g1	133	154	144	-24.80	-20.20	0.814516129032258	9	2-6,153-149;8-20,146-134	1-1,154-154[UP5];7-7,148-147[AILt];21-21,133-133[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	CUGCAACUAAGUCUGAUGAUGG&UUAUUA-AAGAUUUAGUUGCAA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN4019_c0_g1_144_TPlot.pdf
TRINITY_DN4019_c0_g1:145	si_a868	TRINITY_DN4019_c0_g1	134	155	145	-24.80	-19.90	0.80241935483871	10	3-7,153-149;9-21,146-134	1-2,155-154[UP5];8-8,148-147[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	UGCAACUAAGUCUGAUGAUGGA&AUUAUUA-AAGAUUUAGUUGCA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN4019_c0_g1_145_TPlot.pdf
TRINITY_DN4019_c0_g1:149	si_a865	TRINITY_DN4019_c0_g1	137	158	149	-24.00	-16.80	0.7	9.5	1-3,158-156;5-10,154-149;12-21,146-137	4-4,155-155[SIL];11-11,148-147[AILt]	((((((((((..((((((.(((&))).))))))-.))))))))))	AACUAAGUCUGAUGAUGGAUGG&CCAAUUAUUA-AAGAUUUAGUU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN4019_c0_g1_149_TPlot.pdf
TRINITY_DN4019_c0_g1:150	si_a864	TRINITY_DN4019_c0_g1	138	159	150	-25.00	-17.60	0.704	9.5	1-4,159-156;6-11,154-149;13-21,146-138	5-5,155-155[SIL];12-12,148-147[AILt]	(((((((((..((((((.((((&)))).))))))-.)))))))))	ACUAAGUCUGAUGAUGGAUGGA&UCCAAUUAUUA-AAGAUUUAGU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a864_TRINITY_DN4019_c0_g1_150_TPlot.pdf
TRINITY_DN4019_c0_g1:151	si_a863	TRINITY_DN4019_c0_g1	139	160	151	-24.40	-16.30	0.668032786885246	9.5	2-5,159-156;7-12,154-149;14-21,146-139	1-1,160-160[UP5];6-6,155-155[SIL];13-13,148-147[AILt]	((((((((..((((((.((((.&.)))).))))))-.))))))))	CUAAGUCUGAUGAUGGAUGGAA&AUCCAAUUAUUA-AAGAUUUAG	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN4019_c0_g1_151_TPlot.pdf
TRINITY_DN4019_c0_g1:161	si_s518	TRINITY_DN4019_c0_g1	148	170	161	-24.60	-16.16	0.656910569105691	8	1-13,170-158;17-21,152-148	14-16,157-153[AILt]	(((((.....(((((((((((((&)))))))))))))--...)))))	AUGAUGGAUGGAAUUGGGAAUGU&AUAUUCUUAAUUC--GAAAUCAU	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN4019_c0_g1_161_TPlot.pdf
TRINITY_DN40203_c0_g1:420	si_a71	TRINITY_DN40203_c0_g1	409	429	420	-23.30	-15.80	0.678111587982833	8.5	3-18,427-412	1-2,429-428[UP5];19-21,411-409[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAUUGAGAAAUAAUUUGGAUU&CUUUCAAAUUGUUUUUCAUUA	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN40203_c0_g1_420_TPlot.pdf
TRINITY_DN4021_c0_g1:1051	si_s12	TRINITY_DN4021_c0_g1	1040	1059	1051	-22.80	-15.40	0.675438596491228	11	1-6,1059-1054;9-18,1052-1043	7-8,1053-1053[AILq];19-21,1042-1040[UP3]	...((((((((((.-((((((&))))))..))))))))))...	CGACAAUAUGGUGG-GAUGAG&CUUAUUAUUACUAUAUUGAUU	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN4021_c0_g1_1051_TPlot.pdf
TRINITY_DN4021_c0_g1:1053	si_s10	TRINITY_DN4021_c0_g1	1042	1061	1053	-23.80	-15.60	0.65546218487395	11.5	3-8,1059-1054;11-20,1052-1043	1-2,1061-1060[UP5];9-10,1053-1053[AILq];21-21,1042-1042[UP3]	.((((((((((.-((((((..&..))))))..)))))))))).	ACAAUAUGGUGG-GAUGAGGA&UACUUAUUAUUACUAUAUUGA	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN4021_c0_g1_1053_TPlot.pdf
TRINITY_DN4021_c0_g1:7559	si_a318	TRINITY_DN4021_c0_g1	7547	7570	7559	-22.50	-14.80	0.657777777777778	6.5	1-9,7570-7562;10-13,7559-7556;14-21,7554-7547	x-x,7561-7560[BULt];x-x,7555-7555[BULt]	((((((((.((((..(((((((((&)))))))))--))))-))))))))	AUAAAGAACAUCAUCUGGGUAAAU&AUUUAUCCA--UGAU-UUUUUUAU	2	0.999999999732561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4021_c0_g1_7559_TPlot.pdf
TRINITY_DN4021_c0_g1:973	si_a312	TRINITY_DN4021_c0_g1	962	986	973	-31.20	-23.28	0.746153846153846	14	1-8,986-979;10-18,973-965	9-9,978-974[AILt];19-21,964-962[UP3]	...(((((((((.....((((((((&))))))))----.)))))))))...	CUUUCAUGGAUAUAAUUGUCCAAGC&GCUUGGAU----UUAUCCAUGAUUU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN4021_c0_g1_973_TPlot.pdf
TRINITY_DN4021_c0_g1:974	si_a311	TRINITY_DN4021_c0_g1	963	987	974	-32.70	-23.38	0.714984709480122	14	2-9,986-979;11-19,973-965	1-1,987-987[UP5];10-10,978-974[AILt];20-21,964-963[UP3]	..(((((((((.....((((((((.&.))))))))----.)))))))))..	UUUCAUGGAUAUAAUUGUCCAAGCA&CGCUUGGAU----UUAUCCAUGAUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN4021_c0_g1_974_TPlot.pdf
TRINITY_DN4023_c0_g1:1278	si_a128	TRINITY_DN4023_c0_g1	1264	1287	1278	-23.20	-16.10	0.693965517241379	12.5	1-11,1287-1277;12-18,1273-1267	x-x,1276-1274[BULt];19-21,1266-1264[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	UCCAAUUGCUGAGGUUGCUGUGAA&UUUAUAGCAAU---AGUAAUUAAU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN4023_c0_g1_1278_TPlot.pdf
TRINITY_DN4023_c0_g1:1279	si_a127	TRINITY_DN4023_c0_g1	1265	1288	1279	-23.10	-16.20	0.701298701298701	12.5	2-12,1287-1277;13-19,1273-1267	1-1,1288-1288[UP5];x-x,1276-1274[BULt];20-21,1266-1265[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	CCAAUUGCUGAGGUUGCUGUGAAC&UUUUAUAGCAAU---AGUAAUUAA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN4023_c0_g1_1279_TPlot.pdf
TRINITY_DN4026_c0_g1:226	si_a157	TRINITY_DN4026_c0_g1	215	236	226	-29.00	-19.50	0.672413793103448	8.5	1-6,236-231;9-21,227-215	7-8,230-228[AILt]	(((((((((((((...((((((&))))))-..)))))))))))))	GUGGAUAGAUUGAAGAUUGAGA&UUUUAA-GGUCAAUCUAUUCAC	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a157_TRINITY_DN4026_c0_g1_226_TPlot.pdf
TRINITY_DN40274_c0_g1:368	si_a787	TRINITY_DN40274_c0_g1	358	377	368	-26.30	-18.70	0.711026615969582	5.5	1-13,377-365;15-19,364-360	14-14,x-x[BULq];20-21,359-358[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AAGAGAA-AGAGAAGUAGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999995070517503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN40274_c0_g1_368_TPlot.pdf
TRINITY_DN40274_c0_g1:732	si_a32	TRINITY_DN40274_c0_g1	717	741	732	-35.90	-28.10	0.782729805013928	9.5	2-14,740-728;15-20,723-718	1-1,741-741[UP5];x-x,727-724[BULt];21-21,717-717[UP3]	.((((((....(((((((((((((.&.)))))))))))))----)))))).	CCCUGCCCAAGGGUCUUGGGACUGG&UUAGUUCUAAGACC----GGUAGGU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN40274_c0_g1_732_TPlot.pdf
TRINITY_DN40279_c0_g1:396	si_s69	TRINITY_DN40279_c0_g1	385	405	396	-23.40	-18.20	0.777777777777778	9	3-20,403-386	1-2,405-404[UP5];21-21,385-385[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAAAGGAGAGAAAUGGGGGGC&AACUUCUAUUUUUUUUCUUUC	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN40279_c0_g1_396_TPlot.pdf
TRINITY_DN4028_c0_g1:1084	si_a145	TRINITY_DN4028_c0_g1	1072	1092	1084	-28.10	-18.60	0.661921708185053	5.5	1-7,1092-1086;9-16,1085-1078;18-20,1075-1073	8-8,x-x[BULq];17-17,1077-1076[AILt];21-21,1072-1072[UP3]	.(((..((((((((-(((((((&))))))).))))))))-.))).	CCCUGAAGAACAAC-ACGAUUA&UAAUCGUUGUUGUUUU-AAGGU	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN4028_c0_g1_1084_TPlot.pdf
TRINITY_DN4028_c0_g1:1085	si_a144	TRINITY_DN4028_c0_g1	1073	1093	1085	-27.40	-18.50	0.675182481751825	5.5	2-8,1092-1086;10-17,1085-1078;19-21,1075-1073	1-1,1093-1093[UP5];9-9,x-x[BULq];18-18,1077-1076[AILt]	(((..((((((((-(((((((.&.))))))).))))))))-.)))	CCUGAAGAACAAC-ACGAUUAU&UUAAUCGUUGUUGUUUU-AAGG	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN4028_c0_g1_1085_TPlot.pdf
TRINITY_DN4028_c0_g1:1086	si_a142	TRINITY_DN4028_c0_g1	1076	1095	1086	-23.50	-15.50	0.659574468085106	9.5	4-10,1092-1086;12-19,1085-1078	1-3,1095-1093[UP5];11-11,x-x[BULq];20-21,1077-1076[UP3]	..((((((((-(((((((...&...))))))).))))))))..	GAAGAACAAC-ACGAUUAUGU&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999360861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN4028_c0_g1_1086_TPlot.pdf
TRINITY_DN4028_c0_g1:1087	si_a141	TRINITY_DN4028_c0_g1	1077	1096	1087	-23.80	-15.50	0.651260504201681	10.5	5-11,1092-1086;13-20,1085-1078	1-4,1096-1093[UP5];12-12,x-x[BULq];21-21,1077-1077[UP3]	.((((((((-(((((((....&....))))))).)))))))).	AAGAACAAC-ACGAUUAUGUU&UAAUUAAUCGUUGUUGUUUUA	2	0.999999999778106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN4028_c0_g1_1087_TPlot.pdf
TRINITY_DN4029_c0_g1:1480	si_a782	TRINITY_DN4029_c0_g1	1468	1489	1480	-26.40	-18.70	0.708333333333333	5.5	1-10,1489-1480;12-14,1478-1476;15-20,1474-1469	11-11,1479-1479[SIL];x-x,1475-1475[BULt];21-21,1468-1468[UP3]	.((((((.(((.((((((((((&)))))))))).)))-)))))).	UAUGGAAUAAAAAGAGGAGUUG&CAACUCUUCUAUUU-UUCUAUU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN4029_c0_g1_1480_TPlot.pdf
TRINITY_DN4029_c0_g1:1482	si_a780	TRINITY_DN4029_c0_g1	1470	1491	1482	-27.30	-18.40	0.673992673992674	5	1-12,1491-1480;14-16,1478-1476;17-21,1474-1470	13-13,1479-1479[SIL];x-x,1475-1475[BULt]	(((((.(((.((((((((((((&)))))))))))).)))-)))))	UGGAAUAAAAAGAGGAGUUGGG&UUCAACUCUUCUAUUU-UUCUA	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN4029_c0_g1_1482_TPlot.pdf
TRINITY_DN4030_c0_g1:1126	si_a455	TRINITY_DN4030_c0_g1	1115	1135	1126	-21.10	-13.80	0.654028436018957	10	2-14,1134-1122	1-1,1135-1135[UP5];15-21,1121-1115[UP3]	.......(((((((((((((.&.))))))))))))).......	CAACUAAAUAUGGCAACAAUG&AAUUGUUGUUAUAUAUAAUAU	3	0.999999999680214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN4030_c0_g1_1126_TPlot.pdf
TRINITY_DN4030_c0_g1:1128	si_a453	TRINITY_DN4030_c0_g1	1117	1137	1128	-21.10	-13.80	0.654028436018957	12	4-16,1134-1122	1-3,1137-1135[UP5];17-21,1121-1117[UP3]	.....(((((((((((((...&...))))))))))))).....	ACUAAAUAUGGCAACAAUGGU&AUAAUUGUUGUUAUAUAUAAU	3	0.999999997627277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN4030_c0_g1_1128_TPlot.pdf
TRINITY_DN4030_c0_g1:1270	si_a476	TRINITY_DN4030_c0_g1	1259	1279	1270	-22.90	-15.10	0.65938864628821	10.5	1-14,1279-1266	15-21,1265-1259[UP3]	.......((((((((((((((&)))))))))))))).......	AAAUAUGGUAACAAUGGUUGC&GUAAUUAUUGUUAUAUAGAAU	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN4030_c0_g1_1270_TPlot.pdf
TRINITY_DN4030_c0_g1:1271	si_a475	TRINITY_DN4030_c0_g1	1260	1280	1271	-23.50	-16.10	0.685106382978724	9.5	1-15,1280-1266	16-21,1265-1260[UP3]	......(((((((((((((((&)))))))))))))))......	AAUAUGGUAACAAUGGUUGCA&UGUAAUUAUUGUUAUAUAGAA	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN4030_c0_g1_1271_TPlot.pdf
TRINITY_DN4030_c0_g1:1272	si_a474	TRINITY_DN4030_c0_g1	1261	1281	1272	-23.60	-16.10	0.682203389830509	9.5	2-16,1280-1266	1-1,1281-1281[UP5];17-21,1265-1261[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAUGGUAACAAUGGUUGCAA&AUGUAAUUAUUGUUAUAUAGA	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN4030_c0_g1_1272_TPlot.pdf
TRINITY_DN4030_c0_g1:1273	si_a473	TRINITY_DN4030_c0_g1	1262	1282	1273	-23.00	-16.10	0.7	10.5	3-17,1280-1266	1-2,1282-1281[UP5];18-21,1265-1262[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAUGGUAACAAUGGUUGCAAC&UAUGUAAUUAUUGUUAUAUAG	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN4030_c0_g1_1273_TPlot.pdf
TRINITY_DN4030_c0_g1:1274	si_a472	TRINITY_DN4030_c0_g1	1263	1283	1274	-21.50	-16.10	0.748837209302326	11.5	4-18,1280-1266	1-3,1283-1281[UP5];19-21,1265-1263[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUGGUAACAAUGGUUGCAACG&AUAUGUAAUUAUUGUUAUAUA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN4030_c0_g1_1274_TPlot.pdf
TRINITY_DN4030_c0_g1:1275	si_a471	TRINITY_DN4030_c0_g1	1264	1284	1275	-21.10	-16.10	0.76303317535545	12.5	5-19,1280-1266	1-4,1284-1281[UP5];20-21,1265-1264[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGGUAACAAUGGUUGCAACGG&AAUAUGUAAUUAUUGUUAUAU	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN4030_c0_g1_1275_TPlot.pdf
TRINITY_DN4030_c0_g1:1276	si_a470	TRINITY_DN4030_c0_g1	1265	1285	1276	-21.30	-16.10	0.755868544600939	13.5	6-20,1280-1266	1-5,1285-1281[UP5];21-21,1265-1265[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUAACAAUGGUUGCAACGGU&UAAUAUGUAAUUAUUGUUAUA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN4030_c0_g1_1276_TPlot.pdf
TRINITY_DN4030_c0_g1:1277	si_a469	TRINITY_DN4030_c0_g1	1266	1286	1277	-21.10	-15.70	0.744075829383886	14	7-21,1280-1266	1-6,1286-1281[UP5]	(((((((((((((((......&......)))))))))))))))	GUAACAAUGGUUGCAACGGUG&AUAAUAUGUAAUUAUUGUUAU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN4030_c0_g1_1277_TPlot.pdf
TRINITY_DN4030_c0_g1:1278	si_a468	TRINITY_DN4030_c0_g1	1267	1287	1278	-21.30	-14.20	0.666666666666667	15	8-21,1280-1267	1-7,1287-1281[UP5]	((((((((((((((.......&.......))))))))))))))	UAACAAUGGUUGCAACGGUGG&UAUAAUAUGUAAUUAUUGUUA	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN4030_c0_g1_1278_TPlot.pdf
TRINITY_DN4030_c0_g1:1431	si_a849	TRINITY_DN4030_c0_g1	1420	1441	1431	-30.70	-22.80	0.742671009771987	8	1-7,1441-1435;8-13,1433-1428;15-19,1426-1422	x-x,1434-1434[BULt];14-14,1427-1427[SIL];20-21,1421-1420[UP3]	..(((((.((((((.(((((((&)))))))-)))))).)))))..	UGUGGAUAUCGAGUCUGGCAGC&GUUGCUA-ACUUGAAAUCCAAU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a849_TRINITY_DN4030_c0_g1_1431_TPlot.pdf
TRINITY_DN4030_c0_g1:1432	si_a848	TRINITY_DN4030_c0_g1	1421	1442	1432	-31.30	-22.80	0.728434504792332	8	2-8,1441-1435;9-14,1433-1428;16-20,1426-1422	1-1,1442-1442[UP5];x-x,1434-1434[BULt];15-15,1427-1427[SIL];21-21,1421-1421[UP3]	.(((((.((((((.(((((((.&.)))))))-)))))).))))).	GUGGAUAUCGAGUCUGGCAGCG&AGUUGCUA-ACUUGAAAUCCAA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN4030_c0_g1_1432_TPlot.pdf
TRINITY_DN4030_c0_g1:1433	si_a847	TRINITY_DN4030_c0_g1	1422	1443	1433	-31.20	-22.60	0.724358974358974	8.5	3-9,1441-1435;10-15,1433-1428;17-21,1426-1422	1-2,1443-1442[UP5];x-x,1434-1434[BULt];16-16,1427-1427[SIL]	(((((.((((((.(((((((..&..)))))))-)))))).)))))	UGGAUAUCGAGUCUGGCAGCGA&AAGUUGCUA-ACUUGAAAUCCA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN4030_c0_g1_1433_TPlot.pdf
TRINITY_DN4030_c0_g1:1435	si_a846	TRINITY_DN4030_c0_g1	1423	1444	1435	-32.50	-21.20	0.652307692307692	10.5	4-10,1441-1435;11-16,1433-1428;18-21,1426-1423	1-3,1444-1442[UP5];x-x,1434-1434[BULt];17-17,1427-1427[SIL]	((((.((((((.(((((((...&...)))))))-)))))).))))	GGAUAUCGAGUCUGGCAGCGAA&GAAGUUGCUA-ACUUGAAAUCC	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a846_TRINITY_DN4030_c0_g1_1435_TPlot.pdf
TRINITY_DN4030_c0_g1:1436	si_s99	TRINITY_DN4030_c0_g1	1425	1446	1436	-34.60	-22.70	0.65606936416185	8.5	1-8,1446-1439;9-15,1437-1431;17-18,1429-1428	x-x,1438-1438[BULt];16-16,1430-1430[SIL];19-21,1427-1425[UP3]	...((.(((((((.((((((((&))))))))-))))))).))...	AUAUCGAGUCUGGCAGCGAAGA&UCUUCGCU-UCGGAUUGGAAAA	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN4030_c0_g1_1436_TPlot.pdf
TRINITY_DN4030_c0_g1:1702	si_a79	TRINITY_DN4030_c0_g1	1691	1711	1702	-22.20	-16.20	0.72972972972973	9.5	2-4,1710-1708;6-19,1706-1693	1-1,1711-1711[UP5];5-5,1707-1707[SIL];20-21,1692-1691[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AGUCUUAGUAGUGGGAUACGG&UUGUUUUUCAUUAUUAAGAAA	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN4030_c0_g1_1702_TPlot.pdf
TRINITY_DN4030_c0_g1:1704	si_a77	TRINITY_DN4030_c0_g1	1693	1713	1704	-22.20	-16.00	0.720720720720721	11	4-6,1710-1708;8-21,1706-1693	1-3,1713-1711[UP5];7-7,1707-1707[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UCUUAGUAGUGGGAUACGGAA&AAUUGUUUUUCAUUAUUAAGA	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN4030_c0_g1_1704_TPlot.pdf
TRINITY_DN4030_c0_g1:2270	si_s442	TRINITY_DN4030_c0_g1	2258	2280	2270	-23.80	-16.30	0.684873949579832	9	1-7,2280-2274;8-15,2272-2265;16-20,2263-2259	x-x,2273-2273[BULt];x-x,2264-2264[BULt];21-21,2258-2258[UP3]	.(((((.((((((((.(((((((&)))))))-))))))))-))))).	AGUUGUGUAUGUGUGCGUGUGUA&UACAUAU-UAUAUAUA-ACAACA	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN4030_c0_g1_2270_TPlot.pdf
TRINITY_DN4030_c0_g1:2271	si_s441	TRINITY_DN4030_c0_g1	2259	2281	2271	-23.20	-16.00	0.689655172413793	8.5	2-8,2280-2274;9-16,2272-2265;17-21,2263-2259	1-1,2281-2281[UP5];x-x,2273-2273[BULt];x-x,2264-2264[BULt]	(((((.((((((((.(((((((.&.)))))))-))))))))-)))))	GUUGUGUAUGUGUGCGUGUGUAU&UUACAUAU-UAUAUAUA-ACAAC	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN4030_c0_g1_2271_TPlot.pdf
TRINITY_DN4030_c0_g1:323	si_a95	TRINITY_DN4030_c0_g1	312	332	323	-28.60	-18.60	0.65034965034965	7	1-17,332-316	18-21,315-312[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUACUUUUUGUUGCCUUUUUU&AGAAAAGGUAACGAAGAUAAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a95_TRINITY_DN4030_c0_g1_323_TPlot.pdf
TRINITY_DN4030_c0_g1:324	si_a94	TRINITY_DN4030_c0_g1	313	333	324	-28.60	-18.90	0.660839160839161	7	2-18,332-316	1-1,333-333[UP5];19-21,315-313[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UACUUUUUGUUGCCUUUUUUG&AAGAAAAGGUAACGAAGAUAA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN4030_c0_g1_324_TPlot.pdf
TRINITY_DN4030_c0_g1:325	si_a93	TRINITY_DN4030_c0_g1	314	334	325	-28.90	-18.90	0.653979238754325	8	3-19,332-316	1-2,334-333[UP5];20-21,315-314[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACUUUUUGUUGCCUUUUUUGU&UAAGAAAAGGUAACGAAGAUA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a93_TRINITY_DN4030_c0_g1_325_TPlot.pdf
TRINITY_DN4030_c0_g1:326	si_a92	TRINITY_DN4030_c0_g1	315	335	326	-28.60	-18.90	0.660839160839161	9	4-20,332-316	1-3,335-333[UP5];21-21,315-315[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUUUUUGUUGCCUUUUUUGUG&UUAAGAAAAGGUAACGAAGAU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN4030_c0_g1_326_TPlot.pdf
TRINITY_DN4030_c0_g1:327	si_a91	TRINITY_DN4030_c0_g1	316	336	327	-28.50	-18.80	0.659649122807018	9.5	5-21,332-316	1-4,336-333[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUUGUUGCCUUUUUUGUGG&AUUAAGAAAAGGUAACGAAGA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a91_TRINITY_DN4030_c0_g1_327_TPlot.pdf
TRINITY_DN4030_c0_g1:586	si_a411	TRINITY_DN4030_c0_g1	575	595	586	-17.90	-12.00	0.670391061452514	10	1-14,595-582	15-21,581-575[UP3]	.......((((((((((((((&)))))))))))))).......	UACAAACUAGGUAUGAACAAA&UUUGUUUAUAUUUAAAUAAAU	3	0.999999997320845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4030_c0_g1_586_TPlot.pdf
TRINITY_DN4030_c0_g1:664	si_a66	TRINITY_DN4030_c0_g1	653	673	664	-26.70	-17.58	0.658426966292135	7	1-12,673-662;16-21,658-653	13-15,661-659[SIL]	((((((...((((((((((((&))))))))))))...))))))	AAGAAUUUAUUGAGAGGAGUG&CGCUUCUUUCAAAUUGUUUUU	3	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4030_c0_g1_664_TPlot.pdf
TRINITY_DN4030_c0_g1:724	si_a724	TRINITY_DN4030_c0_g1	713	735	724	-36.70	-25.36	0.691008174386921	11	1-3,735-733;7-18,727-716;20-21,714-713	4-6,732-728[AILt];19-19,715-715[SIL]	((.((((((((((((.....(((&)))--...)))))))))))).))	GUCAAGAUGCCCGAGGAAGUCGA&UCG--UUACUCGGGCAUCUUUAC	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN4030_c0_g1_724_TPlot.pdf
TRINITY_DN4030_c0_g1:943	si_a756	TRINITY_DN4030_c0_g1	932	953	943	-33.10	-21.90	0.661631419939577	10.5	3-3,951-951;4-16,949-937	1-2,953-952[UP5];x-x,950-950[BULt];17-21,936-932[UP3]	.....(((((((((((((.(..&..)-))))))))))))).....	UUGGCGAACCCAAAGGAGCGGU&AAC-CUCCUUUGGGUUUUUGAU	3	0.999999995277542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4030_c0_g1_943_TPlot.pdf
TRINITY_DN4031_c0_g1:1233	si_a879	TRINITY_DN4031_c0_g1	1222	1242	1233	-27.40	-18.20	0.664233576642336	6.5	1-10,1242-1233;12-16,1231-1227;18-21,1225-1222	11-11,1232-1232[SIL];17-17,1226-1226[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	ACUGGAUUGACUGUAGCUGAA&UUUAGUUGCAAUCAAUAUAGU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN4031_c0_g1_1233_TPlot.pdf
TRINITY_DN4031_c0_g1:1234	si_a878	TRINITY_DN4031_c0_g1	1223	1243	1234	-26.70	-18.20	0.681647940074906	6.5	1-11,1243-1233;13-17,1231-1227;19-21,1225-1223	12-12,1232-1232[SIL];18-18,1226-1226[SIL]	(((.(((((.(((((((((((&))))))))))).))))).)))	CUGGAUUGACUGUAGCUGAAU&AUUUAGUUGCAAUCAAUAUAG	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN4031_c0_g1_1234_TPlot.pdf
TRINITY_DN4031_c0_g1:1256	si_s319	TRINITY_DN4031_c0_g1	1244	1265	1256	-31.30	-21.10	0.674121405750799	8.5	1-11,1265-1255;12-15,1253-1250	x-x,1254-1254[BULt];16-21,1249-1244[UP3]	......((((.(((((((((((&)))))))))))-))))......	AUUUCCGUGAUCAAGAAGGACA&UGUCCUUCUUG-UUACAAACAU	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN4031_c0_g1_1256_TPlot.pdf
TRINITY_DN4031_c0_g1:1258	si_s317	TRINITY_DN4031_c0_g1	1246	1268	1258	-33.10	-21.60	0.652567975830816	7.5	1-3,1268-1266;4-13,1264-1255;14-17,1253-1250	x-x,1265-1265[BULt];x-x,1254-1254[BULt];18-21,1249-1246[UP3]	....((((.((((((((((.(((&)))-))))))))))-))))....	UUCCGUGAUCAAGAAGGACAAGA&UCU-GUCCUUCUUG-UUACAAAC	2	0.980657087003412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN4031_c0_g1_1258_TPlot.pdf
TRINITY_DN4031_c0_g1:1259	si_s316	TRINITY_DN4031_c0_g1	1247	1269	1259	-31.50	-21.80	0.692063492063492	7.5	2-4,1268-1266;5-14,1264-1255;15-18,1253-1250	1-1,1269-1269[UP5];x-x,1265-1265[BULt];x-x,1254-1254[BULt];19-21,1249-1247[UP3]	...((((.((((((((((.(((.&.)))-))))))))))-))))...	UCCGUGAUCAAGAAGGACAAGAU&UUCU-GUCCUUCUUG-UUACAAA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN4031_c0_g1_1259_TPlot.pdf
TRINITY_DN4031_c0_g1:1260	si_s315	TRINITY_DN4031_c0_g1	1248	1270	1260	-31.60	-21.80	0.689873417721519	8.5	3-5,1268-1266;6-15,1264-1255;16-19,1253-1250	1-2,1270-1269[UP5];x-x,1265-1265[BULt];x-x,1254-1254[BULt];20-21,1249-1248[UP3]	..((((.((((((((((.(((..&..)))-))))))))))-))))..	CCGUGAUCAAGAAGGACAAGAUG&AUUCU-GUCCUUCUUG-UUACAA	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN4031_c0_g1_1260_TPlot.pdf
TRINITY_DN4031_c0_g1:1261	si_s314	TRINITY_DN4031_c0_g1	1249	1270	1261	-31.50	-21.90	0.695238095238095	6.5	2-4,1269-1267;6-16,1265-1255;17-20,1253-1250	1-1,1270-1270[UP5];5-5,1266-1266[SIL];x-x,1254-1254[BULt];21-21,1249-1249[UP3]	.((((.(((((((((((.(((.&.))).)))))))))))-)))).	CGUGAUCAAGAAGGACAAGAUG&AAUUCUGUCCUUCUUG-UUACA	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN4031_c0_g1_1261_TPlot.pdf
TRINITY_DN4031_c0_g1:1262	si_s313	TRINITY_DN4031_c0_g1	1250	1271	1262	-30.80	-21.50	0.698051948051948	7.5	3-5,1269-1267;7-17,1265-1255;18-21,1253-1250	1-2,1271-1270[UP5];6-6,1266-1266[SIL];x-x,1254-1254[BULt]	((((.(((((((((((.(((..&..))).)))))))))))-))))	GUGAUCAAGAAGGACAAGAUGU&AAAUUCUGUCCUUCUUG-UUAC	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN4031_c0_g1_1262_TPlot.pdf
TRINITY_DN4031_c0_g1:548	si_a129	TRINITY_DN4031_c0_g1	537	557	548	-25.20	-16.60	0.658730158730159	9	2-14,556-544	1-1,557-557[UP5];15-21,543-537[UP3]	.......(((((((((((((.&.))))))))))))).......	CAGUACGUACUAUUGCUAUGG&UUAUAGCAAUAGUAAUUAAUC	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN4031_c0_g1_548_TPlot.pdf
TRINITY_DN4031_c0_g1:549	si_a128	TRINITY_DN4031_c0_g1	538	558	549	-23.20	-18.00	0.775862068965517	8	1-15,558-544	16-21,543-538[UP3]	......(((((((((((((((&)))))))))))))))......	AGUACGUACUAUUGCUAUGGA&UUUAUAGCAAUAGUAAUUAAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN4031_c0_g1_549_TPlot.pdf
TRINITY_DN4031_c0_g1:774	si_s897	TRINITY_DN4031_c0_g1	763	783	774	-31.30	-21.80	0.696485623003195	5	1-9,783-775;11-14,773-770;16-21,768-763	10-10,774-774[SIL];15-15,769-769[SIL]	((((((.((((.(((((((((&))))))))).)))).))))))	UUGAAACUGAGAAGAGAGCCU&AGGCUUUCUCUUCAAUUUCAA	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN4031_c0_g1_774_TPlot.pdf
TRINITY_DN4032_c0_g1:2067	si_a121	TRINITY_DN4032_c0_g1	2056	2076	2067	-29.30	-19.90	0.679180887372014	9	2-5,2075-2072;7-10,2070-2067;13-21,2064-2056	1-1,2076-2076[UP5];6-6,2071-2071[SIL];11-12,2066-2065[SIL]	(((((((((..((((.((((.&.)))).))))..)))))))))	GCUGUUGCUCAAAAAGAGGCA&AGCUUGUUUUAUAGCAAUAGU	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN4032_c0_g1_2067_TPlot.pdf
TRINITY_DN4032_c0_g1:2068	si_a637	TRINITY_DN4032_c0_g1	2057	2075	2068	-25.80	-17.20	0.666666666666667	8	1-3,2075-2073;6-20,2072-2058	4-5,x-x[BULq];21-21,2057-2057[UP3]	.(((((((((((((((--(((&)))..))))))))))))))).	CUGUUGCUCAAAAAGA--GGC&GUCGAUUUUUUUGAGUAAUAU	4	0.999999997419751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4032_c0_g1_2068_TPlot.pdf
TRINITY_DN4032_c0_g1:2127	si_a846	TRINITY_DN4032_c0_g1	2114	2136	2127	-32.50	-23.10	0.710769230769231	9.5	1-10,2136-2127;11-15,2124-2120;18-21,2117-2114	x-x,2126-2125[BULt];16-17,2119-2118[SIL]	((((..(((((..((((((((((&))))))))))--)))))..))))	GGAUGGCAGGUGCUGGUAGCUUC&GAAGUUGCUA--ACUUGAAAUCC	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a846_TRINITY_DN4032_c0_g1_2127_TPlot.pdf
TRINITY_DN4032_c0_g1:3723	si_s4	TRINITY_DN4032_c0_g1	3712	3732	3723	-21.60	-14.20	0.657407407407407	6.5	1-11,3732-3722;13-16,3721-3718;17-21,3716-3712	12-12,x-x[BULq];x-x,3717-3717[BULt]	(((((.((((-(((((((((((&))))))))))).))))-)))))	UAGUGUAUAA-GAGUGAUGUAA&UUAUAUUACUUAUUAU-UACUA	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN4032_c0_g1_3723_TPlot.pdf
TRINITY_DN4034_c0_g1:176	si_a351	TRINITY_DN4034_c0_g1	165	185	176	-20.50	-13.60	0.663414634146341	15	9-21,177-165	1-8,185-178[UP5]	(((((((((((((........&........)))))))))))))	AUCAAAAUAGAAUAUUACAUA&AAAUAUUAAUUCUAUUUUGAU	2	0.999754944886661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN4034_c0_g1_176_TPlot.pdf
TRINITY_DN4035_c0_g1:622	si_s557	TRINITY_DN4035_c0_g1	611	631	622	-28.80	-19.10	0.663194444444445	16.5	9-21,623-611	1-8,631-624[UP5]	(((((((((((((........&........)))))))))))))	UGUCCCGGAGAUAAAUUGUUU&AGAAUUAAUAUUUUCGGGACA	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN4035_c0_g1_622_TPlot.pdf
TRINITY_DN40367_c0_g1:192	si_a471	TRINITY_DN40367_c0_g1	181	201	192	-21.10	-14.80	0.701421800947867	10	5-18,197-184	1-4,201-198[UP5];19-21,183-181[UP3]	...((((((((((((((....&....))))))))))))))...	UUUUAACAAUAAUUACAGAGG&AAUAUGUAAUUAUUGUUAUAU	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN40367_c0_g1_192_TPlot.pdf
TRINITY_DN40382_c0_g1:1258	si_a414	TRINITY_DN40382_c0_g1	1247	1267	1258	-18.10	-12.20	0.674033149171271	7	3-18,1265-1250	1-2,1267-1266[UP5];19-21,1249-1247[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUGAUUUAUUUAAAUAUAGUU&GUUUAUAUUUAAAUAAAUAUA	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN40382_c0_g1_1258_TPlot.pdf
TRINITY_DN40382_c0_g1:1259	si_a413	TRINITY_DN40382_c0_g1	1248	1268	1259	-18.40	-12.20	0.66304347826087	8	4-19,1265-1250	1-3,1268-1266[UP5];20-21,1249-1248[UP3]	..((((((((((((((((...&...))))))))))))))))..	UGAUUUAUUUAAAUAUAGUUA&UGUUUAUAUUUAAAUAAAUAU	4	0.999991392983814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN40382_c0_g1_1259_TPlot.pdf
TRINITY_DN40382_c0_g1:1260	si_a412	TRINITY_DN40382_c0_g1	1249	1269	1260	-18.30	-12.20	0.666666666666667	9	5-20,1265-1250	1-4,1269-1266[UP5];21-21,1249-1249[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAUUUAUUUAAAUAUAGUUAU&UUGUUUAUAUUUAAAUAAAUA	3	0.999998905636671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN40382_c0_g1_1260_TPlot.pdf
TRINITY_DN40389_c0_g1:302	si_s555	TRINITY_DN40389_c0_g1	291	312	302	-26.90	-17.70	0.657992565055762	9	3-9,310-304;10-20,302-292	1-2,312-311[UP5];x-x,303-303[BULt];21-21,291-291[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	GCUCGAGAAUGUAUAGUUCUUC&AUAGAAUUA-AUAUUUUCGGGA	0	0.115800948010424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN40389_c0_g1_302_TPlot.pdf
TRINITY_DN4038_c0_g1:603	si_a784	TRINITY_DN4038_c0_g1	592	612	603	-24.70	-16.50	0.668016194331984	9	1-4,612-609;7-17,606-596	5-6,608-607[SIL];18-21,595-592[UP3]	....(((((((((((..((((&))))..)))))))))))....	ACGUUAGAAAAAUGGCUGAGU&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4038_c0_g1_603_TPlot.pdf
TRINITY_DN4038_c0_g1:948	si_a339	TRINITY_DN4038_c0_g1	937	959	948	-31.10	-20.30	0.652733118971061	9.5	1-7,959-953;8-13,950-945;16-19,942-939	x-x,952-951[BULt];14-15,944-943[SIL];20-21,938-937[UP3]	..((((..((((((..(((((((&)))))))--))))))..))))..	GAGAUAAGUUCGGGGUGCAAGGA&UCCUUGU--CCCGAAAAUAUUAA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a339_TRINITY_DN4038_c0_g1_948_TPlot.pdf
TRINITY_DN4039_c0_g1:1393	si_a502	TRINITY_DN4039_c0_g1	1382	1406	1393	-32.10	-21.30	0.663551401869159	14.5	1-5,1406-1402;6-7,1397-1396;9-21,1394-1382	x-x,1401-1398[BULt];8-8,1395-1395[SIL]	(((((((((((((.((....(((((&)))))----)).)))))))))))))	AUUUCAAGGAAGAGGGCAGUGAGGC&GUUUU----UCGUCUUCCUUGGAAU	4	0.999999999998471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN4039_c0_g1_1393_TPlot.pdf
TRINITY_DN403_c0_g1:1052	si_a317	TRINITY_DN403_c0_g1	1041	1061	1052	-24.30	-16.90	0.695473251028807	8	1-4,1061-1058;6-17,1056-1045	5-5,1057-1057[SIL];18-21,1044-1041[UP3]	....((((((((((((.((((&)))).))))))))))))....	ACCCGGGGUCAUGGAUCAAUC&GAUUUAUCCAUGAUUUUUUUA	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN403_c0_g1_1052_TPlot.pdf
TRINITY_DN403_c0_g1:1054	si_a315	TRINITY_DN403_c0_g1	1043	1063	1054	-27.00	-18.00	0.666666666666667	8	2-6,1062-1058;8-19,1056-1045	1-1,1063-1063[UP5];7-7,1057-1057[SIL];20-21,1044-1043[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CCGGGGUCAUGGAUCAAUCUC&UGGAUUUAUCCAUGAUUUUUU	3	0.99999266178446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN403_c0_g1_1054_TPlot.pdf
TRINITY_DN403_c0_g1:1057	si_a312	TRINITY_DN403_c0_g1	1046	1069	1057	-31.20	-21.60	0.692307692307692	11.5	1-4,1069-1066;5-9,1062-1058;11-21,1056-1046	x-x,1065-1063[BULt];10-10,1057-1057[SIL]	(((((((((((.(((((...((((&))))---))))).)))))))))))	GGGUCAUGGAUCAAUCUCCUGAGC&GCUU---GGAUUUAUCCAUGAUUU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN403_c0_g1_1057_TPlot.pdf
TRINITY_DN403_c0_g1:1491	si_a401	TRINITY_DN403_c0_g1	1480	1500	1491	-22.60	-16.60	0.734513274336283	7.5	1-17,1500-1484	18-21,1483-1480[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACUAGGGCAGAACAAUUUUAU&AUAGAAUUGUUUUGUUUAUAU	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN403_c0_g1_1491_TPlot.pdf
TRINITY_DN403_c0_g1:1492	si_a400	TRINITY_DN403_c0_g1	1481	1501	1492	-22.80	-17.90	0.785087719298246	6	1-18,1501-1484	19-21,1483-1481[UP3]	...((((((((((((((((((&))))))))))))))))))...	CUAGGGCAGAACAAUUUUAUA&UAUAGAAUUGUUUUGUUUAUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN403_c0_g1_1492_TPlot.pdf
TRINITY_DN403_c0_g1:1494	si_a398	TRINITY_DN403_c0_g1	1483	1503	1494	-22.40	-17.90	0.799107142857143	7	3-20,1501-1484	1-2,1503-1502[UP5];21-21,1483-1483[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGGGCAGAACAAUUUUAUAGA&AAUAUAGAAUUGUUUUGUUUA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN403_c0_g1_1494_TPlot.pdf
TRINITY_DN403_c0_g1:1495	si_a397	TRINITY_DN403_c0_g1	1484	1504	1495	-24.00	-17.40	0.725	8	4-21,1501-1484	1-3,1504-1502[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGGCAGAACAAUUUUAUAGAG&GAAUAUAGAAUUGUUUUGUUU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN403_c0_g1_1495_TPlot.pdf
TRINITY_DN403_c0_g1:1496	si_a396	TRINITY_DN403_c0_g1	1485	1505	1496	-24.70	-17.10	0.692307692307692	9.5	5-21,1501-1485	1-4,1505-1502[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGCAGAACAAUUUUAUAGAGG&AGAAUAUAGAAUUGUUUUGUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN403_c0_g1_1496_TPlot.pdf
TRINITY_DN403_c0_g1:1514	si_s79	TRINITY_DN403_c0_g1	1502	1523	1514	-26.20	-19.60	0.748091603053435	6.5	1-11,1523-1513;12-13,1511-1510;15-21,1508-1502	x-x,1512-1512[BULt];14-14,1509-1509[SIL]	(((((((.((.(((((((((((&)))))))))))-)).)))))))	GAGGAGACGGCGAAGGAAAGAA&UUUUUUCUUUC-CUUUCUUCUU	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN403_c0_g1_1514_TPlot.pdf
TRINITY_DN403_c0_g1:1515	si_s82	TRINITY_DN403_c0_g1	1502	1524	1515	-28.90	-21.10	0.730103806228374	6	1-12,1524-1513;13-14,1511-1510;15-21,1508-1502	x-x,1512-1512[BULt];x-x,1509-1509[BULt]	(((((((.((.((((((((((((&))))))))))))-))-)))))))	GAGGAGACGGCGAAGGAAAGAAG&UUUCUUUCCUUU-CU-UCUUCUU	3	0.999999999999307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN403_c0_g1_1515_TPlot.pdf
TRINITY_DN403_c0_g1:1516	si_s77	TRINITY_DN403_c0_g1	1504	1525	1516	-25.50	-18.10	0.709803921568627	6.5	1-13,1525-1513;14-15,1511-1510;17-21,1508-1504	x-x,1512-1512[BULt];16-16,1509-1509[SIL]	(((((.((.(((((((((((((&)))))))))))))-)).)))))	GGAGACGGCGAAGGAAAGAAGG&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN403_c0_g1_1516_TPlot.pdf
TRINITY_DN403_c0_g1:1517	si_s76	TRINITY_DN403_c0_g1	1505	1526	1517	-23.60	-17.40	0.73728813559322	7	1-14,1526-1513;15-16,1511-1510;18-21,1508-1505	x-x,1512-1512[BULt];17-17,1509-1509[SIL]	((((.((.((((((((((((((&))))))))))))))-)).))))	GAGACGGCGAAGGAAAGAAGGU&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN403_c0_g1_1517_TPlot.pdf
TRINITY_DN403_c0_g1:1518	si_s75	TRINITY_DN403_c0_g1	1506	1527	1518	-24.00	-17.40	0.725	6.5	1-15,1527-1513;16-17,1511-1510;19-21,1508-1506	x-x,1512-1512[BULt];18-18,1509-1509[SIL]	(((.((.(((((((((((((((&)))))))))))))))-)).)))	AGACGGCGAAGGAAAGAAGGUA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN403_c0_g1_1518_TPlot.pdf
TRINITY_DN403_c0_g1:2798	si_s61	TRINITY_DN403_c0_g1	2786	2807	2798	-26.50	-17.30	0.652830188679245	10.5	2-11,2806-2797;13-16,2794-2791	1-1,2807-2807[UP5];12-12,2796-2795[AILt];17-21,2790-2786[UP3]	.....((((..((((((((((.&.))))))))))-.)))).....	UCAACUGGAUUGUUGCUAACUG&AAGUUAGCAAC-UUCUAUUUUU	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN403_c0_g1_2798_TPlot.pdf
TRINITY_DN403_c0_g1:3058	si_s820	TRINITY_DN403_c0_g1	3045	3067	3058	-22.10	-14.68	0.664253393665158	5.5	1-13,3067-3055;16-21,3050-3045	14-15,3054-3051[AILt]	((((((....(((((((((((((&)))))))))))))--..))))))	UGUUUUGAAAGUUAUUAAGGAAA&UUUUCUUAAUAAU--GAAAAACA	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN403_c0_g1_3058_TPlot.pdf
TRINITY_DN403_c0_g1:3516	si_s555	TRINITY_DN403_c0_g1	3505	3525	3516	-26.90	-18.90	0.702602230483271	3	1-17,3525-3509;19-21,3507-3505	18-18,3508-3508[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	UUCAGAAAGUAUUAGUUCUAU&AUAGAAUUAAUAUUUUCGGGA	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN403_c0_g1_3516_TPlot.pdf
TRINITY_DN403_c0_g1:3517	si_s554	TRINITY_DN403_c0_g1	3506	3526	3517	-25.90	-19.10	0.737451737451738	4.5	1-18,3526-3509	19-21,3508-3506[UP3]	...((((((((((((((((((&))))))))))))))))))...	UCAGAAAGUAUUAGUUCUAUU&AAUAGAAUUAAUAUUUUCGGG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN403_c0_g1_3517_TPlot.pdf
TRINITY_DN403_c0_g1:3518	si_s553	TRINITY_DN403_c0_g1	3507	3527	3518	-23.50	-19.30	0.821276595744681	4.5	2-19,3526-3509	1-1,3527-3527[UP5];20-21,3508-3507[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAGAAAGUAUUAGUUCUAUUA&AAAUAGAAUUAAUAUUUUCGG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN403_c0_g1_3518_TPlot.pdf
TRINITY_DN403_c0_g1:3522	si_s549	TRINITY_DN403_c0_g1	3511	3531	3522	-20.50	-14.80	0.721951219512195	10	6-21,3526-3511	1-5,3531-3527[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGUAUUAGUUCUAUUAAUAG&AUCAAAAUAGAAUUAAUAUUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN403_c0_g1_3522_TPlot.pdf
TRINITY_DN403_c0_g1:3860	si_a468	TRINITY_DN403_c0_g1	3848	3869	3860	-21.30	-14.80	0.694835680751174	6	1-11,3869-3859;12-19,3857-3850	x-x,3858-3858[BULt];20-21,3849-3848[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	GUACAGUGAUAUAUAUAUUAUA&UAUAAUAUGUA-AUUAUUGUUA	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN403_c0_g1_3860_TPlot.pdf
TRINITY_DN403_c0_g1:3861	si_a467	TRINITY_DN403_c0_g1	3849	3870	3861	-21.10	-14.80	0.701421800947867	6	2-12,3869-3859;13-20,3857-3850	1-1,3870-3870[UP5];x-x,3858-3858[BULt];21-21,3849-3849[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UACAGUGAUAUAUAUAUUAUAA&AUAUAAUAUGUA-AUUAUUGUU	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN403_c0_g1_3861_TPlot.pdf
TRINITY_DN403_c0_g1:3862	si_a466	TRINITY_DN403_c0_g1	3850	3871	3862	-21.50	-14.80	0.688372093023256	6	3-13,3869-3859;14-21,3857-3850	1-2,3871-3870[UP5];x-x,3858-3858[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	ACAGUGAUAUAUAUAUUAUAAA&UAUAUAAUAUGUA-AUUAUUGU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN403_c0_g1_3862_TPlot.pdf
TRINITY_DN403_c0_g1:3863	si_a465	TRINITY_DN403_c0_g1	3851	3872	3863	-20.90	-13.70	0.655502392344498	8	4-14,3869-3859;15-21,3857-3851	1-3,3872-3870[UP5];x-x,3858-3858[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	CAGUGAUAUAUAUAUUAUAAAG&AUAUAUAAUAUGUA-AUUAUUG	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN403_c0_g1_3863_TPlot.pdf
TRINITY_DN4041_c0_g1:6792	si_s660	TRINITY_DN4041_c0_g1	6781	6801	6792	-35.00	-24.00	0.685714285714286	11	3-13,6799-6789	1-2,6801-6800[UP5];14-21,6788-6781[UP3]	........(((((((((((..&..)))))))))))........	UAGCGCCCCGAUCCCCCGAAA&AAUCGGGGGAUCGAAUUGAUU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN4041_c0_g1_6792_TPlot.pdf
TRINITY_DN4041_c0_g1:7354	si_a849	TRINITY_DN4041_c0_g1	7343	7364	7354	-30.70	-20.90	0.680781758957655	8	1-6,7364-7359;7-14,7357-7350;17-18,7347-7346	x-x,7358-7358[BULt];15-16,7349-7348[SIL];19-21,7345-7343[UP3]	...((..((((((((.((((((&))))))-))))))))..))...	CCAGGUGUUCAAGUUGAGCGAC&GUUGCU-AACUUGAAAUCCAAU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a849_TRINITY_DN4041_c0_g1_7354_TPlot.pdf
TRINITY_DN40422_c0_g1:317	si_a646	TRINITY_DN40422_c0_g1	306	326	317	-29.40	-19.90	0.67687074829932	6.5	1-7,326-320;9-17,318-310	8-8,319-319[SIL];18-21,309-306[UP3]	....(((((((((.(((((((&))))))).)))))))))....	UAAACCGGUAUAUAACUCAAA&UUUGAGUAAUAUAUCGGGAAA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN40422_c0_g1_317_TPlot.pdf
TRINITY_DN40422_c0_g1:320	si_a643	TRINITY_DN40422_c0_g1	309	329	320	-28.30	-22.70	0.802120141342756	4.5	1-10,329-320;12-20,318-310	11-11,319-319[SIL];21-21,309-309[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	ACCGGUAUAUAACUCAAAAGA&UUUUUUGAGUAAUAUAUCGGG	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN40422_c0_g1_320_TPlot.pdf
TRINITY_DN40422_c0_g1:323	si_a640	TRINITY_DN40422_c0_g1	312	332	323	-24.10	-17.40	0.721991701244813	5.5	3-13,330-320;15-21,318-312	1-2,332-331[UP5];14-14,319-319[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GGUAUAUAACUCAAAAGAAGG&GAUUUUUUUGAGUAAUAUAUC	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN40422_c0_g1_323_TPlot.pdf
TRINITY_DN40423_c0_g1:105	si_s87	TRINITY_DN40423_c0_g1	94	114	105	-32.90	-21.50	0.653495440729483	5.5	2-10,113-105;12-14,103-101;16-20,99-95	1-1,114-114[UP5];11-11,104-104[SIL];15-15,100-100[SIL];21-21,94-94[UP3]	.(((((.(((.(((((((((.&.))))))))).))).))))).	UAGCGAUGGAAAAGAAAGGAC&UUCCUUUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN40423_c0_g1_105_TPlot.pdf
TRINITY_DN40428_c0_g1:106	si_a326	TRINITY_DN40428_c0_g1	93	116	106	-26.20	-17.10	0.652671755725191	10	2-6,115-111;7-13,109-103;14-21,100-93	1-1,116-116[UP5];x-x,110-110[BULt];x-x,102-101[BULt]	((((((((..(((((((.(((((.&.)))))-)))))))--))))))))	GACGAGGGUCAUGAGAGCGAUCAG&AUGAUU-UUUUUAU--UCCUUGUC	3	0.99999999999885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN40428_c0_g1_106_TPlot.pdf
TRINITY_DN4042_c0_g1:3282	si_s207	TRINITY_DN4042_c0_g1	3272	3290	3282	-33.00	-21.70	0.657575757575758	9.5	3-9,3288-3282;12-21,3281-3272	1-2,3290-3289[UP5];10-11,x-x[BULq]	((((((((((--(((((((..&..)))))))..))))))))))	UUUCGAACGC--UUGGUGCUA&AUGUACCAGUUGUGUUCGAAA	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN4042_c0_g1_3282_TPlot.pdf
TRINITY_DN4042_c0_g1:393	si_a756	TRINITY_DN4042_c0_g1	374	402	393	-33.10	-23.50	0.709969788519637	22	3-10,400-393;11-20,384-375	1-2,402-401[UP5];x-x,392-385[BULt];21-21,374-374[UP3]	.((((((((((........((((((((..&..))))))))--------)))))))))).	CUCAAAAACCCUUAUUUUUGGAGGAGGAA&AACCUCCUUU--------GGGUUUUUGAU	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4042_c0_g1_393_TPlot.pdf
TRINITY_DN4042_c0_g1:573	si_a25	TRINITY_DN4042_c0_g1	563	582	573	-26.50	-19.40	0.732075471698113	9	5-16,578-567;18-21,566-563	1-4,582-579[UP5];17-17,x-x[BULq]	((((-((((((((((((....&....)))))))))))).))))	GGUC-UAGAACUAGAAAAAGG&UUUAUUUUUAGUUCUAAGACC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN4042_c0_g1_573_TPlot.pdf
TRINITY_DN4042_c0_g1:706	si_s69	TRINITY_DN4042_c0_g1	688	715	706	-23.40	-16.40	0.700854700854701	12	3-14,713-702;15-21,694-688	1-2,715-714[UP5];x-x,701-695[BULt]	(((((((.......((((((((((((..&..))))))))))))-------)))))))	GAAAGAAGUAUAUCAAGAGAUAGAAGAG&AACUUCUAUUUUUU-------UUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4042_c0_g1_706_TPlot.pdf
TRINITY_DN4042_c0_g1:774	si_s70	TRINITY_DN4042_c0_g1	764	783	774	-25.80	-18.60	0.72093023255814	5.5	1-15,783-769;18-21,767-764	16-17,768-768[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	GGGAU-AGGAGAGAUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	4	0.999999939286455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4042_c0_g1_774_TPlot.pdf
TRINITY_DN4042_c0_g1:808	si_s796	TRINITY_DN4042_c0_g1	797	817	808	-30.30	-20.50	0.676567656765677	6.5	2-5,816-813;7-12,811-806;14-18,804-800;20-21,798-797	1-1,817-817[UP5];6-6,812-812[SIL];13-13,805-805[SIL];19-19,799-799[SIL]	((.(((((.((((((.((((.&.)))).)))))).))))).))	GAGGAAGAAAAGAUAGGAGCA&AGCUCGUAUUUUAUCUUCGUU	4	0.999936255268846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN4042_c0_g1_808_TPlot.pdf
TRINITY_DN4044_c0_g1:2682	si_s549	TRINITY_DN4044_c0_g1	2671	2691	2682	-20.50	-13.40	0.653658536585366	11	2-3,2690-2689;6-17,2686-2675	1-1,2691-2691[UP5];4-5,2688-2687[SIL];18-21,2674-2671[UP3]	....((((((((((((..((.&.))..))))))))))))....	GUGAGUUAGUUCUGUUGGGAA&AUCAAAAUAGAAUUAAUAUUU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN4044_c0_g1_2682_TPlot.pdf
TRINITY_DN40457_c0_g1:1049	si_s505	TRINITY_DN40457_c0_g1	1038	1058	1049	-24.70	-18.30	0.740890688259109	5.5	2-17,1057-1042	1-1,1058-1058[UP5];18-21,1041-1038[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUUUAUGUAGAAUUGUUUUGC&ACAAAACAAUUCUAUAUUCUU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN40457_c0_g1_1049_TPlot.pdf
TRINITY_DN4045_c0_g1:2164	si_a547	TRINITY_DN4045_c0_g1	2153	2173	2164	-26.90	-20.80	0.773234200743494	7	1-3,2173-2171;6-20,2168-2154	4-5,2170-2169[SIL];21-21,2153-2153[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	CGAUAAAGAAGUAGAUGAGAC&GUUCAAUCUAUUUCUUUAUCU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN4045_c0_g1_2164_TPlot.pdf
TRINITY_DN4045_c0_g1:2344	si_a550	TRINITY_DN4045_c0_g1	2333	2353	2344	-30.90	-20.20	0.653721682847896	7.5	3-14,2351-2340;17-20,2337-2334	1-2,2353-2352[UP5];15-16,2339-2338[SIL];21-21,2333-2333[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	AGGGGUGAAAGAAGUAGAUAG&CAAUCUAUUUCUUUAUCUCCC	4	0.999745850014447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN4045_c0_g1_2344_TPlot.pdf
TRINITY_DN4045_c0_g1:2345	si_a549	TRINITY_DN4045_c0_g1	2334	2354	2345	-29.50	-20.20	0.684745762711864	8.5	4-15,2351-2340;18-21,2337-2334	1-3,2354-2352[UP5];16-17,2339-2338[SIL]	((((..((((((((((((...&...))))))))))))..))))	GGGGUGAAAGAAGUAGAUAGG&UCAAUCUAUUUCUUUAUCUCC	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN4045_c0_g1_2345_TPlot.pdf
TRINITY_DN4045_c0_g1:2346	si_a548	TRINITY_DN4045_c0_g1	2334	2356	2346	-27.20	-18.10	0.665441176470588	8.5	1-3,2356-2354;5-15,2351-2341;16-21,2339-2334	4-4,2353-2352[AILt];x-x,2340-2340[BULt]	((((((.(((((((((((..(((&)))-.)))))))))))-))))))	GGGGUGAAAGAAGUAGAUAGGGA&UUC-AAUCUAUUUCUU-UAUCUC	4	0.999745850014447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN4045_c0_g1_2346_TPlot.pdf
TRINITY_DN4045_c0_g1:2419	si_a26	TRINITY_DN4045_c0_g1	2402	2428	2419	-28.00	-20.30	0.725	17	1-10,2428-2419;11-20,2412-2403	x-x,2418-2413[BULt];21-21,2402-2402[UP3]	.((((((((((......((((((((((&))))))))))------)))))))))).	UGGUCUUAGGAAUAAGUCUGAAGAUGA&UUAUUUUUAG------UUCUAAGACCG	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN4045_c0_g1_2419_TPlot.pdf
TRINITY_DN4045_c0_g1:2421	si_a24	TRINITY_DN4045_c0_g1	2404	2430	2421	-24.20	-16.60	0.685950413223141	18.5	3-12,2428-2419;13-21,2412-2404	1-2,2430-2429[UP5];x-x,2418-2413[BULt]	(((((((((......((((((((((..&..))))))))))------)))))))))	GUCUUAGGAAUAAGUCUGAAGAUGACU&AUUUAUUUUUAG------UUCUAAGAC	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN4045_c0_g1_2421_TPlot.pdf
TRINITY_DN4045_c0_g1:2750	si_s78	TRINITY_DN4045_c0_g1	2739	2760	2750	-26.20	-17.50	0.66793893129771	6.5	2-9,2759-2752;10-18,2750-2742;20-21,2740-2739	1-1,2760-2760[UP5];x-x,2751-2751[BULt];19-19,2741-2741[SIL]	((.(((((((((.((((((((.&.))))))))-))))))))).))	AGCAGAAGGGAGAAGGAAAAAU&UUUUUUUCU-UUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4045_c0_g1_2750_TPlot.pdf
TRINITY_DN4045_c0_g1:2752	si_s75	TRINITY_DN4045_c0_g1	2742	2761	2752	-24.00	-17.00	0.708333333333333	5.5	1-10,2761-2752;12-21,2751-2742	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	AGAAGGGAGA-AGGAAAAAUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4045_c0_g1_2752_TPlot.pdf
TRINITY_DN4045_c0_g1:2753	si_s74	TRINITY_DN4045_c0_g1	2743	2762	2753	-25.00	-18.90	0.756	6	1-11,2762-2752;13-21,2751-2743	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GAAGGGAGA-AGGAAAAAUGG&CUAUUUUUUUUCUUUCCUUUC	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4045_c0_g1_2753_TPlot.pdf
TRINITY_DN4045_c0_g1:2754	si_a789	TRINITY_DN4045_c0_g1	2743	2763	2754	-24.80	-18.50	0.745967741935484	8	1-11,2763-2753;13-18,2751-2746	12-12,2752-2752[SIL];19-21,2745-2743[UP3]	...((((((.(((((((((((&))))))))))).))))))...	GAAGGGAGAAGGAAAAAUGGA&UCUAUUUUUCUAUUUUCCAAU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4045_c0_g1_2754_TPlot.pdf
TRINITY_DN4045_c0_g1:2755	si_a788	TRINITY_DN4045_c0_g1	2744	2764	2755	-24.80	-19.40	0.782258064516129	6	1-12,2764-2753;14-19,2751-2746	13-13,2752-2752[SIL];20-21,2745-2744[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AAGGGAGAAGGAAAAAUGGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4045_c0_g1_2755_TPlot.pdf
TRINITY_DN4045_c0_g1:2756	si_a787	TRINITY_DN4045_c0_g1	2745	2765	2756	-26.30	-22.30	0.847908745247148	4.5	1-13,2765-2753;15-20,2751-2746	14-14,2752-2752[SIL];21-21,2745-2745[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AGGGAGAAGGAAAAAUGGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4045_c0_g1_2756_TPlot.pdf
TRINITY_DN4045_c0_g1:2757	si_a786	TRINITY_DN4045_c0_g1	2746	2766	2757	-26.60	-23.40	0.879699248120301	3.5	1-14,2766-2753;16-21,2751-2746	15-15,2752-2752[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	GGGAGAAGGAAAAAUGGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4045_c0_g1_2757_TPlot.pdf
TRINITY_DN4045_c0_g1:2758	si_a785	TRINITY_DN4045_c0_g1	2747	2767	2758	-25.90	-20.30	0.783783783783784	4.5	2-15,2766-2753;17-21,2751-2747	1-1,2767-2767[UP5];16-16,2752-2752[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	GGAGAAGGAAAAAUGGAAGAA&CUCUUCUAUUUUUCUAUUUUC	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4045_c0_g1_2758_TPlot.pdf
TRINITY_DN4045_c0_g1:2759	si_a329	TRINITY_DN4045_c0_g1	2745	2768	2759	-29.60	-20.50	0.692567567567568	11	1-10,2768-2759;11-15,2755-2751;17-20,2749-2746	x-x,2758-2756[BULt];16-16,2750-2750[SIL];21-21,2745-2745[UP3]	.((((.(((((...((((((((((&))))))))))---))))).)))).	AGGGAGAAGGAAAAAUGGAAGAAU&AUUUUUUUAU---UCCUUGUCCCG	2	0.993767817732346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4045_c0_g1_2759_TPlot.pdf
TRINITY_DN4045_c0_g1:2760	si_a328	TRINITY_DN4045_c0_g1	2746	2769	2760	-30.10	-20.50	0.681063122923588	11	2-11,2768-2759;12-16,2755-2751;18-21,2749-2746	1-1,2769-2769[UP5];x-x,2758-2756[BULt];17-17,2750-2750[SIL]	((((.(((((...((((((((((.&.))))))))))---))))).))))	GGGAGAAGGAAAAAUGGAAGAAUG&GAUUUUUUUAU---UCCUUGUCCC	2	0.99748780294648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4045_c0_g1_2760_TPlot.pdf
TRINITY_DN4045_c0_g1:3939	si_s205	TRINITY_DN4045_c0_g1	3928	3949	3939	-34.90	-22.90	0.656160458452722	10	4-8,3946-3942;10-21,3939-3928	1-3,3949-3947[UP5];9-9,3941-3940[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	UCGAACACAACUCAGUGCACCA&GAAUGUAC-CAGUUGUGUUCGA	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN4045_c0_g1_3939_TPlot.pdf
TRINITY_DN4047_c0_g1:461	si_a784	TRINITY_DN4047_c0_g1	450	471	461	-24.70	-16.40	0.663967611336032	9.5	3-9,469-463;11-21,460-450	1-2,471-470[UP5];10-10,462-461[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	AGAAUAGAAGGCUUAGAAGAAU&ACUCUUCUA-UUUUUCUAUUUU	2	0.999999999996569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4047_c0_g1_461_TPlot.pdf
TRINITY_DN4048_c0_g1:1160	si_a637	TRINITY_DN4048_c0_g1	1149	1169	1160	-25.80	-19.00	0.736434108527132	9	1-9,1169-1161;12-18,1158-1152	10-11,1160-1159[SIL];19-21,1151-1149[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	AACUUACUCAUUAAGAUUGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4048_c0_g1_1160_TPlot.pdf
TRINITY_DN4048_c0_g1:1161	si_a636	TRINITY_DN4048_c0_g1	1150	1170	1161	-26.30	-19.80	0.752851711026616	8	1-10,1170-1161;13-19,1158-1152	11-12,1160-1159[SIL];20-21,1151-1150[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	ACUUACUCAUUAAGAUUGACA&UGUCGAUUUUUUUGAGUAAUA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4048_c0_g1_1161_TPlot.pdf
TRINITY_DN4048_c0_g1:1162	si_a635	TRINITY_DN4048_c0_g1	1151	1171	1162	-26.10	-20.80	0.796934865900383	6	1-11,1171-1161;14-20,1158-1152	12-13,1160-1159[SIL];21-21,1151-1151[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	CUUACUCAUUAAGAUUGACAU&AUGUCGAUUUUUUUGAGUAAU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4048_c0_g1_1162_TPlot.pdf
TRINITY_DN4048_c0_g1:1164	si_a633	TRINITY_DN4048_c0_g1	1153	1173	1164	-26.40	-19.80	0.75	7	3-13,1171-1161;16-21,1158-1153	1-2,1173-1172[UP5];14-15,1160-1159[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UACUCAUUAAGAUUGACAUUC&UUAUGUCGAUUUUUUUGAGUA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4048_c0_g1_1164_TPlot.pdf
TRINITY_DN4048_c0_g1:1197	si_a844	TRINITY_DN4048_c0_g1	1187	1206	1197	-29.20	-19.70	0.674657534246575	9	3-12,1204-1195;14-19,1194-1189	1-2,1206-1205[UP5];13-13,x-x[BULq];20-21,1188-1187[UP3]	..((((((-((((((((((..&..)))))))))).))))))..	UCUUCAAG-UGGCAGCUUUAU&UAGAAGUUGCUAACUUGAAAU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN4048_c0_g1_1197_TPlot.pdf
TRINITY_DN4048_c0_g1:1199	si_a842	TRINITY_DN4048_c0_g1	1189	1208	1199	-29.30	-19.40	0.662116040955631	10.5	5-14,1204-1195;16-21,1194-1189	1-4,1208-1205[UP5];15-15,x-x[BULq]	((((((-((((((((((....&....)))))))))).))))))	UUCAAG-UGGCAGCUUUAUGC&AAUAGAAGUUGCUAACUUGAA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a842_TRINITY_DN4048_c0_g1_1199_TPlot.pdf
TRINITY_DN4048_c0_g1:1277	si_a71	TRINITY_DN4048_c0_g1	1266	1291	1277	-23.30	-15.92	0.683261802575107	14.5	1-7,1291-1285;9-20,1278-1267	8-8,1284-1279[AILt];21-21,1266-1266[UP3]	.((((((((((((......(((((((&)))))))-----.)))))))))))).	AGAUGAGGAACAAGAUACCUUGAAAG&CUUUCAA-----AUUGUUUUUCAUUA	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4048_c0_g1_1277_TPlot.pdf
TRINITY_DN4048_c0_g1:1278	si_a70	TRINITY_DN4048_c0_g1	1267	1292	1278	-23.90	-17.02	0.712133891213389	13.5	1-8,1292-1285;10-21,1278-1267	9-9,1284-1279[AILt]	((((((((((((......((((((((&))))))))-----.))))))))))))	GAUGAGGAACAAGAUACCUUGAAAGA&UCUUUCAA-----AUUGUUUUUCAUU	3	0.999930580745155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4048_c0_g1_1278_TPlot.pdf
TRINITY_DN4048_c0_g1:1408	si_a787	TRINITY_DN4048_c0_g1	1396	1420	1408	-26.30	-17.32	0.658555133079848	12	1-6,1420-1415;9-16,1409-1402;17-21,1400-1396	7-8,1414-1410[AILt];x-x,1401-1401[BULt]	(((((.((((((((.....((((((&))))))---..))))))))-)))))	UGGAACAAUAGAAAUUCUUUAGAGG&CUUCUA---UUUUUCUAUU-UUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4048_c0_g1_1408_TPlot.pdf
TRINITY_DN4048_c0_g1:1556	si_a789	TRINITY_DN4048_c0_g1	1544	1568	1556	-24.80	-16.80	0.67741935483871	11.5	1-5,1568-1564;6-10,1560-1556;11-21,1554-1544	x-x,1563-1561[BULt];x-x,1555-1555[BULt]	(((((((((((.(((((...(((((&)))))---)))))-)))))))))))	GUUGGAAAAUAUGGAAAGUCGUGGA&UCUAU---UUUUC-UAUUUUCCAAU	3	0.999999999220712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4048_c0_g1_1556_TPlot.pdf
TRINITY_DN4048_c0_g1:1559	si_a323	TRINITY_DN4048_c0_g1	1545	1568	1559	-26.80	-17.72	0.661194029850746	10.5	1-13,1568-1556;16-19,1550-1547	14-15,1555-1551[AILt];20-21,1546-1545[UP3]	..((((.....(((((((((((((&)))))))))))))---..))))..	UUGGAAAAUAUGGAAAGUCGUGGA&UCCAUGAUUUUUU---UAUUCCUU	2	0.999968566676748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN4048_c0_g1_1559_TPlot.pdf
TRINITY_DN4048_c0_g1:1560	si_a322	TRINITY_DN4048_c0_g1	1546	1569	1560	-27.00	-19.02	0.704444444444444	9	1-14,1569-1556;17-20,1550-1547	15-16,1555-1551[AILt];21-21,1546-1546[UP3]	.((((.....((((((((((((((&))))))))))))))---..)))).	UGGAAAAUAUGGAAAGUCGUGGAU&AUCCAUGAUUUUUU---UAUUCCU	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN4048_c0_g1_1560_TPlot.pdf
TRINITY_DN4048_c0_g1:1561	si_a321	TRINITY_DN4048_c0_g1	1547	1570	1561	-26.70	-19.72	0.738576779026217	8	1-15,1570-1556;18-21,1550-1547	16-17,1555-1551[AILt]	((((.....(((((((((((((((&)))))))))))))))---..))))	GGAAAAUAUGGAAAGUCGUGGAUA&UAUCCAUGAUUUUUU---UAUUCC	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN4048_c0_g1_1561_TPlot.pdf
TRINITY_DN4048_c0_g1:1562	si_a320	TRINITY_DN4048_c0_g1	1550	1571	1562	-24.40	-17.50	0.717213114754098	6	2-16,1570-1556;17-20,1554-1551	1-1,1571-1571[UP5];x-x,1555-1555[BULt];21-21,1550-1550[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	AAAUAUGGAAAGUCGUGGAUAU&UUAUCCAUGAUUUUUU-UAUUC	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN4048_c0_g1_1562_TPlot.pdf
TRINITY_DN4048_c0_g1:1563	si_a319	TRINITY_DN4048_c0_g1	1551	1572	1563	-22.40	-17.50	0.78125	7	3-17,1570-1556;18-21,1554-1551	1-2,1572-1571[UP5];x-x,1555-1555[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	AAUAUGGAAAGUCGUGGAUAUA&UUUAUCCAUGAUUUUUU-UAUU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4048_c0_g1_1563_TPlot.pdf
TRINITY_DN4048_c0_g1:1564	si_a318	TRINITY_DN4048_c0_g1	1553	1573	1564	-22.50	-17.20	0.764444444444444	10.5	4-18,1570-1556	1-3,1573-1571[UP5];19-21,1555-1553[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAUGGAAAGUCGUGGAUAUAA&AUUUAUCCAUGAUUUUUUUAU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4048_c0_g1_1564_TPlot.pdf
TRINITY_DN4048_c0_g1:1565	si_a317	TRINITY_DN4048_c0_g1	1554	1574	1565	-24.30	-17.20	0.707818930041152	11.5	5-19,1570-1556	1-4,1574-1571[UP5];20-21,1555-1554[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUGGAAAGUCGUGGAUAUAAA&GAUUUAUCCAUGAUUUUUUUA	3	0.999872581096891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN4048_c0_g1_1565_TPlot.pdf
TRINITY_DN4048_c0_g1:1567	si_a315	TRINITY_DN4048_c0_g1	1556	1579	1567	-27.00	-19.00	0.703703703703704	10	2-6,1578-1574;7-21,1570-1556	1-1,1579-1579[UP5];x-x,1573-1571[BULt]	(((((((((((((((...(((((.&.)))))---)))))))))))))))	GGAAAGUCGUGGAUAUAAAAUUCG&UGGAUU---UAUCCAUGAUUUUUU	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN4048_c0_g1_1567_TPlot.pdf
TRINITY_DN4048_c0_g1:1568	si_a314	TRINITY_DN4048_c0_g1	1557	1580	1568	-27.10	-20.20	0.745387453874539	9.5	1-7,1580-1574;8-21,1570-1557	x-x,1573-1571[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GAAAGUCGUGGAUAUAAAAUUCGA&UUGGAUU---UAUCCAUGAUUUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN4048_c0_g1_1568_TPlot.pdf
TRINITY_DN4048_c0_g1:1569	si_a313	TRINITY_DN4048_c0_g1	1558	1581	1569	-28.70	-21.80	0.759581881533101	9	1-8,1581-1574;9-21,1570-1558	x-x,1573-1571[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	AAAGUCGUGGAUAUAAAAUUCGAG&CUUGGAUU---UAUCCAUGAUUUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN4048_c0_g1_1569_TPlot.pdf
TRINITY_DN4048_c0_g1:1570	si_a312	TRINITY_DN4048_c0_g1	1559	1582	1570	-31.20	-21.10	0.676282051282051	10	2-9,1581-1574;10-21,1570-1559	1-1,1582-1582[UP5];x-x,1573-1571[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	AAGUCGUGGAUAUAAAAUUCGAGA&GCUUGGAUU---UAUCCAUGAUUU	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN4048_c0_g1_1570_TPlot.pdf
TRINITY_DN4048_c0_g1:1736	si_s204	TRINITY_DN4048_c0_g1	1722	1747	1736	-36.30	-24.10	0.663911845730028	9.5	1-6,1747-1742;7-13,1739-1733;14-20,1729-1723	x-x,1741-1740[BULt];x-x,1732-1730[BULt];21-21,1722-1722[UP3]	.(((((((...(((((((..((((((&))))))--)))))))---))))))).	AGAGCAUAAAGGCUGGUAUUCAUUCC&GGAAUG--UACCAGU---UGUGUUCG	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s204_TRINITY_DN4048_c0_g1_1736_TPlot.pdf
TRINITY_DN4048_c0_g1:1737	si_s203	TRINITY_DN4048_c0_g1	1723	1748	1737	-35.50	-23.90	0.673239436619718	9.5	2-7,1747-1742;8-14,1739-1733;15-21,1729-1723	1-1,1748-1748[UP5];x-x,1741-1740[BULt];x-x,1732-1730[BULt]	(((((((...(((((((..((((((.&.))))))--)))))))---)))))))	GAGCAUAAAGGCUGGUAUUCAUUCCU&UGGAAUG--UACCAGU---UGUGUUC	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN4048_c0_g1_1737_TPlot.pdf
TRINITY_DN4048_c0_g1:2061	si_a67	TRINITY_DN4048_c0_g1	2044	2070	2061	-27.20	-19.66	0.722794117647059	16.5	1-11,2070-2060;13-21,2052-2044	12-12,2059-2053[AILt]	(((((((((.......(((((((((((&)))))))))))------.)))))))))	GAGAAGCAGAAUAGCAUUGAAGGAAGC&GCUUCUUUCAA------AUUGUUUUUC	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4048_c0_g1_2061_TPlot.pdf
TRINITY_DN4048_c0_g1:779	si_a424	TRINITY_DN4048_c0_g1	768	787	779	-28.40	-18.70	0.658450704225352	9.5	5-9,783-779;11-21,778-768	1-4,787-784[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	CAAUGGAUCCU-UAUUUCUAC&AAAUAAAUAUAGGAUCCGUUG	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN4048_c0_g1_779_TPlot.pdf
TRINITY_DN4049_c0_g1:2388	si_a543	TRINITY_DN4049_c0_g1	2376	2397	2388	-28.70	-18.90	0.658536585365854	7	1-10,2397-2388;11-13,2386-2384;15-21,2382-2376	x-x,2387-2387[BULt];14-14,2383-2383[SIL]	(((((((.(((.((((((((((&))))))))))-))).)))))))	GAGGAGAAGGAUUUGAAUCGGU&AUCGGUUCAA-UCUAUUUCUUU	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN4049_c0_g1_2388_TPlot.pdf
TRINITY_DN4049_c0_g1:848	si_s163	TRINITY_DN4049_c0_g1	836	857	848	-38.60	-26.80	0.694300518134715	7	1-3,857-855;5-5,853-853;7-12,851-846;13-20,844-837	4-4,854-854[SIL];6-6,852-852[SIL];x-x,845-845[BULt];21-21,836-836[UP3]	.((((((((.((((((.(.(((&))).).))))))-)))))))).	CUCUUUACCACCUGGCGAAGAA&UUCAUGGCCAGG-GGUAAAGAU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s163_TRINITY_DN4049_c0_g1_848_TPlot.pdf
TRINITY_DN404_c1_g1:2745	si_s741	TRINITY_DN404_c1_g1	2734	2756	2745	-33.80	-23.50	0.695266272189349	7	1-6,2756-2751;7-13,2748-2742;16-21,2739-2734	x-x,2750-2749[BULt];14-15,2741-2740[SIL]	((((((..(((((((..((((((&))))))--)))))))..))))))	UUAAGGCAAAUCUGUAAUCACCC&GGGUGA--AUAGAUUGACCUUAA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN404_c1_g1_2745_TPlot.pdf
TRINITY_DN404_c1_g1:2789	si_a495	TRINITY_DN404_c1_g1	2778	2797	2789	-31.90	-21.00	0.658307210031348	8	2-6,2796-2792;9-21,2790-2778	1-1,2797-2797[UP5];7-8,2791-2791[AILq]	(((((((((((((.-(((((.&.)))))..)))))))))))))	GGAAGACGAGGGAA-ACAUAG&AUAUGUCGUUUUUCGUCUUCC	3	0.999999999949324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN404_c1_g1_2789_TPlot.pdf
TRINITY_DN404_c1_g1:2935	si_a222	TRINITY_DN404_c1_g1	2923	2944	2935	-25.20	-17.40	0.69047619047619	8	1-10,2944-2935;11-16,2933-2928	x-x,2934-2934[BULt];17-21,2927-2923[UP3]	.....((((((.((((((((((&))))))))))-)))))).....	GGCGAAGAAGCGAUGAGUUUAA&UUAAACUCAU-GUUUCUAUAAU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN404_c1_g1_2935_TPlot.pdf
TRINITY_DN404_c1_g1:2937	si_a220	TRINITY_DN404_c1_g1	2925	2946	2937	-25.10	-17.40	0.693227091633466	8.5	3-12,2944-2935;13-18,2933-2928	1-2,2946-2945[UP5];x-x,2934-2934[BULt];19-21,2927-2925[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	CGAAGAAGCGAUGAGUUUAAAA&AAUUAAACUCAU-GUUUCUAUA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN404_c1_g1_2937_TPlot.pdf
TRINITY_DN404_c1_g1:2938	si_a219	TRINITY_DN404_c1_g1	2926	2947	2938	-25.10	-17.40	0.693227091633466	8.5	4-13,2944-2935;14-19,2933-2928	1-3,2947-2945[UP5];x-x,2934-2934[BULt];20-21,2927-2926[UP3]	..((((((.((((((((((...&...))))))))))-))))))..	GAAGAAGCGAUGAGUUUAAAAG&UAAUUAAACUCAU-GUUUCUAU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN404_c1_g1_2938_TPlot.pdf
TRINITY_DN404_c1_g1:3050	si_a68	TRINITY_DN404_c1_g1	3038	3059	3050	-25.40	-18.30	0.720472440944882	9	1-10,3059-3050;13-20,3046-3039	11-12,3049-3047[AILt];21-21,3038-3038[UP3]	.((((((((...((((((((((&))))))))))-..)))))))).	AGGAAAACGUUAUUGAAAGAGG&CUUCUUUCAA-AUUGUUUUUCA	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN404_c1_g1_3050_TPlot.pdf
TRINITY_DN404_c1_g1:3051	si_a67	TRINITY_DN404_c1_g1	3039	3060	3051	-27.20	-18.00	0.661764705882353	8	2-11,3059-3050;14-21,3046-3039	1-1,3060-3060[UP5];12-13,3049-3047[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	GGAAAACGUUAUUGAAAGAGGA&GCUUCUUUCAA-AUUGUUUUUC	2	0.999999942864456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN404_c1_g1_3051_TPlot.pdf
TRINITY_DN4050_c0_g1:4033	si_a286	TRINITY_DN4050_c0_g1	4024	4042	4033	-28.30	-18.80	0.664310954063604	6	2-11,4041-4032;14-21,4031-4024	1-1,4042-4042[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	UUUUUUAA--CCGAGUGAUCA&AGAUCGCUUGGAUUUAAAAAA	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN4050_c0_g1_4033_TPlot.pdf
TRINITY_DN4051_c0_g1:111	si_a501	TRINITY_DN4051_c0_g1	98	120	111	-33.50	-21.80	0.650746268656716	13.5	2-3,119-118;5-12,116-109;13-19,106-100	1-1,120-120[UP5];4-4,117-117[SIL];x-x,108-107[BULt];20-21,99-98[UP3]	..(((((((..((((((((.((.&.)).))))))))--)))))))..	CGCCGAGGAUCGGACGGAGCGCA&CGUUUUUCGUCU--UCCUUGGAA	4	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4051_c0_g1_111_TPlot.pdf
TRINITY_DN4051_c0_g1:1642	si_a654	TRINITY_DN4051_c0_g1	1631	1651	1642	-31.70	-22.80	0.719242902208202	6.5	1-12,1651-1640;15-20,1637-1632	13-14,1639-1638[SIL];21-21,1631-1631[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	UAUGGGCCAUUCCUGGUAUGU&AUAUAUCGGGAAAUGCCUAUU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a654_TRINITY_DN4051_c0_g1_1642_TPlot.pdf
TRINITY_DN4051_c0_g1:1643	si_a653	TRINITY_DN4051_c0_g1	1632	1652	1643	-31.70	-23.10	0.728706624605678	6.5	2-13,1651-1640;16-21,1637-1632	1-1,1652-1652[UP5];14-15,1639-1638[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	AUGGGCCAUUCCUGGUAUGUG&AAUAUAUCGGGAAAUGCCUAU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a653_TRINITY_DN4051_c0_g1_1643_TPlot.pdf
TRINITY_DN4051_c0_g1:1644	si_a652	TRINITY_DN4051_c0_g1	1633	1653	1644	-31.90	-22.10	0.692789968652038	8.5	3-14,1651-1640;17-21,1637-1633	1-2,1653-1652[UP5];15-16,1639-1638[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	UGGGCCAUUCCUGGUAUGUGA&UAAUAUAUCGGGAAAUGCCUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN4051_c0_g1_1644_TPlot.pdf
TRINITY_DN4051_c0_g1:165	si_a19	TRINITY_DN4051_c0_g1	154	175	165	-27.00	-18.50	0.685185185185185	8	2-5,174-171;6-8,169-167;10-21,165-154	1-1,175-175[UP5];x-x,170-170[BULt];9-9,166-166[SIL]	((((((((((((.(((.((((.&.))))-))).))))))))))))	AGGGCUGGAGAUUAAUGAGGCG&AGCCU-AUUUAUUUUUAGUUCU	3	0.999463646079035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4051_c0_g1_165_TPlot.pdf
TRINITY_DN4051_c0_g1:2395	si_s646	TRINITY_DN4051_c0_g1	2383	2404	2395	-38.80	-26.70	0.688144329896907	7	1-10,2404-2395;12-15,2394-2391;16-20,2388-2384	11-11,x-x[BULq];x-x,2390-2389[BULt];21-21,2383-2383[UP3]	.(((((..((((-((((((((((&)))))))))).))))--))))).	GCCGGUGCUGUG-CGAGGGCAAG&UUUGCCCUCGAUACA--AUCGGG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s646_TRINITY_DN4051_c0_g1_2395_TPlot.pdf
TRINITY_DN4051_c0_g1:2400	si_s641	TRINITY_DN4051_c0_g1	2390	2409	2400	-39.20	-26.00	0.663265306122449	7.5	2-3,2408-2407;5-15,2405-2395;17-20,2394-2391	1-1,2409-2409[UP5];4-4,2406-2406[SIL];16-16,x-x[BULq];21-21,2390-2390[UP3]	.((((-(((((((((((.((.&.)).))))))))))).)))).	CUGUG-CGAGGGCAAGCUCUA&AGGCGUUUGCCCUCGAUACAA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN4051_c0_g1_2400_TPlot.pdf
TRINITY_DN4051_c0_g1:2402	si_s639	TRINITY_DN4051_c0_g1	2392	2410	2402	-40.60	-28.40	0.699507389162561	5.5	1-5,2410-2406;7-17,2405-2395;19-21,2394-2392	6-6,x-x[BULq];18-18,x-x[BULq]	(((-(((((((((((-(((((&))))).))))))))))).)))	GUG-CGAGGGCAAGC-UCUAC&GUAGGCGUUUGCCCUCGAUAC	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN4051_c0_g1_2402_TPlot.pdf
TRINITY_DN4051_c0_g1:2406	si_s635	TRINITY_DN4051_c0_g1	2395	2414	2406	-39.80	-26.90	0.675879396984925	11	5-9,2410-2406;11-21,2405-2395	1-4,2414-2411[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	CGAGGGCAAGC-UCUACAGUC&UUUCGUAGGCGUUUGCCCUCG	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN4051_c0_g1_2406_TPlot.pdf
TRINITY_DN4051_c0_g1:2456	si_a113	TRINITY_DN4051_c0_g1	2445	2465	2456	-26.20	-17.70	0.675572519083969	13.5	6-17,2460-2449	1-5,2465-2461[UP5];18-21,2448-2445[UP3]	....((((((((((((.....&.....))))))))))))....	CAUCAGACAAGCUCGUCCUAU&AAAAUACGAGCUUGUUUUAUA	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN4051_c0_g1_2456_TPlot.pdf
TRINITY_DN4051_c0_g1:2458	si_a111	TRINITY_DN4051_c0_g1	2447	2467	2458	-26.20	-17.70	0.675572519083969	15.5	8-19,2460-2449	1-7,2467-2461[UP5];20-21,2448-2447[UP3]	..((((((((((((.......&.......))))))))))))..	UCAGACAAGCUCGUCCUAUUA&AUAAAAUACGAGCUUGUUUUA	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN4051_c0_g1_2458_TPlot.pdf
TRINITY_DN4051_c0_g1:2474	si_a637	TRINITY_DN4051_c0_g1	2462	2485	2474	-25.80	-18.30	0.709302325581395	7	1-5,2485-2481;6-13,2478-2471;14-20,2469-2463	x-x,2480-2479[BULt];x-x,2470-2470[BULt];21-21,2462-2462[UP3]	.(((((((.((((((((..(((((&)))))--))))))))-))))))).	CUAUUACUGCAAGAAAAAUUCGAC&GUCGA--UUUUUUUG-AGUAAUAU	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4051_c0_g1_2474_TPlot.pdf
TRINITY_DN4051_c0_g1:2475	si_a636	TRINITY_DN4051_c0_g1	2463	2486	2475	-26.30	-18.30	0.695817490494297	7	2-6,2485-2481;7-14,2478-2471;15-21,2469-2463	1-1,2486-2486[UP5];x-x,2480-2479[BULt];x-x,2470-2470[BULt]	(((((((.((((((((..(((((.&.)))))--))))))))-)))))))	UAUUACUGCAAGAAAAAUUCGACG&UGUCGA--UUUUUUUG-AGUAAUA	2	0.997190032184006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4051_c0_g1_2475_TPlot.pdf
TRINITY_DN40525_c0_g1:214	si_a761	TRINITY_DN40525_c0_g1	203	223	214	-30.10	-20.90	0.694352159468438	8	1-7,223-217;9-11,215-213;13-19,211-205	8-8,216-216[SIL];12-12,212-212[SIL];20-21,204-203[UP3]	..(((((((.(((.(((((((&))))))).))).)))))))..	UCUCGAUCGCAAAGCCAAGGG&CCUUUGGGUUUUUGAUUGAUU	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN40525_c0_g1_214_TPlot.pdf
TRINITY_DN4053_c0_g1:3154	si_a395	TRINITY_DN4053_c0_g1	3143	3163	3154	-24.70	-17.30	0.700404858299595	5.5	3-15,3161-3149;18-21,3146-3143	1-2,3163-3162[UP5];16-17,3148-3147[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	ACAAUUUAAUUCUAUAUUCAU&AAGAAUAUAGAAUUGUUUUGU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN4053_c0_g1_3154_TPlot.pdf
TRINITY_DN4055_c0_g1:10273	si_s242	TRINITY_DN4055_c0_g1	10261	10282	10273	-33.40	-21.80	0.652694610778443	8.5	2-11,10281-10272;13-17,10270-10266;18-18,10264-10264	1-1,10282-10282[UP5];12-12,10271-10271[SIL];x-x,10265-10265[BULt];19-21,10263-10261[UP3]	...(.(((((.((((((((((.&.)))))))))).)))))-)...	GAUGUGGAAGCGCCUGUUGAUA&AAUCAAUAGGCAUUUCC-CGAU	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s242_TRINITY_DN4055_c0_g1_10273_TPlot.pdf
TRINITY_DN4055_c0_g1:10453	si_a784	TRINITY_DN4055_c0_g1	10442	10462	10453	-24.70	-16.20	0.65587044534413	7.5	2-8,10461-10455;11-17,10452-10446;20-21,10443-10442	1-1,10462-10462[UP5];9-10,10454-10453[SIL];18-19,10445-10444[SIL]	((..(((((((..(((((((.&.)))))))..)))))))..))	GAUUUAGAAAACGAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4055_c0_g1_10453_TPlot.pdf
TRINITY_DN4055_c0_g1:10460	si_s811	TRINITY_DN4055_c0_g1	10449	10470	10460	-26.40	-17.30	0.65530303030303	10.5	1-8,10470-10463;9-16,10461-10454	x-x,10462-10462[BULt];17-21,10453-10449[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	AAAACGAGAAGAGAGUGAUGAA&UUCGUUAC-CUUUUCUUAAUAA	4	0.999999993467485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4055_c0_g1_10460_TPlot.pdf
TRINITY_DN4055_c0_g1:2745	si_s808	TRINITY_DN4055_c0_g1	2733	2754	2745	-28.60	-19.90	0.695804195804196	10	3-10,2752-2745;11-19,2743-2735	1-2,2754-2753[UP5];x-x,2744-2744[BULt];20-21,2734-2733[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	CAAGGAGGGGGAUGACGAAGUU&AUCUUCGUUA-CCUUUUCUUAA	3	0.999991544621683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN4055_c0_g1_2745_TPlot.pdf
TRINITY_DN4055_c0_g1:3301	si_a71	TRINITY_DN4055_c0_g1	3290	3310	3301	-23.30	-15.70	0.67381974248927	6	1-8,3310-3303;10-17,3301-3294;19-21,3292-3290	9-9,3302-3302[SIL];18-18,3293-3293[SIL]	(((.((((((((.((((((((&)))))))).)))))))).)))	UAGAGAAAGAUAUUUUGAAGG&CUUUCAAAUUGUUUUUCAUUA	2	0.999997639036914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4055_c0_g1_3301_TPlot.pdf
TRINITY_DN4055_c0_g1:3304	si_a68	TRINITY_DN4055_c0_g1	3293	3313	3304	-25.40	-17.30	0.681102362204724	8	3-11,3311-3303;13-20,3301-3294	1-2,3313-3312[UP5];12-12,3302-3302[SIL];21-21,3293-3293[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AGAAAGAUAUUUUGAAGGAUU&CUUCUUUCAAAUUGUUUUUCA	4	0.999999996762013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4055_c0_g1_3304_TPlot.pdf
TRINITY_DN4055_c0_g1:3367	si_a786	TRINITY_DN4055_c0_g1	3356	3377	3367	-26.60	-18.80	0.706766917293233	7.5	1-6,3377-3372;8-20,3369-3357	7-7,3371-3370[AILt];21-21,3356-3356[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AGAAAGUAGAAGAGAAAGAAGA&UCUUCU-AUUUUUCUAUUUUCC	3	0.999997908301714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4055_c0_g1_3367_TPlot.pdf
TRINITY_DN4055_c0_g1:3368	si_a785	TRINITY_DN4055_c0_g1	3357	3378	3368	-25.90	-19.00	0.733590733590734	7.5	2-7,3377-3372;9-21,3369-3357	1-1,3378-3378[UP5];8-8,3371-3370[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	GAAAGUAGAAGAGAAAGAAGAA&CUCUUCU-AUUUUUCUAUUUUC	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4055_c0_g1_3368_TPlot.pdf
TRINITY_DN4055_c0_g1:3375	si_s77	TRINITY_DN4055_c0_g1	3364	3384	3375	-25.50	-17.40	0.68235294117647	4.5	1-12,3384-3373;15-21,3370-3364	13-14,3372-3371[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAGAAAGAAGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4055_c0_g1_3375_TPlot.pdf
TRINITY_DN4055_c0_g1:3377	si_s72	TRINITY_DN4055_c0_g1	3365	3390	3377	-24.10	-16.60	0.688796680497925	11	1-6,3390-3385;7-18,3380-3369;19-21,3367-3365	x-x,3384-3381[BULt];x-x,3368-3368[BULt]	(((.((((((((((((....((((((&))))))----))))))))))))-)))	AAGAGAAAGAAGAAAAGAAAGUAGAA&UUCUAU----UUUUUUUCUUUC-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4055_c0_g1_3377_TPlot.pdf
TRINITY_DN4055_c0_g1:3378	si_s71	TRINITY_DN4055_c0_g1	3366	3391	3378	-25.70	-18.60	0.723735408560311	11	1-7,3391-3385;8-19,3380-3369;20-21,3367-3366	x-x,3384-3381[BULt];x-x,3368-3368[BULt]	((.((((((((((((....(((((((&)))))))----))))))))))))-))	AGAGAAAGAAGAAAAGAAAGUAGAAG&CUUCUAU----UUUUUUUCUUUC-CU	3	0.999999999950339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4055_c0_g1_3378_TPlot.pdf
TRINITY_DN4055_c0_g1:3379	si_s70	TRINITY_DN4055_c0_g1	3368	3392	3379	-25.80	-17.80	0.689922480620155	11.5	2-8,3391-3385;9-20,3380-3369	1-1,3392-3392[UP5];x-x,3384-3381[BULt];21-21,3368-3368[UP3]	.((((((((((((....(((((((.&.)))))))----)))))))))))).	AGAAAGAAGAAAAGAAAGUAGAAGA&ACUUCUAU----UUUUUUUCUUUCC	2	0.999999999059932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4055_c0_g1_3379_TPlot.pdf
TRINITY_DN4055_c0_g1:3380	si_s69	TRINITY_DN4055_c0_g1	3369	3393	3380	-23.40	-17.80	0.760683760683761	12.5	3-9,3391-3385;10-21,3380-3369	1-2,3393-3392[UP5];x-x,3384-3381[BULt]	((((((((((((....(((((((..&..)))))))----))))))))))))	GAAAGAAGAAAAGAAAGUAGAAGAG&AACUUCUAU----UUUUUUUCUUUC	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4055_c0_g1_3380_TPlot.pdf
TRINITY_DN4055_c0_g1:3382	si_s79	TRINITY_DN4055_c0_g1	3371	3392	3382	-26.20	-17.40	0.66412213740458	6	1-6,3392-3387;7-11,3385-3381;13-21,3379-3371	x-x,3386-3386[BULt];12-12,3380-3380[SIL]	(((((((((.(((((.((((((&))))))-))))).)))))))))	AAGAAGAAAAGAAAGUAGAAGA&UUUUUU-CUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4055_c0_g1_3382_TPlot.pdf
TRINITY_DN4055_c0_g1:3385	si_s68	TRINITY_DN4055_c0_g1	3373	3394	3385	-23.10	-16.20	0.701298701298701	8	4-17,3391-3378;18-21,3376-3373	1-3,3394-3392[UP5];x-x,3377-3377[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	GAAGAAAAGAAAGUAGAAGAGA&CAACUUCUAUUUUUUUU-CUUU	3	0.99999999990116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4055_c0_g1_3385_TPlot.pdf
TRINITY_DN4055_c0_g1:3389	si_s899	TRINITY_DN4055_c0_g1	3377	3398	3389	-28.30	-18.40	0.65017667844523	9.5	1-11,3398-3388;14-17,3384-3381	12-13,3387-3385[AILt];18-21,3380-3377[UP3]	....((((...(((((((((((&)))))))))))-..))))....	AAAAGAAAGUAGAAGAGAAAGU&GCUUUCUCUUC-AAUUUCAAUU	4	0.999999999999842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4055_c0_g1_3389_TPlot.pdf
TRINITY_DN4055_c0_g1:3441	si_s69	TRINITY_DN4055_c0_g1	3429	3450	3441	-23.40	-16.30	0.696581196581197	7.5	3-16,3448-3435;17-20,3433-3430	1-2,3450-3449[UP5];x-x,3434-3434[BULt];21-21,3429-3429[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	AAAAGAAGAAGAAAUAGAGGGG&AACUUCUAUUUUUUUU-CUUUC	2	0.999999999994285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4055_c0_g1_3441_TPlot.pdf
TRINITY_DN4055_c0_g1:3442	si_s68	TRINITY_DN4055_c0_g1	3430	3451	3442	-23.10	-16.30	0.705627705627706	8	4-17,3448-3435;18-21,3433-3430	1-3,3451-3449[UP5];x-x,3434-3434[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	AAAGAAGAAGAAAUAGAGGGGA&CAACUUCUAUUUUUUUU-CUUU	2	0.999997808924038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4055_c0_g1_3442_TPlot.pdf
TRINITY_DN4055_c0_g1:3538	si_s76	TRINITY_DN4055_c0_g1	3524	3547	3538	-23.60	-15.70	0.665254237288135	12	2-11,3546-3537;12-19,3533-3526	1-1,3547-3547[UP5];x-x,3536-3534[BULt];20-21,3525-3524[UP3]	..((((((((...((((((((((.&.))))))))))---))))))))..	AUGAAGGGGAGCUAGGAGAAAAAG&AUUUUUUUUCU---UUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4055_c0_g1_3538_TPlot.pdf
TRINITY_DN4055_c0_g1:3575	si_s84	TRINITY_DN4055_c0_g1	3564	3585	3575	-32.30	-21.92	0.678637770897833	9.5	1-9,3585-3577;13-21,3572-3564	10-12,3576-3573[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	UGAAGAAGACCUUAAGGAAGGA&UCUUUCCUU-UCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4055_c0_g1_3575_TPlot.pdf
TRINITY_DN4055_c0_g1:3577	si_s83	TRINITY_DN4055_c0_g1	3565	3586	3577	-30.90	-21.62	0.699676375404531	8.5	1-10,3586-3577;14-21,3572-3565	11-13,3576-3573[AILt]	((((((((....((((((((((&))))))))))-...))))))))	GAAGAAGACCUUAAGGAAGGAG&UUCUUUCCUU-UCUUCUUCUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4055_c0_g1_3577_TPlot.pdf
TRINITY_DN4055_c0_g1:6079	si_a149	TRINITY_DN4055_c0_g1	6067	6088	6079	-29.40	-20.00	0.680272108843537	10	1-2,6088-6087;4-11,6085-6078;12-18,6076-6070	3-3,6086-6086[SIL];x-x,6077-6077[BULt];19-21,6069-6067[UP3]	...(((((((.((((((((.((&)).))))))))-)))))))...	AAAGACCUUGAAGACGACAUCG&CGUUGUUGUUU-UAAGGUCAAU	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN4055_c0_g1_6079_TPlot.pdf
TRINITY_DN4055_c0_g1:6177	si_a489	TRINITY_DN4055_c0_g1	6165	6186	6177	-27.70	-19.20	0.693140794223827	5	1-8,6186-6179;10-16,6177-6171;17-20,6169-6166	9-9,6178-6178[SIL];x-x,6170-6170[BULt];21-21,6165-6165[UP3]	.((((.(((((((.((((((((&)))))))).)))))))-)))).	AGAAAUAACGACAGAUUCUGUA&UAUAGAAUAUGUCGUU-UUUCG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN4055_c0_g1_6177_TPlot.pdf
TRINITY_DN4055_c0_g1:6178	si_a488	TRINITY_DN4055_c0_g1	6166	6187	6178	-26.40	-19.80	0.75	4	1-9,6187-6179;11-17,6177-6171;18-21,6169-6166	10-10,6178-6178[SIL];x-x,6170-6170[BULt]	((((.(((((((.(((((((((&))))))))).)))))))-))))	GAAAUAACGACAGAUUCUGUAU&AUAUAGAAUAUGUCGUU-UUUC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN4055_c0_g1_6178_TPlot.pdf
TRINITY_DN4055_c0_g1:6179	si_a487	TRINITY_DN4055_c0_g1	6168	6188	6179	-24.80	-17.50	0.705645161290323	7	2-10,6187-6179;12-18,6177-6171	1-1,6188-6188[UP5];11-11,6178-6178[SIL];19-21,6170-6168[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	AAUAACGACAGAUUCUGUAUC&UAUAUAGAAUAUGUCGUUUUU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN4055_c0_g1_6179_TPlot.pdf
TRINITY_DN4055_c0_g1:6180	si_a486	TRINITY_DN4055_c0_g1	6169	6189	6180	-24.90	-17.50	0.70281124497992	8	3-11,6187-6179;13-19,6177-6171	1-2,6189-6188[UP5];12-12,6178-6178[SIL];20-21,6170-6169[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	AUAACGACAGAUUCUGUAUCA&UUAUAUAGAAUAUGUCGUUUU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN4055_c0_g1_6180_TPlot.pdf
TRINITY_DN4055_c0_g1:6285	si_a785	TRINITY_DN4055_c0_g1	6274	6294	6285	-25.90	-17.50	0.675675675675676	4.5	1-8,6294-6287;10-13,6285-6282;15-21,6280-6274	9-9,6286-6286[SIL];14-14,6281-6281[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	GAAGAUAAAAAACUAGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4055_c0_g1_6285_TPlot.pdf
TRINITY_DN4055_c0_g1:6295	si_s894	TRINITY_DN4055_c0_g1	6284	6304	6295	-29.10	-19.00	0.652920962199313	14.5	5-16,6300-6289	1-4,6304-6301[UP5];17-21,6288-6284[UP3]	.....((((((((((((....&....)))))))))))).....	AACUAGAGGAGAAGGCUAAUA&AAUAGGCUUUCUCUUCAAUUU	4	0.999999999901096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4055_c0_g1_6295_TPlot.pdf
TRINITY_DN4055_c0_g1:6734	si_a153	TRINITY_DN4055_c0_g1	6724	6743	6734	-28.70	-18.90	0.658536585365854	6.5	1-15,6743-6729;17-21,6728-6724	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	GUAGA-UGAUUUUGAAAUAGC&GUUGUUUUAAGGUCAAUCUAU	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN4055_c0_g1_6734_TPlot.pdf
TRINITY_DN4055_c0_g1:7752	si_a69	TRINITY_DN4055_c0_g1	7741	7761	7752	-24.00	-16.40	0.683333333333333	7.5	2-15,7760-7747	1-1,7761-7761[UP5];16-21,7746-7741[UP3]	......((((((((((((((.&.))))))))))))))......	AUUUAUGACAAUUUGAAAGAU&UUCUUUCAAAUUGUUUUUCAU	2	0.999983338261388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN4055_c0_g1_7752_TPlot.pdf
TRINITY_DN4055_c0_g1:8711	si_s75	TRINITY_DN4055_c0_g1	8699	8720	8711	-24.00	-15.70	0.654166666666667	12	6-14,8715-8707;15-20,8705-8700	1-5,8720-8716[UP5];x-x,8706-8706[BULt];21-21,8699-8699[UP3]	.((((((.(((((((((.....&.....)))))))))-)))))).	CGAAAGGAAAAGAAGAACUAUU&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4055_c0_g1_8711_TPlot.pdf
TRINITY_DN40561_c0_g1:2243	si_a21	TRINITY_DN40561_c0_g1	2232	2251	2243	-24.30	-18.00	0.740740740740741	5	2-3,2250-2249;5-21,2248-2232	1-1,2251-2251[UP5];4-4,x-x[BULq]	(((((((((((((((((-((.&.)).)))))))))))))))))	UUAGAACUAAAGAUAAG-AGA&CCUAUUUAUUUUUAGUUCUAA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN40561_c0_g1_2243_TPlot.pdf
TRINITY_DN40561_c0_g1:2414	si_a788	TRINITY_DN40561_c0_g1	2403	2426	2414	-24.80	-16.60	0.669354838709677	10.5	1-8,2426-2419;9-14,2415-2410;16-19,2408-2405	x-x,2418-2416[BULt];15-15,2409-2409[SIL];20-21,2404-2403[UP3]	..((((.((((((...((((((((&))))))))---)))))).))))..	AAGGAAUGUAGAAAAAGAAUAGAA&UUCUAUUU---UUCUAUUUUCCAA	4	0.999999999999106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN40561_c0_g1_2414_TPlot.pdf
TRINITY_DN40561_c0_g1:2418	si_s71	TRINITY_DN40561_c0_g1	2404	2427	2418	-25.70	-22.50	0.875486381322957	4	1-16,2427-2412;17-21,2408-2404	x-x,2411-2409[BULt]	(((((...((((((((((((((((&))))))))))))))))---)))))	AGGAAUGUAGAAAAAGAAUAGAAG&CUUCUAUUUUUUUUCU---UUCCU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN40561_c0_g1_2418_TPlot.pdf
TRINITY_DN4056_c0_g1:232	si_a194	TRINITY_DN4056_c0_g1	221	241	232	-29.40	-21.40	0.727891156462585	10.5	1-13,241-229	14-21,228-221[UP3]	........(((((((((((((&)))))))))))))........	GAAAAGCCGUGAGCAGGGGAG&UUUCCCUGUUCACUAAUAAAU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN4056_c0_g1_232_TPlot.pdf
TRINITY_DN4056_c0_g1:233	si_a193	TRINITY_DN4056_c0_g1	222	242	233	-30.90	-21.50	0.6957928802589	11	2-14,241-229	1-1,242-242[UP5];15-21,228-222[UP3]	.......(((((((((((((.&.))))))))))))).......	AAAAGCCGUGAGCAGGGGAGC&CUUUCCCUGUUCACUAAUAAA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN4056_c0_g1_233_TPlot.pdf
TRINITY_DN4056_c0_g1:236	si_a190	TRINITY_DN4056_c0_g1	225	245	236	-32.00	-22.40	0.7	9.5	1-3,245-243;5-17,241-229	4-4,242-242[SIL];18-21,228-225[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AGCCGUGAGCAGGGGAGCGUA&UAUCUUUCCCUGUUCACUAAU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN4056_c0_g1_236_TPlot.pdf
TRINITY_DN4056_c0_g1:691	si_s77	TRINITY_DN4056_c0_g1	679	700	691	-25.50	-18.20	0.713725490196078	8.5	1-11,700-690;12-18,688-682	x-x,689-689[BULt];19-21,681-679[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	CUCGGAAGGACGAGAAGAAAGA&UUUUUUUUCUU-UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4056_c0_g1_691_TPlot.pdf
TRINITY_DN4056_c0_g1:695	si_s73	TRINITY_DN4056_c0_g1	683	705	695	-24.00	-17.40	0.725	8	1-3,705-703;5-15,700-690;16-21,688-683	4-4,702-701[AILt];x-x,689-689[BULt]	((((((.(((((((((((..(((&)))-.)))))))))))-))))))	GAAGGACGAGAAGAAAGAGAAGA&UCU-AUUUUUUUUCUU-UCCUUU	3	0.999999999999691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4056_c0_g1_695_TPlot.pdf
TRINITY_DN4056_c0_g1:698	si_s70	TRINITY_DN4056_c0_g1	686	708	698	-25.80	-19.10	0.74031007751938	7	1-6,708-703;8-18,700-690;19-21,688-686	7-7,702-701[AILt];x-x,689-689[BULt]	(((.(((((((((((..((((((&))))))-.)))))))))))-)))	GGACGAGAAGAAAGAGAAGAAGU&ACUUCU-AUUUUUUUUCUU-UCC	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4056_c0_g1_698_TPlot.pdf
TRINITY_DN4059_c0_g1:1547	si_s84	TRINITY_DN4059_c0_g1	1535	1556	1547	-32.30	-21.10	0.653250773993808	4.5	1-6,1556-1551;8-14,1549-1543;15-21,1541-1535	7-7,1550-1550[SIL];x-x,1542-1542[BULt]	(((((((.(((((((.((((((&)))))).)))))))-)))))))	CGGAGGAUGAAGAAACGAAAGG&UCUUUCCUUUCUUC-UUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4059_c0_g1_1547_TPlot.pdf
TRINITY_DN4059_c0_g1:1695	si_s70	TRINITY_DN4059_c0_g1	1684	1706	1695	-25.80	-17.48	0.677519379844961	12.5	2-6,1705-1701;9-21,1696-1684	1-1,1706-1706[UP5];7-8,1700-1697[AILt]	(((((((((((((....(((((.&.)))))--..)))))))))))))	GGAGAGAAAGGAGCUGAAGAAGA&ACUUCU--AUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4059_c0_g1_1695_TPlot.pdf
TRINITY_DN4059_c0_g1:1697	si_s77	TRINITY_DN4059_c0_g1	1686	1707	1697	-25.50	-18.60	0.729411764705882	9	1-9,1707-1699;11-20,1696-1687	10-10,1698-1697[AILt];21-21,1686-1686[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	AGAGAAAGGAGCUGAAGAAGAG&UUUUUUUUC-UUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4059_c0_g1_1697_TPlot.pdf
TRINITY_DN4059_c0_g1:1701	si_s92	TRINITY_DN4059_c0_g1	1689	1710	1701	-34.90	-23.00	0.659025787965616	8.5	1-12,1710-1699;13-17,1697-1693	x-x,1698-1698[BULt];18-21,1692-1689[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	GAAAGGAGCUGAAGAAGAGGGA&UUCUUCUUCUUC-GCUUCGGAU	3	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4059_c0_g1_1701_TPlot.pdf
TRINITY_DN4059_c0_g1:1702	si_s76	TRINITY_DN4059_c0_g1	1687	1711	1702	-23.60	-18.90	0.800847457627119	12.5	1-12,1711-1700;13-21,1695-1687	x-x,1699-1696[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	GAGAAAGGAGCUGAAGAAGAGGGAU&AUUUUUUUUCUU----UCCUUUCUU	2	0.999926725936868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4059_c0_g1_1702_TPlot.pdf
TRINITY_DN4059_c0_g1:1703	si_s75	TRINITY_DN4059_c0_g1	1688	1712	1703	-24.00	-17.80	0.741666666666667	9	2-13,1711-1700;14-21,1695-1688	1-1,1712-1712[UP5];x-x,1699-1696[BULt]	((((((((....((((((((((((.&.))))))))))))----))))))))	AGAAAGGAGCUGAAGAAGAGGGAUC&UAUUUUUUUUCUU----UCCUUUCU	2	0.999999953760155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4059_c0_g1_1703_TPlot.pdf
TRINITY_DN4059_c0_g1:1704	si_s74	TRINITY_DN4059_c0_g1	1689	1713	1704	-25.00	-16.50	0.66	11	3-14,1711-1700;15-21,1695-1689	1-2,1713-1712[UP5];x-x,1699-1696[BULt]	(((((((....((((((((((((..&..))))))))))))----)))))))	GAAAGGAGCUGAAGAAGAGGGAUCU&CUAUUUUUUUUCUU----UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4059_c0_g1_1704_TPlot.pdf
TRINITY_DN4059_c0_g1:1705	si_s88	TRINITY_DN4059_c0_g1	1693	1714	1705	-34.80	-22.80	0.655172413793104	10.5	5-16,1710-1699;17-21,1697-1693	1-4,1714-1711[UP5];x-x,1698-1698[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	GGAGCUGAAGAAGAGGGAUCUG&UCCUUUCUUCUUCUUC-GCUUC	2	0.999999999994891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4059_c0_g1_1705_TPlot.pdf
TRINITY_DN4059_c0_g1:1710	si_s80	TRINITY_DN4059_c0_g1	1699	1722	1710	-28.20	-19.24	0.682269503546099	10.5	1-9,1722-1714;11-21,1709-1699	10-10,1713-1710[AILt]	(((((((((((....(((((((((&)))))))))---.)))))))))))	GAAGAAGAGGGAUCUGAAGAAAAA&UUUUUCUUU---CCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4059_c0_g1_1710_TPlot.pdf
TRINITY_DN4059_c0_g1:1739	si_a785	TRINITY_DN4059_c0_g1	1729	1749	1739	-25.90	-18.20	0.702702702702703	5.5	1-7,1749-1743;8-15,1741-1734;17-21,1733-1729	x-x,1742-1742[BULt];16-16,x-x[BULq]	(((((-((((((((.(((((((&)))))))-)))))))).)))))	GAGGA-GGAGAAAUCAGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	2	0.999994564445198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4059_c0_g1_1739_TPlot.pdf
TRINITY_DN4059_c0_g1:1740	si_s68	TRINITY_DN4059_c0_g1	1729	1750	1740	-23.10	-15.60	0.675324675324675	9.5	4-8,1747-1743;9-21,1741-1729	1-3,1750-1748[UP5];x-x,1742-1742[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GAGGAGGAGAAAUCAGAAGAGA&CAACUUCU-AUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4059_c0_g1_1740_TPlot.pdf
TRINITY_DN4059_c0_g1:1762	si_s807	TRINITY_DN4059_c0_g1	1746	1771	1762	-28.90	-19.60	0.678200692041523	9.5	1-10,1771-1762;12-16,1760-1756;17-20,1750-1747	11-11,1761-1761[SIL];x-x,1755-1751[BULt];21-21,1746-1746[UP3]	.((((.....(((((.((((((((((&)))))))))).)))))-----)))).	AGAGAGCUCUAAAGGCGACGAAGAUA&UAUCUUCGUUACCUUU-----UCUUA	3	0.999999940687976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4059_c0_g1_1762_TPlot.pdf
TRINITY_DN4059_c0_g1:1763	si_s806	TRINITY_DN4059_c0_g1	1747	1772	1763	-28.60	-19.80	0.692307692307692	8.5	1-11,1772-1762;13-17,1760-1756;18-21,1750-1747	12-12,1761-1761[SIL];x-x,1755-1751[BULt]	((((.....(((((.(((((((((((&))))))))))).)))))-----))))	GAGAGCUCUAAAGGCGACGAAGAUAA&UUAUCUUCGUUACCUUU-----UCUU	2	0.999829191196717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN4059_c0_g1_1763_TPlot.pdf
TRINITY_DN4059_c0_g1:1764	si_s805	TRINITY_DN4059_c0_g1	1753	1773	1764	-28.60	-19.10	0.667832167832168	6	2-12,1772-1762;14-18,1760-1756	1-1,1773-1773[UP5];13-13,1761-1761[SIL];19-21,1755-1753[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	UCUAAAGGCGACGAAGAUAAC&UUUAUCUUCGUUACCUUUUCU	3	0.999999999083711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4059_c0_g1_1764_TPlot.pdf
TRINITY_DN4059_c0_g1:1765	si_s804	TRINITY_DN4059_c0_g1	1754	1774	1765	-27.90	-19.10	0.684587813620072	6.5	3-13,1772-1762;15-19,1760-1756	1-2,1774-1773[UP5];14-14,1761-1761[SIL];20-21,1755-1754[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	CUAAAGGCGACGAAGAUAACG&UUUUAUCUUCGUUACCUUUUC	2	0.99986176428727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4059_c0_g1_1765_TPlot.pdf
TRINITY_DN4059_c0_g1:1766	si_s803	TRINITY_DN4059_c0_g1	1755	1775	1766	-26.00	-19.10	0.734615384615385	7.5	4-14,1772-1762;16-20,1760-1756	1-3,1775-1773[UP5];15-15,1761-1761[SIL];21-21,1755-1755[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	UAAAGGCGACGAAGAUAACGC&AUUUUAUCUUCGUUACCUUUU	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN4059_c0_g1_1766_TPlot.pdf
TRINITY_DN4059_c0_g1:1767	si_s802	TRINITY_DN4059_c0_g1	1756	1776	1767	-26.40	-19.10	0.723484848484849	8.5	5-15,1772-1762;17-21,1760-1756	1-4,1776-1773[UP5];16-16,1761-1761[SIL]	(((((.(((((((((((....&....))))))))))).)))))	AAAGGCGACGAAGAUAACGCU&UAUUUUAUCUUCGUUACCUUU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN4059_c0_g1_1767_TPlot.pdf
TRINITY_DN4059_c0_g1:1768	si_s801	TRINITY_DN4059_c0_g1	1757	1777	1768	-28.20	-18.40	0.652482269503546	10.5	6-16,1772-1762;18-21,1760-1757	1-5,1777-1773[UP5];17-17,1761-1761[SIL]	((((.(((((((((((.....&.....))))))))))).))))	AAGGCGACGAAGAUAACGCUU&GUAUUUUAUCUUCGUUACCUU	3	0.999999973068369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN4059_c0_g1_1768_TPlot.pdf
TRINITY_DN4059_c0_g1:548	si_a795	TRINITY_DN4059_c0_g1	536	557	548	-30.20	-20.20	0.66887417218543	6	1-13,557-545;16-18,541-539;20-21,537-536	14-15,544-542[AILt];19-19,538-538[SIL]	((.(((...(((((((((((((&)))))))))))))-..))).))	CUACGGUAGUGGAAAGUAGAGA&UUUCUAUUUUCCA-AUCCGAAG	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN4059_c0_g1_548_TPlot.pdf
TRINITY_DN4059_c0_g1:551	si_a792	TRINITY_DN4059_c0_g1	539	560	551	-27.60	-21.10	0.764492753623188	6	2-16,559-545;19-21,541-539	1-1,560-560[UP5];17-18,544-542[AILt]	(((...(((((((((((((((.&.)))))))))))))))-..)))	CGGUAGUGGAAAGUAGAGAAAG&AUUUUUCUAUUUUCCA-AUCCG	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN4059_c0_g1_551_TPlot.pdf
TRINITY_DN4059_c0_g1:553	si_a790	TRINITY_DN4059_c0_g1	542	562	553	-25.80	-17.60	0.682170542635659	10	4-18,559-545	1-3,562-560[UP5];19-21,544-542[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAGUGGAAAGUAGAGAAAGUU&CUAUUUUUCUAUUUUCCAAUC	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4059_c0_g1_553_TPlot.pdf
TRINITY_DN4059_c0_g1:556	si_a787	TRINITY_DN4059_c0_g1	545	565	556	-26.30	-17.40	0.661596958174905	12.5	7-21,559-545	1-6,565-560[UP5]	(((((((((((((((......&......)))))))))))))))	UGGAAAGUAGAGAAAGUUGGU&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4059_c0_g1_556_TPlot.pdf
TRINITY_DN405_c0_g1:173	si_a407	TRINITY_DN405_c0_g1	162	182	173	-19.80	-13.10	0.661616161616162	8	1-13,182-170	14-21,169-162[UP3]	........(((((((((((((&)))))))))))))........	CGCAGCAAAUAAACAAAACAA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN405_c0_g1_173_TPlot.pdf
TRINITY_DN405_c0_g1:174	si_a406	TRINITY_DN405_c0_g1	163	183	174	-19.80	-13.10	0.661616161616162	8	2-14,182-170	1-1,183-183[UP5];15-21,169-163[UP3]	.......(((((((((((((.&.))))))))))))).......	GCAGCAAAUAAACAAAACAAG&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN405_c0_g1_174_TPlot.pdf
TRINITY_DN405_c0_g1:175	si_a405	TRINITY_DN405_c0_g1	164	184	175	-19.80	-13.10	0.661616161616162	9	3-15,182-170	1-2,184-183[UP5];16-21,169-164[UP3]	......(((((((((((((..&..)))))))))))))......	CAGCAAAUAAACAAAACAAGA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN405_c0_g1_175_TPlot.pdf
TRINITY_DN405_c0_g1:398	si_a317	TRINITY_DN405_c0_g1	383	407	398	-24.30	-16.30	0.670781893004115	13.5	1-3,407-405;6-11,402-397;12-21,392-383	4-5,404-403[SIL];x-x,396-393[BULt]	((((((((((....((((((..(((&)))..))))))----))))))))))	UGAAAAAAUCUCGUGUGGAUUUAUC&GAUUUAUCCAU----GAUUUUUUUA	3	0.999999983764423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN405_c0_g1_398_TPlot.pdf
TRINITY_DN40609_c0_g1:380	si_s79	TRINITY_DN40609_c0_g1	369	390	380	-26.20	-20.60	0.786259541984733	7	2-9,389-382;11-21,379-369	1-1,390-390[UP5];10-10,381-380[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	AAGAAGAAAGGCUAAGGAAGAU&UUUUUUCUU-UCCUUUCUUCUU	0	0.290861240948276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN40609_c0_g1_380_TPlot.pdf
TRINITY_DN40609_c0_g1:382	si_s78	TRINITY_DN40609_c0_g1	370	391	382	-26.20	-19.90	0.759541984732824	9	3-10,389-382;12-21,379-370	1-2,391-390[UP5];11-11,381-380[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	AGAAGAAAGGCUAAGGAAGAUA&UUUUUUUCUU-UCCUUUCUUCU	4	0.99999999969848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN40609_c0_g1_382_TPlot.pdf
TRINITY_DN40609_c0_g1:384	si_s76	TRINITY_DN40609_c0_g1	372	393	384	-23.60	-15.40	0.652542372881356	12	5-12,389-382;14-21,379-372	1-4,393-390[UP5];13-13,381-380[AILt]	((((((((..((((((((....&....))))))))-.))))))))	AAGAAAGGCUAAGGAAGAUAUG&AUUUUUUUUCUU-UCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN40609_c0_g1_384_TPlot.pdf
TRINITY_DN4060_c0_g1:1289	si_s712	TRINITY_DN4060_c0_g1	1278	1298	1289	-32.00	-21.10	0.659375	10	3-8,1296-1291;10-16,1289-1283	1-2,1298-1297[UP5];9-9,1290-1290[SIL];17-21,1282-1278[UP3]	.....(((((((.((((((..&..)))))).))))))).....	GGAACCUUUCCCGGUUCACAG&UAGUGAACAGGGAAAGAUAUU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s712_TRINITY_DN4060_c0_g1_1289_TPlot.pdf
TRINITY_DN4060_c0_g1:1940	si_a332	TRINITY_DN4060_c0_g1	1926	1951	1940	-30.60	-19.90	0.650326797385621	13	1-9,1951-1943;10-12,1940-1938;13-21,1934-1926	x-x,1942-1941[BULt];x-x,1937-1935[BULt]	(((((((((...(((..(((((((((&)))))))))--)))---)))))))))	UUUCGGGACUUAGAGUCGGAUAGAAA&UUUUUAUUC--CUU---GUCCCGAAA	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN4060_c0_g1_1940_TPlot.pdf
TRINITY_DN4060_c0_g1:3059	si_s353	TRINITY_DN4060_c0_g1	3048	3068	3059	-26.90	-18.10	0.672862453531599	5.5	1-11,3068-3058;13-19,3056-3050	12-12,3057-3057[SIL];20-21,3049-3048[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UGUUAAUCUCUUUCUUUGUCU&AGAUAAAGAAAUAGAUUGAAC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN4060_c0_g1_3059_TPlot.pdf
TRINITY_DN4060_c0_g2:1314	si_a452	TRINITY_DN4060_c0_g2	1303	1326	1314	-23.00	-15.50	0.673913043478261	12	1-4,1326-1323;5-17,1319-1307	x-x,1322-1320[BULt];18-21,1306-1303[UP3]	....(((((((((((((...((((&))))---)))))))))))))....	GCCAGUAUGGCAACAAUCAAUAUC&GAUA---AUUGUUGUUAUAUAUAA	2	0.994287804141701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN4060_c0_g2_1314_TPlot.pdf
TRINITY_DN4060_c0_g2:1315	si_a451	TRINITY_DN4060_c0_g2	1304	1327	1315	-23.60	-15.60	0.661016949152542	11.5	2-5,1326-1323;6-18,1319-1307	1-1,1327-1327[UP5];x-x,1322-1320[BULt];19-21,1306-1304[UP3]	...(((((((((((((...((((.&.))))---)))))))))))))...	CCAGUAUGGCAACAAUCAAUAUCA&AGAUA---AUUGUUGUUAUAUAUA	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN4060_c0_g2_1315_TPlot.pdf
TRINITY_DN4060_c0_g2:223	si_a456	TRINITY_DN4060_c0_g2	212	232	223	-22.80	-15.10	0.662280701754386	8.5	1-5,232-228;7-7,226-226;9-21,224-212	6-6,227-227[SIL];8-8,225-225[SIL]	(((((((((((((.(.(((((&))))).).)))))))))))))	CAUAUUAUGUGUAUUCGCGAU&AUUGUUGUUAUAUAUAAUAUG	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN4060_c0_g2_223_TPlot.pdf
TRINITY_DN4060_c0_g3:562	si_s82	TRINITY_DN4060_c0_g3	546	571	562	-28.90	-21.10	0.730103806228374	9.5	2-13,570-559;14-20,553-547	1-1,571-571[UP5];x-x,558-554[BULt];21-21,546-546[UP3]	.(((((((.....((((((((((((.&.))))))))))))-----))))))).	CAGAGGAAUCCGCGAAAGGAGAGAGU&UUUCUUUCCUUUC-----UUCUUCUU	4	0.999999999999124	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4060_c0_g3_562_TPlot.pdf
TRINITY_DN4060_c0_g3:563	si_s81	TRINITY_DN4060_c0_g3	547	572	563	-28.90	-21.10	0.730103806228374	10.5	3-14,570-559;15-21,553-547	1-2,572-571[UP5];x-x,558-554[BULt]	(((((((.....((((((((((((..&..))))))))))))-----)))))))	AGAGGAAUCCGCGAAAGGAGAGAGUG&UUUUCUUUCCUUUC-----UUCUUCU	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4060_c0_g3_563_TPlot.pdf
TRINITY_DN4060_c0_g3:564	si_s80	TRINITY_DN4060_c0_g3	548	573	564	-28.20	-19.90	0.705673758865248	12.5	4-15,570-559;16-21,553-548	1-3,573-571[UP5];x-x,558-554[BULt]	((((((.....((((((((((((...&...))))))))))))-----))))))	GAGGAAUCCGCGAAAGGAGAGAGUGA&UUUUUCUUUCCUUUC-----UUCUUC	2	0.999999999997725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4060_c0_g3_564_TPlot.pdf
TRINITY_DN4060_c0_g3:565	si_s79	TRINITY_DN4060_c0_g3	549	574	565	-26.20	-17.30	0.66030534351145	10.5	1-3,574-572;5-16,570-559;17-21,553-549	4-4,571-571[SIL];x-x,558-554[BULt]	(((((.....((((((((((((.(((&))).))))))))))))-----)))))	AGGAAUCCGCGAAAGGAGAGAGUGAA&UUUUUUCUUUCCUUUC-----UUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4060_c0_g3_565_TPlot.pdf
TRINITY_DN4060_c0_g3:567	si_s77	TRINITY_DN4060_c0_g3	556	576	567	-25.50	-17.10	0.670588235294118	11	3-5,574-572;7-18,570-559	1-2,576-575[UP5];6-6,571-571[SIL];19-21,558-556[UP3]	...((((((((((((.(((..&..))).))))))))))))...	CGCGAAAGGAGAGAGUGAACC&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4060_c0_g3_567_TPlot.pdf
TRINITY_DN4060_c0_g3:568	si_s76	TRINITY_DN4060_c0_g3	557	577	568	-23.60	-17.10	0.724576271186441	12	4-6,574-572;8-19,570-559	1-3,577-575[UP5];7-7,571-571[SIL];20-21,558-557[UP3]	..((((((((((((.(((...&...))).))))))))))))..	GCGAAAGGAGAGAGUGAACCA&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4060_c0_g3_568_TPlot.pdf
TRINITY_DN4060_c1_g1:283	si_s71	TRINITY_DN4060_c1_g1	271	292	283	-25.70	-17.80	0.692607003891051	8	1-4,292-289;7-16,286-277;17-21,275-271	5-6,288-287[SIL];x-x,276-276[BULt]	(((((.((((((((((..((((&))))..))))))))))-)))))	GGGAGAAGAAGAAGAAAUGAAG&CUUCUAUUUUUUUUCU-UUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4060_c1_g1_283_TPlot.pdf
TRINITY_DN4060_c1_g1:284	si_s85	TRINITY_DN4060_c1_g1	273	293	284	-33.80	-23.20	0.686390532544379	5	1-5,293-289;7-19,287-275	6-6,288-288[SIL];20-21,274-273[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	GAGAAGAAGAAGAAAUGAAGG&CUUUCCUUUCUUCUUCUUCGC	4	0.99999999998891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4060_c1_g1_284_TPlot.pdf
TRINITY_DN40614_c0_g1:428	si_a327	TRINITY_DN40614_c0_g1	417	438	428	-28.40	-19.70	0.693661971830986	9.5	2-7,437-432;10-17,428-421;19-21,419-417	1-1,438-438[UP5];8-9,431-429[AILt];18-18,420-420[SIL]	(((.((((((((...((((((.&.))))))-..)))))))).)))	GGAGGAGGAGUAUUUAAAAUCU&UGAUUUU-UUUAUUCCUUGUCC	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN40614_c0_g1_428_TPlot.pdf
TRINITY_DN4061_c0_g1:1698	si_a80	TRINITY_DN4061_c0_g1	1687	1707	1698	-22.10	-14.40	0.65158371040724	7	1-14,1707-1694	15-21,1693-1687[UP3]	.......((((((((((((((&)))))))))))))).......	AAAGCAAAAUAAUGAAAAACA&UGUUUUUCAUUAUUAAGAAAA	2	0.99996777440934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN4061_c0_g1_1698_TPlot.pdf
TRINITY_DN4061_c0_g1:1700	si_a78	TRINITY_DN4061_c0_g1	1689	1709	1700	-22.30	-15.30	0.68609865470852	6	2-16,1708-1694	1-1,1709-1709[UP5];17-21,1693-1689[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGCAAAAUAAUGAAAAACAAA&AUUGUUUUUCAUUAUUAAGAA	3	0.999990257383135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN4061_c0_g1_1700_TPlot.pdf
TRINITY_DN4061_c0_g1:1704	si_a74	TRINITY_DN4061_c0_g1	1693	1716	1704	-22.20	-15.32	0.69009009009009	11	1-3,1716-1714;6-20,1708-1694	4-5,1713-1709[AILt];21-21,1693-1693[UP3]	.(((((((((((((((.....(((&)))---..))))))))))))))).	AAAUAAUGAAAAACAAAACAGUGA&UCA---AAUUGUUUUUCAUUAUUA	4	0.99999750563007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4061_c0_g1_1704_TPlot.pdf
TRINITY_DN4061_c0_g1:732	si_a70	TRINITY_DN4061_c0_g1	720	741	732	-23.90	-16.30	0.682008368200837	6.5	1-8,741-734;11-13,731-729;14-21,727-720	9-10,733-732[SIL];x-x,728-728[BULt]	((((((((.(((..((((((((&))))))))..)))-))))))))	AGUGAGAAGGCAUAUUGAAAGA&UCUUUCAAAUUGU-UUUUCAUU	4	0.999999984772108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4061_c0_g1_732_TPlot.pdf
TRINITY_DN4061_c0_g1:733	si_a69	TRINITY_DN4061_c0_g1	721	742	733	-24.00	-15.70	0.654166666666667	7.5	2-9,741-734;12-14,731-729;15-21,727-721	1-1,742-742[UP5];10-11,733-732[SIL];x-x,728-728[BULt]	(((((((.(((..((((((((.&.))))))))..)))-)))))))	GUGAGAAGGCAUAUUGAAAGAU&UUCUUUCAAAUUGU-UUUUCAU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN4061_c0_g1_733_TPlot.pdf
TRINITY_DN4062_c0_g1:642	si_a411	TRINITY_DN4062_c0_g1	631	651	642	-17.90	-11.90	0.664804469273743	7	2-8,650-644;10-19,642-633	1-1,651-651[UP5];9-9,643-643[SIL];20-21,632-631[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	GAUUGUUUGGAUCUAAACAAU&UUUGUUUAUAUUUAAAUAAAU	4	0.99999999969848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4062_c0_g1_642_TPlot.pdf
TRINITY_DN4062_c0_g1:643	si_a410	TRINITY_DN4062_c0_g1	632	652	643	-17.80	-11.90	0.668539325842697	7.5	3-9,650-644;11-20,642-633	1-2,652-651[UP5];10-10,643-643[SIL];21-21,632-632[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	AUUGUUUGGAUCUAAACAAUG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4062_c0_g1_643_TPlot.pdf
TRINITY_DN4065_c0_g1:3130	si_a139	TRINITY_DN4065_c0_g1	3119	3140	3130	-25.90	-17.00	0.656370656370656	10.5	1-2,3140-3139;3-18,3137-3122	x-x,3138-3138[BULt];19-21,3121-3119[UP3]	...((((((((((((((((.((&))-))))))))))))))))...	GGUCGACAAUGGUUGGUUGUCU&AG-UAAUUAAUCGUUGUUGUUU	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN4065_c0_g1_3130_TPlot.pdf
TRINITY_DN4065_c0_g1:3136	si_a133	TRINITY_DN4065_c0_g1	3125	3146	3136	-28.10	-22.00	0.782918149466192	7.5	2-8,3145-3139;9-21,3137-3125	1-1,3146-3146[UP5];x-x,3138-3138[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	CAAUGGUUGGUUGUCUGUUGCC&AGCAAUAG-UAAUUAAUCGUUG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a133_TRINITY_DN4065_c0_g1_3136_TPlot.pdf
TRINITY_DN4065_c0_g1:384	si_a194	TRINITY_DN4065_c0_g1	372	393	384	-29.40	-20.70	0.704081632653061	8	1-11,393-383;12-15,381-378	x-x,382-382[BULt];16-21,377-372[UP3]	......((((.(((((((((((&)))))))))))-))))......	UAUGAAUAGUAGAACAGGGAAA&UUUCCCUGUUC-ACUAAUAAAU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN4065_c0_g1_384_TPlot.pdf
TRINITY_DN4065_c0_g1:385	si_a193	TRINITY_DN4065_c0_g1	373	394	385	-30.90	-20.80	0.673139158576052	8	2-12,393-383;13-16,381-378	1-1,394-394[UP5];x-x,382-382[BULt];17-21,377-373[UP3]	.....((((.(((((((((((.&.)))))))))))-)))).....	AUGAAUAGUAGAACAGGGAAAC&CUUUCCCUGUUC-ACUAAUAAA	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN4065_c0_g1_385_TPlot.pdf
TRINITY_DN4065_c0_g1:3876	si_a351	TRINITY_DN4065_c0_g1	3865	3885	3876	-20.50	-13.60	0.663414634146341	9.5	4-18,3882-3868	1-3,3885-3883[UP5];19-21,3867-3865[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAAAAUGGAGUUAAUAAAU&AAAUAUUAAUUCUAUUUUGAU	3	0.999998927568074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN4065_c0_g1_3876_TPlot.pdf
TRINITY_DN4065_c0_g1:390	si_a188	TRINITY_DN4065_c0_g1	378	402	390	-32.00	-22.50	0.703125	10	3-8,400-395;9-17,391-383;18-21,381-378	1-2,402-401[UP5];x-x,394-392[BULt];x-x,382-382[BULt]	((((.(((((((((...((((((..&..))))))---)))))))))-))))	UAGUAGAACAGGGAAACAAGAUAAC&AAUAUCUU---UCCCUGUUC-ACUA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN4065_c0_g1_390_TPlot.pdf
TRINITY_DN4065_c0_g1:391	si_a187	TRINITY_DN4065_c0_g1	379	403	391	-32.00	-21.10	0.659375	12	4-9,400-395;10-18,391-383;19-21,381-379	1-3,403-401[UP5];x-x,394-392[BULt];x-x,382-382[BULt]	(((.(((((((((...((((((...&...))))))---)))))))))-)))	AGUAGAACAGGGAAACAAGAUAACG&UAAUAUCUU---UCCCUGUUC-ACU	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN4065_c0_g1_391_TPlot.pdf
TRINITY_DN4065_c0_g1:420	si_a784	TRINITY_DN4065_c0_g1	409	433	420	-24.70	-16.60	0.672064777327935	12.5	2-7,432-427;8-19,422-411	1-1,433-433[UP5];x-x,426-423[BULt];20-21,410-409[UP3]	..((((((((((((....((((((.&.))))))----))))))))))))..	GUGAUAGGGAAAUAUGGUGAAGAGG&ACUCUUC----UAUUUUUCUAUUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4065_c0_g1_420_TPlot.pdf
TRINITY_DN4065_c0_g1:421	si_a783	TRINITY_DN4065_c0_g1	410	434	421	-24.70	-16.60	0.672064777327935	13.5	3-8,432-427;9-20,422-411	1-2,434-433[UP5];x-x,426-423[BULt];21-21,410-410[UP3]	.((((((((((((....((((((..&..))))))----)))))))))))).	UGAUAGGGAAAUAUGGUGAAGAGGU&AACUCUUC----UAUUUUUCUAUUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4065_c0_g1_421_TPlot.pdf
TRINITY_DN4065_c0_g1:472	si_a408	TRINITY_DN4065_c0_g1	461	481	472	-20.10	-13.30	0.661691542288557	10	1-13,481-469	14-21,468-461[UP3]	........(((((((((((((&)))))))))))))........	UAAACCUCUGUAAGCAAAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999999858	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4065_c0_g1_472_TPlot.pdf
TRINITY_DN4065_c0_g1:473	si_a407	TRINITY_DN4065_c0_g1	462	482	473	-19.80	-14.20	0.717171717171717	8.5	1-14,482-469	15-21,468-462[UP3]	.......((((((((((((((&)))))))))))))).......	AAACCUCUGUAAGCAAAACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.99986516281768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4065_c0_g1_473_TPlot.pdf
TRINITY_DN4065_c0_g1:474	si_a406	TRINITY_DN4065_c0_g1	463	483	474	-19.80	-14.20	0.717171717171717	8.5	2-15,482-469	1-1,483-483[UP5];16-21,468-463[UP3]	......((((((((((((((.&.))))))))))))))......	AACCUCUGUAAGCAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	4	0.999999989712558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4065_c0_g1_474_TPlot.pdf
TRINITY_DN4065_c0_g1:475	si_a405	TRINITY_DN4065_c0_g1	464	484	475	-19.80	-14.20	0.717171717171717	9.5	3-16,482-469	1-2,484-483[UP5];17-21,468-464[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACCUCUGUAAGCAAAACAAAU&AAUUGUUUUGUUUAUAUUUAA	3	0.999999998384887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4065_c0_g1_475_TPlot.pdf
TRINITY_DN4065_c0_g1:4995	si_a462	TRINITY_DN4065_c0_g1	4984	5004	4995	-21.20	-15.10	0.712264150943396	7.5	1-9,5004-4996;12-16,4993-4989;18-21,4987-4984	10-11,4995-4994[SIL];17-17,4988-4988[SIL]	((((.(((((..(((((((((&)))))))))..))))).))))	UGAUGACAUAGAGUAUAUGAC&GUUAUAUAUAAUAUGUAAUUA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN4065_c0_g1_4995_TPlot.pdf
TRINITY_DN4065_c0_g1:4996	si_a484	TRINITY_DN4065_c0_g1	4985	5005	4996	-27.30	-18.68	0.684249084249084	8	1-9,5005-4997;13-21,4993-4985	10-12,4996-4994[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	GAUGACAUAGAGUAUAUGACA&UGUUAUAUAGAAUAUGUCGUU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN4065_c0_g1_4996_TPlot.pdf
TRINITY_DN4065_c0_g1:4997	si_a460	TRINITY_DN4065_c0_g1	4986	5006	4997	-21.60	-15.00	0.694444444444444	9	2-11,5005-4996;14-18,4993-4989	1-1,5006-5006[UP5];12-13,4995-4994[SIL];19-21,4988-4986[UP3]	...(((((..((((((((((.&.))))))))))..)))))...	AUGACAUAGAGUAUAUGACAC&UUGUUAUAUAUAAUAUGUAAU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN4065_c0_g1_4997_TPlot.pdf
TRINITY_DN4065_c0_g1:5203	si_s72	TRINITY_DN4065_c0_g1	5192	5216	5203	-24.10	-15.84	0.657261410788382	17.5	1-9,5216-5208;13-21,5200-5192	10-12,5207-5201[AILt]	(((((((((.......(((((((((&)))))))))----...)))))))))	GAGGAAAGAUGUAUCCAAGGUAGGA&UUCUAUUUU----UUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4065_c0_g1_5203_TPlot.pdf
TRINITY_DN4066_c0_g1:539	si_s315	TRINITY_DN4066_c0_g1	528	549	539	-31.60	-21.60	0.683544303797468	9	2-7,548-543;8-18,541-531	1-1,549-549[UP5];x-x,542-542[BULt];19-21,530-528[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	AAAUGACAGGGAGGAACAGAGC&AUUCUGU-CCUUCUUGUUACAA	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN4066_c0_g1_539_TPlot.pdf
TRINITY_DN4066_c0_g1:540	si_s314	TRINITY_DN4066_c0_g1	529	550	540	-31.50	-21.60	0.685714285714286	10	3-8,548-543;9-19,541-531	1-2,550-549[UP5];x-x,542-542[BULt];20-21,530-529[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	AAUGACAGGGAGGAACAGAGCA&AAUUCUGU-CCUUCUUGUUACA	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN4066_c0_g1_540_TPlot.pdf
TRINITY_DN4066_c0_g1:544	si_s311	TRINITY_DN4066_c0_g1	532	553	544	-30.60	-20.50	0.669934640522876	13.5	6-11,548-543;12-21,541-532	1-5,553-549[UP5];x-x,542-542[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GACAGGGAGGAACAGAGCAAUA&GAAAAUUCUGU-CCUUCUUGUU	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN4066_c0_g1_544_TPlot.pdf
TRINITY_DN40671_c0_g1:145	si_a410	TRINITY_DN40671_c0_g1	134	154	145	-17.80	-16.50	0.926966292134831	4.5	1-18,154-137	19-21,136-134[UP3]	...((((((((((((((((((&))))))))))))))))))...	GUGAUUUGAAUGUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN40671_c0_g1_145_TPlot.pdf
TRINITY_DN406_c0_g2:1125	si_s24	TRINITY_DN406_c0_g2	1113	1134	1125	-27.30	-18.90	0.692307692307692	7	1-7,1134-1128;10-16,1125-1119;18-21,1116-1113	8-9,1127-1126[SIL];17-17,1118-1117[AILt]	((((..(((((((..(((((((&)))))))..)))))))-.))))	AGAUAGUAGUUGCUUUCAAUGU&AUAUUGAUUGCAACUA-AAUCU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN406_c0_g2_1125_TPlot.pdf
TRINITY_DN406_c0_g2:1127	si_s22	TRINITY_DN406_c0_g2	1116	1136	1127	-26.70	-18.80	0.704119850187266	9	2-9,1135-1128;12-18,1125-1119	1-1,1136-1136[UP5];10-11,1127-1126[SIL];19-21,1118-1116[UP3]	...(((((((..((((((((.&.))))))))..)))))))...	UAGUAGUUGCUUUCAAUGUAA&CUAUAUUGAUUGCAACUAAAU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN406_c0_g2_1127_TPlot.pdf
TRINITY_DN406_c0_g2:1128	si_s21	TRINITY_DN406_c0_g2	1117	1138	1128	-27.40	-19.10	0.697080291970803	9	1-3,1138-1136;4-10,1134-1128;13-19,1125-1119	x-x,1135-1135[BULt];11-12,1127-1126[SIL];20-21,1118-1117[UP3]	..(((((((..(((((((.(((&)))-)))))))..)))))))..	AGUAGUUGCUUUCAAUGUAAGU&ACU-AUAUUGAUUGCAACUAAA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN406_c0_g2_1128_TPlot.pdf
TRINITY_DN406_c0_g2:1129	si_s20	TRINITY_DN406_c0_g2	1118	1139	1129	-27.80	-20.20	0.726618705035971	7	1-4,1139-1136;5-11,1134-1128;14-20,1125-1119	x-x,1135-1135[BULt];12-13,1127-1126[SIL];21-21,1118-1118[UP3]	.(((((((..(((((((.((((&))))-)))))))..))))))).	GUAGUUGCUUUCAAUGUAAGUA&UACU-AUAUUGAUUGCAACUAA	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN406_c0_g2_1129_TPlot.pdf
TRINITY_DN406_c0_g2:1130	si_s19	TRINITY_DN406_c0_g2	1119	1140	1130	-27.80	-20.20	0.726618705035971	6	2-5,1139-1136;6-12,1134-1128;15-21,1125-1119	1-1,1140-1140[UP5];x-x,1135-1135[BULt];13-14,1127-1126[SIL]	(((((((..(((((((.((((.&.))))-)))))))..)))))))	UAGUUGCUUUCAAUGUAAGUAU&UUACU-AUAUUGAUUGCAACUA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN406_c0_g2_1130_TPlot.pdf
TRINITY_DN406_c0_g2:1131	si_s18	TRINITY_DN406_c0_g2	1120	1141	1131	-27.50	-18.80	0.683636363636364	8	3-6,1139-1136;7-13,1134-1128;16-21,1125-1120	1-2,1141-1140[UP5];x-x,1135-1135[BULt];14-15,1127-1126[SIL]	((((((..(((((((.((((..&..))))-)))))))..))))))	AGUUGCUUUCAAUGUAAGUAUG&AUUACU-AUAUUGAUUGCAACU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN406_c0_g2_1131_TPlot.pdf
TRINITY_DN40714_c0_g1:299	si_a79	TRINITY_DN40714_c0_g1	288	308	299	-22.20	-15.70	0.707207207207207	6.5	1-15,308-294	16-21,293-288[UP3]	......(((((((((((((((&)))))))))))))))......	GGAAAAGAUAAUGAAAAACAA&UUGUUUUUCAUUAUUAAGAAA	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN40714_c0_g1_299_TPlot.pdf
TRINITY_DN40716_c0_g1:213	si_s897	TRINITY_DN40716_c0_g1	202	221	213	-31.30	-20.60	0.65814696485623	10	2-8,220-214;10-20,213-203	1-1,221-221[UP5];9-9,x-x[BULq];21-21,202-202[UP3]	.(((((((((((-(((((((.&.))))))).))))))))))).	AUGGGAUUGGGG-GAGGGCUC&AGGCUUUCUCUUCAAUUUCAA	4	0.999999811047329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN40716_c0_g1_213_TPlot.pdf
TRINITY_DN40716_c0_g1:410	si_a22	TRINITY_DN40716_c0_g1	399	419	410	-23.50	-15.30	0.651063829787234	12	4-18,416-402	1-3,419-417[UP5];19-21,401-399[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAAGGGACUGAAGAUGAAGAU&CUAUUUAUUUUUAGUUCUAAG	2	0.999902439946276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN40716_c0_g1_410_TPlot.pdf
TRINITY_DN4071_c0_g1:2348	si_s485	TRINITY_DN4071_c0_g1	2337	2357	2348	-18.10	-12.20	0.674033149171271	4.5	1-5,2357-2353;7-13,2351-2345;15-21,2343-2337	6-6,2352-2352[SIL];14-14,2344-2344[SIL]	(((((((.(((((((.(((((&))))).))))))).)))))))	UUUGUAUAUAAAUAAUUAUGG&CUAUAUUUAUUUAAAUAUAAA	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN4071_c0_g1_2348_TPlot.pdf
TRINITY_DN40720_c0_g1:156	si_s380	TRINITY_DN40720_c0_g1	146	166	156	-40.00	-27.20	0.68	9.5	1-5,166-162;6-7,160-159;9-15,157-151;17-19,150-148	x-x,161-161[BULt];8-8,158-158[SIL];16-16,x-x[BULq];20-21,147-146[UP3]	..(((-(((((((.((.(((((&)))))-)).))))))).)))..	CUUGU-GGGCGGAGGCGGCGGG&CUCGC-GUGUCCGCCUUACAUU	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN40720_c0_g1_156_TPlot.pdf
TRINITY_DN40720_c0_g1:162	si_s632	TRINITY_DN40720_c0_g1	151	170	162	-38.20	-25.30	0.662303664921466	11	1-9,170-162;12-13,160-159;15-21,157-151	10-11,161-161[AILq];14-14,158-158[SIL]	(((((((.((.-(((((((((&)))))))))..)).)))))))	GGGCGGAGGCG-GCGGGGGGA&UCUUUUCGUAGGCGUUUGCCC	2	0.986177743532797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN40720_c0_g1_162_TPlot.pdf
TRINITY_DN4072_c0_g1:3129	si_a784	TRINITY_DN4072_c0_g1	3118	3138	3129	-24.70	-17.00	0.688259109311741	8.5	3-16,3136-3123;18-21,3121-3118	1-2,3138-3137[UP5];17-17,3122-3122[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AGAAAGGAGGAGUAGAGGACU&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999996771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4072_c0_g1_3129_TPlot.pdf
TRINITY_DN4072_c0_g1:3130	si_a783	TRINITY_DN4072_c0_g1	3119	3139	3130	-24.70	-16.40	0.663967611336032	12.5	4-17,3136-3123	1-3,3139-3137[UP5];18-21,3122-3119[UP3]	....((((((((((((((...&...))))))))))))))....	GAAAGGAGGAGUAGAGGACUA&AACUCUUCUAUUUUUCUAUUU	2	0.999999999969331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4072_c0_g1_3130_TPlot.pdf
TRINITY_DN4072_c0_g3:215	si_a448	TRINITY_DN4072_c0_g3	204	224	215	-25.50	-17.90	0.701960784313725	6.5	2-6,223-219;8-20,217-205	1-1,224-224[UP5];7-7,218-218[SIL];21-21,204-204[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	CUAUGGCGACAAUUUUCUUAC&AUGAGAUAAUUGUUGUUAUAU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN4072_c0_g3_215_TPlot.pdf
TRINITY_DN4072_c5_g1:385	si_a448	TRINITY_DN4072_c5_g1	374	394	385	-25.50	-17.90	0.701960784313725	9.5	3-6,392-389;9-21,386-374	1-2,394-393[UP5];7-8,388-387[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	AUAUAACGACGAUGUUCUUCA&AUGAGAUAAUUGUUGUUAUAU	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN4072_c5_g1_385_TPlot.pdf
TRINITY_DN4075_c0_g1:583	si_a125	TRINITY_DN4075_c0_g1	572	592	583	-25.00	-17.00	0.68	9	2-16,591-577	1-1,592-592[UP5];17-21,576-572[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGGUCCUAUUGUUGUAGAACC&UGUUUUAUAGCAAUAGUAAUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN4075_c0_g1_583_TPlot.pdf
TRINITY_DN40766_c0_g1:254	si_a379	TRINITY_DN40766_c0_g1	243	263	254	-23.90	-16.80	0.702928870292887	6.5	2-20,262-244	1-1,263-263[UP5];21-21,243-243[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CUUUUGGUUUGAAGUUAUUUG&AAAAUGAUUUCGAAUUAAGAA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a379_TRINITY_DN40766_c0_g1_254_TPlot.pdf
TRINITY_DN40766_c0_g1:255	si_a378	TRINITY_DN40766_c0_g1	244	264	255	-23.80	-16.50	0.69327731092437	7	3-21,262-244	1-2,264-263[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUUUGGUUUGAAGUUAUUUGU&AAAAAUGAUUUCGAAUUAAGA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a378_TRINITY_DN40766_c0_g1_255_TPlot.pdf
TRINITY_DN4078_c0_g1:3039	si_s83	TRINITY_DN4078_c0_g1	3028	3048	3039	-30.90	-21.00	0.679611650485437	7.5	2-5,3047-3044;8-20,3041-3029	1-1,3048-3048[UP5];6-7,3043-3042[SIL];21-21,3028-3028[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AGAGAAGAAGAAGGAUAAGAU&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4078_c0_g1_3039_TPlot.pdf
TRINITY_DN4078_c0_g1:4638	si_s16	TRINITY_DN4078_c0_g1	4627	4649	4638	-25.60	-17.00	0.6640625	7	1-6,4649-4644;7-21,4641-4627	x-x,4643-4642[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	UUGUAAUUAAUAUAGGAUAGUGA&UUAUUA--CUAUAUUGAUUGCAA	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN4078_c0_g1_4638_TPlot.pdf
TRINITY_DN40794_c0_g1:94	si_a116	TRINITY_DN40794_c0_g1	81	103	94	-31.10	-21.40	0.688102893890675	8	4-14,100-90;15-21,87-81	1-3,103-101[UP5];x-x,89-88[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	UGUUAUGUUAAACAAGCUCGCAG&AUACGAGCUUGUUU--UAUAGCA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN40794_c0_g1_94_TPlot.pdf
TRINITY_DN40794_c0_g1:97	si_a113	TRINITY_DN40794_c0_g1	86	106	97	-26.20	-17.20	0.656488549618321	12.5	7-17,100-90;19-21,88-86	1-6,106-101[UP5];18-18,89-89[SIL]	(((.(((((((((((......&......))))))))))).)))	UGUUAAACAAGCUCGCAGACA&AAAAUACGAGCUUGUUUUAUA	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN40794_c0_g1_97_TPlot.pdf
TRINITY_DN4079_c0_g1:3599	si_a899	TRINITY_DN4079_c0_g1	3588	3608	3599	-18.70	-12.40	0.663101604278075	10	6-21,3603-3588	1-5,3608-3604[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUUUAUAUUAUUUAUAUAAU&UAAUAAUAAGUAAUAUAAAAA	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN4079_c0_g1_3599_TPlot.pdf
TRINITY_DN4079_c0_g1:479	si_a318	TRINITY_DN4079_c0_g1	468	487	479	-22.50	-14.70	0.653333333333333	8.5	3-9,485-479;11-19,478-470	1-2,487-486[UP5];10-10,x-x[BULq];20-21,469-468[UP3]	..(((((((((-(((((((..&..))))))).)))))))))..	ACGGAAAAGUC-UGGAUAACG&AUUUAUCCAUGAUUUUUUUAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4079_c0_g1_479_TPlot.pdf
TRINITY_DN4079_c0_g1:612	si_s53	TRINITY_DN4079_c0_g1	600	621	612	-31.20	-20.50	0.657051282051282	7.5	1-4,621-618;6-10,616-612;11-18,610-603	5-5,617-617[SIL];x-x,611-611[BULt];19-21,602-600[UP3]	...((((((((.(((((.((((&)))).)))))-))))))))...	AUAUUGCUGACAUUGAAUUCCA&UGGAUUUCAA-GUUAGCAACUU	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN4079_c0_g1_612_TPlot.pdf
TRINITY_DN4079_c0_g1:614	si_s51	TRINITY_DN4079_c0_g1	602	623	614	-30.70	-21.40	0.697068403908795	6.5	2-6,622-618;8-12,616-612;13-20,610-603	1-1,623-623[UP5];7-7,617-617[SIL];x-x,611-611[BULt];21-21,602-602[UP3]	.((((((((.(((((.(((((.&.))))).)))))-)))))))).	AUUGCUGACAUUGAAUUCCAAA&AUUGGAUUUCAA-GUUAGCAAC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN4079_c0_g1_614_TPlot.pdf
TRINITY_DN4079_c0_g1:617	si_s48	TRINITY_DN4079_c0_g1	605	626	617	-28.80	-19.10	0.663194444444445	10.5	5-9,622-618;11-15,616-612;16-21,610-605	1-4,626-623[UP5];10-10,617-617[SIL];x-x,611-611[BULt]	((((((.(((((.(((((....&....))))).)))))-))))))	GCUGACAUUGAAUUCCAAAAGG&AUAAUUGGAUUUCAA-GUUAGC	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN4079_c0_g1_617_TPlot.pdf
TRINITY_DN4079_c0_g1:775	si_s68	TRINITY_DN4079_c0_g1	764	784	775	-23.10	-15.10	0.653679653679654	11	4-4,781-781;7-21,778-764	1-3,784-782[UP5];5-6,780-779[SIL]	(((((((((((((((..(...&...)..)))))))))))))))	AGAGAAAAGAAAUGGUUGGGU&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4079_c0_g1_775_TPlot.pdf
TRINITY_DN407_c0_g1:1265	si_a637	TRINITY_DN407_c0_g1	1254	1279	1265	-25.80	-17.40	0.674418604651163	13.5	1-9,1279-1271;10-20,1265-1255	x-x,1270-1266[BULt];21-21,1254-1254[UP3]	.(((((((((((.....(((((((((&)))))))))-----))))))))))).	UUAUUACUCAAAUAUCAGAAAUUGAU&GUCGAUUUU-----UUUGAGUAAUAU	2	0.999955461198746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN407_c0_g1_1265_TPlot.pdf
TRINITY_DN40805_c0_g1:732	si_s77	TRINITY_DN40805_c0_g1	721	741	732	-25.50	-18.10	0.709803921568627	13.5	7-20,735-722	1-6,741-736[UP5];21-21,721-721[UP3]	.((((((((((((((......&......)))))))))))))).	CAAGAGAGGGAAGAAUUAUUA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN40805_c0_g1_732_TPlot.pdf
TRINITY_DN4083_c0_g1:315	si_a635	TRINITY_DN4083_c0_g1	304	323	315	-26.10	-17.20	0.659003831417624	8	1-5,323-319;8-21,317-304	6-7,318-318[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	GUUAUUCAAGAAGAA-GGCAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999999999998675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4083_c0_g1_315_TPlot.pdf
TRINITY_DN40847_c0_g1:23	si_a626	TRINITY_DN40847_c0_g1	12	32	23	-30.20	-20.14	0.666887417218543	13.5	2-5,31-28;11-21,22-12	1-1,32-32[UP5];6-10,27-23[SIL]	(((((((((((.....((((.&.)))).....)))))))))))	GAGGAUCGACGGCAAUCGCCG&AGGCGUAUUAUGUCGAUUUUU	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN40847_c0_g1_23_TPlot.pdf
TRINITY_DN4085_c0_g1:1566	si_a323	TRINITY_DN4085_c0_g1	1551	1575	1566	-26.80	-17.58	0.655970149253731	8.5	2-16,1574-1560;18-21,1554-1551	1-1,1575-1575[UP5];17-17,1559-1555[AILt]	((((.....(((((((((((((((.&.)))))))))))))))----.))))	AAGGUUUUUAUGAAGGAAUCAUGGC&UCCAUGAUUUUUUUAU----UCCUU	2	0.999994564445198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN4085_c0_g1_1566_TPlot.pdf
TRINITY_DN4085_c0_g1:1747	si_a226	TRINITY_DN4085_c0_g1	1736	1757	1747	-27.60	-18.10	0.655797101449275	10	1-4,1757-1754;7-18,1750-1739	5-6,1753-1751[AILt];19-21,1738-1736[UP3]	...((((((((((((...((((&))))-..))))))))))))...	AUAGAUUAUGGAAACCAAGAGU&ACUC-AUGUUUCUAUAAUCAAU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN4085_c0_g1_1747_TPlot.pdf
TRINITY_DN4085_c0_g1:1748	si_a225	TRINITY_DN4085_c0_g1	1737	1758	1748	-27.50	-18.40	0.669090909090909	9.5	2-5,1757-1754;8-19,1750-1739	1-1,1758-1758[UP5];6-7,1753-1751[AILt];20-21,1738-1737[UP3]	..((((((((((((...((((.&.))))-..))))))))))))..	UAGAUUAUGGAAACCAAGAGUG&AACUC-AUGUUUCUAUAAUCAA	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN4085_c0_g1_1748_TPlot.pdf
TRINITY_DN4085_c0_g1:1750	si_a223	TRINITY_DN4085_c0_g1	1739	1760	1750	-27.10	-17.90	0.660516605166052	11.5	4-7,1757-1754;10-21,1750-1739	1-3,1760-1758[UP5];8-9,1753-1751[AILt]	((((((((((((...((((...&...))))-..))))))))))))	GAUUAUGGAAACCAAGAGUGGA&UAAACUC-AUGUUUCUAUAAUC	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN4085_c0_g1_1750_TPlot.pdf
TRINITY_DN4085_c0_g1:2106	si_a319	TRINITY_DN4085_c0_g1	2095	2116	2106	-22.40	-15.10	0.674107142857143	8	1-8,2116-2109;10-18,2106-2098	9-9,2108-2107[AILt];19-21,2097-2095[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	CAAAAAGGAAUCUCUGGAUAAA&UUUAUCCA-UGAUUUUUUUAUU	2	0.999999889493727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4085_c0_g1_2106_TPlot.pdf
TRINITY_DN4085_c0_g1:2107	si_a318	TRINITY_DN4085_c0_g1	2096	2117	2107	-22.50	-15.10	0.671111111111111	8	2-9,2116-2109;11-19,2106-2098	1-1,2117-2117[UP5];10-10,2108-2107[AILt];20-21,2097-2096[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	AAAAAGGAAUCUCUGGAUAAAA&AUUUAUCCA-UGAUUUUUUUAU	3	0.999999999995256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4085_c0_g1_2107_TPlot.pdf
TRINITY_DN4085_c0_g1:3250	si_s898	TRINITY_DN4085_c0_g1	3239	3259	3250	-30.70	-20.30	0.661237785016287	9	1-4,3259-3256;6-15,3254-3245;17-18,3243-3242	5-5,3255-3255[SIL];16-16,3244-3244[SIL];19-21,3241-3239[UP3]	...((.((((((((((.((((&)))).)))))))))).))...	CUAGAUGUUGAAGAGGUGGCU&GGCUUUCUCUUCAAUUUCAAU	4	0.999999988594043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4085_c0_g1_3250_TPlot.pdf
TRINITY_DN4085_c0_g1:3517	si_s874	TRINITY_DN4085_c0_g1	3506	3526	3517	-28.00	-18.30	0.653571428571429	11	2-13,3525-3514	1-1,3526-3526[UP5];14-21,3513-3506[UP3]	........((((((((((((.&.))))))))))))........	GAAGAUCCAGUUCUAGGGCCC&CGGUCUUAGAACUAAAAAUAA	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN4085_c0_g1_3517_TPlot.pdf
TRINITY_DN40864_c0_g1:13	si_s552	TRINITY_DN40864_c0_g1	2	21	13	-21.10	-14.00	0.663507109004739	8	2-9,20-13;12-20,11-3	1-1,21-21[UP5];10-11,12-12[AILq];21-21,2-2[UP3]	.(((((((((.-((((((((.&.))))))))..))))))))).	UGAAAGUGUUU-UUCUGUUUA&AAAAUAGAAUUAAUAUUUUCG	2	0.991386537167641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN40864_c0_g1_13_TPlot.pdf
TRINITY_DN4086_c0_g1:4739	si_a771	TRINITY_DN4086_c0_g1	4726	4748	4739	-29.40	-19.30	0.656462585034014	8	1-10,4748-4739;12-16,4736-4732;17-21,4730-4726	11-11,4738-4737[AILt];x-x,4731-4731[BULt]	(((((.(((((..((((((((((&))))))))))-.)))))-)))))	GGAAGUGGUUGCCAUCAGUCGAA&UUUGAUUGAU-UCAACU-CUUCU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN4086_c0_g1_4739_TPlot.pdf
TRINITY_DN4086_c0_g1:4740	si_a770	TRINITY_DN4086_c0_g1	4727	4749	4740	-28.70	-19.10	0.665505226480836	7.5	1-11,4749-4739;13-17,4736-4732;18-21,4730-4727	12-12,4738-4737[AILt];x-x,4731-4731[BULt]	((((.(((((..(((((((((((&)))))))))))-.)))))-))))	GAAGUGGUUGCCAUCAGUCGAAA&UUUUGAUUGAU-UCAACU-CUUC	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN4086_c0_g1_4740_TPlot.pdf
TRINITY_DN4086_c0_g1:4823	si_s93	TRINITY_DN4086_c0_g1	4811	4832	4823	-34.80	-24.20	0.695402298850575	8	3-16,4830-4817;17-18,4815-4814	1-2,4832-4831[UP5];x-x,4816-4816[BULt];19-21,4813-4811[UP3]	...((.((((((((((((((..&..))))))))))))))-))...	GUGCCGGAAGCGAAGAAGGAUG&UCUUCUUCUUCGCUUC-GGAUU	3	0.999994692112501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4086_c0_g1_4823_TPlot.pdf
TRINITY_DN4086_c0_g1:4827	si_s799	TRINITY_DN4086_c0_g1	4816	4835	4827	-30.00	-21.40	0.713333333333333	6.5	1-9,4835-4827;11-18,4826-4819;20-21,4817-4816	10-10,x-x[BULq];19-19,4818-4818[SIL]	((.((((((((-(((((((((&))))))))).)))))))).))	GGAAGCGAAGA-AGGAUGCGA&UCGUAUUUUAUCUUCGUUACC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN4086_c0_g1_4827_TPlot.pdf
TRINITY_DN4087_c0_g1:1391	si_a817	TRINITY_DN4087_c0_g1	1380	1400	1391	-30.90	-20.68	0.669255663430421	10	4-10,1397-1391;14-21,1387-1380	1-3,1400-1398[UP5];11-13,1390-1388[SIL]	((((((((...(((((((...&...)))))))...))))))))	UUCUUUCCGGGCUUCUUCACC&GAAGAAGAAGAAAGGAAAGAA	4	0.998899486598918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN4087_c0_g1_1391_TPlot.pdf
TRINITY_DN4088_c0_g1:1107	si_s312	TRINITY_DN4088_c0_g1	1096	1116	1107	-29.00	-20.30	0.7	11	4-9,1113-1108;11-20,1106-1097	1-3,1116-1114[UP5];10-10,1107-1107[SIL];21-21,1096-1096[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	AGACGAGAAGGCUAGAGUGGG&AAAAUUCUGUCCUUCUUGUUA	2	0.997119207794828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4088_c0_g1_1107_TPlot.pdf
TRINITY_DN4091_c0_g1:2330	si_a70	TRINITY_DN4091_c0_g1	2317	2339	2330	-23.90	-17.20	0.719665271966527	6.5	1-8,2339-2332;10-16,2330-2324;17-21,2321-2317	9-9,2331-2331[SIL];x-x,2323-2322[BULt]	(((((..(((((((.((((((((&)))))))).)))))))--)))))	AGUGAAAGAGACAAAUUGAGAGA&UCUUUCAAAUUGUUUU--UCAUU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4091_c0_g1_2330_TPlot.pdf
TRINITY_DN4091_c0_g1:2709	si_a712	TRINITY_DN4091_c0_g1	2695	2718	2709	-28.20	-19.30	0.684397163120567	12	1-5,2718-2714;8-10,2711-2709;11-21,2705-2695	6-7,2713-2712[SIL];x-x,2708-2706[BULt]	(((((((((((...(((..(((((&)))))..)))---)))))))))))	GAGUGGCGAUUGAAAUUGAGGAGU&AUUCCAAAAU---AAUCGUUACUC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN4091_c0_g1_2709_TPlot.pdf
TRINITY_DN4091_c0_g1:3956	si_a591	TRINITY_DN4091_c0_g1	3945	3965	3956	-33.80	-22.50	0.665680473372781	8	4-14,3962-3952;16-20,3950-3946	1-3,3965-3963[UP5];15-15,3951-3951[SIL];21-21,3945-3945[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	UCGGAGCUUCUGUCCUUCGAA&CAAGAAGGACAGAAUUUUCGC	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN4091_c0_g1_3956_TPlot.pdf
TRINITY_DN4091_c0_g1:3957	si_a590	TRINITY_DN4091_c0_g1	3946	3966	3957	-32.10	-22.50	0.700934579439252	9	5-15,3962-3952;17-21,3950-3946	1-4,3966-3963[UP5];16-16,3951-3951[SIL]	(((((.(((((((((((....&....))))))))))).)))))	CGGAGCUUCUGUCCUUCGAAA&ACAAGAAGGACAGAAUUUUCG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a590_TRINITY_DN4091_c0_g1_3957_TPlot.pdf
TRINITY_DN4091_c0_g1:4006	si_a749	TRINITY_DN4091_c0_g1	3987	4015	4006	-42.10	-28.70	0.681710213776722	14	1-3,4015-4013;6-16,4010-4000;17-21,3991-3987	4-5,4012-4011[SIL];x-x,3999-3992[BULt]	(((((........(((((((((((..(((&)))..)))))))))))--------)))))	GCCCAAGCCAGAGGAGGAGGUUCGGAGCC&GGCCAUGAACCUCCUU--------UGGGU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN4091_c0_g1_4006_TPlot.pdf
TRINITY_DN4091_c0_g1:4007	si_a748	TRINITY_DN4091_c0_g1	3988	4016	4007	-42.00	-27.40	0.652380952380952	14.5	2-4,4015-4013;7-17,4010-4000;18-21,3991-3988	1-1,4016-4016[UP5];5-6,4012-4011[SIL];x-x,3999-3992[BULt]	((((........(((((((((((..(((.&.)))..)))))))))))--------))))	CCCAAGCCAGAGGAGGAGGUUCGGAGCCU&UGGCCAUGAACCUCCUU--------UGGG	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a748_TRINITY_DN4091_c0_g1_4007_TPlot.pdf
TRINITY_DN4094_c0_g1:2875	si_s544	TRINITY_DN4094_c0_g1	2864	2884	2875	-26.90	-18.60	0.691449814126394	7	3-19,2882-2866	1-2,2884-2883[UP5];20-21,2865-2864[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCGAUUUUAUUUUGAUUGGCG&AUCCGAUCAAAAUAGAAUUAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN4094_c0_g1_2875_TPlot.pdf
TRINITY_DN40951_c0_g1:517	si_s621	TRINITY_DN40951_c0_g1	506	527	517	-32.50	-21.92	0.674461538461539	10	2-5,526-523;9-21,518-506	1-1,527-527[UP5];6-8,522-519[AILt]	(((((((((((((....((((.&.))))-...)))))))))))))	UACGAAAAGGUCGAUAAGGAUC&AAUCC-AAGCGAUCUUUUCGUA	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN40951_c0_g1_517_TPlot.pdf
TRINITY_DN40951_c0_g1:566	si_a458	TRINITY_DN40951_c0_g1	555	575	566	-23.80	-15.70	0.659663865546218	7.5	1-8,575-568;11-21,565-555	9-10,567-566[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	UACAUGUUAUACUUAAUGAUA&UGUUGUUAUAUAUAAUAUGUA	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN40951_c0_g1_566_TPlot.pdf
TRINITY_DN4096_c0_g3:724	si_a547	TRINITY_DN4096_c0_g3	713	733	724	-26.90	-17.60	0.654275092936803	9.5	1-6,733-728;8-19,726-715	7-7,727-727[SIL];20-21,714-713[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AUGUGAAGGGGUAGCUUGGGC&GUUCAAUCUAUUUCUUUAUCU	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN4096_c0_g3_724_TPlot.pdf
TRINITY_DN4097_c0_g1:1875	si_s69	TRINITY_DN4097_c0_g1	1864	1884	1875	-23.40	-16.16	0.690598290598291	10	2-7,1883-1878;12-21,1873-1864	1-1,1884-1884[UP5];8-11,1877-1874[SIL]	((((((((((....((((((.&.))))))....))))))))))	GAAAGAAAAAUCUCGGAAGUA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4097_c0_g1_1875_TPlot.pdf
TRINITY_DN4097_c0_g1:2187	si_s97	TRINITY_DN4097_c0_g1	2174	2197	2187	-36.30	-23.80	0.65564738292011	6.5	1-7,2197-2191;8-12,2189-2185;14-16,2183-2181;17-21,2178-2174	x-x,2190-2190[BULt];13-13,2184-2184[SIL];x-x,2180-2179[BULt]	(((((..(((.(((((.(((((((&)))))))-))))).)))--)))))	UUCCAAAAUUGGGAGCAGAAGAAG&CUUCUUC-GCUUCGGAU--UGGAA	4	0.99998465846649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN4097_c0_g1_2187_TPlot.pdf
TRINITY_DN4097_c0_g1:2343	si_a638	TRINITY_DN4097_c0_g1	2332	2352	2343	-24.40	-16.08	0.659016393442623	9	1-3,2352-2350;7-19,2346-2334	4-6,2349-2347[SIL];20-21,2333-2332[UP3]	..(((((((((((((...(((&)))...)))))))))))))..	ACUGUUGCUCAAAAACGGCGA&UCGAUUUUUUUGAGUAAUAUA	2	0.999963046198844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN4097_c0_g1_2343_TPlot.pdf
TRINITY_DN4097_c0_g1:2346	si_a635	TRINITY_DN4097_c0_g1	2335	2355	2346	-26.10	-18.08	0.69272030651341	10	3-6,2353-2350;10-21,2346-2335	1-2,2355-2354[UP5];7-9,2349-2347[SIL]	((((((((((((...((((..&..))))...))))))))))))	GUUGCUCAAAAACGGCGACUU&AUGUCGAUUUUUUUGAGUAAU	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4097_c0_g1_2346_TPlot.pdf
TRINITY_DN4097_c0_g1:2388	si_s510	TRINITY_DN4097_c0_g1	2377	2398	2388	-24.80	-16.60	0.669354838709677	9.5	5-9,2394-2390;10-21,2388-2377	1-4,2398-2395[UP5];x-x,2389-2389[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	GAAUUGAGAAUAUUAGAAAAAA&ACAAUUCUA-UAUUCUUAAUUC	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN4097_c0_g1_2388_TPlot.pdf
TRINITY_DN4097_c0_g1:3214	si_s797	TRINITY_DN4097_c0_g1	3199	3223	3214	-30.00	-23.40	0.78	7	1-15,3223-3209;16-20,3204-3200	x-x,3208-3205[BULt];21-21,3199-3199[UP3]	.(((((....(((((((((((((((&)))))))))))))))----))))).	AAGCGAUCCAAGAUAGAAUACGAGU&GCUCGUAUUUUAUCU----UCGUUA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN4097_c0_g1_3214_TPlot.pdf
TRINITY_DN4097_c0_g1:3576	si_a25	TRINITY_DN4097_c0_g1	3565	3585	3576	-26.50	-17.50	0.660377358490566	5	1-4,3585-3582;6-16,3580-3570;19-21,3567-3565	5-5,3581-3581[SIL];17-18,3569-3568[SIL]	(((..(((((((((((.((((&)))).)))))))))))..)))	GGUAGUAGAACUAAAACUAGA&UUUAUUUUUAGUUCUAAGACC	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN4097_c0_g1_3576_TPlot.pdf
TRINITY_DN4097_c0_g1:3899	si_s90	TRINITY_DN4097_c0_g1	3887	3908	3899	-35.30	-25.10	0.711048158640227	5.5	2-14,3907-3895;15-20,3893-3888	1-1,3908-3908[UP5];x-x,3894-3894[BULt];21-21,3887-3887[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	AUGAAGCUGAAGAGGAAGAAGA&CUUUCUUCUUCUUC-GCUUCGG	4	0.999989198946718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4097_c0_g1_3899_TPlot.pdf
TRINITY_DN4099_c0_g1:1465	si_s10	TRINITY_DN4099_c0_g1	1454	1474	1465	-23.80	-15.60	0.65546218487395	5.5	2-14,1473-1461;16-20,1459-1455	1-1,1474-1474[UP5];15-15,1460-1460[SIL];21-21,1454-1454[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	AUAAUACAGUAAUAGUGAGUU&UACUUAUUAUUACUAUAUUGA	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN4099_c0_g1_1465_TPlot.pdf
TRINITY_DN409_c0_g3:1722	si_s65	TRINITY_DN409_c0_g3	1711	1732	1722	-26.00	-18.20	0.7	9	3-5,1730-1728;6-20,1726-1712	1-2,1732-1731[UP5];x-x,1727-1727[BULt];21-21,1711-1711[UP3]	.(((((((((((((((.(((..&..)))-))))))))))))))).	UGAAAGAGGUAGAGGUGUGCAU&UAGCA-ACUUCUAUUUUUUUUC	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN409_c0_g3_1722_TPlot.pdf
TRINITY_DN409_c0_g3:1723	si_s64	TRINITY_DN409_c0_g3	1712	1733	1723	-24.10	-18.20	0.755186721991701	10	4-6,1730-1728;7-21,1726-1712	1-3,1733-1731[UP5];x-x,1727-1727[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	GAAAGAGGUAGAGGUGUGCAUA&UUAGCA-ACUUCUAUUUUUUUU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN409_c0_g3_1723_TPlot.pdf
TRINITY_DN4102_c0_g1:1070	si_a443	TRINITY_DN4102_c0_g1	1061	1079	1070	-30.00	-20.10	0.67	6.5	3-12,1077-1068;15-21,1067-1061	1-2,1079-1078[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	ACAGCAA--AUCUCAUGUCAG&UGGAUAUGAGAUAAUUGUUGU	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN4102_c0_g1_1070_TPlot.pdf
TRINITY_DN4102_c0_g1:1144	si_s868	TRINITY_DN4102_c0_g1	1135	1153	1144	-35.90	-24.00	0.668523676880223	7	2-12,1152-1142;15-19,1141-1137	1-1,1153-1153[UP5];13-14,x-x[BULq];20-21,1136-1135[UP3]	..(((((--(((((((((((.&.)))))))))))..)))))..	CAAGUUC--AGAUCGGUGGGG&ACCUACCGGUCUUAGAACUAA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN4102_c0_g1_1144_TPlot.pdf
TRINITY_DN4102_c0_g1:1170	si_a322	TRINITY_DN4102_c0_g1	1158	1179	1170	-27.00	-18.50	0.685185185185185	10.5	1-8,1179-1172;10-11,1170-1169;14-21,1165-1158	9-9,1171-1171[SIL];12-13,1168-1166[AILt]	((((((((...((.((((((((&)))))))).))-..))))))))	GGGAGUGACUCGAUUCAUGGGU&AUCCAUGAUUU-UUUUAUUCCU	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN4102_c0_g1_1170_TPlot.pdf
TRINITY_DN4102_c0_g1:1229	si_a319	TRINITY_DN4102_c0_g1	1218	1239	1229	-22.40	-14.80	0.660714285714286	9	1-9,1239-1231;10-17,1229-1222	x-x,1230-1230[BULt];18-21,1221-1218[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	ACGCGAAGGGUCUAUGGAUAAG&UUUAUCCAU-GAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4102_c0_g1_1229_TPlot.pdf
TRINITY_DN4102_c0_g1:1231	si_a318	TRINITY_DN4102_c0_g1	1219	1240	1231	-22.50	-14.80	0.657777777777778	9	2-10,1239-1231;11-18,1229-1222	1-1,1240-1240[UP5];x-x,1230-1230[BULt];19-21,1221-1219[UP3]	...((((((((.(((((((((.&.)))))))))-))))))))...	CGCGAAGGGUCUAUGGAUAAGC&AUUUAUCCAU-GAUUUUUUUAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4102_c0_g1_1231_TPlot.pdf
TRINITY_DN4102_c0_g1:1341	si_s87	TRINITY_DN4102_c0_g1	1330	1355	1341	-32.90	-21.40	0.650455927051672	17	1-7,1355-1349;8-17,1343-1334;19-19,1332-1332	x-x,1348-1344[BULt];18-18,1333-1333[SIL];20-21,1331-1330[UP3]	..(.((((((((((.....(((((((&)))))))-----)))))))))).)..	ACGGGAAGAGGAGGCGACGGGAGGAA&UUCCUUU-----CUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4102_c0_g1_1341_TPlot.pdf
TRINITY_DN41049_c0_g1:412	si_a410	TRINITY_DN41049_c0_g1	400	421	412	-17.80	-12.10	0.679775280898876	6.5	1-14,421-408;16-20,405-401	15-15,407-406[AILt];21-21,400-400[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	AUUGUUAAAAGUAUAAACAGGA&UUUUGUUUAUAUUU-AAAUAAA	3	0.999999999980822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN41049_c0_g1_412_TPlot.pdf
TRINITY_DN4104_c0_g1:34	si_s82	TRINITY_DN4104_c0_g1	23	43	34	-28.90	-19.30	0.667820069204152	6	1-7,43-37;10-21,34-23	8-9,36-35[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAAGAAGAAGAAGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4104_c0_g1_34_TPlot.pdf
TRINITY_DN4105_c0_g1:117	si_a113	TRINITY_DN4105_c0_g1	106	126	117	-26.20	-18.30	0.698473282442748	16.5	8-20,119-107	1-7,126-120[UP5];21-21,106-106[UP3]	.(((((((((((((.......&.......))))))))))))).	GGUGAAGCAGGCUCUUCUGCC&AAAAUACGAGCUUGUUUUAUA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN4105_c0_g1_117_TPlot.pdf
TRINITY_DN4105_c0_g1:1351	si_s160	TRINITY_DN4105_c0_g1	1332	1360	1351	-40.60	-27.80	0.684729064039409	13.5	2-13,1359-1348;14-19,1339-1334	1-1,1360-1360[UP5];x-x,1347-1340[BULt];20-21,1333-1332[UP3]	..((((((........((((((((((((.&.))))))))))))--------))))))..	CCUAUCCCCACAAUCGUGGCCGUGGACCC&AGGUUCAUGGCCA--------GGGGUAAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN4105_c0_g1_1351_TPlot.pdf
TRINITY_DN4105_c0_g1:389	si_s731	TRINITY_DN4105_c0_g1	378	397	389	-34.30	-22.60	0.658892128279884	8.5	1-6,397-392;8-16,391-383	7-7,x-x[BULq];17-21,382-378[UP3]	.....(((((((((-((((((&)))))).))))))))).....	CGACAUCGCCCGUC-AGAUGA&UUAUCUAGACGGGUGAAUAGA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s731_TRINITY_DN4105_c0_g1_389_TPlot.pdf
TRINITY_DN4105_c0_g1:390	si_s730	TRINITY_DN4105_c0_g1	379	398	390	-33.40	-22.60	0.676646706586826	8.5	2-7,397-392;9-17,391-383	1-1,398-398[UP5];8-8,x-x[BULq];18-21,382-379[UP3]	....(((((((((-((((((.&.)))))).)))))))))....	GACAUCGCCCGUC-AGAUGAG&AUUAUCUAGACGGGUGAAUAG	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s730_TRINITY_DN4105_c0_g1_390_TPlot.pdf
TRINITY_DN4106_c0_g1:549	si_s525	TRINITY_DN4106_c0_g1	536	558	549	-24.00	-16.10	0.670833333333333	7	2-13,557-546;14-19,543-538	1-1,558-558[UP5];x-x,545-544[BULt];20-21,537-536[UP3]	..((((((..((((((((((((.&.))))))))))))--))))))..	UACAAGGACAUGAUUUCGAGUUC&UAAUUCGAAAUCA--UUUUUGAU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN4106_c0_g1_549_TPlot.pdf
TRINITY_DN41070_c0_g1:270	si_a326	TRINITY_DN41070_c0_g1	256	280	270	-26.20	-17.40	0.66412213740458	9	1-6,280-275;7-13,273-267;14-21,263-256	x-x,274-274[BULt];x-x,266-264[BULt]	((((((((...(((((((.((((((&))))))-)))))))---))))))))	GGCAAGGGGUUAUAAAGACGAUCGU&AUGAUU-UUUUUAU---UCCUUGUC	4	0.999999998846462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN41070_c0_g1_270_TPlot.pdf
TRINITY_DN41070_c0_g1:271	si_a325	TRINITY_DN41070_c0_g1	257	281	271	-25.90	-18.00	0.694980694980695	9	1-7,281-275;8-14,273-267;15-21,263-257	x-x,274-274[BULt];x-x,266-264[BULt]	(((((((...(((((((.(((((((&)))))))-)))))))---)))))))	GCAAGGGGUUAUAAAGACGAUCGUG&CAUGAUU-UUUUUAU---UCCUUGU	2	0.989488553500752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN41070_c0_g1_271_TPlot.pdf
TRINITY_DN4107_c0_g1:4338	si_s91	TRINITY_DN4107_c0_g1	4320	4347	4338	-34.70	-25.10	0.723342939481268	12.5	1-17,4347-4331;18-20,4323-4321	x-x,4330-4324[BULt];21-21,4320-4320[UP3]	.(((.......(((((((((((((((((&)))))))))))))))))-------))).	ACCGUGCACAAGAGCGGAGGAGGAGGAA&UUUCUUCUUCUUCGCUU-------CGGA	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4107_c0_g1_4338_TPlot.pdf
TRINITY_DN4107_c0_g1:6332	si_a80	TRINITY_DN4107_c0_g1	6321	6341	6332	-22.10	-15.00	0.678733031674208	12.5	5-18,6337-6324	1-4,6341-6338[UP5];19-21,6323-6321[UP3]	...((((((((((((((....&....))))))))))))))...	AGAUCUUGAUGAUGAGACAAU&UGUUUUUCAUUAUUAAGAAAA	3	0.999977200196488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN4107_c0_g1_6332_TPlot.pdf
TRINITY_DN4107_c0_g1:7089	si_a321	TRINITY_DN4107_c0_g1	7069	7098	7089	-26.70	-18.00	0.674157303370786	12.5	3-16,7096-7083;17-21,7073-7069	1-2,7098-7097[UP5];x-x,7082-7074[BULt]	(((((.........((((((((((((((..&..))))))))))))))---------)))))	GGAGUUGCCAUUGAAAAAAAAUCAUGGAGG&UAUCCAUGAUUUUUUU---------AUUCC	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN4107_c0_g1_7089_TPlot.pdf
TRINITY_DN4107_c0_g1:7090	si_a320	TRINITY_DN4107_c0_g1	7079	7099	7090	-24.40	-16.60	0.680327868852459	9	4-17,7096-7083	1-3,7099-7097[UP5];18-21,7082-7079[UP3]	....((((((((((((((...&...))))))))))))))....	UUGAAAAAAAAUCAUGGAGGU&UUAUCCAUGAUUUUUUUAUUC	2	0.999392074706159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN4107_c0_g1_7090_TPlot.pdf
TRINITY_DN4107_c0_g1:7092	si_a318	TRINITY_DN4107_c0_g1	7081	7101	7092	-22.50	-16.60	0.737777777777778	11	6-19,7096-7083	1-5,7101-7097[UP5];20-21,7082-7081[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAAAAAAAAUCAUGGAGGUUG&AUUUAUCCAUGAUUUUUUUAU	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4107_c0_g1_7092_TPlot.pdf
TRINITY_DN4107_c0_g1:7316	si_a548	TRINITY_DN4107_c0_g1	7305	7325	7316	-27.20	-19.90	0.731617647058823	5	2-8,7324-7318;10-13,7316-7313;15-21,7311-7305	1-1,7325-7325[UP5];9-9,7317-7317[SIL];14-14,7312-7312[SIL]	(((((((.((((.(((((((.&.))))))).)))).)))))))	GAGAUAAUGAAGAAGAUUGAG&UUCAAUCUAUUUCUUUAUCUC	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN4107_c0_g1_7316_TPlot.pdf
TRINITY_DN4107_c0_g1:7347	si_a769	TRINITY_DN4107_c0_g1	7336	7356	7347	-26.70	-17.40	0.651685393258427	6	1-6,7356-7351;8-12,7349-7345;14-20,7343-7337	7-7,7350-7350[SIL];13-13,7344-7344[SIL];21-21,7336-7336[UP3]	.(((((((.(((((.((((((&)))))).))))).))))))).	UGGAGUUGCAUCAAGCAAGAG&UUUUUGAUUGAUUCAACUCUU	4	0.99998465846649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN4107_c0_g1_7347_TPlot.pdf
TRINITY_DN4107_c0_g1:7348	si_a768	TRINITY_DN4107_c0_g1	7337	7357	7348	-28.40	-20.60	0.725352112676056	5.5	1-7,7357-7351;9-13,7349-7345;15-21,7343-7337	8-8,7350-7350[SIL];14-14,7344-7344[SIL]	(((((((.(((((.(((((((&))))))).))))).)))))))	GGAGUUGCAUCAAGCAAGAGC&GUUUUUGAUUGAUUCAACUCU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN4107_c0_g1_7348_TPlot.pdf
TRINITY_DN4107_c0_g1:7351	si_a765	TRINITY_DN4107_c0_g1	7340	7360	7351	-30.50	-19.90	0.652459016393443	7	2-10,7359-7351;12-16,7349-7345;18-21,7343-7340	1-1,7360-7360[UP5];11-11,7350-7350[SIL];17-17,7344-7344[SIL]	((((.(((((.(((((((((.&.))))))))).))))).))))	GUUGCAUCAAGCAAGAGCCUG&UGGGUUUUUGAUUGAUUCAAC	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN4107_c0_g1_7351_TPlot.pdf
TRINITY_DN4107_c0_g1:7369	si_s253	TRINITY_DN4107_c0_g1	7358	7379	7369	-29.50	-19.20	0.650847457627119	10.5	2-6,7378-7374;7-14,7372-7365;17-20,7362-7359	1-1,7379-7379[UP5];x-x,7373-7373[BULt];15-16,7364-7363[SIL];21-21,7358-7358[UP3]	.((((..((((((((.(((((.&.)))))-))))))))..)))).	CUGAGGUGUGUGUUGCGGAGAG&AUUUCC-CGAUAUAUUACUCAA	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN4107_c0_g1_7369_TPlot.pdf
TRINITY_DN4107_c0_g1:7399	si_s574	TRINITY_DN4107_c0_g1	7388	7408	7399	-26.20	-17.42	0.664885496183206	10	1-10,7408-7399;17-19,7392-7390	11-16,7398-7393[SIL];20-21,7389-7388[UP3]	..(((......((((((((((&))))))))))......)))..	UCGAUGUUCGGAUUCCUUGUC&GACAAGGAAUAAAAAAAUCAU	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN4107_c0_g1_7399_TPlot.pdf
TRINITY_DN4107_c0_g1:7414	si_s397	TRINITY_DN4107_c0_g1	7403	7422	7414	-32.10	-22.50	0.700934579439252	8	1-7,7422-7416;9-17,7415-7407	8-8,x-x[BULq];18-21,7406-7403[UP3]	....(((((((((-(((((((&))))))).)))))))))....	CUUGUCGUCUUUC-UGGGAUG&CAUUCCAAGGAAGACGAAAAA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN4107_c0_g1_7414_TPlot.pdf
TRINITY_DN4107_c0_g1:7416	si_s394	TRINITY_DN4107_c0_g1	7406	7425	7416	-33.40	-22.70	0.679640718562874	9.5	4-10,7422-7416;12-20,7415-7407	1-3,7425-7423[UP5];11-11,x-x[BULq];21-21,7406-7406[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	GUCGUCUUUC-UGGGAUGGUG&UUACAUUCCAAGGAAGACGAA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s394_TRINITY_DN4107_c0_g1_7416_TPlot.pdf
TRINITY_DN4107_c0_g1:7642	si_s76	TRINITY_DN4107_c0_g1	7631	7651	7642	-23.60	-15.40	0.652542372881356	17	8-19,7644-7633	1-7,7651-7645[UP5];20-21,7632-7631[UP3]	..((((((((((((.......&.......))))))))))))..	UCGAAGGGGAAGGACUUUGUU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4107_c0_g1_7642_TPlot.pdf
TRINITY_DN4108_c0_g1:2729	si_s679	TRINITY_DN4108_c0_g1	2718	2738	2729	-25.20	-16.40	0.650793650793651	7.5	1-6,2738-2733;9-19,2730-2720	7-8,2732-2731[SIL];20-21,2719-2718[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	AAUAGACUCAUGUAGUUAUAA&UUAUAGAAACAUGAGUUUAAU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN4108_c0_g1_2729_TPlot.pdf
TRINITY_DN4108_c1_g1:2328	si_s312	TRINITY_DN4108_c1_g1	2315	2337	2328	-29.00	-20.00	0.689655172413793	8.5	4-12,2334-2326;13-15,2324-2322;16-21,2320-2315	1-3,2337-2335[UP5];x-x,2325-2325[BULt];x-x,2321-2321[BULt]	((((((.(((.(((((((((...&...)))))))))-)))-))))))	UAACAAUGAGUGGACAGAAUAUU&AAAAUUCUGUCC-UUC-UUGUUA	2	0.999576262700615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4108_c1_g1_2328_TPlot.pdf
TRINITY_DN4108_c1_g1:4646	si_a629	TRINITY_DN4108_c1_g1	4636	4655	4646	-26.30	-17.70	0.673003802281369	6.5	1-15,4655-4641;18-21,4639-4636	16-17,4640-4640[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	CAGAC-AAUUGAUAUGGUACG&CGUAUUAUGUCGAUUUUUUUG	2	0.997009610118473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN4108_c1_g1_4646_TPlot.pdf
TRINITY_DN4108_c1_g1:4656	si_s790	TRINITY_DN4108_c1_g1	4645	4665	4656	-27.80	-19.20	0.690647482014388	8	3-6,4663-4660;8-16,4658-4650;18-21,4648-4645	1-2,4665-4664[UP5];7-7,4659-4659[SIL];17-17,4649-4649[SIL]	((((.(((((((((.((((..&..)))).))))))))).))))	GAUAUGGUACGGGCAUGUUAU&AAAACAAGCUCGUAUUUUAUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN4108_c1_g1_4656_TPlot.pdf
TRINITY_DN4109_c0_g1:571	si_s43	TRINITY_DN4109_c0_g1	559	580	571	-25.50	-17.20	0.674509803921569	6	1-8,580-573;10-13,571-568;14-20,566-560	9-9,572-572[SIL];x-x,567-567[BULt];21-21,559-559[UP3]	.(((((((.((((.((((((((&)))))))).))))-))))))).	GUUGAAAUACCAAAUGUUGAAG&CUUUAAUAAUUGG-AUUUCAAG	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN4109_c0_g1_571_TPlot.pdf
TRINITY_DN4109_c0_g1:574	si_s40	TRINITY_DN4109_c0_g1	562	583	574	-24.30	-16.30	0.670781893004115	8	3-11,581-573;13-16,571-568;17-21,566-562	1-2,583-582[UP5];12-12,572-572[SIL];x-x,567-567[BULt]	(((((.((((.(((((((((..&..))))))))).))))-)))))	GAAAUACCAAAUGUUGAAGAAG&AAUCUUUAAUAAUUGG-AUUUC	4	0.998853101299611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN4109_c0_g1_574_TPlot.pdf
TRINITY_DN4110_c0_g1:306	si_a407	TRINITY_DN4110_c0_g1	295	315	306	-19.80	-13.40	0.676767676767677	8.5	1-12,315-304;14-17,302-299	13-13,303-303[SIL];18-21,298-295[UP3]	....((((.((((((((((((&)))))))))))).))))....	AAAAGAAUUUGAACAGGACAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4110_c0_g1_306_TPlot.pdf
TRINITY_DN4110_c0_g1:307	si_a406	TRINITY_DN4110_c0_g1	296	316	307	-19.80	-14.70	0.742424242424242	7.5	1-13,316-304;15-18,302-299	14-14,303-303[SIL];19-21,298-296[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AAAGAAUUUGAACAGGACAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.997781799676397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4110_c0_g1_307_TPlot.pdf
TRINITY_DN4110_c0_g1:308	si_a405	TRINITY_DN4110_c0_g1	297	317	308	-19.80	-14.90	0.752525252525252	7	2-14,316-304;16-19,302-299	1-1,317-317[UP5];15-15,303-303[SIL];20-21,298-297[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	AAGAAUUUGAACAGGACAAUA&AAUUGUUUUGUUUAUAUUUAA	3	0.999960616924559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4110_c0_g1_308_TPlot.pdf
TRINITY_DN4110_c0_g1:318	si_a398	TRINITY_DN4110_c0_g1	304	328	318	-22.40	-14.80	0.660714285714286	10.5	1-6,328-323;7-10,321-318;11-21,314-304	x-x,322-322[BULt];x-x,317-315[BULt]	(((((((((((...((((.((((((&))))))-))))---)))))))))))	UGAACAGGACAAUAAUUCUUAUGUU&AAUAUA-GAAU---UGUUUUGUUUA	2	0.999998700922394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4110_c0_g1_318_TPlot.pdf
TRINITY_DN4111_c0_g1:4213	si_a67	TRINITY_DN4111_c0_g1	4202	4222	4213	-27.20	-19.10	0.702205882352941	7.5	1-11,4222-4212;13-18,4210-4205	12-12,4211-4211[SIL];19-21,4204-4202[UP3]	...((((((.(((((((((((&))))))))))).))))))...	CCUGGGCAAAUUGGAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4111_c0_g1_4213_TPlot.pdf
TRINITY_DN4111_c0_g1:4214	si_a66	TRINITY_DN4111_c0_g1	4203	4223	4214	-26.70	-19.50	0.730337078651685	6.5	2-12,4222-4212;14-19,4210-4205	1-1,4223-4223[UP5];13-13,4211-4211[SIL];20-21,4204-4203[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	CUGGGCAAAUUGGAAGAAGCU&CGCUUCUUUCAAAUUGUUUUU	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4111_c0_g1_4214_TPlot.pdf
TRINITY_DN41120_c0_g1:389	si_a397	TRINITY_DN41120_c0_g1	378	399	389	-24.00	-16.20	0.675	8	3-8,397-392;9-19,390-380	1-2,399-398[UP5];x-x,391-391[BULt];20-21,379-378[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	AUACAAAACAGUUACUAUAUGC&GAAUAUAG-AAUUGUUUUGUUU	4	0.999745850014447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN41120_c0_g1_389_TPlot.pdf
TRINITY_DN4112_c0_g1:3769	si_s764	TRINITY_DN4112_c0_g1	3758	3778	3769	-25.70	-17.00	0.66147859922179	8	1-13,3778-3766	14-21,3765-3758[UP3]	........(((((((((((((&)))))))))))))........	CUUACGCUUUAAUCGUUGUUG&CAACAACGAUUAAUUACUAUU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s764_TRINITY_DN4112_c0_g1_3769_TPlot.pdf
TRINITY_DN41138_c0_g1:54	si_a410	TRINITY_DN41138_c0_g1	43	63	54	-17.80	-11.80	0.662921348314607	7	2-7,62-57;9-18,55-46	1-1,63-63[UP5];8-8,56-56[SIL];19-21,45-43[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	AUGAUUUAAAUAUUGACAAAU&UUUUGUUUAUAUUUAAAUAAA	2	0.999999998226507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN41138_c0_g1_54_TPlot.pdf
TRINITY_DN4113_c0_g1:2607	si_s139	TRINITY_DN4113_c0_g1	2596	2615	2607	-30.10	-22.20	0.737541528239203	9	3-8,2613-2608;12-21,2605-2596	1-2,2615-2614[UP5];9-11,2607-2606[AILq]	((((((((((..-((((((..&..))))))...))))))))))	CCUUUGGGUUGA-GAUUGACA&AAUCAAUCAAAAACCCAAAGG	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s139_TRINITY_DN4113_c0_g1_2607_TPlot.pdf
TRINITY_DN4113_c0_g1:3008	si_s79	TRINITY_DN4113_c0_g1	2995	3017	3008	-26.20	-17.20	0.656488549618321	8	2-10,3016-3008;11-14,3006-3003;15-19,3001-2997	1-1,3017-3017[UP5];x-x,3007-3007[BULt];x-x,3002-3002[BULt];20-21,2996-2995[UP3]	..(((((.((((.(((((((((.&.)))))))))-))))-)))))..	CCGAGGACGAGGCAAAGAGAAAU&UUUUUUCUUU-CCUU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4113_c0_g1_3008_TPlot.pdf
TRINITY_DN4113_c0_g1:6159	si_s605	TRINITY_DN4113_c0_g1	6148	6167	6159	-27.50	-18.10	0.658181818181818	10.5	3-6,6165-6162;8-11,6161-6158;14-21,6155-6148	1-2,6167-6166[UP5];7-7,x-x[BULq];12-13,6157-6156[SIL]	((((((((..((((-((((..&..)))).))))..))))))))	GGAUUUGAUUGAGG-UCGCAA&AAGCGAAUCUUUUUUAAAUCC	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN4113_c0_g1_6159_TPlot.pdf
TRINITY_DN4114_c0_g1:1190	si_s71	TRINITY_DN4114_c0_g1	1179	1200	1190	-25.70	-18.50	0.719844357976654	8.5	1-8,1200-1193;9-19,1191-1181	x-x,1192-1192[BULt];20-21,1180-1179[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	UUGAAAGGAGGAGCAGUAGAAG&CUUCUAUU-UUUUUUCUUUCCU	3	0.999999999994422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4114_c0_g1_1190_TPlot.pdf
TRINITY_DN4114_c0_g1:1574	si_a499	TRINITY_DN4114_c0_g1	1552	1583	1574	-35.20	-25.50	0.724431818181818	25	1-11,1583-1573;12-20,1561-1553	x-x,1572-1562[BULt];21-21,1552-1552[UP3]	.(((((((((...........(((((((((((&)))))))))))-----------))))))))).	ACAAGGAAGAAAAGCGGAAAUCGAAGGACGAC&GUCGUUUUUCG-----------UCUUCCUUGG	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4114_c0_g1_1574_TPlot.pdf
TRINITY_DN4114_c0_g1:1575	si_a498	TRINITY_DN4114_c0_g1	1553	1584	1575	-33.50	-26.00	0.776119402985075	24	1-12,1584-1573;13-21,1561-1553	x-x,1572-1562[BULt]	(((((((((...........((((((((((((&))))))))))))-----------)))))))))	CAAGGAAGAAAAGCGGAAAUCGAAGGACGACA&UGUCGUUUUUCG-----------UCUUCCUUG	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4114_c0_g1_1575_TPlot.pdf
TRINITY_DN4114_c0_g1:1576	si_a497	TRINITY_DN4114_c0_g1	1554	1585	1576	-32.00	-22.90	0.715625	14	2-13,1584-1573;14-21,1561-1554	1-1,1585-1585[UP5];x-x,1572-1562[BULt]	((((((((...........((((((((((((.&.))))))))))))-----------))))))))	AAGGAAGAAAAGCGGAAAUCGAAGGACGACAA&AUGUCGUUUUUCG-----------UCUUCCUU	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4114_c0_g1_1576_TPlot.pdf
TRINITY_DN4114_c0_g1:1636	si_s79	TRINITY_DN4114_c0_g1	1624	1645	1636	-26.20	-17.30	0.66030534351145	7.5	1-14,1645-1632;15-18,1630-1627	x-x,1631-1631[BULt];19-21,1626-1624[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	AAAAGGACAAGGAGAGGGAAAA&UUUUUUCUUUCCUU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4114_c0_g1_1636_TPlot.pdf
TRINITY_DN4114_c0_g1:1637	si_a329	TRINITY_DN4114_c0_g1	1626	1647	1637	-29.60	-20.10	0.679054054054054	9	1-8,1647-1640;10-19,1637-1628	9-9,1639-1638[AILt];20-21,1627-1626[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	AAGGACAAGGAGAGGGAAAAAU&AUUUUUUU-AUUCCUUGUCCCG	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4114_c0_g1_1637_TPlot.pdf
TRINITY_DN4114_c0_g1:1641	si_a326	TRINITY_DN4114_c0_g1	1629	1650	1641	-26.20	-20.70	0.790076335877863	9.5	3-11,1648-1640;13-21,1637-1629	1-2,1650-1649[UP5];12-12,1639-1638[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	GACAAGGAGAGGGAAAAAUCGC&AUGAUUUUUUU-AUUCCUUGUC	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4114_c0_g1_1641_TPlot.pdf
TRINITY_DN4114_c0_g1:1642	si_a325	TRINITY_DN4114_c0_g1	1630	1651	1642	-25.90	-17.50	0.675675675675676	10.5	4-12,1648-1640;14-21,1637-1630	1-3,1651-1649[UP5];13-13,1639-1638[AILt]	((((((((..(((((((((...&...)))))))))-.))))))))	ACAAGGAGAGGGAAAAAUCGCC&CAUGAUUUUUUU-AUUCCUUGU	3	0.999992952957843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN4114_c0_g1_1642_TPlot.pdf
TRINITY_DN4114_c0_g1:1643	si_s72	TRINITY_DN4114_c0_g1	1632	1652	1643	-24.10	-15.90	0.659751037344398	13	7-21,1646-1632	1-6,1652-1647[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGAGAGGGAAAAAUCGCCA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4114_c0_g1_1643_TPlot.pdf
TRINITY_DN4114_c0_g1:1771	si_s81	TRINITY_DN4114_c0_g1	1760	1780	1771	-28.90	-19.00	0.657439446366782	6	1-9,1780-1772;11-19,1770-1762	10-10,1771-1771[SIL];20-21,1761-1760[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UAAAGAAGAGAAGAAGGAAAA&UUUUCUUUCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4114_c0_g1_1771_TPlot.pdf
TRINITY_DN4114_c0_g1:1772	si_s80	TRINITY_DN4114_c0_g1	1761	1781	1772	-28.20	-19.90	0.705673758865248	4.5	1-10,1781-1772;12-20,1770-1762	11-11,1771-1771[SIL];21-21,1761-1761[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AAAGAAGAGAAGAAGGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4114_c0_g1_1772_TPlot.pdf
TRINITY_DN4114_c0_g1:1773	si_s79	TRINITY_DN4114_c0_g1	1762	1782	1773	-26.20	-20.10	0.767175572519084	4.5	2-11,1781-1772;13-21,1770-1762	1-1,1782-1782[UP5];12-12,1771-1771[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AAGAAGAGAAGAAGGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	3	0.99999999873322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4114_c0_g1_1773_TPlot.pdf
TRINITY_DN4114_c0_g1:1774	si_s78	TRINITY_DN4114_c0_g1	1763	1783	1774	-26.20	-20.70	0.790076335877863	3.5	1-12,1783-1772;14-21,1770-1763	13-13,1771-1771[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGAAGAGAAGAAGGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4114_c0_g1_1774_TPlot.pdf
TRINITY_DN4114_c0_g1:1775	si_s77	TRINITY_DN4114_c0_g1	1764	1784	1775	-25.50	-19.60	0.768627450980392	4.5	2-13,1783-1772;15-21,1770-1764	1-1,1784-1784[UP5];14-14,1771-1771[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GAAGAGAAGAAGGAAAAAGAU&UUUUUUUUCUUUCCUUUCUUC	3	0.999999998783484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4114_c0_g1_1775_TPlot.pdf
TRINITY_DN4114_c0_g1:1799	si_s76	TRINITY_DN4114_c0_g1	1786	1808	1799	-23.60	-17.20	0.728813559322034	7.5	1-12,1808-1797;13-17,1795-1791;18-21,1789-1786	x-x,1796-1796[BULt];x-x,1790-1790[BULt]	((((.(((((.((((((((((((&))))))))))))-)))))-))))	GAGACAAGGACAAGAAGGAGGAU&AUUUUUUUUCUU-UCCUU-UCUU	2	0.999999999999855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4114_c0_g1_1799_TPlot.pdf
TRINITY_DN4114_c0_g1:1800	si_s75	TRINITY_DN4114_c0_g1	1787	1809	1800	-24.00	-17.30	0.720833333333333	6	1-13,1809-1797;14-18,1795-1791;19-21,1789-1787	x-x,1796-1796[BULt];x-x,1790-1790[BULt]	(((.(((((.(((((((((((((&)))))))))))))-)))))-)))	AGACAAGGACAAGAAGGAGGAUA&UAUUUUUUUUCUU-UCCUU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4114_c0_g1_1800_TPlot.pdf
TRINITY_DN4114_c0_g1:1803	si_s72	TRINITY_DN4114_c0_g1	1791	1813	1803	-24.10	-17.20	0.713692946058091	7	1-4,1813-1810;5-16,1808-1797;17-21,1795-1791	x-x,1809-1809[BULt];x-x,1796-1796[BULt]	(((((.((((((((((((.((((&))))-))))))))))))-)))))	AAGGACAAGAAGGAGGAUAAGAA&UUCU-AUUUUUUUUCUU-UCCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4114_c0_g1_1803_TPlot.pdf
TRINITY_DN4114_c0_g1:1819	si_a497	TRINITY_DN4114_c0_g1	1800	1828	1819	-32.00	-21.10	0.659375	12.5	2-5,1827-1824;7-13,1822-1816;14-21,1807-1800	1-1,1828-1828[UP5];6-6,1823-1823[SIL];x-x,1815-1808[BULt]	((((((((........(((((((.((((.&.)))).)))))))--------))))))))	AAGGAGGAUAAGAAAUCGAAGAAGGACAA&AUGUCGUUUUUCG--------UCUUCCUU	2	0.999999999978887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4114_c0_g1_1819_TPlot.pdf
TRINITY_DN4114_c0_g1:1936	si_a675	TRINITY_DN4114_c0_g1	1923	1945	1936	-34.00	-22.28	0.655294117647059	8	1-12,1945-1934;15-21,1929-1923	13-14,1933-1930[AILt]	(((((((....((((((((((((&))))))))))))--..)))))))	AAAUCGUCCAGGGAUAAGGAAUC&GAUUCCUUAUUC--ACGCGGUUU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN4114_c0_g1_1936_TPlot.pdf
TRINITY_DN4114_c0_g1:1943	si_a668	TRINITY_DN4114_c0_g1	1932	1952	1943	-33.20	-21.98	0.662048192771084	9	1-3,1952-1950;7-19,1946-1934	4-6,1949-1947[SIL];20-21,1933-1932[UP3]	..(((((((((((((...(((&)))...)))))))))))))..	AGGGAUAAGGAAUCAUCUGGU&GCCUAUUGAUUCCUUAUUCAC	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN4114_c0_g1_1943_TPlot.pdf
TRINITY_DN4114_c0_g1:1944	si_a667	TRINITY_DN4114_c0_g1	1933	1953	1944	-32.10	-22.98	0.71588785046729	8.5	1-4,1953-1950;8-20,1946-1934	5-7,1949-1947[SIL];21-21,1933-1933[UP3]	.(((((((((((((...((((&))))...))))))))))))).	GGGAUAAGGAAUCAUCUGGUA&UGCCUAUUGAUUCCUUAUUCA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN4114_c0_g1_1944_TPlot.pdf
TRINITY_DN4114_c0_g1:1945	si_a666	TRINITY_DN4114_c0_g1	1934	1954	1945	-31.60	-22.58	0.714556962025316	8.5	2-5,1953-1950;9-21,1946-1934	1-1,1954-1954[UP5];6-8,1949-1947[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	GGAUAAGGAAUCAUCUGGUAA&AUGCCUAUUGAUUCCUUAUUC	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN4114_c0_g1_1945_TPlot.pdf
TRINITY_DN4114_c0_g1:2078	si_s72	TRINITY_DN4114_c0_g1	2067	2090	2078	-24.10	-16.10	0.66804979253112	14.5	2-8,2089-2083;12-21,2076-2067	1-1,2090-2090[UP5];9-11,2082-2077[AILt]	((((((((((......(((((((.&.)))))))---...))))))))))	GAGGAAAGAACUGACCGAAUAGAC&UUCUAUUU---UUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4114_c0_g1_2078_TPlot.pdf
TRINITY_DN4114_c0_g1:2142	si_s75	TRINITY_DN4114_c0_g1	2126	2151	2142	-24.00	-15.80	0.658333333333333	8.5	1-14,2151-2138;15-18,2136-2133;19-21,2128-2126	x-x,2137-2137[BULt];x-x,2132-2129[BULt]	(((....((((.((((((((((((((&))))))))))))))-))))----)))	AGAAUCCGAGGAAAAGGAAAAGGAUA&UAUUUUUUUUCUUU-CCUU----UCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4114_c0_g1_2142_TPlot.pdf
TRINITY_DN4114_c0_g1:2233	si_s72	TRINITY_DN4114_c0_g1	2222	2242	2233	-24.10	-19.40	0.804979253112033	5.5	1-4,2242-2239;6-20,2237-2223	5-5,2238-2238[SIL];21-21,2222-2222[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	UAGGAAGGAGAAAAAAGAGGA&UUCUAUUUUUUUUCUUUCCUU	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4114_c0_g1_2233_TPlot.pdf
TRINITY_DN4114_c0_g1:2266	si_a789	TRINITY_DN4114_c0_g1	2255	2275	2266	-24.80	-18.20	0.733870967741935	8	1-2,2275-2274;4-18,2272-2258	3-3,2273-2273[SIL];19-21,2257-2255[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	GAAGGAGGAUAGGAAGAUCGA&UCUAUUUUUCUAUUUUCCAAU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4114_c0_g1_2266_TPlot.pdf
TRINITY_DN4114_c0_g1:2700	si_a495	TRINITY_DN4114_c0_g1	2689	2709	2700	-31.90	-23.80	0.746081504702194	10	5-14,2705-2696;16-21,2694-2689	1-4,2709-2706[UP5];15-15,2695-2695[SIL]	((((((.((((((((((....&....)))))))))).))))))	GGAAGAGGAAAAGCGAUCCGA&AUAUGUCGUUUUUCGUCUUCC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4114_c0_g1_2700_TPlot.pdf
TRINITY_DN4114_c0_g1:4099	si_s81	TRINITY_DN4114_c0_g1	4087	4108	4099	-28.90	-18.80	0.650519031141869	9.5	1-5,4108-4104;7-11,4102-4098;13-21,4095-4087	6-6,4103-4103[SIL];12-12,4097-4096[AILt]	(((((((((..(((((.(((((&))))).)))))-.)))))))))	AGGAGAGGACUAGGGGCGAAAG&UUUUCUUUCCU-UUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4114_c0_g1_4099_TPlot.pdf
TRINITY_DN4114_c0_g1:473	si_s584	TRINITY_DN4114_c0_g1	462	482	473	-26.30	-17.20	0.653992395437262	11	6-12,477-471;15-21,468-462	1-5,482-478[UP5];13-14,470-469[SIL]	(((((((..(((((((.....&.....)))))))..)))))))	GGAUUUACACAUGAUUGGGAA&AAAAAAAUCAUGGAUAAAUCC	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s584_TRINITY_DN4114_c0_g1_473_TPlot.pdf
TRINITY_DN4115_c0_g2:3787	si_s473	TRINITY_DN4115_c0_g2	3777	3797	3787	-31.80	-21.10	0.663522012578616	4	1-9,3797-3789;10-12,3787-3785;14-20,3784-3778	x-x,3788-3788[BULt];13-13,x-x[BULq];21-21,3777-3777[UP3]	.(((((((-(((.(((((((((&)))))))))-))).))))))).	AAAAUAUA-GAUACCGUUGGAU&AUCCAACGG-AUCCUAUAUUUA	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN4115_c0_g2_3787_TPlot.pdf
TRINITY_DN4115_c0_g2:4036	si_a77	TRINITY_DN4115_c0_g2	4025	4045	4036	-22.20	-14.50	0.653153153153153	7.5	2-15,4044-4031	1-1,4045-4045[UP5];16-21,4030-4025[UP3]	......((((((((((((((.&.))))))))))))))......	AAACAUUGAUGAAAAACAAUA&AAUUGUUUUUCAUUAUUAAGA	4	0.999999999428223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN4115_c0_g2_4036_TPlot.pdf
TRINITY_DN4115_c0_g2:4037	si_a76	TRINITY_DN4115_c0_g2	4026	4046	4037	-21.20	-14.50	0.683962264150943	8.5	3-16,4044-4031	1-2,4046-4045[UP5];17-21,4030-4026[UP3]	.....((((((((((((((..&..)))))))))))))).....	AACAUUGAUGAAAAACAAUAU&AAAUUGUUUUUCAUUAUUAAG	2	0.999936891661079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN4115_c0_g2_4037_TPlot.pdf
TRINITY_DN4115_c0_g2:4038	si_a75	TRINITY_DN4115_c0_g2	4027	4047	4038	-21.30	-14.90	0.699530516431925	6.5	1-2,4047-4046;4-17,4044-4031	3-3,4045-4045[SIL];18-21,4030-4027[UP3]	....((((((((((((((.((&)).))))))))))))))....	ACAUUGAUGAAAAACAAUAUG&CAAAUUGUUUUUCAUUAUUAA	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN4115_c0_g2_4038_TPlot.pdf
TRINITY_DN4115_c0_g2:4039	si_a74	TRINITY_DN4115_c0_g2	4028	4048	4039	-22.20	-14.90	0.671171171171171	6.5	2-3,4047-4046;5-18,4044-4031	1-1,4048-4048[UP5];4-4,4045-4045[SIL];19-21,4030-4028[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	CAUUGAUGAAAAACAAUAUGU&UCAAAUUGUUUUUCAUUAUUA	2	0.999987485930559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4115_c0_g2_4039_TPlot.pdf
TRINITY_DN4115_c0_g2:4040	si_a73	TRINITY_DN4115_c0_g2	4029	4049	4040	-21.90	-14.90	0.680365296803653	7.5	3-4,4047-4046;6-19,4044-4031	1-2,4049-4048[UP5];5-5,4045-4045[SIL];20-21,4030-4029[UP3]	..((((((((((((((.((..&..)).))))))))))))))..	AUUGAUGAAAAACAAUAUGUC&UUCAAAUUGUUUUUCAUUAUU	4	0.999999998292486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN4115_c0_g2_4040_TPlot.pdf
TRINITY_DN4115_c0_g2:4041	si_a72	TRINITY_DN4115_c0_g2	4030	4050	4041	-21.90	-14.90	0.680365296803653	8.5	4-5,4047-4046;7-20,4044-4031	1-3,4050-4048[UP5];6-6,4045-4045[SIL];21-21,4030-4030[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	UUGAUGAAAAACAAUAUGUCC&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999154983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4115_c0_g2_4041_TPlot.pdf
TRINITY_DN4116_c0_g1:2077	si_a633	TRINITY_DN4116_c0_g1	2064	2086	2077	-26.40	-17.28	0.654545454545455	8	1-14,2086-2073;17-19,2068-2066	15-16,2072-2069[AILt];20-21,2065-2064[UP3]	..(((....((((((((((((((&))))))))))))))--..)))..	UCCUCUUCCGAAAAUCGACAUGG&UUAUGUCGAUUUUU--UUGAGUA	4	0.999999999997593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4116_c0_g1_2077_TPlot.pdf
TRINITY_DN4116_c0_g1:2078	si_a632	TRINITY_DN4116_c0_g1	2065	2087	2078	-26.10	-18.88	0.723371647509578	7.5	1-15,2087-2073;18-20,2068-2066	16-17,2072-2069[AILt];21-21,2065-2065[UP3]	.(((....(((((((((((((((&)))))))))))))))--..))).	CCUCUUCCGAAAAUCGACAUGGU&AUUAUGUCGAUUUUU--UUGAGU	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4116_c0_g1_2078_TPlot.pdf
TRINITY_DN4116_c0_g1:2084	si_a626	TRINITY_DN4116_c0_g1	2073	2092	2084	-30.20	-21.40	0.708609271523179	7.5	2-4,2091-2089;6-21,2088-2073	1-1,2092-2092[UP5];5-5,x-x[BULq]	((((((((((((((((-(((.&.))).))))))))))))))))	GAAAAUCGACAUGGUG-GCUG&AGGCGUAUUAUGUCGAUUUUU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN4116_c0_g1_2084_TPlot.pdf
TRINITY_DN4118_c0_g1:1547	si_a414	TRINITY_DN4118_c0_g1	1530	1556	1547	-18.10	-13.60	0.751381215469613	14.5	1-12,1556-1545;13-21,1538-1530	x-x,1544-1539[BULt]	(((((((((......((((((((((((&))))))))))))------)))))))))	UAUAUUUGUAUUGAAUUAAAUAUGAGC&GUUUAUAUUUAA------AUAAAUAUA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN4118_c0_g1_1547_TPlot.pdf
TRINITY_DN411_c0_g1:1556	si_a325	TRINITY_DN411_c0_g1	1543	1565	1556	-25.90	-19.58	0.755984555984556	9.5	1-12,1565-1554;15-21,1549-1543	13-14,1553-1550[AILt]	(((((((....((((((((((((&))))))))))))--..)))))))	ACGAGGAGAUGAAGAAGAUCGUG&CAUGAUUUUUUU--AUUCCUUGU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN411_c0_g1_1556_TPlot.pdf
TRINITY_DN411_c0_g1:2339	si_s288	TRINITY_DN411_c0_g1	2327	2348	2339	-35.10	-23.20	0.660968660968661	9	3-7,2346-2342;10-17,2339-2332;18-21,2330-2327	1-2,2348-2347[UP5];8-9,2341-2340[SIL];x-x,2331-2331[BULt]	((((.((((((((..(((((..&..)))))..))))))))-))))	GAUUGCCGAUCGAGGAGGCGAU&UACGCCUAGUCGAUUGG-AAUU	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN411_c0_g1_2339_TPlot.pdf
TRINITY_DN411_c0_g1:3539	si_a428	TRINITY_DN411_c0_g1	3528	3548	3539	-31.80	-21.70	0.682389937106918	9	3-14,3546-3535;16-19,3533-3530	1-2,3548-3547[UP5];15-15,3534-3534[SIL];20-21,3529-3528[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	CUUCCAUCGGGUUCUGUAUCC&AAAUAUAGGAUCCGUUGGAUA	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN411_c0_g1_3539_TPlot.pdf
TRINITY_DN411_c0_g1:3541	si_a426	TRINITY_DN411_c0_g1	3530	3550	3541	-31.80	-21.60	0.679245283018868	10.5	5-16,3546-3535;18-21,3533-3530	1-4,3550-3547[UP5];17-17,3534-3534[SIL]	((((.((((((((((((....&....)))))))))))).))))	UCCAUCGGGUUCUGUAUCCUU&AUAAAUAUAGGAUCCGUUGGA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN411_c0_g1_3541_TPlot.pdf
TRINITY_DN411_c0_g1:3747	si_s174	TRINITY_DN411_c0_g1	3736	3755	3747	-39.00	-25.50	0.653846153846154	9.5	1-4,3755-3752;7-14,3750-3743;16-20,3741-3737	5-6,3751-3751[AILq];15-15,3742-3742[SIL];21-21,3736-3736[UP3]	.(((((.((((((((.-((((&))))..)))))))).))))).	UUUGCUGGGGCGUUUA-GCCC&GGGUAAAGAUGCCCGAGUAAC	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN411_c0_g1_3747_TPlot.pdf
TRINITY_DN411_c0_g1:3831	si_a177	TRINITY_DN411_c0_g1	3822	3840	3831	-32.90	-23.88	0.725835866261398	6.5	1-11,3840-3830;16-21,3827-3822	12-15,3829-3828[AILq]	((((((..--(((((((((((&)))))))))))....))))))	GAAGGAGC--AUCUAGGCGGG&CCCGUCUAGAUAAUAUCUUUC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a177_TRINITY_DN411_c0_g1_3831_TPlot.pdf
TRINITY_DN411_c0_g1:3832	si_a176	TRINITY_DN411_c0_g1	3823	3841	3832	-31.70	-21.28	0.671293375394322	6.5	2-12,3840-3830;17-21,3827-3823	1-1,3841-3841[UP5];13-16,3829-3828[AILq]	(((((..--(((((((((((.&.)))))))))))....)))))	AAGGAGC--AUCUAGGCGGGC&ACCCGUCUAGAUAAUAUCUUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN411_c0_g1_3832_TPlot.pdf
TRINITY_DN411_c0_g1:4010	si_s537	TRINITY_DN411_c0_g1	3999	4020	4010	-26.40	-17.30	0.65530303030303	11.5	3-7,4018-4014;9-19,4011-4001	1-2,4020-4019[UP5];8-8,4013-4012[AILt];20-21,4000-3999[UP3]	..(((((((((((..(((((..&..)))))-.)))))))))))..	CUUUUUGGUCGGAGCCGAGACG&AUUUUUG-AUCCGAUCAAAAUA	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN411_c0_g1_4010_TPlot.pdf
TRINITY_DN411_c0_g1:4693	si_a313	TRINITY_DN411_c0_g1	4680	4702	4693	-28.70	-19.30	0.672473867595819	9	2-13,4701-4690;15-21,4686-4680	1-1,4702-4702[UP5];14-14,4689-4687[AILt]	(((((((...((((((((((((.&.))))))))))))--.)))))))	GGAAUCAGGAGGAUGAGUCCGGC&CUUGGAUUUAUCC--AUGAUUUU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN411_c0_g1_4693_TPlot.pdf
TRINITY_DN411_c0_g1:4749	si_a800	TRINITY_DN411_c0_g1	4738	4761	4749	-33.70	-22.24	0.659940652818991	12.5	1-7,4761-4755;9-20,4750-4739	8-8,4754-4751[AILt];21-21,4738-4738[UP3]	.((((((((((((....(((((((&)))))))---.)))))))))))).	AUUUGCUUCGGAUCGAGGGGGAGU&AUUUUCC---AAUCCGAAGCGAAG	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN411_c0_g1_4749_TPlot.pdf
TRINITY_DN411_c0_g1:6599	si_a383	TRINITY_DN411_c0_g1	6588	6608	6599	-24.80	-16.30	0.657258064516129	8	1-12,6608-6597;14-16,6595-6593	13-13,6596-6596[SIL];17-21,6592-6588[UP3]	.....(((.((((((((((((&)))))))))))).))).....	AUGCCUCUCAAUUCGGAGUCA&UGAUUUCGAAUUAAGAAUAUA	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a383_TRINITY_DN411_c0_g1_6599_TPlot.pdf
TRINITY_DN41216_c0_g1:362	si_a887	TRINITY_DN41216_c0_g1	351	371	362	-22.90	-15.00	0.655021834061135	7.5	4-10,368-362;12-21,360-351	1-3,371-369[UP5];11-11,361-361[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUAUUAUUGCCAUAUUGAGCG&CAAUCAAUAUAGUAAUAAUAA	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN41216_c0_g1_362_TPlot.pdf
TRINITY_DN4121_c0_g1:1004	si_s85	TRINITY_DN4121_c0_g1	986	1013	1004	-33.80	-22.50	0.665680473372781	14.5	1-2,1013-1012;4-14,1010-1000;15-21,992-986	3-3,1011-1011[SIL];x-x,999-993[BULt]	(((((((.......(((((((((((.((&)).)))))))))))-------)))))))	GCGGAGGUGGUUUUGGAGGAAGGGGUGG&CUUUCCUUUCUUCU-------UCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4121_c0_g1_1004_TPlot.pdf
TRINITY_DN4121_c0_g1:1184	si_a413	TRINITY_DN4121_c0_g1	1172	1193	1184	-18.40	-13.00	0.706521739130435	6.5	2-10,1192-1184;11-21,1182-1172	1-1,1193-1193[UP5];x-x,1183-1183[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	AUGUUUAUUUGUAAUGUAAAUU&UGUUUAUAUU-UAAAUAAAUAU	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN4121_c0_g1_1184_TPlot.pdf
TRINITY_DN4121_c0_g1:997	si_s524	TRINITY_DN4121_c0_g1	986	1006	997	-23.90	-15.80	0.661087866108787	10	1-2,1006-1005;5-20,1002-987	3-4,1004-1003[SIL];21-21,986-986[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	GCGGAGGUGGUUUUGGAGGAA&UUAAUUCGAAAUCAUUUUUGA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN4121_c0_g1_997_TPlot.pdf
TRINITY_DN4122_c0_g1:1094	si_a254	TRINITY_DN4122_c0_g1	1084	1102	1094	-38.80	-26.90	0.693298969072165	5.5	1-8,1102-1095;10-10,1094-1094;12-21,1093-1084	9-9,x-x[BULq];11-11,x-x[BULq]	((((((((((-(-((((((((&)))))))).).))))))))))	UUUGUCCUCG-U-CGAUCGGG&CCCGAUUGUAUCGAGGGCAAA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN4122_c0_g1_1094_TPlot.pdf
TRINITY_DN4122_c0_g1:470	si_s372	TRINITY_DN4122_c0_g1	459	478	470	-45.70	-31.50	0.689277899343545	7	2-5,477-474;7-10,473-470;12-15,468-465;17-21,463-459	1-1,478-478[UP5];6-6,x-x[BULq];11-11,469-469[SIL];16-16,464-464[SIL]	(((((.((((.((((-((((.&.)))).)))).)))).)))))	GCGGAGACGCUGGCG-UCGGC&ACCGAUCGCUCGCGUGUCCGC	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN4122_c0_g1_470_TPlot.pdf
TRINITY_DN4122_c0_g1:471	si_s371	TRINITY_DN4122_c0_g1	460	479	471	-43.20	-28.10	0.650462962962963	9	3-6,477-474;8-11,473-470;13-16,468-465;18-21,463-460	1-2,479-478[UP5];7-7,x-x[BULq];12-12,469-469[SIL];17-17,464-464[SIL]	((((.((((.((((-((((..&..)))).)))).)))).))))	CGGAGACGCUGGCG-UCGGCU&AACCGAUCGCUCGCGUGUCCG	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN4122_c0_g1_471_TPlot.pdf
TRINITY_DN4122_c0_g1:886	si_a561	TRINITY_DN4122_c0_g1	874	894	886	-35.40	-23.10	0.652542372881356	8	2-6,893-889;8-14,888-882;16-20,879-875	1-1,894-894[UP5];7-7,x-x[BULq];15-15,881-880[AILt];21-21,874-874[UP3]	.(((((..(((((((-(((((.&.))))).)))))))-.))))).	GACGAUGACAUGGGG-GAUGAU&UUUAUCUCCCCGUG-AAUCGUA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN4122_c0_g1_886_TPlot.pdf
TRINITY_DN4122_c0_g1:978	si_s630	TRINITY_DN4122_c0_g1	967	987	978	-35.60	-23.20	0.651685393258427	10	3-18,985-970	1-2,987-986[UP5];19-21,969-967[UP3]	...((((((((((((((((..&..))))))))))))))))...	GACGAUGCCUACGGAGAGGGA&GAUCUUUUCGUAGGCGUUUGC	2	0.999328428026691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN4122_c0_g1_978_TPlot.pdf
TRINITY_DN4122_c0_g1:979	si_s629	TRINITY_DN4122_c0_g1	968	988	979	-34.60	-23.20	0.670520231213873	11	4-19,985-970	1-3,988-986[UP5];20-21,969-968[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACGAUGCCUACGGAGAGGGAC&CGAUCUUUUCGUAGGCGUUUG	2	0.984539391222183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN4122_c0_g1_979_TPlot.pdf
TRINITY_DN41238_c0_g1:536	si_s201	TRINITY_DN41238_c0_g1	525	545	536	-33.60	-23.30	0.693452380952381	5	1-5,545-541;7-21,539-525	6-6,540-540[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	ACAUAAUUGGUACAUAUCGAA&UUUGGAAUGUACCAGUUGUGU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN41238_c0_g1_536_TPlot.pdf
TRINITY_DN4126_c0_g1:1803	si_a421	TRINITY_DN4126_c0_g1	1792	1812	1803	-26.40	-21.00	0.795454545454546	10.5	6-20,1807-1793	1-5,1812-1808[UP5];21-21,1792-1792[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGGGUCCUAUAUUUAUAAACA&UUUAAAUAAAUAUAGGAUCCG	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN4126_c0_g1_1803_TPlot.pdf
TRINITY_DN4127_c0_g2:371	si_s699	TRINITY_DN4127_c0_g2	360	380	371	-28.60	-19.20	0.671328671328671	8	1-9,380-372;11-18,370-363;21-21,360-360	10-10,371-371[SIL];19-20,362-361[SIL]	(..((((((((.(((((((((&))))))))).))))))))..)	GGCCGCUGAUAUAUUGGCUGA&UUAGUCGAUUUAUUAGUGAAC	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN4127_c0_g2_371_TPlot.pdf
TRINITY_DN4127_c0_g2:372	si_s698	TRINITY_DN4127_c0_g2	361	381	372	-27.00	-19.10	0.707407407407407	9	2-10,380-372;12-19,370-363	1-1,381-381[UP5];11-11,371-371[SIL];20-21,362-361[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	GCCGCUGAUAUAUUGGCUGAA&AUUAGUCGAUUUAUUAGUGAA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN4127_c0_g2_372_TPlot.pdf
TRINITY_DN4129_c0_g1:332	si_s69	TRINITY_DN4129_c0_g1	321	342	332	-23.40	-15.28	0.652991452991453	14	1-9,342-334;15-21,327-321	10-14,333-328[AILt]	(((((((......(((((((((&)))))))))-.....)))))))	GAAGGAGUUCCAUGUGGAGGUU&AACUUCUAU-UUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4129_c0_g1_332_TPlot.pdf
TRINITY_DN4129_c0_g1:791	si_a495	TRINITY_DN4129_c0_g1	777	800	791	-31.90	-21.60	0.677115987460815	14.5	1-10,800-791;14-21,784-777	11-13,790-785[AILt]	((((((((......((((((((((&))))))))))---...))))))))	GGGGGAUGUGUGAUGACGGCAUAU&AUAUGUCGUU---UUUCGUCUUCC	3	0.999999877072956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4129_c0_g1_791_TPlot.pdf
TRINITY_DN412_c0_g1:1473	si_s71	TRINITY_DN412_c0_g1	1459	1483	1473	-25.70	-18.50	0.719844357976654	8	1-5,1483-1479;6-15,1477-1468;16-21,1464-1459	x-x,1478-1478[BULt];x-x,1467-1465[BULt]	((((((...((((((((((.(((((&)))))-))))))))))---))))))	AGGAAAUUCGAAGAGAGAUAAGAAG&CUUCU-AUUUUUUUUC---UUUCCU	4	0.999999999997041	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN412_c0_g1_1473_TPlot.pdf
TRINITY_DN412_c0_g1:3541	si_a455	TRINITY_DN412_c0_g1	3530	3551	3541	-21.10	-15.30	0.725118483412322	8	3-9,3549-3543;11-21,3540-3530	1-2,3551-3550[UP5];10-10,3542-3541[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	AUAUUAUAUAUUUGCAACAACC&AAUUGUUGU-UAUAUAUAAUAU	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN412_c0_g1_3541_TPlot.pdf
TRINITY_DN412_c0_g2:3223	si_a72	TRINITY_DN412_c0_g2	3212	3232	3223	-21.90	-15.30	0.698630136986301	8	1-16,3232-3217	17-21,3216-3212[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGCACGAAAAAUAAUUUGGGA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN412_c0_g2_3223_TPlot.pdf
TRINITY_DN412_c0_g2:3224	si_a71	TRINITY_DN412_c0_g2	3213	3233	3224	-23.30	-15.50	0.665236051502146	8	2-17,3232-3217	1-1,3233-3233[UP5];18-21,3216-3213[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCACGAAAAAUAAUUUGGGAA&CUUUCAAAUUGUUUUUCAUUA	3	0.999999999962595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN412_c0_g2_3224_TPlot.pdf
TRINITY_DN412_c1_g1:2471	si_a142	TRINITY_DN412_c1_g1	2460	2480	2471	-23.50	-16.40	0.697872340425532	11.5	6-21,2475-2460	1-5,2480-2476[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAGAAUAGCAAUGAUGAUAG&AAUUAAUCGUUGUUGUUUUAA	4	0.999999762880908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN412_c1_g1_2471_TPlot.pdf
TRINITY_DN412_c1_g1:463	si_a23	TRINITY_DN412_c1_g1	450	472	463	-22.80	-14.98	0.657017543859649	9	3-16,470-457;19-21,452-450	1-2,472-471[UP5];17-18,456-453[AILt]	(((....((((((((((((((..&..))))))))))))))--..)))	UCUGAUUGAACUAAAAGUGAAGA&UAUUUAUUUUUAGUUC--UAAGA	2	0.999930284539678	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN412_c1_g1_463_TPlot.pdf
TRINITY_DN41317_c0_g1:1760	si_a868	TRINITY_DN41317_c0_g1	1750	1769	1760	-24.80	-16.80	0.67741935483871	6.5	1-10,1769-1760;12-19,1759-1752	11-11,x-x[BULq];20-21,1751-1750[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	UACAACUGAA-CUUUGAUAGU&AUUAUUAAAGAUUUAGUUGCA	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN41317_c0_g1_1760_TPlot.pdf
TRINITY_DN41317_c0_g1:1761	si_a867	TRINITY_DN41317_c0_g1	1751	1770	1761	-24.10	-17.10	0.70954356846473	6.5	2-11,1769-1760;13-20,1759-1752	1-1,1770-1770[UP5];12-12,x-x[BULq];21-21,1751-1751[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	ACAACUGAA-CUUUGAUAGUG&AAUUAUUAAAGAUUUAGUUGC	1	0.0233764401929352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN41317_c0_g1_1761_TPlot.pdf
TRINITY_DN41326_c0_g1:783	si_a68	TRINITY_DN41326_c0_g1	773	792	783	-25.40	-18.30	0.720472440944882	5.5	1-10,792-783;12-13,782-781;15-20,779-774	11-11,x-x[BULq];14-14,780-780[SIL];21-21,773-773[UP3]	.((((((.((-((((((((((&)))))))))).)).)))))).	AGAAAGAGAA-UUGAGAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN41326_c0_g1_783_TPlot.pdf
TRINITY_DN41326_c0_g1:789	si_s76	TRINITY_DN41326_c0_g1	778	798	789	-23.60	-17.00	0.720338983050847	6.5	2-14,797-785;17-21,782-778	1-1,798-798[UP5];15-16,784-783[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	GAGAAUUGAGAGAAGAGAAAC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN41326_c0_g1_789_TPlot.pdf
TRINITY_DN41326_c0_g1:793	si_a228	TRINITY_DN41326_c0_g1	780	802	793	-27.10	-17.64	0.650922509225092	12	2-10,801-793;15-21,786-780	1-1,802-802[UP5];11-14,792-787[AILt]	(((((((......(((((((((.&.)))))))))--....)))))))	GAAUUGAGAGAAGAGAAACGUGU&UCAUGUUUCU--AUAAUCAAUUC	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN41326_c0_g1_793_TPlot.pdf
TRINITY_DN4132_c0_g1:333	si_a69	TRINITY_DN4132_c0_g1	322	342	333	-24.00	-16.50	0.6875	5.5	2-3,341-340;5-20,338-323	1-1,342-342[UP5];4-4,339-339[SIL];21-21,322-322[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	UUGAAAAAUGAUUUGAACGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN4132_c0_g1_333_TPlot.pdf
TRINITY_DN4132_c0_g1:584	si_s7	TRINITY_DN4132_c0_g1	573	594	584	-21.70	-14.70	0.67741935483871	5.5	1-5,594-590;6-11,588-583;13-21,581-573	x-x,589-589[BULt];12-12,582-582[SIL]	(((((((((.((((((.(((((&)))))-)))))).)))))))))	AUAUGGUAAAAAUGAGUUAAUA&UAUUA-CUUAUUAUUACUAUAU	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN4132_c0_g1_584_TPlot.pdf
TRINITY_DN4132_c0_g1:585	si_s6	TRINITY_DN4132_c0_g1	574	595	585	-21.70	-14.50	0.668202764976959	4.5	1-6,595-590;7-12,588-583;14-21,581-574	x-x,589-589[BULt];13-13,582-582[SIL]	((((((((.((((((.((((((&))))))-)))))).))))))))	UAUGGUAAAAAUGAGUUAAUAU&AUAUUA-CUUAUUAUUACUAUA	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN4132_c0_g1_585_TPlot.pdf
TRINITY_DN4132_c0_g1:895	si_a557	TRINITY_DN4132_c0_g1	884	904	895	-33.40	-22.50	0.673652694610778	7.5	3-11,902-894;13-21,892-884	1-2,904-903[UP5];12-12,893-893[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GUUUAUGGGCAGAUGAAGAUA&UUUCUUUAUCUCCCCGUGAAU	2	0.966553182246443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN4132_c0_g1_895_TPlot.pdf
TRINITY_DN4132_c0_g1:898	si_a554	TRINITY_DN4132_c0_g1	887	907	898	-34.40	-22.60	0.656976744186047	5	1-4,907-904;6-14,902-894;16-21,892-887	5-5,903-903[SIL];15-15,893-893[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	UAUGGGCAGAUGAAGAUAUAG&CUAUUUCUUUAUCUCCCCGUG	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN4132_c0_g1_898_TPlot.pdf
TRINITY_DN4132_c0_g1:899	si_a553	TRINITY_DN4132_c0_g1	888	908	899	-33.70	-23.10	0.685459940652819	4.5	1-5,908-904;7-15,902-894;17-21,892-888	6-6,903-903[SIL];16-16,893-893[SIL]	(((((.(((((((((.(((((&))))).))))))))).)))))	AUGGGCAGAUGAAGAUAUAGA&UCUAUUUCUUUAUCUCCCCGU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN4132_c0_g1_899_TPlot.pdf
TRINITY_DN4132_c0_g1:902	si_a550	TRINITY_DN4132_c0_g1	890	911	902	-30.90	-20.90	0.676375404530744	8.5	4-8,908-904;10-18,902-894;19-21,892-890	1-3,911-909[UP5];9-9,903-903[SIL];x-x,893-893[BULt]	(((.(((((((((.(((((...&...))))).)))))))))-)))	GGGCAGAUGAAGAUAUAGAAGA&CAAUCUAUUUCUUUAUCU-CCC	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN4132_c0_g1_902_TPlot.pdf
TRINITY_DN4133_c1_g1:1247	si_a420	TRINITY_DN4133_c1_g1	1236	1256	1247	-25.00	-17.00	0.68	14	7-10,1250-1247;12-21,1245-1236	1-6,1256-1251[UP5];11-11,1246-1246[SIL]	((((((((((.((((......&......)))).))))))))))	GGAUCCUAUAGUUGUGUAGGA&AUUUAAAUAAAUAUAGGAUCC	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN4133_c1_g1_1247_TPlot.pdf
TRINITY_DN4133_c1_g1:1357	si_a783	TRINITY_DN4133_c1_g1	1345	1366	1357	-24.70	-16.22	0.65668016194332	10.5	2-10,1365-1357;14-20,1352-1346	1-1,1366-1366[UP5];11-13,1356-1353[AILt];21-21,1345-1345[UP3]	.(((((((....(((((((((.&.)))))))))-...))))))).	UAAUAGGAUCCCUAGAGGAGUG&AACUCUUCUA-UUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4133_c1_g1_1357_TPlot.pdf
TRINITY_DN4134_c0_g1:1797	si_a113	TRINITY_DN4134_c0_g1	1786	1807	1797	-26.20	-21.10	0.805343511450382	8.5	4-6,1804-1802;7-21,1800-1786	1-3,1807-1805[UP5];x-x,1801-1801[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	UGUGGAACAAGCUCGAUAUAGG&AAAAUA-CGAGCUUGUUUUAUA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN4134_c0_g1_1797_TPlot.pdf
TRINITY_DN4134_c0_g1:333	si_s22	TRINITY_DN4134_c0_g1	321	343	333	-26.70	-17.70	0.662921348314607	9	1-9,343-335;10-12,333-331;13-18,329-324	x-x,334-334[BULt];x-x,330-330[BULt];19-21,323-321[UP3]	...((((((.(((.(((((((((&)))))))))-)))-))))))...	AGCUAGUUGUCGAUUCAAUAUGG&CUAUAUUGA-UUG-CAACUAAAU	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN4134_c0_g1_333_TPlot.pdf
TRINITY_DN41354_c0_g1:57	si_s194	TRINITY_DN41354_c0_g1	45	66	57	-30.30	-20.50	0.676567656765677	8	1-12,66-55;17-20,49-46	13-16,54-50[AILt];21-21,45-45[UP3]	.((((.....((((((((((((&))))))))))))-....)))).	CGGUAAGGUGCCAAAGUAAUCG&CGAUUAUUUUGG-AAUGUACCA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN41354_c0_g1_57_TPlot.pdf
TRINITY_DN4135_c0_g1:2667	si_a10	TRINITY_DN4135_c0_g1	2656	2676	2667	-29.50	-20.30	0.688135593220339	10.5	4-16,2673-2661	1-3,2676-2674[UP5];17-21,2660-2656[UP3]	.....(((((((((((((...&...))))))))))))).....	AGGAUAUGGGCUUUCUCUGAA&UGAAGAGAAAGCCUAUUUAUU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN4135_c0_g1_2667_TPlot.pdf
TRINITY_DN4135_c0_g1:2672	si_a5	TRINITY_DN4135_c0_g1	2661	2681	2672	-31.10	-20.30	0.652733118971061	15.5	9-21,2673-2661	1-8,2681-2674[UP5]	(((((((((((((........&........)))))))))))))	AUGGGCUUUCUCUGAAUGUUA&GAAAUUGAAGAGAAAGCCUAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN4135_c0_g1_2672_TPlot.pdf
TRINITY_DN41373_c0_g1:16	si_a635	TRINITY_DN41373_c0_g1	5	27	16	-26.10	-17.28	0.662068965517241	13.5	3-8,25-20;11-20,15-6	1-2,27-26[UP5];9-10,19-16[AILt];21-21,5-5[UP3]	.((((((((((....((((((..&..))))))--..)))))))))).	UUUACUCAGAGCUCUAUCGACUC&AUGUCGAU--UUUUUUGAGUAAU	4	0.999999999991863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN41373_c0_g1_16_TPlot.pdf
TRINITY_DN4137_c0_g1:707	si_a408	TRINITY_DN4137_c0_g1	696	716	707	-20.10	-13.60	0.676616915422885	8	2-15,715-702	1-1,716-716[UP5];16-21,701-696[UP3]	......((((((((((((((.&.))))))))))))))......	UUUCCCAAUAUAGACAAAACC&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999790959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4137_c0_g1_707_TPlot.pdf
TRINITY_DN4139_c0_g1:879	si_s64	TRINITY_DN4139_c0_g1	868	888	879	-24.10	-16.40	0.680497925311203	6.5	1-10,888-879;13-21,876-868	11-12,878-877[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AAAGGAAAUCAAAGUUGCUGG&UUAGCAACUUCUAUUUUUUUU	3	0.999999983432403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN4139_c0_g1_879_TPlot.pdf
TRINITY_DN4139_c0_g1:880	si_s63	TRINITY_DN4139_c0_g1	869	889	880	-25.80	-19.00	0.736434108527132	6	1-11,889-879;14-21,876-869	12-13,878-877[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AAGGAAAUCAAAGUUGCUGGC&GUUAGCAACUUCUAUUUUUUU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN4139_c0_g1_880_TPlot.pdf
TRINITY_DN4139_c0_g1:881	si_s62	TRINITY_DN4139_c0_g1	870	890	881	-26.50	-19.50	0.735849056603774	5	1-12,890-879;15-21,876-870	13-14,878-877[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AGGAAAUCAAAGUUGCUGGCU&AGUUAGCAACUUCUAUUUUUU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN4139_c0_g1_881_TPlot.pdf
TRINITY_DN4139_c0_g1:882	si_s61	TRINITY_DN4139_c0_g1	871	891	882	-26.50	-18.90	0.713207547169811	6	2-13,890-879;16-21,876-871	1-1,891-891[UP5];14-15,878-877[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GGAAAUCAAAGUUGCUGGCUA&AAGUUAGCAACUUCUAUUUUU	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN4139_c0_g1_882_TPlot.pdf
TRINITY_DN4139_c0_g1:883	si_s60	TRINITY_DN4139_c0_g1	872	892	883	-28.20	-18.60	0.659574468085106	7.5	3-14,890-879;17-21,876-872	1-2,892-891[UP5];15-16,878-877[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	GAAAUCAAAGUUGCUGGCUAC&CAAGUUAGCAACUUCUAUUUU	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN4139_c0_g1_883_TPlot.pdf
TRINITY_DN4141_c0_g1:2060	si_s41	TRINITY_DN4141_c0_g1	2049	2069	2060	-25.00	-16.58	0.6632	8.5	2-8,2068-2062;12-20,2058-2050	1-1,2069-2069[UP5];9-11,2061-2059[SIL];21-21,2049-2049[UP3]	.(((((((((...(((((((.&.)))))))...))))))))).	AGGAAUCCAAAAUUUAAAGAA&AUCUUUAAUAAUUGGAUUUCA	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN4141_c0_g1_2060_TPlot.pdf
TRINITY_DN4141_c0_g1:2300	si_s883	TRINITY_DN4141_c0_g1	2289	2309	2300	-24.30	-16.80	0.691358024691358	6	2-5,2308-2305;7-19,2303-2291	1-1,2309-2309[UP5];6-6,2304-2304[SIL];20-21,2290-2289[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UUGGUCUAUUUAUUUAUAGUG&AACUAAAAAUAAAUAGGCUUU	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN4141_c0_g1_2300_TPlot.pdf
TRINITY_DN4141_c0_g1:2301	si_s882	TRINITY_DN4141_c0_g1	2290	2311	2301	-26.30	-17.10	0.650190114068441	6	1-2,2311-2310;3-6,2308-2305;8-20,2303-2291	x-x,2309-2309[BULt];7-7,2304-2304[SIL];21-21,2290-2290[UP3]	.(((((((((((((.((((.((&))-)))).))))))))))))).	UGGUCUAUUUAUUUAUAGUGUC&GA-ACUAAAAAUAAAUAGGCUU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN4141_c0_g1_2301_TPlot.pdf
TRINITY_DN4141_c0_g1:2338	si_a784	TRINITY_DN4141_c0_g1	2327	2347	2338	-24.70	-16.10	0.651821862348178	9.5	1-14,2347-2334	15-21,2333-2327[UP3]	.......((((((((((((((&)))))))))))))).......	UUUGUUAAGAAAUGGAGGAGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4141_c0_g1_2338_TPlot.pdf
TRINITY_DN41430_c0_g1:410	si_a888	TRINITY_DN41430_c0_g1	400	419	410	-22.80	-14.90	0.653508771929825	4	1-13,419-407;15-21,406-400	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	UUUAUUG-UAUUAUGUUGAUU&AAUCAAUAUAGUAAUAAUAAG	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a888_TRINITY_DN41430_c0_g1_410_TPlot.pdf
TRINITY_DN4143_c0_g3:2301	si_a787	TRINITY_DN4143_c0_g3	2289	2310	2301	-26.30	-17.70	0.673003802281369	8	4-10,2307-2301;11-20,2299-2290	1-3,2310-2308[UP5];x-x,2300-2300[BULt];21-21,2289-2289[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	AGGAAAAUAGAUAAAAUAGUAA&CUUCUAUUUU-UCUAUUUUCCA	4	0.999999999999477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4143_c0_g3_2301_TPlot.pdf
TRINITY_DN4143_c0_g3:2405	si_a356	TRINITY_DN4143_c0_g3	2394	2413	2405	-26.90	-18.10	0.672862453531599	10	5-8,2409-2406;10-21,2405-2394	1-4,2413-2410[UP5];9-9,x-x[BULq]	((((((((((((-((((....&....)))).))))))))))))	AUCCGAUCAAAA-AGAGCAAA&UUAAUUCUAUUUUGAUCGGAU	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN4143_c0_g3_2405_TPlot.pdf
TRINITY_DN41461_c0_g1:64	si_a75	TRINITY_DN41461_c0_g1	53	73	64	-21.30	-15.10	0.708920187793427	10.5	5-19,69-55	1-4,73-70[UP5];20-21,54-53[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAAUAGUGAAAAGCAAAGCU&CAAAUUGUUUUUCAUUAUUAA	2	0.998510531359226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN41461_c0_g1_64_TPlot.pdf
TRINITY_DN41462_c0_g1:313	si_a817	TRINITY_DN41462_c0_g1	301	322	313	-30.90	-20.70	0.669902912621359	5.5	1-12,322-311;13-18,309-304	x-x,310-310[BULt];19-21,303-301[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AUAUUUCUUCUUCUUCUUCUUC&GAAGAAGAAGAA-AGGAAAGAA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN41462_c0_g1_313_TPlot.pdf
TRINITY_DN41462_c0_g1:314	si_a816	TRINITY_DN41462_c0_g1	302	323	314	-32.30	-21.10	0.653250773993808	4.5	2-13,322-311;14-19,309-304	1-1,323-323[UP5];x-x,310-310[BULt];20-21,303-302[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	UAUUUCUUCUUCUUCUUCUUCU&CGAAGAAGAAGAA-AGGAAAGA	0	0.131583432433202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN41462_c0_g1_314_TPlot.pdf
TRINITY_DN41462_c0_g1:316	si_a814	TRINITY_DN41462_c0_g1	304	325	316	-32.90	-21.60	0.656534954407295	3.5	1-2,325-324;4-15,322-311;16-21,309-304	3-3,323-323[SIL];x-x,310-310[BULt]	((((((.((((((((((((.((&)).))))))))))))-))))))	UUUCUUCUUCUUCUUCUUCUCU&AGCGAAGAAGAAGAA-AGGAAA	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN41462_c0_g1_316_TPlot.pdf
TRINITY_DN41462_c0_g1:318	si_a812	TRINITY_DN41462_c0_g1	306	327	318	-34.80	-24.60	0.706896551724138	3.5	1-4,327-324;6-17,322-311;18-21,309-306	5-5,323-323[SIL];x-x,310-310[BULt]	((((.((((((((((((.((((&)))).))))))))))))-))))	UCUUCUUCUUCUUCUUCUCUUC&GAAGCGAAGAAGAAGAA-AGGA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN41462_c0_g1_318_TPlot.pdf
TRINITY_DN4146_c0_g1:401	si_a415	TRINITY_DN4146_c0_g1	390	410	401	-18.10	-12.20	0.674033149171271	7.5	2-17,409-394	1-1,410-410[UP5];18-21,393-390[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUUGGUUUAUUUAAAUAUGGC&UUUAUAUUUAAAUAAAUAUAG	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN4146_c0_g1_401_TPlot.pdf
TRINITY_DN4146_c0_g1:402	si_a414	TRINITY_DN4146_c0_g1	391	411	402	-18.10	-12.20	0.674033149171271	8.5	3-18,409-394	1-2,411-410[UP5];19-21,393-391[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUGGUUUAUUUAAAUAUGGCU&GUUUAUAUUUAAAUAAAUAUA	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN4146_c0_g1_402_TPlot.pdf
TRINITY_DN4146_c0_g1:403	si_a413	TRINITY_DN4146_c0_g1	392	414	403	-18.40	-12.80	0.695652173913044	8.5	1-3,414-412;4-19,409-394	x-x,411-410[BULt];20-21,393-392[UP3]	..((((((((((((((((..(((&)))--))))))))))))))))..	UGGUUUAUUUAAAUAUGGCUACA&UGU--UUAUAUUUAAAUAAAUAU	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN4146_c0_g1_403_TPlot.pdf
TRINITY_DN4146_c0_g1:404	si_a412	TRINITY_DN4146_c0_g1	393	415	404	-18.30	-13.70	0.748633879781421	7.5	1-4,415-412;5-20,409-394	x-x,411-410[BULt];21-21,393-393[UP3]	.((((((((((((((((..((((&))))--)))))))))))))))).	GGUUUAUUUAAAUAUGGCUACAA&UUGU--UUAUAUUUAAAUAAAUA	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN4146_c0_g1_404_TPlot.pdf
TRINITY_DN4147_c0_g1:2609	si_s79	TRINITY_DN4147_c0_g1	2598	2619	2609	-26.20	-17.30	0.66030534351145	7	1-9,2619-2611;10-11,2609-2608;13-21,2606-2598	x-x,2610-2610[BULt];12-12,2607-2607[SIL]	(((((((((.((.(((((((((&)))))))))-)).)))))))))	GAGAAGAGACGAUAAGAAGGAA&UUUUUUCUU-UCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4147_c0_g1_2609_TPlot.pdf
TRINITY_DN4148_c1_g1:1794	si_a127	TRINITY_DN4148_c1_g1	1783	1803	1794	-23.10	-15.10	0.653679653679654	10	2-15,1802-1789	1-1,1803-1803[UP5];16-21,1788-1783[UP3]	......((((((((((((((.&.))))))))))))))......	GCCCCGACUGUUGUUGUAAAU&UUUUAUAGCAAUAGUAAUUAA	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN4148_c1_g1_1794_TPlot.pdf
TRINITY_DN4148_c1_g1:2179	si_a349	TRINITY_DN4148_c1_g1	2168	2189	2179	-21.30	-14.00	0.657276995305164	8	1-6,2189-2184;8-16,2181-2173;18-21,2171-2168	7-7,2183-2182[AILt];17-17,2172-2172[SIL]	((((.(((((((((..((((((&))))))-.))))))))).))))	CAAGCUGGAGUUAAAGGUUUUC&GAAAAU-AUUAAUUCUAUUUUG	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN4148_c1_g1_2179_TPlot.pdf
TRINITY_DN414_c0_g1:1367	si_a807	TRINITY_DN414_c0_g1	1356	1378	1367	-34.80	-23.10	0.663793103448276	8.5	2-9,1377-1370;11-21,1366-1356	1-1,1378-1378[UP5];10-10,1369-1367[AILt]	(((((((((((...((((((((.&.))))))))--.)))))))))))	UUUUCUUCUUCACUCUUCGGGUC&AAUCCGAAG--CGAAGAAGAAGA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a807_TRINITY_DN414_c0_g1_1367_TPlot.pdf
TRINITY_DN414_c1_g1:846	si_a410	TRINITY_DN414_c1_g1	835	855	846	-17.80	-11.60	0.651685393258427	9.5	1-6,855-850;9-19,847-837	7-8,849-848[SIL];20-21,836-835[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	AAUAUUUGGAUAUUCGCGAAG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999980888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN414_c1_g1_846_TPlot.pdf
TRINITY_DN414_c1_g2:2005	si_s487	TRINITY_DN414_c1_g2	1993	2014	2005	-18.40	-13.10	0.71195652173913	5.5	1-12,2014-2003;14-20,2000-1994	13-13,2002-2001[AILt];21-21,1993-1993[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	AGUUUGUACAUUAAAUAAAUGU&AUAUUUAUUUAA-AUAUAAACA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN414_c1_g2_2005_TPlot.pdf
TRINITY_DN414_c1_g2:2006	si_s486	TRINITY_DN414_c1_g2	1994	2015	2006	-18.10	-12.60	0.696132596685083	4.5	2-13,2014-2003;15-21,2000-1994	1-1,2015-2015[UP5];14-14,2002-2001[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	GUUUGUACAUUAAAUAAAUGUU&UAUAUUUAUUUAA-AUAUAAAC	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN414_c1_g2_2006_TPlot.pdf
TRINITY_DN4152_c0_g1:669	si_a875	TRINITY_DN4152_c0_g1	658	677	669	-27.10	-20.10	0.74169741697417	6.5	2-6,676-672;8-19,671-660	1-1,677-677[UP5];7-7,x-x[BULq];20-21,659-658[UP3]	..((((((((((((-(((((.&.))))).))))))))))))..	GCUUGGUUGCAACU-GAUCUC&AAGAUUUAGUUGCAAUCAAUA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN4152_c0_g1_669_TPlot.pdf
TRINITY_DN4152_c0_g1:916	si_a876	TRINITY_DN4152_c0_g1	904	925	916	-27.30	-18.30	0.67032967032967	7.5	2-6,924-920;8-16,918-910;17-21,908-904	1-1,925-925[UP5];7-7,919-919[SIL];x-x,909-909[BULt]	(((((.(((((((((.(((((.&.))))).)))))))))-)))))	AUAUUAGGUUGCAGCCGGAUCC&AGAUUUAGUUGCAAUC-AAUAU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN4152_c0_g1_916_TPlot.pdf
TRINITY_DN4152_c0_g1:950	si_a418	TRINITY_DN4152_c0_g1	940	959	950	-21.20	-14.00	0.660377358490566	7	4-14,956-946;16-21,945-940	1-3,959-957[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GUCCUA-GUUUAUUUAAAGGU&AUAUUUAAAUAAAUAUAGGAU	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN4152_c0_g1_950_TPlot.pdf
TRINITY_DN4153_c0_g1:4096	si_s79	TRINITY_DN4153_c0_g1	4085	4105	4096	-26.20	-20.60	0.786259541984733	12.5	6-19,4100-4087	1-5,4105-4101[UP5];20-21,4086-4085[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUGAAGGAAGGAGAGACCAUU&UUUUUUCUUUCCUUUCUUCUU	3	0.99999919223585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4153_c0_g1_4096_TPlot.pdf
TRINITY_DN4153_c0_g1:7581	si_s808	TRINITY_DN4153_c0_g1	7570	7590	7581	-28.60	-18.60	0.65034965034965	10.5	4-13,7587-7578;15-19,7576-7572	1-3,7590-7588[UP5];14-14,7577-7577[SIL];20-21,7571-7570[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	ACGAGAGCGGGUAACGAGAGU&AUCUUCGUUACCUUUUCUUAA	4	0.999999999999968	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN4153_c0_g1_7581_TPlot.pdf
TRINITY_DN41548_c0_g1:110	si_a440	TRINITY_DN41548_c0_g1	100	119	110	-30.80	-21.60	0.701298701298701	4.5	2-16,118-104;19-21,102-100	1-1,119-119[UP5];17-18,103-103[AILq]	(((.-(((((((((((((((.&.)))))))))))))))..)))	GCAC-UGUUUCAUAUCCAACU&CGUUGGAUAUGAGAUAAUUGU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN41548_c0_g1_110_TPlot.pdf
TRINITY_DN4154_c0_g1:100	si_s524	TRINITY_DN4154_c0_g1	89	115	100	-23.90	-16.20	0.677824267782427	14	1-7,115-109;8-21,102-89	x-x,108-103[BULt]	((((((((((((((......(((((((&)))))))------))))))))))))))	UUAAAGAUGAUUUCCAUCCAGAAUUGA&UUAAUUC------GAAAUCAUUUUUGA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN4154_c0_g1_100_TPlot.pdf
TRINITY_DN4154_c0_g1:3104	si_s67	TRINITY_DN4154_c0_g1	3093	3113	3104	-25.60	-18.20	0.7109375	7.5	1-11,3113-3103;13-17,3101-3097;19-20,3095-3094	12-12,3102-3102[SIL];18-18,3096-3096[SIL];21-21,3093-3093[UP3]	.((.(((((.(((((((((((&))))))))))).))))).)).	CGGCGAAAGCGUGGAAGUUGC&GCAACUUCUAUUUUUUUUCUU	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4154_c0_g1_3104_TPlot.pdf
TRINITY_DN4154_c0_g1:3114	si_s57	TRINITY_DN4154_c0_g1	3103	3120	3114	-29.30	-19.20	0.655290102389078	8	1-6,3120-3115;10-21,3114-3103	7-9,x-x[BULq]	((((((((((((---((((((&))))))...))))))))))))	GUGGAAGUUGCU---UUGGAA&UUUCAAGUUAGCAACUUCUAU	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN4154_c0_g1_3114_TPlot.pdf
TRINITY_DN4154_c0_g1:3430	si_a69	TRINITY_DN4154_c0_g1	3419	3441	3430	-24.00	-16.20	0.675	9.5	2-7,3440-3435;9-20,3431-3420	1-1,3441-3441[UP5];8-8,3434-3432[AILt];21-21,3419-3419[UP3]	.((((((((((((...((((((.&.))))))--.)))))))))))).	CUGAGAAACAAUUAGCGGAAGAU&UUCUUUC--AAAUUGUUUUUCAU	3	0.999999999064973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN4154_c0_g1_3430_TPlot.pdf
TRINITY_DN41551_c0_g1:188	si_s347	TRINITY_DN41551_c0_g1	176	197	188	-33.70	-25.50	0.756676557863501	3.5	1-17,197-181;18-21,179-176	x-x,180-180[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	UCUGCUUUCUUUAUUUUCCCGU&ACGGGGAGAUAAAGAAA-UAGA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s347_TRINITY_DN41551_c0_g1_188_TPlot.pdf
TRINITY_DN4155_c0_g1:1522	si_s628	TRINITY_DN4155_c0_g1	1513	1531	1522	-35.40	-26.50	0.748587570621469	5.5	1-12,1531-1520;15-21,1519-1513	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGGCGCU--CGAGAAGGUCGC&GCGAUCUUUUCGUAGGCGUUU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN4155_c0_g1_1522_TPlot.pdf
TRINITY_DN4155_c0_g1:1528	si_s622	TRINITY_DN4155_c0_g1	1518	1535	1528	-34.20	-22.80	0.666666666666667	6.5	1-4,1535-1532;7-18,1531-1520;20-21,1519-1518	5-6,x-x[BULq];19-19,x-x[BULq]	((-((((((((((((--((((&))))..)))))))))))).))	CU-CGAGAAGGUCGC--GGAU&AUCCAAGCGAUCUUUUCGUAG	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN4155_c0_g1_1528_TPlot.pdf
TRINITY_DN4155_c0_g1:1530	si_s620	TRINITY_DN4155_c0_g1	1519	1537	1530	-32.10	-22.00	0.685358255451713	9	3-6,1535-1532;9-20,1531-1520	1-2,1537-1536[UP5];7-8,x-x[BULq];21-21,1519-1519[UP3]	.((((((((((((--((((..&..))))..)))))))))))).	UCGAGAAGGUCGC--GGAUGA&AAAUCCAAGCGAUCUUUUCGU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN4155_c0_g1_1530_TPlot.pdf
TRINITY_DN4155_c0_g1:1532	si_s618	TRINITY_DN4155_c0_g1	1521	1539	1532	-30.30	-20.00	0.66006600660066	12	5-8,1535-1532;11-21,1531-1521	1-4,1539-1536[UP5];9-10,x-x[BULq]	(((((((((((--((((....&....))))..)))))))))))	GAGAAGGUCGC--GGAUGAGA&UUAAAUCCAAGCGAUCUUUUC	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN4155_c0_g1_1532_TPlot.pdf
TRINITY_DN4155_c0_g1:2906	si_a406	TRINITY_DN4155_c0_g1	2894	2915	2906	-19.80	-14.80	0.747474747474748	8	1-14,2915-2902;15-19,2900-2896	x-x,2901-2901[BULt];20-21,2895-2894[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AGUGGAUGAUGAACAAGGCGAU&AUUGUUUUGUUUAU-AUUUAAA	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4155_c0_g1_2906_TPlot.pdf
TRINITY_DN41582_c0_g1:258	si_s79	TRINITY_DN41582_c0_g1	243	267	258	-26.20	-17.40	0.66412213740458	9	1-10,267-258;11-11,256-256;12-21,252-243	x-x,257-257[BULt];x-x,255-253[BULt]	((((((((((...(.((((((((((&))))))))))-)---))))))))))	AAGAAGAAAGACUGCAAAGAAGAAA&UUUUUUCUUU-C---CUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN41582_c0_g1_258_TPlot.pdf
TRINITY_DN41582_c0_g1:260	si_s77	TRINITY_DN41582_c0_g1	245	269	260	-25.50	-17.10	0.670588235294118	7	1-12,269-258;13-13,256-256;14-21,252-245	x-x,257-257[BULt];x-x,255-253[BULt]	((((((((...(.((((((((((((&))))))))))))-)---))))))))	GAAGAAAGACUGCAAAGAAGAAAGA&UUUUUUUUCUUU-C---CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN41582_c0_g1_260_TPlot.pdf
TRINITY_DN415_c0_g1:1350	si_a232	TRINITY_DN415_c0_g1	1342	1359	1350	-28.20	-18.90	0.670212765957447	6.5	1-11,1359-1349;15-21,1348-1342	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	GAUCGGA---AUUAUGGAAGC&GUUUCUAUAAUCAAUUCGAUC	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN415_c0_g1_1350_TPlot.pdf
TRINITY_DN415_c0_g1:1836	si_s490	TRINITY_DN415_c0_g1	1823	1845	1836	-17.80	-11.60	0.651685393258427	9	1-12,1845-1834;13-18,1831-1826	x-x,1833-1832[BULt];19-21,1825-1823[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	AAAUGUUUAAAUAUUUAGAUGAA&UUUAUUUAAAUA--UAAACAAAA	3	0.999984791192561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN415_c0_g1_1836_TPlot.pdf
TRINITY_DN415_c0_g1:1837	si_s489	TRINITY_DN415_c0_g1	1824	1846	1837	-17.90	-12.90	0.720670391061453	6	1-13,1846-1834;14-19,1831-1826	x-x,1833-1832[BULt];20-21,1825-1824[UP3]	..((((((..(((((((((((((&)))))))))))))--))))))..	AAUGUUUAAAUAUUUAGAUGAAU&AUUUAUUUAAAUA--UAAACAAA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN415_c0_g1_1837_TPlot.pdf
TRINITY_DN415_c0_g1:1841	si_s485	TRINITY_DN415_c0_g1	1830	1850	1841	-18.10	-11.90	0.657458563535912	10	4-18,1847-1833	1-3,1850-1848[UP5];19-21,1832-1830[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAAAUAUUUAGAUGAAUAAAU&CUAUAUUUAUUUAAAUAUAAA	3	0.999997108203053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN415_c0_g1_1841_TPlot.pdf
TRINITY_DN4160_c0_g1:969	si_s273	TRINITY_DN4160_c0_g1	955	978	969	-29.50	-19.20	0.650847457627119	14.5	7-19,972-960;20-21,956-955	1-6,978-973[UP5];x-x,959-957[BULt]	((...(((((((((((((......&......)))))))))))))---))	GGACCCGUAUUGUGUCGAGACGAG&AAAAAAUCGACAUAAUACG---CC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s273_TRINITY_DN4160_c0_g1_969_TPlot.pdf
TRINITY_DN4160_c0_g1:970	si_s272	TRINITY_DN4160_c0_g1	959	979	970	-27.10	-18.70	0.690036900369004	14.5	8-20,972-960	1-7,979-973[UP5];21-21,959-959[UP3]	.(((((((((((((.......&.......))))))))))))).	CCGUAUUGUGUCGAGACGAGA&AAAAAAAUCGACAUAAUACGC	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s272_TRINITY_DN4160_c0_g1_970_TPlot.pdf
TRINITY_DN4160_c0_g1:979	si_a784	TRINITY_DN4160_c0_g1	967	988	979	-24.70	-17.60	0.712550607287449	8.5	1-13,988-976;14-16,974-972	x-x,975-975[BULt];17-21,971-967[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	UGUCGAGACGAGAUGGAAGAGU&ACUCUUCUAUUUU-UCUAUUUU	3	0.999999855462075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4160_c0_g1_979_TPlot.pdf
TRINITY_DN4160_c0_g1:983	si_a780	TRINITY_DN4160_c0_g1	971	992	983	-27.30	-19.20	0.703296703296703	6.5	1-3,992-990;5-17,988-976;18-20,974-972	4-4,989-989[SIL];x-x,975-975[BULt];21-21,971-971[UP3]	.(((.(((((((((((((.(((&))).)))))))))))))-))).	GAGACGAGAUGGAAGAGUGGAG&UUCAACUCUUCUAUUUU-UCUA	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN4160_c0_g1_983_TPlot.pdf
TRINITY_DN4160_c0_g1:984	si_a779	TRINITY_DN4160_c0_g1	972	993	984	-27.00	-18.80	0.696296296296296	6.5	2-4,992-990;6-18,988-976;19-21,974-972	1-1,993-993[UP5];5-5,989-989[SIL];x-x,975-975[BULt]	(((.(((((((((((((.(((.&.))).)))))))))))))-)))	AGACGAGAUGGAAGAGUGGAGC&AUUCAACUCUUCUAUUUU-UCU	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN4160_c0_g1_984_TPlot.pdf
TRINITY_DN4162_c0_g1:1611	si_s17	TRINITY_DN4162_c0_g1	1600	1623	1611	-27.20	-18.00	0.661764705882353	9.5	1-7,1623-1617;8-18,1613-1603;20-21,1601-1600	x-x,1616-1614[BULt];19-19,1602-1602[SIL]	((.(((((((((((...(((((((&)))))))---))))))))))).))	GUAGCGAUCGGUAUAACAGUAAUA&UAUUACU---AUAUUGAUUGCAAC	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN4162_c0_g1_1611_TPlot.pdf
TRINITY_DN4162_c0_g1:1612	si_s16	TRINITY_DN4162_c0_g1	1601	1624	1612	-25.60	-17.70	0.69140625	11	2-8,1623-1617;9-19,1613-1603	1-1,1624-1624[UP5];x-x,1616-1614[BULt];20-21,1602-1601[UP3]	..(((((((((((...(((((((.&.)))))))---)))))))))))..	UAGCGAUCGGUAUAACAGUAAUAU&UUAUUACU---AUAUUGAUUGCAA	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN4162_c0_g1_1612_TPlot.pdf
TRINITY_DN41634_c0_g1:383	si_s79	TRINITY_DN41634_c0_g1	372	392	383	-26.20	-17.40	0.66412213740458	10	3-16,390-377	1-2,392-391[UP5];17-21,376-372[UP3]	.....((((((((((((((..&..)))))))))))))).....	GACGCGGAGGGAAAGAAAGCU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN41634_c0_g1_383_TPlot.pdf
TRINITY_DN41634_c0_g1:548	si_a19	TRINITY_DN41634_c0_g1	539	556	548	-27.00	-17.94	0.664444444444445	10	1-9,556-548;14-21,546-539	10-13,547-547[AILq]	((((((((.---(((((((((&)))))))))....))))))))	AGAGCUGAC---AAGUGGGCU&AGCCUAUUUAUUUUUAGUUCU	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN41634_c0_g1_548_TPlot.pdf
TRINITY_DN4163_c0_g1:2052	si_a406	TRINITY_DN4163_c0_g1	2041	2061	2052	-19.80	-13.40	0.676767676767677	8.5	2-14,2060-2048	1-1,2061-2061[UP5];15-21,2047-2041[UP3]	.......(((((((((((((.&.))))))))))))).......	GUAAACAGUAAACAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4163_c0_g1_2052_TPlot.pdf
TRINITY_DN41649_c0_g1:220	si_s87	TRINITY_DN41649_c0_g1	205	229	220	-32.90	-21.70	0.659574468085106	13	3-11,227-219;12-20,214-206	1-2,229-228[UP5];x-x,218-215[BULt];21-21,205-205[UP3]	.(((((((((....(((((((((..&..)))))))))----))))))))).	UAGUGAGGAAAAUUGAAGAAAGGCA&UUCCUUUCUUC----UUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN41649_c0_g1_220_TPlot.pdf
TRINITY_DN4164_c0_g1:33	si_s83	TRINITY_DN4164_c0_g1	22	42	33	-30.90	-26.80	0.867313915857605	5	1-4,42-39;6-21,37-22	5-5,38-38[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	GAAGGAGGAGAAGGGGUAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4164_c0_g1_33_TPlot.pdf
TRINITY_DN4164_c0_g1:3302	si_a28	TRINITY_DN4164_c0_g1	3291	3311	3302	-30.70	-21.90	0.713355048859935	8	1-6,3311-3306;8-12,3304-3300;15-21,3297-3291	7-7,3305-3305[SIL];13-14,3299-3298[SIL]	(((((((..(((((.((((((&)))))).)))))..)))))))	ACCGGUCGAGGAGCCAAAGGU&AUUUUUAGUUCUAAGACCGGU	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN4164_c0_g1_3302_TPlot.pdf
TRINITY_DN4164_c0_g1:3303	si_a27	TRINITY_DN4164_c0_g1	3292	3312	3303	-30.30	-20.60	0.67986798679868	8.5	2-7,3311-3306;9-13,3304-3300;16-21,3297-3292	1-1,3312-3312[UP5];8-8,3305-3305[SIL];14-15,3299-3298[SIL]	((((((..(((((.((((((.&.)))))).)))))..))))))	CCGGUCGAGGAGCCAAAGGUC&UAUUUUUAGUUCUAAGACCGG	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN4164_c0_g1_3303_TPlot.pdf
TRINITY_DN4164_c0_g1:64	si_a785	TRINITY_DN4164_c0_g1	54	73	64	-25.90	-17.00	0.656370656370656	8.5	1-9,73-65;11-14,63-60;16-21,59-54	10-10,64-64[SIL];15-15,x-x[BULq]	((((((-((((.(((((((((&))))))))).)))).))))))	GAGGGU-GAAACGUGGGAGGG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4164_c0_g1_64_TPlot.pdf
TRINITY_DN4165_c0_g1:1957	si_s78	TRINITY_DN4165_c0_g1	1945	1966	1957	-26.20	-17.40	0.66412213740458	7	1-13,1966-1954;15-18,1952-1949;19-21,1947-1945	14-14,1953-1953[SIL];x-x,1948-1948[BULt]	(((.((((.(((((((((((((&))))))))))))).))))-)))	AGACAGGGUGGGAAGAGGAAGA&UUUUUUUCUUUCCUUUCU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4165_c0_g1_1957_TPlot.pdf
TRINITY_DN4166_c0_g1:2173	si_s887	TRINITY_DN4166_c0_g1	2159	2182	2173	-26.80	-17.42	0.65	14.5	5-14,2178-2169;17-21,2163-2159	1-4,2182-2179[UP5];15-16,2168-2164[AILt]	(((((.....((((((((((....&....))))))))))---..)))))	GGAGAUGCUUGCCUGUUUGUAACU&AAAAAUAAAUAGGC---UUUCUCU	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4166_c0_g1_2173_TPlot.pdf
TRINITY_DN4166_c0_g1:3050	si_a408	TRINITY_DN4166_c0_g1	3039	3059	3050	-20.10	-13.70	0.681592039800995	9	1-14,3059-3046	15-21,3045-3039[UP3]	.......((((((((((((((&)))))))))))))).......	GACUUCUAUAUAAACAAGGCA&UGUUUUGUUUAUAUUUAAAUA	2	0.999990601104866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4166_c0_g1_3050_TPlot.pdf
TRINITY_DN4166_c0_g1:3068	si_a286	TRINITY_DN4166_c0_g1	3057	3077	3068	-28.30	-20.20	0.713780918727915	11	2-13,3076-3065	1-1,3077-3077[UP5];14-21,3064-3057[UP3]	........((((((((((((.&.))))))))))))........	GCAAAUACAUCCAGGCGGUCA&AGAUCGCUUGGAUUUAAAAAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN4166_c0_g1_3068_TPlot.pdf
TRINITY_DN4167_c0_g1:1022	si_a723	TRINITY_DN4167_c0_g1	1011	1032	1022	-35.10	-25.10	0.715099715099715	8.5	1-6,1032-1027;7-17,1025-1015	x-x,1026-1026[BULt];18-21,1014-1011[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	CAAUGAUGUCCGAGUGGACGGU&AUCGUU-ACUCGGGCAUCUUUA	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN4167_c0_g1_1022_TPlot.pdf
TRINITY_DN4167_c0_g1:1023	si_a722	TRINITY_DN4167_c0_g1	1012	1033	1023	-34.70	-25.30	0.729106628242075	8.5	2-7,1032-1027;8-18,1025-1015	1-1,1033-1033[UP5];x-x,1026-1026[BULt];19-21,1014-1012[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	AAUGAUGUCCGAGUGGACGGUC&AAUCGUU-ACUCGGGCAUCUUU	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN4167_c0_g1_1023_TPlot.pdf
TRINITY_DN4167_c0_g1:1024	si_a721	TRINITY_DN4167_c0_g1	1013	1034	1024	-35.10	-25.30	0.720797720797721	9.5	3-8,1032-1027;9-19,1025-1015	1-2,1034-1033[UP5];x-x,1026-1026[BULt];20-21,1014-1013[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	AUGAUGUCCGAGUGGACGGUCG&UAAUCGUU-ACUCGGGCAUCUU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN4167_c0_g1_1024_TPlot.pdf
TRINITY_DN4167_c0_g1:1028	si_a718	TRINITY_DN4167_c0_g1	1016	1037	1028	-32.60	-21.90	0.671779141104294	13.5	6-11,1032-1027;12-21,1025-1016	1-5,1037-1033[UP5];x-x,1026-1026[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	AUGUCCGAGUGGACGGUCGAGG&AAAUAAUCGUU-ACUCGGGCAU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN4167_c0_g1_1028_TPlot.pdf
TRINITY_DN4167_c0_g1:1043	si_s637	TRINITY_DN4167_c0_g1	1031	1052	1043	-40.90	-26.70	0.65281173594132	9.5	1-4,1052-1049;6-10,1047-1043;11-15,1040-1036;17-21,1035-1031	5-5,1048-1048[SIL];x-x,1042-1041[BULt];16-16,x-x[BULq]	(((((-(((((..(((((.((((&)))).)))))--))))).)))))	GUCGA-GGCAACGGCGCCCGCGA&UCGUAGGCGU--UUGCCCUCGAU	2	0.992763914805312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN4167_c0_g1_1043_TPlot.pdf
TRINITY_DN4167_c0_g1:880	si_s302	TRINITY_DN4167_c0_g1	870	888	880	-32.30	-21.10	0.653250773993808	8	1-4,888-885;6-11,884-879;15-21,876-870	5-5,x-x[BULq];12-14,878-877[AILq]	(((((((..-((((((-((((&)))).))))))...)))))))	GGCAGGAGC-UCGCGA-UCCA&UGGAAUUGCGAAAAUUCUGUC	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s302_TRINITY_DN4167_c0_g1_880_TPlot.pdf
TRINITY_DN4167_c0_g1:913	si_s175	TRINITY_DN4167_c0_g1	902	922	913	-38.10	-27.70	0.727034120734908	4.5	1-14,922-909;16-17,907-906;19-21,904-902	15-15,908-908[SIL];18-18,905-905[SIL]	(((.((.((((((((((((((&)))))))))))))).)).)))	UGUGGCCUGGGCAUCUUUGCC&GGUAAAGAUGCCCGAGUAACG	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s175_TRINITY_DN4167_c0_g1_913_TPlot.pdf
TRINITY_DN4167_c0_g1:914	si_s174	TRINITY_DN4167_c0_g1	903	923	914	-39.00	-28.10	0.720512820512821	4.5	1-15,923-909;17-18,907-906;20-21,904-903	16-16,908-908[SIL];19-19,905-905[SIL]	((.((.(((((((((((((((&))))))))))))))).)).))	GUGGCCUGGGCAUCUUUGCCU&GGGUAAAGAUGCCCGAGUAAC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN4167_c0_g1_914_TPlot.pdf
TRINITY_DN4167_c0_g1:917	si_s171	TRINITY_DN4167_c0_g1	906	926	917	-41.60	-30.10	0.723557692307692	7	3-18,924-909;20-21,907-906	1-2,926-925[UP5];19-19,908-908[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	GCCUGGGCAUCUUUGCCUCGA&CAGGGGUAAAGAUGCCCGAGU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s171_TRINITY_DN4167_c0_g1_917_TPlot.pdf
TRINITY_DN4167_c0_g1:918	si_s170	TRINITY_DN4167_c0_g1	907	927	918	-43.20	-29.10	0.673611111111111	9.5	4-19,924-909	1-3,927-925[UP5];20-21,908-907[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCUGGGCAUCUUUGCCUCGAC&CCAGGGGUAAAGAUGCCCGAG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s170_TRINITY_DN4167_c0_g1_918_TPlot.pdf
TRINITY_DN416_c0_g1:187	si_s42	TRINITY_DN416_c0_g1	176	196	187	-24.90	-16.50	0.662650602409639	6	2-5,195-192;7-20,190-177	1-1,196-196[UP5];6-6,191-191[SIL];21-21,176-176[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	CUGGAAUCUAAUUAUCAAGGU&UCUUUAAUAAUUGGAUUUCAA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN416_c0_g1_187_TPlot.pdf
TRINITY_DN416_c0_g1:188	si_s41	TRINITY_DN416_c0_g1	177	196	188	-25.00	-16.30	0.652	6	1-5,196-192;8-21,190-177	6-7,191-191[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	UGGAAUCUAAUUAUC-AAGGU&AUCUUUAAUAAUUGGAUUUCA	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN416_c0_g1_188_TPlot.pdf
TRINITY_DN416_c0_g1:456	si_a785	TRINITY_DN416_c0_g1	445	466	456	-25.90	-17.40	0.671814671814672	10.5	1-7,466-460;9-18,457-448	8-8,459-458[AILt];19-21,447-445[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AGUGAUAGAGAAAGGGGAAGGG&CUCUUCU-AUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN416_c0_g1_456_TPlot.pdf
TRINITY_DN416_c0_g1:462	si_s68	TRINITY_DN416_c0_g1	451	472	462	-23.10	-15.20	0.658008658008658	11.5	3-8,470-465;10-21,462-451	1-2,472-471[UP5];9-9,464-463[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	AGAGAAAGGGGAAGGGAAGUGA&CAACUUCU-AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN416_c0_g1_462_TPlot.pdf
TRINITY_DN416_c0_g1:528	si_s8	TRINITY_DN416_c0_g1	517	536	528	-21.30	-14.80	0.694835680751174	5.5	1-6,536-531;8-18,530-520	7-7,x-x[BULq];19-21,519-517[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	UAAAUGGUAAUAAU-AGUAAU&AUUACUUAUUAUUACUAUAUU	4	0.999835249032249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN416_c0_g1_528_TPlot.pdf
TRINITY_DN416_c0_g1:546	si_a128	TRINITY_DN416_c0_g1	534	555	546	-23.20	-16.20	0.698275862068966	8.5	1-15,555-541;16-19,539-536	x-x,540-540[BULt];20-21,535-534[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	AAUGGUGUGCUGUUGUUGUGAA&UUUAUAGCAAUAGUA-AUUAAU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN416_c0_g1_546_TPlot.pdf
TRINITY_DN416_c0_g1:547	si_a127	TRINITY_DN416_c0_g1	535	556	547	-23.10	-16.90	0.731601731601731	7.5	1-16,556-541;17-20,539-536	x-x,540-540[BULt];21-21,535-535[UP3]	.((((.((((((((((((((((&))))))))))))))))-)))).	AUGGUGUGCUGUUGUUGUGAAA&UUUUAUAGCAAUAGUA-AUUAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN416_c0_g1_547_TPlot.pdf
TRINITY_DN416_c0_g1:549	si_a125	TRINITY_DN416_c0_g1	538	558	549	-25.00	-18.20	0.728	9	2-18,557-541	1-1,558-558[UP5];19-21,540-538[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GUGUGCUGUUGUUGUGAAAUU&UGUUUUAUAGCAAUAGUAAUU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN416_c0_g1_549_TPlot.pdf
TRINITY_DN416_c0_g1:550	si_a124	TRINITY_DN416_c0_g1	539	559	550	-25.10	-18.20	0.725099601593625	10	3-19,557-541	1-2,559-558[UP5];20-21,540-539[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UGUGCUGUUGUUGUGAAAUUA&UUGUUUUAUAGCAAUAGUAAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN416_c0_g1_550_TPlot.pdf
TRINITY_DN416_c0_g1:551	si_a123	TRINITY_DN416_c0_g1	540	560	551	-26.60	-18.20	0.684210526315789	11	4-20,557-541	1-3,560-558[UP5];21-21,540-540[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GUGCUGUUGUUGUGAAAUUAU&CUUGUUUUAUAGCAAUAGUAA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN416_c0_g1_551_TPlot.pdf
TRINITY_DN4170_c0_g1:703	si_a556	TRINITY_DN4170_c0_g1	691	712	703	-33.40	-22.50	0.673652694610778	6.5	1-8,712-705;10-11,703-702;12-19,700-693	9-9,704-704[SIL];x-x,701-701[BULt];20-21,692-691[UP3]	..((((((((.((.((((((((&)))))))).))-))))))))..	GACAUGGGGAUGAAAAAGAAAU&AUUUCUUUAUC-UCCCCGUGAA	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN4170_c0_g1_703_TPlot.pdf
TRINITY_DN41716_c0_g1:207	si_s87	TRINITY_DN41716_c0_g1	189	216	207	-32.90	-22.40	0.680851063829787	10.5	2-14,215-203;15-21,195-189	1-1,216-216[UP5];x-x,202-196[BULt]	(((((((.......(((((((((((((.&.)))))))))))))-------)))))))	AAGUGGGAGAUGCUGAAGGAGAAAGGAG&UUCCUUUCUUCUUC-------UUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN41716_c0_g1_207_TPlot.pdf
TRINITY_DN41716_c0_g1:208	si_s86	TRINITY_DN41716_c0_g1	190	217	208	-32.90	-23.10	0.702127659574468	10.5	1-15,217-203;16-21,195-190	x-x,202-196[BULt]	((((((.......(((((((((((((((&)))))))))))))))-------))))))	AGUGGGAGAUGCUGAAGGAGAAAGGAGA&UUUCCUUUCUUCUUC-------UUCGCU	3	0.999999999795148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN41716_c0_g1_208_TPlot.pdf
TRINITY_DN41716_c0_g1:210	si_s84	TRINITY_DN41716_c0_g1	199	219	210	-32.30	-21.50	0.665634674922601	7.5	3-17,217-203;20-20,200-200	1-2,219-218[UP5];18-19,202-201[SIL];21-21,199-199[UP3]	.(..(((((((((((((((..&..)))))))))))))))..).	UGCUGAAGGAGAAAGGAGACA&UCUUUCCUUUCUUCUUCUUCG	2	0.999999999999116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN41716_c0_g1_210_TPlot.pdf
TRINITY_DN41716_c0_g1:216	si_s78	TRINITY_DN41716_c0_g1	205	225	216	-26.20	-17.20	0.656488549618321	16.5	9-21,217-205	1-8,225-218[UP5]	(((((((((((((........&........)))))))))))))	AGGAGAAAGGAGACAACGUAC&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN41716_c0_g1_216_TPlot.pdf
TRINITY_DN4172_c0_g1:874	si_s602	TRINITY_DN4172_c0_g1	863	887	874	-28.10	-19.90	0.708185053380783	11.5	1-6,887-882;7-18,877-866	x-x,881-878[BULt];19-21,865-863[UP3]	...((((((((((((....((((((&))))))----))))))))))))...	UUGAAAAGAGAUUCGAUGACUUGGA&UCCAAG----CGAAUCUUUUUUAAA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN4172_c0_g1_874_TPlot.pdf
TRINITY_DN4172_c0_g1:970	si_a633	TRINITY_DN4172_c0_g1	958	979	970	-26.40	-17.60	0.666666666666667	6.5	2-18,978-962;19-20,960-959	1-1,979-979[UP5];x-x,961-961[BULt];21-21,958-958[UP3]	.((.(((((((((((((((((.&.)))))))))))))))))-)).	AGCUUUAAGAAAAUCGAUGUAG&UUAUGUCGAUUUUUUUGA-GUA	2	0.999992104080873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4172_c0_g1_970_TPlot.pdf
TRINITY_DN4172_c0_g1:971	si_a632	TRINITY_DN4172_c0_g1	960	980	971	-26.10	-17.20	0.659003831417624	7.5	3-20,978-961	1-2,980-979[UP5];21-21,960-960[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CUUUAAGAAAAUCGAUGUAGA&AUUAUGUCGAUUUUUUUGAGU	3	0.999999999413034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4172_c0_g1_971_TPlot.pdf
TRINITY_DN4172_c0_g1:972	si_a631	TRINITY_DN4172_c0_g1	961	981	972	-25.70	-17.10	0.665369649805448	8.5	4-21,978-961	1-3,981-979[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUUAAGAAAAUCGAUGUAGAU&UAUUAUGUCGAUUUUUUUGAG	4	0.999998951818157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4172_c0_g1_972_TPlot.pdf
TRINITY_DN4172_c0_g1:980	si_s11	TRINITY_DN4172_c0_g1	970	989	980	-23.60	-16.40	0.694915254237288	5	1-8,989-982;10-10,980-980;12-21,979-970	9-9,981-981[SIL];11-11,x-x[BULq]	((((((((((-(.((((((((&)))))))).).))))))))))	AUCGAUGUAG-AUUAAUAAGU&ACUUAUUAUUACUAUAUUGAU	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN4172_c0_g1_980_TPlot.pdf
TRINITY_DN4173_c3_g1:1543	si_s73	TRINITY_DN4173_c3_g1	1529	1553	1543	-24.00	-15.80	0.658333333333333	10	1-2,1553-1552;3-11,1550-1542;12-21,1538-1529	x-x,1551-1551[BULt];x-x,1541-1539[BULt]	((((((((((...(((((((((.((&))-)))))))))---))))))))))	AGGGGAAAGAACGAAAAAGAUACGA&UC-UAUUUUUUU---UCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4173_c3_g1_1543_TPlot.pdf
TRINITY_DN4173_c3_g1:1544	si_s72	TRINITY_DN4173_c3_g1	1530	1554	1544	-24.10	-15.90	0.659751037344398	10	1-3,1554-1552;4-12,1550-1542;13-21,1538-1530	x-x,1551-1551[BULt];x-x,1541-1539[BULt]	(((((((((...(((((((((.(((&)))-)))))))))---)))))))))	GGGGAAAGAACGAAAAAGAUACGAA&UUC-UAUUUUUUU---UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4173_c3_g1_1544_TPlot.pdf
TRINITY_DN41747_c0_g1:232	si_s312	TRINITY_DN41747_c0_g1	219	241	232	-29.00	-19.40	0.668965517241379	12.5	5-13,237-229;14-21,226-219	1-4,241-238[UP5];x-x,228-227[BULt]	((((((((..(((((((((....&....)))))))))--))))))))	UAGCGGGGAGGGGACAGGAGAGG&AAAAUUCUGUCCU--UCUUGUUA	2	0.999998374711793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN41747_c0_g1_232_TPlot.pdf
TRINITY_DN41747_c0_g1:233	si_s83	TRINITY_DN41747_c0_g1	222	242	233	-30.90	-23.00	0.744336569579288	7.5	1-9,242-234;11-20,232-223	10-10,233-233[SIL];21-21,222-222[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CGGGGAGGGGACAGGAGAGGA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999757935342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN41747_c0_g1_233_TPlot.pdf
TRINITY_DN41747_c0_g1:234	si_s82	TRINITY_DN41747_c0_g1	223	243	234	-28.90	-23.40	0.809688581314879	7	1-10,243-234;12-21,232-223	11-11,233-233[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	GGGGAGGGGACAGGAGAGGAG&UUUCUUUCCUUUCUUCUUCUU	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN41747_c0_g1_234_TPlot.pdf
TRINITY_DN41747_c0_g1:235	si_s86	TRINITY_DN41747_c0_g1	220	244	235	-32.90	-25.20	0.765957446808511	14.5	2-10,243-235;11-21,230-220	1-1,244-244[UP5];x-x,234-231[BULt]	(((((((((((....(((((((((.&.)))))))))----)))))))))))	AGCGGGGAGGGGACAGGAGAGGAGG&UUUCCUUUCU----UCUUCUUCGCU	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN41747_c0_g1_235_TPlot.pdf
TRINITY_DN41747_c0_g1:244	si_s72	TRINITY_DN41747_c0_g1	233	262	244	-24.10	-16.40	0.680497925311203	24	1-8,262-255;9-20,245-234	x-x,254-246[BULt];21-21,233-233[UP3]	.((((((((((((.........((((((((&))))))))---------)))))))))))).	CAGGAGAGGAGGACGACGAUACGAAUGGAA&UUCUAUUU---------UUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN41747_c0_g1_244_TPlot.pdf
TRINITY_DN4174_c0_g1:1010	si_a785	TRINITY_DN4174_c0_g1	999	1019	1010	-25.90	-17.10	0.66023166023166	9	2-15,1018-1005	1-1,1019-1019[UP5];16-21,1004-999[UP3]	......((((((((((((((.&.))))))))))))))......	AGCUCAAGAGAAAUGGAAGAA&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4174_c0_g1_1010_TPlot.pdf
TRINITY_DN4174_c0_g1:1012	si_a783	TRINITY_DN4174_c0_g1	1001	1021	1012	-24.70	-17.10	0.692307692307692	10.5	4-17,1018-1005	1-3,1021-1019[UP5];18-21,1004-1001[UP3]	....((((((((((((((...&...))))))))))))))....	CUCAAGAGAAAUGGAAGAAGA&AACUCUUCUAUUUUUCUAUUU	2	0.999996067160338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4174_c0_g1_1012_TPlot.pdf
TRINITY_DN4174_c0_g1:1017	si_s76	TRINITY_DN4174_c0_g1	1006	1026	1017	-23.60	-16.70	0.707627118644068	5	2-14,1025-1013;16-21,1011-1006	1-1,1026-1026[UP5];15-15,1012-1012[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	GAGAAAUGGAAGAAGAAAAGG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4174_c0_g1_1017_TPlot.pdf
TRINITY_DN4175_c0_g1:295	si_a641	TRINITY_DN4175_c0_g1	284	304	295	-23.60	-16.40	0.694915254237288	8.5	4-15,301-290;17-21,288-284	1-3,304-302[UP5];16-16,289-289[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UGAUAGAUUGCUCAGAAAUUA&AUUUUUUUGAGUAAUAUAUCG	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN4175_c0_g1_295_TPlot.pdf
TRINITY_DN4175_c0_g1:296	si_a640	TRINITY_DN4175_c0_g1	285	305	296	-24.10	-15.70	0.651452282157676	9.5	5-16,301-290;18-21,288-285	1-4,305-302[UP5];17-17,289-289[SIL]	((((.((((((((((((....&....)))))))))))).))))	GAUAGAUUGCUCAGAAAUUAU&GAUUUUUUUGAGUAAUAUAUC	3	0.999998883256769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN4175_c0_g1_296_TPlot.pdf
TRINITY_DN4175_c0_g1:299	si_a637	TRINITY_DN4175_c0_g1	288	311	299	-25.80	-18.94	0.734108527131783	12.5	1-6,311-306;8-19,301-290	7-7,305-302[AILt];20-21,289-288[UP3]	..((((((((((((....((((((&))))))---.))))))))))))..	AGAUUGCUCAGAAAUUAUGUCGAC&GUCGAU---UUUUUUGAGUAAUAU	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4175_c0_g1_299_TPlot.pdf
TRINITY_DN4175_c0_g1:300	si_a636	TRINITY_DN4175_c0_g1	289	312	300	-26.30	-19.14	0.727756653992395	12.5	2-7,311-306;9-20,301-290	1-1,312-312[UP5];8-8,305-302[AILt];21-21,289-289[UP3]	.((((((((((((....((((((.&.))))))---.)))))))))))).	GAUUGCUCAGAAAUUAUGUCGACU&UGUCGAU---UUUUUUGAGUAAUA	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4175_c0_g1_300_TPlot.pdf
TRINITY_DN4175_c0_g1:301	si_a635	TRINITY_DN4175_c0_g1	290	313	301	-26.10	-18.74	0.718007662835249	13	3-8,311-306;10-21,301-290	1-2,313-312[UP5];9-9,305-302[AILt]	((((((((((((....((((((..&..))))))---.))))))))))))	AUUGCUCAGAAAUUAUGUCGACUG&AUGUCGAU---UUUUUUGAGUAAU	2	0.984919490894431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4175_c0_g1_301_TPlot.pdf
TRINITY_DN4175_c0_g1:302	si_a634	TRINITY_DN4175_c0_g1	291	314	302	-26.40	-17.54	0.664393939393939	15	4-9,311-306;11-21,301-291	1-3,314-312[UP5];10-10,305-302[AILt]	(((((((((((....((((((...&...))))))---.)))))))))))	UUGCUCAGAAAUUAUGUCGACUGU&UAUGUCGAU---UUUUUUGAGUAA	3	0.999999997153094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4175_c0_g1_302_TPlot.pdf
TRINITY_DN4175_c0_g1:413	si_a68	TRINITY_DN4175_c0_g1	404	420	413	-25.40	-16.80	0.661417322834646	9.5	1-8,420-413;13-20,412-405	9-12,x-x[BULq];21-21,404-404[UP3]	.((((((((----((((((((&))))))))....)))))))).	CGAGAAACA----GAAAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.999999999999704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4175_c0_g1_413_TPlot.pdf
TRINITY_DN4175_c0_g1:459	si_s84	TRINITY_DN4175_c0_g1	448	468	459	-32.30	-21.00	0.65015479876161	13	7-21,462-448	1-6,468-463[UP5]	(((((((((((((((......&......)))))))))))))))	UGAAGGAGAAGAGAGAUCUGU&UCUUUCCUUUCUUCUUCUUCG	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4175_c0_g1_459_TPlot.pdf
TRINITY_DN4175_c0_g1:460	si_a324	TRINITY_DN4175_c0_g1	449	470	460	-27.50	-19.00	0.690909090909091	8.5	1-4,470-467;5-13,465-457;15-20,455-450	x-x,466-466[BULt];14-14,456-456[SIL];21-21,449-449[UP3]	.((((((.(((((((((.((((&))))-))))))))).)))))).	GAAGGAGAAGAGAGAUCUGUGG&CCAU-GAUUUUUUUAUUCCUUG	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN4175_c0_g1_460_TPlot.pdf
TRINITY_DN4175_c0_g1:461	si_a323	TRINITY_DN4175_c0_g1	450	471	461	-26.80	-18.60	0.694029850746269	8	2-5,470-467;6-14,465-457;16-21,455-450	1-1,471-471[UP5];x-x,466-466[BULt];15-15,456-456[SIL]	((((((.(((((((((.((((.&.))))-))))))))).))))))	AAGGAGAAGAGAGAUCUGUGGG&UCCAU-GAUUUUUUUAUUCCUU	2	0.992394551209544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN4175_c0_g1_461_TPlot.pdf
TRINITY_DN4175_c0_g1:462	si_a322	TRINITY_DN4175_c0_g1	451	472	462	-27.00	-17.70	0.655555555555556	10	3-6,470-467;7-15,465-457;17-21,455-451	1-2,472-471[UP5];x-x,466-466[BULt];16-16,456-456[SIL]	(((((.(((((((((.((((..&..))))-))))))))).)))))	AGGAGAAGAGAGAUCUGUGGGA&AUCCAU-GAUUUUUUUAUUCCU	2	0.999957093544132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN4175_c0_g1_462_TPlot.pdf
TRINITY_DN41764_c0_g1:320	si_s64	TRINITY_DN41764_c0_g1	309	329	320	-24.10	-15.70	0.651452282157676	11	4-11,326-319;13-19,317-311	1-3,329-327[UP5];12-12,318-318[SIL];20-21,310-309[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	GCAAGAAGUUGAGGUUGCAAG&UUAGCAACUUCUAUUUUUUUU	4	0.999999999999936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN41764_c0_g1_320_TPlot.pdf
TRINITY_DN41784_c1_g1:193	si_s82	TRINITY_DN41784_c1_g1	182	202	193	-28.90	-19.68	0.680968858131488	4	1-15,202-188;19-21,184-182	16-18,187-185[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	AAGUCAGGGAAAGGAAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN41784_c1_g1_193_TPlot.pdf
TRINITY_DN41784_c1_g1:194	si_s81	TRINITY_DN41784_c1_g1	183	203	194	-28.90	-19.80	0.685121107266436	6	1-16,203-188	17-21,187-183[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGUCAGGGAAAGGAAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN41784_c1_g1_194_TPlot.pdf
TRINITY_DN41784_c1_g1:198	si_s72	TRINITY_DN41784_c1_g1	187	210	198	-24.10	-18.90	0.784232365145228	9	2-6,209-205;7-21,201-187	1-1,210-210[UP5];x-x,204-202[BULt]	(((((((((((((((...(((((.&.)))))---)))))))))))))))	AGGGAAAGGAAAGAAAAUAUAGAG&UUCUAU---UUUUUUUCUUUCCUU	2	0.996972158701439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN41784_c1_g1_198_TPlot.pdf
TRINITY_DN41784_c1_g1:199	si_s76	TRINITY_DN41784_c1_g1	188	208	199	-23.60	-19.80	0.838983050847458	10	6-21,203-188	1-5,208-204[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGAAAGGAAAGAAAAUAUAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN41784_c1_g1_199_TPlot.pdf
TRINITY_DN41784_c1_g1:200	si_s75	TRINITY_DN41784_c1_g1	189	209	200	-24.00	-19.50	0.8125	11.5	7-21,203-189	1-6,209-204[UP5]	(((((((((((((((......&......)))))))))))))))	GGAAAGGAAAGAAAAUAUAGA&UAUUUUUUUUCUUUCCUUUCU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN41784_c1_g1_200_TPlot.pdf
TRINITY_DN41784_c1_g1:201	si_s74	TRINITY_DN41784_c1_g1	190	208	201	-25.00	-18.90	0.756	6	1-4,208-205;8-21,203-190	5-7,204-204[AILq]	((((((((((((((.--((((&))))...))))))))))))))	GAAAGGAAAGAAAAU--AUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN41784_c1_g1_201_TPlot.pdf
TRINITY_DN4178_c0_g1:528	si_a784	TRINITY_DN4178_c0_g1	517	538	528	-24.70	-16.80	0.680161943319838	6.5	1-2,538-537;3-7,535-531;9-21,529-517	x-x,536-536[BULt];8-8,530-530[SIL]	(((((((((((((.(((((.((&))-))))).)))))))))))))	AGAAUGGAGAAAUUGAAGGCGU&AC-UCUUCUAUUUUUCUAUUUU	2	0.999999988948847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4178_c0_g1_528_TPlot.pdf
TRINITY_DN4178_c0_g1:529	si_a783	TRINITY_DN4178_c0_g1	518	539	529	-24.70	-16.20	0.65587044534413	7.5	2-3,538-537;4-8,535-531;10-21,529-518	1-1,539-539[UP5];x-x,536-536[BULt];9-9,530-530[SIL]	((((((((((((.(((((.((.&.))-))))).))))))))))))	GAAUGGAGAAAUUGAAGGCGUA&AAC-UCUUCUAUUUUUCUAUUU	2	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4178_c0_g1_529_TPlot.pdf
TRINITY_DN4178_c0_g1:613	si_s80	TRINITY_DN4178_c0_g1	600	622	613	-28.20	-20.60	0.730496453900709	4.5	1-14,622-609;16-21,605-600	15-15,608-606[AILt]	((((((...((((((((((((((&))))))))))))))--.))))))	GAGGAACAAAAAGGAAAGAAGAA&UUUUUCUUUCCUUU--CUUCUUC	4	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4178_c0_g1_613_TPlot.pdf
TRINITY_DN4178_c0_g1:709	si_s75	TRINITY_DN4178_c0_g1	698	720	709	-24.00	-16.70	0.695833333333333	6.5	1-7,720-714;8-17,711-702;19-21,700-698	x-x,713-712[BULt];18-18,701-701[SIL]	(((.((((((((((..(((((((&)))))))--)))))))))).)))	AGGUAGGAAAGAAAUGGAAAAUA&UAUUUUU--UUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4178_c0_g1_709_TPlot.pdf
TRINITY_DN41793_c0_g1:228	si_s78	TRINITY_DN41793_c0_g1	216	240	228	-26.20	-17.70	0.675572519083969	11.5	1-9,240-232;10-17,228-221;18-21,219-216	x-x,231-229[BULt];x-x,220-220[BULt]	((((.((((((((...(((((((((&)))))))))---))))))))-))))	GGAAGGAAAGGGAGCUGGAAAAGGA&UUUUUUUCU---UUCCUUUC-UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN41793_c0_g1_228_TPlot.pdf
TRINITY_DN41793_c0_g1:232	si_s77	TRINITY_DN41793_c0_g1	218	241	232	-25.50	-17.80	0.698039215686275	11.5	1-10,241-232;11-20,228-219	x-x,231-229[BULt];21-21,218-218[UP3]	.((((((((((...((((((((((&))))))))))---)))))))))).	AAGGAAAGGGAGCUGGAAAAGGAA&UUUUUUUUCU---UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN41793_c0_g1_232_TPlot.pdf
TRINITY_DN41793_c0_g1:233	si_s76	TRINITY_DN41793_c0_g1	219	242	233	-23.60	-17.80	0.754237288135593	11	2-11,241-232;12-21,228-219	1-1,242-242[UP5];x-x,231-229[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	AGGAAAGGGAGCUGGAAAAGGAAA&AUUUUUUUUCU---UUCCUUUCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN41793_c0_g1_233_TPlot.pdf
TRINITY_DN41793_c0_g1:234	si_s75	TRINITY_DN41793_c0_g1	220	243	234	-24.00	-17.00	0.708333333333333	13	3-12,241-232;13-21,228-220	1-2,243-242[UP5];x-x,231-229[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	GGAAAGGGAGCUGGAAAAGGAAAU&UAUUUUUUUUCU---UUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN41793_c0_g1_234_TPlot.pdf
TRINITY_DN417_c0_g1:3679	si_s822	TRINITY_DN417_c0_g1	3668	3689	3679	-22.30	-15.50	0.695067264573991	9	2-9,3688-3681;11-18,3678-3671	1-1,3689-3689[UP5];10-10,3680-3679[AILt];19-21,3670-3668[UP3]	...((((((((..((((((((.&.))))))))-.))))))))...	AGAGUUUUUCAGAUAUUGAGAU&UUCUUAAUA-AUGAAAAACAAU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN417_c0_g1_3679_TPlot.pdf
TRINITY_DN417_c0_g1:3681	si_s821	TRINITY_DN417_c0_g1	3669	3690	3681	-22.20	-15.50	0.698198198198198	10	3-10,3688-3681;12-19,3678-3671	1-2,3690-3689[UP5];11-11,3680-3679[AILt];20-21,3670-3669[UP3]	..((((((((..((((((((..&..))))))))-.))))))))..	GAGUUUUUCAGAUAUUGAGAUA&UUUCUUAAUA-AUGAAAAACAA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN417_c0_g1_3681_TPlot.pdf
TRINITY_DN417_c0_g1:3682	si_s820	TRINITY_DN417_c0_g1	3670	3691	3682	-22.10	-15.50	0.701357466063348	11	4-11,3688-3681;13-20,3678-3671	1-3,3691-3689[UP5];12-12,3680-3679[AILt];21-21,3670-3670[UP3]	.((((((((..((((((((...&...))))))))-.)))))))).	AGUUUUUCAGAUAUUGAGAUAA&UUUUCUUAAUA-AUGAAAAACA	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN417_c0_g1_3682_TPlot.pdf
TRINITY_DN417_c0_g1:3683	si_s819	TRINITY_DN417_c0_g1	3671	3692	3683	-23.00	-15.00	0.652173913043478	11	5-12,3688-3681;14-21,3678-3671	1-4,3692-3689[UP5];13-13,3680-3679[AILt]	((((((((..((((((((....&....))))))))-.))))))))	GUUUUUCAGAUAUUGAGAUAAC&CUUUUCUUAAUA-AUGAAAAAC	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN417_c0_g1_3683_TPlot.pdf
TRINITY_DN417_c0_g1:3850	si_s765	TRINITY_DN417_c0_g1	3839	3860	3850	-25.70	-17.82	0.693385214007782	10.5	1-9,3860-3852;13-21,3847-3839	10-12,3851-3848[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	CAAUAGUGAGAACGUUGUUGUU&AACAACGAU-UAAUUACUAUUG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s765_TRINITY_DN417_c0_g1_3850_TPlot.pdf
TRINITY_DN417_c0_g1:3854	si_s453	TRINITY_DN417_c0_g1	3843	3863	3854	-25.70	-19.10	0.743190661478599	6.5	2-12,3862-3852;15-20,3849-3844	1-1,3863-3863[UP5];13-14,3851-3850[SIL];21-21,3843-3843[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	AGUGAGAACGUUGUUGUUGUU&UAUAACAACAAUUAUCUCAUA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s453_TRINITY_DN417_c0_g1_3854_TPlot.pdf
TRINITY_DN417_c0_g1:3855	si_s452	TRINITY_DN417_c0_g1	3844	3864	3855	-25.50	-18.60	0.729411764705882	7	3-13,3862-3852;16-21,3849-3844	1-2,3864-3863[UP5];14-15,3851-3850[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GUGAGAACGUUGUUGUUGUUA&AUAUAACAACAAUUAUCUCAU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s452_TRINITY_DN417_c0_g1_3855_TPlot.pdf
TRINITY_DN4181_c0_g1:191	si_a382	TRINITY_DN4181_c0_g1	180	201	191	-24.60	-16.50	0.670731707317073	5	1-4,201-198;5-20,196-181	x-x,197-197[BULt];21-21,180-180[UP3]	.((((((((((((((((.((((&))))-)))))))))))))))).	UUGUUUUUAAUUCGAAACUUAU&AUGA-UUUCGAAUUAAGAAUAU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN4181_c0_g1_191_TPlot.pdf
TRINITY_DN41827_c0_g1:89	si_s315	TRINITY_DN41827_c0_g1	78	98	89	-31.60	-21.00	0.664556962025316	7	1-14,98-85;16-17,83-82	15-15,84-84[SIL];18-21,81-78[UP3]	....((.((((((((((((((&)))))))))))))).))....	CAAGGAAGAGAAGGACAGGAU&AUUCUGUCCUUCUUGUUACAA	1	0.140822596207582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN41827_c0_g1_89_TPlot.pdf
TRINITY_DN4182_c0_g1:1852	si_s99	TRINITY_DN4182_c0_g1	1841	1861	1852	-34.60	-22.50	0.65028901734104	8.5	2-5,1860-1857;7-18,1855-1844	1-1,1861-1861[UP5];6-6,1856-1856[SIL];19-21,1843-1841[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UUAUCUGGUCCGAGGAGAAGG&UCUUCGCUUCGGAUUGGAAAA	4	0.999953229570889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN4182_c0_g1_1852_TPlot.pdf
TRINITY_DN4182_c0_g1:5341	si_a633	TRINITY_DN4182_c0_g1	5330	5350	5341	-26.40	-18.80	0.712121212121212	9	1-18,5350-5333	19-21,5332-5330[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGAUCAAGGGAGUCGAUGUGA&UUAUGUCGAUUUUUUUGAGUA	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4182_c0_g1_5341_TPlot.pdf
TRINITY_DN4182_c0_g1:5342	si_a632	TRINITY_DN4182_c0_g1	5331	5351	5342	-26.10	-18.80	0.720306513409962	8.5	2-19,5350-5333	1-1,5351-5351[UP5];20-21,5332-5331[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GAUCAAGGGAGUCGAUGUGAA&AUUAUGUCGAUUUUUUUGAGU	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4182_c0_g1_5342_TPlot.pdf
TRINITY_DN4182_c0_g1:5343	si_a631	TRINITY_DN4182_c0_g1	5332	5352	5343	-25.70	-18.80	0.731517509727627	9.5	3-20,5350-5333	1-2,5352-5351[UP5];21-21,5332-5332[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AUCAAGGGAGUCGAUGUGAAU&UAUUAUGUCGAUUUUUUUGAG	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4182_c0_g1_5343_TPlot.pdf
TRINITY_DN4182_c0_g1:5344	si_a630	TRINITY_DN4182_c0_g1	5333	5355	5344	-25.80	-19.40	0.751937984496124	10	1-3,5355-5353;4-21,5350-5333	x-x,5352-5351[BULt]	((((((((((((((((((..(((&)))--))))))))))))))))))	UCAAGGGAGUCGAUGUGAAUUGC&GUA--UUAUGUCGAUUUUUUUGA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN4182_c0_g1_5344_TPlot.pdf
TRINITY_DN4182_c0_g1:5419	si_a46	TRINITY_DN4182_c0_g1	5408	5431	5419	-42.10	-27.40	0.65083135391924	12	1-9,5431-5423;10-17,5419-5412	x-x,5422-5420[BULt];18-21,5411-5408[UP3]	....((((((((...(((((((((&)))))))))---))))))))....	UCACCGACUCCUUCCGGAUCUACC&GGUAGGUCU---AGGAGUCGACUC	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN4182_c0_g1_5419_TPlot.pdf
TRINITY_DN4182_c0_g1:5423	si_a45	TRINITY_DN4182_c0_g1	5409	5432	5423	-41.60	-27.80	0.668269230769231	12	2-10,5431-5423;11-18,5419-5412	1-1,5432-5432[UP5];x-x,5422-5420[BULt];19-21,5411-5409[UP3]	...((((((((...(((((((((.&.)))))))))---))))))))...	CACCGACUCCUUCCGGAUCUACCU&CGGUAGGUCU---AGGAGUCGACU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a45_TRINITY_DN4182_c0_g1_5423_TPlot.pdf
TRINITY_DN4182_c0_g1:5425	si_a43	TRINITY_DN4182_c0_g1	5411	5434	5425	-42.30	-27.80	0.657210401891253	14	4-12,5431-5423;13-20,5419-5412	1-3,5434-5432[UP5];x-x,5422-5420[BULt];21-21,5411-5411[UP3]	.((((((((...(((((((((...&...)))))))))---)))))))).	CCGACUCCUUCCGGAUCUACCUCU&ACCGGUAGGUCU---AGGAGUCGA	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN4182_c0_g1_5425_TPlot.pdf
TRINITY_DN4182_c0_g1:5519	si_s854	TRINITY_DN4182_c0_g1	5509	5531	5519	-42.10	-27.50	0.653206650831354	9	1-7,5531-5525;8-12,5521-5517;14-20,5516-5510	x-x,5524-5522[BULt];13-13,x-x[BULq];21-21,5509-5509[UP3]	.(((((((-(((((...(((((((&)))))))---))))).))))))).	CGUGGGUC-AGGAGAGCUCGACUU&GAGUCGA---CUCCUAGACCUACC	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s854_TRINITY_DN4182_c0_g1_5519_TPlot.pdf
TRINITY_DN4182_c0_g1:5520	si_s853	TRINITY_DN4182_c0_g1	5510	5533	5520	-41.20	-28.30	0.686893203883495	9.5	1-3,5533-5531;4-8,5529-5525;9-13,5521-5517;15-21,5516-5510	x-x,5530-5530[BULt];x-x,5524-5522[BULt];14-14,x-x[BULq]	(((((((-(((((...(((((.(((&)))-)))))---))))).)))))))	GUGGGUC-AGGAGAGCUCGACUUCG&CGA-GUCGA---CUCCUAGACCUAC	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s853_TRINITY_DN4182_c0_g1_5520_TPlot.pdf
TRINITY_DN4185_c0_g1:5216	si_s78	TRINITY_DN4185_c0_g1	5205	5225	5216	-26.20	-22.30	0.851145038167939	6.5	2-5,5224-5221;7-21,5219-5205	1-1,5225-5225[UP5];6-6,5220-5220[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	AGAAGAGAGGAGAGGCAAGAC&UUUUUUUCUUUCCUUUCUUCU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4185_c0_g1_5216_TPlot.pdf
TRINITY_DN4185_c0_g1:5477	si_a39	TRINITY_DN4185_c0_g1	5466	5486	5477	-40.10	-27.20	0.678304239401496	11	4-16,5483-5471	1-3,5486-5484[UP5];17-21,5470-5466[UP3]	.....(((((((((((((...&...))))))))))))).....	CAACGAGACCUGCCGGUCAAA&UAAGACCGGUAGGUCUAGGAG	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a39_TRINITY_DN4185_c0_g1_5477_TPlot.pdf
TRINITY_DN4185_c0_g1:5481	si_a35	TRINITY_DN4185_c0_g1	5470	5490	5481	-37.80	-27.20	0.71957671957672	14.5	8-20,5483-5471	1-7,5490-5484[UP5];21-21,5470-5470[UP3]	.(((((((((((((.......&.......))))))))))))).	GAGACCUGCCGGUCAAAAGCG&GUUCUAAGACCGGUAGGUCUA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN4185_c0_g1_5481_TPlot.pdf
TRINITY_DN4185_c0_g1:5560	si_s635	TRINITY_DN4185_c0_g1	5548	5567	5560	-39.80	-26.00	0.653266331658292	8	1-6,5567-5562;9-17,5561-5553;18-20,5551-5549	7-8,x-x[BULq];x-x,5552-5552[BULt];21-21,5548-5548[UP3]	.(((.(((((((((--((((((&))))))..)))))))))-))).	GGAGCGGCAAGCGC--ACGAGA&UUUCGUAGGCGUUUGCC-CUCG	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN4185_c0_g1_5560_TPlot.pdf
TRINITY_DN4185_c0_g1:5986	si_s797	TRINITY_DN4185_c0_g1	5975	5993	5986	-30.00	-19.98	0.666	10	1-6,5993-5988;11-20,5985-5976	7-10,5987-5986[AILq];21-21,5975-5975[UP3]	.((((((((((..--((((((&))))))....)))))))))).	AAGCGAAGAUACG--ACGAGU&GCUCGUAUUUUAUCUUCGUUA	2	0.999920055731936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN4185_c0_g1_5986_TPlot.pdf
TRINITY_DN4185_c0_g1:5987	si_s796	TRINITY_DN4185_c0_g1	5976	5994	5987	-30.30	-20.58	0.679207920792079	9.5	1-7,5994-5988;12-21,5985-5976	8-11,5987-5986[AILq]	((((((((((..--(((((((&)))))))....))))))))))	AGCGAAGAUACG--ACGAGUU&AGCUCGUAUUUUAUCUUCGUU	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN4185_c0_g1_5987_TPlot.pdf
TRINITY_DN4185_c0_g1:5988	si_s795	TRINITY_DN4185_c0_g1	5977	5995	5988	-30.30	-20.08	0.662706270627063	10.5	2-8,5994-5988;13-21,5985-5977	1-1,5995-5995[UP5];9-12,5987-5986[AILq]	(((((((((..--(((((((.&.)))))))....)))))))))	GCGAAGAUACG--ACGAGUUG&AAGCUCGUAUUUUAUCUUCGU	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN4185_c0_g1_5988_TPlot.pdf
TRINITY_DN4185_c0_g1:7407	si_s375	TRINITY_DN4185_c0_g1	7397	7416	7407	-44.10	-28.90	0.655328798185941	8	1-2,7416-7415;4-10,7413-7407;12-13,7406-7405;15-19,7403-7399	3-3,7414-7414[SIL];11-11,x-x[BULq];14-14,7404-7404[SIL];20-21,7398-7397[UP3]	..(((((.((-(((((((.((&)).))))))).)).)))))..	ACGGCGGUCA-GCGGGCGUUC&GAUCGCUCGCGUGUCCGCCUU	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN4185_c0_g1_7407_TPlot.pdf
TRINITY_DN4185_c0_g1:7955	si_s662	TRINITY_DN4185_c0_g1	7943	7964	7955	-35.40	-23.80	0.672316384180791	8	2-4,7963-7961;6-15,7959-7950;16-19,7948-7945	1-1,7964-7964[UP5];5-5,7960-7960[SIL];x-x,7949-7949[BULt];20-21,7944-7943[UP3]	..((((.((((((((((.(((.&.))).))))))))))-))))..	ACAAUCGGGUUCGGUCCGCCGG&UCGGGGGAUCGAAUU-GAUUAU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN4185_c0_g1_7955_TPlot.pdf
TRINITY_DN4185_c0_g1:7957	si_s660	TRINITY_DN4185_c0_g1	7945	7966	7957	-35.00	-23.60	0.674285714285714	10	4-6,7963-7961;8-17,7959-7950;18-21,7948-7945	1-3,7966-7964[UP5];7-7,7960-7960[SIL];x-x,7949-7949[BULt]	((((.((((((((((.(((...&...))).))))))))))-))))	AAUCGGGUUCGGUCCGCCGGAG&AAUCGGGGGAUCGAAUU-GAUU	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN4185_c0_g1_7957_TPlot.pdf
TRINITY_DN4186_c0_g2:1405	si_s476	TRINITY_DN4186_c0_g2	1395	1415	1405	-28.40	-18.80	0.661971830985915	5.5	1-9,1415-1407;10-12,1405-1403;14-21,1402-1395	x-x,1406-1406[BULt];13-13,x-x[BULq]	((((((((-(((.(((((((((&)))))))))-))).))))))))	GAAUGGAU-UAGUGAUCUGUUG&CAACGGAUC-CUAUAUUUAUUU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN4186_c0_g2_1405_TPlot.pdf
TRINITY_DN4187_c0_g2:39	si_a107	TRINITY_DN4187_c0_g2	28	49	39	-30.50	-21.30	0.698360655737705	5	1-5,49-45;7-12,42-37;14-21,35-28	6-6,44-43[AILt];13-13,36-36[SIL]	((((((((.((((((..(((((&)))))-.)))))).))))))))	ACAAGCUCUUAUUUUCUUCUUC&GAAGA-UAAAAUACGAGCUUGU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a107_TRINITY_DN4187_c0_g2_39_TPlot.pdf
TRINITY_DN4187_c0_g2:40	si_a106	TRINITY_DN4187_c0_g2	29	50	40	-31.20	-21.60	0.692307692307692	5	1-6,50-45;8-13,42-37;15-21,35-29	7-7,44-43[AILt];14-14,36-36[SIL]	(((((((.((((((..((((((&))))))-.)))))).)))))))	CAAGCUCUUAUUUUCUUCUUCG&CGAAGA-UAAAAUACGAGCUUG	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a106_TRINITY_DN4187_c0_g2_40_TPlot.pdf
TRINITY_DN4187_c0_g2:44	si_a813	TRINITY_DN4187_c0_g2	33	53	44	-32.90	-24.10	0.732522796352584	4	2-15,52-39;17-20,37-34	1-1,53-53[UP5];16-16,38-38[SIL];21-21,33-33[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	CUCUUAUUUUCUUCUUCGCUG&AAGCGAAGAAGAAGAAAGGAA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN4187_c0_g2_44_TPlot.pdf
TRINITY_DN4187_c0_g3:89	si_s894	TRINITY_DN4187_c0_g3	78	97	89	-29.10	-19.20	0.65979381443299	6.5	1-6,97-92;8-17,91-82	7-7,x-x[BULq];18-21,81-78[UP3]	....((((((((((-((((((&)))))).))))))))))....	UACCUGGAGAGAAA-CCUAUU&AAUAGGCUUUCUCUUCAAUUU	3	0.999999993855855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4187_c0_g3_89_TPlot.pdf
TRINITY_DN4187_c0_g3:90	si_s893	TRINITY_DN4187_c0_g3	79	98	90	-29.10	-19.40	0.666666666666667	6.5	2-7,97-92;9-18,91-82	1-1,98-98[UP5];8-8,x-x[BULq];19-21,81-79[UP3]	...((((((((((-((((((.&.)))))).))))))))))...	ACCUGGAGAGAAA-CCUAUUC&AAAUAGGCUUUCUCUUCAAUU	3	0.9999995509213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4187_c0_g3_90_TPlot.pdf
TRINITY_DN4187_c0_g3:91	si_s892	TRINITY_DN4187_c0_g3	80	99	91	-29.50	-19.40	0.657627118644068	7.5	3-8,97-92;10-19,91-82	1-2,99-98[UP5];9-9,x-x[BULq];20-21,81-80[UP3]	..((((((((((-((((((..&..)))))).))))))))))..	CCUGGAGAGAAA-CCUAUUCU&UAAAUAGGCUUUCUCUUCAAU	4	0.9999993743736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4187_c0_g3_91_TPlot.pdf
TRINITY_DN4187_c0_g3:92	si_s891	TRINITY_DN4187_c0_g3	81	100	92	-29.60	-19.40	0.655405405405405	8.5	4-9,97-92;11-20,91-82	1-3,100-98[UP5];10-10,x-x[BULq];21-21,81-81[UP3]	.((((((((((-((((((...&...)))))).)))))))))).	CUGGAGAGAAA-CCUAUUCUC&AUAAAUAGGCUUUCUCUUCAA	3	0.999998487030107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4187_c0_g3_92_TPlot.pdf
TRINITY_DN4187_c1_g1:2295	si_a643	TRINITY_DN4187_c1_g1	2283	2304	2295	-28.30	-19.60	0.692579505300353	12	4-11,2301-2294;13-20,2291-2284	1-3,2304-2302[UP5];12-12,2293-2292[AILt];21-21,2283-2283[UP3]	.((((((((..((((((((...&...))))))))-.)))))))).	ACCGAUAUAGCUGCUCAAGCUC&UUUUUUGAGUA-AUAUAUCGGG	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN4187_c1_g1_2295_TPlot.pdf
TRINITY_DN4187_c1_g1:3642	si_s39	TRINITY_DN4187_c1_g1	3631	3651	3642	-22.30	-15.00	0.672645739910314	11	4-13,3648-3639;15-18,3637-3634	1-3,3651-3649[UP5];14-14,3638-3638[SIL];19-21,3633-3631[UP3]	...((((.((((((((((...&...)))))))))).))))...	UCUUCCAUUUGUUGAAGAAUU&AAAUCUUUAAUAAUUGGAUUU	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN4187_c1_g1_3642_TPlot.pdf
TRINITY_DN4187_c1_g1:3729	si_s602	TRINITY_DN4187_c1_g1	3718	3740	3729	-28.10	-18.30	0.651245551601424	9.5	1-7,3740-3734;8-18,3731-3721	x-x,3733-3732[BULt];19-21,3720-3718[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	CUAAAGGAGGAUUCUGGUUUGGA&UCCAAGC--GAAUCUUUUUUAAA	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN4187_c1_g1_3729_TPlot.pdf
TRINITY_DN4187_c1_g1:3731	si_s600	TRINITY_DN4187_c1_g1	3720	3742	3731	-28.20	-20.50	0.726950354609929	7.5	1-9,3742-3734;10-20,3731-3721	x-x,3733-3732[BULt];21-21,3720-3720[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	AAAGGAGGAUUCUGGUUUGGAUU&AAUCCAAGC--GAAUCUUUUUUA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN4187_c1_g1_3731_TPlot.pdf
TRINITY_DN4187_c1_g1:3734	si_s599	TRINITY_DN4187_c1_g1	3721	3743	3734	-27.80	-20.40	0.733812949640288	7.5	2-10,3742-3734;11-21,3731-3721	1-1,3743-3743[UP5];x-x,3733-3732[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	AAGGAGGAUUCUGGUUUGGAUUA&AAAUCCAAGC--GAAUCUUUUUU	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN4187_c1_g1_3734_TPlot.pdf
TRINITY_DN4187_c1_g1:3735	si_s598	TRINITY_DN4187_c1_g1	3722	3744	3735	-28.20	-19.50	0.691489361702128	9.5	3-11,3742-3734;12-21,3731-3722	1-2,3744-3743[UP5];x-x,3733-3732[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	AGGAGGAUUCUGGUUUGGAUUAC&UAAAUCCAAGC--GAAUCUUUUU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN4187_c1_g1_3735_TPlot.pdf
TRINITY_DN4187_c1_g2:1168	si_s79	TRINITY_DN4187_c1_g2	1154	1179	1168	-26.20	-17.30	0.66030534351145	9	1-7,1179-1173;8-17,1170-1161;18-21,1157-1154	x-x,1172-1171[BULt];x-x,1160-1158[BULt]	((((...((((((((((..(((((((&)))))))--))))))))))---))))	GAGACUCAGAGAGGAAAUUGAAGAAA&UUUUUUC--UUUCCUUUCU---UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4187_c1_g2_1168_TPlot.pdf
TRINITY_DN4187_c1_g2:1173	si_s76	TRINITY_DN4187_c1_g2	1160	1182	1173	-23.60	-15.90	0.673728813559322	11.5	4-10,1179-1173;11-20,1170-1161	1-3,1182-1180[UP5];x-x,1172-1171[BULt];21-21,1160-1160[UP3]	.((((((((((..(((((((...&...)))))))--)))))))))).	CAGAGAGGAAAUUGAAGAAACCU&AUUUUUUUUC--UUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4187_c1_g2_1173_TPlot.pdf
TRINITY_DN4187_c1_g2:888	si_s76	TRINITY_DN4187_c1_g2	874	897	888	-23.60	-17.10	0.724576271186441	5	2-15,896-883;16-20,879-875	1-1,897-897[UP5];x-x,882-880[BULt];21-21,874-874[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	UAGAAACACGGAAAGAAAAAAAAA&AUUUUUUUUCUUUCC---UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4187_c1_g2_888_TPlot.pdf
TRINITY_DN4187_c1_g2:891	si_s73	TRINITY_DN4187_c1_g2	880	900	891	-24.00	-15.90	0.6625	10	5-18,896-883	1-4,900-897[UP5];19-21,882-880[UP3]	...((((((((((((((....&....))))))))))))))...	CACGGAAAGAAAAAAAAAUCG&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4187_c1_g2_891_TPlot.pdf
TRINITY_DN4187_c1_g2:892	si_s72	TRINITY_DN4187_c1_g2	881	901	892	-24.10	-15.90	0.659751037344398	11	6-19,896-883	1-5,901-897[UP5];20-21,882-881[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACGGAAAGAAAAAAAAAUCGU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4187_c1_g2_892_TPlot.pdf
TRINITY_DN4189_c0_g1:46	si_s29	TRINITY_DN4189_c0_g1	34	55	46	-26.40	-19.80	0.75	8.5	1-11,55-45;14-19,41-36	12-13,44-42[AILt];20-21,35-34[UP3]	..((((((...(((((((((((&)))))))))))-..))))))..	GAUGAAGACUAUAGUUGCAGUC&GAUUGCAACUA-AAUCUUUAAU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN4189_c0_g1_46_TPlot.pdf
TRINITY_DN4189_c0_g1:47	si_s28	TRINITY_DN4189_c0_g1	35	56	47	-27.00	-20.60	0.762962962962963	6.5	1-12,56-45;15-20,41-36	13-14,44-42[AILt];21-21,35-35[UP3]	.((((((...((((((((((((&))))))))))))-..)))))).	AUGAAGACUAUAGUUGCAGUCA&UGAUUGCAACUA-AAUCUUUAA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN4189_c0_g1_47_TPlot.pdf
TRINITY_DN4189_c0_g1:48	si_s27	TRINITY_DN4189_c0_g1	36	57	48	-27.00	-20.60	0.762962962962963	5.5	2-13,56-45;16-21,41-36	1-1,57-57[UP5];14-15,44-42[AILt]	((((((...((((((((((((.&.))))))))))))-..))))))	UGAAGACUAUAGUUGCAGUCAU&UUGAUUGCAACUA-AAUCUUUA	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN4189_c0_g1_48_TPlot.pdf
TRINITY_DN4189_c0_g1:49	si_s26	TRINITY_DN4189_c0_g1	37	58	49	-26.70	-19.50	0.730337078651685	7.5	3-14,56-45;17-21,41-37	1-2,58-57[UP5];15-16,44-42[AILt]	(((((...((((((((((((..&..))))))))))))-..)))))	GAAGACUAUAGUUGCAGUCAUU&AUUGAUUGCAACUA-AAUCUUU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN4189_c0_g1_49_TPlot.pdf
TRINITY_DN4189_c0_g1:59	si_s353	TRINITY_DN4189_c0_g1	47	68	59	-26.90	-18.90	0.702602230483271	5.5	1-11,68-58;14-18,55-51;19-21,49-47	12-13,57-56[SIL];x-x,50-50[BULt]	(((.(((((..(((((((((((&)))))))))))..)))))-)))	GUUGCAGUCAUUUUCUUUGUCU&AGAUAAAGAAAUAGAUUG-AAC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN4189_c0_g1_59_TPlot.pdf
TRINITY_DN4189_c0_g1:60	si_s352	TRINITY_DN4189_c0_g1	49	69	60	-27.20	-17.90	0.658088235294118	6.5	2-12,68-58;15-19,55-51	1-1,69-69[UP5];13-14,57-56[SIL];20-21,50-49[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	UGCAGUCAUUUUCUUUGUCUG&GAGAUAAAGAAAUAGAUUGAA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN4189_c0_g1_60_TPlot.pdf
TRINITY_DN418_c0_g1:1138	si_a785	TRINITY_DN418_c0_g1	1126	1147	1138	-25.90	-17.70	0.683397683397683	5.5	1-6,1147-1142;8-15,1140-1133;17-21,1130-1126	7-7,1141-1141[SIL];16-16,1132-1131[AILt]	(((((..((((((((.((((((&)))))).))))))))-.)))))	GAAAAAGAGGAAAGUCGAAGAG&CUCUUCUAUUUUUCU-AUUUUC	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN418_c0_g1_1138_TPlot.pdf
TRINITY_DN4190_c0_g1:2972	si_s255	TRINITY_DN4190_c0_g1	2961	2981	2972	-29.40	-19.20	0.653061224489796	8	1-10,2981-2972;12-16,2970-2966	11-11,2971-2971[SIL];17-21,2965-2961[UP3]	.....(((((.((((((((((&)))))))))).))))).....	UAUCAAGUAAAAUGUCGGGAA&UUCCCGAUAUAUUACUCAAAA	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN4190_c0_g1_2972_TPlot.pdf
TRINITY_DN4192_c0_g1:2515	si_a406	TRINITY_DN4192_c0_g1	2504	2524	2515	-19.80	-13.50	0.681818181818182	11.5	2-15,2523-2510	1-1,2524-2524[UP5];16-21,2509-2504[UP3]	......((((((((((((((.&.))))))))))))))......	AAUCAUUGUAAGCGAGGCAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4192_c0_g1_2515_TPlot.pdf
TRINITY_DN4194_c0_g1:10417	si_s88	TRINITY_DN4194_c0_g1	10405	10426	10417	-34.80	-23.20	0.666666666666667	7	1-10,10426-10417;11-14,10414-10411;16-21,10410-10405	x-x,10416-10415[BULt];15-15,x-x[BULq]	((((((-((((..((((((((((&))))))))))--)))).))))))	GAAGUG-AGAAAUGAAGAAGGGG&UCCUUUCUUC--UUCUUCGCUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4194_c0_g1_10417_TPlot.pdf
TRINITY_DN4194_c0_g1:6578	si_a471	TRINITY_DN4194_c0_g1	6567	6587	6578	-21.10	-14.30	0.677725118483412	8	1-17,6587-6571	18-21,6570-6567[UP3]	....(((((((((((((((((&)))))))))))))))))....	UGGAGAUAAUGGUUAUAUAUU&AAUAUGUAAUUAUUGUUAUAU	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN4194_c0_g1_6578_TPlot.pdf
TRINITY_DN4194_c0_g1:6580	si_a469	TRINITY_DN4194_c0_g1	6569	6589	6580	-21.10	-15.60	0.739336492890995	6.5	2-19,6588-6571	1-1,6589-6589[UP5];20-21,6570-6569[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GAGAUAAUGGUUAUAUAUUAG&AUAAUAUGUAAUUAUUGUUAU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN4194_c0_g1_6580_TPlot.pdf
TRINITY_DN4194_c0_g1:6583	si_a466	TRINITY_DN4194_c0_g1	6572	6592	6583	-21.50	-14.00	0.651162790697674	9.5	5-21,6588-6572	1-4,6592-6589[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUAAUGGUUAUAUAUUAGUGU&UAUAUAAUAUGUAAUUAUUGU	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN4194_c0_g1_6583_TPlot.pdf
TRINITY_DN4194_c0_g1:6650	si_a404	TRINITY_DN4194_c0_g1	6639	6661	6650	-21.70	-15.30	0.705069124423963	7	1-9,6661-6653;10-21,6650-6639	x-x,6652-6651[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	UAAAUAUAAAUAAUGAAUAAUUC&GAAUUGUUU--UGUUUAUAUUUA	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4194_c0_g1_6650_TPlot.pdf
TRINITY_DN4197_c0_g1:3029	si_s709	TRINITY_DN4197_c0_g1	3018	3038	3029	-32.00	-23.50	0.734375	5	2-4,3037-3035;6-17,3033-3022;19-21,3020-3018	1-1,3038-3038[UP5];5-5,3034-3034[SIL];18-18,3021-3021[SIL]	(((.((((((((((((.(((.&.))).)))))))))))).)))	AUCCUUCCCUGUUCACCGAUU&UAUUAGUGAACAGGGAAAGAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s709_TRINITY_DN4197_c0_g1_3029_TPlot.pdf
TRINITY_DN4197_c0_g1:497	si_a68	TRINITY_DN4197_c0_g1	486	506	497	-25.40	-16.58	0.652755905511811	5.5	2-14,505-493;18-21,489-486	1-1,506-506[UP5];15-17,492-490[SIL]	((((...(((((((((((((.&.)))))))))))))...))))	UGAGUCCCAAUUUGAAAGAGA&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4197_c0_g1_497_TPlot.pdf
TRINITY_DN4197_c0_g1:683	si_s899	TRINITY_DN4197_c0_g1	672	693	683	-28.30	-18.70	0.660777385159011	10	1-6,693-688;7-11,686-682;14-20,679-673	x-x,687-687[BULt];12-13,681-680[SIL];21-21,672-672[UP3]	.(((((((..(((((.((((((&))))))-)))))..))))))).	CGUUGGAAGAGAGGGUGAAGGC&GCUUUC-UCUUCAAUUUCAAUU	4	0.999999999710675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4197_c0_g1_683_TPlot.pdf
TRINITY_DN4198_c0_g1:2341	si_a570	TRINITY_DN4198_c0_g1	2329	2350	2341	-31.90	-21.60	0.677115987460815	7	1-14,2350-2337;15-18,2335-2332	x-x,2336-2336[BULt];19-21,2331-2329[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	CUCUAAGUCAUGCGAUUUACGG&CCGUGAAUCGUAUG-UUUGUAA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN4198_c0_g1_2341_TPlot.pdf
TRINITY_DN4198_c0_g1:876	si_a837	TRINITY_DN4198_c0_g1	865	885	876	-25.80	-17.20	0.666666666666667	15.5	8-20,878-866	1-7,885-879[UP5];21-21,865-865[UP3]	.(((((((((((((.......&.......))))))))))))).	AUUAGCAGCUUCUGAGAAGUC&AAAAAAAUAGAAGUUGCUAAC	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN4198_c0_g1_876_TPlot.pdf
TRINITY_DN4199_c0_g1:2473	si_a302	TRINITY_DN4199_c0_g1	2462	2482	2473	-28.20	-22.70	0.804964539007092	11	5-20,2478-2463	1-4,2482-2479[UP5];21-21,2462-2462[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAGUCCAAGCGGAUUUGCCG&AAAAAGAUUCGCUUGGAUUUA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN4199_c0_g1_2473_TPlot.pdf
TRINITY_DN4199_c0_g1:2476	si_a299	TRINITY_DN4199_c0_g1	2465	2485	2476	-28.30	-20.30	0.717314487632509	15.5	8-21,2478-2465	1-7,2485-2479[UP5]	((((((((((((((.......&.......))))))))))))))	GUCCAAGCGGAUUUGCCGCAU&UUAAAAAAGAUUCGCUUGGAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN4199_c0_g1_2476_TPlot.pdf
TRINITY_DN4199_c0_g1:2519	si_s82	TRINITY_DN4199_c0_g1	2508	2528	2519	-28.90	-19.40	0.671280276816609	10	1-9,2528-2520;11-17,2518-2512	10-10,2519-2519[SIL];18-21,2511-2508[UP3]	....(((((((.(((((((((&))))))))).)))))))....	GAUUGGAGGAGCGGAGAGAGA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4199_c0_g1_2519_TPlot.pdf
TRINITY_DN419_c0_g1:14418	si_a440	TRINITY_DN419_c0_g1	14407	14427	14418	-30.80	-20.68	0.671428571428571	6.5	1-14,14427-14414;18-21,14410-14407	15-17,14413-14411[SIL]	((((...((((((((((((((&))))))))))))))...))))	ACAGAUUUCUCAUAUUCGGCG&CGUUGGAUAUGAGAUAAUUGU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN419_c0_g1_14418_TPlot.pdf
TRINITY_DN419_c11_g1:450	si_a408	TRINITY_DN419_c11_g1	439	459	450	-20.10	-14.70	0.731343283582089	6	2-11,458-449;14-21,446-439	1-1,459-459[UP5];12-13,448-447[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	UAUUUAAAGUUGAAUAAAACU&UGUUUUGUUUAUAUUUAAAUA	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN419_c11_g1_450_TPlot.pdf
TRINITY_DN41_c0_g3:2466	si_a553	TRINITY_DN41_c0_g3	2455	2477	2466	-33.70	-24.20	0.718100890207715	9.5	1-5,2477-2473;6-11,2470-2465;13-21,2463-2455	x-x,2472-2471[BULt];12-12,2464-2464[SIL]	(((((((((.((((((..(((((&)))))--)))))).)))))))))	AUGGGGAGAAGAGGAGCUAUAGA&UCUAU--UUCUUUAUCUCCCCGU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN41_c0_g3_2466_TPlot.pdf
TRINITY_DN41_c0_g3:744	si_a351	TRINITY_DN41_c0_g3	733	753	744	-20.50	-13.70	0.668292682926829	12	5-10,749-744;12-21,742-733	1-4,753-750[UP5];11-11,743-743[SIL]	((((((((((.((((((....&....)))))).))))))))))	GUCGAAAUAGUGUUGAUUUAC&AAAUAUUAAUUCUAUUUUGAU	3	0.999992358580222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN41_c0_g3_744_TPlot.pdf
TRINITY_DN4200_c0_g1:1583	si_a305	TRINITY_DN4200_c0_g1	1572	1592	1583	-32.80	-21.80	0.664634146341463	12.5	7-20,1586-1573	1-6,1592-1587[UP5];21-21,1572-1572[UP3]	.((((((((((((((......&......)))))))))))))).	UGAUAGAUCCAAGCGUAGACG&AAGAUUCGCUUGGAUUUAUCC	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN4200_c0_g1_1583_TPlot.pdf
TRINITY_DN4200_c0_g1:2438	si_a23	TRINITY_DN4200_c0_g1	2427	2447	2438	-22.80	-15.00	0.657894736842105	17.5	10-21,2438-2427	1-9,2447-2439[UP5]	((((((((((((.........&.........))))))))))))	UCUUAGAGCUAAUACUCUAUC&UAUUUAUUUUUAGUUCUAAGA	2	0.999923938277612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN4200_c0_g1_2438_TPlot.pdf
TRINITY_DN4201_c0_g1:247	si_s97	TRINITY_DN4201_c0_g1	237	256	247	-36.30	-25.80	0.710743801652893	4	1-13,256-244;16-21,242-237	14-15,243-243[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	UUUCAGA-CGAGGCGAAGAAG&CUUCUUCGCUUCGGAUUGGAA	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN4201_c0_g1_247_TPlot.pdf
TRINITY_DN4201_c0_g1:248	si_s96	TRINITY_DN4201_c0_g1	238	257	248	-37.20	-26.30	0.706989247311828	4	1-14,257-244;17-21,242-238	15-16,243-243[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UUCAGA-CGAGGCGAAGAAGA&UCUUCUUCGCUUCGGAUUGGA	2	0.827076674066767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN4201_c0_g1_248_TPlot.pdf
TRINITY_DN4201_c0_g1:252	si_s92	TRINITY_DN4201_c0_g1	241	262	252	-34.90	-24.90	0.713467048710602	7.5	2-4,261-259;5-18,257-244	1-1,262-262[UP5];x-x,258-258[BULt];19-21,243-241[UP3]	...((((((((((((((.(((.&.)))-))))))))))))))...	AGACGAGGCGAAGAAGACAGGC&UUCU-UCUUCUUCGCUUCGGAU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4201_c0_g1_252_TPlot.pdf
TRINITY_DN4201_c0_g1:253	si_s91	TRINITY_DN4201_c0_g1	242	263	253	-34.70	-24.90	0.717579250720461	8.5	3-5,261-259;6-19,257-244	1-2,263-262[UP5];x-x,258-258[BULt];20-21,243-242[UP3]	..((((((((((((((.(((..&..)))-))))))))))))))..	GACGAGGCGAAGAAGACAGGCG&UUUCU-UCUUCUUCGCUUCGGA	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4201_c0_g1_253_TPlot.pdf
TRINITY_DN4201_c0_g1:254	si_s90	TRINITY_DN4201_c0_g1	243	264	254	-35.30	-24.90	0.705382436260623	9.5	4-6,261-259;7-20,257-244	1-3,264-262[UP5];x-x,258-258[BULt];21-21,243-243[UP3]	.((((((((((((((.(((...&...)))-)))))))))))))).	ACGAGGCGAAGAAGACAGGCGU&CUUUCU-UCUUCUUCGCUUCGG	3	0.999996864296552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4201_c0_g1_254_TPlot.pdf
TRINITY_DN4201_c0_g1:255	si_s89	TRINITY_DN4201_c0_g1	244	265	255	-35.30	-24.40	0.691218130311615	10.5	5-7,261-259;8-21,257-244	1-4,265-262[UP5];x-x,258-258[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	CGAGGCGAAGAAGACAGGCGUA&CCUUUCU-UCUUCUUCGCUUCG	3	0.999999989599644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4201_c0_g1_255_TPlot.pdf
TRINITY_DN4202_c0_g1:347	si_s552	TRINITY_DN4202_c0_g1	335	356	347	-21.10	-15.40	0.729857819905213	9	1-10,356-347;13-20,343-336	11-12,346-344[AILt];21-21,335-335[UP3]	.((((((((...((((((((((&))))))))))-..)))))))).	GGAAAAUAUGUUGUUCUGUUUU&AAAAUAGAAU-UAAUAUUUUCG	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN4202_c0_g1_347_TPlot.pdf
TRINITY_DN4203_c1_g2:170	si_a487	TRINITY_DN4203_c1_g2	158	179	170	-24.80	-16.90	0.681451612903226	6.5	1-13,179-167;15-15,165-165;16-20,163-159	14-14,166-166[SIL];x-x,164-164[BULt];21-21,158-158[UP3]	.(((((.(.(((((((((((((&))))))))))))).)-))))).	CAAAGCUGUCGUAUUCUGUGUA&UAUAUAGAAUAUGUC-GUUUUU	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN4203_c1_g2_170_TPlot.pdf
TRINITY_DN42057_c0_g1:25	si_s69	TRINITY_DN42057_c0_g1	15	34	25	-23.40	-16.60	0.70940170940171	10.5	3-11,32-24;14-21,22-15	1-2,34-33[UP5];12-13,23-23[AILq]	((((((((.-(((((((((..&..)))))))))..))))))))	GAAGGAAAU-GGGUGGAAGGA&AACUUCUAUUUUUUUUCUUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN42057_c0_g1_25_TPlot.pdf
TRINITY_DN42057_c0_g1:28	si_s81	TRINITY_DN42057_c0_g1	11	37	28	-28.90	-22.50	0.778546712802768	14.5	1-10,37-28;11-21,21-11	x-x,27-22[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	AGAAGAAGGAAAUGGGUGGAAGGAAGA&UUUUCUUUCC------UUUCUUCUUCU	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN42057_c0_g1_28_TPlot.pdf
TRINITY_DN42057_c0_g1:29	si_s80	TRINITY_DN42057_c0_g1	12	38	29	-28.20	-22.20	0.787234042553192	14.5	1-11,38-28;12-21,21-12	x-x,27-22[BULt]	((((((((((......(((((((((((&)))))))))))------))))))))))	GAAGAAGGAAAUGGGUGGAAGGAAGAA&UUUUUCUUUCC------UUUCUUCUUC	4	0.999970907602407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN42057_c0_g1_29_TPlot.pdf
TRINITY_DN42057_c0_g1:30	si_s79	TRINITY_DN42057_c0_g1	13	39	30	-26.20	-19.40	0.740458015267176	15	1-12,39-28;13-21,21-13	x-x,27-22[BULt]	(((((((((......((((((((((((&))))))))))))------)))))))))	AAGAAGGAAAUGGGUGGAAGGAAGAAG&UUUUUUCUUUCC------UUUCUUCUU	4	0.99999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN42057_c0_g1_30_TPlot.pdf
TRINITY_DN42057_c0_g1:71	si_a802	TRINITY_DN42057_c0_g1	60	80	71	-34.70	-23.20	0.668587896253602	8	3-6,78-75;8-17,73-64;19-20,62-61	1-2,80-79[UP5];7-7,74-74[SIL];18-18,63-63[SIL];21-21,60-60[UP3]	.((.((((((((((.((((..&..)))).)))))))))).)).	AUCGUCGCUUUGGAAUGGAUU&UUUCCAAUCCGAAGCGAAGAA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN42057_c0_g1_71_TPlot.pdf
TRINITY_DN4205_c0_g1:1924	si_s72	TRINITY_DN4205_c0_g1	1912	1933	1924	-24.10	-16.60	0.688796680497925	5.5	1-4,1933-1930;6-18,1928-1916;19-21,1914-1912	5-5,1929-1929[SIL];x-x,1915-1915[BULt]	(((.(((((((((((((.((((&)))).)))))))))))))-)))	AAGAGAAGGAGAAAAAAGAGGA&UUCUAUUUUUUUUCUUUC-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4205_c0_g1_1924_TPlot.pdf
TRINITY_DN4205_c0_g1:1927	si_s69	TRINITY_DN4205_c0_g1	1916	1937	1927	-23.40	-19.00	0.811965811965812	7	2-7,1936-1931;9-21,1928-1916	1-1,1937-1937[UP5];8-8,1930-1929[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	GAAGGAGAAAAAAGAGGAAGUC&AACUUCU-AUUUUUUUUCUUUC	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4205_c0_g1_1927_TPlot.pdf
TRINITY_DN4205_c0_g1:2093	si_s810	TRINITY_DN4205_c0_g1	2082	2103	2093	-27.90	-18.20	0.652329749103943	11.5	1-6,2103-2098;9-17,2094-2086	7-8,2097-2095[AILt];18-21,2085-2082[UP3]	....(((((((((...((((((&))))))-..)))))))))....	AAACGAGAAAAGGAUCGCGAAG&CUUCGU-UACCUUUUCUUAAUA	4	0.99999999994891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN4205_c0_g1_2093_TPlot.pdf
TRINITY_DN42061_c0_g1:132	si_a363	TRINITY_DN42061_c0_g1	121	141	132	-26.40	-18.50	0.700757575757576	8	1-12,141-130;15-17,127-125	13-14,129-128[SIL];18-21,124-121[UP3]	....(((..((((((((((((&))))))))))))..)))....	CUUGUUGUGCCGGUCAAGAUA&UAUUUUGAUCGGAUCAAAAAU	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN42061_c0_g1_132_TPlot.pdf
TRINITY_DN42061_c0_g1:44	si_a123	TRINITY_DN42061_c0_g1	34	54	44	-26.60	-17.70	0.665413533834586	9.5	1-7,54-48;8-14,46-40;16-19,39-36	x-x,47-47[BULt];15-15,x-x[BULq];20-21,35-34[UP3]	..((((-(((((((.(((((((&)))))))-))))))).))))..	CCGCUA-UGCUAUGUGAGCAGG&CUUGUUU-UAUAGCAAUAGUAA	0	0.152189402724941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN42061_c0_g1_44_TPlot.pdf
TRINITY_DN42064_c0_g1:245	si_a675	TRINITY_DN42064_c0_g1	235	254	245	-34.00	-23.90	0.702941176470588	6.5	1-11,254-244;15-21,241-235	12-14,243-242[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	AGACCGCAC-AAUGAGGAGUC&GAUUCCUUAUUCACGCGGUUU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN42064_c0_g1_245_TPlot.pdf
TRINITY_DN42064_c0_g1:246	si_a674	TRINITY_DN42064_c0_g1	236	255	246	-34.70	-23.20	0.668587896253602	6.5	2-12,254-244;16-21,241-236	1-1,255-255[UP5];13-15,243-242[AILq]	((((((..-(((((((((((.&.)))))))))))...))))))	GACCGCAC-AAUGAGGAGUCG&UGAUUCCUUAUUCACGCGGUU	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN42064_c0_g1_246_TPlot.pdf
TRINITY_DN4206_c0_g1:1233	si_a784	TRINITY_DN4206_c0_g1	1222	1242	1233	-24.70	-16.50	0.668016194331984	9	2-10,1241-1233;12-17,1231-1226	1-1,1242-1242[UP5];11-11,1232-1232[SIL];18-21,1225-1222[UP3]	....((((((.(((((((((.&.))))))))).))))))....	UACCUAGGGAUAUAGAAGGGG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4206_c0_g1_1233_TPlot.pdf
TRINITY_DN4206_c0_g1:1234	si_s509	TRINITY_DN4206_c0_g1	1223	1243	1234	-22.80	-15.20	0.666666666666667	11	3-3,1241-1241;6-18,1238-1226	1-2,1243-1242[UP5];4-5,1240-1239[SIL];19-21,1225-1223[UP3]	...(((((((((((((..(..&..)..)))))))))))))...	ACCUAGGGAUAUAGAAGGGGG&AACAAUUCUAUAUUCUUAAUU	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN4206_c0_g1_1234_TPlot.pdf
TRINITY_DN4206_c0_g1:1509	si_a418	TRINITY_DN4206_c0_g1	1497	1518	1509	-21.20	-14.00	0.660377358490566	9.5	2-11,1517-1508;14-21,1504-1497	1-1,1518-1518[UP5];12-13,1507-1505[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	AUCCUGUACAGUGUUUAGAUGA&AUAUUUAAAUA-AAUAUAGGAU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN4206_c0_g1_1509_TPlot.pdf
TRINITY_DN4206_c0_g1:157	si_a546	TRINITY_DN4206_c0_g1	143	166	157	-28.60	-20.42	0.713986013986014	6	1-14,166-153;17-21,147-143	15-16,152-148[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN4206_c0_g1_157_TPlot.pdf
TRINITY_DN4207_c0_g1:1025	si_s798	TRINITY_DN4207_c0_g1	1014	1035	1025	-29.30	-20.50	0.699658703071672	8	1-6,1035-1030;7-20,1028-1015	x-x,1029-1029[BULt];21-21,1014-1014[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	AUAACGAAGGUAGGAUUAUGGG&CUCGUA-UUUUAUCUUCGUUAC	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4207_c0_g1_1025_TPlot.pdf
TRINITY_DN4207_c0_g1:1114	si_s81	TRINITY_DN4207_c0_g1	1103	1123	1114	-28.90	-20.10	0.695501730103806	6.5	1-13,1123-1111;15-19,1109-1105	14-14,1110-1110[SIL];20-21,1104-1103[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AAGAGAAUAGAGGAGAGAGAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4207_c0_g1_1114_TPlot.pdf
TRINITY_DN4207_c0_g1:1116	si_s79	TRINITY_DN4207_c0_g1	1105	1125	1116	-26.20	-21.50	0.820610687022901	4	1-15,1125-1111;17-21,1109-1105	16-16,1110-1110[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GAGAAUAGAGGAGAGAGAAAA&UUUUUUCUUUCCUUUCUUCUU	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4207_c0_g1_1116_TPlot.pdf
TRINITY_DN4207_c0_g1:1119	si_s76	TRINITY_DN4207_c0_g1	1105	1128	1119	-23.60	-17.80	0.754237288135593	11	4-17,1125-1112;18-21,1108-1105	1-3,1128-1126[UP5];x-x,1111-1109[BULt]	((((...((((((((((((((...&...))))))))))))))---))))	GAGAAUAGAGGAGAGAGAAAACGU&AUUUUUUUUCUUUCCUU---UCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4207_c0_g1_1119_TPlot.pdf
TRINITY_DN4207_c0_g1:1120	si_s75	TRINITY_DN4207_c0_g1	1109	1129	1120	-24.00	-17.70	0.7375	7	1-3,1129-1127;5-19,1125-1111	4-4,1126-1126[SIL];20-21,1110-1109[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AUAGAGGAGAGAGAAAACGUA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999999821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4207_c0_g1_1120_TPlot.pdf
TRINITY_DN4207_c0_g1:1121	si_s74	TRINITY_DN4207_c0_g1	1110	1130	1121	-25.00	-17.90	0.716	7	2-4,1129-1127;6-20,1125-1111	1-1,1130-1130[UP5];5-5,1126-1126[SIL];21-21,1110-1110[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	UAGAGGAGAGAGAAAACGUAA&CUAUUUUUUUUCUUUCCUUUC	2	0.999999783592257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4207_c0_g1_1121_TPlot.pdf
TRINITY_DN4207_c0_g1:1122	si_s73	TRINITY_DN4207_c0_g1	1111	1131	1122	-24.00	-17.90	0.745833333333333	8	3-5,1129-1127;7-21,1125-1111	1-2,1131-1130[UP5];6-6,1126-1126[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AGAGGAGAGAGAAAACGUAAU&UCUAUUUUUUUUCUUUCCUUU	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4207_c0_g1_1122_TPlot.pdf
TRINITY_DN4207_c0_g1:1123	si_s72	TRINITY_DN4207_c0_g1	1112	1132	1123	-24.10	-17.30	0.717842323651452	10	4-6,1129-1127;8-21,1125-1112	1-3,1132-1130[UP5];7-7,1126-1126[SIL]	((((((((((((((.(((...&...))).))))))))))))))	GAGGAGAGAGAAAACGUAAUU&UUCUAUUUUUUUUCUUUCCUU	2	0.99999999718923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4207_c0_g1_1123_TPlot.pdf
TRINITY_DN4207_c0_g1:1227	si_s75	TRINITY_DN4207_c0_g1	1216	1236	1227	-24.00	-15.70	0.654166666666667	12.5	5-11,1232-1226;13-20,1224-1217	1-4,1236-1233[UP5];12-12,1225-1225[SIL];21-21,1216-1216[UP3]	.((((((((.(((((((....&....))))))).)))))))).	CGAAAGGAGUGAAGAAGCGUU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4207_c0_g1_1227_TPlot.pdf
TRINITY_DN4207_c0_g1:1270	si_a482	TRINITY_DN4207_c0_g1	1258	1279	1270	-26.70	-17.90	0.670411985018727	8	1-7,1279-1273;10-15,1270-1265;16-21,1263-1258	8-9,1272-1271[SIL];x-x,1264-1264[BULt]	((((((.((((((..(((((((&)))))))..))))))-))))))	CGAUAUCGUUCUAGUUGACGAU&AUUGUUAUAUAGAAU-AUGUCG	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN4207_c0_g1_1270_TPlot.pdf
TRINITY_DN4207_c0_g1:907	si_a697	TRINITY_DN4207_c0_g1	897	919	907	-35.50	-23.30	0.656338028169014	9.5	1-6,919-914;7-15,910-902;17-20,901-898	x-x,913-911[BULt];16-16,x-x[BULq];21-21,897-897[UP3]	.((((-(((((((((...((((((&))))))---))))))))).)))).	CGGAG-GUGCCAGUUUUAGUGUUU&GAACAC---AACUGGUACAUUCCA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN4207_c0_g1_907_TPlot.pdf
TRINITY_DN42088_c0_g1:320	si_s806	TRINITY_DN42088_c0_g1	309	329	320	-28.60	-22.50	0.786713286713287	8	1-10,329-320;12-20,318-310	11-11,319-319[SIL];21-21,309-309[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	UGGAGGAGGUCACGGAGGUGG&UUAUCUUCGUUACCUUUUCUU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN42088_c0_g1_320_TPlot.pdf
TRINITY_DN4208_c0_g1:2898	si_s851	TRINITY_DN4208_c0_g1	2885	2907	2898	-42.20	-27.50	0.651658767772512	8.5	1-3,2907-2905;4-8,2903-2899;10-12,2898-2896;13-21,2893-2885	x-x,2904-2904[BULt];9-9,x-x[BULq];x-x,2895-2894[BULt]	(((((((((..(((-(((((.(((&)))-))))).)))--)))))))))	GGGUCUAGGCAAGU-GACUCAGCU&AGC-GAGUCGACU--CCUAGACCU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s851_TRINITY_DN4208_c0_g1_2898_TPlot.pdf
TRINITY_DN4208_c0_g1:3141	si_s628	TRINITY_DN4208_c0_g1	3130	3150	3141	-35.40	-24.80	0.700564971751413	4.5	1-10,3150-3141;12-16,3140-3136;17-21,3134-3130	11-11,x-x[BULq];x-x,3135-3135[BULt]	(((((.(((((-((((((((((&)))))))))).)))))-)))))	GAACGAUCUGC-AAAAGAUCGC&GCGAUCUUUUCGUAGG-CGUUU	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN4208_c0_g1_3141_TPlot.pdf
TRINITY_DN4208_c0_g1:6188	si_a356	TRINITY_DN4208_c0_g1	6177	6197	6188	-26.90	-19.80	0.736059479553903	10.5	4-13,6194-6185;15-19,6183-6179	1-3,6197-6195[UP5];14-14,6184-6184[SIL];20-21,6178-6177[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	CGCCGAUGGAGAUAGAGUGCA&UUAAUUCUAUUUUGAUCGGAU	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN4208_c0_g1_6188_TPlot.pdf
TRINITY_DN4208_c0_g1:6190	si_a354	TRINITY_DN4208_c0_g1	6179	6199	6190	-26.20	-19.60	0.748091603053435	12	6-15,6194-6185;17-21,6183-6179	1-5,6199-6195[UP5];16-16,6184-6184[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	CCGAUGGAGAUAGAGUGCAGC&UAUUAAUUCUAUUUUGAUCGG	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN4208_c0_g1_6190_TPlot.pdf
TRINITY_DN4208_c0_g1:7604	si_a756	TRINITY_DN4208_c0_g1	7590	7613	7604	-33.10	-22.34	0.674924471299094	9.5	2-13,7612-7601;15-19,7596-7592	1-1,7613-7613[UP5];14-14,7600-7597[AILt];20-21,7591-7590[UP3]	..(((((....((((((((((((.&.))))))))))))---.)))))..	AACAAAGCUGCCCCAGAGGGGGUC&AACCUCCUUUGGG---UUUUUGAU	2	0.999791553335487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4208_c0_g1_7604_TPlot.pdf
TRINITY_DN4208_c0_g1:7615	si_s743	TRINITY_DN4208_c0_g1	7604	7624	7615	-29.00	-19.80	0.682758620689655	11	1-4,7624-7621;7-17,7618-7608	5-6,7620-7619[SIL];18-21,7607-7604[UP3]	....(((((((((((..((((&))))..)))))))))))....	AGAGGGGGUCGAUCUUGUUAC&GUGAAUAGAUUGACCUUAAAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN4208_c0_g1_7615_TPlot.pdf
TRINITY_DN4208_c0_g1:788	si_s644	TRINITY_DN4208_c0_g1	780	797	788	-37.20	-25.10	0.674731182795699	7	1-12,797-786;16-20,785-781	13-15,x-x[BULq];21-21,780-780[UP3]	.(((((---((((((((((((&))))))))))))...))))).	GGAUUG---CGGGGGCGGACG&CGUUUGCCCUCGAUACAAUCG	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s644_TRINITY_DN4208_c0_g1_788_TPlot.pdf
TRINITY_DN42096_c0_g1:223	si_a65	TRINITY_DN42096_c0_g1	210	232	223	-27.70	-18.28	0.659927797833935	10.5	2-11,231-222;14-21,217-210	1-1,232-232[UP5];12-13,221-218[AILt]	((((((((....((((((((((.&.))))))))))--..))))))))	GGGACAAUAGGAGGAAGAAGCGU&UCGCUUCUUUC--AAAUUGUUUU	4	0.999999999484294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN42096_c0_g1_223_TPlot.pdf
TRINITY_DN4211_c0_g1:270	si_a553	TRINITY_DN4211_c0_g1	260	277	270	-33.70	-24.50	0.72700296735905	6.5	1-8,277-270;12-21,269-260	9-11,x-x[BULq]	((((((((((---((((((((&))))))))...))))))))))	AUGGGGAGAU---GAAAUAGA&UCUAUUUCUUUAUCUCCCCGU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN4211_c0_g1_270_TPlot.pdf
TRINITY_DN4211_c0_g1:491	si_a66	TRINITY_DN4211_c0_g1	481	500	491	-26.70	-17.90	0.670411985018727	7.5	1-10,500-491;14-21,488-481	11-13,490-489[AILq]	((((((((..-((((((((((&))))))))))...))))))))	GAAAACGGAG-GAAAGAAGUG&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999990747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4211_c0_g1_491_TPlot.pdf
TRINITY_DN4213_c0_g1:757	si_s897	TRINITY_DN4213_c0_g1	747	765	757	-31.30	-20.70	0.661341853035144	7.5	1-8,765-758;10-14,757-753;16-19,752-749	9-9,x-x[BULq];15-15,x-x[BULq];20-21,748-747[UP3]	..((((-(((((-((((((((&)))))))).))))).))))..	UAGAGA-UGAAG-GAGGGCCU&AGGCUUUCUCUUCAAUUUCAA	4	0.999999626583502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN4213_c0_g1_757_TPlot.pdf
TRINITY_DN4213_c0_g1:758	si_s895	TRINITY_DN4213_c0_g1	749	767	758	-31.10	-22.60	0.726688102893891	6.5	1-10,767-758;12-16,757-753;18-21,752-749	11-11,x-x[BULq];17-17,x-x[BULq]	((((-(((((-((((((((((&)))))))))).))))).))))	GAGA-UGAAG-GAGGGCCUGU&AUAGGCUUUCUCUUCAAUUUC	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4213_c0_g1_758_TPlot.pdf
TRINITY_DN4213_c0_g1:760	si_s893	TRINITY_DN4213_c0_g1	750	769	760	-29.10	-20.50	0.70446735395189	10	3-12,767-758;14-18,757-753	1-2,769-768[UP5];13-13,x-x[BULq];19-21,752-750[UP3]	...(((((-((((((((((..&..)))))))))).)))))...	AGAUGAAG-GAGGGCCUGUAA&AAAUAGGCUUUCUCUUCAAUU	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4213_c0_g1_760_TPlot.pdf
TRINITY_DN4213_c0_g1:762	si_s891	TRINITY_DN4213_c0_g1	752	771	762	-29.60	-20.50	0.692567567567568	12	5-14,767-758;16-20,757-753	1-4,771-768[UP5];15-15,x-x[BULq];21-21,752-752[UP3]	.(((((-((((((((((....&....)))))))))).))))).	AUGAAG-GAGGGCCUGUAACU&AUAAAUAGGCUUUCUCUUCAA	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4213_c0_g1_762_TPlot.pdf
TRINITY_DN4213_c0_g1:764	si_s889	TRINITY_DN4213_c0_g1	754	773	764	-28.80	-18.90	0.65625	14	7-16,767-758;18-21,757-754	1-6,773-768[UP5];17-17,x-x[BULq]	((((-((((((((((......&......)))))))))).))))	GAAG-GAGGGCCUGUAACUAU&AAAUAAAUAGGCUUUCUCUUC	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN4213_c0_g1_764_TPlot.pdf
TRINITY_DN4213_c0_g1:869	si_s538	TRINITY_DN4213_c0_g1	858	878	869	-28.00	-18.50	0.660714285714286	4.5	1-16,878-863;18-21,861-858	17-17,862-862[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UUAUAUUGAUUGGAUUGAAAA&UUUUUGAUCCGAUCAAAAUAG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN4213_c0_g1_869_TPlot.pdf
TRINITY_DN4213_c0_g1:870	si_s537	TRINITY_DN4213_c0_g1	859	879	870	-26.40	-17.90	0.678030303030303	5	2-17,878-863;19-21,861-859	1-1,879-879[UP5];18-18,862-862[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	UAUAUUGAUUGGAUUGAAAAA&AUUUUUGAUCCGAUCAAAAUA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN4213_c0_g1_870_TPlot.pdf
TRINITY_DN4214_c1_g1:562	si_a788	TRINITY_DN4214_c1_g1	551	571	562	-24.80	-18.20	0.733870967741935	6.5	1-5,571-567;7-13,565-559;15-19,557-553	6-6,566-566[SIL];14-14,558-558[SIL];20-21,552-551[UP3]	..(((((.(((((((.(((((&))))).))))))).)))))..	GAGGAGAUUAGAAGAUUAGAA&UUCUAUUUUUCUAUUUUCCAA	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4214_c1_g1_562_TPlot.pdf
TRINITY_DN4214_c1_g1:563	si_a787	TRINITY_DN4214_c1_g1	552	572	563	-26.30	-18.40	0.699619771863118	6.5	2-6,571-567;8-14,565-559;16-20,557-553	1-1,572-572[UP5];7-7,566-566[SIL];15-15,558-558[SIL];21-21,552-552[UP3]	.(((((.(((((((.(((((.&.))))).))))))).))))).	AGGAGAUUAGAAGAUUAGAAA&CUUCUAUUUUUCUAUUUUCCA	4	0.999999939286455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4214_c1_g1_563_TPlot.pdf
TRINITY_DN4214_c1_g2:43	si_s388	TRINITY_DN4214_c1_g2	32	54	43	-37.80	-26.48	0.700529100529101	12.5	1-8,54-47;11-20,42-33	9-10,46-43[AILt];21-21,32-32[UP3]	.((((((((((....((((((((&))))))))--..)))))))))).	AUCCUUGGGGUCCUAGGGGCGGA&UCCGCCUU--ACAUUCCAAGGAA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s388_TRINITY_DN4214_c1_g2_43_TPlot.pdf
TRINITY_DN4214_c1_g2:44	si_s387	TRINITY_DN4214_c1_g2	33	55	44	-39.50	-29.38	0.74379746835443	11	1-9,55-47;12-21,42-33	10-11,46-43[AILt]	((((((((((....(((((((((&)))))))))--..))))))))))	UCCUUGGGGUCCUAGGGGCGGAC&GUCCGCCUU--ACAUUCCAAGGA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN4214_c1_g2_44_TPlot.pdf
TRINITY_DN42167_c0_g1:106	si_s92	TRINITY_DN42167_c0_g1	94	115	106	-34.90	-23.90	0.684813753581662	8	3-13,113-103;14-18,101-97	1-2,115-114[UP5];x-x,102-102[BULt];19-21,96-94[UP3]	...(((((.(((((((((((..&..)))))))))))-)))))...	GGACGAAGACGAAGAGGAAGUC&UUCUUCUUCUUCG-CUUCGGAU	2	0.999971897648932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN42167_c0_g1_106_TPlot.pdf
TRINITY_DN42167_c0_g1:185	si_s645	TRINITY_DN42167_c0_g1	174	194	185	-38.10	-24.84	0.651968503937008	7.5	1-12,194-183;18-21,177-174	13-17,182-178[SIL]	((((.....((((((((((((&)))))))))))).....))))	UCGACUCUUUCGAGGGCGAGC&GUUUGCCCUCGAUACAAUCGG	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s645_TRINITY_DN42167_c0_g1_185_TPlot.pdf
TRINITY_DN4218_c0_g1:1500	si_a703	TRINITY_DN4218_c0_g1	1489	1509	1500	-29.20	-20.30	0.695205479452055	10	3-15,1507-1495	1-2,1509-1508[UP5];16-21,1494-1489[UP3]	......(((((((((((((..&..)))))))))))))......	ACGUGCUGGAAUGUACUAGCU&AACUGGUACAUUCCAAAAUAA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN4218_c0_g1_1500_TPlot.pdf
TRINITY_DN4218_c0_g1:1501	si_a702	TRINITY_DN4218_c0_g1	1490	1510	1501	-30.80	-20.30	0.659090909090909	11	4-16,1507-1495	1-3,1510-1508[UP5];17-21,1494-1490[UP3]	.....(((((((((((((...&...))))))))))))).....	CGUGCUGGAAUGUACUAGCUA&CAACUGGUACAUUCCAAAAUA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN4218_c0_g1_1501_TPlot.pdf
TRINITY_DN4218_c0_g1:1502	si_a701	TRINITY_DN4218_c0_g1	1491	1511	1502	-31.20	-20.30	0.650641025641026	12	5-17,1507-1495	1-4,1511-1508[UP5];18-21,1494-1491[UP3]	....(((((((((((((....&....)))))))))))))....	GUGCUGGAAUGUACUAGCUAG&ACAACUGGUACAUUCCAAAAU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN4218_c0_g1_1502_TPlot.pdf
TRINITY_DN4218_c0_g1:1592	si_s73	TRINITY_DN4218_c0_g1	1581	1601	1592	-24.00	-16.88	0.703333333333333	9.5	1-3,1601-1599;7-19,1595-1583	4-6,1598-1596[SIL];20-21,1582-1581[UP3]	..(((((((((((((...(((&)))...)))))))))))))..	CUAGGAAGGAAAAAAUUGGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4218_c0_g1_1592_TPlot.pdf
TRINITY_DN4218_c0_g1:1594	si_s71	TRINITY_DN4218_c0_g1	1583	1603	1594	-25.70	-17.78	0.691828793774319	8.5	2-5,1602-1599;9-21,1595-1583	1-1,1603-1603[UP5];6-8,1598-1596[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	AGGAAGGAAAAAAUUGGGAAU&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4218_c0_g1_1594_TPlot.pdf
TRINITY_DN4218_c0_g1:1671	si_s70	TRINITY_DN4218_c0_g1	1660	1680	1671	-25.80	-18.60	0.72093023255814	7	3-7,1678-1674;9-21,1672-1660	1-2,1680-1679[UP5];8-8,1673-1673[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GGGAAGGAAAAAAUUGGAAUC&ACUUCUAUUUUUUUUCUUUCC	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4218_c0_g1_1671_TPlot.pdf
TRINITY_DN4218_c0_g1:2057	si_a404	TRINITY_DN4218_c0_g1	2046	2066	2057	-21.70	-14.20	0.654377880184332	10.5	1-9,2066-2058;11-18,2056-2049	10-10,2057-2057[SIL];19-21,2048-2046[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UGCAUAUGAAUUGAGCGGUUC&GAAUUGUUUUGUUUAUAUUUA	2	0.999999999998838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4218_c0_g1_2057_TPlot.pdf
TRINITY_DN4218_c0_g1:2058	si_a403	TRINITY_DN4218_c0_g1	2047	2067	2058	-22.00	-15.60	0.709090909090909	9.5	1-10,2067-2058;12-19,2056-2049	11-11,2057-2057[SIL];20-21,2048-2047[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GCAUAUGAAUUGAGCGGUUCU&AGAAUUGUUUUGUUUAUAUUU	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN4218_c0_g1_2058_TPlot.pdf
TRINITY_DN4218_c0_g1:2059	si_a402	TRINITY_DN4218_c0_g1	2048	2068	2059	-22.40	-16.40	0.732142857142857	8.5	1-11,2068-2058;13-20,2056-2049	12-12,2057-2057[SIL];21-21,2048-2048[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	CAUAUGAAUUGAGCGGUUCUG&UAGAAUUGUUUUGUUUAUAUU	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN4218_c0_g1_2059_TPlot.pdf
TRINITY_DN4218_c0_g1:2060	si_a401	TRINITY_DN4218_c0_g1	2049	2069	2060	-22.60	-17.70	0.783185840707964	7	1-12,2069-2058;14-21,2056-2049	13-13,2057-2057[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AUAUGAAUUGAGCGGUUCUGU&AUAGAAUUGUUUUGUUUAUAU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN4218_c0_g1_2060_TPlot.pdf
TRINITY_DN4219_c0_g1:291	si_a409	TRINITY_DN4219_c0_g1	280	300	291	-19.50	-13.50	0.692307692307692	6	1-14,300-287;16-19,285-282	15-15,286-286[SIL];20-21,281-280[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GAAUUUUAAUAUGAAUAAAGC&GUUUUGUUUAUAUUUAAAUAA	2	0.999957093544132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4219_c0_g1_291_TPlot.pdf
TRINITY_DN421_c0_g1:650	si_s206	TRINITY_DN421_c0_g1	639	659	650	-33.00	-22.80	0.690909090909091	7.5	1-5,659-655;7-10,653-650;12-20,648-640	6-6,654-654[SIL];11-11,649-649[SIL];21-21,639-639[UP3]	.(((((((((.((((.(((((&))))).)))).))))))))).	AUCGAACGCGUCUGGCACGUU&AAUGUACCAGUUGUGUUCGAA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN421_c0_g1_650_TPlot.pdf
TRINITY_DN4220_c0_g1:317	si_s13	TRINITY_DN4220_c0_g1	307	326	317	-22.90	-15.20	0.663755458515284	7	2-10,325-317;12-18,316-310;20-21,308-307	1-1,326-326[UP5];11-11,x-x[BULq];19-19,309-309[SIL]	((.(((((((-(((((((((.&.))))))))).))))))).))	CAUUCAAUAU-GUGAUGAUGU&UUAUUAUUACUAUAUUGAUUG	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN4220_c0_g1_317_TPlot.pdf
TRINITY_DN42211_c0_g1:62	si_a125	TRINITY_DN42211_c0_g1	50	71	62	-25.00	-17.90	0.716	5	2-7,70-65;9-14,63-58;15-21,56-50	1-1,71-71[UP5];8-8,64-64[SIL];x-x,57-57[BULt]	(((((((.((((((.((((((.&.)))))).))))))-)))))))	AAUUGCUGGUUGCUUUAAAACG&UGUUUUAUAGCAAU-AGUAAUU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN42211_c0_g1_62_TPlot.pdf
TRINITY_DN42211_c0_g1:63	si_a124	TRINITY_DN42211_c0_g1	51	72	63	-25.10	-18.50	0.737051792828685	5	1-8,72-65;10-15,63-58;16-21,56-51	9-9,64-64[SIL];x-x,57-57[BULt]	((((((.((((((.((((((((&)))))))).))))))-))))))	AUUGCUGGUUGCUUUAAAACGA&UUGUUUUAUAGCAAU-AGUAAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN42211_c0_g1_63_TPlot.pdf
TRINITY_DN42211_c0_g1:64	si_a123	TRINITY_DN42211_c0_g1	52	73	64	-26.60	-17.50	0.657894736842105	6	2-9,72-65;11-16,63-58;17-21,56-52	1-1,73-73[UP5];10-10,64-64[SIL];x-x,57-57[BULt]	(((((.((((((.((((((((.&.)))))))).))))))-)))))	UUGCUGGUUGCUUUAAAACGAA&CUUGUUUUAUAGCAAU-AGUAA	0	0.174374305956985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN42211_c0_g1_64_TPlot.pdf
TRINITY_DN42216_c0_g1:213	si_s362	TRINITY_DN42216_c0_g1	202	221	213	-34.70	-22.60	0.651296829971182	6.5	2-5,220-217;7-17,216-206;19-21,204-202	1-1,221-221[UP5];6-6,x-x[BULq];18-18,205-205[SIL]	(((.(((((((((((-((((.&.)))).))))))))))).)))	GAGGGAUUGGUUUAA-CUGUA&AAUAGAUUGAACCGAUCGCUC	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN42216_c0_g1_213_TPlot.pdf
TRINITY_DN4221_c0_g2:647	si_a233	TRINITY_DN4221_c0_g2	636	656	647	-28.90	-21.00	0.726643598615917	9	4-6,653-651;9-21,648-636	1-3,656-654[UP5];7-8,650-649[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	GGAUCGAAUUGAUAUUAGCAU&UUUCUAUAAUCAAUUCGAUCC	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN4221_c0_g2_647_TPlot.pdf
TRINITY_DN4221_c0_g2:695	si_a414	TRINITY_DN4221_c0_g2	684	704	695	-18.10	-11.80	0.651933701657459	7	2-6,703-699;8-20,697-685	1-1,704-704[UP5];7-7,698-698[SIL];21-21,684-684[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	GGUGUUUAUUUAAAAAUGAGA&GUUUAUAUUUAAAUAAAUAUA	4	0.99999987751274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN4221_c0_g2_695_TPlot.pdf
TRINITY_DN4223_c1_g1:348	si_a228	TRINITY_DN4223_c1_g1	337	357	348	-27.10	-17.70	0.653136531365314	9	2-16,356-342	1-1,357-357[UP5];17-21,341-337[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGGCCGAUUAUGGAGAUAUGC&UCAUGUUUCUAUAAUCAAUUC	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN4223_c1_g1_348_TPlot.pdf
TRINITY_DN4224_c0_g1:2105	si_a149	TRINITY_DN4224_c0_g1	2095	2114	2105	-29.40	-20.50	0.697278911564626	9.5	1-12,2114-2103;15-18,2101-2098	13-14,2102-2102[AILq];19-21,2097-2095[UP3]	...((((.-((((((((((((&))))))))))))..))))...	GGAGGCCG-AGAGCGACGACG&CGUUGUUGUUUUAAGGUCAAU	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN4224_c0_g1_2105_TPlot.pdf
TRINITY_DN4224_c0_g1:2107	si_a147	TRINITY_DN4224_c0_g1	2097	2116	2107	-30.40	-20.50	0.674342105263158	10	3-14,2114-2103;17-20,2101-2098	1-2,2116-2115[UP5];15-16,2102-2102[AILq];21-21,2097-2097[UP3]	.((((.-((((((((((((..&..))))))))))))..)))).	AGGCCG-AGAGCGACGACGCU&AUCGUUGUUGUUUUAAGGUCA	4	0.99994814439953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN4224_c0_g1_2107_TPlot.pdf
TRINITY_DN4224_c0_g1:2132	si_s85	TRINITY_DN4224_c0_g1	2120	2144	2132	-33.80	-22.52	0.666272189349112	13.5	1-6,2144-2139;9-16,2133-2126;17-21,2124-2120	7-8,2138-2134[AILt];x-x,2125-2125[BULt]	(((((.((((((((.....((((((&))))))---..))))))))-)))))	GCGGACGAAGAGGACGCGCGGAAGG&CUUUCC---UUUCUUCUUC-UUCGC	2	0.999999999697115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4224_c0_g1_2132_TPlot.pdf
TRINITY_DN4224_c0_g1:2139	si_a66	TRINITY_DN4224_c0_g1	2129	2148	2139	-26.70	-17.52	0.656179775280899	10	1-10,2148-2139;15-21,2135-2129	11-14,2138-2136[AILq]	(((((((...-((((((((((&))))))))))....)))))))	GAGGACGCGC-GGAAGGAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4224_c0_g1_2139_TPlot.pdf
TRINITY_DN4224_c0_g1:2145	si_s86	TRINITY_DN4224_c0_g1	2134	2156	2145	-32.90	-21.70	0.659574468085106	11.5	2-8,2155-2149;9-16,2146-2139;18-20,2137-2135	1-1,2156-2156[UP5];x-x,2148-2147[BULt];17-17,2138-2138[SIL];21-21,2134-2134[UP3]	.(((.((((((((..(((((((.&.)))))))--)))))))).))).	CGCGCGGAAGGAGCGGGAGGAGG&UUUCCUUU--CUUCUUCUUCGCU	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4224_c0_g1_2145_TPlot.pdf
TRINITY_DN4224_c0_g1:2149	si_s71	TRINITY_DN4224_c0_g1	2138	2158	2149	-25.70	-17.10	0.665369649805448	11	1-5,2158-2154;7-11,2152-2148;13-20,2146-2139	6-6,2153-2153[SIL];12-12,2147-2147[SIL];21-21,2138-2138[UP3]	.((((((((.(((((.(((((&))))).))))).)))))))).	CGGAAGGAGCGGGAGGAGGAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4224_c0_g1_2149_TPlot.pdf
TRINITY_DN4224_c0_g1:2152	si_s77	TRINITY_DN4224_c0_g1	2140	2161	2152	-25.50	-20.70	0.811764705882353	8.5	1-14,2161-2148;15-21,2146-2140	x-x,2147-2147[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GAAGGAGCGGGAGGAGGAGGAG&UUUUUUUUCUUUCC-UUUCUUC	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4224_c0_g1_2152_TPlot.pdf
TRINITY_DN4224_c0_g1:2153	si_s90	TRINITY_DN4224_c0_g1	2141	2162	2153	-35.30	-24.90	0.705382436260623	8	1-14,2162-2149;15-19,2147-2143	x-x,2148-2148[BULt];20-21,2142-2141[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AAGGAGCGGGAGGAGGAGGAGG&CUUUCUUCUUCUUC-GCUUCGG	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4224_c0_g1_2153_TPlot.pdf
TRINITY_DN4224_c0_g1:2154	si_s89	TRINITY_DN4224_c0_g1	2142	2163	2154	-35.30	-25.10	0.711048158640227	8	2-15,2162-2149;16-20,2147-2143	1-1,2163-2163[UP5];x-x,2148-2148[BULt];21-21,2142-2142[UP3]	.(((((.((((((((((((((.&.))))))))))))))-))))).	AGGAGCGGGAGGAGGAGGAGGC&CCUUUCUUCUUCUUC-GCUUCG	3	0.999992511716794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4224_c0_g1_2154_TPlot.pdf
TRINITY_DN4224_c0_g1:2155	si_s88	TRINITY_DN4224_c0_g1	2143	2164	2155	-34.80	-24.70	0.709770114942529	9	3-16,2162-2149;17-21,2147-2143	1-2,2164-2163[UP5];x-x,2148-2148[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GGAGCGGGAGGAGGAGGAGGCG&UCCUUUCUUCUUCUUC-GCUUC	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4224_c0_g1_2155_TPlot.pdf
TRINITY_DN4224_c0_g1:2156	si_s87	TRINITY_DN4224_c0_g1	2144	2165	2156	-32.90	-22.40	0.680851063829787	10.5	4-17,2162-2149;18-21,2147-2144	1-3,2165-2163[UP5];x-x,2148-2148[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	GAGCGGGAGGAGGAGGAGGCGC&UUCCUUUCUUCUUCUUC-GCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4224_c0_g1_2156_TPlot.pdf
TRINITY_DN4224_c0_g1:3348	si_s815	TRINITY_DN4224_c0_g1	3336	3357	3348	-25.00	-16.40	0.656	9.5	1-12,3357-3346;14-18,3343-3339	13-13,3345-3344[AILt];19-21,3338-3336[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	AAAAUUGUGCAGGAGAAGGUGA&UUACCUUUUCUU-AAUAAUGAA	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN4224_c0_g1_3348_TPlot.pdf
TRINITY_DN4225_c0_g1:3827	si_s758	TRINITY_DN4225_c0_g1	3816	3836	3827	-23.50	-15.50	0.659574468085106	10	4-17,3833-3820	1-3,3836-3834[UP5];18-21,3819-3816[UP3]	....((((((((((((((...&...))))))))))))))....	UAUCAGUUGUUGUUGUUUCAU&UUAAAACAACAACGAUUAAUU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN4225_c0_g1_3827_TPlot.pdf
TRINITY_DN4225_c0_g1:3900	si_a818	TRINITY_DN4225_c0_g1	3888	3909	3900	-28.90	-19.70	0.681660899653979	5	2-10,3908-3900;11-20,3898-3889	1-1,3909-3909[UP5];x-x,3899-3899[BULt];21-21,3888-3888[UP3]	.((((((((((.(((((((((.&.)))))))))-)))))))))).	GUUCUUUUUUUAUCUUCUUCUG&AAGAAGAAGA-AAGGAAAGAAA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN4225_c0_g1_3900_TPlot.pdf
TRINITY_DN4225_c0_g1:4025	si_s126	TRINITY_DN4225_c0_g1	4015	4034	4025	-29.20	-21.40	0.732876712328767	3	1-15,4034-4020;17-19,4019-4017	16-16,x-x[BULq];20-21,4016-4015[UP3]	..(((-(((((((((((((((&))))))))))))))).)))..	UCUUG-UUCAACUCUUCUAUU&AAUAGAAGAGUUGAAUCAAUC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN4225_c0_g1_4025_TPlot.pdf
TRINITY_DN4225_c0_g1:4142	si_s408	TRINITY_DN4225_c0_g1	4130	4151	4142	-30.20	-19.70	0.652317880794702	5	1-13,4151-4139;14-18,4137-4133	x-x,4138-4138[BULt];19-21,4132-4130[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	UUUAUAUGUUCGUUUUUCGUUU&AGACGAAAAACGA-CAUAUUCU	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s408_TRINITY_DN4225_c0_g1_4142_TPlot.pdf
TRINITY_DN4225_c0_g1:4143	si_s407	TRINITY_DN4225_c0_g1	4131	4152	4143	-29.50	-19.90	0.674576271186441	5	2-14,4151-4139;15-19,4137-4133	1-1,4152-4152[UP5];x-x,4138-4138[BULt];20-21,4132-4131[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	UUAUAUGUUCGUUUUUCGUUUA&AAGACGAAAAACGA-CAUAUUC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s407_TRINITY_DN4225_c0_g1_4143_TPlot.pdf
TRINITY_DN4225_c0_g1:5134	si_a359	TRINITY_DN4225_c0_g1	5123	5143	5134	-29.20	-22.40	0.767123287671233	7.5	1-7,5143-5137;10-20,5134-5124	8-9,5136-5135[SIL];21-21,5123-5123[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	AUGAUUCGAUCAUUAUAGGGU&AUUCUAUUUUGAUCGGAUCAA	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN4225_c0_g1_5134_TPlot.pdf
TRINITY_DN4225_c0_g1:5136	si_a357	TRINITY_DN4225_c0_g1	5125	5145	5136	-28.80	-21.00	0.729166666666667	9.5	3-9,5143-5137;12-21,5134-5125	1-2,5145-5144[UP5];10-11,5136-5135[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	GAUUCGAUCAUUAUAGGGUAC&UAAUUCUAUUUUGAUCGGAUC	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN4225_c0_g1_5136_TPlot.pdf
TRINITY_DN4230_c0_g1:2809	si_a222	TRINITY_DN4230_c0_g1	2798	2818	2809	-25.20	-19.30	0.765873015873016	6.5	1-10,2818-2809;12-19,2807-2800	11-11,2808-2808[SIL];20-21,2799-2798[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	CGUAUAGAAAGAUGGGUUUGG&UUAAACUCAUGUUUCUAUAAU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN4230_c0_g1_2809_TPlot.pdf
TRINITY_DN4231_c0_g1:218	si_a340	TRINITY_DN4231_c0_g1	207	227	218	-30.20	-20.30	0.672185430463576	14	1-11,227-217	12-21,216-207[UP3]	..........(((((((((((&)))))))))))..........	GCUGAAAGAGUCGGGGCGGGG&CCUUGUCCCGAAAAUAUUAAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a340_TRINITY_DN4231_c0_g1_218_TPlot.pdf
TRINITY_DN4231_c0_g1:222	si_a336	TRINITY_DN4231_c0_g1	211	231	222	-31.20	-20.60	0.66025641025641	15	4-15,228-217	1-3,231-229[UP5];16-21,216-211[UP3]	......((((((((((((...&...))))))))))))......	AAAGAGUCGGGGCGGGGGCAC&UAUUCCUUGUCCCGAAAAUAU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN4231_c0_g1_222_TPlot.pdf
TRINITY_DN4231_c0_g1:23	si_a852	TRINITY_DN4231_c0_g1	11	32	23	-28.80	-20.10	0.697916666666667	7	1-8,32-25;10-14,23-19;15-19,17-13	9-9,24-24[SIL];x-x,18-18[BULt];20-21,12-11[UP3]	..(((((.(((((.((((((((&)))))))).)))))-)))))..	GCAGUUGAGGUUUGAGGUUAGC&GCUAACUUGAAAUC-CAAUUAU	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN4231_c0_g1_23_TPlot.pdf
TRINITY_DN4231_c0_g1:24	si_a851	TRINITY_DN4231_c0_g1	12	33	24	-29.30	-20.20	0.689419795221843	7	2-9,32-25;11-15,23-19;16-20,17-13	1-1,33-33[UP5];10-10,24-24[SIL];x-x,18-18[BULt];21-21,12-12[UP3]	.(((((.(((((.((((((((.&.)))))))).)))))-))))).	CAGUUGAGGUUUGAGGUUAGCG&UGCUAACUUGAAAUC-CAAUUA	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a851_TRINITY_DN4231_c0_g1_24_TPlot.pdf
TRINITY_DN4231_c0_g1:25	si_a850	TRINITY_DN4231_c0_g1	13	34	25	-29.00	-20.10	0.693103448275862	7	2-10,33-25;12-16,23-19;17-21,17-13	1-1,34-34[UP5];11-11,24-24[SIL];x-x,18-18[BULt]	(((((.(((((.(((((((((.&.))))))))).)))))-)))))	AGUUGAGGUUUGAGGUUAGCGC&UUGCUAACUUGAAAUC-CAAUU	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN4231_c0_g1_25_TPlot.pdf
TRINITY_DN4231_c0_g1:361	si_a780	TRINITY_DN4231_c0_g1	350	370	361	-27.30	-18.46	0.676190476190476	6	1-11,370-360;16-20,355-351	12-15,359-356[SIL];21-21,350-350[UP3]	.(((((....(((((((((((&)))))))))))....))))).	CAGAAAUGACGAAGAGUUGAA&UUCAACUCUUCUAUUUUUCUA	4	0.999988269255955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN4231_c0_g1_361_TPlot.pdf
TRINITY_DN4231_c0_g1:365	si_a776	TRINITY_DN4231_c0_g1	352	373	365	-27.10	-17.90	0.660516605166052	5	1-3,373-371;5-15,370-360;16-21,357-352	4-4,x-x[BULq];x-x,359-358[BULt]	((((((..(((((((((((-(((&))).)))))))))))--))))))	GAAAUGACGAAGAGUUGAA-CAA&UUGAUUCAACUCUUC--UAUUUU	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN4231_c0_g1_365_TPlot.pdf
TRINITY_DN4231_c0_g1:590	si_a119	TRINITY_DN4231_c0_g1	578	599	590	-30.30	-20.20	0.666666666666667	6.5	1-7,599-593;10-16,590-584;17-21,582-578	8-9,592-591[SIL];x-x,583-583[BULt]	(((((.(((((((..(((((((&)))))))..)))))))-)))))	UAUUGUUUAUGAAUAAAGCUCG&CGAGCUUGUUUUAUAG-CAAUA	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN4231_c0_g1_590_TPlot.pdf
TRINITY_DN4232_c0_g1:612	si_s68	TRINITY_DN4232_c0_g1	601	622	612	-23.10	-15.12	0.654545454545454	10	1-7,622-616;11-19,611-603	8-10,615-612[AILt];20-21,602-601[UP3]	..(((((((((....(((((((&)))))))-...)))))))))..	GUAGAAAAAAAUACUGAAGUUG&CAACUUC-UAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4232_c0_g1_612_TPlot.pdf
TRINITY_DN4233_c0_g2:2231	si_a146	TRINITY_DN4233_c0_g2	2220	2244	2231	-29.70	-19.40	0.653198653198653	11	2-7,2243-2238;8-20,2233-2221	1-1,2244-2244[UP5];x-x,2237-2234[BULt];21-21,2220-2220[UP3]	.(((((((((((((....((((((.&.))))))----))))))))))))).	UACCUUAAAACAACCAAGAAUGAUA&AAUCGUU----GUUGUUUUAAGGUC	4	0.9999999816632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN4233_c0_g2_2231_TPlot.pdf
TRINITY_DN4233_c0_g2:2252	si_a321	TRINITY_DN4233_c0_g2	2236	2261	2252	-26.70	-19.00	0.711610486891386	8.5	1-14,2261-2248;15-20,2242-2237	x-x,2247-2243[BULt];21-21,2236-2236[UP3]	.((((((.....((((((((((((((&))))))))))))))-----)))))).	AGAAUGAUAAGAGAAAGUCAUGGAUG&UAUCCAUGAUUUUU-----UUAUUCC	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN4233_c0_g2_2252_TPlot.pdf
TRINITY_DN4233_c0_g2:3822	si_a317	TRINITY_DN4233_c0_g2	3811	3831	3822	-24.30	-17.70	0.728395061728395	7	1-10,3831-3822;12-13,3820-3819;16-21,3816-3811	11-11,3821-3821[SIL];14-15,3818-3817[SIL]	((((((..((.((((((((((&)))))))))).))..))))))	UGAGAAUCUCUUGGGUAGAUC&GAUUUAUCCAUGAUUUUUUUA	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN4233_c0_g2_3822_TPlot.pdf
TRINITY_DN4234_c0_g1:21	si_s696	TRINITY_DN4234_c0_g1	9	30	21	-26.30	-17.70	0.673003802281369	8.5	3-6,28-25;8-17,23-14;18-21,12-9	1-2,30-29[UP5];7-7,24-24[SIL];x-x,13-13[BULt]	((((.((((((((((.((((..&..)))).))))))))))-))))	CACUGGAUGGAUCGAGUAGUCC&UAAUUAGUCGAUUUAUU-AGUG	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN4234_c0_g1_21_TPlot.pdf
TRINITY_DN4234_c0_g1:24	si_s693	TRINITY_DN4234_c0_g1	13	37	24	-23.90	-16.20	0.677824267782427	15.5	1-5,37-33;6-9,28-25;11-20,23-14	x-x,32-29[BULt];10-10,24-24[SIL];21-21,13-13[UP3]	.((((((((((.((((....(((((&)))))----)))).)))))))))).	GGAUGGAUCGAGUAGUCCAGUGAGC&GUUUA----AUUAGUCGAUUUAUUA	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN4234_c0_g1_24_TPlot.pdf
TRINITY_DN4234_c0_g1:25	si_s692	TRINITY_DN4234_c0_g1	14	38	25	-24.20	-15.90	0.65702479338843	15.5	2-6,37-33;7-10,28-25;12-21,23-14	1-1,38-38[UP5];x-x,32-29[BULt];11-11,24-24[SIL]	((((((((((.((((....(((((.&.)))))----)))).))))))))))	GAUGGAUCGAGUAGUCCAGUGAGCA&AGUUUA----AUUAGUCGAUUUAUU	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN4234_c0_g1_25_TPlot.pdf
TRINITY_DN4234_c0_g1:4739	si_a20	TRINITY_DN4234_c0_g1	4725	4748	4739	-26.70	-18.64	0.69812734082397	8	1-14,4748-4735;16-20,4730-4726	15-15,4734-4731[AILt];21-21,4725-4725[UP3]	.(((((....((((((((((((((&))))))))))))))---.))))).	AAGAAUGCCAGAAAAUAGAUGGGC&GCCUAUUUAUUUUU---AGUUCUA	2	0.980896339800985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4234_c0_g1_4739_TPlot.pdf
TRINITY_DN4234_c0_g1:4850	si_a67	TRINITY_DN4234_c0_g1	4840	4858	4850	-27.20	-17.86	0.656617647058824	10.5	1-9,4858-4850;15-21,4846-4840	10-14,4849-4847[AILq]	(((((((...--(((((((((&))))))))).....)))))))	GAAGAACUCA--GAAGGAGGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999999999999948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4234_c0_g1_4850_TPlot.pdf
TRINITY_DN4234_c0_g1:57	si_a758	TRINITY_DN4234_c0_g1	46	70	57	-34.00	-22.80	0.670588235294118	12	1-8,70-63;9-14,58-53;17-21,50-46	x-x,62-59[BULt];15-16,52-51[SIL]	(((((..((((((....((((((((&))))))))----))))))..)))))	CGGUCCCAAGCCCGGAUAAAGGAGG&CCUCCUUU----GGGUUUUUGAUUG	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN4234_c0_g1_57_TPlot.pdf
TRINITY_DN4234_c0_g1:633	si_a80	TRINITY_DN4234_c0_g1	622	642	633	-22.10	-15.00	0.678733031674208	8	2-13,641-630;15-18,628-625	1-1,642-642[UP5];14-14,629-629[SIL];19-21,624-622[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	GGGUCUUUAUAAUGGGAGACU&UGUUUUUCAUUAUUAAGAAAA	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN4234_c0_g1_633_TPlot.pdf
TRINITY_DN4235_c0_g1:1803	si_a404	TRINITY_DN4235_c0_g1	1792	1812	1803	-21.70	-14.90	0.686635944700461	8	1-13,1812-1800	14-21,1799-1792[UP3]	........(((((((((((((&)))))))))))))........	AUAGCUUCAACAAAACAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999800465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4235_c0_g1_1803_TPlot.pdf
TRINITY_DN4235_c0_g1:1807	si_a400	TRINITY_DN4235_c0_g1	1796	1816	1807	-22.80	-14.90	0.653508771929825	11	5-17,1812-1800	1-4,1816-1813[UP5];18-21,1799-1796[UP3]	....(((((((((((((....&....)))))))))))))....	CUUCAACAAAACAAUUCGUGU&UAUAGAAUUGUUUUGUUUAUA	4	0.999999999991693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN4235_c0_g1_1807_TPlot.pdf
TRINITY_DN4235_c0_g1:1811	si_a396	TRINITY_DN4235_c0_g1	1800	1819	1811	-24.70	-18.00	0.728744939271255	5	1-7,1819-1813;9-21,1812-1800	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	AACAAAACAAUUC-GUGUUUU&AGAAUAUAGAAUUGUUUUGUU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN4235_c0_g1_1811_TPlot.pdf
TRINITY_DN4235_c0_g1:1906	si_s549	TRINITY_DN4235_c0_g1	1895	1915	1906	-20.50	-15.40	0.751219512195122	9	5-21,1911-1895	1-4,1915-1912[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGUAUUAGUUCUGUUUCUGU&AUCAAAAUAGAAUUAAUAUUU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN4235_c0_g1_1906_TPlot.pdf
TRINITY_DN4235_c0_g1:61	si_a67	TRINITY_DN4235_c0_g1	50	70	61	-27.20	-17.70	0.650735294117647	8.5	2-15,69-56	1-1,70-70[UP5];16-21,55-50[UP3]	......((((((((((((((.&.))))))))))))))......	UUCACUCAGUUUGAGAGAAGA&GCUUCUUUCAAAUUGUUUUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4235_c0_g1_61_TPlot.pdf
TRINITY_DN4236_c0_g1:1121	si_a491	TRINITY_DN4236_c0_g1	1110	1133	1121	-29.90	-20.20	0.675585284280936	10.5	1-8,1133-1126;9-20,1122-1111	x-x,1125-1123[BULt];21-21,1110-1110[UP3]	.((((((((((((...((((((((&))))))))---)))))))))))).	AGCGGGAGGCGAUGGGAUAUUCUA&UAGAAUAU---GUCGUUUUUCGUC	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN4236_c0_g1_1121_TPlot.pdf
TRINITY_DN4236_c0_g1:1126	si_a489	TRINITY_DN4236_c0_g1	1112	1135	1126	-27.70	-18.60	0.671480144404332	12	3-10,1133-1126;11-21,1122-1112	1-2,1135-1134[UP5];x-x,1125-1123[BULt]	(((((((((((...((((((((..&..))))))))---)))))))))))	CGGGAGGCGAUGGGAUAUUCUACA&UAUAGAAUAU---GUCGUUUUUCG	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN4236_c0_g1_1126_TPlot.pdf
TRINITY_DN4236_c0_g1:1140	si_a338	TRINITY_DN4236_c0_g1	1124	1149	1140	-31.10	-20.40	0.655948553054662	15.5	2-12,1148-1138;15-20,1130-1125	1-1,1149-1149[UP5];13-14,1137-1131[AILt];21-21,1124-1124[UP3]	.((((((.......(((((((((((.&.)))))))))))-----..)))))).	GGAUAUUCUACAUGUGGGACAAGGAC&UUCCUUGUCCCG-----AAAAUAUUA	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a338_TRINITY_DN4236_c0_g1_1140_TPlot.pdf
TRINITY_DN4236_c0_g1:1244	si_s213	TRINITY_DN4236_c0_g1	1233	1253	1244	-37.10	-25.20	0.679245283018868	7.5	1-13,1253-1241;16-20,1238-1234	14-15,1240-1239[SIL];21-21,1233-1233[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	UUGCGGCCUCGGAUACGAUUG&CAGUUGUGUUCGAAACCGCGU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s213_TRINITY_DN4236_c0_g1_1244_TPlot.pdf
TRINITY_DN4236_c0_g1:1245	si_s212	TRINITY_DN4236_c0_g1	1234	1254	1245	-38.70	-28.50	0.736434108527132	6.5	1-14,1254-1241;17-21,1238-1234	15-16,1240-1239[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	UGCGGCCUCGGAUACGAUUGG&CCAGUUGUGUUCGAAACCGCG	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN4236_c0_g1_1245_TPlot.pdf
TRINITY_DN4236_c0_g1:1246	si_s211	TRINITY_DN4236_c0_g1	1235	1255	1246	-38.00	-28.00	0.736842105263158	7	2-15,1254-1241;18-21,1238-1235	1-1,1255-1255[UP5];16-17,1240-1239[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	GCGGCCUCGGAUACGAUUGGG&ACCAGUUGUGUUCGAAACCGC	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s211_TRINITY_DN4236_c0_g1_1246_TPlot.pdf
TRINITY_DN4236_c0_g1:1247	si_s210	TRINITY_DN4236_c0_g1	1236	1256	1247	-35.90	-24.90	0.693593314763231	8.5	3-16,1254-1241;19-21,1238-1236	1-2,1256-1255[UP5];17-18,1240-1239[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	CGGCCUCGGAUACGAUUGGGC&UACCAGUUGUGUUCGAAACCG	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN4236_c0_g1_1247_TPlot.pdf
TRINITY_DN4236_c0_g1:1250	si_s207	TRINITY_DN4236_c0_g1	1239	1259	1250	-33.00	-22.40	0.678787878787879	9	1-3,1259-1257;6-19,1254-1241	4-5,1256-1255[SIL];20-21,1240-1239[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	CCUCGGAUACGAUUGGGCCAU&AUGUACCAGUUGUGUUCGAAA	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN4236_c0_g1_1250_TPlot.pdf
TRINITY_DN4236_c0_g1:1542	si_s79	TRINITY_DN4236_c0_g1	1530	1551	1542	-26.20	-18.30	0.698473282442748	11.5	5-11,1547-1541;12-20,1539-1531	1-4,1551-1548[UP5];x-x,1540-1540[BULt];21-21,1530-1530[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	CAGAAGGAAGAGAAGGAACAUC&UUUUUUCUUUC-CUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4236_c0_g1_1542_TPlot.pdf
TRINITY_DN4236_c0_g1:1543	si_s78	TRINITY_DN4236_c0_g1	1531	1552	1543	-26.20	-18.30	0.698473282442748	12.5	6-12,1547-1541;13-21,1539-1531	1-5,1552-1548[UP5];x-x,1540-1540[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	AGAAGGAAGAGAAGGAACAUCA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4236_c0_g1_1543_TPlot.pdf
TRINITY_DN4236_c0_g1:1544	si_s77	TRINITY_DN4236_c0_g1	1532	1553	1544	-25.50	-17.10	0.670588235294118	13.5	7-13,1547-1541;14-21,1539-1532	1-6,1553-1548[UP5];x-x,1540-1540[BULt]	((((((((.(((((((......&......)))))))-))))))))	GAAGGAAGAGAAGGAACAUCAU&UUUUUUUUCUUUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4236_c0_g1_1544_TPlot.pdf
TRINITY_DN4236_c0_g1:1647	si_a297	TRINITY_DN4236_c0_g1	1636	1657	1647	-27.20	-18.10	0.665441176470588	8	1-7,1657-1651;8-11,1649-1646;14-21,1643-1636	x-x,1650-1650[BULt];12-13,1645-1644[SIL]	((((((((..((((.(((((((&)))))))-))))..))))))))	CUGAGCGAUGCUUUGUUUGAGU&AUUUAAA-AAAGAUUCGCUUGG	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN4236_c0_g1_1647_TPlot.pdf
TRINITY_DN4236_c0_g1:1959	si_s77	TRINITY_DN4236_c0_g1	1944	1968	1959	-25.50	-19.30	0.756862745098039	10	1-14,1968-1955;15-21,1950-1944	x-x,1954-1951[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	GAGGGAGUGCUGGAGAGAGAGGAAG&UUUUUUUUCUUUCC----UUUCUUC	3	0.999999999985845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4236_c0_g1_1959_TPlot.pdf
TRINITY_DN4236_c0_g1:1960	si_s76	TRINITY_DN4236_c0_g1	1944	1969	1960	-23.60	-17.70	0.75	11.5	1-15,1969-1955;16-21,1949-1944	x-x,1954-1950[BULt]	((((((.....(((((((((((((((&)))))))))))))))-----))))))	GAGGGAGUGCUGGAGAGAGAGGAAGU&AUUUUUUUUCUUUCC-----UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4236_c0_g1_1960_TPlot.pdf
TRINITY_DN4236_c0_g1:2018	si_s93	TRINITY_DN4236_c0_g1	2007	2027	2018	-34.80	-23.30	0.669540229885058	7	2-13,2026-2015;15-18,2013-2010	1-1,2027-2027[UP5];14-14,2014-2014[SIL];19-21,2009-2007[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	CGGCUGGUGCGGAGAAGAAGU&UCUUCUUCUUCGCUUCGGAUU	4	0.999999999733605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4236_c0_g1_2018_TPlot.pdf
TRINITY_DN4236_c0_g1:2020	si_s91	TRINITY_DN4236_c0_g1	2009	2029	2020	-34.70	-23.30	0.671469740634006	9	4-15,2026-2015;17-20,2013-2010	1-3,2029-2027[UP5];16-16,2014-2014[SIL];21-21,2009-2009[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	GCUGGUGCGGAGAAGAAGUCC&UUUCUUCUUCUUCGCUUCGGA	4	0.999999999999584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4236_c0_g1_2020_TPlot.pdf
TRINITY_DN4236_c0_g1:2021	si_s90	TRINITY_DN4236_c0_g1	2010	2035	2021	-35.30	-24.00	0.679886685552408	14.5	1-6,2035-2030;7-16,2024-2015;18-21,2013-2010	x-x,2029-2025[BULt];17-17,2014-2014[SIL]	((((.((((((((((.....((((((&))))))-----)))))))))).))))	CUGGUGCGGAGAAGAAGUCCGGAGAG&CUUUCU-----UCUUCUUCGCUUCGG	4	0.999999999840997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4236_c0_g1_2021_TPlot.pdf
TRINITY_DN4236_c0_g1:2030	si_s81	TRINITY_DN4236_c0_g1	2016	2039	2030	-28.90	-21.90	0.757785467128028	11.5	2-10,2038-2030;11-20,2026-2017	1-1,2039-2039[UP5];x-x,2029-2027[BULt];21-21,2016-2016[UP3]	.((((((((((...(((((((((.&.)))))))))---)))))))))).	CGGAGAAGAAGUCCGGAGAGAAGG&UUUUCUUUCC---UUUCUUCUUCU	4	0.99999994174196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4236_c0_g1_2030_TPlot.pdf
TRINITY_DN4236_c0_g1:2080	si_a328	TRINITY_DN4236_c0_g1	2067	2088	2080	-30.10	-19.60	0.651162790697674	8	1-9,2088-2080;12-14,2079-2077;15-21,2073-2067	10-11,x-x[BULq];x-x,2076-2074[BULt]	(((((((...(((--(((((((((&)))))))))..)))---)))))))	GGGACAAACUGGA--GAAAAAAUC&GAUUUUUUUAUUCC---UUGUCCC	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4236_c0_g1_2080_TPlot.pdf
TRINITY_DN4236_c0_g1:2861	si_a19	TRINITY_DN4236_c0_g1	2850	2870	2861	-27.00	-17.78	0.658518518518519	9	1-5,2870-2866;9-12,2862-2859;14-21,2857-2850	6-8,2865-2863[SIL];13-13,2858-2858[SIL]	((((((((.((((...(((((&)))))...)))).))))))))	GGAACUGAUGAUAUGCAGGCU&AGCCUAUUUAUUUUUAGUUCU	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4236_c0_g1_2861_TPlot.pdf
TRINITY_DN4236_c0_g1:801	si_a626	TRINITY_DN4236_c0_g1	790	811	801	-30.20	-19.98	0.66158940397351	13.5	1-7,811-805;13-21,798-790	8-12,804-799[AILt]	(((((((((......(((((((&)))))))-.....)))))))))	GAGGAUCGAAAAGUUUACGCCU&AGGCGUA-UUAUGUCGAUUUUU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN4236_c0_g1_801_TPlot.pdf
TRINITY_DN4236_c0_g1:802	si_a625	TRINITY_DN4236_c0_g1	791	812	802	-30.60	-19.98	0.652941176470588	12	1-8,812-805;14-21,798-791	9-13,804-799[AILt]	((((((((......((((((((&))))))))-.....))))))))	AGGAUCGAAAAGUUUACGCCUA&UAGGCGUA-UUAUGUCGAUUUU	2	0.997609809439789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN4236_c0_g1_802_TPlot.pdf
TRINITY_DN42384_c0_g1:227	si_a795	TRINITY_DN42384_c0_g1	216	236	227	-30.20	-22.40	0.741721854304636	8.5	4-19,233-218	1-3,236-234[UP5];20-21,217-216[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUUGGAUUGGAGAAUAGCGG&UUUCUAUUUUCCAAUCCGAAG	1	0.0054060435639518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN42384_c0_g1_227_TPlot.pdf
TRINITY_DN4239_c0_g1:1779	si_a459	TRINITY_DN4239_c0_g1	1768	1788	1779	-23.20	-15.20	0.655172413793103	11	6-21,1783-1768	1-5,1788-1784[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUACAUAUUGUAUAUGUUUUA&GUUGUUAUAUAUAAUAUGUAA	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN4239_c0_g1_1779_TPlot.pdf
TRINITY_DN4239_c0_g1:396	si_s73	TRINITY_DN4239_c0_g1	383	405	396	-24.00	-15.60	0.65	9.5	1-3,405-403;5-14,401-392;15-20,389-384	4-4,402-402[SIL];x-x,391-390[BULt];21-21,383-383[UP3]	.((((((..((((((((((.(((&))).))))))))))--)))))).	UGAGGAAGCAGAGGAGAAAAGGA&UCUAUUUUUUUUCU--UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4239_c0_g1_396_TPlot.pdf
TRINITY_DN4239_c0_g1:887	si_s77	TRINITY_DN4239_c0_g1	873	896	887	-25.50	-16.70	0.654901960784314	9.5	2-11,895-886;13-16,885-882;17-21,877-873	1-1,896-896[UP5];12-12,x-x[BULq];x-x,881-878[BULt]	(((((....((((-((((((((((.&.)))))))))).))))----)))))	GAAGAUUUAGAGG-AAGAAAGAGAU&UUUUUUUUCUUUCCUU----UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4239_c0_g1_887_TPlot.pdf
TRINITY_DN423_c0_g1:1458	si_a67	TRINITY_DN423_c0_g1	1441	1467	1458	-27.20	-19.60	0.720588235294118	9	1-10,1467-1458;11-13,1456-1454;14-21,1448-1441	x-x,1457-1457[BULt];x-x,1453-1449[BULt]	((((((((.....(((.((((((((((&))))))))))-)))-----))))))))	GAAGAACAUCGAAGUUAUGAAAGAGGC&GCUUCUUUCA-AAU-----UGUUUUUC	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN423_c0_g1_1458_TPlot.pdf
TRINITY_DN423_c0_g1:1468	si_a69	TRINITY_DN423_c0_g1	1457	1477	1468	-24.00	-16.50	0.6875	7	1-10,1477-1468;12-12,1466-1466;14-21,1464-1457	11-11,1467-1467[SIL];13-13,1465-1465[SIL]	((((((((.(.((((((((((&)))))))))).).))))))))	AUGAAAGAGGCUUUGGAGGAG&UUCUUUCAAAUUGUUUUUCAU	2	0.999952601456911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN423_c0_g1_1468_TPlot.pdf
TRINITY_DN423_c0_g1:1511	si_s93	TRINITY_DN423_c0_g1	1496	1520	1511	-34.80	-24.00	0.689655172413793	12	1-11,1520-1510;12-17,1505-1500	x-x,1509-1506[BULt];18-21,1499-1496[UP3]	....((((((....(((((((((((&)))))))))))----))))))....	CAAACGAAGCCUGAGAAGAAGAAGA&UCUUCUUCUUC----GCUUCGGAUU	3	0.999998291633412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN423_c0_g1_1511_TPlot.pdf
TRINITY_DN423_c0_g1:1512	si_s92	TRINITY_DN423_c0_g1	1497	1521	1512	-34.90	-24.90	0.713467048710602	11	1-12,1521-1510;13-18,1505-1500	x-x,1509-1506[BULt];19-21,1499-1497[UP3]	...((((((....((((((((((((&))))))))))))----))))))...	AAACGAAGCCUGAGAAGAAGAAGAA&UUCUUCUUCUUC----GCUUCGGAU	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN423_c0_g1_1512_TPlot.pdf
TRINITY_DN423_c0_g1:1515	si_s89	TRINITY_DN423_c0_g1	1500	1524	1515	-35.30	-25.20	0.713881019830028	8	3-15,1522-1510;16-21,1505-1500	1-2,1524-1523[UP5];x-x,1509-1506[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	CGAAGCCUGAGAAGAAGAAGAAGAA&CCUUUCUUCUUCUUC----GCUUCG	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN423_c0_g1_1515_TPlot.pdf
TRINITY_DN423_c0_g1:1516	si_s88	TRINITY_DN423_c0_g1	1501	1532	1516	-34.80	-24.40	0.701149425287356	19	1-5,1532-1528;6-16,1520-1510;17-21,1505-1501	x-x,1527-1521[BULt];x-x,1509-1506[BULt]	(((((....(((((((((((.......(((((&)))))-------)))))))))))----)))))	GAAGCCUGAGAAGAAGAAGAAGAAAAAGAGGA&UCCUU-------UCUUCUUCUUC----GCUUC	2	0.999980654327022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN423_c0_g1_1516_TPlot.pdf
TRINITY_DN423_c0_g1:1517	si_s87	TRINITY_DN423_c0_g1	1502	1533	1517	-32.90	-22.00	0.668693009118541	19	1-6,1533-1528;7-17,1520-1510;18-21,1505-1502	x-x,1527-1521[BULt];x-x,1509-1506[BULt]	((((....(((((((((((.......((((((&))))))-------)))))))))))----))))	AAGCCUGAGAAGAAGAAGAAGAAAAAGAGGAA&UUCCUU-------UCUUCUUCUUC----GCUU	2	0.999999999999811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN423_c0_g1_1517_TPlot.pdf
TRINITY_DN423_c0_g1:1521	si_s86	TRINITY_DN423_c0_g1	1510	1534	1521	-32.90	-22.00	0.668693009118541	12.5	1-7,1534-1528;8-18,1523-1513	x-x,1527-1524[BULt];19-21,1512-1510[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	GAAGAAGAAGAAGAAAAAGAGGAAG&UUUCCUU----UCUUCUUCUUCGCU	2	0.999999999999116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN423_c0_g1_1521_TPlot.pdf
TRINITY_DN423_c0_g1:1522	si_s85	TRINITY_DN423_c0_g1	1511	1535	1522	-33.80	-24.50	0.724852071005917	12	1-8,1535-1528;9-19,1523-1513	x-x,1527-1524[BULt];20-21,1512-1511[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	AAGAAGAAGAAGAAAAAGAGGAAGG&CUUUCCUU----UCUUCUUCUUCGC	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN423_c0_g1_1522_TPlot.pdf
TRINITY_DN423_c0_g1:1523	si_s84	TRINITY_DN423_c0_g1	1512	1536	1523	-32.30	-24.50	0.758513931888545	12	2-9,1535-1528;10-20,1523-1513	1-1,1536-1536[UP5];x-x,1527-1524[BULt];21-21,1512-1512[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	AGAAGAAGAAGAAAAAGAGGAAGGC&UCUUUCCUU----UCUUCUUCUUCG	2	0.989223615669991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN423_c0_g1_1523_TPlot.pdf
TRINITY_DN423_c0_g1:1526	si_s69	TRINITY_DN423_c0_g1	1515	1536	1526	-23.40	-15.70	0.670940170940171	10	3-7,1534-1530;9-20,1527-1516	1-2,1536-1535[UP5];8-8,1529-1528[AILt];21-21,1515-1515[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	AGAAGAAGAAAAAGAGGAAGGC&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN423_c0_g1_1526_TPlot.pdf
TRINITY_DN423_c0_g1:1527	si_s68	TRINITY_DN423_c0_g1	1516	1537	1527	-23.10	-15.50	0.670995670995671	11	4-8,1534-1530;10-21,1527-1516	1-3,1537-1535[UP5];9-9,1529-1528[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	GAAGAAGAAAAAGAGGAAGGCG&CAACUUCU-AUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN423_c0_g1_1527_TPlot.pdf
TRINITY_DN423_c0_g1:1529	si_s82	TRINITY_DN423_c0_g1	1514	1538	1529	-28.90	-20.90	0.72318339100346	15	4-11,1535-1528;12-21,1523-1514	1-3,1538-1536[UP5];x-x,1527-1524[BULt]	((((((((((....((((((((...&...))))))))----))))))))))	AAGAAGAAGAAAAAGAGGAAGGCGG&UUUCUUUCCUU----UCUUCUUCUU	2	0.999999990242138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN423_c0_g1_1529_TPlot.pdf
TRINITY_DN423_c0_g1:1530	si_s81	TRINITY_DN423_c0_g1	1515	1539	1530	-28.90	-20.40	0.705882352941176	14	1-3,1539-1537;5-12,1535-1528;13-21,1523-1515	4-4,1536-1536[SIL];x-x,1527-1524[BULt]	(((((((((....((((((((.(((&))).))))))))----)))))))))	AGAAGAAGAAAAAGAGGAAGGCGGA&UUUUCUUUCCUU----UCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN423_c0_g1_1530_TPlot.pdf
TRINITY_DN423_c0_g1:1531	si_s80	TRINITY_DN423_c0_g1	1516	1540	1531	-28.20	-20.00	0.709219858156028	9.5	1-4,1540-1537;6-13,1535-1528;14-21,1523-1516	5-5,1536-1536[SIL];x-x,1527-1524[BULt]	((((((((....((((((((.((((&)))).))))))))----))))))))	GAAGAAGAAAAAGAGGAAGGCGGAA&UUUUUCUUUCCUU----UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN423_c0_g1_1531_TPlot.pdf
TRINITY_DN423_c0_g1:1532	si_s79	TRINITY_DN423_c0_g1	1517	1541	1532	-26.20	-17.20	0.656488549618321	10	1-5,1541-1537;7-14,1535-1528;15-21,1523-1517	6-6,1536-1536[SIL];x-x,1527-1524[BULt]	(((((((....((((((((.(((((&))))).))))))))----)))))))	AAGAAGAAAAAGAGGAAGGCGGAAG&UUUUUUCUUUCCUU----UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN423_c0_g1_1532_TPlot.pdf
TRINITY_DN423_c0_g1:1537	si_a600	TRINITY_DN423_c0_g1	1527	1546	1537	-29.70	-19.60	0.65993265993266	8	1-12,1546-1535;15-18,1533-1530	13-14,1534-1534[AILq];19-21,1529-1527[UP3]	...((((.-((((((((((((&))))))))))))..))))...	AGAGGAAG-GCGGAAGUUUUG&CAGAAUUUUCGCAAUUCCAAU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN423_c0_g1_1537_TPlot.pdf
TRINITY_DN423_c0_g1:1609	si_s82	TRINITY_DN423_c0_g1	1598	1618	1609	-28.90	-19.60	0.678200692041523	5.5	1-7,1618-1612;10-21,1609-1598	8-9,1611-1610[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAAGAAGAAAAAGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN423_c0_g1_1609_TPlot.pdf
TRINITY_DN423_c0_g1:1610	si_s69	TRINITY_DN423_c0_g1	1599	1620	1610	-23.40	-16.50	0.705128205128205	7	2-7,1619-1614;9-20,1611-1600	1-1,1620-1620[UP5];8-8,1613-1612[AILt];21-21,1599-1599[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	AGAAGAAGAAAAAGAAGAAGUC&AACUUCU-AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN423_c0_g1_1610_TPlot.pdf
TRINITY_DN423_c0_g1:1611	si_s68	TRINITY_DN423_c0_g1	1600	1621	1611	-23.10	-16.30	0.705627705627706	8	3-8,1619-1614;10-21,1611-1600	1-2,1621-1620[UP5];9-9,1613-1612[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GAAGAAGAAAAAGAAGAAGUCA&CAACUUCU-AUUUUUUUUCUUU	3	0.999999999600452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN423_c0_g1_1611_TPlot.pdf
TRINITY_DN423_c0_g1:1714	si_s82	TRINITY_DN423_c0_g1	1703	1724	1714	-28.90	-19.60	0.678200692041523	8	3-8,1722-1717;10-21,1714-1703	1-2,1724-1723[UP5];9-9,1716-1715[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	AAGAAGAAGAAACAGGAAGAUG&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN423_c0_g1_1714_TPlot.pdf
TRINITY_DN423_c0_g1:1823	si_a1	TRINITY_DN423_c0_g1	1812	1832	1823	-28.30	-18.80	0.664310954063604	3	1-20,1832-1813	21-21,1812-1812[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UCUUUUUUUUUAAUUUCAAUU&AAUUGAAAUUGAAGAGAAAGC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN423_c0_g1_1823_TPlot.pdf
TRINITY_DN4240_c0_g1:1041	si_a370	TRINITY_DN4240_c0_g1	1030	1050	1041	-29.50	-22.30	0.755932203389831	5.5	3-14,1048-1037;16-21,1035-1030	1-2,1050-1049[UP5];15-15,1036-1036[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	CGAAAUGGUUUUUGAUUCGGA&AUCGGAUCAAAAAUGAUUUCG	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN4240_c0_g1_1041_TPlot.pdf
TRINITY_DN4240_c0_g1:12032	si_s319	TRINITY_DN4240_c0_g1	12021	12042	12032	-31.30	-20.70	0.661341853035144	10.5	1-8,12042-12035;9-16,12033-12026	x-x,12034-12034[BULt];17-21,12025-12021[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	GCCGCUGUGGCAGUGGAGGACA&UGUCCUUC-UUGUUACAAACAU	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN4240_c0_g1_12032_TPlot.pdf
TRINITY_DN4240_c0_g1:12513	si_a222	TRINITY_DN4240_c0_g1	12501	12522	12513	-25.20	-16.50	0.654761904761905	13.5	5-11,12518-12512;12-19,12510-12503	1-4,12522-12519[UP5];x-x,12511-12511[BULt];20-21,12502-12501[UP3]	..((((((((.(((((((....&....)))))))-))))))))..	GCUAUAGGAGUCGUGAGUGCAA&UUAAACUCAUG-UUUCUAUAAU	2	0.992488623126232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN4240_c0_g1_12513_TPlot.pdf
TRINITY_DN4240_c0_g1:932	si_s789	TRINITY_DN4240_c0_g1	921	941	932	-26.20	-18.30	0.698473282442748	15.5	8-21,934-921	1-7,941-935[UP5]	((((((((((((((.......&.......))))))))))))))	GUGAGGUGCGAGCUCUUCUCG&UAAAACAAGCUCGUAUUUUAU	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN4240_c0_g1_932_TPlot.pdf
TRINITY_DN4240_c0_g1:9475	si_s591	TRINITY_DN4240_c0_g1	9460	9485	9475	-33.60	-23.10	0.6875	8	1-5,9485-9481;6-15,9479-9470;16-19,9465-9462	x-x,9480-9480[BULt];x-x,9469-9466[BULt];20-21,9461-9460[UP3]	..((((....((((((((((.(((((&)))))-))))))))))----))))..	GACGCUUUCGUGGAUUUAUCUCAUGA&UCAUG-GAUAAAUCCA----AGCGAA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s591_TRINITY_DN4240_c0_g1_9475_TPlot.pdf
TRINITY_DN4240_c0_g1:9561	si_a139	TRINITY_DN4240_c0_g1	9550	9570	9561	-25.90	-17.10	0.66023166023166	13	7-21,9564-9550	1-6,9570-9565[UP5]	(((((((((((((((......&......)))))))))))))))	GAGCAAUAGCGAUUACGGAGA&AGUAAUUAAUCGUUGUUGUUU	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN4240_c0_g1_9561_TPlot.pdf
TRINITY_DN4240_c1_g1:1976	si_a761	TRINITY_DN4240_c1_g1	1965	1985	1976	-30.10	-20.10	0.667774086378738	10	1-4,1985-1982;6-11,1980-1975;13-18,1973-1968	5-5,1981-1981[SIL];12-12,1974-1974[SIL];19-21,1967-1965[UP3]	...((((((.((((((.((((&)))).)))))).))))))...	AUCCAGUCGCAGACCCCGAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.9999999816632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4240_c1_g1_1976_TPlot.pdf
TRINITY_DN4240_c1_g1:2056	si_a143	TRINITY_DN4240_c1_g1	2044	2065	2056	-25.10	-17.30	0.689243027888446	12	5-16,2061-2050;17-21,2048-2044	1-4,2065-2062[UP5];x-x,2049-2049[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	CUUGGCGACGACAGCGGUCUUC&AUUAAUCGUUGUUGUU-UUAAG	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN4240_c1_g1_2056_TPlot.pdf
TRINITY_DN4242_c0_g1:1232	si_a480	TRINITY_DN4242_c0_g1	1221	1241	1232	-23.70	-17.70	0.746835443037975	6	1-11,1241-1231;13-19,1229-1223;21-21,1221-1221	12-12,1230-1230[SIL];20-20,1222-1222[SIL]	(.(((((((.(((((((((((&))))))))))).))))))).)	AGGUGUUCUUUAUAACGAUGA&UUAUUGUUAUAUAGAAUAUGU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN4242_c0_g1_1232_TPlot.pdf
TRINITY_DN4242_c0_g1:1235	si_a477	TRINITY_DN4242_c0_g1	1224	1244	1235	-21.50	-15.50	0.720930232558139	8.5	4-14,1241-1231;16-21,1229-1224	1-3,1244-1242[UP5];15-15,1230-1230[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UGUUCUUUAUAACGAUGAAGA&UAAUUAUUGUUAUAUAGAAUA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN4242_c0_g1_1235_TPlot.pdf
TRINITY_DN4242_c0_g1:1757	si_s491	TRINITY_DN4242_c0_g1	1746	1766	1757	-19.50	-14.70	0.753846153846154	5	1-13,1766-1754;15-20,1752-1747	14-14,1753-1753[SIL];21-21,1746-1746[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UUUUUGUAUAUAUUUGAGUGA&UUAUUUAAAUAUAAACAAAAC	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN4242_c0_g1_1757_TPlot.pdf
TRINITY_DN4242_c0_g1:1758	si_s490	TRINITY_DN4242_c0_g1	1747	1767	1758	-17.80	-14.90	0.837078651685393	5	2-14,1766-1754;16-21,1752-1747	1-1,1767-1767[UP5];15-15,1753-1753[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	UUUUGUAUAUAUUUGAGUGAG&UUUAUUUAAAUAUAAACAAAA	0	0.00995604775382863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN4242_c0_g1_1758_TPlot.pdf
TRINITY_DN4242_c0_g1:1759	si_s489	TRINITY_DN4242_c0_g1	1748	1768	1759	-17.90	-14.00	0.782122905027933	7	3-15,1766-1754;17-21,1752-1748	1-2,1768-1767[UP5];16-16,1753-1753[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UUUGUAUAUAUUUGAGUGAGA&AUUUAUUUAAAUAUAAACAAA	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN4242_c0_g1_1759_TPlot.pdf
TRINITY_DN4242_c0_g1:1760	si_s488	TRINITY_DN4242_c0_g1	1749	1769	1760	-18.30	-13.10	0.715846994535519	9	4-16,1766-1754;18-21,1752-1749	1-3,1769-1767[UP5];17-17,1753-1753[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UUGUAUAUAUUUGAGUGAGAC&UAUUUAUUUAAAUAUAAACAA	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN4242_c0_g1_1760_TPlot.pdf
TRINITY_DN4242_c0_g1:1761	si_s487	TRINITY_DN4242_c0_g1	1750	1770	1761	-18.40	-12.20	0.66304347826087	11	5-17,1766-1754;19-21,1752-1750	1-4,1770-1767[UP5];18-18,1753-1753[SIL]	(((.(((((((((((((....&....))))))))))))).)))	UGUAUAUAUUUGAGUGAGACA&AUAUUUAUUUAAAUAUAAACA	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN4242_c0_g1_1761_TPlot.pdf
TRINITY_DN4242_c0_g1:555	si_a70	TRINITY_DN4242_c0_g1	544	564	555	-23.90	-16.40	0.686192468619247	10	3-18,562-547	1-2,564-563[UP5];19-21,546-544[UP3]	...((((((((((((((((..&..))))))))))))))))...	CCCGGAGGGCGAUUUGAAGAA&UCUUUCAAAUUGUUUUUCAUU	4	0.999999923809806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4242_c0_g1_555_TPlot.pdf
TRINITY_DN4242_c0_g1:835	si_a790	TRINITY_DN4242_c0_g1	824	844	835	-25.80	-19.10	0.74031007751938	7.5	3-5,842-840;7-21,838-824	1-2,844-843[UP5];6-6,839-839[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GGUUGGAAAAUAGAAUGGUCA&CUAUUUUUCUAUUUUCCAAUC	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4242_c0_g1_835_TPlot.pdf
TRINITY_DN4243_c0_g1:527	si_s71	TRINITY_DN4243_c0_g1	515	536	527	-25.70	-18.00	0.700389105058366	9	1-2,536-535;4-11,533-526;12-20,524-516	3-3,534-534[SIL];x-x,525-525[BULt];21-21,515-515[UP3]	.(((((((((.((((((((.((&)).))))))))-))))))))).	UGGAGAGAGGUAGAAAUAGCGG&CUUCUAUUUUU-UUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4243_c0_g1_527_TPlot.pdf
TRINITY_DN4243_c0_g1:528	si_s70	TRINITY_DN4243_c0_g1	516	537	528	-25.80	-17.60	0.682170542635659	8.5	2-3,536-535;5-12,533-526;13-21,524-516	1-1,537-537[UP5];4-4,534-534[SIL];x-x,525-525[BULt]	(((((((((.((((((((.((.&.)).))))))))-)))))))))	GGAGAGAGGUAGAAAUAGCGGA&ACUUCUAUUUUU-UUUCUUUCC	2	0.999999999970085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4243_c0_g1_528_TPlot.pdf
TRINITY_DN4244_c2_g1:1279	si_s84	TRINITY_DN4244_c2_g1	1268	1289	1279	-32.30	-21.30	0.659442724458204	5.5	1-6,1289-1284;7-13,1282-1276;15-20,1274-1269	x-x,1283-1283[BULt];14-14,1275-1275[SIL];21-21,1268-1268[UP3]	.((((((.(((((((.((((((&))))))-))))))).)))))).	AGAAGAGAAAGAAAGAGAAGGA&UCUUUC-CUUUCUUCUUCUUCG	2	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4244_c2_g1_1279_TPlot.pdf
TRINITY_DN4244_c2_g1:1281	si_s73	TRINITY_DN4244_c2_g1	1269	1289	1281	-24.00	-16.50	0.6875	6.5	1-3,1289-1287;5-17,1286-1274;18-21,1272-1269	4-4,x-x[BULq];x-x,1273-1273[BULt]	((((.(((((((((((((-(((&))).)))))))))))))-))))	GAAGAGAAAGAAAGAGAA-GGA&UCUAUUUUUUUUCUUUC-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4244_c2_g1_1281_TPlot.pdf
TRINITY_DN4244_c2_g1:1736	si_s69	TRINITY_DN4244_c2_g1	1725	1746	1736	-23.40	-15.30	0.653846153846154	10	4-8,1743-1739;9-21,1737-1725	1-3,1746-1744[UP5];x-x,1738-1738[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GGAGGAAAAGAGACUAGAACGA&AACUUCUA-UUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4244_c2_g1_1736_TPlot.pdf
TRINITY_DN42459_c0_g1:179	si_a591	TRINITY_DN42459_c0_g1	161	189	179	-33.80	-22.48	0.66508875739645	11.5	1-8,189-182;9-15,180-174;18-21,164-161	x-x,181-181[BULt];16-17,173-165[AILt]	((((.........(((((((.((((((((&))))))))-)))))))-------..))))	GCGACUUUCAGAUGUUCUGUACCUUCUUG&CAAGAAGG-ACAGAAU-------UUUCGC	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN42459_c0_g1_179_TPlot.pdf
TRINITY_DN42459_c0_g1:180	si_a590	TRINITY_DN42459_c0_g1	170	190	180	-32.10	-22.40	0.697819314641745	5.5	1-9,190-182;10-16,180-174;19-20,172-171	x-x,181-181[BULt];17-18,173-173[AILq];21-21,170-170[UP3]	.((.-(((((((.(((((((((&)))))))))-)))))))..)).	AGAU-GUUCUGUACCUUCUUGU&ACAAGAAGG-ACAGAAUUUUCG	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a590_TRINITY_DN42459_c0_g1_180_TPlot.pdf
TRINITY_DN42459_c0_g1:186	si_a585	TRINITY_DN42459_c0_g1	174	198	186	-31.60	-24.20	0.765822784810127	7.5	1-5,198-194;6-14,190-182;15-21,180-174	x-x,193-191[BULt];x-x,181-181[BULt]	(((((((.(((((((((...(((((&)))))---)))))))))-)))))))	GUUCUGUACCUUCUUGUUCUUACAA&UUGUA---ACAAGAAGG-ACAGAAU	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN42459_c0_g1_186_TPlot.pdf
TRINITY_DN42459_c0_g1:188	si_a583	TRINITY_DN42459_c0_g1	176	200	188	-33.10	-22.70	0.685800604229607	9	2-7,199-194;8-16,190-182;17-21,180-176	1-1,200-200[UP5];x-x,193-191[BULt];x-x,181-181[BULt]	(((((.(((((((((...((((((.&.))))))---)))))))))-)))))	UCUGUACCUUCUUGUUCUUACAAGG&GUUUGUA---ACAAGAAGG-ACAGA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a583_TRINITY_DN42459_c0_g1_188_TPlot.pdf
TRINITY_DN42459_c0_g1:96	si_a66	TRINITY_DN42459_c0_g1	85	105	96	-26.70	-17.40	0.651685393258427	9.5	1-8,105-98;10-17,96-89	9-9,97-97[SIL];18-21,88-85[UP3]	....((((((((.((((((((&)))))))).))))))))....	AUGCACAGUUUGCGGGAAGUG&CGCUUCUUUCAAAUUGUUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN42459_c0_g1_96_TPlot.pdf
TRINITY_DN4245_c0_g1:1269	si_a151	TRINITY_DN4245_c0_g1	1260	1277	1269	-28.90	-18.80	0.650519031141869	8.5	2-9,1276-1269;13-20,1268-1261	1-1,1277-1277[UP5];10-12,x-x[BULq];21-21,1260-1260[UP3]	.((((((((---((((((((.&.))))))))...)))))))).	UGGUUGACC---AAACAACAU&UUGUUGUUUUAAGGUCAAUCU	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN4245_c0_g1_1269_TPlot.pdf
TRINITY_DN4246_c0_g1:332	si_a534	TRINITY_DN4246_c0_g1	321	342	332	-39.70	-26.00	0.654911838790932	10	2-2,341-341;4-9,339-334;10-18,332-324	1-1,342-342[UP5];3-3,340-340[SIL];x-x,333-333[BULt];19-21,323-321[UP3]	...(((((((((.((((((.(.&.).))))))-)))))))))...	AAAUGGGCCGGUACGCUCGGGA&ACGCGAGCG-AUCGGUUCAAUC	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a534_TRINITY_DN4246_c0_g1_332_TPlot.pdf
TRINITY_DN4246_c0_g1:653	si_s766	TRINITY_DN4246_c0_g1	642	664	653	-28.20	-18.68	0.66241134751773	12	1-8,664-657;11-20,652-643	9-10,656-653[AILt];21-21,642-642[UP3]	.((((((((((....((((((((&))))))))--..)))))))))).	UCAAUGGUGGUGUGGGUCGUUGU&ACAACGAU--UAAUUACUAUUGC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s766_TRINITY_DN4246_c0_g1_653_TPlot.pdf
TRINITY_DN4246_c0_g1:654	si_s765	TRINITY_DN4246_c0_g1	643	665	654	-25.70	-18.98	0.73852140077821	11.5	2-9,664-657;12-21,652-643	1-1,665-665[UP5];10-11,656-653[AILt]	((((((((((....((((((((.&.))))))))--..))))))))))	CAAUGGUGGUGUGGGUCGUUGUG&AACAACGAU--UAAUUACUAUUG	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s765_TRINITY_DN4246_c0_g1_654_TPlot.pdf
TRINITY_DN42476_c0_g1:95	si_a240	TRINITY_DN42476_c0_g1	74	104	95	-35.00	-24.00	0.685714285714286	15	3-14,102-91;15-21,80-74	1-2,104-103[UP5];x-x,90-81[BULt]	(((((((..........((((((((((((..&..))))))))))))----------)))))))	AAUCGGGAAUCGAUAUCGGAUCGGGUUGAGU&AAUCAAUUCGAUCC----------CCCGAUU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a240_TRINITY_DN42476_c0_g1_95_TPlot.pdf
TRINITY_DN4248_c0_g1:1656	si_a122	TRINITY_DN4248_c0_g1	1643	1665	1656	-29.00	-19.20	0.662068965517241	9	1-9,1665-1657;12-16,1654-1650;17-20,1647-1644	10-11,1656-1655[SIL];x-x,1649-1648[BULt];21-21,1643-1643[UP3]	.((((..(((((..(((((((((&)))))))))..)))))--)))).	GACUAGAUUGCUCGAGGACAAGC&GCUUGUUUUAUAGCAA--UAGUA	2	0.986177743532797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN4248_c0_g1_1656_TPlot.pdf
TRINITY_DN4249_c0_g1:107	si_a634	TRINITY_DN4249_c0_g1	97	116	107	-26.40	-20.80	0.787878787878788	4.5	1-14,116-103;16-20,102-98	15-15,x-x[BULq];21-21,97-97[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	AUACUC-AAAAAAUCGGCGUG&UAUGUCGAUUUUUUUGAGUAA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4249_c0_g1_107_TPlot.pdf
TRINITY_DN4251_c0_g1:186	si_s82	TRINITY_DN4251_c0_g1	175	195	186	-28.90	-19.10	0.660899653979239	8	4-8,192-188;10-21,186-175	1-3,195-193[UP5];9-9,187-187[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AGGAGGAAGAAAUGAAAGCAC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4251_c0_g1_186_TPlot.pdf
TRINITY_DN4252_c0_g1:1817	si_a899	TRINITY_DN4252_c0_g1	1806	1826	1817	-18.70	-12.20	0.652406417112299	6	2-6,1825-1821;9-21,1818-1806	1-1,1826-1826[UP5];7-8,1820-1819[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	UUUUUAUAUUAUUGUUUAUUU&UAAUAAUAAGUAAUAUAAAAA	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN4252_c0_g1_1817_TPlot.pdf
TRINITY_DN4252_c0_g1:936	si_s76	TRINITY_DN4252_c0_g1	925	945	936	-23.60	-15.50	0.656779661016949	9	2-15,944-931	1-1,945-945[UP5];16-21,930-925[UP3]	......((((((((((((((.&.))))))))))))))......	UAUGCUGGAAGGAAAAAAGAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4252_c0_g1_936_TPlot.pdf
TRINITY_DN4254_c0_g1:2938	si_a618	TRINITY_DN4254_c0_g1	2927	2947	2938	-33.10	-22.10	0.667673716012085	8.5	2-5,2946-2943;7-17,2941-2931	1-1,2947-2947[UP5];6-6,2942-2942[SIL];18-21,2930-2927[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	AUCGGGUGCGCCUAGACGAUA&AAUCGACUAGGCGUAUUAUGU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a618_TRINITY_DN4254_c0_g1_2938_TPlot.pdf
TRINITY_DN4254_c0_g2:2264	si_a329	TRINITY_DN4254_c0_g2	2253	2273	2264	-29.60	-19.50	0.658783783783784	7	1-10,2273-2264;12-12,2262-2262;15-21,2259-2253	11-11,2263-2263[SIL];13-14,2261-2260[SIL]	(((((((..(.((((((((((&)))))))))).)..)))))))	CGGGACAUUGUAUGGAGAAAU&AUUUUUUUAUUCCUUGUCCCG	4	0.999999997472467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4254_c0_g2_2264_TPlot.pdf
TRINITY_DN4254_c0_g2:2608	si_a499	TRINITY_DN4254_c0_g2	2597	2619	2608	-35.20	-23.50	0.667613636363636	9	1-9,2619-2611;11-20,2607-2598	10-10,2610-2608[AILt];21-21,2597-2597[UP3]	.((((((((((...(((((((((&)))))))))--.)))))))))).	GCGAGGAAGACCACAAAAGCGAU&GUCGUUUUU--CGUCUUCCUUGG	3	0.999999999786684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4254_c0_g2_2608_TPlot.pdf
TRINITY_DN4254_c0_g2:2611	si_a498	TRINITY_DN4254_c0_g2	2598	2620	2611	-33.50	-23.50	0.701492537313433	9.5	2-10,2619-2611;12-21,2607-2598	1-1,2620-2620[UP5];11-11,2610-2608[AILt]	((((((((((...(((((((((.&.)))))))))--.))))))))))	CGAGGAAGACCACAAAAGCGAUG&UGUCGUUUUU--CGUCUUCCUUG	4	0.999988743695479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4254_c0_g2_2611_TPlot.pdf
TRINITY_DN4254_c0_g2:2612	si_a497	TRINITY_DN4254_c0_g2	2599	2621	2612	-32.00	-21.10	0.659375	11.5	3-11,2619-2611;13-21,2607-2599	1-2,2621-2620[UP5];12-12,2610-2608[AILt]	(((((((((...(((((((((..&..)))))))))--.)))))))))	GAGGAAGACCACAAAAGCGAUGG&AUGUCGUUUUU--CGUCUUCCUU	2	0.999999999986343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4254_c0_g2_2612_TPlot.pdf
TRINITY_DN4254_c0_g2:2712	si_a787	TRINITY_DN4254_c0_g2	2702	2722	2712	-26.30	-17.90	0.680608365019011	6.5	1-5,2722-2718;7-13,2715-2709;15-21,2708-2702	6-6,2717-2716[AILt];14-14,x-x[BULq]	(((((((-(((((((..(((((&)))))-.))))))).)))))))	UGGAAGA-AGAAGAAGAAGAAG&CUUCU-AUUUUUCUAUUUUCCA	2	0.999999435738506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4254_c0_g2_2712_TPlot.pdf
TRINITY_DN4254_c0_g2:2713	si_a786	TRINITY_DN4254_c0_g2	2703	2723	2713	-26.60	-18.10	0.680451127819549	6.5	1-6,2723-2718;8-14,2715-2709;16-21,2708-2703	7-7,2717-2716[AILt];15-15,x-x[BULq]	((((((-(((((((..((((((&))))))-.))))))).))))))	GGAAGA-AGAAGAAGAAGAAGA&UCUUCU-AUUUUUCUAUUUUCC	2	0.999999414271581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4254_c0_g2_2713_TPlot.pdf
TRINITY_DN4254_c1_g2:12	si_s147	TRINITY_DN4254_c1_g2	1	21	12	-33.10	-23.20	0.700906344410876	12	6-20,16-2	1-5,21-17[UP5];21-21,1-1[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUGGACCUUUUUUGGGGAAUA&AAAAACCCAAAGGAGGUUCAU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN4254_c1_g2_12_TPlot.pdf
TRINITY_DN4254_c2_g1:28	si_a619	TRINITY_DN4254_c2_g1	14	37	28	-35.10	-23.30	0.663817663817664	7.5	2-15,36-23;16-21,19-14	1-1,37-37[UP5];x-x,22-20[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	GACGUAUUCAUAUGUCUAGUUGAC&AUCGACUAGGCGUAU---UAUGUC	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a619_TRINITY_DN4254_c2_g1_28_TPlot.pdf
TRINITY_DN4255_c0_g1:1258	si_a112	TRINITY_DN4255_c0_g1	1247	1267	1258	-26.20	-17.90	0.683206106870229	15	6-17,1262-1251	1-5,1267-1263[UP5];18-21,1250-1247[UP3]	....((((((((((((.....&.....))))))))))))....	CUUCGACGAGCUCGUGCUCAG&UAAAAUACGAGCUUGUUUUAU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN4255_c0_g1_1258_TPlot.pdf
TRINITY_DN4255_c0_g1:1259	si_a111	TRINITY_DN4255_c0_g1	1248	1268	1259	-26.20	-17.90	0.683206106870229	16	7-18,1262-1251	1-6,1268-1263[UP5];19-21,1250-1248[UP3]	...((((((((((((......&......))))))))))))...	UUCGACGAGCUCGUGCUCAGU&AUAAAAUACGAGCUUGUUUUA	2	0.963508487859299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN4255_c0_g1_1259_TPlot.pdf
TRINITY_DN4255_c0_g1:1298	si_a331	TRINITY_DN4255_c0_g1	1287	1306	1298	-30.60	-20.80	0.679738562091503	11	1-8,1306-1299;11-19,1297-1289	9-10,1298-1298[AILq];20-21,1288-1287[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	ACCGGGGCGAGU-GUGAGAGA&UUUUUUAUUCCUUGUCCCGAA	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN4255_c0_g1_1298_TPlot.pdf
TRINITY_DN4255_c0_g1:1299	si_a330	TRINITY_DN4255_c0_g1	1288	1307	1299	-30.50	-21.70	0.711475409836065	10	1-9,1307-1299;12-20,1297-1289	10-11,1298-1298[AILq];21-21,1288-1288[UP3]	.(((((((((.-(((((((((&)))))))))..))))))))).	CCGGGGCGAGU-GUGAGAGAA&UUUUUUUAUUCCUUGUCCCGA	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN4255_c0_g1_1299_TPlot.pdf
TRINITY_DN4255_c0_g1:1301	si_a66	TRINITY_DN4255_c0_g1	1289	1310	1301	-26.70	-19.00	0.711610486891386	10.5	1-11,1310-1300;14-20,1296-1290	12-13,1299-1297[AILt];21-21,1289-1289[UP3]	.(((((((...(((((((((((&)))))))))))-..))))))).	CGGGGCGAGUGUGAGAGAAGUG&CGCUUCUUUCA-AAUUGUUUUU	4	0.99991663427952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4255_c0_g1_1301_TPlot.pdf
TRINITY_DN4255_c0_g1:1302	si_a65	TRINITY_DN4255_c0_g1	1290	1311	1302	-27.70	-19.10	0.689530685920578	9.5	2-12,1310-1300;15-21,1296-1290	1-1,1311-1311[UP5];13-14,1299-1297[AILt]	(((((((...(((((((((((.&.)))))))))))-..)))))))	GGGGCGAGUGUGAGAGAAGUGG&UCGCUUCUUUCA-AAUUGUUUU	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN4255_c0_g1_1302_TPlot.pdf
TRINITY_DN4255_c0_g1:1303	si_a64	TRINITY_DN4255_c0_g1	1291	1312	1303	-29.40	-19.20	0.653061224489796	9	2-13,1311-1300;16-21,1296-1291	1-1,1312-1312[UP5];14-15,1299-1297[AILt]	((((((...((((((((((((.&.))))))))))))-..))))))	GGGCGAGUGUGAGAGAAGUGGA&CUCGCUUCUUUCA-AAUUGUUU	3	0.999999933027961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN4255_c0_g1_1303_TPlot.pdf
TRINITY_DN4255_c0_g1:2052	si_a805	TRINITY_DN4255_c0_g1	2039	2061	2052	-36.30	-24.40	0.672176308539945	8	1-2,2061-2060;4-10,2058-2052;11-12,2050-2049;13-20,2047-2040	3-3,2059-2059[SIL];x-x,2051-2051[BULt];x-x,2048-2048[BULt];21-21,2039-2039[UP3]	.((((((((.((.(((((((.((&)).)))))))-))-)))))))).	GUCUUCUUCUGCAUUCGGGUCGG&CCAAUCCGAA-GC-GAAGAAGAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a805_TRINITY_DN4255_c0_g1_2052_TPlot.pdf
TRINITY_DN4255_c0_g1:905	si_s641	TRINITY_DN4255_c0_g1	892	914	905	-39.20	-26.90	0.686224489795918	9.5	1-12,914-903;13-14,900-899;16-20,897-893	x-x,902-901[BULt];15-15,898-898[SIL];21-21,892-892[UP3]	.(((((.((..((((((((((((&))))))))))))--)).))))).	AUGUAUGGGGUGGGUGAGCGCCU&AGGCGUUUGCCC--UCGAUACAA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN4255_c0_g1_905_TPlot.pdf
TRINITY_DN4255_c0_g1:906	si_s640	TRINITY_DN4255_c0_g1	893	915	906	-39.50	-26.70	0.675949367088608	7.5	2-13,914-903;14-15,900-899;17-21,897-893	1-1,915-915[UP5];x-x,902-901[BULt];16-16,898-898[SIL]	(((((.((..((((((((((((.&.))))))))))))--)).)))))	UGUAUGGGGUGGGUGAGCGCCUC&UAGGCGUUUGCCC--UCGAUACA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s640_TRINITY_DN4255_c0_g1_906_TPlot.pdf
TRINITY_DN42562_c0_g1:676	si_a868	TRINITY_DN42562_c0_g1	664	685	676	-24.80	-16.50	0.665322580645161	11.5	6-18,680-668;19-20,666-665	1-5,685-681[UP5];x-x,667-667[BULt];21-21,664-664[UP3]	.((.(((((((((((((.....&.....)))))))))))))-)).	AGCAAACUGAAUCUUUAUCUGA&AUUAUUAAAGAUUUAGUU-GCA	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN42562_c0_g1_676_TPlot.pdf
TRINITY_DN42562_c0_g1:677	si_a867	TRINITY_DN42562_c0_g1	665	686	677	-24.10	-16.00	0.663900414937759	12.5	7-19,680-668;20-21,666-665	1-6,686-681[UP5];x-x,667-667[BULt]	((.(((((((((((((......&......)))))))))))))-))	GCAAACUGAAUCUUUAUCUGAA&AAUUAUUAAAGAUUUAGUU-GC	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN42562_c0_g1_677_TPlot.pdf
TRINITY_DN4256_c0_g1:4089	si_a363	TRINITY_DN4256_c0_g1	4078	4098	4089	-26.40	-18.10	0.685606060606061	7	1-13,4098-4086;15-15,4084-4084	14-14,4085-4085[SIL];16-21,4083-4078[UP3]	......(.(((((((((((((&))))))))))))).)......	CAGAUAGUUCCGAUCAAAAUA&UAUUUUGAUCGGAUCAAAAAU	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN4256_c0_g1_4089_TPlot.pdf
TRINITY_DN4256_c0_g2:618	si_s199	TRINITY_DN4256_c0_g2	601	627	618	-31.20	-20.40	0.653846153846154	16	1-10,627-618;11-15,612-608;16-21,606-601	x-x,617-613[BULt];x-x,607-607[BULt]	((((((.(((((.....((((((((((&))))))))))-----)))))-))))))	GCAGCUGGGUAUCUCGAAUUCCGAGGU&AUUUUGGAAU-----GUACC-AGUUGU	2	0.996972158701439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN4256_c0_g2_618_TPlot.pdf
TRINITY_DN4257_c0_g1:3013	si_a61	TRINITY_DN4257_c0_g1	3002	3023	3013	-32.90	-23.40	0.711246200607903	7.5	1-2,3023-3022;4-5,3020-3019;6-21,3017-3002	3-3,3021-3021[SIL];x-x,3018-3018[BULt]	((((((((((((((((.((.((&)).))-))))))))))))))))	CGAUUUGAAAGGGGCGUGGACG&CGACU-CGCUUCUUUCAAAUUG	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN4257_c0_g1_3013_TPlot.pdf
TRINITY_DN4258_c0_g1:1733	si_s61	TRINITY_DN4258_c0_g1	1722	1743	1733	-26.50	-18.10	0.683018867924528	9	1-4,1743-1740;5-15,1738-1728	x-x,1739-1739[BULt];16-21,1727-1722[UP3]	......(((((((((((.((((&))))-)))))))))))......	CAUCUCAGAAGUUGCUGAACUU&AAGU-UAGCAACUUCUAUUUUU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN4258_c0_g1_1733_TPlot.pdf
TRINITY_DN4258_c0_g1:4457	si_a320	TRINITY_DN4258_c0_g1	4447	4466	4457	-24.40	-16.70	0.684426229508197	4	1-14,4466-4453;16-17,4451-4450;19-21,4449-4447	15-15,4452-4452[SIL];18-18,x-x[BULq]	(((-((.((((((((((((((&)))))))))))))).)).)))	GAA-AACAGAGUCAUGGAUAG&UUAUCCAUGAUUUUUUUAUUC	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN4258_c0_g1_4457_TPlot.pdf
TRINITY_DN4258_c0_g1:4459	si_a318	TRINITY_DN4258_c0_g1	4448	4468	4459	-22.50	-16.90	0.751111111111111	9	2-16,4467-4453	1-1,4468-4468[UP5];17-21,4452-4448[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAACAGAGUCAUGGAUAGGG&AUUUAUCCAUGAUUUUUUUAU	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4258_c0_g1_4459_TPlot.pdf
TRINITY_DN4258_c0_g1:4462	si_a315	TRINITY_DN4258_c0_g1	4451	4474	4462	-27.00	-20.70	0.766666666666667	11	1-4,4474-4471;5-19,4467-4453	x-x,4470-4468[BULt];20-21,4452-4451[UP3]	..(((((((((((((((...((((&))))---)))))))))))))))..	ACAGAGUCAUGGAUAGGGGUUCCA&UGGA---UUUAUCCAUGAUUUUUU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN4258_c0_g1_4462_TPlot.pdf
TRINITY_DN4258_c0_g1:4697	si_s814	TRINITY_DN4258_c0_g1	4685	4706	4697	-26.60	-19.00	0.714285714285714	7	1-13,4706-4694;18-21,4688-4685	14-17,4693-4689[AILt]	((((.....(((((((((((((&)))))))))))))-....))))	UCAUGGACCAAGGAAAGGUAGC&GUUACCUUUUCUU-AAUAAUGA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN4258_c0_g1_4697_TPlot.pdf
TRINITY_DN4258_c0_g1:4700	si_s811	TRINITY_DN4258_c0_g1	4689	4710	4700	-26.40	-17.50	0.662878787878788	9	1-3,4710-4708;4-16,4706-4694	x-x,4707-4707[BULt];17-21,4693-4689[UP3]	.....(((((((((((((.(((&)))-))))))))))))).....	GGACCAAGGAAAGGUAGCAGAG&UUC-GUUACCUUUUCUUAAUAA	3	0.999999366446917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4258_c0_g1_4700_TPlot.pdf
TRINITY_DN4258_c0_g1:4702	si_s809	TRINITY_DN4258_c0_g1	4691	4711	4702	-28.50	-18.60	0.652631578947368	8.5	2-4,4710-4708;6-18,4706-4694	1-1,4711-4711[UP5];5-5,4707-4707[SIL];19-21,4693-4691[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	ACCAAGGAAAGGUAGCAGAGU&UCUUCGUUACCUUUUCUUAAU	2	0.999999931137027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4258_c0_g1_4702_TPlot.pdf
TRINITY_DN4258_c0_g1:4703	si_a783	TRINITY_DN4258_c0_g1	4692	4712	4703	-24.70	-17.10	0.692307692307692	8.5	1-6,4712-4707;8-17,4705-4696	7-7,4706-4706[SIL];18-21,4695-4692[UP3]	....((((((((((.((((((&)))))).))))))))))....	CCAAGGAAAGGUAGCAGAGUU&AACUCUUCUAUUUUUCUAUUU	4	0.999999998959582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4258_c0_g1_4703_TPlot.pdf
TRINITY_DN4258_c0_g1:4704	si_a782	TRINITY_DN4258_c0_g1	4693	4713	4704	-26.40	-17.20	0.651515151515151	8	2-7,4712-4707;9-18,4705-4696	1-1,4713-4713[UP5];8-8,4706-4706[SIL];19-21,4695-4693[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	CAAGGAAAGGUAGCAGAGUUC&CAACUCUUCUAUUUUUCUAUU	3	0.999999999929939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN4258_c0_g1_4704_TPlot.pdf
TRINITY_DN4258_c0_g1:4706	si_a780	TRINITY_DN4258_c0_g1	4695	4716	4706	-27.30	-18.10	0.663003663003663	7.5	2-3,4715-4714;4-9,4712-4707;11-20,4705-4696	1-1,4716-4716[UP5];x-x,4713-4713[BULt];10-10,4706-4706[SIL];21-21,4695-4695[UP3]	.((((((((((.((((((.((.&.))-)))))).)))))))))).	AGGAAAGGUAGCAGAGUUCGAU&UUC-AACUCUUCUAUUUUUCUA	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN4258_c0_g1_4706_TPlot.pdf
TRINITY_DN4258_c0_g1:792	si_s74	TRINITY_DN4258_c0_g1	781	801	792	-25.00	-16.60	0.664	7.5	1-3,801-799;5-13,797-789;16-21,786-781	4-4,798-798[SIL];14-15,788-787[SIL]	((((((..(((((((((.(((&))).)))))))))..))))))	GGAAGGCUAGAAAGGAACUGG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4258_c0_g1_792_TPlot.pdf
TRINITY_DN4258_c0_g1:793	si_s73	TRINITY_DN4258_c0_g1	782	802	793	-24.00	-16.10	0.670833333333333	7.5	1-4,802-799;6-14,797-789;17-21,786-782	5-5,798-798[SIL];15-16,788-787[SIL]	(((((..(((((((((.((((&)))).)))))))))..)))))	GAAGGCUAGAAAGGAACUGGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4258_c0_g1_793_TPlot.pdf
TRINITY_DN4258_c0_g1:863	si_s773	TRINITY_DN4258_c0_g1	852	872	863	-23.10	-15.20	0.658008658008658	10	5-15,868-858;17-20,856-853	1-4,872-869[UP5];16-16,857-857[SIL];21-21,852-852[UP3]	.((((.(((((((((((....&....))))))))))).)))).	AUUUAGAGCAAUAGUGAAGAC&UUAAUUACUAUUGCUAUAAAA	4	0.999999843083262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN4258_c0_g1_863_TPlot.pdf
TRINITY_DN42591_c0_g1:243	si_a794	TRINITY_DN42591_c0_g1	232	251	243	-28.60	-19.12	0.668531468531468	12	2-6,250-246;11-19,242-234	1-1,251-251[UP5];7-10,245-243[AILq];20-21,233-232[UP3]	..(((((((((...-(((((.&.)))))....)))))))))..	GACGGAUUGGAUAG-AGAGAG&UUUUCUAUUUUCCAAUCCGAA	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN42591_c0_g1_243_TPlot.pdf
TRINITY_DN42591_c0_g1:247	si_s74	TRINITY_DN42591_c0_g1	236	256	247	-25.00	-16.60	0.664	9	1-3,256-254;5-13,252-244;15-17,242-240;20-21,237-236	4-4,253-253[SIL];14-14,243-243[SIL];18-19,239-238[SIL]	((..(((.(((((((((.(((&))).))))))))).)))..))	GAUUGGAUAGAGAGAGAUUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN42591_c0_g1_247_TPlot.pdf
TRINITY_DN42591_c0_g1:248	si_s73	TRINITY_DN42591_c0_g1	237	257	248	-24.00	-16.10	0.670833333333333	10	1-4,257-254;6-14,252-244;16-18,242-240	5-5,253-253[SIL];15-15,243-243[SIL];19-21,239-237[UP3]	...(((.(((((((((.((((&)))).))))))))).)))...	AUUGGAUAGAGAGAGAUUGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN42591_c0_g1_248_TPlot.pdf
TRINITY_DN42591_c0_g1:249	si_s72	TRINITY_DN42591_c0_g1	238	258	249	-24.10	-16.50	0.684647302904564	9.5	1-5,258-254;7-15,252-244;17-19,242-240	6-6,253-253[SIL];16-16,243-243[SIL];20-21,239-238[UP3]	..(((.(((((((((.(((((&))))).))))))))).)))..	UUGGAUAGAGAGAGAUUGGAG&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN42591_c0_g1_249_TPlot.pdf
TRINITY_DN42591_c0_g1:251	si_s70	TRINITY_DN42591_c0_g1	240	260	251	-25.80	-19.20	0.744186046511628	8.5	2-7,259-254;9-17,252-244;19-21,242-240	1-1,260-260[UP5];8-8,253-253[SIL];18-18,243-243[SIL]	(((.(((((((((.((((((.&.)))))).))))))))).)))	GGAUAGAGAGAGAUUGGAGGC&ACUUCUAUUUUUUUUCUUUCC	2	0.996211839284778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN42591_c0_g1_251_TPlot.pdf
TRINITY_DN42591_c0_g1:252	si_s69	TRINITY_DN42591_c0_g1	241	261	252	-23.40	-16.10	0.688034188034188	10	3-8,259-254;10-18,252-244;20-21,242-241	1-2,261-260[UP5];9-9,253-253[SIL];19-19,243-243[SIL]	((.(((((((((.((((((..&..)))))).))))))))).))	GAUAGAGAGAGAUUGGAGGCA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN42591_c0_g1_252_TPlot.pdf
TRINITY_DN4259_c0_g1:6085	si_s47	TRINITY_DN4259_c0_g1	6074	6094	6085	-26.30	-17.30	0.657794676806084	8	2-15,6093-6080	1-1,6094-6094[UP5];16-21,6079-6074[UP3]	......((((((((((((((.&.))))))))))))))......	AAUAAAUGAGAUCCAAUUAUA&AAUAAUUGGAUUUCAAGUUAG	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN4259_c0_g1_6085_TPlot.pdf
TRINITY_DN425_c0_g1:643	si_a665	TRINITY_DN425_c0_g1	632	652	643	-29.60	-19.30	0.652027027027027	9	2-9,651-644;11-17,642-636	1-1,652-652[UP5];10-10,643-643[SIL];18-21,635-632[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	CCACAGGAAUCUAUGGGUAUC&AAUGCCUAUUGAUUCCUUAUU	4	0.999998207236256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN425_c0_g1_643_TPlot.pdf
TRINITY_DN4260_c0_g1:1391	si_s504	TRINITY_DN4260_c0_g1	1379	1400	1391	-24.70	-17.60	0.712550607287449	3	1-14,1400-1387;16-19,1385-1382;20-21,1380-1379	15-15,1386-1386[SIL];x-x,1381-1381[BULt]	((.((((.((((((((((((((&)))))))))))))).))))-))	AGAAAUAAAGAGUUGUUUUGUU&AACAAAACAAUUCUAUAUU-CU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN4260_c0_g1_1391_TPlot.pdf
TRINITY_DN4260_c0_g1:1392	si_s503	TRINITY_DN4260_c0_g1	1381	1401	1392	-24.00	-18.00	0.75	3	1-15,1401-1387;17-20,1385-1382	16-16,1386-1386[SIL];21-21,1381-1381[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	AAAUAAAGAGUUGUUUUGUUU&AAACAAAACAAUUCUAUAUUC	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s503_TRINITY_DN4260_c0_g1_1392_TPlot.pdf
TRINITY_DN4260_c0_g1:666	si_s72	TRINITY_DN4260_c0_g1	655	675	666	-24.10	-15.90	0.659751037344398	9	1-6,675-670;9-10,667-666;12-19,664-657	7-8,669-668[SIL];11-11,665-665[SIL];20-21,656-655[UP3]	..((((((((.((..((((((&))))))..)).))))))))..	GCGGAAAGAACAAUUGUAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4260_c0_g1_666_TPlot.pdf
TRINITY_DN4260_c0_g1:667	si_s71	TRINITY_DN4260_c0_g1	656	676	667	-25.70	-18.20	0.708171206225681	8	1-7,676-670;10-11,667-666;13-20,664-657	8-9,669-668[SIL];12-12,665-665[SIL];21-21,656-656[UP3]	.((((((((.((..(((((((&)))))))..)).)))))))).	CGGAAAGAACAAUUGUAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4260_c0_g1_667_TPlot.pdf
TRINITY_DN4260_c0_g1:668	si_s70	TRINITY_DN4260_c0_g1	657	677	668	-25.80	-18.50	0.717054263565891	7	2-8,676-670;11-12,667-666;14-21,664-657	1-1,677-677[UP5];9-10,669-668[SIL];13-13,665-665[SIL]	((((((((.((..(((((((.&.)))))))..)).))))))))	GGAAAGAACAAUUGUAGAAGC&ACUUCUAUUUUUUUUCUUUCC	3	0.999999987265962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4260_c0_g1_668_TPlot.pdf
TRINITY_DN4261_c0_g1:1103	si_a783	TRINITY_DN4261_c0_g1	1092	1112	1103	-24.70	-16.20	0.65587044534413	7	3-15,1110-1098;18-21,1095-1092	1-2,1112-1111[UP5];16-17,1097-1096[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GAAUCUAGAAGUAGAAGAGAU&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4261_c0_g1_1103_TPlot.pdf
TRINITY_DN4261_c0_g1:550	si_s96	TRINITY_DN4261_c0_g1	540	563	550	-37.20	-24.80	0.666666666666667	11	1-9,563-555;10-15,550-545;17-20,544-541	x-x,554-551[BULt];16-16,x-x[BULq];21-21,540-540[UP3]	.((((-((((((....(((((((((&)))))))))----)))))).)))).	ACCAA-CCGAGGAAGCCGAAGAAGA&UCUUCUUCG----CUUCGGAUUGGA	2	0.988388058632615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN4261_c0_g1_550_TPlot.pdf
TRINITY_DN4261_c0_g1:552	si_a503	TRINITY_DN4261_c0_g1	541	561	552	-32.10	-22.10	0.688473520249221	7.5	1-7,561-555;9-17,553-545	8-8,554-554[SIL];18-21,544-541[UP3]	....(((((((((.(((((((&))))))).)))))))))....	CCAACCGAGGAAGCCGAAGAA&UUUUUCGUCUUCCUUGGAAUG	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN4261_c0_g1_552_TPlot.pdf
TRINITY_DN4261_c0_g1:553	si_a502	TRINITY_DN4261_c0_g1	542	562	553	-32.10	-22.10	0.688473520249221	7.5	2-8,561-555;10-18,553-545	1-1,562-562[UP5];9-9,554-554[SIL];19-21,544-542[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	CAACCGAGGAAGCCGAAGAAG&GUUUUUCGUCUUCCUUGGAAU	3	0.999999618066212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN4261_c0_g1_553_TPlot.pdf
TRINITY_DN4261_c0_g1:554	si_a501	TRINITY_DN4261_c0_g1	543	563	554	-33.50	-22.10	0.659701492537313	8.5	3-9,561-555;11-19,553-545	1-2,563-562[UP5];10-10,554-554[SIL];20-21,544-543[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AACCGAGGAAGCCGAAGAAGA&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999995625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4261_c0_g1_554_TPlot.pdf
TRINITY_DN4261_c0_g1:980	si_s75	TRINITY_DN4261_c0_g1	969	989	980	-24.00	-16.40	0.683333333333333	10	4-18,986-972	1-3,989-987[UP5];19-21,971-969[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGCAAGGAAAGAGAAAAGCCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4261_c0_g1_980_TPlot.pdf
TRINITY_DN4261_c0_g1:981	si_s74	TRINITY_DN4261_c0_g1	970	990	981	-25.00	-16.40	0.656	11	5-19,986-972	1-4,990-987[UP5];20-21,971-970[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCAAGGAAAGAGAAAAGCCAU&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4261_c0_g1_981_TPlot.pdf
TRINITY_DN4261_c0_g1:982	si_s73	TRINITY_DN4261_c0_g1	971	991	982	-24.00	-16.40	0.683333333333333	12	6-20,986-972	1-5,991-987[UP5];21-21,971-971[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAAGGAAAGAGAAAAGCCAUA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4261_c0_g1_982_TPlot.pdf
TRINITY_DN4261_c0_g1:983	si_s72	TRINITY_DN4261_c0_g1	972	995	983	-24.10	-16.70	0.692946058091286	8	1-4,995-992;5-6,990-989;7-21,986-972	x-x,991-991[BULt];x-x,988-987[BULt]	(((((((((((((((..((.((((&))))-))--)))))))))))))))	AAGGAAAGAGAAAAGCCAUAAGAA&UUCU-AU--UUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4261_c0_g1_983_TPlot.pdf
TRINITY_DN4264_c1_g1:527	si_a763	TRINITY_DN4264_c1_g1	516	547	527	-28.80	-19.20	0.666666666666667	24.5	1-7,547-541;8-20,529-517	x-x,540-530[BULt];21-21,516-516[UP3]	.(((((((((((((...........(((((((&)))))))-----------))))))))))))).	AGAAUUAAUCAAAAUUUGAUCAGGCGCCCAAA&UUUGGGU-----------UUUUGAUUGAUUCA	3	0.999999994099649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN4264_c1_g1_527_TPlot.pdf
TRINITY_DN4268_c0_g1:1055	si_a498	TRINITY_DN4268_c0_g1	1041	1064	1055	-33.50	-21.92	0.654328358208955	10	1-14,1064-1051;17-18,1045-1044	15-16,1050-1046[AILt];19-21,1043-1041[UP3]	...((.....((((((((((((((&))))))))))))))---..))...	AGCGGUUCGCGACGAGAGACGACA&UGUCGUUUUUCGUC---UUCCUUG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4268_c0_g1_1055_TPlot.pdf
TRINITY_DN4268_c0_g1:1161	si_a560	TRINITY_DN4268_c0_g1	1150	1170	1161	-36.60	-25.20	0.688524590163934	6.5	1-9,1170-1162;11-15,1160-1156;18-21,1153-1150	10-10,1161-1161[SIL];16-17,1155-1154[SIL]	((((..(((((.(((((((((&))))))))).)))))..))))	ACGAGCCGCGGCGAGAUGGAG&CUUUAUCUCCCCGUGAAUCGU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN4268_c0_g1_1161_TPlot.pdf
TRINITY_DN4268_c0_g1:3306	si_s537	TRINITY_DN4268_c0_g1	3295	3315	3306	-26.40	-19.30	0.731060606060606	11	4-16,3312-3300	1-3,3315-3313[UP5];17-21,3299-3295[UP3]	.....(((((((((((((...&...))))))))))))).....	UGAGAUGAUCGGGUCAAACCG&AUUUUUGAUCCGAUCAAAAUA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN4268_c0_g1_3306_TPlot.pdf
TRINITY_DN4268_c0_g1:3310	si_s533	TRINITY_DN4268_c0_g1	3299	3321	3310	-28.80	-23.70	0.822916666666667	7.5	1-7,3321-3315;8-20,3312-3300	x-x,3314-3313[BULt];21-21,3299-3299[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	AUGAUCGGGUCAAACCGGUGAUU&AAUCAUU--UUUGAUCCGAUCAA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN4268_c0_g1_3310_TPlot.pdf
TRINITY_DN4268_c0_g1:4484	si_s621	TRINITY_DN4268_c0_g1	4473	4493	4484	-32.50	-26.10	0.803076923076923	8.5	4-20,4490-4474	1-3,4493-4491[UP5];21-21,4473-4473[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGCGAAGGGAUCGUUUGGCGA&AAUCCAAGCGAUCUUUUCGUA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN4268_c0_g1_4484_TPlot.pdf
TRINITY_DN4268_c0_g1:4485	si_s620	TRINITY_DN4268_c0_g1	4474	4494	4485	-32.10	-25.70	0.800623052959502	9.5	5-21,4490-4474	1-4,4494-4491[UP5]	(((((((((((((((((....&....)))))))))))))))))	GCGAAGGGAUCGUUUGGCGAG&AAAUCCAAGCGAUCUUUUCGU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN4268_c0_g1_4485_TPlot.pdf
TRINITY_DN4268_c0_g1:4487	si_s618	TRINITY_DN4268_c0_g1	4476	4496	4487	-30.30	-21.70	0.716171617161716	13	7-21,4490-4476	1-6,4496-4491[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGGGAUCGUUUGGCGAGUC&UUAAAUCCAAGCGAUCUUUUC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN4268_c0_g1_4487_TPlot.pdf
TRINITY_DN4268_c0_g1:4488	si_s617	TRINITY_DN4268_c0_g1	4477	4497	4488	-28.30	-18.40	0.65017667844523	15	8-21,4490-4477	1-7,4497-4491[UP5]	((((((((((((((.......&.......))))))))))))))	AAGGGAUCGUUUGGCGAGUCC&UUUAAAUCCAAGCGAUCUUUU	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN4268_c0_g1_4488_TPlot.pdf
TRINITY_DN4269_c0_g1:1495	si_a22	TRINITY_DN4269_c0_g1	1484	1504	1495	-23.50	-15.36	0.653617021276596	10	1-7,1504-1498;12-20,1493-1485	8-11,1497-1494[SIL];21-21,1484-1484[UP3]	.(((((((((....(((((((&)))))))....))))))))).	UUUAGAACUAUUUUUAAAUGG&CUAUUUAUUUUUAGUUCUAAG	4	0.99999952162128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN4269_c0_g1_1495_TPlot.pdf
TRINITY_DN4270_c0_g1:2584	si_a635	TRINITY_DN4270_c0_g1	2573	2596	2584	-26.10	-17.60	0.674329501915709	11	1-9,2596-2588;10-17,2584-2577	x-x,2587-2585[BULt];18-21,2576-2573[UP3]	....((((((((...(((((((((&)))))))))---))))))))....	ACGCCUCAAAGAUGUAAUCGACAU&AUGUCGAUU---UUUUUGAGUAAU	3	0.999999994981852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4270_c0_g1_2584_TPlot.pdf
TRINITY_DN4270_c0_g1:3506	si_a547	TRINITY_DN4270_c0_g1	3495	3514	3506	-26.90	-17.50	0.650557620817844	9	3-6,3512-3509;8-20,3508-3496	1-2,3514-3513[UP5];7-7,x-x[BULq];21-21,3495-3495[UP3]	.(((((((((((((-((((..&..)))).))))))))))))).	CGAUGGAGAGAUAG-UUGGUC&GUUCAAUCUAUUUCUUUAUCU	2	0.999837486637986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN4270_c0_g1_3506_TPlot.pdf
TRINITY_DN4270_c0_g1:605	si_a408	TRINITY_DN4270_c0_g1	594	614	605	-20.10	-14.40	0.716417910447761	8	1-16,614-599	17-21,598-594[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACACCGGAUAUGAAUAAAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4270_c0_g1_605_TPlot.pdf
TRINITY_DN4271_c0_g1:2736	si_a409	TRINITY_DN4271_c0_g1	2725	2745	2736	-19.50	-13.60	0.697435897435897	8	1-15,2745-2731	16-21,2730-2725[UP3]	......(((((((((((((((&)))))))))))))))......	CCUGGAAAAUAUGAAUAAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4271_c0_g1_2736_TPlot.pdf
TRINITY_DN4271_c0_g1:4868	si_s76	TRINITY_DN4271_c0_g1	4857	4877	4868	-23.60	-18.40	0.779661016949152	6.5	2-10,4876-4868;12-19,4866-4859	1-1,4877-4877[UP5];11-11,4867-4867[SIL];20-21,4858-4857[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	GUGAGAGGAAUGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.999998434278545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4271_c0_g1_4868_TPlot.pdf
TRINITY_DN4271_c0_g1:5510	si_s482	TRINITY_DN4271_c0_g1	5499	5519	5510	-21.20	-14.60	0.688679245283019	7.5	1-11,5519-5509;13-18,5507-5502	12-12,5508-5508[SIL];19-21,5501-5499[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UGUUUUAGAAAGAUAUGGGAU&AUCCUAUAUUUAUUUAAAUAU	4	0.998853101299611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN4271_c0_g1_5510_TPlot.pdf
TRINITY_DN42762_c0_g1:22	si_s450	TRINITY_DN42762_c0_g1	11	31	22	-25.20	-17.00	0.674603174603175	6.5	1-10,31-22;12-16,20-16;18-21,14-11	11-11,21-21[SIL];17-17,15-15[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	GAGGAAAUUGGUGUUGUGUGU&AUAUAUAACAACAAUUAUCUC	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s450_TRINITY_DN42762_c0_g1_22_TPlot.pdf
TRINITY_DN42774_c0_g1:125	si_s312	TRINITY_DN42774_c0_g1	114	134	125	-29.00	-19.00	0.655172413793103	11	5-15,130-120;17-20,118-115	1-4,134-131[UP5];16-16,119-119[SIL];21-21,114-114[UP3]	.((((.(((((((((((....&....))))))))))).)))).	CAAUAUGAGGGACAGAGCAAA&AAAAUUCUGUCCUUCUUGUUA	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN42774_c0_g1_125_TPlot.pdf
TRINITY_DN42774_c0_g1:212	si_a68	TRINITY_DN42774_c0_g1	201	223	212	-25.40	-16.90	0.665354330708661	8.5	1-9,223-215;10-18,212-204;20-20,202-202	x-x,214-213[BULt];19-19,203-203[SIL];21-21,201-201[UP3]	.(.(((((((((..(((((((((&)))))))))--))))))))).).	GGUGAAACAGUUGCUGGAAGAAG&CUUCUUUCA--AAUUGUUUUUCA	4	0.99999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN42774_c0_g1_212_TPlot.pdf
TRINITY_DN42774_c0_g1:215	si_a67	TRINITY_DN42774_c0_g1	202	224	215	-27.20	-20.80	0.764705882352941	7	1-10,224-215;11-19,212-204;21-21,202-202	x-x,214-213[BULt];20-20,203-203[SIL]	(.(((((((((..((((((((((&))))))))))--))))))))).)	GUGAAACAGUUGCUGGAAGAAGC&GCUUCUUUCA--AAUUGUUUUUC	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN42774_c0_g1_215_TPlot.pdf
TRINITY_DN4277_c1_g1:1259	si_a326	TRINITY_DN4277_c1_g1	1248	1270	1259	-26.20	-17.50	0.66793893129771	9	2-5,1269-1266;6-19,1263-1250	1-1,1270-1270[UP5];x-x,1265-1264[BULt];20-21,1249-1248[UP3]	..((((((((((((((..((((.&.))))--))))))))))))))..	UUCAAGGAAUAAGAAAUAGUCAC&AUGAU--UUUUUUAUUCCUUGUC	4	0.99999999842781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4277_c1_g1_1259_TPlot.pdf
TRINITY_DN4278_c0_g1:1066	si_a72	TRINITY_DN4278_c0_g1	1055	1075	1066	-21.90	-16.40	0.748858447488584	8.5	2-16,1074-1060	1-1,1075-1075[UP5];17-21,1059-1055[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAGAGAAGAACGAUUUGGAC&UUUCAAAUUGUUUUUCAUUAU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4278_c0_g1_1066_TPlot.pdf
TRINITY_DN4278_c0_g1:1264	si_s798	TRINITY_DN4278_c0_g1	1251	1273	1264	-29.30	-19.30	0.658703071672355	13.5	1-11,1273-1263;13-19,1259-1253	12-12,1262-1260[AILt];20-21,1252-1251[UP3]	..(((((((...(((((((((((&)))))))))))--.)))))))..	UGGGCGAGGCAUUGAGAUGCGGG&CUCGUAUUUUA--UCUUCGUUAC	4	0.999967071746998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4278_c0_g1_1264_TPlot.pdf
TRINITY_DN4278_c0_g1:1388	si_a375	TRINITY_DN4278_c0_g1	1377	1397	1388	-24.00	-15.90	0.6625	6.5	1-5,1397-1393;7-20,1391-1378	6-6,1392-1392[SIL];21-21,1377-1377[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CGAUUUGAGAUUAUUGUUGGU&AUCAAAAAUGAUUUCGAAUUA	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN4278_c0_g1_1388_TPlot.pdf
TRINITY_DN4278_c0_g1:1389	si_s455	TRINITY_DN4278_c0_g1	1378	1398	1389	-27.30	-18.30	0.67032967032967	8	4-10,1395-1389;12-17,1387-1382;19-21,1380-1378	1-3,1398-1396[UP5];11-11,1388-1388[SIL];18-18,1381-1381[SIL]	(((.((((((.(((((((...&...))))))).)))))).)))	GAUUUGAGAUUAUUGUUGGUU&UAACAACAAUUAUCUCAUAUC	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s455_TRINITY_DN4278_c0_g1_1389_TPlot.pdf
TRINITY_DN4278_c0_g1:1466	si_a784	TRINITY_DN4278_c0_g1	1455	1475	1466	-24.70	-16.96	0.68663967611336	9.5	1-7,1475-1469;12-20,1464-1456	8-11,1468-1465[SIL];21-21,1455-1455[UP3]	.(((((((((....(((((((&)))))))....))))))))).	UGAAUAGAAAUCUUGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999999920044325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4278_c0_g1_1466_TPlot.pdf
TRINITY_DN4278_c0_g1:1467	si_a783	TRINITY_DN4278_c0_g1	1456	1476	1467	-24.70	-17.86	0.723076923076923	8.5	1-8,1476-1469;13-21,1464-1456	9-12,1468-1465[SIL]	(((((((((....((((((((&))))))))....)))))))))	GAAUAGAAAUCUUGAAGAGUU&AACUCUUCUAUUUUUCUAUUU	2	0.999071824285151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4278_c0_g1_1467_TPlot.pdf
TRINITY_DN427_c0_g1:1233	si_a534	TRINITY_DN427_c0_g1	1222	1243	1233	-39.70	-26.20	0.659949622166247	10.5	3-9,1241-1235;10-17,1233-1226	1-2,1243-1242[UP5];x-x,1234-1234[BULt];18-21,1225-1222[UP3]	....((((((((.(((((((..&..)))))))-))))))))....	GCGCGAGCCGAUACGCUUGCAU&ACGCGAGCG-AUCGGUUCAAUC	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a534_TRINITY_DN427_c0_g1_1233_TPlot.pdf
TRINITY_DN427_c0_g1:1706	si_a638	TRINITY_DN427_c0_g1	1695	1715	1706	-24.40	-16.40	0.672131147540984	10.5	1-5,1715-1711;7-15,1709-1701	6-6,1710-1710[SIL];16-21,1700-1695[UP3]	......(((((((((.(((((&))))).)))))))))......	GCUGCAGCUCAGAGAUAUCGA&UCGAUUUUUUUGAGUAAUAUA	2	0.999190583655494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN427_c0_g1_1706_TPlot.pdf
TRINITY_DN427_c0_g1:1711	si_a633	TRINITY_DN427_c0_g1	1700	1720	1711	-26.40	-17.80	0.674242424242424	8.5	1-3,1720-1718;6-10,1715-1711;12-20,1709-1701	4-5,1717-1716[SIL];11-11,1710-1710[SIL];21-21,1700-1700[UP3]	.(((((((((.(((((..(((&)))..))))).))))))))).	AGCUCAGAGAUAUCGAGCUAA&UUAUGUCGAUUUUUUUGAGUA	4	0.999999836469413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN427_c0_g1_1711_TPlot.pdf
TRINITY_DN427_c0_g1:1712	si_a632	TRINITY_DN427_c0_g1	1701	1721	1712	-26.10	-17.30	0.662835249042146	8.5	2-4,1720-1718;7-11,1715-1711;13-21,1709-1701	1-1,1721-1721[UP5];5-6,1717-1716[SIL];12-12,1710-1710[SIL]	(((((((((.(((((..(((.&.)))..))))).)))))))))	GCUCAGAGAUAUCGAGCUAAG&AUUAUGUCGAUUUUUUUGAGU	2	0.999987944570732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN427_c0_g1_1712_TPlot.pdf
TRINITY_DN427_c0_g1:1976	si_a301	TRINITY_DN427_c0_g1	1961	1985	1976	-27.80	-18.20	0.654676258992806	14.5	6-15,1980-1971;16-20,1966-1962	1-5,1985-1981[UP5];x-x,1970-1967[BULt];21-21,1961-1961[UP3]	.(((((....((((((((((.....&.....))))))))))----))))).	CGAUCCGAUUAAGCGAAUCUACCGA&AAAAAAGAUUCGCUU----GGAUUU	4	0.999999550347238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN427_c0_g1_1976_TPlot.pdf
TRINITY_DN427_c0_g1:1991	si_a451	TRINITY_DN427_c0_g1	1980	2001	1991	-23.60	-15.40	0.652542372881356	9.5	1-6,2001-1996;7-16,1994-1985	x-x,1995-1995[BULt];17-21,1984-1980[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	UACCGAUGACGACAAUUUGUCU&AGAUAA-UUGUUGUUAUAUAUA	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN427_c0_g1_1991_TPlot.pdf
TRINITY_DN427_c0_g1:1998	si_a445	TRINITY_DN427_c0_g1	1986	2006	1998	-27.30	-18.30	0.67032967032967	7	1-5,2006-2002;7-12,2001-1996;13-21,1994-1986	6-6,x-x[BULq];x-x,1995-1995[BULt]	(((((((((.((((((-(((((&))))).))))))-)))))))))	UGACGACAAUUUGUCU-GUAUC&GAUAUGAGAUAA-UUGUUGUUA	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN427_c0_g1_1998_TPlot.pdf
TRINITY_DN427_c0_g1:2053	si_a633	TRINITY_DN427_c0_g1	2040	2062	2053	-26.40	-19.60	0.742424242424243	8	1-10,2062-2053;11-20,2050-2041	x-x,2052-2051[BULt];21-21,2040-2040[UP3]	.((((((((((..((((((((((&))))))))))--)))))))))).	AACUCAGGAAGCCAUCGAUAUAA&UUAUGUCGAU--UUUUUUGAGUA	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN427_c0_g1_2053_TPlot.pdf
TRINITY_DN427_c0_g1:967	si_a149	TRINITY_DN427_c0_g1	948	976	967	-29.40	-19.50	0.663265306122449	23	2-11,975-966;12-18,957-951	1-1,976-976[UP5];x-x,965-958[BULt];19-21,950-948[UP3]	...(((((((........((((((((((.&.))))))))))--------)))))))...	AAGGACCUUACUGGAAAAGAACAGCAGCU&CGUUGUUGUUU--------UAAGGUCAAU	4	0.999999861362699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN427_c0_g1_967_TPlot.pdf
TRINITY_DN4280_c0_g2:1717	si_a139	TRINITY_DN4280_c0_g2	1706	1727	1717	-25.90	-17.00	0.656370656370656	4	1-9,1727-1719;10-21,1717-1706	x-x,1718-1718[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	GAGUAAUAACGACUUAAUUACU&AGUAAUUAA-UCGUUGUUGUUU	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN4280_c0_g2_1717_TPlot.pdf
TRINITY_DN4280_c0_g2:1870	si_a756	TRINITY_DN4280_c0_g2	1859	1881	1870	-33.10	-21.66	0.654380664652568	14.5	2-8,1880-1874;12-19,1868-1861	1-1,1881-1881[UP5];9-11,1873-1869[AILt];20-21,1860-1859[UP3]	..((((((((.....(((((((.&.)))))))--...))))))))..	UACAAAAGCCAUAUUGGGAGGUG&AACCUCCU--UUGGGUUUUUGAU	3	0.999999999795148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4280_c0_g2_1870_TPlot.pdf
TRINITY_DN4281_c0_g1:1163	si_s96	TRINITY_DN4281_c0_g1	1151	1172	1163	-37.20	-25.70	0.690860215053763	7.5	1-15,1172-1158;17-20,1155-1152	16-16,1157-1156[AILt];21-21,1151-1151[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	CCCGAGCCUGAAGUGGAGGAGG&UCUUCUUCGCUUCGG-AUUGGA	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN4281_c0_g1_1163_TPlot.pdf
TRINITY_DN4281_c0_g1:5465	si_s480	TRINITY_DN4281_c0_g1	5454	5474	5465	-25.00	-18.70	0.748	10	1-13,5474-5462	14-21,5461-5454[UP3]	........(((((((((((((&)))))))))))))........	GUCAUCAAAAGUAUGGGAUCC&GGAUCCUAUAUUUAUUUAAAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN4281_c0_g1_5465_TPlot.pdf
TRINITY_DN4281_c0_g1:5466	si_s479	TRINITY_DN4281_c0_g1	5455	5475	5466	-26.40	-20.20	0.765151515151515	9	1-14,5475-5462	15-21,5461-5455[UP3]	.......((((((((((((((&)))))))))))))).......	UCAUCAAAAGUAUGGGAUCCG&CGGAUCCUAUAUUUAUUUAAA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN4281_c0_g1_5466_TPlot.pdf
TRINITY_DN4281_c0_g1:5471	si_s474	TRINITY_DN4281_c0_g1	5460	5480	5471	-31.80	-20.80	0.654088050314465	12	6-19,5475-5462	1-5,5480-5476[UP5];20-21,5461-5460[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAAGUAUGGGAUCCGCGAGC&UCCAACGGAUCCUAUAUUUAU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN4281_c0_g1_5471_TPlot.pdf
TRINITY_DN4281_c0_g1:5472	si_s473	TRINITY_DN4281_c0_g1	5461	5481	5472	-31.80	-20.80	0.654088050314465	13	7-20,5475-5462	1-6,5481-5476[UP5];21-21,5461-5461[UP3]	.((((((((((((((......&......)))))))))))))).	AAAGUAUGGGAUCCGCGAGCU&AUCCAACGGAUCCUAUAUUUA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN4281_c0_g1_5472_TPlot.pdf
TRINITY_DN4281_c0_g1:7868	si_s74	TRINITY_DN4281_c0_g1	7857	7881	7868	-25.00	-16.80	0.672	15	1-7,7881-7875;8-19,7870-7859	x-x,7874-7871[BULt];20-21,7858-7857[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	AUGAGGGAAGAAGAACUUGAAGUGG&CUAUUUU----UUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4281_c0_g1_7868_TPlot.pdf
TRINITY_DN4281_c0_g1:7869	si_s73	TRINITY_DN4281_c0_g1	7858	7882	7869	-24.00	-16.80	0.7	15	2-8,7881-7875;9-20,7870-7859	1-1,7882-7882[UP5];x-x,7874-7871[BULt];21-21,7858-7858[UP3]	.((((((((((((....(((((((.&.)))))))----)))))))))))).	UGAGGGAAGAAGAACUUGAAGUGGC&UCUAUUUU----UUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4281_c0_g1_7869_TPlot.pdf
TRINITY_DN4281_c0_g1:828	si_a319	TRINITY_DN4281_c0_g1	817	841	828	-22.40	-14.90	0.665178571428572	13	1-9,841-833;10-18,828-820	x-x,832-829[BULt];19-21,819-817[UP3]	...(((((((((....(((((((((&)))))))))----)))))))))...	GAAAGAAGAAUCGAAAGUGGAUAAA&UUUAUCCAU----GAUUUUUUUAUU	3	0.999999999999969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4281_c0_g1_828_TPlot.pdf
TRINITY_DN4281_c0_g1:8393	si_a450	TRINITY_DN4281_c0_g1	8382	8402	8393	-25.20	-17.90	0.71031746031746	8.5	1-15,8402-8388	16-21,8387-8382[UP3]	......(((((((((((((((&)))))))))))))))......	CCUCGAGACAACGAUUAUUUC&GAGAUAAUUGUUGUUAUAUAU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN4281_c0_g1_8393_TPlot.pdf
TRINITY_DN4281_c0_g1:8394	si_a449	TRINITY_DN4281_c0_g1	8383	8403	8394	-25.70	-18.70	0.727626459143969	7.5	1-16,8403-8388	17-21,8387-8383[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUCGAGACAACGAUUAUUUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN4281_c0_g1_8394_TPlot.pdf
TRINITY_DN4281_c0_g1:8395	si_a448	TRINITY_DN4281_c0_g1	8384	8404	8395	-25.50	-20.00	0.784313725490196	6.5	1-17,8404-8388	18-21,8387-8384[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCGAGACAACGAUUAUUUCAU&AUGAGAUAAUUGUUGUUAUAU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN4281_c0_g1_8395_TPlot.pdf
TRINITY_DN4281_c0_g1:8396	si_a447	TRINITY_DN4281_c0_g1	8385	8405	8396	-25.70	-20.80	0.809338521400778	6	1-18,8405-8388	19-21,8387-8385[UP3]	...((((((((((((((((((&))))))))))))))))))...	CGAGACAACGAUUAUUUCAUG&UAUGAGAUAAUUGUUGUUAUA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN4281_c0_g1_8396_TPlot.pdf
TRINITY_DN4281_c0_g1:8397	si_a446	TRINITY_DN4281_c0_g1	8386	8406	8397	-25.50	-20.80	0.815686274509804	6	2-19,8405-8388	1-1,8406-8406[UP5];20-21,8387-8386[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GAGACAACGAUUAUUUCAUGC&AUAUGAGAUAAUUGUUGUUAU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN4281_c0_g1_8397_TPlot.pdf
TRINITY_DN4281_c0_g1:8398	si_a445	TRINITY_DN4281_c0_g1	8387	8407	8398	-27.30	-20.80	0.761904761904762	7	3-20,8405-8388	1-2,8407-8406[UP5];21-21,8387-8387[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGACAACGAUUAUUUCAUGCC&GAUAUGAGAUAAUUGUUGUUA	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN4281_c0_g1_8398_TPlot.pdf
TRINITY_DN4281_c0_g1:8399	si_a444	TRINITY_DN4281_c0_g1	8388	8408	8399	-29.30	-23.10	0.78839590443686	5	1-2,8408-8407;4-21,8405-8388	3-3,8406-8406[SIL]	((((((((((((((((((.((&)).))))))))))))))))))	GACAACGAUUAUUUCAUGCCC&GGAUAUGAGAUAAUUGUUGUU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN4281_c0_g1_8399_TPlot.pdf
TRINITY_DN4281_c0_g1:8400	si_a443	TRINITY_DN4281_c0_g1	8389	8409	8400	-30.00	-22.00	0.733333333333333	5.5	2-3,8408-8407;5-21,8405-8389	1-1,8409-8409[UP5];4-4,8406-8406[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	ACAACGAUUAUUUCAUGCCCC&UGGAUAUGAGAUAAUUGUUGU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN4281_c0_g1_8400_TPlot.pdf
TRINITY_DN4281_c0_g1:8401	si_a442	TRINITY_DN4281_c0_g1	8390	8410	8401	-29.30	-20.70	0.706484641638225	7.5	3-4,8408-8407;6-21,8405-8390	1-2,8410-8409[UP5];5-5,8406-8406[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	CAACGAUUAUUUCAUGCCCCC&UUGGAUAUGAGAUAAUUGUUG	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN4281_c0_g1_8401_TPlot.pdf
TRINITY_DN4281_c0_g1:856	si_a602	TRINITY_DN4281_c0_g1	845	868	856	-30.80	-22.40	0.727272727272727	10	1-7,868-862;8-11,858-855;13-21,853-845	x-x,861-859[BULt];12-12,854-854[SIL]	(((((((((.((((...(((((((&)))))))---)))).)))))))))	CGGUUGGAGAUGCGUAAAAAGUUC&GAAUUUU---CGCAAUUCCAAUCG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN4281_c0_g1_856_TPlot.pdf
TRINITY_DN4281_c0_g1:857	si_a601	TRINITY_DN4281_c0_g1	846	869	857	-30.00	-20.10	0.67	10	2-8,868-862;9-12,858-855;14-21,853-846	1-1,869-869[UP5];x-x,861-859[BULt];13-13,854-854[SIL]	((((((((.((((...(((((((.&.)))))))---)))).))))))))	GGUUGGAGAUGCGUAAAAAGUUCA&AGAAUUUU---CGCAAUUCCAAUC	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN4281_c0_g1_857_TPlot.pdf
TRINITY_DN4281_c0_g1:949	si_a21	TRINITY_DN4281_c0_g1	938	958	949	-24.30	-15.90	0.654320987654321	10	3-19,956-940	1-2,958-957[UP5];20-21,939-938[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAGGAAUUAGAGAUGAGUAUA&CCUAUUUAUUUUUAGUUCUAA	4	0.999999980084876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN4281_c0_g1_949_TPlot.pdf
TRINITY_DN4281_c1_g1:179	si_a756	TRINITY_DN4281_c1_g1	168	188	179	-33.10	-22.60	0.682779456193353	9.5	3-7,186-182;9-18,180-171	1-2,188-187[UP5];8-8,181-181[SIL];19-21,170-168[UP3]	...((((((((((.(((((..&..))))).))))))))))...	CCGAAAGACCCAAUGGGGGAU&AACCUCCUUUGGGUUUUUGAU	2	0.998895147471782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4281_c1_g1_179_TPlot.pdf
TRINITY_DN4281_c1_g1:180	si_a755	TRINITY_DN4281_c1_g1	169	190	180	-34.90	-24.00	0.687679083094556	7.5	1-3,190-188;4-8,186-182;10-19,180-171	x-x,187-187[BULt];9-9,181-181[SIL];20-21,170-169[UP3]	..((((((((((.(((((.(((&)))-))))).))))))))))..	CGAAAGACCCAAUGGGGGAUUC&GAA-CCUCCUUUGGGUUUUUGA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN4281_c1_g1_180_TPlot.pdf
TRINITY_DN4281_c1_g1:181	si_a754	TRINITY_DN4281_c1_g1	170	191	181	-34.60	-24.00	0.69364161849711	7.5	2-4,190-188;5-9,186-182;11-20,180-171	1-1,191-191[UP5];x-x,187-187[BULt];10-10,181-181[SIL];21-21,170-170[UP3]	.((((((((((.(((((.(((.&.)))-))))).)))))))))).	GAAAGACCCAAUGGGGGAUUCC&UGAA-CCUCCUUUGGGUUUUUG	2	0.936110413218895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN4281_c1_g1_181_TPlot.pdf
TRINITY_DN4281_c1_g1:224	si_s93	TRINITY_DN4281_c1_g1	213	235	224	-34.80	-23.80	0.683908045977012	9	1-9,235-227;10-16,224-218;18-18,216-216	x-x,226-225[BULt];17-17,217-217[SIL];19-21,215-213[UP3]	...(.(((((((..(((((((((&)))))))))--))))))).)...	AGACGGAAGCGAGAGGAAGAAGA&UCUUCUUCU--UCGCUUCGGAUU	4	0.999999932685302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4281_c1_g1_224_TPlot.pdf
TRINITY_DN4281_c1_g1:226	si_s90	TRINITY_DN4281_c1_g1	216	235	226	-35.30	-25.20	0.713881019830028	5	2-12,234-224;14-19,223-218;21-21,216-216	1-1,235-235[UP5];13-13,x-x[BULq];20-20,217-217[SIL]	(.((((((-(((((((((((.&.))))))))))).)))))).)	CGGAAGCG-AGAGGAAGAAGA&CUUUCUUCUUCUUCGCUUCGG	3	0.999970930827431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4281_c1_g1_226_TPlot.pdf
TRINITY_DN4281_c1_g1:227	si_s92	TRINITY_DN4281_c1_g1	214	236	227	-34.90	-24.50	0.702005730659026	8	1-10,236-227;11-17,224-218;19-19,216-216	x-x,226-225[BULt];18-18,217-217[SIL];20-21,215-214[UP3]	..(.(((((((..((((((((((&))))))))))--))))))).)..	GACGGAAGCGAGAGGAAGAAGAA&UUCUUCUUCU--UCGCUUCGGAU	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4281_c1_g1_227_TPlot.pdf
TRINITY_DN4281_c1_g1:228	si_s91	TRINITY_DN4281_c1_g1	215	237	228	-34.70	-24.60	0.708933717579251	8	2-11,236-227;12-18,224-218;20-20,216-216	1-1,237-237[UP5];x-x,226-225[BULt];19-19,217-217[SIL];21-21,215-215[UP3]	.(.(((((((..((((((((((.&.))))))))))--))))))).).	ACGGAAGCGAGAGGAAGAAGAAC&UUUCUUCUUCU--UCGCUUCGGA	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4281_c1_g1_228_TPlot.pdf
TRINITY_DN4282_c0_g3:208	si_a789	TRINITY_DN4282_c0_g3	199	217	208	-24.80	-16.30	0.657258064516129	8.5	1-11,217-207;14-19,206-201	12-13,x-x[BULq];20-21,200-199[UP3]	..((((((--(((((((((((&)))))))))))..))))))..	UAUGGAAG--AGGAAGAUGGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4282_c0_g3_208_TPlot.pdf
TRINITY_DN4282_c0_g3:209	si_a788	TRINITY_DN4282_c0_g3	200	218	209	-24.80	-16.50	0.665322580645161	7.5	2-12,217-207;15-20,206-201	1-1,218-218[UP5];13-14,x-x[BULq];21-21,200-200[UP3]	.((((((--(((((((((((.&.)))))))))))..)))))).	AUGGAAG--AGGAAGAUGGAG&UUCUAUUUUUCUAUUUUCCAA	4	0.999999999999911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4282_c0_g3_209_TPlot.pdf
TRINITY_DN4282_c1_g1:140	si_a72	TRINITY_DN4282_c1_g1	129	149	140	-21.90	-15.30	0.698630136986301	6	3-17,147-133;19-20,131-130	1-2,149-148[UP5];18-18,132-132[SIL];21-21,129-129[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	UUAUUGAAAAAUAAUUUGACU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4282_c1_g1_140_TPlot.pdf
TRINITY_DN4284_c0_g1:1485	si_s437	TRINITY_DN4284_c0_g1	1475	1494	1485	-19.70	-15.40	0.781725888324873	3.5	1-16,1494-1479;18-21,1478-1475	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	UUAU-UAUGGUAUGUAAUUGU&AUAAUUACAUAUUAUAUAUAA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN4284_c0_g1_1485_TPlot.pdf
TRINITY_DN4284_c0_g1:1487	si_s435	TRINITY_DN4284_c0_g1	1476	1496	1487	-20.90	-15.30	0.732057416267943	8	3-18,1494-1479	1-2,1496-1495[UP5];19-21,1478-1476[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAUUAUGGUAUGUAAUUGUAA&CAAUAAUUACAUAUUAUAUAU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN4284_c0_g1_1487_TPlot.pdf
TRINITY_DN4284_c0_g1:1490	si_s432	TRINITY_DN4284_c0_g1	1479	1502	1490	-21.30	-15.40	0.723004694835681	11	3-5,1500-1498;6-21,1494-1479	1-2,1502-1501[UP5];x-x,1497-1495[BULt]	((((((((((((((((...(((..&..)))---))))))))))))))))	UAUGGUAUGUAAUUGUAACUGUGG&UAACA---AUAAUUACAUAUUAUA	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN4284_c0_g1_1490_TPlot.pdf
TRINITY_DN4284_c0_g1:1491	si_s431	TRINITY_DN4284_c0_g1	1480	1503	1491	-21.10	-13.90	0.658767772511848	13	4-6,1500-1498;7-21,1494-1480	1-3,1503-1501[UP5];x-x,1497-1495[BULt]	(((((((((((((((...(((...&...)))---)))))))))))))))	AUGGUAUGUAAUUGUAACUGUGGC&AUAACA---AUAAUUACAUAUUAU	2	0.989356908938648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN4284_c0_g1_1491_TPlot.pdf
TRINITY_DN4286_c0_g1:759	si_a543	TRINITY_DN4286_c0_g1	747	768	759	-28.70	-19.30	0.672473867595819	9	1-4,768-765;6-12,763-757;13-21,755-747	5-5,764-764[SIL];x-x,756-756[BULt]	(((((((((.(((((((.((((&)))).)))))))-)))))))))	GAGGGAAUGUGGUUGGGGCGAU&AUCGGUUCAAUC-UAUUUCUUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN4286_c0_g1_759_TPlot.pdf
TRINITY_DN4286_c0_g1:763	si_a539	TRINITY_DN4286_c0_g1	751	772	763	-32.70	-21.40	0.654434250764526	8.5	2-8,771-765;10-16,763-757;17-21,755-751	1-1,772-772[UP5];9-9,764-764[SIL];x-x,756-756[BULt]	(((((.(((((((.(((((((.&.))))))).)))))))-)))))	GAAUGUGGUUGGGGCGAUUGCG&AGCGAUCGGUUCAAUC-UAUUU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN4286_c0_g1_763_TPlot.pdf
TRINITY_DN42886_c0_g1:363	si_a132	TRINITY_DN42886_c0_g1	352	372	363	-26.80	-17.50	0.652985074626866	6.5	1-11,372-362;13-18,360-355	12-12,361-361[SIL];19-21,354-352[UP3]	...((((((.(((((((((((&))))))))))).))))))...	CAGGAUUAAAUAUUAUUGCUG&UAGCAAUAGUAAUUAAUCGUU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a132_TRINITY_DN42886_c0_g1_363_TPlot.pdf
TRINITY_DN42886_c0_g1:365	si_a130	TRINITY_DN42886_c0_g1	354	374	365	-26.60	-17.50	0.657894736842105	7	3-13,372-362;15-20,360-355	1-2,374-373[UP5];14-14,361-361[SIL];21-21,354-354[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	GGAUUAAAUAUUAUUGCUGCA&UAUAGCAAUAGUAAUUAAUCG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a130_TRINITY_DN42886_c0_g1_365_TPlot.pdf
TRINITY_DN42886_c0_g1:366	si_a129	TRINITY_DN42886_c0_g1	355	375	366	-25.20	-16.90	0.670634920634921	8	4-14,372-362;16-21,360-355	1-3,375-373[UP5];15-15,361-361[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAUUAAAUAUUAUUGCUGCAG&UUAUAGCAAUAGUAAUUAAUC	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN42886_c0_g1_366_TPlot.pdf
TRINITY_DN4289_c0_g1:3714	si_s739	TRINITY_DN4289_c0_g1	3703	3723	3714	-35.60	-24.30	0.682584269662921	7	1-6,3723-3718;8-10,3716-3714;12-19,3712-3705	7-7,3717-3717[SIL];11-11,3713-3713[SIL];20-21,3704-3703[UP3]	..((((((((.(((.((((((&)))))).))).))))))))..	ACGGUCAAUCAAUUAGCCCGU&ACGGGUGAAUAGAUUGACCUU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s739_TRINITY_DN4289_c0_g1_3714_TPlot.pdf
TRINITY_DN4289_c0_g1:3717	si_a761	TRINITY_DN4289_c0_g1	3705	3726	3717	-30.10	-20.40	0.677740863787375	11	1-2,3726-3725;5-10,3722-3717;12-21,3714-3705	3-4,3724-3723[SIL];11-11,3716-3715[AILt]	((((((((((..((((((..((&))..))))))-.))))))))))	GGUCAAUCAAUUAGCCCGUUGG&CCUUUGGGUU-UUUGAUUGAUU	4	0.999999147316211	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4289_c0_g1_3717_TPlot.pdf
TRINITY_DN428_c0_g1:1179	si_a323	TRINITY_DN428_c0_g1	1170	1188	1179	-26.80	-18.80	0.701492537313433	5	1-13,1188-1176;17-21,1174-1170	14-16,1175-1175[AILq]	(((((.--(((((((((((((&)))))))))))))...)))))	AAGGAU--AAAGAAUCGUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN428_c0_g1_1179_TPlot.pdf
TRINITY_DN428_c0_g1:1727	si_a759	TRINITY_DN428_c0_g1	1714	1736	1727	-32.60	-22.20	0.680981595092024	7	1-13,1736-1724;14-17,1721-1718;19-20,1716-1715	x-x,1723-1722[BULt];18-18,1717-1717[SIL];21-21,1714-1714[UP3]	.((.((((..(((((((((((((&)))))))))))))--)))).)).	CCAUUCGAAAGAAUCCAAGGGAG&CUCCUUUGGGUUU--UUGAUUGA	2	0.997224788720479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN428_c0_g1_1727_TPlot.pdf
TRINITY_DN428_c0_g1:1777	si_a67	TRINITY_DN428_c0_g1	1767	1785	1777	-27.20	-18.88	0.694117647058824	7.5	1-9,1785-1777;14-21,1774-1767	10-13,1776-1775[AILq]	((((((((..--(((((((((&)))))))))....))))))))	GAAAAAUAUG--GAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN428_c0_g1_1777_TPlot.pdf
TRINITY_DN428_c0_g1:412	si_s71	TRINITY_DN428_c0_g1	401	425	412	-25.70	-16.92	0.658365758754864	17.5	1-5,425-421;10-21,412-401	6-9,420-413[AILt]	((((((((((((........(((((&)))))----....))))))))))))	AGGGAAGAAAAGUUCGCCAGAGAAG&CUUCU----AUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN428_c0_g1_412_TPlot.pdf
TRINITY_DN4292_c0_g1:1599	si_s86	TRINITY_DN4292_c0_g1	1588	1610	1599	-32.90	-24.40	0.741641337386018	9	1-7,1610-1604;8-20,1601-1589	x-x,1603-1602[BULt];21-21,1588-1588[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	CGUGGAGGAGGAGAAGAAGGAGG&UUUCCUU--UCUUCUUCUUCGCU	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4292_c0_g1_1599_TPlot.pdf
TRINITY_DN4292_c0_g1:1601	si_s90	TRINITY_DN4292_c0_g1	1590	1610	1601	-35.30	-25.30	0.71671388101983	6	1-14,1610-1597;16-19,1595-1592	15-15,1596-1596[SIL];20-21,1591-1590[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UGGAGGAGGAGAAGAAGGAGG&CUUUCUUCUUCUUCGCUUCGG	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4292_c0_g1_1601_TPlot.pdf
TRINITY_DN4292_c0_g1:1748	si_s617	TRINITY_DN4292_c0_g1	1735	1757	1748	-28.30	-18.70	0.660777385159011	16.5	7-10,1751-1748;11-21,1745-1735	1-6,1757-1752[UP5];x-x,1747-1746[BULt]	(((((((((((..((((......&......))))--)))))))))))	GAGAGGUCGCUCAUGGAGGGCGA&UUUAAAUCCA--AGCGAUCUUUU	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN4292_c0_g1_1748_TPlot.pdf
TRINITY_DN4292_c0_g1:1793	si_a498	TRINITY_DN4292_c0_g1	1782	1803	1793	-33.50	-22.12	0.660298507462687	12.5	2-5,1802-1799;9-18,1794-1785	1-1,1803-1803[UP5];6-8,1798-1795[AILt];19-21,1784-1782[UP3]	...((((((((((....((((.&.))))-...))))))))))...	GGCGGAGGACGAAUGCUCGACG&UGUCG-UUUUUCGUCUUCCUUG	2	0.999999983946623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4292_c0_g1_1793_TPlot.pdf
TRINITY_DN4292_c0_g1:249	si_a330	TRINITY_DN4292_c0_g1	237	257	249	-30.50	-21.30	0.698360655737705	7.5	1-7,257-251;9-18,250-241;19-20,239-238	8-8,x-x[BULq];x-x,240-240[BULt];21-21,237-237[UP3]	.((.((((((((((-(((((((&))))))).))))))))))-)).	GCGCGGACGAGGAG-AAAGAGA&UUUUUUUAUUCCUUGUCC-CGA	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN4292_c0_g1_249_TPlot.pdf
TRINITY_DN4292_c0_g1:3794	si_s73	TRINITY_DN4292_c0_g1	3783	3803	3794	-24.00	-16.08	0.67	11.5	1-3,3803-3801;7-21,3797-3783	4-6,3800-3798[SIL]	(((((((((((((((...(((&)))...)))))))))))))))	AGAGGGGAGGAGAAGCGCGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4292_c0_g1_3794_TPlot.pdf
TRINITY_DN4292_c0_g1:3795	si_s72	TRINITY_DN4292_c0_g1	3784	3804	3795	-24.10	-15.98	0.663070539419087	11	1-4,3804-3801;8-21,3797-3784	5-7,3800-3798[SIL]	((((((((((((((...((((&))))...))))))))))))))	GAGGGGAGGAGAAGCGCGGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4292_c0_g1_3795_TPlot.pdf
TRINITY_DN4292_c0_g1:4034	si_a301	TRINITY_DN4292_c0_g1	4023	4043	4034	-27.80	-18.60	0.669064748201439	13	5-17,4039-4027	1-4,4043-4040[UP5];18-21,4026-4023[UP3]	....(((((((((((((....&....)))))))))))))....	GCCACCAAGCGAGUUUUCGGC&AAAAAAGAUUCGCUUGGAUUU	4	0.999942506336777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN4292_c0_g1_4034_TPlot.pdf
TRINITY_DN4292_c0_g1:4038	si_a297	TRINITY_DN4292_c0_g1	4027	4047	4038	-27.20	-18.60	0.683823529411765	16.5	9-21,4039-4027	1-8,4047-4040[UP5]	(((((((((((((........&........)))))))))))))	CCAAGCGAGUUUUCGGCCUUC&AUUUAAAAAAGAUUCGCUUGG	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN4292_c0_g1_4038_TPlot.pdf
TRINITY_DN4292_c0_g1:4310	si_a405	TRINITY_DN4292_c0_g1	4299	4319	4310	-19.80	-13.10	0.661616161616162	12.5	2-15,4318-4305	1-1,4319-4319[UP5];16-21,4304-4299[UP3]	......((((((((((((((.&.))))))))))))))......	CCAGAGAUGGACAAGGCGGUG&AAUUGUUUUGUUUAUAUUUAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4292_c0_g1_4310_TPlot.pdf
TRINITY_DN4292_c0_g1:4329	si_a255	TRINITY_DN4292_c0_g1	4317	4338	4329	-38.10	-25.60	0.671916010498688	7.5	1-14,4338-4325;15-17,4323-4321;20-21,4318-4317	x-x,4324-4324[BULt];18-19,4320-4319[SIL]	((..(((.((((((((((((((&))))))))))))))-)))..))	GUGGGUCGCUUGAUGCGAUUGG&CCGAUUGUAUCGAG-GGCAAAC	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a255_TRINITY_DN4292_c0_g1_4329_TPlot.pdf
TRINITY_DN4292_c0_g1:4331	si_a253	TRINITY_DN4292_c0_g1	4319	4340	4331	-41.20	-27.20	0.660194174757281	8	2-16,4339-4325;17-19,4323-4321	1-1,4340-4340[UP5];x-x,4324-4324[BULt];20-21,4320-4319[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	GGGUCGCUUGAUGCGAUUGGGA&CCCCGAUUGUAUCGAG-GGCAA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN4292_c0_g1_4331_TPlot.pdf
TRINITY_DN4292_c0_g1:6985	si_a152	TRINITY_DN4292_c0_g1	6974	6994	6985	-29.20	-19.48	0.667123287671233	12	2-7,6993-6988;11-19,6984-6976	1-1,6994-6994[UP5];8-10,6987-6985[SIL];20-21,6975-6974[UP3]	..(((((((((...((((((.&.))))))...)))))))))..	GCGGUUGGCCUGAUGACGACC&UGUUGUUUUAAGGUCAAUCUA	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN4292_c0_g1_6985_TPlot.pdf
TRINITY_DN4292_c0_g1:6986	si_a151	TRINITY_DN4292_c0_g1	6975	6995	6986	-28.90	-19.48	0.674048442906574	13	3-8,6993-6988;12-20,6984-6976	1-2,6995-6994[UP5];9-11,6987-6985[SIL];21-21,6975-6975[UP3]	.(((((((((...((((((..&..))))))...))))))))).	CGGUUGGCCUGAUGACGACCA&UUGUUGUUUUAAGGUCAAUCU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN4292_c0_g1_6986_TPlot.pdf
TRINITY_DN4292_c0_g1:7094	si_s93	TRINITY_DN4292_c0_g1	7084	7103	7094	-34.80	-24.90	0.71551724137931	8.5	1-11,7103-7093;13-18,7092-7087	12-12,x-x[BULq];19-21,7086-7084[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GGACCGGAG-GAGGAGGAGGA&UCUUCUUCUUCGCUUCGGAUU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4292_c0_g1_7094_TPlot.pdf
TRINITY_DN4292_c0_g1:7097	si_a501	TRINITY_DN4292_c0_g1	7086	7105	7097	-33.50	-22.20	0.662686567164179	9.5	1-8,7105-7098;10-17,7097-7090;19-19,7088-7088	9-9,x-x[BULq];18-18,7089-7089[SIL];20-21,7087-7086[UP3]	..(.((((((((-((((((((&)))))))).)))))))).)..	ACCGGAGGAGGA-GGAGGACG&CGUUUUUCGUCUUCCUUGGAA	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4292_c0_g1_7097_TPlot.pdf
TRINITY_DN4292_c0_g1:7098	si_a500	TRINITY_DN4292_c0_g1	7087	7106	7098	-34.40	-23.80	0.691860465116279	8	1-9,7106-7098;11-18,7097-7090;20-20,7088-7088	10-10,x-x[BULq];19-19,7089-7089[SIL];21-21,7087-7087[UP3]	.(.((((((((-(((((((((&))))))))).)))))))).).	CCGGAGGAGGA-GGAGGACGA&UCGUUUUUCGUCUUCCUUGGA	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN4292_c0_g1_7098_TPlot.pdf
TRINITY_DN4292_c0_g1:7279	si_s629	TRINITY_DN4292_c0_g1	7268	7288	7279	-34.60	-23.20	0.670520231213873	8.5	2-11,7287-7278;13-16,7276-7273;18-20,7271-7269	1-1,7288-7288[UP5];12-12,7277-7277[SIL];17-17,7272-7272[SIL];21-21,7268-7268[UP3]	.(((.((((.((((((((((.&.)))))))))).)))).))).	AGAAGGCCUUCGAGGAGGUCA&CGAUCUUUUCGUAGGCGUUUG	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN4292_c0_g1_7279_TPlot.pdf
TRINITY_DN4292_c0_g1:7280	si_s628	TRINITY_DN4292_c0_g1	7269	7290	7280	-35.40	-25.10	0.709039548022599	7.5	1-2,7290-7289;3-12,7287-7278;14-17,7276-7273;19-21,7271-7269	x-x,7288-7288[BULt];13-13,7277-7277[SIL];18-18,7272-7272[SIL]	(((.((((.((((((((((.((&))-)))))))))).)))).)))	GAAGGCCUUCGAGGAGGUCAGC&GC-GAUCUUUUCGUAGGCGUUU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN4292_c0_g1_7280_TPlot.pdf
TRINITY_DN4294_c0_g1:1851	si_a359	TRINITY_DN4294_c0_g1	1841	1859	1851	-29.20	-19.10	0.654109589041096	5	2-5,1858-1855;7-17,1854-1844;19-21,1843-1841	1-1,1859-1859[UP5];6-6,x-x[BULq];18-18,x-x[BULq]	(((-(((((((((((-((((.&.)))).))))))))))).)))	UUG-UCCGAUCAAAG-AGAAA&AUUCUAUUUUGAUCGGAUCAA	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN4294_c0_g1_1851_TPlot.pdf
TRINITY_DN4294_c0_g1:1853	si_a357	TRINITY_DN4294_c0_g1	1842	1861	1853	-28.80	-19.00	0.659722222222222	9.5	4-7,1858-1855;9-20,1854-1843	1-3,1861-1859[UP5];8-8,x-x[BULq];21-21,1842-1842[UP3]	.((((((((((((-((((...&...)))).)))))))))))).	UGUCCGAUCAAAG-AGAAAGA&UAAUUCUAUUUUGAUCGGAUC	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN4294_c0_g1_1853_TPlot.pdf
TRINITY_DN4294_c1_g1:1531	si_s70	TRINITY_DN4294_c1_g1	1520	1540	1531	-25.80	-17.90	0.693798449612403	4	1-13,1540-1528;15-19,1526-1522	14-14,1527-1527[SIL];20-21,1521-1520[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AAAAAGAUAAAGAAUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	2	0.999999996736461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4294_c1_g1_1531_TPlot.pdf
TRINITY_DN4294_c1_g1:1533	si_s68	TRINITY_DN4294_c1_g1	1522	1542	1533	-23.10	-18.20	0.787878787878788	5	3-15,1540-1528;17-21,1526-1522	1-2,1542-1541[UP5];16-16,1527-1527[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AAAGAUAAAGAAUAGAAGUGU&CAACUUCUAUUUUUUUUCUUU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4294_c1_g1_1533_TPlot.pdf
TRINITY_DN4294_c1_g1:1534	si_s67	TRINITY_DN4294_c1_g1	1523	1542	1534	-25.60	-17.80	0.6953125	4	1-3,1542-1540;5-16,1539-1528;18-21,1526-1523	4-4,x-x[BULq];17-17,1527-1527[SIL]	((((.((((((((((((-(((&))).)))))))))))).))))	AAGAUAAAGAAUAGAAG-UGU&GCAACUUCUAUUUUUUUUCUU	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4294_c1_g1_1534_TPlot.pdf
TRINITY_DN4294_c1_g1:1535	si_s66	TRINITY_DN4294_c1_g1	1524	1543	1535	-26.30	-17.10	0.650190114068441	5.5	2-4,1542-1540;6-17,1539-1528;19-21,1526-1524	1-1,1543-1543[UP5];5-5,x-x[BULq];18-18,1527-1527[SIL]	(((.((((((((((((-(((.&.))).)))))))))))).)))	AGAUAAAGAAUAGAAG-UGUA&AGCAACUUCUAUUUUUUUUCU	4	0.999999999979399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN4294_c1_g1_1535_TPlot.pdf
TRINITY_DN4294_c1_g1:1780	si_s817	TRINITY_DN4294_c1_g1	1769	1789	1780	-24.50	-16.30	0.66530612244898	8.5	1-14,1789-1776	15-21,1775-1769[UP3]	.......((((((((((((((&)))))))))))))).......	UUGGAAAUGUUAAGGAAAGGU&ACCUUUUCUUAAUAAUGAAAA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN4294_c1_g1_1780_TPlot.pdf
TRINITY_DN4294_c1_g1:1783	si_s814	TRINITY_DN4294_c1_g1	1772	1792	1783	-26.60	-17.50	0.657894736842105	8.5	3-17,1790-1776	1-2,1792-1791[UP5];18-21,1775-1772[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAAAUGUUAAGGAAAGGUACU&GUUACCUUUUCUUAAUAAUGA	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN4294_c1_g1_1783_TPlot.pdf
TRINITY_DN4294_c1_g1:1785	si_s812	TRINITY_DN4294_c1_g1	1774	1794	1785	-26.40	-19.50	0.738636363636364	6.5	1-3,1794-1792;5-19,1790-1776	4-4,1791-1791[SIL];20-21,1775-1774[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AAUGUUAAGGAAAGGUACUGA&UCGUUACCUUUUCUUAAUAAU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN4294_c1_g1_1785_TPlot.pdf
TRINITY_DN4294_c1_g1:1788	si_s809	TRINITY_DN4294_c1_g1	1777	1797	1788	-28.50	-23.40	0.821052631578947	4	1-6,1797-1792;8-21,1790-1777	7-7,1791-1791[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	GUUAAGGAAAGGUACUGAAGA&UCUUCGUUACCUUUUCUUAAU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4294_c1_g1_1788_TPlot.pdf
TRINITY_DN4294_c1_g1:1790	si_s807	TRINITY_DN4294_c1_g1	1779	1799	1790	-28.90	-21.30	0.737024221453287	6.5	3-8,1797-1792;10-21,1790-1779	1-2,1799-1798[UP5];9-9,1791-1791[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	UAAGGAAAGGUACUGAAGACG&UAUCUUCGUUACCUUUUCUUA	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4294_c1_g1_1790_TPlot.pdf
TRINITY_DN4294_c1_g1:1792	si_s805	TRINITY_DN4294_c1_g1	1781	1801	1792	-28.60	-19.10	0.667832167832168	10.5	5-10,1797-1792;12-21,1790-1781	1-4,1801-1798[UP5];11-11,1791-1791[SIL]	((((((((((.((((((....&....)))))).))))))))))	AGGAAAGGUACUGAAGACGCG&UUUAUCUUCGUUACCUUUUCU	4	0.999999999769446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4294_c1_g1_1792_TPlot.pdf
TRINITY_DN4294_c1_g1:2473	si_a785	TRINITY_DN4294_c1_g1	2461	2483	2473	-25.90	-17.10	0.66023166023166	9	1-5,2483-2479;6-12,2477-2471;13-20,2469-2462	x-x,2478-2478[BULt];x-x,2470-2470[BULt];21-21,2461-2461[UP3]	.((((((((.(((((((.(((((&)))))-)))))))-)))))))).	AGAAAUGGACAGAGUAGUAGGAG&CUCUU-CUAUUUU-UCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4294_c1_g1_2473_TPlot.pdf
TRINITY_DN4294_c1_g1:2597	si_a856	TRINITY_DN4294_c1_g1	2584	2606	2597	-24.70	-16.98	0.687449392712551	9.5	2-12,2605-2595;15-19,2590-2586	1-1,2606-2606[UP5];13-14,2594-2591[AILt];20-21,2585-2584[UP3]	..(((((....(((((((((((.&.)))))))))))--..)))))..	CGUAGUAUUUGUGGAUUUCAAGC&ACUUGAAAUCCA--AUUAUUAAA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN4294_c1_g1_2597_TPlot.pdf
TRINITY_DN4294_c1_g1:360	si_s76	TRINITY_DN4294_c1_g1	349	369	360	-23.60	-16.40	0.694915254237288	5	2-14,368-356;16-21,354-349	1-1,369-369[UP5];15-15,355-355[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAGGAGAAAGAAAAAGGAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4294_c1_g1_360_TPlot.pdf
TRINITY_DN4294_c1_g1:3648	si_s84	TRINITY_DN4294_c1_g1	3637	3658	3648	-32.30	-23.00	0.712074303405573	7.5	1-6,3658-3653;7-8,3651-3650;10-20,3648-3638	x-x,3652-3652[BULt];9-9,3649-3649[SIL];21-21,3637-3637[UP3]	.(((((((((((.((.((((((&))))))-)).))))))))))).	GGAAGAAGGAGGUAGAGGAAGA&UCUUUC-CUUUCUUCUUCUUCG	4	0.999999997365935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4294_c1_g1_3648_TPlot.pdf
TRINITY_DN4294_c1_g1:3649	si_s80	TRINITY_DN4294_c1_g1	3638	3658	3649	-28.20	-21.70	0.769503546099291	6.5	1-9,3658-3650;11-21,3648-3638	10-10,3649-3649[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GAAGAAGGAGGUAGAGGAAGA&UUUUUCUUUCCUUUCUUCUUC	3	0.999999522802842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4294_c1_g1_3649_TPlot.pdf
TRINITY_DN4295_c0_g1:197	si_a410	TRINITY_DN4295_c0_g1	185	206	197	-17.80	-12.00	0.674157303370786	9.5	1-10,206-197;11-18,195-188	x-x,196-196[BULt];19-21,187-185[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	AGGAUUUAGGUGAUAGACAGGA&UUUUGUUUAU-AUUUAAAUAAA	2	0.999999930274592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4295_c0_g1_197_TPlot.pdf
TRINITY_DN4295_c0_g1:212	si_s312	TRINITY_DN4295_c0_g1	199	221	212	-29.00	-20.00	0.689655172413793	13	4-11,218-211;12-20,208-200	1-3,221-219[UP5];x-x,210-209[BULt];21-21,199-199[UP3]	.(((((((((..((((((((...&...))))))))--))))))))).	AGACAGGAAGCUGGCAGGAUGGC&AAAAUUCUGUC--CUUCUUGUUA	3	0.999996313032064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4295_c0_g1_212_TPlot.pdf
TRINITY_DN4295_c0_g1:453	si_a406	TRINITY_DN4295_c0_g1	442	462	453	-19.80	-13.30	0.671717171717172	8.5	1-10,462-453;12-18,451-445	11-11,452-452[SIL];19-21,444-442[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AUGAAAUGUAUGCAAGAUAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999999476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4295_c0_g1_453_TPlot.pdf
TRINITY_DN4295_c0_g1:454	si_a405	TRINITY_DN4295_c0_g1	443	463	454	-19.80	-14.20	0.717171717171717	7.5	1-11,463-453;13-19,451-445	12-12,452-452[SIL];20-21,444-443[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UGAAAUGUAUGCAAGAUAAUU&AAUUGUUUUGUUUAUAUUUAA	3	0.999999998855167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4295_c0_g1_454_TPlot.pdf
TRINITY_DN4295_c0_g1:455	si_a404	TRINITY_DN4295_c0_g1	444	464	455	-21.70	-15.80	0.728110599078341	6	1-12,464-453;14-20,451-445	13-13,452-452[SIL];21-21,444-444[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	GAAAUGUAUGCAAGAUAAUUU&GAAUUGUUUUGUUUAUAUUUA	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4295_c0_g1_455_TPlot.pdf
TRINITY_DN4295_c0_g1:456	si_a403	TRINITY_DN4295_c0_g1	445	465	456	-22.00	-15.60	0.709090909090909	6	2-13,464-453;15-21,451-445	1-1,465-465[UP5];14-14,452-452[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAAUGUAUGCAAGAUAAUUUA&AGAAUUGUUUUGUUUAUAUUU	3	0.999985095982078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN4295_c0_g1_456_TPlot.pdf
TRINITY_DN4295_c0_g1:457	si_a402	TRINITY_DN4295_c0_g1	446	466	457	-22.40	-14.70	0.65625	8	3-14,464-453;16-21,451-446	1-2,466-465[UP5];15-15,452-452[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AAUGUAUGCAAGAUAAUUUAC&UAGAAUUGUUUUGUUUAUAUU	3	0.99999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN4295_c0_g1_457_TPlot.pdf
TRINITY_DN42961_c0_g1:49	si_a550	TRINITY_DN42961_c0_g1	34	58	49	-30.90	-20.50	0.663430420711974	8	3-13,56-46;14-19,42-37;20-21,35-34	1-2,58-57[UP5];x-x,45-43[BULt];x-x,36-36[BULt]	((.((((((...(((((((((((..&..)))))))))))---))))))-))	GGCGAGAUAAGAAAGAAGUAGAUAU&CAAUCUAUUUCUU---UAUCUC-CC	2	0.978631982609921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN42961_c0_g1_49_TPlot.pdf
TRINITY_DN42961_c0_g1:51	si_a548	TRINITY_DN42961_c0_g1	37	61	51	-27.20	-19.60	0.720588235294118	6.5	1-4,61-58;5-15,56-46;16-21,42-37	x-x,57-57[BULt];x-x,45-43[BULt]	((((((...(((((((((((.((((&))))-)))))))))))---))))))	GAGAUAAGAAAGAAGUAGAUAUGAG&UUCA-AUCUAUUUCUU---UAUCUC	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN42961_c0_g1_51_TPlot.pdf
TRINITY_DN42961_c0_g1:55	si_a544	TRINITY_DN42961_c0_g1	44	65	55	-28.90	-18.90	0.653979238754325	9.5	4-8,62-58;9-20,56-45	1-3,65-63[UP5];x-x,57-57[BULt];21-21,44-44[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	GAAAGAAGUAGAUAUGAGCGAU&UCGGUUCA-AUCUAUUUCUUUA	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN42961_c0_g1_55_TPlot.pdf
TRINITY_DN42961_c0_g1:65	si_a69	TRINITY_DN42961_c0_g1	54	74	65	-24.00	-17.40	0.725	8	1-16,74-59	17-21,58-54[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUAUGAGCGAUUUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN42961_c0_g1_65_TPlot.pdf
TRINITY_DN42961_c0_g1:71	si_a63	TRINITY_DN42961_c0_g1	60	80	71	-30.20	-29.50	0.97682119205298	3	2-21,79-60	1-1,80-80[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AGCGAUUUGGAAGAAGCGAGA&ACUCGCUUCUUUCAAAUUGUU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN42961_c0_g1_71_TPlot.pdf
TRINITY_DN42961_c0_g1:75	si_a59	TRINITY_DN42961_c0_g1	64	83	75	-34.00	-25.50	0.75	5	1-3,83-81;6-21,79-64	4-5,80-80[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	AUUUGGAAGAAGCGAGA-GAU&GUCGACUCGCUUCUUUCAAAU	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN42961_c0_g1_75_TPlot.pdf
TRINITY_DN42963_c0_g1:173	si_a22	TRINITY_DN42963_c0_g1	162	182	173	-23.50	-16.30	0.693617021276596	8	1-6,182-177;8-18,175-165	7-7,176-176[SIL];19-21,164-162[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	ACAAGAACUAGAAGAGAAUAG&CUAUUUAUUUUUAGUUCUAAG	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN42963_c0_g1_173_TPlot.pdf
TRINITY_DN4296_c0_g1:191	si_s896	TRINITY_DN4296_c0_g1	180	200	191	-31.60	-23.70	0.75	6	1-15,200-186;18-21,183-180	16-17,185-184[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UGGAUCUGAAGGGAAGGCUUG&UAGGCUUUCUCUUCAAUUUCA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4296_c0_g1_191_TPlot.pdf
TRINITY_DN4296_c0_g1:193	si_s894	TRINITY_DN4296_c0_g1	182	202	193	-29.10	-20.70	0.711340206185567	11	3-17,200-186	1-2,202-201[UP5];18-21,185-182[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAUCUGAAGGGAAGGCUUGCA&AAUAGGCUUUCUCUUCAAUUU	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4296_c0_g1_193_TPlot.pdf
TRINITY_DN4296_c0_g1:194	si_s893	TRINITY_DN4296_c0_g1	183	203	194	-29.10	-20.70	0.711340206185567	11.5	4-18,200-186	1-3,203-201[UP5];19-21,185-183[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUCUGAAGGGAAGGCUUGCAA&AAAUAGGCUUUCUCUUCAAUU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4296_c0_g1_194_TPlot.pdf
TRINITY_DN4296_c0_g1:196	si_s891	TRINITY_DN4296_c0_g1	185	205	196	-29.60	-20.70	0.699324324324324	13.5	6-20,200-186	1-5,205-201[UP5];21-21,185-185[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUGAAGGGAAGGCUUGCAAAG&AUAAAUAGGCUUUCUCUUCAA	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4296_c0_g1_196_TPlot.pdf
TRINITY_DN4296_c0_g1:197	si_s890	TRINITY_DN4296_c0_g1	186	206	197	-29.50	-20.40	0.691525423728814	14.5	7-21,200-186	1-6,206-201[UP5]	(((((((((((((((......&......)))))))))))))))	UGAAGGGAAGGCUUGCAAAGG&AAUAAAUAGGCUUUCUCUUCA	2	0.97359694244819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4296_c0_g1_197_TPlot.pdf
TRINITY_DN4296_c0_g1:198	si_s889	TRINITY_DN4296_c0_g1	187	207	198	-28.80	-18.90	0.65625	16	8-21,200-187	1-7,207-201[UP5]	((((((((((((((.......&.......))))))))))))))	GAAGGGAAGGCUUGCAAAGGA&AAAUAAAUAGGCUUUCUCUUC	4	0.999991030208567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN4296_c0_g1_198_TPlot.pdf
TRINITY_DN42980_c0_g1:194	si_a761	TRINITY_DN42980_c0_g1	182	203	194	-30.10	-20.40	0.677740863787375	8	1-2,203-202;4-15,200-189;16-21,187-182	3-3,201-201[SIL];x-x,188-188[BULt]	((((((.((((((((((((.((&)).))))))))))))-))))))	AGUCGACUCAAGGACUCGAUGG&CCUUUGGGUUUUUGA-UUGAUU	2	0.999806552470596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN42980_c0_g1_194_TPlot.pdf
TRINITY_DN42980_c0_g1:195	si_a760	TRINITY_DN42980_c0_g1	183	204	195	-31.10	-21.00	0.67524115755627	8	1-3,204-202;5-16,200-189;17-21,187-183	4-4,201-201[SIL];x-x,188-188[BULt]	(((((.((((((((((((.(((&))).))))))))))))-)))))	GUCGACUCAAGGACUCGAUGGA&UCCUUUGGGUUUUUGA-UUGAU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN42980_c0_g1_195_TPlot.pdf
TRINITY_DN4298_c0_g1:1486	si_s423	TRINITY_DN4298_c0_g1	1471	1495	1486	-21.50	-14.00	0.651162790697674	11.5	1-12,1495-1484;13-19,1479-1473	x-x,1483-1480[BULt];20-21,1472-1471[UP3]	..(((((((....((((((((((((&))))))))))))----)))))))..	UUAUUGUUGAAAUUUAUAUGGAAUA&UAUUCUAUAUAA----CAAUAAUUA	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN4298_c0_g1_1486_TPlot.pdf
TRINITY_DN4298_c0_g1:1487	si_s422	TRINITY_DN4298_c0_g1	1472	1496	1487	-21.30	-14.00	0.657276995305164	7.5	2-13,1495-1484;14-20,1479-1473	1-1,1496-1496[UP5];x-x,1483-1480[BULt];21-21,1472-1472[UP3]	.(((((((....((((((((((((.&.))))))))))))----))))))).	UAUUGUUGAAAUUUAUAUGGAAUAG&AUAUUCUAUAUAA----CAAUAAUU	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN4298_c0_g1_1487_TPlot.pdf
TRINITY_DN4298_c0_g1:1495	si_s414	TRINITY_DN4298_c0_g1	1484	1504	1495	-24.90	-17.00	0.682730923694779	8.5	4-8,1501-1497;10-21,1495-1484	1-3,1504-1502[UP5];9-9,1496-1496[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UUAUAUGGAAUAGGUUGUACA&AAAACGACAUAUUCUAUAUAA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN4298_c0_g1_1495_TPlot.pdf
TRINITY_DN4299_c0_g1:1724	si_s77	TRINITY_DN4299_c0_g1	1712	1733	1724	-25.50	-17.70	0.694117647058824	9	1-4,1733-1730;6-15,1728-1719;16-21,1717-1712	5-5,1729-1729[SIL];x-x,1718-1718[BULt]	((((((.((((((((((.((((&)))).))))))))))-))))))	GAAGAAGGGGGAAGAGGCGGAG&UUUUUUUUCUUUCCU-UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4299_c0_g1_1724_TPlot.pdf
TRINITY_DN4299_c0_g1:4178	si_s68	TRINITY_DN4299_c0_g1	4167	4187	4178	-23.10	-15.40	0.666666666666667	8	1-1,4187-4187;4-13,4184-4175;15-20,4173-4168	2-3,4186-4185[SIL];14-14,4174-4174[SIL];21-21,4167-4167[UP3]	.((((((.((((((((((..(&)..)))))))))).)))))).	CAGGAAGCAAAGUAGAAGCGG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4299_c0_g1_4178_TPlot.pdf
TRINITY_DN429_c0_g1:5929	si_a736	TRINITY_DN429_c0_g1	5917	5938	5929	-40.20	-27.80	0.691542288557214	8.5	2-15,5937-5924;16-17,5922-5921	1-1,5938-5938[UP5];x-x,5923-5923[BULt];18-21,5920-5917[UP3]	....((.((((((((((((((.&.))))))))))))))-))....	AAUGGGACCGGGGGUGGAGAUA&CAUCUUUACCCCUGG-CCAUGA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN429_c0_g1_5929_TPlot.pdf
TRINITY_DN429_c0_g1:5935	si_a730	TRINITY_DN429_c0_g1	5924	5952	5935	-43.20	-30.60	0.708333333333333	21	1-2,5952-5951;4-7,5949-5946;8-21,5937-5924	3-3,5950-5950[SIL];x-x,5945-5938[BULt]	((((((((((((((........((((.((&)).))))--------))))))))))))))	CCGGGGGUGGAGAUAAAUUCCGGCCCUGG&CUCGGGC--------AUCUUUACCCCUGG	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a730_TRINITY_DN429_c0_g1_5935_TPlot.pdf
TRINITY_DN429_c0_g1:6290	si_a757	TRINITY_DN429_c0_g1	6279	6298	6290	-33.10	-23.00	0.694864048338369	10.5	1-7,6298-6292;10-18,6290-6282	8-9,6291-6291[AILq];19-21,6281-6279[UP3]	...(((((((((.-(((((((&)))))))..)))))))))...	GGACGGGGGCCCU-GGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN429_c0_g1_6290_TPlot.pdf
TRINITY_DN429_c0_g1:6291	si_a756	TRINITY_DN429_c0_g1	6280	6299	6291	-33.10	-23.30	0.70392749244713	10.5	2-8,6298-6292;11-19,6290-6282	1-1,6299-6299[UP5];9-10,6291-6291[AILq];20-21,6281-6280[UP3]	..(((((((((.-(((((((.&.)))))))..)))))))))..	GACGGGGGCCCU-GGGAGGUG&AACCUCCUUUGGGUUUUUGAU	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN429_c0_g1_6291_TPlot.pdf
TRINITY_DN429_c0_g1:6366	si_a361	TRINITY_DN429_c0_g1	6354	6375	6366	-29.00	-19.50	0.672413793103448	11	1-7,6375-6369;9-11,6367-6365;12-18,6363-6357	8-8,6368-6368[SIL];x-x,6364-6364[BULt];19-21,6356-6354[UP3]	...(((((((.(((.(((((((&))))))).)))-)))))))...	CCCUGAUCCGUGUCCGAGUGGA&UCUAUUUUGAU-CGGAUCAAAA	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN429_c0_g1_6366_TPlot.pdf
TRINITY_DN429_c0_g1:6368	si_a359	TRINITY_DN429_c0_g1	6356	6377	6368	-29.20	-19.90	0.681506849315068	9.5	2-9,6376-6369;11-13,6367-6365;14-20,6363-6357	1-1,6377-6377[UP5];10-10,6368-6368[SIL];x-x,6364-6364[BULt];21-21,6356-6356[UP3]	.(((((((.(((.((((((((.&.)))))))).)))-))))))).	CUGAUCCGUGUCCGAGUGGAGC&AUUCUAUUUUGAU-CGGAUCAA	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN429_c0_g1_6368_TPlot.pdf
TRINITY_DN429_c0_g1:6369	si_a358	TRINITY_DN429_c0_g1	6357	6378	6369	-29.10	-19.60	0.673539518900344	10.5	3-10,6376-6369;12-14,6367-6365;15-21,6363-6357	1-2,6378-6377[UP5];11-11,6368-6368[SIL];x-x,6364-6364[BULt]	(((((((.(((.((((((((..&..)))))))).)))-)))))))	UGAUCCGUGUCCGAGUGGAGCC&AAUUCUAUUUUGAU-CGGAUCA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN429_c0_g1_6369_TPlot.pdf
TRINITY_DN429_c0_g1:6425	si_s708	TRINITY_DN429_c0_g1	6414	6438	6425	-31.90	-21.60	0.677115987460815	13	1-8,6438-6431;9-18,6426-6417	x-x,6430-6427[BULt];19-21,6416-6414[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	GACUUCCCUGUUCCGCAACUGGUAA&UUAUUAGU----GAACAGGGAAAGA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s708_TRINITY_DN429_c0_g1_6425_TPlot.pdf
TRINITY_DN429_c0_g1:6431	si_s706	TRINITY_DN429_c0_g1	6416	6440	6431	-29.40	-22.00	0.748299319727891	13	2-10,6439-6431;11-20,6426-6417	1-1,6440-6440[UP5];x-x,6430-6427[BULt];21-21,6416-6416[UP3]	.((((((((((....(((((((((.&.)))))))))----)))))))))).	CUUCCCUGUUCCGCAACUGGUAAGC&AUUUAUUAGU----GAACAGGGAAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN429_c0_g1_6431_TPlot.pdf
TRINITY_DN429_c0_g1:6432	si_s705	TRINITY_DN429_c0_g1	6417	6441	6432	-31.40	-21.70	0.691082802547771	14	3-11,6439-6431;12-21,6426-6417	1-2,6441-6440[UP5];x-x,6430-6427[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	UUCCCUGUUCCGCAACUGGUAAGCA&GAUUUAUUAGU----GAACAGGGAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN429_c0_g1_6432_TPlot.pdf
TRINITY_DN429_c0_g1:6453	si_a316	TRINITY_DN429_c0_g1	6441	6462	6453	-26.30	-17.50	0.665399239543726	12.5	1-10,6462-6453;12-15,6450-6447	11-11,6452-6451[AILt];16-21,6446-6441[UP3]	......((((..((((((((((&))))))))))-.))))......	AGUUACGUCAGAGGGUAAGUCC&GGAUUUAUCC-AUGAUUUUUUU	3	0.999999901613011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN429_c0_g1_6453_TPlot.pdf
TRINITY_DN429_c0_g1:6454	si_a315	TRINITY_DN429_c0_g1	6442	6463	6454	-27.00	-18.30	0.677777777777778	11.5	1-11,6463-6453;13-16,6450-6447	12-12,6452-6451[AILt];17-21,6446-6442[UP3]	.....((((..(((((((((((&)))))))))))-.)))).....	GUUACGUCAGAGGGUAAGUCCA&UGGAUUUAUCC-AUGAUUUUUU	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN429_c0_g1_6454_TPlot.pdf
TRINITY_DN429_c0_g1:6455	si_a314	TRINITY_DN429_c0_g1	6443	6464	6455	-27.10	-18.50	0.682656826568266	10.5	2-12,6463-6453;14-17,6450-6447	1-1,6464-6464[UP5];13-13,6452-6451[AILt];18-21,6446-6443[UP3]	....((((..(((((((((((.&.)))))))))))-.))))....	UUACGUCAGAGGGUAAGUCCAU&UUGGAUUUAUCC-AUGAUUUUU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN429_c0_g1_6455_TPlot.pdf
TRINITY_DN42_c0_g1:4662	si_s228	TRINITY_DN42_c0_g1	4650	4671	4662	-34.10	-23.02	0.675073313782991	8	1-10,4671-4662;14-21,4657-4650	11-13,4661-4658[AILt]	((((((((....((((((((((&))))))))))-...))))))))	AUUGAUUCAACAAUUUACGCGG&CCGCGUGAAU-AAGGAAUCAAU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s228_TRINITY_DN42_c0_g1_4662_TPlot.pdf
TRINITY_DN42_c0_g1:4774	si_a394	TRINITY_DN42_c0_g1	4763	4783	4774	-24.30	-16.70	0.687242798353909	4	1-12,4783-4772;14-21,4770-4763	13-13,4771-4771[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	CAAAAUGAAUCUGUAUUUUUA&UAAGAAUAUAGAAUUGUUUUG	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN42_c0_g1_4774_TPlot.pdf
TRINITY_DN42_c0_g1:8784	si_a452	TRINITY_DN42_c0_g1	8773	8793	8784	-23.00	-15.20	0.660869565217391	9	1-13,8793-8781	14-21,8780-8773[UP3]	........(((((((((((((&)))))))))))))........	UAAACCCAAACAACGAUUAUC&GAUAAUUGUUGUUAUAUAUAA	4	0.999992852258198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN42_c0_g1_8784_TPlot.pdf
TRINITY_DN42_c0_g1:8839	si_a64	TRINITY_DN42_c0_g1	8828	8848	8839	-29.40	-19.42	0.660544217687075	10	1-10,8848-8839;17-21,8832-8828	11-16,8838-8833[SIL]	(((((......((((((((((&))))))))))......)))))	GGACAUAUAAUGAGAAGCGAG&CUCGCUUCUUUCAAAUUGUUU	3	0.999998256697046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN42_c0_g1_8839_TPlot.pdf
TRINITY_DN42_c0_g1:9099	si_s612	TRINITY_DN42_c0_g1	9089	9108	9099	-28.20	-20.30	0.719858156028369	6	1-16,9108-9093;18-19,9092-9091	17-17,x-x[BULq];20-21,9090-9089[UP3]	..((-((((((((((((((((&)))))))))))))))).))..	GACG-UUGGAUUUGAGAGAGA&UCUUUUUUAAAUCCAAGCGAU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN42_c0_g1_9099_TPlot.pdf
TRINITY_DN42_c0_g1:9100	si_s611	TRINITY_DN42_c0_g1	9090	9109	9100	-28.20	-20.30	0.719858156028369	6	2-17,9108-9093;19-20,9092-9091	1-1,9109-9109[UP5];18-18,x-x[BULq];21-21,9090-9090[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	ACG-UUGGAUUUGAGAGAGAG&AUCUUUUUUAAAUCCAAGCGA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN42_c0_g1_9100_TPlot.pdf
TRINITY_DN42_c0_g1:9101	si_s610	TRINITY_DN42_c0_g1	9091	9110	9101	-27.20	-20.30	0.746323529411765	7	3-18,9108-9093;20-21,9092-9091	1-2,9110-9109[UP5];19-19,x-x[BULq]	((-((((((((((((((((..&..)))))))))))))))).))	CG-UUGGAUUUGAGAGAGAGA&AAUCUUUUUUAAAUCCAAGCG	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN42_c0_g1_9101_TPlot.pdf
TRINITY_DN42_c0_g1:9102	si_s609	TRINITY_DN42_c0_g1	9091	9111	9102	-27.70	-18.70	0.675090252707581	10	4-19,9108-9093	1-3,9111-9109[UP5];20-21,9092-9091[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGUUGGAUUUGAGAGAGAGAU&GAAUCUUUUUUAAAUCCAAGC	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN42_c0_g1_9102_TPlot.pdf
TRINITY_DN42_c0_g1:9103	si_s608	TRINITY_DN42_c0_g1	9092	9112	9103	-26.70	-18.70	0.700374531835206	11	5-20,9108-9093	1-4,9112-9109[UP5];21-21,9092-9092[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUUGGAUUUGAGAGAGAGAUU&CGAAUCUUUUUUAAAUCCAAG	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN42_c0_g1_9103_TPlot.pdf
TRINITY_DN42_c0_g1:9105	si_s606	TRINITY_DN42_c0_g1	9094	9117	9105	-28.20	-20.12	0.713475177304965	13.5	1-4,9117-9114;7-21,9108-9094	5-6,9113-9109[AILt]	(((((((((((((((.....((((&))))---..)))))))))))))))	UGGAUUUGAGAGAGAGAUUAUGCU&AGCG---AAUCUUUUUUAAAUCCA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN42_c0_g1_9105_TPlot.pdf
TRINITY_DN42_c0_g1:9106	si_s605	TRINITY_DN42_c0_g1	9095	9118	9106	-27.50	-18.82	0.684363636363636	14	2-5,9117-9114;8-21,9108-9095	1-1,9118-9118[UP5];6-7,9113-9109[AILt]	((((((((((((((.....((((.&.))))---..))))))))))))))	GGAUUUGAGAGAGAGAUUAUGCUA&AAGCG---AAUCUUUUUUAAAUCC	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN42_c0_g1_9106_TPlot.pdf
TRINITY_DN42_c0_g2:2198	si_a755	TRINITY_DN42_c0_g2	2186	2207	2198	-34.90	-23.50	0.673352435530086	9.5	3-12,2205-2196;13-18,2194-2189	1-2,2207-2206[UP5];x-x,2195-2195[BULt];19-21,2188-2186[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	AGUAAAGCCACAGAGGAGGUAU&GAACCUCCUUUG-GGUUUUUGA	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN42_c0_g2_2198_TPlot.pdf
TRINITY_DN42_c0_g2:252	si_s83	TRINITY_DN42_c0_g2	238	261	252	-30.90	-20.40	0.660194174757282	7	2-11,260-251;12-13,249-248;14-18,246-242;19-21,240-238	1-1,261-261[UP5];x-x,250-250[BULt];x-x,247-247[BULt];x-x,241-241[BULt]	(((.(((((.((.((((((((((.&.))))))))))-))-)))))-)))	GAAUGAAGAUAGUAGAGGAGAGAC&UUCUUUCCUUU-CU-UCUUC-UUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN42_c0_g2_252_TPlot.pdf
TRINITY_DN42_c0_g2:255	si_s80	TRINITY_DN42_c0_g2	242	264	255	-28.20	-18.60	0.659574468085106	10.5	5-14,260-251;15-16,249-248;17-21,246-242	1-4,264-261[UP5];x-x,250-250[BULt];x-x,247-247[BULt]	(((((.((.((((((((((....&....))))))))))-))-)))))	GAAGAUAGUAGAGGAGAGACAAU&UUUUUCUUUCCUUU-CU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN42_c0_g2_255_TPlot.pdf
TRINITY_DN42_c0_g2:258	si_a75	TRINITY_DN42_c0_g2	246	267	258	-21.30	-17.30	0.812206572769953	6	1-13,267-255;15-20,252-247	14-14,254-253[AILt];21-21,246-246[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	AUAGUAGAGGAGAGACAAUUUG&CAAAUUGUUUUUC-AUUAUUAA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN42_c0_g2_258_TPlot.pdf
TRINITY_DN42_c0_g2:260	si_a73	TRINITY_DN42_c0_g2	248	269	260	-21.90	-16.30	0.744292237442922	6.5	2-15,268-255;17-21,252-248	1-1,269-269[UP5];16-16,254-253[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	AGUAGAGGAGAGACAAUUUGGG&UUCAAAUUGUUUUUC-AUUAUU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN42_c0_g2_260_TPlot.pdf
TRINITY_DN42_c0_g2:261	si_a72	TRINITY_DN42_c0_g2	249	270	261	-21.90	-17.10	0.780821917808219	6.5	1-16,270-255;18-21,252-249	17-17,254-253[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	GUAGAGGAGAGACAAUUUGGGA&UUUCAAAUUGUUUUUC-AUUAU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN42_c0_g2_261_TPlot.pdf
TRINITY_DN42_c0_g2:264	si_a69	TRINITY_DN42_c0_g2	253	273	264	-24.00	-17.30	0.720833333333333	10	4-19,270-255	1-3,273-271[UP5];20-21,254-253[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGGAGAGACAAUUUGGGAUCA&UUCUUUCAAAUUGUUUUUCAU	3	0.999875134613737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN42_c0_g2_264_TPlot.pdf
TRINITY_DN42_c0_g2:684	si_s485	TRINITY_DN42_c0_g2	675	693	684	-18.10	-11.80	0.651933701657459	8	1-12,693-682;15-21,681-675	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	UUUGUGU--AGGUGGAUAUGG&CUAUAUUUAUUUAAAUAUAAA	4	0.999999568533045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN42_c0_g2_684_TPlot.pdf
TRINITY_DN42_c2_g1:3002	si_a641	TRINITY_DN42_c2_g1	2991	3011	3002	-23.60	-16.00	0.677966101694915	10.5	2-17,3010-2995	1-1,3011-3011[UP5];18-21,2994-2991[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCAAAUGUUGCUCAGGAGGAA&AUUUUUUUGAGUAAUAUAUCG	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN42_c2_g1_3002_TPlot.pdf
TRINITY_DN43001_c0_g1:164	si_a775	TRINITY_DN43001_c0_g1	153	173	164	-27.20	-18.80	0.691176470588235	11.5	5-18,169-156	1-4,173-170[UP5];19-21,155-153[UP3]	...((((((((((((((....&....))))))))))))))...	UGUUAGGAGAGUUGGAUGCCC&AUUGAUUCAACUCUUCUAUUU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN43001_c0_g1_164_TPlot.pdf
TRINITY_DN4300_c0_g1:2484	si_a779	TRINITY_DN4300_c0_g1	2473	2494	2484	-27.00	-19.00	0.703703703703704	7.5	1-9,2494-2486;10-14,2484-2480;16-21,2478-2473	x-x,2485-2485[BULt];15-15,2479-2479[SIL]	((((((.(((((.(((((((((&)))))))))-))))).))))))	AGAGAGUUGGAGCGGGUUGGAU&AUUCAACUC-UUCUAUUUUUCU	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN4300_c0_g1_2484_TPlot.pdf
TRINITY_DN4300_c0_g1:2515	si_s92	TRINITY_DN4300_c0_g1	2502	2524	2515	-34.90	-24.20	0.693409742120344	10	2-15,2523-2510;16-19,2507-2504	1-1,2524-2524[UP5];x-x,2509-2508[BULt];20-21,2503-2502[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	UGCUGAAGGGCGGAGGGGAGGAG&UUCUUCUUCUUCGCU--UCGGAU	4	0.999999568533045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4300_c0_g1_2515_TPlot.pdf
TRINITY_DN4300_c0_g1:3399	si_a60	TRINITY_DN4300_c0_g1	3387	3410	3399	-32.20	-21.10	0.65527950310559	10.5	1-9,3410-3402;11-12,3398-3397;13-21,3395-3387	10-10,3401-3399[AILt];x-x,3396-3396[BULt]	(((((((((.((...(((((((((&)))))))))--.))-)))))))))	AGUUUGAGACGACGCGCGGGUCGG&UCGACUCGC--UUC-UUUCAAAUU	4	0.999949203849064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN4300_c0_g1_3399_TPlot.pdf
TRINITY_DN4301_c0_g1:1172	si_a229	TRINITY_DN4301_c0_g1	1156	1182	1172	-27.60	-18.20	0.659420289855072	12.5	1-9,1182-1174;11-16,1171-1166;17-21,1160-1156	10-10,1173-1172[AILt];x-x,1165-1161[BULt]	(((((.....((((((..(((((((((&)))))))))-.))))))-----)))))	CGAGUGUGUUUGAUUACGGGAAGCGUG&CAUGUUUCU-AUAAUCA-----AUUCG	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN4301_c0_g1_1172_TPlot.pdf
TRINITY_DN4301_c1_g1:1090	si_s78	TRINITY_DN4301_c1_g1	1078	1099	1090	-26.20	-17.50	0.66793893129771	7.5	1-11,1099-1089;12-17,1087-1082	x-x,1088-1088[BULt];18-21,1081-1078[UP3]	....((((((.(((((((((((&)))))))))))-))))))....	CAUUGAGAGGUAGAGAAAAAAA&UUUUUUUCUUU-CCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4301_c1_g1_1090_TPlot.pdf
TRINITY_DN4301_c1_g1:1091	si_s77	TRINITY_DN4301_c1_g1	1079	1100	1091	-25.50	-18.40	0.72156862745098	6.5	1-12,1100-1089;13-18,1087-1082	x-x,1088-1088[BULt];19-21,1081-1079[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AUUGAGAGGUAGAGAAAAAAAA&UUUUUUUUCUUU-CCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4301_c1_g1_1091_TPlot.pdf
TRINITY_DN4301_c1_g1:1094	si_s74	TRINITY_DN4301_c1_g1	1082	1103	1094	-25.00	-18.00	0.72	7	4-15,1100-1089;16-21,1087-1082	1-3,1103-1101[UP5];x-x,1088-1088[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAGAGGUAGAGAAAAAAAAAGA&CUAUUUUUUUUCUUU-CCUUUC	3	0.999999999905081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4301_c1_g1_1094_TPlot.pdf
TRINITY_DN4301_c1_g1:1096	si_s72	TRINITY_DN4301_c1_g1	1084	1104	1096	-24.10	-16.70	0.692946058091286	4	1-4,1104-1101;6-17,1100-1089;18-21,1087-1084	5-5,x-x[BULq];x-x,1088-1088[BULt]	((((.((((((((((((-((((&)))).))))))))))))-))))	GAGGUAGAGAAAAAAAA-AGAA&UUCUAUUUUUUUUCUUU-CCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4301_c1_g1_1096_TPlot.pdf
TRINITY_DN4301_c1_g1:623	si_s77	TRINITY_DN4301_c1_g1	611	632	623	-25.50	-18.40	0.72156862745098	6.5	1-12,632-621;13-18,619-614	x-x,620-620[BULt];19-21,613-611[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AUUGAGAGGUAGAGAAAAAAAA&UUUUUUUUCUUU-CCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4301_c1_g1_623_TPlot.pdf
TRINITY_DN4301_c1_g1:626	si_s74	TRINITY_DN4301_c1_g1	614	635	626	-25.00	-18.00	0.72	7	4-15,632-621;16-21,619-614	1-3,635-633[UP5];x-x,620-620[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAGAGGUAGAGAAAAAAAAAGA&CUAUUUUUUUUCUUU-CCUUUC	4	0.99999999996328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4301_c1_g1_626_TPlot.pdf
TRINITY_DN4301_c1_g1:860	si_s74	TRINITY_DN4301_c1_g1	848	869	860	-25.00	-18.00	0.72	7	4-15,866-855;16-21,853-848	1-3,869-867[UP5];x-x,854-854[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAGAGGUAGAGAAAAAAAAAGA&CUAUUUUUUUUCUUU-CCUUUC	3	0.999999999978779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4301_c1_g1_860_TPlot.pdf
TRINITY_DN4301_c1_g1:861	si_s73	TRINITY_DN4301_c1_g1	849	869	861	-24.00	-16.60	0.691666666666667	4	1-3,869-867;5-16,866-855;17-21,853-849	4-4,x-x[BULq];x-x,854-854[BULt]	(((((.((((((((((((-(((&))).))))))))))))-)))))	AGAGGUAGAGAAAAAAAA-AGA&UCUAUUUUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4301_c1_g1_861_TPlot.pdf
TRINITY_DN4302_c0_g1:135	si_a128	TRINITY_DN4302_c0_g1	124	144	135	-23.20	-15.10	0.650862068965517	4.5	2-13,143-132;15-19,130-126	1-1,144-144[UP5];14-14,131-131[SIL];20-21,125-124[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	ACUAAUUCUUAUUGCUAUAAU&UUUAUAGCAAUAGUAAUUAAU	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN4302_c0_g1_135_TPlot.pdf
TRINITY_DN4302_c0_g1:136	si_a127	TRINITY_DN4302_c0_g1	125	145	136	-23.10	-15.10	0.653679653679654	5.5	3-14,143-132;16-20,130-126	1-2,145-144[UP5];15-15,131-131[SIL];21-21,125-125[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	CUAAUUCUUAUUGCUAUAAUU&UUUUAUAGCAAUAGUAAUUAA	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN4302_c0_g1_136_TPlot.pdf
TRINITY_DN4305_c0_g1:280	si_a58	TRINITY_DN4305_c0_g1	265	292	280	-34.60	-22.70	0.65606936416185	13	2-8,291-285;9-16,281-274;17-20,269-266	1-1,292-292[UP5];x-x,284-282[BULt];x-x,273-270[BULt];21-21,265-265[UP3]	.((((....((((((((...(((((((.&.)))))))---))))))))----)))).	AUUGAUCUCAAGAAGCGGGAGGUCGACA&AGUCGACU---CGCUUCUU----UCAAA	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN4305_c0_g1_280_TPlot.pdf
TRINITY_DN4305_c0_g1:286	si_a494	TRINITY_DN4305_c0_g1	276	296	286	-29.50	-20.20	0.684745762711864	8	2-9,295-288;10-16,286-280;18-21,279-276	1-1,296-296[UP5];x-x,287-287[BULt];17-17,x-x[BULq]	((((-(((((((.((((((((.&.))))))))-))))))).))))	GAAG-CGGGAGGUCGACAUGUC&AAUAUGUCG-UUUUUCGUCUUC	4	0.99999995260776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN4305_c0_g1_286_TPlot.pdf
TRINITY_DN4305_c0_g1:288	si_a631	TRINITY_DN4305_c0_g1	271	297	288	-25.70	-17.00	0.66147859922179	20	4-12,294-286;13-21,279-271	1-3,297-295[UP5];x-x,285-280[BULt]	(((((((((......(((((((((...&...)))))))))------)))))))))	CUCAAGAAGCGGGAGGUCGACAUGUCG&UAUUAUGUCGAU------UUUUUUGAG	4	0.999999767725432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4305_c0_g1_288_TPlot.pdf
TRINITY_DN4305_c0_g1:351	si_s218	TRINITY_DN4305_c0_g1	340	365	351	-35.50	-24.30	0.684507042253521	17	1-4,365-362;5-8,356-353;11-20,350-341	x-x,361-357[BULt];9-10,352-351[SIL];21-21,340-340[UP3]	.((((((((((..((((.....((((&))))-----))))..)))))))))).	CGUUUACGCGGGUUCGACAUGGGCAC&GUGU-----UCGAAACCGCGUGAAUA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN4305_c0_g1_351_TPlot.pdf
TRINITY_DN4305_c0_g1:352	si_s217	TRINITY_DN4305_c0_g1	341	366	352	-35.80	-24.10	0.6731843575419	17	2-5,365-362;6-9,356-353;12-21,350-341	1-1,366-366[UP5];x-x,361-357[BULt];10-11,352-351[SIL]	((((((((((..((((.....((((.&.))))-----))))..))))))))))	GUUUACGCGGGUUCGACAUGGGCACC&UGUGU-----UCGAAACCGCGUGAAU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN4305_c0_g1_352_TPlot.pdf
TRINITY_DN4305_c0_g1:413	si_s856	TRINITY_DN4305_c0_g1	403	422	413	-43.30	-29.70	0.685912240184757	8	1-10,422-413;14-20,410-404	11-13,412-411[AILq];21-21,403-403[UP3]	.(((((((..-((((((((((&))))))))))...))))))).	AUGGUGGGGG-AGGGGUCGAC&GUCGACUCCUAGACCUACCGG	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s856_TRINITY_DN4305_c0_g1_413_TPlot.pdf
TRINITY_DN4305_c0_g1:414	si_s855	TRINITY_DN4305_c0_g1	404	423	414	-41.60	-29.70	0.713942307692308	7.5	2-11,422-413;15-20,410-405	1-1,423-423[UP5];12-14,412-411[AILq];21-21,404-404[UP3]	.((((((..-((((((((((.&.))))))))))...)))))).	UGGUGGGGG-AGGGGUCGACG&AGUCGACUCCUAGACCUACCG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s855_TRINITY_DN4305_c0_g1_414_TPlot.pdf
TRINITY_DN4305_c0_g1:415	si_s854	TRINITY_DN4305_c0_g1	405	424	415	-42.10	-29.00	0.688836104513064	7.5	3-12,422-413;16-21,410-405	1-2,424-423[UP5];13-15,412-411[AILq]	((((((..-((((((((((..&..))))))))))...))))))	GGUGGGGG-AGGGGUCGACGG&GAGUCGACUCCUAGACCUACC	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s854_TRINITY_DN4305_c0_g1_415_TPlot.pdf
TRINITY_DN4305_c0_g1:417	si_a668	TRINITY_DN4305_c0_g1	406	425	417	-33.20	-21.60	0.650602409638554	9.5	1-3,425-423;6-15,421-412;17-21,410-406	4-5,422-422[AILq];16-16,411-411[SIL]	(((((.((((((((((.-(((&)))..)))))))))).)))))	GUGGGGGAGGGGUCGAC-GGC&GCCUAUUGAUUCCUUAUUCAC	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN4305_c0_g1_417_TPlot.pdf
TRINITY_DN4305_c0_g1:772	si_s888	TRINITY_DN4305_c0_g1	761	781	772	-26.80	-18.70	0.697761194029851	17.5	10-21,772-761	1-9,781-773[UP5]	((((((((((((.........&.........))))))))))))	AAGAGAGAGCCUUUCCUGGAA&AAAAUAAAUAGGCUUUCUCUU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN4305_c0_g1_772_TPlot.pdf
TRINITY_DN4309_c0_g1:4158	si_a499	TRINITY_DN4309_c0_g1	4145	4169	4158	-35.20	-24.60	0.698863636363636	11.5	1-6,4169-4164;7-19,4161-4149;20-21,4146-4145	x-x,4163-4162[BULt];x-x,4148-4147[BULt]	((..(((((((((((((..((((((&))))))--)))))))))))))--))	CCGAGAGGGGGGCGAAGGCAGCGGC&GUCGUU--UUUCGUCUUCCUU--GG	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4309_c0_g1_4158_TPlot.pdf
TRINITY_DN4309_c0_g1:4836	si_a408	TRINITY_DN4309_c0_g1	4825	4845	4836	-20.10	-13.50	0.671641791044776	11	1-13,4845-4833	14-21,4832-4825[UP3]	........(((((((((((((&)))))))))))))........	AACACGCCUGUGAACAGAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999989789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4309_c0_g1_4836_TPlot.pdf
TRINITY_DN4309_c0_g1:4838	si_a406	TRINITY_DN4309_c0_g1	4827	4847	4838	-19.80	-13.70	0.691919191919192	11.5	3-15,4845-4833	1-2,4847-4846[UP5];16-21,4832-4827[UP3]	......(((((((((((((..&..)))))))))))))......	CACGCCUGUGAACAGAACAGA&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999999932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4309_c0_g1_4838_TPlot.pdf
TRINITY_DN4309_c0_g1:4839	si_a405	TRINITY_DN4309_c0_g1	4828	4848	4839	-19.80	-13.70	0.691919191919192	12	4-16,4845-4833	1-3,4848-4846[UP5];17-21,4832-4828[UP3]	.....(((((((((((((...&...))))))))))))).....	ACGCCUGUGAACAGAACAGAG&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4309_c0_g1_4839_TPlot.pdf
TRINITY_DN4309_c0_g1:4936	si_s219	TRINITY_DN4309_c0_g1	4925	4946	4936	-33.80	-22.80	0.674556213017752	8.5	1-8,4946-4939;10-15,4936-4931;17-20,4929-4926	9-9,4938-4937[AILt];16-16,4930-4930[SIL];21-21,4925-4925[UP3]	.((((.((((((..((((((((&))))))))-.)))))).)))).	CUGUUGACGUGGACUUCGAGCA&UGUUCGAA-ACCGCGUGAAUAA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN4309_c0_g1_4936_TPlot.pdf
TRINITY_DN430_c0_g1:2732	si_a409	TRINITY_DN430_c0_g1	2720	2741	2732	-19.50	-14.10	0.723076923076923	10.5	1-11,2741-2731;13-19,2728-2722	12-12,2730-2729[AILt];20-21,2721-2720[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	CGAUUUAGAGAAUGAACAGGGC&GUUUUGUUUAU-AUUUAAAUAA	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN430_c0_g1_2732_TPlot.pdf
TRINITY_DN430_c0_g1:2733	si_a408	TRINITY_DN430_c0_g1	2721	2742	2733	-20.10	-15.10	0.751243781094527	8.5	1-12,2742-2731;14-20,2728-2722	13-13,2730-2729[AILt];21-21,2721-2721[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	GAUUUAGAGAAUGAACAGGGCA&UGUUUUGUUUAU-AUUUAAAUA	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN430_c0_g1_2733_TPlot.pdf
TRINITY_DN430_c0_g1:2734	si_a407	TRINITY_DN430_c0_g1	2722	2743	2734	-19.80	-15.40	0.777777777777778	6.5	1-13,2743-2731;15-21,2728-2722	14-14,2730-2729[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	AUUUAGAGAAUGAACAGGGCAA&UUGUUUUGUUUAU-AUUUAAAU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN430_c0_g1_2734_TPlot.pdf
TRINITY_DN430_c0_g1:2735	si_a406	TRINITY_DN430_c0_g1	2723	2744	2735	-19.80	-15.50	0.782828282828283	6.5	1-14,2744-2731;16-21,2728-2723	15-15,2730-2729[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	UUUAGAGAAUGAACAGGGCAAU&AUUGUUUUGUUUAU-AUUUAAA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN430_c0_g1_2735_TPlot.pdf
TRINITY_DN430_c0_g1:2736	si_a405	TRINITY_DN430_c0_g1	2724	2745	2736	-19.80	-14.90	0.752525252525252	7	2-15,2744-2731;17-21,2728-2724	1-1,2745-2745[UP5];16-16,2730-2729[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	UUAGAGAAUGAACAGGGCAAUA&AAUUGUUUUGUUUAU-AUUUAA	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN430_c0_g1_2736_TPlot.pdf
TRINITY_DN430_c0_g1:3031	si_s810	TRINITY_DN430_c0_g1	3020	3040	3031	-27.90	-19.10	0.684587813620072	8.5	1-7,3040-3034;9-16,3032-3025	8-8,3033-3033[SIL];17-21,3024-3020[UP3]	.....((((((((.(((((((&))))))).)))))))).....	UCAGUAGAGAAGGCAACGAGG&CUUCGUUACCUUUUCUUAAUA	4	0.999986162919743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN430_c0_g1_3031_TPlot.pdf
TRINITY_DN430_c0_g1:3379	si_a407	TRINITY_DN430_c0_g1	3368	3388	3379	-19.80	-16.40	0.828282828282828	9.5	3-18,3386-3371	1-2,3388-3387[UP5];19-21,3370-3368[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACAUAAGUAUGAGCAAAGCUG&UUGUUUUGUUUAUAUUUAAAU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN430_c0_g1_3379_TPlot.pdf
TRINITY_DN430_c0_g1:3401	si_a484	TRINITY_DN430_c0_g1	3390	3411	3401	-27.30	-17.80	0.652014652014652	9.5	1-4,3411-3408;7-19,3404-3392	5-6,3407-3405[AILt];20-21,3391-3390[UP3]	..(((((((((((((...((((&))))-..)))))))))))))..	GCUGACAUAUUCUAUUGAGACA&UGUU-AUAUAGAAUAUGUCGUU	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN430_c0_g1_3401_TPlot.pdf
TRINITY_DN430_c0_g1:3571	si_s490	TRINITY_DN430_c0_g1	3560	3580	3571	-17.80	-13.20	0.741573033707865	6	1-11,3580-3570;14-20,3567-3561	12-13,3569-3568[SIL];21-21,3560-3560[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AUUUGUUUUGAUUUAGGUAAA&UUUAUUUAAAUAUAAACAAAA	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN430_c0_g1_3571_TPlot.pdf
TRINITY_DN430_c0_g1:3572	si_s489	TRINITY_DN430_c0_g1	3561	3581	3572	-17.90	-13.00	0.726256983240223	5	2-12,3580-3570;15-21,3567-3561	1-1,3581-3581[UP5];13-14,3569-3568[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	UUUGUUUUGAUUUAGGUAAAG&AUUUAUUUAAAUAUAAACAAA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN430_c0_g1_3572_TPlot.pdf
TRINITY_DN430_c0_g1:3601	si_s8	TRINITY_DN430_c0_g1	3590	3610	3601	-21.30	-14.80	0.694835680751174	7	2-12,3609-3599;15-18,3596-3593	1-1,3610-3610[UP5];13-14,3598-3597[SIL];19-21,3592-3590[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	UACAUAGGUAUAGUAAGUAAA&AUUACUUAUUAUUACUAUAUU	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN430_c0_g1_3601_TPlot.pdf
TRINITY_DN4310_c0_g1:1269	si_a156	TRINITY_DN4310_c0_g1	1253	1278	1269	-28.90	-19.00	0.657439446366782	15	1-10,1278-1269;11-19,1263-1255	x-x,1268-1264[BULt];20-21,1254-1253[UP3]	..(((((((((.....((((((((((&))))))))))-----)))))))))..	CUGGUAGAUUGCCCAAACCUUGGAAC&GUUUUAAGGU-----CAAUCUAUUCA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a156_TRINITY_DN4310_c0_g1_1269_TPlot.pdf
TRINITY_DN4310_c0_g1:1270	si_a155	TRINITY_DN4310_c0_g1	1254	1279	1270	-28.90	-20.00	0.69204152249135	14	1-11,1279-1269;12-20,1263-1255	x-x,1268-1264[BULt];21-21,1254-1254[UP3]	.(((((((((.....(((((((((((&)))))))))))-----))))))))).	UGGUAGAUUGCCCAAACCUUGGAACA&UGUUUUAAGGU-----CAAUCUAUUC	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a155_TRINITY_DN4310_c0_g1_1270_TPlot.pdf
TRINITY_DN4310_c0_g1:1271	si_a154	TRINITY_DN4310_c0_g1	1255	1280	1271	-27.00	-20.70	0.766666666666667	13	1-12,1280-1269;13-21,1263-1255	x-x,1268-1264[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	GGUAGAUUGCCCAAACCUUGGAACAA&UUGUUUUAAGGU-----CAAUCUAUU	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN4310_c0_g1_1271_TPlot.pdf
TRINITY_DN4310_c0_g1:1272	si_a153	TRINITY_DN4310_c0_g1	1256	1281	1272	-28.70	-21.70	0.75609756097561	8	1-13,1281-1269;14-21,1263-1256	x-x,1268-1264[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	GUAGAUUGCCCAAACCUUGGAACAAU&GUUGUUUUAAGGU-----CAAUCUAU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN4310_c0_g1_1272_TPlot.pdf
TRINITY_DN4310_c0_g1:1273	si_a152	TRINITY_DN4310_c0_g1	1257	1282	1273	-29.20	-20.50	0.702054794520548	9	2-14,1281-1269;15-21,1263-1257	1-1,1282-1282[UP5];x-x,1268-1264[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	UAGAUUGCCCAAACCUUGGAACAAUG&UGUUGUUUUAAGGU-----CAAUCUA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN4310_c0_g1_1273_TPlot.pdf
TRINITY_DN4310_c0_g1:1278	si_a147	TRINITY_DN4310_c0_g1	1267	1287	1278	-30.40	-21.10	0.694078947368421	7	1-3,1287-1285;5-19,1283-1269	4-4,1284-1284[SIL];20-21,1268-1267[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AAACCUUGGAACAAUGAGGAU&AUCGUUGUUGUUUUAAGGUCA	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN4310_c0_g1_1278_TPlot.pdf
TRINITY_DN4310_c0_g1:1279	si_a146	TRINITY_DN4310_c0_g1	1268	1288	1279	-29.70	-21.40	0.72053872053872	7	2-4,1287-1285;6-20,1283-1269	1-1,1288-1288[UP5];5-5,1284-1284[SIL];21-21,1268-1268[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	AACCUUGGAACAAUGAGGAUG&AAUCGUUGUUGUUUUAAGGUC	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN4310_c0_g1_1279_TPlot.pdf
TRINITY_DN4310_c0_g1:1281	si_a144	TRINITY_DN4310_c0_g1	1270	1290	1281	-27.40	-20.10	0.733576642335766	10	4-6,1287-1285;8-21,1283-1270	1-3,1290-1288[UP5];7-7,1284-1284[SIL]	((((((((((((((.(((...&...))).))))))))))))))	CCUUGGAACAAUGAGGAUGCC&UUAAUCGUUGUUGUUUUAAGG	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN4310_c0_g1_1281_TPlot.pdf
TRINITY_DN4310_c0_g1:1282	si_a143	TRINITY_DN4310_c0_g1	1271	1291	1282	-25.10	-16.40	0.653386454183267	12	5-7,1287-1285;9-21,1283-1271	1-4,1291-1288[UP5];8-8,1284-1284[SIL]	(((((((((((((.(((....&....))).)))))))))))))	CUUGGAACAAUGAGGAUGCCU&AUUAAUCGUUGUUGUUUUAAG	3	0.999999981667634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN4310_c0_g1_1282_TPlot.pdf
TRINITY_DN4310_c0_g1:1605	si_s76	TRINITY_DN4310_c0_g1	1590	1614	1605	-23.60	-15.70	0.665254237288135	15.5	4-11,1611-1604;12-20,1599-1591	1-3,1614-1612[UP5];x-x,1603-1600[BULt];21-21,1590-1590[UP3]	.(((((((((....((((((((...&...))))))))----))))))))).	UGGAAAGGAAUUCCAGAAAAGAUUG&AUUUUUUUUCU----UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4310_c0_g1_1605_TPlot.pdf
TRINITY_DN4310_c0_g1:1606	si_s75	TRINITY_DN4310_c0_g1	1591	1615	1606	-24.00	-15.70	0.654166666666667	16.5	5-12,1611-1604;13-21,1599-1591	1-4,1615-1612[UP5];x-x,1603-1600[BULt]	(((((((((....((((((((....&....))))))))----)))))))))	GGAAAGGAAUUCCAGAAAAGAUUGG&UAUUUUUUUUCU----UUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4310_c0_g1_1606_TPlot.pdf
TRINITY_DN4310_c0_g1:2698	si_a675	TRINITY_DN4310_c0_g1	2682	2707	2698	-34.00	-22.30	0.655882352941176	15.5	3-10,2705-2698;11-21,2692-2682	1-2,2707-2706[UP5];x-x,2697-2693[BULt]	(((((((((((.....((((((((..&..))))))))-----)))))))))))	GGAUCGCGUGACUCAAAUAAGGGAGG&GAUUCCUUAU-----UCACGCGGUUU	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN4310_c0_g1_2698_TPlot.pdf
TRINITY_DN4310_c0_g1:2988	si_s525	TRINITY_DN4310_c0_g1	2977	2997	2988	-24.00	-15.60	0.65	12	6-20,2992-2978	1-5,2997-2993[UP5];21-21,2977-2977[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUUAAGAAUGGUUUCGUUAAC&UAAUUCGAAAUCAUUUUUGAU	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN4310_c0_g1_2988_TPlot.pdf
TRINITY_DN4310_c0_g1:3084	si_a114	TRINITY_DN4310_c0_g1	3073	3093	3084	-27.90	-20.80	0.745519713261649	13	6-21,3088-3073	1-5,3093-3089[UP5]	((((((((((((((((.....&.....))))))))))))))))	CUGUGGGACAGGUUCGAGGUG&AAAUACGAGCUUGUUUUAUAG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN4310_c0_g1_3084_TPlot.pdf
TRINITY_DN4311_c0_g1:177	si_a862	TRINITY_DN4311_c0_g1	166	186	177	-22.70	-16.20	0.713656387665198	9.5	2-8,185-179;11-19,176-168	1-1,186-186[UP5];9-10,178-177[SIL];20-21,167-166[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	UUGAUCUUUGACCGUUGGAUG&AAUCCAAUUAUUAAAGAUUUA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN4311_c0_g1_177_TPlot.pdf
TRINITY_DN4312_c0_g1:1203	si_a145	TRINITY_DN4312_c0_g1	1192	1212	1203	-28.10	-19.10	0.679715302491103	12.5	7-21,1206-1192	1-6,1212-1207[UP5]	(((((((((((((((......&......)))))))))))))))	GCCUUGGAACAACAAGUUCUU&UAAUCGUUGUUGUUUUAAGGU	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN4312_c0_g1_1203_TPlot.pdf
TRINITY_DN4312_c0_g1:3614	si_s287	TRINITY_DN4312_c0_g1	3603	3623	3614	-35.30	-23.80	0.674220963172805	11	3-9,3621-3615;12-18,3612-3606	1-2,3623-3622[UP5];10-11,3614-3613[SIL];19-21,3605-3603[UP3]	...(((((((..(((((((..&..)))))))..)))))))...	GGCCCAAUCGCGUGGGCGUUA&AUACGCCUAGUCGAUUGGAAU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s287_TRINITY_DN4312_c0_g1_3614_TPlot.pdf
TRINITY_DN4313_c0_g1:3603	si_a790	TRINITY_DN4313_c0_g1	3592	3612	3603	-25.80	-19.50	0.755813953488372	10	1-17,3612-3596	18-21,3595-3592[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAAGGGAAAGUGGGGGAAUGG&CUAUUUUUCUAUUUUCCAAUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4313_c0_g1_3603_TPlot.pdf
TRINITY_DN43158_c0_g1:278	si_a784	TRINITY_DN43158_c0_g1	267	287	278	-24.70	-20.30	0.821862348178138	5	2-7,286-281;9-21,279-267	1-1,287-287[UP5];8-8,280-280[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	AAAAUAGAAAGAUUGGAGAGG&ACUCUUCUAUUUUUCUAUUUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN43158_c0_g1_278_TPlot.pdf
TRINITY_DN431_c0_g1:1831	si_s9	TRINITY_DN431_c0_g1	1820	1840	1831	-22.90	-15.48	0.675982532751092	9	3-5,1838-1836;9-21,1832-1820	1-2,1840-1839[UP5];6-8,1835-1833[SIL]	(((((((((((((...(((..&..)))...)))))))))))))	CAAUAUAGUAAUAUAUAGUCA&UUACUUAUUAUUACUAUAUUG	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN431_c0_g1_1831_TPlot.pdf
TRINITY_DN4322_c0_g1:104	si_a463	TRINITY_DN4322_c0_g1	93	113	104	-19.70	-12.90	0.654822335025381	7.5	1-8,113-106;11-19,103-95	9-10,105-104[SIL];20-21,94-93[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	AAAAUUGCAUAACAUAUGUAA&UUAUAUAUAAUAUGUAAUUAU	2	0.998779475043878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN4322_c0_g1_104_TPlot.pdf
TRINITY_DN4323_c0_g1:1039	si_a640	TRINITY_DN4323_c0_g1	1028	1048	1039	-24.10	-18.80	0.780082987551867	4	2-14,1047-1035;16-21,1033-1028	1-1,1048-1048[UP5];15-15,1034-1034[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	GGUGUAGUACUCAAAAGAAUG&GAUUUUUUUGAGUAAUAUAUC	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN4323_c0_g1_1039_TPlot.pdf
TRINITY_DN4323_c0_g1:178	si_s693	TRINITY_DN4323_c0_g1	167	187	178	-23.90	-16.10	0.673640167364017	9.5	3-18,185-170	1-2,187-186[UP5];19-21,169-167[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUUAAAUUGGCUGAUUGAUA&GUUUAAUUAGUCGAUUUAUUA	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN4323_c0_g1_178_TPlot.pdf
TRINITY_DN4323_c0_g1:179	si_s692	TRINITY_DN4323_c0_g1	168	188	179	-24.20	-16.10	0.665289256198347	10.5	4-19,185-170	1-3,188-186[UP5];20-21,169-168[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUUAAAUUGGCUGAUUGAUAA&AGUUUAAUUAGUCGAUUUAUU	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN4323_c0_g1_179_TPlot.pdf
TRINITY_DN4323_c0_g1:1851	si_a310	TRINITY_DN4323_c0_g1	1840	1859	1851	-33.70	-22.10	0.655786350148368	8	1-7,1859-1853;9-18,1852-1843	8-8,x-x[BULq];19-21,1842-1840[UP3]	...((((((((((-(((((((&))))))).))))))))))...	CGAGUGGGUGAGU-CAAGCGA&UCGCUUGGAUUUAUCCAUGAU	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN4323_c0_g1_1851_TPlot.pdf
TRINITY_DN4323_c0_g1:1852	si_a309	TRINITY_DN4323_c0_g1	1841	1860	1852	-33.60	-22.80	0.678571428571429	6.5	1-8,1860-1853;10-19,1852-1843	9-9,x-x[BULq];20-21,1842-1841[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	GAGUGGGUGAGU-CAAGCGAA&UUCGCUUGGAUUUAUCCAUGA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN4323_c0_g1_1852_TPlot.pdf
TRINITY_DN4323_c0_g1:1928	si_a411	TRINITY_DN4323_c0_g1	1914	1937	1928	-17.90	-12.00	0.670391061452514	8	2-13,1936-1925;14-21,1921-1914	1-1,1937-1937[UP5];x-x,1924-1922[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	AUUUAUUUUCCAAAUGUAGGCAGC&UUUGUUUAUAUUU---AAAUAAAU	3	0.99999999873322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4323_c0_g1_1928_TPlot.pdf
TRINITY_DN4323_c0_g1:1946	si_a403	TRINITY_DN4323_c0_g1	1925	1955	1946	-22.00	-14.50	0.659090909090909	24.5	2-10,1954-1946;11-21,1935-1925	1-1,1955-1955[UP5];x-x,1945-1936[BULt]	(((((((((((..........(((((((((.&.)))))))))----------)))))))))))	AAAUGUAGGCAGCAACUUUUGGAACAGUUCG&AGAAUUGUUU----------UGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN4323_c0_g1_1946_TPlot.pdf
TRINITY_DN4323_c0_g1:210	si_a499	TRINITY_DN4323_c0_g1	198	219	210	-35.20	-24.50	0.696022727272727	8	1-8,219-212;10-12,210-208;13-21,206-198	9-9,211-211[SIL];x-x,207-207[BULt]	(((((((((.(((.((((((((&)))))))).)))-)))))))))	CUAAGGAGGAACGCAAGAUGGC&GUCGUUUUUCGU-CUUCCUUGG	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4323_c0_g1_210_TPlot.pdf
TRINITY_DN43243_c0_g1:131	si_a409	TRINITY_DN43243_c0_g1	120	140	131	-19.50	-13.70	0.702564102564103	10	1-15,140-126	16-21,125-120[UP3]	......(((((((((((((((&)))))))))))))))......	AUCAAAAAAUAUGAAUAGAGC&GUUUUGUUUAUAUUUAAAUAA	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN43243_c0_g1_131_TPlot.pdf
TRINITY_DN43243_c0_g1:134	si_a406	TRINITY_DN43243_c0_g1	123	143	134	-19.80	-15.60	0.787878787878788	8	2-18,142-126	1-1,143-143[UP5];19-21,125-123[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAAAAAUAUGAAUAGAGCAAG&AUUGUUUUGUUUAUAUUUAAA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN43243_c0_g1_134_TPlot.pdf
TRINITY_DN4325_c0_g1:1016	si_s71	TRINITY_DN4325_c0_g1	1005	1025	1016	-25.70	-17.00	0.66147859922179	7.5	1-5,1025-1021;7-12,1019-1014;15-21,1011-1005	6-6,1020-1020[SIL];13-14,1013-1012[SIL]	(((((((..((((((.(((((&))))).))))))..)))))))	GGGAAAGCCGAAGAAAGGAAG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4325_c0_g1_1016_TPlot.pdf
TRINITY_DN4327_c0_g1:520	si_a66	TRINITY_DN4327_c0_g1	509	529	520	-26.70	-19.10	0.715355805243446	8	1-15,529-515	16-21,514-509[UP3]	......(((((((((((((((&)))))))))))))))......	AUGGAAAAUUUGAAAGAGGUG&CGCUUCUUUCAAAUUGUUUUU	3	0.999837544122648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4327_c0_g1_520_TPlot.pdf
TRINITY_DN4327_c0_g1:521	si_a65	TRINITY_DN4327_c0_g1	510	530	521	-27.70	-19.30	0.696750902527076	7.5	1-16,530-515	17-21,514-510[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGGAAAAUUUGAAAGAGGUGG&UCGCUUCUUUCAAAUUGUUUU	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN4327_c0_g1_521_TPlot.pdf
TRINITY_DN4327_c0_g1:522	si_a64	TRINITY_DN4327_c0_g1	511	531	522	-29.40	-19.40	0.659863945578231	8	2-17,530-515	1-1,531-531[UP5];18-21,514-511[UP3]	....((((((((((((((((.&.))))))))))))))))....	GGAAAAUUUGAAAGAGGUGGC&CUCGCUUCUUUCAAAUUGUUU	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN4327_c0_g1_522_TPlot.pdf
TRINITY_DN4327_c0_g1:527	si_s894	TRINITY_DN4327_c0_g1	515	536	527	-29.10	-19.00	0.652920962199313	10	2-8,535-529;10-15,527-522;16-18,520-518	1-1,536-536[UP5];9-9,528-528[SIL];x-x,521-521[BULt];19-21,517-515[UP3]	...(((.((((((.(((((((.&.))))))).))))))-)))...	AAUUUGAAAGAGGUGGCCUGUA&AAUAGGCUUUCUCUU-CAAUUU	3	0.999999999951334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4327_c0_g1_527_TPlot.pdf
TRINITY_DN4328_c0_g1:3116	si_s1	TRINITY_DN4328_c0_g1	3105	3125	3116	-18.70	-13.00	0.695187165775401	6	1-13,3125-3113;16-18,3110-3108	14-15,3112-3111[SIL];19-21,3107-3105[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	AUCUAAGUAGUAAUAUAGAAA&UUUUUAUAUUACUUAUUAUUA	2	0.999537689506999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN4328_c0_g1_3116_TPlot.pdf
TRINITY_DN4328_c0_g1:3328	si_s488	TRINITY_DN4328_c0_g1	3316	3337	3328	-18.30	-12.10	0.66120218579235	4.5	1-14,3337-3324;17-21,3320-3316	15-16,3323-3321[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	UUGUUAAUUAUUUAAGUAAAUG&UAUUUAUUUAAAUA-UAAACAA	2	0.993610737462659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN4328_c0_g1_3328_TPlot.pdf
TRINITY_DN4329_c0_g1:505	si_s47	TRINITY_DN4329_c0_g1	491	514	505	-26.30	-18.50	0.703422053231939	8.5	2-7,513-508;9-15,506-500;16-21,496-491	1-1,514-514[UP5];8-8,507-507[SIL];x-x,499-497[BULt]	((((((...(((((((.((((((.&.)))))).)))))))---))))))	CUGACUUAGUGAAGUCGAAUUGUA&AAUAAUUGGAUUUCA---AGUUAG	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN4329_c0_g1_505_TPlot.pdf
TRINITY_DN432_c0_g1:2601	si_a719	TRINITY_DN432_c0_g1	2590	2610	2601	-34.60	-22.50	0.65028901734104	17	8-18,2603-2593	1-7,2610-2604[UP5];19-21,2592-2590[UP3]	...(((((((((((.......&.......)))))))))))...	UCCGCCCGAGUGACAACCAUU&AAUAAUCGUUACUCGGGCAUC	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN432_c0_g1_2601_TPlot.pdf
TRINITY_DN432_c0_g1:2602	si_a718	TRINITY_DN432_c0_g1	2591	2611	2602	-32.60	-22.50	0.690184049079755	18	9-19,2603-2593	1-8,2611-2604[UP5];20-21,2592-2591[UP3]	..(((((((((((........&........)))))))))))..	CCGCCCGAGUGACAACCAUUG&AAAUAAUCGUUACUCGGGCAU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN432_c0_g1_2602_TPlot.pdf
TRINITY_DN432_c0_g2:1048	si_a630	TRINITY_DN432_c0_g2	1037	1058	1048	-25.80	-16.90	0.655038759689922	12.5	1-2,1058-1057;7-20,1051-1038	3-6,1056-1052[AILt];21-21,1037-1037[UP3]	.((((((((((((((.....((&))-....)))))))))))))).	GCAAAGAAAUCGACGACAGGAC&GU-AUUAUGUCGAUUUUUUUGA	4	0.999999985978956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN432_c0_g2_1048_TPlot.pdf
TRINITY_DN432_c0_g2:3728	si_a497	TRINITY_DN432_c0_g2	3717	3737	3728	-32.00	-20.90	0.653125	10.5	6-12,3732-3726;14-21,3724-3717	1-5,3737-3733[UP5];13-13,3725-3725[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AAGGAGGAGGAAAAACUAAAA&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN432_c0_g2_3728_TPlot.pdf
TRINITY_DN4330_c0_g1:144	si_s89	TRINITY_DN4330_c0_g1	132	154	144	-35.30	-24.00	0.679886685552408	7	1-5,154-150;6-15,148-139;16-19,137-134	x-x,149-149[BULt];x-x,138-138[BULt];20-21,133-132[UP3]	..((((.((((((((((.(((((&)))))-))))))))))-))))..	CAAAGCUGAAGAAGAGGAAGAGG&CCUUU-CUUCUUCUUC-GCUUCG	4	0.999999999974676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4330_c0_g1_144_TPlot.pdf
TRINITY_DN4330_c0_g1:145	si_s88	TRINITY_DN4330_c0_g1	133	155	145	-34.80	-25.60	0.735632183908046	6	1-6,155-150;7-16,148-139;17-20,137-134	x-x,149-149[BULt];x-x,138-138[BULt];21-21,133-133[UP3]	.((((.((((((((((.((((((&))))))-))))))))))-)))).	AAAGCUGAAGAAGAGGAAGAGGA&UCCUUU-CUUCUUCUUC-GCUUC	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4330_c0_g1_145_TPlot.pdf
TRINITY_DN4330_c0_g1:147	si_s86	TRINITY_DN4330_c0_g1	135	157	147	-32.90	-25.80	0.78419452887538	6	2-8,156-150;9-18,148-139;19-21,137-135	1-1,157-157[UP5];x-x,149-149[BULt];x-x,138-138[BULt]	(((.((((((((((.(((((((.&.)))))))-))))))))))-)))	AGCUGAAGAAGAGGAAGAGGAAG&UUUCCUUU-CUUCUUCUUC-GCU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4330_c0_g1_147_TPlot.pdf
TRINITY_DN4330_c0_g1:149	si_s84	TRINITY_DN4330_c0_g1	138	158	149	-32.30	-24.60	0.761609907120743	5.5	1-6,158-153;8-21,151-138	7-7,152-152[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	UGAAGAAGAGGAAGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4330_c0_g1_149_TPlot.pdf
TRINITY_DN4330_c0_g1:150	si_s83	TRINITY_DN4330_c0_g1	139	159	150	-30.90	-24.50	0.792880258899676	4.5	1-7,159-153;9-21,151-139	8-8,152-152[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAAGAAGAGGAAGAGGAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4330_c0_g1_150_TPlot.pdf
TRINITY_DN4330_c0_g1:153	si_s80	TRINITY_DN4330_c0_g1	142	162	153	-28.20	-19.50	0.691489361702128	9.5	4-10,159-153;12-21,151-142	1-3,162-160[UP5];11-11,152-152[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GAAGAGGAAGAGGAAGAAUUG&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4330_c0_g1_153_TPlot.pdf
TRINITY_DN4330_c0_g1:155	si_a498	TRINITY_DN4330_c0_g1	144	164	155	-33.50	-22.30	0.665671641791045	8.5	1-3,164-162;5-11,160-154;13-20,152-145	4-4,161-161[SIL];12-12,153-153[SIL];21-21,144-144[UP3]	.((((((((.(((((((.(((&))).))))))).)))))))).	AGAGGAAGAGGAAGAAUUGCA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999999997518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4330_c0_g1_155_TPlot.pdf
TRINITY_DN4330_c0_g1:156	si_a497	TRINITY_DN4330_c0_g1	145	165	156	-32.00	-22.30	0.696875	7.5	2-4,164-162;6-12,160-154;14-21,152-145	1-1,165-165[UP5];5-5,161-161[SIL];13-13,153-153[SIL]	((((((((.(((((((.(((.&.))).))))))).))))))))	GAGGAAGAGGAAGAAUUGCAA&AUGUCGUUUUUCGUCUUCCUU	3	0.999999983432403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4330_c0_g1_156_TPlot.pdf
TRINITY_DN4330_c0_g1:292	si_a635	TRINITY_DN4330_c0_g1	281	305	292	-26.10	-18.10	0.693486590038314	12	1-7,305-299;8-21,294-281	x-x,298-295[BULt]	((((((((((((((....(((((((&)))))))----))))))))))))))	AUUGCUCAGAAGAACUUUUUGAUAU&AUGUCGA----UUUUUUUGAGUAAU	2	0.999414355145247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4330_c0_g1_292_TPlot.pdf
TRINITY_DN4330_c0_g1:293	si_a634	TRINITY_DN4330_c0_g1	282	306	293	-26.40	-17.70	0.670454545454545	12.5	1-8,306-299;9-21,294-282	x-x,298-295[BULt]	(((((((((((((....((((((((&))))))))----)))))))))))))	UUGCUCAGAAGAACUUUUUGAUAUG&UAUGUCGA----UUUUUUUGAGUAA	2	0.99996527576803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4330_c0_g1_293_TPlot.pdf
TRINITY_DN4331_c0_g1:1313	si_a638	TRINITY_DN4331_c0_g1	1303	1322	1313	-24.40	-16.40	0.672131147540984	5	1-12,1322-1311;14-18,1310-1306	13-13,x-x[BULq];19-21,1305-1303[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	AAAAUUGC-CAAAAAAAUCGG&UCGAUUUUUUUGAGUAAUAUA	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN4331_c0_g1_1313_TPlot.pdf
TRINITY_DN4331_c0_g1:2407	si_a505	TRINITY_DN4331_c0_g1	2395	2416	2407	-33.30	-22.10	0.663663663663664	10	4-10,2413-2407;11-19,2405-2397	1-3,2416-2414[UP5];x-x,2406-2406[BULt];20-21,2396-2395[UP3]	..(((((((((.(((((((...&...)))))))-)))))))))..	UUCAUUCCAAGUGAAGAUGCCU&UUUCGUCUUC-CUUGGAAUGUA	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN4331_c0_g1_2407_TPlot.pdf
TRINITY_DN4331_c0_g1:2409	si_a503	TRINITY_DN4331_c0_g1	2397	2418	2409	-32.10	-21.90	0.682242990654206	12	6-12,2413-2407;13-21,2405-2397	1-5,2418-2414[UP5];x-x,2406-2406[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	CAUUCCAAGUGAAGAUGCCUAC&UUUUUCGUCUUC-CUUGGAAUG	2	0.998651692302393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN4331_c0_g1_2409_TPlot.pdf
TRINITY_DN4331_c0_g1:2661	si_a70	TRINITY_DN4331_c0_g1	2647	2670	2661	-23.90	-16.60	0.694560669456067	7	1-8,2670-2663;10-15,2661-2656;16-21,2652-2647	9-9,2662-2662[SIL];x-x,2655-2653[BULt]	((((((...((((((.((((((((&)))))))).))))))---))))))	GAUGAACGUGAACAACUUGAAGGA&UCUUUCAAAUUGUUU---UUCAUU	2	0.999824886012476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4331_c0_g1_2661_TPlot.pdf
TRINITY_DN4332_c0_g1:1688	si_s5	TRINITY_DN4332_c0_g1	1677	1699	1688	-21.70	-15.40	0.709677419354839	11	3-9,1697-1691;10-21,1688-1677	1-2,1699-1698[UP5];x-x,1690-1689[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	GUAGUAGUAGUAGAAGUAGUGAA&UAUAUUACU--UAUUAUUACUAU	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN4332_c0_g1_1688_TPlot.pdf
TRINITY_DN4332_c1_g1:180	si_s388	TRINITY_DN4332_c1_g1	169	191	180	-37.80	-25.10	0.664021164021164	9.5	1-5,191-187;6-9,185-182;11-20,179-170	x-x,186-186[BULt];10-10,181-180[AILt];21-21,169-169[UP3]	.((((((((((..((((.(((((&)))))-))))-.)))))))))).	AUCCUUGGGGUCCUAGGAGCGGA&UCCGC-CUUA-CAUUCCAAGGAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s388_TRINITY_DN4332_c1_g1_180_TPlot.pdf
TRINITY_DN4332_c1_g1:182	si_s387	TRINITY_DN4332_c1_g1	170	192	182	-39.50	-28.00	0.708860759493671	8	1-6,192-187;7-10,185-182;12-21,179-170	x-x,186-186[BULt];11-11,181-180[AILt]	((((((((((..((((.((((((&))))))-))))-.))))))))))	UCCUUGGGGUCCUAGGAGCGGAC&GUCCGC-CUUA-CAUUCCAAGGA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN4332_c1_g1_182_TPlot.pdf
TRINITY_DN4332_c1_g1:183	si_s386	TRINITY_DN4332_c1_g1	171	193	183	-39.20	-26.20	0.668367346938775	9	2-7,192-187;8-11,185-182;13-21,179-171	1-1,193-193[UP5];x-x,186-186[BULt];12-12,181-180[AILt]	(((((((((..((((.((((((.&.))))))-))))-.)))))))))	CCUUGGGGUCCUAGGAGCGGACU&UGUCCGC-CUUA-CAUUCCAAGG	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s386_TRINITY_DN4332_c1_g1_183_TPlot.pdf
TRINITY_DN4333_c0_g1:44	si_s441	TRINITY_DN4333_c0_g1	33	53	44	-23.20	-16.60	0.71551724137931	6.5	1-17,53-37	18-21,36-33[UP3]	....(((((((((((((((((&)))))))))))))))))....	GCGUUUAUGUAUAGUAUGUGA&UUACAUAUUAUAUAUAACAAC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN4333_c0_g1_44_TPlot.pdf
TRINITY_DN4335_c0_g1:2919	si_a410	TRINITY_DN4335_c0_g1	2908	2928	2919	-17.80	-11.60	0.651685393258427	11	2-14,2927-2915	1-1,2928-2928[UP5];15-21,2914-2908[UP3]	.......(((((((((((((.&.))))))))))))).......	GCAACUGGGAUAUGAGCAAAG&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4335_c0_g1_2919_TPlot.pdf
TRINITY_DN4335_c0_g1:3056	si_s423	TRINITY_DN4335_c0_g1	3045	3065	3056	-21.50	-15.00	0.697674418604651	8.5	1-14,3065-3052	15-21,3051-3045[UP3]	.......((((((((((((((&)))))))))))))).......	UCGACUCUGUUAUAUGGAAUG&UAUUCUAUAUAACAAUAAUUA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN4335_c0_g1_3056_TPlot.pdf
TRINITY_DN4335_c0_g1:3057	si_s422	TRINITY_DN4335_c0_g1	3046	3066	3057	-21.30	-15.00	0.704225352112676	9	2-15,3065-3052	1-1,3066-3066[UP5];16-21,3051-3046[UP3]	......((((((((((((((.&.))))))))))))))......	CGACUCUGUUAUAUGGAAUGG&AUAUUCUAUAUAACAAUAAUU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN4335_c0_g1_3057_TPlot.pdf
TRINITY_DN4335_c0_g1:3058	si_s421	TRINITY_DN4335_c0_g1	3047	3067	3058	-23.00	-15.00	0.652173913043478	10	3-16,3065-3052	1-2,3067-3066[UP5];17-21,3051-3047[UP3]	.....((((((((((((((..&..)))))))))))))).....	GACUCUGUUAUAUGGAAUGGA&CAUAUUCUAUAUAACAAUAAU	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN4335_c0_g1_3058_TPlot.pdf
TRINITY_DN4335_c0_g1:3068	si_s385	TRINITY_DN4335_c0_g1	3057	3078	3068	-38.60	-26.70	0.691709844559585	10	1-7,3078-3072;8-10,3070-3068;13-19,3065-3059	x-x,3071-3071[BULt];11-12,3067-3066[SIL];20-21,3058-3057[UP3]	..(((((((..(((.(((((((&)))))))-)))..)))))))..	UAUGGAAUGGAAGGAUGGACGC&GUGUCCG-CCUUACAUUCCAAG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s385_TRINITY_DN4335_c0_g1_3068_TPlot.pdf
TRINITY_DN4335_c0_g1:3311	si_a787	TRINITY_DN4335_c0_g1	3299	3319	3311	-26.30	-17.80	0.67680608365019	6	1-5,3319-3315;7-18,3314-3303;19-20,3301-3300	6-6,x-x[BULq];x-x,3302-3302[BULt];21-21,3299-3299[UP3]	.((.((((((((((((-(((((&))))).))))))))))))-)).	GGGCAAAAUAGAAGGA-AGAAG&CUUCUAUUUUUCUAUUUU-CCA	2	0.999999815921115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4335_c0_g1_3311_TPlot.pdf
TRINITY_DN4335_c0_g1:3312	si_a786	TRINITY_DN4335_c0_g1	3300	3320	3312	-26.60	-19.00	0.714285714285714	5	1-6,3320-3315;8-19,3314-3303;20-21,3301-3300	7-7,x-x[BULq];x-x,3302-3302[BULt]	((.((((((((((((-((((((&)))))).))))))))))))-))	GGCAAAAUAGAAGGA-AGAAGA&UCUUCUAUUUUUCUAUUUU-CC	3	0.99998247581855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4335_c0_g1_3312_TPlot.pdf
TRINITY_DN4335_c0_g1:3314	si_a784	TRINITY_DN4335_c0_g1	3303	3322	3314	-24.70	-19.60	0.793522267206478	5	2-8,3321-3315;10-21,3314-3303	1-1,3322-3322[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	AAAAUAGAAGGA-AGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4335_c0_g1_3314_TPlot.pdf
TRINITY_DN4335_c0_g1:3315	si_a783	TRINITY_DN4335_c0_g1	3304	3323	3315	-24.70	-18.80	0.761133603238866	6.5	3-9,3321-3315;11-21,3314-3304	1-2,3323-3322[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	AAAUAGAAGGA-AGAAGAGGC&AACUCUUCUAUUUUUCUAUUU	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4335_c0_g1_3315_TPlot.pdf
TRINITY_DN4335_c1_g1:2611	si_a183	TRINITY_DN4335_c1_g1	2600	2620	2611	-30.10	-20.60	0.684385382059801	14.5	8-20,2613-2601	1-7,2620-2614[UP5];21-21,2600-2600[UP3]	.(((((((((((((.......&.......))))))))))))).	UGCAGGGAAAGAUAGAUGGCA&UAGAUAAUAUCUUUCCCUGUU	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN4335_c1_g1_2611_TPlot.pdf
TRINITY_DN4336_c0_g1:4682	si_a412	TRINITY_DN4336_c0_g1	4667	4691	4682	-18.30	-14.00	0.765027322404372	10	1-10,4691-4682;11-21,4677-4667	x-x,4681-4678[BULt]	(((((((((((....((((((((((&))))))))))----)))))))))))	UAUUUAUUUAAGCCUAUGUGAACAA&UUGUUUAUAU----UUAAAUAAAUA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN4336_c0_g1_4682_TPlot.pdf
TRINITY_DN4336_c0_g1:5900	si_a126	TRINITY_DN4336_c0_g1	5889	5909	5900	-24.70	-16.60	0.672064777327935	6.5	1-3,5909-5907;5-16,5905-5894;18-21,5892-5889	4-4,5906-5906[SIL];17-17,5893-5893[SIL]	((((.((((((((((((.(((&))).)))))))))))).))))	UGAUGGCUGUUGUUAUGCAAC&GUUUUAUAGCAAUAGUAAUUA	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN4336_c0_g1_5900_TPlot.pdf
TRINITY_DN4336_c0_g1:5901	si_a125	TRINITY_DN4336_c0_g1	5890	5910	5901	-25.00	-16.40	0.656	9	1-4,5910-5907;6-17,5905-5894	5-5,5906-5906[SIL];18-21,5893-5890[UP3]	....((((((((((((.((((&)))).))))))))))))....	GAUGGCUGUUGUUAUGCAACA&UGUUUUAUAGCAAUAGUAAUU	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN4336_c0_g1_5901_TPlot.pdf
TRINITY_DN4337_c0_g1:1074	si_s76	TRINITY_DN4337_c0_g1	1061	1083	1074	-23.60	-15.60	0.661016949152542	11.5	5-18,1079-1066;19-21,1063-1061	1-4,1083-1080[UP5];x-x,1065-1064[BULt]	(((..((((((((((((((....&....))))))))))))))--)))	GAGUCAAAGGAGAGGAAAAUCUU&AUUUUUUUUCUUUCCUUU--CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4337_c0_g1_1074_TPlot.pdf
TRINITY_DN4337_c0_g1:2662	si_s895	TRINITY_DN4337_c0_g1	2651	2672	2662	-31.10	-22.30	0.717041800643087	8.5	4-6,2669-2667;7-17,2665-2655;19-21,2653-2651	1-3,2672-2670[UP5];x-x,2666-2666[BULt];18-18,2654-2654[SIL]	(((.(((((((((((.(((...&...)))-))))))))))).)))	GAGUUUGAAGAGAAAUGCCAAC&AUAGGC-UUUCUCUUCAAUUUC	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4337_c0_g1_2662_TPlot.pdf
TRINITY_DN4337_c0_g1:2665	si_s892	TRINITY_DN4337_c0_g1	2654	2675	2665	-29.50	-19.80	0.671186440677966	14	7-9,2669-2667;10-20,2665-2655	1-6,2675-2670[UP5];x-x,2666-2666[BULt];21-21,2654-2654[UP3]	.(((((((((((.(((......&......)))-))))))))))).	UUUGAAGAGAAAUGCCAACCUG&UAAAUAGGC-UUUCUCUUCAAU	2	0.998313119563257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4337_c0_g1_2665_TPlot.pdf
TRINITY_DN43386_c0_g1:283	si_a122	TRINITY_DN43386_c0_g1	272	292	283	-29.00	-19.00	0.655172413793103	5.5	2-14,291-279;17-21,276-272	1-1,292-292[UP5];15-16,278-277[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UAUUAACGCUAUGAGACAAGA&GCUUGUUUUAUAGCAAUAGUA	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN43386_c0_g1_283_TPlot.pdf
TRINITY_DN43386_c0_g1:285	si_a120	TRINITY_DN43386_c0_g1	274	296	285	-30.50	-21.40	0.701639344262295	11	1-5,296-292;6-16,289-279	x-x,291-290[BULt];17-21,278-274[UP3]	.....(((((((((((..(((((&)))))--))))))))))).....	UUAACGCUAUGAGACAAGAGCUC&GAGCU--UGUUUUAUAGCAAUAG	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN43386_c0_g1_285_TPlot.pdf
TRINITY_DN43386_c0_g1:288	si_a117	TRINITY_DN43386_c0_g1	277	299	288	-31.00	-23.50	0.758064516129032	10.5	3-8,297-292;9-19,289-279	1-2,299-298[UP5];x-x,291-290[BULt];20-21,278-277[UP3]	..(((((((((((..((((((..&..))))))--)))))))))))..	ACGCUAUGAGACAAGAGCUCGAA&UACGAGCU--UGUUUUAUAGCAA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN43386_c0_g1_288_TPlot.pdf
TRINITY_DN43386_c0_g1:289	si_a116	TRINITY_DN43386_c0_g1	278	300	289	-31.10	-23.50	0.755627009646302	11	4-9,297-292;10-20,289-279	1-3,300-298[UP5];x-x,291-290[BULt];21-21,278-278[UP3]	.(((((((((((..((((((...&...))))))--))))))))))).	CGCUAUGAGACAAGAGCUCGAAG&AUACGAGCU--UGUUUUAUAGCA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN43386_c0_g1_289_TPlot.pdf
TRINITY_DN43386_c0_g1:293	si_a114	TRINITY_DN43386_c0_g1	280	302	293	-27.90	-19.70	0.706093189964158	14	6-11,297-292;12-21,289-280	1-5,302-298[UP5];x-x,291-290[BULt]	((((((((((..((((((.....&.....))))))--))))))))))	CUAUGAGACAAGAGCUCGAAGGA&AAAUACGAGCU--UGUUUUAUAG	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN43386_c0_g1_293_TPlot.pdf
TRINITY_DN4338_c0_g1:2357	si_s485	TRINITY_DN4338_c0_g1	2346	2366	2357	-18.10	-12.70	0.701657458563536	8	1-8,2366-2359;10-18,2357-2349	9-9,2358-2358[SIL];19-21,2348-2346[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UGAGUGUUUGAAAAAAUGUAG&CUAUAUUUAUUUAAAUAUAAA	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN4338_c0_g1_2357_TPlot.pdf
TRINITY_DN4338_c0_g1:2427	si_s600	TRINITY_DN4338_c0_g1	2416	2438	2427	-28.20	-18.40	0.652482269503546	10	2-9,2437-2430;10-11,2427-2426;13-20,2424-2417	1-1,2438-2438[UP5];x-x,2429-2428[BULt];12-12,2425-2425[SIL];21-21,2416-2416[UP3]	.((((((((.((..((((((((.&.))))))))--)).)))))))).	GGGAGGAGAGUCGGGCUUGGAUC&AAUCCAAGC--GAAUCUUUUUUA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN4338_c0_g1_2427_TPlot.pdf
TRINITY_DN4338_c0_g1:2826	si_s71	TRINITY_DN4338_c0_g1	2814	2835	2826	-25.70	-18.80	0.731517509727627	9	1-8,2835-2828;10-16,2826-2820;17-20,2818-2815	9-9,2827-2827[SIL];x-x,2819-2819[BULt];21-21,2814-2814[UP3]	.((((.(((((((.((((((((&)))))))).)))))))-)))).	UGGAGCAGAGAGGUGAUGGAAG&CUUCUAUUUUUUUUCU-UUCCU	4	0.999999998067349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4338_c0_g1_2826_TPlot.pdf
TRINITY_DN4338_c0_g1:2941	si_s443	TRINITY_DN4338_c0_g1	2930	2950	2941	-23.50	-15.70	0.668085106382979	6	1-14,2950-2937;17-20,2934-2931	15-16,2936-2935[SIL];21-21,2930-2930[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AUGUUUGUAUAUGUGGUAUGU&ACAUAUUAUAUAUAACAACAA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN4338_c0_g1_2941_TPlot.pdf
TRINITY_DN4338_c0_g1:2942	si_s442	TRINITY_DN4338_c0_g1	2931	2951	2942	-23.80	-16.60	0.697478991596639	5	1-15,2951-2937;18-21,2934-2931	16-17,2936-2935[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UGUUUGUAUAUGUGGUAUGUA&UACAUAUUAUAUAUAACAACA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN4338_c0_g1_2942_TPlot.pdf
TRINITY_DN4338_c0_g1:2944	si_s440	TRINITY_DN4338_c0_g1	2934	2953	2944	-21.60	-15.90	0.736111111111111	7	3-17,2951-2937;19-21,2936-2934	1-2,2953-2952[UP5];18-18,x-x[BULq]	(((-(((((((((((((((..&..))))))))))))))).)))	UUG-UAUAUGUGGUAUGUAUA&AUUACAUAUUAUAUAUAACAA	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN4338_c0_g1_2944_TPlot.pdf
TRINITY_DN4338_c0_g1:2945	si_s439	TRINITY_DN4338_c0_g1	2935	2954	2945	-21.50	-15.00	0.697674418604651	8.5	4-18,2951-2937;20-21,2936-2935	1-3,2954-2952[UP5];19-19,x-x[BULq]	((-(((((((((((((((...&...))))))))))))))).))	UG-UAUAUGUGGUAUGUAUAU&AAUUACAUAUUAUAUAUAACA	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN4338_c0_g1_2945_TPlot.pdf
TRINITY_DN4338_c0_g1:2946	si_s438	TRINITY_DN4338_c0_g1	2935	2955	2946	-21.20	-14.60	0.688679245283019	11.5	5-19,2951-2937	1-4,2955-2952[UP5];20-21,2936-2935[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGUAUAUGUGGUAUGUAUAUA&UAAUUACAUAUUAUAUAUAAC	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN4338_c0_g1_2946_TPlot.pdf
TRINITY_DN4338_c0_g1:2948	si_s436	TRINITY_DN4338_c0_g1	2937	2957	2948	-19.60	-14.40	0.73469387755102	12.5	7-21,2951-2937	1-6,2957-2952[UP5]	(((((((((((((((......&......)))))))))))))))	UAUAUGUGGUAUGUAUAUACG&AAUAAUUACAUAUUAUAUAUA	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN4338_c0_g1_2948_TPlot.pdf
TRINITY_DN4339_c1_g1:236	si_a891	TRINITY_DN4339_c1_g1	225	245	236	-22.90	-15.20	0.663755458515284	9	1-14,245-232	15-21,231-225[UP3]	.......((((((((((((((&)))))))))))))).......	CAGUAACUUGUUGCUAUAUUG&CAAUAUAGUAAUAAUAAGUAA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN4339_c1_g1_236_TPlot.pdf
TRINITY_DN4342_c0_g2:201	si_a791	TRINITY_DN4342_c0_g2	192	210	201	-26.50	-18.60	0.70188679245283	6	1-15,210-196;18-21,195-192	16-17,x-x[BULq]	((((--(((((((((((((((&)))))))))))))))..))))	GGAU--GAAGAUGGAGAAGUA&UAUUUUUCUAUUUUCCAAUCC	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN4342_c0_g2_201_TPlot.pdf
TRINITY_DN4343_c0_g1:2149	si_s812	TRINITY_DN4343_c0_g1	2138	2158	2149	-26.40	-19.50	0.738636363636364	10	1-13,2158-2146	14-21,2145-2138[UP3]	........(((((((((((((&)))))))))))))........	UACCCGAUGAAGAGGUGACGA&UCGUUACCUUUUCUUAAUAAU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN4343_c0_g1_2149_TPlot.pdf
TRINITY_DN4344_c0_g2:1073	si_a21	TRINITY_DN4344_c0_g2	1062	1082	1073	-24.30	-15.96	0.65679012345679	11	1-5,1082-1078;10-20,1073-1063	6-9,1077-1074[SIL];21-21,1062-1062[UP3]	.(((((((((((....(((((&)))))....))))))))))).	CUGGAACUGAAACAACAUGGG&CCUAUUUAUUUUUAGUUCUAA	3	0.999999952528498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN4344_c0_g2_1073_TPlot.pdf
TRINITY_DN43457_c0_g1:251	si_a18	TRINITY_DN43457_c0_g1	240	260	251	-26.30	-19.60	0.745247148288973	7.5	3-6,258-255;8-21,253-240	1-2,260-259[UP5];7-7,254-254[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAAUUAAGGAUAGAAAGGCAG&AAGCCUAUUUAUUUUUAGUUC	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN43457_c0_g1_251_TPlot.pdf
TRINITY_DN43457_c0_g1:252	si_a17	TRINITY_DN43457_c0_g1	241	261	252	-24.30	-16.30	0.670781893004115	9.5	4-7,258-255;9-21,253-241	1-3,261-259[UP5];8-8,254-254[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AAUUAAGGAUAGAAAGGCAGA&AAAGCCUAUUUAUUUUUAGUU	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN43457_c0_g1_252_TPlot.pdf
TRINITY_DN43457_c0_g1:257	si_a784	TRINITY_DN43457_c0_g1	246	266	257	-24.70	-16.60	0.672064777327935	8	3-8,264-259;10-21,257-246	1-2,266-265[UP5];9-9,258-258[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AGGAUAGAAAGGCAGAAGAUA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN43457_c0_g1_257_TPlot.pdf
TRINITY_DN4345_c0_g2:265	si_s316	TRINITY_DN4345_c0_g2	254	275	265	-31.50	-21.30	0.676190476190476	11	1-8,275-268;13-21,262-254	9-12,267-263[AILt]	(((((((((.....((((((((&))))))))-....)))))))))	UUUGUGGCAUUUAUGGACAGAA&UUCUGUCC-UUCUUGUUACAAA	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN4345_c0_g2_265_TPlot.pdf
TRINITY_DN4347_c0_g1:1007	si_a500	TRINITY_DN4347_c0_g1	996	1017	1007	-34.40	-24.72	0.718604651162791	12	1-7,1017-1011;11-21,1006-996	8-10,1010-1007[AILt]	(((((((((((....(((((((&)))))))-...)))))))))))	UCCGAGGAGGAAGCUGAGGCGA&UCGUUUU-UCGUCUUCCUUGGA	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN4347_c0_g1_1007_TPlot.pdf
TRINITY_DN4347_c0_g1:1008	si_s85	TRINITY_DN4347_c0_g1	997	1018	1008	-33.80	-22.70	0.671597633136095	10	1-3,1018-1016;5-8,1014-1011;10-20,1008-998	4-4,1015-1015[SIL];9-9,1010-1009[AILt];21-21,997-997[UP3]	.(((((((((((..((((.(((&))).))))-.))))))))))).	CCGAGGAGGAAGCUGAGGCGAG&CUUUCCUU-UCUUCUUCUUCGC	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4347_c0_g1_1008_TPlot.pdf
TRINITY_DN4347_c0_g1:1011	si_s84	TRINITY_DN4347_c0_g1	998	1021	1011	-32.30	-23.10	0.715170278637771	11	1-6,1021-1016;7-10,1014-1011;11-21,1008-998	x-x,1015-1015[BULt];x-x,1010-1009[BULt]	(((((((((((..((((.((((((&))))))-))))--)))))))))))	CGAGGAGGAAGCUGAGGCGAGGGA&UCUUUC-CUUU--CUUCUUCUUCG	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4347_c0_g1_1011_TPlot.pdf
TRINITY_DN4347_c0_g1:1013	si_s81	TRINITY_DN4347_c0_g1	1001	1022	1013	-28.90	-19.70	0.681660899653979	10	1-7,1022-1016;9-12,1014-1011;14-21,1008-1001	8-8,1015-1015[SIL];13-13,1010-1009[AILt]	((((((((..((((.(((((((&))))))).))))-.))))))))	GGAGGAAGCUGAGGCGAGGGAA&UUUUCUUUCCUU-UCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4347_c0_g1_1013_TPlot.pdf
TRINITY_DN4347_c0_g1:1014	si_s80	TRINITY_DN4347_c0_g1	1002	1023	1014	-28.20	-19.50	0.691489361702128	8	1-8,1023-1016;10-13,1014-1011;15-21,1008-1002	9-9,1015-1015[SIL];14-14,1010-1009[AILt]	(((((((..((((.((((((((&)))))))).))))-.)))))))	GAGGAAGCUGAGGCGAGGGAAA&UUUUUCUUUCCUU-UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4347_c0_g1_1014_TPlot.pdf
TRINITY_DN4347_c0_g1:1015	si_s79	TRINITY_DN4347_c0_g1	1003	1024	1015	-26.20	-17.20	0.656488549618321	8	1-9,1024-1016;11-14,1014-1011;16-21,1008-1003	10-10,1015-1015[SIL];15-15,1010-1009[AILt]	((((((..((((.(((((((((&))))))))).))))-.))))))	AGGAAGCUGAGGCGAGGGAAAA&UUUUUUCUUUCCUU-UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4347_c0_g1_1015_TPlot.pdf
TRINITY_DN4347_c0_g1:1018	si_s92	TRINITY_DN4347_c0_g1	1007	1027	1018	-34.90	-23.70	0.679083094555874	8	1-5,1027-1023;7-19,1021-1009	6-6,1022-1022[SIL];20-21,1008-1007[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AGCUGAGGCGAGGGAAAAGGA&UUCUUCUUCUUCGCUUCGGAU	3	0.999999999188513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4347_c0_g1_1018_TPlot.pdf
TRINITY_DN4347_c0_g1:1020	si_s90	TRINITY_DN4347_c0_g1	1009	1029	1020	-35.30	-24.30	0.688385269121813	7	2-7,1028-1023;9-21,1021-1009	1-1,1029-1029[UP5];8-8,1022-1022[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	CUGAGGCGAGGGAAAAGGAAC&CUUUCUUCUUCUUCGCUUCGG	3	0.999999992920476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4347_c0_g1_1020_TPlot.pdf
TRINITY_DN4347_c0_g1:1043	si_a560	TRINITY_DN4347_c0_g1	1032	1052	1043	-36.60	-24.60	0.672131147540984	6.5	1-12,1052-1041;14-16,1040-1038;18-21,1035-1032	13-13,x-x[BULq];17-17,1037-1036[AILt]	((((..(((-((((((((((((&)))))))))))).)))-.))))	GCGGAGUCG-GGGGAGGUGAAG&CUUUAUCUCCCCGUGA-AUCGU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN4347_c0_g1_1043_TPlot.pdf
TRINITY_DN4347_c0_g1:1046	si_a557	TRINITY_DN4347_c0_g1	1036	1055	1046	-33.40	-23.60	0.706586826347305	8.5	3-15,1053-1041;17-19,1040-1038	1-2,1055-1054[UP5];16-16,x-x[BULq];20-21,1037-1036[UP3]	..(((-(((((((((((((..&..))))))))))))).)))..	AGUCG-GGGGAGGUGAAGAUC&UUUCUUUAUCUCCCCGUGAAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN4347_c0_g1_1046_TPlot.pdf
TRINITY_DN4347_c0_g1:1048	si_a555	TRINITY_DN4347_c0_g1	1038	1057	1048	-33.70	-23.40	0.694362017804154	10.5	5-17,1053-1041;19-21,1040-1038	1-4,1057-1054[UP5];18-18,x-x[BULq]	(((-(((((((((((((....&....))))))))))))).)))	UCG-GGGGAGGUGAAGAUCCG&UAUUUCUUUAUCUCCCCGUGA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN4347_c0_g1_1048_TPlot.pdf
TRINITY_DN4347_c0_g1:1049	si_a554	TRINITY_DN4347_c0_g1	1038	1059	1049	-34.40	-23.02	0.669186046511628	14	1-2,1059-1058;6-18,1053-1041	3-5,1057-1054[AILt];19-21,1040-1038[UP3]	...(((((((((((((....((&))-...)))))))))))))...	UCGGGGGAGGUGAAGAUCCGGG&CU-AUUUCUUUAUCUCCCCGUG	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN4347_c0_g1_1049_TPlot.pdf
TRINITY_DN4347_c0_g1:1051	si_a552	TRINITY_DN4347_c0_g1	1040	1061	1051	-33.10	-25.42	0.76797583081571	11.5	1-4,1061-1058;8-20,1053-1041	5-7,1057-1054[AILt];21-21,1040-1040[UP3]	.(((((((((((((....((((&))))-...))))))))))))).	GGGGGAGGUGAAGAUCCGGGAU&AUCU-AUUUCUUUAUCUCCCCG	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN4347_c0_g1_1051_TPlot.pdf
TRINITY_DN4347_c0_g1:1052	si_a551	TRINITY_DN4347_c0_g1	1041	1062	1052	-31.60	-26.02	0.823417721518987	10	1-5,1062-1058;9-21,1053-1041	6-8,1057-1054[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	GGGGAGGUGAAGAUCCGGGAUU&AAUCU-AUUUCUUUAUCUCCCC	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN4347_c0_g1_1052_TPlot.pdf
TRINITY_DN4347_c0_g1:1053	si_a550	TRINITY_DN4347_c0_g1	1042	1063	1053	-30.90	-25.02	0.809708737864078	10	1-6,1063-1058;10-21,1053-1042	7-9,1057-1054[AILt]	((((((((((((....((((((&))))))-...))))))))))))	GGGAGGUGAAGAUCCGGGAUUG&CAAUCU-AUUUCUUUAUCUCCC	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN4347_c0_g1_1053_TPlot.pdf
TRINITY_DN4347_c0_g1:1054	si_a549	TRINITY_DN4347_c0_g1	1043	1064	1054	-29.50	-21.72	0.736271186440678	11	2-7,1063-1058;11-21,1053-1043	1-1,1064-1064[UP5];8-10,1057-1054[AILt]	(((((((((((....((((((.&.))))))-...)))))))))))	GGAGGUGAAGAUCCGGGAUUGC&UCAAUCU-AUUUCUUUAUCUCC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN4347_c0_g1_1054_TPlot.pdf
TRINITY_DN4347_c0_g1:1055	si_a548	TRINITY_DN4347_c0_g1	1044	1065	1055	-27.20	-18.42	0.677205882352941	13	3-8,1063-1058;12-21,1053-1044	1-2,1065-1064[UP5];9-11,1057-1054[AILt]	((((((((((....((((((..&..))))))-...))))))))))	GAGGUGAAGAUCCGGGAUUGCA&UUCAAUCU-AUUUCUUUAUCUC	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN4347_c0_g1_1055_TPlot.pdf
TRINITY_DN4347_c0_g1:1183	si_s67	TRINITY_DN4347_c0_g1	1172	1193	1183	-25.60	-18.10	0.70703125	7.5	1-3,1193-1191;4-16,1189-1177;18-20,1175-1173	x-x,1190-1190[BULt];17-17,1176-1176[SIL];21-21,1172-1172[UP3]	.(((.(((((((((((((.(((&)))-))))))))))))).))).	UGGGCAAGAGAUGGAAGUCUGC&GCA-ACUUCUAUUUUUUUUCUU	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4347_c0_g1_1183_TPlot.pdf
TRINITY_DN4347_c0_g1:73	si_a66	TRINITY_DN4347_c0_g1	61	82	73	-26.70	-18.42	0.689887640449438	12.5	1-10,82-73;14-19,68-63	11-13,72-69[AILt];20-21,62-61[UP3]	..((((((....((((((((((&))))))))))-...))))))..	AUGAGCAGCCAGGGGAGAAGCG&CGCUUCUUUC-AAAUUGUUUUU	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4347_c0_g1_73_TPlot.pdf
TRINITY_DN4347_c0_g1:75	si_a64	TRINITY_DN4347_c0_g1	63	84	75	-29.40	-21.12	0.718367346938776	9.5	1-12,84-73;16-21,68-63	13-15,72-69[AILt]	((((((....((((((((((((&))))))))))))-...))))))	GAGCAGCCAGGGGAGAAGCGGG&CUCGCUUCUUUC-AAAUUGUUU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN4347_c0_g1_75_TPlot.pdf
TRINITY_DN4347_c0_g1:917	si_s95	TRINITY_DN4347_c0_g1	905	925	917	-36.30	-23.70	0.652892561983471	5.5	1-4,925-922;6-10,921-917;11-20,915-906	5-5,x-x[BULq];x-x,916-916[BULt];21-21,905-905[UP3]	.((((((((((.(((((-((((&)))).)))))-)))))))))).	GCAAUUCGAAGCCGAAG-AGAA&UUCUUCUUCG-CUUCGGAUUGG	4	0.99999944725364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN4347_c0_g1_917_TPlot.pdf
TRINITY_DN4347_c0_g1:924	si_s73	TRINITY_DN4347_c0_g1	912	933	924	-24.00	-17.30	0.720833333333333	6	1-16,933-918;18-21,915-912	17-17,917-916[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	GAAGCCGAAGAGAAAAAGUGGA&UCUAUUUUUUUUCUUU-CCUUU	3	0.999999999999935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4347_c0_g1_924_TPlot.pdf
TRINITY_DN4347_c0_g1:925	si_s72	TRINITY_DN4347_c0_g1	913	934	925	-24.10	-17.00	0.705394190871369	5.5	1-17,934-918;19-21,915-913	18-18,917-916[AILt]	(((..(((((((((((((((((&)))))))))))))))))-.)))	AAGCCGAAGAGAAAAAGUGGAA&UUCUAUUUUUUUUCUUU-CCUU	2	0.999999999987941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4347_c0_g1_925_TPlot.pdf
TRINITY_DN4347_c0_g1:927	si_s70	TRINITY_DN4347_c0_g1	916	936	927	-25.80	-17.10	0.662790697674419	8	3-19,934-918	1-2,936-935[UP5];20-21,917-916[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CCGAAGAGAAAAAGUGGAAAG&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4347_c0_g1_927_TPlot.pdf
TRINITY_DN4347_c0_g1:928	si_s69	TRINITY_DN4347_c0_g1	917	937	928	-23.40	-17.10	0.730769230769231	9	4-20,934-918	1-3,937-935[UP5];21-21,917-917[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGAAGAGAAAAAGUGGAAAGA&AACUUCUAUUUUUUUUCUUUC	3	0.999999999935389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4347_c0_g1_928_TPlot.pdf
TRINITY_DN4347_c0_g1:929	si_s68	TRINITY_DN4347_c0_g1	918	938	929	-23.10	-17.10	0.74025974025974	10	5-21,934-918	1-4,938-935[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAGAGAAAAAGUGGAAAGAG&CAACUUCUAUUUUUUUUCUUU	2	0.998867299997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4347_c0_g1_929_TPlot.pdf
TRINITY_DN4348_c0_g1:594	si_a156	TRINITY_DN4348_c0_g1	583	603	594	-28.90	-19.20	0.664359861591695	9	1-15,603-589	16-21,588-583[UP3]	......(((((((((((((((&)))))))))))))))......	UAACAUGAUUGACUUUGAGAC&GUUUUAAGGUCAAUCUAUUCA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a156_TRINITY_DN4348_c0_g1_594_TPlot.pdf
TRINITY_DN4348_c0_g1:635	si_a478	TRINITY_DN4348_c0_g1	624	644	635	-21.30	-14.50	0.68075117370892	9	2-16,643-629	1-1,644-644[UP5];17-21,628-624[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CAUUACUAUAUGAUAAUGAUA&AAUUAUUGUUAUAUAGAAUAU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN4348_c0_g1_635_TPlot.pdf
TRINITY_DN4348_c0_g1:636	si_a477	TRINITY_DN4348_c0_g1	625	645	636	-21.50	-14.50	0.674418604651163	10	3-17,643-629	1-2,645-644[UP5];18-21,628-625[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUUACUAUAUGAUAAUGAUAA&UAAUUAUUGUUAUAUAGAAUA	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN4348_c0_g1_636_TPlot.pdf
TRINITY_DN434_c0_g2:1890	si_s830	TRINITY_DN434_c0_g2	1879	1899	1890	-23.90	-15.60	0.652719665271967	5.5	1-10,1899-1890;12-18,1888-1882	11-11,1889-1889[SIL];19-21,1881-1879[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AAGUUCAAGUCGUUUUUCAUU&AAUGAAAAACAAUUUGAAAGA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN434_c0_g2_1890_TPlot.pdf
TRINITY_DN434_c1_g1:345	si_a824	TRINITY_DN434_c1_g1	334	355	345	-23.60	-15.50	0.656779661016949	5.5	1-6,355-350;7-10,348-345;12-21,343-334	x-x,349-349[BULt];11-11,344-344[SIL]	((((((((((.((((.((((((&))))))-)))).))))))))))	GUUUUUUUUUGUUCCGUUUCUU&AAGAAA-GGAAAGAAAAAAAAU	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN434_c1_g1_345_TPlot.pdf
TRINITY_DN434_c1_g2:1338	si_s70	TRINITY_DN434_c1_g2	1327	1349	1338	-25.80	-17.20	0.666666666666667	10.5	2-6,1348-1344;7-8,1342-1341;9-21,1339-1327	1-1,1349-1349[UP5];x-x,1343-1343[BULt];x-x,1340-1340[BULt]	(((((((((((((.((.(((((.&.)))))-))-)))))))))))))	GGGAGGAAGAGAACGUCGGGAGA&ACUUCU-AU-UUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN434_c1_g2_1338_TPlot.pdf
TRINITY_DN434_c1_g3:2478	si_s81	TRINITY_DN434_c1_g3	2467	2486	2478	-28.90	-20.50	0.709342560553633	7	1-7,2486-2480;9-11,2479-2477;13-20,2475-2468	8-8,x-x[BULq];12-12,2476-2476[SIL];21-21,2467-2467[UP3]	.((((((((.(((-(((((((&))))))).))).)))))))).	UGAGGAGGAUAGG-AAGAGAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN434_c1_g3_2478_TPlot.pdf
TRINITY_DN434_c1_g3:2589	si_a784	TRINITY_DN434_c1_g3	2578	2598	2589	-24.70	-16.30	0.659919028340081	11.5	3-16,2596-2583	1-2,2598-2597[UP5];17-21,2582-2578[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUGAGGGAAAGAUAGAGGGAA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN434_c1_g3_2589_TPlot.pdf
TRINITY_DN434_c2_g1:1158	si_a463	TRINITY_DN434_c2_g1	1147	1168	1158	-19.70	-13.60	0.690355329949239	6.5	1-8,1168-1161;9-18,1159-1150	x-x,1160-1160[BULt];19-21,1149-1147[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	CGUAUUGCAUAUUAAUGUAUAA&UUAUAUAU-AAUAUGUAAUUAU	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN434_c2_g1_1158_TPlot.pdf
TRINITY_DN4350_c0_g1:177	si_s809	TRINITY_DN4350_c0_g1	166	185	177	-28.50	-18.60	0.652631578947368	10	1-6,185-180;9-17,178-170	7-8,179-179[AILq];18-21,169-166[UP3]	....(((((((((.-((((((&))))))..)))))))))....	UGAUGGAGAAGGUU-CGAGGA&UCUUCGUUACCUUUUCUUAAU	2	0.999999845357143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4350_c0_g1_177_TPlot.pdf
TRINITY_DN4350_c0_g1:178	si_s808	TRINITY_DN4350_c0_g1	167	186	178	-28.60	-19.60	0.685314685314685	9	1-7,186-180;10-18,178-170	8-9,179-179[AILq];19-21,169-167[UP3]	...(((((((((.-(((((((&)))))))..)))))))))...	GAUGGAGAAGGUU-CGAGGAU&AUCUUCGUUACCUUUUCUUAA	2	0.999868477795088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN4350_c0_g1_178_TPlot.pdf
TRINITY_DN4350_c0_g1:179	si_s807	TRINITY_DN4350_c0_g1	168	187	179	-28.90	-19.60	0.678200692041523	9	2-8,186-180;11-19,178-170	1-1,187-187[UP5];9-10,179-179[AILq];20-21,169-168[UP3]	..(((((((((.-(((((((.&.)))))))..)))))))))..	AUGGAGAAGGUU-CGAGGAUC&UAUCUUCGUUACCUUUUCUUA	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4350_c0_g1_179_TPlot.pdf
TRINITY_DN4350_c0_g1:181	si_s804	TRINITY_DN4350_c0_g1	171	190	181	-27.90	-18.50	0.663082437275986	11.5	5-11,186-180;14-21,178-171	1-4,190-187[UP5];12-13,179-179[AILq]	((((((((.-(((((((....&....)))))))..))))))))	GAGAAGGUU-CGAGGAUCGUC&UUUUAUCUUCGUUACCUUUUC	3	0.999999999988671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4350_c0_g1_181_TPlot.pdf
TRINITY_DN4350_c0_g1:819	si_a650	TRINITY_DN4350_c0_g1	807	828	819	-33.30	-21.90	0.657657657657658	8.5	1-11,828-818;12-15,814-811;18-21,810-807	x-x,817-815[BULt];16-17,x-x[BULq]	((((--((((...(((((((((((&)))))))))))---))))..))))	GGCG--UCCCUGAGAUAUAUUACU&AGUAAUAUAUC---GGGAAAUGCC	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a650_TRINITY_DN4350_c0_g1_819_TPlot.pdf
TRINITY_DN4351_c0_g1:1025	si_a752	TRINITY_DN4351_c0_g1	1014	1033	1025	-34.80	-24.40	0.701149425287356	8	1-4,1033-1030;7-17,1028-1018	5-6,1029-1029[AILq];18-21,1017-1014[UP3]	....(((((((((((.-((((&))))..)))))))))))....	AACUCCCAAAGGAGGA-CAUG&CAUGAACCUCCUUUGGGUUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN4351_c0_g1_1025_TPlot.pdf
TRINITY_DN4352_c0_g1:1135	si_s76	TRINITY_DN4352_c0_g1	1124	1145	1135	-23.60	-15.90	0.673728813559322	5	1-9,1145-1137;10-18,1135-1127	x-x,1136-1136[BULt];19-21,1126-1124[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AAAAAAGGAAAGCAAAAAAAAU&AUUUUUUUU-CUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4352_c0_g1_1135_TPlot.pdf
TRINITY_DN4352_c0_g1:1137	si_s75	TRINITY_DN4352_c0_g1	1125	1146	1137	-24.00	-17.20	0.716666666666667	4	1-10,1146-1137;11-19,1135-1127	x-x,1136-1136[BULt];20-21,1126-1125[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AAAAAGGAAAGCAAAAAAAAUA&UAUUUUUUUU-CUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4352_c0_g1_1137_TPlot.pdf
TRINITY_DN4352_c0_g1:1138	si_s74	TRINITY_DN4352_c0_g1	1126	1147	1138	-25.00	-17.40	0.696	4	2-11,1146-1137;12-20,1135-1127	1-1,1147-1147[UP5];x-x,1136-1136[BULt];21-21,1126-1126[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AAAAGGAAAGCAAAAAAAAUAA&CUAUUUUUUUU-CUUUCCUUUC	2	0.999999999914898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4352_c0_g1_1138_TPlot.pdf
TRINITY_DN4352_c0_g1:1139	si_s73	TRINITY_DN4352_c0_g1	1127	1148	1139	-24.00	-17.40	0.725	5	3-12,1146-1137;13-21,1135-1127	1-2,1148-1147[UP5];x-x,1136-1136[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	AAAGGAAAGCAAAAAAAAUAAU&UCUAUUUUUUUU-CUUUCCUUU	2	0.999999991276174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4352_c0_g1_1139_TPlot.pdf
TRINITY_DN4352_c0_g1:1140	si_s72	TRINITY_DN4352_c0_g1	1128	1149	1140	-24.10	-16.50	0.684647302904564	6	4-13,1146-1137;14-21,1135-1128	1-3,1149-1147[UP5];x-x,1136-1136[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AAGGAAAGCAAAAAAAAUAAUA&UUCUAUUUUUUUU-CUUUCCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4352_c0_g1_1140_TPlot.pdf
TRINITY_DN4352_c0_g1:1339	si_s77	TRINITY_DN4352_c0_g1	1329	1348	1339	-25.50	-17.70	0.694117647058824	4	1-11,1348-1338;14-21,1336-1329	12-13,1337-1337[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	GAAGAAAGC-AAGAAAAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4352_c0_g1_1339_TPlot.pdf
TRINITY_DN4352_c0_g1:2380	si_s148	TRINITY_DN4352_c0_g1	2369	2389	2380	-34.80	-24.60	0.706896551724138	10.5	6-21,2384-2369	1-5,2389-2385[UP5]	((((((((((((((((.....&.....))))))))))))))))	CAUGGGCUUCCUUUGGCAUUA&AAAACCCAAAGGAGGUUCAUG	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s148_TRINITY_DN4352_c0_g1_2380_TPlot.pdf
TRINITY_DN4352_c0_g1:2381	si_s147	TRINITY_DN4352_c0_g1	2370	2390	2381	-33.10	-22.10	0.667673716012085	12.5	7-21,2384-2370	1-6,2390-2385[UP5]	(((((((((((((((......&......)))))))))))))))	AUGGGCUUCCUUUGGCAUUAU&AAAAACCCAAAGGAGGUUCAU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN4352_c0_g1_2381_TPlot.pdf
TRINITY_DN4352_c0_g1:2530	si_s639	TRINITY_DN4352_c0_g1	2519	2539	2530	-40.60	-27.80	0.684729064039409	7	1-8,2539-2532;10-13,2530-2527;15-18,2525-2522	9-9,2531-2531[SIL];14-14,2526-2526[SIL];19-21,2521-2519[UP3]	...((((.((((.((((((((&)))))))).)))).))))...	GCCUCGAAGGCAUACGCCUGC&GUAGGCGUUUGCCCUCGAUAC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN4352_c0_g1_2530_TPlot.pdf
TRINITY_DN4352_c0_g1:2531	si_s638	TRINITY_DN4352_c0_g1	2520	2540	2531	-40.30	-27.90	0.692307692307692	7	2-9,2539-2532;11-14,2530-2527;16-19,2525-2522	1-1,2540-2540[UP5];10-10,2531-2531[SIL];15-15,2526-2526[SIL];20-21,2521-2520[UP3]	..((((.((((.((((((((.&.)))))))).)))).))))..	CCUCGAAGGCAUACGCCUGCA&CGUAGGCGUUUGCCCUCGAUA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN4352_c0_g1_2531_TPlot.pdf
TRINITY_DN4353_c0_g1:1231	si_s102	TRINITY_DN4353_c0_g1	1220	1240	1231	-34.10	-22.58	0.66217008797654	8.5	3-15,1238-1226;19-21,1222-1220	1-2,1240-1239[UP5];16-18,1225-1223[SIL]	(((...(((((((((((((..&..)))))))))))))...)))	CUGCUGUCCAAUCCGAGGUUA&UCGCUUCGGAUUGGAAAAUAG	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN4353_c0_g1_1231_TPlot.pdf
TRINITY_DN4355_c0_g1:2147	si_a498	TRINITY_DN4355_c0_g1	2136	2154	2147	-33.50	-22.80	0.680597014925373	9	2-6,2153-2149;9-18,2148-2139	1-1,2154-2154[UP5];7-8,x-x[BULq];19-21,2138-2136[UP3]	...((((((((((--(((((.&.)))))..))))))))))...	GCCGGAAGACGAA--GCGACC&UGUCGUUUUUCGUCUUCCUUG	4	0.999999990527863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4355_c0_g1_2147_TPlot.pdf
TRINITY_DN4356_c0_g1:1131	si_a406	TRINITY_DN4356_c0_g1	1120	1140	1131	-19.80	-13.90	0.702020202020202	6	1-17,1140-1124	18-21,1123-1120[UP3]	....(((((((((((((((((&)))))))))))))))))....	GCAUAAUAUAAAUGAAACAAU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999993951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4356_c0_g1_1131_TPlot.pdf
TRINITY_DN4356_c0_g1:1136	si_a401	TRINITY_DN4356_c0_g1	1125	1145	1136	-22.60	-14.80	0.654867256637168	8	5-21,1141-1125	1-4,1145-1142[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUAUAAAUGAAACAAUUGUUG&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999999106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN4356_c0_g1_1136_TPlot.pdf
TRINITY_DN4356_c0_g1:1188	si_a406	TRINITY_DN4356_c0_g1	1177	1197	1188	-19.80	-15.40	0.777777777777778	5	1-18,1197-1180	19-21,1179-1177[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGCAAAUAUAAAUGAAACAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4356_c0_g1_1188_TPlot.pdf
TRINITY_DN4356_c0_g1:1302	si_a409	TRINITY_DN4356_c0_g1	1291	1311	1302	-19.50	-12.80	0.656410256410256	9	1-15,1311-1297	16-21,1296-1291[UP3]	......(((((((((((((((&)))))))))))))))......	GGCUGGAAAUAUAGAUGAAAC&GUUUUGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4356_c0_g1_1302_TPlot.pdf
TRINITY_DN4356_c0_g1:1304	si_a407	TRINITY_DN4356_c0_g1	1293	1313	1304	-19.80	-14.50	0.732323232323232	7	1-17,1313-1297	18-21,1296-1293[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUGGAAAUAUAGAUGAAACAA&UUGUUUUGUUUAUAUUUAAAU	4	0.99998897367038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4356_c0_g1_1304_TPlot.pdf
TRINITY_DN4356_c0_g1:1308	si_a403	TRINITY_DN4356_c0_g1	1297	1317	1308	-22.00	-15.60	0.709090909090909	7.5	4-21,1314-1297	1-3,1317-1315[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAAUAUAGAUGAAACAAUAAU&AGAAUUGUUUUGUUUAUAUUU	3	0.999985394663513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN4356_c0_g1_1308_TPlot.pdf
TRINITY_DN4356_c0_g1:1975	si_s41	TRINITY_DN4356_c0_g1	1964	1984	1975	-25.00	-21.10	0.844	5	1-16,1984-1969;19-20,1966-1965	17-18,1968-1967[SIL];21-21,1964-1964[UP3]	.((..((((((((((((((((&))))))))))))))))..)).	AGAUCUCCAAUUGUUGAAGAU&AUCUUUAAUAAUUGGAUUUCA	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN4356_c0_g1_1975_TPlot.pdf
TRINITY_DN4357_c0_g1:2913	si_a699	TRINITY_DN4357_c0_g1	2903	2921	2913	-33.60	-22.00	0.654761904761905	8	1-4,2921-2918;7-15,2916-2908;17-19,2907-2905	5-6,2917-2917[AILq];16-16,x-x[BULq];20-21,2904-2903[UP3]	..(((-(((((((((.-((((&))))..))))))))).)))..	AAUGG-AUGUGCCAGG-GUGU&ACACAACUGGUACAUUCCAAA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a699_TRINITY_DN4357_c0_g1_2913_TPlot.pdf
TRINITY_DN4357_c1_g1:590	si_a72	TRINITY_DN4357_c1_g1	579	599	590	-21.90	-15.30	0.698630136986301	8.5	1-17,599-583	18-21,582-579[UP3]	....(((((((((((((((((&)))))))))))))))))....	UGUUUGAAGAAUGGUUUGGAA&UUUCAAAUUGUUUUUCAUUAU	4	0.999999811047329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4357_c1_g1_590_TPlot.pdf
TRINITY_DN435_c0_g1:1002	si_s68	TRINITY_DN435_c0_g1	991	1011	1002	-23.10	-19.30	0.835497835497836	9	4-21,1008-991	1-3,1011-1009[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGAGAGAAGAGAUAGGAGACG&CAACUUCUAUUUUUUUUCUUU	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN435_c0_g1_1002_TPlot.pdf
TRINITY_DN435_c0_g1:1003	si_s67	TRINITY_DN435_c0_g1	992	1012	1003	-25.60	-19.00	0.7421875	10.5	5-21,1008-992	1-4,1012-1009[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGAGAAGAGAUAGGAGACGA&GCAACUUCUAUUUUUUUUCUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN435_c0_g1_1003_TPlot.pdf
TRINITY_DN435_c0_g1:782	si_s507	TRINITY_DN435_c0_g1	771	792	782	-22.70	-15.00	0.66079295154185	11	5-9,788-784;10-20,782-772	1-4,792-789[UP5];x-x,783-783[BULt];21-21,771-771[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	AUGAGGAUAUAGAAAUUGAUGA&AAAACAAUU-CUAUAUUCUUAA	4	0.999639012009468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN435_c0_g1_782_TPlot.pdf
TRINITY_DN435_c0_g1:863	si_s82	TRINITY_DN435_c0_g1	853	873	863	-28.90	-19.30	0.667820069204152	5.5	1-4,873-870;5-15,868-858;17-21,857-853	x-x,869-869[BULt];16-16,x-x[BULq]	(((((-(((((((((((.((((&))))-))))))))))).)))))	GAGAA-AAGAGAGGAAACGAGA&UUUC-UUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN435_c0_g1_863_TPlot.pdf
TRINITY_DN435_c0_g1:866	si_s74	TRINITY_DN435_c0_g1	855	876	866	-25.00	-16.80	0.672	6.5	1-7,876-870;8-16,868-860;18-21,858-855	x-x,869-869[BULt];17-17,859-859[SIL]	((((.(((((((((.(((((((&)))))))-))))))))).))))	GAAAAGAGAGGAAACGAGAUAG&CUAUUUU-UUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN435_c0_g1_866_TPlot.pdf
TRINITY_DN435_c0_g1:868	si_s77	TRINITY_DN435_c0_g1	857	878	868	-25.50	-16.80	0.658823529411765	8.5	1-4,878-875;6-9,873-870;10-20,868-858	5-5,874-874[SIL];x-x,869-869[BULt];21-21,857-857[UP3]	.(((((((((((.((((.((((&)))).))))-))))))))))).	AAAGAGAGGAAACGAGAUAGGA&UUUUUUUUC-UUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN435_c0_g1_868_TPlot.pdf
TRINITY_DN435_c0_g1:870	si_s71	TRINITY_DN435_c0_g1	858	879	870	-25.70	-17.80	0.692607003891051	8	1-10,879-870;11-19,868-860	x-x,869-869[BULt];20-21,859-858[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AAGAGAGGAAACGAGAUAGGAG&CUUCUAUUUU-UUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN435_c0_g1_870_TPlot.pdf
TRINITY_DN435_c0_g1:871	si_s70	TRINITY_DN435_c0_g1	859	880	871	-25.80	-18.40	0.713178294573643	8	2-11,879-870;12-20,868-860	1-1,880-880[UP5];x-x,869-869[BULt];21-21,859-859[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AGAGAGGAAACGAGAUAGGAGC&ACUUCUAUUUU-UUUUCUUUCC	4	0.999999998459931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN435_c0_g1_871_TPlot.pdf
TRINITY_DN435_c0_g1:873	si_s68	TRINITY_DN435_c0_g1	862	882	873	-23.10	-15.90	0.688311688311688	9.5	4-13,879-870;15-21,868-862	1-3,882-880[UP5];14-14,869-869[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GAGGAAACGAGAUAGGAGCAG&CAACUUCUAUUUUUUUUCUUU	2	0.999999998779127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN435_c0_g1_873_TPlot.pdf
TRINITY_DN435_c0_g1:897	si_a784	TRINITY_DN435_c0_g1	886	907	897	-24.70	-16.90	0.684210526315789	6	2-3,906-905;4-16,903-891;18-21,889-886	1-1,907-907[UP5];x-x,904-904[BULt];17-17,890-890[SIL]	((((.(((((((((((((.((.&.))-))))))))))))).))))	AAGAGAGAGGAAUAGAAGCAGG&ACU-CUUCUAUUUUUCUAUUUU	2	0.999999968168467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN435_c0_g1_897_TPlot.pdf
TRINITY_DN435_c0_g1:907	si_s81	TRINITY_DN435_c0_g1	894	916	907	-28.90	-20.80	0.719723183391003	6.5	1-12,916-905;14-18,903-899;19-21,896-894	13-13,904-904[SIL];x-x,898-897[BULt]	(((..(((((.((((((((((((&)))))))))))).)))))--)))	GGAAUAGAAGCAGGGAGAGAGAA&UUUUCUUUCCUUUCUUCU--UCU	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN435_c0_g1_907_TPlot.pdf
TRINITY_DN435_c0_g1:909	si_s79	TRINITY_DN435_c0_g1	898	918	909	-26.20	-21.20	0.809160305343511	5.5	2-14,917-905;16-20,903-899	1-1,918-918[UP5];15-15,904-904[SIL];21-21,898-898[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UAGAAGCAGGGAGAGAGAAAG&UUUUUUCUUUCCUUUCUUCUU	4	0.999947062853178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN435_c0_g1_909_TPlot.pdf
TRINITY_DN435_c0_g1:911	si_s77	TRINITY_DN435_c0_g1	900	920	911	-25.50	-22.00	0.862745098039216	5.5	2-16,919-905;18-21,903-900	1-1,920-920[UP5];17-17,904-904[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GAAGCAGGGAGAGAGAAAGAG&UUUUUUUUCUUUCCUUUCUUC	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN435_c0_g1_911_TPlot.pdf
TRINITY_DN435_c0_g1:912	si_s76	TRINITY_DN435_c0_g1	901	921	912	-23.60	-18.80	0.796610169491525	7.5	3-17,919-905;19-21,903-901	1-2,921-920[UP5];18-18,904-904[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	AAGCAGGGAGAGAGAAAGAGA&AUUUUUUUUCUUUCCUUUCUU	3	0.999999897547806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN435_c0_g1_912_TPlot.pdf
TRINITY_DN435_c0_g1:916	si_s72	TRINITY_DN435_c0_g1	905	926	916	-24.10	-17.10	0.70954356846473	10	2-4,925-923;6-21,920-905	1-1,926-926[UP5];5-5,922-921[AILt]	((((((((((((((((..(((.&.)))-.))))))))))))))))	AGGGAGAGAGAAAGAGAAAGGC&UUCU-AUUUUUUUUCUUUCCUU	2	0.999999999861725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN435_c0_g1_916_TPlot.pdf
TRINITY_DN435_c0_g1:980	si_a319	TRINITY_DN435_c0_g1	969	991	980	-22.40	-15.10	0.674107142857143	9	1-7,991-985;8-18,982-972	x-x,984-983[BULt];19-21,971-969[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	AGGAGAAAAGUCAUAAGGAUAAG&UUUAUCC--AUGAUUUUUUUAUU	4	0.999999999998121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN435_c0_g1_980_TPlot.pdf
TRINITY_DN435_c0_g1:981	si_a318	TRINITY_DN435_c0_g1	970	992	981	-22.50	-15.10	0.671111111111111	9	2-8,991-985;9-19,982-972	1-1,992-992[UP5];x-x,984-983[BULt];20-21,971-970[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	GGAGAAAAGUCAUAAGGAUAAGG&AUUUAUCC--AUGAUUUUUUUAU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN435_c0_g1_981_TPlot.pdf
TRINITY_DN435_c0_g1:993	si_s79	TRINITY_DN435_c0_g1	983	1002	993	-26.20	-18.60	0.709923664122137	5.5	1-14,1002-989;17-21,987-983	15-16,988-988[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	AAGGAU-AAGGAGAGAAGAGA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN435_c0_g1_993_TPlot.pdf
TRINITY_DN435_c0_g1:998	si_s72	TRINITY_DN435_c0_g1	983	1007	998	-24.10	-20.00	0.829875518672199	8.5	1-16,1007-992;17-21,987-983	x-x,991-988[BULt]	(((((....((((((((((((((((&))))))))))))))))----)))))	AAGGAUAAGGAGAGAAGAGAUAGGA&UUCUAUUUUUUUUCUU----UCCUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN435_c0_g1_998_TPlot.pdf
TRINITY_DN4362_c0_g1:1754	si_a470	TRINITY_DN4362_c0_g1	1743	1763	1754	-21.30	-13.90	0.652582159624413	9	4-10,1760-1754;12-21,1752-1743	1-3,1763-1761[UP5];11-11,1753-1753[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UAUAACAAUAUUUAUAUGCGU&UAAUAUGUAAUUAUUGUUAUA	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN4362_c0_g1_1754_TPlot.pdf
TRINITY_DN43632_c0_g1:203	si_s463	TRINITY_DN43632_c0_g1	191	212	203	-31.90	-20.90	0.655172413793103	8.5	4-17,209-196;18-18,194-194;20-21,192-191	1-3,212-210[UP5];x-x,195-195[BULt];19-19,193-193[SIL]	((.(.((((((((((((((...&...))))))))))))))-).))	GUGCAGUUGGAUAUGGGAUCUA&AUUAUCUCAUAUCCAAC-GGAU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN43632_c0_g1_203_TPlot.pdf
TRINITY_DN4363_c0_g1:826	si_a134	TRINITY_DN4363_c0_g1	815	835	826	-28.20	-19.02	0.674468085106383	10.5	1-9,835-827;16-21,820-815	10-15,826-821[SIL]	((((((......(((((((((&)))))))))......))))))	GCAACGUCAAGAUGCUAUUGC&GCAAUAGUAAUUAAUCGUUGU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN4363_c0_g1_826_TPlot.pdf
TRINITY_DN4364_c0_g1:237	si_s87	TRINITY_DN4364_c0_g1	225	246	237	-32.90	-22.20	0.674772036474164	5	1-5,246-242;7-16,240-231;18-21,228-225	6-6,241-241[SIL];17-17,230-229[AILt]	((((..((((((((((.(((((&))))).))))))))))-.))))	AAGCCCAAGAAGAAGGUAGGAA&UUCCUUUCUUCUUCUU-CGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4364_c0_g1_237_TPlot.pdf
TRINITY_DN4364_c0_g1:238	si_s86	TRINITY_DN4364_c0_g1	226	247	238	-32.90	-22.20	0.674772036474164	5	1-6,247-242;8-17,240-231;19-21,228-226	7-7,241-241[SIL];18-18,230-229[AILt]	(((..((((((((((.((((((&)))))).))))))))))-.)))	AGCCCAAGAAGAAGGUAGGAAA&UUUCCUUUCUUCUUCUU-CGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4364_c0_g1_238_TPlot.pdf
TRINITY_DN4364_c0_g1:246	si_s74	TRINITY_DN4364_c0_g1	235	255	246	-25.00	-18.20	0.728	6	1-14,255-242;16-20,240-236	15-15,241-241[SIL];21-21,235-235[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AGAAGGUAGGAAAAAAGGUGG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999998944216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4364_c0_g1_246_TPlot.pdf
TRINITY_DN4364_c0_g1:377	si_a749	TRINITY_DN4364_c0_g1	358	391	377	-42.10	-27.50	0.653206650831354	27.5	1-6,391-386;7-11,380-376;12-20,367-359	x-x,385-381[BULt];x-x,375-368[BULt];21-21,358-358[UP3]	.(((((((((........(((((.....((((((&))))))-----)))))--------))))))))).	CCCCAAGGGACUUGUCUAGGUUCGUUAAAUGGCC&GGCCAU-----GAACC--------UCCUUUGGGU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN4364_c0_g1_377_TPlot.pdf
TRINITY_DN4367_c0_g1:327	si_a634	TRINITY_DN4367_c0_g1	316	336	327	-26.40	-17.70	0.670454545454545	10.5	4-19,333-318	1-3,336-334[UP5];20-21,317-316[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAACUUAAAAGGAUUGACUAC&UAUGUCGAUUUUUUUGAGUAA	4	0.999999988356151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4367_c0_g1_327_TPlot.pdf
TRINITY_DN4367_c0_g1:721	si_a370	TRINITY_DN4367_c0_g1	712	730	721	-29.50	-19.20	0.650847457627119	8	2-10,729-721;14-20,719-713	1-1,730-730[UP5];11-13,720-720[AILq];21-21,712-712[UP3]	.(((((((.--(((((((((.&.)))))))))...))))))).	AGAAAUCAA--UUGGUCCGAA&AUCGGAUCAAAAAUGAUUUCG	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN4367_c0_g1_721_TPlot.pdf
TRINITY_DN4367_c0_g1:859	si_s509	TRINITY_DN4367_c0_g1	848	872	859	-22.80	-15.80	0.692982456140351	11.5	2-7,871-866;8-20,861-849	1-1,872-872[UP5];x-x,865-862[BULt];21-21,848-848[UP3]	.(((((((((((((....((((((.&.))))))----))))))))))))).	UAUUGAGAAUAUGGUUUUAAUUGUA&AACAAUU----CUAUAUUCUUAAUU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN4367_c0_g1_859_TPlot.pdf
TRINITY_DN4367_c0_g1:860	si_s508	TRINITY_DN4367_c0_g1	849	873	860	-22.80	-15.80	0.692982456140351	12.5	3-8,871-866;9-21,861-849	1-2,873-872[UP5];x-x,865-862[BULt]	(((((((((((((....((((((..&..))))))----)))))))))))))	AUUGAGAAUAUGGUUUUAAUUGUAG&AAACAAUU----CUAUAUUCUUAAU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN4367_c0_g1_860_TPlot.pdf
TRINITY_DN4367_c0_g1:861	si_s507	TRINITY_DN4367_c0_g1	850	874	861	-22.70	-14.80	0.651982378854626	14.5	4-9,871-866;10-21,861-850	1-3,874-872[UP5];x-x,865-862[BULt]	((((((((((((....((((((...&...))))))----))))))))))))	UUGAGAAUAUGGUUUUAAUUGUAGG&AAAACAAUU----CUAUAUUCUUAA	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN4367_c0_g1_861_TPlot.pdf
TRINITY_DN43704_c0_g1:42	si_s419	TRINITY_DN43704_c0_g1	31	48	42	-25.60	-18.40	0.71875	7	1-3,48-46;7-21,45-31	4-6,x-x[BULq]	(((((((((((((((---(((&)))...)))))))))))))))	UGUUGUUGUAUAGAA---GUC&GACAUAUUCUAUAUAACAAUA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s419_TRINITY_DN43704_c0_g1_42_TPlot.pdf
TRINITY_DN43714_c0_g1:118	si_a193	TRINITY_DN43714_c0_g1	107	127	118	-30.90	-24.80	0.802588996763754	7	2-17,126-111	1-1,127-127[UP5];18-21,110-107[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAGUUUAGUGGACAGGGAAGU&CUUUCCCUGUUCACUAAUAAA	0	0.00846898392135453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN43714_c0_g1_118_TPlot.pdf
TRINITY_DN43714_c0_g1:121	si_a190	TRINITY_DN43714_c0_g1	110	132	121	-32.00	-26.80	0.8375	7	1-5,132-128;6-20,125-111	x-x,127-126[BULt];21-21,110-110[UP3]	.(((((((((((((((..(((((&)))))--))))))))))))))).	UUUAGUGGACAGGGAAGUGGAUG&UAUCU--UUCCCUGUUCACUAAU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN43714_c0_g1_121_TPlot.pdf
TRINITY_DN43719_c0_g1:232	si_a371	TRINITY_DN43719_c0_g1	221	243	232	-30.30	-20.00	0.66006600660066	6.5	1-8,243-236;9-13,233-229;15-19,227-223;21-21,221-221	x-x,235-234[BULt];14-14,228-228[SIL];20-20,222-222[SIL]	(.(((((.(((((..((((((((&))))))))--))))).))))).)	UGGAAAUGGUUUUUGUGAUCCGA&UCGGAUCA--AAAAUGAUUUCGA	0	0.0449841357901888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN43719_c0_g1_232_TPlot.pdf
TRINITY_DN4372_c0_g1:459	si_s805	TRINITY_DN4372_c0_g1	448	469	459	-28.60	-20.20	0.706293706293706	7	1-9,469-461;10-12,459-457;14-20,455-449	x-x,460-460[BULt];13-13,456-456[SIL];21-21,448-448[UP3]	.(((((((.(((.(((((((((&)))))))))-))).))))))).	UGAAAAGGCGGCAGAAGAUAGA&UUUAUCUUC-GUUACCUUUUCU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4372_c0_g1_459_TPlot.pdf
TRINITY_DN4372_c0_g1:461	si_s804	TRINITY_DN4372_c0_g1	449	470	461	-27.90	-19.90	0.71326164874552	6.5	2-10,469-461;11-13,459-457;15-21,455-449	1-1,470-470[UP5];x-x,460-460[BULt];14-14,456-456[SIL]	(((((((.(((.(((((((((.&.)))))))))-))).)))))))	GAAAAGGCGGCAGAAGAUAGAC&UUUUAUCUUC-GUUACCUUUUC	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4372_c0_g1_461_TPlot.pdf
TRINITY_DN4373_c0_g2:1309	si_a79	TRINITY_DN4373_c0_g2	1295	1318	1309	-22.20	-14.80	0.666666666666667	7	1-12,1318-1307;13-17,1304-1300;18-21,1298-1295	x-x,1306-1305[BULt];x-x,1299-1299[BULt]	((((.(((((..((((((((((((&))))))))))))--)))))-))))	UUUCAUUAAUAGGAUGAAAAGCAA&UUGUUUUUCAUU--AUUAA-GAAA	4	0.999999898279812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN4373_c0_g2_1309_TPlot.pdf
TRINITY_DN4373_c0_g2:1314	si_a74	TRINITY_DN4373_c0_g2	1303	1323	1314	-22.20	-15.70	0.707207207207207	7.5	1-2,1323-1322;4-17,1320-1307	3-3,1321-1321[SIL];18-21,1306-1303[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUAGGAUGAAAAGCAAUUCGA&UCAAAUUGUUUUUCAUUAUUA	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4373_c0_g2_1314_TPlot.pdf
TRINITY_DN4373_c0_g2:1320	si_a68	TRINITY_DN4373_c0_g2	1309	1330	1320	-25.40	-19.20	0.755905511811024	6.5	1-5,1330-1326;6-8,1324-1322;10-21,1320-1309	x-x,1325-1325[BULt];9-9,1321-1321[SIL]	((((((((((((.(((.(((((&)))))-))).))))))))))))	UGAAAAGCAAUUCGAGUAGAGG&CUUCU-UUCAAAUUGUUUUUCA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4373_c0_g2_1320_TPlot.pdf
TRINITY_DN4373_c0_g2:870	si_s798	TRINITY_DN4373_c0_g2	859	879	870	-29.30	-19.70	0.672354948805461	8.5	1-3,879-877;5-6,875-874;8-19,872-861	4-4,876-876[SIL];7-7,873-873[SIL];20-21,860-859[UP3]	..((((((((((((.((.(((&))).)).))))))))))))..	AGAGCGAAGAUGAAUUGAGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4373_c0_g2_870_TPlot.pdf
TRINITY_DN4373_c0_g2:871	si_s797	TRINITY_DN4373_c0_g2	860	880	871	-30.00	-19.90	0.663333333333333	8.5	2-4,879-877;6-7,875-874;9-20,872-861	1-1,880-880[UP5];5-5,876-876[SIL];8-8,873-873[SIL];21-21,860-860[UP3]	.((((((((((((.((.(((.&.))).)).)))))))))))).	GAGCGAAGAUGAAUUGAGAGA&GCUCGUAUUUUAUCUUCGUUA	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN4373_c0_g2_871_TPlot.pdf
TRINITY_DN4373_c0_g2:875	si_s80	TRINITY_DN4373_c0_g2	864	884	875	-28.20	-18.60	0.659574468085106	7.5	1-10,884-875;13-15,872-870;17-21,868-864	11-12,874-873[SIL];16-16,869-869[SIL]	(((((.(((..((((((((((&))))))))))..))).)))))	GAAGAUGAAUUGAGAGAAGAG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4373_c0_g2_875_TPlot.pdf
TRINITY_DN4373_c0_g2:880	si_s899	TRINITY_DN4373_c0_g2	871	889	880	-28.30	-19.10	0.674911660777385	5.5	2-11,888-879;14-21,878-871	1-1,889-889[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	AAUUGAGA--GAAGAGGAAGA&GCUUUCUCUUCAAUUUCAAUU	3	0.9999995773829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4373_c0_g2_880_TPlot.pdf
TRINITY_DN4373_c0_g2:917	si_a767	TRINITY_DN4373_c0_g2	906	926	917	-30.10	-22.50	0.747508305647841	6	1-18,926-909	19-21,908-906[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCUUUGAGUCAAUCAGAAGCU&GGUUUUUGAUUGAUUCAACUC	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN4373_c0_g2_917_TPlot.pdf
TRINITY_DN4376_c0_g1:559	si_s805	TRINITY_DN4376_c0_g1	548	568	559	-28.60	-18.60	0.65034965034965	11.5	6-12,563-557;14-21,555-548	1-5,568-564[UP5];13-13,556-556[SIL]	((((((((.(((((((.....&.....))))))).))))))))	GGGAGAGGAAACGAAGUACCG&UUUAUCUUCGUUACCUUUUCU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4376_c0_g1_559_TPlot.pdf
TRINITY_DN4376_c0_g1:906	si_s377	TRINITY_DN4376_c0_g1	894	915	906	-44.10	-29.90	0.678004535147392	9	3-13,913-903;14-19,901-896	1-2,915-914[UP5];x-x,902-902[BULt];20-21,895-894[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	CCGAGGUGAGGCACGUGAGCCC&UCGCUCGCGUGUC-CGCCUUAC	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN4376_c0_g1_906_TPlot.pdf
TRINITY_DN4378_c0_g1:4317	si_a666	TRINITY_DN4378_c0_g1	4306	4327	4317	-31.60	-20.80	0.658227848101266	9.5	3-6,4325-4322;7-7,4320-4320;9-21,4318-4306	1-2,4327-4326[UP5];x-x,4321-4321[BULt];8-8,4319-4319[SIL]	(((((((((((((.(.((((..&..))))-).)))))))))))))	GAGUGGGGAAUUAUUAAGGCCA&AUGCCU-AUUGAUUCCUUAUUC	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN4378_c0_g1_4317_TPlot.pdf
TRINITY_DN437_c0_g1:1873	si_s296	TRINITY_DN437_c0_g1	1862	1882	1873	-31.60	-22.00	0.69620253164557	6	1-9,1882-1874;12-21,1871-1862	10-11,1873-1872[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	AUUUUCGCAAAAUUAAUCGAC&GUCGAUUGGAAUUGCGAAAAU	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN437_c0_g1_1873_TPlot.pdf
TRINITY_DN437_c0_g1:509	si_s806	TRINITY_DN437_c0_g1	499	518	509	-28.60	-22.00	0.769230769230769	7	4-17,515-502;19-21,501-499	1-3,518-516[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	AAG-AAAGGUGACGAAGAAAU&UUAUCUUCGUUACCUUUUCUU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN437_c0_g1_509_TPlot.pdf
TRINITY_DN437_c0_g1:511	si_s804	TRINITY_DN437_c0_g1	500	520	511	-27.90	-21.80	0.781362007168459	11	6-20,515-501	1-5,520-516[UP5];21-21,500-500[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAAAGGUGACGAAGAAAUAA&UUUUAUCUUCGUUACCUUUUC	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN437_c0_g1_511_TPlot.pdf
TRINITY_DN437_c0_g1:513	si_s802	TRINITY_DN437_c0_g1	502	522	513	-26.40	-20.50	0.776515151515152	13.5	8-21,515-502	1-7,522-516[UP5]	((((((((((((((.......&.......))))))))))))))	AAAGGUGACGAAGAAAUAACG&UAUUUUAUCUUCGUUACCUUU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN437_c0_g1_513_TPlot.pdf
TRINITY_DN437_c0_g1:514	si_s801	TRINITY_DN437_c0_g1	503	523	514	-28.20	-19.60	0.695035460992908	15.5	9-21,515-503	1-8,523-516[UP5]	(((((((((((((........&........)))))))))))))	AAGGUGACGAAGAAAUAACGA&GUAUUUUAUCUUCGUUACCUU	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN437_c0_g1_514_TPlot.pdf
TRINITY_DN437_c0_g1:515	si_s800	TRINITY_DN437_c0_g1	504	522	515	-29.70	-19.40	0.653198653198653	8.5	1-3,522-520;4-6,518-516;10-21,515-504	x-x,519-519[BULt];7-9,x-x[BULq]	((((((((((((---(((.(((&)))-)))...))))))))))))	AGGUGACGAAGA---AAUAACG&CGU-AUUUUAUCUUCGUUACCU	3	0.999974771577817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN437_c0_g1_515_TPlot.pdf
TRINITY_DN4380_c0_g1:1579	si_a411	TRINITY_DN4380_c0_g1	1568	1588	1579	-17.90	-14.30	0.798882681564246	7.5	2-17,1587-1572	1-1,1588-1588[UP5];18-21,1571-1568[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUUAAUUUGAAUAUGGACAAU&UUUGUUUAUAUUUAAAUAAAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4380_c0_g1_1579_TPlot.pdf
TRINITY_DN4380_c0_g1:1580	si_a410	TRINITY_DN4380_c0_g1	1569	1589	1580	-17.80	-14.30	0.803370786516854	8.5	3-18,1587-1572	1-2,1589-1588[UP5];19-21,1571-1569[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUAAUUUGAAUAUGGACAAUG&UUUUGUUUAUAUUUAAAUAAA	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4380_c0_g1_1580_TPlot.pdf
TRINITY_DN4380_c0_g1:1582	si_a408	TRINITY_DN4380_c0_g1	1571	1591	1582	-20.10	-16.10	0.800995024875622	7.5	2-3,1590-1589;5-20,1587-1572	1-1,1591-1591[UP5];4-4,1588-1588[SIL];21-21,1571-1571[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	AAUUUGAAUAUGGACAAUGCU&UGUUUUGUUUAUAUUUAAAUA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4380_c0_g1_1582_TPlot.pdf
TRINITY_DN4380_c0_g1:1655	si_a80	TRINITY_DN4380_c0_g1	1644	1664	1655	-22.10	-17.90	0.809954751131222	6.5	2-17,1663-1648	1-1,1664-1664[UP5];18-21,1647-1644[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAUACUUGAUAAUGAAAGACC&UGUUUUUCAUUAUUAAGAAAA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN4380_c0_g1_1655_TPlot.pdf
TRINITY_DN4380_c0_g1:1656	si_a79	TRINITY_DN4380_c0_g1	1645	1665	1656	-22.20	-17.90	0.806306306306306	7.5	3-18,1663-1648	1-2,1665-1664[UP5];19-21,1647-1645[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUACUUGAUAAUGAAAGACCC&UUGUUUUUCAUUAUUAAGAAA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN4380_c0_g1_1656_TPlot.pdf
TRINITY_DN4380_c0_g1:1657	si_a78	TRINITY_DN4380_c0_g1	1646	1666	1657	-22.30	-17.90	0.802690582959641	8.5	4-19,1663-1648	1-3,1666-1664[UP5];20-21,1647-1646[UP3]	..((((((((((((((((...&...))))))))))))))))..	UACUUGAUAAUGAAAGACCCU&AUUGUUUUUCAUUAUUAAGAA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN4380_c0_g1_1657_TPlot.pdf
TRINITY_DN4380_c0_g1:1658	si_a77	TRINITY_DN4380_c0_g1	1647	1667	1658	-22.20	-17.90	0.806306306306306	9.5	5-20,1663-1648	1-4,1667-1664[UP5];21-21,1647-1647[UP3]	.((((((((((((((((....&....)))))))))))))))).	ACUUGAUAAUGAAAGACCCUA&AAUUGUUUUUCAUUAUUAAGA	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN4380_c0_g1_1658_TPlot.pdf
TRINITY_DN4380_c0_g1:1660	si_a75	TRINITY_DN4380_c0_g1	1649	1669	1660	-21.30	-14.90	0.699530516431925	12.5	7-21,1663-1649	1-6,1669-1664[UP5]	(((((((((((((((......&......)))))))))))))))	UUGAUAAUGAAAGACCCUAAC&CAAAUUGUUUUUCAUUAUUAA	4	0.99999838304197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN4380_c0_g1_1660_TPlot.pdf
TRINITY_DN4382_c0_g1:1456	si_s433	TRINITY_DN4382_c0_g1	1445	1465	1456	-21.10	-14.60	0.691943127962085	9.5	1-7,1465-1459;10-17,1456-1449	8-9,1458-1457[SIL];18-21,1448-1445[UP3]	....((((((((..(((((((&)))))))..))))))))....	CGGGGAUAUGUAUGUGUUGUU&AACAAUAAUUACAUAUUAUAU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN4382_c0_g1_1456_TPlot.pdf
TRINITY_DN4382_c0_g1:1458	si_s431	TRINITY_DN4382_c0_g1	1447	1467	1458	-21.10	-15.40	0.729857819905213	9.5	2-9,1466-1459;12-19,1456-1449	1-1,1467-1467[UP5];10-11,1458-1457[SIL];20-21,1448-1447[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	GGGAUAUGUAUGUGUUGUUGC&AUAACAAUAAUUACAUAUUAU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN4382_c0_g1_1458_TPlot.pdf
TRINITY_DN4382_c0_g1:1460	si_s429	TRINITY_DN4382_c0_g1	1449	1469	1460	-21.10	-15.00	0.710900473933649	10.5	4-11,1466-1459;14-21,1456-1449	1-3,1469-1467[UP5];12-13,1458-1457[SIL]	((((((((..((((((((...&...))))))))..))))))))	GAUAUGUAUGUGUUGUUGCAU&AUAUAACAAUAAUUACAUAUU	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN4382_c0_g1_1460_TPlot.pdf
TRINITY_DN4382_c0_g1:1479	si_a634	TRINITY_DN4382_c0_g1	1469	1488	1479	-26.40	-17.30	0.65530303030303	10	3-11,1486-1478;14-19,1476-1471	1-2,1488-1487[UP5];12-13,1477-1477[AILq];20-21,1470-1469[UP3]	..((((((.-(((((((((..&..)))))))))..))))))..	UGGCUCGAU-AAAUCGGCAGU&UAUGUCGAUUUUUUUGAGUAA	4	0.99999999999152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4382_c0_g1_1479_TPlot.pdf
TRINITY_DN4382_c0_g1:1480	si_a633	TRINITY_DN4382_c0_g1	1470	1489	1480	-26.40	-17.30	0.65530303030303	10	4-12,1486-1478;15-20,1476-1471	1-3,1489-1487[UP5];13-14,1477-1477[AILq];21-21,1470-1470[UP3]	.((((((.-(((((((((...&...)))))))))..)))))).	GGCUCGAU-AAAUCGGCAGUA&UUAUGUCGAUUUUUUUGAGUA	2	0.99999964397168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4382_c0_g1_1480_TPlot.pdf
TRINITY_DN4382_c0_g1:1481	si_a632	TRINITY_DN4382_c0_g1	1471	1490	1481	-26.10	-17.30	0.662835249042146	8	1-2,1490-1489;5-13,1486-1478;16-21,1476-1471	3-4,1488-1487[SIL];14-15,1477-1477[AILq]	((((((.-(((((((((..((&))..)))))))))..))))))	GCUCGAU-AAAUCGGCAGUAU&AUUAUGUCGAUUUUUUUGAGU	3	0.999999991842697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4382_c0_g1_1481_TPlot.pdf
TRINITY_DN4382_c0_g1:3180	si_s68	TRINITY_DN4382_c0_g1	3168	3189	3180	-23.10	-15.70	0.67965367965368	8	4-16,3186-3174;17-21,3172-3168	1-3,3189-3187[UP5];x-x,3173-3173[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAAGGUAAAAAGAUAGAAGAUA&CAACUUCUAUUUUUUU-UCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4382_c0_g1_3180_TPlot.pdf
TRINITY_DN4382_c1_g1:1117	si_s816	TRINITY_DN4382_c1_g1	1106	1126	1117	-24.90	-16.40	0.65863453815261	7.5	1-9,1126-1118;11-14,1116-1113;16-20,1111-1107	10-10,1117-1117[SIL];15-15,1112-1112[SIL];21-21,1106-1106[UP3]	.(((((.((((.(((((((((&))))))))).)))).))))).	CUUCGUCAUUGCGAGGAGGUA&UACCUUUUCUUAAUAAUGAAA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN4382_c1_g1_1117_TPlot.pdf
TRINITY_DN4382_c1_g1:1120	si_a506	TRINITY_DN4382_c1_g1	1109	1130	1120	-33.40	-22.10	0.661676646706587	8	1-5,1130-1126;6-13,1124-1117;15-18,1115-1112	x-x,1125-1125[BULt];14-14,1116-1116[SIL];19-21,1111-1109[UP3]	...((((.((((((((.(((((&)))))-)))))))).))))...	CGUCAUUGCGAGGAGGUACGAA&UUCGU-CUUCCUUGGAAUGUAA	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN4382_c1_g1_1120_TPlot.pdf
TRINITY_DN4382_c1_g1:1121	si_a505	TRINITY_DN4382_c1_g1	1110	1131	1121	-33.30	-22.50	0.675675675675676	7	1-6,1131-1126;7-14,1124-1117;16-19,1115-1112	x-x,1125-1125[BULt];15-15,1116-1116[SIL];20-21,1111-1110[UP3]	..((((.((((((((.((((((&))))))-)))))))).))))..	GUCAUUGCGAGGAGGUACGAAG&UUUCGU-CUUCCUUGGAAUGUA	2	0.990718684271405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN4382_c1_g1_1121_TPlot.pdf
TRINITY_DN4382_c1_g1:1131	si_a496	TRINITY_DN4382_c1_g1	1119	1141	1131	-32.40	-21.60	0.666666666666667	10	1-7,1141-1135;10-15,1131-1126;16-21,1124-1119	8-9,1134-1132[AILt];x-x,1125-1125[BULt]	((((((.((((((...(((((((&)))))))-..))))))-))))))	AGGAGGUACGAAGUACCGACGUG&UAUGUCG-UUUUUCGU-CUUCCU	3	0.999999999970662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN4382_c1_g1_1131_TPlot.pdf
TRINITY_DN4382_c1_g1:336	si_s809	TRINITY_DN4382_c1_g1	325	346	336	-28.50	-19.20	0.673684210526316	7.5	1-5,346-342;6-14,340-332;16-19,330-327	x-x,341-341[BULt];15-15,331-331[SIL];20-21,326-325[UP3]	..((((.(((((((((.(((((&)))))-))))))))).))))..	GGUAGGUAAAGGUAGCAGAGGA&UCUUC-GUUACCUUUUCUUAAU	2	0.999939956558842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4382_c1_g1_336_TPlot.pdf
TRINITY_DN4382_c1_g1:337	si_s808	TRINITY_DN4382_c1_g1	326	347	337	-28.60	-19.20	0.671328671328671	7.5	2-6,346-342;7-15,340-332;17-20,330-327	1-1,347-347[UP5];x-x,341-341[BULt];16-16,331-331[SIL];21-21,326-326[UP3]	.((((.(((((((((.(((((.&.)))))-))))))))).)))).	GUAGGUAAAGGUAGCAGAGGAG&AUCUUC-GUUACCUUUUCUUAA	3	0.999999994981852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN4382_c1_g1_337_TPlot.pdf
TRINITY_DN4382_c1_g1:5146	si_s589	TRINITY_DN4382_c1_g1	5136	5155	5146	-32.70	-24.00	0.73394495412844	8.5	4-11,5152-5145;14-21,5143-5136	1-3,5155-5153[UP5];12-13,5144-5144[AILq]	((((((((.-((((((((...&...))))))))..))))))))	CGCUUGGGG-UAUCCAUGCAA&AAUCAUGGAUAAAUCCAAGCG	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s589_TRINITY_DN4382_c1_g1_5146_TPlot.pdf
TRINITY_DN4382_c1_g1:58	si_s761	TRINITY_DN4382_c1_g1	46	67	58	-25.90	-16.90	0.652509652509653	8	2-7,66-61;10-14,58-54;15-20,52-47	1-1,67-67[UP5];8-9,60-59[SIL];x-x,53-53[BULt];21-21,46-46[UP3]	.((((((.(((((..((((((.&.))))))..)))))-)))))).	CGUGAUUAAGUCGGCGUUGUUG&AAACAACAACGAUU-AAUUACU	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN4382_c1_g1_58_TPlot.pdf
TRINITY_DN4382_c1_g1:59	si_s760	TRINITY_DN4382_c1_g1	47	68	59	-25.20	-16.60	0.658730158730159	9	3-8,66-61;11-15,58-54;16-21,52-47	1-2,68-67[UP5];9-10,60-59[SIL];x-x,53-53[BULt]	((((((.(((((..((((((..&..))))))..)))))-))))))	GUGAUUAAGUCGGCGUUGUUGC&AAAACAACAACGAUU-AAUUAC	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s760_TRINITY_DN4382_c1_g1_59_TPlot.pdf
TRINITY_DN4383_c0_g1:228	si_a70	TRINITY_DN4383_c0_g1	217	237	228	-23.90	-16.60	0.694560669456067	5	1-12,237-226;14-19,224-219	13-13,225-225[SIL];20-21,218-217[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	GUUGGAAGCUAAUUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4383_c0_g1_228_TPlot.pdf
TRINITY_DN4383_c0_g1:230	si_a68	TRINITY_DN4383_c0_g1	219	239	230	-25.40	-19.70	0.775590551181102	2.5	1-14,239-226;16-21,224-219	15-15,225-225[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UGGAAGCUAAUUUGAAAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4383_c0_g1_230_TPlot.pdf
TRINITY_DN4383_c0_g1:231	si_a67	TRINITY_DN4383_c0_g1	220	240	231	-27.20	-22.50	0.827205882352941	2.5	1-15,240-226;17-21,224-220	16-16,225-225[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GGAAGCUAAUUUGAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4383_c0_g1_231_TPlot.pdf
TRINITY_DN4383_c0_g1:234	si_a64	TRINITY_DN4383_c0_g1	222	243	234	-29.40	-24.50	0.833333333333333	2.5	2-17,242-227;18-21,225-222	1-1,243-243[UP5];x-x,226-226[BULt]	((((.((((((((((((((((.&.))))))))))))))))-))))	AAGCUAAUUUGAAAGAAGCGAU&CUCGCUUCUUUCAAAUU-GUUU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN4383_c0_g1_234_TPlot.pdf
TRINITY_DN4383_c0_g1:236	si_a62	TRINITY_DN4383_c0_g1	225	244	236	-32.20	-24.10	0.748447204968944	3.5	1-2,244-243;4-20,242-226	3-3,x-x[BULq];21-21,225-225[UP3]	.(((((((((((((((((-((&)).))))))))))))))))).	CUAAUUUGAAAGAAGCGA-UC&GACUCGCUUCUUUCAAAUUGU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN4383_c0_g1_236_TPlot.pdf
TRINITY_DN4383_c0_g1:239	si_a59	TRINITY_DN4383_c0_g1	228	247	239	-34.00	-25.80	0.758823529411765	3	2-5,246-243;7-21,242-228	1-1,247-247[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AUUUGAAAGAAGCGA-UCGAA&GUCGACUCGCUUCUUUCAAAU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN4383_c0_g1_239_TPlot.pdf
TRINITY_DN4383_c0_g1:240	si_a58	TRINITY_DN4383_c0_g1	229	248	240	-34.60	-24.60	0.710982658959538	5	3-6,246-243;8-21,242-229	1-2,248-247[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	UUUGAAAGAAGCGA-UCGAAG&AGUCGACUCGCUUCUUUCAAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN4383_c0_g1_240_TPlot.pdf
TRINITY_DN4383_c0_g1:516	si_a407	TRINITY_DN4383_c0_g1	505	525	516	-19.80	-13.60	0.686868686868687	9	1-15,525-511	16-21,510-505[UP3]	......(((((((((((((((&)))))))))))))))......	GAAAGCGUGUAAACAGAAUAA&UUGUUUUGUUUAUAUUUAAAU	4	0.999999999999724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4383_c0_g1_516_TPlot.pdf
TRINITY_DN4383_c0_g1:517	si_a406	TRINITY_DN4383_c0_g1	506	526	517	-19.80	-13.60	0.686868686868687	9	2-16,525-511	1-1,526-526[UP5];17-21,510-506[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAGCGUGUAAACAGAAUAAA&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4383_c0_g1_517_TPlot.pdf
TRINITY_DN4383_c0_g1:667	si_s545	TRINITY_DN4383_c0_g1	656	676	667	-26.80	-18.40	0.686567164179104	6.5	1-8,676-669;10-18,667-659	9-9,668-668[SIL];19-21,658-656[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GUAAAUUUUAUUAUGGUCGGA&UCCGAUCAAAAUAGAAUUAAU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s545_TRINITY_DN4383_c0_g1_667_TPlot.pdf
TRINITY_DN4383_c0_g1:668	si_s544	TRINITY_DN4383_c0_g1	657	677	668	-26.90	-18.40	0.684014869888476	6.5	2-9,676-669;11-19,667-659	1-1,677-677[UP5];10-10,668-668[SIL];20-21,658-657[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UAAAUUUUAUUAUGGUCGGAG&AUCCGAUCAAAAUAGAAUUAA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN4383_c0_g1_668_TPlot.pdf
TRINITY_DN4383_c0_g1:678	si_a26	TRINITY_DN4383_c0_g1	669	687	678	-28.00	-18.50	0.660714285714286	9.5	2-14,686-674;17-20,673-670	1-1,687-687[UP5];15-16,x-x[BULq];21-21,669-669[UP3]	.((((--(((((((((((((.&.)))))))))))))..)))).	UGGUC--GGAGCUGAAGGUGU&UUAUUUUUAGUUCUAAGACCG	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN4383_c0_g1_678_TPlot.pdf
TRINITY_DN4384_c0_g1:443	si_s311	TRINITY_DN4384_c0_g1	431	452	443	-30.60	-23.30	0.761437908496732	7.5	1-6,452-447;8-16,445-437;17-21,435-431	7-7,446-446[SIL];x-x,436-436[BULt]	(((((.(((((((((.((((((&)))))).)))))))))-)))))	GACGACGGAGGGCGGUGUUUUC&GAAAAUUCUGUCCUUC-UUGUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN4384_c0_g1_443_TPlot.pdf
TRINITY_DN4384_c0_g1:444	si_s310	TRINITY_DN4384_c0_g1	432	453	444	-32.10	-22.30	0.694704049844237	8	2-7,452-447;9-17,445-437;18-21,435-432	1-1,453-453[UP5];8-8,446-446[SIL];x-x,436-436[BULt]	((((.(((((((((.((((((.&.)))))).)))))))))-))))	ACGACGGAGGGCGGUGUUUUCA&CGAAAAUUCUGUCCUUC-UUGU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN4384_c0_g1_444_TPlot.pdf
TRINITY_DN4384_c0_g1:638	si_s281	TRINITY_DN4384_c0_g1	627	647	638	-35.10	-22.96	0.654131054131054	12.5	1-3,647-645;8-19,640-629	4-7,644-641[SIL];20-21,628-627[UP3]	..((((((((((((....(((&)))....))))))))))))..	UCUGGCUGGGCGUGGCUCGUC&GACAUAAUACGCCUAGUCGAU	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s281_TRINITY_DN4384_c0_g1_638_TPlot.pdf
TRINITY_DN4385_c0_g1:3024	si_s68	TRINITY_DN4385_c0_g1	3013	3040	3024	-23.10	-15.10	0.653679653679654	19.5	1-5,3040-3036;6-18,3028-3016	x-x,3035-3029[BULt];19-21,3015-3013[UP3]	...(((((((((((((.......(((((&)))))-------)))))))))))))...	GUUGAAAGAAAAUGGAGAGCUCCGGUUG&CAACU-------UCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4385_c0_g1_3024_TPlot.pdf
TRINITY_DN4385_c0_g1:5229	si_s68	TRINITY_DN4385_c0_g1	5218	5238	5229	-23.10	-15.30	0.662337662337662	12.5	4-18,5235-5221	1-3,5238-5236[UP5];19-21,5220-5218[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUUGGAGGAAGAUGGGAGCUC&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4385_c0_g1_5229_TPlot.pdf
TRINITY_DN4385_c0_g1:6751	si_a729	TRINITY_DN4385_c0_g1	6737	6760	6751	-41.60	-27.84	0.669230769230769	12	1-10,6760-6751;12-19,6746-6739	11-11,6750-6747[AILt];20-21,6738-6737[UP3]	..((((((((....((((((((((&))))))))))---.))))))))..	AUGGGGUAAAACAUGUGCCUGAGU&ACUCGGGCAU---CUUUACCCCUG	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a729_TRINITY_DN4385_c0_g1_6751_TPlot.pdf
TRINITY_DN4386_c0_g1:273	si_a566	TRINITY_DN4386_c0_g1	259	282	273	-36.40	-23.92	0.657142857142857	8	1-15,282-268;18-21,262-259	16-17,267-263[AILt]	((((.....(((((((((((((((&)))))))))))))))---..))))	GAACUCGAAAUGAUUUAUGGGGAG&CUCCCCGUGAAUCGU---AUGUUU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN4386_c0_g1_273_TPlot.pdf
TRINITY_DN4386_c0_g1:287	si_a772	TRINITY_DN4386_c0_g1	275	296	287	-29.80	-20.30	0.681208053691275	8	1-2,296-295;4-10,293-287;11-19,285-277	3-3,294-294[SIL];x-x,286-286[BULt];20-21,276-275[UP3]	..(((((((((.(((((((.((&)).)))))))-)))))))))..	AUGGGGAGUUGAAAUCAAUGGA&UUGAUUGAUU-CAACUCUUCUA	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN4386_c0_g1_287_TPlot.pdf
TRINITY_DN4387_c0_g1:1188	si_s74	TRINITY_DN4387_c0_g1	1178	1197	1188	-25.00	-16.50	0.66	9.5	1-10,1197-1188;12-17,1187-1182	11-11,x-x[BULq];18-21,1181-1178[UP3]	....((((((-((((((((((&)))))))))).))))))....	UACUGGAGAG-AAAAGAGUGG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4387_c0_g1_1188_TPlot.pdf
TRINITY_DN4387_c0_g1:1190	si_s72	TRINITY_DN4387_c0_g1	1180	1199	1190	-24.10	-16.70	0.692946058091286	8.5	2-12,1198-1188;14-19,1187-1182	1-1,1199-1199[UP5];13-13,x-x[BULq];20-21,1181-1180[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	CUGGAGAG-AAAAGAGUGGGU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4387_c0_g1_1190_TPlot.pdf
TRINITY_DN4387_c0_g1:1335	si_s79	TRINITY_DN4387_c0_g1	1323	1344	1335	-26.20	-17.20	0.656488549618321	12.5	5-11,1340-1334;12-19,1332-1325	1-4,1344-1341[UP5];x-x,1333-1333[BULt];20-21,1324-1323[UP3]	..((((((((.(((((((....&....)))))))-))))))))..	GUGGAGAAAGAGGAAGAAUACG&UUUUUUCUUUC-CUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4387_c0_g1_1335_TPlot.pdf
TRINITY_DN4387_c0_g1:1803	si_s76	TRINITY_DN4387_c0_g1	1792	1812	1803	-23.60	-16.50	0.699152542372881	3	1-14,1812-1799;16-19,1797-1794	15-15,1798-1798[SIL];20-21,1793-1792[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UUGAAAAGAAAGAAAAAAAAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4387_c0_g1_1803_TPlot.pdf
TRINITY_DN4387_c0_g1:1804	si_s75	TRINITY_DN4387_c0_g1	1793	1813	1804	-24.00	-17.60	0.733333333333333	2	1-15,1813-1799;17-20,1797-1794	16-16,1798-1798[SIL];21-21,1793-1793[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	UGAAAAGAAAGAAAAAAAAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999996303917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4387_c0_g1_1804_TPlot.pdf
TRINITY_DN4388_c0_g1:143	si_a628	TRINITY_DN4388_c0_g1	132	154	143	-27.10	-17.80	0.656826568265683	8	1-7,154-148;9-14,144-139;17-21,136-132	8-8,147-145[AILt];15-16,138-137[SIL]	(((((..((((((...(((((((&)))))))--.))))))..)))))	AAAAACUUCGACAAAAAAUACGC&GCGUAUU--AUGUCGAUUUUUUU	3	0.999999950567046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN4388_c0_g1_143_TPlot.pdf
TRINITY_DN438_c0_g1:1374	si_a613	TRINITY_DN438_c0_g1	1362	1383	1374	-35.30	-23.32	0.660623229461756	6.5	1-13,1383-1371;17-20,1366-1363	14-16,1370-1367[AILt];21-21,1362-1362[UP3]	.((((....(((((((((((((&)))))))))))))-...)))).	UUACGAUGGGGUCGAUUGGGAU&AUUCCAAUCGACU-AGGCGUAU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN438_c0_g1_1374_TPlot.pdf
TRINITY_DN438_c0_g1:1375	si_a612	TRINITY_DN438_c0_g1	1363	1384	1375	-35.10	-23.42	0.667236467236467	6.5	2-14,1383-1371;18-21,1366-1363	1-1,1384-1384[UP5];15-17,1370-1367[AILt]	((((....(((((((((((((.&.)))))))))))))-...))))	UACGAUGGGGUCGAUUGGGAUC&AAUUCCAAUCGACU-AGGCGUA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN438_c0_g1_1375_TPlot.pdf
TRINITY_DN438_c0_g1:1381	si_a606	TRINITY_DN438_c0_g1	1370	1390	1381	-32.60	-22.10	0.677914110429448	8	1-5,1390-1386;8-20,1383-1371	6-7,1385-1384[SIL];21-21,1370-1370[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	GGGUCGAUUGGGAUCUUGAAG&UUUCGCAAUUCCAAUCGACUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN438_c0_g1_1381_TPlot.pdf
TRINITY_DN438_c0_g1:164	si_a328	TRINITY_DN438_c0_g1	145	173	164	-30.10	-20.00	0.664451827242525	23	1-12,173-162;13-20,153-146	x-x,161-154[BULt];21-21,145-145[UP3]	.((((((((........((((((((((((&))))))))))))--------)))))))).	UGGACGGGGCCCAUAGAGAUGAAGAGGUC&GAUUUUUUUAUU--------CCUUGUCCC	3	0.999999654833138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN438_c0_g1_164_TPlot.pdf
TRINITY_DN438_c0_g1:2219	si_s198	TRINITY_DN438_c0_g1	2208	2227	2219	-30.80	-22.70	0.737012987012987	7	2-8,2226-2220;11-21,2218-2208	1-1,2227-2227[UP5];9-10,2219-2219[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	CAACUGGUACGC-CCAGAAUC&UAUUUUGGAAUGUACCAGUUG	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN438_c0_g1_2219_TPlot.pdf
TRINITY_DN438_c0_g1:2260	si_a784	TRINITY_DN438_c0_g1	2247	2269	2260	-24.70	-17.90	0.724696356275304	9	1-13,2269-2257;14-18,2254-2250	x-x,2256-2255[BULt];19-21,2249-2247[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	GGCGUGGACCAAAGUGGGAGAGU&ACUCUUCUAUUUU--UCUAUUUU	3	0.999995836868361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN438_c0_g1_2260_TPlot.pdf
TRINITY_DN438_c0_g1:2261	si_a783	TRINITY_DN438_c0_g1	2248	2270	2261	-24.70	-18.20	0.736842105263158	9	2-14,2269-2257;15-19,2254-2250	1-1,2270-2270[UP5];x-x,2256-2255[BULt];20-21,2249-2248[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	GCGUGGACCAAAGUGGGAGAGUG&AACUCUUCUAUUUU--UCUAUUU	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN438_c0_g1_2261_TPlot.pdf
TRINITY_DN438_c0_g1:2878	si_a794	TRINITY_DN438_c0_g1	2866	2887	2878	-28.60	-19.90	0.695804195804196	11	3-13,2885-2875;16-20,2871-2867	1-2,2887-2886[UP5];14-15,2874-2872[AILt];21-21,2866-2866[UP3]	.(((((...(((((((((((..&..)))))))))))-..))))).	CUCGGAGAGGGAAAGUGGGGUG&UUUUCUAUUUUCC-AAUCCGAA	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN438_c0_g1_2878_TPlot.pdf
TRINITY_DN438_c0_g1:2881	si_s67	TRINITY_DN438_c0_g1	2870	2889	2881	-25.60	-16.70	0.65234375	9	1-2,2889-2888;4-6,2886-2884;8-21,2883-2870	3-3,2887-2887[SIL];7-7,x-x[BULq]	((((((((((((((-(((.((&)).))).))))))))))))))	GAGAGGGAAAGUGG-GGUGGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN438_c0_g1_2881_TPlot.pdf
TRINITY_DN438_c0_g1:2925	si_a877	TRINITY_DN438_c0_g1	2915	2934	2925	-27.00	-18.00	0.666666666666667	10	1-12,2934-2923;14-15,2922-2921	13-13,x-x[BULq];16-21,2920-2915[UP3]	......((-((((((((((((&)))))))))))).))......	CGUCUCGA-UGCAGCUGAGUC&GAUUUAGUUGCAAUCAAUAUA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN438_c0_g1_2925_TPlot.pdf
TRINITY_DN438_c0_g1:2926	si_a876	TRINITY_DN438_c0_g1	2916	2935	2926	-27.30	-18.00	0.659340659340659	10	2-13,2934-2923;15-16,2922-2921	1-1,2935-2935[UP5];14-14,x-x[BULq];17-21,2920-2916[UP3]	.....((-((((((((((((.&.)))))))))))).)).....	GUCUCGA-UGCAGCUGAGUCG&AGAUUUAGUUGCAAUCAAUAU	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN438_c0_g1_2926_TPlot.pdf
TRINITY_DN438_c0_g1:2928	si_a874	TRINITY_DN438_c0_g1	2918	2937	2928	-26.70	-18.00	0.674157303370786	12	4-15,2934-2923;17-18,2922-2921	1-3,2937-2935[UP5];16-16,x-x[BULq];19-21,2920-2918[UP3]	...((-((((((((((((...&...)))))))))))).))...	CUCGA-UGCAGCUGAGUCGGU&AAAGAUUUAGUUGCAAUCAAU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN438_c0_g1_2928_TPlot.pdf
TRINITY_DN438_c0_g1:2929	si_a873	TRINITY_DN438_c0_g1	2919	2938	2929	-27.00	-18.00	0.666666666666667	13	5-16,2934-2923;18-19,2922-2921	1-4,2938-2935[UP5];17-17,x-x[BULq];20-21,2920-2919[UP3]	..((-((((((((((((....&....)))))))))))).))..	UCGA-UGCAGCUGAGUCGGUC&UAAAGAUUUAGUUGCAAUCAA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN438_c0_g1_2929_TPlot.pdf
TRINITY_DN438_c0_g1:2932	si_a870	TRINITY_DN438_c0_g1	2921	2941	2932	-24.80	-17.10	0.689516129032258	17.5	8-19,2934-2923	1-7,2941-2935[UP5];20-21,2922-2921[UP3]	..((((((((((((.......&.......))))))))))))..	GAUGCAGCUGAGUCGGUCCAU&UAUUAAAGAUUUAGUUGCAAU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN438_c0_g1_2932_TPlot.pdf
TRINITY_DN438_c0_g1:310	si_a639	TRINITY_DN438_c0_g1	300	319	310	-23.60	-16.50	0.699152542372881	6.5	1-11,319-309;13-16,308-305;19-21,302-300	12-12,x-x[BULq];17-18,304-303[SIL]	(((..((((-(((((((((((&))))))))))).))))..)))	AUAGUUUGC-CAGAAAAGUCG&CGAUUUUUUUGAGUAAUAUAU	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN438_c0_g1_310_TPlot.pdf
TRINITY_DN438_c0_g1:312	si_a637	TRINITY_DN438_c0_g1	302	321	312	-25.80	-17.70	0.686046511627907	7	1-13,321-309;15-18,308-305	14-14,x-x[BULq];19-21,304-302[UP3]	...((((-(((((((((((((&))))))))))))).))))...	AGUUUGC-CAGAAAAGUCGAU&GUCGAUUUUUUUGAGUAAUAU	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN438_c0_g1_312_TPlot.pdf
TRINITY_DN438_c0_g1:313	si_a636	TRINITY_DN438_c0_g1	303	322	313	-26.30	-18.50	0.703422053231939	6.5	1-14,322-309;16-19,308-305	15-15,x-x[BULq];20-21,304-303[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	GUUUGC-CAGAAAAGUCGAUA&UGUCGAUUUUUUUGAGUAAUA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN438_c0_g1_313_TPlot.pdf
TRINITY_DN438_c0_g1:509	si_a73	TRINITY_DN438_c0_g1	498	518	509	-21.90	-16.40	0.748858447488584	9	2-4,517-515;7-19,512-500	1-1,518-518[UP5];5-6,514-513[SIL];20-21,499-498[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	GCUGAUGAGAAGCAAGCUGAU&UUCAAAUUGUUUUUCAUUAUU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN438_c0_g1_509_TPlot.pdf
TRINITY_DN438_c0_g2:689	si_a633	TRINITY_DN438_c0_g2	676	698	689	-26.40	-17.20	0.651515151515151	8.5	1-12,698-687;13-15,684-682;17-21,680-676	x-x,686-685[BULt];16-16,681-681[SIL]	(((((.(((..((((((((((((&))))))))))))--))).)))))	UGCUCUGAAUCGAAUUGACAUAG&UUAUGUCGAUUU--UUUUGAGUA	3	0.99999999999862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN438_c0_g2_689_TPlot.pdf
TRINITY_DN438_c0_g2:690	si_a632	TRINITY_DN438_c0_g2	677	699	690	-26.10	-17.30	0.662835249042146	6.5	1-13,699-687;14-16,684-682;18-21,680-677	x-x,686-685[BULt];17-17,681-681[SIL]	((((.(((..(((((((((((((&)))))))))))))--))).))))	GCUCUGAAUCGAAUUGACAUAGU&AUUAUGUCGAUUU--UUUUGAGU	2	0.99999344876339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN438_c0_g2_690_TPlot.pdf
TRINITY_DN4390_c0_g1:1163	si_s72	TRINITY_DN4390_c0_g1	1152	1179	1163	-24.10	-16.50	0.684647302904564	21.5	2-9,1178-1171;10-19,1163-1154	1-1,1179-1179[UP5];x-x,1170-1164[BULt];20-21,1153-1152[UP3]	..((((((((((.......((((((((.&.))))))))-------))))))))))..	AUGGAGAGAGAAAUCGCAGGAGAUGGAG&UUCUAUUUU-------UUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4390_c0_g1_1163_TPlot.pdf
TRINITY_DN4390_c0_g1:1164	si_s71	TRINITY_DN4390_c0_g1	1153	1173	1164	-25.70	-17.76	0.691050583657588	11	1-5,1173-1169;10-20,1164-1154	6-9,1168-1165[SIL];21-21,1153-1153[UP3]	.(((((((((((....(((((&)))))....))))))))))).	UGGAGAGAGAAAUCGCAGGAG&CUUCUAUUUUUUUUCUUUCCU	0	0.666346312332535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4390_c0_g1_1164_TPlot.pdf
TRINITY_DN4392_c0_g1:2002	si_s71	TRINITY_DN4392_c0_g1	1990	2011	2002	-25.70	-22.10	0.859922178988327	7	1-11,2011-2001;13-21,1998-1990	12-12,2000-1999[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	GGGGAAGAAUUGAAAAUGGAAG&CUUCUAUUUUU-UUUCUUUCCU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4392_c0_g1_2002_TPlot.pdf
TRINITY_DN4392_c0_g1:2003	si_s70	TRINITY_DN4392_c0_g1	1991	2012	2003	-25.80	-21.00	0.813953488372093	6.5	2-12,2011-2001;14-21,1998-1991	1-1,2012-2012[UP5];13-13,2000-1999[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	GGGAAGAAUUGAAAAUGGAAGA&ACUUCUAUUUUU-UUUCUUUCC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4392_c0_g1_2003_TPlot.pdf
TRINITY_DN4392_c0_g1:2252	si_s92	TRINITY_DN4392_c0_g1	2240	2261	2252	-34.90	-24.00	0.687679083094556	8	1-14,2261-2248;15-17,2246-2244;19-19,2242-2242	x-x,2247-2247[BULt];18-18,2243-2243[SIL];20-21,2241-2240[UP3]	..(.(((.((((((((((((((&))))))))))))))-))).)..	AGCGGAAGGCGGAGAGGGAGGA&UUCUUCUUCUUCGC-UUCGGAU	3	0.999999947471868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4392_c0_g1_2252_TPlot.pdf
TRINITY_DN4392_c0_g1:2253	si_s91	TRINITY_DN4392_c0_g1	2241	2262	2253	-34.70	-24.90	0.717579250720461	7	1-15,2262-2248;16-18,2246-2244;20-20,2242-2242	x-x,2247-2247[BULt];19-19,2243-2243[SIL];21-21,2241-2241[UP3]	.(.(((.(((((((((((((((&)))))))))))))))-))).).	GCGGAAGGCGGAGAGGGAGGAA&UUUCUUCUUCUUCGC-UUCGGA	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4392_c0_g1_2253_TPlot.pdf
TRINITY_DN4392_c0_g1:2254	si_s82	TRINITY_DN4392_c0_g1	2242	2263	2254	-28.90	-23.50	0.813148788927336	6.5	1-14,2263-2250;15-20,2248-2243	x-x,2249-2249[BULt];21-21,2242-2242[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	CGGAAGGCGGAGAGGGAGGAAA&UUUCUUUCCUUUCU-UCUUCUU	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4392_c0_g1_2254_TPlot.pdf
TRINITY_DN4392_c0_g1:2257	si_s79	TRINITY_DN4392_c0_g1	2246	2266	2257	-26.20	-22.00	0.83969465648855	5.5	1-17,2266-2250;19-21,2248-2246	18-18,2249-2249[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	AGGCGGAGAGGGAGGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4392_c0_g1_2257_TPlot.pdf
TRINITY_DN4392_c0_g1:2260	si_s76	TRINITY_DN4392_c0_g1	2249	2269	2260	-23.60	-20.60	0.872881355932203	9.5	4-20,2266-2250	1-3,2269-2267[UP5];21-21,2249-2249[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGGAGAGGGAGGAAAAGAUUC&AUUUUUUUUCUUUCCUUUCUU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4392_c0_g1_2260_TPlot.pdf
TRINITY_DN4392_c0_g1:2261	si_s75	TRINITY_DN4392_c0_g1	2250	2270	2261	-24.00	-20.60	0.858333333333333	10.5	5-21,2266-2250	1-4,2270-2267[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGAGGGAGGAAAAGAUUCU&UAUUUUUUUUCUUUCCUUUCU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4392_c0_g1_2261_TPlot.pdf
TRINITY_DN4392_c0_g1:2262	si_s74	TRINITY_DN4392_c0_g1	2251	2271	2262	-25.00	-19.40	0.776	11.5	6-21,2266-2251	1-5,2271-2267[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAGGGAGGAAAAGAUUCUU&CUAUUUUUUUUCUUUCCUUUC	2	0.990718684271405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4392_c0_g1_2262_TPlot.pdf
TRINITY_DN4392_c0_g1:2263	si_s73	TRINITY_DN4392_c0_g1	2252	2272	2263	-24.00	-16.20	0.675	13.5	7-21,2266-2252	1-6,2272-2267[UP5]	(((((((((((((((......&......)))))))))))))))	AGAGGGAGGAAAAGAUUCUUG&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4392_c0_g1_2263_TPlot.pdf
TRINITY_DN4392_c0_g1:736	si_s312	TRINITY_DN4392_c0_g1	725	745	736	-29.00	-21.50	0.741379310344828	13	7-21,739-725	1-6,745-740[UP5]	(((((((((((((((......&......)))))))))))))))	UGACAGGAAGGAUAGCUUCGA&AAAAUUCUGUCCUUCUUGUUA	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4392_c0_g1_736_TPlot.pdf
TRINITY_DN4392_c0_g1:737	si_s311	TRINITY_DN4392_c0_g1	726	746	737	-30.60	-20.30	0.663398692810457	15	8-21,739-726	1-7,746-740[UP5]	((((((((((((((.......&.......))))))))))))))	GACAGGAAGGAUAGCUUCGAG&GAAAAUUCUGUCCUUCUUGUU	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN4392_c0_g1_737_TPlot.pdf
TRINITY_DN4393_c0_g1:1263	si_a786	TRINITY_DN4393_c0_g1	1247	1273	1263	-26.60	-18.30	0.68796992481203	10.5	1-9,1273-1265;10-16,1263-1257;17-21,1251-1247	x-x,1264-1264[BULt];x-x,1256-1252[BULt]	(((((.....(((((((.(((((((((&)))))))))-)))))))-----)))))	GGAAGCCAGUAUAGAAGCAGUAGAGGA&UCUUCUAUU-UUUCUAU-----UUUCC	2	0.999995762223937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4393_c0_g1_1263_TPlot.pdf
TRINITY_DN4393_c0_g1:1399	si_a408	TRINITY_DN4393_c0_g1	1388	1409	1399	-20.10	-13.30	0.661691542288557	7.5	2-9,1408-1401;11-21,1398-1388	1-1,1409-1409[UP5];10-10,1400-1399[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	UAUUUGAAUAUUUAAUAAAGCU&UGUUUUGUU-UAUAUUUAAAUA	3	0.999999999999975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4393_c0_g1_1399_TPlot.pdf
TRINITY_DN4393_c0_g1:985	si_s313	TRINITY_DN4393_c0_g1	974	994	985	-30.80	-21.10	0.685064935064935	14.5	5-19,990-976	1-4,994-991[UP5];20-21,975-974[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAGCGGGAGGGGCGGGCGAA&AAAUUCUGUCCUUCUUGUUAC	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN4393_c0_g1_985_TPlot.pdf
TRINITY_DN4393_c0_g1:986	si_s312	TRINITY_DN4393_c0_g1	975	995	986	-29.00	-21.10	0.727586206896552	15	6-20,990-976	1-5,995-991[UP5];21-21,975-975[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGCGGGAGGGGCGGGCGAAU&AAAAUUCUGUCCUUCUUGUUA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4393_c0_g1_986_TPlot.pdf
TRINITY_DN4394_c0_g1:1037	si_a351	TRINITY_DN4394_c0_g1	1026	1046	1037	-20.50	-14.50	0.707317073170732	13.5	6-19,1041-1028	1-5,1046-1042[UP5];20-21,1027-1026[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGCAGAAUAGAGUUGAAGGUG&AAAUAUUAAUUCUAUUUUGAU	2	0.970467387556055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN4394_c0_g1_1037_TPlot.pdf
TRINITY_DN4394_c0_g1:1038	si_a350	TRINITY_DN4394_c0_g1	1027	1047	1038	-20.30	-14.50	0.714285714285714	14.5	7-20,1041-1028	1-6,1047-1042[UP5];21-21,1027-1027[UP3]	.((((((((((((((......&......)))))))))))))).	GCAGAAUAGAGUUGAAGGUGA&AAAAUAUUAAUUCUAUUUUGA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN4394_c0_g1_1038_TPlot.pdf
TRINITY_DN4394_c0_g1:1039	si_a349	TRINITY_DN4394_c0_g1	1028	1048	1039	-21.30	-14.30	0.671361502347418	15.5	8-21,1041-1028	1-7,1048-1042[UP5]	((((((((((((((.......&.......))))))))))))))	CAGAAUAGAGUUGAAGGUGAG&GAAAAUAUUAAUUCUAUUUUG	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN4394_c0_g1_1039_TPlot.pdf
TRINITY_DN4394_c0_g1:1136	si_s780	TRINITY_DN4394_c0_g1	1122	1145	1136	-30.50	-21.58	0.707540983606557	13	1-12,1145-1134;17-21,1126-1122	13-16,1133-1127[AILt]	(((((.......((((((((((((&))))))))))))---....)))))	GAGCUGCAACCGUUGUAGCGAUGG&CUAUUGCUAUAA---AACAAGCUC	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s780_TRINITY_DN4394_c0_g1_1136_TPlot.pdf
TRINITY_DN4394_c0_g1:442	si_a503	TRINITY_DN4394_c0_g1	431	451	442	-32.10	-21.10	0.657320872274143	13.5	6-18,446-434	1-5,451-447[UP5];19-21,433-431[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUGUCCGAGGAAGAUGCAACG&UUUUUCGUCUUCCUUGGAAUG	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN4394_c0_g1_442_TPlot.pdf
TRINITY_DN4394_c0_g1:445	si_a500	TRINITY_DN4394_c0_g1	434	452	445	-34.40	-24.70	0.718023255813954	7.5	1-5,452-448;9-21,446-434	6-8,447-447[AILq]	(((((((((((((.--(((((&)))))...)))))))))))))	UCCGAGGAAGAUGC--AACGA&UCGUUUUUCGUCUUCCUUGGA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN4394_c0_g1_445_TPlot.pdf
TRINITY_DN4394_c0_g1:596	si_s342	TRINITY_DN4394_c0_g1	585	606	596	-35.40	-23.20	0.655367231638418	8.5	1-7,606-600;8-16,598-590	x-x,599-599[BULt];17-21,589-585[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	UGAACUGUCUUCCCGGUGAAUC&GAUUCAC-GGGGAGAUAAAGAA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s342_TRINITY_DN4394_c0_g1_596_TPlot.pdf
TRINITY_DN4394_c0_g1:600	si_s339	TRINITY_DN4394_c0_g1	588	609	600	-35.40	-23.50	0.663841807909605	10	4-10,606-600;11-19,598-590	1-3,609-607[UP5];x-x,599-599[BULt];20-21,589-588[UP3]	..(((((((((.(((((((...&...)))))))-)))))))))..	ACUGUCUUCCCGGUGAAUCCAU&UACGAUUCAC-GGGGAGAUAAA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s339_TRINITY_DN4394_c0_g1_600_TPlot.pdf
TRINITY_DN4394_c0_g1:601	si_s338	TRINITY_DN4394_c0_g1	589	610	601	-35.60	-23.50	0.660112359550562	11	5-11,606-600;12-20,598-590	1-4,610-607[UP5];x-x,599-599[BULt];21-21,589-589[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	CUGUCUUCCCGGUGAAUCCAUC&AUACGAUUCAC-GGGGAGAUAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s338_TRINITY_DN4394_c0_g1_601_TPlot.pdf
TRINITY_DN4396_c0_g1:2216	si_a402	TRINITY_DN4396_c0_g1	2205	2226	2216	-22.40	-14.70	0.65625	8.5	1-5,2226-2222;6-16,2220-2210	x-x,2221-2221[BULt];17-21,2209-2205[UP3]	.....(((((((((((.(((((&)))))-))))))))))).....	CCAAAAGACAAGACAAUUUCUA&UAGAA-UUGUUUUGUUUAUAUU	2	0.999999988239276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN4396_c0_g1_2216_TPlot.pdf
TRINITY_DN4396_c0_g1:2220	si_a398	TRINITY_DN4396_c0_g1	2209	2230	2220	-22.40	-14.70	0.65625	11	5-9,2226-2222;10-20,2220-2210	1-4,2230-2227[UP5];x-x,2221-2221[BULt];21-21,2209-2209[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	AAGACAAGACAAUUUCUACACC&AAUAUAGAA-UUGUUUUGUUUA	2	0.999999616366691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4396_c0_g1_2220_TPlot.pdf
TRINITY_DN4396_c0_g2:2766	si_s801	TRINITY_DN4396_c0_g2	2755	2776	2766	-28.20	-18.60	0.659574468085106	6.5	1-4,2776-2773;5-15,2771-2761;18-19,2758-2757	x-x,2772-2772[BULt];16-17,2760-2759[SIL];20-21,2756-2755[UP3]	..((..(((((((((((.((((&))))-)))))))))))..))..	UUGGGGAUGAAGAUAAACAUAC&GUAU-UUUAUCUUCGUUACCUU	2	0.999892225905947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN4396_c0_g2_2766_TPlot.pdf
TRINITY_DN4396_c0_g2:3203	si_a405	TRINITY_DN4396_c0_g2	3192	3212	3203	-19.80	-15.00	0.757575757575758	6.5	1-13,3212-3200;15-19,3198-3194	14-14,3199-3199[SIL];20-21,3193-3192[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UCGAGUGGAAACAAGACAGUU&AAUUGUUUUGUUUAUAUUUAA	4	0.999920005932043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4396_c0_g2_3203_TPlot.pdf
TRINITY_DN43983_c0_g1:33	si_s798	TRINITY_DN43983_c0_g1	22	41	33	-29.30	-20.00	0.68259385665529	5	1-4,41-38;6-20,37-23	5-5,x-x[BULq];21-21,22-22[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	UUGAUGAAGAUAAAAU-UGAG&CUCGUAUUUUAUCUUCGUUAC	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN43983_c0_g1_33_TPlot.pdf
TRINITY_DN43990_c0_g1:77	si_s59	TRINITY_DN43990_c0_g1	63	86	77	-29.20	-19.70	0.674657534246575	9	1-10,86-77;13-14,74-73;15-20,69-64	11-12,76-75[SIL];x-x,72-70[BULt];21-21,63-63[UP3]	.((((((...((..((((((((((&))))))))))..))---)))))).	UAAUAGAACAAGGAGCUGACUUGA&UCAAGUUAGCAACU---UCUAUUU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN43990_c0_g1_77_TPlot.pdf
TRINITY_DN4399_c0_g1:230	si_s633	TRINITY_DN4399_c0_g1	220	239	230	-37.90	-24.70	0.651715039577836	8	1-7,239-233;10-13,230-227;16-21,225-220	8-9,232-231[SIL];14-15,226-226[AILq]	((((((.-((((..(((((((&)))))))..))))..))))))	AGGGCAU-CGUCGUCGAGAAG&CUUUUCGUAGGCGUUUGCCCU	4	0.999995644759389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN4399_c0_g1_230_TPlot.pdf
TRINITY_DN4399_c0_g1:236	si_a637	TRINITY_DN4399_c0_g1	225	245	236	-25.80	-16.80	0.651162790697674	12	1-14,245-232	15-21,231-225[UP3]	.......((((((((((((((&)))))))))))))).......	AUCGUCGUCGAGAAGGUCGGC&GUCGAUUUUUUUGAGUAAUAU	2	0.999999931137027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4399_c0_g1_236_TPlot.pdf
TRINITY_DN4399_c0_g1:237	si_a636	TRINITY_DN4399_c0_g1	226	246	237	-26.30	-17.60	0.669201520912548	10.5	1-15,246-232	16-21,231-226[UP3]	......(((((((((((((((&)))))))))))))))......	UCGUCGUCGAGAAGGUCGGCA&UGUCGAUUUUUUUGAGUAAUA	2	0.999975186403413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4399_c0_g1_237_TPlot.pdf
TRINITY_DN4399_c0_g1:238	si_a635	TRINITY_DN4399_c0_g1	227	247	238	-26.10	-18.60	0.71264367816092	9.5	1-16,247-232	17-21,231-227[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGUCGUCGAGAAGGUCGGCAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4399_c0_g1_238_TPlot.pdf
TRINITY_DN4399_c0_g1:239	si_a634	TRINITY_DN4399_c0_g1	228	248	239	-26.40	-18.60	0.704545454545455	9	2-17,247-232	1-1,248-248[UP5];18-21,231-228[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUCGUCGAGAAGGUCGGCAUC&UAUGUCGAUUUUUUUGAGUAA	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4399_c0_g1_239_TPlot.pdf
TRINITY_DN4399_c0_g1:241	si_a632	TRINITY_DN4399_c0_g1	230	250	241	-26.10	-18.60	0.71264367816092	11	4-19,247-232	1-3,250-248[UP5];20-21,231-230[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGUCGAGAAGGUCGGCAUCGA&AUUAUGUCGAUUUUUUUGAGU	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4399_c0_g1_241_TPlot.pdf
TRINITY_DN4399_c0_g1:242	si_a631	TRINITY_DN4399_c0_g1	231	251	242	-25.70	-18.60	0.723735408560311	11.5	5-20,247-232	1-4,251-248[UP5];21-21,231-231[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUCGAGAAGGUCGGCAUCGAA&UAUUAUGUCGAUUUUUUUGAG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4399_c0_g1_242_TPlot.pdf
TRINITY_DN4399_c0_g1:243	si_a630	TRINITY_DN4399_c0_g1	232	252	243	-25.80	-18.40	0.713178294573643	12	6-21,247-232	1-5,252-248[UP5]	((((((((((((((((.....&.....))))))))))))))))	UCGAGAAGGUCGGCAUCGAAG&GUAUUAUGUCGAUUUUUUUGA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN4399_c0_g1_243_TPlot.pdf
TRINITY_DN4399_c0_g1:391	si_a287	TRINITY_DN4399_c0_g1	380	400	391	-29.20	-19.70	0.674657534246575	11	1-15,400-386	16-21,385-380[UP3]	......(((((((((((((((&)))))))))))))))......	GGUGUCUGGGUUCGGGCGAUC&GAUCGCUUGGAUUUAAAAAAG	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN4399_c0_g1_391_TPlot.pdf
TRINITY_DN4399_c0_g1:392	si_a286	TRINITY_DN4399_c0_g1	381	401	392	-28.30	-19.70	0.696113074204947	10.5	2-16,400-386	1-1,401-401[UP5];17-21,385-381[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GUGUCUGGGUUCGGGCGAUCG&AGAUCGCUUGGAUUUAAAAAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN4399_c0_g1_392_TPlot.pdf
TRINITY_DN4399_c0_g1:393	si_a285	TRINITY_DN4399_c0_g1	382	402	393	-28.30	-19.70	0.696113074204947	11.5	3-17,400-386	1-2,402-401[UP5];18-21,385-382[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGUCUGGGUUCGGGCGAUCGG&AAGAUCGCUUGGAUUUAAAAA	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN4399_c0_g1_393_TPlot.pdf
TRINITY_DN4399_c0_g1:394	si_a284	TRINITY_DN4399_c0_g1	383	403	394	-28.30	-19.70	0.696113074204947	12	4-18,400-386	1-3,403-401[UP5];19-21,385-383[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUCUGGGUUCGGGCGAUCGGG&AAAGAUCGCUUGGAUUUAAAA	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN4399_c0_g1_394_TPlot.pdf
TRINITY_DN4399_c0_g1:396	si_a282	TRINITY_DN4399_c0_g1	385	405	396	-30.30	-19.70	0.65016501650165	13.5	6-20,400-386	1-5,405-401[UP5];21-21,385-385[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUGGGUUCGGGCGAUCGGGAC&GAAAAGAUCGCUUGGAUUUAA	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN4399_c0_g1_396_TPlot.pdf
TRINITY_DN4399_c0_g1:431	si_a646	TRINITY_DN4399_c0_g1	420	440	431	-29.40	-20.20	0.687074829931973	9.5	2-7,439-434;10-20,431-421	1-1,440-440[UP5];8-9,433-432[SIL];21-21,420-420[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	AUUCCCGGUGUGAGAUUCAAG&UUUGAGUAAUAUAUCGGGAAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN4399_c0_g1_431_TPlot.pdf
TRINITY_DN4399_c0_g1:432	si_a645	TRINITY_DN4399_c0_g1	421	441	432	-29.40	-21.50	0.731292517006803	8	1-8,441-434;11-21,431-421	9-10,433-432[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	UUCCCGGUGUGAGAUUCAAGA&UUUUGAGUAAUAUAUCGGGAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN4399_c0_g1_432_TPlot.pdf
TRINITY_DN4399_c0_g1:433	si_a644	TRINITY_DN4399_c0_g1	422	442	433	-29.30	-20.90	0.713310580204778	9	2-9,441-434;12-21,431-422	1-1,442-442[UP5];10-11,433-432[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	UCCCGGUGUGAGAUUCAAGAU&UUUUUGAGUAAUAUAUCGGGA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN4399_c0_g1_433_TPlot.pdf
TRINITY_DN4399_c0_g1:434	si_a643	TRINITY_DN4399_c0_g1	423	443	434	-28.30	-18.80	0.664310954063604	10.5	3-10,441-434;13-21,431-423	1-2,443-442[UP5];11-12,433-432[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	CCCGGUGUGAGAUUCAAGAUC&UUUUUUGAGUAAUAUAUCGGG	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN4399_c0_g1_434_TPlot.pdf
TRINITY_DN4399_c0_g1:490	si_s82	TRINITY_DN4399_c0_g1	480	499	490	-28.90	-19.00	0.657439446366782	10.5	5-11,495-489;13-21,488-480	1-4,499-496[UP5];12-12,x-x[BULq]	(((((((((-(((((((....&....))))))).)))))))))	AAGGAGAAG-AAGGAGAAGCC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4399_c0_g1_490_TPlot.pdf
TRINITY_DN4399_c0_g1:72	si_s71	TRINITY_DN4399_c0_g1	61	81	72	-25.70	-18.80	0.731517509727627	8	1-18,81-64	19-21,63-61[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUUGAGGAAAAAGGAUGGGAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999995180967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4399_c0_g1_72_TPlot.pdf
TRINITY_DN4399_c0_g1:73	si_s70	TRINITY_DN4399_c0_g1	62	82	73	-25.80	-19.00	0.736434108527132	8	2-19,81-64	1-1,82-82[UP5];20-21,63-62[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUGAGGAAAAAGGAUGGGAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4399_c0_g1_73_TPlot.pdf
TRINITY_DN4399_c0_g1:75	si_s68	TRINITY_DN4399_c0_g1	64	84	75	-23.10	-19.00	0.822510822510822	10	4-21,81-64	1-3,84-82[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAGGAAAAAGGAUGGGAGGCA&CAACUUCUAUUUUUUUUCUUU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4399_c0_g1_75_TPlot.pdf
TRINITY_DN4399_c0_g1:76	si_s67	TRINITY_DN4399_c0_g1	65	83	76	-25.60	-18.30	0.71484375	8	1-2,83-82;5-21,81-65	3-4,x-x[BULq]	(((((((((((((((((--((&))..)))))))))))))))))	AGGAAAAAGGAUGGGAG--GC&GCAACUUCUAUUUUUUUUCUU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4399_c0_g1_76_TPlot.pdf
TRINITY_DN4399_c0_g1:77	si_s66	TRINITY_DN4399_c0_g1	66	84	77	-26.30	-17.60	0.669201520912548	8.5	2-3,83-82;6-21,81-66	1-1,84-84[UP5];4-5,x-x[BULq]	((((((((((((((((--((.&.))..))))))))))))))))	GGAAAAAGGAUGGGAG--GCA&AGCAACUUCUAUUUUUUUUCU	3	0.999999964960652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN4399_c0_g1_77_TPlot.pdf
TRINITY_DN439_c0_g1:1365	si_s63	TRINITY_DN439_c0_g1	1354	1375	1365	-25.80	-16.90	0.655038759689922	6	1-9,1375-1367;10-13,1365-1362;15-21,1360-1354	x-x,1366-1366[BULt];14-14,1361-1361[SIL]	(((((((.((((.(((((((((&)))))))))-)))).)))))))	AGAGAAGCAGGAUGUUGCUAAU&GUUAGCAAC-UUCUAUUUUUUU	3	0.999999989386956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN439_c0_g1_1365_TPlot.pdf
TRINITY_DN439_c0_g1:2225	si_a836	TRINITY_DN439_c0_g1	2214	2234	2225	-24.10	-16.30	0.676348547717842	16	8-18,2227-2217	1-7,2234-2228[UP5];19-21,2216-2214[UP3]	...(((((((((((.......&.......)))))))))))...	GCCGCAACUUCUAUACGGACU&AAAAAAAAUAGAAGUUGCUAA	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN439_c0_g1_2225_TPlot.pdf
TRINITY_DN439_c0_g1:2807	si_s804	TRINITY_DN439_c0_g1	2798	2816	2807	-27.90	-20.40	0.731182795698925	5.5	1-12,2816-2805;15-21,2804-2798	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	GAGAAGG--AUGAAGAUGAGA&UUUUAUCUUCGUUACCUUUUC	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN439_c0_g1_2807_TPlot.pdf
TRINITY_DN43_c0_g2:467	si_a327	TRINITY_DN43_c0_g2	455	476	467	-28.40	-20.10	0.707746478873239	9	1-6,476-471;9-11,468-466;13-21,463-455	7-8,470-469[SIL];12-12,465-464[AILt]	(((((((((..(((..((((((&))))))..)))-.)))))))))	GGACAAGGAUUUAGUUAAAUCA&UGAUUUUUUUA-UUCCUUGUCC	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN43_c0_g2_467_TPlot.pdf
TRINITY_DN43_c0_g7:686	si_s38	TRINITY_DN43_c0_g7	675	695	686	-22.70	-15.00	0.66079295154185	12	5-19,691-677	1-4,695-692[UP5];20-21,676-675[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUUCUGAUUGUUAGAGAAAUU&UAAAUCUUUAAUAAUUGGAUU	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN43_c0_g7_686_TPlot.pdf
TRINITY_DN44014_c0_g1:200	si_a144	TRINITY_DN44014_c0_g1	188	208	200	-27.40	-17.90	0.653284671532847	7	1-6,208-203;8-16,202-194;17-21,192-188	7-7,x-x[BULq];x-x,193-193[BULt]	(((((.(((((((((-((((((&)))))).)))))))))-)))))	CCUUGAAGACGACAA-GGUUGA&UUAAUCGUUGUUGUUU-UAAGG	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN44014_c0_g1_200_TPlot.pdf
TRINITY_DN44021_c0_g1:189	si_a726	TRINITY_DN44021_c0_g1	178	199	189	-39.00	-26.02	0.667179487179487	9	1-5,199-195;9-20,190-179	6-8,194-191[AILt];21-21,178-178[UP3]	.((((((((((((....(((((&)))))-...)))))))))))).	AGGUAAAGAUGCCGUCUGUAAC&GUUAC-UCGGGCAUCUUUACCC	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a726_TRINITY_DN44021_c0_g1_189_TPlot.pdf
TRINITY_DN44021_c0_g1:190	si_a725	TRINITY_DN44021_c0_g1	179	200	190	-38.10	-26.32	0.690813648293963	9	2-6,199-195;10-21,190-179	1-1,200-200[UP5];7-9,194-191[AILt]	((((((((((((....(((((.&.)))))-...))))))))))))	GGUAAAGAUGCCGUCUGUAACC&CGUUAC-UCGGGCAUCUUUACC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN44021_c0_g1_190_TPlot.pdf
TRINITY_DN4402_c3_g2:1883	si_s89	TRINITY_DN4402_c3_g2	1872	1892	1883	-35.30	-23.00	0.651558073654391	6.5	3-15,1890-1878;17-20,1876-1873	1-2,1892-1891[UP5];16-16,1877-1877[SIL];21-21,1872-1872[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AGAAGAGGAGAAGAAGAGACA&CCUUUCUUCUUCUUCGCUUCG	2	0.999999999996349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4402_c3_g2_1883_TPlot.pdf
TRINITY_DN4402_c3_g2:1888	si_s84	TRINITY_DN4402_c3_g2	1877	1898	1888	-32.30	-23.40	0.724458204334365	7.5	1-6,1898-1893;8-20,1890-1878	7-7,1892-1891[AILt];21-21,1877-1877[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AGGAGAAGAAGAGACAGAGAGA&UCUUUC-CUUUCUUCUUCUUCG	2	0.999893558965426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4402_c3_g2_1888_TPlot.pdf
TRINITY_DN4402_c3_g2:1911	si_s69	TRINITY_DN4402_c3_g2	1893	1920	1911	-23.40	-16.30	0.696581196581197	14.5	3-15,1918-1906;16-21,1898-1893	1-2,1920-1919[UP5];x-x,1905-1899[BULt]	((((((.......(((((((((((((..&..)))))))))))))-------))))))	GAGAGAAGAACACGAGAGAAUGGAGGAA&AACUUCUAUUUUUUU-------UCUUUC	2	0.999999999994563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4402_c3_g2_1911_TPlot.pdf
TRINITY_DN4405_c0_g1:812	si_a455	TRINITY_DN4405_c0_g1	801	821	812	-21.10	-14.80	0.701421800947867	7	1-9,821-813;11-18,811-804	10-10,812-812[SIL];19-21,803-801[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAUUUAUAUAUUGCAACGAUU&AAUUGUUGUUAUAUAUAAUAU	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN4405_c0_g1_812_TPlot.pdf
TRINITY_DN4406_c1_g1:759	si_s71	TRINITY_DN4406_c1_g1	745	768	759	-25.70	-17.00	0.66147859922179	10	1-10,768-759;11-16,755-750;18-21,748-745	x-x,758-756[BULt];17-17,749-749[SIL]	((((.((((((...((((((((((&))))))))))---)))))).))))	AGGGCAGGAGACCCAAAAUGGAAG&CUUCUAUUUU---UUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4406_c1_g1_759_TPlot.pdf
TRINITY_DN4408_c0_g1:1222	si_a421	TRINITY_DN4408_c0_g1	1211	1231	1222	-26.40	-17.80	0.674242424242424	7.5	1-9,1231-1223;11-14,1221-1218;16-20,1216-1212	10-10,1222-1222[SIL];15-15,1217-1217[SIL];21-21,1211-1211[UP3]	.(((((.((((.(((((((((&))))))))).)))).))))).	UGGAUCGUGUACUUGUUUGGA&UUUAAAUAAAUAUAGGAUCCG	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN4408_c0_g1_1222_TPlot.pdf
TRINITY_DN4408_c0_g1:1223	si_a420	TRINITY_DN4408_c0_g1	1212	1232	1223	-25.00	-17.10	0.684	7.5	2-10,1231-1223;12-15,1221-1218;17-21,1216-1212	1-1,1232-1232[UP5];11-11,1222-1222[SIL];16-16,1217-1217[SIL]	(((((.((((.(((((((((.&.))))))))).)))).)))))	GGAUCGUGUACUUGUUUGGAC&AUUUAAAUAAAUAUAGGAUCC	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN4408_c0_g1_1223_TPlot.pdf
TRINITY_DN4408_c0_g1:1353	si_a350	TRINITY_DN4408_c0_g1	1342	1363	1353	-20.30	-13.70	0.67487684729064	11.5	5-9,1359-1355;10-21,1353-1342	1-4,1363-1360[UP5];x-x,1354-1354[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	UCAAAGUAGAGUGUAAUGGUGA&AAAAUAUUA-AUUCUAUUUUGA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN4408_c0_g1_1353_TPlot.pdf
TRINITY_DN4408_c0_g1:1366	si_s3	TRINITY_DN4408_c0_g1	1353	1375	1366	-21.20	-14.30	0.674528301886792	11	3-11,1373-1365;12-20,1362-1354	1-2,1375-1374[UP5];x-x,1364-1363[BULt];21-21,1353-1353[UP3]	.(((((((((..(((((((((..&..)))))))))--))))))))).	UGUAAUGGUGAAAGUGAUAUACG&UUUAUAUUACU--UAUUAUUACU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN4408_c0_g1_1366_TPlot.pdf
TRINITY_DN4408_c0_g1:1600	si_s494	TRINITY_DN4408_c0_g1	1590	1609	1600	-19.80	-13.10	0.661616161616162	7	1-11,1609-1599;13-18,1598-1593	12-12,x-x[BULq];19-21,1592-1590[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GAGGUUUUG-UUAUAUUUGGA&UUUAAAUAUAAACAAAACAAU	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN4408_c0_g1_1600_TPlot.pdf
TRINITY_DN4408_c0_g1:1601	si_s493	TRINITY_DN4408_c0_g1	1591	1610	1601	-19.80	-14.40	0.727272727272727	5	1-12,1610-1599;14-19,1598-1593	13-13,x-x[BULq];20-21,1592-1591[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	AGGUUUUG-UUAUAUUUGGAU&AUUUAAAUAUAAACAAAACAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN4408_c0_g1_1601_TPlot.pdf
TRINITY_DN4408_c0_g1:1603	si_s491	TRINITY_DN4408_c0_g1	1593	1612	1603	-19.50	-14.90	0.764102564102564	5	2-14,1611-1599;16-21,1598-1593	1-1,1612-1612[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	GUUUUG-UUAUAUUUGGAUGC&UUAUUUAAAUAUAAACAAAAC	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN4408_c0_g1_1603_TPlot.pdf
TRINITY_DN4408_c0_g1:1604	si_s490	TRINITY_DN4408_c0_g1	1594	1613	1604	-17.80	-11.80	0.662921348314607	7	3-15,1611-1599;17-21,1598-1594	1-2,1613-1612[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	UUUUG-UUAUAUUUGGAUGCU&UUUAUUUAAAUAUAAACAAAA	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN4408_c0_g1_1604_TPlot.pdf
TRINITY_DN4408_c0_g1:2353	si_a20	TRINITY_DN4408_c0_g1	2342	2362	2353	-26.70	-19.70	0.737827715355805	9	1-3,2362-2360;6-20,2357-2343	4-5,2359-2358[SIL];21-21,2342-2342[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	AAGGACUGAAAGUGAGAUGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4408_c0_g1_2353_TPlot.pdf
TRINITY_DN4408_c0_g1:2354	si_a19	TRINITY_DN4408_c0_g1	2343	2363	2354	-27.00	-19.60	0.725925925925926	9	2-4,2362-2360;7-21,2357-2343	1-1,2363-2363[UP5];5-6,2359-2358[SIL]	(((((((((((((((..(((.&.)))..)))))))))))))))	AGGACUGAAAGUGAGAUGGCC&AGCCUAUUUAUUUUUAGUUCU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4408_c0_g1_2354_TPlot.pdf
TRINITY_DN4408_c0_g1:2355	si_a18	TRINITY_DN4408_c0_g1	2344	2364	2355	-26.30	-18.30	0.695817490494297	11	3-5,2362-2360;8-21,2357-2344	1-2,2364-2363[UP5];6-7,2359-2358[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	GGACUGAAAGUGAGAUGGCCA&AAGCCUAUUUAUUUUUAGUUC	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN4408_c0_g1_2355_TPlot.pdf
TRINITY_DN4409_c0_g1:2094	si_s771	TRINITY_DN4409_c0_g1	2083	2104	2094	-25.20	-18.40	0.73015873015873	5.5	1-3,2104-2102;5-12,2099-2092;14-21,2090-2083	4-4,2101-2100[AILt];13-13,2091-2091[SIL]	((((((((.((((((((..(((&)))-.)))))))).))))))))	UUAUGGCAUUAGUAAUUUUAUC&GAU-UAAUUACUAUUGCUAUAA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN4409_c0_g1_2094_TPlot.pdf
TRINITY_DN4409_c0_g1:2095	si_s770	TRINITY_DN4409_c0_g1	2084	2105	2095	-26.60	-19.10	0.718045112781955	5.5	1-4,2105-2102;6-13,2099-2092;15-21,2090-2084	5-5,2101-2100[AILt];14-14,2091-2091[SIL]	(((((((.((((((((..((((&))))-.)))))))).)))))))	UAUGGCAUUAGUAAUUUUAUCG&CGAU-UAAUUACUAUUGCUAUA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN4409_c0_g1_2095_TPlot.pdf
TRINITY_DN4409_c0_g1:2096	si_s769	TRINITY_DN4409_c0_g1	2085	2106	2096	-27.00	-18.20	0.674074074074074	6.5	2-5,2105-2102;7-14,2099-2092;16-21,2090-2085	1-1,2106-2106[UP5];6-6,2101-2100[AILt];15-15,2091-2091[SIL]	((((((.((((((((..((((.&.))))-.)))))))).))))))	AUGGCAUUAGUAAUUUUAUCGC&ACGAU-UAAUUACUAUUGCUAU	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN4409_c0_g1_2096_TPlot.pdf
TRINITY_DN4411_c0_g1:353	si_a349	TRINITY_DN4411_c0_g1	342	362	353	-21.30	-14.10	0.661971830985915	3.5	1-12,362-351;14-18,350-346;20-21,343-342	13-13,x-x[BULq];19-19,345-344[AILt]	((..(((((-((((((((((((&)))))))))))).)))))-.))	CACUGAUAG-AUUAAUAUUUUC&GAAAAUAUUAAUUCUAUU-UUG	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN4411_c0_g1_353_TPlot.pdf
TRINITY_DN4411_c1_g1:2216	si_a783	TRINITY_DN4411_c1_g1	2198	2225	2216	-24.70	-17.50	0.708502024291498	13.5	3-13,2223-2213;14-21,2205-2198	1-2,2225-2224[UP5];x-x,2212-2206[BULt]	((((((((.......(((((((((((..&..)))))))))))-------))))))))	AAAUAGAACUGCGUUGAGUGGAGGAGGU&AACUCUUCUAUUU-------UUCUAUUU	4	0.999999747732611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4411_c1_g1_2216_TPlot.pdf
TRINITY_DN4411_c4_g1:134	si_s662	TRINITY_DN4411_c4_g1	123	142	134	-35.40	-23.10	0.652542372881356	8.5	3-8,140-135;10-19,134-125	1-2,142-141[UP5];9-9,x-x[BULq];20-21,124-123[UP3]	..((((((((((-((((((..&..)))))).))))))))))..	AAGAUCAAUUCG-UCCCUCCA&UCGGGGGAUCGAAUUGAUUAU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN4411_c4_g1_134_TPlot.pdf
TRINITY_DN4412_c0_g1:1009	si_a636	TRINITY_DN4412_c0_g1	998	1027	1009	-26.30	-17.30	0.657794676806084	24.5	2-7,1026-1021;8-21,1011-998	1-1,1027-1027[UP5];x-x,1020-1012[BULt]	((((((((((((((.........((((((.&.))))))---------))))))))))))))	UGUUGCUUAGAGGAGCUUGUAUAGUCGACG&UGUCGAU---------UUUUUUGAGUAAUA	4	0.999999999930368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4412_c0_g1_1009_TPlot.pdf
TRINITY_DN4412_c0_g1:159	si_s359	TRINITY_DN4412_c0_g1	147	168	159	-32.20	-22.00	0.683229813664596	5.5	2-6,167-163;8-18,161-151;19-21,149-147	1-1,168-168[UP5];7-7,162-162[SIL];x-x,150-150[BULt]	(((.(((((((((((.(((((.&.))))).)))))))))))-)))	CGACUUGGUUCAAUCAGUUUCA&AGAAAUAGAUUGAACCGA-UCG	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s359_TRINITY_DN4412_c0_g1_159_TPlot.pdf
TRINITY_DN4412_c0_g1:163	si_s355	TRINITY_DN4412_c0_g1	152	172	163	-28.10	-18.50	0.658362989323843	6.5	1-4,172-169;6-10,167-163;12-21,161-152	5-5,168-168[SIL];11-11,162-162[SIL]	((((((((((.(((((.((((&)))).))))).))))))))))	UGGUUCAAUCAGUUUCAUUGU&AUAAAGAAAUAGAUUGAACCG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s355_TRINITY_DN4412_c0_g1_163_TPlot.pdf
TRINITY_DN4412_c0_g1:3124	si_s208	TRINITY_DN4412_c0_g1	3109	3133	3124	-34.50	-23.90	0.692753623188406	12	1-11,3133-3123;12-17,3118-3113	x-x,3122-3119[BULt];18-21,3112-3109[UP3]	....((((((....(((((((((((&)))))))))))----))))))....	CUACCGAACAUAUUCAACUGGUACA&UGUACCAGUUG----UGUUCGAAAC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN4412_c0_g1_3124_TPlot.pdf
TRINITY_DN4412_c0_g1:3127	si_s205	TRINITY_DN4412_c0_g1	3112	3136	3127	-34.90	-23.90	0.684813753581662	10	4-14,3133-3123;15-20,3118-3113	1-3,3136-3134[UP5];x-x,3122-3119[BULt];21-21,3112-3112[UP3]	.((((((....(((((((((((...&...)))))))))))----)))))).	CCGAACAUAUUCAACUGGUACACAA&GAAUGUACCAGUUG----UGUUCGA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN4412_c0_g1_3127_TPlot.pdf
TRINITY_DN4412_c0_g1:3724	si_s324	TRINITY_DN4412_c0_g1	3712	3733	3724	-28.70	-19.30	0.672473867595819	7	1-3,3733-3731;6-18,3728-3716;19-21,3714-3712	4-5,3730-3729[SIL];x-x,3715-3715[BULt]	(((.(((((((((((((..(((&)))..)))))))))))))-)))	AUCUGUAUGUUUGUGAUUUGAA&UUCUUGUUACAAACAUAC-GAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s324_TRINITY_DN4412_c0_g1_3724_TPlot.pdf
TRINITY_DN4413_c0_g1:313	si_s76	TRINITY_DN4413_c0_g1	301	322	313	-23.60	-16.50	0.699152542372881	8.5	2-12,321-311;14-21,308-301	1-1,322-322[UP5];13-13,310-309[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	AAGAAGGGCCAAGAAGAGGAGG&AUUUUUUUUCUU-UCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4413_c0_g1_313_TPlot.pdf
TRINITY_DN4413_c0_g1:315	si_s898	TRINITY_DN4413_c0_g1	304	324	315	-30.70	-20.90	0.680781758957655	11	1-12,324-313	13-21,312-304[UP3]	.........((((((((((((&)))))))))))).........	AAGGGCCAAGAAGAGGAGGCC&GGCUUUCUCUUCAAUUUCAAU	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4413_c0_g1_315_TPlot.pdf
TRINITY_DN4413_c0_g1:316	si_s897	TRINITY_DN4413_c0_g1	305	325	316	-31.30	-21.00	0.670926517571885	11	2-13,324-313	1-1,325-325[UP5];14-21,312-305[UP3]	........((((((((((((.&.))))))))))))........	AGGGCCAAGAAGAGGAGGCCA&AGGCUUUCUCUUCAAUUUCAA	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN4413_c0_g1_316_TPlot.pdf
TRINITY_DN4413_c0_g1:318	si_s895	TRINITY_DN4413_c0_g1	307	327	318	-31.10	-21.00	0.67524115755627	13	4-15,324-313	1-3,327-325[UP5];16-21,312-307[UP3]	......((((((((((((...&...))))))))))))......	GGCCAAGAAGAGGAGGCCACU&AUAGGCUUUCUCUUCAAUUUC	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4413_c0_g1_318_TPlot.pdf
TRINITY_DN4413_c0_g1:322	si_s891	TRINITY_DN4413_c0_g1	311	331	322	-29.60	-21.00	0.709459459459459	16.5	8-19,324-313	1-7,331-325[UP5];20-21,312-311[UP3]	..((((((((((((.......&.......))))))))))))..	AAGAAGAGGAGGCCACUAAAA&AUAAAUAGGCUUUCUCUUCAA	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4413_c0_g1_322_TPlot.pdf
TRINITY_DN4413_c0_g1:323	si_s890	TRINITY_DN4413_c0_g1	312	332	323	-29.50	-21.00	0.711864406779661	17.5	9-20,324-313	1-8,332-325[UP5];21-21,312-312[UP3]	.((((((((((((........&........)))))))))))).	AGAAGAGGAGGCCACUAAAAA&AAUAAAUAGGCUUUCUCUUCA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4413_c0_g1_323_TPlot.pdf
TRINITY_DN4413_c0_g1:609	si_a665	TRINITY_DN4413_c0_g1	598	617	609	-29.60	-19.60	0.662162162162162	10.5	4-7,614-611;9-18,610-601	1-3,617-615[UP5];8-8,x-x[BULq];19-21,600-598[UP3]	...((((((((((-((((...&...)))).))))))))))...	UAAGAGGAAUCAA-AGGCCAG&AAUGCCUAUUGAUUCCUUAUU	2	0.997609809439789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN4413_c0_g1_609_TPlot.pdf
TRINITY_DN4413_c0_g1:610	si_a664	TRINITY_DN4413_c0_g1	599	618	610	-29.60	-19.60	0.662162162162162	11.5	5-8,614-611;10-19,610-601	1-4,618-615[UP5];9-9,x-x[BULq];20-21,600-599[UP3]	..((((((((((-((((....&....)))).))))))))))..	AAGAGGAAUCAA-AGGCCAGA&AAAUGCCUAUUGAUUCCUUAU	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN4413_c0_g1_610_TPlot.pdf
TRINITY_DN4413_c0_g1:628	si_a761	TRINITY_DN4413_c0_g1	617	637	628	-30.10	-19.80	0.6578073089701	10.5	1-13,637-625	14-21,624-617[UP3]	........(((((((((((((&)))))))))))))........	GAAGUAAGGAAAGCCCAGAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.999999999685771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4413_c0_g1_628_TPlot.pdf
TRINITY_DN4416_c0_g1:1806	si_s236	TRINITY_DN4416_c0_g1	1794	1815	1806	-29.60	-20.42	0.689864864864865	9.5	2-11,1814-1805;15-21,1800-1794	1-1,1815-1815[UP5];12-14,1804-1801[AILt]	(((((((....((((((((((.&.))))))))))-...)))))))	AAGUGCCGUCCUGGUUCCUUGA&AUAAGGAAUCA-AUAGGCAUUU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN4416_c0_g1_1806_TPlot.pdf
TRINITY_DN4416_c0_g1:1884	si_s76	TRINITY_DN4416_c0_g1	1873	1893	1884	-23.60	-19.00	0.805084745762712	11.5	4-20,1890-1874	1-3,1893-1891[UP5];21-21,1873-1873[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAGAGGGGGAGGAAGAGGCAA&AUUUUUUUUCUUUCCUUUCUU	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4416_c0_g1_1884_TPlot.pdf
TRINITY_DN4417_c0_g1:2026	si_s444	TRINITY_DN4417_c0_g1	2015	2034	2026	-22.80	-15.10	0.662280701754386	5	1-7,2034-2028;9-13,2027-2023;15-21,2021-2015	8-8,x-x[BULq];14-14,2022-2022[SIL]	(((((((.(((((-(((((((&))))))).))))).)))))))	AUUGUUGAUGUAU-UGAUAUG&CAUAUUAUAUAUAACAACAAU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN4417_c0_g1_2026_TPlot.pdf
TRINITY_DN4418_c0_g1:108	si_a749	TRINITY_DN4418_c0_g1	96	117	108	-42.10	-28.00	0.665083135391924	10.5	2-7,116-111;10-10,108-108;11-20,106-97	1-1,117-117[UP5];8-9,110-109[SIL];x-x,107-107[BULt];21-21,96-96[UP3]	.((((((((((.(..((((((.&.))))))..)-)))))))))).	UCCCAAGGGAGUGGCCGUGGUG&GGCCAUGAAC-CUCCUUUGGGU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN4418_c0_g1_108_TPlot.pdf
TRINITY_DN4418_c0_g1:2216	si_a764	TRINITY_DN4418_c0_g1	2202	2225	2216	-28.90	-19.92	0.689273356401384	13.5	1-11,2225-2215;14-19,2209-2204	12-13,2214-2210[AILt];20-21,2203-2202[UP3]	..((((((.....(((((((((((&)))))))))))---..))))))..	UCGAAUCGUCCUGCGAAAGCCCAA&UUGGGUUUUUG---AUUGAUUCAA	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN4418_c0_g1_2216_TPlot.pdf
TRINITY_DN4418_c0_g1:2218	si_a762	TRINITY_DN4418_c0_g1	2204	2227	2218	-29.70	-19.62	0.660606060606061	10.5	3-13,2225-2215;16-21,2209-2204	1-2,2227-2226[UP5];14-15,2214-2210[AILt]	((((((.....(((((((((((..&..)))))))))))---..))))))	GAAUCGUCCUGCGAAAGCCCAACG&CUUUGGGUUUUUG---AUUGAUUC	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN4418_c0_g1_2218_TPlot.pdf
TRINITY_DN4418_c0_g1:2341	si_s699	TRINITY_DN4418_c0_g1	2330	2350	2341	-28.60	-18.90	0.660839160839161	9	4-14,2347-2337;16-19,2335-2332	1-3,2350-2348[UP5];15-15,2336-2336[SIL];20-21,2331-2330[UP3]	..((((.(((((((((((...&...))))))))))).))))..	AAUCACCAAUGAAUCGACAAA&UUAGUCGAUUUAUUAGUGAAC	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN4418_c0_g1_2341_TPlot.pdf
TRINITY_DN4418_c0_g1:2342	si_s698	TRINITY_DN4418_c0_g1	2331	2351	2342	-27.00	-18.90	0.7	10	5-15,2347-2337;17-20,2335-2332	1-4,2351-2348[UP5];16-16,2336-2336[SIL];21-21,2331-2331[UP3]	.((((.(((((((((((....&....))))))))))).)))).	AUCACCAAUGAAUCGACAAAU&AUUAGUCGAUUUAUUAGUGAA	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN4418_c0_g1_2342_TPlot.pdf
TRINITY_DN4418_c0_g1:2343	si_s697	TRINITY_DN4418_c0_g1	2332	2352	2343	-26.90	-18.70	0.695167286245353	10.5	6-16,2347-2337;18-21,2335-2332	1-5,2352-2348[UP5];17-17,2336-2336[SIL]	((((.(((((((((((.....&.....))))))))))).))))	UCACCAAUGAAUCGACAAAUA&AAUUAGUCGAUUUAUUAGUGA	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN4418_c0_g1_2343_TPlot.pdf
TRINITY_DN4418_c0_g1:97	si_a511	TRINITY_DN4418_c0_g1	86	106	97	-38.40	-27.10	0.705729166666667	6	1-9,106-98;11-13,96-94;15-20,92-87	10-10,97-97[SIL];14-14,93-93[SIL];21-21,86-86[UP3]	.((((((.(((.(((((((((&))))))))).))).)))))).	GCGCCUUCCGUCCCAAGGGAG&CUUCCUUGGAAUGUAAGGCGG	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN4418_c0_g1_97_TPlot.pdf
TRINITY_DN4419_c1_g1:1567	si_s387	TRINITY_DN4419_c1_g1	1555	1578	1567	-39.50	-25.80	0.653164556962025	12	1-7,1578-1572;9-11,1568-1566;14-20,1562-1556	8-8,1571-1569[AILt];12-13,1565-1563[AILt];21-21,1555-1555[UP3]	.(((((((...(((...(((((((&)))))))--.)))-..))))))).	ACCUUGGACACGUACCCGGCGGAC&GUCCGCC--UUAC-AUUCCAAGGA	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN4419_c1_g1_1567_TPlot.pdf
TRINITY_DN4419_c1_g1:926	si_s783	TRINITY_DN4419_c1_g1	915	937	926	-31.00	-20.44	0.659354838709677	16	1-7,937-931;12-21,924-915	8-11,930-925[AILt]	((((((((((......(((((((&)))))))--....))))))))))	UAUGGGCUUGGAGAAGGUGGCGA&UUGCUAU--AAAACAAGCUCGUA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s783_TRINITY_DN4419_c1_g1_926_TPlot.pdf
TRINITY_DN4419_c1_g1:927	si_s782	TRINITY_DN4419_c1_g1	916	938	927	-30.70	-20.34	0.662540716612378	16	1-8,938-931;13-21,924-916	9-12,930-925[AILt]	(((((((((......((((((((&))))))))--....)))))))))	AUGGGCUUGGAGAAGGUGGCGAU&AUUGCUAU--AAAACAAGCUCGU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s782_TRINITY_DN4419_c1_g1_927_TPlot.pdf
TRINITY_DN4419_c1_g1:929	si_s811	TRINITY_DN4419_c1_g1	918	938	929	-26.40	-19.90	0.753787878787879	10.5	2-15,937-924	1-1,938-938[UP5];16-21,923-918[UP3]	......((((((((((((((.&.))))))))))))))......	GGGCUUGGAGAAGGUGGCGAU&UUCGUUACCUUUUCUUAAUAA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4419_c1_g1_929_TPlot.pdf
TRINITY_DN4419_c1_g1:932	si_s808	TRINITY_DN4419_c1_g1	921	941	932	-28.60	-19.90	0.695804195804196	13	5-18,937-924	1-4,941-938[UP5];19-21,923-921[UP3]	...((((((((((((((....&....))))))))))))))...	CUUGGAGAAGGUGGCGAUAAG&AUCUUCGUUACCUUUUCUUAA	4	0.999992852258198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN4419_c1_g1_932_TPlot.pdf
TRINITY_DN4419_c1_g1:936	si_s804	TRINITY_DN4419_c1_g1	925	945	936	-27.90	-18.80	0.673835125448029	17	9-21,937-925	1-8,945-938[UP5]	(((((((((((((........&........)))))))))))))	GAGAAGGUGGCGAUAAGCUUC&UUUUAUCUUCGUUACCUUUUC	4	0.999999997672781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4419_c1_g1_936_TPlot.pdf
TRINITY_DN4419_c1_g1:974	si_a779	TRINITY_DN4419_c1_g1	962	984	974	-27.00	-18.20	0.674074074074074	7.5	2-9,983-976;10-11,974-973;12-20,971-963	1-1,984-984[UP5];x-x,975-975[BULt];x-x,972-972[BULt];21-21,962-962[UP3]	.(((((((((.((.((((((((.&.))))))))-))-))))))))).	CGAAAGGUGGCAACGAGUUGAAA&AUUCAACUC-UU-CUAUUUUUCU	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN4419_c1_g1_974_TPlot.pdf
TRINITY_DN441_c0_g1:1372	si_a90	TRINITY_DN441_c0_g1	1361	1381	1372	-27.90	-18.20	0.652329749103943	5.5	1-17,1381-1365;19-20,1363-1362	18-18,1364-1364[SIL];21-21,1361-1361[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	UUUGGUUAUUUUUUCUUGGUA&UAUUAAGAAAAGGUAACGAAG	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a90_TRINITY_DN441_c0_g1_1372_TPlot.pdf
TRINITY_DN441_c0_g1:1373	si_a89	TRINITY_DN441_c0_g1	1362	1382	1373	-26.40	-18.80	0.712121212121212	4	1-18,1382-1365;20-21,1363-1362	19-19,1364-1364[SIL]	((.((((((((((((((((((&)))))))))))))))))).))	UUGGUUAUUUUUUCUUGGUAA&UUAUUAAGAAAAGGUAACGAA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN441_c0_g1_1373_TPlot.pdf
TRINITY_DN441_c0_g1:1375	si_a87	TRINITY_DN441_c0_g1	1364	1384	1375	-27.10	-17.90	0.660516605166052	7	3-20,1382-1365	1-2,1384-1383[UP5];21-21,1364-1364[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GGUUAUUUUUUCUUGGUAAAA&CAUUAUUAAGAAAAGGUAACG	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a87_TRINITY_DN441_c0_g1_1375_TPlot.pdf
TRINITY_DN441_c0_g1:1376	si_a86	TRINITY_DN441_c0_g1	1365	1385	1376	-26.60	-17.30	0.650375939849624	8	4-21,1382-1365	1-3,1385-1383[UP5]	((((((((((((((((((...&...))))))))))))))))))	GUUAUUUUUUCUUGGUAAAAU&UCAUUAUUAAGAAAAGGUAAC	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN441_c0_g1_1376_TPlot.pdf
TRINITY_DN441_c0_g1:678	si_s897	TRINITY_DN441_c0_g1	667	698	678	-31.30	-20.50	0.654952076677316	24	2-6,697-693;7-8,682-681;9-21,679-667	1-1,698-698[UP5];x-x,692-683[BULt];x-x,680-680[BULt]	(((((((((((((.((..........(((((.&.)))))----------))-)))))))))))))	UUGAAAUUGAAGAUGAUUUGGAAGAGGAGCCA&AGGCUU----------UC-UCUUCAAUUUCAA	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN441_c0_g1_678_TPlot.pdf
TRINITY_DN441_c0_g1:684	si_a68	TRINITY_DN441_c0_g1	673	693	684	-25.40	-19.40	0.763779527559055	6	1-19,693-675	20-21,674-673[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUGAAGAUGAUUUGGAAGAGG&CUUCUUUCAAAUUGUUUUUCA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN441_c0_g1_684_TPlot.pdf
TRINITY_DN4422_c0_g1:481	si_s633	TRINITY_DN4422_c0_g1	469	490	481	-37.90	-26.60	0.701846965699208	7	1-11,490-480;12-12,478-478;14-16,476-474;18-20,472-470	x-x,479-479[BULt];13-13,477-477[SIL];17-17,473-473[SIL];21-21,469-469[UP3]	.(((.(((.(.(((((((((((&)))))))))))-).))).))).	UGGGGAGGGGUCCUACGGAAAG&CUUUUCGUAGG-CGUUUGCCCU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN4422_c0_g1_481_TPlot.pdf
TRINITY_DN4422_c0_g1:482	si_s632	TRINITY_DN4422_c0_g1	470	491	482	-38.20	-26.40	0.691099476439791	6.5	1-12,491-480;13-13,478-478;15-17,476-474;19-21,472-470	x-x,479-479[BULt];14-14,477-477[SIL];18-18,473-473[SIL]	(((.(((.(.((((((((((((&))))))))))))-).))).)))	GGGGAGGGGUCCUACGGAAAGG&UCUUUUCGUAGG-CGUUUGCCC	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN4422_c0_g1_482_TPlot.pdf
TRINITY_DN4422_c0_g1:483	si_s631	TRINITY_DN4422_c0_g1	471	492	483	-36.00	-24.90	0.691666666666667	6	1-13,492-480;14-14,478-478;16-18,476-474;20-21,472-471	x-x,479-479[BULt];15-15,477-477[SIL];19-19,473-473[SIL]	((.(((.(.(((((((((((((&)))))))))))))-).))).))	GGGAGGGGUCCUACGGAAAGGU&AUCUUUUCGUAGG-CGUUUGCC	2	0.923949129079098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN4422_c0_g1_483_TPlot.pdf
TRINITY_DN44245_c0_g1:267	si_s437	TRINITY_DN44245_c0_g1	256	276	267	-19.70	-14.20	0.720812182741117	8	4-14,273-263;16-21,261-256	1-3,276-274[UP5];15-15,262-262[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UUAUAUUUAGUGUGUAAUGAU&AUAAUUACAUAUUAUAUAUAA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN44245_c0_g1_267_TPlot.pdf
TRINITY_DN4424_c0_g1:1003	si_a635	TRINITY_DN4424_c0_g1	992	1012	1003	-26.10	-18.00	0.689655172413793	5	3-15,1010-998;17-21,996-992	1-2,1012-1011[UP5];16-16,997-997[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AUUACCCAAAAAAAUUGACCC&AUGUCGAUUUUUUUGAGUAAU	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4424_c0_g1_1003_TPlot.pdf
TRINITY_DN4424_c0_g1:1120	si_a409	TRINITY_DN4424_c0_g1	1109	1130	1120	-19.50	-12.80	0.656410256410256	8	1-4,1130-1127;5-16,1125-1114	x-x,1126-1126[BULt];17-21,1113-1109[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	AAUAAUAAAUAUAAACACAGAC&GUUU-UGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4424_c0_g1_1120_TPlot.pdf
TRINITY_DN4424_c0_g1:222	si_a407	TRINITY_DN4424_c0_g1	211	231	222	-19.80	-12.90	0.651515151515151	6.5	1-12,231-220;14-18,218-214	13-13,219-219[SIL];19-21,213-211[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	CUAUAAAUUUAAACGAAACGG&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4424_c0_g1_222_TPlot.pdf
TRINITY_DN4424_c0_g1:301	si_s87	TRINITY_DN4424_c0_g1	284	313	301	-32.90	-21.60	0.656534954407295	19.5	1-5,313-309;6-12,305-299;13-20,292-285	x-x,308-306[BULt];x-x,298-293[BULt];21-21,284-284[UP3]	.((((((((......(((((((...(((((&)))))---)))))))------)))))))).	CAGCGAGGAGGAUCAAGAAGAAAGUAGGAA&UUCCU---UUCUUCU------UCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4424_c0_g1_301_TPlot.pdf
TRINITY_DN4424_c0_g1:313	si_a786	TRINITY_DN4424_c0_g1	302	324	313	-26.60	-17.60	0.661654135338346	8.5	2-6,323-319;7-20,316-303	1-1,324-324[UP5];x-x,318-317[BULt];21-21,302-302[UP3]	.((((((((((((((..(((((.&.)))))--)))))))))))))).	AGAAAGUAGGAAGAUCAAGAAGU&UCUUCU--AUUUUUCUAUUUUCC	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4424_c0_g1_313_TPlot.pdf
TRINITY_DN4424_c0_g1:446	si_a781	TRINITY_DN4424_c0_g1	434	456	446	-27.40	-18.70	0.682481751824818	6	1-4,456-453;5-17,451-439;18-19,437-436	x-x,452-452[BULt];x-x,438-438[BULt];20-21,435-434[UP3]	..((.(((((((((((((.((((&))))-)))))))))))))-))..	GAAGAAAAAAUGGAAGAGAUUGA&UCAA-CUCUUCUAUUUUU-CUAU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN4424_c0_g1_446_TPlot.pdf
TRINITY_DN4424_c0_g1:450	si_a777	TRINITY_DN4424_c0_g1	439	460	450	-27.00	-17.90	0.662962962962963	9.5	5-8,456-453;9-21,451-439	1-4,460-457[UP5];x-x,452-452[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	AAAAAUGGAAGAGAUUGAUGAC&UGAUUCAA-CUCUUCUAUUUUU	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN4424_c0_g1_450_TPlot.pdf
TRINITY_DN4424_c0_g1:563	si_a635	TRINITY_DN4424_c0_g1	552	572	563	-26.10	-17.10	0.655172413793103	11	2-3,571-570;5-18,568-555	1-1,572-572[UP5];4-4,569-569[SIL];19-21,554-552[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	CAAGCUCAGGAGGAUUGUCAA&AUGUCGAUUUUUUUGAGUAAU	3	0.999999999999883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4424_c0_g1_563_TPlot.pdf
TRINITY_DN44256_c0_g1:190	si_s795	TRINITY_DN44256_c0_g1	173	199	190	-30.30	-20.10	0.663366336633663	13	3-13,197-187;14-20,180-174	1-2,199-198[UP5];x-x,186-181[BULt];21-21,173-173[UP3]	.(((((((......(((((((((((..&..)))))))))))------))))))).	CCGAAGAUUUUCACAAGAUGCGAGUAG&AAGCUCGUAUUUU------AUCUUCGU	0	0.238649829832163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN44256_c0_g1_190_TPlot.pdf
TRINITY_DN4425_c0_g1:378	si_a337	TRINITY_DN4425_c0_g1	367	387	378	-30.80	-20.60	0.668831168831169	10	2-12,386-376	1-1,387-387[UP5];13-21,375-367[UP3]	.........(((((((((((.&.))))))))))).........	UAAAAAAAUGGGACAAGGAAA&AUUCCUUGUCCCGAAAAUAUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN4425_c0_g1_378_TPlot.pdf
TRINITY_DN4425_c0_g1:379	si_a336	TRINITY_DN4425_c0_g1	368	388	379	-31.20	-20.60	0.66025641025641	11	3-13,386-376	1-2,388-387[UP5];14-21,375-368[UP3]	........(((((((((((..&..)))))))))))........	AAAAAAAUGGGACAAGGAAAA&UAUUCCUUGUCCCGAAAAUAU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN4425_c0_g1_379_TPlot.pdf
TRINITY_DN4425_c0_g1:382	si_a333	TRINITY_DN4425_c0_g1	371	391	382	-30.60	-20.60	0.673202614379085	14	6-16,386-376	1-5,391-387[UP5];17-21,375-371[UP3]	.....(((((((((((.....&.....))))))))))).....	AAAAUGGGACAAGGAAAAUGA&UUUUAUUCCUUGUCCCGAAAA	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN4425_c0_g1_382_TPlot.pdf
TRINITY_DN4427_c0_g1:547	si_s74	TRINITY_DN4427_c0_g1	528	556	547	-25.00	-17.10	0.684	11.5	1-14,556-543;15-20,534-529	x-x,542-535[BULt];21-21,528-528[UP3]	.((((((........((((((((((((((&))))))))))))))--------)))))).	UAAAGGAGGCCUAUCGAGAGAAAAAAUGG&CUAUUUUUUUUCUU--------UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4427_c0_g1_547_TPlot.pdf
TRINITY_DN4429_c0_g1:1177	si_s809	TRINITY_DN4429_c0_g1	1162	1185	1177	-28.50	-18.60	0.652631578947368	9	1-8,1185-1178;10-13,1177-1174;14-20,1169-1163	9-9,x-x[BULq];x-x,1173-1170[BULt];21-21,1162-1162[UP3]	.(((((((....((((-((((((((&)))))))).))))----))))))).	UUUGAGAAAAAAGAGG-AACGAGGA&UCUUCGUUACCUU----UUCUUAAU	3	0.999999999997415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4429_c0_g1_1177_TPlot.pdf
TRINITY_DN4429_c0_g1:1287	si_s79	TRINITY_DN4429_c0_g1	1276	1296	1287	-26.20	-17.40	0.66412213740458	10.5	5-16,1292-1281;18-19,1279-1278	1-4,1296-1293[UP5];17-17,1280-1280[SIL];20-21,1277-1276[UP3]	..((.((((((((((((....&....)))))))))))).))..	UCGACGGAAGGAAAGAACAAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4429_c0_g1_1287_TPlot.pdf
TRINITY_DN4429_c0_g1:757	si_a466	TRINITY_DN4429_c0_g1	746	769	757	-21.50	-14.00	0.651162790697674	11	1-7,769-763;8-19,759-748	x-x,762-760[BULt];20-21,747-746[UP3]	..((((((((((((...(((((((&)))))))---))))))))))))..	UGGAUGAUUGCAUAGGAUUGUAUA&UAUAUAA---UAUGUAAUUAUUGU	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN4429_c0_g1_757_TPlot.pdf
TRINITY_DN4429_c0_g1:758	si_a465	TRINITY_DN4429_c0_g1	747	770	758	-20.90	-14.00	0.669856459330144	10.5	2-8,769-763;9-20,759-748	1-1,770-770[UP5];x-x,762-760[BULt];21-21,747-747[UP3]	.((((((((((((...(((((((.&.)))))))---)))))))))))).	GGAUGAUUGCAUAGGAUUGUAUAA&AUAUAUAA---UAUGUAAUUAUUG	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN4429_c0_g1_758_TPlot.pdf
TRINITY_DN44309_c0_g1:76	si_s108	TRINITY_DN44309_c0_g1	65	85	76	-27.60	-18.50	0.670289855072464	6	4-21,82-65	1-3,85-83[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUUUUUCUAUUUUCUAAUAAU&CGGAUUGGAAAAUAGAAAAAU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN44309_c0_g1_76_TPlot.pdf
TRINITY_DN4430_c0_g1:1607	si_s799	TRINITY_DN4430_c0_g1	1597	1618	1607	-30.00	-19.70	0.656666666666667	7	1-4,1618-1615;6-18,1611-1599;20-21,1598-1597	5-5,1614-1612[AILt];19-19,x-x[BULq]	((-(((((((((((((...((((&))))--.))))))))))))).))	GG-AACGAAGAUAAAAAAGACGA&UCGU--AUUUUAUCUUCGUUACC	2	0.992006333570158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN4430_c0_g1_1607_TPlot.pdf
TRINITY_DN4431_c0_g1:1636	si_s79	TRINITY_DN4431_c0_g1	1625	1645	1636	-26.20	-17.70	0.675572519083969	9	4-12,1642-1634;15-21,1631-1625	1-3,1645-1643[UP5];13-14,1633-1632[SIL]	(((((((..(((((((((...&...)))))))))..)))))))	AAGGAGGCUGGAAAGAAGCAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4431_c0_g1_1636_TPlot.pdf
TRINITY_DN4431_c0_g1:1822	si_s390	TRINITY_DN4431_c0_g1	1811	1832	1822	-37.00	-24.40	0.659459459459459	7	2-7,1831-1826;8-14,1824-1818;16-19,1816-1813	1-1,1832-1832[UP5];x-x,1825-1825[BULt];15-15,1817-1817[SIL];20-21,1812-1811[UP3]	..((((.(((((((.((((((.&.))))))-))))))).))))..	AGUUCCAUGGAAUGUUGAGGCU&CGCCUUA-CAUUCCAAGGAAGA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s390_TRINITY_DN4431_c0_g1_1822_TPlot.pdf
TRINITY_DN4432_c0_g1:1130	si_a501	TRINITY_DN4432_c0_g1	1119	1138	1130	-33.50	-25.80	0.770149253731343	6.5	1-8,1138-1131;10-19,1130-1121	9-9,x-x[BULq];20-21,1120-1119[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	ACCCGAGGAAGA-GGAAGACG&CGUUUUUCGUCUUCCUUGGAA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4432_c0_g1_1130_TPlot.pdf
TRINITY_DN4432_c0_g1:1134	si_a779	TRINITY_DN4432_c0_g1	1124	1144	1134	-27.00	-17.60	0.651851851851852	5.5	2-7,1143-1138;8-13,1136-1131;15-21,1130-1124	1-1,1144-1144[UP5];x-x,1137-1137[BULt];14-14,x-x[BULq]	(((((((-((((((.((((((.&.))))))-)))))).)))))))	AGGAAGA-GGAAGACGUUGAAG&AUUCAAC-UCUUCUAUUUUUCU	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN4432_c0_g1_1134_TPlot.pdf
TRINITY_DN4432_c0_g1:1176	si_a142	TRINITY_DN4432_c0_g1	1164	1185	1176	-23.50	-15.30	0.651063829787234	10.5	3-11,1183-1175;12-18,1173-1167	1-2,1185-1184[UP5];x-x,1174-1174[BULt];19-21,1166-1164[UP3]	...(((((((.(((((((((..&..)))))))))-)))))))...	UAUAAACAGCAAACGGUUGAGU&AAUUAAUCGUU-GUUGUUUUAA	2	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN4432_c0_g1_1176_TPlot.pdf
TRINITY_DN4432_c0_g1:1270	si_s83	TRINITY_DN4432_c0_g1	1247	1279	1270	-30.90	-20.90	0.676375404530744	13.5	1-13,1279-1267;14-20,1254-1248	x-x,1266-1255[BULt];21-21,1247-1247[UP3]	.(((((((............(((((((((((((&)))))))))))))------------))))))).	UGAGAAGAAUUGAAUAGUAAAGAAAGGAAAGAA&UUCUUUCCUUUCU------------UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4432_c0_g1_1270_TPlot.pdf
TRINITY_DN4432_c0_g1:2087	si_s264	TRINITY_DN4432_c0_g1	2076	2096	2087	-26.30	-19.60	0.745247148288973	9.5	6-21,2091-2076	1-5,2096-2092[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGUUGAUUUUUUUGAGAAAGU&UAUUACUCAAAAAAAUCGACA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s264_TRINITY_DN4432_c0_g1_2087_TPlot.pdf
TRINITY_DN4432_c0_g1:2088	si_s263	TRINITY_DN4432_c0_g1	2077	2097	2088	-25.80	-18.20	0.705426356589147	11.5	7-21,2091-2077	1-6,2097-2092[UP5]	(((((((((((((((......&......)))))))))))))))	GUUGAUUUUUUUGAGAAAGUU&AUAUUACUCAAAAAAAUCGAC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s263_TRINITY_DN4432_c0_g1_2088_TPlot.pdf
TRINITY_DN4433_c0_g1:1766	si_a785	TRINITY_DN4433_c0_g1	1755	1775	1766	-25.90	-17.90	0.691119691119691	7.5	3-7,1773-1769;9-21,1767-1755	1-2,1775-1774[UP5];8-8,1768-1768[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAGAGUGGAAAAGCAGAAGCU&CUCUUCUAUUUUUCUAUUUUC	2	0.999999778137766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4433_c0_g1_1766_TPlot.pdf
TRINITY_DN4435_c0_g2:332	si_a762	TRINITY_DN4435_c0_g2	317	342	332	-29.70	-20.30	0.683501683501683	10	1-9,342-334;10-15,332-327;16-21,322-317	x-x,333-333[BULt];x-x,326-323[BULt]	((((((....((((((.(((((((((&)))))))))-))))))----))))))	GAAUUAUCAAGUCGAACAGCCCGAAG&CUUUGGGUU-UUUGAU----UGAUUC	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN4435_c0_g2_332_TPlot.pdf
TRINITY_DN4435_c0_g2:335	si_a760	TRINITY_DN4435_c0_g2	322	344	335	-31.10	-24.20	0.778135048231511	6	1-11,344-334;12-18,332-326;19-21,324-322	x-x,333-333[BULt];x-x,325-325[BULt]	(((.(((((((.(((((((((((&)))))))))))-)))))))-)))	AUCAAGUCGAACAGCCCGAAGGA&UCCUUUGGGUU-UUUGAUU-GAU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN4435_c0_g2_335_TPlot.pdf
TRINITY_DN4435_c0_g2:339	si_a756	TRINITY_DN4435_c0_g2	327	348	339	-33.10	-22.00	0.664652567975831	10.5	5-15,344-334;16-21,332-327	1-4,348-345[UP5];x-x,333-333[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GUCGAACAGCCCGAAGGAAUUG&AACCUCCUUUGGGUU-UUUGAU	2	0.999982046377902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4435_c0_g2_339_TPlot.pdf
TRINITY_DN4436_c0_g2:2241	si_a140	TRINITY_DN4436_c0_g2	2229	2250	2241	-25.20	-16.40	0.650793650793651	11.5	4-12,2247-2239;13-20,2237-2230	1-3,2250-2248[UP5];x-x,2238-2238[BULt];21-21,2229-2229[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	UAAACGACAGGCGAUUGGUAAG&GUAAUUAAUCGU-UGUUGUUUU	2	0.999997966586644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN4436_c0_g2_2241_TPlot.pdf
TRINITY_DN4437_c0_g1:40	si_s495	TRINITY_DN4437_c0_g1	28	49	40	-19.80	-14.60	0.737373737373737	5	2-13,48-37;14-19,35-30	1-1,49-49[UP5];x-x,36-36[BULt];20-21,29-28[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	GUUUGUUUAUGUUUAUGUUUAU&UUAAAUAUAAACA-AAACAAUU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN4437_c0_g1_40_TPlot.pdf
TRINITY_DN4438_c0_g1:1147	si_s68	TRINITY_DN4438_c0_g1	1136	1156	1147	-23.10	-15.40	0.666666666666667	6.5	2-4,1155-1153;6-18,1151-1139	1-1,1156-1156[UP5];5-5,1152-1152[SIL];19-21,1138-1136[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	CUCGAAAGAAAAUAGAUGUUC&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4438_c0_g1_1147_TPlot.pdf
TRINITY_DN4438_c0_g1:1179	si_s577	TRINITY_DN4438_c0_g1	1168	1188	1179	-26.80	-17.84	0.665671641791045	12.5	3-9,1186-1180;15-21,1174-1168	1-2,1188-1187[UP5];10-14,1179-1175[SIL]	(((((((.....(((((((..&..))))))).....)))))))	UCCAUGGGUAGGUUGUUCCAA&AAGGAAUAAAAAAAUCAUGGA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s577_TRINITY_DN4438_c0_g1_1179_TPlot.pdf
TRINITY_DN4438_c0_g1:1831	si_a784	TRINITY_DN4438_c0_g1	1819	1841	1831	-24.70	-16.50	0.668016194331984	8	1-9,1841-1833;10-13,1831-1828;14-21,1826-1819	x-x,1832-1832[BULt];x-x,1827-1827[BULt]	((((((((.((((.(((((((((&)))))))))-))))-))))))))	GGGAUAGACGGGACUAGGAGAGU&ACUCUUCUA-UUUU-UCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4438_c0_g1_1831_TPlot.pdf
TRINITY_DN4438_c0_g1:2375	si_s76	TRINITY_DN4438_c0_g1	2364	2384	2375	-23.60	-15.60	0.661016949152542	8	1-3,2384-2382;5-18,2380-2367	4-4,2381-2381[SIL];19-21,2366-2364[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UCUAAAGGAAGGAAGAGUAAU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4438_c0_g1_2375_TPlot.pdf
TRINITY_DN4438_c0_g1:2377	si_s74	TRINITY_DN4438_c0_g1	2366	2386	2377	-25.00	-19.50	0.78	6.5	1-5,2386-2382;7-20,2380-2367	6-6,2381-2381[SIL];21-21,2366-2366[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	UAAAGGAAGGAAGAGUAAUGG&CUAUUUUUUUUCUUUCCUUUC	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4438_c0_g1_2377_TPlot.pdf
TRINITY_DN4438_c0_g1:2382	si_s69	TRINITY_DN4438_c0_g1	2371	2391	2382	-23.40	-16.00	0.683760683760684	10	4-10,2388-2382;12-21,2380-2371	1-3,2391-2389[UP5];11-11,2381-2381[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GAAGGAAGAGUAAUGGAAACC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4438_c0_g1_2382_TPlot.pdf
TRINITY_DN4438_c0_g1:449	si_a406	TRINITY_DN4438_c0_g1	438	458	449	-19.80	-13.50	0.681818181818182	12	4-18,455-441	1-3,458-456[UP5];19-21,440-438[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAGAAGUGUAGACAAGAUUAU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999763859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4438_c0_g1_449_TPlot.pdf
TRINITY_DN4438_c0_g1:450	si_a405	TRINITY_DN4438_c0_g1	439	459	450	-19.80	-13.50	0.681818181818182	13	5-19,455-441	1-4,459-456[UP5];20-21,440-439[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGAAGUGUAGACAAGAUUAUG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4438_c0_g1_450_TPlot.pdf
TRINITY_DN4438_c0_g1:697	si_a20	TRINITY_DN4438_c0_g1	686	709	697	-26.70	-19.00	0.711610486891386	9	1-9,709-701;10-15,697-692;17-20,690-687	x-x,700-698[BULt];16-16,691-691[SIL];21-21,686-686[UP3]	.((((.((((((...(((((((((&)))))))))---)))))).)))).	AAGAAGUAAGAAUCUUAAAUAGGC&GCCUAUUUA---UUUUUAGUUCUA	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4438_c0_g1_697_TPlot.pdf
TRINITY_DN4438_c0_g1:701	si_a19	TRINITY_DN4438_c0_g1	687	710	701	-27.00	-18.80	0.696296296296296	8.5	2-10,709-701;11-16,697-692;18-21,690-687	1-1,710-710[UP5];x-x,700-698[BULt];17-17,691-691[SIL]	((((.((((((...(((((((((.&.)))))))))---)))))).))))	AGAAGUAAGAAUCUUAAAUAGGCA&AGCCUAUUUA---UUUUUAGUUCU	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4438_c0_g1_701_TPlot.pdf
TRINITY_DN4438_c0_g1:702	si_a18	TRINITY_DN4438_c0_g1	688	711	702	-26.30	-17.50	0.665399239543726	10.5	3-11,709-701;12-17,697-692;19-21,690-688	1-2,711-710[UP5];x-x,700-698[BULt];18-18,691-691[SIL]	(((.((((((...(((((((((..&..)))))))))---)))))).)))	GAAGUAAGAAUCUUAAAUAGGCAA&AAGCCUAUUUA---UUUUUAGUUC	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN4438_c0_g1_702_TPlot.pdf
TRINITY_DN4438_c0_g1:771	si_a143	TRINITY_DN4438_c0_g1	760	780	771	-25.10	-16.70	0.665338645418327	8.5	2-11,779-770;13-18,768-763	1-1,780-780[UP5];12-12,769-769[SIL];19-21,762-760[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	AAAAGAACAUCAACGGUUGAG&AUUAAUCGUUGUUGUUUUAAG	4	0.999999214893531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN4438_c0_g1_771_TPlot.pdf
TRINITY_DN4438_c0_g1:774	si_a140	TRINITY_DN4438_c0_g1	763	783	774	-25.20	-16.40	0.650793650793651	10.5	5-14,779-770;16-21,768-763	1-4,783-780[UP5];15-15,769-769[SIL]	((((((.((((((((((....&....)))))))))).))))))	AGAACAUCAACGGUUGAGGAA&GUAAUUAAUCGUUGUUGUUUU	3	0.999999999006427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN4438_c0_g1_774_TPlot.pdf
TRINITY_DN4438_c0_g1:851	si_s77	TRINITY_DN4438_c0_g1	840	860	851	-25.50	-18.40	0.72156862745098	7	1-11,860-850;13-20,848-841	12-12,849-849[SIL];21-21,840-840[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	AGAGAGGGGCAAGAAGGAAAG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4438_c0_g1_851_TPlot.pdf
TRINITY_DN4438_c0_g1:853	si_a68	TRINITY_DN4438_c0_g1	842	863	853	-25.40	-17.92	0.705511811023622	12	1-8,863-856;12-20,851-843	9-11,855-852[AILt];21-21,842-842[UP3]	.(((((((((....((((((((&))))))))-...))))))))).	AGAGGGGCAAGAAGGAAAGGAG&CUUCUUUC-AAAUUGUUUUUCA	2	0.998395044015175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4438_c0_g1_853_TPlot.pdf
TRINITY_DN4438_c0_g1:857	si_s312	TRINITY_DN4438_c0_g1	846	866	857	-29.00	-19.00	0.655172413793103	12	5-8,862-859;10-20,857-847	1-4,866-863[UP5];9-9,858-858[SIL];21-21,846-846[UP3]	.(((((((((((.((((....&....)))).))))))))))).	GGGCAAGAAGGAAAGGAGAGC&AAAAUUCUGUCCUUCUUGUUA	4	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4438_c0_g1_857_TPlot.pdf
TRINITY_DN4438_c0_g1:862	si_s74	TRINITY_DN4438_c0_g1	851	871	862	-25.00	-19.30	0.772	6.5	1-5,871-867;7-20,865-852	6-6,866-866[SIL];21-21,851-851[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	AGAAGGAAAGGAGAGCAAUAG&CUAUUUUUUUUCUUUCCUUUC	2	0.995656031900421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4438_c0_g1_862_TPlot.pdf
TRINITY_DN4438_c0_g1:944	si_s67	TRINITY_DN4438_c0_g1	933	953	944	-25.60	-17.00	0.6640625	9.5	1-2,953-952;5-18,949-936	3-4,951-950[SIL];19-21,935-933[UP3]	...((((((((((((((..((&))..))))))))))))))...	UUCAAAGAAGGUAGAAGGAGC&GCAACUUCUAUUUUUUUUCUU	3	0.99999999999862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4438_c0_g1_944_TPlot.pdf
TRINITY_DN4438_c0_g1:945	si_s66	TRINITY_DN4438_c0_g1	934	954	945	-26.30	-17.10	0.650190114068441	9	2-3,953-952;6-19,949-936	1-1,954-954[UP5];4-5,951-950[SIL];20-21,935-934[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	UCAAAGAAGGUAGAAGGAGCA&AGCAACUUCUAUUUUUUUUCU	2	0.999999591734411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN4438_c0_g1_945_TPlot.pdf
TRINITY_DN4438_c0_g1:946	si_s65	TRINITY_DN4438_c0_g1	935	955	946	-26.00	-17.10	0.657692307692308	9.5	3-4,953-952;7-20,949-936	1-2,955-954[UP5];5-6,951-950[SIL];21-21,935-935[UP3]	.((((((((((((((..((..&..))..)))))))))))))).	CAAAGAAGGUAGAAGGAGCAA&UAGCAACUUCUAUUUUUUUUC	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN4438_c0_g1_946_TPlot.pdf
TRINITY_DN4438_c0_g1:981	si_a786	TRINITY_DN4438_c0_g1	970	991	981	-26.60	-17.60	0.661654135338346	7.5	1-5,991-987;8-14,983-977;16-21,975-970	6-7,986-984[AILt];15-15,976-976[SIL]	((((((.(((((((...(((((&)))))-..))))))).))))))	GGAGAAGAGAAAAAGAUGAAGA&UCUUC-UAUUUUUCUAUUUUCC	2	0.99999999813598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4438_c0_g1_981_TPlot.pdf
TRINITY_DN443_c0_g1:2972	si_s481	TRINITY_DN443_c0_g1	2962	2982	2972	-23.00	-15.30	0.665217391304348	5.5	1-4,2982-2979;5-15,2977-2967;17-21,2966-2962	x-x,2978-2978[BULt];16-16,x-x[BULq]	(((((-(((((((((((.((((&))))-))))))))))).)))))	UAUUU-AGUAAAUAUGGAGGUC&GAUC-CUAUAUUUAUUUAAAUA	2	0.993767817732346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN443_c0_g1_2972_TPlot.pdf
TRINITY_DN4441_c0_g1:1761	si_a787	TRINITY_DN4441_c0_g1	1751	1769	1761	-26.30	-18.20	0.692015209125475	4.5	1-5,1769-1765;7-17,1764-1754;19-21,1753-1751	6-6,x-x[BULq];18-18,x-x[BULq]	(((-(((((((((((-(((((&))))).))))))))))).)))	UGG-AAAUGGAAGAA-AGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999996625536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4441_c0_g1_1761_TPlot.pdf
TRINITY_DN4441_c0_g1:1763	si_a785	TRINITY_DN4441_c0_g1	1752	1775	1763	-25.90	-19.14	0.738996138996139	11	1-7,1775-1769;9-21,1764-1752	8-8,1768-1765[AILt]	(((((((((((((....(((((((&)))))))---.)))))))))))))	GGAAAUGGAAGAAAGAAGGAAGAG&CUCUUCU---AUUUUUCUAUUUUC	0	0.205177402855708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4441_c0_g1_1763_TPlot.pdf
TRINITY_DN4441_c0_g1:1767	si_s79	TRINITY_DN4441_c0_g1	1757	1776	1767	-26.20	-17.80	0.679389312977099	7.5	2-11,1775-1766;13-20,1765-1758	1-1,1776-1776[UP5];12-12,x-x[BULq];21-21,1757-1757[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	UGGAAGAAA-GAAGGAAGAGU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4441_c0_g1_1767_TPlot.pdf
TRINITY_DN4441_c0_g1:1771	si_a780	TRINITY_DN4441_c0_g1	1760	1780	1771	-27.30	-18.60	0.681318681318681	6.5	1-3,1780-1778;5-12,1776-1769;14-20,1767-1761	4-4,1777-1777[SIL];13-13,1768-1768[SIL];21-21,1760-1760[UP3]	.(((((((.((((((((.(((&))).)))))))).))))))).	AAGAAAGAAGGAAGAGUAGGA&UUCAACUCUUCUAUUUUUCUA	2	0.997083128970816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN4441_c0_g1_1771_TPlot.pdf
TRINITY_DN4441_c0_g1:1773	si_a778	TRINITY_DN4441_c0_g1	1762	1782	1773	-28.30	-19.60	0.692579505300353	5.5	1-5,1782-1778;7-14,1776-1769;16-21,1767-1762	6-6,1777-1777[SIL];15-15,1768-1768[SIL]	((((((.((((((((.(((((&))))).)))))))).))))))	GAAAGAAGGAAGAGUAGGAUU&GAUUCAACUCUUCUAUUUUUC	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN4441_c0_g1_1773_TPlot.pdf
TRINITY_DN4442_c0_g1:5123	si_s550	TRINITY_DN4442_c0_g1	5112	5132	5123	-20.30	-13.20	0.650246305418719	3.5	2-13,5131-5120;15-21,5118-5112	1-1,5132-5132[UP5];14-14,5119-5119[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AGAAUAUGAAUUUUAUUUUGU&UCAAAAUAGAAUUAAUAUUUU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN4442_c0_g1_5123_TPlot.pdf
TRINITY_DN4442_c0_g1:520	si_a758	TRINITY_DN4442_c0_g1	509	532	520	-34.00	-22.50	0.661764705882353	12	1-6,532-527;7-17,523-513	x-x,526-524[BULt];18-21,512-509[UP3]	....(((((((((((...((((((&))))))---)))))))))))....	UUUGCAAAAACCUAAGAAGGGAGG&CCUCCU---UUGGGUUUUUGAUUG	3	0.999999640571353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN4442_c0_g1_520_TPlot.pdf
TRINITY_DN4442_c0_g1:521	si_a757	TRINITY_DN4442_c0_g1	510	533	521	-33.10	-22.50	0.6797583081571	12	2-7,532-527;8-18,523-513	1-1,533-533[UP5];x-x,526-524[BULt];19-21,512-510[UP3]	...(((((((((((...((((((.&.))))))---)))))))))))...	UUGCAAAAACCUAAGAAGGGAGGA&ACCUCCU---UUGGGUUUUUGAUU	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4442_c0_g1_521_TPlot.pdf
TRINITY_DN4442_c0_g1:522	si_a756	TRINITY_DN4442_c0_g1	511	534	522	-33.10	-22.50	0.6797583081571	13	3-8,532-527;9-19,523-513	1-2,534-533[UP5];x-x,526-524[BULt];20-21,512-511[UP3]	..(((((((((((...((((((..&..))))))---)))))))))))..	UGCAAAAACCUAAGAAGGGAGGAG&AACCUCCU---UUGGGUUUUUGAU	2	0.999565582530106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4442_c0_g1_522_TPlot.pdf
TRINITY_DN4442_c0_g1:620	si_a319	TRINITY_DN4442_c0_g1	609	629	620	-22.40	-15.20	0.678571428571429	12	5-19,625-611	1-4,629-626[UP5];20-21,610-609[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUUGGAAAAGUUAUGGAGGUU&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999990558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4442_c0_g1_620_TPlot.pdf
TRINITY_DN4442_c0_g1:622	si_s67	TRINITY_DN4442_c0_g1	611	631	622	-25.60	-18.50	0.72265625	7.5	1-11,631-621;14-20,618-612	12-13,620-619[SIL];21-21,611-611[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	UGGAAAAGUUAUGGAGGUUGU&GCAACUUCUAUUUUUUUUCUU	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4442_c0_g1_622_TPlot.pdf
TRINITY_DN4442_c0_g1:6881	si_a172	TRINITY_DN4442_c0_g1	6871	6890	6881	-31.90	-20.80	0.652037617554859	6.5	1-8,6890-6883;10-12,6881-6879;14-21,6878-6871	9-9,6882-6882[SIL];13-13,x-x[BULq]	((((((((-(((.((((((((&)))))))).))).))))))))	AUAUUAUU-AGGGGGGUGGGU&AUUCACCCGUCUAGAUAAUAU	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN4442_c0_g1_6881_TPlot.pdf
TRINITY_DN4442_c0_g1:797	si_s69	TRINITY_DN4442_c0_g1	786	806	797	-23.40	-17.50	0.747863247863248	8.5	3-12,804-795;14-21,793-786	1-2,806-805[UP5];13-13,794-794[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GGGGGAAAUAAGAUGGGAGGC&AACUUCUAUUUUUUUUCUUUC	4	0.999999990128624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4442_c0_g1_797_TPlot.pdf
TRINITY_DN4444_c0_g1:1439	si_a784	TRINITY_DN4444_c0_g1	1427	1448	1439	-24.70	-18.20	0.736842105263158	3.5	1-4,1448-1445;6-14,1443-1435;15-21,1433-1427	5-5,1444-1444[SIL];x-x,1434-1434[BULt]	(((((((.(((((((((.((((&)))).)))))))))-)))))))	AAAAUGGAAAAAAUAGAUGAGU&ACUCUUCUAUUUUU-CUAUUUU	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4444_c0_g1_1439_TPlot.pdf
TRINITY_DN44457_c0_g1:36	si_s76	TRINITY_DN44457_c0_g1	25	46	36	-23.60	-15.90	0.673728813559322	6.5	1-7,46-40;8-18,38-28	x-x,39-39[BULt];19-21,27-25[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	AAUAGAGGAAAGAACAAAGAAU&AUUUUUU-UUCUUUCCUUUCUU	0	0.93113371304191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44457_c0_g1_36_TPlot.pdf
TRINITY_DN44457_c0_g1:37	si_s75	TRINITY_DN44457_c0_g1	26	47	37	-24.00	-17.00	0.708333333333333	5.5	1-8,47-40;9-19,38-28	x-x,39-39[BULt];20-21,27-26[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	AUAGAGGAAAGAACAAAGAAUA&UAUUUUUU-UUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN44457_c0_g1_37_TPlot.pdf
TRINITY_DN44457_c0_g1:70	si_s77	TRINITY_DN44457_c0_g1	53	79	70	-25.50	-17.20	0.674509803921569	9	1-13,79-67;14-16,65-63;17-21,57-53	x-x,66-66[BULt];x-x,62-58[BULt]	(((((.....(((.(((((((((((((&)))))))))))))-)))-----)))))	GAAGAGUGAGAAGAGGAAGAAAAGAGA&UUUUUUUUCUUUC-CUU-----UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN44457_c0_g1_70_TPlot.pdf
TRINITY_DN4446_c0_g1:3850	si_s79	TRINITY_DN4446_c0_g1	3836	3859	3850	-26.20	-18.20	0.694656488549618	12.5	5-17,3855-3843;18-21,3839-3836	1-4,3859-3856[UP5];x-x,3842-3840[BULt]	((((...(((((((((((((....&....)))))))))))))---))))	AAGAUCAAGAAGGGAGAGAGUUAG&UUUUUUCUUUCCUUUCU---UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4446_c0_g1_3850_TPlot.pdf
TRINITY_DN4446_c0_g1:3872	si_s796	TRINITY_DN4446_c0_g1	3861	3881	3872	-30.30	-19.96	0.658745874587459	11	3-7,3879-3875;12-21,3870-3861	1-2,3881-3880[UP5];8-11,3874-3871[SIL]	((((((((((....(((((..&..)))))....))))))))))	AACGAAGAUAUUAGACGAGAA&AGCUCGUAUUUUAUCUUCGUU	4	0.999999747732611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN4446_c0_g1_3872_TPlot.pdf
TRINITY_DN4448_c0_g1:206	si_s437	TRINITY_DN4448_c0_g1	194	215	206	-19.70	-13.60	0.690355329949239	7	2-15,214-201;17-19,198-196	1-1,215-215[UP5];16-16,200-199[AILt];20-21,195-194[UP3]	..(((..((((((((((((((.&.))))))))))))))-.)))..	AAGUAGCGUAAUAUGUGAUUAC&AUAAUUACAUAUUAU-AUAUAA	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN4448_c0_g1_206_TPlot.pdf
TRINITY_DN4448_c0_g1:207	si_s436	TRINITY_DN4448_c0_g1	195	216	207	-19.60	-13.60	0.693877551020408	8	3-16,214-201;18-20,198-196	1-2,216-215[UP5];17-17,200-199[AILt];21-21,195-195[UP3]	.(((..((((((((((((((..&..))))))))))))))-.))).	AGUAGCGUAAUAUGUGAUUACU&AAUAAUUACAUAUUAU-AUAUA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN4448_c0_g1_207_TPlot.pdf
TRINITY_DN4448_c0_g1:76	si_a74	TRINITY_DN4448_c0_g1	63	85	76	-22.20	-16.80	0.756756756756757	7.5	1-10,85-76;11-19,73-65	x-x,75-74[BULt];20-21,64-63[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	GUAUAGUGAAACUGACAAUUUGA&UCAAAUUGUU--UUUCAUUAUUA	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4448_c0_g1_76_TPlot.pdf
TRINITY_DN4448_c0_g1:77	si_a73	TRINITY_DN4448_c0_g1	64	86	77	-21.90	-17.00	0.776255707762557	7.5	2-11,85-76;12-20,73-65	1-1,86-86[UP5];x-x,75-74[BULt];21-21,64-64[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	UAUAGUGAAACUGACAAUUUGAU&UUCAAAUUGUU--UUUCAUUAUU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN4448_c0_g1_77_TPlot.pdf
TRINITY_DN4448_c0_g1:778	si_a398	TRINITY_DN4448_c0_g1	767	789	778	-22.40	-14.60	0.651785714285714	7.5	1-6,789-784;7-8,782-781;9-20,779-768	x-x,783-783[BULt];x-x,780-780[BULt];21-21,767-767[UP3]	.((((((((((((.((.((((((&))))))-))-)))))))))))).	AGGACGAGGCAAUGUCGUAUAUU&AAUAUA-GA-AUUGUUUUGUUUA	4	0.999999999999029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4448_c0_g1_778_TPlot.pdf
TRINITY_DN4448_c0_g1:80	si_a70	TRINITY_DN4448_c0_g1	67	90	80	-23.90	-17.10	0.715481171548117	5	1-4,90-87;5-14,85-76;15-21,73-67	x-x,86-86[BULt];x-x,75-74[BULt]	(((((((..((((((((((.((((&))))-))))))))))--)))))))	AGUGAAACUGACAAUUUGAUAAGA&UCUU-UCAAAUUGUU--UUUCAUU	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4448_c0_g1_80_TPlot.pdf
TRINITY_DN4448_c0_g1:81	si_a69	TRINITY_DN4448_c0_g1	68	91	81	-24.00	-17.20	0.716666666666667	5	1-5,91-87;6-15,85-76;16-21,73-68	x-x,86-86[BULt];x-x,75-74[BULt]	((((((..((((((((((.(((((&)))))-))))))))))--))))))	GUGAAACUGACAAUUUGAUAAGAA&UUCUU-UCAAAUUGUU--UUUCAU	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN4448_c0_g1_81_TPlot.pdf
TRINITY_DN444_c0_g1:1258	si_a762	TRINITY_DN444_c0_g1	1247	1266	1258	-29.70	-20.42	0.687542087542088	9.5	1-7,1266-1260;12-18,1256-1250;20-21,1248-1247	8-11,1259-1257[AILq];19-19,1249-1249[SIL]	((.(((((((...-(((((((&)))))))....))))))).))	GAUUCGAUCAUCU-CCCAAAG&CUUUGGGUUUUUGAUUGAUUC	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN444_c0_g1_1258_TPlot.pdf
TRINITY_DN444_c0_g1:1259	si_a761	TRINITY_DN444_c0_g1	1248	1267	1259	-30.10	-21.52	0.714950166112957	10.5	1-8,1267-1260;13-19,1256-1250	9-12,1259-1257[AILq];20-21,1249-1248[UP3]	..(((((((...-((((((((&))))))))....)))))))..	AUUCGAUCAUCU-CCCAAAGG&CCUUUGGGUUUUUGAUUGAUU	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN444_c0_g1_1259_TPlot.pdf
TRINITY_DN444_c1_g1:481	si_s16	TRINITY_DN444_c1_g1	470	490	481	-25.60	-16.98	0.66328125	8.5	1-10,490-481;14-20,477-471	11-13,480-478[SIL];21-21,470-470[UP3]	.(((((((...((((((((((&))))))))))...))))))).	GUGCAAUUUCGAUGGUAGUAA&UUAUUACUAUAUUGAUUGCAA	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN444_c1_g1_481_TPlot.pdf
TRINITY_DN444_c1_g1:482	si_s15	TRINITY_DN444_c1_g1	471	491	482	-25.60	-17.78	0.69453125	6.5	1-11,491-481;15-21,477-471	12-14,480-478[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	UGCAAUUUCGAUGGUAGUAAU&AUUAUUACUAUAUUGAUUGCA	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN444_c1_g1_482_TPlot.pdf
TRINITY_DN4451_c0_g1:1506	si_s64	TRINITY_DN4451_c0_g1	1495	1515	1506	-24.10	-15.68	0.650622406639004	9	1-6,1515-1510;10-20,1506-1496	7-9,1509-1507[SIL];21-21,1495-1495[UP3]	.(((((((((((...((((((&))))))...))))))))))).	CGAAAGAAUAGAUAAUGCUGA&UUAGCAACUUCUAUUUUUUUU	2	0.999999997154028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN4451_c0_g1_1506_TPlot.pdf
TRINITY_DN4451_c0_g1:1507	si_s63	TRINITY_DN4451_c0_g1	1496	1516	1507	-25.80	-16.98	0.658139534883721	8.5	1-7,1516-1510;11-21,1506-1496	8-10,1509-1507[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	GAAAGAAUAGAUAAUGCUGAU&GUUAGCAACUUCUAUUUUUUU	3	0.999999977095107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN4451_c0_g1_1507_TPlot.pdf
TRINITY_DN4451_c0_g1:2094	si_s818	TRINITY_DN4451_c0_g1	2084	2103	2094	-23.70	-16.00	0.675105485232067	10	1-14,2103-2090;16-17,2089-2088	15-15,x-x[BULq];18-21,2087-2084[UP3]	....((-((((((((((((((&)))))))))))))).))....	GAUGUC-UUGUUGGGAGGAGG&CCUUUUCUUAAUAAUGAAAAA	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN4451_c0_g1_2094_TPlot.pdf
TRINITY_DN4451_c0_g1:2101	si_s811	TRINITY_DN4451_c0_g1	2090	2110	2101	-26.40	-19.30	0.731060606060606	7.5	2-6,2109-2105;8-21,2103-2090	1-1,2110-2110[UP5];7-7,2104-2104[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UUGUUGGGAGGAGGAAAUGAU&UUCGUUACCUUUUCUUAAUAA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4451_c0_g1_2101_TPlot.pdf
TRINITY_DN4451_c0_g1:2836	si_s66	TRINITY_DN4451_c0_g1	2826	2845	2836	-26.30	-18.02	0.685171102661597	7	1-12,2845-2834;17-20,2830-2827	13-16,2833-2831[AILq];21-21,2826-2826[UP3]	.((((...-((((((((((((&))))))))))))....)))).	CGAGGUCC-GUAGAAGUUGCU&AGCAACUUCUAUUUUUUUUCU	3	0.999990058145084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN4451_c0_g1_2836_TPlot.pdf
TRINITY_DN4451_c0_g1:2837	si_s65	TRINITY_DN4451_c0_g1	2827	2846	2837	-26.00	-17.72	0.681538461538462	6.5	2-13,2845-2834;18-21,2830-2827	1-1,2846-2846[UP5];14-17,2833-2831[AILq]	((((...-((((((((((((.&.))))))))))))....))))	GAGGUCC-GUAGAAGUUGCUC&UAGCAACUUCUAUUUUUUUUC	3	0.999957295187837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN4451_c0_g1_2837_TPlot.pdf
TRINITY_DN4451_c0_g1:2952	si_s191	TRINITY_DN4451_c0_g1	2941	2961	2952	-26.60	-17.90	0.672932330827068	9	3-10,2959-2952;12-19,2950-2943	1-2,2961-2960[UP5];11-11,2951-2951[SIL];20-21,2942-2941[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	UUCAUUCCAAUGUAAUUGUAU&UAACGAUUAUUUUGGAAUGUA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN4451_c0_g1_2952_TPlot.pdf
TRINITY_DN4451_c0_g1:800	si_s352	TRINITY_DN4451_c0_g1	788	809	800	-27.20	-17.90	0.658088235294118	7.5	2-11,808-799;13-16,796-793;18-21,791-788	1-1,809-809[UP5];12-12,798-797[AILt];17-17,792-792[SIL]	((((.((((..((((((((((.&.))))))))))-.)))).))))	UUCAUUCUGGAUUCUUUGUCUA&GAGAUAAAGAA-AUAGAUUGAA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN4451_c0_g1_800_TPlot.pdf
TRINITY_DN4453_c0_g1:819	si_s898	TRINITY_DN4453_c0_g1	806	828	819	-30.70	-21.90	0.713355048859935	8.5	1-4,828-825;6-13,823-816;14-18,813-809	5-5,824-824[SIL];x-x,815-814[BULt];19-21,808-806[UP3]	...(((((..((((((((.((((&)))).))))))))--)))))...	UGAGAAGUUGUGAAGAGAUGGCC&GGCUUUCUCUUCA--AUUUCAAU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4453_c0_g1_819_TPlot.pdf
TRINITY_DN4454_c0_g1:3835	si_s307	TRINITY_DN4454_c0_g1	3823	3843	3835	-32.90	-21.70	0.659574468085106	9	3-5,3841-3839;8-16,3837-3829;17-21,3827-3823	1-2,3843-3842[UP5];6-7,3838-3838[AILq];x-x,3828-3828[BULt]	(((((.(((((((((.-(((..&..)))..)))))))))-)))))	AGAAGAGACAGAGUUG-CGCCA&UUGCGAAAAUUCUGUC-CUUCU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN4454_c0_g1_3835_TPlot.pdf
TRINITY_DN4456_c0_g1:2490	si_s94	TRINITY_DN4456_c0_g1	2476	2499	2490	-35.50	-23.20	0.653521126760563	8.5	1-8,2499-2492;10-13,2490-2487;14-18,2483-2479	9-9,2491-2491[SIL];x-x,2486-2484[BULt];19-21,2478-2476[UP3]	...(((((...((((.((((((((&)))))))).))))---)))))...	CCCUCCGAAGAGGCGCAGAAGAAG&CUUCUUCUUCGCU---UCGGAUUG	3	0.999999998831755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN4456_c0_g1_2490_TPlot.pdf
TRINITY_DN4456_c0_g1:2497	si_s87	TRINITY_DN4456_c0_g1	2486	2506	2497	-32.90	-25.70	0.781155015197568	6.5	3-15,2504-2492;17-21,2490-2486	1-2,2506-2505[UP5];16-16,2491-2491[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGGCGCAGAAGAAGAGGGGCC&UUCCUUUCUUCUUCUUCGCUU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4456_c0_g1_2497_TPlot.pdf
TRINITY_DN4456_c0_g1:3347	si_a714	TRINITY_DN4456_c0_g1	3336	3357	3347	-31.90	-22.10	0.692789968652038	6.5	2-2,3356-3356;3-9,3354-3348;11-20,3346-3337	1-1,3357-3357[UP5];x-x,3355-3355[BULt];10-10,3347-3347[SIL];21-21,3336-3336[UP3]	.((((((((((.(((((((.(.&.)-))))))).)))))))))).	UCGAGUGACGAGUAUUUUGCGG&UC-CAAAAUAAUCGUUACUCGG	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a714_TRINITY_DN4456_c0_g1_3347_TPlot.pdf
TRINITY_DN4456_c0_g1:3708	si_a637	TRINITY_DN4456_c0_g1	3696	3717	3708	-25.80	-17.00	0.65891472868217	8	1-13,3717-3705;15-16,3702-3701	14-14,3704-3703[AILt];17-21,3700-3696[UP3]	.....((..(((((((((((((&)))))))))))))-.)).....	CUACAACGGCAAGAAAAUCGAC&GUCGAUUUUUUUG-AGUAAUAU	2	0.999998948655366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4456_c0_g1_3708_TPlot.pdf
TRINITY_DN4456_c0_g1:3709	si_a636	TRINITY_DN4456_c0_g1	3697	3718	3709	-26.30	-18.00	0.684410646387833	7	1-14,3718-3705;16-17,3702-3701	15-15,3704-3703[AILt];18-21,3700-3697[UP3]	....((..((((((((((((((&))))))))))))))-.))....	UACAACGGCAAGAAAAUCGACA&UGUCGAUUUUUUUG-AGUAAUA	2	0.999392074706159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4456_c0_g1_3709_TPlot.pdf
TRINITY_DN4456_c0_g1:3710	si_a635	TRINITY_DN4456_c0_g1	3698	3719	3710	-26.10	-18.00	0.689655172413793	7	2-15,3718-3705;17-18,3702-3701	1-1,3719-3719[UP5];16-16,3704-3703[AILt];19-21,3700-3698[UP3]	...((..((((((((((((((.&.))))))))))))))-.))...	ACAACGGCAAGAAAAUCGACAA&AUGUCGAUUUUUUUG-AGUAAU	3	0.999997731878951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4456_c0_g1_3710_TPlot.pdf
TRINITY_DN4456_c0_g1:3712	si_a633	TRINITY_DN4456_c0_g1	3700	3721	3712	-26.40	-18.00	0.681818181818182	8.5	4-17,3718-3705;19-20,3702-3701	1-3,3721-3719[UP5];18-18,3704-3703[AILt];21-21,3700-3700[UP3]	.((..((((((((((((((...&...))))))))))))))-.)).	AACGGCAAGAAAAUCGACAAGA&UUAUGUCGAUUUUUUUG-AGUA	2	0.999775391228409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4456_c0_g1_3712_TPlot.pdf
TRINITY_DN4456_c0_g1:3713	si_a632	TRINITY_DN4456_c0_g1	3701	3722	3713	-26.10	-17.70	0.67816091954023	9.5	5-18,3718-3705;20-21,3702-3701	1-4,3722-3719[UP5];19-19,3704-3703[AILt]	((..((((((((((((((....&....))))))))))))))-.))	ACGGCAAGAAAAUCGACAAGAG&AUUAUGUCGAUUUUUUUG-AGU	4	0.999997885333129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4456_c0_g1_3713_TPlot.pdf
TRINITY_DN4456_c0_g1:3716	si_a629	TRINITY_DN4456_c0_g1	3705	3724	3716	-26.30	-19.00	0.722433460076046	6.5	1-3,3724-3722;5-6,3721-3720;8-21,3718-3705	4-4,x-x[BULq];7-7,3719-3719[SIL]	((((((((((((((.((-(((&))).)).))))))))))))))	CAAGAAAAUCGACAAGA-GCG&CGUAUUAUGUCGAUUUUUUUG	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN4456_c0_g1_3716_TPlot.pdf
TRINITY_DN4456_c0_g1:3801	si_a224	TRINITY_DN4456_c0_g1	3788	3811	3801	-27.40	-17.90	0.653284671532847	9.5	3-6,3809-3806;7-18,3804-3793;19-21,3790-3788	1-2,3811-3810[UP5];x-x,3805-3805[BULt];x-x,3792-3791[BULt]	(((..((((((((((((.((((..&..))))-))))))))))))--)))	UGACCUUAUGGAAGCGUCGAGUGG&AAACUC-AUGUUUCUAUAA--UCA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN4456_c0_g1_3801_TPlot.pdf
TRINITY_DN4456_c0_g1:3804	si_a221	TRINITY_DN4456_c0_g1	3793	3814	3804	-25.20	-17.30	0.686507936507937	13	6-9,3809-3806;10-21,3804-3793	1-5,3814-3810[UP5];x-x,3805-3805[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	UUAUGGAAGCGUCGAGUGGAGA&AUUAAACUC-AUGUUUCUAUAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN4456_c0_g1_3804_TPlot.pdf
TRINITY_DN4456_c0_g1:3824	si_a147	TRINITY_DN4456_c0_g1	3812	3833	3824	-30.40	-19.90	0.654605263157895	9.5	1-11,3833-3823;12-16,3821-3817;18-20,3815-3813	x-x,3822-3822[BULt];17-17,3816-3816[SIL];21-21,3812-3812[UP3]	.(((.(((((.(((((((((((&)))))))))))-))))).))).	AGACGUUGAGCGCGAUGACGAU&AUCGUUGUUGU-UUUAAGGUCA	2	0.999972245247358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN4456_c0_g1_3824_TPlot.pdf
TRINITY_DN4456_c0_g1:3825	si_a146	TRINITY_DN4456_c0_g1	3813	3834	3825	-29.70	-19.60	0.65993265993266	9	2-12,3833-3823;13-17,3821-3817;19-21,3815-3813	1-1,3834-3834[UP5];x-x,3822-3822[BULt];18-18,3816-3816[SIL]	(((.(((((.(((((((((((.&.)))))))))))-))))).)))	GACGUUGAGCGCGAUGACGAUA&AAUCGUUGUUGU-UUUAAGGUC	2	0.999849180564006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN4456_c0_g1_3825_TPlot.pdf
TRINITY_DN4456_c0_g1:4049	si_s887	TRINITY_DN4456_c0_g1	4047	4058	4049	-26.80	-17.60	0.656716417910448	1	11-21,4057-4047	10-10,4058-4058[SIL]	(((((((((((.&.)))))))))))	GGAGAAAGCCUU&AAAAAUAAAUAG	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4456_c0_g1_4049_TPlot.pdf
TRINITY_DN4456_c0_g1:4118	si_s803	TRINITY_DN4456_c0_g1	4107	4127	4118	-26.00	-17.40	0.669230769230769	16	7-17,4121-4111	1-6,4127-4122[UP5];18-21,4110-4107[UP3]	....(((((((((((......&......)))))))))))....	CUCCGGUAACGAGGAAGCGGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999992888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN4456_c0_g1_4118_TPlot.pdf
TRINITY_DN4456_c0_g1:4122	si_s799	TRINITY_DN4456_c0_g1	4111	4133	4122	-30.00	-20.30	0.676666666666667	10.5	1-4,4133-4130;6-9,4128-4125;11-21,4121-4111	5-5,4129-4129[SIL];10-10,4124-4122[AILt]	(((((((((((...((((.((((&)))).))))--.)))))))))))	GGUAACGAGGAAGCGGAAGACGA&UCGUAUUUU--AUCUUCGUUACC	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN4456_c0_g1_4122_TPlot.pdf
TRINITY_DN4456_c0_g1:4123	si_a502	TRINITY_DN4456_c0_g1	4112	4131	4123	-32.10	-22.20	0.691588785046729	8.5	1-8,4131-4124;10-17,4123-4116	9-9,x-x[BULq];18-21,4115-4112[UP3]	....((((((((-((((((((&)))))))).))))))))....	GUAACGAGGAAG-CGGAAGAC&GUUUUUCGUCUUCCUUGGAAU	2	0.999815947376409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN4456_c0_g1_4123_TPlot.pdf
TRINITY_DN4456_c0_g1:4125	si_a499	TRINITY_DN4456_c0_g1	4115	4134	4125	-35.20	-25.90	0.735795454545454	6.5	2-11,4133-4124;13-20,4123-4116	1-1,4134-4134[UP5];12-12,x-x[BULq];21-21,4115-4115[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	ACGAGGAAG-CGGAAGACGAG&GUCGUUUUUCGUCUUCCUUGG	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4456_c0_g1_4125_TPlot.pdf
TRINITY_DN4456_c0_g1:4126	si_a498	TRINITY_DN4456_c0_g1	4116	4135	4126	-33.50	-25.90	0.773134328358209	5.5	1-1,4135-4135;3-12,4133-4124;14-21,4123-4116	2-2,4134-4134[SIL];13-13,x-x[BULq]	((((((((-((((((((((.(&).)))))))))).))))))))	CGAGGAAG-CGGAAGACGAGA&UGUCGUUUUUCGUCUUCCUUG	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4456_c0_g1_4126_TPlot.pdf
TRINITY_DN4456_c0_g1:4401	si_a492	TRINITY_DN4456_c0_g1	4392	4410	4401	-30.20	-19.90	0.658940397350993	5.5	1-4,4410-4407;6-13,4405-4398;16-21,4397-4392	5-5,4406-4406[SIL];14-15,x-x[BULq]	((((((--((((((((.((((&)))).))))))))..))))))	AGACGA--GAUGACAUUUUCU&AGAAUAUGUCGUUUUUCGUCU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN4456_c0_g1_4401_TPlot.pdf
TRINITY_DN4456_c0_g1:4402	si_a491	TRINITY_DN4456_c0_g1	4393	4411	4402	-29.90	-19.70	0.658862876254181	5.5	1-5,4411-4407;7-14,4405-4398;17-21,4397-4393	6-6,4406-4406[SIL];15-16,x-x[BULq]	(((((--((((((((.(((((&))))).))))))))..)))))	GACGA--GAUGACAUUUUCUA&UAGAAUAUGUCGUUUUUCGUC	2	0.986849030460239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN4456_c0_g1_4402_TPlot.pdf
TRINITY_DN4456_c0_g1:4678	si_a819	TRINITY_DN4456_c0_g1	4666	4687	4678	-28.90	-19.30	0.667820069204152	7	1-5,4687-4683;7-12,4681-4676;13-18,4674-4669	6-6,4682-4682[SIL];x-x,4675-4675[BULt];19-21,4668-4666[UP3]	...((((((.((((((.(((((&))))).))))))-))))))...	UUCUCUUUCUCUUUCUCCUUCU&AGAAGAAGAAAG-GAAAGAAAA	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN4456_c0_g1_4678_TPlot.pdf
TRINITY_DN4456_c0_g1:538	si_a64	TRINITY_DN4456_c0_g1	527	548	538	-29.40	-19.30	0.656462585034014	10	1-9,548-540;10-17,538-531;19-19,529-529	x-x,539-539[BULt];18-18,530-530[SIL];20-21,528-527[UP3]	..(.((((((((.(((((((((&)))))))))-)))))))).)..	GCGGAGUUUGGGCGGGAGCGAG&CUCGCUUCU-UUCAAAUUGUUU	4	0.999999594442019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN4456_c0_g1_538_TPlot.pdf
TRINITY_DN445_c0_g1:11601	si_a835	TRINITY_DN445_c0_g1	11590	11610	11601	-26.00	-17.40	0.669230769230769	5	2-19,11609-11592	1-1,11610-11610[UP5];20-21,11591-11590[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUGCGAUUUUUAUUUUUUUUG&GAAAAAAAAUAGAAGUUGCUA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN445_c0_g1_11601_TPlot.pdf
TRINITY_DN445_c0_g1:11603	si_a833	TRINITY_DN445_c0_g1	11592	11612	11603	-25.60	-17.60	0.6875	4.5	2-2,11611-11611;4-21,11609-11592	1-1,11612-11612[UP5];3-3,11610-11610[SIL]	((((((((((((((((((.(.&.).))))))))))))))))))	GCGAUUUUUAUUUUUUUUGUG&AAGAAAAAAAAUAGAAGUUGC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN445_c0_g1_11603_TPlot.pdf
TRINITY_DN445_c0_g1:12547	si_a658	TRINITY_DN445_c0_g1	12536	12557	12547	-33.40	-22.10	0.661676646706587	7.5	2-4,12556-12554;5-16,12552-12541;18-19,12539-12538	1-1,12557-12557[UP5];x-x,12553-12553[BULt];17-17,12540-12540[SIL];20-21,12537-12536[UP3]	..((.((((((((((((.(((.&.)))-)))))))))))).))..	GUUCUGUAGGCAUUUCCUUGAG&AUCG-GGAAAUGCCUAUUGAUU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN445_c0_g1_12547_TPlot.pdf
TRINITY_DN445_c0_g1:12548	si_a657	TRINITY_DN445_c0_g1	12537	12558	12548	-33.80	-22.10	0.653846153846154	8.5	3-5,12556-12554;6-17,12552-12541;19-20,12539-12538	1-2,12558-12557[UP5];x-x,12553-12553[BULt];18-18,12540-12540[SIL];21-21,12537-12537[UP3]	.((.((((((((((((.(((..&..)))-)))))))))))).)).	UUCUGUAGGCAUUUCCUUGAGU&UAUCG-GGAAAUGCCUAUUGAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN445_c0_g1_12548_TPlot.pdf
TRINITY_DN445_c0_g1:12549	si_a656	TRINITY_DN445_c0_g1	12538	12559	12549	-33.80	-22.00	0.650887573964497	9.5	4-6,12556-12554;7-18,12552-12541;20-21,12539-12538	1-3,12559-12557[UP5];x-x,12553-12553[BULt];19-19,12540-12540[SIL]	((.((((((((((((.(((...&...)))-)))))))))))).))	UCUGUAGGCAUUUCCUUGAGUG&AUAUCG-GGAAAUGCCUAUUGA	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN445_c0_g1_12549_TPlot.pdf
TRINITY_DN445_c0_g1:12825	si_a427	TRINITY_DN445_c0_g1	12814	12834	12825	-31.80	-20.70	0.650943396226415	16.5	7-10,12828-12825;13-20,12822-12815	1-6,12834-12829[UP5];11-12,12824-12823[SIL];21-21,12814-12814[UP3]	.((((((((..((((......&......))))..)))))))).	CUCCAGCGGUGCCUAACCAAG&UAAAUAUAGGAUCCGUUGGAU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN445_c0_g1_12825_TPlot.pdf
TRINITY_DN445_c0_g1:13112	si_s817	TRINITY_DN445_c0_g1	13101	13121	13112	-24.50	-16.10	0.657142857142857	8	2-14,13120-13108	1-1,13121-13121[UP5];15-21,13107-13101[UP3]	.......(((((((((((((.&.))))))))))))).......	AAUCCCCUAUUAAGAAAAGGG&ACCUUUUCUUAAUAAUGAAAA	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN445_c0_g1_13112_TPlot.pdf
TRINITY_DN445_c0_g1:1384	si_s568	TRINITY_DN445_c0_g1	1373	1393	1384	-30.60	-19.90	0.650326797385621	11	2-9,1392-1385;11-14,1383-1380	1-1,1393-1393[UP5];10-10,1384-1384[SIL];15-21,1379-1373[UP3]	.......((((.((((((((.&.)))))))).)))).......	GCGACAGUCCUAGUCCCGAGG&UUUCGGGACAAGGAAUAAAAA	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN445_c0_g1_1384_TPlot.pdf
TRINITY_DN445_c0_g1:1385	si_s567	TRINITY_DN445_c0_g1	1374	1394	1385	-30.60	-21.30	0.696078431372549	10	1-10,1394-1385;12-15,1383-1380	11-11,1384-1384[SIL];16-21,1379-1374[UP3]	......((((.((((((((((&)))))))))).))))......	CGACAGUCCUAGUCCCGAGGA&UUUUCGGGACAAGGAAUAAAA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN445_c0_g1_1385_TPlot.pdf
TRINITY_DN445_c0_g1:1941	si_s312	TRINITY_DN445_c0_g1	1930	1950	1941	-29.00	-19.30	0.66551724137931	8.5	3-5,1948-1946;7-13,1944-1938;15-20,1936-1931	1-2,1950-1949[UP5];6-6,1945-1945[SIL];14-14,1937-1937[SIL];21-21,1930-1930[UP3]	.((((((.(((((((.(((..&..))).))))))).)))))).	CGACAGGUGGGACAGCAUUAC&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999962595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN445_c0_g1_1941_TPlot.pdf
TRINITY_DN445_c0_g1:3909	si_a429	TRINITY_DN445_c0_g1	3898	3918	3909	-32.00	-21.30	0.665625	16.5	8-19,3911-3900	1-7,3918-3912[UP5];20-21,3899-3898[UP3]	..((((((((((((.......&.......))))))))))))..	CAGUCCAACGGGUCGGUGAUC&AAUAUAGGAUCCGUUGGAUAU	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN445_c0_g1_3909_TPlot.pdf
TRINITY_DN445_c0_g1:3910	si_a428	TRINITY_DN445_c0_g1	3899	3919	3910	-31.80	-21.30	0.669811320754717	17.5	9-20,3911-3900	1-8,3919-3912[UP5];21-21,3899-3899[UP3]	.((((((((((((........&........)))))))))))).	AGUCCAACGGGUCGGUGAUCG&AAAUAUAGGAUCCGUUGGAUA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN445_c0_g1_3910_TPlot.pdf
TRINITY_DN445_c0_g1:4175	si_s100	TRINITY_DN445_c0_g1	4161	4185	4175	-33.70	-22.70	0.673590504451039	12	1-3,4185-4183;4-12,4181-4173;13-17,4169-4165	x-x,4182-4182[BULt];x-x,4172-4170[BULt];18-21,4164-4161[UP3]	....(((((...(((((((((.(((&)))-)))))))))---)))))....	AUGGUCCAAGUCUCCGAAGCGUAAG&CUU-CGCUUCGGA---UUGGAAAAU	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN445_c0_g1_4175_TPlot.pdf
TRINITY_DN445_c0_g1:4176	si_s99	TRINITY_DN445_c0_g1	4162	4186	4176	-34.60	-24.30	0.702312138728324	8	1-4,4186-4183;5-13,4181-4173;14-18,4169-4165	x-x,4182-4182[BULt];x-x,4172-4170[BULt];19-21,4164-4162[UP3]	...(((((...(((((((((.((((&))))-)))))))))---)))))...	UGGUCCAAGUCUCCGAAGCGUAAGA&UCUU-CGCUUCGGA---UUGGAAAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN445_c0_g1_4176_TPlot.pdf
TRINITY_DN445_c0_g1:4178	si_s97	TRINITY_DN445_c0_g1	4164	4188	4178	-36.30	-25.40	0.699724517906336	7	2-6,4187-4183;7-15,4181-4173;16-20,4169-4165	1-1,4188-4188[UP5];x-x,4182-4182[BULt];x-x,4172-4170[BULt];21-21,4164-4164[UP3]	.(((((...(((((((((.(((((.&.)))))-)))))))))---))))).	GUCCAAGUCUCCGAAGCGUAAGAAA&CUUCUU-CGCUUCGGA---UUGGAA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN445_c0_g1_4178_TPlot.pdf
TRINITY_DN445_c0_g1:5753	si_s13	TRINITY_DN445_c0_g1	5742	5762	5753	-22.90	-16.00	0.698689956331878	7	1-11,5762-5752;13-19,5750-5744	12-12,5751-5751[SIL];20-21,5743-5742[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AUAUCAAUACAGUAAUGGUGA&UUAUUAUUACUAUAUUGAUUG	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN445_c0_g1_5753_TPlot.pdf
TRINITY_DN445_c0_g1:5917	si_a627	TRINITY_DN445_c0_g1	5906	5925	5917	-29.50	-19.80	0.671186440677966	9	1-7,5925-5919;10-13,5917-5914;15-18,5912-5909	8-9,5918-5918[AILq];14-14,5913-5913[SIL];19-21,5908-5906[UP3]	...((((.((((.-(((((((&)))))))..)))).))))...	AUCAAAUGGACAG-GUACGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN445_c0_g1_5917_TPlot.pdf
TRINITY_DN445_c0_g1:5918	si_a626	TRINITY_DN445_c0_g1	5907	5926	5918	-30.20	-19.90	0.658940397350993	9	2-8,5925-5919;11-14,5917-5914;16-19,5912-5909	1-1,5926-5926[UP5];9-10,5918-5918[AILq];15-15,5913-5913[SIL];20-21,5908-5907[UP3]	..((((.((((.-(((((((.&.)))))))..)))).))))..	UCAAAUGGACAG-GUACGCCA&AGGCGUAUUAUGUCGAUUUUU	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN445_c0_g1_5918_TPlot.pdf
TRINITY_DN445_c0_g1:9603	si_s398	TRINITY_DN445_c0_g1	9592	9612	9603	-32.10	-22.20	0.691588785046729	7	2-19,9611-9594	1-1,9612-9612[UP5];20-21,9593-9592[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GGUUUUCGUUUUCUUUGGGGC&AUUCCAAGGAAGACGAAAAAC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s398_TRINITY_DN445_c0_g1_9603_TPlot.pdf
TRINITY_DN445_c15_g1:310	si_a148	TRINITY_DN445_c15_g1	299	319	310	-30.30	-23.50	0.775577557755776	6.5	1-2,319-318;4-16,316-304;18-20,302-300	3-3,317-317[SIL];17-17,303-303[SIL];21-21,299-299[UP3]	.(((.(((((((((((((.((&)).))))))))))))).))).	GUGAGCUUGAGACAACAGGGA&UCGUUGUUGUUUUAAGGUCAA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN445_c15_g1_310_TPlot.pdf
TRINITY_DN445_c15_g1:345	si_a66	TRINITY_DN445_c15_g1	335	354	345	-26.70	-18.10	0.677902621722847	7.5	2-11,353-344;14-19,342-337	1-1,354-354[UP5];12-13,343-343[AILq];20-21,336-335[UP3]	..((((((.-((((((((((.&.))))))))))..))))))..	CCGAGCGAC-UGAAAGAAGCA&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999660191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN445_c15_g1_345_TPlot.pdf
TRINITY_DN445_c2_g1:1120	si_a545	TRINITY_DN445_c2_g1	1109	1129	1120	-28.10	-20.10	0.715302491103203	8	1-11,1129-1119;14-19,1116-1111	12-13,1118-1117[SIL];20-21,1110-1109[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	UCGAAGGACGAGAUUGAGCUG&CGGUUCAAUCUAUUUCUUUAU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN445_c2_g1_1120_TPlot.pdf
TRINITY_DN445_c2_g1:1565	si_a361	TRINITY_DN445_c2_g1	1554	1574	1565	-29.00	-18.90	0.651724137931034	8.5	1-14,1574-1561	15-21,1560-1554[UP3]	.......((((((((((((((&)))))))))))))).......	AUACUGCCUGAUCAAGAUAGA&UCUAUUUUGAUCGGAUCAAAA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN445_c2_g1_1565_TPlot.pdf
TRINITY_DN445_c2_g1:1570	si_a356	TRINITY_DN445_c2_g1	1559	1579	1570	-26.90	-19.60	0.728624535315985	10.5	5-19,1575-1561	1-4,1579-1576[UP5];20-21,1560-1559[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCCUGAUCAAGAUAGAACGAC&UUAAUUCUAUUUUGAUCGGAU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN445_c2_g1_1570_TPlot.pdf
TRINITY_DN445_c2_g1:1573	si_a353	TRINITY_DN445_c2_g1	1562	1582	1573	-24.00	-16.20	0.675	14	8-21,1575-1562	1-7,1582-1576[UP5]	((((((((((((((.......&.......))))))))))))))	UGAUCAAGAUAGAACGACAUG&AUAUUAAUUCUAUUUUGAUCG	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN445_c2_g1_1573_TPlot.pdf
TRINITY_DN445_c2_g1:1574	si_a352	TRINITY_DN445_c2_g1	1563	1583	1574	-22.50	-15.40	0.684444444444444	15.5	9-21,1575-1563	1-8,1583-1576[UP5]	(((((((((((((........&........)))))))))))))	GAUCAAGAUAGAACGACAUGG&AAUAUUAAUUCUAUUUUGAUC	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN445_c2_g1_1574_TPlot.pdf
TRINITY_DN445_c2_g1:1589	si_a71	TRINITY_DN445_c2_g1	1578	1596	1589	-23.30	-15.20	0.652360515021459	8	1-7,1596-1590;10-19,1589-1580	8-9,x-x[BULq];20-21,1579-1578[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	ACAUGGAAGACA--UUGGAAG&CUUUCAAAUUGUUUUUCAUUA	2	0.999999994068795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN445_c2_g1_1589_TPlot.pdf
TRINITY_DN4461_c0_g1:1909	si_a628	TRINITY_DN4461_c0_g1	1898	1917	1909	-27.10	-19.10	0.70479704797048	7	1-3,1917-1915;5-18,1914-1901	4-4,x-x[BULq];19-21,1900-1898[UP3]	...((((((((((((((-(((&))).))))))))))))))...	GACAAAAUCGAUAUGAU-CGC&GCGUAUUAUGUCGAUUUUUUU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN4461_c0_g1_1909_TPlot.pdf
TRINITY_DN4461_c0_g1:5571	si_a766	TRINITY_DN4461_c0_g1	5560	5580	5571	-30.50	-20.40	0.668852459016393	8.5	1-5,5580-5576;8-12,5573-5569;15-20,5566-5561	6-7,5575-5574[SIL];13-14,5568-5567[SIL];21-21,5560-5560[UP3]	.((((((..(((((..(((((&)))))..)))))..)))))).	CGUUGGAAGAAUCAUUGACCC&GGGUUUUUGAUUGAUUCAACU	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN4461_c0_g1_5571_TPlot.pdf
TRINITY_DN4461_c0_g1:6702	si_a605	TRINITY_DN4461_c0_g1	6692	6711	6702	-32.20	-21.00	0.652173913043478	12	6-14,6706-6698;16-20,6697-6693	1-5,6711-6707[UP5];15-15,x-x[BULq];21-21,6692-6692[UP3]	.(((((-(((((((((.....&.....))))))))).))))).	UGUCGA-UGGGAUUGCAGACU&UUUUCGCAAUUCCAAUCGACU	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN4461_c0_g1_6702_TPlot.pdf
TRINITY_DN4461_c0_g1:6703	si_a604	TRINITY_DN4461_c0_g1	6693	6712	6703	-31.60	-20.60	0.651898734177215	13	7-15,6706-6698;17-21,6697-6693	1-6,6712-6707[UP5];16-16,x-x[BULq]	(((((-(((((((((......&......))))))))).)))))	GUCGA-UGGGAUUGCAGACUC&AUUUUCGCAAUUCCAAUCGAC	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN4461_c0_g1_6703_TPlot.pdf
TRINITY_DN4461_c0_g1:6886	si_a504	TRINITY_DN4461_c0_g1	6875	6895	6886	-32.90	-23.10	0.702127659574468	10	1-8,6895-6888;11-17,6885-6879	9-10,6887-6886[SIL];18-21,6878-6875[UP3]	....(((((((..((((((((&))))))))..)))))))....	CACCUCCAAGGUUGACGGAGA&UUUUCGUCUUCCUUGGAAUGU	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN4461_c0_g1_6886_TPlot.pdf
TRINITY_DN4461_c0_g1:6889	si_a501	TRINITY_DN4461_c0_g1	6878	6898	6889	-33.50	-25.60	0.764179104477612	8	1-1,6898-6898;3-11,6896-6888;14-20,6885-6879	2-2,6897-6897[SIL];12-13,6887-6886[SIL];21-21,6878-6878[UP3]	.(((((((..(((((((((.(&).)))))))))..))))))).	CUCCAAGGUUGACGGAGAAGG&CGUUUUUCGUCUUCCUUGGAA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4461_c0_g1_6889_TPlot.pdf
TRINITY_DN4461_c0_g1:6892	si_a498	TRINITY_DN4461_c0_g1	6881	6905	6892	-33.50	-22.40	0.66865671641791	15	2-6,6904-6900;7-14,6895-6888;17-21,6885-6881	1-1,6905-6905[UP5];x-x,6899-6896[BULt];15-16,6887-6886[SIL]	(((((..((((((((....(((((.&.)))))----))))))))..)))))	CAAGGUUGACGGAGAAGGCGCGGCC&UGUCGU----UUUUCGUCUUCCUUG	4	0.999999999989358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4461_c0_g1_6892_TPlot.pdf
TRINITY_DN4461_c0_g1:7169	si_a361	TRINITY_DN4461_c0_g1	7158	7178	7169	-29.00	-19.10	0.658620689655173	7.5	1-15,7178-7164;18-21,7161-7158	16-17,7163-7162[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UUUUUUUCUGGUCGGAGUGGA&UCUAUUUUGAUCGGAUCAAAA	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN4461_c0_g1_7169_TPlot.pdf
TRINITY_DN4461_c0_g1:7175	si_a355	TRINITY_DN4461_c0_g1	7164	7184	7175	-26.80	-18.20	0.67910447761194	15	7-21,7178-7164	1-6,7184-7179[UP5]	(((((((((((((((......&......)))))))))))))))	UCUGGUCGGAGUGGACGCGGG&AUUAAUUCUAUUUUGAUCGGA	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN4461_c0_g1_7175_TPlot.pdf
TRINITY_DN4461_c0_g1:7180	si_s383	TRINITY_DN4461_c0_g1	7170	7189	7180	-40.90	-29.32	0.716870415647922	9.5	1-10,7189-7180;15-20,7176-7171	11-14,7179-7177[AILq];21-21,7170-7170[UP3]	.((((((...-((((((((((&))))))))))....)))))).	CGGAGUGGAC-GCGGGCGCGC&GCGUGUCCGCCUUACAUUCCA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s383_TRINITY_DN4461_c0_g1_7180_TPlot.pdf
TRINITY_DN4461_c0_g1:7181	si_s382	TRINITY_DN4461_c0_g1	7171	7190	7181	-41.70	-29.02	0.695923261390887	8.5	2-11,7189-7180;16-21,7176-7171	1-1,7190-7190[UP5];12-15,7179-7177[AILq]	((((((...-((((((((((.&.))))))))))....))))))	GGAGUGGAC-GCGGGCGCGCA&CGCGUGUCCGCCUUACAUUCC	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s382_TRINITY_DN4461_c0_g1_7181_TPlot.pdf
TRINITY_DN4462_c0_g1:473	si_s419	TRINITY_DN4462_c0_g1	463	482	473	-25.60	-17.40	0.6796875	6	1-11,482-472;13-15,471-469;17-21,467-463	12-12,x-x[BULq];16-16,468-468[SIL]	(((((.(((-(((((((((((&))))))))))).))).)))))	UAUUGCUAU-UGGAGUGUGUC&GACAUAUUCUAUAUAACAAUA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s419_TRINITY_DN4462_c0_g1_473_TPlot.pdf
TRINITY_DN4463_c0_g1:2008	si_s75	TRINITY_DN4463_c0_g1	1997	2017	2008	-24.00	-17.30	0.720833333333333	11.5	4-19,2014-1999	1-3,2017-2015[UP5];20-21,1998-1997[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUGAAGGGGAGAGAGAGAUGC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4463_c0_g1_2008_TPlot.pdf
TRINITY_DN4463_c1_g1:4663	si_s645	TRINITY_DN4463_c1_g1	4653	4671	4663	-38.10	-24.80	0.650918635170604	7.5	1-8,4671-4664;10-11,4663-4662;13-19,4661-4655	9-9,x-x[BULq];12-12,x-x[BULq];20-21,4654-4653[UP3]	..(((((((-((-((((((((&)))))))).)).)))))))..	CAGAUUGUG-CG-GGGCGAAC&GUUUGCCCUCGAUACAAUCGG	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s645_TRINITY_DN4463_c1_g1_4663_TPlot.pdf
TRINITY_DN44677_c0_g1:4419	si_a341	TRINITY_DN44677_c0_g1	4408	4428	4419	-27.80	-18.20	0.654676258992806	13	1-11,4428-4418	12-21,4417-4408[UP3]	..........(((((((((((&)))))))))))..........	UAUGAAGCUCUUCGGGGCGAG&CUUGUCCCGAAAAUAUUAAUU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN44677_c0_g1_4419_TPlot.pdf
TRINITY_DN44677_c0_g1:4425	si_a58	TRINITY_DN44677_c0_g1	4408	4434	4425	-34.60	-25.10	0.725433526011561	11	1-14,4434-4421;15-19,4414-4410	x-x,4420-4415[BULt];20-21,4409-4408[UP3]	..(((((......((((((((((((((&))))))))))))))------)))))..	UAUGAAGCUCUUCGGGGCGAGUCGGCU&AGUCGACUCGCUUC------UUUCAAA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN44677_c0_g1_4425_TPlot.pdf
TRINITY_DN44677_c0_g1:4429	si_a54	TRINITY_DN44677_c0_g1	4418	4438	4429	-37.30	-25.50	0.683646112600536	12	5-18,4434-4421	1-4,4438-4435[UP5];19-21,4420-4418[UP3]	...((((((((((((((....&....))))))))))))))...	UUCGGGGCGAGUCGGCUGGUC&UAGGAGUCGACUCGCUUCUUU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN44677_c0_g1_4429_TPlot.pdf
TRINITY_DN44677_c0_g1:4432	si_a51	TRINITY_DN44677_c0_g1	4421	4444	4432	-41.10	-27.40	0.666666666666667	13	2-5,4443-4440;7-8,4438-4437;9-21,4433-4421	1-1,4444-4444[UP5];6-6,4439-4439[SIL];x-x,4436-4434[BULt]	(((((((((((((...((.((((.&.)))).))---)))))))))))))	GGGGCGAGUCGGCUGGUCGUGGGG&GUCUAGGA---GUCGACUCGCUUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN44677_c0_g1_4432_TPlot.pdf
TRINITY_DN44677_c0_g1:4433	si_a50	TRINITY_DN44677_c0_g1	4422	4448	4433	-41.50	-28.42	0.684819277108434	21	1-5,4448-4444;9-21,4434-4422	6-8,4443-4435[AILt]	(((((((((((((.........(((((&)))))------...)))))))))))))	GGGCGAGUCGGCUGGUCGUGGGGGACC&GGUCU------AGGAGUCGACUCGCUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN44677_c0_g1_4433_TPlot.pdf
TRINITY_DN44681_c0_g1:1877	si_s71	TRINITY_DN44681_c0_g1	1866	1888	1877	-25.70	-19.18	0.746303501945525	13.5	1-7,1888-1882;10-20,1877-1867	8-9,1881-1878[AILt];21-21,1866-1866[UP3]	.(((((((((((....(((((((&)))))))--..))))))))))).	UGGAGAGAAGGGUCCCGUAGAAG&CUUCUAU--UUUUUUUCUUUCCU	4	0.999999501458199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN44681_c0_g1_1877_TPlot.pdf
TRINITY_DN44689_c0_g1:271	si_a445	TRINITY_DN44689_c0_g1	260	280	271	-27.30	-18.50	0.677655677655678	10	5-20,276-261	1-4,280-277[UP5];21-21,260-260[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAACAGCGAUUAUUUCAGCCC&GAUAUGAGAUAAUUGUUGUUA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN44689_c0_g1_271_TPlot.pdf
TRINITY_DN44689_c0_g1:498	si_s605	TRINITY_DN44689_c0_g1	487	506	498	-27.50	-18.00	0.654545454545455	7	2-3,505-504;5-15,503-493;17-21,491-487	1-1,506-506[UP5];4-4,x-x[BULq];16-16,492-492[SIL]	(((((.(((((((((((-((.&.)).))))))))))).)))))	GGAUUGGGAGGAGAUUC-CUG&AAGCGAAUCUUUUUUAAAUCC	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN44689_c0_g1_498_TPlot.pdf
TRINITY_DN44690_c0_g1:1568	si_s612	TRINITY_DN44690_c0_g1	1557	1579	1568	-28.20	-20.80	0.73758865248227	8	1-4,1579-1576;5-16,1573-1562;18-21,1560-1557	x-x,1575-1574[BULt];17-17,1561-1561[SIL]	((((.((((((((((((..((((&))))--)))))))))))).))))	AUCGGUUGGAUUUGAGAUUAGGA&UCUU--UUUUAAAUCCAAGCGAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN44690_c0_g1_1568_TPlot.pdf
TRINITY_DN44692_c0_g1:1058	si_a386	TRINITY_DN44692_c0_g1	1048	1066	1058	-24.80	-16.20	0.653225806451613	5	1-8,1066-1059;10-13,1058-1055;15-20,1054-1049	9-9,x-x[BULq];14-14,x-x[BULq];21-21,1048-1048[UP3]	.((((((-((((-((((((((&)))))))).)))).)))))).	CUCUAUA-UCUU-AUUCGAGA&UUUCGAAUUAAGAAUAUAGAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN44692_c0_g1_1058_TPlot.pdf
TRINITY_DN44694_c0_g1:1185	si_a468	TRINITY_DN44694_c0_g1	1172	1194	1185	-21.30	-14.50	0.68075117370892	5	1-13,1194-1182;14-21,1179-1172	x-x,1181-1180[BULt]	((((((((..(((((((((((((&)))))))))))))--))))))))	UAAUAAUACAGUUAUAUGUUAUA&UAUAAUAUGUAAU--UAUUGUUA	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN44694_c0_g1_1185_TPlot.pdf
TRINITY_DN44698_c0_g1:502	si_a146	TRINITY_DN44698_c0_g1	491	513	502	-29.70	-20.50	0.69023569023569	11.5	4-9,510-505;10-21,502-491	1-3,513-511[UP5];x-x,504-503[BULt]	((((((((((((..((((((...&...))))))--))))))))))))	GGCCUUAAAACAGUGCAAUGUGA&AAUCGUUGU--UGUUUUAAGGUC	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN44698_c0_g1_502_TPlot.pdf
TRINITY_DN446_c0_g1:752	si_s503	TRINITY_DN446_c0_g1	741	761	752	-24.00	-15.70	0.654166666666667	9.5	3-15,759-747	1-2,761-760[UP5];16-21,746-741[UP3]	......(((((((((((((..&..)))))))))))))......	CAUACGGGAAUUGUUUUGUAA&AAACAAAACAAUUCUAUAUUC	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s503_TRINITY_DN446_c0_g1_752_TPlot.pdf
TRINITY_DN446_c0_g1:753	si_s502	TRINITY_DN446_c0_g1	742	762	753	-22.40	-15.70	0.700892857142857	10.5	4-16,759-747	1-3,762-760[UP5];17-21,746-742[UP3]	.....(((((((((((((...&...))))))))))))).....	AUACGGGAAUUGUUUUGUAAA&UAAACAAAACAAUUCUAUAUU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN446_c0_g1_753_TPlot.pdf
TRINITY_DN44701_c0_g1:2026	si_a506	TRINITY_DN44701_c0_g1	2011	2035	2026	-33.40	-22.10	0.661676646706587	13	2-11,2034-2025;12-17,2020-2015	1-1,2035-2035[UP5];x-x,2024-2021[BULt];18-21,2014-2011[UP3]	....((((((....((((((((((.&.))))))))))----))))))....	CAAAAUUCCAAUACAGGAAGACGAC&UUCGUCUUCCU----UGGAAUGUAA	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN44701_c0_g1_2026_TPlot.pdf
TRINITY_DN44701_c0_g1:2028	si_a504	TRINITY_DN44701_c0_g1	2013	2037	2028	-32.90	-22.10	0.671732522796353	11	4-13,2034-2025;14-19,2020-2015	1-3,2037-2035[UP5];x-x,2024-2021[BULt];20-21,2014-2013[UP3]	..((((((....((((((((((...&...))))))))))----))))))..	AAAUUCCAAUACAGGAAGACGACAU&UUUUCGUCUUCCU----UGGAAUGU	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN44701_c0_g1_2028_TPlot.pdf
TRINITY_DN44701_c0_g1:2122	si_s86	TRINITY_DN44701_c0_g1	2105	2131	2122	-32.90	-23.26	0.706990881458967	9.5	1-15,2131-2117;17-20,2109-2106	16-16,2116-2110[AILt];21-21,2105-2105[UP3]	.((((.......(((((((((((((((&)))))))))))))))------.)))).	UGCGACAUUUGUGAGGAAGAAAGGGAA&UUUCCUUUCUUCUUC------UUCGCU	3	0.999999998448973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN44701_c0_g1_2122_TPlot.pdf
TRINITY_DN44701_c0_g1:2123	si_s85	TRINITY_DN44701_c0_g1	2106	2132	2123	-33.80	-23.06	0.682248520710059	9.5	2-16,2131-2117;18-21,2109-2106	1-1,2132-2132[UP5];17-17,2116-2110[AILt]	((((.......(((((((((((((((.&.)))))))))))))))------.))))	GCGACAUUUGUGAGGAAGAAAGGGAAA&CUUUCCUUUCUUCUUC------UUCGC	3	0.999999999997757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN44701_c0_g1_2123_TPlot.pdf
TRINITY_DN44701_c0_g1:2155	si_s75	TRINITY_DN44701_c0_g1	2144	2164	2155	-24.00	-16.10	0.670833333333333	6	3-6,2162-2159;8-12,2157-2153;14-21,2151-2144	1-2,2164-2163[UP5];7-7,2158-2158[SIL];13-13,2152-2152[SIL]	((((((((.(((((.((((..&..)))).))))).))))))))	AGAAAGGACAGAAAUAAAAAG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN44701_c0_g1_2155_TPlot.pdf
TRINITY_DN44701_c0_g1:2303	si_a351	TRINITY_DN44701_c0_g1	2292	2312	2303	-20.50	-13.70	0.668292682926829	15	9-21,2304-2292	1-8,2312-2305[UP5]	(((((((((((((........&........)))))))))))))	AUCAAAAUAGAAUAAUUUUUG&AAAUAUUAAUUCUAUUUUGAU	3	0.999992511716794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN44701_c0_g1_2303_TPlot.pdf
TRINITY_DN44701_c0_g1:2932	si_s321	TRINITY_DN44701_c0_g1	2912	2941	2932	-31.00	-22.00	0.709677419354839	20.5	1-10,2941-2932;11-20,2922-2913	x-x,2931-2923[BULt];21-21,2912-2912[UP3]	.((((((((((.........((((((((((&))))))))))---------)))))))))).	UUGUGUUUGUGAUAAUUACUACAAGAAGGA&UCCUUCUUGU---------UACAAACAUAC	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN44701_c0_g1_2932_TPlot.pdf
TRINITY_DN4470_c0_g1:2498	si_a43	TRINITY_DN4470_c0_g1	2490	2507	2498	-42.30	-28.50	0.673758865248227	6.5	1-11,2507-2497;14-15,2496-2495;17-20,2494-2491	12-13,x-x[BULq];16-16,x-x[BULq];21-21,2490-2490[UP3]	.((((-((--(((((((((((&)))))))))))..)).)))).	CCGGC-CC--GACCUGCCGGU&ACCGGUAGGUCUAGGAGUCGA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN4470_c0_g1_2498_TPlot.pdf
TRINITY_DN4470_c0_g1:5231	si_a286	TRINITY_DN4470_c0_g1	5220	5240	5231	-28.30	-18.60	0.657243816254417	8.5	2-8,5239-5233;10-14,5231-5227;17-20,5224-5221	1-1,5240-5240[UP5];9-9,5232-5232[SIL];15-16,5226-5225[SIL];21-21,5220-5220[UP3]	.((((..(((((.(((((((.&.))))))).)))))..)))).	AUUUUCUAGUCCUGGCGGUCG&AGAUCGCUUGGAUUUAAAAAA	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN4470_c0_g1_5231_TPlot.pdf
TRINITY_DN4470_c0_g1:6016	si_s570	TRINITY_DN4470_c0_g1	6005	6025	6016	-30.50	-20.50	0.672131147540984	11	3-13,6023-6013	1-2,6025-6024[UP5];14-21,6012-6005[UP3]	........(((((((((((..&..)))))))))))........	CGCGACACUUCCUUGUCCCUC&UCGGGACAAGGAAUAAAAAAA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s570_TRINITY_DN4470_c0_g1_6016_TPlot.pdf
TRINITY_DN4471_c0_g1:1219	si_a351	TRINITY_DN4471_c0_g1	1208	1228	1219	-20.50	-14.00	0.682926829268293	12.5	5-19,1224-1210	1-4,1228-1225[UP5];20-21,1209-1208[UP3]	..(((((((((((((((....&....)))))))))))))))..	AACAAAGUAGGAUUGGUUGUU&AAAUAUUAAUUCUAUUUUGAU	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN4471_c0_g1_1219_TPlot.pdf
TRINITY_DN4471_c0_g1:1221	si_a349	TRINITY_DN4471_c0_g1	1210	1229	1221	-21.30	-14.40	0.676056338028169	9	1-3,1229-1227;7-21,1224-1210	4-6,1226-1225[AILq]	(((((((((((((((..-(((&)))...)))))))))))))))	CAAAGUAGGAUUGGUUG-UUC&GAAAAUAUUAAUUCUAUUUUG	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN4471_c0_g1_1221_TPlot.pdf
TRINITY_DN4471_c0_g1:1560	si_s76	TRINITY_DN4471_c0_g1	1549	1569	1560	-23.60	-17.80	0.754237288135593	10	3-6,1567-1564;9-20,1561-1550	1-2,1569-1568[UP5];7-8,1563-1562[SIL];21-21,1549-1549[UP3]	.((((((((((((..((((..&..))))..)))))))))))).	UAGAAAGGAGGGAUUAAAAUU&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4471_c0_g1_1560_TPlot.pdf
TRINITY_DN4471_c0_g1:1561	si_s75	TRINITY_DN4471_c0_g1	1550	1570	1561	-24.00	-17.80	0.741666666666667	10.5	4-7,1567-1564;10-21,1561-1550	1-3,1570-1568[UP5];8-9,1563-1562[SIL]	((((((((((((..((((...&...))))..))))))))))))	AGAAAGGAGGGAUUAAAAUUG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4471_c0_g1_1561_TPlot.pdf
TRINITY_DN4471_c0_g1:1562	si_s74	TRINITY_DN4471_c0_g1	1551	1571	1562	-25.00	-16.70	0.668	12	5-8,1567-1564;11-21,1561-1551	1-4,1571-1568[UP5];9-10,1563-1562[SIL]	(((((((((((..((((....&....))))..)))))))))))	GAAAGGAGGGAUUAAAAUUGA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4471_c0_g1_1562_TPlot.pdf
TRINITY_DN44728_c0_g1:1607	si_a404	TRINITY_DN44728_c0_g1	1596	1616	1607	-21.70	-15.20	0.700460829493088	3	1-12,1616-1605;14-21,1603-1596	13-13,1604-1604[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	UAAAUAUACACAAAGUAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.999999963006205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN44728_c0_g1_1607_TPlot.pdf
TRINITY_DN44728_c0_g1:1835	si_a403	TRINITY_DN44728_c0_g1	1824	1846	1835	-22.00	-15.80	0.718181818181818	11.5	2-5,1845-1842;7-21,1838-1824	1-1,1846-1846[UP5];6-6,1841-1839[AILt]	(((((((((((((((...((((.&.))))--.)))))))))))))))	AGAUAUGGACAGAGCUUUGUUCG&AGAAU--UGUUUUGUUUAUAUUU	3	0.999955530688011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN44728_c0_g1_1835_TPlot.pdf
TRINITY_DN44739_c0_g1:1541	si_a403	TRINITY_DN44739_c0_g1	1530	1550	1541	-22.00	-14.60	0.663636363636364	10.5	4-19,1547-1532	1-3,1550-1548[UP5];20-21,1531-1530[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUAUGUAAAUAGAGCAAUGAA&AGAAUUGUUUUGUUUAUAUUU	1	0.306597236199205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN44739_c0_g1_1541_TPlot.pdf
TRINITY_DN4473_c0_g1:272	si_a329	TRINITY_DN4473_c0_g1	260	281	272	-29.60	-19.90	0.672297297297297	8	2-11,280-271;12-19,269-262	1-1,281-281[UP5];x-x,270-270[BULt];20-21,261-260[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	AUGGGCGAGGUAAUGAAAGAAG&AUUUUUUUAUU-CCUUGUCCCG	3	0.999998071001669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4473_c0_g1_272_TPlot.pdf
TRINITY_DN4473_c0_g1:273	si_a328	TRINITY_DN4473_c0_g1	261	282	273	-30.10	-19.90	0.661129568106312	9	3-12,280-271;13-20,269-262	1-2,282-281[UP5];x-x,270-270[BULt];21-21,261-261[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	UGGGCGAGGUAAUGAAAGAAGC&GAUUUUUUUAUU-CCUUGUCCC	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4473_c0_g1_273_TPlot.pdf
TRINITY_DN4473_c0_g1:673	si_s78	TRINITY_DN4473_c0_g1	661	682	673	-26.20	-17.70	0.675572519083969	6	1-13,682-670;15-17,667-665;19-20,663-662	14-14,669-668[AILt];18-18,664-664[SIL];21-21,661-661[UP3]	.((.(((..(((((((((((((&)))))))))))))-.))).)).	CGAUGAACUGGAAAGAGAAGAA&UUUUUUUCUUUCC-UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4473_c0_g1_673_TPlot.pdf
TRINITY_DN4473_c0_g1:674	si_s77	TRINITY_DN4473_c0_g1	662	683	674	-25.50	-17.60	0.690196078431373	6	2-14,682-670;16-18,667-665;20-21,663-662	1-1,683-683[UP5];15-15,669-668[AILt];19-19,664-664[SIL]	((.(((..(((((((((((((.&.)))))))))))))-.))).))	GAUGAACUGGAAAGAGAAGAAU&UUUUUUUUCUUUCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4473_c0_g1_674_TPlot.pdf
TRINITY_DN4473_c0_g1:675	si_s76	TRINITY_DN4473_c0_g1	663	684	675	-23.60	-16.10	0.682203389830509	9	3-15,682-670;17-19,667-665	1-2,684-683[UP5];16-16,669-668[AILt];20-21,664-663[UP3]	..(((..(((((((((((((..&..)))))))))))))-.)))..	AUGAACUGGAAAGAGAAGAAUU&AUUUUUUUUCUUUCC-UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4473_c0_g1_675_TPlot.pdf
TRINITY_DN4473_c0_g1:749	si_a117	TRINITY_DN4473_c0_g1	738	758	749	-31.00	-20.30	0.654838709677419	8	1-14,758-745	15-21,744-738[UP3]	.......((((((((((((((&)))))))))))))).......	AAAAAGAAAAGCAAGCUCGUA&UACGAGCUUGUUUUAUAGCAA	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN4473_c0_g1_749_TPlot.pdf
TRINITY_DN4473_c0_g1:750	si_a116	TRINITY_DN4473_c0_g1	739	759	750	-31.10	-21.60	0.694533762057878	7	1-15,759-745	16-21,744-739[UP3]	......(((((((((((((((&)))))))))))))))......	AAAAGAAAAGCAAGCUCGUAU&AUACGAGCUUGUUUUAUAGCA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN4473_c0_g1_750_TPlot.pdf
TRINITY_DN4473_c0_g1:752	si_a114	TRINITY_DN4473_c0_g1	741	761	752	-27.90	-21.80	0.781362007168459	7.5	3-17,759-745	1-2,761-760[UP5];18-21,744-741[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGAAAAGCAAGCUCGUAUAG&AAAUACGAGCUUGUUUUAUAG	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN4473_c0_g1_752_TPlot.pdf
TRINITY_DN4473_c0_g1:753	si_a113	TRINITY_DN4473_c0_g1	742	762	753	-26.20	-21.80	0.83206106870229	8.5	4-18,759-745	1-3,762-760[UP5];19-21,744-742[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAAAGCAAGCUCGUAUAGC&AAAAUACGAGCUUGUUUUAUA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN4473_c0_g1_753_TPlot.pdf
TRINITY_DN4473_c0_g1:755	si_a111	TRINITY_DN4473_c0_g1	744	764	755	-26.20	-21.80	0.83206106870229	10.5	6-20,759-745	1-5,764-760[UP5];21-21,744-744[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAGCAAGCUCGUAUAGCAG&AUAAAAUACGAGCUUGUUUUA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN4473_c0_g1_755_TPlot.pdf
TRINITY_DN4473_c0_g1:756	si_a110	TRINITY_DN4473_c0_g1	745	765	756	-27.80	-21.50	0.773381294964029	11.5	7-21,759-745	1-6,765-760[UP5]	(((((((((((((((......&......)))))))))))))))	AAAGCAAGCUCGUAUAGCAGC&GAUAAAAUACGAGCUUGUUUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN4473_c0_g1_756_TPlot.pdf
TRINITY_DN4473_c0_g1:757	si_a109	TRINITY_DN4473_c0_g1	746	766	757	-28.50	-20.60	0.72280701754386	13.5	8-21,759-746	1-7,766-760[UP5]	((((((((((((((.......&.......))))))))))))))	AAGCAAGCUCGUAUAGCAGCA&AGAUAAAAUACGAGCUUGUUU	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN4473_c0_g1_757_TPlot.pdf
TRINITY_DN4473_c0_g1:758	si_a108	TRINITY_DN4473_c0_g1	747	767	758	-28.50	-19.70	0.691228070175439	15.5	9-21,759-747	1-8,767-760[UP5]	(((((((((((((........&........)))))))))))))	AGCAAGCUCGUAUAGCAGCAG&AAGAUAAAAUACGAGCUUGUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN4473_c0_g1_758_TPlot.pdf
TRINITY_DN4473_c0_g1:925	si_a176	TRINITY_DN4473_c0_g1	914	935	925	-31.70	-21.40	0.675078864353312	9	1-8,935-928;10-18,925-917	9-9,927-926[AILt];19-21,916-914[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	GUUGAUAUUAUUGAAGAUGGGU&ACCCGUCU-AGAUAAUAUCUUU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN4473_c0_g1_925_TPlot.pdf
TRINITY_DN44740_c0_g1:1199	si_s371	TRINITY_DN44740_c0_g1	1185	1209	1199	-43.20	-29.60	0.685185185185185	13.5	3-5,1207-1205;6-12,1203-1197;13-21,1193-1185	1-2,1209-1208[UP5];x-x,1204-1204[BULt];x-x,1196-1194[BULt]	(((((((((...(((((((.(((..&..)))-)))))))---)))))))))	CGGGCGCGUAUUGAGUGAUCCGGGA&AACCG-AUCGCUC---GCGUGUCCG	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN44740_c0_g1_1199_TPlot.pdf
TRINITY_DN44740_c0_g1:742	si_s76	TRINITY_DN44740_c0_g1	731	751	742	-23.60	-16.20	0.686440677966102	11	2-16,750-736	1-1,751-751[UP5];17-21,735-731[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUCUCAGGAGAGAAGGAGGAG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44740_c0_g1_742_TPlot.pdf
TRINITY_DN44740_c0_g1:746	si_s72	TRINITY_DN44740_c0_g1	735	756	746	-24.10	-18.30	0.759336099585062	10.5	1-4,756-753;6-20,750-736	5-5,752-751[AILt];21-21,735-735[UP3]	.(((((((((((((((..((((&))))-.))))))))))))))).	CAGGAGAGAAGGAGGAGGAGGA&UUCU-AUUUUUUUUCUUUCCUU	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN44740_c0_g1_746_TPlot.pdf
TRINITY_DN44740_c0_g1:756	si_a792	TRINITY_DN44740_c0_g1	744	765	756	-27.60	-19.60	0.710144927536232	8	2-15,764-751;18-20,747-745	1-1,765-765[UP5];16-17,750-748[AILt];21-21,744-744[UP3]	.(((...((((((((((((((.&.))))))))))))))-..))).	AGGAGGAGGAGGAUAGAAAGAC&AUUUUUCUAUUUUCC-AAUCCG	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN44740_c0_g1_756_TPlot.pdf
TRINITY_DN44744_c0_g1:2284	si_a626	TRINITY_DN44744_c0_g1	2273	2293	2284	-30.20	-20.10	0.665562913907285	9	1-14,2293-2280;16-16,2278-2278	15-15,2279-2279[SIL];17-21,2277-2273[UP3]	.....(.((((((((((((((&)))))))))))))).).....	UUUCCUGGAUAUGAUAUGCCU&AGGCGUAUUAUGUCGAUUUUU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN44744_c0_g1_2284_TPlot.pdf
TRINITY_DN44745_c0_g1:1046	si_s6	TRINITY_DN44745_c0_g1	1035	1055	1046	-21.70	-14.20	0.654377880184332	6	1-3,1055-1053;6-12,1050-1044;14-21,1042-1035	4-5,1052-1051[SIL];13-13,1043-1043[SIL]	((((((((.(((((((..(((&)))..))))))).))))))))	UAUAGUAAAAAUAGGUUUUAU&AUAUUACUUAUUAUUACUAUA	4	0.999999708515712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN44745_c0_g1_1046_TPlot.pdf
TRINITY_DN44749_c0_g1:1051	si_a312	TRINITY_DN44749_c0_g1	1040	1058	1051	-31.20	-20.50	0.657051282051282	9	1-7,1058-1052;10-18,1051-1043	8-9,x-x[BULq];19-21,1042-1040[UP3]	...(((((((((--(((((((&)))))))..)))))))))...	CCUUCGUGGGUA--UCCAAGU&GCUUGGAUUUAUCCAUGAUUU	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN44749_c0_g1_1051_TPlot.pdf
TRINITY_DN4474_c0_g1:1109	si_s64	TRINITY_DN4474_c0_g1	1098	1118	1109	-24.10	-17.00	0.705394190871369	6	2-13,1117-1106;16-19,1103-1100	1-1,1118-1118[UP5];14-15,1105-1104[SIL];20-21,1099-1098[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	CUAAAACCUAGAGGUUGCUAU&UUAGCAACUUCUAUUUUUUUU	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN4474_c0_g1_1109_TPlot.pdf
TRINITY_DN4474_c0_g1:1116	si_s57	TRINITY_DN4474_c0_g1	1105	1127	1116	-29.30	-19.20	0.655290102389078	10.5	1-4,1127-1124;7-9,1121-1119;10-20,1116-1106	5-6,1123-1122[SIL];x-x,1118-1117[BULt];21-21,1105-1105[UP3]	.(((((((((((..(((..((((&))))..)))--))))))))))).	CUAGAGGUUGCUAUGACAGGAAA&UUUCAAGUU--AGCAACUUCUAU	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN4474_c0_g1_1116_TPlot.pdf
TRINITY_DN44751_c0_g1:277	si_s139	TRINITY_DN44751_c0_g1	265	286	277	-30.10	-20.52	0.681727574750831	8	3-16,284-271;20-21,266-265	1-2,286-285[UP5];17-19,270-267[AILt]	((....((((((((((((((..&..))))))))))))))-...))	CCACUAGGGUUUUUGGUUGAAA&AAUCAAUCAAAAACCC-AAAGG	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s139_TRINITY_DN44751_c0_g1_277_TPlot.pdf
TRINITY_DN44751_c0_g1:280	si_s136	TRINITY_DN44751_c0_g1	269	289	280	-28.90	-20.50	0.709342560553633	12	6-19,284-271	1-5,289-285[UP5];20-21,270-269[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAGGGUUUUUGGUUGAAAAGG&UUGAAUCAAUCAAAAACCCAA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s136_TRINITY_DN44751_c0_g1_280_TPlot.pdf
TRINITY_DN44751_c0_g1:281	si_s135	TRINITY_DN44751_c0_g1	270	290	281	-30.50	-21.28	0.697704918032787	10	1-3,290-288;7-20,284-271	4-6,287-285[SIL];21-21,270-270[UP3]	.((((((((((((((...(((&)))...)))))))))))))).	AGGGUUUUUGGUUGAAAAGGC&GUUGAAUCAAUCAAAAACCCA	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s135_TRINITY_DN44751_c0_g1_281_TPlot.pdf
TRINITY_DN4475_c0_g1:3613	si_a784	TRINITY_DN4475_c0_g1	3601	3622	3613	-24.70	-16.90	0.684210526315789	8	2-14,3621-3609;15-16,3607-3606	1-1,3622-3622[UP5];x-x,3608-3608[BULt];17-21,3605-3601[UP3]	.....((.(((((((((((((.&.)))))))))))))-)).....	CCCAGGGCAGAAAUAGAAGAGG&ACUCUUCUAUUUUU-CUAUUUU	2	0.999999972241287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4475_c0_g1_3613_TPlot.pdf
TRINITY_DN4475_c0_g1:3614	si_a783	TRINITY_DN4475_c0_g1	3602	3623	3614	-24.70	-16.90	0.684210526315789	9	3-15,3621-3609;16-17,3607-3606	1-2,3623-3622[UP5];x-x,3608-3608[BULt];18-21,3605-3602[UP3]	....((.(((((((((((((..&..)))))))))))))-))....	CCAGGGCAGAAAUAGAAGAGGG&AACUCUUCUAUUUUU-CUAUUU	4	0.999999999979399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4475_c0_g1_3614_TPlot.pdf
TRINITY_DN4475_c0_g1:3704	si_a788	TRINITY_DN4475_c0_g1	3692	3715	3704	-24.80	-16.20	0.653225806451613	10	1-8,3715-3708;9-16,3705-3698;17-20,3696-3693	x-x,3707-3706[BULt];x-x,3697-3697[BULt];21-21,3692-3692[UP3]	.((((.((((((((..((((((((&))))))))--))))))))-)))).	AUGGAUGAAUAGAGAGGAAUGGAG&UUCUAUUU--UUCUAUUU-UCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4475_c0_g1_3704_TPlot.pdf
TRINITY_DN4475_c0_g1:3709	si_s69	TRINITY_DN4475_c0_g1	3698	3718	3709	-23.40	-17.50	0.747863247863248	7	1-16,3718-3703;19-21,3700-3698	17-18,3702-3701[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	GAAUAGAGAGGAAUGGAGGUU&AACUUCUAUUUUUUUUCUUUC	2	0.999983338261388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4475_c0_g1_3709_TPlot.pdf
TRINITY_DN4475_c0_g1:3710	si_s68	TRINITY_DN4475_c0_g1	3699	3719	3710	-23.10	-15.30	0.662337662337662	9.5	2-17,3718-3703	1-1,3719-3719[UP5];18-21,3702-3699[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAUAGAGAGGAAUGGAGGUUA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4475_c0_g1_3710_TPlot.pdf
TRINITY_DN44762_c0_g1:1179	si_s485	TRINITY_DN44762_c0_g1	1168	1188	1179	-18.10	-12.70	0.701657458563536	5	1-11,1188-1178;13-18,1176-1171	12-12,1177-1177[SIL];19-21,1170-1168[UP3]	...((((((.(((((((((((&))))))))))).))))))...	GUAAUAUUUUAAUAAAUAUAG&CUAUAUUUAUUUAAAUAUAAA	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN44762_c0_g1_1179_TPlot.pdf
TRINITY_DN4476_c0_g1:795	si_a68	TRINITY_DN4476_c0_g1	784	803	795	-25.40	-16.90	0.665354330708661	7	2-7,802-797;9-20,796-785	1-1,803-803[UP5];8-8,x-x[BULq];21-21,784-784[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AGAAGAGCAGUUU-AGAGAAA&CUUCUUUCAAAUUGUUUUUCA	3	0.999999999997253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4476_c0_g1_795_TPlot.pdf
TRINITY_DN44772_c0_g1:108	si_s432	TRINITY_DN44772_c0_g1	97	117	108	-21.30	-15.40	0.723004694835681	7	3-15,115-103;17-20,101-98	1-2,117-116[UP5];16-16,102-102[SIL];21-21,97-97[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AGUGGAGUGUAAUUAUUGUAA&UAACAAUAAUUACAUAUUAUA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN44772_c0_g1_108_TPlot.pdf
TRINITY_DN44772_c0_g1:111	si_s429	TRINITY_DN44772_c0_g1	100	120	111	-21.10	-14.40	0.682464454976303	12.5	6-18,115-103	1-5,120-116[UP5];19-21,102-100[UP3]	...(((((((((((((.....&.....)))))))))))))...	GGAGUGUAAUUAUUGUAAAAA&AUAUAACAAUAAUUACAUAUU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN44772_c0_g1_111_TPlot.pdf
TRINITY_DN44773_c0_g1:1924	si_a760	TRINITY_DN44773_c0_g1	1913	1938	1924	-31.10	-20.40	0.655948553054662	18	1-5,1938-1934;6-18,1928-1916	x-x,1933-1929[BULt];19-21,1915-1913[UP3]	...(((((((((((((.....(((((&)))))-----)))))))))))))...	AUAGAUCGAGGGCCCACUUGGGAGGA&UCCUU-----UGGGUUUUUGAUUGAU	4	0.999999998937883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN44773_c0_g1_1924_TPlot.pdf
TRINITY_DN44788_c0_g1:1571	si_s76	TRINITY_DN44788_c0_g1	1559	1581	1571	-23.60	-15.90	0.673728813559322	9	2-9,1580-1573;10-14,1571-1567;15-21,1565-1559	1-1,1581-1581[UP5];x-x,1572-1572[BULt];x-x,1566-1566[BULt]	(((((((.(((((.((((((((.&.))))))))-)))))-)))))))	AAGAGAGUGGAGGCAAGAGAGAA&AUUUUUUUU-CUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44788_c0_g1_1571_TPlot.pdf
TRINITY_DN44788_c0_g1:375	si_s181	TRINITY_DN44788_c0_g1	364	384	375	-34.60	-23.10	0.667630057803468	12.5	4-11,381-374;14-18,371-367	1-3,384-382[UP5];12-13,373-372[SIL];19-21,366-364[UP3]	...(((((..((((((((...&...))))))))..)))))...	AGGGAUCGCAGCUCGGGCGAG&GAUGCCCGAGUAACGAUUAUU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN44788_c0_g1_375_TPlot.pdf
TRINITY_DN44788_c0_g1:576	si_s802	TRINITY_DN44788_c0_g1	565	585	576	-26.40	-17.40	0.659090909090909	16	7-18,579-568	1-6,585-580[UP5];19-21,567-565[UP3]	...((((((((((((......&......))))))))))))...	GCUGGUGGCGGAGAUCGGUUG&UAUUUUAUCUUCGUUACCUUU	4	0.999999999984248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN44788_c0_g1_576_TPlot.pdf
TRINITY_DN4478_c0_g1:2296	si_a539	TRINITY_DN4478_c0_g1	2286	2305	2296	-32.70	-24.80	0.758409785932722	6.5	1-13,2305-2293;15-17,2292-2290	14-14,x-x[BULq];18-21,2289-2286[UP3]	....(((-(((((((((((((&))))))))))))).)))....	AAAGGGA-UGAACCGGUCGCU&AGCGAUCGGUUCAAUCUAUUU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN4478_c0_g1_2296_TPlot.pdf
TRINITY_DN4478_c0_g1:2581	si_s347	TRINITY_DN4478_c0_g1	2570	2590	2581	-33.70	-22.00	0.652818991097923	8	1-14,2590-2577	15-21,2576-2570[UP3]	.......((((((((((((((&)))))))))))))).......	GAUUUAACUUUAUCUCUCCGU&ACGGGGAGAUAAAGAAAUAGA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s347_TRINITY_DN4478_c0_g1_2581_TPlot.pdf
TRINITY_DN4478_c0_g1:2584	si_s344	TRINITY_DN4478_c0_g1	2573	2593	2584	-33.40	-24.30	0.727544910179641	8	3-17,2591-2577	1-2,2593-2592[UP5];18-21,2576-2573[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUAACUUUAUCUCUCCGUGCA&UUCACGGGGAGAUAAAGAAAU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN4478_c0_g1_2584_TPlot.pdf
TRINITY_DN4478_c0_g1:2585	si_s343	TRINITY_DN4478_c0_g1	2574	2594	2585	-33.40	-24.30	0.727544910179641	9	4-18,2591-2577	1-3,2594-2592[UP5];19-21,2576-2574[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAACUUUAUCUCUCCGUGCAA&AUUCACGGGGAGAUAAAGAAA	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s343_TRINITY_DN4478_c0_g1_2585_TPlot.pdf
TRINITY_DN44794_c0_g1:670	si_a78	TRINITY_DN44794_c0_g1	659	679	670	-22.30	-15.70	0.704035874439462	10.5	3-18,677-662	1-2,679-678[UP5];19-21,661-659[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAUUAGUAGUGAGAGACGUU&AUUGUUUUUCAUUAUUAAGAA	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN44794_c0_g1_670_TPlot.pdf
TRINITY_DN447_c0_g1:1614	si_s474	TRINITY_DN447_c0_g1	1603	1623	1614	-31.80	-21.70	0.682389937106918	10.5	1-13,1623-1611	14-21,1610-1603[UP3]	........(((((((((((((&)))))))))))))........	UCGCUGAGGGGGUCUGUUGGA&UCCAACGGAUCCUAUAUUUAU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN447_c0_g1_1614_TPlot.pdf
TRINITY_DN447_c0_g1:1615	si_s473	TRINITY_DN447_c0_g1	1604	1624	1615	-31.80	-22.70	0.713836477987421	9.5	1-14,1624-1611	15-21,1610-1604[UP3]	.......((((((((((((((&)))))))))))))).......	CGCUGAGGGGGUCUGUUGGAU&AUCCAACGGAUCCUAUAUUUA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN447_c0_g1_1615_TPlot.pdf
TRINITY_DN447_c0_g1:1616	si_s472	TRINITY_DN447_c0_g1	1605	1625	1616	-31.80	-22.70	0.713836477987421	9.5	2-15,1624-1611	1-1,1625-1625[UP5];16-21,1610-1605[UP3]	......((((((((((((((.&.))))))))))))))......	GCUGAGGGGGUCUGUUGGAUC&UAUCCAACGGAUCCUAUAUUU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s472_TRINITY_DN447_c0_g1_1616_TPlot.pdf
TRINITY_DN447_c0_g1:3551	si_s191	TRINITY_DN447_c0_g1	3540	3560	3551	-26.60	-18.50	0.695488721804511	6.5	1-6,3560-3555;8-11,3553-3550;13-21,3548-3540	7-7,3554-3554[SIL];12-12,3549-3549[SIL]	(((((((((.((((.((((((&)))))).)))).)))))))))	UACAUUCCACAGUAUUUGUUG&UAACGAUUAUUUUGGAAUGUA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN447_c0_g1_3551_TPlot.pdf
TRINITY_DN447_c0_g4:812	si_s556	TRINITY_DN447_c0_g4	801	821	812	-28.50	-21.90	0.768421052631579	4.5	2-20,820-802	1-1,821-821[UP5];21-21,801-801[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UUUCCGGGAAUGUUAAUUCUU&UAGAAUUAAUAUUUUCGGGAC	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN447_c0_g4_812_TPlot.pdf
TRINITY_DN447_c1_g3:1131	si_s481	TRINITY_DN447_c1_g3	1120	1140	1131	-23.00	-17.30	0.752173913043478	8.5	1-13,1140-1128;15-17,1126-1124	14-14,1127-1127[SIL];18-21,1123-1120[UP3]	....(((.(((((((((((((&))))))))))))).)))....	CCCCUGAUUAGAUAUGGGGUC&GAUCCUAUAUUUAUUUAAAUA	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN447_c1_g3_1131_TPlot.pdf
TRINITY_DN447_c1_g4:2174	si_s481	TRINITY_DN447_c1_g4	2163	2183	2174	-23.00	-17.30	0.752173913043478	8.5	1-13,2183-2171;15-17,2169-2167	14-14,2170-2170[SIL];18-21,2166-2163[UP3]	....(((.(((((((((((((&))))))))))))).)))....	CCCCUGAUUAGAUAUGGGGUC&GAUCCUAUAUUUAUUUAAAUA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN447_c1_g4_2174_TPlot.pdf
TRINITY_DN447_c6_g1:462	si_s221	TRINITY_DN447_c6_g1	451	470	462	-35.40	-24.68	0.697175141242938	5	1-6,470-465;8-16,464-456;20-21,452-451	7-7,x-x[BULq];17-19,455-453[SIL]	((...(((((((((-((((((&)))))).)))))))))...))	CCCAUUUCACGCGG-UUCGAA&UUCGAAACCGCGUGAAUAAGG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s221_TRINITY_DN447_c6_g1_462_TPlot.pdf
TRINITY_DN447_c7_g1:4413	si_a744	TRINITY_DN447_c7_g1	4402	4425	4413	-44.40	-31.40	0.707207207207207	9	1-5,4425-4421;6-7,4419-4418;8-8,4416-4416;9-20,4414-4403	x-x,4420-4420[BULt];x-x,4417-4417[BULt];x-x,4415-4415[BULt];21-21,4402-4402[UP3]	.((((((((((((.(.((.(((((&)))))-))-)-)))))))))))).	CAGGAGGUUCGUGAGACUGAGGGG&CCCCU-GG-C-CAUGAACCUCCUU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a744_TRINITY_DN447_c7_g1_4413_TPlot.pdf
TRINITY_DN447_c7_g1:4416	si_a742	TRINITY_DN447_c7_g1	4404	4427	4416	-44.90	-30.40	0.677060133630289	10.5	3-7,4425-4421;8-9,4419-4418;10-10,4416-4416;11-21,4414-4404	1-2,4427-4426[UP5];x-x,4420-4420[BULt];x-x,4417-4417[BULt];x-x,4415-4415[BULt]	(((((((((((.(.((.(((((..&..)))))-))-)-)))))))))))	GGAGGUUCGUGAGACUGAGGGGGG&UACCCCU-GG-C-CAUGAACCUCC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a742_TRINITY_DN447_c7_g1_4416_TPlot.pdf
TRINITY_DN44802_c0_g1:730	si_a758	TRINITY_DN44802_c0_g1	718	741	730	-34.00	-22.20	0.652941176470588	6.5	1-6,741-736;7-13,733-727;14-21,725-718	x-x,735-734[BULt];x-x,726-726[BULt]	((((((((.(((((((..((((((&))))))--)))))))-))))))))	UAAUCAAAUAACUCAAGUAGGAGG&CCUCCU--UUGGGUU-UUUGAUUG	2	0.999989487053654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN44802_c0_g1_730_TPlot.pdf
TRINITY_DN44806_c0_g1:1091	si_a711	TRINITY_DN44806_c0_g1	1080	1100	1091	-27.90	-18.28	0.655197132616487	8	1-6,1100-1095;10-18,1091-1083;20-21,1081-1080	7-9,1094-1092[SIL];19-19,1082-1082[SIL]	((.(((((((((...((((((&))))))...))))))))).))	AGAAACGAUUAUCGGGGAGUG&CAUUCCAAAAUAAUCGUUACU	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN44806_c0_g1_1091_TPlot.pdf
TRINITY_DN44806_c0_g1:221	si_a533	TRINITY_DN44806_c0_g1	209	229	221	-39.40	-28.60	0.725888324873097	6.5	1-9,229-221;12-14,219-217;15-20,215-210	10-11,220-220[AILq];x-x,216-216[BULt];21-21,209-209[UP3]	.((((((.(((.-(((((((((&)))))))))..)))-)))))).	CUUGAGCUCGAA-GCUCGCGUG&CACGCGAGCGAUCG-GUUCAAU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN44806_c0_g1_221_TPlot.pdf
TRINITY_DN44806_c0_g1:223	si_a530	TRINITY_DN44806_c0_g1	212	232	223	-43.70	-28.90	0.661327231121281	5.5	1-2,232-231;4-12,229-221;15-17,219-217;18-21,215-212	3-3,230-230[SIL];13-14,220-220[AILq];x-x,216-216[BULt]	((((.(((.-(((((((((.((&)).)))))))))..)))-))))	GAGCUCGAA-GCUCGCGUGACC&GGACACGCGAGCGAUCG-GUUC	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a530_TRINITY_DN44806_c0_g1_223_TPlot.pdf
TRINITY_DN44806_c0_g1:504	si_s737	TRINITY_DN44806_c0_g1	494	513	504	-37.60	-25.10	0.667553191489362	6.5	1-11,513-503;14-16,500-498;18-20,497-495	12-13,502-501[SIL];17-17,x-x[BULq];21-21,494-494[UP3]	.(((-(((..(((((((((((&)))))))))))..))).))).	CGUC-GUCCUUUCGCCCGUCU&AGACGGGUGAAUAGAUUGACC	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s737_TRINITY_DN44806_c0_g1_504_TPlot.pdf
TRINITY_DN44806_c0_g1:505	si_s736	TRINITY_DN44806_c0_g1	495	514	505	-35.60	-25.10	0.705056179775281	5.5	2-12,513-503;15-17,500-498;19-21,497-495	1-1,514-514[UP5];13-14,502-501[SIL];18-18,x-x[BULq]	(((-(((..(((((((((((.&.)))))))))))..))).)))	GUC-GUCCUUUCGCCCGUCUU&UAGACGGGUGAAUAGAUUGAC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s736_TRINITY_DN44806_c0_g1_505_TPlot.pdf
TRINITY_DN44806_c0_g1:509	si_s732	TRINITY_DN44806_c0_g1	498	518	509	-34.40	-23.40	0.680232558139535	8	3-4,516-515;6-16,513-503;19-21,500-498	1-2,518-517[UP5];5-5,514-514[SIL];17-18,502-501[SIL]	(((..(((((((((((.((..&..)).)))))))))))..)))	GUCCUUUCGCCCGUCUUGAAC&UAUCUAGACGGGUGAAUAGAU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN44806_c0_g1_509_TPlot.pdf
TRINITY_DN44806_c0_g1:855	si_s629	TRINITY_DN44806_c0_g1	844	868	855	-34.60	-22.80	0.658959537572254	13	1-5,868-864;6-19,859-846;21-21,844-844	x-x,863-860[BULt];20-20,845-845[SIL]	(.((((((((((((((....(((((&)))))----)))))))))))))).)	CUGACGUCUACGGAGAAGUUGGUCG&CGAUC----UUUUCGUAGGCGUUUG	4	0.999899614434127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN44806_c0_g1_855_TPlot.pdf
TRINITY_DN44808_c0_g1:187	si_a560	TRINITY_DN44808_c0_g1	175	196	187	-36.60	-24.00	0.655737704918033	9.5	4-16,193-181;17-21,179-175	1-3,196-194[UP5];x-x,180-180[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	ACGGUCUUAUGGGGAGGUGUUG&CUUUAUCUCCCCGUGA-AUCGU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN44808_c0_g1_187_TPlot.pdf
TRINITY_DN44808_c0_g1:193	si_a554	TRINITY_DN44808_c0_g1	182	202	193	-34.40	-22.40	0.651162790697674	10	1-4,202-199;6-7,197-196;10-21,193-182	5-5,198-198[SIL];8-9,195-194[SIL]	((((((((((((..((.((((&)))).))..))))))))))))	UAUGGGGAGGUGUUGGUAUAG&CUAUUUCUUUAUCUCCCCGUG	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN44808_c0_g1_193_TPlot.pdf
TRINITY_DN44808_c0_g1:311	si_a639	TRINITY_DN44808_c0_g1	300	320	311	-23.60	-15.60	0.661016949152542	9	2-6,319-315;8-17,313-304	1-1,320-320[UP5];7-7,314-314[SIL];18-21,303-300[UP3]	....((((((((((.(((((.&.))))).))))))))))....	UUACGUUGCUCAAAUGAAUCC&CGAUUUUUUUGAGUAAUAUAU	3	0.999999992920476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN44808_c0_g1_311_TPlot.pdf
TRINITY_DN44808_c0_g1:366	si_a76	TRINITY_DN44808_c0_g1	354	375	366	-21.20	-14.80	0.69811320754717	7.5	3-10,373-366;11-21,364-354	1-2,375-374[UP5];x-x,365-365[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	UUUAAUAAUGGCAAAACAGUGG&AAAUUGUUUU-UCAUUAUUAAG	4	0.999994064120275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN44808_c0_g1_366_TPlot.pdf
TRINITY_DN44808_c0_g1:367	si_a75	TRINITY_DN44808_c0_g1	355	376	367	-21.30	-15.10	0.708920187793427	8	1-1,376-376;4-11,373-366;12-21,364-355	2-3,375-374[SIL];x-x,365-365[BULt]	((((((((((.((((((((..(&)..))))))))-))))))))))	UUAAUAAUGGCAAAACAGUGGG&CAAAUUGUUUU-UCAUUAUUAA	3	0.999989435649234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN44808_c0_g1_367_TPlot.pdf
TRINITY_DN44808_c0_g1:393	si_a19	TRINITY_DN44808_c0_g1	382	403	393	-27.00	-17.60	0.651851851851852	5	1-2,403-402;3-19,400-384	x-x,401-401[BULt];20-21,383-382[UP3]	..(((((((((((((((((.((&))-)))))))))))))))))..	CCAAUUGAAAAUAAAUAGGACU&AG-CCUAUUUAUUUUUAGUUCU	2	0.999924879086262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN44808_c0_g1_393_TPlot.pdf
TRINITY_DN44808_c0_g1:394	si_a18	TRINITY_DN44808_c0_g1	383	404	394	-26.30	-18.80	0.714828897338403	4	1-3,404-402;4-20,400-384	x-x,401-401[BULt];21-21,383-383[UP3]	.(((((((((((((((((.(((&)))-))))))))))))))))).	CAAUUGAAAAUAAAUAGGACUU&AAG-CCUAUUUAUUUUUAGUUC	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN44808_c0_g1_394_TPlot.pdf
TRINITY_DN44808_c0_g1:395	si_a17	TRINITY_DN44808_c0_g1	384	405	395	-24.30	-19.00	0.781893004115226	4	2-4,404-402;5-21,400-384	1-1,405-405[UP5];x-x,401-401[BULt]	(((((((((((((((((.(((.&.)))-)))))))))))))))))	AAUUGAAAAUAAAUAGGACUUA&AAAG-CCUAUUUAUUUUUAGUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN44808_c0_g1_395_TPlot.pdf
TRINITY_DN44808_c0_g1:396	si_a16	TRINITY_DN44808_c0_g1	385	407	396	-26.30	-18.60	0.707224334600761	5	1-2,407-406;3-5,404-402;6-21,400-385	x-x,405-405[BULt];x-x,401-401[BULt]	((((((((((((((((.(((.((&))-)))-))))))))))))))))	AUUGAAAAUAAAUAGGACUUAUC&GA-AAG-CCUAUUUAUUUUUAGU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN44808_c0_g1_396_TPlot.pdf
TRINITY_DN4480_c0_g1:1357	si_a485	TRINITY_DN4480_c0_g1	1346	1366	1357	-26.60	-18.70	0.703007518796992	8.5	1-7,1366-1360;9-17,1358-1350;19-20,1348-1347	8-8,1359-1359[SIL];18-18,1349-1349[SIL];21-21,1346-1346[UP3]	.((.(((((((((.(((((((&))))))).))))))))).)).	CGGGGACGUAUUCGAUGUGGC&GUUAUAUAGAAUAUGUCGUUU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN4480_c0_g1_1357_TPlot.pdf
TRINITY_DN4480_c0_g1:1361	si_a481	TRINITY_DN4480_c0_g1	1350	1370	1361	-25.60	-17.90	0.69921875	11.5	4-11,1367-1360;13-21,1358-1350	1-3,1370-1368[UP5];12-12,1359-1359[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GACGUAUUCGAUGUGGCGCGG&UAUUGUUAUAUAGAAUAUGUC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN4480_c0_g1_1361_TPlot.pdf
TRINITY_DN4480_c0_g1:2243	si_s309	TRINITY_DN4480_c0_g1	2231	2251	2243	-33.80	-22.60	0.668639053254438	4.5	1-8,2251-2244;10-13,2243-2240;15-21,2237-2231	9-9,x-x[BULq];14-14,2239-2238[AILt]	(((((((..((((-((((((((&)))))))).))))-.)))))))	CGAGAAGAUACAG-AUUUUCGC&GCGAAAAUUCUGU-CCUUCUUG	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN4480_c0_g1_2243_TPlot.pdf
TRINITY_DN4480_c0_g1:2311	si_s649	TRINITY_DN4480_c0_g1	2300	2319	2311	-43.80	-28.80	0.657534246575343	7	1-6,2319-2314;8-12,2313-2309;14-20,2307-2301	7-7,x-x[BULq];13-13,2308-2308[SIL];21-21,2300-2300[UP3]	.(((((((.(((((-((((((&)))))).))))).))))))).	GCCUCCGGAUGUGU-GGGGGC&GCCCUCGAUACAAUCGGGGGA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN4480_c0_g1_2311_TPlot.pdf
TRINITY_DN4480_c0_g1:2312	si_s648	TRINITY_DN4480_c0_g1	2301	2320	2312	-43.50	-28.60	0.657471264367816	7	2-7,2319-2314;9-13,2313-2309;15-21,2307-2301	1-1,2320-2320[UP5];8-8,x-x[BULq];14-14,2308-2308[SIL]	(((((((.(((((-((((((.&.)))))).))))).)))))))	CCUCCGGAUGUGU-GGGGGCC&UGCCCUCGAUACAAUCGGGGG	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s648_TRINITY_DN4480_c0_g1_2312_TPlot.pdf
TRINITY_DN4480_c0_g1:2445	si_s296	TRINITY_DN4480_c0_g1	2434	2455	2445	-31.60	-22.10	0.699367088607595	10	1-6,2455-2450;8-17,2447-2438	7-7,2449-2448[AILt];18-21,2437-2434[UP3]	....((((((((((..((((((&))))))-.))))))))))....	GCGAUUGCGAUUCCUCGUCGAC&GUCGAU-UGGAAUUGCGAAAAU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN4480_c0_g1_2445_TPlot.pdf
TRINITY_DN4480_c0_g1:2446	si_s295	TRINITY_DN4480_c0_g1	2435	2456	2446	-32.20	-22.30	0.692546583850932	10	2-7,2455-2450;9-18,2447-2438	1-1,2456-2456[UP5];8-8,2449-2448[AILt];19-21,2437-2435[UP3]	...((((((((((..((((((.&.))))))-.))))))))))...	CGAUUGCGAUUCCUCGUCGACC&AGUCGAU-UGGAAUUGCGAAAA	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN4480_c0_g1_2446_TPlot.pdf
TRINITY_DN4480_c0_g1:2447	si_s294	TRINITY_DN4480_c0_g1	2436	2457	2447	-32.60	-22.30	0.684049079754601	11	3-8,2455-2450;10-19,2447-2438	1-2,2457-2456[UP5];9-9,2449-2448[AILt];20-21,2437-2436[UP3]	..((((((((((..((((((..&..))))))-.))))))))))..	GAUUGCGAUUCCUCGUCGACCC&UAGUCGAU-UGGAAUUGCGAAA	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN4480_c0_g1_2447_TPlot.pdf
TRINITY_DN4480_c0_g1:2448	si_s293	TRINITY_DN4480_c0_g1	2437	2458	2448	-34.30	-22.30	0.650145772594752	12	4-9,2455-2450;11-20,2447-2438	1-3,2458-2456[UP5];10-10,2449-2448[AILt];21-21,2437-2437[UP3]	.((((((((((..((((((...&...))))))-.)))))))))).	AUUGCGAUUCCUCGUCGACCCG&CUAGUCGAU-UGGAAUUGCGAA	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN4480_c0_g1_2448_TPlot.pdf
TRINITY_DN4480_c0_g1:2479	si_a531	TRINITY_DN4480_c0_g1	2468	2488	2479	-42.00	-29.20	0.695238095238095	5.5	1-3,2488-2486;5-12,2484-2477;14-16,2476-2474;17-20,2472-2469	4-4,2485-2485[SIL];13-13,x-x[BULq];x-x,2473-2473[BULt];21-21,2468-2468[UP3]	.((((.(((-((((((((.(((&))).)))))))).)))-)))).	CGAGCUCGA-CGCUCGCGAGUC&GACACGCGAGCGAUCG-GUUCA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a531_TRINITY_DN4480_c0_g1_2479_TPlot.pdf
TRINITY_DN4480_c0_g1:2483	si_a527	TRINITY_DN4480_c0_g1	2473	2492	2483	-47.30	-31.90	0.674418604651163	5.5	1-3,2492-2490;5-7,2488-2486;9-16,2484-2477;18-21,2476-2473	4-4,2489-2489[SIL];8-8,2485-2485[SIL];17-17,x-x[BULq]	((((-((((((((.(((.(((&))).))).)))))))).))))	UCGA-CGCUCGCGAGUCGGCC&GGCGGACACGCGAGCGAUCGG	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a527_TRINITY_DN4480_c0_g1_2483_TPlot.pdf
TRINITY_DN4480_c0_g1:2484	si_a526	TRINITY_DN4480_c0_g1	2474	2493	2484	-45.60	-30.90	0.677631578947368	6	2-4,2492-2490;6-8,2488-2486;10-17,2484-2477;19-21,2476-2474	1-1,2493-2493[UP5];5-5,2489-2489[SIL];9-9,2485-2485[SIL];18-18,x-x[BULq]	(((-((((((((.(((.(((.&.))).))).)))))))).)))	CGA-CGCUCGCGAGUCGGCCC&AGGCGGACACGCGAGCGAUCG	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN4480_c0_g1_2484_TPlot.pdf
TRINITY_DN4480_c0_g1:2485	si_a525	TRINITY_DN4480_c0_g1	2475	2494	2485	-44.10	-29.10	0.659863945578231	8	3-5,2492-2490;7-9,2488-2486;11-18,2484-2477;20-21,2476-2475	1-2,2494-2493[UP5];6-6,2489-2489[SIL];10-10,2485-2485[SIL];19-19,x-x[BULq]	((-((((((((.(((.(((..&..))).))).)))))))).))	GA-CGCUCGCGAGUCGGCCCU&AAGGCGGACACGCGAGCGAUC	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a525_TRINITY_DN4480_c0_g1_2485_TPlot.pdf
TRINITY_DN44814_c0_g1:37	si_a316	TRINITY_DN44814_c0_g1	26	47	37	-26.30	-17.90	0.680608365019011	9.5	1-5,47-43;6-16,41-31	x-x,42-42[BULt];17-21,30-26[UP3]	.....(((((((((((.(((((&)))))-))))))))))).....	UUCGCAAUUAUGGAUGAAGUCC&GGAUU-UAUCCAUGAUUUUUUU	3	0.999989435649234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN44814_c0_g1_37_TPlot.pdf
TRINITY_DN44818_c0_g1:3424	si_s255	TRINITY_DN44818_c0_g1	3413	3433	3424	-29.40	-20.30	0.690476190476191	10.5	1-10,3433-3424;12-17,3422-3417	11-11,3423-3423[SIL];18-21,3416-3413[UP3]	....((((((.((((((((((&)))))))))).))))))....	AGUGGAGUGGCGUGUUGGGAA&UUCCCGAUAUAUUACUCAAAA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN44818_c0_g1_3424_TPlot.pdf
TRINITY_DN44818_c0_g1:3450	si_a47	TRINITY_DN44818_c0_g1	3439	3459	3450	-41.20	-27.28	0.662135922330097	8.5	1-2,3459-3458;6-13,3454-3447;15-21,3445-3439	3-5,3457-3455[SIL];14-14,3446-3446[SIL]	(((((((.((((((((...((&))...)))))))).)))))))	CGGGUCGUCUCCUAGGAGGAC&GUAGGUCUAGGAGUCGACUCG	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN44818_c0_g1_3450_TPlot.pdf
TRINITY_DN44825_c0_g1:1298	si_a836	TRINITY_DN44825_c0_g1	1287	1307	1298	-24.10	-16.30	0.676348547717842	18	9-19,1299-1289	1-8,1307-1300[UP5];20-21,1288-1287[UP3]	..(((((((((((........&........)))))))))))..	AGGGCAGCUUCUAGUUCAGUU&AAAAAAAAUAGAAGUUGCUAA	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN44825_c0_g1_1298_TPlot.pdf
TRINITY_DN44826_c0_g1:602	si_a640	TRINITY_DN44826_c0_g1	591	611	602	-24.10	-18.50	0.767634854771784	6	2-11,610-601;13-21,599-591	1-1,611-611[UP5];12-12,600-600[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	GGUAUAUUGGUCAAGGAAAUA&GAUUUUUUUGAGUAAUAUAUC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN44826_c0_g1_602_TPlot.pdf
TRINITY_DN44829_c0_g1:18	si_s68	TRINITY_DN44829_c0_g1	7	27	18	-23.10	-17.70	0.766233766233766	7	2-18,26-10	1-1,27-27[UP5];19-21,9-7[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CGCGAAAAAAAAUGGGGGUUA&CAACUUCUAUUUUUUUUCUUU	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN44829_c0_g1_18_TPlot.pdf
TRINITY_DN44829_c0_g1:19	si_s67	TRINITY_DN44829_c0_g1	8	28	19	-25.60	-17.70	0.69140625	8	3-19,26-10	1-2,28-27[UP5];20-21,9-8[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCGAAAAAAAAUGGGGGUUAC&GCAACUUCUAUUUUUUUUCUU	2	0.999944277087014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN44829_c0_g1_19_TPlot.pdf
TRINITY_DN4482_c0_g1:386	si_s67	TRINITY_DN4482_c0_g1	374	395	386	-25.60	-17.00	0.6640625	6	1-9,395-387;11-16,385-380;18-20,377-375	10-10,386-386[SIL];17-17,379-378[AILt];21-21,374-374[UP3]	.(((..((((((.(((((((((&))))))))).))))))-.))).	CGGACCAAGAAAGAGAAGUUGC&GCAACUUCUAUUUUUU-UUCUU	3	0.99999999999714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4482_c0_g1_386_TPlot.pdf
TRINITY_DN4482_c0_g1:387	si_s66	TRINITY_DN4482_c0_g1	375	396	387	-26.30	-17.10	0.650190114068441	6	2-10,395-387;12-17,385-380;19-21,377-375	1-1,396-396[UP5];11-11,386-386[SIL];18-18,379-378[AILt]	(((..((((((.(((((((((.&.))))))))).))))))-.)))	GGACCAAGAAAGAGAAGUUGCA&AGCAACUUCUAUUUUUU-UUCU	3	0.99999999998526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN4482_c0_g1_387_TPlot.pdf
TRINITY_DN4482_c1_g1:24	si_a757	TRINITY_DN4482_c1_g1	13	33	24	-33.10	-21.90	0.661631419939577	9.5	2-7,32-27;10-18,24-16	1-1,33-33[UP5];8-9,26-25[SIL];19-21,15-13[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	ACACAAGAACCUUCAGGAGGA&ACCUCCUUUGGGUUUUUGAUU	4	0.999999996625536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4482_c1_g1_24_TPlot.pdf
TRINITY_DN44837_c0_g1:1943	si_a880	TRINITY_DN44837_c0_g1	1931	1952	1943	-27.80	-19.40	0.697841726618705	10	4-13,1949-1940;15-20,1937-1932	1-3,1952-1950[UP5];14-14,1939-1938[AILt];21-21,1931-1931[UP3]	.((((((..((((((((((...&...))))))))))-.)))))).	AGCUAUGCCUGAUUGCAGCAGC&UUAGUUGCAAUCA-AUAUAGUA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN44837_c0_g1_1943_TPlot.pdf
TRINITY_DN44840_c0_g1:369	si_s78	TRINITY_DN44840_c0_g1	358	381	369	-26.20	-17.30	0.66030534351145	9.5	1-9,381-373;10-13,369-366;15-20,364-359	x-x,372-370[BULt];14-14,365-365[SIL];21-21,358-358[UP3]	.((((((.((((...(((((((((&)))))))))---)))).)))))).	CGAAGAGUGGAAUACAGAAAGAAA&UUUUUUUCU---UUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN44840_c0_g1_369_TPlot.pdf
TRINITY_DN44840_c0_g1:373	si_s77	TRINITY_DN44840_c0_g1	359	382	373	-25.50	-17.70	0.694117647058824	8.5	1-10,382-373;11-14,369-366;16-21,364-359	x-x,372-370[BULt];15-15,365-365[SIL]	((((((.((((...((((((((((&))))))))))---)))).))))))	GAAGAGUGGAAUACAGAAAGAAAA&UUUUUUUUCU---UUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN44840_c0_g1_373_TPlot.pdf
TRINITY_DN44840_c0_g1:374	si_s76	TRINITY_DN44840_c0_g1	360	383	374	-23.60	-15.70	0.665254237288135	8.5	1-11,383-373;12-15,369-366;17-21,364-360	x-x,372-370[BULt];16-16,365-365[SIL]	(((((.((((...(((((((((((&)))))))))))---)))).)))))	AAGAGUGGAAUACAGAAAGAAAAU&AUUUUUUUUCU---UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44840_c0_g1_374_TPlot.pdf
TRINITY_DN44840_c0_g1:375	si_s75	TRINITY_DN44840_c0_g1	361	384	375	-24.00	-15.60	0.65	9	1-12,384-373;13-16,369-366;18-21,364-361	x-x,372-370[BULt];17-17,365-365[SIL]	((((.((((...((((((((((((&))))))))))))---)))).))))	AGAGUGGAAUACAGAAAGAAAAUG&UAUUUUUUUUCU---UUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN44840_c0_g1_375_TPlot.pdf
TRINITY_DN44840_c0_g1:376	si_s74	TRINITY_DN44840_c0_g1	362	385	376	-25.00	-17.00	0.68	6.5	1-13,385-373;14-17,369-366;19-21,364-362	x-x,372-370[BULt];18-18,365-365[SIL]	(((.((((...(((((((((((((&)))))))))))))---)))).)))	GAGUGGAAUACAGAAAGAAAAUGG&CUAUUUUUUUUCU---UUCCUUUC	2	0.999999999999915	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN44840_c0_g1_376_TPlot.pdf
TRINITY_DN44840_c0_g1:385	si_s809	TRINITY_DN44840_c0_g1	373	394	385	-28.50	-18.60	0.652631578947368	8	1-3,394-392;5-11,390-384;12-18,382-376	4-4,391-391[SIL];x-x,383-383[BULt];19-21,375-373[UP3]	...(((((((.(((((((.(((&))).)))))))-)))))))...	AGAAAGAAAAUGGUGACGUAGA&UCUUCGUUACC-UUUUCUUAAU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN44840_c0_g1_385_TPlot.pdf
TRINITY_DN44840_c0_g1:386	si_s808	TRINITY_DN44840_c0_g1	374	395	386	-28.60	-19.90	0.695804195804196	7	1-4,395-392;6-12,390-384;13-19,382-376	5-5,391-391[SIL];x-x,383-383[BULt];20-21,375-374[UP3]	..(((((((.(((((((.((((&)))).)))))))-)))))))..	GAAAGAAAAUGGUGACGUAGAU&AUCUUCGUUACC-UUUUCUUAA	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN44840_c0_g1_386_TPlot.pdf
TRINITY_DN44840_c0_g1:387	si_s807	TRINITY_DN44840_c0_g1	375	396	387	-28.90	-21.20	0.73356401384083	5	1-5,396-392;7-13,390-384;14-20,382-376	6-6,391-391[SIL];x-x,383-383[BULt];21-21,375-375[UP3]	.(((((((.(((((((.(((((&))))).)))))))-))))))).	AAAGAAAAUGGUGACGUAGAUA&UAUCUUCGUUACC-UUUUCUUA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN44840_c0_g1_387_TPlot.pdf
TRINITY_DN44840_c0_g1:388	si_s806	TRINITY_DN44840_c0_g1	376	397	388	-28.60	-21.80	0.762237762237762	4	1-6,397-392;8-14,390-384;15-21,382-376	7-7,391-391[SIL];x-x,383-383[BULt]	(((((((.(((((((.((((((&)))))).)))))))-)))))))	AAGAAAAUGGUGACGUAGAUAA&UUAUCUUCGUUACC-UUUUCUU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN44840_c0_g1_388_TPlot.pdf
TRINITY_DN44840_c0_g1:389	si_s805	TRINITY_DN44840_c0_g1	377	398	389	-28.60	-21.30	0.744755244755245	4.5	1-7,398-392;9-15,390-384;16-21,382-377	8-8,391-391[SIL];x-x,383-383[BULt]	((((((.(((((((.(((((((&))))))).)))))))-))))))	AGAAAAUGGUGACGUAGAUAAG&UUUAUCUUCGUUACC-UUUUCU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN44840_c0_g1_389_TPlot.pdf
TRINITY_DN44840_c0_g1:390	si_s804	TRINITY_DN44840_c0_g1	378	399	390	-27.90	-20.40	0.731182795698925	5.5	2-8,398-392;10-16,390-384;17-21,382-378	1-1,399-399[UP5];9-9,391-391[SIL];x-x,383-383[BULt]	(((((.(((((((.(((((((.&.))))))).)))))))-)))))	GAAAAUGGUGACGUAGAUAAGG&UUUUAUCUUCGUUACC-UUUUC	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN44840_c0_g1_390_TPlot.pdf
TRINITY_DN44840_c0_g1:391	si_s803	TRINITY_DN44840_c0_g1	379	400	391	-26.00	-17.20	0.661538461538462	7.5	3-9,398-392;11-17,390-384;18-21,382-379	1-2,400-399[UP5];10-10,391-391[SIL];x-x,383-383[BULt]	((((.(((((((.(((((((..&..))))))).)))))))-))))	AAAAUGGUGACGUAGAUAAGGA&AUUUUAUCUUCGUUACC-UUUU	2	0.999999995375796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN44840_c0_g1_391_TPlot.pdf
TRINITY_DN44840_c0_g1:392	si_s802	TRINITY_DN44840_c0_g1	381	401	392	-26.40	-17.20	0.651515151515151	11.5	4-10,398-392;12-18,390-384	1-3,401-399[UP5];11-11,391-391[SIL];19-21,383-381[UP3]	...(((((((.(((((((...&...))))))).)))))))...	AAUGGUGACGUAGAUAAGGAC&UAUUUUAUCUUCGUUACCUUU	2	0.999999975792993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN44840_c0_g1_392_TPlot.pdf
TRINITY_DN44840_c0_g1:394	si_s800	TRINITY_DN44840_c0_g1	383	402	394	-29.70	-20.40	0.686868686868687	6.5	1-3,402-400;5-12,399-392;14-20,390-384	4-4,x-x[BULq];13-13,391-391[SIL];21-21,383-383[UP3]	.(((((((.((((((((-(((&))).)))))))).))))))).	UGGUGACGUAGAUAAGG-ACG&CGUAUUUUAUCUUCGUUACCU	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN44840_c0_g1_394_TPlot.pdf
TRINITY_DN44840_c0_g1:395	si_s799	TRINITY_DN44840_c0_g1	384	403	395	-30.00	-21.60	0.72	5.5	1-4,403-400;6-13,399-392;15-21,390-384	5-5,x-x[BULq];14-14,391-391[SIL]	(((((((.((((((((-((((&)))).)))))))).)))))))	GGUGACGUAGAUAAGG-ACGA&UCGUAUUUUAUCUUCGUUACC	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN44840_c0_g1_395_TPlot.pdf
TRINITY_DN44844_c0_g1:1772	si_a671	TRINITY_DN44844_c0_g1	1762	1782	1772	-32.10	-22.50	0.700934579439252	6	2-6,1781-1777;7-12,1775-1770;14-21,1769-1762	1-1,1782-1782[UP5];x-x,1776-1776[BULt];13-13,x-x[BULq]	((((((((-((((((.(((((.&.)))))-)))))).))))))))	CGCGUGAA-AAGGAACUCGGUU&UAUUGA-UUCCUUAUUCACGCG	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a671_TRINITY_DN44844_c0_g1_1772_TPlot.pdf
TRINITY_DN44845_c0_g1:1542	si_s523	TRINITY_DN44845_c0_g1	1531	1551	1542	-24.50	-18.00	0.73469387755102	4	1-7,1551-1545;9-21,1543-1531	8-8,1544-1544[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	CAAGAAUGGUUUUCAAUUAAG&CUUAAUUCGAAAUCAUUUUUG	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN44845_c0_g1_1542_TPlot.pdf
TRINITY_DN44847_c0_g1:211	si_a495	TRINITY_DN44847_c0_g1	200	220	211	-31.90	-22.00	0.689655172413793	7.5	1-4,220-217;6-14,215-207;16-20,205-201	5-5,216-216[SIL];15-15,206-206[SIL];21-21,200-200[UP3]	.(((((.(((((((((.((((&)))).))))))))).))))).	AGGAGAGGAAGAACGGGAUGU&AUAUGUCGUUUUUCGUCUUCC	2	0.998651692302393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN44847_c0_g1_211_TPlot.pdf
TRINITY_DN44857_c0_g1:1777	si_s321	TRINITY_DN44857_c0_g1	1768	1786	1777	-31.00	-20.46	0.66	7.5	1-11,1786-1776;17-21,1772-1768	12-16,1775-1773[AILq]	(((((...--(((((((((((&))))))))))).....)))))	GUGUGACG--GACAAGAAGGA&UCCUUCUUGUUACAAACAUAC	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN44857_c0_g1_1777_TPlot.pdf
TRINITY_DN44857_c0_g1:1778	si_s320	TRINITY_DN44857_c0_g1	1767	1787	1778	-31.00	-20.16	0.650322580645161	7.5	2-12,1786-1776;17-20,1771-1768	1-1,1787-1787[UP5];13-16,1775-1772[SIL];21-21,1767-1767[UP3]	.((((....(((((((((((.&.)))))))))))....)))).	GGUGUGACGGACAAGAAGGAA&GUCCUUCUUGUUACAAACAUA	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN44857_c0_g1_1778_TPlot.pdf
TRINITY_DN44857_c0_g1:1783	si_s86	TRINITY_DN44857_c0_g1	1762	1792	1783	-32.90	-21.60	0.656534954407295	16	3-14,1790-1779;15-21,1768-1762	1-2,1792-1791[UP5];x-x,1778-1769[BULt]	(((((((..........((((((((((((..&..))))))))))))----------)))))))	GGCGAGGUGUGACGGACAAGAAGGAAGGGCU&UUUCCUUUCUUCUU----------CUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN44857_c0_g1_1783_TPlot.pdf
TRINITY_DN44857_c0_g1:2439	si_s378	TRINITY_DN44857_c0_g1	2428	2452	2439	-43.80	-28.70	0.655251141552511	17	2-9,2451-2444;10-16,2439-2433	1-1,2452-2452[UP5];x-x,2443-2440[BULt];17-21,2432-2428[UP3]	.....(((((((....((((((((.&.))))))))----))))))).....	AAUACGGCGGGCAGAUGCGCGGGCU&CGCUCGCGU----GUCCGCCUUACA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN44857_c0_g1_2439_TPlot.pdf
TRINITY_DN44857_c0_g1:2444	si_s377	TRINITY_DN44857_c0_g1	2429	2453	2444	-44.10	-28.70	0.650793650793651	18	3-10,2451-2444;11-17,2439-2433	1-2,2453-2452[UP5];x-x,2443-2440[BULt];18-21,2432-2429[UP3]	....(((((((....((((((((..&..))))))))----)))))))....	AUACGGCGGGCAGAUGCGCGGGCUU&UCGCUCGCGU----GUCCGCCUUAC	2	0.992673290620823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN44857_c0_g1_2444_TPlot.pdf
TRINITY_DN44857_c0_g1:2445	si_s376	TRINITY_DN44857_c0_g1	2430	2454	2445	-42.50	-28.70	0.675294117647059	18.5	4-11,2451-2444;12-18,2439-2433	1-3,2454-2452[UP5];x-x,2443-2440[BULt];19-21,2432-2430[UP3]	...(((((((....((((((((...&...))))))))----)))))))...	UACGGCGGGCAGAUGCGCGGGCUUG&AUCGCUCGCGU----GUCCGCCUUA	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN44857_c0_g1_2445_TPlot.pdf
TRINITY_DN44857_c0_g1:2455	si_s784	TRINITY_DN44857_c0_g1	2444	2463	2455	-31.10	-20.52	0.659807073954984	13	1-6,2463-2458;11-19,2454-2446	7-10,2457-2455[AILq];20-21,2445-2444[UP3]	..(((((((((...-((((((&))))))....)))))))))..	GCGCGGGCUUGGCA-GUGGCA&UGCUAUAAAACAAGCUCGUAU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s784_TRINITY_DN44857_c0_g1_2455_TPlot.pdf
TRINITY_DN44857_c0_g1:2457	si_s782	TRINITY_DN44857_c0_g1	2446	2465	2457	-30.70	-20.52	0.668403908794788	14	3-8,2463-2458;13-21,2454-2446	1-2,2465-2464[UP5];9-12,2457-2455[AILq]	(((((((((...-((((((..&..))))))....)))))))))	GCGGGCUUGGCA-GUGGCAUG&AUUGCUAUAAAACAAGCUCGU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s782_TRINITY_DN44857_c0_g1_2457_TPlot.pdf
TRINITY_DN44857_c0_g1:2587	si_s83	TRINITY_DN44857_c0_g1	2576	2596	2587	-30.90	-20.10	0.650485436893204	7	1-6,2596-2591;8-18,2589-2579	7-7,2590-2590[SIL];19-21,2578-2576[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	GCCGAAGAAGAAAGAAGAGGA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN44857_c0_g1_2587_TPlot.pdf
TRINITY_DN44857_c0_g1:2589	si_s81	TRINITY_DN44857_c0_g1	2578	2598	2589	-28.90	-20.30	0.70242214532872	8	3-8,2596-2591;10-20,2589-2579	1-2,2598-2597[UP5];9-9,2590-2590[SIL];21-21,2578-2578[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	CGAAGAAGAAAGAAGAGGAUG&UUUUCUUUCCUUUCUUCUUCU	2	0.999999999997118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN44857_c0_g1_2589_TPlot.pdf
TRINITY_DN44857_c0_g1:2590	si_s80	TRINITY_DN44857_c0_g1	2579	2599	2590	-28.20	-20.00	0.709219858156028	9	4-9,2596-2591;11-21,2589-2579	1-3,2599-2597[UP5];10-10,2590-2590[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAAGAAAGAAGAGGAUGA&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999980406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN44857_c0_g1_2590_TPlot.pdf
TRINITY_DN44857_c0_g1:3211	si_a633	TRINITY_DN44857_c0_g1	3199	3219	3211	-26.40	-18.00	0.681818181818182	6.5	1-5,3219-3215;7-15,3214-3206;16-20,3204-3200	6-6,x-x[BULq];x-x,3205-3205[BULt];21-21,3199-3199[UP3]	.(((((.(((((((((-(((((&))))).)))))))))-))))).	GACUCGUAAAAGAUCG-CAUGA&UUAUGUCGAUUUUUU-UGAGUA	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN44857_c0_g1_3211_TPlot.pdf
TRINITY_DN44864_c0_g1:787	si_s894	TRINITY_DN44864_c0_g1	776	796	787	-29.10	-22.30	0.766323024054983	10.5	4-18,793-779	1-3,796-794[UP5];19-21,778-776[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUCUUGGAGGGGAAGCCUCCA&AAUAGGCUUUCUCUUCAAUUU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN44864_c0_g1_787_TPlot.pdf
TRINITY_DN44864_c0_g1:788	si_s893	TRINITY_DN44864_c0_g1	777	797	788	-29.10	-22.30	0.766323024054983	11	5-19,793-779	1-4,797-794[UP5];20-21,778-777[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCUUGGAGGGGAAGCCUCCAA&AAAUAGGCUUUCUCUUCAAUU	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN44864_c0_g1_788_TPlot.pdf
TRINITY_DN44864_c0_g1:789	si_s892	TRINITY_DN44864_c0_g1	778	798	789	-29.50	-22.30	0.755932203389831	12	6-20,793-779	1-5,798-794[UP5];21-21,778-778[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUUGGAGGGGAAGCCUCCAAU&UAAAUAGGCUUUCUCUUCAAU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN44864_c0_g1_789_TPlot.pdf
TRINITY_DN44864_c0_g1:790	si_s891	TRINITY_DN44864_c0_g1	779	799	790	-29.60	-22.20	0.75	12.5	7-21,793-779	1-6,799-794[UP5]	(((((((((((((((......&......)))))))))))))))	UUGGAGGGGAAGCCUCCAAUG&AUAAAUAGGCUUUCUCUUCAA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN44864_c0_g1_790_TPlot.pdf
TRINITY_DN44864_c0_g1:792	si_s889	TRINITY_DN44864_c0_g1	781	801	792	-28.80	-19.80	0.6875	16.5	9-21,793-781	1-8,801-794[UP5]	(((((((((((((........&........)))))))))))))	GGAGGGGAAGCCUCCAAUGAU&AAAUAAAUAGGCUUUCUCUUC	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN44864_c0_g1_792_TPlot.pdf
TRINITY_DN44864_c0_g1:793	si_s888	TRINITY_DN44864_c0_g1	782	802	793	-26.80	-17.70	0.66044776119403	18.5	10-21,793-782	1-9,802-794[UP5]	((((((((((((.........&.........))))))))))))	GAGGGGAAGCCUCCAAUGAUG&AAAAUAAAUAGGCUUUCUCUU	2	0.999060199882597	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN44864_c0_g1_793_TPlot.pdf
TRINITY_DN44867_c0_g1:796	si_s76	TRINITY_DN44867_c0_g1	784	805	796	-23.60	-17.20	0.728813559322034	9.5	5-15,801-791;16-21,789-784	1-4,805-802[UP5];x-x,790-790[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	AGGAAAUGGAGAGAAAAAUCAU&AUUUUUUUUCUUUCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44867_c0_g1_796_TPlot.pdf
TRINITY_DN44869_c0_g1:3281	si_a68	TRINITY_DN44869_c0_g1	3270	3291	3281	-25.40	-17.72	0.697637795275591	10.5	1-8,3291-3284;12-20,3279-3271	9-11,3283-3280[AILt];21-21,3270-3270[UP3]	.(((((((((....((((((((&))))))))-...))))))))).	AGAGAAACAAAAAAGGAAGAAG&CUUCUUUC-AAAUUGUUUUUCA	2	0.999639564237272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN44869_c0_g1_3281_TPlot.pdf
TRINITY_DN4487_c0_g1:1104	si_a777	TRINITY_DN4487_c0_g1	1093	1114	1104	-27.00	-19.40	0.718518518518518	7.5	1-9,1114-1106;11-20,1103-1094	10-10,1105-1104[AILt];21-21,1093-1093[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	CGAAGUGGAAGCUGUUGAAUUA&UGAUUCAAC-UCUUCUAUUUUU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN4487_c0_g1_1104_TPlot.pdf
TRINITY_DN4487_c0_g1:1106	si_a776	TRINITY_DN4487_c0_g1	1094	1115	1106	-27.10	-20.30	0.749077490774908	6.5	1-10,1115-1106;12-21,1103-1094	11-11,1105-1104[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	GAAGUGGAAGCUGUUGAAUUAA&UUGAUUCAAC-UCUUCUAUUUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN4487_c0_g1_1106_TPlot.pdf
TRINITY_DN4487_c0_g1:1859	si_s610	TRINITY_DN4487_c0_g1	1846	1868	1859	-27.20	-17.70	0.650735294117647	8	3-12,1866-1857;14-19,1854-1849;20-21,1847-1846	1-2,1868-1867[UP5];13-13,1856-1855[AILt];x-x,1848-1848[BULt]	((.((((((..((((((((((..&..))))))))))-.))))))-))	CGACUUGGAAAUUAAGAAAGAAC&AAUCUUUUUUAA-AUCCAAG-CG	4	0.999067011191199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN4487_c0_g1_1859_TPlot.pdf
TRINITY_DN4487_c0_g1:3470	si_a128	TRINITY_DN4487_c0_g1	3459	3479	3470	-23.20	-15.50	0.668103448275862	4	2-14,3478-3466;17-21,3463-3459	1-1,3479-3479[UP5];15-16,3465-3464[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AUUGACAAUUAUUGCUAUAAC&UUUAUAGCAAUAGUAAUUAAU	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN4487_c0_g1_3470_TPlot.pdf
TRINITY_DN4487_c0_g1:439	si_a315	TRINITY_DN4487_c0_g1	427	449	439	-27.00	-18.90	0.7	7	1-7,449-443;9-13,440-436;14-20,434-428	8-8,442-441[AILt];x-x,435-435[BULt];21-21,427-427[UP3]	.(((((((.(((((..(((((((&)))))))-.)))))-))))))).	CAGAGAUCAAUGGAAGAAAUCCA&UGGAUUU-AUCCAU-GAUUUUUU	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN4487_c0_g1_439_TPlot.pdf
TRINITY_DN4487_c0_g1:440	si_a314	TRINITY_DN4487_c0_g1	428	450	440	-27.10	-19.30	0.712177121771218	6.5	1-8,450-443;10-14,440-436;15-21,434-428	9-9,442-441[AILt];x-x,435-435[BULt]	(((((((.(((((..((((((((&))))))))-.)))))-)))))))	AGAGAUCAAUGGAAGAAAUCCAG&UUGGAUUU-AUCCAU-GAUUUUU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN4487_c0_g1_440_TPlot.pdf
TRINITY_DN4487_c0_g1:541	si_s174	TRINITY_DN4487_c0_g1	530	549	541	-39.00	-26.20	0.671794871794872	7	1-3,549-547;5-19,546-532	4-4,x-x[BULq];20-21,531-530[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	CCUGCUUGGGUAUUUUU-CCC&GGGUAAAGAUGCCCGAGUAAC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN4487_c0_g1_541_TPlot.pdf
TRINITY_DN4487_c0_g1:840	si_s389	TRINITY_DN4487_c0_g1	823	849	840	-38.40	-25.70	0.669270833333333	10	1-7,849-843;9-14,841-836;15-21,829-823	8-8,842-842[SIL];x-x,835-830[BULt]	(((((((......((((((.(((((((&))))))).))))))------)))))))	CUUCCUUCUCAAAGGAAUGAAGGGUGG&CCGCCUUACAUUCC------AAGGAAG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s389_TRINITY_DN4487_c0_g1_840_TPlot.pdf
TRINITY_DN4488_c0_g1:1238	si_a896	TRINITY_DN4488_c0_g1	1226	1247	1238	-21.60	-14.60	0.675925925925926	3.5	1-14,1247-1234;15-21,1232-1226	x-x,1233-1233[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	UUAUAUUGAUUUAUUGUUAUUA&UAGUAAUAAUAAGU-AAUAUAA	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN4488_c0_g1_1238_TPlot.pdf
TRINITY_DN448_c0_g1:747	si_s76	TRINITY_DN448_c0_g1	736	756	747	-23.60	-15.90	0.673728813559322	12.5	6-17,751-740;19-21,738-736	1-5,756-752[UP5];18-18,739-739[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	AAGUGAGGAAGGAAAGCCUAU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN448_c0_g1_747_TPlot.pdf
TRINITY_DN448_c0_g1:748	si_s894	TRINITY_DN448_c0_g1	735	757	748	-29.10	-20.90	0.718213058419244	8.5	1-11,757-747;12-17,744-739	x-x,746-745[BULt];18-21,738-735[UP3]	....((((((..(((((((((((&)))))))))))--))))))....	UAAGUGAGGAAGGAAAGCCUAUU&AAUAGGCUUUC--UCUUCAAUUU	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN448_c0_g1_748_TPlot.pdf
TRINITY_DN448_c0_g1:750	si_s892	TRINITY_DN448_c0_g1	737	759	750	-29.50	-21.80	0.738983050847458	5.5	2-13,758-747;14-19,744-739	1-1,759-759[UP5];x-x,746-745[BULt];20-21,738-737[UP3]	..((((((..((((((((((((.&.))))))))))))--))))))..	AGUGAGGAAGGAAAGCCUAUUUC&UAAAUAGGCUUUC--UCUUCAAU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN448_c0_g1_750_TPlot.pdf
TRINITY_DN448_c0_g1:751	si_s891	TRINITY_DN448_c0_g1	738	760	751	-29.60	-21.80	0.736486486486487	6.5	3-14,758-747;15-20,744-739	1-2,760-759[UP5];x-x,746-745[BULt];21-21,738-738[UP3]	.((((((..((((((((((((..&..))))))))))))--)))))).	GUGAGGAAGGAAAGCCUAUUUCA&AUAAAUAGGCUUUC--UCUUCAA	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN448_c0_g1_751_TPlot.pdf
TRINITY_DN448_c0_g1:752	si_s890	TRINITY_DN448_c0_g1	739	761	752	-29.50	-21.60	0.732203389830508	7.5	4-15,758-747;16-21,744-739	1-3,761-759[UP5];x-x,746-745[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	UGAGGAAGGAAAGCCUAUUUCAC&AAUAAAUAGGCUUUC--UCUUCA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN448_c0_g1_752_TPlot.pdf
TRINITY_DN448_c0_g1:753	si_s889	TRINITY_DN448_c0_g1	743	762	753	-28.80	-21.10	0.732638888888889	8	5-16,758-747;18-21,746-743	1-4,762-759[UP5];17-17,x-x[BULq]	((((-((((((((((((....&....)))))))))))).))))	GAAG-GAAAGCCUAUUUCACU&AAAUAAAUAGGCUUUCUCUUC	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN448_c0_g1_753_TPlot.pdf
TRINITY_DN448_c0_g1:754	si_s888	TRINITY_DN448_c0_g1	744	763	754	-26.80	-17.90	0.667910447761194	10	6-17,758-747;19-21,746-744	1-5,763-759[UP5];18-18,x-x[BULq]	(((-((((((((((((.....&.....)))))))))))).)))	AAG-GAAAGCCUAUUUCACUA&AAAAUAAAUAGGCUUUCUCUU	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN448_c0_g1_754_TPlot.pdf
TRINITY_DN448_c0_g1:755	si_s887	TRINITY_DN448_c0_g1	744	764	755	-26.80	-17.50	0.652985074626866	13.5	7-19,758-746	1-6,764-759[UP5];20-21,745-744[UP3]	..(((((((((((((......&......)))))))))))))..	AAGGAAAGCCUAUUUCACUAA&AAAAAUAAAUAGGCUUUCUCU	2	0.995319218271231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN448_c0_g1_755_TPlot.pdf
TRINITY_DN448_c0_g1:756	si_s886	TRINITY_DN448_c0_g1	745	765	756	-26.50	-17.50	0.660377358490566	14.5	8-20,758-746	1-7,765-759[UP5];21-21,745-745[UP3]	.(((((((((((((.......&.......))))))))))))).	AGGAAAGCCUAUUUCACUAAU&UAAAAAUAAAUAGGCUUUCUC	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN448_c0_g1_756_TPlot.pdf
TRINITY_DN448_c0_g1:757	si_s885	TRINITY_DN448_c0_g1	746	766	757	-26.20	-17.30	0.66030534351145	15.5	9-21,758-746	1-8,766-759[UP5]	(((((((((((((........&........)))))))))))))	GGAAAGCCUAUUUCACUAAUA&CUAAAAAUAAAUAGGCUUUCU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s885_TRINITY_DN448_c0_g1_757_TPlot.pdf
TRINITY_DN44902_c0_g1:1212	si_a399	TRINITY_DN44902_c0_g1	1201	1221	1212	-22.60	-15.80	0.699115044247788	8.5	1-5,1221-1217;7-17,1215-1205	6-6,1216-1216[SIL];18-21,1204-1201[UP3]	....(((((((((((.(((((&))))).)))))))))))....	ACACACAGAGCAAUUGUGUAU&AUAUAGAAUUGUUUUGUUUAU	1	0.109571484318288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN44902_c0_g1_1212_TPlot.pdf
TRINITY_DN44902_c0_g1:1213	si_a398	TRINITY_DN44902_c0_g1	1202	1222	1213	-22.40	-16.70	0.745535714285714	7	1-6,1222-1217;8-18,1215-1205	7-7,1216-1216[SIL];19-21,1204-1202[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	CACACAGAGCAAUUGUGUAUU&AAUAUAGAAUUGUUUUGUUUA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN44902_c0_g1_1213_TPlot.pdf
TRINITY_DN44902_c0_g1:1214	si_a397	TRINITY_DN44902_c0_g1	1203	1223	1214	-24.00	-18.00	0.75	6.5	1-7,1223-1217;9-19,1215-1205	8-8,1216-1216[SIL];20-21,1204-1203[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	ACACAGAGCAAUUGUGUAUUU&GAAUAUAGAAUUGUUUUGUUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN44902_c0_g1_1214_TPlot.pdf
TRINITY_DN44902_c0_g1:1216	si_a395	TRINITY_DN44902_c0_g1	1205	1225	1216	-24.70	-18.20	0.736842105263158	8	3-9,1223-1217;11-21,1215-1205	1-2,1225-1224[UP5];10-10,1216-1216[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	ACAGAGCAAUUGUGUAUUUCA&AAGAAUAUAGAAUUGUUUUGU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN44902_c0_g1_1216_TPlot.pdf
TRINITY_DN4490_c0_g1:302	si_s840	TRINITY_DN4490_c0_g1	290	311	302	-32.20	-21.00	0.652173913043478	6	1-11,311-301;14-15,298-297;16-20,295-291	12-13,300-299[SIL];x-x,296-296[BULt];21-21,290-290[UP3]	.(((((.((..(((((((((((&)))))))))))..))-))))).	ACGACUGCGAAUCUUUCGAAUU&AAUUUGAAAGAAGCG-AGUCGA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s840_TRINITY_DN4490_c0_g1_302_TPlot.pdf
TRINITY_DN4490_c0_g1:306	si_a294	TRINITY_DN4490_c0_g1	295	316	306	-28.20	-18.68	0.66241134751773	13	1-5,316-312;11-20,305-296	6-10,311-306[AILt];21-21,295-295[UP3]	.((((((((((......(((((&)))))-.....)))))))))).	UGCGAAUCUUUCGAAUUAUCCA&UGGAU-UUAAAAAAGAUUCGCU	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a294_TRINITY_DN4490_c0_g1_306_TPlot.pdf
TRINITY_DN4490_c0_g1:307	si_a293	TRINITY_DN4490_c0_g1	296	317	307	-27.60	-18.48	0.669565217391304	13	2-6,316-312;12-21,305-296	1-1,317-317[UP5];7-11,311-306[AILt]	((((((((((......(((((.&.)))))-.....))))))))))	GCGAAUCUUUCGAAUUAUCCAU&UUGGAU-UUAAAAAAGAUUCGC	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a293_TRINITY_DN4490_c0_g1_307_TPlot.pdf
TRINITY_DN4491_c0_g1:12817	si_a874	TRINITY_DN4491_c0_g1	12804	12826	12817	-26.70	-17.60	0.659176029962547	8	1-6,12826-12821;8-12,12819-12815;13-21,12812-12804	7-7,12820-12820[SIL];x-x,12814-12813[BULt]	(((((((((..(((((.((((((&)))))).)))))--)))))))))	GUUGAUUGUCGAACUGCAUCUUU&AAAGAUUUAGUU--GCAAUCAAU	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN4491_c0_g1_12817_TPlot.pdf
TRINITY_DN4491_c0_g1:2345	si_s79	TRINITY_DN4491_c0_g1	2333	2354	2345	-26.20	-17.40	0.66412213740458	12	5-15,2350-2340;16-20,2338-2334	1-4,2354-2351[UP5];x-x,2339-2339[BULt];21-21,2333-2333[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	UAGAGGUAGAGGAAAGGGUCCA&UUUUUUCUUUCCUUU-CUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4491_c0_g1_2345_TPlot.pdf
TRINITY_DN4491_c0_g1:2875	si_s297	TRINITY_DN4491_c0_g1	2864	2884	2875	-29.80	-19.60	0.657718120805369	10.5	1-4,2884-2881;6-15,2879-2870	5-5,2880-2880[SIL];16-21,2869-2864[UP3]	......((((((((((.((((&)))).))))))))))......	CGAGGCUGCAGUUCCGUUCGA&UCGAUUGGAAUUGCGAAAAUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN4491_c0_g1_2875_TPlot.pdf
TRINITY_DN4491_c0_g1:3208	si_a183	TRINITY_DN4491_c0_g1	3192	3217	3208	-30.10	-19.60	0.651162790697674	15	2-5,3216-3213;7-12,3211-3206;13-21,3200-3192	1-1,3217-3217[UP5];6-6,3212-3212[SIL];x-x,3205-3201[BULt]	(((((((((.....((((((.((((.&.)))).))))))-----)))))))))	GACGGGGAAAACGAGGAUAUGAUCUC&UAGAUAAUAUCU-----UUCCCUGUU	2	0.983951203433408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN4491_c0_g1_3208_TPlot.pdf
TRINITY_DN4491_c0_g1:3621	si_s79	TRINITY_DN4491_c0_g1	3609	3630	3621	-26.20	-18.30	0.698473282442748	6	1-11,3630-3620;12-18,3618-3612	x-x,3619-3619[BULt];19-21,3611-3609[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UAAAAGAAAGAGAAAGAAAGAA&UUUUUUCUUUC-CUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4491_c0_g1_3621_TPlot.pdf
TRINITY_DN4491_c0_g1:3622	si_s78	TRINITY_DN4491_c0_g1	3610	3631	3622	-26.20	-18.40	0.702290076335878	6	2-12,3630-3620;13-19,3618-3612	1-1,3631-3631[UP5];x-x,3619-3619[BULt];20-21,3611-3610[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	AAAAGAAAGAGAAAGAAAGAAC&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4491_c0_g1_3622_TPlot.pdf
TRINITY_DN4491_c0_g1:3623	si_s77	TRINITY_DN4491_c0_g1	3611	3632	3623	-25.50	-18.40	0.72156862745098	6	3-13,3630-3620;14-20,3618-3612	1-2,3632-3631[UP5];x-x,3619-3619[BULt];21-21,3611-3611[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	AAAGAAAGAGAAAGAAAGAACA&UUUUUUUUCUUUC-CUUUCUUC	2	0.999999999996894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4491_c0_g1_3623_TPlot.pdf
TRINITY_DN4491_c0_g1:3624	si_s76	TRINITY_DN4491_c0_g1	3612	3633	3624	-23.60	-18.40	0.779661016949152	7	4-14,3630-3620;15-21,3618-3612	1-3,3633-3631[UP5];x-x,3619-3619[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AAGAAAGAGAAAGAAAGAACAA&AUUUUUUUUCUUUC-CUUUCUU	2	0.999999210370534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4491_c0_g1_3624_TPlot.pdf
TRINITY_DN4491_c0_g1:3625	si_s75	TRINITY_DN4491_c0_g1	3613	3634	3625	-24.00	-17.50	0.729166666666667	9	5-15,3630-3620;16-21,3618-3613	1-4,3634-3631[UP5];x-x,3619-3619[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	AGAAAGAGAAAGAAAGAACAAC&UAUUUUUUUUCUUUC-CUUUCU	2	0.999999999611507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4491_c0_g1_3625_TPlot.pdf
TRINITY_DN4491_c0_g1:7757	si_a603	TRINITY_DN4491_c0_g1	7746	7770	7757	-29.80	-20.80	0.697986577181208	13.5	1-7,7770-7764;8-19,7759-7748	x-x,7763-7760[BULt];20-21,7747-7746[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	GAGGUUGGAGUUGCUGUCGAGGAUU&AAUUUUC----GCAAUUCCAAUCGA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN4491_c0_g1_7757_TPlot.pdf
TRINITY_DN4491_c0_g1:7973	si_s602	TRINITY_DN4491_c0_g1	7962	7982	7973	-28.10	-18.40	0.654804270462633	8	1-2,7982-7981;5-18,7978-7965	3-4,7980-7979[SIL];19-21,7964-7962[UP3]	...((((((((((((((..((&))..))))))))))))))...	AAGAAAAAAGGUUCGCUCAGA&UCCAAGCGAAUCUUUUUUAAA	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN4491_c0_g1_7973_TPlot.pdf
TRINITY_DN4491_c0_g1:8168	si_s39	TRINITY_DN4491_c0_g1	8157	8177	8168	-22.30	-14.90	0.668161434977579	9	3-16,8175-8162	1-2,8177-8176[UP5];17-21,8161-8157[UP3]	.....((((((((((((((..&..)))))))))))))).....	CCUGGCAAUUGUUAAAGAUGA&AAAUCUUUAAUAAUUGGAUUU	2	0.998935640275264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN4491_c0_g1_8168_TPlot.pdf
TRINITY_DN4491_c0_g1:8169	si_s38	TRINITY_DN4491_c0_g1	8158	8178	8169	-22.70	-14.90	0.656387665198238	10	4-17,8175-8162	1-3,8178-8176[UP5];18-21,8161-8158[UP3]	....((((((((((((((...&...))))))))))))))....	CUGGCAAUUGUUAAAGAUGAC&UAAAUCUUUAAUAAUUGGAUU	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN4491_c0_g1_8169_TPlot.pdf
TRINITY_DN4491_c0_g1:8210	si_a498	TRINITY_DN4491_c0_g1	8199	8223	8210	-33.50	-23.80	0.71044776119403	13	2-9,8222-8215;10-11,8210-8209;13-21,8207-8199	1-1,8223-8223[UP5];x-x,8214-8211[BULt];12-12,8208-8208[SIL]	(((((((((.((....((((((((.&.))))))))----)).)))))))))	UAAGGAGGAGGAUAAGGAAACGACG&UGUCGUUUU----UCGUCUUCCUUG	3	0.999823841900373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4491_c0_g1_8210_TPlot.pdf
TRINITY_DN4491_c0_g1:8213	si_s82	TRINITY_DN4491_c0_g1	8201	8223	8213	-28.90	-19.90	0.688581314878893	8.5	3-4,8221-8220;5-11,8218-8212;12-21,8210-8201	1-2,8223-8222[UP5];x-x,8219-8219[BULt];x-x,8211-8211[BULt]	((((((((((.(((((((.((..&..))-)))))))-))))))))))	AGGAGGAGGAUAAGGAAACGACG&UUUC-UUUCCUU-UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4491_c0_g1_8213_TPlot.pdf
TRINITY_DN4491_c0_g1:8235	si_s79	TRINITY_DN4491_c0_g1	8222	8244	8235	-26.20	-18.30	0.698473282442748	6.5	1-10,8244-8235;11-15,8233-8229;16-20,8227-8223	x-x,8234-8234[BULt];x-x,8228-8228[BULt];21-21,8222-8222[UP3]	.(((((.(((((.((((((((((&))))))))))-)))))-))))).	CGGAGGUAAAGGAAGAGAAAAAG&UUUUUUCUUU-CCUUU-CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4491_c0_g1_8235_TPlot.pdf
TRINITY_DN4491_c0_g1:8240	si_s69	TRINITY_DN4491_c0_g1	8229	8249	8240	-23.40	-15.30	0.653846153846154	9	3-7,8247-8243;9-20,8241-8230	1-2,8249-8248[UP5];8-8,8242-8242[SIL];21-21,8229-8229[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AAAGGAAGAGAAAAAGGAGGA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4491_c0_g1_8240_TPlot.pdf
TRINITY_DN4491_c0_g1:8241	si_s68	TRINITY_DN4491_c0_g1	8230	8250	8241	-23.10	-15.30	0.662337662337662	9.5	4-8,8247-8243;10-21,8241-8230	1-3,8250-8248[UP5];9-9,8242-8242[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAGGAAGAGAAAAAGGAGGAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4491_c0_g1_8241_TPlot.pdf
TRINITY_DN4491_c0_g1:8349	si_s77	TRINITY_DN4491_c0_g1	8335	8358	8349	-25.50	-18.80	0.737254901960784	6	1-10,8358-8349;11-17,8346-8340;18-21,8338-8335	x-x,8348-8347[BULt];x-x,8339-8339[BULt]	((((.(((((((..((((((((((&))))))))))--)))))))-))))	GAAGUAAAGGAACCAGAAAAAGAA&UUUUUUUUCU--UUCCUUU-CUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4491_c0_g1_8349_TPlot.pdf
TRINITY_DN4491_c0_g1:8350	si_s76	TRINITY_DN4491_c0_g1	8336	8359	8350	-23.60	-15.60	0.661016949152542	7	2-11,8358-8349;12-18,8346-8340;19-21,8338-8336	1-1,8359-8359[UP5];x-x,8348-8347[BULt];x-x,8339-8339[BULt]	(((.(((((((..((((((((((.&.))))))))))--)))))))-)))	AAGUAAAGGAACCAGAAAAAGAAG&AUUUUUUUUCU--UUCCUUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4491_c0_g1_8350_TPlot.pdf
TRINITY_DN4491_c0_g1:8366	si_s79	TRINITY_DN4491_c0_g1	8354	8377	8366	-26.20	-18.40	0.702290076335878	6	2-8,8376-8370;9-13,8367-8363;14-21,8361-8354	1-1,8377-8377[UP5];x-x,8369-8368[BULt];x-x,8362-8362[BULt]	((((((((.(((((..(((((((.&.)))))))--)))))-))))))))	AAGAAGAACAGGAAGCAGAAAAAG&UUUUUUCU--UUCCU-UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4491_c0_g1_8366_TPlot.pdf
TRINITY_DN4491_c0_g1:8917	si_a763	TRINITY_DN4491_c0_g1	8906	8927	8917	-28.80	-19.40	0.673611111111111	10.5	1-5,8927-8923;6-18,8921-8909	x-x,8922-8922[BULt];19-21,8908-8906[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	CAUGUCGAUCGGAGACACCGAG&UUUGG-GUUUUUGAUUGAUUCA	4	0.999999942932217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN4491_c0_g1_8917_TPlot.pdf
TRINITY_DN44923_c0_g1:315	si_s79	TRINITY_DN44923_c0_g1	304	324	315	-26.20	-17.40	0.66412213740458	7	1-10,324-315;13-21,312-304	11-12,314-313[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AAGAAGAAAUAGAGGAGAAAA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN44923_c0_g1_315_TPlot.pdf
TRINITY_DN44923_c0_g1:326	si_s67	TRINITY_DN44923_c0_g1	315	337	326	-25.60	-16.90	0.66015625	11.5	1-2,337-336;5-9,333-329;10-21,326-315	3-4,335-334[SIL];x-x,328-327[BULt]	((((((((((((..(((((..((&))..)))))--))))))))))))	GAGGAGAAAAGUGAAGAGGAGGC&GCAACUUCU--AUUUUUUUUCUU	2	0.999999988091986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN44923_c0_g1_326_TPlot.pdf
TRINITY_DN44925_c0_g1:993	si_a411	TRINITY_DN44925_c0_g1	982	1002	993	-17.90	-11.70	0.653631284916201	9.5	1-7,1002-996;10-18,993-985	8-9,995-994[SIL];19-21,984-982[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	UGGUAUUUGAAUUGAGACGAA&UUUGUUUAUAUUUAAAUAAAU	0	0.495862704435328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN44925_c0_g1_993_TPlot.pdf
TRINITY_DN44925_c0_g1:994	si_a410	TRINITY_DN44925_c0_g1	983	1003	994	-17.80	-12.10	0.679775280898876	9	1-8,1003-996;11-19,993-985	9-10,995-994[SIL];20-21,984-983[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	GGUAUUUGAAUUGAGACGAAG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999239310424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN44925_c0_g1_994_TPlot.pdf
TRINITY_DN44930_c0_g1:1334	si_s436	TRINITY_DN44930_c0_g1	1323	1343	1334	-19.60	-15.10	0.770408163265306	5.5	3-10,1341-1334;12-21,1332-1323	1-2,1343-1342[UP5];11-11,1333-1333[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UGUAUAUAAUUUGUAAUUAAU&AAUAAUUACAUAUUAUAUAUA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN44930_c0_g1_1334_TPlot.pdf
TRINITY_DN44930_c0_g1:213	si_a780	TRINITY_DN44930_c0_g1	197	222	213	-27.30	-17.78	0.651282051282051	15.5	1-11,222-212;15-20,203-198	12-14,211-204[AILt];21-21,197-197[UP3]	.((((((........(((((((((((&)))))))))))-----...)))))).	GGGAAAAUCACAAAUGAAGAGUUGAA&UUCAACUCUUC-----UAUUUUUCUA	4	0.99999999618061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN44930_c0_g1_213_TPlot.pdf
TRINITY_DN44936_c0_g1:164	si_s207	TRINITY_DN44936_c0_g1	152	174	164	-33.00	-22.80	0.690909090909091	9	3-9,172-166;10-16,164-158;17-19,156-154	1-2,174-173[UP5];x-x,165-165[BULt];x-x,157-157[BULt];20-21,153-152[UP3]	..(((.(((((((.(((((((..&..)))))))-)))))))-)))..	CAUCGAAACACAAUCUGGUGCUA&AUGUACCAG-UUGUGUU-CGAAA	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN44936_c0_g1_164_TPlot.pdf
TRINITY_DN44936_c0_g1:166	si_s206	TRINITY_DN44936_c0_g1	153	175	166	-33.00	-22.80	0.690909090909091	10	4-10,172-166;11-17,164-158;18-20,156-154	1-3,175-173[UP5];x-x,165-165[BULt];x-x,157-157[BULt];21-21,153-153[UP3]	.(((.(((((((.(((((((...&...)))))))-)))))))-))).	AUCGAAACACAAUCUGGUGCUAA&AAUGUACCAG-UUGUGUU-CGAA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN44936_c0_g1_166_TPlot.pdf
TRINITY_DN4494_c0_g1:1981	si_s71	TRINITY_DN4494_c0_g1	1970	1990	1981	-25.70	-19.60	0.762645914396887	5.5	2-7,1989-1984;9-20,1982-1971	1-1,1990-1990[UP5];8-8,1983-1983[SIL];21-21,1970-1970[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	CGGAAAGGAAAAAUAUAGGAA&CUUCUAUUUUUUUUCUUUCCU	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4494_c0_g1_1981_TPlot.pdf
TRINITY_DN4494_c0_g1:1982	si_s70	TRINITY_DN4494_c0_g1	1971	1991	1982	-25.80	-19.30	0.748062015503876	6.5	3-8,1989-1984;10-21,1982-1971	1-2,1991-1990[UP5];9-9,1983-1983[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GGAAAGGAAAAAUAUAGGAAC&ACUUCUAUUUUUUUUCUUUCC	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4494_c0_g1_1982_TPlot.pdf
TRINITY_DN4494_c0_g1:2563	si_a188	TRINITY_DN4494_c0_g1	2551	2572	2563	-32.00	-21.00	0.65625	13.5	5-12,2568-2561;14-20,2558-2552	1-4,2572-2569[UP5];13-13,2560-2559[AILt];21-21,2551-2551[UP3]	.(((((((..((((((((....&....))))))))-.))))))).	AGGUGAACUCGGGAAGGGGGCG&AAUAUCUUUCCC-UGUUCACUA	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN4494_c0_g1_2563_TPlot.pdf
TRINITY_DN4494_c0_g1:2572	si_a266	TRINITY_DN4494_c0_g1	2561	2582	2572	-38.30	-25.90	0.676240208877285	9.5	1-4,2582-2579;5-14,2577-2568	x-x,2578-2578[BULt];15-21,2567-2561[UP3]	.......((((((((((.((((&))))-)))))))))).......	GGGAAGGGGGCGUUUGCUCCUC&GAGG-GCAAACGCCUACGAAAA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN4494_c0_g1_2572_TPlot.pdf
TRINITY_DN4494_c0_g1:2573	si_a265	TRINITY_DN4494_c0_g1	2562	2583	2573	-39.80	-26.00	0.653266331658292	9.5	2-5,2582-2579;6-15,2577-2568	1-1,2583-2583[UP5];x-x,2578-2578[BULt];16-21,2567-2562[UP3]	......((((((((((.((((.&.))))-))))))))))......	GGAAGGGGGCGUUUGCUCCUCA&CGAGG-GCAAACGCCUACGAAA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a265_TRINITY_DN4494_c0_g1_2573_TPlot.pdf
TRINITY_DN4494_c0_g1:2581	si_a258	TRINITY_DN4494_c0_g1	2569	2591	2581	-38.60	-26.60	0.689119170984456	10	1-5,2591-2587;8-8,2584-2584;9-12,2582-2579;13-21,2577-2569	6-7,2586-2585[SIL];x-x,2583-2583[BULt];x-x,2578-2578[BULt]	(((((((((.((((.(..(((((&)))))..)-))))-)))))))))	GGCGUUUGCUCCUCAGUCGCGAU&AUUGUAUC-GAGG-GCAAACGCC	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN4494_c0_g1_2581_TPlot.pdf
TRINITY_DN4494_c0_g1:2758	si_s40	TRINITY_DN4494_c0_g1	2744	2767	2758	-24.30	-16.70	0.687242798353909	9.5	3-16,2765-2752;17-21,2748-2744	1-2,2767-2766[UP5];x-x,2751-2749[BULt]	(((((...((((((((((((((..&..))))))))))))))---)))))	GGAAUCUCCCGGUUGUUGAAGACU&AAUCUUUAAUAAUUGG---AUUUC	2	0.935310264859161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN4494_c0_g1_2758_TPlot.pdf
TRINITY_DN4494_c0_g1:2760	si_s38	TRINITY_DN4494_c0_g1	2749	2769	2760	-22.70	-16.00	0.704845814977974	13	5-18,2765-2752	1-4,2769-2766[UP5];19-21,2751-2749[UP3]	...((((((((((((((....&....))))))))))))))...	CUCCCGGUUGUUGAAGACUGG&UAAAUCUUUAAUAAUUGGAUU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN4494_c0_g1_2760_TPlot.pdf
TRINITY_DN4494_c0_g1:2762	si_s36	TRINITY_DN4494_c0_g1	2751	2770	2762	-25.00	-16.40	0.656	9.5	2-4,2769-2767;7-20,2765-2752	1-1,2770-2770[UP5];5-6,2766-2766[AILq];21-21,2751-2751[UP3]	.((((((((((((((.-(((.&.)))..)))))))))))))).	CCCGGUUGUUGAAGAC-UGGA&ACUAAAUCUUUAAUAAUUGGA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN4494_c0_g1_2762_TPlot.pdf
TRINITY_DN4494_c0_g1:2763	si_s35	TRINITY_DN4494_c0_g1	2752	2771	2763	-24.00	-15.60	0.65	10.5	3-5,2769-2767;8-21,2765-2752	1-2,2771-2770[UP5];6-7,2766-2766[AILq]	((((((((((((((.-(((..&..)))..))))))))))))))	CCGGUUGUUGAAGAC-UGGAC&AACUAAAUCUUUAAUAAUUGG	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN4494_c0_g1_2763_TPlot.pdf
TRINITY_DN4494_c0_g1:3330	si_s41	TRINITY_DN4494_c0_g1	3319	3340	3330	-25.00	-17.20	0.688	14	1-6,3340-3335;11-20,3329-3320	7-10,3334-3330[AILt];21-21,3319-3319[UP3]	.((((((((((.....((((((&))))))-....)))))))))).	AGAAGUCCGGUGUGAGGAAGAU&AUCUUU-AAUAAUUGGAUUUCA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN4494_c0_g1_3330_TPlot.pdf
TRINITY_DN44950_c0_g1:1148	si_s248	TRINITY_DN44950_c0_g1	1137	1157	1148	-31.90	-20.80	0.652037617554859	7.5	2-7,1156-1151;9-11,1149-1147;13-21,1145-1137	1-1,1157-1157[UP5];8-8,1150-1150[SIL];12-12,1146-1146[SIL]	(((((((((.(((.((((((.&.)))))).))).)))))))))	UGAUAUGUUUGGAUGUGCCUU&UAGGCAUUUCCCGAUAUAUUA	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN44950_c0_g1_1148_TPlot.pdf
TRINITY_DN44950_c0_g1:847	si_s315	TRINITY_DN44950_c0_g1	837	856	847	-31.60	-20.70	0.65506329113924	8	2-9,855-848;12-16,845-841;18-19,840-839	1-1,856-856[UP5];10-11,847-846[SIL];17-17,x-x[BULq];20-21,838-837[UP3]	..((-(((((..((((((((.&.))))))))..))))).))..	CAGU-ACAAGUUGGACAGAAG&AUUCUGUCCUUCUUGUUACAA	3	0.99999954173757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN44950_c0_g1_847_TPlot.pdf
TRINITY_DN44951_c0_g1:1221	si_a493	TRINITY_DN44951_c0_g1	1210	1230	1221	-29.50	-19.90	0.674576271186441	8	2-16,1229-1215;18-19,1213-1212	1-1,1230-1230[UP5];17-17,1214-1214[SIL];20-21,1211-1210[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	UUGAAGAAAGGCGACGUGUUG&GAAUAUGUCGUUUUUCGUCUU	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN44951_c0_g1_1221_TPlot.pdf
TRINITY_DN44951_c0_g1:1223	si_a491	TRINITY_DN44951_c0_g1	1212	1232	1223	-29.90	-19.50	0.652173913043478	9	4-18,1229-1215;20-21,1213-1212	1-3,1232-1230[UP5];19-19,1214-1214[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAAGAAAGGCGACGUGUUGGA&UAGAAUAUGUCGUUUUUCGUC	4	0.999809637231312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN44951_c0_g1_1223_TPlot.pdf
TRINITY_DN44951_c0_g1:1226	si_a488	TRINITY_DN44951_c0_g1	1215	1235	1226	-26.40	-18.50	0.700757575757576	14	7-21,1229-1215	1-6,1235-1230[UP5]	(((((((((((((((......&......)))))))))))))))	GAAAGGCGACGUGUUGGAUGG&AUAUAGAAUAUGUCGUUUUUC	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN44951_c0_g1_1226_TPlot.pdf
TRINITY_DN44951_c0_g1:2051	si_a533	TRINITY_DN44951_c0_g1	2038	2060	2051	-39.40	-25.80	0.654822335025381	9.5	3-14,2058-2047;15-18,2044-2041	1-2,2060-2059[UP5];x-x,2046-2045[BULt];19-21,2040-2038[UP3]	...((((..((((((((((((..&..))))))))))))--))))...	CAGGGACUUCGAUCGCUUGCGGG&CACGCGAGCGAUCG--GUUCAAU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN44951_c0_g1_2051_TPlot.pdf
TRINITY_DN44951_c0_g1:2213	si_a109	TRINITY_DN44951_c0_g1	2202	2223	2213	-28.50	-18.70	0.656140350877193	8	1-5,2223-2219;7-9,2217-2215;10-20,2213-2203	6-6,2218-2218[SIL];x-x,2214-2214[BULt];21-21,2202-2202[UP3]	.(((((((((((.(((.(((((&))))).)))-))))))))))).	CGGCGAGUUCGUCAUUCUGUCU&AGAUAAAAU-ACGAGCUUGUUU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN44951_c0_g1_2213_TPlot.pdf
TRINITY_DN44951_c0_g1:2215	si_a108	TRINITY_DN44951_c0_g1	2203	2224	2215	-28.50	-19.00	0.666666666666667	8	2-6,2223-2219;8-10,2217-2215;11-21,2213-2203	1-1,2224-2224[UP5];7-7,2218-2218[SIL];x-x,2214-2214[BULt]	(((((((((((.(((.(((((.&.))))).)))-)))))))))))	GGCGAGUUCGUCAUUCUGUCUG&AAGAUAAAAU-ACGAGCUUGUU	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN44951_c0_g1_2215_TPlot.pdf
TRINITY_DN44951_c0_g1:2311	si_s90	TRINITY_DN44951_c0_g1	2299	2320	2311	-35.30	-24.20	0.685552407932011	7	1-11,2320-2310;13-17,2308-2304;19-21,2301-2299	12-12,2309-2309[SIL];18-18,2303-2302[AILt]	(((..(((((.(((((((((((&))))))))))).)))))-.)))	UCGUUGGCGAUGGAGAGGAAAG&CUUUCUUCUUCUUCGCU-UCGG	3	0.99999999873322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN44951_c0_g1_2311_TPlot.pdf
TRINITY_DN44951_c0_g1:2312	si_s89	TRINITY_DN44951_c0_g1	2300	2321	2312	-35.30	-23.40	0.662889518413598	6.5	2-12,2320-2310;14-18,2308-2304;20-21,2301-2300	1-1,2321-2321[UP5];13-13,2309-2309[SIL];19-19,2303-2302[AILt]	((..(((((.(((((((((((.&.))))))))))).)))))-.))	CGUUGGCGAUGGAGAGGAAAGU&CCUUUCUUCUUCUUCGCU-UCG	2	0.999999998974356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN44951_c0_g1_2312_TPlot.pdf
TRINITY_DN44951_c0_g1:2313	si_s88	TRINITY_DN44951_c0_g1	2302	2322	2313	-34.80	-22.70	0.652298850574713	8.5	3-13,2320-2310;15-19,2308-2304	1-2,2322-2321[UP5];14-14,2309-2309[SIL];20-21,2303-2302[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	UUGGCGAUGGAGAGGAAAGUU&UCCUUUCUUCUUCUUCGCUUC	2	0.999999999998617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN44951_c0_g1_2313_TPlot.pdf
TRINITY_DN44951_c0_g1:2314	si_s87	TRINITY_DN44951_c0_g1	2303	2323	2314	-32.90	-22.70	0.689969604863222	9	4-14,2320-2310;16-20,2308-2304	1-3,2323-2321[UP5];15-15,2309-2309[SIL];21-21,2303-2303[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	UGGCGAUGGAGAGGAAAGUUC&UUCCUUUCUUCUUCUUCGCUU	3	0.999999999999945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN44951_c0_g1_2314_TPlot.pdf
TRINITY_DN44951_c0_g1:2315	si_s86	TRINITY_DN44951_c0_g1	2304	2329	2315	-32.90	-23.40	0.711246200607903	13	1-6,2329-2324;7-15,2318-2310;17-21,2308-2304	x-x,2323-2319[BULt];16-16,2309-2309[SIL]	(((((.(((((((((.....((((((&))))))-----))))))))).)))))	GGCGAUGGAGAGGAAAGUUCAGGAAA&UUUCCU-----UUCUUCUUCUUCGCU	3	0.999999986468637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN44951_c0_g1_2315_TPlot.pdf
TRINITY_DN44951_c0_g1:2316	si_s85	TRINITY_DN44951_c0_g1	2305	2330	2316	-33.80	-22.50	0.665680473372781	13.5	2-7,2329-2324;8-16,2318-2310;18-21,2308-2305	1-1,2330-2330[UP5];x-x,2323-2319[BULt];17-17,2309-2309[SIL]	((((.(((((((((.....((((((.&.))))))-----))))))))).))))	GCGAUGGAGAGGAAAGUUCAGGAAAU&CUUUCCU-----UUCUUCUUCUUCGC	2	0.99999999990119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN44951_c0_g1_2316_TPlot.pdf
TRINITY_DN44951_c0_g1:2320	si_s76	TRINITY_DN44951_c0_g1	2309	2330	2320	-23.60	-16.30	0.690677966101695	10	1-7,2330-2324;10-20,2320-2310	8-9,2323-2321[AILt];21-21,2309-2309[UP3]	.(((((((((((...(((((((&)))))))-..))))))))))).	UGGAGAGGAAAGUUCAGGAAAU&AUUUUUU-UUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44951_c0_g1_2320_TPlot.pdf
TRINITY_DN44951_c0_g1:2321	si_s75	TRINITY_DN44951_c0_g1	2310	2331	2321	-24.00	-16.30	0.679166666666667	10	2-8,2330-2324;11-21,2320-2310	1-1,2331-2331[UP5];9-10,2323-2321[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	GGAGAGGAAAGUUCAGGAAAUC&UAUUUUUU-UUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN44951_c0_g1_2321_TPlot.pdf
TRINITY_DN44951_c0_g1:2391	si_s84	TRINITY_DN44951_c0_g1	2378	2401	2391	-32.30	-21.60	0.668730650154799	9.5	1-5,2401-2397;6-10,2395-2391;11-21,2388-2378	x-x,2396-2396[BULt];x-x,2390-2389[BULt]	(((((((((((..(((((.(((((&)))))-)))))--)))))))))))	UGAAGGAGGAGCUGAAGGCGAAGA&UCUUU-CCUUU--CUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN44951_c0_g1_2391_TPlot.pdf
TRINITY_DN44951_c0_g1:2392	si_s83	TRINITY_DN44951_c0_g1	2379	2402	2392	-30.90	-21.80	0.705501618122977	9	1-6,2402-2397;7-11,2395-2391;12-21,2388-2379	x-x,2396-2396[BULt];x-x,2390-2389[BULt]	((((((((((..(((((.((((((&))))))-)))))--))))))))))	GAAGGAGGAGCUGAAGGCGAAGAA&UUCUUU-CCUUU--CUUCUUCUUC	2	0.999999989085539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN44951_c0_g1_2392_TPlot.pdf
TRINITY_DN44951_c0_g1:2393	si_s82	TRINITY_DN44951_c0_g1	2380	2403	2393	-28.90	-19.70	0.681660899653979	9	1-7,2403-2397;8-12,2395-2391;13-21,2388-2380	x-x,2396-2396[BULt];x-x,2390-2389[BULt]	(((((((((..(((((.(((((((&)))))))-)))))--)))))))))	AAGGAGGAGCUGAAGGCGAAGAAA&UUUCUUU-CCUUU--CUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN44951_c0_g1_2393_TPlot.pdf
TRINITY_DN44951_c0_g1:2394	si_s81	TRINITY_DN44951_c0_g1	2381	2404	2394	-28.90	-19.00	0.657439446366782	7.5	2-8,2403-2397;9-13,2395-2391;14-21,2388-2381	1-1,2404-2404[UP5];x-x,2396-2396[BULt];x-x,2390-2389[BULt]	((((((((..(((((.(((((((.&.)))))))-)))))--))))))))	AGGAGGAGCUGAAGGCGAAGAAAG&UUUUCUUU-CCUUU--CUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN44951_c0_g1_2394_TPlot.pdf
TRINITY_DN44951_c0_g1:2395	si_s80	TRINITY_DN44951_c0_g1	2382	2405	2395	-28.20	-19.20	0.680851063829787	7.5	1-9,2405-2397;10-14,2395-2391;15-21,2388-2382	x-x,2396-2396[BULt];x-x,2390-2389[BULt]	(((((((..(((((.(((((((((&)))))))))-)))))--)))))))	GGAGGAGCUGAAGGCGAAGAAAGA&UUUUUCUUU-CCUUU--CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN44951_c0_g1_2395_TPlot.pdf
TRINITY_DN44951_c0_g1:2396	si_s89	TRINITY_DN44951_c0_g1	2384	2405	2396	-35.30	-23.30	0.660056657223796	6.5	2-9,2404-2397;11-15,2395-2391;16-20,2389-2385	1-1,2405-2405[UP5];10-10,2396-2396[SIL];x-x,2390-2390[BULt];21-21,2384-2384[UP3]	.(((((.(((((.((((((((.&.)))))))).)))))-))))).	AGGAGCUGAAGGCGAAGAAAGA&CCUUUCUUCUUCUUC-GCUUCG	2	0.999999999811255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN44951_c0_g1_2396_TPlot.pdf
TRINITY_DN44951_c0_g1:2397	si_s88	TRINITY_DN44951_c0_g1	2385	2406	2397	-34.80	-22.90	0.658045977011494	7.5	3-10,2404-2397;12-16,2395-2391;17-21,2389-2385	1-2,2406-2405[UP5];11-11,2396-2396[SIL];x-x,2390-2390[BULt]	(((((.(((((.((((((((..&..)))))))).)))))-)))))	GGAGCUGAAGGCGAAGAAAGAC&UCCUUUCUUCUUCUUC-GCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN44951_c0_g1_2397_TPlot.pdf
TRINITY_DN44951_c0_g1:2402	si_a494	TRINITY_DN44951_c0_g1	2391	2411	2402	-29.50	-20.20	0.684745762711864	10.5	5-8,2407-2404;10-21,2402-2391	1-4,2411-2408[UP5];9-9,2403-2403[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAAGGCGAAGAAAGACACUCU&AAUAUGUCGUUUUUCGUCUUC	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN44951_c0_g1_2402_TPlot.pdf
TRINITY_DN44951_c0_g1:2426	si_a637	TRINITY_DN44951_c0_g1	2413	2435	2426	-25.80	-18.50	0.717054263565891	11.5	1-11,2435-2425;12-18,2422-2416	x-x,2424-2423[BULt];19-21,2415-2413[UP3]	...(((((((..(((((((((((&)))))))))))--)))))))...	AGCUUGCUCACGAGGAAGUCGGC&GUCGAUUUUUU--UGAGUAAUAU	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN44951_c0_g1_2426_TPlot.pdf
TRINITY_DN44951_c0_g1:2427	si_a636	TRINITY_DN44951_c0_g1	2414	2436	2427	-26.30	-18.70	0.711026615969582	11.5	2-12,2435-2425;13-19,2422-2416	1-1,2436-2436[UP5];x-x,2424-2423[BULt];20-21,2415-2414[UP3]	..(((((((..(((((((((((.&.)))))))))))--)))))))..	GCUUGCUCACGAGGAAGUCGGCU&UGUCGAUUUUUU--UGAGUAAUA	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN44951_c0_g1_2427_TPlot.pdf
TRINITY_DN44951_c0_g1:2430	si_a633	TRINITY_DN44951_c0_g1	2417	2439	2430	-26.40	-17.70	0.670454545454545	12.5	5-15,2435-2425;16-21,2422-2417	1-4,2439-2436[UP5];x-x,2424-2423[BULt]	((((((..(((((((((((....&....)))))))))))--))))))	UGCUCACGAGGAAGUCGGCUGCG&UUAUGUCGAUUUUUU--UGAGUA	3	0.999999978444759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN44951_c0_g1_2430_TPlot.pdf
TRINITY_DN44951_c0_g1:2479	si_s96	TRINITY_DN44951_c0_g1	2468	2488	2479	-37.20	-27.60	0.741935483870968	5	1-11,2488-2478;13-17,2476-2472;19-21,2470-2468	12-12,2477-2477[SIL];18-18,2471-2471[SIL]	(((.(((((.(((((((((((&))))))))))).))))).)))	UCCUGUCUGCAGCGAAGGAGA&UCUUCUUCGCUUCGGAUUGGA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN44951_c0_g1_2479_TPlot.pdf
TRINITY_DN44951_c0_g1:2480	si_s95	TRINITY_DN44951_c0_g1	2469	2489	2480	-36.30	-26.50	0.730027548209366	4	1-12,2489-2478;14-18,2476-2472;20-21,2470-2469	13-13,2477-2477[SIL];19-19,2471-2471[SIL]	((.(((((.((((((((((((&)))))))))))).))))).))	CCUGUCUGCAGCGAAGGAGAA&UUCUUCUUCGCUUCGGAUUGG	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN44951_c0_g1_2480_TPlot.pdf
TRINITY_DN44951_c0_g1:2482	si_s93	TRINITY_DN44951_c0_g1	2471	2491	2482	-34.80	-26.10	0.75	5	2-14,2490-2478;16-20,2476-2472	1-1,2491-2491[UP5];15-15,2477-2477[SIL];21-21,2471-2471[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UGUCUGCAGCGAAGGAGAAGC&UCUUCUUCUUCGCUUCGGAUU	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN44951_c0_g1_2482_TPlot.pdf
TRINITY_DN44951_c0_g1:2483	si_s92	TRINITY_DN44951_c0_g1	2472	2492	2483	-34.90	-26.10	0.74785100286533	6	3-15,2490-2478;17-21,2476-2472	1-2,2492-2491[UP5];16-16,2477-2477[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GUCUGCAGCGAAGGAGAAGCU&UUCUUCUUCUUCGCUUCGGAU	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN44951_c0_g1_2483_TPlot.pdf
TRINITY_DN44951_c0_g1:2484	si_s91	TRINITY_DN44951_c0_g1	2473	2493	2484	-34.70	-24.80	0.714697406340058	7.5	4-16,2490-2478;18-21,2476-2473	1-3,2493-2491[UP5];17-17,2477-2477[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UCUGCAGCGAAGGAGAAGCUG&UUUCUUCUUCUUCGCUUCGGA	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN44951_c0_g1_2484_TPlot.pdf
TRINITY_DN44951_c0_g1:2488	si_s87	TRINITY_DN44951_c0_g1	2477	2511	2488	-32.90	-22.70	0.689969604863222	30.5	1-7,2511-2505;8-20,2490-2478	x-x,2504-2491[BULt];21-21,2477-2477[UP3]	.(((((((((((((..............(((((((&)))))))--------------))))))))))))).	CAGCGAAGGAGAAGCUGAAAACACUGAAGAAGGAA&UUCCUUU--------------CUUCUUCUUCGCUU	3	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN44951_c0_g1_2488_TPlot.pdf
TRINITY_DN44951_c0_g1:2509	si_s84	TRINITY_DN44951_c0_g1	2498	2518	2509	-32.30	-22.90	0.708978328173375	8	2-17,2517-2502	1-1,2518-2518[UP5];18-21,2501-2498[UP3]	....((((((((((((((((.&.))))))))))))))))....	CACUGAAGAAGGAAGGGGAGC&UCUUUCCUUUCUUCUUCUUCG	3	0.999999998318153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN44951_c0_g1_2509_TPlot.pdf
TRINITY_DN44955_c0_g1:1178	si_a70	TRINITY_DN44955_c0_g1	1167	1187	1178	-23.90	-15.90	0.665271966527197	8	2-8,1186-1180;10-18,1178-1170	1-1,1187-1187[UP5];9-9,1179-1179[SIL];19-21,1169-1167[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GAAGAAAAACAAAUUGGAGGU&UCUUUCAAAUUGUUUUUCAUU	3	0.999999999934068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN44955_c0_g1_1178_TPlot.pdf
TRINITY_DN44958_c0_g1:1052	si_a24	TRINITY_DN44958_c0_g1	1042	1061	1052	-24.20	-16.50	0.681818181818182	5.5	2-17,1060-1045;19-20,1044-1043	1-1,1061-1061[UP5];18-18,x-x[BULq];21-21,1042-1042[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	AUC-UGGAACUAAGGAUAAAA&AUUUAUUUUUAGUUCUAAGAC	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN44958_c0_g1_1052_TPlot.pdf
TRINITY_DN4495_c0_g1:1560	si_a645	TRINITY_DN4495_c0_g1	1548	1570	1560	-29.40	-20.60	0.700680272108844	8	1-6,1570-1565;7-12,1563-1558;15-21,1554-1548	x-x,1564-1564[BULt];13-14,1557-1555[AILt]	(((((((...((((((.((((((&))))))-))))))-..)))))))	UUCCCGAGUUUAUUACUUCGAGA&UUUUGA-GUAAUA-UAUCGGGAA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN4495_c0_g1_1560_TPlot.pdf
TRINITY_DN4495_c0_g1:1937	si_s79	TRINITY_DN4495_c0_g1	1921	1946	1937	-26.20	-18.70	0.713740458015267	6.5	1-10,1946-1937;11-14,1935-1932;15-21,1927-1921	x-x,1936-1936[BULt];x-x,1931-1928[BULt]	(((((((....((((.((((((((((&))))))))))-))))----)))))))	AAGAAGAAAAAGAGGUAAAGAAAAAA&UUUUUUCUUU-CCUU----UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4495_c0_g1_1937_TPlot.pdf
TRINITY_DN4495_c0_g1:1938	si_s78	TRINITY_DN4495_c0_g1	1922	1947	1938	-26.20	-18.00	0.687022900763359	7.5	2-11,1946-1937;12-15,1935-1932;16-21,1927-1922	1-1,1947-1947[UP5];x-x,1936-1936[BULt];x-x,1931-1928[BULt]	((((((....((((.((((((((((.&.))))))))))-))))----))))))	AGAAGAAAAAGAGGUAAAGAAAAAAG&UUUUUUUCUUU-CCUU----UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4495_c0_g1_1938_TPlot.pdf
TRINITY_DN4495_c0_g1:1939	si_s77	TRINITY_DN4495_c0_g1	1923	1948	1939	-25.50	-18.20	0.713725490196078	7.5	1-12,1948-1937;13-16,1935-1932;17-21,1927-1923	x-x,1936-1936[BULt];x-x,1931-1928[BULt]	(((((....((((.((((((((((((&))))))))))))-))))----)))))	GAAGAAAAAGAGGUAAAGAAAAAAGA&UUUUUUUUCUUU-CCUU----UCUUC	2	0.999999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4495_c0_g1_1939_TPlot.pdf
TRINITY_DN4495_c0_g1:1940	si_s76	TRINITY_DN4495_c0_g1	1924	1949	1940	-23.60	-16.30	0.690677966101695	6.5	1-13,1949-1937;14-17,1935-1932;18-21,1927-1924	x-x,1936-1936[BULt];x-x,1931-1928[BULt]	((((....((((.(((((((((((((&)))))))))))))-))))----))))	AAGAAAAAGAGGUAAAGAAAAAAGAU&AUUUUUUUUCUUU-CCUU----UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4495_c0_g1_1940_TPlot.pdf
TRINITY_DN4495_c0_g1:1941	si_s75	TRINITY_DN4495_c0_g1	1929	1950	1941	-24.00	-16.60	0.691666666666667	5	1-14,1950-1937;15-19,1935-1931	x-x,1936-1936[BULt];20-21,1930-1929[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AAAGAGGUAAAGAAAAAAGAUG&UAUUUUUUUUCUUU-CCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4495_c0_g1_1941_TPlot.pdf
TRINITY_DN4495_c0_g1:1942	si_s74	TRINITY_DN4495_c0_g1	1930	1951	1942	-25.00	-17.30	0.692	5.5	2-15,1950-1937;16-20,1935-1931	1-1,1951-1951[UP5];x-x,1936-1936[BULt];21-21,1930-1930[UP3]	.(((((.((((((((((((((.&.))))))))))))))-))))).	AAGAGGUAAAGAAAAAAGAUGA&CUAUUUUUUUUCUUU-CCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4495_c0_g1_1942_TPlot.pdf
TRINITY_DN4495_c0_g1:1943	si_s73	TRINITY_DN4495_c0_g1	1931	1952	1943	-24.00	-17.30	0.720833333333333	6.5	3-16,1950-1937;17-21,1935-1931	1-2,1952-1951[UP5];x-x,1936-1936[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AGAGGUAAAGAAAAAAGAUGAA&UCUAUUUUUUUUCUUU-CCUUU	3	0.99999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4495_c0_g1_1943_TPlot.pdf
TRINITY_DN4495_c0_g1:1944	si_s72	TRINITY_DN4495_c0_g1	1932	1952	1944	-24.10	-16.90	0.701244813278008	4.5	1-3,1952-1950;5-17,1949-1937;18-21,1935-1932	4-4,x-x[BULq];x-x,1936-1936[BULt]	((((.(((((((((((((-(((&))).)))))))))))))-))))	GAGGUAAAGAAAAAAGAU-GAA&UUCUAUUUUUUUUCUUU-CCUU	2	0.999999999995708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4495_c0_g1_1944_TPlot.pdf
TRINITY_DN4495_c0_g1:1945	si_s71	TRINITY_DN4495_c0_g1	1933	1959	1945	-25.70	-17.10	0.665369649805448	13	1-5,1959-1955;6-18,1949-1937;19-21,1935-1933	x-x,1954-1950[BULt];x-x,1936-1936[BULt]	(((.(((((((((((((.....(((((&)))))-----)))))))))))))-)))	AGGUAAAGAAAAAAGAUGAAAAGGAAG&CUUCU-----AUUUUUUUUCUUU-CCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4495_c0_g1_1945_TPlot.pdf
TRINITY_DN4495_c0_g1:1946	si_s70	TRINITY_DN4495_c0_g1	1934	1960	1946	-25.80	-17.60	0.682170542635659	13	1-6,1960-1955;7-19,1949-1937;20-21,1935-1934	x-x,1954-1950[BULt];x-x,1936-1936[BULt]	((.(((((((((((((.....((((((&))))))-----)))))))))))))-))	GGUAAAGAAAAAAGAUGAAAAGGAAGU&ACUUCU-----AUUUUUUUUCUUU-CC	2	0.999999999936874	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4495_c0_g1_1946_TPlot.pdf
TRINITY_DN4495_c1_g1:116	si_s93	TRINITY_DN4495_c1_g1	105	124	116	-34.80	-23.20	0.666666666666667	5.5	1-7,124-118;9-18,117-108	8-8,x-x[BULq];19-21,107-105[UP3]	...((((((((((-(((((((&))))))).))))))))))...	CAACUGAAGCGAA-AAGAAGA&UCUUCUUCUUCGCUUCGGAUU	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4495_c1_g1_116_TPlot.pdf
TRINITY_DN4495_c1_g1:117	si_s92	TRINITY_DN4495_c1_g1	106	125	117	-34.90	-24.10	0.69054441260745	4.5	1-8,125-118;10-19,117-108	9-9,x-x[BULq];20-21,107-106[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	AACUGAAGCGAA-AAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	3	0.999999778889403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4495_c1_g1_117_TPlot.pdf
TRINITY_DN4495_c1_g1:118	si_s91	TRINITY_DN4495_c1_g1	107	126	118	-34.70	-25.00	0.720461095100865	3.5	1-9,126-118;11-20,117-108	10-10,x-x[BULq];21-21,107-107[UP3]	.((((((((((-(((((((((&))))))))).)))))))))).	ACUGAAGCGAA-AAGAAGAAA&UUUCUUCUUCUUCGCUUCGGA	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4495_c1_g1_118_TPlot.pdf
TRINITY_DN4495_c1_g1:1298	si_a472	TRINITY_DN4495_c1_g1	1287	1306	1298	-21.50	-14.50	0.674418604651163	9	4-7,1303-1300;9-21,1299-1287	1-3,1306-1304[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	UAUGUAACGAUGA-UACAAUG&AUAUGUAAUUAUUGUUAUAUA	4	0.999980346173202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN4495_c1_g1_1298_TPlot.pdf
TRINITY_DN4495_c1_g1:1880	si_a112	TRINITY_DN4495_c1_g1	1869	1889	1880	-26.20	-17.60	0.67175572519084	14.5	8-21,1882-1869	1-7,1889-1883[UP5]	((((((((((((((.......&.......))))))))))))))	GUAAAACAAGUUCGCUACAAG&UAAAAUACGAGCUUGUUUUAU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN4495_c1_g1_1880_TPlot.pdf
TRINITY_DN4495_c1_g1:50	si_s82	TRINITY_DN4495_c1_g1	39	60	50	-28.90	-20.70	0.716262975778547	5	1-7,60-54;9-21,51-39	8-8,53-52[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	AAGAAGAAGGAAGAAAAAGAAA&UUUCUUU-CCUUUCUUCUUCUU	2	0.999999999630374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4495_c1_g1_50_TPlot.pdf
TRINITY_DN4495_c1_g1:51	si_s81	TRINITY_DN4495_c1_g1	40	61	51	-28.90	-20.20	0.698961937716263	5.5	2-8,60-54;10-21,51-40	1-1,61-61[UP5];9-9,53-52[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	AGAAGAAGGAAGAAAAAGAAAU&UUUUCUUU-CCUUUCUUCUUCU	2	0.999999999998999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4495_c1_g1_51_TPlot.pdf
TRINITY_DN4495_c1_g1:73	si_s80	TRINITY_DN4495_c1_g1	62	82	73	-28.20	-20.00	0.709219858156028	5	1-9,82-74;11-20,72-63	10-10,73-73[SIL];21-21,62-62[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AAAGAAGAAAGAAGAGAAAGA&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999988669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4495_c1_g1_73_TPlot.pdf
TRINITY_DN4495_c1_g1:74	si_s79	TRINITY_DN4495_c1_g1	63	83	74	-26.20	-20.40	0.778625954198473	4.5	1-10,83-74;12-21,72-63	11-11,73-73[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AAGAAGAAAGAAGAGAAAGAG&UUUUUUCUUUCCUUUCUUCUU	2	0.999953187730242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4495_c1_g1_74_TPlot.pdf
TRINITY_DN4495_c1_g1:75	si_s78	TRINITY_DN4495_c1_g1	64	84	75	-26.20	-20.00	0.763358778625954	5.5	1-11,84-74;13-21,72-64	12-12,73-73[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AGAAGAAAGAAGAGAAAGAGG&UUUUUUUCUUUCCUUUCUUCU	2	0.999996817149449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4495_c1_g1_75_TPlot.pdf
TRINITY_DN4495_c1_g1:76	si_s77	TRINITY_DN4495_c1_g1	65	85	76	-25.50	-18.80	0.737254901960784	6	2-12,84-74;14-21,72-65	1-1,85-85[UP5];13-13,73-73[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	GAAGAAAGAAGAGAAAGAGGC&UUUUUUUUCUUUCCUUUCUUC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4495_c1_g1_76_TPlot.pdf
TRINITY_DN4495_c1_g1:77	si_s76	TRINITY_DN4495_c1_g1	66	86	77	-23.60	-15.60	0.661016949152542	8	3-13,84-74;15-21,72-66	1-2,86-85[UP5];14-14,73-73[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAGAAAGAAGAGAAAGAGGCU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4495_c1_g1_77_TPlot.pdf
TRINITY_DN4495_c1_g1:79	si_s69	TRINITY_DN4495_c1_g1	68	86	79	-23.40	-15.70	0.670940170940171	9.5	3-7,84-80;10-21,79-68	1-2,86-85[UP5];8-9,x-x[BULq]	((((((((((((--(((((..&..)))))..))))))))))))	GAAAGAAGAGAA--AGAGGCU&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4495_c1_g1_79_TPlot.pdf
TRINITY_DN4495_c1_g3:22	si_a763	TRINITY_DN4495_c1_g3	11	34	22	-28.80	-19.70	0.684027777777778	10.5	1-9,34-26;10-17,22-15;20-20,12-12	x-x,25-23[BULt];18-19,14-13[SIL];21-21,11-11[UP3]	.(..((((((((...(((((((((&)))))))))---))))))))..).	AGUUUCGAUCAAAGUAAACCCAGA&UUUGGGUUU---UUGAUUGAUUCA	4	0.999994646216814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN4495_c1_g3_22_TPlot.pdf
TRINITY_DN44962_c0_g1:456	si_s91	TRINITY_DN44962_c0_g1	444	465	456	-34.70	-23.30	0.671469740634006	8.5	3-14,463-452;15-19,450-446	1-2,465-464[UP5];x-x,451-451[BULt];20-21,445-444[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	CGUGAAGACGAAGAGGAGGAUC&UUUCUUCUUCUUCG-CUUCGGA	4	0.999999999998731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN44962_c0_g1_456_TPlot.pdf
TRINITY_DN44962_c0_g1:653	si_s182	TRINITY_DN44962_c0_g1	643	662	653	-32.60	-22.80	0.699386503067485	7	1-7,662-656;9-14,654-649;16-19,648-645	8-8,655-655[SIL];15-15,x-x[BULq];20-21,644-643[UP3]	..((((-((((((.(((((((&))))))).)))))).))))..	ACGUGA-CGUUGCGCGGGCAU&AUGCCCGAGUAACGAUUAUUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN44962_c0_g1_653_TPlot.pdf
TRINITY_DN44962_c0_g1:655	si_s180	TRINITY_DN44962_c0_g1	645	664	655	-35.30	-26.60	0.753541076487252	6	2-9,663-656;11-16,654-649;18-21,648-645	1-1,664-664[UP5];10-10,655-655[SIL];17-17,x-x[BULq]	((((-((((((.((((((((.&.)))))))).)))))).))))	GUGA-CGUUGCGCGGGCAUCG&AGAUGCCCGAGUAACGAUUAU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s180_TRINITY_DN44962_c0_g1_655_TPlot.pdf
TRINITY_DN44962_c0_g1:663	si_s215	TRINITY_DN44962_c0_g1	651	672	663	-37.40	-24.90	0.665775401069519	12	1-2,672-671;4-11,669-662;14-21,658-651	3-3,670-670[SIL];12-13,661-659[AILt]	((((((((...((((((((.((&)).))))))))-..))))))))	UUGCGCGGGCAUCGGGCGCUGC&GUUGUGUUCGA-AACCGCGUGA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN44962_c0_g1_663_TPlot.pdf
TRINITY_DN44963_c0_g1:147	si_a406	TRINITY_DN44963_c0_g1	136	156	147	-19.80	-15.70	0.792929292929293	8.5	1-8,156-149;10-19,147-138	9-9,148-148[SIL];20-21,137-136[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	GAUAAAUGUGAAGGAGGCAAU&AUUGUUUUGUUUAUAUUUAAA	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN44963_c0_g1_147_TPlot.pdf
TRINITY_DN44963_c0_g1:282	si_s86	TRINITY_DN44963_c0_g1	267	292	282	-32.90	-22.28	0.677203647416413	9.5	1-8,292-285;9-15,283-277;17-21,271-267	x-x,284-284[BULt];16-16,276-272[AILt]	(((((.....(((((((.((((((((&))))))))-)))))))----.)))))	AGCGAUAAAUGAGGAAGAAGAGGAGA&UUUCCUUU-CUUCUUC----UUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN44963_c0_g1_282_TPlot.pdf
TRINITY_DN44963_c0_g1:663	si_s686	TRINITY_DN44963_c0_g1	652	672	663	-28.80	-20.20	0.701388888888889	7	1-5,672-668;7-11,666-662;14-20,659-653	6-6,667-667[SIL];12-13,661-660[SIL];21-21,652-652[UP3]	.(((((((..(((((.(((((&))))).)))))..))))))).	ACGACUAAGCAAGCUGAUGUU&AACAUGAGUUUAAUUAGUCGA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s686_TRINITY_DN44963_c0_g1_663_TPlot.pdf
TRINITY_DN44964_c0_g1:49	si_a763	TRINITY_DN44964_c0_g1	38	58	49	-28.80	-19.88	0.690277777777778	4.5	1-14,58-45;18-20,41-39	15-17,44-42[SIL];21-21,38-38[UP3]	.(((...((((((((((((((&))))))))))))))...))).	AGAAAAUGUCAAAAACCCAAA&UUUGGGUUUUUGAUUGAUUCA	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN44964_c0_g1_49_TPlot.pdf
TRINITY_DN4496_c0_g2:1417	si_a134	TRINITY_DN4496_c0_g2	1406	1436	1417	-28.20	-18.40	0.652482269503546	24.5	1-9,1436-1428;10-14,1417-1413;16-21,1411-1406	x-x,1427-1418[BULt];15-15,1412-1412[SIL]	((((((.(((((..........(((((((((&)))))))))----------))))).))))))	GCAACGUUUGAUGAAGUACAUUUGCUGUUGC&GCAAUAGUA----------AUUAAUCGUUGU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN4496_c0_g2_1417_TPlot.pdf
TRINITY_DN4496_c0_g2:1620	si_s895	TRINITY_DN4496_c0_g2	1609	1629	1620	-31.10	-21.10	0.678456591639871	9.5	5-20,1625-1610	1-4,1629-1626[UP5];21-21,1609-1609[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAGUUGAAGAGAAAGUACAG&AUAGGCUUUCUCUUCAAUUUC	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4496_c0_g2_1620_TPlot.pdf
TRINITY_DN4496_c1_g1:942	si_a71	TRINITY_DN4496_c1_g1	932	951	942	-23.30	-15.20	0.652360515021459	6	1-14,951-938;17-20,936-933	15-16,937-937[AILq];21-21,932-932[UP3]	.((((.-((((((((((((((&))))))))))))))..)))).	AAAUGU-AAAUAAUUUGGGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4496_c1_g1_942_TPlot.pdf
TRINITY_DN44971_c0_g1:800	si_a374	TRINITY_DN44971_c0_g1	790	809	800	-25.60	-16.80	0.65625	9	1-11,809-799;13-17,798-794	12-12,x-x[BULq];18-21,793-790[UP3]	....(((((-(((((((((((&))))))))))).)))))....	UUCACGAGG-CGUUUUUGGUC&GAUCAAAAAUGAUUUCGAAUU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN44971_c0_g1_800_TPlot.pdf
TRINITY_DN44983_c0_g1:656	si_s376	TRINITY_DN44983_c0_g1	645	666	656	-42.50	-28.40	0.668235294117647	12.5	4-7,663-660;9-18,657-648	1-3,666-664[UP5];8-8,659-658[AILt];19-21,647-645[UP3]	...((((((((((..((((...&...))))-.))))))))))...	UGUGGCGGGCACGGGGAGCUGG&AUCGCUC-GCGUGUCCGCCUUA	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN44983_c0_g1_656_TPlot.pdf
TRINITY_DN44984_c0_g1:1097	si_a191	TRINITY_DN44984_c0_g1	1083	1106	1097	-32.00	-22.70	0.709375	11	1-10,1106-1097;11-17,1093-1087	x-x,1096-1094[BULt];18-21,1086-1083[UP3]	....(((((((...((((((((((&))))))))))---)))))))....	CUGGAGUGAACACAAGGGGAAGAU&AUCUUUCCCU---GUUCACUAAUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN44984_c0_g1_1097_TPlot.pdf
TRINITY_DN44984_c0_g1:1101	si_a187	TRINITY_DN44984_c0_g1	1087	1110	1101	-32.00	-22.30	0.696875	11	5-14,1106-1097;15-21,1093-1087	1-4,1110-1107[UP5];x-x,1096-1094[BULt]	(((((((...((((((((((....&....))))))))))---)))))))	AGUGAACACAAGGGGAAGAUUUCU&UAAUAUCUUUCCCU---GUUCACU	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN44984_c0_g1_1101_TPlot.pdf
TRINITY_DN44984_c0_g1:566	si_a789	TRINITY_DN44984_c0_g1	554	575	566	-24.80	-18.20	0.733870967741935	6.5	1-5,575-571;7-14,569-562;15-21,560-554	6-6,570-570[SIL];x-x,561-561[BULt]	(((((((.((((((((.(((((&))))).))))))))-)))))))	AUUGGAAUGAUGGAAGCGUAGA&UCUAUUUUUCUAUU-UUCCAAU	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN44984_c0_g1_566_TPlot.pdf
TRINITY_DN44984_c0_g1:567	si_a788	TRINITY_DN44984_c0_g1	555	576	567	-24.80	-17.40	0.701612903225806	7.5	2-6,575-571;8-15,569-562;16-21,560-555	1-1,576-576[UP5];7-7,570-570[SIL];x-x,561-561[BULt]	((((((.((((((((.(((((.&.))))).))))))))-))))))	UUGGAAUGAUGGAAGCGUAGAU&UUCUAUUUUUCUAUU-UUCCAA	4	0.999999034889186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN44984_c0_g1_567_TPlot.pdf
TRINITY_DN44984_c0_g1:896	si_s77	TRINITY_DN44984_c0_g1	882	905	896	-25.50	-17.00	0.666666666666667	13	1-11,905-895;12-18,891-885	x-x,894-892[BULt];19-21,884-882[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	AUUGAAAGGAAUUGAGGAAAGAGA&UUUUUUUUCUU---UCCUUUCUUC	0	0.914732481829342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN44984_c0_g1_896_TPlot.pdf
TRINITY_DN44984_c0_g1:898	si_s76	TRINITY_DN44984_c0_g1	883	907	898	-23.60	-17.80	0.754237288135593	14	1-11,907-897;12-19,892-885	x-x,896-893[BULt];20-21,884-883[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	UUGAAAGGAAUUGAGGAAAGAGAGU&AUUUUUUUUCU----UUCCUUUCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN44984_c0_g1_898_TPlot.pdf
TRINITY_DN44984_c0_g1:899	si_s75	TRINITY_DN44984_c0_g1	884	908	899	-24.00	-18.60	0.775	13.5	1-12,908-897;13-20,892-885	x-x,896-893[BULt];21-21,884-884[UP3]	.((((((((....((((((((((((&))))))))))))----)))))))).	UGAAAGGAAUUGAGGAAAGAGAGUG&UAUUUUUUUUCU----UUCCUUUCU	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN44984_c0_g1_899_TPlot.pdf
TRINITY_DN44984_c0_g1:900	si_s74	TRINITY_DN44984_c0_g1	885	909	900	-25.00	-18.40	0.736	9.5	2-13,908-897;14-21,892-885	1-1,909-909[UP5];x-x,896-893[BULt]	((((((((....((((((((((((.&.))))))))))))----))))))))	GAAAGGAAUUGAGGAAAGAGAGUGU&CUAUUUUUUUUCU----UUCCUUUC	3	0.999999954412122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN44984_c0_g1_900_TPlot.pdf
TRINITY_DN44984_c0_g1:902	si_s895	TRINITY_DN44984_c0_g1	889	911	902	-31.10	-20.90	0.672025723472669	9	1-3,911-909;5-10,907-902;11-21,899-889	4-4,908-908[SIL];x-x,901-900[BULt]	(((((((((((..((((((.(((&))).))))))--)))))))))))	GGAAUUGAGGAAAGAGAGUGUAU&AUAGGCUUUC--UCUUCAAUUUC	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN44984_c0_g1_902_TPlot.pdf
TRINITY_DN44984_c0_g1:903	si_s894	TRINITY_DN44984_c0_g1	890	912	903	-29.10	-19.80	0.680412371134021	9	1-4,912-909;6-11,907-902;12-21,899-890	5-5,908-908[SIL];x-x,901-900[BULt]	((((((((((..((((((.((((&)))).))))))--))))))))))	GAAUUGAGGAAAGAGAGUGUAUU&AAUAGGCUUUC--UCUUCAAUUU	3	0.999994472798421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN44984_c0_g1_903_TPlot.pdf
TRINITY_DN44989_c0_g1:127	si_a406	TRINITY_DN44989_c0_g1	116	136	127	-19.80	-13.30	0.671717171717172	9	2-14,135-123	1-1,136-136[UP5];15-21,122-116[UP3]	.......(((((((((((((.&.))))))))))))).......	UUCUCCGAUAAACAAGACAAG&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN44989_c0_g1_127_TPlot.pdf
TRINITY_DN44_c0_g1:400	si_s444	TRINITY_DN44_c0_g1	389	409	400	-22.80	-15.10	0.662280701754386	7	2-6,408-404;9-21,401-389	1-1,409-409[UP5];7-8,403-402[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	AUUGUUGUUGUGUCAAAUAUC&CAUAUUAUAUAUAACAACAAU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN44_c0_g1_400_TPlot.pdf
TRINITY_DN45006_c0_g1:1403	si_s245	TRINITY_DN45006_c0_g1	1392	1413	1403	-33.20	-23.40	0.704819277108434	13	6-8,1408-1406;9-20,1404-1393	1-5,1413-1409[UP5];x-x,1405-1405[BULt];21-21,1392-1392[UP3]	.((((((((((((.(((.....&.....)))-)))))))))))).	AGUGUCGGGAAAUAGCCAAUAG&CAAUAGGC-AUUUCCCGAUAUA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN45006_c0_g1_1403_TPlot.pdf
TRINITY_DN45006_c0_g1:1455	si_a70	TRINITY_DN45006_c0_g1	1444	1464	1455	-23.90	-16.60	0.694560669456067	8	3-7,1462-1458;9-21,1456-1444	1-2,1464-1463[UP5];8-8,1457-1457[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAUGGAGGACAGUCUGAAAUC&UCUUUCAAAUUGUUUUUCAUU	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN45006_c0_g1_1455_TPlot.pdf
TRINITY_DN45009_c0_g1:1162	si_a74	TRINITY_DN45009_c0_g1	1151	1171	1162	-22.20	-15.40	0.693693693693694	11	6-21,1166-1151	1-5,1171-1167[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAGUAAUGGGAAACAAGACUC&UCAAAUUGUUUUUCAUUAUUA	4	0.999994304191659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN45009_c0_g1_1162_TPlot.pdf
TRINITY_DN45009_c0_g1:387	si_a112	TRINITY_DN45009_c0_g1	376	396	387	-26.20	-17.10	0.652671755725191	16.5	8-20,389-377	1-7,396-390[UP5];21-21,376-376[UP3]	.(((((((((((((.......&.......))))))))))))).	CUAGAGCAGGCUUGGUUAUUA&UAAAAUACGAGCUUGUUUUAU	2	0.999725898499617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN45009_c0_g1_387_TPlot.pdf
TRINITY_DN45012_c0_g1:2519	si_s82	TRINITY_DN45012_c0_g1	2505	2529	2519	-28.90	-20.10	0.695501730103806	10	1-4,2529-2526;5-11,2524-2518;12-21,2514-2505	x-x,2525-2525[BULt];x-x,2517-2515[BULt]	((((((((((...(((((((.((((&))))-)))))))---))))))))))	GGGAAGAAGACUAAAGGAAAUGGAA&UUUC-UUUCCUU---UCUUCUUCUU	2	0.999999999999809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN45012_c0_g1_2519_TPlot.pdf
TRINITY_DN45012_c0_g1:2521	si_s71	TRINITY_DN45012_c0_g1	2504	2530	2521	-25.70	-16.80	0.653696498054475	17.5	2-10,2529-2521;11-20,2514-2505	1-1,2530-2530[UP5];x-x,2520-2515[BULt];21-21,2504-2504[UP3]	.((((((((((......(((((((((.&.)))))))))------)))))))))).	UGGGAAGAAGACUAAAGGAAAUGGAAC&CUUCUAUUUU------UUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN45012_c0_g1_2521_TPlot.pdf
TRINITY_DN45012_c0_g1:3148	si_s74	TRINITY_DN45012_c0_g1	3137	3158	3148	-25.00	-19.60	0.784	7	1-4,3158-3155;5-20,3153-3138	x-x,3154-3154[BULt];21-21,3137-3137[UP3]	.((((((((((((((((.((((&))))-)))))))))))))))).	UGAAGGGAAGAAAAAGAGGUGG&CUAU-UUUUUUUCUUUCCUUUC	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN45012_c0_g1_3148_TPlot.pdf
TRINITY_DN45015_c0_g1:675	si_s642	TRINITY_DN45015_c0_g1	664	685	675	-38.60	-25.10	0.650259067357513	12	1-4,685-682;7-16,678-669	5-6,681-679[AILt];17-21,668-664[UP3]	.....((((((((((...((((&))))-..)))))))))).....	CGUCGAUCGAGGGCGCCCCGCC&GGCG-UUUGCCCUCGAUACAAU	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN45015_c0_g1_675_TPlot.pdf
TRINITY_DN45015_c0_g1:676	si_s641	TRINITY_DN45015_c0_g1	665	686	676	-39.20	-26.50	0.676020408163265	11	1-5,686-682;8-17,678-669	6-7,681-679[AILt];18-21,668-665[UP3]	....((((((((((...(((((&)))))-..))))))))))....	GUCGAUCGAGGGCGCCCCGCCU&AGGCG-UUUGCCCUCGAUACAA	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN45015_c0_g1_676_TPlot.pdf
TRINITY_DN45015_c0_g1:680	si_s637	TRINITY_DN45015_c0_g1	669	690	680	-40.90	-27.10	0.662591687041565	13	4-9,687-682;12-21,678-669	1-3,690-688[UP5];10-11,681-679[AILt]	((((((((((...((((((...&...))))))-..))))))))))	AUCGAGGGCGCCCCGCCUGACU&UCGUAGGCG-UUUGCCCUCGAU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN45015_c0_g1_680_TPlot.pdf
TRINITY_DN45015_c0_g1:843	si_s740	TRINITY_DN45015_c0_g1	829	853	843	-35.20	-26.10	0.741477272727273	8.5	1-6,853-848;8-13,845-840;14-20,836-830	7-7,847-846[AILt];x-x,839-837[BULt];21-21,829-829[UP3]	.(((((((...((((((..((((((&))))))-.))))))---))))))).	CAAGGUCAUCGGUCUAUGACACCCG&CGGGUG-AAUAGAU---UGACCUUA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN45015_c0_g1_843_TPlot.pdf
TRINITY_DN45023_c0_g1:919	si_a636	TRINITY_DN45023_c0_g1	908	928	919	-26.30	-18.60	0.707224334600761	9	1-4,928-925;7-18,922-911	5-6,924-923[SIL];19-21,910-908[UP3]	...((((((((((((..((((&))))..))))))))))))...	AACUACUCAAAGAAAGAGGCA&UGUCGAUUUUUUUGAGUAAUA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN45023_c0_g1_919_TPlot.pdf
TRINITY_DN45023_c0_g1:920	si_a635	TRINITY_DN45023_c0_g1	909	929	920	-26.10	-18.60	0.71264367816092	9	2-5,928-925;8-19,922-911	1-1,929-929[UP5];6-7,924-923[SIL];20-21,910-909[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	ACUACUCAAAGAAAGAGGCAA&AUGUCGAUUUUUUUGAGUAAU	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN45023_c0_g1_920_TPlot.pdf
TRINITY_DN45023_c0_g1:955	si_s445	TRINITY_DN45023_c0_g1	944	964	955	-21.10	-15.80	0.748815165876777	11.5	6-20,959-945	1-5,964-960[UP5];21-21,944-944[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGUUGUUGUUGUAUAUUAUCA&AUAUUAUAUAUAACAACAAUU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN45023_c0_g1_955_TPlot.pdf
TRINITY_DN45025_c0_g1:1295	si_a145	TRINITY_DN45025_c0_g1	1284	1304	1295	-28.10	-18.40	0.654804270462633	10.5	4-16,1301-1289;19-21,1286-1284	1-3,1304-1302[UP5];17-18,1288-1287[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	ACCGGAAAGCAAUGGCGAAGA&UAAUCGUUGUUGUUUUAAGGU	2	0.999833390537834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN45025_c0_g1_1295_TPlot.pdf
TRINITY_DN45026_c0_g1:59	si_a747	TRINITY_DN45026_c0_g1	40	68	59	-41.30	-28.60	0.692493946731235	20	1-11,68-58;12-18,48-42;20-21,41-40	x-x,57-49[BULt];19-19,x-x[BULq]	((-(((((((.........(((((((((((&)))))))))))---------))))))).))	CC-AAGGAGGACCUCCUCAUUUAUGGCCAG&CUGGCCAUGAA---------CCUCCUUUGG	1	0.0107828618208884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN45026_c0_g1_59_TPlot.pdf
TRINITY_DN4503_c0_g1:1375	si_s69	TRINITY_DN4503_c0_g1	1364	1384	1375	-23.40	-19.20	0.82051282051282	6	3-13,1382-1372;16-21,1369-1364	1-2,1384-1383[UP5];14-15,1371-1370[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GAAAGAUUAAAAAUAGGAGGC&AACUUCUAUUUUUUUUCUUUC	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4503_c0_g1_1375_TPlot.pdf
TRINITY_DN4503_c0_g1:1829	si_s439	TRINITY_DN4503_c0_g1	1818	1838	1829	-21.50	-17.10	0.795348837209302	11.5	6-20,1833-1819	1-5,1838-1834[UP5];21-21,1818-1818[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUUAUGUAUGAUAUGGGUAA&AAUUACAUAUUAUAUAUAACA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN4503_c0_g1_1829_TPlot.pdf
TRINITY_DN4503_c0_g1:3017	si_s86	TRINITY_DN4503_c0_g1	3006	3026	3017	-32.90	-22.60	0.68693009118541	5.5	2-16,3025-3011;19-20,3008-3007	1-1,3026-3026[UP5];17-18,3010-3009[SIL];21-21,3006-3006[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	CGUACAGAAGAAGGAAGGAAU&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4503_c0_g1_3017_TPlot.pdf
TRINITY_DN4503_c0_g1:3019	si_s84	TRINITY_DN4503_c0_g1	3008	3028	3019	-32.30	-21.60	0.668730650154799	9	4-18,3025-3011	1-3,3028-3026[UP5];19-21,3010-3008[UP3]	...(((((((((((((((...&...)))))))))))))))...	UACAGAAGAAGGAAGGAAUGU&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4503_c0_g1_3019_TPlot.pdf
TRINITY_DN4504_c0_g1:4476	si_a148	TRINITY_DN4504_c0_g1	4465	4486	4476	-30.30	-20.00	0.66006600660066	11.5	3-8,4484-4479;9-20,4477-4466	1-2,4486-4485[UP5];x-x,4478-4478[BULt];21-21,4465-4465[UP3]	.((((((((((((.((((((..&..))))))-)))))))))))).	CUGACCUUGAGGCAAAUGGCUC&UCGUUGUU-GUUUUAAGGUCAA	2	0.999910579936388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN4504_c0_g1_4476_TPlot.pdf
TRINITY_DN4504_c0_g2:272	si_a613	TRINITY_DN4504_c0_g2	261	281	272	-35.30	-23.10	0.654390934844193	7.5	2-6,280-276;8-18,274-264	1-1,281-281[UP5];7-7,275-275[SIL];19-21,263-261[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	UGUUGUCUGGUCGAGUGGAAG&AUUCCAAUCGACUAGGCGUAU	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN4504_c0_g2_272_TPlot.pdf
TRINITY_DN4504_c0_g2:287	si_a497	TRINITY_DN4504_c0_g2	275	296	287	-32.00	-20.80	0.65	10	1-7,296-290;9-12,288-285;14-19,282-277	8-8,289-289[SIL];13-13,284-283[AILt];20-21,276-275[UP3]	..((((((..((((.(((((((&))))))).))))-.))))))..	GUGGAAGAGAGAGACGCGGCAU&AUGUCGUUUUUC-GUCUUCCUU	2	0.99999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4504_c0_g2_287_TPlot.pdf
TRINITY_DN4504_c0_g2:4222	si_a167	TRINITY_DN4504_c0_g2	4207	4231	4222	-34.00	-22.70	0.667647058823529	7.5	1-10,4231-4222;11-15,4219-4215;16-20,4212-4208	x-x,4221-4220[BULt];x-x,4214-4213[BULt];21-21,4207-4207[UP3]	.(((((..(((((..((((((((((&))))))))))--)))))--))))).	CUCUGGUCACGGGAAUGAAUAGAUU&AAUCUAUUCA--CCCGU--CUAGAU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a167_TRINITY_DN4504_c0_g2_4222_TPlot.pdf
TRINITY_DN45050_c0_g1:739	si_a633	TRINITY_DN45050_c0_g1	729	748	739	-26.40	-18.30	0.693181818181818	4.5	1-17,748-732;19-21,731-729	18-18,x-x[BULq]	(((-(((((((((((((((((&))))))))))))))))).)))	UGC-CAAAGAAAUUGAUAUAG&UUAUGUCGAUUUUUUUGAGUA	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN45050_c0_g1_739_TPlot.pdf
TRINITY_DN45050_c0_g1:740	si_a632	TRINITY_DN45050_c0_g1	730	749	740	-26.10	-18.50	0.708812260536398	5	1-18,749-732;20-21,731-730	19-19,x-x[BULq]	((-((((((((((((((((((&)))))))))))))))))).))	GC-CAAAGAAAUUGAUAUAGU&AUUAUGUCGAUUUUUUUGAGU	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN45050_c0_g1_740_TPlot.pdf
TRINITY_DN45050_c0_g1:741	si_a631	TRINITY_DN45050_c0_g1	730	750	741	-25.70	-18.00	0.700389105058366	6.5	2-19,749-732	1-1,750-750[UP5];20-21,731-730[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GCCAAAGAAAUUGAUAUAGUU&UAUUAUGUCGAUUUUUUUGAG	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN45050_c0_g1_741_TPlot.pdf
TRINITY_DN45050_c0_g1:742	si_a630	TRINITY_DN45050_c0_g1	731	751	742	-25.80	-18.00	0.697674418604651	7.5	3-20,749-732	1-2,751-750[UP5];21-21,731-731[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CCAAAGAAAUUGAUAUAGUUA&GUAUUAUGUCGAUUUUUUUGA	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN45050_c0_g1_742_TPlot.pdf
TRINITY_DN45050_c0_g1:743	si_a629	TRINITY_DN45050_c0_g1	732	752	743	-26.30	-17.20	0.653992395437262	8.5	4-21,749-732	1-3,752-750[UP5]	((((((((((((((((((...&...))))))))))))))))))	CAAAGAAAUUGAUAUAGUUAU&CGUAUUAUGUCGAUUUUUUUG	3	0.999999030805929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN45050_c0_g1_743_TPlot.pdf
TRINITY_DN45050_c0_g1:784	si_a326	TRINITY_DN45050_c0_g1	771	793	784	-26.20	-18.48	0.705343511450382	10.5	1-10,793-784;13-21,779-771	11-12,783-780[AILt]	(((((((((....((((((((((&))))))))))--..)))))))))	GACAGGGAAGUGGGAAAAAUUAU&AUGAUUUUUU--UAUUCCUUGUC	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN45050_c0_g1_784_TPlot.pdf
TRINITY_DN45050_c0_g1:812	si_a67	TRINITY_DN45050_c0_g1	799	821	812	-27.20	-18.38	0.675735294117647	10	1-10,821-812;13-15,807-805;18-21,802-799	11-12,811-808[AILt];16-17,804-803[SIL]	((((..(((....((((((((((&))))))))))--..)))..))))	GAAAUUCAAGUCAUGAAAGAAGC&GCUUCUUUCA--AAUUGUUUUUC	3	0.999999996912973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN45050_c0_g1_812_TPlot.pdf
TRINITY_DN4506_c0_g1:2082	si_a68	TRINITY_DN4506_c0_g1	2071	2091	2082	-25.40	-17.10	0.673228346456693	9	1-4,2091-2088;6-8,2086-2084;11-20,2081-2072	5-5,2087-2087[SIL];9-10,2083-2082[SIL];21-21,2071-2071[UP3]	.((((((((((..(((.((((&)))).)))..)))))))))).	GGAAGGACAAUGAGAAUGAGG&CUUCUUUCAAAUUGUUUUUCA	2	0.999999376663204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4506_c0_g1_2082_TPlot.pdf
TRINITY_DN45071_c0_g1:304	si_a821	TRINITY_DN45071_c0_g1	293	312	304	-26.20	-18.70	0.713740458015267	5	2-8,311-305;11-21,303-293	1-1,312-312[UP5];9-10,304-304[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	UUUUUUCUUUCG-UUCUUCUG&AAGAAGAAAGGAAAGAAAAAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN45071_c0_g1_304_TPlot.pdf
TRINITY_DN45075_c0_g1:240	si_a496	TRINITY_DN45075_c0_g1	228	248	240	-32.40	-21.50	0.66358024691358	8	4-4,245-245;6-19,244-231;20-21,229-228	1-3,248-246[UP5];5-5,x-x[BULq];x-x,230-230[BULt]	((.((((((((((((((-(...&...).))))))))))))))-))	AGCGAAGACGAAAAACG-CUCU&UAUGUCGUUUUUCGUCUUC-CU	2	0.999999860013062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN45075_c0_g1_240_TPlot.pdf
TRINITY_DN45075_c0_g1:398	si_s899	TRINITY_DN45075_c0_g1	387	408	398	-28.30	-18.70	0.660777385159011	9.5	2-9,407-400;10-17,398-391	1-1,408-408[UP5];x-x,399-399[BULt];18-21,390-387[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	AGGAGAGAUUGAUAGAGGAGGA&GCUUUCUCU-UCAAUUUCAAUU	0	0.422661275560107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN45075_c0_g1_398_TPlot.pdf
TRINITY_DN45075_c0_g1:447	si_s73	TRINITY_DN45075_c0_g1	433	456	447	-24.00	-16.22	0.675833333333333	9.5	1-14,456-443;17-21,437-433	15-16,442-438[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	AGAGGCGGCCAGGAAAGAGAUGGA&UCUAUUUUUUUUCU---UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN45075_c0_g1_447_TPlot.pdf
TRINITY_DN45075_c0_g1:448	si_s72	TRINITY_DN45075_c0_g1	437	457	448	-24.10	-17.00	0.705394190871369	7.5	1-15,457-443;18-19,440-439	16-17,442-441[SIL];20-21,438-437[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	GCGGCCAGGAAAGAGAUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999988383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN45075_c0_g1_448_TPlot.pdf
TRINITY_DN4507_c0_g1:543	si_a185	TRINITY_DN4507_c0_g1	530	552	543	-31.70	-21.50	0.678233438485804	3.5	1-13,552-540;15-21,536-530	14-14,539-537[AILt]	(((((((...(((((((((((((&)))))))))))))--.)))))))	UGAACAGACAGAAAGAUAUUAUU&GAUAAUAUCUUUC--CCUGUUCA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN4507_c0_g1_543_TPlot.pdf
TRINITY_DN4507_c0_g1:616	si_s77	TRINITY_DN4507_c0_g1	604	625	616	-25.50	-17.50	0.686274509803922	7	1-5,625-621;7-14,619-612;17-21,608-604	6-6,620-620[SIL];15-16,611-609[AILt]	(((((...((((((((.(((((&))))).))))))))-..)))))	GAAGAUUUGGAAAGAAUGAAGA&UUUUUUUUCUUUCC-UUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4507_c0_g1_616_TPlot.pdf
TRINITY_DN45100_c0_g1:1001	si_s650	TRINITY_DN45100_c0_g1	990	1010	1001	-41.50	-27.70	0.667469879518072	7	1-6,1010-1005;8-11,1003-1000;13-16,998-995;18-21,993-990	7-7,1004-1004[SIL];12-12,999-999[SIL];17-17,994-994[SIL]	((((.((((.((((.((((((&)))))).)))).)))).))))	GUCCGCUGACUGUGGCGAGGG&CCCUCGAUACAAUCGGGGGAU	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s650_TRINITY_DN45100_c0_g1_1001_TPlot.pdf
TRINITY_DN45100_c0_g1:1374	si_s103	TRINITY_DN45100_c0_g1	1355	1383	1374	-34.10	-23.00	0.674486803519062	13	1-13,1383-1371;14-20,1362-1356	x-x,1370-1363[BULt];21-21,1355-1355[UP3]	.(((((((........(((((((((((((&)))))))))))))--------))))))).	GCUAUUUUCAGUCGCACCGAUCUGGGGCG&CGCUUCGGAUUGG--------AAAAUAGA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN45100_c0_g1_1374_TPlot.pdf
TRINITY_DN45100_c0_g1:1376	si_s101	TRINITY_DN45100_c0_g1	1365	1385	1376	-32.50	-22.80	0.701538461538462	10.5	1-15,1385-1371	16-21,1370-1365[UP3]	......(((((((((((((((&)))))))))))))))......	GUCGCACCGAUCUGGGGCGGA&UUCGCUUCGGAUUGGAAAAUA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN45100_c0_g1_1376_TPlot.pdf
TRINITY_DN45100_c0_g1:2004	si_a505	TRINITY_DN45100_c0_g1	1994	2014	2004	-33.30	-22.60	0.678678678678679	8	2-9,2013-2006;10-16,2004-1998;18-20,1997-1995	1-1,2014-2014[UP5];x-x,2005-2005[BULt];17-17,x-x[BULq];21-21,1994-1994[UP3]	.(((-(((((((.((((((((.&.))))))))-))))))).))).	AACA-UCCAGGGAAAGACGGGC&UUUCGUCUU-CCUUGGAAUGUA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN45100_c0_g1_2004_TPlot.pdf
TRINITY_DN45100_c0_g1:2358	si_a761	TRINITY_DN45100_c0_g1	2347	2372	2358	-30.10	-21.60	0.717607973421927	15.5	1-6,2372-2367;8-9,2365-2364;10-21,2358-2347	7-7,2366-2366[SIL];x-x,2363-2359[BULt]	((((((((((((.....((.((((((&)))))).))-----))))))))))))	AGUCAAUCAGAAGAUGGGCGCAGAGG&CCUUUGGGU-----UUUUGAUUGAUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN45100_c0_g1_2358_TPlot.pdf
TRINITY_DN45100_c0_g1:2364	si_a760	TRINITY_DN45100_c0_g1	2348	2373	2364	-31.10	-20.90	0.672025723472669	16	2-7,2372-2367;9-10,2365-2364;11-21,2358-2348	1-1,2373-2373[UP5];8-8,2366-2366[SIL];x-x,2363-2359[BULt]	(((((((((((.....((.((((((.&.)))))).))-----)))))))))))	GUCAAUCAGAAGAUGGGCGCAGAGGU&UCCUUUGGGU-----UUUUGAUUGAU	3	0.999997540575938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN45100_c0_g1_2364_TPlot.pdf
TRINITY_DN45100_c0_g1:2370	si_a786	TRINITY_DN45100_c0_g1	2355	2379	2370	-26.60	-17.70	0.665413533834586	16	1-11,2379-2369;12-20,2364-2356	x-x,2368-2365[BULt];21-21,2355-2355[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AGAAGAUGGGCGCAGAGGUGGAGGA&UCUUCUAUUUU----UCUAUUUUCC	3	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN45100_c0_g1_2370_TPlot.pdf
TRINITY_DN45100_c0_g1:2382	si_a70	TRINITY_DN45100_c0_g1	2371	2391	2382	-23.90	-16.28	0.681171548117155	10.5	1-6,2391-2386;10-21,2382-2371	7-9,2385-2383[SIL]	((((((((((((...((((((&))))))...))))))))))))	GGUGGAGGACGAGGAGGAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999999987771236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN45100_c0_g1_2382_TPlot.pdf
TRINITY_DN45100_c0_g1:2386	si_s89	TRINITY_DN45100_c0_g1	2374	2395	2386	-35.30	-23.70	0.671388101983003	9	4-16,2392-2380;17-20,2378-2375	1-3,2395-2393[UP5];x-x,2379-2379[BULt];21-21,2374-2374[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	GGAGGACGAGGAGGAAGAACCC&CCUUUCUUCUUCUUCG-CUUCG	4	0.999999999999432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN45100_c0_g1_2386_TPlot.pdf
TRINITY_DN45100_c0_g1:260	si_s728	TRINITY_DN45100_c0_g1	249	269	260	-31.90	-21.20	0.664576802507837	9	2-9,268-261;11-18,259-252	1-1,269-269[UP5];10-10,260-260[SIL];19-21,251-249[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	CGACGCCUGUCCAGAUGAUGC&AUAUUAUCUAGACGGGUGAAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN45100_c0_g1_260_TPlot.pdf
TRINITY_DN45100_c0_g1:517	si_s375	TRINITY_DN45100_c0_g1	493	529	517	-44.10	-30.40	0.689342403628118	19.5	1-5,529-525;6-16,521-511;17-21,497-493	x-x,524-522[BULt];x-x,510-498[BULt]	(((((.............(((((((((((...(((((&)))))---)))))))))))-------------)))))	GAGGCUCUUCAGGAUGCUGGACACGCGAGACACGAUC&GAUCG---CUCGCGUGUCC-------------GCCUU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN45100_c0_g1_517_TPlot.pdf
TRINITY_DN45100_c0_g1:518	si_s374	TRINITY_DN45100_c0_g1	503	530	518	-45.60	-30.20	0.662280701754386	11.5	2-6,529-525;7-18,521-510;19-21,505-503	1-1,530-530[UP5];x-x,524-522[BULt];x-x,509-506[BULt]	(((....((((((((((((...(((((.&.)))))---))))))))))))----)))	AGGAUGCUGGACACGCGAGACACGAUCA&CGAUCG---CUCGCGUGUCCG----CCU	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN45100_c0_g1_518_TPlot.pdf
TRINITY_DN45100_c0_g1:521	si_s371	TRINITY_DN45100_c0_g1	510	533	521	-43.20	-29.00	0.671296296296296	13.5	5-9,529-525;10-21,521-510	1-4,533-530[UP5];x-x,524-522[BULt]	((((((((((((...(((((....&....)))))---))))))))))))	UGGACACGCGAGACACGAUCAAGC&AACCGAUCG---CUCGCGUGUCCG	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN45100_c0_g1_521_TPlot.pdf
TRINITY_DN45100_c0_g1:643	si_a341	TRINITY_DN45100_c0_g1	632	652	643	-27.80	-18.40	0.661870503597122	12	1-11,652-642	12-21,641-632[UP3]	..........(((((((((((&)))))))))))..........	UCCUCAGAGAUUCGGGACGAG&CUUGUCCCGAAAAUAUUAAUU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN45100_c0_g1_643_TPlot.pdf
TRINITY_DN45100_c0_g1:763	si_a503	TRINITY_DN45100_c0_g1	748	772	763	-32.10	-21.10	0.657320872274143	13	4-9,769-764;11-14,762-759;15-21,754-748	1-3,772-770[UP5];10-10,763-763[SIL];x-x,758-755[BULt]	(((((((....((((.((((((...&...)))))).))))----)))))))	CGUUCCAUGCUGGGAUGACGAGCCU&UUUUUCGUCUUCCU----UGGAAUG	4	0.999999999187863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN45100_c0_g1_763_TPlot.pdf
TRINITY_DN45100_c0_g1:904	si_a282	TRINITY_DN45100_c0_g1	893	913	904	-30.30	-20.30	0.66996699669967	5.5	1-13,913-901;15-18,899-896	14-14,900-900[SIL];19-21,895-893[UP3]	...((((.(((((((((((((&))))))))))))).))))...	CUCAAUCGAAGCGAUUUUUUU&GAAAAGAUCGCUUGGAUUUAA	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN45100_c0_g1_904_TPlot.pdf
TRINITY_DN4510_c0_g1:475	si_a784	TRINITY_DN4510_c0_g1	460	484	475	-24.70	-16.60	0.672064777327935	13	3-10,482-475;11-21,470-460	1-2,484-483[UP5];x-x,474-471[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	GAAAUGGAAGAGAGUAUAGAAGAAG&ACUCUUCUAU----UUUUCUAUUUU	2	0.999999999742363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4510_c0_g1_475_TPlot.pdf
TRINITY_DN4511_c0_g2:1381	si_s773	TRINITY_DN4511_c0_g2	1370	1390	1381	-23.10	-17.70	0.766233766233766	10.5	5-21,1386-1370	1-4,1390-1387[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUGUGGUAAUGGUGAAUUA&UUAAUUACUAUUGCUAUAAAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN4511_c0_g2_1381_TPlot.pdf
TRINITY_DN45121_c0_g1:151	si_s899	TRINITY_DN45121_c0_g1	140	160	151	-28.30	-19.10	0.674911660777385	9.5	1-5,160-156;8-17,153-144	6-7,155-154[SIL];18-21,143-140[UP3]	....((((((((((..(((((&)))))..))))))))))....	CGCAGAAGUUGAAGUAGAAGC&GCUUUCUCUUCAAUUUCAAUU	2	0.999936101297008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN45121_c0_g1_151_TPlot.pdf
TRINITY_DN4512_c0_g1:1400	si_s872	TRINITY_DN4512_c0_g1	1389	1410	1400	-30.70	-20.10	0.654723127035831	10	2-8,1409-1403;9-14,1401-1396	1-1,1410-1410[UP5];x-x,1402-1402[BULt];15-21,1395-1389[UP3]	.......((((((.(((((((.&.)))))))-)))))).......	CUGUGACGUUCUACAGACCGGA&ACCGGUCU-UAGAACUAAAAAU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN4512_c0_g1_1400_TPlot.pdf
TRINITY_DN4512_c0_g1:1448	si_s431	TRINITY_DN4512_c0_g1	1438	1457	1448	-21.10	-15.10	0.71563981042654	6.5	2-11,1456-1447;13-19,1446-1440	1-1,1457-1457[UP5];12-12,x-x[BULq];20-21,1439-1438[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	UAGAUAUGU-GUUAUUGUUAG&AUAACAAUAAUUACAUAUUAU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN4512_c0_g1_1448_TPlot.pdf
TRINITY_DN4512_c0_g1:304	si_a406	TRINITY_DN4512_c0_g1	293	313	304	-19.80	-14.10	0.712121212121212	9	1-13,313-301;16-18,298-296	14-15,300-299[SIL];19-21,295-293[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	CUCAAAGUUGAACAGGACAGU&AUUGUUUUGUUUAUAUUUAAA	4	0.999999997254913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4512_c0_g1_304_TPlot.pdf
TRINITY_DN4512_c0_g1:305	si_a405	TRINITY_DN4512_c0_g1	294	314	305	-19.80	-14.40	0.727272727272727	8.5	2-14,313-301;17-19,298-296	1-1,314-314[UP5];15-16,300-299[SIL];20-21,295-294[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	UCAAAGUUGAACAGGACAGUG&AAUUGUUUUGUUUAUAUUUAA	3	0.999999984089789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4512_c0_g1_305_TPlot.pdf
TRINITY_DN45143_c0_g1:1083	si_s111	TRINITY_DN45143_c0_g1	1072	1092	1083	-24.80	-18.88	0.761290322580645	7	2-7,1091-1086;11-21,1082-1072	1-1,1092-1092[UP5];8-10,1085-1083[SIL]	(((((((((((...((((((.&.))))))...)))))))))))	UCUAUUUUUCUUUGUUCCAAA&AUUGGAAAAUAGAAAAAUAGA	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN45143_c0_g1_1083_TPlot.pdf
TRINITY_DN45143_c0_g1:405	si_s75	TRINITY_DN45143_c0_g1	394	414	405	-24.00	-16.20	0.675	11	4-16,411-399;18-20,397-395	1-3,414-412[UP5];17-17,398-398[SIL];21-21,394-394[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	UGAAUGGAAGGAAAGAGGUAC&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN45143_c0_g1_405_TPlot.pdf
TRINITY_DN45143_c0_g1:406	si_s78	TRINITY_DN45143_c0_g1	394	415	406	-26.20	-17.70	0.675572519083969	11.5	5-17,411-399;18-20,397-395	1-4,415-412[UP5];x-x,398-398[BULt];21-21,394-394[UP3]	.(((.(((((((((((((....&....)))))))))))))-))).	UGAAUGGAAGGAAAGAGGUACA&UUUUUUUCUUUCCUUUC-UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN45143_c0_g1_406_TPlot.pdf
TRINITY_DN45143_c0_g1:410	si_s69	TRINITY_DN45143_c0_g1	399	421	410	-23.40	-15.80	0.675213675213675	12	3-7,419-415;8-21,412-399	1-2,421-420[UP5];x-x,414-413[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	GGAAGGAAAGAGGUACAGGAGAA&AACUUCU--AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN45143_c0_g1_410_TPlot.pdf
TRINITY_DN4514_c0_g1:1802	si_s77	TRINITY_DN4514_c0_g1	1789	1811	1802	-25.50	-17.30	0.67843137254902	5.5	1-11,1811-1801;13-16,1799-1796;17-21,1793-1789	12-12,1800-1800[SIL];x-x,1795-1794[BULt]	(((((..((((.(((((((((((&))))))))))).))))--)))))	GAAGAUCAAGGUAGGAAAAAAAG&UUUUUUUUCUUUCCUU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4514_c0_g1_1802_TPlot.pdf
TRINITY_DN4514_c0_g1:1804	si_s75	TRINITY_DN4514_c0_g1	1791	1813	1804	-24.00	-16.00	0.666666666666667	5	1-13,1813-1801;15-18,1799-1796;19-21,1793-1791	14-14,1800-1800[SIL];x-x,1795-1794[BULt]	(((..((((.(((((((((((((&))))))))))))).))))--)))	AGAUCAAGGUAGGAAAAAAAGUA&UAUUUUUUUUCUUUCCUU--UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4514_c0_g1_1804_TPlot.pdf
TRINITY_DN4514_c0_g1:3842	si_s74	TRINITY_DN4514_c0_g1	3831	3851	3842	-25.00	-17.50	0.7	6	1-6,3851-3846;8-17,3844-3835	7-7,3845-3845[SIL];18-21,3834-3831[UP3]	....((((((((((.((((((&)))))).))))))))))....	GUGCGGAAAGAAAACAAAUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4514_c0_g1_3842_TPlot.pdf
TRINITY_DN4514_c0_g1:3845	si_s71	TRINITY_DN4514_c0_g1	3834	3854	3845	-25.70	-19.00	0.739299610894942	6	3-9,3852-3846;11-20,3844-3835	1-2,3854-3853[UP5];10-10,3845-3845[SIL];21-21,3834-3834[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CGGAAAGAAAACAAAUAGACA&CUUCUAUUUUUUUUCUUUCCU	3	0.999999907410385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4514_c0_g1_3845_TPlot.pdf
TRINITY_DN4514_c0_g1:3994	si_a505	TRINITY_DN4514_c0_g1	3983	4003	3994	-33.30	-21.70	0.651651651651652	5	2-5,4002-3999;7-9,3997-3995;11-21,3993-3983	1-1,4003-4003[UP5];6-6,3998-3998[SIL];10-10,3994-3994[SIL]	(((((((((((.(((.((((.&.)))).))).)))))))))))	UACAUUCCAAGUAAGCCGAAU&UUUCGUCUUCCUUGGAAUGUA	4	0.999999262038053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN4514_c0_g1_3994_TPlot.pdf
TRINITY_DN4514_c1_g1:1041	si_s798	TRINITY_DN4514_c1_g1	1030	1050	1041	-29.30	-19.18	0.654607508532423	7	1-3,1050-1048;7-18,1044-1033;20-21,1031-1030	4-6,1047-1045[SIL];19-19,1032-1032[SIL]	((.((((((((((((...(((&)))...)))))))))))).))	GUCACGAAGAUAAAAGUGGAG&CUCGUAUUUUAUCUUCGUUAC	2	0.999024445860172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4514_c1_g1_1041_TPlot.pdf
TRINITY_DN4514_c1_g1:1149	si_a775	TRINITY_DN4514_c1_g1	1138	1157	1149	-27.20	-18.00	0.661764705882353	8.5	2-6,1156-1152;8-17,1151-1142	1-1,1157-1157[UP5];7-7,x-x[BULq];18-21,1141-1138[UP3]	....((((((((((-(((((.&.))))).))))))))))....	GUAGAGGAGAGUUG-GUCAAA&AUUGAUUCAACUCUUCUAUUU	2	0.996613268617216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN4514_c1_g1_1149_TPlot.pdf
TRINITY_DN4514_c1_g1:1205	si_a789	TRINITY_DN4514_c1_g1	1195	1214	1205	-24.80	-18.10	0.729838709677419	5.5	1-11,1214-1204;13-18,1203-1198	12-12,x-x[BULq];19-21,1197-1195[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CUCGGAGAA-AGAAAAAUAGA&UCUAUUUUUCUAUUUUCCAAU	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4514_c1_g1_1205_TPlot.pdf
TRINITY_DN4514_c1_g1:1206	si_a788	TRINITY_DN4514_c1_g1	1196	1215	1206	-24.80	-18.30	0.737903225806452	4.5	2-12,1214-1204;14-19,1203-1198	1-1,1215-1215[UP5];13-13,x-x[BULq];20-21,1197-1196[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UCGGAGAA-AGAAAAAUAGAU&UUCUAUUUUUCUAUUUUCCAA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4514_c1_g1_1206_TPlot.pdf
TRINITY_DN4514_c1_g1:1207	si_a787	TRINITY_DN4514_c1_g1	1197	1216	1207	-26.30	-18.30	0.695817490494297	5.5	3-13,1214-1204;15-20,1203-1198	1-2,1216-1215[UP5];14-14,x-x[BULq];21-21,1197-1197[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CGGAGAA-AGAAAAAUAGAUA&CUUCUAUUUUUCUAUUUUCCA	4	0.999999983461381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4514_c1_g1_1207_TPlot.pdf
TRINITY_DN4514_c1_g1:2299	si_a469	TRINITY_DN4514_c1_g1	2288	2309	2299	-21.10	-14.10	0.66824644549763	7.5	2-8,2308-2302;9-19,2300-2290	1-1,2309-2309[UP5];x-x,2301-2301[BULt];20-21,2289-2288[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	AAGACAAUAAUUAGUAUGUUAG&AUAAUAUG-UAAUUAUUGUUAU	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN4514_c1_g1_2299_TPlot.pdf
TRINITY_DN4514_c1_g1:3444	si_a680	TRINITY_DN4514_c1_g1	3433	3453	3444	-34.70	-22.90	0.659942363112392	9	1-6,3453-3448;9-11,3445-3443;13-17,3441-3437;19-21,3435-3433	7-8,3447-3446[SIL];12-12,3442-3442[SIL];18-18,3436-3436[SIL]	(((.(((((.(((..((((((&))))))..))).))))).)))	GUUGGAAACGGCGGAGAUGAG&CUUAUUCACGCGGUUUCGAAC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a680_TRINITY_DN4514_c1_g1_3444_TPlot.pdf
TRINITY_DN4514_c1_g1:3446	si_a678	TRINITY_DN4514_c1_g1	3435	3455	3446	-36.30	-23.60	0.650137741046832	8	1-8,3455-3448;11-13,3445-3443;15-19,3441-3437;21-21,3435-3435	9-10,3447-3446[SIL];14-14,3442-3442[SIL];20-20,3436-3436[SIL]	(.(((((.(((..((((((((&))))))))..))).))))).)	UGGAAACGGCGGAGAUGAGGA&UCCUUAUUCACGCGGUUUCGA	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN4514_c1_g1_3446_TPlot.pdf
TRINITY_DN4514_c1_g1:3449	si_a556	TRINITY_DN4514_c1_g1	3437	3458	3449	-33.40	-22.90	0.68562874251497	11	4-14,3455-3445;15-18,3443-3440	1-3,3458-3456[UP5];x-x,3444-3444[BULt];19-21,3439-3437[UP3]	...((((.(((((((((((...&...)))))))))))-))))...	GAAACGGCGGAGAUGAGGAUAU&AUUUCUUUAUCUCC-CCGUGAA	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN4514_c1_g1_3449_TPlot.pdf
TRINITY_DN4514_c1_g1:3489	si_s368	TRINITY_DN4514_c1_g1	3477	3498	3489	-40.10	-26.90	0.670822942643391	12	6-11,3493-3488;13-15,3486-3484;16-21,3482-3477	1-5,3498-3494[UP5];12-12,3487-3487[SIL];x-x,3483-3483[BULt]	((((((.(((.((((((.....&.....)))))).)))-))))))	ACACGCUGAGGGAUCGGGUACG&UUGAACCGAUCGCUC-GCGUGU	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN4514_c1_g1_3489_TPlot.pdf
TRINITY_DN4514_c1_g1:3522	si_s72	TRINITY_DN4514_c1_g1	3511	3532	3522	-24.10	-16.18	0.671369294605809	15	1-6,3532-3527;12-21,3520-3511	7-11,3526-3521[AILt]	((((((((((......((((((&))))))-.....))))))))))	AAGGAGAGAAUGCAAUGUGGAG&UUCUAU-UUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4514_c1_g1_3522_TPlot.pdf
TRINITY_DN4514_c1_g1:3524	si_s70	TRINITY_DN4514_c1_g1	3513	3534	3524	-25.80	-17.28	0.669767441860465	15.5	2-8,3533-3527;14-21,3520-3513	1-1,3534-3534[UP5];9-13,3526-3521[AILt]	((((((((......(((((((.&.)))))))-.....))))))))	GGAGAGAAUGCAAUGUGGAGGA&ACUUCUAU-UUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4514_c1_g1_3524_TPlot.pdf
TRINITY_DN4514_c1_g1:3604	si_a788	TRINITY_DN4514_c1_g1	3593	3614	3604	-24.80	-16.80	0.67741935483871	9	1-4,3614-3611;5-7,3609-3607;9-19,3605-3595	x-x,3610-3610[BULt];8-8,3606-3606[SIL];20-21,3594-3593[UP3]	..(((((((((((.(((.((((&))))-))).)))))))))))..	ACGGAGAGUAGAGUAGUCAGAA&UUCU-AUUUUUCUAUUUUCCAA	4	0.999999999959288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4514_c1_g1_3604_TPlot.pdf
TRINITY_DN4514_c1_g1:3644	si_s74	TRINITY_DN4514_c1_g1	3633	3653	3644	-25.00	-17.20	0.688	8.5	1-4,3653-3650;6-17,3648-3637	5-5,3649-3649[SIL];18-21,3636-3633[UP3]	....((((((((((((.((((&)))).))))))))))))....	CACUGGGAAGAAGAAGUAUAG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4514_c1_g1_3644_TPlot.pdf
TRINITY_DN4514_c1_g2:1661	si_s798	TRINITY_DN4514_c1_g2	1650	1670	1661	-29.30	-19.18	0.654607508532423	7	1-3,1670-1668;7-18,1664-1653;20-21,1651-1650	4-6,1667-1665[SIL];19-19,1652-1652[SIL]	((.((((((((((((...(((&)))...)))))))))))).))	GUCACGAAGAUAAAAGUGGAG&CUCGUAUUUUAUCUUCGUUAC	2	0.999012228093801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4514_c1_g2_1661_TPlot.pdf
TRINITY_DN4514_c1_g2:1768	si_a776	TRINITY_DN4514_c1_g2	1757	1776	1768	-27.10	-18.00	0.664206642066421	8.5	1-5,1776-1772;7-16,1771-1762	6-6,x-x[BULq];17-21,1761-1757[UP3]	.....((((((((((-(((((&))))).)))))))))).....	GGUAGAGGAGAGUUG-GUCAA&UUGAUUCAACUCUUCUAUUUU	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN4514_c1_g2_1768_TPlot.pdf
TRINITY_DN4514_c1_g2:1769	si_a775	TRINITY_DN4514_c1_g2	1758	1777	1769	-27.20	-18.00	0.661764705882353	8.5	2-6,1776-1772;8-17,1771-1762	1-1,1777-1777[UP5];7-7,x-x[BULq];18-21,1761-1758[UP3]	....((((((((((-(((((.&.))))).))))))))))....	GUAGAGGAGAGUUG-GUCAAA&AUUGAUUCAACUCUUCUAUUU	2	0.996655159151393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN4514_c1_g2_1769_TPlot.pdf
TRINITY_DN4514_c1_g2:1825	si_a789	TRINITY_DN4514_c1_g2	1815	1834	1825	-24.80	-18.10	0.729838709677419	5.5	1-11,1834-1824;13-18,1823-1818	12-12,x-x[BULq];19-21,1817-1815[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CUCGGAGAA-AGAAAAAUAGA&UCUAUUUUUCUAUUUUCCAAU	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4514_c1_g2_1825_TPlot.pdf
TRINITY_DN4514_c1_g2:1828	si_a786	TRINITY_DN4514_c1_g2	1818	1837	1828	-26.60	-17.90	0.672932330827068	6.5	4-14,1834-1824;16-21,1823-1818	1-3,1837-1835[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	GGAGAA-AGAAAAAUAGAUAA&UCUUCUAUUUUUCUAUUUUCC	4	0.999999999996916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN4514_c1_g2_1828_TPlot.pdf
TRINITY_DN4514_c1_g2:3443	si_a556	TRINITY_DN4514_c1_g2	3431	3452	3443	-33.40	-22.90	0.68562874251497	11	4-14,3449-3439;15-18,3437-3434	1-3,3452-3450[UP5];x-x,3438-3438[BULt];19-21,3433-3431[UP3]	...((((.(((((((((((...&...)))))))))))-))))...	GAAACGGCGGAGAUGAGGAUAU&AUUUCUUUAUCUCC-CCGUGAA	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN4514_c1_g2_3443_TPlot.pdf
TRINITY_DN4514_c1_g2:3483	si_s368	TRINITY_DN4514_c1_g2	3471	3492	3483	-40.10	-26.90	0.670822942643391	12	6-11,3487-3482;13-15,3480-3478;16-21,3476-3471	1-5,3492-3488[UP5];12-12,3481-3481[SIL];x-x,3477-3477[BULt]	((((((.(((.((((((.....&.....)))))).)))-))))))	ACACGCUGAGGGAUCGGGUACG&UUGAACCGAUCGCUC-GCGUGU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN4514_c1_g2_3483_TPlot.pdf
TRINITY_DN4514_c1_g2:3600	si_a770	TRINITY_DN4514_c1_g2	3589	3608	3600	-28.70	-18.70	0.651567944250871	6.5	1-8,3608-3601;10-13,3600-3597;15-21,3595-3589	9-9,x-x[BULq];14-14,3596-3596[SIL]	(((((((.((((-((((((((&)))))))).)))).)))))))	GGAGAGUAGAGU-AGUCAGAA&UUUUGAUUGAUUCAACUCUUC	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN4514_c1_g2_3600_TPlot.pdf
TRINITY_DN4514_c1_g2:3639	si_s73	TRINITY_DN4514_c1_g2	3628	3648	3639	-24.00	-17.40	0.725	8	1-5,3648-3644;7-18,3642-3631	6-6,3643-3643[SIL];19-21,3630-3628[UP3]	...((((((((((((.(((((&))))).))))))))))))...	ACUGGGAAGAAGAAGUAUAGG&UCUAUUUUUUUUCUUUCCUUU	4	0.999999999999935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4514_c1_g2_3639_TPlot.pdf
TRINITY_DN4514_c9_g1:766	si_s14	TRINITY_DN4514_c9_g1	756	775	766	-25.30	-17.10	0.675889328063241	5	1-12,775-764;15-17,762-760;20-21,757-756	13-14,763-763[AILq];18-19,759-758[SIL]	((..(((.-((((((((((((&))))))))))))..)))..))	GCUUUCAG-GUAGUAAUAAUA&UAUUAUUACUAUAUUGAUUGC	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN4514_c9_g1_766_TPlot.pdf
TRINITY_DN4514_c9_g1:914	si_a478	TRINITY_DN4514_c9_g1	903	924	914	-21.30	-15.60	0.732394366197183	5	1-9,924-916;10-18,914-906	x-x,915-915[BULt];19-21,905-903[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AUUUUCUAUAUAUACAAUAAUU&AAUUAUUGU-UAUAUAGAAUAU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN4514_c9_g1_914_TPlot.pdf
TRINITY_DN4514_c9_g1:917	si_a476	TRINITY_DN4514_c9_g1	905	926	917	-22.90	-18.00	0.786026200873363	3.5	1-11,926-916;12-20,914-906	x-x,915-915[BULt];21-21,905-905[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	UUUCUAUAUAUACAAUAAUUAU&GUAAUUAUUGU-UAUAUAGAAU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN4514_c9_g1_917_TPlot.pdf
TRINITY_DN4514_c9_g1:918	si_a475	TRINITY_DN4514_c9_g1	906	927	918	-23.50	-17.90	0.761702127659574	4	2-12,926-916;13-21,914-906	1-1,927-927[UP5];x-x,915-915[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	UUCUAUAUAUACAAUAAUUAUU&UGUAAUUAUUGU-UAUAUAGAA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN4514_c9_g1_918_TPlot.pdf
TRINITY_DN4514_c9_g1:919	si_a474	TRINITY_DN4514_c9_g1	907	928	919	-23.60	-17.00	0.720338983050847	5	3-13,926-916;14-21,914-907	1-2,928-927[UP5];x-x,915-915[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UCUAUAUAUACAAUAAUUAUUA&AUGUAAUUAUUGU-UAUAUAGA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN4514_c9_g1_919_TPlot.pdf
TRINITY_DN45162_c0_g1:100	si_s808	TRINITY_DN45162_c0_g1	89	109	100	-28.60	-20.80	0.727272727272727	8.5	1-9,109-101;11-19,99-91	10-10,100-100[SIL];20-21,90-89[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GAAGGAGGAGGCGAUGAAGGU&AUCUUCGUUACCUUUUCUUAA	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN45162_c0_g1_100_TPlot.pdf
TRINITY_DN45162_c0_g1:101	si_s807	TRINITY_DN45162_c0_g1	90	110	101	-28.90	-21.60	0.747404844290658	8	1-10,110-101;12-20,99-91	11-11,100-100[SIL];21-21,90-90[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AAGGAGGAGGCGAUGAAGGUG&UAUCUUCGUUACCUUUUCUUA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN45162_c0_g1_101_TPlot.pdf
TRINITY_DN45162_c0_g1:102	si_s806	TRINITY_DN45162_c0_g1	91	111	102	-28.60	-21.70	0.758741258741259	8.5	2-11,110-101;13-21,99-91	1-1,111-111[UP5];12-12,100-100[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AGGAGGAGGCGAUGAAGGUGG&UUAUCUUCGUUACCUUUUCUU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN45162_c0_g1_102_TPlot.pdf
TRINITY_DN45162_c0_g1:103	si_s805	TRINITY_DN45162_c0_g1	92	112	103	-28.60	-22.50	0.786713286713287	7.5	1-12,112-101;14-21,99-92	13-13,100-100[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAGGAGGCGAUGAAGGUGGA&UUUAUCUUCGUUACCUUUUCU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN45162_c0_g1_103_TPlot.pdf
TRINITY_DN45162_c0_g1:104	si_s804	TRINITY_DN45162_c0_g1	93	113	104	-27.90	-21.60	0.774193548387097	7.5	2-13,112-101;15-21,99-93	1-1,113-113[UP5];14-14,100-100[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	GAGGAGGCGAUGAAGGUGGAG&UUUUAUCUUCGUUACCUUUUC	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN45162_c0_g1_104_TPlot.pdf
TRINITY_DN45162_c0_g1:105	si_s803	TRINITY_DN45162_c0_g1	94	114	105	-26.00	-18.40	0.707692307692308	9.5	3-14,112-101;16-21,99-94	1-2,114-113[UP5];15-15,100-100[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGGAGGCGAUGAAGGUGGAGA&AUUUUAUCUUCGUUACCUUUU	3	0.999995920298892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN45162_c0_g1_105_TPlot.pdf
TRINITY_DN45162_c0_g1:106	si_s802	TRINITY_DN45162_c0_g1	95	115	106	-26.40	-17.60	0.666666666666667	11	4-15,112-101;17-21,99-95	1-3,115-113[UP5];16-16,100-100[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GGAGGCGAUGAAGGUGGAGAA&UAUUUUAUCUUCGUUACCUUU	4	0.999999999236631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN45162_c0_g1_106_TPlot.pdf
TRINITY_DN45162_c0_g1:222	si_s87	TRINITY_DN45162_c0_g1	211	230	222	-32.90	-22.80	0.693009118541034	6	2-6,229-225;8-18,224-214	1-1,230-230[UP5];7-7,x-x[BULq];19-21,213-211[UP3]	...(((((((((((-(((((.&.))))).)))))))))))...	UCCCGAAGAAGAAG-AAGGAU&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999999751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN45162_c0_g1_222_TPlot.pdf
TRINITY_DN45162_c0_g1:223	si_s86	TRINITY_DN45162_c0_g1	212	231	223	-32.90	-22.80	0.693009118541034	7	3-7,229-225;9-19,224-214	1-2,231-230[UP5];8-8,x-x[BULq];20-21,213-212[UP3]	..(((((((((((-(((((..&..))))).)))))))))))..	CCCGAAGAAGAAG-AAGGAUG&UUUCCUUUCUUCUUCUUCGCU	3	0.999999999997664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN45162_c0_g1_223_TPlot.pdf
TRINITY_DN45162_c0_g1:86	si_a68	TRINITY_DN45162_c0_g1	75	96	86	-25.40	-18.50	0.728346456692913	11	1-8,96-89;11-20,85-76	9-10,88-86[AILt];21-21,75-75[UP3]	.((((((((((...((((((((&))))))))-..)))))))))).	CGGAAGGCGAUGAAGAAGGAGG&CUUCUUUC-AAAUUGUUUUUCA	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN45162_c0_g1_86_TPlot.pdf
TRINITY_DN45162_c0_g1:87	si_a67	TRINITY_DN45162_c0_g1	76	100	87	-27.20	-19.16	0.704411764705882	17	1-9,100-92;12-21,85-76	10-11,91-86[AILt]	((((((((((......(((((((((&)))))))))----..))))))))))	GGAAGGCGAUGAAGAAGGAGGAGGC&GCUUCUUUC----AAAUUGUUUUUC	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN45162_c0_g1_87_TPlot.pdf
TRINITY_DN45162_c0_g1:88	si_s89	TRINITY_DN45162_c0_g1	75	97	88	-35.30	-24.40	0.691218130311615	7	2-12,96-86;14-18,84-80;19-21,77-75	1-1,97-97[UP5];13-13,85-85[SIL];x-x,79-78[BULt]	(((..(((((.(((((((((((.&.))))))))))).)))))--)))	CGGAAGGCGAUGAAGAAGGAGGA&CCUUUCUUCUUCUUCGCU--UCG	3	0.99999998894844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN45162_c0_g1_88_TPlot.pdf
TRINITY_DN45162_c0_g1:89	si_s88	TRINITY_DN45162_c0_g1	78	97	89	-34.80	-24.10	0.692528735632184	5.5	1-5,97-93;7-13,92-86;15-20,84-79	6-6,x-x[BULq];14-14,85-85[SIL];21-21,78-78[UP3]	.((((((.(((((((-(((((&))))).))))))).)))))).	AAGGCGAUGAAGAAG-GAGGA&UCCUUUCUUCUUCUUCGCUUC	4	0.999999998721042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN45162_c0_g1_89_TPlot.pdf
TRINITY_DN45162_c0_g1:90	si_s87	TRINITY_DN45162_c0_g1	79	98	90	-32.90	-24.50	0.74468085106383	5	1-6,98-93;8-14,92-86;16-21,84-79	7-7,x-x[BULq];15-15,85-85[SIL]	((((((.(((((((-((((((&)))))).))))))).))))))	AGGCGAUGAAGAAG-GAGGAG&UUCCUUUCUUCUUCUUCGCUU	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN45162_c0_g1_90_TPlot.pdf
TRINITY_DN45162_c0_g1:91	si_s86	TRINITY_DN45162_c0_g1	80	99	91	-32.90	-24.20	0.735562310030395	6	1-7,99-93;9-15,92-86;17-21,84-80	8-8,x-x[BULq];16-16,85-85[SIL]	(((((.(((((((-(((((((&))))))).))))))).)))))	GGCGAUGAAGAAG-GAGGAGG&UUUCCUUUCUUCUUCUUCGCU	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN45162_c0_g1_91_TPlot.pdf
TRINITY_DN45162_c0_g1:92	si_a66	TRINITY_DN45162_c0_g1	77	101	92	-26.70	-18.86	0.706367041198502	17	1-10,101-92;13-21,85-77	11-12,91-86[AILt]	(((((((((......((((((((((&))))))))))----..)))))))))	GAAGGCGAUGAAGAAGGAGGAGGCG&CGCUUCUUUC----AAAUUGUUUUU	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN45162_c0_g1_92_TPlot.pdf
TRINITY_DN45162_c0_g1:93	si_a65	TRINITY_DN45162_c0_g1	78	102	93	-27.70	-18.96	0.684476534296029	15.5	1-11,102-92;14-21,85-78	12-13,91-86[AILt]	((((((((......(((((((((((&)))))))))))----..))))))))	AAGGCGAUGAAGAAGGAGGAGGCGA&UCGCUUCUUUC----AAAUUGUUUU	3	0.999988999145849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN45162_c0_g1_93_TPlot.pdf
TRINITY_DN45162_c0_g1:96	si_s84	TRINITY_DN45162_c0_g1	85	109	96	-32.30	-21.70	0.671826625386997	13.5	2-6,108-104;7-20,99-86	1-1,109-109[UP5];x-x,103-100[BULt];21-21,85-85[UP3]	.((((((((((((((....(((((.&.)))))----)))))))))))))).	UGAAGAAGGAGGAGGCGAUGAAGGU&UCUUUC----CUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN45162_c0_g1_96_TPlot.pdf
TRINITY_DN45162_c0_g1:97	si_s83	TRINITY_DN45162_c0_g1	86	106	97	-30.90	-21.20	0.686084142394822	8.5	1-3,106-104;6-7,102-101;8-21,99-86	4-5,103-103[AILq];x-x,100-100[BULt]	((((((((((((((.((.-(((&)))..))-))))))))))))))	GAAGAAGGAGGAGGCGAU-GAA&UUCUUUC-CUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN45162_c0_g1_97_TPlot.pdf
TRINITY_DN45162_c0_g1:98	si_s810	TRINITY_DN45162_c0_g1	87	107	98	-27.90	-19.00	0.681003584229391	10	1-7,107-101;9-17,99-91	8-8,100-100[SIL];18-21,90-87[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AAGAAGGAGGAGGCGAUGAAG&CUUCGUUACCUUUUCUUAAUA	3	0.99999698871827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN45162_c0_g1_98_TPlot.pdf
TRINITY_DN45162_c0_g1:99	si_s809	TRINITY_DN45162_c0_g1	88	108	99	-28.50	-19.20	0.673684210526316	9	1-8,108-101;10-18,99-91	9-9,100-100[SIL];19-21,90-88[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AGAAGGAGGAGGCGAUGAAGG&UCUUCGUUACCUUUUCUUAAU	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN45162_c0_g1_99_TPlot.pdf
TRINITY_DN4516_c0_g1:286	si_s88	TRINITY_DN4516_c0_g1	276	296	286	-34.80	-23.20	0.666666666666667	4.5	1-6,296-291;7-17,289-279;19-21,278-276	x-x,290-290[BULt];18-18,x-x[BULq]	(((-(((((((((((.((((((&))))))-))))))))))).)))	GAA-UGAAGGAGAAGAAAAGGA&UCCUUU-CUUCUUCUUCGCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4516_c0_g1_286_TPlot.pdf
TRINITY_DN4516_c0_g1:288	si_s86	TRINITY_DN4516_c0_g1	277	298	288	-32.90	-21.60	0.656534954407295	8	3-8,296-291;9-19,289-279	1-2,298-297[UP5];x-x,290-290[BULt];20-21,278-277[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	AAUGAAGGAGAAGAAAAGGAUG&UUUCCUUU-CUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4516_c0_g1_288_TPlot.pdf
TRINITY_DN4516_c0_g1:297	si_s805	TRINITY_DN4516_c0_g1	288	306	297	-28.60	-19.80	0.692307692307692	6	1-11,306-296;14-21,295-288	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	AGAAAAGG--AUGAAGGUGAA&UUUAUCUUCGUUACCUUUUCU	4	0.999996737848876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4516_c0_g1_297_TPlot.pdf
TRINITY_DN45183_c0_g1:1143	si_s75	TRINITY_DN45183_c0_g1	1129	1152	1143	-24.00	-16.20	0.675	5	1-15,1152-1138;16-16,1136-1136;17-21,1133-1129	x-x,1137-1137[BULt];x-x,1135-1134[BULt]	(((((..(.(((((((((((((((&)))))))))))))))-)--)))))	AGAAAUCGUGAAAGAAAAAGAGUA&UAUUUUUUUUCUUUC-C--UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN45183_c0_g1_1143_TPlot.pdf
TRINITY_DN45183_c0_g1:1379	si_s79	TRINITY_DN45183_c0_g1	1368	1387	1379	-26.20	-19.30	0.736641221374046	7.5	1-7,1387-1381;10-21,1379-1368	8-9,1380-1380[AILq]	((((((((((((.-(((((((&)))))))..))))))))))))	AAGAGGGAAGGAU-GAAAGGG&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN45183_c0_g1_1379_TPlot.pdf
TRINITY_DN45183_c0_g1:1380	si_s78	TRINITY_DN45183_c0_g1	1369	1388	1380	-26.20	-18.60	0.709923664122137	9	2-8,1387-1381;11-21,1379-1369	1-1,1388-1388[UP5];9-10,1380-1380[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	AGAGGGAAGGAU-GAAAGGGC&UUUUUUUCUUUCCUUUCUUCU	2	0.999999999999907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN45183_c0_g1_1380_TPlot.pdf
TRINITY_DN45183_c0_g1:1381	si_s77	TRINITY_DN45183_c0_g1	1370	1389	1381	-25.50	-17.30	0.67843137254902	11	3-9,1387-1381;12-21,1379-1370	1-2,1389-1388[UP5];10-11,1380-1380[AILq]	((((((((((.-(((((((..&..)))))))..))))))))))	GAGGGAAGGAU-GAAAGGGCA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN45183_c0_g1_1381_TPlot.pdf
TRINITY_DN45183_c0_g1:193	si_a635	TRINITY_DN45183_c0_g1	182	211	193	-26.10	-17.30	0.662835249042146	23	1-7,211-205;8-19,195-184	x-x,204-196[BULt];20-21,183-182[UP3]	..((((((((((((.........(((((((&)))))))---------))))))))))))..	GAUGCUCAGAAAGAAGACUUUGCUCGGCAU&AUGUCGA---------UUUUUUUGAGUAAU	4	0.999999999984885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN45183_c0_g1_193_TPlot.pdf
TRINITY_DN45183_c0_g1:360	si_s414	TRINITY_DN45183_c0_g1	349	369	360	-24.90	-16.80	0.674698795180723	10.5	5-6,365-364;8-21,362-349	1-4,369-366[UP5];7-7,363-363[SIL]	((((((((((((((.((....&....)).))))))))))))))	UUGUGUGGAAUAUGCCGAACA&AAAACGACAUAUUCUAUAUAA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN45183_c0_g1_360_TPlot.pdf
TRINITY_DN45194_c0_g1:678	si_a629	TRINITY_DN45194_c0_g1	667	687	678	-26.30	-17.60	0.669201520912548	7.5	2-9,686-679;11-19,677-669	1-1,687-687[UP5];10-10,678-678[SIL];20-21,668-667[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CCAGAAAAUCGCCAUGAUGCA&CGUAUUAUGUCGAUUUUUUUG	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN45194_c0_g1_678_TPlot.pdf
TRINITY_DN45198_c0_g1:364	si_a145	TRINITY_DN45198_c0_g1	353	373	364	-28.10	-18.30	0.651245551601424	9.5	4-14,370-360;16-19,358-355	1-3,373-371[UP5];15-15,359-359[SIL];20-21,354-353[UP3]	..((((.(((((((((((...&...))))))))))).))))..	AACUUACAGCAGCAACGACCG&UAAUCGUUGUUGUUUUAAGGU	3	0.999999610255606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN45198_c0_g1_364_TPlot.pdf
TRINITY_DN45198_c0_g1:817	si_a17	TRINITY_DN45198_c0_g1	806	826	817	-24.30	-16.70	0.687242798353909	11.5	4-17,823-810	1-3,826-824[UP5];18-21,809-806[UP3]	....((((((((((((((...&...))))))))))))))....	UGAAAGAAAUGAAUGGGCGAU&AAAGCCUAUUUAUUUUUAGUU	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN45198_c0_g1_817_TPlot.pdf
TRINITY_DN4519_c0_g1:4543	si_s78	TRINITY_DN4519_c0_g1	4531	4552	4543	-26.20	-20.00	0.763358778625954	9	1-12,4552-4541;13-19,4539-4533	x-x,4540-4540[BULt];20-21,4532-4531[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	AUGAGAGAGAGAGAGAGAGAGA&UUUUUUUCUUUC-CUUUCUUCU	3	0.999999998831755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4519_c0_g1_4543_TPlot.pdf
TRINITY_DN4519_c0_g1:4544	si_s77	TRINITY_DN4519_c0_g1	4532	4553	4544	-25.50	-20.90	0.819607843137255	7	1-13,4553-4541;14-20,4539-4533	x-x,4540-4540[BULt];21-21,4532-4532[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	UGAGAGAGAGAGAGAGAGAGAA&UUUUUUUUCUUUC-CUUUCUUC	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4519_c0_g1_4544_TPlot.pdf
TRINITY_DN4519_c0_g1:4545	si_s76	TRINITY_DN4519_c0_g1	4533	4554	4545	-23.60	-20.90	0.885593220338983	7	2-14,4553-4541;15-21,4539-4533	1-1,4554-4554[UP5];x-x,4540-4540[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	GAGAGAGAGAGAGAGAGAGAAA&AUUUUUUUUCUUUC-CUUUCUU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4519_c0_g1_4545_TPlot.pdf
TRINITY_DN4519_c0_g1:4546	si_s75	TRINITY_DN4519_c0_g1	4534	4555	4546	-24.00	-19.80	0.825	8	3-15,4553-4541;16-21,4539-4534	1-2,4555-4554[UP5];x-x,4540-4540[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAGAGAGAGAGAGAGAGAAAU&UAUUUUUUUUCUUUC-CUUUCU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4519_c0_g1_4546_TPlot.pdf
TRINITY_DN4519_c0_g1:4548	si_s69	TRINITY_DN4519_c0_g1	4537	4556	4548	-23.40	-15.40	0.658119658119658	10.5	4-7,4553-4550;9-21,4549-4537	1-3,4556-4554[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	GAGAGAGAGAGAG-AGAAAUU&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4519_c0_g1_4548_TPlot.pdf
TRINITY_DN4519_c0_g2:2629	si_a603	TRINITY_DN4519_c0_g2	2618	2639	2629	-29.80	-21.70	0.728187919463087	9	4-7,2636-2633;8-21,2631-2618	1-3,2639-2637[UP5];x-x,2632-2632[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	UUGGUUGGAGUUGCAGAAACGA&AAUUUUC-GCAAUUCCAAUCGA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN4519_c0_g2_2629_TPlot.pdf
TRINITY_DN4519_c0_g2:345	si_s430	TRINITY_DN4519_c0_g2	334	354	345	-21.30	-14.20	0.666666666666667	8	2-12,353-343;14-18,341-337	1-1,354-354[UP5];13-13,342-342[SIL];19-21,336-334[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	GCUUAUGUUGUUGUUGUUGUU&UAUAACAAUAAUUACAUAUUA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN4519_c0_g2_345_TPlot.pdf
TRINITY_DN451_c0_g1:1059	si_a776	TRINITY_DN451_c0_g1	1048	1068	1059	-27.10	-18.30	0.675276752767528	10.5	3-17,1066-1052	1-2,1068-1067[UP5];18-21,1051-1048[UP3]	....(((((((((((((((..&..)))))))))))))))....	CGUUUGGGGGAGUUGGAUUUA&UUGAUUCAACUCUUCUAUUUU	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN451_c0_g1_1059_TPlot.pdf
TRINITY_DN451_c0_g1:1337	si_a863	TRINITY_DN451_c0_g1	1324	1346	1337	-24.40	-16.10	0.659836065573771	7	2-4,1345-1343;6-13,1341-1334;14-21,1331-1324	1-1,1346-1346[UP5];5-5,1342-1342[SIL];x-x,1333-1332[BULt]	((((((((..((((((((.(((.&.))).))))))))--))))))))	CUGGAUCUAUUUGAUAAUCGGAG&AUCCAAUUAUUAA--AGAUUUAG	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN451_c0_g1_1337_TPlot.pdf
TRINITY_DN4520_c1_g1:34	si_a463	TRINITY_DN4520_c1_g1	22	43	34	-19.70	-13.10	0.66497461928934	5	1-3,43-41;5-13,39-31;14-21,29-22	4-4,40-40[SIL];x-x,30-30[BULt]	((((((((.(((((((((.(((&))).)))))))))-))))))))	AUAGUUGCUAUAUUAUAUUUGA&UUAUAUAUAAUAU-GUAAUUAU	1	0.103848827801371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN4520_c1_g1_34_TPlot.pdf
TRINITY_DN4520_c1_g1:35	si_a462	TRINITY_DN4520_c1_g1	23	44	35	-21.20	-15.00	0.707547169811321	5	1-4,44-41;6-14,39-31;15-21,29-23	5-5,40-40[SIL];x-x,30-30[BULt]	(((((((.(((((((((.((((&)))).)))))))))-)))))))	UAGUUGCUAUAUUAUAUUUGAC&GUUAUAUAUAAUAU-GUAAUUA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN4520_c1_g1_35_TPlot.pdf
TRINITY_DN45212_c0_g1:184	si_s521	TRINITY_DN45212_c0_g1	173	195	184	-23.90	-15.84	0.662761506276151	12	1-5,195-191;10-21,184-173	6-9,190-185[AILt]	((((((((((((......(((((&)))))--....))))))))))))	AAAAUGAUUUCGUUAAAGAAGAA&UUCUU--AAUUCGAAAUCAUUUU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN45212_c0_g1_184_TPlot.pdf
TRINITY_DN45218_c0_g1:94	si_a273	TRINITY_DN45218_c0_g1	83	102	94	-36.10	-23.50	0.650969529085873	6.5	2-8,101-95;10-14,94-90;16-21,88-83	1-1,102-102[UP5];9-9,x-x[BULq];15-15,89-89[SIL]	((((((.(((((-(((((((.&.))))))).))))).))))))	GGUGGUGUUUUC-UGGGCGUC&AACGCCUACGAAAAGAUCGCU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a273_TRINITY_DN45218_c0_g1_94_TPlot.pdf
TRINITY_DN45219_c0_g1:66	si_a468	TRINITY_DN45219_c0_g1	56	75	66	-21.30	-15.70	0.737089201877934	6	2-11,74-65;13-20,64-57	1-1,75-75[UP5];12-12,x-x[BULq];21-21,56-56[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	GAGCAAUGA-UACAUGUUAUU&UAUAAUAUGUAAUUAUUGUUA	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN45219_c0_g1_66_TPlot.pdf
TRINITY_DN4522_c0_g1:174	si_s439	TRINITY_DN4522_c0_g1	163	183	174	-21.50	-14.70	0.683720930232558	9	3-16,181-168;19-20,165-164	1-2,183-182[UP5];17-18,167-166[SIL];21-21,163-163[UP3]	.((..((((((((((((((..&..))))))))))))))..)).	GGUAUUGUGUGAUAUGUGAAA&AAUUACAUAUUAUAUAUAACA	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN4522_c0_g1_174_TPlot.pdf
TRINITY_DN4523_c0_g2:192	si_a153	TRINITY_DN4523_c0_g2	182	201	192	-28.70	-19.60	0.682926829268293	3	1-13,201-189;15-21,188-182	14-14,x-x[BULq]	(((((((-(((((((((((((&))))))))))))).)))))))	AUGGGUU-ACUUUAAAACAAC&GUUGUUUUAAGGUCAAUCUAU	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN4523_c0_g2_192_TPlot.pdf
TRINITY_DN4524_c0_g1:1075	si_a784	TRINITY_DN4524_c0_g1	1064	1086	1075	-24.70	-16.40	0.663967611336032	8	1-5,1086-1082;6-15,1079-1070;17-21,1068-1064	x-x,1081-1080[BULt];16-16,1069-1069[SIL]	(((((.((((((((((..(((((&)))))--)))))))))).)))))	AAAAUCGAAGAAUGGAAUGGAGU&ACUCU--UCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4524_c0_g1_1075_TPlot.pdf
TRINITY_DN4524_c0_g1:1185	si_s758	TRINITY_DN4524_c0_g1	1174	1194	1185	-23.50	-16.10	0.685106382978724	14.5	7-18,1188-1177	1-6,1194-1189[UP5];19-21,1176-1174[UP3]	...((((((((((((......&......))))))))))))...	AUCUGAUCGUUGUUGAUGUAC&UUAAAACAACAACGAUUAAUU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN4524_c0_g1_1185_TPlot.pdf
TRINITY_DN4524_c0_g1:1251	si_s815	TRINITY_DN4524_c0_g1	1239	1260	1251	-25.00	-16.30	0.652	7.5	3-10,1258-1251;11-18,1249-1242;20-21,1240-1239	1-2,1260-1259[UP5];x-x,1250-1250[BULt];19-19,1241-1241[SIL]	((.((((((((.((((((((..&..))))))))-)))))))).))	UUGAUUGUUAAUGAAGAGGUCG&UUACCUUUUC-UUAAUAAUGAA	2	0.986849030460239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN4524_c0_g1_1251_TPlot.pdf
TRINITY_DN4524_c0_g1:1584	si_s74	TRINITY_DN4524_c0_g1	1573	1593	1584	-25.00	-17.30	0.692	8	1-16,1593-1578	17-21,1577-1573[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUCAAGAAAGAGAAGAAGUAG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4524_c0_g1_1584_TPlot.pdf
TRINITY_DN4524_c0_g1:1587	si_s71	TRINITY_DN4524_c0_g1	1576	1596	1587	-25.70	-17.30	0.673151750972763	9.5	4-19,1593-1578	1-3,1596-1594[UP5];20-21,1577-1576[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAAAGAGAAGAAGUAGUCG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4524_c0_g1_1587_TPlot.pdf
TRINITY_DN45250_c0_g1:228	si_a187	TRINITY_DN45250_c0_g1	217	237	228	-32.00	-22.80	0.7125	8	4-11,234-227;13-21,225-217	1-3,237-235[UP5];12-12,226-226[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AGUGAACAGAGAAGGAUACAU&UAAUAUCUUUCCCUGUUCACU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN45250_c0_g1_228_TPlot.pdf
TRINITY_DN45253_c0_g1:625	si_s77	TRINITY_DN45253_c0_g1	614	634	625	-25.50	-18.60	0.729411764705882	8	1-4,634-631;6-19,629-616	5-5,630-630[SIL];20-21,615-614[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GUAGAAAGGAAAGGGACGAGA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN45253_c0_g1_625_TPlot.pdf
TRINITY_DN45258_c0_g1:734	si_s116	TRINITY_DN45258_c0_g1	723	743	734	-24.70	-18.70	0.757085020242915	5	2-19,742-725	1-1,743-743[UP5];20-21,724-723[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAUUUUCUGUUUUUCUGUUUA&AAAAUAGAAAAAUAGAAGAGU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN45258_c0_g1_734_TPlot.pdf
TRINITY_DN45258_c0_g1:735	si_s115	TRINITY_DN45258_c0_g1	724	744	735	-25.90	-18.70	0.722007722007722	6	3-20,742-725	1-2,744-743[UP5];21-21,724-724[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AUUUUCUGUUUUUCUGUUUAA&GAAAAUAGAAAAAUAGAAGAG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s115_TRINITY_DN45258_c0_g1_735_TPlot.pdf
TRINITY_DN45258_c0_g1:738	si_s112	TRINITY_DN45258_c0_g1	727	747	738	-24.80	-19.40	0.782258064516129	5.5	1-3,747-745;6-21,742-727	4-5,744-743[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	UUCUGUUUUUCUGUUUAACAA&UUGGAAAAUAGAAAAAUAGAA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s112_TRINITY_DN45258_c0_g1_738_TPlot.pdf
TRINITY_DN45258_c0_g1:739	si_s111	TRINITY_DN45258_c0_g1	728	748	739	-24.80	-18.50	0.745967741935484	6.5	2-4,747-745;7-21,742-728	1-1,748-748[UP5];5-6,744-743[SIL]	(((((((((((((((..(((.&.)))..)))))))))))))))	UCUGUUUUUCUGUUUAACAAA&AUUGGAAAAUAGAAAAAUAGA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN45258_c0_g1_739_TPlot.pdf
TRINITY_DN4525_c0_g1:1778	si_s679	TRINITY_DN4525_c0_g1	1767	1788	1778	-25.20	-17.10	0.678571428571429	6	1-7,1788-1782;8-15,1780-1773;17-21,1771-1767	x-x,1781-1781[BULt];16-16,1772-1772[SIL]	(((((.((((((((.(((((((&)))))))-)))))))).)))))	AUUAGCCUCGUGUUCUCUGUAG&UUAUAGA-AACAUGAGUUUAAU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN4525_c0_g1_1778_TPlot.pdf
TRINITY_DN4525_c0_g1:632	si_s71	TRINITY_DN4525_c0_g1	621	642	632	-25.70	-17.10	0.665369649805448	8	1-5,642-638;7-19,635-623	6-6,637-636[AILt];20-21,622-621[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	UCGAAAGAAGAAGAAAAAGAAG&CUUCU-AUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4525_c0_g1_632_TPlot.pdf
TRINITY_DN4525_c0_g1:633	si_s70	TRINITY_DN4525_c0_g1	622	643	633	-25.80	-17.10	0.662790697674419	7.5	2-6,642-638;8-20,635-623	1-1,643-643[UP5];7-7,637-636[AILt];21-21,622-622[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	CGAAAGAAGAAGAAAAAGAAGA&ACUUCU-AUUUUUUUUCUUUCC	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4525_c0_g1_633_TPlot.pdf
TRINITY_DN4525_c0_g1:641	si_s77	TRINITY_DN4525_c0_g1	630	650	641	-25.50	-17.30	0.67843137254902	4	1-12,650-639;15-21,636-630	13-14,638-637[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAAAAGAAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4525_c0_g1_641_TPlot.pdf
TRINITY_DN4525_c0_g1:748	si_a320	TRINITY_DN4525_c0_g1	737	757	748	-24.40	-15.90	0.651639344262295	7.5	1-9,757-749;12-18,746-740	10-11,748-747[SIL];19-21,739-737[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	UAUUAAGAAAGGCAUGGAUAA&UUAUCCAUGAUUUUUUUAUUC	4	0.999999999220709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN4525_c0_g1_748_TPlot.pdf
TRINITY_DN4525_c1_g3:892	si_a486	TRINITY_DN4525_c1_g3	881	901	892	-24.90	-16.50	0.662650602409639	8.5	1-14,901-888;17-19,885-883	15-16,887-886[SIL];20-21,882-881[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN4525_c1_g3_892_TPlot.pdf
TRINITY_DN4525_c4_g1:152	si_a120	TRINITY_DN4525_c4_g1	141	162	152	-30.50	-21.10	0.691803278688525	10.5	1-9,162-154;14-21,148-141	10-13,153-149[AILt]	((((((((.....(((((((((&)))))))))-....))))))))	UUAUUGCUUCAAUAACGAGCUC&GAGCUUGUU-UUAUAGCAAUAG	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN4525_c4_g1_152_TPlot.pdf
TRINITY_DN4525_c5_g1:827	si_s83	TRINITY_DN4525_c5_g1	816	836	827	-30.90	-22.00	0.711974110032362	9	4-18,833-819	1-3,836-834[UP5];19-21,818-816[UP3]	...(((((((((((((((...&...)))))))))))))))...	CUUGAAGAAGAAAGGAGACAU&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4525_c5_g1_827_TPlot.pdf
TRINITY_DN45262_c0_g1:144	si_s317	TRINITY_DN45262_c0_g1	133	153	144	-33.10	-22.10	0.667673716012085	7.5	1-3,153-151;5-11,149-143;13-17,141-137;20-21,134-133	4-4,150-150[SIL];12-12,142-142[SIL];18-19,136-135[SIL]	((..(((((.(((((((.(((&))).))))))).)))))..))	GUAGGUGACCGGAAGGAGAGA&UCUGUCCUUCUUGUUACAAAC	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN45262_c0_g1_144_TPlot.pdf
TRINITY_DN4526_c0_g1:11074	si_s76	TRINITY_DN4526_c0_g1	11063	11083	11074	-23.60	-15.60	0.661016949152542	10	4-17,11080-11067;19-19,11065-11065	1-3,11083-11081[UP5];18-18,11066-11066[SIL];20-21,11064-11063[UP3]	..(.((((((((((((((...&...)))))))))))))).)..	UCGCAAGGAAAGAAGAAGCCU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4526_c0_g1_11074_TPlot.pdf
TRINITY_DN4526_c0_g1:11075	si_s75	TRINITY_DN4526_c0_g1	11064	11084	11075	-24.00	-15.60	0.65	11	5-18,11080-11067;20-20,11065-11065	1-4,11084-11081[UP5];19-19,11066-11066[SIL];21-21,11064-11064[UP3]	.(.((((((((((((((....&....)))))))))))))).).	CGCAAGGAAAGAAGAAGCCUG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4526_c0_g1_11075_TPlot.pdf
TRINITY_DN4526_c0_g1:11079	si_s71	TRINITY_DN4526_c0_g1	11068	11087	11079	-25.70	-18.32	0.71284046692607	10	1-4,11087-11084;9-21,11080-11068	5-8,11083-11081[AILq]	(((((((((((((...-((((&))))....)))))))))))))	AGGAAAGAAGAAGCCU-GAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4526_c0_g1_11079_TPlot.pdf
TRINITY_DN4526_c0_g1:11385	si_s86	TRINITY_DN4526_c0_g1	11371	11394	11385	-32.90	-21.50	0.653495440729483	9	1-10,11394-11385;11-12,11382-11381;14-17,11379-11376;18-21,11374-11371	x-x,11384-11383[BULt];13-13,11380-11380[SIL];x-x,11375-11375[BULt]	((((.((((.((..((((((((((&))))))))))--)).))))-))))	GGCGUGAGAUGACCAGAGAGGAGA&UUUCCUUUCU--UCUUCUU-CGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4526_c0_g1_11385_TPlot.pdf
TRINITY_DN4526_c0_g1:11386	si_s85	TRINITY_DN4526_c0_g1	11372	11395	11386	-33.80	-22.90	0.677514792899408	8.5	1-11,11395-11385;12-13,11382-11381;15-18,11379-11376;19-21,11374-11372	x-x,11384-11383[BULt];14-14,11380-11380[SIL];x-x,11375-11375[BULt]	(((.((((.((..(((((((((((&)))))))))))--)).))))-)))	GCGUGAGAUGACCAGAGAGGAGAG&CUUUCCUUUCU--UCUUCUU-CGC	3	0.99999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4526_c0_g1_11386_TPlot.pdf
TRINITY_DN4526_c0_g1:11401	si_s552	TRINITY_DN4526_c0_g1	11390	11410	11401	-21.10	-14.80	0.701421800947867	10.5	5-20,11406-11391	1-4,11410-11407[UP5];21-21,11390-11390[UP3]	.((((((((((((((((....&....)))))))))))))))).	GGAGAGUGUUAAUUUUAAGUU&AAAAUAGAAUUAAUAUUUUCG	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN4526_c0_g1_11401_TPlot.pdf
TRINITY_DN4526_c0_g1:11402	si_s551	TRINITY_DN4526_c0_g1	11391	11411	11402	-21.30	-14.20	0.666666666666667	11.5	6-21,11406-11391	1-5,11411-11407[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAGUGUUAAUUUUAAGUUA&CAAAAUAGAAUUAAUAUUUUC	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN4526_c0_g1_11402_TPlot.pdf
TRINITY_DN4526_c0_g1:1415	si_a372	TRINITY_DN4526_c0_g1	1404	1423	1415	-29.40	-19.60	0.666666666666667	8	2-8,1422-1416;11-19,1414-1406	1-1,1423-1423[UP5];9-10,1415-1415[AILq];20-21,1405-1404[UP3]	..(((((((((.-(((((((.&.)))))))..)))))))))..	AACGAAAUCAUC-UUGGUCCU&CGGAUCAAAAAUGAUUUCGAA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN4526_c0_g1_1415_TPlot.pdf
TRINITY_DN4526_c0_g1:1416	si_a370	TRINITY_DN4526_c0_g1	1406	1425	1416	-29.50	-19.60	0.664406779661017	10	4-10,1422-1416;13-21,1414-1406	1-3,1425-1423[UP5];11-12,1415-1415[AILq]	(((((((((.-(((((((...&...)))))))..)))))))))	CGAAAUCAUC-UUGGUCCUGA&AUCGGAUCAAAAAUGAUUUCG	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN4526_c0_g1_1416_TPlot.pdf
TRINITY_DN4526_c0_g1:3221	si_s724	TRINITY_DN4526_c0_g1	3210	3230	3221	-31.70	-21.60	0.681388012618297	7.5	4-13,3227-3218;15-17,3216-3214;19-21,3212-3210	1-3,3230-3228[UP5];14-14,3217-3217[SIL];18-18,3213-3213[SIL]	(((.(((.((((((((((...&...)))))))))).))).)))	GCCGGUCAAGAUAAUAUCGAA&AAAGAUAUUAUCUAGACGGGU	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN4526_c0_g1_3221_TPlot.pdf
TRINITY_DN4526_c0_g1:3568	si_a76	TRINITY_DN4526_c0_g1	3552	3577	3568	-21.20	-13.90	0.655660377358491	13	4-14,3574-3564;15-21,3558-3552	1-3,3577-3575[UP5];x-x,3563-3559[BULt]	(((((((.....(((((((((((...&...)))))))))))-----)))))))	CUUAAUGCCGAAGUGAAGAACAGCUU&AAAUUGUUUUUCAU-----UAUUAAG	3	0.999999999999924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN4526_c0_g1_3568_TPlot.pdf
TRINITY_DN4526_c0_g1:6653	si_s109	TRINITY_DN4526_c0_g1	6642	6665	6653	-26.50	-17.60	0.664150943396226	13	1-8,6665-6658;9-15,6654-6648	x-x,6657-6655[BULt];16-21,6647-6642[UP3]	......(((((((...((((((((&))))))))---)))))))......	CCAUUAUCUGUUUCGGUCCAAUCC&GGAUUGGA---AAAUAGAAAAAUA	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN4526_c0_g1_6653_TPlot.pdf
TRINITY_DN4526_c0_g1:7360	si_a285	TRINITY_DN4526_c0_g1	7349	7370	7360	-28.30	-19.20	0.678445229681979	9	1-4,7370-7367;6-16,7364-7354	5-5,7366-7365[AILt];17-21,7353-7349[UP3]	.....(((((((((((..((((&))))-.))))))))))).....	GAACCAAAUCCAAGCGCUUCUU&AAGA-UCGCUUGGAUUUAAAAA	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN4526_c0_g1_7360_TPlot.pdf
TRINITY_DN4526_c0_g1:7361	si_a284	TRINITY_DN4526_c0_g1	7350	7371	7361	-28.30	-19.40	0.685512367491166	9	2-5,7370-7367;7-17,7364-7354	1-1,7371-7371[UP5];6-6,7366-7365[AILt];18-21,7353-7350[UP3]	....(((((((((((..((((.&.))))-.)))))))))))....	AACCAAAUCCAAGCGCUUCUUA&AAAGA-UCGCUUGGAUUUAAAA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN4526_c0_g1_7361_TPlot.pdf
TRINITY_DN4526_c0_g1:7362	si_a304	TRINITY_DN4526_c0_g1	7351	7371	7362	-30.40	-20.80	0.684210526315789	8	2-5,7370-7367;8-18,7364-7354	1-1,7371-7371[UP5];6-7,7366-7365[SIL];19-21,7353-7351[UP3]	...(((((((((((..((((.&.))))..)))))))))))...	ACCAAAUCCAAGCGCUUCUUA&AAAGAUUCGCUUGGAUUUAUC	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN4526_c0_g1_7362_TPlot.pdf
TRINITY_DN4526_c0_g1:7363	si_a303	TRINITY_DN4526_c0_g1	7352	7372	7363	-28.40	-20.80	0.732394366197183	9	3-6,7370-7367;9-19,7364-7354	1-2,7372-7371[UP5];7-8,7366-7365[SIL];20-21,7353-7352[UP3]	..(((((((((((..((((..&..))))..)))))))))))..	CCAAAUCCAAGCGCUUCUUAA&AAAAGAUUCGCUUGGAUUUAU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN4526_c0_g1_7363_TPlot.pdf
TRINITY_DN4526_c0_g1:7367	si_a299	TRINITY_DN4526_c0_g1	7356	7376	7367	-28.30	-18.90	0.667844522968198	15	7-10,7370-7367;13-21,7364-7356	1-6,7376-7371[UP5];11-12,7366-7365[SIL]	(((((((((..((((......&......))))..)))))))))	AUCCAAGCGCUUCUUAAGGCC&UUAAAAAAGAUUCGCUUGGAU	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN4526_c0_g1_7367_TPlot.pdf
TRINITY_DN4526_c0_g1:7742	si_s814	TRINITY_DN4526_c0_g1	7732	7751	7742	-26.60	-17.30	0.650375939849624	7	1-6,7751-7746;9-10,7743-7742;12-21,7741-7732	7-8,7745-7744[SIL];11-11,x-x[BULq]	((((((((((-((..((((((&))))))..)).))))))))))	UCAUUGUUGA-AAUUGGUAAC&GUUACCUUUUCUUAAUAAUGA	2	0.990122750700536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN4526_c0_g1_7742_TPlot.pdf
TRINITY_DN4526_c0_g1:797	si_s195	TRINITY_DN4526_c0_g1	787	807	797	-30.50	-21.70	0.711475409836065	5	1-7,807-801;8-12,799-795;14-21,794-787	x-x,800-800[BULt];13-13,x-x[BULq]	((((((((-(((((.(((((((&)))))))-))))).))))))))	CUGGUACA-UCUAAGGAUAAUC&GAUUAUU-UUGGAAUGUACCAG	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s195_TRINITY_DN4526_c0_g1_797_TPlot.pdf
TRINITY_DN4526_c0_g1:924	si_a633	TRINITY_DN4526_c0_g1	913	933	924	-26.40	-17.70	0.670454545454545	5.5	1-10,933-924;12-18,922-916;20-21,914-913	11-11,923-923[SIL];19-19,915-915[SIL]	((.(((((((.((((((((((&)))))))))).))))))).))	UAGUCAAAAGCAUCGAUAUAG&UUAUGUCGAUUUUUUUGAGUA	4	0.9999999783707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN4526_c0_g1_924_TPlot.pdf
TRINITY_DN4526_c0_g1:925	si_a632	TRINITY_DN4526_c0_g1	914	934	925	-26.10	-17.90	0.685823754789272	5.5	1-11,934-924;13-19,922-916;21-21,914-914	12-12,923-923[SIL];20-20,915-915[SIL]	(.(((((((.(((((((((((&))))))))))).))))))).)	AGUCAAAAGCAUCGAUAUAGU&AUUAUGUCGAUUUUUUUGAGU	4	0.999992998292024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4526_c0_g1_925_TPlot.pdf
TRINITY_DN4526_c0_g1:932	si_s14	TRINITY_DN4526_c0_g1	922	941	932	-25.30	-18.80	0.743083003952569	7.5	3-18,939-924;20-21,923-922	1-2,941-940[UP5];19-19,x-x[BULq]	((-((((((((((((((((..&..)))))))))))))))).))	GC-AUCGAUAUAGUGGUAGGA&UAUUAUUACUAUAUUGAUUGC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN4526_c0_g1_932_TPlot.pdf
TRINITY_DN45290_c0_g1:760	si_a784	TRINITY_DN45290_c0_g1	749	769	760	-24.70	-23.20	0.939271255060729	3.5	2-19,768-751	1-1,769-769[UP5];20-21,750-749[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AUGAUAGAAAAAUAGAAGAGC&ACUCUUCUAUUUUUCUAUUUU	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN45290_c0_g1_760_TPlot.pdf
TRINITY_DN45290_c0_g1:775	si_a20	TRINITY_DN45290_c0_g1	764	783	775	-26.70	-17.62	0.659925093632959	10	1-5,783-779;10-20,775-765	6-9,778-776[AILq];21-21,764-764[UP3]	.(((((((((((...-(((((&)))))....))))))))))).	AAGAGCUAAAAAGUU-UAGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999999912866153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN45290_c0_g1_775_TPlot.pdf
TRINITY_DN45293_c0_g1:323	si_a319	TRINITY_DN45293_c0_g1	312	332	323	-22.40	-14.60	0.651785714285714	9.5	2-15,331-318	1-1,332-332[UP5];16-21,317-312[UP3]	......((((((((((((((.&.))))))))))))))......	GUUCUUAGAAUUAUGGAUGAC&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN45293_c0_g1_323_TPlot.pdf
TRINITY_DN45293_c0_g1:491	si_a503	TRINITY_DN45293_c0_g1	480	500	491	-32.10	-21.10	0.657320872274143	7	3-20,498-481	1-2,500-499[UP5];21-21,480-480[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GGUUUCAAGGAAGGUGAAACU&UUUUUCGUCUUCCUUGGAAUG	4	0.999999998822403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN45293_c0_g1_491_TPlot.pdf
TRINITY_DN452_c0_g1:1286	si_a78	TRINITY_DN452_c0_g1	1277	1295	1286	-22.30	-15.10	0.677130044843049	4.5	2-12,1294-1284;15-21,1283-1277	1-1,1295-1295[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	UUCUUGA--AUGAAAAACAGC&AUUGUUUUUCAUUAUUAAGAA	2	0.999739210418293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN452_c0_g1_1286_TPlot.pdf
TRINITY_DN452_c0_g1:1338	si_a77	TRINITY_DN452_c0_g1	1327	1347	1338	-22.20	-14.80	0.666666666666667	11.5	5-16,1343-1332;19-20,1329-1328	1-4,1347-1344[UP5];17-18,1331-1330[SIL];21-21,1327-1327[UP3]	.((..((((((((((((....&....))))))))))))..)).	GCUGUAUGAUGAGAAACGUGC&AAUUGUUUUUCAUUAUUAAGA	3	0.99999988890655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN452_c0_g1_1338_TPlot.pdf
TRINITY_DN452_c0_g1:1339	si_a76	TRINITY_DN452_c0_g1	1328	1348	1339	-21.20	-14.60	0.688679245283019	12.5	6-17,1343-1332;20-21,1329-1328	1-5,1348-1344[UP5];18-19,1331-1330[SIL]	((..((((((((((((.....&.....))))))))))))..))	CUGUAUGAUGAGAAACGUGCC&AAAUUGUUUUUCAUUAUUAAG	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN452_c0_g1_1339_TPlot.pdf
TRINITY_DN452_c0_g1:1554	si_a68	TRINITY_DN452_c0_g1	1543	1563	1554	-25.40	-18.30	0.720472440944882	6.5	1-5,1563-1559;7-16,1557-1548;18-21,1546-1543	6-6,1558-1558[SIL];17-17,1547-1547[SIL]	((((.((((((((((.(((((&))))).)))))))))).))))	UGGGCGACAAUUUGGUGGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN452_c0_g1_1554_TPlot.pdf
TRINITY_DN452_c0_g1:1694	si_a645	TRINITY_DN452_c0_g1	1683	1703	1694	-29.40	-20.00	0.680272108843537	6.5	2-18,1702-1686	1-1,1703-1703[UP5];19-21,1685-1683[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GUACUGAUAUAUUAUUCAAGG&UUUUGAGUAAUAUAUCGGGAA	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN452_c0_g1_1694_TPlot.pdf
TRINITY_DN452_c0_g1:1697	si_a642	TRINITY_DN452_c0_g1	1686	1706	1697	-25.90	-21.10	0.814671814671815	6.5	3-21,1704-1686	1-2,1706-1705[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	CUGAUAUAUUAUUCAAGGAUG&UUUUUUUGAGUAAUAUAUCGG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN452_c0_g1_1697_TPlot.pdf
TRINITY_DN452_c0_g1:1699	si_a640	TRINITY_DN452_c0_g1	1688	1708	1699	-24.10	-18.40	0.763485477178423	6.5	1-3,1708-1706;5-21,1704-1688	4-4,1705-1705[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	GAUAUAUUAUUCAAGGAUGUU&GAUUUUUUUGAGUAAUAUAUC	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN452_c0_g1_1699_TPlot.pdf
TRINITY_DN452_c0_g1:3102	si_s80	TRINITY_DN452_c0_g1	3092	3112	3102	-28.20	-18.40	0.652482269503546	4.5	1-9,3112-3104;10-14,3102-3098;16-21,3097-3092	x-x,3103-3103[BULt];15-15,x-x[BULq]	((((((-(((((.(((((((((&)))))))))-))))).))))))	GGAGAA-AAAGGAAAAGAAAGA&UUUUUCUUU-CCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN452_c0_g1_3102_TPlot.pdf
TRINITY_DN452_c0_g1:3106	si_s77	TRINITY_DN452_c0_g1	3092	3115	3106	-25.50	-18.50	0.725490196078431	6.5	1-12,3115-3104;13-16,3102-3099;17-21,3096-3092	x-x,3103-3103[BULt];x-x,3098-3097[BULt]	(((((..((((.((((((((((((&))))))))))))-))))--)))))	GGAGAAAAAGGAAAAGAAAGAAGA&UUUUUUUUCUUU-CCUU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN452_c0_g1_3106_TPlot.pdf
TRINITY_DN452_c0_g1:634	si_s83	TRINITY_DN452_c0_g1	623	643	634	-30.90	-21.30	0.689320388349515	7	1-11,643-633;13-19,631-625	12-12,632-632[SIL];20-21,624-623[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CUGGAAGAGCGAAGGAAAGGA&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN452_c0_g1_634_TPlot.pdf
TRINITY_DN452_c0_g1:635	si_s82	TRINITY_DN452_c0_g1	624	644	635	-28.90	-21.50	0.743944636678201	6	2-12,643-633;14-20,631-625	1-1,644-644[UP5];13-13,632-632[SIL];21-21,624-624[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UGGAAGAGCGAAGGAAAGGAU&UUUCUUUCCUUUCUUCUUCUU	2	0.999998182066353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN452_c0_g1_635_TPlot.pdf
TRINITY_DN452_c0_g1:637	si_s80	TRINITY_DN452_c0_g1	626	646	637	-28.20	-20.40	0.723404255319149	8	4-14,643-633;16-21,631-626	1-3,646-644[UP5];15-15,632-632[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAAGAGCGAAGGAAAGGAUGG&UUUUUCUUUCCUUUCUUCUUC	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN452_c0_g1_637_TPlot.pdf
TRINITY_DN452_c0_g1:638	si_s79	TRINITY_DN452_c0_g1	624	647	638	-26.20	-17.30	0.66030534351145	12.5	5-14,643-634;15-20,630-625	1-4,647-644[UP5];x-x,633-631[BULt];21-21,624-624[UP3]	.((((((...((((((((((....&....))))))))))---)))))).	UGGAAGAGCGAAGGAAAGGAUGGU&UUUUUUCUUUCCUU---UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN452_c0_g1_638_TPlot.pdf
TRINITY_DN452_c0_g1:733	si_a576	TRINITY_DN452_c0_g1	721	746	733	-28.70	-19.00	0.662020905923345	12	1-4,746-743;5-13,738-730;14-20,728-722	x-x,742-739[BULt];x-x,729-729[BULt];21-21,721-721[UP3]	.(((((((.(((((((((....((((&))))----)))))))))-))))))).	AUCUUGUUAACAGACAUGGAGCCGAU&AUCG----UAUGUUUGU-AACAAGAA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN452_c0_g1_733_TPlot.pdf
TRINITY_DN452_c0_g1:734	si_a575	TRINITY_DN452_c0_g1	722	747	734	-28.60	-19.10	0.667832167832168	12	2-5,746-743;6-14,738-730;15-21,728-722	1-1,747-747[UP5];x-x,742-739[BULt];x-x,729-729[BULt]	(((((((.(((((((((....((((.&.))))----)))))))))-)))))))	UCUUGUUAACAGACAUGGAGCCGAUG&AAUCG----UAUGUUUGU-AACAAGA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN452_c0_g1_734_TPlot.pdf
TRINITY_DN4530_c0_g1:1129	si_a358	TRINITY_DN4530_c0_g1	1118	1138	1129	-29.10	-19.10	0.656357388316151	9	1-11,1138-1128;14-20,1125-1119	12-13,1127-1126[SIL];21-21,1118-1118[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	GGAUCUGGAGGAGAUGGAGUU&AAUUCUAUUUUGAUCGGAUCA	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN4530_c0_g1_1129_TPlot.pdf
TRINITY_DN4530_c0_g1:1130	si_a357	TRINITY_DN4530_c0_g1	1119	1139	1130	-28.80	-19.50	0.677083333333333	7.5	1-12,1139-1128;15-21,1125-1119	13-14,1127-1126[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAUCUGGAGGAGAUGGAGUUG&UAAUUCUAUUUUGAUCGGAUC	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN4530_c0_g1_1130_TPlot.pdf
TRINITY_DN4530_c0_g1:1187	si_s71	TRINITY_DN4530_c0_g1	1176	1196	1187	-25.70	-17.40	0.67704280155642	9.5	1-1,1196-1196;3-19,1194-1178	2-2,1195-1195[SIL];20-21,1177-1176[UP3]	..(((((((((((((((((.(&).)))))))))))))))))..	CUGAAGGGGAAGGAGUGGAUG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4530_c0_g1_1187_TPlot.pdf
TRINITY_DN4530_c0_g1:1188	si_s84	TRINITY_DN4530_c0_g1	1177	1198	1188	-32.30	-23.00	0.712074303405573	8.5	1-3,1198-1196;5-7,1194-1192;8-21,1190-1177	4-4,1195-1195[SIL];x-x,1191-1191[BULt]	((((((((((((((.(((.(((&))).)))-))))))))))))))	UGAAGGGGAAGGAGUGGAUGGA&UCUUUCC-UUUCUUCUUCUUCG	2	0.999992104080873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4530_c0_g1_1188_TPlot.pdf
TRINITY_DN4530_c0_g1:1189	si_s74	TRINITY_DN4530_c0_g1	1178	1197	1189	-25.00	-19.30	0.772	10	1-6,1197-1192;9-21,1190-1178	7-8,1191-1191[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GAAGGGGAAGGAGU-GGAUGG&CUAUUUUUUUUCUUUCCUUUC	3	0.999889416257926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4530_c0_g1_1189_TPlot.pdf
TRINITY_DN4530_c0_g1:1191	si_s72	TRINITY_DN4530_c0_g1	1180	1199	1191	-24.10	-17.70	0.734439834024896	9.5	1-8,1199-1192;11-21,1190-1180	9-10,1191-1191[AILq]	(((((((((((.-((((((((&))))))))..)))))))))))	AGGGGAAGGAGU-GGAUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4530_c0_g1_1191_TPlot.pdf
TRINITY_DN4530_c0_g1:1369	si_s83	TRINITY_DN4530_c0_g1	1358	1379	1369	-30.90	-26.30	0.851132686084142	6	1-7,1379-1373;8-21,1371-1358	x-x,1372-1372[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	GGAGAAGGAGGAAGCGGAGGAA&UUCUUUC-CUUUCUUCUUCUUC	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4530_c0_g1_1369_TPlot.pdf
TRINITY_DN4530_c0_g1:1387	si_a785	TRINITY_DN4530_c0_g1	1376	1397	1387	-25.90	-17.12	0.661003861003861	11	1-8,1397-1390;12-16,1385-1381;18-21,1379-1376	9-11,1389-1386[AILt];17-17,1380-1380[SIL]	((((.(((((....((((((((&))))))))-...))))).))))	GGAAUUGGAAUUAUUAGAGGAG&CUCUUCUA-UUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4530_c0_g1_1387_TPlot.pdf
TRINITY_DN4530_c0_g1:1403	si_a326	TRINITY_DN4530_c0_g1	1392	1414	1403	-26.20	-19.00	0.725190839694656	9.5	2-6,1413-1409;7-18,1406-1395;20-21,1393-1392	1-1,1414-1414[UP5];x-x,1408-1407[BULt];19-19,1394-1394[SIL]	((.((((((((((((..(((((.&.)))))--)))))))))))).))	GAGGAGGAAUAAGAAUAGGUCAA&AUGAUU--UUUUUAUUCCUUGUC	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4530_c0_g1_1403_TPlot.pdf
TRINITY_DN4530_c0_g1:1475	si_s898	TRINITY_DN4530_c0_g1	1464	1484	1475	-30.70	-22.60	0.736156351791531	5.5	2-12,1483-1473;14-19,1471-1466	1-1,1484-1484[UP5];13-13,1472-1472[SIL];20-21,1465-1464[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	ACUGGAAUGGAAGAGGAAGCA&GGCUUUCUCUUCAAUUUCAAU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4530_c0_g1_1475_TPlot.pdf
TRINITY_DN4530_c0_g1:1477	si_s896	TRINITY_DN4530_c0_g1	1466	1486	1477	-31.60	-22.30	0.705696202531646	7.5	4-14,1483-1473;16-21,1471-1466	1-3,1486-1484[UP5];15-15,1472-1472[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UGGAAUGGAAGAGGAAGCAGA&UAGGCUUUCUCUUCAAUUUCA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4530_c0_g1_1477_TPlot.pdf
TRINITY_DN4530_c0_g1:1614	si_s88	TRINITY_DN4530_c0_g1	1605	1623	1614	-34.80	-23.40	0.672413793103448	4.5	1-14,1623-1610;17-20,1609-1606	15-16,x-x[BULq];21-21,1605-1605[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	UAGGC--AGAAGAAGAAGGGA&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999999906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4530_c0_g1_1614_TPlot.pdf
TRINITY_DN4530_c0_g1:1615	si_s87	TRINITY_DN4530_c0_g1	1606	1624	1615	-32.90	-23.50	0.714285714285714	4.5	2-15,1623-1610;18-21,1609-1606	1-1,1624-1624[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	AGGC--AGAAGAAGAAGGGAC&UUCCUUUCUUCUUCUUCGCUU	2	0.999985103896774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4530_c0_g1_1615_TPlot.pdf
TRINITY_DN4530_c0_g1:1616	si_s86	TRINITY_DN4530_c0_g1	1607	1625	1616	-32.90	-22.90	0.696048632218845	6.5	3-16,1623-1610;19-21,1609-1607	1-2,1625-1624[UP5];17-18,x-x[BULq]	(((--((((((((((((((..&..))))))))))))))..)))	GGC--AGAAGAAGAAGGGACU&UUUCCUUUCUUCUUCUUCGCU	2	0.999999889493727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4530_c0_g1_1616_TPlot.pdf
TRINITY_DN4530_c0_g1:1618	si_s84	TRINITY_DN4530_c0_g1	1606	1627	1618	-32.30	-21.10	0.653250773993808	10.5	5-18,1623-1610;19-20,1608-1607	1-4,1627-1624[UP5];x-x,1609-1609[BULt];21-21,1606-1606[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	AGGCAGAAGAAGAAGGGACUCA&UCUUUCCUUUCUUCUUCU-UCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4530_c0_g1_1618_TPlot.pdf
TRINITY_DN4530_c0_g1:1619	si_s83	TRINITY_DN4530_c0_g1	1608	1628	1619	-30.90	-20.80	0.673139158576052	12	6-19,1623-1610	1-5,1628-1624[UP5];20-21,1609-1608[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCAGAAGAAGAAGGGACUCAU&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4530_c0_g1_1619_TPlot.pdf
TRINITY_DN4530_c0_g1:3424	si_s316	TRINITY_DN4530_c0_g1	3413	3433	3424	-31.50	-20.90	0.663492063492063	9.5	1-4,3433-3430;6-13,3428-3421;15-18,3419-3416	5-5,3429-3429[SIL];14-14,3420-3420[SIL];19-21,3415-3413[UP3]	...((((.((((((((.((((&)))).)))))))).))))...	GUGGUAGGAGGAAGGGGAGGA&UUCUGUCCUUCUUGUUACAAA	4	0.999996152107084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN4530_c0_g1_3424_TPlot.pdf
TRINITY_DN4530_c0_g1:3428	si_s80	TRINITY_DN4530_c0_g1	3417	3437	3428	-28.20	-23.10	0.819148936170213	9	3-20,3435-3418	1-2,3437-3436[UP5];21-21,3417-3417[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UAGGAGGAAGGGGAGGAGAUG&UUUUUCUUUCCUUUCUUCUUC	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4530_c0_g1_3428_TPlot.pdf
TRINITY_DN4530_c0_g1:3429	si_s74	TRINITY_DN4530_c0_g1	3418	3438	3429	-25.00	-22.20	0.888	8.5	1-20,3438-3419	21-21,3418-3418[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AGGAGGAAGGGGAGGAGAUGG&CUAUUUUUUUUCUUUCCUUUC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4530_c0_g1_3429_TPlot.pdf
TRINITY_DN4530_c0_g1:3433	si_s70	TRINITY_DN4530_c0_g1	3422	3442	3433	-25.80	-20.60	0.798449612403101	10.5	4-21,3439-3422	1-3,3442-3440[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGAAGGGGAGGAGAUGGACUU&ACUUCUAUUUUUUUUCUUUCC	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4530_c0_g1_3433_TPlot.pdf
TRINITY_DN4530_c0_g1:375	si_a787	TRINITY_DN4530_c0_g1	364	387	375	-26.30	-17.28	0.657034220532319	17.5	1-6,387-382;11-21,374-364	7-10,381-375[AILt]	(((((((((((.......((((((&))))))---....)))))))))))	UGGAAAAUGGGUGAUACUUGGAGG&CUUCUA---UUUUUCUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4530_c0_g1_375_TPlot.pdf
TRINITY_DN4530_c0_g1:646	si_s90	TRINITY_DN4530_c0_g1	636	655	646	-35.30	-23.10	0.654390934844193	8	1-6,655-650;8-13,648-643;15-21,642-636	7-7,649-649[SIL];14-14,x-x[BULq]	(((((((-((((((.((((((&)))))).)))))).)))))))	CUGGAGC-AGGAAGCGGAGGG&CUUUCUUCUUCUUCGCUUCGG	2	0.999999999979148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4530_c0_g1_646_TPlot.pdf
TRINITY_DN4530_c0_g1:648	si_s88	TRINITY_DN4530_c0_g1	638	657	648	-34.80	-23.70	0.681034482758621	7	1-8,657-650;10-15,648-643;17-21,642-638	9-9,649-649[SIL];16-16,x-x[BULq]	(((((-((((((.((((((((&)))))))).)))))).)))))	GGAGC-AGGAAGCGGAGGGGA&UCCUUUCUUCUUCUUCGCUUC	3	0.999999999990747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4530_c0_g1_648_TPlot.pdf
TRINITY_DN4530_c0_g1:767	si_s88	TRINITY_DN4530_c0_g1	756	776	767	-34.80	-23.30	0.669540229885058	7.5	1-9,776-768;11-19,766-758;21-21,756-756	10-10,767-767[SIL];20-20,757-757[SIL]	(.(((((((((.(((((((((&))))))))).))))))))).)	GUGGCGGAGGAAAAGGAGGGG&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4530_c0_g1_767_TPlot.pdf
TRINITY_DN4530_c0_g1:769	si_s86	TRINITY_DN4530_c0_g1	758	778	769	-32.90	-23.00	0.699088145896657	9.5	3-11,776-768;13-21,766-758	1-2,778-777[UP5];12-12,767-767[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GGCGGAGGAAAAGGAGGGGUU&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999945646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4530_c0_g1_769_TPlot.pdf
TRINITY_DN4530_c0_g1:772	si_a780	TRINITY_DN4530_c0_g1	762	781	772	-27.30	-20.00	0.732600732600733	6.5	1-12,781-770;14-20,769-763	13-13,x-x[BULq];21-21,762-762[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	GAGGAAAA-GGAGGGGUUGGA&UUCAACUCUUCUAUUUUUCUA	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN4530_c0_g1_772_TPlot.pdf
TRINITY_DN4530_c0_g1:773	si_a779	TRINITY_DN4530_c0_g1	763	782	773	-27.00	-19.60	0.725925925925926	6	2-13,781-770;15-21,769-763	1-1,782-782[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	AGGAAAA-GGAGGGGUUGGAG&AUUCAACUCUUCUAUUUUUCU	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN4530_c0_g1_773_TPlot.pdf
TRINITY_DN4530_c0_g1:784	si_a791	TRINITY_DN4530_c0_g1	774	793	784	-26.50	-18.00	0.679245283018868	9	1-3,793-791;6-10,788-784;13-21,782-774	4-5,790-789[SIL];11-12,783-783[AILq]	(((((((((.-(((((..(((&)))..)))))..)))))))))	GGGUUGGAGU-UAGAAUUAUA&UAUUUUUCUAUUUUCCAAUCC	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN4530_c0_g1_784_TPlot.pdf
TRINITY_DN4530_c0_g1:785	si_a790	TRINITY_DN4530_c0_g1	775	794	785	-25.80	-17.60	0.682170542635659	8	1-4,794-791;7-11,788-784;14-21,782-775	5-6,790-789[SIL];12-13,783-783[AILq]	((((((((.-(((((..((((&))))..)))))..))))))))	GGUUGGAGU-UAGAAUUAUAG&CUAUUUUUCUAUUUUCCAAUC	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4530_c0_g1_785_TPlot.pdf
TRINITY_DN4530_c0_g1:910	si_a788	TRINITY_DN4530_c0_g1	899	919	910	-24.80	-17.70	0.713709677419355	8.5	3-18,917-902	1-2,919-918[UP5];19-21,901-899[UP3]	...((((((((((((((((..&..))))))))))))))))...	AACGAAGAUGGAGAAAUAGUA&UUCUAUUUUUCUAUUUUCCAA	2	0.998987331601569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN4530_c0_g1_910_TPlot.pdf
TRINITY_DN4530_c0_g1:913	si_a785	TRINITY_DN4530_c0_g1	902	922	913	-25.90	-17.70	0.683397683397683	11	6-21,917-902	1-5,922-918[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGAUGGAGAAAUAGUAAUA&CUCUUCUAUUUUUCUAUUUUC	2	0.99999998270191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4530_c0_g1_913_TPlot.pdf
TRINITY_DN4530_c0_g1:923	si_s7	TRINITY_DN4530_c0_g1	912	932	923	-21.70	-14.60	0.672811059907834	7	3-7,930-926;9-19,924-914	1-2,932-931[UP5];8-8,925-925[SIL];20-21,913-912[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	AAAUAGUAAUAAUCAGUAAGA&UAUUACUUAUUAUUACUAUAU	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN4530_c0_g1_923_TPlot.pdf
TRINITY_DN4530_c0_g1:971	si_a354	TRINITY_DN4530_c0_g1	960	980	971	-26.20	-18.60	0.709923664122137	5.5	1-11,980-970;13-15,968-966;17-20,964-961	12-12,969-969[SIL];16-16,965-965[SIL];21-21,960-960[UP3]	.((((.(((.(((((((((((&))))))))))).))).)))).	GCGAUGGAAUUAGAAUUGAUA&UAUUAAUUCUAUUUUGAUCGG	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN4530_c0_g1_971_TPlot.pdf
TRINITY_DN4530_c1_g1:3141	si_a434	TRINITY_DN4530_c1_g1	3130	3149	3141	-36.40	-24.30	0.667582417582418	7	2-3,3148-3147;5-15,3146-3136;17-20,3134-3131	1-1,3149-3149[UP5];4-4,x-x[BULq];16-16,3135-3135[SIL];21-21,3130-3130[UP3]	.((((.(((((((((((-((.&.)).))))))))))).)))).	UUCUCCUAUCCGAUGGA-CCG&AGGAUCCGUUGGAUAUGAGAU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN4530_c1_g1_3141_TPlot.pdf
TRINITY_DN4530_c2_g1:3035	si_s608	TRINITY_DN4530_c2_g1	3024	3044	3035	-26.70	-19.40	0.726591760299625	6	2-18,3043-3027	1-1,3044-3044[UP5];19-21,3026-3024[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUAGGAUUUAAAAAGGAUUUC&CGAAUCUUUUUUAAAUCCAAG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN4530_c2_g1_3035_TPlot.pdf
TRINITY_DN4530_c2_g1:3038	si_s605	TRINITY_DN4530_c2_g1	3027	3047	3038	-27.50	-18.90	0.687272727272727	9	5-21,3043-3027	1-4,3047-3044[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAUUUAAAAAGGAUUUCAUC&AAGCGAAUCUUUUUUAAAUCC	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN4530_c2_g1_3038_TPlot.pdf
TRINITY_DN4530_c2_g1:3747	si_a159	TRINITY_DN4530_c2_g1	3737	3756	3747	-33.80	-24.50	0.724852071005917	10	5-13,3752-3744;15-21,3743-3737	1-4,3756-3753[UP5];14-14,x-x[BULq]	(((((((-(((((((((....&....))))))))).)))))))	GGGUGGG-AGAUUGGCCAAUA&UUAAGGUCAAUCUAUUCACCC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a159_TRINITY_DN4530_c2_g1_3747_TPlot.pdf
TRINITY_DN4530_c2_g1:4204	si_a836	TRINITY_DN4530_c2_g1	4193	4213	4204	-24.10	-16.20	0.672199170124481	14.5	8-20,4206-4194	1-7,4213-4207[UP5];21-21,4193-4193[UP3]	.(((((((((((((.......&.......))))))))))))).	CUAGCAAUUUCUAUCGAGGUC&AAAAAAAAUAGAAGUUGCUAA	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN4530_c2_g1_4204_TPlot.pdf
TRINITY_DN4530_c2_g2:1051	si_s76	TRINITY_DN4530_c2_g2	1039	1060	1051	-23.60	-16.00	0.677966101694915	10.5	5-18,1056-1043;19-20,1041-1040	1-4,1060-1057[UP5];x-x,1042-1042[BULt];21-21,1039-1039[UP3]	.((.((((((((((((((....&....))))))))))))))-)).	CGGAAAAGGAAAGAAAAGUAUC&AUUUUUUUUCUUUCCUUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4530_c2_g2_1051_TPlot.pdf
TRINITY_DN4530_c2_g2:1052	si_s75	TRINITY_DN4530_c2_g2	1040	1061	1052	-24.00	-16.00	0.666666666666667	11.5	6-19,1056-1043;20-21,1041-1040	1-5,1061-1057[UP5];x-x,1042-1042[BULt]	((.((((((((((((((.....&.....))))))))))))))-))	GGAAAAGGAAAGAAAAGUAUCG&UAUUUUUUUUCUUUCCUUU-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4530_c2_g2_1052_TPlot.pdf
TRINITY_DN45318_c0_g1:263	si_a793	TRINITY_DN45318_c0_g1	252	276	263	-28.50	-19.00	0.666666666666667	15.5	4-9,273-268;10-21,263-252	1-3,276-274[UP5];x-x,267-264[BULt]	((((((((((((....((((((...&...))))))----))))))))))))	UUGGAUUGGAGAUAAUAUAGGACGA&UUUUUCUAU----UUUCCAAUCCGA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN45318_c0_g1_263_TPlot.pdf
TRINITY_DN45318_c0_g1:368	si_a892	TRINITY_DN45318_c0_g1	357	377	368	-21.30	-15.70	0.737089201877934	6	1-9,377-369;11-18,367-360	10-10,368-368[SIL];19-21,359-357[UP3]	...((((((((.(((((((((&))))))))).))))))))...	AGGACUUAUUGCUACUAUAUU&AAUAUAGUAAUAAUAAGUAAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN45318_c0_g1_368_TPlot.pdf
TRINITY_DN45318_c0_g1:370	si_a890	TRINITY_DN45318_c0_g1	359	379	370	-23.80	-15.70	0.659663865546218	6.5	3-11,377-369;13-20,367-360	1-2,379-378[UP5];12-12,368-368[SIL];21-21,359-359[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	GACUUAUUGCUACUAUAUUAA&UCAAUAUAGUAAUAAUAAGUA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN45318_c0_g1_370_TPlot.pdf
TRINITY_DN45318_c0_g1:424	si_a784	TRINITY_DN45318_c0_g1	413	434	424	-24.70	-16.10	0.651821862348178	10	2-6,433-429;7-16,427-418	1-1,434-434[UP5];x-x,428-428[BULt];17-21,417-413[UP3]	.....((((((((((.(((((.&.)))))-)))))))))).....	CUAUGGGAGAAAUAGUAGGAGC&ACUCUU-CUAUUUUUCUAUUUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN45318_c0_g1_424_TPlot.pdf
TRINITY_DN45318_c0_g1:846	si_a142	TRINITY_DN45318_c0_g1	835	857	846	-23.50	-15.80	0.672340425531915	10.5	4-9,854-849;10-21,846-835	1-3,857-855[UP5];x-x,848-847[BULt]	((((((((((((..((((((...&...))))))--))))))))))))	UUAAAGCAACAAUUCGGUUAUAC&AAUUAAUCG--UUGUUGUUUUAA	4	0.999999999998649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN45318_c0_g1_846_TPlot.pdf
TRINITY_DN4534_c0_g1:1466	si_s232	TRINITY_DN4534_c0_g1	1454	1475	1466	-33.20	-21.90	0.659638554216867	5.5	1-11,1475-1465;14-17,1462-1459;18-20,1457-1455	12-13,1464-1463[SIL];x-x,1458-1458[BULt];21-21,1454-1454[UP3]	.(((.((((..(((((((((((&)))))))))))..))))-))).	CCCUCGUUGCCUCCUUAUUCAC&GUGAAUAAGGAAUCAAU-AGGC	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s232_TRINITY_DN4534_c0_g1_1466_TPlot.pdf
TRINITY_DN4534_c0_g1:1467	si_s231	TRINITY_DN4534_c0_g1	1455	1476	1467	-32.20	-22.00	0.683229813664596	4.5	2-12,1475-1465;15-18,1462-1459;19-21,1457-1455	1-1,1476-1476[UP5];13-14,1464-1463[SIL];x-x,1458-1458[BULt]	(((.((((..(((((((((((.&.)))))))))))..))))-)))	CCUCGUUGCCUCCUUAUUCACA&CGUGAAUAAGGAAUCAAU-AGG	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s231_TRINITY_DN4534_c0_g1_1467_TPlot.pdf
TRINITY_DN4534_c0_g1:795	si_s85	TRINITY_DN4534_c0_g1	784	805	795	-33.80	-23.80	0.70414201183432	5.5	2-6,804-800;7-20,798-785	1-1,805-805[UP5];x-x,799-799[BULt];21-21,784-784[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	AUGAAGAAGAAGAAACGGAAGA&CUUUCC-UUUCUUCUUCUUCGC	4	0.999999942932217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4534_c0_g1_795_TPlot.pdf
TRINITY_DN45350_c0_g1:487	si_a791	TRINITY_DN45350_c0_g1	465	496	487	-26.50	-17.90	0.675471698113208	14	1-15,496-482;16-21,470-465	x-x,481-471[BULt]	((((((...........(((((((((((((((&)))))))))))))))-----------))))))	GGAUUGCUAAAGUUGAAGAAAGUGGAAAAGUA&UAUUUUUCUAUUUUC-----------CAAUCC	4	0.999994185394833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN45350_c0_g1_487_TPlot.pdf
TRINITY_DN45359_c0_g1:1081	si_a435	TRINITY_DN45359_c0_g1	1070	1090	1081	-36.10	-24.28	0.672576177285319	8	1-11,1090-1080;15-18,1076-1073	12-14,1079-1077[SIL];19-21,1072-1070[UP3]	...((((...(((((((((((&)))))))))))...))))...	UCCCUCAGCGCCAACGGAUUC&GGAUCCGUUGGAUAUGAGAUA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a435_TRINITY_DN45359_c0_g1_1081_TPlot.pdf
TRINITY_DN45359_c0_g1:1082	si_a434	TRINITY_DN45359_c0_g1	1071	1091	1082	-36.40	-25.38	0.697252747252747	6	1-12,1091-1080;16-19,1076-1073	13-15,1079-1077[SIL];20-21,1072-1071[UP3]	..((((...((((((((((((&))))))))))))...))))..	CCCUCAGCGCCAACGGAUUCU&AGGAUCCGUUGGAUAUGAGAU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN45359_c0_g1_1082_TPlot.pdf
TRINITY_DN45359_c0_g1:1091	si_a425	TRINITY_DN45359_c0_g1	1080	1105	1091	-30.80	-21.30	0.691558441558442	16	1-7,1105-1099;10-21,1091-1080	8-9,1098-1092[AILt]	((((((((((((.......(((((((&)))))))-----..))))))))))))	CCAACGGAUUCUUCAUCCGAUUUGUU&AAUAAAU-----AUAGGAUCCGUUGG	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN45359_c0_g1_1091_TPlot.pdf
TRINITY_DN4536_c0_g1:3058	si_a410	TRINITY_DN4536_c0_g1	3047	3067	3058	-17.80	-12.70	0.713483146067416	8	1-15,3067-3053	16-21,3052-3047[UP3]	......(((((((((((((((&)))))))))))))))......	UCAACGUAAGUAUAAACGAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4536_c0_g1_3058_TPlot.pdf
TRINITY_DN4536_c0_g1:3061	si_a407	TRINITY_DN4536_c0_g1	3050	3070	3061	-19.80	-14.00	0.707070707070707	8.5	3-18,3068-3053	1-2,3070-3069[UP5];19-21,3052-3050[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACGUAAGUAUAAACGAAAUUU&UUGUUUUGUUUAUAUUUAAAU	4	0.999999990910955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4536_c0_g1_3061_TPlot.pdf
TRINITY_DN4536_c0_g1:3064	si_a404	TRINITY_DN4536_c0_g1	3053	3075	3064	-21.70	-14.36	0.661751152073733	12.5	1-2,3075-3074;6-21,3068-3053	3-5,3073-3069[AILt]	((((((((((((((((.....((&))--...))))))))))))))))	UAAGUAUAAACGAAAUUUUGGUC&GA--AUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4536_c0_g1_3064_TPlot.pdf
TRINITY_DN4536_c0_g1:4030	si_s191	TRINITY_DN4536_c0_g1	4019	4039	4030	-26.60	-19.60	0.736842105263158	9.5	4-11,4036-4029;13-21,4027-4019	1-3,4039-4037[UP5];12-12,4028-4028[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UGCAUUCCAUAGUAAUUGGAU&UAACGAUUAUUUUGGAAUGUA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN4536_c0_g1_4030_TPlot.pdf
TRINITY_DN4536_c0_g1:4031	si_s190	TRINITY_DN4536_c0_g1	4020	4040	4031	-28.00	-18.40	0.657142857142857	10.5	5-12,4036-4029;14-21,4027-4020	1-4,4040-4037[UP5];13-13,4028-4028[SIL]	((((((((.((((((((....&....)))))))).))))))))	GCAUUCCAUAGUAAUUGGAUA&GUAACGAUUAUUUUGGAAUGU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN4536_c0_g1_4031_TPlot.pdf
TRINITY_DN4536_c0_g1:4084	si_a413	TRINITY_DN4536_c0_g1	4073	4093	4084	-18.40	-12.10	0.657608695652174	9.5	3-18,4091-4076	1-2,4093-4092[UP5];19-21,4075-4073[UP3]	...((((((((((((((((..&..))))))))))))))))...	AACUUUGUUUGAAUAUGAGAA&UGUUUAUAUUUAAAUAAAUAU	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN4536_c0_g1_4084_TPlot.pdf
TRINITY_DN4536_c0_g1:4085	si_a412	TRINITY_DN4536_c0_g1	4074	4094	4085	-18.30	-12.10	0.66120218579235	10.5	4-19,4091-4076	1-3,4094-4092[UP5];20-21,4075-4074[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUUUGUUUGAAUAUGAGAAG&UUGUUUAUAUUUAAAUAAAUA	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN4536_c0_g1_4085_TPlot.pdf
TRINITY_DN4536_c0_g1:4087	si_a410	TRINITY_DN4536_c0_g1	4076	4096	4087	-17.80	-12.00	0.674157303370786	12	6-21,4091-4076	1-5,4096-4092[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUGUUUGAAUAUGAGAAGCC&UUUUGUUUAUAUUUAAAUAAA	2	0.999999897445394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4536_c0_g1_4087_TPlot.pdf
TRINITY_DN4536_c0_g1:92	si_a790	TRINITY_DN4536_c0_g1	74	101	92	-25.80	-17.00	0.65891472868217	15	1-11,101-91;12-18,84-78;19-21,76-74	x-x,90-85[BULt];x-x,77-77[BULt]	(((.(((((((......(((((((((((&)))))))))))------)))))))-)))	GAUGUGGAAAGAUAUACUGGAAAAAUAG&CUAUUUUUCUA------UUUUCCA-AUC	4	0.999999967315661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4536_c0_g1_92_TPlot.pdf
TRINITY_DN4536_c0_g1:93	si_a789	TRINITY_DN4536_c0_g1	76	102	93	-24.80	-17.30	0.69758064516129	15.5	1-12,102-91;13-19,84-78	x-x,90-85[BULt];20-21,77-76[UP3]	..(((((((......((((((((((((&))))))))))))------)))))))..	UGUGGAAAGAUAUACUGGAAAAAUAGA&UCUAUUUUUCUA------UUUUCCAAU	4	0.999998861596865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN4536_c0_g1_93_TPlot.pdf
TRINITY_DN4536_c0_g1:96	si_s70	TRINITY_DN4536_c0_g1	79	105	96	-25.80	-17.00	0.65891472868217	10	3-14,103-92;15-21,85-79	1-2,105-104[UP5];x-x,91-86[BULt]	(((((((......((((((((((((..&..))))))))))))------)))))))	GGAAAGAUAUACUGGAAAAAUAGAAAA&ACUUCUAUUUUUUU------UCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4536_c0_g1_96_TPlot.pdf
TRINITY_DN453_c0_g1:2039	si_s876	TRINITY_DN453_c0_g1	2028	2047	2039	-24.20	-17.10	0.706611570247934	8	1-8,2047-2040;10-17,2039-2032	9-9,x-x[BULq];18-21,2031-2028[UP3]	....((((((((-((((((((&)))))))).))))))))....	AUUGAUUUUUAG-UCUGGGAC&GUCUUAGAACUAAAAAUAAAU	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN453_c0_g1_2039_TPlot.pdf
TRINITY_DN453_c0_g1:2203	si_a74	TRINITY_DN453_c0_g1	2192	2212	2203	-22.20	-14.50	0.653153153153153	9	1-14,2212-2199	15-21,2198-2192[UP3]	.......((((((((((((((&)))))))))))))).......	UUGUUAAGAGAAAUAAUUUGA&UCAAAUUGUUUUUCAUUAUUA	2	0.99999987943424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN453_c0_g1_2203_TPlot.pdf
TRINITY_DN453_c0_g1:2204	si_a73	TRINITY_DN453_c0_g1	2193	2213	2204	-21.90	-15.40	0.703196347031964	7.5	1-15,2213-2199	16-21,2198-2193[UP3]	......(((((((((((((((&)))))))))))))))......	UGUUAAGAGAAAUAAUUUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN453_c0_g1_2204_TPlot.pdf
TRINITY_DN453_c0_g1:2205	si_a72	TRINITY_DN453_c0_g1	2194	2214	2205	-21.90	-16.30	0.744292237442922	6.5	1-16,2214-2199	17-21,2198-2194[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUUAAGAGAAAUAAUUUGAAA&UUUCAAAUUGUUUUUCAUUAU	2	0.986849030460239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN453_c0_g1_2205_TPlot.pdf
TRINITY_DN453_c0_g1:2206	si_a71	TRINITY_DN453_c0_g1	2195	2215	2206	-23.30	-16.50	0.708154506437768	6.5	2-17,2214-2199	1-1,2215-2215[UP5];18-21,2198-2195[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUAAGAGAAAUAAUUUGAAAA&CUUUCAAAUUGUUUUUCAUUA	2	0.998717173747751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN453_c0_g1_2206_TPlot.pdf
TRINITY_DN453_c0_g1:2207	si_a70	TRINITY_DN453_c0_g1	2196	2216	2207	-23.90	-16.50	0.690376569037657	7.5	3-18,2214-2199	1-2,2216-2215[UP5];19-21,2198-2196[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAAGAGAAAUAAUUUGAAAAG&UCUUUCAAAUUGUUUUUCAUU	4	0.999999757935342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN453_c0_g1_2207_TPlot.pdf
TRINITY_DN453_c0_g1:426	si_s72	TRINITY_DN453_c0_g1	415	435	426	-24.10	-16.20	0.672199170124481	7.5	1-9,435-427;12-18,424-418	10-11,426-425[SIL];19-21,417-415[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	UCAGAAGGAAUUAAAAUAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN453_c0_g1_426_TPlot.pdf
TRINITY_DN453_c0_g1:429	si_s69	TRINITY_DN453_c0_g1	418	438	429	-23.40	-16.40	0.700854700854701	7.5	4-12,435-427;15-21,424-418	1-3,438-436[UP5];13-14,426-425[SIL]	(((((((..(((((((((...&...)))))))))..)))))))	GAAGGAAUUAAAAUAGAAAGA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN453_c0_g1_429_TPlot.pdf
TRINITY_DN45424_c0_g1:784	si_a141	TRINITY_DN45424_c0_g1	773	793	784	-23.80	-15.80	0.663865546218487	7	1-5,793-789;7-18,787-776	6-6,788-788[SIL];19-21,775-773[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AAUAACAACGAUGAUAAAUUA&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999998374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN45424_c0_g1_784_TPlot.pdf
TRINITY_DN45429_c0_g1:262	si_a762	TRINITY_DN45429_c0_g1	251	271	262	-29.70	-19.70	0.663299663299663	4.5	2-12,270-260;14-20,258-252	1-1,271-271[UP5];13-13,259-259[SIL];21-21,251-251[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	AAAUUAAUGAAAAACCCAGAC&CUUUGGGUUUUUGAUUGAUUC	3	0.999999970199631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN45429_c0_g1_262_TPlot.pdf
TRINITY_DN45429_c0_g1:263	si_a761	TRINITY_DN45429_c0_g1	252	272	263	-30.10	-19.70	0.654485049833887	5.5	3-13,270-260;15-21,258-252	1-2,272-271[UP5];14-14,259-259[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAUUAAUGAAAAACCCAGACA&CCUUUGGGUUUUUGAUUGAUU	2	0.999999482818051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN45429_c0_g1_263_TPlot.pdf
TRINITY_DN4542_c0_g1:4590	si_s605	TRINITY_DN4542_c0_g1	4579	4598	4590	-27.50	-19.20	0.698181818181818	5.5	2-4,4597-4595;6-21,4594-4579	1-1,4598-4598[UP5];5-5,x-x[BULq]	((((((((((((((((-(((.&.))).))))))))))))))))	GGAUUUGAAAAAGGUU-GUUA&AAGCGAAUCUUUUUUAAAUCC	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN4542_c0_g1_4590_TPlot.pdf
TRINITY_DN4542_c0_g1:4662	si_a785	TRINITY_DN4542_c0_g1	4651	4674	4662	-25.90	-18.50	0.714285714285714	10	2-7,4673-4668;8-21,4664-4651	1-1,4674-4674[UP5];x-x,4667-4665[BULt]	((((((((((((((...((((((.&.))))))---))))))))))))))	GGAGGUGGAAGAAUACGAGAAGAC&CUCUUCU---AUUUUUCUAUUUUC	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4542_c0_g1_4662_TPlot.pdf
TRINITY_DN4542_c0_g1:4663	si_a784	TRINITY_DN4542_c0_g1	4652	4675	4663	-24.70	-16.10	0.651821862348178	12	3-8,4673-4668;9-21,4664-4652	1-2,4675-4674[UP5];x-x,4667-4665[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	GAGGUGGAAGAAUACGAGAAGACU&ACUCUUCU---AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4542_c0_g1_4663_TPlot.pdf
TRINITY_DN4542_c0_g1:5474	si_a141	TRINITY_DN4542_c0_g1	5463	5483	5474	-23.80	-15.60	0.65546218487395	12.5	6-20,5478-5464	1-5,5483-5479[UP5];21-21,5463-5463[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAAGACGAUGACGAUUUUAUA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999996816695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN4542_c0_g1_5474_TPlot.pdf
TRINITY_DN4542_c1_g1:461	si_s772	TRINITY_DN4542_c1_g1	450	470	461	-23.20	-15.10	0.650862068965517	15	8-19,463-452	1-7,470-464[UP5];20-21,451-450[UP3]	..((((((((((((.......&.......))))))))))))..	AAUAUAGCAAUAGUCCGCAAU&AUUAAUUACUAUUGCUAUAAA	2	0.99997154569721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN4542_c1_g1_461_TPlot.pdf
TRINITY_DN4543_c0_g1:884	si_a761	TRINITY_DN4543_c0_g1	872	893	884	-30.10	-19.60	0.651162790697674	7.5	1-13,893-881;15-19,878-874	14-14,880-879[AILt];20-21,873-872[UP3]	..(((((..(((((((((((((&)))))))))))))-.)))))..	UCUCGAUGAAGGAACCUAAAGG&CCUUUGGGUUUUU-GAUUGAUU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4543_c0_g1_884_TPlot.pdf
TRINITY_DN4543_c0_g2:174	si_a222	TRINITY_DN4543_c0_g2	163	183	174	-25.20	-19.08	0.757142857142857	4.5	1-11,183-173;15-21,169-163	12-14,172-170[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	AUUGUAGUAUCAUGAGUUUAA&UUAAACUCAUGUUUCUAUAAU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN4543_c0_g2_174_TPlot.pdf
TRINITY_DN4545_c0_g1:775	si_s692	TRINITY_DN4545_c0_g1	764	786	775	-24.20	-16.40	0.677685950413223	10	3-7,784-780;8-21,777-764	1-2,786-785[UP5];x-x,779-778[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	GAUAAGUCGGCUGAAUUUAAAGA&AGUUUAA--UUAGUCGAUUUAUU	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN4545_c0_g1_775_TPlot.pdf
TRINITY_DN4545_c0_g1:949	si_a478	TRINITY_DN4545_c0_g1	938	958	949	-21.30	-16.70	0.784037558685446	4.5	1-12,958-947;14-19,945-940	13-13,946-946[SIL];20-21,939-938[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	UAGUUCUAAAUAGCAAUAAUU&AAUUAUUGUUAUAUAGAAUAU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN4545_c0_g1_949_TPlot.pdf
TRINITY_DN4545_c0_g1:956	si_a471	TRINITY_DN4545_c0_g1	945	965	956	-21.10	-14.00	0.663507109004739	10.5	5-19,961-947	1-4,965-962[UP5];20-21,946-945[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAUAGCAAUAAUUAUACCUA&AAUAUGUAAUUAUUGUUAUAU	4	0.999999708515712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN4545_c0_g1_956_TPlot.pdf
TRINITY_DN4547_c0_g1:1305	si_a399	TRINITY_DN4547_c0_g1	1292	1314	1305	-22.60	-15.00	0.663716814159292	9	1-10,1314-1305;11-19,1302-1294	x-x,1304-1303[BULt];20-21,1293-1292[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	UGAGGCAAAAUGAAAUUCUGUAU&AUAUAGAAUU--GUUUUGUUUAU	2	0.999993283641452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN4547_c0_g1_1305_TPlot.pdf
TRINITY_DN4547_c0_g1:1306	si_a398	TRINITY_DN4547_c0_g1	1293	1315	1306	-22.40	-15.30	0.683035714285714	9	2-11,1314-1305;12-20,1302-1294	1-1,1315-1315[UP5];x-x,1304-1303[BULt];21-21,1293-1293[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	GAGGCAAAAUGAAAUUCUGUAUG&AAUAUAGAAUU--GUUUUGUUUA	4	0.999998884855311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4547_c0_g1_1306_TPlot.pdf
TRINITY_DN4548_c1_g1:1632	si_a793	TRINITY_DN4548_c1_g1	1621	1641	1632	-28.50	-19.30	0.67719298245614	13.5	6-19,1636-1623	1-5,1641-1637[UP5];20-21,1622-1621[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAGGGUUGGGAAAUGGUGCGC&UUUUUCUAUUUUCCAAUCCGA	2	0.991598299488682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN4548_c1_g1_1632_TPlot.pdf
TRINITY_DN4548_c1_g1:1633	si_a792	TRINITY_DN4548_c1_g1	1622	1642	1633	-27.60	-19.30	0.699275362318841	14	7-20,1636-1623	1-6,1642-1637[UP5];21-21,1622-1622[UP3]	.((((((((((((((......&......)))))))))))))).	AGGGUUGGGAAAUGGUGCGCA&AUUUUUCUAUUUUCCAAUCCG	2	0.967779006855436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN4548_c1_g1_1633_TPlot.pdf
TRINITY_DN4548_c1_g1:1634	si_a791	TRINITY_DN4548_c1_g1	1623	1643	1634	-26.50	-18.90	0.713207547169811	15	8-21,1636-1623	1-7,1643-1637[UP5]	((((((((((((((.......&.......))))))))))))))	GGGUUGGGAAAUGGUGCGCAG&UAUUUUUCUAUUUUCCAAUCC	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN4548_c1_g1_1634_TPlot.pdf
TRINITY_DN4548_c1_g1:821	si_s533	TRINITY_DN4548_c1_g1	810	830	821	-28.80	-19.00	0.659722222222222	8	1-8,830-823;10-16,821-815	9-9,822-822[SIL];17-21,814-810[UP3]	.....(((((((.((((((((&)))))))).))))))).....	UUUUCCGGAUCAUAAGUGAUU&AAUCAUUUUUGAUCCGAUCAA	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN4548_c1_g1_821_TPlot.pdf
TRINITY_DN45499_c0_g1:232	si_s76	TRINITY_DN45499_c0_g1	220	245	232	-23.60	-15.40	0.652542372881356	16	1-7,245-239;8-10,234-232;11-21,230-220	x-x,238-235[BULt];x-x,231-231[BULt]	(((((((((((.(((....(((((((&)))))))----)))-)))))))))))	GAGAAAGGGAGCGGAUGCUGAAGAGU&AUUUUUU----UUC-UUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN45499_c0_g1_232_TPlot.pdf
TRINITY_DN45499_c0_g1:41	si_a335	TRINITY_DN45499_c0_g1	25	51	41	-31.10	-20.30	0.652733118971061	11	1-9,51-43;10-13,41-38;14-21,32-25	x-x,42-42[BULt];x-x,37-33[BULt]	((((((((.....((((.(((((((((&)))))))))-))))-----))))))))	UAUUUUCGUUGUAGGACGGGGGAGUGA&UUAUUCCUU-GUCC-----CGAAAAUA	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN45499_c0_g1_41_TPlot.pdf
TRINITY_DN4549_c0_g1:1492	si_a63	TRINITY_DN4549_c0_g1	1481	1501	1492	-30.20	-19.90	0.658940397350993	7	3-15,1499-1487;18-21,1484-1481	1-2,1501-1500[UP5];16-17,1486-1485[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AGCGCCUUGAAAGAAGCGGCU&ACUCGCUUCUUUCAAAUUGUU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN4549_c0_g1_1492_TPlot.pdf
TRINITY_DN4549_c0_g1:1797	si_s74	TRINITY_DN4549_c0_g1	1786	1807	1797	-25.00	-16.50	0.66	9	1-7,1807-1801;10-12,1797-1795;14-21,1793-1786	8-9,1800-1798[AILt];13-13,1794-1794[SIL]	((((((((.(((...(((((((&)))))))-..))).))))))))	GAAGGGGAUGAAUUCAGAAUAG&CUAUUUU-UUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4549_c0_g1_1797_TPlot.pdf
TRINITY_DN4549_c0_g1:3944	si_s173	TRINITY_DN4549_c0_g1	3933	3955	3944	-39.70	-30.08	0.757682619647355	11	1-5,3955-3951;8-19,3946-3935	6-7,3950-3947[AILt];20-21,3934-3933[UP3]	..((((((((((((....(((((&)))))--..))))))))))))..	CGACUCGGGCAUUUAUGGACCCC&GGGGU--AAAGAUGCCCGAGUAA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN4549_c0_g1_3944_TPlot.pdf
TRINITY_DN4549_c0_g1:3945	si_s172	TRINITY_DN4549_c0_g1	3934	3956	3945	-40.30	-31.48	0.781141439205955	10	1-6,3956-3951;9-20,3946-3935	7-8,3950-3947[AILt];21-21,3934-3934[UP3]	.((((((((((((....((((((&))))))--..)))))))))))).	GACUCGGGCAUUUAUGGACCCCU&AGGGGU--AAAGAUGCCCGAGUA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s172_TRINITY_DN4549_c0_g1_3945_TPlot.pdf
TRINITY_DN4549_c0_g1:4467	si_a817	TRINITY_DN4549_c0_g1	4456	4476	4467	-30.90	-22.70	0.73462783171521	5.5	1-16,4476-4461	17-21,4460-4456[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAGGUCUUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN4549_c0_g1_4467_TPlot.pdf
TRINITY_DN4549_c0_g1:4468	si_a816	TRINITY_DN4549_c0_g1	4457	4477	4468	-32.30	-23.10	0.715170278637771	5.5	2-17,4476-4461	1-1,4477-4477[UP5];18-21,4460-4457[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGGUCUUUUCUUCUUCUUCU&CGAAGAAGAAGAAAGGAAAGA	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN4549_c0_g1_4468_TPlot.pdf
TRINITY_DN4549_c0_g1:4471	si_a813	TRINITY_DN4549_c0_g1	4460	4480	4471	-32.90	-23.10	0.702127659574468	8.5	5-20,4476-4461	1-4,4480-4477[UP5];21-21,4460-4460[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUCUUUUCUUCUUCUUCUACC&AAGCGAAGAAGAAGAAAGGAA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN4549_c0_g1_4471_TPlot.pdf
TRINITY_DN4549_c0_g1:4472	si_a812	TRINITY_DN4549_c0_g1	4461	4489	4472	-34.80	-24.00	0.689655172413793	17	1-5,4489-4485;6-21,4476-4461	x-x,4484-4477[BULt]	((((((((((((((((........(((((&)))))--------))))))))))))))))	UCUUUUCUUCUUCUUCUACCUACUGCUUU&GAAGC--------GAAGAAGAAGAAAGGA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN4549_c0_g1_4472_TPlot.pdf
TRINITY_DN4549_c0_g1:4495	si_a84	TRINITY_DN4549_c0_g1	4484	4504	4495	-24.90	-18.10	0.726907630522088	6	3-14,4502-4491;16-21,4489-4484	1-2,4504-4503[UP5];15-15,4490-4490[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UGCUUUCUCUUGAUAAUGACG&UUUCAUUAUUAAGAAAAGGUA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN4549_c0_g1_4495_TPlot.pdf
TRINITY_DN4549_c0_g1:4558	si_s288	TRINITY_DN4549_c0_g1	4543	4568	4558	-35.10	-23.30	0.663817663817664	9.5	2-8,4567-4561;9-13,4559-4555;14-19,4550-4545	1-1,4568-4568[UP5];x-x,4560-4560[BULt];x-x,4554-4551[BULt];20-21,4544-4543[UP3]	..((((((....(((((.(((((((.&.)))))))-)))))----))))))..	UCUUCCAGAAUCUCGACAUAGGCGUC&UACGCCUA-GUCGA----UUGGAAUU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN4549_c0_g1_4558_TPlot.pdf
TRINITY_DN4549_c0_g1:4561	si_s286	TRINITY_DN4549_c0_g1	4545	4570	4561	-35.20	-23.20	0.659090909090909	11.5	4-10,4567-4561;11-15,4559-4555;16-21,4550-4545	1-3,4570-4568[UP5];x-x,4560-4560[BULt];x-x,4554-4551[BULt]	((((((....(((((.(((((((...&...)))))))-)))))----))))))	UUCCAGAAUCUCGACAUAGGCGUCCA&AAUACGCCUA-GUCGA----UUGGAA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN4549_c0_g1_4561_TPlot.pdf
TRINITY_DN4549_c0_g1:4591	si_s71	TRINITY_DN4549_c0_g1	4578	4600	4591	-25.70	-16.80	0.653696498054475	8	1-12,4600-4589;14-15,4587-4586;16-20,4583-4579	13-13,4588-4588[SIL];x-x,4585-4584[BULt];21-21,4578-4578[UP3]	.(((((..((.((((((((((((&)))))))))))).))--))))).	CGGAGGCUGAUGGAAAAUGGAAG&CUUCUAUUUUUUUUC--UUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4549_c0_g1_4591_TPlot.pdf
TRINITY_DN4549_c0_g1:4594	si_a792	TRINITY_DN4549_c0_g1	4578	4603	4594	-27.60	-18.62	0.67463768115942	11	3-16,4601-4588;18-21,4581-4578	1-2,4603-4602[UP5];17-17,4587-4582[AILt]	((((......((((((((((((((..&..))))))))))))))-----.))))	CGGAGGCUGAUGGAAAAUGGAAGAUA&AUUUUUCUAUUUUCCA-----AUCCG	3	0.999930580745155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN4549_c0_g1_4594_TPlot.pdf
TRINITY_DN454_c0_g1:3185	si_s514	TRINITY_DN454_c0_g1	3173	3194	3185	-24.80	-17.60	0.709677419354839	8	1-13,3194-3182;15-18,3179-3176	14-14,3181-3180[AILt];19-21,3175-3173[UP3]	...((((..(((((((((((((&)))))))))))))-.))))...	AUACGAAGCUGAGAGUAUAGGA&UUCUAUAUUCUUA-AUUCGAAA	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN454_c0_g1_3185_TPlot.pdf
TRINITY_DN454_c0_g1:4646	si_a404	TRINITY_DN454_c0_g1	4635	4656	4646	-21.70	-14.20	0.654377880184332	10	1-2,4656-4655;3-16,4653-4640	x-x,4654-4654[BULt];17-21,4639-4635[UP3]	.....((((((((((((((.((&))-)))))))))))))).....	UAGCAAUAAACAGGACGAUAUC&GA-AUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN454_c0_g1_4646_TPlot.pdf
TRINITY_DN454_c0_g1:5311	si_s808	TRINITY_DN454_c0_g1	5299	5320	5311	-28.60	-19.82	0.693006993006993	8.5	1-12,5320-5309;16-19,5304-5301	13-15,5308-5305[AILt];20-21,5300-5299[UP3]	..((((....((((((((((((&))))))))))))-...))))..	ACAAGGUCUUGGUAGCGAAGAU&AUCUUCGUUACC-UUUUCUUAA	4	0.999993940316308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN454_c0_g1_5311_TPlot.pdf
TRINITY_DN454_c0_g1:5312	si_s807	TRINITY_DN454_c0_g1	5300	5321	5312	-28.90	-21.12	0.730795847750865	6.5	1-13,5321-5309;17-20,5304-5301	14-16,5308-5305[AILt];21-21,5300-5300[UP3]	.((((....(((((((((((((&)))))))))))))-...)))).	CAAGGUCUUGGUAGCGAAGAUA&UAUCUUCGUUACC-UUUUCUUA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN454_c0_g1_5312_TPlot.pdf
TRINITY_DN454_c0_g1:5316	si_s803	TRINITY_DN454_c0_g1	5305	5325	5316	-26.00	-21.30	0.819230769230769	8.5	3-17,5323-5309	1-2,5325-5324[UP5];18-21,5308-5305[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCUUGGUAGCGAAGAUAAGCU&AUUUUAUCUUCGUUACCUUUU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN454_c0_g1_5316_TPlot.pdf
TRINITY_DN454_c0_g1:5320	si_s799	TRINITY_DN454_c0_g1	5309	5329	5320	-30.00	-20.90	0.696666666666667	12.5	7-21,5323-5309	1-6,5329-5324[UP5]	(((((((((((((((......&......)))))))))))))))	GGUAGCGAAGAUAAGCUAAUA&UCGUAUUUUAUCUUCGUUACC	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN454_c0_g1_5320_TPlot.pdf
TRINITY_DN454_c0_g1:6396	si_s3	TRINITY_DN454_c0_g1	6385	6404	6396	-21.20	-14.10	0.665094339622642	4.5	1-7,6404-6398;9-13,6397-6393;15-21,6391-6385	8-8,x-x[BULq];14-14,6392-6392[SIL]	(((((((.(((((-(((((((&))))))).))))).)))))))	AGUAAUGUUGAGU-AUAUAAA&UUUAUAUUACUUAUUAUUACU	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN454_c0_g1_6396_TPlot.pdf
TRINITY_DN454_c0_g2:1361	si_s803	TRINITY_DN454_c0_g2	1350	1370	1361	-26.00	-17.70	0.680769230769231	16	8-20,1363-1351	1-7,1370-1364[UP5];21-21,1350-1350[UP3]	.(((((((((((((.......&.......))))))))))))).	UGAAGGUGAUGAAGGAUCGAC&AUUUUAUCUUCGUUACCUUUU	2	0.999995318550385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN454_c0_g2_1361_TPlot.pdf
TRINITY_DN454_c0_g2:1362	si_s802	TRINITY_DN454_c0_g2	1351	1371	1362	-26.40	-17.70	0.670454545454545	16.5	9-21,1363-1351	1-8,1371-1364[UP5]	(((((((((((((........&........)))))))))))))	GAAGGUGAUGAAGGAUCGACC&UAUUUUAUCUUCGUUACCUUU	4	0.999999998106834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN454_c0_g2_1362_TPlot.pdf
TRINITY_DN45503_c0_g1:281	si_a313	TRINITY_DN45503_c0_g1	270	290	281	-28.70	-19.30	0.672473867595819	10.5	1-16,290-275	17-21,274-270[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUGGACGUGGAUGAGUUUGAG&CUUGGAUUUAUCCAUGAUUUU	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN45503_c0_g1_281_TPlot.pdf
TRINITY_DN45505_c0_g1:1005	si_a447	TRINITY_DN45505_c0_g1	994	1014	1005	-25.70	-17.90	0.696498054474708	8	3-15,1012-1000;17-18,998-997	1-2,1014-1013[UP5];16-16,999-999[SIL];19-21,996-994[UP3]	...((.(((((((((((((..&..))))))))))))).))...	AUAAGGGACAAUUAUCUCAAA&UAUGAGAUAAUUGUUGUUAUA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN45505_c0_g1_1005_TPlot.pdf
TRINITY_DN45505_c0_g1:367	si_a20	TRINITY_DN45505_c0_g1	356	374	367	-26.70	-18.10	0.677902621722847	8	1-4,374-371;7-20,370-357	5-6,x-x[BULq];21-21,356-356[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	AGGAACUAAAAAUAG--GGGU&GCCUAUUUAUUUUUAGUUCUA	2	0.998867299997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN45505_c0_g1_367_TPlot.pdf
TRINITY_DN4550_c1_g2:100	si_s76	TRINITY_DN4550_c1_g2	89	109	100	-23.60	-17.60	0.745762711864407	5	2-17,108-93;19-19,91-91	1-1,109-109[UP5];18-18,92-92[SIL];20-21,90-89[UP3]	..(.((((((((((((((((.&.)))))))))))))))).)..	AUGUGGGGAAAGAAAAAAAAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4550_c1_g2_100_TPlot.pdf
TRINITY_DN4550_c1_g2:101	si_s75	TRINITY_DN4550_c1_g2	90	110	101	-24.00	-17.60	0.733333333333333	6	3-18,108-93;20-20,91-91	1-2,110-109[UP5];19-19,92-92[SIL];21-21,90-90[UP3]	.(.((((((((((((((((..&..)))))))))))))))).).	UGUGGGGAAAGAAAAAAAAGA&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4550_c1_g2_101_TPlot.pdf
TRINITY_DN4550_c1_g2:103	si_s73	TRINITY_DN4550_c1_g2	92	112	103	-24.00	-17.10	0.7125	9	5-20,108-93	1-4,112-109[UP5];21-21,92-92[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGGGAAAGAAAAAAAAGAAA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4550_c1_g2_103_TPlot.pdf
TRINITY_DN4550_c1_g2:104	si_s72	TRINITY_DN4550_c1_g2	93	115	104	-24.10	-17.90	0.742738589211618	7	1-4,115-112;6-21,108-93	5-5,111-109[AILt]	((((((((((((((((...((((&))))--.))))))))))))))))	GGGGAAAGAAAAAAAAGAAAGAA&UUCU--AUUUUUUUUCUUUCCUU	3	0.999999998598283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4550_c1_g2_104_TPlot.pdf
TRINITY_DN4550_c1_g2:105	si_s71	TRINITY_DN4550_c1_g2	94	116	105	-25.70	-17.80	0.692607003891051	7.5	2-5,115-112;7-21,108-94	1-1,116-116[UP5];6-6,111-109[AILt]	(((((((((((((((...((((.&.))))--.)))))))))))))))	GGGAAAGAAAAAAAAGAAAGAAA&CUUCU--AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4550_c1_g2_105_TPlot.pdf
TRINITY_DN45520_c0_g1:935	si_s72	TRINITY_DN45520_c0_g1	923	947	935	-24.10	-16.10	0.66804979253112	10.5	1-7,947-941;8-16,937-929;17-21,927-923	x-x,940-938[BULt];x-x,928-928[BULt]	(((((.(((((((((...(((((((&)))))))---)))))))))-)))))	AAGGGUAAGAAAGAAAAAGAUGGAA&UUCUAUU---UUUUUUCUU-UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN45520_c0_g1_935_TPlot.pdf
TRINITY_DN4553_c0_g1:1950	si_a515	TRINITY_DN4553_c0_g1	1940	1960	1950	-38.60	-26.40	0.683937823834197	8	1-5,1960-1956;8-16,1952-1944;18-21,1943-1940	6-7,1955-1953[AILt];17-17,x-x[BULq]	((((-(((((((((...(((((&)))))-..))))))))).))))	GUGU-CGCCUUGCAGGCCCAAG&CUUGG-AAUGUAAGGCGGACAC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a515_TRINITY_DN4553_c0_g1_1950_TPlot.pdf
TRINITY_DN4553_c0_g1:826	si_a862	TRINITY_DN4553_c0_g1	815	835	826	-22.70	-15.70	0.691629955947136	10	2-8,834-828;11-19,825-817	1-1,835-835[UP5];9-10,827-826[SIL];20-21,816-815[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	UUGGUCUUUGACCGUUGGAUG&AAUCCAAUUAUUAAAGAUUUA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN4553_c0_g1_826_TPlot.pdf
TRINITY_DN4554_c0_g1:179	si_s893	TRINITY_DN4554_c0_g1	168	188	179	-29.10	-20.50	0.70446735395189	9.5	3-15,186-174	1-2,188-187[UP5];16-21,173-168[UP3]	......(((((((((((((..&..)))))))))))))......	UAAUAUGGAGAAAGCCUAUAU&AAAUAGGCUUUCUCUUCAAUU	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4554_c0_g1_179_TPlot.pdf
TRINITY_DN4554_c0_g1:183	si_s889	TRINITY_DN4554_c0_g1	172	192	183	-28.80	-20.50	0.711805555555556	13.5	7-19,186-174	1-6,192-187[UP5];20-21,173-172[UP3]	..(((((((((((((......&......)))))))))))))..	AUGGAGAAAGCCUAUAUUCGA&AAAUAAAUAGGCUUUCUCUUC	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN4554_c0_g1_183_TPlot.pdf
TRINITY_DN4554_c0_g1:184	si_s888	TRINITY_DN4554_c0_g1	173	193	184	-26.80	-20.50	0.764925373134328	14.5	8-20,186-174	1-7,193-187[UP5];21-21,173-173[UP3]	.(((((((((((((.......&.......))))))))))))).	UGGAGAAAGCCUAUAUUCGAC&AAAAUAAAUAGGCUUUCUCUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN4554_c0_g1_184_TPlot.pdf
TRINITY_DN4554_c0_g1:185	si_s887	TRINITY_DN4554_c0_g1	174	194	185	-26.80	-20.50	0.764925373134328	15.5	9-21,186-174	1-8,194-187[UP5]	(((((((((((((........&........)))))))))))))	GGAGAAAGCCUAUAUUCGACA&AAAAAUAAAUAGGCUUUCUCU	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4554_c0_g1_185_TPlot.pdf
TRINITY_DN45552_c0_g1:580	si_s312	TRINITY_DN45552_c0_g1	569	589	580	-29.00	-19.30	0.66551724137931	11	5-9,585-581;11-21,579-569	1-4,589-586[UP5];10-10,580-580[SIL]	(((((((((((.(((((....&....))))).)))))))))))	UAACAAGAAGGCUAGAGCGUU&AAAAUUCUGUCCUUCUUGUUA	3	0.99999999998043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN45552_c0_g1_580_TPlot.pdf
TRINITY_DN4555_c0_g1:1053	si_a446	TRINITY_DN4555_c0_g1	1042	1061	1053	-25.50	-19.70	0.772549019607843	6.5	2-7,1060-1055;9-21,1054-1042	1-1,1061-1061[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GUAACAACAGUUA-CUCGUGA&AUAUGAGAUAAUUGUUGUUAU	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN4555_c0_g1_1053_TPlot.pdf
TRINITY_DN4555_c0_g1:157	si_s78	TRINITY_DN4555_c0_g1	144	166	157	-26.20	-19.18	0.73206106870229	6.5	2-13,165-154;16-21,149-144	1-1,166-166[UP5];14-15,153-150[AILt]	((((((....((((((((((((.&.))))))))))))--..))))))	GGAAGAUUUCGGAAAGAAAAAGG&UUUUUUUCUUUCC--UUUCUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4555_c0_g1_157_TPlot.pdf
TRINITY_DN4556_c0_g1:1812	si_a71	TRINITY_DN4556_c0_g1	1802	1821	1812	-23.30	-16.30	0.699570815450644	4	2-15,1820-1807;17-20,1806-1803	1-1,1821-1821[UP5];16-16,x-x[BULq];21-21,1802-1802[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AAAUG-GAGACAAUUUGAAAA&CUUUCAAAUUGUUUUUCAUUA	4	0.999997970858953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4556_c0_g1_1812_TPlot.pdf
TRINITY_DN455_c0_g1:1075	si_a403	TRINITY_DN455_c0_g1	1064	1095	1075	-22.00	-14.30	0.65	26	2-9,1094-1087;10-21,1075-1064	1-1,1095-1095[UP5];x-x,1086-1076[BULt]	((((((((((((...........((((((((.&.))))))))-----------))))))))))))	AGGUAUAAACAAAAAUGGGCAUUGACAGUUCA&AGAAUUGUU-----------UUGUUUAUAUUU	2	0.999999999995761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN455_c0_g1_1075_TPlot.pdf
TRINITY_DN455_c0_g1:376	si_a703	TRINITY_DN455_c0_g1	365	386	376	-29.20	-19.20	0.657534246575342	10	2-4,385-383;5-14,381-372	1-1,386-386[UP5];x-x,382-382[BULt];15-21,371-365[UP3]	.......((((((((((.(((.&.)))-)))))))))).......	AUAAACGGGAAUGUACCAAGUA&AACU-GGUACAUUCCAAAAUAA	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN455_c0_g1_376_TPlot.pdf
TRINITY_DN455_c0_g1:753	si_s50	TRINITY_DN455_c0_g1	741	762	753	-29.00	-18.90	0.651724137931034	11	4-8,759-755;10-16,753-747;17-19,745-743	1-3,762-760[UP5];9-9,754-754[SIL];x-x,746-746[BULt];20-21,742-741[UP3]	..(((.(((((((.(((((...&...))))).)))))))-)))..	GAGCUCAACUUGAUGUCCAUUC&AAUUGGAUUUCAAGUU-AGCAA	2	0.982048939284292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN455_c0_g1_753_TPlot.pdf
TRINITY_DN45612_c0_g1:119	si_a409	TRINITY_DN45612_c0_g1	108	127	119	-19.50	-13.20	0.676923076923077	5.5	1-9,127-119;11-20,118-109	10-10,x-x[BULq];21-21,108-108[UP3]	.((((((((((-(((((((((&))))))))).)))))))))).	AUGUUUAAAUA-AAAUAAGAC&GUUUUGUUUAUAUUUAAAUAA	1	0.240972276808472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN45612_c0_g1_119_TPlot.pdf
TRINITY_DN45616_c0_g1:161	si_s570	TRINITY_DN45616_c0_g1	150	170	161	-30.50	-22.30	0.731147540983607	6	3-13,168-158;15-19,156-152	1-2,170-169[UP5];14-14,157-157[SIL];20-21,151-150[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	UAUUUUUUUUCCUUGUCCCCC&UCGGGACAAGGAAUAAAAAAA	1	0.00270668485342385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s570_TRINITY_DN45616_c0_g1_161_TPlot.pdf
TRINITY_DN4561_c0_g1:476	si_s568	TRINITY_DN4561_c0_g1	465	485	476	-30.60	-20.00	0.65359477124183	9	1-14,485-472	15-21,471-465[UP3]	.......((((((((((((((&)))))))))))))).......	AAAUUCGUCCUUGUUCUGAAA&UUUCGGGACAAGGAAUAAAAA	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN4561_c0_g1_476_TPlot.pdf
TRINITY_DN4561_c0_g1:477	si_s567	TRINITY_DN4561_c0_g1	466	486	477	-30.60	-20.70	0.676470588235294	8	1-15,486-472	16-21,471-466[UP3]	......(((((((((((((((&)))))))))))))))......	AAUUCGUCCUUGUUCUGAAAA&UUUUCGGGACAAGGAAUAAAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN4561_c0_g1_477_TPlot.pdf
TRINITY_DN4561_c0_g1:926	si_s801	TRINITY_DN4561_c0_g1	915	935	926	-28.20	-19.40	0.687943262411348	9	1-5,935-931;8-8,928-928;10-20,926-916	6-7,930-929[SIL];9-9,927-927[SIL];21-21,915-915[UP3]	.(((((((((((.(..(((((&)))))..).))))))))))).	CAGGUGGCGAAGCUUUAGUAC&GUAUUUUAUCUUCGUUACCUU	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN4561_c0_g1_926_TPlot.pdf
TRINITY_DN4561_c0_g1:998	si_a442	TRINITY_DN4561_c0_g1	986	1007	998	-29.30	-19.10	0.651877133105802	10.5	3-6,1005-1002;9-12,999-996;13-21,994-986	1-2,1007-1006[UP5];7-8,1001-1000[SIL];x-x,995-995[BULt]	(((((((((.((((..((((..&..))))..))))-)))))))))	CAACAGUUACUCUCUGGUCCUU&UUGGAUAUGAGA-UAAUUGUUG	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN4561_c0_g1_998_TPlot.pdf
TRINITY_DN45622_c0_g1:258	si_s79	TRINITY_DN45622_c0_g1	248	267	258	-26.20	-19.80	0.755725190839695	6	1-13,267-255;16-20,253-249	14-15,254-254[AILq];21-21,248-248[UP3]	.(((((.-(((((((((((((&)))))))))))))..))))).	UGGAAGU-GGGAAAGAAGGAA&UUUUUUCUUUCCUUUCUUCUU	2	0.99999970460364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN45622_c0_g1_258_TPlot.pdf
TRINITY_DN45622_c0_g1:260	si_s77	TRINITY_DN45622_c0_g1	250	269	260	-25.50	-20.00	0.784313725490196	5	1-15,269-255;18-21,253-250	16-17,254-254[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	GAAGU-GGGAAAGAAGGAAAG&UUUUUUUUCUUUCCUUUCUUC	2	0.999931146851312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN45622_c0_g1_260_TPlot.pdf
TRINITY_DN45622_c0_g1:261	si_s76	TRINITY_DN45622_c0_g1	248	270	261	-23.60	-17.40	0.73728813559322	8	2-16,269-255;17-20,252-249	1-1,270-270[UP5];x-x,254-253[BULt];21-21,248-248[UP3]	.((((..(((((((((((((((.&.)))))))))))))))--)))).	UGGAAGUGGGAAAGAAGGAAAGG&AUUUUUUUUCUUUCCU--UUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN45622_c0_g1_261_TPlot.pdf
TRINITY_DN4563_c0_g1:1182	si_a761	TRINITY_DN4563_c0_g1	1171	1191	1182	-30.10	-20.40	0.677740863787375	11	6-21,1186-1171	1-5,1191-1187[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUCAAUCGAAAACCUCAUUU&CCUUUGGGUUUUUGAUUGAUU	4	0.999999334405607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4563_c0_g1_1182_TPlot.pdf
TRINITY_DN4563_c0_g1:1207	si_a405	TRINITY_DN4563_c0_g1	1196	1216	1207	-19.80	-13.00	0.656565656565657	10	2-15,1215-1202	1-1,1216-1216[UP5];16-21,1201-1196[UP3]	......((((((((((((((.&.))))))))))))))......	CCCAAAGUGAACAAGAUAAUA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4563_c0_g1_1207_TPlot.pdf
TRINITY_DN4563_c0_g1:1470	si_s805	TRINITY_DN4563_c0_g1	1457	1479	1470	-28.60	-18.70	0.653846153846154	5	1-13,1479-1467;15-17,1465-1463;18-21,1460-1457	14-14,1466-1466[SIL];x-x,1462-1461[BULt]	((((..(((.(((((((((((((&))))))))))))).)))--))))	AGAAACAAGAUGACGAAGAUGAA&UUUAUCUUCGUUACCUU--UUCU	3	0.999999999999886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4563_c0_g1_1470_TPlot.pdf
TRINITY_DN4563_c0_g1:1472	si_s803	TRINITY_DN4563_c0_g1	1461	1481	1472	-26.00	-17.30	0.665384615384615	7.5	3-15,1479-1467;17-19,1465-1463	1-2,1481-1480[UP5];16-16,1466-1466[SIL];20-21,1462-1461[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	ACAAGAUGACGAAGAUGAAGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999998939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN4563_c0_g1_1472_TPlot.pdf
TRINITY_DN4563_c0_g1:1473	si_s802	TRINITY_DN4563_c0_g1	1462	1482	1473	-26.40	-17.30	0.65530303030303	8.5	4-16,1479-1467;18-20,1465-1463	1-3,1482-1480[UP5];17-17,1466-1466[SIL];21-21,1462-1462[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	CAAGAUGACGAAGAUGAAGAU&UAUUUUAUCUUCGUUACCUUU	4	0.999999999998807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN4563_c0_g1_1473_TPlot.pdf
TRINITY_DN4563_c0_g1:327	si_a489	TRINITY_DN4563_c0_g1	316	336	327	-27.70	-19.06	0.688086642599278	10.5	1-5,336-332;10-20,327-317	6-9,331-328[SIL];21-21,316-316[UP3]	.(((((((((((....(((((&)))))....))))))))))).	GGAAGAACGGCAGGUGCUAUA&UAUAGAAUAUGUCGUUUUUCG	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN4563_c0_g1_327_TPlot.pdf
TRINITY_DN4563_c0_g1:328	si_a488	TRINITY_DN4563_c0_g1	317	337	328	-26.40	-18.46	0.699242424242424	10	2-6,336-332;11-21,327-317	1-1,337-337[UP5];7-10,331-328[SIL]	(((((((((((....(((((.&.)))))....)))))))))))	GAAGAACGGCAGGUGCUAUAG&AUAUAGAAUAUGUCGUUUUUC	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN4563_c0_g1_328_TPlot.pdf
TRINITY_DN4563_c0_g1:794	si_a407	TRINITY_DN4563_c0_g1	783	803	794	-19.80	-12.90	0.651515151515151	11	1-13,803-791	14-21,790-783[UP3]	........(((((((((((((&)))))))))))))........	CCAAGCAGAUAGGCAAGACAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4563_c0_g1_794_TPlot.pdf
TRINITY_DN4563_c0_g1:797	si_a404	TRINITY_DN4563_c0_g1	786	806	797	-21.70	-14.50	0.668202764976959	9.5	1-2,806-805;4-16,803-791	3-3,804-804[SIL];17-21,790-786[UP3]	.....(((((((((((((.((&)).))))))))))))).....	AGCAGAUAGGCAAGACAAAUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4563_c0_g1_797_TPlot.pdf
TRINITY_DN45666_c0_g1:255	si_a627	TRINITY_DN45666_c0_g1	244	269	255	-29.50	-20.80	0.705084745762712	17	1-3,269-267;4-17,261-248	x-x,266-262[BULt];18-21,247-244[UP3]	....((((((((((((((.....(((&)))-----))))))))))))))....	UUCCGGUCGGCAUAGUACGAGUAGCC&GGC-----GUAUUAUGUCGAUUUUUU	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN45666_c0_g1_255_TPlot.pdf
TRINITY_DN45668_c0_g1:253	si_s75	TRINITY_DN45668_c0_g1	241	262	253	-24.00	-18.50	0.770833333333333	7	3-18,260-245;19-21,243-241	1-2,262-261[UP5];x-x,244-244[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	GGAUAAGGAGGGAAGAAAAAGA&UAUUUUUUUUCUUUCCUU-UCU	3	0.999999925894147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN45668_c0_g1_253_TPlot.pdf
TRINITY_DN45668_c0_g1:256	si_s72	TRINITY_DN45668_c0_g1	245	265	256	-24.10	-19.90	0.825726141078838	4.5	1-4,265-262;6-21,260-245	5-5,261-261[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	AAGGAGGGAAGAAAAAGAGAG&UUCUAUUUUUUUUCUUUCCUU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN45668_c0_g1_256_TPlot.pdf
TRINITY_DN45672_c0_g1:274	si_s75	TRINITY_DN45672_c0_g1	263	283	274	-24.00	-16.90	0.704166666666667	5.5	1-8,283-276;10-17,274-267;19-20,265-264	9-9,275-275[SIL];18-18,266-266[SIL];21-21,263-263[UP3]	.((.((((((((.((((((((&)))))))).)))))))).)).	CGACAGGAAAGAUAAAAGAUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN45672_c0_g1_274_TPlot.pdf
TRINITY_DN45672_c0_g1:346	si_a78	TRINITY_DN45672_c0_g1	335	355	346	-22.30	-15.00	0.672645739910314	8	2-16,354-340	1-1,355-355[UP5];17-21,339-335[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGGUGAAUAAUGAAAGACGAC&AUUGUUUUUCAUUAUUAAGAA	4	0.999999839810467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN45672_c0_g1_346_TPlot.pdf
TRINITY_DN45672_c0_g1:347	si_a77	TRINITY_DN45672_c0_g1	336	356	347	-22.20	-15.00	0.675675675675676	9	3-17,354-340	1-2,356-355[UP5];18-21,339-336[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUGAAUAAUGAAAGACGACA&AAUUGUUUUUCAUUAUUAAGA	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN45672_c0_g1_347_TPlot.pdf
TRINITY_DN45672_c0_g1:353	si_a71	TRINITY_DN45672_c0_g1	342	364	353	-23.30	-17.18	0.737339055793991	9.5	1-6,364-359;9-21,354-342	7-8,358-355[AILt]	(((((((((((((....((((((&))))))--..)))))))))))))	UAAUGAAAGACGACAGAUGAAAG&CUUUCA--AAUUGUUUUUCAUUA	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN45672_c0_g1_353_TPlot.pdf
TRINITY_DN45678_c0_g1:306	si_a808	TRINITY_DN45678_c0_g1	295	316	306	-34.90	-28.10	0.805157593123209	4	1-8,316-309;10-21,306-295	9-9,308-307[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	UUCUUCUUCUUCUUCUUCGGAU&AUCCGAAG-CGAAGAAGAAGAA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN45678_c0_g1_306_TPlot.pdf
TRINITY_DN45678_c0_g1:309	si_a806	TRINITY_DN45678_c0_g1	297	318	309	-35.50	-25.50	0.71830985915493	7	3-10,316-309;12-21,306-297	1-2,318-317[UP5];11-11,308-307[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	CUUCUUCUUCUUCUUCGGAUGC&CAAUCCGAAG-CGAAGAAGAAG	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a806_TRINITY_DN45678_c0_g1_309_TPlot.pdf
TRINITY_DN45696_c0_g1:622	si_s116	TRINITY_DN45696_c0_g1	611	631	622	-24.70	-16.90	0.684210526315789	4.5	2-15,630-617;17-19,615-613	1-1,631-631[UP5];16-16,616-616[SIL];20-21,612-611[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	AAUCUGCUGUUUUUCUAUUUG&AAAAUAGAAAAAUAGAAGAGU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN45696_c0_g1_622_TPlot.pdf
TRINITY_DN45696_c0_g1:627	si_s111	TRINITY_DN45696_c0_g1	616	636	627	-24.80	-16.20	0.653225806451613	7.5	3-5,634-632;7-20,630-617	1-2,636-635[UP5];6-6,631-631[SIL];21-21,616-616[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	GCUGUUUUUCUAUUUGCUAUU&AUUGGAAAAUAGAAAAAUAGA	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN45696_c0_g1_627_TPlot.pdf
TRINITY_DN45698_c0_g1:1143	si_a398	TRINITY_DN45698_c0_g1	1132	1152	1143	-22.40	-16.40	0.732142857142857	9	4-20,1149-1133	1-3,1152-1150[UP5];21-21,1132-1132[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAACGAAGCAGUUUUAUUAG&AAUAUAGAAUUGUUUUGUUUA	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN45698_c0_g1_1143_TPlot.pdf
TRINITY_DN4570_c0_g1:1316	si_s69	TRINITY_DN4570_c0_g1	1305	1325	1316	-23.40	-15.50	0.662393162393162	9	3-7,1323-1319;9-20,1317-1306	1-2,1325-1324[UP5];8-8,1318-1318[SIL];21-21,1305-1305[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AGAAGAGAAGAAAAAGGAGCC&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4570_c0_g1_1316_TPlot.pdf
TRINITY_DN4570_c0_g1:1317	si_s68	TRINITY_DN4570_c0_g1	1306	1326	1317	-23.10	-15.30	0.662337662337662	9.5	4-8,1323-1319;10-21,1317-1306	1-3,1326-1324[UP5];9-9,1318-1318[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAGAAGAAAAAGGAGCCA&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4570_c0_g1_1317_TPlot.pdf
TRINITY_DN45719_c0_g1:249	si_s76	TRINITY_DN45719_c0_g1	238	258	249	-23.60	-16.20	0.686440677966102	10	4-12,255-247;14-21,245-238	1-3,258-256[UP5];13-13,246-246[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AAGGGAGGCGAGGGAAAAUUA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN45719_c0_g1_249_TPlot.pdf
TRINITY_DN45727_c0_g1:259	si_a766	TRINITY_DN45727_c0_g1	251	268	259	-30.50	-20.30	0.665573770491803	7	1-10,268-259;13-13,258-258;15-21,257-251	11-12,x-x[BULq];14-14,x-x[BULq]	(((((((-(--((((((((((&))))))))))..).)))))))	AGUUGAA-C--UCAGAGACCC&GGGUUUUUGAUUGAUUCAACU	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN45727_c0_g1_259_TPlot.pdf
TRINITY_DN4572_c0_g1:2385	si_s315	TRINITY_DN4572_c0_g1	2373	2394	2385	-31.60	-26.10	0.825949367088608	7	1-17,2394-2378;18-19,2376-2375	x-x,2377-2377[BULt];20-21,2374-2373[UP3]	..((.(((((((((((((((((&)))))))))))))))))-))..	AAGUGGACGAGGAGGACGGAGU&AUUCUGUCCUUCUUGUU-ACAA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN4572_c0_g1_2385_TPlot.pdf
TRINITY_DN45732_c0_g1:23	si_a784	TRINITY_DN45732_c0_g1	12	32	23	-24.70	-17.90	0.724696356275304	6	3-7,30-26;9-21,24-12	1-2,32-31[UP5];8-8,25-25[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAGUAGAAAAAUUGAAGAAG&ACUCUUCUAUUUUUCUAUUUU	4	0.999996152107084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN45732_c0_g1_23_TPlot.pdf
TRINITY_DN45750_c0_g1:70	si_s256	TRINITY_DN45750_c0_g1	59	79	70	-29.30	-19.10	0.651877133105802	10	2-9,78-71;11-17,69-63	1-1,79-79[UP5];10-10,70-70[SIL];18-21,62-59[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AUCAUGAGUAAAGUGUUGGGU&UCCCGAUAUAUUACUCAAAAA	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s256_TRINITY_DN45750_c0_g1_70_TPlot.pdf
TRINITY_DN45775_c0_g1:257	si_s73	TRINITY_DN45775_c0_g1	246	269	257	-24.00	-16.60	0.691666666666667	12	1-6,269-264;7-18,260-249	x-x,263-261[BULt];19-21,248-246[UP3]	...((((((((((((...((((((&))))))---))))))))))))...	UACGGGAAGAAAGAACUUGAUAGG&UCUAUU---UUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN45775_c0_g1_257_TPlot.pdf
TRINITY_DN45775_c0_g1:392	si_s79	TRINITY_DN45775_c0_g1	381	401	392	-26.20	-20.40	0.778625954198473	3	1-11,401-391;13-21,389-381	12-12,390-390[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AAGAAGAAACGAAAGGAAAAA&UUUUUUCUUUCCUUUCUUCUU	3	0.999999924378671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN45775_c0_g1_392_TPlot.pdf
TRINITY_DN45775_c0_g1:395	si_s76	TRINITY_DN45775_c0_g1	384	404	395	-23.60	-15.50	0.656779661016949	6	3-14,402-391;16-21,389-384	1-2,404-403[UP5];15-15,390-390[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AAGAAACGAAAGGAAAAAGUA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN45775_c0_g1_395_TPlot.pdf
TRINITY_DN45788_c0_g1:1513	si_a784	TRINITY_DN45788_c0_g1	1502	1527	1513	-24.70	-16.70	0.676113360323887	12.5	1-8,1527-1520;9-11,1514-1512;13-21,1510-1502	x-x,1519-1515[BULt];12-12,1511-1511[SIL]	(((((((((.(((.....((((((((&))))))))-----))).)))))))))	AAGAUAGAAUAAUGUUAAAGAAGAGU&ACUCUUCU-----AUUUUUCUAUUUU	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN45788_c0_g1_1513_TPlot.pdf
TRINITY_DN45788_c0_g1:706	si_s618	TRINITY_DN45788_c0_g1	695	715	706	-30.30	-19.70	0.65016501650165	12.5	6-18,710-698	1-5,715-711[UP5];19-21,697-695[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUCAAGAUUGCUUGGAAUCAU&UUAAAUCCAAGCGAUCUUUUC	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN45788_c0_g1_706_TPlot.pdf
TRINITY_DN45788_c0_g1:708	si_s616	TRINITY_DN45788_c0_g1	697	717	708	-28.30	-19.70	0.696113074204947	14.5	8-20,710-698	1-7,717-711[UP5];21-21,697-697[UP3]	.(((((((((((((.......&.......))))))))))))).	CAAGAUUGCUUGGAAUCAUGU&UUUUAAAUCCAAGCGAUCUUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN45788_c0_g1_708_TPlot.pdf
TRINITY_DN45788_c0_g1:710	si_s614	TRINITY_DN45788_c0_g1	699	719	710	-28.30	-18.90	0.667844522968198	17.5	10-21,710-699	1-9,719-711[UP5]	((((((((((((.........&.........))))))))))))	AGAUUGCUUGGAAUCAUGUUG&UUUUUUAAAUCCAAGCGAUCU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN45788_c0_g1_710_TPlot.pdf
TRINITY_DN4579_c0_g1:1229	si_a411	TRINITY_DN4579_c0_g1	1218	1238	1229	-17.90	-11.80	0.659217877094972	8	2-9,1237-1230;11-18,1228-1221	1-1,1238-1238[UP5];10-10,1229-1229[SIL];19-21,1220-1218[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	GGCUAUUUAAAAGUAAGCAAU&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999984651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4579_c0_g1_1229_TPlot.pdf
TRINITY_DN4579_c0_g1:1230	si_a410	TRINITY_DN4579_c0_g1	1219	1239	1230	-17.80	-11.80	0.662921348314607	9	3-10,1237-1230;12-19,1228-1221	1-2,1239-1238[UP5];11-11,1229-1229[SIL];20-21,1220-1219[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	GCUAUUUAAAAGUAAGCAAUA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4579_c0_g1_1230_TPlot.pdf
TRINITY_DN457_c0_g1:1156	si_a788	TRINITY_DN457_c0_g1	1142	1165	1156	-24.80	-16.30	0.657258064516129	13.5	2-6,1164-1160;8-12,1158-1154;13-21,1150-1142	1-1,1165-1165[UP5];7-7,1159-1159[SIL];x-x,1153-1151[BULt]	(((((((((...(((((.(((((.&.))))).)))))---)))))))))	UUGGAAAGUGCAGGAGAUGUGGAU&UUCUAUUUUUCU---AUUUUCCAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN457_c0_g1_1156_TPlot.pdf
TRINITY_DN457_c0_g1:1219	si_s92	TRINITY_DN457_c0_g1	1207	1228	1219	-34.90	-23.40	0.670487106017192	7.5	2-11,1227-1218;13-19,1215-1209	1-1,1228-1228[UP5];12-12,1217-1216[AILt];20-21,1208-1207[UP3]	..(((((((..((((((((((.&.))))))))))-.)))))))..	GACCGAAGUUAAAGAAGAAGAU&UUCUUCUUCUU-CGCUUCGGAU	3	0.999999999986128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN457_c0_g1_1219_TPlot.pdf
TRINITY_DN457_c0_g1:1220	si_s91	TRINITY_DN457_c0_g1	1208	1229	1220	-34.70	-23.40	0.674351585014409	7.5	3-12,1227-1218;14-20,1215-1209	1-2,1229-1228[UP5];13-13,1217-1216[AILt];21-21,1208-1208[UP3]	.(((((((..((((((((((..&..))))))))))-.))))))).	ACCGAAGUUAAAGAAGAAGAUG&UUUCUUCUUCUU-CGCUUCGGA	3	0.999999999992888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN457_c0_g1_1220_TPlot.pdf
TRINITY_DN457_c0_g1:1644	si_a553	TRINITY_DN457_c0_g1	1629	1653	1644	-33.70	-22.20	0.658753709198813	15.5	1-5,1653-1649;8-11,1646-1643;12-20,1638-1630	6-7,1648-1647[SIL];x-x,1642-1639[BULt];21-21,1629-1629[UP3]	.(((((((((....((((..(((((&)))))..))))----))))))))).	UCGGGGAGGUACAUGAAGUUGUAGA&UCUAUUUCUUU----AUCUCCCCGU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN457_c0_g1_1644_TPlot.pdf
TRINITY_DN457_c0_g1:1645	si_a552	TRINITY_DN457_c0_g1	1630	1654	1645	-33.10	-23.30	0.70392749244713	14.5	1-6,1654-1649;9-12,1646-1643;13-21,1638-1630	7-8,1648-1647[SIL];x-x,1642-1639[BULt]	(((((((((....((((..((((((&))))))..))))----)))))))))	CGGGGAGGUACAUGAAGUUGUAGAU&AUCUAUUUCUUU----AUCUCCCCG	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN457_c0_g1_1645_TPlot.pdf
TRINITY_DN457_c0_g1:1646	si_a551	TRINITY_DN457_c0_g1	1631	1655	1646	-31.60	-21.80	0.689873417721519	11	2-7,1654-1649;10-13,1646-1643;14-21,1638-1631	1-1,1655-1655[UP5];8-9,1648-1647[SIL];x-x,1642-1639[BULt]	((((((((....((((..((((((.&.))))))..))))----))))))))	GGGGAGGUACAUGAAGUUGUAGAUG&AAUCUAUUUCUUU----AUCUCCCC	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN457_c0_g1_1646_TPlot.pdf
TRINITY_DN457_c0_g1:1840	si_a459	TRINITY_DN457_c0_g1	1829	1848	1840	-23.20	-16.10	0.693965517241379	5.5	1-6,1848-1843;8-19,1842-1831	7-7,x-x[BULq];20-21,1830-1829[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	AAAUAUAUUAUGUA-AACAAC&GUUGUUAUAUAUAAUAUGUAA	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN457_c0_g1_1840_TPlot.pdf
TRINITY_DN457_c0_g1:1842	si_a457	TRINITY_DN457_c0_g1	1831	1850	1842	-23.50	-17.20	0.731914893617021	4	1-8,1850-1843;10-21,1842-1831	9-9,x-x[BULq]	((((((((((((-((((((((&)))))))).))))))))))))	AUAUAUUAUGUA-AACAACAG&UUGUUGUUAUAUAUAAUAUGU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN457_c0_g1_1842_TPlot.pdf
TRINITY_DN457_c0_g1:1843	si_a455	TRINITY_DN457_c0_g1	1833	1852	1843	-21.10	-16.80	0.796208530805687	3.5	1-10,1852-1843;12-21,1842-1833	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	AUAUUAUGUA-AACAACAGUU&AAUUGUUGUUAUAUAUAAUAU	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN457_c0_g1_1843_TPlot.pdf
TRINITY_DN457_c0_g1:1844	si_a454	TRINITY_DN457_c0_g1	1834	1853	1844	-21.30	-15.80	0.741784037558685	4.5	2-11,1852-1843;13-21,1842-1834	1-1,1853-1853[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	UAUUAUGUA-AACAACAGUUC&UAAUUGUUGUUAUAUAUAAUA	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN457_c0_g1_1844_TPlot.pdf
TRINITY_DN457_c0_g1:1845	si_a453	TRINITY_DN457_c0_g1	1835	1854	1845	-21.10	-14.40	0.682464454976303	5.5	3-12,1852-1843;14-21,1842-1835	1-2,1854-1853[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AUUAUGUA-AACAACAGUUCU&AUAAUUGUUGUUAUAUAUAAU	2	0.999190583655494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN457_c0_g1_1845_TPlot.pdf
TRINITY_DN457_c0_g1:1847	si_a401	TRINITY_DN457_c0_g1	1838	1856	1847	-22.60	-17.40	0.769911504424779	6.5	1-10,1856-1847;13-21,1846-1838	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	AUGUAAACA--ACAGUUCUGU&AUAGAAUUGUUUUGUUUAUAU	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN457_c0_g1_1847_TPlot.pdf
TRINITY_DN457_c0_g1:1850	si_a398	TRINITY_DN457_c0_g1	1841	1859	1850	-22.40	-15.30	0.683035714285714	7	3-13,1857-1847;16-21,1846-1841	1-2,1859-1858[UP5];14-15,x-x[BULq]	((((((--(((((((((((..&..)))))))))))..))))))	UAAACA--ACAGUUCUGUAAG&AAUAUAGAAUUGUUUUGUUUA	2	0.999843442746574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN457_c0_g1_1850_TPlot.pdf
TRINITY_DN457_c0_g1:1947	si_s500	TRINITY_DN457_c0_g1	1936	1956	1947	-22.80	-15.60	0.684210526315789	6	1-4,1956-1953;6-17,1951-1940	5-5,1952-1952[SIL];18-21,1939-1936[UP3]	....((((((((((((.((((&)))).))))))))))))....	CAUUGAAUUGUUUUGUGUAUA&UAUAAACAAAACAAUUCUAUA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN457_c0_g1_1947_TPlot.pdf
TRINITY_DN457_c0_g1:1950	si_s497	TRINITY_DN457_c0_g1	1939	1959	1950	-22.00	-17.10	0.777272727272727	6	3-7,1957-1953;9-20,1951-1940	1-2,1959-1958[UP5];8-8,1952-1952[SIL];21-21,1939-1939[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGAAUUGUUUUGUGUAUAUAG&AAAUAUAAACAAAACAAUUCU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN457_c0_g1_1950_TPlot.pdf
TRINITY_DN457_c0_g1:1952	si_s495	TRINITY_DN457_c0_g1	1941	1961	1952	-19.80	-13.70	0.691919191919192	9	5-9,1957-1953;11-21,1951-1941	1-4,1961-1958[UP5];10-10,1952-1952[SIL]	(((((((((((.(((((....&....))))).)))))))))))	AAUUGUUUUGUGUAUAUAGCG&UUAAAUAUAAACAAAACAAUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN457_c0_g1_1952_TPlot.pdf
TRINITY_DN457_c0_g1:2055	si_s40	TRINITY_DN457_c0_g1	2045	2064	2055	-24.30	-15.90	0.654320987654321	10	3-11,2062-2054;13-20,2053-2046	1-2,2064-2063[UP5];12-12,x-x[BULq];21-21,2045-2045[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	CGAAUCCGA-UGUUGGAGAAA&AAUCUUUAAUAAUUGGAUUUC	2	0.996018473863355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN457_c0_g1_2055_TPlot.pdf
TRINITY_DN457_c0_g1:2056	si_s39	TRINITY_DN457_c0_g1	2046	2065	2056	-22.30	-15.90	0.713004484304933	10	4-12,2062-2054;14-21,2053-2046	1-3,2065-2063[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GAAUCCGA-UGUUGGAGAAAA&AAAUCUUUAAUAAUUGGAUUU	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN457_c0_g1_2056_TPlot.pdf
TRINITY_DN457_c0_g1:2089	si_a556	TRINITY_DN457_c0_g1	2078	2099	2089	-33.40	-22.70	0.679640718562874	10	1-7,2099-2093;8-17,2091-2082	x-x,2092-2092[BULt];18-21,2081-2078[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	GAUUCGGGGAGGUGCAAGAGGU&AUUUCUU-UAUCUCCCCGUGAA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN457_c0_g1_2089_TPlot.pdf
TRINITY_DN457_c0_g1:2090	si_a555	TRINITY_DN457_c0_g1	2079	2100	2090	-33.70	-22.70	0.673590504451039	10	2-8,2099-2093;9-18,2091-2082	1-1,2100-2100[UP5];x-x,2092-2092[BULt];19-21,2081-2079[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	AUUCGGGGAGGUGCAAGAGGUU&UAUUUCUU-UAUCUCCCCGUGA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN457_c0_g1_2090_TPlot.pdf
TRINITY_DN457_c0_g1:2093	si_a553	TRINITY_DN457_c0_g1	2081	2105	2093	-33.70	-23.60	0.700296735905044	13.5	1-5,2105-2101;6-10,2097-2093;11-20,2091-2082	x-x,2100-2098[BULt];x-x,2092-2092[BULt];21-21,2081-2081[UP3]	.((((((((((.(((((...(((((&)))))---)))))-)))))))))).	UCGGGGAGGUGCAAGAGGUUGUGGA&UCUAU---UUCUU-UAUCUCCCCGU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN457_c0_g1_2093_TPlot.pdf
TRINITY_DN457_c0_g1:2094	si_a552	TRINITY_DN457_c0_g1	2082	2106	2094	-33.10	-24.70	0.746223564954683	12.5	1-6,2106-2101;7-11,2097-2093;12-21,2091-2082	x-x,2100-2098[BULt];x-x,2092-2092[BULt]	((((((((((.(((((...((((((&))))))---)))))-))))))))))	CGGGGAGGUGCAAGAGGUUGUGGAU&AUCUAU---UUCUU-UAUCUCCCCG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN457_c0_g1_2094_TPlot.pdf
TRINITY_DN457_c0_g1:2095	si_a551	TRINITY_DN457_c0_g1	2083	2107	2095	-31.60	-23.20	0.734177215189873	13	2-7,2106-2101;8-12,2097-2093;13-21,2091-2083	1-1,2107-2107[UP5];x-x,2100-2098[BULt];x-x,2092-2092[BULt]	(((((((((.(((((...((((((.&.))))))---)))))-)))))))))	GGGGAGGUGCAAGAGGUUGUGGAUG&AAUCUAU---UUCUU-UAUCUCCCC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN457_c0_g1_2095_TPlot.pdf
TRINITY_DN457_c0_g1:803	si_a200	TRINITY_DN457_c0_g1	792	812	803	-29.20	-19.10	0.654109589041096	5	1-13,812-800;15-16,798-797;18-19,795-794	14-14,799-799[SIL];17-17,796-796[SIL];20-21,793-792[UP3]	..((.((.(((((((((((((&))))))))))))).)).))..	AUGUGGACUUAUUAGUGAAUA&UGUUCACUAAUAAAUCGACUA	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN457_c0_g1_803_TPlot.pdf
TRINITY_DN457_c0_g1:853	si_s898	TRINITY_DN457_c0_g1	842	863	853	-30.70	-21.50	0.700325732899023	7.5	1-8,863-856;9-19,854-844	x-x,855-855[BULt];20-21,843-842[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	ACUGAGGUUGAAGAAGAAGGUU&GGCUUUCU-CUUCAAUUUCAAU	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN457_c0_g1_853_TPlot.pdf
TRINITY_DN457_c0_g1:854	si_s897	TRINITY_DN457_c0_g1	843	864	854	-31.30	-22.10	0.706070287539936	7	1-9,864-856;10-20,854-844	x-x,855-855[BULt];21-21,843-843[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	CUGAGGUUGAAGAAGAAGGUUU&AGGCUUUCU-CUUCAAUUUCAA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN457_c0_g1_854_TPlot.pdf
TRINITY_DN457_c0_g1:856	si_s896	TRINITY_DN457_c0_g1	844	865	856	-31.60	-21.80	0.689873417721519	7	2-10,864-856;11-21,854-844	1-1,865-865[UP5];x-x,855-855[BULt]	(((((((((((.(((((((((.&.)))))))))-)))))))))))	UGAGGUUGAAGAAGAAGGUUUU&UAGGCUUUCU-CUUCAAUUUCA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN457_c0_g1_856_TPlot.pdf
TRINITY_DN457_c0_g1:857	si_s895	TRINITY_DN457_c0_g1	845	866	857	-31.10	-20.30	0.652733118971061	9	3-11,864-856;12-21,854-845	1-2,866-865[UP5];x-x,855-855[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	GAGGUUGAAGAAGAAGGUUUUG&AUAGGCUUUCU-CUUCAAUUUC	4	0.999999752886627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN457_c0_g1_857_TPlot.pdf
TRINITY_DN4582_c1_g1:780	si_a635	TRINITY_DN4582_c1_g1	769	789	780	-26.10	-17.50	0.670498084291188	6.5	1-17,789-773	18-21,772-769[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACAUUUCAAAAAAAUUGGCAU&AUGUCGAUUUUUUUGAGUAAU	4	0.999999998772768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4582_c1_g1_780_TPlot.pdf
TRINITY_DN4582_c1_g1:783	si_a632	TRINITY_DN4582_c1_g1	772	792	783	-26.10	-17.50	0.670498084291188	8.5	4-20,789-773	1-3,792-790[UP5];21-21,772-772[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUUCAAAAAAAUUGGCAUCCU&AUUAUGUCGAUUUUUUUGAGU	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4582_c1_g1_783_TPlot.pdf
TRINITY_DN4582_c1_g1:784	si_a631	TRINITY_DN4582_c1_g1	773	793	784	-25.70	-17.50	0.680933852140078	9.5	5-21,789-773	1-4,793-790[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUCAAAAAAAUUGGCAUCCUC&UAUUAUGUCGAUUUUUUUGAG	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4582_c1_g1_784_TPlot.pdf
TRINITY_DN4584_c0_g1:1464	si_s308	TRINITY_DN4584_c0_g1	1453	1473	1464	-32.80	-21.40	0.652439024390244	8	2-8,1472-1466;10-18,1464-1456	1-1,1473-1473[UP5];9-9,1465-1465[SIL];19-21,1455-1453[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	UCCAGGGGCAGAUUUUUCGUU&UGCGAAAAUUCUGUCCUUCUU	2	0.987331012997792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN4584_c0_g1_1464_TPlot.pdf
TRINITY_DN4584_c0_g1:1468	si_s304	TRINITY_DN4584_c0_g1	1457	1475	1468	-32.30	-21.20	0.656346749226006	7	1-3,1475-1473;6-12,1472-1466;14-21,1464-1457	4-5,x-x[BULq];13-13,1465-1465[SIL]	((((((((.(((((((--(((&)))..))))))).))))))))	GGGGCAGAUUUUUCGU--UUC&GAAUUGCGAAAAUUCUGUCCU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN4584_c0_g1_1468_TPlot.pdf
TRINITY_DN4584_c0_g1:1908	si_s208	TRINITY_DN4584_c0_g1	1897	1917	1908	-34.50	-23.00	0.666666666666667	11	5-18,1913-1900	1-4,1917-1914[UP5];19-21,1899-1897[UP3]	...((((((((((((((....&....))))))))))))))...	CGAUUGAGCACAACUGGGAGA&UGUACCAGUUGUGUUCGAAAC	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN4584_c0_g1_1908_TPlot.pdf
TRINITY_DN45858_c0_g1:22	si_s537	TRINITY_DN45858_c0_g1	11	31	22	-26.40	-18.60	0.704545454545455	9	1-6,31-26;9-18,23-14	7-8,25-24[SIL];19-21,13-11[UP3]	...((((((((((..((((((&))))))..))))))))))...	AGCUUUGAUCGGAGAAGAAGU&AUUUUUGAUCCGAUCAAAAUA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN45858_c0_g1_22_TPlot.pdf
TRINITY_DN45858_c0_g1:23	si_s536	TRINITY_DN45858_c0_g1	12	32	23	-27.70	-18.70	0.675090252707581	9	2-7,31-26;10-19,23-14	1-1,32-32[UP5];8-9,25-24[SIL];20-21,13-12[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	GCUUUGAUCGGAGAAGAAGUU&CAUUUUUGAUCCGAUCAAAAU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN45858_c0_g1_23_TPlot.pdf
TRINITY_DN45858_c0_g1:37	si_s434	TRINITY_DN45858_c0_g1	26	46	37	-21.50	-14.00	0.651162790697674	10	1-13,46-34	14-21,33-26[UP3]	........(((((((((((((&)))))))))))))........	AGAAGUUGAUGUAGUUGUUGU&ACAAUAAUUACAUAUUAUAUA	2	0.989873797618439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN45858_c0_g1_37_TPlot.pdf
TRINITY_DN45858_c0_g1:40	si_s431	TRINITY_DN45858_c0_g1	29	49	40	-21.10	-14.30	0.677725118483412	12	4-16,46-34	1-3,49-47[UP5];17-21,33-29[UP3]	.....(((((((((((((...&...))))))))))))).....	AGUUGAUGUAGUUGUUGUGGA&AUAACAAUAAUUACAUAUUAU	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN45858_c0_g1_40_TPlot.pdf
TRINITY_DN45858_c0_g1:42	si_s429	TRINITY_DN45858_c0_g1	31	51	42	-21.10	-14.30	0.677725118483412	13.5	6-18,46-34	1-5,51-47[UP5];19-21,33-31[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUGAUGUAGUUGUUGUGGAUA&AUAUAACAAUAAUUACAUAUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN45858_c0_g1_42_TPlot.pdf
TRINITY_DN45858_c0_g1:43	si_s428	TRINITY_DN45858_c0_g1	32	52	43	-21.50	-14.30	0.665116279069767	14.5	7-19,46-34	1-6,52-47[UP5];20-21,33-32[UP3]	..(((((((((((((......&......)))))))))))))..	UGAUGUAGUUGUUGUGGAUAC&UAUAUAACAAUAAUUACAUAU	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN45858_c0_g1_43_TPlot.pdf
TRINITY_DN4586_c0_g1:4494	si_a401	TRINITY_DN4586_c0_g1	4483	4503	4494	-22.60	-16.50	0.730088495575221	11.5	4-17,4500-4487	1-3,4503-4501[UP5];18-21,4486-4483[UP3]	....((((((((((((((...&...))))))))))))))....	ACUCGAACAAGACAGUUCGAC&AUAGAAUUGUUUUGUUUAUAU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN4586_c0_g1_4494_TPlot.pdf
TRINITY_DN4586_c0_g1:4496	si_a399	TRINITY_DN4586_c0_g1	4485	4505	4496	-22.60	-16.50	0.730088495575221	13	6-19,4500-4487	1-5,4505-4501[UP5];20-21,4486-4485[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGAACAAGACAGUUCGACAU&AUAUAGAAUUGUUUUGUUUAU	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN4586_c0_g1_4496_TPlot.pdf
TRINITY_DN45875_c0_g1:48	si_a450	TRINITY_DN45875_c0_g1	38	57	48	-25.20	-18.50	0.734126984126984	7	1-11,57-47;13-17,46-42	12-12,x-x[BULq];18-21,41-38[UP3]	....(((((-(((((((((((&))))))))))).)))))....	UCGAGUGAC-ACAAUUAUCUC&GAGAUAAUUGUUGUUAUAUAU	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN45875_c0_g1_48_TPlot.pdf
TRINITY_DN45875_c0_g1:50	si_a448	TRINITY_DN45875_c0_g1	40	59	50	-25.50	-18.60	0.729411764705882	7	3-13,57-47;15-19,46-42	1-2,59-58[UP5];14-14,x-x[BULq];20-21,41-40[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	GAGUGAC-ACAAUUAUCUCGA&AUGAGAUAAUUGUUGUUAUAU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN45875_c0_g1_50_TPlot.pdf
TRINITY_DN4587_c0_g2:90	si_s562	TRINITY_DN4587_c0_g2	78	99	90	-31.10	-21.10	0.678456591639871	8.5	1-11,99-89;12-19,87-80	x-x,88-88[BULt];20-21,79-78[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AGUCUUGUCCAUGAAGGUGUUA&UAAUAUUUUCG-GGACAAGGAA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s562_TRINITY_DN4587_c0_g2_90_TPlot.pdf
TRINITY_DN4587_c0_g2:91	si_s561	TRINITY_DN4587_c0_g2	79	100	91	-31.10	-21.50	0.691318327974277	8	1-12,100-89;13-20,87-80	x-x,88-88[BULt];21-21,79-79[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	GUCUUGUCCAUGAAGGUGUUAG&UUAAUAUUUUCG-GGACAAGGA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s561_TRINITY_DN4587_c0_g2_91_TPlot.pdf
TRINITY_DN4587_c0_g2:92	si_s560	TRINITY_DN4587_c0_g2	80	101	92	-30.20	-21.30	0.705298013245033	7	2-13,100-89;14-21,87-80	1-1,101-101[UP5];x-x,88-88[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	UCUUGUCCAUGAAGGUGUUAGG&AUUAAUAUUUUCG-GGACAAGG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s560_TRINITY_DN4587_c0_g2_92_TPlot.pdf
TRINITY_DN4587_c0_g2:93	si_s559	TRINITY_DN4587_c0_g2	81	102	93	-27.80	-20.20	0.726618705035971	8.5	3-14,100-89;15-21,87-81	1-2,102-101[UP5];x-x,88-88[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	CUUGUCCAUGAAGGUGUUAGGU&AAUUAAUAUUUUCG-GGACAAG	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN4587_c0_g2_93_TPlot.pdf
TRINITY_DN4589_c0_g1:2480	si_s57	TRINITY_DN4589_c0_g1	2469	2490	2480	-29.30	-20.60	0.703071672354949	9	4-6,2487-2485;7-21,2483-2469	1-3,2490-2488[UP5];x-x,2484-2484[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	GUAGAGGUUGCUAAUGUUGCAU&UUUCAA-GUUAGCAACUUCUAU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN4589_c0_g1_2480_TPlot.pdf
TRINITY_DN458_c0_g1:1104	si_a887	TRINITY_DN458_c0_g1	1093	1113	1104	-22.90	-14.90	0.650655021834061	8.5	1-6,1113-1108;9-14,1105-1100;16-20,1098-1094	7-8,1107-1106[SIL];15-15,1099-1099[SIL];21-21,1093-1093[UP3]	.(((((.((((((..((((((&))))))..)))))).))))).	AUAUUAAUGCUGUUGUGGUUG&CAAUCAAUAUAGUAAUAAUAA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN458_c0_g1_1104_TPlot.pdf
TRINITY_DN458_c0_g1:2723	si_a346	TRINITY_DN458_c0_g1	2711	2732	2723	-25.90	-17.80	0.687258687258687	7.5	1-11,2732-2722;12-13,2720-2719;16-19,2716-2713	x-x,2721-2721[BULt];14-15,2718-2717[SIL];20-21,2712-2711[UP3]	..((((..((.(((((((((((&)))))))))))-))..))))..	CCUGGAUGUGUAUAUUUUCGGG&CCCGAAAAUAU-UAAUUCUAUU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN458_c0_g1_2723_TPlot.pdf
TRINITY_DN458_c0_g1:2724	si_a345	TRINITY_DN458_c0_g1	2712	2733	2724	-26.90	-19.40	0.721189591078067	6	1-12,2733-2722;13-14,2720-2719;17-20,2716-2713	x-x,2721-2721[BULt];15-16,2718-2717[SIL];21-21,2712-2712[UP3]	.((((..((.((((((((((((&))))))))))))-))..)))).	CUGGAUGUGUAUAUUUUCGGGA&UCCCGAAAAUAU-UAAUUCUAU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN458_c0_g1_2724_TPlot.pdf
TRINITY_DN458_c0_g1:2725	si_a344	TRINITY_DN458_c0_g1	2713	2734	2725	-28.50	-19.30	0.67719298245614	5	2-13,2733-2722;14-15,2720-2719;18-21,2716-2713	1-1,2734-2734[UP5];x-x,2721-2721[BULt];16-17,2718-2717[SIL]	((((..((.((((((((((((.&.))))))))))))-))..))))	UGGAUGUGUAUAUUUUCGGGAA&GUCCCGAAAAUAU-UAAUUCUA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN458_c0_g1_2725_TPlot.pdf
TRINITY_DN458_c0_g1:727	si_s622	TRINITY_DN458_c0_g1	716	737	727	-34.20	-23.10	0.675438596491228	6.5	2-7,736-731;8-19,729-718	1-1,737-737[UP5];x-x,730-730[BULt];20-21,717-716[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	AGAUGAAAAGAUCGAUUUGGAG&AUCCAAG-CGAUCUUUUCGUAG	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN458_c0_g1_727_TPlot.pdf
TRINITY_DN458_c0_g1:731	si_s619	TRINITY_DN458_c0_g1	719	740	731	-31.70	-21.20	0.668769716088328	11	5-10,736-731;11-20,729-720	1-4,740-737[UP5];x-x,730-730[BULt];21-21,719-719[UP3]	.((((((((((.((((((....&....))))))-)))))))))).	UGAAAAGAUCGAUUUGGAGACC&UAAAUCCAAG-CGAUCUUUUCG	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN458_c0_g1_731_TPlot.pdf
TRINITY_DN458_c0_g1:770	si_s63	TRINITY_DN458_c0_g1	759	781	770	-25.80	-17.60	0.682170542635659	8.5	1-7,781-775;9-16,771-764;18-21,762-759	8-8,774-772[AILt];17-17,763-763[SIL]	((((.((((((((...(((((((&)))))))--.)))))))).))))	AAAACGAUAGAAGACAUGCUAGC&GUUAGCA--ACUUCUAUUUUUUU	4	0.999966384966176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN458_c0_g1_770_TPlot.pdf
TRINITY_DN458_c0_g1:930	si_a556	TRINITY_DN458_c0_g1	919	939	930	-33.40	-22.30	0.667664670658683	10	4-11,936-929;13-17,927-923;19-20,921-920	1-3,939-937[UP5];12-12,928-928[SIL];18-18,922-922[SIL];21-21,919-919[UP3]	.((.(((((.((((((((...&...)))))))).))))).)).	CUCUCGGGGUGAUAAGGACGC&AUUUCUUUAUCUCCCCGUGAA	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN458_c0_g1_930_TPlot.pdf
TRINITY_DN458_c0_g1:931	si_a555	TRINITY_DN458_c0_g1	920	940	931	-33.70	-22.00	0.652818991097923	10	5-12,936-929;14-18,927-923;20-21,921-920	1-4,940-937[UP5];13-13,928-928[SIL];19-19,922-922[SIL]	((.(((((.((((((((....&....)))))))).))))).))	UCUCGGGGUGAUAAGGACGCU&UAUUUCUUUAUCUCCCCGUGA	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN458_c0_g1_931_TPlot.pdf
TRINITY_DN4590_c0_g2:832	si_a89	TRINITY_DN4590_c0_g2	821	841	832	-26.40	-17.40	0.659090909090909	14	7-19,835-823	1-6,841-836[UP5];20-21,822-821[UP3]	..(((((((((((((......&......)))))))))))))..	AGUGUUGCCUUUUCUGUUGAC&UUAUUAAGAAAAGGUAACGAA	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN4590_c0_g2_832_TPlot.pdf
TRINITY_DN4590_c0_g2:833	si_a88	TRINITY_DN4590_c0_g2	822	842	833	-26.40	-17.40	0.659090909090909	15	8-20,835-823	1-7,842-836[UP5];21-21,822-822[UP3]	.(((((((((((((.......&.......))))))))))))).	GUGUUGCCUUUUCUGUUGACA&AUUAUUAAGAAAAGGUAACGA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a88_TRINITY_DN4590_c0_g2_833_TPlot.pdf
TRINITY_DN45921_c0_g1:288	si_a456	TRINITY_DN45921_c0_g1	277	297	288	-22.80	-15.50	0.679824561403509	8.5	4-19,294-279	1-3,297-295[UP5];20-21,278-277[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCUAUUGUAUAUAACAAUUGU&AUUGUUGUUAUAUAUAAUAUG	2	0.969723026988916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN45921_c0_g1_288_TPlot.pdf
TRINITY_DN45921_c0_g1:289	si_a455	TRINITY_DN45921_c0_g1	278	298	289	-21.10	-15.50	0.734597156398104	6.5	2-3,297-296;5-20,294-279	1-1,298-298[UP5];4-4,295-295[SIL];21-21,278-278[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	CUAUUGUAUAUAACAAUUGUA&AAUUGUUGUUAUAUAUAAUAU	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN45921_c0_g1_289_TPlot.pdf
TRINITY_DN4592_c2_g1:111	si_a192	TRINITY_DN4592_c2_g1	101	120	111	-31.90	-21.70	0.68025078369906	8.5	2-11,119-110;13-19,109-103	1-1,120-120[UP5];12-12,x-x[BULq];20-21,102-101[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	AAAUUGGUG-AUAGGGGAGGU&UCUUUCCCUGUUCACUAAUAA	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN4592_c2_g1_111_TPlot.pdf
TRINITY_DN4592_c2_g1:238	si_a461	TRINITY_DN4592_c2_g1	226	247	238	-21.50	-15.30	0.711627906976744	7.5	2-10,246-238;11-19,236-228	1-1,247-247[UP5];x-x,237-237[BULt];20-21,227-226[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	UUUUACGUAUUCAUGUGUAACC&UGUUAUAUAU-AAUAUGUAAUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN4592_c2_g1_238_TPlot.pdf
TRINITY_DN4592_c2_g1:240	si_a459	TRINITY_DN4592_c2_g1	228	249	240	-23.20	-15.20	0.655172413793103	9.5	4-12,246-238;13-21,236-228	1-3,249-247[UP5];x-x,237-237[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	UUACGUAUUCAUGUGUAACCUU&GUUGUUAUAUAU-AAUAUGUAA	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN4592_c2_g1_240_TPlot.pdf
TRINITY_DN4593_c0_g4:1289	si_a604	TRINITY_DN4593_c0_g4	1277	1297	1289	-31.60	-20.80	0.658227848101266	6.5	1-5,1297-1293;7-10,1292-1289;11-21,1287-1277	6-6,x-x[BULq];x-x,1288-1288[BULt]	(((((((((((.((((-(((((&))))).))))-)))))))))))	GUUGAUUGGAGCUUGC-AAAGU&AUUUUCGCAA-UUCCAAUCGAC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN4593_c0_g4_1289_TPlot.pdf
TRINITY_DN4593_c0_g5:1244	si_a604	TRINITY_DN4593_c0_g5	1232	1252	1244	-31.60	-20.80	0.658227848101266	6.5	1-5,1252-1248;7-10,1247-1244;11-21,1242-1232	6-6,x-x[BULq];x-x,1243-1243[BULt]	(((((((((((.((((-(((((&))))).))))-)))))))))))	GUUGAUUGGAGCUUGC-AAAGU&AUUUUCGCAA-UUCCAAUCGAC	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN4593_c0_g5_1244_TPlot.pdf
TRINITY_DN4593_c0_g8:2043	si_a899	TRINITY_DN4593_c0_g8	2032	2052	2043	-18.70	-12.30	0.657754010695187	9.5	4-19,2049-2034	1-3,2052-2050[UP5];20-21,2033-2032[UP3]	..((((((((((((((((...&...))))))))))))))))..	CGUUUGUAUUAUUUAUUGGUU&UAAUAAUAAGUAAUAUAAAAA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN4593_c0_g8_2043_TPlot.pdf
TRINITY_DN4593_c0_g8:939	si_s184	TRINITY_DN4593_c0_g8	928	948	939	-33.40	-22.50	0.673652694610778	10	1-14,948-935	15-21,934-928[UP3]	.......((((((((((((((&)))))))))))))).......	UAGUGAUAUUGUUGCUUGGGC&GCCCGAGUAACGAUUAUUUUG	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN4593_c0_g8_939_TPlot.pdf
TRINITY_DN4593_c0_g8:945	si_s178	TRINITY_DN4593_c0_g8	934	954	945	-34.70	-26.10	0.752161383285303	9	4-20,951-935	1-3,954-952[UP5];21-21,934-934[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAUUGUUGCUUGGGCAUUAGA&AAAGAUGCCCGAGUAACGAUU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s178_TRINITY_DN4593_c0_g8_945_TPlot.pdf
TRINITY_DN45949_c1_g1:110	si_s90	TRINITY_DN45949_c1_g1	100	119	110	-35.30	-30.30	0.858356940509915	4.5	1-18,119-102;20-21,101-100	19-19,x-x[BULq]	((-((((((((((((((((((&)))))))))))))))))).))	CC-AGGCGAAGGAGAGGAGAG&CUUUCUUCUUCUUCGCUUCGG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN45949_c1_g1_110_TPlot.pdf
TRINITY_DN4595_c0_g1:646	si_s629	TRINITY_DN4595_c0_g1	631	655	646	-34.60	-22.70	0.65606936416185	11.5	1-5,655-651;7-12,649-644;13-14,640-639;15-21,637-631	6-6,650-650[SIL];x-x,643-641[BULt];x-x,638-638[BULt]	(((((((.((...((((((.(((((&))))).))))))---))-)))))))	CAAGCGCUCUACAACGAGGUGAUCG&CGAUCUUUUCGU---AG-GCGUUUG	3	0.999949787575333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN4595_c0_g1_646_TPlot.pdf
TRINITY_DN45960_c0_g1:540	si_s485	TRINITY_DN45960_c0_g1	529	549	540	-18.10	-11.80	0.651933701657459	8	2-16,548-534	1-1,549-549[UP5];17-21,533-529[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUCAAUUUGAAUAAAUGUAU&CUAUAUUUAUUUAAAUAUAAA	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN45960_c0_g1_540_TPlot.pdf
TRINITY_DN45972_c0_g1:373	si_s808	TRINITY_DN45972_c0_g1	362	385	373	-28.60	-19.50	0.681818181818182	8.5	1-6,385-380;7-9,377-375;10-19,373-364	x-x,379-378[BULt];x-x,374-374[BULt];20-21,363-362[UP3]	..((((((((((.(((..((((((&))))))--)))-))))))))))..	AAGAGAAAAGGUAAACUAGAAGAU&AUCUUC--GUU-ACCUUUUCUUAA	4	0.999999861362699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN45972_c0_g1_373_TPlot.pdf
TRINITY_DN45972_c0_g1:377	si_s805	TRINITY_DN45972_c0_g1	365	388	377	-28.60	-19.20	0.671328671328671	9	2-9,387-380;10-12,377-375;13-21,373-365	1-1,388-388[UP5];x-x,379-378[BULt];x-x,374-374[BULt]	(((((((((.(((..((((((((.&.))))))))--)))-)))))))))	AGAAAAGGUAAACUAGAAGAUGGU&UUUAUCUUC--GUU-ACCUUUUCU	0	0.393952751765245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN45972_c0_g1_377_TPlot.pdf
TRINITY_DN45977_c0_g1:418	si_a792	TRINITY_DN45977_c0_g1	407	427	418	-27.60	-19.10	0.692028985507246	9.5	2-15,426-413;18-20,410-408	1-1,427-427[UP5];16-17,412-411[SIL];21-21,407-407[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	GGGGGAGGAGGAUGGAGGAAG&AUUUUUCUAUUUUCCAAUCCG	2	0.983951203433408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN45977_c0_g1_418_TPlot.pdf
TRINITY_DN45977_c0_g1:479	si_a632	TRINITY_DN45977_c0_g1	468	489	479	-26.10	-17.70	0.67816091954023	8.5	1-6,489-484;7-18,482-471	x-x,483-483[BULt];19-21,470-468[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	AUGCGAGGAAGUCGAGCAUGAU&AUUAUG-UCGAUUUUUUUGAGU	4	0.999999147316211	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN45977_c0_g1_479_TPlot.pdf
TRINITY_DN45977_c0_g1:482	si_a629	TRINITY_DN45977_c0_g1	471	492	482	-26.30	-18.50	0.703422053231939	9	3-9,490-484;10-21,482-471	1-2,492-491[UP5];x-x,483-483[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	CGAGGAAGUCGAGCAUGAUGAU&CGUAUUAUG-UCGAUUUUUUUG	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN45977_c0_g1_482_TPlot.pdf
TRINITY_DN45979_c0_g1:386	si_s555	TRINITY_DN45979_c0_g1	375	396	386	-26.90	-17.50	0.650557620817844	8	2-8,395-389;10-20,386-376	1-1,396-396[UP5];9-9,388-387[AILt];21-21,375-375[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	ACCUGGAAAUAUGGAAUUCUGA&AUAGAAUU-AAUAUUUUCGGGA	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN45979_c0_g1_386_TPlot.pdf
TRINITY_DN4597_c1_g1:1816	si_a771	TRINITY_DN4597_c1_g1	1805	1824	1816	-29.40	-19.70	0.670068027210884	7.5	2-9,1823-1816;12-20,1814-1806	1-1,1824-1824[UP5];10-11,1815-1815[AILq];21-21,1805-1805[UP3]	.(((((((((.-((((((((.&.))))))))..))))))))).	UGAGGAGUUGU-UUAAUCAAU&UUUGAUUGAUUCAACUCUUCU	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN4597_c1_g1_1816_TPlot.pdf
TRINITY_DN45981_c0_g1:383	si_a117	TRINITY_DN45981_c0_g1	370	392	383	-31.00	-21.58	0.696129032258064	10.5	2-12,391-381;15-19,376-372	1-1,392-392[UP5];13-14,380-377[AILt];20-21,371-370[UP3]	..(((((....(((((((((((.&.)))))))))))--..)))))..	UGGCUGUCUGCGACAAGCUCGUU&UACGAGCUUGUU--UUAUAGCAA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN45981_c0_g1_383_TPlot.pdf
TRINITY_DN45982_c0_g1:140	si_s343	TRINITY_DN45982_c0_g1	129	149	140	-33.40	-22.20	0.664670658682635	12.5	6-19,144-131	1-5,149-145[UP5];20-21,130-129[UP3]	..((((((((((((((.....&.....))))))))))))))..	CGUCUUUGUCUCCUCGCACUA&AUUCACGGGGAGAUAAAGAAA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s343_TRINITY_DN45982_c0_g1_140_TPlot.pdf
TRINITY_DN4598_c0_g1:1283	si_s280	TRINITY_DN4598_c0_g1	1271	1291	1283	-36.40	-24.90	0.684065934065934	9.5	1-6,1291-1286;9-18,1284-1275;19-19,1273-1273	7-8,1285-1285[AILq];x-x,1274-1274[BULt];20-21,1272-1271[UP3]	..(.((((((((((.-((((((&))))))..))))))))))-)..	UAGUACUGGGCGUGG-GUGUCG&CGACAUAAUACGCCUAGU-CGA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s280_TRINITY_DN4598_c0_g1_1283_TPlot.pdf
TRINITY_DN45990_c0_g1:292	si_a135	TRINITY_DN45990_c0_g1	277	301	292	-25.70	-16.90	0.657587548638132	14	1-2,301-300;5-12,297-290;13-21,285-277	3-4,299-298[SIL];x-x,289-286[BULt]	(((((((((....((((((((..((&))..))))))))----)))))))))	GACAGCGAUCCCGUGAUUACUCAUG&CAAUAGUAAUUA----AUCGUUGUU	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN45990_c0_g1_292_TPlot.pdf
TRINITY_DN45995_c0_g1:240	si_a177	TRINITY_DN45995_c0_g1	229	253	240	-32.90	-22.30	0.677811550151976	12	1-9,253-245;10-14,240-236;16-21,234-229	x-x,244-241[BULt];15-15,235-235[SIL]	((((((.(((((....(((((((((&)))))))))----))))).))))))	GGAAGAGGUUAUGCAACUGGAUGGG&CCCGUCUAG----AUAAUAUCUUUC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a177_TRINITY_DN45995_c0_g1_240_TPlot.pdf
TRINITY_DN45995_c0_g1:478	si_a78	TRINITY_DN45995_c0_g1	467	487	478	-22.30	-14.50	0.650224215246637	9.5	3-17,485-471;19-20,469-468	1-2,487-486[UP5];18-18,470-470[SIL];21-21,467-467[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	GUCCUAAUGGUGAGAGAUACA&AUUGUUUUUCAUUAUUAAGAA	4	0.999999999580479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN45995_c0_g1_478_TPlot.pdf
TRINITY_DN459_c0_g1:1710	si_a110	TRINITY_DN459_c0_g1	1699	1719	1710	-27.80	-21.30	0.766187050359712	5	1-12,1719-1708;14-19,1706-1701	13-13,1707-1707[SIL];20-21,1700-1699[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	ACGACAGGGUUGUAUUUUAUC&GAUAAAAUACGAGCUUGUUUU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN459_c0_g1_1710_TPlot.pdf
TRINITY_DN459_c0_g1:3392	si_a627	TRINITY_DN459_c0_g1	3381	3402	3392	-29.50	-19.48	0.660338983050847	14.5	1-4,3402-3399;10-19,3392-3383	5-9,3398-3393[AILt];20-21,3382-3381[UP3]	..((((((((((......((((&))))-.....))))))))))..	UCAAGAUCGACAGACAUUCGCC&GGCG-UAUUAUGUCGAUUUUUU	2	0.999760969576219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN459_c0_g1_3392_TPlot.pdf
TRINITY_DN45_c0_g1:1721	si_s83	TRINITY_DN45_c0_g1	1710	1734	1721	-30.90	-20.10	0.650485436893204	13	2-3,1733-1732;5-8,1730-1727;9-21,1722-1710	1-1,1734-1734[UP5];4-4,1731-1731[SIL];x-x,1726-1723[BULt]	(((((((((((((....((((.((.&.)).))))----)))))))))))))	GAAGAAGAAGAAAUUUUGGAGUGGC&UUCUUUCC----UUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN45_c0_g1_1721_TPlot.pdf
TRINITY_DN45_c0_g1:2037	si_s891	TRINITY_DN45_c0_g1	2026	2047	2037	-29.60	-20.10	0.679054054054054	13	6-9,2042-2039;10-19,2037-2028	1-5,2047-2043[UP5];x-x,2038-2038[BULt];20-21,2027-2026[UP3]	..((((((((((.((((.....&.....))))-))))))))))..	AGGAAGAGAAAGUCCUAAAGUG&AUAAAUAGG-CUUUCUCUUCAA	2	0.991058844142749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN45_c0_g1_2037_TPlot.pdf
TRINITY_DN45_c0_g1:4078	si_a73	TRINITY_DN45_c0_g1	4067	4089	4078	-21.90	-14.30	0.65296803652968	10	1-6,4089-4084;7-8,4081-4080;10-21,4078-4067	x-x,4083-4082[BULt];9-9,4079-4079[SIL]	((((((((((((.((..((((((&))))))--)).))))))))))))	GAUGAUGAAGAGGAAAUUUUGGA&UUCAAA--UUGUUUUUCAUUAUU	4	0.999999999999967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN45_c0_g1_4078_TPlot.pdf
TRINITY_DN45_c0_g1:4469	si_a66	TRINITY_DN45_c0_g1	4459	4478	4469	-26.70	-17.70	0.662921348314607	9	1-10,4478-4469;16-21,4464-4459	11-15,4468-4465[AILq]	((((((....-((((((((((&)))))))))).....))))))	AGAAGCUUAC-GAAGGAAGCG&CGCUUCUUUCAAAUUGUUUUU	2	0.999999974557354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN45_c0_g1_4469_TPlot.pdf
TRINITY_DN45_c0_g1:4470	si_a65	TRINITY_DN45_c0_g1	4460	4479	4470	-27.70	-18.70	0.675090252707581	8	1-11,4479-4469;17-21,4464-4460	12-16,4468-4465[AILq]	(((((....-(((((((((((&))))))))))).....)))))	GAAGCUUAC-GAAGGAAGCGA&UCGCUUCUUUCAAAUUGUUUU	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN45_c0_g1_4470_TPlot.pdf
TRINITY_DN45_c0_g1:4476	si_a59	TRINITY_DN45_c0_g1	4465	4484	4476	-34.00	-23.00	0.676470588235294	7.5	1-2,4484-4483;4-17,4482-4469	3-3,x-x[BULq];18-21,4468-4465[UP3]	....((((((((((((((-((&)).))))))))))))))....	UUACGAAGGAAGCGAGUU-AC&GUCGACUCGCUUCUUUCAAAU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN45_c0_g1_4476_TPlot.pdf
TRINITY_DN45_c0_g1:4478	si_a57	TRINITY_DN45_c0_g1	4467	4486	4478	-36.60	-24.70	0.674863387978142	6.5	2-4,4485-4483;6-19,4482-4469	1-1,4486-4486[UP5];5-5,x-x[BULq];20-21,4468-4467[UP3]	..((((((((((((((-(((.&.))).))))))))))))))..	ACGAAGGAAGCGAGUU-ACUA&GAGUCGACUCGCUUCUUUCAA	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN45_c0_g1_4478_TPlot.pdf
TRINITY_DN45_c0_g1:4628	si_s806	TRINITY_DN45_c0_g1	4616	4637	4628	-28.60	-18.70	0.653846153846154	8.5	1-5,4637-4633;7-17,4631-4621;18-19,4619-4618	6-6,4632-4632[SIL];x-x,4620-4620[BULt];20-21,4617-4616[UP3]	..((.(((((((((((.(((((&))))).)))))))))))-))..	AUGAUGAAGGUGAUGAUGAUGA&UUAUCUUCGUUACCUUU-UCUU	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN45_c0_g1_4628_TPlot.pdf
TRINITY_DN45_c0_g1:4631	si_s803	TRINITY_DN45_c0_g1	4620	4640	4631	-26.00	-18.50	0.711538461538462	11	4-8,4637-4633;10-20,4631-4621	1-3,4640-4638[UP5];9-9,4632-4632[SIL];21-21,4620-4620[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	UGAAGGUGAUGAUGAUGAUGA&AUUUUAUCUUCGUUACCUUUU	2	0.999210483188021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN45_c0_g1_4631_TPlot.pdf
TRINITY_DN45_c0_g1:5127	si_a70	TRINITY_DN45_c0_g1	5116	5135	5127	-23.90	-16.40	0.686192468619247	9.5	1-7,5135-5129;10-18,5127-5119	8-9,5128-5128[AILq];19-21,5118-5116[UP3]	...(((((((((.-(((((((&)))))))..)))))))))...	AAAGAAGAACGAG-UGAAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999999843271129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN45_c0_g1_5127_TPlot.pdf
TRINITY_DN45_c0_g1:5394	si_s5	TRINITY_DN45_c0_g1	5383	5403	5394	-21.70	-15.10	0.695852534562212	14	6-20,5398-5384	1-5,5403-5399[UP5];21-21,5383-5383[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUGGUGGUGGUAGGUAUCUAA&UAUAUUACUUAUUAUUACUAU	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN45_c0_g1_5394_TPlot.pdf
TRINITY_DN45_c0_g1:5438	si_s87	TRINITY_DN45_c0_g1	5427	5448	5438	-32.90	-21.70	0.659574468085106	6.5	1-7,5448-5442;8-15,5440-5433;18-21,5430-5427	x-x,5441-5441[BULt];16-17,5432-5431[SIL]	((((..((((((((.(((((((&)))))))-))))))))..))))	AAGUCUAGAAGAGGAAGAGGAA&UUCCUUU-CUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN45_c0_g1_5438_TPlot.pdf
TRINITY_DN45_c0_g1:6143	si_s28	TRINITY_DN45_c0_g1	6132	6152	6143	-27.00	-18.20	0.674074074074074	8	2-3,6151-6150;5-17,6148-6136	1-1,6152-6152[UP5];4-4,6149-6149[SIL];18-21,6135-6132[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	CCUCAGAUUUAGUUGUAUUCG&UGAUUGCAACUAAAUCUUUAA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN45_c0_g1_6143_TPlot.pdf
TRINITY_DN45_c0_g1:6146	si_s25	TRINITY_DN45_c0_g1	6135	6155	6146	-27.10	-18.70	0.690036900369004	9	3-6,6153-6150;8-20,6148-6136	1-2,6155-6154[UP5];7-7,6149-6149[SIL];21-21,6135-6135[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	CAGAUUUAGUUGUAUUCGGGA&UAUUGAUUGCAACUAAAUCUU	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN45_c0_g1_6146_TPlot.pdf
TRINITY_DN45_c0_g1:6148	si_s23	TRINITY_DN45_c0_g1	6137	6157	6148	-27.00	-18.20	0.674074074074074	7	1-3,6157-6155;5-8,6153-6150;10-21,6148-6137	4-4,6154-6154[SIL];9-9,6149-6149[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	GAUUUAGUUGUAUUCGGGAUA&UAUAUUGAUUGCAACUAAAUC	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN45_c0_g1_6148_TPlot.pdf
TRINITY_DN45_c0_g1:6150	si_a341	TRINITY_DN45_c0_g1	6138	6159	6150	-27.80	-18.30	0.658273381294964	7	1-11,6159-6149;13-15,6147-6145;16-19,6143-6140	12-12,6148-6148[SIL];x-x,6144-6144[BULt];20-21,6139-6138[UP3]	..((((.(((.(((((((((((&))))))))))).)))-))))..	AUUUAGUUGUAUUCGGGAUAAG&CUUGUCCCGAAAAUA-UUAAUU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN45_c0_g1_6150_TPlot.pdf
TRINITY_DN45_c0_g1:6285	si_a23	TRINITY_DN45_c0_g1	6274	6294	6285	-22.80	-14.90	0.653508771929825	11.5	3-17,6292-6278	1-2,6294-6293[UP5];18-21,6277-6274[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACAAAGGACUGAGGAUAGAAU&UAUUUAUUUUUAGUUCUAAGA	4	0.999999923809806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN45_c0_g1_6285_TPlot.pdf
TRINITY_DN45_c0_g1:6286	si_a22	TRINITY_DN45_c0_g1	6275	6296	6286	-23.50	-16.40	0.697872340425532	9.5	1-6,6296-6291;7-18,6289-6278	x-x,6290-6290[BULt];19-21,6277-6275[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CAAAGGACUGAGGAUAGAAUAG&CUAUUU-AUUUUUAGUUCUAAG	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN45_c0_g1_6286_TPlot.pdf
TRINITY_DN45_c0_g1:6287	si_a21	TRINITY_DN45_c0_g1	6276	6297	6287	-24.30	-16.80	0.691358024691358	9	2-7,6296-6291;8-19,6289-6278	1-1,6297-6297[UP5];x-x,6290-6290[BULt];20-21,6277-6276[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	AAAGGACUGAGGAUAGAAUAGA&CCUAUUU-AUUUUUAGUUCUAA	2	0.991058844142749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN45_c0_g1_6287_TPlot.pdf
TRINITY_DN45_c0_g1:6291	si_a18	TRINITY_DN45_c0_g1	6279	6301	6291	-26.30	-18.90	0.718631178707224	8	2-4,6300-6298;5-10,6296-6291;11-21,6289-6279	1-1,6301-6301[UP5];x-x,6297-6297[BULt];x-x,6290-6290[BULt]	(((((((((((.((((((.(((.&.)))-))))))-)))))))))))	GGACUGAGGAUAGAAUAGAGCUC&AAGC-CUAUUU-AUUUUUAGUUC	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN45_c0_g1_6291_TPlot.pdf
TRINITY_DN45_c0_g1:6295	si_s793	TRINITY_DN45_c0_g1	6284	6303	6295	-30.50	-20.30	0.665573770491803	8	4-8,6300-6296;10-21,6295-6284	1-3,6303-6301[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	GAGGAUAGAAUA-GAGCUCAU&ACAAGCUCGUAUUUUAUCUUC	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN45_c0_g1_6295_TPlot.pdf
TRINITY_DN4600_c0_g1:1715	si_a761	TRINITY_DN4600_c0_g1	1704	1724	1715	-30.10	-23.20	0.770764119601329	10	4-20,1721-1705	1-3,1724-1722[UP5];21-21,1704-1704[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAUCAGUCGAGAGCCCGACCA&CCUUUGGGUUUUUGAUUGAUU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4600_c0_g1_1715_TPlot.pdf
TRINITY_DN4601_c0_g1:5725	si_s149	TRINITY_DN4601_c0_g1	5714	5734	5725	-37.20	-24.50	0.658602150537634	5	1-6,5734-5729;8-17,5727-5718;19-21,5716-5714	7-7,5728-5728[SIL];18-18,5717-5717[SIL]	(((.((((((((((.((((((&)))))).)))))))))).)))	CCAGGAGCUUUCUUAGGGUUU&AAACCCAAAGGAGGUUCAUGG	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s149_TRINITY_DN4601_c0_g1_5725_TPlot.pdf
TRINITY_DN46033_c0_g1:324	si_a121	TRINITY_DN46033_c0_g1	313	333	324	-29.30	-20.00	0.68259385665529	6.5	3-14,331-320;16-21,318-313	1-2,333-332[UP5];15-15,319-319[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GCUAUUCCUGUAAAGCAAGGU&AGCUUGUUUUAUAGCAAUAGU	1	0.0422028598228541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN46033_c0_g1_324_TPlot.pdf
TRINITY_DN4603_c0_g1:1151	si_a358	TRINITY_DN4603_c0_g1	1140	1160	1151	-29.10	-20.50	0.70446735395189	7.5	3-17,1158-1144;19-20,1142-1141	1-2,1160-1159[UP5];18-18,1143-1143[SIL];21-21,1140-1140[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	AGAGCUGAUCAAGAUAGGAGU&AAUUCUAUUUUGAUCGGAUCA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN4603_c0_g1_1151_TPlot.pdf
TRINITY_DN4603_c0_g1:1154	si_a355	TRINITY_DN4603_c0_g1	1143	1163	1154	-26.80	-19.10	0.712686567164179	12.5	6-20,1158-1144	1-5,1163-1159[UP5];21-21,1143-1143[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GCUGAUCAAGAUAGGAGUGGG&AUUAAUUCUAUUUUGAUCGGA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN4603_c0_g1_1154_TPlot.pdf
TRINITY_DN46056_c0_g1:38	si_a21	TRINITY_DN46056_c0_g1	26	50	38	-24.30	-15.90	0.654320987654321	11.5	1-9,50-42;10-14,38-34;15-19,32-28	x-x,41-39[BULt];x-x,33-33[BULt];20-21,27-26[UP3]	..(((((.(((((...(((((((((&)))))))))---)))))-)))))..	GAAGAGCAUAAAAAUUGUGAAUAGG&CCUAUUUAU---UUUUA-GUUCUAA	4	0.999999994685875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN46056_c0_g1_38_TPlot.pdf
TRINITY_DN46062_c0_g1:201	si_s795	TRINITY_DN46062_c0_g1	190	212	201	-30.30	-20.40	0.673267326732673	9.5	3-7,210-206;8-9,204-203;10-21,201-190	1-2,212-211[UP5];x-x,205-205[BULt];x-x,202-202[BULt]	((((((((((((.((.(((((..&..)))))-))-))))))))))))	ACGAAGAUGAGACUACCGAGUCU&AAGCUCG-UA-UUUUAUCUUCGU	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN46062_c0_g1_201_TPlot.pdf
TRINITY_DN46062_c0_g1:224	si_s89	TRINITY_DN46062_c0_g1	206	233	224	-35.30	-26.00	0.736543909348442	11.5	1-10,233-224;11-18,220-213;19-21,208-206	x-x,223-221[BULt];x-x,212-209[BULt]	(((....((((((((...((((((((((&))))))))))---))))))))----)))	CGAGUCUAGCGGAGACGAAGAGGAAAGG&CCUUUCUUCU---UCUUCGCU----UCG	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN46062_c0_g1_224_TPlot.pdf
TRINITY_DN46062_c0_g1:44	si_s865	TRINITY_DN46062_c0_g1	32	53	44	-37.80	-24.70	0.653439153439153	11.5	5-11,49-43;12-15,41-38;17-21,36-32	1-4,53-50[UP5];x-x,42-42[BULt];16-16,37-37[SIL]	(((((.((((.(((((((....&....)))))))-)))).)))))	GUUCUUGGACUCGGUGGGGCAA&UAGACCUACCG-GUCUUAGAAC	0	0.0251923881248493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s865_TRINITY_DN46062_c0_g1_44_TPlot.pdf
TRINITY_DN4606_c0_g1:10103	si_a785	TRINITY_DN4606_c0_g1	10092	10113	10103	-25.90	-17.00	0.656370656370656	10.5	1-7,10113-10107;10-20,10103-10093	8-9,10106-10104[AILt];21-21,10092-10092[UP3]	.(((((((((((...(((((((&)))))))-..))))))))))).	AAAAGUAGAGGACGAAGGAGAG&CUCUUCU-AUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4606_c0_g1_10103_TPlot.pdf
TRINITY_DN4606_c0_g1:10104	si_a784	TRINITY_DN4606_c0_g1	10093	10114	10104	-24.70	-17.20	0.696356275303644	10	2-8,10113-10107;11-21,10103-10093	1-1,10114-10114[UP5];9-10,10106-10104[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	AAAGUAGAGGACGAAGGAGAGG&ACUCUUCU-AUUUUUCUAUUUU	3	0.999999999204775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4606_c0_g1_10104_TPlot.pdf
TRINITY_DN4606_c0_g1:10105	si_a783	TRINITY_DN4606_c0_g1	10094	10115	10105	-24.70	-16.30	0.659919028340081	11.5	3-9,10113-10107;12-21,10103-10094	1-2,10115-10114[UP5];10-11,10106-10104[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	AAGUAGAGGACGAAGGAGAGGC&AACUCUUCU-AUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4606_c0_g1_10105_TPlot.pdf
TRINITY_DN4606_c0_g1:10616	si_s42	TRINITY_DN4606_c0_g1	10604	10625	10616	-24.90	-16.70	0.670682730923695	7.5	1-9,10625-10617;11-16,10615-10610;17-19,10608-10606	10-10,10616-10616[SIL];x-x,10609-10609[BULt];20-21,10605-10604[UP3]	..(((.((((((.(((((((((&))))))))).))))))-)))..	ACGAAGGUCCAGCUAUUGAAGA&UCUUUAAUAAUUGGAU-UUCAA	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN4606_c0_g1_10616_TPlot.pdf
TRINITY_DN4606_c0_g1:10617	si_s41	TRINITY_DN4606_c0_g1	10605	10626	10617	-25.00	-16.70	0.668	7.5	2-10,10625-10617;12-17,10615-10610;18-20,10608-10606	1-1,10626-10626[UP5];11-11,10616-10616[SIL];x-x,10609-10609[BULt];21-21,10605-10605[UP3]	.(((.((((((.(((((((((.&.))))))))).))))))-))).	CGAAGGUCCAGCUAUUGAAGAA&AUCUUUAAUAAUUGGAU-UUCA	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN4606_c0_g1_10617_TPlot.pdf
TRINITY_DN4606_c0_g1:10620	si_s38	TRINITY_DN4606_c0_g1	10609	10629	10620	-22.70	-15.60	0.687224669603524	10.5	5-13,10625-10617;15-21,10615-10609	1-4,10629-10626[UP5];14-14,10616-10616[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GGUCCAGCUAUUGAAGAAAUA&UAAAUCUUUAAUAAUUGGAUU	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN4606_c0_g1_10620_TPlot.pdf
TRINITY_DN4606_c0_g1:10784	si_s899	TRINITY_DN4606_c0_g1	10773	10794	10784	-28.30	-20.80	0.734982332155477	6	1-7,10794-10788;8-13,10786-10781;16-21,10778-10773	x-x,10787-10787[BULt];14-15,10780-10779[SIL]	((((((..((((((.(((((((&)))))))-))))))..))))))	AGUUGAUUUUGAAGAAGAAGGU&GCUUUCU-CUUCAAUUUCAAUU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4606_c0_g1_10784_TPlot.pdf
TRINITY_DN4606_c0_g1:10785	si_s898	TRINITY_DN4606_c0_g1	10774	10795	10785	-30.70	-20.30	0.661237785016287	7.5	2-8,10794-10788;9-14,10786-10781;17-21,10778-10774	1-1,10795-10795[UP5];x-x,10787-10787[BULt];15-16,10780-10779[SIL]	(((((..((((((.(((((((.&.)))))))-))))))..)))))	GUUGAUUUUGAAGAAGAAGGUA&GGCUUUCU-CUUCAAUUUCAAU	3	0.999999977554128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4606_c0_g1_10785_TPlot.pdf
TRINITY_DN4606_c0_g1:1097	si_s805	TRINITY_DN4606_c0_g1	1086	1106	1097	-28.60	-18.80	0.657342657342657	6.5	1-8,1106-1099;10-11,1097-1096;13-20,1094-1087	9-9,1098-1098[SIL];12-12,1095-1095[SIL];21-21,1086-1086[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	CGAAAGGGUCACAAAGAUGAA&UUUAUCUUCGUUACCUUUUCU	4	0.999999999998439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4606_c0_g1_1097_TPlot.pdf
TRINITY_DN4606_c0_g1:1098	si_s804	TRINITY_DN4606_c0_g1	1087	1107	1098	-27.90	-19.20	0.688172043010753	4.5	1-9,1107-1099;11-12,1097-1096;14-21,1094-1087	10-10,1098-1098[SIL];13-13,1095-1095[SIL]	((((((((.((.(((((((((&))))))))).)).))))))))	GAAAGGGUCACAAAGAUGAAA&UUUUAUCUUCGUUACCUUUUC	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4606_c0_g1_1098_TPlot.pdf
TRINITY_DN4606_c0_g1:1136	si_s83	TRINITY_DN4606_c0_g1	1125	1145	1136	-30.90	-22.00	0.711974110032362	5.5	1-6,1145-1140;8-20,1138-1126	7-7,1139-1139[SIL];21-21,1125-1125[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	AGAGAAGAAGAGGGUAAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999999134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4606_c0_g1_1136_TPlot.pdf
TRINITY_DN4606_c0_g1:11611	si_s68	TRINITY_DN4606_c0_g1	11599	11620	11611	-23.10	-18.40	0.796536796536796	5.5	1-10,11620-11611;12-14,11609-11607;15-21,11605-11599	11-11,11610-11610[SIL];x-x,11606-11606[BULt]	(((((((.(((.((((((((((&)))))))))).)))-)))))))	GAAGAGACAGAUGUAGAAGUUG&CAACUUCUAUUUUU-UUUCUUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4606_c0_g1_11611_TPlot.pdf
TRINITY_DN4606_c0_g1:11801	si_a20	TRINITY_DN4606_c0_g1	11789	11811	11801	-26.70	-20.00	0.749063670411985	6.5	1-4,11811-11808;6-18,11805-11793;19-21,11791-11789	5-5,11807-11806[AILt];x-x,11792-11792[BULt]	(((.(((((((((((((..((((&))))-.)))))))))))))-)))	UAGUAGCUAAAAAUAGAGAAGGC&GCCU-AUUUAUUUUUAGUU-CUA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4606_c0_g1_11801_TPlot.pdf
TRINITY_DN4606_c0_g1:11802	si_a19	TRINITY_DN4606_c0_g1	11790	11812	11802	-27.00	-18.60	0.688888888888889	7.5	2-5,11811-11808;7-19,11805-11793;20-21,11791-11790	1-1,11812-11812[UP5];6-6,11807-11806[AILt];x-x,11792-11792[BULt]	((.(((((((((((((..((((.&.))))-.)))))))))))))-))	AGUAGCUAAAAAUAGAGAAGGCG&AGCCU-AUUUAUUUUUAGUU-CU	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4606_c0_g1_11802_TPlot.pdf
TRINITY_DN4606_c0_g1:1363	si_s81	TRINITY_DN4606_c0_g1	1352	1372	1363	-28.90	-19.70	0.681660899653979	8	3-8,1370-1365;10-20,1363-1353	1-2,1372-1371[UP5];9-9,1364-1364[SIL];21-21,1352-1352[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGAAGAAGAGGGUAAAGAACC&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4606_c0_g1_1363_TPlot.pdf
TRINITY_DN4606_c0_g1:1364	si_s80	TRINITY_DN4606_c0_g1	1353	1373	1364	-28.20	-19.30	0.684397163120567	8.5	4-9,1370-1365;11-21,1363-1353	1-3,1373-1371[UP5];10-10,1364-1364[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GAAGAAGAGGGUAAAGAACCA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4606_c0_g1_1364_TPlot.pdf
TRINITY_DN4606_c0_g1:14010	si_a759	TRINITY_DN4606_c0_g1	13999	14019	14010	-32.60	-24.50	0.751533742331288	4.5	1-17,14019-14003;19-20,14001-14000	18-18,14002-14002[SIL];21-21,13999-13999[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	ACAUUCGAAAAUCUAAAGGAG&CUCCUUUGGGUUUUUGAUUGA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN4606_c0_g1_14010_TPlot.pdf
TRINITY_DN4606_c0_g1:14011	si_a758	TRINITY_DN4606_c0_g1	14000	14020	14011	-34.00	-24.90	0.732352941176471	4.5	2-18,14019-14003;20-21,14001-14000	1-1,14020-14020[UP5];19-19,14002-14002[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	CAUUCGAAAAUCUAAAGGAGA&CCUCCUUUGGGUUUUUGAUUG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN4606_c0_g1_14011_TPlot.pdf
TRINITY_DN4606_c0_g1:14012	si_a757	TRINITY_DN4606_c0_g1	14001	14021	14012	-33.10	-23.20	0.700906344410876	7.5	3-19,14019-14003	1-2,14021-14020[UP5];20-21,14002-14001[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUUCGAAAAUCUAAAGGAGAA&ACCUCCUUUGGGUUUUUGAUU	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4606_c0_g1_14012_TPlot.pdf
TRINITY_DN4606_c0_g1:14013	si_a756	TRINITY_DN4606_c0_g1	14002	14022	14013	-33.10	-23.20	0.700906344410876	8	4-20,14019-14003	1-3,14022-14020[UP5];21-21,14002-14002[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUCGAAAAUCUAAAGGAGAAG&AACCUCCUUUGGGUUUUUGAU	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4606_c0_g1_14013_TPlot.pdf
TRINITY_DN4606_c0_g1:14014	si_a755	TRINITY_DN4606_c0_g1	14003	14023	14014	-34.90	-23.10	0.66189111747851	9	5-21,14019-14003	1-4,14023-14020[UP5]	(((((((((((((((((....&....)))))))))))))))))	UCGAAAAUCUAAAGGAGAAGA&GAACCUCCUUUGGGUUUUUGA	4	0.999950241653235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN4606_c0_g1_14014_TPlot.pdf
TRINITY_DN4606_c0_g1:1492	si_a498	TRINITY_DN4606_c0_g1	1481	1501	1492	-33.50	-22.20	0.662686567164179	5	1-4,1501-1498;6-16,1496-1486;18-20,1484-1482	5-5,1497-1497[SIL];17-17,1485-1485[SIL];21-21,1481-1481[UP3]	.(((.(((((((((((.((((&)))).))))))))))).))).	AAAGAAAGACGAAAAGGGACA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999999998675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4606_c0_g1_1492_TPlot.pdf
TRINITY_DN4606_c0_g1:1493	si_a497	TRINITY_DN4606_c0_g1	1482	1502	1493	-32.00	-23.10	0.721875	4	1-5,1502-1498;7-17,1496-1486;19-21,1484-1482	6-6,1497-1497[SIL];18-18,1485-1485[SIL]	(((.(((((((((((.(((((&))))).))))))))))).)))	AAGAAAGACGAAAAGGGACAU&AUGUCGUUUUUCGUCUUCCUU	4	0.999954185126487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4606_c0_g1_1493_TPlot.pdf
TRINITY_DN4606_c0_g1:1494	si_a496	TRINITY_DN4606_c0_g1	1483	1503	1494	-32.40	-23.30	0.719135802469136	4	1-6,1503-1498;8-18,1496-1486;20-21,1484-1483	7-7,1497-1497[SIL];19-19,1485-1485[SIL]	((.(((((((((((.((((((&)))))).))))))))))).))	AGAAAGACGAAAAGGGACAUA&UAUGUCGUUUUUCGUCUUCCU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN4606_c0_g1_1494_TPlot.pdf
TRINITY_DN4606_c0_g1:1500	si_a490	TRINITY_DN4606_c0_g1	1489	1510	1500	-28.10	-18.70	0.665480427046263	6.5	2-4,1509-1507;6-12,1504-1498;14-21,1496-1489	1-1,1510-1510[UP5];5-5,1506-1505[AILt];13-13,1497-1497[SIL]	((((((((.(((((((..(((.&.)))-.))))))).))))))))	ACGAAAAGGGACAUAUAACUAA&AUAG-AAUAUGUCGUUUUUCGU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN4606_c0_g1_1500_TPlot.pdf
TRINITY_DN4606_c0_g1:1850	si_a228	TRINITY_DN4606_c0_g1	1839	1861	1850	-27.10	-18.00	0.664206642066421	8	1-7,1861-1855;8-17,1852-1843	x-x,1854-1853[BULt];18-21,1842-1839[UP3]	....((((((((((..(((((((&)))))))--))))))))))....	ACUGUGAUUAUAGAAGAACAUGA&UCAUGUU--UCUAUAAUCAAUUC	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN4606_c0_g1_1850_TPlot.pdf
TRINITY_DN4606_c0_g1:1851	si_a227	TRINITY_DN4606_c0_g1	1840	1862	1851	-26.80	-18.10	0.675373134328358	8	2-8,1861-1855;9-18,1852-1843	1-1,1862-1862[UP5];x-x,1854-1853[BULt];19-21,1842-1840[UP3]	...((((((((((..(((((((.&.)))))))--))))))))))...	CUGUGAUUAUAGAAGAACAUGAC&CUCAUGUU--UCUAUAAUCAAUU	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN4606_c0_g1_1851_TPlot.pdf
TRINITY_DN4606_c0_g1:1852	si_a226	TRINITY_DN4606_c0_g1	1841	1863	1852	-27.60	-18.10	0.655797101449275	9	3-9,1861-1855;10-19,1852-1843	1-2,1863-1862[UP5];x-x,1854-1853[BULt];20-21,1842-1841[UP3]	..((((((((((..(((((((..&..)))))))--))))))))))..	UGUGAUUAUAGAAGAACAUGACA&ACUCAUGUU--UCUAUAAUCAAU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN4606_c0_g1_1852_TPlot.pdf
TRINITY_DN4606_c0_g1:1855	si_a225	TRINITY_DN4606_c0_g1	1842	1864	1855	-27.50	-18.10	0.658181818181818	10	4-10,1861-1855;11-20,1852-1843	1-3,1864-1862[UP5];x-x,1854-1853[BULt];21-21,1842-1842[UP3]	.((((((((((..(((((((...&...)))))))--)))))))))).	GUGAUUAUAGAAGAACAUGACAU&AACUCAUGUU--UCUAUAAUCAA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN4606_c0_g1_1855_TPlot.pdf
TRINITY_DN4606_c0_g1:1856	si_a224	TRINITY_DN4606_c0_g1	1843	1865	1856	-27.40	-17.90	0.653284671532847	11	5-11,1861-1855;12-21,1852-1843	1-4,1865-1862[UP5];x-x,1854-1853[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	UGAUUAUAGAAGAACAUGACAUA&AAACUCAUGUU--UCUAUAAUCA	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN4606_c0_g1_1856_TPlot.pdf
TRINITY_DN4606_c0_g1:2059	si_s87	TRINITY_DN4606_c0_g1	2050	2068	2059	-32.90	-22.90	0.696048632218845	4.5	1-14,2068-2055;17-20,2054-2051	15-16,x-x[BULq];21-21,2050-2050[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	CAGUG--GAAGAAGAAGGGAA&UUCCUUUCUUCUUCUUCGCUU	2	0.99999988092552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4606_c0_g1_2059_TPlot.pdf
TRINITY_DN4606_c0_g1:2060	si_s86	TRINITY_DN4606_c0_g1	2051	2069	2060	-32.90	-23.80	0.723404255319149	3.5	1-15,2069-2055;18-21,2054-2051	16-17,x-x[BULq]	((((--(((((((((((((((&)))))))))))))))..))))	AGUG--GAAGAAGAAGGGAAA&UUUCCUUUCUUCUUCUUCGCU	2	0.999786299500334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4606_c0_g1_2060_TPlot.pdf
TRINITY_DN4606_c0_g1:2061	si_s85	TRINITY_DN4606_c0_g1	2050	2070	2061	-33.80	-25.80	0.763313609467456	4.5	1-17,2070-2054;19-19,2052-2052	18-18,2053-2053[SIL];20-21,2051-2050[UP3]	..(.(((((((((((((((((&))))))))))))))))).)..	CAGUGGAAGAAGAAGGGAAAG&CUUUCCUUUCUUCUUCUUCGC	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4606_c0_g1_2061_TPlot.pdf
TRINITY_DN4606_c0_g1:2062	si_s84	TRINITY_DN4606_c0_g1	2051	2071	2062	-32.30	-25.80	0.798761609907121	4.5	2-18,2070-2054;20-20,2052-2052	1-1,2071-2071[UP5];19-19,2053-2053[SIL];21-21,2051-2051[UP3]	.(.(((((((((((((((((.&.))))))))))))))))).).	AGUGGAAGAAGAAGGGAAAGU&UCUUUCCUUUCUUCUUCUUCG	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4606_c0_g1_2062_TPlot.pdf
TRINITY_DN4606_c0_g1:2063	si_s83	TRINITY_DN4606_c0_g1	2052	2072	2063	-30.90	-25.40	0.822006472491909	5.5	3-19,2070-2054;21-21,2052-2052	1-2,2072-2071[UP5];20-20,2053-2053[SIL]	(.(((((((((((((((((..&..))))))))))))))))).)	GUGGAAGAAGAAGGGAAAGUU&UUCUUUCCUUUCUUCUUCUUC	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4606_c0_g1_2063_TPlot.pdf
TRINITY_DN4606_c0_g1:2064	si_s82	TRINITY_DN4606_c0_g1	2053	2073	2064	-28.90	-25.10	0.868512110726644	7.5	4-20,2070-2054	1-3,2073-2071[UP5];21-21,2053-2053[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGGAAGAAGAAGGGAAAGUUC&UUUCUUUCCUUUCUUCUUCUU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_2064_TPlot.pdf
TRINITY_DN4606_c0_g1:2066	si_s80	TRINITY_DN4606_c0_g1	2055	2075	2066	-28.20	-24.00	0.851063829787234	10	6-21,2070-2055	1-5,2075-2071[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGAAGAAGGGAAAGUUCCU&UUUUUCUUUCCUUUCUUCUUC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4606_c0_g1_2066_TPlot.pdf
TRINITY_DN4606_c0_g1:2067	si_s79	TRINITY_DN4606_c0_g1	2056	2076	2067	-26.20	-20.80	0.793893129770992	11.5	7-21,2070-2056	1-6,2076-2071[UP5]	(((((((((((((((......&......)))))))))))))))	AAGAAGAAGGGAAAGUUCCUC&UUUUUUCUUUCCUUUCUUCUU	2	0.999543407832817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4606_c0_g1_2067_TPlot.pdf
TRINITY_DN4606_c0_g1:2068	si_s78	TRINITY_DN4606_c0_g1	2057	2077	2068	-26.20	-19.90	0.759541984732824	13.5	8-21,2070-2057	1-7,2077-2071[UP5]	((((((((((((((.......&.......))))))))))))))	AGAAGAAGGGAAAGUUCCUCA&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999768692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4606_c0_g1_2068_TPlot.pdf
TRINITY_DN4606_c0_g1:2069	si_s77	TRINITY_DN4606_c0_g1	2058	2078	2069	-25.50	-18.60	0.729411764705882	15.5	9-21,2070-2058	1-8,2078-2071[UP5]	(((((((((((((........&........)))))))))))))	GAAGAAGGGAAAGUUCCUCAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4606_c0_g1_2069_TPlot.pdf
TRINITY_DN4606_c0_g1:2070	si_s76	TRINITY_DN4606_c0_g1	2059	2079	2070	-23.60	-15.40	0.652542372881356	17.5	10-21,2070-2059	1-9,2079-2071[UP5]	((((((((((((.........&.........))))))))))))	AAGAAGGGAAAGUUCCUCAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4606_c0_g1_2070_TPlot.pdf
TRINITY_DN4606_c0_g1:2101	si_s87	TRINITY_DN4606_c0_g1	2090	2111	2101	-32.90	-22.70	0.689969604863222	8	1-4,2111-2108;6-18,2105-2093	5-5,2107-2106[AILt];19-21,2092-2090[UP3]	...(((((((((((((..((((&))))-.)))))))))))))...	AAUCGAAGAGGAAGAACUGGAA&UUCC-UUUCUUCUUCUUCGCUU	3	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4606_c0_g1_2101_TPlot.pdf
TRINITY_DN4606_c0_g1:2102	si_s86	TRINITY_DN4606_c0_g1	2091	2112	2102	-32.90	-23.60	0.717325227963526	6.5	1-5,2112-2108;7-19,2105-2093	6-6,2107-2106[AILt];20-21,2092-2091[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	AUCGAAGAGGAAGAACUGGAAA&UUUCC-UUUCUUCUUCUUCGCU	3	0.999999849489981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4606_c0_g1_2102_TPlot.pdf
TRINITY_DN4606_c0_g1:2103	si_s85	TRINITY_DN4606_c0_g1	2092	2113	2103	-33.80	-23.80	0.70414201183432	6.5	2-6,2112-2108;8-20,2105-2093	1-1,2113-2113[UP5];7-7,2107-2106[AILt];21-21,2092-2092[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	UCGAAGAGGAAGAACUGGAAAA&CUUUCC-UUUCUUCUUCUUCGC	3	0.999999903584718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4606_c0_g1_2103_TPlot.pdf
TRINITY_DN4606_c0_g1:2104	si_s84	TRINITY_DN4606_c0_g1	2093	2114	2104	-32.30	-23.80	0.736842105263158	7.5	3-7,2112-2108;9-21,2105-2093	1-2,2114-2113[UP5];8-8,2107-2106[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	CGAAGAGGAAGAACUGGAAAAA&UCUUUCC-UUUCUUCUUCUUCG	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4606_c0_g1_2104_TPlot.pdf
TRINITY_DN4606_c0_g1:2105	si_s83	TRINITY_DN4606_c0_g1	2094	2117	2105	-30.90	-22.50	0.728155339805825	8.5	1-5,2117-2113;6-8,2110-2108;10-21,2105-2094	x-x,2112-2111[BULt];9-9,2107-2106[AILt]	((((((((((((..(((..(((((&)))))--)))-.))))))))))))	GAAGAGGAAGAACUGGAAAAAGAA&UUCUU--UCC-UUUCUUCUUCUUC	3	0.999999998540366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4606_c0_g1_2105_TPlot.pdf
TRINITY_DN4606_c0_g1:2106	si_s82	TRINITY_DN4606_c0_g1	2095	2118	2106	-28.90	-20.10	0.695501730103806	8.5	1-6,2118-2113;7-9,2110-2108;11-21,2105-2095	x-x,2112-2111[BULt];10-10,2107-2106[AILt]	(((((((((((..(((..((((((&))))))--)))-.)))))))))))	AAGAGGAAGAACUGGAAAAAGAAA&UUUCUU--UCC-UUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_2106_TPlot.pdf
TRINITY_DN4606_c0_g1:2184	si_s82	TRINITY_DN4606_c0_g1	2170	2193	2184	-28.90	-19.40	0.671280276816609	11.5	1-11,2193-2183;12-14,2178-2176;16-21,2175-2170	x-x,2182-2179[BULt];15-15,x-x[BULq]	((((((-(((....(((((((((((&)))))))))))----))).))))))	AGGAAG-AGAAACCAAGGGAAGAGA&UUUCUUUCCUU----UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_2184_TPlot.pdf
TRINITY_DN4606_c0_g1:2186	si_s80	TRINITY_DN4606_c0_g1	2169	2195	2186	-28.20	-19.20	0.680851063829787	10	1-13,2195-2183;14-20,2176-2170	x-x,2182-2177[BULt];21-21,2169-2169[UP3]	.(((((((......(((((((((((((&)))))))))))))------))))))).	AAGGAAGAGAAACCAAGGGAAGAGAAG&UUUUUCUUUCCUU------UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4606_c0_g1_2186_TPlot.pdf
TRINITY_DN4606_c0_g1:2187	si_s79	TRINITY_DN4606_c0_g1	2170	2196	2187	-26.20	-19.30	0.736641221374046	10.5	2-14,2195-2183;15-21,2176-2170	1-1,2196-2196[UP5];x-x,2182-2177[BULt]	(((((((......(((((((((((((.&.)))))))))))))------)))))))	AGGAAGAGAAACCAAGGGAAGAGAAGC&UUUUUUCUUUCCUU------UCUUCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4606_c0_g1_2187_TPlot.pdf
TRINITY_DN4606_c0_g1:2188	si_s78	TRINITY_DN4606_c0_g1	2171	2197	2188	-26.20	-18.50	0.706106870229008	12.5	3-15,2195-2183;16-21,2176-2171	1-2,2197-2196[UP5];x-x,2182-2177[BULt]	((((((......(((((((((((((..&..)))))))))))))------))))))	GGAAGAGAAACCAAGGGAAGAGAAGCC&UUUUUUUCUUUCCUU------UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4606_c0_g1_2188_TPlot.pdf
TRINITY_DN4606_c0_g1:2189	si_s77	TRINITY_DN4606_c0_g1	2172	2198	2189	-25.50	-17.40	0.68235294117647	14	4-16,2195-2183;17-21,2176-2172	1-3,2198-2196[UP5];x-x,2182-2177[BULt]	(((((......(((((((((((((...&...)))))))))))))------)))))	GAAGAGAAACCAAGGGAAGAGAAGCCA&UUUUUUUUCUUUCCUU------UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4606_c0_g1_2189_TPlot.pdf
TRINITY_DN4606_c0_g1:2251	si_s894	TRINITY_DN4606_c0_g1	2240	2261	2251	-29.10	-19.20	0.65979381443299	9	1-7,2261-2255;8-16,2253-2245	x-x,2254-2254[BULt];17-21,2244-2240[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	CCUUAGAAGAGAAAUGUCUGUU&AAUAGGC-UUUCUCUUCAAUUU	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4606_c0_g1_2251_TPlot.pdf
TRINITY_DN4606_c0_g1:2252	si_s893	TRINITY_DN4606_c0_g1	2241	2262	2252	-29.10	-19.40	0.666666666666667	9	2-8,2261-2255;9-17,2253-2245	1-1,2262-2262[UP5];x-x,2254-2254[BULt];18-21,2244-2241[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	CUUAGAAGAGAAAUGUCUGUUC&AAAUAGGC-UUUCUCUUCAAUU	3	0.999999787662861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4606_c0_g1_2252_TPlot.pdf
TRINITY_DN4606_c0_g1:2253	si_s892	TRINITY_DN4606_c0_g1	2242	2263	2253	-29.50	-19.40	0.657627118644068	10	3-9,2261-2255;10-18,2253-2245	1-2,2263-2262[UP5];x-x,2254-2254[BULt];19-21,2244-2242[UP3]	...(((((((((.(((((((..&..)))))))-)))))))))...	UUAGAAGAGAAAUGUCUGUUCU&UAAAUAGGC-UUUCUCUUCAAU	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4606_c0_g1_2253_TPlot.pdf
TRINITY_DN4606_c0_g1:2256	si_s890	TRINITY_DN4606_c0_g1	2244	2265	2256	-29.50	-19.40	0.657627118644068	12	5-11,2261-2255;12-20,2253-2245	1-4,2265-2262[UP5];x-x,2254-2254[BULt];21-21,2244-2244[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	AGAAGAGAAAUGUCUGUUCUCA&AAUAAAUAGGC-UUUCUCUUCA	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4606_c0_g1_2256_TPlot.pdf
TRINITY_DN4606_c0_g1:2569	si_s629	TRINITY_DN4606_c0_g1	2558	2581	2569	-34.60	-23.20	0.670520231213873	13	2-6,2580-2576;7-19,2572-2560	1-1,2581-2581[UP5];x-x,2575-2573[BULt];20-21,2559-2558[UP3]	..(((((((((((((...(((((.&.)))))---)))))))))))))..	ACGGCGCCUACGAGAUAAGGAUUU&CGAUCU---UUUCGUAGGCGUUUG	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN4606_c0_g1_2569_TPlot.pdf
TRINITY_DN4606_c0_g1:2570	si_s628	TRINITY_DN4606_c0_g1	2559	2582	2570	-35.40	-23.20	0.655367231638418	14	3-7,2580-2576;8-20,2572-2560	1-2,2582-2581[UP5];x-x,2575-2573[BULt];21-21,2559-2559[UP3]	.(((((((((((((...(((((..&..)))))---))))))))))))).	CGGCGCCUACGAGAUAAGGAUUUA&GCGAUCU---UUUCGUAGGCGUUU	3	0.99999899076026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN4606_c0_g1_2570_TPlot.pdf
TRINITY_DN4606_c0_g1:2579	si_a549	TRINITY_DN4606_c0_g1	2568	2588	2579	-29.50	-19.60	0.664406779661017	8.5	3-8,2586-2581;11-20,2578-2569	1-2,2588-2587[UP5];9-10,2580-2579[SIL];21-21,2568-2568[UP3]	.((((((((((..((((((..&..))))))..)))))))))).	CGAGAUAAGGAUUUAGAUUUA&UCAAUCUAUUUCUUUAUCUCC	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN4606_c0_g1_2579_TPlot.pdf
TRINITY_DN4606_c0_g1:2580	si_a548	TRINITY_DN4606_c0_g1	2569	2589	2580	-27.20	-19.60	0.720588235294118	9.5	4-9,2586-2581;12-21,2578-2569	1-3,2589-2587[UP5];10-11,2580-2579[SIL]	((((((((((..((((((...&...))))))..))))))))))	GAGAUAAGGAUUUAGAUUUAA&UUCAAUCUAUUUCUUUAUCUC	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN4606_c0_g1_2580_TPlot.pdf
TRINITY_DN4606_c0_g1:2817	si_s82	TRINITY_DN4606_c0_g1	2806	2827	2817	-28.90	-20.00	0.69204152249135	9.5	5-8,2823-2820;9-21,2818-2806	1-4,2827-2824[UP5];x-x,2819-2819[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	AAGAAGAGGAAAGCGAAAAACC&UUUCUUUC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_2817_TPlot.pdf
TRINITY_DN4606_c0_g1:2818	si_s81	TRINITY_DN4606_c0_g1	2807	2828	2818	-28.90	-19.20	0.664359861591695	11.5	6-9,2823-2820;10-21,2818-2807	1-5,2828-2824[UP5];x-x,2819-2819[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	AGAAGAGGAAAGCGAAAAACCU&UUUUCUUUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4606_c0_g1_2818_TPlot.pdf
TRINITY_DN4606_c0_g1:2881	si_s84	TRINITY_DN4606_c0_g1	2870	2894	2881	-32.30	-22.80	0.705882352941177	12	1-3,2894-2892;5-9,2890-2886;10-20,2881-2871	4-4,2891-2891[SIL];x-x,2885-2882[BULt];21-21,2870-2870[UP3]	.(((((((((((....(((((.(((&))).)))))----))))))))))).	GGAAGAAGAGGACGAAAAGGACAGA&UCUUUCCUU----UCUUCUUCUUCG	3	0.999999999376282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4606_c0_g1_2881_TPlot.pdf
TRINITY_DN4606_c0_g1:2884	si_a498	TRINITY_DN4606_c0_g1	2867	2892	2884	-33.50	-21.90	0.653731343283582	9.5	1-4,2892-2889;6-15,2888-2879;16-21,2872-2867	5-5,x-x[BULq];x-x,2878-2873[BULt]	((((((......((((((((((-((((&)))).))))))))))------))))))	CAAGGAAGAAGAGGACGAAAAG-GACA&UGUCGUUUUUCGUCU------UCCUUG	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4606_c0_g1_2884_TPlot.pdf
TRINITY_DN4606_c0_g1:2886	si_s83	TRINITY_DN4606_c0_g1	2871	2895	2886	-30.90	-22.90	0.741100323624595	10.5	1-4,2895-2892;6-10,2890-2886;11-21,2881-2871	5-5,2891-2891[SIL];x-x,2885-2882[BULt]	(((((((((((....(((((.((((&)))).)))))----)))))))))))	GAAGAAGAGGACGAAAAGGACAGAA&UUCUUUCCUU----UCUUCUUCUUC	3	0.999999886634672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4606_c0_g1_2886_TPlot.pdf
TRINITY_DN4606_c0_g1:2887	si_s82	TRINITY_DN4606_c0_g1	2872	2896	2887	-28.90	-19.90	0.688581314878893	11.5	2-5,2895-2892;7-11,2890-2886;12-21,2881-2872	1-1,2896-2896[UP5];6-6,2891-2891[SIL];x-x,2885-2882[BULt]	((((((((((....(((((.((((.&.)))).)))))----))))))))))	AAGAAGAGGACGAAAAGGACAGAAU&UUUCUUUCCUU----UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_2887_TPlot.pdf
TRINITY_DN4606_c0_g1:2889	si_s313	TRINITY_DN4606_c0_g1	2878	2898	2889	-30.80	-21.70	0.704545454545454	5	2-13,2897-2886;15-19,2884-2880	1-1,2898-2898[UP5];14-14,2885-2885[SIL];20-21,2879-2878[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AGGACGAAAAGGACAGAAUUA&AAAUUCUGUCCUUCUUGUUAC	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN4606_c0_g1_2889_TPlot.pdf
TRINITY_DN4606_c0_g1:2890	si_s312	TRINITY_DN4606_c0_g1	2879	2899	2890	-29.00	-21.70	0.748275862068965	6	3-14,2897-2886;16-20,2884-2880	1-2,2899-2898[UP5];15-15,2885-2885[SIL];21-21,2879-2879[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	GGACGAAAAGGACAGAAUUAA&AAAAUUCUGUCCUUCUUGUUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4606_c0_g1_2890_TPlot.pdf
TRINITY_DN4606_c0_g1:2929	si_s79	TRINITY_DN4606_c0_g1	2918	2942	2929	-26.20	-17.30	0.66030534351145	13.5	1-9,2942-2934;10-18,2929-2921	x-x,2933-2930[BULt];19-21,2920-2918[UP3]	...(((((((((....(((((((((&)))))))))----)))))))))...	UGAAAGAGAGGAACCUGAGAAAGAA&UUUUUUCUU----UCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4606_c0_g1_2929_TPlot.pdf
TRINITY_DN4606_c0_g1:2934	si_s78	TRINITY_DN4606_c0_g1	2919	2943	2934	-26.20	-17.50	0.66793893129771	13.5	2-10,2942-2934;11-19,2929-2921	1-1,2943-2943[UP5];x-x,2933-2930[BULt];20-21,2920-2919[UP3]	..(((((((((....(((((((((.&.)))))))))----)))))))))..	GAAAGAGAGGAACCUGAGAAAGAAG&UUUUUUUCUU----UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4606_c0_g1_2934_TPlot.pdf
TRINITY_DN4606_c0_g1:2935	si_s77	TRINITY_DN4606_c0_g1	2920	2944	2935	-25.50	-19.20	0.752941176470588	12.5	1-11,2944-2934;12-20,2929-2921	x-x,2933-2930[BULt];21-21,2920-2920[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AAAGAGAGGAACCUGAGAAAGAAGA&UUUUUUUUCUU----UCCUUUCUUC	3	0.999999999995351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4606_c0_g1_2935_TPlot.pdf
TRINITY_DN4606_c0_g1:2937	si_s75	TRINITY_DN4606_c0_g1	2922	2946	2937	-24.00	-18.30	0.7625	10	3-13,2944-2934;14-21,2929-2922	1-2,2946-2945[UP5];x-x,2933-2930[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	AGAGAGGAACCUGAGAAAGAAGAAC&UAUUUUUUUUCUU----UCCUUUCU	3	0.999999993201385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4606_c0_g1_2937_TPlot.pdf
TRINITY_DN4606_c0_g1:2938	si_s74	TRINITY_DN4606_c0_g1	2923	2949	2938	-25.00	-17.40	0.696	11	1-3,2949-2947;4-14,2944-2934;15-21,2929-2923	x-x,2946-2945[BULt];x-x,2933-2930[BULt]	(((((((....(((((((((((..(((&)))--)))))))))))----)))))))	GAGAGGAACCUGAGAAAGAAGAACUAG&CUA--UUUUUUUUCUU----UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4606_c0_g1_2938_TPlot.pdf
TRINITY_DN4606_c0_g1:2939	si_s73	TRINITY_DN4606_c0_g1	2924	2950	2939	-24.00	-15.80	0.658333333333333	11	1-4,2950-2947;5-15,2944-2934;16-21,2929-2924	x-x,2946-2945[BULt];x-x,2933-2930[BULt]	((((((....(((((((((((..((((&))))--)))))))))))----))))))	AGAGGAACCUGAGAAAGAAGAACUAGA&UCUA--UUUUUUUUCUU----UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4606_c0_g1_2939_TPlot.pdf
TRINITY_DN4606_c0_g1:3266	si_a546	TRINITY_DN4606_c0_g1	3255	3277	3266	-28.60	-18.94	0.662237762237762	12.5	1-8,3277-3270;13-21,3263-3255	9-12,3269-3264[AILt]	(((((((((......((((((((&))))))))--....)))))))))	GAUGAAGAAUUCCAAAUUGAACC&GGUUCAAU--CUAUUUCUUUAUC	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN4606_c0_g1_3266_TPlot.pdf
TRINITY_DN4606_c0_g1:376	si_s87	TRINITY_DN4606_c0_g1	356	385	376	-32.90	-22.30	0.677811550151976	21	1-5,385-381;7-12,379-374;13-21,364-356	6-6,380-380[SIL];x-x,373-365[BULt]	(((((((((.........((((((.(((((&))))).))))))---------)))))))))	AAGCGAAGAAAUCACACCAGAAGGUAGGAA&UUCCUUUCUUCU---------UCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4606_c0_g1_376_TPlot.pdf
TRINITY_DN4606_c0_g1:377	si_s86	TRINITY_DN4606_c0_g1	357	386	377	-32.90	-22.50	0.683890577507599	12	1-6,386-381;8-13,379-374;14-21,364-357	7-7,380-380[SIL];x-x,373-365[BULt]	((((((((.........((((((.((((((&)))))).))))))---------))))))))	AGCGAAGAAAUCACACCAGAAGGUAGGAAA&UUUCCUUUCUUCU---------UCUUCGCU	2	0.999999998599997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4606_c0_g1_377_TPlot.pdf
TRINITY_DN4606_c0_g1:3999	si_a21	TRINITY_DN4606_c0_g1	3988	4010	3999	-24.30	-16.70	0.687242798353909	7	1-6,4010-4005;7-21,4002-3988	x-x,4004-4003[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	UUAGAGUUAAAGAUAUCGAUAGG&CCUAUU--UAUUUUUAGUUCUAA	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN4606_c0_g1_3999_TPlot.pdf
TRINITY_DN4606_c0_g1:4069	si_s73	TRINITY_DN4606_c0_g1	4058	4078	4069	-24.00	-15.68	0.653333333333333	7.5	1-11,4078-4068;15-21,4064-4058	12-14,4067-4065[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	AAAGGAGCUUGAAAAAGUGGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4606_c0_g1_4069_TPlot.pdf
TRINITY_DN4606_c0_g1:4495	si_s815	TRINITY_DN4606_c0_g1	4484	4504	4495	-25.00	-17.70	0.708	8	1-15,4504-4490	16-21,4489-4484[UP3]	......(((((((((((((((&)))))))))))))))......	AAUAGAAUUAGGAAGAGGUAA&UUACCUUUUCUUAAUAAUGAA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN4606_c0_g1_4495_TPlot.pdf
TRINITY_DN4606_c0_g1:4496	si_s814	TRINITY_DN4606_c0_g1	4485	4505	4496	-26.60	-17.70	0.665413533834586	8	2-16,4504-4490	1-1,4505-4505[UP5];17-21,4489-4485[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAGAAUUAGGAAGAGGUAAA&GUUACCUUUUCUUAAUAAUGA	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN4606_c0_g1_4496_TPlot.pdf
TRINITY_DN4606_c0_g1:4497	si_s813	TRINITY_DN4606_c0_g1	4486	4506	4497	-27.10	-17.70	0.653136531365314	8.5	3-17,4504-4490	1-2,4506-4505[UP5];18-21,4489-4486[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAGAAUUAGGAAGAGGUAAAA&CGUUACCUUUUCUUAAUAAUG	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN4606_c0_g1_4497_TPlot.pdf
TRINITY_DN4606_c0_g1:4498	si_s812	TRINITY_DN4606_c0_g1	4487	4507	4498	-26.40	-17.70	0.670454545454545	9.5	4-18,4504-4490	1-3,4507-4505[UP5];19-21,4489-4487[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAUUAGGAAGAGGUAAAAA&UCGUUACCUUUUCUUAAUAAU	3	0.999913265931978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN4606_c0_g1_4498_TPlot.pdf
TRINITY_DN4606_c0_g1:4499	si_s811	TRINITY_DN4606_c0_g1	4488	4508	4499	-26.40	-17.70	0.670454545454545	10.5	5-19,4504-4490	1-4,4508-4505[UP5];20-21,4489-4488[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAAUUAGGAAGAGGUAAAAAG&UUCGUUACCUUUUCUUAAUAA	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4606_c0_g1_4499_TPlot.pdf
TRINITY_DN4606_c0_g1:4500	si_s810	TRINITY_DN4606_c0_g1	4489	4512	4500	-27.90	-20.20	0.724014336917563	10.5	1-4,4512-4509;6-6,4507-4507;7-20,4503-4490	5-5,4508-4508[SIL];x-x,4506-4504[BULt];21-21,4489-4489[UP3]	.((((((((((((((...(.((((&)))).)---)))))))))))))).	AAUUAGGAAGAGGUAAAAAGGAAG&CUUCGU---UACCUUUUCUUAAUA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN4606_c0_g1_4500_TPlot.pdf
TRINITY_DN4606_c0_g1:4501	si_s809	TRINITY_DN4606_c0_g1	4490	4513	4501	-28.50	-21.30	0.747368421052632	9	1-5,4513-4509;7-7,4507-4507;8-21,4503-4490	6-6,4508-4508[SIL];x-x,4506-4504[BULt]	((((((((((((((...(.(((((&))))).)---))))))))))))))	AUUAGGAAGAGGUAAAAAGGAAGA&UCUUCGU---UACCUUUUCUUAAU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4606_c0_g1_4501_TPlot.pdf
TRINITY_DN4606_c0_g1:4502	si_s808	TRINITY_DN4606_c0_g1	4491	4514	4502	-28.60	-21.40	0.748251748251748	9	1-6,4514-4509;8-8,4507-4507;9-21,4503-4491	7-7,4508-4508[SIL];x-x,4506-4504[BULt]	(((((((((((((...(.((((((&)))))).)---)))))))))))))	UUAGGAAGAGGUAAAAAGGAAGAU&AUCUUCGU---UACCUUUUCUUAA	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN4606_c0_g1_4502_TPlot.pdf
TRINITY_DN4606_c0_g1:4503	si_s807	TRINITY_DN4606_c0_g1	4492	4515	4503	-28.90	-21.10	0.730103806228374	9.5	1-7,4515-4509;9-9,4507-4507;10-21,4503-4492	8-8,4508-4508[SIL];x-x,4506-4504[BULt]	((((((((((((...(.(((((((&))))))).)---))))))))))))	UAGGAAGAGGUAAAAAGGAAGAUG&UAUCUUCGU---UACCUUUUCUUA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4606_c0_g1_4503_TPlot.pdf
TRINITY_DN4606_c0_g1:4507	si_s806	TRINITY_DN4606_c0_g1	4493	4516	4507	-28.60	-21.40	0.748251748251748	10	1-8,4516-4509;10-10,4507-4507;11-21,4503-4493	9-9,4508-4508[SIL];x-x,4506-4504[BULt]	(((((((((((...(.((((((((&)))))))).)---)))))))))))	AGGAAGAGGUAAAAAGGAAGAUGA&UUAUCUUCGU---UACCUUUUCUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN4606_c0_g1_4507_TPlot.pdf
TRINITY_DN4606_c0_g1:4508	si_s805	TRINITY_DN4606_c0_g1	4494	4517	4508	-28.60	-21.70	0.758741258741259	10	1-9,4517-4509;11-11,4507-4507;12-21,4503-4494	10-10,4508-4508[SIL];x-x,4506-4504[BULt]	((((((((((...(.(((((((((&))))))))).)---))))))))))	GGAAGAGGUAAAAAGGAAGAUGAA&UUUAUCUUCGU---UACCUUUUCU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4606_c0_g1_4508_TPlot.pdf
TRINITY_DN4606_c0_g1:4509	si_s804	TRINITY_DN4606_c0_g1	4495	4518	4509	-27.90	-20.80	0.745519713261649	10.5	2-10,4517-4509;12-12,4507-4507;13-21,4503-4495	1-1,4518-4518[UP5];11-11,4508-4508[SIL];x-x,4506-4504[BULt]	(((((((((...(.(((((((((.&.))))))))).)---)))))))))	GAAGAGGUAAAAAGGAAGAUGAAG&UUUUAUCUUCGU---UACCUUUUC	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4606_c0_g1_4509_TPlot.pdf
TRINITY_DN4606_c0_g1:4512	si_a502	TRINITY_DN4606_c0_g1	4501	4521	4512	-32.10	-22.50	0.700934579439252	7	1-16,4521-4506	17-21,4505-4501[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUAAAAAGGAAGAUGAAGAAC&GUUUUUCGUCUUCCUUGGAAU	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN4606_c0_g1_4512_TPlot.pdf
TRINITY_DN4606_c0_g1:4513	si_a501	TRINITY_DN4606_c0_g1	4502	4522	4513	-33.50	-22.80	0.680597014925373	7	2-17,4521-4506	1-1,4522-4522[UP5];18-21,4505-4502[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAAAAAGGAAGAUGAAGAACC&CGUUUUUCGUCUUCCUUGGAA	3	0.999999640571353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4606_c0_g1_4513_TPlot.pdf
TRINITY_DN4606_c0_g1:4514	si_a500	TRINITY_DN4606_c0_g1	4503	4523	4514	-34.40	-22.80	0.662790697674419	8	3-18,4521-4506	1-2,4523-4522[UP5];19-21,4505-4503[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAAGGAAGAUGAAGAACCU&UCGUUUUUCGUCUUCCUUGGA	3	0.999999996514291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN4606_c0_g1_4514_TPlot.pdf
TRINITY_DN4606_c0_g1:4516	si_a498	TRINITY_DN4606_c0_g1	4505	4525	4516	-33.50	-22.80	0.680597014925373	10	5-20,4521-4506	1-4,4525-4522[UP5];21-21,4505-4505[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAGGAAGAUGAAGAACCUGA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999987521156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4606_c0_g1_4516_TPlot.pdf
TRINITY_DN4606_c0_g1:4517	si_a497	TRINITY_DN4606_c0_g1	4506	4526	4517	-32.00	-22.40	0.7	10.5	6-21,4521-4506	1-5,4526-4522[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAAGAUGAAGAACCUGAA&AUGUCGUUUUUCGUCUUCCUU	4	0.999999965938056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4606_c0_g1_4517_TPlot.pdf
TRINITY_DN4606_c0_g1:4609	si_a501	TRINITY_DN4606_c0_g1	4598	4618	4609	-33.50	-21.90	0.653731343283582	4	1-13,4618-4606;15-21,4604-4598	14-14,4605-4605[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	UUUUAAGAAAGAUGAAGAACG&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999999488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4606_c0_g1_4609_TPlot.pdf
TRINITY_DN4606_c0_g1:4616	si_a73	TRINITY_DN4606_c0_g1	4605	4625	4616	-21.90	-14.50	0.662100456621005	10.5	1-4,4625-4622;7-18,4619-4608	5-6,4621-4620[SIL];19-21,4607-4605[UP3]	...((((((((((((..((((&))))..))))))))))))...	AAAGAUGAAGAACGGGAUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999996835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN4606_c0_g1_4616_TPlot.pdf
TRINITY_DN4606_c0_g1:4617	si_a72	TRINITY_DN4606_c0_g1	4606	4626	4617	-21.90	-15.20	0.694063926940639	9	1-5,4626-4622;8-19,4619-4608	6-7,4621-4620[SIL];20-21,4607-4606[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	AAGAUGAAGAACGGGAUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999858358662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4606_c0_g1_4617_TPlot.pdf
TRINITY_DN4606_c0_g1:4618	si_a71	TRINITY_DN4606_c0_g1	4607	4627	4618	-23.30	-15.40	0.660944206008584	9	2-6,4626-4622;9-20,4619-4608	1-1,4627-4627[UP5];7-8,4621-4620[SIL];21-21,4607-4607[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	AGAUGAAGAACGGGAUGAAAU&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999995709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4606_c0_g1_4618_TPlot.pdf
TRINITY_DN4606_c0_g1:4803	si_s79	TRINITY_DN4606_c0_g1	4789	4812	4803	-26.20	-17.50	0.66793893129771	7	1-11,4812-4802;12-13,4800-4799;14-20,4796-4790	x-x,4801-4801[BULt];x-x,4798-4797[BULt];21-21,4789-4789[UP3]	.(((((((..((.(((((((((((&)))))))))))-))--))))))).	CAGAAGAAAUAGUGGAAGAAGAAA&UUUUUUCUUUC-CU--UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4606_c0_g1_4803_TPlot.pdf
TRINITY_DN4606_c0_g1:4804	si_s78	TRINITY_DN4606_c0_g1	4790	4813	4804	-26.20	-17.60	0.67175572519084	7	2-12,4812-4802;13-14,4800-4799;15-21,4796-4790	1-1,4813-4813[UP5];x-x,4801-4801[BULt];x-x,4798-4797[BULt]	(((((((..((.(((((((((((.&.)))))))))))-))--)))))))	AGAAGAAAUAGUGGAAGAAGAAAC&UUUUUUUCUUUC-CU--UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4606_c0_g1_4804_TPlot.pdf
TRINITY_DN4606_c0_g1:5106	si_s199	TRINITY_DN4606_c0_g1	5094	5115	5106	-31.20	-20.30	0.650641025641026	5.5	1-12,5115-5104;15-21,5100-5094	13-14,5103-5101[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	AUAACUGAAAACAUUCCAGAAU&AUUUUGGAAUGU-ACCAGUUGU	2	0.997424483779336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN4606_c0_g1_5106_TPlot.pdf
TRINITY_DN4606_c0_g1:5381	si_a329	TRINITY_DN4606_c0_g1	5370	5390	5381	-29.60	-19.50	0.658783783783784	10	2-6,5389-5385;9-19,5382-5372	1-1,5390-5390[UP5];7-8,5384-5383[SIL];20-21,5371-5370[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	UUGGACAAGGAAUUUGAGGAA&AUUUUUUUAUUCCUUGUCCCG	2	0.999988530050541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4606_c0_g1_5381_TPlot.pdf
TRINITY_DN4606_c0_g1:5383	si_a327	TRINITY_DN4606_c0_g1	5372	5392	5383	-28.40	-19.50	0.686619718309859	12	4-8,5389-5385;11-21,5382-5372	1-3,5392-5390[UP5];9-10,5384-5383[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GGACAAGGAAUUUGAGGAACU&UGAUUUUUUUAUUCCUUGUCC	2	0.998922310314455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN4606_c0_g1_5383_TPlot.pdf
TRINITY_DN4606_c0_g1:5637	si_a348	TRINITY_DN4606_c0_g1	5626	5646	5637	-21.10	-14.30	0.677725118483412	6.5	1-3,5646-5644;5-6,5642-5641;9-21,5638-5626	4-4,5643-5643[SIL];7-8,5640-5639[SIL]	(((((((((((((..((.(((&))).))..)))))))))))))	AAAGUAGAAUUAACUUUAUCG&CGAAAAUAUUAAUUCUAUUUU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN4606_c0_g1_5637_TPlot.pdf
TRINITY_DN4606_c0_g1:5940	si_s896	TRINITY_DN4606_c0_g1	5929	5949	5940	-31.60	-21.50	0.680379746835443	4	1-13,5949-5937;15-19,5935-5931	14-14,5936-5936[SIL];20-21,5930-5929[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UUAAAUUUAAGAGGAAGCCUA&UAGGCUUUCUCUUCAAUUUCA	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4606_c0_g1_5940_TPlot.pdf
TRINITY_DN4606_c0_g1:5941	si_s886	TRINITY_DN4606_c0_g1	5939	5950	5941	-26.50	-17.60	0.664150943396226	1	11-21,5949-5939	10-10,5950-5950[SIL]	(((((((((((.&.)))))))))))	GAGGAAGCCUAA&UAAAAAUAAAUA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN4606_c0_g1_5941_TPlot.pdf
TRINITY_DN4606_c0_g1:5942	si_s894	TRINITY_DN4606_c0_g1	5931	5951	5942	-29.10	-21.50	0.738831615120275	5	3-15,5949-5937;17-21,5935-5931	1-2,5951-5950[UP5];16-16,5936-5936[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AAAUUUAAGAGGAAGCCUAAA&AAUAGGCUUUCUCUUCAAUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4606_c0_g1_5942_TPlot.pdf
TRINITY_DN4606_c0_g1:5944	si_s892	TRINITY_DN4606_c0_g1	5933	5953	5944	-29.50	-19.90	0.674576271186441	9	5-17,5949-5937;19-21,5935-5933	1-4,5953-5950[UP5];18-18,5936-5936[SIL]	(((.(((((((((((((....&....))))))))))))).)))	AUUUAAGAGGAAGCCUAAAGA&UAAAUAGGCUUUCUCUUCAAU	3	0.999967176608486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4606_c0_g1_5944_TPlot.pdf
TRINITY_DN4606_c0_g1:5945	si_s891	TRINITY_DN4606_c0_g1	5934	5954	5945	-29.60	-19.60	0.662162162162162	12.5	6-18,5949-5937	1-5,5954-5950[UP5];19-21,5936-5934[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUUAAGAGGAAGCCUAAAGAA&AUAAAUAGGCUUUCUCUUCAA	3	0.999989647362308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4606_c0_g1_5945_TPlot.pdf
TRINITY_DN4606_c0_g1:5946	si_s890	TRINITY_DN4606_c0_g1	5935	5955	5946	-29.50	-19.60	0.664406779661017	13.5	7-19,5949-5937	1-6,5955-5950[UP5];20-21,5936-5935[UP3]	..(((((((((((((......&......)))))))))))))..	UUAAGAGGAAGCCUAAAGAAC&AAUAAAUAGGCUUUCUCUUCA	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4606_c0_g1_5946_TPlot.pdf
TRINITY_DN4606_c0_g1:5947	si_s889	TRINITY_DN4606_c0_g1	5936	5956	5947	-28.80	-19.60	0.680555555555556	14.5	8-20,5949-5937	1-7,5956-5950[UP5];21-21,5936-5936[UP3]	.(((((((((((((.......&.......))))))))))))).	UAAGAGGAAGCCUAAAGAACC&AAAUAAAUAGGCUUUCUCUUC	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN4606_c0_g1_5947_TPlot.pdf
TRINITY_DN4606_c0_g1:5948	si_s888	TRINITY_DN4606_c0_g1	5937	5957	5948	-26.80	-19.60	0.73134328358209	15.5	9-21,5949-5937	1-8,5957-5950[UP5]	(((((((((((((........&........)))))))))))))	AAGAGGAAGCCUAAAGAACCG&AAAAUAAAUAGGCUUUCUCUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN4606_c0_g1_5948_TPlot.pdf
TRINITY_DN4606_c0_g1:6223	si_s414	TRINITY_DN4606_c0_g1	6212	6232	6223	-24.90	-17.10	0.686746987951807	13	5-16,6228-6217	1-4,6232-6229[UP5];17-21,6216-6212[UP3]	.....((((((((((((....&....)))))))))))).....	UAAAUUAGAGUAUGUCGGACC&AAAACGACAUAUUCUAUAUAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN4606_c0_g1_6223_TPlot.pdf
TRINITY_DN4606_c0_g1:6224	si_s413	TRINITY_DN4606_c0_g1	6213	6233	6224	-24.80	-17.10	0.689516129032258	13.5	6-17,6228-6217	1-5,6233-6229[UP5];18-21,6216-6213[UP3]	....((((((((((((.....&.....))))))))))))....	AAAUUAGAGUAUGUCGGACCU&AAAAACGACAUAUUCUAUAUA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN4606_c0_g1_6224_TPlot.pdf
TRINITY_DN4606_c0_g1:6245	si_a500	TRINITY_DN4606_c0_g1	6234	6253	6245	-34.40	-22.40	0.651162790697674	6.5	1-7,6253-6247;9-19,6246-6236	8-8,x-x[BULq];20-21,6235-6234[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	GAUAAGGAAGACG-AAGAUGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999999999995798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN4606_c0_g1_6245_TPlot.pdf
TRINITY_DN4606_c0_g1:6247	si_a498	TRINITY_DN4606_c0_g1	6236	6255	6247	-33.50	-23.70	0.707462686567164	6.5	2-9,6254-6247;11-21,6246-6236	1-1,6255-6255[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	UAAGGAAGACG-AAGAUGAUG&UGUCGUUUUUCGUCUUCCUUG	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4606_c0_g1_6247_TPlot.pdf
TRINITY_DN4606_c0_g1:6248	si_a496	TRINITY_DN4606_c0_g1	6238	6257	6248	-32.40	-22.20	0.685185185185185	10	4-11,6254-6247;13-21,6246-6238	1-3,6257-6255[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AGGAAGACG-AAGAUGAUGCU&UAUGUCGUUUUUCGUCUUCCU	4	0.999999843083262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN4606_c0_g1_6248_TPlot.pdf
TRINITY_DN4606_c0_g1:644	si_a503	TRINITY_DN4606_c0_g1	633	654	644	-32.10	-21.00	0.654205607476635	9	1-5,654-650;6-17,648-637;20-21,634-633	x-x,649-649[BULt];18-19,636-635[SIL]	((..((((((((((((.(((((&)))))-))))))))))))..))	CAGGCUAAGGAGGAUGCAGAGG&UUUUU-CGUCUUCCUUGGAAUG	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN4606_c0_g1_644_TPlot.pdf
TRINITY_DN4606_c0_g1:6544	si_s84	TRINITY_DN4606_c0_g1	6533	6553	6544	-32.30	-21.80	0.674922600619195	6	1-5,6553-6549;7-17,6547-6537;19-21,6535-6533	6-6,6548-6548[SIL];18-18,6536-6536[SIL]	(((.(((((((((((.(((((&))))).))))))))))).)))	UGAUGAGGAAGAGAGUGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4606_c0_g1_6544_TPlot.pdf
TRINITY_DN4606_c0_g1:6545	si_s83	TRINITY_DN4606_c0_g1	6534	6554	6545	-30.90	-21.90	0.70873786407767	5.5	1-6,6554-6549;8-18,6547-6537;20-21,6535-6534	7-7,6548-6548[SIL];19-19,6536-6536[SIL]	((.(((((((((((.((((((&)))))).))))))))))).))	GAUGAGGAAGAGAGUGAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999999685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4606_c0_g1_6545_TPlot.pdf
TRINITY_DN4606_c0_g1:6546	si_s82	TRINITY_DN4606_c0_g1	6535	6555	6546	-28.90	-20.90	0.72318339100346	7.5	2-7,6554-6549;9-19,6547-6537	1-1,6555-6555[UP5];8-8,6548-6548[SIL];20-21,6536-6535[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AUGAGGAAGAGAGUGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_6546_TPlot.pdf
TRINITY_DN4606_c0_g1:6547	si_s81	TRINITY_DN4606_c0_g1	6536	6556	6547	-28.90	-22.60	0.782006920415225	6.5	1-8,6556-6549;10-20,6547-6537	9-9,6548-6548[SIL];21-21,6536-6536[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	UGAGGAAGAGAGUGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4606_c0_g1_6547_TPlot.pdf
TRINITY_DN4606_c0_g1:6548	si_s80	TRINITY_DN4606_c0_g1	6537	6557	6548	-28.20	-23.10	0.819148936170213	5	1-9,6557-6549;11-21,6547-6537	10-10,6548-6548[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GAGGAAGAGAGUGAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	2	0.958671961092559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4606_c0_g1_6548_TPlot.pdf
TRINITY_DN4606_c0_g1:6549	si_s79	TRINITY_DN4606_c0_g1	6538	6558	6549	-26.20	-20.30	0.774809160305344	6	2-10,6557-6549;12-21,6547-6538	1-1,6558-6558[UP5];11-11,6548-6548[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AGGAAGAGAGUGAAGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	3	0.999999972517613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4606_c0_g1_6549_TPlot.pdf
TRINITY_DN4606_c0_g1:655	si_a323	TRINITY_DN4606_c0_g1	642	664	655	-26.80	-17.78	0.663432835820896	11	1-14,664-651;17-21,646-642	15-16,650-647[AILt]	(((((....((((((((((((((&))))))))))))))--..)))))	GAGGAUGCAGAGGGAGUUGUGGA&UCCAUGAUUUUUUU--AUUCCUU	3	0.999999948524549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN4606_c0_g1_655_TPlot.pdf
TRINITY_DN4606_c0_g1:6551	si_s77	TRINITY_DN4606_c0_g1	6540	6560	6551	-25.50	-21.00	0.823529411764706	4.5	1-12,6560-6549;14-21,6547-6540	13-13,6548-6548[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAAGAGAGUGAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4606_c0_g1_6551_TPlot.pdf
TRINITY_DN4606_c0_g1:6552	si_s91	TRINITY_DN4606_c0_g1	6541	6561	6552	-34.70	-23.60	0.680115273775216	5.5	1-17,6561-6545	18-21,6544-6541[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAGAGAGUGAAGAAGAAGAAG&UUUCUUCUUCUUCGCUUCGGA	3	0.999999999592281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4606_c0_g1_6552_TPlot.pdf
TRINITY_DN4606_c0_g1:6553	si_s90	TRINITY_DN4606_c0_g1	6542	6562	6553	-35.30	-23.70	0.671388101983003	6	2-18,6561-6545	1-1,6562-6562[UP5];19-21,6544-6542[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AGAGAGUGAAGAAGAAGAAGC&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999998701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4606_c0_g1_6553_TPlot.pdf
TRINITY_DN4606_c0_g1:6554	si_s89	TRINITY_DN4606_c0_g1	6543	6563	6554	-35.30	-23.70	0.671388101983003	7	3-19,6561-6545	1-2,6563-6562[UP5];20-21,6544-6543[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAGAGUGAAGAAGAAGAAGCU&CCUUUCUUCUUCUUCGCUUCG	3	0.999999999999061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4606_c0_g1_6554_TPlot.pdf
TRINITY_DN4606_c0_g1:6555	si_s88	TRINITY_DN4606_c0_g1	6544	6569	6555	-34.80	-25.00	0.718390804597701	13	1-3,6569-6567;4-20,6561-6545	x-x,6566-6562[BULt];21-21,6544-6544[UP3]	.(((((((((((((((((.....(((&)))-----))))))))))))))))).	AGAGUGAAGAAGAAGAAGCUAUUGGA&UCC-----UUUCUUCUUCUUCGCUUC	3	0.999991880123019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4606_c0_g1_6555_TPlot.pdf
TRINITY_DN4606_c0_g1:6556	si_s87	TRINITY_DN4606_c0_g1	6545	6570	6556	-32.90	-25.70	0.781155015197568	12	1-4,6570-6567;5-21,6561-6545	x-x,6566-6562[BULt]	(((((((((((((((((.....((((&))))-----)))))))))))))))))	GAGUGAAGAAGAAGAAGCUAUUGGAA&UUCC-----UUUCUUCUUCUUCGCUU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4606_c0_g1_6556_TPlot.pdf
TRINITY_DN4606_c0_g1:6557	si_s86	TRINITY_DN4606_c0_g1	6546	6571	6557	-32.90	-25.50	0.775075987841945	11.5	1-5,6571-6567;6-21,6561-6546	x-x,6566-6562[BULt]	((((((((((((((((.....(((((&)))))-----))))))))))))))))	AGUGAAGAAGAAGAAGCUAUUGGAAA&UUUCC-----UUUCUUCUUCUUCGCU	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4606_c0_g1_6557_TPlot.pdf
TRINITY_DN4606_c0_g1:6558	si_s85	TRINITY_DN4606_c0_g1	6547	6572	6558	-33.80	-24.40	0.72189349112426	12.5	2-6,6571-6567;7-21,6561-6547	1-1,6572-6572[UP5];x-x,6566-6562[BULt]	(((((((((((((((.....(((((.&.)))))-----)))))))))))))))	GUGAAGAAGAAGAAGCUAUUGGAAAA&CUUUCC-----UUUCUUCUUCUUCGC	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4606_c0_g1_6558_TPlot.pdf
TRINITY_DN4606_c0_g1:6732	si_s76	TRINITY_DN4606_c0_g1	6720	6741	6732	-23.60	-15.50	0.656779661016949	13.5	6-14,6736-6728;15-21,6726-6720	1-5,6741-6737[UP5];x-x,6727-6727[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	AAGAAAGUGGAGGAGGAUAUUC&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4606_c0_g1_6732_TPlot.pdf
TRINITY_DN4606_c0_g1:6865	si_a764	TRINITY_DN4606_c0_g1	6850	6874	6865	-28.90	-18.90	0.653979238754325	7	1-10,6874-6865;11-14,6863-6860;15-19,6856-6852	x-x,6864-6864[BULt];x-x,6859-6857[BULt];20-21,6851-6850[UP3]	..(((((...((((.((((((((((&))))))))))-))))---)))))..	AAGAAUCUAAAAUCAAAAAACCCAA&UUGGGUUUUU-GAUU---GAUUCAA	4	0.999999998959582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN4606_c0_g1_6865_TPlot.pdf
TRINITY_DN4606_c0_g1:6866	si_a763	TRINITY_DN4606_c0_g1	6851	6875	6866	-28.80	-19.60	0.680555555555556	6	1-11,6875-6865;12-15,6863-6860;16-20,6856-6852	x-x,6864-6864[BULt];x-x,6859-6857[BULt];21-21,6851-6851[UP3]	.(((((...((((.(((((((((((&)))))))))))-))))---))))).	AGAAUCUAAAAUCAAAAAACCCAAA&UUUGGGUUUUU-GAUU---GAUUCA	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN4606_c0_g1_6866_TPlot.pdf
TRINITY_DN4606_c0_g1:7178	si_s80	TRINITY_DN4606_c0_g1	7167	7187	7178	-28.20	-19.30	0.684397163120567	6	1-15,7187-7173	16-21,7172-7167[UP3]	......(((((((((((((((&)))))))))))))))......	AAAUAUGAAAGGAAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4606_c0_g1_7178_TPlot.pdf
TRINITY_DN4606_c0_g1:7179	si_s79	TRINITY_DN4606_c0_g1	7168	7188	7179	-26.20	-19.50	0.744274809160305	6	2-16,7187-7173	1-1,7188-7188[UP5];17-21,7172-7168[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUAUGAAAGGAAAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999999758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4606_c0_g1_7179_TPlot.pdf
TRINITY_DN4606_c0_g1:7180	si_s78	TRINITY_DN4606_c0_g1	7169	7189	7180	-26.20	-21.20	0.809160305343511	5	1-17,7189-7173	18-21,7172-7169[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUAUGAAAGGAAAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4606_c0_g1_7180_TPlot.pdf
TRINITY_DN4606_c0_g1:7182	si_s76	TRINITY_DN4606_c0_g1	7171	7191	7182	-23.60	-22.10	0.936440677966102	4	2-19,7190-7173	1-1,7191-7191[UP5];20-21,7172-7171[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AUGAAAGGAAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4606_c0_g1_7182_TPlot.pdf
TRINITY_DN4606_c0_g1:7183	si_s75	TRINITY_DN4606_c0_g1	7172	7192	7183	-24.00	-22.10	0.920833333333333	5	3-20,7190-7173	1-2,7192-7191[UP5];21-21,7172-7172[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UGAAAGGAAAGAAAAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4606_c0_g1_7183_TPlot.pdf
TRINITY_DN4606_c0_g1:7184	si_s74	TRINITY_DN4606_c0_g1	7173	7193	7184	-25.00	-21.70	0.868	6	4-21,7190-7173	1-3,7193-7191[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAAGGAAAGAAAAAGAAAAA&CUAUUUUUUUUCUUUCCUUUC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4606_c0_g1_7184_TPlot.pdf
TRINITY_DN4606_c0_g1:7185	si_s73	TRINITY_DN4606_c0_g1	7174	7194	7185	-24.00	-18.70	0.779166666666667	8	5-21,7190-7174	1-4,7194-7191[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGAAAGAAAAAGAAAAAC&UCUAUUUUUUUUCUUUCCUUU	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4606_c0_g1_7185_TPlot.pdf
TRINITY_DN4606_c0_g1:7186	si_s72	TRINITY_DN4606_c0_g1	7175	7195	7186	-24.10	-17.80	0.738589211618257	10	6-21,7190-7175	1-5,7195-7191[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAAAGAAAAAGAAAAACC&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999733478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4606_c0_g1_7186_TPlot.pdf
TRINITY_DN4606_c0_g1:7187	si_s71	TRINITY_DN4606_c0_g1	7176	7200	7187	-25.70	-19.08	0.742412451361868	11	1-5,7200-7196;7-21,7190-7176	6-6,7195-7191[AILt]	(((((((((((((((.....(((((&)))))----.)))))))))))))))	AGGAAAGAAAAAGAAAAACCAGAAG&CUUCU----AUUUUUUUUCUUUCCU	3	0.999999871993792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4606_c0_g1_7187_TPlot.pdf
TRINITY_DN4606_c0_g1:7188	si_s70	TRINITY_DN4606_c0_g1	7177	7201	7188	-25.80	-19.58	0.75891472868217	11	1-6,7201-7196;8-21,7190-7177	7-7,7195-7191[AILt]	((((((((((((((.....((((((&))))))----.))))))))))))))	GGAAAGAAAAAGAAAAACCAGAAGU&ACUUCU----AUUUUUUUUCUUUCC	2	0.986684328710919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4606_c0_g1_7188_TPlot.pdf
TRINITY_DN4606_c0_g1:7189	si_s69	TRINITY_DN4606_c0_g1	7178	7202	7189	-23.40	-16.48	0.704273504273504	12	2-7,7201-7196;9-21,7190-7178	1-1,7202-7202[UP5];8-8,7195-7191[AILt]	(((((((((((((.....((((((.&.))))))----.)))))))))))))	GAAAGAAAAAGAAAAACCAGAAGUA&AACUUCU----AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4606_c0_g1_7189_TPlot.pdf
TRINITY_DN4606_c0_g1:7657	si_a642	TRINITY_DN4606_c0_g1	7641	7666	7657	-25.90	-17.12	0.661003861003861	10	2-16,7665-7651;18-21,7644-7641	1-1,7666-7666[UP5];17-17,7650-7645[AILt]	((((......(((((((((((((((.&.)))))))))))))))-----.))))	CCGGAGGAAAGUAUUACUCAAGAAGU&UUUUUUUGAGUAAUAU-----AUCGG	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN4606_c0_g1_7657_TPlot.pdf
TRINITY_DN4606_c0_g1:7658	si_a641	TRINITY_DN4606_c0_g1	7647	7667	7658	-23.60	-15.60	0.661016949152542	9.5	3-17,7665-7651	1-2,7667-7666[UP5];18-21,7650-7647[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAAAGUAUUACUCAAGAAGUU&AUUUUUUUGAGUAAUAUAUCG	4	0.999985874321336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN4606_c0_g1_7658_TPlot.pdf
TRINITY_DN4606_c0_g1:7941	si_s67	TRINITY_DN4606_c0_g1	7930	7951	7941	-25.60	-17.90	0.69921875	8	1-3,7951-7949;5-9,7947-7943;11-21,7940-7930	4-4,7948-7948[SIL];10-10,7942-7941[AILt]	(((((((((((..(((((.(((&))).)))))-.)))))))))))	AAGAGAAAGAGGAAGAAGAUGC&GCAACUUCU-AUUUUUUUUCUU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4606_c0_g1_7941_TPlot.pdf
TRINITY_DN4606_c0_g1:7944	si_s65	TRINITY_DN4606_c0_g1	7932	7953	7944	-26.00	-17.90	0.688461538461538	8	1-5,7953-7949;7-11,7947-7943;13-21,7940-7932	6-6,7948-7948[SIL];12-12,7942-7941[AILt]	(((((((((..(((((.(((((&))))).)))))-.)))))))))	GAGAAAGAGGAAGAAGAUGCUG&UAGCAACUUCU-AUUUUUUUUC	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN4606_c0_g1_7944_TPlot.pdf
TRINITY_DN4606_c0_g1:82	si_s68	TRINITY_DN4606_c0_g1	70	91	82	-23.10	-15.50	0.670995670995671	6.5	1-8,91-84;10-14,82-78;15-21,76-70	9-9,83-83[SIL];x-x,77-77[BULt]	(((((((.(((((.((((((((&)))))))).)))))-)))))))	AAAGAAACAGAGGAAGAGGUUG&CAACUUCUAUUUUU-UUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4606_c0_g1_82_TPlot.pdf
TRINITY_DN4606_c0_g1:8205	si_a776	TRINITY_DN4606_c0_g1	8193	8214	8205	-27.10	-17.80	0.656826568265683	10	3-11,8212-8204;12-16,8202-8198	1-2,8214-8213[UP5];x-x,8203-8203[BULt];17-21,8197-8193[UP3]	.....(((((.(((((((((..&..)))))))))-))))).....	GUUCAAGAAGAAGUUGAAUCUA&UUGAUUCAACU-CUUCUAUUUU	4	0.99997820928716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN4606_c0_g1_8205_TPlot.pdf
TRINITY_DN4606_c0_g1:8206	si_a775	TRINITY_DN4606_c0_g1	8194	8215	8206	-27.20	-17.80	0.654411764705882	11	4-12,8212-8204;13-17,8202-8198	1-3,8215-8213[UP5];x-x,8203-8203[BULt];18-21,8197-8194[UP3]	....(((((.(((((((((...&...)))))))))-)))))....	UUCAAGAAGAAGUUGAAUCUAC&AUUGAUUCAACU-CUUCUAUUU	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN4606_c0_g1_8206_TPlot.pdf
TRINITY_DN4606_c0_g1:8258	si_s89	TRINITY_DN4606_c0_g1	8246	8268	8258	-35.30	-23.00	0.651558073654391	8.5	1-4,8268-8265;6-15,8262-8253;17-20,8250-8247	5-5,8264-8263[AILt];16-16,8252-8251[AILt];21-21,8246-8246[UP3]	.((((..((((((((((..((((&))))-.))))))))))-.)))).	AGAAGAGGAGGAAGAAGCUGAGG&CCUU-UCUUCUUCUUC-GCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4606_c0_g1_8258_TPlot.pdf
TRINITY_DN4606_c0_g1:8342	si_s898	TRINITY_DN4606_c0_g1	8331	8362	8342	-30.70	-21.90	0.713355048859935	25	1-4,8362-8359;5-19,8347-8333	x-x,8358-8348[BULt];20-21,8332-8331[UP3]	..(((((((((((((((...........((((&))))-----------)))))))))))))))..	CCUGAAAUUGAAGAGGAAUCAGUAAUAAAGCC&GGCU-----------UUCUCUUCAAUUUCAAU	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4606_c0_g1_8342_TPlot.pdf
TRINITY_DN4606_c0_g1:8343	si_s897	TRINITY_DN4606_c0_g1	8332	8363	8343	-31.30	-23.00	0.73482428115016	24	1-5,8363-8359;6-20,8347-8333	x-x,8358-8348[BULt];21-21,8332-8332[UP3]	.(((((((((((((((...........(((((&)))))-----------))))))))))))))).	CUGAAAUUGAAGAGGAAUCAGUAAUAAAGCCU&AGGCU-----------UUCUCUUCAAUUUCAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN4606_c0_g1_8343_TPlot.pdf
TRINITY_DN4606_c0_g1:8344	si_s896	TRINITY_DN4606_c0_g1	8333	8364	8344	-31.60	-22.70	0.718354430379747	24	2-6,8363-8359;7-21,8347-8333	1-1,8364-8364[UP5];x-x,8358-8348[BULt]	(((((((((((((((...........(((((.&.)))))-----------)))))))))))))))	UGAAAUUGAAGAGGAAUCAGUAAUAAAGCCUC&UAGGCU-----------UUCUCUUCAAUUUCA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4606_c0_g1_8344_TPlot.pdf
TRINITY_DN4606_c0_g1:881	si_a319	TRINITY_DN4606_c0_g1	867	890	881	-22.40	-15.10	0.674107142857143	11	5-15,886-876;16-21,872-867	1-4,890-887[UP5];x-x,875-873[BULt]	((((((...(((((((((((....&....)))))))))))---))))))	GAUAAAACAGAAAUCAUGGAAAUA&UUUAUCCAUGAUUUU---UUUAUU	3	0.999999999999278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4606_c0_g1_881_TPlot.pdf
TRINITY_DN4606_c0_g1:908	si_s92	TRINITY_DN4606_c0_g1	893	917	908	-34.90	-22.88	0.655587392550143	12	1-12,917-906;14-19,900-895	13-13,905-901[AILt];20-21,894-893[UP3]	..((((((.....((((((((((((&))))))))))))----.))))))..	UACCGAAGAAACAGAAGGAGAAGAA&UUCUUCUUCUUC----GCUUCGGAU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4606_c0_g1_908_TPlot.pdf
TRINITY_DN4606_c0_g1:9348	si_s67	TRINITY_DN4606_c0_g1	9337	9358	9348	-25.60	-19.80	0.7734375	7.5	1-9,9358-9350;11-21,9347-9337	10-10,9349-9348[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	AAGAAAAGGAGGAAGAGGUUGU&GCAACUUCU-AUUUUUUUUCUU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4606_c0_g1_9348_TPlot.pdf
TRINITY_DN4606_c0_g1:9597	si_s806	TRINITY_DN4606_c0_g1	9588	9606	9597	-28.60	-20.00	0.699300699300699	7	1-10,9606-9597;13-21,9596-9588	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	AAGAAAAGG--AUGAAGGUGA&UUAUCUUCGUUACCUUUUCUU	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN4606_c0_g1_9597_TPlot.pdf
TRINITY_DN4606_c0_g1:9804	si_s77	TRINITY_DN4606_c0_g1	9795	9813	9804	-25.50	-17.00	0.666666666666667	5.5	1-11,9813-9803;14-21,9802-9795	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	GAAGGAAG--AAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4606_c0_g1_9804_TPlot.pdf
TRINITY_DN4606_c0_g1:9894	si_s82	TRINITY_DN4606_c0_g1	9881	9903	9894	-28.90	-19.20	0.664359861591695	11	3-6,9901-9898;8-11,9896-9893;12-21,9890-9881	1-2,9903-9902[UP5];7-7,9897-9897[SIL];x-x,9892-9891[BULt]	((((((((((..((((.((((..&..)))).))))--))))))))))	AAGAAGAAGAUGAAGGUGAGGCU&UUUCUUUCCUU--UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4606_c0_g1_9894_TPlot.pdf
TRINITY_DN4606_c0_g1:9981	si_s76	TRINITY_DN4606_c0_g1	9970	9990	9981	-23.60	-15.50	0.656779661016949	5	2-12,9989-9979;15-21,9976-9970	1-1,9990-9990[UP5];13-14,9978-9977[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AAGAAAGCCAAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4606_c0_g1_9981_TPlot.pdf
TRINITY_DN4607_c1_g1:1276	si_s202	TRINITY_DN4607_c1_g1	1265	1285	1276	-33.60	-22.40	0.666666666666667	8.5	2-16,1284-1270	1-1,1285-1285[UP5];17-21,1269-1265[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCUUGAGCUGGUACGUUCUAU&UUGGAAUGUACCAGUUGUGUU	2	0.943587266821235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN4607_c1_g1_1276_TPlot.pdf
TRINITY_DN4607_c1_g1:1279	si_s199	TRINITY_DN4607_c1_g1	1268	1288	1279	-31.20	-22.40	0.717948717948718	11.5	5-19,1284-1270	1-4,1288-1285[UP5];20-21,1269-1268[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGAGCUGGUACGUUCUAUUUC&AUUUUGGAAUGUACCAGUUGU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN4607_c1_g1_1279_TPlot.pdf
TRINITY_DN4607_c1_g1:1280	si_s198	TRINITY_DN4607_c1_g1	1269	1289	1280	-30.80	-22.40	0.727272727272727	12.5	6-20,1284-1270	1-5,1289-1285[UP5];21-21,1269-1269[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAGCUGGUACGUUCUAUUUCC&UAUUUUGGAAUGUACCAGUUG	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN4607_c1_g1_1280_TPlot.pdf
TRINITY_DN4607_c1_g1:1281	si_s197	TRINITY_DN4607_c1_g1	1270	1290	1281	-29.20	-21.90	0.75	13.5	7-21,1284-1270	1-6,1290-1285[UP5]	(((((((((((((((......&......)))))))))))))))	AGCUGGUACGUUCUAUUUCCA&UUAUUUUGGAAUGUACCAGUU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN4607_c1_g1_1281_TPlot.pdf
TRINITY_DN4607_c1_g1:1282	si_s196	TRINITY_DN4607_c1_g1	1271	1291	1282	-29.30	-21.10	0.720136518771331	15	8-21,1284-1271	1-7,1291-1285[UP5]	((((((((((((((.......&.......))))))))))))))	GCUGGUACGUUCUAUUUCCAG&AUUAUUUUGGAAUGUACCAGU	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN4607_c1_g1_1282_TPlot.pdf
TRINITY_DN4607_c1_g1:1644	si_a494	TRINITY_DN4607_c1_g1	1633	1655	1644	-29.50	-20.48	0.694237288135593	12	3-8,1653-1648;11-21,1643-1633	1-2,1655-1654[UP5];9-10,1647-1644[AILt]	(((((((((((....((((((..&..))))))--..)))))))))))	GAAGACGAAAAGAUGGACGUAAC&AAUAUGUC--GUUUUUCGUCUUC	3	0.999997222946794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN4607_c1_g1_1644_TPlot.pdf
TRINITY_DN4607_c1_g1:1651	si_a627	TRINITY_DN4607_c1_g1	1640	1658	1651	-29.50	-20.20	0.684745762711864	6.5	1-5,1658-1654;8-13,1653-1648;15-21,1646-1640	6-7,x-x[BULq];14-14,1647-1647[SIL]	(((((((.((((((--(((((&)))))..)))))).)))))))	AAAAGAUGGACGUA--ACGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN4607_c1_g1_1651_TPlot.pdf
TRINITY_DN4607_c1_g1:1834	si_s76	TRINITY_DN4607_c1_g1	1816	1843	1834	-23.60	-15.50	0.656779661016949	9.5	2-14,1842-1830;15-21,1822-1816	1-1,1843-1843[UP5];x-x,1829-1823[BULt]	(((((((.......(((((((((((((.&.)))))))))))))-------)))))))	AAGAAAGUAACGACGGAAGAAAAGAAAG&AUUUUUUUUCUUUC-------CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4607_c1_g1_1834_TPlot.pdf
TRINITY_DN4607_c1_g1:1838	si_s73	TRINITY_DN4607_c1_g1	1827	1847	1838	-24.00	-16.20	0.675	6.5	1-12,1847-1836;14-18,1834-1830	13-13,1835-1835[SIL];19-21,1829-1827[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GACGGAAGAAAAGAAAGUAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4607_c1_g1_1838_TPlot.pdf
TRINITY_DN4607_c1_g1:1839	si_s72	TRINITY_DN4607_c1_g1	1828	1848	1839	-24.10	-16.90	0.701244813278008	5.5	1-13,1848-1836;15-19,1834-1830	14-14,1835-1835[SIL];20-21,1829-1828[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	ACGGAAGAAAAGAAAGUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4607_c1_g1_1839_TPlot.pdf
TRINITY_DN4607_c1_g1:1840	si_s71	TRINITY_DN4607_c1_g1	1829	1849	1840	-25.70	-17.10	0.665369649805448	5.5	2-14,1848-1836;16-20,1834-1830	1-1,1849-1849[UP5];15-15,1835-1835[SIL];21-21,1829-1829[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	CGGAAGAAAAGAAAGUAGAAU&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4607_c1_g1_1840_TPlot.pdf
TRINITY_DN4607_c1_g1:1841	si_s70	TRINITY_DN4607_c1_g1	1830	1850	1841	-25.80	-16.80	0.651162790697674	6.5	3-15,1848-1836;17-21,1834-1830	1-2,1850-1849[UP5];16-16,1835-1835[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GGAAGAAAAGAAAGUAGAAUC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4607_c1_g1_1841_TPlot.pdf
TRINITY_DN4607_c1_g1:2220	si_s773	TRINITY_DN4607_c1_g1	2209	2229	2220	-23.10	-15.80	0.683982683982684	13	4-17,2226-2213	1-3,2229-2227[UP5];18-21,2212-2209[UP3]	....((((((((((((((...&...))))))))))))))....	ACAAGUAGUAGUAGUGGUGGU&UUAAUUACUAUUGCUAUAAAA	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN4607_c1_g1_2220_TPlot.pdf
TRINITY_DN4607_c1_g1:2223	si_s770	TRINITY_DN4607_c1_g1	2212	2234	2223	-26.60	-18.50	0.695488721804511	10.5	2-6,2233-2229;7-20,2226-2213	1-1,2234-2234[UP5];x-x,2228-2227[BULt];21-21,2212-2212[UP3]	.((((((((((((((..(((((.&.)))))--)))))))))))))).	AGUAGUAGUAGUGGUGGUAGUCU&CGAUUA--AUUACUAUUGCUAUA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN4607_c1_g1_2223_TPlot.pdf
TRINITY_DN4607_c1_g1:2224	si_s769	TRINITY_DN4607_c1_g1	2213	2235	2224	-27.00	-18.00	0.666666666666667	11.5	3-7,2233-2229;8-21,2226-2213	1-2,2235-2234[UP5];x-x,2228-2227[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	GUAGUAGUAGUGGUGGUAGUCUA&ACGAUUA--AUUACUAUUGCUAU	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN4607_c1_g1_2224_TPlot.pdf
TRINITY_DN4608_c0_g1:938	si_s874	TRINITY_DN4608_c0_g1	927	949	938	-28.00	-18.50	0.660714285714286	9.5	2-6,948-944;7-18,941-930	1-1,949-949[UP5];x-x,943-942[BULt];19-21,929-927[UP3]	...((((((((((((..(((((.&.)))))--))))))))))))...	AUUUUUUUGGUUCUAUCAGGCCC&CGGUCU--UAGAACUAAAAAUAA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN4608_c0_g1_938_TPlot.pdf
TRINITY_DN4609_c0_g2:2516	si_s612	TRINITY_DN4609_c0_g2	2505	2525	2516	-28.20	-18.80	0.666666666666667	10.5	1-10,2525-2516;13-18,2513-2508	11-12,2515-2514[SIL];19-21,2507-2505[UP3]	...((((((..((((((((((&))))))))))..))))))...	GCAGCUUGGUCUUGAGAGAGG&UCUUUUUUAAAUCCAAGCGAU	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN4609_c0_g2_2516_TPlot.pdf
TRINITY_DN4609_c0_g2:451	si_a336	TRINITY_DN4609_c0_g2	440	461	451	-31.20	-20.80	0.666666666666667	7	1-5,461-457;6-15,455-446;18-21,443-440	x-x,456-456[BULt];16-17,445-444[SIL]	((((..((((((((((.(((((&)))))-))))))))))..))))	AUAUCGUUGGGACGAGCGGAUG&UAUUC-CUUGUCCCGAAAAUAU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN4609_c0_g2_451_TPlot.pdf
TRINITY_DN460_c0_g1:1081	si_s899	TRINITY_DN460_c0_g1	1064	1090	1081	-28.30	-18.92	0.668551236749117	17	1-11,1090-1080;15-21,1070-1064	12-14,1079-1071[AILt]	(((((((.........(((((((((((&)))))))))))------...)))))))	GAUUGAAUAUAAAAAGGAAGAGAAAGU&GCUUUCUCUUC------AAUUUCAAUU	3	0.999999969590209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN460_c0_g1_1081_TPlot.pdf
TRINITY_DN460_c0_g1:530	si_s459	TRINITY_DN460_c0_g1	519	539	530	-29.30	-20.10	0.686006825938567	9	1-7,539-533;10-19,530-521	8-9,532-531[SIL];20-21,520-519[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	GGUGGAUAUGGGUGGGUUGUU&AACAAUUAUCUCAUAUCCAAC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN460_c0_g1_530_TPlot.pdf
TRINITY_DN460_c0_g1:531	si_s458	TRINITY_DN460_c0_g1	520	540	531	-29.30	-22.60	0.771331058020478	8	1-8,540-533;11-20,530-521	9-10,532-531[SIL];21-21,520-520[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	GUGGAUAUGGGUGGGUUGUUG&CAACAAUUAUCUCAUAUCCAA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN460_c0_g1_531_TPlot.pdf
TRINITY_DN460_c0_g1:741	si_s210	TRINITY_DN460_c0_g1	730	750	741	-35.90	-23.70	0.66016713091922	8.5	1-4,750-747;6-12,745-739;14-20,737-731	5-5,746-746[SIL];13-13,738-738[SIL];21-21,730-730[UP3]	.(((((((.(((((((.((((&)))).))))))).))))))).	GGGUUUCGUGCAUGGCGGGUG&UACCAGUUGUGUUCGAAACCG	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s210_TRINITY_DN460_c0_g1_741_TPlot.pdf
TRINITY_DN460_c0_g1:742	si_s209	TRINITY_DN460_c0_g1	731	751	742	-36.20	-26.50	0.732044198895028	7.5	1-5,751-747;7-13,745-739;15-21,737-731	6-6,746-746[SIL];14-14,738-738[SIL]	(((((((.(((((((.(((((&))))).))))))).)))))))	GGUUUCGUGCAUGGCGGGUGC&GUACCAGUUGUGUUCGAAACC	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN460_c0_g1_742_TPlot.pdf
TRINITY_DN460_c0_g1:743	si_s208	TRINITY_DN460_c0_g1	732	752	743	-34.50	-23.40	0.678260869565217	8.5	2-6,751-747;8-14,745-739;16-21,737-732	1-1,752-752[UP5];7-7,746-746[SIL];15-15,738-738[SIL]	((((((.(((((((.(((((.&.))))).))))))).))))))	GUUUCGUGCAUGGCGGGUGCU&UGUACCAGUUGUGUUCGAAAC	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN460_c0_g1_743_TPlot.pdf
TRINITY_DN460_c0_g1:947	si_a597	TRINITY_DN460_c0_g1	936	956	947	-34.00	-23.50	0.691176470588235	5.5	1-10,956-947;11-13,945-943;15-21,942-936	x-x,946-946[BULt];14-14,x-x[BULq]	(((((((-(((.((((((((((&))))))))))-))).)))))))	GGAGUUG-GAACGAUUCUGUUC&GGACAGAAUU-UUCGCAAUUCC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a597_TRINITY_DN460_c0_g1_947_TPlot.pdf
TRINITY_DN460_c0_g1:987	si_a319	TRINITY_DN460_c0_g1	976	996	987	-22.40	-14.80	0.660714285714286	8.5	1-7,996-990;9-17,988-980	8-8,989-989[SIL];18-21,979-976[UP3]	....(((((((((.(((((((&))))))).)))))))))....	UGUUAGAAAAUCACGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN460_c0_g1_987_TPlot.pdf
TRINITY_DN46123_c0_g1:792	si_s46	TRINITY_DN46123_c0_g1	781	802	792	-25.00	-18.40	0.736	6.5	3-8,800-795;9-21,793-781	1-2,802-801[UP5];x-x,794-794[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UGACUUGAAAUCUGAAUUAUAA&UAAUAAUU-GGAUUUCAAGUUA	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN46123_c0_g1_792_TPlot.pdf
TRINITY_DN46123_c0_g1:793	si_s45	TRINITY_DN46123_c0_g1	782	803	793	-24.70	-17.30	0.700404858299595	8.5	4-9,800-795;10-21,793-782	1-3,803-801[UP5];x-x,794-794[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	GACUUGAAAUCUGAAUUAUAAU&UUAAUAAUU-GGAUUUCAAGUU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN46123_c0_g1_793_TPlot.pdf
TRINITY_DN46127_c0_g1:342	si_a410	TRINITY_DN46127_c0_g1	331	351	342	-17.80	-12.00	0.674157303370786	10.5	1-14,351-338	15-21,337-331[UP3]	.......((((((((((((((&)))))))))))))).......	ACAAUGAAGAUAUGGACAGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN46127_c0_g1_342_TPlot.pdf
TRINITY_DN46127_c0_g1:351	si_a401	TRINITY_DN46127_c0_g1	340	360	351	-22.60	-14.80	0.654867256637168	10	4-8,357-353;10-21,351-340	1-3,360-358[UP5];9-9,352-352[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AUAUGGACAGAAAGAUUCAAU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999997783	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN46127_c0_g1_351_TPlot.pdf
TRINITY_DN4614_c0_g1:3727	si_s422	TRINITY_DN4614_c0_g1	3716	3737	3727	-21.30	-14.90	0.699530516431925	10	3-7,3735-3731;8-20,3729-3717	1-2,3737-3736[UP5];x-x,3730-3730[BULt];21-21,3716-3716[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	UAUUAUUGUUGUGUCGGAGUUU&AUAUUCU-AUAUAACAAUAAUU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN4614_c0_g1_3727_TPlot.pdf
TRINITY_DN4618_c0_g1:1086	si_a285	TRINITY_DN4618_c0_g1	1075	1095	1086	-28.30	-18.40	0.65017667844523	11	2-13,1094-1083	1-1,1095-1095[UP5];14-21,1082-1075[UP3]	........((((((((((((.&.))))))))))))........	UUCUUUGCUCCGAGCGAUUUA&AAGAUCGCUUGGAUUUAAAAA	3	0.999998604714447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN4618_c0_g1_1086_TPlot.pdf
TRINITY_DN4618_c0_g1:1088	si_a283	TRINITY_DN4618_c0_g1	1077	1097	1088	-28.30	-18.40	0.65017667844523	13	4-15,1094-1083	1-3,1097-1095[UP5];16-21,1082-1077[UP3]	......((((((((((((...&...))))))))))))......	CUUUGCUCCGAGCGAUUUACC&AAAAGAUCGCUUGGAUUUAAA	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN4618_c0_g1_1088_TPlot.pdf
TRINITY_DN4618_c0_g1:1169	si_a67	TRINITY_DN4618_c0_g1	1157	1178	1169	-27.20	-17.82	0.655147058823529	7.5	1-11,1178-1168;15-17,1163-1161;19-21,1159-1157	12-14,1167-1164[AILt];18-18,1160-1160[SIL]	(((.(((....(((((((((((&)))))))))))-...))).)))	GGAUAACUCAAUUGAAAGAAGC&GCUUCUUUCAA-AUUGUUUUUC	3	0.999999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4618_c0_g1_1169_TPlot.pdf
TRINITY_DN4618_c0_g1:1845	si_s530	TRINITY_DN4618_c0_g1	1834	1857	1845	-29.50	-21.60	0.732203389830508	12.5	1-9,1857-1849;10-19,1845-1836	x-x,1848-1846[BULt];20-21,1835-1834[UP3]	..((((((((((...(((((((((&)))))))))---))))))))))..	CGUGGAUCAGAGUUUGUGGUUUCG&CGAAAUCAU---UUUUGAUCCGAU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN4618_c0_g1_1845_TPlot.pdf
TRINITY_DN4618_c0_g1:1850	si_s528	TRINITY_DN4618_c0_g1	1836	1859	1850	-29.40	-22.00	0.748299319727891	12	2-11,1858-1849;12-21,1845-1836	1-1,1859-1859[UP5];x-x,1848-1846[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	UGGAUCAGAGUUUGUGGUUUCGGG&UUCGAAAUCAU---UUUUGAUCCG	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN4618_c0_g1_1850_TPlot.pdf
TRINITY_DN4618_c0_g1:1851	si_s527	TRINITY_DN4618_c0_g1	1837	1860	1851	-28.00	-21.30	0.760714285714286	13	3-12,1858-1849;13-21,1845-1837	1-2,1860-1859[UP5];x-x,1848-1846[BULt]	(((((((((...((((((((((..&..))))))))))---)))))))))	GGAUCAGAGUUUGUGGUUUCGGGA&AUUCGAAAUCAU---UUUUGAUCC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN4618_c0_g1_1851_TPlot.pdf
TRINITY_DN4618_c0_g1:1852	si_a344	TRINITY_DN4618_c0_g1	1841	1861	1852	-28.50	-21.40	0.750877192982456	6	1-9,1861-1853;11-13,1851-1849;15-20,1847-1842	10-10,1852-1852[SIL];14-14,1848-1848[SIL];21-21,1841-1841[UP3]	.((((((.(((.(((((((((&))))))))).))).)))))).	CAGAGUUUGUGGUUUCGGGAC&GUCCCGAAAAUAUUAAUUCUA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN4618_c0_g1_1852_TPlot.pdf
TRINITY_DN4618_c0_g1:1853	si_a343	TRINITY_DN4618_c0_g1	1842	1862	1853	-28.80	-22.20	0.770833333333333	5	1-10,1862-1853;12-14,1851-1849;16-21,1847-1842	11-11,1852-1852[SIL];15-15,1848-1848[SIL]	((((((.(((.((((((((((&)))))))))).))).))))))	AGAGUUUGUGGUUUCGGGACA&UGUCCCGAAAAUAUUAAUUCU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN4618_c0_g1_1853_TPlot.pdf
TRINITY_DN4618_c0_g1:1854	si_a342	TRINITY_DN4618_c0_g1	1843	1863	1854	-28.20	-21.90	0.776595744680851	4.5	1-11,1863-1853;13-15,1851-1849;17-21,1847-1843	12-12,1852-1852[SIL];16-16,1848-1848[SIL]	(((((.(((.(((((((((((&))))))))))).))).)))))	GAGUUUGUGGUUUCGGGACAA&UUGUCCCGAAAAUAUUAAUUC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a342_TRINITY_DN4618_c0_g1_1854_TPlot.pdf
TRINITY_DN4618_c0_g1:1855	si_a341	TRINITY_DN4618_c0_g1	1844	1864	1855	-27.80	-18.90	0.679856115107914	4.5	2-12,1863-1853;14-16,1851-1849;18-21,1847-1844	1-1,1864-1864[UP5];13-13,1852-1852[SIL];17-17,1848-1848[SIL]	((((.(((.(((((((((((.&.))))))))))).))).))))	AGUUUGUGGUUUCGGGACAAA&CUUGUCCCGAAAAUAUUAAUU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN4618_c0_g1_1855_TPlot.pdf
TRINITY_DN4618_c0_g1:2528	si_s515	TRINITY_DN4618_c0_g1	2517	2538	2528	-24.80	-16.20	0.653225806451613	9.5	1-5,2538-2534;6-11,2532-2527;13-20,2525-2518	x-x,2533-2533[BULt];12-12,2526-2526[SIL];21-21,2517-2517[UP3]	.((((((((.((((((.(((((&)))))-)))))).)))))))).	CUUUCGGAUGGGGAGUCAUGGA&UCUAU-AUUCUUAAUUCGAAAU	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN4618_c0_g1_2528_TPlot.pdf
TRINITY_DN4618_c0_g1:2529	si_s514	TRINITY_DN4618_c0_g1	2518	2539	2529	-24.80	-16.80	0.67741935483871	7.5	1-6,2539-2534;7-12,2532-2527;14-21,2525-2518	x-x,2533-2533[BULt];13-13,2526-2526[SIL]	((((((((.((((((.((((((&))))))-)))))).))))))))	UUUCGGAUGGGGAGUCAUGGAA&UUCUAU-AUUCUUAAUUCGAAA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN4618_c0_g1_2529_TPlot.pdf
TRINITY_DN4618_c0_g1:2530	si_s513	TRINITY_DN4618_c0_g1	2519	2540	2530	-24.90	-16.90	0.678714859437751	7	1-7,2540-2534;8-13,2532-2527;15-21,2525-2519	x-x,2533-2533[BULt];14-14,2526-2526[SIL]	(((((((.((((((.(((((((&)))))))-)))))).)))))))	UUCGGAUGGGGAGUCAUGGAAU&AUUCUAU-AUUCUUAAUUCGAA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN4618_c0_g1_2530_TPlot.pdf
TRINITY_DN4618_c0_g1:2532	si_a320	TRINITY_DN4618_c0_g1	2522	2541	2532	-24.40	-16.60	0.680327868852459	9.5	4-16,2538-2526;18-21,2525-2522	1-3,2541-2539[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	GGAU-GGGGAGUCAUGGAAUC&UUAUCCAUGAUUUUUUUAUUC	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN4618_c0_g1_2532_TPlot.pdf
TRINITY_DN4619_c0_g1:4957	si_s77	TRINITY_DN4619_c0_g1	4946	4966	4957	-25.50	-16.90	0.662745098039216	7.5	3-14,4964-4953;16-18,4951-4949;20-21,4947-4946	1-2,4966-4965[UP5];15-15,4952-4952[SIL];19-19,4948-4948[SIL]	((.(((.((((((((((((..&..)))))))))))).))).))	GAUGAGUGGAAAGAAGAAGUA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4619_c0_g1_4957_TPlot.pdf
TRINITY_DN4619_c0_g1:5565	si_s81	TRINITY_DN4619_c0_g1	5554	5577	5565	-28.90	-19.10	0.660899653979239	12.5	1-6,5577-5572;7-15,5568-5560;17-21,5558-5554	x-x,5571-5569[BULt];16-16,5559-5559[SIL]	(((((.(((((((((...((((((&))))))---))))))))).)))))	GGAAGCGGAAGGGAAUGUGGAGGG&UUUUCU---UUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4619_c0_g1_5565_TPlot.pdf
TRINITY_DN461_c0_g1:1281	si_s310	TRINITY_DN461_c0_g1	1269	1289	1281	-32.10	-21.10	0.657320872274143	7.5	1-4,1289-1286;7-13,1284-1278;14-20,1276-1270	5-6,1285-1285[AILq];x-x,1277-1277[BULt];21-21,1269-1269[UP3]	.(((((((.(((((((.-((((&))))..)))))))-))))))).	CCGAGAAGAGACAGAAG-UUUG&CGAAAAUUCUGUC-CUUCUUGU	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN461_c0_g1_1281_TPlot.pdf
TRINITY_DN461_c0_g1:1524	si_s88	TRINITY_DN461_c0_g1	1513	1535	1524	-34.80	-23.90	0.686781609195402	7	1-3,1535-1533;4-9,1531-1526;11-21,1523-1513	x-x,1532-1532[BULt];10-10,1525-1524[AILt]	(((((((((((..((((((.(((&)))-))))))-.)))))))))))	GAAGCGAAGAACAAAGGAAUGGA&UCC-UUUCUU-CUUCUUCGCUUC	3	0.999999999890631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN461_c0_g1_1524_TPlot.pdf
TRINITY_DN461_c0_g1:1683	si_s899	TRINITY_DN461_c0_g1	1672	1692	1683	-28.30	-22.10	0.780918727915194	6.5	1-13,1692-1680;15-17,1678-1676	14-14,1679-1679[SIL];18-21,1675-1672[UP3]	....(((.(((((((((((((&))))))))))))).)))....	AUCCGGAUUUGAAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN461_c0_g1_1683_TPlot.pdf
TRINITY_DN461_c0_g1:1684	si_s898	TRINITY_DN461_c0_g1	1673	1693	1684	-30.70	-23.50	0.765472312703583	6	1-14,1693-1680;16-18,1678-1676	15-15,1679-1679[SIL];19-21,1675-1673[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	UCCGGAUUUGAAGAGGAAGCU&GGCUUUCUCUUCAAUUUCAAU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN461_c0_g1_1684_TPlot.pdf
TRINITY_DN461_c0_g1:1685	si_s897	TRINITY_DN461_c0_g1	1674	1694	1685	-31.30	-23.70	0.757188498402556	6.5	2-15,1693-1680;17-19,1678-1676	1-1,1694-1694[UP5];16-16,1679-1679[SIL];20-21,1675-1674[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	CCGGAUUUGAAGAGGAAGCUA&AGGCUUUCUCUUCAAUUUCAA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN461_c0_g1_1685_TPlot.pdf
TRINITY_DN461_c0_g1:1686	si_s896	TRINITY_DN461_c0_g1	1675	1695	1686	-31.60	-23.70	0.75	7.5	3-16,1693-1680;18-20,1678-1676	1-2,1695-1694[UP5];17-17,1679-1679[SIL];21-21,1675-1675[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	CGGAUUUGAAGAGGAAGCUAC&UAGGCUUUCUCUUCAAUUUCA	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN461_c0_g1_1686_TPlot.pdf
TRINITY_DN461_c0_g1:1687	si_s895	TRINITY_DN461_c0_g1	1676	1696	1687	-31.10	-23.30	0.7491961414791	8.5	4-17,1693-1680;19-21,1678-1676	1-3,1696-1694[UP5];18-18,1679-1679[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GGAUUUGAAGAGGAAGCUACU&AUAGGCUUUCUCUUCAAUUUC	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN461_c0_g1_1687_TPlot.pdf
TRINITY_DN461_c0_g1:1692	si_s890	TRINITY_DN461_c0_g1	1681	1701	1692	-29.50	-19.90	0.674576271186441	16.5	9-21,1693-1681	1-8,1701-1694[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGGAAGCUACUUGAAC&AAUAAAUAGGCUUUCUCUUCA	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN461_c0_g1_1692_TPlot.pdf
TRINITY_DN461_c0_g1:1882	si_s71	TRINITY_DN461_c0_g1	1866	1891	1882	-25.70	-16.90	0.657587548638132	10.5	1-13,1891-1879;14-19,1873-1868	x-x,1878-1874[BULt];20-21,1867-1866[UP3]	..((((((.....(((((((((((((&)))))))))))))-----))))))..	UCGAGAGACUACGAAAGAGGUAGAAG&CUUCUAUUUUUUU-----UCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN461_c0_g1_1882_TPlot.pdf
TRINITY_DN461_c0_g1:1883	si_s70	TRINITY_DN461_c0_g1	1867	1892	1883	-25.80	-16.90	0.655038759689922	10.5	2-14,1891-1879;15-20,1873-1868	1-1,1892-1892[UP5];x-x,1878-1874[BULt];21-21,1867-1867[UP3]	.((((((.....(((((((((((((.&.)))))))))))))-----)))))).	CGAGAGACUACGAAAGAGGUAGAAGA&ACUUCUAUUUUUUU-----UCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN461_c0_g1_1883_TPlot.pdf
TRINITY_DN461_c0_g1:1884	si_s69	TRINITY_DN461_c0_g1	1868	1893	1884	-23.40	-16.90	0.722222222222222	11.5	3-15,1891-1879;16-21,1873-1868	1-2,1893-1892[UP5];x-x,1878-1874[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	GAGAGACUACGAAAGAGGUAGAAGAC&AACUUCUAUUUUUUU-----UCUUUC	3	0.999999999999637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN461_c0_g1_1884_TPlot.pdf
TRINITY_DN461_c0_g1:1897	si_a784	TRINITY_DN461_c0_g1	1882	1907	1897	-24.70	-16.20	0.65587044534413	14.5	2-3,1906-1905;4-10,1903-1897;11-21,1892-1882	1-1,1907-1907[UP5];x-x,1904-1904[BULt];x-x,1896-1893[BULt]	(((((((((((....(((((((.((.&.))-)))))))----)))))))))))	GAGGUAGAAGACGUAGUAGAAGUAGG&ACU-CUUCUAU----UUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN461_c0_g1_1897_TPlot.pdf
TRINITY_DN461_c0_g1:2112	si_a362	TRINITY_DN461_c0_g1	2101	2121	2112	-28.00	-18.70	0.667857142857143	7	2-9,2120-2113;12-20,2110-2102	1-1,2121-2121[UP5];10-11,2112-2111[SIL];21-21,2101-2101[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	AUUUUGAUCCUUUCAAAAUGC&CUAUUUUGAUCGGAUCAAAAA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN461_c0_g1_2112_TPlot.pdf
TRINITY_DN461_c0_g1:381	si_a547	TRINITY_DN461_c0_g1	370	389	381	-26.90	-17.60	0.654275092936803	8	3-5,387-385;7-20,384-371	1-2,389-388[UP5];6-6,x-x[BULq];21-21,370-370[UP3]	.((((((((((((((-(((..&..))).)))))))))))))).	UGAUAGGGAAAUAGG-UGACC&GUUCAAUCUAUUUCUUUAUCU	3	0.999995920298892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN461_c0_g1_381_TPlot.pdf
TRINITY_DN4620_c0_g1:567	si_s500	TRINITY_DN4620_c0_g1	555	576	567	-22.80	-15.10	0.662280701754386	5	1-12,576-565;13-14,563-562;16-20,560-556	x-x,564-564[BULt];15-15,561-561[SIL];21-21,555-555[UP3]	.(((((.((.((((((((((((&))))))))))))-)).))))).	GGUAGGCUUAGUUUUGUUUAUA&UAUAAACAAAAC-AAUUCUAUA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN4620_c0_g1_567_TPlot.pdf
TRINITY_DN4620_c0_g1:568	si_s499	TRINITY_DN4620_c0_g1	556	577	568	-22.60	-14.70	0.650442477876106	4	2-13,576-565;14-15,563-562;17-21,560-556	1-1,577-577[UP5];x-x,564-564[BULt];16-16,561-561[SIL]	(((((.((.((((((((((((.&.))))))))))))-)).)))))	GUAGGCUUAGUUUUGUUUAUAA&AUAUAAACAAAAC-AAUUCUAU	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN4620_c0_g1_568_TPlot.pdf
TRINITY_DN4620_c0_g1:656	si_a337	TRINITY_DN4620_c0_g1	645	670	656	-30.80	-20.80	0.675324675324675	16	1-6,670-665;7-18,659-648	x-x,664-660[BULt];19-21,647-645[UP3]	...((((((((((((.....((((((&))))))-----))))))))))))...	UUCGUUUUUGGGGCAUCUGCGGGAAU&AUUCCU-----UGUCCCGAAAAUAUU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN4620_c0_g1_656_TPlot.pdf
TRINITY_DN4620_c0_g1:658	si_a335	TRINITY_DN4620_c0_g1	647	672	658	-31.10	-22.10	0.710610932475884	15.5	1-8,672-665;9-20,659-648	x-x,664-660[BULt];21-21,647-647[UP3]	.((((((((((((.....((((((((&))))))))-----)))))))))))).	CGUUUUUGGGGCAUCUGCGGGAAUGG&UUAUUCCU-----UGUCCCGAAAAUA	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN4620_c0_g1_658_TPlot.pdf
TRINITY_DN4621_c0_g1:1242	si_s217	TRINITY_DN4621_c0_g1	1231	1250	1242	-35.80	-24.60	0.687150837988827	9	1-3,1250-1248;5-9,1247-1243;12-20,1240-1232	4-4,x-x[BULq];10-11,1242-1241[SIL];21-21,1231-1231[UP3]	.(((((((((..(((((-(((&))).)))))..))))))))).	CUUCACGCGGGCUCGGA-GCA&UGUGUUCGAAACCGCGUGAAU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN4621_c0_g1_1242_TPlot.pdf
TRINITY_DN4621_c0_g1:1565	si_a532	TRINITY_DN4621_c0_g1	1554	1574	1565	-40.10	-26.90	0.670822942643391	8.5	2-3,1573-1572;6-7,1569-1568;9-20,1566-1555	1-1,1574-1574[UP5];4-5,1571-1570[SIL];8-8,1567-1567[SIL];21-21,1554-1554[UP3]	.((((((((((((.((..((.&.))..)).)))))))))))).	CUGAGCCGAUCGCCCGGCUGG&ACACGCGAGCGAUCGGUUCAA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN4621_c0_g1_1565_TPlot.pdf
TRINITY_DN4621_c0_g1:1576	si_s724	TRINITY_DN4621_c0_g1	1565	1586	1576	-31.70	-21.70	0.684542586750789	10	3-9,1584-1578;10-15,1576-1571;17-21,1569-1565	1-2,1586-1585[UP5];x-x,1577-1577[BULt];16-16,1570-1570[SIL]	(((((.((((((.(((((((..&..)))))))-)))))).)))))	GCCCGGCUGGGUCAGUGUCUCG&AAAGAUAUU-AUCUAGACGGGU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN4621_c0_g1_1576_TPlot.pdf
TRINITY_DN4621_c0_g1:2923	si_a66	TRINITY_DN4621_c0_g1	2912	2932	2923	-26.70	-18.30	0.685393258426966	9	1-3,2932-2930;5-16,2928-2917	4-4,2929-2929[SIL];17-21,2916-2912[UP3]	.....((((((((((((.(((&))).)))))))))))).....	UGUCUCGGUUUGAAGGAUGCG&CGCUUCUUUCAAAUUGUUUUU	3	0.999999993730206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4621_c0_g1_2923_TPlot.pdf
TRINITY_DN4621_c0_g1:2924	si_a65	TRINITY_DN4621_c0_g1	2913	2933	2924	-27.70	-19.70	0.711191335740072	8	1-4,2933-2930;6-17,2928-2917	5-5,2929-2929[SIL];18-21,2916-2913[UP3]	....((((((((((((.((((&)))).))))))))))))....	GUCUCGGUUUGAAGGAUGCGA&UCGCUUCUUUCAAAUUGUUUU	2	0.973923522285718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN4621_c0_g1_2924_TPlot.pdf
TRINITY_DN4621_c0_g1:2925	si_a64	TRINITY_DN4621_c0_g1	2914	2934	2925	-29.40	-19.90	0.67687074829932	8	2-5,2933-2930;7-18,2928-2917	1-1,2934-2934[UP5];6-6,2929-2929[SIL];19-21,2916-2914[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UCUCGGUUUGAAGGAUGCGAU&CUCGCUUCUUUCAAAUUGUUU	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN4621_c0_g1_2925_TPlot.pdf
TRINITY_DN4621_c0_g1:2926	si_a63	TRINITY_DN4621_c0_g1	2915	2935	2926	-30.20	-19.90	0.658940397350993	9	3-6,2933-2930;8-19,2928-2917	1-2,2935-2934[UP5];7-7,2929-2929[SIL];20-21,2916-2915[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	CUCGGUUUGAAGGAUGCGAUG&ACUCGCUUCUUUCAAAUUGUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN4621_c0_g1_2926_TPlot.pdf
TRINITY_DN4621_c0_g1:3203	si_a286	TRINITY_DN4621_c0_g1	3191	3212	3203	-28.30	-18.90	0.667844522968198	11	2-11,3211-3202;12-15,3200-3197	1-1,3212-3212[UP5];x-x,3201-3201[BULt];16-21,3196-3191[UP3]	......((((.((((((((((.&.))))))))))-))))......	AAGGACGAGUGCCGAGCGAUCC&AGAUCGCUUGG-AUUUAAAAAA	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN4621_c0_g1_3203_TPlot.pdf
TRINITY_DN4621_c0_g1:3204	si_a285	TRINITY_DN4621_c0_g1	3192	3213	3204	-28.30	-18.90	0.667844522968198	12	3-12,3211-3202;13-16,3200-3197	1-2,3213-3212[UP5];x-x,3201-3201[BULt];17-21,3196-3192[UP3]	.....((((.((((((((((..&..))))))))))-)))).....	AGGACGAGUGCCGAGCGAUCCG&AAGAUCGCUUGG-AUUUAAAAA	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN4621_c0_g1_3204_TPlot.pdf
TRINITY_DN4621_c0_g1:3205	si_a284	TRINITY_DN4621_c0_g1	3193	3214	3205	-28.30	-18.90	0.667844522968198	12	4-13,3211-3202;14-17,3200-3197	1-3,3214-3212[UP5];x-x,3201-3201[BULt];18-21,3196-3193[UP3]	....((((.((((((((((...&...))))))))))-))))....	GGACGAGUGCCGAGCGAUCCGG&AAAGAUCGCUUGG-AUUUAAAA	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN4621_c0_g1_3205_TPlot.pdf
TRINITY_DN4621_c0_g1:4015	si_a323	TRINITY_DN4621_c0_g1	4004	4022	4015	-26.80	-17.50	0.652985074626866	10	1-3,4022-4020;6-19,4019-4006	4-5,x-x[BULq];20-21,4005-4004[UP3]	..((((((((((((((--(((&)))..))))))))))))))..	AUGGGAUAGAGAGGUC--GGA&UCCAUGAUUUUUUUAUUCCUU	4	0.99999999855241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN4621_c0_g1_4015_TPlot.pdf
TRINITY_DN4622_c0_g1:2247	si_s47	TRINITY_DN4622_c0_g1	2236	2256	2247	-26.30	-18.20	0.692015209125475	11	6-9,2251-2248;11-21,2246-2236	1-5,2256-2252[UP5];10-10,2247-2247[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	CUAACUUGAAAGCCAAAUUAC&AAUAAUUGGAUUUCAAGUUAG	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN4622_c0_g1_2247_TPlot.pdf
TRINITY_DN4622_c0_g1:2390	si_s67	TRINITY_DN4622_c0_g1	2379	2399	2390	-25.60	-18.10	0.70703125	11	5-21,2395-2379	1-4,2399-2396[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGGAAAGAGGUGGAAGGAAA&GCAACUUCUAUUUUUUUUCUU	4	0.999986722548164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4622_c0_g1_2390_TPlot.pdf
TRINITY_DN4622_c0_g1:2393	si_s79	TRINITY_DN4622_c0_g1	2380	2402	2393	-26.20	-18.50	0.706106870229008	5.5	1-12,2402-2391;13-18,2389-2384;19-21,2382-2380	x-x,2390-2390[BULt];x-x,2383-2383[BULt]	(((.((((((.((((((((((((&))))))))))))-))))))-)))	AGGAAAGAGGUGGAAGGAAAAAA&UUUUUUCUUUCC-UUUCUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4622_c0_g1_2393_TPlot.pdf
TRINITY_DN4622_c0_g1:2453	si_a406	TRINITY_DN4622_c0_g1	2442	2462	2453	-19.80	-13.40	0.676767676767677	8	2-16,2461-2447	1-1,2462-2462[UP5];17-21,2446-2442[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GUGUUGUGUAAACAAAAUAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4622_c0_g1_2453_TPlot.pdf
TRINITY_DN4622_c0_g1:2454	si_a405	TRINITY_DN4622_c0_g1	2443	2463	2454	-19.80	-13.40	0.676767676767677	9	3-17,2461-2447	1-2,2463-2462[UP5];18-21,2446-2443[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGUUGUGUAAACAAAAUAAAC&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4622_c0_g1_2454_TPlot.pdf
TRINITY_DN4625_c0_g1:815	si_a501	TRINITY_DN4625_c0_g1	803	824	815	-33.50	-23.20	0.692537313432836	6	2-10,823-815;11-17,813-807;19-21,805-803	1-1,824-824[UP5];x-x,814-814[BULt];18-18,806-806[SIL]	(((.(((((((.(((((((((.&.)))))))))-))))))).)))	UUUGGAGGAGGUACGAAAAACC&CGUUUUUCGU-CUUCCUUGGAA	4	0.999994967703848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN4625_c0_g1_815_TPlot.pdf
TRINITY_DN4626_c0_g1:3436	si_a769	TRINITY_DN4626_c0_g1	3427	3445	3436	-26.70	-19.00	0.711610486891386	3	1-12,3445-3434;15-21,3433-3427	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AAGAGUU--AUCAAUCAGAAA&UUUUUGAUUGAUUCAACUCUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN4626_c0_g1_3436_TPlot.pdf
TRINITY_DN4626_c0_g1:4414	si_a308	TRINITY_DN4626_c0_g1	4404	4423	4414	-32.70	-21.70	0.663608562691131	8.5	3-4,4421-4420;6-13,4418-4411;15-20,4410-4405	1-2,4423-4422[UP5];5-5,4419-4419[SIL];14-14,x-x[BULq];21-21,4404-4404[UP3]	.((((((-((((((((.((..&..)).)))))))).)))))).	GGUGGAU-AGUCCAAGGGAUU&AUUCGCUUGGAUUUAUCCAUG	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN4626_c0_g1_4414_TPlot.pdf
TRINITY_DN4626_c0_g1:6258	si_s83	TRINITY_DN4626_c0_g1	6246	6267	6258	-30.90	-20.80	0.673139158576052	7	2-3,6266-6265;5-10,6263-6258;11-20,6256-6247	1-1,6267-6267[UP5];4-4,6264-6264[SIL];x-x,6257-6257[BULt];21-21,6246-6246[UP3]	.((((((((((.((((((.((.&.)).))))))-)))))))))).	UAAGAAGAAGAUGAGGAAUGAU&UUCUUUCCUU-UCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4626_c0_g1_6258_TPlot.pdf
TRINITY_DN4626_c0_g1:98	si_s550	TRINITY_DN4626_c0_g1	87	107	98	-20.30	-14.40	0.70935960591133	6	1-16,107-92	17-21,91-87[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUAAAAUUAAUUUUAUUUUGA&UCAAAAUAGAAUUAAUAUUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN4626_c0_g1_98_TPlot.pdf
TRINITY_DN4626_c0_g1:99	si_s549	TRINITY_DN4626_c0_g1	88	108	99	-20.50	-14.40	0.702439024390244	6	2-17,107-92	1-1,108-108[UP5];18-21,91-88[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAAAAUUAAUUUUAUUUUGAG&AUCAAAAUAGAAUUAAUAUUU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN4626_c0_g1_99_TPlot.pdf
TRINITY_DN4627_c0_g1:668	si_a549	TRINITY_DN4627_c0_g1	657	676	668	-29.50	-19.30	0.654237288135593	5	1-4,676-673;6-19,672-659	5-5,x-x[BULq];20-21,658-657[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	GCAGAUAAAGAAAUGG-UUGA&UCAAUCUAUUUCUUUAUCUCC	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN4627_c0_g1_668_TPlot.pdf
TRINITY_DN4627_c0_g1:932	si_a556	TRINITY_DN4627_c0_g1	921	942	932	-33.40	-22.70	0.679640718562874	8	2-9,941-934;10-15,932-927;17-20,925-922	1-1,942-942[UP5];x-x,933-933[BULt];16-16,926-926[SIL];21-21,921-921[UP3]	.((((.((((((.((((((((.&.))))))))-)))))).)))).	GUCACUGGGAGAUUGGAGAGAG&AUUUCUUUA-UCUCCCCGUGAA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN4627_c0_g1_932_TPlot.pdf
TRINITY_DN4627_c1_g1:3919	si_s599	TRINITY_DN4627_c1_g1	3908	3929	3919	-27.80	-19.70	0.70863309352518	9.5	4-6,3926-3924;7-21,3922-3908	1-3,3929-3927[UP5];x-x,3923-3923[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	GAAAAGGGUUCGUUUAGGAGUG&AAAUCC-AAGCGAAUCUUUUUU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN4627_c1_g1_3919_TPlot.pdf
TRINITY_DN4628_c0_g1:357	si_s806	TRINITY_DN4628_c0_g1	346	367	357	-28.60	-18.80	0.657342657342657	12.5	4-6,364-362;7-19,360-348	1-3,367-365[UP5];x-x,361-361[BULt];20-21,347-346[UP3]	..(((((((((((((.(((...&...)))-)))))))))))))..	AUGAAGAGGUGAUGGCAGAGAC&UUAUCU-UCGUUACCUUUUCUU	4	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN4628_c0_g1_357_TPlot.pdf
TRINITY_DN4628_c1_g1:12	si_s733	TRINITY_DN4628_c1_g1	1	21	12	-34.00	-22.40	0.658823529411765	8.5	3-13,19-9;16-19,6-3	1-2,21-20[UP5];14-15,8-7[SIL];20-21,2-1[UP3]	..((((..(((((((((((..&..)))))))))))..))))..	UUUCUGCGCACCUGUCUAGCA&AUCUAGACGGGUGAAUAGAUU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s733_TRINITY_DN4628_c1_g1_12_TPlot.pdf
TRINITY_DN4629_c0_g1:818	si_s73	TRINITY_DN4629_c0_g1	807	827	818	-24.00	-16.20	0.675	7	1-8,827-820;10-13,818-815;16-20,812-808	9-9,819-819[SIL];14-15,814-813[SIL];21-21,807-807[UP3]	.(((((..((((.((((((((&)))))))).))))..))))).	UAAGGAUUGGAACAAAGUAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4629_c0_g1_818_TPlot.pdf
TRINITY_DN4629_c0_g1:819	si_s72	TRINITY_DN4629_c0_g1	808	828	819	-24.10	-17.10	0.70954356846473	5.5	1-9,828-820;11-14,818-815;17-21,812-808	10-10,819-819[SIL];15-16,814-813[SIL]	(((((..((((.(((((((((&))))))))).))))..)))))	AAGGAUUGGAACAAAGUAGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999751805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4629_c0_g1_819_TPlot.pdf
TRINITY_DN4629_c0_g1:822	si_a793	TRINITY_DN4629_c0_g1	808	831	822	-28.50	-21.20	0.743859649122807	9	1-11,831-821;12-19,817-810	x-x,820-818[BULt];20-21,809-808[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	AAGGAUUGGAACAAAGUAGAAAAA&UUUUUCUAUUU---UCCAAUCCGA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN4629_c0_g1_822_TPlot.pdf
TRINITY_DN4629_c0_g1:823	si_a792	TRINITY_DN4629_c0_g1	809	832	823	-27.60	-21.20	0.768115942028985	9	2-12,831-821;13-20,817-810	1-1,832-832[UP5];x-x,820-818[BULt];21-21,809-809[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	AGGAUUGGAACAAAGUAGAAAAAG&AUUUUUCUAUUU---UCCAAUCCG	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN4629_c0_g1_823_TPlot.pdf
TRINITY_DN4629_c0_g1:824	si_a791	TRINITY_DN4629_c0_g1	810	833	824	-26.50	-20.80	0.784905660377359	7	3-13,831-821;14-21,817-810	1-2,833-832[UP5];x-x,820-818[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	GGAUUGGAACAAAGUAGAAAAAGA&UAUUUUUCUAUUU---UCCAAUCC	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN4629_c0_g1_824_TPlot.pdf
TRINITY_DN4629_c0_g1:825	si_a790	TRINITY_DN4629_c0_g1	811	834	825	-25.80	-17.50	0.678294573643411	9	4-14,831-821;15-21,817-811	1-3,834-832[UP5];x-x,820-818[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	GAUUGGAACAAAGUAGAAAAAGAA&CUAUUUUUCUAUUU---UCCAAUC	2	0.998204808553084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4629_c0_g1_825_TPlot.pdf
TRINITY_DN462_c0_g1:25	si_s80	TRINITY_DN462_c0_g1	14	34	25	-28.20	-19.30	0.684397163120567	4.5	1-9,34-26;12-21,23-14	10-11,25-24[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GAAGAAGGAAUUAAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN462_c0_g1_25_TPlot.pdf
TRINITY_DN462_c0_g1:2882	si_a787	TRINITY_DN462_c0_g1	2871	2891	2882	-26.30	-17.80	0.67680608365019	7.5	1-4,2891-2888;7-19,2885-2873	5-6,2887-2886[SIL];20-21,2872-2871[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	ACGAAGAUAGGAAAACUGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999992029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN462_c0_g1_2882_TPlot.pdf
TRINITY_DN462_c0_g1:2885	si_a784	TRINITY_DN462_c0_g1	2874	2894	2885	-24.70	-16.30	0.659919028340081	8	3-7,2892-2888;10-21,2885-2874	1-2,2894-2893[UP5];8-9,2887-2886[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	AAGAUAGGAAAACUGAAGAAU&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN462_c0_g1_2885_TPlot.pdf
TRINITY_DN462_c0_g1:4728	si_a283	TRINITY_DN462_c0_g1	4717	4737	4728	-28.30	-18.90	0.667844522968198	6	1-13,4737-4725;16-20,4722-4718	14-15,4724-4723[SIL];21-21,4717-4717[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	AUUAAAAACAGGUGGUCUUUU&AAAAGAUCGCUUGGAUUUAAA	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN462_c0_g1_4728_TPlot.pdf
TRINITY_DN462_c0_g1:4729	si_a282	TRINITY_DN462_c0_g1	4718	4738	4729	-30.30	-20.00	0.66006600660066	5.5	1-14,4738-4725;17-21,4722-4718	15-16,4724-4723[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	UUAAAAACAGGUGGUCUUUUU&GAAAAGAUCGCUUGGAUUUAA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN462_c0_g1_4729_TPlot.pdf
TRINITY_DN462_c0_g1:5207	si_a340	TRINITY_DN462_c0_g1	5195	5216	5207	-30.20	-20.20	0.66887417218543	8	1-3,5216-5214;5-12,5212-5205;15-21,5201-5195	4-4,5213-5213[SIL];13-14,5204-5202[AILt]	(((((((...((((((((.(((&))).))))))))-..)))))))	AUUGAUGAAAUUCGGGACUGGG&CCUUGUCCCGAA-AAUAUUAAU	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a340_TRINITY_DN462_c0_g1_5207_TPlot.pdf
TRINITY_DN462_c0_g1:5358	si_a639	TRINITY_DN462_c0_g1	5347	5367	5358	-23.60	-15.58	0.660169491525424	11	1-4,5367-5364;8-18,5360-5350	5-7,5363-5361[SIL];19-21,5349-5347[UP3]	...(((((((((((...((((&))))...)))))))))))...	AUCUGUUGCUCAAAUACGUCG&CGAUUUUUUUGAGUAAUAUAU	2	0.999990832177071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN462_c0_g1_5358_TPlot.pdf
TRINITY_DN462_c0_g1:5359	si_a638	TRINITY_DN462_c0_g1	5348	5368	5359	-24.40	-16.98	0.695901639344262	10	1-5,5368-5364;9-19,5360-5350	6-8,5363-5361[SIL];20-21,5349-5348[UP3]	..(((((((((((...(((((&)))))...)))))))))))..	UCUGUUGCUCAAAUACGUCGA&UCGAUUUUUUUGAGUAAUAUA	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN462_c0_g1_5359_TPlot.pdf
TRINITY_DN462_c0_g1:5360	si_a637	TRINITY_DN462_c0_g1	5349	5369	5360	-25.80	-18.58	0.72015503875969	9.5	1-6,5369-5364;10-20,5360-5350	7-9,5363-5361[SIL];21-21,5349-5349[UP3]	.(((((((((((...((((((&))))))...))))))))))).	CUGUUGCUCAAAUACGUCGAU&GUCGAUUUUUUUGAGUAAUAU	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN462_c0_g1_5360_TPlot.pdf
TRINITY_DN462_c0_g1:5361	si_a636	TRINITY_DN462_c0_g1	5350	5370	5361	-26.30	-19.48	0.740684410646388	9	1-7,5370-5364;11-21,5360-5350	8-10,5363-5361[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	UGUUGCUCAAAUACGUCGAUA&UGUCGAUUUUUUUGAGUAAUA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN462_c0_g1_5361_TPlot.pdf
TRINITY_DN462_c0_g1:5362	si_a635	TRINITY_DN462_c0_g1	5351	5371	5362	-26.10	-18.28	0.700383141762452	10	2-8,5370-5364;12-21,5360-5351	1-1,5371-5371[UP5];9-11,5363-5361[SIL]	((((((((((...(((((((.&.)))))))...))))))))))	GUUGCUCAAAUACGUCGAUAA&AUGUCGAUUUUUUUGAGUAAU	2	0.998313119563257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN462_c0_g1_5362_TPlot.pdf
TRINITY_DN462_c0_g1:55	si_s80	TRINITY_DN462_c0_g1	44	64	55	-28.20	-19.30	0.684397163120567	4.5	1-9,64-56;12-21,53-44	10-11,55-54[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GAAGAAGGAAUUAAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN462_c0_g1_55_TPlot.pdf
TRINITY_DN462_c0_g1:809	si_a630	TRINITY_DN462_c0_g1	798	818	809	-25.80	-16.80	0.651162790697674	7.5	2-18,817-801	1-1,818-818[UP5];19-21,800-798[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UACAAGAAAUCGAUAUAGUGU&GUAUUAUGUCGAUUUUUUUGA	2	0.999993366716197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN462_c0_g1_809_TPlot.pdf
TRINITY_DN462_c0_g1:810	si_a629	TRINITY_DN462_c0_g1	799	819	810	-26.30	-17.50	0.665399239543726	6.5	1-19,819-801	20-21,800-799[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACAAGAAAUCGAUAUAGUGUG&CGUAUUAUGUCGAUUUUUUUG	3	0.999985095982078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN462_c0_g1_810_TPlot.pdf
TRINITY_DN462_c0_g1:814	si_a625	TRINITY_DN462_c0_g1	803	823	814	-30.60	-20.70	0.676470588235294	8	3-21,821-803	1-2,823-822[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAAAUCGAUAUAGUGUGUCAU&UAGGCGUAUUAUGUCGAUUUU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN462_c0_g1_814_TPlot.pdf
TRINITY_DN462_c0_g1:956	si_s78	TRINITY_DN462_c0_g1	942	966	956	-26.20	-17.50	0.66793893129771	8.5	1-8,966-959;9-14,957-952;15-20,948-943	x-x,958-958[BULt];x-x,951-949[BULt];21-21,942-942[UP3]	.((((((...((((((.((((((((&))))))))-))))))---)))))).	UGAGGAACACAGGAAAUGAAGAGAA&UUUUUUUC-UUUCCU---UUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN462_c0_g1_956_TPlot.pdf
TRINITY_DN462_c0_g1:959	si_s76	TRINITY_DN462_c0_g1	944	968	959	-23.60	-15.80	0.669491525423729	7.5	1-10,968-959;11-16,957-952;17-21,948-944	x-x,958-958[BULt];x-x,951-949[BULt]	(((((...((((((.((((((((((&))))))))))-))))))---)))))	AGGAACACAGGAAAUGAAGAGAAAU&AUUUUUUUUC-UUUCCU---UUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN462_c0_g1_959_TPlot.pdf
TRINITY_DN462_c0_g2:101	si_a463	TRINITY_DN462_c0_g2	90	110	101	-19.70	-14.30	0.725888324873097	3.5	1-5,110-106;7-20,104-91	6-6,105-105[SIL];21-21,90-90[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	UUAAUUAUAUAUUAUUUAUAA&UUAUAUAUAAUAUGUAAUUAU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN462_c0_g2_101_TPlot.pdf
TRINITY_DN4630_c1_g1:328	si_s798	TRINITY_DN4630_c1_g1	316	336	328	-29.30	-19.10	0.651877133105802	8.5	1-7,336-330;10-15,328-323;16-21,321-316	8-9,329-329[AILq];x-x,322-322[BULt]	((((((.((((((.-(((((((&)))))))..))))))-))))))	GUGAUGCAGGAUAU-GUACGGG&CUCGUAUUUUAUCUU-CGUUAC	2	0.999116901745928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4630_c1_g1_328_TPlot.pdf
TRINITY_DN4631_c0_g2:122	si_a784	TRINITY_DN4631_c0_g2	111	131	122	-24.70	-16.18	0.655060728744939	10	1-8,131-124;12-17,120-115	9-11,123-121[SIL];18-21,114-111[UP3]	....((((((...((((((((&))))))))...))))))....	AUGUUAGAAAUUGAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4631_c0_g2_122_TPlot.pdf
TRINITY_DN4632_c0_g1:534	si_a403	TRINITY_DN4632_c0_g1	523	543	534	-22.00	-14.40	0.654545454545455	7	1-15,543-529;17-19,527-525	16-16,528-528[SIL];20-21,524-523[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UUAUAAGAGCAAAGCGAUUUU&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN4632_c0_g1_534_TPlot.pdf
TRINITY_DN4632_c0_g1:538	si_a399	TRINITY_DN4632_c0_g1	527	547	538	-22.60	-15.30	0.676991150442478	8	1-3,547-545;5-19,543-529	4-4,544-544[SIL];20-21,528-527[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AAGAGCAAAGCGAUUUUUUAU&AUAUAGAAUUGUUUUGUUUAU	3	0.999999734700928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN4632_c0_g1_538_TPlot.pdf
TRINITY_DN4632_c0_g1:540	si_a397	TRINITY_DN4632_c0_g1	529	549	540	-24.00	-16.40	0.683333333333333	6.5	2-5,548-545;7-21,543-529	1-1,549-549[UP5];6-6,544-544[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	GAGCAAAGCGAUUUUUUAUUG&GAAUAUAGAAUUGUUUUGUUU	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN4632_c0_g1_540_TPlot.pdf
TRINITY_DN46340_c0_g1:364	si_a140	TRINITY_DN46340_c0_g1	353	374	364	-25.20	-17.40	0.69047619047619	10.5	5-9,370-366;10-21,364-353	1-4,374-371[UP5];x-x,365-365[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	GAGACAGCAACGAAUUAAAUCA&GUAAUUAAU-CGUUGUUGUUUU	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN46340_c0_g1_364_TPlot.pdf
TRINITY_DN4634_c10_g1:188	si_a445	TRINITY_DN4634_c10_g1	170	198	188	-27.30	-18.80	0.688644688644689	17.5	1-8,198-191;9-11,189-187;12-21,179-170	x-x,190-190[BULt];x-x,186-180[BULt]	((((((((((.......(((.((((((((&))))))))-)))-------))))))))))	UAACAGCAAUAAAUGCCUGUGCUCAUAUC&GAUAUGAG-AUA-------AUUGUUGUUA	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN4634_c10_g1_188_TPlot.pdf
TRINITY_DN4634_c1_g1:841	si_s388	TRINITY_DN4634_c1_g1	831	854	841	-37.80	-25.90	0.685185185185185	14.5	1-8,854-847;9-10,842-841;12-20,840-832	x-x,846-843[BULt];11-11,x-x[BULq];21-21,831-831[UP3]	.(((((((((-((....((((((((&))))))))----)).))))))))).	AUCCUUGGGG-GUCCAAGGGGCGGA&UCCGCCUU----ACAUUCCAAGGAA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s388_TRINITY_DN4634_c1_g1_841_TPlot.pdf
TRINITY_DN4638_c0_g1:1219	si_a384	TRINITY_DN4638_c0_g1	1208	1228	1219	-25.80	-16.86	0.653488372093023	11	1-9,1228-1220;14-21,1215-1208	10-13,1219-1216[SIL]	((((((((....(((((((((&)))))))))....))))))))	CUGUGUUCCUCUUUUGGAGUC&GAUUUCGAAUUAAGAAUAUAG	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a384_TRINITY_DN4638_c0_g1_1219_TPlot.pdf
TRINITY_DN4638_c0_g1:152	si_s73	TRINITY_DN4638_c0_g1	139	161	152	-24.00	-17.00	0.708333333333333	6	2-15,160-147;16-20,144-140	1-1,161-161[UP5];x-x,146-145[BULt];21-21,139-139[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	CAAGGACGAAGGAAAAAAAUGGU&UCUAUUUUUUUUCUU--UCCUUU	2	0.999999999978623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4638_c0_g1_152_TPlot.pdf
TRINITY_DN4638_c0_g1:153	si_s72	TRINITY_DN4638_c0_g1	140	162	153	-24.10	-17.00	0.705394190871369	6.5	3-16,160-147;17-21,144-140	1-2,162-161[UP5];x-x,146-145[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	AAGGACGAAGGAAAAAAAUGGUU&UUCUAUUUUUUUUCUU--UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4638_c0_g1_153_TPlot.pdf
TRINITY_DN4642_c0_g1:2058	si_a19	TRINITY_DN4642_c0_g1	2045	2070	2058	-27.00	-17.80	0.659259259259259	13.5	1-8,2070-2063;9-15,2059-2053;16-21,2050-2045	x-x,2062-2060[BULt];x-x,2052-2051[BULt]	((((((..(((((((...((((((((&))))))))---)))))))--))))))	GGAACUUUGAGGAUGUAAGAUGGGCU&AGCCUAUU---UAUUUUU--AGUUCU	3	0.999999124105573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4642_c0_g1_2058_TPlot.pdf
TRINITY_DN4642_c0_g1:2059	si_a18	TRINITY_DN4642_c0_g1	2046	2071	2059	-26.30	-17.80	0.67680608365019	12.5	1-9,2071-2063;10-16,2059-2053;17-21,2050-2046	x-x,2062-2060[BULt];x-x,2052-2051[BULt]	(((((..(((((((...(((((((((&)))))))))---)))))))--)))))	GAACUUUGAGGAUGUAAGAUGGGCUU&AAGCCUAUU---UAUUUUU--AGUUC	2	0.994764405127733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN4642_c0_g1_2059_TPlot.pdf
TRINITY_DN4642_c0_g1:2064	si_s793	TRINITY_DN4642_c0_g1	2053	2073	2064	-30.50	-20.06	0.657704918032787	10	2-10,2072-2064;15-21,2059-2053	1-1,2073-2073[UP5];11-14,2063-2060[SIL]	(((((((....(((((((((.&.)))))))))....)))))))	GAGGAUGUAAGAUGGGCUUGC&ACAAGCUCGUAUUUUAUCUUC	2	0.966134296826891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN4642_c0_g1_2064_TPlot.pdf
TRINITY_DN4642_c0_g1:759	si_a535	TRINITY_DN4642_c0_g1	744	769	759	-39.60	-26.48	0.668686868686869	11.5	1-4,769-766;6-14,763-755;16-21,749-744	5-5,765-764[AILt];15-15,754-750[AILt]	((((((.....(((((((((..((((&))))-.)))))))))----.))))))	GGGUUGCGCCUGCCGAUCGUGACGCG&CGCG-AGCGAUCGGU----UCAAUCU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN4642_c0_g1_759_TPlot.pdf
TRINITY_DN4643_c0_g1:196	si_a883	TRINITY_DN4643_c0_g1	185	206	196	-27.20	-18.62	0.684558823529412	10.5	1-5,206-202;9-21,197-185	6-8,201-198[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	UGUUAUUGUAUUGUAUGGCAGC&GUUGC-AAUCAAUAUAGUAAUA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN4643_c0_g1_196_TPlot.pdf
TRINITY_DN4645_c0_g1:2644	si_s678	TRINITY_DN4645_c0_g1	2633	2653	2644	-25.20	-16.40	0.650793650793651	10	2-15,2652-2639	1-1,2653-2653[UP5];16-21,2638-2633[UP3]	......((((((((((((((.&.))))))))))))))......	GCGCAAUCAUGUUUCUGUGGG&AUUAUAGAAACAUGAGUUUAA	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN4645_c0_g1_2644_TPlot.pdf
TRINITY_DN4645_c0_g1:6292	si_a310	TRINITY_DN4645_c0_g1	6280	6302	6292	-33.70	-22.40	0.664688427299703	7	1-7,6302-6296;8-13,6294-6289;15-15,6287-6287;16-21,6285-6280	x-x,6295-6295[BULt];14-14,6288-6288[SIL];x-x,6286-6286[BULt]	((((((.(.((((((.(((((((&)))))))-)))))).)-))))))	GUCGUGCGCUAGAUCACGAGCGA&UCGCUUG-GAUUUAUC-CAUGAU	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN4645_c0_g1_6292_TPlot.pdf
TRINITY_DN4645_c0_g1:6314	si_s806	TRINITY_DN4645_c0_g1	6303	6323	6314	-28.60	-20.50	0.716783216783217	10	2-5,6322-6319;8-19,6316-6305	1-1,6323-6323[UP5];6-7,6318-6317[SIL];20-21,6304-6303[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	AUGAAAAGGUGGCGUCGAUGC&UUAUCUUCGUUACCUUUUCUU	2	0.992763914805312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN4645_c0_g1_6314_TPlot.pdf
TRINITY_DN4649_c2_g1:3581	si_s574	TRINITY_DN4649_c2_g1	3570	3592	3581	-26.20	-18.00	0.687022900763359	5	1-5,3592-3588;6-7,3586-3585;8-21,3583-3570	x-x,3587-3587[BULt];x-x,3584-3584[BULt]	((((((((((((((.((.(((((&)))))-))-))))))))))))))	AUGAUUUUUUUAUUACUAUUGUC&GACAA-GG-AAUAAAAAAAUCAU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN4649_c2_g1_3581_TPlot.pdf
TRINITY_DN4649_c2_g1:4102	si_s876	TRINITY_DN4649_c2_g1	4090	4111	4102	-24.20	-16.80	0.694214876033058	7	1-12,4111-4100;13-18,4098-4093	x-x,4099-4099[BULt];19-21,4092-4090[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	CCAUAUUUUCUAGUUUUAGGAC&GUCUUAGAACUA-AAAAUAAAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN4649_c2_g1_4102_TPlot.pdf
TRINITY_DN4649_c2_g1:4695	si_s256	TRINITY_DN4649_c2_g1	4684	4703	4695	-29.30	-19.40	0.662116040955631	9.5	1-4,4703-4700;6-17,4699-4688	5-5,x-x[BULq];18-21,4687-4684[UP3]	....((((((((((((-((((&)))).))))))))))))....	GCGCUGGGUGGUGUAU-GGGA&UCCCGAUAUAUUACUCAAAAA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s256_TRINITY_DN4649_c2_g1_4695_TPlot.pdf
TRINITY_DN4649_c2_g1:6958	si_s118	TRINITY_DN4649_c2_g1	6947	6967	6958	-26.40	-19.50	0.738636363636364	6.5	4-21,6964-6947	1-3,6967-6965[UP5]	((((((((((((((((((...&...))))))))))))))))))	CAGCUUUUUUAUUUUUCUCGA&AAUAGAAAAAUAGAAGAGUUG	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN4649_c2_g1_6958_TPlot.pdf
TRINITY_DN4649_c2_g1:6959	si_s117	TRINITY_DN4649_c2_g1	6948	6968	6959	-24.70	-16.40	0.663967611336032	8.5	5-21,6964-6948	1-4,6968-6965[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGCUUUUUUAUUUUUCUCGAA&AAAUAGAAAAAUAGAAGAGUU	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN4649_c2_g1_6959_TPlot.pdf
TRINITY_DN4651_c0_g1:9053	si_a57	TRINITY_DN4651_c0_g1	9042	9063	9053	-36.60	-23.90	0.653005464480874	10	1-5,9063-9059;8-18,9055-9045	6-7,9058-9056[AILt];19-21,9044-9042[UP3]	...(((((((((((...(((((&)))))-..)))))))))))...	AGUGGAGAAGCGAGCAAGACUC&GAGUC-GACUCGCUUCUUUCAA	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN4651_c0_g1_9053_TPlot.pdf
TRINITY_DN4651_c0_g1:9526	si_s83	TRINITY_DN4651_c0_g1	9499	9535	9526	-30.90	-22.00	0.711974110032362	35	1-10,9535-9526;11-21,9509-9499	x-x,9525-9510[BULt]	(((((((((((................((((((((((&))))))))))----------------)))))))))))	GAAGAGGAAGAAAGAGCUUUUCAAGCAGAGGAGAGAG&UUCUUUCCUU----------------UCUUCUUCUUC	3	0.999999999998344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4651_c0_g1_9526_TPlot.pdf
TRINITY_DN4651_c1_g1:37	si_s553	TRINITY_DN4651_c1_g1	26	46	37	-23.50	-15.50	0.659574468085106	10.5	6-21,41-26	1-5,46-42[UP5]	((((((((((((((((.....&.....))))))))))))))))	CUGAAAAUAUUAAUUUGGUCA&AAAUAGAAUUAAUAUUUUCGG	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN4651_c1_g1_37_TPlot.pdf
TRINITY_DN4652_c0_g1:821	si_s484	TRINITY_DN4652_c0_g1	810	830	821	-20.50	-14.10	0.68780487804878	8	1-13,830-818	14-21,817-810[UP3]	........(((((((((((((&)))))))))))))........	GUUAUCAGAAAUAAAUAUAGG&CCUAUAUUUAUUUAAAUAUAA	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN4652_c0_g1_821_TPlot.pdf
TRINITY_DN46536_c0_g1:290	si_a318	TRINITY_DN46536_c0_g1	279	299	290	-22.50	-16.10	0.715555555555556	6	1-4,299-296;6-18,294-282	5-5,295-295[SIL];19-21,281-279[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AUUAGAGAAUCAUGGAGAAAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN46536_c0_g1_290_TPlot.pdf
TRINITY_DN4654_c0_g1:2749	si_s124	TRINITY_DN4654_c0_g1	2738	2758	2749	-27.10	-17.80	0.656826568265683	4.5	1-16,2758-2743;18-20,2741-2739	17-17,2742-2742[SIL];21-21,2738-2738[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	GUGGCUUAGCUUUUCUAUUUU&AAAAUAGAAGAGUUGAAUCAA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN4654_c0_g1_2749_TPlot.pdf
TRINITY_DN4654_c0_g1:2754	si_s119	TRINITY_DN4654_c0_g1	2743	2763	2754	-27.40	-18.80	0.686131386861314	5.5	3-21,2761-2743	1-2,2763-2762[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUAGCUUUUCUAUUUUUUUCA&AUAGAAAAAUAGAAGAGUUGA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN4654_c0_g1_2754_TPlot.pdf
TRINITY_DN4654_c0_g1:2755	si_s118	TRINITY_DN4654_c0_g1	2744	2764	2755	-26.40	-17.40	0.659090909090909	7.5	4-21,2761-2744	1-3,2764-2762[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAGCUUUUCUAUUUUUUUCAA&AAUAGAAAAAUAGAAGAGUUG	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s118_TRINITY_DN4654_c0_g1_2755_TPlot.pdf
TRINITY_DN4654_c0_g1:2756	si_s117	TRINITY_DN4654_c0_g1	2745	2765	2756	-24.70	-16.30	0.659919028340081	9	5-21,2761-2745	1-4,2765-2762[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGCUUUUCUAUUUUUUUCAAU&AAAUAGAAAAAUAGAAGAGUU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN4654_c0_g1_2756_TPlot.pdf
TRINITY_DN4654_c0_g1:416	si_a141	TRINITY_DN4654_c0_g1	402	425	416	-23.80	-16.40	0.689075630252101	11	4-14,422-412;15-21,408-402	1-3,425-423[UP5];x-x,411-409[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	UGAAGCAAAAACAGCGGUUAAGCU&UAAUUAAUCGUUGU---UGUUUUA	4	0.999999656177692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN4654_c0_g1_416_TPlot.pdf
TRINITY_DN4654_c0_g1:571	si_a470	TRINITY_DN4654_c0_g1	561	580	571	-21.30	-14.00	0.657276995305164	8	2-10,579-571;13-20,569-562	1-1,580-580[UP5];11-12,570-570[AILq];21-21,561-561[UP3]	.((((((((.-(((((((((.&.)))))))))..)))))))).	GGUGACAAUU-UUACGUAUUU&UAAUAUGUAAUUAUUGUUAUA	3	0.999999694312056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN4654_c0_g1_571_TPlot.pdf
TRINITY_DN4655_c0_g1:2462	si_a323	TRINITY_DN4655_c0_g1	2451	2470	2462	-26.80	-18.90	0.705223880597015	7	1-4,2470-2467;6-7,2466-2465;9-21,2463-2451	5-5,x-x[BULq];8-8,2464-2464[SIL]	(((((((((((((.((-((((&)))).)).)))))))))))))	GGGGAAUGGGAAAUUC-UGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN4655_c0_g1_2462_TPlot.pdf
TRINITY_DN4657_c0_g1:24	si_a395	TRINITY_DN4657_c0_g1	13	32	24	-24.70	-17.20	0.696356275303644	6	3-5,30-28;7-21,27-13	1-2,32-31[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	AUAAAACAGUUCUAU-UUCAA&AAGAAUAUAGAAUUGUUUUGU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN4657_c0_g1_24_TPlot.pdf
TRINITY_DN4657_c0_g1:342	si_a631	TRINITY_DN4657_c0_g1	331	351	342	-25.70	-17.40	0.67704280155642	9	4-8,348-344;10-21,342-331	1-3,351-349[UP5];9-9,343-343[SIL]	((((((((((((.(((((...&...))))).))))))))))))	CUCAGAGAAAUCCACAUGUAU&UAUUAUGUCGAUUUUUUUGAG	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4657_c0_g1_342_TPlot.pdf
TRINITY_DN4657_c0_g1:344	si_a629	TRINITY_DN4657_c0_g1	333	354	344	-26.30	-18.70	0.711026615969582	6	1-5,354-350;6-10,348-344;12-21,342-333	x-x,349-349[BULt];11-11,343-343[SIL]	((((((((((.(((((.(((((&)))))-))))).))))))))))	CAGAGAAAUCCACAUGUAUACG&CGUAU-UAUGUCGAUUUUUUUG	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN4657_c0_g1_344_TPlot.pdf
TRINITY_DN4657_c0_g1:715	si_s899	TRINITY_DN4657_c0_g1	704	724	715	-28.30	-20.70	0.731448763250883	8.5	2-8,723-717;11-21,714-704	1-1,724-724[UP5];9-10,716-715[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	GGUUGGAAUUGUUGAGGAGGA&GCUUUCUCUUCAAUUUCAAUU	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4657_c0_g1_715_TPlot.pdf
TRINITY_DN4657_c0_g1:716	si_s898	TRINITY_DN4657_c0_g1	705	725	716	-30.70	-20.20	0.657980456026059	10	3-9,723-717;12-21,714-705	1-2,725-724[UP5];10-11,716-715[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	GUUGGAAUUGUUGAGGAGGAA&GGCUUUCUCUUCAAUUUCAAU	3	0.999999991331938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4657_c0_g1_716_TPlot.pdf
TRINITY_DN4657_c0_g1:725	si_s83	TRINITY_DN4657_c0_g1	714	734	725	-30.90	-22.30	0.72168284789644	6	1-8,734-727;10-18,725-717;21-21,714-714	9-9,726-726[SIL];19-20,716-715[SIL]	(..(((((((((.((((((((&)))))))).)))))))))..)	GUUGAGGAGGAACGGAAAGGA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999925919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4657_c0_g1_725_TPlot.pdf
TRINITY_DN4657_c0_g1:727	si_s81	TRINITY_DN4657_c0_g1	716	736	727	-28.90	-22.60	0.782006920415225	7	2-10,735-727;12-20,725-717	1-1,736-736[UP5];11-11,726-726[SIL];21-21,716-716[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UGAGGAGGAACGGAAAGGAGC&UUUUCUUUCCUUUCUUCUUCU	2	0.998547150004088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4657_c0_g1_727_TPlot.pdf
TRINITY_DN4657_c0_g1:728	si_s80	TRINITY_DN4657_c0_g1	717	737	728	-28.20	-22.20	0.787234042553192	8	3-11,735-727;13-21,725-717	1-2,737-736[UP5];12-12,726-726[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GAGGAGGAACGGAAAGGAGCG&UUUUUCUUUCCUUUCUUCUUC	2	0.998204808553084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4657_c0_g1_728_TPlot.pdf
TRINITY_DN4657_c0_g1:729	si_s79	TRINITY_DN4657_c0_g1	717	738	729	-26.20	-19.40	0.740458015267176	10.5	4-12,735-727;13-21,725-717	1-3,738-736[UP5];x-x,726-726[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GAGGAGGAACGGAAAGGAGCGG&UUUUUUCUUUCC-UUUCUUCUU	3	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4657_c0_g1_729_TPlot.pdf
TRINITY_DN4657_c0_g1:731	si_s77	TRINITY_DN4657_c0_g1	720	740	731	-25.50	-17.30	0.67843137254902	12.5	6-14,735-727;16-21,725-720	1-5,740-736[UP5];15-15,726-726[SIL]	((((((.(((((((((.....&.....))))))))).))))))	GAGGAACGGAAAGGAGCGGGC&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4657_c0_g1_731_TPlot.pdf
TRINITY_DN4657_c0_g1:756	si_s898	TRINITY_DN4657_c0_g1	745	765	756	-30.70	-23.30	0.758957654723127	6.5	2-17,764-749	1-1,765-765[UP5];18-21,748-745[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGAGAAUUGAAGAGAAGGCG&GGCUUUCUCUUCAAUUUCAAU	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4657_c0_g1_756_TPlot.pdf
TRINITY_DN4657_c0_g1:757	si_s897	TRINITY_DN4657_c0_g1	746	766	757	-31.30	-23.30	0.744408945686901	7.5	3-18,764-749	1-2,766-765[UP5];19-21,748-746[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAGAAUUGAAGAGAAGGCGA&AGGCUUUCUCUUCAAUUUCAA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN4657_c0_g1_757_TPlot.pdf
TRINITY_DN4657_c0_g1:758	si_s896	TRINITY_DN4657_c0_g1	747	767	758	-31.60	-23.30	0.737341772151899	8.5	4-19,764-749	1-3,767-765[UP5];20-21,748-747[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAGAAUUGAAGAGAAGGCGAA&UAGGCUUUCUCUUCAAUUUCA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4657_c0_g1_758_TPlot.pdf
TRINITY_DN4657_c0_g1:759	si_s895	TRINITY_DN4657_c0_g1	748	768	759	-31.10	-23.30	0.7491961414791	9.5	5-20,764-749	1-4,768-765[UP5];21-21,748-748[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAUUGAAGAGAAGGCGAAU&AUAGGCUUUCUCUUCAAUUUC	0	0.0290861376380449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4657_c0_g1_759_TPlot.pdf
TRINITY_DN4657_c0_g1:760	si_s894	TRINITY_DN4657_c0_g1	749	769	760	-29.10	-23.10	0.793814432989691	10.5	6-21,764-749	1-5,769-765[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAUUGAAGAGAAGGCGAAUG&AAUAGGCUUUCUCUUCAAUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4657_c0_g1_760_TPlot.pdf
TRINITY_DN4657_c0_g1:761	si_s893	TRINITY_DN4657_c0_g1	750	770	761	-29.10	-22.00	0.756013745704467	12	7-21,764-750	1-6,770-765[UP5]	(((((((((((((((......&......)))))))))))))))	AAUUGAAGAGAAGGCGAAUGA&AAAUAGGCUUUCUCUUCAAUU	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4657_c0_g1_761_TPlot.pdf
TRINITY_DN4657_c0_g1:762	si_s892	TRINITY_DN4657_c0_g1	751	771	762	-29.50	-21.10	0.715254237288136	14	8-21,764-751	1-7,771-765[UP5]	((((((((((((((.......&.......))))))))))))))	AUUGAAGAGAAGGCGAAUGAC&UAAAUAGGCUUUCUCUUCAAU	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4657_c0_g1_762_TPlot.pdf
TRINITY_DN4657_c0_g1:763	si_s891	TRINITY_DN4657_c0_g1	752	772	763	-29.60	-19.90	0.672297297297297	16	9-21,764-752	1-8,772-765[UP5]	(((((((((((((........&........)))))))))))))	UUGAAGAGAAGGCGAAUGACG&AUAAAUAGGCUUUCUCUUCAA	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4657_c0_g1_763_TPlot.pdf
TRINITY_DN4657_c0_g1:876	si_a412	TRINITY_DN4657_c0_g1	865	885	876	-18.30	-12.40	0.677595628415301	8.5	1-2,885-884;4-17,882-869	3-3,883-883[SIL];18-21,868-865[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUGAUGUUUAAGUAUAAAGGA&UUGUUUAUAUUUAAAUAAAUA	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN4657_c0_g1_876_TPlot.pdf
TRINITY_DN4657_c0_g1:877	si_a411	TRINITY_DN4657_c0_g1	866	886	877	-17.90	-12.60	0.70391061452514	8.5	2-3,885-884;5-18,882-869	1-1,886-886[UP5];4-4,883-883[SIL];19-21,868-866[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	UGAUGUUUAAGUAUAAAGGAG&UUUGUUUAUAUUUAAAUAAAU	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4657_c0_g1_877_TPlot.pdf
TRINITY_DN4657_c0_g1:879	si_a409	TRINITY_DN4657_c0_g1	868	888	879	-19.50	-17.60	0.902564102564103	6	1-5,888-884;7-20,882-869	6-6,883-883[SIL];21-21,868-868[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	AUGUUUAAGUAUAAAGGAGAC&GUUUUGUUUAUAUUUAAAUAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4657_c0_g1_879_TPlot.pdf
TRINITY_DN4657_c0_g1:880	si_a408	TRINITY_DN4657_c0_g1	869	889	880	-20.10	-17.50	0.870646766169154	6	2-6,888-884;8-21,882-869	1-1,889-889[UP5];7-7,883-883[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UGUUUAAGUAUAAAGGAGACG&UGUUUUGUUUAUAUUUAAAUA	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4657_c0_g1_880_TPlot.pdf
TRINITY_DN4657_c0_g1:883	si_a405	TRINITY_DN4657_c0_g1	872	892	883	-19.80	-17.10	0.863636363636364	6.5	2-9,891-884;11-21,882-872	1-1,892-892[UP5];10-10,883-883[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	UUAAGUAUAAAGGAGACGAUA&AAUUGUUUUGUUUAUAUUUAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4657_c0_g1_883_TPlot.pdf
TRINITY_DN4657_c0_g1:884	si_a404	TRINITY_DN4657_c0_g1	873	893	884	-21.70	-16.20	0.746543778801843	8.5	3-10,891-884;12-21,882-873	1-2,893-892[UP5];11-11,883-883[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UAAGUAUAAAGGAGACGAUAC&GAAUUGUUUUGUUUAUAUUUA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4657_c0_g1_884_TPlot.pdf
TRINITY_DN4657_c0_g1:885	si_a403	TRINITY_DN4657_c0_g1	874	894	885	-22.00	-14.70	0.668181818181818	10.5	4-11,891-884;13-21,882-874	1-3,894-892[UP5];12-12,883-883[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAGUAUAAAGGAGACGAUACA&AGAAUUGUUUUGUUUAUAUUU	2	0.999999966957459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN4657_c0_g1_885_TPlot.pdf
TRINITY_DN4657_c0_g1:903	si_a634	TRINITY_DN4657_c0_g1	890	912	903	-26.40	-17.20	0.651515151515151	6.5	1-10,912-903;12-17,900-895;18-20,893-891	11-11,902-901[AILt];x-x,894-894[BULt];21-21,890-890[UP3]	.(((.((((((..((((((((((&))))))))))-.))))))-))).	AUACAUCAAAACCAAUCGACAUG&UAUGUCGAUU-UUUUUGA-GUAA	3	0.999999999998727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4657_c0_g1_903_TPlot.pdf
TRINITY_DN4657_c0_g1:905	si_a632	TRINITY_DN4657_c0_g1	892	914	905	-26.10	-17.70	0.67816091954023	6	1-12,914-903;14-19,900-895;20-21,893-892	13-13,902-901[AILt];x-x,894-894[BULt]	((.((((((..((((((((((((&))))))))))))-.))))))-))	ACAUCAAAACCAAUCGACAUGGU&AUUAUGUCGAUU-UUUUUGA-GU	4	0.999997970858953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4657_c0_g1_905_TPlot.pdf
TRINITY_DN4657_c0_g1:906	si_a631	TRINITY_DN4657_c0_g1	894	915	906	-25.70	-18.30	0.712062256809339	5.5	1-13,915-903;15-20,900-895	14-14,902-901[AILt];21-21,894-894[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	AUCAAAACCAAUCGACAUGGUG&UAUUAUGUCGAUU-UUUUUGAG	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN4657_c0_g1_906_TPlot.pdf
TRINITY_DN4657_c0_g2:1178	si_a628	TRINITY_DN4657_c0_g2	1166	1187	1178	-27.10	-18.40	0.678966789667897	8	1-9,1187-1179;11-12,1177-1176;14-21,1173-1166	10-10,1178-1178[SIL];13-13,1175-1174[AILt]	((((((((..((.(((((((((&))))))))).))-.))))))))	GAAAAGAUGGGAGAUGGUACGC&GCGUAUUAUGUC-GAUUUUUUU	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN4657_c0_g2_1178_TPlot.pdf
TRINITY_DN4657_c0_g2:726	si_s890	TRINITY_DN4657_c0_g2	715	735	726	-29.50	-19.60	0.664406779661017	17.5	9-21,727-715	1-8,735-728[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGGAGGCUAGUGACGU&AAUAAAUAGGCUUUCUCUUCA	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4657_c0_g2_726_TPlot.pdf
TRINITY_DN4657_c0_g2:841	si_a409	TRINITY_DN4657_c0_g2	830	850	841	-19.50	-13.40	0.687179487179487	6.5	1-5,850-846;7-15,844-836;17-20,834-831	6-6,845-845[SIL];16-16,835-835[SIL];21-21,830-830[UP3]	.((((.(((((((((.(((((&))))).))))))))).)))).	AUGUUCAAAUAUAAAGGAAGC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN4657_c0_g2_841_TPlot.pdf
TRINITY_DN465_c0_g1:4813	si_s312	TRINITY_DN465_c0_g1	4801	4822	4813	-29.00	-20.10	0.693103448275862	13	6-10,4817-4813;11-20,4811-4802	1-5,4822-4818[UP5];x-x,4812-4812[BULt];21-21,4801-4801[UP3]	.((((((((((.(((((.....&.....)))))-)))))))))).	GAACAAGAAGGAACAGGCUUGA&AAAAUUCUGU-CCUUCUUGUUA	4	0.999989198946718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN465_c0_g1_4813_TPlot.pdf
TRINITY_DN4660_c0_g1:472	si_s548	TRINITY_DN4660_c0_g1	461	481	472	-22.50	-16.10	0.715555555555556	8	1-13,481-469	14-21,468-461[UP3]	........(((((((((((((&)))))))))))))........	UUGUGCUUUUCUAUUUUGAUC&GAUCAAAAUAGAAUUAAUAUU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN4660_c0_g1_472_TPlot.pdf
TRINITY_DN4664_c1_g1:188	si_a356	TRINITY_DN4664_c1_g1	177	197	188	-26.90	-17.70	0.657992565055762	14.5	7-19,191-179	1-6,197-192[UP5];20-21,178-177[UP3]	..(((((((((((((......&......)))))))))))))..	CGCCGGUCAAAAUGGCGUCUG&UUAAUUCUAUUUUGAUCGGAU	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN4664_c1_g1_188_TPlot.pdf
TRINITY_DN4664_c1_g1:448	si_s71	TRINITY_DN4664_c1_g1	435	458	448	-25.70	-17.80	0.692607003891051	6.5	1-5,458-454;6-15,452-443;16-21,440-435	x-x,453-453[BULt];x-x,442-441[BULt]	((((((..((((((((((.(((((&)))))-))))))))))--))))))	AGGAAGUCGAAGAAGAAUCAGAAG&CUUCU-AUUUUUUUUC--UUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4664_c1_g1_448_TPlot.pdf
TRINITY_DN4664_c1_g1:449	si_s70	TRINITY_DN4664_c1_g1	436	459	449	-25.80	-18.30	0.709302325581395	6	1-6,459-454;7-16,452-443;17-21,440-436	x-x,453-453[BULt];x-x,442-441[BULt]	(((((..((((((((((.((((((&))))))-))))))))))--)))))	GGAAGUCGAAGAAGAAUCAGAAGU&ACUUCU-AUUUUUUUUC--UUUCC	2	0.99999829174949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4664_c1_g1_449_TPlot.pdf
TRINITY_DN4665_c1_g1:1172	si_a787	TRINITY_DN4665_c1_g1	1160	1183	1172	-26.30	-19.20	0.730038022813688	8	1-7,1183-1177;8-15,1174-1167;16-21,1165-1160	x-x,1176-1175[BULt];x-x,1166-1166[BULt]	((((((.((((((((..(((((((&)))))))--))))))))-))))))	UGGAGAUAUGGAAGAAAAUGGAAG&CUUCUAU--UUUUCUAU-UUUCCA	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4665_c1_g1_1172_TPlot.pdf
TRINITY_DN4665_c1_g1:1373	si_s63	TRINITY_DN4665_c1_g1	1357	1382	1373	-25.80	-17.50	0.678294573643411	16.5	1-6,1382-1377;9-11,1374-1372;12-21,1366-1357	7-8,1376-1375[SIL];x-x,1371-1367[BULt]	((((((((((.....(((..((((((&))))))..)))-----))))))))))	GAAGAAGUAGCCAAAAAGGGGCUAGC&GUUAGCAACUU-----CUAUUUUUUU	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN4665_c1_g1_1373_TPlot.pdf
TRINITY_DN4666_c1_g1:255	si_a124	TRINITY_DN4666_c1_g1	244	264	255	-25.10	-20.70	0.824701195219123	7.5	1-18,264-247	19-21,246-244[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAGGCUGUUGUUAUGGAACAG&UUGUUUUAUAGCAAUAGUAAU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN4666_c1_g1_255_TPlot.pdf
TRINITY_DN4667_c0_g1:1166	si_a465	TRINITY_DN4667_c0_g1	1155	1175	1166	-20.90	-13.60	0.650717703349282	10	1-14,1175-1162	15-21,1161-1155[UP3]	.......((((((((((((((&)))))))))))))).......	UGAUUUCUACAUGUUGUAUGU&AUAUAUAAUAUGUAAUUAUUG	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN4667_c0_g1_1166_TPlot.pdf
TRINITY_DN4667_c0_g1:507	si_a22	TRINITY_DN4667_c0_g1	495	516	507	-23.50	-15.30	0.651063829787234	8	1-3,516-514;5-15,512-502;16-20,500-496	4-4,513-513[SIL];x-x,501-501[BULt];21-21,495-495[UP3]	.(((((.(((((((((((.(((&))).)))))))))))-))))).	AUUGGAUGCUGGAAAUGAUUAG&CUAUUUAUUUUUAGU-UCUAAG	3	0.999999811949203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN4667_c0_g1_507_TPlot.pdf
TRINITY_DN4667_c0_g2:1749	si_a22	TRINITY_DN4667_c0_g2	1737	1758	1749	-23.50	-15.30	0.651063829787234	8	1-3,1758-1756;5-15,1754-1744;16-20,1742-1738	4-4,1755-1755[SIL];x-x,1743-1743[BULt];21-21,1737-1737[UP3]	.(((((.(((((((((((.(((&))).)))))))))))-))))).	AUUGGAUGCUGGAAAUGAUUAG&CUAUUUAUUUUUAGU-UCUAAG	4	0.999999602727879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN4667_c0_g2_1749_TPlot.pdf
TRINITY_DN4667_c0_g2:2165	si_a313	TRINITY_DN4667_c0_g2	2153	2174	2165	-28.70	-21.00	0.731707317073171	7	1-3,2174-2172;5-14,2170-2161;15-20,2159-2154	4-4,2171-2171[SIL];x-x,2160-2160[BULt];21-21,2153-2153[UP3]	.((((((.((((((((((.(((&))).))))))))))-)))))).	CAAAUCAGUGGAUAGGUCGAGG&CUUGGAUUUAUCCA-UGAUUUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN4667_c0_g2_2165_TPlot.pdf
TRINITY_DN4669_c0_g1:1177	si_a887	TRINITY_DN4669_c0_g1	1166	1185	1177	-22.90	-15.70	0.685589519650655	5	1-4,1185-1182;6-19,1181-1168	5-5,x-x[BULq];20-21,1167-1166[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	AAAUUAUUACUAUGUU-AUUG&CAAUCAAUAUAGUAAUAAUAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN4669_c0_g1_1177_TPlot.pdf
TRINITY_DN466_c2_g1:1393	si_a766	TRINITY_DN466_c2_g1	1382	1402	1393	-30.50	-19.90	0.652459016393443	7.5	1-16,1402-1387	17-21,1386-1382[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCCCAAAUUAAUCAAAGGCCC&GGGUUUUUGAUUGAUUCAACU	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN466_c2_g1_1393_TPlot.pdf
TRINITY_DN466_c4_g2:1282	si_s821	TRINITY_DN466_c4_g2	1271	1291	1282	-22.20	-15.46	0.696396396396396	9	1-6,1291-1286;11-21,1281-1271	7-10,1285-1282[SIL]	(((((((((((....((((((&))))))....)))))))))))	UUGUUUUUCAUCUAGGAGAAA&UUUCUUAAUAAUGAAAAACAA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN466_c4_g2_1282_TPlot.pdf
TRINITY_DN4670_c0_g1:922	si_s706	TRINITY_DN4670_c0_g1	912	931	922	-29.40	-20.10	0.683673469387755	9	1-10,931-922;13-18,920-915	11-12,921-921[AILq];19-21,914-912[UP3]	...((((((.-((((((((((&))))))))))..))))))...	UUGCCCUGUA-GCUAAUAGAU&AUUUAUUAGUGAACAGGGAAA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN4670_c0_g1_922_TPlot.pdf
TRINITY_DN4671_c0_g1:1465	si_a145	TRINITY_DN4671_c0_g1	1446	1474	1465	-28.10	-18.50	0.658362989323843	16.5	4-13,1471-1462;14-21,1453-1446	1-3,1474-1472[UP5];x-x,1461-1454[BULt]	((((((((........((((((((((...&...))))))))))--------))))))))	GCCUUGGAAAAUGGCUACAGCGACGACAU&UAAUCGUUGUUGU--------UUUAAGGU	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN4671_c0_g1_1465_TPlot.pdf
TRINITY_DN4671_c0_g1:1812	si_a424	TRINITY_DN4671_c0_g1	1801	1821	1812	-28.40	-18.80	0.661971830985915	4	1-19,1821-1803	20-21,1802-1801[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACAUGGAUUUUAUAUUUAUUU&AAAUAAAUAUAGGAUCCGUUG	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN4671_c0_g1_1812_TPlot.pdf
TRINITY_DN4671_c0_g1:823	si_s437	TRINITY_DN4671_c0_g1	812	831	823	-19.70	-13.10	0.66497461928934	6	2-8,830-824;10-19,823-814	1-1,831-831[UP5];9-9,x-x[BULq];20-21,813-812[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	GCAUAUGUGAUA-GUAAUUAA&AUAAUUACAUAUUAUAUAUAA	4	0.99998465846649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN4671_c0_g1_823_TPlot.pdf
TRINITY_DN4671_c0_g1:824	si_s436	TRINITY_DN4671_c0_g1	813	832	824	-19.60	-13.10	0.668367346938775	7	3-9,830-824;11-20,823-814	1-2,832-831[UP5];10-10,x-x[BULq];21-21,813-813[UP3]	.((((((((((-(((((((..&..))))))).)))))))))).	CAUAUGUGAUA-GUAAUUAAU&AAUAAUUACAUAUUAUAUAUA	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN4671_c0_g1_824_TPlot.pdf
TRINITY_DN4673_c0_g1:175	si_a32	TRINITY_DN4673_c0_g1	164	182	175	-35.90	-24.40	0.67966573816156	10	4-7,179-176;10-21,175-164	1-3,182-180[UP5];8-9,x-x[BULq]	((((((((((((--((((...&...))))..))))))))))))	GCCUACUGGUCU--GAACGAG&UUAGUUCUAAGACCGGUAGGU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN4673_c0_g1_175_TPlot.pdf
TRINITY_DN46744_c0_g1:37	si_s147	TRINITY_DN46744_c0_g1	27	45	37	-33.10	-21.60	0.652567975830816	8	2-9,44-37;12-19,36-29	1-1,45-45[UP5];10-11,x-x[BULq];20-21,28-27[UP3]	..((((((((--((((((((.&.))))))))..))))))))..	AGGGAUCUCC--UGGGUUUUA&AAAAACCCAAAGGAGGUUCAU	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN46744_c0_g1_37_TPlot.pdf
TRINITY_DN4674_c0_g1:1782	si_s423	TRINITY_DN4674_c0_g1	1771	1791	1782	-21.50	-14.60	0.67906976744186	8.5	4-10,1788-1782;12-21,1780-1771	1-3,1791-1789[UP5];11-11,1781-1781[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UGAUUAUUGUGAUAUAGGUUU&UAUUCUAUAUAACAAUAAUUA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN4674_c0_g1_1782_TPlot.pdf
TRINITY_DN4675_c0_g1:2772	si_a114	TRINITY_DN4675_c0_g1	2761	2781	2772	-27.90	-18.30	0.655913978494624	10	2-7,2780-2775;9-17,2773-2765	1-1,2781-2781[UP5];8-8,2774-2774[SIL];18-21,2764-2761[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	ACAGAGAGCGAGCGCGUGUUG&AAAUACGAGCUUGUUUUAUAG	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN4675_c0_g1_2772_TPlot.pdf
TRINITY_DN4675_c0_g1:2774	si_a112	TRINITY_DN4675_c0_g1	2763	2783	2774	-26.20	-18.30	0.698473282442748	11.5	4-9,2780-2775;11-19,2773-2765	1-3,2783-2781[UP5];10-10,2774-2774[SIL];20-21,2764-2763[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	AGAGAGCGAGCGCGUGUUGGA&UAAAAUACGAGCUUGUUUUAU	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN4675_c0_g1_2774_TPlot.pdf
TRINITY_DN4676_c0_g1:2637	si_a122	TRINITY_DN4676_c0_g1	2626	2646	2637	-29.00	-20.40	0.703448275862069	6.5	1-7,2646-2640;9-16,2638-2631;18-21,2629-2626	8-8,2639-2639[SIL];17-17,2630-2630[SIL]	((((.((((((((.(((((((&))))))).)))))))).))))	UAUUUUUGCUGUGCAGCAAGC&GCUUGUUUUAUAGCAAUAGUA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN4676_c0_g1_2637_TPlot.pdf
TRINITY_DN4676_c0_g1:2885	si_s559	TRINITY_DN4676_c0_g1	2874	2894	2885	-27.80	-18.20	0.654676258992806	8.5	2-17,2893-2878	1-1,2894-2894[UP5];18-21,2877-2874[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAGUUCCUGAAAAUGUUGGUA&AAUUAAUAUUUUCGGGACAAG	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN4676_c0_g1_2885_TPlot.pdf
TRINITY_DN4679_c0_g1:1076	si_a783	TRINITY_DN4679_c0_g1	1065	1084	1076	-24.70	-16.30	0.659919028340081	7	2-9,1083-1076;11-18,1075-1068	1-1,1084-1084[UP5];10-10,x-x[BULq];19-21,1067-1065[UP3]	...((((((((-((((((((.&.)))))))).))))))))...	UGCUGGGAAAA-AGAAGAGUC&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4679_c0_g1_1076_TPlot.pdf
TRINITY_DN4679_c0_g1:1860	si_a124	TRINITY_DN4679_c0_g1	1849	1869	1860	-25.10	-16.40	0.653386454183267	9.5	1-9,1869-1861;12-18,1858-1852	10-11,1860-1859[SIL];19-21,1851-1849[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	GAAGCUAUUGAAAUAGAGCAA&UUGUUUUAUAGCAAUAGUAAU	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN4679_c0_g1_1860_TPlot.pdf
TRINITY_DN4679_c0_g1:1861	si_a123	TRINITY_DN4679_c0_g1	1850	1870	1861	-26.60	-19.30	0.725563909774436	8.5	1-10,1870-1861;13-19,1858-1852	11-12,1860-1859[SIL];20-21,1851-1850[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	AAGCUAUUGAAAUAGAGCAAG&CUUGUUUUAUAGCAAUAGUAA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN4679_c0_g1_1861_TPlot.pdf
TRINITY_DN4679_c0_g1:1949	si_s500	TRINITY_DN4679_c0_g1	1938	1961	1949	-22.80	-15.10	0.662280701754386	8.5	1-8,1961-1954;9-14,1950-1945;16-20,1943-1939	x-x,1953-1951[BULt];15-15,1944-1944[SIL];21-21,1938-1938[UP3]	.(((((.((((((...((((((((&))))))))---)))))).))))).	CGUAGAUUUGUUUUUAUGUUUAUA&UAUAAACA---AAACAAUUCUAUA	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN4679_c0_g1_1949_TPlot.pdf
TRINITY_DN4679_c0_g1:1950	si_s499	TRINITY_DN4679_c0_g1	1939	1962	1950	-22.60	-14.90	0.65929203539823	8.5	2-9,1961-1954;10-15,1950-1945;17-21,1943-1939	1-1,1962-1962[UP5];x-x,1953-1951[BULt];16-16,1944-1944[SIL]	(((((.((((((...((((((((.&.))))))))---)))))).)))))	GUAGAUUUGUUUUUAUGUUUAUAG&AUAUAAACA---AAACAAUUCUAU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN4679_c0_g1_1950_TPlot.pdf
TRINITY_DN4679_c0_g1:196	si_a453	TRINITY_DN4679_c0_g1	185	205	196	-21.10	-14.10	0.66824644549763	10	1-14,205-192	15-21,191-185[UP3]	.......((((((((((((((&)))))))))))))).......	ACAACCCAUGACGACAGUUAU&AUAAUUGUUGUUAUAUAUAAU	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN4679_c0_g1_196_TPlot.pdf
TRINITY_DN4679_c0_g1:200	si_a449	TRINITY_DN4679_c0_g1	189	209	200	-25.70	-18.00	0.700389105058366	10	4-18,206-192	1-3,209-207[UP5];19-21,191-189[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCCAUGACGACAGUUAUCAAA&UGAGAUAAUUGUUGUUAUAUA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN4679_c0_g1_200_TPlot.pdf
TRINITY_DN4679_c0_g1:202	si_a447	TRINITY_DN4679_c0_g1	191	211	202	-25.70	-18.00	0.700389105058366	12	6-20,206-192	1-5,211-207[UP5];21-21,191-191[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAUGACGACAGUUAUCAAAUU&UAUGAGAUAAUUGUUGUUAUA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN4679_c0_g1_202_TPlot.pdf
TRINITY_DN4679_c0_g1:203	si_a446	TRINITY_DN4679_c0_g1	192	212	203	-25.50	-17.80	0.698039215686275	13	7-21,206-192	1-6,212-207[UP5]	(((((((((((((((......&......)))))))))))))))	AUGACGACAGUUAUCAAAUUG&AUAUGAGAUAAUUGUUGUUAU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN4679_c0_g1_203_TPlot.pdf
TRINITY_DN4679_c1_g1:525	si_s476	TRINITY_DN4679_c1_g1	514	534	525	-28.40	-19.30	0.679577464788732	9	1-13,534-522	14-21,521-514[UP3]	........(((((((((((((&)))))))))))))........	AAAUUUAAAUAGGAUCUGUUG&CAACGGAUCCUAUAUUUAUUU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN4679_c1_g1_525_TPlot.pdf
TRINITY_DN4680_c0_g1:193	si_s77	TRINITY_DN4680_c0_g1	181	202	193	-25.50	-18.80	0.737254901960784	7.5	2-11,201-192;12-20,190-182	1-1,202-202[UP5];x-x,191-191[BULt];21-21,181-181[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AGAGAAAGGGCGAGAAAAAGAC&UUUUUUUUCUU-UCCUUUCUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4680_c0_g1_193_TPlot.pdf
TRINITY_DN4680_c0_g1:196	si_s74	TRINITY_DN4680_c0_g1	184	205	196	-25.00	-16.60	0.664	7	1-2,205-204;5-14,201-192;15-21,190-184	3-4,203-202[SIL];x-x,191-191[BULt]	(((((((.((((((((((..((&))..))))))))))-)))))))	GAAAGGGCGAGAAAAAGACAAG&CUAUUUUUUUUCUU-UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4680_c0_g1_196_TPlot.pdf
TRINITY_DN4684_c0_g1:39	si_a764	TRINITY_DN4684_c0_g1	28	47	39	-28.90	-18.92	0.654671280276817	11.5	2-6,46-42;11-21,38-28	1-1,47-47[UP5];7-10,41-39[AILq]	(((((((((((...-(((((.&.)))))....)))))))))))	UUGAAUCGAUCUUU-GCCUAU&UUGGGUUUUUGAUUGAUUCAA	4	0.99999999855241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN4684_c0_g1_39_TPlot.pdf
TRINITY_DN4685_c0_g1:406	si_a641	TRINITY_DN4685_c0_g1	395	415	406	-23.60	-15.90	0.673728813559322	7.5	1-5,415-411;8-12,408-404;15-21,401-395	6-7,410-409[SIL];13-14,403-402[SIL]	(((((((..(((((..(((((&)))))..)))))..)))))))	CGAUGUAGGACUUAUUAAAAU&AUUUUUUUGAGUAAUAUAUCG	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN4685_c0_g1_406_TPlot.pdf
TRINITY_DN4685_c0_g1:583	si_s39	TRINITY_DN4685_c0_g1	572	592	583	-22.30	-14.90	0.668161434977579	9.5	3-16,590-577	1-2,592-591[UP5];17-21,576-572[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAAUACGAUUAUUGAAGAUGA&AAAUCUUUAAUAAUUGGAUUU	3	0.999975772617513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN4685_c0_g1_583_TPlot.pdf
TRINITY_DN4685_c0_g1:584	si_s38	TRINITY_DN4685_c0_g1	573	593	584	-22.70	-14.90	0.656387665198238	10.5	4-17,590-577	1-3,593-591[UP5];18-21,576-573[UP3]	....((((((((((((((...&...))))))))))))))....	AAUACGAUUAUUGAAGAUGAA&UAAAUCUUUAAUAAUUGGAUU	4	0.999974296613986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN4685_c0_g1_584_TPlot.pdf
TRINITY_DN4686_c2_g1:685	si_a516	TRINITY_DN4686_c2_g1	672	694	685	-38.50	-26.80	0.696103896103896	7	1-11,694-684;12-21,681-672	x-x,683-682[BULt]	((((((((((..(((((((((((&)))))))))))--))))))))))	CGUGUCUGCCAUUUACAUUUUAG&UUGGAAUGUAA--GGCGGACACG	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a516_TRINITY_DN4686_c2_g1_685_TPlot.pdf
TRINITY_DN4687_c0_g1:783	si_a68	TRINITY_DN4687_c0_g1	771	792	783	-25.40	-17.40	0.68503937007874	5	1-6,792-787;8-19,785-774;20-20,772-772	7-7,786-786[SIL];x-x,773-773[BULt];21-21,771-771[UP3]	.(.((((((((((((.((((((&)))))).))))))))))))-).	CGCAAAAACAAUUUGUAGGAAG&CUUCUUUCAAAUUGUUUUU-CA	3	0.999999949556134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4687_c0_g1_783_TPlot.pdf
TRINITY_DN4687_c0_g1:784	si_a67	TRINITY_DN4687_c0_g1	773	793	784	-27.20	-19.20	0.705882352941177	4.5	1-7,793-787;9-20,785-774	8-8,786-786[SIL];21-21,773-773[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	CAAAAACAAUUUGUAGGAAGU&GCUUCUUUCAAAUUGUUUUUC	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN4687_c0_g1_784_TPlot.pdf
TRINITY_DN4687_c0_g1:785	si_a66	TRINITY_DN4687_c0_g1	774	794	785	-26.70	-19.30	0.722846441947566	5	2-8,793-787;10-21,785-774	1-1,794-794[UP5];9-9,786-786[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	AAAAACAAUUUGUAGGAAGUU&CGCUUCUUUCAAAUUGUUUUU	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4687_c0_g1_785_TPlot.pdf
TRINITY_DN4687_c0_g1:825	si_a401	TRINITY_DN4687_c0_g1	814	837	825	-22.60	-15.90	0.70353982300885	9.5	1-8,837-830;9-19,826-816	x-x,829-827[BULt];20-21,815-814[UP3]	..(((((((((((...((((((((&))))))))---)))))))))))..	CAAUAAACGAAACUUAAAUUCUGU&AUAGAAUU---GUUUUGUUUAUAU	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN4687_c0_g1_825_TPlot.pdf
TRINITY_DN4687_c0_g1:826	si_a400	TRINITY_DN4687_c0_g1	815	838	826	-22.80	-17.00	0.745614035087719	8.5	1-9,838-830;10-20,826-816	x-x,829-827[BULt];21-21,815-815[UP3]	.(((((((((((...(((((((((&)))))))))---))))))))))).	AAUAAACGAAACUUAAAUUCUGUA&UAUAGAAUU---GUUUUGUUUAUA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN4687_c0_g1_826_TPlot.pdf
TRINITY_DN4687_c0_g1:830	si_a399	TRINITY_DN4687_c0_g1	816	839	830	-22.60	-17.70	0.783185840707964	7.5	1-10,839-830;11-21,826-816	x-x,829-827[BULt]	(((((((((((...((((((((((&))))))))))---)))))))))))	AUAAACGAAACUUAAAUUCUGUAU&AUAUAGAAUU---GUUUUGUUUAU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN4687_c0_g1_830_TPlot.pdf
TRINITY_DN4687_c0_g1:831	si_a398	TRINITY_DN4687_c0_g1	817	840	831	-22.40	-17.40	0.776785714285714	7.5	1-11,840-830;12-21,826-817	x-x,829-827[BULt]	((((((((((...(((((((((((&)))))))))))---))))))))))	UAAACGAAACUUAAAUUCUGUAUU&AAUAUAGAAUU---GUUUUGUUUA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4687_c0_g1_831_TPlot.pdf
TRINITY_DN4687_c0_g1:833	si_a396	TRINITY_DN4687_c0_g1	819	842	833	-24.70	-19.20	0.777327935222672	5.5	2-13,841-830;14-21,826-819	1-1,842-842[UP5];x-x,829-827[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	AACGAAACUUAAAUUCUGUAUUCA&AGAAUAUAGAAUU---GUUUUGUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN4687_c0_g1_833_TPlot.pdf
TRINITY_DN4687_c0_g1:834	si_a395	TRINITY_DN4687_c0_g1	820	843	834	-24.70	-18.30	0.740890688259109	7.5	3-14,841-830;15-21,826-820	1-2,843-842[UP5];x-x,829-827[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	ACGAAACUUAAAUUCUGUAUUCAU&AAGAAUAUAGAAUU---GUUUUGU	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN4687_c0_g1_834_TPlot.pdf
TRINITY_DN4687_c0_g1:835	si_a394	TRINITY_DN4687_c0_g1	821	844	835	-24.30	-17.00	0.699588477366255	9.5	4-15,841-830;16-21,826-821	1-3,844-842[UP5];x-x,829-827[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	CGAAACUUAAAUUCUGUAUUCAUG&UAAGAAUAUAGAAUU---GUUUUG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN4687_c0_g1_835_TPlot.pdf
TRINITY_DN4688_c0_g1:3186	si_a642	TRINITY_DN4688_c0_g1	3176	3194	3186	-25.90	-16.90	0.652509652509653	5.5	2-8,3193-3187;10-14,3186-3182;16-21,3181-3176	1-1,3194-3194[UP5];9-9,x-x[BULq];15-15,x-x[BULq]	((((((-(((((-(((((((.&.))))))).))))).))))))	CCGAUG-AUUAC-CAAAAGAG&UUUUUUUGAGUAAUAUAUCGG	2	0.997190032184006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN4688_c0_g1_3186_TPlot.pdf
TRINITY_DN4688_c0_g1:4455	si_a461	TRINITY_DN4688_c0_g1	4444	4463	4455	-21.50	-15.30	0.711627906976744	5	1-3,4463-4461;5-18,4460-4447	4-4,x-x[BULq];19-21,4446-4444[UP3]	...((((((((((((((-(((&))).))))))))))))))...	AUAUACAUAUUAUAUAU-ACA&UGUUAUAUAUAAUAUGUAAUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN4688_c0_g1_4455_TPlot.pdf
TRINITY_DN4688_c0_g1:4457	si_a459	TRINITY_DN4688_c0_g1	4446	4465	4457	-23.20	-15.50	0.668103448275862	6	3-5,4463-4461;7-20,4460-4447	1-2,4465-4464[UP5];6-6,x-x[BULq];21-21,4446-4446[UP3]	.((((((((((((((-(((..&..))).)))))))))))))).	AUACAUAUUAUAUAU-ACAUU&GUUGUUAUAUAUAAUAUGUAA	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN4688_c0_g1_4457_TPlot.pdf
TRINITY_DN4688_c0_g1:726	si_s474	TRINITY_DN4688_c0_g1	715	735	726	-31.80	-21.50	0.676100628930818	9	1-13,735-723	14-21,722-715[UP3]	........(((((((((((((&)))))))))))))........	CAGGCUUCAGGAUUCGUUGGA&UCCAACGGAUCCUAUAUUUAU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN4688_c0_g1_726_TPlot.pdf
TRINITY_DN468_c0_g1:307	si_s76	TRINITY_DN468_c0_g1	292	316	307	-23.60	-15.66	0.663559322033898	11.5	2-15,315-302;18-21,295-292	1-1,316-316[UP5];16-17,301-296[AILt]	((((......((((((((((((((.&.))))))))))))))----..))))	AGGAUAUCCUGGAGAGAAAGGAGAA&AUUUUUUUUCUUUCC----UUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN468_c0_g1_307_TPlot.pdf
TRINITY_DN468_c0_g1:308	si_s75	TRINITY_DN468_c0_g1	297	317	308	-24.00	-15.60	0.65	11.5	3-16,315-302	1-2,317-316[UP5];17-21,301-297[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUCCUGGAGAGAAAGGAGAAU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN468_c0_g1_308_TPlot.pdf
TRINITY_DN468_c0_g1:310	si_s73	TRINITY_DN468_c0_g1	299	322	310	-24.00	-15.80	0.658333333333333	14	1-4,322-319;5-18,315-302	x-x,318-316[BULt];19-21,301-299[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	CCUGGAGAGAAAGGAGAAUCUGGG&UCUA---UUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN468_c0_g1_310_TPlot.pdf
TRINITY_DN468_c0_g1:311	si_s72	TRINITY_DN468_c0_g1	300	323	311	-24.10	-16.20	0.672199170124481	14.5	2-5,322-319;6-19,315-302	1-1,323-323[UP5];x-x,318-316[BULt];20-21,301-300[UP3]	..((((((((((((((...((((.&.))))---))))))))))))))..	CUGGAGAGAAAGGAGAAUCUGGGG&UUCUA---UUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN468_c0_g1_311_TPlot.pdf
TRINITY_DN468_c0_g1:312	si_s71	TRINITY_DN468_c0_g1	301	323	312	-25.70	-17.08	0.664591439688716	14.5	1-4,323-320;7-20,315-302	5-6,319-316[AILt];21-21,301-301[UP3]	.((((((((((((((....((((&))))--..)))))))))))))).	UGGAGAGAAAGGAGAAUCUGGGG&CUUC--UAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN468_c0_g1_312_TPlot.pdf
TRINITY_DN4690_c0_g1:1454	si_s77	TRINITY_DN4690_c0_g1	1442	1463	1454	-25.50	-17.10	0.670588235294118	8.5	1-5,1463-1459;7-10,1457-1454;11-20,1452-1443	6-6,1458-1458[SIL];x-x,1453-1453[BULt];21-21,1442-1442[UP3]	.((((((((((.((((.(((((&))))).))))-)))))))))).	AGAGAAAGGAGAAGAGUAAAGA&UUUUUUUUCU-UUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4690_c0_g1_1454_TPlot.pdf
TRINITY_DN4691_c0_g1:790	si_a408	TRINITY_DN4691_c0_g1	779	799	790	-20.10	-13.30	0.661691542288557	12	1-13,799-787	14-21,786-779[UP3]	........(((((((((((((&)))))))))))))........	AAAGCAAUUGUGAACAGAGCA&UGUUUUGUUUAUAUUUAAAUA	4	0.99999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4691_c0_g1_790_TPlot.pdf
TRINITY_DN4694_c0_g1:635	si_s729	TRINITY_DN4694_c0_g1	622	644	635	-32.10	-22.00	0.685358255451713	10	1-11,644-634;12-12,632-632;13-18,630-625	x-x,633-633[BULt];x-x,631-631[BULt];19-21,624-622[UP3]	...((((((.(.(((((((((((&)))))))))))-)-))))))...	CACUCACCCUGUUCUGGGUGAUA&UAUUAUCUAGA-C-GGGUGAAUA	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN4694_c0_g1_635_TPlot.pdf
TRINITY_DN4694_c0_g1:636	si_s728	TRINITY_DN4694_c0_g1	623	645	636	-31.90	-22.00	0.689655172413793	9	2-12,644-634;13-13,632-632;14-19,630-625	1-1,645-645[UP5];x-x,633-633[BULt];x-x,631-631[BULt];20-21,624-623[UP3]	..((((((.(.(((((((((((.&.)))))))))))-)-))))))..	ACUCACCCUGUUCUGGGUGAUAC&AUAUUAUCUAGA-C-GGGUGAAU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN4694_c0_g1_636_TPlot.pdf
TRINITY_DN4694_c0_g1:637	si_s727	TRINITY_DN4694_c0_g1	624	646	637	-33.80	-22.00	0.650887573964497	9	3-13,644-634;14-14,632-632;15-20,630-625	1-2,646-645[UP5];x-x,633-633[BULt];x-x,631-631[BULt];21-21,624-624[UP3]	.((((((.(.(((((((((((..&..)))))))))))-)-)))))).	CUCACCCUGUUCUGGGUGAUACA&GAUAUUAUCUAGA-C-GGGUGAA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s727_TRINITY_DN4694_c0_g1_637_TPlot.pdf
TRINITY_DN4694_c0_g1:662	si_s600	TRINITY_DN4694_c0_g1	651	671	662	-28.20	-21.70	0.769503546099291	9.5	3-15,669-657	1-2,671-670[UP5];16-21,656-651[UP3]	......(((((((((((((..&..)))))))))))))......	CAACAUGGAUUCGCUUGGAGG&AAUCCAAGCGAAUCUUUUUUA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN4694_c0_g1_662_TPlot.pdf
TRINITY_DN4694_c0_g1:665	si_s597	TRINITY_DN4694_c0_g1	654	674	665	-28.40	-21.70	0.764084507042254	12.5	6-18,669-657	1-5,674-670[UP5];19-21,656-654[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAUGGAUUCGCUUGGAGGGAG&AUAAAUCCAAGCGAAUCUUUU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN4694_c0_g1_665_TPlot.pdf
TRINITY_DN4694_c0_g1:670	si_s611	TRINITY_DN4694_c0_g1	661	677	670	-28.20	-19.00	0.673758865248227	12	1-8,677-670;13-21,669-661	9-12,x-x[BULq]	(((((((((----((((((((&))))))))....)))))))))	UCGCUUGGA----GGGAGGAU&AUCUUUUUUAAAUCCAAGCGA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN4694_c0_g1_670_TPlot.pdf
TRINITY_DN4694_c0_g1:854	si_s220	TRINITY_DN4694_c0_g1	842	863	854	-34.70	-23.80	0.685878962536023	7.5	1-12,863-852;13-18,850-845	x-x,851-851[BULt];19-21,844-842[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UGGAUUCAUAGCGGUUUUGGAC&GUUCGAAACCGC-GUGAAUAAG	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s220_TRINITY_DN4694_c0_g1_854_TPlot.pdf
TRINITY_DN4694_c0_g1:855	si_s219	TRINITY_DN4694_c0_g1	843	864	855	-33.80	-24.00	0.710059171597633	6.5	2-13,863-852;14-19,850-845	1-1,864-864[UP5];x-x,851-851[BULt];20-21,844-843[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	GGAUUCAUAGCGGUUUUGGACU&UGUUCGAAACCGC-GUGAAUAA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN4694_c0_g1_855_TPlot.pdf
TRINITY_DN4694_c0_g1:856	si_s218	TRINITY_DN4694_c0_g1	844	865	856	-35.50	-24.30	0.684507042253521	6.5	1-1,865-865;3-14,863-852;15-20,850-845	2-2,864-864[SIL];x-x,851-851[BULt];21-21,844-844[UP3]	.((((((.((((((((((((.(&).))))))))))))-)))))).	GAUUCAUAGCGGUUUUGGACUC&GUGUUCGAAACCGC-GUGAAUA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN4694_c0_g1_856_TPlot.pdf
TRINITY_DN4694_c0_g1:857	si_s217	TRINITY_DN4694_c0_g1	845	866	857	-35.80	-24.70	0.689944134078212	5.5	1-2,866-865;4-15,863-852;16-21,850-845	3-3,864-864[SIL];x-x,851-851[BULt]	((((((.((((((((((((.((&)).))))))))))))-))))))	AUUCAUAGCGGUUUUGGACUCA&UGUGUUCGAAACCGC-GUGAAU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN4694_c0_g1_857_TPlot.pdf
TRINITY_DN4694_c0_g1:858	si_s216	TRINITY_DN4694_c0_g1	846	867	858	-35.80	-23.60	0.659217877094972	6.5	2-3,866-865;5-16,863-852;17-21,850-846	1-1,867-867[UP5];4-4,864-864[SIL];x-x,851-851[BULt]	(((((.((((((((((((.((.&.)).))))))))))))-)))))	UUCAUAGCGGUUUUGGACUCAC&UUGUGUUCGAAACCGC-GUGAA	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN4694_c0_g1_858_TPlot.pdf
TRINITY_DN4696_c0_g1:1111	si_s74	TRINITY_DN4696_c0_g1	1097	1123	1111	-25.00	-16.60	0.664	11	1-8,1123-1116;9-18,1112-1103;19-21,1099-1097	x-x,1115-1113[BULt];x-x,1102-1100[BULt]	(((...((((((((((...((((((((&))))))))---))))))))))---)))	GAAUUUAGGAAAGAAGCAUGAAAAUAG&CUAUUUUU---UUUCUUUCCU---UUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4696_c0_g1_1111_TPlot.pdf
TRINITY_DN4698_c0_g1:1261	si_a214	TRINITY_DN4698_c0_g1	1249	1270	1261	-28.80	-20.12	0.698611111111111	9.5	1-10,1270-1261;14-18,1256-1252;20-21,1250-1249	11-13,1260-1257[AILt];19-19,1251-1251[SIL]	((.(((((....((((((((((&))))))))))-...))))).))	GAGAUGAGGAUGGAUUAGUCGA&UCGACUAAUU-AAACUCAUGUU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a214_TRINITY_DN4698_c0_g1_1261_TPlot.pdf
TRINITY_DN4698_c0_g1:1262	si_a213	TRINITY_DN4698_c0_g1	1250	1271	1262	-29.00	-20.22	0.697241379310345	8	1-11,1271-1261;15-19,1256-1252;21-21,1250-1250	12-14,1260-1257[AILt];20-20,1251-1251[SIL]	(.(((((....(((((((((((&)))))))))))-...))))).)	AGAUGAGGAUGGAUUAGUCGAU&AUCGACUAAUU-AAACUCAUGU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a213_TRINITY_DN4698_c0_g1_1262_TPlot.pdf
TRINITY_DN4698_c0_g1:1265	si_a210	TRINITY_DN4698_c0_g1	1253	1274	1265	-26.70	-18.62	0.697378277153558	9.5	4-14,1271-1261;18-21,1256-1253	1-3,1274-1272[UP5];15-17,1260-1257[AILt]	((((....(((((((((((...&...)))))))))))-...))))	UGAGGAUGGAUUAGUCGAUGGA&UAAAUCGACUAAUU-AAACUCA	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a210_TRINITY_DN4698_c0_g1_1265_TPlot.pdf
TRINITY_DN4698_c0_g1:1266	si_a209	TRINITY_DN4698_c0_g1	1254	1275	1266	-26.20	-17.22	0.657251908396947	11.5	5-15,1271-1261;19-21,1256-1254	1-4,1275-1272[UP5];16-18,1260-1257[AILt]	(((....(((((((((((....&....)))))))))))-...)))	GAGGAUGGAUUAGUCGAUGGAU&AUAAAUCGACUAAUU-AAACUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a209_TRINITY_DN4698_c0_g1_1266_TPlot.pdf
TRINITY_DN4698_c0_g1:1273	si_a202	TRINITY_DN4698_c0_g1	1262	1282	1273	-27.00	-18.90	0.7	9	4-9,1279-1274;12-21,1271-1262	1-3,1282-1280[UP5];10-11,1273-1272[SIL]	((((((((((..((((((...&...))))))..))))))))))	AUUAGUCGAUGGAUUAGUUUA&UUCACUAAUAAAUCGACUAAU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN4698_c0_g1_1273_TPlot.pdf
TRINITY_DN4698_c0_g1:1516	si_s847	TRINITY_DN4698_c0_g1	1505	1525	1516	-39.00	-26.30	0.674358974358974	7.5	1-7,1525-1519;10-11,1516-1515;13-21,1513-1505	8-9,1518-1517[SIL];12-12,1514-1514[SIL]	(((((((((.((..(((((((&)))))))..)).)))))))))	CUGGGAGUCCAUGAGCUUCUU&AAGAAGCGAGUCGACUCCUAG	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s847_TRINITY_DN4698_c0_g1_1516_TPlot.pdf
TRINITY_DN4698_c0_g1:2467	si_s376	TRINITY_DN4698_c0_g1	2456	2476	2467	-42.50	-29.60	0.696470588235294	7.5	2-11,2475-2466;13-16,2464-2461;18-20,2459-2457	1-1,2476-2476[UP5];12-12,2465-2465[SIL];17-17,2460-2460[SIL];21-21,2456-2456[UP3]	.(((.((((.((((((((((.&.)))))))))).)))).))).	GGAGACGGAGACGCGGGCGGC&AUCGCUCGCGUGUCCGCCUUA	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN4698_c0_g1_2467_TPlot.pdf
TRINITY_DN4698_c0_g1:3757	si_a635	TRINITY_DN4698_c0_g1	3745	3766	3757	-26.10	-17.80	0.681992337164751	8.5	1-10,3766-3757;11-18,3755-3748	x-x,3756-3756[BULt];19-21,3747-3745[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	GAAACUCGAAAUAGAUUGACGU&AUGUCGAUUU-UUUUGAGUAAU	4	0.999999772470979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4698_c0_g1_3757_TPlot.pdf
TRINITY_DN4698_c0_g1:3760	si_a632	TRINITY_DN4698_c0_g1	3748	3769	3760	-26.10	-17.50	0.670498084291188	9.5	4-13,3766-3757;14-21,3755-3748	1-3,3769-3767[UP5];x-x,3756-3756[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	ACUCGAAAUAGAUUGACGUUGC&AUUAUGUCGAUUU-UUUUGAGU	2	0.999950798213283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4698_c0_g1_3760_TPlot.pdf
TRINITY_DN469_c0_g1:2470	si_s90	TRINITY_DN469_c0_g1	2458	2479	2470	-35.30	-23.20	0.657223796033994	7.5	2-8,2478-2472;10-17,2470-2463;18-21,2461-2458	1-1,2479-2479[UP5];9-9,2471-2471[SIL];x-x,2462-2462[BULt]	((((.((((((((.(((((((.&.))))))).))))))))-))))	CUGACAGCGAAGAUGGAGAGGA&CUUUCUUCUUCUUCGCU-UCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN469_c0_g1_2470_TPlot.pdf
TRINITY_DN469_c0_g1:2936	si_s531	TRINITY_DN469_c0_g1	2924	2945	2936	-30.00	-21.20	0.706666666666667	6	1-8,2945-2938;10-11,2936-2935;12-14,2933-2931;16-21,2929-2924	9-9,2937-2937[SIL];x-x,2934-2934[BULt];15-15,2930-2930[SIL]	((((((.(((.((.((((((((&)))))))).))-))).))))))	GAUCGGUUCACAAUGUGAUUUC&GAAAUCAUUUU-UGAUCCGAUC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN469_c0_g1_2936_TPlot.pdf
TRINITY_DN46_c0_g1:1305	si_s74	TRINITY_DN46_c0_g1	1293	1314	1305	-25.00	-17.40	0.696	7.5	3-14,1312-1301;16-21,1298-1293	1-2,1314-1313[UP5];15-15,1300-1299[AILt]	((((((..((((((((((((..&..))))))))))))-.))))))	GAGAGGUUAAGAGAAGAAAUUG&CUAUUUUUUUUCUU-UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN46_c0_g1_1305_TPlot.pdf
TRINITY_DN46_c0_g1:311	si_s449	TRINITY_DN46_c0_g1	300	320	311	-23.60	-17.20	0.728813559322034	6	1-16,320-305	17-21,304-300[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUGCCAUUGUUGUUAUAUGUA&UAUAUAUAACAACAAUUAUCU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN46_c0_g1_311_TPlot.pdf
TRINITY_DN46_c0_g1:312	si_s448	TRINITY_DN46_c0_g1	301	321	312	-23.00	-17.60	0.765217391304348	5.5	1-17,321-305	18-21,304-301[UP3]	....(((((((((((((((((&)))))))))))))))))....	UGCCAUUGUUGUUAUAUGUAG&UUAUAUAUAACAACAAUUAUC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN46_c0_g1_312_TPlot.pdf
TRINITY_DN46_c0_g1:313	si_s447	TRINITY_DN46_c0_g1	302	322	313	-21.10	-19.20	0.909952606635071	5	1-18,322-305	19-21,304-302[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCCAUUGUUGUUAUAUGUAGU&AUUAUAUAUAACAACAAUUAU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN46_c0_g1_313_TPlot.pdf
TRINITY_DN46_c0_g1:314	si_s446	TRINITY_DN46_c0_g1	303	323	314	-21.30	-19.70	0.924882629107981	4.5	1-19,323-305	20-21,304-303[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CCAUUGUUGUUAUAUGUAGUG&UAUUAUAUAUAACAACAAUUA	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN46_c0_g1_314_TPlot.pdf
TRINITY_DN46_c0_g1:315	si_s445	TRINITY_DN46_c0_g1	304	324	315	-21.10	-19.70	0.933649289099526	5	2-20,323-305	1-1,324-324[UP5];21-21,304-304[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CAUUGUUGUUAUAUGUAGUGA&AUAUUAUAUAUAACAACAAUU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN46_c0_g1_315_TPlot.pdf
TRINITY_DN46_c0_g1:316	si_s444	TRINITY_DN46_c0_g1	305	325	316	-22.80	-19.70	0.864035087719298	6	3-21,323-305	1-2,325-324[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AUUGUUGUUAUAUGUAGUGAU&CAUAUUAUAUAUAACAACAAU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN46_c0_g1_316_TPlot.pdf
TRINITY_DN46_c0_g1:317	si_s443	TRINITY_DN46_c0_g1	306	326	317	-23.50	-18.60	0.791489361702128	8	4-21,323-306	1-3,326-324[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUGUUGUUAUAUGUAGUGAUU&ACAUAUUAUAUAUAACAACAA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s443_TRINITY_DN46_c0_g1_317_TPlot.pdf
TRINITY_DN46_c0_g1:319	si_s441	TRINITY_DN46_c0_g1	308	328	319	-23.20	-16.30	0.702586206896552	12	6-21,323-308	1-5,328-324[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUUGUUAUAUGUAGUGAUUAA&UUACAUAUUAUAUAUAACAAC	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN46_c0_g1_319_TPlot.pdf
TRINITY_DN46_c0_g1:356	si_s82	TRINITY_DN46_c0_g1	345	365	356	-28.90	-20.48	0.708650519031142	9	2-4,364-362;8-20,358-346	1-1,365-365[UP5];5-7,361-359[SIL];21-21,345-345[UP3]	.(((((((((((((...(((.&.)))...))))))))))))).	UGGAAGAGGAAAGGUCUGAAC&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN46_c0_g1_356_TPlot.pdf
TRINITY_DN46_c0_g1:358	si_s80	TRINITY_DN46_c0_g1	347	367	358	-28.20	-19.38	0.687234042553191	11.5	4-6,364-362;10-21,358-347	1-3,367-365[UP5];7-9,361-359[SIL]	((((((((((((...(((...&...)))...))))))))))))	GAAGAGGAAAGGUCUGAACUA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN46_c0_g1_358_TPlot.pdf
TRINITY_DN46_c0_g1:4709	si_a143	TRINITY_DN46_c0_g1	4698	4721	4709	-25.10	-16.40	0.653386454183267	12	1-4,4721-4718;6-7,4716-4715;8-21,4711-4698	5-5,4717-4717[SIL];x-x,4714-4712[BULt]	((((((((((((((...((.((((&)))).))---))))))))))))))	CUUGAAGCAGCAAUUCAGAAUGAU&AUUAAUC---GUUGUUGUUUUAAG	3	0.999999976626698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN46_c0_g1_4709_TPlot.pdf
TRINITY_DN46_c0_g1:643	si_a788	TRINITY_DN46_c0_g1	633	652	643	-24.80	-19.30	0.778225806451613	6.5	2-11,651-642;13-21,641-633	1-1,652-652[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	UUGGAGGGU-GAGAAAUGGAG&UUCUAUUUUUCUAUUUUCCAA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN46_c0_g1_643_TPlot.pdf
TRINITY_DN46_c0_g1:644	si_a787	TRINITY_DN46_c0_g1	634	653	644	-26.30	-19.00	0.722433460076046	6.5	2-12,652-642;14-21,641-634	1-1,653-653[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	UGGAGGGU-GAGAAAUGGAGA&CUUCUAUUUUUCUAUUUUCCA	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN46_c0_g1_644_TPlot.pdf
TRINITY_DN46_c0_g1:645	si_a786	TRINITY_DN46_c0_g1	635	654	645	-26.60	-17.50	0.657894736842105	8.5	3-13,652-642;15-21,641-635	1-2,654-653[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	GGAGGGU-GAGAAAUGGAGAA&UCUUCUAUUUUUCUAUUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN46_c0_g1_645_TPlot.pdf
TRINITY_DN46_c0_g1:666	si_a24	TRINITY_DN46_c0_g1	655	675	666	-24.20	-15.80	0.652892561983471	14.5	8-20,668-656	1-7,675-669[UP5];21-21,655-655[UP3]	.(((((((((((((.......&.......))))))))))))).	AUCUUAGAGCUAAAUUAACUC&AUUUAUUUUUAGUUCUAAGAC	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN46_c0_g1_666_TPlot.pdf
TRINITY_DN46_c0_g1:6840	si_a23	TRINITY_DN46_c0_g1	6828	6849	6840	-22.80	-17.00	0.745614035087719	6	3-17,6847-6833;18-20,6831-6829	1-2,6849-6848[UP5];x-x,6832-6832[BULt];21-21,6828-6828[UP3]	.(((.(((((((((((((((..&..)))))))))))))))-))).	CCUUCAGAACUAAAAGUAAAAU&UAUUUAUUUUUAGUUCU-AAGA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN46_c0_g1_6840_TPlot.pdf
TRINITY_DN46_c0_g1:7434	si_a817	TRINITY_DN46_c0_g1	7425	7443	7434	-30.90	-21.10	0.68284789644013	5	1-11,7443-7433;14-18,7432-7428;20-20,7426-7426	12-13,x-x[BULq];19-19,7427-7427[SIL];21-21,7425-7425[UP3]	.(.(((((--(((((((((((&)))))))))))..))))).).	AUGUUUCC--UCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN46_c0_g1_7434_TPlot.pdf
TRINITY_DN46_c0_g1:8279	si_a657	TRINITY_DN46_c0_g1	8268	8287	8279	-33.80	-22.00	0.650887573964497	10.5	5-9,8283-8279;11-21,8278-8268	1-4,8287-8284[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	AUCAGUAGGCA-UUCCUAGAA&UAUCGGGAAAUGCCUAUUGAU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN46_c0_g1_8279_TPlot.pdf
TRINITY_DN46_c0_g3:1347	si_a143	TRINITY_DN46_c0_g3	1336	1359	1347	-25.10	-16.40	0.653386454183267	12	1-4,1359-1356;6-7,1354-1353;8-21,1349-1336	5-5,1355-1355[SIL];x-x,1352-1350[BULt]	((((((((((((((...((.((((&)))).))---))))))))))))))	CUUGAAGCAGCAAUUCAGAAUGAU&AUUAAUC---GUUGUUGUUUUAAG	4	0.999999993859753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN46_c0_g3_1347_TPlot.pdf
TRINITY_DN46_c0_g3:381	si_s449	TRINITY_DN46_c0_g3	371	390	381	-23.60	-15.50	0.656779661016949	5.5	1-7,390-384;9-11,382-380;13-21,379-371	8-8,383-383[SIL];12-12,x-x[BULq]	(((((((((-(((.(((((((&))))))).))).)))))))))	AGGUAAUUG-UGUAAUAUGUA&UAUAUAUAACAACAAUUAUCU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN46_c0_g3_381_TPlot.pdf
TRINITY_DN46_c1_g1:1754	si_s2	TRINITY_DN46_c1_g1	1741	1763	1754	-20.50	-13.70	0.668292682926829	9.5	1-10,1763-1754;11-12,1752-1751;13-21,1749-1741	x-x,1753-1753[BULt];x-x,1750-1750[BULt]	(((((((((.((.((((((((((&))))))))))-))-)))))))))	GUGAUGGUAUGGAUGGUAUGAAA&UUUUAUAUUA-CU-UAUUAUUAC	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN46_c1_g1_1754_TPlot.pdf
TRINITY_DN46_c1_g1:1833	si_s479	TRINITY_DN46_c1_g1	1821	1842	1833	-26.40	-17.30	0.65530303030303	7	1-13,1842-1830;14-18,1828-1824	x-x,1829-1829[BULt];19-21,1823-1821[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	GGAGAGUAUAAUAUAGGAUUUG&CGGAUCCUAUAUU-UAUUUAAA	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN46_c1_g1_1833_TPlot.pdf
TRINITY_DN46_c1_g1:4119	si_a391	TRINITY_DN46_c1_g1	4109	4128	4119	-22.80	-15.60	0.684210526315789	3.5	1-15,4128-4114;17-20,4113-4110	16-16,x-x[BULq];21-21,4109-4109[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	UACAA-UUUAUGUUCUUAAUU&AAUUAAGAAUAUAGAAUUGUU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN46_c1_g1_4119_TPlot.pdf
TRINITY_DN46_c1_g1:4124	si_a386	TRINITY_DN46_c1_g1	4113	4133	4124	-24.80	-17.20	0.693548387096774	9	5-20,4129-4114	1-4,4133-4130[UP5];21-21,4113-4113[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUUUAUGUUCUUAAUUCUCUG&UUUCGAAUUAAGAAUAUAGAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN46_c1_g1_4124_TPlot.pdf
TRINITY_DN46_c2_g1:4394	si_a186	TRINITY_DN46_c2_g1	4383	4404	4394	-31.50	-21.50	0.682539682539683	10	2-7,4403-4398;8-8,4396-4396;11-21,4393-4383	1-1,4404-4404[UP5];x-x,4397-4397[BULt];9-10,4395-4394[SIL]	(((((((((((..(.((((((.&.))))))-)..)))))))))))	GUGGAUAGGGAUUGUGUGUUAA&AUAAUAU-CUUUCCCUGUUCAC	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN46_c2_g1_4394_TPlot.pdf
TRINITY_DN47002_c0_g1:219	si_s76	TRINITY_DN47002_c0_g1	208	228	219	-23.60	-17.30	0.733050847457627	10	5-15,224-214;17-21,212-208	1-4,228-225[UP5];16-16,213-213[SIL]	(((((.(((((((((((....&....))))))))))).)))))	AAGAAUGGAAGGAGAAAUGGU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN47002_c0_g1_219_TPlot.pdf
TRINITY_DN47002_c0_g1:220	si_s75	TRINITY_DN47002_c0_g1	209	229	220	-24.00	-16.40	0.683333333333333	12	6-16,224-214;18-21,212-209	1-5,229-225[UP5];17-17,213-213[SIL]	((((.(((((((((((.....&.....))))))))))).))))	AGAAUGGAAGGAGAAAUGGUC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN47002_c0_g1_220_TPlot.pdf
TRINITY_DN4700_c0_g1:1071	si_s539	TRINITY_DN4700_c0_g1	1059	1080	1071	-29.00	-19.50	0.672413793103448	10.5	3-15,1078-1066;18-20,1062-1060	1-2,1080-1079[UP5];16-17,1065-1063[AILt];21-21,1059-1059[UP3]	.(((...(((((((((((((..&..)))))))))))))-..))).	GCUGGUGUUGGUCGGGUCAGUU&UUUUGAUCCGAUCAA-AAUAGA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s539_TRINITY_DN4700_c0_g1_1071_TPlot.pdf
TRINITY_DN4700_c0_g1:1508	si_s91	TRINITY_DN4700_c0_g1	1497	1517	1508	-34.70	-23.90	0.688760806916426	9	1-10,1517-1508;12-19,1506-1499	11-11,1507-1507[SIL];20-21,1498-1497[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AUCGGAGUGGCGAGGAGGAGA&UUUCUUCUUCUUCGCUUCGGA	4	0.999999991631285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4700_c0_g1_1508_TPlot.pdf
TRINITY_DN4700_c0_g1:1512	si_s315	TRINITY_DN4700_c0_g1	1501	1521	1512	-31.60	-22.50	0.712025316455696	11.5	4-5,1518-1517;7-19,1515-1503	1-3,1521-1519[UP5];6-6,1516-1516[SIL];20-21,1502-1501[UP3]	..(((((((((((((.((...&...)).)))))))))))))..	GAGUGGCGAGGAGGAGAGUGG&AUUCUGUCCUUCUUGUUACAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN4700_c0_g1_1512_TPlot.pdf
TRINITY_DN4700_c0_g1:1825	si_a785	TRINITY_DN4700_c0_g1	1814	1835	1825	-25.90	-17.08	0.659459459459459	13	1-7,1835-1829;13-21,1822-1814	8-12,1828-1823[AILt]	(((((((((......(((((((&)))))))-.....)))))))))	GGAGAUAGACAACGAAGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4700_c0_g1_1825_TPlot.pdf
TRINITY_DN4700_c0_g1:3652	si_s87	TRINITY_DN4700_c0_g1	3641	3667	3652	-32.90	-21.40	0.650455927051672	16	1-7,3667-3661;8-9,3658-3657;10-21,3652-3641	x-x,3660-3659[BULt];x-x,3656-3653[BULt]	((((((((((((....((..(((((((&)))))))--))----))))))))))))	GAGCGGAGAAGACAACAGCCAGGGGGA&UUCCUUU--CU----UCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4700_c0_g1_3652_TPlot.pdf
TRINITY_DN4700_c0_g1:5074	si_a284	TRINITY_DN4700_c0_g1	5063	5083	5074	-28.30	-20.20	0.713780918727915	12	4-14,5080-5070	1-3,5083-5081[UP5];15-21,5069-5063[UP3]	.......(((((((((((...&...))))))))))).......	CUGCUCCUCCAAGCGAUCAUC&AAAGAUCGCUUGGAUUUAAAA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN4700_c0_g1_5074_TPlot.pdf
TRINITY_DN4700_c0_g1:5150	si_a301	TRINITY_DN4700_c0_g1	5139	5159	5150	-27.80	-18.10	0.651079136690648	16.5	9-21,5151-5139	1-8,5159-5152[UP5]	(((((((((((((........&........)))))))))))))	AAGUCCGGGCGAAACGAGCAG&AAAAAAGAUUCGCUUGGAUUU	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN4700_c0_g1_5150_TPlot.pdf
TRINITY_DN47027_c0_g1:171	si_a848	TRINITY_DN47027_c0_g1	160	181	171	-31.30	-20.70	0.661341853035144	9	3-7,179-175;9-19,172-162	1-2,181-180[UP5];8-8,174-173[AILt];20-21,161-160[UP3]	..(((((((((((..(((((..&..)))))-.)))))))))))..	GGGGAUUUCAAGUACAGCAAAA&AGUUGCU-AACUUGAAAUCCAA	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN47027_c0_g1_171_TPlot.pdf
TRINITY_DN4705_c0_g2:1128	si_s82	TRINITY_DN4705_c0_g2	1117	1137	1128	-28.90	-19.90	0.688581314878893	7.5	2-8,1136-1130;10-19,1128-1119	1-1,1137-1137[UP5];9-9,1129-1129[SIL];20-21,1118-1117[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	AUGAGGAAGAAGAGGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4705_c0_g2_1128_TPlot.pdf
TRINITY_DN4707_c0_g1:1684	si_a774	TRINITY_DN4707_c0_g1	1673	1694	1684	-29.20	-19.40	0.664383561643836	11	1-2,1694-1693;4-9,1691-1686;12-19,1682-1675	3-3,1692-1692[SIL];10-11,1685-1683[AILt];20-21,1674-1673[UP3]	..((((((((...((((((.((&)).))))))-..))))))))..	AUUAGAAGAGGUGGAAUCGUUC&GAUUGAUUC-AACUCUUCUAUU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN4707_c0_g1_1684_TPlot.pdf
TRINITY_DN4707_c0_g1:1951	si_a329	TRINITY_DN4707_c0_g1	1939	1960	1951	-29.60	-20.20	0.682432432432432	8.5	2-7,1959-1954;10-19,1951-1942;20-21,1940-1939	1-1,1960-1960[UP5];8-9,1953-1952[SIL];x-x,1941-1941[BULt]	((.((((((((((..((((((.&.))))))..))))))))))-))	CGCGGACGAGGAAACGGAAAAG&AUUUUUUUAUUCCUUGUCC-CG	4	0.999988024589162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4707_c0_g1_1951_TPlot.pdf
TRINITY_DN4707_c0_g1:221	si_s276	TRINITY_DN4707_c0_g1	207	230	221	-32.30	-22.50	0.696594427244582	7.5	2-15,229-216;16-19,212-209	1-1,230-230[UP5];x-x,215-213[BULt];20-21,208-207[UP3]	..((((...((((((((((((((.&.))))))))))))))---))))..	UAGGGUUAUGUGUUAUGUCGAUUA&AAAUCGACAUAAUAC---GCCUAG	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s276_TRINITY_DN4707_c0_g1_221_TPlot.pdf
TRINITY_DN4707_c0_g1:558	si_s76	TRINITY_DN4707_c0_g1	547	567	558	-23.60	-16.30	0.690677966101695	17	9-20,559-548	1-8,567-560[UP5];21-21,547-547[UP3]	.((((((((((((........&........)))))))))))).	UGGAAGGGAAAGAUGUACUAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4707_c0_g1_558_TPlot.pdf
TRINITY_DN4707_c0_g1:559	si_s75	TRINITY_DN4707_c0_g1	548	568	559	-24.00	-16.30	0.679166666666667	18	10-21,559-548	1-9,568-560[UP5]	((((((((((((.........&.........))))))))))))	GGAAGGGAAAGAUGUACUAGU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4707_c0_g1_559_TPlot.pdf
TRINITY_DN47089_c0_g1:101	si_a136	TRINITY_DN47089_c0_g1	91	110	101	-25.70	-17.00	0.66147859922179	5.5	3-13,108-98;15-21,97-91	1-2,110-109[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	CAACAAU-AUUAAUUGCUACU&AAUAGUAAUUAAUCGUUGUUG	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN47089_c0_g1_101_TPlot.pdf
TRINITY_DN47089_c0_g1:57	si_s31	TRINITY_DN47089_c0_g1	46	66	57	-24.80	-17.90	0.721774193548387	7.5	2-8,65-59;11-20,56-47	1-1,66-66[UP5];9-10,58-57[SIL];21-21,46-46[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	GUAUUGAAGGUACAGUUGCAC&UUGCAACUAAAUCUUUAAUAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN47089_c0_g1_57_TPlot.pdf
TRINITY_DN47089_c0_g1:98	si_a139	TRINITY_DN47089_c0_g1	88	107	98	-25.90	-17.90	0.691119691119691	5	1-10,107-98;12-20,97-89	11-11,x-x[BULq];21-21,88-88[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	UAACAACAAU-AUUAAUUGCU&AGUAAUUAAUCGUUGUUGUUU	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN47089_c0_g1_98_TPlot.pdf
TRINITY_DN4708_c0_g1:1088	si_a412	TRINITY_DN4708_c0_g1	1077	1098	1088	-18.30	-13.90	0.759562841530055	6	3-5,1096-1094;6-21,1092-1077	1-2,1098-1097[UP5];x-x,1093-1093[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	UAUUUAUUUAAAUAUGCAACUU&UUGUU-UAUAUUUAAAUAAAUA	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN4708_c0_g1_1088_TPlot.pdf
TRINITY_DN4709_c0_g1:1135	si_a632	TRINITY_DN4709_c0_g1	1123	1144	1135	-26.10	-17.00	0.651340996168582	7.5	2-10,1143-1135;12-13,1133-1132;15-21,1129-1123	1-1,1144-1144[UP5];11-11,1134-1134[SIL];14-14,1131-1130[AILt]	(((((((..((.(((((((((.&.))))))))).))-.)))))))	GCUCAGAUCGAUUCGAUAUAAC&AUUAUGUCGAUUU-UUUUGAGU	4	0.999999999968221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN4709_c0_g1_1135_TPlot.pdf
TRINITY_DN47104_c0_g1:146	si_s68	TRINITY_DN47104_c0_g1	135	155	146	-23.10	-15.30	0.662337662337662	9.5	4-8,152-148;10-21,146-135	1-3,155-153[UP5];9-9,147-147[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAAGAAGAAAGAGAGAGGCAG&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN47104_c0_g1_146_TPlot.pdf
TRINITY_DN4711_c0_g1:1924	si_s79	TRINITY_DN4711_c0_g1	1912	1933	1924	-26.20	-18.00	0.687022900763359	7.5	2-8,1932-1926;11-13,1923-1921;14-21,1919-1912	1-1,1933-1933[UP5];9-10,1925-1924[SIL];x-x,1920-1920[BULt]	((((((((.(((..(((((((.&.)))))))..)))-))))))))	GAGAAGAACAGGCUAGAAGAAC&UUUUUUCUUUCCU-UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4711_c0_g1_1924_TPlot.pdf
TRINITY_DN4713_c0_g1:416	si_s632	TRINITY_DN4713_c0_g1	406	426	416	-38.20	-26.30	0.68848167539267	7.5	2-7,425-420;8-16,418-410;18-20,409-407	1-1,426-426[UP5];x-x,419-419[BULt];17-17,x-x[BULq];21-21,406-406[UP3]	.(((-(((((((((.((((((.&.))))))-))))))))).))).	UGGC-AGCGCCUGCUGGAAAGG&UCUUUUC-GUAGGCGUUUGCCC	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN4713_c0_g1_416_TPlot.pdf
TRINITY_DN4713_c0_g2:170	si_a410	TRINITY_DN4713_c0_g2	158	179	170	-17.80	-11.80	0.662921348314607	6	2-14,178-166;15-18,164-161	1-1,179-179[UP5];x-x,165-165[BULt];19-21,160-158[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	GUAAUUUAAAAUGUAAACAAAG&UUUUGUUUAUAUUU-AAAUAAA	2	0.999999998088998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4713_c0_g2_170_TPlot.pdf
TRINITY_DN4713_c0_g2:621	si_s202	TRINITY_DN4713_c0_g2	607	630	621	-33.60	-22.50	0.669642857142857	11	3-10,628-621;11-16,619-614;17-20,611-608	1-2,630-629[UP5];x-x,620-620[BULt];x-x,613-612[BULt];21-21,607-607[UP3]	.((((..((((((.((((((((..&..))))))))-))))))--)))).	UGCACUGGACUGGCUGCGUUCCCU&UUGGAAUGUA-CCAGUU--GUGUU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN4713_c0_g2_621_TPlot.pdf
TRINITY_DN4713_c0_g2:794	si_a125	TRINITY_DN4713_c0_g2	783	803	794	-25.00	-19.30	0.772	9	2-3,802-801;5-18,799-786	1-1,803-803[UP5];4-4,800-800[SIL];19-21,785-783[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	AACUGCUGUUGCUAUGAUGCC&UGUUUUAUAGCAAUAGUAAUU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN4713_c0_g2_794_TPlot.pdf
TRINITY_DN4714_c0_g1:671	si_s20	TRINITY_DN4714_c0_g1	660	684	671	-27.80	-18.64	0.670503597122302	17.5	1-5,684-680;9-20,672-661	6-8,679-673[AILt];21-21,660-660[UP3]	.((((((((((((.......(((((&)))))----...)))))))))))).	GUGGUUGCAGUCAUUUGAUUUGGUA&UACUA----UAUUGAUUGCAACUAA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN4714_c0_g1_671_TPlot.pdf
TRINITY_DN4714_c0_g1:672	si_s19	TRINITY_DN4714_c0_g1	661	685	672	-27.80	-19.14	0.688489208633093	16	1-6,685-680;10-21,672-661	7-9,679-673[AILt]	((((((((((((.......((((((&))))))----...))))))))))))	UGGUUGCAGUCAUUUGAUUUGGUAA&UUACUA----UAUUGAUUGCAACUA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN4714_c0_g1_672_TPlot.pdf
TRINITY_DN4714_c0_g1:675	si_s16	TRINITY_DN4714_c0_g1	664	688	675	-25.60	-16.84	0.6578125	16	1-9,688-680;13-21,672-664	10-12,679-673[AILt]	(((((((((.......(((((((((&)))))))))----...)))))))))	UUGCAGUCAUUUGAUUUGGUAAUAG&UUAUUACUA----UAUUGAUUGCAA	2	0.992006333570158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN4714_c0_g1_675_TPlot.pdf
TRINITY_DN4714_c0_g1:680	si_s15	TRINITY_DN4714_c0_g1	665	689	680	-25.60	-17.64	0.6890625	15.5	1-10,689-680;14-21,672-665	11-13,679-673[AILt]	((((((((.......((((((((((&))))))))))----...))))))))	UGCAGUCAUUUGAUUUGGUAAUAGU&AUUAUUACUA----UAUUGAUUGCA	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN4714_c0_g1_680_TPlot.pdf
TRINITY_DN4714_c0_g1:682	si_s13	TRINITY_DN4714_c0_g1	667	691	682	-22.90	-15.04	0.656768558951965	13.5	1-12,691-680;16-21,672-667	13-15,679-673[AILt]	((((((.......((((((((((((&))))))))))))----...))))))	CAGUCAUUUGAUUUGGUAAUAGUAA&UUAUUAUUACUA----UAUUGAUUG	2	0.996655159151393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN4714_c0_g1_682_TPlot.pdf
TRINITY_DN4715_c0_g1:1069	si_s607	TRINITY_DN4715_c0_g1	1060	1078	1069	-27.60	-18.60	0.673913043478261	7	1-14,1078-1065;17-19,1064-1062	15-16,x-x[BULq];20-21,1061-1060[UP3]	..(((--((((((((((((((&))))))))))))))..)))..	UAGGA--UAAAGAAGGUUUGC&GCGAAUCUUUUUUAAAUCCAA	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN4715_c0_g1_1069_TPlot.pdf
TRINITY_DN4715_c0_g1:1070	si_s606	TRINITY_DN4715_c0_g1	1061	1079	1070	-28.20	-18.60	0.659574468085106	7	2-15,1078-1065;18-20,1064-1062	1-1,1079-1079[UP5];16-17,x-x[BULq];21-21,1061-1061[UP3]	.(((--((((((((((((((.&.))))))))))))))..))).	AGGA--UAAAGAAGGUUUGCG&AGCGAAUCUUUUUUAAAUCCA	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN4715_c0_g1_1070_TPlot.pdf
TRINITY_DN4715_c0_g1:1071	si_s605	TRINITY_DN4715_c0_g1	1062	1080	1071	-27.50	-18.10	0.658181818181818	8	3-16,1078-1065;19-21,1064-1062	1-2,1080-1079[UP5];17-18,x-x[BULq]	(((--((((((((((((((..&..))))))))))))))..)))	GGA--UAAAGAAGGUUUGCGC&AAGCGAAUCUUUUUUAAAUCC	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN4715_c0_g1_1071_TPlot.pdf
TRINITY_DN4715_c0_g1:1390	si_s695	TRINITY_DN4715_c0_g1	1379	1399	1390	-24.70	-17.10	0.692307692307692	14	6-7,1394-1393;9-21,1391-1379	1-5,1399-1395[UP5];8-8,1392-1392[SIL]	(((((((((((((.((.....&.....)).)))))))))))))	GCUGAUGGAUCGAGUGCUUGU&UUAAUUAGUCGAUUUAUUAGU	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN4715_c0_g1_1390_TPlot.pdf
TRINITY_DN4715_c0_g1:1395	si_s327	TRINITY_DN4715_c0_g1	1384	1404	1395	-28.70	-19.50	0.679442508710801	6.5	1-9,1404-1396;11-13,1394-1392;15-21,1390-1384	10-10,1395-1395[SIL];14-14,1391-1391[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	UGGAUCGAGUGCUUGUGGCAG&UUGUUACAAACAUACGAUUCA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s327_TRINITY_DN4715_c0_g1_1395_TPlot.pdf
TRINITY_DN4715_c0_g1:1634	si_s206	TRINITY_DN4715_c0_g1	1622	1643	1634	-33.00	-21.60	0.654545454545455	11	4-13,1640-1631;15-21,1628-1622	1-3,1643-1641[UP5];14-14,1630-1629[AILt]	(((((((..((((((((((...&...))))))))))-.)))))))	UUCGGACUGUGGCUGGUGCUAA&AAUGUACCAGUUG-UGUUCGAA	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN4715_c0_g1_1634_TPlot.pdf
TRINITY_DN4715_c0_g1:550	si_s75	TRINITY_DN4715_c0_g1	538	561	550	-24.00	-16.00	0.666666666666667	9.5	1-6,561-556;7-16,553-544;17-20,542-539	x-x,555-554[BULt];x-x,543-543[BULt];21-21,538-538[UP3]	.((((.((((((((((..((((((&))))))--))))))))))-)))).	CGAGAUGGAAAGGAAACUGAGAUA&UAUUUU--UUUUCUUUCC-UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4715_c0_g1_550_TPlot.pdf
TRINITY_DN4715_c0_g1:877	si_a746	TRINITY_DN4715_c0_g1	859	886	877	-41.30	-28.60	0.692493946731235	11.5	1-12,886-875;13-14,873-872;15-21,865-859	x-x,874-874[BULt];x-x,871-866[BULt]	(((((((......((.((((((((((((&))))))))))))-))------)))))))	CAGAGGACGUCUCGGUUUUGUGGCCGGG&CCUGGCCAUGAA-CC------UCCUUUG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN4715_c0_g1_877_TPlot.pdf
TRINITY_DN4715_c0_g1:878	si_a745	TRINITY_DN4715_c0_g1	860	887	878	-42.00	-28.70	0.683333333333333	10.5	1-13,887-875;14-15,873-872;16-21,865-860	x-x,874-874[BULt];x-x,871-866[BULt]	((((((......((.(((((((((((((&)))))))))))))-))------))))))	AGAGGACGUCUCGGUUUUGUGGCCGGGG&CCCUGGCCAUGAA-CC------UCCUUU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN4715_c0_g1_878_TPlot.pdf
TRINITY_DN4715_c0_g1:883	si_a740	TRINITY_DN4715_c0_g1	871	891	883	-40.60	-27.70	0.682266009852217	7	2-8,890-884;10-18,883-875;19-20,873-872	1-1,891-891[UP5];9-9,x-x[BULq];x-x,874-874[BULt];21-21,871-871[UP3]	.((.(((((((((-(((((((.&.))))))).)))))))))-)).	CGGUUUUGUGGCC-GGGGUGAU&UUUACCCCUGGCCAUGAA-CCU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a740_TRINITY_DN4715_c0_g1_883_TPlot.pdf
TRINITY_DN4715_c0_g2:575	si_s87	TRINITY_DN4715_c0_g2	561	585	575	-32.90	-22.60	0.68693009118541	11	1-7,585-579;8-15,577-570;16-19,566-563	x-x,578-578[BULt];x-x,569-567[BULt];20-21,562-561[UP3]	..((((...((((((((.(((((((&)))))))-))))))))---))))..	UCGCGAAAAGGAGGAGGAAGAGGAG&UUCCUUU-CUUCUUCU---UCGCUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4715_c0_g2_575_TPlot.pdf
TRINITY_DN4715_c0_g2:576	si_s86	TRINITY_DN4715_c0_g2	562	586	576	-32.90	-22.70	0.689969604863222	11	2-8,585-579;9-16,577-570;17-20,566-563	1-1,586-586[UP5];x-x,578-578[BULt];x-x,569-567[BULt];21-21,562-562[UP3]	.((((...((((((((.(((((((.&.)))))))-))))))))---)))).	CGCGAAAAGGAGGAGGAAGAGGAGC&UUUCCUUU-CUUCUUCU---UCGCU	3	0.999999999999947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4715_c0_g2_576_TPlot.pdf
TRINITY_DN4715_c0_g2:577	si_s85	TRINITY_DN4715_c0_g2	563	587	577	-33.80	-22.40	0.662721893491124	12	3-9,585-579;10-17,577-570;18-21,566-563	1-2,587-586[UP5];x-x,578-578[BULt];x-x,569-567[BULt]	((((...((((((((.(((((((..&..)))))))-))))))))---))))	GCGAAAAGGAGGAGGAAGAGGAGCC&CUUUCCUUU-CUUCUUCU---UCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4715_c0_g2_577_TPlot.pdf
TRINITY_DN4715_c0_g2:580	si_s76	TRINITY_DN4715_c0_g2	568	589	580	-23.60	-15.50	0.656779661016949	12.5	5-14,585-576;15-21,574-568	1-4,589-586[UP5];x-x,575-575[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	AAGGAGGAGGAAGAGGAGCCGA&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4715_c0_g2_580_TPlot.pdf
TRINITY_DN4715_c0_g2:961	si_a497	TRINITY_DN4715_c0_g2	952	970	961	-32.00	-22.30	0.696875	7	1-11,970-960;14-21,959-952	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	GAGGAGGA--AGAAGCGACGU&AUGUCGUUUUUCGUCUUCCUU	3	0.999999968968324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4715_c0_g2_961_TPlot.pdf
TRINITY_DN4715_c0_g2:962	si_a496	TRINITY_DN4715_c0_g2	953	971	962	-32.40	-22.50	0.694444444444444	5.5	1-12,971-960;15-21,959-953	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGGAGGA--AGAAGCGACGUA&UAUGUCGUUUUUCGUCUUCCU	3	0.999996459327431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN4715_c0_g2_962_TPlot.pdf
TRINITY_DN4715_c0_g2:963	si_a495	TRINITY_DN4715_c0_g2	951	972	963	-31.90	-21.70	0.68025078369906	7.5	2-13,971-960;14-14,958-958;16-20,956-952	1-1,972-972[UP5];x-x,959-959[BULt];15-15,957-957[SIL];21-21,951-951[UP3]	.(((((.(.((((((((((((.&.))))))))))))-).))))).	AGAGGAGGAAGAAGCGACGUAA&AUAUGUCGUUUUU-CGUCUUCC	3	0.999999124105573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4715_c0_g2_963_TPlot.pdf
TRINITY_DN4715_c0_g2:964	si_a494	TRINITY_DN4715_c0_g2	952	973	964	-29.50	-21.70	0.735593220338983	8	3-14,971-960;15-15,958-958;17-21,956-952	1-2,973-972[UP5];x-x,959-959[BULt];16-16,957-957[SIL]	(((((.(.((((((((((((..&..))))))))))))-).)))))	GAGGAGGAAGAAGCGACGUAAG&AAUAUGUCGUUUUU-CGUCUUC	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN4715_c0_g2_964_TPlot.pdf
TRINITY_DN47184_c0_g1:334	si_s76	TRINITY_DN47184_c0_g1	323	343	334	-23.60	-15.80	0.669491525423729	16	7-8,337-336;10-21,334-323	1-6,343-338[UP5];9-9,335-335[SIL]	((((((((((((.((......&......)).))))))))))))	AGGAGAGGAGAGUGAUUAUGA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN47184_c0_g1_334_TPlot.pdf
TRINITY_DN47184_c0_g1:344	si_s523	TRINITY_DN47184_c0_g1	329	353	344	-24.50	-16.00	0.653061224489796	14.5	1-10,353-344;11-20,339-330	x-x,343-340[BULt];21-21,329-329[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	GGAGAGUGAUUAUGAUUGAGUUGGG&CUUAAUUCGA----AAUCAUUUUUG	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN47184_c0_g1_344_TPlot.pdf
TRINITY_DN47184_c0_g1:347	si_s520	TRINITY_DN47184_c0_g1	332	356	347	-24.00	-17.40	0.725	10	1-13,356-344;14-21,339-332	x-x,343-340[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	GAGUGAUUAUGAUUGAGUUGGGAGU&AUUCUUAAUUCGA----AAUCAUUU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN47184_c0_g1_347_TPlot.pdf
TRINITY_DN47184_c0_g1:349	si_s518	TRINITY_DN47184_c0_g1	334	358	349	-24.60	-16.80	0.682926829268293	10	2-15,357-344;16-21,339-334	1-1,358-358[UP5];x-x,343-340[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	GUGAUUAUGAUUGAGUUGGGAGUAA&AUAUUCUUAAUUCGA----AAUCAU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN47184_c0_g1_349_TPlot.pdf
TRINITY_DN4718_c0_g1:11704	si_s89	TRINITY_DN4718_c0_g1	11693	11713	11704	-35.30	-23.20	0.657223796033994	7.5	3-13,11711-11701;15-20,11699-11694	1-2,11713-11712[UP5];14-14,11700-11700[SIL];21-21,11693-11693[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	UGGGGCGCGGAAGAAGGAAAG&CCUUUCUUCUUCUUCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN4718_c0_g1_11704_TPlot.pdf
TRINITY_DN4718_c0_g1:11705	si_s88	TRINITY_DN4718_c0_g1	11694	11714	11705	-34.80	-23.50	0.675287356321839	5.5	1-2,11714-11713;4-14,11711-11701;16-21,11699-11694	3-3,11712-11712[SIL];15-15,11700-11700[SIL]	((((((.(((((((((((.((&)).))))))))))).))))))	GGGGCGCGGAAGAAGGAAAGA&UCCUUUCUUCUUCUUCGCUUC	3	0.999999999999248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4718_c0_g1_11705_TPlot.pdf
TRINITY_DN4718_c0_g1:7740	si_a146	TRINITY_DN4718_c0_g1	7728	7750	7740	-29.70	-20.90	0.703703703703704	10	3-5,7748-7746;6-15,7744-7735;17-21,7732-7728	1-2,7750-7749[UP5];x-x,7745-7745[BULt];16-16,7734-7733[AILt]	(((((..((((((((((.(((..&..)))-))))))))))-.)))))	GACCUCGAAAGCAGCAGUCGAAG&AAUCG-UUGUUGUUUU-AAGGUC	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN4718_c0_g1_7740_TPlot.pdf
TRINITY_DN4718_c0_g1:7819	si_s313	TRINITY_DN4718_c0_g1	7808	7827	7819	-30.80	-20.30	0.659090909090909	7	2-7,7826-7821;9-19,7820-7810	1-1,7827-7827[UP5];8-8,x-x[BULq];20-21,7809-7808[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	GCAACAAGAAGGA-GGAGUUG&AAAUUCUGUCCUUCUUGUUAC	2	0.999931146851312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN4718_c0_g1_7819_TPlot.pdf
TRINITY_DN4718_c0_g1:7820	si_s312	TRINITY_DN4718_c0_g1	7809	7828	7820	-29.00	-20.30	0.7	8	3-8,7826-7821;10-20,7820-7810	1-2,7828-7827[UP5];9-9,x-x[BULq];21-21,7809-7809[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	CAACAAGAAGGA-GGAGUUGU&AAAAUUCUGUCCUUCUUGUUA	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4718_c0_g1_7820_TPlot.pdf
TRINITY_DN4718_c0_g1:7821	si_s311	TRINITY_DN4718_c0_g1	7810	7829	7821	-30.60	-20.10	0.656862745098039	9	4-9,7826-7821;11-21,7820-7810	1-3,7829-7827[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	AACAAGAAGGA-GGAGUUGUG&GAAAAUUCUGUCCUUCUUGUU	2	0.999399594143759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN4718_c0_g1_7821_TPlot.pdf
TRINITY_DN471_c0_g1:1730	si_s430	TRINITY_DN471_c0_g1	1717	1739	1730	-21.30	-14.70	0.690140845070423	8	2-10,1738-1730;12-21,1726-1717	1-1,1739-1739[UP5];11-11,1729-1727[AILt]	((((((((((...(((((((((.&.)))))))))--.))))))))))	UAGUAUGUGAAUAUAUUGUUAUC&UAUAACAAUA--AUUACAUAUUA	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN471_c0_g1_1730_TPlot.pdf
TRINITY_DN47218_c0_g1:518	si_s312	TRINITY_DN47218_c0_g1	507	527	518	-29.00	-19.30	0.66551724137931	12	4-8,524-520;11-20,517-508	1-3,527-525[UP5];9-10,519-518[SIL];21-21,507-507[UP3]	.((((((((((..(((((...&...)))))..)))))))))).	AGGCAAGAAGGUGAGAGUAUA&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999979205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN47218_c0_g1_518_TPlot.pdf
TRINITY_DN47218_c0_g1:667	si_s67	TRINITY_DN47218_c0_g1	655	678	667	-25.60	-17.30	0.67578125	7.5	1-4,678-675;5-16,672-661;17-21,659-655	x-x,674-673[BULt];x-x,660-660[BULt]	(((((.((((((((((((..((((&))))--))))))))))))-)))))	AAGAGAAAAAAAUGGGAGCCUUGC&GCAA--CUUCUAUUUUUU-UUCUU	3	0.999999998680878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN47218_c0_g1_667_TPlot.pdf
TRINITY_DN47218_c0_g1:668	si_s66	TRINITY_DN47218_c0_g1	656	679	668	-26.30	-17.50	0.665399239543726	7.5	1-5,679-675;6-17,672-661;18-21,659-656	x-x,674-673[BULt];x-x,660-660[BULt]	((((.((((((((((((..(((((&)))))--))))))))))))-))))	AGAGAAAAAAAUGGGAGCCUUGCU&AGCAA--CUUCUAUUUUUU-UUCU	2	0.999991057568356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN47218_c0_g1_668_TPlot.pdf
TRINITY_DN47218_c0_g1:669	si_s65	TRINITY_DN47218_c0_g1	658	680	669	-26.00	-17.10	0.657692307692308	8.5	2-6,679-675;7-20,672-659	1-1,680-680[UP5];x-x,674-673[BULt];21-21,658-658[UP3]	.((((((((((((((..(((((.&.)))))--)))))))))))))).	AGAAAAAAAUGGGAGCCUUGCUU&UAGCAA--CUUCUAUUUUUUUUC	3	0.999999976626698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN47218_c0_g1_669_TPlot.pdf
TRINITY_DN47225_c0_g1:152	si_s209	TRINITY_DN47225_c0_g1	141	161	152	-36.20	-23.70	0.654696132596685	8	1-2,161-160;4-6,159-157;7-8,155-154;11-21,151-141	3-3,x-x[BULq];x-x,156-156[BULt];9-10,153-152[SIL]	(((((((((((..((.(((-((&)).)))-))..)))))))))))	GGUUUCGAACAGCACAUGG-AC&GUACCA-GUUGUGUUCGAAACC	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s209_TRINITY_DN47225_c0_g1_152_TPlot.pdf
TRINITY_DN4722_c0_g1:163	si_s642	TRINITY_DN4722_c0_g1	153	173	163	-38.60	-25.20	0.652849740932642	6	1-9,173-165;10-13,163-160;16-21,158-153	x-x,164-164[BULt];14-15,159-159[AILq]	((((((.-((((.(((((((((&)))))))))-))))..))))))	AUUGUAG-GAGGAGUAAAUGCC&GGCGUUUGC-CCUCGAUACAAU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN4722_c0_g1_163_TPlot.pdf
TRINITY_DN4722_c0_g1:718	si_a783	TRINITY_DN4722_c0_g1	707	728	718	-24.70	-16.80	0.680161943319838	8	1-6,728-723;8-10,720-718;12-21,716-707	7-7,722-721[AILt];11-11,717-717[SIL]	((((((((((.(((..((((((&))))))-.))).))))))))))	GAAUGGAAAACUAGUUGGAGUU&AACUCU-UCUAUUUUUCUAUUU	2	0.999999909447127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4722_c0_g1_718_TPlot.pdf
TRINITY_DN4722_c0_g1:719	si_a782	TRINITY_DN4722_c0_g1	708	729	719	-26.40	-18.10	0.685606060606061	7.5	1-7,729-723;9-11,720-718;13-21,716-708	8-8,722-721[AILt];12-12,717-717[SIL]	(((((((((.(((..(((((((&)))))))-.))).)))))))))	AAUGGAAAACUAGUUGGAGUUG&CAACUCU-UCUAUUUUUCUAUU	3	0.999992202311982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN4722_c0_g1_719_TPlot.pdf
TRINITY_DN4723_c0_g1:1464	si_s206	TRINITY_DN4723_c0_g1	1454	1473	1464	-33.00	-21.50	0.651515151515151	5.5	1-15,1473-1459;18-20,1457-1455	16-17,1458-1458[AILq];21-21,1454-1454[UP3]	.(((.-(((((((((((((((&)))))))))))))))..))).	AUCGU-CAUGAUUGGUACAUU&AAUGUACCAGUUGUGUUCGAA	3	0.999840799792015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN4723_c0_g1_1464_TPlot.pdf
TRINITY_DN4723_c0_g1:353	si_a75	TRINITY_DN4723_c0_g1	341	362	353	-21.30	-14.20	0.666666666666667	6	1-3,362-360;5-14,358-349;15-21,347-341	4-4,359-359[SIL];x-x,348-348[BULt]	(((((((.((((((((((.(((&))).))))))))))-)))))))	UUAGUAGCUGGAAGACAAAUUG&CAAAUUGUUUUUCA-UUAUUAA	3	0.999999999998675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN4723_c0_g1_353_TPlot.pdf
TRINITY_DN47249_c0_g1:197	si_a334	TRINITY_DN47249_c0_g1	186	206	197	-30.70	-23.00	0.749185667752443	9.5	1-17,206-190	18-21,189-186[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCACUUGGGAUGGGGAGUGAA&UUUAUUCCUUGUCCCGAAAAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN47249_c0_g1_197_TPlot.pdf
TRINITY_DN47249_c0_g1:199	si_a332	TRINITY_DN47249_c0_g1	188	208	199	-30.60	-24.70	0.80718954248366	8	1-19,208-190	20-21,189-188[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACUUGGGAUGGGGAGUGAAGA&UUUUUAUUCCUUGUCCCGAAA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN47249_c0_g1_199_TPlot.pdf
TRINITY_DN47249_c0_g1:202	si_a329	TRINITY_DN47249_c0_g1	191	211	202	-29.60	-23.10	0.780405405405405	10	4-21,208-191	1-3,211-209[UP5]	((((((((((((((((((...&...))))))))))))))))))	UGGGAUGGGGAGUGAAGACAG&AUUUUUUUAUUCCUUGUCCCG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN47249_c0_g1_202_TPlot.pdf
TRINITY_DN4724_c0_g1:1680	si_s375	TRINITY_DN4724_c0_g1	1655	1690	1680	-44.10	-29.60	0.671201814058957	19.5	1-2,1690-1689;3-14,1687-1676;15-19,1661-1657	x-x,1688-1688[BULt];x-x,1675-1662[BULt];20-21,1656-1655[UP3]	..(((((..............((((((((((((.((&))-))))))))))))--------------)))))..	CUGGCGGCUCUCGAGGAAUCAGCACGCGAGCGGCUC&GA-UCGCUCGCGUGU--------------CCGCCUU	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN4724_c0_g1_1680_TPlot.pdf
TRINITY_DN4724_c0_g1:861	si_a495	TRINITY_DN4724_c0_g1	849	870	861	-31.90	-20.90	0.655172413793103	10	3-19,868-852;20-21,850-849	1-2,870-869[UP5];x-x,851-851[BULt]	((.(((((((((((((((((..&..)))))))))))))))))-))	GGCAAGGCGGAGGAUGAUGUCA&AUAUGUCGUUUUUCGUCUU-CC	4	0.999999999988201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4724_c0_g1_861_TPlot.pdf
TRINITY_DN47252_c0_g1:65	si_a637	TRINITY_DN47252_c0_g1	54	74	65	-25.80	-17.50	0.678294573643411	6.5	1-4,74-71;6-12,69-63;14-19,61-56	5-5,70-70[SIL];13-13,62-62[SIL];20-21,55-54[UP3]	..((((((.(((((((.((((&)))).))))))).))))))..	AGAUUGCUGAAAGAAACCGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN47252_c0_g1_65_TPlot.pdf
TRINITY_DN4725_c0_g1:394	si_a589	TRINITY_DN4725_c0_g1	381	403	394	-30.60	-20.18	0.659477124183007	8.5	3-15,401-389;18-21,384-381	1-2,403-402[UP5];16-17,388-385[AILt]	((((....(((((((((((((..&..)))))))))))))--..))))	GAAGUCACUCUGUCCUUUUUGAU&AACAAGAAGGACAGA--AUUUUC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a589_TRINITY_DN4725_c0_g1_394_TPlot.pdf
TRINITY_DN4725_c0_g1:395	si_a588	TRINITY_DN4725_c0_g1	384	404	395	-29.00	-19.90	0.686206896551724	11	4-16,401-389	1-3,404-402[UP5];17-21,388-384[UP3]	.....(((((((((((((...&...))))))))))))).....	GUCACUCUGUCCUUUUUGAUG&UAACAAGAAGGACAGAAUUUU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN4725_c0_g1_395_TPlot.pdf
TRINITY_DN4725_c0_g1:753	si_a675	TRINITY_DN4725_c0_g1	742	764	753	-34.00	-22.10	0.65	8.5	1-6,764-759;7-10,756-753;12-21,751-742	x-x,758-757[BULt];11-11,752-752[SIL]	((((((((((.((((..((((((&))))))--)))).))))))))))	AAAUCGCGUGCAUAAUUGGGGUC&GAUUCC--UUAUUCACGCGGUUU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN4725_c0_g1_753_TPlot.pdf
TRINITY_DN4726_c0_g1:119	si_s549	TRINITY_DN4726_c0_g1	109	128	119	-20.50	-16.00	0.780487804878049	3	1-14,128-115;17-21,113-109	15-16,114-114[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	AAAUGA-GAUUCUAUUUUGAU&AUCAAAAUAGAAUUAAUAUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN4726_c0_g1_119_TPlot.pdf
TRINITY_DN4726_c0_g1:120	si_s548	TRINITY_DN4726_c0_g1	110	129	120	-22.50	-18.30	0.813333333333333	3	1-15,129-115;18-21,113-110	16-17,114-114[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	AAUGA-GAUUCUAUUUUGAUC&GAUCAAAAUAGAAUUAAUAUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN4726_c0_g1_120_TPlot.pdf
TRINITY_DN4726_c0_g1:121	si_s547	TRINITY_DN4726_c0_g1	110	130	121	-24.00	-18.40	0.766666666666667	6.5	2-16,129-115	1-1,130-130[UP5];17-21,114-110[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUGAGAUUCUAUUUUGAUCC&CGAUCAAAAUAGAAUUAAUAU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN4726_c0_g1_121_TPlot.pdf
TRINITY_DN4726_c0_g1:122	si_s546	TRINITY_DN4726_c0_g1	111	131	122	-26.20	-18.40	0.702290076335878	7.5	3-17,129-115	1-2,131-130[UP5];18-21,114-111[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUGAGAUUCUAUUUUGAUCCC&CCGAUCAAAAUAGAAUUAAUA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN4726_c0_g1_122_TPlot.pdf
TRINITY_DN4726_c0_g1:3697	si_s76	TRINITY_DN4726_c0_g1	3681	3706	3697	-23.60	-16.30	0.690677966101695	16.5	3-12,3704-3695;13-21,3689-3681	1-2,3706-3705[UP5];x-x,3694-3690[BULt]	(((((((((.....((((((((((..&..))))))))))-----)))))))))	AAGGAAGGAGCUCAAAGAGAAGGAUU&AUUUUUUUUCUU-----UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4726_c0_g1_3697_TPlot.pdf
TRINITY_DN4726_c0_g1:4152	si_a72	TRINITY_DN4726_c0_g1	4141	4161	4152	-21.90	-15.60	0.712328767123288	8	3-4,4159-4158;7-21,4155-4141	1-2,4161-4160[UP5];5-6,4157-4156[SIL]	(((((((((((((((..((..&..))..)))))))))))))))	AUAAUGAAAAACGAUCAGAUC&UUUCAAAUUGUUUUUCAUUAU	2	0.999392074706159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4726_c0_g1_4152_TPlot.pdf
TRINITY_DN4726_c0_g1:6332	si_a862	TRINITY_DN4726_c0_g1	6321	6342	6332	-22.70	-16.40	0.722466960352423	6.5	1-5,6342-6338;6-20,6336-6322	x-x,6337-6337[BULt];21-21,6321-6321[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	GGAGUUUUUAAUAGUUCGGGUU&AAUCC-AAUUAUUAAAGAUUUA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN4726_c0_g1_6332_TPlot.pdf
TRINITY_DN47276_c0_g1:108	si_s75	TRINITY_DN47276_c0_g1	97	117	108	-24.00	-22.40	0.933333333333333	5	3-21,115-97	1-2,117-116[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAAGGGGAAGAAGAAAAAGA&UAUUUUUUUUCUUUCCUUUCU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN47276_c0_g1_108_TPlot.pdf
TRINITY_DN472_c0_g1:409	si_a784	TRINITY_DN472_c0_g1	398	418	409	-24.70	-16.80	0.680161943319838	9	1-6,418-413;9-20,410-399	7-8,412-411[SIL];21-21,398-398[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CGAGUGGAGAAAUUUAGGGGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999999995654792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN472_c0_g1_409_TPlot.pdf
TRINITY_DN472_c0_g1:410	si_a783	TRINITY_DN472_c0_g1	399	419	410	-24.70	-17.00	0.688259109311741	9	2-7,418-413;10-21,410-399	1-1,419-419[UP5];8-9,412-411[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	GAGUGGAGAAAUUUAGGGGUA&AACUCUUCUAUUUUUCUAUUU	4	0.999999999823709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN472_c0_g1_410_TPlot.pdf
TRINITY_DN4730_c0_g1:35	si_a321	TRINITY_DN4730_c0_g1	23	44	35	-26.70	-18.02	0.674906367041199	8	1-12,44-33;16-21,28-23	13-15,32-29[AILt]	((((((....((((((((((((&))))))))))))-...))))))	GGAAUACCCCGGAUUAUGGAUA&UAUCCAUGAUUU-UUUUAUUCC	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN4730_c0_g1_35_TPlot.pdf
TRINITY_DN4730_c0_g1:579	si_a664	TRINITY_DN4730_c0_g1	567	589	579	-29.60	-20.80	0.702702702702703	9	3-6,587-584;7-14,582-575;15-21,573-567	1-2,589-588[UP5];x-x,583-583[BULt];x-x,574-574[BULt]	(((((((.((((((((.((((..&..))))-))))))))-)))))))	AUGAGGAUGUCGAUAGAGCGUCU&AAAUGC-CUAUUGAU-UCCUUAU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN4730_c0_g1_579_TPlot.pdf
TRINITY_DN4734_c0_g1:2047	si_a600	TRINITY_DN4734_c0_g1	2032	2056	2047	-29.70	-20.70	0.696969696969697	13.5	1-10,2056-2047;11-18,2042-2035	x-x,2046-2043[BULt];19-21,2034-2032[UP3]	...((((((((....((((((((((&))))))))))----))))))))...	CCAGGAGUUGUCGAUGAAAGUUCUG&CAGAAUUUUC----GCAAUUCCAAU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN4734_c0_g1_2047_TPlot.pdf
TRINITY_DN4735_c0_g1:2632	si_s87	TRINITY_DN4735_c0_g1	2613	2641	2632	-32.90	-22.90	0.696048632218845	21	2-12,2640-2630;13-21,2621-2613	1-1,2641-2641[UP5];x-x,2629-2622[BULt]	(((((((((........(((((((((((.&.)))))))))))--------)))))))))	GGGCGGAGGAUUCGUGCAGAAGAAGGGGU&UUCCUUUCUUCU--------UCUUCGCUU	3	0.999999999997415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4735_c0_g1_2632_TPlot.pdf
TRINITY_DN4735_c0_g1:2633	si_s816	TRINITY_DN4735_c0_g1	2622	2642	2633	-24.90	-16.36	0.657028112449799	9	1-11,2642-2632;16-20,2627-2623	12-15,2631-2628[SIL];21-21,2622-2622[UP3]	.(((((....(((((((((((&)))))))))))....))))).	AUUCGUGCAGAAGAAGGGGUG&UACCUUUUCUUAAUAAUGAAA	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN4735_c0_g1_2633_TPlot.pdf
TRINITY_DN4735_c0_g1:3185	si_a785	TRINITY_DN4735_c0_g1	3174	3195	3185	-25.90	-17.40	0.671814671814672	10.5	1-9,3195-3187;12-20,3183-3175	10-11,3186-3184[AILt];21-21,3174-3174[UP3]	.(((((((((...(((((((((&)))))))))-..))))))))).	CGAAAUGGGAUGCAUGGGAGAG&CUCUUCUAU-UUUUCUAUUUUC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN4735_c0_g1_3185_TPlot.pdf
TRINITY_DN4735_c0_g1:3187	si_a784	TRINITY_DN4735_c0_g1	3175	3196	3187	-24.70	-17.60	0.712550607287449	10.5	2-10,3195-3187;13-21,3183-3175	1-1,3196-3196[UP5];11-12,3186-3184[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	GAAAUGGGAUGCAUGGGAGAGG&ACUCUUCUAU-UUUUCUAUUUU	2	0.999918040760832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4735_c0_g1_3187_TPlot.pdf
TRINITY_DN4735_c0_g1:3309	si_s53	TRINITY_DN4735_c0_g1	3298	3318	3309	-31.20	-21.70	0.69551282051282	8.5	1-6,3318-3313;8-16,3311-3303	7-7,3312-3312[SIL];17-21,3302-3298[UP3]	.....(((((((((.((((((&)))))).))))))))).....	CUCGGGCUGACUUGCGAUCCA&UGGAUUUCAAGUUAGCAACUU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN4735_c0_g1_3309_TPlot.pdf
TRINITY_DN4735_c0_g1:3310	si_s52	TRINITY_DN4735_c0_g1	3299	3319	3310	-31.30	-22.10	0.706070287539936	8	1-7,3319-3313;9-17,3311-3303	8-8,3312-3312[SIL];18-21,3302-3299[UP3]	....(((((((((.(((((((&))))))).)))))))))....	UCGGGCUGACUUGCGAUCCAG&UUGGAUUUCAAGUUAGCAACU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN4735_c0_g1_3310_TPlot.pdf
TRINITY_DN4735_c0_g1:3311	si_s51	TRINITY_DN4735_c0_g1	3300	3320	3311	-30.70	-23.40	0.762214983713355	7.5	1-8,3320-3313;10-18,3311-3303	9-9,3312-3312[SIL];19-21,3302-3300[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CGGGCUGACUUGCGAUCCAGU&AUUGGAUUUCAAGUUAGCAAC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN4735_c0_g1_3311_TPlot.pdf
TRINITY_DN4735_c0_g1:3313	si_s49	TRINITY_DN4735_c0_g1	3302	3322	3313	-29.30	-23.60	0.805460750853242	8.5	3-10,3320-3313;12-20,3311-3303	1-2,3322-3321[UP5];11-11,3312-3312[SIL];21-21,3302-3302[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	GGCUGACUUGCGAUCCAGUCG&UAAUUGGAUUUCAAGUUAGCA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN4735_c0_g1_3313_TPlot.pdf
TRINITY_DN4735_c0_g1:3314	si_s48	TRINITY_DN4735_c0_g1	3303	3323	3314	-28.80	-23.20	0.805555555555555	9.5	4-11,3320-3313;13-21,3311-3303	1-3,3323-3321[UP5];12-12,3312-3312[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GCUGACUUGCGAUCCAGUCGG&AUAAUUGGAUUUCAAGUUAGC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN4735_c0_g1_3314_TPlot.pdf
TRINITY_DN4735_c0_g1:3315	si_s47	TRINITY_DN4735_c0_g1	3304	3324	3315	-26.30	-19.90	0.756653992395437	10.5	5-12,3320-3313;14-21,3311-3304	1-4,3324-3321[UP5];13-13,3312-3312[SIL]	((((((((.((((((((....&....)))))))).))))))))	CUGACUUGCGAUCCAGUCGGA&AAUAAUUGGAUUUCAAGUUAG	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN4735_c0_g1_3315_TPlot.pdf
TRINITY_DN4735_c0_g1:3316	si_s46	TRINITY_DN4735_c0_g1	3305	3325	3316	-25.00	-16.90	0.676	12	6-13,3320-3313;15-21,3311-3305	1-5,3325-3321[UP5];14-14,3312-3312[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	UGACUUGCGAUCCAGUCGGAG&UAAUAAUUGGAUUUCAAGUUA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN4735_c0_g1_3316_TPlot.pdf
TRINITY_DN4739_c0_g2:470	si_a475	TRINITY_DN4739_c0_g2	460	479	470	-23.50	-16.00	0.680851063829787	4	1-15,479-465;17-20,464-461	16-16,x-x[BULq];21-21,460-460[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	AUCUA-AUAAUGAUAAUUACA&UGUAAUUAUUGUUAUAUAGAA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN4739_c0_g2_470_TPlot.pdf
TRINITY_DN4739_c0_g2:471	si_a474	TRINITY_DN4739_c0_g2	461	480	471	-23.60	-15.80	0.669491525423729	4	2-16,479-465;18-21,464-461	1-1,480-480[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	UCUA-AUAAUGAUAAUUACAA&AUGUAAUUAUUGUUAUAUAGA	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN4739_c0_g2_471_TPlot.pdf
TRINITY_DN473_c0_g1:2055	si_s840	TRINITY_DN473_c0_g1	2043	2064	2055	-32.20	-21.50	0.667701863354037	7	2-4,2063-2061;6-11,2059-2054;12-19,2052-2045	1-1,2064-2064[UP5];5-5,2060-2060[SIL];x-x,2053-2053[BULt];20-21,2044-2043[UP3]	..((((((((.((((((.(((.&.))).))))))-))))))))..	UAGACUCGCUCUCUUUCCAAUG&AAUUUGAAAGA-AGCGAGUCGA	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s840_TRINITY_DN473_c0_g1_2055_TPlot.pdf
TRINITY_DN473_c0_g1:2056	si_s839	TRINITY_DN473_c0_g1	2044	2065	2056	-32.90	-21.50	0.653495440729483	8	3-5,2063-2061;7-12,2059-2054;13-20,2052-2045	1-2,2065-2064[UP5];6-6,2060-2060[SIL];x-x,2053-2053[BULt];21-21,2044-2044[UP3]	.((((((((.((((((.(((..&..))).))))))-)))))))).	AGACUCGCUCUCUUUCCAAUGA&CAAUUUGAAAGA-AGCGAGUCG	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s839_TRINITY_DN473_c0_g1_2056_TPlot.pdf
TRINITY_DN473_c0_g1:2057	si_s838	TRINITY_DN473_c0_g1	2045	2066	2057	-32.20	-21.10	0.65527950310559	8	4-6,2063-2061;8-13,2059-2054;14-21,2052-2045	1-3,2066-2064[UP5];7-7,2060-2060[SIL];x-x,2053-2053[BULt]	((((((((.((((((.(((...&...))).))))))-))))))))	GACUCGCUCUCUUUCCAAUGAU&ACAAUUUGAAAGA-AGCGAGUC	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s838_TRINITY_DN473_c0_g1_2057_TPlot.pdf
TRINITY_DN473_c0_g1:2237	si_a477	TRINITY_DN473_c0_g1	2225	2246	2237	-21.50	-15.20	0.706976744186047	10.5	4-15,2243-2232;16-20,2230-2226	1-3,2246-2244[UP5];x-x,2231-2231[BULt];21-21,2225-2225[UP3]	.(((((.((((((((((((...&...))))))))))))-))))).	CGUUCUGGUGUGACAAUGAAGU&UAAUUAUUGUUAUAU-AGAAUA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN473_c0_g1_2237_TPlot.pdf
TRINITY_DN4741_c0_g1:2890	si_s894	TRINITY_DN4741_c0_g1	2879	2899	2890	-29.10	-21.60	0.742268041237113	13.5	5-16,2895-2884	1-4,2899-2896[UP5];17-21,2883-2879[UP3]	.....((((((((((((....&....)))))))))))).....	GUGCAGAGGAGAGAGCCACGG&AAUAGGCUUUCUCUUCAAUUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4741_c0_g1_2890_TPlot.pdf
TRINITY_DN4741_c0_g1:2894	si_s890	TRINITY_DN4741_c0_g1	2883	2903	2894	-29.50	-21.60	0.732203389830508	17	9-20,2895-2884	1-8,2903-2896[UP5];21-21,2883-2883[UP3]	.((((((((((((........&........)))))))))))).	AGAGGAGAGAGCCACGGCUUU&AAUAAAUAGGCUUUCUCUUCA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4741_c0_g1_2894_TPlot.pdf
TRINITY_DN4741_c0_g1:2895	si_s889	TRINITY_DN4741_c0_g1	2884	2904	2895	-28.80	-21.10	0.732638888888889	18	10-21,2895-2884	1-9,2904-2896[UP5]	((((((((((((.........&.........))))))))))))	GAGGAGAGAGCCACGGCUUUU&AAAUAAAUAGGCUUUCUCUUC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN4741_c0_g1_2895_TPlot.pdf
TRINITY_DN4741_c0_g1:3033	si_a444	TRINITY_DN4741_c0_g1	3022	3042	3033	-29.30	-19.60	0.668941979522184	10	1-11,3042-3032;14-19,3029-3024	12-13,3031-3030[SIL];20-21,3023-3022[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	AUCGACGAGGGUCUUGUGUCC&GGAUAUGAGAUAAUUGUUGUU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN4741_c0_g1_3033_TPlot.pdf
TRINITY_DN4741_c0_g1:3034	si_a443	TRINITY_DN4741_c0_g1	3023	3043	3034	-30.00	-19.60	0.653333333333333	9	2-12,3042-3032;15-20,3029-3024	1-1,3043-3043[UP5];13-14,3031-3030[SIL];21-21,3023-3023[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	UCGACGAGGGUCUUGUGUCCC&UGGAUAUGAGAUAAUUGUUGU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN4741_c0_g1_3034_TPlot.pdf
TRINITY_DN4741_c0_g1:3678	si_a510	TRINITY_DN4741_c0_g1	3663	3687	3678	-37.00	-24.20	0.654054054054054	9	1-10,3687-3678;13-16,3675-3672;17-21,3667-3663	11-12,3677-3676[SIL];x-x,3671-3668[BULt]	(((((....((((..((((((((((&))))))))))..))))----)))))	CGUCUUGGGUGCACACCAAGGAAGA&UCUUCCUUGGAAUGUA----AGGCG	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN4741_c0_g1_3678_TPlot.pdf
TRINITY_DN4741_c0_g1:3683	si_a505	TRINITY_DN4741_c0_g1	3672	3692	3683	-33.30	-22.50	0.675675675675676	8.5	4-15,3689-3678;18-21,3675-3672	1-3,3692-3690[UP5];16-17,3677-3676[SIL]	((((..((((((((((((...&...))))))))))))..))))	UGCACACCAAGGAAGAUGCAU&UUUCGUCUUCCUUGGAAUGUA	4	0.999639012009468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN4741_c0_g1_3683_TPlot.pdf
TRINITY_DN4741_c0_g1:4577	si_s792	TRINITY_DN4741_c0_g1	4566	4586	4577	-28.50	-18.70	0.656140350877193	9.5	2-3,4585-4584;6-16,4581-4571;18-21,4569-4566	1-1,4586-4586[UP5];4-5,4583-4582[SIL];17-17,4570-4570[SIL]	((((.(((((((((((..((.&.))..))))))))))).))))	GAGGAGGAGUACGGGCGGGUC&AACAAGCUCGUAUUUUAUCUU	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN4741_c0_g1_4577_TPlot.pdf
TRINITY_DN4741_c0_g1:5369	si_a328	TRINITY_DN4741_c0_g1	5358	5378	5369	-30.10	-19.66	0.653156146179402	14	1-2,5378-5377;4-7,5375-5372;12-21,5367-5358	3-3,5376-5376[SIL];8-11,5371-5368[SIL]	((((((((((....((((.((&)).))))....))))))))))	GGGACAAGGGUCCUGGAGCUC&GAUUUUUUUAUUCCUUGUCCC	4	0.999999993467485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4741_c0_g1_5369_TPlot.pdf
TRINITY_DN4741_c0_g1:5497	si_a589	TRINITY_DN4741_c0_g1	5487	5506	5497	-30.60	-21.00	0.686274509803922	7	3-14,5504-5493;17-21,5491-5487	1-2,5506-5505[UP5];15-16,5492-5492[AILq]	(((((.-((((((((((((..&..))))))))))))..)))))	GAGGAG-CUGUCCUUUUUGAU&AACAAGAAGGACAGAAUUUUC	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a589_TRINITY_DN4741_c0_g1_5497_TPlot.pdf
TRINITY_DN4741_c0_g1:5954	si_a758	TRINITY_DN4741_c0_g1	5941	5964	5954	-34.00	-22.90	0.673529411764706	9	1-6,5964-5959;7-8,5957-5956;10-16,5954-5948;17-21,5945-5941	x-x,5958-5958[BULt];9-9,5955-5955[SIL];x-x,5947-5946[BULt]	(((((..(((((((.((.((((((&))))))-)).)))))))--)))))	CAGUCCCGAAAGCCGAGCAGGAGG&CCUCCU-UUGGGUUUUU--GAUUG	3	0.999979807954259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN4741_c0_g1_5954_TPlot.pdf
TRINITY_DN4741_c0_g1:5955	si_a757	TRINITY_DN4741_c0_g1	5944	5965	5955	-33.10	-22.10	0.667673716012085	10	2-7,5964-5959;8-9,5957-5956;11-18,5954-5947	1-1,5965-5965[UP5];x-x,5958-5958[BULt];10-10,5955-5955[SIL];19-21,5946-5944[UP3]	...((((((((.((.((((((.&.))))))-)).))))))))...	UCCCGAAAGCCGAGCAGGAGGC&ACCUCCU-UUGGGUUUUUGAUU	2	0.999972588546334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4741_c0_g1_5955_TPlot.pdf
TRINITY_DN4741_c0_g1:789	si_a172	TRINITY_DN4741_c0_g1	778	799	789	-31.90	-20.90	0.655172413793103	10	1-7,799-793;8-14,791-785	x-x,792-792[BULt];15-21,784-778[UP3]	.......(((((((.(((((((&)))))))-))))))).......	GGUCAUCCUAGACGAGGUGGAU&AUUCACC-CGUCUAGAUAAUAU	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN4741_c0_g1_789_TPlot.pdf
TRINITY_DN4741_c0_g1:790	si_a171	TRINITY_DN4741_c0_g1	779	800	790	-32.10	-20.90	0.651090342679128	10	2-8,799-793;9-15,791-785	1-1,800-800[UP5];x-x,792-792[BULt];16-21,784-779[UP3]	......(((((((.(((((((.&.)))))))-)))))))......	GUCAUCCUAGACGAGGUGGAUC&UAUUCACC-CGUCUAGAUAAUA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN4741_c0_g1_790_TPlot.pdf
TRINITY_DN4741_c0_g1:798	si_a164	TRINITY_DN4741_c0_g1	786	807	798	-35.60	-24.90	0.699438202247191	6	1-4,807-804;6-8,803-801;9-15,799-793;16-21,791-786	5-5,x-x[BULq];x-x,800-800[BULt];x-x,792-792[BULt]	((((((.(((((((.(((-((((&)))).)))-)))))))-))))))	UAGACGAGGUGGAUCAGA-UGAC&GUCAAUCU-AUUCACC-CGUCUA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a164_TRINITY_DN4741_c0_g1_798_TPlot.pdf
TRINITY_DN4742_c0_g1:3596	si_a353	TRINITY_DN4742_c0_g1	3585	3605	3596	-24.00	-16.20	0.675	6	1-3,3605-3603;5-16,3601-3590;18-20,3588-3586	4-4,3602-3602[SIL];17-17,3589-3589[SIL];21-21,3585-3585[UP3]	.(((.((((((((((((.(((&))).)))))))))))).))).	AGAUGAGGAUAGAAUUAUUGU&AUAUUAAUUCUAUUUUGAUCG	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN4742_c0_g1_3596_TPlot.pdf
TRINITY_DN4742_c0_g1:3597	si_a352	TRINITY_DN4742_c0_g1	3586	3606	3597	-22.50	-17.00	0.755555555555556	5	1-4,3606-3603;6-17,3601-3590;19-21,3588-3586	5-5,3602-3602[SIL];18-18,3589-3589[SIL]	(((.((((((((((((.((((&)))).)))))))))))).)))	GAUGAGGAUAGAAUUAUUGUU&AAUAUUAAUUCUAUUUUGAUC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN4742_c0_g1_3597_TPlot.pdf
TRINITY_DN4742_c0_g1:3598	si_a351	TRINITY_DN4742_c0_g1	3587	3607	3598	-20.50	-14.00	0.682926829268293	6	2-5,3606-3603;7-18,3601-3590;20-21,3588-3587	1-1,3607-3607[UP5];6-6,3602-3602[SIL];19-19,3589-3589[SIL]	((.((((((((((((.((((.&.)))).)))))))))))).))	AUGAGGAUAGAAUUAUUGUUA&AAAUAUUAAUUCUAUUUUGAU	2	0.997046598298336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN4742_c0_g1_3598_TPlot.pdf
TRINITY_DN4742_c0_g1:3611	si_a125	TRINITY_DN4742_c0_g1	3597	3620	3611	-25.00	-16.90	0.676	11	2-11,3619-3610;12-21,3606-3597	1-1,3620-3620[UP5];x-x,3609-3607[BULt]	((((((((((...((((((((((.&.))))))))))---))))))))))	AAUUAUUGUUAUAGCUGUAGAGCC&UGUUUUAUAGC---AAUAGUAAUU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN4742_c0_g1_3611_TPlot.pdf
TRINITY_DN4744_c0_g2:909	si_s79	TRINITY_DN4744_c0_g2	898	918	909	-26.20	-17.20	0.656488549618321	6	1-13,918-906;15-18,904-901	14-14,905-905[SIL];19-21,900-898[UP3]	...((((.(((((((((((((&))))))))))))).))))...	ACAAAGGCAGGAAAGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4744_c0_g2_909_TPlot.pdf
TRINITY_DN4744_c0_g2:911	si_s77	TRINITY_DN4744_c0_g2	900	920	911	-25.50	-17.30	0.67843137254902	7.5	3-15,918-906;17-20,904-901	1-2,920-919[UP5];16-16,905-905[SIL];21-21,900-900[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	AAAGGCAGGAAAGAAGAAGCG&UUUUUUUUCUUUCCUUUCUUC	1	0.633792788410292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4744_c0_g2_911_TPlot.pdf
TRINITY_DN4746_c0_g1:1288	si_a271	TRINITY_DN4746_c0_g1	1277	1297	1288	-34.60	-22.98	0.664161849710983	6	1-8,1297-1290;10-13,1288-1285;17-21,1281-1277	9-9,1289-1289[SIL];14-16,1284-1282[SIL]	(((((...((((.((((((((&)))))))).))))...)))))	UGGUCGUCUCGUUGGCGUUUG&CAAACGCCUACGAAAAGAUCG	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a271_TRINITY_DN4746_c0_g1_1288_TPlot.pdf
TRINITY_DN4746_c0_g1:1497	si_a318	TRINITY_DN4746_c0_g1	1486	1506	1497	-22.50	-15.70	0.697777777777778	11.5	5-18,1502-1489	1-4,1506-1503[UP5];19-21,1488-1486[UP3]	...((((((((((((((....&....))))))))))))))...	GCCAAAAAGUCGUGGAUUGUU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999933027961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4746_c0_g1_1497_TPlot.pdf
TRINITY_DN4746_c0_g1:1798	si_a531	TRINITY_DN4746_c0_g1	1787	1807	1798	-42.00	-29.40	0.7	8	1-2,1807-1806;5-20,1803-1788	3-4,1805-1804[SIL];21-21,1787-1787[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	GGGAUCGAUCGUUCGUGGAUC&GACACGCGAGCGAUCGGUUCA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a531_TRINITY_DN4746_c0_g1_1798_TPlot.pdf
TRINITY_DN4746_c0_g1:2237	si_s367	TRINITY_DN4746_c0_g1	2226	2248	2237	-39.40	-27.10	0.687817258883249	11	1-4,2248-2245;6-7,2242-2241;8-20,2239-2227	5-5,2244-2243[AILt];x-x,2240-2240[BULt];21-21,2226-2226[UP3]	.(((((((((((((.((..((((&))))-.))-))))))))))))).	AGCGCGGGCGGUCGCGUGACGGU&AUUG-AAC-CGAUCGCUCGCGUG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN4746_c0_g1_2237_TPlot.pdf
TRINITY_DN4746_c0_g1:2239	si_s365	TRINITY_DN4746_c0_g1	2228	2250	2239	-39.60	-26.10	0.659090909090909	12	3-6,2248-2245;8-9,2242-2241;10-21,2239-2228	1-2,2250-2249[UP5];7-7,2244-2243[AILt];x-x,2240-2240[BULt]	((((((((((((.((..((((..&..))))-.))-))))))))))))	CGCGGGCGGUCGCGUGACGGUGG&AGAUUG-AAC-CGAUCGCUCGCG	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s365_TRINITY_DN4746_c0_g1_2239_TPlot.pdf
TRINITY_DN4746_c0_g1:876	si_s248	TRINITY_DN4746_c0_g1	865	885	876	-31.90	-22.00	0.689655172413793	8.5	2-12,884-874;14-15,872-871	1-1,885-885[UP5];13-13,873-873[SIL];16-21,870-865[UP3]	......((.(((((((((((.&.))))))))))).))......	UUCAAAGUGGGGAAAUGCCUC&UAGGCAUUUCCCGAUAUAUUA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN4746_c0_g1_876_TPlot.pdf
TRINITY_DN4746_c0_g1:877	si_s247	TRINITY_DN4746_c0_g1	866	886	877	-31.70	-22.00	0.694006309148265	9.5	3-13,884-874;15-16,872-871	1-2,886-885[UP5];14-14,873-873[SIL];17-21,870-866[UP3]	.....((.(((((((((((..&..))))))))))).)).....	UCAAAGUGGGGAAAUGCCUCA&AUAGGCAUUUCCCGAUAUAUU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN4746_c0_g1_877_TPlot.pdf
TRINITY_DN4747_c0_g2:232	si_a328	TRINITY_DN4747_c0_g2	221	242	232	-30.10	-20.80	0.691029900332226	12	1-8,242-235;11-14,231-228;16-21,226-221	9-10,234-232[AILt];15-15,227-227[SIL]	((((((.((((...((((((((&))))))))-..)))).))))))	GGGACAUGGAGAGCGGAGAGUC&GAUUUUUU-UAUUCCUUGUCCC	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4747_c0_g2_232_TPlot.pdf
TRINITY_DN4748_c0_g1:1487	si_a549	TRINITY_DN4748_c0_g1	1476	1496	1487	-29.50	-19.68	0.667118644067797	9	1-2,1496-1495;6-20,1491-1477	3-5,1494-1492[SIL];21-21,1476-1476[UP3]	.(((((((((((((((...((&))...))))))))))))))).	AGAGAUGAGGAGAUAGUAAGA&UCAAUCUAUUUCUUUAUCUCC	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN4748_c0_g1_1487_TPlot.pdf
TRINITY_DN4748_c0_g1:1798	si_s76	TRINITY_DN4748_c0_g1	1787	1807	1798	-23.60	-18.20	0.771186440677966	11	1-8,1807-1800;10-19,1798-1789	9-9,1799-1799[SIL];20-21,1788-1787[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AUGGAGGGAGGGUGAGAGAGU&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999995042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4748_c0_g1_1798_TPlot.pdf
TRINITY_DN4748_c0_g1:1799	si_s75	TRINITY_DN4748_c0_g1	1788	1808	1799	-24.00	-19.50	0.8125	9.5	1-9,1808-1800;11-20,1798-1789	10-10,1799-1799[SIL];21-21,1788-1788[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UGGAGGGAGGGUGAGAGAGUA&UAUUUUUUUUCUUUCCUUUCU	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4748_c0_g1_1799_TPlot.pdf
TRINITY_DN4748_c0_g1:1803	si_s71	TRINITY_DN4748_c0_g1	1792	1813	1803	-25.70	-19.70	0.766536964980545	8	1-5,1813-1809;6-13,1807-1800;15-21,1798-1792	x-x,1808-1808[BULt];14-14,1799-1799[SIL]	(((((((.((((((((.(((((&)))))-)))))))).)))))))	GGGAGGGUGAGAGAGUAAGAAG&CUUCU-AUUUUUUUUCUUUCCU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4748_c0_g1_1803_TPlot.pdf
TRINITY_DN4748_c0_g1:1804	si_s70	TRINITY_DN4748_c0_g1	1793	1814	1804	-25.80	-18.80	0.728682170542636	8.5	2-6,1813-1809;7-14,1807-1800;16-21,1798-1793	1-1,1814-1814[UP5];x-x,1808-1808[BULt];15-15,1799-1799[SIL]	((((((.((((((((.(((((.&.)))))-)))))))).))))))	GGAGGGUGAGAGAGUAAGAAGG&ACUUCU-AUUUUUUUUCUUUCC	4	0.999999423956054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4748_c0_g1_1804_TPlot.pdf
TRINITY_DN4748_c0_g1:1805	si_s69	TRINITY_DN4748_c0_g1	1794	1815	1805	-23.40	-15.50	0.662393162393162	10	3-7,1813-1809;8-15,1807-1800;17-21,1798-1794	1-2,1815-1814[UP5];x-x,1808-1808[BULt];16-16,1799-1799[SIL]	(((((.((((((((.(((((..&..)))))-)))))))).)))))	GAGGGUGAGAGAGUAAGAAGGG&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4748_c0_g1_1805_TPlot.pdf
TRINITY_DN4749_c1_g2:1719	si_s200	TRINITY_DN4749_c1_g2	1708	1726	1719	-32.80	-21.60	0.658536585365854	9	3-6,1724-1721;9-20,1720-1709	1-2,1726-1725[UP5];7-8,x-x[BULq];21-21,1708-1708[UP3]	.((((((((((((--((((..&..))))..)))))))))))).	AACGGCUGGUACA--CCAACG&UUUUGGAAUGUACCAGUUGUG	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN4749_c1_g2_1719_TPlot.pdf
TRINITY_DN4749_c1_g2:2213	si_a399	TRINITY_DN4749_c1_g2	2202	2223	2213	-22.60	-15.50	0.685840707964602	5	2-7,2222-2217;8-21,2215-2202	1-1,2223-2223[UP5];x-x,2216-2216[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	GUAAAUAAAAUAAUAUCUAUAA&AUAUAGA-AUUGUUUUGUUUAU	2	0.999625851716806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN4749_c1_g2_2213_TPlot.pdf
TRINITY_DN4749_c1_g4:1100	si_a77	TRINITY_DN4749_c1_g4	1089	1109	1100	-22.20	-15.10	0.68018018018018	10	1-16,1109-1094	17-21,1093-1089[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAAUUGUGAUGGAAGGCAGUU&AAUUGUUUUUCAUUAUUAAGA	3	0.999993094182893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN4749_c1_g4_1100_TPlot.pdf
TRINITY_DN4749_c1_g4:1103	si_a74	TRINITY_DN4749_c1_g4	1092	1112	1103	-22.20	-16.10	0.725225225225225	9.5	3-19,1110-1094	1-2,1112-1111[UP5];20-21,1093-1092[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UUGUGAUGGAAGGCAGUUUUU&UCAAAUUGUUUUUCAUUAUUA	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4749_c1_g4_1103_TPlot.pdf
TRINITY_DN4749_c1_g4:1104	si_a73	TRINITY_DN4749_c1_g4	1093	1113	1104	-21.90	-16.10	0.735159817351598	10.5	4-20,1110-1094	1-3,1113-1111[UP5];21-21,1093-1093[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGUGAUGGAAGGCAGUUUUUU&UUCAAAUUGUUUUUCAUUAUU	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN4749_c1_g4_1104_TPlot.pdf
TRINITY_DN4749_c1_g4:1105	si_a72	TRINITY_DN4749_c1_g4	1094	1114	1105	-21.90	-16.10	0.735159817351598	11.5	5-21,1110-1094	1-4,1114-1111[UP5]	(((((((((((((((((....&....)))))))))))))))))	GUGAUGGAAGGCAGUUUUUUU&UUUCAAAUUGUUUUUCAUUAU	4	0.999745850014447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4749_c1_g4_1105_TPlot.pdf
TRINITY_DN4749_c1_g4:235	si_s71	TRINITY_DN4749_c1_g4	224	243	235	-25.70	-17.60	0.684824902723736	6.5	1-4,243-240;6-19,239-226	5-5,x-x[BULq];20-21,225-224[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	AAGAAGGAAAGAAAAU-GAGG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4749_c1_g4_235_TPlot.pdf
TRINITY_DN4749_c1_g4:236	si_s70	TRINITY_DN4749_c1_g4	225	244	236	-25.80	-17.80	0.689922480620155	6.5	2-5,243-240;7-20,239-226	1-1,244-244[UP5];6-6,x-x[BULq];21-21,225-225[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	AGAAGGAAAGAAAAU-GAGGG&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4749_c1_g4_236_TPlot.pdf
TRINITY_DN4749_c1_g4:636	si_a486	TRINITY_DN4749_c1_g4	625	645	636	-24.90	-16.50	0.662650602409639	13.5	7-21,639-625	1-6,645-640[UP5]	(((((((((((((((......&......)))))))))))))))	GAAACGAUGUGUUCUUUUAUU&UUAUAUAGAAUAUGUCGUUUU	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN4749_c1_g4_636_TPlot.pdf
TRINITY_DN474_c0_g1:1058	si_a767	TRINITY_DN474_c0_g1	1046	1066	1058	-30.10	-19.90	0.661129568106312	6	1-6,1066-1061;8-10,1060-1058;12-16,1056-1052;17-21,1050-1046	7-7,x-x[BULq];11-11,1057-1057[SIL];x-x,1051-1051[BULt]	(((((.(((((.(((-((((((&)))))).))).)))))-)))))	GAGUUGGAAUCUAUC-AAAGCC&GGUUUUUGAUUGAUUC-AACUC	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN474_c0_g1_1058_TPlot.pdf
TRINITY_DN4750_c0_g1:1077	si_a664	TRINITY_DN4750_c0_g1	1066	1091	1077	-29.60	-19.30	0.652027027027027	15	2-7,1090-1085;8-19,1079-1068	1-1,1091-1091[UP5];x-x,1084-1080[BULt];20-21,1067-1066[UP3]	..((((((((((((.....((((((.&.))))))-----))))))))))))..	ACGAGGGAUUAAUAGUUGUGGCAUUG&AAAUGCC-----UAUUGAUUCCUUAU	2	0.999414355145247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN4750_c0_g1_1077_TPlot.pdf
TRINITY_DN4750_c0_g1:1147	si_a478	TRINITY_DN4750_c0_g1	1136	1156	1147	-21.30	-14.50	0.68075117370892	7	3-19,1154-1138	1-2,1156-1155[UP5];20-21,1137-1136[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAGUUUUAUAUAAUAAUAAAU&AAUUAUUGUUAUAUAGAAUAU	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN4750_c0_g1_1147_TPlot.pdf
TRINITY_DN4750_c0_g1:1148	si_a477	TRINITY_DN4750_c0_g1	1137	1157	1148	-21.50	-14.50	0.674418604651163	8	4-20,1154-1138	1-3,1157-1155[UP5];21-21,1137-1137[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGUUUUAUAUAAUAAUAAAUC&UAAUUAUUGUUAUAUAGAAUA	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN4750_c0_g1_1148_TPlot.pdf
TRINITY_DN47519_c0_g1:103	si_a792	TRINITY_DN47519_c0_g1	91	112	103	-27.60	-18.40	0.666666666666667	7.5	2-12,111-101;13-19,99-93	1-1,112-112[UP5];x-x,100-100[BULt];20-21,92-91[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	CAGAUUGGGCAAGUAGAAGAAG&AUUUUUCUAUUU-UCCAAUCCG	4	0.999995989923084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN47519_c0_g1_103_TPlot.pdf
TRINITY_DN47519_c0_g1:116	si_s81	TRINITY_DN47519_c0_g1	105	126	116	-28.90	-18.80	0.650519031141869	7	1-6,126-121;8-9,118-117;11-21,115-105	7-7,120-119[AILt];10-10,116-116[SIL]	(((((((((((.((..((((((&))))))-.)).)))))))))))	AGAAGAAGAAAAGAUCAGAGAA&UUUUCU-UUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN47519_c0_g1_116_TPlot.pdf
TRINITY_DN47519_c0_g1:135	si_s79	TRINITY_DN47519_c0_g1	122	145	135	-26.20	-17.10	0.652671755725191	9.5	3-9,143-137;10-14,135-131;15-21,128-122	1-2,145-144[UP5];x-x,136-136[BULt];x-x,130-129[BULt]	(((((((..(((((.(((((((..&..)))))))-)))))--)))))))	GAGAAGAUGAAGGACAAGGAGAUA&UUUUUUCUU-UCCUU--UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN47519_c0_g1_135_TPlot.pdf
TRINITY_DN47519_c0_g1:83	si_s80	TRINITY_DN47519_c0_g1	72	91	83	-28.20	-23.00	0.815602836879433	6	2-8,90-84;10-21,83-72	1-1,91-91[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	GAGGAGGAAAGG-AGGAAAGC&UUUUUCUUUCCUUUCUUCUUC	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN47519_c0_g1_83_TPlot.pdf
TRINITY_DN4752_c0_g1:1489	si_s74	TRINITY_DN4752_c0_g1	1477	1497	1489	-25.00	-18.60	0.744	8	1-2,1497-1496;4-16,1495-1483;17-21,1481-1477	3-3,x-x[BULq];x-x,1482-1482[BULt]	(((((.(((((((((((((-((&)).)))))))))))))-)))))	GAGAGAGAGAGAGAGAGAG-AG&CUAUUUUUUUUCUUUC-CUUUC	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4752_c0_g1_1489_TPlot.pdf
TRINITY_DN4752_c0_g1:1490	si_s77	TRINITY_DN4752_c0_g1	1478	1499	1490	-25.50	-21.10	0.827450980392157	7	1-13,1499-1487;14-20,1485-1479	x-x,1486-1486[BULt];21-21,1478-1478[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	AGAGAGAGAGAGAGAGAGAGAA&UUUUUUUUCUUUC-CUUUCUUC	4	0.999497737729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4752_c0_g1_1490_TPlot.pdf
TRINITY_DN4753_c0_g1:1229	si_a451	TRINITY_DN4753_c0_g1	1219	1238	1229	-23.60	-15.40	0.652542372881356	6.5	1-12,1238-1227;15-21,1225-1219	13-14,1226-1226[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	UAUGUAUU-CGAUGAUUGUCU&AGAUAAUUGUUGUUAUAUAUA	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN4753_c0_g1_1229_TPlot.pdf
TRINITY_DN4756_c0_g1:1871	si_a595	TRINITY_DN4756_c0_g1	1860	1880	1871	-30.30	-21.10	0.696369636963696	8	3-15,1878-1866;17-18,1864-1863	1-2,1880-1879[UP5];16-16,1865-1865[SIL];19-21,1862-1860[UP3]	...((.(((((((((((((..&..))))))))))))).))...	UACUGGGAAAAUUUUGUCCGA&AAGGACAGAAUUUUCGCAAUU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN4756_c0_g1_1871_TPlot.pdf
TRINITY_DN4756_c0_g1:5490	si_s410	TRINITY_DN4756_c0_g1	5479	5499	5490	-28.10	-18.40	0.654804270462633	8	3-15,5497-5485;18-18,5482-5482	1-2,5499-5498[UP5];16-17,5484-5483[SIL];19-21,5481-5479[UP3]	...(..(((((((((((((..&..)))))))))))))..)...	GUCGUUUAUGUCGUUUUUCUU&ACGAAAAACGACAUAUUCUAU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s410_TRINITY_DN4756_c0_g1_5490_TPlot.pdf
TRINITY_DN4756_c0_g1:5686	si_s550	TRINITY_DN4756_c0_g1	5675	5695	5686	-20.30	-14.70	0.724137931034483	9.5	5-20,5691-5676	1-4,5695-5692[UP5];21-21,5675-5675[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAAUAUUGAUUCUGUUAGUU&UCAAAAUAGAAUUAAUAUUUU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN4756_c0_g1_5686_TPlot.pdf
TRINITY_DN4756_c0_g1:6367	si_a488	TRINITY_DN4756_c0_g1	6356	6376	6367	-26.40	-17.70	0.670454545454545	7	1-5,6376-6372;8-20,6369-6357	6-7,6371-6370[SIL];21-21,6356-6356[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	CAAAAACGACAUGUAAUAUGU&AUAUAGAAUAUGUCGUUUUUC	2	0.942165400938476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN4756_c0_g1_6367_TPlot.pdf
TRINITY_DN47578_c0_g1:82	si_a459	TRINITY_DN47578_c0_g1	70	92	82	-23.20	-16.00	0.689655172413793	6.5	1-8,92-85;9-17,83-75;18-19,73-72	x-x,84-84[BULt];x-x,74-74[BULt];20-21,71-70[UP3]	..((.(((((((((.((((((((&))))))))-)))))))))-))..	AAGCAAUAUUGUAUAAUAACAAC&GUUGUUAU-AUAUAAUAU-GUAA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN47578_c0_g1_82_TPlot.pdf
TRINITY_DN4757_c0_g1:1612	si_a869	TRINITY_DN4757_c0_g1	1601	1621	1612	-24.80	-17.10	0.689516129032258	14	7-19,1615-1603	1-6,1621-1616[UP5];20-21,1602-1601[UP3]	..(((((((((((((......&......)))))))))))))..	GAGCGGCUAAAUCUUCAAGAA&UUAUUAAAGAUUUAGUUGCAA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN4757_c0_g1_1612_TPlot.pdf
TRINITY_DN4757_c0_g1:1614	si_a867	TRINITY_DN4757_c0_g1	1603	1623	1614	-24.10	-16.60	0.688796680497925	16	9-21,1615-1603	1-8,1623-1616[UP5]	(((((((((((((........&........)))))))))))))	GCGGCUAAAUCUUCAAGAAAU&AAUUAUUAAAGAUUUAGUUGC	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN4757_c0_g1_1614_TPlot.pdf
TRINITY_DN4757_c0_g1:1686	si_a139	TRINITY_DN4757_c0_g1	1675	1696	1686	-25.90	-16.90	0.652509652509653	8	1-4,1696-1693;6-15,1690-1681;17-20,1679-1676	5-5,1692-1691[AILt];16-16,1680-1680[SIL];21-21,1675-1675[UP3]	.((((.((((((((((..((((&))))-.)))))))))).)))).	UGACAUCGACGAUUGACGUACU&AGUA-AUUAAUCGUUGUUGUUU	2	0.999469858280925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN4757_c0_g1_1686_TPlot.pdf
TRINITY_DN4757_c0_g1:1688	si_a137	TRINITY_DN4757_c0_g1	1677	1698	1688	-26.50	-17.90	0.675471698113208	6.5	1-6,1698-1693;8-17,1690-1681;19-21,1679-1677	7-7,1692-1691[AILt];18-18,1680-1680[SIL]	(((.((((((((((..((((((&))))))-.)))))))))).)))	ACAUCGACGAUUGACGUACUAU&AUAGUA-AUUAAUCGUUGUUGU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN4757_c0_g1_1688_TPlot.pdf
TRINITY_DN4757_c0_g1:1985	si_a792	TRINITY_DN4757_c0_g1	1974	1994	1985	-27.60	-19.20	0.695652173913043	8.5	3-12,1992-1983;14-20,1981-1975	1-2,1994-1993[UP5];13-13,1982-1982[SIL];21-21,1974-1974[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	GGGGUUGGUAAAUAGAGGGUA&AUUUUUCUAUUUUCCAAUCCG	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN4757_c0_g1_1985_TPlot.pdf
TRINITY_DN4757_c0_g1:962	si_a410	TRINITY_DN4757_c0_g1	951	971	962	-17.80	-12.30	0.691011235955056	9	1-14,971-958	15-21,957-951[UP3]	.......((((((((((((((&)))))))))))))).......	UUUUUGGAAGUAUGAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999990721386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4757_c0_g1_962_TPlot.pdf
TRINITY_DN4757_c0_g1:966	si_a406	TRINITY_DN4757_c0_g1	955	975	966	-19.80	-14.30	0.722222222222222	8.5	2-3,974-973;5-18,971-958	1-1,975-975[UP5];4-4,972-972[SIL];19-21,957-955[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	UGGAAGUAUGAACAAAAGGAG&AUUGUUUUGUUUAUAUUUAAA	4	0.999999951619305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4757_c0_g1_966_TPlot.pdf
TRINITY_DN47589_c0_g1:202	si_a502	TRINITY_DN47589_c0_g1	190	211	202	-32.10	-21.70	0.67601246105919	5.5	1-7,211-205;9-12,203-200;13-20,198-191	8-8,204-204[SIL];x-x,199-199[BULt];21-21,190-190[UP3]	.((((((((.((((.(((((((&))))))).))))-)))))))).	UUUCCAAGGUAAGAAGAAAAAU&GUUUUUCGUCUU-CCUUGGAAU	4	0.999999999379008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN47589_c0_g1_202_TPlot.pdf
TRINITY_DN4758_c0_g1:508	si_s84	TRINITY_DN4758_c0_g1	497	525	508	-32.30	-22.20	0.687306501547988	22	3-9,523-517;10-21,508-497	1-2,525-524[UP5];x-x,516-509[BULt]	((((((((((((........(((((((..&..)))))))--------))))))))))))	CGAAGAAGAGGAACAUGACAGAGGAGAUA&UCUUUCCUU--------UCUUCUUCUUCG	4	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4758_c0_g1_508_TPlot.pdf
TRINITY_DN47595_c0_g1:58	si_a504	TRINITY_DN47595_c0_g1	46	67	58	-32.90	-21.80	0.662613981762918	6	1-5,67-63;7-13,61-55;14-17,53-50;19-20,48-47	6-6,62-62[SIL];x-x,54-54[BULt];18-18,49-49[SIL];21-21,46-46[UP3]	.((.((((.(((((((.(((((&))))).)))))))-)))).)).	UCACUCCAGAGGAAGAGGAAGA&UUUUCGUCUUCCU-UGGAAUGU	4	0.999998092705974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN47595_c0_g1_58_TPlot.pdf
TRINITY_DN4761_c0_g1:1219	si_a506	TRINITY_DN4761_c0_g1	1208	1228	1219	-33.40	-22.30	0.667664670658683	8	1-3,1228-1226;4-7,1224-1221;9-18,1220-1211	x-x,1225-1225[BULt];8-8,x-x[BULq];19-21,1210-1208[UP3]	...((((((((((-((((.(((&)))-)))).))))))))))...	CUCCAUUCCGAGG-AGACAGAA&UUC-GUCUUCCUUGGAAUGUAA	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN4761_c0_g1_1219_TPlot.pdf
TRINITY_DN47621_c0_g1:158	si_a889	TRINITY_DN47621_c0_g1	148	167	158	-23.60	-15.50	0.656779661016949	6	2-12,166-156;14-20,155-149	1-1,167-167[UP5];13-13,x-x[BULq];21-21,148-148[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	UUUUGUUA-UGCUGUAUUGAA&AUCAAUAUAGUAAUAAUAAGU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN47621_c0_g1_158_TPlot.pdf
TRINITY_DN47621_c0_g1:160	si_a887	TRINITY_DN47621_c0_g1	150	169	160	-22.90	-15.00	0.655021834061135	8	4-14,166-156;16-21,155-150	1-3,169-167[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	UUGUUA-UGCUGUAUUGAAGU&CAAUCAAUAUAGUAAUAAUAA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN47621_c0_g1_160_TPlot.pdf
TRINITY_DN4762_c0_g1:2517	si_s628	TRINITY_DN4762_c0_g1	2506	2532	2517	-35.40	-23.30	0.65819209039548	16	1-8,2532-2525;9-13,2518-2514;15-21,2512-2506	x-x,2524-2519[BULt];14-14,2513-2513[SIL]	(((((((.(((((......((((((((&))))))))------))))).)))))))	AAGCGCCGACGAACGCAUCAGGGUCGU&GCGAUCUU------UUCGUAGGCGUUU	3	0.999997908301714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN4762_c0_g1_2517_TPlot.pdf
TRINITY_DN4762_c0_g1:2713	si_s636	TRINITY_DN4762_c0_g1	2698	2722	2713	-40.80	-27.76	0.680392156862745	15	1-10,2722-2713;13-20,2706-2699	11-12,2712-2707[AILt];21-21,2698-2698[UP3]	.((((((((......((((((((((&))))))))))----..)))))))).	GCGAGGGCAUGCGGUCGUUUACGAA&UUCGUAGGCG----UUUGCCCUCGA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN4762_c0_g1_2713_TPlot.pdf
TRINITY_DN4762_c0_g1:2714	si_s635	TRINITY_DN4762_c0_g1	2699	2723	2714	-39.80	-28.26	0.710050251256282	13	1-11,2723-2713;14-21,2706-2699	12-13,2712-2707[AILt]	((((((((......(((((((((((&)))))))))))----..))))))))	CGAGGGCAUGCGGUCGUUUACGAAA&UUUCGUAGGCG----UUUGCCCUCG	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN4762_c0_g1_2714_TPlot.pdf
TRINITY_DN4763_c0_g2:1089	si_s497	TRINITY_DN4763_c0_g2	1078	1098	1089	-22.00	-14.50	0.659090909090909	8	2-15,1097-1084	1-1,1098-1098[UP5];16-21,1083-1078[UP3]	......((((((((((((((.&.))))))))))))))......	AUAGCGGUUUUGUUUAUGUUA&AAAUAUAAACAAAACAAUUCU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN4763_c0_g2_1089_TPlot.pdf
TRINITY_DN4763_c0_g2:1090	si_s496	TRINITY_DN4763_c0_g2	1079	1099	1090	-21.70	-14.50	0.668202764976959	9	3-16,1097-1084	1-2,1099-1098[UP5];17-21,1083-1079[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAGCGGUUUUGUUUAUGUUAU&UAAAUAUAAACAAAACAAUUC	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN4763_c0_g2_1090_TPlot.pdf
TRINITY_DN4763_c0_g2:1093	si_s493	TRINITY_DN4763_c0_g2	1082	1102	1093	-19.80	-14.50	0.732323232323232	12	6-19,1097-1084	1-5,1102-1098[UP5];20-21,1083-1082[UP3]	..((((((((((((((.....&.....))))))))))))))..	CGGUUUUGUUUAUGUUAUUUA&AUUUAAAUAUAAACAAAACAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN4763_c0_g2_1093_TPlot.pdf
TRINITY_DN4763_c0_g2:1095	si_s491	TRINITY_DN4763_c0_g2	1084	1104	1095	-19.50	-14.10	0.723076923076923	14	8-21,1097-1084	1-7,1104-1098[UP5]	((((((((((((((.......&.......))))))))))))))	GUUUUGUUUAUGUUAUUUAUU&UUAUUUAAAUAUAAACAAAAC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN4763_c0_g2_1095_TPlot.pdf
TRINITY_DN4763_c0_g2:846	si_a149	TRINITY_DN4763_c0_g2	834	855	846	-29.40	-20.70	0.704081632653061	8	1-10,855-846;12-15,844-841;16-18,839-837	11-11,845-845[SIL];x-x,840-840[BULt];19-21,836-834[UP3]	...(((.((((.((((((((((&)))))))))).))))-)))...	AUCGACACUUAUAACGACGACG&CGUUGUUGUUUUAAG-GUCAAU	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN4763_c0_g2_846_TPlot.pdf
TRINITY_DN4763_c0_g2:847	si_a148	TRINITY_DN4763_c0_g2	835	856	847	-30.30	-22.30	0.735973597359736	7	1-11,856-846;13-16,844-841;17-19,839-837	12-12,845-845[SIL];x-x,840-840[BULt];20-21,836-835[UP3]	..(((.((((.(((((((((((&))))))))))).))))-)))..	UCGACACUUAUAACGACGACGA&UCGUUGUUGUUUUAAG-GUCAA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN4763_c0_g2_847_TPlot.pdf
TRINITY_DN4763_c0_g2:848	si_a147	TRINITY_DN4763_c0_g2	836	857	848	-30.40	-22.30	0.733552631578947	6	2-12,856-846;14-17,844-841;18-20,839-837	1-1,857-857[UP5];13-13,845-845[SIL];x-x,840-840[BULt];21-21,836-836[UP3]	.(((.((((.(((((((((((.&.))))))))))).))))-))).	CGACACUUAUAACGACGACGAA&AUCGUUGUUGUUUUAAG-GUCA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN4763_c0_g2_848_TPlot.pdf
TRINITY_DN4763_c0_g2:851	si_a144	TRINITY_DN4763_c0_g2	840	860	851	-27.40	-18.30	0.667883211678832	11	5-15,856-846;17-20,844-841	1-4,860-857[UP5];16-16,845-845[SIL];21-21,840-840[UP3]	.((((.(((((((((((....&....))))))))))).)))).	ACUUAUAACGACGACGAAGCU&UUAAUCGUUGUUGUUUUAAGG	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN4763_c0_g2_851_TPlot.pdf
TRINITY_DN47642_c0_g1:232	si_a703	TRINITY_DN47642_c0_g1	221	241	232	-29.20	-19.00	0.650684931506849	10	2-9,240-233;11-15,231-227	1-1,241-241[UP5];10-10,232-232[SIL];16-21,226-221[UP3]	......(((((.((((((((.&.)))))))).)))))......	UGGAGAUGGAACGUACCGGUG&AACUGGUACAUUCCAAAAUAA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN47642_c0_g1_232_TPlot.pdf
TRINITY_DN4764_c0_g1:25	si_a503	TRINITY_DN4764_c0_g1	15	34	25	-32.10	-22.60	0.70404984423676	7.5	2-16,33-19;20-21,16-15	1-1,34-34[UP5];17-19,18-17[AILq]	((..-(((((((((((((((.&.)))))))))))))))...))	CAGG-CAGGGGAGACGAGAGU&UUUUUCGUCUUCCUUGGAAUG	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN4764_c0_g1_25_TPlot.pdf
TRINITY_DN4765_c0_g1:1327	si_a382	TRINITY_DN4765_c0_g1	1315	1337	1327	-24.60	-16.00	0.650406504065041	6.5	1-5,1337-1333;6-14,1331-1323;15-19,1321-1317	x-x,1332-1332[BULt];x-x,1322-1322[BULt];20-21,1316-1315[UP3]	..(((((.(((((((((.(((((&)))))-)))))))))-)))))..	ACAUUCUGUGAUUCGAAGGUCAU&AUGAU-UUCGAAUUA-AGAAUAU	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN4765_c0_g1_1327_TPlot.pdf
TRINITY_DN4765_c0_g1:1329	si_a380	TRINITY_DN4765_c0_g1	1317	1339	1329	-24.00	-17.60	0.733333333333333	4.5	1-7,1339-1333;8-16,1331-1323;17-21,1321-1317	x-x,1332-1332[BULt];x-x,1322-1322[BULt]	(((((.(((((((((.(((((((&)))))))-)))))))))-)))))	AUUCUGUGAUUCGAAGGUCAUUU&AAAUGAU-UUCGAAUUA-AGAAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN4765_c0_g1_1329_TPlot.pdf
TRINITY_DN4765_c0_g1:1333	si_a377	TRINITY_DN4765_c0_g1	1321	1342	1333	-24.50	-16.30	0.66530612244898	6.5	2-10,1341-1333;11-19,1331-1323	1-1,1342-1342[UP5];x-x,1332-1332[BULt];20-21,1322-1321[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	UGUGAUUCGAAGGUCAUUUUUA&CAAAAAUGAU-UUCGAAUUAAG	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a377_TRINITY_DN4765_c0_g1_1333_TPlot.pdf
TRINITY_DN4770_c0_g1:1056	si_a404	TRINITY_DN4770_c0_g1	1045	1065	1056	-21.70	-14.90	0.686635944700461	9.5	1-6,1065-1060;8-17,1058-1049	7-7,1059-1059[SIL];18-21,1048-1045[UP3]	....((((((((((.((((((&)))))).))))))))))....	AAUCUAUGAGCGAACCGAUUC&GAAUUGUUUUGUUUAUAUUUA	1	0.245075613746293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4770_c0_g1_1056_TPlot.pdf
TRINITY_DN4775_c0_g1:1510	si_s667	TRINITY_DN4775_c0_g1	1496	1519	1510	-28.90	-20.64	0.714186851211073	6.5	1-13,1519-1507;15-20,1502-1497	14-14,1506-1503[AILt];21-21,1496-1496[UP3]	.((((((....(((((((((((((&)))))))))))))---.)))))).	CUUCUGUUGUCGUCAAUUCGAUCU&GGAUCGAAUUGAU---UAUAGAAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN4775_c0_g1_1510_TPlot.pdf
TRINITY_DN4775_c0_g1:1517	si_s660	TRINITY_DN4775_c0_g1	1506	1526	1517	-35.00	-23.50	0.671428571428571	9.5	3-5,1524-1522;7-20,1520-1507	1-2,1526-1525[UP5];6-6,1521-1521[SIL];21-21,1506-1506[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	CGUCAAUUCGAUCUCGUGGCG&AAUCGGGGGAUCGAAUUGAUU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN4775_c0_g1_1517_TPlot.pdf
TRINITY_DN4775_c0_g1:1836	si_a138	TRINITY_DN4775_c0_g1	1825	1845	1836	-26.30	-17.86	0.679087452471483	12.5	3-5,1843-1841;10-21,1836-1825	1-2,1845-1844[UP5];6-9,1840-1837[SIL]	((((((((((((....(((..&..)))....))))))))))))	GACAACAACGAUGCCCUGCAA&UAGUAAUUAAUCGUUGUUGUU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN4775_c0_g1_1836_TPlot.pdf
TRINITY_DN4775_c0_g1:2523	si_s84	TRINITY_DN4775_c0_g1	2511	2532	2523	-32.30	-21.10	0.653250773993808	7	1-16,2532-2517;17-19,2515-2513	x-x,2516-2516[BULt];20-21,2512-2511[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	ACAGGCGAGGGGAAGGGAAAGG&UCUUUCCUUUCUUCUU-CUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4775_c0_g1_2523_TPlot.pdf
TRINITY_DN4775_c0_g1:4531	si_a689	TRINITY_DN4775_c0_g1	4520	4540	4531	-38.00	-25.10	0.660526315789474	8.5	1-2,4540-4539;4-8,4537-4533;10-19,4531-4522	3-3,4538-4538[SIL];9-9,4532-4532[SIL];20-21,4521-4520[UP3]	..((((((((((.(((((.((&)).))))).))))))))))..	UGCGGUUGUGUUGGAGGCAGC&GCGGUUUCGAACACAACUGGU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a689_TRINITY_DN4775_c0_g1_4531_TPlot.pdf
TRINITY_DN4775_c0_g1:5238	si_s87	TRINITY_DN4775_c0_g1	5227	5249	5238	-32.90	-21.80	0.662613981762918	10	1-4,5249-5246;5-9,5244-5240;10-19,5238-5229	x-x,5245-5245[BULt];x-x,5239-5239[BULt];20-21,5228-5227[UP3]	..((((((((((.(((((.((((&))))-)))))-))))))))))..	ACGUGAAGGAGACGGAGACGGGA&UUCC-UUUCU-UCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4775_c0_g1_5238_TPlot.pdf
TRINITY_DN4775_c0_g1:6268	si_a374	TRINITY_DN4775_c0_g1	6257	6277	6268	-25.60	-20.40	0.796875	6.5	1-17,6277-6261	18-21,6260-6257[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAGCCGGAGUCAUUUUUGGUU&GAUCAAAAAUGAUUUCGAAUU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN4775_c0_g1_6268_TPlot.pdf
TRINITY_DN4775_c0_g1:6271	si_a371	TRINITY_DN4775_c0_g1	6260	6280	6271	-30.30	-20.70	0.683168316831683	9	4-20,6277-6261	1-3,6280-6278[UP5];21-21,6260-6260[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CCGGAGUCAUUUUUGGUUAUU&UCGGAUCAAAAAUGAUUUCGA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN4775_c0_g1_6271_TPlot.pdf
TRINITY_DN4775_c0_g1:6272	si_a370	TRINITY_DN4775_c0_g1	6261	6281	6272	-29.50	-19.90	0.674576271186441	10	5-21,6277-6261	1-4,6281-6278[UP5]	(((((((((((((((((....&....)))))))))))))))))	CGGAGUCAUUUUUGGUUAUUG&AUCGGAUCAAAAAUGAUUUCG	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN4775_c0_g1_6272_TPlot.pdf
TRINITY_DN4775_c0_g1:6373	si_s783	TRINITY_DN4775_c0_g1	6362	6380	6373	-31.00	-20.86	0.672903225806452	12	1-6,6380-6375;12-20,6371-6363	7-11,6374-6372[AILq];21-21,6362-6362[UP3]	.(((((((((...--((((((&)))))).....))))))))).	AACGAGCUUGGAU--UGGCAA&UUGCUAUAAAACAAGCUCGUA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s783_TRINITY_DN4775_c0_g1_6373_TPlot.pdf
TRINITY_DN4775_c0_g1:6374	si_s782	TRINITY_DN4775_c0_g1	6363	6381	6374	-30.70	-21.56	0.70228013029316	11	1-7,6381-6375;13-21,6371-6363	8-12,6374-6372[AILq]	(((((((((...--(((((((&))))))).....)))))))))	ACGAGCUUGGAU--UGGCAAU&AUUGCUAUAAAACAAGCUCGU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s782_TRINITY_DN4775_c0_g1_6374_TPlot.pdf
TRINITY_DN4775_c0_g1:6375	si_s781	TRINITY_DN4775_c0_g1	6364	6382	6375	-30.30	-20.26	0.668646864686469	11	2-8,6381-6375;14-21,6371-6364	1-1,6382-6382[UP5];9-13,6374-6372[AILq]	((((((((...--(((((((.&.))))))).....))))))))	CGAGCUUGGAU--UGGCAAUU&UAUUGCUAUAAAACAAGCUCG	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s781_TRINITY_DN4775_c0_g1_6375_TPlot.pdf
TRINITY_DN4775_c0_g1:7066	si_a645	TRINITY_DN4775_c0_g1	7055	7075	7066	-29.40	-19.36	0.658503401360544	11	1-6,7075-7070;11-20,7065-7056	7-10,7069-7066[SIL];21-21,7055-7055[UP3]	.((((((((((....((((((&))))))....)))))))))).	AUCCCGAUAUAGAGAUCGGAA&UUUUGAGUAAUAUAUCGGGAA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN4775_c0_g1_7066_TPlot.pdf
TRINITY_DN4775_c0_g1:7067	si_a644	TRINITY_DN4775_c0_g1	7056	7076	7067	-29.30	-19.56	0.667576791808874	10.5	1-7,7076-7070;12-21,7065-7056	8-11,7069-7066[SIL]	((((((((((....(((((((&)))))))....))))))))))	UCCCGAUAUAGAGAUCGGAAG&UUUUUGAGUAAUAUAUCGGGA	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN4775_c0_g1_7067_TPlot.pdf
TRINITY_DN4776_c0_g1:1626	si_a637	TRINITY_DN4776_c0_g1	1615	1636	1626	-25.80	-16.90	0.655038759689922	6	1-6,1636-1631;7-21,1629-1615	x-x,1630-1630[BULt]	(((((((((((((((.((((((&))))))-)))))))))))))))	AUAUUGUUCAAGAGAUAUUGAC&GUCGAU-UUUUUUGAGUAAUAU	3	0.999999999965505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4776_c0_g1_1626_TPlot.pdf
TRINITY_DN4778_c0_g1:1364	si_s77	TRINITY_DN4778_c0_g1	1352	1373	1364	-25.50	-16.60	0.650980392156863	6.5	1-15,1373-1359;18-20,1355-1353	16-17,1358-1356[AILt];21-21,1352-1352[UP3]	.(((...(((((((((((((((&)))))))))))))))-..))).	UAGGUCUAGGAAAGAGAGAAAA&UUUUUUUUCUUUCCU-UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4778_c0_g1_1364_TPlot.pdf
TRINITY_DN4778_c0_g1:1366	si_s75	TRINITY_DN4778_c0_g1	1355	1375	1366	-24.00	-17.60	0.733333333333333	7	2-17,1374-1359	1-1,1375-1375[UP5];18-21,1358-1355[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUCUAGGAAAGAGAGAAAAUU&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4778_c0_g1_1366_TPlot.pdf
TRINITY_DN4778_c0_g1:1368	si_s73	TRINITY_DN4778_c0_g1	1357	1377	1368	-24.00	-17.60	0.733333333333333	9	4-19,1374-1359	1-3,1377-1375[UP5];20-21,1358-1357[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUAGGAAAGAGAGAAAAUUUG&UCUAUUUUUUUUCUUUCCUUU	4	0.99999999999403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4778_c0_g1_1368_TPlot.pdf
TRINITY_DN47799_c0_g1:169	si_s805	TRINITY_DN47799_c0_g1	159	178	169	-28.60	-18.90	0.660839160839161	7.5	1-10,178-169;13-19,167-161	11-12,168-168[AILq];20-21,160-159[UP3]	..(((((((.-((((((((((&))))))))))..)))))))..	AAAGAAGGUU-CGAAGAUAGA&UUUAUCUUCGUUACCUUUUCU	2	0.999999820446701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN47799_c0_g1_169_TPlot.pdf
TRINITY_DN47799_c0_g1:170	si_s804	TRINITY_DN47799_c0_g1	160	179	170	-27.90	-19.10	0.684587813620072	6.5	2-11,178-169;14-20,167-161	1-1,179-179[UP5];12-13,168-168[AILq];21-21,160-160[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	AAGAAGGUU-CGAAGAUAGAU&UUUUAUCUUCGUUACCUUUUC	2	0.999874865257008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN47799_c0_g1_170_TPlot.pdf
TRINITY_DN4779_c0_g1:641	si_s557	TRINITY_DN4779_c0_g1	630	650	641	-28.80	-19.70	0.684027777777778	7	1-2,650-649;5-15,646-636;17-21,634-630	3-4,648-647[SIL];16-16,635-635[SIL]	(((((.(((((((((((..((&))..))))))))))).)))))	UGUCCGGAAAGUAUUAGGACU&AGAAUUAAUAUUUUCGGGACA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN4779_c0_g1_641_TPlot.pdf
TRINITY_DN4780_c0_g1:1881	si_s79	TRINITY_DN4780_c0_g1	1870	1890	1881	-26.20	-17.20	0.656488549618321	12.5	5-17,1886-1874;19-19,1872-1872	1-4,1890-1887[UP5];18-18,1873-1873[SIL];20-21,1871-1870[UP3]	..(.(((((((((((((....&....))))))))))))).)..	GUGUGGGAGGGAGAGAACAUA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4780_c0_g1_1881_TPlot.pdf
TRINITY_DN4780_c0_g1:1885	si_s75	TRINITY_DN4780_c0_g1	1874	1894	1885	-24.00	-16.70	0.695833333333333	17	9-21,1886-1874	1-8,1894-1887[UP5]	(((((((((((((........&........)))))))))))))	GGGAGGGAGAGAACAUAAUCG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4780_c0_g1_1885_TPlot.pdf
TRINITY_DN4781_c0_g1:434	si_s892	TRINITY_DN4781_c0_g1	423	450	434	-29.50	-19.70	0.667796610169492	19	1-9,450-442;10-18,434-426	x-x,441-435[BULt];19-21,425-423[UP3]	...(((((((((.......(((((((((&)))))))))-------)))))))))...	AAAGAGGAGAAGAACUGGCGCCUAUUUG&UAAAUAGGC-------UUUCUCUUCAAU	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4781_c0_g1_434_TPlot.pdf
TRINITY_DN4781_c0_g1:442	si_s891	TRINITY_DN4781_c0_g1	424	451	442	-29.60	-19.70	0.66554054054054	19.5	2-10,450-442;11-19,434-426	1-1,451-451[UP5];x-x,441-435[BULt];20-21,425-424[UP3]	..(((((((((.......(((((((((.&.)))))))))-------)))))))))..	AAGAGGAGAAGAACUGGCGCCUAUUUGC&AUAAAUAGGC-------UUUCUCUUCAA	4	0.999974296613986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4781_c0_g1_442_TPlot.pdf
TRINITY_DN4781_c0_g1:443	si_s890	TRINITY_DN4781_c0_g1	425	452	443	-29.50	-19.70	0.667796610169492	20.5	3-11,450-442;12-20,434-426	1-2,452-451[UP5];x-x,441-435[BULt];21-21,425-425[UP3]	.(((((((((.......(((((((((..&..)))))))))-------))))))))).	AGAGGAGAAGAACUGGCGCCUAUUUGCU&AAUAAAUAGGC-------UUUCUCUUCA	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4781_c0_g1_443_TPlot.pdf
TRINITY_DN4781_c0_g1:444	si_s889	TRINITY_DN4781_c0_g1	426	453	444	-28.80	-19.20	0.666666666666667	21	4-12,450-442;13-21,434-426	1-3,453-451[UP5];x-x,441-435[BULt]	(((((((((.......(((((((((...&...)))))))))-------)))))))))	GAGGAGAAGAACUGGCGCCUAUUUGCUA&AAAUAAAUAGGC-------UUUCUCUUC	2	0.995762828526261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN4781_c0_g1_444_TPlot.pdf
TRINITY_DN47829_c0_g1:266	si_a424	TRINITY_DN47829_c0_g1	255	275	266	-28.40	-20.00	0.704225352112676	4	1-13,275-263;15-18,261-258	14-14,262-262[SIL];19-21,257-255[UP3]	...((((.(((((((((((((&))))))))))))).))))...	UGUCGGACCCUAUAUUUAUUU&AAAUAAAUAUAGGAUCCGUUG	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN47829_c0_g1_266_TPlot.pdf
TRINITY_DN47829_c0_g1:268	si_a422	TRINITY_DN47829_c0_g1	257	277	268	-27.20	-21.30	0.783088235294118	3	2-15,276-263;17-20,261-258	1-1,277-277[UP5];16-16,262-262[SIL];21-21,257-257[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	UCGGACCCUAUAUUUAUUUAU&UUAAAUAAAUAUAGGAUCCGU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN47829_c0_g1_268_TPlot.pdf
TRINITY_DN47829_c0_g1:269	si_a421	TRINITY_DN47829_c0_g1	258	278	269	-26.40	-21.10	0.799242424242424	4	3-16,276-263;18-21,261-258	1-2,278-277[UP5];17-17,262-262[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	CGGACCCUAUAUUUAUUUAUU&UUUAAAUAAAUAUAGGAUCCG	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN47829_c0_g1_269_TPlot.pdf
TRINITY_DN47829_c0_g1:270	si_a420	TRINITY_DN47829_c0_g1	259	279	270	-25.00	-19.30	0.772	6	4-17,276-263;19-21,261-259	1-3,279-277[UP5];18-18,262-262[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GGACCCUAUAUUUAUUUAUUU&AUUUAAAUAAAUAUAGGAUCC	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN47829_c0_g1_270_TPlot.pdf
TRINITY_DN47829_c0_g1:272	si_a418	TRINITY_DN47829_c0_g1	261	281	272	-21.20	-16.70	0.787735849056604	6	1-3,281-279;6-19,276-263	4-5,278-277[SIL];20-21,262-261[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	ACCCUAUAUUUAUUUAUUUAU&AUAUUUAAAUAAAUAUAGGAU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN47829_c0_g1_272_TPlot.pdf
TRINITY_DN47829_c0_g1:274	si_a416	TRINITY_DN47829_c0_g1	263	283	274	-20.50	-15.90	0.775609756097561	7	3-5,281-279;8-21,276-263	1-2,283-282[UP5];6-7,278-277[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	CCUAUAUUUAUUUAUUUAUUU&UUAUAUUUAAAUAAAUAUAGG	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN47829_c0_g1_274_TPlot.pdf
TRINITY_DN4782_c0_g1:236	si_a156	TRINITY_DN4782_c0_g1	222	246	236	-28.90	-19.20	0.664359861591695	10.5	1-7,246-240;8-10,238-236;11-21,232-222	x-x,239-239[BULt];x-x,235-233[BULt]	(((((((((((...(((.(((((((&)))))))-)))---)))))))))))	UGAAUAGAUUGGAGGCCUUUGAAAU&GUUUUAA-GGU---CAAUCUAUUCA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a156_TRINITY_DN4782_c0_g1_236_TPlot.pdf
TRINITY_DN4783_c0_g1:1883	si_s887	TRINITY_DN4783_c0_g1	1872	1893	1883	-26.80	-18.62	0.694776119402985	11	2-6,1892-1888;10-20,1883-1873	1-1,1893-1893[UP5];7-9,1887-1884[AILt];21-21,1872-1872[UP3]	.(((((((((((....(((((.&.)))))-...))))))))))).	CGAGAAAGCCUACACCGUUUUG&AAAAAU-AAAUAGGCUUUCUCU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4783_c0_g1_1883_TPlot.pdf
TRINITY_DN4783_c0_g1:2167	si_s94	TRINITY_DN4783_c0_g1	2157	2178	2167	-35.50	-25.40	0.715492957746479	7.5	1-8,2178-2171;9-13,2168-2164;16-21,2162-2157	x-x,2170-2169[BULt];14-15,2163-2163[AILq]	((((((.-(((((..((((((((&))))))))--)))))..))))))	CAAUCCU-GGCGAGGGGAAGAAG&CUUCUUCU--UCGCUUCGGAUUG	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN4783_c0_g1_2167_TPlot.pdf
TRINITY_DN4783_c0_g1:2173	si_s87	TRINITY_DN4783_c0_g1	2163	2183	2173	-32.90	-22.30	0.677811550151976	8	2-3,2182-2181;4-12,2179-2171;14-20,2170-2164	1-1,2183-2183[UP5];x-x,2180-2180[BULt];13-13,x-x[BULq];21-21,2163-2163[UP3]	.(((((((-(((((((((.((.&.))-))))))))).))))))).	UGGCGAGG-GGAAGAAGGCGAU&UUC-CUUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4783_c0_g1_2173_TPlot.pdf
TRINITY_DN4783_c0_g1:2174	si_s86	TRINITY_DN4783_c0_g1	2164	2184	2174	-32.90	-22.30	0.677811550151976	8.5	3-4,2182-2181;5-13,2179-2171;15-21,2170-2164	1-2,2184-2183[UP5];x-x,2180-2180[BULt];14-14,x-x[BULq]	(((((((-(((((((((.((..&..))-))))))))).)))))))	GGCGAGG-GGAAGAAGGCGAUU&UUUC-CUUUCUUCUUCUUCGCU	2	0.999999999921022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4783_c0_g1_2174_TPlot.pdf
TRINITY_DN4783_c0_g1:2179	si_s81	TRINITY_DN4783_c0_g1	2168	2189	2179	-28.90	-19.00	0.657439446366782	11	3-5,2187-2185;8-9,2182-2181;10-21,2179-2168	1-2,2189-2188[UP5];6-7,2184-2183[SIL];x-x,2180-2180[BULt]	((((((((((((.((..(((..&..)))..))-))))))))))))	AGGGGAAGAAGGCGAUUGAACA&UUUUCUUUC-CUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4783_c0_g1_2179_TPlot.pdf
TRINITY_DN4788_c0_g1:2443	si_a410	TRINITY_DN4788_c0_g1	2432	2451	2443	-17.80	-12.50	0.702247191011236	6	1-7,2451-2445;9-19,2444-2434	8-8,x-x[BULq];20-21,2433-2432[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	GAUAUUUAAGUGU-AACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999822692898121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4788_c0_g1_2443_TPlot.pdf
TRINITY_DN4789_c0_g1:1606	si_a225	TRINITY_DN4789_c0_g1	1595	1617	1606	-27.50	-17.98	0.653818181818182	13	3-5,1615-1613;8-20,1608-1596	1-2,1617-1616[UP5];6-7,1612-1609[AILt];21-21,1595-1595[UP3]	.(((((((((((((....(((..&..)))--..))))))))))))).	GUGAUUGUGGAAACUACAGAGGG&AACUC--AUGUUUCUAUAAUCAA	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN4789_c0_g1_1606_TPlot.pdf
TRINITY_DN4789_c0_g1:2964	si_a24	TRINITY_DN4789_c0_g1	2953	2973	2964	-24.20	-16.30	0.673553719008265	8	1-16,2973-2958	17-21,2957-2953[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAUGGGGACUAGAAGUAAAU&AUUUAUUUUUAGUUCUAAGAC	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN4789_c0_g1_2964_TPlot.pdf
TRINITY_DN4789_c0_g1:2966	si_a22	TRINITY_DN4789_c0_g1	2955	2975	2966	-23.50	-17.50	0.74468085106383	7	2-18,2974-2958	1-1,2975-2975[UP5];19-21,2957-2955[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUGGGGACUAGAAGUAAAUAC&CUAUUUAUUUUUAGUUCUAAG	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN4789_c0_g1_2966_TPlot.pdf
TRINITY_DN4789_c0_g1:2968	si_a20	TRINITY_DN4789_c0_g1	2957	2977	2968	-26.70	-17.50	0.655430711610487	8.5	4-20,2974-2958	1-3,2977-2975[UP5];21-21,2957-2957[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGGGACUAGAAGUAAAUACUG&GCCUAUUUAUUUUUAGUUCUA	2	0.999985103896774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4789_c0_g1_2968_TPlot.pdf
TRINITY_DN4789_c0_g1:2977	si_a407	TRINITY_DN4789_c0_g1	2966	2986	2977	-19.80	-13.00	0.656565656565657	8	1-10,2986-2977;13-18,2974-2969	11-12,2976-2975[SIL];19-21,2968-2966[UP3]	...((((((..((((((((((&))))))))))..))))))...	AAGUAAAUACUGACAAAACAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4789_c0_g1_2977_TPlot.pdf
TRINITY_DN4789_c0_g1:2978	si_a406	TRINITY_DN4789_c0_g1	2967	2987	2978	-19.80	-13.00	0.656565656565657	7	2-11,2986-2977;14-19,2974-2969	1-1,2987-2987[UP5];12-13,2976-2975[SIL];20-21,2968-2967[UP3]	..((((((..((((((((((.&.))))))))))..))))))..	AGUAAAUACUGACAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4789_c0_g1_2978_TPlot.pdf
TRINITY_DN4789_c0_g1:2979	si_a405	TRINITY_DN4789_c0_g1	2968	2988	2979	-19.80	-13.00	0.656565656565657	7	3-12,2986-2977;15-20,2974-2969	1-2,2988-2987[UP5];13-14,2976-2975[SIL];21-21,2968-2968[UP3]	.((((((..((((((((((..&..))))))))))..)))))).	GUAAAUACUGACAAAACAAAG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4789_c0_g1_2979_TPlot.pdf
TRINITY_DN4789_c0_g1:3105	si_a494	TRINITY_DN4789_c0_g1	3094	3113	3105	-29.50	-20.00	0.677966101694915	4.5	1-8,3113-3106;10-20,3105-3095	9-9,x-x[BULq];21-21,3094-3094[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	AAAGACGAGAAA-GAUAUAUU&AAUAUGUCGUUUUUCGUCUUC	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN4789_c0_g1_3105_TPlot.pdf
TRINITY_DN4789_c0_g1:3106	si_a493	TRINITY_DN4789_c0_g1	3095	3114	3106	-29.50	-20.30	0.688135593220339	4.5	2-9,3113-3106;11-21,3105-3095	1-1,3114-3114[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	AAGACGAGAAA-GAUAUAUUA&GAAUAUGUCGUUUUUCGUCUU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN4789_c0_g1_3106_TPlot.pdf
TRINITY_DN478_c0_g1:140	si_s550	TRINITY_DN478_c0_g1	129	148	140	-20.30	-14.40	0.70935960591133	6	1-5,148-144;8-21,142-129	6-7,143-143[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	AAAAUGUUGGUUCUC-UUUGA&UCAAAAUAGAAUUAAUAUUUU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN478_c0_g1_140_TPlot.pdf
TRINITY_DN478_c0_g1:1495	si_s78	TRINITY_DN478_c0_g1	1484	1504	1495	-26.20	-17.20	0.656488549618321	5	1-11,1504-1494;14-21,1491-1484	12-13,1493-1492[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AGAAGAAAUCAAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN478_c0_g1_1495_TPlot.pdf
TRINITY_DN478_c0_g1:1577	si_s94	TRINITY_DN478_c0_g1	1566	1590	1577	-35.50	-24.50	0.690140845070423	12.5	1-8,1590-1583;9-18,1578-1569	x-x,1582-1579[BULt];19-21,1568-1566[UP3]	...((((((((((....((((((((&))))))))----))))))))))...	ACCUCCGAGGUGAAAGCAGAAGAAG&CUUCUUCU----UCGCUUCGGAUUG	2	0.995490768745023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN478_c0_g1_1577_TPlot.pdf
TRINITY_DN478_c0_g1:1578	si_s93	TRINITY_DN478_c0_g1	1567	1591	1578	-34.80	-24.50	0.704022988505747	12.5	2-9,1590-1583;10-19,1578-1569	1-1,1591-1591[UP5];x-x,1582-1579[BULt];20-21,1568-1567[UP3]	..((((((((((....((((((((.&.))))))))----))))))))))..	CCUCCGAGGUGAAAGCAGAAGAAGC&UCUUCUUCU----UCGCUUCGGAUU	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN478_c0_g1_1578_TPlot.pdf
TRINITY_DN478_c0_g1:1581	si_s91	TRINITY_DN478_c0_g1	1569	1590	1581	-34.70	-25.10	0.723342939481268	5.5	1-8,1590-1583;10-12,1581-1579;13-21,1577-1569	9-9,1582-1582[SIL];x-x,1578-1578[BULt]	(((((((((.(((.((((((((&)))))))).)))-)))))))))	UCCGAGGUGAAAGCAGAAGAAG&UUUCUUCUUCUU-CGCUUCGGA	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN478_c0_g1_1581_TPlot.pdf
TRINITY_DN478_c0_g1:1585	si_s90	TRINITY_DN478_c0_g1	1570	1595	1585	-35.30	-23.60	0.668555240793201	14	1-3,1595-1593;5-12,1590-1583;13-21,1578-1570	4-4,1592-1591[AILt];x-x,1582-1579[BULt]	(((((((((....((((((((..(((&)))-.))))))))----)))))))))	CCGAGGUGAAAGCAGAAGAAGCCGAG&CUU-UCUUCUUCU----UCGCUUCGG	2	0.999999988091986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN478_c0_g1_1585_TPlot.pdf
TRINITY_DN478_c0_g1:1586	si_s89	TRINITY_DN478_c0_g1	1571	1596	1586	-35.30	-23.50	0.6657223796034	10	1-4,1596-1593;6-13,1590-1583;14-21,1578-1571	5-5,1592-1591[AILt];x-x,1582-1579[BULt]	((((((((....((((((((..((((&))))-.))))))))----))))))))	CGAGGUGAAAGCAGAAGAAGCCGAGG&CCUU-UCUUCUUCU----UCGCUUCG	2	0.999999993843147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN478_c0_g1_1586_TPlot.pdf
TRINITY_DN478_c0_g1:1689	si_s809	TRINITY_DN478_c0_g1	1678	1698	1689	-28.50	-19.00	0.666666666666667	7	1-6,1698-1693;8-11,1691-1688;13-18,1686-1681	7-7,1692-1692[SIL];12-12,1687-1687[SIL];19-21,1680-1678[UP3]	...((((((.((((.((((((&)))))).)))).))))))...	GCGAAGAAACGGUAUCGAAGA&UCUUCGUUACCUUUUCUUAAU	2	0.999991905066619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN478_c0_g1_1689_TPlot.pdf
TRINITY_DN478_c0_g1:1690	si_s808	TRINITY_DN478_c0_g1	1679	1699	1690	-28.60	-19.00	0.664335664335664	6	2-7,1698-1693;9-12,1691-1688;14-19,1686-1681	1-1,1699-1699[UP5];8-8,1692-1692[SIL];13-13,1687-1687[SIL];20-21,1680-1679[UP3]	..((((((.((((.((((((.&.)))))).)))).))))))..	CGAAGAAACGGUAUCGAAGAA&AUCUUCGUUACCUUUUCUUAA	3	0.99999999977787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN478_c0_g1_1690_TPlot.pdf
TRINITY_DN478_c0_g1:1691	si_s807	TRINITY_DN478_c0_g1	1680	1700	1691	-28.90	-19.00	0.657439446366782	7	3-8,1698-1693;10-13,1691-1688;15-20,1686-1681	1-2,1700-1699[UP5];9-9,1692-1692[SIL];14-14,1687-1687[SIL];21-21,1680-1680[UP3]	.((((((.((((.((((((..&..)))))).)))).)))))).	GAAGAAACGGUAUCGAAGAAA&UAUCUUCGUUACCUUUUCUUA	3	0.999999999988439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN478_c0_g1_1691_TPlot.pdf
TRINITY_DN478_c0_g1:1692	si_s806	TRINITY_DN478_c0_g1	1681	1701	1692	-28.60	-18.60	0.65034965034965	8	4-9,1698-1693;11-14,1691-1688;16-21,1686-1681	1-3,1701-1699[UP5];10-10,1692-1692[SIL];15-15,1687-1687[SIL]	((((((.((((.((((((...&...)))))).)))).))))))	AAGAAACGGUAUCGAAGAAAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN478_c0_g1_1692_TPlot.pdf
TRINITY_DN478_c0_g1:1696	si_s77	TRINITY_DN478_c0_g1	1680	1705	1696	-25.50	-17.50	0.686274509803922	11	1-12,1705-1694;13-14,1689-1688;15-21,1686-1680	x-x,1693-1690[BULt];x-x,1687-1687[BULt]	(((((((.((....((((((((((((&))))))))))))----))-)))))))	GAAGAAACGGUAUCGAAGAAAAAGAA&UUUUUUUUCUUU----CC-UUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN478_c0_g1_1696_TPlot.pdf
TRINITY_DN478_c0_g1:21	si_a783	TRINITY_DN478_c0_g1	10	30	21	-24.70	-16.70	0.676113360323887	8.5	3-14,28-17;16-18,15-13	1-2,30-29[UP5];15-15,16-16[SIL];19-21,12-10[UP3]	...(((.((((((((((((..&..)))))))))))).)))...	ACCUAGUAGAGUAGAAGAGAA&AACUCUUCUAUUUUUCUAUUU	3	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN478_c0_g1_21_TPlot.pdf
TRINITY_DN478_c0_g1:29	si_s73	TRINITY_DN478_c0_g1	17	38	29	-24.00	-16.90	0.704166666666667	7	1-16,38-23;18-21,20-17	17-17,22-21[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	AGAGUAGAAGAGAAGGAGUAGA&UCUAUUUUUUUUCUUU-CCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN478_c0_g1_29_TPlot.pdf
TRINITY_DN478_c0_g1:30	si_s72	TRINITY_DN478_c0_g1	18	39	30	-24.10	-17.20	0.713692946058091	7	1-17,39-23;19-21,20-18	18-18,22-21[AILt]	(((..(((((((((((((((((&)))))))))))))))))-.)))	GAGUAGAAGAGAAGGAGUAGAA&UUCUAUUUUUUUUCUUU-CCUU	2	0.999999998248444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN478_c0_g1_30_TPlot.pdf
TRINITY_DN478_c0_g1:34	si_s68	TRINITY_DN478_c0_g1	23	43	34	-23.10	-19.70	0.852813852813853	8.5	4-21,40-23	1-3,43-41[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGAGAAGGAGUAGAAGCAG&CAACUUCUAUUUUUUUUCUUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN478_c0_g1_34_TPlot.pdf
TRINITY_DN478_c0_g1:35	si_s67	TRINITY_DN478_c0_g1	24	44	35	-25.60	-18.60	0.7265625	9.5	5-21,40-24	1-4,44-41[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGAGAAGGAGUAGAAGCAGA&GCAACUUCUAUUUUUUUUCUU	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN478_c0_g1_35_TPlot.pdf
TRINITY_DN478_c0_g1:36	si_s66	TRINITY_DN478_c0_g1	25	45	36	-26.30	-17.70	0.673003802281369	11.5	6-21,40-25	1-5,45-41[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAGAAGGAGUAGAAGCAGAA&AGCAACUUCUAUUUUUUUUCU	3	0.999999760239991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN478_c0_g1_36_TPlot.pdf
TRINITY_DN478_c0_g1:836	si_a66	TRINITY_DN478_c0_g1	825	845	836	-26.70	-18.50	0.692883895131086	7.5	2-11,844-835;14-15,832-831;17-21,829-825	1-1,845-845[UP5];12-13,834-833[SIL];16-16,830-830[SIL]	(((((.((..((((((((((.&.))))))))))..)).)))))	GAGGAGAAGGUGAAGGAAGCU&CGCUUCUUUCAAAUUGUUUUU	4	0.999999887220161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN478_c0_g1_836_TPlot.pdf
TRINITY_DN4792_c1_g1:1880	si_a784	TRINITY_DN4792_c1_g1	1867	1889	1880	-24.70	-17.40	0.704453441295547	7.5	3-13,1887-1877;14-21,1874-1867	1-2,1889-1888[UP5];x-x,1876-1875[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GAAAUAGAGAAGAAUGGAAGAAU&ACUCUUCUAUUUU--UCUAUUUU	4	0.999999995304924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN4792_c1_g1_1880_TPlot.pdf
TRINITY_DN4792_c1_g1:1881	si_a783	TRINITY_DN4792_c1_g1	1870	1890	1881	-24.70	-17.20	0.696356275303644	10.5	4-17,1887-1874	1-3,1890-1888[UP5];18-21,1873-1870[UP3]	....((((((((((((((...&...))))))))))))))....	AUAGAGAAGAAUGGAAGAAUU&AACUCUUCUAUUUUUCUAUUU	2	0.999992005192978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN4792_c1_g1_1881_TPlot.pdf
TRINITY_DN4792_c1_g1:1882	si_a782	TRINITY_DN4792_c1_g1	1871	1891	1882	-26.40	-17.20	0.651515151515151	11.5	5-18,1887-1874	1-4,1891-1888[UP5];19-21,1873-1871[UP3]	...((((((((((((((....&....))))))))))))))...	UAGAGAAGAAUGGAAGAAUUC&CAACUCUUCUAUUUUUCUAUU	2	0.999999751840431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN4792_c1_g1_1882_TPlot.pdf
TRINITY_DN4796_c0_g3:621	si_s8	TRINITY_DN4796_c0_g3	610	630	621	-21.30	-14.40	0.676056338028169	10.5	4-7,627-624;10-20,621-611	1-3,630-628[UP5];8-9,623-622[SIL];21-21,610-610[UP3]	.(((((((((((..((((...&...))))..))))))))))).	UGUAUAGUAAUAUGAAGUCAU&AUUACUUAUUAUUACUAUAUU	2	0.998779475043878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN4796_c0_g3_621_TPlot.pdf
TRINITY_DN4796_c0_g3:622	si_s7	TRINITY_DN4796_c0_g3	611	631	622	-21.70	-14.40	0.663594470046083	11.5	5-8,627-624;11-21,621-611	1-4,631-628[UP5];9-10,623-622[SIL]	(((((((((((..((((....&....))))..)))))))))))	GUAUAGUAAUAUGAAGUCAUC&UAUUACUUAUUAUUACUAUAU	4	0.999995820903227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN4796_c0_g3_622_TPlot.pdf
TRINITY_DN4797_c0_g1:1266	si_s36	TRINITY_DN4797_c0_g1	1255	1275	1266	-25.00	-16.40	0.656	4.5	2-7,1274-1269;9-21,1267-1255	1-1,1275-1275[UP5];8-8,1268-1268[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UUCAAUUAUUGAAAAUUUAGG&ACUAAAUCUUUAAUAAUUGGA	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN4797_c0_g1_1266_TPlot.pdf
TRINITY_DN4799_c0_g1:1059	si_s218	TRINITY_DN4799_c0_g1	1045	1068	1059	-35.50	-23.30	0.656338028169014	10	1-2,1068-1067;4-10,1065-1059;11-14,1056-1053;15-20,1051-1046	3-3,1066-1066[SIL];x-x,1058-1057[BULt];x-x,1052-1052[BULt];21-21,1045-1045[UP3]	.((((((.((((..(((((((.((&)).)))))))--))))-)))))).	AGUUCGCGGCGGCUUUUCGAGGAC&GUGUUCGAAA--CCGC-GUGAAUA	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN4799_c0_g1_1059_TPlot.pdf
TRINITY_DN4799_c0_g1:1080	si_s230	TRINITY_DN4799_c0_g1	1069	1089	1080	-32.30	-23.00	0.712074303405573	8	1-13,1089-1077;16-17,1074-1073	14-15,1076-1075[SIL];18-21,1072-1069[UP3]	....((..(((((((((((((&)))))))))))))..))....	GGACUGUCUCCUUGUUCGCGC&GCGUGAAUAAGGAAUCAAUAG	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s230_TRINITY_DN4799_c0_g1_1080_TPlot.pdf
TRINITY_DN4799_c0_g1:1081	si_s229	TRINITY_DN4799_c0_g1	1070	1090	1081	-32.10	-25.40	0.791277258566978	7	1-14,1090-1077;17-18,1074-1073	15-16,1076-1075[SIL];19-21,1072-1070[UP3]	...((..((((((((((((((&))))))))))))))..))...	GACUGUCUCCUUGUUCGCGCG&CGCGUGAAUAAGGAAUCAAUA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s229_TRINITY_DN4799_c0_g1_1081_TPlot.pdf
TRINITY_DN4799_c0_g1:1088	si_s222	TRINITY_DN4799_c0_g1	1077	1099	1088	-36.30	-28.70	0.790633608815427	7	1-6,1099-1094;7-21,1091-1077	x-x,1093-1092[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	UCCUUGUUCGCGCGGGCUUUUGG&UCGAAA--CCGCGUGAAUAAGGA	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s222_TRINITY_DN4799_c0_g1_1088_TPlot.pdf
TRINITY_DN479_c0_g1:728	si_a153	TRINITY_DN479_c0_g1	717	738	728	-28.70	-18.90	0.658536585365854	9.5	1-8,738-731;9-19,729-719	x-x,730-730[BULt];20-21,718-717[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	ACAGGUUGAUCUUCGAGAUGAC&GUUGUUUU-AAGGUCAAUCUAU	2	0.987795330893525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN479_c0_g1_728_TPlot.pdf
TRINITY_DN479_c0_g1:731	si_a151	TRINITY_DN479_c0_g1	719	740	731	-28.90	-19.30	0.667820069204152	8.5	1-10,740-731;11-21,729-719	x-x,730-730[BULt]	(((((((((((.((((((((((&))))))))))-)))))))))))	AGGUUGAUCUUCGAGAUGACGG&UUGUUGUUUU-AAGGUCAAUCU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN479_c0_g1_731_TPlot.pdf
TRINITY_DN47_c0_g1:1096	si_a64	TRINITY_DN47_c0_g1	1085	1104	1096	-29.40	-21.60	0.73469387755102	8	1-2,1104-1103;4-19,1102-1087	3-3,x-x[BULq];20-21,1086-1085[UP3]	..((((((((((((((((-((&)).))))))))))))))))..	UUGCGAUUUGGGAGGAGC-AG&CUCGCUUCUUUCAAAUUGUUU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN47_c0_g1_1096_TPlot.pdf
TRINITY_DN47_c0_g1:3393	si_s752	TRINITY_DN47_c0_g1	3381	3405	3393	-30.30	-20.02	0.660726072607261	12	1-8,3405-3398;11-13,3392-3390;14-21,3388-3381	9-10,3397-3393[AILt];x-x,3389-3389[BULt]	((((((((.(((.....((((((((&))))))))---..)))-))))))))	UCGUUGUUCGUUCUCGGAAGGUCGA&UUGACCUU---AAAAC-AACAACGA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s752_TRINITY_DN47_c0_g1_3393_TPlot.pdf
TRINITY_DN47_c0_g1:3411	si_s738	TRINITY_DN47_c0_g1	3399	3420	3411	-37.60	-25.10	0.667553191489362	10.5	1-3,3420-3418;5-10,3416-3411;13-21,3407-3399	4-4,3417-3417[SIL];11-12,3410-3408[AILt]	(((((((((...((((((.(((&))).))))))-..)))))))))	AGGUCGAUCGGUUUCAUUGGUC&GACGGGUGAA-UAGAUUGACCU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s738_TRINITY_DN47_c0_g1_3411_TPlot.pdf
TRINITY_DN47_c0_g1:3858	si_s166	TRINITY_DN47_c0_g1	3840	3868	3858	-42.40	-27.70	0.653301886792453	11	1-5,3868-3864;6-18,3862-3850;19-21,3842-3840	x-x,3863-3863[BULt];x-x,3849-3843[BULt]	(((.......(((((((((((((.(((((&)))))-)))))))))))))-------)))	GGCGCCACAAAUCUUUAUCCUUGCGCCAU&AUGGC-CAGGGGUAAAGAU-------GCC	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s166_TRINITY_DN47_c0_g1_3858_TPlot.pdf
TRINITY_DN47_c0_g1:5822	si_s453	TRINITY_DN47_c0_g1	5812	5832	5822	-25.70	-17.00	0.66147859922179	5.5	1-7,5832-5826;8-16,5824-5816;18-20,5815-5813	x-x,5825-5825[BULt];17-17,x-x[BULq];21-21,5812-5812[UP3]	.(((-(((((((((.(((((((&)))))))-))))))))).))).	GAUG-GAUAAUUGUGUGUUGUG&UAUAACA-ACAAUUAUCUCAUA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s453_TRINITY_DN47_c0_g1_5822_TPlot.pdf
TRINITY_DN47_c0_g1:5823	si_s452	TRINITY_DN47_c0_g1	5813	5833	5823	-25.50	-18.20	0.713725490196078	5	1-8,5833-5826;9-17,5824-5816;19-21,5815-5813	x-x,5825-5825[BULt];18-18,x-x[BULq]	(((-(((((((((.((((((((&))))))))-))))))))).)))	AUG-GAUAAUUGUGUGUUGUGU&AUAUAACA-ACAAUUAUCUCAU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s452_TRINITY_DN47_c0_g1_5823_TPlot.pdf
TRINITY_DN47_c0_g1:5824	si_s451	TRINITY_DN47_c0_g1	5813	5834	5824	-25.70	-18.20	0.708171206225681	7	1-9,5834-5826;10-19,5824-5815	x-x,5825-5825[BULt];20-21,5814-5813[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUGGAUAAUUGUGUGUUGUGUG&UAUAUAACA-ACAAUUAUCUCA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s451_TRINITY_DN47_c0_g1_5824_TPlot.pdf
TRINITY_DN47_c0_g1:5827	si_s449	TRINITY_DN47_c0_g1	5815	5836	5827	-23.60	-20.30	0.860169491525424	6	1-11,5836-5826;12-21,5824-5815	x-x,5825-5825[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	GGAUAAUUGUGUGUUGUGUGUG&UAUAUAUAACA-ACAAUUAUCU	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN47_c0_g1_5827_TPlot.pdf
TRINITY_DN47_c0_g1:5828	si_s448	TRINITY_DN47_c0_g1	5816	5837	5828	-23.00	-20.80	0.904347826086957	6	1-12,5837-5826;13-21,5824-5816	x-x,5825-5825[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	GAUAAUUGUGUGUUGUGUGUGA&UUAUAUAUAACA-ACAAUUAUC	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN47_c0_g1_5828_TPlot.pdf
TRINITY_DN47_c0_g1:5829	si_s447	TRINITY_DN47_c0_g1	5817	5838	5829	-21.10	-17.60	0.834123222748815	6	2-13,5837-5826;14-21,5824-5817	1-1,5838-5838[UP5];x-x,5825-5825[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AUAAUUGUGUGUUGUGUGUGAC&AUUAUAUAUAACA-ACAAUUAU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN47_c0_g1_5829_TPlot.pdf
TRINITY_DN47_c0_g1:5830	si_s446	TRINITY_DN47_c0_g1	5818	5839	5830	-21.30	-16.40	0.769953051643192	8	3-14,5837-5826;15-21,5824-5818	1-2,5839-5838[UP5];x-x,5825-5825[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	UAAUUGUGUGUUGUGUGUGACG&UAUUAUAUAUAACA-ACAAUUA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN47_c0_g1_5830_TPlot.pdf
TRINITY_DN47_c0_g1:5832	si_a459	TRINITY_DN47_c0_g1	5821	5842	5832	-23.20	-15.20	0.655172413793103	9	1-2,5842-5841;3-21,5839-5821	x-x,5840-5840[BULt]	(((((((((((((((((((.((&))-)))))))))))))))))))	UUGUGUGUUGUGUGUGACGCAC&GU-UGUUAUAUAUAAUAUGUAA	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN47_c0_g1_5832_TPlot.pdf
TRINITY_DN47_c0_g1:5833	si_a458	TRINITY_DN47_c0_g1	5822	5843	5833	-23.80	-15.90	0.668067226890756	10.5	1-3,5843-5841;4-18,5839-5825	x-x,5840-5840[BULt];19-21,5824-5822[UP3]	...(((((((((((((((.(((&)))-)))))))))))))))...	UGUGUGUUGUGUGUGACGCACA&UGU-UGUUAUAUAUAAUAUGUA	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN47_c0_g1_5833_TPlot.pdf
TRINITY_DN47_c0_g1:5834	si_a457	TRINITY_DN47_c0_g1	5823	5844	5834	-23.50	-16.10	0.685106382978724	10.5	2-4,5843-5841;5-19,5839-5825	1-1,5844-5844[UP5];x-x,5840-5840[BULt];20-21,5824-5823[UP3]	..(((((((((((((((.(((.&.)))-)))))))))))))))..	GUGUGUUGUGUGUGACGCACAU&UUGU-UGUUAUAUAUAAUAUGU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN47_c0_g1_5834_TPlot.pdf
TRINITY_DN47_c0_g1:5835	si_a456	TRINITY_DN47_c0_g1	5824	5845	5835	-22.80	-16.10	0.706140350877193	11	3-5,5843-5841;6-20,5839-5825	1-2,5845-5844[UP5];x-x,5840-5840[BULt];21-21,5824-5824[UP3]	.(((((((((((((((.(((..&..)))-))))))))))))))).	UGUGUUGUGUGUGACGCACAUG&AUUGU-UGUUAUAUAUAAUAUG	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN47_c0_g1_5835_TPlot.pdf
TRINITY_DN47_c0_g1:5836	si_a455	TRINITY_DN47_c0_g1	5825	5846	5836	-21.10	-15.80	0.748815165876777	12	4-6,5843-5841;7-21,5839-5825	1-3,5846-5844[UP5];x-x,5840-5840[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	GUGUUGUGUGUGACGCACAUGC&AAUUGU-UGUUAUAUAUAAUAU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN47_c0_g1_5836_TPlot.pdf
TRINITY_DN47_c0_g1:5837	si_a454	TRINITY_DN47_c0_g1	5826	5847	5837	-21.30	-14.50	0.68075117370892	13	5-7,5843-5841;8-21,5839-5826	1-4,5847-5844[UP5];x-x,5840-5840[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	UGUUGUGUGUGACGCACAUGCU&UAAUUGU-UGUUAUAUAUAAUA	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN47_c0_g1_5837_TPlot.pdf
TRINITY_DN4800_c0_g1:615	si_s483	TRINITY_DN4800_c0_g1	604	624	615	-21.40	-14.06	0.657009345794393	8	1-13,624-612;18-21,607-604	14-17,611-608[SIL]	((((....(((((((((((((&)))))))))))))....))))	UAUAGAGCAGUAGGUGUAGGA&UCCUAUAUUUAUUUAAAUAUA	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN4800_c0_g1_615_TPlot.pdf
TRINITY_DN4800_c0_g1:616	si_s482	TRINITY_DN4800_c0_g1	605	625	616	-21.20	-14.40	0.679245283018868	10.5	1-14,625-612	15-21,611-605[UP3]	.......((((((((((((((&)))))))))))))).......	AUAGAGCAGUAGGUGUAGGAU&AUCCUAUAUUUAUUUAAAUAU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN4800_c0_g1_616_TPlot.pdf
TRINITY_DN4801_c0_g2:380	si_a401	TRINITY_DN4801_c0_g2	369	389	380	-22.60	-15.40	0.68141592920354	7.5	3-18,387-372	1-2,389-388[UP5];19-21,371-369[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAUUAAGCAAAACAAUUUUUG&AUAGAAUUGUUUUGUUUAUAU	3	0.999999899600981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN4801_c0_g2_380_TPlot.pdf
TRINITY_DN4802_c0_g1:1120	si_s76	TRINITY_DN4802_c0_g1	1109	1130	1120	-23.60	-16.10	0.682203389830509	6	1-9,1130-1122;10-16,1120-1114;18-20,1112-1110	x-x,1121-1121[BULt];17-17,1113-1113[SIL];21-21,1109-1109[UP3]	.(((.(((((((.(((((((((&)))))))))-))))))).))).	UAGAUGGGGAAGCAGAAAAAAU&AUUUUUUUU-CUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4802_c0_g1_1120_TPlot.pdf
TRINITY_DN4802_c0_g1:1122	si_s75	TRINITY_DN4802_c0_g1	1110	1131	1122	-24.00	-16.10	0.670833333333333	6	2-10,1130-1122;11-17,1120-1114;19-21,1112-1110	1-1,1131-1131[UP5];x-x,1121-1121[BULt];18-18,1113-1113[SIL]	(((.(((((((.(((((((((.&.)))))))))-))))))).)))	AGAUGGGGAAGCAGAAAAAAUU&UAUUUUUUUU-CUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4802_c0_g1_1122_TPlot.pdf
TRINITY_DN4802_c0_g1:952	si_a329	TRINITY_DN4802_c0_g1	940	961	952	-29.60	-20.60	0.695945945945946	4.5	2-11,960-951;12-13,949-948;15-21,946-940	1-1,961-961[UP5];x-x,950-950[BULt];14-14,947-947[SIL]	(((((((.((.((((((((((.&.))))))))))-)).)))))))	UGGGACAUGGAAAUAAAAAAAC&AUUUUUUUAUU-CCUUGUCCCG	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4802_c0_g1_952_TPlot.pdf
TRINITY_DN4802_c0_g1:953	si_a328	TRINITY_DN4802_c0_g1	941	962	953	-30.10	-19.90	0.661129568106312	6	3-12,960-951;13-14,949-948;16-21,946-941	1-2,962-961[UP5];x-x,950-950[BULt];15-15,947-947[SIL]	((((((.((.((((((((((..&..))))))))))-)).))))))	GGGACAUGGAAAUAAAAAAACC&GAUUUUUUUAUU-CCUUGUCCC	2	0.999933670316614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4802_c0_g1_953_TPlot.pdf
TRINITY_DN4804_c0_g1:2468	si_s696	TRINITY_DN4804_c0_g1	2457	2477	2468	-26.30	-17.58	0.668441064638783	11	3-9,2475-2469;13-21,2465-2457	1-2,2477-2476[UP5];10-12,2468-2466[SIL]	(((((((((...(((((((..&..)))))))...)))))))))	CGCUAGUAAUCAGACUGAUGC&UAAUUAGUCGAUUUAUUAGUG	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN4804_c0_g1_2468_TPlot.pdf
TRINITY_DN4804_c0_g1:3827	si_s805	TRINITY_DN4804_c0_g1	3813	3836	3827	-28.60	-18.70	0.653846153846154	11.5	1-11,3836-3826;12-17,3822-3817;19-20,3815-3814	x-x,3825-3823[BULt];18-18,3816-3816[SIL];21-21,3813-3813[UP3]	.((.((((((...(((((((((((&)))))))))))---)))))).)).	CGACGAGGUGUUCAUGAAGAUAGA&UUUAUCUUCGU---UACCUUUUCU	2	0.999999988239276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN4804_c0_g1_3827_TPlot.pdf
TRINITY_DN4804_c0_g1:3828	si_s804	TRINITY_DN4804_c0_g1	3814	3837	3828	-27.90	-19.10	0.684587813620072	10	1-12,3837-3826;13-18,3822-3817;20-21,3815-3814	x-x,3825-3823[BULt];19-19,3816-3816[SIL]	((.((((((...((((((((((((&))))))))))))---)))))).))	GACGAGGUGUUCAUGAAGAUAGAA&UUUUAUCUUCGU---UACCUUUUC	3	0.999999559920985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN4804_c0_g1_3828_TPlot.pdf
TRINITY_DN4804_c0_g1:3830	si_s802	TRINITY_DN4804_c0_g1	3816	3839	3830	-26.40	-17.60	0.666666666666667	9.5	3-14,3837-3826;15-20,3822-3817	1-2,3839-3838[UP5];x-x,3825-3823[BULt];21-21,3816-3816[UP3]	.((((((...((((((((((((..&..))))))))))))---)))))).	CGAGGUGUUCAUGAAGAUAGAACA&UAUUUUAUCUUCGU---UACCUUU	2	0.999996971726668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN4804_c0_g1_3830_TPlot.pdf
TRINITY_DN4804_c0_g1:3868	si_a487	TRINITY_DN4804_c0_g1	3857	3877	3868	-24.80	-17.20	0.693548387096774	11.5	5-20,3873-3858	1-4,3877-3874[UP5];21-21,3857-3857[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAGGCGAUGUGUUCUAACUG&UAUAUAGAAUAUGUCGUUUUU	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN4804_c0_g1_3868_TPlot.pdf
TRINITY_DN4804_c0_g1:4554	si_a326	TRINITY_DN4804_c0_g1	4543	4563	4554	-26.20	-19.80	0.755725190839695	5.5	1-5,4563-4559;7-11,4557-4553;13-21,4551-4543	6-6,4558-4558[SIL];12-12,4552-4552[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	GGCAAGGAACGAAAACAUCAU&AUGAUUUUUUUAUUCCUUGUC	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4804_c0_g1_4554_TPlot.pdf
TRINITY_DN4805_c0_g1:750	si_a759	TRINITY_DN4805_c0_g1	739	760	750	-32.60	-21.60	0.662576687116564	8	1-9,760-752;10-17,750-743	x-x,751-751[BULt];18-21,742-739[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AGAUUUAAGAACUCCAGAGGAG&CUCCUUUGG-GUUUUUGAUUGA	3	0.999999522802842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN4805_c0_g1_750_TPlot.pdf
TRINITY_DN4805_c0_g1:753	si_a757	TRINITY_DN4805_c0_g1	741	762	753	-33.10	-21.80	0.658610271903323	9	3-11,760-752;12-19,750-743	1-2,762-761[UP5];x-x,751-751[BULt];20-21,742-741[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	AUUUAAGAACUCCAGAGGAGCA&ACCUCCUUUGG-GUUUUUGAUU	4	0.999999999534866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4805_c0_g1_753_TPlot.pdf
TRINITY_DN4807_c0_g2:1121	si_a410	TRINITY_DN4807_c0_g2	1110	1129	1121	-17.80	-11.80	0.662921348314607	7	1-8,1129-1122;10-19,1121-1112	9-9,x-x[BULq];20-21,1111-1110[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	AAUAUUUAGAUG-AAGCAAAG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999998414443	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN4807_c0_g2_1121_TPlot.pdf
TRINITY_DN4807_c0_g2:1122	si_s482	TRINITY_DN4807_c0_g2	1111	1132	1122	-21.20	-14.62	0.689622641509434	9.5	1-5,1132-1128;9-21,1123-1111	6-8,1127-1124[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	AUAUUUAGAUGAAGCAAAGGAU&AUCCU-AUAUUUAUUUAAAUAU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN4807_c0_g2_1122_TPlot.pdf
TRINITY_DN4807_c0_g2:1154	si_s50	TRINITY_DN4807_c0_g2	1143	1163	1154	-29.00	-19.50	0.672413793103448	7.5	1-16,1163-1148	17-21,1147-1143[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUUCAGCUUGGGAUCCAAUU&AAUUGGAUUUCAAGUUAGCAA	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN4807_c0_g2_1154_TPlot.pdf
TRINITY_DN4807_c0_g2:1155	si_s49	TRINITY_DN4807_c0_g2	1144	1164	1155	-29.30	-19.50	0.665529010238908	7.5	2-17,1163-1148	1-1,1164-1164[UP5];18-21,1147-1144[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUCAGCUUGGGAUCCAAUUU&UAAUUGGAUUUCAAGUUAGCA	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN4807_c0_g2_1155_TPlot.pdf
TRINITY_DN4807_c0_g2:1156	si_s48	TRINITY_DN4807_c0_g2	1145	1165	1156	-28.80	-19.50	0.677083333333333	8.5	3-18,1163-1148	1-2,1165-1164[UP5];19-21,1147-1145[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCAGCUUGGGAUCCAAUUUA&AUAAUUGGAUUUCAAGUUAGC	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN4807_c0_g2_1156_TPlot.pdf
TRINITY_DN4807_c0_g2:1159	si_s45	TRINITY_DN4807_c0_g2	1148	1168	1159	-24.70	-19.30	0.781376518218624	10.5	6-21,1163-1148	1-5,1168-1164[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGCUUGGGAUCCAAUUUAAAG&UUAAUAAUUGGAUUUCAAGUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN4807_c0_g2_1159_TPlot.pdf
TRINITY_DN4807_c0_g2:1160	si_s44	TRINITY_DN4807_c0_g2	1149	1169	1160	-24.70	-18.60	0.753036437246964	12.5	7-21,1163-1149	1-6,1169-1164[UP5]	(((((((((((((((......&......)))))))))))))))	GCUUGGGAUCCAAUUUAAAGG&UUUAAUAAUUGGAUUUCAAGU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN4807_c0_g2_1160_TPlot.pdf
TRINITY_DN4807_c0_g2:1161	si_s43	TRINITY_DN4807_c0_g2	1150	1168	1161	-25.50	-20.00	0.784313725490196	5	1-6,1168-1163;9-21,1162-1150	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	CUUGGGAUCCAAU--UUAAAG&CUUUAAUAAUUGGAUUUCAAG	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN4807_c0_g2_1161_TPlot.pdf
TRINITY_DN4807_c0_g2:1163	si_s41	TRINITY_DN4807_c0_g2	1152	1170	1163	-25.00	-16.30	0.652	7	2-8,1169-1163;11-21,1162-1152	1-1,1170-1170[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	UGGGAUCCAAU--UUAAAGGG&AUCUUUAAUAAUUGGAUUUCA	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN4807_c0_g2_1163_TPlot.pdf
TRINITY_DN4807_c0_g2:982	si_a852	TRINITY_DN4807_c0_g2	971	991	982	-28.80	-19.40	0.673611111111111	4.5	2-6,990-986;8-16,984-976;18-21,974-971	1-1,991-991[UP5];7-7,985-985[SIL];17-17,975-975[SIL]	((((.(((((((((.(((((.&.))))).))))))))).))))	AUAGCUGGAUUUCAUGUUAGA&GCUAACUUGAAAUCCAAUUAU	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN4807_c0_g2_982_TPlot.pdf
TRINITY_DN4807_c0_g2:986	si_a848	TRINITY_DN4807_c0_g2	975	997	986	-31.30	-21.10	0.674121405750799	9	2-5,996-993;6-10,990-986;12-20,984-976	1-1,997-997[UP5];x-x,992-991[BULt];11-11,985-985[SIL];21-21,975-975[UP3]	.(((((((((.(((((..((((.&.))))--))))).))))))))).	CUGGAUUUCAUGUUAGACCAGCG&AGUUG--CUAACUUGAAAUCCAA	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN4807_c0_g2_986_TPlot.pdf
TRINITY_DN4807_c0_g2:987	si_a847	TRINITY_DN4807_c0_g2	976	998	987	-31.20	-20.80	0.666666666666667	10	3-6,996-993;7-11,990-986;13-21,984-976	1-2,998-997[UP5];x-x,992-991[BULt];12-12,985-985[SIL]	(((((((((.(((((..((((..&..))))--))))).)))))))))	UGGAUUUCAUGUUAGACCAGCGA&AAGUUG--CUAACUUGAAAUCCA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN4807_c0_g2_987_TPlot.pdf
TRINITY_DN4808_c0_g1:1567	si_a352	TRINITY_DN4808_c0_g1	1555	1576	1567	-22.50	-15.10	0.671111111111111	7	1-6,1576-1571;8-10,1569-1567;11-21,1565-1555	7-7,1570-1570[SIL];x-x,1566-1566[BULt]	(((((((((((.(((.((((((&)))))).)))-)))))))))))	GGUCAAGAUAGUGAUAAAUGUU&AAUAUUAAUU-CUAUUUUGAUC	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN4808_c0_g1_1567_TPlot.pdf
TRINITY_DN48098_c0_g1:43	si_s84	TRINITY_DN48098_c0_g1	22	52	43	-32.30	-22.60	0.69969040247678	25	1-12,52-41;13-20,30-23	x-x,40-31[BULt];21-21,22-22[UP3]	.((((((((..........((((((((((((&))))))))))))----------)))))))).	GGAGGGAGACAUGAGACCGAGAAGGGAGGGA&UCUUUCCUUUCU----------UCUUCUUCG	4	0.999999999982892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN48098_c0_g1_43_TPlot.pdf
TRINITY_DN48098_c0_g1:67	si_s84	TRINITY_DN48098_c0_g1	46	76	67	-32.30	-22.60	0.69969040247678	25	1-12,76-65;13-20,54-47	x-x,64-55[BULt];21-21,46-46[UP3]	.((((((((..........((((((((((((&))))))))))))----------)))))))).	GGAGGGAGACAUGGGACCGAGAAGGGAGGGA&UCUUUCCUUUCU----------UCUUCUUCG	4	0.999999999987955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN48098_c0_g1_67_TPlot.pdf
TRINITY_DN4811_c0_g1:3249	si_a52	TRINITY_DN4811_c0_g1	3236	3258	3249	-40.00	-26.00	0.65	6	2-3,3257-3256;5-13,3254-3246;14-15,3244-3243;16-20,3241-3237	1-1,3258-3258[UP5];4-4,3255-3255[SIL];x-x,3245-3245[BULt];x-x,3242-3242[BULt];21-21,3236-3236[UP3]	.(((((.((.(((((((((.((.&.)).)))))))))-))-))))).	UGAAGCAGACGUCGACUCCGAGC&UCUAGGAGUCGAC-UC-GCUUCU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a52_TRINITY_DN4811_c0_g1_3249_TPlot.pdf
TRINITY_DN4811_c0_g1:3250	si_a51	TRINITY_DN4811_c0_g1	3237	3262	3250	-41.10	-26.72	0.650121654501217	13	1-3,3262-3260;6-14,3254-3246;15-16,3244-3243;17-21,3241-3237	4-5,3259-3255[AILt];x-x,3245-3245[BULt];x-x,3242-3242[BULt]	(((((.((.(((((((((.....(((&)))---..)))))))))-))-)))))	GAAGCAGACGUCGACUCCGAGCUGGC&GUC---UAGGAGUCGAC-UC-GCUUC	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN4811_c0_g1_3250_TPlot.pdf
TRINITY_DN4811_c0_g1:3359	si_s83	TRINITY_DN4811_c0_g1	3348	3373	3359	-30.90	-20.18	0.653074433656958	13	2-3,3372-3371;4-9,3369-3364;11-21,3358-3348	1-1,3373-3373[UP5];x-x,3370-3370[BULt];10-10,3363-3359[AILt]	(((((((((((.....((((((.((.&.))-))))))----.)))))))))))	GAAGAAGAAGACUACCAGGAAAUGAU&UUC-UUUCCU----UUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4811_c0_g1_3359_TPlot.pdf
TRINITY_DN4811_c0_g1:3636	si_a348	TRINITY_DN4811_c0_g1	3625	3645	3636	-21.10	-14.20	0.672985781990521	9.5	2-15,3644-3631	1-1,3645-3645[UP5];16-21,3630-3625[UP3]	......((((((((((((((.&.))))))))))))))......	UUGUCUGGAUUGAUGUUUUCU&CGAAAAUAUUAAUUCUAUUUU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN4811_c0_g1_3636_TPlot.pdf
TRINITY_DN4812_c0_g1:327	si_a77	TRINITY_DN4812_c0_g1	316	336	327	-22.20	-16.70	0.752252252252252	8	2-17,335-320	1-1,336-336[UP5];18-21,319-316[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUGCGAUAGUGAGAAACGAUG&AAUUGUUUUUCAUUAUUAAGA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN4812_c0_g1_327_TPlot.pdf
TRINITY_DN4812_c0_g1:328	si_a76	TRINITY_DN4812_c0_g1	317	337	328	-21.20	-16.70	0.787735849056604	9	3-18,335-320	1-2,337-336[UP5];19-21,319-317[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGCGAUAGUGAGAAACGAUGC&AAAUUGUUUUUCAUUAUUAAG	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN4812_c0_g1_328_TPlot.pdf
TRINITY_DN4812_c0_g1:330	si_a74	TRINITY_DN4812_c0_g1	319	339	330	-22.20	-16.70	0.752252252252252	11	5-20,335-320	1-4,339-336[UP5];21-21,319-319[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAUAGUGAGAAACGAUGCCA&UCAAAUUGUUUUUCAUUAUUA	2	0.918052453677541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4812_c0_g1_330_TPlot.pdf
TRINITY_DN4812_c0_g1:331	si_a73	TRINITY_DN4812_c0_g1	320	340	331	-21.90	-16.50	0.753424657534247	11.5	6-21,335-320	1-5,340-336[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUAGUGAGAAACGAUGCCAC&UUCAAAUUGUUUUUCAUUAUU	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN4812_c0_g1_331_TPlot.pdf
TRINITY_DN4814_c0_g1:1609	si_a319	TRINITY_DN4814_c0_g1	1598	1619	1609	-22.40	-16.00	0.714285714285714	10	5-8,1615-1612;9-21,1610-1598	1-4,1619-1616[UP5];x-x,1611-1611[BULt]	(((((((((((((.((((....&....))))-)))))))))))))	AAUGAAGAAAUCACUGGAACAA&UUUAUCCA-UGAUUUUUUUAUU	4	0.99999918180225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4814_c0_g1_1609_TPlot.pdf
TRINITY_DN4814_c0_g1:3308	si_s71	TRINITY_DN4814_c0_g1	3297	3317	3308	-25.70	-20.90	0.813229571984436	7	2-16,3316-3302;18-21,3300-3297	1-1,3317-3317[UP5];17-17,3301-3301[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GGGAUAGAGAGGAGAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4814_c0_g1_3308_TPlot.pdf
TRINITY_DN4814_c0_g1:3836	si_s311	TRINITY_DN4814_c0_g1	3824	3845	3836	-30.60	-20.50	0.669934640522876	8.5	4-13,3842-3833;14-20,3831-3825	1-3,3845-3843[UP5];x-x,3832-3832[BULt];21-21,3824-3824[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	UACGAGAAGGGAUAGAAUUACA&GAAAAUUCUGUCC-UUCUUGUU	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN4814_c0_g1_3836_TPlot.pdf
TRINITY_DN4814_c0_g1:4170	si_s887	TRINITY_DN4814_c0_g1	4159	4179	4170	-26.80	-19.70	0.735074626865672	16	9-21,4171-4159	1-8,4179-4172[UP5]	(((((((((((((........&........)))))))))))))	AGAGGAGGCCUAUAUCCAGCA&AAAAAUAAAUAGGCUUUCUCU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4814_c0_g1_4170_TPlot.pdf
TRINITY_DN4815_c0_g1:1084	si_a140	TRINITY_DN4815_c0_g1	1073	1095	1084	-25.20	-16.46	0.653174603174603	15	1-4,1095-1092;8-18,1086-1076	5-7,1091-1087[AILt];19-21,1075-1073[UP3]	...(((((((((((.....((((&))))--...)))))))))))...	UCCGCGACAACGAUGACGUUUGC&GUAA--UUAAUCGUUGUUGUUUU	3	0.999999998248662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN4815_c0_g1_1084_TPlot.pdf
TRINITY_DN4816_c0_g1:1418	si_a68	TRINITY_DN4816_c0_g1	1407	1427	1418	-25.40	-19.50	0.767716535433071	10	1-8,1427-1420;11-20,1417-1408	9-10,1419-1418[SIL];21-21,1407-1407[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	CGAAGAACGAUCGGGGAGGGG&CUUCUUUCAAAUUGUUUUUCA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4816_c0_g1_1418_TPlot.pdf
TRINITY_DN4816_c0_g1:276	si_s77	TRINITY_DN4816_c0_g1	264	285	276	-25.50	-16.70	0.654901960784314	11.5	5-14,281-272;15-20,270-265	1-4,285-282[UP5];x-x,271-271[BULt];21-21,264-264[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	CAAGAGACGGAGAGAAGACUGA&UUUUUUUUCUUUCC-UUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4816_c0_g1_276_TPlot.pdf
TRINITY_DN4816_c0_g1:277	si_s76	TRINITY_DN4816_c0_g1	265	286	277	-23.60	-16.70	0.707627118644068	12.5	6-15,281-272;16-21,270-265	1-5,286-282[UP5];x-x,271-271[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	AAGAGACGGAGAGAAGACUGAU&AUUUUUUUUCUUUCC-UUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4816_c0_g1_277_TPlot.pdf
TRINITY_DN4816_c0_g1:278	si_s75	TRINITY_DN4816_c0_g1	266	287	278	-24.00	-15.90	0.6625	14	7-16,281-272;17-21,270-266	1-6,287-282[UP5];x-x,271-271[BULt]	(((((.((((((((((......&......))))))))))-)))))	AGAGACGGAGAGAAGACUGAUU&UAUUUUUUUUCUUUCC-UUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4816_c0_g1_278_TPlot.pdf
TRINITY_DN4816_c0_g1:2993	si_s86	TRINITY_DN4816_c0_g1	2981	3003	2993	-32.90	-24.40	0.741641337386018	8.5	3-8,3001-2996;9-10,2994-2993;11-21,2991-2981	1-2,3003-3002[UP5];x-x,2995-2995[BULt];x-x,2992-2992[BULt]	(((((((((((.((.((((((..&..))))))-))-)))))))))))	AGCGAAGGAGACAGCAGAGGAUU&UUUCCUUU-CU-UCUUCUUCGCU	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4816_c0_g1_2993_TPlot.pdf
TRINITY_DN4816_c0_g1:3052	si_a406	TRINITY_DN4816_c0_g1	3041	3061	3052	-19.80	-14.40	0.727272727272727	11	2-8,3060-3054;10-19,3052-3043	1-1,3061-3061[UP5];9-9,3053-3053[SIL];20-21,3042-3041[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	ACUGAAUGUAGAGGAGACGGG&AUUGUUUUGUUUAUAUUUAAA	2	0.999924879086262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN4816_c0_g1_3052_TPlot.pdf
TRINITY_DN4816_c0_g1:3053	si_a405	TRINITY_DN4816_c0_g1	3042	3062	3053	-19.80	-14.40	0.727272727272727	12	3-9,3060-3054;11-20,3052-3043	1-2,3062-3061[UP5];10-10,3053-3053[SIL];21-21,3042-3042[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CUGAAUGUAGAGGAGACGGGG&AAUUGUUUUGUUUAUAUUUAA	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4816_c0_g1_3053_TPlot.pdf
TRINITY_DN4816_c0_g1:3116	si_a334	TRINITY_DN4816_c0_g1	3104	3125	3116	-30.70	-20.30	0.661237785016287	10	1-13,3125-3113;14-15,3111-3110	x-x,3112-3112[BULt];16-21,3109-3104[UP3]	......((.(((((((((((((&)))))))))))))-))......	GGUUGGGGAGGCAGGGAAUGAA&UUUAUUCCUUGUC-CCGAAAAU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN4816_c0_g1_3116_TPlot.pdf
TRINITY_DN4816_c0_g1:3122	si_a328	TRINITY_DN4816_c0_g1	3110	3131	3122	-30.10	-23.50	0.780730897009967	8	3-19,3129-3113;20-21,3111-3110	1-2,3131-3130[UP5];x-x,3112-3112[BULt]	((.(((((((((((((((((..&..)))))))))))))))))-))	GGAGGCAGGGAAUGAAGAGAGG&GAUUUUUUUAUUCCUUGUC-CC	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4816_c0_g1_3122_TPlot.pdf
TRINITY_DN4816_c0_g1:3123	si_a327	TRINITY_DN4816_c0_g1	3112	3132	3123	-28.40	-20.70	0.72887323943662	10	4-20,3129-3113	1-3,3132-3130[UP5];21-21,3112-3112[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGGCAGGGAAUGAAGAGAGGG&UGAUUUUUUUAUUCCUUGUCC	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN4816_c0_g1_3123_TPlot.pdf
TRINITY_DN4816_c0_g1:3128	si_s813	TRINITY_DN4816_c0_g1	3117	3137	3128	-27.10	-19.50	0.719557195571956	11	1-14,3137-3124	15-21,3123-3117[UP3]	.......((((((((((((((&)))))))))))))).......	GGGAAUGAAGAGAGGGUGGCG&CGUUACCUUUUCUUAAUAAUG	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN4816_c0_g1_3128_TPlot.pdf
TRINITY_DN4816_c0_g1:3129	si_s812	TRINITY_DN4816_c0_g1	3118	3138	3129	-26.40	-21.10	0.799242424242424	10	1-15,3138-3124	16-21,3123-3118[UP3]	......(((((((((((((((&)))))))))))))))......	GGAAUGAAGAGAGGGUGGCGA&UCGUUACCUUUUCUUAAUAAU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN4816_c0_g1_3129_TPlot.pdf
TRINITY_DN4816_c0_g1:3130	si_s811	TRINITY_DN4816_c0_g1	3119	3139	3130	-26.40	-21.50	0.814393939393939	9.5	1-16,3139-3124	17-21,3123-3119[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAUGAAGAGAGGGUGGCGAG&UUCGUUACCUUUUCUUAAUAA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4816_c0_g1_3130_TPlot.pdf
TRINITY_DN4816_c0_g1:3134	si_s807	TRINITY_DN4816_c0_g1	3123	3143	3134	-28.90	-21.60	0.747404844290658	12	5-20,3139-3124	1-4,3143-3140[UP5];21-21,3123-3123[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAAGAGAGGGUGGCGAGCGUU&UAUCUUCGUUACCUUUUCUUA	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4816_c0_g1_3134_TPlot.pdf
TRINITY_DN4816_c0_g1:3135	si_s806	TRINITY_DN4816_c0_g1	3124	3144	3135	-28.60	-21.20	0.741258741258741	13	6-21,3139-3124	1-5,3144-3140[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGAGAGGGUGGCGAGCGUUU&UUAUCUUCGUUACCUUUUCUU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN4816_c0_g1_3135_TPlot.pdf
TRINITY_DN4816_c0_g1:3285	si_a602	TRINITY_DN4816_c0_g1	3274	3294	3285	-30.80	-20.20	0.655844155844156	8.5	1-4,3294-3291;6-8,3289-3287;10-17,3285-3278;20-21,3275-3274	5-5,3290-3290[SIL];9-9,3286-3286[SIL];18-19,3277-3276[SIL]	((..((((((((.(((.((((&)))).))).))))))))..))	CGUCUGGAGUUGGGAGCGUUC&GAAUUUUCGCAAUUCCAAUCG	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN4816_c0_g1_3285_TPlot.pdf
TRINITY_DN4816_c0_g1:416	si_s381	TRINITY_DN4816_c0_g1	405	425	416	-40.30	-28.20	0.699751861042184	10	1-14,425-412	15-21,411-405[UP3]	.......((((((((((((((&)))))))))))))).......	CACUAGCGGGCGGGCGCGCGG&UCGCGUGUCCGCCUUACAUUC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s381_TRINITY_DN4816_c0_g1_416_TPlot.pdf
TRINITY_DN4816_c0_g1:621	si_a526	TRINITY_DN4816_c0_g1	610	637	621	-45.60	-29.68	0.650877192982456	20.5	1-5,637-633;8-19,623-612	6-7,632-624[AILt];20-21,611-610[UP3]	..((((((((((((.........(((((&)))))-------..))))))))))))..	CAGUCGCUCGCGUGGGAUGACGACGCCU&AGGCG-------GACACGCGAGCGAUCG	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN4816_c0_g1_621_TPlot.pdf
TRINITY_DN4816_c0_g1:643	si_s626	TRINITY_DN4816_c0_g1	632	651	643	-36.10	-24.80	0.686980609418283	8	2-5,650-647;7-10,646-643;13-21,640-632	1-1,651-651[UP5];6-6,x-x[BULq];11-12,642-641[SIL]	(((((((((..((((-((((.&.)))).))))..)))))))))	ACGCCUACGCCAAGG-CGCUC&AAGCGAUCUUUUCGUAGGCGU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN4816_c0_g1_643_TPlot.pdf
TRINITY_DN48190_c0_g1:220	si_a551	TRINITY_DN48190_c0_g1	210	229	220	-31.60	-23.10	0.731012658227848	7.5	2-14,228-216;16-20,215-211	1-1,229-229[UP5];15-15,x-x[BULq];21-21,210-210[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	AGGGAG-UGAGGGAGUAGGUG&AAUCUAUUUCUUUAUCUCCCC	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN48190_c0_g1_220_TPlot.pdf
TRINITY_DN481_c0_g1:2768	si_a628	TRINITY_DN481_c0_g1	2757	2781	2768	-27.10	-17.62	0.650184501845018	17.5	1-4,2781-2778;9-21,2769-2757	5-8,2777-2770[AILt]	(((((((((((((........((((&))))----....)))))))))))))	AAAAGAAUCGACGGAGAGAAAACGC&GCGU----AUUAUGUCGAUUUUUUU	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN481_c0_g1_2768_TPlot.pdf
TRINITY_DN481_c0_g1:3000	si_a787	TRINITY_DN481_c0_g1	2989	3009	3000	-26.30	-17.60	0.669201520912548	7.5	1-5,3009-3005;7-13,3003-2997;16-20,2994-2990	6-6,3004-3004[SIL];14-15,2996-2995[SIL];21-21,2989-2989[UP3]	.(((((..(((((((.(((((&))))).)))))))..))))).	AGGGAAUCAGAGAAAAGGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.999999999999832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN481_c0_g1_3000_TPlot.pdf
TRINITY_DN481_c0_g1:3003	si_s71	TRINITY_DN481_c0_g1	2990	3012	3003	-25.70	-17.10	0.665369649805448	7	1-5,3012-3008;7-16,3006-2997;17-21,2994-2990	6-6,3007-3007[SIL];x-x,2996-2995[BULt]	(((((..((((((((((.(((((&))))).))))))))))--)))))	GGGAAUCAGAGAAAAGGAAGAAG&CUUCUAUUUUUUUUCU--UUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN481_c0_g1_3003_TPlot.pdf
TRINITY_DN481_c0_g1:3395	si_a451	TRINITY_DN481_c0_g1	3384	3405	3395	-23.60	-15.60	0.661016949152542	10.5	1-7,3405-3399;9-19,3396-3386	8-8,3398-3397[AILt];20-21,3385-3384[UP3]	..(((((((((((..(((((((&)))))))-.)))))))))))..	AUUGUAUGGCGAUUUGUUAUCU&AGAUAAU-UGUUGUUAUAUAUA	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN481_c0_g1_3395_TPlot.pdf
TRINITY_DN481_c0_g1:3475	si_a334	TRINITY_DN481_c0_g1	3464	3485	3475	-30.70	-20.40	0.664495114006515	10	1-8,3485-3478;9-15,3476-3470	x-x,3477-3477[BULt];16-21,3469-3464[UP3]	......(((((((.((((((((&))))))))-)))))))......	AAGGAAGGGACGAUGGAGUAAA&UUUAUUCC-UUGUCCCGAAAAU	4	0.999809637231312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN481_c0_g1_3475_TPlot.pdf
TRINITY_DN481_c0_g1:3476	si_a333	TRINITY_DN481_c0_g1	3465	3486	3476	-30.60	-20.60	0.673202614379085	10	2-9,3485-3478;10-16,3476-3470	1-1,3486-3486[UP5];x-x,3477-3477[BULt];17-21,3469-3465[UP3]	.....(((((((.((((((((.&.))))))))-))))))).....	AGGAAGGGACGAUGGAGUAAAU&UUUUAUUCC-UUGUCCCGAAAA	2	0.990946865782053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN481_c0_g1_3476_TPlot.pdf
TRINITY_DN481_c0_g1:3478	si_a332	TRINITY_DN481_c0_g1	3466	3487	3478	-30.60	-20.60	0.673202614379085	11	3-10,3485-3478;11-17,3476-3470	1-2,3487-3486[UP5];x-x,3477-3477[BULt];18-21,3469-3466[UP3]	....(((((((.((((((((..&..))))))))-)))))))....	GGAAGGGACGAUGGAGUAAAUA&UUUUUAUUCC-UUGUCCCGAAA	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN481_c0_g1_3478_TPlot.pdf
TRINITY_DN481_c0_g1:3479	si_a331	TRINITY_DN481_c0_g1	3467	3488	3479	-30.60	-20.60	0.673202614379085	11.5	4-11,3485-3478;12-18,3476-3470	1-3,3488-3486[UP5];x-x,3477-3477[BULt];19-21,3469-3467[UP3]	...(((((((.((((((((...&...))))))))-)))))))...	GAAGGGACGAUGGAGUAAAUAU&UUUUUUAUUCC-UUGUCCCGAA	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN481_c0_g1_3479_TPlot.pdf
TRINITY_DN481_c0_g1:3480	si_a330	TRINITY_DN481_c0_g1	3468	3489	3480	-30.50	-20.60	0.675409836065574	12.5	5-12,3485-3478;13-19,3476-3470	1-4,3489-3486[UP5];x-x,3477-3477[BULt];20-21,3469-3468[UP3]	..(((((((.((((((((....&....))))))))-)))))))..	AAGGGACGAUGGAGUAAAUAUG&UUUUUUUAUUCC-UUGUCCCGA	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN481_c0_g1_3480_TPlot.pdf
TRINITY_DN481_c0_g1:3481	si_a329	TRINITY_DN481_c0_g1	3469	3490	3481	-29.60	-20.60	0.695945945945946	12.5	6-13,3485-3478;14-20,3476-3470	1-5,3490-3486[UP5];x-x,3477-3477[BULt];21-21,3469-3469[UP3]	.(((((((.((((((((.....&.....))))))))-))))))).	AGGGACGAUGGAGUAAAUAUGC&AUUUUUUUAUUCC-UUGUCCCG	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN481_c0_g1_3481_TPlot.pdf
TRINITY_DN481_c0_g1:4013	si_s82	TRINITY_DN481_c0_g1	4002	4025	4013	-28.90	-22.80	0.788927335640139	10	1-8,4025-4018;9-21,4014-4002	x-x,4017-4015[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	GAGAAGAGGAGAGAGUGGGAGAAA&UUUCUUUC---CUUUCUUCUUCUU	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN481_c0_g1_4013_TPlot.pdf
TRINITY_DN481_c0_g1:4591	si_s68	TRINITY_DN481_c0_g1	4580	4601	4591	-23.10	-15.10	0.653679653679654	11.5	4-8,4598-4594;10-21,4591-4580	1-3,4601-4599[UP5];9-9,4593-4592[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	GAAGAAAAAAGAAGAGGAGGGA&CAACUUCU-AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN481_c0_g1_4591_TPlot.pdf
TRINITY_DN481_c0_g1:4592	si_s84	TRINITY_DN481_c0_g1	4579	4601	4592	-32.30	-21.60	0.668730650154799	7	1-10,4601-4592;11-13,4590-4588;15-21,4585-4579	x-x,4591-4591[BULt];14-14,4587-4586[AILt]	(((((((..(((.((((((((((&))))))))))-)))-.)))))))	CGAAGAAAAAAGAAGAGGAGGGA&UCUUUCCUUU-CUU-CUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN481_c0_g1_4592_TPlot.pdf
TRINITY_DN481_c0_g1:4593	si_s83	TRINITY_DN481_c0_g1	4580	4602	4593	-30.90	-20.10	0.650485436893204	7	1-11,4602-4592;12-14,4590-4588;16-21,4585-4580	x-x,4591-4591[BULt];15-15,4587-4586[AILt]	((((((..(((.(((((((((((&)))))))))))-)))-.))))))	GAAGAAAAAAGAAGAGGAGGGAA&UUCUUUCCUUU-CUU-CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN481_c0_g1_4593_TPlot.pdf
TRINITY_DN481_c0_g1:4642	si_s775	TRINITY_DN481_c0_g1	4631	4651	4642	-25.00	-16.30	0.652	10	2-14,4650-4638	1-1,4651-4651[UP5];15-21,4637-4631[UP3]	.......(((((((((((((.&.))))))))))))).......	CCGAUUCUAGCGAUAGUGAUA&AAUUACUAUUGCUAUAAAACA	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN481_c0_g1_4642_TPlot.pdf
TRINITY_DN481_c0_g1:4643	si_s774	TRINITY_DN481_c0_g1	4632	4652	4643	-24.70	-16.30	0.659919028340081	11	3-15,4650-4638	1-2,4652-4651[UP5];16-21,4637-4632[UP3]	......(((((((((((((..&..)))))))))))))......	CGAUUCUAGCGAUAGUGAUAG&UAAUUACUAUUGCUAUAAAAC	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN481_c0_g1_4643_TPlot.pdf
TRINITY_DN481_c0_g1:4645	si_s772	TRINITY_DN481_c0_g1	4634	4654	4645	-23.20	-16.30	0.702586206896552	12.5	5-17,4650-4638	1-4,4654-4651[UP5];18-21,4637-4634[UP3]	....(((((((((((((....&....)))))))))))))....	AUUCUAGCGAUAGUGAUAGAG&AUUAAUUACUAUUGCUAUAAA	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN481_c0_g1_4645_TPlot.pdf
TRINITY_DN4822_c0_g1:1607	si_s87	TRINITY_DN4822_c0_g1	1594	1616	1607	-32.90	-21.40	0.650455927051672	7	1-3,1616-1614;5-15,1612-1602;16-20,1599-1595	4-4,1613-1613[SIL];x-x,1601-1600[BULt];21-21,1594-1594[UP3]	.(((((..(((((((((((.(((&))).)))))))))))--))))).	CAGCGAAAAGAGGAAGAAGAGAA&UUCCUUUCUUCUUCU--UCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4822_c0_g1_1607_TPlot.pdf
TRINITY_DN4822_c0_g1:3327	si_s73	TRINITY_DN4822_c0_g1	3316	3343	3327	-24.00	-16.40	0.683333333333333	21.5	1-8,3343-3336;9-20,3328-3317	x-x,3335-3329[BULt];21-21,3316-3316[UP3]	.((((((((((((.......((((((((&))))))))-------)))))))))))).	UAGGGGAGGAGGAAAUUUCAGAAGUGGA&UCUAUUUU-------UUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4822_c0_g1_3327_TPlot.pdf
TRINITY_DN4822_c0_g1:3330	si_s70	TRINITY_DN4822_c0_g1	3319	3340	3330	-25.80	-19.20	0.744186046511628	8	1-6,3340-3335;7-7,3333-3333;10-21,3330-3319	x-x,3334-3334[BULt];8-9,3332-3331[SIL]	((((((((((((..(.((((((&))))))-)..))))))))))))	GGGAGGAGGAAAUUUCAGAAGU&ACUUCU-AUUUUUUUUCUUUCC	2	0.996304971364308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4822_c0_g1_3330_TPlot.pdf
TRINITY_DN48245_c0_g1:250	si_s79	TRINITY_DN48245_c0_g1	238	260	250	-26.20	-17.30	0.66030534351145	9	1-5,260-256;6-10,254-250;11-19,248-240	x-x,255-255[BULt];x-x,249-249[BULt];20-21,239-238[UP3]	..(((((((((.(((((.(((((&)))))-)))))-)))))))))..	CUGAAGAGGGGUAGAGAUAAAGA&UUUUU-UCUUU-CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN48245_c0_g1_250_TPlot.pdf
TRINITY_DN48245_c0_g1:251	si_s78	TRINITY_DN48245_c0_g1	239	260	251	-26.20	-18.70	0.713740458015267	8	1-5,260-256;7-11,254-250;12-20,248-240	6-6,255-255[SIL];x-x,249-249[BULt];21-21,239-239[UP3]	.(((((((((.(((((.(((((&))))).)))))-))))))))).	UGAAGAGGGGUAGAGAUAAAGA&UUUUUUUCUUU-CCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN48245_c0_g1_251_TPlot.pdf
TRINITY_DN48245_c0_g1:252	si_s77	TRINITY_DN48245_c0_g1	240	261	252	-25.50	-18.50	0.725490196078431	8	2-6,260-256;8-12,254-250;13-21,248-240	1-1,261-261[UP5];7-7,255-255[SIL];x-x,249-249[BULt]	(((((((((.(((((.(((((.&.))))).)))))-)))))))))	GAAGAGGGGUAGAGAUAAAGAU&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN48245_c0_g1_252_TPlot.pdf
TRINITY_DN4824_c0_g1:2601	si_a71	TRINITY_DN4824_c0_g1	2590	2610	2601	-23.30	-16.90	0.725321888412017	5	1-15,2610-2596;17-18,2594-2593	16-16,2595-2595[SIL];19-21,2592-2590[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UUUUGUAAAACAAUUUGGAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4824_c0_g1_2601_TPlot.pdf
TRINITY_DN4824_c0_g1:2602	si_a70	TRINITY_DN4824_c0_g1	2591	2611	2602	-23.90	-18.50	0.774058577405858	4	1-16,2611-2596;18-19,2594-2593	17-17,2595-2595[SIL];20-21,2592-2591[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	UUUGUAAAACAAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN4824_c0_g1_2602_TPlot.pdf
TRINITY_DN4824_c0_g1:2603	si_a69	TRINITY_DN4824_c0_g1	2592	2612	2603	-24.00	-19.40	0.808333333333333	3	1-17,2612-2596;19-20,2594-2593	18-18,2595-2595[SIL];21-21,2592-2592[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	UUGUAAAACAAUUUGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN4824_c0_g1_2603_TPlot.pdf
TRINITY_DN4824_c0_g1:2604	si_a68	TRINITY_DN4824_c0_g1	2593	2613	2604	-25.40	-19.50	0.767716535433071	3	2-18,2612-2596;20-21,2594-2593	1-1,2613-2613[UP5];19-19,2595-2595[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	UGUAAAACAAUUUGGAAGAAA&CUUCUUUCAAAUUGUUUUUCA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4824_c0_g1_2604_TPlot.pdf
TRINITY_DN4824_c0_g1:3073	si_a494	TRINITY_DN4824_c0_g1	3062	3083	3073	-29.50	-19.20	0.650847457627119	11	5-7,3079-3077;8-21,3075-3062	1-4,3083-3080[UP5];x-x,3076-3076[BULt]	((((((((((((((.(((....&....)))-))))))))))))))	GAGGAUGAAAAAUGCACAAAAG&AAUAUGU-CGUUUUUCGUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN4824_c0_g1_3073_TPlot.pdf
TRINITY_DN4824_c0_g1:3242	si_a497	TRINITY_DN4824_c0_g1	3231	3251	3242	-32.00	-21.40	0.66875	6.5	1-11,3251-3241;13-18,3239-3234	12-12,3240-3240[SIL];19-21,3233-3231[UP3]	...((((((.(((((((((((&))))))))))).))))))...	CUUGGAGACUGAAAACGACAU&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4824_c0_g1_3242_TPlot.pdf
TRINITY_DN4824_c0_g1:3246	si_a493	TRINITY_DN4824_c0_g1	3235	3255	3246	-29.50	-19.30	0.654237288135593	9	5-15,3251-3241;17-21,3239-3235	1-4,3255-3252[UP5];16-16,3240-3240[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GAGACUGAAAACGACAUUCAA&GAAUAUGUCGUUUUUCGUCUU	3	0.999999984089789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN4824_c0_g1_3246_TPlot.pdf
TRINITY_DN4825_c0_g1:1300	si_a318	TRINITY_DN4825_c0_g1	1288	1309	1300	-22.50	-15.00	0.666666666666667	10	5-16,1305-1294;17-21,1292-1288	1-4,1309-1306[UP5];x-x,1293-1293[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	AUGGGCAAAGUCAUGGAUCAAG&AUUUAUCCAUGAUUUU-UUUAU	2	0.999999990242138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4825_c0_g1_1300_TPlot.pdf
TRINITY_DN4826_c0_g1:1660	si_a794	TRINITY_DN4826_c0_g1	1648	1669	1660	-28.60	-19.80	0.692307692307692	7.5	3-13,1667-1657;16-21,1653-1648	1-2,1669-1668[UP5];14-15,1656-1654[AILt]	((((((...(((((((((((..&..)))))))))))-..))))))	UUUGGAGGAGGAGAAUAGAAUA&UUUUCUAUUUUCC-AAUCCGAA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN4826_c0_g1_1660_TPlot.pdf
TRINITY_DN4826_c0_g1:1662	si_s68	TRINITY_DN4826_c0_g1	1651	1671	1662	-23.10	-15.90	0.688311688311688	10.5	5-21,1667-1651	1-4,1671-1668[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGGAGGAGAAUAGAAUACU&CAACUUCUAUUUUUUUUCUUU	2	0.99999999276185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4826_c0_g1_1662_TPlot.pdf
TRINITY_DN4826_c0_g1:1667	si_a787	TRINITY_DN4826_c0_g1	1656	1678	1667	-26.30	-17.74	0.674524714828897	14.5	1-5,1678-1674;10-20,1667-1657	6-9,1673-1668[AILt];21-21,1656-1656[UP3]	.(((((((((((......(((((&)))))--....))))))))))).	AGGAGAAUAGAAUACUCAAGGAG&CUUCU--AUUUUUCUAUUUUCCA	4	0.999999999997331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN4826_c0_g1_1667_TPlot.pdf
TRINITY_DN4826_c0_g1:1678	si_a634	TRINITY_DN4826_c0_g1	1667	1688	1678	-26.40	-18.30	0.693181818181818	12.5	4-8,1685-1681;9-20,1679-1668	1-3,1688-1686[UP5];x-x,1680-1680[BULt];21-21,1667-1667[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	AUACUCAAGGAGGCUCGGCUGU&UAUGUCGA-UUUUUUUGAGUAA	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN4826_c0_g1_1678_TPlot.pdf
TRINITY_DN4827_c0_g1:1014	si_s79	TRINITY_DN4827_c0_g1	994	1023	1014	-26.20	-17.80	0.679389312977099	13	1-15,1023-1009;16-20,999-995	x-x,1008-1000[BULt];21-21,994-994[UP3]	.(((((.........(((((((((((((((&)))))))))))))))---------))))).	CAGAAGCAGCAAAACAAAGGGAAGAGAAGA&UUUUUUCUUUCCUUU---------CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4827_c0_g1_1014_TPlot.pdf
TRINITY_DN4827_c0_g1:1016	si_s77	TRINITY_DN4827_c0_g1	996	1025	1016	-25.50	-17.40	0.68235294117647	14	2-17,1024-1009;18-21,999-996	1-1,1025-1025[UP5];x-x,1008-1000[BULt]	((((.........((((((((((((((((.&.))))))))))))))))---------))))	GAAGCAGCAAAACAAAGGGAAGAGAAGAGG&UUUUUUUUCUUUCCUUU---------CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4827_c0_g1_1016_TPlot.pdf
TRINITY_DN4827_c0_g1:1018	si_s75	TRINITY_DN4827_c0_g1	1007	1027	1018	-24.00	-17.20	0.716666666666667	10.5	4-19,1024-1009	1-3,1027-1025[UP5];20-21,1008-1007[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACAAAGGGAAGAGAAGAGGAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4827_c0_g1_1018_TPlot.pdf
TRINITY_DN4827_c0_g1:1019	si_s74	TRINITY_DN4827_c0_g1	1008	1028	1019	-25.00	-17.20	0.688	11.5	5-20,1024-1009	1-4,1028-1025[UP5];21-21,1008-1008[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAAGGGAAGAGAAGAGGAAU&CUAUUUUUUUUCUUUCCUUUC	2	0.999999999998732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4827_c0_g1_1019_TPlot.pdf
TRINITY_DN4827_c0_g1:1021	si_s72	TRINITY_DN4827_c0_g1	1010	1031	1021	-24.10	-16.80	0.697095435684647	10.5	1-3,1031-1029;6-21,1025-1010	4-5,1028-1026[AILt]	((((((((((((((((...(((&)))-..))))))))))))))))	AAGGGAAGAGAAGAGGAAUGAA&UUC-UAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4827_c0_g1_1021_TPlot.pdf
TRINITY_DN4829_c0_g1:235	si_a322	TRINITY_DN4829_c0_g1	224	247	235	-27.00	-18.30	0.677777777777778	10	1-4,247-244;6-8,242-240;9-21,236-224	5-5,243-243[SIL];x-x,239-237[BULt]	(((((((((((((...(((.((((&)))).)))---)))))))))))))	AGGGAUGAAAAGAGUUUCACGGAU&AUCCAUGA---UUUUUUUAUUCCU	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN4829_c0_g1_235_TPlot.pdf
TRINITY_DN482_c0_g1:1633	si_a113	TRINITY_DN482_c0_g1	1622	1642	1633	-26.20	-17.30	0.66030534351145	14.5	6-17,1637-1626	1-5,1642-1638[UP5];18-21,1625-1622[UP3]	....((((((((((((.....&.....))))))))))))....	GCUCAAGCAGGCUCGUCACAU&AAAAUACGAGCUUGUUUUAUA	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN482_c0_g1_1633_TPlot.pdf
TRINITY_DN482_c0_g1:1657	si_a345	TRINITY_DN482_c0_g1	1645	1666	1657	-26.90	-17.50	0.650557620817844	7.5	1-11,1666-1656;14-20,1652-1646	12-13,1655-1653[AILt];21-21,1645-1645[UP3]	.(((((((...(((((((((((&)))))))))))-..))))))).	UUGGAAUUCGCUAUUUUUGGGA&UCCCGAAAAUA-UUAAUUCUAU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN482_c0_g1_1657_TPlot.pdf
TRINITY_DN482_c0_g1:1658	si_a344	TRINITY_DN482_c0_g1	1646	1667	1658	-28.50	-20.90	0.733333333333333	5.5	1-12,1667-1656;15-21,1652-1646	13-14,1655-1653[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	UGGAAUUCGCUAUUUUUGGGAC&GUCCCGAAAAUA-UUAAUUCUA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN482_c0_g1_1658_TPlot.pdf
TRINITY_DN482_c0_g1:365	si_a576	TRINITY_DN482_c0_g1	354	374	365	-28.70	-19.10	0.665505226480836	11	4-17,371-358	1-3,374-372[UP5];18-21,357-354[UP3]	....((((((((((((((...&...))))))))))))))....	GAACUGUUACAGACGUACAAC&AUCGUAUGUUUGUAACAAGAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN482_c0_g1_365_TPlot.pdf
TRINITY_DN482_c0_g1:366	si_a575	TRINITY_DN482_c0_g1	355	375	366	-28.60	-19.10	0.667832167832168	12	5-18,371-358	1-4,375-372[UP5];19-21,357-355[UP3]	...((((((((((((((....&....))))))))))))))...	AACUGUUACAGACGUACAACU&AAUCGUAUGUUUGUAACAAGA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN482_c0_g1_366_TPlot.pdf
TRINITY_DN482_c0_g1:368	si_a573	TRINITY_DN482_c0_g1	357	377	368	-28.70	-19.10	0.665505226480836	13.5	7-20,371-358	1-6,377-372[UP5];21-21,357-357[UP3]	.((((((((((((((......&......)))))))))))))).	CUGUUACAGACGUACAACUUA&UGAAUCGUAUGUUUGUAACAA	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN482_c0_g1_368_TPlot.pdf
TRINITY_DN4830_c0_g1:2414	si_a25	TRINITY_DN4830_c0_g1	2400	2423	2414	-26.50	-17.32	0.653584905660377	8	2-14,2422-2410;17-21,2404-2400	1-1,2423-2423[UP5];15-16,2409-2405[AILt]	(((((.....(((((((((((((.&.)))))))))))))---..)))))	GGUCUAUCGCGAACUAAAAAUGGU&UUUAUUUUUAGUUC---UAAGACC	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN4830_c0_g1_2414_TPlot.pdf
TRINITY_DN4831_c0_g1:212	si_a72	TRINITY_DN4831_c0_g1	202	221	212	-21.90	-14.50	0.662100456621005	5	1-6,221-216;8-14,214-208;16-21,207-202	7-7,215-215[SIL];15-15,x-x[BULq]	((((((-(((((((.((((((&)))))).))))))).))))))	AUAAUG-AAGACGACUUGAAA&UUUCAAAUUGUUUUUCAUUAU	2	0.999999957087422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN4831_c0_g1_212_TPlot.pdf
TRINITY_DN4831_c0_g1:218	si_a66	TRINITY_DN4831_c0_g1	207	228	218	-26.70	-18.50	0.692883895131086	5.5	1-9,228-220;10-12,218-216;14-21,214-207	x-x,219-219[BULt];13-13,215-215[SIL]	((((((((.(((.(((((((((&)))))))))-))).))))))))	GAAGACGACUUGAAAAGAAGUG&CGCUUCUUU-CAAAUUGUUUUU	3	0.999999879536454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN4831_c0_g1_218_TPlot.pdf
TRINITY_DN4831_c0_g1:96	si_s10	TRINITY_DN4831_c0_g1	84	105	96	-23.80	-15.70	0.659663865546218	10.5	4-10,102-96;11-21,94-84	1-3,105-103[UP5];x-x,95-95[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UCGAUAUAGUGAAUAGUGAUUU&UACUUAUUAU-UACUAUAUUGA	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN4831_c0_g1_96_TPlot.pdf
TRINITY_DN4832_c0_g1:1033	si_a411	TRINITY_DN4832_c0_g1	1022	1042	1033	-17.90	-12.20	0.681564245810056	8	1-8,1042-1035;11-18,1032-1025	9-10,1034-1033[SIL];19-21,1024-1022[UP3]	...((((((((..((((((((&))))))))..))))))))...	AAGUAUUUGAAGUUAAACAAG&UUUGUUUAUAUUUAAAUAAAU	2	0.99996777440934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4832_c0_g1_1033_TPlot.pdf
TRINITY_DN4836_c0_g1:2895	si_a618	TRINITY_DN4836_c0_g1	2879	2904	2895	-33.10	-22.00	0.664652567975831	13.5	5-15,2900-2890;16-21,2884-2879	1-4,2904-2901[UP5];x-x,2889-2885[BULt]	((((((.....(((((((((((....&....)))))))))))-----))))))	ACGUAAUUCUCUACGCCUGGUCAAAA&AAUCGACUAGGCGUA-----UUAUGU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a618_TRINITY_DN4836_c0_g1_2895_TPlot.pdf
TRINITY_DN4836_c0_g1:3486	si_a63	TRINITY_DN4836_c0_g1	3475	3495	3486	-30.20	-22.00	0.728476821192053	9	1-13,3495-3483	14-21,3482-3475[UP3]	........(((((((((((((&)))))))))))))........	GUGUCUGAGAGAGAAGCGAGU&ACUCGCUUCUUUCAAAUUGUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN4836_c0_g1_3486_TPlot.pdf
TRINITY_DN4836_c0_g1:4271	si_s87	TRINITY_DN4836_c0_g1	4260	4282	4271	-32.90	-21.40	0.650455927051672	9.5	2-4,4281-4279;5-8,4277-4274;9-19,4272-4262	1-1,4282-4282[UP5];x-x,4278-4278[BULt];x-x,4273-4273[BULt];20-21,4261-4260[UP3]	..(((((((((((.((((.(((.&.)))-))))-)))))))))))..	UCGUGGAGGAGAACGAGACGGAG&UUCC-UUUC-UUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4836_c0_g1_4271_TPlot.pdf
TRINITY_DN4836_c0_g1:492	si_a453	TRINITY_DN4836_c0_g1	481	501	492	-21.10	-15.40	0.729857819905213	14	4-18,498-484	1-3,501-499[UP5];19-21,483-481[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAAGUAUGUGACGGCGGUGUG&AUAAUUGUUGUUAUAUAUAAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN4836_c0_g1_492_TPlot.pdf
TRINITY_DN4836_c0_g1:9840	si_a499	TRINITY_DN4836_c0_g1	9830	9850	9840	-35.20	-23.90	0.678977272727273	6.5	2-9,9849-9842;10-14,9840-9836;16-21,9835-9830	1-1,9850-9850[UP5];x-x,9841-9841[BULt];15-15,x-x[BULq]	((((((-(((((.((((((((.&.))))))))-))))).))))))	CCGAGG-AGAUGAAAAGACGAA&GUCGUUUUU-CGUCUUCCUUGG	3	0.999999953479842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4836_c0_g1_9840_TPlot.pdf
TRINITY_DN4837_c0_g1:2049	si_s99	TRINITY_DN4837_c0_g1	2035	2058	2049	-34.60	-23.80	0.687861271676301	9.5	1-11,2058-2048;12-15,2044-2041;17-19,2039-2037	x-x,2047-2045[BULt];16-16,2040-2040[SIL];20-21,2036-2035[UP3]	..(((.((((...(((((((((((&)))))))))))---)))).)))..	CGUUCGAGUCGGGCGAAGCGAAGA&UCUUCGCUUCG---GAUUGGAAAA	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN4837_c0_g1_2049_TPlot.pdf
TRINITY_DN4837_c0_g1:2352	si_a328	TRINITY_DN4837_c0_g1	2341	2361	2352	-30.10	-20.60	0.684385382059801	9	1-2,2361-2360;4-19,2358-2343	3-3,2359-2359[SIL];20-21,2342-2341[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	UUGACAAGGGAUGGAAGGUUC&GAUUUUUUUAUUCCUUGUCCC	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4837_c0_g1_2352_TPlot.pdf
TRINITY_DN4837_c0_g1:2353	si_a327	TRINITY_DN4837_c0_g1	2342	2362	2353	-28.40	-20.80	0.732394366197183	8.5	2-3,2361-2360;5-20,2358-2343	1-1,2362-2362[UP5];4-4,2359-2359[SIL];21-21,2342-2342[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	UGACAAGGGAUGGAAGGUUCU&UGAUUUUUUUAUUCCUUGUCC	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN4837_c0_g1_2353_TPlot.pdf
TRINITY_DN4837_c0_g1:2414	si_s633	TRINITY_DN4837_c0_g1	2403	2424	2414	-37.90	-25.30	0.66754617414248	6.5	1-4,2424-2421;5-11,2419-2413;13-21,2411-2403	x-x,2420-2420[BULt];12-12,2412-2412[SIL]	(((((((((.(((((((.((((&))))-))))))).)))))))))	GGGGCAAACAUCUAUGACAAAG&CUUU-UCGUAGGCGUUUGCCCU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN4837_c0_g1_2414_TPlot.pdf
TRINITY_DN4837_c0_g1:2650	si_s296	TRINITY_DN4837_c0_g1	2639	2659	2650	-31.60	-20.60	0.651898734177215	11	1-7,2659-2653;9-10,2651-2650;13-16,2647-2644;19-20,2641-2640	8-8,2652-2652[SIL];11-12,2649-2648[SIL];17-18,2643-2642[SIL];21-21,2639-2639[UP3]	.((..((((..((.(((((((&))))))).))..))))..)).	CUUGGCGCAUGUCGGAUCGGC&GUCGAUUGGAAUUGCGAAAAU	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN4837_c0_g1_2650_TPlot.pdf
TRINITY_DN4837_c0_g1:3344	si_a142	TRINITY_DN4837_c0_g1	3333	3353	3344	-23.50	-15.30	0.651063829787234	16	8-21,3346-3333	1-7,3353-3347[UP5]	((((((((((((((.......&.......))))))))))))))	UUGGAGCAGCAAUGGAAUUCU&AAUUAAUCGUUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN4837_c0_g1_3344_TPlot.pdf
TRINITY_DN4837_c0_g1:3468	si_s632	TRINITY_DN4837_c0_g1	3454	3477	3468	-38.20	-26.50	0.693717277486911	8	1-10,3477-3468;12-18,3466-3460;19-21,3456-3454	11-11,3467-3467[SIL];x-x,3459-3457[BULt]	(((...(((((((.((((((((((&)))))))))).)))))))---)))	GGGAGACGAACGUGUACGAGAAGG&UCUUUUCGUAGGCGUUUG---CCC	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN4837_c0_g1_3468_TPlot.pdf
TRINITY_DN4837_c0_g1:3479	si_s621	TRINITY_DN4837_c0_g1	3468	3489	3479	-32.50	-26.30	0.809230769230769	8.5	3-6,3487-3484;8-21,3481-3468	1-2,3489-3488[UP5];7-7,3483-3482[AILt]	((((((((((((((..((((..&..))))-.))))))))))))))	UACGAGAAGGUCGCGAUGGACG&AAUCCA-AGCGAUCUUUUCGUA	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN4837_c0_g1_3479_TPlot.pdf
TRINITY_DN4837_c0_g1:3614	si_a292	TRINITY_DN4837_c0_g1	3605	3623	3614	-26.70	-17.78	0.665917602996255	6.5	1-12,3623-3612;17-21,3609-3605	13-16,3611-3610[AILq]	(((((..--((((((((((((&))))))))))))....)))))	CGAGUAC--UUUGAGUCCAAG&CUUGGAUUUAAAAAAGAUUCG	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a292_TRINITY_DN4837_c0_g1_3614_TPlot.pdf
TRINITY_DN4837_c0_g1:4112	si_s312	TRINITY_DN4837_c0_g1	4100	4121	4112	-29.00	-18.90	0.651724137931034	10	3-11,4119-4111;12-17,4109-4104	1-2,4121-4120[UP5];x-x,4110-4110[BULt];18-21,4103-4100[UP3]	....((((((.(((((((((..&..)))))))))-))))))....	CGCUGAGAGGCGACAGAAUUGC&AAAAUUCUGUC-CUUCUUGUUA	2	0.999999998948505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4837_c0_g1_4112_TPlot.pdf
TRINITY_DN4837_c0_g1:4114	si_s310	TRINITY_DN4837_c0_g1	4102	4123	4114	-32.10	-21.00	0.654205607476635	8	1-2,4123-4122;5-13,4119-4111;14-19,4109-4104	3-4,4121-4120[SIL];x-x,4110-4110[BULt];20-21,4103-4102[UP3]	..((((((.(((((((((..((&))..)))))))))-))))))..	CUGAGAGGCGACAGAAUUGCCG&CGAAAAUUCUGUC-CUUCUUGU	2	0.984730623737313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN4837_c0_g1_4114_TPlot.pdf
TRINITY_DN4837_c0_g1:4371	si_a301	TRINITY_DN4837_c0_g1	4360	4380	4371	-27.80	-18.60	0.669064748201439	11	4-6,4377-4375;8-19,4373-4362	1-3,4380-4378[UP5];7-7,4374-4374[SIL];20-21,4361-4360[UP3]	..((((((((((((.(((...&...))).))))))))))))..	GCGUCUAAGCGGAUGUUUAUU&AAAAAAGAUUCGCUUGGAUUU	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN4837_c0_g1_4371_TPlot.pdf
TRINITY_DN48386_c0_g1:94	si_s7	TRINITY_DN48386_c0_g1	83	103	94	-21.70	-14.80	0.682027649769585	12	4-17,100-87	1-3,103-101[UP5];18-21,86-83[UP3]	....((((((((((((((...&...))))))))))))))....	UAAAAGUAAUGAUAGGUGCCG&UAUUACUUAUUAUUACUAUAU	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN48386_c0_g1_94_TPlot.pdf
TRINITY_DN48386_c0_g1:96	si_s5	TRINITY_DN48386_c0_g1	85	105	96	-21.70	-14.80	0.682027649769585	13.5	6-19,100-87	1-5,105-101[UP5];20-21,86-85[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAGUAAUGAUAGGUGCCGGC&UAUAUUACUUAUUAUUACUAU	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN48386_c0_g1_96_TPlot.pdf
TRINITY_DN48398_c0_g1:59	si_s3	TRINITY_DN48398_c0_g1	48	68	59	-21.20	-14.60	0.688679245283019	15	8-21,61-48	1-7,68-62[UP5]	((((((((((((((.......&.......))))))))))))))	GGUGGUGAUAAGUAUAGCAAC&UUUAUAUUACUUAUUAUUACU	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN48398_c0_g1_59_TPlot.pdf
TRINITY_DN483_c0_g1:2467	si_s76	TRINITY_DN483_c0_g1	2456	2476	2467	-23.60	-17.80	0.754237288135593	8	3-18,2474-2459	1-2,2476-2475[UP5];19-21,2458-2456[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAAAGGAGAGAAGAAAACG&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN483_c0_g1_2467_TPlot.pdf
TRINITY_DN483_c0_g1:2469	si_s74	TRINITY_DN483_c0_g1	2458	2482	2469	-25.00	-18.20	0.728	10.5	1-5,2482-2478;6-20,2473-2459	x-x,2477-2474[BULt];21-21,2458-2458[UP3]	.(((((((((((((((....(((((&)))))----))))))))))))))).	AAAAGGAGAGAAGAAAACGCAAUAG&CUAUU----UUUUUUCUUUCCUUUC	2	0.999996527411654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN483_c0_g1_2469_TPlot.pdf
TRINITY_DN483_c0_g1:2470	si_s73	TRINITY_DN483_c0_g1	2459	2483	2470	-24.00	-18.20	0.758333333333333	10.5	2-6,2482-2478;7-21,2473-2459	1-1,2483-2483[UP5];x-x,2477-2474[BULt]	(((((((((((((((....(((((.&.)))))----)))))))))))))))	AAAGGAGAGAAGAAAACGCAAUAGU&UCUAUU----UUUUUUCUUUCCUUU	3	0.999999836795323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN483_c0_g1_2470_TPlot.pdf
TRINITY_DN483_c0_g1:2471	si_s72	TRINITY_DN483_c0_g1	2460	2484	2471	-24.10	-17.30	0.717842323651452	12.5	3-7,2482-2478;8-21,2473-2460	1-2,2484-2483[UP5];x-x,2477-2474[BULt]	((((((((((((((....(((((..&..)))))----))))))))))))))	AAGGAGAGAAGAAAACGCAAUAGUA&UUCUAUU----UUUUUUCUUUCCUU	3	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN483_c0_g1_2471_TPlot.pdf
TRINITY_DN483_c0_g1:2693	si_a415	TRINITY_DN483_c0_g1	2682	2702	2693	-18.10	-12.40	0.685082872928177	9.5	4-15,2699-2688;17-21,2686-2682	1-3,2702-2700[UP5];16-16,2687-2687[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	CUGUGAUUGUUUAGAUGUCUU&UUUAUAUUUAAAUAAAUAUAG	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN483_c0_g1_2693_TPlot.pdf
TRINITY_DN483_c0_g1:2713	si_a99	TRINITY_DN483_c0_g1	2703	2722	2713	-28.20	-19.20	0.680851063829787	5.5	1-11,2722-2712;14-21,2710-2703	12-13,2711-2711[AILq]	((((((((.-(((((((((((&)))))))))))..))))))))	GUGUUUUAA-UUUGUUGCCUU&AAGGUAACGAAGAUAAAAUAC	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a99_TRINITY_DN483_c0_g1_2713_TPlot.pdf
TRINITY_DN483_c0_g1:2714	si_a98	TRINITY_DN483_c0_g1	2704	2723	2714	-26.40	-17.50	0.662878787878788	4.5	1-12,2723-2712;15-21,2710-2704	13-14,2711-2711[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	UGUUUUAA-UUUGUUGCCUUU&AAAGGUAACGAAGAUAAAAUA	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN483_c0_g1_2714_TPlot.pdf
TRINITY_DN483_c0_g1:667	si_a402	TRINITY_DN483_c0_g1	656	676	667	-22.40	-17.10	0.763392857142857	5	1-14,676-663;16-18,661-659	15-15,662-662[SIL];19-21,658-656[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	UCAAUAUACGAAACAAUUCUA&UAGAAUUGUUUUGUUUAUAUU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN483_c0_g1_667_TPlot.pdf
TRINITY_DN483_c0_g1:669	si_a400	TRINITY_DN483_c0_g1	658	678	669	-22.80	-19.70	0.864035087719298	2.5	1-16,678-663;18-20,661-659	17-17,662-662[SIL];21-21,658-658[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AAUAUACGAAACAAUUCUAUA&UAUAGAAUUGUUUUGUUUAUA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN483_c0_g1_669_TPlot.pdf
TRINITY_DN483_c0_g1:676	si_a393	TRINITY_DN483_c0_g1	665	685	676	-22.70	-16.00	0.704845814977974	9.5	5-6,681-680;8-21,678-665	1-4,685-682[UP5];7-7,679-679[SIL]	((((((((((((((.((....&....)).))))))))))))))	GAAACAAUUCUAUAAUCCUCC&UUAAGAAUAUAGAAUUGUUUU	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN483_c0_g1_676_TPlot.pdf
TRINITY_DN4841_c0_g1:8389	si_a890	TRINITY_DN4841_c0_g1	8380	8398	8389	-23.80	-15.50	0.651260504201681	5.5	2-13,8397-8386;16-20,8385-8381	1-1,8398-8398[UP5];14-15,x-x[BULq];21-21,8380-8380[UP3]	.(((((--((((((((((((.&.))))))))))))..))))).	AACUUA--GUUACUGUAUUGU&UCAAUAUAGUAAUAAUAAGUA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN4841_c0_g1_8389_TPlot.pdf
TRINITY_DN4841_c0_g1:8394	si_a464	TRINITY_DN4841_c0_g1	8382	8403	8394	-19.60	-15.00	0.76530612244898	6.5	1-12,8403-8392;13-19,8390-8384	x-x,8391-8391[BULt];20-21,8383-8382[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	CUUAGUUACUGUAUUGUAUAUA&UAUAUAUAAUAU-GUAAUUAUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN4841_c0_g1_8394_TPlot.pdf
TRINITY_DN4841_c0_g1:8396	si_a462	TRINITY_DN4841_c0_g1	8384	8405	8396	-21.20	-17.20	0.811320754716981	3.5	1-14,8405-8392;15-21,8390-8384	x-x,8391-8391[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	UAGUUACUGUAUUGUAUAUAAU&GUUAUAUAUAAUAU-GUAAUUA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN4841_c0_g1_8396_TPlot.pdf
TRINITY_DN4841_c0_g1:8397	si_a461	TRINITY_DN4841_c0_g1	8385	8406	8397	-21.50	-16.50	0.767441860465116	4	1-15,8406-8392;16-21,8390-8385	x-x,8391-8391[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	AGUUACUGUAUUGUAUAUAAUA&UGUUAUAUAUAAUAU-GUAAUU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN4841_c0_g1_8397_TPlot.pdf
TRINITY_DN4841_c0_g1:8398	si_a460	TRINITY_DN4841_c0_g1	8386	8407	8398	-21.60	-16.10	0.74537037037037	5	2-16,8406-8392;17-21,8390-8386	1-1,8407-8407[UP5];x-x,8391-8391[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GUUACUGUAUUGUAUAUAAUAU&UUGUUAUAUAUAAUAU-GUAAU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN4841_c0_g1_8398_TPlot.pdf
TRINITY_DN4841_c0_g1:8404	si_s439	TRINITY_DN4841_c0_g1	8393	8413	8404	-21.50	-14.80	0.688372093023256	5.5	1-3,8413-8411;5-19,8409-8395	4-4,8410-8410[SIL];20-21,8394-8393[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	UAUUGUAUAUAAUAUGUUGUU&AAUUACAUAUUAUAUAUAACA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN4841_c0_g1_8404_TPlot.pdf
TRINITY_DN4841_c0_g2:1238	si_s35	TRINITY_DN4841_c0_g2	1222	1247	1238	-24.00	-15.90	0.6625	13	1-4,1247-1244;6-11,1242-1237;12-21,1231-1222	5-5,1243-1243[SIL];x-x,1236-1232[BULt]	((((((((((.....((((((.((((&)))).))))))-----))))))))))	CCAGUUGUUAAAAAUAAGAUUGAGUU&AACUAAAUCUU-----UAAUAAUUGG	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN4841_c0_g2_1238_TPlot.pdf
TRINITY_DN4841_c0_g2:3713	si_a71	TRINITY_DN4841_c0_g2	3702	3722	3713	-23.30	-15.60	0.669527896995708	3.5	2-16,3721-3707;19-21,3704-3702	1-1,3722-3722[UP5];17-18,3706-3705[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	UAAGAAAGAACAAUUUGAAAU&CUUUCAAAUUGUUUUUCAUUA	2	0.999998248693552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4841_c0_g2_3713_TPlot.pdf
TRINITY_DN4841_c0_g2:3858	si_a320	TRINITY_DN4841_c0_g2	3845	3867	3858	-24.40	-18.70	0.766393442622951	8.5	3-11,3865-3857;12-21,3854-3845	1-2,3867-3866[UP5];x-x,3856-3855[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	GAAUAAGAAGUCAUCAUGGAUUA&UUAUCCAUGAU--UUUUUUAUUC	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN4841_c0_g2_3858_TPlot.pdf
TRINITY_DN4841_c5_g2:2194	si_s519	TRINITY_DN4841_c5_g2	2183	2204	2194	-24.40	-17.00	0.69672131147541	12	1-7,2204-2198;10-18,2194-2186	8-9,2197-2195[AILt];19-21,2185-2183[UP3]	...(((((((((...(((((((&)))))))-..)))))))))...	GACGAUUUCGAGGAGGAGGAUA&UAUUCUU-AAUUCGAAAUCAUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN4841_c5_g2_2194_TPlot.pdf
TRINITY_DN4841_c5_g2:2195	si_s518	TRINITY_DN4841_c5_g2	2184	2205	2195	-24.60	-17.00	0.691056910569106	12	2-8,2204-2198;11-19,2194-2186	1-1,2205-2205[UP5];9-10,2197-2195[AILt];20-21,2185-2184[UP3]	..(((((((((...(((((((.&.)))))))-..)))))))))..	ACGAUUUCGAGGAGGAGGAUAG&AUAUUCUU-AAUUCGAAAUCAU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN4841_c5_g2_2195_TPlot.pdf
TRINITY_DN4843_c0_g1:2129	si_a431	TRINITY_DN4843_c0_g1	2118	2138	2129	-34.50	-22.60	0.655072463768116	10	5-8,2134-2131;10-21,2129-2118	1-4,2138-2135[UP5];9-9,2130-2130[SIL]	((((((((((((.((((....&....)))).))))))))))))	UCAUAUCCAAUGUAUCCAAUC&UAUAGGAUCCGUUGGAUAUGA	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN4843_c0_g1_2129_TPlot.pdf
TRINITY_DN4843_c0_g1:3667	si_s899	TRINITY_DN4843_c0_g1	3656	3676	3667	-28.30	-18.40	0.65017667844523	10	1-12,3676-3665	13-21,3664-3656[UP3]	.........((((((((((((&)))))))))))).........	UACCGACGAUGAAGAGGAAGC&GCUUUCUCUUCAAUUUCAAUU	3	0.999999999999456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4843_c0_g1_3667_TPlot.pdf
TRINITY_DN4843_c0_g1:3672	si_s894	TRINITY_DN4843_c0_g1	3661	3681	3672	-29.10	-19.50	0.670103092783505	13	5-17,3677-3665	1-4,3681-3678[UP5];18-21,3664-3661[UP3]	....(((((((((((((....&....)))))))))))))....	ACGAUGAAGAGGAAGCUGCGG&AAUAGGCUUUCUCUUCAAUUU	3	0.999999585852286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4843_c0_g1_3672_TPlot.pdf
TRINITY_DN4843_c0_g1:3673	si_s893	TRINITY_DN4843_c0_g1	3662	3682	3673	-29.10	-19.50	0.670103092783505	14	6-18,3677-3665	1-5,3682-3678[UP5];19-21,3664-3662[UP3]	...(((((((((((((.....&.....)))))))))))))...	CGAUGAAGAGGAAGCUGCGGC&AAAUAGGCUUUCUCUUCAAUU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4843_c0_g1_3673_TPlot.pdf
TRINITY_DN4843_c0_g1:3674	si_s892	TRINITY_DN4843_c0_g1	3663	3683	3674	-29.50	-19.50	0.661016949152542	15	7-19,3677-3665	1-6,3683-3678[UP5];20-21,3664-3663[UP3]	..(((((((((((((......&......)))))))))))))..	GAUGAAGAGGAAGCUGCGGCC&UAAAUAGGCUUUCUCUUCAAU	4	0.999997970858953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4843_c0_g1_3674_TPlot.pdf
TRINITY_DN4843_c0_g1:3675	si_s891	TRINITY_DN4843_c0_g1	3664	3684	3675	-29.60	-19.50	0.658783783783784	15.5	8-20,3677-3665	1-7,3684-3678[UP5];21-21,3664-3664[UP3]	.(((((((((((((.......&.......))))))))))))).	AUGAAGAGGAAGCUGCGGCCG&AUAAAUAGGCUUUCUCUUCAA	3	0.999992358580222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4843_c0_g1_3675_TPlot.pdf
TRINITY_DN4843_c0_g1:3676	si_s890	TRINITY_DN4843_c0_g1	3665	3685	3676	-29.50	-19.30	0.654237288135593	16.5	9-21,3677-3665	1-8,3685-3678[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGGAAGCUGCGGCCGG&AAUAAAUAGGCUUUCUCUUCA	3	0.999997685495517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4843_c0_g1_3676_TPlot.pdf
TRINITY_DN4843_c0_g1:3697	si_s861	TRINITY_DN4843_c0_g1	3687	3711	3697	-40.10	-27.90	0.695760598503741	15.5	1-6,3711-3706;7-16,3700-3691;18-20,3690-3688	x-x,3705-3701[BULt];17-17,x-x[BULq];21-21,3687-3687[UP3]	.(((-((((((((((.....((((((&))))))-----)))))))))).))).	GGAG-CCGGUGGGUUCGACAUGGGAG&CUCCUA-----GACCUACCGGUCUUA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s861_TRINITY_DN4843_c0_g1_3697_TPlot.pdf
TRINITY_DN4843_c0_g1:3698	si_s860	TRINITY_DN4843_c0_g1	3688	3712	3698	-40.50	-27.70	0.683950617283951	15.5	2-7,3711-3706;8-17,3700-3691;19-21,3690-3688	1-1,3712-3712[UP5];x-x,3705-3701[BULt];18-18,x-x[BULq]	(((-((((((((((.....((((((.&.))))))-----)))))))))).)))	GAG-CCGGUGGGUUCGACAUGGGAGG&ACUCCUA-----GACCUACCGGUCUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s860_TRINITY_DN4843_c0_g1_3698_TPlot.pdf
TRINITY_DN4843_c0_g1:3706	si_s857	TRINITY_DN4843_c0_g1	3690	3718	3706	-42.30	-29.00	0.685579196217494	19	1-4,3718-3715;5-10,3711-3706;11-21,3700-3690	x-x,3714-3712[BULt];x-x,3705-3701[BULt]	(((((((((((.....((((((...((((&))))---))))))-----)))))))))))	GCCGGUGGGUUCGACAUGGGAGGAUUCGA&UCGA---CUCCUA-----GACCUACCGGU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s857_TRINITY_DN4843_c0_g1_3706_TPlot.pdf
TRINITY_DN4843_c0_g1:3707	si_s856	TRINITY_DN4843_c0_g1	3691	3719	3707	-43.30	-31.10	0.71824480369515	18.5	1-5,3719-3715;6-11,3711-3706;12-21,3700-3691	x-x,3714-3712[BULt];x-x,3705-3701[BULt]	((((((((((.....((((((...(((((&)))))---))))))-----))))))))))	CCGGUGGGUUCGACAUGGGAGGAUUCGAC&GUCGA---CUCCUA-----GACCUACCGG	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s856_TRINITY_DN4843_c0_g1_3707_TPlot.pdf
TRINITY_DN4843_c0_g1:3708	si_s855	TRINITY_DN4843_c0_g1	3692	3720	3708	-41.60	-27.50	0.661057692307692	19	2-6,3719-3715;7-12,3711-3706;13-21,3700-3692	1-1,3720-3720[UP5];x-x,3714-3712[BULt];x-x,3705-3701[BULt]	(((((((((.....((((((...(((((.&.)))))---))))))-----)))))))))	CGGUGGGUUCGACAUGGGAGGAUUCGACA&AGUCGA---CUCCUA-----GACCUACCG	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s855_TRINITY_DN4843_c0_g1_3708_TPlot.pdf
TRINITY_DN4843_c0_g1:3739	si_a250	TRINITY_DN4843_c0_g1	3727	3746	3739	-41.50	-27.40	0.660240963855422	9	1-8,3746-3739;11-13,3738-3736;15-21,3733-3727	9-10,x-x[BULq];14-14,3735-3734[AILt]	(((((((..(((--((((((((&))))))))..)))-.)))))))	CCCUCGGCGGCA--UGGGGGGU&AUCCCCCGAUUGU-AUCGAGGG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a250_TRINITY_DN4843_c0_g1_3739_TPlot.pdf
TRINITY_DN4843_c0_g1:3811	si_s87	TRINITY_DN4843_c0_g1	3800	3821	3811	-32.90	-21.40	0.650455927051672	8	2-9,3820-3813;10-11,3811-3810;13-14,3808-3807;16-21,3805-3800	1-1,3821-3821[UP5];x-x,3812-3812[BULt];12-12,3809-3809[SIL];15-15,3806-3806[SIL]	((((((.((.((.((((((((.&.))))))))-)).)).))))))	AAGCGACGAUGACGGAGAGGAU&UUCCUUUCU-UCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4843_c0_g1_3811_TPlot.pdf
TRINITY_DN4843_c0_g1:3822	si_s76	TRINITY_DN4843_c0_g1	3812	3831	3822	-23.60	-16.70	0.707627118644068	10	2-10,3830-3822;13-20,3820-3813	1-1,3831-3831[UP5];11-12,3821-3821[AILq];21-21,3812-3812[UP3]	.((((((((.-(((((((((.&.)))))))))..)))))))).	CGGAGAGGAU-GAAGAAGAGG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4843_c0_g1_3822_TPlot.pdf
TRINITY_DN4843_c0_g1:3823	si_s75	TRINITY_DN4843_c0_g1	3813	3832	3823	-24.00	-16.70	0.695833333333333	10	3-11,3830-3822;14-21,3820-3813	1-2,3832-3831[UP5];12-13,3821-3821[AILq]	((((((((.-(((((((((..&..)))))))))..))))))))	GGAGAGGAU-GAAGAAGAGGC&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4843_c0_g1_3823_TPlot.pdf
TRINITY_DN4843_c0_g1:3824	si_s70	TRINITY_DN4843_c0_g1	3813	3832	3824	-25.80	-17.40	0.674418604651163	8	2-6,3831-3827;8-12,3826-3822;14-21,3820-3813	1-1,3832-3832[UP5];7-7,x-x[BULq];13-13,3821-3821[SIL]	((((((((.(((((-(((((.&.))))).))))).))))))))	GGAGAGGAUGAAGA-AGAGGC&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4843_c0_g1_3824_TPlot.pdf
TRINITY_DN4843_c0_g1:3884	si_a499	TRINITY_DN4843_c0_g1	3874	3893	3884	-35.20	-25.30	0.71875	7.5	1-10,3893-3884;12-17,3883-3878;19-21,3876-3874	11-11,x-x[BULq];18-18,3877-3877[SIL]	(((.((((((-((((((((((&)))))))))).)))))).)))	CCGCGGAAGG-GAAGAGCGGC&GUCGUUUUUCGUCUUCCUUGG	2	0.971901658198758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4843_c0_g1_3884_TPlot.pdf
TRINITY_DN4843_c0_g1:3885	si_a498	TRINITY_DN4843_c0_g1	3875	3894	3885	-33.50	-22.00	0.656716417910448	9.5	2-11,3893-3884;13-18,3883-3878	1-1,3894-3894[UP5];12-12,x-x[BULq];19-21,3877-3875[UP3]	...((((((-((((((((((.&.)))))))))).))))))...	CGCGGAAGG-GAAGAGCGGCG&UGUCGUUUUUCGUCUUCCUUG	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4843_c0_g1_3885_TPlot.pdf
TRINITY_DN4843_c0_g1:3886	si_a497	TRINITY_DN4843_c0_g1	3876	3895	3886	-32.00	-22.00	0.6875	9.5	3-12,3893-3884;14-19,3883-3878	1-2,3895-3894[UP5];13-13,x-x[BULq];20-21,3877-3876[UP3]	..((((((-((((((((((..&..)))))))))).))))))..	GCGGAAGG-GAAGAGCGGCGA&AUGUCGUUUUUCGUCUUCCUU	4	0.999999999816279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4843_c0_g1_3886_TPlot.pdf
TRINITY_DN4843_c0_g1:3887	si_a496	TRINITY_DN4843_c0_g1	3877	3896	3887	-32.40	-22.00	0.679012345679012	10.5	4-13,3893-3884;15-20,3883-3878	1-3,3896-3894[UP5];14-14,x-x[BULq];21-21,3877-3877[UP3]	.((((((-((((((((((...&...)))))))))).)))))).	CGGAAGG-GAAGAGCGGCGAG&UAUGUCGUUUUUCGUCUUCCU	3	0.999999979714884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN4843_c0_g1_3887_TPlot.pdf
TRINITY_DN4843_c0_g1:3888	si_a495	TRINITY_DN4843_c0_g1	3878	3897	3888	-31.90	-21.70	0.68025078369906	11.5	5-14,3893-3884;16-21,3883-3878	1-4,3897-3894[UP5];15-15,x-x[BULq]	((((((-((((((((((....&....)))))))))).))))))	GGAAGG-GAAGAGCGGCGAGC&AUAUGUCGUUUUUCGUCUUCC	3	0.999999718089584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4843_c0_g1_3888_TPlot.pdf
TRINITY_DN48460_c0_g1:183	si_s439	TRINITY_DN48460_c0_g1	167	192	183	-21.50	-16.00	0.744186046511628	7	2-15,191-178;16-21,172-167	1-1,192-192[UP5];x-x,177-173[BULt]	((((((.....((((((((((((((.&.))))))))))))))-----))))))	UGUUGUCUAAAAUGUAAUAUGUAAUA&AAUUACAUAUUAUAU-----AUAACA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN48460_c0_g1_183_TPlot.pdf
TRINITY_DN4846_c0_g1:1367	si_a639	TRINITY_DN4846_c0_g1	1356	1376	1367	-23.60	-15.40	0.652542372881356	11	2-14,1375-1363	1-1,1376-1376[UP5];15-21,1362-1356[UP3]	.......(((((((((((((.&.))))))))))))).......	UCACGCGACUCGAAAGAGUCU&CGAUUUUUUUGAGUAAUAUAU	4	0.999999999850545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN4846_c0_g1_1367_TPlot.pdf
TRINITY_DN4846_c0_g1:1707	si_a500	TRINITY_DN4846_c0_g1	1691	1717	1707	-34.40	-24.30	0.706395348837209	11	1-9,1717-1709;10-16,1707-1701;17-21,1695-1691	x-x,1708-1708[BULt];x-x,1700-1696[BULt]	(((((.....(((((((.(((((((((&)))))))))-)))))))-----)))))	UCCGAGUGAUGGAGGGCGGAGAAGCGA&UCGUUUUUC-GUCUUCC-----UUGGA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN4846_c0_g1_1707_TPlot.pdf
TRINITY_DN4846_c0_g1:1709	si_a498	TRINITY_DN4846_c0_g1	1698	1723	1709	-33.50	-21.90	0.653731343283582	17	2-8,1722-1716;9-18,1710-1701	1-1,1723-1723[UP5];x-x,1715-1711[BULt];19-21,1700-1698[UP3]	...((((((((((.....(((((((.&.)))))))-----))))))))))...	GAUGGAGGGCGGAGAAGCGAACGACC&UGUCGUUU-----UUCGUCUUCCUUG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4846_c0_g1_1709_TPlot.pdf
TRINITY_DN4849_c0_g1:340	si_a506	TRINITY_DN4849_c0_g1	328	349	340	-33.40	-23.10	0.691616766467066	8.5	2-11,348-339;13-13,337-337;14-19,335-330	1-1,349-349[UP5];12-12,338-338[SIL];x-x,336-336[BULt];20-21,329-328[UP3]	..((((((.(.((((((((((.&.)))))))))).)-))))))..	GAGCAUUCGCCGGGAAGACGGU&UUCGUCUUCCUUG-GAAUGUAA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN4849_c0_g1_340_TPlot.pdf
TRINITY_DN4849_c0_g1:341	si_a505	TRINITY_DN4849_c0_g1	329	350	341	-33.30	-23.10	0.693693693693694	8.5	3-12,348-339;14-14,337-337;15-20,335-330	1-2,350-349[UP5];13-13,338-338[SIL];x-x,336-336[BULt];21-21,329-329[UP3]	.((((((.(.((((((((((..&..)))))))))).)-)))))).	AGCAUUCGCCGGGAAGACGGUC&UUUCGUCUUCCUUG-GAAUGUA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN4849_c0_g1_341_TPlot.pdf
TRINITY_DN484_c0_g1:431	si_s513	TRINITY_DN484_c0_g1	420	445	431	-24.90	-17.40	0.698795180722892	14.5	2-8,444-438;9-21,432-420	1-1,445-445[UP5];x-x,437-433[BULt]	(((((((((((((.....(((((((.&.)))))))-----)))))))))))))	UUCGGAUUAGGAAGCAGUUAUGGAGG&AUUCUAUA-----UUCUUAAUUCGAA	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN484_c0_g1_431_TPlot.pdf
TRINITY_DN484_c0_g1:528	si_a794	TRINITY_DN484_c0_g1	516	538	528	-28.60	-18.80	0.657342657342657	8.5	1-5,538-534;6-14,532-524;15-19,522-518	x-x,533-533[BULt];x-x,523-523[BULt];20-21,517-516[UP3]	..(((((.(((((((((.(((((&)))))-)))))))))-)))))..	AGCGGAUAUGGAGGAUACGGAAG&UUUUC-UAUUUUCCA-AUCCGAA	4	0.999988269255955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN484_c0_g1_528_TPlot.pdf
TRINITY_DN484_c0_g1:530	si_a792	TRINITY_DN484_c0_g1	518	540	530	-27.60	-18.70	0.677536231884058	10	3-7,538-534;8-16,532-524;17-21,522-518	1-2,540-539[UP5];x-x,533-533[BULt];x-x,523-523[BULt]	(((((.(((((((((.(((((..&..)))))-)))))))))-)))))	CGGAUAUGGAGGAUACGGAAGCG&AUUUUUC-UAUUUUCCA-AUCCG	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN484_c0_g1_530_TPlot.pdf
TRINITY_DN484_c0_g1:591	si_a794	TRINITY_DN484_c0_g1	579	601	591	-28.60	-18.80	0.657342657342657	8.5	1-5,601-597;6-14,595-587;15-19,585-581	x-x,596-596[BULt];x-x,586-586[BULt];20-21,580-579[UP3]	..(((((.(((((((((.(((((&)))))-)))))))))-)))))..	AGCGGAUAUGGAGGAUACGGAAG&UUUUC-UAUUUUCCA-AUCCGAA	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN484_c0_g1_591_TPlot.pdf
TRINITY_DN484_c0_g1:592	si_a793	TRINITY_DN484_c0_g1	580	602	592	-28.50	-18.90	0.663157894736842	9	2-6,601-597;7-15,595-587;16-20,585-581	1-1,602-602[UP5];x-x,596-596[BULt];x-x,586-586[BULt];21-21,580-580[UP3]	.(((((.(((((((((.(((((.&.)))))-)))))))))-))))).	GCGGAUAUGGAGGAUACGGAAGC&UUUUUC-UAUUUUCCA-AUCCGA	4	0.999988024589162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN484_c0_g1_592_TPlot.pdf
TRINITY_DN484_c0_g1:593	si_a792	TRINITY_DN484_c0_g1	581	603	593	-27.60	-18.70	0.677536231884058	10	3-7,601-597;8-16,595-587;17-21,585-581	1-2,603-602[UP5];x-x,596-596[BULt];x-x,586-586[BULt]	(((((.(((((((((.(((((..&..)))))-)))))))))-)))))	CGGAUAUGGAGGAUACGGAAGCG&AUUUUUC-UAUUUUCCA-AUCCG	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN484_c0_g1_593_TPlot.pdf
TRINITY_DN4852_c0_g1:4712	si_a804	TRINITY_DN4852_c0_g1	4701	4722	4712	-37.20	-24.40	0.655913978494624	8	1-8,4722-4715;9-15,4713-4707	x-x,4714-4714[BULt];16-21,4706-4701[UP3]	......(((((((.((((((((&))))))))-)))))))......	AGGAACUCGCUUCAGGAUUGGA&UCCAAUCC-GAAGCGAAGAAGA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN4852_c0_g1_4712_TPlot.pdf
TRINITY_DN4852_c0_g1:4717	si_a800	TRINITY_DN4852_c0_g1	4705	4726	4717	-33.70	-27.20	0.807121661721068	6	2-12,4725-4715;13-19,4713-4707	1-1,4726-4726[UP5];x-x,4714-4714[BULt];20-21,4706-4705[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	ACUCGCUUCAGGAUUGGAGAAG&AUUUUCCAAUCC-GAAGCGAAG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN4852_c0_g1_4717_TPlot.pdf
TRINITY_DN4852_c0_g1:4723	si_a794	TRINITY_DN4852_c0_g1	4711	4733	4723	-28.60	-19.10	0.667832167832168	9	2-5,4732-4729;8-18,4725-4715;19-21,4713-4711	1-1,4733-4733[UP5];6-7,4728-4726[AILt];x-x,4714-4714[BULt]	(((.(((((((((((...((((.&.))))-..)))))))))))-)))	UUCAGGAUUGGAGAAGAUGAAAG&UUUUC-UAUUUUCCAAUCC-GAA	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN4852_c0_g1_4723_TPlot.pdf
TRINITY_DN4852_c0_g1:4724	si_a793	TRINITY_DN4852_c0_g1	4713	4734	4724	-28.50	-19.90	0.698245614035088	10	1-6,4734-4729;9-19,4725-4715	7-8,4728-4726[AILt];20-21,4714-4713[UP3]	..(((((((((((...((((((&))))))-..)))))))))))..	CAGGAUUGGAGAAGAUGAAAGA&UUUUUC-UAUUUUCCAAUCCGA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN4852_c0_g1_4724_TPlot.pdf
TRINITY_DN4852_c0_g1:4727	si_a790	TRINITY_DN4852_c0_g1	4716	4737	4727	-25.80	-17.20	0.666666666666667	10.5	3-9,4735-4729;12-21,4725-4716	1-2,4737-4736[UP5];10-11,4728-4726[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	GAUUGGAGAAGAUGAAAGAUCU&CUAUUUUUC-UAUUUUCCAAUC	4	0.999999198518655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN4852_c0_g1_4727_TPlot.pdf
TRINITY_DN4852_c0_g1:7031	si_a510	TRINITY_DN4852_c0_g1	7017	7040	7031	-37.00	-24.80	0.67027027027027	10	1-14,7040-7027;18-21,7020-7017	15-17,7026-7021[AILt]	((((......((((((((((((((&))))))))))))))---...))))	UGCCAAGGCUCGUUCCGAGGGGGA&UCUUCCUUGGAAUG---UAAGGCG	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN4852_c0_g1_7031_TPlot.pdf
TRINITY_DN4852_c0_g1:7032	si_a509	TRINITY_DN4852_c0_g1	7018	7041	7032	-37.30	-25.40	0.680965147453083	10	1-15,7041-7027;19-21,7020-7018	16-18,7026-7021[AILt]	(((......(((((((((((((((&)))))))))))))))---...)))	GCCAAGGCUCGUUCCGAGGGGGAU&GUCUUCCUUGGAAUG---UAAGGC	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN4852_c0_g1_7032_TPlot.pdf
TRINITY_DN4852_c0_g1:7033	si_a508	TRINITY_DN4852_c0_g1	7019	7042	7033	-36.30	-25.10	0.691460055096419	10.5	1-16,7042-7027;20-21,7020-7019	17-19,7026-7021[AILt]	((......((((((((((((((((&))))))))))))))))---...))	CCAAGGCUCGUUCCGAGGGGGAUG&CGUCUUCCUUGGAAUG---UAAGG	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN4852_c0_g1_7033_TPlot.pdf
TRINITY_DN48539_c0_g1:188	si_a784	TRINITY_DN48539_c0_g1	177	198	188	-24.70	-17.40	0.704453441295547	7.5	3-8,196-191;9-20,189-178	1-2,198-197[UP5];x-x,190-190[BULt];21-21,177-177[UP3]	.((((((((((((.((((((..&..))))))-)))))))))))).	UGAAUGGAGAAAUAAGAAGAAA&ACUCUUCU-AUUUUUCUAUUUU	2	0.999984728444997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN48539_c0_g1_188_TPlot.pdf
TRINITY_DN4854_c0_g1:2402	si_s485	TRINITY_DN4854_c0_g1	2391	2411	2402	-18.10	-12.90	0.712707182320442	7.5	2-17,2410-2395	1-1,2411-2411[UP5];18-21,2394-2391[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUCUGUUUGAAUAAGUAUAU&CUAUAUUUAUUUAAAUAUAAA	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN4854_c0_g1_2402_TPlot.pdf
TRINITY_DN48560_c0_g1:26	si_s75	TRINITY_DN48560_c0_g1	16	35	26	-24.00	-15.70	0.654166666666667	5.5	1-13,35-23;15-19,22-18	14-14,x-x[BULq];20-21,17-16[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AAAAAGG-AAGAGAGAAAAUG&UAUUUUUUUUCUUUCCUUUCU	0	0.932091688335958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN48560_c0_g1_26_TPlot.pdf
TRINITY_DN48560_c0_g1:30	si_s73	TRINITY_DN48560_c0_g1	18	40	30	-24.00	-17.00	0.708333333333333	6.5	2-6,39-35;7-16,33-24;17-21,22-18	1-1,40-40[UP5];x-x,34-34[BULt];x-x,23-23[BULt]	(((((.((((((((((.(((((.&.)))))-))))))))))-)))))	AAAGGAAGAGAGAAAAUGAUAGG&UCUAUU-UUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN48560_c0_g1_30_TPlot.pdf
TRINITY_DN48560_c0_g1:31	si_a787	TRINITY_DN48560_c0_g1	20	42	31	-26.30	-18.30	0.695817490494297	8.5	1-8,42-35;9-13,32-28;15-20,26-21	x-x,34-33[BULt];14-14,27-27[SIL];21-21,20-20[UP3]	.((((((.(((((..((((((((&))))))))--))))).)))))).	AGGAAGAGAGAAAAUGAUAGGAG&CUUCUAUU--UUUCUAUUUUCCA	2	0.999983747890884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN48560_c0_g1_31_TPlot.pdf
TRINITY_DN48560_c0_g1:32	si_a786	TRINITY_DN48560_c0_g1	21	43	32	-26.60	-19.40	0.729323308270677	7.5	1-9,43-35;10-14,32-28;16-21,26-21	x-x,34-33[BULt];15-15,27-27[SIL]	((((((.(((((..(((((((((&)))))))))--))))).))))))	GGAAGAGAGAAAAUGAUAGGAGA&UCUUCUAUU--UUUCUAUUUUCC	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN48560_c0_g1_32_TPlot.pdf
TRINITY_DN48560_c0_g1:33	si_s70	TRINITY_DN48560_c0_g1	21	43	33	-25.80	-18.40	0.713178294573643	7	2-9,42-35;10-19,33-24;20-21,22-21	1-1,43-43[UP5];x-x,34-34[BULt];x-x,23-23[BULt]	((.((((((((((.((((((((.&.))))))))-))))))))))-))	GGAAGAGAGAAAAUGAUAGGAGA&ACUUCUAUU-UUUUUUCUUU-CC	2	0.999994215439769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN48560_c0_g1_33_TPlot.pdf
TRINITY_DN48560_c0_g1:36	si_s68	TRINITY_DN48560_c0_g1	24	45	36	-23.10	-15.70	0.67965367965368	10	4-11,42-35;12-21,33-24	1-3,45-43[UP5];x-x,34-34[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	AGAGAGAAAAUGAUAGGAGAAU&CAACUUCUAUU-UUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN48560_c0_g1_36_TPlot.pdf
TRINITY_DN4856_c0_g1:1990	si_a495	TRINITY_DN4856_c0_g1	1979	1999	1990	-31.90	-24.30	0.761755485893417	8.5	2-4,1998-1996;6-14,1994-1986;16-21,1984-1979	1-1,1999-1999[UP5];5-5,1995-1995[SIL];15-15,1985-1985[SIL]	((((((.(((((((((.(((.&.))).))))))))).))))))	GGGAGAGGAAGAACGGGGUGG&AUAUGUCGUUUUUCGUCUUCC	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4856_c0_g1_1990_TPlot.pdf
TRINITY_DN4856_c0_g1:2887	si_a604	TRINITY_DN4856_c0_g1	2876	2895	2887	-31.60	-20.60	0.651898734177215	12	4-8,2892-2888;11-21,2886-2876	1-3,2895-2893[UP5];9-10,2887-2887[AILq]	(((((((((((.-(((((...&...)))))..)))))))))))	GUCGAUUGGGAA-GUGAGCUG&AUUUUCGCAAUUCCAAUCGAC	1	0.0560259787859287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN4856_c0_g1_2887_TPlot.pdf
TRINITY_DN4859_c0_g1:378	si_s491	TRINITY_DN4859_c0_g1	367	387	378	-19.50	-13.70	0.702564102564103	7	2-16,386-372	1-1,387-387[UP5];17-21,371-367[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCAUGGUUUAUGUUUAAAUAU&UUAUUUAAAUAUAAACAAAAC	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN4859_c0_g1_378_TPlot.pdf
TRINITY_DN4859_c1_g2:546	si_s887	TRINITY_DN4859_c1_g2	526	555	546	-26.80	-18.70	0.697761194029851	22	3-10,553-546;11-21,536-526	1-2,555-554[UP5];x-x,545-537[BULt]	(((((((((((.........((((((((..&..))))))))---------)))))))))))	AGAGAAAGCCUUUCCAGUAAAUUUGUUUGA&AAAAAUAAAU---------AGGCUUUCUCU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4859_c1_g2_546_TPlot.pdf
TRINITY_DN48622_c0_g1:2232	si_a189	TRINITY_DN48622_c0_g1	2219	2240	2232	-32.10	-21.40	0.666666666666667	5.5	1-7,2240-2234;9-14,2233-2228;15-20,2225-2220	8-8,x-x[BULq];x-x,2227-2226[BULt];21-21,2219-2219[UP3]	.((((((..((((((-(((((((&))))))).))))))--)))))).	GUAGUGAAAAUAGGG-AAGAUAU&AUAUCUUUCCCUGU--UCACUAA	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN48622_c0_g1_2232_TPlot.pdf
TRINITY_DN48622_c0_g1:2233	si_a188	TRINITY_DN48622_c0_g1	2220	2241	2233	-32.00	-21.40	0.66875	5.5	2-8,2240-2234;10-15,2233-2228;16-21,2225-2220	1-1,2241-2241[UP5];9-9,x-x[BULq];x-x,2227-2226[BULt]	((((((..((((((-(((((((.&.))))))).))))))--))))))	UAGUGAAAAUAGGG-AAGAUAUA&AAUAUCUUUCCCUGU--UCACUA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN48622_c0_g1_2233_TPlot.pdf
TRINITY_DN48622_c0_g1:2494	si_a784	TRINITY_DN48622_c0_g1	2483	2504	2494	-24.70	-17.00	0.688259109311741	7.5	2-6,2503-2499;7-17,2497-2487	1-1,2504-2504[UP5];x-x,2498-2498[BULt];18-21,2486-2483[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	AGGUUGGAAAAAUAGCAAGAGA&ACUCUU-CUAUUUUUCUAUUUU	2	0.999999865143578	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN48622_c0_g1_2494_TPlot.pdf
TRINITY_DN48622_c0_g1:2533	si_s511	TRINITY_DN48622_c0_g1	2522	2543	2533	-25.50	-16.60	0.650980392156863	7	1-6,2543-2538;7-13,2536-2530;15-20,2528-2523	x-x,2537-2537[BULt];14-14,2529-2529[SIL];21-21,2522-2522[UP3]	.((((((.(((((((.((((((&))))))-))))))).)))))).	AGAAUUAUGAAUGUGUGGAUUG&CAAUUC-UAUAUUCUUAAUUCG	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN48622_c0_g1_2533_TPlot.pdf
TRINITY_DN48622_c0_g1:3116	si_a451	TRINITY_DN48622_c0_g1	3105	3125	3116	-23.60	-16.10	0.682203389830509	10	2-6,3124-3120;8-18,3118-3108	1-1,3125-3125[UP5];7-7,3119-3119[SIL];19-21,3107-3105[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	UGAAUGUAGCGGCGUUUAUCA&AGAUAAUUGUUGUUAUAUAUA	4	0.996910853773391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN48622_c0_g1_3116_TPlot.pdf
TRINITY_DN48624_c0_g1:4278	si_a496	TRINITY_DN48624_c0_g1	4266	4287	4278	-32.40	-22.70	0.700617283950617	10.5	4-19,4284-4269;20-21,4267-4266	1-3,4287-4285[UP5];x-x,4268-4268[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	GGCGGAGGCGGAAAGCGAUUGG&UAUGUCGUUUUUCGUCUUC-CU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN48624_c0_g1_4278_TPlot.pdf
TRINITY_DN48624_c0_g1:5042	si_s474	TRINITY_DN48624_c0_g1	5031	5051	5042	-31.80	-20.80	0.654088050314465	11	2-12,5050-5040	1-1,5051-5051[UP5];13-21,5039-5031[UP3]	.........(((((((((((.&.))))))))))).........	AAUGGAGACGGGUCCGUUGGU&UCCAACGGAUCCUAUAUUUAU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN48624_c0_g1_5042_TPlot.pdf
TRINITY_DN48624_c0_g1:5045	si_s471	TRINITY_DN48624_c0_g1	5034	5054	5045	-32.00	-20.80	0.65	13.5	5-15,5050-5040	1-4,5054-5051[UP5];16-21,5039-5034[UP3]	......(((((((((((....&....)))))))))))......	GGAGACGGGUCCGUUGGUAGC&AUAUCCAACGGAUCCUAUAUU	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN48624_c0_g1_5045_TPlot.pdf
TRINITY_DN48627_c0_g1:1485	si_a636	TRINITY_DN48627_c0_g1	1474	1495	1485	-26.30	-17.10	0.650190114068441	12.5	2-9,1494-1487;12-18,1483-1477	1-1,1495-1495[UP5];10-11,1486-1484[AILt];19-21,1476-1474[UP3]	...(((((((...((((((((.&.))))))))-..)))))))...	GGGUGCUCAACGUGAAUCGGCG&UGUCGAUUU-UUUUGAGUAAUA	3	0.999999999994959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN48627_c0_g1_1485_TPlot.pdf
TRINITY_DN48627_c0_g1:17	si_s21	TRINITY_DN48627_c0_g1	6	26	17	-27.40	-18.40	0.671532846715328	4.5	1-16,26-11;18-21,9-6	17-17,10-10[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UUUAAUUGUAGUUAAUGUAGU&ACUAUAUUGAUUGCAACUAAA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN48627_c0_g1_17_TPlot.pdf
TRINITY_DN48627_c0_g1:629	si_a784	TRINITY_DN48627_c0_g1	618	638	629	-24.70	-16.70	0.676113360323887	8	1-14,638-625	15-21,624-618[UP3]	.......((((((((((((((&)))))))))))))).......	UAAAAAAAAGAAUAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999999996776828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN48627_c0_g1_629_TPlot.pdf
TRINITY_DN48627_c0_g1:630	si_a783	TRINITY_DN48627_c0_g1	619	639	630	-24.70	-16.90	0.684210526315789	7.5	2-15,638-625	1-1,639-639[UP5];16-21,624-619[UP3]	......((((((((((((((.&.))))))))))))))......	AAAAAAAAGAAUAGAAGAGUA&AACUCUUCUAUUUUUCUAUUU	3	0.999999999968825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN48627_c0_g1_630_TPlot.pdf
TRINITY_DN48627_c0_g1:787	si_a899	TRINITY_DN48627_c0_g1	776	800	787	-18.70	-12.20	0.652406417112299	11	1-7,800-794;8-21,789-776	x-x,793-790[BULt]	((((((((((((((....(((((((&)))))))----))))))))))))))	UUUUUAUAUUAUUUUUUAGUUGUUA&UAAUAAU----AAGUAAUAUAAAAA	4	0.999871397437328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN48627_c0_g1_787_TPlot.pdf
TRINITY_DN48627_c0_g1:825	si_a454	TRINITY_DN48627_c0_g1	814	834	825	-21.30	-13.90	0.652582159624413	8	1-5,834-830;7-14,828-821;16-20,819-815	6-6,829-829[SIL];15-15,820-820[SIL];21-21,814-814[UP3]	.(((((.((((((((.(((((&))))).)))))))).))))).	GAUUAUUUGUGGCAAGGAUUG&UAAUUGUUGUUAUAUAUAAUA	3	0.999999994981852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN48627_c0_g1_825_TPlot.pdf
TRINITY_DN48641_c0_g1:1048	si_a547	TRINITY_DN48641_c0_g1	1037	1057	1048	-26.90	-17.70	0.657992565055762	9.5	1-8,1057-1050;11-18,1047-1040	9-10,1049-1048[SIL];19-21,1039-1037[UP3]	...((((((((..((((((((&))))))))..))))))))...	AUUUGAAGAGGGUGAUUGAAC&GUUCAAUCUAUUUCUUUAUCU	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN48641_c0_g1_1048_TPlot.pdf
TRINITY_DN48641_c0_g1:1172	si_a17	TRINITY_DN48641_c0_g1	1161	1181	1172	-24.30	-17.30	0.711934156378601	11	3-7,1179-1175;10-20,1172-1162	1-2,1181-1180[UP5];8-9,1174-1173[SIL];21-21,1161-1161[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	UGCUAAAGAUGAUGAGGUUGA&AAAGCCUAUUUAUUUUUAGUU	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN48641_c0_g1_1172_TPlot.pdf
TRINITY_DN48641_c0_g1:2400	si_a546	TRINITY_DN48641_c0_g1	2389	2410	2400	-28.60	-18.72	0.654545454545454	11	1-4,2410-2407;8-21,2402-2389	5-7,2406-2403[AILt]	((((((((((((((....((((&))))-...))))))))))))))	GAUGAAGAAGUAGAGGAAGACU&GGUU-CAAUCUAUUUCUUUAUC	2	0.995866999552873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN48641_c0_g1_2400_TPlot.pdf
TRINITY_DN48643_c3_g1:1585	si_a763	TRINITY_DN48643_c3_g1	1574	1594	1585	-28.80	-20.20	0.701388888888889	6.5	2-5,1593-1590;8-21,1587-1574	1-1,1594-1594[UP5];6-7,1589-1588[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	UGAAUUAAUCAAAAAACCAGU&UUUGGGUUUUUGAUUGAUUCA	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN48643_c3_g1_1585_TPlot.pdf
TRINITY_DN48643_c3_g1:3454	si_s809	TRINITY_DN48643_c3_g1	3443	3463	3454	-28.50	-18.90	0.663157894736842	9	1-13,3463-3451	14-21,3450-3443[UP3]	........(((((((((((((&)))))))))))))........	CAAAAAACAAGGUAACGGAGA&UCUUCGUUACCUUUUCUUAAU	4	0.999999999325556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN48643_c3_g1_3454_TPlot.pdf
TRINITY_DN4865_c0_g1:1124	si_s811	TRINITY_DN4865_c0_g1	1113	1133	1124	-26.40	-17.20	0.651515151515151	6	1-13,1133-1121;15-17,1119-1117	14-14,1120-1120[SIL];18-21,1116-1113[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UAAAUAACAAAAGGUAGCGAA&UUCGUUACCUUUUCUUAAUAA	4	0.99999999887003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4865_c0_g1_1124_TPlot.pdf
TRINITY_DN48660_c0_g1:316	si_a349	TRINITY_DN48660_c0_g1	305	325	316	-21.30	-15.30	0.71830985915493	9.5	5-20,321-306	1-4,325-322[UP5];21-21,305-305[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAGAUAGAAUUAAUGUAAUU&GAAAAUAUUAAUUCUAUUUUG	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN48660_c0_g1_316_TPlot.pdf
TRINITY_DN48662_c0_g1:2137	si_a496	TRINITY_DN48662_c0_g1	2126	2151	2137	-32.40	-23.20	0.716049382716049	15.5	3-9,2149-2143;10-21,2137-2126	1-2,2151-2150[UP5];x-x,2142-2138[BULt]	((((((((((((.....(((((((..&..)))))))-----))))))))))))	AGGAAGAUGAAAUGGAUGACGACGCG&UAUGUCGUU-----UUUCGUCUUCCU	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN48662_c0_g1_2137_TPlot.pdf
TRINITY_DN48662_c0_g1:920	si_s274	TRINITY_DN48662_c0_g1	911	929	920	-30.20	-21.20	0.701986754966887	11	5-12,925-918;15-21,917-911	1-4,929-926[UP5];13-14,x-x[BULq]	(((((((--((((((((....&....))))))))..)))))))	GGGCGUG--GUGUCGAUGGCA&AAAAAUCGACAUAAUACGCCU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s274_TRINITY_DN48662_c0_g1_920_TPlot.pdf
TRINITY_DN48662_c0_g1:921	si_s273	TRINITY_DN48662_c0_g1	912	930	921	-29.50	-20.00	0.677966101694915	12	6-13,925-918;16-21,917-912	1-5,930-926[UP5];14-15,x-x[BULq]	((((((--((((((((.....&.....))))))))..))))))	GGCGUG--GUGUCGAUGGCAA&AAAAAAUCGACAUAAUACGCC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s273_TRINITY_DN48662_c0_g1_921_TPlot.pdf
TRINITY_DN48663_c0_g1:757	si_a412	TRINITY_DN48663_c0_g1	746	766	757	-18.30	-11.90	0.650273224043716	10	1-14,766-753	15-21,752-746[UP3]	.......((((((((((((((&)))))))))))))).......	UGGAUAGUUGAAUAUGGACAA&UUGUUUAUAUUUAAAUAAAUA	4	0.999999985686521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN48663_c0_g1_757_TPlot.pdf
TRINITY_DN48663_c0_g1:759	si_a410	TRINITY_DN48663_c0_g1	748	768	759	-17.80	-12.00	0.674157303370786	10.5	3-16,766-753	1-2,768-767[UP5];17-21,752-748[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAUAGUUGAAUAUGGACAACC&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999998727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN48663_c0_g1_759_TPlot.pdf
TRINITY_DN48663_c0_g1:835	si_s47	TRINITY_DN48663_c0_g1	824	845	835	-26.30	-17.90	0.680608365019011	10.5	4-8,842-838;9-20,836-825	1-3,845-843[UP5];x-x,837-837[BULt];21-21,824-824[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	AUAGCUUGAAGUCACAGUUCAC&AAUAAUUG-GAUUUCAAGUUAG	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN48663_c0_g1_835_TPlot.pdf
TRINITY_DN48663_c0_g1:836	si_s46	TRINITY_DN48663_c0_g1	825	846	836	-25.00	-17.70	0.708	11.5	5-9,842-838;10-21,836-825	1-4,846-843[UP5];x-x,837-837[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	UAGCUUGAAGUCACAGUUCACU&UAAUAAUUG-GAUUUCAAGUUA	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN48663_c0_g1_836_TPlot.pdf
TRINITY_DN48664_c0_g1:508	si_a194	TRINITY_DN48664_c0_g1	495	517	508	-29.40	-19.60	0.666666666666667	6.5	1-10,517-508;11-12,506-505;13-15,503-501;17-21,499-495	x-x,507-507[BULt];x-x,504-504[BULt];16-16,500-500[SIL]	(((((.(((.((.((((((((((&))))))))))-))-))).)))))	GUUUAGUAGAUGCAACAGGGAGA&UUUCCCUGUU-CA-CUAAUAAAU	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN48664_c0_g1_508_TPlot.pdf
TRINITY_DN48665_c0_g1:101	si_a340	TRINITY_DN48665_c0_g1	90	111	101	-30.20	-19.70	0.652317880794702	10	1-8,111-104;9-11,102-100;14-21,97-90	x-x,103-103[BULt];12-13,99-98[SIL]	((((((((..(((.((((((((&))))))))-)))..))))))))	GUUGGUGUACUUGUGGGCAGGG&CCUUGUCC-CGAAAAUAUUAAU	2	0.959183148261139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a340_TRINITY_DN48665_c0_g1_101_TPlot.pdf
TRINITY_DN48665_c0_g1:213	si_a760	TRINITY_DN48665_c0_g1	202	221	213	-31.10	-21.40	0.688102893890675	10	1-9,221-213;15-20,208-203	10-14,212-209[AILq];21-21,202-202[UP3]	.((((((....-(((((((((&))))))))).....)))))).	UUCAAUCUGCU-CCCGAAGGA&UCCUUUGGGUUUUUGAUUGAU	2	0.994497155904433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN48665_c0_g1_213_TPlot.pdf
TRINITY_DN48665_c0_g1:369	si_a667	TRINITY_DN48665_c0_g1	357	378	369	-32.10	-21.50	0.669781931464174	9.5	2-10,377-369;12-15,367-364;18-20,360-358	1-1,378-378[UP5];11-11,368-368[SIL];16-17,363-361[AILt];21-21,357-357[UP3]	.(((...((((.(((((((((.&.))))))))).))))-..))).	CGAAGCCGGGACUCAGUGGGCG&UGCCUAUUGAUUCCU-UAUUCA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN48665_c0_g1_369_TPlot.pdf
TRINITY_DN48665_c0_g1:370	si_a666	TRINITY_DN48665_c0_g1	358	379	370	-31.60	-21.10	0.667721518987342	10.5	3-11,377-369;13-16,367-364;19-21,360-358	1-2,379-378[UP5];12-12,368-368[SIL];17-18,363-361[AILt]	(((...((((.(((((((((..&..))))))))).))))-..)))	GAAGCCGGGACUCAGUGGGCGG&AUGCCUAUUGAUUCCU-UAUUC	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN48665_c0_g1_370_TPlot.pdf
TRINITY_DN48665_c0_g1:59	si_s378	TRINITY_DN48665_c0_g1	48	68	59	-43.80	-33.10	0.755707762557078	9	2-7,67-62;9-9,60-60;11-20,58-49	1-1,68-68[UP5];8-8,61-61[SIL];10-10,59-59[SIL];21-21,48-48[UP3]	.((((((((((.(.((((((.&.)))))).).)))))))))).	CGUGGGGCGGGGAGGCGGGCC&CGCUCGCGUGUCCGCCUUACA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN48665_c0_g1_59_TPlot.pdf
TRINITY_DN48665_c0_g1:61	si_s376	TRINITY_DN48665_c0_g1	50	70	61	-42.50	-29.50	0.694117647058824	11.5	4-9,67-62;11-11,60-60;13-21,58-50	1-3,70-68[UP5];10-10,61-61[SIL];12-12,59-59[SIL]	(((((((((.(.((((((...&...)))))).).)))))))))	UGGGGCGGGGAGGCGGGCCUG&AUCGCUCGCGUGUCCGCCUUA	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN48665_c0_g1_61_TPlot.pdf
TRINITY_DN4866_c0_g1:572	si_s316	TRINITY_DN4866_c0_g1	561	582	572	-31.50	-21.70	0.688888888888889	9.5	2-3,581-580;5-18,577-564	1-1,582-582[UP5];4-4,579-578[AILt];19-21,563-561[UP3]	...((((((((((((((..((.&.))-.))))))))))))))...	UUGGUAACGAGAAGGAUUCGAU&UUC-UGUCCUUCUUGUUACAAA	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN4866_c0_g1_572_TPlot.pdf
TRINITY_DN4866_c0_g1:573	si_s315	TRINITY_DN4866_c0_g1	562	583	573	-31.60	-21.70	0.686708860759494	10.5	3-4,581-580;6-19,577-564	1-2,583-582[UP5];5-5,579-578[AILt];20-21,563-562[UP3]	..((((((((((((((..((..&..))-.))))))))))))))..	UGGUAACGAGAAGGAUUCGAUC&AUUC-UGUCCUUCUUGUUACAA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN4866_c0_g1_573_TPlot.pdf
TRINITY_DN4866_c0_g1:574	si_s314	TRINITY_DN4866_c0_g1	563	584	574	-31.50	-21.70	0.688888888888889	11.5	4-5,581-580;7-20,577-564	1-3,584-582[UP5];6-6,579-578[AILt];21-21,563-563[UP3]	.((((((((((((((..((...&...))-.)))))))))))))).	GGUAACGAGAAGGAUUCGAUCG&AAUUC-UGUCCUUCUUGUUACA	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN4866_c0_g1_574_TPlot.pdf
TRINITY_DN48683_c0_g1:1372	si_a548	TRINITY_DN48683_c0_g1	1361	1381	1372	-27.20	-21.60	0.794117647058824	7.5	3-19,1379-1363	1-2,1381-1380[UP5];20-21,1362-1361[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUGAUGAAGAGAUGGAUUGUA&UUCAAUCUAUUUCUUUAUCUC	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN48683_c0_g1_1372_TPlot.pdf
TRINITY_DN4868_c0_g1:594	si_s569	TRINITY_DN4868_c0_g1	583	603	594	-30.60	-21.00	0.686274509803922	9	1-13,603-591	14-21,590-583[UP3]	........(((((((((((((&)))))))))))))........	UUUCAGUGUCCUUGUCUCGAA&UUCGGGACAAGGAAUAAAAAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN4868_c0_g1_594_TPlot.pdf
TRINITY_DN48692_c0_g1:1093	si_a496	TRINITY_DN48692_c0_g1	1080	1102	1093	-32.40	-24.00	0.740740740740741	10.5	3-17,1100-1086;18-21,1083-1080	1-2,1102-1101[UP5];x-x,1085-1084[BULt]	((((..(((((((((((((((..&..)))))))))))))))--))))	AGGACGAGGCGGAGGGCGACGCA&UAUGUCGUUUUUCGUCU--UCCU	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN48692_c0_g1_1093_TPlot.pdf
TRINITY_DN48692_c0_g1:1094	si_a495	TRINITY_DN48692_c0_g1	1081	1103	1094	-31.90	-22.70	0.711598746081505	12	4-18,1100-1086;19-21,1083-1081	1-3,1103-1101[UP5];x-x,1085-1084[BULt]	(((..(((((((((((((((...&...)))))))))))))))--)))	GGACGAGGCGGAGGGCGACGCAG&AUAUGUCGUUUUUCGUCU--UCC	2	0.978364371173897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN48692_c0_g1_1094_TPlot.pdf
TRINITY_DN48692_c0_g1:311	si_s64	TRINITY_DN48692_c0_g1	296	320	311	-24.10	-16.00	0.663900414937759	15	2-12,319-309;13-19,304-298	1-1,320-320[UP5];x-x,308-305[BULt];20-21,297-296[UP3]	..(((((((....(((((((((((.&.)))))))))))----)))))))..	GCAAGAAGUUAAAGGGAGUUGCUGC&UUAGCAACUUCU----AUUUUUUUU	3	0.999999999973486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN48692_c0_g1_311_TPlot.pdf
TRINITY_DN48692_c0_g1:922	si_a511	TRINITY_DN48692_c0_g1	906	934	922	-38.40	-26.70	0.6953125	20	1-6,934-929;7-10,925-922;11-21,916-906	x-x,928-926[BULt];x-x,921-917[BULt]	(((((((((((.....((((...((((((&))))))---))))-----)))))))))))	CUGCCUUGCGUGGGCUUCCACUUGGGAGG&CUUCCU---UGGA-----AUGUAAGGCGG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN48692_c0_g1_922_TPlot.pdf
TRINITY_DN48692_c0_g1:924	si_a509	TRINITY_DN48692_c0_g1	908	936	924	-37.30	-24.50	0.656836461126005	20	2-8,935-929;9-12,925-922;13-21,916-908	1-1,936-936[UP5];x-x,928-926[BULt];x-x,921-917[BULt]	(((((((((.....((((...(((((((.&.)))))))---))))-----)))))))))	GCCUUGCGUGGGCUUCCACUUGGGAGGAG&GUCUUCCU---UGGA-----AUGUAAGGC	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN48692_c0_g1_924_TPlot.pdf
TRINITY_DN4869_c0_g1:1693	si_s69	TRINITY_DN4869_c0_g1	1681	1702	1693	-23.40	-15.60	0.666666666666667	9	3-8,1700-1695;10-16,1693-1687;17-21,1685-1681	1-2,1702-1701[UP5];9-9,1694-1694[SIL];x-x,1686-1686[BULt]	(((((.(((((((.((((((..&..)))))).)))))))-)))))	GAAGGCAAAGAAAUUGGAGGGA&AACUUCUAUUUUUUUU-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4869_c0_g1_1693_TPlot.pdf
TRINITY_DN4869_c0_g1:1697	si_s899	TRINITY_DN4869_c0_g1	1686	1706	1697	-28.30	-19.00	0.671378091872792	10	3-17,1704-1690	1-2,1706-1705[UP5];18-21,1689-1686[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAAAGAAAUUGGAGGGAGAAG&GCUUUCUCUUCAAUUUCAAUU	4	0.999999967983427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4869_c0_g1_1697_TPlot.pdf
TRINITY_DN486_c0_g1:215	si_a457	TRINITY_DN486_c0_g1	204	224	215	-23.50	-16.90	0.719148936170213	5.5	1-9,224-216;11-20,214-205	10-10,215-215[SIL];21-21,204-204[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UCAUGUUGUAUUUAAUAACAG&UUGUUGUUAUAUAUAAUAUGU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN486_c0_g1_215_TPlot.pdf
TRINITY_DN486_c0_g1:2316	si_s897	TRINITY_DN486_c0_g1	2305	2328	2316	-31.30	-20.40	0.651757188498402	12.5	2-6,2327-2323;7-17,2319-2309	1-1,2328-2328[UP5];x-x,2322-2320[BULt];18-21,2308-2305[UP3]	....(((((((((((...(((((.&.)))))---)))))))))))....	UACCGAUUGAGGAGAUUGAAGCCA&AGGCUU---UCUCUUCAAUUUCAA	4	0.999999986265417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN486_c0_g1_2316_TPlot.pdf
TRINITY_DN486_c0_g1:2318	si_s895	TRINITY_DN486_c0_g1	2307	2330	2318	-31.10	-20.40	0.655948553054662	14	4-8,2327-2323;9-19,2319-2309	1-3,2330-2328[UP5];x-x,2322-2320[BULt];20-21,2308-2307[UP3]	..(((((((((((...(((((...&...)))))---)))))))))))..	CCGAUUGAGGAGAUUGAAGCCAUC&AUAGGCUU---UCUCUUCAAUUUC	3	0.999999284624946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN486_c0_g1_2318_TPlot.pdf
TRINITY_DN486_c0_g1:2319	si_s894	TRINITY_DN486_c0_g1	2308	2331	2319	-29.10	-20.40	0.701030927835051	15	5-9,2327-2323;10-20,2319-2309	1-4,2331-2328[UP5];x-x,2322-2320[BULt];21-21,2308-2308[UP3]	.(((((((((((...(((((....&....)))))---))))))))))).	CGAUUGAGGAGAUUGAAGCCAUCG&AAUAGGCUU---UCUCUUCAAUUU	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN486_c0_g1_2319_TPlot.pdf
TRINITY_DN486_c0_g1:2323	si_s893	TRINITY_DN486_c0_g1	2309	2332	2323	-29.10	-20.40	0.701030927835051	16	6-10,2327-2323;11-21,2319-2309	1-5,2332-2328[UP5];x-x,2322-2320[BULt]	(((((((((((...(((((.....&.....)))))---)))))))))))	GAUUGAGGAGAUUGAAGCCAUCGU&AAAUAGGCUU---UCUCUUCAAUU	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN486_c0_g1_2323_TPlot.pdf
TRINITY_DN486_c0_g1:2971	si_s206	TRINITY_DN486_c0_g1	2956	2981	2971	-33.00	-21.80	0.660606060606061	16.5	3-5,2979-2977;6-12,2975-2969;13-20,2964-2957	1-2,2981-2980[UP5];x-x,2976-2976[BULt];x-x,2968-2965[BULt];21-21,2956-2956[UP3]	.((((((((....(((((((.(((..&..)))-)))))))----)))))))).	CUCGAGCACCCUGAGCUGGUCGCAGA&AAUGU-ACCAGUU----GUGUUCGAA	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN486_c0_g1_2971_TPlot.pdf
TRINITY_DN486_c0_g1:3397	si_a27	TRINITY_DN486_c0_g1	3386	3406	3397	-30.30	-20.40	0.673267326732673	11	4-13,3403-3394;16-21,3391-3386	1-3,3406-3404[UP5];14-15,3393-3392[SIL]	((((((..((((((((((...&...))))))))))..))))))	CUGGUCCAGGAGCUGGAACAA&UAUUUUUAGUUCUAAGACCGG	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN486_c0_g1_3397_TPlot.pdf
TRINITY_DN48703_c0_g1:2339	si_a140	TRINITY_DN48703_c0_g1	2323	2348	2339	-25.20	-19.10	0.757936507936508	15.5	1-10,2348-2339;11-21,2333-2323	x-x,2338-2334[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	GAAGCGGCGGCGCUAGGAUUGAUUGC&GUAAUUAAUC-----GUUGUUGUUUU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN48703_c0_g1_2339_TPlot.pdf
TRINITY_DN48703_c0_g1:2340	si_a139	TRINITY_DN48703_c0_g1	2324	2349	2340	-25.90	-18.10	0.698841698841699	15.5	2-11,2348-2339;12-21,2333-2324	1-1,2349-2349[UP5];x-x,2338-2334[BULt]	((((((((((.....((((((((((.&.))))))))))-----))))))))))	AAGCGGCGGCGCUAGGAUUGAUUGCC&AGUAAUUAAUC-----GUUGUUGUUU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN48703_c0_g1_2340_TPlot.pdf
TRINITY_DN48706_c0_g1:177	si_s554	TRINITY_DN48706_c0_g1	164	186	177	-25.90	-17.10	0.66023166023166	6.5	3-19,184-168;20-21,165-164	1-2,186-185[UP5];x-x,167-166[BULt]	((..(((((((((((((((((..&..)))))))))))))))))--))	CCAACGAAAGUAUUAAUUUUAAA&AAUAGAAUUAAUAUUUUCG--GG	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN48706_c0_g1_177_TPlot.pdf
TRINITY_DN4870_c0_g1:2277	si_a68	TRINITY_DN4870_c0_g1	2266	2288	2277	-25.40	-16.60	0.653543307086614	11	1-5,2288-2284;8-9,2281-2280;10-21,2277-2266	6-7,2283-2282[SIL];x-x,2279-2278[BULt]	((((((((((((..((..(((((&)))))..))--))))))))))))	UGAAGGACAAUUAAUGUCGGAGG&CUUCUUUCA--AAUUGUUUUUCA	2	0.999999998794228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN4870_c0_g1_2277_TPlot.pdf
TRINITY_DN4870_c0_g1:2376	si_a350	TRINITY_DN4870_c0_g1	2365	2385	2376	-20.30	-14.70	0.724137931034483	13.5	7-20,2379-2366	1-6,2385-2380[UP5];21-21,2365-2365[UP3]	.((((((((((((((......&......)))))))))))))).	CCAAGAUAGAAUUGAAAGCAU&AAAAUAUUAAUUCUAUUUUGA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN4870_c0_g1_2376_TPlot.pdf
TRINITY_DN4870_c0_g1:2576	si_s611	TRINITY_DN4870_c0_g1	2565	2586	2576	-28.20	-19.20	0.680851063829787	11	3-9,2584-2578;11-19,2575-2567	1-2,2586-2585[UP5];10-10,2577-2576[AILt];20-21,2566-2565[UP3]	..(((((((((..(((((((..&..)))))))-.)))))))))..	AAGCUUGGAUUAGAGAGAAGGA&AUCUUUUUU-AAAUCCAAGCGA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN4870_c0_g1_2576_TPlot.pdf
TRINITY_DN4870_c0_g1:2579	si_s609	TRINITY_DN4870_c0_g1	2567	2588	2579	-27.70	-18.80	0.67870036101083	13	5-11,2584-2578;13-21,2575-2567	1-4,2588-2585[UP5];12-12,2577-2576[AILt]	(((((((((..(((((((....&....)))))))-.)))))))))	GCUUGGAUUAGAGAGAAGGAAC&GAAUCUUUUUU-AAAUCCAAGC	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN4870_c0_g1_2579_TPlot.pdf
TRINITY_DN4870_c0_g1:2727	si_a79	TRINITY_DN4870_c0_g1	2716	2736	2727	-22.20	-15.10	0.68018018018018	10.5	1-15,2736-2722	16-21,2721-2716[UP3]	......(((((((((((((((&)))))))))))))))......	UAAACAGAUGAUGGAAGACGA&UUGUUUUUCAUUAUUAAGAAA	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN4870_c0_g1_2727_TPlot.pdf
TRINITY_DN4870_c0_g1:2730	si_a76	TRINITY_DN4870_c0_g1	2719	2739	2730	-21.20	-15.10	0.712264150943396	12	4-18,2736-2722	1-3,2739-2737[UP5];19-21,2721-2719[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACAGAUGAUGGAAGACGAACA&AAAUUGUUUUUCAUUAUUAAG	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN4870_c0_g1_2730_TPlot.pdf
TRINITY_DN4870_c0_g1:2731	si_a75	TRINITY_DN4870_c0_g1	2720	2740	2731	-21.30	-15.10	0.708920187793427	13	5-19,2736-2722	1-4,2740-2737[UP5];20-21,2721-2720[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAGAUGAUGGAAGACGAACAC&CAAAUUGUUUUUCAUUAUUAA	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN4870_c0_g1_2731_TPlot.pdf
TRINITY_DN4870_c0_g1:2732	si_a74	TRINITY_DN4870_c0_g1	2721	2741	2732	-22.20	-15.10	0.68018018018018	13.5	6-20,2736-2722	1-5,2741-2737[UP5];21-21,2721-2721[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAUGAUGGAAGACGAACACU&UCAAAUUGUUUUUCAUUAUUA	3	0.999999796088195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN4870_c0_g1_2732_TPlot.pdf
TRINITY_DN4870_c0_g1:2733	si_a73	TRINITY_DN4870_c0_g1	2722	2742	2733	-21.90	-14.60	0.666666666666667	14.5	7-21,2736-2722	1-6,2742-2737[UP5]	(((((((((((((((......&......)))))))))))))))	GAUGAUGGAAGACGAACACUU&UUCAAAUUGUUUUUCAUUAUU	3	0.999999999981206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN4870_c0_g1_2733_TPlot.pdf
TRINITY_DN4870_c0_g1:3032	si_a114	TRINITY_DN4870_c0_g1	3021	3041	3032	-27.90	-20.30	0.727598566308244	11	4-17,3038-3025	1-3,3041-3039[UP5];18-21,3024-3021[UP3]	....((((((((((((((...&...))))))))))))))....	UGAAAGAGCAGGCUCGUAAUU&AAAUACGAGCUUGUUUUAUAG	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN4870_c0_g1_3032_TPlot.pdf
TRINITY_DN4870_c0_g1:3036	si_a110	TRINITY_DN4870_c0_g1	3025	3045	3036	-27.80	-20.00	0.719424460431655	14.5	8-21,3038-3025	1-7,3045-3039[UP5]	((((((((((((((.......&.......))))))))))))))	AGAGCAGGCUCGUAAUUGCAG&GAUAAAAUACGAGCUUGUUUU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN4870_c0_g1_3036_TPlot.pdf
TRINITY_DN4870_c0_g1:3241	si_a637	TRINITY_DN4870_c0_g1	3229	3250	3241	-25.80	-17.60	0.682170542635659	6.5	1-14,3250-3237;15-17,3235-3233	x-x,3236-3236[BULt];18-21,3232-3229[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	GGCGUACGUUAAAAAAGUCGAC&GUCGAUUUUUUUGA-GUAAUAU	4	0.999999214893531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN4870_c0_g1_3241_TPlot.pdf
TRINITY_DN4870_c0_g1:3242	si_a636	TRINITY_DN4870_c0_g1	3230	3251	3242	-26.30	-17.70	0.673003802281369	6.5	2-15,3250-3237;16-18,3235-3233	1-1,3251-3251[UP5];x-x,3236-3236[BULt];19-21,3232-3230[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	GCGUACGUUAAAAAAGUCGACG&UGUCGAUUUUUUUGA-GUAAUA	4	0.999999931281327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN4870_c0_g1_3242_TPlot.pdf
TRINITY_DN4870_c0_g1:5058	si_s36	TRINITY_DN4870_c0_g1	5047	5067	5058	-25.00	-16.60	0.664	4	2-15,5066-5053;17-19,5051-5049;21-21,5047-5047	1-1,5067-5067[UP5];16-16,5052-5052[SIL];20-20,5048-5048[SIL]	(.(((.((((((((((((((.&.)))))))))))))).))).)	UGCAGCUGUUAAAGAUUUAGA&ACUAAAUCUUUAAUAAUUGGA	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN4870_c0_g1_5058_TPlot.pdf
TRINITY_DN4870_c0_g1:5059	si_s35	TRINITY_DN4870_c0_g1	5048	5068	5059	-24.00	-16.40	0.683333333333333	6	3-16,5066-5053;18-20,5051-5049	1-2,5068-5067[UP5];17-17,5052-5052[SIL];21-21,5048-5048[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	GCAGCUGUUAAAGAUUUAGAC&AACUAAAUCUUUAAUAAUUGG	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN4870_c0_g1_5059_TPlot.pdf
TRINITY_DN4870_c0_g1:5060	si_s34	TRINITY_DN4870_c0_g1	5049	5069	5060	-23.30	-16.10	0.690987124463519	7	4-17,5066-5053;19-21,5051-5049	1-3,5069-5067[UP5];18-18,5052-5052[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	CAGCUGUUAAAGAUUUAGACU&CAACUAAAUCUUUAAUAAUUG	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN4870_c0_g1_5060_TPlot.pdf
TRINITY_DN4870_c0_g1:5644	si_s312	TRINITY_DN4870_c0_g1	5634	5653	5644	-29.00	-19.30	0.66551724137931	10.5	5-13,5649-5641;15-19,5640-5636	1-4,5653-5650[UP5];14-14,x-x[BULq];20-21,5635-5634[UP3]	..(((((-(((((((((....&....))))))))).)))))..	CUACGAG-AGGACAGAAAUUA&AAAAUUCUGUCCUUCUUGUUA	4	0.999999999973609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4870_c0_g1_5644_TPlot.pdf
TRINITY_DN4870_c0_g1:5700	si_s87	TRINITY_DN4870_c0_g1	5688	5712	5700	-32.90	-23.20	0.70516717325228	10	2-4,5711-5709;5-18,5705-5692;19-21,5690-5688	1-1,5712-5712[UP5];x-x,5708-5706[BULt];x-x,5691-5691[BULt]	(((.((((((((((((((...(((.&.)))---))))))))))))))-)))	AAGUCGAAGAAGAGGAAGCUUGGAU&UUCC---UUUCUUCUUCUUCG-CUU	2	0.999997609468391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4870_c0_g1_5700_TPlot.pdf
TRINITY_DN4870_c0_g1:5701	si_s895	TRINITY_DN4870_c0_g1	5690	5710	5701	-31.10	-20.30	0.652733118971061	10	2-15,5709-5696	1-1,5710-5710[UP5];16-21,5695-5690[UP3]	......((((((((((((((.&.))))))))))))))......	GUCGAAGAAGAGGAAGCUUGG&AUAGGCUUUCUCUUCAAUUUC	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4870_c0_g1_5701_TPlot.pdf
TRINITY_DN4870_c0_g1:5702	si_s601	TRINITY_DN4870_c0_g1	5691	5712	5702	-28.30	-19.32	0.682685512367491	11	1-8,5712-5705;12-19,5700-5693	9-11,5704-5701[AILt];20-21,5692-5691[UP3]	..((((((((....((((((((&))))))))-...))))))))..	UCGAAGAAGAGGAAGCUUGGAU&AUCCAAGC-GAAUCUUUUUUAA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN4870_c0_g1_5702_TPlot.pdf
TRINITY_DN4870_c0_g1:5703	si_s600	TRINITY_DN4870_c0_g1	5692	5713	5703	-28.20	-19.52	0.692198581560284	11	2-9,5712-5705;13-20,5700-5693	1-1,5713-5713[UP5];10-12,5704-5701[AILt];21-21,5692-5692[UP3]	.((((((((....((((((((.&.))))))))-...)))))))).	CGAAGAAGAGGAAGCUUGGAUA&AAUCCAAGC-GAAUCUUUUUUA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN4870_c0_g1_5703_TPlot.pdf
TRINITY_DN4870_c0_g1:5704	si_s892	TRINITY_DN4870_c0_g1	5693	5713	5704	-29.50	-20.30	0.688135593220339	13	5-18,5709-5696	1-4,5713-5710[UP5];19-21,5695-5693[UP3]	...((((((((((((((....&....))))))))))))))...	GAAGAAGAGGAAGCUUGGAUA&UAAAUAGGCUUUCUCUUCAAU	2	0.99258153146589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4870_c0_g1_5704_TPlot.pdf
TRINITY_DN4870_c0_g1:5706	si_s890	TRINITY_DN4870_c0_g1	5695	5715	5706	-29.50	-20.30	0.688135593220339	14.5	7-20,5709-5696	1-6,5715-5710[UP5];21-21,5695-5695[UP3]	.((((((((((((((......&......)))))))))))))).	AGAAGAGGAAGCUUGGAUAAG&AAUAAAUAGGCUUUCUCUUCA	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4870_c0_g1_5706_TPlot.pdf
TRINITY_DN4870_c0_g1:5707	si_s618	TRINITY_DN4870_c0_g1	5696	5716	5707	-30.30	-19.80	0.653465346534653	10	5-12,5712-5705;15-21,5702-5696	1-4,5716-5713[UP5];13-14,5704-5703[SIL]	(((((((..((((((((....&....))))))))..)))))))	GAAGAGGAAGCUUGGAUAAGC&UUAAAUCCAAGCGAUCUUUUC	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN4870_c0_g1_5707_TPlot.pdf
TRINITY_DN4870_c0_g1:7367	si_s803	TRINITY_DN4870_c0_g1	7356	7376	7367	-26.00	-18.10	0.696153846153846	10	2-16,7375-7361	1-1,7376-7376[UP5];17-21,7360-7356[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUUGCGUGGCGAGGAUGAAGC&AUUUUAUCUUCGUUACCUUUU	3	0.999999559920985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN4870_c0_g1_7367_TPlot.pdf
TRINITY_DN4870_c0_g1:7369	si_s801	TRINITY_DN4870_c0_g1	7358	7381	7369	-28.20	-18.70	0.663120567375887	13	1-3,7381-7379;4-18,7375-7361	x-x,7378-7376[BULt];19-21,7360-7358[UP3]	...(((((((((((((((...(((&)))---)))))))))))))))...	UGCGUGGCGAGGAUGAAGCCUUAC&GUA---UUUUAUCUUCGUUACCUU	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN4870_c0_g1_7369_TPlot.pdf
TRINITY_DN4870_c0_g1:7370	si_s800	TRINITY_DN4870_c0_g1	7359	7382	7370	-29.70	-20.40	0.686868686868687	12	1-4,7382-7379;5-19,7375-7361	x-x,7378-7376[BULt];20-21,7360-7359[UP3]	..(((((((((((((((...((((&))))---)))))))))))))))..	GCGUGGCGAGGAUGAAGCCUUACG&CGUA---UUUUAUCUUCGUUACCU	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN4870_c0_g1_7370_TPlot.pdf
TRINITY_DN48710_c0_g1:37	si_a405	TRINITY_DN48710_c0_g1	26	46	37	-19.80	-13.70	0.691919191919192	4.5	1-10,46-37;12-21,35-26	11-11,36-36[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	UUGAAUAUAAUUAAAAUAAUU&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN48710_c0_g1_37_TPlot.pdf
TRINITY_DN48717_c0_g1:404	si_s896	TRINITY_DN48717_c0_g1	393	413	404	-31.60	-21.00	0.664556962025316	11	3-14,411-400	1-2,413-412[UP5];15-21,399-393[UP3]	.......((((((((((((..&..)))))))))))).......	CAACAGCGAGGAGAAAGCCCU&UAGGCUUUCUCUUCAAUUUCA	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN48717_c0_g1_404_TPlot.pdf
TRINITY_DN48717_c0_g1:406	si_s894	TRINITY_DN48717_c0_g1	395	415	406	-29.10	-21.00	0.721649484536082	12.5	5-16,411-400	1-4,415-412[UP5];17-21,399-395[UP3]	.....((((((((((((....&....)))))))))))).....	ACAGCGAGGAGAAAGCCCUGG&AAUAGGCUUUCUCUUCAAUUU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN48717_c0_g1_406_TPlot.pdf
TRINITY_DN48717_c0_g1:408	si_s892	TRINITY_DN48717_c0_g1	397	417	408	-29.50	-21.00	0.711864406779661	14.5	7-18,411-400	1-6,417-412[UP5];19-21,399-397[UP3]	...((((((((((((......&......))))))))))))...	AGCGAGGAGAAAGCCCUGGCU&UAAAUAGGCUUUCUCUUCAAU	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN48717_c0_g1_408_TPlot.pdf
TRINITY_DN4871_c0_g1:1677	si_s623	TRINITY_DN4871_c0_g1	1659	1686	1677	-36.40	-23.70	0.651098901098901	12.5	2-17,1685-1670;18-21,1662-1659	1-1,1686-1686[UP5];x-x,1669-1663[BULt]	((((.......((((((((((((((((.&.))))))))))))))))-------))))	CCUGUACUCACUGGAAGGGUUGCUUGGG&UCCAAGCGAUCUUUUCG-------UAGG	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN4871_c0_g1_1677_TPlot.pdf
TRINITY_DN4871_c0_g1:1680	si_s620	TRINITY_DN4871_c0_g1	1669	1689	1680	-32.10	-22.90	0.713395638629283	11	5-20,1685-1670	1-4,1689-1686[UP5];21-21,1669-1669[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUGGAAGGGUUGCUUGGGACC&AAAUCCAAGCGAUCUUUUCGU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN4871_c0_g1_1680_TPlot.pdf
TRINITY_DN4871_c0_g1:1681	si_s619	TRINITY_DN4871_c0_g1	1670	1690	1681	-31.70	-22.80	0.719242902208202	12	6-21,1685-1670	1-5,1690-1686[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGGAAGGGUUGCUUGGGACCA&UAAAUCCAAGCGAUCUUUUCG	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN4871_c0_g1_1681_TPlot.pdf
TRINITY_DN4871_c0_g1:1735	si_s249	TRINITY_DN4871_c0_g1	1724	1744	1735	-33.30	-24.00	0.720720720720721	9	2-14,1743-1731	1-1,1744-1744[UP5];15-21,1730-1724[UP3]	.......(((((((((((((.&.))))))))))))).......	GCAACUGAUCGGGGAAUGCCG&AGGCAUUUCCCGAUAUAUUAC	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN4871_c0_g1_1735_TPlot.pdf
TRINITY_DN4871_c0_g1:1737	si_s247	TRINITY_DN4871_c0_g1	1726	1746	1737	-31.70	-24.00	0.757097791798107	11	4-16,1743-1731	1-3,1746-1744[UP5];17-21,1730-1726[UP3]	.....(((((((((((((...&...))))))))))))).....	AACUGAUCGGGGAAUGCCGUC&AUAGGCAUUUCCCGAUAUAUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN4871_c0_g1_1737_TPlot.pdf
TRINITY_DN4871_c0_g1:1739	si_s245	TRINITY_DN4871_c0_g1	1728	1748	1739	-33.20	-24.00	0.72289156626506	13	6-18,1743-1731	1-5,1748-1744[UP5];19-21,1730-1728[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUGAUCGGGGAAUGCCGUCGU&CAAUAGGCAUUUCCCGAUAUA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN4871_c0_g1_1739_TPlot.pdf
TRINITY_DN4871_c0_g1:3533	si_s86	TRINITY_DN4871_c0_g1	3522	3547	3533	-32.90	-23.90	0.726443768996961	16	2-5,3546-3543;6-20,3537-3523	1-1,3547-3547[UP5];x-x,3542-3538[BULt];21-21,3522-3522[UP3]	.(((((((((((((((.....((((.&.))))-----))))))))))))))).	CGCGAAGAAGGAGGGGCCGGCGGAAG&UUUCC-----UUUCUUCUUCUUCGCU	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4871_c0_g1_3533_TPlot.pdf
TRINITY_DN4871_c0_g1:3572	si_s316	TRINITY_DN4871_c0_g1	3563	3581	3572	-31.50	-21.30	0.676190476190476	8.5	2-11,3580-3571;14-19,3570-3565	1-1,3581-3581[UP5];12-13,x-x[BULq];20-21,3564-3563[UP3]	..((((((--((((((((((.&.))))))))))..))))))..	CGUGUGAC--GGAGGGCAGAU&UUCUGUCCUUCUUGUUACAAA	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN4871_c0_g1_3572_TPlot.pdf
TRINITY_DN4871_c0_g1:3573	si_s315	TRINITY_DN4871_c0_g1	3564	3582	3573	-31.60	-21.30	0.674050632911392	8.5	3-12,3580-3571;15-20,3570-3565	1-2,3582-3581[UP5];13-14,x-x[BULq];21-21,3564-3564[UP3]	.((((((--((((((((((..&..))))))))))..)))))).	GUGUGAC--GGAGGGCAGAUC&AUUCUGUCCUUCUUGUUACAA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN4871_c0_g1_3573_TPlot.pdf
TRINITY_DN4871_c0_g1:3674	si_s305	TRINITY_DN4871_c0_g1	3664	3681	3674	-30.30	-19.92	0.657425742574257	11.5	2-8,3680-3674;14-21,3671-3664	1-1,3681-3681[UP5];9-13,3673-3672[AILq]	((((((((..---(((((((.&.))))))).....))))))))	GGGGGCAGUG---UCGCAAUG&AAUUGCGAAAAUUCUGUCCUU	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN4871_c0_g1_3674_TPlot.pdf
TRINITY_DN48722_c0_g1:225	si_a569	TRINITY_DN48722_c0_g1	212	234	225	-34.20	-22.40	0.654970760233918	6.5	1-6,234-229;8-12,227-223;14-17,221-218;18-21,215-212	7-7,228-228[SIL];13-13,222-222[SIL];x-x,217-216[BULt]	((((..((((.(((((.((((((&)))))).))))).))))--))))	UGCACCGGCAGACGAUCCACGGG&CCCGUGAAUCGUAUGUU--UGUA	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN48722_c0_g1_225_TPlot.pdf
TRINITY_DN48722_c0_g1:471	si_a510	TRINITY_DN48722_c0_g1	459	481	471	-37.00	-24.80	0.67027027027027	8.5	1-3,481-479;5-6,476-475;8-12,473-469;13-21,467-459	4-4,478-477[AILt];7-7,474-474[SIL];x-x,468-468[BULt]	(((((((((.(((((.((..(((&)))-.)).)))))-)))))))))	CGCCUUGCAGUUCCAUGGCCAGA&UCU-UCCUUGGAA-UGUAAGGCG	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN48722_c0_g1_471_TPlot.pdf
TRINITY_DN48722_c0_g1:798	si_s836	TRINITY_DN48722_c0_g1	787	807	798	-29.40	-19.60	0.666666666666667	7	4-12,804-796;14-21,794-787	1-3,807-805[UP5];13-13,795-795[SIL]	((((((((.(((((((((...&...))))))))).))))))))	UUCGCUUUCUUCAAAUUGCGU&AAACAAUUUGAAAGAAGCGAG	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s836_TRINITY_DN48722_c0_g1_798_TPlot.pdf
TRINITY_DN48722_c0_g1:799	si_s835	TRINITY_DN48722_c0_g1	788	808	799	-27.70	-19.10	0.689530685920578	8.5	5-13,804-796;15-21,794-788	1-4,808-805[UP5];14-14,795-795[SIL]	(((((((.(((((((((....&....))))))))).)))))))	UCGCUUUCUUCAAAUUGCGUC&AAAACAAUUUGAAAGAAGCGA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s835_TRINITY_DN48722_c0_g1_799_TPlot.pdf
TRINITY_DN48722_c0_g1:879	si_a285	TRINITY_DN48722_c0_g1	868	888	879	-28.30	-22.50	0.795053003533569	8.5	2-14,887-875	1-1,888-888[UP5];15-21,874-868[UP3]	.......(((((((((((((.&.))))))))))))).......	UAUAAAUGUCCAAGCGAUCUG&AAGAUCGCUUGGAUUUAAAAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN48722_c0_g1_879_TPlot.pdf
TRINITY_DN48722_c0_g1:880	si_a284	TRINITY_DN48722_c0_g1	869	889	880	-28.30	-22.50	0.795053003533569	9.5	3-15,887-875	1-2,889-888[UP5];16-21,874-869[UP3]	......(((((((((((((..&..)))))))))))))......	AUAAAUGUCCAAGCGAUCUGG&AAAGAUCGCUUGGAUUUAAAA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN48722_c0_g1_880_TPlot.pdf
TRINITY_DN48722_c0_g1:881	si_a283	TRINITY_DN48722_c0_g1	870	890	881	-28.30	-22.50	0.795053003533569	10.5	4-16,887-875	1-3,890-888[UP5];17-21,874-870[UP3]	.....(((((((((((((...&...))))))))))))).....	UAAAUGUCCAAGCGAUCUGGU&AAAAGAUCGCUUGGAUUUAAA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN48722_c0_g1_881_TPlot.pdf
TRINITY_DN48722_c0_g1:884	si_a280	TRINITY_DN48722_c0_g1	873	893	884	-32.10	-22.50	0.700934579439252	13.5	7-19,887-875	1-6,893-888[UP5];20-21,874-873[UP3]	..(((((((((((((......&......)))))))))))))..	AUGUCCAAGCGAUCUGGUGCC&ACGAAAAGAUCGCUUGGAUUU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN48722_c0_g1_884_TPlot.pdf
TRINITY_DN48722_c0_g1:885	si_a279	TRINITY_DN48722_c0_g1	874	894	885	-32.50	-22.50	0.692307692307692	14.5	8-20,887-875	1-7,894-888[UP5];21-21,874-874[UP3]	.(((((((((((((.......&.......))))))))))))).	UGUCCAAGCGAUCUGGUGCCA&UACGAAAAGAUCGCUUGGAUU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN48722_c0_g1_885_TPlot.pdf
TRINITY_DN4872_c0_g1:231	si_s92	TRINITY_DN4872_c0_g1	219	240	231	-34.90	-23.30	0.667621776504298	8.5	1-12,240-229;13-18,227-222	x-x,228-228[BULt];19-21,221-219[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AAAUGAAGCGGAAGAGGGAGGA&UUCUUCUUCUUC-GCUUCGGAU	1	0.279780531599792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4872_c0_g1_231_TPlot.pdf
TRINITY_DN4872_c0_g1:540	si_a558	TRINITY_DN4872_c0_g1	528	549	540	-35.40	-23.20	0.655367231638418	11	1-5,549-545;8-12,542-538;13-18,536-531	6-7,544-543[SIL];x-x,537-537[BULt];19-21,530-528[UP3]	...((((((.(((((..(((((&)))))..)))))-))))))...	ACGUCACGGAGGAGAGUAGGGA&UUCUUUAUCUCC-CCGUGAAUC	1	0.0457362850064658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN4872_c0_g1_540_TPlot.pdf
TRINITY_DN4872_c0_g2:603	si_s790	TRINITY_DN4872_c0_g2	593	612	603	-27.80	-18.30	0.658273381294964	9	4-12,609-601;14-21,600-593	1-3,612-610[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	GAUGGGGU-CGAGUUUGUCUG&AAAACAAGCUCGUAUUUUAUC	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN4872_c0_g2_603_TPlot.pdf
TRINITY_DN48730_c0_g1:1693	si_a412	TRINITY_DN48730_c0_g1	1682	1702	1693	-18.30	-13.00	0.710382513661202	8.5	2-16,1701-1687;18-21,1685-1682	1-1,1702-1702[UP5];17-17,1686-1686[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	UGUUAAUUUGGGUGUAAGCGC&UUGUUUAUAUUUAAAUAAAUA	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN48730_c0_g1_1693_TPlot.pdf
TRINITY_DN48746_c0_g1:1168	si_a884	TRINITY_DN48746_c0_g1	1156	1177	1168	-25.60	-16.80	0.65625	6.5	1-13,1177-1165;14-18,1163-1159	x-x,1164-1164[BULt];19-21,1158-1156[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	GCUUUGCUGAUAUUGAUUGUGA&UUGCAAUCAAUAU-AGUAAUAA	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN48746_c0_g1_1168_TPlot.pdf
TRINITY_DN48746_c0_g1:586	si_a80	TRINITY_DN48746_c0_g1	575	595	586	-22.10	-14.50	0.656108597285068	8.5	2-15,594-581	1-1,595-595[UP5];16-21,580-575[UP3]	......((((((((((((((.&.))))))))))))))......	AGAAAGUGAUGAUGAAAAACU&UGUUUUUCAUUAUUAAGAAAA	3	0.999999861197202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN48746_c0_g1_586_TPlot.pdf
TRINITY_DN48748_c0_g1:1801	si_s54	TRINITY_DN48748_c0_g1	1788	1810	1801	-32.50	-22.30	0.686153846153846	10	1-4,1810-1807;6-12,1805-1799;13-20,1796-1789	5-5,1806-1806[SIL];x-x,1798-1797[BULt];21-21,1788-1788[UP3]	.((((((((..(((((((.((((&)))).)))))))--)))))))).	CGGGUUGCUUAGGCUUGACAUCC&GGAUUUCAAGUU--AGCAACUUC	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s54_TRINITY_DN48748_c0_g1_1801_TPlot.pdf
TRINITY_DN48748_c0_g1:1802	si_s53	TRINITY_DN48748_c0_g1	1789	1811	1802	-31.20	-22.40	0.717948717948718	7.5	2-5,1810-1807;7-13,1805-1799;14-21,1796-1789	1-1,1811-1811[UP5];6-6,1806-1806[SIL];x-x,1798-1797[BULt]	((((((((..(((((((.((((.&.)))).)))))))--))))))))	GGGUUGCUUAGGCUUGACAUCCG&UGGAUUUCAAGUU--AGCAACUU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN48748_c0_g1_1802_TPlot.pdf
TRINITY_DN48748_c0_g1:1803	si_s52	TRINITY_DN48748_c0_g1	1790	1812	1803	-31.30	-22.10	0.706070287539936	7.5	2-6,1811-1807;8-14,1805-1799;15-21,1796-1790	1-1,1812-1812[UP5];7-7,1806-1806[SIL];x-x,1798-1797[BULt]	(((((((..(((((((.(((((.&.))))).)))))))--)))))))	GGUUGCUUAGGCUUGACAUCCGC&UUGGAUUUCAAGUU--AGCAACU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN48748_c0_g1_1803_TPlot.pdf
TRINITY_DN48748_c0_g1:2015	si_a633	TRINITY_DN48748_c0_g1	2004	2024	2015	-26.40	-17.18	0.650757575757576	11	2-8,2023-2017;12-20,2013-2005	1-1,2024-2024[UP5];9-11,2016-2014[SIL];21-21,2004-2004[UP3]	.(((((((((...(((((((.&.)))))))...))))))))).	CGCUCGAGGGCUGCGACAUAC&UUAUGUCGAUUUUUUUGAGUA	4	0.999999999999855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN48748_c0_g1_2015_TPlot.pdf
TRINITY_DN48748_c0_g1:2016	si_a632	TRINITY_DN48748_c0_g1	2005	2025	2016	-26.10	-16.98	0.650574712643678	11.5	3-9,2023-2017;13-21,2013-2005	1-2,2025-2024[UP5];10-12,2016-2014[SIL]	(((((((((...(((((((..&..)))))))...)))))))))	GCUCGAGGGCUGCGACAUACU&AUUAUGUCGAUUUUUUUGAGU	3	0.999999999991637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN48748_c0_g1_2016_TPlot.pdf
TRINITY_DN48748_c0_g1:2786	si_a538	TRINITY_DN48748_c0_g1	2775	2796	2786	-34.70	-22.90	0.659942363112392	7	1-5,2796-2792;6-16,2790-2780;18-21,2778-2775	x-x,2791-2791[BULt];17-17,2779-2779[SIL]	((((.(((((((((((.(((((&)))))-))))))))))).))))	AAUGAGUUGGACUGGUCCGCUC&GAGCG-AUCGGUUCAAUCUAUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a538_TRINITY_DN48748_c0_g1_2786_TPlot.pdf
TRINITY_DN48748_c0_g1:3808	si_a546	TRINITY_DN48748_c0_g1	3797	3817	3808	-28.60	-19.30	0.674825174825175	6.5	2-10,3816-3808;12-18,3806-3800;20-21,3798-3797	1-1,3817-3817[UP5];11-11,3807-3807[SIL];19-19,3799-3799[SIL]	((.(((((((.(((((((((.&.))))))))).))))))).))	GAGGAGGAGACAGAUUGAGCG&GGUUCAAUCUAUUUCUUUAUC	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN48748_c0_g1_3808_TPlot.pdf
TRINITY_DN4874_c0_g2:4097	si_s93	TRINITY_DN4874_c0_g2	4084	4106	4097	-34.80	-24.60	0.706896551724138	8	1-11,4106-4096;12-17,4093-4088;20-21,4085-4084	x-x,4095-4094[BULt];18-19,4087-4086[SIL]	((..((((((..(((((((((((&)))))))))))--))))))..))	AAGACGAAGCGCGAGGAGGAAGA&UCUUCUUCUUC--GCUUCGGAUU	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4874_c0_g2_4097_TPlot.pdf
TRINITY_DN48758_c0_g1:578	si_a347	TRINITY_DN48758_c0_g1	567	587	578	-23.50	-16.80	0.714893617021277	7	1-10,587-578;12-19,576-569	11-11,577-577[SIL];20-21,568-567[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	CUAUGGGAUUUAUGUUUUUGG&CCGAAAAUAUUAAUUCUAUUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN48758_c0_g1_578_TPlot.pdf
TRINITY_DN4875_c0_g1:2896	si_a552	TRINITY_DN4875_c0_g1	2885	2905	2896	-33.10	-22.50	0.6797583081571	15.5	7-20,2899-2886	1-6,2905-2900[UP5];21-21,2885-2885[UP3]	.((((((((((((((......&......)))))))))))))).	AGGGGAGGUGGAGGACGAAGC&AUCUAUUUCUUUAUCUCCCCG	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN4875_c0_g1_2896_TPlot.pdf
TRINITY_DN4875_c0_g1:2910	si_s90	TRINITY_DN4875_c0_g1	2899	2920	2910	-35.30	-25.70	0.728045325779037	10	2-9,2919-2912;11-20,2909-2900	1-1,2920-2920[UP5];10-10,2911-2910[AILt];21-21,2899-2899[UP3]	.((((((((((..((((((((.&.))))))))-.)))))))))).	ACGAAGCGAGGUCGGAGGAGAC&CUUUCUUCU-UCUUCGCUUCGG	4	0.999315452647563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN4875_c0_g1_2910_TPlot.pdf
TRINITY_DN48761_c0_g1:389	si_a784	TRINITY_DN48761_c0_g1	378	398	389	-24.70	-17.46	0.706882591093117	8.5	1-8,398-391;13-21,386-378	9-12,390-387[SIL]	(((((((((....((((((((&))))))))....)))))))))	GAAAUAGAACACAAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	2	0.999978893272731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN48761_c0_g1_389_TPlot.pdf
TRINITY_DN48761_c0_g1:512	si_a21	TRINITY_DN48761_c0_g1	501	523	512	-24.30	-16.66	0.68559670781893	17	1-7,523-517;11-20,511-502	8-10,516-512[AILt];21-21,501-501[UP3]	.((((((((((.....(((((((&)))))))--...)))))))))).	CUGGAACUGGGUUCUGGAGUGGG&CCUAUUU--AUUUUUAGUUCUAA	3	0.999859008526984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN48761_c0_g1_512_TPlot.pdf
TRINITY_DN48761_c0_g1:816	si_a754	TRINITY_DN48761_c0_g1	805	826	816	-34.60	-25.40	0.734104046242774	6	1-5,826-822;6-17,820-809;20-21,806-805	x-x,821-821[BULt];18-19,808-807[SIL]	((..((((((((((((.(((((&)))))-))))))))))))..))	CAUCGGCCCAAAGGAGCGUUUA&UGAAC-CUCCUUUGGGUUUUUG	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN48761_c0_g1_816_TPlot.pdf
TRINITY_DN48764_c0_g1:203	si_s77	TRINITY_DN48764_c0_g1	190	212	203	-25.50	-17.30	0.67843137254902	7.5	2-14,211-199;15-20,196-191	1-1,212-212[UP5];x-x,198-197[BULt];21-21,190-190[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	AGAGAAACCGGGAAGAAAAGGAU&UUUUUUUUCUUUCC--UUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN48764_c0_g1_203_TPlot.pdf
TRINITY_DN48766_c0_g1:156	si_s94	TRINITY_DN48766_c0_g1	144	165	156	-35.50	-24.10	0.67887323943662	9	1-10,165-156;12-17,153-148	11-11,155-154[AILt];18-21,147-144[UP3]	....((((((..((((((((((&))))))))))-.))))))....	GCUGCCGAAGAGGAAGAGGAAG&CUUCUUCUUC-GCUUCGGAUUG	2	0.998764189281505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN48766_c0_g1_156_TPlot.pdf
TRINITY_DN48766_c0_g1:160	si_s896	TRINITY_DN48766_c0_g1	149	169	160	-31.60	-20.80	0.658227848101266	8.5	3-14,167-156;17-20,153-150	1-2,169-168[UP5];15-16,155-154[SIL];21-21,149-149[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	CGAAGAGGAAGAGGAAGUCAC&UAGGCUUUCUCUUCAAUUUCA	4	0.999998973233313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN48766_c0_g1_160_TPlot.pdf
TRINITY_DN48767_c0_g1:424	si_a500	TRINITY_DN48767_c0_g1	413	433	424	-34.40	-23.30	0.677325581395349	7	1-10,433-424;12-16,422-418;18-20,416-414	11-11,423-423[SIL];17-17,417-417[SIL];21-21,413-413[UP3]	.(((.(((((.((((((((((&)))))))))).))))).))).	ACCAUGGAAGCUGAGGAACGA&UCGUUUUUCGUCUUCCUUGGA	4	0.999999435725072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN48767_c0_g1_424_TPlot.pdf
TRINITY_DN4876_c0_g1:2598	si_a176	TRINITY_DN4876_c0_g1	2587	2607	2598	-31.70	-21.40	0.675078864353312	11	2-13,2606-2595	1-1,2607-2607[UP5];14-21,2594-2587[UP3]	........((((((((((((.&.))))))))))))........	UAGUCGCAUGUCUGGACGGGG&ACCCGUCUAGAUAAUAUCUUU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN4876_c0_g1_2598_TPlot.pdf
TRINITY_DN4876_c0_g1:2623	si_s602	TRINITY_DN4876_c0_g1	2612	2632	2623	-28.10	-18.30	0.651245551601424	5	1-6,2632-2627;8-13,2625-2620;15-21,2618-2612	7-7,2626-2626[SIL];14-14,2619-2619[SIL]	(((((((.((((((.((((((&)))))).)))))).)))))))	UUUGGGGCAGAUUCUCUUGGA&UCCAAGCGAAUCUUUUUUAAA	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN4876_c0_g1_2623_TPlot.pdf
TRINITY_DN4876_c0_g1:3850	si_a302	TRINITY_DN4876_c0_g1	3839	3859	3850	-28.20	-19.50	0.691489361702128	14	6-16,3854-3844	1-5,3859-3855[UP5];17-21,3843-3839[UP3]	.....(((((((((((.....&.....))))))))))).....	CCUCACCAAGCGAAUCAUUCA&AAAAAGAUUCGCUUGGAUUUA	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN4876_c0_g1_3850_TPlot.pdf
TRINITY_DN48780_c0_g1:1000	si_a507	TRINITY_DN48780_c0_g1	989	1009	1000	-34.90	-25.00	0.716332378223496	8	1-14,1009-996	15-21,995-989[UP3]	.......((((((((((((((&)))))))))))))).......	AAAAGCCUCCAAGGAAGGCGA&UCGUCUUCCUUGGAAUGUAAG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN48780_c0_g1_1000_TPlot.pdf
TRINITY_DN48780_c0_g1:1005	si_a502	TRINITY_DN48780_c0_g1	994	1014	1005	-32.10	-29.70	0.925233644859813	3.5	1-19,1014-996	20-21,995-994[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CCUCCAAGGAAGGCGAAAAAU&GUUUUUCGUCUUCCUUGGAAU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN48780_c0_g1_1005_TPlot.pdf
TRINITY_DN48780_c0_g1:1006	si_a501	TRINITY_DN48780_c0_g1	995	1015	1006	-33.50	-29.80	0.88955223880597	4	2-20,1014-996	1-1,1015-1015[UP5];21-21,995-995[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CUCCAAGGAAGGCGAAAAAUU&CGUUUUUCGUCUUCCUUGGAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN48780_c0_g1_1006_TPlot.pdf
TRINITY_DN48780_c0_g1:1009	si_a498	TRINITY_DN48780_c0_g1	998	1018	1009	-33.50	-24.30	0.725373134328358	8.5	5-21,1014-998	1-4,1018-1015[UP5]	(((((((((((((((((....&....)))))))))))))))))	CAAGGAAGGCGAAAAAUUUUC&UGUCGUUUUUCGUCUUCCUUG	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN48780_c0_g1_1009_TPlot.pdf
TRINITY_DN48780_c0_g1:1010	si_a497	TRINITY_DN48780_c0_g1	999	1019	1010	-32.00	-21.60	0.675	10.5	6-21,1014-999	1-5,1019-1015[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAAGGCGAAAAAUUUUCC&AUGUCGUUUUUCGUCUUCCUU	2	0.999999976968622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN48780_c0_g1_1010_TPlot.pdf
TRINITY_DN48783_c0_g1:304	si_a817	TRINITY_DN48783_c0_g1	294	313	304	-30.90	-21.90	0.70873786407767	4	1-11,313-303;14-17,302-299;18-21,297-294	12-13,x-x[BULq];x-x,298-298[BULt]	((((.((((--(((((((((((&)))))))))))..))))-))))	UUCUCUUCC--UCUUCUUCUUC&GAAGAAGAAGAAAGGAA-AGAA	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN48783_c0_g1_304_TPlot.pdf
TRINITY_DN48785_c0_g1:839	si_a824	TRINITY_DN48785_c0_g1	828	848	839	-23.60	-15.40	0.652542372881356	9	2-14,847-835	1-1,848-848[UP5];15-21,834-828[UP3]	.......(((((((((((((.&.))))))))))))).......	AGGUGCAUUCUUUCCUUUUUA&AAGAAAGGAAAGAAAAAAAAU	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN48785_c0_g1_839_TPlot.pdf
TRINITY_DN48788_c0_g1:677	si_a321	TRINITY_DN48788_c0_g1	666	686	677	-26.70	-18.60	0.696629213483146	8.5	3-18,684-669	1-2,686-685[UP5];19-21,668-666[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUUGUGAAGGAAUCAUGGAAG&UAUCCAUGAUUUUUUUAUUCC	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN48788_c0_g1_677_TPlot.pdf
TRINITY_DN48788_c0_g1:680	si_a318	TRINITY_DN48788_c0_g1	669	689	680	-22.50	-18.60	0.826666666666667	11	6-21,684-669	1-5,689-685[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUGAAGGAAUCAUGGAAGAGC&AUUUAUCCAUGAUUUUUUUAU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN48788_c0_g1_680_TPlot.pdf
TRINITY_DN4878_c0_g1:1267	si_s201	TRINITY_DN4878_c0_g1	1256	1276	1267	-33.60	-22.30	0.663690476190476	8	1-4,1276-1273;6-17,1271-1260	5-5,1272-1272[SIL];18-21,1259-1256[UP3]	....((((((((((((.((((&)))).))))))))))))....	GGUGAACUGGUGCAUUGCGAA&UUUGGAAUGUACCAGUUGUGU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN4878_c0_g1_1267_TPlot.pdf
TRINITY_DN4878_c0_g1:1272	si_s196	TRINITY_DN4878_c0_g1	1261	1281	1272	-29.30	-21.30	0.726962457337884	11.5	5-9,1277-1273;11-21,1271-1261	1-4,1281-1278[UP5];10-10,1272-1272[SIL]	(((((((((((.(((((....&....))))).)))))))))))	ACUGGUGCAUUGCGAAGGUUA&AUUAUUUUGGAAUGUACCAGU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN4878_c0_g1_1272_TPlot.pdf
TRINITY_DN48793_c0_g1:2107	si_a74	TRINITY_DN48793_c0_g1	2096	2116	2107	-22.20	-17.20	0.774774774774775	7	1-11,2116-2106;14-20,2103-2097	12-13,2105-2104[SIL];21-21,2096-2096[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AAAUGGUGUUGAACAGUUUGA&UCAAAUUGUUUUUCAUUAUUA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN48793_c0_g1_2107_TPlot.pdf
TRINITY_DN48793_c0_g1:2108	si_a73	TRINITY_DN48793_c0_g1	2097	2117	2108	-21.90	-17.00	0.776255707762557	6	2-12,2116-2106;15-21,2103-2097	1-1,2117-2117[UP5];13-14,2105-2104[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AAUGGUGUUGAACAGUUUGAC&UUCAAAUUGUUUUUCAUUAUU	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN48793_c0_g1_2108_TPlot.pdf
TRINITY_DN48793_c0_g1:2109	si_a72	TRINITY_DN48793_c0_g1	2098	2118	2109	-21.90	-16.10	0.735159817351598	7.5	3-13,2116-2106;16-21,2103-2098	1-2,2118-2117[UP5];14-15,2105-2104[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	AUGGUGUUGAACAGUUUGACC&UUUCAAAUUGUUUUUCAUUAU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN48793_c0_g1_2109_TPlot.pdf
TRINITY_DN48794_c0_g1:111	si_a295	TRINITY_DN48794_c0_g1	100	121	111	-27.50	-18.54	0.674181818181818	18	1-4,121-118;12-21,109-100	5-11,117-110[AILt]	((((((((((........((((&))))-.......))))))))))	GAGCGAGUCUGAUUCGUCGUCC&GGAU-UUAAAAAAGAUUCGCUU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN48794_c0_g1_111_TPlot.pdf
TRINITY_DN48799_c0_g1:1337	si_a757	TRINITY_DN48799_c0_g1	1325	1346	1337	-33.10	-22.80	0.688821752265861	9.5	1-11,1346-1336;12-18,1334-1328	x-x,1335-1335[BULt];19-21,1327-1325[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	CAACGGAGACUCUGGAGGAGGU&ACCUCCUUUGG-GUUUUUGAUU	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN48799_c0_g1_1337_TPlot.pdf
TRINITY_DN48799_c0_g1:1338	si_a756	TRINITY_DN48799_c0_g1	1326	1347	1338	-33.10	-23.00	0.694864048338369	9.5	2-12,1346-1336;13-19,1334-1328	1-1,1347-1347[UP5];x-x,1335-1335[BULt];20-21,1327-1326[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	AACGGAGACUCUGGAGGAGGUC&AACCUCCUUUGG-GUUUUUGAU	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN48799_c0_g1_1338_TPlot.pdf
TRINITY_DN48799_c0_g1:1340	si_a754	TRINITY_DN48799_c0_g1	1328	1349	1340	-34.60	-23.00	0.664739884393064	10	4-14,1346-1336;15-21,1334-1328	1-3,1349-1347[UP5];x-x,1335-1335[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	CGGAGACUCUGGAGGAGGUCUA&UGAACCUCCUUUGG-GUUUUUG	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN48799_c0_g1_1340_TPlot.pdf
TRINITY_DN48799_c0_g1:363	si_s5	TRINITY_DN48799_c0_g1	352	372	363	-21.70	-14.80	0.682027649769585	9.5	1-16,372-357	17-21,356-352[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAGAAGAUGAUAGGUGGUAUG&UAUAUUACUUAUUAUUACUAU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN48799_c0_g1_363_TPlot.pdf
TRINITY_DN48799_c0_g1:365	si_s3	TRINITY_DN48799_c0_g1	354	374	365	-21.20	-15.30	0.721698113207547	10	2-18,373-357	1-1,374-374[UP5];19-21,356-354[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAAGAUGAUAGGUGGUAUGGU&UUUAUAUUACUUAUUAUUACU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN48799_c0_g1_365_TPlot.pdf
TRINITY_DN48799_c0_g1:964	si_s634	TRINITY_DN48799_c0_g1	953	973	964	-38.30	-25.20	0.657963446475196	9	1-7,973-967;9-19,965-955	8-8,966-966[SIL];20-21,954-953[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GUGGGUAGAUGCCGAUGGAGA&UUUUCGUAGGCGUUUGCCCUC	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN48799_c0_g1_964_TPlot.pdf
TRINITY_DN48799_c0_g1:965	si_s633	TRINITY_DN48799_c0_g1	954	974	965	-37.90	-25.40	0.670184696569921	8.5	2-8,973-967;10-20,965-955	1-1,974-974[UP5];9-9,966-966[SIL];21-21,954-954[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UGGGUAGAUGCCGAUGGAGAA&CUUUUCGUAGGCGUUUGCCCU	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN48799_c0_g1_965_TPlot.pdf
TRINITY_DN48799_c0_g1:966	si_s632	TRINITY_DN48799_c0_g1	955	975	966	-38.20	-25.00	0.654450261780105	9.5	3-9,973-967;11-21,965-955	1-2,975-974[UP5];10-10,966-966[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GGGUAGAUGCCGAUGGAGAAC&UCUUUUCGUAGGCGUUUGCCC	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN48799_c0_g1_966_TPlot.pdf
TRINITY_DN487_c0_g2:687	si_s823	TRINITY_DN487_c0_g2	676	696	687	-22.20	-14.50	0.653153153153153	11	6-19,691-678	1-5,696-692[UP5];20-21,677-676[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUUUGUUUUUCAUUAUGGCCC&UCUUAAUAAUGAAAAACAAUU	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN487_c0_g2_687_TPlot.pdf
TRINITY_DN487_c0_g3:330	si_s82	TRINITY_DN487_c0_g3	315	339	330	-28.90	-23.50	0.813148788927336	11	1-12,339-328;13-21,323-315	x-x,327-324[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	AAGAAGAAGCGCAGGAGGAAGGAAA&UUUCUUUCCUUU----CUUCUUCUU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN487_c0_g3_330_TPlot.pdf
TRINITY_DN487_c0_g3:331	si_s81	TRINITY_DN487_c0_g3	313	340	331	-28.90	-23.20	0.802768166089965	16.5	1-12,340-329;13-21,321-313	x-x,328-322[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	AGAAGAAGAAGCGCAGGAGGAAGGAAAG&UUUUCUUUCCUU-------UCUUCUUCU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN487_c0_g3_331_TPlot.pdf
TRINITY_DN487_c0_g3:337	si_s79	TRINITY_DN487_c0_g3	326	346	337	-26.20	-19.10	0.729007633587786	13	7-20,340-327	1-6,346-341[UP5];21-21,326-326[UP3]	.((((((((((((((......&......)))))))))))))).	CAGGAGGAAGGAAAGUUAUGC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN487_c0_g3_337_TPlot.pdf
TRINITY_DN487_c0_g3:338	si_s78	TRINITY_DN487_c0_g3	327	347	338	-26.20	-19.10	0.729007633587786	14	8-21,340-327	1-7,347-341[UP5]	((((((((((((((.......&.......))))))))))))))	AGGAGGAAGGAAAGUUAUGCC&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN487_c0_g3_338_TPlot.pdf
TRINITY_DN487_c0_g3:339	si_s77	TRINITY_DN487_c0_g3	328	348	339	-25.50	-17.90	0.701960784313725	16	9-21,340-328	1-8,348-341[UP5]	(((((((((((((........&........)))))))))))))	GGAGGAAGGAAAGUUAUGCCA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN487_c0_g3_339_TPlot.pdf
TRINITY_DN487_c0_g3:340	si_s76	TRINITY_DN487_c0_g3	329	349	340	-23.60	-15.60	0.661016949152542	18	10-21,340-329	1-9,349-341[UP5]	((((((((((((.........&.........))))))))))))	GAGGAAGGAAAGUUAUGCCAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN487_c0_g3_340_TPlot.pdf
TRINITY_DN48811_c0_g1:1328	si_a785	TRINITY_DN48811_c0_g1	1318	1337	1328	-25.90	-18.70	0.722007722007722	6	2-15,1336-1323;17-21,1322-1318	1-1,1337-1337[UP5];16-16,x-x[BULq]	(((((-((((((((((((((.&.)))))))))))))).)))))	GAAAA-AGAGGAAUGGAGGAU&CUCUUCUAUUUUUCUAUUUUC	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN48811_c0_g1_1328_TPlot.pdf
TRINITY_DN48811_c0_g1:2110	si_a469	TRINITY_DN48811_c0_g1	2099	2119	2110	-21.10	-15.10	0.71563981042654	9.5	1-9,2119-2111;12-19,2108-2101	10-11,2110-2109[SIL];20-21,2100-2099[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AAAGCGAUGACGACAUGUUGU&AUAAUAUGUAAUUAUUGUUAU	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN48811_c0_g1_2110_TPlot.pdf
TRINITY_DN48811_c0_g1:2111	si_a468	TRINITY_DN48811_c0_g1	2100	2120	2111	-21.30	-15.10	0.708920187793427	9.5	2-10,2119-2111;13-20,2108-2101	1-1,2120-2120[UP5];11-12,2110-2109[SIL];21-21,2100-2100[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	AAGCGAUGACGACAUGUUGUC&UAUAAUAUGUAAUUAUUGUUA	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN48811_c0_g1_2111_TPlot.pdf
TRINITY_DN48811_c0_g1:2112	si_a467	TRINITY_DN48811_c0_g1	2101	2121	2112	-21.10	-14.80	0.701421800947867	9.5	3-11,2119-2111;14-21,2108-2101	1-2,2121-2120[UP5];12-13,2110-2109[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	AGCGAUGACGACAUGUUGUCC&AUAUAAUAUGUAAUUAUUGUU	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN48811_c0_g1_2112_TPlot.pdf
TRINITY_DN48811_c0_g1:2113	si_a466	TRINITY_DN48811_c0_g1	2102	2122	2113	-21.50	-14.00	0.651162790697674	10.5	4-12,2119-2111;15-21,2108-2102	1-3,2122-2120[UP5];13-14,2110-2109[SIL]	(((((((..(((((((((...&...)))))))))..)))))))	GCGAUGACGACAUGUUGUCCU&UAUAUAAUAUGUAAUUAUUGU	2	0.984730623737313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN48811_c0_g1_2113_TPlot.pdf
TRINITY_DN48811_c0_g1:779	si_s75	TRINITY_DN48811_c0_g1	768	788	779	-24.00	-19.20	0.8	10.5	5-20,784-769	1-4,788-785[UP5];21-21,768-768[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAAAGGGAGGAAAAAGCAGA&UAUUUUUUUUCUUUCCUUUCU	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN48811_c0_g1_779_TPlot.pdf
TRINITY_DN48811_c0_g1:780	si_s74	TRINITY_DN48811_c0_g1	769	789	780	-25.00	-18.90	0.756	11	6-21,784-769	1-5,789-785[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAAGGGAGGAAAAAGCAGAU&CUAUUUUUUUUCUUUCCUUUC	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN48811_c0_g1_780_TPlot.pdf
TRINITY_DN48811_c0_g1:783	si_s71	TRINITY_DN48811_c0_g1	772	793	783	-25.70	-17.00	0.66147859922179	8	1-4,793-790;6-9,789-786;10-21,783-772	5-5,x-x[BULq];x-x,785-784[BULt]	((((((((((((..((((-((((&)))).))))--))))))))))))	AGGGAGGAAAAAGCAGAU-GAAG&CUUCUAUUU--UUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN48811_c0_g1_783_TPlot.pdf
TRINITY_DN48811_c0_g1:920	si_s79	TRINITY_DN48811_c0_g1	899	929	920	-26.20	-17.20	0.656488549618321	15	1-14,929-916;15-19,905-901	x-x,915-906[BULt];20-21,900-899[UP3]	..(((((..........((((((((((((((&))))))))))))))----------)))))..	UUGAAGGCACUCAAGUUGAGGAAAGAGAAGA&UUUUUUCUUUCCUU----------UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN48811_c0_g1_920_TPlot.pdf
TRINITY_DN48811_c0_g1:925	si_s74	TRINITY_DN48811_c0_g1	914	934	925	-25.00	-16.30	0.652	13.5	6-19,929-916	1-5,934-930[UP5];20-21,915-914[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGAGGAAAGAGAAGAUAACA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN48811_c0_g1_925_TPlot.pdf
TRINITY_DN48812_c0_g1:440	si_s812	TRINITY_DN48812_c0_g1	428	449	440	-26.40	-17.90	0.678030303030303	5	1-12,449-438;13-15,436-434;18-21,431-428	x-x,437-437[BULt];16-17,433-432[SIL]	((((..(((.((((((((((((&))))))))))))-)))..))))	AUUAAAAAGAAAAAGGUGACGA&UCGUUACCUUUU-CUUAAUAAU	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN48812_c0_g1_440_TPlot.pdf
TRINITY_DN48812_c0_g1:441	si_s811	TRINITY_DN48812_c0_g1	429	450	441	-26.40	-17.90	0.678030303030303	8	2-13,449-438;14-16,436-434	1-1,450-450[UP5];x-x,437-437[BULt];17-21,433-429[UP3]	.....(((.((((((((((((.&.))))))))))))-))).....	UUAAAAAGAAAAAGGUGACGAU&UUCGUUACCUUUU-CUUAAUAA	2	0.998182325710981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN48812_c0_g1_441_TPlot.pdf
TRINITY_DN48812_c0_g1:443	si_s809	TRINITY_DN48812_c0_g1	431	453	443	-28.50	-19.50	0.684210526315789	7	1-3,453-451;4-15,449-438;16-18,436-434	x-x,450-450[BULt];x-x,437-437[BULt];19-21,433-431[UP3]	...(((.((((((((((((.(((&)))-))))))))))))-)))...	AAAAAGAAAAAGGUGACGAUAGA&UCU-UCGUUACCUUUU-CUUAAU	3	0.999997049065349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN48812_c0_g1_443_TPlot.pdf
TRINITY_DN48812_c0_g1:449	si_s803	TRINITY_DN48812_c0_g1	438	471	449	-26.00	-18.20	0.7	29.5	1-9,471-463;10-21,449-438	x-x,462-450[BULt]	((((((((((((.............(((((((((&)))))))))-------------))))))))))))	AAAAGGUGACGAUAGAAGUUUCAGUAGAUGGAGU&AUUUUAUCU-------------UCGUUACCUUUU	3	0.999999030805929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN48812_c0_g1_449_TPlot.pdf
TRINITY_DN48814_c0_g1:2054	si_s549	TRINITY_DN48814_c0_g1	2041	2063	2054	-20.50	-14.00	0.682926829268293	7.5	1-12,2063-2052;13-18,2049-2044	x-x,2051-2050[BULt];19-21,2043-2041[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	UAUUGUUAAAUUUCUAUUUUGAU&AUCAAAAUAGAA--UUAAUAUUU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN48814_c0_g1_2054_TPlot.pdf
TRINITY_DN48814_c0_g1:2057	si_s546	TRINITY_DN48814_c0_g1	2044	2066	2057	-26.20	-17.60	0.67175572519084	4.5	2-15,2065-2052;16-21,2049-2044	1-1,2066-2066[UP5];x-x,2051-2050[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	UGUUAAAUUUCUAUUUUGAUUGU&CCGAUCAAAAUAGAA--UUAAUA	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s546_TRINITY_DN48814_c0_g1_2057_TPlot.pdf
TRINITY_DN48816_c0_g1:1287	si_s68	TRINITY_DN48816_c0_g1	1276	1296	1287	-23.10	-15.70	0.67965367965368	11.5	6-21,1291-1276	1-5,1296-1292[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAGGAGAAAGAUAGAUAACA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN48816_c0_g1_1287_TPlot.pdf
TRINITY_DN48817_c0_g1:1135	si_s312	TRINITY_DN48817_c0_g1	1124	1144	1135	-29.00	-20.40	0.703448275862069	11.5	5-8,1140-1137;10-19,1135-1126	1-4,1144-1141[UP5];9-9,1136-1136[SIL];20-21,1125-1124[UP3]	..((((((((((.((((....&....)))).))))))))))..	CUACGAGAAGGAGAGAAGUCG&AAAAUUCUGUCCUUCUUGUUA	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN48817_c0_g1_1135_TPlot.pdf
TRINITY_DN48817_c0_g1:1147	si_a627	TRINITY_DN48817_c0_g1	1136	1162	1147	-29.50	-19.40	0.657627118644068	19.5	1-3,1162-1160;4-6,1153-1151;9-21,1148-1136	x-x,1159-1154[BULt];7-8,1150-1149[SIL]	(((((((((((((..(((......(((&)))------)))..)))))))))))))	GAGAAGUCGGCAUCUUGCCUCGAGGCC&GGC------GUAUUAUGUCGAUUUUUU	2	0.999815947376409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN48817_c0_g1_1147_TPlot.pdf
TRINITY_DN48817_c0_g1:1668	si_a143	TRINITY_DN48817_c0_g1	1657	1677	1668	-25.10	-16.50	0.657370517928287	14	6-18,1672-1660	1-5,1677-1673[UP5];19-21,1659-1657[UP3]	...(((((((((((((.....&.....)))))))))))))...	GCGGAAACGGCAACGAGCUGA&AUUAAUCGUUGUUGUUUUAAG	3	0.999999956221005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN48817_c0_g1_1668_TPlot.pdf
TRINITY_DN48817_c0_g1:815	si_a142	TRINITY_DN48817_c0_g1	804	823	815	-23.50	-16.30	0.693617021276596	10.5	3-6,821-818;8-19,817-806	1-2,823-822[UP5];7-7,x-x[BULq];20-21,805-804[UP3]	..((((((((((((-((((..&..)))).))))))))))))..	CGGAAGCAGCAGCG-UUGACU&AAUUAAUCGUUGUUGUUUUAA	4	0.999999915525935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN48817_c0_g1_815_TPlot.pdf
TRINITY_DN48817_c0_g1:818	si_a139	TRINITY_DN48817_c0_g1	807	826	818	-25.90	-17.50	0.675675675675676	8.5	2-4,825-823;6-9,821-818;11-21,817-807	1-1,826-826[UP5];5-5,822-822[SIL];10-10,x-x[BULq]	(((((((((((-((((.(((.&.))).)))).)))))))))))	AAGCAGCAGCG-UUGACUGCG&AGUAAUUAAUCGUUGUUGUUU	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN48817_c0_g1_818_TPlot.pdf
TRINITY_DN48823_c0_g1:590	si_a732	TRINITY_DN48823_c0_g1	577	599	590	-45.40	-30.10	0.662995594713656	5.5	1-14,599-586;16-18,583-581;19-21,579-577	15-15,585-584[AILt];x-x,580-580[BULt]	(((.(((..((((((((((((((&))))))))))))))-.)))-)))	GGCGUAGAUGGUGAAGAUGCCUG&CGGGCAUCUUUACC-CCUG-GCC	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a732_TRINITY_DN48823_c0_g1_590_TPlot.pdf
TRINITY_DN48823_c0_g1:594	si_a728	TRINITY_DN48823_c0_g1	583	604	594	-40.30	-27.80	0.689826302729529	6.5	1-4,604-601;5-18,599-586	x-x,600-600[BULt];19-21,585-583[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	GAUGGUGAAGAUGCCUGUAGUA&UACU-CGGGCAUCUUUACCCCU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN48823_c0_g1_594_TPlot.pdf
TRINITY_DN48823_c0_g1:595	si_a727	TRINITY_DN48823_c0_g1	584	605	595	-39.70	-28.50	0.717884130982368	5.5	1-5,605-601;6-19,599-586	x-x,600-600[BULt];20-21,585-584[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	AUGGUGAAGAUGCCUGUAGUAA&UUACU-CGGGCAUCUUUACCCC	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN48823_c0_g1_595_TPlot.pdf
TRINITY_DN48823_c0_g1:596	si_a726	TRINITY_DN48823_c0_g1	585	606	596	-39.00	-30.10	0.771794871794872	5	1-6,606-601;7-20,599-586	x-x,600-600[BULt];21-21,585-585[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	UGGUGAAGAUGCCUGUAGUAAU&GUUACU-CGGGCAUCUUUACCC	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a726_TRINITY_DN48823_c0_g1_596_TPlot.pdf
TRINITY_DN48823_c0_g1:601	si_a722	TRINITY_DN48823_c0_g1	589	610	601	-34.70	-22.80	0.657060518731988	11.5	5-10,606-601;11-21,599-589	1-4,610-607[UP5];x-x,600-600[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GAAGAUGCCUGUAGUAAUAUCU&AAUCGUUACU-CGGGCAUCUUU	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN48823_c0_g1_601_TPlot.pdf
TRINITY_DN48827_c0_g1:291	si_a636	TRINITY_DN48827_c0_g1	280	301	291	-26.30	-17.20	0.653992395437262	7.5	2-9,300-293;10-18,291-283	1-1,301-301[UP5];x-x,292-292[BULt];19-21,282-280[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	UUCUAUUCAAAACAAAUCGGCG&UGUCGAUUU-UUUUGAGUAAUA	2	0.999999685636867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN48827_c0_g1_291_TPlot.pdf
TRINITY_DN48827_c0_g1:295	si_a633	TRINITY_DN48827_c0_g1	283	304	295	-26.40	-18.20	0.689393939393939	7.5	3-12,302-293;13-21,291-283	1-2,304-303[UP5];x-x,292-292[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	UAUUCAAAACAAAUCGGCGUUA&UUAUGUCGAUUU-UUUUGAGUA	4	0.999989198946718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN48827_c0_g1_295_TPlot.pdf
TRINITY_DN48829_c0_g1:1161	si_a359	TRINITY_DN48829_c0_g1	1150	1170	1161	-29.20	-19.20	0.657534246575342	8	2-8,1169-1163;10-20,1161-1151	1-1,1170-1170[UP5];9-9,1162-1162[SIL];21-21,1150-1150[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	AUGGUUCGAUUAUAGUAGAGG&AUUCUAUUUUGAUCGGAUCAA	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN48829_c0_g1_1161_TPlot.pdf
TRINITY_DN48829_c0_g1:1162	si_a358	TRINITY_DN48829_c0_g1	1151	1171	1162	-29.10	-19.00	0.652920962199313	9	3-9,1169-1163;11-21,1161-1151	1-2,1171-1170[UP5];10-10,1162-1162[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	UGGUUCGAUUAUAGUAGAGGG&AAUUCUAUUUUGAUCGGAUCA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN48829_c0_g1_1162_TPlot.pdf
TRINITY_DN48829_c0_g1:1225	si_s27	TRINITY_DN48829_c0_g1	1215	1234	1225	-27.00	-17.90	0.662962962962963	4.5	1-9,1234-1226;11-15,1224-1220;17-20,1219-1216	10-10,1225-1225[SIL];16-16,x-x[BULq];21-21,1215-1215[UP3]	.((((-(((((.(((((((((&))))))))).))))).)))).	AAGAG-UUUAGCUGCAAUCAA&UUGAUUGCAACUAAAUCUUUA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN48829_c0_g1_1225_TPlot.pdf
TRINITY_DN48829_c0_g1:1226	si_s26	TRINITY_DN48829_c0_g1	1214	1235	1226	-26.70	-18.70	0.700374531835206	4	1-10,1235-1226;12-16,1224-1220;17-20,1218-1215	11-11,1225-1225[SIL];x-x,1219-1219[BULt];21-21,1214-1214[UP3]	.((((.(((((.((((((((((&)))))))))).)))))-)))).	UAAGAGUUUAGCUGCAAUCAAU&AUUGAUUGCAACUAAA-UCUUU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN48829_c0_g1_1226_TPlot.pdf
TRINITY_DN48829_c0_g1:1227	si_s25	TRINITY_DN48829_c0_g1	1215	1236	1227	-27.10	-18.70	0.690036900369004	4	2-11,1235-1226;13-17,1224-1220;18-21,1218-1215	1-1,1236-1236[UP5];12-12,1225-1225[SIL];x-x,1219-1219[BULt]	((((.(((((.((((((((((.&.)))))))))).)))))-))))	AAGAGUUUAGCUGCAAUCAAUU&UAUUGAUUGCAACUAAA-UCUU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN48829_c0_g1_1227_TPlot.pdf
TRINITY_DN48829_c0_g1:1229	si_s23	TRINITY_DN48829_c0_g1	1218	1238	1229	-27.00	-17.60	0.651851851851852	7.5	4-13,1235-1226;15-20,1224-1219	1-3,1238-1236[UP5];14-14,1225-1225[SIL];21-21,1218-1218[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AGUUUAGCUGCAAUCAAUUUU&UAUAUUGAUUGCAACUAAAUC	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN48829_c0_g1_1229_TPlot.pdf
TRINITY_DN48829_c0_g1:1230	si_s22	TRINITY_DN48829_c0_g1	1219	1239	1230	-26.70	-17.40	0.651685393258427	8.5	5-14,1235-1226;16-21,1224-1219	1-4,1239-1236[UP5];15-15,1225-1225[SIL]	((((((.((((((((((....&....)))))))))).))))))	GUUUAGCUGCAAUCAAUUUUA&CUAUAUUGAUUGCAACUAAAU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN48829_c0_g1_1230_TPlot.pdf
TRINITY_DN48829_c0_g1:1237	si_s15	TRINITY_DN48829_c0_g1	1226	1250	1237	-25.60	-17.56	0.6859375	16	1-9,1250-1242;12-21,1235-1226	10-11,1241-1236[AILt]	((((((((((......(((((((((&)))))))))----..))))))))))	UGCAAUCAAUUUUACCGGUGAUGGU&AUUAUUACU----AUAUUGAUUGCA	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN48829_c0_g1_1237_TPlot.pdf
TRINITY_DN48829_c0_g1:1368	si_a475	TRINITY_DN48829_c0_g1	1357	1377	1368	-23.50	-16.20	0.68936170212766	6.5	1-13,1377-1365;16-19,1362-1359	14-15,1364-1363[SIL];20-21,1358-1357[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	UACUAUUAGACGGUAAUUACA&UGUAAUUAUUGUUAUAUAGAA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN48829_c0_g1_1368_TPlot.pdf
TRINITY_DN48829_c0_g1:1410	si_a872	TRINITY_DN48829_c0_g1	1399	1419	1410	-27.00	-18.60	0.688888888888889	7.5	1-6,1419-1414;9-17,1411-1403;19-20,1401-1400	7-8,1413-1412[SIL];18-18,1402-1402[SIL];21-21,1399-1399[UP3]	.((.(((((((((..((((((&))))))..))))))))).)).	GGACUGCAGCUAAUCCUUUGA&UUAAAGAUUUAGUUGCAAUCA	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN48829_c0_g1_1410_TPlot.pdf
TRINITY_DN48829_c0_g1:1411	si_a871	TRINITY_DN48829_c0_g1	1400	1420	1411	-26.40	-18.20	0.689393939393939	7.5	2-7,1419-1414;10-18,1411-1403;20-21,1401-1400	1-1,1420-1420[UP5];8-9,1413-1412[SIL];19-19,1402-1402[SIL]	((.(((((((((..((((((.&.))))))..))))))))).))	GACUGCAGCUAAUCCUUUGAA&AUUAAAGAUUUAGUUGCAAUC	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN48829_c0_g1_1411_TPlot.pdf
TRINITY_DN48829_c0_g1:1413	si_a869	TRINITY_DN48829_c0_g1	1402	1422	1413	-24.80	-17.20	0.693548387096774	11.5	4-9,1419-1414;12-20,1411-1403	1-3,1422-1420[UP5];10-11,1413-1412[SIL];21-21,1402-1402[UP3]	.(((((((((..((((((...&...))))))..))))))))).	CUGCAGCUAAUCCUUUGAAGC&UUAUUAAAGAUUUAGUUGCAA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN48829_c0_g1_1413_TPlot.pdf
TRINITY_DN48829_c0_g1:1414	si_a868	TRINITY_DN48829_c0_g1	1403	1423	1414	-24.80	-16.90	0.681451612903226	12.5	5-10,1419-1414;13-21,1411-1403	1-4,1423-1420[UP5];11-12,1413-1412[SIL]	(((((((((..((((((....&....))))))..)))))))))	UGCAGCUAAUCCUUUGAAGCU&AUUAUUAAAGAUUUAGUUGCA	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN48829_c0_g1_1414_TPlot.pdf
TRINITY_DN48829_c0_g1:3906	si_a285	TRINITY_DN48829_c0_g1	3895	3917	3906	-28.30	-18.50	0.653710247349823	9	2-6,3916-3912;7-9,3910-3908;11-19,3905-3897	1-1,3917-3917[UP5];x-x,3911-3911[BULt];10-10,3907-3906[AILt];20-21,3896-3895[UP3]	..(((((((((..(((.(((((.&.)))))-)))-.)))))))))..	ACUUUAAAUCCUCAGCGGAUCUA&AAGAUC-GCU-UGGAUUUAAAAA	3	0.99999698871827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN48829_c0_g1_3906_TPlot.pdf
TRINITY_DN48829_c0_g1:3909	si_a304	TRINITY_DN48829_c0_g1	3897	3918	3909	-30.40	-20.70	0.680921052631579	10	3-11,3916-3908;13-19,3905-3899	1-2,3918-3917[UP5];12-12,3907-3906[AILt];20-21,3898-3897[UP3]	..(((((((..(((((((((..&..)))))))))-.)))))))..	UUUAAAUCCUCAGCGGAUCUAA&AAAGAUUCGCU-UGGAUUUAUC	2	0.888141678445066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN48829_c0_g1_3909_TPlot.pdf
TRINITY_DN48829_c0_g1:3910	si_a303	TRINITY_DN48829_c0_g1	3898	3919	3910	-28.40	-20.70	0.72887323943662	10	4-12,3916-3908;14-20,3905-3899	1-3,3919-3917[UP5];13-13,3907-3906[AILt];21-21,3898-3898[UP3]	.(((((((..(((((((((...&...)))))))))-.))))))).	UUAAAUCCUCAGCGGAUCUAAC&AAAAGAUUCGCU-UGGAUUUAU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN48829_c0_g1_3910_TPlot.pdf
TRINITY_DN48829_c0_g1:3911	si_a302	TRINITY_DN48829_c0_g1	3899	3920	3911	-28.20	-20.60	0.730496453900709	10	5-13,3916-3908;15-21,3905-3899	1-4,3920-3917[UP5];14-14,3907-3906[AILt]	(((((((..(((((((((....&....)))))))))-.)))))))	UAAAUCCUCAGCGGAUCUAACU&AAAAAGAUUCGCU-UGGAUUUA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN48829_c0_g1_3911_TPlot.pdf
TRINITY_DN48829_c0_g1:3912	si_a301	TRINITY_DN48829_c0_g1	3900	3921	3912	-27.80	-19.10	0.68705035971223	12	6-14,3916-3908;16-21,3905-3900	1-5,3921-3917[UP5];15-15,3907-3906[AILt]	((((((..(((((((((.....&.....)))))))))-.))))))	AAAUCCUCAGCGGAUCUAACUC&AAAAAAGAUUCGCU-UGGAUUU	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN48829_c0_g1_3912_TPlot.pdf
TRINITY_DN48829_c0_g1:3913	si_a300	TRINITY_DN48829_c0_g1	3901	3922	3913	-28.20	-18.40	0.652482269503546	14	7-15,3916-3908;17-21,3905-3901	1-6,3922-3917[UP5];16-16,3907-3906[AILt]	(((((..(((((((((......&......)))))))))-.)))))	AAUCCUCAGCGGAUCUAACUCA&UAAAAAAGAUUCGCU-UGGAUU	2	0.997046598298336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN48829_c0_g1_3913_TPlot.pdf
TRINITY_DN48829_c0_g1:4016	si_s69	TRINITY_DN48829_c0_g1	4005	4025	4016	-23.40	-16.90	0.722222222222222	6.5	1-12,4025-4014;14-18,4012-4008	13-13,4013-4013[SIL];19-21,4007-4005[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	AUCGGAAAUAGAGUAGAAGUU&AACUUCUAUUUUUUUUCUUUC	3	0.999999999999116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN48829_c0_g1_4016_TPlot.pdf
TRINITY_DN48829_c0_g1:4017	si_s68	TRINITY_DN48829_c0_g1	4006	4026	4017	-23.10	-19.20	0.831168831168831	5.5	1-13,4026-4014;15-19,4012-4008	14-14,4013-4013[SIL];20-21,4007-4006[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UCGGAAAUAGAGUAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN48829_c0_g1_4017_TPlot.pdf
TRINITY_DN48829_c0_g1:4018	si_s67	TRINITY_DN48829_c0_g1	4007	4027	4018	-25.60	-23.10	0.90234375	4	1-14,4027-4014;16-20,4012-4008	15-15,4013-4013[SIL];21-21,4007-4007[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CGGAAAUAGAGUAGAAGUUGC&GCAACUUCUAUUUUUUUUCUU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN48829_c0_g1_4018_TPlot.pdf
TRINITY_DN48829_c0_g1:4019	si_s66	TRINITY_DN48829_c0_g1	4008	4028	4019	-26.30	-24.50	0.931558935361217	3	1-15,4028-4014;17-21,4012-4008	16-16,4013-4013[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GGAAAUAGAGUAGAAGUUGCU&AGCAACUUCUAUUUUUUUUCU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN48829_c0_g1_4019_TPlot.pdf
TRINITY_DN48829_c0_g1:4020	si_s65	TRINITY_DN48829_c0_g1	4009	4029	4020	-26.00	-24.60	0.946153846153846	2	1-16,4029-4014;18-21,4012-4009	17-17,4013-4013[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GAAAUAGAGUAGAAGUUGCUA&UAGCAACUUCUAUUUUUUUUC	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN48829_c0_g1_4020_TPlot.pdf
TRINITY_DN48829_c0_g1:4021	si_s64	TRINITY_DN48829_c0_g1	4010	4030	4021	-24.10	-21.60	0.896265560165975	3	2-17,4029-4014;19-21,4012-4010	1-1,4030-4030[UP5];18-18,4013-4013[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	AAAUAGAGUAGAAGUUGCUAG&UUAGCAACUUCUAUUUUUUUU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN48829_c0_g1_4021_TPlot.pdf
TRINITY_DN48829_c0_g1:4022	si_s63	TRINITY_DN48829_c0_g1	4011	4031	4022	-25.80	-21.50	0.833333333333333	6	2-18,4030-4014	1-1,4031-4031[UP5];19-21,4013-4011[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAUAGAGUAGAAGUUGCUAGA&GUUAGCAACUUCUAUUUUUUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN48829_c0_g1_4022_TPlot.pdf
TRINITY_DN48829_c0_g1:4023	si_s62	TRINITY_DN48829_c0_g1	4012	4032	4023	-26.50	-21.50	0.811320754716981	7	3-19,4030-4014	1-2,4032-4031[UP5];20-21,4013-4012[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUAGAGUAGAAGUUGCUAGAU&AGUUAGCAACUUCUAUUUUUU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN48829_c0_g1_4023_TPlot.pdf
TRINITY_DN48829_c0_g1:4024	si_s61	TRINITY_DN48829_c0_g1	4013	4033	4024	-26.50	-21.50	0.811320754716981	8	4-20,4030-4014	1-3,4033-4031[UP5];21-21,4013-4013[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAGAGUAGAAGUUGCUAGAUA&AAGUUAGCAACUUCUAUUUUU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN48829_c0_g1_4024_TPlot.pdf
TRINITY_DN48829_c0_g1:4025	si_s60	TRINITY_DN48829_c0_g1	4014	4034	4025	-28.20	-21.50	0.762411347517731	9	5-21,4030-4014	1-4,4034-4031[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGAGUAGAAGUUGCUAGAUAU&CAAGUUAGCAACUUCUAUUUU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN48829_c0_g1_4025_TPlot.pdf
TRINITY_DN48829_c0_g1:4026	si_s59	TRINITY_DN48829_c0_g1	4015	4035	4026	-29.20	-20.90	0.715753424657534	11	6-21,4030-4015	1-5,4035-4031[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGUAGAAGUUGCUAGAUAUG&UCAAGUUAGCAACUUCUAUUU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN48829_c0_g1_4026_TPlot.pdf
TRINITY_DN48829_c0_g1:4027	si_s58	TRINITY_DN48829_c0_g1	4016	4036	4027	-29.30	-19.80	0.675767918088737	12.5	7-21,4030-4016	1-6,4036-4031[UP5]	(((((((((((((((......&......)))))))))))))))	AGUAGAAGUUGCUAGAUAUGC&UUCAAGUUAGCAACUUCUAUU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN48829_c0_g1_4027_TPlot.pdf
TRINITY_DN48829_c0_g1:429	si_s13	TRINITY_DN48829_c0_g1	418	439	429	-22.90	-16.10	0.703056768558952	6.5	2-8,438-432;10-21,429-418	1-1,439-439[UP5];9-9,431-430[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	CAGUUAAUGUAGGCAAUAAUAC&UUAUUAUU-ACUAUAUUGAUUG	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN48829_c0_g1_429_TPlot.pdf
TRINITY_DN48829_c0_g1:538	si_s270	TRINITY_DN48829_c0_g1	526	547	538	-25.80	-17.10	0.662790697674419	8	2-6,546-542;9-15,539-533;16-21,531-526	1-1,547-547[UP5];7-8,541-540[SIL];x-x,532-532[BULt]	((((((.(((((((..(((((.&.)))))..)))))))-))))))	GUGUUGUUGUCGGUGGUUUUGC&UCAAAAAAAUCGACA-UAAUAC	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s270_TRINITY_DN48829_c0_g1_538_TPlot.pdf
TRINITY_DN48829_c0_g1:937	si_s197	TRINITY_DN48829_c0_g1	920	946	937	-29.20	-19.00	0.650684931506849	18.5	2-7,945-940;9-10,938-937;11-21,930-920	1-1,946-946[UP5];8-8,939-939[SIL];x-x,936-931[BULt]	(((((((((((......((.((((((.&.)))))).))------)))))))))))	GACUGGUACAUUAGCAUUCGAAGGUGC&UUAUUUUGGA------AUGUACCAGUU	3	0.99998247581855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN48829_c0_g1_937_TPlot.pdf
TRINITY_DN48832_c0_g1:385	si_s315	TRINITY_DN48832_c0_g1	375	394	385	-31.60	-21.30	0.674050632911392	8	3-13,392-382;15-19,381-377	1-2,394-393[UP5];14-14,x-x[BULq];20-21,376-375[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	UAGUAAC-AGAAGGAUGGACC&AUUCUGUCCUUCUUGUUACAA	4	0.99991663427952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN48832_c0_g1_385_TPlot.pdf
TRINITY_DN48841_c0_g1:1038	si_s637	TRINITY_DN48841_c0_g1	1027	1048	1038	-40.90	-27.00	0.660146699266504	9.5	2-9,1047-1040;11-20,1037-1028	1-1,1048-1048[UP5];10-10,1039-1038[AILt];21-21,1027-1027[UP3]	.((((((((((..((((((((.&.))))))))-.)))))))))).	CUCGGGGGCAAUCCGUUUAUGG&UCGUAGGCG-UUUGCCCUCGAU	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN48841_c0_g1_1038_TPlot.pdf
TRINITY_DN48841_c0_g1:410	si_s818	TRINITY_DN48841_c0_g1	399	419	410	-23.70	-18.60	0.784810126582279	5	1-13,419-407;15-18,405-402	14-14,406-406[SIL];19-21,401-399[UP3]	...((((.(((((((((((((&))))))))))))).))))...	UAAUUCAAUAUUAAGAAGAGG&CCUUUUCUUAAUAAUGAAAAA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN48841_c0_g1_410_TPlot.pdf
TRINITY_DN48841_c0_g1:882	si_a142	TRINITY_DN48841_c0_g1	871	892	882	-23.50	-15.30	0.651063829787234	9	3-9,890-884;10-19,882-873	1-2,892-891[UP5];x-x,883-883[BULt];20-21,872-871[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	CAAGAGCAACAAGUGAUUAACA&AAUUAAUCG-UUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN48841_c0_g1_882_TPlot.pdf
TRINITY_DN48854_c0_g1:866	si_a789	TRINITY_DN48854_c0_g1	855	875	866	-24.80	-16.30	0.657258064516129	11.5	4-18,872-858	1-3,875-873[UP5];19-21,857-855[UP3]	...(((((((((((((((...&...)))))))))))))))...	UACGGAAGAUGGGGAAAUUAC&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999999947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN48854_c0_g1_866_TPlot.pdf
TRINITY_DN48857_c0_g1:1371	si_s804	TRINITY_DN48857_c0_g1	1360	1380	1371	-27.90	-19.20	0.688172043010753	7	1-7,1380-1374;9-19,1372-1362	8-8,1373-1373[SIL];20-21,1361-1360[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GUAAGGGUGAUGACGAUAAGA&UUUUAUCUUCGUUACCUUUUC	3	0.999997865526154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN48857_c0_g1_1371_TPlot.pdf
TRINITY_DN48857_c0_g1:1372	si_s803	TRINITY_DN48857_c0_g1	1361	1381	1372	-26.00	-19.20	0.738461538461538	7	2-8,1380-1374;10-20,1372-1362	1-1,1381-1381[UP5];9-9,1373-1373[SIL];21-21,1361-1361[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UAAGGGUGAUGACGAUAAGAA&AUUUUAUCUUCGUUACCUUUU	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN48857_c0_g1_1372_TPlot.pdf
TRINITY_DN48857_c0_g1:1373	si_s802	TRINITY_DN48857_c0_g1	1362	1382	1373	-26.40	-19.20	0.727272727272727	7.5	3-9,1380-1374;11-21,1372-1362	1-2,1382-1381[UP5];10-10,1373-1373[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AAGGGUGAUGACGAUAAGAAC&UAUUUUAUCUUCGUUACCUUU	2	0.962588730329404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN48857_c0_g1_1373_TPlot.pdf
TRINITY_DN48857_c0_g1:1374	si_s801	TRINITY_DN48857_c0_g1	1363	1382	1374	-28.20	-18.90	0.670212765957447	6.5	1-2,1382-1381;4-10,1380-1374;12-21,1372-1363	3-3,x-x[BULq];11-11,1373-1373[SIL]	((((((((((.(((((((-((&)).))))))).))))))))))	AGGGUGAUGACGAUAAGA-AC&GUAUUUUAUCUUCGUUACCUU	4	0.999990258141989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN48857_c0_g1_1374_TPlot.pdf
TRINITY_DN48873_c0_g1:1134	si_s22	TRINITY_DN48873_c0_g1	1123	1143	1134	-26.70	-20.70	0.775280898876405	7	1-7,1143-1137;9-17,1135-1127	8-8,1136-1136[SIL];18-21,1126-1123[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AUGGAGUUGCAAUGGAUAUAG&CUAUAUUGAUUGCAACUAAAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN48873_c0_g1_1134_TPlot.pdf
TRINITY_DN48873_c0_g1:1135	si_s21	TRINITY_DN48873_c0_g1	1124	1144	1135	-27.40	-21.30	0.777372262773723	7	2-8,1143-1137;10-18,1135-1127	1-1,1144-1144[UP5];9-9,1136-1136[SIL];19-21,1126-1124[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	UGGAGUUGCAAUGGAUAUAGC&ACUAUAUUGAUUGCAACUAAA	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN48873_c0_g1_1135_TPlot.pdf
TRINITY_DN48873_c0_g1:1316	si_s87	TRINITY_DN48873_c0_g1	1305	1325	1316	-32.90	-23.20	0.70516717325228	6	1-16,1325-1310	17-21,1309-1305[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAUAAAAGAAGAAGAGAGGAA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999679218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN48873_c0_g1_1316_TPlot.pdf
TRINITY_DN48873_c0_g1:1318	si_s85	TRINITY_DN48873_c0_g1	1307	1327	1318	-33.80	-24.30	0.718934911242604	5	2-18,1326-1310	1-1,1327-1327[UP5];19-21,1309-1307[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAAAAGAAGAAGAGAGGAAAA&CUUUCCUUUCUUCUUCUUCGC	3	0.999994244422608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN48873_c0_g1_1318_TPlot.pdf
TRINITY_DN48873_c0_g1:1321	si_s82	TRINITY_DN48873_c0_g1	1310	1331	1321	-28.90	-25.70	0.889273356401384	4	2-7,1330-1325;8-21,1323-1310	1-1,1331-1331[UP5];x-x,1324-1324[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	AAGAAGAAGAGAGGAAAAGAAU&UUUCUUU-CCUUUCUUCUUCUU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN48873_c0_g1_1321_TPlot.pdf
TRINITY_DN48873_c0_g1:1326	si_s78	TRINITY_DN48873_c0_g1	1314	1335	1326	-26.20	-19.40	0.740458015267176	11.5	6-11,1330-1325;12-21,1323-1314	1-5,1335-1331[UP5];x-x,1324-1324[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	AGAAGAGAGGAAAAGAAUGCCU&UUUUUUUCUUU-CCUUUCUUCU	4	0.999999999999842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN48873_c0_g1_1326_TPlot.pdf
TRINITY_DN48873_c0_g1:304	si_s5	TRINITY_DN48873_c0_g1	293	313	304	-21.70	-16.20	0.746543778801843	10.5	5-19,309-295	1-4,313-310[UP5];20-21,294-293[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGAGUGAUAAUAGGUAAGAAA&UAUAUUACUUAUUAUUACUAU	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN48873_c0_g1_304_TPlot.pdf
TRINITY_DN4887_c0_g1:1350	si_s459	TRINITY_DN4887_c0_g1	1339	1360	1350	-29.30	-20.50	0.699658703071672	9.5	1-7,1360-1354;9-18,1351-1342	8-8,1353-1352[AILt];19-21,1341-1339[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AGAGGAUGUGGGAGCAGUUGUU&AACAAUU-AUCUCAUAUCCAAC	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN4887_c0_g1_1350_TPlot.pdf
TRINITY_DN4887_c0_g1:1555	si_s248	TRINITY_DN4887_c0_g1	1543	1564	1555	-31.90	-20.90	0.655172413793103	7.5	3-15,1562-1550;17-21,1547-1543	1-2,1564-1563[UP5];16-16,1549-1548[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	UGGUAGAAUUGGGAAAUGCUGU&UAGGCAUUUCCCGAU-AUAUUA	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN4887_c0_g1_1555_TPlot.pdf
TRINITY_DN4887_c0_g1:1838	si_s810	TRINITY_DN4887_c0_g1	1823	1847	1838	-27.90	-18.40	0.659498207885305	9	1-3,1847-1845;5-16,1843-1832;17-21,1827-1823	4-4,1844-1844[SIL];x-x,1831-1828[BULt]	(((((....((((((((((((.(((&))).))))))))))))----)))))	UGUUAAAGUGGAAGAGGUGACCAAG&CUUCGUUACCUUUUCU----UAAUA	2	0.999995376455309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN4887_c0_g1_1838_TPlot.pdf
TRINITY_DN4887_c0_g1:1839	si_s809	TRINITY_DN4887_c0_g1	1828	1848	1839	-28.50	-19.80	0.694736842105263	8	1-4,1848-1845;6-17,1843-1832	5-5,1844-1844[SIL];18-21,1831-1828[UP3]	....((((((((((((.((((&)))).))))))))))))....	AAGUGGAAGAGGUGACCAAGA&UCUUCGUUACCUUUUCUUAAU	2	0.998453865591477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN4887_c0_g1_1839_TPlot.pdf
TRINITY_DN4887_c0_g1:1841	si_s807	TRINITY_DN4887_c0_g1	1830	1850	1841	-28.90	-19.80	0.685121107266436	9	3-6,1848-1845;8-19,1843-1832	1-2,1850-1849[UP5];7-7,1844-1844[SIL];20-21,1831-1830[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	GUGGAAGAGGUGACCAAGAAA&UAUCUUCGUUACCUUUUCUUA	2	0.99986516281768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4887_c0_g1_1841_TPlot.pdf
TRINITY_DN4887_c0_g1:2026	si_a761	TRINITY_DN4887_c0_g1	2015	2035	2026	-30.10	-19.70	0.654485049833887	10.5	1-3,2035-2033;5-18,2031-2018	4-4,2032-2032[SIL];19-21,2017-2015[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UAGCGAUCAGGAAUCUACGGG&CCUUUGGGUUUUUGAUUGAUU	2	0.999999576202239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4887_c0_g1_2026_TPlot.pdf
TRINITY_DN4887_c0_g1:2029	si_a758	TRINITY_DN4887_c0_g1	2018	2038	2029	-34.00	-26.10	0.767647058823529	7.5	1-6,2038-2033;8-21,2031-2018	7-7,2032-2032[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	CGAUCAGGAAUCUACGGGGGG&CCUCCUUUGGGUUUUUGAUUG	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN4887_c0_g1_2029_TPlot.pdf
TRINITY_DN4887_c0_g1:2030	si_a757	TRINITY_DN4887_c0_g1	2019	2039	2030	-33.10	-23.70	0.716012084592145	8.5	2-7,2038-2033;9-21,2031-2019	1-1,2039-2039[UP5];8-8,2032-2032[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GAUCAGGAAUCUACGGGGGGA&ACCUCCUUUGGGUUUUUGAUU	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4887_c0_g1_2030_TPlot.pdf
TRINITY_DN4887_c0_g1:2031	si_a756	TRINITY_DN4887_c0_g1	2020	2040	2031	-33.10	-22.50	0.6797583081571	9.5	3-8,2038-2033;10-21,2031-2020	1-2,2040-2039[UP5];9-9,2032-2032[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AUCAGGAAUCUACGGGGGGAG&AACCUCCUUUGGGUUUUUGAU	2	0.999570955846679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4887_c0_g1_2031_TPlot.pdf
TRINITY_DN4887_c0_g1:2042	si_s76	TRINITY_DN4887_c0_g1	2031	2051	2042	-23.60	-21.30	0.902542372881356	6.5	1-19,2051-2033	20-21,2032-2031[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	ACGGGGGGAGAGGAAGAAAAU&AUUUUUUUUCUUUCCUUUCUU	0	0.0544923193399256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4887_c0_g1_2042_TPlot.pdf
TRINITY_DN4887_c0_g1:2043	si_s75	TRINITY_DN4887_c0_g1	2032	2052	2043	-24.00	-21.80	0.908333333333333	5.5	1-20,2052-2033	21-21,2032-2032[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	CGGGGGGAGAGGAAGAAAAUG&UAUUUUUUUUCUUUCCUUUCU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4887_c0_g1_2043_TPlot.pdf
TRINITY_DN4887_c0_g1:2045	si_s73	TRINITY_DN4887_c0_g1	2034	2055	2045	-24.00	-20.40	0.85	6	1-3,2055-2053;4-21,2051-2034	x-x,2052-2052[BULt]	((((((((((((((((((.(((&)))-))))))))))))))))))	GGGGGAGAGGAAGAAAAUGAGA&UCU-AUUUUUUUUCUUUCCUUU	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN4887_c0_g1_2045_TPlot.pdf
TRINITY_DN4887_c0_g1:2046	si_s72	TRINITY_DN4887_c0_g1	2035	2056	2046	-24.10	-20.00	0.829875518672199	6	2-4,2055-2053;5-21,2051-2035	1-1,2056-2056[UP5];x-x,2052-2052[BULt]	(((((((((((((((((.(((.&.)))-)))))))))))))))))	GGGGAGAGGAAGAAAAUGAGAC&UUCU-AUUUUUUUUCUUUCCUU	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4887_c0_g1_2046_TPlot.pdf
TRINITY_DN4887_c0_g1:2047	si_s71	TRINITY_DN4887_c0_g1	2036	2057	2047	-25.70	-19.50	0.75875486381323	7.5	3-5,2055-2053;6-21,2051-2036	1-2,2057-2056[UP5];x-x,2052-2052[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	GGGAGAGGAAGAAAAUGAGACU&CUUCU-AUUUUUUUUCUUUCCU	4	0.99996904904156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4887_c0_g1_2047_TPlot.pdf
TRINITY_DN4887_c0_g1:2063	si_s80	TRINITY_DN4887_c0_g1	2040	2072	2063	-28.20	-19.60	0.695035460992908	28.5	2-12,2071-2061;13-21,2048-2040	1-1,2072-2072[UP5];x-x,2060-2049[BULt]	(((((((((............(((((((((((.&.)))))))))))------------)))))))))	GAGGAAGAAAAUGAGACUGUCGGGGAAGAAGAU&UUUUUCUUUCCU------------UUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4887_c0_g1_2063_TPlot.pdf
TRINITY_DN4887_c0_g1:994	si_a477	TRINITY_DN4887_c0_g1	983	1003	994	-21.50	-14.70	0.683720930232558	10.5	4-18,1000-986	1-3,1003-1001[UP5];19-21,985-983[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUAUCUGUAUGAUAAUAAGUU&UAAUUAUUGUUAUAUAGAAUA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN4887_c0_g1_994_TPlot.pdf
TRINITY_DN48894_c0_g1:1143	si_a769	TRINITY_DN48894_c0_g1	1132	1151	1143	-26.70	-19.40	0.726591760299625	7.5	1-7,1151-1145;10-19,1143-1134	8-9,1144-1144[AILq];20-21,1133-1132[UP3]	..((((((((((.-(((((((&)))))))..))))))))))..	UUGAGUUGGAUCU-UCAAGAA&UUUUUGAUUGAUUCAACUCUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN48894_c0_g1_1143_TPlot.pdf
TRINITY_DN48894_c0_g1:2512	si_s600	TRINITY_DN48894_c0_g1	2501	2521	2512	-28.20	-18.80	0.666666666666667	11	3-15,2519-2507	1-2,2521-2520[UP5];16-21,2506-2501[UP3]	......(((((((((((((..&..)))))))))))))......	GGGUGCGGGUUCGUUUGGAGA&AAUCCAAGCGAAUCUUUUUUA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN48894_c0_g1_2512_TPlot.pdf
TRINITY_DN48894_c0_g1:2768	si_s76	TRINITY_DN48894_c0_g1	2757	2777	2768	-23.60	-16.00	0.677966101694915	18	10-21,2768-2757	1-9,2777-2769[UP5]	((((((((((((.........&.........))))))))))))	GAGAGAGGAAAGCUUUUAACG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN48894_c0_g1_2768_TPlot.pdf
TRINITY_DN48894_c0_g1:2981	si_a399	TRINITY_DN48894_c0_g1	2970	2990	2981	-22.60	-15.70	0.694690265486726	10	2-16,2989-2975	1-1,2990-2990[UP5];17-21,2974-2970[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GCUGCCGGAACGGUUCUGUAC&AUAUAGAAUUGUUUUGUUUAU	3	0.99997765711207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN48894_c0_g1_2981_TPlot.pdf
TRINITY_DN48894_c0_g1:2982	si_a398	TRINITY_DN48894_c0_g1	2971	2991	2982	-22.40	-15.70	0.700892857142857	11	3-17,2989-2975	1-2,2991-2990[UP5];18-21,2974-2971[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUGCCGGAACGGUUCUGUACA&AAUAUAGAAUUGUUUUGUUUA	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN48894_c0_g1_2982_TPlot.pdf
TRINITY_DN48897_c0_g1:717	si_s77	TRINITY_DN48897_c0_g1	706	726	717	-25.50	-17.00	0.666666666666667	9.5	2-17,725-710	1-1,726-726[UP5];18-21,709-706[UP3]	....((((((((((((((((.&.))))))))))))))))....	UACAGAAGGAAAGAGGGAAGC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN48897_c0_g1_717_TPlot.pdf
TRINITY_DN48897_c0_g1:718	si_s76	TRINITY_DN48897_c0_g1	707	727	718	-23.60	-17.00	0.720338983050847	10.5	3-18,725-710	1-2,727-726[UP5];19-21,709-707[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACAGAAGGAAAGAGGGAAGCU&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN48897_c0_g1_718_TPlot.pdf
TRINITY_DN48897_c0_g1:75	si_a459	TRINITY_DN48897_c0_g1	64	84	75	-23.20	-15.10	0.650862068965517	11	1-14,84-71	15-21,70-64[UP3]	.......((((((((((((((&)))))))))))))).......	UUCAAGUUUGUGUAUGACGAC&GUUGUUAUAUAUAAUAUGUAA	2	0.998528954620462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN48897_c0_g1_75_TPlot.pdf
TRINITY_DN4889_c0_g1:1707	si_a319	TRINITY_DN4889_c0_g1	1697	1715	1707	-22.40	-14.80	0.660714285714286	5	1-9,1715-1707;12-21,1706-1697	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GAUAAAGAAA--AUGGAUAAA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN4889_c0_g1_1707_TPlot.pdf
TRINITY_DN4889_c0_g1:212	si_s760	TRINITY_DN4889_c0_g1	201	220	212	-25.20	-16.50	0.654761904761905	5.5	2-6,219-215;8-13,214-209;15-21,207-201	1-1,220-220[UP5];7-7,x-x[BULq];14-14,208-208[SIL]	(((((((.((((((-(((((.&.))))).)))))).)))))))	GUGAUUAUUUGUUG-UGUUUG&AAAACAACAACGAUUAAUUAC	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s760_TRINITY_DN4889_c0_g1_212_TPlot.pdf
TRINITY_DN4889_c0_g1:3127	si_s795	TRINITY_DN4889_c0_g1	3116	3136	3127	-30.30	-19.90	0.656765676567657	6.5	2-3,3135-3134;5-21,3132-3116	1-1,3136-3136[UP5];4-4,3133-3133[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	AUGAAGAUAGAAUAUGGUCUG&AAGCUCGUAUUUUAUCUUCGU	3	0.999996459327431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN4889_c0_g1_3127_TPlot.pdf
TRINITY_DN4889_c0_g1:3424	si_a441	TRINITY_DN4889_c0_g1	3413	3435	3424	-29.30	-19.10	0.651877133105802	7	1-4,3435-3432;5-5,3430-3430;6-21,3428-3413	x-x,3431-3431[BULt];x-x,3429-3429[BULt]	((((((((((((((((.(.((((&))))-)-))))))))))))))))	AACAAUUGUCUUAUAUACUCGAU&GUUG-G-AUAUGAGAUAAUUGUU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN4889_c0_g1_3424_TPlot.pdf
TRINITY_DN4889_c0_g1:3425	si_a440	TRINITY_DN4889_c0_g1	3414	3436	3425	-30.80	-20.70	0.672077922077922	7.5	1-5,3436-3432;6-6,3430-3430;7-21,3428-3414	x-x,3431-3431[BULt];x-x,3429-3429[BULt]	(((((((((((((((.(.(((((&)))))-)-)))))))))))))))	ACAAUUGUCUUAUAUACUCGAUG&CGUUG-G-AUAUGAGAUAAUUGU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN4889_c0_g1_3425_TPlot.pdf
TRINITY_DN4889_c0_g1:468	si_a326	TRINITY_DN4889_c0_g1	457	477	468	-26.20	-18.10	0.690839694656489	7.5	1-5,477-473;7-19,471-459	6-6,472-472[SIL];20-21,458-457[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AGUAGGGAGUAGAAAUGUCAU&AUGAUUUUUUUAUUCCUUGUC	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4889_c0_g1_468_TPlot.pdf
TRINITY_DN488_c0_g1:4009	si_a757	TRINITY_DN488_c0_g1	3998	4018	4009	-33.10	-22.70	0.685800604229607	8.5	1-15,4018-4004	16-21,4003-3998[UP3]	......(((((((((((((((&)))))))))))))))......	CGUAGUAGACCUGAAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN488_c0_g1_4009_TPlot.pdf
TRINITY_DN48900_c0_g1:1196	si_a356	TRINITY_DN48900_c0_g1	1185	1205	1196	-26.90	-17.90	0.66542750929368	16	6-10,1200-1196;12-21,1194-1185	1-5,1205-1201[UP5];11-11,1195-1195[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GUCCGGUCAGCGUGGGCUCAA&UUAAUUCUAUUUUGAUCGGAU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN48900_c0_g1_1196_TPlot.pdf
TRINITY_DN48900_c0_g1:1253	si_a838	TRINITY_DN48900_c0_g1	1243	1261	1253	-26.50	-17.90	0.675471698113208	5	1-7,1261-1255;9-10,1254-1253;12-21,1252-1243	8-8,x-x[BULq];11-11,x-x[BULq]	((((((((((-((-(((((((&))))))).)).))))))))))	AGUUGGCAGC-UC-AUUUUUU&AAAAAAUAGAAGUUGCUAACU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN48900_c0_g1_1253_TPlot.pdf
TRINITY_DN48912_c0_g1:1017	si_a502	TRINITY_DN48912_c0_g1	1006	1026	1017	-32.10	-22.40	0.697819314641745	10.5	1-16,1026-1011	17-21,1010-1006[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAGGAGGGGAGACGGGGGAC&GUUUUUCGUCUUCCUUGGAAU	4	0.999993141342267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN48912_c0_g1_1017_TPlot.pdf
TRINITY_DN48912_c0_g1:1018	si_a501	TRINITY_DN48912_c0_g1	1007	1027	1018	-33.50	-23.90	0.713432835820895	9	1-17,1027-1011	18-21,1010-1007[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAGGAGGGGAGACGGGGGACG&CGUUUUUCGUCUUCCUUGGAA	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN48912_c0_g1_1018_TPlot.pdf
TRINITY_DN48912_c0_g1:1019	si_a500	TRINITY_DN48912_c0_g1	1008	1028	1019	-34.40	-23.90	0.694767441860465	9	2-18,1027-1011	1-1,1028-1028[UP5];19-21,1010-1008[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AGGAGGGGAGACGGGGGACGC&UCGUUUUUCGUCUUCCUUGGA	4	0.999923241221074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN48912_c0_g1_1019_TPlot.pdf
TRINITY_DN48912_c0_g1:1024	si_a495	TRINITY_DN48912_c0_g1	1013	1033	1024	-31.90	-21.50	0.673981191222571	15	7-21,1027-1013	1-6,1033-1028[UP5]	(((((((((((((((......&......)))))))))))))))	GGGAGACGGGGGACGCCCGAG&AUAUGUCGUUUUUCGUCUUCC	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN48912_c0_g1_1024_TPlot.pdf
TRINITY_DN48919_c0_g1:2228	si_a116	TRINITY_DN48919_c0_g1	2217	2237	2228	-31.10	-23.30	0.7491961414791	11.5	5-20,2233-2218	1-4,2237-2234[UP5];21-21,2217-2217[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGCUAUGAAGCAGGCUUUCAA&AUACGAGCUUGUUUUAUAGCA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN48919_c0_g1_2228_TPlot.pdf
TRINITY_DN48922_c0_g1:568	si_a77	TRINITY_DN48922_c0_g1	557	577	568	-22.20	-15.60	0.702702702702703	9.5	4-18,574-560	1-3,577-575[UP5];19-21,559-557[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAGUAGUAAUGAAGAACAUGA&AAUUGUUUUUCAUUAUUAAGA	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN48922_c0_g1_568_TPlot.pdf
TRINITY_DN48922_c0_g1:569	si_a76	TRINITY_DN48922_c0_g1	558	578	569	-21.20	-15.60	0.735849056603774	10.5	5-19,574-560	1-4,578-575[UP5];20-21,559-558[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGUAGUAAUGAAGAACAUGAU&AAAUUGUUUUUCAUUAUUAAG	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN48922_c0_g1_569_TPlot.pdf
TRINITY_DN48922_c0_g1:571	si_a74	TRINITY_DN48922_c0_g1	560	580	571	-22.20	-16.78	0.755855855855856	7.5	1-3,580-578;7-21,574-560	4-6,577-575[SIL]	(((((((((((((((...(((&)))...)))))))))))))))	UAGUAAUGAAGAACAUGAUGA&UCAAAUUGUUUUUCAUUAUUA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN48922_c0_g1_571_TPlot.pdf
TRINITY_DN48922_c0_g1:572	si_a73	TRINITY_DN48922_c0_g1	561	581	572	-21.90	-16.28	0.74337899543379	7.5	1-4,581-578;8-21,574-561	5-7,577-575[SIL]	((((((((((((((...((((&))))...))))))))))))))	AGUAAUGAAGAACAUGAUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN48922_c0_g1_572_TPlot.pdf
TRINITY_DN48922_c0_g1:574	si_a71	TRINITY_DN48922_c0_g1	563	583	574	-23.30	-15.18	0.651502145922747	8.5	2-6,582-578;10-21,574-563	1-1,583-583[UP5];7-9,577-575[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	UAAUGAAGAACAUGAUGAAGA&CUUUCAAAUUGUUUUUCAUUA	2	0.999999996394785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN48922_c0_g1_574_TPlot.pdf
TRINITY_DN48922_c0_g1:603	si_a191	TRINITY_DN48922_c0_g1	592	612	603	-32.00	-21.30	0.665625	9.5	2-9,611-604;11-17,602-596	1-1,612-612[UP5];10-10,603-603[SIL];18-21,595-592[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AACGAGUGGAUUGGGAAGGAG&AUCUUUCCCUGUUCACUAAUA	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN48922_c0_g1_603_TPlot.pdf
TRINITY_DN48922_c0_g1:604	si_a190	TRINITY_DN48922_c0_g1	593	613	604	-32.00	-21.30	0.665625	10.5	3-10,611-604;12-18,602-596	1-2,613-612[UP5];11-11,603-603[SIL];19-21,595-593[UP3]	...(((((((.((((((((..&..)))))))).)))))))...	ACGAGUGGAUUGGGAAGGAGG&UAUCUUUCCCUGUUCACUAAU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN48922_c0_g1_604_TPlot.pdf
TRINITY_DN48922_c0_g1:607	si_a187	TRINITY_DN48922_c0_g1	596	616	607	-32.00	-20.90	0.653125	12	6-13,611-604;15-21,602-596	1-5,616-612[UP5];14-14,603-603[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	AGUGGAUUGGGAAGGAGGAGU&UAAUAUCUUUCCCUGUUCACU	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN48922_c0_g1_607_TPlot.pdf
TRINITY_DN48922_c0_g1:608	si_a793	TRINITY_DN48922_c0_g1	597	617	608	-28.50	-18.70	0.656140350877193	10.5	3-7,615-611;9-20,609-598	1-2,617-616[UP5];8-8,610-610[SIL];21-21,597-597[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	GUGGAUUGGGAAGGAGGAGUA&UUUUUCUAUUUUCCAAUCCGA	2	0.999700946789536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN48922_c0_g1_608_TPlot.pdf
TRINITY_DN48922_c0_g1:611	si_a333	TRINITY_DN48922_c0_g1	599	620	611	-30.60	-20.70	0.676470588235294	9.5	1-11,620-610;13-18,607-602	12-12,609-608[AILt];19-21,601-599[UP3]	...((((((..(((((((((((&)))))))))))-.))))))...	GGAUUGGGAAGGAGGAGUAAAA&UUUUAUUCCUU-GUCCCGAAAA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN48922_c0_g1_611_TPlot.pdf
TRINITY_DN48922_c0_g1:614	si_a330	TRINITY_DN48922_c0_g1	602	623	614	-30.50	-22.60	0.740983606557377	6	2-14,622-610;16-21,607-602	1-1,623-623[UP5];15-15,609-608[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	UUGGGAAGGAGGAGUAAAAGAG&UUUUUUUAUUCCUU-GUCCCGA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN48922_c0_g1_614_TPlot.pdf
TRINITY_DN48922_c0_g1:616	si_a328	TRINITY_DN48922_c0_g1	604	625	616	-30.10	-20.60	0.684385382059801	9.5	4-16,622-610;18-21,607-604	1-3,625-623[UP5];17-17,609-608[AILt]	((((..(((((((((((((...&...)))))))))))))-.))))	GGGAAGGAGGAGUAAAAGAGAU&GAUUUUUUUAUUCCUU-GUCCC	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN48922_c0_g1_616_TPlot.pdf
TRINITY_DN48922_c0_g1:652	si_a785	TRINITY_DN48922_c0_g1	641	661	652	-25.90	-19.70	0.760617760617761	5	1-6,661-656;8-9,654-653;11-21,651-641	7-7,655-655[SIL];10-10,652-652[SIL]	(((((((((((.((.((((((&)))))).)).)))))))))))	GAAAAUAGAAGCAUUGAAGAG&CUCUUCUAUUUUUCUAUUUUC	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN48922_c0_g1_652_TPlot.pdf
TRINITY_DN48922_c0_g1:653	si_a784	TRINITY_DN48922_c0_g1	642	662	653	-24.70	-16.70	0.676113360323887	6	2-7,661-656;9-10,654-653;12-21,651-642	1-1,662-662[UP5];8-8,655-655[SIL];11-11,652-652[SIL]	((((((((((.((.((((((.&.)))))).)).))))))))))	AAAAUAGAAGCAUUGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN48922_c0_g1_653_TPlot.pdf
TRINITY_DN48922_c0_g1:752	si_a319	TRINITY_DN48922_c0_g1	741	761	752	-22.40	-15.10	0.674107142857143	9	1-8,761-754;11-18,751-744	9-10,753-752[SIL];19-21,743-741[UP3]	...((((((((..((((((((&))))))))..))))))))...	GAAGAAGAAAUAUUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999998471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN48922_c0_g1_752_TPlot.pdf
TRINITY_DN48922_c0_g1:753	si_a318	TRINITY_DN48922_c0_g1	742	762	753	-22.50	-15.10	0.671111111111111	9	2-9,761-754;12-19,751-744	1-1,762-762[UP5];10-11,753-752[SIL];20-21,743-742[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	AAGAAGAAAUAUUGGAUGAAG&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999995242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN48922_c0_g1_753_TPlot.pdf
TRINITY_DN48922_c0_g1:789	si_a786	TRINITY_DN48922_c0_g1	777	799	789	-26.60	-19.70	0.740601503759398	5	1-9,799-791;10-14,789-785;16-21,782-777	x-x,790-790[BULt];15-15,784-783[AILt]	((((((..(((((.(((((((((&)))))))))-)))))-.))))))	GGAAAAGAAGAAAGGAUAGAAGA&UCUUCUAUU-UUUCU-AUUUUCC	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN48922_c0_g1_789_TPlot.pdf
TRINITY_DN48923_c0_g1:308	si_a325	TRINITY_DN48923_c0_g1	297	321	308	-25.90	-17.60	0.67953667953668	12.5	1-8,321-314;9-21,309-297	x-x,313-310[BULt]	(((((((((((((....((((((((&))))))))----)))))))))))))	AUAAGGAAUAGGAGGUAAAGUUAUG&CAUGAUUU----UUUUAUUCCUUGU	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN48923_c0_g1_308_TPlot.pdf
TRINITY_DN48927_c0_g1:2091	si_s805	TRINITY_DN48927_c0_g1	2080	2100	2091	-28.60	-19.80	0.692307692307692	6.5	2-12,2099-2089;15-20,2086-2081	1-1,2100-2100[UP5];13-14,2088-2087[SIL];21-21,2080-2080[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	CGAGAAGAAAGCGAAGAUGAU&UUUAUCUUCGUUACCUUUUCU	2	0.999368946623723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN48927_c0_g1_2091_TPlot.pdf
TRINITY_DN48927_c0_g1:2092	si_s804	TRINITY_DN48927_c0_g1	2081	2101	2092	-27.90	-19.50	0.698924731182796	7.5	3-13,2099-2089;16-21,2086-2081	1-2,2101-2100[UP5];14-15,2088-2087[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GAGAAGAAAGCGAAGAUGAUG&UUUUAUCUUCGUUACCUUUUC	4	0.999972084218589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN48927_c0_g1_2092_TPlot.pdf
TRINITY_DN4892_c0_g1:809	si_a497	TRINITY_DN4892_c0_g1	798	820	809	-32.00	-21.30	0.665625	9	1-9,820-812;10-18,809-801	x-x,811-810[BULt];19-21,800-798[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	UGAGAAGACGAAUUAGAUGACAU&AUGUCGUUU--UUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4892_c0_g1_809_TPlot.pdf
TRINITY_DN48935_c0_g1:2280	si_a496	TRINITY_DN48935_c0_g1	2268	2288	2280	-32.40	-21.60	0.666666666666667	7	3-4,2286-2285;6-13,2284-2277;14-21,2275-2268	1-2,2288-2287[UP5];5-5,x-x[BULq];x-x,2276-2276[BULt]	((((((((.((((((((-((..&..)).))))))))-))))))))	AGGGAGGCGGAAAAACG-CAGA&UAUGUCGUUUUUC-GUCUUCCU	3	0.99999999997699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN48935_c0_g1_2280_TPlot.pdf
TRINITY_DN48935_c0_g1:2359	si_a539	TRINITY_DN48935_c0_g1	2349	2368	2359	-32.70	-22.40	0.685015290519878	6.5	1-13,2368-2356;15-17,2355-2353	14-14,x-x[BULq];18-21,2352-2349[UP3]	....(((-(((((((((((((&))))))))))))).)))....	ACUGAGG-UGAACCGAUCGUU&AGCGAUCGGUUCAAUCUAUUU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN48935_c0_g1_2359_TPlot.pdf
TRINITY_DN48935_c0_g1:2361	si_a537	TRINITY_DN48935_c0_g1	2351	2370	2361	-36.20	-26.20	0.723756906077348	5.5	2-15,2369-2356;17-19,2355-2353	1-1,2370-2370[UP5];16-16,x-x[BULq];20-21,2352-2351[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	UGAGG-UGAACCGAUCGUUCU&CGAGCGAUCGGUUCAAUCUAU	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a537_TRINITY_DN48935_c0_g1_2361_TPlot.pdf
TRINITY_DN48935_c0_g1:2362	si_a536	TRINITY_DN48935_c0_g1	2352	2371	2362	-38.50	-26.20	0.680519480519481	6.5	3-16,2369-2356;18-20,2355-2353	1-2,2371-2370[UP5];17-17,x-x[BULq];21-21,2352-2352[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	GAGG-UGAACCGAUCGUUCUU&GCGAGCGAUCGGUUCAAUCUA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a536_TRINITY_DN48935_c0_g1_2362_TPlot.pdf
TRINITY_DN48935_c0_g1:3006	si_s555	TRINITY_DN48935_c0_g1	2995	3015	3006	-26.90	-18.10	0.672862453531599	13	7-20,3009-2996	1-6,3015-3010[UP5];21-21,2995-2995[UP3]	.((((((((((((((......&......)))))))))))))).	ACCCGAAAAUAUUGAAAAUAG&AUAGAAUUAAUAUUUUCGGGA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN48935_c0_g1_3006_TPlot.pdf
TRINITY_DN48935_c0_g1:3346	si_s491	TRINITY_DN48935_c0_g1	3335	3356	3346	-19.50	-13.60	0.697435897435897	4	1-7,3356-3350;8-19,3348-3337	x-x,3349-3349[BULt];20-21,3336-3335[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	UAUUUGUUUAUAUUGUAAAUAA&UUAUUUA-AAUAUAAACAAAAC	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN48935_c0_g1_3346_TPlot.pdf
TRINITY_DN48935_c0_g1:3347	si_s490	TRINITY_DN48935_c0_g1	3336	3357	3347	-17.80	-14.30	0.803370786516854	3	1-8,3357-3350;9-20,3348-3337	x-x,3349-3349[BULt];21-21,3336-3336[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	AUUUGUUUAUAUUGUAAAUAAA&UUUAUUUA-AAUAUAAACAAAA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN48935_c0_g1_3347_TPlot.pdf
TRINITY_DN48966_c0_g1:1122	si_a80	TRINITY_DN48966_c0_g1	1111	1130	1122	-22.10	-14.60	0.660633484162896	9.5	1-8,1130-1123;10-17,1122-1115	9-9,x-x[BULq];18-21,1114-1111[UP3]	....((((((((-((((((((&)))))))).))))))))....	CGUCCUUGAUAA-GAGGAGCA&UGUUUUUCAUUAUUAAGAAAA	2	0.999854708090646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN48966_c0_g1_1122_TPlot.pdf
TRINITY_DN48966_c0_g1:1123	si_a79	TRINITY_DN48966_c0_g1	1112	1131	1123	-22.20	-15.00	0.675675675675676	9	1-9,1131-1123;11-18,1122-1115	10-10,x-x[BULq];19-21,1114-1112[UP3]	...((((((((-(((((((((&))))))))).))))))))...	GUCCUUGAUAA-GAGGAGCAG&UUGUUUUUCAUUAUUAAGAAA	3	0.999998713244869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN48966_c0_g1_1123_TPlot.pdf
TRINITY_DN48966_c0_g1:1124	si_a77	TRINITY_DN48966_c0_g1	1114	1133	1124	-22.20	-15.00	0.675675675675676	10.5	3-11,1131-1123;13-20,1122-1115	1-2,1133-1132[UP5];12-12,x-x[BULq];21-21,1114-1114[UP3]	.((((((((-(((((((((..&..))))))))).)))))))).	CCUUGAUAA-GAGGAGCAGGA&AAUUGUUUUUCAUUAUUAAGA	3	0.999998789065877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN48966_c0_g1_1124_TPlot.pdf
TRINITY_DN48966_c0_g1:1255	si_s313	TRINITY_DN48966_c0_g1	1244	1263	1255	-30.80	-20.40	0.662337662337662	10	3-8,1261-1256;10-19,1255-1246	1-2,1263-1262[UP5];9-9,x-x[BULq];20-21,1245-1244[UP3]	..((((((((((-((((((..&..)))))).))))))))))..	CAAGCAGGAAGG-CAGGGUCA&AAAUUCUGUCCUUCUUGUUAC	3	0.999999618066212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN48966_c0_g1_1255_TPlot.pdf
TRINITY_DN48973_c0_g1:366	si_a783	TRINITY_DN48973_c0_g1	357	375	366	-24.70	-17.60	0.712550607287449	6.5	1-11,375-365;15-21,363-357	12-14,364-364[AILq]	(((((((.--(((((((((((&)))))))))))...)))))))	GAGUAGGU--GUAGAAGAGUU&AACUCUUCUAUUUUUCUAUUU	2	0.999769730032234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN48973_c0_g1_366_TPlot.pdf
TRINITY_DN48976_c0_g1:1089	si_s248	TRINITY_DN48976_c0_g1	1078	1100	1089	-31.90	-21.00	0.658307210031348	11.5	1-6,1100-1095;7-17,1092-1082	x-x,1094-1093[BULt];18-21,1081-1078[UP3]	....(((((((((((..((((((&))))))--)))))))))))....	UGCAGUGUCGGGAAGUCUGUCUG&UAGGCA--UUUCCCGAUAUAUUA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN48976_c0_g1_1089_TPlot.pdf
TRINITY_DN48976_c0_g1:1090	si_s247	TRINITY_DN48976_c0_g1	1079	1101	1090	-31.70	-22.60	0.712933753943218	11	1-7,1101-1095;8-18,1092-1082	x-x,1094-1093[BULt];19-21,1081-1079[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	GCAGUGUCGGGAAGUCUGUCUGU&AUAGGCA--UUUCCCGAUAUAUU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN48976_c0_g1_1090_TPlot.pdf
TRINITY_DN48976_c0_g1:1091	si_s246	TRINITY_DN48976_c0_g1	1080	1102	1091	-31.70	-22.90	0.722397476340694	11	2-8,1101-1095;9-19,1092-1082	1-1,1102-1102[UP5];x-x,1094-1093[BULt];20-21,1081-1080[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	CAGUGUCGGGAAGUCUGUCUGUG&AAUAGGCA--UUUCCCGAUAUAU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN48976_c0_g1_1091_TPlot.pdf
TRINITY_DN48976_c0_g1:1095	si_s244	TRINITY_DN48976_c0_g1	1082	1104	1095	-33.80	-22.40	0.662721893491124	13	4-10,1101-1095;11-21,1092-1082	1-3,1104-1102[UP5];x-x,1094-1093[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	GUGUCGGGAAGUCUGUCUGUGCU&UCAAUAGGCA--UUUCCCGAUAU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN48976_c0_g1_1095_TPlot.pdf
TRINITY_DN48976_c0_g1:1110	si_s235	TRINITY_DN48976_c0_g1	1099	1119	1110	-29.60	-20.18	0.681756756756757	6	1-11,1119-1109;15-20,1105-1100	12-14,1108-1106[SIL];21-21,1099-1099[UP3]	.((((((...(((((((((((&)))))))))))...)))))).	UGUGCUUCUGGAUUCCUUAUU&AAUAAGGAAUCAAUAGGCAUU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s235_TRINITY_DN48976_c0_g1_1110_TPlot.pdf
TRINITY_DN48976_c0_g1:1116	si_s229	TRINITY_DN48976_c0_g1	1105	1126	1116	-32.10	-20.90	0.651090342679128	10	2-5,1125-1122;7-17,1119-1109	1-1,1126-1126[UP5];6-6,1121-1120[AILt];18-21,1108-1105[UP3]	....(((((((((((..((((.&.))))-.)))))))))))....	UCUGGAUUCCUUAUUAUGCGCA&CGCGU-GAAUAAGGAAUCAAUA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s229_TRINITY_DN48976_c0_g1_1116_TPlot.pdf
TRINITY_DN48976_c0_g1:1182	si_s449	TRINITY_DN48976_c0_g1	1171	1191	1182	-23.60	-15.70	0.665254237288135	15.5	9-21,1183-1171	1-8,1191-1184[UP5]	(((((((((((((........&........)))))))))))))	GGAUAAUUGUUGUACACCAGA&UAUAUAUAACAACAAUUAUCU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN48976_c0_g1_1182_TPlot.pdf
TRINITY_DN48976_c0_g1:1348	si_s769	TRINITY_DN48976_c0_g1	1337	1356	1348	-27.00	-17.60	0.651851851851852	8	1-6,1356-1351;9-21,1349-1337	7-8,1350-1350[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GUAGUAAUAGUAAA-GGUUGU&ACGAUUAAUUACUAUUGCUAU	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN48976_c0_g1_1348_TPlot.pdf
TRINITY_DN48976_c0_g1:959	si_a733	TRINITY_DN48976_c0_g1	948	967	959	-44.60	-30.20	0.677130044843049	6	1-4,967-964;6-18,963-951	5-5,x-x[BULq];19-21,950-948[UP3]	...(((((((((((((-((((&)))).)))))))))))))...	GUCCCAGGGGUAAAGA-GUCC&GGGCAUCUUUACCCCUGGCCA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a733_TRINITY_DN48976_c0_g1_959_TPlot.pdf
TRINITY_DN48976_c0_g1:960	si_a732	TRINITY_DN48976_c0_g1	949	970	960	-45.40	-31.30	0.68942731277533	8	1-4,970-967;7-19,963-951	5-6,966-964[AILt];20-21,950-949[UP3]	..(((((((((((((...((((&))))-..)))))))))))))..	UCCCAGGGGUAAAGAGUCCCCG&CGGG-CAUCUUUACCCCUGGCC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a732_TRINITY_DN48976_c0_g1_960_TPlot.pdf
TRINITY_DN48976_c0_g1:962	si_a730	TRINITY_DN48976_c0_g1	951	972	962	-43.20	-31.30	0.724537037037037	9	3-6,970-967;9-21,963-951	1-2,972-971[UP5];7-8,966-964[AILt]	(((((((((((((...((((..&..))))-..)))))))))))))	CCAGGGGUAAAGAGUCCCCGUU&CUCGGG-CAUCUUUACCCCUGG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a730_TRINITY_DN48976_c0_g1_962_TPlot.pdf
TRINITY_DN48976_c0_g1:963	si_a729	TRINITY_DN48976_c0_g1	952	973	963	-41.60	-28.00	0.673076923076923	11	4-7,970-967;10-21,963-952	1-3,973-971[UP5];8-9,966-964[AILt]	((((((((((((...((((...&...))))-..))))))))))))	CAGGGGUAAAGAGUCCCCGUUC&ACUCGGG-CAUCUUUACCCCUG	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a729_TRINITY_DN48976_c0_g1_963_TPlot.pdf
TRINITY_DN48977_c0_g1:1159	si_a71	TRINITY_DN48977_c0_g1	1148	1170	1159	-23.30	-15.86	0.68068669527897	13.5	1-5,1170-1166;9-20,1160-1149	6-8,1165-1161[AILt];21-21,1148-1148[UP3]	.((((((((((((.....(((((&)))))--...)))))))))))).	CGAUGAGGAACAGCUGCGGAAAG&CUUUC--AAAUUGUUUUUCAUUA	3	0.999999989599644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN48977_c0_g1_1159_TPlot.pdf
TRINITY_DN48977_c0_g1:1475	si_s173	TRINITY_DN48977_c0_g1	1464	1483	1475	-39.70	-25.90	0.652392947103274	9.5	1-5,1483-1479;8-19,1477-1466	6-7,1478-1478[AILq];20-21,1465-1464[UP3]	..((((((((((((.-(((((&)))))..))))))))))))..	CAGCUUGGGCGUUUC-ACCCU&GGGGUAAAGAUGCCCGAGUAA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN48977_c0_g1_1475_TPlot.pdf
TRINITY_DN48977_c0_g1:175	si_a150	TRINITY_DN48977_c0_g1	156	184	175	-29.90	-19.70	0.658862876254181	21	1-11,184-174;12-18,166-160;19-21,158-156	x-x,173-167[BULt];x-x,159-159[BULt]	(((.(((((((.......(((((((((((&)))))))))))-------)))))))-)))	GAUGUGACCUUCAGCUCAGAAGCGGCGGC&GUUGUUGUUUU-------AAGGUCA-AUC	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN48977_c0_g1_175_TPlot.pdf
TRINITY_DN48977_c0_g1:352	si_s89	TRINITY_DN48977_c0_g1	341	363	352	-35.30	-24.20	0.685552407932011	8	1-3,363-361;4-14,358-348;16-20,346-342	x-x,360-359[BULt];15-15,347-347[SIL];21-21,341-341[UP3]	.(((((.(((((((((((..(((&)))--))))))))))).))))).	AGAAGCAAAGGAGAAGAACCGGG&CCU--UUCUUCUUCUUCGCUUCG	3	0.999999999137702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN48977_c0_g1_352_TPlot.pdf
TRINITY_DN48977_c0_g1:602	si_s79	TRINITY_DN48977_c0_g1	591	611	602	-26.20	-17.50	0.66793893129771	14	6-8,606-604;10-21,602-591	1-5,611-607[UP5];9-9,603-603[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GAGAGGGGAGGGCAGACUCGA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN48977_c0_g1_602_TPlot.pdf
TRINITY_DN48979_c0_g1:253	si_a20	TRINITY_DN48979_c0_g1	243	262	253	-26.70	-18.80	0.704119850187266	8	1-10,262-253;13-20,251-244	11-12,252-252[AILq];21-21,243-243[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	CGGGAUUGAC-GUAAAUAGGC&GCCUAUUUAUUUUUAGUUCUA	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN48979_c0_g1_253_TPlot.pdf
TRINITY_DN48979_c0_g1:254	si_a19	TRINITY_DN48979_c0_g1	244	263	254	-27.00	-18.70	0.692592592592593	7	2-11,262-253;14-21,251-244	1-1,263-263[UP5];12-13,252-252[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	GGGAUUGAC-GUAAAUAGGCA&AGCCUAUUUAUUUUUAGUUCU	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN48979_c0_g1_254_TPlot.pdf
TRINITY_DN48979_c0_g1:255	si_a18	TRINITY_DN48979_c0_g1	245	264	255	-26.30	-17.50	0.665399239543726	7.5	3-12,262-253;15-21,251-245	1-2,264-263[UP5];13-14,252-252[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	GGAUUGAC-GUAAAUAGGCAU&AAGCCUAUUUAUUUUUAGUUC	0	0.24622986848374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN48979_c0_g1_255_TPlot.pdf
TRINITY_DN4898_c0_g1:1511	si_s529	TRINITY_DN4898_c0_g1	1499	1520	1511	-30.30	-21.00	0.693069306930693	7.5	3-18,1518-1503;19-20,1501-1500	1-2,1520-1519[UP5];x-x,1502-1502[BULt];21-21,1499-1499[UP3]	.((.((((((((((((((((..&..))))))))))))))))-)).	CUGUGAUCAAGGAUGAUUUCAG&UCGAAAUCAUUUUUGAUC-CGA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN4898_c0_g1_1511_TPlot.pdf
TRINITY_DN49000_c0_g1:1016	si_s639	TRINITY_DN49000_c0_g1	1005	1029	1016	-40.60	-26.50	0.652709359605911	16	3-9,1027-1021;10-17,1016-1009	1-2,1029-1028[UP5];x-x,1020-1017[BULt];18-21,1008-1005[UP3]	....((((((((....(((((((..&..)))))))----))))))))....	AGGCCGAGGGCAGUAUGACGCCUCC&GUAGGCGUU----UGCCCUCGAUAC	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN49000_c0_g1_1016_TPlot.pdf
TRINITY_DN49001_c0_g1:1028	si_a314	TRINITY_DN49001_c0_g1	1017	1037	1028	-27.10	-17.70	0.653136531365314	9	1-5,1037-1033;8-12,1030-1026;15-19,1023-1019	6-7,1032-1031[SIL];13-14,1025-1024[SIL];20-21,1018-1017[UP3]	..(((((..(((((..(((((&)))))..)))))..)))))..	UUAAAUCUGGGAUAUUUCCGA&UUGGAUUUAUCCAUGAUUUUU	4	0.999999980084876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN49001_c0_g1_1028_TPlot.pdf
TRINITY_DN49001_c0_g1:1217	si_a123	TRINITY_DN49001_c0_g1	1206	1226	1217	-26.60	-17.70	0.665413533834586	7.5	1-3,1226-1224;5-14,1222-1213;16-19,1211-1208	4-4,1223-1223[SIL];15-15,1212-1212[SIL];20-21,1207-1206[UP3]	..((((.((((((((((.(((&))).)))))))))).))))..	ACACUGAUGCUGUAAAAGAGG&CUUGUUUUAUAGCAAUAGUAA	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN49001_c0_g1_1217_TPlot.pdf
TRINITY_DN49001_c0_g1:1219	si_a121	TRINITY_DN49001_c0_g1	1208	1228	1219	-29.30	-19.80	0.675767918088737	7.5	2-5,1227-1224;7-16,1222-1213;18-21,1211-1208	1-1,1228-1228[UP5];6-6,1223-1223[SIL];17-17,1212-1212[SIL]	((((.((((((((((.((((.&.)))).)))))))))).))))	ACUGAUGCUGUAAAAGAGGUA&AGCUUGUUUUAUAGCAAUAGU	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN49001_c0_g1_1219_TPlot.pdf
TRINITY_DN49001_c0_g1:1250	si_a762	TRINITY_DN49001_c0_g1	1242	1259	1250	-29.70	-20.50	0.69023569023569	5.5	1-14,1259-1246;18-21,1245-1242	15-17,x-x[BULq]	((((---((((((((((((((&))))))))))))))...))))	GAGU---UCAAGAACCCGAAG&CUUUGGGUUUUUGAUUGAUUC	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN49001_c0_g1_1250_TPlot.pdf
TRINITY_DN49001_c0_g1:1251	si_a761	TRINITY_DN49001_c0_g1	1240	1260	1251	-30.10	-19.90	0.661129568106312	9	2-15,1259-1246	1-1,1260-1260[UP5];16-21,1245-1240[UP3]	......((((((((((((((.&.))))))))))))))......	UGGAGUUCAAGAACCCGAAGU&CCUUUGGGUUUUUGAUUGAUU	3	0.999999999006427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN49001_c0_g1_1251_TPlot.pdf
TRINITY_DN49001_c0_g1:1481	si_s157	TRINITY_DN49001_c0_g1	1466	1489	1481	-45.20	-30.08	0.665486725663717	9	1-7,1489-1483;9-15,1482-1476;17-21,1470-1466	8-8,x-x[BULq];16-16,1475-1471[AILt]	(((((.....(((((((-(((((((&))))))).)))))))----.)))))	GCUCCGCAGAGGCCAUG-GCCUCCU&AGGAGGUUCAUGGCC----AGGGGU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN49001_c0_g1_1481_TPlot.pdf
TRINITY_DN49002_c0_g1:1865	si_a664	TRINITY_DN49002_c0_g1	1854	1874	1865	-29.60	-20.60	0.695945945945946	11	4-11,1871-1864;14-21,1861-1854	1-3,1874-1872[UP5];12-13,1863-1862[SIL]	((((((((..((((((((...&...))))))))..))))))))	GUGGGGAGCAGAUAGGCAAGU&AAAUGCCUAUUGAUUCCUUAU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN49002_c0_g1_1865_TPlot.pdf
TRINITY_DN49010_c0_g1:2474	si_s73	TRINITY_DN49010_c0_g1	2463	2483	2474	-24.00	-16.20	0.675	8	1-2,2483-2482;4-7,2480-2477;9-20,2475-2464	3-3,2481-2481[SIL];8-8,2476-2476[SIL];21-21,2463-2463[UP3]	.((((((((((((.((((.((&)).)))).)))))))))))).	CGAGGAGAGGAAACAAGUCGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN49010_c0_g1_2474_TPlot.pdf
TRINITY_DN49010_c0_g1:2475	si_s72	TRINITY_DN49010_c0_g1	2464	2484	2475	-24.10	-16.60	0.688796680497925	7	1-3,2484-2482;5-8,2480-2477;10-21,2475-2464	4-4,2481-2481[SIL];9-9,2476-2476[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	GAGGAGAGGAAACAAGUCGAG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN49010_c0_g1_2475_TPlot.pdf
TRINITY_DN49010_c0_g1:2484	si_a771	TRINITY_DN49010_c0_g1	2468	2493	2484	-29.40	-19.70	0.670068027210884	8.5	1-12,2493-2482;14-15,2480-2479;16-21,2473-2468	13-13,2481-2481[SIL];x-x,2478-2474[BULt]	((((((.....((.((((((((((((&)))))))))))).))-----))))))	AGAGGAAACAAGUCGAGUCAGUCAAA&UUUGAUUGAUUCAAC-----UCUUCU	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN49010_c0_g1_2484_TPlot.pdf
TRINITY_DN49010_c0_g1:2487	si_a768	TRINITY_DN49010_c0_g1	2476	2496	2487	-28.40	-21.50	0.757042253521127	5.5	1-15,2496-2482;17-19,2480-2478	16-16,2481-2481[SIL];20-21,2477-2476[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	CAAGUCGAGUCAGUCAAAGAC&GUUUUUGAUUGAUUCAACUCU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN49010_c0_g1_2487_TPlot.pdf
TRINITY_DN49010_c0_g1:2488	si_a767	TRINITY_DN49010_c0_g1	2477	2497	2488	-30.10	-22.60	0.750830564784053	5	1-16,2497-2482;18-20,2480-2478	17-17,2481-2481[SIL];21-21,2477-2477[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AAGUCGAGUCAGUCAAAGACU&GGUUUUUGAUUGAUUCAACUC	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN49010_c0_g1_2488_TPlot.pdf
TRINITY_DN49010_c0_g1:2489	si_a766	TRINITY_DN49010_c0_g1	2478	2498	2489	-30.50	-23.10	0.757377049180328	5	1-17,2498-2482;19-21,2480-2478	18-18,2481-2481[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	AGUCGAGUCAGUCAAAGACUU&GGGUUUUUGAUUGAUUCAACU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN49010_c0_g1_2489_TPlot.pdf
TRINITY_DN49010_c0_g1:2493	si_a762	TRINITY_DN49010_c0_g1	2482	2502	2493	-29.70	-20.90	0.703703703703704	11	5-21,2498-2482	1-4,2502-2499[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGUCAGUCAAAGACUUCAUC&CUUUGGGUUUUUGAUUGAUUC	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN49010_c0_g1_2493_TPlot.pdf
TRINITY_DN49010_c0_g1:2523	si_a502	TRINITY_DN49010_c0_g1	2511	2532	2523	-32.10	-21.50	0.669781931464174	8	2-10,2531-2523;12-14,2521-2519;15-21,2517-2511	1-1,2532-2532[UP5];11-11,2522-2522[SIL];x-x,2518-2518[BULt]	(((((((.(((.(((((((((.&.))))))))).)))-)))))))	AUUCCAAUGGGCGACGAGGGAA&GUUUUUCGUCUUCC-UUGGAAU	3	0.999999999919273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN49010_c0_g1_2523_TPlot.pdf
TRINITY_DN49010_c0_g1:2689	si_s687	TRINITY_DN49010_c0_g1	2678	2698	2689	-29.00	-19.40	0.668965517241379	7.5	1-5,2698-2694;7-10,2692-2689;12-19,2687-2680	6-6,2693-2693[SIL];11-11,2688-2688[SIL];20-21,2679-2678[UP3]	..((((((((.((((.(((((&))))).)))).))))))))..	CGCGACUGAUGGAACCCAUGU&ACAUGAGUUUAAUUAGUCGAU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s687_TRINITY_DN49010_c0_g1_2689_TPlot.pdf
TRINITY_DN49010_c0_g1:2691	si_s685	TRINITY_DN49010_c0_g1	2680	2700	2691	-27.80	-20.30	0.73021582733813	5.5	2-7,2699-2694;9-12,2692-2689;14-21,2687-2680	1-1,2700-2700[UP5];8-8,2693-2693[SIL];13-13,2688-2688[SIL]	((((((((.((((.((((((.&.)))))).)))).))))))))	CGACUGAUGGAACCCAUGUUC&AAACAUGAGUUUAAUUAGUCG	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s685_TRINITY_DN49010_c0_g1_2691_TPlot.pdf
TRINITY_DN49012_c0_g1:1466	si_a457	TRINITY_DN49012_c0_g1	1455	1477	1466	-23.50	-16.40	0.697872340425532	6.5	1-7,1477-1471;8-20,1468-1456	x-x,1470-1469[BULt];21-21,1455-1455[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	UCAUAUUGUAUAUAUUAUAACAA&UUGUUGU--UAUAUAUAAUAUGU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN49012_c0_g1_1466_TPlot.pdf
TRINITY_DN49012_c0_g1:1467	si_a456	TRINITY_DN49012_c0_g1	1456	1478	1467	-22.80	-17.20	0.754385964912281	5.5	1-8,1478-1471;9-21,1468-1456	x-x,1470-1469[BULt]	(((((((((((((..((((((((&))))))))--)))))))))))))	CAUAUUGUAUAUAUUAUAACAAU&AUUGUUGU--UAUAUAUAAUAUG	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN49012_c0_g1_1467_TPlot.pdf
TRINITY_DN49012_c0_g1:1468	si_a455	TRINITY_DN49012_c0_g1	1457	1479	1468	-21.10	-15.60	0.739336492890995	5.5	1-9,1479-1471;10-21,1468-1457	x-x,1470-1469[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	AUAUUGUAUAUAUUAUAACAAUU&AAUUGUUGU--UAUAUAUAAUAU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN49012_c0_g1_1468_TPlot.pdf
TRINITY_DN49012_c0_g1:1471	si_a454	TRINITY_DN49012_c0_g1	1458	1480	1471	-21.30	-14.50	0.68075117370892	6.5	2-10,1479-1471;11-21,1468-1458	1-1,1480-1480[UP5];x-x,1470-1469[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	UAUUGUAUAUAUUAUAACAAUUU&UAAUUGUUGU--UAUAUAUAAUA	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN49012_c0_g1_1471_TPlot.pdf
TRINITY_DN49012_c0_g1:529	si_s312	TRINITY_DN49012_c0_g1	517	538	529	-29.00	-19.60	0.675862068965517	8	1-12,538-527;13-17,525-521	x-x,526-526[BULt];18-21,520-517[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	CAUAAAGAAUGGACAGGGUUUU&AAAAUUCUGUCC-UUCUUGUUA	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN49012_c0_g1_529_TPlot.pdf
TRINITY_DN49012_c0_g1:532	si_s309	TRINITY_DN49012_c0_g1	520	543	532	-33.80	-22.20	0.656804733727811	8.5	1-4,543-540;5-15,537-527;16-20,525-521	x-x,539-538[BULt];x-x,526-526[BULt];21-21,520-520[UP3]	.(((((.(((((((((((..((((&))))--)))))))))))-))))).	AAAGAAUGGACAGGGUUUUGUCGU&GCGA--AAAUUCUGUCC-UUCUUG	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN49012_c0_g1_532_TPlot.pdf
TRINITY_DN49012_c0_g1:533	si_s308	TRINITY_DN49012_c0_g1	521	544	533	-32.80	-22.80	0.695121951219512	8	1-5,544-540;6-16,537-527;17-21,525-521	x-x,539-538[BULt];x-x,526-526[BULt]	(((((.(((((((((((..(((((&)))))--)))))))))))-)))))	AAGAAUGGACAGGGUUUUGUCGUA&UGCGA--AAAUUCUGUCC-UUCUU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN49012_c0_g1_533_TPlot.pdf
TRINITY_DN49012_c0_g1:537	si_s304	TRINITY_DN49012_c0_g1	526	548	537	-32.30	-21.50	0.665634674922601	11	3-9,546-540;10-20,537-527	1-2,548-547[UP5];x-x,539-538[BULt];21-21,526-526[UP3]	.(((((((((((..(((((((..&..)))))))--))))))))))).	UGGACAGGGUUUUGUCGUAGUGU&GAAUUGCGA--AAAUUCUGUCCU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN49012_c0_g1_537_TPlot.pdf
TRINITY_DN49012_c0_g1:684	si_a544	TRINITY_DN49012_c0_g1	673	693	684	-28.90	-19.26	0.66643598615917	11	1-5,693-689;10-20,684-674	6-9,688-685[SIL];21-21,673-673[UP3]	.(((((((((((....(((((&)))))....))))))))))).	GAGAGAAGUAGACUUUGCCGA&UCGGUUCAAUCUAUUUCUUUA	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN49012_c0_g1_684_TPlot.pdf
TRINITY_DN49012_c0_g1:685	si_a543	TRINITY_DN49012_c0_g1	674	694	685	-28.70	-18.86	0.657142857142857	11	2-6,693-689;11-21,684-674	1-1,694-694[UP5];7-10,688-685[SIL]	(((((((((((....(((((.&.)))))....)))))))))))	AGAGAAGUAGACUUUGCCGAA&AUCGGUUCAAUCUAUUUCUUU	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN49012_c0_g1_685_TPlot.pdf
TRINITY_DN49014_c0_g1:1760	si_a280	TRINITY_DN49014_c0_g1	1749	1769	1760	-32.10	-22.30	0.694704049844237	7	2-3,1768-1767;5-15,1765-1755;17-19,1753-1751	1-1,1769-1769[UP5];4-4,1766-1766[SIL];16-16,1754-1754[SIL];20-21,1750-1749[UP3]	..(((.(((((((((((.((.&.)).))))))))))).)))..	ACGUCGAGGCGAUCUUUGCGG&ACGAAAAGAUCGCUUGGAUUU	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN49014_c0_g1_1760_TPlot.pdf
TRINITY_DN49014_c0_g1:1761	si_a279	TRINITY_DN49014_c0_g1	1750	1776	1761	-32.50	-22.50	0.692307692307692	15	1-5,1776-1772;6-16,1765-1755;18-20,1753-1751	x-x,1771-1766[BULt];17-17,1754-1754[SIL];21-21,1750-1750[UP3]	.(((.(((((((((((......(((((&)))))------))))))))))).))).	CGUCGAGGCGAUCUUUGCGGACUCGUA&UACGA------AAAGAUCGCUUGGAUU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN49014_c0_g1_1761_TPlot.pdf
TRINITY_DN49015_c0_g1:1806	si_s297	TRINITY_DN49015_c0_g1	1795	1815	1806	-29.80	-21.20	0.711409395973154	10.5	1-14,1815-1802	15-21,1801-1795[UP3]	.......((((((((((((((&)))))))))))))).......	UGAUCAUGCGGUUCCAGUCGG&UCGAUUGGAAUUGCGAAAAUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN49015_c0_g1_1806_TPlot.pdf
TRINITY_DN49019_c0_g1:255	si_s86	TRINITY_DN49019_c0_g1	242	264	255	-32.90	-25.80	0.78419452887538	7.5	1-13,264-252;14-20,249-243	x-x,251-250[BULt];21-21,242-242[UP3]	.(((((((..(((((((((((((&)))))))))))))--))))))).	UGCGGAGGCUGGGAGGAGGGAAA&UUUCCUUUCUUCU--UCUUCGCU	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN49019_c0_g1_255_TPlot.pdf
TRINITY_DN49019_c0_g1:342	si_s746	TRINITY_DN49019_c0_g1	331	356	342	-27.00	-19.30	0.714814814814815	15.5	2-8,355-349;9-19,343-333	1-1,356-356[UP5];x-x,348-344[BULt];20-21,332-331[UP3]	..(((((((((((.....(((((((.&.)))))))-----)))))))))))..	UGGUUUUGAGGUCUCUGGGGUCUAUA&AAUAGAUU-----GACCUUAAAACAA	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN49019_c0_g1_342_TPlot.pdf
TRINITY_DN4901_c0_g1:2198	si_s820	TRINITY_DN4901_c0_g1	2188	2207	2198	-22.10	-14.80	0.669683257918552	6	2-14,2206-2194;18-21,2191-2188	1-1,2207-2207[UP5];15-17,2193-2192[AILq]	((((..-(((((((((((((.&.)))))))))))))...))))	UGUUGA-CAUUGUUAAGAAGU&UUUUCUUAAUAAUGAAAAACA	0	0.0671783811745034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN4901_c0_g1_2198_TPlot.pdf
TRINITY_DN4901_c0_g2:118	si_s585	TRINITY_DN4901_c0_g2	108	127	118	-27.00	-18.60	0.688888888888889	11.5	6-12,122-116;14-21,115-108	1-5,127-123[UP5];13-13,x-x[BULq]	((((((((-(((((((.....&.....))))))).))))))))	UGGAUUUG-CCAUGGUGUGGU&AAAAAAUCAUGGAUAAAUCCA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN4901_c0_g2_118_TPlot.pdf
TRINITY_DN49037_c0_g1:454	si_a791	TRINITY_DN49037_c0_g1	443	463	454	-26.50	-17.40	0.656603773584906	7.5	2-13,462-451;15-20,449-444	1-1,463-463[UP5];14-14,450-450[SIL];21-21,443-443[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UGGUUGGCAAGUGGGAGAAUU&UAUUUUUCUAUUUUCCAAUCC	3	0.99999996276671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN49037_c0_g1_454_TPlot.pdf
TRINITY_DN4903_c0_g1:2242	si_s42	TRINITY_DN4903_c0_g1	2230	2251	2242	-24.90	-16.20	0.650602409638554	7	1-6,2251-2246;8-12,2244-2240;13-20,2238-2231	7-7,2245-2245[SIL];x-x,2239-2239[BULt];21-21,2230-2230[UP3]	.((((((((.(((((.((((((&)))))).)))))-)))))))).	AUGGAAUCCAAGUUAAUAAAGG&UCUUUAAUAAUU-GGAUUUCAA	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN4903_c0_g1_2242_TPlot.pdf
TRINITY_DN4903_c0_g1:2917	si_s607	TRINITY_DN4903_c0_g1	2904	2926	2917	-27.60	-18.50	0.670289855072464	10.5	1-3,2926-2924;6-14,2921-2913;15-20,2910-2905	4-5,2923-2922[SIL];x-x,2912-2911[BULt];21-21,2904-2904[UP3]	.((((((..(((((((((..(((&)))..)))))))))--)))))).	AUGGAUUUCUGGAGGAGAGCCGC&GCGAAUCUUUUUUA--AAUCCAA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN4903_c0_g1_2917_TPlot.pdf
TRINITY_DN49040_c0_g1:502	si_s77	TRINITY_DN49040_c0_g1	490	511	502	-25.50	-17.30	0.67843137254902	5.5	1-13,511-499;14-18,497-493;20-21,491-490	x-x,498-498[BULt];19-19,492-492[SIL]	((.(((((.(((((((((((((&)))))))))))))-))))).))	GACGGGGGCGAAAGAAAAGGAA&UUUUUUUUCUUUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN49040_c0_g1_502_TPlot.pdf
TRINITY_DN49040_c0_g1:503	si_s76	TRINITY_DN49040_c0_g1	491	512	503	-23.60	-16.40	0.694915254237288	7.5	2-14,511-499;15-19,497-493	1-1,512-512[UP5];x-x,498-498[BULt];20-21,492-491[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	ACGGGGGCGAAAGAAAAGGAAA&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN49040_c0_g1_503_TPlot.pdf
TRINITY_DN49047_c0_g1:135	si_a757	TRINITY_DN49047_c0_g1	124	143	135	-33.10	-23.70	0.716012084592145	8.5	3-7,141-137;10-21,135-124	1-2,143-142[UP5];8-9,136-136[AILq]	((((((((((((.-(((((..&..)))))..))))))))))))	GAUCGAAGACCCU-AGGAGUC&ACCUCCUUUGGGUUUUUGAUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN49047_c0_g1_135_TPlot.pdf
TRINITY_DN49047_c0_g1:285	si_s81	TRINITY_DN49047_c0_g1	274	296	285	-28.90	-20.40	0.705882352941176	8.5	1-9,296-288;10-11,285-284;13-21,282-274	x-x,287-286[BULt];12-12,283-283[SIL]	(((((((((.((..(((((((((&)))))))))--)).)))))))))	GGAAGAAGAUGGUCGAAGGAAAA&UUUUCUUUC--CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN49047_c0_g1_285_TPlot.pdf
TRINITY_DN4904_c0_g1:2209	si_s899	TRINITY_DN4904_c0_g1	2198	2218	2209	-28.30	-25.70	0.908127208480565	4	2-20,2217-2199	1-1,2218-2218[UP5];21-21,2198-2198[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UGUUGGAAUUGAAGAGAGAGA&GCUUUCUCUUCAAUUUCAAUU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4904_c0_g1_2209_TPlot.pdf
TRINITY_DN4904_c0_g1:2210	si_s898	TRINITY_DN4904_c0_g1	2199	2219	2210	-30.70	-25.70	0.837133550488599	5	3-21,2217-2199	1-2,2219-2218[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GUUGGAAUUGAAGAGAGAGAC&GGCUUUCUCUUCAAUUUCAAU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN4904_c0_g1_2210_TPlot.pdf
TRINITY_DN4904_c0_g1:2212	si_s896	TRINITY_DN4904_c0_g1	2201	2221	2212	-31.60	-23.60	0.746835443037975	8.5	5-21,2217-2201	1-4,2221-2218[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGGAAUUGAAGAGAGAGACGG&UAGGCUUUCUCUUCAAUUUCA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4904_c0_g1_2212_TPlot.pdf
TRINITY_DN4904_c0_g1:2213	si_s895	TRINITY_DN4904_c0_g1	2202	2222	2213	-31.10	-22.10	0.710610932475884	10.5	6-21,2217-2202	1-5,2222-2218[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAAUUGAAGAGAGAGACGGG&AUAGGCUUUCUCUUCAAUUUC	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4904_c0_g1_2213_TPlot.pdf
TRINITY_DN4904_c0_g1:2214	si_s894	TRINITY_DN4904_c0_g1	2203	2223	2214	-29.10	-20.00	0.687285223367698	12.5	7-21,2217-2203	1-6,2223-2218[UP5]	(((((((((((((((......&......)))))))))))))))	GAAUUGAAGAGAGAGACGGGG&AAUAGGCUUUCUCUUCAAUUU	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4904_c0_g1_2214_TPlot.pdf
TRINITY_DN4904_c0_g1:2246	si_s290	TRINITY_DN4904_c0_g1	2234	2256	2246	-38.10	-25.80	0.677165354330709	9.5	1-5,2256-2252;7-10,2249-2246;11-21,2244-2234	6-6,2251-2250[AILt];x-x,2245-2245[BULt]	(((((((((((.((((..(((((&)))))-.))))-)))))))))))	GCGAUUUCGAUAUGACGAGGGCG&CGCCU-AGUCG-AUUGGAAUUGC	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN4904_c0_g1_2246_TPlot.pdf
TRINITY_DN4904_c0_g1:3538	si_s87	TRINITY_DN4904_c0_g1	3527	3547	3538	-32.90	-24.20	0.735562310030395	7	1-4,3547-3544;6-8,3542-3540;11-21,3537-3527	5-5,3543-3543[SIL];9-10,3539-3538[SIL]	(((((((((((..(((.((((&)))).)))..)))))))))))	AAGCGAAGAAGCUGAAUGGGA&UUCCUUUCUUCUUCUUCGCUU	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN4904_c0_g1_3538_TPlot.pdf
TRINITY_DN4904_c0_g1:3539	si_s86	TRINITY_DN4904_c0_g1	3528	3548	3539	-32.90	-23.80	0.723404255319149	7.5	1-5,3548-3544;7-9,3542-3540;12-21,3537-3528	6-6,3543-3543[SIL];10-11,3539-3538[SIL]	((((((((((..(((.(((((&))))).)))..))))))))))	AGCGAAGAAGCUGAAUGGGAG&UUUCCUUUCUUCUUCUUCGCU	3	0.99999863267643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4904_c0_g1_3539_TPlot.pdf
TRINITY_DN4904_c0_g1:3540	si_s797	TRINITY_DN4904_c0_g1	3527	3549	3540	-30.00	-20.58	0.686	13.5	1-4,3549-3546;6-10,3544-3540;13-20,3535-3528	5-5,3545-3545[SIL];11-12,3539-3536[AILt];21-21,3527-3527[UP3]	.((((((((....(((((.((((&)))).)))))--..)))))))).	AAGCGAAGAAGCUGAAUGGGAGC&GCUCGUAUUU--UAUCUUCGUUA	2	0.997392228208699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN4904_c0_g1_3540_TPlot.pdf
TRINITY_DN4904_c0_g1:3555	si_a447	TRINITY_DN4904_c0_g1	3544	3564	3555	-25.70	-17.40	0.67704280155642	11.5	4-12,3561-3553;14-18,3551-3547	1-3,3564-3562[UP5];13-13,3552-3552[SIL];19-21,3546-3544[UP3]	...(((((.(((((((((...&...))))))))).)))))...	GGGAGCAAGGAUUGUCUCGCG&UAUGAGAUAAUUGUUGUUAUA	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN4904_c0_g1_3555_TPlot.pdf
TRINITY_DN4904_c0_g1:4117	si_s78	TRINITY_DN4904_c0_g1	4106	4126	4117	-26.20	-20.50	0.782442748091603	6	2-13,4125-4114;15-20,4112-4107	1-1,4126-4126[UP5];14-14,4113-4113[SIL];21-21,4106-4106[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UGAAGAAUGGGAAGAAAAGGC&UUUUUUUCUUUCCUUUCUUCU	4	0.999999411941571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4904_c0_g1_4117_TPlot.pdf
TRINITY_DN4904_c0_g1:4118	si_s77	TRINITY_DN4904_c0_g1	4107	4127	4118	-25.50	-20.10	0.788235294117647	7	3-14,4125-4114;16-21,4112-4107	1-2,4127-4126[UP5];15-15,4113-4113[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GAAGAAUGGGAAGAAAAGGCG&UUUUUUUUCUUUCCUUUCUUC	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4904_c0_g1_4118_TPlot.pdf
TRINITY_DN4904_c0_g1:4758	si_a63	TRINITY_DN4904_c0_g1	4747	4768	4758	-30.20	-20.20	0.66887417218543	9	2-6,4767-4763;8-13,4760-4755;16-21,4752-4747	1-1,4768-4768[UP5];7-7,4762-4761[AILt];14-15,4754-4753[SIL]	((((((..((((((..(((((.&.)))))-.))))))..))))))	GGCAAUGAGAAGGAUCGCGAGG&ACUCGC-UUCUUUCAAAUUGUU	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN4904_c0_g1_4758_TPlot.pdf
TRINITY_DN4904_c0_g1:5407	si_a398	TRINITY_DN4904_c0_g1	5396	5416	5407	-22.40	-15.20	0.678571428571429	13.5	5-18,5412-5399	1-4,5416-5413[UP5];19-21,5398-5396[UP3]	...((((((((((((((....&....))))))))))))))...	GAUGCGAAGCGGUUCUACGAA&AAUAUAGAAUUGUUUUGUUUA	3	0.999999706441462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4904_c0_g1_5407_TPlot.pdf
TRINITY_DN4904_c0_g1:5550	si_a502	TRINITY_DN4904_c0_g1	5539	5562	5550	-32.10	-21.60	0.672897196261682	12.5	1-7,5562-5556;8-18,5552-5542	x-x,5555-5553[BULt];19-21,5541-5539[UP3]	...(((((((((((...(((((((&)))))))---)))))))))))...	GGACCGGGGAGGACAUAGAAGAAU&GUUUUUC---GUCUUCCUUGGAAU	4	0.999999999792055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN4904_c0_g1_5550_TPlot.pdf
TRINITY_DN4904_c0_g1:5556	si_a326	TRINITY_DN4904_c0_g1	5544	5565	5556	-26.20	-17.10	0.652671755725191	7	2-13,5564-5553;14-18,5551-5547;20-21,5545-5544	1-1,5565-5565[UP5];x-x,5552-5552[BULt];19-19,5546-5546[SIL]	((.(((((.((((((((((((.&.))))))))))))-))))).))	GGGGAGGACAUAGAAGAAUUAA&AUGAUUUUUUUAU-UCCUUGUC	2	0.999999961154362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4904_c0_g1_5556_TPlot.pdf
TRINITY_DN4904_c0_g1:5794	si_s536	TRINITY_DN4904_c0_g1	5783	5803	5794	-27.70	-18.10	0.653429602888087	11	1-13,5803-5791	14-21,5790-5783[UP3]	........(((((((((((((&)))))))))))))........	UCCGAAUCCGGGUCAAGGAUG&CAUUUUUGAUCCGAUCAAAAU	2	0.989088653046503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN4904_c0_g1_5794_TPlot.pdf
TRINITY_DN4904_c0_g1:5795	si_s535	TRINITY_DN4904_c0_g1	5784	5804	5795	-28.60	-19.70	0.688811188811189	10	1-14,5804-5791	15-21,5790-5784[UP3]	.......((((((((((((((&)))))))))))))).......	CCGAAUCCGGGUCAAGGAUGA&UCAUUUUUGAUCCGAUCAAAA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN4904_c0_g1_5795_TPlot.pdf
TRINITY_DN4904_c0_g1:5797	si_s533	TRINITY_DN4904_c0_g1	5786	5806	5797	-28.80	-19.70	0.684027777777778	10.5	3-16,5804-5791	1-2,5806-5805[UP5];17-21,5790-5786[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAAUCCGGGUCAAGGAUGAGA&AAUCAUUUUUGAUCCGAUCAA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN4904_c0_g1_5797_TPlot.pdf
TRINITY_DN4904_c0_g1:5800	si_s530	TRINITY_DN4904_c0_g1	5789	5809	5800	-29.50	-19.70	0.667796610169492	13.5	6-19,5804-5791	1-5,5809-5805[UP5];20-21,5790-5789[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCCGGGUCAAGGAUGAGAACA&CGAAAUCAUUUUUGAUCCGAU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN4904_c0_g1_5800_TPlot.pdf
TRINITY_DN4904_c0_g1:5801	si_s529	TRINITY_DN4904_c0_g1	5790	5810	5801	-30.30	-19.70	0.65016501650165	14.5	7-20,5804-5791	1-6,5810-5805[UP5];21-21,5790-5790[UP3]	.((((((((((((((......&......)))))))))))))).	CCGGGUCAAGGAUGAGAACAA&UCGAAAUCAUUUUUGAUCCGA	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN4904_c0_g1_5801_TPlot.pdf
TRINITY_DN4904_c0_g1:5803	si_a328	TRINITY_DN4904_c0_g1	5792	5813	5803	-30.10	-20.50	0.681063122923588	9	1-5,5813-5809;6-9,5807-5804;12-17,5801-5796;19-21,5794-5792	x-x,5808-5808[BULt];10-11,5803-5802[SIL];18-18,5795-5795[SIL]	(((.((((((..((((.(((((&)))))-))))..)))))).)))	GGGUCAAGGAUGAGAACAAGUC&GAUUU-UUUUAUUCCUUGUCCC	3	0.999944438983975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN4904_c0_g1_5803_TPlot.pdf
TRINITY_DN49062_c0_g1:432	si_s79	TRINITY_DN49062_c0_g1	421	441	432	-26.20	-19.20	0.732824427480916	6.5	2-10,440-432;12-20,430-422	1-1,441-441[UP5];11-11,431-431[SIL];21-21,421-421[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UAGAAGAGAGUGAAGAAAGAC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN49062_c0_g1_432_TPlot.pdf
TRINITY_DN49063_c0_g1:926	si_s784	TRINITY_DN49063_c0_g1	915	935	926	-31.10	-20.68	0.664951768488746	9	1-6,935-930;10-19,926-917	7-9,929-927[SIL];20-21,916-915[UP3]	..((((((((((...((((((&))))))...))))))))))..	GCAUGGGCUUGUGGAAUAGCA&UGCUAUAAAACAAGCUCGUAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s784_TRINITY_DN49063_c0_g1_926_TPlot.pdf
TRINITY_DN49063_c0_g1:927	si_s783	TRINITY_DN49063_c0_g1	916	936	927	-31.00	-21.08	0.68	8.5	1-7,936-930;11-20,926-917	8-10,929-927[SIL];21-21,916-916[UP3]	.((((((((((...(((((((&)))))))...)))))))))).	CAUGGGCUUGUGGAAUAGCAG&UUGCUAUAAAACAAGCUCGUA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s783_TRINITY_DN49063_c0_g1_927_TPlot.pdf
TRINITY_DN49063_c0_g1:928	si_s782	TRINITY_DN49063_c0_g1	917	937	928	-30.70	-22.18	0.722475570032573	8	1-8,937-930;12-21,926-917	9-11,929-927[SIL]	((((((((((...((((((((&))))))))...))))))))))	AUGGGCUUGUGGAAUAGCAGU&AUUGCUAUAAAACAAGCUCGU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s782_TRINITY_DN49063_c0_g1_928_TPlot.pdf
TRINITY_DN49063_c0_g1:929	si_s781	TRINITY_DN49063_c0_g1	918	938	929	-30.30	-20.78	0.685808580858086	9.5	2-9,937-930;13-20,926-919	1-1,938-938[UP5];10-12,929-927[SIL];21-21,918-918[UP3]	.((((((((...((((((((.&.))))))))...)))))))).	UGGGCUUGUGGAAUAGCAGUC&UAUUGCUAUAAAACAAGCUCG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s781_TRINITY_DN49063_c0_g1_929_TPlot.pdf
TRINITY_DN49063_c0_g1:930	si_s780	TRINITY_DN49063_c0_g1	919	939	930	-30.50	-20.08	0.658360655737705	9.5	3-10,937-930;14-21,926-919	1-2,939-938[UP5];11-13,929-927[SIL]	((((((((...((((((((..&..))))))))...))))))))	GGGCUUGUGGAAUAGCAGUCA&CUAUUGCUAUAAAACAAGCUC	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s780_TRINITY_DN49063_c0_g1_930_TPlot.pdf
TRINITY_DN49068_c0_g1:131	si_a73	TRINITY_DN49068_c0_g1	120	140	131	-21.90	-15.00	0.684931506849315	8.5	1-12,140-129;15-18,126-123	13-14,128-127[SIL];19-21,122-120[UP3]	...((((..((((((((((((&))))))))))))..))))...	AUAGAUGCUGAGCAGUUUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN49068_c0_g1_131_TPlot.pdf
TRINITY_DN49068_c0_g1:134	si_a70	TRINITY_DN49068_c0_g1	123	143	134	-23.90	-15.60	0.652719665271967	7.5	3-15,141-129;18-21,126-123	1-2,143-142[UP5];16-17,128-127[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GAUGCUGAGCAGUUUGAAAAA&UCUUUCAAAUUGUUUUUCAUU	3	0.999999999999758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN49068_c0_g1_134_TPlot.pdf
TRINITY_DN49071_c0_g1:802	si_a876	TRINITY_DN49071_c0_g1	791	811	802	-27.30	-18.30	0.67032967032967	10	1-13,811-799	14-21,798-791[UP3]	........(((((((((((((&)))))))))))))........	UAAUUUACUGCAGCUAGAUCU&AGAUUUAGUUGCAAUCAAUAU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a876_TRINITY_DN49071_c0_g1_802_TPlot.pdf
TRINITY_DN49079_c0_g1:600	si_a290	TRINITY_DN49079_c0_g1	589	609	600	-27.20	-18.20	0.669117647058823	8	2-3,608-607;5-8,605-602;10-19,600-591	1-1,609-609[UP5];4-4,606-606[SIL];9-9,601-601[SIL];20-21,590-589[UP3]	..((((((((((.((((.((.&.)).)))).))))))))))..	UUUCUUUUUUGAUUCCAUGCA&CGCUUGGAUUUAAAAAAGAUU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a290_TRINITY_DN49079_c0_g1_600_TPlot.pdf
TRINITY_DN49084_c0_g1:584	si_s632	TRINITY_DN49084_c0_g1	572	593	584	-38.20	-27.10	0.709424083769634	8	1-12,593-582;13-20,580-573	x-x,581-581[BULt];21-21,572-572[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	UGGCGAAUGACUUGCGGAAGGA&UCUUUUCGUAGG-CGUUUGCCC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN49084_c0_g1_584_TPlot.pdf
TRINITY_DN49098_c0_g1:689	si_a816	TRINITY_DN49098_c0_g1	677	698	689	-32.30	-22.70	0.702786377708978	4	2-18,697-681;19-21,679-677	1-1,698-698[UP5];x-x,680-680[BULt]	(((.(((((((((((((((((.&.)))))))))))))))))-)))	UCUCUUCCUUUUUUUUUCUUCC&CGAAGAAGAAGAAAGGAA-AGA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN49098_c0_g1_689_TPlot.pdf
TRINITY_DN490_c0_g1:1078	si_s1	TRINITY_DN490_c0_g1	1067	1087	1078	-18.70	-13.30	0.711229946524064	11.5	4-17,1084-1071	1-3,1087-1085[UP5];18-21,1070-1067[UP3]	....((((((((((((((...&...))))))))))))))....	UAAGAAUGAGUAGUGUAAUAA&UUUUUAUAUUACUUAUUAUUA	2	0.99751887635167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN490_c0_g1_1078_TPlot.pdf
TRINITY_DN490_c0_g1:1113	si_a479	TRINITY_DN490_c0_g1	1102	1122	1113	-23.00	-15.70	0.682608695652174	7	1-17,1122-1106	18-21,1105-1102[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUUUUUUGUAUAACGAUGAU&AUUAUUGUUAUAUAGAAUAUG	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN490_c0_g1_1113_TPlot.pdf
TRINITY_DN490_c0_g1:1116	si_a476	TRINITY_DN490_c0_g1	1105	1125	1116	-22.90	-15.90	0.694323144104804	9	4-20,1122-1106	1-3,1125-1123[UP5];21-21,1105-1105[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UUUUUGUAUAACGAUGAUAAA&GUAAUUAUUGUUAUAUAGAAU	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN490_c0_g1_1116_TPlot.pdf
TRINITY_DN49103_c0_g1:1035	si_s421	TRINITY_DN49103_c0_g1	1024	1045	1035	-23.00	-15.20	0.660869565217391	7	2-6,1044-1040;7-19,1038-1026	1-1,1045-1045[UP5];x-x,1039-1039[BULt];20-21,1025-1024[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	AGUAUUGUUAUAUGGUGAUAUC&CAUAUU-CUAUAUAACAAUAAU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN49103_c0_g1_1035_TPlot.pdf
TRINITY_DN49103_c0_g1:1342	si_a418	TRINITY_DN49103_c0_g1	1329	1351	1342	-21.20	-14.70	0.693396226415094	8	3-15,1349-1337;16-21,1334-1329	1-2,1351-1350[UP5];x-x,1336-1335[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AUCCUAAAUAUUUGUUUAGGUUA&AUAUUUAAAUAAAUA--UAGGAU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN49103_c0_g1_1342_TPlot.pdf
TRINITY_DN49103_c0_g1:1400	si_s16	TRINITY_DN49103_c0_g1	1389	1410	1400	-25.60	-16.70	0.65234375	8.5	1-5,1410-1406;7-11,1403-1399;13-20,1397-1390	6-6,1405-1404[AILt];12-12,1398-1398[SIL];21-21,1389-1389[UP3]	.((((((((.(((((..(((((&)))))-.))))).)))))))).	CUGCAGUCAUUAUAGCCAAUGA&UUAUU-ACUAUAUUGAUUGCAA	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN49103_c0_g1_1400_TPlot.pdf
TRINITY_DN49108_c0_g1:684	si_a513	TRINITY_DN49108_c0_g1	673	695	684	-39.50	-27.00	0.683544303797468	7.5	1-8,695-688;9-19,685-675	x-x,687-686[BULt];20-21,674-673[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	AACUGCCUUACAUGCUUCAAGGA&UCCUUGGA--AUGUAAGGCGGAC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN49108_c0_g1_684_TPlot.pdf
TRINITY_DN49108_c0_g1:685	si_a512	TRINITY_DN49108_c0_g1	674	696	685	-37.80	-27.40	0.724867724867725	7	1-9,696-688;10-20,685-675	x-x,687-686[BULt];21-21,674-674[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	ACUGCCUUACAUGCUUCAAGGAG&UUCCUUGGA--AUGUAAGGCGGA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN49108_c0_g1_685_TPlot.pdf
TRINITY_DN49108_c0_g1:691	si_a508	TRINITY_DN49108_c0_g1	678	708	691	-36.30	-24.10	0.663911845730028	19	1-5,708-704;6-13,695-688;14-21,685-678	x-x,703-696[BULt];x-x,687-686[BULt]	((((((((..((((((((........(((((&)))))--------))))))))--))))))))	CCUUACAUGCUUCAAGGAGCCAAUGCAGACG&CGUCU--------UCCUUGGA--AUGUAAGG	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN49108_c0_g1_691_TPlot.pdf
TRINITY_DN4910_c0_g1:1500	si_s92	TRINITY_DN4910_c0_g1	1488	1509	1500	-34.90	-23.40	0.670487106017192	8.5	4-17,1506-1493;19-21,1490-1488	1-3,1509-1507[UP5];18-18,1492-1491[AILt]	(((..((((((((((((((...&...))))))))))))))-.)))	AUCGGGAGGCGGAGAAGAAACC&UUCUUCUUCUUCGCUUC-GGAU	2	0.999999861744563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4910_c0_g1_1500_TPlot.pdf
TRINITY_DN49116_c0_g1:516	si_a465	TRINITY_DN49116_c0_g1	505	525	516	-20.90	-15.70	0.751196172248804	6	2-17,524-509	1-1,525-525[UP5];18-21,508-505[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUAAAUUACAUAUUGUAUAG&AUAUAUAAUAUGUAAUUAUUG	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN49116_c0_g1_516_TPlot.pdf
TRINITY_DN49116_c0_g1:517	si_a464	TRINITY_DN49116_c0_g1	506	526	517	-19.60	-15.70	0.801020408163265	7	3-18,524-509	1-2,526-525[UP5];19-21,508-506[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUAAAUUACAUAUUGUAUAGU&UAUAUAUAAUAUGUAAUUAUU	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN49116_c0_g1_517_TPlot.pdf
TRINITY_DN49116_c0_g1:518	si_a463	TRINITY_DN49116_c0_g1	507	527	518	-19.70	-15.70	0.796954314720812	8	4-19,524-509	1-3,527-525[UP5];20-21,508-507[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAAAUUACAUAUUGUAUAGUU&UUAUAUAUAAUAUGUAAUUAU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN49116_c0_g1_518_TPlot.pdf
TRINITY_DN49116_c0_g1:519	si_a462	TRINITY_DN49116_c0_g1	508	528	519	-21.20	-15.70	0.740566037735849	9	5-20,524-509	1-4,528-525[UP5];21-21,508-508[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAUUACAUAUUGUAUAGUUU&GUUAUAUAUAAUAUGUAAUUA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN49116_c0_g1_519_TPlot.pdf
TRINITY_DN49116_c0_g1:521	si_a460	TRINITY_DN49116_c0_g1	510	530	521	-21.60	-14.50	0.671296296296296	12	7-21,524-510	1-6,530-525[UP5]	(((((((((((((((......&......)))))))))))))))	AUUACAUAUUGUAUAGUUUAU&UUGUUAUAUAUAAUAUGUAAU	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN49116_c0_g1_521_TPlot.pdf
TRINITY_DN49116_c0_g1:536	si_s486	TRINITY_DN49116_c0_g1	525	545	536	-18.10	-12.68	0.700552486187845	5	1-12,545-534;16-21,530-525	13-15,533-531[SIL]	((((((...((((((((((((&))))))))))))...))))))	GUUUAUUGAUGAAUAAAUGUA&UAUAUUUAUUUAAAUAUAAAC	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN49116_c0_g1_536_TPlot.pdf
TRINITY_DN4911_c0_g1:1229	si_a665	TRINITY_DN4911_c0_g1	1218	1237	1229	-29.60	-20.30	0.685810810810811	9.5	3-7,1235-1231;9-18,1230-1221	1-2,1237-1236[UP5];8-8,x-x[BULq];19-21,1220-1218[UP3]	...((((((((((-(((((..&..))))).))))))))))...	AAAAAGGAGUCGA-AGGCACG&AAUGCCUAUUGAUUCCUUAUU	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN4911_c0_g1_1229_TPlot.pdf
TRINITY_DN4911_c0_g1:1230	si_a664	TRINITY_DN4911_c0_g1	1219	1238	1230	-29.60	-20.30	0.685810810810811	10.5	4-8,1235-1231;10-19,1230-1221	1-3,1238-1236[UP5];9-9,x-x[BULq];20-21,1220-1219[UP3]	..((((((((((-(((((...&...))))).))))))))))..	AAAAGGAGUCGA-AGGCACGU&AAAUGCCUAUUGAUUCCUUAU	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN4911_c0_g1_1230_TPlot.pdf
TRINITY_DN4911_c0_g1:1231	si_a663	TRINITY_DN4911_c0_g1	1220	1239	1231	-31.40	-22.00	0.700636942675159	8.5	1-2,1239-1238;5-9,1235-1231;11-20,1230-1221	3-4,1237-1236[SIL];10-10,x-x[BULq];21-21,1220-1220[UP3]	.((((((((((-(((((..((&))..))))).)))))))))).	AAAGGAGUCGA-AGGCACGUC&GAAAUGCCUAUUGAUUCCUUA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN4911_c0_g1_1231_TPlot.pdf
TRINITY_DN4911_c0_g1:1251	si_a639	TRINITY_DN4911_c0_g1	1240	1261	1251	-23.60	-15.40	0.652542372881356	11.5	1-4,1261-1258;5-15,1256-1246	x-x,1257-1257[BULt];16-21,1245-1240[UP3]	......(((((((((((.((((&))))-)))))))))))......	GUGAGAUGCUCAAGAGACGUCG&CGAU-UUUUUUGAGUAAUAUAU	2	0.999998700922394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN4911_c0_g1_1251_TPlot.pdf
TRINITY_DN4912_c0_g1:2270	si_s803	TRINITY_DN4912_c0_g1	2256	2279	2270	-26.00	-17.00	0.653846153846154	7.5	2-15,2278-2265;16-19,2261-2258	1-1,2279-2279[UP5];x-x,2264-2262[BULt];20-21,2257-2256[UP3]	..((((...((((((((((((((.&.))))))))))))))---))))..	CCGAGGAAAUAAUGAAGAUAAAAC&AUUUUAUCUUCGUUA---CCUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN4912_c0_g1_2270_TPlot.pdf
TRINITY_DN4912_c0_g1:2275	si_s798	TRINITY_DN4912_c0_g1	2264	2282	2275	-29.30	-19.40	0.662116040955631	5.5	1-5,2282-2278;8-20,2277-2265	6-7,x-x[BULq];21-21,2264-2264[UP3]	.(((((((((((((--(((((&)))))..))))))))))))).	AUAAUGAAGAUAAA--ACGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN4912_c0_g1_2275_TPlot.pdf
TRINITY_DN4912_c0_g1:2388	si_a725	TRINITY_DN4912_c0_g1	2379	2402	2388	-38.10	-25.50	0.669291338582677	14.5	1-6,2402-2397;7-16,2391-2382;19-21,2381-2379	x-x,2396-2392[BULt];17-18,x-x[BULq]	(((--((((((((((.....((((((&))))))-----))))))))))..)))	GGU--GGAUGCCCGACACAGGUGGCG&CGUUAC-----UCGGGCAUCUUUACC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN4912_c0_g1_2388_TPlot.pdf
TRINITY_DN4912_c0_g1:2397	si_a721	TRINITY_DN4912_c0_g1	2381	2406	2397	-35.10	-23.00	0.655270655270655	20.5	5-10,2402-2397;11-20,2391-2382	1-4,2406-2403[UP5];x-x,2396-2392[BULt];21-21,2381-2381[UP3]	.((((((((((.....((((((....&....))))))-----)))))))))).	UGGAUGCCCGACACAGGUGGCGCUAA&UAAUCGUUAC-----UCGGGCAUCUU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN4912_c0_g1_2397_TPlot.pdf
TRINITY_DN4913_c0_g1:3178	si_s121	TRINITY_DN4913_c0_g1	3167	3187	3178	-27.00	-17.60	0.651851851851852	15	9-21,3179-3167	1-8,3187-3180[UP5]	(((((((((((((........&........)))))))))))))	AUUCAACUCUUCUCCUCCAGC&AGAAAAAUAGAAGAGUUGAAU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN4913_c0_g1_3178_TPlot.pdf
TRINITY_DN4913_c0_g1:3410	si_s306	TRINITY_DN4913_c0_g1	3399	3416	3410	-32.30	-21.14	0.654489164086687	10.5	2-6,3415-3411;11-21,3409-3399	1-1,3416-3416[UP5];7-10,3410-3410[AILq]	(((((((((((.---(((((.&.)))))....)))))))))))	GGAGGACAGAAG---CGCAGG&AUUGCGAAAAUUCUGUCCUUC	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN4913_c0_g1_3410_TPlot.pdf
TRINITY_DN4913_c0_g1:3709	si_a57	TRINITY_DN4913_c0_g1	3698	3721	3709	-36.60	-24.00	0.655737704918033	10.5	1-9,3721-3713;10-13,3709-3706;15-20,3704-3699	x-x,3712-3710[BULt];14-14,3705-3705[SIL];21-21,3698-3698[UP3]	.((((((.((((...(((((((((&)))))))))---)))).)))))).	GUGGGAGCGGUGGUCAGUCGACUC&GAGUCGACU---CGCUUCUUUCAA	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN4913_c0_g1_3709_TPlot.pdf
TRINITY_DN4913_c0_g1:3715	si_a54	TRINITY_DN4913_c0_g1	3698	3724	3715	-37.30	-24.60	0.659517426273459	19	3-12,3722-3713;13-19,3706-3700	1-2,3724-3723[UP5];x-x,3712-3707[BULt];20-21,3699-3698[UP3]	..(((((((......((((((((((..&..))))))))))------)))))))..	GUGGGAGCGGUGGUCAGUCGACUCUAC&UAGGAGUCGACU------CGCUUCUUU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN4913_c0_g1_3715_TPlot.pdf
TRINITY_DN4913_c0_g1:3815	si_a779	TRINITY_DN4913_c0_g1	3804	3824	3815	-27.00	-17.70	0.655555555555556	9	3-6,3822-3819;9-20,3816-3805	1-2,3824-3823[UP5];7-8,3818-3817[SIL];21-21,3804-3804[UP3]	.((((((((((((..((((..&..))))..)))))))))))).	CGAGAAAUGGAAGUCUUGACU&AUUCAACUCUUCUAUUUUUCU	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN4913_c0_g1_3815_TPlot.pdf
TRINITY_DN4913_c0_g1:3816	si_a778	TRINITY_DN4913_c0_g1	3805	3825	3816	-28.30	-18.70	0.660777385159011	7	1-2,3825-3824;4-7,3822-3819;10-21,3816-3805	3-3,3823-3823[SIL];8-9,3818-3817[SIL]	((((((((((((..((((.((&)).))))..))))))))))))	GAGAAAUGGAAGUCUUGACUC&GAUUCAACUCUUCUAUUUUUC	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN4913_c0_g1_3816_TPlot.pdf
TRINITY_DN4913_c0_g1:4225	si_a55	TRINITY_DN4913_c0_g1	4215	4235	4225	-38.90	-25.50	0.655526992287918	7	3-7,4233-4229;8-12,4227-4223;14-21,4222-4215	1-2,4235-4234[UP5];x-x,4228-4228[BULt];13-13,x-x[BULq]	((((((((-(((((.(((((..&..)))))-))))).))))))))	GGAGGAAG-GAGUCAGACUCGA&AGGAGUC-GACUCGCUUCUUUC	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN4913_c0_g1_4225_TPlot.pdf
TRINITY_DN49142_c0_g1:557	si_a356	TRINITY_DN49142_c0_g1	546	567	557	-26.90	-17.50	0.650557620817844	13	5-8,563-560;9-19,558-548	1-4,567-564[UP5];x-x,559-559[BULt];20-21,547-546[UP3]	..(((((((((((.((((....&....))))-)))))))))))..	AGCCGAUCAAGAUGAGAGGAGU&UUAAUUCU-AUUUUGAUCGGAU	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN49142_c0_g1_557_TPlot.pdf
TRINITY_DN49149_c0_g1:158	si_s184	TRINITY_DN49149_c0_g1	146	167	158	-33.40	-23.00	0.688622754491018	9	1-11,167-157;12-14,155-153	x-x,156-156[BULt];15-21,152-146[UP3]	.......(((.(((((((((((&)))))))))))-))).......	UAACCGCAUCAGUUACUCGGGC&GCCCGAGUAAC-GAUUAUUUUG	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN49149_c0_g1_158_TPlot.pdf
TRINITY_DN49156_c0_g1:394	si_a499	TRINITY_DN49156_c0_g1	383	403	394	-35.20	-23.40	0.664772727272727	11	4-19,400-385;21-21,383-383	1-3,403-401[UP5];20-20,384-384[SIL]	(.((((((((((((((((...&...)))))))))))))))).)	CGGAGGAGGAUGAGGGACCCA&GUCGUUUUUCGUCUUCCUUGG	4	0.99999999996887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN49156_c0_g1_394_TPlot.pdf
TRINITY_DN49159_c0_g1:443	si_a190	TRINITY_DN49159_c0_g1	430	452	443	-32.00	-22.30	0.696875	11	1-12,452-441;13-18,438-433	x-x,440-439[BULt];19-21,432-430[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	GAGGGUGAAGCUAGGGAGGGAUG&UAUCUUUCCCUG--UUCACUAAU	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN49159_c0_g1_443_TPlot.pdf
TRINITY_DN49159_c0_g1:447	si_a186	TRINITY_DN49159_c0_g1	434	456	447	-31.50	-21.30	0.676190476190476	7.5	1-3,456-454;5-16,452-441;17-21,438-434	4-4,453-453[SIL];x-x,440-439[BULt]	(((((..((((((((((((.(((&))).))))))))))))--)))))	GUGAAGCUAGGGAGGGAUGGUAU&AUAAUAUCUUUCCCUG--UUCAC	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN49159_c0_g1_447_TPlot.pdf
TRINITY_DN4915_c0_g1:3433	si_a445	TRINITY_DN4915_c0_g1	3422	3446	3433	-27.30	-18.30	0.67032967032967	13.5	1-8,3446-3439;9-19,3434-3424	x-x,3438-3435[BULt];20-21,3423-3422[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	UUGCGACAGUUAUUAGGCUUAUGUC&GAUAUGAG----AUAAUUGUUGUUA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN4915_c0_g1_3433_TPlot.pdf
TRINITY_DN49165_c0_g1:341	si_s93	TRINITY_DN49165_c0_g1	329	350	341	-34.80	-22.90	0.658045977011494	7.5	1-2,350-349;4-14,347-337;15-21,335-329	3-3,348-348[SIL];x-x,336-336[BULt]	(((((((.(((((((((((.((&)).)))))))))))-)))))))	AGUCUGGCAGUGAGGGAGACGA&UCUUCUUCUUCGCU-UCGGAUU	4	0.999999999999938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN49165_c0_g1_341_TPlot.pdf
TRINITY_DN49165_c0_g1:349	si_a499	TRINITY_DN49165_c0_g1	338	363	349	-35.20	-23.00	0.653409090909091	18	1-4,363-360;7-19,352-340	5-6,359-353[AILt];20-21,339-338[UP3]	..(((((((((((((.......((((&))))-----..)))))))))))))..	GUGAGGGAGACGAGAUCUCGUUCGAC&GUCG-----UUUUUCGUCUUCCUUGG	4	0.9999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN49165_c0_g1_349_TPlot.pdf
TRINITY_DN49165_c0_g1:352	si_a496	TRINITY_DN49165_c0_g1	341	366	352	-32.40	-21.70	0.669753086419753	20.5	4-7,363-360;10-21,352-341	1-3,366-364[UP5];8-9,359-353[AILt]	((((((((((((.......((((...&...))))-----..))))))))))))	AGGGAGACGAGAUCUCGUUCGACGAG&UAUGUCG-----UUUUUCGUCUUCCU	3	0.999999999878981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN49165_c0_g1_352_TPlot.pdf
TRINITY_DN4916_c0_g1:1539	si_a149	TRINITY_DN4916_c0_g1	1529	1548	1539	-29.40	-22.50	0.76530612244898	9.5	1-11,1548-1538;13-18,1537-1532	12-12,x-x[BULq];19-21,1531-1529[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GGCGGCCUU-GGACGACGACG&CGUUGUUGUUUUAAGGUCAAU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN4916_c0_g1_1539_TPlot.pdf
TRINITY_DN4916_c0_g1:1877	si_a451	TRINITY_DN4916_c0_g1	1866	1886	1877	-23.60	-16.20	0.686440677966102	9	2-14,1885-1873;16-18,1871-1869	1-1,1886-1886[UP5];15-15,1872-1872[SIL];19-21,1868-1866[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	AACGUGCGGCAACAGUUGUCA&AGAUAAUUGUUGUUAUAUAUA	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN4916_c0_g1_1877_TPlot.pdf
TRINITY_DN4916_c0_g1:1893	si_a318	TRINITY_DN4916_c0_g1	1882	1902	1893	-22.50	-14.80	0.657777777777778	8.5	1-4,1902-1899;6-17,1897-1886	5-5,1898-1898[SIL];18-21,1885-1882[UP3]	....((((((((((((.((((&)))).))))))))))))....	UGUCAAGAAUCAUGGACAGGU&AUUUAUCCAUGAUUUUUUUAU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN4916_c0_g1_1893_TPlot.pdf
TRINITY_DN4916_c0_g1:1894	si_a317	TRINITY_DN4916_c0_g1	1883	1903	1894	-24.30	-16.10	0.662551440329218	8	1-5,1903-1899;7-18,1897-1886	6-6,1898-1898[SIL];19-21,1885-1883[UP3]	...((((((((((((.(((((&))))).))))))))))))...	GUCAAGAAUCAUGGACAGGUU&GAUUUAUCCAUGAUUUUUUUA	4	0.999999998027039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN4916_c0_g1_1894_TPlot.pdf
TRINITY_DN4916_c0_g1:2388	si_a450	TRINITY_DN4916_c0_g1	2377	2397	2388	-25.20	-16.40	0.650793650793651	5	1-13,2397-2385;15-20,2383-2378	14-14,2384-2384[SIL];21-21,2377-2377[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UUAUGUAUUAAUAAUUAUUUC&GAGAUAAUUGUUGUUAUAUAU	2	0.999048429896903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN4916_c0_g1_2388_TPlot.pdf
TRINITY_DN4916_c0_g1:2389	si_a449	TRINITY_DN4916_c0_g1	2378	2398	2389	-25.70	-17.10	0.665369649805448	4	1-14,2398-2385;16-21,2383-2378	15-15,2384-2384[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UAUGUAUUAAUAAUUAUUUCA&UGAGAUAAUUGUUGUUAUAUA	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN4916_c0_g1_2389_TPlot.pdf
TRINITY_DN4916_c0_g1:2390	si_a448	TRINITY_DN4916_c0_g1	2379	2399	2390	-25.50	-16.60	0.650980392156863	4	1-15,2399-2385;17-21,2383-2379	16-16,2384-2384[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AUGUAUUAAUAAUUAUUUCAU&AUGAGAUAAUUGUUGUUAUAU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN4916_c0_g1_2390_TPlot.pdf
TRINITY_DN49179_c0_g1:161	si_s89	TRINITY_DN49179_c0_g1	149	170	161	-35.30	-23.90	0.677053824362606	5	2-16,169-155;18-20,152-150	1-1,170-170[UP5];17-17,154-153[AILt];21-21,149-149[UP3]	.(((..(((((((((((((((.&.)))))))))))))))-.))).	GGAAAUCGAAGAGGAAGAAAGA&CCUUUCUUCUUCUUCG-CUUCG	2	0.999999835427854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN49179_c0_g1_161_TPlot.pdf
TRINITY_DN49179_c0_g1:613	si_a789	TRINITY_DN49179_c0_g1	602	622	613	-24.80	-16.50	0.665322580645161	6	1-9,622-614;11-18,612-605	10-10,613-613[SIL];19-21,604-602[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UAGGGAAAAUGAAAAAAUAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999991637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN49179_c0_g1_613_TPlot.pdf
TRINITY_DN49179_c0_g1:818	si_s71	TRINITY_DN49179_c0_g1	807	826	818	-25.70	-17.20	0.669260700389105	7	1-5,826-822;7-19,821-809	6-6,x-x[BULq];20-21,808-807[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	CAGAAGGAGAAAAAG-AGAGG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN49179_c0_g1_818_TPlot.pdf
TRINITY_DN49179_c0_g1:820	si_s69	TRINITY_DN49179_c0_g1	809	828	820	-23.40	-17.20	0.735042735042735	8	3-7,826-822;9-21,821-809	1-2,828-827[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAGGAGAAAAAG-AGAGGAG&AACUUCUAUUUUUUUUCUUUC	3	0.999999999814868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN49179_c0_g1_820_TPlot.pdf
TRINITY_DN4917_c0_g3:1772	si_a495	TRINITY_DN4917_c0_g3	1761	1781	1772	-31.90	-21.10	0.661442006269593	7.5	1-7,1781-1775;9-11,1773-1771;12-15,1769-1766;17-21,1765-1761	8-8,1774-1774[SIL];x-x,1770-1770[BULt];16-16,x-x[BULq]	(((((-((((.(((.(((((((&))))))).)))-)))).)))))	GGAAG-CGGAUGAAGGACAUGU&AUAUGUCGUUU-UUCGUCUUCC	4	0.999999999827311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN4917_c0_g3_1772_TPlot.pdf
TRINITY_DN4917_c0_g3:2320	si_a487	TRINITY_DN4917_c0_g3	2309	2329	2320	-24.80	-16.50	0.665322580645161	8.5	3-16,2327-2314	1-2,2329-2328[UP5];17-21,2313-2309[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUAUCGAUAUAUUCUAUACA&UAUAUAGAAUAUGUCGUUUUU	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN4917_c0_g3_2320_TPlot.pdf
TRINITY_DN4917_c0_g3:2323	si_a484	TRINITY_DN4917_c0_g3	2312	2332	2323	-27.30	-19.10	0.6996336996337	6.5	2-4,2331-2329;6-19,2327-2314	1-1,2332-2332[UP5];5-5,2328-2328[SIL];20-21,2313-2312[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AUCGAUAUAUUCUAUACAGCG&UGUUAUAUAGAAUAUGUCGUU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN4917_c0_g3_2323_TPlot.pdf
TRINITY_DN4917_c0_g3:2324	si_a483	TRINITY_DN4917_c0_g3	2313	2333	2324	-27.40	-19.10	0.697080291970803	7.5	3-5,2331-2329;7-20,2327-2314	1-2,2333-2332[UP5];6-6,2328-2328[SIL];21-21,2313-2313[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	UCGAUAUAUUCUAUACAGCGU&UUGUUAUAUAGAAUAUGUCGU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN4917_c0_g3_2324_TPlot.pdf
TRINITY_DN4917_c0_g3:2497	si_a799	TRINITY_DN4917_c0_g3	2486	2508	2497	-32.50	-21.30	0.655384615384615	16	6-9,2503-2500;11-20,2496-2487	1-5,2508-2504[UP5];10-10,2499-2497[AILt];21-21,2486-2486[UP3]	.((((((((((...((((.....&.....))))--.)))))))))).	GUCGCUUCGGACGAUGGACAAAG&UAUUUUCCA--AUCCGAAGCGAA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN4917_c0_g3_2497_TPlot.pdf
TRINITY_DN4917_c0_g3:3086	si_a197	TRINITY_DN4917_c0_g3	3075	3095	3086	-32.80	-21.40	0.652439024390244	5.5	1-3,3095-3093;5-16,3091-3080;19-21,3077-3075	4-4,3092-3092[SIL];17-18,3079-3078[SIL]	(((..((((((((((((.(((&))).))))))))))))..)))	UUGUGUUAUUAGUGAAUUGGG&CCCUGUUCACUAAUAAAUCGA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a197_TRINITY_DN4917_c0_g3_3086_TPlot.pdf
TRINITY_DN4917_c0_g3:3087	si_a196	TRINITY_DN4917_c0_g3	3076	3096	3087	-32.80	-21.60	0.658536585365854	5.5	1-4,3096-3093;6-17,3091-3080;20-21,3077-3076	5-5,3092-3092[SIL];18-19,3079-3078[SIL]	((..((((((((((((.((((&)))).))))))))))))..))	UGUGUUAUUAGUGAAUUGGGA&UCCCUGUUCACUAAUAAAUCG	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a196_TRINITY_DN4917_c0_g3_3087_TPlot.pdf
TRINITY_DN4917_c0_g3:3091	si_a192	TRINITY_DN4917_c0_g3	3080	3100	3091	-31.90	-21.70	0.68025078369906	8	4-8,3097-3093;10-21,3091-3080	1-3,3100-3098[UP5];9-9,3092-3092[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UUAUUAGUGAAUUGGGAAUGU&UCUUUCCCUGUUCACUAAUAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN4917_c0_g3_3091_TPlot.pdf
TRINITY_DN4917_c0_g3:3110	si_s438	TRINITY_DN4917_c0_g3	3099	3119	3110	-21.20	-15.00	0.707547169811321	13	5-8,3115-3112;11-21,3109-3099	1-4,3119-3116[UP5];9-10,3111-3110[SIL]	(((((((((((..((((....&....))))..)))))))))))	GUUGUGUAUGAGUUGUAGACA&UAAUUACAUAUUAUAUAUAAC	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN4917_c0_g3_3110_TPlot.pdf
TRINITY_DN4917_c0_g3:3214	si_s198	TRINITY_DN4917_c0_g3	3204	3223	3214	-30.80	-20.40	0.662337662337662	9.5	5-13,3219-3211;15-20,3210-3205	1-4,3223-3220[UP5];14-14,x-x[BULq];21-21,3204-3204[UP3]	.((((((-(((((((((....&....))))))))).)))))).	AAACUGG-GCAUUCCAAUGUU&UAUUUUGGAAUGUACCAGUUG	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN4917_c0_g3_3214_TPlot.pdf
TRINITY_DN49185_c0_g1:1197	si_a71	TRINITY_DN49185_c0_g1	1186	1205	1197	-23.30	-16.50	0.708154506437768	7.5	1-7,1205-1199;9-17,1198-1190	8-8,x-x[BULq];18-21,1189-1186[UP3]	....(((((((((-(((((((&))))))).)))))))))....	AAUCGAAGAACAA-UUGAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN49185_c0_g1_1197_TPlot.pdf
TRINITY_DN49185_c0_g1:1278	si_s411	TRINITY_DN49185_c0_g1	1267	1289	1278	-27.70	-18.20	0.657039711191336	8.5	1-1,1289-1289;3-9,1287-1281;10-20,1278-1268	2-2,1288-1288[SIL];x-x,1280-1279[BULt];21-21,1267-1267[UP3]	.(((((((((((..(((((((.(&).)))))))--))))))))))).	AGUAGAAUAUGUGAUGUUUUUGG&CGAAAAACG--ACAUAUUCUAUA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s411_TRINITY_DN49185_c0_g1_1278_TPlot.pdf
TRINITY_DN49185_c0_g1:1821	si_a792	TRINITY_DN49185_c0_g1	1810	1830	1821	-27.60	-18.20	0.659420289855072	7	1-8,1830-1823;11-19,1820-1812	9-10,1822-1821[SIL];20-21,1811-1810[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	AAGAUUGGAAAUAAGAGAAAU&AUUUUUCUAUUUUCCAAUCCG	4	0.99999948044527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN49185_c0_g1_1821_TPlot.pdf
TRINITY_DN49185_c0_g1:884	si_s803	TRINITY_DN49185_c0_g1	869	893	884	-26.00	-17.90	0.688461538461538	14.5	4-11,890-883;12-20,878-870	1-3,893-891[UP5];x-x,882-879[BULt];21-21,869-869[UP3]	.(((((((((....((((((((...&...))))))))----))))))))).	UGAAGGUAACUCUUGAAGAUAAUGA&AUUUUAUCUUC----GUUACCUUUU	3	0.999999983093593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN49185_c0_g1_884_TPlot.pdf
TRINITY_DN49185_c0_g1:899	si_a74	TRINITY_DN49185_c0_g1	885	908	899	-22.20	-16.24	0.731531531531531	11.5	1-11,908-898;13-20,893-886	12-12,897-894[AILt];21-21,885-885[UP3]	.((((((((....(((((((((((&)))))))))))---.)))))))).	AGAUAAUGACAUUGAACGAUUUGA&UCAAAUUGUUU---UUCAUUAUUA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN49185_c0_g1_899_TPlot.pdf
TRINITY_DN49185_c0_g1:901	si_a72	TRINITY_DN49185_c0_g1	887	910	901	-21.90	-15.94	0.727853881278539	6	1-13,910-898;15-21,893-887	14-14,897-894[AILt]	(((((((....(((((((((((((&)))))))))))))---.)))))))	AUAAUGACAUUGAACGAUUUGAAG&UUUCAAAUUGUUU---UUCAUUAU	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN49185_c0_g1_901_TPlot.pdf
TRINITY_DN4918_c4_g1:2065	si_s126	TRINITY_DN4918_c4_g1	2053	2074	2065	-29.20	-19.00	0.650684931506849	6	1-7,2074-2068;9-14,2066-2061;16-16,2059-2059;17-21,2057-2053	8-8,2067-2067[SIL];15-15,2060-2060[SIL];x-x,2058-2058[BULt]	(((((.(.((((((.(((((((&))))))).)))))).)-)))))	GAUUGCACUCGACUGUUCUGUU&AAUAGAAGAGUUGAAU-CAAUC	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s126_TRINITY_DN4918_c4_g1_2065_TPlot.pdf
TRINITY_DN49192_c0_g1:909	si_a152	TRINITY_DN49192_c0_g1	898	919	909	-29.20	-19.40	0.664383561643836	9.5	2-9,918-911;10-18,909-901	1-1,919-919[UP5];x-x,910-910[BULt];19-21,900-898[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	CACGUUGACCUUCGGAGCAACC&UGUUGUUUU-AAGGUCAAUCUA	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN49192_c0_g1_909_TPlot.pdf
TRINITY_DN4919_c0_g1:1004	si_a20	TRINITY_DN4919_c0_g1	993	1015	1004	-26.70	-18.70	0.700374531835206	11.5	1-4,1015-1012;5-9,1009-1005;12-21,1002-993	x-x,1011-1010[BULt];10-11,1004-1003[SIL]	((((((((((..(((((..((((&))))--)))))..))))))))))	UGGAGCUAGACUUAGAUAAGGGC&GCCU--AUUUAUUUUUAGUUCUA	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4919_c0_g1_1004_TPlot.pdf
TRINITY_DN4919_c0_g1:1005	si_a19	TRINITY_DN4919_c0_g1	994	1016	1005	-27.00	-19.00	0.703703703703704	11.5	1-5,1016-1012;6-10,1009-1005;13-21,1002-994	x-x,1011-1010[BULt];11-12,1004-1003[SIL]	(((((((((..(((((..(((((&)))))--)))))..)))))))))	GGAGCUAGACUUAGAUAAGGGCU&AGCCU--AUUUAUUUUUAGUUCU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN4919_c0_g1_1005_TPlot.pdf
TRINITY_DN491_c0_g1:147	si_s873	TRINITY_DN491_c0_g1	136	156	147	-30.30	-20.20	0.666666666666667	10	1-10,156-147;13-15,144-142	11-12,146-145[SIL];16-21,141-136[UP3]	......(((..((((((((((&))))))))))..)))......	CUCUUGUAGAGCUAAGACCGG&CCGGUCUUAGAACUAAAAAUA	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s873_TRINITY_DN491_c0_g1_147_TPlot.pdf
TRINITY_DN491_c0_g1:148	si_s872	TRINITY_DN491_c0_g1	137	157	148	-30.70	-21.70	0.706840390879479	8	1-11,157-147;14-16,144-142	12-13,146-145[SIL];17-21,141-137[UP3]	.....(((..(((((((((((&)))))))))))..))).....	UCUUGUAGAGCUAAGACCGGU&ACCGGUCUUAGAACUAAAAAU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN491_c0_g1_148_TPlot.pdf
TRINITY_DN491_c0_g1:149	si_s871	TRINITY_DN491_c0_g1	138	158	149	-31.00	-21.70	0.7	7	2-12,157-147;15-17,144-142	1-1,158-158[UP5];13-14,146-145[SIL];18-21,141-138[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	CUUGUAGAGCUAAGACCGGUU&UACCGGUCUUAGAACUAAAAA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN491_c0_g1_149_TPlot.pdf
TRINITY_DN491_c0_g1:150	si_s870	TRINITY_DN491_c0_g1	139	159	150	-32.70	-21.70	0.663608562691131	8	3-13,157-147;16-18,144-142	1-2,159-158[UP5];14-15,146-145[SIL];19-21,141-139[UP3]	...(((..(((((((((((..&..)))))))))))..)))...	UUGUAGAGCUAAGACCGGUUC&CUACCGGUCUUAGAACUAAAA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s870_TRINITY_DN491_c0_g1_150_TPlot.pdf
TRINITY_DN491_c0_g1:373	si_s76	TRINITY_DN491_c0_g1	362	382	373	-23.60	-15.40	0.652542372881356	13	7-15,376-368;17-21,366-362	1-6,382-377[UP5];16-16,367-367[SIL]	(((((.(((((((((......&......))))))))).)))))	GAGAAUGGGAAGAAAUAUUGG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN491_c0_g1_373_TPlot.pdf
TRINITY_DN491_c0_g1:389	si_a764	TRINITY_DN491_c0_g1	379	398	389	-28.90	-18.90	0.653979238754325	5.5	2-13,397-386;15-21,385-379	1-1,398-398[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UUGGAUC-AUUAAGAACUCAU&UUGGGUUUUUGAUUGAUUCAA	2	0.999997009183429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN491_c0_g1_389_TPlot.pdf
TRINITY_DN491_c0_g1:40	si_a473	TRINITY_DN491_c0_g1	29	49	40	-23.00	-16.20	0.704347826086956	7	1-15,49-35;17-19,33-31	16-16,34-34[SIL];20-21,30-29[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	GAGUGGAACAAUGGUUGCAUA&UAUGUAAUUAUUGUUAUAUAG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN491_c0_g1_40_TPlot.pdf
TRINITY_DN491_c0_g1:41	si_a472	TRINITY_DN491_c0_g1	30	50	41	-21.50	-16.20	0.753488372093023	7	2-16,49-35;18-20,33-31	1-1,50-50[UP5];17-17,34-34[SIL];21-21,30-30[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AGUGGAACAAUGGUUGCAUAG&AUAUGUAAUUAUUGUUAUAUA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN491_c0_g1_41_TPlot.pdf
TRINITY_DN491_c0_g1:42	si_a471	TRINITY_DN491_c0_g1	31	51	42	-21.10	-15.80	0.748815165876777	10	3-17,49-35	1-2,51-50[UP5];18-21,34-31[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUGGAACAAUGGUUGCAUAGG&AAUAUGUAAUUAUUGUUAUAU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN491_c0_g1_42_TPlot.pdf
TRINITY_DN491_c0_g1:44	si_a469	TRINITY_DN491_c0_g1	33	53	44	-21.10	-15.80	0.748815165876777	11.5	5-19,49-35	1-4,53-50[UP5];20-21,34-33[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGAACAAUGGUUGCAUAGGUG&AUAAUAUGUAAUUAUUGUUAU	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN491_c0_g1_44_TPlot.pdf
TRINITY_DN491_c0_g1:47	si_a466	TRINITY_DN491_c0_g1	36	56	47	-21.50	-14.50	0.674418604651163	15	8-21,49-36	1-7,56-50[UP5]	((((((((((((((.......&.......))))))))))))))	ACAAUGGUUGCAUAGGUGGUG&UAUAUAAUAUGUAAUUAUUGU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN491_c0_g1_47_TPlot.pdf
TRINITY_DN491_c0_g2:374	si_s76	TRINITY_DN491_c0_g2	363	383	374	-23.60	-15.80	0.669491525423729	11	3-15,381-369;18-19,366-365	1-2,383-382[UP5];16-17,368-367[SIL];20-21,364-363[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	UCGACUGGAGGGAGAAGAACG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN491_c0_g2_374_TPlot.pdf
TRINITY_DN491_c0_g2:375	si_s75	TRINITY_DN491_c0_g2	364	384	375	-24.00	-15.80	0.658333333333333	11.5	4-16,381-369;19-20,366-365	1-3,384-382[UP5];17-18,368-367[SIL];21-21,364-364[UP3]	.((..(((((((((((((...&...)))))))))))))..)).	CGACUGGAGGGAGAAGAACGC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN491_c0_g2_375_TPlot.pdf
TRINITY_DN491_c0_g2:43	si_a897	TRINITY_DN491_c0_g2	32	52	43	-21.20	-13.80	0.650943396226415	8.5	1-11,52-42;14-18,39-35	12-13,41-40[SIL];19-21,34-32[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	AAAGUAUUUAUUAUUGUUGCU&AGUAAUAAUAAGUAAUAUAAA	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN491_c0_g2_43_TPlot.pdf
TRINITY_DN491_c0_g2:44	si_a896	TRINITY_DN491_c0_g2	33	53	44	-21.60	-14.60	0.675925925925926	7	1-12,53-42;15-19,39-35	13-14,41-40[SIL];20-21,34-33[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	AAGUAUUUAUUAUUGUUGCUG&UAGUAAUAAUAAGUAAUAUAA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN491_c0_g2_44_TPlot.pdf
TRINITY_DN491_c0_g2:45	si_a895	TRINITY_DN491_c0_g2	34	54	45	-21.70	-14.60	0.672811059907834	7.5	2-13,53-42;16-20,39-35	1-1,54-54[UP5];14-15,41-40[SIL];21-21,34-34[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	AGUAUUUAUUAUUGUUGCUGC&AUAGUAAUAAUAAGUAAUAUA	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN491_c0_g2_45_TPlot.pdf
TRINITY_DN491_c1_g1:1138	si_s803	TRINITY_DN491_c1_g1	1127	1147	1138	-26.00	-17.10	0.657692307692308	12	4-13,1144-1135;15-19,1133-1129	1-3,1147-1145[UP5];14-14,1134-1134[SIL];20-21,1128-1127[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	CCAGGGUUGCGAAGGUGGUAA&AUUUUAUCUUCGUUACCUUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN491_c1_g1_1138_TPlot.pdf
TRINITY_DN491_c1_g1:712	si_a442	TRINITY_DN491_c1_g1	698	721	712	-29.30	-19.50	0.665529010238908	9	1-10,721-712;11-12,710-709;13-20,706-699	x-x,711-711[BULt];x-x,708-707[BULt];21-21,698-698[UP3]	.((((((((..((.((((((((((&))))))))))-))--)))))))).	AAACAGUUGGCUCGUCAUGUCCAA&UUGGAUAUGA-GA--UAAUUGUUG	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN491_c1_g1_712_TPlot.pdf
TRINITY_DN491_c1_g1:713	si_a441	TRINITY_DN491_c1_g1	699	722	713	-29.30	-19.10	0.651877133105802	7	2-11,721-712;12-13,710-709;14-21,706-699	1-1,722-722[UP5];x-x,711-711[BULt];x-x,708-707[BULt]	((((((((..((.((((((((((.&.))))))))))-))--))))))))	AACAGUUGGCUCGUCAUGUCCAAG&GUUGGAUAUGA-GA--UAAUUGUU	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN491_c1_g1_713_TPlot.pdf
TRINITY_DN491_c1_g1:761	si_s76	TRINITY_DN491_c1_g1	750	770	761	-23.60	-15.50	0.656779661016949	10	3-15,768-756;18-19,753-752	1-2,770-769[UP5];16-17,755-754[SIL];20-21,751-750[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	UUGACUGGAGGGAAAAGAACG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN491_c1_g1_761_TPlot.pdf
TRINITY_DN491_c1_g1:931	si_a141	TRINITY_DN491_c1_g1	919	940	931	-23.80	-16.70	0.701680672268908	8	1-10,940-931;11-19,929-921	x-x,930-930[BULt];20-21,920-919[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	GUGAACAACAAUUGGUUGAUUG&UAAUUAAUCG-UUGUUGUUUUA	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN491_c1_g1_931_TPlot.pdf
TRINITY_DN491_c3_g1:193	si_a422	TRINITY_DN491_c3_g1	191	202	193	-27.20	-17.80	0.654411764705882	3	11-21,201-191	10-10,202-202[SIL]	(((((((((((.&.)))))))))))	GCGGAUCCUGUU&UUAAAUAAAUAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a422_TRINITY_DN491_c3_g1_193_TPlot.pdf
TRINITY_DN4920_c0_g1:1638	si_a411	TRINITY_DN4920_c0_g1	1627	1647	1638	-17.90	-12.40	0.692737430167598	11.5	6-21,1642-1627	1-5,1647-1643[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUUGUUUAAAUGUGAUAUUU&UUUGUUUAUAUUUAAAUAAAU	4	0.999998571403533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN4920_c0_g1_1638_TPlot.pdf
TRINITY_DN49226_c0_g1:939	si_s876	TRINITY_DN49226_c0_g1	929	948	939	-24.20	-15.80	0.652892561983471	5.5	1-10,948-939;12-20,938-930	11-11,x-x[BULq];21-21,929-929[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	UUUUAUUUUU-GUUUUGAGAU&GUCUUAGAACUAAAAAUAAAU	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN49226_c0_g1_939_TPlot.pdf
TRINITY_DN4922_c0_g1:1701	si_s484	TRINITY_DN4922_c0_g1	1690	1710	1701	-20.50	-14.70	0.717073170731707	9.5	1-9,1710-1702;12-19,1699-1692	10-11,1701-1700[SIL];20-21,1691-1690[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AAAUAUUUGAUCAGGUAUGGG&CCUAUAUUUAUUUAAAUAUAA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN4922_c0_g1_1701_TPlot.pdf
TRINITY_DN4922_c0_g1:1702	si_s483	TRINITY_DN4922_c0_g1	1691	1711	1702	-21.40	-16.10	0.752336448598131	8.5	1-10,1711-1702;13-20,1699-1692	11-12,1701-1700[SIL];21-21,1691-1691[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAUAUUUGAUCAGGUAUGGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN4922_c0_g1_1702_TPlot.pdf
TRINITY_DN4923_c0_g1:2594	si_s490	TRINITY_DN4923_c0_g1	2583	2603	2594	-17.80	-12.80	0.719101123595506	5.5	2-5,2602-2599;7-19,2597-2585	1-1,2603-2603[UP5];6-6,2598-2598[SIL];20-21,2584-2583[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UAUUGUUUGUAUUUACAUAAU&UUUAUUUAAAUAUAAACAAAA	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN4923_c0_g1_2594_TPlot.pdf
TRINITY_DN4923_c0_g1:2595	si_s489	TRINITY_DN4923_c0_g1	2584	2604	2595	-17.90	-12.80	0.715083798882682	6.5	3-6,2602-2599;8-20,2597-2585	1-2,2604-2603[UP5];7-7,2598-2598[SIL];21-21,2584-2584[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AUUGUUUGUAUUUACAUAAUA&AUUUAUUUAAAUAUAAACAAA	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN4923_c0_g1_2595_TPlot.pdf
TRINITY_DN4923_c0_g1:2596	si_s488	TRINITY_DN4923_c0_g1	2585	2605	2596	-18.30	-12.60	0.688524590163934	7.5	4-7,2602-2599;9-21,2597-2585	1-3,2605-2603[UP5];8-8,2598-2598[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UUGUUUGUAUUUACAUAAUAA&UAUUUAUUUAAAUAUAAACAA	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN4923_c0_g1_2596_TPlot.pdf
TRINITY_DN49242_c0_g1:103	si_a21	TRINITY_DN49242_c0_g1	92	113	103	-24.30	-17.20	0.707818930041152	10.5	1-4,113-110;5-8,108-105;10-20,103-93	x-x,109-109[BULt];9-9,104-104[SIL];21-21,92-92[UP3]	.(((((((((((.((((.((((&))))-)))).))))))))))).	CUAGGACUAGGAUUAGGCUGGG&CCUA-UUUAUUUUUAGUUCUAA	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN49242_c0_g1_103_TPlot.pdf
TRINITY_DN49244_c0_g1:146	si_a677	TRINITY_DN49244_c0_g1	132	155	146	-35.40	-23.80	0.672316384180791	9.5	1-5,155-151;8-14,148-142;15-21,138-132	6-7,150-149[SIL];x-x,141-139[BULt]	(((((((...(((((((..(((((&)))))..)))))))---)))))))	CGGAACCGACGCGUGAGGCGGGAA&UUCCUUAUUCACGC---GGUUUCG	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN49244_c0_g1_146_TPlot.pdf
TRINITY_DN49244_c0_g1:503	si_a183	TRINITY_DN49244_c0_g1	492	511	503	-30.10	-21.00	0.697674418604651	6.5	1-3,511-509;5-8,508-505;10-21,503-492	4-4,x-x[BULq];9-9,504-504[SIL]	((((((((((((.((((-(((&))).)))).))))))))))))	AACAGGGAAAGGCGUUA-CUG&UAGAUAAUAUCUUUCCCUGUU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN49244_c0_g1_503_TPlot.pdf
TRINITY_DN4924_c0_g1:1047	si_s633	TRINITY_DN4924_c0_g1	1035	1056	1047	-37.90	-24.90	0.656992084432718	10	5-17,1052-1040;18-21,1038-1035	1-4,1056-1053[UP5];x-x,1039-1039[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GGGGCCGAGUGCCUACGACCUG&CUUUUCGUAGGCGUUUG-CCCU	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN4924_c0_g1_1047_TPlot.pdf
TRINITY_DN4924_c0_g1:1220	si_s93	TRINITY_DN4924_c0_g1	1210	1229	1220	-34.80	-24.80	0.71264367816092	7	1-13,1229-1217;16-18,1215-1213	14-15,1216-1216[AILq];19-21,1212-1210[UP3]	...(((.-(((((((((((((&)))))))))))))..)))...	CCGCCGU-GCGAAGAAGGGGA&UCUUCUUCUUCGCUUCGGAUU	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4924_c0_g1_1220_TPlot.pdf
TRINITY_DN4924_c0_g1:1222	si_s91	TRINITY_DN4924_c0_g1	1212	1231	1222	-34.70	-26.40	0.760806916426513	5	1-15,1231-1217;18-20,1215-1213	16-17,1216-1216[AILq];21-21,1212-1212[UP3]	.(((.-(((((((((((((((&)))))))))))))))..))).	GCCGU-GCGAAGAAGGGGAAA&UUUCUUCUUCUUCGCUUCGGA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN4924_c0_g1_1222_TPlot.pdf
TRINITY_DN4924_c0_g1:1227	si_s86	TRINITY_DN4924_c0_g1	1216	1236	1227	-32.90	-22.20	0.674772036474164	12	6-20,1231-1217	1-5,1236-1232[UP5];21-21,1216-1216[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGCGAAGAAGGGGAAACGCUA&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4924_c0_g1_1227_TPlot.pdf
TRINITY_DN4924_c0_g1:2008	si_s252	TRINITY_DN4924_c0_g1	1997	2018	2008	-31.10	-20.90	0.672025723472669	9.5	1-9,2018-2010;10-12,2008-2006;14-20,2004-1998	x-x,2009-2009[BULt];13-13,2005-2005[SIL];21-21,1997-1997[UP3]	.(((((((.(((.(((((((((&)))))))))-))).))))))).	CGAGUAGUUUGUAUGGGGGGUG&CAUUUCCCG-AUAUAUUACUCA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN4924_c0_g1_2008_TPlot.pdf
TRINITY_DN4924_c0_g1:2526	si_s158	TRINITY_DN4924_c0_g1	2515	2534	2526	-44.90	-30.60	0.681514476614699	7.5	3-9,2532-2526;11-16,2525-2520;18-20,2518-2516	1-2,2534-2533[UP5];10-10,x-x[BULq];17-17,2519-2519[SIL];21-21,2515-2515[UP3]	.(((.((((((-(((((((..&..))))))).)))))).))).	GGCCGCUGGCC-UGAACCUAU&GGAGGUUCAUGGCCAGGGGUA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN4924_c0_g1_2526_TPlot.pdf
TRINITY_DN4924_c0_g1:2753	si_s840	TRINITY_DN4924_c0_g1	2738	2762	2753	-32.20	-21.50	0.667701863354037	15	4-7,2759-2756;9-11,2754-2752;12-21,2747-2738	1-3,2762-2760[UP5];8-8,2755-2755[SIL];x-x,2751-2748[BULt]	((((((((((....(((.((((...&...)))).)))----))))))))))	UCGACUCGCUCGGCUCUAUCAACGC&AAUUUGAAAGA----AGCGAGUCGA	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s840_TRINITY_DN4924_c0_g1_2753_TPlot.pdf
TRINITY_DN4924_c0_g1:2951	si_s379	TRINITY_DN4924_c0_g1	2940	2964	2951	-42.50	-29.20	0.687058823529412	15	1-4,2964-2961;5-15,2956-2946	x-x,2960-2957[BULt];16-21,2945-2940[UP3]	......(((((((((((....((((&))))----)))))))))))......	GUUGACGGCGGACACGCCGCUGGGC&GCUC----GCGUGUCCGCCUUACAU	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN4924_c0_g1_2951_TPlot.pdf
TRINITY_DN4924_c0_g1:3105	si_s100	TRINITY_DN4924_c0_g1	3092	3115	3105	-33.70	-22.00	0.652818991097923	8.5	1-5,3115-3111;6-14,3109-3101;15-20,3098-3093	x-x,3110-3110[BULt];x-x,3100-3099[BULt];21-21,3092-3092[UP3]	.((((((..(((((((((.(((((&)))))-)))))))))--)))))).	UUUUUCCCAGAUUCGAGGACGGAG&CUUCG-CUUCGGAUU--GGAAAAU	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN4924_c0_g1_3105_TPlot.pdf
TRINITY_DN49252_c0_g1:423	si_a325	TRINITY_DN49252_c0_g1	412	432	423	-25.90	-16.90	0.652509652509653	9	1-5,432-428;8-11,425-422;14-21,419-412	6-7,427-426[SIL];12-13,421-420[SIL]	((((((((..((((..(((((&)))))..))))..))))))))	AUGAGGAAGUAGAAUUUCAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.999999982035021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN49252_c0_g1_423_TPlot.pdf
TRINITY_DN49252_c0_g1:551	si_s81	TRINITY_DN49252_c0_g1	541	560	551	-28.90	-21.20	0.73356401384083	7	1-10,560-551;14-21,548-541	11-13,550-549[AILq]	((((((((..-((((((((((&))))))))))...))))))))	AGAGGAGGUU-GGAAAGAGAA&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999997197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN49252_c0_g1_551_TPlot.pdf
TRINITY_DN49252_c0_g1:553	si_s79	TRINITY_DN49252_c0_g1	542	562	553	-26.20	-19.30	0.736641221374046	7.5	3-12,560-551;15-21,548-542	1-2,562-561[UP5];13-14,550-549[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GAGGAGGUUGGAAAGAGAAUC&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN49252_c0_g1_553_TPlot.pdf
TRINITY_DN49252_c0_g1:554	si_s78	TRINITY_DN49252_c0_g1	541	563	554	-26.20	-18.50	0.706106870229008	9.5	4-13,560-551;14-21,548-541	1-3,563-561[UP5];x-x,550-549[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	AGAGGAGGUUGGAAAGAGAAUCA&UUUUUUUCUUUCC--UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN49252_c0_g1_554_TPlot.pdf
TRINITY_DN49252_c0_g1:555	si_s77	TRINITY_DN49252_c0_g1	542	564	555	-25.50	-17.30	0.67843137254902	11.5	5-14,560-551;15-21,548-542	1-4,564-561[UP5];x-x,550-549[BULt]	(((((((..((((((((((....&....))))))))))--)))))))	GAGGAGGUUGGAAAGAGAAUCAA&UUUUUUUUCUUUCC--UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN49252_c0_g1_555_TPlot.pdf
TRINITY_DN49252_c0_g1:646	si_a780	TRINITY_DN49252_c0_g1	635	655	646	-27.30	-18.18	0.665934065934066	7	1-11,655-645;15-19,641-637	12-14,644-642[SIL];20-21,636-635[UP3]	..(((((...(((((((((((&)))))))))))...)))))..	ACGAAAACAUGAAGAGUUGGA&UUCAACUCUUCUAUUUUUCUA	3	0.999999069262624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN49252_c0_g1_646_TPlot.pdf
TRINITY_DN49252_c0_g1:647	si_a779	TRINITY_DN49252_c0_g1	636	656	647	-27.00	-18.18	0.673333333333333	6	2-12,655-645;16-20,641-637	1-1,656-656[UP5];13-15,644-642[SIL];21-21,636-636[UP3]	.(((((...(((((((((((.&.)))))))))))...))))).	CGAAAACAUGAAGAGUUGGAA&AUUCAACUCUUCUAUUUUUCU	2	0.999294147855548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN49252_c0_g1_647_TPlot.pdf
TRINITY_DN49252_c0_g1:656	si_s78	TRINITY_DN49252_c0_g1	644	666	656	-26.20	-17.10	0.652671755725191	6.5	1-8,666-659;9-13,657-653;15-20,650-645	x-x,658-658[BULt];14-14,652-651[AILt];21-21,644-644[UP3]	.((((((..(((((.((((((((&))))))))-)))))-.)))))).	UGAAGAGUUGGAAAUGAAAAAGA&UUUUUUUC-UUUCC-UUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN49252_c0_g1_656_TPlot.pdf
TRINITY_DN49252_c0_g1:657	si_s77	TRINITY_DN49252_c0_g1	645	667	657	-25.50	-16.90	0.662745098039216	6.5	2-9,666-659;10-14,657-653;16-21,650-645	1-1,667-667[UP5];x-x,658-658[BULt];15-15,652-651[AILt]	((((((..(((((.((((((((.&.))))))))-)))))-.))))))	GAAGAGUUGGAAAUGAAAAAGAU&UUUUUUUUC-UUUCC-UUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN49252_c0_g1_657_TPlot.pdf
TRINITY_DN49252_c0_g1:728	si_s72	TRINITY_DN49252_c0_g1	716	737	728	-24.10	-17.10	0.70954356846473	5.5	1-8,737-730;10-15,728-723;17-21,720-716	9-9,729-729[SIL];16-16,722-721[AILt]	(((((..((((((.((((((((&)))))))).))))))-.)))))	GAGGAUUAGAGAACAAAUAGAA&UUCUAUUUUUUUUCU-UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN49252_c0_g1_728_TPlot.pdf
TRINITY_DN49252_c0_g1:961	si_s898	TRINITY_DN49252_c0_g1	951	971	961	-30.70	-21.80	0.710097719869707	3.5	1-6,971-966;7-13,964-958;15-21,957-951	x-x,965-965[BULt];14-14,x-x[BULq]	(((((((-(((((((.((((((&))))))-))))))).)))))))	AUUGAAA-UGAAGAGAAAAGCU&GGCUUU-CUCUUCAAUUUCAAU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN49252_c0_g1_961_TPlot.pdf
TRINITY_DN49287_c0_g1:1401	si_a71	TRINITY_DN49287_c0_g1	1392	1410	1401	-23.30	-15.80	0.678111587982833	4	1-13,1410-1398;17-21,1396-1392	14-16,1397-1397[AILq]	(((((.--(((((((((((((&)))))))))))))...)))))	UAAUGC--AACAAUUUGAAGG&CUUUCAAAUUGUUUUUCAUUA	2	0.999994215439769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN49287_c0_g1_1401_TPlot.pdf
TRINITY_DN49287_c0_g1:89	si_a127	TRINITY_DN49287_c0_g1	74	98	89	-23.10	-15.60	0.675324675324675	11.5	3-13,96-86;14-21,81-74	1-2,98-97[UP5];x-x,85-82[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	UUGAUUACAGGGUGUUGCUGUGGUU&UUUUAUAGCAAUA----GUAAUUAA	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN49287_c0_g1_89_TPlot.pdf
TRINITY_DN4928_c0_g1:2341	si_a113	TRINITY_DN4928_c0_g1	2330	2350	2341	-26.20	-17.90	0.683206106870229	12	5-7,2346-2344;9-19,2342-2332	1-4,2350-2347[UP5];8-8,2343-2343[SIL];20-21,2331-2330[UP3]	..(((((((((((.(((....&....))).)))))))))))..	AUUAAAACAGGCUGGUAACAG&AAAAUACGAGCUUGUUUUAUA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN4928_c0_g1_2341_TPlot.pdf
TRINITY_DN49291_c0_g1:233	si_a97	TRINITY_DN49291_c0_g1	222	242	233	-26.00	-18.10	0.696153846153846	10	5-20,238-223	1-4,242-239[UP5];21-21,222-222[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUUUUGUUUUUGUUACCGUUU&AAAAGGUAACGAAGAUAAAAU	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN49291_c0_g1_233_TPlot.pdf
TRINITY_DN4929_c0_g1:114	si_a21	TRINITY_DN4929_c0_g1	103	125	114	-24.30	-15.90	0.654320987654321	10	2-9,124-117;10-19,114-105	1-1,125-125[UP5];x-x,116-115[BULt];20-21,104-103[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	UGAGAACUAAAAAAGUAGAUGGC&CCUAUUUAU--UUUUAGUUCUAA	4	0.999999984772108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN4929_c0_g1_114_TPlot.pdf
TRINITY_DN4929_c0_g2:1174	si_a22	TRINITY_DN4929_c0_g2	1163	1185	1174	-23.50	-16.30	0.693617021276596	10	1-8,1185-1178;9-18,1175-1166	x-x,1177-1176[BULt];19-21,1165-1163[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	AUGAGAACUAAAAAAGUAGAUGG&CUAUUUAU--UUUUAGUUCUAAG	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN4929_c0_g2_1174_TPlot.pdf
TRINITY_DN4929_c0_g2:1175	si_a21	TRINITY_DN4929_c0_g2	1164	1186	1175	-24.30	-16.70	0.687242798353909	10	2-9,1185-1178;10-19,1175-1166	1-1,1186-1186[UP5];x-x,1177-1176[BULt];20-21,1165-1164[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	UGAGAACUAAAAAAGUAGAUGGA&CCUAUUUAU--UUUUAGUUCUAA	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN4929_c0_g2_1175_TPlot.pdf
TRINITY_DN4929_c0_g2:1176	si_a20	TRINITY_DN4929_c0_g2	1165	1199	1176	-26.70	-17.80	0.666666666666667	29	1-9,1199-1191;10-20,1176-1166	x-x,1190-1177[BULt];21-21,1165-1165[UP3]	.(((((((((((..............(((((((((&)))))))))--------------))))))))))).	GAGAACUAAAAAAGUAGAUGGAGUAUUAAAUAGGC&GCCUAUUUA--------------UUUUUAGUUCUA	2	0.999882415131671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN4929_c0_g2_1176_TPlot.pdf
TRINITY_DN4929_c0_g2:1391	si_s82	TRINITY_DN4929_c0_g2	1380	1400	1391	-28.90	-19.18	0.663667820069204	10.5	3-4,1398-1397;8-20,1393-1381	1-2,1400-1399[UP5];5-7,1396-1394[SIL];21-21,1380-1380[UP3]	.(((((((((((((...((..&..))...))))))))))))).	CAGAAGAGGAAAGGCAUGAUA&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4929_c0_g2_1391_TPlot.pdf
TRINITY_DN4929_c0_g2:1392	si_s81	TRINITY_DN4929_c0_g2	1381	1401	1392	-28.90	-19.18	0.663667820069204	11.5	4-5,1398-1397;9-21,1393-1381	1-3,1401-1399[UP5];6-8,1396-1394[SIL]	(((((((((((((...((...&...))...)))))))))))))	AGAAGAGGAAAGGCAUGAUAU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4929_c0_g2_1392_TPlot.pdf
TRINITY_DN4929_c0_g2:1495	si_s83	TRINITY_DN4929_c0_g2	1484	1504	1495	-30.90	-20.90	0.676375404530744	6.5	1-10,1504-1495;13-18,1492-1487;20-21,1485-1484	11-12,1494-1493[SIL];19-19,1486-1486[SIL]	((.((((((..((((((((((&))))))))))..)))))).))	GAUGAGGAAUUAAGGGAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.99999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN4929_c0_g2_1495_TPlot.pdf
TRINITY_DN4929_c0_g2:1496	si_s82	TRINITY_DN4929_c0_g2	1482	1505	1496	-28.90	-20.40	0.705882352941176	8.5	1-11,1505-1495;12-16,1491-1487;18-21,1485-1482	x-x,1494-1492[BULt];17-17,1486-1486[SIL]	((((.(((((...(((((((((((&)))))))))))---))))).))))	AAGAUGAGGAAUUAAGGGAAGAAA&UUUCUUUCCUU---UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4929_c0_g2_1496_TPlot.pdf
TRINITY_DN4929_c0_g2:1497	si_s81	TRINITY_DN4929_c0_g2	1486	1506	1497	-28.90	-20.30	0.70242214532872	5.5	2-12,1505-1495;15-20,1492-1487	1-1,1506-1506[UP5];13-14,1494-1493[SIL];21-21,1486-1486[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	UGAGGAAUUAAGGGAAGAAAC&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN4929_c0_g2_1497_TPlot.pdf
TRINITY_DN4929_c0_g2:1498	si_s80	TRINITY_DN4929_c0_g2	1487	1507	1498	-28.20	-19.90	0.705673758865248	6.5	3-13,1505-1495;16-21,1492-1487	1-2,1507-1506[UP5];14-15,1494-1493[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GAGGAAUUAAGGGAAGAAACA&UUUUUCUUUCCUUUCUUCUUC	2	0.9999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4929_c0_g2_1498_TPlot.pdf
TRINITY_DN4929_c0_g2:1961	si_s899	TRINITY_DN4929_c0_g2	1950	1971	1961	-28.30	-20.90	0.738515901060071	8	1-5,1971-1967;6-18,1965-1953	x-x,1966-1966[BULt];19-21,1952-1950[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	AGAUGGGAUUGAAGGGUGAAGC&GCUUU-CUCUUCAAUUUCAAUU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN4929_c0_g2_1961_TPlot.pdf
TRINITY_DN4929_c0_g2:1964	si_s896	TRINITY_DN4929_c0_g2	1953	1974	1964	-31.60	-24.60	0.778481012658228	8	3-8,1972-1967;9-21,1965-1953	1-2,1974-1973[UP5];x-x,1966-1966[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UGGGAUUGAAGGGUGAAGCCGA&UAGGCUUU-CUCUUCAAUUUCA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN4929_c0_g2_1964_TPlot.pdf
TRINITY_DN4929_c0_g2:1968	si_s893	TRINITY_DN4929_c0_g2	1956	1977	1968	-29.10	-20.60	0.707903780068729	13	6-11,1972-1967;12-21,1965-1956	1-5,1977-1973[UP5];x-x,1966-1966[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GAUUGAAGGGUGAAGCCGAUAG&AAAUAGGCUUU-CUCUUCAAUU	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN4929_c0_g2_1968_TPlot.pdf
TRINITY_DN4929_c0_g2:1969	si_s892	TRINITY_DN4929_c0_g2	1957	1978	1969	-29.50	-19.30	0.654237288135593	14.5	7-12,1972-1967;13-21,1965-1957	1-6,1978-1973[UP5];x-x,1966-1966[BULt]	(((((((((.((((((......&......))))))-)))))))))	AUUGAAGGGUGAAGCCGAUAGG&UAAAUAGGCUUU-CUCUUCAAU	3	0.999999681681481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4929_c0_g2_1969_TPlot.pdf
TRINITY_DN4929_c0_g2:2021	si_a61	TRINITY_DN4929_c0_g2	2010	2030	2021	-32.90	-21.70	0.659574468085106	10	1-6,2030-2025;8-15,2023-2016	7-7,2024-2024[SIL];16-21,2015-2010[UP3]	......((((((((.((((((&)))))).))))))))......	UCUCUGGAAAGAGGGGAGUUG&CGACUCGCUUCUUUCAAAUUG	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN4929_c0_g2_2021_TPlot.pdf
TRINITY_DN4929_c0_g2:2026	si_a56	TRINITY_DN4929_c0_g2	2015	2035	2026	-38.90	-25.80	0.663239074550129	10.5	4-11,2032-2025;13-20,2023-2016	1-3,2035-2033[UP5];12-12,2024-2024[SIL];21-21,2015-2015[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	GGAAAGAGGGGAGUUGGCAAA&GGAGUCGACUCGCUUCUUUCA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN4929_c0_g2_2026_TPlot.pdf
TRINITY_DN4929_c0_g2:701	si_s48	TRINITY_DN4929_c0_g2	689	710	701	-28.80	-19.70	0.684027777777778	11	5-15,706-696;16-21,694-689	1-4,710-707[UP5];x-x,695-695[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GCUGAUGUUGAAGUCCAGCCUU&AUAAUUGGAUUUCAA-GUUAGC	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN4929_c0_g2_701_TPlot.pdf
TRINITY_DN492_c0_g1:2335	si_a331	TRINITY_DN492_c0_g1	2323	2344	2335	-30.60	-19.90	0.650326797385621	8	3-14,2342-2331;16-16,2329-2329;17-19,2327-2325	1-2,2344-2343[UP5];15-15,2330-2330[SIL];x-x,2328-2328[BULt];20-21,2324-2323[UP3]	..(((.(.((((((((((((..&..)))))))))))).)-)))..	CCCGGUGUCAAGGAAUAAAGCA&UUUUUUAUUCCUUGUC-CCGAA	4	0.999999977459052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN492_c0_g1_2335_TPlot.pdf
TRINITY_DN4931_c0_g1:1216	si_s75	TRINITY_DN4931_c0_g1	1205	1225	1216	-24.00	-16.10	0.670833333333333	18.5	10-21,1216-1205	1-9,1225-1217[UP5]	((((((((((((.........&.........))))))))))))	AGAAGGGAAGGAUGCCGUCGG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4931_c0_g1_1216_TPlot.pdf
TRINITY_DN49323_c0_g1:1538	si_a143	TRINITY_DN49323_c0_g1	1527	1549	1538	-25.10	-16.70	0.665338645418327	11	3-9,1547-1541;10-19,1538-1529	1-2,1549-1548[UP5];x-x,1540-1539[BULt];20-21,1528-1527[UP3]	..((((((((((..(((((((..&..)))))))--))))))))))..	UGUGAGACAGCAACACGAUUAUU&AUUAAUCGU--UGUUGUUUUAAG	4	0.999999334405607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN49323_c0_g1_1538_TPlot.pdf
TRINITY_DN49323_c0_g1:1588	si_a68	TRINITY_DN49323_c0_g1	1576	1597	1588	-25.40	-17.60	0.692913385826772	6	1-12,1597-1586;13-18,1584-1579	x-x,1585-1585[BULt];19-21,1578-1576[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	ACCAGAGCAUAUUUGAAAGAAG&CUUCUUUCAAAU-UGUUUUUCA	4	0.999999814907777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN49323_c0_g1_1588_TPlot.pdf
TRINITY_DN49324_c0_g1:671	si_a71	TRINITY_DN49324_c0_g1	660	680	671	-23.30	-16.50	0.708154506437768	7.5	1-10,680-671;13-18,668-663	11-12,670-669[SIL];19-21,662-660[UP3]	...((((((..((((((((((&))))))))))..))))))...	AUUUGAAGAUAAAUUUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN49324_c0_g1_671_TPlot.pdf
TRINITY_DN49324_c0_g1:672	si_a70	TRINITY_DN49324_c0_g1	661	681	672	-23.90	-16.60	0.694560669456067	6.5	2-11,680-671;14-19,668-663	1-1,681-681[UP5];12-13,670-669[SIL];20-21,662-661[UP3]	..((((((..((((((((((.&.))))))))))..))))))..	UUUGAAGAUAAAUUUGAAAGG&UCUUUCAAAUUGUUUUUCAUU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN49324_c0_g1_672_TPlot.pdf
TRINITY_DN49324_c0_g1:673	si_a69	TRINITY_DN49324_c0_g1	662	682	673	-24.00	-18.20	0.758333333333333	4.5	1-12,682-671;15-20,668-663	13-14,670-669[SIL];21-21,662-662[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	UUGAAGAUAAAUUUGAAAGGA&UUCUUUCAAAUUGUUUUUCAU	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN49324_c0_g1_673_TPlot.pdf
TRINITY_DN49324_c0_g1:674	si_a68	TRINITY_DN49324_c0_g1	663	683	674	-25.40	-20.60	0.811023622047244	3.5	1-13,683-671;16-21,668-663	14-15,670-669[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UGAAGAUAAAUUUGAAAGGAG&CUUCUUUCAAAUUGUUUUUCA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN49324_c0_g1_674_TPlot.pdf
TRINITY_DN49324_c0_g1:675	si_a67	TRINITY_DN49324_c0_g1	664	684	675	-27.20	-21.20	0.779411764705882	4	1-14,684-671;17-21,668-664	15-16,670-669[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	GAAGAUAAAUUUGAAAGGAGU&GCUUCUUUCAAAUUGUUUUUC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN49324_c0_g1_675_TPlot.pdf
TRINITY_DN49324_c0_g1:676	si_a66	TRINITY_DN49324_c0_g1	664	685	676	-26.70	-18.50	0.692883895131086	5.5	2-15,684-671;16-21,669-664	1-1,685-685[UP5];x-x,670-670[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	GAAGAUAAAUUUGAAAGGAGUA&CGCUUCUUUCAAAUU-GUUUUU	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN49324_c0_g1_676_TPlot.pdf
TRINITY_DN49324_c0_g1:784	si_s68	TRINITY_DN49324_c0_g1	773	794	784	-23.10	-15.90	0.688311688311688	10.5	1-8,794-787;13-21,781-773	9-12,786-782[AILt]	(((((((((.....((((((((&))))))))-....)))))))))	AGAGAAAAAUUCAAAGAAGUUG&CAACUUCU-AUUUUUUUUCUUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN49324_c0_g1_784_TPlot.pdf
TRINITY_DN49324_c0_g1:827	si_a72	TRINITY_DN49324_c0_g1	816	836	827	-21.90	-14.40	0.657534246575343	6	1-15,836-822	16-21,821-816[UP3]	......(((((((((((((((&)))))))))))))))......	UACGGAAAAAACAAUUUGAAA&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN49324_c0_g1_827_TPlot.pdf
TRINITY_DN49324_c0_g1:832	si_a67	TRINITY_DN49324_c0_g1	821	840	832	-27.20	-18.60	0.683823529411765	3	1-4,840-837;6-20,836-822	5-5,x-x[BULq];21-21,821-821[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	AAAAAACAAUUUGAAA-AAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999999902393794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN49324_c0_g1_832_TPlot.pdf
TRINITY_DN49324_c0_g1:833	si_a66	TRINITY_DN49324_c0_g1	822	841	833	-26.70	-19.00	0.711610486891386	3	2-5,840-837;7-21,836-822	1-1,841-841[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AAAAACAAUUUGAAA-AAGCU&CGCUUCUUUCAAAUUGUUUUU	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN49324_c0_g1_833_TPlot.pdf
TRINITY_DN49324_c0_g1:834	si_a65	TRINITY_DN49324_c0_g1	823	842	834	-27.70	-18.10	0.653429602888087	5	3-6,840-837;8-21,836-823	1-2,842-841[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	AAAACAAUUUGAAA-AAGCUU&UCGCUUCUUUCAAAUUGUUUU	3	0.999999999972391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN49324_c0_g1_834_TPlot.pdf
TRINITY_DN49330_c0_g1:1740	si_s76	TRINITY_DN49330_c0_g1	1729	1749	1740	-23.60	-15.60	0.661016949152542	18.5	10-21,1740-1729	1-9,1749-1741[UP5]	((((((((((((.........&.........))))))))))))	AAGAGAGGAGAGCUGCUCCAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN49330_c0_g1_1740_TPlot.pdf
TRINITY_DN49334_c0_g1:83	si_a12	TRINITY_DN49334_c0_g1	72	92	83	-26.80	-18.50	0.690298507462687	8	1-14,92-79	15-21,78-72[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCCUUAUAGGUUUUCUCUU&AAGAGAAAGCCUAUUUAUUUU	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN49334_c0_g1_83_TPlot.pdf
TRINITY_DN4933_c0_g1:101	si_a546	TRINITY_DN4933_c0_g1	87	110	101	-28.60	-20.32	0.71048951048951	6	1-14,110-97;17-21,91-87	15-16,96-92[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN4933_c0_g1_101_TPlot.pdf
TRINITY_DN49342_c0_g1:887	si_a21	TRINITY_DN49342_c0_g1	877	896	887	-24.30	-16.40	0.674897119341564	7	1-5,896-892;7-12,890-885;14-20,884-878	6-6,891-891[SIL];13-13,x-x[BULq];21-21,877-877[UP3]	.(((((((-((((((.(((((&))))).)))))).))))))).	CUGGGACU-AAAGUAUGUAGG&CCUAUUUAUUUUUAGUUCUAA	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN49342_c0_g1_887_TPlot.pdf
TRINITY_DN49342_c0_g1:888	si_a20	TRINITY_DN49342_c0_g1	878	897	888	-26.70	-18.20	0.681647940074906	6.5	1-6,897-892;8-13,890-885;15-21,884-878	7-7,891-891[SIL];14-14,x-x[BULq]	(((((((-((((((.((((((&)))))).)))))).)))))))	UGGGACU-AAAGUAUGUAGGU&GCCUAUUUAUUUUUAGUUCUA	2	0.998510531359226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN49342_c0_g1_888_TPlot.pdf
TRINITY_DN49353_c0_g1:317	si_s255	TRINITY_DN49353_c0_g1	305	326	317	-29.40	-19.50	0.663265306122449	10	2-11,325-316;14-17,312-309	1-1,326-326[UP5];12-13,315-313[AILt];18-21,308-305[UP3]	....((((...((((((((((.&.))))))))))-..))))....	GGAAGAGUUAUUAUAUCGGGAC&UUCCCGAUAUA-UUACUCAAAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN49353_c0_g1_317_TPlot.pdf
TRINITY_DN49353_c0_g1:318	si_a344	TRINITY_DN49353_c0_g1	307	326	318	-28.50	-20.00	0.701754385964912	6.5	1-7,326-320;10-12,318-316;14-20,314-308	8-9,319-319[AILq];13-13,315-315[SIL];21-21,307-307[UP3]	.(((((((.(((.-(((((((&)))))))..))).))))))).	AAGAGUUAUUAUA-UCGGGAC&GUCCCGAAAAUAUUAAUUCUA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN49353_c0_g1_318_TPlot.pdf
TRINITY_DN49353_c0_g1:319	si_a343	TRINITY_DN49353_c0_g1	308	327	319	-28.80	-20.70	0.71875	5.5	1-8,327-320;11-13,318-316;15-21,314-308	9-10,319-319[AILq];14-14,315-315[SIL]	(((((((.(((.-((((((((&))))))))..))).)))))))	AGAGUUAUUAUA-UCGGGACA&UGUCCCGAAAAUAUUAAUUCU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN49353_c0_g1_319_TPlot.pdf
TRINITY_DN49353_c0_g1:781	si_a503	TRINITY_DN49353_c0_g1	770	790	781	-32.10	-22.50	0.700934579439252	7	1-7,790-784;9-18,782-773	8-8,783-783[SIL];19-21,772-770[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UUCUCCAAGGAAGCUGAAAGA&UUUUUCGUCUUCCUUGGAAUG	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN49353_c0_g1_781_TPlot.pdf
TRINITY_DN49353_c0_g1:783	si_a501	TRINITY_DN49353_c0_g1	772	792	783	-33.50	-22.50	0.671641791044776	8	3-9,790-784;11-20,782-773	1-2,792-791[UP5];10-10,783-783[SIL];21-21,772-772[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	CUCCAAGGAAGCUGAAAGAAG&CGUUUUUCGUCUUCCUUGGAA	3	0.999999995464925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN49353_c0_g1_783_TPlot.pdf
TRINITY_DN49353_c0_g1:784	si_a500	TRINITY_DN49353_c0_g1	773	793	784	-34.40	-23.40	0.680232558139535	6	1-2,793-792;4-10,790-784;12-21,782-773	3-3,791-791[SIL];11-11,783-783[SIL]	((((((((((.(((((((.((&)).))))))).))))))))))	UCCAAGGAAGCUGAAAGAAGA&UCGUUUUUCGUCUUCCUUGGA	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN49353_c0_g1_784_TPlot.pdf
TRINITY_DN49353_c0_g1:788	si_s77	TRINITY_DN49353_c0_g1	775	797	788	-25.50	-17.40	0.68235294117647	4.5	1-13,797-785;14-20,782-776	x-x,784-783[BULt];21-21,775-775[UP3]	.(((((((..(((((((((((((&)))))))))))))--))))))).	CAAGGAAGCUGAAAGAAGAAAAA&UUUUUUUUCUUUC--CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN49353_c0_g1_788_TPlot.pdf
TRINITY_DN49353_c0_g1:789	si_s76	TRINITY_DN49353_c0_g1	776	798	789	-23.60	-17.40	0.73728813559322	4.5	2-14,797-785;15-21,782-776	1-1,798-798[UP5];x-x,784-783[BULt]	(((((((..(((((((((((((.&.)))))))))))))--)))))))	AAGGAAGCUGAAAGAAGAAAAAA&AUUUUUUUUCUUUC--CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN49353_c0_g1_789_TPlot.pdf
TRINITY_DN49353_c0_g1:790	si_s75	TRINITY_DN49353_c0_g1	777	799	790	-24.00	-16.60	0.691666666666667	6.5	3-15,797-785;16-21,782-777	1-2,799-798[UP5];x-x,784-783[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AGGAAGCUGAAAGAAGAAAAAAU&UAUUUUUUUUCUUUC--CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN49353_c0_g1_790_TPlot.pdf
TRINITY_DN4935_c0_g1:181	si_s518	TRINITY_DN4935_c0_g1	169	190	181	-24.60	-16.00	0.650406504065041	8	1-12,190-179;13-15,177-175;18-21,172-169	x-x,178-178[BULt];16-17,174-173[SIL]	((((..(((.((((((((((((&))))))))))))-)))..))))	AUGAAAUCGAAGUUAGGAGUGU&AUAUUCUUAAUU-CGAAAUCAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN4935_c0_g1_181_TPlot.pdf
TRINITY_DN49366_c0_g1:528	si_a547	TRINITY_DN49366_c0_g1	517	539	528	-26.90	-19.60	0.728624535315985	8	1-4,539-536;6-21,532-517	5-5,535-533[AILt]	((((((((((((((((...((((&))))--.))))))))))))))))	GGAUGGAGAAAUAGAUCCAGAAU&GUUC--AAUCUAUUUCUUUAUCU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN49366_c0_g1_528_TPlot.pdf
TRINITY_DN4936_c0_g1:1297	si_a405	TRINITY_DN4936_c0_g1	1287	1306	1297	-19.80	-13.70	0.691919191919192	4.5	2-13,1305-1294;15-19,1293-1289	1-1,1306-1306[UP5];14-14,x-x[BULq];20-21,1288-1287[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	AAGAAUA-AAACAAAACAAUA&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4936_c0_g1_1297_TPlot.pdf
TRINITY_DN4936_c0_g1:3871	si_a799	TRINITY_DN4936_c0_g1	3858	3880	3871	-32.50	-22.10	0.68	5.5	1-3,3880-3878;5-16,3876-3865;17-20,3862-3859	4-4,3877-3877[SIL];x-x,3864-3863[BULt];21-21,3858-3858[UP3]	.((((..((((((((((((.(((&))).))))))))))))--)))).	AUCGCACUUUGGAUUGGAAUAUA&UAUUUUCCAAUCCGAA--GCGAA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN4936_c0_g1_3871_TPlot.pdf
TRINITY_DN4936_c0_g1:3875	si_a795	TRINITY_DN4936_c0_g1	3864	3884	3875	-30.20	-20.30	0.672185430463576	9.5	5-7,3880-3878;9-21,3876-3864	1-4,3884-3881[UP5];8-8,3877-3877[SIL]	(((((((((((((.(((....&....))).)))))))))))))	CUUUGGAUUGGAAUAUAUCCA&UUUCUAUUUUCCAAUCCGAAG	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN4936_c0_g1_3875_TPlot.pdf
TRINITY_DN4936_c0_g1:4034	si_a463	TRINITY_DN4936_c0_g1	4023	4044	4034	-19.70	-14.40	0.730964467005076	5	1-7,4044-4038;8-21,4036-4023	x-x,4037-4037[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	AUAAUUAUGUAUUAUUGUAUGA&UUAUAUA-UAAUAUGUAAUUAU	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN4936_c0_g1_4034_TPlot.pdf
TRINITY_DN4936_c2_g1:331	si_a407	TRINITY_DN4936_c2_g1	320	340	331	-19.80	-13.10	0.661616161616162	10	1-11,340-330;13-17,328-324	12-12,329-329[SIL];18-21,323-320[UP3]	....(((((.(((((((((((&))))))))))).)))))....	GUCGAAGUGAGAGCAGAACAA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN4936_c2_g1_331_TPlot.pdf
TRINITY_DN4936_c2_g1:519	si_a412	TRINITY_DN4936_c2_g1	500	528	519	-18.30	-11.90	0.650273224043716	19	1-11,528-518;12-20,509-501	x-x,517-510[BULt];21-21,500-500[UP3]	.(((((((((........(((((((((((&)))))))))))--------))))))))).	AAUUUAUUUAAAUAUUUUGAUAUAGACAA&UUGUUUAUAUU--------UAAAUAAAUA	3	0.999999988016304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN4936_c2_g1_519_TPlot.pdf
TRINITY_DN49375_c0_g1:245	si_s7	TRINITY_DN49375_c0_g1	234	254	245	-21.70	-15.50	0.714285714285714	9	1-8,254-247;11-19,244-236	9-10,246-245[SIL];20-21,235-234[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UAAUAGUAAUAUCGGGUAGUA&UAUUACUUAUUAUUACUAUAU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN49375_c0_g1_245_TPlot.pdf
TRINITY_DN4937_c0_g1:1247	si_s71	TRINITY_DN4937_c0_g1	1235	1257	1247	-25.70	-18.20	0.708171206225681	5.5	1-5,1257-1253;6-18,1251-1239;19-20,1237-1236	x-x,1252-1252[BULt];x-x,1238-1238[BULt];21-21,1235-1235[UP3]	.((.(((((((((((((.(((((&)))))-)))))))))))))-)).	UGGCAAGGAAAAAAGAUAAGAAG&CUUCU-AUUUUUUUUCUUU-CCU	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4937_c0_g1_1247_TPlot.pdf
TRINITY_DN4937_c0_g1:1249	si_s69	TRINITY_DN4937_c0_g1	1238	1259	1249	-23.40	-16.90	0.722222222222222	5.5	2-7,1258-1253;8-20,1251-1239	1-1,1259-1259[UP5];x-x,1252-1252[BULt];21-21,1238-1238[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CAAGGAAAAAAGAUAAGAAGUC&AACUUCU-AUUUUUUUUCUUUC	4	0.999999999999455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4937_c0_g1_1249_TPlot.pdf
TRINITY_DN4937_c0_g1:1250	si_s68	TRINITY_DN4937_c0_g1	1239	1260	1250	-23.10	-16.90	0.731601731601731	6.5	3-8,1258-1253;9-21,1251-1239	1-2,1260-1259[UP5];x-x,1252-1252[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	AAGGAAAAAAGAUAAGAAGUCU&CAACUUCU-AUUUUUUUUCUUU	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4937_c0_g1_1250_TPlot.pdf
TRINITY_DN4937_c0_g1:487	si_a139	TRINITY_DN4937_c0_g1	476	496	487	-25.90	-17.20	0.664092664092664	7.5	1-4,496-493;6-9,491-488;11-19,486-478	5-5,492-492[SIL];10-10,487-487[SIL];20-21,477-476[UP3]	..(((((((((.((((.((((&)))).)))).)))))))))..	UUACAGCAACGUUUAAAUGCU&AGUAAUUAAUCGUUGUUGUUU	4	0.999888699892308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN4937_c0_g1_487_TPlot.pdf
TRINITY_DN4937_c0_g1:488	si_a138	TRINITY_DN4937_c0_g1	477	497	488	-26.30	-18.00	0.684410646387833	7	1-5,497-493;7-10,491-488;12-20,486-478	6-6,492-492[SIL];11-11,487-487[SIL];21-21,477-477[UP3]	.(((((((((.((((.(((((&))))).)))).))))))))).	UACAGCAACGUUUAAAUGCUG&UAGUAAUUAAUCGUUGUUGUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN4937_c0_g1_488_TPlot.pdf
TRINITY_DN4937_c0_g1:489	si_a137	TRINITY_DN4937_c0_g1	478	498	489	-26.50	-19.30	0.728301886792453	6.5	1-6,498-493;8-11,491-488;13-21,486-478	7-7,492-492[SIL];12-12,487-487[SIL]	(((((((((.((((.((((((&)))))).)))).)))))))))	ACAGCAACGUUUAAAUGCUGU&AUAGUAAUUAAUCGUUGUUGU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN4937_c0_g1_489_TPlot.pdf
TRINITY_DN4937_c0_g1:490	si_a136	TRINITY_DN4937_c0_g1	479	499	490	-25.70	-19.40	0.754863813229572	5.5	1-7,499-493;9-12,491-488;14-21,486-479	8-8,492-492[SIL];13-13,487-487[SIL]	((((((((.((((.(((((((&))))))).)))).))))))))	CAGCAACGUUUAAAUGCUGUU&AAUAGUAAUUAAUCGUUGUUG	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN4937_c0_g1_490_TPlot.pdf
TRINITY_DN49386_c0_g1:398	si_s683	TRINITY_DN49386_c0_g1	387	407	398	-27.00	-17.90	0.662962962962963	7	2-16,406-392	1-1,407-407[UP5];17-21,391-387[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUUUUUAAACUUAUGUUUCA&AGAAACAUGAGUUUAAUUAGU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s683_TRINITY_DN49386_c0_g1_398_TPlot.pdf
TRINITY_DN49389_c0_g1:108	si_a773	TRINITY_DN49389_c0_g1	96	117	108	-29.90	-19.80	0.662207357859532	11	2-10,116-108;13-19,104-98	1-1,117-117[UP5];11-12,107-105[AILt];20-21,97-96[UP3]	..(((((((...(((((((((.&.)))))))))-..)))))))..	CAGGAGGAGAUGGAAUCGAUCC&UGAUUGAUUC-AACUCUUCUAU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a773_TRINITY_DN49389_c0_g1_108_TPlot.pdf
TRINITY_DN4939_c0_g1:74	si_a71	TRINITY_DN4939_c0_g1	63	85	74	-23.30	-15.20	0.652360515021459	7	1-7,85-79;8-14,76-70;16-20,68-64	x-x,78-77[BULt];15-15,69-69[SIL];21-21,63-63[UP3]	.(((((.(((((((..(((((((&)))))))--))))))).))))).	GGAUGGUAAACAAUUAUUGAAAG&CUUUCAA--AUUGUUUUUCAUUA	4	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4939_c0_g1_74_TPlot.pdf
TRINITY_DN493_c0_g1:1314	si_a627	TRINITY_DN493_c0_g1	1302	1323	1314	-29.50	-22.50	0.76271186440678	6	1-10,1323-1314;11-13,1312-1310;15-19,1308-1304	x-x,1313-1313[BULt];14-14,1309-1309[SIL];20-21,1303-1302[UP3]	..(((((.(((.((((((((((&))))))))))-))).)))))..	GUAAAAUGGACAAUGAUACGCC&GGCGUAUUAU-GUCGAUUUUUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN493_c0_g1_1314_TPlot.pdf
TRINITY_DN493_c0_g1:2123	si_a77	TRINITY_DN493_c0_g1	2112	2132	2123	-22.20	-15.20	0.684684684684685	7	1-15,2132-2118	16-21,2117-2112[UP3]	......(((((((((((((((&)))))))))))))))......	AUAGUUUAAUGAAAGACAAUU&AAUUGUUUUUCAUUAUUAAGA	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN493_c0_g1_2123_TPlot.pdf
TRINITY_DN493_c0_g1:2124	si_a76	TRINITY_DN493_c0_g1	2113	2133	2124	-21.20	-15.40	0.726415094339623	7	2-16,2132-2118	1-1,2133-2133[UP5];17-21,2117-2113[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAGUUUAAUGAAAGACAAUUA&AAAUUGUUUUUCAUUAUUAAG	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN493_c0_g1_2124_TPlot.pdf
TRINITY_DN493_c0_g1:2125	si_a75	TRINITY_DN493_c0_g1	2114	2134	2125	-21.30	-15.40	0.723004694835681	8	3-17,2132-2118	1-2,2134-2133[UP5];18-21,2117-2114[UP3]	....(((((((((((((((..&..)))))))))))))))....	AGUUUAAUGAAAGACAAUUAU&CAAAUUGUUUUUCAUUAUUAA	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN493_c0_g1_2125_TPlot.pdf
TRINITY_DN49405_c0_g1:614	si_s89	TRINITY_DN49405_c0_g1	602	623	614	-35.30	-25.00	0.708215297450425	4.5	1-14,623-610;17-21,606-602	15-16,609-607[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	CGGAGAAAAAGAAGAAGAGAGG&CCUUUCUUCUUCUU-CGCUUCG	3	0.999996313032064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN49405_c0_g1_614_TPlot.pdf
TRINITY_DN49405_c0_g1:617	si_s86	TRINITY_DN49405_c0_g1	600	626	617	-32.90	-22.50	0.683890577507599	13.5	4-13,623-614;14-20,607-601	1-3,626-624[UP5];x-x,613-608[BULt];21-21,600-600[UP3]	.(((((((......((((((((((...&...))))))))))------))))))).	UGCGGAGAAAAAGAAGAAGAGAGGCUA&UUUCCUUUCUUCU------UCUUCGCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN49405_c0_g1_617_TPlot.pdf
TRINITY_DN49405_c0_g1:620	si_s83	TRINITY_DN49405_c0_g1	609	636	620	-30.90	-21.80	0.705501618122977	16	1-6,636-631;7-20,623-610	x-x,630-624[BULt];21-21,609-609[UP3]	.((((((((((((((.......((((((&))))))-------)))))))))))))).	AAAGAAGAAGAGAGGCUAAAAAAAAGAA&UUCUUU-------CCUUUCUUCUUCUUC	4	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN49405_c0_g1_620_TPlot.pdf
TRINITY_DN49405_c0_g1:631	si_s79	TRINITY_DN49405_c0_g1	613	640	631	-26.20	-17.20	0.656488549618321	19.5	4-10,637-631;11-21,623-613	1-3,640-638[UP5];x-x,630-624[BULt]	(((((((((((.......(((((((...&...)))))))-------)))))))))))	AAGAAGAGAGGCUAAAAAAAAGAAACUU&UUUUUUCUUU-------CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN49405_c0_g1_631_TPlot.pdf
TRINITY_DN4941_c0_g1:1878	si_a627	TRINITY_DN4941_c0_g1	1867	1895	1878	-29.50	-19.30	0.654237288135593	22	1-5,1895-1891;6-8,1889-1887;9-20,1879-1868	x-x,1890-1890[BULt];x-x,1886-1880[BULt];21-21,1867-1867[UP3]	.((((((((((((.......(((.(((((&)))))-)))-------)))))))))))).	CGAGGGUCGACGUCGCGAUCGAUGGCGCC&GGCGU-AUU-------AUGUCGAUUUUUU	2	0.999936101297008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN4941_c0_g1_1878_TPlot.pdf
TRINITY_DN4941_c0_g1:1907	si_a628	TRINITY_DN4941_c0_g1	1896	1917	1907	-27.10	-17.70	0.653136531365314	12	1-2,1917-1916;4-7,1914-1911;9-18,1908-1899	3-3,1915-1915[SIL];8-8,1910-1909[AILt];19-21,1898-1896[UP3]	...((((((((((..((((.((&)).))))-.))))))))))...	GACGAGAUCGACGGAAAUGGGC&GCGUAUU-AUGUCGAUUUUUUU	3	0.999999988016304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN4941_c0_g1_1907_TPlot.pdf
TRINITY_DN4941_c0_g1:1971	si_a408	TRINITY_DN4941_c0_g1	1960	1981	1971	-20.10	-13.20	0.656716417910448	12	1-8,1981-1974;9-16,1972-1965	x-x,1973-1973[BULt];17-21,1964-1960[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	UGGUGGAGUGUGACGCAAAGCA&UGUUUUGU-UUAUAUUUAAAUA	2	0.999999997835717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN4941_c0_g1_1971_TPlot.pdf
TRINITY_DN4941_c0_g1:1975	si_a405	TRINITY_DN4941_c0_g1	1963	1984	1975	-19.80	-15.80	0.797979797979798	8	1-11,1984-1974;12-19,1972-1965	x-x,1973-1973[BULt];20-21,1964-1963[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	UGGAGUGUGACGCAAAGCAAUU&AAUUGUUUUGU-UUAUAUUUAA	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN4941_c0_g1_1975_TPlot.pdf
TRINITY_DN4941_c0_g1:1976	si_a404	TRINITY_DN4941_c0_g1	1964	1985	1976	-21.70	-19.60	0.903225806451613	7	1-12,1985-1974;13-20,1972-1965	x-x,1973-1973[BULt];21-21,1964-1964[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	GGAGUGUGACGCAAAGCAAUUC&GAAUUGUUUUGU-UUAUAUUUA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN4941_c0_g1_1976_TPlot.pdf
TRINITY_DN4941_c0_g1:1979	si_a401	TRINITY_DN4941_c0_g1	1967	1988	1979	-22.60	-17.20	0.761061946902655	9	4-15,1985-1974;16-21,1972-1967	1-3,1988-1986[UP5];x-x,1973-1973[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GUGUGACGCAAAGCAAUUCAUC&AUAGAAUUGUUUUGU-UUAUAU	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN4941_c0_g1_1979_TPlot.pdf
TRINITY_DN4941_c0_g1:1980	si_a400	TRINITY_DN4941_c0_g1	1968	1989	1980	-22.80	-15.90	0.697368421052632	10.5	5-16,1985-1974;17-21,1972-1968	1-4,1989-1986[UP5];x-x,1973-1973[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	UGUGACGCAAAGCAAUUCAUCG&UAUAGAAUUGUUUUGU-UUAUA	4	0.999947062853178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN4941_c0_g1_1980_TPlot.pdf
TRINITY_DN4941_c0_g1:1981	si_a399	TRINITY_DN4941_c0_g1	1969	1990	1981	-22.60	-14.80	0.654867256637168	12.5	6-17,1985-1974;18-21,1972-1969	1-5,1990-1986[UP5];x-x,1973-1973[BULt]	((((.((((((((((((.....&.....))))))))))))-))))	GUGACGCAAAGCAAUUCAUCGU&AUAUAGAAUUGUUUUGU-UUAU	4	0.999999999989576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN4941_c0_g1_1981_TPlot.pdf
TRINITY_DN4941_c0_g1:6503	si_s292	TRINITY_DN4941_c0_g1	6492	6512	6503	-36.60	-25.80	0.704918032786885	7	1-3,6512-6510;5-10,6508-6503;12-21,6501-6492	4-4,6509-6509[SIL];11-11,6502-6502[SIL]	((((((((((.((((((.(((&))).)))))).))))))))))	UUGUAAUUCCUGUCGACCGGG&CCUAGUCGAUUGGAAUUGCGA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN4941_c0_g1_6503_TPlot.pdf
TRINITY_DN4942_c0_g1:880	si_a26	TRINITY_DN4942_c0_g1	869	889	880	-28.00	-18.80	0.671428571428571	19	10-20,880-870	1-9,889-881[UP5];21-21,869-869[UP3]	.(((((((((((.........&.........))))))))))).	GGGUCUUAGAGCAGCUCGAAA&UUAUUUUUAGUUCUAAGACCG	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN4942_c0_g1_880_TPlot.pdf
TRINITY_DN49431_c0_g1:272	si_s533	TRINITY_DN49431_c0_g1	261	281	272	-28.80	-19.10	0.663194444444445	10.5	5-19,277-263	1-4,281-278[UP5];20-21,262-261[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGGGUCGGAUUAAAAAUACAA&AAUCAUUUUUGAUCCGAUCAA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN49431_c0_g1_272_TPlot.pdf
TRINITY_DN49431_c0_g1:273	si_s532	TRINITY_DN49431_c0_g1	262	282	273	-28.70	-19.10	0.665505226480836	11.5	6-20,277-263	1-5,282-278[UP5];21-21,262-262[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGGUCGGAUUAAAAAUACAAG&AAAUCAUUUUUGAUCCGAUCA	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN49431_c0_g1_273_TPlot.pdf
TRINITY_DN4943_c0_g1:1181	si_s160	TRINITY_DN4943_c0_g1	1166	1190	1181	-40.60	-27.70	0.682266009852217	10	2-14,1189-1177;15-18,1172-1169	1-1,1190-1190[UP5];x-x,1176-1173[BULt];19-21,1168-1166[UP3]	...((((....(((((((((((((.&.)))))))))))))----))))...	AAAACCCAAAUCUGGUCAUGGACCC&AGGUUCAUGGCCAG----GGGUAAA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN4943_c0_g1_1181_TPlot.pdf
TRINITY_DN4943_c0_g1:1401	si_s812	TRINITY_DN4943_c0_g1	1390	1410	1401	-26.40	-17.20	0.651515151515151	9.5	1-11,1410-1400;13-15,1398-1396	12-12,1399-1399[SIL];16-21,1395-1390[UP3]	......(((.(((((((((((&))))))))))).)))......	AGUUUCGAGUAGAGGUAACGA&UCGUUACCUUUUCUUAAUAAU	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN4943_c0_g1_1401_TPlot.pdf
TRINITY_DN4943_c0_g1:1402	si_s811	TRINITY_DN4943_c0_g1	1391	1411	1402	-26.40	-17.40	0.659090909090909	8.5	2-12,1410-1400;14-16,1398-1396	1-1,1411-1411[UP5];13-13,1399-1399[SIL];17-21,1395-1391[UP3]	.....(((.(((((((((((.&.))))))))))).))).....	GUUUCGAGUAGAGGUAACGAU&UUCGUUACCUUUUCUUAAUAA	3	0.999999871993792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN4943_c0_g1_1402_TPlot.pdf
TRINITY_DN4943_c0_g1:389	si_a820	TRINITY_DN4943_c0_g1	377	399	389	-28.20	-18.80	0.666666666666667	6	1-9,399-391;10-12,389-387;13-20,385-378	x-x,390-390[BULt];x-x,386-386[BULt];21-21,377-377[UP3]	.((((((((.(((.(((((((((&)))))))))-)))-)))))))).	CUUUUCUUUACCUGUUUUUCUUC&GAAGAAGAA-AGG-AAAGAAAAA	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN4943_c0_g1_389_TPlot.pdf
TRINITY_DN4946_c0_g1:331	si_a759	TRINITY_DN4946_c0_g1	317	340	331	-32.60	-22.90	0.702453987730061	8.5	2-11,339-330;12-19,327-320;20-21,318-317	1-1,340-340[UP5];x-x,329-328[BULt];x-x,319-319[BULt]	((.((((((((..((((((((((.&.))))))))))--))))))))-))	UCAAAUCGAAGAGGCCCAAAGGAA&CUCCUUUGGGU--UUUUGAUU-GA	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN4946_c0_g1_331_TPlot.pdf
TRINITY_DN4946_c0_g1:333	si_a757	TRINITY_DN4946_c0_g1	320	342	333	-33.10	-22.20	0.670694864048338	8.5	4-13,339-330;14-21,327-320	1-3,342-340[UP5];x-x,329-328[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	AAUCGAAGAGGCCCAAAGGAAUU&ACCUCCUUUGGGU--UUUUGAUU	3	0.999999783320533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4946_c0_g1_333_TPlot.pdf
TRINITY_DN4947_c0_g1:1039	si_s792	TRINITY_DN4947_c0_g1	1028	1047	1039	-28.50	-19.00	0.666666666666667	6.5	2-8,1046-1040;10-19,1039-1030	1-1,1047-1047[UP5];9-9,x-x[BULq];20-21,1029-1028[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	AUGAUAAGAUAU-AGCUUGUA&AACAAGCUCGUAUUUUAUCUU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN4947_c0_g1_1039_TPlot.pdf
TRINITY_DN4947_c0_g1:1040	si_s790	TRINITY_DN4947_c0_g1	1030	1049	1040	-27.80	-18.60	0.669064748201439	8.5	4-10,1046-1040;12-21,1039-1030	1-3,1049-1047[UP5];11-11,x-x[BULq]	((((((((((-(((((((...&...))))))).))))))))))	GAUAAGAUAU-AGCUUGUAUG&AAAACAAGCUCGUAUUUUAUC	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN4947_c0_g1_1040_TPlot.pdf
TRINITY_DN4947_c0_g1:458	si_s364	TRINITY_DN4947_c0_g1	446	467	458	-38.50	-25.30	0.657142857142857	8	3-11,465-457;13-18,456-451;19-21,448-446	1-2,467-466[UP5];12-12,x-x[BULq];x-x,450-449[BULt]	(((..((((((-(((((((((..&..))))))))).))))))--)))	GCGGUGGCGGU-GGUUCAAUCAG&UAGAUUGAACCGAUCGCU--CGC	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s364_TRINITY_DN4947_c0_g1_458_TPlot.pdf
TRINITY_DN4947_c0_g1:461	si_s361	TRINITY_DN4947_c0_g1	451	470	461	-32.70	-21.80	0.666666666666667	11	6-14,465-457;16-21,456-451	1-5,470-466[UP5];15-15,x-x[BULq]	((((((-(((((((((.....&.....))))))))).))))))	GGCGGU-GGUUCAAUCAGAGA&AAAUAGAUUGAACCGAUCGCU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s361_TRINITY_DN4947_c0_g1_461_TPlot.pdf
TRINITY_DN4947_c0_g1:926	si_s516	TRINITY_DN4947_c0_g1	915	935	926	-25.80	-18.00	0.697674418604651	8.5	1-15,935-921	16-21,920-915[UP3]	......(((((((((((((((&)))))))))))))))......	AGACUAGAGUUGAGAAUAUGG&CUAUAUUCUUAAUUCGAAAUC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN4947_c0_g1_926_TPlot.pdf
TRINITY_DN4947_c0_g1:927	si_s515	TRINITY_DN4947_c0_g1	916	936	927	-24.80	-19.40	0.782258064516129	7.5	1-16,936-921	17-21,920-916[UP3]	.....((((((((((((((((&)))))))))))))))).....	GACUAGAGUUGAGAAUAUGGA&UCUAUAUUCUUAAUUCGAAAU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN4947_c0_g1_927_TPlot.pdf
TRINITY_DN4947_c0_g1:930	si_s512	TRINITY_DN4947_c0_g1	919	939	930	-24.80	-19.50	0.786290322580645	9	4-19,936-921	1-3,939-937[UP5];20-21,920-919[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAGAGUUGAGAAUAUGGACAA&AAUUCUAUAUUCUUAAUUCGA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN4947_c0_g1_930_TPlot.pdf
TRINITY_DN4947_c0_g1:931	si_s511	TRINITY_DN4947_c0_g1	920	940	931	-25.50	-19.50	0.764705882352941	10	5-20,936-921	1-4,940-937[UP5];21-21,920-920[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAGUUGAGAAUAUGGACAAA&CAAUUCUAUAUUCUUAAUUCG	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN4947_c0_g1_931_TPlot.pdf
TRINITY_DN4947_c0_g1:932	si_s510	TRINITY_DN4947_c0_g1	921	941	932	-24.80	-19.10	0.770161290322581	11	6-21,936-921	1-5,941-937[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGUUGAGAAUAUGGACAAAA&ACAAUUCUAUAUUCUUAAUUC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN4947_c0_g1_932_TPlot.pdf
TRINITY_DN49488_c0_g1:1165	si_s439	TRINITY_DN49488_c0_g1	1153	1174	1165	-21.50	-14.40	0.669767441860465	4	1-12,1174-1163;15-18,1160-1157;19-21,1155-1153	13-14,1162-1161[SIL];x-x,1156-1156[BULt]	(((.((((..((((((((((((&))))))))))))..))))-)))	UGUAUAUACUUAAUAUGUGAUU&AAUUACAUAUUAUAUAUA-ACA	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN49488_c0_g1_1165_TPlot.pdf
TRINITY_DN49488_c0_g1:1166	si_s438	TRINITY_DN49488_c0_g1	1151	1175	1166	-21.20	-14.30	0.674528301886792	10.5	1-11,1175-1165;12-20,1160-1152	x-x,1164-1161[BULt];21-21,1151-1151[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AUUGUAUAUACUUAAUAUGUGAUUA&UAAUUACAUAU----UAUAUAUAAC	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN49488_c0_g1_1166_TPlot.pdf
TRINITY_DN4948_c0_g1:2552	si_s77	TRINITY_DN4948_c0_g1	2541	2561	2552	-25.50	-17.40	0.68235294117647	7	4-14,2558-2548;16-20,2546-2542	1-3,2561-2559[UP5];15-15,2547-2547[SIL];21-21,2541-2541[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	CAAGAAUGGAAAGAAAAAUGU&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4948_c0_g1_2552_TPlot.pdf
TRINITY_DN4948_c0_g1:2553	si_s76	TRINITY_DN4948_c0_g1	2542	2562	2553	-23.60	-17.40	0.73728813559322	8	5-15,2558-2548;17-21,2546-2542	1-4,2562-2559[UP5];16-16,2547-2547[SIL]	(((((.(((((((((((....&....))))))))))).)))))	AAGAAUGGAAAGAAAAAUGUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4948_c0_g1_2553_TPlot.pdf
TRINITY_DN4948_c0_g1:2554	si_s75	TRINITY_DN4948_c0_g1	2543	2563	2554	-24.00	-16.60	0.691666666666667	10	6-16,2558-2548;18-21,2546-2543	1-5,2563-2559[UP5];17-17,2547-2547[SIL]	((((.(((((((((((.....&.....))))))))))).))))	AGAAUGGAAAGAAAAAUGUGA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4948_c0_g1_2554_TPlot.pdf
TRINITY_DN49500_c0_g1:20	si_a346	TRINITY_DN49500_c0_g1	9	28	20	-25.90	-17.70	0.683397683397683	11	1-5,28-24;8-9,21-20;12-21,18-9	6-7,23-22[SIL];10-11,19-19[AILq]	((((((((((.-((..(((((&)))))..))..))))))))))	GAUGGAAUUGG-GUGCUCGGG&CCCGAAAAUAUUAAUUCUAUU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN49500_c0_g1_20_TPlot.pdf
TRINITY_DN49505_c0_g1:344	si_s68	TRINITY_DN49505_c0_g1	333	353	344	-23.10	-15.20	0.658008658008658	11	4-11,350-343;14-21,340-333	1-3,353-351[UP5];12-13,342-341[SIL]	((((((((..((((((((...&...))))))))..))))))))	AGAGAAGAUCAGUGGAAGACA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN49505_c0_g1_344_TPlot.pdf
TRINITY_DN49509_c0_g1:572	si_s79	TRINITY_DN49509_c0_g1	560	581	572	-26.20	-19.80	0.755725190839695	9	4-17,578-565;19-21,562-560	1-3,581-579[UP5];18-18,564-563[AILt]	(((..((((((((((((((...&...))))))))))))))-.)))	GAGUUAGAGAGGAGAGAAAUUG&UUUUUUCUUUCCUUUCU-UCUU	3	0.99999999998526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN49509_c0_g1_572_TPlot.pdf
TRINITY_DN49509_c0_g1:804	si_s69	TRINITY_DN49509_c0_g1	793	812	804	-23.40	-18.80	0.803418803418803	4.5	2-7,811-806;9-21,805-793	1-1,812-812[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GGAAGAGAGAAAA-AGAAGUG&AACUUCUAUUUUUUUUCUUUC	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN49509_c0_g1_804_TPlot.pdf
TRINITY_DN49509_c0_g1:805	si_s68	TRINITY_DN49509_c0_g1	794	813	805	-23.10	-16.70	0.722943722943723	6.5	3-8,811-806;10-21,805-794	1-2,813-812[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	GAAGAGAGAAAA-AGAAGUGU&CAACUUCUAUUUUUUUUCUUU	4	0.999999696230004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN49509_c0_g1_805_TPlot.pdf
TRINITY_DN4951_c0_g1:4944	si_s713	TRINITY_DN4951_c0_g1	4933	4953	4944	-32.00	-21.80	0.68125	9	2-10,4952-4944;12-16,4942-4938	1-1,4953-4953[UP5];11-11,4943-4943[SIL];17-21,4937-4933[UP3]	.....(((((.(((((((((.&.))))))))).))))).....	ACAGUUCUUUGCCUGUUCGCC&AGUGAACAGGGAAAGAUAUUA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s713_TRINITY_DN4951_c0_g1_4944_TPlot.pdf
TRINITY_DN4951_c0_g1:4945	si_s712	TRINITY_DN4951_c0_g1	4934	4954	4945	-32.00	-21.80	0.68125	10	3-11,4952-4944;13-17,4942-4938	1-2,4954-4953[UP5];12-12,4943-4943[SIL];18-21,4937-4934[UP3]	....(((((.(((((((((..&..))))))))).)))))....	CAGUUCUUUGCCUGUUCGCCU&UAGUGAACAGGGAAAGAUAUU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s712_TRINITY_DN4951_c0_g1_4945_TPlot.pdf
TRINITY_DN4951_c0_g1:4949	si_s708	TRINITY_DN4951_c0_g1	4938	4958	4949	-31.90	-21.70	0.68025078369906	13	7-15,4952-4944;17-21,4942-4938	1-6,4958-4953[UP5];16-16,4943-4943[SIL]	(((((.(((((((((......&......))))))))).)))))	UCUUUGCCUGUUCGCCUGAAU&UUAUUAGUGAACAGGGAAAGA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s708_TRINITY_DN4951_c0_g1_4949_TPlot.pdf
TRINITY_DN4951_c0_g1:5471	si_s375	TRINITY_DN4951_c0_g1	5458	5481	5471	-44.10	-28.70	0.650793650793651	9	1-3,5481-5479;4-7,5477-5474;9-10,5472-5471;11-21,5468-5458	x-x,5478-5478[BULt];8-8,5473-5473[SIL];x-x,5470-5469[BULt]	(((((((((((..((.((((.(((&)))-)))).))--)))))))))))	AGGGCGGACACAAGCUAGCGUAUU&GAU-CGCUCGC--GUGUCCGCCUU	4	0.9999970577487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN4951_c0_g1_5471_TPlot.pdf
TRINITY_DN4951_c0_g1:5544	si_a59	TRINITY_DN4951_c0_g1	5529	5554	5544	-34.00	-22.20	0.652941176470588	10.5	1-3,5554-5552;5-8,5550-5547;9-15,5545-5539;16-21,5534-5529	4-4,5551-5551[SIL];x-x,5546-5546[BULt];x-x,5538-5535[BULt]	((((((....(((((((.((((.(((&))).))))-)))))))----))))))	GUUUGGAAGCGAGAAGCAGAGUGGGC&GUCGACUC-GCUUCUU----UCAAAU	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN4951_c0_g1_5544_TPlot.pdf
TRINITY_DN4951_c0_g1:5933	si_s88	TRINITY_DN4951_c0_g1	5920	5942	5933	-34.80	-26.70	0.767241379310345	6.5	3-16,5940-5927;17-21,5924-5920	1-2,5942-5941[UP5];x-x,5926-5925[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	GAAGCGGGAGGAAGAAGAGAGAC&UCCUUUCUUCUUCUUC--GCUUC	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4951_c0_g1_5933_TPlot.pdf
TRINITY_DN4952_c0_g1:437	si_s71	TRINITY_DN4952_c0_g1	426	452	437	-25.70	-16.92	0.658365758754864	21	1-8,452-445;12-21,435-426	9-11,444-436[AILt]	((((((((((.........((((((((&))))))))------...))))))))))	AGGAGAGGAACUGGGUUAUAGUGGAAG&CUUCUAUU------UUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4952_c0_g1_437_TPlot.pdf
TRINITY_DN49550_c0_g1:1322	si_s318	TRINITY_DN49550_c0_g1	1311	1331	1322	-32.80	-22.60	0.689024390243902	8.5	3-17,1329-1315	1-2,1331-1330[UP5];18-21,1314-1311[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCCGUGUGACAAGAAGGAUUC&CUGUCCUUCUUGUUACAAACA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN49550_c0_g1_1322_TPlot.pdf
TRINITY_DN49550_c0_g1:1323	si_s317	TRINITY_DN49550_c0_g1	1312	1332	1323	-33.10	-22.60	0.682779456193353	9.5	4-18,1329-1315	1-3,1332-1330[UP5];19-21,1314-1312[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCGUGUGACAAGAAGGAUUCU&UCUGUCCUUCUUGUUACAAAC	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN49550_c0_g1_1323_TPlot.pdf
TRINITY_DN49557_c0_g1:722	si_s77	TRINITY_DN49557_c0_g1	711	731	722	-25.50	-17.30	0.67843137254902	6.5	3-14,729-718;16-20,716-712	1-2,731-730[UP5];15-15,717-717[SIL];21-21,711-711[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AAAGAGUGGAAAGAAAAAGUA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN49557_c0_g1_722_TPlot.pdf
TRINITY_DN4955_c0_g1:390	si_s483	TRINITY_DN4955_c0_g1	379	399	390	-21.40	-15.00	0.700934579439252	10	1-14,399-386	15-21,385-379[UP3]	.......((((((((((((((&)))))))))))))).......	AACAGUCAAGUAGAUGUAGGA&UCCUAUAUUUAUUUAAAUAUA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN4955_c0_g1_390_TPlot.pdf
TRINITY_DN4955_c0_g1:391	si_s482	TRINITY_DN4955_c0_g1	380	400	391	-21.20	-16.00	0.754716981132076	8.5	1-15,400-386	16-21,385-380[UP3]	......(((((((((((((((&)))))))))))))))......	ACAGUCAAGUAGAUGUAGGAU&AUCCUAUAUUUAUUUAAAUAU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN4955_c0_g1_391_TPlot.pdf
TRINITY_DN4955_c0_g1:392	si_s481	TRINITY_DN4955_c0_g1	381	401	392	-23.00	-19.80	0.860869565217391	7.5	1-16,401-386	17-21,385-381[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAGUCAAGUAGAUGUAGGAUC&GAUCCUAUAUUUAUUUAAAUA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN4955_c0_g1_392_TPlot.pdf
TRINITY_DN4955_c0_g1:394	si_s479	TRINITY_DN4955_c0_g1	383	403	394	-26.40	-19.80	0.75	8	3-18,401-386	1-2,403-402[UP5];19-21,385-383[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUCAAGUAGAUGUAGGAUCAC&CGGAUCCUAUAUUUAUUUAAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN4955_c0_g1_394_TPlot.pdf
TRINITY_DN4955_c0_g1:396	si_s477	TRINITY_DN4955_c0_g1	385	405	396	-27.10	-19.80	0.730627306273063	10	5-20,401-386	1-4,405-402[UP5];21-21,385-385[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAAGUAGAUGUAGGAUCACAG&AACGGAUCCUAUAUUUAUUUA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN4955_c0_g1_396_TPlot.pdf
TRINITY_DN49560_c0_g1:1378	si_a502	TRINITY_DN49560_c0_g1	1366	1386	1378	-32.10	-22.90	0.713395638629283	7	1-8,1386-1379;10-12,1378-1376;13-21,1374-1366	9-9,x-x[BULq];x-x,1375-1375[BULt]	(((((((((.(((-((((((((&)))))))).)))-)))))))))	GUUCCAAGGUGAG-CGAGAAAU&GUUUUUCGUCUU-CCUUGGAAU	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN49560_c0_g1_1378_TPlot.pdf
TRINITY_DN49560_c0_g1:1381	si_a498	TRINITY_DN49560_c0_g1	1370	1390	1381	-33.50	-22.50	0.671641791044776	6.5	2-12,1389-1379;14-16,1378-1376;17-21,1374-1370	1-1,1390-1390[UP5];13-13,x-x[BULq];x-x,1375-1375[BULt]	(((((.(((-(((((((((((.&.))))))))))).)))-)))))	CAAGGUGAG-CGAGAAAUGGCG&UGUCGUUUUUCGUCUU-CCUUG	4	0.999999999899033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN49560_c0_g1_1381_TPlot.pdf
TRINITY_DN49560_c0_g1:463	si_s810	TRINITY_DN49560_c0_g1	452	473	463	-27.90	-19.00	0.681003584229391	8.5	1-3,473-471;4-15,469-458	x-x,470-470[BULt];16-21,457-452[UP3]	......((((((((((((.(((&)))-))))))))))))......	CUAGGCGAGAAGGUAACGCAAG&CUU-CGUUACCUUUUCUUAAUA	4	0.99999660035318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN49560_c0_g1_463_TPlot.pdf
TRINITY_DN49560_c0_g1:464	si_s809	TRINITY_DN49560_c0_g1	453	474	464	-28.50	-19.00	0.666666666666667	8.5	2-4,473-471;5-16,469-458	1-1,474-474[UP5];x-x,470-470[BULt];17-21,457-453[UP3]	.....((((((((((((.(((.&.)))-)))))))))))).....	UAGGCGAGAAGGUAACGCAAGC&UCUU-CGUUACCUUUUCUUAAU	3	0.999999997721425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN49560_c0_g1_464_TPlot.pdf
TRINITY_DN49587_c0_g1:60	si_a861	TRINITY_DN49587_c0_g1	49	72	60	-22.30	-14.50	0.650224215246637	10	2-9,71-64;10-21,60-49	1-1,72-72[UP5];x-x,63-61[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	GGAUUUUUGGUAUGCAUUGGAUUC&AAAUCCAAU---UAUUAAAGAUUU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN49587_c0_g1_60_TPlot.pdf
TRINITY_DN4958_c0_g1:2378	si_a862	TRINITY_DN4958_c0_g1	2367	2388	2378	-22.70	-15.40	0.6784140969163	9.5	3-9,2386-2380;10-20,2378-2368	1-2,2388-2387[UP5];x-x,2379-2379[BULt];21-21,2367-2367[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	AGAGUUUUUGAUAGAUUGGAAA&AAUCCAAUU-AUUAAAGAUUUA	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN4958_c0_g1_2378_TPlot.pdf
TRINITY_DN49599_c0_g1:480	si_s75	TRINITY_DN49599_c0_g1	468	489	480	-24.00	-18.50	0.770833333333333	7	3-18,487-472;19-21,470-468	1-2,489-488[UP5];x-x,471-471[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	GGAUAAGGAGGGAAGAAAAAGA&UAUUUUUUUUCUUUCCUU-UCU	3	0.999999935685347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN49599_c0_g1_480_TPlot.pdf
TRINITY_DN49599_c0_g1:483	si_s72	TRINITY_DN49599_c0_g1	472	492	483	-24.10	-19.90	0.825726141078838	4.5	1-4,492-489;6-21,487-472	5-5,488-488[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	AAGGAGGGAAGAAAAAGAGAG&UUCUAUUUUUUUUCUUUCCUU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN49599_c0_g1_483_TPlot.pdf
TRINITY_DN49599_c0_g1:488	si_s70	TRINITY_DN49599_c0_g1	477	498	488	-25.80	-18.50	0.717054263565891	9.5	2-5,497-494;8-21,490-477	1-1,498-498[UP5];6-7,493-491[AILt]	((((((((((((((...((((.&.))))-..))))))))))))))	GGGAAGAAAAAGAGAGUGAAGG&ACUUC-UAUUUUUUUUCUUUCC	3	0.999999995180967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN49599_c0_g1_488_TPlot.pdf
TRINITY_DN49599_c0_g1:492	si_s81	TRINITY_DN49599_c0_g1	478	502	492	-28.90	-19.80	0.685121107266436	9.5	2-9,501-494;10-15,492-487;16-21,483-478	1-1,502-502[UP5];x-x,493-493[BULt];x-x,486-484[BULt]	((((((...((((((.((((((((.&.))))))))-))))))---))))))	GGAAGAAAAAGAGAGUGAAGGAAGU&UUUUCUUUC-CUUUCU---UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN49599_c0_g1_492_TPlot.pdf
TRINITY_DN49599_c0_g1:494	si_s80	TRINITY_DN49599_c0_g1	479	503	494	-28.20	-18.50	0.656028368794326	10.5	3-10,501-494;11-16,492-487;17-21,483-479	1-2,503-502[UP5];x-x,493-493[BULt];x-x,486-484[BULt]	(((((...((((((.((((((((..&..))))))))-))))))---)))))	GAAGAAAAAGAGAGUGAAGGAAGUU&UUUUUCUUUC-CUUUCU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN49599_c0_g1_494_TPlot.pdf
TRINITY_DN4959_c0_g1:2122	si_a448	TRINITY_DN4959_c0_g1	2112	2131	2122	-25.50	-17.10	0.670588235294118	7.5	2-11,2130-2121;13-19,2120-2114	1-1,2131-2131[UP5];12-12,x-x[BULq];20-21,2113-2112[UP3]	..(((((((-((((((((((.&.)))))))))).)))))))..	GAGUGACAG-AGUUAUCUCAA&AUGAGAUAAUUGUUGUUAUAU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN4959_c0_g1_2122_TPlot.pdf
TRINITY_DN4959_c0_g1:2123	si_a447	TRINITY_DN4959_c0_g1	2113	2132	2123	-25.70	-17.10	0.665369649805448	7.5	3-12,2130-2121;14-20,2120-2114	1-2,2132-2131[UP5];13-13,x-x[BULq];21-21,2113-2113[UP3]	.(((((((-((((((((((..&..)))))))))).))))))).	AGUGACAG-AGUUAUCUCAAU&UAUGAGAUAAUUGUUGUUAUA	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN4959_c0_g1_2123_TPlot.pdf
TRINITY_DN4959_c0_g1:2229	si_s76	TRINITY_DN4959_c0_g1	2218	2238	2229	-23.60	-16.50	0.699152542372881	8.5	3-17,2236-2222;19-19,2220-2220	1-2,2238-2237[UP5];18-18,2221-2221[SIL];20-21,2219-2218[UP3]	..(.(((((((((((((((..&..))))))))))))))).)..	UUGUGGGGGAAGAAAAGAAGA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4959_c0_g1_2229_TPlot.pdf
TRINITY_DN4959_c0_g1:2233	si_s72	TRINITY_DN4959_c0_g1	2222	2242	2233	-24.10	-19.00	0.788381742738589	7.5	2-4,2241-2239;6-21,2237-2222	1-1,2242-2242[UP5];5-5,2238-2238[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GGGGGAAGAAAAGAAGAGGAU&UUCUAUUUUUUUUCUUUCCUU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4959_c0_g1_2233_TPlot.pdf
TRINITY_DN4959_c0_g1:2234	si_s71	TRINITY_DN4959_c0_g1	2223	2243	2234	-25.70	-18.70	0.727626459143969	9	3-5,2241-2239;7-21,2237-2223	1-2,2243-2242[UP5];6-6,2238-2238[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GGGGAAGAAAAGAAGAGGAUC&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999120068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN4959_c0_g1_2234_TPlot.pdf
TRINITY_DN4959_c0_g1:2235	si_s70	TRINITY_DN4959_c0_g1	2224	2244	2235	-25.80	-17.40	0.674418604651163	10.5	4-6,2241-2239;8-21,2237-2224	1-3,2244-2242[UP5];7-7,2238-2238[SIL]	((((((((((((((.(((...&...))).))))))))))))))	GGGAAGAAAAGAAGAGGAUCC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4959_c0_g1_2235_TPlot.pdf
TRINITY_DN4959_c0_g1:2469	si_a53	TRINITY_DN4959_c0_g1	2457	2480	2469	-39.00	-25.50	0.653846153846154	11	1-8,2480-2473;9-10,2470-2469;11-16,2467-2462;18-20,2460-2458	x-x,2472-2471[BULt];x-x,2468-2468[BULt];17-17,2461-2461[SIL];21-21,2457-2457[UP3]	.(((.((((((.((..((((((((&))))))))--))-)))))).))).	UGGGUGCGAGUACGUUGCUCCUGG&CUAGGAGU--CG-ACUCGCUUCUU	2	0.951413723591217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a53_TRINITY_DN4959_c0_g1_2469_TPlot.pdf
TRINITY_DN4959_c0_g1:2473	si_a51	TRINITY_DN4959_c0_g1	2459	2482	2473	-41.10	-28.40	0.690997566909976	10.5	1-10,2482-2473;11-12,2470-2469;13-18,2467-2462;20-21,2460-2459	x-x,2472-2471[BULt];x-x,2468-2468[BULt];19-19,2461-2461[SIL]	((.((((((.((..((((((((((&))))))))))--))-)))))).))	GGUGCGAGUACGUUGCUCCUGGGC&GUCUAGGAGU--CG-ACUCGCUUC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN4959_c0_g1_2473_TPlot.pdf
TRINITY_DN4959_c0_g1:2474	si_a50	TRINITY_DN4959_c0_g1	2460	2483	2474	-41.50	-28.40	0.68433734939759	11	2-11,2482-2473;12-13,2470-2469;14-19,2467-2462	1-1,2483-2483[UP5];x-x,2472-2471[BULt];x-x,2468-2468[BULt];20-21,2461-2460[UP3]	..((((((.((..((((((((((.&.))))))))))--))-))))))..	GUGCGAGUACGUUGCUCCUGGGCG&GGUCUAGGAGU--CG-ACUCGCUU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN4959_c0_g1_2474_TPlot.pdf
TRINITY_DN4959_c0_g1:2475	si_a49	TRINITY_DN4959_c0_g1	2461	2484	2475	-42.20	-28.40	0.672985781990521	12	3-12,2482-2473;13-14,2470-2469;15-20,2467-2462	1-2,2484-2483[UP5];x-x,2472-2471[BULt];x-x,2468-2468[BULt];21-21,2461-2461[UP3]	.((((((.((..((((((((((..&..))))))))))--))-)))))).	UGCGAGUACGUUGCUCCUGGGCGC&AGGUCUAGGAGU--CG-ACUCGCU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a49_TRINITY_DN4959_c0_g1_2475_TPlot.pdf
TRINITY_DN4959_c0_g1:2476	si_a48	TRINITY_DN4959_c0_g1	2462	2485	2476	-41.90	-28.00	0.668257756563246	10.5	4-13,2482-2473;14-15,2470-2469;16-21,2467-2462	1-3,2485-2483[UP5];x-x,2472-2471[BULt];x-x,2468-2468[BULt]	((((((.((..((((((((((...&...))))))))))--))-))))))	GCGAGUACGUUGCUCCUGGGCGCA&UAGGUCUAGGAGU--CG-ACUCGC	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a48_TRINITY_DN4959_c0_g1_2476_TPlot.pdf
TRINITY_DN4959_c0_g1:2487	si_s297	TRINITY_DN4959_c0_g1	2476	2497	2487	-29.80	-20.10	0.674496644295302	9.5	1-9,2497-2489;10-15,2487-2482	x-x,2488-2488[BULt];16-21,2481-2476[UP3]	......((((((.(((((((((&)))))))))-))))))......	CCUGGGCGCAAUCUCCGAUCGG&UCGAUUGGA-AUUGCGAAAAUU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN4959_c0_g1_2487_TPlot.pdf
TRINITY_DN4959_c0_g1:2490	si_s295	TRINITY_DN4959_c0_g1	2478	2499	2490	-32.20	-21.00	0.652173913043478	10	1-1,2499-2499;3-11,2497-2489;12-17,2487-2482	2-2,2498-2498[SIL];x-x,2488-2488[BULt];18-21,2481-2478[UP3]	....((((((.(((((((((.(&).)))))))))-))))))....	UGGGCGCAAUCUCCGAUCGGGU&AGUCGAUUGGA-AUUGCGAAAA	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN4959_c0_g1_2490_TPlot.pdf
TRINITY_DN4959_c0_g1:2491	si_s294	TRINITY_DN4959_c0_g1	2479	2500	2491	-32.60	-22.10	0.677914110429448	9	1-2,2500-2499;4-12,2497-2489;13-18,2487-2482	3-3,2498-2498[SIL];x-x,2488-2488[BULt];19-21,2481-2479[UP3]	...((((((.(((((((((.((&)).)))))))))-))))))...	GGGCGCAAUCUCCGAUCGGGUA&UAGUCGAUUGGA-AUUGCGAAA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN4959_c0_g1_2491_TPlot.pdf
TRINITY_DN4959_c0_g1:2492	si_s293	TRINITY_DN4959_c0_g1	2480	2501	2492	-34.30	-22.30	0.650145772594752	8	2-3,2500-2499;5-13,2497-2489;14-19,2487-2482	1-1,2501-2501[UP5];4-4,2498-2498[SIL];x-x,2488-2488[BULt];20-21,2481-2480[UP3]	..((((((.(((((((((.((.&.)).)))))))))-))))))..	GGCGCAAUCUCCGAUCGGGUAU&CUAGUCGAUUGGA-AUUGCGAA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN4959_c0_g1_2492_TPlot.pdf
TRINITY_DN4959_c0_g1:2493	si_s292	TRINITY_DN4959_c0_g1	2481	2503	2493	-36.60	-24.10	0.658469945355191	8	1-2,2503-2502;3-4,2500-2499;6-14,2497-2489;15-20,2487-2482	x-x,2501-2501[BULt];5-5,2498-2498[SIL];x-x,2488-2488[BULt];21-21,2481-2481[UP3]	.((((((.(((((((((.((.((&))-)).)))))))))-)))))).	GCGCAAUCUCCGAUCGGGUAUGG&CC-UAGUCGAUUGGA-AUUGCGA	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN4959_c0_g1_2493_TPlot.pdf
TRINITY_DN4959_c0_g1:2494	si_s291	TRINITY_DN4959_c0_g1	2482	2504	2494	-38.10	-27.60	0.724409448818898	7	1-3,2504-2502;4-5,2500-2499;7-15,2497-2489;16-21,2487-2482	x-x,2501-2501[BULt];6-6,2498-2498[SIL];x-x,2488-2488[BULt]	((((((.(((((((((.((.(((&)))-)).)))))))))-))))))	CGCAAUCUCCGAUCGGGUAUGGC&GCC-UAGUCGAUUGGA-AUUGCG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN4959_c0_g1_2494_TPlot.pdf
TRINITY_DN4959_c0_g1:2495	si_s290	TRINITY_DN4959_c0_g1	2483	2505	2495	-38.10	-25.50	0.669291338582677	7.5	2-4,2504-2502;5-6,2500-2499;8-16,2497-2489;17-21,2487-2483	1-1,2505-2505[UP5];x-x,2501-2501[BULt];7-7,2498-2498[SIL];x-x,2488-2488[BULt]	(((((.(((((((((.((.(((.&.)))-)).)))))))))-)))))	GCAAUCUCCGAUCGGGUAUGGCC&CGCC-UAGUCGAUUGGA-AUUGC	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN4959_c0_g1_2495_TPlot.pdf
TRINITY_DN4959_c0_g1:2591	si_a660	TRINITY_DN4959_c0_g1	2580	2600	2591	-36.60	-24.38	0.666120218579235	6.5	1-12,2600-2589;16-19,2585-2582	13-15,2588-2586[SIL];20-21,2581-2580[UP3]	..((((...((((((((((((&))))))))))))...))))..	CAAGUCCAGAGGCGUUUCCCG&CGGGAAAUGCCUAUUGAUUCC	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN4959_c0_g1_2591_TPlot.pdf
TRINITY_DN4959_c0_g1:2592	si_a659	TRINITY_DN4959_c0_g1	2581	2601	2592	-35.20	-25.98	0.738068181818182	5.5	1-13,2601-2589;17-20,2585-2582	14-16,2588-2586[SIL];21-21,2581-2581[UP3]	.((((...(((((((((((((&)))))))))))))...)))).	AAGUCCAGAGGCGUUUCCCGA&UCGGGAAAUGCCUAUUGAUUC	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN4959_c0_g1_2592_TPlot.pdf
TRINITY_DN4959_c0_g1:2593	si_a658	TRINITY_DN4959_c0_g1	2582	2602	2593	-33.40	-25.98	0.777844311377246	5.5	2-14,2601-2589;18-21,2585-2582	1-1,2602-2602[UP5];15-17,2588-2586[SIL]	((((...(((((((((((((.&.)))))))))))))...))))	AGUCCAGAGGCGUUUCCCGAG&AUCGGGAAAUGCCUAUUGAUU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN4959_c0_g1_2593_TPlot.pdf
TRINITY_DN4959_c0_g1:2594	si_a657	TRINITY_DN4959_c0_g1	2583	2603	2594	-33.80	-25.18	0.744970414201183	7.5	3-15,2601-2589;19-21,2585-2583	1-2,2603-2602[UP5];16-18,2588-2586[SIL]	(((...(((((((((((((..&..)))))))))))))...)))	GUCCAGAGGCGUUUCCCGAGA&UAUCGGGAAAUGCCUAUUGAU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN4959_c0_g1_2594_TPlot.pdf
TRINITY_DN4959_c0_g1:2595	si_a656	TRINITY_DN4959_c0_g1	2585	2604	2595	-33.80	-25.10	0.742603550295858	8.5	4-16,2601-2589;18-20,2588-2586	1-3,2604-2602[UP5];17-17,x-x[BULq];21-21,2585-2585[UP3]	.(((-(((((((((((((...&...))))))))))))).))).	CCAG-AGGCGUUUCCCGAGAG&AUAUCGGGAAAUGCCUAUUGA	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN4959_c0_g1_2595_TPlot.pdf
TRINITY_DN4959_c0_g1:2596	si_a655	TRINITY_DN4959_c0_g1	2586	2605	2596	-33.20	-24.30	0.731927710843373	9	5-17,2601-2589;19-21,2588-2586	1-4,2605-2602[UP5];18-18,x-x[BULq]	(((-(((((((((((((....&....))))))))))))).)))	CAG-AGGCGUUUCCCGAGAGU&UAUAUCGGGAAAUGCCUAUUG	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a655_TRINITY_DN4959_c0_g1_2596_TPlot.pdf
TRINITY_DN4959_c0_g1:2597	si_a654	TRINITY_DN4959_c0_g1	2586	2606	2597	-31.70	-24.00	0.757097791798107	12.5	6-18,2601-2589	1-5,2606-2602[UP5];19-21,2588-2586[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAGAGGCGUUUCCCGAGAGUC&AUAUAUCGGGAAAUGCCUAUU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a654_TRINITY_DN4959_c0_g1_2597_TPlot.pdf
TRINITY_DN4959_c0_g1:2598	si_a653	TRINITY_DN4959_c0_g1	2587	2607	2598	-31.70	-24.00	0.757097791798107	13.5	7-19,2601-2589	1-6,2607-2602[UP5];20-21,2588-2587[UP3]	..(((((((((((((......&......)))))))))))))..	AGAGGCGUUUCCCGAGAGUCC&AAUAUAUCGGGAAAUGCCUAU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a653_TRINITY_DN4959_c0_g1_2598_TPlot.pdf
TRINITY_DN4959_c0_g1:2599	si_a652	TRINITY_DN4959_c0_g1	2588	2608	2599	-31.90	-24.00	0.752351097178683	14.5	8-20,2601-2589	1-7,2608-2602[UP5];21-21,2588-2588[UP3]	.(((((((((((((.......&.......))))))))))))).	GAGGCGUUUCCCGAGAGUCCU&UAAUAUAUCGGGAAAUGCCUA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN4959_c0_g1_2599_TPlot.pdf
TRINITY_DN4959_c0_g1:2600	si_a651	TRINITY_DN4959_c0_g1	2589	2609	2600	-33.30	-23.60	0.708708708708709	15.5	9-21,2601-2589	1-8,2609-2602[UP5]	(((((((((((((........&........)))))))))))))	AGGCGUUUCCCGAGAGUCCUC&GUAAUAUAUCGGGAAAUGCCU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a651_TRINITY_DN4959_c0_g1_2600_TPlot.pdf
TRINITY_DN4959_c0_g1:2601	si_a650	TRINITY_DN4959_c0_g1	2590	2610	2601	-33.30	-22.30	0.66966966966967	17.5	10-21,2601-2590	1-9,2610-2602[UP5]	((((((((((((.........&.........))))))))))))	GGCGUUUCCCGAGAGUCCUCC&AGUAAUAUAUCGGGAAAUGCC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a650_TRINITY_DN4959_c0_g1_2601_TPlot.pdf
TRINITY_DN4959_c0_g1:2734	si_a142	TRINITY_DN4959_c0_g1	2722	2743	2734	-23.50	-16.30	0.693617021276596	6	2-11,2742-2733;13-15,2731-2729;16-21,2727-2722	1-1,2743-2743[UP5];12-12,2732-2732[SIL];x-x,2728-2728[BULt]	((((((.(((.((((((((((.&.)))))))))).)))-))))))	UUGGAGCCAGGAACGAUUAAUG&AAUUAAUCGUUGUUG-UUUUAA	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN4959_c0_g1_2734_TPlot.pdf
TRINITY_DN495_c0_g1:1855	si_a469	TRINITY_DN495_c0_g1	1845	1864	1855	-21.10	-14.50	0.687203791469194	7	4-15,1861-1850;17-21,1849-1845	1-3,1864-1862[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	AUAAC-AUAAUUACGUAUGUG&AUAAUAUGUAAUUAUUGUUAU	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN495_c0_g1_1855_TPlot.pdf
TRINITY_DN4960_c0_g1:6180	si_a602	TRINITY_DN4960_c0_g1	6165	6189	6180	-30.80	-22.90	0.743506493506493	9.5	3-18,6187-6172;19-21,6167-6165	1-2,6189-6188[UP5];x-x,6171-6168[BULt]	(((....((((((((((((((((..&..))))))))))))))))----)))	CGAGCUCUUGGAGUUGCGGAAGUAU&GAAUUUUCGCAAUUCCAA----UCG	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN4960_c0_g1_6180_TPlot.pdf
TRINITY_DN4960_c0_g1:6182	si_a600	TRINITY_DN4960_c0_g1	6171	6191	6182	-29.70	-21.90	0.737373737373737	10.5	5-20,6187-6172	1-4,6191-6188[UP5];21-21,6171-6171[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUUGGAGUUGCGGAAGUAUAG&CAGAAUUUUCGCAAUUCCAAU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN4960_c0_g1_6182_TPlot.pdf
TRINITY_DN4960_c0_g1:6262	si_s85	TRINITY_DN4960_c0_g1	6252	6275	6262	-33.80	-22.80	0.674556213017752	10.5	1-9,6275-6267;10-18,6262-6254;20-21,6253-6252	x-x,6266-6263[BULt];19-19,x-x[BULq]	((-(((((((((....(((((((((&)))))))))----))))))))).))	GC-AGGAAGAAGCAAAAGAGGAAAG&CUUUCCUUU----CUUCUUCUUCGC	3	0.999999999999962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN4960_c0_g1_6262_TPlot.pdf
TRINITY_DN4960_c0_g1:6267	si_s84	TRINITY_DN4960_c0_g1	6251	6276	6267	-32.30	-23.70	0.73374613003096	10.5	1-10,6276-6267;11-19,6262-6254;20-21,6252-6251	x-x,6266-6263[BULt];x-x,6253-6253[BULt]	((.(((((((((....((((((((((&))))))))))----)))))))))-))	CGCAGGAAGAAGCAAAAGAGGAAAGA&UCUUUCCUUU----CUUCUUCUU-CG	3	0.999994472798421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN4960_c0_g1_6267_TPlot.pdf
TRINITY_DN4960_c0_g1:6402	si_s631	TRINITY_DN4960_c0_g1	6386	6411	6402	-36.00	-24.50	0.680555555555556	18	2-10,6410-6402;11-18,6396-6389;20-21,6387-6386	1-1,6411-6411[UP5];x-x,6401-6397[BULt];19-19,6388-6388[SIL]	((.((((((((.....(((((((((.&.)))))))))-----)))))))).))	GGGGAGCGCCUUUCAGGCGGGAGGGC&AUCUUUUCGU-----AGGCGUUUGCC	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN4960_c0_g1_6402_TPlot.pdf
TRINITY_DN4960_c0_g1:6410	si_s312	TRINITY_DN4960_c0_g1	6400	6419	6410	-29.00	-19.00	0.655172413793103	12	5-13,6415-6407;15-20,6406-6401	1-4,6419-6416[UP5];14-14,x-x[BULq];21-21,6400-6400[UP3]	.((((((-(((((((((....&....))))))))).)))))).	AGGCGGG-AGGGCAGAACGCA&AAAAUUCUGUCCUUCUUGUUA	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN4960_c0_g1_6410_TPlot.pdf
TRINITY_DN4960_c0_g1:6415	si_s307	TRINITY_DN4960_c0_g1	6404	6420	6415	-32.90	-21.90	0.665653495440729	10.5	2-5,6419-6416;10-21,6415-6404	1-1,6420-6420[UP5];6-9,x-x[BULq]	((((((((((((----((((.&.))))....))))))))))))	GGGAGGGCAGAA----CGCAU&UUGCGAAAAUUCUGUCCUUCU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN4960_c0_g1_6415_TPlot.pdf
TRINITY_DN4960_c0_g1:6643	si_a761	TRINITY_DN4960_c0_g1	6631	6653	6643	-30.10	-20.30	0.674418604651163	10	1-6,6653-6648;7-11,6646-6642;12-21,6640-6631	x-x,6647-6647[BULt];x-x,6641-6641[BULt]	((((((((((.(((((.((((((&))))))-)))))-))))))))))	AAUCAGUCGAUGGAUCACGGAGG&CCUUUG-GGUUU-UUGAUUGAUU	2	0.99984729171278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN4960_c0_g1_6643_TPlot.pdf
TRINITY_DN4960_c0_g1:6644	si_a760	TRINITY_DN4960_c0_g1	6632	6654	6644	-31.10	-20.90	0.672025723472669	10	1-7,6654-6648;8-12,6646-6642;13-21,6640-6632	x-x,6647-6647[BULt];x-x,6641-6641[BULt]	(((((((((.(((((.(((((((&)))))))-)))))-)))))))))	AUCAGUCGAUGGAUCACGGAGGA&UCCUUUG-GGUUU-UUGAUUGAU	2	0.999704645783439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN4960_c0_g1_6644_TPlot.pdf
TRINITY_DN4960_c0_g1:6668	si_a329	TRINITY_DN4960_c0_g1	6666	6677	6668	-29.60	-19.60	0.662162162162162	8	11-21,6676-6666	10-10,6677-6677[SIL]	(((((((((((.&.)))))))))))	CGGGACGGGGGC&AUUUUUUUAUUC	2	0.999969339466232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN4960_c0_g1_6668_TPlot.pdf
TRINITY_DN49610_c0_g1:491	si_s68	TRINITY_DN49610_c0_g1	480	500	491	-23.10	-15.50	0.670995670995671	10.5	4-11,497-490;13-20,488-481	1-3,500-498[UP5];12-12,489-489[SIL];21-21,480-480[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UGAGAGAGACAAUAGGAGGCA&CAACUUCUAUUUUUUUUCUUU	0	0.701270659468624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN49610_c0_g1_491_TPlot.pdf
TRINITY_DN49611_c0_g1:274	si_s507	TRINITY_DN49611_c0_g1	263	283	274	-22.70	-14.80	0.651982378854626	6	2-7,282-277;9-14,275-270;16-19,268-265	1-1,283-283[UP5];8-8,276-276[SIL];15-15,269-269[SIL];20-21,264-263[UP3]	..((((.((((((.((((((.&.)))))).)))))).))))..	AAAAGAUUAUAGAUUUGUUUC&AAAACAAUUCUAUAUUCUUAA	4	0.999937557622403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN49611_c0_g1_274_TPlot.pdf
TRINITY_DN49617_c0_g1:652	si_s481	TRINITY_DN49617_c0_g1	638	661	652	-23.00	-15.10	0.656521739130435	9.5	1-10,661-652;11-13,648-646;16-21,643-638	x-x,651-649[BULt];14-15,645-644[SIL]	((((((..(((...((((((((((&))))))))))---)))..))))))	UAUUUGCUUAAAAUGUAUAGGAUC&GAUCCUAUAU---UUAUUUAAAUA	1	0.113730302158648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN49617_c0_g1_652_TPlot.pdf
TRINITY_DN4961_c0_g1:246	si_s94	TRINITY_DN4961_c0_g1	235	256	246	-35.50	-24.20	0.68169014084507	8	1-9,256-248;10-17,246-239	x-x,247-247[BULt];18-21,238-235[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	UUCACUGGAGCGAAAGAAGGAG&CUUCUUCUU-CGCUUCGGAUUG	2	0.998582868378132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN4961_c0_g1_246_TPlot.pdf
TRINITY_DN4961_c0_g1:249	si_s92	TRINITY_DN4961_c0_g1	237	258	249	-34.90	-26.50	0.759312320916905	6	1-11,258-248;12-19,246-239	x-x,247-247[BULt];20-21,238-237[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	CACUGGAGCGAAAGAAGGAGAA&UUCUUCUUCUU-CGCUUCGGAU	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN4961_c0_g1_249_TPlot.pdf
TRINITY_DN4961_c0_g1:254	si_s72	TRINITY_DN4961_c0_g1	242	263	254	-24.10	-21.10	0.87551867219917	6.5	1-18,263-246;19-21,244-242	x-x,245-245[BULt]	(((.((((((((((((((((((&))))))))))))))))))-)))	GAGCGAAAGAAGGAGAAUGGGA&UUCUAUUUUUUUUCUUUC-CUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4961_c0_g1_254_TPlot.pdf
TRINITY_DN4961_c0_g1:256	si_s70	TRINITY_DN4961_c0_g1	245	265	256	-25.80	-19.30	0.748062015503876	8.5	3-20,263-246	1-2,265-264[UP5];21-21,245-245[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGAAAGAAGGAGAAUGGGAAA&ACUUCUAUUUUUUUUCUUUCC	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN4961_c0_g1_256_TPlot.pdf
TRINITY_DN4961_c0_g1:257	si_s69	TRINITY_DN4961_c0_g1	246	266	257	-23.40	-19.30	0.824786324786325	9	4-21,263-246	1-3,266-264[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAAGAAGGAGAAUGGGAAAA&AACUUCUAUUUUUUUUCUUUC	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN4961_c0_g1_257_TPlot.pdf
TRINITY_DN4961_c0_g1:259	si_s67	TRINITY_DN4961_c0_g1	248	271	259	-25.60	-17.80	0.6953125	10.5	2-6,270-266;7-21,262-248	1-1,271-271[UP5];x-x,265-263[BULt]	(((((((((((((((...(((((.&.)))))---)))))))))))))))	AAGAAGGAGAAUGGGAAAAGUUGG&GCAACU---UCUAUUUUUUUUCUU	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN4961_c0_g1_259_TPlot.pdf
TRINITY_DN4961_c0_g1:973	si_a759	TRINITY_DN4961_c0_g1	962	981	973	-32.60	-21.90	0.671779141104294	7.5	1-7,981-975;10-20,973-963	8-9,974-974[AILq];21-21,962-962[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	ACGAUCAAAGACA-GAAGGAG&CUCCUUUGGGUUUUUGAUUGA	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN4961_c0_g1_973_TPlot.pdf
TRINITY_DN49623_c0_g1:665	si_a768	TRINITY_DN49623_c0_g1	652	674	665	-28.40	-19.20	0.676056338028169	5.5	2-10,673-665;11-19,663-655;20-21,653-652	1-1,674-674[UP5];x-x,664-664[BULt];x-x,654-654[BULt]	((.(((((((((.(((((((((.&.)))))))))-)))))))))-))	AGAAGUUGGAUCAAAUCAAGAAA&GUUUUUGAUU-GAUUCAACU-CU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN49623_c0_g1_665_TPlot.pdf
TRINITY_DN49624_c0_g1:190	si_a449	TRINITY_DN49624_c0_g1	179	199	190	-25.70	-19.20	0.747081712062257	5.5	2-5,198-195;7-20,193-180	1-1,199-199[UP5];6-6,194-194[SIL];21-21,179-179[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	GGUAUAACAACAAUUUUCUUC&UGAGAUAAUUGUUGUUAUAUA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN49624_c0_g1_190_TPlot.pdf
TRINITY_DN4962_c0_g1:1815	si_a894	TRINITY_DN4962_c0_g1	1804	1824	1815	-21.70	-15.40	0.709677419354839	5.5	2-14,1823-1811;16-21,1809-1804	1-1,1824-1824[UP5];15-15,1810-1810[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AUAUUGGUUGUUAUUAUUGUU&UAUAGUAAUAAUAAGUAAUAU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN4962_c0_g1_1815_TPlot.pdf
TRINITY_DN4962_c0_g1:1816	si_a893	TRINITY_DN4962_c0_g1	1805	1825	1816	-21.70	-14.20	0.654377880184332	7	3-15,1823-1811;17-21,1809-1805	1-2,1825-1824[UP5];16-16,1810-1810[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UAUUGGUUGUUAUUAUUGUUC&AUAUAGUAAUAAUAAGUAAUA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN4962_c0_g1_1816_TPlot.pdf
TRINITY_DN49636_c0_g1:254	si_s73	TRINITY_DN49636_c0_g1	243	263	254	-24.00	-25.10	1	1.5	1-21,263-243	NA	(((((((((((((((((((((&)))))))))))))))))))))	AAAGGAAGGAAAAAAGAUAGA&UCUAUUUUUUUUCUUUCCUUU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN49636_c0_g1_254_TPlot.pdf
TRINITY_DN4963_c0_g1:1960	si_s768	TRINITY_DN4963_c0_g1	1949	1968	1960	-26.80	-19.60	0.73134328358209	8.5	3-8,1966-1961;10-21,1960-1949	1-2,1968-1967[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	UAGUAGUGGUGA-UAGUCGGA&AACGAUUAAUUACUAUUGCUA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN4963_c0_g1_1960_TPlot.pdf
TRINITY_DN4964_c0_g1:1772	si_s43	TRINITY_DN4964_c0_g1	1760	1781	1772	-25.50	-17.10	0.670588235294118	3.5	1-17,1781-1765;18-18,1763-1763;20-21,1761-1760	x-x,1764-1764[BULt];19-19,1762-1762[SIL]	((.(.(((((((((((((((((&)))))))))))))))))-).))	CUAGCAAAUUCAGUUAUUAAAG&CUUUAAUAAUUGGAUUU-CAAG	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN4964_c0_g1_1772_TPlot.pdf
TRINITY_DN4964_c0_g1:2711	si_s350	TRINITY_DN4964_c0_g1	2700	2719	2711	-30.90	-20.40	0.660194174757282	6.5	1-5,2719-2715;7-18,2714-2703	6-6,x-x[BULq];19-21,2702-2700[UP3]	...((((((((((((-(((((&))))).))))))))))))...	AUCUUUAUUUCUUUG-CUCCC&GGGAGAUAAAGAAAUAGAUUG	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s350_TRINITY_DN4964_c0_g1_2711_TPlot.pdf
TRINITY_DN4964_c1_g2:1638	si_s78	TRINITY_DN4964_c1_g2	1627	1647	1638	-26.20	-18.20	0.694656488549618	6.5	3-12,1645-1636;14-21,1634-1627	1-2,1647-1646[UP5];13-13,1635-1635[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGAAGAAGAGGAAGAAGAACG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4964_c1_g2_1638_TPlot.pdf
TRINITY_DN4964_c1_g2:2011	si_s86	TRINITY_DN4964_c1_g2	2000	2021	2011	-32.90	-21.90	0.665653495440729	8.5	3-7,2019-2015;8-15,2013-2006;17-21,2004-2000	1-2,2021-2020[UP5];x-x,2014-2014[BULt];16-16,2005-2005[SIL]	(((((.((((((((.(((((..&..)))))-)))))))).)))))	AGUGAUGAAGAAGAUGAGGGUA&UUUCCUU-UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4964_c1_g2_2011_TPlot.pdf
TRINITY_DN4964_c1_g2:2710	si_s487	TRINITY_DN4964_c1_g2	2699	2719	2710	-18.40	-12.10	0.657608695652174	7.5	4-19,2716-2701	1-3,2719-2717[UP5];20-21,2700-2699[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUUUUGUAUUUAAAUAAAACA&AUAUUUAUUUAAAUAUAAACA	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN4964_c1_g2_2710_TPlot.pdf
TRINITY_DN4965_c1_g2:791	si_a439	TRINITY_DN4965_c1_g2	778	800	791	-32.40	-21.20	0.654320987654321	10.5	1-12,800-789;13-17,786-782	x-x,788-787[BULt];18-21,781-778[UP3]	....(((((..((((((((((((&))))))))))))--)))))....	CCGGUGUCUGCUAUAUCCGACGG&CCGUUGGAUAUG--AGAUAAUUG	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a439_TRINITY_DN4965_c1_g2_791_TPlot.pdf
TRINITY_DN4965_c1_g2:792	si_a438	TRINITY_DN4965_c1_g2	779	801	792	-31.70	-22.80	0.719242902208202	7	1-13,801-789;14-18,786-782	x-x,788-787[BULt];19-21,781-779[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	CGGUGUCUGCUAUAUCCGACGGA&UCCGUUGGAUAUG--AGAUAAUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN4965_c1_g2_792_TPlot.pdf
TRINITY_DN4965_c1_g2:793	si_a437	TRINITY_DN4965_c1_g2	780	802	793	-31.90	-22.80	0.714733542319749	7	2-14,801-789;15-19,786-782	1-1,802-802[UP5];x-x,788-787[BULt];20-21,781-780[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	GGUGUCUGCUAUAUCCGACGGAA&AUCCGUUGGAUAUG--AGAUAAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a437_TRINITY_DN4965_c1_g2_793_TPlot.pdf
TRINITY_DN4965_c1_g2:794	si_a436	TRINITY_DN4965_c1_g2	781	803	794	-33.80	-22.80	0.674556213017752	8	3-15,801-789;16-20,786-782	1-2,803-802[UP5];x-x,788-787[BULt];21-21,781-781[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	GUGUCUGCUAUAUCCGACGGAAU&GAUCCGUUGGAUAUG--AGAUAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a436_TRINITY_DN4965_c1_g2_794_TPlot.pdf
TRINITY_DN49677_c0_g1:1410	si_a68	TRINITY_DN49677_c0_g1	1400	1420	1410	-25.40	-16.70	0.65748031496063	5	1-8,1420-1413;9-16,1411-1404;19-21,1402-1400	x-x,1412-1412[BULt];17-18,1403-1403[AILq]	(((.-((((((((.((((((((&))))))))-))))))))..)))	UGAC-AACAAUUUCGAAAGAGG&CUUCUUUC-AAAUUGUUUUUCA	3	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN49677_c0_g1_1410_TPlot.pdf
TRINITY_DN49677_c0_g1:1512	si_s92	TRINITY_DN49677_c0_g1	1500	1521	1512	-34.90	-25.20	0.722063037249284	6	1-13,1521-1509;14-20,1507-1501	x-x,1508-1508[BULt];21-21,1500-1500[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	UUUUGAGGACGAAGAGGAGGAG&UUCUUCUUCUUCG-CUUCGGAU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN49677_c0_g1_1512_TPlot.pdf
TRINITY_DN4967_c0_g2:650	si_a675	TRINITY_DN4967_c0_g2	639	661	650	-34.00	-22.10	0.65	14	4-7,658-655;9-19,651-641	1-3,661-659[UP5];8-8,654-652[AILt];20-21,640-639[UP3]	..(((((((((((...((((...&...))))--.)))))))))))..	CCACCGCGUGAAUUCUGGGAGAG&GAUUCCU--UAUUCACGCGGUUU	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN4967_c0_g2_650_TPlot.pdf
TRINITY_DN4967_c2_g1:407	si_s76	TRINITY_DN4967_c2_g1	396	416	407	-23.60	-20.30	0.860169491525424	10	6-21,411-396	1-5,416-412[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAAGGGAAAGAAAAUGGCU&AUUUUUUUUCUUUCCUUUCUU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4967_c2_g1_407_TPlot.pdf
TRINITY_DN4971_c0_g1:8012	si_s77	TRINITY_DN4971_c0_g1	7997	8021	8012	-25.50	-18.20	0.713725490196078	11	1-5,8021-8017;8-15,8014-8007;16-21,8002-7997	6-7,8016-8015[SIL];x-x,8006-8003[BULt]	((((((....((((((((..(((((&)))))..))))))))----))))))	GAGGAAUUUCGGGAAAGAUUAGAGA&UUUUUUUUCUUUCCU----UUCUUC	2	0.999999999999943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4971_c0_g1_8012_TPlot.pdf
TRINITY_DN4971_c0_g1:8103	si_a445	TRINITY_DN4971_c0_g1	8092	8112	8103	-27.30	-18.26	0.668864468864469	11	1-7,8112-8106;12-20,8101-8093	8-11,8105-8102[SIL];21-21,8092-8092[UP3]	.(((((((((....(((((((&)))))))....))))))))).	GGACAACAGUCUGGUCAUGUC&GAUAUGAGAUAAUUGUUGUUA	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN4971_c0_g1_8103_TPlot.pdf
TRINITY_DN4971_c0_g1:8503	si_a499	TRINITY_DN4971_c0_g1	8492	8512	8503	-35.20	-24.80	0.704545454545454	8	1-5,8512-8508;8-17,8505-8496;19-21,8494-8492	6-7,8507-8506[SIL];18-18,8495-8495[SIL]	(((.((((((((((..(((((&)))))..)))))))))).)))	CUGCGGAAGACGAAUUGCGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.999927850476115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN4971_c0_g1_8503_TPlot.pdf
TRINITY_DN4971_c0_g1:8504	si_a498	TRINITY_DN4971_c0_g1	8493	8513	8504	-33.50	-24.30	0.725373134328358	10	2-6,8512-8508;9-18,8505-8496	1-1,8513-8513[UP5];7-8,8507-8506[SIL];19-21,8495-8493[UP3]	...((((((((((..(((((.&.)))))..))))))))))...	UGCGGAAGACGAAUUGCGGCC&UGUCGUUUUUCGUCUUCCUUG	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN4971_c0_g1_8504_TPlot.pdf
TRINITY_DN4971_c0_g1:8505	si_a497	TRINITY_DN4971_c0_g1	8494	8514	8505	-32.00	-24.30	0.759375	11	3-7,8512-8508;10-19,8505-8496	1-2,8514-8513[UP5];8-9,8507-8506[SIL];20-21,8495-8494[UP3]	..((((((((((..(((((..&..)))))..))))))))))..	GCGGAAGACGAAUUGCGGCCG&AUGUCGUUUUUCGUCUUCCUU	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN4971_c0_g1_8505_TPlot.pdf
TRINITY_DN4972_c0_g1:206	si_s713	TRINITY_DN4972_c0_g1	195	216	206	-32.00	-22.50	0.703125	8	1-7,216-210;8-17,208-199	x-x,209-209[BULt];18-21,198-195[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	ACACGUUUUUCCCUGGUUCGCU&AGUGAAC-AGGGAAAGAUAUUA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s713_TRINITY_DN4972_c0_g1_206_TPlot.pdf
TRINITY_DN4972_c0_g1:215	si_s705	TRINITY_DN4972_c0_g1	203	224	215	-31.40	-22.80	0.726114649681529	9	5-15,220-210;16-21,208-203	1-4,224-221[UP5];x-x,209-209[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	UUCCCUGGUUCGCUAAUAUUUA&GAUUUAUUAGUGAAC-AGGGAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN4972_c0_g1_215_TPlot.pdf
TRINITY_DN4972_c0_g1:216	si_s704	TRINITY_DN4972_c0_g1	204	225	216	-32.80	-21.90	0.667682926829268	11	6-16,220-210;17-21,208-204	1-5,225-221[UP5];x-x,209-209[BULt]	(((((.(((((((((((.....&.....)))))))))))-)))))	UCCCUGGUUCGCUAAUAUUUAU&CGAUUUAUUAGUGAAC-AGGGA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s704_TRINITY_DN4972_c0_g1_216_TPlot.pdf
TRINITY_DN4972_c0_g1:688	si_a98	TRINITY_DN4972_c0_g1	677	697	688	-26.40	-17.30	0.65530303030303	12	4-14,694-684	1-3,697-695[UP5];15-21,683-677[UP3]	.......(((((((((((...&...))))))))))).......	AUCAGACUCUUCGUUACCCUU&AAAGGUAACGAAGAUAAAAUA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN4972_c0_g1_688_TPlot.pdf
TRINITY_DN4972_c0_g1:794	si_s895	TRINITY_DN4972_c0_g1	783	803	794	-31.10	-21.00	0.67524115755627	10.5	1-15,803-789	16-21,788-783[UP3]	......(((((((((((((((&)))))))))))))))......	CUAUGAGAGGAGGAGGCUUGU&AUAGGCUUUCUCUUCAAUUUC	3	0.999840799792015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN4972_c0_g1_794_TPlot.pdf
TRINITY_DN4972_c0_g1:795	si_s894	TRINITY_DN4972_c0_g1	784	804	795	-29.10	-21.90	0.752577319587629	9.5	1-16,804-789	17-21,788-784[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUGAGAGGAGGAGGCUUGUU&AAUAGGCUUUCUCUUCAAUUU	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN4972_c0_g1_795_TPlot.pdf
TRINITY_DN4972_c0_g1:797	si_s892	TRINITY_DN4972_c0_g1	786	806	797	-29.50	-23.90	0.810169491525424	8	1-18,806-789	19-21,788-786[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGAGAGGAGGAGGCUUGUUUG&UAAAUAGGCUUUCUCUUCAAU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4972_c0_g1_797_TPlot.pdf
TRINITY_DN4972_c0_g1:798	si_s891	TRINITY_DN4972_c0_g1	787	807	798	-29.60	-25.50	0.861486486486486	7	1-19,807-789	20-21,788-787[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	GAGAGGAGGAGGCUUGUUUGU&AUAAAUAGGCUUUCUCUUCAA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN4972_c0_g1_798_TPlot.pdf
TRINITY_DN4972_c0_g1:801	si_s888	TRINITY_DN4972_c0_g1	790	810	801	-26.80	-22.10	0.824626865671642	9.5	4-21,807-790	1-3,810-808[UP5]	((((((((((((((((((...&...))))))))))))))))))	AGGAGGAGGCUUGUUUGUGGU&AAAAUAAAUAGGCUUUCUCUU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN4972_c0_g1_801_TPlot.pdf
TRINITY_DN4972_c0_g1:802	si_s887	TRINITY_DN4972_c0_g1	791	811	802	-26.80	-21.30	0.794776119402985	11.5	5-21,807-791	1-4,811-808[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGGAGGCUUGUUUGUGGUA&AAAAAUAAAUAGGCUUUCUCU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4972_c0_g1_802_TPlot.pdf
TRINITY_DN4972_c0_g1:803	si_s886	TRINITY_DN4972_c0_g1	792	812	803	-26.50	-20.20	0.762264150943396	12.5	6-21,807-792	1-5,812-808[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGGAGGCUUGUUUGUGGUAC&UAAAAAUAAAUAGGCUUUCUC	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN4972_c0_g1_803_TPlot.pdf
TRINITY_DN4972_c0_g1:905	si_s487	TRINITY_DN4972_c0_g1	894	914	905	-18.40	-12.00	0.652173913043478	7	1-3,914-912;5-17,910-898;20-21,895-894	4-4,911-911[SIL];18-19,897-896[SIL]	((..(((((((((((((.(((&))).)))))))))))))..))	UGGAUGUGUUUGGAUAAUUAU&AUAUUUAUUUAAAUAUAAACA	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN4972_c0_g1_905_TPlot.pdf
TRINITY_DN4972_c0_g2:144	si_s45	TRINITY_DN4972_c0_g2	133	153	144	-24.70	-17.00	0.688259109311741	8	4-15,150-139;17-21,137-133	1-3,153-151[UP5];16-16,138-138[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	GGCUUAGAGUCCAAUUAUGAG&UUAAUAAUUGGAUUUCAAGUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN4972_c0_g2_144_TPlot.pdf
TRINITY_DN4972_c0_g2:146	si_s43	TRINITY_DN4972_c0_g2	135	155	146	-25.50	-17.10	0.670588235294118	5	1-4,155-152;6-17,150-139;19-21,137-135	5-5,151-151[SIL];18-18,138-138[SIL]	(((.((((((((((((.((((&)))).)))))))))))).)))	CUUAGAGUCCAAUUAUGAGAG&CUUUAAUAAUUGGAUUUCAAG	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN4972_c0_g2_146_TPlot.pdf
TRINITY_DN49731_c0_g1:142	si_a421	TRINITY_DN49731_c0_g1	131	151	142	-26.40	-17.40	0.659090909090909	13	6-11,146-141;13-20,139-132	1-5,151-147[UP5];12-12,140-140[SIL];21-21,131-131[UP3]	.((((((((.((((((.....&.....)))))).)))))))).	AGGAUCCUAAGUUUAUAAGGA&UUUAAAUAAAUAUAGGAUCCG	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN49731_c0_g1_142_TPlot.pdf
TRINITY_DN4973_c0_g2:3098	si_a176	TRINITY_DN4973_c0_g2	3087	3106	3098	-31.70	-20.90	0.659305993690852	6	2-4,3105-3103;6-8,3101-3099;10-21,3098-3087	1-1,3106-3106[UP5];5-5,3102-3102[SIL];9-9,x-x[BULq]	((((((((((((-(((.(((.&.))).))).))))))))))))	AAAGAUAUUGUC-AGAAGGGC&ACCCGUCUAGAUAAUAUCUUU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN4973_c0_g2_3098_TPlot.pdf
TRINITY_DN4973_c0_g2:3493	si_a22	TRINITY_DN4973_c0_g2	3482	3502	3493	-23.50	-15.50	0.659574468085106	12.5	6-20,3497-3483	1-5,3502-3498[UP5];21-21,3482-3482[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUUGGAACUGAGAAUACUACA&CUAUUUAUUUUUAGUUCUAAG	4	0.999995733740282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN4973_c0_g2_3493_TPlot.pdf
TRINITY_DN4973_c1_g1:752	si_a817	TRINITY_DN4973_c1_g1	741	761	752	-30.90	-21.10	0.68284789644013	3.5	1-12,761-750;13-17,748-744;19-21,743-741	x-x,749-749[BULt];18-18,x-x[BULq]	(((-(((((.((((((((((((&))))))))))))-))))).)))	UUC-UUCUUCUUCUUCUUCUUC&GAAGAAGAAGAA-AGGAAAGAA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN4973_c1_g1_752_TPlot.pdf
TRINITY_DN49742_c0_g1:239	si_s76	TRINITY_DN49742_c0_g1	224	248	239	-23.60	-15.80	0.669491525423729	13	4-16,245-233;17-21,228-224	1-3,248-246[UP5];x-x,232-229[BULt]	(((((....(((((((((((((...&...)))))))))))))----)))))	GAGAAGGCUAGGGAGGAAGAAGUAA&AUUUUUUUUCUUUCCU----UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN49742_c0_g1_239_TPlot.pdf
TRINITY_DN49745_c0_g1:836	si_a595	TRINITY_DN49745_c0_g1	825	854	836	-30.30	-19.80	0.653465346534653	24.5	3-9,852-846;10-18,836-828	1-2,854-853[UP5];x-x,845-837[BULt];19-21,827-825[UP3]	...(((((((((.........(((((((..&..)))))))---------)))))))))...	ACGUGCGAGAAUUAAAGAGGAUCUGUCCAU&AAGGACAGA---------AUUUUCGCAAUU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN49745_c0_g1_836_TPlot.pdf
TRINITY_DN49747_c0_g1:130	si_s587	TRINITY_DN49747_c0_g1	119	139	130	-28.70	-19.00	0.662020905923345	11	4-12,136-128;14-18,126-122	1-3,139-137[UP5];13-13,127-127[SIL];19-21,121-119[UP3]	...(((((.(((((((((...&...))))))))).)))))...	ACCGGAUUGGUCCAUGGUAUU&AAAAUCAUGGAUAAAUCCAAG	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s587_TRINITY_DN49747_c0_g1_130_TPlot.pdf
TRINITY_DN4974_c0_g1:1331	si_a398	TRINITY_DN4974_c0_g1	1320	1339	1331	-22.40	-15.70	0.700892857142857	5	1-4,1339-1336;6-21,1335-1320	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	UGGACAAAACAGUUUU-UAUU&AAUAUAGAAUUGUUUUGUUUA	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN4974_c0_g1_1331_TPlot.pdf
TRINITY_DN4974_c0_g1:1487	si_s887	TRINITY_DN4974_c0_g1	1468	1496	1487	-26.80	-18.20	0.67910447761194	20.5	2-11,1495-1486;12-21,1477-1468	1-1,1496-1496[UP5];x-x,1485-1478[BULt]	((((((((((........((((((((((.&.))))))))))--------))))))))))	AGAGAGAGCUCAAGUGAAUGUUUGUUUUG&AAAAAUAAAUA--------GGCUUUCUCU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN4974_c0_g1_1487_TPlot.pdf
TRINITY_DN4975_c0_g1:3588	si_s620	TRINITY_DN4975_c0_g1	3577	3604	3588	-32.10	-22.60	0.70404984423676	20.5	4-6,3601-3599;7-21,3591-3577	1-3,3604-3602[UP5];x-x,3598-3592[BULt]	(((((((((((((((.......(((...&...)))-------)))))))))))))))	GCGGAAGGAUCGCUUUCCUGAAGGAGCC&AAAUCC-------AAGCGAUCUUUUCGU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN4975_c0_g1_3588_TPlot.pdf
TRINITY_DN4976_c0_g1:68	si_a444	TRINITY_DN4976_c0_g1	57	79	68	-29.30	-19.20	0.655290102389078	11	1-4,79-76;5-10,73-68;12-19,66-59	x-x,75-74[BULt];11-11,67-67[SIL];20-21,58-57[UP3]	..((((((((.((((((..((((&))))--)))))).))))))))..	UCCGGCAAUUUUCUCGUCUGUCC&GGAU--AUGAGAUAAUUGUUGUU	2	0.974564613511492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN4976_c0_g1_68_TPlot.pdf
TRINITY_DN4978_c0_g1:187	si_a556	TRINITY_DN4978_c0_g1	177	197	187	-33.40	-22.40	0.67065868263473	7.5	2-6,196-192;7-11,190-186;13-20,185-178	1-1,197-197[UP5];x-x,191-191[BULt];12-12,x-x[BULq];21-21,177-177[UP3]	.((((((((-(((((.(((((.&.)))))-))))).)))))))).	GUCAUGGGG-GAUAACAGAGAG&AUUUCU-UUAUCUCCCCGUGAA	2	0.979157316154238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN4978_c0_g1_187_TPlot.pdf
TRINITY_DN4978_c0_g1:188	si_a555	TRINITY_DN4978_c0_g1	178	198	188	-33.70	-22.20	0.658753709198813	7.5	3-7,196-192;8-12,190-186;14-21,185-178	1-2,198-197[UP5];x-x,191-191[BULt];13-13,x-x[BULq]	((((((((-(((((.(((((..&..)))))-))))).))))))))	UCAUGGGG-GAUAACAGAGAGU&UAUUUCU-UUAUCUCCCCGUGA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN4978_c0_g1_188_TPlot.pdf
TRINITY_DN4978_c0_g1:333	si_s80	TRINITY_DN4978_c0_g1	322	342	333	-28.20	-19.40	0.687943262411348	9	2-17,341-326	1-1,342-342[UP5];18-21,325-322[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGCUAGGAGAGGGAAGAGGAG&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN4978_c0_g1_333_TPlot.pdf
TRINITY_DN4978_c0_g1:334	si_s79	TRINITY_DN4978_c0_g1	323	343	334	-26.20	-21.10	0.805343511450382	8	1-18,343-326	19-21,325-323[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCUAGGAGAGGGAAGAGGAGA&UUUUUUCUUUCCUUUCUUCUU	2	0.998582868378132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN4978_c0_g1_334_TPlot.pdf
TRINITY_DN4978_c0_g1:335	si_s78	TRINITY_DN4978_c0_g1	324	344	335	-26.20	-21.50	0.820610687022901	7.5	1-19,344-326	20-21,325-324[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CUAGGAGAGGGAAGAGGAGAG&UUUUUUUCUUUCCUUUCUUCU	2	0.990244922553744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN4978_c0_g1_335_TPlot.pdf
TRINITY_DN4978_c0_g1:336	si_s77	TRINITY_DN4978_c0_g1	325	345	336	-25.50	-22.00	0.862745098039216	7.5	1-20,345-326	21-21,325-325[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UAGGAGAGGGAAGAGGAGAGG&UUUUUUUUCUUUCCUUUCUUC	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN4978_c0_g1_336_TPlot.pdf
TRINITY_DN4978_c0_g1:337	si_s76	TRINITY_DN4978_c0_g1	326	346	337	-23.60	-23.30	0.98728813559322	6.5	1-21,346-326	NA	(((((((((((((((((((((&)))))))))))))))))))))	AGGAGAGGGAAGAGGAGAGGU&AUUUUUUUUCUUUCCUUUCUU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN4978_c0_g1_337_TPlot.pdf
TRINITY_DN4978_c0_g1:338	si_s75	TRINITY_DN4978_c0_g1	327	347	338	-24.00	-22.70	0.945833333333333	7.5	2-21,346-327	1-1,347-347[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GGAGAGGGAAGAGGAGAGGUC&UAUUUUUUUUCUUUCCUUUCU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN4978_c0_g1_338_TPlot.pdf
TRINITY_DN4978_c0_g1:339	si_s74	TRINITY_DN4978_c0_g1	328	348	339	-25.00	-21.60	0.864	9	3-21,346-328	1-2,348-347[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAGAGGGAAGAGGAGAGGUCA&CUAUUUUUUUUCUUUCCUUUC	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN4978_c0_g1_339_TPlot.pdf
TRINITY_DN4978_c0_g1:340	si_a326	TRINITY_DN4978_c0_g1	328	349	340	-26.20	-18.50	0.706106870229008	10.5	1-11,349-339;13-18,336-331;20-21,329-328	12-12,338-337[AILt];19-19,330-330[SIL]	((.((((((..(((((((((((&)))))))))))-.)))))).))	GAGAGGGAAGAGGAGAGGUCAU&AUGAUUUUUUU-AUUCCUUGUC	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4978_c0_g1_340_TPlot.pdf
TRINITY_DN4978_c0_g1:341	si_s72	TRINITY_DN4978_c0_g1	330	350	341	-24.10	-17.60	0.730290456431535	13	5-21,346-330	1-4,350-347[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGGGAAGAGGAGAGGUCAUC&UUCUAUUUUUUUUCUUUCCUU	2	0.999999868459029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN4978_c0_g1_341_TPlot.pdf
TRINITY_DN4978_c0_g1:902	si_s642	TRINITY_DN4978_c0_g1	887	911	902	-38.60	-25.76	0.667357512953368	11.5	1-14,911-898;17-19,891-889	15-16,897-892[AILt];20-21,888-887[UP3]	..(((......((((((((((((((&))))))))))))))----..)))..	AAUGUUAAUGGUGGGGGCGAAUGCC&GGCGUUUGCCCUCG----AUACAAU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN4978_c0_g1_902_TPlot.pdf
TRINITY_DN49797_c0_g1:207	si_a71	TRINITY_DN49797_c0_g1	196	213	207	-23.30	-15.60	0.669527896995708	9.5	1-6,213-208;10-21,207-196	7-9,x-x[BULq]	((((((((((((---((((((&))))))...))))))))))))	UGGUGAAAGACA---UGGAGG&CUUUCAAAUUGUUUUUCAUUA	4	0.99999999986239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN49797_c0_g1_207_TPlot.pdf
TRINITY_DN49797_c0_g1:447	si_s520	TRINITY_DN49797_c0_g1	436	456	447	-24.00	-16.68	0.695	7	2-13,455-444;17-21,440-436	1-1,456-456[UP5];14-16,443-441[SIL]	(((((...((((((((((((.&.))))))))))))...)))))	GAGUGUAAUCGAAUUGAGAGC&AUUCUUAAUUCGAAAUCAUUU	0	0.0530721497888202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN49797_c0_g1_447_TPlot.pdf
TRINITY_DN49799_c0_g1:296	si_a784	TRINITY_DN49799_c0_g1	285	305	296	-24.70	-20.80	0.842105263157895	6.5	3-21,303-285	1-2,305-304[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAAUGGAGAAAUGGAAGGAA&ACUCUUCUAUUUUUCUAUUUU	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN49799_c0_g1_296_TPlot.pdf
TRINITY_DN49799_c0_g1:299	si_a781	TRINITY_DN49799_c0_g1	288	308	299	-27.40	-18.00	0.656934306569343	12	6-21,303-288	1-5,308-304[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGGAGAAAUGGAAGGAAGAA&UCAACUCUUCUAUUUUUCUAU	2	0.999893558965426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN49799_c0_g1_299_TPlot.pdf
TRINITY_DN497_c0_g1:1384	si_a631	TRINITY_DN497_c0_g1	1373	1395	1384	-25.70	-16.90	0.657587548638132	8.5	1-7,1395-1389;8-20,1386-1374	x-x,1388-1387[BULt];21-21,1373-1373[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	GUCGAAGAAGUCGAAUUAUAAUG&UAUUAUG--UCGAUUUUUUUGAG	4	0.999999918942414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN497_c0_g1_1384_TPlot.pdf
TRINITY_DN4981_c0_g1:1757	si_a470	TRINITY_DN4981_c0_g1	1746	1766	1757	-21.30	-14.00	0.657276995305164	7	1-8,1766-1759;10-17,1757-1750	9-9,1758-1758[SIL];18-21,1749-1746[UP3]	....((((((((.((((((((&)))))))).))))))))....	AAGUACAAUAAUAGCAUAUUA&UAAUAUGUAAUUAUUGUUAUA	3	0.999999522802842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN4981_c0_g1_1757_TPlot.pdf
TRINITY_DN4981_c0_g1:1758	si_a469	TRINITY_DN4981_c0_g1	1747	1767	1758	-21.10	-14.00	0.663507109004739	7	2-9,1766-1759;11-18,1757-1750	1-1,1767-1767[UP5];10-10,1758-1758[SIL];19-21,1749-1747[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	AGUACAAUAAUAGCAUAUUAC&AUAAUAUGUAAUUAUUGUUAU	4	0.999996869783681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN4981_c0_g1_1758_TPlot.pdf
TRINITY_DN4981_c0_g1:1760	si_a467	TRINITY_DN4981_c0_g1	1749	1769	1760	-21.10	-14.00	0.663507109004739	9	4-11,1766-1759;13-20,1757-1750	1-3,1769-1767[UP5];12-12,1758-1758[SIL];21-21,1749-1749[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	UACAAUAAUAGCAUAUUACCA&AUAUAAUAUGUAAUUAUUGUU	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN4981_c0_g1_1760_TPlot.pdf
TRINITY_DN4981_c0_g1:1761	si_a466	TRINITY_DN4981_c0_g1	1750	1770	1761	-21.50	-14.00	0.651162790697674	9	5-12,1766-1759;14-21,1757-1750	1-4,1770-1767[UP5];13-13,1758-1758[SIL]	((((((((.((((((((....&....)))))))).))))))))	ACAAUAAUAGCAUAUUACCAG&UAUAUAAUAUGUAAUUAUUGU	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN4981_c0_g1_1761_TPlot.pdf
TRINITY_DN4981_c0_g1:296	si_a635	TRINITY_DN4981_c0_g1	282	305	296	-26.10	-19.00	0.727969348659004	12.5	1-5,305-301;7-11,299-295;12-21,291-282	6-6,300-300[SIL];x-x,294-292[BULt]	((((((((((...(((((.(((((&))))).)))))---))))))))))	GUUACUCAAAAACGAGGUGGACGU&AUGUCGAUUUU---UUUGAGUAAU	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN4981_c0_g1_296_TPlot.pdf
TRINITY_DN4981_c0_g1:301	si_a630	TRINITY_DN4981_c0_g1	287	310	301	-25.80	-18.50	0.717054263565891	8.5	1-10,310-301;12-16,299-295;17-21,291-287	11-11,300-300[SIL];x-x,294-292[BULt]	(((((...(((((.((((((((((&)))))))))).)))))---)))))	UCAAAAACGAGGUGGACGUGAUAC&GUAUUAUGUCGAUUUU---UUUGA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN4981_c0_g1_301_TPlot.pdf
TRINITY_DN4981_c0_g1:317	si_a692	TRINITY_DN4981_c0_g1	305	326	317	-34.50	-23.00	0.666666666666667	6	1-6,326-321;9-12,318-315;14-19,313-308;20-21,306-305	7-8,320-319[SIL];13-13,314-314[SIL];x-x,307-307[BULt]	((.((((((.((((..((((((&))))))..)))).))))))-))	UGAUACCAGCUGUGGACGAAAC&GUUUCGAACACAACUGGUA-CA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a692_TRINITY_DN4981_c0_g1_317_TPlot.pdf
TRINITY_DN4981_c0_g1:892	si_a142	TRINITY_DN4981_c0_g1	881	901	892	-23.50	-15.40	0.65531914893617	16	6-17,896-885	1-5,901-897[UP5];18-21,884-881[UP3]	....((((((((((((.....&.....))))))))))))....	CGAUGACGACAGCGGUGAUGA&AAUUAAUCGUUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN4981_c0_g1_892_TPlot.pdf
TRINITY_DN4982_c0_g1:1326	si_a664	TRINITY_DN4982_c0_g1	1315	1335	1326	-29.60	-19.70	0.66554054054054	7.5	1-4,1335-1332;6-17,1330-1319	5-5,1331-1331[SIL];18-21,1318-1315[UP3]	....((((((((((((.((((&)))).))))))))))))....	UUAUGGGAUCAAUAGGAGUUU&AAAUGCCUAUUGAUUCCUUAU	2	0.994287804141701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN4982_c0_g1_1326_TPlot.pdf
TRINITY_DN4983_c0_g1:1135	si_a71	TRINITY_DN4983_c0_g1	1124	1146	1135	-23.30	-15.50	0.665236051502146	9.5	1-7,1146-1140;9-20,1136-1125	8-8,1139-1137[AILt];21-21,1124-1124[UP3]	.((((((((((((...(((((((&)))))))--.)))))))))))).	CAAUGGAAAACAACAAUUGGGAG&CUUUCAA--AUUGUUUUUCAUUA	2	0.999999548991085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN4983_c0_g1_1135_TPlot.pdf
TRINITY_DN4983_c0_g1:233	si_a375	TRINITY_DN4983_c0_g1	222	247	233	-24.00	-16.20	0.675	12.5	1-7,247-241;8-20,235-223	x-x,240-236[BULt];21-21,222-222[UP3]	.(((((((((((((.....(((((((&)))))))-----))))))))))))).	AAAUUCGAGAUUAUGGCAAUUUUGAU&AUCAAAA-----AUGAUUUCGAAUUA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN4983_c0_g1_233_TPlot.pdf
TRINITY_DN4983_c0_g1:234	si_a374	TRINITY_DN4983_c0_g1	223	248	234	-25.60	-17.20	0.671875	12	1-8,248-241;9-21,235-223	x-x,240-236[BULt]	(((((((((((((.....((((((((&))))))))-----)))))))))))))	AAUUCGAGAUUAUGGCAAUUUUGAUU&GAUCAAAA-----AUGAUUUCGAAUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN4983_c0_g1_234_TPlot.pdf
TRINITY_DN4983_c0_g1:490	si_a306	TRINITY_DN4983_c0_g1	478	499	490	-33.50	-22.10	0.659701492537313	8.5	2-11,498-489;12-16,487-483;18-20,481-479	1-1,499-499[UP5];x-x,488-488[BULt];17-17,482-482[SIL];21-21,478-478[UP3]	.(((.(((((.((((((((((.&.))))))))))-))))).))).	AGGAAAAGUCAUAGGCGGAUCA&AGAUUCGCUUG-GAUUUAUCCA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN4983_c0_g1_490_TPlot.pdf
TRINITY_DN4983_c0_g1:491	si_a305	TRINITY_DN4983_c0_g1	479	500	491	-32.80	-21.60	0.658536585365854	9.5	3-12,498-489;13-17,487-483;19-21,481-479	1-2,500-499[UP5];x-x,488-488[BULt];18-18,482-482[SIL]	(((.(((((.((((((((((..&..))))))))))-))))).)))	GGAAAAGUCAUAGGCGGAUCAA&AAGAUUCGCUUG-GAUUUAUCC	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN4983_c0_g1_491_TPlot.pdf
TRINITY_DN4983_c0_g1:691	si_a326	TRINITY_DN4983_c0_g1	680	702	691	-26.20	-17.70	0.675572519083969	8	2-6,701-697;7-19,694-682;21-21,680-680	1-1,702-702[UP5];x-x,696-695[BULt];20-20,681-681[SIL]	(.(((((((((((((..(((((.&.)))))--))))))))))))).)	GUCAAGGAAUGGAAAACAAUCAA&AUGAUU--UUUUUAUUCCUUGUC	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN4983_c0_g1_691_TPlot.pdf
TRINITY_DN4983_c0_g1:692	si_a325	TRINITY_DN4983_c0_g1	681	703	692	-25.90	-17.00	0.656370656370656	10	3-7,701-697;8-20,694-682	1-2,703-702[UP5];x-x,696-695[BULt];21-21,681-681[UP3]	.(((((((((((((..(((((..&..)))))--))))))))))))).	UCAAGGAAUGGAAAACAAUCAAU&CAUGAUU--UUUUUAUUCCUUGU	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN4983_c0_g1_692_TPlot.pdf
TRINITY_DN4983_c0_g2:220	si_a372	TRINITY_DN4983_c0_g2	209	228	220	-29.40	-19.40	0.659863945578231	13	1-6,228-223;12-19,218-211	7-11,222-219[AILq];20-21,210-209[UP3]	..((((((((....-((((((&)))))).....))))))))..	GCCGAAAUCAGAAG-GGUCCG&CGGAUCAAAAAUGAUUUCGAA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN4983_c0_g2_220_TPlot.pdf
TRINITY_DN4983_c0_g3:184	si_s581	TRINITY_DN4983_c0_g3	173	193	184	-22.40	-15.70	0.700892857142857	6.5	3-12,191-182;14-19,180-175	1-2,193-192[UP5];13-13,181-181[SIL];20-21,174-173[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	GAUGUCCAAGAUUUUUUUAAA&AAUAAAAAAAUCAUGGAUAAA	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s581_TRINITY_DN4983_c0_g3_184_TPlot.pdf
TRINITY_DN4984_c0_g1:1909	si_a652	TRINITY_DN4984_c0_g1	1898	1918	1909	-31.90	-21.30	0.667711598746082	13.5	6-9,1913-1910;11-20,1908-1899	1-5,1918-1914[UP5];10-10,1909-1909[SIL];21-21,1898-1898[UP3]	.((((((((((.((((.....&.....)))).)))))))))).	GAGGCGUUUCCGGAUGAGGCA&UAAUAUAUCGGGAAAUGCCUA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN4984_c0_g1_1909_TPlot.pdf
TRINITY_DN4984_c0_g1:238	si_s93	TRINITY_DN4984_c0_g1	227	247	238	-34.80	-22.90	0.658045977011494	8.5	1-11,247-237;13-17,235-231	12-12,236-236[SIL];18-21,230-227[UP3]	....(((((.(((((((((((&))))))))))).)))))....	GCAUCGAGGAGGAGAAGGAGA&UCUUCUUCUUCGCUUCGGAUU	2	0.999999971893639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN4984_c0_g1_238_TPlot.pdf
TRINITY_DN4984_c0_g1:6371	si_a771	TRINITY_DN4984_c0_g1	6360	6380	6371	-29.40	-19.68	0.669387755102041	6	3-12,6378-6369;16-21,6365-6360	1-2,6380-6379[UP5];13-15,6368-6366[SIL]	((((((...((((((((((..&..))))))))))...))))))	AGAAGAAGGGAAUCAAUCAUC&UUUGAUUGAUUCAACUCUUCU	0	0.113586368491334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN4984_c0_g1_6371_TPlot.pdf
TRINITY_DN4984_c0_g1:66	si_s628	TRINITY_DN4984_c0_g1	55	75	66	-35.40	-24.70	0.69774011299435	7	1-10,75-66;12-16,64-60;18-20,58-56	11-11,65-65[SIL];17-17,59-59[SIL];21-21,55-55[UP3]	.(((.(((((.((((((((((&)))))))))).))))).))).	CAGCUCCUGCAGAAGGAUCGC&GCGAUCUUUUCGUAGGCGUUU	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN4984_c0_g1_66_TPlot.pdf
TRINITY_DN49855_c0_g1:102	si_a283	TRINITY_DN49855_c0_g1	91	111	102	-28.30	-22.90	0.809187279151943	9.5	6-21,106-91	1-5,111-107[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUAAGUCCAAGCGAUGGCAG&AAAAGAUCGCUUGGAUUUAAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN49855_c0_g1_102_TPlot.pdf
TRINITY_DN49855_c0_g1:103	si_a282	TRINITY_DN49855_c0_g1	92	112	103	-30.30	-22.00	0.726072607260726	11.5	7-21,106-92	1-6,112-107[UP5]	(((((((((((((((......&......)))))))))))))))	UUAAGUCCAAGCGAUGGCAGA&GAAAAGAUCGCUUGGAUUUAA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN49855_c0_g1_103_TPlot.pdf
TRINITY_DN4986_c0_g1:2564	si_a594	TRINITY_DN4986_c0_g1	2556	2573	2564	-32.30	-21.00	0.65015479876161	8	1-11,2573-2563;15-18,2562-2559	12-14,x-x[BULq];19-21,2558-2556[UP3]	...((((---(((((((((((&)))))))))))...))))...	UCAGCGA---UUUUGUCCUUC&GAAGGACAGAAUUUUCGCAAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN4986_c0_g1_2564_TPlot.pdf
TRINITY_DN4986_c1_g3:134	si_a458	TRINITY_DN4986_c1_g3	122	143	134	-23.80	-15.60	0.65546218487395	8	2-11,142-133;13-14,131-130;15-21,128-122	1-1,143-143[UP5];12-12,132-132[SIL];x-x,129-129[BULt]	(((((((.((.((((((((((.&.)))))))))).))-)))))))	UACGUGUAUAAAUGUGACAGCU&UGUUGUUAUAUAUA-AUAUGUA	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN4986_c1_g3_134_TPlot.pdf
TRINITY_DN4986_c4_g1:515	si_s485	TRINITY_DN4986_c4_g1	504	524	515	-18.10	-13.70	0.756906077348066	7	3-19,522-506	1-2,524-523[UP5];20-21,505-504[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAUAUAUUUGAAUAAGUAUUC&CUAUAUUUAUUUAAAUAUAAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN4986_c4_g1_515_TPlot.pdf
TRINITY_DN4986_c4_g1:605	si_a303	TRINITY_DN4986_c4_g1	590	614	605	-28.40	-19.38	0.682394366197183	12	2-11,613-604;13-21,598-590	1-1,614-614[UP5];12-12,603-599[AILt]	(((((((((.....((((((((((.&.))))))))))----.)))))))))	AUAAAUCCAUAUUUGUGAAUCUUUG&AAAAGAUUCGC----UUGGAUUUAU	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN4986_c4_g1_605_TPlot.pdf
TRINITY_DN49874_c0_g1:77	si_a641	TRINITY_DN49874_c0_g1	66	86	77	-23.60	-18.10	0.766949152542373	11.5	6-21,81-66	1-5,86-82[UP5]	((((((((((((((((.....&.....))))))))))))))))	CGAUGUAUUACUUAAGUUUUU&AUUUUUUUGAGUAAUAUAUCG	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN49874_c0_g1_77_TPlot.pdf
TRINITY_DN49874_c0_g1:78	si_a640	TRINITY_DN49874_c0_g1	67	88	78	-24.10	-15.80	0.655601659751037	12.5	1-2,88-87;7-21,81-67	3-6,86-82[AILt]	(((((((((((((((.....((&))-....)))))))))))))))	GAUGUAUUACUUAAGUUUUUUC&GA-UUUUUUUGAGUAAUAUAUC	4	0.999998243863789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN49874_c0_g1_78_TPlot.pdf
TRINITY_DN4987_c0_g1:1639	si_s88	TRINITY_DN4987_c0_g1	1627	1649	1639	-34.80	-22.70	0.652298850574713	8.5	1-3,1649-1647;5-13,1644-1636;15-17,1634-1632;18-21,1630-1627	4-4,1646-1645[AILt];14-14,1635-1635[SIL];x-x,1631-1631[BULt]	((((.(((.(((((((((..(((&)))-.))))))))).)))-))))	GAGGACGAUGAAGGAGAGUUGGA&UCC-UUUCUUCUUCUUCG-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN4987_c0_g1_1639_TPlot.pdf
TRINITY_DN49886_c0_g1:342	si_a653	TRINITY_DN49886_c0_g1	333	351	342	-31.70	-20.70	0.652996845425867	5	1-11,351-341;15-21,339-333	12-14,340-340[AILq]	(((((((.--(((((((((((&)))))))))))...)))))))	AUAGGCAC--CUCGAUAUAUU&AAUAUAUCGGGAAAUGCCUAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a653_TRINITY_DN49886_c0_g1_342_TPlot.pdf
TRINITY_DN49893_c0_g1:192	si_a713	TRINITY_DN49893_c0_g1	181	198	192	-29.60	-19.82	0.669594594594595	11.5	1-6,198-193;12-21,190-181	7-11,192-191[AILq]	((((((((((..---((((((&)))))).....))))))))))	CGAGUGGCGAGC---UUGGAG&UUCCAAAAUAAUCGUUACUCG	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a713_TRINITY_DN49893_c0_g1_192_TPlot.pdf
TRINITY_DN498_c0_g1:2050	si_a854	TRINITY_DN498_c0_g1	2035	2059	2050	-25.00	-16.80	0.672	9.5	4-15,2056-2045;16-21,2040-2035	1-3,2059-2057[UP5];x-x,2044-2041[BULt]	((((((....((((((((((((...&...))))))))))))----))))))	UAAUAGACCUUUGGAUUUCAAGACU&UAACUUGAAAUCCAA----UUAUUA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN498_c0_g1_2050_TPlot.pdf
TRINITY_DN49903_c0_g1:211	si_s771	TRINITY_DN49903_c0_g1	200	220	211	-25.20	-17.10	0.678571428571429	11.5	4-17,217-204	1-3,220-218[UP5];18-21,203-200[UP3]	....((((((((((((((...&...))))))))))))))....	CUGCAGCAGUAGUAGUUGGAG&GAUUAAUUACUAUUGCUAUAA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN49903_c0_g1_211_TPlot.pdf
TRINITY_DN49918_c0_g1:177	si_s96	TRINITY_DN49918_c0_g1	160	186	177	-37.20	-24.20	0.650537634408602	15.5	1-11,186-176;12-15,170-167;17-20,164-161	x-x,175-171[BULt];16-16,166-165[AILt];21-21,160-160[UP3]	.((((..((((.....(((((((((((&)))))))))))-----))))-.)))).	ACCAGACCCGAAAAUUGGCGAGGAAGA&UCUUCUUCGCU-----UCGG-AUUGGA	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN49918_c0_g1_177_TPlot.pdf
TRINITY_DN49918_c0_g1:180	si_s93	TRINITY_DN49918_c0_g1	164	189	180	-34.80	-22.70	0.652298850574713	12.5	3-14,187-176;15-18,170-167	1-2,189-188[UP5];x-x,175-171[BULt];19-21,166-164[UP3]	...((((.....((((((((((((..&..))))))))))))-----))))...	GACCCGAAAAUUGGCGAGGAAGAAAG&UCUUCUUCUUCGCU-----UCGGAUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN49918_c0_g1_180_TPlot.pdf
TRINITY_DN49918_c0_g1:499	si_s80	TRINITY_DN49918_c0_g1	488	509	499	-28.20	-18.60	0.659574468085106	6	1-9,509-501;10-11,499-498;13-20,496-489	x-x,500-500[BULt];12-12,497-497[SIL];21-21,488-488[UP3]	.((((((((.((.(((((((((&)))))))))-)).)))))))).	AGAGAAGGACGGUAAAGAAAAA&UUUUUCUUU-CCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN49918_c0_g1_499_TPlot.pdf
TRINITY_DN49918_c0_g1:738	si_s608	TRINITY_DN49918_c0_g1	727	747	738	-26.70	-18.20	0.681647940074906	6	2-12,746-736;14-18,734-730	1-1,747-747[UP5];13-13,735-735[SIL];19-21,729-727[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	CCAGGAUUAAAGAAAGAUUCA&CGAAUCUUUUUUAAAUCCAAG	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN49918_c0_g1_738_TPlot.pdf
TRINITY_DN49918_c0_g1:739	si_s607	TRINITY_DN49918_c0_g1	728	748	739	-27.60	-18.20	0.659420289855072	7	3-13,746-736;15-19,734-730	1-2,748-747[UP5];14-14,735-735[SIL];20-21,729-728[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	CAGGAUUAAAGAAAGAUUCAU&GCGAAUCUUUUUUAAAUCCAA	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN49918_c0_g1_739_TPlot.pdf
TRINITY_DN49918_c0_g1:830	si_a886	TRINITY_DN49918_c0_g1	819	844	830	-25.30	-16.60	0.656126482213439	18	1-5,844-840;6-17,834-823	x-x,839-835[BULt];18-21,822-819[UP3]	....((((((((((((.....(((((&)))))-----))))))))))))....	CUCCGUUGCUGUGUUGGCAUUGUUGC&GCAAU-----CAAUAUAGUAAUAAUA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a886_TRINITY_DN49918_c0_g1_830_TPlot.pdf
TRINITY_DN49918_c0_g1:831	si_a885	TRINITY_DN49918_c0_g1	820	845	831	-25.60	-16.70	0.65234375	18	2-6,844-840;7-18,834-823	1-1,845-845[UP5];x-x,839-835[BULt];19-21,822-820[UP3]	...((((((((((((.....(((((.&.)))))-----))))))))))))...	UCCGUUGCUGUGUUGGCAUUGUUGCG&UGCAAU-----CAAUAUAGUAAUAAU	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN49918_c0_g1_831_TPlot.pdf
TRINITY_DN4992_c0_g1:1219	si_s86	TRINITY_DN4992_c0_g1	1208	1232	1219	-32.90	-26.40	0.802431610942249	10.5	2-7,1231-1226;8-21,1221-1208	1-1,1232-1232[UP5];x-x,1225-1222[BULt]	((((((((((((((....((((((.&.))))))----))))))))))))))	AGUGAAGAAGAAGAGGAUGAGGAAG&UUUCCUU----UCUUCUUCUUCGCU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN4992_c0_g1_1219_TPlot.pdf
TRINITY_DN4992_c0_g1:1221	si_s82	TRINITY_DN4992_c0_g1	1209	1231	1221	-28.90	-20.40	0.705882352941176	9	1-6,1231-1226;7-12,1224-1219;13-19,1217-1211	x-x,1225-1225[BULt];x-x,1218-1218[BULt];20-21,1210-1209[UP3]	..(((((((.((((((.((((((&))))))-))))))-)))))))..	GUGAAGAAGAAGAGGAUGAGGAA&UUUCUU-UCCUUU-CUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN4992_c0_g1_1221_TPlot.pdf
TRINITY_DN4992_c0_g1:1222	si_s810	TRINITY_DN4992_c0_g1	1211	1232	1222	-27.90	-18.70	0.670250896057348	10	1-4,1232-1229;6-8,1227-1225;9-17,1223-1215	5-5,1228-1228[SIL];x-x,1224-1224[BULt];18-21,1214-1211[UP3]	....(((((((((.(((.((((&)))).)))-)))))))))....	GAAGAAGAAGAGGAUGAGGAAG&CUUCGUUA-CCUUUUCUUAAUA	4	0.999999920598482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN4992_c0_g1_1222_TPlot.pdf
TRINITY_DN4992_c0_g1:1226	si_s807	TRINITY_DN4992_c0_g1	1214	1235	1226	-28.90	-22.50	0.778546712802768	6.5	1-7,1235-1229;9-11,1227-1225;12-20,1223-1215	8-8,1228-1228[SIL];x-x,1224-1224[BULt];21-21,1214-1214[UP3]	.(((((((((.(((.(((((((&))))))).)))-))))))))).	GAAGAAGAGGAUGAGGAAGAUA&UAUCUUCGUUA-CCUUUUCUUA	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN4992_c0_g1_1226_TPlot.pdf
TRINITY_DN4992_c0_g1:936	si_a83	TRINITY_DN4992_c0_g1	925	945	936	-24.50	-16.50	0.673469387755102	6	2-17,944-929	1-1,945-945[UP5];18-21,928-925[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGAAUUUCUUAAUAAUGAAGG&UUUUCAUUAUUAAGAAAAGGU	1	0.0346210970133541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN4992_c0_g1_936_TPlot.pdf
TRINITY_DN49932_c0_g1:1935	si_a146	TRINITY_DN49932_c0_g1	1921	1944	1935	-29.70	-21.50	0.723905723905724	11	3-16,1942-1929;17-20,1925-1922	1-2,1944-1943[UP5];x-x,1928-1926[BULt];21-21,1921-1921[UP3]	.((((...((((((((((((((..&..))))))))))))))---)))).	CGCCUCCCUGAAGCAGCAGCGAAG&AAUCGUUGUUGUUUUA---AGGUC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN49932_c0_g1_1935_TPlot.pdf
TRINITY_DN49932_c0_g1:1937	si_a144	TRINITY_DN49932_c0_g1	1926	1946	1937	-27.40	-20.30	0.740875912408759	11	5-18,1942-1929;20-21,1927-1926	1-4,1946-1943[UP5];19-19,1928-1928[SIL]	((.((((((((((((((....&....)))))))))))))).))	CCCUGAAGCAGCAGCGAAGGA&UUAAUCGUUGUUGUUUUAAGG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN49932_c0_g1_1937_TPlot.pdf
TRINITY_DN49932_c0_g1:1938	si_a143	TRINITY_DN49932_c0_g1	1927	1947	1938	-25.10	-18.20	0.725099601593625	14	6-19,1942-1929	1-5,1947-1943[UP5];20-21,1928-1927[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCUGAAGCAGCAGCGAAGGAC&AUUAAUCGUUGUUGUUUUAAG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN49932_c0_g1_1938_TPlot.pdf
TRINITY_DN49932_c0_g1:1939	si_a142	TRINITY_DN49932_c0_g1	1928	1948	1939	-23.50	-18.20	0.774468085106383	14.5	7-20,1942-1929	1-6,1948-1943[UP5];21-21,1928-1928[UP3]	.((((((((((((((......&......)))))))))))))).	CUGAAGCAGCAGCGAAGGACA&AAUUAAUCGUUGUUGUUUUAA	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN49932_c0_g1_1939_TPlot.pdf
TRINITY_DN4993_c0_g1:1053	si_a627	TRINITY_DN4993_c0_g1	1042	1062	1053	-29.50	-20.30	0.688135593220339	8.5	1-4,1062-1059;7-7,1056-1056;10-21,1053-1042	5-6,1058-1057[SIL];8-9,1055-1054[SIL]	((((((((((((..(..((((&))))..)..))))))))))))	AAAAAAUUGACAGUAGUCGCC&GGCGUAUUAUGUCGAUUUUUU	2	0.97754125916965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN4993_c0_g1_1053_TPlot.pdf
TRINITY_DN4993_c0_g1:1054	si_a626	TRINITY_DN4993_c0_g1	1043	1063	1054	-30.20	-19.70	0.652317880794702	9.5	2-5,1062-1059;8-8,1056-1056;11-21,1053-1043	1-1,1063-1063[UP5];6-7,1058-1057[SIL];9-10,1055-1054[SIL]	(((((((((((..(..((((.&.))))..)..)))))))))))	AAAAAUUGACAGUAGUCGCCC&AGGCGUAUUAUGUCGAUUUUU	0	0.270712629840638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN4993_c0_g1_1054_TPlot.pdf
TRINITY_DN4993_c0_g1:1241	si_s59	TRINITY_DN4993_c0_g1	1229	1250	1241	-29.20	-19.00	0.650684931506849	11.5	5-11,1246-1240;12-20,1238-1230	1-4,1250-1247[UP5];x-x,1239-1239[BULt];21-21,1229-1229[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	CAGUGGAGGUCUGCUAACAAGG&UCAAGUUAGCA-ACUUCUAUUU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN4993_c0_g1_1241_TPlot.pdf
TRINITY_DN4993_c0_g1:1842	si_s522	TRINITY_DN4993_c0_g1	1831	1852	1842	-23.80	-15.50	0.651260504201681	7.5	1-4,1852-1849;5-12,1847-1840;15-21,1837-1831	x-x,1848-1848[BULt];13-14,1839-1838[SIL]	(((((((..((((((((.((((&))))-))))))))..)))))))	GAGAGUGCGUUCGAGUUGGAGA&UCUU-AAUUCGAAAUCAUUUUU	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN4993_c0_g1_1842_TPlot.pdf
TRINITY_DN4994_c0_g1:1023	si_a758	TRINITY_DN4994_c0_g1	1011	1033	1023	-34.00	-23.90	0.702941176470588	9.5	1-4,1033-1030;5-12,1028-1021;13-19,1019-1013	x-x,1029-1029[BULt];x-x,1020-1020[BULt];20-21,1012-1011[UP3]	..(((((((.((((((((.((((&))))-))))))))-)))))))..	ACGUCGAAGUGCCCGAAGAGAGG&CCUC-CUUUGGGU-UUUUGAUUG	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN4994_c0_g1_1023_TPlot.pdf
TRINITY_DN4994_c0_g1:1024	si_a757	TRINITY_DN4994_c0_g1	1012	1034	1024	-33.10	-23.90	0.722054380664652	8	2-5,1033-1030;6-13,1028-1021;14-20,1019-1013	1-1,1034-1034[UP5];x-x,1029-1029[BULt];x-x,1020-1020[BULt];21-21,1012-1012[UP3]	.(((((((.((((((((.((((.&.))))-))))))))-))))))).	CGUCGAAGUGCCCGAAGAGAGGA&ACCUC-CUUUGGGU-UUUUGAUU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN4994_c0_g1_1024_TPlot.pdf
TRINITY_DN4994_c0_g1:1025	si_a756	TRINITY_DN4994_c0_g1	1013	1035	1025	-33.10	-23.90	0.722054380664652	9	3-6,1033-1030;7-14,1028-1021;15-21,1019-1013	1-2,1035-1034[UP5];x-x,1029-1029[BULt];x-x,1020-1020[BULt]	(((((((.((((((((.((((..&..))))-))))))))-)))))))	GUCGAAGUGCCCGAAGAGAGGAA&AACCUC-CUUUGGGU-UUUUGAU	3	0.986592518485829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN4994_c0_g1_1025_TPlot.pdf
TRINITY_DN4994_c0_g1:731	si_s68	TRINITY_DN4994_c0_g1	719	740	731	-23.10	-17.20	0.744588744588744	8.5	2-10,739-731;12-21,728-719	1-1,740-740[UP5];11-11,730-729[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	AGAGAGAAGAUUGUGGAAGUUC&CAACUUCUAU-UUUUUUUCUUU	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN4994_c0_g1_731_TPlot.pdf
TRINITY_DN4994_c0_g1:752	si_a283	TRINITY_DN4994_c0_g1	741	761	752	-28.30	-19.00	0.671378091872792	12.5	5-18,757-744	1-4,761-758[UP5];19-21,743-741[UP3]	...((((((((((((((....&....))))))))))))))...	CAGAGAUCCAAGUGAUUGAGC&AAAAGAUCGCUUGGAUUUAAA	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN4994_c0_g1_752_TPlot.pdf
TRINITY_DN4994_c0_g1:755	si_s40	TRINITY_DN4994_c0_g1	743	766	755	-24.30	-15.90	0.654320987654321	12.5	1-5,766-762;6-10,759-755;13-21,751-743	x-x,761-760[BULt];11-12,754-752[AILt]	(((((((((...(((((..(((((&)))))--)))))-..)))))))))	GAGAUCCAAGUGAUUGAGCGGAUU&AAUCU--UUAAU-AAUUGGAUUUC	2	0.995319218271231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN4994_c0_g1_755_TPlot.pdf
TRINITY_DN4996_c0_g2:497	si_a872	TRINITY_DN4996_c0_g2	486	506	497	-27.00	-18.40	0.681481481481481	10	5-16,502-491;18-20,489-487	1-4,506-503[UP5];17-17,490-490[SIL];21-21,486-486[UP3]	.(((.((((((((((((....&....)))))))))))).))).	AGGUAGCGACUAAAUCUCAGA&UUAAAGAUUUAGUUGCAAUCA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN4996_c0_g2_497_TPlot.pdf
TRINITY_DN4996_c1_g1:3630	si_a494	TRINITY_DN4996_c1_g1	3620	3639	3630	-29.50	-20.10	0.68135593220339	11	6-16,3634-3624;18-21,3623-3620	1-5,3639-3635[UP5];17-17,x-x[BULq]	((((-(((((((((((.....&.....))))))))))).))))	GAAG-CGAAAAACGGCUAGGG&AAUAUGUCGUUUUUCGUCUUC	4	0.999999965227629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN4996_c1_g1_3630_TPlot.pdf
TRINITY_DN4999_c0_g1:1299	si_a120	TRINITY_DN4999_c0_g1	1288	1308	1299	-30.50	-20.20	0.662295081967213	11.5	1-9,1308-1300;12-16,1297-1293	10-11,1299-1298[SIL];17-21,1292-1288[UP3]	.....(((((..(((((((((&)))))))))..))))).....	UCGCAGCUGUUCGGCAAGCUC&GAGCUUGUUUUAUAGCAAUAG	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN4999_c0_g1_1299_TPlot.pdf
TRINITY_DN4999_c0_g1:1301	si_a118	TRINITY_DN4999_c0_g1	1290	1310	1301	-30.70	-20.50	0.667752442996743	11.5	3-11,1308-1300;14-18,1297-1293	1-2,1310-1309[UP5];12-13,1299-1298[SIL];19-21,1292-1290[UP3]	...(((((..(((((((((..&..)))))))))..)))))...	GCAGCUGUUCGGCAAGCUCCA&ACGAGCUUGUUUUAUAGCAAU	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN4999_c0_g1_1301_TPlot.pdf
TRINITY_DN4999_c0_g1:1303	si_a116	TRINITY_DN4999_c0_g1	1292	1312	1303	-31.10	-20.50	0.659163987138264	12	5-13,1308-1300;16-20,1297-1293	1-4,1312-1309[UP5];14-15,1299-1298[SIL];21-21,1292-1292[UP3]	.(((((..(((((((((....&....)))))))))..))))).	AGCUGUUCGGCAAGCUCCAGA&AUACGAGCUUGUUUUAUAGCA	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN4999_c0_g1_1303_TPlot.pdf
TRINITY_DN4999_c0_g1:2271	si_a732	TRINITY_DN4999_c0_g1	2260	2281	2271	-45.40	-29.66	0.653303964757709	15.5	1-5,2281-2277;12-17,2269-2264;19-21,2262-2260	6-11,2276-2270[AILt];18-18,2263-2263[SIL]	(((.((((((.......(((((&)))))-......)))))).)))	GGCGGGGGGUUUAACGCGCCCG&CGGGC-AUCUUUACCCCUGGCC	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a732_TRINITY_DN4999_c0_g1_2271_TPlot.pdf
TRINITY_DN4999_c0_g1:3968	si_s495	TRINITY_DN4999_c0_g1	3957	3977	3968	-19.80	-14.70	0.742424242424242	9	4-17,3974-3961	1-3,3977-3975[UP5];18-21,3960-3957[UP3]	....((((((((((((((...&...))))))))))))))....	UUUAGUUUUGUUUAUAUUGAU&UUAAAUAUAAACAAAACAAUU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN4999_c0_g1_3968_TPlot.pdf
TRINITY_DN4999_c0_g1:3970	si_s493	TRINITY_DN4999_c0_g1	3959	3979	3970	-19.80	-14.70	0.742424242424242	11	6-19,3974-3961	1-5,3979-3975[UP5];20-21,3960-3959[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAGUUUUGUUUAUAUUGAUCG&AUUUAAAUAUAAACAAAACAA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN4999_c0_g1_3970_TPlot.pdf
TRINITY_DN4999_c0_g1:3971	si_s492	TRINITY_DN4999_c0_g1	3960	3980	3971	-20.10	-14.70	0.731343283582089	12	7-20,3974-3961	1-6,3980-3975[UP5];21-21,3960-3960[UP3]	.((((((((((((((......&......)))))))))))))).	AGUUUUGUUUAUAUUGAUCGC&UAUUUAAAUAUAAACAAAACA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN4999_c0_g1_3971_TPlot.pdf
TRINITY_DN49_c0_g1:149	si_a318	TRINITY_DN49_c0_g1	139	158	149	-22.50	-14.70	0.653333333333333	7	2-10,157-149;12-20,148-140	1-1,158-158[UP5];11-11,x-x[BULq];21-21,139-139[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	UUAGAAAAGU-AUGGAUGGAG&AUUUAUCCAUGAUUUUUUUAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN49_c0_g1_149_TPlot.pdf
TRINITY_DN49_c0_g1:769	si_a71	TRINITY_DN49_c0_g1	758	779	769	-23.30	-16.32	0.700429184549356	10	1-5,779-775;9-21,770-758	6-8,774-771[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	UAAUGGAAGACAGCAUGGAAAG&CUUUC-AAAUUGUUUUUCAUUA	3	0.999994126720142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN49_c0_g1_769_TPlot.pdf
TRINITY_DN4_c0_g1:1064	si_a549	TRINITY_DN4_c0_g1	1053	1074	1064	-29.50	-21.72	0.736271186440678	10	2-7,1073-1068;11-21,1063-1053	1-1,1074-1074[UP5];8-10,1067-1064[AILt]	(((((((((((....((((((.&.))))))-...)))))))))))	GGAGGUAGAGAUUUGAGAUUGU&UCAAUCU-AUUUCUUUAUCUCC	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN4_c0_g1_1064_TPlot.pdf
TRINITY_DN4_c0_g1:1179	si_a75	TRINITY_DN4_c0_g1	1168	1189	1179	-21.30	-14.30	0.671361502347418	8.5	1-6,1189-1184;7-10,1182-1179;12-20,1177-1169	x-x,1183-1183[BULt];11-11,1178-1178[SIL];21-21,1168-1168[UP3]	.(((((((((.((((.((((((&))))))-)))).))))))))).	GUGGUGAUGAUGGACAAAUUUG&CAAAUU-GUUUUUCAUUAUUAA	3	0.999999999935389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN4_c0_g1_1179_TPlot.pdf
TRINITY_DN4_c0_g1:434	si_s892	TRINITY_DN4_c0_g1	423	443	434	-29.50	-19.60	0.664406779661017	16	7-18,437-426	1-6,443-438[UP5];19-21,425-423[UP3]	...((((((((((((......&......))))))))))))...	AAGGAAGAGAGAGCUAGAAGA&UAAAUAGGCUUUCUCUUCAAU	4	0.9999970577487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN4_c0_g1_434_TPlot.pdf
TRINITY_DN4_c0_g1:436	si_s890	TRINITY_DN4_c0_g1	425	445	436	-29.50	-19.60	0.664406779661017	17.5	9-20,437-426	1-8,445-438[UP5];21-21,425-425[UP3]	.((((((((((((........&........)))))))))))).	GGAAGAGAGAGCUAGAAGAGA&AAUAAAUAGGCUUUCUCUUCA	2	0.997754019103068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN4_c0_g1_436_TPlot.pdf
TRINITY_DN50011_c0_g1:259	si_a870	TRINITY_DN50011_c0_g1	248	268	259	-24.80	-16.20	0.653225806451613	17.5	8-18,261-251	1-7,268-262[UP5];19-21,250-248[UP3]	...(((((((((((.......&.......)))))))))))...	GCAGCAGCUAAGUCACUGUUG&UAUUAAAGAUUUAGUUGCAAU	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN50011_c0_g1_259_TPlot.pdf
TRINITY_DN50027_c0_g1:156	si_a633	TRINITY_DN50027_c0_g1	145	170	156	-26.40	-17.20	0.651515151515151	17.5	4-8,167-163;9-21,157-145	1-3,170-168[UP5];x-x,162-158[BULt]	(((((((((((((.....(((((...&...)))))-----)))))))))))))	UACUCAAGAAGAUUCGCACGGCAAUA&UUAUGUCG-----AUUUUUUUGAGUA	4	0.999999999999499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN50027_c0_g1_156_TPlot.pdf
TRINITY_DN50030_c0_g1:671	si_s79	TRINITY_DN50030_c0_g1	660	680	671	-26.20	-19.00	0.725190839694656	5.5	1-11,680-670;13-19,668-662	12-12,669-669[SIL];20-21,661-660[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UUGAAGAGAAGAAAGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN50030_c0_g1_671_TPlot.pdf
TRINITY_DN50030_c0_g1:673	si_s77	TRINITY_DN50030_c0_g1	662	682	673	-25.50	-18.70	0.733333333333333	5.5	3-13,680-670;15-21,668-662	1-2,682-681[UP5];14-14,669-669[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GAAGAGAAGAAAGAAAAGACA&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999560016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN50030_c0_g1_673_TPlot.pdf
TRINITY_DN5003_c0_g1:428	si_s30	TRINITY_DN5003_c0_g1	417	437	428	-24.80	-16.86	0.679838709677419	8.5	1-6,437-432;11-21,427-417	7-10,431-428[SIL]	(((((((((((....((((((&))))))....)))))))))))	UAUUAGAGAUUGGAGUGCAAU&AUUGCAACUAAAUCUUUAAUA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN5003_c0_g1_428_TPlot.pdf
TRINITY_DN5003_c0_g1:505	si_a883	TRINITY_DN5003_c0_g1	494	514	505	-27.20	-18.60	0.683823529411765	4.5	1-4,514-511;6-11,509-504;13-21,502-494	5-5,510-510[SIL];12-12,503-503[SIL]	(((((((((.((((((.((((&)))).)))))).)))))))))	UGUUACUAUUUUGAUUACAAC&GUUGCAAUCAAUAUAGUAAUA	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN5003_c0_g1_505_TPlot.pdf
TRINITY_DN5003_c0_g1:909	si_s68	TRINITY_DN5003_c0_g1	898	919	909	-23.10	-15.80	0.683982683982684	8.5	2-9,918-911;10-19,909-900	1-1,919-919[UP5];x-x,910-910[BULt];20-21,899-898[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	CCAGAAGAAGGAUUGGAAGUUA&CAACUUCUA-UUUUUUUUCUUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5003_c0_g1_909_TPlot.pdf
TRINITY_DN50047_c0_g1:571	si_a784	TRINITY_DN50047_c0_g1	560	580	571	-24.70	-18.50	0.748987854251012	7.5	3-17,578-564	1-2,580-579[UP5];18-21,563-560[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUUUAGAGAAAUAGAAGAAA&ACUCUUCUAUUUUUCUAUUUU	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN50047_c0_g1_571_TPlot.pdf
TRINITY_DN50047_c0_g1:573	si_a782	TRINITY_DN50047_c0_g1	562	582	573	-26.40	-18.50	0.700757575757576	9.5	5-19,578-564	1-4,582-579[UP5];20-21,563-562[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUUAGAGAAAUAGAAGAAAGA&CAACUCUUCUAUUUUUCUAUU	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN50047_c0_g1_573_TPlot.pdf
TRINITY_DN5004_c0_g1:2200	si_a630	TRINITY_DN5004_c0_g1	2189	2211	2200	-25.80	-18.18	0.704651162790698	9	1-8,2211-2204;11-21,2199-2189	9-10,2203-2200[AILt]	(((((((((((....((((((((&))))))))--..)))))))))))	UCAAAAAAAUCCACUCAUGAUAC&GUAUUAUG--UCGAUUUUUUUGA	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN5004_c0_g1_2200_TPlot.pdf
TRINITY_DN5004_c0_g1:241	si_a769	TRINITY_DN5004_c0_g1	230	250	241	-26.70	-19.70	0.737827715355805	6	1-8,250-243;10-15,241-236;17-21,234-230	9-9,242-242[SIL];16-16,235-235[SIL]	(((((.((((((.((((((((&)))))))).)))))).)))))	AAGAGAUGAGUCUGUCAAAGA&UUUUUGAUUGAUUCAACUCUU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN5004_c0_g1_241_TPlot.pdf
TRINITY_DN50059_c0_g1:22	si_a635	TRINITY_DN50059_c0_g1	9	31	22	-26.10	-17.38	0.665900383141762	10	1-12,31-20;15-20,15-10	13-14,19-16[AILt];21-21,9-9[UP3]	.((((((....((((((((((((&))))))))))))--..)))))).	UUUACUCCUUUGAGAAUUGACAU&AUGUCGAUUUUU--UUGAGUAAU	4	0.999999999933184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN50059_c0_g1_22_TPlot.pdf
TRINITY_DN5005_c0_g1:2182	si_s71	TRINITY_DN5005_c0_g1	2171	2191	2182	-25.70	-17.00	0.66147859922179	4.5	2-17,2190-2175;20-21,2172-2171	1-1,2191-2191[UP5];18-19,2174-2173[SIL]	((..((((((((((((((((.&.))))))))))))))))..))	AGAUAGGAAAAGAAAUAGAAA&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5005_c0_g1_2182_TPlot.pdf
TRINITY_DN5005_c0_g1:2184	si_s69	TRINITY_DN5005_c0_g1	2172	2193	2184	-23.40	-16.20	0.692307692307692	7.5	4-19,2190-2175;20-21,2173-2172	1-3,2193-2191[UP5];x-x,2174-2174[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	GAUAGGAAAAGAAAUAGAAAAG&AACUUCUAUUUUUUUUCUU-UC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5005_c0_g1_2184_TPlot.pdf
TRINITY_DN5006_c0_g1:405	si_s775	TRINITY_DN5006_c0_g1	394	414	405	-25.00	-16.40	0.656	8.5	2-17,413-398	1-1,414-414[UP5];18-21,397-394[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCCAUUGUAGUGGUAGUAAUA&AAUUACUAUUGCUAUAAAACA	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN5006_c0_g1_405_TPlot.pdf
TRINITY_DN5006_c0_g1:406	si_s774	TRINITY_DN5006_c0_g1	395	415	406	-24.70	-16.40	0.663967611336032	9.5	3-18,413-398	1-2,415-414[UP5];19-21,397-395[UP3]	...((((((((((((((((..&..))))))))))))))))...	CCAUUGUAGUGGUAGUAAUAG&UAAUUACUAUUGCUAUAAAAC	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN5006_c0_g1_406_TPlot.pdf
TRINITY_DN5006_c0_g1:412	si_s7	TRINITY_DN5006_c0_g1	401	426	412	-21.70	-15.20	0.700460829493088	14.5	1-7,426-420;8-19,414-403	x-x,419-415[BULt];20-21,402-401[UP3]	..((((((((((((.....(((((((&)))))))-----))))))))))))..	UAGUGGUAGUAAUAGCUCUAGUAGUA&UAUUACU-----UAUUAUUACUAUAU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN5006_c0_g1_412_TPlot.pdf
TRINITY_DN50073_c0_g1:968	si_a784	TRINITY_DN50073_c0_g1	957	981	968	-24.70	-16.16	0.654251012145749	15	2-8,980-974;11-21,967-957	1-1,981-981[UP5];9-10,973-968[AILt]	(((((((((((......(((((((.&.)))))))----..)))))))))))	GAAAUGGAAAAUAAUGAGGAAGAGA&ACUCUUCU----AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN50073_c0_g1_968_TPlot.pdf
TRINITY_DN50073_c0_g1:970	si_a70	TRINITY_DN50073_c0_g1	959	979	970	-23.90	-17.70	0.740585774058577	6.5	1-6,979-974;9-21,971-959	7-8,973-972[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	AAUGGAAAAUAAUGAGGAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN50073_c0_g1_970_TPlot.pdf
TRINITY_DN50074_c0_g1:38	si_s74	TRINITY_DN50074_c0_g1	27	48	38	-25.00	-16.70	0.668	11.5	1-7,48-42;10-19,38-29	8-9,41-39[AILt];20-21,28-27[UP3]	..((((((((((...(((((((&)))))))-..))))))))))..	AUAAGGAGAGAGUUCGAGAUAG&CUAUUUU-UUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN50074_c0_g1_38_TPlot.pdf
TRINITY_DN50074_c0_g1:458	si_a125	TRINITY_DN50074_c0_g1	446	467	458	-25.00	-16.60	0.664	5.5	2-11,466-457;12-21,455-446	1-1,467-467[UP5];x-x,456-456[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAUUAUUAUUGGUUGUAAAACU&UGUUUUAUAGC-AAUAGUAAUU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN50074_c0_g1_458_TPlot.pdf
TRINITY_DN5009_c0_g2:423	si_s804	TRINITY_DN5009_c0_g2	412	432	423	-27.90	-19.98	0.716129032258065	6	2-16,431-417;20-21,413-412	1-1,432-432[UP5];17-19,416-414[SIL]	((...(((((((((((((((.&.)))))))))))))))...))	GAUAUGGUAAUGAGGAUAAAC&UUUUAUCUUCGUUACCUUUUC	0	0.158948826875126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5009_c0_g2_423_TPlot.pdf
TRINITY_DN500_c0_g1:6758	si_a836	TRINITY_DN500_c0_g1	6747	6767	6758	-24.10	-18.80	0.780082987551867	4.5	1-15,6767-6753;17-20,6751-6748	16-16,6752-6752[SIL];21-21,6747-6747[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	CUGGUUGCUUCUGUUUUUUUU&AAAAAAAAUAGAAGUUGCUAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN500_c0_g1_6758_TPlot.pdf
TRINITY_DN500_c0_g1:6759	si_a835	TRINITY_DN500_c0_g1	6748	6768	6759	-26.00	-21.90	0.842307692307692	3.5	1-16,6768-6753;18-21,6751-6748	17-17,6752-6752[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UGGUUGCUUCUGUUUUUUUUC&GAAAAAAAAUAGAAGUUGCUA	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN500_c0_g1_6759_TPlot.pdf
TRINITY_DN500_c0_g1:6761	si_a833	TRINITY_DN500_c0_g1	6750	6770	6761	-25.60	-21.30	0.83203125	4	2-18,6769-6753;20-21,6751-6750	1-1,6770-6770[UP5];19-19,6752-6752[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GUUGCUUCUGUUUUUUUUCUG&AAGAAAAAAAAUAGAAGUUGC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a833_TRINITY_DN500_c0_g1_6761_TPlot.pdf
TRINITY_DN500_c0_g1:6762	si_a832	TRINITY_DN500_c0_g1	6751	6771	6762	-23.10	-19.70	0.852813852813853	6	3-19,6769-6753	1-2,6771-6770[UP5];20-21,6752-6751[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UUGCUUCUGUUUUUUUUCUGC&AAAGAAAAAAAAUAGAAGUUG	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a832_TRINITY_DN500_c0_g1_6762_TPlot.pdf
TRINITY_DN500_c0_g1:6763	si_a831	TRINITY_DN500_c0_g1	6752	6772	6763	-23.40	-19.70	0.841880341880342	7	4-20,6769-6753	1-3,6772-6770[UP5];21-21,6752-6752[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGCUUCUGUUUUUUUUCUGCU&GAAAGAAAAAAAAUAGAAGUU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a831_TRINITY_DN500_c0_g1_6763_TPlot.pdf
TRINITY_DN500_c0_g1:6764	si_a830	TRINITY_DN500_c0_g1	6753	6773	6764	-25.80	-19.70	0.763565891472868	8	5-21,6769-6753	1-4,6773-6770[UP5]	(((((((((((((((((....&....)))))))))))))))))	GCUUCUGUUUUUUUUCUGCUU&GGAAAGAAAAAAAAUAGAAGU	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a830_TRINITY_DN500_c0_g1_6764_TPlot.pdf
TRINITY_DN500_c0_g1:6765	si_a829	TRINITY_DN500_c0_g1	6754	6773	6765	-25.70	-18.50	0.719844357976654	5.5	1-3,6773-6771;6-21,6769-6754	4-5,6770-6770[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	CUUCUGUUUUUUUUCUG-CUU&AGGAAAGAAAAAAAAUAGAAG	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a829_TRINITY_DN500_c0_g1_6765_TPlot.pdf
TRINITY_DN500_c0_g1:6766	si_a828	TRINITY_DN500_c0_g1	6755	6774	6766	-24.10	-16.40	0.680497925311203	5.5	1-4,6774-6771;7-21,6769-6755	5-6,6770-6770[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	UUCUGUUUUUUUUCUG-CUUU&AAGGAAAGAAAAAAAAUAGAA	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN500_c0_g1_6766_TPlot.pdf
TRINITY_DN500_c0_g1:6767	si_a827	TRINITY_DN500_c0_g1	6756	6775	6767	-24.00	-16.70	0.695833333333333	5.5	1-5,6775-6771;8-21,6769-6756	6-7,6770-6770[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	UCUGUUUUUUUUCUG-CUUUU&AAAGGAAAGAAAAAAAAUAGA	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a827_TRINITY_DN500_c0_g1_6767_TPlot.pdf
TRINITY_DN500_c1_g1:444	si_a97	TRINITY_DN500_c1_g1	433	454	444	-26.00	-17.80	0.684615384615385	10	3-7,452-448;9-20,445-434	1-2,454-453[UP5];8-8,447-446[AILt];21-21,433-433[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	CUUUUAUCUUCGUAGGCUUUGU&AAAAGGU-AACGAAGAUAAAAU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN500_c1_g1_444_TPlot.pdf
TRINITY_DN500_c1_g1:485	si_s111	TRINITY_DN500_c1_g1	474	494	485	-24.80	-16.80	0.67741935483871	6	2-15,493-480;17-19,478-476	1-1,494-494[UP5];16-16,479-479[SIL];20-21,475-474[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	GAUAUGUUUCUGUUUUCCGAA&AUUGGAAAAUAGAAAAAUAGA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN500_c1_g1_485_TPlot.pdf
TRINITY_DN50107_c0_g1:123	si_a573	TRINITY_DN50107_c0_g1	112	132	123	-28.70	-18.70	0.651567944250871	9	5-16,128-117;18-20,115-113	1-4,132-129[UP5];17-17,116-116[SIL];21-21,112-112[UP3]	.(((.((((((((((((....&....)))))))))))).))).	AUGUAACAAACAUACGAAACA&UGAAUCGUAUGUUUGUAACAA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN50107_c0_g1_123_TPlot.pdf
TRINITY_DN50107_c0_g1:124	si_a572	TRINITY_DN50107_c0_g1	113	133	124	-30.40	-19.90	0.654605263157895	5.5	1-3,133-131;6-17,128-117;19-21,115-113	4-5,130-129[SIL];18-18,116-116[SIL]	(((.((((((((((((..(((&)))..)))))))))))).)))	UGUAACAAACAUACGAAACAU&GUGAAUCGUAUGUUUGUAACA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN50107_c0_g1_124_TPlot.pdf
TRINITY_DN50107_c0_g1:25	si_s619	TRINITY_DN50107_c0_g1	4	34	25	-31.70	-21.00	0.662460567823344	27	5-11,30-24;12-21,13-4	1-4,34-31[UP5];x-x,23-14[BULt]	((((((((((..........(((((((....&....)))))))----------))))))))))	CGAAAAGAUCAUAUUAGUAUGCUUGGAAUGU&UAAAUCCAAGC----------GAUCUUUUCG	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN50107_c0_g1_25_TPlot.pdf
TRINITY_DN5010_c0_g1:1007	si_a154	TRINITY_DN5010_c0_g1	993	1016	1007	-27.00	-18.30	0.677777777777778	13.5	3-11,1014-1006;12-19,1002-995	1-2,1016-1015[UP5];x-x,1005-1003[BULt];20-21,994-993[UP3]	..((((((((...(((((((((..&..)))))))))---))))))))..	AUUGGAUUGACACCCUUGAAGCUG&UUGUUUUAAGG---UCAAUCUAUU	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN5010_c0_g1_1007_TPlot.pdf
TRINITY_DN5010_c0_g1:1008	si_a153	TRINITY_DN5010_c0_g1	994	1017	1008	-28.70	-19.30	0.672473867595819	12.5	1-2,1017-1016;4-12,1014-1006;13-20,1002-995	3-3,1015-1015[SIL];x-x,1005-1003[BULt];21-21,994-994[UP3]	.((((((((...(((((((((.((&)).)))))))))---)))))))).	UUGGAUUGACACCCUUGAAGCUGC&GUUGUUUUAAGG---UCAAUCUAU	2	0.951413723591217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN5010_c0_g1_1008_TPlot.pdf
TRINITY_DN5010_c0_g1:1009	si_a152	TRINITY_DN5010_c0_g1	995	1018	1009	-29.20	-19.20	0.657534246575342	9.5	2-3,1017-1016;5-13,1014-1006;14-21,1002-995	1-1,1018-1018[UP5];4-4,1015-1015[SIL];x-x,1005-1003[BULt]	((((((((...(((((((((.((.&.)).)))))))))---))))))))	UGGAUUGACACCCUUGAAGCUGCC&UGUUGUUUUAAGG---UCAAUCUA	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN5010_c0_g1_1009_TPlot.pdf
TRINITY_DN5010_c0_g1:1133	si_a512	TRINITY_DN5010_c0_g1	1121	1142	1133	-37.80	-24.80	0.656084656084656	6	1-4,1142-1139;6-17,1137-1126;18-19,1124-1123	5-5,1138-1138[SIL];x-x,1125-1125[BULt];20-21,1122-1121[UP3]	..((.((((((((((((.((((&)))).))))))))))))-))..	GAUGUCCUUGCAUUCCAUGGAA&UUCCUUGGAAUGUAAGG-CGGA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN5010_c0_g1_1133_TPlot.pdf
TRINITY_DN5010_c0_g1:1134	si_a511	TRINITY_DN5010_c0_g1	1122	1143	1134	-38.40	-27.30	0.7109375	5	1-5,1143-1139;7-18,1137-1126;19-20,1124-1123	6-6,1138-1138[SIL];x-x,1125-1125[BULt];21-21,1122-1122[UP3]	.((.((((((((((((.(((((&))))).))))))))))))-)).	AUGUCCUUGCAUUCCAUGGAAG&CUUCCUUGGAAUGUAAGG-CGG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN5010_c0_g1_1134_TPlot.pdf
TRINITY_DN5010_c0_g1:1136	si_a509	TRINITY_DN5010_c0_g1	1125	1145	1136	-37.30	-26.70	0.715817694369973	6.5	3-7,1143-1139;9-20,1137-1126	1-2,1145-1144[UP5];8-8,1138-1138[SIL];21-21,1125-1125[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UCCUUGCAUUCCAUGGAAGUG&GUCUUCCUUGGAAUGUAAGGC	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN5010_c0_g1_1136_TPlot.pdf
TRINITY_DN5010_c0_g1:1137	si_a508	TRINITY_DN5010_c0_g1	1126	1145	1137	-36.30	-27.50	0.757575757575758	5.5	1-2,1145-1144;4-8,1143-1139;10-21,1137-1126	3-3,x-x[BULq];9-9,1138-1138[SIL]	((((((((((((.(((((-((&)).))))).))))))))))))	CCUUGCAUUCCAUGGAAG-UG&CGUCUUCCUUGGAAUGUAAGG	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN5010_c0_g1_1137_TPlot.pdf
TRINITY_DN5010_c0_g1:1138	si_a507	TRINITY_DN5010_c0_g1	1127	1146	1138	-34.90	-24.60	0.70487106017192	6	1-3,1146-1144;5-9,1143-1139;11-21,1137-1127	4-4,x-x[BULq];10-10,1138-1138[SIL]	(((((((((((.(((((-(((&))).))))).)))))))))))	CUUGCAUUCCAUGGAAG-UGG&UCGUCUUCCUUGGAAUGUAAG	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN5010_c0_g1_1138_TPlot.pdf
TRINITY_DN5010_c0_g1:1139	si_a506	TRINITY_DN5010_c0_g1	1128	1147	1139	-33.40	-22.00	0.658682634730539	7.5	2-4,1146-1144;6-10,1143-1139;12-21,1137-1128	1-1,1147-1147[UP5];5-5,x-x[BULq];11-11,1138-1138[SIL]	((((((((((.(((((-(((.&.))).))))).))))))))))	UUGCAUUCCAUGGAAG-UGGU&UUCGUCUUCCUUGGAAUGUAA	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN5010_c0_g1_1139_TPlot.pdf
TRINITY_DN5010_c0_g1:1532	si_a709	TRINITY_DN5010_c0_g1	1519	1541	1532	-26.60	-18.00	0.676691729323308	4.5	2-16,1540-1526;17-20,1523-1520	1-1,1541-1541[UP5];x-x,1525-1524[BULt];21-21,1519-1519[UP3]	.((((..(((((((((((((((.&.)))))))))))))))--)))).	AAAUGUAAUUAUUUUGGAAUGUU&UACAUUCCAAAAUAAU--CGUUA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN5010_c0_g1_1532_TPlot.pdf
TRINITY_DN5011_c0_g1:2385	si_a69	TRINITY_DN5011_c0_g1	2374	2394	2385	-24.00	-18.00	0.75	8.5	1-7,2394-2388;10-19,2385-2376	8-9,2387-2386[SIL];20-21,2375-2374[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	GAGAAAGACGAUGAGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5011_c0_g1_2385_TPlot.pdf
TRINITY_DN5011_c0_g1:4580	si_s72	TRINITY_DN5011_c0_g1	4568	4589	4580	-24.10	-15.80	0.655601659751037	9	1-12,4589-4578;13-18,4576-4571	x-x,4577-4577[BULt];19-21,4570-4568[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	AACGAGAGAUGAAGAAAUGGAG&UUCUAUUUUUUU-UCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5011_c0_g1_4580_TPlot.pdf
TRINITY_DN5011_c0_g1:4581	si_a551	TRINITY_DN5011_c0_g1	4570	4590	4581	-31.60	-21.30	0.674050632911392	7.5	3-18,4588-4573	1-2,4590-4589[UP5];19-21,4572-4570[UP3]	...((((((((((((((((..&..))))))))))))))))...	CGAGAGAUGAAGAAAUGGAGG&AAUCUAUUUCUUUAUCUCCCC	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN5011_c0_g1_4581_TPlot.pdf
TRINITY_DN5011_c0_g1:4582	si_a550	TRINITY_DN5011_c0_g1	4571	4591	4582	-30.90	-21.30	0.689320388349515	8.5	4-19,4588-4573	1-3,4591-4589[UP5];20-21,4572-4571[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAGAGAUGAAGAAAUGGAGGA&CAAUCUAUUUCUUUAUCUCCC	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN5011_c0_g1_4582_TPlot.pdf
TRINITY_DN5011_c0_g1:4584	si_a548	TRINITY_DN5011_c0_g1	4573	4592	4584	-27.20	-22.70	0.834558823529412	5.5	1-3,4592-4590;6-21,4588-4573	4-5,4589-4589[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	GAGAUGAAGAAAUGGAG-GAA&UUCAAUCUAUUUCUUUAUCUC	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN5011_c0_g1_4584_TPlot.pdf
TRINITY_DN5011_c0_g1:4585	si_a547	TRINITY_DN5011_c0_g1	4574	4593	4585	-26.90	-19.50	0.724907063197026	6.5	2-4,4592-4590;7-21,4588-4574	1-1,4593-4593[UP5];5-6,4589-4589[AILq]	(((((((((((((((.-(((.&.)))..)))))))))))))))	AGAUGAAGAAAUGGAG-GAAA&GUUCAAUCUAUUUCUUUAUCU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN5011_c0_g1_4585_TPlot.pdf
TRINITY_DN50123_c0_g1:96	si_s121	TRINITY_DN50123_c0_g1	85	103	96	-27.00	-17.60	0.651851851851852	7.5	1-6,103-98;9-18,97-88	7-8,x-x[BULq];19-21,87-85[UP3]	...((((((((((--((((((&))))))..))))))))))...	UCACAGCUCUUCU--UUUUCU&AGAAAAAUAGAAGAGUUGAAU	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN50123_c0_g1_96_TPlot.pdf
TRINITY_DN50124_c0_g1:112	si_s773	TRINITY_DN50124_c0_g1	101	121	112	-23.10	-15.40	0.666666666666667	11	4-17,118-105	1-3,121-119[UP5];18-21,104-101[UP3]	....((((((((((((((...&...))))))))))))))....	CAACAUGGUAGUAGUAAUGCA&UUAAUUACUAUUGCUAUAAAA	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN50124_c0_g1_112_TPlot.pdf
TRINITY_DN50124_c0_g1:151	si_s892	TRINITY_DN50124_c0_g1	140	160	151	-29.50	-21.90	0.742372881355932	12.5	6-19,155-142	1-5,160-156[UP5];20-21,141-140[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAUGAAGGGGAAGCCUUGAAA&UAAAUAGGCUUUCUCUUCAAU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN50124_c0_g1_151_TPlot.pdf
TRINITY_DN50137_c0_g1:204	si_s433	TRINITY_DN50137_c0_g1	193	212	204	-21.10	-14.10	0.66824644549763	7.5	2-6,211-207;10-21,204-193	1-1,212-212[UP5];7-9,206-205[AILq]	((((((((((((..-(((((.&.)))))...))))))))))))	GUAUAAUAUGUAUA-AUUGUA&AACAAUAAUUACAUAUUAUAU	0	0.143235147696512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN50137_c0_g1_204_TPlot.pdf
TRINITY_DN50155_c0_g1:80	si_a79	TRINITY_DN50155_c0_g1	69	90	80	-22.20	-14.80	0.666666666666667	10	3-9,88-82;10-18,80-72	1-2,90-89[UP5];x-x,81-81[BULt];19-21,71-69[UP3]	...(((((((((.(((((((..&..)))))))-)))))))))...	UACCUUAAUAGUCGAAGAACUC&UUGUUUUUC-AUUAUUAAGAAA	4	0.999999891781442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN50155_c0_g1_80_TPlot.pdf
TRINITY_DN50155_c0_g1:84	si_a76	TRINITY_DN50155_c0_g1	72	93	84	-21.20	-14.00	0.660377358490566	12.5	6-12,88-82;13-21,80-72	1-5,93-89[UP5];x-x,81-81[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	CUUAAUAGUCGAAGAACUCAAA&AAAUUGUUUUUC-AUUAUUAAG	3	0.999999999997467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN50155_c0_g1_84_TPlot.pdf
TRINITY_DN5015_c0_g1:326	si_s79	TRINITY_DN5015_c0_g1	314	335	326	-26.20	-18.80	0.717557251908397	7	1-8,335-328;10-12,326-324;13-21,322-314	9-9,327-327[SIL];x-x,323-323[BULt]	(((((((((.(((.((((((((&)))))))).)))-)))))))))	AAGAGGGAAUGGACAGAAAGGA&UUUUUUCUUUCC-UUUCUUCUU	2	0.999999999998617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5015_c0_g1_326_TPlot.pdf
TRINITY_DN5015_c0_g1:327	si_s78	TRINITY_DN5015_c0_g1	315	336	327	-26.20	-18.10	0.690839694656489	7	2-9,335-328;11-13,326-324;14-21,322-315	1-1,336-336[UP5];10-10,327-327[SIL];x-x,323-323[BULt]	((((((((.(((.((((((((.&.)))))))).)))-))))))))	AGAGGGAAUGGACAGAAAGGAU&UUUUUUUCUUUCC-UUUCUUCU	0	0.795756644121223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5015_c0_g1_327_TPlot.pdf
TRINITY_DN5015_c0_g1:328	si_s77	TRINITY_DN5015_c0_g1	316	337	328	-25.50	-16.80	0.658823529411765	9	3-10,335-328;12-14,326-324;15-21,322-316	1-2,337-336[UP5];11-11,327-327[SIL];x-x,323-323[BULt]	(((((((.(((.((((((((..&..)))))))).)))-)))))))	GAGGGAAUGGACAGAAAGGAUU&UUUUUUUUCUUUCC-UUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5015_c0_g1_328_TPlot.pdf
TRINITY_DN5015_c0_g1:73	si_s46	TRINITY_DN5015_c0_g1	62	81	73	-25.00	-16.50	0.66	6	1-5,81-77;7-21,76-62	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	UAAUUUGAGAUUCAG-UGUUA&UAAUAAUUGGAUUUCAAGUUA	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN5015_c0_g1_73_TPlot.pdf
TRINITY_DN5015_c0_g1:846	si_s72	TRINITY_DN5015_c0_g1	835	855	846	-24.10	-15.70	0.651452282157676	7.5	2-13,854-843;15-19,841-837	1-1,855-855[UP5];14-14,842-842[SIL];20-21,836-835[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	CUGGAGGAGAAAAAGGUAGAG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5015_c0_g1_846_TPlot.pdf
TRINITY_DN5015_c0_g1:857	si_a785	TRINITY_DN5015_c0_g1	846	870	857	-25.90	-16.98	0.655598455598456	15	1-9,870-862;11-20,856-847	10-10,861-857[AILt];21-21,846-846[UP3]	.((((((((((.....(((((((((&)))))))))----.)))))))))).	AAAGGUAGAGAUACUUGUAGAGGAG&CUCUUCUAU----UUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5015_c0_g1_857_TPlot.pdf
TRINITY_DN5015_c0_g1:863	si_a783	TRINITY_DN5015_c0_g1	848	872	863	-24.70	-16.08	0.651012145748988	16.5	3-11,870-862;13-21,856-848	1-2,872-871[UP5];12-12,861-857[AILt]	(((((((((.....(((((((((..&..)))))))))----.)))))))))	AGGUAGAGAUACUUGUAGAGGAGAU&AACUCUUCUAU----UUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5015_c0_g1_863_TPlot.pdf
TRINITY_DN5016_c0_g1:3852	si_s128	TRINITY_DN5016_c0_g1	3841	3861	3852	-29.80	-19.80	0.664429530201342	12.5	6-20,3856-3842	1-5,3861-3857[UP5];21-21,3841-3841[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUGGUUGAUUCAGCUUCGUAA&UAGAAGAGUUGAAUCAAUCAA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s128_TRINITY_DN5016_c0_g1_3852_TPlot.pdf
TRINITY_DN5016_c0_g1:3894	si_s695	TRINITY_DN5016_c0_g1	3883	3903	3894	-24.70	-19.50	0.789473684210526	4.5	2-15,3902-3889;17-20,3887-3884	1-1,3903-3903[UP5];16-16,3888-3888[SIL];21-21,3883-3883[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	UCUGAGAAAUCGACUAGUUAG&UUAAUUAGUCGAUUUAUUAGU	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN5016_c0_g1_3894_TPlot.pdf
TRINITY_DN5017_c0_g1:2109	si_s696	TRINITY_DN5017_c0_g1	2098	2119	2109	-26.30	-17.50	0.665399239543726	7	1-8,2119-2112;9-16,2110-2103;19-21,2100-2098	x-x,2111-2111[BULt];17-18,2102-2101[SIL]	(((..((((((((.((((((((&))))))))-))))))))..)))	CACACGUAAAUCGUACUGGUUG&UAAUUAGU-CGAUUUAUUAGUG	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN5017_c0_g1_2109_TPlot.pdf
TRINITY_DN5017_c0_g1:2113	si_s693	TRINITY_DN5017_c0_g1	2101	2122	2113	-23.90	-17.60	0.736401673640168	9	1-11,2122-2112;12-19,2110-2103	x-x,2111-2111[BULt];20-21,2102-2101[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	ACGUAAAUCGUACUGGUUGGAU&GUUUAAUUAGU-CGAUUUAUUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN5017_c0_g1_2113_TPlot.pdf
TRINITY_DN5017_c0_g1:2229	si_s191	TRINITY_DN5017_c0_g1	2218	2237	2229	-26.60	-18.40	0.691729323308271	10	4-8,2234-2230;10-20,2229-2219	1-3,2237-2235[UP5];9-9,x-x[BULq];21-21,2218-2218[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	AACAUUCCAAGA-GAUCGCAU&UAACGAUUAUUUUGGAAUGUA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN5017_c0_g1_2229_TPlot.pdf
TRINITY_DN5017_c0_g1:2648	si_s68	TRINITY_DN5017_c0_g1	2637	2658	2648	-23.10	-17.40	0.753246753246753	6.5	1-6,2658-2653;8-21,2650-2637	7-7,2652-2651[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	GAAGAGAGAGAAUAUAAAGUUG&CAACUU-CUAUUUUUUUUCUUU	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5017_c0_g1_2648_TPlot.pdf
TRINITY_DN5018_c0_g1:3469	si_a127	TRINITY_DN5018_c0_g1	3457	3478	3469	-23.10	-16.00	0.692640692640693	8.5	3-14,3476-3465;15-19,3463-3459	1-2,3478-3477[UP5];x-x,3464-3464[BULt];20-21,3458-3457[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	UAAAUUGCCUAUUGCUAUGGUA&UUUUAUAGCAAUAG-UAAUUAA	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN5018_c0_g1_3469_TPlot.pdf
TRINITY_DN5018_c0_g1:3471	si_a125	TRINITY_DN5018_c0_g1	3459	3481	3471	-25.00	-18.60	0.744	6.5	1-4,3481-3478;5-16,3476-3465;17-21,3463-3459	x-x,3477-3477[BULt];x-x,3464-3464[BULt]	(((((.((((((((((((.((((&))))-))))))))))))-)))))	AAUUGCCUAUUGCUAUGGUAGCA&UGUU-UUAUAGCAAUAG-UAAUU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN5018_c0_g1_3471_TPlot.pdf
TRINITY_DN50194_c0_g1:1629	si_s311	TRINITY_DN50194_c0_g1	1617	1638	1629	-30.60	-21.30	0.696078431372549	11	6-14,1633-1625;15-21,1623-1617	1-5,1638-1634[UP5];x-x,1624-1624[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	AGCAAGAUGGGACAGAAAAUAC&GAAAAUUCUGUCCU-UCUUGUU	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN50194_c0_g1_1629_TPlot.pdf
TRINITY_DN5019_c1_g1:47	si_a408	TRINITY_DN5019_c1_g1	38	56	47	-20.10	-14.00	0.696517412935323	5	2-13,55-44;16-21,43-38	1-1,56-56[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	UAUUUA--UGUAAACAGAACG&UGUUUUGUUUAUAUUUAAAUA	4	0.999999469608976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5019_c1_g1_47_TPlot.pdf
TRINITY_DN5019_c1_g1:48	si_a407	TRINITY_DN5019_c1_g1	37	57	48	-19.80	-13.70	0.691919191919192	9.5	2-15,56-43	1-1,57-57[UP5];16-21,42-37[UP3]	......((((((((((((((.&.))))))))))))))......	AUAUUUAUGUAAACAGAACGG&UUGUUUUGUUUAUAUUUAAAU	3	0.99999999998912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5019_c1_g1_48_TPlot.pdf
TRINITY_DN5019_c1_g1:49	si_a406	TRINITY_DN5019_c1_g1	38	58	49	-19.80	-13.70	0.691919191919192	10.5	3-16,56-43	1-2,58-57[UP5];17-21,42-38[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUUUAUGUAAACAGAACGGA&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999999839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5019_c1_g1_49_TPlot.pdf
TRINITY_DN501_c0_g1:1142	si_s803	TRINITY_DN501_c0_g1	1130	1151	1142	-26.00	-17.00	0.653846153846154	14	7-15,1145-1137;16-21,1135-1130	1-6,1151-1146[UP5];x-x,1136-1136[BULt]	((((((.(((((((((......&......)))))))))-))))))	GGAGGGAUAGCGAAGAAUGUUG&AUUUUAUCUUCGUUA-CCUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN501_c0_g1_1142_TPlot.pdf
TRINITY_DN501_c0_g1:587	si_a431	TRINITY_DN501_c0_g1	576	596	587	-34.50	-24.20	0.701449275362319	7	1-17,596-580	18-21,579-576[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUGGAUCCGAUGGAUCUUAUG&UAUAGGAUCCGUUGGAUAUGA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN501_c0_g1_587_TPlot.pdf
TRINITY_DN501_c0_g1:592	si_a426	TRINITY_DN501_c0_g1	581	601	592	-31.80	-22.60	0.710691823899371	12	6-21,596-581	1-5,601-597[UP5]	((((((((((((((((.....&.....))))))))))))))))	UCCGAUGGAUCUUAUGGAAUG&AUAAAUAUAGGAUCCGUUGGA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN501_c0_g1_592_TPlot.pdf
TRINITY_DN501_c0_g1:697	si_s76	TRINITY_DN501_c0_g1	686	706	697	-23.60	-15.70	0.665254237288135	7.5	2-13,705-694;15-20,692-687	1-1,706-706[UP5];14-14,693-693[SIL];21-21,686-686[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	CAGAAGGAAAAGAGAGGAGAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN501_c0_g1_697_TPlot.pdf
TRINITY_DN501_c0_g1:698	si_s84	TRINITY_DN501_c0_g1	687	707	698	-32.30	-21.10	0.653250773993808	7.5	3-13,705-695;15-20,693-688	1-2,707-706[UP5];14-14,694-694[SIL];21-21,687-687[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	AGAAGGAAAAGAGAGGAGAAU&UCUUUCCUUUCUUCUUCUUCG	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN501_c0_g1_698_TPlot.pdf
TRINITY_DN501_c0_g1:699	si_s83	TRINITY_DN501_c0_g1	688	708	699	-30.90	-20.70	0.669902912621359	8.5	4-14,705-695;16-21,693-688	1-3,708-706[UP5];15-15,694-694[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GAAGGAAAAGAGAGGAGAAUU&UUCUUUCCUUUCUUCUUCUUC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN501_c0_g1_699_TPlot.pdf
TRINITY_DN501_c0_g1:703	si_s72	TRINITY_DN501_c0_g1	689	712	703	-24.10	-16.60	0.688796680497925	10.5	1-5,712-708;7-16,706-697;17-21,693-689	6-6,707-707[SIL];x-x,696-694[BULt]	(((((...((((((((((.(((((&))))).))))))))))---)))))	AAGGAAAAGAGAGGAGAAUUGGGA&UUCUAUUUUUUUUCUU---UCCUU	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN501_c0_g1_703_TPlot.pdf
TRINITY_DN501_c0_g1:984	si_s155	TRINITY_DN501_c0_g1	973	993	984	-42.00	-28.00	0.666666666666667	10	4-4,990-990;6-12,988-982;14-20,980-974	1-3,993-991[UP5];5-5,989-989[SIL];13-13,981-981[SIL];21-21,973-973[UP3]	.(((((((.(((((((.(...&...).))))))).))))))).	ACCUGGCCCUGAACCUGUAGA&AAAGGAGGUUCAUGGCCAGGG	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN501_c0_g1_984_TPlot.pdf
TRINITY_DN501_c1_g1:2850	si_a411	TRINITY_DN501_c1_g1	2839	2859	2850	-17.90	-11.80	0.659217877094972	6.5	1-11,2859-2849;14-18,2846-2842	12-13,2848-2847[SIL];19-21,2841-2839[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	CGAUGUUUCUAUAUAAACAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.999999735906632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN501_c1_g1_2850_TPlot.pdf
TRINITY_DN501_c1_g1:2851	si_a410	TRINITY_DN501_c1_g1	2840	2860	2851	-17.80	-12.50	0.702247191011236	4.5	1-12,2860-2849;15-19,2846-2842	13-14,2848-2847[SIL];20-21,2841-2840[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	GAUGUUUCUAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999903646668128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN501_c1_g1_2851_TPlot.pdf
TRINITY_DN501_c1_g1:2852	si_a409	TRINITY_DN501_c1_g1	2841	2861	2852	-19.50	-14.10	0.723076923076923	4	1-13,2861-2849;16-20,2846-2842	14-15,2848-2847[SIL];21-21,2841-2841[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	AUGUUUCUAUAUAAACAAAAU&GUUUUGUUUAUAUUUAAAUAA	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN501_c1_g1_2852_TPlot.pdf
TRINITY_DN501_c1_g1:2854	si_a407	TRINITY_DN501_c1_g1	2843	2863	2854	-19.80	-14.70	0.742424242424242	3.5	1-15,2863-2849;18-21,2846-2843	16-17,2848-2847[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	GUUUCUAUAUAAACAAAAUAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN501_c1_g1_2854_TPlot.pdf
TRINITY_DN501_c1_g1:2855	si_a406	TRINITY_DN501_c1_g1	2844	2864	2855	-19.80	-13.40	0.676767676767677	4	2-16,2863-2849;19-21,2846-2844	1-1,2864-2864[UP5];17-18,2848-2847[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	UUUCUAUAUAAACAAAAUAAA&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999985999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN501_c1_g1_2855_TPlot.pdf
TRINITY_DN501_c1_g1:2856	si_a405	TRINITY_DN501_c1_g1	2845	2865	2856	-19.80	-13.10	0.661616161616162	8	3-17,2863-2849	1-2,2865-2864[UP5];18-21,2848-2845[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUCUAUAUAAACAAAAUAAAU&AAUUGUUUUGUUUAUAUUUAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN501_c1_g1_2856_TPlot.pdf
TRINITY_DN501_c1_g1:2940	si_a204	TRINITY_DN501_c1_g1	2929	2949	2940	-26.30	-17.20	0.653992395437262	5.5	1-13,2949-2937;15-18,2935-2932	14-14,2936-2936[SIL];19-21,2931-2929[UP3]	...((((.(((((((((((((&))))))))))))).))))...	UGUUUAGCUGAUUUAUUGGUG&CACUAAUAAAUCGACUAAUUA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN501_c1_g1_2940_TPlot.pdf
TRINITY_DN5021_c0_g1:1618	si_a73	TRINITY_DN5021_c0_g1	1607	1628	1618	-21.90	-15.12	0.69041095890411	11	1-5,1628-1624;9-21,1619-1607	6-8,1623-1620[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	GAUAGUGAAAGAUUUAGUUGAA&UUCAA-AUUGUUUUUCAUUAUU	2	0.999950798213283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN5021_c0_g1_1618_TPlot.pdf
TRINITY_DN5021_c0_g1:1624	si_s27	TRINITY_DN5021_c0_g1	1613	1633	1624	-27.00	-18.40	0.681481481481481	4	1-6,1633-1628;8-20,1626-1614	7-7,1627-1627[SIL];21-21,1613-1613[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	GAAAGAUUUAGUUGAAAUUAA&UUGAUUGCAACUAAAUCUUUA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN5021_c0_g1_1624_TPlot.pdf
TRINITY_DN50234_c0_g1:29	si_s377	TRINITY_DN50234_c0_g1	18	38	29	-44.10	-29.00	0.657596371882086	8.5	1-2,38-37;4-10,35-29;12-19,27-20	3-3,36-36[SIL];11-11,28-28[SIL];20-21,19-18[UP3]	..((((((((.(((((((.((&)).))))))).))))))))..	UGGGGGUGGAAACGCGGGGGA&UCGCUCGCGUGUCCGCCUUAC	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN50234_c0_g1_29_TPlot.pdf
TRINITY_DN50234_c0_g1:30	si_s376	TRINITY_DN50234_c0_g1	19	39	30	-42.50	-29.00	0.682352941176471	8.5	2-3,38-37;5-11,35-29;13-20,27-20	1-1,39-39[UP5];4-4,36-36[SIL];12-12,28-28[SIL];21-21,19-19[UP3]	.((((((((.(((((((.((.&.)).))))))).)))))))).	GGGGGUGGAAACGCGGGGGAG&AUCGCUCGCGUGUCCGCCUUA	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN50234_c0_g1_30_TPlot.pdf
TRINITY_DN50234_c0_g1:321	si_a761	TRINITY_DN50234_c0_g1	310	330	321	-30.10	-19.90	0.661129568106312	9	1-4,330-327;6-13,325-318;15-18,316-313	5-5,326-326[SIL];14-14,317-317[SIL];19-21,312-310[UP3]	...((((.((((((((.((((&)))).)))))))).))))...	CAGCAAUGAGGGACCCCAAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.999999998667136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN50234_c0_g1_321_TPlot.pdf
TRINITY_DN50234_c0_g1:325	si_a757	TRINITY_DN50234_c0_g1	314	334	325	-33.10	-24.90	0.75226586102719	5.5	2-8,333-327;10-17,325-318;19-21,316-314	1-1,334-334[UP5];9-9,326-326[SIL];18-18,317-317[SIL]	(((.((((((((.(((((((.&.))))))).)))))))).)))	AAUGAGGGACCCCAAGGAGGG&ACCUCCUUUGGGUUUUUGAUU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN50234_c0_g1_325_TPlot.pdf
TRINITY_DN50234_c0_g1:326	si_a756	TRINITY_DN50234_c0_g1	315	335	326	-33.10	-24.10	0.72809667673716	7.5	3-9,333-327;11-18,325-318;20-21,316-315	1-2,335-334[UP5];10-10,326-326[SIL];19-19,317-317[SIL]	((.((((((((.(((((((..&..))))))).)))))))).))	AUGAGGGACCCCAAGGAGGGG&AACCUCCUUUGGGUUUUUGAU	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN50234_c0_g1_326_TPlot.pdf
TRINITY_DN50234_c0_g1:328	si_a754	TRINITY_DN50234_c0_g1	317	337	328	-34.60	-22.80	0.658959537572254	11.5	5-11,333-327;13-20,325-318	1-4,337-334[UP5];12-12,326-326[SIL];21-21,317-317[UP3]	.((((((((.(((((((....&....))))))).)))))))).	GAGGGACCCCAAGGAGGGGGA&UGAACCUCCUUUGGGUUUUUG	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN50234_c0_g1_328_TPlot.pdf
TRINITY_DN50234_c0_g1:36	si_a788	TRINITY_DN50234_c0_g1	23	45	36	-24.80	-16.28	0.656451612903226	13	2-12,44-34;15-20,29-24	1-1,45-45[UP5];13-14,33-30[AILt];21-21,23-23[UP3]	.((((((....(((((((((((.&.)))))))))))--..)))))).	GUGGAAACGCGGGGGAGAUGGAU&UUCUAUUUUUCU--AUUUUCCAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN50234_c0_g1_36_TPlot.pdf
TRINITY_DN50234_c0_g1:42	si_a554	TRINITY_DN50234_c0_g1	30	51	42	-34.40	-22.98	0.668023255813953	9.5	1-4,51-48;8-18,44-34;19-21,32-30	5-7,47-45[SIL];x-x,33-33[BULt]	(((.(((((((((((...((((&))))...)))))))))))-)))	CGCGGGGGAGAUGGAUAUAUAG&CUAUUUCUUUAUCUCCCC-GUG	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN50234_c0_g1_42_TPlot.pdf
TRINITY_DN50234_c0_g1:46	si_a786	TRINITY_DN50234_c0_g1	35	55	46	-26.60	-18.28	0.687218045112782	10.5	2-8,54-48;12-21,44-35	1-1,55-55[UP5];9-11,47-45[SIL]	((((((((((...(((((((.&.)))))))...))))))))))	GGGAGAUGGAUAUAUAGGGGU&UCUUCUAUUUUUCUAUUUUCC	2	0.999997359191917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN50234_c0_g1_46_TPlot.pdf
TRINITY_DN50234_c0_g1:796	si_a455	TRINITY_DN50234_c0_g1	784	805	796	-21.10	-14.20	0.672985781990521	10	4-14,802-792;15-19,790-786	1-3,805-803[UP5];x-x,791-791[BULt];20-21,785-784[UP3]	..(((((.(((((((((((...&...)))))))))))-)))))..	UGGUUAUGGUGUAACAACAUUU&AAUUGUUGUUAUAU-AUAAUAU	4	0.999999458546671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN50234_c0_g1_796_TPlot.pdf
TRINITY_DN5023_c0_g1:2793	si_s76	TRINITY_DN5023_c0_g1	2782	2802	2793	-23.60	-15.50	0.656779661016949	10	4-12,2799-2791;14-19,2789-2784	1-3,2802-2800[UP5];13-13,2790-2790[SIL];20-21,2783-2782[UP3]	..((((((.(((((((((...&...))))))))).))))))..	GCGAAAGGUAAGAAGGAACAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5023_c0_g1_2793_TPlot.pdf
TRINITY_DN5023_c0_g1:3554	si_s76	TRINITY_DN5023_c0_g1	3542	3564	3554	-23.60	-15.80	0.669491525423729	10.5	2-8,3563-3557;9-14,3555-3550;15-21,3548-3542	1-1,3564-3564[UP5];x-x,3556-3556[BULt];x-x,3549-3549[BULt]	(((((((.((((((.(((((((.&.)))))))-))))))-)))))))	GAGAAAGUGAGGGACGAGGAGAA&AUUUUUUU-UCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5023_c0_g1_3554_TPlot.pdf
TRINITY_DN5023_c0_g1:3969	si_a68	TRINITY_DN5023_c0_g1	3958	3978	3969	-25.40	-16.86	0.663779527559055	12	1-8,3978-3971;13-20,3966-3959	9-12,3970-3967[SIL];21-21,3958-3958[UP3]	.((((((((....((((((((&))))))))....)))))))).	AGAAAAGCGUAGAGAGAGGAG&CUUCUUUCAAAUUGUUUUUCA	3	0.99999999999885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5023_c0_g1_3969_TPlot.pdf
TRINITY_DN5023_c0_g1:6660	si_a641	TRINITY_DN5023_c0_g1	6650	6669	6660	-23.60	-16.70	0.707627118644068	6.5	2-17,6668-6653;19-20,6652-6651	1-1,6669-6669[UP5];18-18,x-x[BULq];21-21,6650-6650[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	UGA-AUGUUGCUCGAAAGAAC&AUUUUUUUGAGUAAUAUAUCG	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN5023_c0_g1_6660_TPlot.pdf
TRINITY_DN5023_c0_g1:6661	si_a640	TRINITY_DN5023_c0_g1	6650	6670	6661	-24.10	-16.20	0.672199170124481	9	3-18,6668-6653	1-2,6670-6669[UP5];19-21,6652-6650[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGAAUGUUGCUCGAAAGAACA&GAUUUUUUUGAGUAAUAUAUC	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN5023_c0_g1_6661_TPlot.pdf
TRINITY_DN5023_c0_g1:6663	si_a638	TRINITY_DN5023_c0_g1	6652	6672	6663	-24.40	-16.20	0.663934426229508	11	5-20,6668-6653	1-4,6672-6669[UP5];21-21,6652-6652[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUGUUGCUCGAAAGAACAGU&UCGAUUUUUUUGAGUAAUAUA	3	0.999998927568074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN5023_c0_g1_6663_TPlot.pdf
TRINITY_DN50268_c0_g1:340	si_s73	TRINITY_DN50268_c0_g1	326	349	340	-24.00	-16.20	0.675	10	2-15,348-335;16-18,331-329	1-1,349-349[UP5];x-x,334-332[BULt];19-21,328-326[UP3]	...(((...((((((((((((((.&.))))))))))))))---)))...	AGUGGAAAAAAGAAAAGAGAUGGG&UCUAUUUUUUUUCUU---UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN50268_c0_g1_340_TPlot.pdf
TRINITY_DN50276_c0_g1:266	si_a603	TRINITY_DN50276_c0_g1	255	275	266	-29.80	-20.80	0.697986577181208	4.5	2-17,274-259;19-20,257-256	1-1,275-275[UP5];18-18,258-258[SIL];21-21,255-255[UP3]	.((.((((((((((((((((.&.)))))))))))))))).)).	GUGCUUGGAAUUGUGAAAAUG&AAUUUUCGCAAUUCCAAUCGA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN50276_c0_g1_266_TPlot.pdf
TRINITY_DN50276_c0_g1:316	si_s12	TRINITY_DN50276_c0_g1	306	325	316	-22.80	-15.70	0.68859649122807	5.5	2-12,324-314;14-20,313-307	1-1,325-325[UP5];13-13,x-x[BULq];21-21,306-306[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	UGUCAAUA-AGUAAUAGUGAU&CUUAUUAUUACUAUAUUGAUU	0	0.133319559618814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN50276_c0_g1_316_TPlot.pdf
TRINITY_DN50285_c0_g1:369	si_s183	TRINITY_DN50285_c0_g1	358	382	369	-32.40	-22.10	0.682098765432099	13	2-5,381-378;6-19,373-360	1-1,382-382[UP5];x-x,377-374[BULt];20-21,359-358[UP3]	..((((((((((((((....((((.&.))))----))))))))))))))..	GUGGUAGUUGUUACUCAGAAGGGCC&UGCCC----GAGUAACGAUUAUUUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN50285_c0_g1_369_TPlot.pdf
TRINITY_DN5028_c0_g1:1084	si_a627	TRINITY_DN5028_c0_g1	1073	1090	1084	-29.50	-19.50	0.661016949152542	12.5	1-7,1090-1084;11-17,1083-1077	8-10,x-x[BULq];18-21,1076-1073[UP3]	....(((((((---(((((((&)))))))...)))))))....	GUCCGAUCGAC---GUGCGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.999998071001669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5028_c0_g1_1084_TPlot.pdf
TRINITY_DN5029_c0_g2:338	si_s82	TRINITY_DN5029_c0_g2	326	347	338	-28.90	-19.70	0.681660899653979	8.5	1-10,347-338;13-15,335-333;16-20,331-327	11-12,337-336[SIL];x-x,332-332[BULt];21-21,326-326[UP3]	.(((((.(((..((((((((((&))))))))))..)))-))))).	UAGAAGCAAGUCGGGAGAGAAG&UUUCUUUCCUUUCUU-CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5029_c0_g2_338_TPlot.pdf
TRINITY_DN5029_c0_g2:340	si_s80	TRINITY_DN5029_c0_g2	328	349	340	-28.20	-19.10	0.677304964539007	8	2-12,348-338;15-17,335-333;18-21,331-328	1-1,349-349[UP5];13-14,337-336[SIL];x-x,332-332[BULt]	((((.(((..(((((((((((.&.)))))))))))..)))-))))	GAAGCAAGUCGGGAGAGAAGGU&UUUUUCUUUCCUUUCUU-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5029_c0_g2_340_TPlot.pdf
TRINITY_DN5029_c0_g2:376	si_s70	TRINITY_DN5029_c0_g2	365	384	376	-25.80	-17.30	0.670542635658915	6	2-6,383-379;8-20,378-366	1-1,384-384[UP5];7-7,x-x[BULq];21-21,365-365[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	AGGAAGAGAAAAGA-AGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5029_c0_g2_376_TPlot.pdf
TRINITY_DN502_c0_g1:3103	si_s808	TRINITY_DN502_c0_g1	3092	3114	3103	-28.60	-18.88	0.66013986013986	12	1-7,3114-3108;10-19,3103-3094	8-9,3107-3104[AILt];20-21,3093-3092[UP3]	..((((((((((....(((((((&)))))))--..))))))))))..	UCAAGGGAAGGUUCACCGAGGAU&AUCUUCG--UUACCUUUUCUUAA	4	0.999999999995242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN502_c0_g1_3103_TPlot.pdf
TRINITY_DN50301_c0_g1:1530	si_a668	TRINITY_DN50301_c0_g1	1519	1539	1530	-33.20	-21.70	0.653614457831325	10	2-16,1538-1524	1-1,1539-1539[UP5];17-21,1523-1519[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUACCUAAGGAGUCGGUGGGG&GCCUAUUGAUUCCUUAUUCAC	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN50301_c0_g1_1530_TPlot.pdf
TRINITY_DN50301_c0_g1:1635	si_a144	TRINITY_DN50301_c0_g1	1624	1653	1635	-27.40	-17.90	0.653284671532847	21	1-6,1653-1648;7-9,1646-1644;10-21,1635-1624	x-x,1647-1647[BULt];x-x,1643-1636[BULt]	((((((((((((........(((.((((((&))))))-)))--------))))))))))))	CCUUGAGACAGCUCAAUUCGAACAGAUUGA&UUAAUC-GUU--------GUUGUUUUAAGG	2	0.99888131038216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN50301_c0_g1_1635_TPlot.pdf
TRINITY_DN50301_c0_g1:389	si_a760	TRINITY_DN50301_c0_g1	378	399	389	-31.10	-22.30	0.717041800643087	9.5	1-5,399-395;6-18,393-381	x-x,394-394[BULt];19-21,380-378[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	CGGAGUCGGAGGCCCGCAAGGA&UCCUU-UGGGUUUUUGAUUGAU	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN50301_c0_g1_389_TPlot.pdf
TRINITY_DN5030_c0_g1:325	si_s796	TRINITY_DN5030_c0_g1	313	335	325	-30.30	-20.40	0.673267326732673	9.5	2-6,334-330;7-12,328-323;14-21,320-313	1-1,335-335[UP5];x-x,329-329[BULt];13-13,322-321[AILt]	((((((((..((((((.(((((.&.)))))-))))))-.))))))))	AACGAAGGACGAGAUGCCGAGCG&AGCUCG-UAUUUU-AUCUUCGUU	2	0.998248943405107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN5030_c0_g1_325_TPlot.pdf
TRINITY_DN5031_c0_g2:518	si_s79	TRINITY_DN5031_c0_g2	501	527	518	-26.20	-17.60	0.67175572519084	8.5	1-14,527-514;15-17,512-510;18-21,504-501	x-x,513-513[BULt];x-x,509-505[BULt]	((((.....(((.((((((((((((((&))))))))))))))-)))-----))))	AGGACCCAUGGAUGAGGAGAGAAAAAA&UUUUUUCUUUCCUU-UCU-----UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5031_c0_g2_518_TPlot.pdf
TRINITY_DN5031_c0_g2:519	si_s78	TRINITY_DN5031_c0_g2	507	528	519	-26.20	-18.20	0.694656488549618	6	1-15,528-514;16-18,512-510	x-x,513-513[BULt];19-21,509-507[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	CAUGGAUGAGGAGAGAAAAAAA&UUUUUUUCUUUCCUU-UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5031_c0_g2_519_TPlot.pdf
TRINITY_DN5031_c0_g2:520	si_s77	TRINITY_DN5031_c0_g2	508	529	520	-25.50	-18.40	0.72156862745098	6	2-16,528-514;17-19,512-510	1-1,529-529[UP5];x-x,513-513[BULt];20-21,509-508[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	AUGGAUGAGGAGAGAAAAAAAU&UUUUUUUUCUUUCCUU-UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5031_c0_g2_520_TPlot.pdf
TRINITY_DN5031_c0_g2:521	si_s76	TRINITY_DN5031_c0_g2	509	530	521	-23.60	-18.40	0.779661016949152	7	3-17,528-514;18-20,512-510	1-2,530-529[UP5];x-x,513-513[BULt];21-21,509-509[UP3]	.(((.(((((((((((((((..&..)))))))))))))))-))).	UGGAUGAGGAGAGAAAAAAAUU&AUUUUUUUUCUUUCCUU-UCUU	3	0.999999999876506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5031_c0_g2_521_TPlot.pdf
TRINITY_DN5031_c0_g2:522	si_s75	TRINITY_DN5031_c0_g2	510	531	522	-24.00	-18.40	0.766666666666667	7.5	4-18,528-514;19-21,512-510	1-3,531-529[UP5];x-x,513-513[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	GGAUGAGGAGAGAAAAAAAUUU&UAUUUUUUUUCUUUCCUU-UCU	3	0.999999974655294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5031_c0_g2_522_TPlot.pdf
TRINITY_DN5031_c0_g2:523	si_s74	TRINITY_DN5031_c0_g2	511	532	523	-25.00	-17.30	0.692	9	5-19,528-514;20-21,512-511	1-4,532-529[UP5];x-x,513-513[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	GAUGAGGAGAGAAAAAAAUUUC&CUAUUUUUUUUCUUUCCUU-UC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5031_c0_g2_523_TPlot.pdf
TRINITY_DN5031_c0_g2:524	si_s73	TRINITY_DN5031_c0_g2	513	533	524	-24.00	-17.10	0.7125	11	6-20,528-514	1-5,533-529[UP5];21-21,513-513[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAGGAGAGAAAAAAAUUUCU&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5031_c0_g2_524_TPlot.pdf
TRINITY_DN5031_c0_g2:525	si_s72	TRINITY_DN5031_c0_g2	514	534	525	-24.10	-17.10	0.70954356846473	12	7-21,528-514	1-6,534-529[UP5]	(((((((((((((((......&......)))))))))))))))	GAGGAGAGAAAAAAAUUUCUU&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999827003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5031_c0_g2_525_TPlot.pdf
TRINITY_DN5031_c0_g2:526	si_s71	TRINITY_DN5031_c0_g2	515	538	526	-25.70	-19.00	0.739299610894942	12.5	1-4,538-535;8-21,528-515	5-7,534-529[AILt]	((((((((((((((......((((&))))---...))))))))))))))	AGGAGAGAAAAAAAUUUCUUGAAG&CUUC---UAUUUUUUUUCUUUCCU	2	0.99997118933767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5031_c0_g2_526_TPlot.pdf
TRINITY_DN5032_c0_g1:1973	si_a499	TRINITY_DN5032_c0_g1	1962	1982	1973	-35.20	-25.00	0.710227272727273	8.5	1-13,1982-1970;15-19,1968-1964	14-14,1969-1969[SIL];20-21,1963-1962[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AUGAGGAUGAUGAGGAGCGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5032_c0_g1_1973_TPlot.pdf
TRINITY_DN5032_c0_g1:1991	si_s684	TRINITY_DN5032_c0_g1	1980	2000	1991	-28.30	-19.50	0.68904593639576	9	5-13,1996-1988;15-21,1986-1980	1-4,2000-1997[UP5];14-14,1987-1987[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GGCUGAUCAAACUCAUGAUCG&GAAACAUGAGUUUAAUUAGUC	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN5032_c0_g1_1991_TPlot.pdf
TRINITY_DN5032_c0_g1:5537	si_s313	TRINITY_DN5032_c0_g1	5527	5546	5537	-30.80	-20.20	0.655844155844156	9.5	4-12,5543-5535;14-19,5534-5529	1-3,5546-5544[UP5];13-13,x-x[BULq];20-21,5528-5527[UP3]	..((((((-(((((((((...&...))))))))).))))))..	GGAACGAG-AGGGCAGAAACU&AAAUUCUGUCCUUCUUGUUAC	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN5032_c0_g1_5537_TPlot.pdf
TRINITY_DN5034_c0_g2:18	si_a546	TRINITY_DN5034_c0_g2	4	27	18	-28.60	-20.32	0.71048951048951	6	1-14,27-14;17-21,8-4	15-16,13-9[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN5034_c0_g2_18_TPlot.pdf
TRINITY_DN5034_c0_g2:184	si_a119	TRINITY_DN5034_c0_g2	172	193	184	-30.30	-20.20	0.666666666666667	9	1-10,193-184;15-21,178-172	11-14,183-179[AILt]	(((((((.....((((((((((&))))))))))-....)))))))	UAUUGCUUAAACAACAAGCUUG&CGAGCUUGUU-UUAUAGCAAUA	3	0.999369353721816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN5034_c0_g2_184_TPlot.pdf
TRINITY_DN5034_c0_g2:185	si_a118	TRINITY_DN5034_c0_g2	173	194	185	-30.70	-20.30	0.661237785016287	8	1-11,194-184;16-21,178-173	12-15,183-179[AILt]	((((((.....(((((((((((&)))))))))))-....))))))	AUUGCUUAAACAACAAGCUUGU&ACGAGCUUGUU-UUAUAGCAAU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN5034_c0_g2_185_TPlot.pdf
TRINITY_DN5034_c0_g2:373	si_s414	TRINITY_DN5034_c0_g2	362	382	373	-24.90	-17.10	0.686746987951807	11	4-10,379-373;12-20,371-363	1-3,382-380[UP5];11-11,372-372[SIL];21-21,362-362[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	CUGUGUAGAACGUGUUGUAUG&AAAACGACAUAUUCUAUAUAA	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN5034_c0_g2_373_TPlot.pdf
TRINITY_DN5034_c0_g2:530	si_s879	TRINITY_DN5034_c0_g2	519	543	530	-24.30	-16.94	0.697119341563786	14.5	1-9,543-535;13-21,527-519	10-12,534-528[AILt]	(((((((((.......(((((((((&)))))))))----...)))))))))	CCUGUUUAUAAUUAAGUAGUUCUAA&UUAGAACUA----AAAAUAAAUAGG	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s879_TRINITY_DN5034_c0_g2_530_TPlot.pdf
TRINITY_DN50370_c0_g1:754	si_s427	TRINITY_DN50370_c0_g1	739	764	754	-23.00	-15.00	0.652173913043478	7	1-3,764-762;4-17,760-747;18-21,742-739	x-x,761-761[BULt];x-x,746-743[BULt]	((((....((((((((((((((.(((&)))-))))))))))))))----))))	UAUGGUAAUAAUUAUUGUUGUACUAG&CUA-UAUAACAAUAAUUA----CAUA	0	0.0911332025703633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN50370_c0_g1_754_TPlot.pdf
TRINITY_DN50370_c0_g1:758	si_s423	TRINITY_DN50370_c0_g1	747	768	758	-21.50	-15.10	0.702325581395349	9	4-7,765-762;8-21,760-747	1-3,768-766[UP5];x-x,761-761[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	UAAUUAUUGUUGUACUAGGGAG&UAUUCUA-UAUAACAAUAAUUA	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN50370_c0_g1_758_TPlot.pdf
TRINITY_DN50386_c0_g1:242	si_s606	TRINITY_DN50386_c0_g1	231	250	242	-28.20	-19.40	0.687943262411348	7.5	2-5,249-246;7-8,245-244;10-21,242-231	1-1,250-250[UP5];6-6,x-x[BULq];9-9,243-243[SIL]	((((((((((((.((-((((.&.)))).)).))))))))))))	UGGAUUUGAAGAUGG-UCGCC&AGCGAAUCUUUUUUAAAUCCA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN50386_c0_g1_242_TPlot.pdf
TRINITY_DN5038_c0_g1:359	si_s41	TRINITY_DN5038_c0_g1	348	371	359	-25.00	-18.92	0.7568	13.5	1-7,371-365;10-20,359-349	8-9,364-360[AILt];21-21,348-348[UP3]	.(((((((((((.....(((((((&)))))))---..))))))))))).	AGAGAUCCAGUUUCCUGUAGAGAU&AUCUUUA---AUAAUUGGAUUUCA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN5038_c0_g1_359_TPlot.pdf
TRINITY_DN503_c0_g1:1132	si_a398	TRINITY_DN503_c0_g1	1121	1141	1132	-22.40	-14.70	0.65625	9	2-15,1140-1127	1-1,1141-1141[UP5];16-21,1126-1121[UP3]	......((((((((((((((.&.))))))))))))))......	GCCUGUGGACAAUUCUGUAUA&AAUAUAGAAUUGUUUUGUUUA	4	0.999999999960934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN503_c0_g1_1132_TPlot.pdf
TRINITY_DN503_c0_g1:1241	si_s820	TRINITY_DN503_c0_g1	1230	1250	1241	-22.10	-15.10	0.683257918552036	4.5	1-17,1250-1234	18-21,1233-1230[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCAAUUUUAUUAUUAAGAAAA&UUUUCUUAAUAAUGAAAAACA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN503_c0_g1_1241_TPlot.pdf
TRINITY_DN503_c0_g1:649	si_s434	TRINITY_DN503_c0_g1	638	658	649	-21.50	-15.40	0.716279069767442	6	1-2,658-657;4-18,655-641	3-3,656-656[SIL];19-21,640-638[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	AAAAUAAUAUGUAGUUAUAGU&ACAAUAAUUACAUAUUAUAUA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN503_c0_g1_649_TPlot.pdf
TRINITY_DN50402_c0_g1:271	si_s5	TRINITY_DN50402_c0_g1	260	280	271	-21.70	-16.20	0.746543778801843	6.5	1-17,280-264	18-21,263-260[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUCUUGAUAAUAAGUGGUAUA&UAUAUUACUUAUUAUUACUAU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN50402_c0_g1_271_TPlot.pdf
TRINITY_DN5041_c0_g1:1081	si_s431	TRINITY_DN5041_c0_g1	1070	1091	1081	-21.10	-15.10	0.71563981042654	8.5	2-7,1090-1085;10-21,1081-1070	1-1,1091-1091[UP5];8-9,1084-1082[AILt]	((((((((((((...((((((.&.))))))-..))))))))))))	AUGGUGUGUAAUGUUUUGUUAA&AUAACAA-UAAUUACAUAUUAU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN5041_c0_g1_1081_TPlot.pdf
TRINITY_DN5042_c0_g1:1104	si_s898	TRINITY_DN5042_c0_g1	1093	1113	1104	-30.70	-20.20	0.657980456026059	7	1-11,1113-1103;14-19,1100-1095	12-13,1102-1101[SIL];20-21,1094-1093[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	UCUGAAAUAAAAGAGGAAGUC&GGCUUUCUCUUCAAUUUCAAU	2	0.999990121341346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN5042_c0_g1_1104_TPlot.pdf
TRINITY_DN5042_c0_g1:1121	si_s90	TRINITY_DN5042_c0_g1	1106	1130	1121	-35.30	-23.80	0.674220963172805	9.5	1-14,1130-1117;15-19,1112-1108	x-x,1116-1113[BULt];20-21,1107-1106[UP3]	..(((((....((((((((((((((&))))))))))))))----)))))..	AGGAAGUCAAAGAGGAGGAAGAGAG&CUUUCUUCUUCUUC----GCUUCGG	3	0.999999999990932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5042_c0_g1_1121_TPlot.pdf
TRINITY_DN5042_c0_g1:1122	si_s89	TRINITY_DN5042_c0_g1	1107	1131	1122	-35.30	-24.00	0.679886685552408	9	2-15,1130-1117;16-20,1112-1108	1-1,1131-1131[UP5];x-x,1116-1113[BULt];21-21,1107-1107[UP3]	.(((((....((((((((((((((.&.))))))))))))))----))))).	GGAAGUCAAAGAGGAGGAAGAGAGC&CCUUUCUUCUUCUUC----GCUUCG	2	0.999999665452278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5042_c0_g1_1122_TPlot.pdf
TRINITY_DN5042_c0_g1:1123	si_s88	TRINITY_DN5042_c0_g1	1108	1133	1123	-34.80	-24.70	0.709770114942529	9	1-2,1133-1132;3-16,1130-1117;17-21,1112-1108	x-x,1131-1131[BULt];x-x,1116-1113[BULt]	(((((....((((((((((((((.((&))-))))))))))))))----)))))	GAAGUCAAAGAGGAGGAAGAGAGCGA&UC-CUUUCUUCUUCUUC----GCUUC	2	0.999879451440618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5042_c0_g1_1123_TPlot.pdf
TRINITY_DN5042_c0_g1:1124	si_s87	TRINITY_DN5042_c0_g1	1109	1134	1124	-32.90	-21.70	0.659574468085106	10	2-3,1133-1132;4-17,1130-1117;18-21,1112-1109	1-1,1134-1134[UP5];x-x,1131-1131[BULt];x-x,1116-1113[BULt]	((((....((((((((((((((.((.&.))-))))))))))))))----))))	AAGUCAAAGAGGAGGAAGAGAGCGAU&UUC-CUUUCUUCUUCUUC----GCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5042_c0_g1_1124_TPlot.pdf
TRINITY_DN5042_c0_g1:1125	si_s86	TRINITY_DN5042_c0_g1	1114	1135	1125	-32.90	-21.50	0.653495440729483	10	3-4,1133-1132;5-18,1130-1117	1-2,1135-1134[UP5];x-x,1131-1131[BULt];19-21,1116-1114[UP3]	...((((((((((((((.((..&..))-))))))))))))))...	AAAGAGGAGGAAGAGAGCGAUG&UUUC-CUUUCUUCUUCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5042_c0_g1_1125_TPlot.pdf
TRINITY_DN5042_c0_g1:1127	si_s84	TRINITY_DN5042_c0_g1	1116	1139	1127	-32.30	-22.90	0.708978328173375	9	1-4,1139-1136;5-6,1133-1132;7-20,1130-1117	x-x,1135-1134[BULt];x-x,1131-1131[BULt];21-21,1116-1116[UP3]	.((((((((((((((.((..((((&))))--))-)))))))))))))).	AGAGGAGGAAGAGAGCGAUGAAGA&UCUU--UC-CUUUCUUCUUCUUCG	2	0.999996439886115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5042_c0_g1_1127_TPlot.pdf
TRINITY_DN5042_c0_g1:1128	si_s83	TRINITY_DN5042_c0_g1	1117	1140	1128	-30.90	-22.70	0.73462783171521	9	2-5,1139-1136;6-7,1133-1132;8-21,1130-1117	1-1,1140-1140[UP5];x-x,1135-1134[BULt];x-x,1131-1131[BULt]	((((((((((((((.((..((((.&.))))--))-))))))))))))))	GAGGAGGAAGAGAGCGAUGAAGAU&UUCUU--UC-CUUUCUUCUUCUUC	2	0.999984917339103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5042_c0_g1_1128_TPlot.pdf
TRINITY_DN5042_c0_g1:1129	si_s82	TRINITY_DN5042_c0_g1	1118	1141	1129	-28.90	-19.50	0.674740484429066	11	3-6,1139-1136;7-8,1133-1132;9-21,1130-1118	1-2,1141-1140[UP5];x-x,1135-1134[BULt];x-x,1131-1131[BULt]	(((((((((((((.((..((((..&..))))--))-)))))))))))))	AGGAGGAAGAGAGCGAUGAAGAUA&UUUCUU--UC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5042_c0_g1_1129_TPlot.pdf
TRINITY_DN5042_c0_g1:1132	si_s807	TRINITY_DN5042_c0_g1	1120	1141	1132	-28.90	-19.20	0.664359861591695	8	1-10,1141-1132;12-12,1130-1130;13-20,1128-1121	11-11,1131-1131[SIL];x-x,1129-1129[BULt];21-21,1120-1120[UP3]	.((((((((.(.((((((((((&)))))))))).)-)))))))).	GAGGAAGAGAGCGAUGAAGAUA&UAUCUUCGUUAC-CUUUUCUUA	2	0.999997889226889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5042_c0_g1_1132_TPlot.pdf
TRINITY_DN5042_c0_g1:1133	si_s806	TRINITY_DN5042_c0_g1	1121	1142	1133	-28.60	-19.00	0.664335664335664	7	2-11,1141-1132;13-13,1130-1130;14-21,1128-1121	1-1,1142-1142[UP5];12-12,1131-1131[SIL];x-x,1129-1129[BULt]	((((((((.(.((((((((((.&.)))))))))).)-))))))))	AGGAAGAGAGCGAUGAAGAUAU&UUAUCUUCGUUAC-CUUUUCUU	2	0.999999837463449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5042_c0_g1_1133_TPlot.pdf
TRINITY_DN5042_c0_g1:1208	si_a494	TRINITY_DN5042_c0_g1	1195	1218	1208	-29.50	-20.90	0.708474576271186	5.5	1-5,1218-1214;6-13,1212-1205;14-21,1202-1195	x-x,1213-1213[BULt];x-x,1204-1203[BULt]	((((((((..((((((((.(((((&)))))-))))))))--))))))))	GAAGAUGAUGAAGACGACGAUAUU&AAUAU-GUCGUUUU--UCGUCUUC	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN5042_c0_g1_1208_TPlot.pdf
TRINITY_DN5042_c0_g1:1209	si_a493	TRINITY_DN5042_c0_g1	1196	1219	1209	-29.50	-20.80	0.705084745762712	5.5	1-6,1219-1214;7-14,1212-1205;15-21,1202-1196	x-x,1213-1213[BULt];x-x,1204-1203[BULt]	(((((((..((((((((.((((((&))))))-))))))))--)))))))	AAGAUGAUGAAGACGACGAUAUUC&GAAUAU-GUCGUUUU--UCGUCUU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN5042_c0_g1_1209_TPlot.pdf
TRINITY_DN5042_c0_g1:1306	si_a68	TRINITY_DN5042_c0_g1	1295	1315	1306	-25.40	-17.00	0.669291338582677	9	1-8,1315-1308;11-19,1305-1297	9-10,1307-1306[SIL];20-21,1296-1295[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	AUGAGGACGAUGAGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.99999970460364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5042_c0_g1_1306_TPlot.pdf
TRINITY_DN5042_c0_g1:1415	si_s73	TRINITY_DN5042_c0_g1	1402	1424	1415	-24.00	-16.10	0.670833333333333	5.5	1-3,1424-1422;5-14,1420-1411;15-21,1408-1402	4-4,1421-1421[SIL];x-x,1410-1409[BULt]	(((((((..((((((((((.(((&))).))))))))))--)))))))	AAAGGAGGUAGAAAGAAAAAAGA&UCUAUUUUUUUUCU--UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5042_c0_g1_1415_TPlot.pdf
TRINITY_DN5042_c0_g1:1416	si_s72	TRINITY_DN5042_c0_g1	1403	1425	1416	-24.10	-15.80	0.655601659751037	6	1-4,1425-1422;6-15,1420-1411;16-21,1408-1403	5-5,1421-1421[SIL];x-x,1410-1409[BULt]	((((((..((((((((((.((((&)))).))))))))))--))))))	AAGGAGGUAGAAAGAAAAAAGAG&UUCUAUUUUUUUUCU--UUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5042_c0_g1_1416_TPlot.pdf
TRINITY_DN5042_c0_g1:1417	si_s71	TRINITY_DN5042_c0_g1	1404	1426	1417	-25.70	-18.00	0.700389105058366	6.5	1-5,1426-1422;7-16,1420-1411;17-21,1408-1404	6-6,1421-1421[SIL];x-x,1410-1409[BULt]	(((((..((((((((((.(((((&))))).))))))))))--)))))	AGGAGGUAGAAAGAAAAAAGAGG&CUUCUAUUUUUUUUCU--UUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5042_c0_g1_1417_TPlot.pdf
TRINITY_DN5042_c0_g1:1423	si_s69	TRINITY_DN5042_c0_g1	1412	1431	1423	-23.40	-17.40	0.743589743589744	7	3-7,1429-1425;9-21,1424-1412	1-2,1431-1430[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAAGAAAAAAGA-GGAAGAA&AACUUCUAUUUUUUUUCUUUC	4	0.999999994794446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5042_c0_g1_1423_TPlot.pdf
TRINITY_DN5042_c0_g1:150	si_a638	TRINITY_DN5042_c0_g1	139	160	150	-24.40	-16.10	0.659836065573771	8.5	1-3,160-158;4-11,156-149;13-19,147-141	x-x,157-157[BULt];12-12,148-148[SIL];20-21,140-139[UP3]	..(((((((.((((((((.(((&)))-)))))))).)))))))..	UCUGUUACUGAAGAAAGUACGA&UCG-AUUUUUUUGAGUAAUAUA	3	0.999999858358662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN5042_c0_g1_150_TPlot.pdf
TRINITY_DN5042_c0_g1:1714	si_s71	TRINITY_DN5042_c0_g1	1703	1723	1714	-25.70	-17.18	0.668482490272373	9	1-8,1723-1716;12-19,1712-1705	9-11,1715-1713[SIL];20-21,1704-1703[UP3]	..((((((((...((((((((&))))))))...))))))))..	CAGAAAGAAAUCUGAUAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5042_c0_g1_1714_TPlot.pdf
TRINITY_DN5042_c0_g1:1715	si_s70	TRINITY_DN5042_c0_g1	1704	1724	1715	-25.80	-17.18	0.665891472868217	9	2-9,1723-1716;13-20,1712-1705	1-1,1724-1724[UP5];10-12,1715-1713[SIL];21-21,1704-1704[UP3]	.((((((((...((((((((.&.))))))))...)))))))).	AGAAAGAAAUCUGAUAGAAGA&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5042_c0_g1_1715_TPlot.pdf
TRINITY_DN5042_c0_g1:2236	si_a792	TRINITY_DN5042_c0_g1	2225	2244	2236	-27.60	-18.10	0.655797101449275	9	2-7,2243-2238;11-20,2235-2226	1-1,2244-2244[UP5];8-10,2237-2236[AILq];21-21,2225-2225[UP3]	.((((((((((..-((((((.&.))))))...)))))))))).	UGGAUUGGAAAUC-GAAAGAG&AUUUUUCUAUUUUCCAAUCCG	4	0.999999742471099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN5042_c0_g1_2236_TPlot.pdf
TRINITY_DN5042_c0_g1:281	si_a329	TRINITY_DN5042_c0_g1	271	290	281	-29.60	-21.60	0.72972972972973	9.5	4-10,287-281;12-20,280-272	1-3,290-288[UP5];11-11,x-x[BULq];21-21,271-271[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	AGGGACAGGG-AUAAAGAUAA&AUUUUUUUAUUCCUUGUCCCG	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5042_c0_g1_281_TPlot.pdf
TRINITY_DN5042_c0_g1:282	si_a328	TRINITY_DN5042_c0_g1	272	291	282	-30.10	-21.20	0.704318936877076	10.5	5-11,287-281;13-21,280-272	1-4,291-288[UP5];12-12,x-x[BULq]	(((((((((-(((((((....&....))))))).)))))))))	GGGACAGGG-AUAAAGAUAAG&GAUUUUUUUAUUCCUUGUCCC	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN5042_c0_g1_282_TPlot.pdf
TRINITY_DN5042_c0_g1:421	si_a191	TRINITY_DN5042_c0_g1	411	432	421	-32.00	-20.90	0.653125	8	1-5,432-428;6-12,425-419;14-18,418-414	x-x,427-426[BULt];13-13,x-x[BULq];19-21,413-411[UP3]	...(((((-(((((((..(((((&)))))--))))))).)))))...	ACGUAGUG-ACAGGGAUAAAGAU&AUCUU--UCCCUGUUCACUAAUA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN5042_c0_g1_421_TPlot.pdf
TRINITY_DN5042_c0_g1:422	si_a190	TRINITY_DN5042_c0_g1	412	433	422	-32.00	-22.20	0.69375	7	1-6,433-428;7-13,425-419;15-19,418-414	x-x,427-426[BULt];14-14,x-x[BULq];20-21,413-412[UP3]	..(((((-(((((((..((((((&))))))--))))))).)))))..	CGUAGUG-ACAGGGAUAAAGAUA&UAUCUU--UCCCUGUUCACUAAU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN5042_c0_g1_422_TPlot.pdf
TRINITY_DN5042_c0_g1:4282	si_a20	TRINITY_DN5042_c0_g1	4271	4291	4282	-26.70	-17.50	0.655430711610487	4.5	2-8,4290-4284;10-12,4282-4280;14-21,4278-4271	1-1,4291-4291[UP5];9-9,4283-4283[SIL];13-13,4279-4279[SIL]	((((((((.(((.(((((((.&.))))))).))).))))))))	UGGAACUAUAAAAAAAUAGGG&GCCUAUUUAUUUUUAGUUCUA	3	0.999999994217894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN5042_c0_g1_4282_TPlot.pdf
TRINITY_DN5042_c0_g1:479	si_a333	TRINITY_DN5042_c0_g1	468	487	479	-30.60	-20.20	0.660130718954248	8	2-6,486-482;8-16,481-473	1-1,487-487[UP5];7-7,x-x[BULq];17-21,472-468[UP3]	.....(((((((((-(((((.&.))))).))))))))).....	ACACAGGGACAAGG-AUAAAG&UUUUAUUCCUUGUCCCGAAAA	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN5042_c0_g1_479_TPlot.pdf
TRINITY_DN5042_c0_g1:482	si_a329	TRINITY_DN5042_c0_g1	472	491	482	-29.60	-21.90	0.739864864864865	9	4-10,488-482;12-20,481-473	1-3,491-489[UP5];11-11,x-x[BULq];21-21,472-472[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	AGGGACAAGG-AUAAAGAUCG&AUUUUUUUAUUCCUUGUCCCG	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5042_c0_g1_482_TPlot.pdf
TRINITY_DN5042_c0_g1:589	si_s82	TRINITY_DN5042_c0_g1	578	599	589	-28.90	-19.00	0.657439446366782	6.5	1-8,599-592;9-15,590-584;18-21,581-578	x-x,591-591[BULt];16-17,583-582[SIL]	((((..(((((((.((((((((&))))))))-)))))))..))))	GAGAUAAAGAAAGAGAAAGGGA&UUUCUUUC-CUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5042_c0_g1_589_TPlot.pdf
TRINITY_DN5042_c0_g1:596	si_s76	TRINITY_DN5042_c0_g1	584	606	596	-23.60	-16.30	0.690677966101695	7	1-6,606-601;7-14,599-592;15-21,590-584	x-x,600-600[BULt];x-x,591-591[BULt]	(((((((.((((((((.((((((&))))))-))))))))-)))))))	AAGAAAGAGAAAGGGACAAGGAU&AUUUUU-UUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5042_c0_g1_596_TPlot.pdf
TRINITY_DN5042_c0_g1:597	si_s75	TRINITY_DN5042_c0_g1	585	607	597	-24.00	-16.70	0.695833333333333	7	1-7,607-601;8-15,599-592;16-21,590-585	x-x,600-600[BULt];x-x,591-591[BULt]	((((((.((((((((.(((((((&)))))))-))))))))-))))))	AGAAAGAGAAAGGGACAAGGAUA&UAUUUUU-UUUCUUUC-CUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5042_c0_g1_597_TPlot.pdf
TRINITY_DN5042_c0_g1:602	si_a333	TRINITY_DN5042_c0_g1	591	610	602	-30.60	-20.20	0.660130718954248	8	2-6,609-605;8-16,604-596	1-1,610-610[UP5];7-7,x-x[BULq];17-21,595-591[UP3]	.....(((((((((-(((((.&.))))).))))))))).....	AGAAAGGGACAAGG-AUAAAG&UUUUAUUCCUUGUCCCGAAAA	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN5042_c0_g1_602_TPlot.pdf
TRINITY_DN5042_c0_g1:604	si_a331	TRINITY_DN5042_c0_g1	593	612	604	-30.60	-22.80	0.745098039215686	6	1-8,612-605;10-18,604-596	9-9,x-x[BULq];19-21,595-593[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AAAGGGACAAGG-AUAAAGAA&UUUUUUAUUCCUUGUCCCGAA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN5042_c0_g1_604_TPlot.pdf
TRINITY_DN5042_c0_g1:605	si_a329	TRINITY_DN5042_c0_g1	595	614	605	-29.60	-23.70	0.800675675675676	5	2-10,613-605;12-20,604-596	1-1,614-614[UP5];11-11,x-x[BULq];21-21,595-595[UP3]	.(((((((((-(((((((((.&.))))))))).))))))))).	AGGGACAAGG-AUAAAGAAAA&AUUUUUUUAUUCCUUGUCCCG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5042_c0_g1_605_TPlot.pdf
TRINITY_DN5042_c0_g1:606	si_a328	TRINITY_DN5042_c0_g1	596	615	606	-30.10	-23.30	0.774086378737541	6	3-11,613-605;13-21,604-596	1-2,615-614[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	GGGACAAGG-AUAAAGAAAAA&GAUUUUUUUAUUCCUUGUCCC	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN5042_c0_g1_606_TPlot.pdf
TRINITY_DN5042_c0_g1:668	si_a330	TRINITY_DN5042_c0_g1	657	677	668	-30.50	-20.20	0.662295081967213	8.5	1-7,677-671;10-19,668-659	8-9,670-669[SIL];20-21,658-657[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	CAGGGAUAAGGACAAGGAAAA&UUUUUUUAUUCCUUGUCCCGA	3	0.99999950308576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN5042_c0_g1_668_TPlot.pdf
TRINITY_DN5042_c0_g1:669	si_a329	TRINITY_DN5042_c0_g1	658	678	669	-29.60	-20.20	0.682432432432432	8.5	2-8,677-671;11-20,668-659	1-1,678-678[UP5];9-10,670-669[SIL];21-21,658-658[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	AGGGAUAAGGACAAGGAAAAA&AUUUUUUUAUUCCUUGUCCCG	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5042_c0_g1_669_TPlot.pdf
TRINITY_DN5042_c0_g1:724	si_a337	TRINITY_DN5042_c0_g1	713	733	724	-30.80	-20.20	0.655844155844156	12	3-13,731-721	1-2,733-732[UP5];14-21,720-713[UP3]	........(((((((((((..&..)))))))))))........	GCAAGGACCGGGAUAAGGAUA&AUUCCUUGUCCCGAAAAUAUU	2	0.99060244577417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN5042_c0_g1_724_TPlot.pdf
TRINITY_DN5042_c0_g1:727	si_a334	TRINITY_DN5042_c0_g1	716	735	727	-30.70	-20.60	0.671009771986971	8	1-5,735-731;7-16,730-721	6-6,x-x[BULq];17-21,720-716[UP3]	.....((((((((((-(((((&))))).)))))))))).....	AGGACCGGGAUAAGG-AUAAA&UUUAUUCCUUGUCCCGAAAAU	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN5042_c0_g1_727_TPlot.pdf
TRINITY_DN5042_c0_g1:728	si_a333	TRINITY_DN5042_c0_g1	717	736	728	-30.60	-20.80	0.679738562091503	8	2-6,735-731;8-17,730-721	1-1,736-736[UP5];7-7,x-x[BULq];18-21,720-717[UP3]	....((((((((((-(((((.&.))))).))))))))))....	GGACCGGGAUAAGG-AUAAAG&UUUUAUUCCUUGUCCCGAAAA	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN5042_c0_g1_728_TPlot.pdf
TRINITY_DN5042_c0_g1:729	si_a332	TRINITY_DN5042_c0_g1	718	737	729	-30.60	-22.30	0.72875816993464	6.5	1-7,737-731;9-18,730-721	8-8,x-x[BULq];19-21,720-718[UP3]	...((((((((((-(((((((&))))))).))))))))))...	GACCGGGAUAAGG-AUAAAGA&UUUUUAUUCCUUGUCCCGAAA	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN5042_c0_g1_729_TPlot.pdf
TRINITY_DN5042_c0_g1:730	si_a331	TRINITY_DN5042_c0_g1	719	738	730	-30.60	-22.40	0.73202614379085	6.5	2-8,737-731;10-19,730-721	1-1,738-738[UP5];9-9,x-x[BULq];20-21,720-719[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	ACCGGGAUAAGG-AUAAAGAC&UUUUUUAUUCCUUGUCCCGAA	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN5042_c0_g1_730_TPlot.pdf
TRINITY_DN5042_c0_g1:7325	si_a317	TRINITY_DN5042_c0_g1	7314	7334	7325	-24.30	-17.10	0.703703703703704	4	1-12,7334-7323;14-20,7321-7315	13-13,7322-7322[SIL];21-21,7314-7314[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AGAAAAAAAUAUGGAUAAAUU&GAUUUAUCCAUGAUUUUUUUA	4	0.999923241221074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN5042_c0_g1_7325_TPlot.pdf
TRINITY_DN5042_c0_g1:773	si_a330	TRINITY_DN5042_c0_g1	762	782	773	-30.50	-19.90	0.652459016393443	9	1-7,782-776;10-18,773-765	8-9,775-774[SIL];19-21,764-762[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	UAAGGACAAGGAUAGAAAAGA&UUUUUUUAUUCCUUGUCCCGA	2	0.999978361284052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN5042_c0_g1_773_TPlot.pdf
TRINITY_DN5042_c0_g1:776	si_a327	TRINITY_DN5042_c0_g1	765	785	776	-28.40	-19.90	0.700704225352113	11	4-10,782-776;13-21,773-765	1-3,785-783[UP5];11-12,775-774[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GGACAAGGAUAGAAAAGAAAA&UGAUUUUUUUAUUCCUUGUCC	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN5042_c0_g1_776_TPlot.pdf
TRINITY_DN5042_c0_g1:779	si_s73	TRINITY_DN5042_c0_g1	768	788	779	-24.00	-17.00	0.708333333333333	5	1-3,788-786;5-14,784-775;16-20,773-769	4-4,785-785[SIL];15-15,774-774[SIL];21-21,768-768[UP3]	.(((((.((((((((((.(((&))).)))))))))).))))).	CAAGGAUAGAAAAGAAAAAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5042_c0_g1_779_TPlot.pdf
TRINITY_DN5042_c0_g1:780	si_s72	TRINITY_DN5042_c0_g1	769	789	780	-24.10	-17.90	0.742738589211618	4	1-4,789-786;6-15,784-775;17-21,773-769	5-5,785-785[SIL];16-16,774-774[SIL]	(((((.((((((((((.((((&)))).)))))))))).)))))	AAGGAUAGAAAAGAAAAAGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999309844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5042_c0_g1_780_TPlot.pdf
TRINITY_DN5046_c0_g1:857	si_a479	TRINITY_DN5046_c0_g1	846	866	857	-23.00	-15.00	0.652173913043478	9	3-18,864-849	1-2,866-865[UP5];19-21,848-846[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUGAUUUUGUGUAACGAUAUU&AUUAUUGUUAUAUAGAAUAUG	4	0.999639012009468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN5046_c0_g1_857_TPlot.pdf
TRINITY_DN5048_c0_g2:607	si_a794	TRINITY_DN5048_c0_g2	595	616	607	-28.60	-20.50	0.716783216783217	6	2-13,615-604;15-19,601-597	1-1,616-616[UP5];14-14,603-602[AILt];20-21,596-595[UP3]	..(((((..((((((((((((.&.))))))))))))-.)))))..	UACGGAUAAGGAAAAUGGAAAG&UUUUCUAUUUUCC-AAUCCGAA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN5048_c0_g2_607_TPlot.pdf
TRINITY_DN5048_c0_g2:608	si_a793	TRINITY_DN5048_c0_g2	596	617	608	-28.50	-22.20	0.778947368421053	5	1-14,617-604;16-20,601-597	15-15,603-602[AILt];21-21,596-596[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	ACGGAUAAGGAAAAUGGAAAGA&UUUUUCUAUUUUCC-AAUCCGA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN5048_c0_g2_608_TPlot.pdf
TRINITY_DN504_c1_g3:1210	si_a498	TRINITY_DN504_c1_g3	1199	1219	1210	-33.50	-22.10	0.659701492537313	12	5-18,1215-1202	1-4,1219-1216[UP5];19-21,1201-1199[UP3]	...((((((((((((((....&....))))))))))))))...	UAUGGAAGACGAAAGGCAAUU&UGUCGUUUUUCGUCUUCCUUG	3	0.99999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN504_c1_g3_1210_TPlot.pdf
TRINITY_DN504_c1_g3:1358	si_s78	TRINITY_DN504_c1_g3	1347	1367	1358	-26.20	-19.40	0.740458015267176	5.5	1-3,1367-1365;5-19,1363-1349	4-4,1364-1364[SIL];20-21,1348-1347[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AUAAGAGAGGAAAGAAACAGA&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999999818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN504_c1_g3_1358_TPlot.pdf
TRINITY_DN504_c1_g3:1360	si_s76	TRINITY_DN504_c1_g3	1349	1369	1360	-23.60	-21.40	0.906779661016949	3.5	1-5,1369-1365;7-21,1363-1349	6-6,1364-1364[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	AAGAGAGGAAAGAAACAGAAU&AUUUUUUUUCUUUCCUUUCUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN504_c1_g3_1360_TPlot.pdf
TRINITY_DN504_c1_g3:137	si_s184	TRINITY_DN504_c1_g3	126	146	137	-33.40	-23.80	0.712574850299401	8	1-9,146-138;11-15,136-132	10-10,137-137[SIL];16-21,131-126[UP3]	......(((((.(((((((((&))))))))).)))))......	CGUCGAAAUCGCUACUCGGGC&GCCCGAGUAACGAUUAUUUUG	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN504_c1_g3_137_TPlot.pdf
TRINITY_DN504_c1_g3:138	si_s183	TRINITY_DN504_c1_g3	127	147	138	-32.40	-23.90	0.737654320987654	8	2-10,146-138;12-16,136-132	1-1,147-147[UP5];11-11,137-137[SIL];17-21,131-127[UP3]	.....(((((.(((((((((.&.))))))))).))))).....	GUCGAAAUCGCUACUCGGGCG&UGCCCGAGUAACGAUUAUUUU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN504_c1_g3_138_TPlot.pdf
TRINITY_DN504_c1_g3:139	si_s182	TRINITY_DN504_c1_g3	128	148	139	-32.60	-25.50	0.782208588957055	7	1-11,148-138;13-17,136-132	12-12,137-137[SIL];18-21,131-128[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UCGAAAUCGCUACUCGGGCGU&AUGCCCGAGUAACGAUUAUUU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN504_c1_g3_139_TPlot.pdf
TRINITY_DN504_c1_g3:140	si_s181	TRINITY_DN504_c1_g3	129	149	140	-34.60	-25.90	0.748554913294798	6	2-12,148-138;14-18,136-132	1-1,149-149[UP5];13-13,137-137[SIL];19-21,131-129[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	CGAAAUCGCUACUCGGGCGUG&GAUGCCCGAGUAACGAUUAUU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN504_c1_g3_140_TPlot.pdf
TRINITY_DN504_c1_g3:141	si_s180	TRINITY_DN504_c1_g3	130	150	141	-35.30	-25.90	0.73371104815864	7	3-13,148-138;15-19,136-132	1-2,150-149[UP5];14-14,137-137[SIL];20-21,131-130[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	GAAAUCGCUACUCGGGCGUGA&AGAUGCCCGAGUAACGAUUAU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s180_TRINITY_DN504_c1_g3_141_TPlot.pdf
TRINITY_DN504_c1_g3:142	si_s179	TRINITY_DN504_c1_g3	131	151	142	-35.10	-25.90	0.737891737891738	8	4-14,148-138;16-20,136-132	1-3,151-149[UP5];15-15,137-137[SIL];21-21,131-131[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	AAAUCGCUACUCGGGCGUGAC&AAGAUGCCCGAGUAACGAUUA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s179_TRINITY_DN504_c1_g3_142_TPlot.pdf
TRINITY_DN504_c1_g3:143	si_s178	TRINITY_DN504_c1_g3	132	152	143	-34.70	-25.60	0.737752161383285	9	5-15,148-138;17-21,136-132	1-4,152-149[UP5];16-16,137-137[SIL]	(((((.(((((((((((....&....))))))))))).)))))	AAUCGCUACUCGGGCGUGACG&AAAGAUGCCCGAGUAACGAUU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s178_TRINITY_DN504_c1_g3_143_TPlot.pdf
TRINITY_DN504_c1_g3:144	si_s177	TRINITY_DN504_c1_g3	133	153	144	-35.10	-24.70	0.703703703703704	11	6-16,148-138;18-21,136-133	1-5,153-149[UP5];17-17,137-137[SIL]	((((.(((((((((((.....&.....))))))))))).))))	AUCGCUACUCGGGCGUGACGG&UAAAGAUGCCCGAGUAACGAU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s177_TRINITY_DN504_c1_g3_144_TPlot.pdf
TRINITY_DN504_c1_g3:181	si_a681	TRINITY_DN504_c1_g3	170	191	181	-33.80	-22.10	0.653846153846154	12.5	5-7,187-185;9-20,182-171	1-4,191-188[UP5];8-8,184-183[AILt];21-21,170-170[UP3]	.((((((((((((..(((....&....)))-.)))))))))))).	CGUUCGGAACCGCCAUGAUGAC&UUAUUCA-CGCGGUUUCGAACA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN504_c1_g3_181_TPlot.pdf
TRINITY_DN504_c1_g3:2846	si_a69	TRINITY_DN504_c1_g3	2835	2857	2846	-24.00	-15.60	0.65	8	1-6,2857-2852;7-9,2850-2848;10-19,2846-2837	x-x,2851-2851[BULt];x-x,2847-2847[BULt];20-21,2836-2835[UP3]	..((((((((((.(((.((((((&))))))-)))-))))))))))..	AAGGAAGACAAUCUUGAAGAGAA&UUCUUU-CAA-AUUGUUUUUCAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN504_c1_g3_2846_TPlot.pdf
TRINITY_DN504_c1_g3:2849	si_a67	TRINITY_DN504_c1_g3	2837	2859	2849	-27.20	-19.40	0.713235294117647	6.5	1-8,2859-2852;9-11,2850-2848;12-21,2846-2837	x-x,2851-2851[BULt];x-x,2847-2847[BULt]	((((((((((.(((.((((((((&))))))))-)))-))))))))))	GGAAGACAAUCUUGAAGAGAAGU&GCUUCUUU-CAA-AUUGUUUUUC	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN504_c1_g3_2849_TPlot.pdf
TRINITY_DN504_c1_g3:2850	si_a66	TRINITY_DN504_c1_g3	2838	2860	2850	-26.70	-19.90	0.745318352059925	7	1-9,2860-2852;10-12,2850-2848;13-21,2846-2838	x-x,2851-2851[BULt];x-x,2847-2847[BULt]	(((((((((.(((.(((((((((&)))))))))-)))-)))))))))	GAAGACAAUCUUGAAGAGAAGUG&CGCUUCUUU-CAA-AUUGUUUUU	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN504_c1_g3_2850_TPlot.pdf
TRINITY_DN504_c1_g3:2864	si_s77	TRINITY_DN504_c1_g3	2850	2873	2864	-25.50	-18.50	0.725490196078431	8.5	4-14,2870-2860;15-21,2856-2850	1-3,2873-2871[UP5];x-x,2859-2857[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	GAAGAGAAGUGGAAAGAAAAACAA&UUUUUUUUCUUUCC---UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN504_c1_g3_2864_TPlot.pdf
TRINITY_DN5050_c0_g1:1195	si_s76	TRINITY_DN5050_c0_g1	1182	1204	1195	-23.60	-17.10	0.724576271186441	7	1-11,1204-1194;12-18,1192-1186;19-21,1184-1182	x-x,1193-1193[BULt];x-x,1185-1185[BULt]	(((.(((((((.(((((((((((&)))))))))))-)))))))-)))	AAGAAAAGGAGCAGAGAAAGGAU&AUUUUUUUUCU-UUCCUUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5050_c0_g1_1195_TPlot.pdf
TRINITY_DN5050_c0_g1:1196	si_s75	TRINITY_DN5050_c0_g1	1183	1205	1196	-24.00	-16.20	0.675	7.5	2-12,1204-1194;13-19,1192-1186;20-21,1184-1183	1-1,1205-1205[UP5];x-x,1193-1193[BULt];x-x,1185-1185[BULt]	((.(((((((.(((((((((((.&.)))))))))))-)))))))-))	AGAAAAGGAGCAGAGAAAGGAUC&UAUUUUUUUUCU-UUCCUUU-CU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5050_c0_g1_1196_TPlot.pdf
TRINITY_DN5050_c0_g1:3539	si_s80	TRINITY_DN5050_c0_g1	3527	3548	3539	-28.20	-18.70	0.663120567375887	5	1-14,3548-3535;15-17,3533-3531;19-21,3529-3527	x-x,3534-3534[BULt];18-18,3530-3530[SIL]	(((.(((.((((((((((((((&))))))))))))))-))).)))	GAAAAAGAAAAGGAGAGGGAAA&UUUUUCUUUCCUUU-CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5050_c0_g1_3539_TPlot.pdf
TRINITY_DN5050_c0_g1:3542	si_s77	TRINITY_DN5050_c0_g1	3530	3551	3542	-25.50	-16.70	0.654901960784314	10	4-17,3548-3535;18-20,3533-3531	1-3,3551-3549[UP5];x-x,3534-3534[BULt];21-21,3530-3530[UP3]	.(((.((((((((((((((...&...))))))))))))))-))).	AAAGAAAAGGAGAGGGAAAUAA&UUUUUUUUCUUUCCUUU-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5050_c0_g1_3542_TPlot.pdf
TRINITY_DN5050_c0_g1:3915	si_s80	TRINITY_DN5050_c0_g1	3903	3924	3915	-28.20	-19.70	0.698581560283688	9	4-10,3921-3915;11-20,3913-3904	1-3,3924-3922[UP5];x-x,3914-3914[BULt];21-21,3903-3903[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	CAAGAAGAAAGAGAAGGAACGA&UUUUUCUUUC-CUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5050_c0_g1_3915_TPlot.pdf
TRINITY_DN5050_c0_g1:3917	si_s811	TRINITY_DN5050_c0_g1	3906	3925	3917	-26.40	-17.20	0.651515151515151	8.5	1-6,3925-3920;8-16,3919-3911	7-7,x-x[BULq];17-21,3910-3906[UP3]	.....(((((((((-((((((&)))))).))))))))).....	GAAGAAAGAGAAGG-AACGAG&UUCGUUACCUUUUCUUAAUAA	2	0.999991597100676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN5050_c0_g1_3917_TPlot.pdf
TRINITY_DN5051_c0_g1:862	si_a418	TRINITY_DN5051_c0_g1	850	871	862	-21.20	-13.90	0.655660377358491	6	2-3,870-869;6-17,866-855;18-21,853-850	1-1,871-871[UP5];4-5,868-867[SIL];x-x,854-854[BULt]	((((.((((((((((((..((.&.))..))))))))))))-))))	AUCCAUAUAUUUAUUUAUUUAC&AUAUUUAAAUAAAUAUA-GGAU	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN5051_c0_g1_862_TPlot.pdf
TRINITY_DN5052_c1_g1:2356	si_s447	TRINITY_DN5052_c1_g1	2345	2365	2356	-21.10	-14.30	0.677725118483412	4	2-14,2364-2352;16-20,2350-2346	1-1,2365-2365[UP5];15-15,2351-2351[SIL];21-21,2345-2345[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	CUAAUUUUUGUUGUAUAUAAA&AUUAUAUAUAACAACAAUUAU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN5052_c1_g1_2356_TPlot.pdf
TRINITY_DN5053_c0_g1:2801	si_s39	TRINITY_DN5053_c0_g1	2790	2810	2801	-22.30	-14.70	0.659192825112108	5.5	1-4,2810-2807;6-21,2805-2790	5-5,2806-2806[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	AGAUCUGAUUAUUAGAUGUUU&AAAUCUUUAAUAAUUGGAUUU	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN5053_c0_g1_2801_TPlot.pdf
TRINITY_DN5053_c0_g1:2848	si_a411	TRINITY_DN5053_c0_g1	2837	2857	2848	-17.90	-11.70	0.653631284916201	10	2-14,2856-2844	1-1,2857-2857[UP5];15-21,2843-2837[UP3]	.......(((((((((((((.&.))))))))))))).......	UGUCUAAUAAAUGUGAACAAG&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999997197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN5053_c0_g1_2848_TPlot.pdf
TRINITY_DN5053_c0_g1:2849	si_a410	TRINITY_DN5053_c0_g1	2838	2858	2849	-17.80	-13.40	0.752808988764045	9	1-15,2858-2844	16-21,2843-2838[UP3]	......(((((((((((((((&)))))))))))))))......	GUCUAAUAAAUGUGAACAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5053_c0_g1_2849_TPlot.pdf
TRINITY_DN5053_c0_g1:2850	si_a409	TRINITY_DN5053_c0_g1	2839	2859	2850	-19.50	-13.40	0.687179487179487	9	2-16,2858-2844	1-1,2859-2859[UP5];17-21,2843-2839[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCUAAUAAAUGUGAACAAGAA&GUUUUGUUUAUAUUUAAAUAA	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN5053_c0_g1_2850_TPlot.pdf
TRINITY_DN5053_c0_g1:2851	si_a408	TRINITY_DN5053_c0_g1	2840	2860	2851	-20.10	-13.40	0.666666666666667	10	3-17,2858-2844	1-2,2860-2859[UP5];18-21,2843-2840[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUAAUAAAUGUGAACAAGAAA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999999317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5053_c0_g1_2851_TPlot.pdf
TRINITY_DN5053_c0_g1:2852	si_a407	TRINITY_DN5053_c0_g1	2841	2861	2852	-19.80	-13.40	0.676767676767677	10.5	4-18,2858-2844	1-3,2861-2859[UP5];19-21,2843-2841[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAAUAAAUGUGAACAAGAAAU&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5053_c0_g1_2852_TPlot.pdf
TRINITY_DN5053_c0_g1:2853	si_a406	TRINITY_DN5053_c0_g1	2842	2862	2853	-19.80	-13.40	0.676767676767677	11.5	5-19,2858-2844	1-4,2862-2859[UP5];20-21,2843-2842[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAUAAAUGUGAACAAGAAAUG&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5053_c0_g1_2853_TPlot.pdf
TRINITY_DN5053_c0_g1:2909	si_s692	TRINITY_DN5053_c0_g1	2898	2918	2909	-24.20	-16.60	0.685950413223141	8.5	1-11,2918-2908;14-19,2905-2900	12-13,2907-2906[SIL];20-21,2899-2898[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	UUUAGAUCCUCUAGUUAGGCU&AGUUUAAUUAGUCGAUUUAUU	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN5053_c0_g1_2909_TPlot.pdf
TRINITY_DN5053_c0_g1:3058	si_a600	TRINITY_DN5053_c0_g1	3045	3067	3058	-29.70	-21.60	0.727272727272727	9.5	1-11,3067-3057;12-18,3054-3048	x-x,3056-3055[BULt];19-21,3047-3045[UP3]	...(((((((..(((((((((((&)))))))))))--)))))))...	UGCGGGAUUGAUCGAAGGUUCUG&CAGAAUUUUCG--CAAUUCCAAU	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN5053_c0_g1_3058_TPlot.pdf
TRINITY_DN5053_c0_g1:3059	si_a599	TRINITY_DN5053_c0_g1	3046	3068	3059	-30.40	-21.60	0.710526315789474	9.5	2-12,3067-3057;13-19,3054-3048	1-1,3068-3068[UP5];x-x,3056-3055[BULt];20-21,3047-3046[UP3]	..(((((((..(((((((((((.&.)))))))))))--)))))))..	GCGGGAUUGAUCGAAGGUUCUGA&ACAGAAUUUUCG--CAAUUCCAA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN5053_c0_g1_3059_TPlot.pdf
TRINITY_DN5053_c0_g1:3143	si_a407	TRINITY_DN5053_c0_g1	3131	3152	3143	-19.80	-13.00	0.656565656565657	10.5	1-11,3152-3142;12-17,3140-3135	x-x,3141-3141[BULt];18-21,3134-3131[UP3]	....((((((.(((((((((((&)))))))))))-))))))....	GUAAGGAUGUCGAACAAGGCAA&UUGUUUUGUUU-AUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5053_c0_g1_3143_TPlot.pdf
TRINITY_DN5053_c0_g1:3144	si_a406	TRINITY_DN5053_c0_g1	3132	3153	3144	-19.80	-13.00	0.656565656565657	10.5	2-12,3152-3142;13-18,3140-3135	1-1,3153-3153[UP5];x-x,3141-3141[BULt];19-21,3134-3132[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	UAAGGAUGUCGAACAAGGCAAC&AUUGUUUUGUUU-AUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5053_c0_g1_3144_TPlot.pdf
TRINITY_DN5053_c0_g1:3145	si_a405	TRINITY_DN5053_c0_g1	3133	3154	3145	-19.80	-13.00	0.656565656565657	10	3-13,3152-3142;14-19,3140-3135	1-2,3154-3153[UP5];x-x,3141-3141[BULt];20-21,3134-3133[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	AAGGAUGUCGAACAAGGCAACG&AAUUGUUUUGUUU-AUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5053_c0_g1_3145_TPlot.pdf
TRINITY_DN5053_c0_g1:3431	si_a115	TRINITY_DN5053_c0_g1	3420	3441	3431	-30.40	-20.90	0.6875	7	1-6,3441-3436;8-16,3433-3425;18-21,3423-3420	7-7,3435-3434[AILt];17-17,3424-3424[SIL]	((((.(((((((((..((((((&))))))-.))))))))).))))	GCUGAAGAACAAGUGACGUAUU&AAUACG-AGCUUGUUUUAUAGC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN5053_c0_g1_3431_TPlot.pdf
TRINITY_DN50542_c0_g1:684	si_s76	TRINITY_DN50542_c0_g1	673	693	684	-23.60	-15.70	0.665254237288135	17	10-21,684-673	1-9,693-685[UP5]	((((((((((((.........&.........))))))))))))	AAGAAAGGAAAGUUUUAACUG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN50542_c0_g1_684_TPlot.pdf
TRINITY_DN5054_c0_g1:773	si_a455	TRINITY_DN5054_c0_g1	762	782	773	-21.10	-14.40	0.682464454976303	10.5	3-7,780-776;10-21,773-762	1-2,782-781[UP5];8-9,775-774[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GUAUUGUGUGUAUAAACAGGG&AAUUGUUGUUAUAUAUAAUAU	3	0.999995393414573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN5054_c0_g1_773_TPlot.pdf
TRINITY_DN5055_c0_g1:2488	si_a763	TRINITY_DN5055_c0_g1	2476	2497	2488	-28.80	-19.00	0.659722222222222	5	1-16,2497-2482;18-21,2479-2476	17-17,2481-2480[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	UGAACCUAGUCAGAAACUCAAA&UUUGGGUUUUUGAUUG-AUUCA	4	0.999999999908935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN5055_c0_g1_2488_TPlot.pdf
TRINITY_DN50565_c0_g1:104	si_a409	TRINITY_DN50565_c0_g1	93	113	104	-19.50	-12.90	0.661538461538462	9	1-2,113-112;4-16,110-98	3-3,111-111[SIL];17-21,97-93[UP3]	.....(((((((((((((.((&)).))))))))))))).....	GUUUCUAAAUAUAAACGAUGC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN50565_c0_g1_104_TPlot.pdf
TRINITY_DN50578_c0_g1:803	si_a319	TRINITY_DN50578_c0_g1	792	812	803	-22.40	-16.00	0.714285714285714	10	1-7,812-806;9-18,804-795	8-8,805-805[SIL];19-21,794-792[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UUAAAGAGAGUCGAGGAUGGA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999092842712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN50578_c0_g1_803_TPlot.pdf
TRINITY_DN50578_c0_g1:804	si_a318	TRINITY_DN50578_c0_g1	793	813	804	-22.50	-16.00	0.711111111111111	9.5	2-8,812-806;10-19,804-795	1-1,813-813[UP5];9-9,805-805[SIL];20-21,794-793[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UAAAGAGAGUCGAGGAUGGAC&AUUUAUCCAUGAUUUUUUUAU	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN50578_c0_g1_804_TPlot.pdf
TRINITY_DN50578_c0_g1:856	si_a404	TRINITY_DN50578_c0_g1	845	865	856	-21.70	-14.50	0.668202764976959	4.5	1-5,865-861;7-20,859-846	6-6,860-860[SIL];21-21,845-845[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	AGAAUAUAAAUAAAAAAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN50578_c0_g1_856_TPlot.pdf
TRINITY_DN5057_c0_g1:208	si_a759	TRINITY_DN5057_c0_g1	197	217	208	-32.60	-21.80	0.668711656441718	9	1-7,217-211;9-18,209-200	8-8,210-210[SIL];19-21,199-197[UP3]	...((((((((((.(((((((&))))))).))))))))))...	GAUGUCAAGGGCCAAGAGGAG&CUCCUUUGGGUUUUUGAUUGA	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5057_c0_g1_208_TPlot.pdf
TRINITY_DN5058_c0_g1:41	si_a157	TRINITY_DN5058_c0_g1	30	49	41	-29.00	-20.60	0.710344827586207	9.5	5-8,45-42;10-21,41-30	1-4,49-46[UP5];9-9,x-x[BULq]	((((((((((((-((((....&....)))).))))))))))))	GUGAAUAGGUUG-CCUUUUUC&UUUUAAGGUCAAUCUAUUCAC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a157_TRINITY_DN5058_c0_g1_41_TPlot.pdf
TRINITY_DN50593_c0_g1:646	si_a24	TRINITY_DN50593_c0_g1	636	654	646	-24.20	-16.30	0.673553719008265	5.5	1-9,654-646;11-13,645-643;15-21,642-636	10-10,x-x[BULq];14-14,x-x[BULq]	(((((((-(((-(((((((((&))))))))).))).)))))))	GUCUUGG-ACU-AAAGUAAGU&AUUUAUUUUUAGUUCUAAGAC	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN50593_c0_g1_646_TPlot.pdf
TRINITY_DN505_c0_g1:3200	si_a666	TRINITY_DN505_c0_g1	3189	3209	3200	-31.60	-20.70	0.65506329113924	8.5	1-7,3209-3203;10-15,3200-3195;17-20,3193-3190	8-9,3202-3201[SIL];16-16,3194-3194[SIL];21-21,3189-3189[UP3]	.((((.((((((..(((((((&)))))))..)))))).)))).	UAGUGCGGGAUCUUUGGGCAU&AUGCCUAUUGAUUCCUUAUUC	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN505_c0_g1_3200_TPlot.pdf
TRINITY_DN50617_c0_g1:34	si_s297	TRINITY_DN50617_c0_g1	23	45	34	-29.80	-20.00	0.671140939597315	12	1-9,45-37;10-15,34-29	x-x,36-35[BULt];16-21,28-23[UP3]	......((((((..(((((((((&)))))))))--))))))......	CGCCUCCGCAAUUCUCCGGUCGA&UCGAUUGGA--AUUGCGAAAAUU	0	0.0792336901932942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN50617_c0_g1_34_TPlot.pdf
TRINITY_DN5061_c0_g1:4197	si_a320	TRINITY_DN5061_c0_g1	4186	4206	4197	-24.40	-16.30	0.668032786885246	10.5	5-17,4202-4190;19-21,4188-4186	1-4,4206-4203[UP5];18-18,4189-4189[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GAAGGAAAAAGUCGUGGCUGC&UUAUCCAUGAUUUUUUUAUUC	4	0.999999762880908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN5061_c0_g1_4197_TPlot.pdf
TRINITY_DN5061_c0_g2:1351	si_a406	TRINITY_DN5061_c0_g2	1340	1364	1351	-19.80	-13.00	0.656565656565657	12.5	2-7,1363-1358;8-19,1353-1342	1-1,1364-1364[UP5];x-x,1357-1354[BULt];20-21,1341-1340[UP3]	..((((((((((((....((((((.&.))))))----))))))))))))..	AAUAAAUGUAAACAUAAUAGACAAA&AUUGUUU----UGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5061_c0_g2_1351_TPlot.pdf
TRINITY_DN5063_c0_g2:1978	si_a410	TRINITY_DN5063_c0_g2	1967	1987	1978	-17.80	-11.80	0.662921348314607	11	6-21,1982-1967	1-5,1987-1983[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUGUUUAGAUAUAAGAAUUC&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5063_c0_g2_1978_TPlot.pdf
TRINITY_DN5063_c0_g2:428	si_s77	TRINITY_DN5063_c0_g2	416	437	428	-25.50	-17.50	0.686274509803922	14	6-12,432-426;13-21,424-416	1-5,437-433[UP5];x-x,425-425[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	GAGGAAGGGCAAAGGGAUUACU&UUUUUUUUCUUU-CCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5063_c0_g2_428_TPlot.pdf
TRINITY_DN5064_c0_g1:1073	si_s11	TRINITY_DN5064_c0_g1	1062	1081	1073	-23.60	-18.40	0.779661016949152	5.5	2-4,1080-1078;6-21,1077-1062	1-1,1081-1081[UP5];5-5,x-x[BULq]	((((((((((((((((-(((.&.))).))))))))))))))))	AUCAAUGUAGUAGUAG-AAGA&ACUUAUUAUUACUAUAUUGAU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN5064_c0_g1_1073_TPlot.pdf
TRINITY_DN5064_c0_g1:235	si_a862	TRINITY_DN5064_c0_g1	219	244	235	-22.70	-15.30	0.674008810572687	8	1-14,244-231;15-20,225-220	x-x,230-226[BULt];21-21,219-219[UP3]	.((((((.....((((((((((((((&))))))))))))))-----)))))).	GGAAUUUUAAUAUUGAUAAUUGGAUU&AAUCCAAUUAUUAA-----AGAUUUA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN5064_c0_g1_235_TPlot.pdf
TRINITY_DN5064_c0_g1:546	si_a142	TRINITY_DN5064_c0_g1	535	555	546	-23.50	-16.00	0.680851063829787	13	7-20,549-536	1-6,555-550[UP5];21-21,535-535[UP3]	.((((((((((((((......&......)))))))))))))).	GUAAAACAAUAACGAAAUGUC&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999404123	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5064_c0_g1_546_TPlot.pdf
TRINITY_DN5064_c0_g1:547	si_a141	TRINITY_DN5064_c0_g1	536	556	547	-23.80	-15.80	0.663865546218487	13.5	8-21,549-536	1-7,556-550[UP5]	((((((((((((((.......&.......))))))))))))))	UAAAACAAUAACGAAAUGUCA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999996637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN5064_c0_g1_547_TPlot.pdf
TRINITY_DN5065_c0_g1:845	si_a319	TRINITY_DN5065_c0_g1	833	854	845	-22.40	-17.70	0.790178571428571	2.5	1-16,854-839;17-21,837-833	x-x,838-838[BULt]	(((((.((((((((((((((((&))))))))))))))))-)))))	AAUGAUAAAAAUUAUGGAUAAA&UUUAUCCAUGAUUUUU-UUAUU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5065_c0_g1_845_TPlot.pdf
TRINITY_DN5067_c0_g1:952	si_a410	TRINITY_DN5067_c0_g1	941	961	952	-17.80	-12.50	0.702247191011236	8	3-18,959-944	1-2,961-960[UP5];19-21,943-941[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAAUUUAAAUGUAAAUAACG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999734700928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5067_c0_g1_952_TPlot.pdf
TRINITY_DN5068_c1_g2:699	si_s78	TRINITY_DN5068_c1_g2	688	708	699	-26.20	-19.10	0.729007633587786	4	2-12,707-697;15-21,694-688	1-1,708-708[UP5];13-14,696-695[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AGAAGAAUUGAAGGAAAAAAG&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5068_c1_g2_699_TPlot.pdf
TRINITY_DN5068_c1_g2:700	si_s77	TRINITY_DN5068_c1_g2	689	709	700	-25.50	-19.70	0.772549019607843	4	1-13,709-697;16-21,694-689	14-15,696-695[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	GAAGAAUUGAAGGAAAAAAGA&UUUUUUUUCUUUCCUUUCUUC	4	0.999999992133814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5068_c1_g2_700_TPlot.pdf
TRINITY_DN5068_c1_g2:701	si_s76	TRINITY_DN5068_c1_g2	690	710	701	-23.60	-16.50	0.699152542372881	5	2-14,709-697;17-21,694-690	1-1,710-710[UP5];15-16,696-695[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AAGAAUUGAAGGAAAAAAGAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5068_c1_g2_701_TPlot.pdf
TRINITY_DN5068_c1_g2:702	si_s75	TRINITY_DN5068_c1_g2	691	711	702	-24.00	-15.60	0.65	7	3-15,709-697;18-21,694-691	1-2,711-710[UP5];16-17,696-695[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AGAAUUGAAGGAAAAAAGAAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5068_c1_g2_702_TPlot.pdf
TRINITY_DN5068_c1_g2:708	si_s69	TRINITY_DN5068_c1_g2	697	718	708	-23.40	-16.40	0.700854700854701	8.5	3-7,716-712;9-21,709-697	1-2,718-717[UP5];8-8,711-710[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GAAGGAAAAAAGAAAAGAAGCA&AACUUCU-AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5068_c1_g2_708_TPlot.pdf
TRINITY_DN5068_c1_g4:130	si_a356	TRINITY_DN5068_c1_g4	113	139	130	-26.90	-18.90	0.702602230483271	15.5	3-10,137-130;11-21,123-113	1-2,139-138[UP5];x-x,129-124[BULt]	(((((((((((......((((((((..&..))))))))------)))))))))))	AUCCGGUCAAAACUUGUAUAGAAUUUU&UUAAUUCUAU------UUUGAUCGGAU	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN5068_c1_g4_130_TPlot.pdf
TRINITY_DN5068_c1_g4:185	si_a328	TRINITY_DN5068_c1_g4	173	194	185	-30.10	-19.60	0.651162790697674	6.5	1-3,194-192;5-12,190-183;13-20,181-174	4-4,191-191[SIL];x-x,182-182[BULt];21-21,173-173[UP3]	.((((((((.((((((((.(((&))).))))))))-)))))))).	AGGACAAGGAAAUAAAGACAUU&GAUUUUUUUAUU-CCUUGUCCC	2	0.999994892393748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN5068_c1_g4_185_TPlot.pdf
TRINITY_DN5068_c1_g4:186	si_a327	TRINITY_DN5068_c1_g4	174	195	186	-28.40	-20.40	0.71830985915493	5	1-4,195-192;6-13,190-183;14-21,181-174	5-5,191-191[SIL];x-x,182-182[BULt]	((((((((.((((((((.((((&)))).))))))))-))))))))	GGACAAGGAAAUAAAGACAUUA&UGAUUUUUUUAUU-CCUUGUCC	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN5068_c1_g4_186_TPlot.pdf
TRINITY_DN5068_c1_g4:187	si_a326	TRINITY_DN5068_c1_g4	175	196	187	-26.20	-18.10	0.690839694656489	5	1-5,196-192;7-14,190-183;15-21,181-175	6-6,191-191[SIL];x-x,182-182[BULt]	(((((((.((((((((.(((((&))))).))))))))-)))))))	GACAAGGAAAUAAAGACAUUAU&AUGAUUUUUUUAUU-CCUUGUC	3	0.999992358580222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5068_c1_g4_187_TPlot.pdf
TRINITY_DN5068_c1_g4:2736	si_s77	TRINITY_DN5068_c1_g4	2719	2745	2736	-25.50	-17.70	0.694117647058824	13.5	1-11,2745-2735;12-17,2729-2724;18-21,2722-2719	x-x,2734-2730[BULt];x-x,2723-2723[BULt]	((((.((((((.....(((((((((((&)))))))))))-----))))))-))))	GAGGAAAAGGAACAAAGAGAAAAAGAA&UUUUUUUUCUU-----UCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5068_c1_g4_2736_TPlot.pdf
TRINITY_DN5068_c1_g4:2964	si_s80	TRINITY_DN5068_c1_g4	2947	2973	2964	-28.20	-19.20	0.680851063829787	9	1-10,2973-2964;11-14,2962-2959;15-21,2953-2947	x-x,2963-2963[BULt];x-x,2958-2954[BULt]	(((((((.....((((.((((((((((&))))))))))-))))-----)))))))	GAGGAAGCUAAAAGAGUGAAAGAGAAA&UUUUUCUUUC-CUUU-----CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5068_c1_g4_2964_TPlot.pdf
TRINITY_DN5068_c1_g4:321	si_s86	TRINITY_DN5068_c1_g4	310	334	321	-32.90	-22.00	0.668693009118541	13	1-7,334-328;8-18,323-313	x-x,327-324[BULt];19-21,312-310[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UUGGAAGAAGGAGAACUCGAGGAAA&UUUCCUU----UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5068_c1_g4_321_TPlot.pdf
TRINITY_DN50698_c0_g1:36	si_s894	TRINITY_DN50698_c0_g1	25	45	36	-29.10	-20.20	0.694158075601375	10.5	3-16,43-30	1-2,45-44[UP5];17-21,29-25[UP3]	.....((((((((((((((..&..)))))))))))))).....	AGCAGGGAGAGAAAGCUUGCU&AAUAGGCUUUCUCUUCAAUUU	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN50698_c0_g1_36_TPlot.pdf
TRINITY_DN50698_c0_g1:37	si_a182	TRINITY_DN50698_c0_g1	26	47	37	-31.80	-21.96	0.690566037735849	15	1-4,47-44;11-21,36-26	5-10,43-37[AILt]	(((((((((((.......((((&))))-......)))))))))))	GCAGGGAGAGAAAGCUUGCUAG&CUAG-AUAAUAUCUUUCCCUGU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN50698_c0_g1_37_TPlot.pdf
TRINITY_DN50698_c0_g1:55	si_a75	TRINITY_DN50698_c0_g1	44	64	55	-21.30	-15.10	0.708920187793427	11.5	1-15,64-50	16-21,49-44[UP3]	......(((((((((((((((&)))))))))))))))......	CUAGGCGUGAGGAGCGGUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN50698_c0_g1_55_TPlot.pdf
TRINITY_DN50698_c0_g1:60	si_a70	TRINITY_DN50698_c0_g1	49	72	60	-23.90	-16.60	0.694560669456067	13	1-5,72-68;6-20,64-50	x-x,67-65[BULt];21-21,49-49[UP3]	.(((((((((((((((...(((((&)))))---))))))))))))))).	CGUGAGGAGCGGUUUGCACAGGGA&UCUUU---CAAAUUGUUUUUCAUU	3	0.999998789065877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN50698_c0_g1_60_TPlot.pdf
TRINITY_DN50698_c0_g1:78	si_s898	TRINITY_DN50698_c0_g1	67	87	78	-30.70	-20.00	0.651465798045603	8.5	2-13,86-75;16-18,72-70	1-1,87-87[UP5];14-15,74-73[SIL];19-21,69-67[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	CAGGGACCUGGAGAGAAGGCA&GGCUUUCUCUUCAAUUUCAAU	4	0.999999999439905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN50698_c0_g1_78_TPlot.pdf
TRINITY_DN5069_c0_g1:1327	si_s66	TRINITY_DN5069_c0_g1	1316	1336	1327	-26.30	-18.10	0.688212927756654	8	2-9,1335-1328;12-19,1325-1318	1-1,1336-1336[UP5];10-11,1327-1326[SIL];20-21,1317-1316[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	AAAGAGAAAAGUGAAGUUGCA&AGCAACUUCUAUUUUUUUUCU	2	0.998684840499939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN5069_c0_g1_1327_TPlot.pdf
TRINITY_DN5069_c0_g6:64	si_s100	TRINITY_DN5069_c0_g6	52	73	64	-33.70	-25.80	0.765578635014837	6	2-12,72-62;13-20,60-53	1-1,73-73[UP5];x-x,61-61[BULt];21-21,52-52[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UUUUUCCAAUUCCGAGGUGAAA&CUUCGCUUCGGA-UUGGAAAAU	0	0.00896491987738746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN5069_c0_g6_64_TPlot.pdf
TRINITY_DN5070_c1_g1:2954	si_a148	TRINITY_DN5070_c1_g1	2942	2963	2954	-30.30	-19.70	0.65016501650165	11	3-13,2961-2951;16-19,2947-2944	1-2,2963-2962[UP5];14-15,2950-2948[AILt];20-21,2943-2942[UP3]	..((((...(((((((((((..&..)))))))))))-..))))..	ACGGCCGCAGAAACAGCAGCAA&UCGUUGUUGUUUU-AAGGUCAA	3	0.999999994099649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN5070_c1_g1_2954_TPlot.pdf
TRINITY_DN5070_c1_g1:3114	si_a317	TRINITY_DN5070_c1_g1	3103	3123	3114	-24.30	-16.70	0.687242798353909	7	1-5,3123-3119;7-12,3117-3112;14-20,3110-3104	6-6,3118-3118[SIL];13-13,3111-3111[SIL];21-21,3103-3103[UP3]	.(((((((.((((((.(((((&))))).)))))).))))))).	GAAAGAGAGCAUGGAGGGAUC&GAUUUAUCCAUGAUUUUUUUA	2	0.999763926147321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN5070_c1_g1_3114_TPlot.pdf
TRINITY_DN5073_c1_g1:1629	si_a21	TRINITY_DN5073_c1_g1	1614	1638	1629	-24.30	-16.10	0.662551440329218	8.5	1-3,1638-1636;5-16,1634-1623;17-20,1618-1615	4-4,1635-1635[SIL];x-x,1622-1619[BULt];21-21,1614-1614[UP3]	.((((....((((((((((((.(((&))).))))))))))))----)))).	AUAGAACUAGCUAGAAAUAAAGAGG&CCUAUUUAUUUUUAGU----UCUAA	4	0.999999839810467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN5073_c1_g1_1629_TPlot.pdf
TRINITY_DN5074_c0_g1:480	si_s82	TRINITY_DN5074_c0_g1	469	490	480	-28.90	-18.90	0.653979238754325	9.5	2-8,489-483;10-21,480-469	1-1,490-490[UP5];9-9,482-481[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	AAGAAGGAGGAAUUGGAGGAGG&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5074_c0_g1_480_TPlot.pdf
TRINITY_DN5074_c0_g1:913	si_a545	TRINITY_DN5074_c0_g1	902	921	913	-28.10	-19.00	0.676156583629893	8	1-6,921-916;9-10,914-913;12-21,911-902	7-8,915-915[AILq];11-11,912-912[SIL]	((((((((((.((.-((((((&))))))..)).))))))))))	AUAGAGAGAUUGAG-GGACCG&CGGUUCAAUCUAUUUCUUUAU	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN5074_c0_g1_913_TPlot.pdf
TRINITY_DN50754_c0_g1:102	si_a19	TRINITY_DN50754_c0_g1	92	111	102	-27.00	-17.70	0.655555555555556	8	1-7,111-105;9-15,103-97;17-20,96-93	8-8,104-104[SIL];16-16,x-x[BULq];21-21,92-92[UP3]	.((((-(((((((.(((((((&))))))).))))))).)))).	UGAGC-GAAAAUGCGUGGGCU&AGCCUAUUUAUUUUUAGUUCU	0	0.302821748397542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN50754_c0_g1_102_TPlot.pdf
TRINITY_DN5075_c0_g1:434	si_s89	TRINITY_DN5075_c0_g1	417	443	434	-35.30	-27.00	0.764872521246459	8.5	1-15,443-429;16-20,422-418	x-x,428-423[BULt];21-21,417-417[UP3]	.(((((......(((((((((((((((&)))))))))))))))------))))).	AGAAGCAAUUAAGGAGAAGAAGGAAGG&CCUUUCUUCUUCUUC------GCUUCG	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5075_c0_g1_434_TPlot.pdf
TRINITY_DN5075_c0_g1:436	si_s87	TRINITY_DN5075_c0_g1	419	445	436	-32.90	-23.40	0.711246200607903	10.5	3-17,443-429;18-21,422-419	1-2,445-444[UP5];x-x,428-423[BULt]	((((......(((((((((((((((..&..)))))))))))))))------))))	AAGCAAUUAAGGAGAAGAAGGAAGGCU&UUCCUUUCUUCUUCUUC------GCUU	3	0.999999993471148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5075_c0_g1_436_TPlot.pdf
TRINITY_DN5075_c0_g1:437	si_s86	TRINITY_DN5075_c0_g1	426	446	437	-32.90	-22.60	0.68693009118541	9.5	4-18,443-429	1-3,446-444[UP5];19-21,428-426[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAAGGAGAAGAAGGAAGGCUU&UUUCCUUUCUUCUUCUUCGCU	3	0.99999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5075_c0_g1_437_TPlot.pdf
TRINITY_DN5075_c0_g1:438	si_s85	TRINITY_DN5075_c0_g1	427	447	438	-33.80	-22.60	0.668639053254438	10.5	5-19,443-429	1-4,447-444[UP5];20-21,428-427[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAGGAGAAGAAGGAAGGCUUG&CUUUCCUUUCUUCUUCUUCGC	2	0.999999999311305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5075_c0_g1_438_TPlot.pdf
TRINITY_DN5075_c0_g1:439	si_s84	TRINITY_DN5075_c0_g1	428	449	439	-32.30	-23.70	0.73374613003096	9.5	1-3,449-447;6-20,443-429	4-5,446-444[AILt];21-21,428-428[UP3]	.(((((((((((((((...(((&)))-..))))))))))))))).	AGGAGAAGAAGGAAGGCUUGGA&UCU-UUCCUUUCUUCUUCUUCG	2	0.999495604960315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5075_c0_g1_439_TPlot.pdf
TRINITY_DN5075_c0_g1:440	si_s83	TRINITY_DN5075_c0_g1	429	450	440	-30.90	-23.50	0.760517799352751	9.5	2-4,449-447;7-21,443-429	1-1,450-450[UP5];5-6,446-444[AILt]	(((((((((((((((...(((.&.)))-..)))))))))))))))	GGAGAAGAAGGAAGGCUUGGAU&UUCU-UUCCUUUCUUCUUCUUC	2	0.998684840499939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5075_c0_g1_440_TPlot.pdf
TRINITY_DN5075_c0_g1:441	si_s82	TRINITY_DN5075_c0_g1	430	451	441	-28.90	-21.20	0.73356401384083	11.5	3-5,449-447;8-21,443-430	1-2,451-450[UP5];6-7,446-444[AILt]	((((((((((((((...(((..&..)))-..))))))))))))))	GAGAAGAAGGAAGGCUUGGAUU&UUUCU-UUCCUUUCUUCUUCUU	2	0.999999835427854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5075_c0_g1_441_TPlot.pdf
TRINITY_DN5075_c0_g1:442	si_s600	TRINITY_DN5075_c0_g1	431	451	442	-28.20	-19.48	0.690780141843972	8.5	1-9,451-443;13-20,439-432	10-12,442-440[SIL];21-21,431-431[UP3]	.((((((((...(((((((((&)))))))))...)))))))).	AGAAGAAGGAAGGCUUGGAUU&AAUCCAAGCGAAUCUUUUUUA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN5075_c0_g1_442_TPlot.pdf
TRINITY_DN5075_c0_g1:443	si_s599	TRINITY_DN5075_c0_g1	432	452	443	-27.80	-19.18	0.689928057553957	7.5	2-10,451-443;14-21,439-432	1-1,452-452[UP5];11-13,442-440[SIL]	((((((((...(((((((((.&.)))))))))...))))))))	GAAGAAGGAAGGCUUGGAUUA&AAAUCCAAGCGAAUCUUUUUU	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN5075_c0_g1_443_TPlot.pdf
TRINITY_DN507_c0_g1:3737	si_s313	TRINITY_DN507_c0_g1	3726	3748	3737	-30.80	-21.30	0.691558441558442	7.5	1-7,3748-3742;8-19,3739-3728	x-x,3741-3740[BULt];20-21,3727-3726[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	AGGAUAAGGAGGACCUAGAAUUU&AAAUUCU--GUCCUUCUUGUUAC	4	0.99892197092847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN507_c0_g1_3737_TPlot.pdf
TRINITY_DN507_c0_g1:3739	si_s311	TRINITY_DN507_c0_g1	3728	3750	3739	-30.60	-21.10	0.689542483660131	8.5	3-9,3748-3742;10-21,3739-3728	1-2,3750-3749[UP5];x-x,3741-3740[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	GAUAAGGAGGACCUAGAAUUUAU&GAAAAUUCU--GUCCUUCUUGUU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN507_c0_g1_3739_TPlot.pdf
TRINITY_DN507_c0_g1:4409	si_a785	TRINITY_DN507_c0_g1	4398	4418	4409	-25.90	-20.40	0.787644787644788	5.5	1-11,4418-4408;13-16,4406-4403;18-21,4401-4398	12-12,4407-4407[SIL];17-17,4402-4402[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	GAGAUUGGGCAGAUAGAAGAG&CUCUUCUAUUUUUCUAUUUUC	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN507_c0_g1_4409_TPlot.pdf
TRINITY_DN507_c0_g1:4418	si_s70	TRINITY_DN507_c0_g1	4404	4427	4418	-25.80	-16.90	0.655038759689922	8.5	1-14,4427-4414;15-17,4410-4408;19-21,4406-4404	x-x,4413-4411[BULt];18-18,4407-4407[SIL]	(((.(((...((((((((((((((&))))))))))))))---))).)))	GGGCAGAUAGAAGAGGAUGGAAGU&ACUUCUAUUUUUUU---UCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN507_c0_g1_4418_TPlot.pdf
TRINITY_DN50817_c0_g1:549	si_a413	TRINITY_DN50817_c0_g1	538	558	549	-18.40	-13.60	0.739130434782609	6	3-19,556-540	1-2,558-557[UP5];20-21,539-538[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CAAUUUAUUUAAAUAUGAAAU&UGUUUAUAUUUAAAUAAAUAU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN50817_c0_g1_549_TPlot.pdf
TRINITY_DN50817_c0_g1:550	si_a412	TRINITY_DN50817_c0_g1	539	559	550	-18.30	-13.60	0.743169398907104	7	4-20,556-540	1-3,559-557[UP5];21-21,539-539[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAUUUAUUUAAAUAUGAAAUC&UUGUUUAUAUUUAAAUAAAUA	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN50817_c0_g1_550_TPlot.pdf
TRINITY_DN50817_c0_g1:551	si_a411	TRINITY_DN50817_c0_g1	540	560	551	-17.90	-13.30	0.743016759776536	8	5-21,556-540	1-4,560-557[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUUUAUUUAAAUAUGAAAUCU&UUUGUUUAUAUUUAAAUAAAU	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN50817_c0_g1_551_TPlot.pdf
TRINITY_DN5081_c1_g1:1383	si_a411	TRINITY_DN5081_c1_g1	1372	1392	1383	-17.90	-12.10	0.675977653631285	8.5	1-14,1392-1379	15-21,1378-1372[UP3]	.......((((((((((((((&)))))))))))))).......	GCCAUCCUAAAUAUAGACAAG&UUUGUUUAUAUUUAAAUAAAU	2	0.999990945574018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN5081_c1_g1_1383_TPlot.pdf
TRINITY_DN5081_c1_g1:1384	si_a410	TRINITY_DN5081_c1_g1	1373	1393	1384	-17.80	-12.20	0.685393258426966	9	2-15,1392-1379	1-1,1393-1393[UP5];16-21,1378-1373[UP3]	......((((((((((((((.&.))))))))))))))......	CCAUCCUAAAUAUAGACAAGC&UUUUGUUUAUAUUUAAAUAAA	0	0.396977216196534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5081_c1_g1_1384_TPlot.pdf
TRINITY_DN5081_c1_g1:1387	si_a407	TRINITY_DN5081_c1_g1	1376	1400	1387	-19.80	-12.90	0.651515151515151	13	1-4,1400-1397;5-18,1392-1379	x-x,1396-1393[BULt];19-21,1378-1376[UP3]	...((((((((((((((....((((&))))----))))))))))))))...	UCCUAAAUAUAGACAAGCCCUACAA&UUGU----UUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5081_c1_g1_1387_TPlot.pdf
TRINITY_DN5081_c1_g1:1388	si_a406	TRINITY_DN5081_c1_g1	1377	1401	1388	-19.80	-12.90	0.651515151515151	13	2-5,1400-1397;6-19,1392-1379	1-1,1401-1401[UP5];x-x,1396-1393[BULt];20-21,1378-1377[UP3]	..((((((((((((((....((((.&.))))----))))))))))))))..	CCUAAAUAUAGACAAGCCCUACAAA&AUUGU----UUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5081_c1_g1_1388_TPlot.pdf
TRINITY_DN5081_c1_g1:1546	si_s199	TRINITY_DN5081_c1_g1	1535	1553	1546	-31.20	-20.60	0.66025641025641	9	3-6,1551-1548;9-21,1547-1535	1-2,1553-1552[UP5];7-8,x-x[BULq]	(((((((((((((--((((..&..))))..)))))))))))))	GCGACUGGUGCAU--CAAAUG&AUUUUGGAAUGUACCAGUUGU	2	0.99258153146589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN5081_c1_g1_1546_TPlot.pdf
TRINITY_DN5081_c1_g1:363	si_s179	TRINITY_DN5081_c1_g1	351	372	363	-35.10	-24.30	0.692307692307692	10	3-12,370-361;13-13,359-359;16-21,356-351	1-2,372-371[UP5];x-x,360-360[BULt];14-15,358-357[SIL]	((((((..(.((((((((((..&..))))))))))-)..))))))	UGAUCGGUGUCUUGGGCGUCAU&AAGAUGCCCGAG-UAACGAUUA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s179_TRINITY_DN5081_c1_g1_363_TPlot.pdf
TRINITY_DN5081_c1_g1:532	si_a219	TRINITY_DN5081_c1_g1	521	541	532	-25.10	-16.60	0.661354581673307	13	6-18,536-524	1-5,541-537[UP5];19-21,523-521[UP3]	...(((((((((((((.....&.....)))))))))))))...	UACGAAACAUGGGUUUUGGGU&UAAUUAAACUCAUGUUUCUAU	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN5081_c1_g1_532_TPlot.pdf
TRINITY_DN5083_c0_g1:6316	si_a122	TRINITY_DN5083_c0_g1	6301	6325	6316	-29.00	-19.90	0.686206896551724	11	1-11,6325-6315;12-14,6311-6309;17-21,6305-6301	x-x,6314-6312[BULt];15-16,6308-6306[AILt]	(((((...(((...(((((((((((&)))))))))))---)))-..)))))	UACUAGUGGCUUUCAUAGAGCAAGC&GCUUGUUUUAU---AGC-AAUAGUA	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN5083_c0_g1_6316_TPlot.pdf
TRINITY_DN5083_c0_g1:6400	si_a73	TRINITY_DN5083_c0_g1	6389	6409	6400	-21.90	-14.60	0.666666666666667	8.5	1-9,6409-6401;11-18,6399-6392	10-10,6400-6400[SIL];19-21,6391-6389[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUCGAUGGGAACCAGUUUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999986083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN5083_c0_g1_6400_TPlot.pdf
TRINITY_DN5083_c0_g1:6401	si_a72	TRINITY_DN5083_c0_g1	6390	6410	6401	-21.90	-14.80	0.675799086757991	8.5	2-10,6409-6401;12-19,6399-6392	1-1,6410-6410[UP5];11-11,6400-6400[SIL];20-21,6391-6390[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UCGAUGGGAACCAGUUUGGAU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999856589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN5083_c0_g1_6401_TPlot.pdf
TRINITY_DN5083_c0_g1:7371	si_a466	TRINITY_DN5083_c0_g1	7360	7380	7371	-21.50	-15.30	0.711627906976744	8.5	3-18,7378-7363	1-2,7380-7379[UP5];19-21,7362-7360[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGUAUGAUUGCAUAUUGUAAA&UAUAUAAUAUGUAAUUAUUGU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN5083_c0_g1_7371_TPlot.pdf
TRINITY_DN5083_c0_g1:7374	si_a463	TRINITY_DN5083_c0_g1	7363	7383	7374	-19.70	-15.30	0.776649746192894	11	6-21,7378-7363	1-5,7383-7379[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGAUUGCAUAUUGUAAAAUA&UUAUAUAUAAUAUGUAAUUAU	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5083_c0_g1_7374_TPlot.pdf
TRINITY_DN5084_c0_g1:1327	si_s166	TRINITY_DN5084_c0_g1	1319	1336	1327	-42.40	-27.70	0.653301886792453	6	1-9,1336-1328;11-13,1326-1324;17-21,1323-1319	10-10,1327-1327[SIL];14-16,x-x[BULq]	(((((---(((.(((((((((&))))))))).)))...)))))	GGCAU---UAUGCCUGGCCAU&AUGGCCAGGGGUAAAGAUGCC	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s166_TRINITY_DN5084_c0_g1_1327_TPlot.pdf
TRINITY_DN5084_c0_g1:1502	si_a761	TRINITY_DN5084_c0_g1	1490	1512	1502	-30.10	-20.00	0.664451827242525	6.5	1-2,1512-1511;3-10,1509-1502;11-16,1500-1495;18-21,1493-1490	x-x,1510-1510[BULt];x-x,1501-1501[BULt];17-17,1494-1494[SIL]	((((.((((((.((((((((.((&))-))))))))-)))))).))))	AGUCCAUCAAACAACCCAAGUGG&CC-UUUGGGUU-UUUGAUUGAUU	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN5084_c0_g1_1502_TPlot.pdf
TRINITY_DN5084_c0_g1:1673	si_s808	TRINITY_DN5084_c0_g1	1662	1683	1673	-28.60	-19.30	0.674825174825175	10.5	2-6,1682-1678;7-17,1676-1666	1-1,1683-1683[UP5];x-x,1677-1677[BULt];18-21,1665-1662[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	AAUUGGAGGGGUGGCUGAAGAG&AUCUUC-GUUACCUUUUCUUAA	3	0.99999998894844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5084_c0_g1_1673_TPlot.pdf
TRINITY_DN5084_c0_g1:1674	si_s807	TRINITY_DN5084_c0_g1	1663	1684	1674	-28.90	-19.30	0.667820069204152	11.5	3-7,1682-1678;8-18,1676-1666	1-2,1684-1683[UP5];x-x,1677-1677[BULt];19-21,1665-1663[UP3]	...(((((((((((.(((((..&..)))))-)))))))))))...	AUUGGAGGGGUGGCUGAAGAGC&UAUCUUC-GUUACCUUUUCUUA	3	0.999999998707314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5084_c0_g1_1674_TPlot.pdf
TRINITY_DN5084_c0_g1:1678	si_s804	TRINITY_DN5084_c0_g1	1666	1687	1678	-27.90	-18.90	0.67741935483871	14	6-10,1682-1678;11-21,1676-1666	1-5,1687-1683[UP5];x-x,1677-1677[BULt]	(((((((((((.(((((.....&.....)))))-)))))))))))	GGAGGGGUGGCUGAAGAGCAGG&UUUUAUCUUC-GUUACCUUUUC	3	0.999999978003951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5084_c0_g1_1678_TPlot.pdf
TRINITY_DN5084_c0_g1:2150	si_s268	TRINITY_DN5084_c0_g1	2139	2161	2150	-26.10	-17.70	0.67816091954023	9	1-6,2161-2156;7-16,2153-2144	x-x,2155-2154[BULt];17-21,2143-2139[UP3]	.....((((((((((..((((((&))))))--)))))))))).....	AAAAAGUCGAUUUUUAAUUGAGU&ACUCAA--AAAAAUCGACAUAAU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s268_TRINITY_DN5084_c0_g1_2150_TPlot.pdf
TRINITY_DN5084_c0_g1:2151	si_s267	TRINITY_DN5084_c0_g1	2140	2162	2151	-26.40	-18.80	0.712121212121212	8	1-7,2162-2156;8-17,2153-2144	x-x,2155-2154[BULt];18-21,2143-2140[UP3]	....((((((((((..(((((((&)))))))--))))))))))....	AAAAGUCGAUUUUUAAUUGAGUA&UACUCAA--AAAAAUCGACAUAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s267_TRINITY_DN5084_c0_g1_2151_TPlot.pdf
TRINITY_DN5084_c0_g1:2152	si_s266	TRINITY_DN5084_c0_g1	2141	2163	2152	-26.40	-19.00	0.71969696969697	8	2-8,2162-2156;9-18,2153-2144	1-1,2163-2163[UP5];x-x,2155-2154[BULt];19-21,2143-2141[UP3]	...((((((((((..(((((((.&.)))))))--))))))))))...	AAAGUCGAUUUUUAAUUGAGUAU&UUACUCAA--AAAAAUCGACAUA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s266_TRINITY_DN5084_c0_g1_2152_TPlot.pdf
TRINITY_DN5084_c0_g1:2156	si_s264	TRINITY_DN5084_c0_g1	2143	2165	2156	-26.30	-19.00	0.722433460076046	10	4-10,2162-2156;11-20,2153-2144	1-3,2165-2163[UP5];x-x,2155-2154[BULt];21-21,2143-2143[UP3]	.((((((((((..(((((((...&...)))))))--)))))))))).	AGUCGAUUUUUAAUUGAGUAUUU&UAUUACUCAA--AAAAAUCGACA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s264_TRINITY_DN5084_c0_g1_2156_TPlot.pdf
TRINITY_DN5084_c0_g1:2157	si_s263	TRINITY_DN5084_c0_g1	2144	2166	2157	-25.80	-18.50	0.717054263565891	11	5-11,2162-2156;12-21,2153-2144	1-4,2166-2163[UP5];x-x,2155-2154[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	GUCGAUUUUUAAUUGAGUAUUUA&AUAUUACUCAA--AAAAAUCGAC	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s263_TRINITY_DN5084_c0_g1_2157_TPlot.pdf
TRINITY_DN5084_c0_g1:272	si_s75	TRINITY_DN5084_c0_g1	261	281	272	-24.00	-15.60	0.65	9	1-6,281-276;9-18,273-264;20-21,262-261	7-8,275-274[SIL];19-19,263-263[SIL]	((.((((((((((..((((((&))))))..)))))))))).))	GGUGAGGAGAGGACUGAAAUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5084_c0_g1_272_TPlot.pdf
TRINITY_DN5084_c0_g1:273	si_s79	TRINITY_DN5084_c0_g1	262	282	273	-26.20	-17.80	0.679389312977099	12	4-7,279-276;10-19,273-264	1-3,282-280[UP5];8-9,275-274[SIL];20-21,263-262[UP3]	..((((((((((..((((...&...))))..))))))))))..	GUGAGGAGAGGACUGAAAUGA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5084_c0_g1_273_TPlot.pdf
TRINITY_DN5084_c0_g1:274	si_s78	TRINITY_DN5084_c0_g1	263	283	274	-26.20	-17.80	0.679389312977099	13	5-8,279-276;11-20,273-264	1-4,283-280[UP5];9-10,275-274[SIL];21-21,263-263[UP3]	.((((((((((..((((....&....))))..)))))))))).	UGAGGAGAGGACUGAAAUGAU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5084_c0_g1_274_TPlot.pdf
TRINITY_DN5084_c0_g1:275	si_s77	TRINITY_DN5084_c0_g1	264	284	275	-25.50	-17.40	0.68235294117647	14	6-9,279-276;12-21,273-264	1-5,284-280[UP5];10-11,275-274[SIL]	((((((((((..((((.....&.....))))..))))))))))	GAGGAGAGGACUGAAAUGAUU&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5084_c0_g1_275_TPlot.pdf
TRINITY_DN5084_c0_g1:357	si_s77	TRINITY_DN5084_c0_g1	346	366	357	-25.50	-18.60	0.729411764705882	13.5	6-9,361-358;12-21,355-346	1-5,366-362[UP5];10-11,357-356[SIL]	((((((((((..((((.....&.....))))..))))))))))	GAAGAGAGGAUUGAAAUGAUU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5084_c0_g1_357_TPlot.pdf
TRINITY_DN5084_c0_g1:370	si_a627	TRINITY_DN5084_c0_g1	350	379	370	-29.50	-19.40	0.657627118644068	23	1-11,379-369;12-21,359-350	x-x,368-360[BULt]	((((((((((.........(((((((((((&)))))))))))---------))))))))))	AGAGGAUUGAAAUGAUUUCUAUAGUGCGCC&GGCGUAUUAUG---------UCGAUUUUUU	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5084_c0_g1_370_TPlot.pdf
TRINITY_DN5084_c0_g1:987	si_a114	TRINITY_DN5084_c0_g1	976	996	987	-27.90	-18.30	0.655913978494624	10.5	4-12,993-985;14-19,983-978	1-3,996-994[UP5];13-13,984-984[SIL];20-21,977-976[UP3]	..((((((.(((((((((...&...))))))))).))))))..	CCGUAAAAGAGGCUCGUGAUG&AAAUACGAGCUUGUUUUAUAG	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN5084_c0_g1_987_TPlot.pdf
TRINITY_DN5084_c0_g1:988	si_a113	TRINITY_DN5084_c0_g1	977	997	988	-26.20	-18.30	0.698473282442748	11.5	5-13,993-985;15-20,983-978	1-4,997-994[UP5];14-14,984-984[SIL];21-21,977-977[UP3]	.((((((.(((((((((....&....))))))))).)))))).	CGUAAAAGAGGCUCGUGAUGC&AAAAUACGAGCUUGUUUUAUA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN5084_c0_g1_988_TPlot.pdf
TRINITY_DN5084_c0_g1:989	si_a112	TRINITY_DN5084_c0_g1	978	998	989	-26.20	-18.10	0.690839694656489	12	6-14,993-985;16-21,983-978	1-5,998-994[UP5];15-15,984-984[SIL]	((((((.(((((((((.....&.....))))))))).))))))	GUAAAAGAGGCUCGUGAUGCU&UAAAAUACGAGCUUGUUUUAU	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN5084_c0_g1_989_TPlot.pdf
TRINITY_DN50875_c0_g1:24	si_s74	TRINITY_DN50875_c0_g1	14	33	24	-25.00	-16.60	0.664	4	2-14,32-20;16-20,19-15	1-1,33-33[UP5];15-15,x-x[BULq];21-21,14-14[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	AAAAGG-AAGAAAAAGAAUAA&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN50875_c0_g1_24_TPlot.pdf
TRINITY_DN50875_c0_g1:315	si_a343	TRINITY_DN50875_c0_g1	305	324	315	-28.80	-20.30	0.704861111111111	6	3-15,322-310;18-21,308-305	1-2,324-323[UP5];16-17,309-309[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	GGAAG-GAUAUUUUCGGGAAG&UGUCCCGAAAAUAUUAAUUCU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN50875_c0_g1_315_TPlot.pdf
TRINITY_DN50875_c0_g1:316	si_a342	TRINITY_DN50875_c0_g1	306	325	316	-28.20	-19.20	0.680851063829787	7.5	4-16,322-310;19-21,308-306	1-3,325-323[UP5];17-18,309-309[AILq]	(((.-(((((((((((((...&...)))))))))))))..)))	GAAG-GAUAUUUUCGGGAAGG&UUGUCCCGAAAAUAUUAAUUC	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a342_TRINITY_DN50875_c0_g1_316_TPlot.pdf
TRINITY_DN5087_c0_g1:1470	si_s12	TRINITY_DN5087_c0_g1	1459	1479	1470	-22.80	-14.90	0.653508771929825	12.5	5-18,1475-1462	1-4,1479-1476[UP5];19-21,1461-1459[UP3]	...((((((((((((((....&....))))))))))))))...	UUGCAGUAUGGUAAUGAAAUG&CUUAUUAUUACUAUAUUGAUU	3	0.999994692112501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN5087_c0_g1_1470_TPlot.pdf
TRINITY_DN50893_c0_g1:124	si_s42	TRINITY_DN50893_c0_g1	112	133	124	-24.90	-16.60	0.666666666666667	7	1-10,133-124;12-13,122-121;14-19,119-114	11-11,123-123[SIL];x-x,120-120[BULt];20-21,113-112[UP3]	..((((((.((.((((((((((&)))))))))).))-))))))..	GAGAGGUCUCACUUAUUGAAGA&UCUUUAAUAAUUG-GAUUUCAA	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN50893_c0_g1_124_TPlot.pdf
TRINITY_DN5089_c0_g1:1638	si_s809	TRINITY_DN5089_c0_g1	1627	1648	1638	-28.50	-20.00	0.701754385964912	9.5	1-6,1648-1643;7-17,1641-1631	x-x,1642-1642[BULt];18-21,1630-1627[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	CUCCAGGGGAGGUGGUCGAAGA&UCUUCG-UUACCUUUUCUUAAU	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN5089_c0_g1_1638_TPlot.pdf
TRINITY_DN5089_c0_g1:1646	si_a762	TRINITY_DN5089_c0_g1	1635	1655	1646	-29.70	-20.50	0.69023569023569	7	1-17,1655-1639;19-21,1637-1635	18-18,1638-1638[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	GAGGUGGUCGAAGAUCCAAGG&CUUUGGGUUUUUGAUUGAUUC	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN5089_c0_g1_1646_TPlot.pdf
TRINITY_DN50907_c0_g1:295	si_a67	TRINITY_DN50907_c0_g1	284	304	295	-27.20	-19.10	0.702205882352941	6	2-16,303-289	1-1,304-304[UP5];17-21,288-284[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAACUACAAUUUGAAAGAAGA&GCUUCUUUCAAAUUGUUUUUC	2	0.997889528026194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN50907_c0_g1_295_TPlot.pdf
TRINITY_DN50907_c0_g1:300	si_a62	TRINITY_DN50907_c0_g1	289	311	300	-32.20	-23.50	0.729813664596273	7	3-6,309-306;7-21,303-289	1-2,311-310[UP5];x-x,305-304[BULt]	(((((((((((((((..((((..&..))))--)))))))))))))))	ACAAUUUGAAAGAAGAACGAGGU&GACUCG--CUUCUUUCAAAUUGU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN50907_c0_g1_300_TPlot.pdf
TRINITY_DN5091_c0_g1:203	si_s810	TRINITY_DN5091_c0_g1	192	212	203	-27.90	-18.90	0.67741935483871	9	1-4,212-209;6-17,207-196	5-5,208-208[SIL];18-21,195-192[UP3]	....((((((((((((.((((&)))).))))))))))))....	CAGGAGGAGGAGGUAAAGGAG&CUUCGUUACCUUUUCUUAAUA	4	0.99999860059085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN5091_c0_g1_203_TPlot.pdf
TRINITY_DN5091_c0_g1:206	si_s807	TRINITY_DN5091_c0_g1	195	216	206	-28.90	-19.70	0.681660899653979	10.5	3-7,214-210;9-20,207-196	1-2,216-215[UP5];8-8,209-208[AILt];21-21,195-195[UP3]	.((((((((((((..(((((..&..)))))-.)))))))))))).	GAGGAGGAGGUAAAGGAGGAGG&UAUCUUC-GUUACCUUUUCUUA	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5091_c0_g1_206_TPlot.pdf
TRINITY_DN5091_c0_g1:329	si_a338	TRINITY_DN5091_c0_g1	318	338	329	-31.10	-21.20	0.681672025723473	9.5	1-12,338-327;15-16,324-323	13-14,326-325[SIL];17-21,322-318[UP3]	.....((..((((((((((((&))))))))))))..)).....	CCCACUUGGCGGGACGAGGGG&UUCCUUGUCCCGAAAAUAUUA	1	0.0360472348068215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a338_TRINITY_DN5091_c0_g1_329_TPlot.pdf
TRINITY_DN5091_c0_g1:349	si_s74	TRINITY_DN5091_c0_g1	337	359	349	-25.00	-17.80	0.712	9	1-2,359-358;3-15,356-344;16-21,342-337	x-x,357-357[BULt];x-x,343-343[BULt]	((((((.(((((((((((((.((&))-)))))))))))))-))))))	GGGAGGCAAAGGAGGAGGAUCAG&CU-AUUUUUUUUCUUU-CCUUUC	4	0.999999999998621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5091_c0_g1_349_TPlot.pdf
TRINITY_DN5091_c0_g1:350	si_s88	TRINITY_DN5091_c0_g1	339	361	350	-34.80	-24.10	0.692528735632184	8.5	1-4,361-358;5-15,355-345;17-21,343-339	x-x,357-356[BULt];16-16,344-344[SIL]	(((((.(((((((((((..((((&))))--))))))))))).)))))	GAGGCAAAGGAGGAGGAUCAGGA&UCCU--UUCUUCUUCUUCGCUUC	4	0.999999998893116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5091_c0_g1_350_TPlot.pdf
TRINITY_DN5092_c0_g1:1747	si_a78	TRINITY_DN5092_c0_g1	1736	1756	1747	-22.30	-14.60	0.654708520179372	8	2-3,1755-1754;5-7,1752-1750;10-21,1747-1736	1-1,1756-1756[UP5];4-4,1753-1753[SIL];8-9,1749-1748[SIL]	((((((((((((..(((.((.&.)).)))..))))))))))))	UUCUUGAUGAUGUUAAAGAAG&AUUGUUUUUCAUUAUUAAGAA	3	0.999999998510517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN5092_c0_g1_1747_TPlot.pdf
TRINITY_DN5092_c0_g1:539	si_a318	TRINITY_DN5092_c0_g1	528	547	539	-22.50	-15.60	0.693333333333333	8.5	3-9,545-539;11-19,538-530	1-2,547-546[UP5];10-10,x-x[BULq];20-21,529-528[UP3]	..(((((((((-(((((((..&..))))))).)))))))))..	UAGAGAAGAUC-UGGAUAAUA&AUUUAUCCAUGAUUUUUUUAU	3	0.99999996635098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5092_c0_g1_539_TPlot.pdf
TRINITY_DN5093_c0_g1:3050	si_a320	TRINITY_DN5093_c0_g1	3039	3059	3050	-24.40	-19.20	0.786885245901639	9	4-8,3056-3052;10-21,3050-3039	1-3,3059-3057[UP5];9-9,3051-3051[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAGUAAAGAAAUGGUGGAGGC&UUAUCCAUGAUUUUUUUAUUC	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN5093_c0_g1_3050_TPlot.pdf
TRINITY_DN50982_c0_g1:366	si_s72	TRINITY_DN50982_c0_g1	355	375	366	-24.10	-16.40	0.680497925311203	8.5	1-5,375-371;8-15,368-361;17-20,359-356	6-7,370-369[SIL];16-16,360-360[SIL];21-21,355-355[UP3]	.((((.((((((((..(((((&)))))..)))))))).)))).	UGGGGCGGAGAAAAUUUAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN50982_c0_g1_366_TPlot.pdf
TRINITY_DN5098_c0_g2:311	si_a20	TRINITY_DN5098_c0_g2	299	321	311	-26.70	-17.42	0.652434456928839	12	1-3,321-319;7-12,314-309;13-21,307-299	4-6,318-315[AILt];x-x,308-308[BULt]	(((((((((.((((((....(((&)))-...))))))-)))))))))	UAGAACUAAUAGAUGAUGAUGGC&GCC-UAUUUAUUU-UUAGUUCUA	3	0.99999999573215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN5098_c0_g2_311_TPlot.pdf
TRINITY_DN509_c0_g1:1549	si_s812	TRINITY_DN509_c0_g1	1537	1558	1549	-26.40	-17.20	0.651515151515151	11	1-10,1558-1549;11-15,1547-1543	x-x,1548-1548[BULt];16-21,1542-1537[UP3]	......(((((.((((((((((&))))))))))-)))))......	AAGGUCAAGAGCGAGGUGACGA&UCGUUACCUU-UUCUUAAUAAU	4	0.999999742471099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN509_c0_g1_1549_TPlot.pdf
TRINITY_DN509_c0_g1:4995	si_s89	TRINITY_DN509_c0_g1	4977	5008	4995	-35.30	-23.60	0.668555240793201	17.5	1-4,5008-5005;5-16,5000-4989;17-21,4981-4977	x-x,5004-5001[BULt];x-x,4988-4982[BULt]	(((((.......((((((((((((....((((&))))----))))))))))))-------)))))	CGAAGAAGACGACGAGGAAGAGGAUGAUGAGG&CCUU----UCUUCUUCUUCG-------CUUCG	3	0.999999999999878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN509_c0_g1_4995_TPlot.pdf
TRINITY_DN509_c0_g1:5009	si_a785	TRINITY_DN509_c0_g1	4996	5019	5009	-25.90	-17.00	0.656370656370656	10.5	1-7,5019-5013;9-14,5010-5005;15-21,5002-4996	8-8,5012-5011[AILt];x-x,5004-5003[BULt]	(((((((..((((((..(((((((&)))))))-.))))))--)))))))	GAGGAUGAUGAGGAAGAGGAAGAG&CUCUUCU-AUUUUUC--UAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN509_c0_g1_5009_TPlot.pdf
TRINITY_DN509_c0_g1:5010	si_s79	TRINITY_DN509_c0_g1	4994	5019	5010	-26.20	-17.60	0.67175572519084	10.5	1-10,5019-5010;11-14,5008-5005;15-21,5000-4994	x-x,5009-5009[BULt];x-x,5004-5001[BULt]	(((((((....((((.((((((((((&))))))))))-))))----)))))))	AAGAGGAUGAUGAGGAAGAGGAAGAG&UUUUUUCUUU-CCUU----UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN509_c0_g1_5010_TPlot.pdf
TRINITY_DN509_c0_g1:5017	si_s88	TRINITY_DN509_c0_g1	5005	5027	5017	-34.80	-24.30	0.698275862068966	7	1-5,5027-5023;6-16,5021-5011;18-21,5008-5005	x-x,5022-5022[BULt];17-17,5010-5009[AILt]	((((..(((((((((((.(((((&)))))-)))))))))))-.))))	GAGGAAGAGGAAGAGGAGGAGGA&UCCUU-UCUUCUUCUUC-GCUUC	4	0.999999990330304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN509_c0_g1_5017_TPlot.pdf
TRINITY_DN509_c0_g1:5018	si_s84	TRINITY_DN509_c0_g1	5007	5027	5018	-32.30	-23.90	0.739938080495356	7.5	1-6,5027-5022;8-20,5020-5008	7-7,5021-5021[SIL];21-21,5007-5007[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	GGAAGAGGAAGAGGAGGAGGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999972643704982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN509_c0_g1_5018_TPlot.pdf
TRINITY_DN509_c0_g1:5020	si_s80	TRINITY_DN509_c0_g1	5008	5030	5020	-28.20	-21.60	0.765957446808511	7	1-8,5030-5023;9-14,5021-5016;15-21,5014-5008	x-x,5022-5022[BULt];x-x,5015-5015[BULt]	(((((((.((((((.((((((((&))))))))-))))))-)))))))	GAAGAGGAAGAGGAGGAGGAAGA&UUUUUCUU-UCCUUU-CUUCUUC	3	0.999999800174655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN509_c0_g1_5020_TPlot.pdf
TRINITY_DN509_c0_g1:5036	si_a495	TRINITY_DN509_c0_g1	5025	5047	5036	-31.90	-21.20	0.664576802507837	14.5	5-9,5043-5039;10-21,5036-5025	1-4,5047-5044[UP5];x-x,5038-5037[BULt]	((((((((((((..(((((....&....)))))--))))))))))))	GGAAGAUGAAGAAAGCGAUGAGG&AUAUGUCGU--UUUUCGUCUUCC	4	0.999999999562797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN509_c0_g1_5036_TPlot.pdf
TRINITY_DN509_c0_g1:5049	si_s89	TRINITY_DN509_c0_g1	5035	5059	5049	-35.30	-23.00	0.651558073654391	8.5	1-2,5059-5058;3-13,5056-5046;14-19,5042-5037	x-x,5057-5057[BULt];x-x,5045-5043[BULt];20-21,5036-5035[UP3]	..((((((...(((((((((((.((&))-)))))))))))---))))))..	GAAAGCGAUGAGGAAGAAGAGAUGG&CC-UUUCUUCUUCU---UCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN509_c0_g1_5049_TPlot.pdf
TRINITY_DN509_c0_g1:5066	si_s803	TRINITY_DN509_c0_g1	5053	5075	5066	-26.00	-19.00	0.730769230769231	6.5	2-15,5074-5061;16-17,5059-5058;18-21,5056-5053	1-1,5075-5075[UP5];x-x,5060-5060[BULt];x-x,5057-5057[BULt]	((((.((.((((((((((((((.&.))))))))))))))-))-))))	GAGAUGGAUGACGAGGAUGAAAG&AUUUUAUCUUCGUUA-CC-UUUU	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN509_c0_g1_5066_TPlot.pdf
TRINITY_DN509_c0_g1:5069	si_s800	TRINITY_DN509_c0_g1	5057	5077	5069	-29.70	-21.20	0.713804713804714	7.5	1-3,5077-5075;5-18,5074-5061;19-20,5059-5058	4-4,x-x[BULq];x-x,5060-5060[BULt];21-21,5057-5057[UP3]	.((.((((((((((((((-(((&))).))))))))))))))-)).	UGGAUGACGAGGAUGAAA-GCG&CGUAUUUUAUCUUCGUUA-CCU	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN509_c0_g1_5069_TPlot.pdf
TRINITY_DN509_c0_g1:5070	si_s799	TRINITY_DN509_c0_g1	5058	5078	5070	-30.00	-22.20	0.74	6	1-4,5078-5075;6-19,5074-5061;20-21,5059-5058	5-5,x-x[BULq];x-x,5060-5060[BULt]	((.((((((((((((((-((((&)))).))))))))))))))-))	GGAUGACGAGGAUGAAA-GCGA&UCGUAUUUUAUCUUCGUUA-CC	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN509_c0_g1_5070_TPlot.pdf
TRINITY_DN50_c0_g1:757	si_s627	TRINITY_DN50_c0_g1	746	766	757	-36.10	-24.30	0.673130193905817	6	1-4,766-763;6-14,761-753;16-20,751-747	5-5,762-762[SIL];15-15,752-752[SIL];21-21,746-746[UP3]	.(((((.(((((((((.((((&)))).))))))))).))))).	UACGCCAACGGAAAGACCGUU&AGCGAUCUUUUCGUAGGCGUU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN50_c0_g1_757_TPlot.pdf
TRINITY_DN50_c0_g1:758	si_s626	TRINITY_DN50_c0_g1	747	767	758	-36.10	-24.50	0.678670360110803	6	2-5,766-763;7-15,761-753;17-21,751-747	1-1,767-767[UP5];6-6,762-762[SIL];16-16,752-752[SIL]	(((((.(((((((((.((((.&.)))).))))))))).)))))	ACGCCAACGGAAAGACCGUUA&AAGCGAUCUUUUCGUAGGCGU	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN50_c0_g1_758_TPlot.pdf
TRINITY_DN5100_c0_g1:2937	si_s248	TRINITY_DN5100_c0_g1	2926	2946	2937	-31.90	-20.90	0.655172413793103	9.5	4-14,2943-2933;16-18,2931-2929	1-3,2946-2944[UP5];15-15,2932-2932[SIL];19-21,2928-2926[UP3]	...(((.(((((((((((...&...))))))))))).)))...	AUUUGUUUCGGGAAAUGCGCG&UAGGCAUUUCCCGAUAUAUUA	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN5100_c0_g1_2937_TPlot.pdf
TRINITY_DN5100_c0_g1:965	si_s362	TRINITY_DN5100_c0_g1	954	974	965	-34.70	-24.08	0.693948126801153	7	1-8,974-967;12-21,963-954	9-11,966-964[SIL]	((((((((((...((((((((&))))))))...))))))))))	GAGCGAUCGGCGAAAUUUAUU&AAUAGAUUGAACCGAUCGCUC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN5100_c0_g1_965_TPlot.pdf
TRINITY_DN5100_c0_g1:988	si_a20	TRINITY_DN5100_c0_g1	977	995	988	-26.70	-17.68	0.662172284644195	12	1-8,995-988;13-20,985-978	9-12,987-986[AILq];21-21,977-977[UP3]	.((((((((..--((((((((&))))))))....)))))))).	AAGAACUGGUC--AGAUGGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.999999891132899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN5100_c0_g1_988_TPlot.pdf
TRINITY_DN5101_c0_g1:326	si_a504	TRINITY_DN5101_c0_g1	314	334	326	-32.90	-21.50	0.653495440729483	5.5	2-6,333-329;8-14,328-322;15-19,320-316;21-21,314-314	1-1,334-334[UP5];7-7,x-x[BULq];x-x,321-321[BULt];20-20,315-315[SIL]	(.(((((.(((((((-(((((.&.))))).)))))))-))))).)	AGGUUCCUAAGGAAG-CGAAAG&UUUUCGUCUUCCUU-GGAAUGU	3	0.99999996635098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN5101_c0_g1_326_TPlot.pdf
TRINITY_DN5101_c0_g1:328	si_a502	TRINITY_DN5101_c0_g1	316	336	328	-32.10	-22.50	0.700934579439252	5.5	2-8,335-329;10-16,328-322;17-21,320-316	1-1,336-336[UP5];9-9,x-x[BULq];x-x,321-321[BULt]	(((((.(((((((-(((((((.&.))))))).)))))))-)))))	GUUCCUAAGGAAG-CGAAAGAA&GUUUUUCGUCUUCCUU-GGAAU	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN5101_c0_g1_328_TPlot.pdf
TRINITY_DN5101_c0_g1:333	si_s73	TRINITY_DN5101_c0_g1	321	342	333	-24.00	-15.80	0.658333333333333	7.5	3-13,340-330;14-20,328-322	1-2,342-341[UP5];x-x,329-329[BULt];21-21,321-321[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UAAGGAAGCGAAAGAAAGUACA&UCUAUUUUUUUUC-UUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5101_c0_g1_333_TPlot.pdf
TRINITY_DN5101_c0_g1:334	si_s72	TRINITY_DN5101_c0_g1	322	345	334	-24.10	-16.20	0.672199170124481	7.5	1-4,345-342;5-14,339-330;15-21,328-322	x-x,341-340[BULt];x-x,329-329[BULt]	(((((((.((((((((((..((((&))))--))))))))))-)))))))	AAGGAAGCGAAAGAAAGUACAGAA&UUCU--AUUUUUUUUC-UUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5101_c0_g1_334_TPlot.pdf
TRINITY_DN5101_c0_g1:471	si_s70	TRINITY_DN5101_c0_g1	460	480	471	-25.80	-18.80	0.728682170542636	7	1-15,480-466;18-21,463-460	16-17,465-464[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	GGAACAGGAAGAGGUGGAAGU&ACUUCUAUUUUUUUUCUUUCC	2	0.999718989854178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5101_c0_g1_471_TPlot.pdf
TRINITY_DN5101_c0_g1:472	si_s69	TRINITY_DN5101_c0_g1	461	481	472	-23.40	-16.00	0.683760683760684	8	2-16,480-466;19-21,463-461	1-1,481-481[UP5];17-18,465-464[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	GAACAGGAAGAGGUGGAAGUG&AACUUCUAUUUUUUUUCUUUC	2	0.999999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5101_c0_g1_472_TPlot.pdf
TRINITY_DN5101_c0_g1:488	si_a74	TRINITY_DN5101_c0_g1	477	497	488	-22.20	-16.10	0.725225225225225	6.5	1-6,497-492;8-20,490-478	7-7,491-491[SIL];21-21,477-477[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	AAGUGGUGGGAAACCAUUUGG&UCAAAUUGUUUUUCAUUAUUA	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN5101_c0_g1_488_TPlot.pdf
TRINITY_DN5101_c0_g1:834	si_s63	TRINITY_DN5101_c0_g1	823	843	834	-25.80	-17.10	0.662790697674419	9.5	2-6,842-838;9-18,835-826	1-1,843-843[UP5];7-8,837-836[SIL];19-21,825-823[UP3]	...((((((((((..(((((.&.)))))..))))))))))...	ACUGAAAUAGAAGCGGCUAGU&GUUAGCAACUUCUAUUUUUUU	3	0.999999884316333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN5101_c0_g1_834_TPlot.pdf
TRINITY_DN5101_c0_g1:893	si_a82	TRINITY_DN5101_c0_g1	877	902	893	-23.70	-16.00	0.675105485232067	14.5	1-11,902-892;12-20,886-878	x-x,891-887[BULt];21-21,877-877[UP3]	.(((((((((.....(((((((((((&)))))))))))-----))))))))).	GCUUUUCUUGUGUACAUGAUGAGAAG&UUUUUCAUUAU-----UAAGAAAAGG	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN5101_c0_g1_893_TPlot.pdf
TRINITY_DN5101_c0_g1:894	si_a81	TRINITY_DN5101_c0_g1	878	903	894	-23.00	-15.90	0.691304347826087	14.5	2-12,902-892;13-21,886-878	1-1,903-903[UP5];x-x,891-887[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	CUUUUCUUGUGUACAUGAUGAGAAGG&GUUUUUCAUUAU-----UAAGAAAAG	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN5101_c0_g1_894_TPlot.pdf
TRINITY_DN5101_c0_g1:934	si_s87	TRINITY_DN5101_c0_g1	918	943	934	-32.90	-21.80	0.662613981762918	10.5	1-10,943-934;11-15,932-928;16-21,923-918	x-x,933-933[BULt];x-x,927-924[BULt]	((((((....(((((.((((((((((&))))))))))-)))))----))))))	GGGCGGUAAAAGGGGUAAGAGAGGAG&UUCCUUUCUU-CUUCU----UCGCUU	2	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5101_c0_g1_934_TPlot.pdf
TRINITY_DN5101_c0_g1:935	si_s86	TRINITY_DN5101_c0_g1	919	944	935	-32.90	-22.00	0.668693009118541	10.5	1-11,944-934;12-16,932-928;17-21,923-919	x-x,933-933[BULt];x-x,927-924[BULt]	(((((....(((((.(((((((((((&)))))))))))-)))))----)))))	GGCGGUAAAAGGGGUAAGAGAGGAGG&UUUCCUUUCUU-CUUCU----UCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5101_c0_g1_935_TPlot.pdf
TRINITY_DN5101_c0_g1:937	si_a324	TRINITY_DN5101_c0_g1	926	947	937	-27.50	-18.50	0.672727272727273	12	1-4,947-944;7-20,940-927	5-6,943-941[AILt];21-21,926-926[UP3]	.((((((((((((((...((((&))))-..)))))))))))))).	AAAGGGGUAAGAGAGGAGGUGG&CCAU-GAUUUUUUUAUUCCUUG	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN5101_c0_g1_937_TPlot.pdf
TRINITY_DN5101_c0_g1:938	si_a323	TRINITY_DN5101_c0_g1	927	948	938	-26.80	-19.50	0.727611940298507	11	1-5,948-944;8-21,940-927	6-7,943-941[AILt]	((((((((((((((...(((((&)))))-..))))))))))))))	AAGGGGUAAGAGAGGAGGUGGA&UCCAU-GAUUUUUUUAUUCCUU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN5101_c0_g1_938_TPlot.pdf
TRINITY_DN5101_c0_g1:940	si_a321	TRINITY_DN5101_c0_g1	929	950	940	-26.70	-18.30	0.685393258426966	11.5	2-7,949-944;10-21,940-929	1-1,950-950[UP5];8-9,943-941[AILt]	((((((((((((...((((((.&.))))))-..))))))))))))	GGGGUAAGAGAGGAGGUGGAUU&UAUCCAU-GAUUUUUUUAUUCC	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN5101_c0_g1_940_TPlot.pdf
TRINITY_DN5101_c0_g1:941	si_a551	TRINITY_DN5101_c0_g1	929	950	941	-31.60	-21.50	0.680379746835443	7.5	1-13,950-938;15-17,937-935;18-21,932-929	14-14,x-x[BULq];x-x,934-933[BULt]	((((..(((-(((((((((((((&))))))))))))).)))--))))	GGGGUAAGA-GAGGAGGUGGAUU&AAUCUAUUUCUUUAUCU--CCCC	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN5101_c0_g1_941_TPlot.pdf
TRINITY_DN5101_c0_g1:942	si_a550	TRINITY_DN5101_c0_g1	930	951	942	-30.90	-20.70	0.669902912621359	7.5	1-14,951-938;16-18,937-935;19-21,932-930	15-15,x-x[BULq];x-x,934-933[BULt]	(((..(((-((((((((((((((&)))))))))))))).)))--)))	GGGUAAGA-GAGGAGGUGGAUUG&CAAUCUAUUUCUUUAUCU--CCC	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN5101_c0_g1_942_TPlot.pdf
TRINITY_DN5102_c0_g1:3888	si_s794	TRINITY_DN5102_c0_g1	3877	3899	3888	-31.20	-20.30	0.650641025641026	15	1-9,3899-3891;16-20,3882-3878	10-15,3890-3883[AILt];21-21,3877-3877[UP3]	.(((((........(((((((((&)))))))))--......))))).	GGAAGAGUGUCGCGGCGAGCUUG&CAAGCUCGU--AUUUUAUCUUCG	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN5102_c0_g1_3888_TPlot.pdf
TRINITY_DN5102_c0_g1:4294	si_s636	TRINITY_DN5102_c0_g1	4280	4303	4294	-40.80	-27.00	0.661764705882353	15	2-11,4302-4293;12-17,4288-4283;19-20,4282-4281	1-1,4303-4303[UP5];x-x,4292-4289[BULt];18-18,x-x[BULq];21-21,4280-4280[UP3]	.((-((((((....((((((((((.&.))))))))))----)))))).)).	CCG-GGGCAGAGUCGCGUCUGCGAU&UUCGUAGGCGU----UUGCCCUCGA	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN5102_c0_g1_4294_TPlot.pdf
TRINITY_DN5102_c0_g1:4296	si_s634	TRINITY_DN5102_c0_g1	4281	4305	4296	-38.30	-25.80	0.673629242819843	13.5	4-13,4302-4293;14-20,4288-4282	1-3,4305-4303[UP5];x-x,4292-4289[BULt];21-21,4281-4281[UP3]	.(((((((....((((((((((...&...))))))))))----))))))).	CGGGGCAGAGUCGCGUCUGCGAUGC&UUUUCGUAGGCGU----UUGCCCUC	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN5102_c0_g1_4296_TPlot.pdf
TRINITY_DN5102_c0_g1:4494	si_a499	TRINITY_DN5102_c0_g1	4482	4503	4494	-35.20	-24.30	0.690340909090909	8.5	1-5,4503-4499;7-14,4497-4490;15-20,4488-4483	6-6,4498-4498[SIL];x-x,4489-4489[BULt];21-21,4482-4482[UP3]	.((((((.((((((((.(((((&))))).))))))))-)))))).	ACGGGGAUGGGCGAGACACGGC&GUCGUUUUUCGUCU-UCCUUGG	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5102_c0_g1_4494_TPlot.pdf
TRINITY_DN5102_c0_g1:4495	si_a498	TRINITY_DN5102_c0_g1	4483	4504	4495	-33.50	-23.80	0.71044776119403	8	2-6,4503-4499;8-15,4497-4490;16-21,4488-4483	1-1,4504-4504[UP5];7-7,4498-4498[SIL];x-x,4489-4489[BULt]	((((((.((((((((.(((((.&.))))).))))))))-))))))	CGGGGAUGGGCGAGACACGGCC&UGUCGUUUUUCGUCU-UCCUUG	3	0.999889416257926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN5102_c0_g1_4495_TPlot.pdf
TRINITY_DN5103_c0_g1:10238	si_s895	TRINITY_DN5103_c0_g1	10227	10247	10238	-31.10	-20.50	0.659163987138264	7.5	2-11,10246-10237;14-20,10234-10228	1-1,10247-10247[UP5];12-13,10236-10235[SIL];21-21,10227-10227[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	AGAAUUGACAGGAAAGCCUGG&AUAGGCUUUCUCUUCAAUUUC	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN5103_c0_g1_10238_TPlot.pdf
TRINITY_DN5103_c0_g1:10239	si_s894	TRINITY_DN5103_c0_g1	10228	10248	10239	-29.10	-20.30	0.697594501718213	7.5	3-12,10246-10237;15-21,10234-10228	1-2,10248-10247[UP5];13-14,10236-10235[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GAAUUGACAGGAAAGCCUGGC&AAUAGGCUUUCUCUUCAAUUU	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN5103_c0_g1_10239_TPlot.pdf
TRINITY_DN5103_c0_g1:2932	si_a399	TRINITY_DN5103_c0_g1	2921	2941	2932	-22.60	-17.20	0.761061946902655	8	3-18,2939-2924	1-2,2941-2940[UP5];19-21,2923-2921[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUCGGCGGAACAAUUCUAUUC&AUAUAGAAUUGUUUUGUUUAU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN5103_c0_g1_2932_TPlot.pdf
TRINITY_DN5103_c0_g1:7506	si_a729	TRINITY_DN5103_c0_g1	7495	7515	7506	-41.60	-31.10	0.747596153846154	10	5-21,7511-7495	1-4,7515-7512[UP5]	(((((((((((((((((....&....)))))))))))))))))	CGGGGGUGAAGGUGUCCACCA&ACUCGGGCAUCUUUACCCCUG	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a729_TRINITY_DN5103_c0_g1_7506_TPlot.pdf
TRINITY_DN5103_c0_g1:9152	si_a532	TRINITY_DN5103_c0_g1	9141	9165	9152	-40.10	-26.68	0.665336658354115	13	2-7,9164-9159;9-16,9153-9146;18-20,9144-9142	1-1,9165-9165[UP5];8-8,9158-9154[AILt];17-17,9145-9145[SIL];21-21,9141-9141[UP3]	.(((.((((((((.....((((((.&.))))))----.)))))))).))).	AUGACCCGAUCGCCAAAGCGCGUGG&ACACGCG----AGCGAUCGGUUCAA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN5103_c0_g1_9152_TPlot.pdf
TRINITY_DN5103_c0_g1:9401	si_s188	TRINITY_DN5103_c0_g1	9390	9412	9401	-28.20	-18.70	0.663120567375887	11.5	2-4,9411-9409;5-18,9406-9393	1-1,9412-9412[UP5];x-x,9408-9407[BULt];19-21,9392-9390[UP3]	...((((((((((((((..(((.&.)))--))))))))))))))...	UCGCCAGAAUGGUCGUUCCGCUA&GAGU--AACGAUUAUUUUGGAAU	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN5103_c0_g1_9401_TPlot.pdf
TRINITY_DN5103_c0_g1:9421	si_s156	TRINITY_DN5103_c0_g1	9410	9430	9421	-44.40	-30.40	0.684684684684685	5	2-18,9429-9413;20-21,9411-9410	1-1,9430-9430[UP5];19-19,9412-9412[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	CUACUGGUCAUGGACUUCCUC&AAGGAGGUUCAUGGCCAGGGG	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s156_TRINITY_DN5103_c0_g1_9421_TPlot.pdf
TRINITY_DN5103_c0_g1:9605	si_a294	TRINITY_DN5103_c0_g1	9594	9614	9605	-28.20	-18.72	0.663829787234043	14.5	1-5,9614-9610;12-20,9603-9595	6-11,9609-9604[SIL];21-21,9594-9594[UP3]	.(((((((((......(((((&)))))......))))))))).	UGCGAGUCUUCAGCAUGUCCA&UGGAUUUAAAAAAGAUUCGCU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a294_TRINITY_DN5103_c0_g1_9605_TPlot.pdf
TRINITY_DN5103_c0_g1:9606	si_a293	TRINITY_DN5103_c0_g1	9595	9615	9606	-27.60	-19.22	0.696376811594203	13.5	1-6,9615-9610;13-21,9603-9595	7-12,9609-9604[SIL]	(((((((((......((((((&))))))......)))))))))	GCGAGUCUUCAGCAUGUCCAA&UUGGAUUUAAAAAAGAUUCGC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a293_TRINITY_DN5103_c0_g1_9606_TPlot.pdf
TRINITY_DN5105_c0_g1:1156	si_a325	TRINITY_DN5105_c0_g1	1145	1165	1156	-25.90	-17.90	0.691119691119691	4.5	1-13,1165-1153;15-19,1151-1147;21-21,1145-1145	14-14,1152-1152[SIL];20-20,1146-1146[SIL]	(.(((((.(((((((((((((&))))))))))))).))))).)	GGAAGGACUAGAAAAAUUAUG&CAUGAUUUUUUUAUUCCUUGU	2	0.993449698032269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN5105_c0_g1_1156_TPlot.pdf
TRINITY_DN5105_c0_g1:1157	si_a324	TRINITY_DN5105_c0_g1	1146	1166	1157	-27.50	-18.30	0.665454545454546	5	2-14,1165-1153;16-20,1151-1147	1-1,1166-1166[UP5];15-15,1152-1152[SIL];21-21,1146-1146[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	GAAGGACUAGAAAAAUUAUGA&CCAUGAUUUUUUUAUUCCUUG	2	0.998634806198616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN5105_c0_g1_1157_TPlot.pdf
TRINITY_DN5105_c0_g1:1158	si_a323	TRINITY_DN5105_c0_g1	1147	1167	1158	-26.80	-17.80	0.664179104477612	5.5	3-15,1165-1153;17-21,1151-1147	1-2,1167-1166[UP5];16-16,1152-1152[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AAGGACUAGAAAAAUUAUGAA&UCCAUGAUUUUUUUAUUCCUU	2	0.99996527576803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN5105_c0_g1_1158_TPlot.pdf
TRINITY_DN5105_c0_g1:705	si_a445	TRINITY_DN5105_c0_g1	696	714	705	-27.30	-20.98	0.768498168498169	7.5	1-10,714-705;15-21,702-696	11-14,704-703[AILq]	(((((((..--((((((((((&))))))))))....)))))))	UAACAGCUG--GUCUCAUAUC&GAUAUGAGAUAAUUGUUGUUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN5105_c0_g1_705_TPlot.pdf
TRINITY_DN5105_c0_g1:706	si_a444	TRINITY_DN5105_c0_g1	697	715	706	-29.30	-19.68	0.671672354948805	7.5	2-11,714-705;16-21,702-697	1-1,715-715[UP5];12-15,704-703[AILq]	((((((..--((((((((((.&.))))))))))....))))))	AACAGCUG--GUCUCAUAUCG&GGAUAUGAGAUAAUUGUUGUU	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN5105_c0_g1_706_TPlot.pdf
TRINITY_DN5107_c0_g1:1034	si_s898	TRINITY_DN5107_c0_g1	1023	1043	1034	-30.70	-20.80	0.677524429967427	10	6-21,1038-1023	1-5,1043-1039[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUGAAAUUGAGGAGAUCACU&GGCUUUCUCUUCAAUUUCAAU	3	0.999995751731662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN5107_c0_g1_1034_TPlot.pdf
TRINITY_DN5107_c0_g1:1356	si_a408	TRINITY_DN5107_c0_g1	1345	1367	1356	-20.10	-14.10	0.701492537313433	9.5	1-7,1367-1361;8-19,1358-1347	x-x,1360-1359[BULt];20-21,1346-1345[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	GCUUUGAAUAUAGAAUCAGAGCA&UGUUUUG--UUUAUAUUUAAAUA	4	0.999998314889159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5107_c0_g1_1356_TPlot.pdf
TRINITY_DN5107_c0_g1:1361	si_a405	TRINITY_DN5107_c0_g1	1348	1370	1361	-19.80	-13.30	0.671717171717172	12.5	4-10,1367-1361;11-21,1358-1348	1-3,1370-1368[UP5];x-x,1360-1359[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	UUGAAUAUAGAAUCAGAGCAGAA&AAUUGUUUUG--UUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5107_c0_g1_1361_TPlot.pdf
TRINITY_DN51082_c0_g1:528	si_s84	TRINITY_DN51082_c0_g1	517	537	528	-32.30	-21.90	0.678018575851393	7	1-7,537-531;9-14,529-524;17-21,521-517	8-8,530-530[SIL];15-16,523-522[SIL]	(((((..((((((.(((((((&))))))).))))))..)))))	CGGGGCUGAAGAGUGGGAAGA&UCUUUCCUUUCUUCUUCUUCG	2	0.999999999820421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN51082_c0_g1_528_TPlot.pdf
TRINITY_DN5108_c0_g2:654	si_a206	TRINITY_DN5108_c0_g2	643	663	654	-23.90	-18.20	0.761506276150628	6.5	1-16,663-648	17-21,647-643[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAUUUUUGGUUGAUUUAUUAG&CUAAUAAAUCGACUAAUUAAA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a206_TRINITY_DN5108_c0_g2_654_TPlot.pdf
TRINITY_DN510_c0_g1:1082	si_a786	TRINITY_DN510_c0_g1	1070	1091	1082	-26.60	-19.30	0.725563909774436	7	1-6,1091-1086;8-15,1084-1077;16-21,1075-1070	7-7,1085-1085[SIL];x-x,1076-1076[BULt]	((((((.((((((((.((((((&)))))).))))))))-))))))	GGAAAGCUGGAGAAGGAGAGGA&UCUUCUAUUUUUCUA-UUUUCC	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN510_c0_g1_1082_TPlot.pdf
TRINITY_DN510_c0_g1:1266	si_a327	TRINITY_DN510_c0_g1	1255	1278	1266	-28.40	-19.80	0.697183098591549	14.5	2-8,1277-1271;12-21,1264-1255	1-1,1278-1278[UP5];9-11,1270-1265[AILt]	((((((((((......(((((((.&.)))))))---...))))))))))	GGACGAGGAAGAGGACAAAGAUCU&UGAUUUUU---UUAUUCCUUGUCC	3	0.999761340034339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN510_c0_g1_1266_TPlot.pdf
TRINITY_DN510_c0_g1:671	si_a682	TRINITY_DN510_c0_g1	656	680	671	-35.50	-24.80	0.698591549295775	7.5	3-14,678-667;15-18,665-662;19-21,658-656	1-2,680-679[UP5];x-x,666-666[BULt];x-x,661-659[BULt]	(((...((((.((((((((((((..&..))))))))))))-))))---)))	GUGAACUUCGUGAACCGCGUGAAGG&UAUUCACGCGGUUU-CGAA---CAC	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a682_TRINITY_DN510_c0_g1_671_TPlot.pdf
TRINITY_DN510_c0_g1:923	si_s803	TRINITY_DN510_c0_g1	912	932	923	-26.00	-18.10	0.696153846153846	8.5	2-6,931-927;8-19,925-914	1-1,932-932[UP5];7-7,926-926[SIL];20-21,913-912[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CUGGGGUGAUGAAGUUAAGAG&AUUUUAUCUUCGUUACCUUUU	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN510_c0_g1_923_TPlot.pdf
TRINITY_DN510_c0_g1:924	si_s802	TRINITY_DN510_c0_g1	913	933	924	-26.40	-18.10	0.685606060606061	9	3-7,931-927;9-20,925-914	1-2,933-932[UP5];8-8,926-926[SIL];21-21,913-913[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGGGGUGAUGAAGUUAAGAGU&UAUUUUAUCUUCGUUACCUUU	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN510_c0_g1_924_TPlot.pdf
TRINITY_DN51101_c0_g1:172	si_a405	TRINITY_DN51101_c0_g1	161	181	172	-19.80	-13.10	0.661616161616162	8	3-17,179-165	1-2,181-180[UP5];18-21,164-161[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAAUAUAUAAAUAAAACAAAA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN51101_c0_g1_172_TPlot.pdf
TRINITY_DN5110_c0_g1:3255	si_s661	TRINITY_DN5110_c0_g1	3244	3264	3255	-35.40	-26.30	0.742937853107345	6	2-12,3263-3253;15-20,3250-3245	1-1,3264-3264[UP5];13-14,3252-3251[SIL];21-21,3244-3244[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	AAAUCGGCACGGUCCCCCGAG&AUCGGGGGAUCGAAUUGAUUA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN5110_c0_g1_3255_TPlot.pdf
TRINITY_DN5113_c0_g1:3394	si_a500	TRINITY_DN5113_c0_g1	3383	3404	3394	-34.40	-22.70	0.659883720930233	9.5	1-8,3404-3397;9-19,3395-3385	x-x,3396-3396[BULt];20-21,3384-3383[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	GGCGGGGGAGACGUGGGAAUGA&UCGUUUUU-CGUCUUCCUUGGA	2	0.999998159298689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN5113_c0_g1_3394_TPlot.pdf
TRINITY_DN5113_c0_g1:3399	si_a496	TRINITY_DN5113_c0_g1	3387	3408	3399	-32.40	-22.50	0.694444444444444	12	4-12,3405-3397;13-21,3395-3387	1-3,3408-3406[UP5];x-x,3396-3396[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GGGGAGACGUGGGAAUGACCAC&UAUGUCGUUUUU-CGUCUUCCU	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5113_c0_g1_3399_TPlot.pdf
TRINITY_DN5113_c0_g1:3400	si_a495	TRINITY_DN5113_c0_g1	3388	3409	3400	-31.90	-21.20	0.664576802507837	12	5-13,3405-3397;14-21,3395-3388	1-4,3409-3406[UP5];x-x,3396-3396[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	GGGAGACGUGGGAAUGACCACG&AUAUGUCGUUUUU-CGUCUUCC	2	0.999997189631238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5113_c0_g1_3400_TPlot.pdf
TRINITY_DN5113_c0_g1:3414	si_s97	TRINITY_DN5113_c0_g1	3403	3425	3414	-36.30	-24.80	0.683195592286501	9	1-5,3425-3421;6-14,3418-3410;17-19,3407-3405	x-x,3420-3419[BULt];15-16,3409-3408[SIL];20-21,3404-3403[UP3]	..(((..(((((((((..(((((&)))))--)))))))))..)))..	GACCACGCCGAAGCGGCCAGAAG&CUUCU--UCGCUUCGGAUUGGAA	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN5113_c0_g1_3414_TPlot.pdf
TRINITY_DN5113_c0_g1:3421	si_s92	TRINITY_DN5113_c0_g1	3408	3430	3421	-34.90	-24.70	0.707736389684814	11	3-10,3428-3421;11-19,3418-3410	1-2,3430-3429[UP5];x-x,3420-3419[BULt];20-21,3409-3408[UP3]	..(((((((((..((((((((..&..))))))))--)))))))))..	CGCCGAAGCGGCCAGAAGGAGCC&UUCUUCUUCU--UCGCUUCGGAU	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5113_c0_g1_3421_TPlot.pdf
TRINITY_DN5113_c0_g1:3423	si_s90	TRINITY_DN5113_c0_g1	3410	3432	3423	-35.30	-24.70	0.69971671388102	10.5	1-2,3432-3431;5-12,3428-3421;13-21,3418-3410	3-4,3430-3429[SIL];x-x,3420-3419[BULt]	(((((((((..((((((((..((&))..))))))))--)))))))))	CCGAAGCGGCCAGAAGGAGCCGG&CUUUCUUCUUCU--UCGCUUCGG	3	0.999999158860227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5113_c0_g1_3423_TPlot.pdf
TRINITY_DN5113_c0_g1:6083	si_a364	TRINITY_DN5113_c0_g1	6072	6092	6083	-27.70	-18.20	0.657039711191336	12	4-14,6089-6079	1-3,6092-6090[UP5];15-21,6078-6072[UP3]	.......(((((((((((...&...))))))))))).......	GGACGGCGAUCCGAUCAAUGC&AUUUUGAUCGGAUCAAAAAUG	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN5113_c0_g1_6083_TPlot.pdf
TRINITY_DN5113_c0_g1:7815	si_s130	TRINITY_DN5113_c0_g1	7804	7824	7815	-28.70	-18.70	0.651567944250871	8	1-10,7824-7815;12-14,7814-7812;15-17,7810-7808	11-11,x-x[BULq];x-x,7811-7811[BULt];18-21,7807-7804[UP3]	....(((.(((-((((((((((&)))))))))).)))-)))....	GAGAGAUCUGA-UCAGCUCUUC&GAAGAGUUGAAUCA-AUCAAAA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN5113_c0_g1_7815_TPlot.pdf
TRINITY_DN51149_c0_g1:58	si_s80	TRINITY_DN51149_c0_g1	47	70	58	-28.20	-21.80	0.773049645390071	12	4-8,67-63;9-21,59-47	1-3,70-68[UP5];x-x,62-60[BULt]	(((((((((((((...(((((...&...)))))---)))))))))))))	GAAGAAGAAGGGACAUAAGAAUAG&UUUUUCUU---UCCUUUCUUCUUC	4	0.999999129531883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN51149_c0_g1_58_TPlot.pdf
TRINITY_DN5114_c0_g1:290	si_s79	TRINITY_DN5114_c0_g1	279	299	290	-26.20	-17.70	0.675572519083969	7	1-10,299-290;12-19,288-281	11-11,289-289[SIL];20-21,280-279[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	UCGAGGGAAGCAAAGGAGAAA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5114_c0_g1_290_TPlot.pdf
TRINITY_DN5114_c0_g1:292	si_s77	TRINITY_DN5114_c0_g1	281	301	292	-25.50	-19.00	0.745098039215686	4	1-12,301-290;14-21,288-281	13-13,289-289[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAGGGAAGCAAAGGAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	0.999999999999915	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5114_c0_g1_292_TPlot.pdf
TRINITY_DN5114_c0_g1:293	si_s76	TRINITY_DN5114_c0_g1	282	302	293	-23.60	-17.00	0.720338983050847	4	1-13,302-290;15-21,288-282	14-14,289-289[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	AGGGAAGCAAAGGAGAAAAAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5114_c0_g1_293_TPlot.pdf
TRINITY_DN5114_c0_g1:295	si_s74	TRINITY_DN5114_c0_g1	284	304	295	-25.00	-16.40	0.656	4.5	2-15,303-290;17-21,288-284	1-1,304-304[UP5];16-16,289-289[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	GGAAGCAAAGGAGAAAAAUAU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5114_c0_g1_295_TPlot.pdf
TRINITY_DN5114_c0_g1:348	si_s40	TRINITY_DN5114_c0_g1	337	359	348	-24.30	-15.90	0.654320987654321	12.5	3-5,357-355;6-20,352-338	1-2,359-358[UP5];x-x,354-353[BULt];21-21,337-337[UP3]	.(((((((((((((((..(((..&..)))--))))))))))))))).	AAGGUCCAGUUGUUGACAGGAAG&AAUCU--UUAAUAAUUGGAUUUC	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN5114_c0_g1_348_TPlot.pdf
TRINITY_DN51152_c0_g1:236	si_s199	TRINITY_DN51152_c0_g1	224	245	236	-31.20	-20.30	0.650641025641026	10	5-14,241-232;15-21,230-224	1-4,245-242[UP5];x-x,231-231[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	ACAACUGCGUAUAUUUCAUCUA&AUUUUGGAAUGUAC-CAGUUGU	4	0.99994814439953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN51152_c0_g1_236_TPlot.pdf
TRINITY_DN5115_c0_g2:215	si_s803	TRINITY_DN5115_c0_g2	203	224	215	-26.00	-19.70	0.757692307692308	7.5	2-12,223-213;13-18,211-206	1-1,224-224[UP5];x-x,212-212[BULt];19-21,205-203[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	ACUAGGUGACCGAAGAUGAAAC&AUUUUAUCUUCG-UUACCUUUU	0	0.0884008835438463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5115_c0_g2_215_TPlot.pdf
TRINITY_DN5115_c0_g2:217	si_s801	TRINITY_DN5115_c0_g2	205	226	217	-28.20	-19.70	0.698581560283688	8.5	4-14,223-213;15-20,211-206	1-3,226-224[UP5];x-x,212-212[BULt];21-21,205-205[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	UAGGUGACCGAAGAUGAAACAU&GUAUUUUAUCUUCG-UUACCUU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN5115_c0_g2_217_TPlot.pdf
TRINITY_DN5117_c1_g1:1003	si_a666	TRINITY_DN5117_c1_g1	991	1012	1003	-31.60	-20.80	0.658227848101266	9	3-10,1010-1003;12-20,1000-992	1-2,1012-1011[UP5];11-11,1002-1001[AILt];21-21,991-991[UP3]	.(((((((((..((((((((..&..))))))))-.))))))))).	UAAUGGGGAACACAAUAGGCGA&AUGCCUAUUG-AUUCCUUAUUC	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN5117_c1_g1_1003_TPlot.pdf
TRINITY_DN5117_c1_g1:1004	si_a665	TRINITY_DN5117_c1_g1	992	1013	1004	-29.60	-20.80	0.702702702702703	10	4-11,1010-1003;13-21,1000-992	1-3,1013-1011[UP5];12-12,1002-1001[AILt]	(((((((((..((((((((...&...))))))))-.)))))))))	AAUGGGGAACACAAUAGGCGAG&AAUGCCUAUUG-AUUCCUUAUU	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN5117_c1_g1_1004_TPlot.pdf
TRINITY_DN5117_c1_g1:1005	si_a664	TRINITY_DN5117_c1_g1	993	1014	1005	-29.60	-20.10	0.679054054054054	11	5-12,1010-1003;14-21,1000-993	1-4,1014-1011[UP5];13-13,1002-1001[AILt]	((((((((..((((((((....&....))))))))-.))))))))	AUGGGGAACACAAUAGGCGAGU&AAAUGCCUAUUG-AUUCCUUAU	2	0.978364371173897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN5117_c1_g1_1005_TPlot.pdf
TRINITY_DN5117_c1_g1:1035	si_s793	TRINITY_DN5117_c1_g1	1024	1044	1035	-30.50	-20.50	0.672131147540984	5	1-11,1044-1034;13-14,1032-1031;17-20,1028-1025	12-12,1033-1033[SIL];15-16,1030-1029[SIL];21-21,1024-1024[UP3]	.((((..((.(((((((((((&))))))))))).))..)))).	AAAGAGCAAUUACGAGCUUGU&ACAAGCUCGUAUUUUAUCUUC	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN5117_c1_g1_1035_TPlot.pdf
TRINITY_DN5117_c1_g1:1038	si_s790	TRINITY_DN5117_c1_g1	1027	1047	1038	-27.80	-18.50	0.665467625899281	8	4-14,1044-1034;16-17,1032-1031;20-21,1028-1027	1-3,1047-1045[UP5];15-15,1033-1033[SIL];18-19,1030-1029[SIL]	((..((.(((((((((((...&...))))))))))).))..))	GAGCAAUUACGAGCUUGUAGG&AAAACAAGCUCGUAUUUUAUC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN5117_c1_g1_1038_TPlot.pdf
TRINITY_DN5117_c1_g1:1111	si_a784	TRINITY_DN5117_c1_g1	1100	1121	1111	-24.70	-17.70	0.716599190283401	9	2-9,1120-1113;10-18,1111-1103	1-1,1121-1121[UP5];x-x,1112-1112[BULt];19-21,1102-1100[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	UCCAUAGAAGAAUUGGAGGAGA&ACUCUUCUA-UUUUUCUAUUUU	2	0.999903646668128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5117_c1_g1_1111_TPlot.pdf
TRINITY_DN5117_c1_g1:1120	si_s69	TRINITY_DN5117_c1_g1	1109	1129	1120	-23.40	-15.60	0.666666666666667	8.5	3-16,1127-1114;19-21,1111-1109	1-2,1129-1128[UP5];17-18,1113-1112[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	GAAUUGGAGGAGAUAGAAGAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5117_c1_g1_1120_TPlot.pdf
TRINITY_DN5117_c1_g1:1124	si_a789	TRINITY_DN5117_c1_g1	1111	1134	1124	-24.80	-16.80	0.67741935483871	8.5	1-3,1134-1132;5-15,1129-1119;16-21,1116-1111	4-4,1131-1130[AILt];x-x,1118-1117[BULt]	((((((..(((((((((((..(((&)))-.)))))))))))--))))))	AUUGGAGGAGAUAGAAGAAGAGGA&UCU-AUUUUUCUAUUU--UCCAAU	2	0.999995762223937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN5117_c1_g1_1124_TPlot.pdf
TRINITY_DN5117_c1_g1:1129	si_a777	TRINITY_DN5117_c1_g1	1117	1138	1129	-27.00	-17.80	0.659259259259259	8.5	2-6,1137-1133;9-10,1130-1129;11-21,1127-1117	1-1,1138-1138[UP5];7-8,1132-1131[SIL];x-x,1128-1128[BULt]	(((((((((((.((..(((((.&.)))))..))-)))))))))))	GGAGAUAGAAGAAGAGGAAUCC&UGAUUCAACU-CUUCUAUUUUU	2	0.998248943405107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN5117_c1_g1_1129_TPlot.pdf
TRINITY_DN5117_c1_g1:1265	si_a222	TRINITY_DN5117_c1_g1	1254	1274	1265	-25.20	-16.50	0.654761904761905	14.5	5-16,1270-1259	1-4,1274-1271[UP5];17-21,1258-1254[UP3]	.....((((((((((((....&....)))))))))))).....	CUAAAGGAAGCAUGGGUAUUU&UUAAACUCAUGUUUCUAUAAU	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN5117_c1_g1_1265_TPlot.pdf
TRINITY_DN5117_c1_g1:1266	si_a221	TRINITY_DN5117_c1_g1	1255	1275	1266	-25.20	-16.50	0.654761904761905	15	6-17,1270-1259	1-5,1275-1271[UP5];18-21,1258-1255[UP3]	....((((((((((((.....&.....))))))))))))....	UAAAGGAAGCAUGGGUAUUUA&AUUAAACUCAUGUUUCUAUAA	2	0.986684328710919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN5117_c1_g1_1266_TPlot.pdf
TRINITY_DN5117_c1_g1:3100	si_a207	TRINITY_DN5117_c1_g1	3089	3109	3100	-23.90	-15.90	0.665271966527197	5	1-5,3109-3105;7-19,3103-3091	6-6,3104-3104[SIL];20-21,3090-3089[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UAUUAAUUAGUUGAUAUAUUA&UAAUAAAUCGACUAAUUAAAC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a207_TRINITY_DN5117_c1_g1_3100_TPlot.pdf
TRINITY_DN511_c0_g1:104	si_s84	TRINITY_DN511_c0_g1	92	113	104	-32.30	-21.40	0.662538699690402	5.5	3-13,111-101;15-21,98-92	1-2,113-112[UP5];14-14,100-99[AILt]	(((((((..(((((((((((..&..)))))))))))-.)))))))	CGAGGAAAUAAGAAAGGAAAAA&UCUUUCCUUUCUU-CUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN511_c0_g1_104_TPlot.pdf
TRINITY_DN511_c0_g1:116	si_a319	TRINITY_DN511_c0_g1	105	124	116	-22.40	-16.50	0.736607142857143	6.5	1-8,124-117;10-18,116-108	9-9,x-x[BULq];19-21,107-105[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AAGGAAAAAAUC-UGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	3	0.999843990216693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN511_c0_g1_116_TPlot.pdf
TRINITY_DN511_c0_g1:117	si_a318	TRINITY_DN511_c0_g1	106	125	117	-22.50	-16.50	0.733333333333333	6.5	2-9,124-117;11-19,116-108	1-1,125-125[UP5];10-10,x-x[BULq];20-21,107-106[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	AGGAAAAAAUC-UGGAUGAAG&AUUUAUCCAUGAUUUUUUUAU	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN511_c0_g1_117_TPlot.pdf
TRINITY_DN511_c0_g1:1253	si_a637	TRINITY_DN511_c0_g1	1242	1264	1253	-25.80	-17.72	0.686821705426357	14.5	1-5,1264-1260;11-21,1252-1242	6-10,1259-1253[AILt]	(((((((((((.......(((((&)))))--.....)))))))))))	AUAUUGCUCAACGUGCUUUCGAC&GUCGA--UUUUUUUGAGUAAUAU	2	0.99935304111418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN511_c0_g1_1253_TPlot.pdf
TRINITY_DN511_c0_g1:1255	si_a635	TRINITY_DN511_c0_g1	1244	1266	1255	-26.10	-17.32	0.66360153256705	14.5	1-7,1266-1260;13-21,1252-1244	8-12,1259-1253[AILt]	(((((((((.......(((((((&)))))))--.....)))))))))	AUUGCUCAACGUGCUUUCGACAU&AUGUCGA--UUUUUUUGAGUAAU	4	0.999999999934549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN511_c0_g1_1255_TPlot.pdf
TRINITY_DN511_c0_g1:1256	si_a634	TRINITY_DN511_c0_g1	1245	1267	1256	-26.40	-17.42	0.659848484848485	13.5	1-8,1267-1260;14-21,1252-1245	9-13,1259-1253[AILt]	((((((((.......((((((((&))))))))--.....))))))))	UUGCUCAACGUGCUUUCGACAUA&UAUGUCGA--UUUUUUUGAGUAA	4	0.999999999722376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN511_c0_g1_1256_TPlot.pdf
TRINITY_DN511_c0_g1:769	si_a402	TRINITY_DN511_c0_g1	758	778	769	-22.40	-14.80	0.660714285714286	7.5	1-2,778-777;4-16,775-763	3-3,776-776[SIL];17-21,762-758[UP3]	.....(((((((((((((.((&)).))))))))))))).....	GUACAAGACAAAACAAUUGUA&UAGAAUUGUUUUGUUUAUAUU	2	0.999999863454647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN511_c0_g1_769_TPlot.pdf
TRINITY_DN511_c0_g1:770	si_a401	TRINITY_DN511_c0_g1	759	779	770	-22.60	-14.80	0.654867256637168	7.5	2-3,778-777;5-17,775-763	1-1,779-779[UP5];4-4,776-776[SIL];18-21,762-759[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	UACAAGACAAAACAAUUGUAG&AUAGAAUUGUUUUGUUUAUAU	3	0.999999999998377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN511_c0_g1_770_TPlot.pdf
TRINITY_DN511_c0_g1:772	si_a399	TRINITY_DN511_c0_g1	761	781	772	-22.60	-14.80	0.654867256637168	9.5	4-5,778-777;7-19,775-763	1-3,781-779[UP5];6-6,776-776[SIL];20-21,762-761[UP3]	..(((((((((((((.((...&...)).)))))))))))))..	CAAGACAAAACAAUUGUAGAA&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999978531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN511_c0_g1_772_TPlot.pdf
TRINITY_DN511_c0_g1:773	si_a398	TRINITY_DN511_c0_g1	762	782	773	-22.40	-14.80	0.660714285714286	10.5	5-6,778-777;8-20,775-763	1-4,782-779[UP5];7-7,776-776[SIL];21-21,762-762[UP3]	.(((((((((((((.((....&....)).))))))))))))).	AAGACAAAACAAUUGUAGAAG&AAUAUAGAAUUGUUUUGUUUA	2	0.999998270355489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN511_c0_g1_773_TPlot.pdf
TRINITY_DN511_c0_g1:861	si_a786	TRINITY_DN511_c0_g1	850	870	861	-26.60	-18.30	0.68796992481203	6.5	1-8,870-863;10-11,861-860;13-20,858-851	9-9,862-862[SIL];12-12,859-859[SIL];21-21,850-850[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	AGAAGAUAGUGAUAUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999997374536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN511_c0_g1_861_TPlot.pdf
TRINITY_DN511_c0_g1:862	si_a785	TRINITY_DN511_c0_g1	851	871	862	-25.90	-18.50	0.714285714285714	5.5	2-9,870-863;11-12,861-860;14-21,858-851	1-1,871-871[UP5];10-10,862-862[SIL];13-13,859-859[SIL]	((((((((.((.((((((((.&.)))))))).)).))))))))	GAAGAUAGUGAUAUAGAAGAA&CUCUUCUAUUUUUCUAUUUUC	3	0.999999778889403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN511_c0_g1_862_TPlot.pdf
TRINITY_DN5120_c0_g1:3772	si_s79	TRINITY_DN5120_c0_g1	3761	3781	3772	-26.20	-18.10	0.690839694656489	9	1-12,3781-3770;15-17,3767-3765;19-20,3763-3762	13-14,3769-3768[SIL];18-18,3764-3764[SIL];21-21,3761-3761[UP3]	.((.(((..((((((((((((&))))))))))))..))).)).	CGGUGGAUUGGAGGGAGAAGA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5120_c0_g1_3772_TPlot.pdf
TRINITY_DN5120_c0_g1:3777	si_s74	TRINITY_DN5120_c0_g1	3766	3786	3777	-25.00	-16.30	0.652	12	5-17,3782-3770;20-21,3767-3766	1-4,3786-3783[UP5];18-19,3769-3768[SIL]	((..(((((((((((((....&....)))))))))))))..))	GAUUGGAGGGAGAAGAACGCU&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5120_c0_g1_3777_TPlot.pdf
TRINITY_DN5120_c0_g1:3803	si_a760	TRINITY_DN5120_c0_g1	3792	3810	3803	-31.10	-20.70	0.665594855305466	7.5	1-5,3810-3806;8-19,3805-3794	6-7,x-x[BULq];20-21,3793-3792[UP3]	..((((((((((((--(((((&)))))..))))))))))))..	GGCAGUCAAAGACC--AAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN5120_c0_g1_3803_TPlot.pdf
TRINITY_DN5120_c0_g1:3804	si_a759	TRINITY_DN5120_c0_g1	3793	3811	3804	-32.60	-23.60	0.723926380368098	6.5	1-6,3811-3806;9-20,3805-3794	7-8,x-x[BULq];21-21,3793-3793[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	GCAGUCAAAGACC--AAGGAG&CUCCUUUGGGUUUUUGAUUGA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5120_c0_g1_3804_TPlot.pdf
TRINITY_DN5120_c0_g1:4209	si_s201	TRINITY_DN5120_c0_g1	4198	4218	4209	-33.60	-21.90	0.651785714285714	9.5	4-7,4215-4212;9-14,4210-4205;16-21,4203-4198	1-3,4218-4216[UP5];8-8,4211-4211[SIL];15-15,4204-4204[SIL]	((((((.((((((.((((...&...)))).)))))).))))))	ACGCAAGUGGUAUCUUCCUAG&UUUGGAAUGUACCAGUUGUGU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN5120_c0_g1_4209_TPlot.pdf
TRINITY_DN5120_c0_g1:4314	si_a764	TRINITY_DN5120_c0_g1	4304	4323	4314	-28.90	-19.10	0.660899653979239	7	3-13,4321-4311;15-21,4310-4304	1-2,4323-4322[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	UUGGAUC-GUCAAGAACUCCU&UUGGGUUUUUGAUUGAUUCAA	2	0.999979918334748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN5120_c0_g1_4314_TPlot.pdf
TRINITY_DN5120_c0_g1:4463	si_a412	TRINITY_DN5120_c0_g1	4447	4472	4463	-18.30	-12.70	0.693989071038251	13.5	1-11,4472-4462;12-20,4456-4448	x-x,4461-4457[BULt];21-21,4447-4447[UP3]	.(((((((((.....(((((((((((&)))))))))))-----))))))))).	CGUUUAUUUGUACAUAAUAUAGACAA&UUGUUUAUAUU-----UAAAUAAAUA	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN5120_c0_g1_4463_TPlot.pdf
TRINITY_DN5120_c0_g1:4464	si_a411	TRINITY_DN5120_c0_g1	4448	4473	4464	-17.90	-12.90	0.720670391061453	12.5	1-12,4473-4462;13-21,4456-4448	x-x,4461-4457[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	GUUUAUUUGUACAUAAUAUAGACAAG&UUUGUUUAUAUU-----UAAAUAAAU	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN5120_c0_g1_4464_TPlot.pdf
TRINITY_DN5120_c0_g1:4465	si_a410	TRINITY_DN5120_c0_g1	4449	4474	4465	-17.80	-11.60	0.651685393258427	8.5	2-13,4473-4462;14-21,4456-4449	1-1,4474-4474[UP5];x-x,4461-4457[BULt]	((((((((.....((((((((((((.&.))))))))))))-----))))))))	UUUAUUUGUACAUAAUAUAGACAAGC&UUUUGUUUAUAUU-----UAAAUAAA	2	0.999999999975486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5120_c0_g1_4465_TPlot.pdf
TRINITY_DN51218_c0_g1:381	si_s584	TRINITY_DN51218_c0_g1	370	390	381	-26.30	-17.30	0.657794676806084	10.5	4-11,387-380;13-16,378-375;19-21,372-370	1-3,390-388[UP5];12-12,379-379[SIL];17-18,374-373[SIL]	(((..((((.((((((((...&...)))))))).))))..)))	GGAGCUGUCGGUGAUUUUCCA&AAAAAAAUCAUGGAUAAAUCC	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s584_TRINITY_DN51218_c0_g1_381_TPlot.pdf
TRINITY_DN51236_c0_g1:55	si_a548	TRINITY_DN51236_c0_g1	44	66	55	-27.20	-17.90	0.658088235294118	8.5	1-4,66-63;6-7,62-61;8-21,57-44	5-5,x-x[BULq];x-x,60-58[BULt]	((((((((((((((...((-((((&)))).))---))))))))))))))	GAGAUAAAGAAAUAAGCGA-UGAG&UUCAAUC---UAUUUCUUUAUCUC	2	0.997046598298336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN51236_c0_g1_55_TPlot.pdf
TRINITY_DN5124_c0_g1:2082	si_s801	TRINITY_DN5124_c0_g1	2071	2090	2082	-28.20	-18.90	0.670212765957447	6	1-3,2090-2088;6-21,2086-2071	4-5,2087-2087[AILq]	((((((((((((((((.-(((&)))..))))))))))))))))	AGGGUGGUGAAGAUAAU-UAC&GUAUUUUAUCUUCGUUACCUU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN5124_c0_g1_2082_TPlot.pdf
TRINITY_DN5124_c0_g1:2767	si_a149	TRINITY_DN5124_c0_g1	2756	2777	2767	-29.40	-19.50	0.663265306122449	11	1-9,2777-2769;12-18,2765-2759	10-11,2768-2766[AILt];19-21,2758-2756[UP3]	...(((((((...(((((((((&)))))))))-..)))))))...	CACGACCUUACGUACGACAAUG&CGUUGUUGU-UUUAAGGUCAAU	3	0.999999836795323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN5124_c0_g1_2767_TPlot.pdf
TRINITY_DN5124_c0_g1:2856	si_a785	TRINITY_DN5124_c0_g1	2845	2865	2856	-25.90	-17.10	0.66023166023166	11	2-16,2864-2850	1-1,2865-2865[UP5];17-21,2849-2845[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AACAUUAGAGAGAUGGAGGGA&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5124_c0_g1_2856_TPlot.pdf
TRINITY_DN5124_c0_g1:2857	si_a784	TRINITY_DN5124_c0_g1	2846	2866	2857	-24.70	-17.10	0.692307692307692	11.5	3-17,2864-2850	1-2,2866-2865[UP5];18-21,2849-2846[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACAUUAGAGAGAUGGAGGGAU&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999919543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5124_c0_g1_2857_TPlot.pdf
TRINITY_DN5124_c0_g1:2858	si_a783	TRINITY_DN5124_c0_g1	2847	2867	2858	-24.70	-17.10	0.692307692307692	12.5	4-18,2864-2850	1-3,2867-2865[UP5];19-21,2849-2847[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAUUAGAGAGAUGGAGGGAUG&AACUCUUCUAUUUUUCUAUUU	4	0.99999999970464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5124_c0_g1_2858_TPlot.pdf
TRINITY_DN5124_c0_g1:2861	si_a780	TRINITY_DN5124_c0_g1	2850	2869	2861	-27.30	-18.80	0.688644688644689	7	1-4,2869-2866;6-6,2864-2864;8-21,2863-2850	5-5,2865-2865[SIL];7-7,x-x[BULq]	((((((((((((((-(.((((&)))).).))))))))))))))	UAGAGAGAUGGAGG-GAUGAA&UUCAACUCUUCUAUUUUUCUA	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN5124_c0_g1_2861_TPlot.pdf
TRINITY_DN5124_c0_g1:2862	si_a779	TRINITY_DN5124_c0_g1	2851	2870	2862	-27.00	-18.60	0.688888888888889	6.5	1-5,2870-2866;7-7,2864-2864;9-21,2863-2851	6-6,2865-2865[SIL];8-8,x-x[BULq]	(((((((((((((-(.(((((&))))).).)))))))))))))	AGAGAGAUGGAGG-GAUGAAU&AUUCAACUCUUCUAUUUUUCU	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN5124_c0_g1_2862_TPlot.pdf
TRINITY_DN5124_c0_g1:2947	si_s483	TRINITY_DN5124_c0_g1	2936	2956	2947	-21.40	-14.28	0.667289719626168	8	1-12,2956-2945;16-20,2941-2937	13-15,2944-2942[SIL];21-21,2936-2936[UP3]	.(((((...((((((((((((&))))))))))))...))))).	AGUGUUACCAUAGAUGUGGGA&UCCUAUAUUUAUUUAAAUAUA	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN5124_c0_g1_2947_TPlot.pdf
TRINITY_DN5124_c0_g1:2948	si_s482	TRINITY_DN5124_c0_g1	2937	2957	2948	-21.20	-13.78	0.65	8	2-13,2956-2945;17-21,2941-2937	1-1,2957-2957[UP5];14-16,2944-2942[SIL]	(((((...((((((((((((.&.))))))))))))...)))))	GUGUUACCAUAGAUGUGGGAA&AUCCUAUAUUUAUUUAAAUAU	3	0.999998071001669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN5124_c0_g1_2948_TPlot.pdf
TRINITY_DN5124_c0_g1:3012	si_a575	TRINITY_DN5124_c0_g1	3000	3021	3012	-28.60	-18.90	0.660839160839161	6.5	1-14,3021-3008;17-17,3005-3005;18-20,3003-3001	15-16,3007-3006[SIL];x-x,3004-3004[BULt];21-21,3000-3000[UP3]	.(((.(..((((((((((((((&))))))))))))))..)-))).	CCUUAGGAGCAAACAUAUGGUU&AAUCGUAUGUUUGUAAC-AAGA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a575_TRINITY_DN5124_c0_g1_3012_TPlot.pdf
TRINITY_DN5124_c0_g1:3089	si_s1	TRINITY_DN5124_c0_g1	3078	3098	3089	-18.70	-12.80	0.684491978609626	11.5	1-14,3098-3085	15-21,3084-3078[UP3]	.......((((((((((((((&)))))))))))))).......	CAAUCAAGAGUGAUAUGGAGA&UUUUUAUAUUACUUAUUAUUA	3	0.999999869376044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN5124_c0_g1_3089_TPlot.pdf
TRINITY_DN5124_c0_g1:3284	si_a409	TRINITY_DN5124_c0_g1	3273	3294	3284	-19.50	-13.30	0.682051282051282	7	1-4,3294-3291;5-17,3289-3277	x-x,3290-3290[BULt];18-21,3276-3273[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	ACUAUUAAAUAUAAACACGAAC&GUUU-UGUUUAUAUUUAAAUAA	2	0.999993283641452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN5124_c0_g1_3284_TPlot.pdf
TRINITY_DN5124_c0_g1:3285	si_a408	TRINITY_DN5124_c0_g1	3274	3295	3285	-20.10	-13.50	0.671641791044776	7	2-5,3294-3291;6-18,3289-3277	1-1,3295-3295[UP5];x-x,3290-3290[BULt];19-21,3276-3274[UP3]	...(((((((((((((.((((.&.))))-)))))))))))))...	CUAUUAAAUAUAAACACGAACU&UGUUU-UGUUUAUAUUUAAAUA	2	0.999999435738506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5124_c0_g1_3285_TPlot.pdf
TRINITY_DN5124_c0_g1:3286	si_a407	TRINITY_DN5124_c0_g1	3275	3296	3286	-19.80	-13.50	0.681818181818182	8	3-6,3294-3291;7-19,3289-3277	1-2,3296-3295[UP5];x-x,3290-3290[BULt];20-21,3276-3275[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	UAUUAAAUAUAAACACGAACUG&UUGUUU-UGUUUAUAUUUAAAU	2	0.99999999336577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5124_c0_g1_3286_TPlot.pdf
TRINITY_DN5124_c0_g1:3287	si_a406	TRINITY_DN5124_c0_g1	3276	3297	3287	-19.80	-13.50	0.681818181818182	9	4-7,3294-3291;8-20,3289-3277	1-3,3297-3295[UP5];x-x,3290-3290[BULt];21-21,3276-3276[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	AUUAAAUAUAAACACGAACUGU&AUUGUUU-UGUUUAUAUUUAAA	2	0.999999999897431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5124_c0_g1_3287_TPlot.pdf
TRINITY_DN51253_c0_g1:115	si_a536	TRINITY_DN51253_c0_g1	104	124	115	-38.50	-26.40	0.685714285714286	9	1-3,124-122;5-18,120-107	4-4,121-121[SIL];19-21,106-104[UP3]	...((((((((((((((.(((&))).))))))))))))))...	CCUGUUGGACCGGUUGCGUGC&GCGAGCGAUCGGUUCAAUCUA	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a536_TRINITY_DN51253_c0_g1_115_TPlot.pdf
TRINITY_DN5125_c0_g1:1964	si_a68	TRINITY_DN5125_c0_g1	1953	1973	1964	-25.40	-16.90	0.665354330708661	8.5	1-5,1973-1969;8-17,1966-1957;19-21,1955-1953	6-7,1968-1967[SIL];18-18,1956-1956[SIL]	(((.((((((((((..(((((&)))))..)))))))))).)))	UGGUGAACGAUUUGCUGGAGG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999998305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5125_c0_g1_1964_TPlot.pdf
TRINITY_DN5125_c0_g1:1987	si_a80	TRINITY_DN5125_c0_g1	1976	1996	1987	-22.10	-14.50	0.656108597285068	9.5	1-14,1996-1983	15-21,1982-1976[UP3]	.......((((((((((((((&)))))))))))))).......	AUCUAGGAGUAAUGAGAGACA&UGUUUUUCAUUAUUAAGAAAA	2	0.999931146851312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN5125_c0_g1_1987_TPlot.pdf
TRINITY_DN5125_c0_g1:1988	si_a79	TRINITY_DN5125_c0_g1	1977	1997	1988	-22.20	-14.70	0.662162162162162	9.5	2-15,1996-1983	1-1,1997-1997[UP5];16-21,1982-1977[UP3]	......((((((((((((((.&.))))))))))))))......	UCUAGGAGUAAUGAGAGACAU&UUGUUUUUCAUUAUUAAGAAA	3	0.99999996635098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN5125_c0_g1_1988_TPlot.pdf
TRINITY_DN5125_c0_g1:1989	si_a78	TRINITY_DN5125_c0_g1	1978	1998	1989	-22.30	-14.70	0.659192825112108	10.5	3-16,1996-1983	1-2,1998-1997[UP5];17-21,1982-1978[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUAGGAGUAAUGAGAGACAUG&AUUGUUUUUCAUUAUUAAGAA	4	0.999999996335082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN5125_c0_g1_1989_TPlot.pdf
TRINITY_DN5125_c0_g1:1990	si_a77	TRINITY_DN5125_c0_g1	1979	1999	1990	-22.20	-14.70	0.662162162162162	11.5	4-17,1996-1983	1-3,1999-1997[UP5];18-21,1982-1979[UP3]	....((((((((((((((...&...))))))))))))))....	UAGGAGUAAUGAGAGACAUGG&AAUUGUUUUUCAUUAUUAAGA	4	0.999999965227629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN5125_c0_g1_1990_TPlot.pdf
TRINITY_DN5125_c0_g1:1992	si_a75	TRINITY_DN5125_c0_g1	1981	2001	1992	-21.30	-14.70	0.690140845070423	13.5	6-19,1996-1983	1-5,2001-1997[UP5];20-21,1982-1981[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGAGUAAUGAGAGACAUGGUU&CAAAUUGUUUUUCAUUAUUAA	3	0.999999911084252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN5125_c0_g1_1992_TPlot.pdf
TRINITY_DN5125_c0_g1:1993	si_a74	TRINITY_DN5125_c0_g1	1982	2002	1993	-22.20	-14.70	0.662162162162162	14.5	7-20,1996-1983	1-6,2002-1997[UP5];21-21,1982-1982[UP3]	.((((((((((((((......&......)))))))))))))).	GAGUAAUGAGAGACAUGGUUC&UCAAAUUGUUUUUCAUUAUUA	2	0.999997391856114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN5125_c0_g1_1993_TPlot.pdf
TRINITY_DN5125_c0_g1:274	si_a274	TRINITY_DN5125_c0_g1	263	284	274	-36.10	-23.70	0.656509695290859	11	1-9,284-276;14-21,270-263	10-13,275-271[AILt]	((((((((.....(((((((((&)))))))))-....))))))))	AAGUGGUCGACAAUGUAGGCGU&ACGCCUACG-AAAAGAUCGCUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a274_TRINITY_DN5125_c0_g1_274_TPlot.pdf
TRINITY_DN5125_c0_g1:276	si_a273	TRINITY_DN5125_c0_g1	264	285	276	-36.10	-24.00	0.664819944598338	10	1-10,285-276;15-21,270-264	11-14,275-271[AILt]	(((((((.....((((((((((&))))))))))-....)))))))	AGUGGUCGACAAUGUAGGCGUU&AACGCCUACG-AAAAGAUCGCU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a273_TRINITY_DN5125_c0_g1_276_TPlot.pdf
TRINITY_DN5127_c0_g1:1075	si_a188	TRINITY_DN5127_c0_g1	1063	1085	1075	-32.00	-22.10	0.690625	8	1-7,1085-1079;10-13,1075-1072;14-21,1070-1063	8-9,1078-1076[AILt];x-x,1071-1071[BULt]	((((((((.((((...(((((((&)))))))-..))))-))))))))	UAGUGAACAAGGGUACAGAUGUU&AAUAUCU-UUCCCU-GUUCACUA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN5127_c0_g1_1075_TPlot.pdf
TRINITY_DN5127_c0_g1:1965	si_s693	TRINITY_DN5127_c0_g1	1954	1972	1965	-23.90	-16.70	0.698744769874477	7.5	1-6,1972-1967;9-19,1966-1956	7-8,x-x[BULq];20-21,1955-1954[UP3]	..(((((((((((--((((((&))))))..)))))))))))..	CUAUGAAUCGACU--UUAGAC&GUUUAAUUAGUCGAUUUAUUA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN5127_c0_g1_1965_TPlot.pdf
TRINITY_DN5127_c0_g1:1966	si_s692	TRINITY_DN5127_c0_g1	1955	1973	1966	-24.20	-16.80	0.694214876033058	7.5	2-7,1972-1967;10-20,1966-1956	1-1,1973-1973[UP5];8-9,x-x[BULq];21-21,1955-1955[UP3]	.(((((((((((--((((((.&.))))))..))))))))))).	UAUGAAUCGACU--UUAGACA&AGUUUAAUUAGUCGAUUUAUU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN5127_c0_g1_1966_TPlot.pdf
TRINITY_DN5127_c0_g1:2033	si_a702	TRINITY_DN5127_c0_g1	2022	2042	2033	-30.80	-20.50	0.665584415584416	5.5	1-2,2042-2041;4-5,2039-2038;7-20,2036-2023	3-3,2040-2040[SIL];6-6,2037-2037[SIL];21-21,2022-2022[UP3]	.((((((((((((((.((.((&)).)).)))))))))))))).	AAUUUUGGGAUGUACAAGGUG&CAACUGGUACAUUCCAAAAUA	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN5127_c0_g1_2033_TPlot.pdf
TRINITY_DN5127_c0_g1:2034	si_a701	TRINITY_DN5127_c0_g1	2023	2044	2034	-31.20	-20.70	0.663461538461538	7.5	1-2,2044-2043;4-6,2041-2039;8-21,2036-2023	3-3,2042-2042[SIL];7-7,2038-2037[AILt]	((((((((((((((..(((.((&)).)))-.))))))))))))))	AUUUUGGGAUGUACAAGGUGGU&ACAACU-GGUACAUUCCAAAAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN5127_c0_g1_2034_TPlot.pdf
TRINITY_DN5127_c0_g1:2035	si_a700	TRINITY_DN5127_c0_g1	2024	2045	2035	-32.80	-22.70	0.692073170731707	7.5	1-3,2045-2043;5-7,2041-2039;9-21,2036-2024	4-4,2042-2042[SIL];8-8,2038-2037[AILt]	(((((((((((((..(((.(((&))).)))-.)))))))))))))	UUUUGGGAUGUACAAGGUGGUG&CACAACU-GGUACAUUCCAAAA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN5127_c0_g1_2035_TPlot.pdf
TRINITY_DN5127_c0_g1:2036	si_a699	TRINITY_DN5127_c0_g1	2025	2046	2036	-33.60	-22.10	0.657738095238095	8.5	2-4,2045-2043;6-8,2041-2039;10-21,2036-2025	1-1,2046-2046[UP5];5-5,2042-2042[SIL];9-9,2038-2037[AILt]	((((((((((((..(((.(((.&.))).)))-.))))))))))))	UUUGGGAUGUACAAGGUGGUGG&ACACAACU-GGUACAUUCCAAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a699_TRINITY_DN5127_c0_g1_2036_TPlot.pdf
TRINITY_DN5127_c0_g1:2099	si_s73	TRINITY_DN5127_c0_g1	2088	2110	2099	-24.00	-16.10	0.670833333333333	11.5	2-8,2109-2103;9-19,2100-2090	1-1,2110-2110[UP5];x-x,2102-2101[BULt];20-21,2089-2088[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	GUGGGAAAGAGGAUCAAGAUGGC&UCUAUUUU--UUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5127_c0_g1_2099_TPlot.pdf
TRINITY_DN5127_c0_g1:2100	si_s72	TRINITY_DN5127_c0_g1	2089	2111	2100	-24.10	-16.10	0.66804979253112	12.5	3-9,2109-2103;10-20,2100-2090	1-2,2111-2110[UP5];x-x,2102-2101[BULt];21-21,2089-2089[UP3]	.(((((((((((..(((((((..&..)))))))--))))))))))).	UGGGAAAGAGGAUCAAGAUGGCG&UUCUAUUUU--UUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5127_c0_g1_2100_TPlot.pdf
TRINITY_DN5128_c0_g1:1104	si_s697	TRINITY_DN5128_c0_g1	1092	1113	1104	-26.90	-17.60	0.654275092936803	9	4-13,1110-1101;14-18,1099-1095;20-21,1093-1092	1-3,1113-1111[UP5];x-x,1100-1100[BULt];19-19,1094-1094[SIL]	((.(((((.((((((((((...&...))))))))))-))))).))	UCUCUGAUCGAAUCGACUGGAG&AAUUAGUCGAUUU-AUUAGUGA	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN5128_c0_g1_1104_TPlot.pdf
TRINITY_DN5128_c0_g1:1983	si_a402	TRINITY_DN5128_c0_g1	1972	1992	1983	-22.40	-15.00	0.669642857142857	9	3-6,1990-1987;9-21,1984-1972	1-2,1992-1991[UP5];7-8,1986-1985[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	GAUGUAAACAAAAAUGUUCAC&UAGAAUUGUUUUGUUUAUAUU	2	0.999998582666172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5128_c0_g1_1983_TPlot.pdf
TRINITY_DN51316_c0_g1:286	si_a548	TRINITY_DN51316_c0_g1	275	295	286	-27.20	-18.10	0.665441176470588	12.5	7-21,289-275	1-6,295-290[UP5]	(((((((((((((((......&......)))))))))))))))	GGGAUAAAGAAAUGGUAAAGC&UUCAAUCUAUUUCUUUAUCUC	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN51316_c0_g1_286_TPlot.pdf
TRINITY_DN5131_c0_g1:819	si_s553	TRINITY_DN5131_c0_g1	808	828	819	-23.50	-15.50	0.659574468085106	8.5	2-6,827-823;9-21,820-808	1-1,828-828[UP5];7-8,822-821[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	UCGAGAAUGUUGGAGCUAUUA&AAAUAGAAUUAAUAUUUUCGG	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN5131_c0_g1_819_TPlot.pdf
TRINITY_DN51328_c0_g1:147	si_s794	TRINITY_DN51328_c0_g1	136	156	147	-31.20	-20.48	0.656410256410256	8	1-6,156-151;10-21,147-136	7-9,150-148[SIL]	((((((((((((...((((((&))))))...))))))))))))	UGAAGAUGAAAUUAAGGCUUG&CAAGCUCGUAUUUUAUCUUCG	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN51328_c0_g1_147_TPlot.pdf
TRINITY_DN5132_c0_g1:1488	si_a220	TRINITY_DN5132_c0_g1	1477	1502	1488	-25.10	-16.40	0.653386454183267	14	1-7,1502-1496;8-18,1490-1480	x-x,1495-1491[BULt];19-21,1479-1477[UP3]	...(((((((((((.....(((((((&)))))))-----)))))))))))...	AAGAGAAACAUGAGCCAUAUUUGAUU&AAUUAAA-----CUCAUGUUUCUAUA	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN5132_c0_g1_1488_TPlot.pdf
TRINITY_DN51340_c0_g1:209	si_a783	TRINITY_DN51340_c0_g1	197	218	209	-24.70	-16.60	0.672064777327935	11.5	3-12,216-207;14-19,204-199	1-2,218-217[UP5];13-13,206-205[AILt];20-21,198-197[UP3]	..((((((..((((((((((..&..))))))))))-.))))))..	UCAUGGAACUGAUGGAAGGGGG&AACUCUUCUAUU-UUUCUAUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN51340_c0_g1_209_TPlot.pdf
TRINITY_DN51340_c0_g1:474	si_s78	TRINITY_DN51340_c0_g1	463	483	474	-26.20	-18.70	0.713740458015267	10	3-18,481-466	1-2,483-482[UP5];19-21,465-463[UP3]	...((((((((((((((((..&..))))))))))))))))...	UACAGAAAGGAAGGGGAAGCG&UUUUUUUCUUUCCUUUCUUCU	2	0.999999999999742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN51340_c0_g1_474_TPlot.pdf
TRINITY_DN51340_c0_g1:478	si_s74	TRINITY_DN51340_c0_g1	467	487	478	-25.00	-17.50	0.7	14.5	7-21,481-467	1-6,487-482[UP5]	(((((((((((((((......&......)))))))))))))))	GAAAGGAAGGGGAAGCGCUCC&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN51340_c0_g1_478_TPlot.pdf
TRINITY_DN51340_c0_g1:646	si_s813	TRINITY_DN51340_c0_g1	634	656	646	-27.10	-17.72	0.653874538745387	9	1-4,656-653;5-12,651-644;16-21,639-634	x-x,652-652[BULt];13-15,643-640[AILt]	((((((....((((((((.((((&))))-))))))))-...))))))	CAUUAUGUGCGAAGAGGUGGACG&CGUU-ACCUUUUC-UUAAUAAUG	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN51340_c0_g1_646_TPlot.pdf
TRINITY_DN51340_c0_g1:651	si_s87	TRINITY_DN51340_c0_g1	640	665	651	-32.90	-21.70	0.659574468085106	18	1-6,665-660;7-9,654-652;11-19,650-642	x-x,659-655[BULt];10-10,651-651[SIL];20-21,641-640[UP3]	..(((((((((.(((.....((((((&))))))-----))).)))))))))..	GUGCGAAGAGGUGGACGAUUGGGGAA&UUCCUU-----UCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN51340_c0_g1_651_TPlot.pdf
TRINITY_DN51345_c0_g1:32	si_a405	TRINITY_DN51345_c0_g1	21	42	32	-19.80	-13.30	0.671717171717172	8	1-6,42-37;7-17,35-25	x-x,36-36[BULt];18-21,24-21[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UGGCGUGUAAACAAAUACAGUU&AAUUGU-UUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN51345_c0_g1_32_TPlot.pdf
TRINITY_DN51345_c0_g1:33	si_a404	TRINITY_DN51345_c0_g1	22	43	33	-21.70	-14.60	0.672811059907834	7.5	1-7,43-37;8-18,35-25	x-x,36-36[BULt];19-21,24-22[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	GGCGUGUAAACAAAUACAGUUU&GAAUUGU-UUUGUUUAUAUUUA	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN51345_c0_g1_33_TPlot.pdf
TRINITY_DN51345_c0_g1:34	si_a403	TRINITY_DN51345_c0_g1	23	44	34	-22.00	-15.50	0.704545454545455	7	1-8,44-37;9-19,35-25	x-x,36-36[BULt];20-21,24-23[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	GCGUGUAAACAAAUACAGUUUU&AGAAUUGU-UUUGUUUAUAUUU	2	0.999689569524312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN51345_c0_g1_34_TPlot.pdf
TRINITY_DN51345_c0_g1:35	si_a402	TRINITY_DN51345_c0_g1	24	45	35	-22.40	-16.60	0.741071428571429	6	1-9,45-37;10-20,35-25	x-x,36-36[BULt];21-21,24-24[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	CGUGUAAACAAAUACAGUUUUA&UAGAAUUGU-UUUGUUUAUAUU	1	0.0459713826781006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN51345_c0_g1_35_TPlot.pdf
TRINITY_DN51345_c0_g1:37	si_a401	TRINITY_DN51345_c0_g1	25	46	37	-22.60	-17.90	0.792035398230088	5	1-10,46-37;11-21,35-25	x-x,36-36[BULt]	(((((((((((.((((((((((&))))))))))-)))))))))))	GUGUAAACAAAUACAGUUUUAU&AUAGAAUUGU-UUUGUUUAUAU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN51345_c0_g1_37_TPlot.pdf
TRINITY_DN51345_c0_g1:39	si_a399	TRINITY_DN51345_c0_g1	27	48	39	-22.60	-15.90	0.70353982300885	6.5	2-12,47-37;13-21,35-27	1-1,48-48[UP5];x-x,36-36[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	GUAAACAAAUACAGUUUUAUGA&AUAUAGAAUUGU-UUUGUUUAU	1	0.108693460078164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN51345_c0_g1_39_TPlot.pdf
TRINITY_DN51345_c0_g1:40	si_a398	TRINITY_DN51345_c0_g1	28	49	40	-22.40	-14.60	0.651785714285714	7	3-13,47-37;14-21,35-28	1-2,49-48[UP5];x-x,36-36[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UAAACAAAUACAGUUUUAUGAA&AAUAUAGAAUUGU-UUUGUUUA	2	0.999999928517184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN51345_c0_g1_40_TPlot.pdf
TRINITY_DN5134_c0_g1:331	si_a403	TRINITY_DN5134_c0_g1	320	340	331	-22.00	-17.10	0.777272727272727	7	2-8,339-333;11-21,330-320	1-1,340-340[UP5];9-10,332-331[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	GAAUAUGAACAUUACAAUUUC&AGAAUUGUUUUGUUUAUAUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5134_c0_g1_331_TPlot.pdf
TRINITY_DN5134_c0_g1:332	si_a402	TRINITY_DN5134_c0_g1	321	341	332	-22.40	-15.90	0.709821428571429	8.5	3-9,339-333;12-21,330-321	1-2,341-340[UP5];10-11,332-331[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	AAUAUGAACAUUACAAUUUCG&UAGAAUUGUUUUGUUUAUAUU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5134_c0_g1_332_TPlot.pdf
TRINITY_DN5134_c0_g1:372	si_s16	TRINITY_DN5134_c0_g1	361	381	372	-25.60	-18.50	0.72265625	11	1-10,381-372;13-19,369-363	11-12,371-370[SIL];20-21,362-361[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	CAGCGGUCACAGUGGUGGUAA&UUAUUACUAUAUUGAUUGCAA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN5134_c0_g1_372_TPlot.pdf
TRINITY_DN5134_c0_g1:374	si_s14	TRINITY_DN5134_c0_g1	363	383	374	-25.30	-18.00	0.711462450592885	10	3-12,381-372;15-21,369-363	1-2,383-382[UP5];13-14,371-370[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GCGGUCACAGUGGUGGUAAAC&UAUUAUUACUAUAUUGAUUGC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN5134_c0_g1_374_TPlot.pdf
TRINITY_DN5134_c0_g1:425	si_s662	TRINITY_DN5134_c0_g1	414	434	425	-35.40	-23.40	0.661016949152542	7.5	1-13,434-422;15-16,420-419	14-14,421-421[SIL];17-21,418-414[UP3]	.....((.(((((((((((((&))))))))))))).)).....	CCAACCACUUCGAUCCCUCGG&UCGGGGGAUCGAAUUGAUUAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN5134_c0_g1_425_TPlot.pdf
TRINITY_DN5134_c0_g1:427	si_s660	TRINITY_DN5134_c0_g1	416	436	427	-35.00	-23.40	0.668571428571428	9	3-15,434-422;17-18,420-419	1-2,436-435[UP5];16-16,421-421[SIL];19-21,418-416[UP3]	...((.(((((((((((((..&..))))))))))))).))...	AACCACUUCGAUCCCUCGGGC&AAUCGGGGGAUCGAAUUGAUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN5134_c0_g1_427_TPlot.pdf
TRINITY_DN5134_c0_g1:672	si_a363	TRINITY_DN5134_c0_g1	661	681	672	-26.40	-18.70	0.708333333333333	5.5	1-6,681-676;8-21,674-661	7-7,675-675[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	AUUUUUGAUUUGAUGAAAGUG&UAUUUUGAUCGGAUCAAAAAU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN5134_c0_g1_672_TPlot.pdf
TRINITY_DN5135_c1_g1:711	si_a75	TRINITY_DN5135_c1_g1	700	720	711	-21.30	-15.20	0.713615023474178	5.5	2-5,719-716;7-20,714-701	1-1,720-720[UP5];6-6,715-715[SIL];21-21,700-700[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	AUAGUAAUGAGAAACCAUUUA&CAAAUUGUUUUUCAUUAUUAA	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN5135_c1_g1_711_TPlot.pdf
TRINITY_DN5136_c0_g2:1734	si_s86	TRINITY_DN5136_c0_g2	1723	1744	1734	-32.90	-21.60	0.656534954407295	10	3-9,1742-1736;11-12,1733-1732;14-21,1730-1723	1-2,1744-1743[UP5];10-10,1735-1734[AILt];13-13,1731-1731[SIL]	((((((((.((..(((((((..&..)))))))-.)).))))))))	GGUGAAGAUGAUCGAGAGGACU&UUUCCUUUC-UUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5136_c0_g2_1734_TPlot.pdf
TRINITY_DN5136_c0_g2:2358	si_a66	TRINITY_DN5136_c0_g2	2348	2368	2358	-26.70	-17.70	0.662921348314607	8.5	1-2,2368-2367;3-10,2365-2358;13-20,2356-2349	x-x,2366-2366[BULt];11-12,2357-2357[AILq];21-21,2348-2348[UP3]	.((((((((.-((((((((.((&))-))))))))..)))))))).	CGAGACGAUG-GAAAGAAGACG&CG-CUUCUUUCAAAUUGUUUUU	2	0.99999998922054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5136_c0_g2_2358_TPlot.pdf
TRINITY_DN5136_c0_g2:2447	si_a495	TRINITY_DN5136_c0_g2	2429	2456	2447	-31.90	-20.90	0.655172413793103	17	5-16,2452-2441;17-21,2433-2429	1-4,2456-2453[UP5];x-x,2440-2434[BULt]	(((((.......((((((((((((....&....))))))))))))-------)))))	GGAAGUUGAGAAGCGGGAGACGACGACA&AUAUGUCGUUUUUCGU-------CUUCC	4	0.999999999994725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5136_c0_g2_2447_TPlot.pdf
TRINITY_DN5136_c2_g1:691	si_a784	TRINITY_DN5136_c2_g1	680	701	691	-24.70	-16.50	0.668016194331984	10.5	1-7,701-695;8-16,693-685	x-x,694-694[BULt];17-21,684-680[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	AAUAAAGAGAGGUAUGGAGAGU&ACUCUUC-UAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5136_c2_g1_691_TPlot.pdf
TRINITY_DN5136_c2_g1:693	si_a782	TRINITY_DN5136_c2_g1	682	703	693	-26.40	-17.50	0.662878787878788	9	2-9,702-695;10-18,693-685	1-1,703-703[UP5];x-x,694-694[BULt];19-21,684-682[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	UAAAGAGAGGUAUGGAGAGUUU&CAACUCUUC-UAUUUUUCUAUU	2	0.999986682428738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN5136_c2_g1_693_TPlot.pdf
TRINITY_DN5137_c0_g1:1228	si_s435	TRINITY_DN5137_c0_g1	1215	1237	1228	-20.90	-13.60	0.650717703349282	7	1-12,1237-1226;13-16,1223-1220;18-21,1218-1215	x-x,1225-1224[BULt];17-17,1219-1219[SIL]	((((.((((..((((((((((((&))))))))))))--)))).))))	AUAUUUAAUUUGUGUAGUUAUUG&CAAUAAUUACAU--AUUAUAUAU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN5137_c0_g1_1228_TPlot.pdf
TRINITY_DN5137_c0_g1:1230	si_s433	TRINITY_DN5137_c0_g1	1219	1239	1230	-21.10	-15.90	0.753554502369668	7.5	1-15,1239-1225	16-21,1224-1219[UP3]	......(((((((((((((((&)))))))))))))))......	UUAAUUUGUGUAGUUAUUGUU&AACAAUAAUUACAUAUUAUAU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN5137_c0_g1_1230_TPlot.pdf
TRINITY_DN5137_c0_g1:1234	si_s429	TRINITY_DN5137_c0_g1	1223	1243	1234	-21.10	-18.00	0.853080568720379	7	3-19,1241-1225	1-2,1243-1242[UP5];20-21,1224-1223[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UUUGUGUAGUUAUUGUUGUUC&AUAUAACAAUAAUUACAUAUU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN5137_c0_g1_1234_TPlot.pdf
TRINITY_DN5137_c0_g1:1236	si_s427	TRINITY_DN5137_c0_g1	1225	1245	1236	-23.00	-17.90	0.778260869565217	9	5-21,1241-1225	1-4,1245-1242[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGUGUAGUUAUUGUUGUUCUU&CUAUAUAACAAUAAUUACAUA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN5137_c0_g1_1236_TPlot.pdf
TRINITY_DN5138_c0_g1:1590	si_s307	TRINITY_DN5138_c0_g1	1579	1597	1590	-32.90	-22.80	0.693009118541034	7.5	1-2,1597-1596;4-6,1594-1592;9-21,1591-1579	3-3,1595-1595[SIL];7-8,x-x[BULq]	(((((((((((((--(((.((&)).)))..)))))))))))))	AGAGGGACAGGAU--UCGGAA&UUGCGAAAAUUCUGUCCUUCU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN5138_c0_g1_1590_TPlot.pdf
TRINITY_DN5138_c0_g1:1596	si_a64	TRINITY_DN5138_c0_g1	1583	1605	1596	-29.40	-19.26	0.655102040816327	11.5	1-12,1605-1594;16-21,1588-1583	13-15,1593-1589[AILt]	((((((.....((((((((((((&))))))))))))--...))))))	GGACAGGAUUCGGAAGAGGUGAG&CUCGCUUCUUUC--AAAUUGUUU	3	0.999999800174655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN5138_c0_g1_1596_TPlot.pdf
TRINITY_DN5138_c0_g2:388	si_s316	TRINITY_DN5138_c0_g2	376	397	388	-31.50	-21.10	0.66984126984127	7	1-12,397-386;14-16,384-382;17-18,380-379	13-13,385-385[SIL];x-x,381-381[BULt];19-21,378-376[UP3]	...((.(((.((((((((((((&)))))))))))).)))-))...	AGGGUCAACCAGAGGGACAGGA&UUCUGUCCUUCUUGUU-ACAAA	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN5138_c0_g2_388_TPlot.pdf
TRINITY_DN5138_c0_g2:393	si_s311	TRINITY_DN5138_c0_g2	382	402	393	-30.60	-22.20	0.725490196078431	7.5	4-17,399-386;19-21,384-382	1-3,402-400[UP5];18-18,385-385[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	AACCAGAGGGACAGGAUUCGG&GAAAAUUCUGUCCUUCUUGUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN5138_c0_g2_393_TPlot.pdf
TRINITY_DN5138_c0_g2:394	si_s310	TRINITY_DN5138_c0_g2	383	401	394	-32.10	-22.70	0.707165109034268	6.5	1-3,401-399;6-18,398-386;20-21,384-383	4-5,x-x[BULq];19-19,385-385[SIL]	((.(((((((((((((--(((&)))..))))))))))))).))	ACCAGAGGGACAGGAU--UCG&CGAAAAUUCUGUCCUUCUUGU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN5138_c0_g2_394_TPlot.pdf
TRINITY_DN5140_c0_g1:153	si_s520	TRINITY_DN5140_c0_g1	142	162	153	-24.00	-16.00	0.666666666666667	8	1-6,162-157;9-18,154-145	7-8,156-155[SIL];19-21,144-142[UP3]	...((((((((((..((((((&))))))..))))))))))...	GGCUGAUUUCGAAAAAGGAAU&AUUCUUAAUUCGAAAUCAUUU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN5140_c0_g1_153_TPlot.pdf
TRINITY_DN5140_c0_g1:284	si_a68	TRINITY_DN5140_c0_g1	273	296	284	-25.40	-16.70	0.65748031496063	10	1-5,296-292;6-19,288-275	x-x,291-289[BULt];20-21,274-273[UP3]	..((((((((((((((...(((((&)))))---))))))))))))))..	UUAAAGACGAUUUGGACGUAGAAG&CUUCU---UUCAAAUUGUUUUUCA	3	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5140_c0_g1_284_TPlot.pdf
TRINITY_DN5140_c0_g1:499	si_a637	TRINITY_DN5140_c0_g1	489	508	499	-25.80	-17.20	0.666666666666667	7	1-11,508-498;13-19,497-491	12-12,x-x[BULq];20-21,490-489[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	GGGUUAUUC-AAGAAAUUGAC&GUCGAUUUUUUUGAGUAAUAU	0	0.365406093294373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN5140_c0_g1_499_TPlot.pdf
TRINITY_DN5140_c0_g1:500	si_a636	TRINITY_DN5140_c0_g1	490	509	500	-26.30	-17.30	0.657794676806084	6	2-12,508-498;14-20,497-491	1-1,509-509[UP5];13-13,x-x[BULq];21-21,490-490[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	GGUUAUUC-AAGAAAUUGACG&UGUCGAUUUUUUUGAGUAAUA	2	0.999999024306661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN5140_c0_g1_500_TPlot.pdf
TRINITY_DN5141_c0_g1:153	si_s803	TRINITY_DN5141_c0_g1	141	162	153	-26.00	-17.20	0.661538461538462	10	3-5,160-158;7-11,156-152;12-21,150-141	1-2,162-161[UP5];6-6,157-157[SIL];x-x,151-151[BULt]	((((((((((.(((((.(((..&..))).)))))-))))))))))	AGGAGGUGGCGGAAGAGGAAGA&AUUUUAUCUUC-GUUACCUUUU	3	0.999999999999839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5141_c0_g1_153_TPlot.pdf
TRINITY_DN5141_c0_g1:154	si_s77	TRINITY_DN5141_c0_g1	142	163	154	-25.50	-17.70	0.694117647058824	7.5	1-13,163-151;14-15,149-148;17-21,146-142	x-x,150-150[BULt];16-16,147-147[SIL]	(((((.((.(((((((((((((&)))))))))))))-)).)))))	GGAGGUGGCGGAAGAGGAAGAA&UUUUUUUUCUUUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5141_c0_g1_154_TPlot.pdf
TRINITY_DN5141_c0_g1:155	si_s76	TRINITY_DN5141_c0_g1	143	164	155	-23.60	-16.70	0.707627118644068	7	1-14,164-151;15-16,149-148;18-21,146-143	x-x,150-150[BULt];17-17,147-147[SIL]	((((.((.((((((((((((((&))))))))))))))-)).))))	GAGGUGGCGGAAGAGGAAGAAU&AUUUUUUUUCUUUC-CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5141_c0_g1_155_TPlot.pdf
TRINITY_DN5141_c0_g1:156	si_s75	TRINITY_DN5141_c0_g1	141	165	156	-24.00	-16.50	0.6875	9	1-15,165-151;16-21,146-141	x-x,150-147[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	AGGAGGUGGCGGAAGAGGAAGAAUG&UAUUUUUUUUCUUUC----CUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5141_c0_g1_156_TPlot.pdf
TRINITY_DN5141_c0_g1:157	si_s74	TRINITY_DN5141_c0_g1	142	166	157	-25.00	-18.70	0.748	9.5	1-16,166-151;17-21,146-142	x-x,150-147[BULt]	(((((....((((((((((((((((&))))))))))))))))----)))))	GGAGGUGGCGGAAGAGGAAGAAUGG&CUAUUUUUUUUCUUUC----CUUUC	2	0.999786299500334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5141_c0_g1_157_TPlot.pdf
TRINITY_DN5141_c0_g1:158	si_a789	TRINITY_DN5141_c0_g1	148	167	158	-24.80	-16.70	0.673387096774194	9	1-11,167-157;13-18,156-151	12-12,x-x[BULq];19-21,150-148[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GGCGGAAGA-GGAAGAAUGGG&UCUAUUUUUCUAUUUUCCAAU	2	0.999998159298689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN5141_c0_g1_158_TPlot.pdf
TRINITY_DN5141_c0_g1:159	si_s87	TRINITY_DN5141_c0_g1	147	168	159	-32.90	-23.30	0.708206686930091	7.5	2-4,167-165;6-17,163-152;18-20,150-148	1-1,168-168[UP5];5-5,164-164[SIL];x-x,151-151[BULt];21-21,147-147[UP3]	.(((.((((((((((((.(((.&.))).))))))))))))-))).	UGGCGGAAGAGGAAGAAUGGGU&UUCCUUUCUUCUUCUUC-GCUU	3	0.999999996296038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5141_c0_g1_159_TPlot.pdf
TRINITY_DN5141_c0_g1:160	si_s86	TRINITY_DN5141_c0_g1	148	169	160	-32.90	-23.30	0.708206686930091	8	3-5,167-165;7-18,163-152;19-21,150-148	1-2,169-168[UP5];6-6,164-164[SIL];x-x,151-151[BULt]	(((.((((((((((((.(((..&..))).))))))))))))-)))	GGCGGAAGAGGAAGAAUGGGUA&UUUCCUUUCUUCUUCUUC-GCU	2	0.99999570915035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5141_c0_g1_160_TPlot.pdf
TRINITY_DN5141_c0_g1:161	si_s70	TRINITY_DN5141_c0_g1	150	170	161	-25.80	-17.10	0.662790697674419	10.5	4-20,167-151	1-3,170-168[UP5];21-21,150-150[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGGAAGAGGAAGAAUGGGUAU&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5141_c0_g1_161_TPlot.pdf
TRINITY_DN5141_c0_g1:162	si_s69	TRINITY_DN5141_c0_g1	151	171	162	-23.40	-17.10	0.730769230769231	11.5	5-21,167-151	1-4,171-168[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAAGAGGAAGAAUGGGUAUU&AACUUCUAUUUUUUUUCUUUC	2	0.99999929404714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5141_c0_g1_162_TPlot.pdf
TRINITY_DN5141_c0_g1:163	si_s83	TRINITY_DN5141_c0_g1	152	172	163	-30.90	-20.20	0.653721682847896	12.5	6-8,167-165;10-21,163-152	1-5,172-168[UP5];9-9,164-164[SIL]	((((((((((((.(((.....&.....))).))))))))))))	GAAGAGGAAGAAUGGGUAUUC&UUCUUUCCUUUCUUCUUCUUC	0	0.826580229505212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5141_c0_g1_163_TPlot.pdf
TRINITY_DN5141_c0_g1:184	si_s1	TRINITY_DN5141_c0_g1	173	193	184	-18.70	-12.30	0.657754010695187	11.5	1-8,193-186;10-19,184-175	9-9,185-185[SIL];20-21,174-173[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	CUAUGAUGGGUGUUGUGGGGA&UUUUUAUAUUACUUAUUAUUA	4	0.999999999998831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN5141_c0_g1_184_TPlot.pdf
TRINITY_DN5141_c0_g1:192	si_s246	TRINITY_DN5141_c0_g1	180	201	192	-31.70	-21.10	0.665615141955836	11.5	4-13,198-189;14-19,187-182	1-3,201-199[UP5];x-x,188-188[BULt];20-21,181-180[UP3]	..((((((.((((((((((...&...))))))))))-))))))..	GGGUGUUGUGGGGAUGCCUCUU&AAUAGGCAUUUCC-CGAUAUAU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN5141_c0_g1_192_TPlot.pdf
TRINITY_DN51434_c0_g1:427	si_a80	TRINITY_DN51434_c0_g1	416	436	427	-22.10	-15.50	0.701357466063348	8	1-11,436-426;14-18,423-419	12-13,425-424[SIL];19-21,418-416[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	GGGUCUUAUGGGUGAAAAACA&UGUUUUUCAUUAUUAAGAAAA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN51434_c0_g1_427_TPlot.pdf
TRINITY_DN51434_c0_g1:430	si_a77	TRINITY_DN51434_c0_g1	419	439	430	-22.20	-16.00	0.720720720720721	6	3-14,437-426;17-21,423-419	1-2,439-438[UP5];15-16,425-424[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	UCUUAUGGGUGAAAAACAACA&AAUUGUUUUUCAUUAUUAAGA	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN51434_c0_g1_430_TPlot.pdf
TRINITY_DN51434_c0_g1:431	si_a76	TRINITY_DN51434_c0_g1	420	440	431	-21.20	-14.00	0.660377358490566	8	4-15,437-426;18-21,423-420	1-3,440-438[UP5];16-17,425-424[SIL]	((((..((((((((((((...&...))))))))))))..))))	CUUAUGGGUGAAAAACAACAA&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN51434_c0_g1_431_TPlot.pdf
TRINITY_DN51434_c0_g1:618	si_s532	TRINITY_DN51434_c0_g1	607	627	618	-28.70	-18.70	0.651567944250871	11.5	5-8,623-620;10-21,618-607	1-4,627-624[UP5];9-9,619-619[SIL]	((((((((((((.((((....&....)))).))))))))))))	UGGUUGGGUCAGCAAUGGAUC&AAAUCAUUUUUGAUCCGAUCA	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN51434_c0_g1_618_TPlot.pdf
TRINITY_DN51434_c0_g1:864	si_s75	TRINITY_DN51434_c0_g1	853	873	864	-24.00	-18.90	0.7875	7	1-16,873-858;18-21,856-853	17-17,857-857[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GGGGUGGAAAGAAAGGAGGUG&UAUUUUUUUUCUUUCCUUUCU	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN51434_c0_g1_864_TPlot.pdf
TRINITY_DN51434_c0_g1:867	si_s72	TRINITY_DN51434_c0_g1	856	876	867	-24.10	-22.00	0.912863070539419	7.5	1-19,876-858	20-21,857-856[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	GUGGAAAGAAAGGAGGUGGAG&UUCUAUUUUUUUUCUUUCCUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN51434_c0_g1_867_TPlot.pdf
TRINITY_DN51434_c0_g1:869	si_s70	TRINITY_DN51434_c0_g1	858	878	869	-25.80	-24.70	0.957364341085271	7	2-21,877-858	1-1,878-878[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GGAAAGAAAGGAGGUGGAGGC&ACUUCUAUUUUUUUUCUUUCC	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN51434_c0_g1_869_TPlot.pdf
TRINITY_DN51434_c0_g1:872	si_s67	TRINITY_DN51434_c0_g1	861	881	872	-25.60	-18.40	0.71875	10	2-2,880-880;5-21,877-861	1-1,881-881[UP5];3-4,879-878[SIL]	(((((((((((((((((..(.&.)..)))))))))))))))))	AAGAAAGGAGGUGGAGGCGGA&GCAACUUCUAUUUUUUUUCUU	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN51434_c0_g1_872_TPlot.pdf
TRINITY_DN51438_c0_g1:268	si_a175	TRINITY_DN51438_c0_g1	258	277	268	-33.40	-23.70	0.709580838323353	6.5	1-16,277-262;18-20,261-259	17-17,x-x[BULq];21-21,258-258[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	UGGA-GUUGUUUGGAUGGGUG&CACCCGUCUAGAUAAUAUCUU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN51438_c0_g1_268_TPlot.pdf
TRINITY_DN51438_c0_g1:269	si_a174	TRINITY_DN51438_c0_g1	259	278	269	-34.40	-23.70	0.688953488372093	6.5	2-17,277-262;19-21,261-259	1-1,278-278[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	GGA-GUUGUUUGGAUGGGUGU&UCACCCGUCUAGAUAAUAUCU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN51438_c0_g1_269_TPlot.pdf
TRINITY_DN51438_c0_g1:270	si_a173	TRINITY_DN51438_c0_g1	259	279	270	-33.80	-22.90	0.677514792899408	9.5	3-18,277-262	1-2,279-278[UP5];19-21,261-259[UP3]	...((((((((((((((((..&..))))))))))))))))...	GGAGUUGUUUGGAUGGGUGUU&UUCACCCGUCUAGAUAAUAUC	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN51438_c0_g1_270_TPlot.pdf
TRINITY_DN5143_c0_g1:1053	si_s577	TRINITY_DN5143_c0_g1	1037	1062	1053	-26.80	-18.00	0.671641791044776	8	1-13,1062-1050;14-20,1044-1038	x-x,1049-1045[BULt];21-21,1037-1037[UP3]	.(((((((.....(((((((((((((&)))))))))))))-----))))))).	ACUAUGGUUCUUCUUUUUUGUUCCUU&AAGGAAUAAAAAA-----AUCAUGGA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s577_TRINITY_DN5143_c0_g1_1053_TPlot.pdf
TRINITY_DN5143_c0_g1:1055	si_s575	TRINITY_DN5143_c0_g1	1039	1064	1055	-25.90	-19.00	0.733590733590734	7	1-15,1064-1050;16-21,1044-1039	x-x,1049-1045[BULt]	((((((.....(((((((((((((((&)))))))))))))))-----))))))	UAUGGUUCUUCUUUUUUGUUCCUUGU&ACAAGGAAUAAAAAA-----AUCAUG	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s575_TRINITY_DN5143_c0_g1_1055_TPlot.pdf
TRINITY_DN5143_c0_g1:1056	si_s574	TRINITY_DN5143_c0_g1	1040	1065	1056	-26.20	-19.10	0.729007633587786	7	1-16,1065-1050;17-21,1044-1040	x-x,1049-1045[BULt]	(((((.....((((((((((((((((&))))))))))))))))-----)))))	AUGGUUCUUCUUUUUUGUUCCUUGUU&GACAAGGAAUAAAAAA-----AUCAU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN5143_c0_g1_1056_TPlot.pdf
TRINITY_DN5143_c0_g1:1085	si_s87	TRINITY_DN5143_c0_g1	1074	1094	1085	-32.90	-21.50	0.653495440729483	9.5	3-8,1092-1087;10-14,1085-1081;16-21,1079-1074	1-2,1094-1093[UP5];9-9,1086-1086[SIL];15-15,1080-1080[SIL]	((((((.(((((.((((((..&..)))))).))))).))))))	GAGCGGCGGGGAUGAGAGGCA&UUCCUUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5143_c0_g1_1085_TPlot.pdf
TRINITY_DN5145_c0_g1:15	si_a545	TRINITY_DN5145_c0_g1	4	24	15	-28.10	-18.60	0.661921708185053	8	2-15,23-10	1-1,24-24[UP5];16-21,9-4[UP3]	......((((((((((((((.&.))))))))))))))......	AUCUGUAAAUAGAUUGAGCCC&CGGUUCAAUCUAUUUCUUUAU	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN5145_c0_g1_15_TPlot.pdf
TRINITY_DN51464_c0_g1:348	si_a629	TRINITY_DN51464_c0_g1	337	358	348	-26.30	-17.40	0.661596958174905	11	1-4,358-355;7-21,351-337	5-6,354-352[AILt]	(((((((((((((((...((((&))))-..)))))))))))))))	CAAGAGGGUUGACGUCACUGCG&CGUA-UUAUGUCGAUUUUUUUG	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN51464_c0_g1_348_TPlot.pdf
TRINITY_DN51467_c0_g1:128	si_a872	TRINITY_DN51467_c0_g1	116	137	128	-27.00	-20.20	0.748148148148148	5	1-11,137-127;12-19,125-118	x-x,126-126[BULt];20-21,117-116[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	GAAUUGCAACAUGAAUCUUUAA&UUAAAGAUUUA-GUUGCAAUCA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN51467_c0_g1_128_TPlot.pdf
TRINITY_DN51467_c0_g1:131	si_a869	TRINITY_DN51467_c0_g1	119	140	131	-24.80	-19.00	0.766129032258065	6.5	4-14,137-127;15-21,125-119	1-3,140-138[UP5];x-x,126-126[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	UUGCAACAUGAAUCUUUAAACC&UUAUUAAAGAUUUA-GUUGCAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN51467_c0_g1_131_TPlot.pdf
TRINITY_DN51467_c0_g1:132	si_a868	TRINITY_DN51467_c0_g1	120	141	132	-24.80	-18.20	0.733870967741935	8.5	5-15,137-127;16-21,125-120	1-4,141-138[UP5];x-x,126-126[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	UGCAACAUGAAUCUUUAAACCA&AUUAUUAAAGAUUUA-GUUGCA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN51467_c0_g1_132_TPlot.pdf
TRINITY_DN51467_c0_g1:341	si_s39	TRINITY_DN51467_c0_g1	330	348	341	-22.30	-15.40	0.690582959641256	8	1-6,348-343;9-20,342-331	7-8,x-x[BULq];21-21,330-330[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	UGGUCCAAUUGUU--GGAUUU&AAAUCUUUAAUAAUUGGAUUU	3	0.999356456905946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN51467_c0_g1_341_TPlot.pdf
TRINITY_DN51467_c0_g1:342	si_s38	TRINITY_DN51467_c0_g1	331	349	342	-22.70	-15.40	0.6784140969163	8	2-7,348-343;10-21,342-331	1-1,349-349[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GGUCCAAUUGUU--GGAUUUC&UAAAUCUUUAAUAAUUGGAUU	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN51467_c0_g1_342_TPlot.pdf
TRINITY_DN51480_c0_g1:115	si_s482	TRINITY_DN51480_c0_g1	104	124	115	-21.20	-15.10	0.712264150943396	8.5	4-19,121-106	1-3,124-122[UP5];20-21,105-104[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGGUUUAAAUAAAUAUGGAGG&AUCCUAUAUUUAUUUAAAUAU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN51480_c0_g1_115_TPlot.pdf
TRINITY_DN51480_c0_g1:1388	si_a25	TRINITY_DN51480_c0_g1	1375	1397	1388	-26.50	-17.30	0.652830188679245	8	1-10,1397-1388;11-14,1386-1383;15-21,1381-1375	x-x,1387-1387[BULt];x-x,1382-1382[BULt]	(((((((.((((.((((((((((&))))))))))-))))-)))))))	GGUUUUGUGAACUUGAAAGUGGA&UUUAUUUUUA-GUUC-UAAGACC	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN51480_c0_g1_1388_TPlot.pdf
TRINITY_DN51480_c0_g1:592	si_a710	TRINITY_DN51480_c0_g1	580	601	592	-28.00	-21.90	0.782142857142857	6.5	1-2,601-600;4-11,598-591;12-21,589-580	3-3,599-599[SIL];x-x,590-590[BULt]	((((((((((.((((((((.((&)).))))))))-))))))))))	GUAGCGAUUGUUUUUGGAGAGU&ACAUUCCAAAA-UAAUCGUUAC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a710_TRINITY_DN51480_c0_g1_592_TPlot.pdf
TRINITY_DN51480_c0_g1:781	si_a154	TRINITY_DN51480_c0_g1	770	790	781	-27.00	-19.80	0.733333333333333	10	1-4,790-787;7-17,784-774	5-6,786-785[SIL];18-21,773-770[UP3]	....(((((((((((..((((&))))..)))))))))))....	AACCGAUUGGCCUUAUUACGA&UUGUUUUAAGGUCAAUCUAUU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN51480_c0_g1_781_TPlot.pdf
TRINITY_DN51480_c0_g1:784	si_a151	TRINITY_DN51480_c0_g1	773	793	784	-28.90	-19.80	0.685121107266436	11.5	4-7,790-787;10-20,784-774	1-3,793-791[UP5];8-9,786-785[SIL];21-21,773-773[UP3]	.(((((((((((..((((...&...))))..))))))))))).	CGAUUGGCCUUAUUACGAAUU&UUGUUGUUUUAAGGUCAAUCU	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN51480_c0_g1_784_TPlot.pdf
TRINITY_DN51480_c0_g1:785	si_a150	TRINITY_DN51480_c0_g1	774	794	785	-29.90	-19.50	0.652173913043478	12.5	5-8,790-787;11-21,784-774	1-4,794-791[UP5];9-10,786-785[SIL]	(((((((((((..((((....&....))))..)))))))))))	GAUUGGCCUUAUUACGAAUUA&GUUGUUGUUUUAAGGUCAAUC	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN51480_c0_g1_785_TPlot.pdf
TRINITY_DN51480_c0_g1:840	si_a408	TRINITY_DN51480_c0_g1	826	849	840	-20.10	-14.90	0.741293532338308	8.5	1-13,849-837;14-20,833-827	x-x,836-834[BULt];21-21,826-826[UP3]	.(((((((...(((((((((((((&)))))))))))))---))))))).	GAUUUGAAAUUUAUGAACGAGGCA&UGUUUUGUUUAUA---UUUAAAUA	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN51480_c0_g1_840_TPlot.pdf
TRINITY_DN51480_c0_g1:845	si_a403	TRINITY_DN51480_c0_g1	834	854	845	-22.00	-17.50	0.795454545454545	8.5	1-18,854-837	19-21,836-834[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUUUAUGAACGAGGCAGUUUU&AGAAUUGUUUUGUUUAUAUUU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN51480_c0_g1_845_TPlot.pdf
TRINITY_DN51480_c0_g1:846	si_a402	TRINITY_DN51480_c0_g1	835	855	846	-22.40	-18.30	0.816964285714286	8	1-19,855-837	20-21,836-835[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUAUGAACGAGGCAGUUUUG&UAGAAUUGUUUUGUUUAUAUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN51480_c0_g1_846_TPlot.pdf
TRINITY_DN5148_c0_g1:740	si_s82	TRINITY_DN5148_c0_g1	728	749	740	-28.90	-20.30	0.70242214532872	10	5-12,745-738;13-21,736-728	1-4,749-746[UP5];x-x,737-737[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	AAGAAGAAGAAGAGGAAAUUGU&UUUCUUUCCUUU-CUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5148_c0_g1_740_TPlot.pdf
TRINITY_DN5149_c0_g1:2085	si_s148	TRINITY_DN5149_c0_g1	2075	2095	2085	-34.80	-23.10	0.663793103448276	7.5	1-4,2095-2092;5-8,2090-2087;11-18,2084-2077;20-21,2076-2075	x-x,2091-2091[BULt];9-10,2086-2085[SIL];19-19,x-x[BULq]	((-((((((((..((((.((((&))))-))))..)))))))).))	CA-GAGCCUCCGAUGGGAUUUU&AAAA-CCCAAAGGAGGUUCAUG	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s148_TRINITY_DN5149_c0_g1_2085_TPlot.pdf
TRINITY_DN5149_c0_g1:2295	si_s536	TRINITY_DN5149_c0_g1	2284	2304	2295	-27.70	-18.60	0.671480144404332	10.5	3-16,2302-2289	1-2,2304-2303[UP5];17-21,2288-2284[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUCCGAUUGGAUCGAGAAGG&CAUUUUUGAUCCGAUCAAAAU	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN5149_c0_g1_2295_TPlot.pdf
TRINITY_DN5149_c0_g1:2879	si_a329	TRINITY_DN5149_c0_g1	2866	2889	2879	-29.60	-19.30	0.652027027027027	8	2-9,2888-2881;10-17,2879-2872;18-18,2870-2870;19-21,2868-2866	1-1,2889-2889[UP5];x-x,2880-2880[BULt];x-x,2871-2871[BULt];x-x,2869-2869[BULt]	(((.(.((((((((.((((((((.&.))))))))-))))))))-)-)))	CGGUGUACAAGGAAUUGAAGAGAA&AUUUUUUUA-UUCCUUGU-C-CCG	2	0.999998600197197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5149_c0_g1_2879_TPlot.pdf
TRINITY_DN5149_c0_g1:2886	si_s896	TRINITY_DN5149_c0_g1	2875	2895	2886	-31.60	-25.90	0.819620253164557	7.5	4-20,2892-2876	1-3,2895-2893[UP5];21-21,2875-2875[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGGAAUUGAAGAGAAGGCAGA&UAGGCUUUCUCUUCAAUUUCA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5149_c0_g1_2886_TPlot.pdf
TRINITY_DN514_c0_g1:1360	si_a635	TRINITY_DN514_c0_g1	1350	1370	1360	-26.10	-17.10	0.655172413793103	4.5	1-9,1370-1362;10-17,1360-1353;19-21,1352-1350	x-x,1361-1361[BULt];18-18,x-x[BULq]	(((-((((((((.(((((((((&)))))))))-)))))))).)))	GUU-CUCAAAAAUAAUCGAUAU&AUGUCGAUU-UUUUUGAGUAAU	3	0.999999999999878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN514_c0_g1_1360_TPlot.pdf
TRINITY_DN5150_c0_g1:774	si_a410	TRINITY_DN5150_c0_g1	763	783	774	-17.80	-12.00	0.674157303370786	9	1-5,783-779;8-18,776-766	6-7,778-777[SIL];19-21,765-763[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	AGAAUUUAAAUAUAUUCAGGA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999820446701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5150_c0_g1_774_TPlot.pdf
TRINITY_DN5151_c0_g1:5522	si_a285	TRINITY_DN5151_c0_g1	5511	5531	5522	-28.30	-19.80	0.699646643109541	12	3-13,5529-5519	1-2,5531-5530[UP5];14-21,5518-5511[UP3]	........(((((((((((..&..)))))))))))........	GAUGGCUCUCCGAGCGAUCGG&AAGAUCGCUUGGAUUUAAAAA	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN5151_c0_g1_5522_TPlot.pdf
TRINITY_DN5151_c0_g1:5523	si_a284	TRINITY_DN5151_c0_g1	5512	5532	5523	-28.30	-19.80	0.699646643109541	13	4-14,5529-5519	1-3,5532-5530[UP5];15-21,5518-5512[UP3]	.......(((((((((((...&...))))))))))).......	AUGGCUCUCCGAGCGAUCGGC&AAAGAUCGCUUGGAUUUAAAA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN5151_c0_g1_5523_TPlot.pdf
TRINITY_DN5151_c0_g1:5524	si_a283	TRINITY_DN5151_c0_g1	5513	5533	5524	-28.30	-19.80	0.699646643109541	14	5-15,5529-5519	1-4,5533-5530[UP5];16-21,5518-5513[UP3]	......(((((((((((....&....)))))))))))......	UGGCUCUCCGAGCGAUCGGCG&AAAAGAUCGCUUGGAUUUAAA	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN5151_c0_g1_5524_TPlot.pdf
TRINITY_DN5151_c0_g1:5525	si_a282	TRINITY_DN5151_c0_g1	5514	5534	5525	-30.30	-19.80	0.653465346534653	14.5	6-16,5529-5519	1-5,5534-5530[UP5];17-21,5518-5514[UP3]	.....(((((((((((.....&.....))))))))))).....	GGCUCUCCGAGCGAUCGGCGG&GAAAAGAUCGCUUGGAUUUAA	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN5151_c0_g1_5525_TPlot.pdf
TRINITY_DN5151_c0_g1:5527	si_a280	TRINITY_DN5151_c0_g1	5516	5534	5527	-32.10	-20.88	0.650467289719626	12.5	2-3,5533-5532;8-18,5529-5519	1-1,5534-5534[UP5];4-7,5531-5530[AILq];19-21,5518-5516[UP3]	...(((((((((((..--((.&.))....)))))))))))...	CUCUCCGAGCGAUCGG--CGG&ACGAAAAGAUCGCUUGGAUUU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN5151_c0_g1_5527_TPlot.pdf
TRINITY_DN5151_c0_g1:5530	si_a277	TRINITY_DN5151_c0_g1	5519	5537	5530	-36.40	-24.48	0.672527472527473	10.5	1-3,5537-5535;5-6,5533-5532;11-21,5529-5519	4-4,5534-5534[SIL];7-10,5531-5530[AILq]	(((((((((((..--((.(((&))).))....)))))))))))	UCCGAGCGAUCGG--CGGAGG&CCUACGAAAAGAUCGCUUGGA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a277_TRINITY_DN5151_c0_g1_5530_TPlot.pdf
TRINITY_DN5152_c0_g1:1757	si_a496	TRINITY_DN5152_c0_g1	1746	1765	1757	-32.40	-23.60	0.728395061728395	10.5	3-8,1763-1758;11-21,1756-1746	1-2,1765-1764[UP5];9-10,1757-1757[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	AGGAAGGCGGAC-GCGGCAAU&UAUGUCGUUUUUCGUCUUCCU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5152_c0_g1_1757_TPlot.pdf
TRINITY_DN51533_c0_g1:194	si_a68	TRINITY_DN51533_c0_g1	183	205	194	-25.40	-16.58	0.652755905511811	11	1-2,205-204;4-9,202-197;12-21,192-183	3-3,203-203[SIL];10-11,196-193[AILt]	((((((((((....((((((.((&)).))))))--..))))))))))	UGAAAAACAACAUGUGAAAGUGG&CUUCUUUCA--AAUUGUUUUUCA	2	0.999999999276151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN51533_c0_g1_194_TPlot.pdf
TRINITY_DN51535_c0_g1:117	si_s40	TRINITY_DN51535_c0_g1	106	126	117	-24.30	-16.70	0.687242798353909	8	3-11,124-116;13-18,114-109;20-21,107-106	1-2,126-125[UP5];12-12,115-115[SIL];19-19,108-108[SIL]	((.((((((.(((((((((..&..))))))))).)))))).))	GAUAUCCAAAUAUUGGAGAGG&AAUCUUUAAUAAUUGGAUUUC	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN51535_c0_g1_117_TPlot.pdf
TRINITY_DN5153_c0_g1:1035	si_a79	TRINITY_DN5153_c0_g1	1024	1044	1035	-22.20	-14.90	0.671171171171171	8.5	1-2,1044-1043;4-12,1041-1033;14-19,1031-1026	3-3,1042-1042[SIL];13-13,1032-1032[SIL];20-21,1025-1024[UP3]	..((((((.(((((((((.((&)).))))))))).))))))..	GAUCUUGAAGAUGAAGAAGGA&UUGUUUUUCAUUAUUAAGAAA	3	0.999999532366031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN5153_c0_g1_1035_TPlot.pdf
TRINITY_DN5153_c0_g1:1396	si_s94	TRINITY_DN5153_c0_g1	1385	1407	1396	-35.50	-23.70	0.667605633802817	9.5	1-5,1407-1403;6-16,1400-1390;18-19,1388-1387	x-x,1402-1401[BULt];17-17,1389-1389[SIL];20-21,1386-1385[UP3]	..((.(((((((((((..(((((&)))))--))))))))))).))..	CCAUGCGGAGCGAGGAGCAGGAG&CUUCU--UCUUCGCUUCGGAUUG	2	0.999911685974573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN5153_c0_g1_1396_TPlot.pdf
TRINITY_DN5155_c0_g1:2277	si_s73	TRINITY_DN5155_c0_g1	2266	2286	2277	-24.00	-16.30	0.679166666666667	11	5-19,2282-2268	1-4,2286-2283[UP5];20-21,2267-2266[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUAGGAAAGAAAAAGGAGAAA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5155_c0_g1_2277_TPlot.pdf
TRINITY_DN5156_c0_g1:1114	si_s70	TRINITY_DN5156_c0_g1	1103	1124	1114	-25.80	-18.20	0.705426356589147	6.5	2-6,1123-1119;7-11,1117-1113;14-21,1110-1103	1-1,1124-1124[UP5];x-x,1118-1118[BULt];12-13,1112-1111[SIL]	((((((((..(((((.(((((.&.)))))-)))))..))))))))	GGGAAGAAUUAAAAUCAGAAGC&ACUUCU-AUUUUUUUUCUUUCC	3	0.999999999960253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5156_c0_g1_1114_TPlot.pdf
TRINITY_DN51576_c0_g1:394	si_s601	TRINITY_DN51576_c0_g1	383	403	394	-28.30	-19.80	0.699646643109541	10	3-14,401-390	1-2,403-402[UP5];15-21,389-383[UP3]	.......((((((((((((..&..)))))))))))).......	UUCUAACAGAUUCGCUUGGUU&AUCCAAGCGAAUCUUUUUUAA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN51576_c0_g1_394_TPlot.pdf
TRINITY_DN51576_c0_g1:398	si_s597	TRINITY_DN51576_c0_g1	387	407	398	-28.40	-19.80	0.697183098591549	14	7-18,401-390	1-6,407-402[UP5];19-21,389-387[UP3]	...((((((((((((......&......))))))))))))...	AACAGAUUCGCUUGGUUACUA&AUAAAUCCAAGCGAAUCUUUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN51576_c0_g1_398_TPlot.pdf
TRINITY_DN5157_c0_g1:1950	si_a502	TRINITY_DN5157_c0_g1	1939	1959	1950	-32.10	-22.30	0.694704049844237	5.5	1-11,1959-1949;13-19,1947-1941	12-12,1948-1948[SIL];20-21,1940-1939[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	ACUUUAGGGCAGACGAAAAAC&GUUUUUCGUCUUCCUUGGAAU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN5157_c0_g1_1950_TPlot.pdf
TRINITY_DN5157_c0_g1:1951	si_a501	TRINITY_DN5157_c0_g1	1940	1960	1951	-33.50	-22.70	0.677611940298507	4.5	2-12,1959-1949;14-20,1947-1941	1-1,1960-1960[UP5];13-13,1948-1948[SIL];21-21,1940-1940[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	CUUUAGGGCAGACGAAAAACU&CGUUUUUCGUCUUCCUUGGAA	2	0.999946983306736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5157_c0_g1_1951_TPlot.pdf
TRINITY_DN5157_c0_g1:406	si_s692	TRINITY_DN5157_c0_g1	395	415	406	-24.20	-16.80	0.694214876033058	8.5	2-5,414-411;7-20,409-396	1-1,415-415[UP5];6-6,410-410[SIL];21-21,395-395[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UAUGGGUCGGCUAAUGGAAUA&AGUUUAAUUAGUCGAUUUAUU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN5157_c0_g1_406_TPlot.pdf
TRINITY_DN5158_c0_g1:2633	si_a647	TRINITY_DN5158_c0_g1	2622	2642	2633	-29.50	-20.20	0.684745762711864	3.5	1-13,2642-2630;15-19,2628-2624	14-14,2629-2629[SIL];20-21,2623-2622[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	GCUUCUCAAUAUAUUACUCAA&UUGAGUAAUAUAUCGGGAAAU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN5158_c0_g1_2633_TPlot.pdf
TRINITY_DN5158_c0_g1:2634	si_a646	TRINITY_DN5158_c0_g1	2623	2643	2634	-29.40	-20.40	0.693877551020408	3.5	2-14,2642-2630;16-20,2628-2624	1-1,2643-2643[UP5];15-15,2629-2629[SIL];21-21,2623-2623[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	CUUCUCAAUAUAUUACUCAAG&UUUGAGUAAUAUAUCGGGAAA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN5158_c0_g1_2634_TPlot.pdf
TRINITY_DN5158_c0_g1:2636	si_a644	TRINITY_DN5158_c0_g1	2625	2645	2636	-29.30	-21.60	0.737201365187713	2.5	1-16,2645-2630;18-21,2628-2625	17-17,2629-2629[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UCUCAAUAUAUUACUCAAGAA&UUUUUGAGUAAUAUAUCGGGA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN5158_c0_g1_2636_TPlot.pdf
TRINITY_DN5158_c0_g1:2954	si_a122	TRINITY_DN5158_c0_g1	2943	2963	2954	-29.00	-19.40	0.668965517241379	5.5	2-18,2962-2946	1-1,2963-2963[UP5];19-21,2945-2943[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAAUAUUGUUAUAAAACAGGA&GCUUGUUUUAUAGCAAUAGUA	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN5158_c0_g1_2954_TPlot.pdf
TRINITY_DN5158_c0_g1:2955	si_a121	TRINITY_DN5158_c0_g1	2944	2964	2955	-29.30	-19.40	0.662116040955631	6.5	3-19,2962-2946	1-2,2964-2963[UP5];20-21,2945-2944[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAUAUUGUUAUAAAACAGGAA&AGCUUGUUUUAUAGCAAUAGU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN5158_c0_g1_2955_TPlot.pdf
TRINITY_DN51593_c0_g1:840	si_s7	TRINITY_DN51593_c0_g1	829	849	840	-21.70	-14.80	0.682027649769585	8	1-2,849-848;5-8,845-842;10-21,840-829	3-4,847-846[SIL];9-9,841-841[SIL]	((((((((((((.((((..((&))..)))).))))))))))))	AUAUAGUGAUAACGAGUUUUG&UAUUACUUAUUAUUACUAUAU	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN51593_c0_g1_840_TPlot.pdf
TRINITY_DN5159_c0_g1:1206	si_s527	TRINITY_DN5159_c0_g1	1195	1213	1206	-28.00	-18.28	0.652857142857143	10	2-5,1212-1209;10-21,1206-1195	1-1,1213-1213[UP5];6-9,1208-1207[AILq]	((((((((((((..--((((.&.))))....))))))))))))	GGAUCGAAGAUGCG--CGAAC&AUUCGAAAUCAUUUUUGAUCC	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN5159_c0_g1_1206_TPlot.pdf
TRINITY_DN5159_c0_g1:383	si_a308	TRINITY_DN5159_c0_g1	372	391	383	-32.70	-21.60	0.660550458715596	8	1-8,391-384;12-21,381-372	9-11,383-382[AILq]	((((((((((..-((((((((&))))))))...))))))))))	UAUGGGUAAAGA-GAGCGAAU&AUUCGCUUGGAUUUAUCCAUG	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN5159_c0_g1_383_TPlot.pdf
TRINITY_DN5159_c0_g1:794	si_s47	TRINITY_DN5159_c0_g1	782	803	794	-26.30	-18.72	0.711787072243346	7.5	2-14,802-790;18-21,785-782	1-1,803-803[UP5];15-17,789-786[AILt]	((((....(((((((((((((.&.)))))))))))))-...))))	CUGAACAGGAAGUCCAAUUGUA&AAUAAUUGGAUUUC-AAGUUAG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN5159_c0_g1_794_TPlot.pdf
TRINITY_DN5160_c0_g1:1682	si_s70	TRINITY_DN5160_c0_g1	1671	1691	1682	-25.80	-17.50	0.678294573643411	6.5	1-9,1691-1683;11-19,1681-1673	10-10,1682-1682[SIL];20-21,1672-1671[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	ACAGAGAAAAAUAGUGGAAGU&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5160_c0_g1_1682_TPlot.pdf
TRINITY_DN5160_c0_g1:1683	si_s69	TRINITY_DN5160_c0_g1	1672	1692	1683	-23.40	-17.80	0.760683760683761	6.5	2-10,1691-1683;12-20,1681-1673	1-1,1692-1692[UP5];11-11,1682-1682[SIL];21-21,1672-1672[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	CAGAGAAAAAUAGUGGAAGUG&AACUUCUAUUUUUUUUCUUUC	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5160_c0_g1_1683_TPlot.pdf
TRINITY_DN5160_c0_g1:1684	si_s68	TRINITY_DN5160_c0_g1	1673	1693	1684	-23.10	-17.80	0.770562770562771	7.5	3-11,1691-1683;13-21,1681-1673	1-2,1693-1692[UP5];12-12,1682-1682[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AGAGAAAAAUAGUGGAAGUGA&CAACUUCUAUUUUUUUUCUUU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5160_c0_g1_1684_TPlot.pdf
TRINITY_DN5160_c0_g1:1685	si_s67	TRINITY_DN5160_c0_g1	1674	1694	1685	-25.60	-17.10	0.66796875	8.5	4-12,1691-1683;14-21,1681-1674	1-3,1694-1692[UP5];13-13,1682-1682[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GAGAAAAAUAGUGGAAGUGAG&GCAACUUCUAUUUUUUUUCUU	3	0.999999999992594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN5160_c0_g1_1685_TPlot.pdf
TRINITY_DN5164_c0_g1:140	si_a499	TRINITY_DN5164_c0_g1	122	149	140	-35.20	-23.30	0.661931818181818	19.5	1-12,149-138;13-21,130-122	x-x,137-131[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	CUGGGGAAGUUUUAACAUGAAGGACGGC&GUCGUUUUUCGU-------CUUCCUUGG	4	0.999999999978531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5164_c0_g1_140_TPlot.pdf
TRINITY_DN5164_c0_g1:3007	si_s69	TRINITY_DN5164_c0_g1	2996	3013	3007	-23.40	-15.40	0.658119658119658	9.5	1-7,3013-3007;11-21,3006-2996	8-10,x-x[BULq]	(((((((((((---(((((((&)))))))...)))))))))))	GAAAGAGAAGA---AGGGGUU&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5164_c0_g1_3007_TPlot.pdf
TRINITY_DN5164_c0_g1:3067	si_a897	TRINITY_DN5164_c0_g1	3056	3076	3067	-21.20	-13.80	0.650943396226415	7	1-15,3076-3062	16-21,3061-3056[UP3]	......(((((((((((((((&)))))))))))))))......	CGAUUUUUACUUAUUAUUAUU&AGUAAUAAUAAGUAAUAUAAA	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN5164_c0_g1_3067_TPlot.pdf
TRINITY_DN5164_c0_g1:3068	si_a896	TRINITY_DN5164_c0_g1	3057	3077	3068	-21.60	-14.60	0.675925925925926	6.5	1-16,3077-3062	17-21,3061-3057[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAUUUUUACUUAUUAUUAUUG&UAGUAAUAAUAAGUAAUAUAA	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN5164_c0_g1_3068_TPlot.pdf
TRINITY_DN5164_c0_g1:3070	si_a894	TRINITY_DN5164_c0_g1	3059	3079	3070	-21.70	-17.00	0.783410138248848	5.5	1-18,3079-3062	19-21,3061-3059[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUUUUACUUAUUAUUAUUGUG&UAUAGUAAUAAUAAGUAAUAU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN5164_c0_g1_3070_TPlot.pdf
TRINITY_DN5164_c0_g1:3071	si_a893	TRINITY_DN5164_c0_g1	3060	3080	3071	-21.70	-18.60	0.857142857142857	5	1-19,3080-3062	20-21,3061-3060[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUUACUUAUUAUUAUUGUGU&AUAUAGUAAUAAUAAGUAAUA	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN5164_c0_g1_3071_TPlot.pdf
TRINITY_DN5164_c0_g1:3072	si_a892	TRINITY_DN5164_c0_g1	3061	3081	3072	-21.30	-18.80	0.882629107981221	5	2-20,3080-3062	1-1,3081-3081[UP5];21-21,3061-3061[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UUUACUUAUUAUUAUUGUGUA&AAUAUAGUAAUAAUAAGUAAU	1	0.00123122076507931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN5164_c0_g1_3072_TPlot.pdf
TRINITY_DN5164_c0_g1:3073	si_a891	TRINITY_DN5164_c0_g1	3062	3082	3073	-22.90	-18.70	0.816593886462882	6	3-21,3080-3062	1-2,3082-3081[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUACUUAUUAUUAUUGUGUAA&CAAUAUAGUAAUAAUAAGUAA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN5164_c0_g1_3073_TPlot.pdf
TRINITY_DN5164_c0_g1:3074	si_a890	TRINITY_DN5164_c0_g1	3063	3083	3074	-23.80	-17.80	0.747899159663866	8	4-21,3080-3063	1-3,3083-3081[UP5]	((((((((((((((((((...&...))))))))))))))))))	UACUUAUUAUUAUUGUGUAAU&UCAAUAUAGUAAUAAUAAGUA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN5164_c0_g1_3074_TPlot.pdf
TRINITY_DN51650_c0_g1:18	si_s297	TRINITY_DN51650_c0_g1	7	27	18	-29.80	-19.50	0.654362416107383	9	1-8,27-20;11-19,17-9	9-10,19-18[SIL];20-21,8-7[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	CUUUUUCGCAAGGUCAGUUGA&UCGAUUGGAAUUGCGAAAAUU	1	0.0613604488699827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN51650_c0_g1_18_TPlot.pdf
TRINITY_DN51650_c0_g1:19	si_s296	TRINITY_DN51650_c0_g1	8	28	19	-31.60	-23.00	0.727848101265823	8	1-9,28-20;12-20,17-9	10-11,19-18[SIL];21-21,8-8[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UUUUUCGCAAGGUCAGUUGAC&GUCGAUUGGAAUUGCGAAAAU	1	0.0105390927748612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN51650_c0_g1_19_TPlot.pdf
TRINITY_DN5165_c0_g1:1899	si_a468	TRINITY_DN5165_c0_g1	1888	1907	1899	-21.30	-14.40	0.676056338028169	7.5	3-6,1905-1902;8-21,1901-1888	1-2,1907-1906[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	UGACGAUGAUUACG-AUUACA&UAUAAUAUGUAAUUAUUGUUA	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN5165_c0_g1_1899_TPlot.pdf
TRINITY_DN5165_c0_g1:1919	si_s72	TRINITY_DN5165_c0_g1	1907	1928	1919	-24.10	-15.90	0.659751037344398	9.5	1-10,1928-1919;11-15,1917-1913;17-19,1911-1909	x-x,1918-1918[BULt];16-16,1912-1912[SIL];20-21,1908-1907[UP3]	..(((.(((((.((((((((((&))))))))))-))))).)))..	ACGGAUGGAAAUGGAAGUGGAA&UUCUAUUUUU-UUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5165_c0_g1_1919_TPlot.pdf
TRINITY_DN5165_c0_g1:2282	si_a447	TRINITY_DN5165_c0_g1	2269	2291	2282	-25.70	-16.90	0.657587548638132	9	3-14,2289-2278;15-20,2275-2270	1-2,2291-2290[UP5];x-x,2277-2276[BULt];21-21,2269-2269[UP3]	.((((((..((((((((((((..&..))))))))))))--)))))).	AGUAGCAAGACGAUUAUCUUAGU&UAUGAGAUAAUUGU--UGUUAUA	4	0.999923241221074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN5165_c0_g1_2282_TPlot.pdf
TRINITY_DN5168_c6_g1:130	si_a352	TRINITY_DN5168_c6_g1	119	139	130	-22.50	-15.60	0.693333333333333	4	1-17,139-123	18-21,122-119[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUUAAAAAUAGAAUUAAUAUU&AAUAUUAAUUCUAUUUUGAUC	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN5168_c6_g1_130_TPlot.pdf
TRINITY_DN516_c0_g1:1129	si_s463	TRINITY_DN516_c0_g1	1120	1138	1129	-31.90	-20.90	0.655172413793103	5.5	2-14,1137-1125;18-21,1123-1120	1-1,1138-1138[UP5];15-17,1124-1124[AILq]	((((.--(((((((((((((.&.)))))))))))))...))))	GUCCA--GGAUAUGGGAUAAA&AUUAUCUCAUAUCCAACGGAU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN516_c0_g1_1129_TPlot.pdf
TRINITY_DN51705_c0_g1:195	si_s82	TRINITY_DN51705_c0_g1	184	205	195	-28.90	-20.20	0.698961937716263	6	1-7,205-199;8-18,197-187	x-x,198-198[BULt];19-21,186-184[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	UAUAAGAAGGAAGGAAAAGAAA&UUUCUUU-CCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN51705_c0_g1_195_TPlot.pdf
TRINITY_DN51705_c0_g1:198	si_s75	TRINITY_DN51705_c0_g1	187	207	198	-24.00	-19.60	0.816666666666667	5.5	2-19,206-189	1-1,207-207[UP5];20-21,188-187[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAGAAGGAAGGAAAAGAAAUC&UAUUUUUUUUCUUUCCUUUCU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN51705_c0_g1_198_TPlot.pdf
TRINITY_DN51714_c0_g1:42	si_s78	TRINITY_DN51714_c0_g1	30	51	42	-26.20	-18.40	0.702290076335878	7.5	2-12,50-40;13-19,38-32	1-1,51-51[UP5];x-x,39-39[BULt];20-21,31-30[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	CUGAGAAAGAGGAAGAGAAAAG&UUUUUUUCUUUC-CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN51714_c0_g1_42_TPlot.pdf
TRINITY_DN51714_c0_g1:45	si_s75	TRINITY_DN51714_c0_g1	33	54	45	-24.00	-19.00	0.791666666666667	6.5	3-15,52-40;16-21,38-33	1-2,54-53[UP5];x-x,39-39[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAAAGAGGAAGAGAAAAGAGC&UAUUUUUUUUCUUUC-CUUUCU	2	0.998547150004088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN51714_c0_g1_45_TPlot.pdf
TRINITY_DN5172_c0_g1:471	si_s72	TRINITY_DN5172_c0_g1	460	480	471	-24.10	-16.70	0.692946058091286	5.5	1-3,480-478;5-15,476-466;18-21,463-460	4-4,477-477[SIL];16-17,465-464[SIL]	((((..(((((((((((.(((&))).)))))))))))..))))	GAGGUUAGAAAAGAAAUUGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5172_c0_g1_471_TPlot.pdf
TRINITY_DN51739_c0_g1:128	si_a714	TRINITY_DN51739_c0_g1	116	138	128	-31.90	-21.40	0.670846394984326	5.5	2-3,137-136;4-11,134-127;12-21,125-116	1-1,138-138[UP5];x-x,135-135[BULt];x-x,126-126[BULt]	((((((((((.((((((((.((.&.))-))))))))-))))))))))	UCGAGUAACGCAUUAUUUUCGGU&UCC-AAAAUAAU-CGUUACUCGG	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a714_TRINITY_DN51739_c0_g1_128_TPlot.pdf
TRINITY_DN5173_c0_g1:826	si_s439	TRINITY_DN5173_c0_g1	815	834	826	-21.50	-14.10	0.655813953488372	9.5	4-8,831-827;10-20,826-816	1-3,834-832[UP5];9-9,x-x[BULq];21-21,815-815[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	AGUUGUAUAUGA-AUGUAUAA&AAUUACAUAUUAUAUAUAACA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN5173_c0_g1_826_TPlot.pdf
TRINITY_DN5174_c1_g2:187	si_a143	TRINITY_DN5174_c1_g2	176	197	187	-25.10	-18.40	0.733067729083665	6	1-6,197-192;7-18,190-179	x-x,191-191[BULt];19-21,178-176[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CCAAAAACAACAACGAAUUGAU&AUUAAU-CGUUGUUGUUUUAAG	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN5174_c1_g2_187_TPlot.pdf
TRINITY_DN5174_c1_g2:188	si_a142	TRINITY_DN5174_c1_g2	177	198	188	-23.50	-18.70	0.795744680851064	6	2-7,197-192;8-19,190-179	1-1,198-198[UP5];x-x,191-191[BULt];20-21,178-177[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	CAAAAACAACAACGAAUUGAUG&AAUUAAU-CGUUGUUGUUUUAA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5174_c1_g2_188_TPlot.pdf
TRINITY_DN5174_c1_g2:190	si_a140	TRINITY_DN5174_c1_g2	179	200	190	-25.20	-18.40	0.73015873015873	8	4-9,197-192;10-21,190-179	1-3,200-198[UP5];x-x,191-191[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AAAACAACAACGAAUUGAUGAU&GUAAUUAAU-CGUUGUUGUUUU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN5174_c1_g2_190_TPlot.pdf
TRINITY_DN5175_c0_g1:1916	si_s99	TRINITY_DN5175_c0_g1	1904	1925	1916	-34.60	-22.80	0.658959537572254	10.5	3-14,1923-1912;15-18,1910-1907	1-2,1925-1924[UP5];x-x,1911-1911[BULt];19-21,1906-1904[UP3]	...((((.((((((((((((..&..))))))))))))-))))...	GACUCCAGGUCCGAGGUGGAAU&UCUUCGCUUCGGAU-UGGAAAA	4	0.999687580080934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN5175_c0_g1_1916_TPlot.pdf
TRINITY_DN5175_c0_g1:2748	si_s93	TRINITY_DN5175_c0_g1	2733	2759	2748	-34.80	-24.40	0.701149425287356	14.5	1-6,2759-2754;7-12,2751-2746;13-21,2741-2733	x-x,2753-2752[BULt];x-x,2745-2742[BULt]	(((((((((....((((((..((((((&))))))--))))))----)))))))))	GAUCCGAAGAGAACGAAGAAUGGGAGA&UCUUCU--UCUUCG----CUUCGGAUU	3	0.999970930827431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5175_c0_g1_2748_TPlot.pdf
TRINITY_DN5175_c0_g1:3373	si_s482	TRINITY_DN5175_c0_g1	3362	3382	3373	-21.20	-13.90	0.655660377358491	11.5	3-15,3380-3368	1-2,3382-3381[UP5];16-21,3367-3362[UP3]	......(((((((((((((..&..)))))))))))))......	AAACGAAGAUGGAUAUAGGGA&AUCCUAUAUUUAUUUAAAUAU	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN5175_c0_g1_3373_TPlot.pdf
TRINITY_DN5175_c0_g1:3542	si_a631	TRINITY_DN5175_c0_g1	3531	3551	3542	-25.70	-16.90	0.657587548638132	6.5	3-12,3549-3540;14-19,3538-3533	1-2,3551-3550[UP5];13-13,3539-3539[SIL];20-21,3532-3531[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	UACAGAAACAUCGACAUAACC&UAUUAUGUCGAUUUUUUUGAG	2	0.999959682260553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN5175_c0_g1_3542_TPlot.pdf
TRINITY_DN5175_c0_g1:3543	si_a630	TRINITY_DN5175_c0_g1	3532	3552	3543	-25.80	-16.90	0.655038759689922	7.5	4-13,3549-3540;15-20,3538-3533	1-3,3552-3550[UP5];14-14,3539-3539[SIL];21-21,3532-3532[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	ACAGAAACAUCGACAUAACCA&GUAUUAUGUCGAUUUUUUUGA	3	0.999999974655294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN5175_c0_g1_3543_TPlot.pdf
TRINITY_DN5175_c0_g1:656	si_a547	TRINITY_DN5175_c0_g1	645	665	656	-26.90	-17.68	0.65724907063197	8.5	1-4,665-662;6-9,660-657;13-21,653-645	5-5,661-661[SIL];10-12,656-654[SIL]	(((((((((...((((.((((&)))).))))...)))))))))	GGAUAAAGACAGAGAUAGAAC&GUUCAAUCUAUUUCUUUAUCU	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN5175_c0_g1_656_TPlot.pdf
TRINITY_DN5175_c0_g1:7036	si_a21	TRINITY_DN5175_c0_g1	7025	7045	7036	-24.30	-19.90	0.818930041152263	5	3-21,7043-7025	1-2,7045-7044[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUAGAACUAAAGAUAAGUAUC&CCUAUUUAUUUUUAGUUCUAA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN5175_c0_g1_7036_TPlot.pdf
TRINITY_DN5175_c0_g1:7037	si_a20	TRINITY_DN5175_c0_g1	7026	7046	7037	-26.70	-19.00	0.711610486891386	7	4-21,7043-7026	1-3,7046-7044[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAGAACUAAAGAUAAGUAUCG&GCCUAUUUAUUUUUAGUUCUA	2	0.942165400938476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN5175_c0_g1_7037_TPlot.pdf
TRINITY_DN5175_c0_g1:713	si_a316	TRINITY_DN5175_c0_g1	702	725	713	-26.30	-20.42	0.776425855513308	13	1-6,725-720;9-21,714-702	7-8,719-715[AILt]	(((((((((((((.....((((((&))))))---..)))))))))))))	AAAGAGAUCGUGGUUUAGAAGUCC&GGAUUU---AUCCAUGAUUUUUUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN5175_c0_g1_713_TPlot.pdf
TRINITY_DN51771_c0_g1:83	si_s300	TRINITY_DN51771_c0_g1	72	92	83	-29.70	-20.00	0.673400673400673	9	4-11,89-82;13-20,80-73	1-3,92-90[UP5];12-12,81-81[SIL];21-21,72-72[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	AAGAAUUUUGGCAAUUCUCAU&AUUGGAAUUGCGAAAAUUCUG	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s300_TRINITY_DN51771_c0_g1_83_TPlot.pdf
TRINITY_DN5177_c2_g1:734	si_s77	TRINITY_DN5177_c2_g1	723	746	734	-25.50	-17.20	0.674509803921569	10	1-7,746-740;8-18,736-726;20-21,724-723	x-x,739-737[BULt];19-19,725-725[SIL]	((.(((((((((((...(((((((&)))))))---))))))))))).))	GAUGGGAGGAAAGAUCCAGAAAGA&UUUUUUU---UCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5177_c2_g1_734_TPlot.pdf
TRINITY_DN5180_c0_g1:2525	si_s512	TRINITY_DN5180_c0_g1	2513	2534	2525	-24.80	-20.00	0.806451612903226	6.5	3-18,2532-2517;19-21,2515-2513	1-2,2534-2533[UP5];x-x,2516-2516[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	UCGAAAUUGAGGAUGUAGAAGA&AAUUCUAUAUUCUUAAUU-CGA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN5180_c0_g1_2525_TPlot.pdf
TRINITY_DN5180_c0_g1:2528	si_s509	TRINITY_DN5180_c0_g1	2517	2537	2528	-22.80	-16.70	0.732456140350877	11	6-21,2532-2517	1-5,2537-2533[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUUGAGGAUGUAGAAGAAGC&AACAAUUCUAUAUUCUUAAUU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN5180_c0_g1_2528_TPlot.pdf
TRINITY_DN5182_c0_g1:1122	si_a124	TRINITY_DN5182_c0_g1	1111	1131	1122	-25.10	-17.20	0.685258964143426	7	1-2,1131-1130;4-9,1128-1123;11-20,1121-1112	3-3,1129-1129[SIL];10-10,1122-1122[SIL];21-21,1111-1111[UP3]	.((((((((((.((((((.((&)).)))))).)))))))))).	UUUGCUGUUGCAAUGAAAGAA&UUGUUUUAUAGCAAUAGUAAU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN5182_c0_g1_1122_TPlot.pdf
TRINITY_DN5182_c0_g1:1123	si_a123	TRINITY_DN5182_c0_g1	1112	1132	1123	-26.60	-17.30	0.650375939849624	7	2-3,1131-1130;5-10,1128-1123;12-21,1121-1112	1-1,1132-1132[UP5];4-4,1129-1129[SIL];11-11,1122-1122[SIL]	((((((((((.((((((.((.&.)).)))))).))))))))))	UUGCUGUUGCAAUGAAAGAAU&CUUGUUUUAUAGCAAUAGUAA	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN5182_c0_g1_1123_TPlot.pdf
TRINITY_DN5182_c0_g1:1254	si_s805	TRINITY_DN5182_c0_g1	1245	1263	1254	-28.60	-19.60	0.685314685314685	7	1-11,1263-1253;14-21,1252-1245	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	GGAGGAGG--AUGAAGAUGAG&UUUAUCUUCGUUACCUUUUCU	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN5182_c0_g1_1254_TPlot.pdf
TRINITY_DN5182_c0_g1:2178	si_a49	TRINITY_DN5182_c0_g1	2166	2188	2178	-42.20	-27.50	0.651658767772512	11.5	2-5,2187-2184;8-10,2180-2178;12-12,2176-2176;13-21,2174-2166	1-1,2188-2188[UP5];6-7,2183-2181[AILt];11-11,2177-2177[SIL];x-x,2175-2175[BULt]	(((((((((.(.(((...((((.&.))))-..))).)-)))))))))	GGCGAGUCGCAGUCCCAUGACCA&AGGUC-UAGGAGU-CGACUCGCU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a49_TRINITY_DN5182_c0_g1_2178_TPlot.pdf
TRINITY_DN5182_c0_g1:2194	si_a318	TRINITY_DN5182_c0_g1	2183	2203	2194	-22.50	-15.90	0.706666666666667	10.5	4-16,2200-2188	1-3,2203-2201[UP5];17-21,2187-2183[UP3]	.....(((((((((((((...&...))))))))))))).....	UGACCAAAGUCAUGGAUAUAU&AUUUAUCCAUGAUUUUUUUAU	3	0.999998837114586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5182_c0_g1_2194_TPlot.pdf
TRINITY_DN5182_c0_g1:2195	si_a317	TRINITY_DN5182_c0_g1	2184	2204	2195	-24.30	-16.50	0.679012345679012	7	1-3,2204-2202;5-17,2200-2188	4-4,2201-2201[SIL];18-21,2187-2184[UP3]	....(((((((((((((.(((&))).)))))))))))))....	GACCAAAGUCAUGGAUAUAUU&GAUUUAUCCAUGAUUUUUUUA	3	0.999999602285272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN5182_c0_g1_2195_TPlot.pdf
TRINITY_DN5182_c0_g1:2199	si_a313	TRINITY_DN5182_c0_g1	2188	2208	2199	-28.70	-21.20	0.738675958188153	5.5	2-7,2207-2202;9-21,2200-2188	1-1,2208-2208[UP5];8-8,2201-2201[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	AAAGUCAUGGAUAUAUUCAGA&CUUGGAUUUAUCCAUGAUUUU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN5182_c0_g1_2199_TPlot.pdf
TRINITY_DN5182_c0_g1:2200	si_a312	TRINITY_DN5182_c0_g1	2189	2209	2200	-31.20	-20.40	0.653846153846154	7.5	3-8,2207-2202;10-21,2200-2189	1-2,2209-2208[UP5];9-9,2201-2201[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AAGUCAUGGAUAUAUUCAGAA&GCUUGGAUUUAUCCAUGAUUU	2	0.998227013304557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN5182_c0_g1_2200_TPlot.pdf
TRINITY_DN5182_c0_g1:4482	si_a344	TRINITY_DN5182_c0_g1	4471	4492	4482	-28.50	-18.62	0.653333333333333	11	2-8,4491-4485;12-20,4480-4472	1-1,4492-4492[UP5];9-11,4484-4481[AILt];21-21,4471-4471[UP3]	.(((((((((....(((((((.&.)))))))-...))))))))).	GAGAAUUAAUUUUGUUCGGGGA&GUCCCGAA-AAUAUUAAUUCUA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN5182_c0_g1_4482_TPlot.pdf
TRINITY_DN5183_c0_g1:371	si_a427	TRINITY_DN5183_c0_g1	361	380	371	-31.80	-20.80	0.654088050314465	10	4-9,377-372;11-16,370-365;18-21,364-361	1-3,380-378[UP5];10-10,371-371[SIL];17-17,x-x[BULq]	((((-((((((.((((((...&...)))))).)))))).))))	GUCC-GCGGAUGCUAUGUCCG&UAAAUAUAGGAUCCGUUGGAU	3	0.9947164656179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN5183_c0_g1_371_TPlot.pdf
TRINITY_DN5184_c0_g1:19	si_a142	TRINITY_DN5184_c0_g1	8	28	19	-23.50	-16.80	0.714893617021277	5	2-14,27-15;16-19,13-10	1-1,28-28[UP5];15-15,14-14[SIL];20-21,9-8[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	AGAAGAAGACAACGAUUAAUG&AAUUAAUCGUUGUUGUUUUAA	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5184_c0_g1_19_TPlot.pdf
TRINITY_DN5187_c1_g1:1802	si_a459	TRINITY_DN5187_c1_g1	1791	1811	1802	-23.20	-15.30	0.65948275862069	9	3-13,1809-1799;15-19,1797-1793	1-2,1811-1810[UP5];14-14,1798-1798[SIL];20-21,1792-1791[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	GGACAUACUGUAUGUGACACC&GUUGUUAUAUAUAAUAUGUAA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN5187_c1_g1_1802_TPlot.pdf
TRINITY_DN5187_c1_g1:875	si_s487	TRINITY_DN5187_c1_g1	864	884	875	-18.40	-12.60	0.684782608695652	6	1-14,884-871;17-20,868-865	15-16,870-869[SIL];21-21,864-864[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AGUUUUAAUUUAAAUGGAUGU&AUAUUUAUUUAAAUAUAAACA	1	0.0527640778112353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN5187_c1_g1_875_TPlot.pdf
TRINITY_DN5187_c2_g1:1734	si_a395	TRINITY_DN5187_c2_g1	1723	1743	1734	-24.70	-16.20	0.65587044534413	7	1-2,1743-1742;4-17,1740-1727	3-3,1741-1741[SIL];18-21,1726-1723[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUGCAACAAUUCUGUAUUGUU&AAGAAUAUAGAAUUGUUUUGU	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN5187_c2_g1_1734_TPlot.pdf
TRINITY_DN5189_c1_g3:717	si_s77	TRINITY_DN5189_c1_g3	705	726	717	-25.50	-16.60	0.650980392156863	6.5	1-13,726-714;14-17,712-709;19-21,707-705	x-x,713-713[BULt];18-18,708-708[SIL]	(((.((((.(((((((((((((&)))))))))))))-)))).)))	GAAAGAAGUGAAAGAGGAAGGA&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5189_c1_g3_717_TPlot.pdf
TRINITY_DN518_c1_g1:2109	si_a71	TRINITY_DN518_c1_g1	2098	2118	2109	-23.30	-15.80	0.678111587982833	9.5	3-8,2116-2111;10-20,2109-2099	1-2,2118-2117[UP5];9-9,2110-2110[SIL];21-21,2098-2098[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	AGGUGGAGGACAUUUUGAGCA&CUUUCAAAUUGUUUUUCAUUA	4	0.999999995586857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN518_c1_g1_2109_TPlot.pdf
TRINITY_DN518_c1_g1:3164	si_s39	TRINITY_DN518_c1_g1	3153	3173	3164	-22.30	-15.60	0.699551569506726	10	4-13,3170-3161;15-20,3159-3154	1-3,3173-3171[UP5];14-14,3160-3160[SIL];21-21,3153-3153[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	CAAUCCAUUUAUUGGGGAAGA&AAAUCUUUAAUAAUUGGAUUU	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN518_c1_g1_3164_TPlot.pdf
TRINITY_DN518_c1_g1:3791	si_a7	TRINITY_DN518_c1_g1	3779	3800	3791	-29.10	-20.90	0.718213058419244	4.5	2-16,3799-3785;17-21,3783-3779	1-1,3800-3800[UP5];x-x,3784-3784[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	AAGUGUGGUUUUCUUUUCAAUG&AAUUGAAGAGAAAGCC-UAUUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN518_c1_g1_3791_TPlot.pdf
TRINITY_DN51916_c0_g1:29	si_a478	TRINITY_DN51916_c0_g1	18	38	29	-21.30	-14.60	0.685446009389671	8	2-12,37-27;15-19,24-20	1-1,38-38[UP5];13-14,26-25[SIL];20-21,19-18[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	CGAUUCUUAGUAGCAGUAAUG&AAUUAUUGUUAUAUAGAAUAU	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN51916_c0_g1_29_TPlot.pdf
TRINITY_DN51916_c0_g1:30	si_a477	TRINITY_DN51916_c0_g1	19	39	30	-21.50	-14.60	0.67906976744186	8.5	3-13,37-27;16-20,24-20	1-2,39-38[UP5];14-15,26-25[SIL];21-21,19-19[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	GAUUCUUAGUAGCAGUAAUGU&UAAUUAUUGUUAUAUAGAAUA	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN51916_c0_g1_30_TPlot.pdf
TRINITY_DN5191_c0_g1:688	si_s96	TRINITY_DN5191_c0_g1	677	697	688	-37.20	-24.30	0.653225806451613	7	1-13,697-685;15-18,683-680	14-14,684-684[SIL];19-21,679-677[UP3]	...((((.(((((((((((((&))))))))))))).))))...	GCAAAUCGGAGGUGGAGAAGA&UCUUCUUCGCUUCGGAUUGGA	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN5191_c0_g1_688_TPlot.pdf
TRINITY_DN5191_c0_g1:690	si_s94	TRINITY_DN5191_c0_g1	679	699	690	-35.50	-25.10	0.707042253521127	5.5	2-15,698-685;17-20,683-680	1-1,699-699[UP5];16-16,684-684[SIL];21-21,679-679[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AAAUCGGAGGUGGAGAAGAAC&CUUCUUCUUCGCUUCGGAUUG	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN5191_c0_g1_690_TPlot.pdf
TRINITY_DN5191_c0_g1:692	si_s92	TRINITY_DN5191_c0_g1	681	702	692	-34.90	-24.50	0.702005730659026	6	2-3,701-700;4-17,698-685;19-21,683-681	1-1,702-702[UP5];x-x,699-699[BULt];18-18,684-684[SIL]	(((.((((((((((((((.((.&.))-)))))))))))))).)))	AUCGGAGGUGGAGAAGAACGAC&UUC-UUCUUCUUCGCUUCGGAU	4	0.999991030208567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5191_c0_g1_692_TPlot.pdf
TRINITY_DN5191_c0_g1:693	si_a499	TRINITY_DN5191_c0_g1	683	702	693	-35.20	-23.30	0.661931818181818	6	1-10,702-693;12-14,692-690;16-19,688-685;21-21,683-683	11-11,x-x[BULq];15-15,689-689[SIL];20-20,684-684[SIL]	(.((((.(((-((((((((((&)))))))))).))).)))).)	CGGAGGUGGA-GAAGAACGAC&GUCGUUUUUCGUCUUCCUUGG	3	0.99999999998526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5191_c0_g1_693_TPlot.pdf
TRINITY_DN5191_c0_g1:695	si_a497	TRINITY_DN5191_c0_g1	685	704	695	-32.00	-23.00	0.71875	5	1-12,704-693;14-16,692-690;18-21,688-685	13-13,x-x[BULq];17-17,689-689[SIL]	((((.(((-((((((((((((&)))))))))))).))).))))	GAGGUGGA-GAAGAACGACGU&AUGUCGUUUUUCGUCUUCCUU	2	0.997863096634582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5191_c0_g1_695_TPlot.pdf
TRINITY_DN5191_c0_g1:696	si_a496	TRINITY_DN5191_c0_g1	683	705	696	-32.40	-21.88	0.675308641975309	8.5	2-13,704-693;16-20,688-684	1-1,705-705[UP5];14-15,692-689[AILt];21-21,683-683[UP3]	.(((((....((((((((((((.&.))))))))))))--..))))).	CGGAGGUGGAGAAGAACGACGUC&UAUGUCGUUUUUC--GUCUUCCU	2	0.999995079587324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5191_c0_g1_696_TPlot.pdf
TRINITY_DN5191_c0_g1:697	si_a495	TRINITY_DN5191_c0_g1	684	706	697	-31.90	-21.58	0.676489028213166	9.5	3-14,704-693;17-21,688-684	1-2,706-705[UP5];15-16,692-689[AILt]	(((((....((((((((((((..&..))))))))))))--..)))))	GGAGGUGGAGAAGAACGACGUCA&AUAUGUCGUUUUUC--GUCUUCC	2	0.999950798213283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5191_c0_g1_697_TPlot.pdf
TRINITY_DN5192_c0_g1:157	si_a552	TRINITY_DN5192_c0_g1	145	166	157	-33.10	-23.20	0.700906344410876	10	4-18,163-149;19-20,147-146	1-3,166-164[UP5];x-x,148-148[BULt];21-21,145-145[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	AGGAGGAGAUGGAGAGAUACAA&AUCUAUUUCUUUAUCUCC-CCG	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN5192_c0_g1_157_TPlot.pdf
TRINITY_DN5192_c0_g1:158	si_a551	TRINITY_DN5192_c0_g1	146	171	158	-31.60	-22.90	0.724683544303797	13.5	2-5,170-167;6-19,162-149;20-21,147-146	1-1,171-171[UP5];x-x,166-163[BULt];x-x,148-148[BULt]	((.((((((((((((((....((((.&.))))----))))))))))))))-))	GGAGGAGAUGGAGAGAUACAAGGAUG&AAUCU----AUUUCUUUAUCUCC-CC	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN5192_c0_g1_158_TPlot.pdf
TRINITY_DN5192_c0_g1:159	si_a550	TRINITY_DN5192_c0_g1	148	172	159	-30.90	-20.10	0.650485436893204	15	3-6,170-167;7-20,162-149	1-2,172-171[UP5];x-x,166-163[BULt];21-21,148-148[UP3]	.((((((((((((((....((((..&..))))----)))))))))))))).	AGGAGAUGGAGAGAUACAAGGAUGA&CAAUCU----AUUUCUUUAUCUCCC	3	0.999859008526984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN5192_c0_g1_159_TPlot.pdf
TRINITY_DN5192_c0_g1:160	si_a549	TRINITY_DN5192_c0_g1	149	172	160	-29.50	-20.80	0.705084745762712	11	1-3,172-170;5-7,168-166;8-21,162-149	4-4,169-169[SIL];x-x,165-163[BULt]	((((((((((((((...(((.(((&))).)))---))))))))))))))	GGAGAUGGAGAGAUACAAGGAUGA&UCAAUCU---AUUUCUUUAUCUCC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN5192_c0_g1_160_TPlot.pdf
TRINITY_DN5192_c0_g1:164	si_a319	TRINITY_DN5192_c0_g1	152	173	164	-22.40	-15.60	0.696428571428572	7.5	1-7,173-167;9-10,165-164;11-21,162-152	8-8,166-166[SIL];x-x,163-163[BULt]	(((((((((((.((.(((((((&))))))).))-)))))))))))	GAUGGAGAGAUACAAGGAUGAA&UUUAUCCAUG-AUUUUUUUAUU	4	0.999999992757229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5192_c0_g1_164_TPlot.pdf
TRINITY_DN5192_c0_g1:2227	si_a311	TRINITY_DN5192_c0_g1	2214	2237	2227	-32.70	-21.80	0.666666666666667	13	1-6,2237-2232;7-11,2230-2226;13-19,2222-2216	x-x,2231-2231[BULt];12-12,2225-2223[AILt];20-21,2215-2214[UP3]	..(((((((...(((((.((((((&))))))-)))))--.)))))))..	ACUCAUGGAACAGGAUCUCGAGCG&CGCUUG-GAUUU--AUCCAUGAUU	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN5192_c0_g1_2227_TPlot.pdf
TRINITY_DN5192_c0_g1:2229	si_a309	TRINITY_DN5192_c0_g1	2216	2239	2229	-33.60	-22.40	0.666666666666667	9	1-8,2239-2232;9-13,2230-2226;15-21,2222-2216	x-x,2231-2231[BULt];14-14,2225-2223[AILt]	(((((((...(((((.((((((((&))))))))-)))))--.)))))))	UCAUGGAACAGGAUCUCGAGCGGG&UUCGCUUG-GAUUU--AUCCAUGA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN5192_c0_g1_2229_TPlot.pdf
TRINITY_DN5192_c0_g1:2243	si_s87	TRINITY_DN5192_c0_g1	2233	2252	2243	-32.90	-22.70	0.689969604863222	6	2-12,2251-2241;14-15,2239-2238;17-21,2237-2233	1-1,2252-2252[UP5];13-13,2240-2240[SIL];16-16,x-x[BULq]	(((((-((.(((((((((((.&.))))))))))).)).)))))	GAGCG-GGCAGAAGAGAGGGC&UUCCUUUCUUCUUCUUCGCUU	3	0.999999999999932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5192_c0_g1_2243_TPlot.pdf
TRINITY_DN5192_c0_g1:2244	si_s86	TRINITY_DN5192_c0_g1	2234	2253	2244	-32.90	-21.50	0.653495440729483	7.5	3-13,2251-2241;15-16,2239-2238;18-21,2237-2234	1-2,2253-2252[UP5];14-14,2240-2240[SIL];17-17,x-x[BULq]	((((-((.(((((((((((..&..))))))))))).)).))))	AGCG-GGCAGAAGAGAGGGCA&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5192_c0_g1_2244_TPlot.pdf
TRINITY_DN5192_c0_g1:2248	si_s82	TRINITY_DN5192_c0_g1	2237	2257	2248	-28.90	-19.00	0.657439446366782	9	3-5,2255-2253;7-17,2251-2241;19-21,2239-2237	1-2,2257-2256[UP5];6-6,2252-2252[SIL];18-18,2240-2240[SIL]	(((.(((((((((((.(((..&..))).))))))))))).)))	GGGCAGAAGAGAGGGCAGAUC&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5192_c0_g1_2248_TPlot.pdf
TRINITY_DN5192_c0_g1:2251	si_s79	TRINITY_DN5192_c0_g1	2240	2260	2251	-26.20	-17.70	0.675572519083969	8.5	1-3,2260-2258;6-8,2255-2253;10-20,2251-2241	4-5,2257-2256[SIL];9-9,2252-2252[SIL];21-21,2240-2240[UP3]	.(((((((((((.(((..(((&)))..))).))))))))))).	CAGAAGAGAGGGCAGAUCAAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5192_c0_g1_2251_TPlot.pdf
TRINITY_DN5192_c0_g1:2253	si_s77	TRINITY_DN5192_c0_g1	2242	2262	2253	-25.50	-17.00	0.666666666666667	9.5	2-5,2261-2258;8-10,2255-2253;12-21,2251-2242	1-1,2262-2262[UP5];6-7,2257-2256[SIL];11-11,2252-2252[SIL]	((((((((((.(((..((((.&.))))..))).))))))))))	GAAGAGAGGGCAGAUCAAAGC&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5192_c0_g1_2253_TPlot.pdf
TRINITY_DN5192_c0_g1:2569	si_a757	TRINITY_DN5192_c0_g1	2557	2579	2569	-33.10	-23.40	0.706948640483384	8.5	1-7,2579-2573;8-11,2571-2568;12-18,2566-2560	x-x,2572-2572[BULt];x-x,2567-2567[BULt];19-21,2559-2557[UP3]	...(((((((.((((.(((((((&)))))))-))))-)))))))...	GUACAGAAACUCCAGAAGGAGGU&ACCUCCU-UUGG-GUUUUUGAUU	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5192_c0_g1_2569_TPlot.pdf
TRINITY_DN5192_c0_g1:2570	si_a756	TRINITY_DN5192_c0_g1	2558	2580	2570	-33.10	-23.60	0.712990936555891	8.5	2-8,2579-2573;9-12,2571-2568;13-19,2566-2560	1-1,2580-2580[UP5];x-x,2572-2572[BULt];x-x,2567-2567[BULt];20-21,2559-2558[UP3]	..(((((((.((((.(((((((.&.)))))))-))))-)))))))..	UACAGAAACUCCAGAAGGAGGUC&AACCUCCU-UUGG-GUUUUUGAU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN5192_c0_g1_2570_TPlot.pdf
TRINITY_DN5192_c0_g1:2571	si_a755	TRINITY_DN5192_c0_g1	2559	2581	2571	-34.90	-23.60	0.67621776504298	8.5	3-9,2579-2573;10-13,2571-2568;14-20,2566-2560	1-2,2581-2580[UP5];x-x,2572-2572[BULt];x-x,2567-2567[BULt];21-21,2559-2559[UP3]	.(((((((.((((.(((((((..&..)))))))-))))-))))))).	ACAGAAACUCCAGAAGGAGGUCG&GAACCUCCU-UUGG-GUUUUUGA	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN5192_c0_g1_2571_TPlot.pdf
TRINITY_DN5192_c0_g1:2652	si_a849	TRINITY_DN5192_c0_g1	2640	2661	2652	-30.70	-21.70	0.706840390879479	8	1-13,2661-2649;15-20,2646-2641	14-14,2648-2647[AILt];21-21,2640-2640[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	UUUGGAUACUCGAGUUGGUGGC&GUUGCUAACUUGA-AAUCCAAU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a849_TRINITY_DN5192_c0_g1_2652_TPlot.pdf
TRINITY_DN5192_c0_g1:42	si_a207	TRINITY_DN5192_c0_g1	31	51	42	-23.90	-16.00	0.669456066945607	11	5-19,47-33	1-4,51-48[UP5];20-21,32-31[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGUUGGUUAGUCGGUUUUUCG&UAAUAAAUCGACUAAUUAAAC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a207_TRINITY_DN5192_c0_g1_42_TPlot.pdf
TRINITY_DN5193_c0_g1:2024	si_s481	TRINITY_DN5193_c0_g1	2013	2033	2024	-23.00	-15.40	0.669565217391304	9.5	3-16,2031-2018	1-2,2033-2032[UP5];17-21,2017-2013[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAAGAAAGUAGAUAUAGGAAG&GAUCCUAUAUUUAUUUAAAUA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN5193_c0_g1_2024_TPlot.pdf
TRINITY_DN5193_c0_g1:2304	si_a66	TRINITY_DN5193_c0_g1	2291	2313	2304	-26.70	-20.26	0.758801498127341	9.5	1-12,2313-2302;16-21,2296-2291	13-15,2301-2297[AILt]	((((((.....((((((((((((&))))))))))))--...))))))	AGAAACCAUGGUUGAGAGGAGCG&CGCUUCUUUCAA--AUUGUUUUU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5193_c0_g1_2304_TPlot.pdf
TRINITY_DN5193_c0_g1:2439	si_a493	TRINITY_DN5193_c0_g1	2428	2451	2439	-29.50	-20.90	0.708474576271186	9	1-6,2451-2446;7-12,2442-2437;14-21,2435-2428	x-x,2445-2443[BULt];13-13,2436-2436[SIL]	((((((((.((((((...((((((&))))))---)))))).))))))))	GAGAUGAAUGACGACGAGAUAUUC&GAAUAU---GUCGUUUUUCGUCUU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN5193_c0_g1_2439_TPlot.pdf
TRINITY_DN5193_c0_g1:2440	si_a492	TRINITY_DN5193_c0_g1	2429	2452	2440	-30.20	-21.10	0.698675496688742	8	1-7,2452-2446;8-13,2442-2437;15-21,2435-2429	x-x,2445-2443[BULt];14-14,2436-2436[SIL]	(((((((.((((((...(((((((&)))))))---)))))).)))))))	AGAUGAAUGACGACGAGAUAUUCU&AGAAUAU---GUCGUUUUUCGUCU	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN5193_c0_g1_2440_TPlot.pdf
TRINITY_DN5194_c0_g1:310	si_a96	TRINITY_DN5194_c0_g1	299	319	310	-27.90	-19.00	0.681003584229391	7	1-17,319-303	18-21,302-299[UP3]	....(((((((((((((((((&)))))))))))))))))....	ACGAAUUUUUGUUGCCUUUUU&GAAAAGGUAACGAAGAUAAAA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a96_TRINITY_DN5194_c0_g1_310_TPlot.pdf
TRINITY_DN5194_c0_g1:3388	si_s436	TRINITY_DN5194_c0_g1	3376	3397	3388	-19.60	-12.90	0.658163265306122	4.5	1-5,3397-3393;7-14,3391-3384;15-20,3382-3377	6-6,3392-3392[SIL];x-x,3383-3383[BULt];21-21,3376-3376[UP3]	.((((((.((((((((.(((((&))))).))))))))-)))))).	GAUAUGUAAAUAUGUAUUUAUU&AAUAAUUACAUAUU-AUAUAUA	4	0.999999073922236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN5194_c0_g1_3388_TPlot.pdf
TRINITY_DN5194_c0_g1:4770	si_s90	TRINITY_DN5194_c0_g1	4756	4779	4770	-35.30	-25.40	0.719546742209632	4	1-13,4779-4767;15-18,4765-4762;19-21,4758-4756	14-14,4766-4766[SIL];x-x,4761-4759[BULt]	(((...((((.(((((((((((((&))))))))))))).))))---)))	CCGUGAAAGCCAAGAAGAAGAAAG&CUUUCUUCUUCUUCGCUU---CGG	2	0.995377114934657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5194_c0_g1_4770_TPlot.pdf
TRINITY_DN5194_c0_g1:4773	si_s87	TRINITY_DN5194_c0_g1	4762	4783	4773	-32.90	-24.00	0.729483282674772	4	1-3,4783-4781;4-16,4779-4767;18-21,4765-4762	x-x,4780-4780[BULt];17-17,4766-4766[SIL]	((((.(((((((((((((.(((&)))-))))))))))))).))))	AAGCCAAGAAGAAGAAAGAGGA&UUC-CUUUCUUCUUCUUCGCUU	2	0.999570955846679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5194_c0_g1_4773_TPlot.pdf
TRINITY_DN5194_c0_g1:4774	si_s86	TRINITY_DN5194_c0_g1	4763	4784	4774	-32.90	-24.00	0.729483282674772	4	1-4,4784-4781;5-17,4779-4767;19-21,4765-4763	x-x,4780-4780[BULt];18-18,4766-4766[SIL]	(((.(((((((((((((.((((&))))-))))))))))))).)))	AGCCAAGAAGAAGAAAGAGGAA&UUUC-CUUUCUUCUUCUUCGCU	2	0.999368946623723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5194_c0_g1_4774_TPlot.pdf
TRINITY_DN5194_c0_g1:4775	si_s85	TRINITY_DN5194_c0_g1	4764	4785	4775	-33.80	-25.60	0.757396449704142	4	1-5,4785-4781;6-18,4779-4767;20-21,4765-4764	x-x,4780-4780[BULt];19-19,4766-4766[SIL]	((.(((((((((((((.(((((&)))))-))))))))))))).))	GCCAAGAAGAAGAAAGAGGAAG&CUUUC-CUUUCUUCUUCUUCGC	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5194_c0_g1_4775_TPlot.pdf
TRINITY_DN5194_c0_g1:4777	si_s83	TRINITY_DN5194_c0_g1	4766	4787	4777	-30.90	-24.30	0.786407766990291	5	2-7,4786-4781;8-20,4779-4767	1-1,4787-4787[UP5];x-x,4780-4780[BULt];21-21,4766-4766[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CAAGAAGAAGAAAGAGGAAGAG&UUCUUUC-CUUUCUUCUUCUUC	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5194_c0_g1_4777_TPlot.pdf
TRINITY_DN5194_c0_g1:4781	si_s80	TRINITY_DN5194_c0_g1	4769	4790	4781	-28.20	-24.80	0.879432624113475	5.5	1-10,4790-4781;11-21,4779-4769	x-x,4780-4780[BULt]	(((((((((((.((((((((((&))))))))))-)))))))))))	GAAGAAGAAAGAGGAAGAGAGG&UUUUUCUUUC-CUUUCUUCUUC	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5194_c0_g1_4781_TPlot.pdf
TRINITY_DN5194_c0_g1:4782	si_s79	TRINITY_DN5194_c0_g1	4770	4791	4782	-26.20	-21.60	0.824427480916031	7	2-11,4790-4781;12-21,4779-4770	1-1,4791-4791[UP5];x-x,4780-4780[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAGAAGAAAGAGGAAGAGAGGU&UUUUUUCUUUC-CUUUCUUCUU	2	0.988813635845706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5194_c0_g1_4782_TPlot.pdf
TRINITY_DN5194_c0_g1:4783	si_s78	TRINITY_DN5194_c0_g1	4771	4792	4783	-26.20	-20.70	0.790076335877863	9	3-12,4790-4781;13-21,4779-4771	1-2,4792-4791[UP5];x-x,4780-4780[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	AGAAGAAAGAGGAAGAGAGGUU&UUUUUUUCUUUC-CUUUCUUCU	2	0.999648425564613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5194_c0_g1_4783_TPlot.pdf
TRINITY_DN5194_c0_g1:4784	si_s67	TRINITY_DN5194_c0_g1	4773	4795	4784	-25.60	-18.00	0.703125	9	1-2,4795-4794;3-9,4792-4786;11-21,4783-4773	x-x,4793-4793[BULt];10-10,4785-4784[AILt]	(((((((((((..(((((((.((&))-)))))))-.)))))))))))	AAGAAAGAGGAAGAGAGGUUAGC&GC-AACUUCU-AUUUUUUUUCUU	4	0.999994064120275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN5194_c0_g1_4784_TPlot.pdf
TRINITY_DN5194_c0_g1:4787	si_s65	TRINITY_DN5194_c0_g1	4775	4797	4787	-26.00	-17.70	0.680769230769231	9	1-4,4797-4794;5-11,4792-4786;13-21,4783-4775	x-x,4793-4793[BULt];12-12,4785-4784[AILt]	(((((((((..(((((((.((((&))))-)))))))-.)))))))))	GAAAGAGGAAGAGAGGUUAGCUG&UAGC-AACUUCU-AUUUUUUUUC	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN5194_c0_g1_4787_TPlot.pdf
TRINITY_DN5194_c0_g1:4788	si_s64	TRINITY_DN5194_c0_g1	4777	4798	4788	-24.10	-17.00	0.705394190871369	6.5	1-5,4798-4794;6-12,4792-4786;14-21,4784-4777	x-x,4793-4793[BULt];13-13,4785-4785[SIL]	((((((((.(((((((.(((((&)))))-))))))).))))))))	AAGAGGAAGAGAGGUUAGCUGA&UUAGC-AACUUCUAUUUUUUUU	2	0.997781799676397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN5194_c0_g1_4788_TPlot.pdf
TRINITY_DN5194_c0_g1:4799	si_s898	TRINITY_DN5194_c0_g1	4784	4808	4799	-30.70	-20.90	0.680781758957655	10.5	1-13,4808-4796;14-18,4791-4787	x-x,4795-4792[BULt];19-21,4786-4784[UP3]	...(((((....(((((((((((((&)))))))))))))----)))))...	AGAGAGGUUAGCUGAGGAGAAGGCU&GGCUUUCUCUUCA----AUUUCAAU	3	0.999991195257928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN5194_c0_g1_4799_TPlot.pdf
TRINITY_DN5194_c0_g1:4800	si_s897	TRINITY_DN5194_c0_g1	4785	4809	4800	-31.30	-21.10	0.674121405750799	11	2-14,4808-4796;15-19,4791-4787	1-1,4809-4809[UP5];x-x,4795-4792[BULt];20-21,4786-4785[UP3]	..(((((....(((((((((((((.&.)))))))))))))----)))))..	GAGAGGUUAGCUGAGGAGAAGGCUC&AGGCUUUCUCUUCA----AUUUCAA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN5194_c0_g1_4800_TPlot.pdf
TRINITY_DN5194_c0_g1:4801	si_s896	TRINITY_DN5194_c0_g1	4786	4811	4801	-31.60	-22.00	0.69620253164557	10	1-3,4811-4809;4-15,4807-4796;16-20,4791-4787	x-x,4808-4808[BULt];x-x,4795-4792[BULt];21-21,4786-4786[UP3]	.(((((....((((((((((((.(((&)))-))))))))))))----))))).	AGAGGUUAGCUGAGGAGAAGGCUCUA&UAG-GCUUUCUCUUCA----AUUUCA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5194_c0_g1_4801_TPlot.pdf
TRINITY_DN5194_c0_g1:4802	si_s895	TRINITY_DN5194_c0_g1	4787	4812	4802	-31.10	-21.50	0.691318327974277	9.5	2-4,4811-4809;5-16,4807-4796;17-21,4791-4787	1-1,4812-4812[UP5];x-x,4808-4808[BULt];x-x,4795-4792[BULt]	(((((....((((((((((((.(((.&.)))-))))))))))))----)))))	GAGGUUAGCUGAGGAGAAGGCUCUAG&AUAG-GCUUUCUCUUCA----AUUUC	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN5194_c0_g1_4802_TPlot.pdf
TRINITY_DN5194_c0_g1:4803	si_s894	TRINITY_DN5194_c0_g1	4792	4813	4803	-29.10	-20.70	0.711340206185567	10.5	3-5,4811-4809;6-17,4807-4796	1-2,4813-4812[UP5];x-x,4808-4808[BULt];18-21,4795-4792[UP3]	....((((((((((((.(((..&..)))-))))))))))))....	UAGCUGAGGAGAAGGCUCUAGC&AAUAG-GCUUUCUCUUCAAUUU	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN5194_c0_g1_4803_TPlot.pdf
TRINITY_DN5194_c0_g1:4807	si_s890	TRINITY_DN5194_c0_g1	4796	4817	4807	-29.50	-20.40	0.691525423728814	14.5	7-9,4811-4809;10-21,4807-4796	1-6,4817-4812[UP5];x-x,4808-4808[BULt]	((((((((((((.(((......&......)))-))))))))))))	UGAGGAGAAGGCUCUAGCCGAG&AAUAAAUAG-GCUUUCUCUUCA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN5194_c0_g1_4807_TPlot.pdf
TRINITY_DN5194_c0_g1:4809	si_s889	TRINITY_DN5194_c0_g1	4797	4818	4809	-28.80	-18.90	0.65625	16	8-10,4811-4809;11-21,4807-4797	1-7,4818-4812[UP5];x-x,4808-4808[BULt]	(((((((((((.(((.......&.......)))-)))))))))))	GAGGAGAAGGCUCUAGCCGAGG&AAAUAAAUAG-GCUUUCUCUUC	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN5194_c0_g1_4809_TPlot.pdf
TRINITY_DN5194_c0_g1:4965	si_a499	TRINITY_DN5194_c0_g1	4954	4975	4965	-35.20	-23.50	0.667613636363636	9	1-6,4975-4970;8-10,4967-4965;12-21,4963-4954	7-7,4969-4968[AILt];11-11,4964-4964[SIL]	((((((((((.(((..((((((&))))))-.))).))))))))))	CUAGGGAAGAAGAAUUAGCGGC&GUCGUU-UUUCGUCUUCCUUGG	3	0.999999999646151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5194_c0_g1_4965_TPlot.pdf
TRINITY_DN5194_c0_g1:5017	si_a58	TRINITY_DN5194_c0_g1	5004	5027	5017	-34.60	-24.20	0.699421965317919	9	1-9,5027-5019;10-12,5017-5015;13-20,5012-5005	x-x,5018-5018[BULt];x-x,5014-5013[BULt];21-21,5004-5004[UP3]	.((((((((..(((.(((((((((&)))))))))-)))--)))))))).	CUUGAAAGACAAGCUGAGUUGGCU&AGUCGACUC-GCU--UCUUUCAAA	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN5194_c0_g1_5017_TPlot.pdf
TRINITY_DN5194_c0_g1:5019	si_a57	TRINITY_DN5194_c0_g1	5005	5028	5019	-36.60	-24.20	0.66120218579235	7	2-10,5027-5019;11-13,5017-5015;14-21,5012-5005	1-1,5028-5028[UP5];x-x,5018-5018[BULt];x-x,5014-5013[BULt]	((((((((..(((.(((((((((.&.)))))))))-)))--))))))))	UUGAAAGACAAGCUGAGUUGGCUA&GAGUCGACUC-GCU--UCUUUCAA	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN5194_c0_g1_5019_TPlot.pdf
TRINITY_DN5194_c0_g1:5110	si_a68	TRINITY_DN5194_c0_g1	5099	5124	5110	-25.40	-16.70	0.65748031496063	16.5	1-9,5124-5116;12-20,5108-5100	10-11,5115-5109[AILt];21-21,5099-5099[UP3]	.(((((((((.......(((((((((&)))))))))-----..))))))))).	AGAAGAACAACGCCAACUGGAAGAAG&CUUCUUUCA-----AAUUGUUUUUCA	4	0.999999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5194_c0_g1_5110_TPlot.pdf
TRINITY_DN5194_c0_g1:5130	si_s84	TRINITY_DN5194_c0_g1	5117	5140	5130	-32.30	-22.30	0.690402476780186	8	1-6,5140-5135;7-10,5133-5130;11-20,5127-5118	x-x,5134-5134[BULt];x-x,5129-5128[BULt];21-21,5117-5117[UP3]	.((((((((((..((((.((((((&))))))-))))--)))))))))).	GGAAGAAGAAGCCAAAGCGGAAGA&UCUUUC-CUUU--CUUCUUCUUCG	4	0.999999999999654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5194_c0_g1_5130_TPlot.pdf
TRINITY_DN5194_c0_g1:5131	si_s83	TRINITY_DN5194_c0_g1	5118	5141	5131	-30.90	-22.60	0.731391585760518	7	1-7,5141-5135;8-11,5133-5130;12-21,5127-5118	x-x,5134-5134[BULt];x-x,5129-5128[BULt]	((((((((((..((((.(((((((&)))))))-))))--))))))))))	GAAGAAGAAGCCAAAGCGGAAGAA&UUCUUUC-CUUU--CUUCUUCUUC	2	0.99998908709614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5194_c0_g1_5131_TPlot.pdf
TRINITY_DN5194_c0_g1:5195	si_s898	TRINITY_DN5194_c0_g1	5184	5204	5195	-30.70	-21.10	0.687296416938111	10	1-12,5204-5193	13-21,5192-5184[UP3]	.........((((((((((((&)))))))))))).........	GCCAAAGAGGAAGAGGAAGCC&GGCUUUCUCUUCAAUUUCAAU	2	0.997009610118473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN5194_c0_g1_5195_TPlot.pdf
TRINITY_DN5194_c0_g1:5196	si_s897	TRINITY_DN5194_c0_g1	5185	5205	5196	-31.30	-21.10	0.674121405750799	10	2-13,5204-5193	1-1,5205-5205[UP5];14-21,5192-5185[UP3]	........((((((((((((.&.))))))))))))........	CCAAAGAGGAAGAGGAAGCCG&AGGCUUUCUCUUCAAUUUCAA	2	0.998528954620462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN5194_c0_g1_5196_TPlot.pdf
TRINITY_DN5194_c0_g1:5197	si_s896	TRINITY_DN5194_c0_g1	5186	5206	5197	-31.60	-21.10	0.667721518987342	11	3-14,5204-5193	1-2,5206-5205[UP5];15-21,5192-5186[UP3]	.......((((((((((((..&..)))))))))))).......	CAAAGAGGAAGAGGAAGCCGA&UAGGCUUUCUCUUCAAUUUCA	2	0.998582868378132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5194_c0_g1_5197_TPlot.pdf
TRINITY_DN5194_c0_g1:5198	si_s895	TRINITY_DN5194_c0_g1	5187	5207	5198	-31.10	-21.10	0.678456591639871	12	4-15,5204-5193	1-3,5207-5205[UP5];16-21,5192-5187[UP3]	......((((((((((((...&...))))))))))))......	AAAGAGGAAGAGGAAGCCGAU&AUAGGCUUUCUCUUCAAUUUC	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN5194_c0_g1_5198_TPlot.pdf
TRINITY_DN5194_c0_g1:5200	si_s893	TRINITY_DN5194_c0_g1	5189	5209	5200	-29.10	-21.10	0.725085910652921	14	6-17,5204-5193	1-5,5209-5205[UP5];18-21,5192-5189[UP3]	....((((((((((((.....&.....))))))))))))....	AGAGGAAGAGGAAGCCGAUCU&AAAUAGGCUUUCUCUUCAAUU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN5194_c0_g1_5200_TPlot.pdf
TRINITY_DN5194_c0_g1:5201	si_s892	TRINITY_DN5194_c0_g1	5190	5210	5201	-29.50	-21.10	0.715254237288136	15	7-18,5204-5193	1-6,5210-5205[UP5];19-21,5192-5190[UP3]	...((((((((((((......&......))))))))))))...	GAGGAAGAGGAAGCCGAUCUC&UAAAUAGGCUUUCUCUUCAAU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN5194_c0_g1_5201_TPlot.pdf
TRINITY_DN5194_c0_g1:5202	si_s891	TRINITY_DN5194_c0_g1	5191	5211	5202	-29.60	-21.10	0.712837837837838	15.5	8-19,5204-5193	1-7,5211-5205[UP5];20-21,5192-5191[UP3]	..((((((((((((.......&.......))))))))))))..	AGGAAGAGGAAGCCGAUCUCG&AUAAAUAGGCUUUCUCUUCAA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN5194_c0_g1_5202_TPlot.pdf
TRINITY_DN5194_c0_g1:5204	si_s889	TRINITY_DN5194_c0_g1	5193	5213	5204	-28.80	-20.70	0.71875	17.5	10-21,5204-5193	1-9,5213-5205[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGGAAGCCGAUCUCGCA&AAAUAAAUAGGCUUUCUCUUC	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN5194_c0_g1_5204_TPlot.pdf
TRINITY_DN5194_c0_g1:5276	si_a66	TRINITY_DN5194_c0_g1	5263	5285	5276	-26.70	-19.46	0.728838951310862	11	1-10,5285-5276;14-20,5270-5264	11-13,5275-5271[AILt];21-21,5263-5263[UP3]	.(((((((.....((((((((((&))))))))))--...))))))).	CGGAACAAGCCAAGAAAGAAGCG&CGCUUCUUUC--AAAUUGUUUUU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5194_c0_g1_5276_TPlot.pdf
TRINITY_DN5194_c0_g1:5277	si_a65	TRINITY_DN5194_c0_g1	5264	5286	5277	-27.70	-19.56	0.706137184115523	10	2-11,5285-5276;15-21,5270-5264	1-1,5286-5286[UP5];12-14,5275-5271[AILt]	(((((((.....((((((((((.&.))))))))))--...)))))))	GGAACAAGCCAAGAAAGAAGCGG&UCGCUUCUUUC--AAAUUGUUUU	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN5194_c0_g1_5277_TPlot.pdf
TRINITY_DN5194_c0_g1:5438	si_s898	TRINITY_DN5194_c0_g1	5427	5447	5438	-30.70	-20.50	0.667752442996743	6.5	1-4,5447-5444;6-12,5442-5436;15-20,5433-5428	5-5,5443-5443[SIL];13-14,5435-5434[SIL];21-21,5427-5427[UP3]	.((((((..(((((((.((((&)))).)))))))..)))))).	CUUGAAGCAGAAGAGGCAGCC&GGCUUUCUCUUCAAUUUCAAU	4	0.999999866969761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN5194_c0_g1_5438_TPlot.pdf
TRINITY_DN5194_c0_g1:5482	si_s67	TRINITY_DN5194_c0_g1	5471	5491	5482	-25.60	-18.10	0.70703125	8	1-2,5491-5490;5-10,5487-5482;12-20,5480-5472	3-4,5489-5488[SIL];11-11,5481-5481[SIL];21-21,5471-5471[UP3]	.(((((((((.((((((..((&))..)))))).))))))))).	CAGAAGAGAACUAGAAGCGGC&GCAACUUCUAUUUUUUUUCUU	2	0.998491877366458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN5194_c0_g1_5482_TPlot.pdf
TRINITY_DN5194_c0_g1:5483	si_s66	TRINITY_DN5194_c0_g1	5472	5492	5483	-26.30	-19.50	0.741444866920152	7	1-3,5492-5490;6-11,5487-5482;13-21,5480-5472	4-5,5489-5488[SIL];12-12,5481-5481[SIL]	(((((((((.((((((..(((&)))..)))))).)))))))))	AGAAGAGAACUAGAAGCGGCU&AGCAACUUCUAUUUUUUUUCU	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN5194_c0_g1_5483_TPlot.pdf
TRINITY_DN5194_c0_g1:5606	si_s83	TRINITY_DN5194_c0_g1	5595	5615	5606	-30.90	-20.20	0.653721682847896	4.5	1-5,5615-5611;7-13,5609-5603;16-21,5600-5595	6-6,5610-5610[SIL];14-15,5602-5601[SIL]	((((((..(((((((.(((((&))))).)))))))..))))))	GAAGAGCUAGAAAGGCAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5194_c0_g1_5606_TPlot.pdf
TRINITY_DN5194_c0_g1:5738	si_s810	TRINITY_DN5194_c0_g1	5727	5748	5738	-27.90	-19.10	0.684587813620072	10.5	1-7,5748-5742;9-17,5739-5731	8-8,5741-5740[AILt];18-21,5730-5727[UP3]	....(((((((((..(((((((&)))))))-.)))))))))....	GUGGAAGAGGAGGAAGACGAAG&CUUCGUU-ACCUUUUCUUAAUA	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN5194_c0_g1_5738_TPlot.pdf
TRINITY_DN5194_c0_g1:5740	si_s808	TRINITY_DN5194_c0_g1	5729	5750	5740	-28.60	-20.70	0.723776223776224	9	2-9,5749-5742;11-19,5739-5731	1-1,5750-5750[UP5];10-10,5741-5740[AILt];20-21,5730-5729[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	GGAAGAGGAGGAAGACGAAGAA&AUCUUCGUU-ACCUUUUCUUAA	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5194_c0_g1_5740_TPlot.pdf
TRINITY_DN5194_c0_g1:5741	si_a503	TRINITY_DN5194_c0_g1	5730	5750	5741	-32.10	-21.70	0.67601246105919	7.5	1-15,5750-5736	16-21,5735-5730[UP3]	......(((((((((((((((&)))))))))))))))......	GAAGAGGAGGAAGACGAAGAA&UUUUUCGUCUUCCUUGGAAUG	2	0.999621165911964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN5194_c0_g1_5741_TPlot.pdf
TRINITY_DN5194_c0_g1:5743	si_s806	TRINITY_DN5194_c0_g1	5731	5752	5743	-28.60	-20.30	0.70979020979021	11	4-11,5749-5742;13-21,5739-5731	1-3,5752-5750[UP5];12-12,5741-5740[AILt]	(((((((((..((((((((...&...))))))))-.)))))))))	AAGAGGAGGAAGACGAAGAAAC&UUAUCUUCGUU-ACCUUUUCUU	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5194_c0_g1_5743_TPlot.pdf
TRINITY_DN5194_c0_g1:5744	si_s805	TRINITY_DN5194_c0_g1	5732	5753	5744	-28.60	-19.40	0.678321678321678	12	5-12,5749-5742;14-21,5739-5732	1-4,5753-5750[UP5];13-13,5741-5740[AILt]	((((((((..((((((((....&....))))))))-.))))))))	AGAGGAGGAAGACGAAGAAACA&UUUAUCUUCGUU-ACCUUUUCU	2	0.999973919801513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN5194_c0_g1_5744_TPlot.pdf
TRINITY_DN5194_c0_g1:5747	si_a497	TRINITY_DN5194_c0_g1	5736	5754	5747	-32.00	-22.10	0.690625	6.5	2-4,5753-5751;7-21,5750-5736	1-1,5754-5754[UP5];5-6,x-x[BULq]	(((((((((((((((--(((.&.)))..)))))))))))))))	GAGGAAGACGAAGAA--ACAA&AUGUCGUUUUUCGUCUUCCUU	3	0.999999998758606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5194_c0_g1_5747_TPlot.pdf
TRINITY_DN5194_c0_g1:5762	si_a501	TRINITY_DN5194_c0_g1	5749	5771	5762	-33.50	-23.20	0.692537313432836	10	1-10,5771-5762;11-18,5759-5752	x-x,5761-5760[BULt];19-21,5751-5749[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	AAACAAGGAAGCAGCGAGAAAUG&CGUUUUUCGU--CUUCCUUGGAA	2	0.999285307816599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5194_c0_g1_5762_TPlot.pdf
TRINITY_DN5194_c0_g1:598	si_s538	TRINITY_DN5194_c0_g1	587	607	598	-28.00	-18.50	0.660714285714286	8	1-11,607-597;13-17,595-591	12-12,596-596[SIL];18-21,590-587[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CGAAUUUGACCGGAUCGAGAA&UUUUUGAUCCGAUCAAAAUAG	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN5194_c0_g1_598_TPlot.pdf
TRINITY_DN5194_c0_g1:600	si_s536	TRINITY_DN5194_c0_g1	589	609	600	-27.70	-18.50	0.667870036101083	8	3-13,607-597;15-19,595-591	1-2,609-608[UP5];14-14,596-596[SIL];20-21,590-589[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	AAUUUGACCGGAUCGAGAACA&CAUUUUUGAUCCGAUCAAAAU	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN5194_c0_g1_600_TPlot.pdf
TRINITY_DN5194_c0_g1:6865	si_s188	TRINITY_DN5194_c0_g1	6854	6874	6865	-28.20	-18.80	0.666666666666667	7.5	2-17,6873-6858	1-1,6874-6874[UP5];18-21,6857-6854[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUACAAAGUAAUUGUUGCUG&GAGUAACGAUUAUUUUGGAAU	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN5194_c0_g1_6865_TPlot.pdf
TRINITY_DN5195_c0_g1:4439	si_s42	TRINITY_DN5195_c0_g1	4428	4448	4439	-24.90	-16.50	0.662650602409639	8.5	3-18,4446-4431	1-2,4448-4447[UP5];19-21,4430-4428[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUUAAGUCCAGUUAUUGAAAA&UCUUUAAUAAUUGGAUUUCAA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN5195_c0_g1_4439_TPlot.pdf
TRINITY_DN5195_c0_g2:2759	si_a638	TRINITY_DN5195_c0_g2	2748	2768	2759	-24.40	-16.20	0.663934426229508	9	1-15,2768-2754	16-21,2753-2748[UP3]	......(((((((((((((((&)))))))))))))))......	CUACGAACUUGAAGAAAUCGA&UCGAUUUUUUUGAGUAAUAUA	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN5195_c0_g2_2759_TPlot.pdf
TRINITY_DN5195_c0_g2:2767	si_a764	TRINITY_DN5195_c0_g2	2756	2776	2767	-28.90	-18.80	0.650519031141869	6	2-4,2775-2773;6-14,2771-2763;17-21,2760-2756	1-1,2776-2776[UP5];5-5,2772-2772[SIL];15-16,2762-2761[SIL]	(((((..(((((((((.(((.&.))).)))))))))..)))))	UUGAAGAAAUCGAAAAGCCAU&UUGGGUUUUUGAUUGAUUCAA	3	0.999999999873981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN5195_c0_g2_2767_TPlot.pdf
TRINITY_DN5195_c0_g2:3352	si_a79	TRINITY_DN5195_c0_g2	3341	3361	3352	-22.20	-14.70	0.662162162162162	6	1-17,3361-3345	18-21,3344-3341[UP3]	....(((((((((((((((((&)))))))))))))))))....	UGGAUUAAUAAUGGAAAAUAA&UUGUUUUUCAUUAUUAAGAAA	3	0.999999981292735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN5195_c0_g2_3352_TPlot.pdf
TRINITY_DN5195_c0_g2:3353	si_a78	TRINITY_DN5195_c0_g2	3342	3362	3353	-22.30	-14.70	0.659192825112108	6	2-18,3361-3345	1-1,3362-3362[UP5];19-21,3344-3342[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GGAUUAAUAAUGGAAAAUAAC&AUUGUUUUUCAUUAUUAAGAA	3	0.999999988256462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN5195_c0_g2_3353_TPlot.pdf
TRINITY_DN5195_c0_g2:3354	si_a77	TRINITY_DN5195_c0_g2	3343	3363	3354	-22.20	-14.70	0.662162162162162	7	3-19,3361-3345	1-2,3363-3362[UP5];20-21,3344-3343[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAUUAAUAAUGGAAAAUAACG&AAUUGUUUUUCAUUAUUAAGA	2	0.999960180951311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN5195_c0_g2_3354_TPlot.pdf
TRINITY_DN5195_c0_g2:3356	si_a75	TRINITY_DN5195_c0_g2	3345	3365	3356	-21.30	-14.50	0.68075117370892	9	5-21,3361-3345	1-4,3365-3362[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUAAUAAUGGAAAAUAACGUA&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999204456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN5195_c0_g2_3356_TPlot.pdf
TRINITY_DN5196_c0_g1:1282	si_s571	TRINITY_DN5196_c0_g1	1271	1292	1282	-29.60	-19.40	0.655405405405405	8.5	2-4,1291-1289;5-17,1287-1275	1-1,1292-1292[UP5];x-x,1288-1288[BULt];18-21,1274-1271[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	AUACUUUUGUUCUUUGUACCCA&CGGG-ACAAGGAAUAAAAAAAU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN5196_c0_g1_1282_TPlot.pdf
TRINITY_DN5196_c0_g1:1545	si_a755	TRINITY_DN5196_c0_g1	1534	1558	1545	-34.90	-23.80	0.681948424068768	15	1-6,1558-1553;7-17,1548-1538	x-x,1552-1549[BULt];18-21,1537-1534[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CUCCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN5196_c0_g1_1545_TPlot.pdf
TRINITY_DN5196_c0_g1:1546	si_a754	TRINITY_DN5196_c0_g1	1535	1559	1546	-34.60	-24.80	0.716763005780347	14	1-7,1559-1553;8-18,1548-1538	x-x,1552-1549[BULt];19-21,1537-1535[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UCCGGACCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN5196_c0_g1_1546_TPlot.pdf
TRINITY_DN51971_c0_g1:315	si_s85	TRINITY_DN51971_c0_g1	304	325	315	-33.80	-25.10	0.742603550295858	7.5	2-9,324-317;10-20,315-305	1-1,325-325[UP5];x-x,316-316[BULt];21-21,304-304[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	ACGAAGAGGAAGUAGAGGGAGA&CUUUCCUUU-CUUCUUCUUCGC	2	0.99127866280964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN51971_c0_g1_315_TPlot.pdf
TRINITY_DN5198_c2_g1:1360	si_a325	TRINITY_DN5198_c2_g1	1350	1369	1360	-25.90	-18.50	0.714285714285714	7	1-11,1369-1359;14-20,1357-1351	12-13,1358-1358[AILq];21-21,1350-1350[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	UCAGGGAGC-AGAAAGUCAUG&CAUGAUUUUUUUAUUCCUUGU	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN5198_c2_g1_1360_TPlot.pdf
TRINITY_DN5198_c4_g1:1247	si_a632	TRINITY_DN5198_c4_g1	1237	1256	1247	-26.10	-19.10	0.731800766283525	7	3-16,1254-1241;18-20,1240-1238	1-2,1256-1255[UP5];17-17,x-x[BULq];21-21,1237-1237[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	CCUC-AAAAAGUCGACGUAUG&AUUAUGUCGAUUUUUUUGAGU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN5198_c4_g1_1247_TPlot.pdf
TRINITY_DN5198_c4_g1:346	si_s72	TRINITY_DN5198_c4_g1	335	355	346	-24.10	-16.00	0.663900414937759	10	4-9,352-347;12-21,344-335	1-3,355-353[UP5];10-11,346-345[SIL]	((((((((((..((((((...&...))))))..))))))))))	AAGGAAAGAAUUGAAAUACUC&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5198_c4_g1_346_TPlot.pdf
TRINITY_DN51995_c0_g1:284	si_a787	TRINITY_DN51995_c0_g1	270	294	284	-26.30	-18.70	0.711026615969582	7.5	1-4,294-291;5-16,289-278;17-21,274-270	x-x,290-290[BULt];x-x,277-275[BULt]	(((((...((((((((((((.((((&))))-))))))))))))---)))))	UGGAGUACAGUGGAAGAAUAUGAAG&CUUC-UAUUUUUCUAUU---UUCCA	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN51995_c0_g1_284_TPlot.pdf
TRINITY_DN519_c1_g3:185	si_a495	TRINITY_DN519_c1_g3	176	194	185	-31.90	-22.80	0.714733542319749	6	1-14,194-181;17-21,180-176	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	GGAAG--GAGGAGCGGCAUAU&AUAUGUCGUUUUUCGUCUUCC	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN519_c1_g3_185_TPlot.pdf
TRINITY_DN519_c1_g3:4694	si_a153	TRINITY_DN519_c1_g3	4683	4703	4694	-28.70	-21.40	0.745644599303136	7	1-5,4703-4699;7-15,4697-4689;17-19,4687-4685	6-6,4698-4698[SIL];16-16,4688-4688[SIL];20-21,4684-4683[UP3]	..(((.(((((((((.(((((&))))).))))))))).)))..	UAAGAAUGACCUUAAUGCGAC&GUUGUUUUAAGGUCAAUCUAU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN519_c1_g3_4694_TPlot.pdf
TRINITY_DN519_c1_g3:497	si_a67	TRINITY_DN519_c1_g3	486	511	497	-27.20	-19.30	0.709558823529412	13	1-6,511-506;7-10,500-497;12-21,495-486	x-x,505-501[BULt];11-11,496-496[SIL]	((((((((((.((((.....((((((&))))))-----)))).))))))))))	GGAAAGCAAUCUGAAGUUCUAGAAGC&GCUUCU-----UUCAAAUUGUUUUUC	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN519_c1_g3_497_TPlot.pdf
TRINITY_DN519_c1_g3:773	si_a633	TRINITY_DN519_c1_g3	762	783	773	-26.40	-17.90	0.678030303030303	8.5	2-6,782-778;7-19,776-764	1-1,783-783[UP5];x-x,777-777[BULt];20-21,763-762[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	GCCUCAGAAAGGUUGAACAUAC&UUAUGU-CGAUUUUUUUGAGUA	4	0.999999747732611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN519_c1_g3_773_TPlot.pdf
TRINITY_DN519_c1_g4:134	si_s362	TRINITY_DN519_c1_g4	123	142	134	-34.70	-22.60	0.651296829971182	6.5	2-5,141-138;7-17,137-127;19-21,125-123	1-1,142-142[UP5];6-6,x-x[BULq];18-18,126-126[SIL]	(((.(((((((((((-((((.&.)))).))))))))))).)))	GAGGGAUUGGUUUAA-CUGUA&AAUAGAUUGAACCGAUCGCUC	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN519_c1_g4_134_TPlot.pdf
TRINITY_DN51_c0_g1:1549	si_s78	TRINITY_DN51_c0_g1	1538	1558	1549	-26.20	-19.70	0.751908396946565	7	3-17,1556-1542;19-20,1540-1539	1-2,1558-1557[UP5];18-18,1541-1541[SIL];21-21,1538-1538[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	UGAUGAGGGGGAAGAAAAAUA&UUUUUUUCUUUCCUUUCUUCU	4	0.999999999985496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN51_c0_g1_1549_TPlot.pdf
TRINITY_DN51_c0_g1:1553	si_s74	TRINITY_DN51_c0_g1	1542	1563	1553	-25.00	-19.90	0.796	8.5	1-4,1563-1560;7-21,1556-1542	5-6,1559-1557[AILt]	(((((((((((((((...((((&))))-..)))))))))))))))	GAGGGGGAAGAAAAAUAUGUAG&CUAU-UUUUUUUCUUUCCUUUC	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN51_c0_g1_1553_TPlot.pdf
TRINITY_DN51_c0_g1:1554	si_s73	TRINITY_DN51_c0_g1	1543	1564	1554	-24.00	-18.30	0.7625	8.5	1-5,1564-1560;8-21,1556-1543	6-7,1559-1557[AILt]	((((((((((((((...(((((&)))))-..))))))))))))))	AGGGGGAAGAAAAAUAUGUAGA&UCUAU-UUUUUUUCUUUCCUUU	2	0.999911685974573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN51_c0_g1_1554_TPlot.pdf
TRINITY_DN51_c0_g1:1555	si_s72	TRINITY_DN51_c0_g1	1544	1565	1555	-24.10	-17.70	0.734439834024896	9.5	2-6,1564-1560;9-21,1556-1544	1-1,1565-1565[UP5];7-8,1559-1557[AILt]	(((((((((((((...(((((.&.)))))-..)))))))))))))	GGGGGAAGAAAAAUAUGUAGAU&UUCUAU-UUUUUUUCUUUCCUU	2	0.999999435738506	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN51_c0_g1_1555_TPlot.pdf
TRINITY_DN51_c0_g1:1556	si_s71	TRINITY_DN51_c0_g1	1545	1566	1556	-25.70	-17.40	0.67704280155642	11	3-7,1564-1560;10-21,1556-1545	1-2,1566-1565[UP5];8-9,1559-1557[AILt]	((((((((((((...(((((..&..)))))-..))))))))))))	GGGGAAGAAAAAUAUGUAGAUA&CUUCUAU-UUUUUUUCUUUCCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN51_c0_g1_1556_TPlot.pdf
TRINITY_DN51_c0_g1:2237	si_a147	TRINITY_DN51_c0_g1	2228	2246	2237	-30.40	-20.50	0.674342105263158	7	1-14,2246-2233;17-20,2232-2229	15-16,x-x[BULq];21-21,2228-2228[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	AGACC--AAGAUGACAGCGAU&AUCGUUGUUGUUUUAAGGUCA	3	0.999971513383237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN51_c0_g1_2237_TPlot.pdf
TRINITY_DN51_c0_g1:2238	si_a146	TRINITY_DN51_c0_g1	2229	2247	2238	-29.70	-20.90	0.703703703703704	5.5	1-15,2247-2233;18-21,2232-2229	16-17,x-x[BULq]	((((--(((((((((((((((&)))))))))))))))..))))	GACC--AAGAUGACAGCGAUU&AAUCGUUGUUGUUUUAAGGUC	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN51_c0_g1_2238_TPlot.pdf
TRINITY_DN51_c0_g1:2242	si_a142	TRINITY_DN51_c0_g1	2231	2251	2242	-23.50	-15.60	0.663829787234043	11.5	5-19,2247-2233	1-4,2251-2248[UP5];20-21,2232-2231[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAAGAUGACAGCGAUUUAGA&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN51_c0_g1_2242_TPlot.pdf
TRINITY_DN51_c0_g1:2314	si_a142	TRINITY_DN51_c0_g1	2303	2323	2314	-23.50	-17.70	0.753191489361702	13	6-19,2318-2305	1-5,2323-2319[UP5];20-21,2304-2303[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAGAACGACGACGAUGAAGA&AAUUAAUCGUUGUUGUUUUAA	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN51_c0_g1_2314_TPlot.pdf
TRINITY_DN5200_c0_g1:1295	si_a636	TRINITY_DN5200_c0_g1	1282	1304	1295	-26.30	-17.50	0.665399239543726	11.5	2-13,1303-1292;14-18,1289-1285	1-1,1304-1304[UP5];x-x,1291-1290[BULt];19-21,1284-1282[UP3]	...(((((..((((((((((((.&.))))))))))))--)))))...	GAGUGCUCUAAGAGGAGUCGGCG&UGUCGAUUUUUUU--GAGUAAUA	3	0.999999989808071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN5200_c0_g1_1295_TPlot.pdf
TRINITY_DN5200_c0_g1:1296	si_a635	TRINITY_DN5200_c0_g1	1283	1305	1296	-26.10	-17.50	0.670498084291188	12	3-14,1303-1292;15-19,1289-1285	1-2,1305-1304[UP5];x-x,1291-1290[BULt];20-21,1284-1283[UP3]	..(((((..((((((((((((..&..))))))))))))--)))))..	AGUGCUCUAAGAGGAGUCGGCGC&AUGUCGAUUUUUUU--GAGUAAU	4	0.999999999170924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN5200_c0_g1_1296_TPlot.pdf
TRINITY_DN5200_c0_g1:1298	si_a633	TRINITY_DN5200_c0_g1	1285	1307	1298	-26.40	-17.30	0.65530303030303	13.5	5-16,1303-1292;17-21,1289-1285	1-4,1307-1304[UP5];x-x,1291-1290[BULt]	(((((..((((((((((((....&....))))))))))))--)))))	UGCUCUAAGAGGAGUCGGCGCUG&UUAUGUCGAUUUUUUU--GAGUA	4	0.99999999999716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5200_c0_g1_1298_TPlot.pdf
TRINITY_DN5200_c0_g1:1903	si_a674	TRINITY_DN5200_c0_g1	1892	1912	1903	-34.70	-24.50	0.706051873198847	7	2-14,1911-1899;16-18,1897-1895	1-1,1912-1912[UP5];15-15,1898-1898[SIL];19-21,1894-1892[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	GAACGCCUGAGUAAGGAGUCG&UGAUUCCUUAUUCACGCGGUU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN5200_c0_g1_1903_TPlot.pdf
TRINITY_DN5200_c0_g1:2399	si_a449	TRINITY_DN5200_c0_g1	2388	2408	2399	-25.70	-17.20	0.669260700389105	7.5	1-5,2408-2404;7-16,2402-2393	6-6,2403-2403[SIL];17-21,2392-2388[UP3]	.....((((((((((.(((((&))))).)))))))))).....	CCGAGAGCAACAAUUCUCUCA&UGAGAUAAUUGUUGUUAUAUA	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN5200_c0_g1_2399_TPlot.pdf
TRINITY_DN5200_c0_g1:2400	si_a448	TRINITY_DN5200_c0_g1	2389	2409	2400	-25.50	-17.20	0.674509803921569	7.5	2-6,2408-2404;8-17,2402-2393	1-1,2409-2409[UP5];7-7,2403-2403[SIL];18-21,2392-2389[UP3]	....((((((((((.(((((.&.))))).))))))))))....	CGAGAGCAACAAUUCUCUCAG&AUGAGAUAAUUGUUGUUAUAU	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN5200_c0_g1_2400_TPlot.pdf
TRINITY_DN5200_c0_g1:2401	si_a447	TRINITY_DN5200_c0_g1	2390	2410	2401	-25.70	-17.20	0.669260700389105	8.5	3-7,2408-2404;9-18,2402-2393	1-2,2410-2409[UP5];8-8,2403-2403[SIL];19-21,2392-2390[UP3]	...((((((((((.(((((..&..))))).))))))))))...	GAGAGCAACAAUUCUCUCAGC&UAUGAGAUAAUUGUUGUUAUA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN5200_c0_g1_2401_TPlot.pdf
TRINITY_DN5200_c0_g1:2402	si_a446	TRINITY_DN5200_c0_g1	2391	2411	2402	-25.50	-17.20	0.674509803921569	9.5	4-8,2408-2404;10-19,2402-2393	1-3,2411-2409[UP5];9-9,2403-2403[SIL];20-21,2392-2391[UP3]	..((((((((((.(((((...&...))))).))))))))))..	AGAGCAACAAUUCUCUCAGCG&AUAUGAGAUAAUUGUUGUUAU	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN5200_c0_g1_2402_TPlot.pdf
TRINITY_DN5201_c0_g2:1683	si_s317	TRINITY_DN5201_c0_g2	1671	1692	1683	-33.10	-22.70	0.685800604229607	8	1-11,1692-1682;12-17,1680-1675	x-x,1681-1681[BULt];18-21,1674-1671[UP3]	....((((((.(((((((((((&)))))))))))-))))))....	AGAGGUGAUAGAGAAGGACGGA&UCUGUCCUUCU-UGUUACAAAC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN5201_c0_g2_1683_TPlot.pdf
TRINITY_DN5201_c0_g2:1692	si_a69	TRINITY_DN5201_c0_g2	1681	1701	1692	-24.00	-17.80	0.741666666666667	8.5	1-9,1701-1693;11-19,1691-1683	10-10,1692-1692[SIL];20-21,1682-1681[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GAGAAGGACGGAUUGAGAGAG&UUCUUUCAAAUUGUUUUUCAU	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5201_c0_g2_1692_TPlot.pdf
TRINITY_DN5201_c0_g3:395	si_a642	TRINITY_DN5201_c0_g3	383	405	395	-25.90	-17.20	0.664092664092664	5	1-9,405-397;10-18,395-387;19-20,385-384	x-x,396-396[BULt];x-x,386-386[BULt];21-21,383-383[UP3]	.((.(((((((((.(((((((((&)))))))))-)))))))))-)).	ACGAAUAUAUUACGUCAAAAAGA&UUUUUUUGA-GUAAUAUAU-CGG	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5201_c0_g3_395_TPlot.pdf
TRINITY_DN5203_c0_g1:4254	si_a895	TRINITY_DN5203_c0_g1	4243	4263	4254	-21.70	-20.90	0.963133640552995	3	1-19,4263-4245	20-21,4244-4243[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUAUUACUUAUUAUUACUGU&AUAGUAAUAAUAAGUAAUAUA	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN5203_c0_g1_4254_TPlot.pdf
TRINITY_DN5203_c0_g1:4256	si_a893	TRINITY_DN5203_c0_g1	4245	4265	4256	-21.70	-22.90	1	2	1-21,4265-4245	NA	(((((((((((((((((((((&)))))))))))))))))))))	UAUUACUUAUUAUUACUGUGU&AUAUAGUAAUAAUAAGUAAUA	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN5203_c0_g1_4256_TPlot.pdf
TRINITY_DN5203_c0_g1:4342	si_a899	TRINITY_DN5203_c0_g1	4331	4351	4342	-18.70	-13.70	0.732620320855615	7	4-20,4348-4332	1-3,4351-4349[UP5];21-21,4331-4331[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AUUUUAUAUUAUUUAUUAAAA&UAAUAAUAAGUAAUAUAAAAA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN5203_c0_g1_4342_TPlot.pdf
TRINITY_DN5203_c0_g1:4343	si_a898	TRINITY_DN5203_c0_g1	4332	4352	4343	-20.50	-13.50	0.658536585365854	8	5-21,4348-4332	1-4,4352-4349[UP5]	(((((((((((((((((....&....)))))))))))))))))	UUUUAUAUUAUUUAUUAAAAA&GUAAUAAUAAGUAAUAUAAAA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN5203_c0_g1_4343_TPlot.pdf
TRINITY_DN5203_c0_g1:5018	si_a26	TRINITY_DN5203_c0_g1	5003	5027	5018	-28.00	-18.20	0.65	10	3-9,5025-5019;11-15,5017-5013;16-21,5008-5003	1-2,5027-5026[UP5];10-10,5018-5018[SIL];x-x,5012-5009[BULt]	((((((....(((((.(((((((..&..))))))).)))))----))))))	CGGUCUAUUUUAGAAGUAAAAGUCA&UUAUUUUUAGUUCUA----AGACCG	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN5203_c0_g1_5018_TPlot.pdf
TRINITY_DN5203_c0_g1:5139	si_s779	TRINITY_DN5203_c0_g1	5128	5148	5139	-29.30	-19.30	0.658703071672355	5	1-12,5148-5137;14-19,5135-5130	13-13,5136-5136[SIL];20-21,5129-5128[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	CUCUUGUUAUAUAGUAAUGGU&ACUAUUGCUAUAAAACAAGCU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s779_TRINITY_DN5203_c0_g1_5139_TPlot.pdf
TRINITY_DN5203_c0_g1:5140	si_s778	TRINITY_DN5203_c0_g1	5129	5149	5140	-29.00	-19.30	0.66551724137931	5	2-13,5148-5137;15-20,5135-5130	1-1,5149-5149[UP5];14-14,5136-5136[SIL];21-21,5129-5129[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	UCUUGUUAUAUAGUAAUGGUU&UACUAUUGCUAUAAAACAAGC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s778_TRINITY_DN5203_c0_g1_5140_TPlot.pdf
TRINITY_DN5203_c0_g1:548	si_a407	TRINITY_DN5203_c0_g1	537	557	548	-19.80	-13.10	0.661616161616162	8	1-13,557-545	14-21,544-537[UP3]	........(((((((((((((&)))))))))))))........	GAACAAAAAUAAACAAAACAA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5203_c0_g1_548_TPlot.pdf
TRINITY_DN52046_c0_g1:130	si_s480	TRINITY_DN52046_c0_g1	119	139	130	-25.00	-16.80	0.672	7	2-14,138-126;17-20,123-120	1-1,139-139[UP5];15-16,125-124[SIL];21-21,119-119[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	UUUUGCUUGAAUAUGGGGUCA&GGAUCCUAUAUUUAUUUAAAU	1	0.0689616420279588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN52046_c0_g1_130_TPlot.pdf
TRINITY_DN5205_c0_g1:2265	si_s256	TRINITY_DN5205_c0_g1	2252	2274	2265	-29.30	-19.40	0.662116040955631	11	1-7,2274-2268;9-12,2266-2263;13-18,2260-2255	8-8,2267-2267[SIL];x-x,2262-2261[BULt];19-21,2254-2252[UP3]	...((((((..((((.(((((((&))))))).))))--))))))...	ACAUUGAGUUGGAUAGGUCGGGA&UCCCGAUAUAUU--ACUCAAAAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s256_TRINITY_DN5205_c0_g1_2265_TPlot.pdf
TRINITY_DN5205_c0_g1:2268	si_s253	TRINITY_DN5205_c0_g1	2255	2277	2268	-29.50	-21.00	0.711864406779661	6.5	2-10,2276-2268;12-15,2266-2263;16-21,2260-2255	1-1,2277-2277[UP5];11-11,2267-2267[SIL];x-x,2262-2261[BULt]	((((((..((((.(((((((((.&.))))))))).))))--))))))	UUGAGUUGGAUAGGUCGGGAAAA&AUUUCCCGAUAUAUU--ACUCAA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN5205_c0_g1_2268_TPlot.pdf
TRINITY_DN5205_c0_g1:2550	si_s630	TRINITY_DN5205_c0_g1	2540	2559	2550	-35.60	-26.60	0.747191011235955	6.5	1-10,2559-2550;12-21,2549-2540	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	GCGAACGUCU-CGAAGGGGUU&GAUCUUUUCGUAGGCGUUUGC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN5205_c0_g1_2550_TPlot.pdf
TRINITY_DN5205_c0_g1:2551	si_s629	TRINITY_DN5205_c0_g1	2541	2560	2551	-34.60	-23.30	0.673410404624277	8	2-11,2559-2550;13-21,2549-2541	1-1,2560-2560[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	CGAACGUCU-CGAAGGGGUUA&CGAUCUUUUCGUAGGCGUUUG	2	0.97754125916965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN5205_c0_g1_2551_TPlot.pdf
TRINITY_DN5206_c0_g1:7154	si_s292	TRINITY_DN5206_c0_g1	7139	7164	7154	-36.60	-24.50	0.669398907103825	10.5	1-4,7164-7161;5-17,7159-7147;18-20,7142-7140	x-x,7160-7160[BULt];x-x,7146-7143[BULt];21-21,7139-7139[UP3]	.(((....(((((((((((((.((((&))))-)))))))))))))----))).	CCGCCUUUGAUUCUGAUCGACGUGGG&CCUA-GUCGAUUGGAAUU----GCGA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN5206_c0_g1_7154_TPlot.pdf
TRINITY_DN5206_c0_g1:7300	si_s38	TRINITY_DN5206_c0_g1	7289	7309	7300	-22.70	-15.50	0.682819383259912	15	7-21,7303-7289	1-6,7309-7304[UP5]	(((((((((((((((......&......)))))))))))))))	GAUCCGAUUGUUGAGACGUUC&UAAAUCUUUAAUAAUUGGAUU	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN5206_c0_g1_7300_TPlot.pdf
TRINITY_DN5206_c0_g1:7516	si_s89	TRINITY_DN5206_c0_g1	7504	7525	7516	-35.30	-25.40	0.719546742209632	8	2-14,7524-7512;15-21,7510-7504	1-1,7525-7525[UP5];x-x,7511-7511[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	CGGGGCGUGGGGAGAGGGGAGU&CCUUUCUUCUUCUU-CGCUUCG	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5206_c0_g1_7516_TPlot.pdf
TRINITY_DN5206_c0_g1:7523	si_s72	TRINITY_DN5206_c0_g1	7512	7531	7523	-24.10	-17.50	0.726141078838174	11	1-6,7531-7526;9-21,7524-7512	7-8,7525-7525[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GGGGAGAGGGGAGU-GUGGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999999106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5206_c0_g1_7523_TPlot.pdf
TRINITY_DN5206_c0_g1:7529	si_s507	TRINITY_DN5206_c0_g1	7518	7539	7529	-22.70	-16.20	0.713656387665198	10	3-6,7537-7534;7-19,7532-7520	1-2,7539-7538[UP5];x-x,7533-7533[BULt];20-21,7519-7518[UP3]	..(((((((((((((.((((..&..))))-)))))))))))))..	AGGGGAGUGUGGAAUCUGUUAU&AAAACA-AUUCUAUAUUCUUAA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN5206_c0_g1_7529_TPlot.pdf
TRINITY_DN5206_c0_g1:7530	si_s506	TRINITY_DN5206_c0_g1	7519	7540	7530	-24.30	-16.20	0.666666666666667	11	4-7,7537-7534;8-20,7532-7520	1-3,7540-7538[UP5];x-x,7533-7533[BULt];21-21,7519-7519[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	GGGGAGUGUGGAAUCUGUUAUA&CAAAACA-AUUCUAUAUUCUUA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN5206_c0_g1_7530_TPlot.pdf
TRINITY_DN5206_c0_g1:7865	si_a123	TRINITY_DN5206_c0_g1	7853	7874	7865	-26.60	-18.80	0.706766917293233	8	1-6,7874-7869;8-11,7867-7864;12-19,7862-7855	7-7,7868-7868[SIL];x-x,7863-7863[BULt];20-21,7854-7853[UP3]	..((((((((.((((.((((((&)))))).))))-))))))))..	CGACUAUUGCGUGUACGACAAG&CUUGUUUUAUA-GCAAUAGUAA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN5206_c0_g1_7865_TPlot.pdf
TRINITY_DN5206_c0_g1:7866	si_a122	TRINITY_DN5206_c0_g1	7854	7875	7866	-29.00	-22.50	0.775862068965517	7	1-7,7875-7869;9-12,7867-7864;13-20,7862-7855	8-8,7868-7868[SIL];x-x,7863-7863[BULt];21-21,7854-7854[UP3]	.((((((((.((((.(((((((&))))))).))))-)))))))).	GACUAUUGCGUGUACGACAAGC&GCUUGUUUUAUA-GCAAUAGUA	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN5206_c0_g1_7866_TPlot.pdf
TRINITY_DN5206_c0_g1:7867	si_a121	TRINITY_DN5206_c0_g1	7855	7876	7867	-29.30	-22.30	0.761092150170648	6	2-8,7875-7869;10-13,7867-7864;14-21,7862-7855	1-1,7876-7876[UP5];9-9,7868-7868[SIL];x-x,7863-7863[BULt]	((((((((.((((.(((((((.&.))))))).))))-))))))))	ACUAUUGCGUGUACGACAAGCC&AGCUUGUUUUAUA-GCAAUAGU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN5206_c0_g1_7867_TPlot.pdf
TRINITY_DN5206_c0_g1:7868	si_a120	TRINITY_DN5206_c0_g1	7856	7877	7868	-30.50	-21.00	0.688524590163934	7.5	3-9,7875-7869;11-14,7867-7864;15-21,7862-7856	1-2,7877-7876[UP5];10-10,7868-7868[SIL];x-x,7863-7863[BULt]	(((((((.((((.(((((((..&..))))))).))))-)))))))	CUAUUGCGUGUACGACAAGCCG&GAGCUUGUUUUAUA-GCAAUAG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN5206_c0_g1_7868_TPlot.pdf
TRINITY_DN5206_c0_g1:7869	si_a119	TRINITY_DN5206_c0_g1	7857	7877	7869	-30.30	-20.30	0.66996699669967	6.5	1-2,7877-7876;4-10,7875-7869;12-15,7867-7864;16-21,7862-7857	3-3,x-x[BULq];11-11,7868-7868[SIL];x-x,7863-7863[BULt]	((((((.((((.(((((((-((&)).))))))).))))-))))))	UAUUGCGUGUACGACAAGC-CG&CGAGCUUGUUUUAUA-GCAAUA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN5206_c0_g1_7869_TPlot.pdf
TRINITY_DN5208_c0_g1:470	si_a401	TRINITY_DN5208_c0_g1	459	479	470	-22.60	-15.40	0.68141592920354	8	1-16,479-464	17-21,463-459[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAGUAAUGAAGCAGUUCUAU&AUAGAAUUGUUUUGUUUAUAU	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN5208_c0_g1_470_TPlot.pdf
TRINITY_DN5209_c0_g1:1410	si_a775	TRINITY_DN5209_c0_g1	1399	1419	1410	-27.20	-18.00	0.661764705882353	9	2-10,1418-1410;13-19,1407-1401	1-1,1419-1419[UP5];11-12,1409-1408[SIL];20-21,1400-1399[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	CUGUGGAAGUUUUGAGUCAAA&AUUGAUUCAACUCUUCUAUUU	3	0.999864602933966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN5209_c0_g1_1410_TPlot.pdf
TRINITY_DN520_c0_g1:1267	si_s496	TRINITY_DN520_c0_g1	1256	1276	1267	-21.70	-14.30	0.658986175115207	4	1-11,1276-1266;13-16,1264-1261;19-21,1258-1256	12-12,1265-1265[SIL];17-18,1260-1259[SIL]	(((..((((.(((((((((((&))))))))))).))))..)))	GAACGGUUUAGUUUAUAUUUA&UAAAUAUAAACAAAACAAUUC	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN520_c0_g1_1267_TPlot.pdf
TRINITY_DN520_c0_g1:1344	si_s550	TRINITY_DN520_c0_g1	1333	1354	1344	-20.30	-14.10	0.694581280788177	7.5	1-6,1354-1349;7-17,1347-1337	x-x,1348-1348[BULt];18-21,1336-1333[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UUAUUGUUAAUUCUGUUUUUGA&UCAAAA-UAGAAUUAAUAUUUU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN520_c0_g1_1344_TPlot.pdf
TRINITY_DN520_c0_g1:1345	si_s549	TRINITY_DN520_c0_g1	1334	1355	1345	-20.50	-15.10	0.736585365853659	6.5	1-7,1355-1349;8-18,1347-1337	x-x,1348-1348[BULt];19-21,1336-1334[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	UAUUGUUAAUUCUGUUUUUGAU&AUCAAAA-UAGAAUUAAUAUUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN520_c0_g1_1345_TPlot.pdf
TRINITY_DN520_c0_g1:1346	si_s548	TRINITY_DN520_c0_g1	1335	1356	1346	-22.50	-16.70	0.742222222222222	6	1-8,1356-1349;9-19,1347-1337	x-x,1348-1348[BULt];20-21,1336-1335[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	AUUGUUAAUUCUGUUUUUGAUU&GAUCAAAA-UAGAAUUAAUAUU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN520_c0_g1_1346_TPlot.pdf
TRINITY_DN520_c0_g1:1347	si_s547	TRINITY_DN520_c0_g1	1336	1357	1347	-24.00	-16.70	0.695833333333333	6.5	2-9,1356-1349;10-20,1347-1337	1-1,1357-1357[UP5];x-x,1348-1348[BULt];21-21,1336-1336[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	UUGUUAAUUCUGUUUUUGAUUA&CGAUCAAAA-UAGAAUUAAUAU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s547_TRINITY_DN520_c0_g1_1347_TPlot.pdf
TRINITY_DN520_c0_g1:302	si_a67	TRINITY_DN520_c0_g1	292	311	302	-27.20	-18.10	0.665441176470588	5.5	2-11,310-301;13-20,300-293	1-1,311-311[UP5];12-12,x-x[BULq];21-21,292-292[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	UAAAAGCAA-UUGAGAGAAGA&GCUUCUUUCAAAUUGUUUUUC	4	0.999999999980232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN520_c0_g1_302_TPlot.pdf
TRINITY_DN520_c0_g1:3683	si_a273	TRINITY_DN520_c0_g1	3672	3692	3683	-36.10	-23.50	0.650969529085873	9	4-20,3689-3673	1-3,3692-3690[UP5];21-21,3672-3672[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGUGAUUUUUUUGUAGGUAUG&AACGCCUACGAAAAGAUCGCU	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a273_TRINITY_DN520_c0_g1_3683_TPlot.pdf
TRINITY_DN520_c0_g1:3829	si_a464	TRINITY_DN520_c0_g1	3818	3838	3829	-19.60	-13.20	0.673469387755102	5.5	2-17,3837-3822	1-1,3838-3838[UP5];18-21,3821-3818[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUUUAUUAUAUAUUAUAUAUU&UAUAUAUAAUAUGUAAUUAUU	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN520_c0_g1_3829_TPlot.pdf
TRINITY_DN520_c0_g1:3830	si_a463	TRINITY_DN520_c0_g1	3819	3839	3830	-19.70	-13.20	0.67005076142132	6.5	3-18,3837-3822	1-2,3839-3838[UP5];19-21,3821-3819[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUAUUAUAUAUUAUAUAUUU&UUAUAUAUAAUAUGUAAUUAU	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN520_c0_g1_3830_TPlot.pdf
TRINITY_DN520_c0_g1:853	si_s508	TRINITY_DN520_c0_g1	841	862	853	-22.80	-16.40	0.719298245614035	5.5	1-13,862-850;15-18,847-844	14-14,849-848[AILt];19-21,843-841[UP3]	...((((..(((((((((((((&)))))))))))))-.))))...	ACAGAGAUCUAUAGAAUUGUUU&AAACAAUUCUAUA-UUCUUAAU	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN520_c0_g1_853_TPlot.pdf
TRINITY_DN520_c0_g1:856	si_s505	TRINITY_DN520_c0_g1	844	865	856	-24.70	-16.10	0.651821862348178	7.5	4-16,862-850;18-21,847-844	1-3,865-863[UP5];17-17,849-848[AILt]	((((..(((((((((((((...&...)))))))))))))-.))))	GAGAUCUAUAGAAUUGUUUCCC&ACAAAACAAUUCUAUA-UUCUU	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN520_c0_g1_856_TPlot.pdf
TRINITY_DN5213_c0_g1:1520	si_a891	TRINITY_DN5213_c0_g1	1509	1529	1520	-22.90	-15.04	0.656768558951965	7.5	1-12,1529-1518;18-21,1512-1509	13-17,1517-1513[SIL]	((((.....((((((((((((&)))))))))))).....))))	UUGCGAGGAGUUACUGUAUUG&CAAUAUAGUAAUAAUAAGUAA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a891_TRINITY_DN5213_c0_g1_1520_TPlot.pdf
TRINITY_DN521_c0_g1:167	si_s531	TRINITY_DN521_c0_g1	156	176	167	-30.00	-19.78	0.659333333333333	7	1-2,176-175;6-13,171-164;15-21,162-156	3-5,174-172[SIL];14-14,163-163[SIL]	(((((((.((((((((...((&))...)))))))).)))))))	GAUCGGAGCAAAAAUGCUGUC&GAAAUCAUUUUUGAUCCGAUC	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN521_c0_g1_167_TPlot.pdf
TRINITY_DN521_c0_g1:3319	si_a870	TRINITY_DN521_c0_g1	3307	3328	3319	-24.80	-16.20	0.653225806451613	7	1-6,3328-3323;8-10,3321-3319;11-21,3317-3307	7-7,3322-3322[SIL];x-x,3318-3318[BULt]	(((((((((((.(((.((((((&)))))).)))-)))))))))))	GUUGUAACUAAUGUCAUUAGUA&UAUUAAAGAU-UUAGUUGCAAU	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN521_c0_g1_3319_TPlot.pdf
TRINITY_DN5220_c1_g1:1883	si_s62	TRINITY_DN5220_c1_g1	1872	1892	1883	-26.50	-17.70	0.667924528301887	8	2-4,1891-1889;7-19,1886-1874	1-1,1892-1892[UP5];5-6,1888-1887[SIL];20-21,1873-1872[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	ACAAAAUAGAAGUUGAGGACG&AGUUAGCAACUUCUAUUUUUU	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN5220_c1_g1_1883_TPlot.pdf
TRINITY_DN52233_c0_g1:30	si_s888	TRINITY_DN52233_c0_g1	19	39	30	-26.80	-17.70	0.66044776119403	18	10-20,30-20	1-9,39-31[UP5];21-21,19-19[UP3]	.(((((((((((.........&.........))))))))))).	CAGAGAAAGCCUUAGUUUCAG&AAAAUAAAUAGGCUUUCUCUU	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN52233_c0_g1_30_TPlot.pdf
TRINITY_DN52233_c0_g1:476	si_a786	TRINITY_DN52233_c0_g1	464	485	476	-26.60	-18.30	0.68796992481203	10	1-10,485-476;12-20,473-465	11-11,475-474[AILt];21-21,464-464[UP3]	.(((((((((..((((((((((&))))))))))-.))))))))).	UGGAAAUGGACUAGGUGGAGGA&UCUUCUAUUU-UUCUAUUUUCC	2	0.999996654681886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN52233_c0_g1_476_TPlot.pdf
TRINITY_DN52233_c0_g1:477	si_a785	TRINITY_DN52233_c0_g1	465	486	477	-25.90	-18.50	0.714285714285714	10	2-11,485-476;13-21,473-465	1-1,486-486[UP5];12-12,475-474[AILt]	(((((((((..((((((((((.&.))))))))))-.)))))))))	GGAAAUGGACUAGGUGGAGGAA&CUCUUCUAUUU-UUCUAUUUUC	3	0.999999881950583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN52233_c0_g1_477_TPlot.pdf
TRINITY_DN52233_c0_g1:478	si_a784	TRINITY_DN52233_c0_g1	466	487	478	-24.70	-16.40	0.663967611336032	11	3-12,485-476;14-21,473-466	1-2,487-486[UP5];13-13,475-474[AILt]	((((((((..((((((((((..&..))))))))))-.))))))))	GAAAUGGACUAGGUGGAGGAAU&ACUCUUCUAUUU-UUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN52233_c0_g1_478_TPlot.pdf
TRINITY_DN52233_c0_g1:481	si_a789	TRINITY_DN52233_c0_g1	468	490	481	-24.80	-17.50	0.705645161290323	9	2-15,489-476;16-19,473-470	1-1,490-490[UP5];x-x,475-474[BULt];20-21,469-468[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	AAUGGACUAGGUGGAGGAAUAGG&UCUAUUUUUCUAUUU--UCCAAU	3	0.999987324386543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN52233_c0_g1_481_TPlot.pdf
TRINITY_DN52233_c0_g1:482	si_a788	TRINITY_DN52233_c0_g1	469	491	482	-24.80	-18.90	0.762096774193548	8	1-16,491-476;17-20,473-470	x-x,475-474[BULt];21-21,469-469[UP3]	.((((..((((((((((((((((&))))))))))))))))--)))).	AUGGACUAGGUGGAGGAAUAGGA&UUCUAUUUUUCUAUUU--UCCAA	2	0.941441084787653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN52233_c0_g1_482_TPlot.pdf
TRINITY_DN52233_c0_g1:483	si_a787	TRINITY_DN52233_c0_g1	470	492	483	-26.30	-18.90	0.718631178707224	7.5	2-17,491-476;18-21,473-470	1-1,492-492[UP5];x-x,475-474[BULt]	((((..((((((((((((((((.&.))))))))))))))))--))))	UGGACUAGGUGGAGGAAUAGGAU&CUUCUAUUUUUCUAUUU--UCCA	2	0.998733041046006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN52233_c0_g1_483_TPlot.pdf
TRINITY_DN52233_c0_g1:487	si_a547	TRINITY_DN52233_c0_g1	476	499	487	-26.90	-18.82	0.699628252788104	14	1-4,499-496;7-21,490-476	5-6,495-491[AILt]	(((((((((((((((.....((((&))))---..)))))))))))))))	AGGUGGAGGAAUAGGAUUAGGAGC&GUUC---AAUCUAUUUCUUUAUCU	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN52233_c0_g1_487_TPlot.pdf
TRINITY_DN52233_c0_g1:524	si_s862	TRINITY_DN52233_c0_g1	510	533	524	-40.10	-26.30	0.655860349127182	9.5	1-6,533-528;8-11,526-523;12-14,519-517;16-21,515-510	7-7,527-527[SIL];x-x,522-520[BULt];15-15,516-516[SIL]	((((((.(((...((((.((((((&)))))).))))---))).))))))	CUAGGAGCGGGAUUAGGACUAGGA&UCCUAGACCUA---CCGGUCUUAG	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s862_TRINITY_DN52233_c0_g1_524_TPlot.pdf
TRINITY_DN52233_c0_g1:525	si_a29	TRINITY_DN52233_c0_g1	514	534	525	-31.00	-21.00	0.67741935483871	7	1-13,534-522;16-18,519-517;20-20,515-515	14-15,521-520[SIL];19-19,516-516[SIL];21-21,514-514[UP3]	.(.(((..(((((((((((((&)))))))))))))..))).).	GAGCGGGAUUAGGACUAGGAA&UUUUUAGUUCUAAGACCGGUA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN52233_c0_g1_525_TPlot.pdf
TRINITY_DN52233_c0_g1:526	si_a28	TRINITY_DN52233_c0_g1	515	535	526	-30.70	-20.60	0.671009771986971	7	2-14,534-522;17-19,519-517;21-21,515-515	1-1,535-535[UP5];15-16,521-520[SIL];20-20,516-516[SIL]	(.(((..(((((((((((((.&.)))))))))))))..))).)	AGCGGGAUUAGGACUAGGAAG&AUUUUUAGUUCUAAGACCGGU	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN52233_c0_g1_526_TPlot.pdf
TRINITY_DN52233_c0_g1:527	si_a27	TRINITY_DN52233_c0_g1	516	536	527	-30.30	-20.40	0.673267326732673	9	3-15,534-522;18-20,519-517	1-2,536-535[UP5];16-17,521-520[SIL];21-21,516-516[UP3]	.(((..(((((((((((((..&..)))))))))))))..))).	GCGGGAUUAGGACUAGGAAGA&UAUUUUUAGUUCUAAGACCGG	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN52233_c0_g1_527_TPlot.pdf
TRINITY_DN52233_c0_g1:528	si_a26	TRINITY_DN52233_c0_g1	517	537	528	-28.00	-20.10	0.717857142857143	10	4-16,534-522;19-21,519-517	1-3,537-535[UP5];17-18,521-520[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	CGGGAUUAGGACUAGGAAGAG&UUAUUUUUAGUUCUAAGACCG	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN52233_c0_g1_528_TPlot.pdf
TRINITY_DN52233_c0_g1:529	si_a25	TRINITY_DN52233_c0_g1	518	538	529	-26.50	-17.70	0.667924528301887	11.5	5-17,534-522;20-21,519-518	1-4,538-535[UP5];18-19,521-520[SIL]	((..(((((((((((((....&....)))))))))))))..))	GGGAUUAGGACUAGGAAGAGG&UUUAUUUUUAGUUCUAAGACC	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN52233_c0_g1_529_TPlot.pdf
TRINITY_DN52233_c0_g1:532	si_a22	TRINITY_DN52233_c0_g1	521	543	532	-23.50	-15.70	0.668085106382979	11.5	1-6,543-538;8-20,534-522	7-7,537-535[AILt];21-21,521-521[UP3]	.(((((((((((((...((((((&))))))--.))))))))))))).	AUUAGGACUAGGAAGAGGAGUAG&CUAUUU--AUUUUUAGUUCUAAG	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN52233_c0_g1_532_TPlot.pdf
TRINITY_DN52233_c0_g1:533	si_a21	TRINITY_DN52233_c0_g1	522	544	533	-24.30	-18.50	0.761316872427984	10.5	1-7,544-538;9-21,534-522	8-8,537-535[AILt]	(((((((((((((...(((((((&)))))))--.)))))))))))))	UUAGGACUAGGAAGAGGAGUAGG&CCUAUUU--AUUUUUAGUUCUAA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN52233_c0_g1_533_TPlot.pdf
TRINITY_DN52233_c0_g1:534	si_a20	TRINITY_DN52233_c0_g1	523	545	534	-26.70	-17.90	0.670411985018727	11	2-8,544-538;10-21,534-523	1-1,545-545[UP5];9-9,537-535[AILt]	((((((((((((...(((((((.&.)))))))--.))))))))))))	UAGGACUAGGAAGAGGAGUAGGA&GCCUAUUU--AUUUUUAGUUCUA	2	0.999748768346625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN52233_c0_g1_534_TPlot.pdf
TRINITY_DN52233_c0_g1:535	si_s73	TRINITY_DN52233_c0_g1	522	544	535	-24.00	-17.10	0.7125	9.5	2-15,543-530;16-19,527-524	1-1,544-544[UP5];x-x,529-528[BULt];20-21,523-522[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	UUAGGACUAGGAAGAGGAGUAGG&UCUAUUUUUUUUCUU--UCCUUU	2	0.999999999643921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN52233_c0_g1_535_TPlot.pdf
TRINITY_DN52233_c0_g1:536	si_s72	TRINITY_DN52233_c0_g1	523	545	536	-24.10	-18.70	0.775933609958506	8.5	1-16,545-530;17-20,527-524	x-x,529-528[BULt];21-21,523-523[UP3]	.((((..((((((((((((((((&))))))))))))))))--)))).	UAGGACUAGGAAGAGGAGUAGGA&UUCUAUUUUUUUUCUU--UCCUU	2	0.999170182561266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN52233_c0_g1_536_TPlot.pdf
TRINITY_DN52233_c0_g1:537	si_s71	TRINITY_DN52233_c0_g1	524	546	537	-25.70	-21.90	0.852140077821012	7.5	1-17,546-530;18-21,527-524	x-x,529-528[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	AGGACUAGGAAGAGGAGUAGGAG&CUUCUAUUUUUUUUCUU--UCCU	0	0.0397139398212846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN52233_c0_g1_537_TPlot.pdf
TRINITY_DN52233_c0_g1:538	si_s70	TRINITY_DN52233_c0_g1	525	547	538	-25.80	-21.00	0.813953488372093	8	2-18,546-530;19-21,527-525	1-1,547-547[UP5];x-x,529-528[BULt]	(((..(((((((((((((((((.&.)))))))))))))))))--)))	GGACUAGGAAGAGGAGUAGGAGG&ACUUCUAUUUUUUUUCUU--UCC	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN52233_c0_g1_538_TPlot.pdf
TRINITY_DN52233_c0_g1:539	si_s69	TRINITY_DN52233_c0_g1	528	548	539	-23.40	-18.10	0.773504273504274	10	3-19,546-530	1-2,548-547[UP5];20-21,529-528[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CUAGGAAGAGGAGUAGGAGGA&AACUUCUAUUUUUUUUCUUUC	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN52233_c0_g1_539_TPlot.pdf
TRINITY_DN52233_c0_g1:540	si_s68	TRINITY_DN52233_c0_g1	529	549	540	-23.10	-18.10	0.783549783549784	10.5	4-20,546-530	1-3,549-547[UP5];21-21,529-529[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAGGAAGAGGAGUAGGAGGAC&CAACUUCUAUUUUUUUUCUUU	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN52233_c0_g1_540_TPlot.pdf
TRINITY_DN52233_c0_g1:541	si_s67	TRINITY_DN52233_c0_g1	530	550	541	-25.60	-18.10	0.70703125	11	5-21,546-530	1-4,550-547[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGGAAGAGGAGUAGGAGGACU&GCAACUUCUAUUUUUUUUCUU	3	0.999985394663513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN52233_c0_g1_541_TPlot.pdf
TRINITY_DN52233_c0_g1:542	si_a327	TRINITY_DN52233_c0_g1	531	552	542	-28.40	-19.10	0.672535211267606	9.5	2-3,551-550;4-17,548-535;19-21,533-531	1-1,552-552[UP5];x-x,549-549[BULt];18-18,534-534[SIL]	(((.((((((((((((((.((.&.))-)))))))))))))).)))	GGAAGAGGAGUAGGAGGACUCG&UGA-UUUUUUUAUUCCUUGUCC	3	0.999999661750396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN52233_c0_g1_542_TPlot.pdf
TRINITY_DN52233_c0_g1:559	si_a29	TRINITY_DN52233_c0_g1	547	568	559	-31.00	-22.30	0.719354838709677	9.5	1-6,568-563;8-18,561-551;19-20,549-548	7-7,562-562[SIL];x-x,550-550[BULt];21-21,547-547[UP3]	.((.(((((((((((.((((((&)))))).)))))))))))-)).	GACUCGGUCUUGGAGGUGGAGG&UUUUUAGUUCUAAGACCG-GUA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN52233_c0_g1_559_TPlot.pdf
TRINITY_DN52233_c0_g1:560	si_a28	TRINITY_DN52233_c0_g1	548	569	560	-30.70	-23.20	0.755700325732899	9	1-7,569-563;9-19,561-551;20-21,549-548	8-8,562-562[SIL];x-x,550-550[BULt]	((.(((((((((((.(((((((&))))))).)))))))))))-))	ACUCGGUCUUGGAGGUGGAGGU&AUUUUUAGUUCUAAGACCG-GU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN52233_c0_g1_560_TPlot.pdf
TRINITY_DN52233_c0_g1:562	si_a26	TRINITY_DN52233_c0_g1	551	571	562	-28.00	-21.80	0.778571428571429	10.5	3-9,569-563;11-21,561-551	1-2,571-570[UP5];10-10,562-562[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	CGGUCUUGGAGGUGGAGGUCU&UUAUUUUUAGUUCUAAGACCG	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN52233_c0_g1_562_TPlot.pdf
TRINITY_DN52233_c0_g1:563	si_a25	TRINITY_DN52233_c0_g1	552	572	563	-26.50	-20.00	0.754716981132076	12.5	4-10,569-563;12-21,561-552	1-3,572-570[UP5];11-11,562-562[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GGUCUUGGAGGUGGAGGUCUA&UUUAUUUUUAGUUCUAAGACC	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN52233_c0_g1_563_TPlot.pdf
TRINITY_DN52233_c0_g1:564	si_a24	TRINITY_DN52233_c0_g1	553	573	564	-24.20	-16.60	0.685950413223141	14	5-11,569-563;13-21,561-553	1-4,573-570[UP5];12-12,562-562[SIL]	(((((((((.(((((((....&....))))))).)))))))))	GUCUUGGAGGUGGAGGUCUAG&AUUUAUUUUUAGUUCUAAGAC	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN52233_c0_g1_564_TPlot.pdf
TRINITY_DN52233_c0_g1:567	si_s861	TRINITY_DN52233_c0_g1	544	576	567	-40.10	-27.80	0.693266832917706	24.5	1-11,576-566;12-15,554-551;16-20,549-545	x-x,565-555[BULt];x-x,550-550[BULt];21-21,544-544[UP3]	.(((((.((((...........(((((((((((&)))))))))))-----------))))-))))).	GAGGACUCGGUCUUGGAGGUGGAGGUCUAGGAG&CUCCUAGACCU-----------ACCG-GUCUUA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s861_TRINITY_DN52233_c0_g1_567_TPlot.pdf
TRINITY_DN52233_c0_g1:569	si_s859	TRINITY_DN52233_c0_g1	546	578	569	-42.50	-28.70	0.675294117647059	13.5	2-13,577-566;14-17,554-551;18-21,549-546	1-1,578-578[UP5];x-x,565-555[BULt];x-x,550-550[BULt]	((((.((((...........((((((((((((.&.))))))))))))-----------))))-))))	GGACUCGGUCUUGGAGGUGGAGGUCUAGGAGUA&GACUCCUAGACCU-----------ACCG-GUCU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s859_TRINITY_DN52233_c0_g1_569_TPlot.pdf
TRINITY_DN52233_c0_g1:572	si_a552	TRINITY_DN52233_c0_g1	560	581	572	-33.10	-22.40	0.676737160120846	9.5	1-10,581-572;13-18,569-564;19-20,562-561	11-12,571-570[SIL];x-x,563-563[BULt];21-21,560-560[UP3]	.((.((((((..((((((((((&))))))))))..))))))-)).	AGGUGGAGGUCUAGGAGUAGGU&AUCUAUUUCUUUAUCUCC-CCG	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN52233_c0_g1_572_TPlot.pdf
TRINITY_DN52233_c0_g1:580	si_a322	TRINITY_DN52233_c0_g1	572	588	580	-27.00	-18.90	0.7	9	1-9,588-580;14-21,579-572	10-13,x-x[BULq]	((((((((----(((((((((&)))))))))....))))))))	AGGAGUAG----GUCAUGGAU&AUCCAUGAUUUUUUUAUUCCU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN52233_c0_g1_580_TPlot.pdf
TRINITY_DN52236_c0_g1:69	si_s82	TRINITY_DN52236_c0_g1	58	78	69	-28.90	-21.00	0.726643598615917	4.5	1-12,78-67;15-21,64-58	13-14,66-65[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AAGAAGGCAAAAGGGAAGAGA&UUUCUUUCCUUUCUUCUUCUU	4	0.99999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN52236_c0_g1_69_TPlot.pdf
TRINITY_DN52236_c0_g1:70	si_s81	TRINITY_DN52236_c0_g1	59	79	70	-28.90	-20.80	0.719723183391003	4.5	1-13,79-67;16-21,64-59	14-15,66-65[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	AGAAGGCAAAAGGGAAGAGAA&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN52236_c0_g1_70_TPlot.pdf
TRINITY_DN5223_c0_g1:319	si_a643	TRINITY_DN5223_c0_g1	307	328	319	-28.30	-18.40	0.65017667844523	7	3-15,326-314;17-21,311-307	1-2,328-327[UP5];16-16,313-312[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	UCUGAGAAUAUUACUCAAGAUU&UUUUUUGAGUAAUAU-AUCGGG	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN5223_c0_g1_319_TPlot.pdf
TRINITY_DN5223_c0_g1:320	si_a642	TRINITY_DN5223_c0_g1	308	329	320	-25.90	-17.30	0.667953667953668	8.5	4-16,326-314;18-21,311-308	1-3,329-327[UP5];17-17,313-312[AILt]	((((..(((((((((((((...&...)))))))))))))-.))))	CUGAGAAUAUUACUCAAGAUUU&UUUUUUUGAGUAAUAU-AUCGG	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5223_c0_g1_320_TPlot.pdf
TRINITY_DN5224_c0_g1:179	si_a318	TRINITY_DN5224_c0_g1	168	188	179	-22.50	-15.60	0.693333333333333	13	7-20,182-169	1-6,188-183[UP5];21-21,168-168[UP3]	.((((((((((((((......&......)))))))))))))).	UUAAGAAAGUCAUGGCUGUUA&AUUUAUCCAUGAUUUUUUUAU	3	0.999999965662852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5224_c0_g1_179_TPlot.pdf
TRINITY_DN5224_c0_g1:380	si_a74	TRINITY_DN5224_c0_g1	367	389	380	-22.20	-14.58	0.656756756756757	12	2-10,388-380;13-20,375-368	1-1,389-389[UP5];11-12,379-376[AILt];21-21,367-367[UP3]	.((((((((....(((((((((.&.)))))))))--..)))))))).	CAAUAAUGACGAUGACGAUUUGG&UCAAAUUGUU--UUUCAUUAUUA	4	0.999999999989136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN5224_c0_g1_380_TPlot.pdf
TRINITY_DN5224_c0_g1:382	si_a72	TRINITY_DN5224_c0_g1	369	391	382	-21.90	-15.18	0.693150684931507	10	2-12,390-380;15-21,375-369	1-1,391-391[UP5];13-14,379-376[AILt]	(((((((....(((((((((((.&.)))))))))))--..)))))))	AUAAUGACGAUGACGAUUUGGAU&UUUCAAAUUGUU--UUUCAUUAU	3	0.999999941876609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN5224_c0_g1_382_TPlot.pdf
TRINITY_DN5225_c0_g1:850	si_s588	TRINITY_DN5225_c0_g1	837	859	850	-31.20	-20.60	0.66025641025641	7	2-13,858-847;14-18,844-840	1-1,859-859[UP5];x-x,846-845[BULt];19-21,839-837[UP3]	...(((((..((((((((((((.&.))))))))))))--)))))...	UAGUGGAUUUUUGUCCAUGAUUG&AAAUCAUGGAUAA--AUCCAAGC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s588_TRINITY_DN5225_c0_g1_850_TPlot.pdf
TRINITY_DN5226_c0_g1:2219	si_a734	TRINITY_DN5226_c0_g1	2205	2228	2219	-42.40	-30.60	0.721698113207547	9	1-10,2228-2219;11-11,2217-2217;12-13,2215-2214;14-19,2212-2207	x-x,2218-2218[BULt];x-x,2216-2216[BULt];x-x,2213-2213[BULt];20-21,2206-2205[UP3]	..((((((.((.(.((((((((((&))))))))))-)-))-))))))..	UGGGCCAGAGGCGCUGAAGGUGCC&GGCAUCUUUA-C-CC-CUGGCCAU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN5226_c0_g1_2219_TPlot.pdf
TRINITY_DN5226_c0_g1:229	si_a68	TRINITY_DN5226_c0_g1	218	240	229	-25.40	-17.06	0.671653543307087	12.5	1-8,240-233;12-20,227-219	9-11,232-228[AILt];21-21,218-218[UP3]	.(((((((((.....((((((((&))))))))--...))))))))).	AGAAGAACAACAUAAGAAAGAGG&CUUCUUUC--AAAUUGUUUUUCA	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5226_c0_g1_229_TPlot.pdf
TRINITY_DN5226_c0_g1:237	si_s81	TRINITY_DN5226_c0_g1	218	247	237	-28.90	-19.00	0.657439446366782	12	1-9,247-239;10-15,237-232;16-21,223-218	x-x,238-238[BULt];x-x,231-224[BULt]	((((((........((((((.(((((((((&)))))))))-))))))--------))))))	AGAAGAACAACAUAAGAAAGAGGAAGAAGA&UUUUCUUUC-CUUUCU--------UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN5226_c0_g1_237_TPlot.pdf
TRINITY_DN5226_c0_g1:239	si_s80	TRINITY_DN5226_c0_g1	219	248	239	-28.20	-18.40	0.652482269503546	12	1-10,248-239;11-16,237-232;17-21,223-219	x-x,238-238[BULt];x-x,231-224[BULt]	(((((........((((((.((((((((((&))))))))))-))))))--------)))))	GAAGAACAACAUAAGAAAGAGGAAGAAGAA&UUUUUCUUUC-CUUUCU--------UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5226_c0_g1_239_TPlot.pdf
TRINITY_DN5226_c0_g1:242	si_s77	TRINITY_DN5226_c0_g1	230	251	242	-25.50	-16.80	0.658823529411765	9	4-13,248-239;14-20,237-231	1-3,251-249[UP5];x-x,238-238[BULt];21-21,230-230[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	UAAGAAAGAGGAAGAAGAACUA&UUUUUUUUCUUUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c0_g1_242_TPlot.pdf
TRINITY_DN5226_c0_g1:243	si_s76	TRINITY_DN5226_c0_g1	231	252	243	-23.60	-16.80	0.711864406779661	9.5	5-14,248-239;15-21,237-231	1-4,252-249[UP5];x-x,238-238[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	AAGAAAGAGGAAGAAGAACUAU&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5226_c0_g1_243_TPlot.pdf
TRINITY_DN5226_c0_g1:281	si_s76	TRINITY_DN5226_c0_g1	262	290	281	-23.60	-16.10	0.682203389830509	20	2-11,289-280;12-21,271-262	1-1,290-290[UP5];x-x,279-272[BULt]	((((((((((........((((((((((.&.))))))))))--------))))))))))	AAGAAGGGGACCUACGUAAGAAAGAAGAC&AUUUUUUUUCU--------UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5226_c0_g1_281_TPlot.pdf
TRINITY_DN5226_c0_g1:3116	si_a60	TRINITY_DN5226_c0_g1	3105	3124	3116	-32.20	-21.20	0.658385093167702	7	1-8,3124-3117;10-18,3116-3108	9-9,x-x[BULq];19-21,3107-3105[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AGAUUGAAAGGA-CGAGUUGA&UCGACUCGCUUCUUUCAAAUU	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN5226_c0_g1_3116_TPlot.pdf
TRINITY_DN5226_c0_g1:3136	si_a650	TRINITY_DN5226_c0_g1	3127	3145	3136	-33.30	-21.90	0.657657657657658	8.5	1-3,3145-3143;6-15,3140-3131;18-21,3130-3127	4-5,3142-3141[SIL];16-17,x-x[BULq]	((((--((((((((((..(((&)))..))))))))))..))))	GGUA--UCCCGGUGUAGGACU&AGUAAUAUAUCGGGAAAUGCC	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a650_TRINITY_DN5226_c0_g1_3136_TPlot.pdf
TRINITY_DN5226_c0_g1:349	si_s75	TRINITY_DN5226_c0_g1	337	358	349	-24.00	-16.40	0.683333333333333	10	5-15,354-344;16-20,342-338	1-4,358-355[UP5];x-x,343-343[BULt];21-21,337-337[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	UGAAAGAGAAAGAAAAGACAAA&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5226_c0_g1_349_TPlot.pdf
TRINITY_DN5226_c0_g1:395	si_a332	TRINITY_DN5226_c0_g1	384	404	395	-30.60	-20.00	0.65359477124183	5	1-5,404-400;7-15,398-390;17-20,388-385	6-6,399-399[SIL];16-16,389-389[SIL];21-21,384-384[UP3]	.((((.(((((((((.(((((&))))).))))))))).)))).	CUUCGCGACAAGGAAGAAGAA&UUUUUAUUCCUUGUCCCGAAA	4	0.999999626583502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN5226_c0_g1_395_TPlot.pdf
TRINITY_DN5226_c0_g1:396	si_a331	TRINITY_DN5226_c0_g1	385	405	396	-30.60	-20.10	0.656862745098039	4.5	1-6,405-400;8-16,398-390;18-21,388-385	7-7,399-399[SIL];17-17,389-389[SIL]	((((.(((((((((.((((((&)))))).))))))))).))))	UUCGCGACAAGGAAGAAGAAG&UUUUUUAUUCCUUGUCCCGAA	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN5226_c0_g1_396_TPlot.pdf
TRINITY_DN5226_c0_g1:6074	si_a776	TRINITY_DN5226_c0_g1	6063	6082	6074	-27.10	-18.10	0.66789667896679	9	1-3,6082-6080;5-17,6079-6067	4-4,x-x[BULq];18-21,6066-6063[UP3]	....(((((((((((((-(((&))).)))))))))))))....	GUCCUGGAGGAGUUGGG-CAA&UUGAUUCAACUCUUCUAUUUU	4	0.999805666856728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN5226_c0_g1_6074_TPlot.pdf
TRINITY_DN5226_c1_g1:163	si_s78	TRINITY_DN5226_c1_g1	151	173	163	-26.20	-18.50	0.706106870229008	7	1-8,173-166;10-16,163-157;17-21,155-151	9-9,165-164[AILt];x-x,156-156[BULt]	(((((.(((((((..((((((((&))))))))-.)))))))-)))))	AGAGGCAGAGGAAUUGAAAAAGA&UUUUUUUC-UUUCCUUU-CUUCU	2	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5226_c1_g1_163_TPlot.pdf
TRINITY_DN5226_c1_g1:164	si_s77	TRINITY_DN5226_c1_g1	152	174	164	-25.50	-18.10	0.709803921568627	7	1-9,174-166;11-17,163-157;18-21,155-152	10-10,165-164[AILt];x-x,156-156[BULt]	((((.(((((((..(((((((((&)))))))))-.)))))))-))))	GAGGCAGAGGAAUUGAAAAAGAA&UUUUUUUUC-UUUCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g1_164_TPlot.pdf
TRINITY_DN5226_c1_g1:186	si_s79	TRINITY_DN5226_c1_g1	174	196	186	-26.20	-18.40	0.702290076335878	6.5	1-8,196-189;9-12,187-184;14-21,181-174	x-x,188-188[BULt];13-13,183-182[AILt]	((((((((..((((.((((((((&))))))))-))))-.))))))))	AAGAGGAAUUGGAACAGAAAGAA&UUUUUUCU-UUCC-UUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5226_c1_g1_186_TPlot.pdf
TRINITY_DN5226_c1_g1:189	si_s77	TRINITY_DN5226_c1_g1	176	198	189	-25.50	-18.10	0.709803921568627	6.5	1-10,198-189;11-14,187-184;16-21,181-176	x-x,188-188[BULt];15-15,183-182[AILt]	((((((..((((.((((((((((&))))))))))-))))-.))))))	GAGGAAUUGGAACAGAAAGAAGA&UUUUUUUUCU-UUCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g1_189_TPlot.pdf
TRINITY_DN5226_c1_g1:195	si_s71	TRINITY_DN5226_c1_g1	183	203	195	-25.70	-17.20	0.669260700389105	7	1-5,203-199;7-16,198-189;17-20,187-184	6-6,x-x[BULq];x-x,188-188[BULt];21-21,183-183[UP3]	.((((.((((((((((-(((((&))))).))))))))))-)))).	UGGAACAGAAAGAAGA-AGAGG&CUUCUAUUUUUUUUCU-UUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5226_c1_g1_195_TPlot.pdf
TRINITY_DN5226_c1_g1:196	si_s70	TRINITY_DN5226_c1_g1	184	204	196	-25.80	-16.80	0.651162790697674	7	2-6,203-199;8-17,198-189;18-21,187-184	1-1,204-204[UP5];7-7,x-x[BULq];x-x,188-188[BULt]	((((.((((((((((-(((((.&.))))).))))))))))-))))	GGAACAGAAAGAAGA-AGAGGA&ACUUCUAUUUUUUUUCU-UUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5226_c1_g1_196_TPlot.pdf
TRINITY_DN5226_c1_g1:216	si_s83	TRINITY_DN5226_c1_g1	197	226	216	-30.90	-20.90	0.676375404530744	11.5	1-7,226-220;8-13,218-213;14-21,204-197	x-x,219-219[BULt];x-x,212-205[BULt]	((((((((........((((((.(((((((&)))))))-))))))--------))))))))	GAAGAGGAAAUUCGUAAGAAAGAGGAAGAA&UUCUUUC-CUUUCU--------UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5226_c1_g1_216_TPlot.pdf
TRINITY_DN5226_c1_g1:260	si_s70	TRINITY_DN5226_c1_g1	249	272	260	-25.80	-17.90	0.693798449612403	10	1-6,272-267;7-20,263-250	x-x,266-264[BULt];21-21,249-249[UP3]	.((((((((((((((...((((((&))))))---)))))))))))))).	AGAAAGAGGAGGAAUUGAAGAAGU&ACUUCU---AUUUUUUUUCUUUCC	3	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5226_c1_g1_260_TPlot.pdf
TRINITY_DN5226_c1_g1:261	si_s69	TRINITY_DN5226_c1_g1	250	273	261	-23.40	-19.10	0.816239316239316	9	1-7,273-267;8-21,263-250	x-x,266-264[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GAAAGAGGAGGAAUUGAAGAAGUU&AACUUCU---AUUUUUUUUCUUUC	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5226_c1_g1_261_TPlot.pdf
TRINITY_DN5226_c1_g1:262	si_s68	TRINITY_DN5226_c1_g1	251	274	262	-23.10	-15.90	0.688311688311688	9.5	2-8,273-267;9-21,263-251	1-1,274-274[UP5];x-x,266-264[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	AAAGAGGAGGAAUUGAAGAAGUUA&CAACUUCU---AUUUUUUUUCUUU	3	0.999999999999948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5226_c1_g1_262_TPlot.pdf
TRINITY_DN5226_c1_g1:266	si_a326	TRINITY_DN5226_c1_g1	254	275	266	-26.20	-17.90	0.683206106870229	8.5	2-12,274-264;13-18,262-257;20-21,255-254	1-1,275-275[UP5];x-x,263-263[BULt];19-19,256-256[SIL]	((.((((((.(((((((((((.&.)))))))))))-)))))).))	GAGGAGGAAUUGAAGAAGUUAG&AUGAUUUUUUUA-UUCCUUGUC	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5226_c1_g1_266_TPlot.pdf
TRINITY_DN5226_c1_g1:32	si_s79	TRINITY_DN5226_c1_g1	20	41	32	-26.20	-18.30	0.698473282442748	7	2-11,40-31;13-21,28-20	1-1,41-41[UP5];12-12,30-29[AILt]	(((((((((..((((((((((.&.))))))))))-.)))))))))	AAGAAGAAAAAGAAAGAAGAGG&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5226_c1_g1_32_TPlot.pdf
TRINITY_DN5226_c1_g1:33	si_s78	TRINITY_DN5226_c1_g1	21	42	33	-26.20	-19.00	0.725190839694656	6	1-12,42-31;14-21,28-21	13-13,30-29[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AGAAGAAAAAGAAAGAAGAGGA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5226_c1_g1_33_TPlot.pdf
TRINITY_DN5226_c1_g1:34	si_s77	TRINITY_DN5226_c1_g1	22	43	34	-25.50	-18.40	0.72156862745098	5	1-13,43-31;15-21,28-22	14-14,30-29[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	GAAGAAAAAGAAAGAAGAGGAA&UUUUUUUUCUUUC-CUUUCUUC	2	0.999999999997118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g1_34_TPlot.pdf
TRINITY_DN5226_c1_g1:35	si_s76	TRINITY_DN5226_c1_g1	23	44	35	-23.60	-16.20	0.686440677966102	5	1-14,44-31;16-21,28-23	15-15,30-29[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	AAGAAAAAGAAAGAAGAGGAAU&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5226_c1_g1_35_TPlot.pdf
TRINITY_DN5226_c1_g1:382	si_s78	TRINITY_DN5226_c1_g1	370	392	382	-26.20	-18.80	0.717557251908397	6.5	1-8,392-385;10-16,382-376;17-21,374-370	9-9,384-383[AILt];x-x,375-375[BULt]	(((((.(((((((..((((((((&))))))))-.)))))))-)))))	AGAAGCAGAGGAAUUGAAAAAGA&UUUUUUUC-UUUCCUUU-CUUCU	2	0.999999999997358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5226_c1_g1_382_TPlot.pdf
TRINITY_DN5226_c1_g1:383	si_s77	TRINITY_DN5226_c1_g1	371	393	383	-25.50	-18.40	0.72156862745098	6.5	1-9,393-385;11-17,382-376;18-21,374-371	10-10,384-383[AILt];x-x,375-375[BULt]	((((.(((((((..(((((((((&)))))))))-.)))))))-))))	GAAGCAGAGGAAUUGAAAAAGAA&UUUUUUUUC-UUUCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g1_383_TPlot.pdf
TRINITY_DN5226_c1_g1:405	si_s79	TRINITY_DN5226_c1_g1	393	415	405	-26.20	-18.40	0.702290076335878	6.5	1-8,415-408;9-12,406-403;14-21,400-393	x-x,407-407[BULt];13-13,402-401[AILt]	((((((((..((((.((((((((&))))))))-))))-.))))))))	AAGAGGAAUUGGAACAGAAAGAA&UUUUUUCU-UUCC-UUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5226_c1_g1_405_TPlot.pdf
TRINITY_DN5226_c1_g1:408	si_s77	TRINITY_DN5226_c1_g1	395	417	408	-25.50	-18.10	0.709803921568627	6.5	1-10,417-408;11-14,406-403;16-21,400-395	x-x,407-407[BULt];15-15,402-401[AILt]	((((((..((((.((((((((((&))))))))))-))))-.))))))	GAGGAAUUGGAACAGAAAGAAGA&UUUUUUUUCU-UUCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g1_408_TPlot.pdf
TRINITY_DN5226_c1_g1:41	si_s70	TRINITY_DN5226_c1_g1	30	50	41	-25.80	-18.10	0.701550387596899	6.5	2-5,49-46;7-20,44-31	1-1,50-50[UP5];6-6,45-45[SIL];21-21,30-30[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	AGAAAGAAGAGGAAUUGAAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999997973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5226_c1_g1_41_TPlot.pdf
TRINITY_DN5226_c1_g1:414	si_s71	TRINITY_DN5226_c1_g1	402	422	414	-25.70	-17.20	0.669260700389105	7	1-5,422-418;7-16,417-408;17-20,406-403	6-6,x-x[BULq];x-x,407-407[BULt];21-21,402-402[UP3]	.((((.((((((((((-(((((&))))).))))))))))-)))).	UGGAACAGAAAGAAGA-AGAGG&CUUCUAUUUUUUUUCU-UUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5226_c1_g1_414_TPlot.pdf
TRINITY_DN5226_c1_g1:415	si_s70	TRINITY_DN5226_c1_g1	403	423	415	-25.80	-16.80	0.651162790697674	7	2-6,422-418;8-17,417-408;18-21,406-403	1-1,423-423[UP5];7-7,x-x[BULq];x-x,407-407[BULt]	((((.((((((((((-(((((.&.))))).))))))))))-))))	GGAACAGAAAGAAGA-AGAGGA&ACUUCUAUUUUUUUUCU-UUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5226_c1_g1_415_TPlot.pdf
TRINITY_DN5226_c1_g1:42	si_s69	TRINITY_DN5226_c1_g1	31	51	42	-23.40	-18.10	0.773504273504274	7.5	3-6,49-46;8-21,44-31	1-2,51-50[UP5];7-7,45-45[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAAAGAAGAGGAAUUGAAGAA&AACUUCUAUUUUUUUUCUUUC	3	0.999958989673994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5226_c1_g1_42_TPlot.pdf
TRINITY_DN5226_c1_g1:435	si_s83	TRINITY_DN5226_c1_g1	416	445	435	-30.90	-20.90	0.676375404530744	11.5	1-7,445-439;8-13,437-432;14-21,423-416	x-x,438-438[BULt];x-x,431-424[BULt]	((((((((........((((((.(((((((&)))))))-))))))--------))))))))	GAAGAGGAAAUUCGUAAGAAAGAGGAAGAA&UUCUUUC-CUUUCU--------UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5226_c1_g1_435_TPlot.pdf
TRINITY_DN5226_c1_g1:47	si_s74	TRINITY_DN5226_c1_g1	36	56	47	-25.00	-17.50	0.7	7.5	1-11,56-46;14-20,43-37	12-13,45-44[SIL];21-21,36-36[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AAGAGGAAUUGAAGAAGAUAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5226_c1_g1_47_TPlot.pdf
TRINITY_DN5226_c1_g1:479	si_s70	TRINITY_DN5226_c1_g1	468	491	479	-25.80	-17.90	0.693798449612403	10	1-6,491-486;7-20,482-469	x-x,485-483[BULt];21-21,468-468[UP3]	.((((((((((((((...((((((&))))))---)))))))))))))).	AGAAAGAGGAGGAAUUGAAGAAGU&ACUUCU---AUUUUUUUUCUUUCC	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5226_c1_g1_479_TPlot.pdf
TRINITY_DN5226_c1_g1:48	si_s73	TRINITY_DN5226_c1_g1	37	57	48	-24.00	-19.10	0.795833333333333	5.5	1-12,57-46;15-21,43-37	13-14,45-44[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	AGAGGAAUUGAAGAAGAUAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5226_c1_g1_48_TPlot.pdf
TRINITY_DN5226_c1_g1:480	si_s69	TRINITY_DN5226_c1_g1	469	492	480	-23.40	-19.10	0.816239316239316	9	1-7,492-486;8-21,482-469	x-x,485-483[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GAAAGAGGAGGAAUUGAAGAAGUU&AACUUCU---AUUUUUUUUCUUUC	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5226_c1_g1_480_TPlot.pdf
TRINITY_DN5226_c1_g1:481	si_s68	TRINITY_DN5226_c1_g1	470	493	481	-23.10	-15.90	0.688311688311688	9.5	2-8,492-486;9-21,482-470	1-1,493-493[UP5];x-x,485-483[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	AAAGAGGAGGAAUUGAAGAAGUUA&CAACUUCU---AUUUUUUUUCUUU	2	0.999999998564711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5226_c1_g1_481_TPlot.pdf
TRINITY_DN5226_c1_g1:485	si_a326	TRINITY_DN5226_c1_g1	473	494	485	-26.20	-17.90	0.683206106870229	8.5	2-12,493-483;13-18,481-476;20-21,474-473	1-1,494-494[UP5];x-x,482-482[BULt];19-19,475-475[SIL]	((.((((((.(((((((((((.&.)))))))))))-)))))).))	GAGGAGGAAUUGAAGAAGUUAG&AUGAUUUUUUUA-UUCCUUGUC	3	0.999998456089634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5226_c1_g1_485_TPlot.pdf
TRINITY_DN5226_c1_g1:49	si_s72	TRINITY_DN5226_c1_g1	38	58	49	-24.10	-19.00	0.788381742738589	5	1-13,58-46;16-21,43-38	14-15,45-44[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	GAGGAAUUGAAGAAGAUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5226_c1_g1_49_TPlot.pdf
TRINITY_DN5226_c1_g1:62	si_s81	TRINITY_DN5226_c1_g1	45	72	62	-28.90	-18.80	0.650519031141869	17	1-9,72-64;10-12,62-60;13-20,53-46	x-x,63-63[BULt];x-x,59-54[BULt];21-21,45-45[UP3]	.((((((((......(((.(((((((((&)))))))))-)))------)))))))).	UGAAGAAGAUAGAACAAGAGAAAGAGGA&UUUUCUUUC-CUU------UCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN5226_c1_g1_62_TPlot.pdf
TRINITY_DN5226_c1_g1:64	si_s80	TRINITY_DN5226_c1_g1	46	73	64	-28.20	-19.10	0.677304964539007	10	1-10,73-64;11-13,62-60;14-21,53-46	x-x,63-63[BULt];x-x,59-54[BULt]	((((((((......(((.((((((((((&))))))))))-)))------))))))))	GAAGAAGAUAGAACAAGAGAAAGAGGAA&UUUUUCUUUC-CUU------UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5226_c1_g1_64_TPlot.pdf
TRINITY_DN5226_c1_g2:2896	si_s483	TRINITY_DN5226_c1_g2	2885	2904	2896	-21.40	-14.90	0.696261682242991	5.5	1-9,2904-2896;11-18,2895-2888	10-10,x-x[BULq];19-21,2887-2885[UP3]	...((((((((-(((((((((&))))))))).))))))))...	AUAAUUUGAAU-AAUAUAGGA&UCCUAUAUUUAUUUAAAUAUA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN5226_c1_g2_2896_TPlot.pdf
TRINITY_DN5226_c1_g2:3633	si_s83	TRINITY_DN5226_c1_g2	3619	3642	3633	-30.90	-20.40	0.660194174757282	6	1-7,3642-3636;9-16,3634-3627;17-21,3623-3619	8-8,3635-3635[SIL];x-x,3626-3624[BULt]	(((((...((((((((.(((((((&))))))).))))))))---)))))	GAAGAUAUGGAAGAAAAGAAAGAG&UUCUUUCCUUUCUUCU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5226_c1_g2_3633_TPlot.pdf
TRINITY_DN5226_c1_g2:3636	si_s80	TRINITY_DN5226_c1_g2	3625	3645	3636	-28.20	-18.50	0.656028368794326	6.5	1-10,3645-3636;12-19,3634-3627	11-11,3635-3635[SIL];20-21,3626-3625[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AUGGAAGAAAAGAAAGAGGAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5226_c1_g2_3636_TPlot.pdf
TRINITY_DN5226_c1_g2:3637	si_s79	TRINITY_DN5226_c1_g2	3626	3646	3637	-26.20	-18.60	0.709923664122137	6.5	2-11,3645-3636;13-20,3634-3627	1-1,3646-3646[UP5];12-12,3635-3635[SIL];21-21,3626-3626[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	UGGAAGAAAAGAAAGAGGAAC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5226_c1_g2_3637_TPlot.pdf
TRINITY_DN5226_c1_g2:3639	si_s77	TRINITY_DN5226_c1_g2	3628	3648	3639	-25.50	-17.50	0.686274509803922	8	4-13,3645-3636;15-21,3634-3628	1-3,3648-3646[UP5];14-14,3635-3635[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GAAGAAAAGAAAGAGGAACUC&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g2_3639_TPlot.pdf
TRINITY_DN5226_c1_g2:3660	si_a785	TRINITY_DN5226_c1_g2	3649	3669	3660	-25.90	-17.00	0.656370656370656	6	2-8,3668-3662;10-15,3660-3655;17-21,3653-3649	1-1,3669-3669[UP5];9-9,3661-3661[SIL];16-16,3654-3654[SIL]	(((((.((((((.(((((((.&.))))))).)))))).)))))	GAAAAGAGAGAACUAGAGGAA&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5226_c1_g2_3660_TPlot.pdf
TRINITY_DN5226_c1_g2:3811	si_s68	TRINITY_DN5226_c1_g2	3798	3820	3811	-23.10	-17.10	0.74025974025974	8.5	3-11,3818-3810;12-21,3807-3798	1-2,3820-3819[UP5];x-x,3809-3808[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	AAAGAAGAAAAAGAUAGAAGUAG&CAACUUCUAUU--UUUUUUCUUU	3	0.999978543656523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5226_c1_g2_3811_TPlot.pdf
TRINITY_DN5226_c1_g2:3812	si_s67	TRINITY_DN5226_c1_g2	3799	3821	3812	-25.60	-19.30	0.75390625	7.5	1-2,3821-3820;4-12,3818-3810;13-21,3807-3799	3-3,3819-3819[SIL];x-x,3809-3808[BULt]	(((((((((..(((((((((.((&)).)))))))))--)))))))))	AAGAAGAAAAAGAUAGAAGUAGC&GCAACUUCUAUU--UUUUUUCUU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN5226_c1_g2_3812_TPlot.pdf
TRINITY_DN5226_c1_g2:3813	si_s66	TRINITY_DN5226_c1_g2	3802	3822	3813	-26.30	-18.70	0.711026615969582	6	2-3,3821-3820;5-19,3818-3804	1-1,3822-3822[UP5];4-4,3819-3819[SIL];20-21,3803-3802[UP3]	..(((((((((((((((.((.&.)).)))))))))))))))..	AAGAAAAAGAUAGAAGUAGCA&AGCAACUUCUAUUUUUUUUCU	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN5226_c1_g2_3813_TPlot.pdf
TRINITY_DN5226_c1_g2:3814	si_s65	TRINITY_DN5226_c1_g2	3803	3823	3814	-26.00	-18.70	0.719230769230769	7	3-4,3821-3820;6-20,3818-3804	1-2,3823-3822[UP5];5-5,3819-3819[SIL];21-21,3803-3803[UP3]	.(((((((((((((((.((..&..)).))))))))))))))).	AGAAAAAGAUAGAAGUAGCAG&UAGCAACUUCUAUUUUUUUUC	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN5226_c1_g2_3814_TPlot.pdf
TRINITY_DN5226_c1_g2:3816	si_s63	TRINITY_DN5226_c1_g2	3805	3825	3816	-25.80	-18.60	0.72093023255814	5.5	1-3,3825-3823;5-6,3821-3820;8-21,3818-3805	4-4,3822-3822[SIL];7-7,3819-3819[SIL]	((((((((((((((.((.(((&))).)).))))))))))))))	AAAAAGAUAGAAGUAGCAGAC&GUUAGCAACUUCUAUUUUUUU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN5226_c1_g2_3816_TPlot.pdf
TRINITY_DN5226_c1_g2:3817	si_s62	TRINITY_DN5226_c1_g2	3806	3826	3817	-26.50	-17.70	0.667924528301887	6.5	2-4,3825-3823;6-7,3821-3820;9-21,3818-3806	1-1,3826-3826[UP5];5-5,3822-3822[SIL];8-8,3819-3819[SIL]	(((((((((((((.((.(((.&.))).)).)))))))))))))	AAAAGAUAGAAGUAGCAGACG&AGUUAGCAACUUCUAUUUUUU	3	0.999895932315747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN5226_c1_g2_3817_TPlot.pdf
TRINITY_DN5226_c1_g2:3971	si_s77	TRINITY_DN5226_c1_g2	3952	3980	3971	-25.50	-16.70	0.654901960784314	17	1-11,3980-3970;12-17,3962-3957;18-21,3955-3952	x-x,3969-3963[BULt];x-x,3956-3956[BULt]	((((.((((((.......(((((((((((&)))))))))))-------))))))-))))	GAAGAAAAGGAACUACAUAAGAAAGAAGA&UUUUUUUUCUU-------UCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g2_3971_TPlot.pdf
TRINITY_DN5226_c1_g2:3998	si_s83	TRINITY_DN5226_c1_g2	3979	4008	3998	-30.90	-20.90	0.676375404530744	11.5	1-7,4008-4002;8-13,4000-3995;14-21,3986-3979	x-x,4001-4001[BULt];x-x,3994-3987[BULt]	((((((((........((((((.(((((((&)))))))-))))))--------))))))))	GAAGAGGAAAAGCGUAAGAAAGAGGAAGAA&UUCUUUC-CUUUCU--------UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5226_c1_g2_3998_TPlot.pdf
TRINITY_DN5226_c1_g2:4052	si_s73	TRINITY_DN5226_c1_g2	4035	4061	4052	-24.00	-18.20	0.758333333333333	17	1-12,4061-4050;13-21,4043-4035	x-x,4049-4044[BULt]	(((((((((......((((((((((((&))))))))))))------)))))))))	GGAGGAAAGUAAAAAGGAAGAGAUAGA&UCUAUUUUUUUU------CUUUCCUUU	4	0.999999900358033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5226_c1_g2_4052_TPlot.pdf
TRINITY_DN5226_c1_g2:4054	si_s71	TRINITY_DN5226_c1_g2	4037	4063	4054	-25.70	-17.70	0.688715953307393	10	2-14,4062-4050;15-21,4043-4037	1-1,4063-4063[UP5];x-x,4049-4044[BULt]	(((((((......(((((((((((((.&.)))))))))))))------)))))))	AGGAAAGUAAAAAGGAAGAGAUAGAAA&CUUCUAUUUUUUUU------CUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5226_c1_g2_4054_TPlot.pdf
TRINITY_DN5226_c1_g2:4060	si_s76	TRINITY_DN5226_c1_g2	4048	4069	4060	-23.60	-16.00	0.677966101694915	6.5	2-11,4068-4059;13-14,4057-4056;15-21,4054-4048	1-1,4069-4069[UP5];12-12,4058-4058[SIL];x-x,4055-4055[BULt]	(((((((.((.((((((((((.&.)))))))))).))-)))))))	AAGGAAGAGAUAGAAAAAGAGG&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5226_c1_g2_4060_TPlot.pdf
TRINITY_DN5226_c1_g2:4062	si_a787	TRINITY_DN5226_c1_g2	4049	4072	4062	-26.30	-18.00	0.684410646387833	8.5	1-5,4072-4068;7-16,4065-4056;17-20,4053-4050	6-6,4067-4066[AILt];x-x,4055-4054[BULt];21-21,4049-4049[UP3]	.((((..((((((((((..(((((&)))))-.))))))))))--)))).	AGGAAGAGAUAGAAAAAGAGGAAG&CUUCU-AUUUUUCUAUU--UUCCA	2	0.999998809311826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN5226_c1_g2_4062_TPlot.pdf
TRINITY_DN5226_c1_g2:4063	si_a786	TRINITY_DN5226_c1_g2	4050	4073	4063	-26.60	-19.10	0.718045112781955	7.5	1-6,4073-4068;8-17,4065-4056;18-21,4053-4050	7-7,4067-4066[AILt];x-x,4055-4054[BULt]	((((..((((((((((..((((((&))))))-.))))))))))--))))	GGAAGAGAUAGAAAAAGAGGAAGA&UCUUCU-AUUUUUCUAUU--UUCC	2	0.99751887635167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5226_c1_g2_4063_TPlot.pdf
TRINITY_DN5226_c1_g2:4064	si_a785	TRINITY_DN5226_c1_g2	4053	4074	4064	-25.90	-17.60	0.67953667953668	8	2-7,4073-4068;9-20,4065-4054	1-1,4074-4074[UP5];8-8,4067-4066[AILt];21-21,4053-4053[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	AGAGAUAGAAAAAGAGGAAGAA&CUCUUCU-AUUUUUCUAUUUUC	4	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5226_c1_g2_4064_TPlot.pdf
TRINITY_DN5226_c1_g2:4065	si_a784	TRINITY_DN5226_c1_g2	4054	4075	4065	-24.70	-17.40	0.704453441295547	9	3-8,4073-4068;10-21,4065-4054	1-2,4075-4074[UP5];9-9,4067-4066[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GAGAUAGAAAAAGAGGAAGAAC&ACUCUUCU-AUUUUUCUAUUUU	2	0.999987793589446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5226_c1_g2_4065_TPlot.pdf
TRINITY_DN5226_c1_g2:4075	si_s82	TRINITY_DN5226_c1_g2	4064	4086	4075	-28.90	-19.68	0.680968858131488	8.5	1-8,4086-4079;11-21,4074-4064	9-10,4078-4075[AILt]	(((((((((((....((((((((&))))))))--..)))))))))))	AAGAGGAAGAACAUAGAAAGAAA&UUUCUUUC--CUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5226_c1_g2_4075_TPlot.pdf
TRINITY_DN5226_c1_g2:4076	si_s81	TRINITY_DN5226_c1_g2	4065	4087	4076	-28.90	-18.98	0.656747404844291	9.5	2-9,4086-4079;12-21,4074-4065	1-1,4087-4087[UP5];10-11,4078-4075[AILt]	((((((((((....((((((((.&.))))))))--..))))))))))	AGAGGAAGAACAUAGAAAGAAAG&UUUUCUUUC--CUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN5226_c1_g2_4076_TPlot.pdf
TRINITY_DN5226_c1_g2:4093	si_s76	TRINITY_DN5226_c1_g2	4081	4102	4093	-23.60	-15.40	0.652542372881356	6	2-12,4101-4091;14-14,4089-4089;15-21,4087-4081	1-1,4102-4102[UP5];13-13,4090-4090[SIL];x-x,4088-4088[BULt]	(((((((.(.(((((((((((.&.))))))))))).)-)))))))	AAGAAAGAGCAAGAGAAAGAGG&AUUUUUUUUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5226_c1_g2_4093_TPlot.pdf
TRINITY_DN5226_c1_g2:4118	si_s93	TRINITY_DN5226_c1_g2	4104	4127	4118	-34.80	-23.50	0.675287356321839	9	1-11,4127-4117;12-15,4114-4111;16-18,4109-4107	x-x,4116-4115[BULt];x-x,4110-4110[BULt];19-21,4106-4104[UP3]	...(((.((((..(((((((((((&)))))))))))--))))-)))...	ACACCGUAAGCAAGAAGAAGAGGA&UCUUCUUCUUC--GCUU-CGGAUU	2	0.999992005192978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5226_c1_g2_4118_TPlot.pdf
TRINITY_DN5226_c1_g2:4119	si_s92	TRINITY_DN5226_c1_g2	4105	4128	4119	-34.90	-24.20	0.693409742120344	8	1-12,4128-4117;13-16,4114-4111;17-19,4109-4107	x-x,4116-4115[BULt];x-x,4110-4110[BULt];20-21,4106-4105[UP3]	..(((.((((..((((((((((((&))))))))))))--))))-)))..	CACCGUAAGCAAGAAGAAGAGGAA&UUCUUCUUCUUC--GCUU-CGGAU	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5226_c1_g2_4119_TPlot.pdf
TRINITY_DN5226_c1_g2:4120	si_s91	TRINITY_DN5226_c1_g2	4106	4129	4120	-34.70	-24.40	0.703170028818444	6	2-13,4128-4117;14-17,4114-4111;18-20,4109-4107	1-1,4129-4129[UP5];x-x,4116-4115[BULt];x-x,4110-4110[BULt];21-21,4106-4106[UP3]	.(((.((((..((((((((((((.&.))))))))))))--))))-))).	ACCGUAAGCAAGAAGAAGAGGAAU&UUUCUUCUUCUUC--GCUU-CGGA	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5226_c1_g2_4120_TPlot.pdf
TRINITY_DN5226_c1_g2:4239	si_a785	TRINITY_DN5226_c1_g2	4228	4248	4239	-25.90	-18.00	0.694980694980695	7.5	1-7,4248-4242;9-17,4240-4232	8-8,4241-4241[SIL];18-21,4231-4228[UP3]	....(((((((((.(((((((&))))))).)))))))))....	CUUCGUAGAAAAGAAGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.99999999983269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5226_c1_g2_4239_TPlot.pdf
TRINITY_DN5226_c1_g2:4240	si_a784	TRINITY_DN5226_c1_g2	4229	4249	4240	-24.70	-18.20	0.736842105263158	7.5	2-8,4248-4242;10-18,4240-4232	1-1,4249-4249[UP5];9-9,4241-4241[SIL];19-21,4231-4229[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	UUCGUAGAAAAGAAGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5226_c1_g2_4240_TPlot.pdf
TRINITY_DN5226_c1_g2:4241	si_a783	TRINITY_DN5226_c1_g2	4230	4250	4241	-24.70	-18.20	0.736842105263158	8.5	3-9,4248-4242;11-19,4240-4232	1-2,4250-4249[UP5];10-10,4241-4241[SIL];20-21,4231-4230[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	UCGUAGAAAAGAAGAAGAGGC&AACUCUUCUAUUUUUCUAUUU	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5226_c1_g2_4241_TPlot.pdf
TRINITY_DN5226_c1_g2:4242	si_a782	TRINITY_DN5226_c1_g2	4231	4251	4242	-26.40	-18.20	0.689393939393939	9.5	4-10,4248-4242;12-20,4240-4232	1-3,4251-4249[UP5];11-11,4241-4241[SIL];21-21,4231-4231[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	CGUAGAAAAGAAGAAGAGGCA&CAACUCUUCUAUUUUUCUAUU	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN5226_c1_g2_4242_TPlot.pdf
TRINITY_DN5226_c1_g2:4243	si_a781	TRINITY_DN5226_c1_g2	4232	4252	4243	-27.40	-18.20	0.664233576642336	10	5-11,4248-4242;13-21,4240-4232	1-4,4252-4249[UP5];12-12,4241-4241[SIL]	(((((((((.(((((((....&....))))))).)))))))))	GUAGAAAAGAAGAAGAGGCAG&UCAACUCUUCUAUUUUUCUAU	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN5226_c1_g2_4243_TPlot.pdf
TRINITY_DN5226_c1_g2:4246	si_s88	TRINITY_DN5226_c1_g2	4235	4256	4246	-34.80	-23.80	0.683908045977012	6	1-6,4256-4251;7-16,4249-4240;19-21,4237-4235	x-x,4250-4250[BULt];17-18,4239-4238[SIL]	(((..((((((((((.((((((&))))))-))))))))))..)))	GAAAAGAAGAAGAGGCAGAGGA&UCCUUU-CUUCUUCUUCGCUUC	2	0.999999732599147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5226_c1_g2_4246_TPlot.pdf
TRINITY_DN5226_c1_g2:4247	si_s87	TRINITY_DN5226_c1_g2	4236	4257	4247	-32.90	-22.50	0.683890577507599	8	1-7,4257-4251;8-17,4249-4240	x-x,4250-4250[BULt];18-21,4239-4236[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	AAAAGAAGAAGAGGCAGAGGAA&UUCCUUU-CUUCUUCUUCGCUU	2	0.999999999384285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5226_c1_g2_4247_TPlot.pdf
TRINITY_DN5226_c1_g2:4248	si_s86	TRINITY_DN5226_c1_g2	4237	4258	4248	-32.90	-22.70	0.689969604863222	8	2-8,4257-4251;9-18,4249-4240	1-1,4258-4258[UP5];x-x,4250-4250[BULt];19-21,4239-4237[UP3]	...((((((((((.(((((((.&.)))))))-))))))))))...	AAAGAAGAAGAGGCAGAGGAAU&UUUCCUUU-CUUCUUCUUCGCU	2	0.999999993608914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5226_c1_g2_4248_TPlot.pdf
TRINITY_DN5226_c1_g2:4249	si_s85	TRINITY_DN5226_c1_g2	4238	4259	4249	-33.80	-22.70	0.671597633136095	9	3-9,4257-4251;10-19,4249-4240	1-2,4259-4258[UP5];x-x,4250-4250[BULt];20-21,4239-4238[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	AAGAAGAAGAGGCAGAGGAAUU&CUUUCCUUU-CUUCUUCUUCGC	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5226_c1_g2_4249_TPlot.pdf
TRINITY_DN5226_c1_g2:4251	si_s84	TRINITY_DN5226_c1_g2	4239	4261	4251	-32.30	-22.90	0.708978328173375	9	1-2,4261-4260;4-10,4257-4251;11-20,4249-4240	3-3,4259-4258[AILt];x-x,4250-4250[BULt];21-21,4239-4239[UP3]	.((((((((((.(((((((..((&))-.)))))))-)))))))))).	AGAAGAAGAGGCAGAGGAAUUGA&UC-UUUCCUUU-CUUCUUCUUCG	2	0.999996654681886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5226_c1_g2_4251_TPlot.pdf
TRINITY_DN5226_c1_g2:4252	si_s83	TRINITY_DN5226_c1_g2	4240	4262	4252	-30.90	-23.40	0.757281553398058	7.5	1-3,4262-4260;5-11,4257-4251;12-21,4249-4240	4-4,4259-4258[AILt];x-x,4250-4250[BULt]	((((((((((.(((((((..(((&)))-.)))))))-))))))))))	GAAGAAGAGGCAGAGGAAUUGAA&UUC-UUUCCUUU-CUUCUUCUUC	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5226_c1_g2_4252_TPlot.pdf
TRINITY_DN5226_c1_g2:4253	si_s82	TRINITY_DN5226_c1_g2	4241	4263	4253	-28.90	-21.10	0.730103806228374	7.5	1-4,4263-4260;6-12,4257-4251;13-21,4249-4241	5-5,4259-4258[AILt];x-x,4250-4250[BULt]	(((((((((.(((((((..((((&))))-.)))))))-)))))))))	AAGAAGAGGCAGAGGAAUUGAAA&UUUC-UUUCCUUU-CUUCUUCUU	3	0.999999999997568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5226_c1_g2_4253_TPlot.pdf
TRINITY_DN5226_c1_g2:4256	si_s79	TRINITY_DN5226_c1_g2	4244	4266	4256	-26.20	-17.70	0.675572519083969	7	2-7,4265-4260;9-15,4257-4251;16-21,4249-4244	1-1,4266-4266[UP5];8-8,4259-4258[AILt];x-x,4250-4250[BULt]	((((((.(((((((..((((((.&.))))))-.)))))))-))))))	AAGAGGCAGAGGAAUUGAAAAAG&UUUUUUC-UUUCCUUU-CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5226_c1_g2_4256_TPlot.pdf
TRINITY_DN5226_c1_g2:4257	si_s78	TRINITY_DN5226_c1_g2	4245	4267	4257	-26.20	-18.50	0.706106870229008	7	1-8,4267-4260;10-16,4257-4251;17-21,4249-4245	9-9,4259-4258[AILt];x-x,4250-4250[BULt]	(((((.(((((((..((((((((&))))))))-.)))))))-)))))	AGAGGCAGAGGAAUUGAAAAAGA&UUUUUUUC-UUUCCUUU-CUUCU	2	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5226_c1_g2_4257_TPlot.pdf
TRINITY_DN5226_c1_g2:4258	si_s77	TRINITY_DN5226_c1_g2	4246	4268	4258	-25.50	-18.10	0.709803921568627	7	1-9,4268-4260;11-17,4257-4251;18-21,4249-4246	10-10,4259-4258[AILt];x-x,4250-4250[BULt]	((((.(((((((..(((((((((&)))))))))-.)))))))-))))	GAGGCAGAGGAAUUGAAAAAGAA&UUUUUUUUC-UUUCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5226_c1_g2_4258_TPlot.pdf
TRINITY_DN5226_c1_g2:4265	si_s71	TRINITY_DN5226_c1_g2	4253	4273	4265	-25.70	-16.80	0.653696498054475	6	1-5,4273-4269;7-15,4268-4260;17-21,4257-4253	6-6,x-x[BULq];16-16,4259-4258[AILt]	(((((..(((((((((-(((((&))))).)))))))))-.)))))	AGGAAUUGAAAAAGAA-AGAGG&CUUCUAUUUUUUUUC-UUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5226_c1_g2_4265_TPlot.pdf
TRINITY_DN5227_c2_g1:169	si_s750	TRINITY_DN5227_c2_g1	158	177	169	-29.90	-19.90	0.665551839464883	6.5	1-8,177-170;11-20,168-159	9-10,169-169[AILq];21-21,158-158[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	AUUGUUGUUUUU-GGUCGAUU&GAUUGACCUUAAAACAACAAC	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s750_TRINITY_DN5227_c2_g1_169_TPlot.pdf
TRINITY_DN5229_c0_g1:1398	si_a410	TRINITY_DN5229_c0_g1	1385	1407	1398	-17.80	-11.90	0.668539325842697	9	2-14,1406-1394;15-19,1391-1387	1-1,1407-1407[UP5];x-x,1393-1392[BULt];20-21,1386-1385[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	GAUGUUUACGAAUGUGAGCAAAU&UUUUGUUUAUAUUU--AAAUAAA	3	0.999999999999758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5229_c0_g1_1398_TPlot.pdf
TRINITY_DN5229_c0_g1:25	si_s181	TRINITY_DN5229_c0_g1	14	34	25	-34.60	-22.90	0.661849710982659	8.5	2-7,33-28;9-16,26-19	1-1,34-34[UP5];8-8,27-27[SIL];17-21,18-14[UP3]	.....((((((((.((((((.&.)))))).)))))))).....	CUCCUUUGUUACUGGGGCAUG&GAUGCCCGAGUAACGAUUAUU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN5229_c0_g1_25_TPlot.pdf
TRINITY_DN522_c0_g1:618	si_a674	TRINITY_DN522_c0_g1	607	628	618	-34.70	-25.40	0.731988472622478	7	1-2,628-627;3-9,625-619;11-21,617-607	x-x,626-626[BULt];10-10,618-618[SIL]	(((((((((((.(((((((.((&))-))))))).)))))))))))	GACUGCGUGGAAAAGGAGUACA&UG-AUUCCUUAUUCACGCGGUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a674_TRINITY_DN522_c0_g1_618_TPlot.pdf
TRINITY_DN522_c0_g1:620	si_a672	TRINITY_DN522_c0_g1	609	630	620	-34.10	-23.20	0.680351906158358	9	3-4,628-627;5-11,625-619;13-21,617-609	1-2,630-629[UP5];x-x,626-626[BULt];12-12,618-618[SIL]	(((((((((.(((((((.((..&..))-))))))).)))))))))	CUGCGUGGAAAAGGAGUACAUA&AUUG-AUUCCUUAUUCACGCGG	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a672_TRINITY_DN522_c0_g1_620_TPlot.pdf
TRINITY_DN5231_c0_g1:557	si_s74	TRINITY_DN5231_c0_g1	545	566	557	-25.00	-17.20	0.688	9	1-8,566-559;11-14,556-553;16-21,550-545	9-10,558-557[SIL];15-15,552-551[AILt]	((((((..((((..((((((((&))))))))..))))-.))))))	GAGAGGUUGAGAUUGAAAAUGG&CUAUUUUUUUUCUU-UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5231_c0_g1_557_TPlot.pdf
TRINITY_DN5232_c0_g1:3046	si_a784	TRINITY_DN5232_c0_g1	3035	3058	3046	-24.70	-16.40	0.663967611336032	10	3-9,3056-3050;10-21,3046-3035	1-2,3058-3057[UP5];x-x,3049-3047[BULt]	((((((((((((...(((((((..&..)))))))---))))))))))))	AGAAUGGAAAAAAAUUAGAAGAUA&ACUCUUCUA---UUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5232_c0_g1_3046_TPlot.pdf
TRINITY_DN5232_c0_g1:3048	si_s69	TRINITY_DN5232_c0_g1	3036	3057	3048	-23.40	-15.60	0.666666666666667	6.5	3-8,3055-3050;10-18,3048-3040;19-21,3038-3036	1-2,3057-3056[UP5];9-9,3049-3049[SIL];x-x,3039-3039[BULt]	(((.(((((((((.((((((..&..)))))).)))))))))-)))	GAAUGGAAAAAAAUUAGAAGAU&AACUUCUAUUUUUUUUCU-UUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5232_c0_g1_3048_TPlot.pdf
TRINITY_DN5232_c0_g1:3859	si_s5	TRINITY_DN5232_c0_g1	3848	3871	3859	-21.70	-14.34	0.660829493087558	13	1-9,3871-3863;11-20,3858-3849	10-10,3862-3859[AILt];21-21,3848-3848[UP3]	.((((((((((....(((((((((&)))))))))---.)))))))))).	CUAGUAGUAGUUUGCGGUAAUGUG&UAUAUUACU---UAUUAUUACUAU	4	0.999996457062207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN5232_c0_g1_3859_TPlot.pdf
TRINITY_DN5232_c0_g4:3232	si_s441	TRINITY_DN5232_c0_g4	3221	3240	3232	-23.20	-15.10	0.650862068965517	7.5	2-5,3239-3236;7-20,3235-3222	1-1,3240-3240[UP5];6-6,x-x[BULq];21-21,3221-3221[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	AUUGUUGUAUAUGGU-UGUGG&UUACAUAUUAUAUAUAACAAC	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN5232_c0_g4_3232_TPlot.pdf
TRINITY_DN52347_c0_g1:119	si_s493	TRINITY_DN52347_c0_g1	108	128	119	-19.80	-12.90	0.651515151515151	9	4-14,125-115;17-20,112-109	1-3,128-126[UP5];15-16,114-113[SIL];21-21,108-108[UP3]	.((((..(((((((((((...&...)))))))))))..)))).	CUGUUGAGUUUAUGUUUAUGC&AUUUAAAUAUAAACAAAACAA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN52347_c0_g1_119_TPlot.pdf
TRINITY_DN5234_c0_g1:2485	si_a359	TRINITY_DN5234_c0_g1	2474	2494	2485	-29.20	-19.70	0.674657534246575	11	6-21,2489-2474	1-5,2494-2490[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUGGUCUGAUCAGAAUCCACA&AUUCUAUUUUGAUCGGAUCAA	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN5234_c0_g1_2485_TPlot.pdf
TRINITY_DN5234_c0_g1:3790	si_s792	TRINITY_DN5234_c0_g1	3779	3799	3790	-28.50	-19.30	0.67719298245614	13.5	7-21,3793-3779	1-6,3799-3794[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAUGAGAUGCGAGAAACGG&AACAAGCUCGUAUUUUAUCUU	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN5234_c0_g1_3790_TPlot.pdf
TRINITY_DN5234_c0_g2:2031	si_a488	TRINITY_DN5234_c0_g2	2019	2040	2031	-26.40	-19.30	0.731060606060606	6.5	2-7,2039-2034;9-14,2032-2027;15-21,2025-2019	1-1,2040-2040[UP5];8-8,2033-2033[SIL];x-x,2026-2026[BULt]	(((((((.((((((.((((((.&.)))))).))))))-)))))))	GAGAAACGGACAUGAUCUGUAA&AUAUAGAAUAUGUC-GUUUUUC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN5234_c0_g2_2031_TPlot.pdf
TRINITY_DN5234_c0_g2:766	si_s75	TRINITY_DN5234_c0_g2	754	775	766	-24.00	-16.40	0.683333333333333	6	1-10,775-766;12-21,763-754	11-11,765-764[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	AGAAAGGGAACAAAAAAGAAUG&UAUUUUUUUU-CUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5234_c0_g2_766_TPlot.pdf
TRINITY_DN5236_c0_g1:235	si_s598	TRINITY_DN5236_c0_g1	223	244	235	-28.20	-19.20	0.680851063829787	7	1-11,244-234;13-21,231-223	12-12,233-232[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AGAGGGGUUAAGUUUGGAUUUA&UAAAUCCAAGC-GAAUCUUUUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN5236_c0_g1_235_TPlot.pdf
TRINITY_DN5238_c0_g4:641	si_a175	TRINITY_DN5238_c0_g4	631	651	641	-33.40	-22.10	0.661676646706587	7.5	1-4,651-648;5-5,646-646;7-13,644-638;16-21,636-631	x-x,647-647[BULt];6-6,645-645[SIL];14-15,637-637[AILq]	((((((.-(((((((.(.((((&))))-).)))))))..))))))	GAGGUGG-AUCUAGAGGUGGUG&CACC-CGUCUAGAUAAUAUCUU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN5238_c0_g4_641_TPlot.pdf
TRINITY_DN5240_c0_g1:923	si_s667	TRINITY_DN5240_c0_g1	908	932	923	-28.90	-19.20	0.664359861591695	13	1-10,932-923;11-20,918-909	x-x,922-919[BULt];21-21,908-908[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	AUUCUAUGGUUUCUGAAUUUGGUCC&GGAUCGAAUU----GAUUAUAGAAA	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN5240_c0_g1_923_TPlot.pdf
TRINITY_DN5241_c0_g3:287	si_s717	TRINITY_DN5241_c0_g3	276	298	287	-30.10	-20.68	0.687043189368771	11	1-8,298-291;11-20,286-277	9-10,290-287[AILt];21-21,276-276[UP3]	.((((((((((....((((((((&))))))))--..)))))))))).	CAGAUGAUGUCGUUCUCCUUGUU&AACAGGGA--AAGAUAUUAUCUA	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN5241_c0_g3_287_TPlot.pdf
TRINITY_DN5241_c0_g3:324	si_a77	TRINITY_DN5241_c0_g3	313	333	324	-22.20	-15.10	0.68018018018018	9.5	4-17,330-317;20-20,314-314	1-3,333-331[UP5];18-19,316-315[SIL];21-21,313-313[UP3]	.(..((((((((((((((...&...))))))))))))))..).	CCGGAGUGGUGAAAAACAGAU&AAUUGUUUUUCAUUAUUAAGA	4	0.99999660035318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN5241_c0_g3_324_TPlot.pdf
TRINITY_DN5241_c1_g1:400	si_s73	TRINITY_DN5241_c1_g1	389	408	400	-24.00	-16.10	0.670833333333333	9	2-6,407-403;9-21,401-389	1-1,408-408[UP5];7-8,402-402[AILq]	(((((((((((((.-(((((.&.)))))..)))))))))))))	AGGGGGGAGAAAAU-GAUGGU&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5241_c1_g1_400_TPlot.pdf
TRINITY_DN5246_c0_g1:22	si_a66	TRINITY_DN5246_c0_g1	11	34	22	-26.70	-17.60	0.659176029962547	10	1-5,34-30;6-8,28-26;9-20,23-12	x-x,29-29[BULt];x-x,25-24[BULt];21-21,11-11[UP3]	.((((((((((((..(((.(((((&)))))-)))--)))))))))))).	CAGAACAGUUUGAGUGAGAAAGUG&CGCUU-CUU--UCAAAUUGUUUUU	2	0.999999995078885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5246_c0_g1_22_TPlot.pdf
TRINITY_DN52481_c0_g1:154	si_a287	TRINITY_DN52481_c0_g1	143	163	154	-29.20	-19.20	0.657534246575342	10.5	1-14,163-150	15-21,149-143[UP3]	.......((((((((((((((&)))))))))))))).......	AAUAUGAAGGUUCAGGCGAUC&GAUCGCUUGGAUUUAAAAAAG	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN52481_c0_g1_154_TPlot.pdf
TRINITY_DN524_c0_g1:269	si_s70	TRINITY_DN524_c0_g1	258	277	269	-25.80	-16.92	0.655813953488372	13	2-8,276-270;13-21,266-258	1-1,277-277[UP5];9-12,269-267[AILq]	(((((((((...-(((((((.&.)))))))....)))))))))	GGAAAGGAGUCU-GUAGGGGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN524_c0_g1_269_TPlot.pdf
TRINITY_DN524_c0_g1:653	si_s74	TRINITY_DN524_c0_g1	642	662	653	-25.00	-18.40	0.736	8.5	4-20,659-643	1-3,662-660[UP5];21-21,642-642[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAAGGAGAGAAGGAAAAACG&CUAUUUUUUUUCUUUCCUUUC	4	0.999999988356151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN524_c0_g1_653_TPlot.pdf
TRINITY_DN524_c0_g1:655	si_s72	TRINITY_DN524_c0_g1	644	664	655	-24.10	-17.50	0.726141078838174	11.5	6-21,659-644	1-5,664-660[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAGAGAAGGAAAAACGCA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999966543637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN524_c0_g1_655_TPlot.pdf
TRINITY_DN5250_c0_g2:2351	si_s79	TRINITY_DN5250_c0_g2	2339	2360	2351	-26.20	-19.30	0.736641221374046	10.5	4-16,2357-2345;17-21,2343-2339	1-3,2360-2358[UP5];x-x,2344-2344[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	AGGAGUGGAAGGAGAGAGGCGU&UUUUUUCUUUCCUUUC-UUCUU	2	0.999999996736461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5250_c0_g2_2351_TPlot.pdf
TRINITY_DN5250_c0_g2:6317	si_s372	TRINITY_DN5250_c0_g2	6304	6326	6317	-45.70	-29.90	0.654266958424508	7.5	1-11,6326-6316;13-15,6313-6311;16-19,6309-6306	12-12,6315-6314[AILt];x-x,6310-6310[BULt];20-21,6305-6304[UP3]	..((((.(((..(((((((((((&)))))))))))-.)))-))))..	GAGGACGAUGAGGAGCGAUCGGU&ACCGAUCGCUC-GCGU-GUCCGC	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN5250_c0_g2_6317_TPlot.pdf
TRINITY_DN52519_c0_g1:97	si_a194	TRINITY_DN52519_c0_g1	86	106	97	-29.40	-24.80	0.843537414965986	7	1-15,106-92	16-21,91-86[UP3]	......(((((((((((((((&)))))))))))))))......	UGGCCGUAGUGAACAGGGAGA&UUUCCCUGUUCACUAAUAAAU	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN52519_c0_g1_97_TPlot.pdf
TRINITY_DN5251_c0_g1:422	si_s219	TRINITY_DN5251_c0_g1	411	431	422	-33.80	-23.60	0.698224852071006	9.5	2-16,430-416	1-1,431-431[UP5];17-21,415-411[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GCAAACGCGCGGUUUUGGAUG&UGUUCGAAACCGCGUGAAUAA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN5251_c0_g1_422_TPlot.pdf
TRINITY_DN5252_c0_g1:1327	si_s317	TRINITY_DN5252_c0_g1	1316	1336	1327	-33.10	-22.00	0.664652567975831	10	4-18,1333-1319;20-21,1317-1316	1-3,1336-1334[UP5];19-19,1318-1318[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GUGUGUGAUGAGAGGGGCUCC&UCUGUCCUUCUUGUUACAAAC	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN5252_c0_g1_1327_TPlot.pdf
TRINITY_DN5252_c0_g1:1486	si_s49	TRINITY_DN5252_c0_g1	1474	1495	1486	-29.30	-19.40	0.662116040955631	9.5	4-6,1492-1490;8-19,1488-1477;20-21,1475-1474	1-3,1495-1493[UP5];7-7,1489-1489[SIL];x-x,1476-1476[BULt]	((.((((((((((((.(((...&...))).))))))))))))-))	UGACUGACUUGAAGUGCAAAUU&UAAUUGGAUUUCAAGUUAG-CA	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN5252_c0_g1_1486_TPlot.pdf
TRINITY_DN5252_c0_g1:1488	si_s47	TRINITY_DN5252_c0_g1	1477	1497	1488	-26.30	-18.70	0.711026615969582	12.5	6-8,1492-1490;10-21,1488-1477	1-5,1497-1493[UP5];9-9,1489-1489[SIL]	((((((((((((.(((.....&.....))).))))))))))))	CUGACUUGAAGUGCAAAUUUA&AAUAAUUGGAUUUCAAGUUAG	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN5252_c0_g1_1488_TPlot.pdf
TRINITY_DN5253_c0_g1:2551	si_s816	TRINITY_DN5253_c0_g1	2540	2560	2551	-24.90	-16.70	0.670682730923695	6	1-11,2560-2550;14-18,2547-2543	12-13,2549-2548[SIL];19-21,2542-2540[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	UCACAUUAAAAAGAAAAGGUA&UACCUUUUCUUAAUAAUGAAA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN5253_c0_g1_2551_TPlot.pdf
TRINITY_DN5253_c0_g1:2552	si_s815	TRINITY_DN5253_c0_g1	2541	2561	2552	-25.00	-16.80	0.672	5	2-12,2560-2550;15-19,2547-2543	1-1,2561-2561[UP5];13-14,2549-2548[SIL];20-21,2542-2541[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	CACAUUAAAAAGAAAAGGUAC&UUACCUUUUCUUAAUAAUGAA	2	0.935310264859161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN5253_c0_g1_2552_TPlot.pdf
TRINITY_DN52548_c0_g1:107	si_s90	TRINITY_DN52548_c0_g1	96	116	107	-35.30	-23.10	0.654390934844193	6	2-18,115-99	1-1,116-116[UP5];19-21,98-96[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AUUAGGUGAAGAAGAAGAAGA&CUUUCUUCUUCUUCGCUUCGG	2	0.999999999955449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN52548_c0_g1_107_TPlot.pdf
TRINITY_DN5254_c0_g1:1072	si_s440	TRINITY_DN5254_c0_g1	1061	1081	1072	-21.60	-15.60	0.722222222222222	6	1-16,1081-1066	17-21,1065-1061[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUAAAUAUGUAAUAUGUAAU&AUUACAUAUUAUAUAUAACAA	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN5254_c0_g1_1072_TPlot.pdf
TRINITY_DN5254_c0_g1:1081	si_s431	TRINITY_DN5254_c0_g1	1070	1090	1081	-21.10	-14.90	0.706161137440758	9.5	6-21,1085-1070	1-5,1090-1086[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUAAUAUGUAAUUAUUUCUGA&AUAACAAUAAUUACAUAUUAU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN5254_c0_g1_1081_TPlot.pdf
TRINITY_DN5254_c0_g1:175	si_s104	TRINITY_DN5254_c0_g1	164	186	175	-32.70	-25.40	0.776758409785933	7	1-9,186-178;10-19,175-166	x-x,177-176[BULt];20-21,165-164[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	AACUAUUUUCCAUUAUCUGAAGC&GCUUCGGAU--UGGAAAAUAGAA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN5254_c0_g1_175_TPlot.pdf
TRINITY_DN5254_c0_g1:242	si_a718	TRINITY_DN5254_c0_g1	231	251	242	-32.60	-22.20	0.680981595092024	15	7-19,245-233	1-6,251-246[UP5];20-21,232-231[UP3]	..(((((((((((((......&......)))))))))))))..	AAGCUCGGGUGACGAAUGGAA&AAAUAAUCGUUACUCGGGCAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN5254_c0_g1_242_TPlot.pdf
TRINITY_DN5255_c2_g1:331	si_s87	TRINITY_DN5255_c2_g1	320	342	331	-32.90	-24.00	0.729483282674772	9.5	2-6,341-337;7-17,334-324;19-21,322-320	1-1,342-342[UP5];x-x,336-335[BULt];18-18,323-323[SIL]	(((.(((((((((((..(((((.&.)))))--))))))))))).)))	GAGGGAAGAAGAGGGCCAGGGAG&UUCCUU--UCUUCUUCUUCGCUU	4	0.999997928537389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5255_c2_g1_331_TPlot.pdf
TRINITY_DN5257_c0_g1:1854	si_a500	TRINITY_DN5257_c0_g1	1842	1867	1854	-34.40	-23.80	0.691860465116279	12	1-6,1867-1862;7-17,1857-1847;19-21,1844-1842	x-x,1861-1858[BULt];18-18,1846-1845[AILt]	(((..(((((((((((....((((((&))))))----)))))))))))-.)))	UCCUUAGGAAGACGAAACUUGAAUGA&UCGUUU----UUCGUCUUCCU-UGGA	4	0.999934925752249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN5257_c0_g1_1854_TPlot.pdf
TRINITY_DN525_c0_g1:10147	si_a494	TRINITY_DN525_c0_g1	10136	10156	10147	-29.50	-19.50	0.661016949152542	13.5	5-5,10152-10152;7-8,10150-10149;10-21,10147-10136	1-4,10156-10153[UP5];6-6,10151-10151[SIL];9-9,10148-10148[SIL]	((((((((((((.((.(....&....).)).))))))))))))	GGAGACGAAGAAGGAGGCCCC&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999999617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN525_c0_g1_10147_TPlot.pdf
TRINITY_DN525_c0_g1:10999	si_a785	TRINITY_DN525_c0_g1	10988	11010	10999	-25.90	-19.90	0.768339768339768	8.5	1-8,11010-11003;9-20,11000-10989	x-x,11002-11001[BULt];21-21,10988-10988[UP3]	.((((((((((((..((((((((&))))))))--)))))))))))).	AGAGAUGGAAAGACUUGGAAGAG&CUCUUCUA--UUUUUCUAUUUUC	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN525_c0_g1_10999_TPlot.pdf
TRINITY_DN525_c0_g1:11000	si_a784	TRINITY_DN525_c0_g1	10989	11011	11000	-24.70	-19.70	0.797570850202429	8.5	2-9,11010-11003;10-21,11000-10989	1-1,11011-11011[UP5];x-x,11002-11001[BULt]	((((((((((((..((((((((.&.))))))))--))))))))))))	GAGAUGGAAAGACUUGGAAGAGA&ACUCUUCUA--UUUUUCUAUUUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN525_c0_g1_11000_TPlot.pdf
TRINITY_DN525_c0_g1:4231	si_a287	TRINITY_DN525_c0_g1	4220	4240	4231	-29.20	-19.40	0.664383561643836	12	1-11,4240-4230	12-21,4229-4220[UP3]	..........(((((((((((&)))))))))))..........	GCCGAGCUCUUCCGAGCGAUC&GAUCGCUUGGAUUUAAAAAAG	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN525_c0_g1_4231_TPlot.pdf
TRINITY_DN525_c0_g1:4612	si_a499	TRINITY_DN525_c0_g1	4601	4621	4612	-35.20	-23.92	0.679545454545455	14	1-5,4621-4617;12-21,4610-4601	6-11,4616-4611[SIL]	((((((((((......(((((&)))))......))))))))))	CCAAGGAAGAGUGUAUGCGGC&GUCGUUUUUCGUCUUCCUUGG	3	0.99999994418289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN525_c0_g1_4612_TPlot.pdf
TRINITY_DN525_c0_g1:4820	si_a191	TRINITY_DN525_c0_g1	4808	4830	4820	-32.00	-20.90	0.653125	9.5	1-8,4830-4823;9-15,4821-4815;16-17,4813-4812	x-x,4822-4822[BULt];x-x,4814-4814[BULt];18-21,4811-4808[UP3]	....((.(((((((.((((((((&))))))))-)))))))-))....	UUGCGGCUGAACAGCGGAGAGGU&AUCUUUCC-CUGUUCA-CUAAUA	2	0.99442823870057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN525_c0_g1_4820_TPlot.pdf
TRINITY_DN525_c0_g1:4825	si_a187	TRINITY_DN525_c0_g1	4812	4834	4825	-32.00	-23.30	0.728125	9.5	3-12,4832-4823;13-19,4821-4815;20-21,4813-4812	1-2,4834-4833[UP5];x-x,4822-4822[BULt];x-x,4814-4814[BULt]	((.(((((((.((((((((((..&..))))))))))-)))))))-))	GGCUGAACAGCGGAGAGGUGUAC&UAAUAUCUUUCC-CUGUUCA-CU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN525_c0_g1_4825_TPlot.pdf
TRINITY_DN525_c0_g1:5527	si_a60	TRINITY_DN525_c0_g1	5514	5535	5527	-32.20	-22.10	0.686335403726708	6	1-3,5535-5533;5-14,5532-5523;15-19,5520-5516	4-4,x-x[BULq];x-x,5522-5521[BULt];20-21,5515-5514[UP3]	..(((((..((((((((((-(((&))).))))))))))--)))))..	AUUUUGAACAAGAAGCGAG-CGA&UCGACUCGCUUCUU--UCAAAUU	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN525_c0_g1_5527_TPlot.pdf
TRINITY_DN525_c0_g1:8207	si_s692	TRINITY_DN525_c0_g1	8195	8216	8207	-24.20	-16.30	0.673553719008265	9.5	2-13,8215-8204;14-16,8202-8200	1-1,8216-8216[UP5];x-x,8203-8203[BULt];17-21,8199-8195[UP3]	.....(((.((((((((((((.&.))))))))))))-))).....	CCGACGUCUGACUGAUUGAACA&AGUUUAAUUAGUC-GAUUUAUU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN525_c0_g1_8207_TPlot.pdf
TRINITY_DN5260_c0_g1:3311	si_s807	TRINITY_DN5260_c0_g1	3294	3320	3311	-28.90	-18.80	0.650519031141869	14	1-10,3320-3311;11-17,3305-3299;18-20,3297-3295	x-x,3310-3306[BULt];x-x,3298-3298[BULt];21-21,3294-3294[UP3]	.(((.(((((((.....((((((((((&))))))))))-----)))))))-))).	CAAGAAGAAGGUGAAUUGACGAAGAUG&UAUCUUCGUU-----ACCUUUU-CUUA	4	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5260_c0_g1_3311_TPlot.pdf
TRINITY_DN5260_c0_g1:3314	si_s804	TRINITY_DN5260_c0_g1	3298	3323	3314	-27.90	-18.90	0.67741935483871	11	3-13,3321-3311;14-20,3305-3299	1-2,3323-3322[UP5];x-x,3310-3306[BULt];21-21,3298-3298[UP3]	.(((((((.....(((((((((((..&..)))))))))))-----))))))).	AAGAAGGUGAAUUGACGAAGAUGAUA&UUUUAUCUUCGUU-----ACCUUUUC	4	0.999999983799277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5260_c0_g1_3314_TPlot.pdf
TRINITY_DN5264_c0_g1:1840	si_a569	TRINITY_DN5264_c0_g1	1829	1849	1840	-34.20	-25.40	0.742690058479532	8	1-5,1849-1845;7-9,1843-1841;11-20,1839-1830	6-6,1844-1844[SIL];10-10,1840-1840[SIL];21-21,1829-1829[UP3]	.((((((((((.(((.(((((&))))).))).)))))))))).	AACAAGCGUGCAAUUGGCGGG&CCCGUGAAUCGUAUGUUUGUA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN5264_c0_g1_1840_TPlot.pdf
TRINITY_DN5264_c0_g1:1842	si_a567	TRINITY_DN5264_c0_g1	1831	1851	1842	-36.40	-26.20	0.71978021978022	7.5	2-7,1850-1845;9-11,1843-1841;13-21,1839-1831	1-1,1851-1851[UP5];8-8,1844-1844[SIL];12-12,1840-1840[SIL]	(((((((((.(((.((((((.&.)))))).))).)))))))))	CAAGCGUGCAAUUGGCGGGGC&UCCCCGUGAAUCGUAUGUUUG	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a567_TRINITY_DN5264_c0_g1_1842_TPlot.pdf
TRINITY_DN5264_c0_g1:1855	si_a326	TRINITY_DN5264_c0_g1	1844	1865	1855	-26.20	-17.80	0.679389312977099	5.5	1-6,1865-1860;7-13,1858-1852;15-21,1850-1844	x-x,1859-1859[BULt];14-14,1851-1851[SIL]	(((((((.(((((((.((((((&))))))-))))))).)))))))	GGCGGGGCAUAAAAAUAGUCAU&AUGAUU-UUUUUAUUCCUUGUC	2	0.99986516281768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5264_c0_g1_1855_TPlot.pdf
TRINITY_DN5264_c0_g1:2017	si_a633	TRINITY_DN5264_c0_g1	2006	2025	2017	-26.40	-17.30	0.65530303030303	6.5	1-6,2025-2020;8-14,2019-2013;17-21,2010-2006	7-7,x-x[BULq];15-16,2012-2011[SIL]	(((((..(((((((-((((((&)))))).)))))))..)))))	UGCUCUUAAAGAUC-ACAUGA&UUAUGUCGAUUUUUUUGAGUA	2	0.999999851024798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5264_c0_g1_2017_TPlot.pdf
TRINITY_DN5264_c0_g1:446	si_s806	TRINITY_DN5264_c0_g1	436	454	446	-28.60	-20.20	0.706293706293706	6	1-9,454-446;12-21,445-436	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	AAGAGGAGGU--UGAAGAUAA&UUAUCUUCGUUACCUUUUCUU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5264_c0_g1_446_TPlot.pdf
TRINITY_DN5264_c0_g1:547	si_s439	TRINITY_DN5264_c0_g1	536	556	547	-21.50	-14.20	0.66046511627907	13	7-21,550-536	1-6,556-551[UP5]	(((((((((((((((......&......)))))))))))))))	UGUUAUGUGUAAUGUCCACUU&AAUUACAUAUUAUAUAUAACA	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN5264_c0_g1_547_TPlot.pdf
TRINITY_DN5264_c0_g1:96	si_a786	TRINITY_DN5264_c0_g1	85	107	96	-26.60	-20.40	0.766917293233083	6	1-2,107-106;3-6,104-101;7-21,99-85	x-x,105-105[BULt];x-x,100-100[BULt]	(((((((((((((((.((((.((&))-))))-)))))))))))))))	GGGAAGUAGAAGAAUAAGAACGA&UC-UUCU-AUUUUUCUAUUUUCC	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5264_c0_g1_96_TPlot.pdf
TRINITY_DN52656_c0_g1:15	si_s312	TRINITY_DN52656_c0_g1	4	25	15	-29.00	-19.90	0.686206896551724	11.5	4-9,22-17;11-21,14-4	1-3,25-23[UP5];10-10,16-15[AILt]	(((((((((((..((((((...&...))))))-.)))))))))))	UAACGAGAAGGUGUAGAGUGAA&AAAAUUCUG-UCCUUCUUGUUA	3	0.99999963322098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN52656_c0_g1_15_TPlot.pdf
TRINITY_DN5266_c1_g1:386	si_a761	TRINITY_DN5266_c1_g1	374	395	386	-30.10	-21.00	0.697674418604651	9.5	1-12,395-384;14-20,381-375	13-13,383-382[AILt];21-21,374-374[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	CGUUGAUCCCGGGACCCAAGGG&CCUUUGGGUUUU-UGAUUGAUU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN5266_c1_g1_386_TPlot.pdf
TRINITY_DN5266_c1_g1:395	si_a752	TRINITY_DN5266_c1_g1	384	408	395	-34.80	-25.30	0.727011494252874	14.5	3-9,406-400;10-21,395-384	1-2,408-407[UP5];x-x,399-396[BULt]	((((((((((((....(((((((..&..)))))))----))))))))))))	GGGACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN5266_c1_g1_395_TPlot.pdf
TRINITY_DN52670_c0_g1:50	si_a119	TRINITY_DN52670_c0_g1	39	59	50	-30.30	-21.10	0.696369636963696	8.5	3-7,57-53;10-21,50-39	1-2,59-58[UP5];8-9,52-51[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	UGUUGCUAUGAAUAAAGCUAU&CGAGCUUGUUUUAUAGCAAUA	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN52670_c0_g1_50_TPlot.pdf
TRINITY_DN52673_c0_g1:185	si_a486	TRINITY_DN52673_c0_g1	174	194	185	-24.90	-16.50	0.662650602409639	8.5	1-14,194-181;17-19,178-176	15-16,180-179[SIL];20-21,175-174[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN52673_c0_g1_185_TPlot.pdf
TRINITY_DN526_c0_g1:582	si_a897	TRINITY_DN526_c0_g1	569	591	582	-21.20	-14.80	0.69811320754717	7.5	1-13,591-579;14-18,576-572	x-x,578-577[BULt];19-21,571-569[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	CCGGUAUUUGACUUAUUGUUGCU&AGUAAUAAUAAGU--AAUAUAAA	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN526_c0_g1_582_TPlot.pdf
TRINITY_DN526_c0_g1:624	si_s568	TRINITY_DN526_c0_g1	613	633	624	-30.60	-20.80	0.679738562091503	11.5	5-18,629-616	1-4,633-630[UP5];19-21,615-613[UP3]	...((((((((((((((....&....))))))))))))))...	CACUUGUUCCUUGUUCCCUGG&UUUCGGGACAAGGAAUAAAAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN526_c0_g1_624_TPlot.pdf
TRINITY_DN5270_c0_g1:642	si_s627	TRINITY_DN5270_c0_g1	630	651	642	-36.10	-23.80	0.659279778393352	7.5	2-14,650-638;17-21,634-630	1-1,651-651[UP5];15-16,637-635[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	GACGCGAAACGAGAAGAUUGUA&AGCGAUCUUUUCGU-AGGCGUU	2	0.997154840359294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN5270_c0_g1_642_TPlot.pdf
TRINITY_DN5271_c0_g1:2037	si_s68	TRINITY_DN5271_c0_g1	2024	2046	2037	-23.10	-16.38	0.709090909090909	13.5	1-10,2046-2037;13-19,2032-2026	11-12,2036-2033[AILt];20-21,2025-2024[UP3]	..(((((((....((((((((((&))))))))))--..)))))))..	AUGGAAGGAUUAUGUGGAAGUUG&CAACUUCUAU--UUUUUUUCUUU	3	0.999999998783484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5271_c0_g1_2037_TPlot.pdf
TRINITY_DN5271_c0_g1:279	si_a18	TRINITY_DN5271_c0_g1	268	291	279	-26.30	-17.10	0.650190114068441	11.5	1-8,291-284;9-18,280-271	x-x,283-281[BULt];19-21,270-268[UP3]	...((((((((((...((((((((&))))))))---))))))))))...	CAUCUAAAGAUGAACCAUGGGCUU&AAGCCUAU---UUAUUUUUAGUUC	3	0.999999895452642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN5271_c0_g1_279_TPlot.pdf
TRINITY_DN5271_c0_g1:280	si_a17	TRINITY_DN5271_c0_g1	269	292	280	-24.30	-17.40	0.716049382716049	11.5	2-9,291-284;10-19,280-271	1-1,292-292[UP5];x-x,283-281[BULt];20-21,270-269[UP3]	..((((((((((...((((((((.&.))))))))---))))))))))..	AUCUAAAGAUGAACCAUGGGCUUG&AAAGCCUAU---UUAUUUUUAGUU	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN5271_c0_g1_280_TPlot.pdf
TRINITY_DN5271_c0_g1:284	si_a16	TRINITY_DN5271_c0_g1	270	293	284	-26.30	-17.40	0.661596958174905	12.5	3-10,291-284;11-20,280-271	1-2,293-292[UP5];x-x,283-281[BULt];21-21,270-270[UP3]	.((((((((((...((((((((..&..))))))))---)))))))))).	UCUAAAGAUGAACCAUGGGCUUGG&GAAAGCCUAU---UUAUUUUUAGU	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN5271_c0_g1_284_TPlot.pdf
TRINITY_DN5271_c0_g1:285	si_s792	TRINITY_DN5271_c0_g1	274	294	285	-28.50	-19.70	0.691228070175439	8.5	3-11,292-284;14-21,281-274	1-2,294-293[UP5];12-13,283-282[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	AAGAUGAACCAUGGGCUUGGG&AACAAGCUCGUAUUUUAUCUU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN5271_c0_g1_285_TPlot.pdf
TRINITY_DN52724_c0_g1:356	si_a397	TRINITY_DN52724_c0_g1	345	365	356	-24.00	-16.00	0.666666666666667	6.5	1-7,365-359;9-11,357-355;13-21,353-345	8-8,358-358[SIL];12-12,354-354[SIL]	(((((((((.(((.(((((((&))))))).))).)))))))))	GAACGAAACUGUUGUAUAUUU&GAAUAUAGAAUUGUUUUGUUU	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN52724_c0_g1_356_TPlot.pdf
TRINITY_DN5272_c0_g1:400	si_a470	TRINITY_DN5272_c0_g1	389	409	400	-21.30	-13.88	0.651643192488263	10	1-8,409-402;12-19,398-391	9-11,401-399[SIL];20-21,390-389[UP3]	..((((((((...((((((((&))))))))...))))))))..	UUUGGCAAUAUAGGCAUAUUA&UAAUAUGUAAUUAUUGUUAUA	4	0.999999945240273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN5272_c0_g1_400_TPlot.pdf
TRINITY_DN5273_c0_g1:457	si_s198	TRINITY_DN5273_c0_g1	445	466	457	-30.80	-20.10	0.652597402597403	13.5	5-11,462-456;12-19,454-447	1-4,466-463[UP5];x-x,455-455[BULt];20-21,446-445[UP3]	..((((((((.(((((((....&....)))))))-))))))))..	AUGCUGGUACUGUUCCAGCCUU&UAUUUUGGAAU-GUACCAGUUG	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN5273_c0_g1_457_TPlot.pdf
TRINITY_DN52748_c0_g1:286	si_s80	TRINITY_DN52748_c0_g1	274	295	286	-28.20	-20.60	0.730496453900709	8	1-12,295-284;14-20,281-275	13-13,283-282[AILt];21-21,274-274[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	CGAGAAGGCUAGGGAGGAAGAA&UUUUUCUUUCCU-UUCUUCUUC	1	0.300591572275642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN52748_c0_g1_286_TPlot.pdf
TRINITY_DN5275_c0_g1:397	si_a777	TRINITY_DN5275_c0_g1	386	406	397	-27.00	-17.80	0.659259259259259	10.5	4-16,403-391	1-3,406-404[UP5];17-21,390-386[UP3]	.....(((((((((((((...&...))))))))))))).....	AGUGUUAGGAGAGUUGAAAGA&UGAUUCAACUCUUCUAUUUUU	4	0.999983337958052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN5275_c0_g1_397_TPlot.pdf
TRINITY_DN5277_c0_g1:1417	si_s892	TRINITY_DN5277_c0_g1	1406	1427	1417	-29.50	-19.20	0.650847457627119	7.5	1-4,1427-1424;6-8,1422-1420;9-21,1418-1406	5-5,1423-1423[SIL];x-x,1419-1419[BULt]	(((((((((((((.(((.((((&)))).)))-)))))))))))))	GUUGAGGAGGAAGAUCUUUUUG&UAAAUAGG-CUUUCUCUUCAAU	3	0.999999973068369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN5277_c0_g1_1417_TPlot.pdf
TRINITY_DN5278_c0_g1:1694	si_a145	TRINITY_DN5278_c0_g1	1683	1703	1694	-28.10	-19.60	0.697508896797153	5.5	1-16,1703-1688;19-21,1685-1683	17-18,1687-1686[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	ACCAGAAGAUGACAAUGAUUA&UAAUCGUUGUUGUUUUAAGGU	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN5278_c0_g1_1694_TPlot.pdf
TRINITY_DN5278_c0_g1:586	si_s68	TRINITY_DN5278_c0_g1	575	595	586	-23.10	-15.70	0.67965367965368	6	1-9,595-587;11-14,585-582;16-19,580-577	10-10,586-586[SIL];15-15,581-581[SIL];20-21,576-575[UP3]	..((((.((((.(((((((((&))))))))).)))).))))..	AUGGAACAGAAUUAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5278_c0_g1_586_TPlot.pdf
TRINITY_DN5279_c0_g1:1297	si_a637	TRINITY_DN5279_c0_g1	1286	1306	1297	-25.80	-18.80	0.728682170542636	10.5	1-11,1306-1296;13-16,1294-1291	12-12,1295-1295[SIL];17-21,1290-1286[UP3]	.....((((.(((((((((((&))))))))))).)))).....	UUGAGGCUCCGAAGGAUCGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN5279_c0_g1_1297_TPlot.pdf
TRINITY_DN5279_c0_g1:173	si_a681	TRINITY_DN5279_c0_g1	161	182	173	-33.80	-24.90	0.736686390532544	10.5	4-11,179-172;12-20,170-162	1-3,182-180[UP5];x-x,171-171[BULt];21-21,161-161[UP3]	.(((((((((.((((((((...&...))))))))-))))))))).	GGUUCGAGACGCGUGUGGAGUG&UUAUUCACGCG-GUUUCGAACA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN5279_c0_g1_173_TPlot.pdf
TRINITY_DN5279_c0_g1:174	si_a680	TRINITY_DN5279_c0_g1	162	183	174	-34.70	-25.90	0.746397694524496	9.5	1-2,183-182;5-12,179-172;13-21,170-162	3-4,181-180[SIL];x-x,171-171[BULt]	(((((((((.((((((((..((&))..))))))))-)))))))))	GUUCGAGACGCGUGUGGAGUGG&CUUAUUCACGCG-GUUUCGAAC	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a680_TRINITY_DN5279_c0_g1_174_TPlot.pdf
TRINITY_DN527_c0_g1:1646	si_a777	TRINITY_DN527_c0_g1	1635	1655	1646	-27.00	-21.60	0.8	8.5	1-15,1655-1641	16-21,1640-1635[UP3]	......(((((((((((((((&)))))))))))))))......	CACCGAGGAAGAGUUGGGUCA&UGAUUCAACUCUUCUAUUUUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN527_c0_g1_1646_TPlot.pdf
TRINITY_DN527_c0_g1:1647	si_a776	TRINITY_DN527_c0_g1	1636	1656	1647	-27.10	-21.70	0.800738007380074	8.5	2-16,1655-1641	1-1,1656-1656[UP5];17-21,1640-1636[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACCGAGGAAGAGUUGGGUCAC&UUGAUUCAACUCUUCUAUUUU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN527_c0_g1_1647_TPlot.pdf
TRINITY_DN527_c0_g1:1648	si_a775	TRINITY_DN527_c0_g1	1637	1657	1648	-27.20	-21.70	0.797794117647059	9.5	3-17,1655-1641	1-2,1657-1656[UP5];18-21,1640-1637[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCGAGGAAGAGUUGGGUCACA&AUUGAUUCAACUCUUCUAUUU	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN527_c0_g1_1648_TPlot.pdf
TRINITY_DN527_c0_g1:1649	si_a774	TRINITY_DN527_c0_g1	1638	1658	1649	-29.20	-21.70	0.743150684931507	10.5	4-18,1655-1641	1-3,1658-1656[UP5];19-21,1640-1638[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGAGGAAGAGUUGGGUCACAA&GAUUGAUUCAACUCUUCUAUU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN527_c0_g1_1649_TPlot.pdf
TRINITY_DN527_c0_g1:1653	si_a770	TRINITY_DN527_c0_g1	1642	1660	1653	-28.70	-20.30	0.707317073170732	8	2-5,1659-1656;8-21,1655-1642	1-1,1660-1660[UP5];6-7,x-x[BULq]	((((((((((((((--((((.&.))))..))))))))))))))	GAAGAGUUGGGUCA--CAAGU&UUUUGAUUGAUUCAACUCUUC	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN527_c0_g1_1653_TPlot.pdf
TRINITY_DN527_c0_g1:4065	si_s535	TRINITY_DN527_c0_g1	4054	4074	4065	-28.60	-19.50	0.681818181818182	6	2-3,4073-4072;5-9,4070-4066;11-21,4064-4054	1-1,4074-4074[UP5];4-4,4071-4071[SIL];10-10,4065-4065[SIL]	(((((((((((.(((((.((.&.)).))))).)))))))))))	UUUUGAUCGGACCAGAACUGU&UCAUUUUUGAUCCGAUCAAAA	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN527_c0_g1_4065_TPlot.pdf
TRINITY_DN5280_c0_g1:152	si_a351	TRINITY_DN5280_c0_g1	141	162	152	-20.50	-14.20	0.692682926829268	6.5	1-8,162-155;9-16,153-146;18-21,144-141	x-x,154-154[BULt];17-17,145-145[SIL]	((((.((((((((.((((((((&))))))))-)))))))).))))	GUCGUGAUAGAAUAUGGUAUUU&AAAUAUUA-AUUCUAUUUUGAU	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN5280_c0_g1_152_TPlot.pdf
TRINITY_DN52810_c0_g1:156	si_s604	TRINITY_DN52810_c0_g1	145	165	156	-26.80	-18.00	0.671641791044776	8	1-17,165-149	18-21,148-145[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUGCUGGAAAAGGUUUGUUUG&CAAGCGAAUCUUUUUUAAAUC	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s604_TRINITY_DN52810_c0_g1_156_TPlot.pdf
TRINITY_DN52810_c0_g1:157	si_s603	TRINITY_DN52810_c0_g1	146	166	157	-27.20	-20.60	0.757352941176471	7	1-18,166-149	19-21,148-146[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGCUGGAAAAGGUUUGUUUGG&CCAAGCGAAUCUUUUUUAAAU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN52810_c0_g1_157_TPlot.pdf
TRINITY_DN52810_c0_g1:158	si_s602	TRINITY_DN52810_c0_g1	147	167	158	-28.10	-20.60	0.733096085409253	7	2-19,166-149	1-1,167-167[UP5];20-21,148-147[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GCUGGAAAAGGUUUGUUUGGU&UCCAAGCGAAUCUUUUUUAAA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN52810_c0_g1_158_TPlot.pdf
TRINITY_DN52810_c0_g1:159	si_s601	TRINITY_DN52810_c0_g1	148	168	159	-28.30	-20.60	0.72791519434629	8	3-20,166-149	1-2,168-167[UP5];21-21,148-148[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CUGGAAAAGGUUUGUUUGGUU&AUCCAAGCGAAUCUUUUUUAA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN52810_c0_g1_159_TPlot.pdf
TRINITY_DN52810_c0_g1:161	si_s599	TRINITY_DN52810_c0_g1	150	170	161	-27.80	-19.10	0.68705035971223	10.5	5-21,166-150	1-4,170-167[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAAAAGGUUUGUUUGGUUUA&AAAUCCAAGCGAAUCUUUUUU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN52810_c0_g1_161_TPlot.pdf
TRINITY_DN52810_c0_g1:162	si_s598	TRINITY_DN52810_c0_g1	151	170	162	-28.20	-19.70	0.698581560283688	5	1-4,170-167;6-21,166-151	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	GAAAAGGUUUGUUUGG-UUUA&UAAAUCCAAGCGAAUCUUUUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN52810_c0_g1_162_TPlot.pdf
TRINITY_DN52810_c0_g1:163	si_s597	TRINITY_DN52810_c0_g1	152	171	163	-28.40	-19.70	0.693661971830986	4	1-5,171-167;7-21,166-152	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	AAAAGGUUUGUUUGG-UUUAU&AUAAAUCCAAGCGAAUCUUUU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN52810_c0_g1_163_TPlot.pdf
TRINITY_DN52832_c0_g1:183	si_s76	TRINITY_DN52832_c0_g1	166	192	183	-23.60	-15.90	0.673728813559322	17	2-11,191-182;12-20,175-167	1-1,192-192[UP5];x-x,181-176[BULt];21-21,166-166[UP3]	.(((((((((......((((((((((.&.))))))))))------))))))))).	UAGAGAGGGACAAAAAAGAAAAGGAAG&AUUUUUUUUCU------UUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN52832_c0_g1_183_TPlot.pdf
TRINITY_DN5283_c0_g1:1392	si_s80	TRINITY_DN5283_c0_g1	1381	1401	1392	-28.20	-18.80	0.666666666666667	5	1-14,1401-1388;16-18,1387-1385;19-21,1383-1381	15-15,x-x[BULq];x-x,1384-1384[BULt]	(((.(((-((((((((((((((&)))))))))))))).)))-)))	GAAUGAA-AAAGGAGAGAGAGA&UUUUUCUUUCCUUUCUUC-UUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5283_c0_g1_1392_TPlot.pdf
TRINITY_DN5283_c0_g1:1393	si_s79	TRINITY_DN5283_c0_g1	1383	1402	1393	-26.20	-18.50	0.706106870229008	6	1-15,1402-1388;17-19,1387-1385	16-16,x-x[BULq];20-21,1384-1383[UP3]	..(((-(((((((((((((((&))))))))))))))).)))..	AUGAA-AAAGGAGAGAGAGAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5283_c0_g1_1393_TPlot.pdf
TRINITY_DN5283_c0_g1:1394	si_s78	TRINITY_DN5283_c0_g1	1384	1403	1394	-26.20	-19.20	0.732824427480916	5	1-16,1403-1388;18-20,1387-1385	17-17,x-x[BULq];21-21,1384-1384[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	UGAA-AAAGGAGAGAGAGAAA&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5283_c0_g1_1394_TPlot.pdf
TRINITY_DN5283_c0_g1:1396	si_s76	TRINITY_DN5283_c0_g1	1385	1405	1396	-23.60	-18.00	0.76271186440678	9	3-18,1403-1388	1-2,1405-1404[UP5];19-21,1387-1385[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAAAAAGGAGAGAGAGAAAUG&AUUUUUUUUCUUUCCUUUCUU	0	0.505108942423708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5283_c0_g1_1396_TPlot.pdf
TRINITY_DN5283_c0_g1:1398	si_s73	TRINITY_DN5283_c0_g1	1388	1407	1398	-24.00	-20.60	0.858333333333333	5.5	1-11,1407-1397;13-21,1396-1388	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	AAAGGAGAG-AGAGAAAUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5283_c0_g1_1398_TPlot.pdf
TRINITY_DN5283_c0_g1:1399	si_s72	TRINITY_DN5283_c0_g1	1389	1408	1399	-24.10	-19.80	0.821576763485477	5.5	2-12,1407-1397;14-21,1396-1389	1-1,1408-1408[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	AAGGAGAG-AGAGAAAUGGAC&UUCUAUUUUUUUUCUUUCCUU	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5283_c0_g1_1399_TPlot.pdf
TRINITY_DN5283_c0_g1:1400	si_s71	TRINITY_DN5283_c0_g1	1390	1409	1400	-25.70	-18.90	0.735408560311284	7.5	3-13,1407-1397;15-21,1396-1390	1-2,1409-1408[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	AGGAGAG-AGAGAAAUGGACA&CUUCUAUUUUUUUUCUUUCCU	2	0.999979918334748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5283_c0_g1_1400_TPlot.pdf
TRINITY_DN5283_c0_g1:1402	si_a549	TRINITY_DN5283_c0_g1	1391	1411	1402	-29.50	-20.10	0.68135593220339	9.5	5-15,1407-1397;17-21,1395-1391	1-4,1411-1408[UP5];16-16,1396-1396[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GGAGAGAGAGAAAUGGACACC&UCAAUCUAUUUCUUUAUCUCC	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN5283_c0_g1_1402_TPlot.pdf
TRINITY_DN5284_c0_g1:1051	si_a199	TRINITY_DN5284_c0_g1	1040	1061	1051	-30.50	-20.50	0.672131147540984	6.5	1-8,1061-1054;10-19,1051-1042	9-9,1053-1052[AILt];20-21,1041-1040[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	UAUUGAUUUAUUUUGUGAACAG&CUGUUCAC-UAAUAAAUCGACU	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a199_TRINITY_DN5284_c0_g1_1051_TPlot.pdf
TRINITY_DN5284_c0_g1:1052	si_a198	TRINITY_DN5284_c0_g1	1041	1062	1052	-32.20	-22.90	0.711180124223602	5.5	1-9,1062-1054;11-20,1051-1042	10-10,1053-1052[AILt];21-21,1041-1041[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	AUUGAUUUAUUUUGUGAACAGG&CCUGUUCAC-UAAUAAAUCGAC	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a198_TRINITY_DN5284_c0_g1_1052_TPlot.pdf
TRINITY_DN5284_c0_g1:1054	si_a197	TRINITY_DN5284_c0_g1	1042	1063	1054	-32.80	-23.10	0.704268292682927	5.5	2-10,1062-1054;12-21,1051-1042	1-1,1063-1063[UP5];11-11,1053-1052[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	UUGAUUUAUUUUGUGAACAGGC&CCCUGUUCAC-UAAUAAAUCGA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a197_TRINITY_DN5284_c0_g1_1054_TPlot.pdf
TRINITY_DN5284_c0_g1:1055	si_a196	TRINITY_DN5284_c0_g1	1043	1064	1055	-32.80	-21.80	0.664634146341463	7.5	3-11,1062-1054;13-21,1051-1043	1-2,1064-1063[UP5];12-12,1053-1052[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	UGAUUUAUUUUGUGAACAGGCC&UCCCUGUUCAC-UAAUAAAUCG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a196_TRINITY_DN5284_c0_g1_1055_TPlot.pdf
TRINITY_DN5284_c0_g1:1056	si_a195	TRINITY_DN5284_c0_g1	1044	1065	1056	-31.40	-21.10	0.671974522292994	8	4-12,1062-1054;14-21,1051-1044	1-3,1065-1063[UP5];13-13,1053-1052[AILt]	((((((((..(((((((((...&...)))))))))-.))))))))	GAUUUAUUUUGUGAACAGGCCA&UUCCCUGUUCAC-UAAUAAAUC	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a195_TRINITY_DN5284_c0_g1_1056_TPlot.pdf
TRINITY_DN5284_c0_g1:24	si_s79	TRINITY_DN5284_c0_g1	8	33	24	-26.20	-19.10	0.729007633587786	13.5	1-11,33-23;12-21,17-8	x-x,22-18[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	AAGAAGAAGGACAAAGAAAGGGAGAA&UUUUUUCUUUC-----CUUUCUUCUU	2	0.999999999943563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5284_c0_g1_24_TPlot.pdf
TRINITY_DN5284_c0_g1:26	si_s73	TRINITY_DN5284_c0_g1	13	35	26	-24.00	-15.70	0.654166666666667	8.5	1-3,35-33;5-15,31-21;16-21,18-13	4-4,32-32[SIL];x-x,20-19[BULt]	((((((..(((((((((((.(((&))).)))))))))))--))))))	GAAGGACAAAGAAAGGGAGAAGA&UCUAUUUUUUUUCUU--UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5284_c0_g1_26_TPlot.pdf
TRINITY_DN5284_c0_g1:28	si_s71	TRINITY_DN5284_c0_g1	15	37	28	-25.70	-17.50	0.680933852140078	8	1-5,37-33;7-17,31-21;18-21,18-15	6-6,32-32[SIL];x-x,20-19[BULt]	((((..(((((((((((.(((((&))))).)))))))))))--))))	AGGACAAAGAAAGGGAGAAGAAG&CUUCUAUUUUUUUUCUU--UCCU	2	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5284_c0_g1_28_TPlot.pdf
TRINITY_DN5284_c0_g1:29	si_s80	TRINITY_DN5284_c0_g1	10	39	29	-28.20	-18.70	0.663120567375887	21.5	1-7,39-33;8-12,31-27;13-21,18-10	x-x,32-32[BULt];x-x,26-19[BULt]	(((((((((........(((((.(((((((&)))))))-)))))--------)))))))))	GAAGAAGGACAAAGAAAGGGAGAAGAAGAA&UUUUUCU-UUCCU--------UUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5284_c0_g1_29_TPlot.pdf
TRINITY_DN5284_c0_g1:30	si_s77	TRINITY_DN5284_c0_g1	20	39	30	-25.50	-19.00	0.745098039215686	6	1-11,39-29;13-20,28-21	12-12,x-x[BULq];21-21,20-20[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	AAAGAAAGG-GAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	2	0.999999980409248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5284_c0_g1_30_TPlot.pdf
TRINITY_DN5284_c0_g1:33	si_s89	TRINITY_DN5284_c0_g1	22	42	33	-35.30	-23.50	0.6657223796034	5.5	2-15,41-28;18-20,25-23	1-1,42-42[UP5];16-17,27-26[SIL];21-21,22-22[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	AGAAAGGGAGAAGAAGAAGGA&CCUUUCUUCUUCUUCGCUUCG	3	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5284_c0_g1_33_TPlot.pdf
TRINITY_DN5284_c0_g1:34	si_s69	TRINITY_DN5284_c0_g1	23	42	34	-23.40	-17.40	0.743589743589744	7.5	3-7,40-36;9-21,35-23	1-2,42-41[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAAGGGAGAAGA-AGAAGGA&AACUUCUAUUUUUUUUCUUUC	2	0.99998908709614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5284_c0_g1_34_TPlot.pdf
TRINITY_DN5284_c0_g1:36	si_a497	TRINITY_DN5284_c0_g1	25	45	36	-32.00	-23.00	0.71875	5.5	2-5,44-41;7-12,39-34;14-21,32-25	1-1,45-45[UP5];6-6,40-40[SIL];13-13,33-33[SIL]	((((((((.((((((.((((.&.)))).)))))).))))))))	AAGGGAGAAGAAGAAGGACAA&AUGUCGUUUUUCGUCUUCCUU	2	0.997915632487503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5284_c0_g1_36_TPlot.pdf
TRINITY_DN5284_c0_g1:37	si_a496	TRINITY_DN5284_c0_g1	26	46	37	-32.40	-22.10	0.682098765432099	7.5	3-6,44-41;8-13,39-34;15-21,32-26	1-2,46-45[UP5];7-7,40-40[SIL];14-14,33-33[SIL]	(((((((.((((((.((((..&..)))).)))))).)))))))	AGGGAGAAGAAGAAGGACAAA&UAUGUCGUUUUUCGUCUUCCU	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5284_c0_g1_37_TPlot.pdf
TRINITY_DN5284_c0_g1:38	si_s84	TRINITY_DN5284_c0_g1	27	48	38	-32.30	-22.60	0.69969040247678	6.5	1-5,48-44;7-20,41-28	6-6,43-42[AILt];21-21,27-27[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	GGGAGAAGAAGAAGGACAAAGA&UCUUU-CCUUUCUUCUUCUUCG	3	0.999999999975549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5284_c0_g1_38_TPlot.pdf
TRINITY_DN5284_c0_g1:39	si_s83	TRINITY_DN5284_c0_g1	28	49	39	-30.90	-22.10	0.715210355987055	6.5	2-6,48-44;8-21,41-28	1-1,49-49[UP5];7-7,43-42[AILt]	((((((((((((((..(((((.&.)))))-.))))))))))))))	GGAGAAGAAGAAGGACAAAGAC&UUCUUU-CCUUUCUUCUUCUUC	4	0.999999999995797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5284_c0_g1_39_TPlot.pdf
TRINITY_DN5284_c0_g2:1619	si_a141	TRINITY_DN5284_c0_g2	1608	1628	1619	-23.80	-15.90	0.668067226890756	15	8-21,1621-1608	1-7,1628-1622[UP5]	((((((((((((((.......&.......))))))))))))))	UAAGACAAUAGCGAAUACAAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999953265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN5284_c0_g2_1619_TPlot.pdf
TRINITY_DN5284_c0_g2:1648	si_a502	TRINITY_DN5284_c0_g2	1637	1665	1648	-32.10	-21.40	0.666666666666667	22	1-7,1665-1659;8-18,1650-1640	x-x,1658-1651[BULt];19-21,1639-1637[UP3]	...(((((((((((........(((((((&)))))))--------)))))))))))...	CUACCAAGGAAGAUCUGGAGAAGGAGAAC&GUUUUUC--------GUCUUCCUUGGAAU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN5284_c0_g2_1648_TPlot.pdf
TRINITY_DN5284_c0_g2:1649	si_a501	TRINITY_DN5284_c0_g2	1638	1666	1649	-33.50	-23.50	0.701492537313433	21	1-8,1666-1659;9-19,1650-1640	x-x,1658-1651[BULt];20-21,1639-1638[UP3]	..(((((((((((........((((((((&))))))))--------)))))))))))..	UACCAAGGAAGAUCUGGAGAAGGAGAACG&CGUUUUUC--------GUCUUCCUUGGAA	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5284_c0_g2_1649_TPlot.pdf
TRINITY_DN5284_c0_g2:1650	si_a500	TRINITY_DN5284_c0_g2	1639	1667	1650	-34.40	-25.10	0.729651162790698	20	1-9,1667-1659;10-20,1650-1640	x-x,1658-1651[BULt];21-21,1639-1639[UP3]	.(((((((((((........(((((((((&)))))))))--------))))))))))).	ACCAAGGAAGAUCUGGAGAAGGAGAACGA&UCGUUUUUC--------GUCUUCCUUGGA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN5284_c0_g2_1650_TPlot.pdf
TRINITY_DN5284_c0_g2:1659	si_a499	TRINITY_DN5284_c0_g2	1640	1668	1659	-35.20	-25.10	0.713068181818182	20	2-10,1667-1659;11-21,1650-1640	1-1,1668-1668[UP5];x-x,1658-1651[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	CCAAGGAAGAUCUGGAGAAGGAGAACGAG&GUCGUUUUUC--------GUCUUCCUUGG	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5284_c0_g2_1659_TPlot.pdf
TRINITY_DN5284_c0_g2:1660	si_s809	TRINITY_DN5284_c0_g2	1649	1670	1660	-28.50	-20.00	0.701754385964912	10	1-8,1670-1663;10-17,1660-1653	9-9,1662-1661[AILt];18-21,1652-1649[UP3]	....((((((((..((((((((&))))))))-.))))))))....	AUCUGGAGAAGGAGAACGAGGA&UCUUCGUU-ACCUUUUCUUAAU	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN5284_c0_g2_1660_TPlot.pdf
TRINITY_DN5284_c0_g2:1661	si_s808	TRINITY_DN5284_c0_g2	1650	1671	1661	-28.60	-20.00	0.699300699300699	10	2-9,1670-1663;11-18,1660-1653	1-1,1671-1671[UP5];10-10,1662-1661[AILt];19-21,1652-1650[UP3]	...((((((((..((((((((.&.))))))))-.))))))))...	UCUGGAGAAGGAGAACGAGGAA&AUCUUCGUU-ACCUUUUCUUAA	2	0.997966876744423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5284_c0_g2_1661_TPlot.pdf
TRINITY_DN5284_c0_g2:1665	si_s805	TRINITY_DN5284_c0_g2	1653	1674	1665	-28.60	-20.00	0.699300699300699	12	5-12,1670-1663;14-21,1660-1653	1-4,1674-1671[UP5];13-13,1662-1661[AILt]	((((((((..((((((((....&....))))))))-.))))))))	GGAGAAGGAGAACGAGGAAAAG&UUUAUCUUCGUU-ACCUUUUCU	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN5284_c0_g2_1665_TPlot.pdf
TRINITY_DN5284_c0_g2:1666	si_s804	TRINITY_DN5284_c0_g2	1654	1675	1666	-27.90	-18.90	0.67741935483871	12.5	6-13,1670-1663;15-21,1660-1654	1-5,1675-1671[UP5];14-14,1662-1661[AILt]	(((((((..((((((((.....&.....))))))))-.)))))))	GAGAAGGAGAACGAGGAAAAGG&UUUUAUCUUCGUU-ACCUUUUC	3	0.999999967025317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5284_c0_g2_1666_TPlot.pdf
TRINITY_DN5284_c0_g2:2088	si_a631	TRINITY_DN5284_c0_g2	2077	2097	2088	-25.70	-17.90	0.696498054474708	7.5	3-20,2095-2078	1-2,2097-2096[UP5];21-21,2077-2077[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUCAAGAAAAUUGAUAUAGGA&UAUUAUGUCGAUUUUUUUGAG	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN5284_c0_g2_2088_TPlot.pdf
TRINITY_DN5284_c0_g2:2330	si_s84	TRINITY_DN5284_c0_g2	2319	2339	2330	-32.30	-22.00	0.681114551083591	8.5	1-4,2339-2336;6-17,2334-2323	5-5,2335-2335[SIL];18-21,2322-2319[UP3]	....((((((((((((.((((&)))).))))))))))))....	AGCCGAGGAGGAAAGGCGAGA&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5284_c0_g2_2330_TPlot.pdf
TRINITY_DN5284_c0_g2:2495	si_s888	TRINITY_DN5284_c0_g2	2484	2504	2495	-26.80	-17.50	0.652985074626866	12	5-19,2500-2486	1-4,2504-2501[UP5];20-21,2485-2484[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGAGAAAGUUUGUUUAACGA&AAAAUAAAUAGGCUUUCUCUU	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN5284_c0_g2_2495_TPlot.pdf
TRINITY_DN5284_c0_g2:2496	si_s887	TRINITY_DN5284_c0_g2	2485	2505	2496	-26.80	-17.50	0.652985074626866	12.5	6-20,2500-2486	1-5,2505-2501[UP5];21-21,2485-2485[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGAGAAAGUUUGUUUAACGAG&AAAAAUAAAUAGGCUUUCUCU	2	0.994829164283728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN5284_c0_g2_2496_TPlot.pdf
TRINITY_DN5284_c0_g2:573	si_s811	TRINITY_DN5284_c0_g2	562	582	573	-26.40	-17.40	0.659090909090909	9	1-3,582-580;5-15,578-568;17-19,566-564	4-4,579-579[SIL];16-16,567-567[SIL];20-21,563-562[UP3]	..(((.(((((((((((.(((&))).))))))))))).)))..	CCAUUUAGAGGAGGUAGGGGA&UUCGUUACCUUUUCUUAAUAA	4	0.999999965938056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN5284_c0_g2_573_TPlot.pdf
TRINITY_DN5284_c0_g2:574	si_s810	TRINITY_DN5284_c0_g2	563	583	574	-27.90	-20.60	0.738351254480287	7.5	1-4,583-580;6-16,578-568;18-20,566-564	5-5,579-579[SIL];17-17,567-567[SIL];21-21,563-563[UP3]	.(((.(((((((((((.((((&)))).))))))))))).))).	CAUUUAGAGGAGGUAGGGGAG&CUUCGUUACCUUUUCUUAAUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN5284_c0_g2_574_TPlot.pdf
TRINITY_DN5284_c0_g3:145	si_a313	TRINITY_DN5284_c0_g3	134	153	145	-28.70	-20.20	0.70383275261324	7.5	1-8,153-146;10-15,145-140;17-19,138-136	9-9,x-x[BULq];16-16,139-139[SIL];20-21,135-134[UP3]	..(((.((((((-((((((((&)))))))).)))))).)))..	CCAAUGGUGGAU-GAUCCAGG&CUUGGAUUUAUCCAUGAUUUU	4	0.981768741384199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN5284_c0_g3_145_TPlot.pdf
TRINITY_DN5284_c1_g1:430	si_a792	TRINITY_DN5284_c1_g1	419	439	430	-27.60	-18.70	0.677536231884058	7	2-10,438-430;12-15,428-425;17-20,423-420	1-1,439-439[UP5];11-11,429-429[SIL];16-16,424-424[SIL];21-21,419-419[UP3]	.((((.((((.(((((((((.&.))))))))).)))).)))).	GGGAUAGGAAUGUAGGAAAAA&AUUUUUCUAUUUUCCAAUCCG	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN5284_c1_g1_430_TPlot.pdf
TRINITY_DN5285_c0_g1:920	si_s47	TRINITY_DN5285_c0_g1	909	929	920	-26.30	-17.50	0.665399239543726	11	6-21,924-909	1-5,929-925[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUGAUUUGGAAUCCAACUUUA&AAUAAUUGGAUUUCAAGUUAG	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN5285_c0_g1_920_TPlot.pdf
TRINITY_DN5286_c0_g2:335	si_s73	TRINITY_DN5286_c0_g2	322	345	335	-24.00	-16.20	0.675	11	1-5,345-341;6-10,339-335;11-20,332-323	x-x,340-340[BULt];x-x,334-333[BULt];21-21,322-322[UP3]	.((((((((((..(((((.(((((&)))))-)))))--)))))))))).	UGAGGAAGGAACUGAAGACAUGGA&UCUAU-UUUUU--UUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5286_c0_g2_335_TPlot.pdf
TRINITY_DN5286_c0_g2:391	si_a759	TRINITY_DN5286_c0_g2	380	400	391	-32.60	-22.10	0.677914110429448	6	1-3,400-398;5-12,396-389;14-21,387-380	4-4,397-397[SIL];13-13,388-388[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	UUAAUCAGUGGCCCAAAAGAG&CUCCUUUGGGUUUUUGAUUGA	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5286_c0_g2_391_TPlot.pdf
TRINITY_DN5286_c0_g2:392	si_a758	TRINITY_DN5286_c0_g2	381	401	392	-34.00	-23.70	0.697058823529412	5.5	1-4,401-398;6-13,396-389;15-21,387-381	5-5,397-397[SIL];14-14,388-388[SIL]	(((((((.((((((((.((((&)))).)))))))).)))))))	UAAUCAGUGGCCCAAAAGAGG&CCUCCUUUGGGUUUUUGAUUG	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN5286_c0_g2_392_TPlot.pdf
TRINITY_DN5286_c0_g2:393	si_a757	TRINITY_DN5286_c0_g2	382	402	393	-33.10	-22.60	0.682779456193353	5.5	2-5,401-398;7-14,396-389;16-21,387-382	1-1,402-402[UP5];6-6,397-397[SIL];15-15,388-388[SIL]	((((((.((((((((.((((.&.)))).)))))))).))))))	AAUCAGUGGCCCAAAAGAGGA&ACCUCCUUUGGGUUUUUGAUU	2	0.999392074706159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5286_c0_g2_393_TPlot.pdf
TRINITY_DN5287_c0_g1:1011	si_a665	TRINITY_DN5287_c0_g1	997	1021	1011	-29.60	-19.90	0.672297297297297	10.5	2-7,1020-1015;9-13,1012-1008;14-21,1004-997	1-1,1021-1021[UP5];8-8,1014-1013[AILt];x-x,1007-1005[BULt]	((((((((...(((((..((((((.&.))))))-.)))))---))))))))	GAUGGGGAAGUAUCAAGCGGGCAUG&AAUGCCU-AUUGAU---UCCUUAUU	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN5287_c0_g1_1011_TPlot.pdf
TRINITY_DN5287_c0_g1:1247	si_s308	TRINITY_DN5287_c0_g1	1235	1256	1247	-32.80	-23.90	0.728658536585366	7.5	1-11,1256-1246;12-12,1244-1244;14-19,1242-1237	x-x,1245-1245[BULt];13-13,1243-1243[SIL];20-21,1236-1235[UP3]	..((((((.(.(((((((((((&)))))))))))-).))))))..	GCGGAGGAGGCGGAUUUUCGCA&UGCGAAAAUUC-UGUCCUUCUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN5287_c0_g1_1247_TPlot.pdf
TRINITY_DN5287_c0_g1:1311	si_s896	TRINITY_DN5287_c0_g1	1300	1320	1311	-31.60	-22.40	0.708860759493671	8	2-14,1319-1307	1-1,1320-1320[UP5];15-21,1306-1300[UP3]	.......(((((((((((((.&.))))))))))))).......	CCACGACGAAGAGAAAGCCUU&UAGGCUUUCUCUUCAAUUUCA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5287_c0_g1_1311_TPlot.pdf
TRINITY_DN5287_c0_g1:1313	si_s894	TRINITY_DN5287_c0_g1	1302	1322	1313	-29.10	-22.40	0.769759450171821	10	4-16,1319-1307	1-3,1322-1320[UP5];17-21,1306-1302[UP3]	.....(((((((((((((...&...))))))))))))).....	ACGACGAAGAGAAAGCCUUGC&AAUAGGCUUUCUCUUCAAUUU	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN5287_c0_g1_1313_TPlot.pdf
TRINITY_DN5287_c0_g1:1315	si_s892	TRINITY_DN5287_c0_g1	1304	1324	1315	-29.50	-22.40	0.759322033898305	12	6-18,1319-1307	1-5,1324-1320[UP5];19-21,1306-1304[UP3]	...(((((((((((((.....&.....)))))))))))))...	GACGAAGAGAAAGCCUUGCAG&UAAAUAGGCUUUCUCUUCAAU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN5287_c0_g1_1315_TPlot.pdf
TRINITY_DN5287_c0_g1:1316	si_s891	TRINITY_DN5287_c0_g1	1305	1325	1316	-29.60	-22.40	0.756756756756757	13	7-19,1319-1307	1-6,1325-1320[UP5];20-21,1306-1305[UP3]	..(((((((((((((......&......)))))))))))))..	ACGAAGAGAAAGCCUUGCAGU&AUAAAUAGGCUUUCUCUUCAA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN5287_c0_g1_1316_TPlot.pdf
TRINITY_DN5287_c0_g1:2245	si_s278	TRINITY_DN5287_c0_g1	2236	2252	2245	-35.10	-23.10	0.658119658119658	11	1-8,2252-2245;13-21,2244-2236	9-12,x-x[BULq]	(((((((((----((((((((&))))))))....)))))))))	GAUUGGGCG----GUGUCGGU&AUCGACAUAAUACGCCUAGUC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s278_TRINITY_DN5287_c0_g1_2245_TPlot.pdf
TRINITY_DN5287_c0_g1:2324	si_s308	TRINITY_DN5287_c0_g1	2313	2330	2324	-32.80	-21.40	0.652439024390244	11.5	1-5,2330-2326;9-19,2325-2315	6-8,x-x[BULq];20-21,2314-2313[UP3]	..(((((((((((---(((((&)))))...)))))))))))..	CCGGGGGGCGGAG---UCGCA&UGCGAAAAUUCUGUCCUUCUU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN5287_c0_g1_2324_TPlot.pdf
TRINITY_DN5287_c0_g1:2335	si_a660	TRINITY_DN5287_c0_g1	2322	2343	2335	-36.60	-24.88	0.679781420765027	11	1-5,2343-2339;8-12,2337-2333;15-21,2328-2322	6-7,2338-2338[AILq];13-14,2332-2329[AILt]	(((((((....(((((.-(((((&)))))..)))))--..)))))))	GGAGUCGCACAAGGCAG-UCCCG&CGGGAAAUGCCU--AUUGAUUCC	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN5287_c0_g1_2335_TPlot.pdf
TRINITY_DN5287_c0_g1:557	si_s377	TRINITY_DN5287_c0_g1	546	568	557	-44.10	-30.48	0.691156462585034	12.5	3-9,566-560;12-20,555-547	1-2,568-567[UP5];10-11,559-556[AILt];21-21,546-546[UP3]	.(((((((((....(((((((..&..)))))))--..))))))))).	CUGAGGCGGAGUAUCGCGAGCAG&UCGCUCGCG--UGUCCGCCUUAC	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN5287_c0_g1_557_TPlot.pdf
TRINITY_DN5287_c0_g1:562	si_s374	TRINITY_DN5287_c0_g1	549	572	562	-45.60	-29.98	0.657456140350877	10	1-3,572-570;5-5,568-568;6-12,566-560;15-21,555-549	4-4,569-569[SIL];x-x,567-567[BULt];13-14,559-556[AILt]	(((((((....(((((((.(.(((&))).)-)))))))--..)))))))	AGGCGGAGUAUCGCGAGCAGCUCG&CGAUC-GCUCGCG--UGUCCGCCU	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s374_TRINITY_DN5287_c0_g1_562_TPlot.pdf
TRINITY_DN5287_c0_g1:681	si_a622	TRINITY_DN5287_c0_g1	670	690	681	-35.10	-23.00	0.655270655270655	7.5	1-4,690-687;6-10,685-681;12-16,680-676;17-21,674-670	5-5,686-686[SIL];11-11,x-x[BULq];x-x,675-675[BULt]	(((((.(((((-(((((.((((&)))).))))).)))))-)))))	GUCGACCGUGG-ACGCCAAGUC&GACUAGGCGUAUUAUG-UCGAU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN5287_c0_g1_681_TPlot.pdf
TRINITY_DN5287_c0_g1:934	si_s320	TRINITY_DN5287_c0_g1	924	944	934	-31.00	-21.70	0.7	8	1-3,944-942;4-15,940-929;18-20,927-925	x-x,941-941[BULt];16-17,928-928[AILq];21-21,924-924[UP3]	.(((.-((((((((((((.(((&)))-))))))))))))..))).	AAUGG-UGUGACGAGGAGAGAC&GUC-CUUCUUGUUACAAACAUA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN5287_c0_g1_934_TPlot.pdf
TRINITY_DN5287_c0_g1:936	si_s318	TRINITY_DN5287_c0_g1	926	946	936	-32.80	-23.40	0.713414634146341	7.5	1-5,946-942;6-17,940-929;20-21,927-926	x-x,941-941[BULt];18-19,928-928[AILq]	((.-((((((((((((.(((((&)))))-))))))))))))..))	UGG-UGUGACGAGGAGAGACGG&CUGUC-CUUCUUGUUACAAACA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN5287_c0_g1_936_TPlot.pdf
TRINITY_DN5287_c0_g1:942	si_s313	TRINITY_DN5287_c0_g1	930	951	942	-30.80	-23.30	0.756493506493507	11.5	5-10,947-942;11-21,940-930	1-4,951-948[UP5];x-x,941-941[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	GUGACGAGGAGAGACGGACUUU&AAAUUCUGUC-CUUCUUGUUAC	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN5287_c0_g1_942_TPlot.pdf
TRINITY_DN5289_c0_g1:1462	si_a407	TRINITY_DN5289_c0_g1	1451	1473	1462	-19.80	-14.00	0.707070707070707	9	1-9,1473-1465;10-18,1462-1454	x-x,1464-1463[BULt];19-21,1453-1451[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	ACGUAAAUAUAAAAGCAAAGCAA&UUGUUUUGU--UUAUAUUUAAAU	2	0.99998838640176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5289_c0_g1_1462_TPlot.pdf
TRINITY_DN5289_c0_g1:1465	si_a406	TRINITY_DN5289_c0_g1	1452	1474	1465	-19.80	-14.00	0.707070707070707	9	2-10,1473-1465;11-19,1462-1454	1-1,1474-1474[UP5];x-x,1464-1463[BULt];20-21,1453-1452[UP3]	..(((((((((..(((((((((.&.)))))))))--)))))))))..	CGUAAAUAUAAAAGCAAAGCAAA&AUUGUUUUGU--UUAUAUUUAAA	3	0.999999999883783	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5289_c0_g1_1465_TPlot.pdf
TRINITY_DN528_c0_g1:856	si_a634	TRINITY_DN528_c0_g1	845	864	856	-26.40	-19.90	0.753787878787879	7.5	2-7,863-858;9-20,857-846	1-1,864-864[UP5];8-8,x-x[BULq];21-21,845-845[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	CUGCUCAGGGAGA-CGACAUC&UAUGUCGAUUUUUUUGAGUAA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN528_c0_g1_856_TPlot.pdf
TRINITY_DN528_c0_g1:857	si_a633	TRINITY_DN528_c0_g1	846	865	857	-26.40	-19.60	0.742424242424243	8	3-8,863-858;10-21,857-846	1-2,865-864[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	UGCUCAGGGAGA-CGACAUCA&UUAUGUCGAUUUUUUUGAGUA	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN528_c0_g1_857_TPlot.pdf
TRINITY_DN528_c0_g1:858	si_a632	TRINITY_DN528_c0_g1	847	866	858	-26.10	-18.40	0.704980842911877	10	4-9,863-858;11-21,857-847	1-3,866-864[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	GCUCAGGGAGA-CGACAUCAC&AUUAUGUCGAUUUUUUUGAGU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN528_c0_g1_858_TPlot.pdf
TRINITY_DN528_c0_g1:912	si_a21	TRINITY_DN528_c0_g1	901	921	912	-24.30	-16.50	0.679012345679012	9	1-3,921-919;5-8,917-914;10-19,912-903	4-4,918-918[SIL];9-9,913-913[SIL];20-21,902-901[UP3]	..((((((((((.((((.(((&))).)))).))))))))))..	CAAGAACUAGAGUUAGAAAGG&CCUAUUUAUUUUUAGUUCUAA	4	0.999974821753799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN528_c0_g1_912_TPlot.pdf
TRINITY_DN52907_c0_g1:328	si_a810	TRINITY_DN52907_c0_g1	317	338	328	-35.30	-26.50	0.75070821529745	5	1-6,338-333;8-20,330-318	7-7,332-331[AILt];21-21,317-317[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AUUUCUUCUUCUUCUUCUUCGG&CCGAAG-CGAAGAAGAAGAAAG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a810_TRINITY_DN52907_c0_g1_328_TPlot.pdf
TRINITY_DN52907_c0_g1:330	si_a808	TRINITY_DN52907_c0_g1	319	340	330	-34.90	-28.20	0.808022922636103	4	1-8,340-333;10-21,330-319	9-9,332-331[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	UUCUUCUUCUUCUUCUUCGGAU&AUCCGAAG-CGAAGAAGAAGAA	0	0.00249835905086537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN52907_c0_g1_330_TPlot.pdf
TRINITY_DN5290_c0_g1:920	si_s79	TRINITY_DN5290_c0_g1	909	929	920	-26.20	-18.10	0.690839694656489	8	1-9,929-921;12-20,918-910	10-11,920-919[SIL];21-21,909-909[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UGGAAGAAGGAUAAGAAGGAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5290_c0_g1_920_TPlot.pdf
TRINITY_DN5292_c0_g1:2640	si_s86	TRINITY_DN5292_c0_g1	2629	2648	2640	-32.90	-21.60	0.656534954407295	11	2-5,2647-2644;11-21,2639-2629	1-1,2648-2648[UP5];6-10,2643-2640[AILq]	(((((((((((....-((((.&.)))).....)))))))))))	AGCGAAGAAGAUAUU-GGAAU&UUUCCUUUCUUCUUCUUCGCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5292_c0_g1_2640_TPlot.pdf
TRINITY_DN52958_c0_g1:85	si_s484	TRINITY_DN52958_c0_g1	74	94	85	-20.50	-15.90	0.775609756097561	5	1-13,94-82;16-21,79-74	14-15,81-80[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UUAUGUAGGAAUAGGUAUAGG&CCUAUAUUUAUUUAAAUAUAA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN52958_c0_g1_85_TPlot.pdf
TRINITY_DN52974_c0_g1:133	si_a7	TRINITY_DN52974_c0_g1	119	142	133	-29.10	-19.74	0.678350515463917	13	1-11,142-132;13-17,127-123	12-12,131-128[AILt];18-21,122-119[UP3]	....(((((....(((((((((((&)))))))))))---.)))))....	UUGAAGGCUAUACUCUCUUCAGUU&AAUUGAAGAGA---AAGCCUAUUU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN52974_c0_g1_133_TPlot.pdf
TRINITY_DN52974_c0_g1:150	si_s899	TRINITY_DN52974_c0_g1	139	168	150	-28.30	-18.70	0.660777385159011	21.5	1-8,168-161;9-21,151-139	x-x,160-152[BULt]	(((((((((((((.........((((((((&))))))))---------)))))))))))))	AGUUGGAAUUGAGGCAGAGGAUGAGAAGGU&GCUUUCUC---------UUCAAUUUCAAUU	2	0.999998867138376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN52974_c0_g1_150_TPlot.pdf
TRINITY_DN52999_c0_g1:318	si_a629	TRINITY_DN52999_c0_g1	307	328	318	-26.30	-17.20	0.653992395437262	7	2-4,327-325;5-20,323-308	1-1,328-328[UP5];x-x,324-324[BULt];21-21,307-307[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	GGAGAAAAUUGGCAUAAUUACC&CGUA-UUAUGUCGAUUUUUUUG	4	0.999999129531883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN52999_c0_g1_318_TPlot.pdf
TRINITY_DN5299_c0_g1:314	si_s1	TRINITY_DN5299_c0_g1	303	322	314	-18.70	-12.20	0.652406417112299	10	2-8,321-315;11-21,313-303	1-1,322-322[UP5];9-10,314-314[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	UAAUGAUGAGUU-UGUGGAGU&UUUUUAUAUUACUUAUUAUUA	3	0.999999999999821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN5299_c0_g1_314_TPlot.pdf
TRINITY_DN5299_c0_g1:319	si_a706	TRINITY_DN5299_c0_g1	306	328	319	-30.30	-20.70	0.683168316831683	7.5	2-12,327-317;13-16,315-312;18-20,309-307	1-1,328-328[UP5];x-x,316-316[BULt];17-17,311-310[AILt];21-21,306-306[UP3]	.(((..((((.(((((((((((.&.)))))))))))-))))-.))).	UGAUGAGUUUGUGGAGUGUACCU&UGGUACAUUCCA-AAAU-AAUCG	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a706_TRINITY_DN5299_c0_g1_319_TPlot.pdf
TRINITY_DN5299_c0_g1:3240	si_a494	TRINITY_DN5299_c0_g1	3227	3249	3240	-29.50	-19.40	0.657627118644068	7	2-16,3248-3234;17-21,3231-3227	1-1,3249-3249[UP5];x-x,3233-3232[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GAAGAACUGGAAGAUGAUAUAUG&AAUAUGUCGUUUUUCG--UCUUC	3	0.999999999999665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN5299_c0_g1_3240_TPlot.pdf
TRINITY_DN5299_c0_g1:383	si_s79	TRINITY_DN5299_c0_g1	372	392	383	-26.20	-17.60	0.67175572519084	14.5	8-21,385-372	1-7,392-386[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAGGAAAGGGAAUCGCUGA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5299_c0_g1_383_TPlot.pdf
TRINITY_DN5299_c0_g1:413	si_a149	TRINITY_DN5299_c0_g1	402	423	413	-29.40	-19.30	0.656462585034014	8.5	2-7,422-417;8-18,415-405	1-1,423-423[UP5];x-x,416-416[BULt];19-21,404-402[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	UCAGAUCUUAAAACUGACGACU&CGUUGUU-GUUUUAAGGUCAAU	4	0.999999994794446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN5299_c0_g1_413_TPlot.pdf
TRINITY_DN5299_c0_g1:5237	si_a70	TRINITY_DN5299_c0_g1	5224	5246	5237	-23.90	-16.20	0.677824267782427	7.5	1-6,5246-5241;9-16,5238-5231;17-21,5228-5224	7-8,5240-5239[SIL];x-x,5230-5229[BULt]	(((((..((((((((..((((((&))))))..))))))))--)))))	GAUGGCAAGAACAAUGGGAAAGA&UCUUUCAAAUUGUUUU--UCAUU	3	0.999999989599644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN5299_c0_g1_5237_TPlot.pdf
TRINITY_DN5299_c0_g1:5238	si_a69	TRINITY_DN5299_c0_g1	5225	5247	5238	-24.00	-16.00	0.666666666666667	7	1-7,5247-5241;10-17,5238-5231;18-21,5228-5225	8-9,5240-5239[SIL];x-x,5230-5229[BULt]	((((..((((((((..(((((((&)))))))..))))))))--))))	AUGGCAAGAACAAUGGGAAAGAA&UUCUUUCAAAUUGUUUU--UCAU	4	0.999999999980232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5299_c0_g1_5238_TPlot.pdf
TRINITY_DN5299_c0_g1:5792	si_a639	TRINITY_DN5299_c0_g1	5781	5801	5792	-23.60	-15.40	0.652542372881356	11	2-8,5800-5794;10-17,5792-5785	1-1,5801-5801[UP5];9-9,5793-5793[SIL];18-21,5784-5781[UP3]	....((((((((.(((((((.&.))))))).))))))))....	CAGAGUUGCUCAUGAAGGUCC&CGAUUUUUUUGAGUAAUAUAU	3	0.999999999154983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN5299_c0_g1_5792_TPlot.pdf
TRINITY_DN5299_c0_g1:84	si_s75	TRINITY_DN5299_c0_g1	73	93	84	-24.00	-16.90	0.704166666666667	5.5	1-6,93-88;8-17,86-77;19-21,75-73	7-7,87-87[SIL];18-18,76-76[SIL]	(((.((((((((((.((((((&)))))).)))))))))).)))	GGGUAGGAGGGAAAUAAAAUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5299_c0_g1_84_TPlot.pdf
TRINITY_DN5299_c0_g2:53	si_s243	TRINITY_DN5299_c0_g2	42	63	53	-33.80	-22.50	0.665680473372781	12.5	6-9,58-55;10-20,53-43	1-5,63-59[UP5];x-x,54-54[BULt];21-21,42-42[UP3]	.(((((((((((.((((.....&.....))))-))))))))))).	GAUCGGGGAAUGUCCUAACCGG&AUCAAUAGG-CAUUUCCCGAUA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s243_TRINITY_DN5299_c0_g2_53_TPlot.pdf
TRINITY_DN5299_c0_g2:84	si_s75	TRINITY_DN5299_c0_g2	73	93	84	-24.00	-17.90	0.745833333333333	5	1-6,93-88;8-17,86-77;19-21,75-73	7-7,87-87[SIL];18-18,76-76[SIL]	(((.((((((((((.((((((&)))))).)))))))))).)))	GGAUAGGAGGGAAAUAAAAUA&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999996581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5299_c0_g2_84_TPlot.pdf
TRINITY_DN5299_c0_g3:254	si_s75	TRINITY_DN5299_c0_g3	243	263	254	-24.00	-15.90	0.6625	6	1-6,263-258;8-17,256-247;19-20,245-244	7-7,257-257[SIL];18-18,246-246[SIL];21-21,243-243[UP3]	.((.((((((((((.((((((&)))))).)))))))))).)).	UGGUAGGAGGGAAAUAAAAUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5299_c0_g3_254_TPlot.pdf
TRINITY_DN5299_c0_g3:2872	si_s67	TRINITY_DN5299_c0_g3	2861	2881	2872	-25.60	-17.90	0.69921875	8.5	1-2,2881-2880;5-6,2877-2876;8-21,2874-2861	3-4,2879-2878[SIL];7-7,2875-2875[SIL]	((((((((((((((.((..((&))..)).))))))))))))))	GGGGAAAAAAGUAGUAGGGGC&GCAACUUCUAUUUUUUUUCUU	2	0.99958150391399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN5299_c0_g3_2872_TPlot.pdf
TRINITY_DN5299_c0_g3:2873	si_s66	TRINITY_DN5299_c0_g3	2862	2882	2873	-26.30	-17.80	0.67680608365019	9	2-3,2881-2880;6-7,2877-2876;9-21,2874-2862	1-1,2882-2882[UP5];4-5,2879-2878[SIL];8-8,2875-2875[SIL]	(((((((((((((.((..((.&.))..)).)))))))))))))	GGGAAAAAAGUAGUAGGGGCC&AGCAACUUCUAUUUUUUUUCU	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN5299_c0_g3_2873_TPlot.pdf
TRINITY_DN5299_c0_g3:3053	si_s73	TRINITY_DN5299_c0_g3	3037	3062	3053	-24.00	-18.70	0.779166666666667	14.5	1-12,3062-3051;13-21,3045-3037	x-x,3050-3046[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	GGAGGAGAGCCGCAAGAAGAAGUAGA&UCUAUUUUUUUU-----CUUUCCUUU	2	0.998313119563257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5299_c0_g3_3053_TPlot.pdf
TRINITY_DN5299_c0_g3:3054	si_s72	TRINITY_DN5299_c0_g3	3038	3063	3054	-24.10	-19.10	0.79253112033195	9	1-13,3063-3051;14-21,3045-3038	x-x,3050-3046[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	GAGGAGAGCCGCAAGAAGAAGUAGAA&UUCUAUUUUUUUU-----CUUUCCUU	2	0.992105207356984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5299_c0_g3_3054_TPlot.pdf
TRINITY_DN5299_c0_g3:3055	si_s71	TRINITY_DN5299_c0_g3	3039	3064	3055	-25.70	-17.90	0.696498054474708	9	2-14,3063-3051;15-21,3045-3039	1-1,3064-3064[UP5];x-x,3050-3046[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	AGGAGAGCCGCAAGAAGAAGUAGAAC&CUUCUAUUUUUUUU-----CUUUCCU	2	0.999999999986679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5299_c0_g3_3055_TPlot.pdf
TRINITY_DN5299_c0_g3:3112	si_a403	TRINITY_DN5299_c0_g3	3101	3121	3112	-22.00	-17.60	0.8	5.5	3-21,3119-3101	1-2,3121-3120[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAGUGUAAAUAAAACAAUUAU&AGAAUUGUUUUGUUUAUAUUU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5299_c0_g3_3112_TPlot.pdf
TRINITY_DN5299_c0_g3:3145	si_a446	TRINITY_DN5299_c0_g3	3134	3155	3145	-25.50	-17.60	0.690196078431373	7	1-4,3155-3152;6-6,3150-3150;7-19,3148-3136	5-5,3151-3151[SIL];x-x,3149-3149[BULt];20-21,3135-3134[UP3]	..(((((((((((((.(.((((&)))).)-)))))))))))))..	AAAACAACAAUUAUCAUGGUAU&AUAUGA-GAUAAUUGUUGUUAU	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN5299_c0_g3_3145_TPlot.pdf
TRINITY_DN5299_c0_g3:3146	si_a445	TRINITY_DN5299_c0_g3	3135	3156	3146	-27.30	-18.00	0.659340659340659	7	2-5,3155-3152;7-7,3150-3150;8-20,3148-3136	1-1,3156-3156[UP5];6-6,3151-3151[SIL];x-x,3149-3149[BULt];21-21,3135-3135[UP3]	.(((((((((((((.(.((((.&.)))).)-))))))))))))).	AAACAACAAUUAUCAUGGUAUG&GAUAUGA-GAUAAUUGUUGUUA	2	0.974879224210294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN5299_c0_g3_3146_TPlot.pdf
TRINITY_DN5299_c1_g1:1545	si_s29	TRINITY_DN5299_c1_g1	1537	1554	1545	-26.40	-17.50	0.662878787878788	8.5	1-10,1554-1545;14-21,1544-1537	11-13,x-x[BULq]	((((((((---((((((((((&))))))))))...))))))))	GUUAGGGA---AGUUGUAGUC&GAUUGCAACUAAAUCUUUAAU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN5299_c1_g1_1545_TPlot.pdf
TRINITY_DN529_c0_g1:1383	si_s798	TRINITY_DN529_c0_g1	1372	1392	1383	-29.30	-20.00	0.68259385665529	7	1-4,1392-1389;6-13,1387-1380;16-21,1377-1372	5-5,1388-1388[SIL];14-15,1379-1378[SIL]	((((((..((((((((.((((&)))).))))))))..))))))	GUAACGUUGGUGAAAUUCGGG&CUCGUAUUUUAUCUUCGUUAC	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN529_c0_g1_1383_TPlot.pdf
TRINITY_DN529_c0_g1:1384	si_s797	TRINITY_DN529_c0_g1	1373	1393	1384	-30.00	-21.10	0.703333333333333	6.5	1-5,1393-1389;7-14,1387-1380;17-21,1377-1373	6-6,1388-1388[SIL];15-16,1379-1378[SIL]	(((((..((((((((.(((((&))))).))))))))..)))))	UAACGUUGGUGAAAUUCGGGC&GCUCGUAUUUUAUCUUCGUUA	2	0.97609923111979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN529_c0_g1_1384_TPlot.pdf
TRINITY_DN529_c0_g1:1385	si_s796	TRINITY_DN529_c0_g1	1374	1394	1385	-30.30	-19.70	0.65016501650165	7.5	2-6,1393-1389;8-15,1387-1380;18-21,1377-1374	1-1,1394-1394[UP5];7-7,1388-1388[SIL];16-17,1379-1378[SIL]	((((..((((((((.(((((.&.))))).))))))))..))))	AACGUUGGUGAAAUUCGGGCG&AGCUCGUAUUUUAUCUUCGUU	3	0.99999999216637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN529_c0_g1_1385_TPlot.pdf
TRINITY_DN529_c0_g1:1526	si_a636	TRINITY_DN529_c0_g1	1514	1535	1526	-26.30	-17.40	0.661596958174905	6.5	1-9,1535-1527;11-15,1525-1521;16-20,1519-1515	10-10,1526-1526[SIL];x-x,1520-1520[BULt];21-21,1514-1514[UP3]	.(((((.(((((.(((((((((&))))))))).)))))-))))).	AAUUACUUUAGACGAAUCGACA&UGUCGAUUUUUUUGA-GUAAUA	3	0.999999997898661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN529_c0_g1_1526_TPlot.pdf
TRINITY_DN529_c0_g1:1527	si_a635	TRINITY_DN529_c0_g1	1515	1536	1527	-26.10	-18.10	0.693486590038314	5	1-10,1536-1527;12-16,1525-1521;17-21,1519-1515	11-11,1526-1526[SIL];x-x,1520-1520[BULt]	(((((.(((((.((((((((((&)))))))))).)))))-)))))	AUUACUUUAGACGAAUCGACAU&AUGUCGAUUUUUUUGA-GUAAU	2	0.999476415612255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN529_c0_g1_1527_TPlot.pdf
TRINITY_DN5300_c0_g1:393	si_s92	TRINITY_DN5300_c0_g1	382	408	393	-34.90	-23.10	0.66189111747851	15	2-8,407-401;9-14,394-389;16-21,387-382	1-1,408-408[UP5];x-x,400-395[BULt];15-15,388-388[SIL]	((((((.((((((......(((((((.&.)))))))------)))))).))))))	AUCCGACGCGAAGCCAAGAAAGAAGGG&UUCUUCUU------CUUCGCUUCGGAU	4	0.99999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5300_c0_g1_393_TPlot.pdf
TRINITY_DN5300_c0_g1:394	si_s91	TRINITY_DN5300_c0_g1	383	409	394	-34.70	-23.60	0.680115273775216	15	1-9,409-401;10-15,394-389;17-21,387-383	x-x,400-395[BULt];16-16,388-388[SIL]	(((((.((((((......(((((((((&)))))))))------)))))).)))))	UCCGACGCGAAGCCAAGAAAGAAGGGA&UUUCUUCUU------CUUCGCUUCGGA	3	0.999999999557893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5300_c0_g1_394_TPlot.pdf
TRINITY_DN5300_c0_g1:399	si_s88	TRINITY_DN5300_c0_g1	386	409	399	-34.80	-22.70	0.652298850574713	8	1-9,409-401;10-12,399-397;13-18,394-389;20-21,387-386	x-x,400-400[BULt];x-x,396-395[BULt];19-19,388-388[SIL]	((.((((((..(((.(((((((((&)))))))))-)))--)))))).))	GACGCGAAGCCAAGAAAGAAGGGA&UCCUUUCUU-CUU--CUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5300_c0_g1_399_TPlot.pdf
TRINITY_DN5300_c0_g1:401	si_s87	TRINITY_DN5300_c0_g1	387	410	401	-32.90	-22.70	0.689969604863222	7	1-10,410-401;11-13,399-397;14-19,394-389	x-x,400-400[BULt];x-x,396-395[BULt];20-21,388-387[UP3]	..((((((..(((.((((((((((&))))))))))-)))--))))))..	ACGCGAAGCCAAGAAAGAAGGGAA&UUCCUUUCUU-CUU--CUUCGCUU	4	0.999999999999943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5300_c0_g1_401_TPlot.pdf
TRINITY_DN5300_c0_g1:402	si_s86	TRINITY_DN5300_c0_g1	388	411	402	-32.90	-23.10	0.702127659574468	6.5	1-11,411-401;12-14,399-397;15-20,394-389	x-x,400-400[BULt];x-x,396-395[BULt];21-21,388-388[UP3]	.((((((..(((.(((((((((((&)))))))))))-)))--)))))).	CGCGAAGCCAAGAAAGAAGGGAAG&UUUCCUUUCUU-CUU--CUUCGCU	3	0.999999999857706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5300_c0_g1_402_TPlot.pdf
TRINITY_DN5300_c0_g1:453	si_a43	TRINITY_DN5300_c0_g1	442	462	453	-42.30	-27.60	0.652482269503546	8.5	2-3,461-460;5-14,458-449;16-19,447-444	1-1,462-462[UP5];4-4,459-459[SIL];15-15,448-448[SIL];20-21,443-442[UP3]	..((((.((((((((((.((.&.)).)))))))))).))))..	CAGAUUGCUGGACCUGCGGGA&ACCGGUAGGUCUAGGAGUCGA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN5300_c0_g1_453_TPlot.pdf
TRINITY_DN53012_c0_g1:170	si_s84	TRINITY_DN53012_c0_g1	157	180	170	-32.30	-23.00	0.712074303405573	5.5	1-6,180-175;7-16,173-164;17-20,161-158	x-x,174-174[BULt];x-x,163-162[BULt];21-21,157-157[UP3]	.((((..((((((((((.((((((&))))))-))))))))))--)))).	AGAAGCGGAGAAGAAAGCGAAAGA&UCUUUC-CUUUCUUCUU--CUUCG	4	0.999999997079543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN53012_c0_g1_170_TPlot.pdf
TRINITY_DN53012_c0_g1:173	si_s81	TRINITY_DN53012_c0_g1	162	183	173	-28.90	-23.30	0.806228373702422	6.5	3-9,181-175;10-20,173-163	1-2,183-182[UP5];x-x,174-174[BULt];21-21,162-162[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	CGGAGAAGAAAGCGAAAGAAUC&UUUUCUUUC-CUUUCUUCUUCU	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN53012_c0_g1_173_TPlot.pdf
TRINITY_DN5301_c0_g1:102	si_s313	TRINITY_DN5301_c0_g1	92	111	102	-30.80	-22.10	0.717532467532468	10.5	6-12,106-100;14-21,99-92	1-5,111-107[UP5];13-13,x-x[BULq]	((((((((-(((((((.....&.....))))))).))))))))	GUAGCAAG-AGGACAGUUUAU&AAAUUCUGUCCUUCUUGUUAC	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN5301_c0_g1_102_TPlot.pdf
TRINITY_DN5301_c0_g1:299	si_a375	TRINITY_DN5301_c0_g1	288	307	299	-24.00	-15.90	0.6625	7	2-3,306-305;6-21,303-288	1-1,307-307[UP5];4-5,304-304[AILq]	((((((((((((((((.-((.&.))..))))))))))))))))	UGAUUCGGAAUUAUUUG-GAA&AUCAAAAAUGAUUUCGAAUUA	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN5301_c0_g1_299_TPlot.pdf
TRINITY_DN5302_c0_g1:186	si_s39	TRINITY_DN5302_c0_g1	175	195	186	-22.30	-14.70	0.659192825112108	11	5-8,191-188;11-21,185-175	1-4,195-192[UP5];9-10,187-186[SIL]	(((((((((((..((((....&....))))..)))))))))))	AAAUCCAAUUAGAAAAGGAGC&AAAUCUUUAAUAAUUGGAUUU	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN5302_c0_g1_186_TPlot.pdf
TRINITY_DN5303_c0_g1:1557	si_s76	TRINITY_DN5303_c0_g1	1544	1566	1557	-23.60	-17.10	0.724576271186441	13.5	3-11,1564-1556;12-20,1553-1545	1-2,1566-1565[UP5];x-x,1555-1554[BULt];21-21,1544-1544[UP3]	.(((((((((..(((((((((..&..)))))))))--))))))))).	CGGAAAGGAGUUGGAAGAGGAGA&AUUUUUUUUCU--UUCCUUUCUU	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5303_c0_g1_1557_TPlot.pdf
TRINITY_DN5303_c0_g1:1567	si_s69	TRINITY_DN5303_c0_g1	1556	1577	1567	-23.40	-17.00	0.726495726495727	9.5	3-7,1575-1571;9-21,1568-1556	1-2,1577-1576[UP5];8-8,1570-1569[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGAAGAGGAGAAAGAAGAAGCC&AACUUCU-AUUUUUUUUCUUUC	2	0.999999894860536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5303_c0_g1_1567_TPlot.pdf
TRINITY_DN5303_c0_g1:1568	si_s77	TRINITY_DN5303_c0_g1	1557	1577	1568	-25.50	-17.80	0.698039215686275	7	3-13,1575-1565;15-21,1563-1557	1-2,1577-1576[UP5];14-14,1564-1564[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GAAGAGGAGAAAGAAGAAGCC&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5303_c0_g1_1568_TPlot.pdf
TRINITY_DN5303_c0_g1:2069	si_s221	TRINITY_DN5303_c0_g1	2058	2080	2069	-35.40	-23.10	0.652542372881356	8	1-9,2080-2072;10-13,2069-2066;15-19,2064-2060;21-21,2058-2058	x-x,2071-2070[BULt];14-14,2065-2065[SIL];20-20,2059-2059[SIL]	(.(((((.((((..(((((((((&)))))))))--)))).))))).)	CGUUGUUGGCGUUUGGUUUCGAA&UUCGAAACC--GCGUGAAUAAGG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s221_TRINITY_DN5303_c0_g1_2069_TPlot.pdf
TRINITY_DN5304_c0_g1:1423	si_a64	TRINITY_DN5304_c0_g1	1412	1432	1423	-29.40	-20.70	0.704081632653061	8	2-17,1431-1416	1-1,1432-1432[UP5];18-21,1415-1412[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUAAAUUUGAGAGAGGUGAA&CUCGCUUCUUUCAAAUUGUUU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN5304_c0_g1_1423_TPlot.pdf
TRINITY_DN5304_c0_g1:1424	si_a63	TRINITY_DN5304_c0_g1	1413	1433	1424	-30.20	-20.70	0.685430463576159	9	3-18,1431-1416	1-2,1433-1432[UP5];19-21,1415-1413[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUAAAUUUGAGAGAGGUGAAU&ACUCGCUUCUUUCAAAUUGUU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN5304_c0_g1_1424_TPlot.pdf
TRINITY_DN5304_c0_g1:15	si_a307	TRINITY_DN5304_c0_g1	5	24	15	-33.00	-21.60	0.654545454545455	9	4-5,21-20;7-14,18-11;16-21,10-5	1-3,24-22[UP5];6-6,19-19[SIL];15-15,x-x[BULq]	((((((-((((((((.((...&...)).)))))))).))))))	GUGGAU-AGUCCAAGGGAUUG&GAUUCGCUUGGAUUUAUCCAU	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN5304_c0_g1_15_TPlot.pdf
TRINITY_DN5304_c0_g1:2457	si_s515	TRINITY_DN5304_c0_g1	2446	2465	2457	-24.80	-16.82	0.678225806451613	9	1-9,2465-2457;14-20,2453-2447	10-13,2456-2454[AILq];21-21,2446-2446[UP3]	.(((((((...-(((((((((&)))))))))....))))))).	CUUUCGAAGAU-GAAUGUAGA&UCUAUAUUCUUAAUUCGAAAU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN5304_c0_g1_2457_TPlot.pdf
TRINITY_DN5304_c0_g1:2469	si_s502	TRINITY_DN5304_c0_g1	2458	2478	2469	-22.40	-15.20	0.678571428571429	10	5-11,2474-2468;13-21,2466-2458	1-4,2478-2475[UP5];12-12,2467-2467[SIL]	(((((((((.(((((((....&....))))))).)))))))))	AAUGUAGAGAUGUUUUGAGAA&UAAACAAAACAAUUCUAUAUU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s502_TRINITY_DN5304_c0_g1_2469_TPlot.pdf
TRINITY_DN5304_c0_g1:2498	si_a318	TRINITY_DN5304_c0_g1	2487	2507	2498	-22.50	-16.60	0.737777777777778	7	1-9,2507-2499;11-19,2497-2489	10-10,2498-2498[SIL];20-21,2488-2487[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAGAGAAAAUUUUGGAUAGAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999687580080934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5304_c0_g1_2498_TPlot.pdf
TRINITY_DN5304_c1_g1:669	si_a486	TRINITY_DN5304_c1_g1	658	678	669	-24.90	-17.20	0.690763052208835	5	1-6,678-673;8-12,671-667;14-21,665-658	7-7,672-672[SIL];13-13,666-666[SIL]	((((((((.(((((.((((((&)))))).))))).))))))))	AAGACGACCUAUUCCGUAUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN5304_c1_g1_669_TPlot.pdf
TRINITY_DN5304_c1_g2:30	si_a784	TRINITY_DN5304_c1_g2	19	44	30	-24.70	-16.72	0.676923076923077	15	1-8,44-37;10-21,30-19	9-9,36-31[AILt]	((((((((((((......((((((((&))))))))-----.))))))))))))	AAAAUAGAAGGAGGAAAAAGAGGAGU&ACUCUUCU-----AUUUUUCUAUUUU	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5304_c1_g2_30_TPlot.pdf
TRINITY_DN5304_c1_g2:539	si_a633	TRINITY_DN5304_c1_g2	528	549	539	-26.40	-17.20	0.651515151515151	8	2-6,548-544;7-20,542-529	1-1,549-549[UP5];x-x,543-543[BULt];21-21,528-528[UP3]	.((((((((((((((.(((((.&.)))))-)))))))))))))).	GAUUCGAAAGGAUUGAACAUAU&UUAUGU-CGAUUUUUUUGAGUA	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5304_c1_g2_539_TPlot.pdf
TRINITY_DN5305_c0_g2:510	si_s578	TRINITY_DN5305_c0_g2	499	519	510	-27.00	-20.90	0.774074074074074	5	2-15,518-505;17-19,503-501	1-1,519-519[UP5];16-16,504-504[SIL];20-21,500-499[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	UCCCAAGAUUUUUUUGUUCCG&AGGAAUAAAAAAAUCAUGGAU	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s578_TRINITY_DN5305_c0_g2_510_TPlot.pdf
TRINITY_DN5305_c0_g2:512	si_s576	TRINITY_DN5305_c0_g2	501	521	512	-27.50	-20.10	0.730909090909091	7	4-17,518-505;19-21,503-501	1-3,521-519[UP5];18-18,504-504[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	CCAAGAUUUUUUUGUUCCGCU&CAAGGAAUAAAAAAAUCAUGG	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s576_TRINITY_DN5305_c0_g2_512_TPlot.pdf
TRINITY_DN5305_c1_g1:163	si_a474	TRINITY_DN5305_c1_g1	152	172	163	-23.60	-16.00	0.677966101694915	6.5	1-2,172-171;4-18,169-155	3-3,170-170[SIL];19-21,154-152[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	ACAAUGUAACAAUAGUUAGAU&AUGUAAUUAUUGUUAUAUAGA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN5305_c1_g1_163_TPlot.pdf
TRINITY_DN5305_c1_g1:39	si_s812	TRINITY_DN5305_c1_g1	28	47	39	-26.40	-19.20	0.727272727272727	7.5	1-5,47-43;7-20,42-29	6-6,x-x[BULq];21-21,28-28[UP3]	.((((((((((((((-(((((&))))).)))))))))))))).	CUUGUUAGGGGAAGG-GACGG&UCGUUACCUUUUCUUAAUAAU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN5305_c1_g1_39_TPlot.pdf
TRINITY_DN53065_c0_g1:275	si_s614	TRINITY_DN53065_c0_g1	264	284	275	-28.30	-19.10	0.674911660777385	5.5	1-6,284-279;8-19,277-266	7-7,278-278[SIL];20-21,265-264[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AAAUUGCUUGGAUUAAAAGAA&UUUUUUAAAUCCAAGCGAUCU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN53065_c0_g1_275_TPlot.pdf
TRINITY_DN53065_c0_g1:276	si_s613	TRINITY_DN53065_c0_g1	265	285	276	-29.20	-19.30	0.660958904109589	5.5	2-7,284-279;9-20,277-266	1-1,285-285[UP5];8-8,278-278[SIL];21-21,265-265[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AAUUGCUUGGAUUAAAAGAAA&CUUUUUUAAAUCCAAGCGAUC	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN53065_c0_g1_276_TPlot.pdf
TRINITY_DN5308_c0_g1:3840	si_a820	TRINITY_DN5308_c0_g1	3829	3849	3840	-28.20	-19.70	0.698581560283688	6.5	1-7,3849-3843;10-19,3840-3831	8-9,3842-3841[SIL];20-21,3830-3829[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	UAUUUCUUUCCUAACUUCUUU&GAAGAAGAAAGGAAAGAAAAA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN5308_c0_g1_3840_TPlot.pdf
TRINITY_DN5308_c0_g1:4654	si_a418	TRINITY_DN5308_c0_g1	4639	4663	4654	-21.20	-16.90	0.797169811320755	8.5	1-10,4663-4654;11-21,4649-4639	x-x,4653-4650[BULt]	(((((((((((....((((((((((&))))))))))----)))))))))))	GUCCUAUAUUUUACCAUUUAAAUAU&AUAUUUAAAU----AAAUAUAGGAU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN5308_c0_g1_4654_TPlot.pdf
TRINITY_DN5308_c0_g1:4656	si_a416	TRINITY_DN5308_c0_g1	4641	4665	4656	-20.50	-15.80	0.770731707317073	8	1-12,4665-4654;13-21,4649-4641	x-x,4653-4650[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	CCUAUAUUUUACCAUUUAAAUAUAA&UUAUAUUUAAAU----AAAUAUAGG	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN5308_c0_g1_4656_TPlot.pdf
TRINITY_DN5308_c0_g1:4657	si_a415	TRINITY_DN5308_c0_g1	4642	4666	4657	-18.10	-13.10	0.723756906077348	4.5	1-13,4666-4654;14-21,4649-4642	x-x,4653-4650[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	CUAUAUUUUACCAUUUAAAUAUAAG&UUUAUAUUUAAAU----AAAUAUAG	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN5308_c0_g1_4657_TPlot.pdf
TRINITY_DN5308_c0_g1:5060	si_a459	TRINITY_DN5308_c0_g1	5049	5069	5060	-23.20	-17.70	0.762931034482759	5.5	2-18,5068-5052	1-1,5069-5069[UP5];19-21,5051-5049[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACUCAUGUUAUAUAUAACAGA&GUUGUUAUAUAUAAUAUGUAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN5308_c0_g1_5060_TPlot.pdf
TRINITY_DN5308_c0_g1:5062	si_a457	TRINITY_DN5308_c0_g1	5051	5071	5062	-23.50	-17.70	0.753191489361702	7.5	4-20,5068-5052	1-3,5071-5069[UP5];21-21,5051-5051[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UCAUGUUAUAUAUAACAGAAA&UUGUUGUUAUAUAUAAUAUGU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN5308_c0_g1_5062_TPlot.pdf
TRINITY_DN5308_c0_g1:5064	si_a455	TRINITY_DN5308_c0_g1	5053	5073	5064	-21.10	-15.00	0.710900473933649	10.5	6-21,5068-5053	1-5,5073-5069[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGUUAUAUAUAACAGAAAAU&AAUUGUUGUUAUAUAUAAUAU	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN5308_c0_g1_5064_TPlot.pdf
TRINITY_DN53090_c0_g1:211	si_a641	TRINITY_DN53090_c0_g1	200	220	211	-23.60	-15.40	0.652542372881356	15.5	8-10,213-211;12-21,209-200	1-7,220-214[UP5];11-11,210-210[SIL]	((((((((((.(((.......&.......))).))))))))))	CGAUAUGUUAGUCAUUAUUUA&AUUUUUUUGAGUAAUAUAUCG	2	0.999606753440389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN53090_c0_g1_211_TPlot.pdf
TRINITY_DN53090_c0_g1:223	si_s484	TRINITY_DN53090_c0_g1	212	233	223	-20.50	-14.70	0.717073170731707	8	1-5,233-229;6-18,227-215	x-x,228-228[BULt];19-21,214-212[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	CAUUAUUUAAAUGGGUGAUAGG&CCUAU-AUUUAUUUAAAUAUAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN53090_c0_g1_223_TPlot.pdf
TRINITY_DN53090_c0_g1:224	si_s483	TRINITY_DN53090_c0_g1	213	234	224	-21.40	-14.90	0.696261682242991	7.5	1-6,234-229;7-19,227-215	x-x,228-228[BULt];20-21,214-213[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	AUUAUUUAAAUGGGUGAUAGGG&UCCUAU-AUUUAUUUAAAUAUA	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN53090_c0_g1_224_TPlot.pdf
TRINITY_DN53098_c0_g1:333	si_s536	TRINITY_DN53098_c0_g1	321	345	333	-27.70	-18.62	0.672202166064982	11	1-4,345-342;7-14,336-329;15-21,327-321	5-6,341-337[AILt];x-x,328-328[BULt]	(((((((.((((((((.....((((&))))---..))))))))-)))))))	AUUUUGACUCGGAUCACUUUUAAUG&CAUU---UUUGAUCCGA-UCAAAAU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN53098_c0_g1_333_TPlot.pdf
TRINITY_DN530_c0_g1:1331	si_s809	TRINITY_DN530_c0_g1	1319	1340	1331	-28.50	-18.70	0.656140350877193	11	1-11,1340-1330;12-16,1328-1324	x-x,1329-1329[BULt];17-21,1323-1319[UP3]	.....(((((.(((((((((((&)))))))))))-))))).....	GUGGUGAAGGCGGUGGCGAAGG&UCUUCGUUACC-UUUUCUUAAU	4	0.9999999999757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN530_c0_g1_1331_TPlot.pdf
TRINITY_DN530_c0_g1:1808	si_a420	TRINITY_DN530_c0_g1	1797	1817	1808	-25.00	-16.60	0.664	3.5	1-9,1817-1809;11-16,1807-1802;18-21,1800-1797	10-10,1808-1808[SIL];17-17,1801-1801[SIL]	((((.((((((.(((((((((&))))))))).)))))).))))	GGAUGUUAUAUAUAUUUAAAU&AUUUAAAUAAAUAUAGGAUCC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN530_c0_g1_1808_TPlot.pdf
TRINITY_DN530_c0_g1:1813	si_a415	TRINITY_DN530_c0_g1	1802	1822	1813	-18.10	-12.90	0.712707182320442	3.5	2-14,1821-1809;16-21,1807-1802	1-1,1822-1822[UP5];15-15,1808-1808[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	UUAUAUAUAUUUAAAUAUGAU&UUUAUAUUUAAAUAAAUAUAG	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN530_c0_g1_1813_TPlot.pdf
TRINITY_DN530_c0_g1:1892	si_s774	TRINITY_DN530_c0_g1	1881	1902	1892	-24.70	-16.10	0.651821862348178	8.5	1-8,1902-1895;9-17,1893-1885	x-x,1894-1894[BULt];18-21,1884-1881[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	UUCGUGUGGCAAUAAGUGAUUG&UAAUUACU-AUUGCUAUAAAAC	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN530_c0_g1_1892_TPlot.pdf
TRINITY_DN530_c0_g1:2276	si_s111	TRINITY_DN530_c0_g1	2264	2286	2276	-24.80	-18.00	0.725806451612903	4.5	1-4,2286-2283;5-16,2281-2270;17-21,2268-2264	x-x,2282-2282[BULt];x-x,2269-2269[BULt]	(((((.((((((((((((.((((&))))-))))))))))))-)))))	UCUGUAUUUUCUAUUUUCUCGAU&AUUG-GAAAAUAGAAAA-AUAGA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s111_TRINITY_DN530_c0_g1_2276_TPlot.pdf
TRINITY_DN530_c0_g1:2277	si_s110	TRINITY_DN530_c0_g1	2265	2287	2277	-25.80	-19.80	0.767441860465116	4.5	1-5,2287-2283;6-17,2281-2270;18-21,2268-2265	x-x,2282-2282[BULt];x-x,2269-2269[BULt]	((((.((((((((((((.(((((&)))))-))))))))))))-))))	CUGUAUUUUCUAUUUUCUCGAUC&GAUUG-GAAAAUAGAAAA-AUAG	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s110_TRINITY_DN530_c0_g1_2277_TPlot.pdf
TRINITY_DN530_c0_g1:2278	si_s109	TRINITY_DN530_c0_g1	2267	2288	2278	-26.50	-18.00	0.679245283018868	7	2-6,2287-2283;7-18,2281-2270	1-1,2288-2288[UP5];x-x,2282-2282[BULt];19-21,2269-2267[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	GUAUUUUCUAUUUUCUCGAUCA&GGAUUG-GAAAAUAGAAAAAUA	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN530_c0_g1_2278_TPlot.pdf
TRINITY_DN530_c0_g1:2279	si_s108	TRINITY_DN530_c0_g1	2268	2289	2279	-27.60	-18.00	0.652173913043478	8	3-7,2287-2283;8-19,2281-2270	1-2,2289-2288[UP5];x-x,2282-2282[BULt];20-21,2269-2268[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	UAUUUUCUAUUUUCUCGAUCAC&CGGAUUG-GAAAAUAGAAAAAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN530_c0_g1_2279_TPlot.pdf
TRINITY_DN530_c1_g1:627	si_a327	TRINITY_DN530_c1_g1	616	639	627	-28.40	-18.94	0.666901408450704	11.5	1-8,639-632;10-15,627-622;17-21,620-616	9-9,631-628[AILt];16-16,621-621[SIL]	(((((.((((((....((((((((&))))))))---.)))))).)))))	GGACAUGGGAUAUGCUAGAGAUCA&UGAUUUUU---UUAUUCCUUGUCC	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN530_c1_g1_627_TPlot.pdf
TRINITY_DN530_c1_g1:770	si_a75	TRINITY_DN530_c1_g1	759	779	770	-21.30	-14.60	0.685446009389671	8.5	1-2,779-778;4-16,776-764	3-3,777-777[SIL];17-21,763-759[UP3]	.....(((((((((((((.((&)).))))))))))))).....	GUGUAGAUGAAAGACAAUCUG&CAAAUUGUUUUUCAUUAUUAA	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN530_c1_g1_770_TPlot.pdf
TRINITY_DN530_c1_g1:771	si_a74	TRINITY_DN530_c1_g1	760	780	771	-22.20	-16.00	0.720720720720721	7.5	1-3,780-778;5-17,776-764	4-4,777-777[SIL];18-21,763-760[UP3]	....(((((((((((((.(((&))).)))))))))))))....	UGUAGAUGAAAGACAAUCUGA&UCAAAUUGUUUUUCAUUAUUA	2	0.988531686919518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN530_c1_g1_771_TPlot.pdf
TRINITY_DN530_c1_g1:772	si_a73	TRINITY_DN530_c1_g1	761	781	772	-21.90	-16.20	0.73972602739726	7.5	2-4,780-778;6-18,776-764	1-1,781-781[UP5];5-5,777-777[SIL];19-21,763-761[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	GUAGAUGAAAGACAAUCUGAU&UUCAAAUUGUUUUUCAUUAUU	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN530_c1_g1_772_TPlot.pdf
TRINITY_DN530_c1_g1:773	si_a72	TRINITY_DN530_c1_g1	762	782	773	-21.90	-16.20	0.73972602739726	8.5	3-5,780-778;7-19,776-764	1-2,782-781[UP5];6-6,777-777[SIL];20-21,763-762[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	UAGAUGAAAGACAAUCUGAUA&UUUCAAAUUGUUUUUCAUUAU	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN530_c1_g1_773_TPlot.pdf
TRINITY_DN530_c1_g1:774	si_a71	TRINITY_DN530_c1_g1	763	783	774	-23.30	-16.20	0.695278969957081	9	4-6,780-778;8-20,776-764	1-3,783-781[UP5];7-7,777-777[SIL];21-21,763-763[UP3]	.(((((((((((((.(((...&...))).))))))))))))).	AGAUGAAAGACAAUCUGAUAC&CUUUCAAAUUGUUUUUCAUUA	4	0.999999306351614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN530_c1_g1_774_TPlot.pdf
TRINITY_DN530_c1_g1:775	si_a70	TRINITY_DN530_c1_g1	764	784	775	-23.90	-15.70	0.656903765690377	10	5-7,780-778;9-21,776-764	1-4,784-781[UP5];8-8,777-777[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GAUGAAAGACAAUCUGAUACA&UCUUUCAAAUUGUUUUUCAUU	2	0.999999968168467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN530_c1_g1_775_TPlot.pdf
TRINITY_DN530_c1_g1:969	si_a502	TRINITY_DN530_c1_g1	956	978	969	-32.10	-21.80	0.679127725856698	11	1-7,978-972;9-15,970-964;16-18,961-959	8-8,971-971[SIL];x-x,963-962[BULt];19-21,958-956[UP3]	...(((..(((((((.(((((((&))))))).)))))))--)))...	GAACCAGCAGGAGGAGGAGGAGC&GUUUUUCGUCUUCCU--UGGAAU	2	0.999992104080873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN530_c1_g1_969_TPlot.pdf
TRINITY_DN530_c1_g1:970	si_a501	TRINITY_DN530_c1_g1	957	979	970	-33.50	-22.20	0.662686567164179	11	2-8,978-972;10-16,970-964;17-19,961-959	1-1,979-979[UP5];9-9,971-971[SIL];x-x,963-962[BULt];20-21,958-957[UP3]	..(((..(((((((.(((((((.&.))))))).)))))))--)))..	AACCAGCAGGAGGAGGAGGAGCU&CGUUUUUCGUCUUCCU--UGGAA	4	0.999999999982535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN530_c1_g1_970_TPlot.pdf
TRINITY_DN5311_c0_g1:39	si_a757	TRINITY_DN5311_c0_g1	28	48	39	-33.10	-21.80	0.658610271903323	5.5	2-12,47-37;14-21,35-28	1-1,48-48[UP5];13-13,36-36[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	GGUUAAAAUUUCAAAGGAGGA&ACCUCCUUUGGGUUUUUGAUU	3	0.999999998855167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5311_c0_g1_39_TPlot.pdf
TRINITY_DN53140_c0_g1:222	si_a783	TRINITY_DN53140_c0_g1	212	230	222	-24.70	-16.10	0.651821862348178	8	1-9,230-222;12-18,221-215	10-11,x-x[BULq];19-21,214-212[UP3]	...(((((((--(((((((((&)))))))))..)))))))...	UGUUGGAAGA--AGAAGAGUU&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN53140_c0_g1_222_TPlot.pdf
TRINITY_DN5315_c0_g1:1124	si_a123	TRINITY_DN5315_c0_g1	1113	1133	1124	-26.60	-17.30	0.650375939849624	7.5	2-7,1132-1127;9-18,1125-1116	1-1,1133-1133[UP5];8-8,1126-1126[SIL];19-21,1115-1113[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UUUCUGUUGCUAUCAAACAGA&CUUGUUUUAUAGCAAUAGUAA	2	0.996484422847179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN5315_c0_g1_1124_TPlot.pdf
TRINITY_DN5315_c0_g1:1125	si_a122	TRINITY_DN5315_c0_g1	1114	1135	1125	-29.00	-20.20	0.696551724137931	6.5	1-3,1135-1133;4-8,1131-1127;10-19,1125-1116	x-x,1132-1132[BULt];9-9,1126-1126[SIL];20-21,1115-1114[UP3]	..((((((((((.(((((.(((&)))-))))).))))))))))..	UUCUGUUGCUAUCAAACAGAGC&GCU-UGUUUUAUAGCAAUAGUA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN5315_c0_g1_1125_TPlot.pdf
TRINITY_DN5315_c0_g1:1127	si_a120	TRINITY_DN5315_c0_g1	1116	1137	1127	-30.50	-20.00	0.655737704918033	7.5	3-5,1135-1133;6-10,1131-1127;12-21,1125-1116	1-2,1137-1136[UP5];x-x,1132-1132[BULt];11-11,1126-1126[SIL]	((((((((((.(((((.(((..&..)))-))))).))))))))))	CUGUUGCUAUCAAACAGAGCGU&GAGCU-UGUUUUAUAGCAAUAG	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN5315_c0_g1_1127_TPlot.pdf
TRINITY_DN5315_c0_g1:272	si_a76	TRINITY_DN5315_c0_g1	262	281	272	-21.20	-16.30	0.768867924528302	6	3-12,279-270;14-21,269-262	1-2,281-280[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	CUUAGUAG-GAAAAGCAAUAC&AAAUUGUUUUUCAUUAUUAAG	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN5315_c0_g1_272_TPlot.pdf
TRINITY_DN531_c0_g1:304	si_a119	TRINITY_DN531_c0_g1	294	313	304	-30.30	-19.80	0.653465346534653	7.5	1-11,313-303;13-14,302-301;16-20,299-295	12-12,x-x[BULq];15-15,300-300[SIL];21-21,294-294[UP3]	.(((((.((-(((((((((((&))))))))))).)).))))).	AGUUGCCAU-GAGCAAGUUCG&CGAGCUUGUUUUAUAGCAAUA	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN531_c0_g1_304_TPlot.pdf
TRINITY_DN531_c0_g1:674	si_s604	TRINITY_DN531_c0_g1	663	682	674	-26.80	-17.50	0.652985074626866	6.5	3-5,680-678;7-21,677-663	1-2,682-681[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GGUUUAAAAAAGGUU-GCUGU&CAAGCGAAUCUUUUUUAAAUC	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s604_TRINITY_DN531_c0_g1_674_TPlot.pdf
TRINITY_DN5320_c0_g1:1148	si_a783	TRINITY_DN5320_c0_g1	1137	1157	1148	-24.70	-16.30	0.659919028340081	9.5	2-15,1156-1143	1-1,1157-1157[UP5];16-21,1142-1137[UP3]	......((((((((((((((.&.))))))))))))))......	UUCUCAAGAAGUGGAAGAGUC&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5320_c0_g1_1148_TPlot.pdf
TRINITY_DN5320_c0_g1:2586	si_a482	TRINITY_DN5320_c0_g1	2575	2595	2586	-26.70	-19.20	0.719101123595506	7.5	2-10,2594-2586;13-21,2583-2575	1-1,2595-2595[UP5];11-12,2585-2584[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	CGAUAUAUUGAGUAUAGCAAA&AUUGUUAUAUAGAAUAUGUCG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN5320_c0_g1_2586_TPlot.pdf
TRINITY_DN5323_c0_g1:566	si_a503	TRINITY_DN5323_c0_g1	555	575	566	-32.10	-21.50	0.669781931464174	8	2-13,574-563;16-17,560-559	1-1,575-575[UP5];14-15,562-561[SIL];18-21,558-555[UP3]	....((..((((((((((((.&.))))))))))))..))....	GUCACCUUGGAGGACGAAAAU&UUUUUCGUCUUCCUUGGAAUG	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN5323_c0_g1_566_TPlot.pdf
TRINITY_DN5323_c0_g1:568	si_a501	TRINITY_DN5323_c0_g1	557	583	568	-33.50	-21.90	0.653731343283582	18	1-4,583-580;5-15,573-563;18-19,560-559	x-x,579-574[BULt];16-17,562-561[SIL];20-21,558-557[UP3]	..((..(((((((((((......((((&))))------)))))))))))..))..	CACCUUGGAGGACGAAAAUCUUCGACG&CGUU------UUUCGUCUUCCUUGGAA	3	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5323_c0_g1_568_TPlot.pdf
TRINITY_DN5323_c0_g1:570	si_a499	TRINITY_DN5323_c0_g1	559	582	570	-35.20	-25.14	0.714204545454545	10.5	1-4,582-579;6-17,574-563;20-21,560-559	5-5,578-575[AILt];18-19,562-561[SIL]	((..((((((((((((....((((&))))---.))))))))))))..))	CCUUGGAGGACGAAAAUCUUCGAC&GUCG---UUUUUCGUCUUCCUUGG	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5323_c0_g1_570_TPlot.pdf
TRINITY_DN5323_c0_g1:573	si_a496	TRINITY_DN5323_c0_g1	562	585	573	-32.40	-21.64	0.667901234567901	14.5	4-7,582-579;9-20,574-563	1-3,585-583[UP5];8-8,578-575[AILt];21-21,562-562[UP3]	.((((((((((((....((((...&...))))---.)))))))))))).	UGGAGGACGAAAAUCUUCGACGAG&UAUGUCG---UUUUUCGUCUUCCU	2	0.999999276253811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5323_c0_g1_573_TPlot.pdf
TRINITY_DN5323_c0_g1:574	si_a495	TRINITY_DN5323_c0_g1	563	586	574	-31.90	-21.24	0.665830721003135	15.5	5-8,582-579;10-21,574-563	1-4,586-583[UP5];9-9,578-575[AILt]	((((((((((((....((((....&....))))---.))))))))))))	GGAGGACGAAAAUCUUCGACGAGA&AUAUGUCG---UUUUUCGUCUUCC	2	0.999996067160338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5323_c0_g1_574_TPlot.pdf
TRINITY_DN5324_c0_g1:2895	si_s607	TRINITY_DN5324_c0_g1	2883	2904	2895	-27.60	-19.00	0.688405797101449	4.5	3-17,2902-2888;18-21,2886-2883	1-2,2904-2903[UP5];x-x,2887-2887[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	UUGGCGUUUAAAAAAGAUUCCU&GCGAAUCUUUUUUAAAU-CCAA	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN5324_c0_g1_2895_TPlot.pdf
TRINITY_DN5324_c0_g1:3773	si_a872	TRINITY_DN5324_c0_g1	3762	3783	3773	-27.00	-18.10	0.67037037037037	14.5	6-9,3778-3775;10-21,3773-3762	1-5,3783-3779[UP5];x-x,3774-3774[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	UGAUUGCGACUGUGGUCCUUUU&UUAAAGAUU-UAGUUGCAAUCA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN5324_c0_g1_3773_TPlot.pdf
TRINITY_DN5325_c0_g1:28	si_s808	TRINITY_DN5325_c0_g1	17	37	28	-28.60	-19.90	0.695804195804196	9.5	2-9,36-29;11-18,27-20	1-1,37-37[UP5];10-10,28-28[SIL];19-21,19-17[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	AAUGGAGGAGGAGACGGAGAC&AUCUUCGUUACCUUUUCUUAA	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5325_c0_g1_28_TPlot.pdf
TRINITY_DN5325_c0_g1:525	si_s91	TRINITY_DN5325_c0_g1	513	534	525	-34.70	-27.10	0.780979827089337	4	2-14,533-521;15-15,519-519;17-21,517-513	1-1,534-534[UP5];x-x,520-520[BULt];16-16,518-518[SIL]	(((((.(.(((((((((((((.&.)))))))))))))-).)))))	UCCGACGACGAAGAAGAGGAAG&UUUCUUCUUCUUCG-CUUCGGA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5325_c0_g1_525_TPlot.pdf
TRINITY_DN5325_c0_g1:526	si_s90	TRINITY_DN5325_c0_g1	514	535	526	-35.30	-25.60	0.725212464589235	5	2-15,534-521;16-16,519-519;18-21,517-514	1-1,535-535[UP5];x-x,520-520[BULt];17-17,518-518[SIL]	((((.(.((((((((((((((.&.))))))))))))))-).))))	CCGACGACGAAGAAGAGGAAGA&CUUUCUUCUUCUUCG-CUUCGG	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5325_c0_g1_526_TPlot.pdf
TRINITY_DN5325_c0_g1:527	si_s89	TRINITY_DN5325_c0_g1	515	540	527	-35.30	-23.70	0.671388101983003	12	1-4,540-537;5-16,532-521;17-17,519-519;19-21,517-515	x-x,536-533[BULt];x-x,520-520[BULt];18-18,518-518[SIL]	(((.(.((((((((((((....((((&))))----))))))))))))-).)))	CGACGACGAAGAAGAGGAAGAUGAGG&CCUU----UCUUCUUCUUCG-CUUCG	2	0.99999994631167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5325_c0_g1_527_TPlot.pdf
TRINITY_DN5325_c0_g1:528	si_s88	TRINITY_DN5325_c0_g1	516	541	528	-34.80	-23.10	0.663793103448276	12	1-5,541-537;6-17,532-521;18-18,519-519;20-21,517-516	x-x,536-533[BULt];x-x,520-520[BULt];19-19,518-518[SIL]	((.(.((((((((((((....(((((&)))))----))))))))))))-).))	GACGACGAAGAAGAGGAAGAUGAGGA&UCCUU----UCUUCUUCUUCG-CUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5325_c0_g1_528_TPlot.pdf
TRINITY_DN5325_c0_g1:530	si_s86	TRINITY_DN5325_c0_g1	519	543	530	-32.90	-22.40	0.680851063829787	15	3-7,541-537;8-19,532-521	1-2,543-542[UP5];x-x,536-533[BULt];20-21,520-519[UP3]	..((((((((((((....(((((..&..)))))----))))))))))))..	GACGAAGAAGAGGAAGAUGAGGACG&UUUCCUU----UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5325_c0_g1_530_TPlot.pdf
TRINITY_DN5326_c0_g1:1239	si_s495	TRINITY_DN5326_c0_g1	1228	1248	1239	-19.80	-13.70	0.691919191919192	8	1-9,1248-1240;11-17,1238-1232	10-10,1239-1239[SIL];18-21,1231-1228[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AACAGUUUUGUAUGUAUUUGA&UUAAAUAUAAACAAAACAAUU	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN5326_c0_g1_1239_TPlot.pdf
TRINITY_DN5326_c0_g1:1535	si_s19	TRINITY_DN5326_c0_g1	1523	1544	1535	-27.80	-22.10	0.794964028776978	3	1-12,1544-1533;14-15,1531-1530;16-21,1528-1523	13-13,1532-1532[SIL];x-x,1529-1529[BULt]	((((((.((.((((((((((((&)))))))))))).))-))))))	UAGUUGUCAUUCAAUGUAGUAA&UUACUAUAUUGAUUG-CAACUA	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN5326_c0_g1_1535_TPlot.pdf
TRINITY_DN5327_c0_g1:514	si_s603	TRINITY_DN5327_c0_g1	503	524	514	-27.20	-18.50	0.680147058823529	9.5	1-7,524-518;10-19,514-505	8-9,517-515[AILt];20-21,504-503[UP3]	..((((((((((...(((((((&)))))))-..))))))))))..	UGUUAAAGAAGAGGAUGCUUGG&CCAAGCG-AAUCUUUUUUAAAU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN5327_c0_g1_514_TPlot.pdf
TRINITY_DN53296_c0_g1:276	si_s579	TRINITY_DN53296_c0_g1	265	287	276	-26.70	-17.70	0.662921348314607	9	1-2,287-286;5-7,283-281;8-20,278-266	3-4,285-284[SIL];x-x,280-279[BULt];21-21,265-265[UP3]	.(((((((((((((..(((..((&))..)))--))))))))))))).	AAUCCAUGAUUUUUAGUUAGCCC&GGAAUAA--AAAAAUCAUGGAUA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN53296_c0_g1_276_TPlot.pdf
TRINITY_DN5332_c0_g1:1515	si_a412	TRINITY_DN5332_c0_g1	1504	1527	1515	-18.30	-13.70	0.748633879781421	9.5	1-8,1527-1520;9-21,1516-1504	x-x,1519-1517[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	UGUUUAUUUAGGUUUUAUGAACAA&UUGUUUAU---AUUUAAAUAAAUA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN5332_c0_g1_1515_TPlot.pdf
TRINITY_DN5333_c0_g1:1564	si_a847	TRINITY_DN5333_c0_g1	1553	1573	1564	-31.20	-20.28	0.65	12.5	3-7,1571-1567;11-20,1563-1554	1-2,1573-1572[UP5];8-10,1566-1564[SIL];21-21,1553-1553[UP3]	.((((((((((...(((((..&..)))))...)))))))))).	CGGAUUUCGAGAAUGCGGCCA&AAGUUGCUAACUUGAAAUCCA	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN5333_c0_g1_1564_TPlot.pdf
TRINITY_DN5333_c0_g1:1862	si_a668	TRINITY_DN5333_c0_g1	1850	1876	1862	-33.20	-22.20	0.668674698795181	16	1-6,1876-1871;7-15,1865-1857;16-19,1855-1852	x-x,1870-1866[BULt];x-x,1856-1856[BULt];20-21,1851-1850[UP3]	..((((.(((((((((.....((((((&))))))-----)))))))))-))))..	AAGAGUGGAGGAAUCAUCGUUGUGGGC&GCCUAU-----UGAUUCCUU-AUUCAC	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN5333_c0_g1_1862_TPlot.pdf
TRINITY_DN5333_c0_g1:1863	si_a667	TRINITY_DN5333_c0_g1	1851	1877	1863	-32.10	-22.30	0.694704049844237	16	2-7,1876-1871;8-16,1865-1857;17-20,1855-1852	1-1,1877-1877[UP5];x-x,1870-1866[BULt];x-x,1856-1856[BULt];21-21,1851-1851[UP3]	.((((.(((((((((.....((((((.&.))))))-----)))))))))-)))).	AGAGUGGAGGAAUCAUCGUUGUGGGCG&UGCCUAU-----UGAUUCCUU-AUUCA	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN5333_c0_g1_1863_TPlot.pdf
TRINITY_DN5333_c0_g1:1864	si_a666	TRINITY_DN5333_c0_g1	1852	1878	1864	-31.60	-21.80	0.689873417721519	17	3-8,1876-1871;9-17,1865-1857;18-21,1855-1852	1-2,1878-1877[UP5];x-x,1870-1866[BULt];x-x,1856-1856[BULt]	((((.(((((((((.....((((((..&..))))))-----)))))))))-))))	GAGUGGAGGAAUCAUCGUUGUGGGCGA&AUGCCUAU-----UGAUUCCUU-AUUC	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN5333_c0_g1_1864_TPlot.pdf
TRINITY_DN5333_c0_g1:1865	si_a665	TRINITY_DN5333_c0_g1	1854	1879	1865	-29.60	-19.80	0.668918918918919	20.5	4-9,1876-1871;10-18,1865-1857	1-3,1879-1877[UP5];x-x,1870-1866[BULt];19-21,1856-1854[UP3]	...(((((((((.....((((((...&...))))))-----)))))))))...	GUGGAGGAAUCAUCGUUGUGGGCGAG&AAUGCCUAU-----UGAUUCCUUAUU	2	0.994632443542017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN5333_c0_g1_1865_TPlot.pdf
TRINITY_DN5333_c0_g1:1871	si_a664	TRINITY_DN5333_c0_g1	1855	1880	1871	-29.60	-19.80	0.668918918918919	21.5	5-10,1876-1871;11-19,1865-1857	1-4,1880-1877[UP5];x-x,1870-1866[BULt];20-21,1856-1855[UP3]	..(((((((((.....((((((....&....))))))-----)))))))))..	UGGAGGAAUCAUCGUUGUGGGCGAGA&AAAUGCCUAU-----UGAUUCCUUAU	2	0.992394551209544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN5333_c0_g1_1871_TPlot.pdf
TRINITY_DN5333_c0_g1:2765	si_s78	TRINITY_DN5333_c0_g1	2753	2774	2765	-26.20	-17.70	0.675572519083969	6.5	2-13,2773-2762;15-18,2760-2757;19-21,2755-2753	1-1,2774-2774[UP5];14-14,2761-2761[SIL];x-x,2756-2756[BULt]	(((.((((.((((((((((((.&.)))))))))))).))))-)))	AGACGGAACGGAAAGAAGGGAU&UUUUUUUCUUUCCUUUCU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5333_c0_g1_2765_TPlot.pdf
TRINITY_DN5333_c0_g1:2767	si_s76	TRINITY_DN5333_c0_g1	2756	2776	2767	-23.60	-16.30	0.690677966101695	10.5	4-15,2773-2762;17-20,2760-2757	1-3,2776-2774[UP5];16-16,2761-2761[SIL];21-21,2756-2756[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	CGGAACGGAAAGAAGGGAUAC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5333_c0_g1_2767_TPlot.pdf
TRINITY_DN5333_c0_g1:2768	si_s75	TRINITY_DN5333_c0_g1	2757	2777	2768	-24.00	-16.30	0.679166666666667	11.5	5-16,2773-2762;18-21,2760-2757	1-4,2777-2774[UP5];17-17,2761-2761[SIL]	((((.((((((((((((....&....)))))))))))).))))	GGAACGGAAAGAAGGGAUACA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5333_c0_g1_2768_TPlot.pdf
TRINITY_DN5333_c0_g1:2828	si_s89	TRINITY_DN5333_c0_g1	2815	2837	2828	-35.30	-24.60	0.696883852691218	7	1-3,2837-2835;5-16,2833-2822;17-20,2819-2816	4-4,2834-2834[SIL];x-x,2821-2820[BULt];21-21,2815-2815[UP3]	.((((..((((((((((((.(((&))).))))))))))))--)))).	AGAAGACCGAAGAAGAAGGCGGG&CCUUUCUUCUUCUUCG--CUUCG	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5333_c0_g1_2828_TPlot.pdf
TRINITY_DN5333_c0_g1:2829	si_s88	TRINITY_DN5333_c0_g1	2816	2838	2829	-34.80	-25.80	0.741379310344828	6	1-4,2838-2835;6-17,2833-2822;18-21,2819-2816	5-5,2834-2834[SIL];x-x,2821-2820[BULt]	((((..((((((((((((.((((&)))).))))))))))))--))))	GAAGACCGAAGAAGAAGGCGGGA&UCCUUUCUUCUUCUUCG--CUUC	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5333_c0_g1_2829_TPlot.pdf
TRINITY_DN5333_c0_g1:2830	si_s87	TRINITY_DN5333_c0_g1	2819	2839	2830	-32.90	-23.80	0.723404255319149	7	1-5,2839-2835;7-18,2833-2822	6-6,2834-2834[SIL];19-21,2821-2819[UP3]	...((((((((((((.(((((&))))).))))))))))))...	GACCGAAGAAGAAGGCGGGAA&UUCCUUUCUUCUUCUUCGCUU	2	0.99986176428727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5333_c0_g1_2830_TPlot.pdf
TRINITY_DN5333_c0_g1:2833	si_s84	TRINITY_DN5333_c0_g1	2822	2842	2833	-32.30	-27.80	0.860681114551084	5.5	1-8,2842-2835;10-21,2833-2822	9-9,2834-2834[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	CGAAGAAGAAGGCGGGAAGGG&UCUUUCCUUUCUUCUUCUUCG	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5333_c0_g1_2833_TPlot.pdf
TRINITY_DN5333_c0_g1:444	si_a443	TRINITY_DN5333_c0_g1	433	454	444	-30.00	-19.92	0.664	10.5	1-3,454-452;7-15,447-439;17-21,437-433	4-6,451-448[AILt];16-16,438-438[SIL]	(((((.(((((((((....(((&)))-...))))))))).)))))	GCAACCAUUGUCUCAGGAGCCA&UGG-AUAUGAGAUAAUUGUUGU	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN5333_c0_g1_444_TPlot.pdf
TRINITY_DN5334_c0_g1:593	si_s436	TRINITY_DN5334_c0_g1	582	601	593	-19.60	-13.90	0.709183673469388	2.5	1-8,601-594;10-21,593-582	9-9,x-x[BULq]	((((((((((((-((((((((&)))))))).))))))))))))	UAUAUAUGAUAU-UAAUUAUU&AAUAAUUACAUAUUAUAUAUA	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN5334_c0_g1_593_TPlot.pdf
TRINITY_DN5336_c0_g1:2313	si_s87	TRINITY_DN5336_c0_g1	2302	2322	2313	-32.90	-22.40	0.680851063829787	11	1-4,2322-2319;6-8,2317-2315;11-19,2312-2304	5-5,2318-2318[SIL];9-10,2314-2313[SIL];20-21,2303-2302[UP3]	..(((((((((..(((.((((&)))).)))..)))))))))..	AUGCGAAGAGGUUGAGCGGGA&UUCCUUUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5336_c0_g1_2313_TPlot.pdf
TRINITY_DN5336_c0_g1:2314	si_s86	TRINITY_DN5336_c0_g1	2303	2323	2314	-32.90	-22.80	0.693009118541034	10	1-5,2323-2319;7-9,2317-2315;12-20,2312-2304	6-6,2318-2318[SIL];10-11,2314-2313[SIL];21-21,2303-2303[UP3]	.(((((((((..(((.(((((&))))).)))..))))))))).	UGCGAAGAGGUUGAGCGGGAG&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999999409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5336_c0_g1_2314_TPlot.pdf
TRINITY_DN5339_c0_g1:522	si_s40	TRINITY_DN5339_c0_g1	511	531	522	-24.30	-16.20	0.666666666666667	12	5-21,527-511	1-4,531-528[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGUUCAGUUGUUGAGAACU&AAUCUUUAAUAAUUGGAUUUC	4	0.999067011191199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN5339_c0_g1_522_TPlot.pdf
TRINITY_DN533_c0_g1:1660	si_s413	TRINITY_DN533_c0_g1	1649	1673	1660	-24.80	-19.20	0.774193548387097	10.5	1-7,1673-1667;8-21,1662-1649	x-x,1666-1663[BULt]	((((((((((((((....(((((((&)))))))----))))))))))))))	UGUGUAGGAUGUGUAUUGCGUUUUU&AAAAACG----ACAUAUUCUAUAUA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN533_c0_g1_1660_TPlot.pdf
TRINITY_DN533_c0_g1:1661	si_s412	TRINITY_DN533_c0_g1	1650	1674	1661	-26.40	-18.40	0.696969696969697	11.5	2-8,1673-1667;9-21,1662-1650	1-1,1674-1674[UP5];x-x,1666-1663[BULt]	(((((((((((((....(((((((.&.)))))))----)))))))))))))	GUGUAGGAUGUGUAUUGCGUUUUUA&GAAAAACG----ACAUAUUCUAUAU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s412_TRINITY_DN533_c0_g1_1661_TPlot.pdf
TRINITY_DN5343_c0_g1:3902	si_s600	TRINITY_DN5343_c0_g1	3891	3910	3902	-28.20	-18.50	0.656028368794326	7.5	2-9,3909-3902;12-20,3900-3892	1-1,3910-3910[UP5];10-11,3901-3901[AILq];21-21,3891-3891[UP3]	.(((((((((.-((((((((.&.))))))))..))))))))).	AGAAAAAGAUA-GUUUGGAUG&AAUCCAAGCGAAUCUUUUUUA	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN5343_c0_g1_3902_TPlot.pdf
TRINITY_DN5343_c0_g1:479	si_a21	TRINITY_DN5343_c0_g1	467	491	479	-24.30	-15.90	0.654320987654321	11.5	1-9,491-483;10-14,479-475;15-19,473-469	x-x,482-480[BULt];x-x,474-474[BULt];20-21,468-467[UP3]	..(((((.(((((...(((((((((&)))))))))---)))))-)))))..	GAAGAGCAUAAAAAUUGUGAAUAGG&CCUAUUUAU---UUUUA-GUUCUAA	4	0.999999991631285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN5343_c0_g1_479_TPlot.pdf
TRINITY_DN5343_c0_g1:4846	si_a456	TRINITY_DN5343_c0_g1	4835	4855	4846	-22.80	-16.10	0.706140350877193	6	2-15,4854-4841;18-20,4838-4836	1-1,4855-4855[UP5];16-17,4840-4839[SIL];21-21,4835-4835[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	UGUGGGAUAUAUAACAGCAAA&AUUGUUGUUAUAUAUAAUAUG	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN5343_c0_g1_4846_TPlot.pdf
TRINITY_DN5343_c0_g1:4850	si_a452	TRINITY_DN5343_c0_g1	4839	4859	4850	-23.00	-15.30	0.665217391304348	12	6-19,4854-4841	1-5,4859-4855[UP5];20-21,4840-4839[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGAUAUAUAACAGCAAAACAU&GAUAAUUGUUGUUAUAUAUAA	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN5343_c0_g1_4850_TPlot.pdf
TRINITY_DN5343_c0_g1:4933	si_a347	TRINITY_DN5343_c0_g1	4916	4942	4933	-23.50	-15.80	0.672340425531915	16	1-10,4942-4933;11-20,4926-4917	x-x,4932-4927[BULt];21-21,4916-4916[UP3]	.((((((((((......((((((((((&))))))))))------)))))))))).	UAGUGGAAUUAUAUUUUGUAUUUUUGG&CCGAAAAUAU------UAAUUCUAUUU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN5343_c0_g1_4933_TPlot.pdf
TRINITY_DN5344_c0_g1:45	si_a356	TRINITY_DN5344_c0_g1	34	58	45	-26.90	-18.06	0.671375464684015	15.5	1-8,58-51;11-21,44-34	9-10,50-45[AILt]	(((((((((((......((((((((&))))))))----..)))))))))))	GUCCGGUCAAAUACCACAGGAUUGG&UUAAUUCU----AUUUUGAUCGGAU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN5344_c0_g1_45_TPlot.pdf
TRINITY_DN53483_c0_g1:81	si_a314	TRINITY_DN53483_c0_g1	69	90	81	-27.10	-18.30	0.675276752767528	4.5	1-11,90-80;13-16,78-75;17-21,73-69	12-12,79-79[SIL];x-x,74-74[BULt]	(((((.((((.(((((((((((&))))))))))).))))-)))))	AAAGACUCAUCGAUAGAUCCAA&UUGGAUUUAUCCAUGA-UUUUU	4	0.999985278941187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN53483_c0_g1_81_TPlot.pdf
TRINITY_DN5350_c0_g1:1135	si_a764	TRINITY_DN5350_c0_g1	1124	1144	1135	-28.90	-19.70	0.681660899653979	8.5	3-13,1142-1132;15-19,1130-1126	1-2,1144-1143[UP5];14-14,1131-1131[SIL];20-21,1125-1124[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	AAGAAUUUAUCAAGGACCCCA&UUGGGUUUUUGAUUGAUUCAA	3	0.999945552445062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN5350_c0_g1_1135_TPlot.pdf
TRINITY_DN5350_c0_g1:1136	si_a763	TRINITY_DN5350_c0_g1	1125	1145	1136	-28.80	-19.70	0.684027777777778	9.5	4-14,1142-1132;16-20,1130-1126	1-3,1145-1143[UP5];15-15,1131-1131[SIL];21-21,1125-1125[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	AGAAUUUAUCAAGGACCCCAG&UUUGGGUUUUUGAUUGAUUCA	4	0.999996933736392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN5350_c0_g1_1136_TPlot.pdf
TRINITY_DN5350_c0_g1:1294	si_a764	TRINITY_DN5350_c0_g1	1283	1303	1294	-28.90	-19.30	0.667820069204152	9	3-13,1301-1291;16-19,1288-1285	1-2,1303-1302[UP5];14-15,1290-1289[SIL];20-21,1284-1283[UP3]	..((((..(((((((((((..&..)))))))))))..))))..	AAGAAUAUAUCAAGGACCCCA&UUGGGUUUUUGAUUGAUUCAA	2	0.999927632264917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN5350_c0_g1_1294_TPlot.pdf
TRINITY_DN5350_c0_g1:1295	si_a763	TRINITY_DN5350_c0_g1	1284	1304	1295	-28.80	-19.30	0.670138888888889	10	4-14,1301-1291;17-20,1288-1285	1-3,1304-1302[UP5];15-16,1290-1289[SIL];21-21,1284-1284[UP3]	.((((..(((((((((((...&...)))))))))))..)))).	AGAAUAUAUCAAGGACCCCAG&UUUGGGUUUUUGAUUGAUUCA	3	0.999999982395045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN5350_c0_g1_1295_TPlot.pdf
TRINITY_DN5350_c0_g1:1379	si_s80	TRINITY_DN5350_c0_g1	1368	1388	1379	-28.20	-19.30	0.684397163120567	6.5	1-9,1388-1380;11-20,1378-1369	10-10,1379-1379[SIL];21-21,1368-1368[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CAAGAAGGAAGAGAAGAAGGA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5350_c0_g1_1379_TPlot.pdf
TRINITY_DN5350_c0_g1:1380	si_s79	TRINITY_DN5350_c0_g1	1369	1389	1380	-26.20	-19.70	0.751908396946565	6	1-10,1389-1380;12-21,1378-1369	11-11,1379-1379[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AAGAAGGAAGAGAAGAAGGAG&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999985555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5350_c0_g1_1380_TPlot.pdf
TRINITY_DN5350_c0_g1:1381	si_s70	TRINITY_DN5350_c0_g1	1370	1390	1381	-25.80	-18.20	0.705426356589147	8	2-6,1389-1385;8-20,1383-1371	1-1,1390-1390[UP5];7-7,1384-1384[SIL];21-21,1370-1370[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAAGGAAGAGAAGAAGGAGG&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999987207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5350_c0_g1_1381_TPlot.pdf
TRINITY_DN5350_c0_g1:1382	si_s69	TRINITY_DN5350_c0_g1	1371	1391	1382	-23.40	-18.20	0.777777777777778	9	3-7,1389-1385;9-21,1383-1371	1-2,1391-1390[UP5];8-8,1384-1384[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAGGAAGAGAAGAAGGAGGA&AACUUCUAUUUUUUUUCUUUC	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5350_c0_g1_1382_TPlot.pdf
TRINITY_DN5350_c0_g1:1383	si_s73	TRINITY_DN5350_c0_g1	1371	1391	1383	-24.00	-16.20	0.675	8	1-3,1391-1389;5-16,1388-1377;17-21,1375-1371	4-4,x-x[BULq];x-x,1376-1376[BULt]	(((((.((((((((((((-(((&))).))))))))))))-)))))	GAAGGAAGAGAAGAAGGA-GGA&UCUAUUUUUUUUCUUU-CCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5350_c0_g1_1383_TPlot.pdf
TRINITY_DN5350_c0_g1:1389	si_s82	TRINITY_DN5350_c0_g1	1378	1403	1389	-28.90	-18.80	0.650519031141869	15.5	1-2,1403-1402;4-8,1400-1396;9-21,1390-1378	3-3,1401-1401[SIL];x-x,1395-1391[BULt]	(((((((((((((.....(((((.((&)).)))))-----)))))))))))))	GAGAAGAAGGAGGAAUCCGAAAGUGA&UUUCUUUC-----CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5350_c0_g1_1389_TPlot.pdf
TRINITY_DN5350_c0_g1:1399	si_s41	TRINITY_DN5350_c0_g1	1388	1407	1399	-25.00	-16.42	0.6568	11	1-7,1407-1401;12-20,1397-1389	8-11,1400-1398[AILq];21-21,1388-1388[UP3]	.(((((((((...-(((((((&)))))))....))))))))).	AGGAAUCCGAAAG-UGAAGAU&AUCUUUAAUAAUUGGAUUUCA	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN5350_c0_g1_1399_TPlot.pdf
TRINITY_DN5350_c0_g1:1400	si_s40	TRINITY_DN5350_c0_g1	1389	1408	1400	-24.30	-16.22	0.667489711934156	11	2-8,1407-1401;13-21,1397-1389	1-1,1408-1408[UP5];9-12,1400-1398[AILq]	(((((((((...-(((((((.&.)))))))....)))))))))	GGAAUCCGAAAG-UGAAGAUG&AAUCUUUAAUAAUUGGAUUUC	2	0.984345763725476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN5350_c0_g1_1400_TPlot.pdf
TRINITY_DN5350_c0_g1:414	si_s406	TRINITY_DN5350_c0_g1	404	423	414	-29.50	-20.60	0.698305084745763	8	1-10,423-414;13-18,412-407	11-12,413-413[AILq];19-21,406-404[UP3]	...((((((.-((((((((((&))))))))))..))))))...	GCAAUGUCGG-UUUUGUCUUC&GAAGACGAAAAACGACAUAUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s406_TRINITY_DN5350_c0_g1_414_TPlot.pdf
TRINITY_DN5350_c0_g1:457	si_a113	TRINITY_DN5350_c0_g1	446	466	457	-26.20	-17.50	0.66793893129771	13.5	5-18,462-449	1-4,466-463[UP5];19-21,448-446[UP3]	...((((((((((((((....&....))))))))))))))...	UCAGGGACAAGCUUGUGGAAA&AAAAUACGAGCUUGUUUUAUA	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN5350_c0_g1_457_TPlot.pdf
TRINITY_DN5350_c0_g1:458	si_a112	TRINITY_DN5350_c0_g1	447	467	458	-26.20	-17.50	0.66793893129771	14.5	6-19,462-449	1-5,467-463[UP5];20-21,448-447[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAGGGACAAGCUUGUGGAAAA&UAAAAUACGAGCUUGUUUUAU	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN5350_c0_g1_458_TPlot.pdf
TRINITY_DN5350_c0_g1:459	si_a111	TRINITY_DN5350_c0_g1	448	468	459	-26.20	-17.50	0.66793893129771	15.5	7-20,462-449	1-6,468-463[UP5];21-21,448-448[UP3]	.((((((((((((((......&......)))))))))))))).	AGGGACAAGCUUGUGGAAAAC&AUAAAAUACGAGCUUGUUUUA	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN5350_c0_g1_459_TPlot.pdf
TRINITY_DN5350_c0_g1:517	si_s236	TRINITY_DN5350_c0_g1	506	528	517	-29.60	-19.60	0.662162162162162	12.5	4-9,525-520;10-18,517-509	1-3,528-526[UP5];x-x,519-518[BULt];19-21,508-506[UP3]	...(((((((((..((((((...&...))))))--)))))))))...	CAUUGCCUGUUGUUAUUCCUGCA&AUAAGGAAU--CAAUAGGCAUUU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN5350_c0_g1_517_TPlot.pdf
TRINITY_DN5350_c0_g1:520	si_s235	TRINITY_DN5350_c0_g1	507	529	520	-29.60	-19.60	0.662162162162162	13.5	5-10,525-520;11-19,517-509	1-4,529-526[UP5];x-x,519-518[BULt];20-21,508-507[UP3]	..(((((((((..((((((....&....))))))--)))))))))..	AUUGCCUGUUGUUAUUCCUGCAC&AAUAAGGAAU--CAAUAGGCAUU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s235_TRINITY_DN5350_c0_g1_520_TPlot.pdf
TRINITY_DN5350_c0_g1:924	si_s47	TRINITY_DN5350_c0_g1	913	933	924	-26.30	-17.10	0.650190114068441	13	6-19,928-915	1-5,933-929[UP5];20-21,914-913[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAGAUUUGAGAUCCAAAUUUU&AAUAAUUGGAUUUCAAGUUAG	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN5350_c0_g1_924_TPlot.pdf
TRINITY_DN5350_c0_g1:925	si_s46	TRINITY_DN5350_c0_g1	914	934	925	-25.00	-17.10	0.684	13.5	7-20,928-915	1-6,934-929[UP5];21-21,914-914[UP3]	.((((((((((((((......&......)))))))))))))).	AGAUUUGAGAUCCAAAUUUUU&UAAUAAUUGGAUUUCAAGUUA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN5350_c0_g1_925_TPlot.pdf
TRINITY_DN5350_c0_g1:926	si_s45	TRINITY_DN5350_c0_g1	915	935	926	-24.70	-16.60	0.672064777327935	14.5	8-21,928-915	1-7,935-929[UP5]	((((((((((((((.......&.......))))))))))))))	GAUUUGAGAUCCAAAUUUUUG&UUAAUAAUUGGAUUUCAAGUU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN5350_c0_g1_926_TPlot.pdf
TRINITY_DN5354_c0_g1:1978	si_a441	TRINITY_DN5354_c0_g1	1967	1987	1978	-29.30	-20.28	0.692150170648464	7.5	1-13,1987-1975;17-21,1971-1967	14-16,1974-1972[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	GGCAGGGUUCUCAUGUUCGAC&GUUGGAUAUGAGAUAAUUGUU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN5354_c0_g1_1978_TPlot.pdf
TRINITY_DN5354_c0_g1:3114	si_a113	TRINITY_DN5354_c0_g1	3103	3123	3114	-26.20	-17.30	0.66030534351145	16	7-17,3117-3107	1-6,3123-3118[UP5];18-21,3106-3103[UP3]	....(((((((((((......&......)))))))))))....	GGGUGAGCAAGCUCGGGCGGU&AAAAUACGAGCUUGUUUUAUA	4	0.999996933736392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN5354_c0_g1_3114_TPlot.pdf
TRINITY_DN5355_c1_g1:5010	si_s70	TRINITY_DN5355_c1_g1	4998	5019	5010	-25.80	-16.80	0.651162790697674	9	1-10,5019-5010;11-19,5008-5000	x-x,5009-5009[BULt];20-21,4999-4998[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	GUGAAGAGAGACGGAUGGAAGU&ACUUCUAUUU-UUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5355_c1_g1_5010_TPlot.pdf
TRINITY_DN5355_c1_g1:5012	si_s68	TRINITY_DN5355_c1_g1	5000	5021	5012	-23.10	-17.00	0.735930735930736	9.5	3-12,5019-5010;13-21,5008-5000	1-2,5021-5020[UP5];x-x,5009-5009[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GAAGAGAGACGGAUGGAAGUCA&CAACUUCUAUUU-UUUUUCUUU	3	0.999989219606595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5355_c1_g1_5012_TPlot.pdf
TRINITY_DN5355_c1_g1:5136	si_a784	TRINITY_DN5355_c1_g1	5125	5146	5136	-24.70	-16.30	0.659919028340081	7.5	3-9,5144-5138;11-21,5135-5125	1-2,5146-5145[UP5];10-10,5137-5136[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	AAAAUGGAAAAUUUAGAAGACG&ACUCUUCUA-UUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5355_c1_g1_5136_TPlot.pdf
TRINITY_DN5356_c0_g1:171	si_a225	TRINITY_DN5356_c0_g1	153	180	171	-27.50	-19.30	0.701818181818182	16	1-10,180-171;11-21,163-153	x-x,170-164[BULt]	(((((((((((.......((((((((((&))))))))))-------)))))))))))	UUGAUUAUAGAAUUACUUAAUAUGGGUU&AACUCAUGUU-------UCUAUAAUCAA	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN5356_c0_g1_171_TPlot.pdf
TRINITY_DN5358_c0_g1:2384	si_s86	TRINITY_DN5358_c0_g1	2373	2393	2384	-32.90	-21.70	0.659574468085106	5	2-5,2392-2389;7-16,2387-2378;19-21,2375-2373	1-1,2393-2393[UP5];6-6,2388-2388[SIL];17-18,2377-2376[SIL]	(((..((((((((((.((((.&.)))).))))))))))..)))	AGCUCAGAAGAAGAAUGGAAU&UUUCCUUUCUUCUUCUUCGCU	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5358_c0_g1_2384_TPlot.pdf
TRINITY_DN535_c0_g1:801	si_a18	TRINITY_DN535_c0_g1	790	811	801	-26.30	-17.90	0.680608365019011	8	3-8,809-804;9-15,802-796;18-21,793-790	1-2,811-810[UP5];x-x,803-803[BULt];16-17,795-794[SIL]	((((..(((((((.((((((..&..))))))-)))))))..))))	GAACGUAAAAUAGCAUAGGCAA&AAGCCUAU-UUAUUUUUAGUUC	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN535_c0_g1_801_TPlot.pdf
TRINITY_DN535_c0_g1:875	si_a322	TRINITY_DN535_c0_g1	864	883	875	-27.00	-18.10	0.67037037037037	8	1-5,883-879;7-9,878-876;12-21,873-864	6-6,x-x[BULq];10-11,875-874[SIL]	((((((((((..(((-(((((&))))).)))..))))))))))	AGGGGUAAAAUUAUC-UGGGU&AUCCAUGAUUUUUUUAUUCCU	3	0.999988774176646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN535_c0_g1_875_TPlot.pdf
TRINITY_DN5360_c0_g1:492	si_s773	TRINITY_DN5360_c0_g1	481	501	492	-23.10	-17.30	0.748917748917749	10.5	4-17,498-485	1-3,501-499[UP5];18-21,484-481[UP3]	....((((((((((((((...&...))))))))))))))....	GAAGAUGGCAAUGGUAAUAAA&UUAAUUACUAUUGCUAUAAAA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN5360_c0_g1_492_TPlot.pdf
TRINITY_DN5361_c0_g1:168	si_s312	TRINITY_DN5361_c0_g1	157	177	168	-29.00	-19.60	0.675862068965517	13	5-17,173-161	1-4,177-174[UP5];18-21,160-157[UP3]	....(((((((((((((....&....)))))))))))))....	CUUGGAGGAGGGCAGAAAUUU&AAAAUUCUGUCCUUCUUGUUA	4	0.999999992757229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN5361_c0_g1_168_TPlot.pdf
TRINITY_DN5361_c0_g1:171	si_s309	TRINITY_DN5361_c0_g1	160	181	171	-33.80	-22.90	0.677514792899408	7.5	1-2,181-180;3-6,178-175;8-20,173-161	x-x,179-179[BULt];7-7,174-174[SIL];21-21,160-160[UP3]	.(((((((((((((.((((.((&))-)))).))))))))))))).	GGAGGAGGGCAGAAAUUUUAGC&GC-GAAAAUUCUGUCCUUCUUG	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN5361_c0_g1_171_TPlot.pdf
TRINITY_DN5361_c0_g1:172	si_s308	TRINITY_DN5361_c0_g1	161	182	172	-32.80	-22.90	0.698170731707317	7.5	2-3,181-180;4-7,178-175;9-21,173-161	1-1,182-182[UP5];x-x,179-179[BULt];8-8,174-174[SIL]	(((((((((((((.((((.((.&.))-)))).)))))))))))))	GAGGAGGGCAGAAAUUUUAGCG&UGC-GAAAAUUCUGUCCUUCUU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN5361_c0_g1_172_TPlot.pdf
TRINITY_DN5361_c0_g1:173	si_s307	TRINITY_DN5361_c0_g1	162	183	173	-32.90	-23.10	0.702127659574468	7	1-4,183-180;5-8,178-175;10-21,173-162	x-x,179-179[BULt];9-9,174-174[SIL]	((((((((((((.((((.((((&))))-)))).))))))))))))	AGGAGGGCAGAAAUUUUAGCGA&UUGC-GAAAAUUCUGUCCUUCU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN5361_c0_g1_173_TPlot.pdf
TRINITY_DN5361_c0_g1:174	si_s306	TRINITY_DN5361_c0_g1	163	184	174	-32.30	-21.80	0.674922600619195	8	2-5,183-180;6-9,178-175;11-21,173-163	1-1,184-184[UP5];x-x,179-179[BULt];10-10,174-174[SIL]	(((((((((((.((((.((((.&.))))-)))).)))))))))))	GGAGGGCAGAAAUUUUAGCGAG&AUUGC-GAAAAUUCUGUCCUUC	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN5361_c0_g1_174_TPlot.pdf
TRINITY_DN5361_c0_g1:190	si_a285	TRINITY_DN5361_c0_g1	178	199	190	-28.30	-20.00	0.706713780918728	10.5	2-11,198-189;12-16,187-183	1-1,199-199[UP5];x-x,188-188[BULt];17-21,182-178[UP3]	.....(((((.((((((((((.&.))))))))))-))))).....	UAGCGAGAUCUCGAGCGGUCUG&AAGAUCGCUUG-GAUUUAAAAA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN5361_c0_g1_190_TPlot.pdf
TRINITY_DN5361_c0_g1:191	si_a284	TRINITY_DN5361_c0_g1	179	200	191	-28.30	-20.00	0.706713780918728	11.5	3-12,198-189;13-17,187-183	1-2,200-199[UP5];x-x,188-188[BULt];18-21,182-179[UP3]	....(((((.((((((((((..&..))))))))))-)))))....	AGCGAGAUCUCGAGCGGUCUGU&AAAGAUCGCUUG-GAUUUAAAA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN5361_c0_g1_191_TPlot.pdf
TRINITY_DN5361_c0_g1:192	si_a283	TRINITY_DN5361_c0_g1	180	201	192	-28.30	-20.00	0.706713780918728	11.5	4-13,198-189;14-18,187-183	1-3,201-199[UP5];x-x,188-188[BULt];19-21,182-180[UP3]	...(((((.((((((((((...&...))))))))))-)))))...	GCGAGAUCUCGAGCGGUCUGUC&AAAAGAUCGCUUG-GAUUUAAA	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN5361_c0_g1_192_TPlot.pdf
TRINITY_DN5361_c0_g1:194	si_a281	TRINITY_DN5361_c0_g1	182	202	194	-31.70	-22.70	0.71608832807571	8	1-3,202-200;6-15,198-189;16-20,187-183	4-5,199-199[AILq];x-x,188-188[BULt];21-21,182-182[UP3]	.(((((.((((((((((.-(((&)))..))))))))))-))))).	GAGAUCUCGAGCGGUCUG-UCG&CGAAAAGAUCGCUUG-GAUUUA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a281_TRINITY_DN5361_c0_g1_194_TPlot.pdf
TRINITY_DN5361_c0_g1:195	si_a280	TRINITY_DN5361_c0_g1	183	203	195	-32.10	-22.30	0.694704049844237	8	2-4,202-200;7-16,198-189;17-21,187-183	1-1,203-203[UP5];5-6,199-199[AILq];x-x,188-188[BULt]	(((((.((((((((((.-(((.&.)))..))))))))))-)))))	AGAUCUCGAGCGGUCUG-UCGA&ACGAAAAGAUCGCUUG-GAUUU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN5361_c0_g1_195_TPlot.pdf
TRINITY_DN5364_c0_g1:1374	si_a73	TRINITY_DN5364_c0_g1	1362	1383	1374	-21.90	-14.30	0.65296803652968	7.5	1-7,1383-1377;9-13,1375-1371;15-21,1368-1362	8-8,1376-1376[SIL];14-14,1370-1369[AILt]	(((((((..(((((.(((((((&))))))).)))))-.)))))))	GAUGAUGUUGAAACUGUUUGGA&UUCAAAUUGUUUU-UCAUUAUU	4	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN5364_c0_g1_1374_TPlot.pdf
TRINITY_DN5365_c0_g1:1721	si_a630	TRINITY_DN5365_c0_g1	1710	1731	1721	-25.80	-18.30	0.709302325581395	7.5	1-7,1731-1725;8-18,1723-1713	x-x,1724-1724[BULt];19-21,1712-1710[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	GGCGGAGAAUCGACAAUAGUAC&GUAUUAU-GUCGAUUUUUUUGA	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN5365_c0_g1_1721_TPlot.pdf
TRINITY_DN5365_c0_g1:1722	si_a629	TRINITY_DN5365_c0_g1	1711	1732	1722	-26.30	-18.70	0.711026615969582	7.5	2-8,1731-1725;9-19,1723-1713	1-1,1732-1732[UP5];x-x,1724-1724[BULt];20-21,1712-1711[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	GCGGAGAAUCGACAAUAGUACU&CGUAUUAU-GUCGAUUUUUUUG	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN5365_c0_g1_1722_TPlot.pdf
TRINITY_DN5365_c0_g1:1725	si_a627	TRINITY_DN5365_c0_g1	1713	1735	1725	-29.50	-21.40	0.725423728813559	7	1-3,1735-1733;4-10,1731-1725;11-21,1723-1713	x-x,1732-1732[BULt];x-x,1724-1724[BULt]	(((((((((((.(((((((.(((&)))-)))))))-)))))))))))	GGAGAAUCGACAAUAGUACUGCU&GGC-GUAUUAU-GUCGAUUUUUU	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5365_c0_g1_1725_TPlot.pdf
TRINITY_DN5365_c0_g1:1726	si_a626	TRINITY_DN5365_c0_g1	1714	1736	1726	-30.20	-21.60	0.71523178807947	7	1-4,1736-1733;5-11,1731-1725;12-21,1723-1714	x-x,1732-1732[BULt];x-x,1724-1724[BULt]	((((((((((.(((((((.((((&))))-)))))))-))))))))))	GAGAAUCGACAAUAGUACUGCUU&AGGC-GUAUUAU-GUCGAUUUUU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN5365_c0_g1_1726_TPlot.pdf
TRINITY_DN5365_c0_g1:1727	si_a625	TRINITY_DN5365_c0_g1	1715	1737	1727	-30.60	-20.30	0.663398692810457	7.5	2-5,1736-1733;6-12,1731-1725;13-21,1723-1715	1-1,1737-1737[UP5];x-x,1732-1732[BULt];x-x,1724-1724[BULt]	(((((((((.(((((((.((((.&.))))-)))))))-)))))))))	AGAAUCGACAAUAGUACUGCUUC&UAGGC-GUAUUAU-GUCGAUUUU	2	0.984730623737313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN5365_c0_g1_1727_TPlot.pdf
TRINITY_DN5365_c0_g1:1753	si_a307	TRINITY_DN5365_c0_g1	1742	1762	1753	-33.00	-22.80	0.690909090909091	5.5	1-12,1762-1751;14-15,1749-1748;17-19,1746-1744	13-13,1750-1750[SIL];16-16,1747-1747[SIL];20-21,1743-1742[UP3]	..(((.((.((((((((((((&)))))))))))).)).)))..	AAGGACAGCUCCAAGUGAAUC&GAUUCGCUUGGAUUUAUCCAU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN5365_c0_g1_1753_TPlot.pdf
TRINITY_DN5365_c0_g1:1754	si_a306	TRINITY_DN5365_c0_g1	1743	1763	1754	-33.50	-22.90	0.683582089552239	5.5	2-13,1762-1751;15-16,1749-1748;18-20,1746-1744	1-1,1763-1763[UP5];14-14,1750-1750[SIL];17-17,1747-1747[SIL];21-21,1743-1743[UP3]	.(((.((.((((((((((((.&.)))))))))))).)).))).	AGGACAGCUCCAAGUGAAUCA&AGAUUCGCUUGGAUUUAUCCA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN5365_c0_g1_1754_TPlot.pdf
TRINITY_DN5365_c0_g1:1755	si_a305	TRINITY_DN5365_c0_g1	1744	1764	1755	-32.80	-22.40	0.682926829268293	6.5	3-14,1762-1751;16-17,1749-1748;19-21,1746-1744	1-2,1764-1763[UP5];15-15,1750-1750[SIL];18-18,1747-1747[SIL]	(((.((.((((((((((((..&..)))))))))))).)).)))	GGACAGCUCCAAGUGAAUCAC&AAGAUUCGCUUGGAUUUAUCC	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a305_TRINITY_DN5365_c0_g1_1755_TPlot.pdf
TRINITY_DN5365_c0_g1:1757	si_a303	TRINITY_DN5365_c0_g1	1746	1766	1757	-28.40	-19.20	0.676056338028169	13	5-16,1762-1751	1-4,1766-1763[UP5];17-21,1750-1746[UP3]	.....((((((((((((....&....)))))))))))).....	ACAGCUCCAAGUGAAUCACAA&AAAAGAUUCGCUUGGAUUUAU	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN5365_c0_g1_1757_TPlot.pdf
TRINITY_DN5365_c0_g1:1759	si_a301	TRINITY_DN5365_c0_g1	1748	1768	1759	-27.80	-19.20	0.690647482014388	15	7-18,1762-1751	1-6,1768-1763[UP5];19-21,1750-1748[UP3]	...((((((((((((......&......))))))))))))...	AGCUCCAAGUGAAUCACAAAG&AAAAAAGAUUCGCUUGGAUUU	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN5365_c0_g1_1759_TPlot.pdf
TRINITY_DN5365_c0_g1:1760	si_a300	TRINITY_DN5365_c0_g1	1749	1769	1760	-28.20	-19.20	0.680851063829787	15.5	8-19,1762-1751	1-7,1769-1763[UP5];20-21,1750-1749[UP3]	..((((((((((((.......&.......))))))))))))..	GCUCCAAGUGAAUCACAAAGA&UAAAAAAGAUUCGCUUGGAUU	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN5365_c0_g1_1760_TPlot.pdf
TRINITY_DN5365_c0_g1:2452	si_a412	TRINITY_DN5365_c0_g1	2441	2461	2452	-18.30	-12.20	0.666666666666667	10	6-21,2456-2441	1-5,2461-2457[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAUUUAUUUAAAUAUGUAAAU&UUGUUUAUAUUUAAAUAAAUA	3	0.999998031553349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN5365_c0_g1_2452_TPlot.pdf
TRINITY_DN5365_c0_g1:2454	si_a412	TRINITY_DN5365_c0_g1	2441	2463	2454	-18.30	-12.20	0.666666666666667	7	2-10,2462-2454;11-21,2451-2441	1-1,2463-2463[UP5];x-x,2453-2452[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	UAUUUAUUUAAAUAUGUAAAUAU&UUGUUUAUAU--UUAAAUAAAUA	3	0.99999863267643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN5365_c0_g1_2454_TPlot.pdf
TRINITY_DN5365_c0_g1:2621	si_s95	TRINITY_DN5365_c0_g1	2610	2630	2621	-36.30	-24.40	0.672176308539945	8	1-9,2630-2622;11-16,2620-2615	10-10,2621-2621[SIL];17-21,2614-2610[UP3]	.....((((((.(((((((((&))))))))).)))))).....	UAUUACCGAAGGGAGGAAGAA&UUCUUCUUCGCUUCGGAUUGG	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN5365_c0_g1_2621_TPlot.pdf
TRINITY_DN5365_c0_g1:2624	si_s92	TRINITY_DN5365_c0_g1	2613	2633	2624	-34.90	-29.60	0.848137535816619	4	1-12,2633-2622;14-19,2620-2615	13-13,2621-2621[SIL];20-21,2614-2613[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	UACCGAAGGGAGGAAGAAGAA&UUCUUCUUCUUCGCUUCGGAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5365_c0_g1_2624_TPlot.pdf
TRINITY_DN5365_c0_g1:2626	si_s90	TRINITY_DN5365_c0_g1	2615	2635	2626	-35.30	-29.70	0.841359773371105	5	3-14,2633-2622;16-21,2620-2615	1-2,2635-2634[UP5];15-15,2621-2621[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	CCGAAGGGAGGAAGAAGAACU&CUUUCUUCUUCUUCGCUUCGG	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5365_c0_g1_2626_TPlot.pdf
TRINITY_DN53698_c0_g1:185	si_s73	TRINITY_DN53698_c0_g1	174	195	185	-24.00	-16.70	0.695833333333333	10.5	1-6,195-190;7-9,188-186;12-21,183-174	x-x,189-189[BULt];10-11,185-184[SIL]	((((((((((..(((.((((((&))))))-)))..))))))))))	AGAGGGAGGAUUAAGCGAUGGA&UCUAUU-UUUUUUCUUUCCUUU	2	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN53698_c0_g1_185_TPlot.pdf
TRINITY_DN536_c0_g1:1144	si_s77	TRINITY_DN536_c0_g1	1133	1153	1144	-25.50	-16.60	0.650980392156863	7.5	1-12,1153-1142;14-20,1140-1134	13-13,1141-1141[SIL];21-21,1133-1133[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	UGAGAAAGAGAAGAAGGGGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN536_c0_g1_1144_TPlot.pdf
TRINITY_DN536_c0_g1:1146	si_s84	TRINITY_DN536_c0_g1	1135	1155	1146	-32.30	-21.00	0.65015479876161	7.5	3-16,1153-1140;18-20,1138-1136	1-2,1155-1154[UP5];17-17,1139-1139[SIL];21-21,1135-1135[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	AGAAAGAGAAGAAGGGGAAAG&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN536_c0_g1_1146_TPlot.pdf
TRINITY_DN536_c0_g1:1147	si_s69	TRINITY_DN536_c0_g1	1136	1156	1147	-23.40	-15.80	0.675213675213675	10.5	4-7,1153-1150;9-21,1148-1136	1-3,1156-1154[UP5];8-8,1149-1149[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAGAAGAAGGGGAAAGC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN536_c0_g1_1147_TPlot.pdf
TRINITY_DN536_c0_g1:1163	si_a140	TRINITY_DN536_c0_g1	1152	1173	1163	-25.20	-17.00	0.674603174603175	13.5	1-5,1173-1169;10-21,1163-1152	6-9,1168-1164[AILt]	((((((((((((.....(((((&)))))-....))))))))))))	AAAGCAGCGACGCUGGCGUUGC&GUAAU-UAAUCGUUGUUGUUUU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN536_c0_g1_1163_TPlot.pdf
TRINITY_DN536_c0_g1:1207	si_s87	TRINITY_DN536_c0_g1	1196	1217	1207	-32.90	-23.20	0.70516717325228	10.5	3-8,1215-1210;10-20,1207-1197	1-2,1217-1216[UP5];9-9,1209-1208[AILt];21-21,1196-1196[UP3]	.(((((((((((..((((((..&..))))))-.))))))))))).	CAGCGAAGGGGACUGGAAGGCA&UUCCUUUC-UUCUUCUUCGCUU	2	0.999998374711793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN536_c0_g1_1207_TPlot.pdf
TRINITY_DN536_c0_g1:1208	si_s86	TRINITY_DN536_c0_g1	1197	1219	1208	-32.90	-23.40	0.711246200607903	8	1-3,1219-1217;4-9,1215-1210;11-21,1207-1197	x-x,1216-1216[BULt];10-10,1209-1208[AILt]	(((((((((((..((((((.(((&)))-))))))-.)))))))))))	AGCGAAGGGGACUGGAAGGCAAA&UUU-CCUUUC-UUCUUCUUCGCU	4	0.999999988113296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN536_c0_g1_1208_TPlot.pdf
TRINITY_DN536_c0_g1:2486	si_s803	TRINITY_DN536_c0_g1	2475	2495	2486	-26.00	-17.40	0.669230769230769	17	7-19,2489-2477	1-6,2495-2490[UP5];20-21,2476-2475[UP3]	..(((((((((((((......&......)))))))))))))..	CCGAGGUAGCGGGGGGCCCGC&AUUUUAUCUUCGUUACCUUUU	3	0.999999999994308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN536_c0_g1_2486_TPlot.pdf
TRINITY_DN536_c0_g1:949	si_a257	TRINITY_DN536_c0_g1	937	959	949	-38.20	-25.30	0.662303664921466	10	2-6,958-954;8-16,951-943;19-21,939-937	1-1,959-959[UP5];7-7,953-952[AILt];17-18,942-940[AILt]	(((...(((((((((..(((((.&.)))))-.)))))))))-..)))	GCGGGAUGCCCUCGGGCACAGUG&GAUUGU-AUCGAGGGCA-AACGC	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a257_TRINITY_DN536_c0_g1_949_TPlot.pdf
TRINITY_DN5370_c0_g1:1853	si_s89	TRINITY_DN5370_c0_g1	1842	1871	1853	-35.30	-24.00	0.679886685552408	22.5	1-4,1871-1868;5-19,1858-1844	x-x,1867-1859[BULt];20-21,1843-1842[UP3]	..(((((((((((((((.........((((&))))---------)))))))))))))))..	CUAGGCGAAGAAGGAGACAAAGAAUGGAGG&CCUU---------UCUUCUUCUUCGCUUCG	4	0.999999999978531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5370_c0_g1_1853_TPlot.pdf
TRINITY_DN5371_c0_g1:637	si_a386	TRINITY_DN5371_c0_g1	626	649	637	-24.80	-16.30	0.657258064516129	10.5	2-4,648-646;6-8,644-642;9-20,638-627	1-1,649-649[UP5];5-5,645-645[SIL];x-x,641-639[BULt];21-21,626-626[UP3]	.((((((((((((...(((.(((.&.))).)))---)))))))))))).	CUCUAUGUUCUUAUAAAUUGGAAG&UUUCGAAU---UAAGAAUAUAGAA	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN5371_c0_g1_637_TPlot.pdf
TRINITY_DN5376_c0_g1:4879	si_a113	TRINITY_DN5376_c0_g1	4868	4888	4879	-26.20	-18.10	0.690839694656489	15	7-18,4882-4871	1-6,4888-4883[UP5];19-21,4870-4868[UP3]	...((((((((((((......&......))))))))))))...	AGCGAGACAAGCUCGAUGAUA&AAAAUACGAGCUUGUUUUAUA	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN5376_c0_g1_4879_TPlot.pdf
TRINITY_DN5377_c0_g1:1271	si_a21	TRINITY_DN5377_c0_g1	1259	1281	1271	-24.30	-18.00	0.740740740740741	7	1-6,1281-1276;7-17,1274-1264;18-21,1262-1259	x-x,1275-1275[BULt];x-x,1263-1263[BULt]	((((.(((((((((((.((((((&))))))-)))))))))))-))))	UUGGCAGCUAGAGAUGAAAUAGG&CCUAUU-UAUUUUUAGUU-CUAA	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN5377_c0_g1_1271_TPlot.pdf
TRINITY_DN5377_c0_g1:1276	si_a17	TRINITY_DN5377_c0_g1	1264	1285	1276	-24.30	-17.60	0.724279835390947	10.5	4-10,1282-1276;11-21,1274-1264	1-3,1285-1283[UP5];x-x,1275-1275[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AGCUAGAGAUGAAAUAGGUAAU&AAAGCCUAUU-UAUUUUUAGUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN5377_c0_g1_1276_TPlot.pdf
TRINITY_DN5377_c0_g1:1519	si_s692	TRINITY_DN5377_c0_g1	1508	1528	1519	-24.20	-17.00	0.702479338842975	9	1-5,1528-1524;8-19,1521-1510	6-7,1523-1522[SIL];20-21,1509-1508[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	AUUGGAUCGACUAAACAGGCU&AGUUUAAUUAGUCGAUUUAUU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN5377_c0_g1_1519_TPlot.pdf
TRINITY_DN5377_c0_g1:1520	si_s691	TRINITY_DN5377_c0_g1	1509	1529	1520	-26.20	-17.30	0.66030534351145	9	2-6,1528-1524;9-20,1521-1510	1-1,1529-1529[UP5];7-8,1523-1522[SIL];21-21,1509-1509[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	UUGGAUCGACUAAACAGGCUA&GAGUUUAAUUAGUCGAUUUAU	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN5377_c0_g1_1520_TPlot.pdf
TRINITY_DN5377_c0_g1:1574	si_a634	TRINITY_DN5377_c0_g1	1563	1582	1574	-26.40	-17.30	0.65530303030303	8	1-6,1582-1577;9-20,1575-1564	7-8,1576-1576[AILq];21-21,1563-1563[UP3]	.((((((((((((.-((((((&))))))..)))))))))))).	AUGCUCAGAAAGAA-GAUAUA&UAUGUCGAUUUUUUUGAGUAA	2	0.999999796648994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN5377_c0_g1_1574_TPlot.pdf
TRINITY_DN5377_c0_g1:1919	si_a404	TRINITY_DN5377_c0_g1	1908	1928	1919	-21.70	-15.50	0.714285714285714	7.5	2-10,1927-1919;12-19,1917-1910	1-1,1928-1928[UP5];11-11,1918-1918[SIL];20-21,1909-1908[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	GUGAUGUAGAGGAAACAAUUA&GAAUUGUUUUGUUUAUAUUUA	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN5377_c0_g1_1919_TPlot.pdf
TRINITY_DN5377_c0_g1:1920	si_a403	TRINITY_DN5377_c0_g1	1909	1929	1920	-22.00	-15.50	0.704545454545455	8.5	3-11,1927-1919;13-20,1917-1910	1-2,1929-1928[UP5];12-12,1918-1918[SIL];21-21,1909-1909[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	UGAUGUAGAGGAAACAAUUAU&AGAAUUGUUUUGUUUAUAUUU	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5377_c0_g1_1920_TPlot.pdf
TRINITY_DN5377_c0_g1:1921	si_a402	TRINITY_DN5377_c0_g1	1910	1930	1921	-22.40	-15.50	0.691964285714286	8.5	4-12,1927-1919;14-21,1917-1910	1-3,1930-1928[UP5];13-13,1918-1918[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GAUGUAGAGGAAACAAUUAUC&UAGAAUUGUUUUGUUUAUAUU	2	0.99965277419438	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5377_c0_g1_1921_TPlot.pdf
TRINITY_DN5377_c0_g1:1978	si_s821	TRINITY_DN5377_c0_g1	1967	1989	1978	-22.20	-14.78	0.665765765765766	12	1-9,1989-1981;12-19,1976-1969	10-11,1980-1977[AILt];20-21,1968-1967[UP3]	..((((((((....(((((((((&)))))))))--..))))))))..	AAGUUUUUCAGAGCGUUGAGAAA&UUUCUUAAU--AAUGAAAAACAA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN5377_c0_g1_1978_TPlot.pdf
TRINITY_DN5377_c0_g1:2062	si_s56	TRINITY_DN5377_c0_g1	2052	2071	2062	-29.20	-19.40	0.664383561643836	9.5	3-14,2069-2058;16-20,2057-2053	1-2,2071-2070[UP5];15-15,x-x[BULq];21-21,2052-2052[UP3]	.(((((-((((((((((((..&..)))))))))))).))))).	AAGGAG-UGUUGGCUUGGAGA&AUUUCAAGUUAGCAACUUCUA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN5377_c0_g1_2062_TPlot.pdf
TRINITY_DN5377_c0_g1:2085	si_s238	TRINITY_DN5377_c0_g1	2067	2094	2085	-33.40	-21.80	0.652694610778443	18.5	2-12,2093-2083;13-15,2074-2072;17-21,2071-2067	1-1,2094-2094[UP5];x-x,2082-2075[BULt];16-16,x-x[BULq]	(((((-(((........(((((((((((.&.)))))))))))--------))).)))))	GGAGA-GCCAUUAAAGAUAUUGAUUCCUG&AAGGAAUCAAUA--------GGCAUUUCC	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s238_TRINITY_DN5377_c0_g1_2085_TPlot.pdf
TRINITY_DN5378_c0_g3:423	si_s2	TRINITY_DN5378_c0_g3	412	433	423	-20.50	-13.62	0.664390243902439	12	1-7,433-427;11-21,422-412	8-10,426-423[AILt]	(((((((((((....(((((((&)))))))-...)))))))))))	GUAAUAAUAGGGCACUGUGAGA&UUUUAUA-UUACUUAUUAUUAC	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN5378_c0_g3_423_TPlot.pdf
TRINITY_DN5380_c0_g1:363	si_a327	TRINITY_DN5380_c0_g1	347	372	363	-28.40	-19.50	0.686619718309859	12.5	2-16,371-357;17-21,351-347	1-1,372-372[UP5];x-x,356-352[BULt]	(((((.....(((((((((((((((.&.)))))))))))))))-----)))))	GGACGACCAUAGGAGUGGAAAGGUUG&UGAUUUUUUUAUUCCU-----UGUCC	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN5380_c0_g1_363_TPlot.pdf
TRINITY_DN5380_c0_g1:364	si_a326	TRINITY_DN5380_c0_g1	348	373	364	-26.20	-17.50	0.66793893129771	12	1-17,373-357;18-21,351-348	x-x,356-352[BULt]	((((.....(((((((((((((((((&)))))))))))))))))-----))))	GACGACCAUAGGAGUGGAAAGGUUGU&AUGAUUUUUUUAUUCCU-----UGUC	3	0.999999996514291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5380_c0_g1_364_TPlot.pdf
TRINITY_DN5380_c0_g1:514	si_a749	TRINITY_DN5380_c0_g1	503	525	514	-42.10	-28.10	0.667458432304038	7.5	1-2,525-524;3-8,522-517;9-14,515-510;16-19,508-505	x-x,523-523[BULt];x-x,516-516[BULt];15-15,509-509[SIL];20-21,504-503[UP3]	..((((.((((((.((((((.((&))-))))))-)))))).))))..	AACCAGUGGAGGUAUCAUGGACC&GG-CCAUGA-ACCUCCUUUGGGU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN5380_c0_g1_514_TPlot.pdf
TRINITY_DN5380_c0_g1:515	si_a748	TRINITY_DN5380_c0_g1	504	526	515	-42.00	-28.90	0.688095238095238	6.5	1-3,526-524;4-9,522-517;10-15,515-510;17-20,508-505	x-x,523-523[BULt];x-x,516-516[BULt];16-16,509-509[SIL];21-21,504-504[UP3]	.((((.((((((.((((((.(((&)))-))))))-)))))).)))).	ACCAGUGGAGGUAUCAUGGACCA&UGG-CCAUGA-ACCUCCUUUGGG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a748_TRINITY_DN5380_c0_g1_515_TPlot.pdf
TRINITY_DN5380_c0_g1:517	si_a747	TRINITY_DN5380_c0_g1	505	527	517	-41.30	-28.50	0.690072639225182	6.5	2-4,526-524;5-10,522-517;11-16,515-510;18-21,508-505	1-1,527-527[UP5];x-x,523-523[BULt];x-x,516-516[BULt];17-17,509-509[SIL]	((((.((((((.((((((.(((.&.)))-))))))-)))))).))))	CCAGUGGAGGUAUCAUGGACCAC&CUGG-CCAUGA-ACCUCCUUUGG	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN5380_c0_g1_517_TPlot.pdf
TRINITY_DN5383_c0_g1:316	si_a406	TRINITY_DN5383_c0_g1	305	325	316	-19.80	-13.80	0.696969696969697	14	3-16,323-310	1-2,325-324[UP5];17-21,309-305[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUAUCGUGUGGACAGAGCGGA&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999997415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5383_c0_g1_316_TPlot.pdf
TRINITY_DN5385_c0_g1:226	si_a324	TRINITY_DN5385_c0_g1	214	235	226	-27.50	-18.40	0.669090909090909	11.5	1-10,235-226;11-18,224-217	x-x,225-225[BULt];19-21,216-214[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	GAUGGGGUGGAUGGGGUCAUGG&CCAUGAUUUU-UUUAUUCCUUG	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN5385_c0_g1_226_TPlot.pdf
TRINITY_DN5385_c0_g1:229	si_a321	TRINITY_DN5385_c0_g1	217	238	229	-26.70	-21.50	0.805243445692884	7	1-13,238-226;14-21,224-217	x-x,225-225[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GGGGUGGAUGGGGUCAUGGAUG&UAUCCAUGAUUUU-UUUAUUCC	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN5385_c0_g1_229_TPlot.pdf
TRINITY_DN5385_c0_g1:230	si_a669	TRINITY_DN5385_c0_g1	219	240	230	-32.20	-22.40	0.695652173913043	10.5	1-6,240-235;8-9,233-232;11-20,229-220	7-7,234-234[SIL];10-10,231-230[AILt];21-21,219-219[UP3]	.((((((((((..((.((((((&)))))).))-.)))))))))).	GGUGGAUGGGGUCAUGGAUGGG&CCUAUUGAU-UCCUUAUUCACG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a669_TRINITY_DN5385_c0_g1_230_TPlot.pdf
TRINITY_DN5385_c0_g1:231	si_a319	TRINITY_DN5385_c0_g1	219	240	231	-22.40	-17.10	0.763392857142857	8	1-15,240-226;16-21,224-219	x-x,225-225[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	GGUGGAUGGGGUCAUGGAUGGG&UUUAUCCAUGAUUUU-UUUAUU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5385_c0_g1_231_TPlot.pdf
TRINITY_DN5385_c0_g1:232	si_a668	TRINITY_DN5385_c0_g1	220	241	232	-33.20	-21.80	0.656626506024096	10.5	2-7,240-235;9-10,233-232;12-21,229-220	1-1,241-241[UP5];8-8,234-234[SIL];11-11,231-230[AILt]	((((((((((..((.((((((.&.)))))).))-.))))))))))	GUGGAUGGGGUCAUGGAUGGGG&GCCUAUUGAU-UCCUUAUUCAC	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN5385_c0_g1_232_TPlot.pdf
TRINITY_DN5385_c0_g1:234	si_a316	TRINITY_DN5385_c0_g1	223	243	234	-26.30	-17.10	0.650190114068441	12	1-1,243-243;4-18,240-226	2-3,242-241[SIL];19-21,225-223[UP3]	...(((((((((((((((..(&)..)))))))))))))))...	GAUGGGGUCAUGGAUGGGGAC&GGAUUUAUCCAUGAUUUUUUU	3	0.99999999963153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN5385_c0_g1_234_TPlot.pdf
TRINITY_DN5386_c0_g1:1237	si_s309	TRINITY_DN5386_c0_g1	1226	1246	1237	-33.80	-22.20	0.656804733727811	14	1-3,1246-1244;11-21,1236-1226	4-10,1243-1237[SIL]	(((((((((((.......(((&))).......)))))))))))	CAAGAAGGACAUGUCUCGCGC&GCGAAAAUUCUGUCCUUCUUG	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN5386_c0_g1_1237_TPlot.pdf
TRINITY_DN5386_c0_g1:18	si_s885	TRINITY_DN5386_c0_g1	6	27	18	-26.20	-17.30	0.66030534351145	6	1-10,27-18;11-17,16-10;20-20,7-7	x-x,17-17[BULt];18-19,9-8[SIL];21-21,6-6[UP3]	.(..(((((((.((((((((((&))))))))))-)))))))..).	CGCUAGCCUAUCUUAUUUUUGG&CUAAAAAUAA-AUAGGCUUUCU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s885_TRINITY_DN5386_c0_g1_18_TPlot.pdf
TRINITY_DN5386_c0_g1:19	si_s884	TRINITY_DN5386_c0_g1	7	28	19	-26.30	-18.50	0.703422053231939	5	1-11,28-18;12-18,16-10;21-21,7-7	x-x,17-17[BULt];19-20,9-8[SIL]	(..(((((((.(((((((((((&)))))))))))-)))))))..)	GCUAGCCUAUCUUAUUUUUGGU&ACUAAAAAUAA-AUAGGCUUUC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s884_TRINITY_DN5386_c0_g1_19_TPlot.pdf
TRINITY_DN5386_c0_g1:20	si_s883	TRINITY_DN5386_c0_g1	8	29	20	-24.30	-18.70	0.769547325102881	6	2-12,28-18;13-19,16-10	1-1,29-29[UP5];x-x,17-17[BULt];20-21,9-8[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	CUAGCCUAUCUUAUUUUUGGUC&AACUAAAAAUAA-AUAGGCUUU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN5386_c0_g1_20_TPlot.pdf
TRINITY_DN5386_c0_g1:21	si_s882	TRINITY_DN5386_c0_g1	9	30	21	-26.30	-18.70	0.711026615969582	6	3-13,28-18;14-20,16-10	1-2,30-29[UP5];x-x,17-17[BULt];21-21,9-9[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UAGCCUAUCUUAUUUUUGGUCU&GAACUAAAAAUAA-AUAGGCUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN5386_c0_g1_21_TPlot.pdf
TRINITY_DN5386_c0_g1:24	si_s879	TRINITY_DN5386_c0_g1	12	32	24	-24.30	-16.30	0.670781893004115	5	2-5,31-28;7-16,27-18;17-21,16-12	1-1,32-32[UP5];6-6,x-x[BULq];x-x,17-17[BULt]	(((((.((((((((((-((((.&.)))).))))))))))-)))))	CCUAUCUUAUUUUUGG-UCUAC&UUAGAACUAAAAAUAA-AUAGG	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s879_TRINITY_DN5386_c0_g1_24_TPlot.pdf
TRINITY_DN5386_c0_g1:638	si_a630	TRINITY_DN5386_c0_g1	623	647	638	-25.80	-19.20	0.744186046511628	6.5	1-14,647-634;15-20,629-624	x-x,633-630[BULt];21-21,623-623[UP3]	.((((((....((((((((((((((&))))))))))))))----)))))).	CCAAAAAAAUUGAUUGACAUAAUAC&GUAUUAUGUCGAUU----UUUUUGA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN5386_c0_g1_638_TPlot.pdf
TRINITY_DN53872_c0_g1:122	si_a356	TRINITY_DN53872_c0_g1	112	131	122	-26.90	-18.40	0.684014869888476	3	1-16,131-116;19-21,114-112	17-18,115-115[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	AUCA-AUCAAAAUAGAAUUGA&UUAAUUCUAUUUUGAUCGGAU	0	0.113586368491334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN53872_c0_g1_122_TPlot.pdf
TRINITY_DN5387_c0_g1:2381	si_a704	TRINITY_DN5387_c0_g1	2370	2390	2381	-29.30	-19.40	0.662116040955631	11	2-13,2389-2378	1-1,2390-2390[UP5];14-21,2377-2370[UP3]	........((((((((((((.&.))))))))))))........	UUCUGGUCGGAGUGUAUCAGG&ACUGGUACAUUCCAAAAUAAU	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN5387_c0_g1_2381_TPlot.pdf
TRINITY_DN5387_c0_g1:2382	si_a703	TRINITY_DN5387_c0_g1	2371	2391	2382	-29.20	-19.40	0.664383561643836	12	3-14,2389-2378	1-2,2391-2390[UP5];15-21,2377-2371[UP3]	.......((((((((((((..&..)))))))))))).......	UCUGGUCGGAGUGUAUCAGGU&AACUGGUACAUUCCAAAAUAA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN5387_c0_g1_2382_TPlot.pdf
TRINITY_DN5387_c0_g1:2384	si_a701	TRINITY_DN5387_c0_g1	2373	2393	2384	-31.20	-21.20	0.67948717948718	8.5	1-3,2393-2391;5-16,2389-2378	4-4,2390-2390[SIL];17-21,2377-2373[UP3]	.....((((((((((((.(((&))).)))))))))))).....	UGGUCGGAGUGUAUCAGGUGU&ACAACUGGUACAUUCCAAAAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN5387_c0_g1_2384_TPlot.pdf
TRINITY_DN5387_c0_g1:2385	si_a700	TRINITY_DN5387_c0_g1	2374	2394	2385	-32.80	-24.40	0.74390243902439	7.5	1-4,2394-2391;6-17,2389-2378	5-5,2390-2390[SIL];18-21,2377-2374[UP3]	....((((((((((((.((((&)))).))))))))))))....	GGUCGGAGUGUAUCAGGUGUG&CACAACUGGUACAUUCCAAAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN5387_c0_g1_2385_TPlot.pdf
TRINITY_DN5387_c0_g1:2386	si_a699	TRINITY_DN5387_c0_g1	2375	2395	2386	-33.60	-24.60	0.732142857142857	7.5	2-5,2394-2391;7-18,2389-2378	1-1,2395-2395[UP5];6-6,2390-2390[SIL];19-21,2377-2375[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	GUCGGAGUGUAUCAGGUGUGG&ACACAACUGGUACAUUCCAAA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a699_TRINITY_DN5387_c0_g1_2386_TPlot.pdf
TRINITY_DN5387_c0_g1:2388	si_a697	TRINITY_DN5387_c0_g1	2377	2397	2388	-35.50	-24.60	0.692957746478873	9.5	4-7,2394-2391;9-20,2389-2378	1-3,2397-2395[UP5];8-8,2390-2390[SIL];21-21,2377-2377[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	CGGAGUGUAUCAGGUGUGGGA&GAACACAACUGGUACAUUCCA	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN5387_c0_g1_2388_TPlot.pdf
TRINITY_DN5387_c0_g1:2389	si_a696	TRINITY_DN5387_c0_g1	2378	2398	2389	-36.30	-24.20	0.666666666666667	10	5-8,2394-2391;10-21,2389-2378	1-4,2398-2395[UP5];9-9,2390-2390[SIL]	((((((((((((.((((....&....)))).))))))))))))	GGAGUGUAUCAGGUGUGGGAC&CGAACACAACUGGUACAUUCC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a696_TRINITY_DN5387_c0_g1_2389_TPlot.pdf
TRINITY_DN5387_c0_g1:3489	si_a192	TRINITY_DN5387_c0_g1	3478	3497	3489	-31.90	-21.50	0.673981191222571	11.5	1-3,3497-3495;6-17,3493-3482	4-5,3494-3494[AILq];18-21,3481-3478[UP3]	....((((((((((((.-(((&)))..))))))))))))....	CAUCUGGUGGGCAGGGU-GGA&UCUUUCCCUGUUCACUAAUAA	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN5387_c0_g1_3489_TPlot.pdf
TRINITY_DN5387_c0_g1:3941	si_s207	TRINITY_DN5387_c0_g1	3930	3950	3941	-33.00	-21.90	0.663636363636364	8.5	3-5,3948-3946;7-21,3944-3930	1-2,3950-3949[UP5];6-6,3945-3945[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UUUCGGGCGCAGCUGCUAUCA&AUGUACCAGUUGUGUUCGAAA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN5387_c0_g1_3941_TPlot.pdf
TRINITY_DN5387_c0_g1:784	si_s636	TRINITY_DN5387_c0_g1	773	794	784	-40.80	-27.60	0.676470588235294	8	2-4,793-791;5-8,789-786;10-13,784-781;15-21,779-773	1-1,794-794[UP5];x-x,790-790[BULt];9-9,785-785[SIL];14-14,780-780[SIL]	(((((((.((((.((((.(((.&.)))-)))).)))).)))))))	UCGAGGGGAAGCUCCUGCCGAU&UUCG-UAGGCGUUUGCCCUCGA	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN5387_c0_g1_784_TPlot.pdf
TRINITY_DN5388_c0_g1:2474	si_s684	TRINITY_DN5388_c0_g1	2462	2483	2474	-28.30	-18.60	0.657243816254417	11	4-15,2480-2469;17-21,2466-2462	1-3,2483-2481[UP5];16-16,2468-2467[AILt]	(((((..((((((((((((...&...))))))))))))-.)))))	GACUGCCUUGGGCUCGUGUGAU&GAAACAUGAGUUUAA-UUAGUC	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN5388_c0_g1_2474_TPlot.pdf
TRINITY_DN53897_c0_g1:19	si_s73	TRINITY_DN53897_c0_g1	6	28	19	-24.00	-16.10	0.670833333333333	5.5	1-3,28-26;5-14,24-15;15-21,12-6	4-4,25-25[SIL];x-x,14-13[BULt]	(((((((..((((((((((.(((&))).))))))))))--)))))))	AAAGGAGGUAGAAAGAAAAAAGA&UCUAUUUUUUUUCU--UUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN53897_c0_g1_19_TPlot.pdf
TRINITY_DN53897_c0_g1:20	si_s72	TRINITY_DN53897_c0_g1	7	29	20	-24.10	-15.80	0.655601659751037	6	1-4,29-26;6-15,24-15;16-21,12-7	5-5,25-25[SIL];x-x,14-13[BULt]	((((((..((((((((((.((((&)))).))))))))))--))))))	AAGGAGGUAGAAAGAAAAAAGAG&UUCUAUUUUUUUUCU--UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN53897_c0_g1_20_TPlot.pdf
TRINITY_DN53897_c0_g1:21	si_s71	TRINITY_DN53897_c0_g1	8	30	21	-25.70	-18.00	0.700389105058366	6.5	1-5,30-26;7-16,24-15;17-21,12-8	6-6,25-25[SIL];x-x,14-13[BULt]	(((((..((((((((((.(((((&))))).))))))))))--)))))	AGGAGGUAGAAAGAAAAAAGAGG&CUUCUAUUUUUUUUCU--UUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN53897_c0_g1_21_TPlot.pdf
TRINITY_DN53897_c0_g1:27	si_s69	TRINITY_DN53897_c0_g1	16	35	27	-23.40	-17.40	0.743589743589744	7	3-7,33-29;9-21,28-16	1-2,35-34[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAAGAAAAAAGA-GGAAGAA&AACUUCUAUUUUUUUUCUUUC	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN53897_c0_g1_27_TPlot.pdf
TRINITY_DN5389_c0_g1:295	si_a785	TRINITY_DN5389_c0_g1	284	308	295	-25.90	-17.22	0.664864864864865	18	1-8,308-301;13-21,292-284	9-12,300-293[AILt]	(((((((((........((((((((&))))))))----....)))))))))	GAGGAUAGAUUCUCUAUUAGAAGGG&CUCUUCUA----UUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5389_c0_g1_295_TPlot.pdf
TRINITY_DN5391_c0_g1:1934	si_s68	TRINITY_DN5391_c0_g1	1923	1944	1934	-23.10	-15.90	0.688311688311688	10.5	3-6,1942-1939;7-20,1937-1924	1-2,1944-1943[UP5];x-x,1938-1938[BULt];21-21,1923-1923[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	CGAGAAGGAGGGUAGAAAGUGA&CAACUU-CUAUUUUUUUUCUUU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5391_c0_g1_1934_TPlot.pdf
TRINITY_DN5393_c0_g2:2161	si_a640	TRINITY_DN5393_c0_g2	2149	2170	2161	-24.10	-16.40	0.680497925311203	6	1-15,2170-2156;16-19,2154-2151	x-x,2155-2155[BULt];20-21,2150-2149[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	ACUAUAUUUACUUAAGAAAGUC&GAUUUUUUUGAGUAA-UAUAUC	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN5393_c0_g2_2161_TPlot.pdf
TRINITY_DN5396_c0_g2:39	si_s69	TRINITY_DN5396_c0_g2	28	48	39	-23.40	-15.40	0.658119658119658	9.5	3-4,46-45;6-20,43-29	1-2,48-47[UP5];5-5,44-44[SIL];21-21,28-28[UP3]	.(((((((((((((((.((..&..)).))))))))))))))).	CAAAGGAAAAGAAUGGUGGGA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5396_c0_g2_39_TPlot.pdf
TRINITY_DN5398_c0_g1:233	si_s449	TRINITY_DN5398_c0_g1	222	242	233	-23.60	-15.70	0.665254237288135	7.5	1-2,242-241;5-10,238-233;12-21,231-222	3-4,240-239[SIL];11-11,232-232[SIL]	((((((((((.((((((..((&))..)))))).))))))))))	AGGUAGUUGUGGUUAUAGUUG&UAUAUAUAACAACAAUUAUCU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN5398_c0_g1_233_TPlot.pdf
TRINITY_DN54011_c0_g1:256	si_a353	TRINITY_DN54011_c0_g1	245	265	256	-24.00	-15.90	0.6625	5.5	2-18,264-248	1-1,265-265[UP5];19-21,247-245[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUUUUAAAAUAGAAUUAGUAG&AUAUUAAUUCUAUUUUGAUCG	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN54011_c0_g1_256_TPlot.pdf
TRINITY_DN54011_c0_g1:260	si_a349	TRINITY_DN54011_c0_g1	249	269	260	-21.30	-14.40	0.676056338028169	10.5	6-21,264-249	1-5,269-265[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAAAAUAGAAUUAGUAGCAAC&GAAAAUAUUAAUUCUAUUUUG	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN54011_c0_g1_260_TPlot.pdf
TRINITY_DN5401_c0_g1:1251	si_a68	TRINITY_DN5401_c0_g1	1240	1262	1251	-25.40	-17.34	0.682677165354331	13.5	1-9,1262-1254;14-20,1247-1241	10-13,1253-1248[AILt];21-21,1240-1240[UP3]	.(((((((......(((((((((&)))))))))--....))))))).	GGAGAAACUGCUGGUGGAAGAAG&CUUCUUUCA--AAUUGUUUUUCA	2	0.999986175771277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5401_c0_g1_1251_TPlot.pdf
TRINITY_DN5401_c0_g1:2845	si_a66	TRINITY_DN5401_c0_g1	2833	2854	2845	-26.70	-17.40	0.651685393258427	13	1-10,2854-2845;13-18,2841-2836	11-12,2844-2842[AILt];19-21,2835-2833[UP3]	...((((((...((((((((((&))))))))))-..))))))...	AGUGACGAUGGAGAAGGAGGUG&CGCUUCUUUC-AAAUUGUUUUU	2	0.999999999757907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5401_c0_g1_2845_TPlot.pdf
TRINITY_DN5401_c0_g1:2893	si_s255	TRINITY_DN5401_c0_g1	2882	2902	2893	-29.40	-20.38	0.693197278911565	8	2-8,2901-2895;12-21,2891-2882	1-1,2902-2902[UP5];9-11,2894-2892[SIL]	((((((((((...(((((((.&.)))))))...))))))))))	UUUUGGGUGACUCAUCGGGAC&UUCCCGAUAUAUUACUCAAAA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN5401_c0_g1_2893_TPlot.pdf
TRINITY_DN5401_c0_g1:3804	si_s14	TRINITY_DN5401_c0_g1	3793	3813	3804	-25.30	-17.90	0.707509881422925	17	9-21,3805-3793	1-8,3813-3806[UP5]	(((((((((((((........&........)))))))))))))	GCAGUCAGUGUAGAAUCCUUU&UAUUAUUACUAUAUUGAUUGC	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN5401_c0_g1_3804_TPlot.pdf
TRINITY_DN5401_c0_g1:4733	si_s217	TRINITY_DN5401_c0_g1	4722	4741	4733	-35.80	-23.30	0.650837988826816	9.5	1-7,4741-4735;9-17,4734-4726	8-8,x-x[BULq];18-21,4725-4722[UP3]	....(((((((((-(((((((&))))))).)))))))))....	CGCGGCGCGGUUU-GGGCGCA&UGUGUUCGAAACCGCGUGAAU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN5401_c0_g1_4733_TPlot.pdf
TRINITY_DN5401_c0_g1:4735	si_s215	TRINITY_DN5401_c0_g1	4724	4743	4735	-37.40	-27.50	0.735294117647059	8.5	1-9,4743-4735;11-19,4734-4726	10-10,x-x[BULq];20-21,4725-4724[UP3]	..(((((((((-(((((((((&))))))))).)))))))))..	CGGCGCGGUUU-GGGCGCAGC&GUUGUGUUCGAAACCGCGUGA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN5401_c0_g1_4735_TPlot.pdf
TRINITY_DN5401_c0_g1:4737	si_s212	TRINITY_DN5401_c0_g1	4727	4745	4737	-38.70	-27.40	0.708010335917313	7	1-2,4745-4744;4-12,4743-4735;14-21,4734-4727	3-3,x-x[BULq];13-13,x-x[BULq]	((((((((-(((((((((-((&)).))))))))).))))))))	CGCGGUUU-GGGCGCAGC-GG&CCAGUUGUGUUCGAAACCGCG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s212_TRINITY_DN5401_c0_g1_4737_TPlot.pdf
TRINITY_DN5401_c0_g1:4845	si_a141	TRINITY_DN5401_c0_g1	4834	4855	4845	-23.80	-16.10	0.676470588235294	9.5	1-7,4855-4849;8-17,4847-4838	x-x,4848-4848[BULt];18-21,4837-4834[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	UUGUACAACGGCGAUUUGAUUG&UAAUUAA-UCGUUGUUGUUUUA	4	0.999999997766903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN5401_c0_g1_4845_TPlot.pdf
TRINITY_DN5401_c0_g1:4847	si_a139	TRINITY_DN5401_c0_g1	4836	4857	4847	-25.90	-17.00	0.656370656370656	9	1-1,4857-4857;3-9,4855-4849;10-19,4847-4838	2-2,4856-4856[SIL];x-x,4848-4848[BULt];20-21,4837-4836[UP3]	..((((((((((.(((((((.(&).)))))))-))))))))))..	GUACAACGGCGAUUUGAUUGGU&AGUAAUUAA-UCGUUGUUGUUU	2	0.998733041046006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN5401_c0_g1_4847_TPlot.pdf
TRINITY_DN5401_c0_g1:4849	si_a138	TRINITY_DN5401_c0_g1	4837	4858	4849	-26.30	-17.80	0.67680608365019	8.5	1-2,4858-4857;4-10,4855-4849;11-20,4847-4838	3-3,4856-4856[SIL];x-x,4848-4848[BULt];21-21,4837-4837[UP3]	.((((((((((.(((((((.((&)).)))))))-)))))))))).	UACAACGGCGAUUUGAUUGGUG&UAGUAAUUAA-UCGUUGUUGUU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN5401_c0_g1_4849_TPlot.pdf
TRINITY_DN5401_c0_g1:4850	si_a137	TRINITY_DN5401_c0_g1	4838	4859	4850	-26.50	-19.40	0.732075471698113	8	1-3,4859-4857;5-11,4855-4849;12-21,4847-4838	4-4,4856-4856[SIL];x-x,4848-4848[BULt]	((((((((((.(((((((.(((&))).)))))))-))))))))))	ACAACGGCGAUUUGAUUGGUGU&AUAGUAAUUAA-UCGUUGUUGU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN5401_c0_g1_4850_TPlot.pdf
TRINITY_DN5401_c0_g1:6960	si_s191	TRINITY_DN5401_c0_g1	6949	6969	6960	-26.60	-17.70	0.665413533834586	9.5	3-10,6967-6960;12-16,6958-6954;18-21,6952-6949	1-2,6969-6968[UP5];11-11,6959-6959[SIL];17-17,6953-6953[SIL]	((((.(((((.((((((((..&..)))))))).))))).))))	UGCGAUCCGACGUAGUCGUAU&UAACGAUUAUUUUGGAAUGUA	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN5401_c0_g1_6960_TPlot.pdf
TRINITY_DN5401_c0_g1:8145	si_s199	TRINITY_DN5401_c0_g1	8133	8155	8145	-31.20	-21.60	0.692307692307692	8.5	1-8,8155-8148;9-12,8146-8143;14-20,8140-8134	x-x,8147-8147[BULt];13-13,8142-8141[AILt];21-21,8133-8133[UP3]	.(((((((..((((.((((((((&))))))))-))))-.))))))).	UCGACUGGCGGCAUCUCCAAGAU&AUUUUGGA-AUGU-ACCAGUUGU	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN5401_c0_g1_8145_TPlot.pdf
TRINITY_DN5402_c0_g1:1160	si_a865	TRINITY_DN5402_c0_g1	1150	1168	1160	-24.00	-16.90	0.704166666666667	8.5	1-9,1168-1160;12-21,1159-1150	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GAUUGAAUCU--GAUGGUUGG&CCAAUUAUUAAAGAUUUAGUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN5402_c0_g1_1160_TPlot.pdf
TRINITY_DN5402_c0_g1:1162	si_a862	TRINITY_DN5402_c0_g1	1153	1171	1162	-22.70	-16.70	0.73568281938326	6.5	2-12,1170-1160;15-21,1159-1153	1-1,1171-1171[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	UGAAUCU--GAUGGUUGGAUA&AAUCCAAUUAUUAAAGAUUUA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN5402_c0_g1_1162_TPlot.pdf
TRINITY_DN5405_c0_g1:2473	si_a448	TRINITY_DN5405_c0_g1	2462	2483	2473	-25.50	-17.40	0.68235294117647	8.5	1-7,2483-2477;8-15,2475-2468;18-21,2465-2462	x-x,2476-2476[BULt];16-17,2467-2466[SIL]	((((..((((((((.(((((((&)))))))-))))))))..))))	GUGUUCCAGCAGUUCGUCUCGU&AUGAGAU-AAUUGUUGUUAUAU	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN5405_c0_g1_2473_TPlot.pdf
TRINITY_DN5406_c0_g2:384	si_a180	TRINITY_DN5406_c0_g2	373	393	384	-32.10	-22.00	0.685358255451713	5	1-12,393-382;15-19,379-375	13-14,381-380[SIL];20-21,374-373[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	AUGGAAAAUUAUUAUCUGGAC&GUCUAGAUAAUAUCUUUCCCU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN5406_c0_g2_384_TPlot.pdf
TRINITY_DN5406_c0_g2:385	si_a179	TRINITY_DN5406_c0_g2	374	394	385	-32.90	-22.10	0.671732522796353	5	2-13,393-382;16-20,379-375	1-1,394-394[UP5];14-15,381-380[SIL];21-21,374-374[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	UGGAAAAUUAUUAUCUGGACA&CGUCUAGAUAAUAUCUUUCCC	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN5406_c0_g2_385_TPlot.pdf
TRINITY_DN5410_c0_g2:1599	si_s71	TRINITY_DN5410_c0_g2	1588	1608	1599	-25.70	-16.90	0.657587548638132	9.5	1-2,1608-1607;4-10,1605-1599;12-20,1597-1589	3-3,1606-1606[SIL];11-11,1598-1598[SIL];21-21,1588-1588[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	UGGAGGGGAACAAGAUGGUGG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5410_c0_g2_1599_TPlot.pdf
TRINITY_DN5412_c0_g1:333	si_s76	TRINITY_DN5412_c0_g1	322	342	333	-23.60	-16.50	0.699152542372881	10	3-15,340-328;18-19,325-324	1-2,342-341[UP5];16-17,327-326[SIL];20-21,323-322[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	UUGACUGGAGAGAGAAGAAUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5412_c0_g1_333_TPlot.pdf
TRINITY_DN5412_c0_g1:334	si_s75	TRINITY_DN5412_c0_g1	323	343	334	-24.00	-16.50	0.6875	10.5	4-16,340-328;19-20,325-324	1-3,343-341[UP5];17-18,327-326[SIL];21-21,323-323[UP3]	.((..(((((((((((((...&...)))))))))))))..)).	UGACUGGAGAGAGAAGAAUGC&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5412_c0_g1_334_TPlot.pdf
TRINITY_DN5412_c0_g1:382	si_s77	TRINITY_DN5412_c0_g1	371	391	382	-25.50	-17.40	0.68235294117647	9	2-14,390-378;17-18,375-374	1-1,391-391[UP5];15-16,377-376[SIL];19-21,373-371[UP3]	...((..(((((((((((((.&.)))))))))))))..))...	AUUGAUUGGAGAGAGAAGAAU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5412_c0_g1_382_TPlot.pdf
TRINITY_DN5412_c0_g1:383	si_a792	TRINITY_DN5412_c0_g1	372	391	383	-27.60	-18.50	0.670289855072464	7	1-8,391-384;10-19,383-374	9-9,x-x[BULq];20-21,373-372[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	UUGAUUGGAGAG-AGAAGAAU&AUUUUUCUAUUUUCCAAUCCG	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN5412_c0_g1_383_TPlot.pdf
TRINITY_DN5412_c0_g1:384	si_a790	TRINITY_DN5412_c0_g1	374	393	384	-25.80	-19.40	0.751937984496124	6.5	2-10,392-384;12-21,383-374	1-1,393-393[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	GAUUGGAGAG-AGAAGAAUGC&CUAUUUUUCUAUUUUCCAAUC	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN5412_c0_g1_384_TPlot.pdf
TRINITY_DN5412_c0_g1:385	si_a789	TRINITY_DN5412_c0_g1	375	394	385	-24.80	-16.40	0.661290322580645	8	3-11,392-384;13-21,383-375	1-2,394-393[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	AUUGGAGAG-AGAAGAAUGCU&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999999582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN5412_c0_g1_385_TPlot.pdf
TRINITY_DN5414_c0_g1:892	si_s804	TRINITY_DN5414_c0_g1	881	901	892	-27.90	-18.20	0.652329749103943	8	1-11,901-891;13-16,889-886	12-12,890-890[SIL];17-21,885-881[UP3]	.....((((.(((((((((((&))))))))))).)))).....	UAACUGGUACCGAAGAUGAAA&UUUUAUCUUCGUUACCUUUUC	2	0.999999995078885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5414_c0_g1_892_TPlot.pdf
TRINITY_DN5417_c0_g1:1695	si_a774	TRINITY_DN5417_c0_g1	1684	1703	1695	-29.20	-19.20	0.657534246575342	8	1-3,1703-1701;7-20,1698-1685	4-6,1700-1699[AILq];21-21,1684-1684[UP3]	.((((((((((((((..-(((&)))...)))))))))))))).	UGUAGGAGAGUUGAAAU-AUC&GAUUGAUUCAACUCUUCUAUU	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN5417_c0_g1_1695_TPlot.pdf
TRINITY_DN5417_c0_g1:1898	si_s39	TRINITY_DN5417_c0_g1	1886	1907	1898	-22.30	-15.70	0.704035874439462	11	3-11,1905-1897;13-21,1894-1886	1-2,1907-1906[UP5];12-12,1896-1895[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	AAAUCCGGUGAAUUGGAGGUGC&AAAUCUUUAAU-AAUUGGAUUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN5417_c0_g1_1898_TPlot.pdf
TRINITY_DN5417_c0_g1:2138	si_s615	TRINITY_DN5417_c0_g1	2127	2147	2138	-28.30	-20.80	0.734982332155477	8	3-15,2145-2133;17-20,2131-2128	1-2,2147-2146[UP5];16-16,2132-2132[SIL];21-21,2127-2127[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	CGGAUGGUUUGGAUUUGGAUG&UUUUUAAAUCCAAGCGAUCUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s615_TRINITY_DN5417_c0_g1_2138_TPlot.pdf
TRINITY_DN5417_c0_g1:3042	si_s78	TRINITY_DN5417_c0_g1	3030	3051	3042	-26.20	-17.60	0.67175572519084	13.5	5-12,3047-3040;13-20,3038-3031	1-4,3051-3048[UP5];x-x,3039-3039[BULt];21-21,3030-3030[UP3]	.((((((((.((((((((....&....))))))))-)))))))).	CGGAGAAAGUGGAGGAAGCGAA&UUUUUUUCUUUC-CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5417_c0_g1_3042_TPlot.pdf
TRINITY_DN5417_c0_g1:3044	si_s84	TRINITY_DN5417_c0_g1	3030	3054	3044	-32.30	-23.10	0.715170278637771	7	1-6,3054-3049;7-14,3047-3040;15-21,3036-3030	x-x,3048-3048[BULt];x-x,3039-3037[BULt]	(((((((...((((((((.((((((&))))))-))))))))---)))))))	CGGAGAAAGUGGAGGAAGCGAAAGA&UCUUUC-CUUUCUUC---UUCUUCG	3	0.999999985621389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5417_c0_g1_3044_TPlot.pdf
TRINITY_DN5417_c0_g1:3045	si_a785	TRINITY_DN5417_c0_g1	3034	3055	3045	-25.90	-18.00	0.694980694980695	9	1-5,3055-3051;6-6,3049-3049;9-21,3046-3034	x-x,3050-3050[BULt];7-8,3048-3047[SIL]	(((((((((((((..(.(((((&)))))-)..)))))))))))))	GAAAGUGGAGGAAGCGAAAGAG&CUCUU-CUAUUUUUCUAUUUUC	4	0.999999999975193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5417_c0_g1_3045_TPlot.pdf
TRINITY_DN5417_c0_g1:3056	si_s80	TRINITY_DN5417_c0_g1	3041	3066	3056	-28.20	-19.00	0.673758865248227	9	1-9,3066-3058;10-14,3056-3052;15-21,3047-3041	x-x,3057-3057[BULt];x-x,3051-3048[BULt]	(((((((....(((((.(((((((((&)))))))))-)))))----)))))))	GAGGAAGCGAAAGAGGUGAAGAAAGA&UUUUUCUUU-CCUUU----CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5417_c0_g1_3056_TPlot.pdf
TRINITY_DN5417_c0_g1:3062	si_s90	TRINITY_DN5417_c0_g1	3051	3074	3062	-35.30	-24.50	0.694050991501416	10	1-9,3074-3066;10-19,3062-3053	x-x,3065-3063[BULt];20-21,3052-3051[UP3]	..((((((((((...(((((((((&)))))))))---))))))))))..	AAGAGGUGAAGAAAGAGAAGAAGG&CUUUCUUCU---UCUUCGCUUCGG	3	0.999999931658372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5417_c0_g1_3062_TPlot.pdf
TRINITY_DN5417_c0_g1:3065	si_s72	TRINITY_DN5417_c0_g1	3053	3075	3065	-24.10	-16.10	0.66804979253112	9	1-4,3075-3072;6-17,3069-3058;18-21,3056-3053	5-5,3071-3070[AILt];x-x,3057-3057[BULt]	((((.((((((((((((..((((&))))-.))))))))))))-))))	GAGGUGAAGAAAGAGAAGAAGGA&UUCU-AUUUUUUUUCUUU-CCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5417_c0_g1_3065_TPlot.pdf
TRINITY_DN5417_c0_g1:3066	si_s89	TRINITY_DN5417_c0_g1	3052	3075	3066	-35.30	-24.90	0.705382436260623	10	2-10,3074-3066;11-20,3062-3053	1-1,3075-3075[UP5];x-x,3065-3063[BULt];21-21,3052-3052[UP3]	.((((((((((...(((((((((.&.)))))))))---)))))))))).	AGAGGUGAAGAAAGAGAAGAAGGA&CCUUUCUUCU---UCUUCGCUUCG	2	0.999813642315252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5417_c0_g1_3066_TPlot.pdf
TRINITY_DN5417_c0_g1:3067	si_s88	TRINITY_DN5417_c0_g1	3053	3077	3067	-34.80	-25.20	0.724137931034483	10	1-2,3077-3076;3-11,3074-3066;12-21,3062-3053	x-x,3075-3075[BULt];x-x,3065-3063[BULt]	((((((((((...(((((((((.((&))-)))))))))---))))))))))	GAGGUGAAGAAAGAGAAGAAGGAGA&UC-CUUUCUUCU---UCUUCGCUUC	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5417_c0_g1_3067_TPlot.pdf
TRINITY_DN5417_c0_g1:3069	si_s77	TRINITY_DN5417_c0_g1	3058	3078	3069	-25.50	-20.30	0.796078431372549	5	1-12,3078-3067;14-21,3065-3058	13-13,3066-3066[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GAAGAAAGAGAAGAAGGAGAA&UUUUUUUUCUUUCCUUUCUUC	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5417_c0_g1_3069_TPlot.pdf
TRINITY_DN5417_c0_g1:3070	si_s71	TRINITY_DN5417_c0_g1	3059	3079	3070	-25.70	-18.50	0.719844357976654	6.5	1-5,3079-3075;7-19,3073-3061	6-6,3074-3074[SIL];20-21,3060-3059[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	AAGAAAGAGAAGAAGGAGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999991466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5417_c0_g1_3070_TPlot.pdf
TRINITY_DN5417_c0_g1:3071	si_s70	TRINITY_DN5417_c0_g1	3060	3080	3071	-25.80	-18.50	0.717054263565891	6.5	2-6,3079-3075;8-20,3073-3061	1-1,3080-3080[UP5];7-7,3074-3074[SIL];21-21,3060-3060[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAAAGAGAAGAAGGAGAAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.999991597100676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5417_c0_g1_3071_TPlot.pdf
TRINITY_DN5417_c0_g1:3072	si_s69	TRINITY_DN5417_c0_g1	3061	3081	3072	-23.40	-18.50	0.790598290598291	7.5	3-7,3079-3075;9-21,3073-3061	1-2,3081-3080[UP5];8-8,3074-3074[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGAGAAGAAGGAGAAGAA&AACUUCUAUUUUUUUUCUUUC	2	0.984730623737313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5417_c0_g1_3072_TPlot.pdf
TRINITY_DN5417_c0_g1:3075	si_s68	TRINITY_DN5417_c0_g1	3064	3085	3075	-23.10	-15.90	0.688311688311688	10	3-8,3083-3078;10-21,3075-3064	1-2,3085-3084[UP5];9-9,3077-3076[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	AGAGAAGAAGGAGAAGAAGUCU&CAACUUCU-AUUUUUUUUCUUU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5417_c0_g1_3075_TPlot.pdf
TRINITY_DN5419_c0_g1:969	si_a601	TRINITY_DN5419_c0_g1	958	979	969	-30.00	-20.90	0.696666666666667	6.5	2-8,978-972;9-12,970-967;14-21,965-958	1-1,979-979[UP5];x-x,971-971[BULt];13-13,966-966[SIL]	((((((((.((((.(((((((.&.)))))))-)))).))))))))	GAUUGGAGAUGUGCAGAAUUCA&AGAAUUUU-CGCAAUUCCAAUC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN5419_c0_g1_969_TPlot.pdf
TRINITY_DN541_c0_g1:2496	si_a362	TRINITY_DN541_c0_g1	2485	2505	2496	-28.00	-18.20	0.65	14	6-16,2500-2490	1-5,2505-2501[UP5];17-21,2489-2485[UP3]	.....(((((((((((.....&.....))))))))))).....	CGGAAGAUCCGAUCAAUGAAG&CUAUUUUGAUCGGAUCAAAAA	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN541_c0_g1_2496_TPlot.pdf
TRINITY_DN541_c0_g1:3104	si_a112	TRINITY_DN541_c0_g1	3093	3113	3104	-26.20	-17.30	0.66030534351145	17	8-18,3106-3096	1-7,3113-3107[UP5];19-21,3095-3093[UP3]	...(((((((((((.......&.......)))))))))))...	UCUGAGCAAGCUCGGCAAACG&UAAAAUACGAGCUUGUUUUAU	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN541_c0_g1_3104_TPlot.pdf
TRINITY_DN541_c0_g1:4043	si_a659	TRINITY_DN541_c0_g1	4032	4051	4043	-35.20	-25.90	0.735795454545454	7	2-7,4050-4045;10-21,4043-4032	1-1,4051-4051[UP5];8-9,4044-4044[AILq]	((((((((((((.-((((((.&.))))))..))))))))))))	GAAUCGAUGGGCC-UUCCUGG&UCGGGAAAUGCCUAUUGAUUC	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN541_c0_g1_4043_TPlot.pdf
TRINITY_DN541_c0_g1:4474	si_s95	TRINITY_DN541_c0_g1	4461	4483	4474	-36.30	-23.80	0.65564738292011	8.5	2-11,4482-4473;14-18,4470-4466;19-21,4463-4461	1-1,4483-4483[UP5];12-13,4472-4471[SIL];x-x,4465-4464[BULt]	(((..(((((..((((((((((.&.))))))))))..)))))--)))	CCAGCGUCCGCCGUGAAGGAGAU&UUCUUCUUCGCUUCGGAU--UGG	2	0.999748768346625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN541_c0_g1_4474_TPlot.pdf
TRINITY_DN541_c0_g1:4969	si_a327	TRINITY_DN541_c0_g1	4958	4978	4969	-28.40	-19.10	0.672535211267606	16.5	8-21,4971-4958	1-7,4978-4972[UP5]	((((((((((((((.......&.......))))))))))))))	GGGCAGGGGAUGAGCUCAGAG&UGAUUUUUUUAUUCCUUGUCC	4	0.999999818689352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN541_c0_g1_4969_TPlot.pdf
TRINITY_DN541_c0_g1:6983	si_a548	TRINITY_DN541_c0_g1	6972	6993	6983	-27.20	-21.80	0.801470588235294	8	1-3,6993-6991;6-21,6987-6972	4-5,6990-6988[AILt]	((((((((((((((((...(((&)))-..))))))))))))))))	GAGAUGGAGAAAUGGAGAAGAA&UUC-AAUCUAUUUCUUUAUCUC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN541_c0_g1_6983_TPlot.pdf
TRINITY_DN541_c0_g1:6991	si_a784	TRINITY_DN541_c0_g1	6980	7000	6991	-24.70	-19.70	0.797570850202429	6.5	2-8,6999-6993;10-21,6991-6980	1-1,7000-7000[UP5];9-9,6992-6992[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	GAAAUGGAGAAGAAGGAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN541_c0_g1_6991_TPlot.pdf
TRINITY_DN5420_c0_g1:1041	si_a459	TRINITY_DN5420_c0_g1	1028	1050	1041	-23.20	-15.90	0.685344827586207	4	1-13,1050-1038;14-15,1036-1035;17-21,1032-1028	x-x,1037-1037[BULt];16-16,1034-1033[AILt]	(((((..((.(((((((((((((&)))))))))))))-))-.)))))	UUACAAGAUCUGUAUAUAACAAC&GUUGUUAUAUAUA-AU-AUGUAA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN5420_c0_g1_1041_TPlot.pdf
TRINITY_DN5420_c0_g1:318	si_s828	TRINITY_DN5420_c0_g1	305	327	318	-21.90	-14.40	0.657534246575343	7	2-14,326-314;15-19,311-307	1-1,327-327[UP5];x-x,313-312[BULt];20-21,306-305[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	UGUCAAAGUUUGUUUUUCGUUGA&AUAAUGAAAAACAA--UUUGAAA	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN5420_c0_g1_318_TPlot.pdf
TRINITY_DN5420_c0_g1:319	si_s827	TRINITY_DN5420_c0_g1	306	328	319	-21.90	-14.40	0.657534246575343	8	3-15,326-314;16-20,311-307	1-2,328-327[UP5];x-x,313-312[BULt];21-21,306-306[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	GUCAAAGUUUGUUUUUCGUUGAU&AAUAAUGAAAAACAA--UUUGAA	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN5420_c0_g1_319_TPlot.pdf
TRINITY_DN5420_c0_g1:329	si_a345	TRINITY_DN5420_c0_g1	318	338	329	-26.90	-17.50	0.650557620817844	8	1-4,338-335;6-16,333-323	5-5,334-334[SIL];17-21,322-318[UP3]	.....(((((((((((.((((&)))).))))))))))).....	UUUUCGUUGAUAUUUUGGGGA&UCCCGAAAAUAUUAAUUCUAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN5420_c0_g1_329_TPlot.pdf
TRINITY_DN5421_c0_g1:2002	si_s259	TRINITY_DN5421_c0_g1	1991	2011	2002	-23.60	-15.80	0.669491525423729	7	1-8,2011-2004;10-13,2002-1999;16-20,1996-1992	9-9,2003-2003[SIL];14-15,1998-1997[SIL];21-21,1991-1991[UP3]	.(((((..((((.((((((((&)))))))).))))..))))).	CUUUUUGAGAGUCAUGUGUCG&CGAUAUAUUACUCAAAAAAAU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s259_TRINITY_DN5421_c0_g1_2002_TPlot.pdf
TRINITY_DN5421_c0_g1:3604	si_a76	TRINITY_DN5421_c0_g1	3593	3613	3604	-21.20	-13.80	0.650943396226415	11.5	5-18,3609-3596	1-4,3613-3610[UP5];19-21,3595-3593[UP3]	...((((((((((((((....&....))))))))))))))...	UCAAGUAAUGGAAAACACGGC&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN5421_c0_g1_3604_TPlot.pdf
TRINITY_DN5421_c0_g1:3836	si_s1	TRINITY_DN5421_c0_g1	3825	3845	3836	-18.70	-13.40	0.716577540106952	6.5	1-7,3845-3839;9-19,3837-3827	8-8,3838-3838[SIL];20-21,3826-3825[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	UUGUGAUAAGUGAGAUAAAAG&UUUUUAUAUUACUUAUUAUUA	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN5421_c0_g1_3836_TPlot.pdf
TRINITY_DN5422_c0_g1:365	si_a808	TRINITY_DN5422_c0_g1	354	373	365	-34.90	-23.30	0.667621776504298	6	1-4,373-370;6-17,369-358	5-5,x-x[BULq];18-21,357-354[UP3]	....((((((((((((-((((&)))).))))))))))))....	GACGUCUUCUUCGCUU-GGAU&AUCCGAAGCGAAGAAGAAGAA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN5422_c0_g1_365_TPlot.pdf
TRINITY_DN5422_c0_g1:375	si_s611	TRINITY_DN5422_c0_g1	364	386	375	-28.20	-19.34	0.685815602836879	15	2-7,385-380;12-21,373-364	1-1,386-386[UP5];8-11,379-374[AILt]	((((((((((......((((((.&.))))))--....))))))))))	UCGCUUGGAUCGAUCUGGAAGAG&AUCUUUU--UUAAAUCCAAGCGA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN5422_c0_g1_375_TPlot.pdf
TRINITY_DN5422_c0_g1:381	si_a764	TRINITY_DN5422_c0_g1	368	390	381	-28.90	-19.10	0.660899653979239	10.5	1-4,390-387;6-10,385-381;11-21,378-368	5-5,386-386[SIL];x-x,380-379[BULt]	(((((((((((..(((((.((((&)))).)))))--)))))))))))	UUGGAUCGAUCUGGAAGAGCCGG&UUGGGUUUUU--GAUUGAUUCAA	3	0.999999972517613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN5422_c0_g1_381_TPlot.pdf
TRINITY_DN5422_c0_g1:756	si_a718	TRINITY_DN5422_c0_g1	741	765	756	-32.60	-21.40	0.656441717791411	21.5	7-12,759-754;13-21,749-741	1-6,765-760[UP5];x-x,753-750[BULt]	(((((((((....((((((......&......))))))----)))))))))	GUGCCCGAGAAUUUGGCGAAGACCG&AAAUAAUCGUUA----CUCGGGCAU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN5422_c0_g1_756_TPlot.pdf
TRINITY_DN54250_c0_g1:1140	si_a69	TRINITY_DN54250_c0_g1	1129	1149	1140	-24.00	-16.10	0.670833333333333	7	1-16,1149-1134;18-19,1132-1131	17-17,1133-1133[SIL];20-21,1130-1129[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	UAGACAGAUGGUUUGAAGGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999829269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN54250_c0_g1_1140_TPlot.pdf
TRINITY_DN54250_c0_g1:1182	si_s79	TRINITY_DN54250_c0_g1	1171	1191	1182	-26.20	-18.20	0.694656488549618	6.5	2-5,1190-1187;8-20,1184-1172	1-1,1191-1191[UP5];6-7,1186-1185[SIL];21-21,1171-1171[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	UAGAAGAAGGGAAAUUAAAAU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN54250_c0_g1_1182_TPlot.pdf
TRINITY_DN54250_c0_g1:1184	si_s77	TRINITY_DN54250_c0_g1	1173	1193	1184	-25.50	-17.10	0.670588235294118	9.5	4-7,1190-1187;10-21,1184-1173	1-3,1193-1191[UP5];8-9,1186-1185[SIL]	((((((((((((..((((...&...))))..))))))))))))	GAAGAAGGGAAAUUAAAAUAU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN54250_c0_g1_1184_TPlot.pdf
TRINITY_DN5425_c0_g2:219	si_s437	TRINITY_DN5425_c0_g2	208	228	219	-19.70	-13.90	0.705583756345178	7	1-4,228-225;6-14,223-215;16-21,213-208	5-5,224-224[SIL];15-15,214-214[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	UUGUGUUUAGUGUGUAUUUGU&AUAAUUACAUAUUAUAUAUAA	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN5425_c0_g2_219_TPlot.pdf
TRINITY_DN54268_c0_g1:701	si_s705	TRINITY_DN54268_c0_g1	690	708	701	-31.40	-21.60	0.687898089171975	8.5	1-7,708-702;10-20,701-691	8-9,x-x[BULq];21-21,690-690[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	AUCCCUGUUCAU--GUAGAUU&GAUUUAUUAGUGAACAGGGAA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN54268_c0_g1_701_TPlot.pdf
TRINITY_DN5427_c0_g1:1157	si_a633	TRINITY_DN5427_c0_g1	1146	1166	1157	-26.40	-17.30	0.65530303030303	9	4-17,1163-1150;19-21,1148-1146	1-3,1166-1164[UP5];18-18,1149-1149[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UACCCAAAAGGAUUGACAAAG&UUAUGUCGAUUUUUUUGAGUA	3	0.999999999981952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5427_c0_g1_1157_TPlot.pdf
TRINITY_DN54286_c0_g1:432	si_a283	TRINITY_DN54286_c0_g1	421	441	432	-28.30	-18.40	0.65017667844523	10	4-17,438-425;20-21,422-421	1-3,441-439[UP5];18-19,424-423[SIL]	((..((((((((((((((...&...))))))))))))))..))	UUGUAAUCCGAGUGAUUUGGG&AAAAGAUCGCUUGGAUUUAAA	4	0.999999559533988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN54286_c0_g1_432_TPlot.pdf
TRINITY_DN5429_c0_g2:688	si_s74	TRINITY_DN5429_c0_g2	677	697	688	-25.00	-16.50	0.66	11.5	5-20,693-678	1-4,697-694[UP5];21-21,677-677[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAAGGGAAGAAGGGAAUUCA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5429_c0_g2_688_TPlot.pdf
TRINITY_DN5429_c0_g2:689	si_s73	TRINITY_DN5429_c0_g2	678	698	689	-24.00	-16.50	0.6875	12.5	6-21,693-678	1-5,698-694[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGGGAAGAAGGGAAUUCAC&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5429_c0_g2_689_TPlot.pdf
TRINITY_DN5429_c0_g2:690	si_s72	TRINITY_DN5429_c0_g2	679	702	690	-24.10	-16.12	0.668879668049792	13.5	1-4,702-699;7-21,693-679	5-6,698-694[AILt]	(((((((((((((((.....((((&))))---..)))))))))))))))	AAGGGAAGAAGGGAAUUCACAGAA&UUCU---AUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5429_c0_g2_690_TPlot.pdf
TRINITY_DN5429_c0_g2:692	si_s79	TRINITY_DN5429_c0_g2	681	706	692	-26.20	-17.20	0.656488549618321	18.5	5-8,702-699;9-21,693-681	1-4,706-703[UP5];x-x,698-694[BULt]	(((((((((((((.....((((....&....))))-----)))))))))))))	GGGAAGAAGGGAAUUCACAGAAUUGC&UUUUUUCU-----UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5429_c0_g2_692_TPlot.pdf
TRINITY_DN542_c0_g1:3359	si_a458	TRINITY_DN542_c0_g1	3348	3369	3359	-23.80	-15.80	0.663865546218487	8.5	1-9,3369-3361;10-11,3359-3358;13-20,3356-3349	x-x,3360-3360[BULt];12-12,3357-3357[SIL];21-21,3348-3348[UP3]	.((((((((.((.(((((((((&)))))))))-)).)))))))).	AGCAUAUUACAUCAUGACGGCA&UGUUGUUAU-AUAUAAUAUGUA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN542_c0_g1_3359_TPlot.pdf
TRINITY_DN542_c0_g1:3383	si_a326	TRINITY_DN542_c0_g1	3372	3392	3383	-26.20	-18.40	0.702290076335878	6.5	2-2,3391-3391;4-11,3389-3382;13-21,3380-3372	1-1,3392-3392[UP5];3-3,3390-3390[SIL];12-12,3381-3381[SIL]	(((((((((.((((((((.(.&.).)))))))).)))))))))	GACGAGGAAGAAGAAAAUGAA&AUGAUUUUUUUAUUCCUUGUC	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN542_c0_g1_3383_TPlot.pdf
TRINITY_DN542_c0_g1:3385	si_s84	TRINITY_DN542_c0_g1	3374	3394	3385	-32.30	-21.90	0.678018575851393	6.5	2-5,3393-3390;8-21,3387-3374	1-1,3394-3394[UP5];6-7,3389-3388[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	CGAGGAAGAAGAAAAUGAAGU&UCUUUCCUUUCUUCUUCUUCG	2	0.999999999866793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN542_c0_g1_3385_TPlot.pdf
TRINITY_DN542_c0_g1:3489	si_s73	TRINITY_DN542_c0_g1	3477	3499	3489	-24.00	-17.20	0.716666666666667	5.5	1-3,3499-3497;4-17,3495-3482;18-21,3480-3477	x-x,3496-3496[BULt];x-x,3481-3481[BULt]	((((.((((((((((((((.(((&)))-))))))))))))))-))))	AAAGAGGAAGAAGAAAAAUCGGA&UCU-AUUUUUUUUCUUUC-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN542_c0_g1_3489_TPlot.pdf
TRINITY_DN542_c0_g1:3571	si_a51	TRINITY_DN542_c0_g1	3558	3580	3571	-41.10	-27.20	0.661800486618005	5.5	1-14,3580-3567;15-17,3565-3563;18-18,3561-3561;20-21,3559-3558	x-x,3566-3566[BULt];x-x,3562-3562[BULt];19-19,3560-3560[SIL]	((.(.(((.((((((((((((((&))))))))))))))-)))-).))	GAUGUUGAGGUCGAUUCCUGGAC&GUCUAGGAGUCGAC-UCG-CUUC	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN542_c0_g1_3571_TPlot.pdf
TRINITY_DN542_c0_g1:3572	si_a50	TRINITY_DN542_c0_g1	3561	3581	3572	-41.50	-27.20	0.655421686746988	8	1-16,3581-3566	17-21,3565-3561[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUUGAGGUCGAUUCCUGGACU&GGUCUAGGAGUCGACUCGCUU	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN542_c0_g1_3572_TPlot.pdf
TRINITY_DN542_c0_g1:3575	si_a47	TRINITY_DN542_c0_g1	3564	3584	3575	-41.20	-27.80	0.674757281553398	8	3-19,3582-3566	1-2,3584-3583[UP5];20-21,3565-3564[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GAGGUCGAUUCCUGGACUUUU&GUAGGUCUAGGAGUCGACUCG	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN542_c0_g1_3575_TPlot.pdf
TRINITY_DN542_c0_g1:3577	si_a45	TRINITY_DN542_c0_g1	3566	3592	3577	-41.60	-28.80	0.692307692307692	16	2-4,3591-3589;5-21,3582-3566	1-1,3592-3592[UP5];x-x,3588-3583[BULt]	(((((((((((((((((......(((.&.)))------)))))))))))))))))	GGUCGAUUCCUGGACUUUUGAUGACCC&CGGU------AGGUCUAGGAGUCGACU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a45_TRINITY_DN542_c0_g1_3577_TPlot.pdf
TRINITY_DN542_c0_g1:3619	si_s76	TRINITY_DN542_c0_g1	3607	3628	3619	-23.60	-15.50	0.656779661016949	7	1-13,3628-3616;14-18,3614-3610	x-x,3615-3615[BULt];19-21,3609-3607[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	UGAAAAGGCAAAGGAAAGAAGU&AUUUUUUUUCUUU-CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN542_c0_g1_3619_TPlot.pdf
TRINITY_DN542_c0_g1:3620	si_a66	TRINITY_DN542_c0_g1	3610	3629	3620	-26.70	-18.70	0.700374531835206	7	1-10,3629-3620;14-21,3617-3610	11-13,3619-3618[AILq]	((((((((..-((((((((((&))))))))))...))))))))	AAAGGCAAAG-GAAAGAAGUG&CGCUUCUUUCAAAUUGUUUUU	2	0.999442797370729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN542_c0_g1_3620_TPlot.pdf
TRINITY_DN542_c0_g1:3621	si_s74	TRINITY_DN542_c0_g1	3609	3630	3621	-25.00	-19.40	0.776	6	1-15,3630-3616;16-20,3614-3610	x-x,3615-3615[BULt];21-21,3609-3609[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	AAAAGGCAAAGGAAAGAAGUGG&CUAUUUUUUUUCUUU-CCUUUC	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN542_c0_g1_3621_TPlot.pdf
TRINITY_DN542_c0_g1:3622	si_s73	TRINITY_DN542_c0_g1	3610	3631	3622	-24.00	-20.80	0.866666666666667	5	1-16,3631-3616;17-21,3614-3610	x-x,3615-3615[BULt]	(((((.((((((((((((((((&))))))))))))))))-)))))	AAAGGCAAAGGAAAGAAGUGGA&UCUAUUUUUUUUCUUU-CCUUU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN542_c0_g1_3622_TPlot.pdf
TRINITY_DN542_c0_g1:3624	si_s71	TRINITY_DN542_c0_g1	3612	3633	3624	-25.70	-19.20	0.747081712062257	7.5	3-18,3631-3616;19-21,3614-3612	1-2,3633-3632[UP5];x-x,3615-3615[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	AGGCAAAGGAAAGAAGUGGAUU&CUUCUAUUUUUUUUCUUU-CCU	2	0.999829191196717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN542_c0_g1_3624_TPlot.pdf
TRINITY_DN542_c0_g1:3631	si_a544	TRINITY_DN542_c0_g1	3620	3640	3631	-28.90	-18.90	0.653979238754325	8.5	1-5,3640-3636;8-20,3633-3621	6-7,3635-3634[SIL];21-21,3620-3620[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	GAAAGAAGUGGAUUAUGCUGA&UCGGUUCAAUCUAUUUCUUUA	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN542_c0_g1_3631_TPlot.pdf
TRINITY_DN542_c0_g1:3632	si_s63	TRINITY_DN542_c0_g1	3621	3641	3632	-25.80	-18.58	0.72015503875969	8.5	1-7,3641-3635;11-21,3631-3621	8-10,3634-3632[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	AAAGAAGUGGAUUAUGCUGAC&GUUAGCAACUUCUAUUUUUUU	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN542_c0_g1_3632_TPlot.pdf
TRINITY_DN542_c0_g1:3648	si_a65	TRINITY_DN542_c0_g1	3637	3662	3648	-27.70	-18.20	0.657039711191336	15.5	1-9,3662-3654;10-19,3648-3639	x-x,3653-3649[BULt];20-21,3638-3637[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	CUGACAGUUUGACAGAAAAGGAGUGG&UCGCUUCUU-----UCAAAUUGUUUU	4	0.999999999580479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN542_c0_g1_3648_TPlot.pdf
TRINITY_DN542_c0_g1:3728	si_s88	TRINITY_DN542_c0_g1	3717	3737	3728	-34.80	-22.70	0.652298850574713	3.5	1-12,3737-3726;14-15,3724-3723;17-21,3721-3717	13-13,3725-3725[SIL];16-16,3722-3722[SIL]	(((((.((.((((((((((((&)))))))))))).)).)))))	GAAGUUAAAAAGAAGAGAGGA&UCCUUUCUUCUUCUUCGCUUC	2	0.999999999999543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN542_c0_g1_3728_TPlot.pdf
TRINITY_DN542_c0_g1:3731	si_s85	TRINITY_DN542_c0_g1	3715	3740	3731	-33.80	-23.60	0.698224852071006	9	1-15,3740-3726;16-19,3720-3717	x-x,3725-3721[BULt];20-21,3716-3715[UP3]	..((((.....(((((((((((((((&)))))))))))))))-----))))..	AGGAAGUUAAAAAGAAGAGAGGAAGG&CUUUCCUUUCUUCUU-----CUUCGC	4	0.999999995400848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN542_c0_g1_3731_TPlot.pdf
TRINITY_DN542_c0_g1:3732	si_s84	TRINITY_DN542_c0_g1	3716	3741	3732	-32.30	-25.20	0.780185758513932	8	1-16,3741-3726;17-20,3720-3717	x-x,3725-3721[BULt];21-21,3716-3716[UP3]	.((((.....((((((((((((((((&))))))))))))))))-----)))).	GGAAGUUAAAAAGAAGAGAGGAAGGA&UCUUUCCUUUCUUCUU-----CUUCG	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN542_c0_g1_3732_TPlot.pdf
TRINITY_DN542_c0_g1:3733	si_s83	TRINITY_DN542_c0_g1	3717	3742	3733	-30.90	-25.50	0.825242718446602	7	1-17,3742-3726;18-21,3720-3717	x-x,3725-3721[BULt]	((((.....(((((((((((((((((&)))))))))))))))))-----))))	GAAGUUAAAAAGAAGAGAGGAAGGAA&UUCUUUCCUUUCUUCUU-----CUUC	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN542_c0_g1_3733_TPlot.pdf
TRINITY_DN542_c0_g1:3736	si_s80	TRINITY_DN542_c0_g1	3725	3745	3736	-28.20	-26.60	0.943262411347518	3.5	1-20,3745-3726	21-21,3725-3725[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AAAGAAGAGAGGAAGGAAGAA&UUUUUCUUUCCUUUCUUCUUC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN542_c0_g1_3736_TPlot.pdf
TRINITY_DN542_c0_g1:3737	si_s79	TRINITY_DN542_c0_g1	3726	3746	3737	-26.20	-26.80	1	3.5	2-21,3745-3726	1-1,3746-3746[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AAGAAGAGAGGAAGGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN542_c0_g1_3737_TPlot.pdf
TRINITY_DN542_c0_g1:3738	si_s78	TRINITY_DN542_c0_g1	3727	3747	3738	-26.20	-27.60	1	3.5	1-21,3747-3727	NA	(((((((((((((((((((((&)))))))))))))))))))))	AGAAGAGAGGAAGGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN542_c0_g1_3738_TPlot.pdf
TRINITY_DN542_c0_g1:3741	si_s75	TRINITY_DN542_c0_g1	3730	3750	3741	-24.00	-23.10	0.9625	6.5	3-21,3748-3730	1-2,3750-3749[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAGAGGAAGGAAGAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN542_c0_g1_3741_TPlot.pdf
TRINITY_DN542_c0_g1:3742	si_s74	TRINITY_DN542_c0_g1	3731	3751	3742	-25.00	-22.80	0.912	5	1-2,3751-3750;4-21,3748-3731	3-3,3749-3749[SIL]	((((((((((((((((((.((&)).))))))))))))))))))	GAGAGGAAGGAAGAAGAAAAG&CUAUUUUUUUUCUUUCCUUUC	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN542_c0_g1_3742_TPlot.pdf
TRINITY_DN542_c0_g1:3744	si_s72	TRINITY_DN542_c0_g1	3733	3753	3744	-24.10	-20.30	0.842323651452282	6	2-4,3752-3750;6-21,3748-3733	1-1,3753-3753[UP5];5-5,3749-3749[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GAGGAAGGAAGAAGAAAAGAC&UUCUAUUUUUUUUCUUUCCUU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN542_c0_g1_3744_TPlot.pdf
TRINITY_DN542_c0_g1:3745	si_s71	TRINITY_DN542_c0_g1	3734	3754	3745	-25.70	-19.20	0.747081712062257	7.5	3-5,3752-3750;7-21,3748-3734	1-2,3754-3753[UP5];6-6,3749-3749[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AGGAAGGAAGAAGAAAAGACG&CUUCUAUUUUUUUUCUUUCCU	2	0.999718989854178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN542_c0_g1_3745_TPlot.pdf
TRINITY_DN54304_c0_g1:288	si_a25	TRINITY_DN54304_c0_g1	286	297	288	-26.50	-17.90	0.675471698113208	5	11-21,296-286	10-10,297-297[SIL]	(((((((((((.&.)))))))))))	GGUCUUGGAGCA&UUUAUUUUUAGU	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN54304_c0_g1_288_TPlot.pdf
TRINITY_DN54308_c0_g1:738	si_s548	TRINITY_DN54308_c0_g1	727	747	738	-22.50	-18.20	0.808888888888889	4.5	1-20,747-728	21-21,727-727[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UGUAUUGAUUUUAUUUUGGUU&GAUCAAAAUAGAAUUAAUAUU	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN54308_c0_g1_738_TPlot.pdf
TRINITY_DN54309_c0_g1:739	si_a784	TRINITY_DN54309_c0_g1	728	749	739	-24.70	-16.10	0.651821862348178	6.5	1-4,749-746;6-13,743-736;15-21,734-728	5-5,745-744[AILt];14-14,735-735[SIL]	(((((((.((((((((..((((&))))-.)))))))).)))))))	AAAGUAGUAGAAUAGAUUGAGU&ACUC-UUCUAUUUUUCUAUUUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN54309_c0_g1_739_TPlot.pdf
TRINITY_DN5430_c0_g1:484	si_a813	TRINITY_DN5430_c0_g1	471	493	484	-32.90	-22.80	0.693009118541034	6	1-12,493-482;13-18,479-474;20-21,472-471	x-x,481-480[BULt];19-19,473-473[SIL]	((.((((((..((((((((((((&))))))))))))--)))))).))	UUGCUUUCUAUUCUUCUUUGCUU&AAGCGAAGAAGA--AGAAAGGAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN5430_c0_g1_484_TPlot.pdf
TRINITY_DN5430_c0_g1:485	si_a812	TRINITY_DN5430_c0_g1	472	494	485	-34.80	-23.30	0.669540229885058	4.5	1-13,494-482;14-19,479-474;21-21,472-472	x-x,481-480[BULt];20-20,473-473[SIL]	(.((((((..(((((((((((((&)))))))))))))--)))))).)	UGCUUUCUAUUCUUCUUUGCUUU&GAAGCGAAGAAGA--AGAAAGGA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN5430_c0_g1_485_TPlot.pdf
TRINITY_DN5430_c0_g1:487	si_a810	TRINITY_DN5430_c0_g1	474	496	487	-35.30	-25.70	0.728045325779037	5	2-15,495-482;16-21,479-474	1-1,496-496[UP5];x-x,481-480[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	CUUUCUAUUCUUCUUUGCUUUGA&CCGAAGCGAAGAAGA--AGAAAG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a810_TRINITY_DN5430_c0_g1_487_TPlot.pdf
TRINITY_DN5430_c0_g1:488	si_a809	TRINITY_DN5430_c0_g1	475	497	488	-34.70	-22.70	0.654178674351585	7	3-16,495-482;17-21,479-475	1-2,497-496[UP5];x-x,481-480[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	UUUCUAUUCUUCUUUGCUUUGAU&UCCGAAGCGAAGAAGA--AGAAA	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN5430_c0_g1_488_TPlot.pdf
TRINITY_DN54314_c0_g1:350	si_a429	TRINITY_DN54314_c0_g1	339	360	350	-32.00	-21.90	0.684375	6.5	1-7,360-354;8-12,352-348;14-19,346-341	x-x,353-353[BULt];13-13,347-347[SIL];20-21,340-339[UP3]	..((((((.(((((.(((((((&)))))))-))))).))))))..	UCAUCUAAGGGAUCUCUAUGUU&AAUAUAG-GAUCCGUUGGAUAU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN54314_c0_g1_350_TPlot.pdf
TRINITY_DN54314_c0_g1:352	si_a427	TRINITY_DN54314_c0_g1	341	362	352	-31.80	-21.90	0.688679245283019	7.5	3-9,360-354;10-14,352-348;16-21,346-341	1-2,362-361[UP5];x-x,353-353[BULt];15-15,347-347[SIL]	((((((.(((((.(((((((..&..)))))))-))))).))))))	AUCUAAGGGAUCUCUAUGUUAG&UAAAUAUAG-GAUCCGUUGGAU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN54314_c0_g1_352_TPlot.pdf
TRINITY_DN54314_c0_g1:354	si_a426	TRINITY_DN54314_c0_g1	342	363	354	-31.80	-20.80	0.654088050314465	9.5	4-10,360-354;11-15,352-348;17-21,346-342	1-3,363-361[UP5];x-x,353-353[BULt];16-16,347-347[SIL]	(((((.(((((.(((((((...&...)))))))-))))).)))))	UCUAAGGGAUCUCUAUGUUAGG&AUAAAUAUAG-GAUCCGUUGGA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN54314_c0_g1_354_TPlot.pdf
TRINITY_DN54315_c0_g1:1232	si_a493	TRINITY_DN54315_c0_g1	1221	1241	1232	-29.50	-19.30	0.654237288135593	11.5	6-14,1236-1228;16-21,1226-1221	1-5,1241-1237[UP5];15-15,1227-1227[SIL]	((((((.(((((((((.....&.....))))))))).))))))	AAGACGCAGAGCGACAAGACG&GAAUAUGUCGUUUUUCGUCUU	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN54315_c0_g1_1232_TPlot.pdf
TRINITY_DN54315_c0_g1:1301	si_s372	TRINITY_DN54315_c0_g1	1289	1312	1301	-45.70	-31.70	0.693654266958424	9.5	3-6,1310-1307;7-11,1304-1300;12-21,1298-1289	1-2,1312-1311[UP5];x-x,1306-1305[BULt];x-x,1299-1299[BULt]	((((((((((.(((((..((((..&..))))--)))))-))))))))))	GCGGACAUGCAGAGCGCCAUCGAC&ACCGAU--CGCUC-GCGUGUCCGC	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN54315_c0_g1_1301_TPlot.pdf
TRINITY_DN54315_c0_g1:1598	si_s372	TRINITY_DN54315_c0_g1	1588	1607	1598	-45.70	-30.20	0.660831509846827	7	2-4,1606-1604;6-11,1602-1597;13-20,1596-1589	1-1,1607-1607[UP5];5-5,1603-1603[SIL];12-12,x-x[BULq];21-21,1588-1588[UP3]	.((((((((-((((((.(((.&.))).)))))).)))))))).	ACGGACACG-GAGCGGACGGC&ACCGAUCGCUCGCGUGUCCGC	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN54315_c0_g1_1598_TPlot.pdf
TRINITY_DN54315_c0_g1:954	si_s634	TRINITY_DN54315_c0_g1	943	963	954	-38.30	-25.70	0.671018276762402	7.5	1-17,963-947	18-21,946-943[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGCAGUGAGCGCCUACGAGGA&UUUUCGUAGGCGUUUGCCCUC	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN54315_c0_g1_954_TPlot.pdf
TRINITY_DN54315_c0_g1:955	si_s633	TRINITY_DN54315_c0_g1	944	964	955	-37.90	-28.00	0.738786279683377	6.5	1-18,964-947	19-21,946-944[UP3]	...((((((((((((((((((&))))))))))))))))))...	GCAGUGAGCGCCUACGAGGAG&CUUUUCGUAGGCGUUUGCCCU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN54315_c0_g1_955_TPlot.pdf
TRINITY_DN54315_c0_g1:956	si_s632	TRINITY_DN54315_c0_g1	945	965	956	-38.20	-28.00	0.732984293193717	6.5	2-19,964-947	1-1,965-965[UP5];20-21,946-945[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAGUGAGCGCCUACGAGGAGC&UCUUUUCGUAGGCGUUUGCCC	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN54315_c0_g1_956_TPlot.pdf
TRINITY_DN54315_c0_g1:957	si_s631	TRINITY_DN54315_c0_g1	946	966	957	-36.00	-28.00	0.777777777777778	7.5	3-20,964-947	1-2,966-965[UP5];21-21,946-946[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGUGAGCGCCUACGAGGAGCC&AUCUUUUCGUAGGCGUUUGCC	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN54315_c0_g1_957_TPlot.pdf
TRINITY_DN54315_c0_g1:959	si_s629	TRINITY_DN54315_c0_g1	948	967	959	-34.60	-25.80	0.745664739884393	8	1-2,967-966;5-20,964-949	3-4,965-965[AILq];21-21,948-948[UP3]	.((((((((((((((((.-((&))..)))))))))))))))).	UGAGCGCCUACGAGGAGC-CG&CGAUCUUUUCGUAGGCGUUUG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN54315_c0_g1_959_TPlot.pdf
TRINITY_DN54315_c0_g1:960	si_s628	TRINITY_DN54315_c0_g1	949	968	960	-35.40	-25.70	0.725988700564972	8	2-3,967-966;6-21,964-949	1-1,968-968[UP5];4-5,965-965[AILq]	((((((((((((((((.-((.&.))..))))))))))))))))	GAGCGCCUACGAGGAGC-CGA&GCGAUCUUUUCGUAGGCGUUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN54315_c0_g1_960_TPlot.pdf
TRINITY_DN54317_c0_g1:271	si_a611	TRINITY_DN54317_c0_g1	259	283	271	-36.40	-25.20	0.692307692307692	10	1-9,283-275;10-14,271-267;16-21,264-259	x-x,274-272[BULt];15-15,266-265[AILt]	((((((..(((((...(((((((((&)))))))))---)))))-.))))))	ACGCCUUCGUUGAGCCUUGGAGUUG&CAAUUCCAA---UCGAC-UAGGCGU	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN54317_c0_g1_271_TPlot.pdf
TRINITY_DN54319_c0_g1:429	si_a352	TRINITY_DN54319_c0_g1	417	438	429	-22.50	-14.70	0.653333333333333	8	1-10,438-429;11-18,427-420	x-x,428-428[BULt];19-21,419-417[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	AAGCGAAGUAGAAGUUGAUAUU&AAUAUUAAUU-CUAUUUUGAUC	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN54319_c0_g1_429_TPlot.pdf
TRINITY_DN54319_c0_g1:431	si_a350	TRINITY_DN54319_c0_g1	419	440	431	-20.30	-15.00	0.738916256157635	9	3-12,438-429;13-20,427-420	1-2,440-439[UP5];x-x,428-428[BULt];21-21,419-419[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	GCGAAGUAGAAGUUGAUAUUGU&AAAAUAUUAAUU-CUAUUUUGA	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN54319_c0_g1_431_TPlot.pdf
TRINITY_DN5431_c0_g1:5579	si_a68	TRINITY_DN5431_c0_g1	5568	5588	5579	-25.40	-18.10	0.71259842519685	7	1-11,5588-5578;13-13,5576-5576;15-21,5574-5568	12-12,5577-5577[SIL];14-14,5575-5575[SIL]	(((((((.(.(((((((((((&))))))))))).).)))))))	UGAAAAGGGCUUUGGAGGGAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5431_c0_g1_5579_TPlot.pdf
TRINITY_DN54322_c0_g1:2726	si_s380	TRINITY_DN54322_c0_g1	2715	2735	2726	-40.00	-27.70	0.6925	9.5	2-7,2734-2729;9-16,2727-2720	1-1,2735-2735[UP5];8-8,2728-2728[SIL];17-21,2719-2715[UP3]	.....((((((((.((((((.&.)))))).)))))))).....	GCAAAGAGGCGGGGACGCGAA&CUCGCGUGUCCGCCUUACAUU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN54322_c0_g1_2726_TPlot.pdf
TRINITY_DN54322_c0_g1:2727	si_s379	TRINITY_DN54322_c0_g1	2716	2737	2727	-42.50	-29.70	0.698823529411765	9.5	1-3,2737-2735;4-8,2733-2729;10-17,2727-2720	x-x,2734-2734[BULt];9-9,2728-2728[SIL];18-21,2719-2716[UP3]	....((((((((.(((((.(((&)))-))))).))))))))....	CAAAGAGGCGGGGACGCGAAGC&GCU-CGCGUGUCCGCCUUACAU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN54322_c0_g1_2727_TPlot.pdf
TRINITY_DN54322_c0_g1:2731	si_s375	TRINITY_DN54322_c0_g1	2720	2741	2731	-44.10	-29.50	0.668934240362812	11	5-7,2737-2735;8-12,2733-2729;14-21,2727-2720	1-4,2741-2738[UP5];x-x,2734-2734[BULt];13-13,2728-2728[SIL]	((((((((.(((((.(((....&....)))-))))).))))))))	GAGGCGGGGACGCGAAGCCUGG&GAUCGCU-CGCGUGUCCGCCUU	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN54322_c0_g1_2731_TPlot.pdf
TRINITY_DN54326_c0_g1:706	si_s77	TRINITY_DN54326_c0_g1	695	715	706	-25.50	-16.70	0.654901960784314	9.5	1-4,715-712;6-10,710-706;13-20,703-696	5-5,711-711[SIL];11-12,705-704[SIL];21-21,695-695[UP3]	.((((((((..(((((.((((&)))).)))))..)))))))).	AAAGAGAGGUUAGAAAUGAGA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN54326_c0_g1_706_TPlot.pdf
TRINITY_DN54326_c0_g1:938	si_s26	TRINITY_DN54326_c0_g1	927	948	938	-26.70	-17.70	0.662921348314607	8	2-7,947-942;9-9,940-940;10-20,938-928	1-1,948-948[UP5];8-8,941-941[SIL];x-x,939-939[BULt];21-21,927-927[UP3]	.(((((((((((.(.((((((.&.)))))).)-))))))))))).	UGAGAUUUGGUUCGGAAUCAGG&AUUGAUUGC-AACUAAAUCUUU	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN54326_c0_g1_938_TPlot.pdf
TRINITY_DN54328_c0_g1:14	si_a612	TRINITY_DN54328_c0_g1	2	33	14	-35.10	-23.10	0.658119658119658	23	2-7,32-27;8-17,16-7;18-20,5-3	1-1,33-33[UP5];x-x,26-17[BULt];x-x,6-6[BULt];21-21,2-2[UP3]	.(((.((((((((((..........((((((.&.))))))----------))))))))))-))).	CACGCCCUAGUCGAUAAUCUCUCCUUGGAAUG&AAUUCCA----------AUCGACUAGG-CGUA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN54328_c0_g1_14_TPlot.pdf
TRINITY_DN54328_c0_g1:380	si_a324	TRINITY_DN54328_c0_g1	369	390	380	-27.50	-17.90	0.650909090909091	10	1-2,390-389;4-7,387-384;8-20,382-370	3-3,388-388[SIL];x-x,383-383[BULt];21-21,369-369[UP3]	.(((((((((((((.((((.((&)).))))-))))))))))))).	GAGGGAGUAAAGAGUGUCGAGG&CCAUGAU-UUUUUUAUUCCUUG	4	0.999999818689352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN54328_c0_g1_380_TPlot.pdf
TRINITY_DN54328_c0_g1:603	si_s380	TRINITY_DN54328_c0_g1	591	612	603	-40.00	-26.50	0.6625	8	1-10,612-603;13-16,600-597;17-18,595-594	11-12,602-601[SIL];x-x,596-596[BULt];19-21,593-591[UP3]	...((.((((..((((((((((&))))))))))..))))-))...	CUCGUCAAGGGAGACACGCGAG&CUCGCGUGUCCGCCUU-ACAUU	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN54328_c0_g1_603_TPlot.pdf
TRINITY_DN54339_c0_g1:2765	si_s775	TRINITY_DN54339_c0_g1	2754	2774	2765	-25.00	-16.40	0.656	7	2-8,2773-2767;11-19,2764-2756	1-1,2774-2774[UP5];9-10,2766-2765[SIL];20-21,2755-2754[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	CAUUUUAUAGCCUUAGUAAUG&AAUUACUAUUGCUAUAAAACA	2	0.982270976238932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN54339_c0_g1_2765_TPlot.pdf
TRINITY_DN54339_c0_g1:2766	si_s774	TRINITY_DN54339_c0_g1	2755	2775	2766	-24.70	-16.40	0.663967611336032	8	3-9,2773-2767;12-20,2764-2756	1-2,2775-2774[UP5];10-11,2766-2765[SIL];21-21,2755-2755[UP3]	.(((((((((..(((((((..&..)))))))..))))))))).	AUUUUAUAGCCUUAGUAAUGU&UAAUUACUAUUGCUAUAAAAC	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN54339_c0_g1_2766_TPlot.pdf
TRINITY_DN54339_c0_g1:2767	si_s773	TRINITY_DN54339_c0_g1	2756	2776	2767	-23.10	-16.40	0.70995670995671	9	4-10,2773-2767;13-21,2764-2756	1-3,2776-2774[UP5];11-12,2766-2765[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	UUUUAUAGCCUUAGUAAUGUA&UUAAUUACUAUUGCUAUAAAA	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN54339_c0_g1_2767_TPlot.pdf
TRINITY_DN54344_c0_g1:314	si_s43	TRINITY_DN54344_c0_g1	303	323	314	-25.50	-17.70	0.694117647058824	4	1-16,323-308;19-21,305-303	17-18,307-306[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	CUUAUAAUCUAAUUGUUAAAG&CUUUAAUAAUUGGAUUUCAAG	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN54344_c0_g1_314_TPlot.pdf
TRINITY_DN54344_c0_g1:315	si_s42	TRINITY_DN54344_c0_g1	304	324	315	-24.90	-17.50	0.70281124497992	5.5	1-17,324-308	18-21,307-304[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUAUAAUCUAAUUGUUAAAGA&UCUUUAAUAAUUGGAUUUCAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN54344_c0_g1_315_TPlot.pdf
TRINITY_DN54344_c0_g1:320	si_s37	TRINITY_DN54344_c0_g1	309	329	320	-24.40	-16.80	0.688524590163935	10	6-21,324-309	1-5,329-325[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUCUAAUUGUUAAAGAAGUAU&CUAAAUCUUUAAUAAUUGGAU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN54344_c0_g1_320_TPlot.pdf
TRINITY_DN54344_c0_g1:736	si_a73	TRINITY_DN54344_c0_g1	725	745	736	-21.90	-16.20	0.73972602739726	5	1-11,745-735;13-18,733-728	12-12,734-734[SIL];19-21,727-725[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AACAAUGAACAACAAUUUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN54344_c0_g1_736_TPlot.pdf
TRINITY_DN54344_c0_g1:738	si_a71	TRINITY_DN54344_c0_g1	727	747	738	-23.30	-16.40	0.703862660944206	5	3-13,745-735;15-20,733-728	1-2,747-746[UP5];14-14,734-734[SIL];21-21,727-727[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	CAAUGAACAACAAUUUGAAUA&CUUUCAAAUUGUUUUUCAUUA	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN54344_c0_g1_738_TPlot.pdf
TRINITY_DN54344_c0_g1:739	si_a70	TRINITY_DN54344_c0_g1	728	752	739	-23.90	-16.30	0.682008368200837	10	1-4,752-749;5-14,744-735;16-21,733-728	x-x,748-745[BULt];15-15,734-734[SIL]	((((((.((((((((((....((((&))))----)))))))))).))))))	AAUGAACAACAAUUUGAAUAUGAGA&UCUU----UCAAAUUGUUUUUCAUU	4	0.999999983799277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN54344_c0_g1_739_TPlot.pdf
TRINITY_DN54344_c0_g1:884	si_s70	TRINITY_DN54344_c0_g1	873	894	884	-25.80	-19.60	0.75968992248062	6.5	1-8,894-887;9-20,885-874	x-x,886-886[BULt];21-21,873-873[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	UGGAAGAAAAGAAUGUAGAGGU&ACUUCUAU-UUUUUUUCUUUCC	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN54344_c0_g1_884_TPlot.pdf
TRINITY_DN54348_c0_g1:116	si_a356	TRINITY_DN54348_c0_g1	103	125	116	-26.90	-19.10	0.71003717472119	14	4-12,122-114;13-20,111-104	1-3,125-123[UP5];x-x,113-112[BULt];21-21,103-103[UP3]	.((((((((..(((((((((...&...)))))))))--)))))))).	CUCCGAUCACGGGAUGGAGUCGG&UUAAUUCUAUUU--UGAUCGGAU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN54348_c0_g1_116_TPlot.pdf
TRINITY_DN54348_c0_g1:117	si_a355	TRINITY_DN54348_c0_g1	104	126	117	-26.80	-19.00	0.708955223880597	12.5	5-13,122-114;14-21,111-104	1-4,126-123[UP5];x-x,113-112[BULt]	((((((((..(((((((((....&....)))))))))--))))))))	UCCGAUCACGGGAUGGAGUCGGA&AUUAAUUCUAUUU--UGAUCGGA	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN54348_c0_g1_117_TPlot.pdf
TRINITY_DN54350_c0_g1:308	si_a425	TRINITY_DN54350_c0_g1	297	317	308	-30.80	-23.20	0.753246753246753	10.5	5-20,313-298	1-4,317-314[UP5];21-21,297-297[UP3]	.((((((((((((((((....&....)))))))))))))))).	UCGAUGGGUCCUAUGUUGCUG&AAUAAAUAUAGGAUCCGUUGG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN54350_c0_g1_308_TPlot.pdf
TRINITY_DN54350_c0_g1:310	si_a423	TRINITY_DN54350_c0_g1	299	319	310	-27.10	-20.40	0.752767527675277	13.5	7-21,313-299	1-6,319-314[UP5]	(((((((((((((((......&......)))))))))))))))	GAUGGGUCCUAUGUUGCUGCU&UAAAUAAAUAUAGGAUCCGUU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a423_TRINITY_DN54350_c0_g1_310_TPlot.pdf
TRINITY_DN54350_c0_g1:374	si_a9	TRINITY_DN54350_c0_g1	363	383	374	-29.60	-19.90	0.672297297297297	9	2-14,382-370	1-1,383-383[UP5];15-21,369-363[UP3]	.......(((((((((((((.&.))))))))))))).......	UAUUAACGGCUUUUUCUUCAC&UUGAAGAGAAAGCCUAUUUAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN54350_c0_g1_374_TPlot.pdf
TRINITY_DN54357_c0_g1:550	si_a232	TRINITY_DN54357_c0_g1	539	559	550	-28.20	-18.68	0.66241134751773	9.5	1-6,559-554;10-13,550-547;15-21,545-539	7-9,553-551[SIL];14-14,546-546[SIL]	(((((((.((((...((((((&))))))...)))).)))))))	GAUCGAGCUGAUGAAGGAAGC&GUUUCUAUAAUCAAUUCGAUC	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN54357_c0_g1_550_TPlot.pdf
TRINITY_DN54357_c0_g1:584	si_a629	TRINITY_DN54357_c0_g1	573	593	584	-26.30	-18.70	0.711026615969582	7.5	1-5,593-589;7-20,587-574	6-6,588-588[SIL];21-21,573-573[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	GAGGAAAGUUGACGUCAUGCG&CGUAUUAUGUCGAUUUUUUUG	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN54357_c0_g1_584_TPlot.pdf
TRINITY_DN54357_c0_g1:585	si_a628	TRINITY_DN54357_c0_g1	574	594	585	-27.10	-20.00	0.738007380073801	6.5	1-6,594-589;8-21,587-574	7-7,588-588[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	AGGAAAGUUGACGUCAUGCGU&GCGUAUUAUGUCGAUUUUUUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN54357_c0_g1_585_TPlot.pdf
TRINITY_DN54357_c0_g1:653	si_a498	TRINITY_DN54357_c0_g1	642	662	653	-33.50	-23.60	0.704477611940299	8.5	1-7,662-656;10-21,653-642	8-9,655-654[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	CGAGGAGGGUGAUCGAUGACA&UGUCGUUUUUCGUCUUCCUUG	4	0.999975336164604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN54357_c0_g1_653_TPlot.pdf
TRINITY_DN54357_c0_g1:654	si_a497	TRINITY_DN54357_c0_g1	643	663	654	-32.00	-21.20	0.6625	9	2-8,662-656;11-21,653-643	1-1,663-663[UP5];9-10,655-654[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	GAGGAGGGUGAUCGAUGACAA&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN54357_c0_g1_654_TPlot.pdf
TRINITY_DN54364_c0_g1:241	si_s72	TRINITY_DN54364_c0_g1	229	250	241	-24.10	-17.50	0.726141078838174	7	1-8,250-243;10-15,241-236;16-21,234-229	9-9,242-242[SIL];x-x,235-235[BULt]	((((((.((((((.((((((((&)))))))).))))))-))))))	GAGGAGAAGAAGGCAGAUAGAA&UUCUAUUUUUUUUCU-UUCCUU	4	0.999999999999088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN54364_c0_g1_241_TPlot.pdf
TRINITY_DN54364_c0_g1:76	si_s93	TRINITY_DN54364_c0_g1	66	86	76	-34.80	-22.70	0.652298850574713	5	2-9,85-78;10-15,76-71;17-20,70-67	1-1,86-86[UP5];x-x,77-77[BULt];16-16,x-x[BULq];21-21,66-66[UP3]	.((((-((((((.((((((((.&.))))))))-)))))).)))).	UAUCC-AAGCGAGAGAAGAAGC&UCUUCUUCU-UCGCUUCGGAUU	2	0.999999998684465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN54364_c0_g1_76_TPlot.pdf
TRINITY_DN54369_c0_g1:3580	si_a123	TRINITY_DN54369_c0_g1	3569	3589	3580	-26.60	-20.10	0.755639097744361	4.5	2-14,3588-3576;16-20,3574-3570	1-1,3589-3589[UP5];15-15,3575-3575[SIL];21-21,3569-3569[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	AUACUGGUGCUAUAAAACGAU&CUUGUUUUAUAGCAAUAGUAA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN54369_c0_g1_3580_TPlot.pdf
TRINITY_DN54369_c0_g1:3683	si_a406	TRINITY_DN54369_c0_g1	3671	3692	3683	-19.80	-13.70	0.691919191919192	6.5	1-15,3692-3678;16-19,3676-3673	x-x,3677-3677[BULt];20-21,3672-3671[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	AAUGAGUUGUAAAUAGAACAAU&AUUGUUUUGUUUAUA-UUUAAA	2	0.999999979663932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN54369_c0_g1_3683_TPlot.pdf
TRINITY_DN54370_c0_g1:1082	si_a16	TRINITY_DN54370_c0_g1	1071	1091	1082	-26.30	-17.10	0.650190114068441	13.5	5-18,1087-1074	1-4,1091-1088[UP5];19-21,1073-1071[UP3]	...((((((((((((((....&....))))))))))))))...	GGAGAAAAUGAGUGGGCAGCU&GAAAGCCUAUUUAUUUUUAGU	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN54370_c0_g1_1082_TPlot.pdf
TRINITY_DN54370_c0_g1:543	si_s79	TRINITY_DN54370_c0_g1	532	552	543	-26.20	-17.60	0.67175572519084	15	8-21,545-532	1-7,552-546[UP5]	((((((((((((((.......&.......))))))))))))))	AGGAAGAAGGGGAAACACAGC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN54370_c0_g1_543_TPlot.pdf
TRINITY_DN54371_c0_g1:163	si_a14	TRINITY_DN54371_c0_g1	152	172	163	-26.50	-18.40	0.694339622641509	9	1-13,172-160	14-21,159-152[UP3]	........(((((((((((((&)))))))))))))........	UAAUGUAUGAUAGGCUUUCUU&GAGAAAGCCUAUUUAUUUUUA	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a14_TRINITY_DN54371_c0_g1_163_TPlot.pdf
TRINITY_DN54371_c0_g1:206	si_a317	TRINITY_DN54371_c0_g1	195	215	206	-24.30	-16.90	0.695473251028807	7.5	1-3,215-213;5-18,211-198	4-4,212-212[SIL];19-21,197-195[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UUUAAAAGUUAUGGAUGCAUC&GAUUUAUCCAUGAUUUUUUUA	4	0.999985874321336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN54371_c0_g1_206_TPlot.pdf
TRINITY_DN54371_c0_g1:624	si_s39	TRINITY_DN54371_c0_g1	613	633	624	-22.30	-15.60	0.699551569506726	10.5	4-14,630-620;16-21,618-613	1-3,633-631[UP5];15-15,619-619[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AAAUCCUGUUGUUGAGGGCAA&AAAUCUUUAAUAAUUGGAUUU	2	0.969343840465523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN54371_c0_g1_624_TPlot.pdf
TRINITY_DN54378_c0_g1:1212	si_s724	TRINITY_DN54378_c0_g1	1200	1221	1212	-31.70	-21.30	0.67192429022082	8.5	4-16,1218-1206;17-21,1204-1200	1-3,1221-1219[UP5];x-x,1205-1205[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	ACUUGCUCUGGAUGAUAUCAGU&AAAGAUAUUAUCUAGA-CGGGU	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN54378_c0_g1_1212_TPlot.pdf
TRINITY_DN54378_c0_g1:985	si_a317	TRINITY_DN54378_c0_g1	974	994	985	-24.30	-19.20	0.790123456790123	5.5	2-17,993-978	1-1,994-994[UP5];18-21,977-974[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUUUAGAAUCAUGGAUAAAUG&GAUUUAUCCAUGAUUUUUUUA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN54378_c0_g1_985_TPlot.pdf
TRINITY_DN54378_c0_g1:989	si_a313	TRINITY_DN54378_c0_g1	978	998	989	-28.70	-19.20	0.668989547038327	9.5	6-21,993-978	1-5,998-994[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAUCAUGGAUAAAUGAGUU&CUUGGAUUUAUCCAUGAUUUU	4	0.999903674439181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN54378_c0_g1_989_TPlot.pdf
TRINITY_DN5437_c0_g1:525	si_a407	TRINITY_DN5437_c0_g1	514	534	525	-19.80	-13.00	0.656565656565657	11	2-5,533-530;7-17,528-518	1-1,534-534[UP5];6-6,529-529[SIL];18-21,517-514[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	UUAAAGAUGUAGACAUGGCAC&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5437_c0_g1_525_TPlot.pdf
TRINITY_DN5437_c0_g1:526	si_a406	TRINITY_DN5437_c0_g1	515	535	526	-19.80	-13.00	0.656565656565657	12	3-6,533-530;8-18,528-518	1-2,535-534[UP5];7-7,529-529[SIL];19-21,517-515[UP3]	...(((((((((((.((((..&..)))).)))))))))))...	UAAAGAUGUAGACAUGGCACA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5437_c0_g1_526_TPlot.pdf
TRINITY_DN5437_c0_g1:527	si_a405	TRINITY_DN5437_c0_g1	516	536	527	-19.80	-13.00	0.656565656565657	13	4-7,533-530;9-19,528-518	1-3,536-534[UP5];8-8,529-529[SIL];20-21,517-516[UP3]	..(((((((((((.((((...&...)))).)))))))))))..	AAAGAUGUAGACAUGGCACAA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5437_c0_g1_527_TPlot.pdf
TRINITY_DN5437_c0_g1:772	si_a871	TRINITY_DN5437_c0_g1	761	781	772	-26.40	-17.30	0.65530303030303	7.5	1-7,781-775;9-17,773-765	8-8,774-774[SIL];18-21,764-761[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AACAGCAGCUGAAGCUUUAAU&AUUAAAGAUUUAGUUGCAAUC	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN5437_c0_g1_772_TPlot.pdf
TRINITY_DN5437_c0_g1:773	si_a870	TRINITY_DN5437_c0_g1	762	782	773	-24.80	-17.30	0.69758064516129	7.5	2-8,781-775;10-18,773-765	1-1,782-782[UP5];9-9,774-774[SIL];19-21,764-762[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	ACAGCAGCUGAAGCUUUAAUU&UAUUAAAGAUUUAGUUGCAAU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN5437_c0_g1_773_TPlot.pdf
TRINITY_DN5437_c0_g1:774	si_a869	TRINITY_DN5437_c0_g1	763	783	774	-24.80	-17.30	0.69758064516129	8	3-9,781-775;11-19,773-765	1-2,783-782[UP5];10-10,774-774[SIL];20-21,764-763[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	CAGCAGCUGAAGCUUUAAUUU&UUAUUAAAGAUUUAGUUGCAA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN5437_c0_g1_774_TPlot.pdf
TRINITY_DN5437_c0_g1:775	si_a868	TRINITY_DN5437_c0_g1	764	784	775	-24.80	-17.30	0.69758064516129	9	4-10,781-775;12-20,773-765	1-3,784-782[UP5];11-11,774-774[SIL];21-21,764-764[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AGCAGCUGAAGCUUUAAUUUC&AUUAUUAAAGAUUUAGUUGCA	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN5437_c0_g1_775_TPlot.pdf
TRINITY_DN5437_c0_g1:776	si_a867	TRINITY_DN5437_c0_g1	765	785	776	-24.10	-16.80	0.697095435684647	10	5-11,781-775;13-21,773-765	1-4,785-782[UP5];12-12,774-774[SIL]	(((((((((.(((((((....&....))))))).)))))))))	GCAGCUGAAGCUUUAAUUUCC&AAUUAUUAAAGAUUUAGUUGC	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN5437_c0_g1_776_TPlot.pdf
TRINITY_DN54384_c0_g1:990	si_s72	TRINITY_DN54384_c0_g1	977	999	990	-24.10	-16.10	0.66804979253112	10	1-4,999-996;6-12,994-988;13-21,985-977	5-5,995-995[SIL];x-x,987-986[BULt]	(((((((((..(((((((.((((&)))).)))))))--)))))))))	GGGGAAAGACCGAAGAAGCAGAA&UUCUAUUUUUUU--UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN54384_c0_g1_990_TPlot.pdf
TRINITY_DN5438_c0_g1:2139	si_a870	TRINITY_DN5438_c0_g1	2126	2149	2139	-24.80	-16.60	0.669354838709677	8.5	1-7,2149-2143;8-10,2141-2139;11-20,2136-2127	x-x,2142-2142[BULt];x-x,2138-2137[BULt];21-21,2126-2126[UP3]	.((((((((((..(((.(((((((&)))))))-)))--)))))))))).	UUUGCAACUAAAAGUCAUUUAAUG&UAUUAAA-GAU--UUAGUUGCAAU	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN5438_c0_g1_2139_TPlot.pdf
TRINITY_DN5438_c0_g1:2276	si_a630	TRINITY_DN5438_c0_g1	2264	2286	2276	-25.80	-18.40	0.713178294573643	7	1-5,2286-2282;7-12,2279-2274;13-21,2272-2264	6-6,2281-2280[AILt];x-x,2273-2273[BULt]	(((((((((.((((((..(((((&)))))-.))))))-)))))))))	UCAAAAAAAUUCGACGGAAAUAC&GUAUU-AUGUCGA-UUUUUUUGA	2	0.941441084787653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN5438_c0_g1_2276_TPlot.pdf
TRINITY_DN5438_c0_g1:2461	si_s90	TRINITY_DN5438_c0_g1	2450	2470	2461	-35.30	-25.20	0.713881019830028	10.5	6-20,2465-2451	1-5,2470-2466[UP5];21-21,2450-2450[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GCGAGGCGAAGAAGAAAAUCA&CUUUCUUCUUCUUCGCUUCGG	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5438_c0_g1_2461_TPlot.pdf
TRINITY_DN5438_c0_g1:2462	si_s89	TRINITY_DN5438_c0_g1	2451	2471	2462	-35.30	-24.90	0.705382436260623	11.5	7-21,2465-2451	1-6,2471-2466[UP5]	(((((((((((((((......&......)))))))))))))))	CGAGGCGAAGAAGAAAAUCAA&CCUUUCUUCUUCUUCGCUUCG	2	0.999754944886661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5438_c0_g1_2462_TPlot.pdf
TRINITY_DN5438_c0_g1:2685	si_a441	TRINITY_DN5438_c0_g1	2674	2694	2685	-29.30	-21.30	0.726962457337884	6.5	1-4,2694-2691;6-10,2689-2685;12-20,2683-2675	5-5,2690-2690[SIL];11-11,2684-2684[SIL];21-21,2674-2674[UP3]	.(((((((((.(((((.((((&)))).))))).))))))))).	CACAAUUGUCCCAUGUGCAAC&GUUGGAUAUGAGAUAAUUGUU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN5438_c0_g1_2685_TPlot.pdf
TRINITY_DN5438_c0_g1:2686	si_a440	TRINITY_DN5438_c0_g1	2675	2695	2686	-30.80	-21.40	0.694805194805195	6.5	2-5,2694-2691;7-11,2689-2685;13-21,2683-2675	1-1,2695-2695[UP5];6-6,2690-2690[SIL];12-12,2684-2684[SIL]	(((((((((.(((((.((((.&.)))).))))).)))))))))	ACAAUUGUCCCAUGUGCAACA&CGUUGGAUAUGAGAUAAUUGU	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN5438_c0_g1_2686_TPlot.pdf
TRINITY_DN5438_c0_g1:378	si_a59	TRINITY_DN5438_c0_g1	367	388	378	-34.00	-23.50	0.691176470588235	10	1-4,388-385;6-19,382-369	5-5,384-383[AILt];20-21,368-367[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	GGUUGGGAGAGGCGGGCAUGAC&GUCG-ACUCGCUUCUUUCAAAU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN5438_c0_g1_378_TPlot.pdf
TRINITY_DN5438_c0_g1:702	si_s4	TRINITY_DN5438_c0_g1	692	711	702	-21.60	-14.10	0.652777777777778	10	4-10,708-702;12-20,701-693	1-3,711-709[UP5];11-11,x-x[BULq];21-21,692-692[UP3]	.(((((((((-(((((((...&...))))))).))))))))).	CAGUGAUGAU-AGUGAUAACG&UUAUAUUACUUAUUAUUACUA	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN5438_c0_g1_702_TPlot.pdf
TRINITY_DN5438_c0_g1:703	si_s3	TRINITY_DN5438_c0_g1	693	712	703	-21.20	-13.90	0.655660377358491	11	5-11,708-702;13-21,701-693	1-4,712-709[UP5];12-12,x-x[BULq]	(((((((((-(((((((....&....))))))).)))))))))	AGUGAUGAU-AGUGAUAACGA&UUUAUAUUACUUAUUAUUACU	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN5438_c0_g1_703_TPlot.pdf
TRINITY_DN54397_c0_g1:2204	si_a153	TRINITY_DN54397_c0_g1	2194	2213	2204	-28.70	-22.30	0.777003484320558	5.5	1-14,2213-2200;17-21,2198-2194	15-16,2199-2199[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	GUAGAG-GACUUUGAAGCAAC&GUUGUUUUAAGGUCAAUCUAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN54397_c0_g1_2204_TPlot.pdf
TRINITY_DN543_c0_g1:2415	si_a786	TRINITY_DN543_c0_g1	2403	2424	2415	-26.60	-17.30	0.650375939849624	5.5	1-6,2424-2419;8-15,2417-2410;16-20,2408-2404	7-7,2418-2418[SIL];x-x,2409-2409[BULt];21-21,2403-2403[UP3]	.(((((.((((((((.((((((&)))))).))))))))-))))).	CGAGAAUUAGAAGAAAAGAAGA&UCUUCUAUUUUUCUA-UUUUCC	2	0.999999999982263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN543_c0_g1_2415_TPlot.pdf
TRINITY_DN543_c0_g1:4203	si_a147	TRINITY_DN543_c0_g1	4192	4211	4203	-30.40	-20.60	0.677631578947368	5	1-6,4211-4206;8-19,4205-4194	7-7,x-x[BULq];20-21,4193-4192[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	UAGCCUUGAAACAA-AACGAU&AUCGUUGUUGUUUUAAGGUCA	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN543_c0_g1_4203_TPlot.pdf
TRINITY_DN543_c0_g1:5421	si_s93	TRINITY_DN543_c0_g1	5409	5430	5421	-34.80	-22.80	0.655172413793104	10.5	2-12,5429-5419;13-18,5417-5412	1-1,5430-5430[UP5];x-x,5418-5418[BULt];19-21,5411-5409[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	UUACCGGAGUUGGAGAAGGGGU&UCUUCUUCUUCG-CUUCGGAUU	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN543_c0_g1_5421_TPlot.pdf
TRINITY_DN543_c0_g1:7959	si_s73	TRINITY_DN543_c0_g1	7947	7969	7959	-24.00	-16.30	0.679166666666667	9	1-4,7969-7966;6-16,7963-7953;17-21,7951-7947	5-5,7965-7964[AILt];x-x,7952-7952[BULt]	(((((.(((((((((((..((((&))))-.)))))))))))-)))))	GAGGGCAAAGAAGAAGACUUGGA&UCUA-UUUUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN543_c0_g1_7959_TPlot.pdf
TRINITY_DN543_c0_g1:8011	si_a874	TRINITY_DN543_c0_g1	8000	8020	8011	-26.70	-17.60	0.659176029962547	11	4-11,8017-8010;14-20,8007-8001	1-3,8020-8018[UP5];12-13,8009-8008[SIL];21-21,8000-8000[UP3]	.(((((((..((((((((...&...))))))))..))))))).	UUUGAUUGAUGCUAAGUCGUC&AAAGAUUUAGUUGCAAUCAAU	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN543_c0_g1_8011_TPlot.pdf
TRINITY_DN54411_c0_g1:983	si_s10	TRINITY_DN54411_c0_g1	973	992	983	-23.80	-16.50	0.69327731092437	8.5	3-15,990-978;17-20,977-974	1-2,992-991[UP5];16-16,x-x[BULq];21-21,973-973[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	CCAGU-UAGUGAUGAUGAGAG&UACUUAUUAUUACUAUAUUGA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN54411_c0_g1_983_TPlot.pdf
TRINITY_DN54411_c0_g1:984	si_s9	TRINITY_DN54411_c0_g1	974	993	984	-22.90	-15.70	0.685589519650655	9.5	4-16,990-978;18-21,977-974	1-3,993-991[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	CAGU-UAGUGAUGAUGAGAGA&UUACUUAUUAUUACUAUAUUG	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN54411_c0_g1_984_TPlot.pdf
TRINITY_DN5441_c0_g1:358	si_a789	TRINITY_DN5441_c0_g1	347	367	358	-24.80	-16.16	0.651612903225806	13	1-5,367-363;10-19,358-349	6-9,362-359[SIL];20-21,348-347[UP3]	..((((((((((....(((((&)))))....))))))))))..	AAUGGAAAAUGGUCAUGUGGA&UCUAUUUUUCUAUUUUCCAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN5441_c0_g1_358_TPlot.pdf
TRINITY_DN54422_c0_g1:116	si_s149	TRINITY_DN54422_c0_g1	102	125	116	-37.20	-26.00	0.698924731182796	9.5	4-10,122-116;11-13,114-112;14-21,109-102	1-3,125-123[UP5];x-x,115-115[BULt];x-x,111-110[BULt]	((((((((..(((.(((((((...&...)))))))-)))--))))))))	CCAUGGACGUCUCACUUUGGGGGC&AAACCCAAAG-GAG--GUUCAUGG	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s149_TRINITY_DN54422_c0_g1_116_TPlot.pdf
TRINITY_DN54422_c0_g1:2096	si_s806	TRINITY_DN54422_c0_g1	2085	2105	2096	-28.60	-21.70	0.758741258741259	13	5-20,2101-2086	1-4,2105-2102[UP5];21-21,2085-2085[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGAGGGGGUGGCGGAGUGCA&UUAUCUUCGUUACCUUUUCUU	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN54422_c0_g1_2096_TPlot.pdf
TRINITY_DN54426_c0_g1:831	si_a321	TRINITY_DN54426_c0_g1	820	840	831	-26.70	-18.10	0.677902621722847	5	2-10,839-831;12-20,829-821	1-1,840-840[UP5];11-11,830-830[SIL];21-21,820-820[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AGAAUAAAAAUAUUAUGGAUC&UAUCCAUGAUUUUUUUAUUCC	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN54426_c0_g1_831_TPlot.pdf
TRINITY_DN5442_c0_g1:202	si_s661	TRINITY_DN5442_c0_g1	191	212	202	-35.40	-24.60	0.694915254237288	8	2-5,211-208;6-16,206-196	1-1,212-212[UP5];x-x,207-207[BULt];17-21,195-191[UP3]	.....(((((((((((.((((.&.))))-))))))))))).....	ACCUAAAUUCGAUCCCACCGAA&AUCGG-GGGAUCGAAUUGAUUA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN5442_c0_g1_202_TPlot.pdf
TRINITY_DN5442_c0_g1:206	si_s657	TRINITY_DN5442_c0_g1	195	215	206	-36.70	-25.10	0.683923705722071	7	1-3,215-213;6-9,211-208;10-20,206-196	4-5,212-212[AILq];x-x,207-207[BULt];21-21,195-195[UP3]	.(((((((((((.((((.-(((&)))..))))-))))))))))).	AAAUUCGAUCCCACCGAA-GUA&UACAAUCGG-GGGAUCGAAUUG	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s657_TRINITY_DN5442_c0_g1_206_TPlot.pdf
TRINITY_DN5442_c0_g1:891	si_a763	TRINITY_DN5442_c0_g1	880	900	891	-28.80	-19.30	0.670138888888889	8.5	1-5,900-896;8-21,893-880	6-7,895-894[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	UGGAUCAAUUGAAGUACCAGA&UUUGGGUUUUUGAUUGAUUCA	3	0.999999980910168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN5442_c0_g1_891_TPlot.pdf
TRINITY_DN54431_c0_g1:212	si_a60	TRINITY_DN54431_c0_g1	201	221	212	-32.20	-21.80	0.677018633540373	8.5	1-5,221-217;8-17,214-205	6-7,216-215[SIL];18-21,204-201[UP3]	....((((((((((..(((((&)))))..))))))))))....	GCGAUGGAAGAAGCAUGUCGA&UCGACUCGCUUCUUUCAAAUU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN54431_c0_g1_212_TPlot.pdf
TRINITY_DN54447_c0_g1:708	si_a137	TRINITY_DN54447_c0_g1	696	717	708	-26.50	-18.00	0.679245283018868	7.5	1-7,717-711;9-10,709-708;11-21,706-696	8-8,710-710[SIL];x-x,707-707[BULt]	(((((((((((.((.(((((((&))))))).))-)))))))))))	ACAGCAACGAUAUGUUUAUUGU&AUAGUAAUUA-AUCGUUGUUGU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN54447_c0_g1_708_TPlot.pdf
TRINITY_DN54449_c0_g1:1268	si_s82	TRINITY_DN54449_c0_g1	1257	1277	1268	-28.90	-19.10	0.660899653979239	7.5	2-5,1276-1273;7-17,1271-1261	1-1,1277-1277[UP5];6-6,1272-1272[SIL];18-21,1260-1257[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	UAAUGGAAGAAAGGACAGAAC&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN54449_c0_g1_1268_TPlot.pdf
TRINITY_DN54449_c0_g1:1271	si_s79	TRINITY_DN54449_c0_g1	1260	1280	1271	-26.20	-19.10	0.729007633587786	10.5	5-8,1276-1273;10-20,1271-1261	1-4,1280-1277[UP5];9-9,1272-1272[SIL];21-21,1260-1260[UP3]	.(((((((((((.((((....&....)))).))))))))))).	UGGAAGAAAGGACAGAACGCA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN54449_c0_g1_1271_TPlot.pdf
TRINITY_DN54449_c0_g1:1273	si_s77	TRINITY_DN54449_c0_g1	1262	1285	1273	-25.50	-18.30	0.717647058823529	9	1-6,1285-1280;7-10,1276-1273;12-21,1271-1262	x-x,1279-1277[BULt];11-11,1272-1272[SIL]	((((((((((.((((...((((((&))))))---)))).))))))))))	GAAGAAAGGACAGAACGCAAGAAA&UUUUUU---UUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN54449_c0_g1_1273_TPlot.pdf
TRINITY_DN54449_c0_g1:1274	si_s76	TRINITY_DN54449_c0_g1	1263	1286	1274	-23.60	-16.40	0.694915254237288	9	1-7,1286-1280;8-11,1276-1273;13-21,1271-1263	x-x,1279-1277[BULt];12-12,1272-1272[SIL]	(((((((((.((((...(((((((&)))))))---)))).)))))))))	AAGAAAGGACAGAACGCAAGAAAU&AUUUUUU---UUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN54449_c0_g1_1274_TPlot.pdf
TRINITY_DN54449_c0_g1:1433	si_s164	TRINITY_DN54449_c0_g1	1422	1442	1433	-40.20	-27.80	0.691542288557214	6	2-12,1441-1431;14-20,1429-1423	1-1,1442-1442[UP5];13-13,1430-1430[SIL];21-21,1422-1422[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	AAUCUUUAGUCUUGGCCGUGU&UCAUGGCCAGGGGUAAAGAUG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN54449_c0_g1_1433_TPlot.pdf
TRINITY_DN54449_c0_g1:1434	si_s163	TRINITY_DN54449_c0_g1	1423	1443	1434	-38.60	-27.40	0.709844559585492	6.5	3-13,1441-1431;15-21,1429-1423	1-2,1443-1442[UP5];14-14,1430-1430[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AUCUUUAGUCUUGGCCGUGUC&UUCAUGGCCAGGGGUAAAGAU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s163_TRINITY_DN54449_c0_g1_1434_TPlot.pdf
TRINITY_DN54449_c0_g1:786	si_s519	TRINITY_DN54449_c0_g1	775	800	786	-24.40	-17.00	0.69672131147541	12	2-7,799-794;8-20,788-776	1-1,800-800[UP5];x-x,793-789[BULt];21-21,775-775[UP3]	.(((((((((((((.....((((((.&.))))))-----))))))))))))).	CAUGAUUUCGAAUUUAGUAAAGAAUU&UAUUCUU-----AAUUCGAAAUCAUU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN54449_c0_g1_786_TPlot.pdf
TRINITY_DN54449_c0_g1:787	si_s518	TRINITY_DN54449_c0_g1	776	801	787	-24.60	-17.00	0.691056910569106	13	3-8,799-794;9-21,788-776	1-2,801-800[UP5];x-x,793-789[BULt]	(((((((((((((.....((((((..&..))))))-----)))))))))))))	AUGAUUUCGAAUUUAGUAAAGAAUUU&AUAUUCUU-----AAUUCGAAAUCAU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN54449_c0_g1_787_TPlot.pdf
TRINITY_DN5444_c0_g1:1026	si_a408	TRINITY_DN5444_c0_g1	1015	1035	1026	-20.10	-14.50	0.721393034825871	8.5	2-5,1034-1031;7-19,1029-1017	1-1,1035-1035[UP5];6-6,1030-1030[SIL];20-21,1016-1015[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UCUUUGAAUAUGAGCCGAACU&UGUUUUGUUUAUAUUUAAAUA	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5444_c0_g1_1026_TPlot.pdf
TRINITY_DN5444_c0_g1:1557	si_s795	TRINITY_DN5444_c0_g1	1545	1567	1557	-30.30	-19.90	0.656765676567657	12.5	3-8,1565-1560;10-15,1557-1552;16-21,1550-1545	1-2,1567-1566[UP5];9-9,1559-1558[AILt];x-x,1551-1551[BULt]	((((((.((((((..((((((..&..))))))-.))))))-))))))	GCGGAGUAUGGGACGGCGAGCCG&AAGCUCGU-AUUUUAU-CUUCGU	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN5444_c0_g1_1557_TPlot.pdf
TRINITY_DN5444_c0_g1:500	si_a185	TRINITY_DN5444_c0_g1	489	509	500	-31.70	-22.28	0.702839116719243	11.5	1-4,509-506;8-19,502-491	5-7,505-503[SIL];20-21,490-489[UP3]	..((((((((((((...((((&))))...))))))))))))..	AUGACAGGGGGAGAGCGUGUC&GAUAAUAUCUUUCCCUGUUCA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN5444_c0_g1_500_TPlot.pdf
TRINITY_DN5444_c0_g1:501	si_a184	TRINITY_DN5444_c0_g1	490	510	501	-31.70	-22.38	0.705993690851735	11	2-5,509-506;9-20,502-491	1-1,510-510[UP5];6-8,505-503[SIL];21-21,490-490[UP3]	.((((((((((((...((((.&.))))...)))))))))))).	UGACAGGGGGAGAGCGUGUCA&AGAUAAUAUCUUUCCCUGUUC	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN5444_c0_g1_501_TPlot.pdf
TRINITY_DN5444_c0_g1:593	si_a319	TRINITY_DN5444_c0_g1	582	602	593	-22.40	-14.60	0.651785714285714	14	6-18,597-585	1-5,602-598[UP5];19-21,584-582[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCAGAGAAGUCAUGGUCGAU&UUUAUCCAUGAUUUUUUUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5444_c0_g1_593_TPlot.pdf
TRINITY_DN5444_c0_g1:696	si_a324	TRINITY_DN5444_c0_g1	685	705	696	-27.50	-20.40	0.741818181818182	7	1-14,705-692;16-18,690-688	15-15,691-691[SIL];19-21,687-685[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	AAUGGGUUGAAAAGAUCGUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN5444_c0_g1_696_TPlot.pdf
TRINITY_DN5444_c0_g1:702	si_a318	TRINITY_DN5444_c0_g1	691	711	702	-22.50	-17.50	0.777777777777778	12	6-20,706-692	1-5,711-707[UP5];21-21,691-691[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUGAAAAGAUCGUGGAAGUUC&AUUUAUCCAUGAUUUUUUUAU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5444_c0_g1_702_TPlot.pdf
TRINITY_DN5444_c0_g1:703	si_a317	TRINITY_DN5444_c0_g1	692	712	703	-24.30	-17.40	0.716049382716049	13	7-21,706-692	1-6,712-707[UP5]	(((((((((((((((......&......)))))))))))))))	UGAAAAGAUCGUGGAAGUUCC&GAUUUAUCCAUGAUUUUUUUA	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN5444_c0_g1_703_TPlot.pdf
TRINITY_DN5444_c0_g1:704	si_a316	TRINITY_DN5444_c0_g1	693	712	704	-26.30	-18.90	0.718631178707224	7	1-3,712-710;5-6,708-707;8-21,706-693	4-4,709-709[SIL];7-7,x-x[BULq]	((((((((((((((-((.(((&))).)).))))))))))))))	GAAAAGAUCGUGGA-AGUUCC&GGAUUUAUCCAUGAUUUUUUU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN5444_c0_g1_704_TPlot.pdf
TRINITY_DN54470_c0_g1:354	si_a234	TRINITY_DN54470_c0_g1	343	363	354	-31.30	-21.30	0.680511182108626	7.5	2-12,362-352;15-15,349-349;17-21,347-343	1-1,363-363[UP5];13-14,351-350[SIL];16-16,348-348[SIL]	(((((.(..(((((((((((.&.)))))))))))..).)))))	GGGGUGGCUUUGAUUGUGGGU&UUCUAUAAUCAAUUCGAUCCC	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a234_TRINITY_DN54470_c0_g1_354_TPlot.pdf
TRINITY_DN54470_c0_g1:407	si_s796	TRINITY_DN54470_c0_g1	396	415	407	-30.30	-20.10	0.663366336633663	10.5	2-9,414-407;12-21,405-396	1-1,415-415[UP5];10-11,406-406[AILq]	((((((((((.-((((((((.&.))))))))..))))))))))	AACGGGGGUGU-AUGCGGGUA&AGCUCGUAUUUUAUCUUCGUU	2	0.999639564237272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN54470_c0_g1_407_TPlot.pdf
TRINITY_DN54472_c0_g1:95	si_s31	TRINITY_DN54472_c0_g1	84	104	95	-24.80	-16.60	0.669354838709677	9	3-4,102-101;7-20,98-85	1-2,104-103[UP5];5-6,100-99[SIL];21-21,84-84[UP3]	.((((((((((((((..((..&..))..)))))))))))))).	GUAUUAAAGAUUUAGCGGUUU&UUGCAACUAAAUCUUUAAUAA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN54472_c0_g1_95_TPlot.pdf
TRINITY_DN54478_c0_g1:1584	si_s620	TRINITY_DN54478_c0_g1	1570	1593	1584	-32.10	-21.20	0.660436137071651	10.5	3-10,1591-1584;11-13,1581-1579;14-21,1577-1570	1-2,1593-1592[UP5];x-x,1583-1582[BULt];x-x,1578-1578[BULt]	((((((((.(((..((((((((..&..))))))))--)))-))))))))	ACGAGGAGUGUCAAGCUUGGGUCC&AAAUCCAAGC--GAU-CUUUUCGU	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s620_TRINITY_DN54478_c0_g1_1584_TPlot.pdf
TRINITY_DN54478_c0_g1:1775	si_a675	TRINITY_DN54478_c0_g1	1764	1787	1775	-34.00	-22.12	0.650588235294118	15	1-7,1787-1781;10-17,1775-1768;19-21,1766-1764	8-9,1780-1776[AILt];18-18,1767-1767[SIL]	(((.((((((((.....(((((((&)))))))---..)))))))).)))	AGAGUGCGUGAGAUUUUGGGAGUC&GAUUCCU---UAUUCACGCGGUUU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN54478_c0_g1_1775_TPlot.pdf
TRINITY_DN54478_c0_g1:1782	si_a671	TRINITY_DN54478_c0_g1	1768	1791	1782	-32.10	-21.32	0.66417445482866	15	3-11,1789-1781;14-21,1775-1768	1-2,1791-1790[UP5];12-13,1780-1776[AILt]	((((((((.....(((((((((..&..)))))))))---..))))))))	UGCGUGAGAUUUUGGGAGUCAAGA&UAUUGAUUCCU---UAUUCACGCG	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a671_TRINITY_DN54478_c0_g1_1782_TPlot.pdf
TRINITY_DN54478_c0_g1:1910	si_a66	TRINITY_DN54478_c0_g1	1894	1919	1910	-26.70	-17.78	0.665917602996255	18	1-10,1919-1910;14-21,1901-1894	11-13,1909-1902[AILt]	((((((((........((((((((((&))))))))))-----...))))))))	AGAAACGAGCCGAGAAGGAAGAGGCG&CGCUUCUUUC-----AAAUUGUUUUU	4	0.999999999999592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN54478_c0_g1_1910_TPlot.pdf
TRINITY_DN54478_c0_g1:345	si_a259	TRINITY_DN54478_c0_g1	335	354	345	-39.20	-28.00	0.714285714285714	9	3-14,352-341;17-20,339-336	1-2,354-353[UP5];15-16,340-340[AILq];21-21,335-335[UP3]	.((((.-((((((((((((..&..))))))))))))..)))).	CGGCGG-UGCCUUCGGUGCCG&UUGUAUCGAGGGCAAACGCCU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN54478_c0_g1_345_TPlot.pdf
TRINITY_DN54478_c0_g1:346	si_a258	TRINITY_DN54478_c0_g1	336	355	346	-38.60	-27.70	0.717616580310881	10	4-15,352-341;18-21,339-336	1-3,355-353[UP5];16-17,340-340[AILq]	((((.-((((((((((((...&...))))))))))))..))))	GGCGG-UGCCUUCGGUGCCGU&AUUGUAUCGAGGGCAAACGCC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN54478_c0_g1_346_TPlot.pdf
TRINITY_DN5447_c0_g2:6155	si_a558	TRINITY_DN5447_c0_g2	6144	6165	6155	-35.40	-24.10	0.680790960451978	11	1-7,6165-6159;9-17,6156-6148	8-8,6158-6157[AILt];18-21,6147-6144[UP3]	....(((((((((..(((((((&)))))))-.)))))))))....	ACUCCACGGGGAGCUUGGAGGA&UUCUUUA-UCUCCCCGUGAAUC	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN5447_c0_g2_6155_TPlot.pdf
TRINITY_DN54480_c0_g1:1003	si_a761	TRINITY_DN54480_c0_g1	992	1013	1003	-30.10	-20.30	0.674418604651163	8.5	1-2,1013-1012;3-16,1010-997	x-x,1011-1011[BULt];17-21,996-992[UP3]	.....((((((((((((((.((&))-)))))))))))))).....	AUUUUGUCAAAAACCCAGACGG&CC-UUUGGGUUUUUGAUUGAUU	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN54480_c0_g1_1003_TPlot.pdf
TRINITY_DN54480_c0_g1:1005	si_a759	TRINITY_DN54480_c0_g1	994	1016	1005	-32.60	-21.20	0.650306748466258	8.5	1-2,1016-1015;3-4,1013-1012;5-18,1010-997	x-x,1014-1014[BULt];x-x,1011-1011[BULt];19-21,996-994[UP3]	...((((((((((((((.((.((&))-))-))))))))))))))...	UUUGUCAAAAACCCAGACGGCAG&CU-CC-UUUGGGUUUUUGAUUGA	4	0.999999998959582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN54480_c0_g1_1005_TPlot.pdf
TRINITY_DN54480_c0_g1:1339	si_s598	TRINITY_DN54480_c0_g1	1328	1349	1339	-28.20	-18.70	0.663120567375887	12	5-8,1345-1342;9-19,1340-1330	1-4,1349-1346[UP5];x-x,1341-1341[BULt];20-21,1329-1328[UP3]	..(((((((((((.((((....&....))))-)))))))))))..	ACAAAGAUUCGCUAUGGGGCAG&UAAAUCCA-AGCGAAUCUUUUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN54480_c0_g1_1339_TPlot.pdf
TRINITY_DN54480_c0_g1:1539	si_a309	TRINITY_DN54480_c0_g1	1528	1548	1539	-33.60	-24.28	0.722619047619048	7	2-11,1547-1538;15-20,1534-1529	1-1,1548-1548[UP5];12-14,1537-1535[SIL];21-21,1528-1528[UP3]	.((((((...((((((((((.&.))))))))))...)))))).	CCGUGGGACUAUCCAAGCGAC&UUCGCUUGGAUUUAUCCAUGA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN54480_c0_g1_1539_TPlot.pdf
TRINITY_DN54480_c0_g1:1541	si_a307	TRINITY_DN54480_c0_g1	1530	1550	1541	-33.00	-21.48	0.650909090909091	9	4-13,1547-1538;17-21,1534-1530	1-3,1550-1548[UP5];14-16,1537-1535[SIL]	(((((...((((((((((...&...))))))))))...)))))	GUGGGACUAUCCAAGCGACAA&GAUUCGCUUGGAUUUAUCCAU	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN54480_c0_g1_1541_TPlot.pdf
TRINITY_DN5448_c0_g1:298	si_a408	TRINITY_DN5448_c0_g1	287	307	298	-20.10	-13.10	0.651741293532338	10	1-13,307-295	14-21,294-287[UP3]	........(((((((((((((&)))))))))))))........	GAAGAUUUUAUGAACGAAACA&UGUUUUGUUUAUAUUUAAAUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5448_c0_g1_298_TPlot.pdf
TRINITY_DN5448_c0_g1:303	si_a403	TRINITY_DN5448_c0_g1	292	314	303	-22.00	-15.20	0.690909090909091	10.5	2-5,313-310;6-18,307-295	1-1,314-314[UP5];x-x,309-308[BULt];19-21,294-292[UP3]	...(((((((((((((..((((.&.))))--)))))))))))))...	UUUUAUGAACGAAACAGAGUUCA&AGAAU--UGUUUUGUUUAUAUUU	3	0.999999950567046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5448_c0_g1_303_TPlot.pdf
TRINITY_DN5448_c0_g1:304	si_a402	TRINITY_DN5448_c0_g1	293	315	304	-22.40	-15.20	0.678571428571429	11.5	3-6,313-310;7-19,307-295	1-2,315-314[UP5];x-x,309-308[BULt];20-21,294-293[UP3]	..(((((((((((((..((((..&..))))--)))))))))))))..	UUUAUGAACGAAACAGAGUUCAA&UAGAAU--UGUUUUGUUUAUAUU	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5448_c0_g1_304_TPlot.pdf
TRINITY_DN5448_c0_g1:720	si_a804	TRINITY_DN5448_c0_g1	709	729	720	-37.20	-24.50	0.658602150537634	7	2-13,728-717;15-17,715-713	1-1,729-729[UP5];14-14,716-716[SIL];18-21,712-709[UP3]	....(((.((((((((((((.&.)))))))))))).)))....	UUUGCUUGGCUUUGGAUUGGU&UCCAAUCCGAAGCGAAGAAGA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a804_TRINITY_DN5448_c0_g1_720_TPlot.pdf
TRINITY_DN5448_c0_g1:721	si_a803	TRINITY_DN5448_c0_g1	710	730	721	-36.30	-24.50	0.674931129476584	8	3-14,728-717;16-18,715-713	1-2,730-729[UP5];15-15,716-716[SIL];19-21,712-710[UP3]	...(((.((((((((((((..&..)))))))))))).)))...	UUGCUUGGCUUUGGAUUGGUU&UUCCAAUCCGAAGCGAAGAAG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a803_TRINITY_DN5448_c0_g1_721_TPlot.pdf
TRINITY_DN5448_c0_g1:722	si_a802	TRINITY_DN5448_c0_g1	711	731	722	-34.70	-24.50	0.706051873198847	9	4-15,728-717;17-19,715-713	1-3,731-729[UP5];16-16,716-716[SIL];20-21,712-711[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	UGCUUGGCUUUGGAUUGGUUC&UUUCCAAUCCGAAGCGAAGAA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN5448_c0_g1_722_TPlot.pdf
TRINITY_DN5448_c0_g1:725	si_a799	TRINITY_DN5448_c0_g1	714	734	725	-32.50	-21.30	0.655384615384615	12.5	7-18,728-717;20-21,715-714	1-6,734-729[UP5];19-19,716-716[SIL]	((.((((((((((((......&......)))))))))))).))	UUGGCUUUGGAUUGGUUCAUG&UAUUUUCCAAUCCGAAGCGAA	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN5448_c0_g1_725_TPlot.pdf
TRINITY_DN54499_c0_g1:667	si_a410	TRINITY_DN54499_c0_g1	656	676	667	-17.80	-12.70	0.713483146067416	8.5	1-16,676-661	17-21,660-656[UP3]	.....((((((((((((((((&)))))))))))))))).....	UACUCUUAGAUAUAGAUAAGA&UUUUGUUUAUAUUUAAAUAAA	4	0.999992998292024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN54499_c0_g1_667_TPlot.pdf
TRINITY_DN544_c0_g1:1380	si_s489	TRINITY_DN544_c0_g1	1369	1389	1380	-17.90	-13.10	0.731843575418994	6	2-12,1388-1378;14-20,1376-1370	1-1,1389-1389[UP5];13-13,1377-1377[SIL];21-21,1369-1369[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	AUUGUUUAGGUUUGGAUAAAG&AUUUAUUUAAAUAUAAACAAA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN544_c0_g1_1380_TPlot.pdf
TRINITY_DN544_c0_g1:2003	si_a467	TRINITY_DN544_c0_g1	1991	2013	2003	-21.10	-14.70	0.696682464454976	3	1-7,2013-2007;8-18,2005-1995;19-21,1993-1991	x-x,2006-2006[BULt];x-x,1994-1994[BULt]	(((.(((((((((((.(((((((&)))))))-)))))))))))-)))	AACUAAUAAUUACAUAAUUAUAU&AUAUAAU-AUGUAAUUAUU-GUU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN544_c0_g1_2003_TPlot.pdf
TRINITY_DN544_c0_g1:2004	si_a466	TRINITY_DN544_c0_g1	1993	2014	2004	-21.50	-14.40	0.669767441860465	4.5	2-8,2013-2007;9-20,2005-1994	1-1,2014-2014[UP5];x-x,2006-2006[BULt];21-21,1993-1993[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	CUAAUAAUUACAUAAUUAUAUU&UAUAUAAU-AUGUAAUUAUUGU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN544_c0_g1_2004_TPlot.pdf
TRINITY_DN544_c0_g1:2007	si_a464	TRINITY_DN544_c0_g1	1995	2016	2007	-19.60	-13.10	0.668367346938775	7	4-10,2013-2007;11-21,2005-1995	1-3,2016-2014[UP5];x-x,2006-2006[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AAUAAUUACAUAAUUAUAUUUU&UAUAUAUAAU-AUGUAAUUAUU	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN544_c0_g1_2007_TPlot.pdf
TRINITY_DN544_c0_g1:320	si_a771	TRINITY_DN544_c0_g1	308	329	320	-29.40	-19.20	0.653061224489796	7.5	1-12,329-318;15-20,314-309	13-14,317-315[AILt];21-21,308-308[UP3]	.((((((...((((((((((((&))))))))))))-..)))))).	UGGAGAGACGGGAUCAAUUAAA&UUUGAUUGAUUC-AACUCUUCU	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN544_c0_g1_320_TPlot.pdf
TRINITY_DN544_c0_g1:321	si_a770	TRINITY_DN544_c0_g1	309	330	321	-28.70	-19.20	0.668989547038327	6	1-13,330-318;16-21,314-309	14-15,317-315[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	GGAGAGACGGGAUCAAUUAAAG&UUUUGAUUGAUUC-AACUCUUC	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN544_c0_g1_321_TPlot.pdf
TRINITY_DN544_c0_g1:322	si_a769	TRINITY_DN544_c0_g1	310	331	322	-26.70	-17.50	0.655430711610487	7	2-14,330-318;17-21,314-310	1-1,331-331[UP5];15-16,317-315[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	GAGAGACGGGAUCAAUUAAAGG&UUUUUGAUUGAUUC-AACUCUU	2	0.997836334218218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN544_c0_g1_322_TPlot.pdf
TRINITY_DN544_c0_g1:446	si_s808	TRINITY_DN544_c0_g1	434	455	446	-28.60	-19.50	0.681818181818182	9	1-15,455-441;16-17,439-438	x-x,440-440[BULt];18-21,437-434[UP3]	....((.(((((((((((((((&)))))))))))))))-))....	AAAUGAUGGAGGUGAUGGAGAU&AUCUUCGUUACCUUU-UCUUAA	4	0.999999869687671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN544_c0_g1_446_TPlot.pdf
TRINITY_DN544_c0_g1:447	si_s807	TRINITY_DN544_c0_g1	435	456	447	-28.90	-20.00	0.69204152249135	8.5	1-16,456-441;17-18,439-438	x-x,440-440[BULt];19-21,437-435[UP3]	...((.((((((((((((((((&))))))))))))))))-))...	AAUGAUGGAGGUGAUGGAGAUG&UAUCUUCGUUACCUUU-UCUUA	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN544_c0_g1_447_TPlot.pdf
TRINITY_DN544_c0_g1:448	si_s806	TRINITY_DN544_c0_g1	436	457	448	-28.60	-21.80	0.762237762237762	8	1-17,457-441;18-19,439-438	x-x,440-440[BULt];20-21,437-436[UP3]	..((.(((((((((((((((((&)))))))))))))))))-))..	AUGAUGGAGGUGAUGGAGAUGA&UUAUCUUCGUUACCUUU-UCUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN544_c0_g1_448_TPlot.pdf
TRINITY_DN544_c0_g1:449	si_s805	TRINITY_DN544_c0_g1	437	458	449	-28.60	-22.50	0.786713286713287	7	1-18,458-441;19-20,439-438	x-x,440-440[BULt];21-21,437-437[UP3]	.((.((((((((((((((((((&))))))))))))))))))-)).	UGAUGGAGGUGAUGGAGAUGAA&UUUAUCUUCGUUACCUUU-UCU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN544_c0_g1_449_TPlot.pdf
TRINITY_DN544_c0_g1:450	si_s804	TRINITY_DN544_c0_g1	438	459	450	-27.90	-22.30	0.799283154121864	6.5	2-19,458-441;20-21,439-438	1-1,459-459[UP5];x-x,440-440[BULt]	((.((((((((((((((((((.&.))))))))))))))))))-))	GAUGGAGGUGAUGGAGAUGAAU&UUUUAUCUUCGUUACCUUU-UC	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN544_c0_g1_450_TPlot.pdf
TRINITY_DN544_c0_g1:451	si_s803	TRINITY_DN544_c0_g1	440	460	451	-26.00	-22.30	0.857692307692308	8.5	3-20,458-441	1-2,460-459[UP5];21-21,440-440[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UGGAGGUGAUGGAGAUGAAUC&AUUUUAUCUUCGUUACCUUUU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN544_c0_g1_451_TPlot.pdf
TRINITY_DN544_c0_g1:452	si_s802	TRINITY_DN544_c0_g1	441	461	452	-26.40	-22.30	0.84469696969697	9	4-21,458-441	1-3,461-459[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGAGGUGAUGGAGAUGAAUCA&UAUUUUAUCUUCGUUACCUUU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN544_c0_g1_452_TPlot.pdf
TRINITY_DN544_c0_g1:453	si_s801	TRINITY_DN544_c0_g1	442	462	453	-28.20	-23.00	0.815602836879433	7.5	1-2,462-461;5-21,458-442	3-4,460-459[SIL]	(((((((((((((((((..((&))..)))))))))))))))))	GAGGUGAUGGAGAUGAAUCAC&GUAUUUUAUCUUCGUUACCUU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN544_c0_g1_453_TPlot.pdf
TRINITY_DN544_c0_g1:454	si_s800	TRINITY_DN544_c0_g1	443	463	454	-29.70	-22.00	0.740740740740741	7.5	2-3,462-461;6-21,458-443	1-1,463-463[UP5];4-5,460-459[SIL]	((((((((((((((((..((.&.))..))))))))))))))))	AGGUGAUGGAGAUGAAUCACC&CGUAUUUUAUCUUCGUUACCU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN544_c0_g1_454_TPlot.pdf
TRINITY_DN544_c0_g1:455	si_s799	TRINITY_DN544_c0_g1	444	464	455	-30.00	-20.70	0.69	9.5	3-4,462-461;7-21,458-444	1-2,464-463[UP5];5-6,460-459[SIL]	(((((((((((((((..((..&..))..)))))))))))))))	GGUGAUGGAGAUGAAUCACCU&UCGUAUUUUAUCUUCGUUACC	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN544_c0_g1_455_TPlot.pdf
TRINITY_DN544_c0_g1:613	si_a637	TRINITY_DN544_c0_g1	598	622	613	-25.80	-16.90	0.655038759689922	14	1-12,622-611;13-17,606-602	x-x,610-607[BULt];18-21,601-598[UP3]	....(((((....((((((((((((&))))))))))))----)))))....	CCAGUACUCCUAAAAAGAAAUCGGC&GUCGAUUUUUUU----GAGUAAUAU	3	0.99999999997699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN544_c0_g1_613_TPlot.pdf
TRINITY_DN544_c0_g1:615	si_a635	TRINITY_DN544_c0_g1	600	624	615	-26.10	-17.00	0.651340996168582	11	3-14,622-611;15-19,606-602	1-2,624-623[UP5];x-x,610-607[BULt];20-21,601-600[UP3]	..(((((....((((((((((((..&..))))))))))))----)))))..	AGUACUCCUAAAAAGAAAUCGGCGC&AUGUCGAUUUUUUU----GAGUAAU	3	0.999999999999985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN544_c0_g1_615_TPlot.pdf
TRINITY_DN544_c0_g1:632	si_a869	TRINITY_DN544_c0_g1	621	643	632	-24.80	-16.18	0.65241935483871	14	1-7,643-637;10-19,632-623	8-9,636-633[AILt];20-21,622-621[UP3]	..((((((((((....(((((((&)))))))--..))))))))))..	GCGCGACUGAGUAAAGUUAGUGA&UUAUUAA--AGAUUUAGUUGCAA	4	0.999959522161233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN544_c0_g1_632_TPlot.pdf
TRINITY_DN544_c0_g1:633	si_a868	TRINITY_DN544_c0_g1	622	644	633	-24.80	-16.18	0.65241935483871	14	2-8,643-637;11-20,632-623	1-1,644-644[UP5];9-10,636-633[AILt];21-21,622-622[UP3]	.((((((((((....(((((((.&.)))))))--..)))))))))).	CGCGACUGAGUAAAGUUAGUGAA&AUUAUUAA--AGAUUUAGUUGCA	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN544_c0_g1_633_TPlot.pdf
TRINITY_DN544_c0_g1:800	si_s77	TRINITY_DN544_c0_g1	789	809	800	-25.50	-16.80	0.658823529411765	3	1-12,809-798;15-21,795-789	13-14,797-796[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAGAAACCGAAGAAAAAAAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN544_c0_g1_800_TPlot.pdf
TRINITY_DN544_c0_g1:903	si_s83	TRINITY_DN544_c0_g1	891	912	903	-30.90	-24.50	0.792880258899676	5.5	2-11,911-902;12-20,900-892	1-1,912-912[UP5];x-x,901-901[BULt];21-21,891-891[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AAAGAGGAAGAAGAGGAAAGAU&UUCUUUCCUUU-CUUCUUCUUC	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN544_c0_g1_903_TPlot.pdf
TRINITY_DN54504_c0_g1:894	si_a184	TRINITY_DN54504_c0_g1	883	903	894	-31.70	-21.40	0.675078864353312	12	6-19,898-885	1-5,903-899[UP5];20-21,884-883[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGCAGGGGAAGAUAUAAAAU&AGAUAAUAUCUUUCCCUGUUC	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN54504_c0_g1_894_TPlot.pdf
TRINITY_DN5450_c0_g1:117	si_s132	TRINITY_DN5450_c0_g1	106	126	117	-28.40	-19.60	0.690140845070423	8	1-9,126-118;11-16,116-111	10-10,117-117[SIL];17-21,110-106[UP3]	.....((((((.(((((((((&))))))))).)))))).....	CCCGCUGAUUGUUUCAGCUCU&AGAGUUGAAUCAAUCAAAAAC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN5450_c0_g1_117_TPlot.pdf
TRINITY_DN5450_c0_g1:118	si_s131	TRINITY_DN5450_c0_g1	107	127	118	-26.70	-19.80	0.741573033707865	8	2-10,126-118;12-17,116-111	1-1,127-127[UP5];11-11,117-117[SIL];18-21,110-107[UP3]	....((((((.(((((((((.&.))))))))).))))))....	CCGCUGAUUGUUUCAGCUCUA&AAGAGUUGAAUCAAUCAAAAA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN5450_c0_g1_118_TPlot.pdf
TRINITY_DN5450_c0_g2:1006	si_a511	TRINITY_DN5450_c0_g2	995	1014	1006	-38.40	-25.22	0.656770833333333	10.5	1-7,1014-1008;12-21,1004-995	8-11,1007-1005[AILq]	((((((((((...-(((((((&)))))))....))))))))))	CUGCCUUACAAAG-GAGGGAG&CUUCCUUGGAAUGUAAGGCGG	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN5450_c0_g2_1006_TPlot.pdf
TRINITY_DN5450_c0_g2:166	si_a435	TRINITY_DN5450_c0_g2	155	177	166	-36.10	-23.80	0.659279778393352	7	1-3,177-175;4-7,173-170;8-17,168-159;19-20,157-156	x-x,174-174[BULt];x-x,169-169[BULt];18-18,158-158[SIL];21-21,155-155[UP3]	.((.((((((((((.((((.(((&)))-))))-)))))))))).)).	AGUGUCAUAUCCAACCGGAGUCU&GGA-UCCG-UUGGAUAUGAGAUA	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a435_TRINITY_DN5450_c0_g2_166_TPlot.pdf
TRINITY_DN5450_c0_g2:845	si_a317	TRINITY_DN5450_c0_g2	834	854	845	-24.30	-16.28	0.669958847736626	10	1-3,854-852;7-19,848-836	4-6,851-849[SIL];20-21,835-834[UP3]	..(((((((((((((...(((&)))...)))))))))))))..	UCAAAGGAUCGUGGAGGUAUC&GAUUUAUCCAUGAUUUUUUUA	3	0.999999988722434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN5450_c0_g2_845_TPlot.pdf
TRINITY_DN5450_c0_g2:848	si_a314	TRINITY_DN5450_c0_g2	837	857	848	-27.10	-19.48	0.718819188191882	10.5	3-6,855-852;10-21,848-837	1-2,857-856[UP5];7-9,851-849[SIL]	((((((((((((...((((..&..))))...))))))))))))	AAGGAUCGUGGAGGUAUCCGU&UUGGAUUUAUCCAUGAUUUUU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN5450_c0_g2_848_TPlot.pdf
TRINITY_DN54512_c0_g1:1006	si_a766	TRINITY_DN54512_c0_g1	995	1015	1006	-30.50	-24.10	0.79016393442623	5	1-10,1015-1006;13-18,1003-998;20-21,996-995	11-12,1005-1004[SIL];19-19,997-997[SIL]	((.((((((..((((((((((&))))))))))..)))))).))	AGAUGAAUCUUUCAAAAACCC&GGGUUUUUGAUUGAUUCAACU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN54512_c0_g1_1006_TPlot.pdf
TRINITY_DN54512_c0_g1:1009	si_a763	TRINITY_DN54512_c0_g1	998	1018	1009	-28.80	-23.20	0.805555555555555	6	3-13,1016-1006;16-21,1003-998	1-2,1018-1017[UP5];14-15,1005-1004[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UGAAUCUUUCAAAAACCCGUU&UUUGGGUUUUUGAUUGAUUCA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN54512_c0_g1_1009_TPlot.pdf
TRINITY_DN54513_c0_g1:2132	si_a643	TRINITY_DN54513_c0_g1	2124	2141	2132	-28.30	-18.62	0.657950530035336	10	2-11,2140-2131;17-21,2128-2124	1-1,2141-2141[UP5];12-16,2130-2129[AILq]	(((((..---((((((((((.&.)))))))))).....)))))	CCCGAGG---UGCUCAAGGAU&UUUUUUGAGUAAUAUAUCGGG	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN54513_c0_g1_2132_TPlot.pdf
TRINITY_DN54513_c0_g1:3855	si_s80	TRINITY_DN54513_c0_g1	3839	3864	3855	-28.20	-19.32	0.685106382978723	11.5	2-13,3863-3852;15-21,3845-3839	1-1,3864-3864[UP5];14-14,3851-3846[AILt]	(((((((......((((((((((((.&.))))))))))))-----.)))))))	GGAGAGGCGCGAUGAGGAGGGAGAAG&UUUUUCUUUCCUU-----UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN54513_c0_g1_3855_TPlot.pdf
TRINITY_DN54513_c0_g1:3862	si_a498	TRINITY_DN54513_c0_g1	3851	3874	3862	-33.50	-22.00	0.656716417910448	13.5	1-6,3874-3869;7-11,3865-3861;13-20,3859-3852	x-x,3868-3866[BULt];12-12,3860-3860[SIL];21-21,3851-3851[UP3]	.((((((((.(((((...((((((&))))))---))))).)))))))).	UGAGGAGGGAGAAGAAUUGCGGCA&UGUCGU---UUUUCGUCUUCCUUG	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN54513_c0_g1_3862_TPlot.pdf
TRINITY_DN54513_c0_g1:3997	si_s39	TRINITY_DN54513_c0_g1	3984	4006	3997	-22.30	-14.58	0.653811659192825	12.5	3-12,4004-3995;15-20,3990-3985	1-2,4006-4005[UP5];13-14,3994-3991[AILt];21-21,3984-3984[UP3]	.((((((....((((((((((..&..))))))))))--..)))))).	UGAUCCAGAAGUAUUGGAGAUAA&AAAUCUUUAAUA--AUUGGAUUU	2	0.999919054515961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN54513_c0_g1_3997_TPlot.pdf
TRINITY_DN54513_c0_g1:695	si_a498	TRINITY_DN54513_c0_g1	684	704	695	-33.50	-21.90	0.653731343283582	10	2-11,703-694;13-19,692-686	1-1,704-704[UP5];12-12,693-693[SIL];20-21,685-684[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	UCGGGAAGGAGGGAGAUGACC&UGUCGUUUUUCGUCUUCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN54513_c0_g1_695_TPlot.pdf
TRINITY_DN54513_c0_g1:696	si_a497	TRINITY_DN54513_c0_g1	685	705	696	-32.00	-21.90	0.684375	10	3-12,703-694;14-20,692-686	1-2,705-704[UP5];13-13,693-693[SIL];21-21,685-685[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CGGGAAGGAGGGAGAUGACCU&AUGUCGUUUUUCGUCUUCCUU	3	0.99999999996945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN54513_c0_g1_696_TPlot.pdf
TRINITY_DN54513_c0_g1:697	si_a496	TRINITY_DN54513_c0_g1	686	706	697	-32.40	-21.90	0.675925925925926	11	4-13,703-694;15-21,692-686	1-3,706-704[UP5];14-14,693-693[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GGGAAGGAGGGAGAUGACCUG&UAUGUCGUUUUUCGUCUUCCU	3	0.999999994099649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN54513_c0_g1_697_TPlot.pdf
TRINITY_DN54513_c0_g1:698	si_s78	TRINITY_DN54513_c0_g1	687	708	698	-26.20	-17.60	0.67175572519084	15.5	7-8,702-701;9-21,699-687	1-6,708-703[UP5];x-x,700-700[BULt]	(((((((((((((.((......&......))-)))))))))))))	GGAAGGAGGGAGAUGACCUGAU&UUUUUUUC-UUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN54513_c0_g1_698_TPlot.pdf
TRINITY_DN54517_c0_g1:233	si_s84	TRINITY_DN54517_c0_g1	221	242	233	-32.30	-25.60	0.792569659442725	4.5	2-19,241-224;20-21,222-221	1-1,242-242[UP5];x-x,223-223[BULt]	((.((((((((((((((((((.&.))))))))))))))))))-))	UGCAAGAAGAAGAAAGGGAGGU&UCUUUCCUUUCUUCUUCUU-CG	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN54517_c0_g1_233_TPlot.pdf
TRINITY_DN54517_c0_g1:697	si_s68	TRINITY_DN54517_c0_g1	686	707	697	-23.10	-16.50	0.714285714285714	9	1-8,707-700;11-21,696-686	9-10,699-697[AILt]	(((((((((((...((((((((&))))))))-..)))))))))))	AAGGGGAGAAACCAAGAGGUUG&CAACUUCU-AUUUUUUUUCUUU	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN54517_c0_g1_697_TPlot.pdf
TRINITY_DN54524_c0_g1:29	si_a498	TRINITY_DN54524_c0_g1	18	38	29	-33.50	-22.00	0.656716417910448	6.5	3-4,36-35;6-14,33-25;16-21,23-18	1-2,38-37[UP5];5-5,34-34[SIL];15-15,24-24[SIL]	((((((.(((((((((.((..&..)).))))))))).))))))	UAAGGAUGACGAAAAAGGAAC&UGUCGUUUUUCGUCUUCCUUG	2	0.999999997781167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN54524_c0_g1_29_TPlot.pdf
TRINITY_DN54524_c0_g1:30	si_a497	TRINITY_DN54524_c0_g1	19	39	30	-32.00	-20.90	0.653125	8	4-5,36-35;7-15,33-25;17-21,23-19	1-3,39-37[UP5];6-6,34-34[SIL];16-16,24-24[SIL]	(((((.(((((((((.((...&...)).))))))))).)))))	AAGGAUGACGAAAAAGGAACU&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN54524_c0_g1_30_TPlot.pdf
TRINITY_DN54526_c0_g1:492	si_a798	TRINITY_DN54526_c0_g1	480	501	492	-34.10	-22.20	0.651026392961877	9	1-10,501-492;11-14,489-486;17-21,484-480	x-x,491-490[BULt];15-16,485-485[AILq]	(((((.-((((..((((((((((&))))))))))--))))..)))))	UCGCUA-GGAUAAUGGAAGGUGG&CUAUUUUCCA--AUCCGAAGCGA	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a798_TRINITY_DN54526_c0_g1_492_TPlot.pdf
TRINITY_DN54526_c0_g1:895	si_a30	TRINITY_DN54526_c0_g1	873	904	895	-32.70	-22.30	0.681957186544342	25	1-11,904-894;12-19,882-875	x-x,893-883[BULt];20-21,874-873[UP3]	..((((((((...........(((((((((((&)))))))))))-----------))))))))..	CAACCGGUCUUAUUCCCUCAUUAGAACUAGAA&UUUUAGUUCUA-----------AGACCGGUAG	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a30_TRINITY_DN54526_c0_g1_895_TPlot.pdf
TRINITY_DN54526_c0_g1:896	si_a29	TRINITY_DN54526_c0_g1	874	905	896	-31.00	-22.50	0.725806451612903	25	2-12,904-894;13-20,882-875	1-1,905-905[UP5];x-x,893-883[BULt];21-21,874-874[UP3]	.((((((((...........(((((((((((.&.)))))))))))-----------)))))))).	AACCGGUCUUAUUCCCUCAUUAGAACUAGAAG&UUUUUAGUUCUA-----------AGACCGGUA	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN54526_c0_g1_896_TPlot.pdf
TRINITY_DN54526_c0_g1:897	si_a28	TRINITY_DN54526_c0_g1	875	906	897	-30.70	-22.20	0.723127035830619	15	3-13,904-894;14-21,882-875	1-2,906-905[UP5];x-x,893-883[BULt]	((((((((...........(((((((((((..&..)))))))))))-----------))))))))	ACCGGUCUUAUUCCCUCAUUAGAACUAGAAGA&AUUUUUAGUUCUA-----------AGACCGGU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN54526_c0_g1_897_TPlot.pdf
TRINITY_DN54526_c0_g1:898	si_a27	TRINITY_DN54526_c0_g1	876	907	898	-30.30	-20.90	0.68976897689769	17	4-14,904-894;15-21,882-876	1-3,907-905[UP5];x-x,893-883[BULt]	(((((((...........(((((((((((...&...)))))))))))-----------)))))))	CCGGUCUUAUUCCCUCAUUAGAACUAGAAGAA&UAUUUUUAGUUCUA-----------AGACCGG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN54526_c0_g1_898_TPlot.pdf
TRINITY_DN54526_c0_g1:912	si_s81	TRINITY_DN54526_c0_g1	901	921	912	-28.90	-19.20	0.664359861591695	8.5	5-13,917-909;15-21,907-901	1-4,921-918[UP5];14-14,908-908[SIL]	(((((((.(((((((((....&....))))))))).)))))))	AGAAGAACGAAGGAAAGCGUU&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN54526_c0_g1_912_TPlot.pdf
TRINITY_DN54536_c0_g1:725	si_s70	TRINITY_DN54536_c0_g1	714	737	725	-25.80	-17.60	0.682170542635659	9.5	1-4,737-734;5-9,730-726;11-21,724-714	x-x,733-731[BULt];10-10,725-725[SIL]	(((((((((((.(((((...((((&))))---))))).)))))))))))	GGAAGGAAAAAUAAUGGCCCAAGU&ACUU---CUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN54536_c0_g1_725_TPlot.pdf
TRINITY_DN5453_c0_g1:75	si_s667	TRINITY_DN5453_c0_g1	63	84	75	-28.90	-19.10	0.660899653979239	8.5	2-15,83-70;18-20,66-64	1-1,84-84[UP5];16-17,69-67[AILt];21-21,63-63[UP3]	.(((...((((((((((((((.&.))))))))))))))-..))).	GUUCGUUUGAUCGGUUCGGUCA&GGAUCGAAUUGAUUA-UAGAAA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN5453_c0_g1_75_TPlot.pdf
TRINITY_DN5453_c0_g1:81	si_s359	TRINITY_DN5453_c0_g1	70	90	81	-32.20	-21.70	0.673913043478261	15.5	8-21,83-70	1-7,90-84[UP5]	((((((((((((((.......&.......))))))))))))))	UGAUCGGUUCGGUCAUAGUUA&AGAAAUAGAUUGAACCGAUCG	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s359_TRINITY_DN5453_c0_g1_81_TPlot.pdf
TRINITY_DN5453_c0_g1:82	si_s358	TRINITY_DN5453_c0_g1	71	91	82	-30.70	-21.00	0.684039087947883	17	9-21,83-71	1-8,91-84[UP5]	(((((((((((((........&........)))))))))))))	GAUCGGUUCGGUCAUAGUUAG&AAGAAAUAGAUUGAACCGAUC	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s358_TRINITY_DN5453_c0_g1_82_TPlot.pdf
TRINITY_DN54548_c0_g1:1028	si_s94	TRINITY_DN54548_c0_g1	1016	1041	1028	-35.50	-23.70	0.667605633802817	15	1-8,1041-1034;9-10,1029-1028;11-19,1026-1018	x-x,1033-1030[BULt];x-x,1027-1027[BULt];20-21,1017-1016[UP3]	..(((((((((.((....((((((((&))))))))----))-)))))))))..	GCGUCCGGAGCUGAUGACGGGAGAAG&CUUCUUCU----UC-GCUUCGGAUUG	4	0.999999786133772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN54548_c0_g1_1028_TPlot.pdf
TRINITY_DN54548_c0_g1:1773	si_a503	TRINITY_DN54548_c0_g1	1761	1782	1773	-32.10	-21.00	0.654205607476635	11	5-6,1778-1777;8-13,1775-1770;14-21,1768-1761	1-4,1782-1779[UP5];7-7,1776-1776[SIL];x-x,1769-1769[BULt]	((((((((.((((((.((....&....)).))))))-))))))))	UAUUCCAGUGGAAGAGGAUGAC&UUUUUCGUCUUCC-UUGGAAUG	3	0.999999999592281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN54548_c0_g1_1773_TPlot.pdf
TRINITY_DN54548_c0_g1:1774	si_a502	TRINITY_DN54548_c0_g1	1762	1782	1774	-32.10	-21.00	0.654205607476635	8.5	1-3,1782-1780;6-7,1778-1777;9-14,1775-1770;15-21,1768-1762	4-5,1779-1779[AILq];8-8,1776-1776[SIL];x-x,1769-1769[BULt]	(((((((.((((((.((.-(((&)))..)).))))))-)))))))	AUUCCAGUGGAAGAGGAU-GAC&GUUUUUCGUCUUCC-UUGGAAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN54548_c0_g1_1774_TPlot.pdf
TRINITY_DN54548_c0_g1:1904	si_a762	TRINITY_DN54548_c0_g1	1892	1914	1904	-29.70	-20.40	0.686868686868687	7	1-6,1914-1909;7-19,1907-1895;20-21,1893-1892	x-x,1908-1908[BULt];x-x,1894-1894[BULt]	((.(((((((((((((.((((((&))))))-)))))))))))))-))	GAUAUUGAUCAAGAGCACCAAGG&CUUUGG-GUUUUUGAUUGAU-UC	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN54548_c0_g1_1904_TPlot.pdf
TRINITY_DN54548_c0_g1:1905	si_a761	TRINITY_DN54548_c0_g1	1894	1915	1905	-30.10	-20.00	0.664451827242525	8	2-7,1914-1909;8-20,1907-1895	1-1,1915-1915[UP5];x-x,1908-1908[BULt];21-21,1894-1894[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	UAUUGAUCAAGAGCACCAAGGC&CCUUUGG-GUUUUUGAUUGAUU	2	0.999986346763381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN54548_c0_g1_1905_TPlot.pdf
TRINITY_DN54548_c0_g1:1962	si_a326	TRINITY_DN54548_c0_g1	1951	1971	1962	-26.20	-20.40	0.778625954198473	4.5	1-15,1971-1957;17-21,1955-1951	16-16,1956-1956[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GACGAUGAAUAGAAGAAUCGU&AUGAUUUUUUUAUUCCUUGUC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN54548_c0_g1_1962_TPlot.pdf
TRINITY_DN54548_c0_g1:1963	si_a325	TRINITY_DN54548_c0_g1	1952	1972	1963	-25.90	-17.50	0.675675675675676	5.5	2-16,1971-1957;18-21,1955-1952	1-1,1972-1972[UP5];17-17,1956-1956[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	ACGAUGAAUAGAAGAAUCGUC&CAUGAUUUUUUUAUUCCUUGU	4	0.999989198946718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN54548_c0_g1_1963_TPlot.pdf
TRINITY_DN54548_c0_g1:404	si_a426	TRINITY_DN54548_c0_g1	393	413	404	-31.80	-20.70	0.650943396226415	16	6-10,408-404;13-20,401-394	1-5,413-409[UP5];11-12,403-402[SIL];21-21,393-393[UP3]	.((((((((..(((((.....&.....)))))..)))))))).	CCCAACGGAGACUGUGGCCCG&AUAAAUAUAGGAUCCGUUGGA	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a426_TRINITY_DN54548_c0_g1_404_TPlot.pdf
TRINITY_DN54548_c0_g1:851	si_s168	TRINITY_DN54548_c0_g1	837	860	851	-45.40	-30.26	0.666519823788546	13.5	1-6,860-855;8-10,853-851;14-17,845-842;18-21,840-837	7-7,854-854[SIL];11-13,850-846[AILt];x-x,841-841[BULt]	((((.((((.....(((.((((((&)))))).)))--...))))-))))	CGGGCCGUCAGGAAGCCGCUGGCC&GGCCAGGGGU--AAAGAUG-CCCG	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s168_TRINITY_DN54548_c0_g1_851_TPlot.pdf
TRINITY_DN54548_c0_g1:965	si_a567	TRINITY_DN54548_c0_g1	954	972	965	-36.40	-23.90	0.656593406593407	9.5	3-7,970-966;10-21,965-954	1-2,972-971[UP5];8-9,x-x[BULq]	((((((((((((--(((((..&..)))))..))))))))))))	CAAGCGUGCGAU--GCGGGAG&UCCCCGUGAAUCGUAUGUUUG	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a567_TRINITY_DN54548_c0_g1_965_TPlot.pdf
TRINITY_DN5454_c0_g1:2646	si_a128	TRINITY_DN5454_c0_g1	2635	2655	2646	-23.20	-16.00	0.689655172413793	7.5	2-18,2654-2638	1-1,2655-2655[UP5];19-21,2637-2635[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UCAAAUUAUUGUUGUUGUAAU&UUUAUAGCAAUAGUAAUUAAU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN5454_c0_g1_2646_TPlot.pdf
TRINITY_DN5454_c0_g1:451	si_a865	TRINITY_DN5454_c0_g1	440	461	451	-24.00	-15.60	0.65	7.5	1-9,461-453;10-12,451-449;15-21,446-440	x-x,452-452[BULt];13-14,448-447[SIL]	(((((((..(((.(((((((((&)))))))))-)))..)))))))	GACUGGAGAUUUCAAUGGUUGG&CCAAUUAUU-AAAGAUUUAGUU	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN5454_c0_g1_451_TPlot.pdf
TRINITY_DN54556_c0_g1:78	si_s8	TRINITY_DN54556_c0_g1	67	88	78	-21.30	-14.22	0.667605633802817	10.5	2-9,87-80;13-21,75-67	1-1,88-88[UP5];10-12,79-76[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	AAUAUAGUGUUUUAUGAGUAAA&AUUACUUAU-UAUUACUAUAUU	2	0.999639564237272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN54556_c0_g1_78_TPlot.pdf
TRINITY_DN5455_c0_g1:1948	si_s773	TRINITY_DN5455_c0_g1	1937	1957	1948	-23.10	-15.30	0.662337662337662	13	4-15,1954-1943	1-3,1957-1955[UP5];16-21,1942-1937[UP3]	......((((((((((((...&...))))))))))))......	GUCUUCAGCAGUAGUAGUGGA&UUAAUUACUAUUGCUAUAAAA	2	0.999715470504334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN5455_c0_g1_1948_TPlot.pdf
TRINITY_DN5455_c0_g1:2427	si_s439	TRINITY_DN5455_c0_g1	2416	2436	2427	-21.50	-15.40	0.716279069767442	9.5	4-14,2433-2423;16-21,2421-2416	1-3,2436-2434[UP5];15-15,2422-2422[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UGUUAUCUGUGAUGUGUGCUA&AAUUACAUAUUAUAUAUAACA	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN5455_c0_g1_2427_TPlot.pdf
TRINITY_DN5455_c0_g1:308	si_s700	TRINITY_DN5455_c0_g1	296	317	308	-29.20	-19.20	0.657534246575342	10.5	4-18,314-300;19-20,298-297	1-3,317-315[UP5];x-x,299-299[BULt];21-21,296-296[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	AGUGUCGCUAGUAAGUCGGGGA&UAGUCGAUUUAUUAGUGA-ACA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN5455_c0_g1_308_TPlot.pdf
TRINITY_DN5455_c0_g1:309	si_s699	TRINITY_DN5455_c0_g1	297	318	309	-28.60	-18.70	0.653846153846154	11	5-19,314-300;20-21,298-297	1-4,318-315[UP5];x-x,299-299[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	GUGUCGCUAGUAAGUCGGGGAG&UUAGUCGAUUUAUUAGUGA-AC	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN5455_c0_g1_309_TPlot.pdf
TRINITY_DN54560_c0_g1:299	si_s377	TRINITY_DN54560_c0_g1	288	307	299	-44.10	-28.70	0.650793650793651	8.5	1-6,307-302;8-10,301-299;12-18,297-291	7-7,x-x[BULq];11-11,298-298[SIL];19-21,290-288[UP3]	...(((((((.(((-((((((&)))))).))).)))))))...	UACGGGCGGAGAUG-GAGCGA&UCGCUCGCGUGUCCGCCUUAC	1	0.0913978802348692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN54560_c0_g1_299_TPlot.pdf
TRINITY_DN54562_c0_g1:490	si_s771	TRINITY_DN54562_c0_g1	479	498	490	-25.20	-18.40	0.73015873015873	5	1-5,498-494;7-20,493-480	6-6,x-x[BULq];21-21,479-479[UP3]	.((((((((((((((-(((((&))))).)))))))))))))).	AUAUAGUGAUAGUAA-UAGUC&GAUUAAUUACUAUUGCUAUAA	1	0.0187936371322712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN54562_c0_g1_490_TPlot.pdf
TRINITY_DN54569_c0_g1:1495	si_a764	TRINITY_DN54569_c0_g1	1484	1504	1495	-28.90	-18.80	0.650519031141869	9.5	1-15,1504-1490	16-21,1489-1484[UP3]	......(((((((((((((((&)))))))))))))))......	GCGUUCCAAUCAGAGAUCCAG&UUGGGUUUUUGAUUGAUUCAA	4	0.999999999796303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN54569_c0_g1_1495_TPlot.pdf
TRINITY_DN54569_c0_g1:1699	si_a505	TRINITY_DN54569_c0_g1	1685	1708	1699	-33.30	-23.80	0.714714714714715	11	4-16,1705-1693;17-20,1689-1686	1-3,1708-1706[UP5];x-x,1692-1690[BULt];21-21,1685-1685[UP3]	.((((...(((((((((((((...&...)))))))))))))---)))).	AGCAUCGAUCCGGGGAAGACGCGA&UUUCGUCUUCCUUGGA---AUGUA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN54569_c0_g1_1699_TPlot.pdf
TRINITY_DN54569_c0_g1:660	si_s364	TRINITY_DN54569_c0_g1	647	669	660	-38.50	-25.90	0.672727272727273	7	2-5,668-665;7-15,663-655;16-17,653-652;18-21,650-647	1-1,669-669[UP5];6-6,664-664[SIL];x-x,654-654[BULt];x-x,651-651[BULt]	((((.((.(((((((((.((((.&.)))).)))))))))-))-))))	GCGGCGCUGGUCGGUUCUGUCUC&UAGAUUGAACCGAUC-GC-UCGC	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s364_TRINITY_DN54569_c0_g1_660_TPlot.pdf
TRINITY_DN54569_c0_g1:802	si_s89	TRINITY_DN54569_c0_g1	793	811	802	-35.30	-26.70	0.756373937677054	4.5	1-16,811-796;19-21,795-793	17-18,x-x[BULq]	(((--((((((((((((((((&))))))))))))))))..)))	CGA--CGAGGGAGAAGAAGGG&CCUUUCUUCUUCUUCGCUUCG	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN54569_c0_g1_802_TPlot.pdf
TRINITY_DN54569_c0_g1:803	si_s88	TRINITY_DN54569_c0_g1	785	812	803	-34.80	-27.00	0.775862068965517	10	1-17,812-796;18-21,788-785	x-x,795-789[BULt]	((((.......(((((((((((((((((&)))))))))))))))))-------))))	GAGGUCUGCGACGAGGGAGAAGAAGGGA&UCCUUUCUUCUUCUUCG-------CUUC	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN54569_c0_g1_803_TPlot.pdf
TRINITY_DN54569_c0_g1:806	si_s85	TRINITY_DN54569_c0_g1	795	815	806	-33.80	-31.20	0.923076923076923	4	1-20,815-796	21-21,795-795[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	ACGAGGGAGAAGAAGGGAAGG&CUUUCCUUUCUUCUUCUUCGC	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN54569_c0_g1_806_TPlot.pdf
TRINITY_DN54569_c0_g1:812	si_s79	TRINITY_DN54569_c0_g1	801	821	812	-26.20	-23.80	0.908396946564886	9	5-21,817-801	1-4,821-818[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGAAGAAGGGAAGGAAUGCA&UUUUUUCUUUCCUUUCUUCUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN54569_c0_g1_812_TPlot.pdf
TRINITY_DN54569_c0_g1:814	si_s77	TRINITY_DN54569_c0_g1	803	823	814	-25.50	-21.20	0.831372549019608	12.5	7-21,817-803	1-6,823-818[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGAAGGGAAGGAAUGCAUC&UUUUUUUUCUUUCCUUUCUUC	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN54569_c0_g1_814_TPlot.pdf
TRINITY_DN54569_c0_g1:815	si_s76	TRINITY_DN54569_c0_g1	804	824	815	-23.60	-18.00	0.76271186440678	14.5	8-21,817-804	1-7,824-818[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAGGGAAGGAAUGCAUCA&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN54569_c0_g1_815_TPlot.pdf
TRINITY_DN5456_c1_g2:971	si_a407	TRINITY_DN5456_c1_g2	960	980	971	-19.80	-13.30	0.671717171717172	9.5	1-9,980-972;11-17,970-964	10-10,971-971[SIL];18-21,963-960[UP3]	....(((((((.(((((((((&))))))))).)))))))....	UCUGAGGUGUGCGCAAAACAA&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5456_c1_g2_971_TPlot.pdf
TRINITY_DN54572_c0_g1:610	si_a776	TRINITY_DN54572_c0_g1	599	620	610	-27.10	-18.10	0.66789667896679	9	1-3,620-618;5-16,615-604	4-4,617-616[AILt];17-21,603-599[UP3]	.....((((((((((((..(((&)))-.)))))))))))).....	ACUGAAGAAGAGUUGAAGACAA&UUG-AUUCAACUCUUCUAUUUU	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN54572_c0_g1_610_TPlot.pdf
TRINITY_DN54572_c0_g1:611	si_a775	TRINITY_DN54572_c0_g1	600	621	611	-27.20	-19.40	0.713235294117647	8	1-4,621-618;6-17,615-604	5-5,617-616[AILt];18-21,603-600[UP3]	....((((((((((((..((((&))))-.))))))))))))....	CUGAAGAAGAGUUGAAGACAAU&AUUG-AUUCAACUCUUCUAUUU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN54572_c0_g1_611_TPlot.pdf
TRINITY_DN54572_c0_g1:612	si_a774	TRINITY_DN54572_c0_g1	601	622	612	-29.20	-19.70	0.674657534246575	8	2-5,621-618;7-18,615-604	1-1,622-622[UP5];6-6,617-616[AILt];19-21,603-601[UP3]	...((((((((((((..((((.&.))))-.))))))))))))...	UGAAGAAGAGUUGAAGACAAUA&GAUUG-AUUCAACUCUUCUAUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN54572_c0_g1_612_TPlot.pdf
TRINITY_DN54572_c0_g1:613	si_a773	TRINITY_DN54572_c0_g1	602	623	613	-29.90	-19.70	0.658862876254181	9	3-6,621-618;8-19,615-604	1-2,623-622[UP5];7-7,617-616[AILt];20-21,603-602[UP3]	..((((((((((((..((((..&..))))-.))))))))))))..	GAAGAAGAGUUGAAGACAAUAG&UGAUUG-AUUCAACUCUUCUAU	2	0.93690066453088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a773_TRINITY_DN54572_c0_g1_613_TPlot.pdf
TRINITY_DN54572_c0_g1:614	si_a772	TRINITY_DN54572_c0_g1	603	624	614	-29.80	-19.70	0.661073825503356	10	4-7,621-618;9-20,615-604	1-3,624-622[UP5];8-8,617-616[AILt];21-21,603-603[UP3]	.((((((((((((..((((...&...))))-.)))))))))))).	AAGAAGAGUUGAAGACAAUAGA&UUGAUUG-AUUCAACUCUUCUA	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN54572_c0_g1_614_TPlot.pdf
TRINITY_DN54572_c0_g1:615	si_a771	TRINITY_DN54572_c0_g1	604	625	615	-29.40	-19.40	0.659863945578231	11	5-8,621-618;10-21,615-604	1-4,625-622[UP5];9-9,617-616[AILt]	((((((((((((..((((....&....))))-.))))))))))))	AGAAGAGUUGAAGACAAUAGAU&UUUGAUUG-AUUCAACUCUUCU	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN54572_c0_g1_615_TPlot.pdf
TRINITY_DN54572_c0_g1:734	si_a411	TRINITY_DN54572_c0_g1	723	743	734	-17.90	-11.80	0.659217877094972	6.5	1-3,743-741;5-14,739-730;16-21,728-723	4-4,740-740[SIL];15-15,729-729[SIL]	((((((.((((((((((.(((&))).)))))))))).))))))	AUUUAUCUGAAUGUGAGGAAA&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999978345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN54572_c0_g1_734_TPlot.pdf
TRINITY_DN54572_c0_g1:735	si_a410	TRINITY_DN54572_c0_g1	724	744	735	-17.80	-11.60	0.651685393258427	6.5	1-4,744-741;6-15,739-730;17-21,728-724	5-5,740-740[SIL];16-16,729-729[SIL]	(((((.((((((((((.((((&)))).)))))))))).)))))	UUUAUCUGAAUGUGAGGAAAA&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN54572_c0_g1_735_TPlot.pdf
TRINITY_DN54577_c0_g1:473	si_a408	TRINITY_DN54577_c0_g1	462	482	473	-20.10	-13.10	0.651741293532338	10	1-8,482-475;10-16,473-467	9-9,474-474[SIL];17-21,466-462[UP3]	.....(((((((.((((((((&)))))))).))))))).....	AAAAAGGAUAUAUGCAAAGCA&UGUUUUGUUUAUAUUUAAAUA	2	0.999999999673631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN54577_c0_g1_473_TPlot.pdf
TRINITY_DN54577_c0_g1:474	si_a407	TRINITY_DN54577_c0_g1	463	483	474	-19.80	-13.30	0.671717171717172	10	2-9,482-475;11-17,473-467	1-1,483-483[UP5];10-10,474-474[SIL];18-21,466-463[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AAAAGGAUAUAUGCAAAGCAU&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN54577_c0_g1_474_TPlot.pdf
TRINITY_DN54577_c0_g1:475	si_a406	TRINITY_DN54577_c0_g1	464	484	475	-19.80	-13.30	0.671717171717172	11	3-10,482-475;12-18,473-467	1-2,484-483[UP5];11-11,474-474[SIL];19-21,466-464[UP3]	...(((((((.((((((((..&..)))))))).)))))))...	AAAGGAUAUAUGCAAAGCAUA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN54577_c0_g1_475_TPlot.pdf
TRINITY_DN5457_c0_g1:7095	si_a501	TRINITY_DN5457_c0_g1	7084	7104	7095	-33.50	-22.10	0.659701492537313	7.5	2-12,7103-7093;15-19,7090-7086	1-1,7104-7104[UP5];13-14,7092-7091[SIL];20-21,7085-7084[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	GCCCGAGACAGACGAAGGACU&CGUUUUUCGUCUUCCUUGGAA	4	0.999999999992661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5457_c0_g1_7095_TPlot.pdf
TRINITY_DN54596_c0_g1:1154	si_s429	TRINITY_DN54596_c0_g1	1143	1163	1154	-21.10	-15.40	0.729857819905213	5.5	2-9,1162-1155;11-19,1153-1145	1-1,1163-1163[UP5];10-10,1154-1154[SIL];20-21,1144-1143[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UUUAUGUGAUUCUUGUUAUAA&AUAUAACAAUAAUUACAUAUU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN54596_c0_g1_1154_TPlot.pdf
TRINITY_DN54596_c0_g1:1155	si_s428	TRINITY_DN54596_c0_g1	1144	1164	1155	-21.50	-15.40	0.716279069767442	6.5	3-10,1162-1155;12-20,1153-1145	1-2,1164-1163[UP5];11-11,1154-1154[SIL];21-21,1144-1144[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UUAUGUGAUUCUUGUUAUAAU&UAUAUAACAAUAAUUACAUAU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN54596_c0_g1_1155_TPlot.pdf
TRINITY_DN54596_c0_g1:1156	si_s427	TRINITY_DN54596_c0_g1	1145	1165	1156	-23.00	-15.30	0.665217391304348	7.5	4-11,1162-1155;13-21,1153-1145	1-3,1165-1163[UP5];12-12,1154-1154[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	UAUGUGAUUCUUGUUAUAAUA&CUAUAUAACAAUAAUUACAUA	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s427_TRINITY_DN54596_c0_g1_1156_TPlot.pdf
TRINITY_DN54596_c0_g1:246	si_a409	TRINITY_DN54596_c0_g1	235	256	246	-19.50	-13.20	0.676923076923077	6	1-4,256-253;5-15,251-241;17-21,239-235	x-x,252-252[BULt];16-16,240-240[SIL]	(((((.(((((((((((.((((&))))-))))))))))).)))))	UUGUUAAAGUAUAAACGCAAGC&GUUU-UGUUUAUAUUUAAAUAA	4	0.999999999916152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN54596_c0_g1_246_TPlot.pdf
TRINITY_DN54596_c0_g1:717	si_s11	TRINITY_DN54596_c0_g1	705	726	717	-23.60	-15.40	0.652542372881356	9.5	2-12,725-715;15-20,711-706	1-1,726-726[UP5];13-14,714-712[AILt];21-21,705-705[UP3]	.((((((...(((((((((((.&.)))))))))))-..)))))).	UUCAGUAACUGUGAUAGUGAGC&ACUUAUUAUUAC-UAUAUUGAU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN54596_c0_g1_717_TPlot.pdf
TRINITY_DN54599_c0_g1:1380	si_a759	TRINITY_DN54599_c0_g1	1369	1392	1380	-32.60	-22.20	0.680981595092024	11	1-8,1392-1385;9-19,1381-1371	x-x,1384-1382[BULt];20-21,1370-1369[UP3]	..(((((((((((...((((((((&))))))))---)))))))))))..	GAAAUCAAAAGCUGAACAGAGGAG&CUCCUUUG---GGUUUUUGAUUGA	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN54599_c0_g1_1380_TPlot.pdf
TRINITY_DN54599_c0_g1:1381	si_a758	TRINITY_DN54599_c0_g1	1370	1393	1381	-34.00	-22.60	0.664705882352941	11	2-9,1392-1385;10-20,1381-1371	1-1,1393-1393[UP5];x-x,1384-1382[BULt];21-21,1370-1370[UP3]	.(((((((((((...((((((((.&.))))))))---))))))))))).	AAAUCAAAAGCUGAACAGAGGAGA&CCUCCUUUG---GGUUUUUGAUUG	3	0.99999950308576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN54599_c0_g1_1381_TPlot.pdf
TRINITY_DN54599_c0_g1:234	si_a68	TRINITY_DN54599_c0_g1	223	243	234	-25.40	-20.00	0.78740157480315	6.5	1-16,243-228	17-21,227-223[UP3]	.....((((((((((((((((&)))))))))))))))).....	CGGUCAGCAAUUUGAGAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN54599_c0_g1_234_TPlot.pdf
TRINITY_DN5459_c0_g1:1624	si_a513	TRINITY_DN5459_c0_g1	1613	1633	1624	-39.50	-26.30	0.665822784810127	5.5	1-5,1633-1629;7-17,1627-1617;19-21,1615-1613	6-6,1628-1628[SIL];18-18,1616-1616[SIL]	(((.(((((((((((.(((((&))))).))))))))))).)))	GUUGGUCUUACAUUUGAAGGG&UCCUUGGAAUGUAAGGCGGAC	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN5459_c0_g1_1624_TPlot.pdf
TRINITY_DN5459_c0_g1:1965	si_a69	TRINITY_DN5459_c0_g1	1954	1973	1965	-24.00	-16.20	0.675	7.5	1-7,1973-1967;10-19,1965-1956	8-9,1966-1966[AILq];20-21,1955-1954[UP3]	..((((((((((.-(((((((&)))))))..))))))))))..	AAGAAGAGCAAUA-GAAAGAG&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999539625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5459_c0_g1_1965_TPlot.pdf
TRINITY_DN5459_c0_g1:1967	si_a67	TRINITY_DN5459_c0_g1	1956	1974	1967	-27.20	-17.70	0.650735294117647	7	1-3,1974-1972;5-9,1971-1967;12-21,1965-1956	4-4,x-x[BULq];10-11,1966-1966[AILq]	((((((((((.-(((((-(((&))).)))))..))))))))))	GAAGAGCAAUA-GAAAG-AGC&GCUUCUUUCAAAUUGUUUUUC	2	0.999999998684465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN5459_c0_g1_1967_TPlot.pdf
TRINITY_DN5459_c0_g1:647	si_a632	TRINITY_DN5459_c0_g1	636	656	647	-26.10	-17.10	0.655172413793103	11.5	5-18,652-639	1-4,656-653[UP5];19-21,638-636[UP3]	...((((((((((((((....&....))))))))))))))...	UUGCAGAAAAAUCGGCAACUG&AUUAUGUCGAUUUUUUUGAGU	4	0.999999999917865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN5459_c0_g1_647_TPlot.pdf
TRINITY_DN5459_c0_g1:648	si_a631	TRINITY_DN5459_c0_g1	637	657	648	-25.70	-17.10	0.665369649805448	12.5	6-19,652-639	1-5,657-653[UP5];20-21,638-637[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGCAGAAAAAUCGGCAACUGA&UAUUAUGUCGAUUUUUUUGAG	4	0.999999034889186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN5459_c0_g1_648_TPlot.pdf
TRINITY_DN545_c0_g1:568	si_s70	TRINITY_DN545_c0_g1	557	577	568	-25.80	-18.50	0.717054263565891	5.5	2-6,576-572;8-20,570-558	1-1,577-577[UP5];7-7,571-571[SIL];21-21,557-557[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UGGAAGAAAAAGAAAAGAAGG&ACUUCUAUUUUUUUUCUUUCC	4	0.999999985978956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN545_c0_g1_568_TPlot.pdf
TRINITY_DN545_c0_g1:586	si_s78	TRINITY_DN545_c0_g1	572	595	586	-26.20	-21.50	0.820610687022901	6	1-15,595-581;16-21,577-572	x-x,580-578[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	AGAAGGUCAAGGGAGAGAAAAGAA&UUUUUUUCUUUCCUU---UCUUCU	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN545_c0_g1_586_TPlot.pdf
TRINITY_DN545_c0_g1:588	si_s76	TRINITY_DN545_c0_g1	577	597	588	-23.60	-18.40	0.779661016949152	6.5	2-18,596-580	1-1,597-597[UP5];19-21,579-577[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GUCAAGGGAGAGAAAAGAAAG&AUUUUUUUUCUUUCCUUUCUU	3	0.99999999986609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN545_c0_g1_588_TPlot.pdf
TRINITY_DN545_c0_g1:591	si_s73	TRINITY_DN545_c0_g1	580	600	591	-24.00	-18.40	0.766666666666667	9	5-21,596-580	1-4,600-597[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGGGAGAGAAAAGAAAGGCA&UCUAUUUUUUUUCUUUCCUUU	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN545_c0_g1_591_TPlot.pdf
TRINITY_DN54605_c0_g2:995	si_s515	TRINITY_DN54605_c0_g2	984	1005	995	-24.80	-17.30	0.69758064516129	8.5	2-9,1004-997;10-19,995-986	1-1,1005-1005[UP5];x-x,996-996[BULt];20-21,985-984[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	AAUUCGGAUUAAUGGAUGUGGU&UCUAUAUUC-UUAAUUCGAAAU	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN54605_c0_g2_995_TPlot.pdf
TRINITY_DN5460_c0_g1:694	si_s664	TRINITY_DN5460_c0_g1	682	703	694	-35.00	-23.20	0.662857142857143	6.5	1-10,703-694;12-13,692-691;16-21,687-682	11-11,693-693[SIL];14-15,690-688[AILt]	((((((...((.((((((((((&)))))))))).))-..))))))	CUGUAAGAAAAAUCGAUCCUCC&GGGGGAUCGAAUU-GAUUAUAG	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s664_TRINITY_DN5460_c0_g1_694_TPlot.pdf
TRINITY_DN54611_c0_g1:1539	si_s87	TRINITY_DN54611_c0_g1	1526	1548	1539	-32.90	-21.90	0.665653495440729	8	1-10,1548-1539;11-16,1536-1531;18-21,1529-1526	x-x,1538-1537[BULt];17-17,1530-1530[SIL]	((((.((((((..((((((((((&))))))))))--)))))).))))	AAGCCGAGGAGCCGAGAAGGGAA&UUCCUUUCUU--CUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN54611_c0_g1_1539_TPlot.pdf
TRINITY_DN54618_c0_g1:2451	si_s696	TRINITY_DN54618_c0_g1	2440	2460	2451	-26.30	-18.40	0.699619771863118	6	1-13,2460-2448;16-20,2445-2441	14-15,2447-2446[SIL];21-21,2440-2440[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	GACUGACCGAUUGACUGAUUA&UAAUUAGUCGAUUUAUUAGUG	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN54618_c0_g1_2451_TPlot.pdf
TRINITY_DN5462_c0_g1:2331	si_a754	TRINITY_DN5462_c0_g1	2321	2340	2331	-34.60	-23.80	0.687861271676301	7.5	2-3,2339-2338;5-11,2336-2330;13-20,2329-2322	1-1,2340-2340[UP5];4-4,2337-2337[SIL];12-12,x-x[BULq];21-21,2321-2321[UP3]	.((((((((-(((((((.((.&.)).))))))).)))))))).	GAAAAGCCC-GAGGAGGGUCG&UGAACCUCCUUUGGGUUUUUG	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN5462_c0_g1_2331_TPlot.pdf
TRINITY_DN5462_c0_g1:2344	si_s77	TRINITY_DN5462_c0_g1	2329	2353	2344	-25.50	-16.90	0.662745098039216	14.5	2-12,2352-2342;13-20,2337-2330	1-1,2353-2353[UP5];x-x,2341-2338[BULt];21-21,2329-2329[UP3]	.((((((((....(((((((((((.&.)))))))))))----)))))))).	CGAGGAGGGUCGUGAAGAGAAAGAG&UUUUUUUUCUUU----CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5462_c0_g1_2344_TPlot.pdf
TRINITY_DN5462_c0_g1:2715	si_a211	TRINITY_DN5462_c0_g1	2704	2724	2715	-26.50	-19.10	0.720754716981132	10	4-9,2721-2716;12-21,2713-2704	1-3,2724-2722[UP5];10-11,2715-2714[SIL]	((((((((((..((((((...&...))))))..))))))))))	AUGAGUUUAAGGAGUUGAAGA&AAAUCGACUAAUUAAACUCAU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a211_TRINITY_DN5462_c0_g1_2715_TPlot.pdf
TRINITY_DN5462_c0_g1:2716	si_a210	TRINITY_DN5462_c0_g1	2705	2725	2716	-26.70	-17.90	0.670411985018727	12	5-10,2721-2716;13-21,2713-2705	1-4,2725-2722[UP5];11-12,2715-2714[SIL]	(((((((((..((((((....&....))))))..)))))))))	UGAGUUUAAGGAGUUGAAGAA&UAAAUCGACUAAUUAAACUCA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a210_TRINITY_DN5462_c0_g1_2716_TPlot.pdf
TRINITY_DN5462_c0_g1:2803	si_a142	TRINITY_DN5462_c0_g1	2792	2812	2803	-23.50	-16.60	0.706382978723404	15	7-19,2806-2794	1-6,2812-2807[UP5];20-21,2793-2792[UP3]	..(((((((((((((......&......)))))))))))))..	GAAGAACGACAGCGAAGAUGA&AAUUAAUCGUUGUUGUUUUAA	4	0.999995171230596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5462_c0_g1_2803_TPlot.pdf
TRINITY_DN54639_c0_g1:1561	si_s524	TRINITY_DN54639_c0_g1	1548	1570	1561	-23.90	-16.00	0.669456066945607	7	3-16,1568-1555;17-21,1552-1548	1-2,1570-1569[UP5];x-x,1554-1553[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	UCAAGAUGAUGAUUUUGAAUUCA&UUAAUUCGAAAUCAUU--UUUGA	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN54639_c0_g1_1561_TPlot.pdf
TRINITY_DN5463_c1_g1:527	si_a20	TRINITY_DN5463_c1_g1	516	536	527	-26.70	-19.70	0.737827715355805	7	1-5,536-532;7-14,530-523;16-20,521-517	6-6,531-531[SIL];15-15,522-522[SIL];21-21,516-516[UP3]	.(((((.((((((((.(((((&))))).)))))))).))))).	AGGAGCCGGAAAUAAUUGGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN5463_c1_g1_527_TPlot.pdf
TRINITY_DN5464_c0_g1:744	si_a68	TRINITY_DN5464_c0_g1	733	753	744	-25.40	-18.30	0.720472440944882	8	1-11,753-743;13-16,741-738;18-20,736-734	12-12,742-742[SIL];17-17,737-737[SIL];21-21,733-733[UP3]	.(((.((((.(((((((((((&))))))))))).)))).))).	CGAGCGACAUUUUGGAGGGAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5464_c0_g1_744_TPlot.pdf
TRINITY_DN54650_c0_g1:141	si_a469	TRINITY_DN54650_c0_g1	129	150	141	-21.10	-13.90	0.658767772511848	10.5	5-12,146-139;13-21,137-129	1-4,150-147[UP5];x-x,138-138[BULt]	(((((((((.((((((((....&....))))))))-)))))))))	AUAACAAUGUAUUACAUGGUCC&AUAAUAUGUAAU-UAUUGUUAU	4	0.99999927711518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN54650_c0_g1_141_TPlot.pdf
TRINITY_DN54650_c0_g1:389	si_a635	TRINITY_DN54650_c0_g1	377	398	389	-26.10	-17.40	0.666666666666667	6	2-13,397-386;15-16,384-383;17-20,381-378	1-1,398-398[UP5];14-14,385-385[SIL];x-x,382-382[BULt];21-21,377-377[UP3]	.((((.((.((((((((((((.&.)))))))))))).))-)))).	CUUGCAUCUGAAAAAUCGGCAA&AUGUCGAUUUUUUUGA-GUAAU	0	0.422372362444918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN54650_c0_g1_389_TPlot.pdf
TRINITY_DN5467_c0_g3:763	si_a127	TRINITY_DN5467_c0_g3	752	772	763	-23.10	-17.10	0.74025974025974	11	5-18,768-755	1-4,772-769[UP5];19-21,754-752[UP3]	...((((((((((((((....&....))))))))))))))...	AUUGUUGCUAUUGCUAUUACA&UUUUAUAGCAAUAGUAAUUAA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN5467_c0_g3_763_TPlot.pdf
TRINITY_DN5467_c0_g3:764	si_a126	TRINITY_DN5467_c0_g3	753	773	764	-24.70	-17.10	0.692307692307692	12	6-19,768-755	1-5,773-769[UP5];20-21,754-753[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGUUGCUAUUGCUAUUACAA&GUUUUAUAGCAAUAGUAAUUA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN5467_c0_g3_764_TPlot.pdf
TRINITY_DN5467_c0_g3:765	si_a125	TRINITY_DN5467_c0_g3	754	774	765	-25.00	-17.10	0.684	13	7-20,768-755	1-6,774-769[UP5];21-21,754-754[UP3]	.((((((((((((((......&......)))))))))))))).	UGUUGCUAUUGCUAUUACAAG&UGUUUUAUAGCAAUAGUAAUU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN5467_c0_g3_765_TPlot.pdf
TRINITY_DN5467_c0_g3:766	si_a124	TRINITY_DN5467_c0_g3	755	773	766	-25.10	-18.00	0.717131474103586	7	1-4,773-770;8-21,768-755	5-7,769-769[AILq]	((((((((((((((.--((((&))))...))))))))))))))	GUUGCUAUUGCUAUU--ACAA&UUGUUUUAUAGCAAUAGUAAU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN5467_c0_g3_766_TPlot.pdf
TRINITY_DN5467_c0_g3:767	si_a123	TRINITY_DN5467_c0_g3	756	774	767	-26.60	-19.20	0.721804511278195	6.5	1-5,774-770;9-21,768-756	6-8,769-769[AILq]	(((((((((((((.--(((((&)))))...)))))))))))))	UUGCUAUUGCUAUU--ACAAG&CUUGUUUUAUAGCAAUAGUAA	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN5467_c0_g3_767_TPlot.pdf
TRINITY_DN5467_c0_g3:768	si_a122	TRINITY_DN5467_c0_g3	757	775	768	-29.00	-20.50	0.706896551724138	7	1-6,775-770;10-21,768-757	7-9,769-769[AILq]	((((((((((((.--((((((&))))))...))))))))))))	UGCUAUUGCUAUU--ACAAGU&GCUUGUUUUAUAGCAAUAGUA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN5467_c0_g3_768_TPlot.pdf
TRINITY_DN5467_c0_g3:769	si_a121	TRINITY_DN5467_c0_g3	758	776	769	-29.30	-19.50	0.665529010238908	8.5	2-7,775-770;11-21,768-758	1-1,776-776[UP5];8-10,769-769[AILq]	(((((((((((.--((((((.&.))))))...)))))))))))	GCUAUUGCUAUU--ACAAGUA&AGCUUGUUUUAUAGCAAUAGU	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN5467_c0_g3_769_TPlot.pdf
TRINITY_DN54680_c0_g1:558	si_s96	TRINITY_DN54680_c0_g1	547	567	558	-37.20	-25.80	0.693548387096774	7	4-12,564-556;14-20,554-548	1-3,567-565[UP5];13-13,555-555[SIL];21-21,547-547[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	ACCAAUCCAAAGCGAAGAUCC&UCUUCUUCGCUUCGGAUUGGA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN54680_c0_g1_558_TPlot.pdf
TRINITY_DN5468_c0_g1:2879	si_s203	TRINITY_DN5468_c0_g1	2867	2888	2879	-35.50	-23.92	0.673802816901409	7.5	1-12,2888-2877;16-21,2872-2867	13-15,2876-2873[AILt]	((((((....((((((((((((&))))))))))))-...))))))	GAACGCCCCGUGGUAUGUUCCA&UGGAAUGUACCA-GUUGUGUUC	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN5468_c0_g1_2879_TPlot.pdf
TRINITY_DN54694_c0_g1:346	si_a317	TRINITY_DN54694_c0_g1	331	355	346	-24.30	-16.60	0.683127572016461	12	1-10,355-346;11-18,341-334	x-x,345-342[BULt];19-21,333-331[UP3]	...((((((((....((((((((((&))))))))))----))))))))...	UGCAGGAAUCACUUUUGGAUAAAUC&GAUUUAUCCA----UGAUUUUUUUA	2	0.999783623131415	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN54694_c0_g1_346_TPlot.pdf
TRINITY_DN54694_c0_g1:66	si_a783	TRINITY_DN54694_c0_g1	55	79	66	-24.70	-20.00	0.809716599190283	9.5	1-9,79-71;10-21,66-55	x-x,70-67[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	AAAUAGAAGGAUUGGAAGAAGAGUU&AACUCUUCU----AUUUUUCUAUUU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN54694_c0_g1_66_TPlot.pdf
TRINITY_DN546_c0_g1:3854	si_a532	TRINITY_DN546_c0_g1	3841	3863	3854	-40.10	-26.90	0.670822942643391	11	1-11,3863-3853;13-18,3849-3844	12-12,3852-3850[AILt];19-21,3843-3841[UP3]	...((((((...(((((((((((&)))))))))))--.))))))...	CAAGGCCGAAUGUGCUCGCGUGU&ACACGCGAGCG--AUCGGUUCAA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN546_c0_g1_3854_TPlot.pdf
TRINITY_DN546_c0_g1:4271	si_a842	TRINITY_DN546_c0_g1	4260	4280	4271	-29.30	-19.90	0.679180887372014	11	5-12,4276-4269;15-19,4266-4262	1-4,4280-4277[UP5];13-14,4268-4267[SIL];20-21,4261-4260[UP3]	..(((((..((((((((....&....))))))))..)))))..	AGCAAGUGUGCAACUUCACGC&AAUAGAAGUUGCUAACUUGAA	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a842_TRINITY_DN546_c0_g1_4271_TPlot.pdf
TRINITY_DN546_c0_g2:2033	si_a14	TRINITY_DN546_c0_g2	2022	2043	2033	-26.50	-17.70	0.667924528301887	11.5	1-9,2043-2035;10-14,2033-2029	x-x,2034-2034[BULt];15-21,2028-2022[UP3]	.......(((((.(((((((((&)))))))))-))))).......	UCAUGGCGAGUGCGGCUUUCUC&GAGAAAGCC-UAUUUAUUUUUA	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a14_TRINITY_DN546_c0_g2_2033_TPlot.pdf
TRINITY_DN54702_c0_g1:378	si_a393	TRINITY_DN54702_c0_g1	366	387	378	-22.70	-15.20	0.669603524229075	5	3-16,385-372;17-21,370-366	1-2,387-386[UP5];x-x,371-371[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AAAACAAAUUUUAUAUUCUUUG&UUAAGAAUAUAGAAUU-GUUUU	0	0.130279055121245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN54702_c0_g1_378_TPlot.pdf
TRINITY_DN54709_c0_g1:31	si_a142	TRINITY_DN54709_c0_g1	19	40	31	-23.50	-15.50	0.659574468085106	7	2-13,39-28;15-19,25-21	1-1,40-40[UP5];14-14,27-26[AILt];20-21,20-19[UP3]	..(((((..((((((((((((.&.))))))))))))-.)))))..	AAAAAACUUACAAUGAUUGAUG&AAUUAAUCGUUGU-UGUUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN54709_c0_g1_31_TPlot.pdf
TRINITY_DN54712_c0_g1:534	si_s898	TRINITY_DN54712_c0_g1	521	543	534	-30.70	-20.58	0.670358306188925	9.5	1-13,543-531;16-18,526-524	14-15,530-527[AILt];19-21,523-521[UP3]	...(((....(((((((((((((&)))))))))))))--..)))...	GAAGAAUCCGUGGAGAGAAGGCU&GGCUUUCUCUUCA--AUUUCAAU	3	0.999999694312056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN54712_c0_g1_534_TPlot.pdf
TRINITY_DN54712_c0_g1:536	si_s896	TRINITY_DN54712_c0_g1	523	545	536	-31.60	-22.78	0.720886075949367	7.5	1-15,545-531;18-20,526-524	16-17,530-527[AILt];21-21,523-523[UP3]	.(((....(((((((((((((((&)))))))))))))))--..))).	AGAAUCCGUGGAGAGAAGGCUUA&UAGGCUUUCUCUUCA--AUUUCA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN54712_c0_g1_536_TPlot.pdf
TRINITY_DN54712_c0_g1:539	si_s893	TRINITY_DN54712_c0_g1	528	548	539	-29.10	-21.40	0.735395189003436	10.5	4-18,545-531	1-3,548-546[UP5];19-21,530-528[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCGUGGAGAGAAGGCUUAGAU&AAAUAGGCUUUCUCUUCAAUU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN54712_c0_g1_539_TPlot.pdf
TRINITY_DN54712_c0_g1:541	si_s891	TRINITY_DN54712_c0_g1	530	550	541	-29.60	-21.40	0.722972972972973	12.5	6-20,545-531	1-5,550-546[UP5];21-21,530-530[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUGGAGAGAAGGCUUAGAUAG&AUAAAUAGGCUUUCUCUUCAA	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN54712_c0_g1_541_TPlot.pdf
TRINITY_DN54712_c0_g1:543	si_s889	TRINITY_DN54712_c0_g1	532	552	543	-28.80	-19.80	0.6875	15	8-21,545-532	1-7,552-546[UP5]	((((((((((((((.......&.......))))))))))))))	GGAGAGAAGGCUUAGAUAGAU&AAAUAAAUAGGCUUUCUCUUC	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN54712_c0_g1_543_TPlot.pdf
TRINITY_DN5471_c0_g2:469	si_s77	TRINITY_DN5471_c0_g2	459	478	469	-25.50	-18.40	0.72156862745098	3.5	1-17,478-462;20-21,460-459	18-19,461-461[AILq]	((.-(((((((((((((((((&)))))))))))))))))..))	GAU-AAGGGAAAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5471_c0_g2_469_TPlot.pdf
TRINITY_DN5471_c0_g2:470	si_s76	TRINITY_DN5471_c0_g2	459	479	470	-23.60	-18.20	0.771186440677966	5.5	2-18,478-462	1-1,479-479[UP5];19-21,461-459[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GAUAAGGGAAAGAAGAAAAAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999998001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5471_c0_g2_470_TPlot.pdf
TRINITY_DN5474_c0_g2:2720	si_s3	TRINITY_DN5474_c0_g2	2708	2729	2720	-21.20	-14.90	0.702830188679245	8.5	3-10,2727-2720;12-21,2717-2708	1-2,2729-2728[UP5];11-11,2719-2718[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	GGUAAUAAUAUUGUAAUAUGUU&UUUAUAUUAC-UUAUUAUUACU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN5474_c0_g2_2720_TPlot.pdf
TRINITY_DN5474_c0_g2:2971	si_a413	TRINITY_DN5474_c0_g2	2959	2980	2971	-18.40	-12.00	0.652173913043478	5.5	2-13,2979-2968;14-20,2966-2960	1-1,2980-2980[UP5];x-x,2967-2967[BULt];21-21,2959-2959[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	UUAUUUGUGUUAAAUAUGAAUU&UGUUUAUAUUUAA-AUAAAUAU	4	0.999999540968882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN5474_c0_g2_2971_TPlot.pdf
TRINITY_DN54753_c0_g1:342	si_s90	TRINITY_DN54753_c0_g1	331	351	342	-35.30	-24.50	0.694050991501416	8.5	3-11,349-341;13-20,339-332	1-2,351-350[UP5];12-12,340-340[SIL];21-21,331-331[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	ACGAAGCGGUGAAGAAGGGCA&CUUUCUUCUUCUUCGCUUCGG	3	0.999999899600981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN54753_c0_g1_342_TPlot.pdf
TRINITY_DN54753_c0_g1:346	si_s86	TRINITY_DN54753_c0_g1	335	357	346	-32.90	-21.90	0.665653495440729	9.5	3-7,355-351;8-15,348-341;17-21,339-335	1-2,357-356[UP5];x-x,350-349[BULt];16-16,340-340[SIL]	(((((.((((((((..(((((..&..)))))--)))))))).)))))	AGCGGUGAAGAAGGGCAAGGAUC&UUUCCUU--UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN54753_c0_g1_346_TPlot.pdf
TRINITY_DN54753_c0_g1:404	si_a594	TRINITY_DN54753_c0_g1	392	413	404	-32.30	-21.30	0.659442724458204	8	1-2,413-412;4-4,410-410;7-15,407-399;16-21,397-392	3-3,411-411[SIL];5-6,409-408[SIL];x-x,398-398[BULt]	((((((.(((((((((..(.((&)).)..)))))))))-))))))	GUUGCGCAAGAUUCUGGACGUC&GAAGGACAGAAUUUU-CGCAAU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN54753_c0_g1_404_TPlot.pdf
TRINITY_DN54753_c0_g1:444	si_s295	TRINITY_DN54753_c0_g1	430	453	444	-32.20	-21.10	0.65527950310559	10	1-13,453-441;14-17,437-434	x-x,440-438[BULt];18-21,433-430[UP3]	....((((...(((((((((((((&)))))))))))))---))))....	ACGACGCAAAUAUUCCGGUUGACU&AGUCGAUUGGAAU---UGCGAAAA	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN54753_c0_g1_444_TPlot.pdf
TRINITY_DN5475_c0_g1:162	si_s526	TRINITY_DN5475_c0_g1	149	171	162	-25.60	-17.06	0.66640625	10.5	3-14,169-158;18-21,152-149	1-2,171-170[UP5];15-17,157-153[AILt]	((((.....((((((((((((..&..))))))))))))--...))))	GAUCUCGUUGAUGGUUUCGAGGG&AAUUCGAAAUCAUU--UUUGAUC	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN5475_c0_g1_162_TPlot.pdf
TRINITY_DN5475_c0_g2:1198	si_s75	TRINITY_DN5475_c0_g2	1187	1207	1198	-24.00	-17.00	0.708333333333333	10	3-17,1205-1191	1-2,1207-1206[UP5];18-21,1190-1187[UP3]	....(((((((((((((((..&..)))))))))))))))....	CACCAGGAAAGAGAAGAGAGA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5475_c0_g2_1198_TPlot.pdf
TRINITY_DN5475_c0_g2:1200	si_s73	TRINITY_DN5475_c0_g2	1189	1210	1200	-24.00	-17.20	0.716666666666667	11	1-2,1210-1209;5-19,1205-1191	3-4,1208-1206[AILt];20-21,1190-1189[UP3]	..(((((((((((((((...((&))-..)))))))))))))))..	CCAGGAAAGAGAAGAGAGACGA&UC-UAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5475_c0_g2_1200_TPlot.pdf
TRINITY_DN5475_c0_g2:1384	si_a630	TRINITY_DN5475_c0_g2	1373	1394	1384	-25.80	-16.90	0.655038759689922	12.5	1-7,1394-1388;8-11,1386-1383;14-20,1380-1374	x-x,1387-1387[BULt];12-13,1382-1381[SIL];21-21,1373-1373[UP3]	.(((((((..((((.(((((((&)))))))-))))..))))))).	CCGAAGGAUGCGGCGGUGGUGC&GUAUUAU-GUCGAUUUUUUUGA	4	0.999999989922738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN5475_c0_g2_1384_TPlot.pdf
TRINITY_DN5475_c0_g2:1422	si_s371	TRINITY_DN5475_c0_g2	1411	1431	1422	-43.20	-28.20	0.652777777777778	10.5	5-12,1427-1420;14-20,1418-1412	1-4,1431-1428[UP5];13-13,1419-1419[SIL];21-21,1411-1411[UP3]	.(((((((.((((((((....&....)))))))).))))))).	UGGGCACGAGGGCGAUCUGCG&AACCGAUCGCUCGCGUGUCCG	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN5475_c0_g2_1422_TPlot.pdf
TRINITY_DN5475_c0_g2:1707	si_a821	TRINITY_DN5475_c0_g2	1696	1716	1707	-26.20	-17.60	0.67175572519084	6.5	1-6,1716-1711;9-20,1708-1697	7-8,1710-1709[SIL];21-21,1696-1696[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CUUUUUUUUUCCUGGCUUUUU&AAGAAGAAAGGAAAGAAAAAA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN5475_c0_g2_1707_TPlot.pdf
TRINITY_DN5475_c0_g3:1087	si_s609	TRINITY_DN5475_c0_g3	1076	1094	1087	-27.70	-18.44	0.665703971119134	11	1-8,1094-1087;15-21,1082-1076	9-14,1086-1083[AILq]	(((((((....--((((((((&))))))))......)))))))	GCUUGGAGAAC--AAAGGUUC&GAAUCUUUUUUAAAUCCAAGC	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN5475_c0_g3_1087_TPlot.pdf
TRINITY_DN5475_c0_g3:847	si_a495	TRINITY_DN5475_c0_g3	836	856	847	-31.90	-21.00	0.658307210031348	12.5	4-8,853-849;11-20,846-837	1-3,856-854[UP5];9-10,848-847[SIL];21-21,836-836[UP3]	.((((((((((..(((((...&...)))))..)))))))))).	UGAAGACGGGAUUCGGCACGG&AUAUGUCGUUUUUCGUCUUCC	4	0.99999999996619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5475_c0_g3_847_TPlot.pdf
TRINITY_DN5475_c0_g3:848	si_a494	TRINITY_DN5475_c0_g3	837	857	848	-29.50	-21.00	0.711864406779661	13	5-9,853-849;12-21,846-837	1-4,857-854[UP5];10-11,848-847[SIL]	((((((((((..(((((....&....)))))..))))))))))	GAAGACGGGAUUCGGCACGGG&AAUAUGUCGUUUUUCGUCUUC	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN5475_c0_g3_848_TPlot.pdf
TRINITY_DN54766_c0_g1:331	si_s70	TRINITY_DN54766_c0_g1	320	342	331	-25.80	-17.46	0.676744186046512	13.5	2-6,341-337;10-21,331-320	1-1,342-342[UP5];7-9,336-332[AILt]	((((((((((((.....(((((.&.)))))--...))))))))))))	GGAAAGGAAAAGUUAACGGAAGG&ACUUCU--AUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN54766_c0_g1_331_TPlot.pdf
TRINITY_DN54766_c0_g1:949	si_s160	TRINITY_DN54766_c0_g1	938	958	949	-40.60	-26.80	0.660098522167488	7	1-2,958-957;4-9,955-950;11-12,948-947;14-19,945-940	3-3,956-956[SIL];10-10,949-949[SIL];13-13,946-946[SIL];20-21,939-938[UP3]	..((((((.((.((((((.((&)).)))))).)).))))))..	GAUACCCCCGGGCAUGAAGCU&AGGUUCAUGGCCAGGGGUAAA	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN54766_c0_g1_949_TPlot.pdf
TRINITY_DN5476_c0_g1:1397	si_s680	TRINITY_DN5476_c0_g1	1385	1406	1397	-25.10	-16.90	0.673306772908366	8	2-12,1405-1395;13-17,1393-1389	1-1,1406-1406[UP5];x-x,1394-1394[BULt];18-21,1388-1385[UP3]	....(((((.(((((((((((.&.)))))))))))-)))))....	UCAAAGGCUGCAUGUUUCUAUU&UAUAGAAACAUG-AGUUUAAUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN5476_c0_g1_1397_TPlot.pdf
TRINITY_DN54780_c0_g1:27	si_a117	TRINITY_DN54780_c0_g1	16	36	27	-31.00	-21.40	0.690322580645161	9.5	3-17,34-20;19-19,18-18	1-2,36-35[UP5];18-18,19-19[SIL];20-21,17-16[UP3]	..(.(((((((((((((((..&..))))))))))))))).)..	AAGGUAUGAGACGAGUUCGAG&UACGAGCUUGUUUUAUAGCAA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN54780_c0_g1_27_TPlot.pdf
TRINITY_DN54780_c0_g1:29	si_a115	TRINITY_DN54780_c0_g1	18	38	29	-30.40	-20.90	0.6875	11	5-19,34-20;21-21,18-18	1-4,38-35[UP5];20-20,19-19[SIL]	(.(((((((((((((((....&....))))))))))))))).)	GGUAUGAGACGAGUUCGAGAU&AAUACGAGCUUGUUUUAUAGC	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN54780_c0_g1_29_TPlot.pdf
TRINITY_DN54780_c0_g1:30	si_a114	TRINITY_DN54780_c0_g1	19	39	30	-27.90	-18.80	0.673835125448029	13	6-20,34-20	1-5,39-35[UP5];21-21,19-19[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUAUGAGACGAGUUCGAGAUG&AAAUACGAGCUUGUUUUAUAG	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN54780_c0_g1_30_TPlot.pdf
TRINITY_DN54780_c0_g1:31	si_a113	TRINITY_DN54780_c0_g1	20	40	31	-26.20	-18.60	0.709923664122137	13.5	7-21,34-20	1-6,40-35[UP5]	(((((((((((((((......&......)))))))))))))))	UAUGAGACGAGUUCGAGAUGU&AAAAUACGAGCUUGUUUUAUA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN54780_c0_g1_31_TPlot.pdf
TRINITY_DN54780_c0_g1:524	si_s77	TRINITY_DN54780_c0_g1	513	533	524	-25.50	-17.20	0.674509803921569	5	2-8,532-526;10-20,524-514	1-1,533-533[UP5];9-9,525-525[SIL];21-21,513-513[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	AGAGAGAGGAAACAAAAAAAU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN54780_c0_g1_524_TPlot.pdf
TRINITY_DN54780_c0_g1:525	si_s76	TRINITY_DN54780_c0_g1	514	534	525	-23.60	-17.00	0.720338983050847	6	3-9,532-526;11-21,524-514	1-2,534-533[UP5];10-10,525-525[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GAGAGAGGAAACAAAAAAAUU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN54780_c0_g1_525_TPlot.pdf
TRINITY_DN54780_c0_g1:526	si_s75	TRINITY_DN54780_c0_g1	515	535	526	-24.00	-15.90	0.6625	7.5	4-10,532-526;12-21,524-515	1-3,535-533[UP5];11-11,525-525[SIL]	((((((((((.(((((((...&...))))))).))))))))))	AGAGAGGAAACAAAAAAAUUG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN54780_c0_g1_526_TPlot.pdf
TRINITY_DN54780_c0_g1:527	si_s74	TRINITY_DN54780_c0_g1	516	536	527	-25.00	-16.70	0.668	5.5	1-3,536-534;5-11,532-526;13-21,524-516	4-4,533-533[SIL];12-12,525-525[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	GAGAGGAAACAAAAAAAUUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN54780_c0_g1_527_TPlot.pdf
TRINITY_DN54780_c0_g1:740	si_a862	TRINITY_DN54780_c0_g1	727	749	740	-22.70	-15.80	0.696035242290749	7	3-15,747-735;16-20,732-728	1-2,749-748[UP5];x-x,734-733[BULt];21-21,727-727[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	AAAAUCAGUUUAAUAGUUGGAGG&AAUCCAAUUAUUAAA--GAUUUA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN54780_c0_g1_740_TPlot.pdf
TRINITY_DN54780_c0_g1:741	si_a861	TRINITY_DN54780_c0_g1	728	750	741	-22.30	-15.50	0.695067264573991	8	4-16,747-735;17-21,732-728	1-3,750-748[UP5];x-x,734-733[BULt]	(((((..(((((((((((((...&...)))))))))))))--)))))	AAAUCAGUUUAAUAGUUGGAGGU&AAAUCCAAUUAUUAAA--GAUUU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN54780_c0_g1_741_TPlot.pdf
TRINITY_DN54780_c0_g1:742	si_a860	TRINITY_DN54780_c0_g1	729	751	742	-24.30	-17.10	0.703703703703704	7	1-2,751-750;5-17,747-735;18-21,732-729	3-4,749-748[SIL];x-x,734-733[BULt]	((((..(((((((((((((..((&))..)))))))))))))--))))	AAUCAGUUUAAUAGUUGGAGGUC&GAAAUCCAAUUAUUAAA--GAUU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN54780_c0_g1_742_TPlot.pdf
TRINITY_DN54780_c0_g1:743	si_a859	TRINITY_DN54780_c0_g1	730	752	743	-25.00	-17.00	0.68	7	1-3,752-750;6-18,747-735;19-21,732-730	4-5,749-748[SIL];x-x,734-733[BULt]	(((..(((((((((((((..(((&)))..)))))))))))))--)))	AUCAGUUUAAUAGUUGGAGGUCA&UGAAAUCCAAUUAUUAAA--GAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a859_TRINITY_DN54780_c0_g1_743_TPlot.pdf
TRINITY_DN54780_c0_g1:744	si_a858	TRINITY_DN54780_c0_g1	733	753	744	-24.90	-17.10	0.686746987951807	8	2-4,752-750;7-19,747-735	1-1,753-753[UP5];5-6,749-748[SIL];20-21,734-733[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	AGUUUAAUAGUUGGAGGUCAU&UUGAAAUCCAAUUAUUAAAGA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a858_TRINITY_DN54780_c0_g1_744_TPlot.pdf
TRINITY_DN54780_c0_g1:746	si_a856	TRINITY_DN54780_c0_g1	735	755	746	-24.70	-16.90	0.684210526315789	9.5	4-6,752-750;9-21,747-735	1-3,755-753[UP5];7-8,749-748[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	UUUAAUAGUUGGAGGUCAUUC&ACUUGAAAUCCAAUUAUUAAA	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN54780_c0_g1_746_TPlot.pdf
TRINITY_DN54788_c0_g1:464	si_s86	TRINITY_DN54788_c0_g1	449	473	464	-32.90	-21.40	0.650455927051672	15.5	5-12,469-462;13-21,457-449	1-4,473-470[UP5];x-x,461-458[BULt]	(((((((((....((((((((....&....))))))))----)))))))))	AGCGAAGAGAAUUGAAGAAAGAAAA&UUUCCUUUCUUC----UUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN54788_c0_g1_464_TPlot.pdf
TRINITY_DN5478_c0_g1:780	si_s72	TRINITY_DN5478_c0_g1	761	789	780	-24.10	-15.90	0.659751037344398	12	1-14,789-776;15-19,767-763	x-x,775-768[BULt];20-21,762-761[UP3]	..(((((........((((((((((((((&))))))))))))))--------)))))..	UUGGAAAGCAUAAUCGAGAAGAAAUAGAA&UUCUAUUUUUUUUC--------UUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5478_c0_g1_780_TPlot.pdf
TRINITY_DN5478_c0_g1:883	si_s50	TRINITY_DN5478_c0_g1	871	892	883	-29.00	-18.90	0.651724137931034	7.5	1-13,892-880;15-19,877-873	14-14,879-878[AILt];20-21,872-871[UP3]	..(((((..(((((((((((((&)))))))))))))-.)))))..	ACGUUAAAAUUGGAGUCCAGUU&AAUUGGAUUUCAA-GUUAGCAA	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN5478_c0_g1_883_TPlot.pdf
TRINITY_DN5478_c0_g1:886	si_s47	TRINITY_DN5478_c0_g1	874	895	886	-26.30	-17.60	0.669201520912548	7	2-16,894-880;18-21,877-874	1-1,895-895[UP5];17-17,879-878[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	UUAAAAUUGGAGUCCAGUUGUA&AAUAAUUGGAUUUCAA-GUUAG	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN5478_c0_g1_886_TPlot.pdf
TRINITY_DN5478_c0_g1:887	si_s46	TRINITY_DN5478_c0_g1	876	896	887	-25.00	-17.60	0.704	10.5	3-17,894-880	1-2,896-895[UP5];18-21,879-876[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAAUUGGAGUCCAGUUGUAG&UAAUAAUUGGAUUUCAAGUUA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN5478_c0_g1_887_TPlot.pdf
TRINITY_DN5478_c0_g1:890	si_s43	TRINITY_DN5478_c0_g1	879	899	890	-25.50	-17.60	0.690196078431373	13	6-20,894-880	1-5,899-895[UP5];21-21,879-879[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUUGGAGUCCAGUUGUAGACA&CUUUAAUAAUUGGAUUUCAAG	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN5478_c0_g1_890_TPlot.pdf
TRINITY_DN5478_c0_g1:892	si_s41	TRINITY_DN5478_c0_g1	881	901	892	-25.00	-16.60	0.664	16	8-21,894-881	1-7,901-895[UP5]	((((((((((((((.......&.......))))))))))))))	UGGAGUCCAGUUGUAGACAAA&AUCUUUAAUAAUUGGAUUUCA	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN5478_c0_g1_892_TPlot.pdf
TRINITY_DN5478_c0_g1:984	si_s40	TRINITY_DN5478_c0_g1	973	993	984	-24.30	-18.10	0.744855967078189	4.5	3-14,991-980;16-21,978-973	1-2,993-992[UP5];15-15,979-979[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GAAAUUGAAUUAUUAAAGAAA&AAUCUUUAAUAAUUGGAUUUC	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN5478_c0_g1_984_TPlot.pdf
TRINITY_DN547_c0_g1:5311	si_s309	TRINITY_DN547_c0_g1	5300	5319	5311	-33.80	-22.62	0.669230769230769	12	1-3,5319-5317;8-19,5313-5302	4-7,5316-5314[AILq];20-21,5301-5300[UP3]	..((((((((((((...-(((&)))....))))))))))))..	GCGGAAGGGCGGAAGAG-CGC&GCGAAAAUUCUGUCCUUCUUG	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN547_c0_g1_5311_TPlot.pdf
TRINITY_DN547_c0_g1:5313	si_s307	TRINITY_DN547_c0_g1	5302	5321	5313	-32.90	-22.82	0.693617021276596	12.5	3-5,5319-5317;10-21,5313-5302	1-2,5321-5320[UP5];6-9,5316-5314[AILq]	((((((((((((...-(((..&..)))....))))))))))))	GGAAGGGCGGAAGAG-CGCUG&UUGCGAAAAUUCUGUCCUUCU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN547_c0_g1_5313_TPlot.pdf
TRINITY_DN547_c0_g1:6470	si_s621	TRINITY_DN547_c0_g1	6459	6480	6470	-32.50	-21.70	0.667692307692308	12.5	3-5,6478-6476;8-20,6472-6460	1-2,6480-6479[UP5];6-7,6475-6473[AILt];21-21,6459-6459[UP3]	.(((((((((((((...(((..&..)))-..))))))))))))).	AGCGAGGAGAUCGUCACGGAGG&AAUCC-AAGCGAUCUUUUCGUA	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN547_c0_g1_6470_TPlot.pdf
TRINITY_DN547_c0_g1:871	si_s716	TRINITY_DN547_c0_g1	860	880	871	-31.70	-24.40	0.769716088328076	5.5	1-4,880-877;6-9,875-872;11-20,870-861	5-5,876-876[SIL];10-10,871-871[SIL];21-21,860-860[UP3]	.((((((((((.((((.((((&)))).)))).)))))))))).	UGAUGAUAUCUCUCCCCGUUC&GAACAGGGAAAGAUAUUAUCU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s716_TRINITY_DN547_c0_g1_871_TPlot.pdf
TRINITY_DN54801_c0_g1:500	si_s896	TRINITY_DN54801_c0_g1	489	509	500	-31.60	-20.80	0.658227848101266	10.5	3-14,507-496	1-2,509-508[UP5];15-21,495-489[UP3]	.......((((((((((((..&..)))))))))))).......	GUUUGCAGGAGAGAAAGCCCA&UAGGCUUUCUCUUCAAUUUCA	4	0.999997928537389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN54801_c0_g1_500_TPlot.pdf
TRINITY_DN54809_c0_g1:918	si_a451	TRINITY_DN54809_c0_g1	907	927	918	-23.60	-15.50	0.656779661016949	10	3-16,925-912	1-2,927-926[UP5];17-21,911-907[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUGAGGUAGCAACAAUUGUAG&AGAUAAUUGUUGUUAUAUAUA	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN54809_c0_g1_918_TPlot.pdf
TRINITY_DN5480_c0_g1:2272	si_a407	TRINITY_DN5480_c0_g1	2261	2281	2272	-19.80	-16.60	0.838383838383838	8.5	1-17,2281-2265	18-21,2264-2261[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUCAGAAUGUGGACGAAACAG&UUGUUUUGUUUAUAUUUAAAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5480_c0_g1_2272_TPlot.pdf
TRINITY_DN5480_c0_g1:2276	si_a403	TRINITY_DN5480_c0_g1	2265	2285	2276	-22.00	-16.10	0.731818181818182	11	5-21,2281-2265	1-4,2285-2282[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAUGUGGACGAAACAGCUGA&AGAAUUGUUUUGUUUAUAUUU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5480_c0_g1_2276_TPlot.pdf
TRINITY_DN5480_c0_g1:2355	si_a573	TRINITY_DN5480_c0_g1	2344	2365	2355	-28.70	-18.90	0.658536585365854	11.5	5-9,2361-2357;10-20,2355-2345	1-4,2365-2362[UP5];x-x,2356-2356[BULt];21-21,2344-2344[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	CUGUUACGAGCAUUACGAAAAU&UGAAUCGUA-UGUUUGUAACAA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN5480_c0_g1_2355_TPlot.pdf
TRINITY_DN5480_c0_g1:2498	si_s82	TRINITY_DN5480_c0_g1	2487	2509	2498	-28.90	-20.50	0.709342560553633	6.5	1-6,2509-2504;7-17,2501-2491;19-21,2489-2487	x-x,2503-2502[BULt];18-18,2490-2490[SIL]	(((.(((((((((((..((((((&))))))--))))))))))).)))	AGGCGGAGGAAAGGAUCAAGAAA&UUUCUU--UCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5480_c0_g1_2498_TPlot.pdf
TRINITY_DN5480_c0_g1:2500	si_s80	TRINITY_DN5480_c0_g1	2489	2511	2500	-28.20	-20.20	0.716312056737589	7.5	1-8,2511-2504;9-19,2501-2491	x-x,2503-2502[BULt];20-21,2490-2489[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	GCGGAGGAAAGGAUCAAGAAAAG&UUUUUCUU--UCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5480_c0_g1_2500_TPlot.pdf
TRINITY_DN5480_c0_g1:2504	si_s78	TRINITY_DN5480_c0_g1	2491	2513	2504	-26.20	-20.80	0.793893129770992	8	2-10,2512-2504;11-21,2501-2491	1-1,2513-2513[UP5];x-x,2503-2502[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	GGAGGAAAGGAUCAAGAAAAGGC&UUUUUUUCUU--UCCUUUCUUCU	4	0.999995906285367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5480_c0_g1_2504_TPlot.pdf
TRINITY_DN5480_c0_g1:2505	si_s77	TRINITY_DN5480_c0_g1	2492	2514	2505	-25.50	-19.60	0.768627450980392	9.5	3-11,2512-2504;12-21,2501-2492	1-2,2514-2513[UP5];x-x,2503-2502[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	GAGGAAAGGAUCAAGAAAAGGCG&UUUUUUUUCUU--UCCUUUCUUC	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5480_c0_g1_2505_TPlot.pdf
TRINITY_DN5480_c0_g1:2506	si_s76	TRINITY_DN5480_c0_g1	2493	2515	2506	-23.60	-16.40	0.694915254237288	11.5	4-12,2512-2504;13-21,2501-2493	1-3,2515-2513[UP5];x-x,2503-2502[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	AGGAAAGGAUCAAGAAAAGGCGG&AUUUUUUUUCUU--UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5480_c0_g1_2506_TPlot.pdf
TRINITY_DN54814_c0_g1:825	si_a122	TRINITY_DN54814_c0_g1	814	834	825	-29.00	-18.88	0.651034482758621	8.5	1-10,834-825;14-20,821-815	11-13,824-822[SIL];21-21,814-814[UP3]	.(((((((...((((((((((&))))))))))...))))))).	GGCUGUUGAAUUAAAGCAAGU&GCUUGUUUUAUAGCAAUAGUA	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN54814_c0_g1_825_TPlot.pdf
TRINITY_DN54815_c0_g1:273	si_a757	TRINITY_DN54815_c0_g1	259	282	273	-33.10	-22.70	0.685800604229607	9.5	2-13,281-270;14-18,266-262	1-1,282-282[UP5];x-x,269-267[BULt];19-21,261-259[UP3]	...(((((...((((((((((((.&.))))))))))))---)))))...	AACCAGAAACUACUCAGAGGAGGG&ACCUCCUUUGGGU---UUUUGAUU	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN54815_c0_g1_273_TPlot.pdf
TRINITY_DN5481_c0_g1:1648	si_a895	TRINITY_DN5481_c0_g1	1638	1657	1648	-21.70	-16.20	0.746543778801843	5.5	2-14,1656-1644;16-20,1643-1639	1-1,1657-1657[UP5];15-15,x-x[BULq];21-21,1638-1638[UP3]	.(((((-(((((((((((((.&.))))))))))))).))))).	AAUGUU-CUUGUUAUUGCUAA&AUAGUAAUAAUAAGUAAUAUA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN5481_c0_g1_1648_TPlot.pdf
TRINITY_DN5481_c0_g1:1650	si_a893	TRINITY_DN5481_c0_g1	1640	1659	1650	-21.70	-14.70	0.67741935483871	8	4-16,1656-1644;18-21,1643-1640	1-3,1659-1657[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	UGUU-CUUGUUAUUGCUAAAA&AUAUAGUAAUAAUAAGUAAUA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN5481_c0_g1_1650_TPlot.pdf
TRINITY_DN5484_c0_g1:820	si_a355	TRINITY_DN5484_c0_g1	809	829	820	-26.80	-17.60	0.656716417910448	6	1-11,829-819;14-18,816-812	12-13,818-817[SIL];19-21,811-809[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	GAAGAUCAUUAUAGAAUUAAU&AUUAAUUCUAUUUUGAUCGGA	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN5484_c0_g1_820_TPlot.pdf
TRINITY_DN5484_c0_g1:822	si_a353	TRINITY_DN5484_c0_g1	811	831	822	-24.00	-17.60	0.733333333333333	6	3-13,829-819;16-20,816-812	1-2,831-830[UP5];14-15,818-817[SIL];21-21,811-811[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	AGAUCAUUAUAGAAUUAAUUG&AUAUUAAUUCUAUUUUGAUCG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN5484_c0_g1_822_TPlot.pdf
TRINITY_DN5484_c0_g1:823	si_a352	TRINITY_DN5484_c0_g1	812	832	823	-22.50	-17.20	0.764444444444444	7	4-14,829-819;17-21,816-812	1-3,832-830[UP5];15-16,818-817[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	GAUCAUUAUAGAAUUAAUUGU&AAUAUUAAUUCUAUUUUGAUC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN5484_c0_g1_823_TPlot.pdf
TRINITY_DN5484_c0_g1:824	si_a351	TRINITY_DN5484_c0_g1	813	833	824	-20.50	-14.00	0.682926829268293	9	5-15,829-819;18-21,816-813	1-4,833-830[UP5];16-17,818-817[SIL]	((((..(((((((((((....&....)))))))))))..))))	AUCAUUAUAGAAUUAAUUGUA&AAAUAUUAAUUCUAUUUUGAU	2	0.996972158701439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN5484_c0_g1_824_TPlot.pdf
TRINITY_DN5485_c0_g1:2140	si_a761	TRINITY_DN5485_c0_g1	2129	2149	2140	-30.10	-19.90	0.661129568106312	7.5	1-11,2149-2139;12-16,2137-2133;18-21,2132-2129	x-x,2138-2138[BULt];17-17,x-x[BULq]	((((-(((((.(((((((((((&)))))))))))-))))).))))	GGUC-GUCAACAGACUCAGAGG&CCUUUGGGUUU-UUGAUUGAUU	3	0.999999999026339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN5485_c0_g1_2140_TPlot.pdf
TRINITY_DN5485_c0_g1:2141	si_a760	TRINITY_DN5485_c0_g1	2130	2150	2141	-31.10	-21.20	0.681672025723473	7	1-12,2150-2139;13-17,2137-2133;19-21,2132-2130	x-x,2138-2138[BULt];18-18,x-x[BULq]	(((-(((((.((((((((((((&))))))))))))-))))).)))	GUC-GUCAACAGACUCAGAGGA&UCCUUUGGGUUU-UUGAUUGAU	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN5485_c0_g1_2141_TPlot.pdf
TRINITY_DN5485_c0_g1:2142	si_a759	TRINITY_DN5485_c0_g1	2131	2151	2142	-32.60	-22.90	0.702453987730061	5.5	1-13,2151-2139;14-18,2137-2133;20-21,2132-2131	x-x,2138-2138[BULt];19-19,x-x[BULq]	((-(((((.(((((((((((((&)))))))))))))-))))).))	UC-GUCAACAGACUCAGAGGAG&CUCCUUUGGGUUU-UUGAUUGA	3	0.996100152895399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5485_c0_g1_2142_TPlot.pdf
TRINITY_DN5485_c0_g1:2144	si_a757	TRINITY_DN5485_c0_g1	2132	2153	2144	-33.10	-26.40	0.797583081570997	6	2-15,2152-2139;16-20,2137-2133	1-1,2153-2153[UP5];x-x,2138-2138[BULt];21-21,2132-2132[UP3]	.(((((.((((((((((((((.&.))))))))))))))-))))).	CGUCAACAGACUCAGAGGAGGG&ACCUCCUUUGGGUUU-UUGAUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5485_c0_g1_2144_TPlot.pdf
TRINITY_DN5485_c0_g1:2145	si_a756	TRINITY_DN5485_c0_g1	2133	2154	2145	-33.10	-26.40	0.797583081570997	7	3-16,2152-2139;17-21,2137-2133	1-2,2154-2153[UP5];x-x,2138-2138[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GUCAACAGACUCAGAGGAGGGC&AACCUCCUUUGGGUUU-UUGAU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN5485_c0_g1_2145_TPlot.pdf
TRINITY_DN5485_c0_g1:2267	si_a330	TRINITY_DN5485_c0_g1	2255	2276	2267	-30.50	-19.90	0.652459016393443	11	2-11,2275-2266;12-12,2264-2264;14-20,2262-2256	1-1,2276-2276[UP5];x-x,2265-2265[BULt];13-13,2263-2263[SIL];21-21,2255-2255[UP3]	.(((((((.(.((((((((((.&.))))))))))-).))))))).	GCGGGGCGUGCGAGUGGAGGAU&UUUUUUUAUUC-CUUGUCCCGA	3	0.999999981292735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN5485_c0_g1_2267_TPlot.pdf
TRINITY_DN5485_c0_g1:2268	si_a329	TRINITY_DN5485_c0_g1	2256	2277	2268	-29.60	-19.70	0.66554054054054	12	3-12,2275-2266;13-13,2264-2264;15-21,2262-2256	1-2,2277-2276[UP5];x-x,2265-2265[BULt];14-14,2263-2263[SIL]	(((((((.(.((((((((((..&..))))))))))-).)))))))	CGGGGCGUGCGAGUGGAGGAUU&AUUUUUUUAUUC-CUUGUCCCG	3	0.999999879536454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5485_c0_g1_2268_TPlot.pdf
TRINITY_DN5485_c0_g1:2386	si_a769	TRINITY_DN5485_c0_g1	2373	2395	2386	-26.70	-18.60	0.696629213483146	7.5	3-13,2393-2383;14-16,2381-2379;17-21,2377-2373	1-2,2395-2394[UP5];x-x,2382-2382[BULt];x-x,2378-2378[BULt]	(((((.(((.(((((((((((..&..)))))))))))-)))-)))))	GAGAGAUUGCAGUCGAUCAAAUA&UUUUUGAUUGAUU-CAA-CUCUU	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN5485_c0_g1_2386_TPlot.pdf
TRINITY_DN5485_c0_g1:2566	si_s366	TRINITY_DN5485_c0_g1	2556	2575	2566	-39.70	-26.00	0.654911838790932	7	1-4,2575-2572;6-10,2570-2566;12-18,2565-2559;20-21,2557-2556	5-5,2571-2571[SIL];11-11,x-x[BULq];19-19,2558-2558[SIL]	((.(((((((-(((((.((((&)))).))))).))))))).))	ACCCGAGCGG-CGGUUGAGUC&GAUUGAACCGAUCGCUCGCGU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s366_TRINITY_DN5485_c0_g1_2566_TPlot.pdf
TRINITY_DN5485_c0_g1:2569	si_s363	TRINITY_DN5485_c0_g1	2559	2578	2569	-36.20	-24.80	0.685082872928177	9.5	4-7,2575-2572;9-13,2570-2566;15-21,2565-2559	1-3,2578-2576[UP5];8-8,2571-2571[SIL];14-14,x-x[BULq]	(((((((-(((((.((((...&...)))).))))).)))))))	CGAGCGG-CGGUUGAGUCGGG&AUAGAUUGAACCGAUCGCUCG	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s363_TRINITY_DN5485_c0_g1_2569_TPlot.pdf
TRINITY_DN5485_c0_g1:2570	si_s362	TRINITY_DN5485_c0_g1	2560	2579	2570	-34.70	-22.80	0.657060518731988	11.5	5-8,2575-2572;10-14,2570-2566;16-21,2565-2560	1-4,2579-2576[UP5];9-9,2571-2571[SIL];15-15,x-x[BULq]	((((((-(((((.((((....&....)))).))))).))))))	GAGCGG-CGGUUGAGUCGGGC&AAUAGAUUGAACCGAUCGCUC	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN5485_c0_g1_2570_TPlot.pdf
TRINITY_DN5485_c0_g1:2594	si_s338	TRINITY_DN5485_c0_g1	2579	2603	2594	-35.60	-24.00	0.674157303370786	17	4-11,2600-2593;12-18,2588-2582	1-3,2603-2601[UP5];x-x,2592-2589[BULt];19-21,2581-2579[UP3]	...(((((((....((((((((...&...))))))))----)))))))...	CAUUCUCCCCGGCGGUGGAUCGGCG&AUACGAUUCAC----GGGGAGAUAA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s338_TRINITY_DN5485_c0_g1_2594_TPlot.pdf
TRINITY_DN5485_c0_g1:3311	si_a555	TRINITY_DN5485_c0_g1	3300	3320	3311	-33.70	-23.30	0.691394658753709	7.5	1-12,3320-3309;14-17,3307-3304;19-20,3302-3301	13-13,3308-3308[SIL];18-18,3303-3303[SIL];21-21,3300-3300[UP3]	.((.((((.((((((((((((&)))))))))))).)))).)).	GCGAGGGGCGAUGGGGAGAUA&UAUUUCUUUAUCUCCCCGUGA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN5485_c0_g1_3311_TPlot.pdf
TRINITY_DN5485_c0_g1:3312	si_a554	TRINITY_DN5485_c0_g1	3301	3321	3312	-34.40	-26.00	0.755813953488372	6.5	1-13,3321-3309;15-18,3307-3304;20-21,3302-3301	14-14,3308-3308[SIL];19-19,3303-3303[SIL]	((.((((.(((((((((((((&))))))))))))).)))).))	CGAGGGGCGAUGGGGAGAUAG&CUAUUUCUUUAUCUCCCCGUG	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN5485_c0_g1_3312_TPlot.pdf
TRINITY_DN5485_c0_g1:3313	si_a553	TRINITY_DN5485_c0_g1	3302	3322	3313	-33.70	-26.30	0.780415430267062	7	1-14,3322-3309;16-19,3307-3304	15-15,3308-3308[SIL];20-21,3303-3302[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GAGGGGCGAUGGGGAGAUAGA&UCUAUUUCUUUAUCUCCCCGU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN5485_c0_g1_3313_TPlot.pdf
TRINITY_DN5485_c0_g1:3315	si_a551	TRINITY_DN5485_c0_g1	3304	3324	3315	-31.60	-25.90	0.819620253164557	7.5	3-16,3322-3309;18-21,3307-3304	1-2,3324-3323[UP5];17-17,3308-3308[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GGGGCGAUGGGGAGAUAGAAA&AAUCUAUUUCUUUAUCUCCCC	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN5485_c0_g1_3315_TPlot.pdf
TRINITY_DN5485_c0_g1:3317	si_a549	TRINITY_DN5485_c0_g1	3306	3326	3317	-29.50	-19.30	0.654237288135593	10.5	5-18,3322-3309;20-21,3307-3306	1-4,3326-3323[UP5];19-19,3308-3308[SIL]	((.((((((((((((((....&....)))))))))))))).))	GGCGAUGGGGAGAUAGAAAAU&UCAAUCUAUUUCUUUAUCUCC	2	0.995319218271231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN5485_c0_g1_3317_TPlot.pdf
TRINITY_DN5485_c0_g1:3320	si_a790	TRINITY_DN5485_c0_g1	3309	3329	3320	-25.80	-17.20	0.666666666666667	9	5-17,3325-3313;19-21,3311-3309	1-4,3329-3326[UP5];18-18,3312-3312[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GAUGGGGAGAUAGAAAAUGCU&CUAUUUUUCUAUUUUCCAAUC	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN5485_c0_g1_3320_TPlot.pdf
TRINITY_DN5485_c0_g1:3967	si_s201	TRINITY_DN5485_c0_g1	3955	3976	3967	-33.60	-21.90	0.651785714285714	10.5	3-10,3974-3967;12-20,3964-3956	1-2,3976-3975[UP5];11-11,3966-3965[AILt];21-21,3955-3955[UP3]	.(((((((((..((((((((..&..))))))))-.))))))))).	CCGCAACUGGCCAUGUUCCACC&UUUGGAAUGU-ACCAGUUGUGU	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN5485_c0_g1_3967_TPlot.pdf
TRINITY_DN5485_c0_g1:4096	si_s806	TRINITY_DN5485_c0_g1	4085	4110	4096	-28.60	-19.60	0.685314685314685	18	4-8,4107-4103;9-21,4097-4085	1-3,4110-4108[UP5];x-x,4102-4098[BULt]	(((((((((((((.....(((((...&...)))))-----)))))))))))))	GAGAGAAGGUGAUGCCAGGAAGAGGC&UUAUCUUC-----GUUACCUUUUCUU	4	0.999999936727453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5485_c0_g1_4096_TPlot.pdf
TRINITY_DN5487_c2_g1:69	si_s7	TRINITY_DN5487_c2_g1	59	78	69	-21.70	-14.30	0.658986175115207	8	2-13,77-66;15-19,65-61	1-1,78-78[UP5];14-14,x-x[BULq];20-21,60-59[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	UCAUAGU-AUGGUGAGUAGUC&UAUUACUUAUUAUUACUAUAU	4	0.999998314889159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN5487_c2_g1_69_TPlot.pdf
TRINITY_DN54890_c0_g1:727	si_a771	TRINITY_DN54890_c0_g1	710	736	727	-29.40	-19.30	0.656462585034014	16	1-11,736-726;12-20,719-711	x-x,725-720[BULt];21-21,710-710[UP3]	.(((((((((......(((((((((((&)))))))))))------))))))))).	UGAAGAGUUGUCGUUAAAUCAGUUGAA&UUUGAUUGAUU------CAACUCUUCU	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN54890_c0_g1_727_TPlot.pdf
TRINITY_DN54894_c0_g1:158	si_s92	TRINITY_DN54894_c0_g1	147	167	158	-34.90	-23.20	0.664756446991404	7.5	1-11,167-157;13-18,155-150;20-21,148-147	12-12,156-156[SIL];19-19,149-149[SIL]	((.((((((.(((((((((((&))))))))))).)))))).))	AUGUGAAGCUGAGAGGAGGGA&UUCUUCUUCUUCGCUUCGGAU	2	0.999999967769811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN54894_c0_g1_158_TPlot.pdf
TRINITY_DN54894_c0_g1:159	si_s83	TRINITY_DN54894_c0_g1	148	168	159	-30.90	-20.20	0.653721682847896	9	2-12,167-157;15-18,154-151	1-1,168-168[UP5];13-14,156-155[SIL];19-21,150-148[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	UGUGAAGCUGAGAGGAGGGAU&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN54894_c0_g1_159_TPlot.pdf
TRINITY_DN54894_c0_g1:160	si_s82	TRINITY_DN54894_c0_g1	149	169	160	-28.90	-20.20	0.698961937716263	10	3-13,167-157;16-19,154-151	1-2,169-168[UP5];14-15,156-155[SIL];20-21,150-149[UP3]	..((((..(((((((((((..&..)))))))))))..))))..	GUGAAGCUGAGAGGAGGGAUG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN54894_c0_g1_160_TPlot.pdf
TRINITY_DN54894_c0_g1:169	si_s68	TRINITY_DN54894_c0_g1	158	179	169	-23.10	-15.20	0.658008658008658	9.5	1-6,179-174;7-10,172-169;12-21,167-158	x-x,173-173[BULt];11-11,168-168[SIL]	((((((((((.((((.((((((&))))))-)))).))))))))))	AGAGGAGGGAUGUAGUGGGUUG&CAACUU-CUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN54894_c0_g1_169_TPlot.pdf
TRINITY_DN54894_c0_g1:539	si_s72	TRINITY_DN54894_c0_g1	528	549	539	-24.10	-17.60	0.730290456431535	8.5	1-9,549-541;10-15,539-534;18-21,531-528	x-x,540-540[BULt];16-17,533-532[SIL]	((((..((((((.(((((((((&)))))))))-))))))..))))	GAGGUUAGAGAGUAGAAUGGAA&UUCUAUUUU-UUUUCUUUCCUU	4	0.999999999997593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN54894_c0_g1_539_TPlot.pdf
TRINITY_DN54894_c0_g1:718	si_a758	TRINITY_DN54894_c0_g1	707	727	718	-34.00	-22.30	0.655882352941176	8.5	2-17,726-711	1-1,727-727[UP5];18-21,710-707[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUGGCAAGAAUCUAGAGGAGA&CCUCCUUUGGGUUUUUGAUUG	3	0.99999997079684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN54894_c0_g1_718_TPlot.pdf
TRINITY_DN548_c0_g1:2626	si_a318	TRINITY_DN548_c0_g1	2616	2635	2626	-22.50	-14.82	0.658666666666667	7.5	1-12,2635-2624;17-21,2620-2616	13-16,2623-2621[AILq]	(((((...-((((((((((((&))))))))))))....)))))	GUAGGUGU-UCAUGGGUAGAU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN548_c0_g1_2626_TPlot.pdf
TRINITY_DN5491_c0_g1:1186	si_s692	TRINITY_DN5491_c0_g1	1175	1195	1186	-24.20	-16.30	0.673553719008265	8	1-9,1195-1187;11-18,1185-1178	10-10,1186-1186[SIL];19-21,1177-1175[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUGAAAUCGAUGAAUUAGGCU&AGUUUAAUUAGUCGAUUUAUU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN5491_c0_g1_1186_TPlot.pdf
TRINITY_DN5491_c0_g1:1559	si_s78	TRINITY_DN5491_c0_g1	1546	1568	1559	-26.20	-18.20	0.694656488549618	9.5	4-12,1565-1557;13-21,1554-1546	1-3,1568-1566[UP5];x-x,1556-1555[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	AGAGGAAAGCCGAAAGAAAACUC&UUUUUUUCUUUC--CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5491_c0_g1_1559_TPlot.pdf
TRINITY_DN5491_c0_g1:1560	si_s77	TRINITY_DN5491_c0_g1	1547	1569	1560	-25.50	-17.10	0.670588235294118	9.5	5-13,1565-1557;14-21,1554-1547	1-4,1569-1566[UP5];x-x,1556-1555[BULt]	((((((((..(((((((((....&....)))))))))--))))))))	GAGGAAAGCCGAAAGAAAACUCA&UUUUUUUUCUUUC--CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5491_c0_g1_1560_TPlot.pdf
TRINITY_DN5491_c0_g1:370	si_s815	TRINITY_DN5491_c0_g1	359	379	370	-25.00	-16.90	0.676	9	4-11,376-369;14-21,366-359	1-3,379-377[UP5];12-13,368-367[SIL]	((((((((..((((((((...&...))))))))..))))))))	UUCAUUAUGCAGAAAGGGAUA&UUACCUUUUCUUAAUAAUGAA	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN5491_c0_g1_370_TPlot.pdf
TRINITY_DN5491_c0_g1:742	si_a68	TRINITY_DN5491_c0_g1	731	751	742	-25.40	-17.60	0.692913385826772	6.5	1-10,751-742;12-15,740-737;17-20,735-732	11-11,741-741[SIL];16-16,736-736[SIL];21-21,731-731[UP3]	.((((.((((.((((((((((&)))))))))).)))).)))).	GGGAGUGCAAAUUGAAAGGAG&CUUCUUUCAAAUUGUUUUUCA	2	0.999833390537834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5491_c0_g1_742_TPlot.pdf
TRINITY_DN5491_c0_g1:743	si_a67	TRINITY_DN5491_c0_g1	732	752	743	-27.20	-19.30	0.709558823529412	6	1-11,752-742;13-16,740-737;18-21,735-732	12-12,741-741[SIL];17-17,736-736[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	GGAGUGCAAAUUGAAAGGAGU&GCUUCUUUCAAAUUGUUUUUC	3	0.999837544122648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN5491_c0_g1_743_TPlot.pdf
TRINITY_DN54925_c0_g1:333	si_a24	TRINITY_DN54925_c0_g1	322	342	333	-24.20	-16.40	0.677685950413223	19	10-21,333-322	1-9,342-334[UP5]	((((((((((((.........&.........))))))))))))	GUCUUGGAGCUGUGCGCCAAC&AUUUAUUUUUAGUUCUAAGAC	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN54925_c0_g1_333_TPlot.pdf
TRINITY_DN54925_c0_g1:686	si_a148	TRINITY_DN54925_c0_g1	676	695	686	-30.30	-20.62	0.680528052805281	11	1-10,695-686;15-19,682-678	11-14,685-683[AILq];20-21,677-676[UP3]	..(((((...-((((((((((&))))))))))....)))))..	UGGACCUCCU-GCGGCAACGA&UCGUUGUUGUUUUAAGGUCAA	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN54925_c0_g1_686_TPlot.pdf
TRINITY_DN54925_c0_g1:687	si_a147	TRINITY_DN54925_c0_g1	677	696	687	-30.40	-20.62	0.678289473684211	10	2-11,695-686;16-20,682-678	1-1,696-696[UP5];12-15,685-683[AILq];21-21,677-677[UP3]	.(((((...-((((((((((.&.))))))))))....))))).	GGACCUCCU-GCGGCAACGAC&AUCGUUGUUGUUUUAAGGUCA	3	0.999875134613737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN54925_c0_g1_687_TPlot.pdf
TRINITY_DN54925_c0_g1:688	si_a146	TRINITY_DN54925_c0_g1	678	697	688	-29.70	-20.22	0.680808080808081	10	3-12,695-686;17-21,682-678	1-2,697-696[UP5];13-16,685-683[AILq]	(((((...-((((((((((..&..))))))))))....)))))	GACCUCCU-GCGGCAACGACU&AAUCGUUGUUGUUUUAAGGUC	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN54925_c0_g1_688_TPlot.pdf
TRINITY_DN5495_c0_g1:2723	si_a307	TRINITY_DN5495_c0_g1	2708	2732	2723	-33.00	-25.48	0.772121212121212	11.5	1-12,2732-2721;14-19,2715-2710	13-13,2720-2716[AILt];20-21,2709-2708[UP3]	..((((((.....((((((((((((&))))))))))))----.))))))..	UGGGAUGACUUCUUCCAAGCGAAUC&GAUUCGCUUGGA----UUUAUCCAU	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN5495_c0_g1_2723_TPlot.pdf
TRINITY_DN5495_c0_g1:2729	si_a301	TRINITY_DN5495_c0_g1	2718	2738	2729	-27.80	-21.10	0.758992805755396	14	7-18,2732-2721	1-6,2738-2733[UP5];19-21,2720-2718[UP3]	...((((((((((((......&......))))))))))))...	UCUUCCAAGCGAAUCAACAGC&AAAAAAGAUUCGCUUGGAUUU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN5495_c0_g1_2729_TPlot.pdf
TRINITY_DN5495_c0_g1:4632	si_s95	TRINITY_DN5495_c0_g1	4621	4641	4632	-36.30	-23.80	0.65564738292011	7	1-12,4641-4630;14-16,4628-4626	13-13,4629-4629[SIL];17-21,4625-4621[UP3]	.....(((.((((((((((((&)))))))))))).))).....	GAUGGCCGCGGCGAAGAAGAA&UUCUUCUUCGCUUCGGAUUGG	3	0.999997731878951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN5495_c0_g1_4632_TPlot.pdf
TRINITY_DN5495_c0_g1:4636	si_s91	TRINITY_DN5495_c0_g1	4625	4645	4636	-34.70	-24.00	0.69164265129683	9.5	5-16,4641-4630;18-20,4628-4626	1-4,4645-4642[UP5];17-17,4629-4629[SIL];21-21,4625-4625[UP3]	.(((.((((((((((((....&....)))))))))))).))).	GCCGCGGCGAAGAAGAAUAUG&UUUCUUCUUCUUCGCUUCGGA	4	0.999999972291003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5495_c0_g1_4636_TPlot.pdf
TRINITY_DN5495_c0_g1:4637	si_s90	TRINITY_DN5495_c0_g1	4626	4646	4637	-35.30	-23.80	0.674220963172805	10.5	6-17,4641-4630;19-21,4628-4626	1-5,4646-4642[UP5];18-18,4629-4629[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	CCGCGGCGAAGAAGAAUAUGG&CUUUCUUCUUCUUCGCUUCGG	4	0.999999999993516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5495_c0_g1_4637_TPlot.pdf
TRINITY_DN5496_c0_g1:1333	si_a719	TRINITY_DN5496_c0_g1	1322	1345	1333	-34.60	-22.50	0.65028901734104	16	4-9,1342-1337;10-18,1333-1325	1-3,1345-1343[UP5];x-x,1336-1334[BULt];19-21,1324-1322[UP3]	...(((((((((...((((((...&...))))))---)))))))))...	UCGGCCCGAGUGCAGGCGAUUUGA&AAUAAUCGU---UACUCGGGCAUC	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN5496_c0_g1_1333_TPlot.pdf
TRINITY_DN5497_c0_g1:3417	si_a9	TRINITY_DN5497_c0_g1	3406	3427	3417	-29.60	-20.22	0.683108108108108	12	1-8,3427-3420;12-18,3415-3409	9-11,3419-3416[AILt];19-21,3408-3406[UP3]	...(((((((....((((((((&))))))))-...)))))))...	GCUGAUGGGCGCUGCUCUUCAA&UUGAAGAG-AAAGCCUAUUUAU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN5497_c0_g1_3417_TPlot.pdf
TRINITY_DN5497_c0_g1:4411	si_s888	TRINITY_DN5497_c0_g1	4409	4420	4411	-26.80	-17.70	0.66044776119403	2	11-21,4419-4409	10-10,4420-4420[SIL]	(((((((((((.&.)))))))))))	GAGAGAGGGCCA&AAAAUAAAUAGG	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN5497_c0_g1_4411_TPlot.pdf
TRINITY_DN5497_c0_g1:4578	si_s70	TRINITY_DN5497_c0_g1	4564	4587	4578	-25.80	-17.10	0.662790697674419	10	1-13,4587-4575;15-18,4571-4568;19-21,4566-4564	14-14,4574-4572[AILt];x-x,4567-4567[BULt]	(((.((((...(((((((((((((&)))))))))))))--.))))-)))	GGAUGAGACUCGAGAGGUGGAGGU&ACUUCUAUUUUUU--UUCUU-UCC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5497_c0_g1_4578_TPlot.pdf
TRINITY_DN5497_c0_g1:875	si_a490	TRINITY_DN5497_c0_g1	864	884	875	-28.10	-18.40	0.654804270462633	10	4-8,881-877;10-12,875-873;14-21,871-864	1-3,884-882[UP5];9-9,876-876[SIL];13-13,872-872[SIL]	((((((((.(((.(((((...&...))))).))).))))))))	GCGAAAGAGGACCUGUUCCUU&AUAGAAUAUGUCGUUUUUCGU	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN5497_c0_g1_875_TPlot.pdf
TRINITY_DN54993_c0_g1:15	si_a779	TRINITY_DN54993_c0_g1	4	24	15	-27.00	-22.60	0.837037037037037	5.5	2-14,23-11;17-21,8-4	1-1,24-24[UP5];15-16,10-9[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AGAAAUUUGGGAGAGUUGGAA&AUUCAACUCUUCUAUUUUUCU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN54993_c0_g1_15_TPlot.pdf
TRINITY_DN54993_c0_g1:16	si_a778	TRINITY_DN54993_c0_g1	5	25	16	-28.30	-21.30	0.752650176678445	7.5	3-15,23-11;18-21,8-5	1-2,25-24[UP5];16-17,10-9[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GAAAUUUGGGAGAGUUGGAAC&GAUUCAACUCUUCUAUUUUUC	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN54993_c0_g1_16_TPlot.pdf
TRINITY_DN54993_c0_g1:191	si_s82	TRINITY_DN54993_c0_g1	180	201	191	-28.90	-22.40	0.775086505190311	6.5	1-8,201-194;9-10,192-191;12-21,189-180	x-x,193-193[BULt];11-11,190-190[SIL]	((((((((((.((.((((((((&))))))))-)).))))))))))	GAGAAGAAGACAGAGAGAGGAA&UUUCUUUC-CUUUCUUCUUCUU	2	0.999311501258161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN54993_c0_g1_191_TPlot.pdf
TRINITY_DN54993_c0_g1:192	si_s81	TRINITY_DN54993_c0_g1	181	202	192	-28.90	-21.40	0.740484429065744	7	2-9,201-194;10-11,192-191;13-21,189-181	1-1,202-202[UP5];x-x,193-193[BULt];12-12,190-190[SIL]	(((((((((.((.((((((((.&.))))))))-)).)))))))))	AGAAGAAGACAGAGAGAGGAAC&UUUUCUUUC-CUUUCUUCUUCU	2	0.999999190468162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN54993_c0_g1_192_TPlot.pdf
TRINITY_DN549_c0_g1:475	si_a760	TRINITY_DN549_c0_g1	464	484	475	-31.10	-20.40	0.655948553054662	8.5	1-15,484-470	16-21,469-464[UP3]	......(((((((((((((((&)))))))))))))))......	UUACCACAGGAAUCCAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999999999267504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN549_c0_g1_475_TPlot.pdf
TRINITY_DN54_c0_g1:1387	si_a73	TRINITY_DN54_c0_g1	1376	1395	1387	-21.90	-14.40	0.657534246575343	9.5	1-4,1395-1392;7-18,1390-1379	5-6,1391-1391[AILq];19-21,1378-1376[UP3]	...((((((((((((.-((((&))))..))))))))))))...	UCAAGUGAAGAACAGG-UGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN54_c0_g1_1387_TPlot.pdf
TRINITY_DN54_c0_g1:2574	si_s90	TRINITY_DN54_c0_g1	2554	2583	2574	-35.30	-24.30	0.688385269121813	19.5	1-12,2583-2572;13-17,2563-2559;18-21,2557-2554	x-x,2571-2564[BULt];x-x,2558-2558[BULt]	((((.(((((........((((((((((((&))))))))))))--------)))))-))))	UCGACAGCGACAGAAAAAGGAAGAAGAGAG&CUUUCUUCUUCU--------UCGCU-UCGG	3	0.999999992477201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN54_c0_g1_2574_TPlot.pdf
TRINITY_DN54_c0_g1:2575	si_s89	TRINITY_DN54_c0_g1	2555	2584	2575	-35.30	-26.10	0.739376770538244	10.5	1-13,2584-2572;14-18,2563-2559;19-21,2557-2555	x-x,2571-2564[BULt];x-x,2558-2558[BULt]	(((.(((((........(((((((((((((&)))))))))))))--------)))))-)))	CGACAGCGACAGAAAAAGGAAGAAGAGAGG&CCUUUCUUCUUCU--------UCGCU-UCG	2	0.975799899695385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN54_c0_g1_2575_TPlot.pdf
TRINITY_DN54_c0_g1:2576	si_s88	TRINITY_DN54_c0_g1	2556	2585	2576	-34.80	-25.70	0.738505747126437	10.5	1-14,2585-2572;15-19,2563-2559;20-21,2557-2556	x-x,2571-2564[BULt];x-x,2558-2558[BULt]	((.(((((........((((((((((((((&))))))))))))))--------)))))-))	GACAGCGACAGAAAAAGGAAGAAGAGAGGA&UCCUUUCUUCUUCU--------UCGCU-UC	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN54_c0_g1_2576_TPlot.pdf
TRINITY_DN54_c0_g1:2578	si_s86	TRINITY_DN54_c0_g1	2559	2587	2578	-32.90	-25.40	0.772036474164134	12.5	3-16,2585-2572;17-21,2563-2559	1-2,2587-2586[UP5];x-x,2571-2564[BULt]	(((((........((((((((((((((..&..))))))))))))))--------)))))	AGCGACAGAAAAAGGAAGAAGAGAGGAUC&UUUCCUUUCUUCUUCU--------UCGCU	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN54_c0_g1_2578_TPlot.pdf
TRINITY_DN54_c0_g1:2580	si_s84	TRINITY_DN54_c0_g1	2569	2589	2580	-32.30	-22.00	0.681114551083591	10.5	5-19,2585-2571	1-4,2589-2586[UP5];20-21,2570-2569[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAGGAAGAAGAGAGGAUCAA&UCUUUCCUUUCUUCUUCUUCG	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN54_c0_g1_2580_TPlot.pdf
TRINITY_DN54_c0_g1:2581	si_s83	TRINITY_DN54_c0_g1	2570	2590	2581	-30.90	-22.00	0.711974110032362	11.5	6-20,2585-2571	1-5,2590-2586[UP5];21-21,2570-2570[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGGAAGAAGAGAGGAUCAAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999999962578053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN54_c0_g1_2581_TPlot.pdf
TRINITY_DN54_c0_g1:2582	si_s82	TRINITY_DN54_c0_g1	2571	2591	2582	-28.90	-22.00	0.761245674740484	12.5	7-21,2585-2571	1-6,2591-2586[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAAGAAGAGAGGAUCAAAG&UUUCUUUCCUUUCUUCUUCUU	2	0.999937672249124	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN54_c0_g1_2582_TPlot.pdf
TRINITY_DN54_c0_g1:2583	si_s81	TRINITY_DN54_c0_g1	2572	2601	2583	-28.90	-22.80	0.788927335640139	20.5	1-7,2601-2595;8-21,2585-2572	x-x,2594-2586[BULt]	((((((((((((((.........(((((((&)))))))---------))))))))))))))	GGAAGAAGAGAGGAUCAAAGCGGAAGAAGA&UUUUCUU---------UCCUUUCUUCUUCU	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN54_c0_g1_2583_TPlot.pdf
TRINITY_DN54_c0_g1:2584	si_s80	TRINITY_DN54_c0_g1	2573	2602	2584	-28.20	-22.40	0.794326241134752	19.5	1-8,2602-2595;9-21,2585-2573	x-x,2594-2586[BULt]	(((((((((((((.........((((((((&))))))))---------)))))))))))))	GAAGAAGAGAGGAUCAAAGCGGAAGAAGAA&UUUUUCUU---------UCCUUUCUUCUUC	2	0.994698834932959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN54_c0_g1_2584_TPlot.pdf
TRINITY_DN54_c0_g1:2585	si_s79	TRINITY_DN54_c0_g1	2574	2603	2585	-26.20	-19.30	0.736641221374046	20.5	2-9,2602-2595;10-21,2585-2574	1-1,2603-2603[UP5];x-x,2594-2586[BULt]	((((((((((((.........((((((((.&.))))))))---------))))))))))))	AAGAAGAGAGGAUCAAAGCGGAAGAAGAAC&UUUUUUCUU---------UCCUUUCUUCUU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN54_c0_g1_2585_TPlot.pdf
TRINITY_DN54_c0_g1:2586	si_s78	TRINITY_DN54_c0_g1	2575	2601	2586	-26.20	-19.26	0.735114503816794	17.5	1-9,2601-2593;11-21,2585-2575	10-10,2592-2586[AILt]	(((((((((((.......(((((((((&)))))))))------.)))))))))))	AGAAGAGAGGAUCAAAGCGGAAGAAGA&UUUUUUUCU------UUCCUUUCUUCU	3	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN54_c0_g1_2586_TPlot.pdf
TRINITY_DN54_c0_g1:2594	si_s76	TRINITY_DN54_c0_g1	2577	2603	2594	-23.60	-15.46	0.655084745762712	18.5	2-11,2602-2593;13-21,2585-2577	1-1,2603-2603[UP5];12-12,2592-2586[AILt]	(((((((((.......((((((((((.&.))))))))))------.)))))))))	AAGAGAGGAUCAAAGCGGAAGAAGAAC&AUUUUUUUUCU------UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN54_c0_g1_2594_TPlot.pdf
TRINITY_DN54_c0_g1:2628	si_s84	TRINITY_DN54_c0_g1	2614	2637	2628	-32.30	-23.44	0.725696594427245	11.5	1-10,2637-2628;12-21,2623-2614	11-11,2627-2624[AILt]	((((((((((....((((((((((&))))))))))---.))))))))))	CGAAGAGGAGAUGCGAAGGAAGGA&UCUUUCCUUU---CUUCUUCUUCG	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN54_c0_g1_2628_TPlot.pdf
TRINITY_DN54_c0_g1:2629	si_s83	TRINITY_DN54_c0_g1	2615	2638	2629	-30.90	-22.04	0.713268608414239	11.5	1-11,2638-2628;13-21,2623-2615	12-12,2627-2624[AILt]	(((((((((....(((((((((((&)))))))))))---.)))))))))	GAAGAGGAGAUGCGAAGGAAGGAG&UUCUUUCCUUU---CUUCUUCUUC	3	0.999999999997518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN54_c0_g1_2629_TPlot.pdf
TRINITY_DN54_c0_g1:2630	si_s82	TRINITY_DN54_c0_g1	2618	2639	2630	-28.90	-20.70	0.716262975778547	7.5	1-12,2639-2628;13-13,2626-2626;15-21,2624-2618	x-x,2627-2627[BULt];14-14,2625-2625[SIL]	(((((((.(.((((((((((((&))))))))))))-).)))))))	GAGGAGAUGCGAAGGAAGGAGG&UUUCUUUCCUUU-CUUCUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN54_c0_g1_2630_TPlot.pdf
TRINITY_DN54_c0_g1:2631	si_s81	TRINITY_DN54_c0_g1	2614	2640	2631	-28.90	-20.70	0.716262975778547	17.5	2-12,2639-2629;13-20,2622-2615	1-1,2640-2640[UP5];x-x,2628-2623[BULt];21-21,2614-2614[UP3]	.((((((((......(((((((((((.&.)))))))))))------)))))))).	CGAAGAGGAGAUGCGAAGGAAGGAGGU&UUUUCUUUCCUU------UCUUCUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN54_c0_g1_2631_TPlot.pdf
TRINITY_DN54_c0_g1:2633	si_s74	TRINITY_DN54_c0_g1	2616	2642	2633	-25.00	-16.50	0.66	12.5	1-14,2642-2629;15-20,2622-2617	x-x,2628-2623[BULt];21-21,2616-2616[UP3]	.((((((......((((((((((((((&))))))))))))))------)))))).	AAGAGGAGAUGCGAAGGAAGGAGGUAG&CUAUUUUUUUUCUU------UCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN54_c0_g1_2633_TPlot.pdf
TRINITY_DN54_c0_g1:2634	si_s73	TRINITY_DN54_c0_g1	2617	2643	2634	-24.00	-18.10	0.754166666666667	11.5	1-15,2643-2629;16-21,2622-2617	x-x,2628-2623[BULt]	((((((......(((((((((((((((&)))))))))))))))------))))))	AGAGGAGAUGCGAAGGAAGGAGGUAGA&UCUAUUUUUUUUCUU------UCCUUU	3	0.999999980910168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN54_c0_g1_2634_TPlot.pdf
TRINITY_DN54_c0_g1:2637	si_s79	TRINITY_DN54_c0_g1	2626	2648	2637	-26.20	-20.50	0.782442748091603	9.5	1-8,2648-2641;9-19,2638-2628	x-x,2640-2639[BULt];20-21,2627-2626[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	GCGAAGGAAGGAGGUAGAGAAGA&UUUUUUCU--UUCCUUUCUUCUU	2	0.999932839608669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN54_c0_g1_2637_TPlot.pdf
TRINITY_DN54_c0_g1:2638	si_s78	TRINITY_DN54_c0_g1	2627	2649	2638	-26.20	-21.40	0.816793893129771	8.5	1-9,2649-2641;10-20,2638-2628	x-x,2640-2639[BULt];21-21,2627-2627[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	CGAAGGAAGGAGGUAGAGAAGAA&UUUUUUUCU--UUCCUUUCUUCU	2	0.992941814243192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN54_c0_g1_2638_TPlot.pdf
TRINITY_DN54_c0_g1:2642	si_s70	TRINITY_DN54_c0_g1	2631	2651	2642	-25.80	-17.30	0.670542635658915	8.5	2-6,2650-2646;8-11,2644-2641;13-21,2639-2631	1-1,2651-2651[UP5];7-7,2645-2645[SIL];12-12,2640-2640[SIL]	(((((((((.((((.(((((.&.))))).)))).)))))))))	GGAAGGAGGUAGAGAAGAAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN54_c0_g1_2642_TPlot.pdf
TRINITY_DN54_c0_g1:2643	si_s77	TRINITY_DN54_c0_g1	2628	2652	2643	-25.50	-21.90	0.858823529411765	11.5	1-11,2652-2642;12-21,2637-2628	x-x,2641-2638[BULt]	((((((((((....(((((((((((&)))))))))))----))))))))))	GAAGGAAGGAGGUAGAGAAGAAGAA&UUUUUUUUCUU----UCCUUUCUUC	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN54_c0_g1_2643_TPlot.pdf
TRINITY_DN54_c0_g1:2644	si_s76	TRINITY_DN54_c0_g1	2629	2653	2644	-23.60	-18.60	0.788135593220339	12.5	2-12,2652-2642;13-21,2637-2629	1-1,2653-2653[UP5];x-x,2641-2638[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	AAGGAAGGAGGUAGAGAAGAAGAAA&AUUUUUUUUCUU----UCCUUUCUU	2	0.999995376455309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN54_c0_g1_2644_TPlot.pdf
TRINITY_DN54_c0_g1:2646	si_a549	TRINITY_DN54_c0_g1	2635	2655	2646	-29.50	-20.10	0.68135593220339	8	1-2,2655-2654;5-7,2651-2649;9-21,2647-2635	3-4,2653-2652[SIL];8-8,2648-2648[SIL]	(((((((((((((.(((..((&))..))).)))))))))))))	GGAGGUAGAGAAGAAGAAAGA&UCAAUCUAUUUCUUUAUCUCC	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN54_c0_g1_2646_TPlot.pdf
TRINITY_DN54_c0_g1:2647	si_a548	TRINITY_DN54_c0_g1	2636	2656	2647	-27.20	-17.70	0.650735294117647	8	1-3,2656-2654;6-8,2651-2649;10-21,2647-2636	4-5,2653-2652[SIL];9-9,2648-2648[SIL]	((((((((((((.(((..(((&)))..))).))))))))))))	GAGGUAGAGAAGAAGAAAGAA&UUCAAUCUAUUUCUUUAUCUC	2	0.999180446586324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN54_c0_g1_2647_TPlot.pdf
TRINITY_DN54_c0_g1:2648	si_s87	TRINITY_DN54_c0_g1	2637	2657	2648	-32.90	-21.40	0.650455927051672	7.5	4-16,2654-2642;18-21,2640-2637	1-3,2657-2655[UP5];17-17,2641-2641[SIL]	((((.(((((((((((((...&...))))))))))))).))))	AGGUAGAGAAGAAGAAAGAAA&UUCCUUUCUUCUUCUUCGCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN54_c0_g1_2648_TPlot.pdf
TRINITY_DN54_c0_g1:2683	si_a787	TRINITY_DN54_c0_g1	2673	2692	2683	-26.30	-17.70	0.673003802281369	4	1-4,2692-2689;6-13,2687-2680;15-20,2679-2674	5-5,2688-2688[SIL];14-14,x-x[BULq];21-21,2673-2673[UP3]	.((((((-((((((((.((((&)))).)))))))).)))))).	CGGAAAA-AGAAAAAUCGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.999999999999509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN54_c0_g1_2683_TPlot.pdf
TRINITY_DN54_c0_g1:2684	si_a786	TRINITY_DN54_c0_g1	2674	2693	2684	-26.60	-17.50	0.657894736842105	3.5	1-5,2693-2689;7-14,2687-2680;16-21,2679-2674	6-6,2688-2688[SIL];15-15,x-x[BULq]	((((((-((((((((.(((((&))))).)))))))).))))))	GGAAAA-AGAAAAAUCGAAGG&UCUUCUAUUUUUCUAUUUUCC	2	0.999999999735869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN54_c0_g1_2684_TPlot.pdf
TRINITY_DN54_c0_g1:3382	si_a411	TRINITY_DN54_c0_g1	3371	3391	3382	-17.90	-11.70	0.653631284916201	10	1-14,3391-3378	15-21,3377-3371[UP3]	.......((((((((((((((&)))))))))))))).......	UCCUCAAUAAAUGUAGGCAAA&UUUGUUUAUAUUUAAAUAAAU	2	0.999999965270813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN54_c0_g1_3382_TPlot.pdf
TRINITY_DN54_c0_g1:3383	si_a410	TRINITY_DN54_c0_g1	3372	3392	3383	-17.80	-11.90	0.668539325842697	10	2-15,3391-3378	1-1,3392-3392[UP5];16-21,3377-3372[UP3]	......((((((((((((((.&.))))))))))))))......	CCUCAAUAAAUGUAGGCAAAU&UUUUGUUUAUAUUUAAAUAAA	2	0.999999974238713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN54_c0_g1_3383_TPlot.pdf
TRINITY_DN54_c0_g1:3387	si_a406	TRINITY_DN54_c0_g1	3376	3396	3387	-19.80	-13.60	0.686868686868687	8.5	2-4,3395-3393;6-19,3391-3378	1-1,3396-3396[UP5];5-5,3392-3392[SIL];20-21,3377-3376[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AAUAAAUGUAGGCAAAUCAGG&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN54_c0_g1_3387_TPlot.pdf
TRINITY_DN55004_c0_g1:236	si_a181	TRINITY_DN55004_c0_g1	222	247	236	-32.00	-21.90	0.684375	8.5	1-9,247-239;10-17,236-229;18-21,225-222	x-x,238-237[BULt];x-x,228-226[BULt]	((((...((((((((..(((((((((&)))))))))--))))))))---))))	CAGGCUCGAGAGAUGAUUUAUCUAGA&UCUAGAUAA--UAUCUUUC---CCUG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN55004_c0_g1_236_TPlot.pdf
TRINITY_DN5500_c0_g1:590	si_s352	TRINITY_DN5500_c0_g1	579	599	590	-27.20	-19.60	0.720588235294118	6.5	1-8,599-592;10-20,590-580	9-9,591-591[SIL];21-21,579-579[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	CUCAGUUUGUUUGUUUGUUUC&GAGAUAAAGAAAUAGAUUGAA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN5500_c0_g1_590_TPlot.pdf
TRINITY_DN55019_c0_g1:732	si_a500	TRINITY_DN55019_c0_g1	720	742	732	-34.40	-22.60	0.656976744186047	7.5	2-7,741-736;8-15,734-727;16-20,725-721	1-1,742-742[UP5];x-x,735-735[BULt];x-x,726-726[BULt];21-21,720-720[UP3]	.(((((.((((((((.((((((.&.))))))-))))))))-))))).	ACCGAGAGAAGACGAUGAAAUGC&UCGUUUU-UCGUCUUC-CUUGGA	4	0.999999999896927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN55019_c0_g1_732_TPlot.pdf
TRINITY_DN5501_c0_g2:1169	si_a737	TRINITY_DN5501_c0_g2	1158	1180	1169	-38.60	-25.10	0.650259067357513	11	2-4,1179-1177;6-7,1175-1174;8-9,1172-1171;10-19,1169-1160	1-1,1180-1180[UP5];5-5,1176-1176[SIL];x-x,1173-1173[BULt];x-x,1170-1170[BULt];20-21,1159-1158[UP3]	..((((((((((.((.((.(((.&.))).))-))-))))))))))..	AGCAUGGCCAGGAGGAUGCGGAA&AUCUUUA-CC-CCUGGCCAUGAA	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a737_TRINITY_DN5501_c0_g2_1169_TPlot.pdf
TRINITY_DN5501_c0_g2:1170	si_a735	TRINITY_DN5501_c0_g2	1160	1176	1170	-41.70	-28.80	0.690647482014388	9	1-7,1176-1170;12-21,1169-1160	8-11,x-x[BULq]	((((((((((----(((((((&)))))))....))))))))))	CAUGGCCAGG----AGGAUGC&GCAUCUUUACCCCUGGCCAUG	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN5501_c0_g2_1170_TPlot.pdf
TRINITY_DN5501_c0_g2:1403	si_s292	TRINITY_DN5501_c0_g2	1392	1415	1403	-36.60	-24.10	0.658469945355191	11	1-7,1415-1409;8-9,1405-1404;11-21,1402-1392	x-x,1408-1406[BULt];10-10,1403-1403[SIL]	(((((((((((.((...(((((((&)))))))---)).)))))))))))	UCGUGAUUCCAUUCUUAGAUUGGG&CCUAGUC---GAUUGGAAUUGCGA	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN5501_c0_g2_1403_TPlot.pdf
TRINITY_DN5501_c0_g2:1447	si_s82	TRINITY_DN5501_c0_g2	1436	1466	1447	-28.90	-18.80	0.650519031141869	24.5	1-6,1466-1461;7-17,1450-1440;19-21,1438-1436	x-x,1460-1451[BULt];18-18,1439-1439[SIL]	(((.(((((((((((..........((((((&))))))----------))))))))))).)))	GAGUAGAAGAGAGGAUGUUUACAAUGAGAGA&UUUCUU----------UCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5501_c0_g2_1447_TPlot.pdf
TRINITY_DN5501_c0_g2:1450	si_s79	TRINITY_DN5501_c0_g2	1439	1469	1450	-26.20	-17.80	0.679389312977099	25.5	2-9,1468-1461;10-20,1450-1440	1-1,1469-1469[UP5];x-x,1460-1451[BULt];21-21,1439-1439[UP3]	.(((((((((((..........((((((((.&.))))))))----------))))))))))).	UAGAAGAGAGGAUGUUUACAAUGAGAGAAGU&UUUUUUCUU----------UCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5501_c0_g2_1450_TPlot.pdf
TRINITY_DN5501_c0_g2:1461	si_s78	TRINITY_DN5501_c0_g2	1440	1470	1461	-26.20	-17.80	0.679389312977099	26.5	3-10,1468-1461;11-21,1450-1440	1-2,1470-1469[UP5];x-x,1460-1451[BULt]	(((((((((((..........((((((((..&..))))))))----------)))))))))))	AGAAGAGAGGAUGUUUACAAUGAGAGAAGUA&UUUUUUUCUU----------UCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5501_c0_g2_1461_TPlot.pdf
TRINITY_DN5501_c0_g2:1943	si_s6	TRINITY_DN5501_c0_g2	1932	1952	1943	-21.70	-15.20	0.700460829493088	10.5	4-17,1949-1936	1-3,1952-1950[UP5];18-21,1935-1932[UP3]	....((((((((((((((...&...))))))))))))))....	CUUCGUAGUGAUAAGUAAAAA&AUAUUACUUAUUAUUACUAUA	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN5501_c0_g2_1943_TPlot.pdf
TRINITY_DN5501_c0_g2:1945	si_s4	TRINITY_DN5501_c0_g2	1934	1954	1945	-21.60	-15.20	0.703703703703704	12	6-19,1949-1936	1-5,1954-1950[UP5];20-21,1935-1934[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGUAGUGAUAAGUAAAAAUU&UUAUAUUACUUAUUAUUACUA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN5501_c0_g2_1945_TPlot.pdf
TRINITY_DN5501_c0_g2:1946	si_s3	TRINITY_DN5501_c0_g2	1935	1955	1946	-21.20	-15.20	0.716981132075472	13	7-20,1949-1936	1-6,1955-1950[UP5];21-21,1935-1935[UP3]	.((((((((((((((......&......)))))))))))))).	CGUAGUGAUAAGUAAAAAUUG&UUUAUAUUACUUAUUAUUACU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN5501_c0_g2_1946_TPlot.pdf
TRINITY_DN5501_c0_g2:2122	si_a477	TRINITY_DN5501_c0_g2	2110	2131	2122	-21.50	-14.60	0.67906976744186	9.5	4-13,2128-2119;14-20,2117-2111	1-3,2131-2129[UP5];x-x,2118-2118[BULt];21-21,2110-2110[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	AGUUCUAUAAUGGCAAUAACAA&UAAUUAUUGUUAU-AUAGAAUA	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN5501_c0_g2_2122_TPlot.pdf
TRINITY_DN55029_c0_g1:478	si_s454	TRINITY_DN55029_c0_g1	465	487	478	-25.50	-17.70	0.694117647058824	8	1-10,487-478;11-17,475-469	x-x,477-476[BULt];18-21,468-465[UP3]	....(((((((..((((((((((&))))))))))--)))))))....	GCUGGAGAUAAAUUUGUUGUUAU&AUAACAACAA--UUAUCUCAUAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s454_TRINITY_DN55029_c0_g1_478_TPlot.pdf
TRINITY_DN55029_c0_g1:483	si_s449	TRINITY_DN55029_c0_g1	470	492	483	-23.60	-15.40	0.652542372881356	9	5-15,488-478;16-21,475-470	1-4,492-489[UP5];x-x,477-476[BULt]	((((((..(((((((((((....&....)))))))))))--))))))	AGAUAAAUUUGUUGUUAUAAAUU&UAUAUAUAACAACAA--UUAUCU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN55029_c0_g1_483_TPlot.pdf
TRINITY_DN5502_c0_g1:452	si_s144	TRINITY_DN5502_c0_g1	439	461	452	-33.10	-23.10	0.697885196374622	5	1-3,461-459;5-13,457-449;15-21,445-439	4-4,458-458[SIL];14-14,448-446[AILt]	(((((((...(((((((((.(((&))).)))))))))--.)))))))	AACCUCCAGAUUGGGUUUUAGAU&AUCAAAAACCCAA--AGGAGGUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s144_TRINITY_DN5502_c0_g1_452_TPlot.pdf
TRINITY_DN5502_c0_g1:453	si_s143	TRINITY_DN5502_c0_g1	440	462	453	-33.10	-23.50	0.709969788519637	5	1-4,462-459;6-14,457-449;16-21,445-440	5-5,458-458[SIL];15-15,448-446[AILt]	((((((...(((((((((.((((&)))).)))))))))--.))))))	ACCUCCAGAUUGGGUUUUAGAUU&AAUCAAAAACCCAA--AGGAGGU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s143_TRINITY_DN5502_c0_g1_453_TPlot.pdf
TRINITY_DN5502_c0_g1:552	si_s73	TRINITY_DN5502_c0_g1	541	560	552	-24.00	-16.10	0.670833333333333	8.5	1-5,560-556;8-18,554-544	6-7,555-555[AILq];19-21,543-541[UP3]	...(((((((((((.-(((((&)))))..)))))))))))...	UGUGGGAAGAAAAAU-AUGGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5502_c0_g1_552_TPlot.pdf
TRINITY_DN5502_c0_g1:553	si_s72	TRINITY_DN5502_c0_g1	542	561	553	-24.10	-17.00	0.705394190871369	7.5	1-6,561-556;9-19,554-544	7-8,555-555[AILq];20-21,543-542[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	GUGGGAAGAAAAAU-AUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999986343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5502_c0_g1_553_TPlot.pdf
TRINITY_DN5502_c0_g1:554	si_s71	TRINITY_DN5502_c0_g1	543	562	554	-25.70	-17.20	0.669260700389105	7.5	2-7,561-556;10-20,554-544	1-1,562-562[UP5];8-9,555-555[AILq];21-21,543-543[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	UGGGAAGAAAAAU-AUGGAAA&CUUCUAUUUUUUUUCUUUCCU	0	0.792148766560632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5502_c0_g1_554_TPlot.pdf
TRINITY_DN5502_c0_g1:555	si_s70	TRINITY_DN5502_c0_g1	544	563	555	-25.80	-16.80	0.651162790697674	8.5	3-8,561-556;11-21,554-544	1-2,563-562[UP5];9-10,555-555[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	GGGAAGAAAAAU-AUGGAAAA&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5502_c0_g1_555_TPlot.pdf
TRINITY_DN5504_c0_g1:536	si_s71	TRINITY_DN5504_c0_g1	525	545	536	-25.70	-17.14	0.666926070038911	11	1-4,545-542;10-21,536-525	5-9,541-537[SIL]	((((((((((((.....((((&)))).....))))))))))))	GGGAAGGAAAAAUUAACGAAG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5504_c0_g1_536_TPlot.pdf
TRINITY_DN5505_c0_g1:4431	si_s663	TRINITY_DN5505_c0_g1	4420	4440	4431	-34.80	-23.20	0.666666666666667	11	1-10,4440-4431;13-14,4428-4427	11-12,4430-4429[SIL];15-21,4426-4420[UP3]	.......((..((((((((((&))))))))))..)).......	CUGCCGAAAGGCGAUCCCCCG&CGGGGGAUCGAAUUGAUUAUA	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s663_TRINITY_DN5505_c0_g1_4431_TPlot.pdf
TRINITY_DN55072_c1_g1:148	si_a830	TRINITY_DN55072_c1_g1	140	157	148	-25.80	-18.40	0.713178294573643	6.5	1-10,157-148;14-20,147-141	11-13,x-x[BULq];21-21,140-140[UP3]	.(((((((---((((((((((&))))))))))...))))))).	UCUUCUGU---UUUUCUUUCC&GGAAAGAAAAAAAAUAGAAGU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a830_TRINITY_DN55072_c1_g1_148_TPlot.pdf
TRINITY_DN5507_c0_g1:492	si_s46	TRINITY_DN5507_c0_g1	481	501	492	-25.00	-16.40	0.656	13	6-18,496-484	1-5,501-497[UP5];19-21,483-481[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAUCUUGGGAUCCAAUACGAU&UAAUAAUUGGAUUUCAAGUUA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN5507_c0_g1_492_TPlot.pdf
TRINITY_DN5507_c0_g1:493	si_s45	TRINITY_DN5507_c0_g1	482	502	493	-24.70	-16.40	0.663967611336032	14	7-19,496-484	1-6,502-497[UP5];20-21,483-482[UP3]	..(((((((((((((......&......)))))))))))))..	AUCUUGGGAUCCAAUACGAUU&UUAAUAAUUGGAUUUCAAGUU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN5507_c0_g1_493_TPlot.pdf
TRINITY_DN5508_c0_g1:4014	si_a546	TRINITY_DN5508_c0_g1	4002	4025	4014	-28.60	-18.60	0.65034965034965	9.5	1-6,4025-4020;7-11,4017-4013;13-21,4010-4002	x-x,4019-4018[BULt];12-12,4012-4011[AILt]	(((((((((..(((((..((((((&))))))--)))))-.)))))))))	GAUAGAGAAUCUAGAUUUUGAAUC&GGUUCA--AUCUA-UUUCUUUAUC	4	0.999961952797637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN5508_c0_g1_4014_TPlot.pdf
TRINITY_DN5508_c0_g1:4188	si_s814	TRINITY_DN5508_c0_g1	4177	4199	4188	-26.60	-17.50	0.657894736842105	13	1-7,4199-4193;8-19,4190-4179	x-x,4192-4191[BULt];20-21,4178-4177[UP3]	..((((((((((((..(((((((&)))))))--))))))))))))..	CGGUUGUUAGGGGGGUGGGUAGC&GUUACCU--UUUCUUAAUAAUGA	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN5508_c0_g1_4188_TPlot.pdf
TRINITY_DN5508_c0_g1:4189	si_a170	TRINITY_DN5508_c0_g1	4179	4198	4189	-33.40	-22.50	0.673652694610778	7.5	1-10,4198-4189;12-14,4187-4185;16-21,4184-4179	11-11,4188-4188[SIL];15-15,x-x[BULq]	((((((-(((.((((((((((&)))))))))).))).))))))	GUUGUU-AGGGGGGUGGGUAG&CUAUUCACCCGUCUAGAUAAU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN5508_c0_g1_4189_TPlot.pdf
TRINITY_DN5508_c1_g1:18	si_a786	TRINITY_DN5508_c1_g1	8	28	18	-26.60	-18.30	0.68796992481203	6.5	1-6,28-23;8-14,20-14;16-21,13-8	7-7,22-21[AILt];15-15,x-x[BULq]	((((((-(((((((..((((((&))))))-.))))))).))))))	GGAAGA-AGAAGAAGAAGAAGA&UCUUCU-AUUUUUCUAUUUUCC	2	0.999995490125337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5508_c1_g1_18_TPlot.pdf
TRINITY_DN5508_c1_g1:897	si_s694	TRINITY_DN5508_c1_g1	886	906	897	-23.90	-16.00	0.669456066945607	11	5-18,902-889	1-4,906-903[UP5];19-21,888-886[UP3]	...((((((((((((((....&....))))))))))))))...	UUUAUAAAUCGGCUAAUGUGG&UUUAAUUAGUCGAUUUAUUAG	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN5508_c1_g1_897_TPlot.pdf
TRINITY_DN55096_c0_g1:938	si_s642	TRINITY_DN55096_c0_g1	927	947	938	-38.60	-25.20	0.652849740932642	11	2-13,946-935	1-1,947-947[UP5];14-21,934-927[UP3]	........((((((((((((.&.))))))))))))........	CUGAAGAGGAGGGCGAGCGCG&GGCGUUUGCCCUCGAUACAAU	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN55096_c0_g1_938_TPlot.pdf
TRINITY_DN550_c1_g1:2068	si_a703	TRINITY_DN550_c1_g1	2057	2077	2068	-29.20	-19.70	0.674657534246575	12	4-15,2074-2063	1-3,2077-2075[UP5];16-21,2062-2057[UP3]	......((((((((((((...&...))))))))))))......	AAUGUCUGGAAUGUGCCAUUA&AACUGGUACAUUCCAAAAUAA	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN550_c1_g1_2068_TPlot.pdf
TRINITY_DN55102_c0_g1:283	si_a287	TRINITY_DN55102_c0_g1	272	292	283	-29.20	-19.60	0.671232876712329	9	1-13,292-280	14-21,279-272[UP3]	........(((((((((((((&)))))))))))))........	AUCAAGACAAUCUAAGCGAUC&GAUCGCUUGGAUUUAAAAAAG	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN55102_c0_g1_283_TPlot.pdf
TRINITY_DN55102_c0_g1:284	si_a286	TRINITY_DN55102_c0_g1	273	293	284	-28.30	-19.60	0.692579505300353	9	2-14,292-280	1-1,293-293[UP5];15-21,279-273[UP3]	.......(((((((((((((.&.))))))))))))).......	UCAAGACAAUCUAAGCGAUCG&AGAUCGCUUGGAUUUAAAAAA	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN55102_c0_g1_284_TPlot.pdf
TRINITY_DN55102_c0_g1:285	si_a285	TRINITY_DN55102_c0_g1	274	294	285	-28.30	-19.60	0.692579505300353	10	3-15,292-280	1-2,294-293[UP5];16-21,279-274[UP3]	......(((((((((((((..&..)))))))))))))......	CAAGACAAUCUAAGCGAUCGU&AAGAUCGCUUGGAUUUAAAAA	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN55102_c0_g1_285_TPlot.pdf
TRINITY_DN55102_c0_g1:352	si_a856	TRINITY_DN55102_c0_g1	341	361	352	-24.70	-17.70	0.716599190283401	7.5	2-17,360-345	1-1,361-361[UP5];18-21,344-341[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAUUGUAAUUGGAUUUUGAGA&ACUUGAAAUCCAAUUAUUAAA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN55102_c0_g1_352_TPlot.pdf
TRINITY_DN55102_c0_g1:353	si_a855	TRINITY_DN55102_c0_g1	342	362	353	-24.70	-17.70	0.716599190283401	8.5	3-18,360-345	1-2,362-361[UP5];19-21,344-342[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUUGUAAUUGGAUUUUGAGAU&AACUUGAAAUCCAAUUAUUAA	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN55102_c0_g1_353_TPlot.pdf
TRINITY_DN55102_c0_g1:355	si_a853	TRINITY_DN55102_c0_g1	344	364	355	-26.30	-20.20	0.768060836501901	5.5	1-3,364-362;5-20,360-345	4-4,361-361[SIL];21-21,344-344[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	UGUAAUUGGAUUUUGAGAUAG&CUAACUUGAAAUCCAAUUAUU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a853_TRINITY_DN55102_c0_g1_355_TPlot.pdf
TRINITY_DN55102_c0_g1:356	si_a852	TRINITY_DN55102_c0_g1	345	365	356	-28.80	-20.20	0.701388888888889	5.5	2-4,364-362;6-21,360-345	1-1,365-365[UP5];5-5,361-361[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GUAAUUGGAUUUUGAGAUAGG&GCUAACUUGAAAUCCAAUUAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN55102_c0_g1_356_TPlot.pdf
TRINITY_DN5510_c0_g1:294	si_s15	TRINITY_DN5510_c0_g1	283	303	294	-25.60	-16.90	0.66015625	8	1-17,303-287	18-21,286-283[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAAUAUCGGUAUGGUGGUAAU&AUUAUUACUAUAUUGAUUGCA	2	0.990833485012825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN5510_c0_g1_294_TPlot.pdf
TRINITY_DN5510_c0_g1:295	si_s14	TRINITY_DN5510_c0_g1	284	304	295	-25.30	-18.00	0.711462450592885	7	1-18,304-287	19-21,286-284[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAUAUCGGUAUGGUGGUAAUA&UAUUAUUACUAUAUUGAUUGC	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN5510_c0_g1_295_TPlot.pdf
TRINITY_DN5510_c0_g1:296	si_s13	TRINITY_DN5510_c0_g1	285	305	296	-22.90	-18.10	0.790393013100437	7	2-19,304-287	1-1,305-305[UP5];20-21,286-285[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AUAUCGGUAUGGUGGUAAUAC&UUAUUAUUACUAUAUUGAUUG	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN5510_c0_g1_296_TPlot.pdf
TRINITY_DN5510_c0_g1:297	si_s12	TRINITY_DN5510_c0_g1	286	306	297	-22.80	-18.10	0.793859649122807	8	3-20,304-287	1-2,306-305[UP5];21-21,286-286[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UAUCGGUAUGGUGGUAAUACG&CUUAUUAUUACUAUAUUGAUU	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN5510_c0_g1_297_TPlot.pdf
TRINITY_DN5510_c0_g1:298	si_s11	TRINITY_DN5510_c0_g1	287	307	298	-23.60	-18.10	0.766949152542373	8.5	4-21,304-287	1-3,307-305[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUCGGUAUGGUGGUAAUACGA&ACUUAUUAUUACUAUAUUGAU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN5510_c0_g1_298_TPlot.pdf
TRINITY_DN5510_c0_g1:299	si_s10	TRINITY_DN5510_c0_g1	288	308	299	-23.80	-17.10	0.718487394957983	10.5	5-21,304-288	1-4,308-305[UP5]	(((((((((((((((((....&....)))))))))))))))))	UCGGUAUGGUGGUAAUACGAG&UACUUAUUAUUACUAUAUUGA	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN5510_c0_g1_299_TPlot.pdf
TRINITY_DN5510_c0_g1:300	si_s9	TRINITY_DN5510_c0_g1	289	309	300	-22.90	-15.10	0.65938864628821	12.5	6-21,304-289	1-5,309-305[UP5]	((((((((((((((((.....&.....))))))))))))))))	CGGUAUGGUGGUAAUACGAGG&UUACUUAUUAUUACUAUAUUG	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN5510_c0_g1_300_TPlot.pdf
TRINITY_DN5510_c0_g1:368	si_s493	TRINITY_DN5510_c0_g1	356	377	368	-19.80	-13.00	0.656565656565657	4	1-13,377-365;14-15,363-362;18-21,359-356	x-x,364-364[BULt];16-17,361-360[SIL]	((((..((.(((((((((((((&)))))))))))))-))..))))	UUGUGAUGUUUUAUAUUUAAGU&AUUUAAAUAUAAA-CAAAACAA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN5510_c0_g1_368_TPlot.pdf
TRINITY_DN5510_c0_g1:369	si_s492	TRINITY_DN5510_c0_g1	357	378	369	-20.10	-13.40	0.666666666666667	4	1-14,378-365;15-16,363-362;19-21,359-357	x-x,364-364[BULt];17-18,361-360[SIL]	(((..((.((((((((((((((&))))))))))))))-))..)))	UGUGAUGUUUUAUAUUUAAGUA&UAUUUAAAUAUAAA-CAAAACA	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN5510_c0_g1_369_TPlot.pdf
TRINITY_DN5510_c0_g1:370	si_s491	TRINITY_DN5510_c0_g1	358	379	370	-19.50	-12.80	0.656410256410256	4	1-15,379-365;16-17,363-362;20-21,359-358	x-x,364-364[BULt];18-19,361-360[SIL]	((..((.(((((((((((((((&)))))))))))))))-))..))	GUGAUGUUUUAUAUUUAAGUAA&UUAUUUAAAUAUAAA-CAAAAC	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN5510_c0_g1_370_TPlot.pdf
TRINITY_DN5510_c0_g1:371	si_s490	TRINITY_DN5510_c0_g1	359	380	371	-17.80	-12.50	0.702247191011236	5	1-16,380-365;17-18,363-362	x-x,364-364[BULt];19-21,361-359[UP3]	...((.((((((((((((((((&))))))))))))))))-))...	UGAUGUUUUAUAUUUAAGUAAA&UUUAUUUAAAUAUAAA-CAAAA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN5510_c0_g1_371_TPlot.pdf
TRINITY_DN5510_c0_g1:372	si_s489	TRINITY_DN5510_c0_g1	360	381	372	-17.90	-12.50	0.698324022346369	5	2-17,380-365;18-19,363-362	1-1,381-381[UP5];x-x,364-364[BULt];20-21,361-360[UP3]	..((.((((((((((((((((.&.))))))))))))))))-))..	GAUGUUUUAUAUUUAAGUAAAC&AUUUAUUUAAAUAUAAA-CAAA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN5510_c0_g1_372_TPlot.pdf
TRINITY_DN5510_c0_g1:373	si_s488	TRINITY_DN5510_c0_g1	361	382	373	-18.30	-12.50	0.683060109289617	6	3-18,380-365;19-20,363-362	1-2,382-381[UP5];x-x,364-364[BULt];21-21,361-361[UP3]	.((.((((((((((((((((..&..))))))))))))))))-)).	AUGUUUUAUAUUUAAGUAAACU&UAUUUAUUUAAAUAUAAA-CAA	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN5510_c0_g1_373_TPlot.pdf
TRINITY_DN5510_c0_g1:374	si_s487	TRINITY_DN5510_c0_g1	362	383	374	-18.40	-12.30	0.668478260869565	7	4-19,380-365;20-21,363-362	1-3,383-381[UP5];x-x,364-364[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	UGUUUUAUAUUUAAGUAAACUA&AUAUUUAUUUAAAUAUAAA-CA	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN5510_c0_g1_374_TPlot.pdf
TRINITY_DN5510_c0_g1:375	si_s486	TRINITY_DN5510_c0_g1	364	384	375	-18.10	-11.90	0.657458563535912	9	5-20,380-365	1-4,384-381[UP5];21-21,364-364[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUUUAUAUUUAAGUAAACUAU&UAUAUUUAUUUAAAUAUAAAC	3	0.999775402880348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN5510_c0_g1_375_TPlot.pdf
TRINITY_DN5510_c0_g1:376	si_s485	TRINITY_DN5510_c0_g1	365	385	376	-18.10	-11.90	0.657458563535912	10	6-21,380-365	1-5,385-381[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUAUAUUUAAGUAAACUAUU&CUAUAUUUAUUUAAAUAUAAA	3	0.999998392297536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN5510_c0_g1_376_TPlot.pdf
TRINITY_DN5512_c0_g1:45	si_a642	TRINITY_DN5512_c0_g1	34	54	45	-25.90	-18.50	0.714285714285714	6	1-12,54-43;15-21,40-34	13-14,42-41[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	CUGAUAUUAUACUCAAGAGGG&UUUUUUUGAGUAAUAUAUCGG	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5512_c0_g1_45_TPlot.pdf
TRINITY_DN5512_c0_g1:46	si_a641	TRINITY_DN5512_c0_g1	35	55	46	-23.60	-15.50	0.656779661016949	7.5	2-13,54-43;16-21,40-35	1-1,55-55[UP5];14-15,42-41[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UGAUAUUAUACUCAAGAGGGC&AUUUUUUUGAGUAAUAUAUCG	3	0.999993884044885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN5512_c0_g1_46_TPlot.pdf
TRINITY_DN5512_c0_g1:55	si_s311	TRINITY_DN5512_c0_g1	45	65	55	-30.60	-20.20	0.660130718954248	8	1-4,65-62;6-14,59-51;16-19,50-47	5-5,61-60[AILt];15-15,x-x[BULq];20-21,46-45[UP3]	..((((-(((((((((..((((&))))-.))))))))).))))..	CUCAAG-AGGGCAGAAGGUUUC&GAAA-AUUCUGUCCUUCUUGUU	3	0.999976733936909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN5512_c0_g1_55_TPlot.pdf
TRINITY_DN55136_c0_g1:293	si_a618	TRINITY_DN55136_c0_g1	282	302	293	-33.10	-22.30	0.673716012084592	8	2-17,301-286	1-1,302-302[UP5];18-21,285-282[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGGAGGUACGCUUAGUUGAUC&AAUCGACUAGGCGUAUUAUGU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a618_TRINITY_DN55136_c0_g1_293_TPlot.pdf
TRINITY_DN55136_c0_g1:294	si_a617	TRINITY_DN55136_c0_g1	283	303	294	-34.00	-22.30	0.655882352941176	9	3-18,301-286	1-2,303-302[UP5];19-21,285-283[UP3]	...((((((((((((((((..&..))))))))))))))))...	GGAGGUACGCUUAGUUGAUCA&CAAUCGACUAGGCGUAUUAUG	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a617_TRINITY_DN55136_c0_g1_294_TPlot.pdf
TRINITY_DN55136_c0_g1:295	si_a616	TRINITY_DN55136_c0_g1	284	309	295	-34.70	-23.20	0.668587896253602	15	1-3,309-307;4-19,301-286	x-x,306-302[BULt];20-21,285-284[UP3]	..((((((((((((((((.....(((&)))-----))))))))))))))))..	GAGGUACGCUUAGUUGAUCAUAGUGG&CCA-----AUCGACUAGGCGUAUUAU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a616_TRINITY_DN55136_c0_g1_295_TPlot.pdf
TRINITY_DN55136_c0_g1:337	si_a118	TRINITY_DN55136_c0_g1	325	346	337	-30.70	-20.40	0.664495114006515	9	3-15,344-332;16-19,330-327	1-2,346-345[UP5];x-x,331-331[BULt];20-21,326-325[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	CGUGCUAAUAGAACGAGCUUUG&ACGAGCUUGUUUUAU-AGCAAU	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN55136_c0_g1_337_TPlot.pdf
TRINITY_DN55160_c0_g1:931	si_a15	TRINITY_DN55160_c0_g1	920	940	931	-26.20	-17.90	0.683206106870229	7.5	1-16,940-925	17-21,924-920[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAUCAAUGAAUGGGCUUUUU&AGAAAGCCUAUUUAUUUUUAG	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN55160_c0_g1_931_TPlot.pdf
TRINITY_DN55160_c0_g1:936	si_a10	TRINITY_DN55160_c0_g1	925	945	936	-29.50	-19.20	0.650847457627119	10	5-21,941-925	1-4,945-942[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAUGAAUGGGCUUUUUUGAAU&UGAAGAGAAAGCCUAUUUAUU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN55160_c0_g1_936_TPlot.pdf
TRINITY_DN55175_c0_g1:226	si_s430	TRINITY_DN55175_c0_g1	216	235	226	-21.30	-14.90	0.699530516431925	4.5	1-12,235-224;14-18,223-219	13-13,x-x[BULq];19-21,218-216[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	AAUUGUGU-AUUAUUGUUAUA&UAUAACAAUAAUUACAUAUUA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN55175_c0_g1_226_TPlot.pdf
TRINITY_DN55175_c0_g1:227	si_s429	TRINITY_DN55175_c0_g1	217	236	227	-21.10	-14.90	0.706161137440758	4.5	2-13,235-224;15-19,223-219	1-1,236-236[UP5];14-14,x-x[BULq];20-21,218-217[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	AUUGUGU-AUUAUUGUUAUAG&AUAUAACAAUAAUUACAUAUU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN55175_c0_g1_227_TPlot.pdf
TRINITY_DN55182_c0_g1:429	si_a110	TRINITY_DN55182_c0_g1	418	439	429	-27.80	-19.22	0.69136690647482	11	1-4,439-436;8-18,431-421	5-7,435-432[AILt];19-21,420-418[UP3]	...(((((((((((....((((&))))-...)))))))))))...	GGCACAAGCUCGUAGGUCUAUC&GAUA-AAAUACGAGCUUGUUUU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN55182_c0_g1_429_TPlot.pdf
TRINITY_DN55185_c0_g1:304	si_a841	TRINITY_DN55185_c0_g1	293	313	304	-29.20	-19.00	0.650684931506849	8	4-19,310-295;21-21,293-293	1-3,313-311[UP5];20-20,294-294[SIL]	(.((((((((((((((((...&...)))))))))))))))).)	UGAAGUUAGCAAUUUUUAAAC&AAAUAGAAGUUGCUAACUUGA	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN55185_c0_g1_304_TPlot.pdf
TRINITY_DN55185_c0_g1:306	si_a839	TRINITY_DN55185_c0_g1	295	315	306	-26.50	-18.40	0.694339622641509	11	6-21,310-295	1-5,315-311[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGUUAGCAAUUUUUAAACAA&AAAAAUAGAAGUUGCUAACUU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN55185_c0_g1_306_TPlot.pdf
TRINITY_DN55191_c0_g1:253	si_a766	TRINITY_DN55191_c0_g1	237	262	253	-30.50	-22.60	0.740983606557377	12.5	1-10,262-253;11-21,247-237	x-x,252-248[BULt]	(((((((((((.....((((((((((&))))))))))-----)))))))))))	GGUUGAAUCAGAGACUUCAAAAACUC&GGGUUUUUGA-----UUGAUUCAACU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN55191_c0_g1_253_TPlot.pdf
TRINITY_DN55199_c0_g1:800	si_s818	TRINITY_DN55199_c0_g1	790	809	800	-23.70	-16.00	0.675105485232067	8.5	1-13,809-797;15-17,796-794	14-14,x-x[BULq];18-21,793-790[UP3]	....(((-(((((((((((((&))))))))))))).)))....	GGAAUCG-UAUUAGGGAAGGG&CCUUUUCUUAAUAAUGAAAAA	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN55199_c0_g1_800_TPlot.pdf
TRINITY_DN5519_c0_g1:1501	si_s318	TRINITY_DN5519_c0_g1	1490	1511	1501	-32.80	-22.80	0.695121951219512	9.5	2-2,1510-1510;4-9,1508-1503;10-20,1501-1491	1-1,1511-1511[UP5];3-3,1509-1509[SIL];x-x,1502-1502[BULt];21-21,1490-1490[UP3]	.(((((((((((.((((((.(.&.).))))))-))))))))))).	AGUUUGUGACGAUGGAGGAGGU&CUGUCCUUC-UUGUUACAAACA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN5519_c0_g1_1501_TPlot.pdf
TRINITY_DN551_c0_g1:1261	si_a489	TRINITY_DN551_c0_g1	1250	1270	1261	-27.70	-20.00	0.72202166064982	5.5	1-3,1270-1268;5-20,1266-1251	4-4,1267-1267[SIL];21-21,1250-1250[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	AGGAAAACGGCAUAUUUAAUA&UAUAGAAUAUGUCGUUUUUCG	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN551_c0_g1_1261_TPlot.pdf
TRINITY_DN551_c0_g1:1262	si_a488	TRINITY_DN551_c0_g1	1251	1271	1262	-26.40	-19.60	0.742424242424243	5	2-4,1270-1268;6-21,1266-1251	1-1,1271-1271[UP5];5-5,1267-1267[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GGAAAACGGCAUAUUUAAUAA&AUAUAGAAUAUGUCGUUUUUC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN551_c0_g1_1262_TPlot.pdf
TRINITY_DN55208_c0_g1:418	si_a200	TRINITY_DN55208_c0_g1	406	427	418	-29.20	-21.20	0.726027397260274	4.5	2-16,426-412;17-19,410-408	1-1,427-427[UP5];x-x,411-411[BULt];20-21,407-406[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	UUGUUAGAUUUAUUAGUGAACU&UGUUCACUAAUAAAUC-GACUA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN55208_c0_g1_418_TPlot.pdf
TRINITY_DN55208_c0_g1:474	si_s122	TRINITY_DN55208_c0_g1	463	484	474	-28.30	-20.20	0.713780918727915	4	1-3,484-482;4-13,480-471;15-21,469-463	x-x,481-481[BULt];14-14,470-470[SIL]	(((((((.((((((((((.(((&)))-)))))))))).)))))))	GAUUUGAGUCUUCUAUUUAUUC&GAA-AAAUAGAAGAGUUGAAUC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN55208_c0_g1_474_TPlot.pdf
TRINITY_DN55208_c0_g1:770	si_s439	TRINITY_DN55208_c0_g1	759	780	770	-21.50	-15.30	0.711627906976744	10	4-7,777-774;8-20,772-760	1-3,780-778[UP5];x-x,773-773[BULt];21-21,759-759[UP3]	.(((((((((((((.((((...&...))))-))))))))))))).	GGUUAUGUGUAAUAUUGUGGAU&AAUUACA-UAUUAUAUAUAACA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN55208_c0_g1_770_TPlot.pdf
TRINITY_DN5520_c0_g1:1100	si_s76	TRINITY_DN5520_c0_g1	1086	1109	1100	-23.60	-16.20	0.686440677966102	11.5	5-17,1105-1093;18-21,1089-1086	1-4,1109-1106[UP5];x-x,1092-1090[BULt]	((((...(((((((((((((....&....)))))))))))))---))))	GAGAAUAAAGGAAGGAAAAAUGCU&AUUUUUUUUCUUUCCUU---UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5520_c0_g1_1100_TPlot.pdf
TRINITY_DN5520_c0_g1:26	si_s78	TRINITY_DN5520_c0_g1	15	35	26	-26.20	-17.10	0.652671755725191	8.5	1-16,35-20	17-21,19-15[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAAAAGGGGAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5520_c0_g1_26_TPlot.pdf
TRINITY_DN5520_c0_g1:27	si_s77	TRINITY_DN5520_c0_g1	16	36	27	-25.50	-18.00	0.705882352941177	7.5	1-17,36-20	18-21,19-16[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAAAAAGGGGAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5520_c0_g1_27_TPlot.pdf
TRINITY_DN5520_c0_g1:29	si_s75	TRINITY_DN5520_c0_g1	18	38	29	-24.00	-18.00	0.75	8	3-19,36-20	1-2,38-37[UP5];20-21,19-18[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAGGGGAAGAAGAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999978531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5520_c0_g1_29_TPlot.pdf
TRINITY_DN5520_c0_g1:30	si_s74	TRINITY_DN5520_c0_g1	19	39	30	-25.00	-18.00	0.72	9	4-20,36-20	1-3,39-37[UP5];21-21,19-19[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGGGGAAGAAGAAGAAAAA&CUAUUUUUUUUCUUUCCUUUC	4	0.99999999997897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5520_c0_g1_30_TPlot.pdf
TRINITY_DN5520_c0_g1:32	si_s72	TRINITY_DN5520_c0_g1	21	42	32	-24.10	-18.80	0.780082987551867	7	1-4,42-39;6-21,36-21	5-5,38-37[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	AGGGGAAGAAGAAGAAAAAGAA&UUCU-AUUUUUUUUCUUUCCUU	4	0.99998263567328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5520_c0_g1_32_TPlot.pdf
TRINITY_DN5520_c0_g1:33	si_s71	TRINITY_DN5520_c0_g1	22	43	33	-25.70	-20.90	0.813229571984436	7	1-5,43-39;7-21,36-22	6-6,38-37[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	GGGGAAGAAGAAGAAAAAGAAG&CUUCU-AUUUUUUUUCUUUCCU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5520_c0_g1_33_TPlot.pdf
TRINITY_DN5520_c0_g1:34	si_s70	TRINITY_DN5520_c0_g1	23	44	34	-25.80	-19.80	0.767441860465116	7	2-6,43-39;8-21,36-23	1-1,44-44[UP5];7-7,38-37[AILt]	((((((((((((((..(((((.&.)))))-.))))))))))))))	GGGAAGAAGAAGAAAAAGAAGA&ACUUCU-AUUUUUUUUCUUUCC	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5520_c0_g1_34_TPlot.pdf
TRINITY_DN5520_c0_g1:35	si_s84	TRINITY_DN5520_c0_g1	24	44	35	-32.30	-22.30	0.690402476780186	6	1-5,44-40;8-20,37-25	6-7,39-38[SIL];21-21,24-24[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	GGAAGAAGAAGAAAAAGAAGA&UCUUUCCUUUCUUCUUCUUCG	2	0.999999987327397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5520_c0_g1_35_TPlot.pdf
TRINITY_DN5520_c0_g1:36	si_s83	TRINITY_DN5520_c0_g1	25	45	36	-30.90	-22.60	0.731391585760518	5	1-6,45-40;9-21,37-25	7-8,39-38[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAAGAAGAAAAAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999993529795739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5520_c0_g1_36_TPlot.pdf
TRINITY_DN5520_c0_g1:5031	si_a632	TRINITY_DN5520_c0_g1	5020	5041	5031	-26.10	-17.40	0.666666666666667	5	2-6,5040-5036;7-21,5034-5020	1-1,5041-5041[UP5];x-x,5035-5035[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	AUUUGAAGAAAUCGAUCAUAAA&AUUAUG-UCGAUUUUUUUGAGU	4	0.99999997551886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN5520_c0_g1_5031_TPlot.pdf
TRINITY_DN55215_c0_g1:74	si_a486	TRINITY_DN55215_c0_g1	62	83	74	-24.90	-17.10	0.686746987951807	5	2-14,82-70;16-16,68-68;17-21,66-62	1-1,83-83[UP5];15-15,69-69[SIL];x-x,67-67[BULt]	(((((.(.(((((((((((((.&.))))))))))))).)-)))))	AAAGCUGUCGUAUUCUAUGUAU&UUAUAUAGAAUAUGUC-GUUUU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN55215_c0_g1_74_TPlot.pdf
TRINITY_DN55218_c0_g1:661	si_s64	TRINITY_DN55218_c0_g1	650	670	661	-24.10	-16.50	0.684647302904564	6	1-9,670-662;12-20,659-651	10-11,661-660[SIL];21-21,650-650[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UAAAAAAAUAACAGUUGCUGA&UUAGCAACUUCUAUUUUUUUU	2	0.999936891661079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN55218_c0_g1_661_TPlot.pdf
TRINITY_DN55229_c0_g1:1230	si_s888	TRINITY_DN55229_c0_g1	1219	1239	1230	-26.80	-18.20	0.67910447761194	13.5	7-11,1233-1229;13-21,1227-1219	1-6,1239-1234[UP5];12-12,1228-1228[SIL]	(((((((((.(((((......&......))))).)))))))))	AAGAGAGAGGCUAUUAUGAGG&AAAAUAAAUAGGCUUUCUCUU	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN55229_c0_g1_1230_TPlot.pdf
TRINITY_DN55229_c0_g1:1248	si_s80	TRINITY_DN55229_c0_g1	1236	1257	1248	-28.20	-20.30	0.719858156028369	6.5	1-10,1257-1248;12-21,1245-1236	11-11,1247-1246[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	GAGGAGGAGACUGGAAGAAAAA&UUUUUCUUUC-CUUUCUUCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN55229_c0_g1_1248_TPlot.pdf
TRINITY_DN55229_c0_g1:1253	si_s72	TRINITY_DN55229_c0_g1	1239	1262	1253	-24.10	-16.30	0.676348547717842	7.5	1-4,1262-1259;6-15,1257-1248;16-21,1244-1239	5-5,1258-1258[SIL];x-x,1247-1245[BULt]	((((((...((((((((((.((((&)))).))))))))))---))))))	GAGGAGACUGGAAGAAAAAAAGAA&UUCUAUUUUUUUUCU---UUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN55229_c0_g1_1253_TPlot.pdf
TRINITY_DN55231_c0_g1:276	si_a58	TRINITY_DN55231_c0_g1	265	285	276	-34.60	-23.30	0.673410404624277	8.5	2-2,284-284;4-11,282-275;14-19,272-267	1-1,285-285[UP5];3-3,283-283[SIL];12-13,274-273[SIL];20-21,266-265[UP3]	..((((((..((((((((.(.&.).))))))))..))))))..	AAUGAAGGUCGCGAGUCGUCA&AGUCGACUCGCUUCUUUCAAA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN55231_c0_g1_276_TPlot.pdf
TRINITY_DN5523_c0_g1:506	si_s79	TRINITY_DN5523_c0_g1	491	515	506	-26.20	-19.20	0.732824427480916	9	3-15,513-501;16-21,496-491	1-2,515-514[UP5];x-x,500-497[BULt]	((((((....(((((((((((((..&..)))))))))))))----))))))	AAGGAGUUCAGAAGGAAAGAAGACU&UUUUUUCUUUCCUUU----CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5523_c0_g1_506_TPlot.pdf
TRINITY_DN5523_c0_g1:777	si_s68	TRINITY_DN5523_c0_g1	766	787	777	-23.10	-16.30	0.705627705627706	7	2-8,786-780;10-21,777-766	1-1,787-787[UP5];9-9,779-778[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	GAAGAAAGAGAACAAGAAGUUA&CAACUUCU-AUUUUUUUUCUUU	3	0.999999999773328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5523_c0_g1_777_TPlot.pdf
TRINITY_DN5525_c0_g1:1033	si_s79	TRINITY_DN5525_c0_g1	1021	1042	1033	-26.20	-17.80	0.679389312977099	9	1-11,1042-1032;12-13,1030-1029;15-19,1027-1023	x-x,1031-1031[BULt];14-14,1028-1028[SIL];20-21,1022-1021[UP3]	..(((((.((.(((((((((((&)))))))))))-)).)))))..	AUGGAGAUGGUGAAGGAAGAGA&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5525_c0_g1_1033_TPlot.pdf
TRINITY_DN5525_c0_g1:1036	si_s76	TRINITY_DN5525_c0_g1	1024	1045	1036	-23.60	-16.10	0.682203389830509	9	3-14,1043-1032;15-16,1030-1029;18-21,1027-1024	1-2,1045-1044[UP5];x-x,1031-1031[BULt];17-17,1028-1028[SIL]	((((.((.((((((((((((..&..))))))))))))-)).))))	GAGAUGGUGAAGGAAGAGAACU&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5525_c0_g1_1036_TPlot.pdf
TRINITY_DN5525_c0_g1:1212	si_s93	TRINITY_DN5525_c0_g1	1201	1221	1212	-34.80	-22.80	0.655172413793104	8.5	2-10,1220-1212;12-17,1210-1205	1-1,1221-1221[UP5];11-11,1211-1211[SIL];18-21,1204-1201[UP3]	....((((((.(((((((((.&.))))))))).))))))....	AAAACGAGGCAGAGAAGAAGG&UCUUCUUCUUCGCUUCGGAUU	3	0.999999999999938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5525_c0_g1_1212_TPlot.pdf
TRINITY_DN5525_c0_g1:1213	si_s92	TRINITY_DN5525_c0_g1	1202	1222	1213	-34.90	-24.40	0.699140401146132	7.5	1-11,1222-1212;13-18,1210-1205	12-12,1211-1211[SIL];19-21,1204-1202[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AAACGAGGCAGAGAAGAAGGA&UUCUUCUUCUUCGCUUCGGAU	2	0.999520101235378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5525_c0_g1_1213_TPlot.pdf
TRINITY_DN5525_c0_g1:1214	si_s91	TRINITY_DN5525_c0_g1	1203	1223	1214	-34.70	-25.30	0.729106628242075	5.5	1-12,1223-1212;14-19,1210-1205	13-13,1211-1211[SIL];20-21,1204-1203[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AACGAGGCAGAGAAGAAGGAA&UUUCUUCUUCUUCGCUUCGGA	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5525_c0_g1_1214_TPlot.pdf
TRINITY_DN5525_c0_g1:1215	si_s90	TRINITY_DN5525_c0_g1	1204	1224	1215	-35.30	-28.20	0.798866855524079	4	1-13,1224-1212;15-20,1210-1205	14-14,1211-1211[SIL];21-21,1204-1204[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	ACGAGGCAGAGAAGAAGGAAG&CUUUCUUCUUCUUCGCUUCGG	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5525_c0_g1_1215_TPlot.pdf
TRINITY_DN5525_c0_g1:1216	si_s89	TRINITY_DN5525_c0_g1	1205	1225	1216	-35.30	-28.10	0.796033994334278	4	2-14,1224-1212;16-21,1210-1205	1-1,1225-1225[UP5];15-15,1211-1211[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	CGAGGCAGAGAAGAAGGAAGA&CCUUUCUUCUUCUUCGCUUCG	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5525_c0_g1_1216_TPlot.pdf
TRINITY_DN5525_c0_g1:1217	si_s88	TRINITY_DN5525_c0_g1	1206	1226	1217	-34.80	-25.70	0.738505747126437	6	3-15,1224-1212;17-21,1210-1206	1-2,1226-1225[UP5];16-16,1211-1211[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GAGGCAGAGAAGAAGGAAGAA&UCCUUUCUUCUUCUUCGCUUC	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5525_c0_g1_1217_TPlot.pdf
TRINITY_DN5525_c0_g1:1218	si_s87	TRINITY_DN5525_c0_g1	1207	1227	1218	-32.90	-22.40	0.680851063829787	8	4-16,1224-1212;18-21,1210-1207	1-3,1227-1225[UP5];17-17,1211-1211[SIL]	((((.(((((((((((((...&...))))))))))))).))))	AGGCAGAGAAGAAGGAAGAAU&UUCCUUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5525_c0_g1_1218_TPlot.pdf
TRINITY_DN5525_c0_g1:1219	si_s86	TRINITY_DN5525_c0_g1	1208	1228	1219	-32.90	-21.60	0.656534954407295	10	5-17,1224-1212;19-21,1210-1208	1-4,1228-1225[UP5];18-18,1211-1211[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GGCAGAGAAGAAGGAAGAAUC&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5525_c0_g1_1219_TPlot.pdf
TRINITY_DN5525_c0_g1:1223	si_s82	TRINITY_DN5525_c0_g1	1212	1235	1223	-28.90	-19.44	0.672664359861592	11.5	1-7,1235-1229;9-21,1224-1212	8-8,1228-1225[AILt]	(((((((((((((....(((((((&)))))))---.)))))))))))))	GAGAAGAAGGAAGAAUCAGAGGAA&UUUCUUU---CCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5525_c0_g1_1223_TPlot.pdf
TRINITY_DN5525_c0_g1:1225	si_a785	TRINITY_DN5525_c0_g1	1214	1235	1225	-25.90	-17.10	0.66023166023166	7	2-7,1234-1229;8-15,1227-1220;17-21,1218-1214	1-1,1235-1235[UP5];x-x,1228-1228[BULt];16-16,1219-1219[SIL]	(((((.((((((((.((((((.&.))))))-)))))))).)))))	GAAGAAGGAAGAAUCAGAGGAA&CUCUUCU-AUUUUUCUAUUUUC	2	0.999999999993528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5525_c0_g1_1225_TPlot.pdf
TRINITY_DN5525_c0_g1:1234	si_s79	TRINITY_DN5525_c0_g1	1219	1245	1234	-26.20	-17.50	0.66793893129771	9	1-9,1245-1237;10-14,1234-1230;15-21,1225-1219	x-x,1236-1235[BULt];x-x,1229-1226[BULt]	(((((((....(((((..(((((((((&)))))))))--)))))----)))))))	AGGAAGAAUCAGAGGAAAAAGAAAAAA&UUUUUUCUU--UCCUU----UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5525_c0_g1_1234_TPlot.pdf
TRINITY_DN5525_c0_g1:1237	si_s78	TRINITY_DN5525_c0_g1	1220	1246	1237	-26.20	-17.60	0.67175572519084	9	1-10,1246-1237;11-15,1234-1230;16-21,1225-1220	x-x,1236-1235[BULt];x-x,1229-1226[BULt]	((((((....(((((..((((((((((&))))))))))--)))))----))))))	GGAAGAAUCAGAGGAAAAAGAAAAAAA&UUUUUUUCUU--UCCUU----UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5525_c0_g1_1237_TPlot.pdf
TRINITY_DN5525_c0_g1:1242	si_a786	TRINITY_DN5525_c0_g1	1232	1251	1242	-26.60	-18.80	0.706766917293233	3	1-6,1251-1246;8-14,1244-1238;16-21,1237-1232	7-7,1245-1245[SIL];15-15,x-x[BULq]	((((((-(((((((.((((((&)))))).))))))).))))))	GGAAAA-AGAAAAAAAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999994798484317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5525_c0_g1_1242_TPlot.pdf
TRINITY_DN5525_c0_g1:1243	si_s72	TRINITY_DN5525_c0_g1	1230	1252	1243	-24.10	-16.40	0.680497925311203	5.5	1-4,1252-1249;6-16,1247-1237;17-21,1234-1230	5-5,1248-1248[SIL];x-x,1236-1235[BULt]	(((((..(((((((((((.((((&)))).)))))))))))--)))))	GAGGAAAAAGAAAAAAAGAAGAA&UUCUAUUUUUUUUCUU--UCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5525_c0_g1_1243_TPlot.pdf
TRINITY_DN5525_c0_g1:1244	si_s71	TRINITY_DN5525_c0_g1	1231	1253	1244	-25.70	-18.20	0.708171206225681	5	1-5,1253-1249;7-17,1247-1237;18-21,1234-1231	6-6,1248-1248[SIL];x-x,1236-1235[BULt]	((((..(((((((((((.(((((&))))).)))))))))))--))))	AGGAAAAAGAAAAAAAGAAGAAG&CUUCUAUUUUUUUUCUU--UCCU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5525_c0_g1_1244_TPlot.pdf
TRINITY_DN5525_c0_g1:1245	si_s70	TRINITY_DN5525_c0_g1	1232	1254	1245	-25.80	-16.90	0.655038759689922	6	2-6,1253-1249;8-18,1247-1237;19-21,1234-1232	1-1,1254-1254[UP5];7-7,1248-1248[SIL];x-x,1236-1235[BULt]	(((..(((((((((((.(((((.&.))))).)))))))))))--)))	GGAAAAAGAAAAAAAGAAGAAGA&ACUUCUAUUUUUUUUCUU--UCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5525_c0_g1_1245_TPlot.pdf
TRINITY_DN5525_c0_g1:1247	si_s68	TRINITY_DN5525_c0_g1	1236	1256	1247	-23.10	-15.10	0.653679653679654	8	4-8,1253-1249;10-21,1247-1236	1-3,1256-1254[UP5];9-9,1248-1248[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAAGAAAAAAAGAAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5525_c0_g1_1247_TPlot.pdf
TRINITY_DN5525_c0_g1:1709	si_s76	TRINITY_DN5525_c0_g1	1698	1718	1709	-23.60	-15.70	0.665254237288135	17	9-19,1710-1700	1-8,1718-1711[UP5];20-21,1699-1698[UP3]	..(((((((((((........&........)))))))))))..	UUGAAAGGAAAGAUGUACUUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5525_c0_g1_1709_TPlot.pdf
TRINITY_DN5525_c0_g1:1710	si_s75	TRINITY_DN5525_c0_g1	1699	1719	1710	-24.00	-15.70	0.654166666666667	18	10-20,1710-1700	1-9,1719-1711[UP5];21-21,1699-1699[UP3]	.(((((((((((.........&.........))))))))))).	UGAAAGGAAAGAUGUACUUGU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5525_c0_g1_1710_TPlot.pdf
TRINITY_DN5525_c0_g1:435	si_s868	TRINITY_DN5525_c0_g1	424	444	435	-35.90	-24.20	0.674094707520891	8	2-9,443-436;12-20,433-425	1-1,444-444[UP5];10-11,435-434[SIL];21-21,424-424[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CUGGUUCUGAAUUCGGUAGGG&ACCUACCGGUCUUAGAACUAA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN5525_c0_g1_435_TPlot.pdf
TRINITY_DN5525_c0_g1:567	si_a323	TRINITY_DN5525_c0_g1	556	575	567	-26.80	-18.30	0.682835820895522	8.5	2-5,574-571;8-21,569-556	1-1,575-575[UP5];6-7,570-570[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	AGGGAAUAAGAGAAG-GUGGU&UCCAUGAUUUUUUUAUUCCUU	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN5525_c0_g1_567_TPlot.pdf
TRINITY_DN5525_c0_g1:593	si_a466	TRINITY_DN5525_c0_g1	583	602	593	-21.50	-14.30	0.665116279069767	4.5	1-13,602-590;16-21,588-583	14-15,589-589[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	AUAAUAC-UGCAUAUUAUGUA&UAUAUAAUAUGUAAUUAUUGU	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN5525_c0_g1_593_TPlot.pdf
TRINITY_DN5525_c0_g1:594	si_a465	TRINITY_DN5525_c0_g1	581	603	594	-20.90	-15.20	0.727272727272727	4.5	1-14,603-590;15-20,587-582	x-x,589-588[BULt];21-21,581-581[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	AAAUAAUACUGCAUAUUAUGUAU&AUAUAUAAUAUGUA--AUUAUUG	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN5525_c0_g1_594_TPlot.pdf
TRINITY_DN5525_c0_g1:595	si_a464	TRINITY_DN5525_c0_g1	582	604	595	-19.60	-14.80	0.755102040816326	4.5	2-15,603-590;16-21,587-582	1-1,604-604[UP5];x-x,589-588[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	AAUAAUACUGCAUAUUAUGUAUU&UAUAUAUAAUAUGUA--AUUAUU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN5525_c0_g1_595_TPlot.pdf
TRINITY_DN5525_c0_g1:596	si_a463	TRINITY_DN5525_c0_g1	583	605	596	-19.70	-13.90	0.705583756345178	6.5	3-16,603-590;17-21,587-583	1-2,605-604[UP5];x-x,589-588[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	AUAAUACUGCAUAUUAUGUAUUU&UUAUAUAUAAUAUGUA--AUUAU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5525_c0_g1_596_TPlot.pdf
TRINITY_DN5525_c0_g1:597	si_a462	TRINITY_DN5525_c0_g1	586	607	597	-21.20	-13.80	0.650943396226415	9.5	1-2,607-606;4-17,603-590	3-3,605-604[AILt];18-21,589-586[UP3]	....((((((((((((((..((&))-.))))))))))))))....	AUACUGCAUAUUAUGUAUUUAC&GU-UAUAUAUAAUAUGUAAUUA	3	0.999962937540519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN5525_c0_g1_597_TPlot.pdf
TRINITY_DN5525_c0_g1:598	si_a461	TRINITY_DN5525_c0_g1	587	608	598	-21.50	-14.00	0.651162790697674	9.5	2-3,607-606;5-18,603-590	1-1,608-608[UP5];4-4,605-604[AILt];19-21,589-587[UP3]	...((((((((((((((..((.&.))-.))))))))))))))...	UACUGCAUAUUAUGUAUUUACU&UGU-UAUAUAUAAUAUGUAAUU	3	0.999973729176639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN5525_c0_g1_598_TPlot.pdf
TRINITY_DN5525_c0_g1:784	si_s87	TRINITY_DN5525_c0_g1	773	797	784	-32.90	-22.10	0.671732522796353	12.5	2-4,796-794;6-9,791-788;10-21,784-773	1-1,797-797[UP5];5-5,793-792[AILt];x-x,787-785[BULt]	((((((((((((...((((..(((.&.)))-.))))---))))))))))))	GGGCGAGGAAGAGACAGAAUUGGAC&UUCC-UUUCU---UCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5525_c0_g1_784_TPlot.pdf
TRINITY_DN5525_c0_g1:785	si_s313	TRINITY_DN5525_c0_g1	772	794	785	-30.80	-20.10	0.652597402597403	7.5	2-10,793-785;11-16,783-778;17-19,776-774	1-1,794-794[UP5];x-x,784-784[BULt];x-x,777-777[BULt];20-21,773-772[UP3]	..(((.((((((.(((((((((.&.)))))))))-))))))-)))..	AGGGCGAGGAAGAGACAGAAUUG&AAAUUCUGUC-CUUCUU-GUUAC	3	0.999999990212477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN5525_c0_g1_785_TPlot.pdf
TRINITY_DN5525_c0_g1:786	si_s312	TRINITY_DN5525_c0_g1	773	795	786	-29.00	-20.10	0.693103448275862	8.5	3-11,793-785;12-17,783-778;18-20,776-774	1-2,795-794[UP5];x-x,784-784[BULt];x-x,777-777[BULt];21-21,773-773[UP3]	.(((.((((((.(((((((((..&..)))))))))-))))))-))).	GGGCGAGGAAGAGACAGAAUUGG&AAAAUUCUGUC-CUUCUU-GUUA	2	0.999170182561266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN5525_c0_g1_786_TPlot.pdf
TRINITY_DN5525_c0_g1:788	si_s86	TRINITY_DN5525_c0_g1	774	798	788	-32.90	-21.80	0.662613981762918	14	3-5,796-794;7-10,791-788;11-21,784-774	1-2,798-797[UP5];6-6,793-792[AILt];x-x,787-785[BULt]	(((((((((((...((((..(((..&..)))-.))))---)))))))))))	GGCGAGGAAGAGACAGAAUUGGACG&UUUCC-UUUCU---UCUUCUUCGCU	2	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5525_c0_g1_788_TPlot.pdf
TRINITY_DN5525_c0_g1:907	si_s93	TRINITY_DN5525_c0_g1	895	919	907	-34.80	-23.30	0.669540229885058	12	1-6,919-914;7-11,910-906;12-20,904-896	x-x,913-911[BULt];x-x,905-905[BULt];21-21,895-895[UP3]	.(((((((((.(((((...((((((&))))))---)))))-))))))))).	CAUCUGAGGCUGAGGAAAAAGAGGA&UCUUCU---UCUUC-GCUUCGGAUU	3	0.999999999818578	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5525_c0_g1_907_TPlot.pdf
TRINITY_DN5525_c0_g1:908	si_s92	TRINITY_DN5525_c0_g1	896	920	908	-34.90	-23.50	0.673352435530086	12	2-7,919-914;8-12,910-906;13-21,904-896	1-1,920-920[UP5];x-x,913-911[BULt];x-x,905-905[BULt]	(((((((((.(((((...((((((.&.))))))---)))))-)))))))))	AUCUGAGGCUGAGGAAAAAGAGGAG&UUCUUCU---UCUUC-GCUUCGGAU	3	0.99999999990116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5525_c0_g1_908_TPlot.pdf
TRINITY_DN5525_c0_g1:909	si_s91	TRINITY_DN5525_c0_g1	897	921	909	-34.70	-24.10	0.694524495677233	11	1-8,921-914;9-13,910-906;14-21,904-897	x-x,913-911[BULt];x-x,905-905[BULt]	((((((((.(((((...((((((((&))))))))---)))))-))))))))	UCUGAGGCUGAGGAAAAAGAGGAGA&UUUCUUCU---UCUUC-GCUUCGGA	2	0.999940699237118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5525_c0_g1_909_TPlot.pdf
TRINITY_DN5525_c0_g1:910	si_s90	TRINITY_DN5525_c0_g1	898	924	910	-35.30	-23.90	0.677053824362606	14	1-9,924-916;10-14,910-906;15-21,904-898	x-x,915-911[BULt];x-x,905-905[BULt]	(((((((.(((((.....(((((((((&)))))))))-----)))))-)))))))	CUGAGGCUGAGGAAAAAGAGGAGAAAG&CUUUCUUCU-----UCUUC-GCUUCGG	3	0.99999999996945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5525_c0_g1_910_TPlot.pdf
TRINITY_DN5525_c0_g1:914	si_s77	TRINITY_DN5525_c0_g1	900	923	914	-25.50	-16.70	0.654901960784314	10	1-11,923-913;12-16,910-906;18-21,903-900	x-x,912-911[BULt];17-17,905-904[AILt]	((((..(((((..(((((((((((&)))))))))))--)))))-.))))	GAGGCUGAGGAAAAAGAGGAGAAA&UUUUUUUUCUU--UCCUU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5525_c0_g1_914_TPlot.pdf
TRINITY_DN5525_c0_g1:919	si_s72	TRINITY_DN5525_c0_g1	906	929	919	-24.10	-15.80	0.655601659751037	9.5	1-4,929-926;6-16,923-913;17-21,910-906	5-5,925-924[AILt];x-x,912-911[BULt]	(((((..(((((((((((..((((&))))-.)))))))))))--)))))	GAGGAAAAAGAGGAGAAAGAAGAA&UUCU-AUUUUUUUUCUU--UCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5525_c0_g1_919_TPlot.pdf
TRINITY_DN5525_c0_g1:920	si_a786	TRINITY_DN5525_c0_g1	908	928	920	-26.60	-17.70	0.665413533834586	6	1-6,928-923;8-14,922-916;16-21,913-908	7-7,x-x[BULq];15-15,915-914[AILt]	((((((..(((((((-((((((&)))))).)))))))-.))))))	GGAAAAAGAGGAGAA-AGAAGA&UCUUCUAUUUUUCU-AUUUUCC	4	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5525_c0_g1_920_TPlot.pdf
TRINITY_DN5525_c0_g3:5343	si_a80	TRINITY_DN5525_c0_g3	5332	5353	5343	-22.10	-15.50	0.701357466063348	4.5	1-9,5353-5345;10-12,5343-5341;14-21,5339-5332	x-x,5344-5344[BULt];13-13,5340-5340[SIL]	((((((((.(((.(((((((((&)))))))))-))).))))))))	UUUUCUUGCUAAUUGAAAAGCA&UGUUUUUCA-UUAUUAAGAAAA	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN5525_c0_g3_5343_TPlot.pdf
TRINITY_DN55262_c0_g1:275	si_s68	TRINITY_DN55262_c0_g1	264	283	275	-23.10	-16.00	0.692640692640693	5.5	1-2,283-282;4-7,280-277;9-21,276-264	3-3,281-281[SIL];8-8,x-x[BULq]	(((((((((((((-((((.((&)).)))).)))))))))))))	GAAGAGAGAAAAU-GAAGGUG&CAACUUCUAUUUUUUUUCUUU	4	0.99999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN55262_c0_g1_275_TPlot.pdf
TRINITY_DN55265_c0_g1:168	si_s655	TRINITY_DN55265_c0_g1	157	177	168	-37.20	-24.70	0.663978494623656	9	3-16,175-162	1-2,177-176[UP5];17-21,161-157[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGUAAAUCCCCCGAUUGUGAC&GAUACAAUCGGGGGAUCGAAU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s655_TRINITY_DN55265_c0_g1_168_TPlot.pdf
TRINITY_DN5526_c0_g1:245	si_s827	TRINITY_DN5526_c0_g1	234	254	245	-21.90	-14.40	0.657534246575343	11	3-10,252-245;13-19,242-236	1-2,254-253[UP5];11-12,244-243[SIL];20-21,235-234[UP3]	..(((((((..((((((((..&..))))))))..)))))))..	UACAGGUUGGGUUUCAUUGGC&AAUAAUGAAAAACAAUUUGAA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN5526_c0_g1_245_TPlot.pdf
TRINITY_DN5526_c0_g1:247	si_s825	TRINITY_DN5526_c0_g1	236	256	247	-21.30	-14.40	0.676056338028169	11	5-12,252-245;15-21,242-236	1-4,256-253[UP5];13-14,244-243[SIL]	(((((((..((((((((....&....))))))))..)))))))	CAGGUUGGGUUUCAUUGGCAA&UUAAUAAUGAAAAACAAUUUG	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN5526_c0_g1_247_TPlot.pdf
TRINITY_DN5526_c0_g1:248	si_a851	TRINITY_DN5526_c0_g1	237	255	248	-29.30	-19.80	0.675767918088737	7.5	1-6,255-250;9-20,249-238	7-8,x-x[BULq];21-21,237-237[UP3]	.((((((((((((--((((((&))))))..)))))))))))).	AGGUUGGGUUUCA--UUGGCA&UGCUAACUUGAAAUCCAAUUA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a851_TRINITY_DN5526_c0_g1_248_TPlot.pdf
TRINITY_DN5527_c0_g1:637	si_s324	TRINITY_DN5527_c0_g1	626	646	637	-28.70	-19.80	0.689895470383275	6.5	1-11,646-636;14-15,633-632;17-21,630-626	12-13,635-634[SIL];16-16,631-631[SIL]	(((((.((..(((((((((((&)))))))))))..)).)))))	GUCGUUUGAAUGUGGCAAGAA&UUCUUGUUACAAACAUACGAU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s324_TRINITY_DN5527_c0_g1_637_TPlot.pdf
TRINITY_DN5528_c0_g1:4094	si_a771	TRINITY_DN5528_c0_g1	4083	4103	4094	-29.40	-19.40	0.659863945578231	8.5	2-13,4102-4091;15-17,4089-4087;19-21,4085-4083	1-1,4103-4103[UP5];14-14,4090-4090[SIL];18-18,4086-4086[SIL]	(((.(((.((((((((((((.&.)))))))))))).))).)))	GGACGAGAUGGGUCGGUCGAG&UUUGAUUGAUUCAACUCUUCU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN5528_c0_g1_4094_TPlot.pdf
TRINITY_DN5529_c0_g1:1050	si_s631	TRINITY_DN5529_c0_g1	1037	1059	1050	-36.00	-24.80	0.688888888888889	10.5	2-10,1058-1050;11-18,1046-1039;20-21,1038-1037	1-1,1059-1059[UP5];x-x,1049-1047[BULt];19-19,x-x[BULq]	((-((((((((...(((((((((.&.)))))))))---)))))))).))	GG-AGACGCCUCGAGCGAGAAGAA&AUCUUUUCGU---AGGCGUUUGCC	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN5529_c0_g1_1050_TPlot.pdf
TRINITY_DN5529_c0_g1:1054	si_s627	TRINITY_DN5529_c0_g1	1040	1072	1054	-36.10	-23.60	0.653739612188366	24	2-5,1071-1068;6-14,1058-1050;15-21,1046-1040	1-1,1072-1072[UP5];x-x,1067-1059[BULt];x-x,1049-1047[BULt]	(((((((...(((((((((.........((((.&.))))---------)))))))))---)))))))	GACGCCUCGAGCGAGAAGAAAAAGCUGUUCGCC&AGCGA---------UCUUUUCGU---AGGCGUU	2	0.998948805357577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN5529_c0_g1_1054_TPlot.pdf
TRINITY_DN5529_c0_g1:2288	si_a495	TRINITY_DN5529_c0_g1	2277	2298	2288	-31.90	-22.40	0.702194357366771	10.5	3-9,2296-2290;11-15,2287-2283;17-21,2281-2277	1-2,2298-2297[UP5];10-10,2289-2288[AILt];16-16,2282-2282[SIL]	(((((.(((((..(((((((..&..)))))))-.))))).)))))	GGAGGUCGAGACUGCGACAUCG&AUAUGUCGU-UUUUCGUCUUCC	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5529_c0_g1_2288_TPlot.pdf
TRINITY_DN5529_c0_g1:2359	si_a32	TRINITY_DN5529_c0_g1	2342	2368	2359	-35.90	-24.00	0.668523676880223	13	1-14,2368-2355;15-19,2348-2344	x-x,2354-2349[BULt];20-21,2343-2342[UP3]	..(((((......((((((((((((((&))))))))))))))------)))))..	CGCUGCCCACAAUGGUCUUGGGGCUGG&UUAGUUCUAAGACC------GGUAGGU	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN5529_c0_g1_2359_TPlot.pdf
TRINITY_DN5529_c0_g1:30	si_s727	TRINITY_DN5529_c0_g1	19	39	30	-33.80	-22.20	0.656804733727811	5	2-13,38-27;15-21,25-19	1-1,39-39[UP5];14-14,26-26[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UUCACUUUUCUAGAUGAUGUG&GAUAUUAUCUAGACGGGUGAA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s727_TRINITY_DN5529_c0_g1_30_TPlot.pdf
TRINITY_DN5529_c0_g1:636	si_a747	TRINITY_DN5529_c0_g1	622	645	636	-41.30	-27.00	0.653753026634383	8	1-6,645-640;8-10,638-636;11-12,634-633;13-19,631-625;20-21,623-622	7-7,639-639[SIL];x-x,635-635[BULt];x-x,632-632[BULt];x-x,624-624[BULt]	((.(((((((.((.(((.((((((&)))))).)))-))-)))))))-))	CCAAAAGGAGAGUCUCAAGGCCGG&CUGGCCAUGA-AC-CUCCUUU-GG	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN5529_c0_g1_636_TPlot.pdf
TRINITY_DN5529_c0_g1:798	si_s87	TRINITY_DN5529_c0_g1	787	807	798	-32.90	-21.70	0.659574468085106	8.5	1-14,807-794;17-18,791-790	15-16,793-792[SIL];19-21,789-787[UP3]	...((..((((((((((((((&))))))))))))))..))...	CUACGUUGGGGGAGAAGGGAA&UUCCUUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5529_c0_g1_798_TPlot.pdf
TRINITY_DN5529_c0_g1:799	si_s86	TRINITY_DN5529_c0_g1	788	808	799	-32.90	-21.80	0.662613981762918	8	2-15,807-794;18-19,791-790	1-1,808-808[UP5];16-17,793-792[SIL];20-21,789-788[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	UACGUUGGGGGAGAAGGGAAC&UUUCCUUUCUUCUUCUUCGCU	2	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5529_c0_g1_799_TPlot.pdf
TRINITY_DN5529_c0_g1:801	si_s84	TRINITY_DN5529_c0_g1	790	811	801	-32.30	-23.50	0.727554179566564	6.5	1-3,811-809;4-17,807-794;20-21,791-790	x-x,808-808[BULt];18-19,793-792[SIL]	((..((((((((((((((.(((&)))-))))))))))))))..))	CGUUGGGGGAGAAGGGAACAGA&UCU-UUCCUUUCUUCUUCUUCG	3	0.999998604714447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5529_c0_g1_801_TPlot.pdf
TRINITY_DN5529_c0_g1:805	si_s80	TRINITY_DN5529_c0_g1	794	815	805	-28.20	-20.70	0.734042553191489	10.5	4-7,812-809;8-21,807-794	1-3,815-813[UP5];x-x,808-808[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GGGGGAGAAGGGAACAGAGCGA&UUUUUCU-UUCCUUUCUUCUUC	2	0.999999920044325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5529_c0_g1_805_TPlot.pdf
TRINITY_DN5529_c0_g1:806	si_s79	TRINITY_DN5529_c0_g1	795	816	806	-26.20	-19.00	0.725190839694656	8	1-3,816-814;5-8,812-809;9-21,807-795	4-4,813-813[SIL];x-x,808-808[BULt]	(((((((((((((.((((.(((&))).))))-)))))))))))))	GGGGAGAAGGGAACAGAGCGAA&UUUUUUCU-UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5529_c0_g1_806_TPlot.pdf
TRINITY_DN5529_c0_g1:807	si_s78	TRINITY_DN5529_c0_g1	796	817	807	-26.20	-18.90	0.721374045801527	8	1-4,817-814;6-9,812-809;10-21,807-796	5-5,813-813[SIL];x-x,808-808[BULt]	((((((((((((.((((.((((&)))).))))-))))))))))))	GGGAGAAGGGAACAGAGCGAAG&UUUUUUUCU-UUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5529_c0_g1_807_TPlot.pdf
TRINITY_DN5529_c0_g1:809	si_s77	TRINITY_DN5529_c0_g1	797	818	809	-25.50	-17.70	0.694117647058824	9	2-5,817-814;7-10,812-809;11-21,807-797	1-1,818-818[UP5];6-6,813-813[SIL];x-x,808-808[BULt]	(((((((((((.((((.((((.&.)))).))))-)))))))))))	GGAGAAGGGAACAGAGCGAAGC&UUUUUUUUCU-UUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5529_c0_g1_809_TPlot.pdf
TRINITY_DN5529_c0_g1:810	si_s76	TRINITY_DN5529_c0_g1	798	819	810	-23.60	-15.40	0.652542372881356	11	3-6,817-814;8-11,812-809;12-21,807-798	1-2,819-818[UP5];7-7,813-813[SIL];x-x,808-808[BULt]	((((((((((.((((.((((..&..)))).))))-))))))))))	GAGAAGGGAACAGAGCGAAGCG&AUUUUUUUUCU-UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5529_c0_g1_810_TPlot.pdf
TRINITY_DN5529_c0_g1:977	si_a627	TRINITY_DN5529_c0_g1	966	985	977	-29.50	-19.50	0.661016949152542	13	1-4,985-982;10-20,977-967	5-9,981-978[AILq];21-21,966-966[UP3]	.(((((((((((....-((((&)))).....))))))))))).	CGAAGAUCGGCAAGCU-CGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.999996667958706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5529_c0_g1_977_TPlot.pdf
TRINITY_DN552_c0_g1:1062	si_a792	TRINITY_DN552_c0_g1	1050	1072	1062	-27.60	-18.40	0.666666666666667	9	1-8,1072-1065;9-16,1063-1056;17-20,1054-1051	x-x,1064-1064[BULt];x-x,1055-1055[BULt];21-21,1050-1050[UP3]	.((((.((((((((.((((((((&))))))))-))))))))-)))).	AGGAUCUGGAGGAUCAGGAGGAU&AUUUUUCU-AUUUUCCA-AUCCG	4	0.999995820903227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN552_c0_g1_1062_TPlot.pdf
TRINITY_DN552_c0_g1:1125	si_s474	TRINITY_DN552_c0_g1	1114	1134	1125	-31.80	-20.80	0.654088050314465	10.5	1-3,1134-1132;6-16,1129-1119	4-5,1131-1130[SIL];17-21,1118-1114[UP3]	.....(((((((((((..(((&)))..))))))))))).....	AGUUCUGUAGGAUCUGGAGGA&UCCAACGGAUCCUAUAUUUAU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s474_TRINITY_DN552_c0_g1_1125_TPlot.pdf
TRINITY_DN552_c0_g1:1126	si_s473	TRINITY_DN552_c0_g1	1115	1135	1126	-31.80	-21.80	0.685534591194969	9.5	1-4,1135-1132;7-17,1129-1119	5-6,1131-1130[SIL];18-21,1118-1115[UP3]	....(((((((((((..((((&))))..)))))))))))....	GUUCUGUAGGAUCUGGAGGAU&AUCCAACGGAUCCUAUAUUUA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN552_c0_g1_1126_TPlot.pdf
TRINITY_DN552_c0_g1:1128	si_s471	TRINITY_DN552_c0_g1	1117	1137	1128	-32.00	-21.80	0.68125	10.5	3-6,1135-1132;9-19,1129-1119	1-2,1137-1136[UP5];7-8,1131-1130[SIL];20-21,1118-1117[UP3]	..(((((((((((..((((..&..))))..)))))))))))..	UCUGUAGGAUCUGGAGGAUCU&AUAUCCAACGGAUCCUAUAUU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN552_c0_g1_1128_TPlot.pdf
TRINITY_DN552_c0_g1:1415	si_s68	TRINITY_DN552_c0_g1	1404	1424	1415	-23.10	-18.00	0.779220779220779	8	1-11,1424-1414;13-19,1412-1406	12-12,1413-1413[SIL];20-21,1405-1404[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UUGGGGAAGUAAUGGAGGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN552_c0_g1_1415_TPlot.pdf
TRINITY_DN552_c0_g1:1416	si_s67	TRINITY_DN552_c0_g1	1405	1425	1416	-25.60	-18.00	0.703125	7	2-12,1424-1414;14-20,1412-1406	1-1,1425-1425[UP5];13-13,1413-1413[SIL];21-21,1405-1405[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UGGGGAAGUAAUGGAGGUUGG&GCAACUUCUAUUUUUUUUCUU	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN552_c0_g1_1416_TPlot.pdf
TRINITY_DN552_c0_g1:1431	si_s898	TRINITY_DN552_c0_g1	1421	1441	1431	-30.70	-20.10	0.654723127035831	7	1-7,1441-1435;8-13,1433-1428;15-21,1427-1421	x-x,1434-1434[BULt];14-14,x-x[BULq]	(((((((-((((((.(((((((&)))))))-)))))).)))))))	GUUGGGA-UGGAGACGGAAGCU&GGCUUUC-UCUUCAAUUUCAAU	2	0.999993995370317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN552_c0_g1_1431_TPlot.pdf
TRINITY_DN552_c0_g1:1455	si_a403	TRINITY_DN552_c0_g1	1444	1464	1455	-22.00	-14.60	0.663636363636364	9	2-11,1463-1454;13-16,1452-1449;18-21,1447-1444	1-1,1464-1464[UP5];12-12,1453-1453[SIL];17-17,1448-1448[SIL]	((((.((((.((((((((((.&.)))))))))).)))).))))	GGAUCUGGAGGAAGCAGUUCA&AGAAUUGUUUUGUUUAUAUUU	2	0.999999993282683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN552_c0_g1_1455_TPlot.pdf
TRINITY_DN552_c0_g1:1478	si_a492	TRINITY_DN552_c0_g1	1467	1488	1478	-30.20	-19.70	0.652317880794702	8.5	1-5,1488-1484;7-9,1482-1480;10-10,1478-1478;12-21,1476-1467	6-6,1483-1483[SIL];x-x,1479-1479[BULt];11-11,1477-1477[SIL]	((((((((((.(.(((.(((((&))))).)))-).))))))))))	AGACGGAGGAGGAACAAGUUCU&AGAAUAUGU-CGUUUUUCGUCU	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN552_c0_g1_1478_TPlot.pdf
TRINITY_DN552_c0_g1:2670	si_s459	TRINITY_DN552_c0_g1	2658	2679	2670	-29.30	-19.10	0.651877133105802	8	2-3,2678-2677;5-12,2675-2668;15-21,2664-2658	1-1,2679-2679[UP5];4-4,2676-2676[SIL];13-14,2667-2665[AILt]	(((((((...((((((((.((.&.)).))))))))-..)))))))	GUUGGAUUCGGAGAUGAUGGUA&AACAAUUAUCUC-AUAUCCAAC	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN552_c0_g1_2670_TPlot.pdf
TRINITY_DN55302_c0_g1:283	si_a459	TRINITY_DN55302_c0_g1	272	292	283	-23.20	-15.70	0.676724137931034	5	1-7,292-286;9-19,284-274	8-8,285-285[SIL];20-21,273-272[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	GGAUAUAUUAUAUUUAACAAU&GUUGUUAUAUAUAAUAUGUAA	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN55302_c0_g1_283_TPlot.pdf
TRINITY_DN5530_c0_g1:11010	si_a115	TRINITY_DN5530_c0_g1	11000	11019	11010	-30.40	-20.20	0.664473684210526	6.5	2-4,11018-11016;6-16,11014-11004;18-21,11003-11000	1-1,11019-11019[UP5];5-5,11015-11015[SIL];17-17,x-x[BULq]	((((-(((((((((((.(((.&.))).))))))))))).))))	GCUG-AGAGCGAGCUCAUAUG&AAUACGAGCUUGUUUUAUAGC	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN5530_c0_g1_11010_TPlot.pdf
TRINITY_DN5530_c0_g1:11052	si_a323	TRINITY_DN5530_c0_g1	11041	11064	11052	-26.80	-18.70	0.697761194029851	10.5	1-6,11064-11059;7-9,11057-11055;10-20,11052-11042	x-x,11058-11058[BULt];x-x,11054-11053[BULt];21-21,11041-11041[UP3]	.(((((((((((..(((.((((((&))))))-)))--))))))))))).	CGGGAGUGAAAAAGGAUACGUGGA&UCCAUG-AUU--UUUUUAUUCCUU	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN5530_c0_g1_11052_TPlot.pdf
TRINITY_DN5530_c0_g1:11055	si_a322	TRINITY_DN5530_c0_g1	11042	11065	11055	-27.00	-18.70	0.692592592592593	10.5	2-7,11064-11059;8-10,11057-11055;11-21,11052-11042	1-1,11065-11065[UP5];x-x,11058-11058[BULt];x-x,11054-11053[BULt]	(((((((((((..(((.((((((.&.))))))-)))--)))))))))))	GGGAGUGAAAAAGGAUACGUGGAC&AUCCAUG-AUU--UUUUUAUUCCU	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN5530_c0_g1_11055_TPlot.pdf
TRINITY_DN5530_c0_g1:11056	si_a321	TRINITY_DN5530_c0_g1	11043	11066	11056	-26.70	-17.50	0.655430711610487	12	3-8,11064-11059;9-11,11057-11055;12-21,11052-11043	1-2,11066-11065[UP5];x-x,11058-11058[BULt];x-x,11054-11053[BULt]	((((((((((..(((.((((((..&..))))))-)))--))))))))))	GGAGUGAAAAAGGAUACGUGGACU&UAUCCAUG-AUU--UUUUUAUUCC	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN5530_c0_g1_11056_TPlot.pdf
TRINITY_DN5530_c0_g1:7122	si_s810	TRINITY_DN5530_c0_g1	7111	7131	7122	-27.90	-18.30	0.655913978494624	11	1-4,7131-7128;6-15,7126-7117	5-5,7127-7127[SIL];16-21,7116-7111[UP3]	......((((((((((.((((&)))).))))))))))......	UGGUCUGGGAAGGUGGGGAAG&CUUCGUUACCUUUUCUUAAUA	4	0.999999999613727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN5530_c0_g1_7122_TPlot.pdf
TRINITY_DN5530_c0_g1:7123	si_s809	TRINITY_DN5530_c0_g1	7112	7132	7123	-28.50	-19.70	0.691228070175439	10	1-5,7132-7128;7-16,7126-7117	6-6,7127-7127[SIL];17-21,7116-7112[UP3]	.....((((((((((.(((((&))))).)))))))))).....	GGUCUGGGAAGGUGGGGAAGA&UCUUCGUUACCUUUUCUUAAU	4	0.999985874321336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN5530_c0_g1_7123_TPlot.pdf
TRINITY_DN5530_c0_g1:7124	si_s808	TRINITY_DN5530_c0_g1	7113	7133	7124	-28.60	-19.70	0.688811188811189	10	2-6,7132-7128;8-17,7126-7117	1-1,7133-7133[UP5];7-7,7127-7127[SIL];18-21,7116-7113[UP3]	....((((((((((.(((((.&.))))).))))))))))....	GUCUGGGAAGGUGGGGAAGAC&AUCUUCGUUACCUUUUCUUAA	4	0.999999164737193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5530_c0_g1_7124_TPlot.pdf
TRINITY_DN5530_c0_g1:7127	si_s805	TRINITY_DN5530_c0_g1	7116	7136	7127	-28.60	-19.70	0.688811188811189	13	5-9,7132-7128;11-20,7126-7117	1-4,7136-7133[UP5];10-10,7127-7127[SIL];21-21,7116-7116[UP3]	.((((((((((.(((((....&....))))).)))))))))).	UGGGAAGGUGGGGAAGACAGG&UUUAUCUUCGUUACCUUUUCU	2	0.999775391228409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN5530_c0_g1_7127_TPlot.pdf
TRINITY_DN5530_c0_g1:7505	si_a762	TRINITY_DN5530_c0_g1	7486	7514	7505	-29.70	-22.90	0.771043771043771	12	1-14,7514-7501;15-21,7492-7486	x-x,7500-7493[BULt]	(((((((........((((((((((((((&))))))))))))))--------)))))))	GGAUCAGCUACUUGCUCGGAAACCCAGAG&CUUUGGGUUUUUGA--------UUGAUUC	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN5530_c0_g1_7505_TPlot.pdf
TRINITY_DN5530_c0_g1:7506	si_a761	TRINITY_DN5530_c0_g1	7487	7515	7506	-30.10	-21.20	0.704318936877076	12.5	2-15,7514-7501;16-21,7492-7487	1-1,7515-7515[UP5];x-x,7500-7493[BULt]	((((((........((((((((((((((.&.))))))))))))))--------))))))	GAUCAGCUACUUGCUCGGAAACCCAGAGA&CCUUUGGGUUUUUGA--------UUGAUU	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN5530_c0_g1_7506_TPlot.pdf
TRINITY_DN5530_c0_g1:7523	si_s65	TRINITY_DN5530_c0_g1	7512	7532	7523	-26.00	-18.30	0.703846153846154	7.5	1-4,7532-7529;7-11,7526-7522;13-21,7520-7512	5-6,7528-7527[SIL];12-12,7521-7521[SIL]	(((((((((.(((((..((((&))))..))))).)))))))))	GAGAAAGAAGAGAAGGAGCUG&UAGCAACUUCUAUUUUUUUUC	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN5530_c0_g1_7523_TPlot.pdf
TRINITY_DN5530_c0_g1:7722	si_a332	TRINITY_DN5530_c0_g1	7713	7731	7722	-30.60	-19.90	0.650326797385621	10	2-11,7730-7721;14-19,7720-7715	1-1,7731-7731[UP5];12-13,x-x[BULq];20-21,7714-7713[UP3]	..((((((--((((((((((.&.))))))))))..))))))..	UGUCGGGA--AGGAGUGGAGG&UUUUUAUUCCUUGUCCCGAAA	3	0.999999610255606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN5530_c0_g1_7722_TPlot.pdf
TRINITY_DN5530_c0_g1:7724	si_a330	TRINITY_DN5530_c0_g1	7715	7733	7724	-30.50	-21.20	0.695081967213115	8	2-13,7732-7721;16-21,7720-7715	1-1,7733-7733[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	UCGGGA--AGGAGUGGAGGAC&UUUUUUUAUUCCUUGUCCCGA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN5530_c0_g1_7724_TPlot.pdf
TRINITY_DN5530_c0_g1:7725	si_s68	TRINITY_DN5530_c0_g1	7714	7734	7725	-23.10	-15.20	0.658008658008658	13.5	4-18,7731-7717	1-3,7734-7732[UP5];19-21,7716-7714[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUCGGGAAGGAGUGGAGGACA&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5530_c0_g1_7725_TPlot.pdf
TRINITY_DN5530_c0_g1:891	si_a57	TRINITY_DN5530_c0_g1	876	901	891	-36.60	-27.80	0.759562841530055	12	1-8,901-894;9-10,892-891;11-20,886-877	x-x,893-893[BULt];x-x,890-887[BULt];21-21,876-876[UP3]	.((((((((((....((.((((((((&))))))))-))----)))))))))).	GUGAGAGAGGCCUUCGAGGUCGACUC&GAGUCGAC-UC----GCUUCUUUCAA	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN5530_c0_g1_891_TPlot.pdf
TRINITY_DN5531_c0_g1:1942	si_a326	TRINITY_DN5531_c0_g1	1931	1955	1942	-26.20	-19.80	0.755725190839695	13	1-9,1955-1947;10-21,1942-1931	x-x,1946-1943[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	GGCAGGGGGUAAUUGUAGAAGUCGU&AUGAUUUUU----UUAUUCCUUGUC	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5531_c0_g1_1942_TPlot.pdf
TRINITY_DN5531_c0_g1:4912	si_s810	TRINITY_DN5531_c0_g1	4901	4924	4912	-27.90	-18.20	0.652329749103943	15	1-7,4924-4918;8-16,4914-4906	x-x,4917-4915[BULt];17-21,4905-4901[UP3]	.....(((((((((...(((((((&)))))))---))))))))).....	AGACUGGAGAAGGUUUUGGCGAGG&CUUCGUU---ACCUUUUCUUAAUA	4	0.999999999967558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN5531_c0_g1_4912_TPlot.pdf
TRINITY_DN5531_c0_g1:4913	si_s809	TRINITY_DN5531_c0_g1	4902	4925	4913	-28.50	-19.60	0.687719298245614	14	1-8,4925-4918;9-17,4914-4906	x-x,4917-4915[BULt];18-21,4905-4902[UP3]	....(((((((((...((((((((&))))))))---)))))))))....	GACUGGAGAAGGUUUUGGCGAGGA&UCUUCGUU---ACCUUUUCUUAAU	2	0.999421598995741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN5531_c0_g1_4913_TPlot.pdf
TRINITY_DN5531_c0_g1:4914	si_s808	TRINITY_DN5531_c0_g1	4903	4926	4914	-28.60	-20.90	0.730769230769231	13	1-9,4926-4918;10-18,4914-4906	x-x,4917-4915[BULt];19-21,4905-4903[UP3]	...(((((((((...(((((((((&)))))))))---)))))))))...	ACUGGAGAAGGUUUUGGCGAGGAU&AUCUUCGUU---ACCUUUUCUUAA	4	0.995033730233295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5531_c0_g1_4914_TPlot.pdf
TRINITY_DN5531_c0_g1:4921	si_s804	TRINITY_DN5531_c0_g1	4907	4930	4921	-27.90	-23.50	0.842293906810036	8	1-13,4930-4918;14-21,4914-4907	x-x,4917-4915[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	GAGAAGGUUUUGGCGAGGAUGGAA&UUUUAUCUUCGUU---ACCUUUUC	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5531_c0_g1_4921_TPlot.pdf
TRINITY_DN5531_c0_g1:4922	si_s803	TRINITY_DN5531_c0_g1	4908	4931	4922	-26.00	-20.30	0.780769230769231	8.5	2-14,4930-4918;15-21,4914-4908	1-1,4931-4931[UP5];x-x,4917-4915[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	AGAAGGUUUUGGCGAGGAUGGAAG&AUUUUAUCUUCGUU---ACCUUUU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5531_c0_g1_4922_TPlot.pdf
TRINITY_DN5531_c0_g1:4923	si_s802	TRINITY_DN5531_c0_g1	4909	4932	4923	-26.40	-19.50	0.738636363636364	10.5	3-15,4930-4918;16-21,4914-4909	1-2,4932-4931[UP5];x-x,4917-4915[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	GAAGGUUUUGGCGAGGAUGGAAGU&UAUUUUAUCUUCGUU---ACCUUU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5531_c0_g1_4923_TPlot.pdf
TRINITY_DN5531_c0_g1:5027	si_s376	TRINITY_DN5531_c0_g1	5009	5037	5027	-42.50	-27.70	0.651764705882353	14.5	2-9,5036-5029;10-13,5027-5024;14-18,5016-5012	1-1,5037-5037[UP5];x-x,5028-5028[BULt];x-x,5023-5017[BULt];19-21,5011-5009[UP3]	...(((((.......((((.((((((((.&.))))))))-))))-------)))))...	GACGGCGGCCGAGUGGCACGGCGGGCGAA&AUCGCUCGC-GUGU-------CCGCCUUA	4	0.999999147316211	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN5531_c0_g1_5027_TPlot.pdf
TRINITY_DN55335_c0_g1:1871	si_s83	TRINITY_DN55335_c0_g1	1854	1880	1871	-30.90	-22.10	0.715210355987055	17.5	3-10,1878-1871;11-21,1864-1854	1-2,1880-1879[UP5];x-x,1870-1865[BULt]	(((((((((((......((((((((..&..))))))))------)))))))))))	GAGGAAGAAGAGAUUCUAGGGGAAGCU&UUCUUUCCUU------UCUUCUUCUUC	4	0.999999999992508	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN55335_c0_g1_1871_TPlot.pdf
TRINITY_DN55335_c0_g1:851	si_a768	TRINITY_DN55335_c0_g1	838	860	851	-28.40	-18.60	0.654929577464789	5.5	3-15,858-846;16-18,844-842;19-21,840-838	1-2,860-859[UP5];x-x,845-845[BULt];x-x,841-841[BULt]	(((.(((.(((((((((((((..&..)))))))))))))-)))-)))	AGACGUUGGAGUCAAUCAAAAUG&GUUUUUGAUUGAUUC-AAC-UCU	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN55335_c0_g1_851_TPlot.pdf
TRINITY_DN5533_c1_g1:2000	si_s423	TRINITY_DN5533_c1_g1	1986	2009	2000	-21.50	-14.00	0.651162790697674	10	1-10,2009-2000;11-18,1996-1989	x-x,1999-1997[BULt];19-21,1988-1986[UP3]	...((((((((...((((((((((&))))))))))---))))))))...	GCUUUAUUGUUCCCAUAUGGAAUA&UAUUCUAUAU---AACAAUAAUUA	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN5533_c1_g1_2000_TPlot.pdf
TRINITY_DN5533_c1_g1:3099	si_s423	TRINITY_DN5533_c1_g1	3088	3108	3099	-21.50	-15.40	0.716279069767442	9	1-14,3108-3095	15-21,3094-3088[UP3]	.......((((((((((((((&)))))))))))))).......	GGUACCAUGUUAUGUAGAGUA&UAUUCUAUAUAACAAUAAUUA	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN5533_c1_g1_3099_TPlot.pdf
TRINITY_DN5533_c1_g1:4308	si_a481	TRINITY_DN5533_c1_g1	4297	4317	4308	-25.60	-16.70	0.65234375	6.5	1-4,4317-4314;7-14,4311-4304;16-21,4302-4297	5-6,4313-4312[SIL];15-15,4303-4303[SIL]	((((((.((((((((..((((&))))..)))))))).))))))	GACAUGCUCUAUAUAUGGAUA&UAUUGUUAUAUAGAAUAUGUC	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN5533_c1_g1_4308_TPlot.pdf
TRINITY_DN55348_c0_g1:294	si_s68	TRINITY_DN55348_c0_g1	283	303	294	-23.10	-15.60	0.675324675324675	10.5	5-20,299-284	1-4,303-300[UP5];21-21,283-283[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGGAGAAAGAAUAGAAUAUU&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN55348_c0_g1_294_TPlot.pdf
TRINITY_DN5538_c0_g1:7628	si_s22	TRINITY_DN5538_c0_g1	7617	7637	7628	-26.70	-18.60	0.696629213483146	9	1-4,7637-7634;6-16,7632-7622	5-5,7633-7633[SIL];17-21,7621-7617[UP3]	.....(((((((((((.((((&)))).))))))))))).....	CUUGUGUUGCAAUCGAAAUGG&CUAUAUUGAUUGCAACUAAAU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN5538_c0_g1_7628_TPlot.pdf
TRINITY_DN5538_c0_g1:7802	si_a636	TRINITY_DN5538_c0_g1	7791	7811	7802	-26.30	-17.70	0.673003802281369	8.5	2-17,7810-7795	1-1,7811-7811[UP5];18-21,7794-7791[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGCAAUUCAAGGAAAUCGAUC&UGUCGAUUUUUUUGAGUAAUA	3	0.999999869376044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN5538_c0_g1_7802_TPlot.pdf
TRINITY_DN5538_c0_g1:7861	si_s603	TRINITY_DN5538_c0_g1	7850	7870	7861	-27.20	-18.90	0.694852941176471	6.5	1-6,7870-7865;8-17,7863-7854	7-7,7864-7864[SIL];18-21,7853-7850[UP3]	....((((((((((.((((((&)))))).))))))))))....	UGGGAAGAAAGAUUAGCUUGG&CCAAGCGAAUCUUUUUUAAAU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN5538_c0_g1_7861_TPlot.pdf
TRINITY_DN5539_c0_g1:1219	si_a453	TRINITY_DN5539_c0_g1	1208	1228	1219	-21.10	-14.60	0.691943127962085	11	3-16,1226-1213	1-2,1228-1227[UP5];17-21,1212-1208[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUAUCGUGUAGCAACAGUUCG&AUAAUUGUUGUUAUAUAUAAU	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN5539_c0_g1_1219_TPlot.pdf
TRINITY_DN553_c0_g1:1035	si_s882	TRINITY_DN553_c0_g1	1024	1047	1035	-26.30	-18.30	0.695817490494297	13.5	1-8,1047-1040;12-20,1033-1025	9-11,1039-1034[AILt];21-21,1024-1024[UP3]	.(((((((((......((((((((&))))))))---...))))))))).	UGGCCUAUUUUCAGAAUUUAGUUC&GAACUAAA---AAUAAAUAGGCUU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN553_c0_g1_1035_TPlot.pdf
TRINITY_DN553_c0_g1:1036	si_s881	TRINITY_DN553_c0_g1	1025	1048	1036	-27.00	-18.40	0.681481481481481	13.5	2-9,1047-1040;13-21,1033-1025	1-1,1048-1048[UP5];10-12,1039-1034[AILt]	(((((((((......((((((((.&.))))))))---...)))))))))	GGCCUAUUUUCAGAAUUUAGUUCA&AGAACUAAA---AAUAAAUAGGCU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s881_TRINITY_DN553_c0_g1_1036_TPlot.pdf
TRINITY_DN553_c0_g1:1148	si_a404	TRINITY_DN553_c0_g1	1137	1157	1148	-21.70	-15.10	0.695852534562212	8	1-10,1157-1148;12-16,1146-1142;18-20,1140-1138	11-11,1147-1147[SIL];17-17,1141-1141[SIL];21-21,1137-1137[UP3]	.(((.(((((.((((((((((&)))))))))).))))).))).	AAGACGUAAGGAGAGCAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN553_c0_g1_1148_TPlot.pdf
TRINITY_DN553_c0_g1:1149	si_a403	TRINITY_DN553_c0_g1	1138	1158	1149	-22.00	-15.00	0.681818181818182	10	2-11,1157-1148;13-17,1146-1142	1-1,1158-1158[UP5];12-12,1147-1147[SIL];18-21,1141-1138[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	AGACGUAAGGAGAGCAAUUCA&AGAAUUGUUUUGUUUAUAUUU	3	0.999999999064973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN553_c0_g1_1149_TPlot.pdf
TRINITY_DN553_c0_g1:1150	si_a402	TRINITY_DN553_c0_g1	1139	1159	1150	-22.40	-15.00	0.669642857142857	10	3-12,1157-1148;14-18,1146-1142	1-2,1159-1158[UP5];13-13,1147-1147[SIL];19-21,1141-1139[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	GACGUAAGGAGAGCAAUUCAC&UAGAAUUGUUUUGUUUAUAUU	3	0.999999999583943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN553_c0_g1_1150_TPlot.pdf
TRINITY_DN553_c0_g1:1151	si_a401	TRINITY_DN553_c0_g1	1140	1160	1151	-22.60	-15.00	0.663716814159292	11	4-13,1157-1148;15-19,1146-1142	1-3,1160-1158[UP5];14-14,1147-1147[SIL];20-21,1141-1140[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	ACGUAAGGAGAGCAAUUCACG&AUAGAAUUGUUUUGUUUAUAU	3	0.999999999738819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN553_c0_g1_1151_TPlot.pdf
TRINITY_DN553_c0_g1:1152	si_a400	TRINITY_DN553_c0_g1	1141	1161	1152	-22.80	-15.00	0.657894736842105	11.5	5-14,1157-1148;16-20,1146-1142	1-4,1161-1158[UP5];15-15,1147-1147[SIL];21-21,1141-1141[UP3]	.(((((.((((((((((....&....)))))))))).))))).	CGUAAGGAGAGCAAUUCACGU&UAUAGAAUUGUUUUGUUUAUA	3	0.999999999733478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN553_c0_g1_1152_TPlot.pdf
TRINITY_DN553_c0_g1:1153	si_a399	TRINITY_DN553_c0_g1	1142	1162	1153	-22.60	-14.80	0.654867256637168	12.5	6-15,1157-1148;17-21,1146-1142	1-5,1162-1158[UP5];16-16,1147-1147[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GUAAGGAGAGCAAUUCACGUU&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999977451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN553_c0_g1_1153_TPlot.pdf
TRINITY_DN553_c0_g1:1377	si_a406	TRINITY_DN553_c0_g1	1366	1386	1377	-19.80	-13.40	0.676767676767677	10.5	1-8,1386-1379;10-18,1377-1369	9-9,1378-1378[SIL];19-21,1368-1366[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AGAGGAUGUAAGGAGGGCAAU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN553_c0_g1_1377_TPlot.pdf
TRINITY_DN553_c0_g1:1378	si_a405	TRINITY_DN553_c0_g1	1367	1387	1378	-19.80	-14.30	0.722222222222222	9.5	1-9,1387-1379;11-19,1377-1369	10-10,1378-1378[SIL];20-21,1368-1367[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GAGGAUGUAAGGAGGGCAAUU&AAUUGUUUUGUUUAUAUUUAA	3	0.999999991331938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN553_c0_g1_1378_TPlot.pdf
TRINITY_DN553_c0_g1:1379	si_a404	TRINITY_DN553_c0_g1	1368	1388	1379	-21.70	-18.10	0.834101382488479	8.5	1-10,1388-1379;12-20,1377-1369	11-11,1378-1378[SIL];21-21,1368-1368[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AGGAUGUAAGGAGGGCAAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN553_c0_g1_1379_TPlot.pdf
TRINITY_DN553_c0_g1:1380	si_a403	TRINITY_DN553_c0_g1	1369	1389	1380	-22.00	-17.70	0.804545454545455	8	2-11,1388-1379;13-21,1377-1369	1-1,1389-1389[UP5];12-12,1378-1378[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	GGAUGUAAGGAGGGCAAUUCA&AGAAUUGUUUUGUUUAUAUUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN553_c0_g1_1380_TPlot.pdf
TRINITY_DN553_c0_g1:1381	si_a402	TRINITY_DN553_c0_g1	1370	1390	1381	-22.40	-17.40	0.776785714285714	8.5	3-12,1388-1379;14-21,1377-1370	1-2,1390-1389[UP5];13-13,1378-1378[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GAUGUAAGGAGGGCAAUUCAU&UAGAAUUGUUUUGUUUAUAUU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN553_c0_g1_1381_TPlot.pdf
TRINITY_DN553_c0_g1:1382	si_a401	TRINITY_DN553_c0_g1	1371	1391	1382	-22.60	-16.10	0.712389380530973	10	4-13,1388-1379;15-21,1377-1371	1-3,1391-1389[UP5];14-14,1378-1378[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	AUGUAAGGAGGGCAAUUCAUG&AUAGAAUUGUUUUGUUUAUAU	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN553_c0_g1_1382_TPlot.pdf
TRINITY_DN553_c0_g1:1383	si_a400	TRINITY_DN553_c0_g1	1372	1392	1383	-22.80	-14.90	0.653508771929825	11.5	5-14,1388-1379;16-21,1377-1372	1-4,1392-1389[UP5];15-15,1378-1378[SIL]	((((((.((((((((((....&....)))))))))).))))))	UGUAAGGAGGGCAAUUCAUGU&UAUAGAAUUGUUUUGUUUAUA	2	0.999999748732499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN553_c0_g1_1383_TPlot.pdf
TRINITY_DN553_c0_g1:1844	si_a206	TRINITY_DN553_c0_g1	1833	1853	1844	-23.90	-15.60	0.652719665271967	4.5	1-2,1853-1852;4-12,1850-1842;14-21,1840-1833	3-3,1851-1851[SIL];13-13,1841-1841[SIL]	((((((((.(((((((((.((&)).))))))))).))))))))	UUUGAUUAAUCGAUUUGUAAG&CUAAUAAAUCGACUAAUUAAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a206_TRINITY_DN553_c0_g1_1844_TPlot.pdf
TRINITY_DN553_c0_g1:208	si_a410	TRINITY_DN553_c0_g1	197	217	208	-17.80	-11.80	0.662921348314607	6.5	1-8,217-210;10-20,208-198	9-9,209-209[SIL];21-21,197-197[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	AUUAUUUGAAUGAAAAUAGAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999997696753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN553_c0_g1_208_TPlot.pdf
TRINITY_DN553_c0_g1:209	si_a409	TRINITY_DN553_c0_g1	198	218	209	-19.50	-12.90	0.661538461538462	6	1-9,218-210;11-21,208-198	10-10,209-209[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UUAUUUGAAUGAAAAUAGAAU&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN553_c0_g1_209_TPlot.pdf
TRINITY_DN553_c0_g2:1029	si_s437	TRINITY_DN553_c0_g2	1018	1038	1029	-19.70	-13.20	0.67005076142132	10.5	2-15,1037-1024	1-1,1038-1038[UP5];16-21,1023-1018[UP3]	......((((((((((((((.&.))))))))))))))......	UCGAUAGUAAUGUGUGGUUAG&AUAAUUACAUAUUAUAUAUAA	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN553_c0_g2_1029_TPlot.pdf
TRINITY_DN553_c0_g2:1030	si_s436	TRINITY_DN553_c0_g2	1019	1039	1030	-19.60	-13.20	0.673469387755102	11.5	3-16,1037-1024	1-2,1039-1038[UP5];17-21,1023-1019[UP3]	.....((((((((((((((..&..)))))))))))))).....	CGAUAGUAAUGUGUGGUUAGG&AAUAAUUACAUAUUAUAUAUA	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN553_c0_g2_1030_TPlot.pdf
TRINITY_DN553_c0_g2:452	si_s193	TRINITY_DN553_c0_g2	441	460	452	-30.40	-20.20	0.664473684210526	7	2-7,459-454;10-17,452-445;19-21,443-441	1-1,460-460[UP5];8-9,453-453[AILq];18-18,444-444[SIL]	(((.((((((((.-((((((.&.))))))..)))))))).)))	GGUCCAUUCCAAC-UGAUCGG&ACGAUUAUUUUGGAAUGUACC	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN553_c0_g2_452_TPlot.pdf
TRINITY_DN553_c0_g2:702	si_a136	TRINITY_DN553_c0_g2	691	713	702	-25.70	-16.90	0.657587548638132	9.5	2-7,712-707;8-18,704-694	1-1,713-713[UP5];x-x,706-705[BULt];19-21,693-691[UP3]	...(((((((((((..((((((.&.))))))--)))))))))))...	UCCCAGCGAUUAGUUAUACUAUA&AAUAGUA--AUUAAUCGUUGUUG	3	0.993398626483176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN553_c0_g2_702_TPlot.pdf
TRINITY_DN553_c0_g2:703	si_a135	TRINITY_DN553_c0_g2	692	714	703	-25.70	-16.90	0.657587548638132	10.5	3-8,712-707;9-19,704-694	1-2,714-713[UP5];x-x,706-705[BULt];20-21,693-692[UP3]	..(((((((((((..((((((..&..))))))--)))))))))))..	CCCAGCGAUUAGUUAUACUAUAU&CAAUAGUA--AUUAAUCGUUGUU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN553_c0_g2_703_TPlot.pdf
TRINITY_DN553_c0_g2:953	si_s238	TRINITY_DN553_c0_g2	942	965	953	-33.40	-22.70	0.679640718562874	11	3-7,963-959;8-12,955-951;14-21,949-942	1-2,965-964[UP5];x-x,958-956[BULt];13-13,950-950[SIL]	((((((((.(((((...(((((..&..)))))---))))).))))))))	GGAGGUGCGUAUUGUGAAUUCCAA&AAGGAAU---CAAUAGGCAUUUCC	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s238_TRINITY_DN553_c0_g2_953_TPlot.pdf
TRINITY_DN55403_c0_g1:435	si_a406	TRINITY_DN55403_c0_g1	424	445	435	-19.80	-13.00	0.656565656565657	9	2-5,444-441;7-19,438-426	1-1,445-445[UP5];6-6,440-439[AILt];20-21,425-424[UP3]	..(((((((((((((..((((.&.))))-.)))))))))))))..	AAUGGAUAUAAACGAUUACAAA&AUUGU-UUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN55403_c0_g1_435_TPlot.pdf
TRINITY_DN55403_c0_g1:436	si_a405	TRINITY_DN55403_c0_g1	425	446	436	-19.80	-13.00	0.656565656565657	10	3-6,444-441;8-20,438-426	1-2,446-445[UP5];7-7,440-439[AILt];21-21,425-425[UP3]	.(((((((((((((..((((..&..))))-.))))))))))))).	AUGGAUAUAAACGAUUACAAAU&AAUUGU-UUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN55403_c0_g1_436_TPlot.pdf
TRINITY_DN55415_c0_g1:411	si_a884	TRINITY_DN55415_c0_g1	400	421	411	-25.60	-16.90	0.66015625	6.5	1-7,421-415;8-10,413-411;12-19,409-402	x-x,414-414[BULt];11-11,410-410[SIL];20-21,401-400[UP3]	..((((((((.(((.(((((((&)))))))-))).))))))))..	AGAUUACUAUUUUGAAUUGCAG&UUGCAAU-CAAUAUAGUAAUAA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN55415_c0_g1_411_TPlot.pdf
TRINITY_DN55421_c0_g1:123	si_s448	TRINITY_DN55421_c0_g1	110	132	123	-23.00	-16.10	0.7	4.5	1-3,132-130;5-15,128-118;16-21,115-110	4-4,129-129[SIL];x-x,117-116[BULt]	((((((..(((((((((((.(((&))).)))))))))))--))))))	GAUGAUUUUGUUGUUAUAUUUAA&UUAUAUAUAACAACA--AUUAUC	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN55421_c0_g1_123_TPlot.pdf
TRINITY_DN55421_c0_g1:348	si_s316	TRINITY_DN55421_c0_g1	336	358	348	-31.50	-22.10	0.701587301587302	7.5	2-8,357-351;9-15,349-343;16-19,341-338	1-1,358-358[UP5];x-x,350-350[BULt];x-x,342-342[BULt];20-21,337-336[UP3]	..((((.(((((((.(((((((.&.)))))))-)))))))-))))..	UAUGUGAACAAGAAUGGGCAGAU&UUCUGUCC-UUCUUGU-UACAAA	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN55421_c0_g1_348_TPlot.pdf
TRINITY_DN55421_c0_g1:349	si_s315	TRINITY_DN55421_c0_g1	337	359	349	-31.60	-22.10	0.699367088607595	8.5	3-9,357-351;10-16,349-343;17-20,341-338	1-2,359-358[UP5];x-x,350-350[BULt];x-x,342-342[BULt];21-21,337-337[UP3]	.((((.(((((((.(((((((..&..)))))))-)))))))-)))).	AUGUGAACAAGAAUGGGCAGAUG&AUUCUGUCC-UUCUUGU-UACAA	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN55421_c0_g1_349_TPlot.pdf
TRINITY_DN55421_c0_g1:353	si_s312	TRINITY_DN55421_c0_g1	341	362	353	-29.00	-20.50	0.706896551724138	13	6-12,357-351;13-20,349-342	1-5,362-358[UP5];x-x,350-350[BULt];21-21,341-341[UP3]	.((((((((.(((((((.....&.....)))))))-)))))))).	GAACAAGAAUGGGCAGAUGAAU&AAAAUUCUGUCC-UUCUUGUUA	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN55421_c0_g1_353_TPlot.pdf
TRINITY_DN55422_c0_g1:199	si_s776	TRINITY_DN55422_c0_g1	188	208	199	-25.10	-16.88	0.672509960159362	7	1-15,208-194;19-21,190-188	16-18,193-191[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	UUGGAAUAUGGUAAUGGUGAU&AUUACUAUUGCUAUAAAACAA	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN55422_c0_g1_199_TPlot.pdf
TRINITY_DN55422_c0_g1:230	si_s800	TRINITY_DN55422_c0_g1	217	239	230	-29.70	-24.00	0.808080808080808	4	1-17,239-223;18-21,220-217	x-x,222-221[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	AGGUCUAGCGGAGAUAAAAUAUG&CGUAUUUUAUCUUCGUU--ACCU	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN55422_c0_g1_230_TPlot.pdf
TRINITY_DN55422_c0_g1:382	si_s76	TRINITY_DN55422_c0_g1	369	391	382	-23.60	-17.20	0.728813559322034	7.5	1-15,391-377;16-19,374-371	x-x,376-375[BULt];20-21,370-369[UP3]	..((((..(((((((((((((((&)))))))))))))))--))))..	UUGAAGGCGGAAAGAAAGGAGAU&AUUUUUUUUCUUUCC--UUUCUU	2	0.999999999999831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN55422_c0_g1_382_TPlot.pdf
TRINITY_DN55422_c0_g1:384	si_s74	TRINITY_DN55422_c0_g1	371	393	384	-25.00	-18.00	0.72	7.5	2-17,392-377;18-21,374-371	1-1,393-393[UP5];x-x,376-375[BULt]	((((..((((((((((((((((.&.))))))))))))))))--))))	GAAGGCGGAAAGAAAGGAGAUGA&CUAUUUUUUUUCUUUCC--UUUC	2	0.999999116775739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN55422_c0_g1_384_TPlot.pdf
TRINITY_DN55422_c0_g1:388	si_s70	TRINITY_DN55422_c0_g1	377	396	388	-25.80	-18.30	0.709302325581395	8	3-5,394-392;7-21,391-377	1-2,396-395[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GGAAAGAAAGGAGAU-GAAAU&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999575435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN55422_c0_g1_388_TPlot.pdf
TRINITY_DN5542_c0_g1:1158	si_a509	TRINITY_DN5542_c0_g1	1147	1167	1158	-37.30	-24.40	0.654155495978552	6.5	1-12,1167-1156;15-16,1154-1153;19-21,1149-1147	13-14,1155-1155[AILq];17-18,1152-1150[AILt]	(((...((.-((((((((((((&))))))))))))..))-..)))	GCUGUGACC-UCCAAGGAGGAC&GUCUUCCUUGGAAUGU-AAGGC	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN5542_c0_g1_1158_TPlot.pdf
TRINITY_DN5542_c0_g1:1162	si_a505	TRINITY_DN5542_c0_g1	1151	1171	1162	-33.30	-25.30	0.75975975975976	9	3-16,1169-1156	1-2,1171-1170[UP5];17-21,1155-1151[UP3]	.....((((((((((((((..&..)))))))))))))).....	UGACCUCCAAGGAGGACGAUG&UUUCGUCUUCCUUGGAAUGUA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN5542_c0_g1_1162_TPlot.pdf
TRINITY_DN5542_c0_g1:1166	si_a501	TRINITY_DN5542_c0_g1	1155	1179	1166	-33.50	-26.90	0.802985074626866	13	2-6,1178-1174;7-20,1169-1156	1-1,1179-1179[UP5];x-x,1173-1170[BULt];21-21,1155-1155[UP3]	.((((((((((((((....(((((.&.)))))----)))))))))))))).	CUCCAAGGAGGACGAUGAGGAGACC&CGUUUU----UCGUCUUCCUUGGAA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5542_c0_g1_1166_TPlot.pdf
TRINITY_DN5542_c0_g1:1167	si_a500	TRINITY_DN5542_c0_g1	1156	1175	1167	-34.40	-27.10	0.787790697674419	7.5	1-2,1175-1174;4-5,1172-1171;8-21,1169-1156	3-3,1173-1173[SIL];6-7,1170-1170[AILq]	((((((((((((((.-((.((&)).))..))))))))))))))	UCCAAGGAGGACGAU-GAGGA&UCGUUUUUCGUCUUCCUUGGA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN5542_c0_g1_1167_TPlot.pdf
TRINITY_DN5542_c0_g1:1168	si_a499	TRINITY_DN5542_c0_g1	1157	1178	1168	-35.20	-27.40	0.778409090909091	7.5	1-3,1178-1176;5-8,1174-1171;9-21,1169-1157	4-4,1175-1175[SIL];x-x,1170-1170[BULt]	(((((((((((((.((((.(((&))).))))-)))))))))))))	CCAAGGAGGACGAUGAGGAGAC&GUCGUUUU-UCGUCUUCCUUGG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN5542_c0_g1_1168_TPlot.pdf
TRINITY_DN5542_c0_g1:1169	si_a498	TRINITY_DN5542_c0_g1	1158	1179	1169	-33.50	-24.30	0.725373134328358	8.5	2-4,1178-1176;6-9,1174-1171;10-21,1169-1158	1-1,1179-1179[UP5];5-5,1175-1175[SIL];x-x,1170-1170[BULt]	((((((((((((.((((.(((.&.))).))))-))))))))))))	CAAGGAGGACGAUGAGGAGACC&UGUCGUUUU-UCGUCUUCCUUG	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN5542_c0_g1_1169_TPlot.pdf
TRINITY_DN5542_c0_g1:1171	si_a497	TRINITY_DN5542_c0_g1	1159	1180	1171	-32.00	-21.60	0.675	10.5	3-5,1178-1176;7-10,1174-1171;11-21,1169-1159	1-2,1180-1179[UP5];6-6,1175-1175[SIL];x-x,1170-1170[BULt]	(((((((((((.((((.(((..&..))).))))-)))))))))))	AAGGAGGACGAUGAGGAGACCG&AUGUCGUUUU-UCGUCUUCCUU	4	0.999999999999757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5542_c0_g1_1171_TPlot.pdf
TRINITY_DN5542_c0_g1:1440	si_a759	TRINITY_DN5542_c0_g1	1428	1449	1440	-32.60	-22.90	0.702453987730061	9	1-12,1449-1438;13-16,1436-1433	x-x,1437-1437[BULt];17-21,1432-1428[UP3]	.....((((.((((((((((((&))))))))))))-)))).....	UGCUGCAAACGACCCGAAGGAG&CUCCUUUGGGUU-UUUGAUUGA	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5542_c0_g1_1440_TPlot.pdf
TRINITY_DN5542_c0_g1:1442	si_a757	TRINITY_DN5542_c0_g1	1430	1451	1442	-33.10	-26.40	0.797583081570997	6.5	2-14,1450-1438;15-18,1436-1433	1-1,1451-1451[UP5];x-x,1437-1437[BULt];19-21,1432-1430[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	CUGCAAACGACCCGAAGGAGGG&ACCUCCUUUGGGUU-UUUGAUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5542_c0_g1_1442_TPlot.pdf
TRINITY_DN5542_c0_g1:1448	si_a751	TRINITY_DN5542_c0_g1	1437	1457	1448	-37.20	-24.50	0.658602150537634	15	8-20,1450-1438	1-7,1457-1451[UP5];21-21,1437-1437[UP3]	.(((((((((((((.......&.......))))))))))))).	CGACCCGAAGGAGGGACCAGC&CCAUGAACCUCCUUUGGGUUU	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN5542_c0_g1_1448_TPlot.pdf
TRINITY_DN5542_c0_g1:1465	si_s95	TRINITY_DN5542_c0_g1	1453	1473	1465	-36.30	-23.60	0.650137741046832	7	1-7,1473-1467;9-15,1466-1460;17-17,1458-1458;18-21,1456-1453	8-8,x-x[BULq];16-16,1459-1459[SIL];x-x,1457-1457[BULt]	((((.(.(((((((-(((((((&))))))).))))))).)-))))	CCAGCUGCGAAGCG-GGAGGAG&UUCUUCUUCGCUUCGGA-UUGG	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN5542_c0_g1_1465_TPlot.pdf
TRINITY_DN5542_c0_g1:1472	si_s90	TRINITY_DN5542_c0_g1	1459	1482	1472	-35.30	-24.00	0.679886685552408	8	1-7,1482-1476;8-14,1474-1468;15-20,1465-1460	x-x,1475-1475[BULt];x-x,1467-1466[BULt];21-21,1459-1459[UP3]	.((((((..(((((((.(((((((&)))))))-)))))))--)))))).	GCGAAGCGGGAGGAGGCAGGAAAG&CUUUCUU-CUUCUUC--GCUUCGG	3	0.999999999790959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5542_c0_g1_1472_TPlot.pdf
TRINITY_DN5542_c0_g1:1474	si_s312	TRINITY_DN5542_c0_g1	1462	1483	1474	-29.00	-19.40	0.668965517241379	14	5-11,1479-1473;12-20,1471-1463	1-4,1483-1480[UP5];x-x,1472-1472[BULt];21-21,1462-1462[UP3]	.(((((((((.(((((((....&....)))))))-))))))))).	AAGCGGGAGGAGGCAGGAAAGC&AAAAUUCUGUC-CUUCUUGUUA	3	0.999999999931343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN5542_c0_g1_1474_TPlot.pdf
TRINITY_DN5542_c0_g1:1478	si_s80	TRINITY_DN5542_c0_g1	1467	1487	1478	-28.20	-18.50	0.656028368794326	11.5	6-12,1482-1476;14-21,1474-1467	1-5,1487-1483[UP5];13-13,1475-1475[SIL]	((((((((.(((((((.....&.....))))))).))))))))	GGAGGAGGCAGGAAAGCCAAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5542_c0_g1_1478_TPlot.pdf
TRINITY_DN5542_c0_g1:1533	si_s894	TRINITY_DN5542_c0_g1	1522	1542	1533	-29.10	-19.30	0.663230240549828	14	5-16,1538-1527	1-4,1542-1539[UP5];17-21,1526-1522[UP3]	.....((((((((((((....&....)))))))))))).....	AUCUCGAAGAGAAGGCUACAG&AAUAGGCUUUCUCUUCAAUUU	4	0.999999982404815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN5542_c0_g1_1533_TPlot.pdf
TRINITY_DN5542_c0_g1:1534	si_s893	TRINITY_DN5542_c0_g1	1523	1543	1534	-29.10	-19.30	0.663230240549828	15	6-17,1538-1527	1-5,1543-1539[UP5];18-21,1526-1523[UP3]	....((((((((((((.....&.....))))))))))))....	UCUCGAAGAGAAGGCUACAGG&AAAUAGGCUUUCUCUUCAAUU	4	0.999999958128544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN5542_c0_g1_1534_TPlot.pdf
TRINITY_DN5542_c0_g1:1535	si_s892	TRINITY_DN5542_c0_g1	1524	1544	1535	-29.50	-19.30	0.654237288135593	16	7-18,1538-1527	1-6,1544-1539[UP5];19-21,1526-1524[UP3]	...((((((((((((......&......))))))))))))...	CUCGAAGAGAAGGCUACAGGC&UAAAUAGGCUUUCUCUUCAAU	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN5542_c0_g1_1535_TPlot.pdf
TRINITY_DN5542_c0_g1:1536	si_s891	TRINITY_DN5542_c0_g1	1525	1545	1536	-29.60	-19.30	0.652027027027027	17	8-19,1538-1527	1-7,1545-1539[UP5];20-21,1526-1525[UP3]	..((((((((((((.......&.......))))))))))))..	UCGAAGAGAAGGCUACAGGCG&AUAAAUAGGCUUUCUCUUCAA	4	0.999999540968882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN5542_c0_g1_1536_TPlot.pdf
TRINITY_DN5542_c0_g1:1537	si_s890	TRINITY_DN5542_c0_g1	1526	1546	1537	-29.50	-19.30	0.654237288135593	18	9-20,1538-1527	1-8,1546-1539[UP5];21-21,1526-1526[UP3]	.((((((((((((........&........)))))))))))).	CGAAGAGAAGGCUACAGGCGU&AAUAAAUAGGCUUUCUCUUCA	3	0.999995299209174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN5542_c0_g1_1537_TPlot.pdf
TRINITY_DN5542_c0_g1:180	si_a503	TRINITY_DN5542_c0_g1	169	189	180	-32.10	-21.90	0.682242990654206	6	1-12,189-178;14-18,176-172	13-13,177-177[SIL];19-21,171-169[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UACUCCAGUGAAGACGAGAAG&UUUUUCGUCUUCCUUGGAAUG	4	0.999988743695479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN5542_c0_g1_180_TPlot.pdf
TRINITY_DN5542_c0_g1:2369	si_s78	TRINITY_DN5542_c0_g1	2357	2378	2369	-26.20	-17.30	0.66030534351145	14	7-18,2372-2361;19-21,2359-2357	1-6,2378-2373[UP5];x-x,2360-2360[BULt]	(((.((((((((((((......&......))))))))))))-)))	AGAUAGAAAGGAGAGGCUCAGG&UUUUUUUCUUUCCUUUCU-UCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5542_c0_g1_2369_TPlot.pdf
TRINITY_DN5542_c0_g1:2372	si_s75	TRINITY_DN5542_c0_g1	2361	2381	2372	-24.00	-15.70	0.654166666666667	18.5	10-21,2372-2361	1-9,2381-2373[UP5]	((((((((((((.........&.........))))))))))))	AGAAAGGAGAGGCUCAGGAGG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5542_c0_g1_2372_TPlot.pdf
TRINITY_DN5542_c0_g1:2406	si_a295	TRINITY_DN5542_c0_g1	2395	2416	2406	-27.50	-17.92	0.651636363636364	12.5	1-6,2416-2411;10-20,2406-2396	7-9,2410-2407[AILt];21-21,2395-2395[UP3]	.(((((((((((....((((((&))))))-...))))))))))).	CGGUGGAUCUUUCGAAGGAUCC&GGAUUU-AAAAAAGAUUCGCUU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a295_TRINITY_DN5542_c0_g1_2406_TPlot.pdf
TRINITY_DN5542_c0_g1:2548	si_s631	TRINITY_DN5542_c0_g1	2536	2557	2548	-36.00	-24.08	0.668888888888889	10	1-8,2557-2550;12-14,2546-2544;15-21,2542-2536	9-11,2549-2547[SIL];x-x,2543-2543[BULt]	(((((((.(((...((((((((&))))))))...)))-)))))))	GGCGAGCUGCCAAAGAGAGGAU&AUCUUUUCGUAGGC-GUUUGCC	2	0.993689766352297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN5542_c0_g1_2548_TPlot.pdf
TRINITY_DN5542_c0_g1:2656	si_s805	TRINITY_DN5542_c0_g1	2643	2665	2656	-28.60	-18.62	0.651048951048951	7.5	1-14,2665-2652;15-15,2650-2650;19-21,2645-2643	x-x,2651-2651[BULt];16-18,2649-2646[AILt]	(((....(.((((((((((((((&))))))))))))))-)-...)))	GGAUAUCGAGUGACGAAGAUGAA&UUUAUCUUCGUUAC-C-UUUUCU	4	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN5542_c0_g1_2656_TPlot.pdf
TRINITY_DN5542_c0_g1:2657	si_s804	TRINITY_DN5542_c0_g1	2646	2666	2657	-27.90	-18.80	0.673835125448029	8	1-15,2666-2652	16-21,2651-2646[UP3]	......(((((((((((((((&)))))))))))))))......	UAUCGAGUGACGAAGAUGAAG&UUUUAUCUUCGUUACCUUUUC	3	0.999999995277542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN5542_c0_g1_2657_TPlot.pdf
TRINITY_DN5542_c0_g1:2659	si_s802	TRINITY_DN5542_c0_g1	2648	2668	2659	-26.40	-18.80	0.712121212121212	9.5	3-17,2666-2652	1-2,2668-2667[UP5];18-21,2651-2648[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCGAGUGACGAAGAUGAAGGA&UAUUUUAUCUUCGUUACCUUU	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5542_c0_g1_2659_TPlot.pdf
TRINITY_DN5542_c0_g1:2660	si_s801	TRINITY_DN5542_c0_g1	2649	2669	2660	-28.20	-18.80	0.666666666666667	10.5	4-18,2666-2652	1-3,2669-2667[UP5];19-21,2651-2649[UP3]	...(((((((((((((((...&...)))))))))))))))...	CGAGUGACGAAGAUGAAGGAU&GUAUUUUAUCUUCGUUACCUU	2	0.99965277419438	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN5542_c0_g1_2660_TPlot.pdf
TRINITY_DN5542_c0_g1:2663	si_s798	TRINITY_DN5542_c0_g1	2652	2675	2663	-29.30	-21.00	0.716723549488055	14.5	1-3,2675-2673;7-21,2666-2652	4-6,2672-2667[AILt]	(((((((((((((((......(((&)))---...)))))))))))))))	GUGACGAAGAUGAAGGAUCCGGAG&CUC---GUAUUUUAUCUUCGUUAC	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN5542_c0_g1_2663_TPlot.pdf
TRINITY_DN5542_c0_g1:2664	si_s797	TRINITY_DN5542_c0_g1	2653	2676	2664	-30.00	-19.70	0.656666666666667	15	1-4,2676-2673;8-21,2666-2653	5-7,2672-2667[AILt]	((((((((((((((......((((&))))---...))))))))))))))	UGACGAAGAUGAAGGAUCCGGAGU&GCUC---GUAUUUUAUCUUCGUUA	2	0.999990601104866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN5542_c0_g1_2664_TPlot.pdf
TRINITY_DN5542_c0_g1:375	si_a720	TRINITY_DN5542_c0_g1	363	384	375	-35.30	-29.10	0.824362606232295	8.5	4-15,381-370;16-21,368-363	1-3,384-382[UP5];x-x,369-369[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GGAUGCGCCGGGUGACGAUGAU&AUAAUCGUUACUCGG-GCAUCU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN5542_c0_g1_375_TPlot.pdf
TRINITY_DN5542_c0_g1:4525	si_s888	TRINITY_DN5542_c0_g1	4523	4534	4525	-26.80	-17.60	0.656716417910448	1	11-21,4533-4523	10-10,4534-4534[SIL]	(((((((((((.&.)))))))))))	AAGAGAAAGCCC&AAAAUAAAUAGG	3	0.999991195257928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN5542_c0_g1_4525_TPlot.pdf
TRINITY_DN5542_c0_g1:5081	si_a556	TRINITY_DN5542_c0_g1	5069	5090	5081	-33.40	-22.30	0.667664670658683	10.5	3-8,5088-5083;10-15,5081-5076;16-19,5074-5071	1-2,5090-5089[UP5];9-9,5082-5082[SIL];x-x,5075-5075[BULt];20-21,5070-5069[UP3]	..((((.((((((.((((((..&..)))))).))))))-))))..	GCCGCGAGGGAGAGGAAGAGCA&AUUUCUUUAUCUCCC-CGUGAA	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN5542_c0_g1_5081_TPlot.pdf
TRINITY_DN5542_c0_g1:5083	si_s85	TRINITY_DN5542_c0_g1	5072	5097	5083	-33.80	-24.60	0.727810650887574	15	1-3,5097-5095;5-7,5092-5090;8-21,5085-5072	4-4,5094-5093[AILt];x-x,5089-5086[BULt]	((((((((((((((....(((..(((&)))-.)))----))))))))))))))	GCGAGGGAGAGGAAGAGCAGGUCGAG&CUU-UCCU----UUCUUCUUCUUCGC	3	0.999977200196488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5542_c0_g1_5083_TPlot.pdf
TRINITY_DN5542_c0_g1:5087	si_s84	TRINITY_DN5542_c0_g1	5076	5098	5087	-32.30	-21.60	0.668730650154799	10.5	1-4,5098-5095;6-8,5092-5090;9-20,5088-5077	5-5,5094-5093[AILt];x-x,5089-5089[BULt];21-21,5076-5076[UP3]	.((((((((((((.(((..((((&))))-.)))-)))))))))))).	GGGAGAGGAAGAGCAGGUCGAGG&UCUU-UCCU-UUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5542_c0_g1_5087_TPlot.pdf
TRINITY_DN5542_c0_g1:5630	si_a267	TRINITY_DN5542_c0_g1	5618	5639	5630	-37.90	-25.80	0.680738786279683	7	1-13,5639-5627;15-17,5624-5622	14-14,5626-5625[AILt];18-21,5621-5618[UP3]	....(((..(((((((((((((&)))))))))))))-.)))....	UCCAUCGAGAGGCGUUUGCCUU&AGGGCAAACGCCU-ACGAAAAG	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a267_TRINITY_DN5542_c0_g1_5630_TPlot.pdf
TRINITY_DN5542_c0_g1:5858	si_s87	TRINITY_DN5542_c0_g1	5847	5870	5858	-32.90	-23.60	0.717325227963526	10.5	1-3,5870-5868;4-9,5866-5861;10-19,5858-5849	x-x,5867-5867[BULt];x-x,5860-5859[BULt];20-21,5848-5847[UP3]	..((((((((((..((((((.(((&)))-))))))--))))))))))..	CCGCGAAGAAGAUUGGAGAGAGAG&UUC-CUUUCU--UCUUCUUCGCUU	4	0.999999929848069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5542_c0_g1_5858_TPlot.pdf
TRINITY_DN5542_c0_g1:5862	si_s80	TRINITY_DN5542_c0_g1	5851	5871	5862	-28.20	-24.80	0.879432624113475	7	2-11,5870-5861;14-21,5858-5851	1-1,5871-5871[UP5];12-13,5860-5859[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	GAAGAAGAUUGGAGAGAGAGU&UUUUUCUUUCCUUUCUUCUUC	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5542_c0_g1_5862_TPlot.pdf
TRINITY_DN5542_c0_g1:5871	si_s890	TRINITY_DN5542_c0_g1	5860	5883	5871	-29.50	-19.60	0.664406779661017	9	1-7,5883-5877;8-21,5873-5860	x-x,5876-5874[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	UGGAGAGAGAGUUUGACAUUUAUU&AAUAAAU---AGGCUUUCUCUUCA	4	0.999975840065604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN5542_c0_g1_5871_TPlot.pdf
TRINITY_DN5542_c0_g1:5873	si_s888	TRINITY_DN5542_c0_g1	5862	5885	5873	-26.80	-17.80	0.664179104477612	9	1-9,5885-5877;10-21,5873-5862	x-x,5876-5874[BULt]	((((((((((((...(((((((((&)))))))))---))))))))))))	GAGAGAGAGUUUGACAUUUAUUUU&AAAAUAAAU---AGGCUUUCUCUU	3	0.999960616924559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN5542_c0_g1_5873_TPlot.pdf
TRINITY_DN5542_c0_g1:5877	si_s887	TRINITY_DN5542_c0_g1	5863	5886	5877	-26.80	-17.70	0.66044776119403	8	1-10,5886-5877;11-21,5873-5863	x-x,5876-5874[BULt]	(((((((((((...((((((((((&))))))))))---)))))))))))	AGAGAGAGUUUGACAUUUAUUUUU&AAAAAUAAAU---AGGCUUUCUCU	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN5542_c0_g1_5877_TPlot.pdf
TRINITY_DN5542_c0_g1:7737	si_a785	TRINITY_DN5542_c0_g1	7726	7746	7737	-25.90	-18.80	0.725868725868726	9	1-11,7746-7736;13-21,7734-7726	12-12,7735-7735[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GGGGGUGGGUAAGUAGGGGGG&CUCUUCUAUUUUUCUAUUUUC	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN5542_c0_g1_7737_TPlot.pdf
TRINITY_DN5542_c0_g1:869	si_a63	TRINITY_DN5542_c0_g1	857	878	869	-30.20	-20.62	0.682781456953642	8.5	2-13,877-866;17-21,861-857	1-1,878-878[UP5];14-16,865-862[AILt]	(((((....((((((((((((.&.))))))))))))-...)))))	AGCGGGCGCGGAAGAGGCGAGA&ACUCGCUUCUUUC-AAAUUGUU	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN5542_c0_g1_869_TPlot.pdf
TRINITY_DN5542_c0_g1:872	si_a60	TRINITY_DN5542_c0_g1	861	881	872	-32.20	-21.50	0.667701863354037	10.5	1-2,881-880;5-16,877-866	3-4,879-878[SIL];17-21,865-861[UP3]	.....((((((((((((..((&))..)))))))))))).....	GGCGCGGAAGAGGCGAGAAGA&UCGACUCGCUUCUUUCAAAUU	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN5542_c0_g1_872_TPlot.pdf
TRINITY_DN5542_c0_g1:879	si_s89	TRINITY_DN5542_c0_g1	869	891	879	-35.30	-25.30	0.71671388101983	8.5	1-7,891-885;8-13,881-876;15-20,875-870	x-x,884-882[BULt];14-14,x-x[BULq];21-21,869-869[UP3]	.((((((-((((((...(((((((&)))))))---)))))).)))))).	AGAGGCG-AGAAGAGAGAGAAAGG&CCUUUCU---UCUUCUUCGCUUCG	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5542_c0_g1_879_TPlot.pdf
TRINITY_DN5543_c0_g1:1265	si_s621	TRINITY_DN5543_c0_g1	1254	1274	1265	-32.50	-22.50	0.692307692307692	10.5	4-10,1271-1265;12-20,1263-1255	1-3,1274-1272[UP5];11-11,1264-1264[SIL];21-21,1254-1254[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AGCGGGGGGAGCGCUUGGUGC&AAUCCAAGCGAUCUUUUCGUA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN5543_c0_g1_1265_TPlot.pdf
TRINITY_DN5543_c0_g1:2244	si_s599	TRINITY_DN5543_c0_g1	2226	2253	2244	-27.80	-18.50	0.665467625899281	14	4-14,2250-2240;15-21,2232-2226	1-3,2253-2251[UP5];x-x,2239-2233[BULt]	(((((((.......(((((((((((...&...)))))))))))-------)))))))	GGAAAGGCGAGCCCGUUCGCUUGGAGCA&AAAUCCAAGCGAAU-------CUUUUUU	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN5543_c0_g1_2244_TPlot.pdf
TRINITY_DN5543_c0_g1:833	si_a68	TRINITY_DN5543_c0_g1	821	842	833	-25.40	-16.90	0.665354330708661	10.5	1-8,842-835;11-17,832-826;18-20,824-822	9-10,834-833[SIL];x-x,825-825[BULt];21-21,821-821[UP3]	.(((.(((((((..((((((((&))))))))..)))))))-))).	CGAGUAGACGAUGAGGAGGAGG&CUUCUUUCAAAUUGUUU-UUCA	4	0.999999999999029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5543_c0_g1_833_TPlot.pdf
TRINITY_DN55446_c0_g1:280	si_s71	TRINITY_DN55446_c0_g1	268	293	280	-25.70	-18.10	0.704280155642023	11.5	1-7,293-287;8-18,282-272;19-21,270-268	x-x,286-283[BULt];x-x,271-271[BULt]	(((.(((((((((((....(((((((&)))))))----)))))))))))-)))	AGGUGAAGAAAAAGAUACCGUAGAAG&CUUCUAU----UUUUUUUCUUU-CCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN55446_c0_g1_280_TPlot.pdf
TRINITY_DN55446_c0_g1:281	si_s70	TRINITY_DN55446_c0_g1	269	294	281	-25.80	-16.80	0.651162790697674	12.5	2-8,293-287;9-19,282-272;20-21,270-269	1-1,294-294[UP5];x-x,286-283[BULt];x-x,271-271[BULt]	((.(((((((((((....(((((((.&.)))))))----)))))))))))-))	GGUGAAGAAAAAGAUACCGUAGAAGA&ACUUCUAU----UUUUUUUCUUU-CC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN55446_c0_g1_281_TPlot.pdf
TRINITY_DN55446_c0_g1:320	si_s91	TRINITY_DN55446_c0_g1	305	329	320	-34.70	-23.30	0.671469740634006	8.5	1-11,329-319;12-13,315-314;14-20,312-306	x-x,318-316[BULt];x-x,313-313[BULt];21-21,305-305[UP3]	.(((((((.((...(((((((((((&)))))))))))---))-))))))).	ACUGAAGCUGAGUUAGAAGAAGAAA&UUUCUUCUUCU---UC-GCUUCGGA	4	0.999999999998878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN55446_c0_g1_320_TPlot.pdf
TRINITY_DN55446_c0_g1:321	si_s90	TRINITY_DN55446_c0_g1	306	330	321	-35.30	-23.50	0.6657223796034	8.5	2-12,329-319;13-14,315-314;15-21,312-306	1-1,330-330[UP5];x-x,318-316[BULt];x-x,313-313[BULt]	(((((((.((...(((((((((((.&.)))))))))))---))-)))))))	CUGAAGCUGAGUUAGAAGAAGAAAU&CUUUCUUCUUCU---UC-GCUUCGG	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN55446_c0_g1_321_TPlot.pdf
TRINITY_DN5546_c0_g1:370	si_s192	TRINITY_DN5546_c0_g1	360	379	370	-28.00	-18.40	0.657142857142857	6.5	1-3,379-377;5-15,375-365;17-21,364-360	4-4,376-376[SIL];16-16,x-x[BULq]	(((((-(((((((((((.(((&))).))))))))))).)))))	GUACA-UCUGAGAUAGUGGUU&AACGAUUAUUUUGGAAUGUAC	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN5546_c0_g1_370_TPlot.pdf
TRINITY_DN55477_c0_g1:722	si_s48	TRINITY_DN55477_c0_g1	711	731	722	-28.80	-20.10	0.697916666666667	13.5	7-9,725-723;11-21,721-711	1-6,731-726[UP5];10-10,722-722[SIL]	(((((((((((.(((......&......))).)))))))))))	GCUGACUUGAACUCCUCGAGU&AUAAUUGGAUUUCAAGUUAGC	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN55477_c0_g1_722_TPlot.pdf
TRINITY_DN5547_c0_g1:2310	si_a588	TRINITY_DN5547_c0_g1	2299	2321	2310	-29.00	-20.20	0.696551724137931	8	1-8,2321-2314;9-18,2311-2302	x-x,2313-2312[BULt];19-21,2301-2299[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	ACCAUUCUGUCCUCUUUUUGUUA&UAACAAGA--AGGACAGAAUUUU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN5547_c0_g1_2310_TPlot.pdf
TRINITY_DN5547_c0_g1:2315	si_a585	TRINITY_DN5547_c0_g1	2302	2324	2315	-31.60	-24.90	0.787974683544304	6	2-11,2323-2314;12-21,2311-2302	1-1,2324-2324[UP5];x-x,2313-2312[BULt]	((((((((((..((((((((((.&.))))))))))--))))))))))	AUUCUGUCCUCUUUUUGUUACAG&UUGUAACAAGA--AGGACAGAAU	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN5547_c0_g1_2315_TPlot.pdf
TRINITY_DN5547_c0_g1:2318	si_a582	TRINITY_DN5547_c0_g1	2305	2328	2318	-32.80	-22.90	0.698170731707317	5.5	1-3,2328-2326;4-14,2324-2314;15-21,2311-2305	x-x,2325-2325[BULt];x-x,2313-2312[BULt]	(((((((..(((((((((((.(((&)))-)))))))))))--)))))))	CUGUCCUCUUUUUGUUACAGAACA&UGU-UUGUAACAAGA--AGGACAG	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN5547_c0_g1_2318_TPlot.pdf
TRINITY_DN5547_c0_g1:312	si_s316	TRINITY_DN5547_c0_g1	301	325	312	-31.50	-20.60	0.653968253968254	13.5	1-9,325-317;10-17,312-305	x-x,316-313[BULt];18-21,304-301[UP3]	....((((((((....(((((((((&)))))))))----))))))))....	GUUAUAACAAGACUUAGGGACAGAG&UUCUGUCCU----UCUUGUUACAAA	3	0.999999783320533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN5547_c0_g1_312_TPlot.pdf
TRINITY_DN55489_c0_g1:611	si_s192	TRINITY_DN55489_c0_g1	600	621	611	-28.00	-18.20	0.65	7	1-9,621-613;10-18,611-603	x-x,612-612[BULt];19-21,602-600[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AUCCAUUCCAAACAUAGUUGUU&AACGAUUAU-UUUGGAAUGUAC	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN55489_c0_g1_611_TPlot.pdf
TRINITY_DN55489_c0_g1:613	si_s191	TRINITY_DN55489_c0_g1	601	622	613	-26.60	-19.50	0.733082706766917	6	1-10,622-613;11-19,611-603	x-x,612-612[BULt];20-21,602-601[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	UCCAUUCCAAACAUAGUUGUUA&UAACGAUUAU-UUUGGAAUGUA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN55489_c0_g1_613_TPlot.pdf
TRINITY_DN55489_c0_g1:614	si_s190	TRINITY_DN55489_c0_g1	602	623	614	-28.00	-19.50	0.696428571428571	6	2-11,622-613;12-20,611-603	1-1,623-623[UP5];x-x,612-612[BULt];21-21,602-602[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	CCAUUCCAAACAUAGUUGUUAA&GUAACGAUUAU-UUUGGAAUGU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN55489_c0_g1_614_TPlot.pdf
TRINITY_DN55489_c0_g1:615	si_s189	TRINITY_DN55489_c0_g1	603	625	615	-27.90	-19.70	0.706093189964158	6	1-3,625-623;4-12,621-613;13-21,611-603	x-x,622-622[BULt];x-x,612-612[BULt]	(((((((((.(((((((((.(((&)))-)))))))))-)))))))))	CAUUCCAAACAUAGUUGUUAACU&AGU-AACGAUUAU-UUUGGAAUG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN55489_c0_g1_615_TPlot.pdf
TRINITY_DN554_c0_g1:1199	si_a784	TRINITY_DN554_c0_g1	1184	1208	1199	-24.70	-16.80	0.680161943319838	14	2-10,1207-1199;11-19,1194-1186	1-1,1208-1208[UP5];x-x,1198-1195[BULt];20-21,1185-1184[UP3]	..(((((((((....(((((((((.&.)))))))))----)))))))))..	GCAGUAGAGGAGGAUAUAGAGGAGA&ACUCUUCUAU----UUUUCUAUUUU	3	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN554_c0_g1_1199_TPlot.pdf
TRINITY_DN554_c0_g1:1321	si_a869	TRINITY_DN554_c0_g1	1310	1330	1321	-24.80	-17.10	0.689516129032258	17	9-20,1322-1311	1-8,1330-1323[UP5];21-21,1310-1310[UP3]	.((((((((((((........&........)))))))))))).	AUGCAACUAAGUCAACAGUUU&UUAUUAAAGAUUUAGUUGCAA	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN554_c0_g1_1321_TPlot.pdf
TRINITY_DN55501_c0_g1:618	si_s485	TRINITY_DN55501_c0_g1	607	627	618	-18.10	-12.40	0.685082872928177	7.5	1-3,627-625;6-19,622-609	4-5,624-623[SIL];20-21,608-607[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	AAUGUAUUUAGAUAAAAUUAG&CUAUAUUUAUUUAAAUAUAAA	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN55501_c0_g1_618_TPlot.pdf
TRINITY_DN55506_c0_g1:208	si_s606	TRINITY_DN55506_c0_g1	197	217	208	-28.20	-19.10	0.677304964539007	6.5	2-12,216-206;15-19,203-199	1-1,217-217[UP5];13-14,205-204[SIL];20-21,198-197[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	CCGGUUUUUAAGAGAUUCGCC&AGCGAAUCUUUUUUAAAUCCA	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN55506_c0_g1_208_TPlot.pdf
TRINITY_DN55506_c0_g1:209	si_s605	TRINITY_DN55506_c0_g1	198	218	209	-27.50	-19.10	0.694545454545455	7.5	3-13,216-206;16-20,203-199	1-2,218-217[UP5];14-15,205-204[SIL];21-21,198-198[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	CGGUUUUUAAGAGAUUCGCCA&AAGCGAAUCUUUUUUAAAUCC	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN55506_c0_g1_209_TPlot.pdf
TRINITY_DN55511_c0_g1:355	si_s312	TRINITY_DN55511_c0_g1	344	366	355	-29.00	-19.90	0.686206896551724	14	5-9,362-358;10-20,355-345	1-4,366-363[UP5];x-x,357-356[BULt];21-21,344-344[UP3]	.(((((((((((..(((((....&....)))))--))))))))))).	GGACGAGAAGGAUUCAGGAGGUG&AAAAUUCUG--UCCUUCUUGUUA	2	0.999835451332914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN55511_c0_g1_355_TPlot.pdf
TRINITY_DN5551_c0_g1:1538	si_s478	TRINITY_DN5551_c0_g1	1525	1547	1538	-27.20	-18.40	0.676470588235294	9	2-10,1546-1538;11-19,1535-1527	1-1,1547-1547[UP5];x-x,1537-1536[BULt];20-21,1526-1525[UP3]	..(((((((((..(((((((((.&.)))))))))--)))))))))..	AGAGGUAAAUAAUUAGGAUCUGG&ACGGAUCCUA--UAUUUAUUUAA	2	0.897474654356849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN5551_c0_g1_1538_TPlot.pdf
TRINITY_DN5551_c0_g1:1539	si_s477	TRINITY_DN5551_c0_g1	1526	1548	1539	-27.10	-18.40	0.678966789667897	10	3-11,1546-1538;12-20,1535-1527	1-2,1548-1547[UP5];x-x,1537-1536[BULt];21-21,1526-1526[UP3]	.(((((((((..(((((((((..&..)))))))))--))))))))).	GAGGUAAAUAAUUAGGAUCUGGU&AACGGAUCCUA--UAUUUAUUUA	2	0.921055828159047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN5551_c0_g1_1539_TPlot.pdf
TRINITY_DN5551_c0_g1:21	si_a398	TRINITY_DN5551_c0_g1	5	30	21	-22.40	-15.70	0.700892857142857	16	2-10,29-21;11-20,15-6	1-1,30-30[UP5];x-x,20-16[BULt];21-21,5-5[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	GAAGCAAAGCGGUCGCAUUCUGUGUA&AAUAUAGAAU-----UGUUUUGUUUA	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN5551_c0_g1_21_TPlot.pdf
TRINITY_DN5551_c0_g1:325	si_a405	TRINITY_DN5551_c0_g1	314	334	325	-19.80	-14.20	0.717171717171717	11	5-20,330-315	1-4,334-331[UP5];21-21,314-314[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUGGAUAUAGAUAAAACUAUG&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999045851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5551_c0_g1_325_TPlot.pdf
TRINITY_DN5551_c0_g1:362	si_a866	TRINITY_DN5551_c0_g1	351	371	362	-23.30	-15.50	0.665236051502146	10.5	6-20,366-352	1-5,371-367[UP5];21-21,351-351[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGCUAAAUCUUUAAUCGAGA&CAAUUAUUAAAGAUUUAGUUG	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN5551_c0_g1_362_TPlot.pdf
TRINITY_DN5551_c0_g1:363	si_a865	TRINITY_DN5551_c0_g1	352	373	363	-24.00	-16.90	0.704166666666667	7.5	1-2,373-372;5-6,369-368;7-21,366-352	3-4,371-370[SIL];x-x,367-367[BULt]	(((((((((((((((.((..((&))..))-)))))))))))))))	AGCUAAAUCUUUAAUCGAGAGG&CCAAUU-AUUAAAGAUUUAGUU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN5551_c0_g1_363_TPlot.pdf
TRINITY_DN55526_c0_g1:904	si_s666	TRINITY_DN55526_c0_g1	894	913	904	-31.30	-21.90	0.699680511182109	4	1-12,913-902;14-16,900-898;18-20,897-895	13-13,901-901[SIL];17-17,x-x[BULq];21-21,894-894[UP3]	.(((-(((.((((((((((((&)))))))))))).))).))).	GUCU-UAAGCAAUUCGGUCCC&GGGAUCGAAUUGAUUAUAGAA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN55526_c0_g1_904_TPlot.pdf
TRINITY_DN5552_c0_g1:320	si_s246	TRINITY_DN5552_c0_g1	307	329	320	-31.70	-22.00	0.694006309148265	8.5	2-11,328-319;12-19,316-309	1-1,329-329[UP5];x-x,318-317[BULt];20-21,308-307[UP3]	..((((((((..((((((((((.&.))))))))))--))))))))..	UAAUGUCGGGUAAAAUGUCUAUA&AAUAGGCAUUU--CCCGAUAUAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN5552_c0_g1_320_TPlot.pdf
TRINITY_DN5552_c0_g1:847	si_s1	TRINITY_DN5552_c0_g1	836	856	847	-18.70	-13.18	0.704812834224599	8.5	1-8,856-849;12-21,845-836	9-11,848-846[SIL]	((((((((((...((((((((&))))))))...))))))))))	UAAUAAUGAGGUUUGUAAAGA&UUUUUAUAUUACUUAUUAUUA	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN5552_c0_g1_847_TPlot.pdf
TRINITY_DN55535_c0_g1:505	si_a764	TRINITY_DN55535_c0_g1	493	514	505	-28.90	-22.00	0.761245674740484	8	2-11,513-504;12-20,502-494	1-1,514-514[UP5];x-x,503-503[BULt];21-21,493-493[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	GUGAGUCAGUCCAAGGAUCCAG&UUGGGUUUUUG-AUUGAUUCAA	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN55535_c0_g1_505_TPlot.pdf
TRINITY_DN5554_c0_g1:1830	si_a411	TRINITY_DN5554_c0_g1	1819	1839	1830	-17.90	-12.60	0.70391061452514	5	1-8,1839-1832;10-18,1830-1822	9-9,1831-1831[SIL];19-21,1821-1819[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UACUAUUUAAAUUUAAACAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.999978654488071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN5554_c0_g1_1830_TPlot.pdf
TRINITY_DN55551_c0_g1:58	si_s191	TRINITY_DN55551_c0_g1	47	67	58	-26.60	-17.90	0.672932330827068	8.5	1-5,67-63;7-19,61-49	6-6,62-62[SIL];20-21,48-47[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UUCAUUCCGAGGUGACUGUUA&UAACGAUUAUUUUGGAAUGUA	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN55551_c0_g1_58_TPlot.pdf
TRINITY_DN5555_c0_g1:1134	si_a72	TRINITY_DN5555_c0_g1	1123	1144	1134	-21.90	-18.60	0.849315068493151	6	1-4,1144-1141;5-21,1139-1123	x-x,1140-1140[BULt]	(((((((((((((((((.((((&))))-)))))))))))))))))	AUAAUGGAGGACAGUUUAGAGA&UUUC-AAAUUGUUUUUCAUUAU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN5555_c0_g1_1134_TPlot.pdf
TRINITY_DN5556_c0_g1:1474	si_a139	TRINITY_DN5556_c0_g1	1463	1482	1474	-25.90	-17.90	0.691119691119691	8.5	2-4,1481-1479;8-21,1476-1463	1-1,1482-1482[UP5];5-7,1478-1477[AILq]	((((((((((((((..-(((.&.)))...))))))))))))))	AAGCGACAGCGAUUCC-UACG&AGUAAUUAAUCGUUGUUGUUU	2	0.93690066453088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN5556_c0_g1_1474_TPlot.pdf
TRINITY_DN5556_c0_g1:2683	si_s630	TRINITY_DN5556_c0_g1	2673	2692	2683	-35.60	-27.50	0.772471910112359	4.5	1-13,2692-2680;15-15,2679-2679;17-21,2677-2673	14-14,x-x[BULq];16-16,2678-2678[SIL]	(((((.(-(((((((((((((&))))))))))))).).)))))	GCAGAGG-CUGCGAGAAGAUC&GAUCUUUUCGUAGGCGUUUGC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN5556_c0_g1_2683_TPlot.pdf
TRINITY_DN5556_c0_g1:2996	si_a625	TRINITY_DN5556_c0_g1	2985	3004	2996	-30.60	-20.00	0.65359477124183	12	4-7,3001-2998;9-21,2997-2985	1-3,3004-3002[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	GGAGUCGGCGUGG-ACGCGCG&UAGGCGUAUUAUGUCGAUUUU	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN5556_c0_g1_2996_TPlot.pdf
TRINITY_DN5557_c0_g1:2097	si_s808	TRINITY_DN5557_c0_g1	2086	2109	2097	-28.60	-19.50	0.681818181818182	13	2-6,2108-2104;7-19,2100-2088	1-1,2109-2109[UP5];x-x,2103-2101[BULt];20-21,2087-2086[UP3]	..(((((((((((((...(((((.&.)))))---)))))))))))))..	UCAGGAAGAGGUGAUCAGGAGGAG&AUCUUC---GUUACCUUUUCUUAA	3	0.99999976975344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5557_c0_g1_2097_TPlot.pdf
TRINITY_DN5557_c0_g1:2098	si_s807	TRINITY_DN5557_c0_g1	2087	2110	2098	-28.90	-19.50	0.674740484429066	14	3-7,2108-2104;8-20,2100-2088	1-2,2110-2109[UP5];x-x,2103-2101[BULt];21-21,2087-2087[UP3]	.(((((((((((((...(((((..&..)))))---))))))))))))).	CAGGAAGAGGUGAUCAGGAGGAGG&UAUCUUC---GUUACCUUUUCUUA	4	0.99999997551886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5557_c0_g1_2098_TPlot.pdf
TRINITY_DN5557_c0_g1:2099	si_s806	TRINITY_DN5557_c0_g1	2088	2111	2099	-28.60	-19.30	0.674825174825175	15	4-8,2108-2104;9-21,2100-2088	1-3,2111-2109[UP5];x-x,2103-2101[BULt]	(((((((((((((...(((((...&...)))))---)))))))))))))	AGGAAGAGGUGAUCAGGAGGAGGA&UUAUCUUC---GUUACCUUUUCUU	2	0.999995017964448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5557_c0_g1_2099_TPlot.pdf
TRINITY_DN5558_c0_g1:614	si_s569	TRINITY_DN5558_c0_g1	599	623	614	-30.60	-20.40	0.666666666666667	10.5	1-10,623-614;11-12,610-609;13-19,607-601	x-x,613-611[BULt];x-x,608-608[BULt];20-21,600-599[UP3]	..(((((((.((...((((((((((&))))))))))---))-)))))))..	CAUUUUGUUGCCAAAUUGUCCCGAA&UUCGGGACAA---GG-AAUAAAAAA	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN5558_c0_g1_614_TPlot.pdf
TRINITY_DN5559_c0_g1:326	si_a408	TRINITY_DN5559_c0_g1	315	335	326	-20.10	-13.10	0.651741293532338	8	1-15,335-321	16-21,320-315[UP3]	......(((((((((((((((&)))))))))))))))......	GAAGAUAAUAUAAAUAAAGCA&UGUUUUGUUUAUAUUUAAAUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5559_c0_g1_326_TPlot.pdf
TRINITY_DN5559_c0_g1:328	si_a406	TRINITY_DN5559_c0_g1	317	337	328	-19.80	-13.50	0.681818181818182	8	2-17,336-321	1-1,337-337[UP5];18-21,320-317[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGAUAAUAUAAAUAAAGCAGG&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5559_c0_g1_328_TPlot.pdf
TRINITY_DN5559_c0_g1:329	si_a405	TRINITY_DN5559_c0_g1	318	338	329	-19.80	-13.50	0.681818181818182	9	3-18,336-321	1-2,338-337[UP5];19-21,320-318[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAUAAUAUAAAUAAAGCAGGA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5559_c0_g1_329_TPlot.pdf
TRINITY_DN5559_c0_g1:540	si_a410	TRINITY_DN5559_c0_g1	529	549	540	-17.80	-12.10	0.679775280898876	7.5	1-14,549-536	15-21,535-529[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCUUCGAAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.99999999999079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5559_c0_g1_540_TPlot.pdf
TRINITY_DN5559_c0_g1:542	si_a408	TRINITY_DN5559_c0_g1	531	551	542	-20.10	-14.70	0.731343283582089	6.5	1-16,551-536	17-21,535-531[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCUUCGAAUAUAAACAAAAUA&UGUUUUGUUUAUAUUUAAAUA	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5559_c0_g1_542_TPlot.pdf
TRINITY_DN5559_c0_g1:546	si_a404	TRINITY_DN5559_c0_g1	535	555	546	-21.70	-15.60	0.71889400921659	7.5	4-20,552-536	1-3,555-553[UP5];21-21,535-535[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGAAUAUAAACAAAAUAAAUG&GAAUUGUUUUGUUUAUAUUUA	4	0.999985278941187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN5559_c0_g1_546_TPlot.pdf
TRINITY_DN555_c0_g2:2413	si_a451	TRINITY_DN555_c0_g2	2402	2422	2413	-23.60	-15.50	0.656779661016949	8.5	2-9,2421-2414;12-18,2411-2405	1-1,2422-2422[UP5];10-11,2413-2412[SIL];19-21,2404-2402[UP3]	...(((((((..((((((((.&.))))))))..)))))))...	CGAAUAUGACCUCAAUUAUCA&AGAUAAUUGUUGUUAUAUAUA	3	0.999992358580222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN555_c0_g2_2413_TPlot.pdf
TRINITY_DN555_c0_g2:3002	si_s435	TRINITY_DN555_c0_g2	2991	3011	3002	-20.90	-14.80	0.708133971291866	10	3-17,3009-2995	1-2,3011-3010[UP5];18-21,2994-2991[UP3]	....(((((((((((((((..&..)))))))))))))))....	AACCGUGAUGUGUAAUUGUAA&CAAUAAUUACAUAUUAUAUAU	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN555_c0_g2_3002_TPlot.pdf
TRINITY_DN555_c0_g2:3004	si_s433	TRINITY_DN555_c0_g2	2993	3013	3004	-21.10	-14.80	0.701421800947867	11.5	5-19,3009-2995	1-4,3013-3010[UP5];20-21,2994-2993[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCGUGAUGUGUAAUUGUAAAU&AACAAUAAUUACAUAUUAUAU	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN555_c0_g2_3004_TPlot.pdf
TRINITY_DN555_c0_g2:3005	si_s432	TRINITY_DN555_c0_g2	2994	3014	3005	-21.30	-14.80	0.694835680751174	12.5	6-20,3009-2995	1-5,3014-3010[UP5];21-21,2994-2994[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGUGAUGUGUAAUUGUAAAUA&UAACAAUAAUUACAUAUUAUA	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN555_c0_g2_3005_TPlot.pdf
TRINITY_DN5560_c0_g1:580	si_s528	TRINITY_DN5560_c0_g1	570	589	580	-29.40	-20.20	0.687074829931973	7.5	2-12,588-578;16-21,575-570	1-1,589-589[UP5];13-15,577-576[AILq]	((((((..-(((((((((((.&.)))))))))))...))))))	CGGGUCUU-GGUGAUUUUGAG&UUCGAAAUCAUUUUUGAUCCG	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN5560_c0_g1_580_TPlot.pdf
TRINITY_DN55611_c0_g1:50	si_a474	TRINITY_DN55611_c0_g1	39	59	50	-23.60	-15.98	0.677118644067797	10.5	1-5,59-55;9-20,51-40	6-8,54-52[SIL];21-21,39-39[UP3]	.((((((((((((...(((((&)))))...)))))))))))).	CCUGUAUGGCAGUUUCUGCAU&AUGUAAUUAUUGUUAUAUAGA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN55611_c0_g1_50_TPlot.pdf
TRINITY_DN55611_c0_g1:51	si_a473	TRINITY_DN55611_c0_g1	40	60	51	-23.00	-15.18	0.66	10.5	2-6,59-55;10-21,51-40	1-1,60-60[UP5];7-9,54-52[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	CUGUAUGGCAGUUUCUGCAUU&UAUGUAAUUAUUGUUAUAUAG	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN55611_c0_g1_51_TPlot.pdf
TRINITY_DN5562_c0_g1:1178	si_a454	TRINITY_DN5562_c0_g1	1167	1187	1178	-21.30	-14.10	0.661971830985915	11.5	3-15,1185-1173	1-2,1187-1186[UP5];16-21,1172-1167[UP3]	......(((((((((((((..&..)))))))))))))......	AAACUAAUGUAACAGCAGUAC&UAAUUGUUGUUAUAUAUAAUA	2	0.999956556186919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN5562_c0_g1_1178_TPlot.pdf
TRINITY_DN5563_c0_g1:1983	si_a789	TRINITY_DN5563_c0_g1	1971	1992	1983	-24.80	-16.80	0.67741935483871	8.5	1-5,1992-1988;7-17,1986-1976;18-19,1974-1973	6-6,1987-1987[SIL];x-x,1975-1975[BULt];20-21,1972-1971[UP3]	..((.(((((((((((.(((((&))))).)))))))))))-))..	ACUGCGGAAAUAGAGAUGUGGA&UCUAUUUUUCUAUUUUC-CAAU	3	0.999999998783484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN5563_c0_g1_1983_TPlot.pdf
TRINITY_DN5563_c0_g1:1984	si_a788	TRINITY_DN5563_c0_g1	1972	1993	1984	-24.80	-17.00	0.685483870967742	8.5	2-6,1992-1988;8-18,1986-1976;19-20,1974-1973	1-1,1993-1993[UP5];7-7,1987-1987[SIL];x-x,1975-1975[BULt];21-21,1972-1972[UP3]	.((.(((((((((((.(((((.&.))))).)))))))))))-)).	CUGCGGAAAUAGAGAUGUGGAU&UUCUAUUUUUCUAUUUUC-CAA	3	0.999999992775699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN5563_c0_g1_1984_TPlot.pdf
TRINITY_DN5563_c0_g1:418	si_s87	TRINITY_DN5563_c0_g1	406	432	418	-32.90	-21.40	0.650455927051672	13.5	1-4,432-429;5-17,423-411;18-19,409-408	x-x,428-424[BULt];x-x,410-410[BULt];20-21,407-406[UP3]	..((.(((((((((((((.....((((&))))-----)))))))))))))-))..	UUGCAGGAGAAGAAGAAAUUUAUGGAA&UUCC-----UUUCUUCUUCUUC-GCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5563_c0_g1_418_TPlot.pdf
TRINITY_DN5563_c0_g1:419	si_s86	TRINITY_DN5563_c0_g1	407	433	419	-32.90	-22.30	0.677811550151976	12.5	1-5,433-429;6-18,423-411;19-20,409-408	x-x,428-424[BULt];x-x,410-410[BULt];21-21,407-407[UP3]	.((.(((((((((((((.....(((((&)))))-----)))))))))))))-)).	UGCAGGAGAAGAAGAAAUUUAUGGAAA&UUUCC-----UUUCUUCUUCUUC-GCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5563_c0_g1_419_TPlot.pdf
TRINITY_DN5563_c0_g1:420	si_s85	TRINITY_DN5563_c0_g1	408	434	420	-33.80	-22.10	0.653846153846154	12.5	2-6,433-429;7-19,423-411;20-21,409-408	1-1,434-434[UP5];x-x,428-424[BULt];x-x,410-410[BULt]	((.(((((((((((((.....(((((.&.)))))-----)))))))))))))-))	GCAGGAGAAGAAGAAAUUUAUGGAAAA&CUUUCC-----UUUCUUCUUCUUC-GC	2	0.999999999999376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5563_c0_g1_420_TPlot.pdf
TRINITY_DN5563_c0_g1:422	si_s83	TRINITY_DN5563_c0_g1	411	436	422	-30.90	-20.30	0.656957928802589	15.5	4-8,433-429;9-21,423-411	1-3,436-434[UP5];x-x,428-424[BULt]	(((((((((((((.....(((((...&...)))))-----)))))))))))))	GGAGAAGAAGAAAUUUAUGGAAAACA&UUCUUUCC-----UUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5563_c0_g1_422_TPlot.pdf
TRINITY_DN5564_c0_g1:1266	si_s71	TRINITY_DN5564_c0_g1	1255	1275	1266	-25.70	-16.80	0.653696498054475	6.5	2-6,1274-1270;8-19,1268-1257	1-1,1275-1275[UP5];7-7,1269-1269[SIL];20-21,1256-1255[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CAGAAAGAGAAAAAUUAGAGA&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5564_c0_g1_1266_TPlot.pdf
TRINITY_DN55658_c0_g1:498	si_a397	TRINITY_DN55658_c0_g1	487	507	498	-24.00	-16.40	0.683333333333333	7	1-4,507-504;6-9,501-498;11-21,497-487	5-5,503-502[AILt];10-10,x-x[BULq]	(((((((((((-((((..((((&))))-.)))).)))))))))))	GGACAAAACAA-UCUAGCAUUC&GAAU-AUAGAAUUGUUUUGUUU	2	0.985829357737853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN55658_c0_g1_498_TPlot.pdf
TRINITY_DN55698_c0_g1:1098	si_s66	TRINITY_DN55698_c0_g1	1083	1107	1098	-26.30	-17.50	0.665399239543726	8.5	1-10,1107-1098;11-13,1094-1092;14-20,1090-1084	x-x,1097-1095[BULt];x-x,1091-1091[BULt];21-21,1083-1083[UP3]	.(((((((.(((...((((((((((&))))))))))---)))-))))))).	UGAAAAAAUGAUGAAAGAAGUUGCU&AGCAACUUCU---AUU-UUUUUUCU	4	0.999999996019627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN55698_c0_g1_1098_TPlot.pdf
TRINITY_DN55698_c0_g1:143	si_s795	TRINITY_DN55698_c0_g1	132	152	143	-30.30	-20.30	0.66996699669967	9	3-9,150-144;11-21,142-132	1-2,152-151[UP5];10-10,143-143[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AUGGAGAUAAGUUAUGAGUAA&AAGCUCGUAUUUUAUCUUCGU	2	0.995709762510726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN55698_c0_g1_143_TPlot.pdf
TRINITY_DN55698_c0_g1:441	si_s608	TRINITY_DN55698_c0_g1	423	450	441	-26.70	-17.60	0.659176029962547	10	1-14,450-437;15-20,429-424	x-x,436-430[BULt];21-21,423-423[UP3]	.((((((.......((((((((((((((&))))))))))))))-------)))))).	GUUGGAUGAAAAAAUUAAAGAAGAUUUG&CGAAUCUUUUUUAA-------AUCCAAG	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN55698_c0_g1_441_TPlot.pdf
TRINITY_DN55698_c0_g1:914	si_a406	TRINITY_DN55698_c0_g1	903	923	914	-19.80	-13.50	0.681818181818182	10	1-15,923-909	16-21,908-903[UP3]	......(((((((((((((((&)))))))))))))))......	ACCUUCUAUAGAUAAAGCAGU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN55698_c0_g1_914_TPlot.pdf
TRINITY_DN556_c0_g1:1257	si_s11	TRINITY_DN556_c0_g1	1244	1266	1257	-23.60	-16.38	0.694067796610169	9	2-15,1265-1252;18-20,1247-1245	1-1,1266-1266[UP5];16-17,1251-1248[AILt];21-21,1244-1244[UP3]	.(((....((((((((((((((.&.))))))))))))))--..))).	UUCAGAAGAUAGUAGUGAUGAGG&ACUUAUUAUUACUAU--AUUGAU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN556_c0_g1_1257_TPlot.pdf
TRINITY_DN556_c0_g1:1262	si_s6	TRINITY_DN556_c0_g1	1251	1271	1262	-21.70	-15.90	0.732718894009217	14.5	7-20,1265-1252	1-6,1271-1266[UP5];21-21,1251-1251[UP3]	.((((((((((((((......&......)))))))))))))).	GAUAGUAGUGAUGAGGAGGAA&AUAUUACUUAUUAUUACUAUA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN556_c0_g1_1262_TPlot.pdf
TRINITY_DN556_c0_g1:1535	si_a141	TRINITY_DN556_c0_g1	1524	1544	1535	-23.80	-16.20	0.680672268907563	14.5	7-20,1538-1525	1-6,1544-1539[UP5];21-21,1524-1524[UP3]	.((((((((((((((......&......)))))))))))))).	GAAGAUAGCGACGAUGAAACA&UAAUUAAUCGUUGUUGUUUUA	4	0.999999983116437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN556_c0_g1_1535_TPlot.pdf
TRINITY_DN556_c0_g1:1966	si_s79	TRINITY_DN556_c0_g1	1954	1975	1966	-26.20	-20.10	0.767175572519084	7	1-11,1975-1965;12-19,1963-1956	x-x,1964-1964[BULt];20-21,1955-1954[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AUGGAGGAGGCGAAAGAAGAAG&UUUUUUCUUUC-CUUUCUUCUU	3	0.999999997940772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN556_c0_g1_1966_TPlot.pdf
TRINITY_DN556_c0_g1:1968	si_s77	TRINITY_DN556_c0_g1	1956	1977	1968	-25.50	-19.70	0.772549019607843	7.5	3-13,1975-1965;14-21,1963-1956	1-2,1977-1976[UP5];x-x,1964-1964[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GGAGGAGGCGAAAGAAGAAGUU&UUUUUUUUCUUUC-CUUUCUUC	3	0.999999995082417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN556_c0_g1_1968_TPlot.pdf
TRINITY_DN556_c0_g1:1973	si_s87	TRINITY_DN556_c0_g1	1961	1982	1973	-32.90	-22.90	0.696048632218845	8.5	2-5,1981-1978;8-16,1975-1967;17-21,1965-1961	1-1,1982-1982[UP5];6-7,1977-1976[SIL];x-x,1966-1966[BULt]	(((((.(((((((((..((((.&.))))..)))))))))-)))))	AGGCGAAAGAAGAAGUUGGGGU&UUCCUUUCUUCUUCUU-CGCUU	4	0.999999999996362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN556_c0_g1_1973_TPlot.pdf
TRINITY_DN556_c0_g1:2108	si_s67	TRINITY_DN556_c0_g1	2096	2117	2108	-25.60	-17.10	0.66796875	9.5	1-2,2117-2116;4-12,2114-2106;13-20,2104-2097	3-3,2115-2115[SIL];x-x,2105-2105[BULt];21-21,2096-2096[UP3]	.((((((((.(((((((((.((&)).)))))))))-)))))))).	UGGAGGAAACGAUAGGGGUGGC&GCAACUUCUAUU-UUUUUUCUU	3	0.999999999976039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN556_c0_g1_2108_TPlot.pdf
TRINITY_DN556_c0_g1:2109	si_s66	TRINITY_DN556_c0_g1	2097	2118	2109	-26.30	-17.10	0.650190114068441	8	2-3,2117-2116;5-13,2114-2106;14-21,2104-2097	1-1,2118-2118[UP5];4-4,2115-2115[SIL];x-x,2105-2105[BULt]	((((((((.(((((((((.((.&.)).)))))))))-))))))))	GGAGGAAACGAUAGGGGUGGCG&AGCAACUUCUAUU-UUUUUUCU	4	0.999999999970129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN556_c0_g1_2109_TPlot.pdf
TRINITY_DN556_c0_g1:607	si_s68	TRINITY_DN556_c0_g1	596	616	607	-23.10	-15.10	0.653679653679654	8.5	3-5,614-612;7-19,610-598	1-2,616-615[UP5];6-6,611-611[SIL];20-21,597-596[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	CCAGAAGAAAGAUAGUAGUAG&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN556_c0_g1_607_TPlot.pdf
TRINITY_DN55706_c0_g1:380	si_s806	TRINITY_DN55706_c0_g1	369	389	380	-28.60	-19.70	0.688811188811189	9	1-7,389-383;10-21,380-369	8-9,382-381[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	GAGGAGGGGUGAAAGGGAUAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999745227742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN55706_c0_g1_380_TPlot.pdf
TRINITY_DN55706_c0_g1:457	si_s79	TRINITY_DN55706_c0_g1	445	466	457	-26.20	-17.40	0.66412213740458	5	1-15,466-452;16-18,450-448	x-x,451-451[BULt];19-21,447-445[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	AUUAGGCAAAGGAAAGAAAAAG&UUUUUUCUUUCCUUU-CUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN55706_c0_g1_457_TPlot.pdf
TRINITY_DN55706_c0_g1:458	si_s78	TRINITY_DN55706_c0_g1	446	467	458	-26.20	-17.80	0.679389312977099	5.5	2-16,466-452;17-19,450-448	1-1,467-467[UP5];x-x,451-451[BULt];20-21,447-446[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	UUAGGCAAAGGAAAGAAAAAGG&UUUUUUUCUUUCCUUU-CUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN55706_c0_g1_458_TPlot.pdf
TRINITY_DN55706_c0_g1:459	si_s77	TRINITY_DN55706_c0_g1	447	468	459	-25.50	-19.40	0.76078431372549	4.5	1-17,468-452;18-20,450-448	x-x,451-451[BULt];21-21,447-447[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	UAGGCAAAGGAAAGAAAAAGGA&UUUUUUUUCUUUCCUUU-CUUC	2	0.999999190468162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN55706_c0_g1_459_TPlot.pdf
TRINITY_DN55706_c0_g1:460	si_s76	TRINITY_DN55706_c0_g1	448	469	460	-23.60	-19.40	0.822033898305085	4.5	2-18,468-452;19-21,450-448	1-1,469-469[UP5];x-x,451-451[BULt]	(((.(((((((((((((((((.&.)))))))))))))))))-)))	AGGCAAAGGAAAGAAAAAGGAA&AUUUUUUUUCUUUCCUUU-CUU	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN55706_c0_g1_460_TPlot.pdf
TRINITY_DN55706_c0_g1:461	si_s75	TRINITY_DN55706_c0_g1	449	470	461	-24.00	-18.80	0.783333333333333	6.5	3-19,468-452;20-21,450-449	1-2,470-469[UP5];x-x,451-451[BULt]	((.(((((((((((((((((..&..)))))))))))))))))-))	GGCAAAGGAAAGAAAAAGGAAG&UAUUUUUUUUCUUUCCUUU-CU	2	0.999543407832817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN55706_c0_g1_461_TPlot.pdf
TRINITY_DN55706_c0_g1:462	si_s74	TRINITY_DN55706_c0_g1	451	472	462	-25.00	-18.50	0.74	7	1-2,472-471;4-20,468-452	3-3,470-469[AILt];21-21,451-451[UP3]	.(((((((((((((((((..((&))-.))))))))))))))))).	CAAAGGAAAGAAAAAGGAAGAG&CU-AUUUUUUUUCUUUCCUUUC	0	0.325466382409329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN55706_c0_g1_462_TPlot.pdf
TRINITY_DN55706_c0_g1:463	si_s73	TRINITY_DN55706_c0_g1	452	473	463	-24.00	-20.10	0.8375	6	1-3,473-471;5-21,468-452	4-4,470-469[AILt]	(((((((((((((((((..(((&)))-.)))))))))))))))))	AAAGGAAAGAAAAAGGAAGAGA&UCU-AUUUUUUUUCUUUCCUUU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN55706_c0_g1_463_TPlot.pdf
TRINITY_DN55706_c0_g1:464	si_s72	TRINITY_DN55706_c0_g1	453	474	464	-24.10	-20.20	0.838174273858921	6	1-4,474-471;6-21,468-453	5-5,470-469[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	AAGGAAAGAAAAAGGAAGAGAA&UUCU-AUUUUUUUUCUUUCCUU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN55706_c0_g1_464_TPlot.pdf
TRINITY_DN55706_c0_g1:465	si_s71	TRINITY_DN55706_c0_g1	454	475	465	-25.70	-22.20	0.863813229571984	6	1-5,475-471;7-21,468-454	6-6,470-469[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	AGGAAAGAAAAAGGAAGAGAAG&CUUCU-AUUUUUUUUCUUUCCU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN55706_c0_g1_465_TPlot.pdf
TRINITY_DN55706_c0_g1:466	si_s70	TRINITY_DN55706_c0_g1	455	476	466	-25.80	-20.90	0.810077519379845	7	2-6,475-471;8-21,468-455	1-1,476-476[UP5];7-7,470-469[AILt]	((((((((((((((..(((((.&.)))))-.))))))))))))))	GGAAAGAAAAAGGAAGAGAAGA&ACUUCU-AUUUUUUUUCUUUCC	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN55706_c0_g1_466_TPlot.pdf
TRINITY_DN55706_c0_g1:467	si_s69	TRINITY_DN55706_c0_g1	456	477	467	-23.40	-17.60	0.752136752136752	9	3-7,475-471;9-21,468-456	1-2,477-476[UP5];8-8,470-469[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GAAAGAAAAAGGAAGAGAAGAA&AACUUCU-AUUUUUUUUCUUUC	3	0.999999840065999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN55706_c0_g1_467_TPlot.pdf
TRINITY_DN55706_c0_g1:478	si_s68	TRINITY_DN55706_c0_g1	467	487	478	-23.10	-15.20	0.658008658008658	10.5	4-8,484-480;10-21,478-467	1-3,487-485[UP5];9-9,479-479[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAGAAGAAGCAGGAGAAG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN55706_c0_g1_478_TPlot.pdf
TRINITY_DN5570_c0_g1:1535	si_a374	TRINITY_DN5570_c0_g1	1525	1544	1535	-25.60	-17.80	0.6953125	5.5	3-14,1542-1531;16-21,1530-1525	1-2,1544-1543[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	AGUUCG-AAUCGUUUUUGACU&GAUCAAAAAUGAUUUCGAAUU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN5570_c0_g1_1535_TPlot.pdf
TRINITY_DN5570_c0_g1:2140	si_a406	TRINITY_DN5570_c0_g1	2129	2149	2140	-19.80	-14.00	0.707070707070707	7.5	1-16,2149-2134	17-21,2133-2129[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUUCAUGUAAAUAAAACAGU&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999939736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5570_c0_g1_2140_TPlot.pdf
TRINITY_DN5570_c0_g1:2141	si_a405	TRINITY_DN5570_c0_g1	2130	2150	2141	-19.80	-15.20	0.767676767676768	6.5	1-17,2150-2134	18-21,2133-2130[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUUCAUGUAAAUAAAACAGUU&AAUUGUUUUGUUUAUAUUUAA	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5570_c0_g1_2141_TPlot.pdf
TRINITY_DN5570_c0_g1:2145	si_a401	TRINITY_DN5570_c0_g1	2134	2154	2145	-22.60	-15.50	0.685840707964602	9	5-21,2150-2134	1-4,2154-2151[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUGUAAAUAAAACAGUUAUUG&AUAGAAUUGUUUUGUUUAUAU	2	0.999745621940372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN5570_c0_g1_2145_TPlot.pdf
TRINITY_DN5570_c0_g1:497	si_s298	TRINITY_DN5570_c0_g1	485	506	497	-30.80	-21.60	0.701298701298701	8	1-11,506-496;12-18,494-488	x-x,495-495[BULt];19-21,487-485[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UCCUUUUCGUAAGUUCCAGUCG&CGAUUGGAAUU-GCGAAAAUUC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN5570_c0_g1_497_TPlot.pdf
TRINITY_DN55716_c0_g1:197	si_a400	TRINITY_DN55716_c0_g1	186	207	197	-22.80	-15.62	0.685087719298246	11	1-6,207-202;10-21,197-186	7-9,201-198[AILt]	((((((((((((....((((((&))))))-...))))))))))))	UAUGGACAGAGCUAGAUCUAUG&UAUAGA-AUUGUUUUGUUUAUA	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN55716_c0_g1_197_TPlot.pdf
TRINITY_DN55725_c0_g1:75	si_a323	TRINITY_DN55725_c0_g1	65	84	75	-26.80	-20.70	0.772388059701492	7.5	1-14,84-71;16-19,70-67	15-15,x-x[BULq];20-21,66-65[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	ACGGAG-AAGGAGAUCGUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN55725_c0_g1_75_TPlot.pdf
TRINITY_DN55725_c0_g1:76	si_a322	TRINITY_DN55725_c0_g1	66	85	76	-27.00	-20.70	0.766666666666667	7	2-15,84-71;17-20,70-67	1-1,85-85[UP5];16-16,x-x[BULq];21-21,66-66[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	CGGAG-AAGGAGAUCGUGGAG&AUCCAUGAUUUUUUUAUUCCU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN55725_c0_g1_76_TPlot.pdf
TRINITY_DN55725_c0_g1:77	si_a321	TRINITY_DN55725_c0_g1	67	86	77	-26.70	-20.40	0.764044943820225	7.5	3-16,84-71;18-21,70-67	1-2,86-85[UP5];17-17,x-x[BULq]	((((-((((((((((((((..&..)))))))))))))).))))	GGAG-AAGGAGAUCGUGGAGU&UAUCCAUGAUUUUUUUAUUCC	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN55725_c0_g1_77_TPlot.pdf
TRINITY_DN55725_c0_g1:78	si_a320	TRINITY_DN55725_c0_g1	67	87	78	-24.40	-17.50	0.717213114754098	9.5	4-17,84-71;19-21,69-67	1-3,87-85[UP5];18-18,70-70[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GGAGAAGGAGAUCGUGGAGUA&UUAUCCAUGAUUUUUUUAUUC	4	0.994930149310453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN55725_c0_g1_78_TPlot.pdf
TRINITY_DN55725_c0_g1:80	si_a318	TRINITY_DN55725_c0_g1	69	89	80	-22.50	-16.10	0.715555555555556	13.5	6-19,84-71	1-5,89-85[UP5];20-21,70-69[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGAAGGAGAUCGUGGAGUAUU&AUUUAUCCAUGAUUUUUUUAU	2	0.999105841890088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN55725_c0_g1_80_TPlot.pdf
TRINITY_DN55725_c0_g1:81	si_a317	TRINITY_DN55725_c0_g1	70	92	81	-24.30	-17.56	0.722633744855967	14.5	1-3,92-90;7-20,84-71	4-6,89-85[AILt];21-21,70-70[UP3]	.((((((((((((((.....(((&)))--...)))))))))))))).	GAAGGAGAUCGUGGAGUAUUGUC&GAU--UUAUCCAUGAUUUUUUUA	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN55725_c0_g1_81_TPlot.pdf
TRINITY_DN55725_c0_g1:82	si_a316	TRINITY_DN55725_c0_g1	71	93	82	-26.30	-17.36	0.660076045627376	14.5	2-4,92-90;8-21,84-71	1-1,93-93[UP5];5-7,89-85[AILt]	((((((((((((((.....(((.&.)))--...))))))))))))))	AAGGAGAUCGUGGAGUAUUGUCG&GGAU--UUAUCCAUGAUUUUUUU	4	0.999999983461381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN55725_c0_g1_82_TPlot.pdf
TRINITY_DN5572_c0_g2:1542	si_a760	TRINITY_DN5572_c0_g2	1532	1551	1542	-31.10	-21.20	0.681672025723473	8	1-10,1551-1542;13-20,1540-1533	11-12,1541-1541[AILq];21-21,1532-1532[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	CUUAGUCAAU-AUCCAGAGGA&UCCUUUGGGUUUUUGAUUGAU	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN5572_c0_g2_1542_TPlot.pdf
TRINITY_DN5572_c0_g2:1543	si_a759	TRINITY_DN5572_c0_g2	1533	1552	1543	-32.60	-21.30	0.653374233128834	7	2-11,1551-1542;14-21,1540-1533	1-1,1552-1552[UP5];12-13,1541-1541[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	UUAGUCAAU-AUCCAGAGGAA&CUCCUUUGGGUUUUUGAUUGA	3	0.999999993978986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5572_c0_g2_1543_TPlot.pdf
TRINITY_DN55742_c0_g1:210	si_a409	TRINITY_DN55742_c0_g1	199	220	210	-19.50	-13.30	0.682051282051282	6.5	1-7,220-214;8-19,212-201	x-x,213-213[BULt];20-21,200-199[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AAAUUUAAAUAUAACACAGGAU&GUUUUGU-UUAUAUUUAAAUAA	0	0.404472507801246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN55742_c0_g1_210_TPlot.pdf
TRINITY_DN55742_c0_g1:211	si_a408	TRINITY_DN55742_c0_g1	200	221	211	-20.10	-13.30	0.661691542288557	7	2-8,220-214;9-20,212-201	1-1,221-221[UP5];x-x,213-213[BULt];21-21,200-200[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	AAUUUAAAUAUAACACAGGAUU&UGUUUUGU-UUAUAUUUAAAUA	2	0.999999992102954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN55742_c0_g1_211_TPlot.pdf
TRINITY_DN55742_c0_g1:212	si_a407	TRINITY_DN55742_c0_g1	201	222	212	-19.80	-13.00	0.656565656565657	8	3-9,220-214;10-21,212-201	1-2,222-221[UP5];x-x,213-213[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	AUUUAAAUAUAACACAGGAUUG&UUGUUUUGU-UUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN55742_c0_g1_212_TPlot.pdf
TRINITY_DN5575_c0_g1:1553	si_s12	TRINITY_DN5575_c0_g1	1542	1562	1553	-22.80	-15.50	0.679824561403509	7	1-13,1562-1550;16-18,1547-1545	14-15,1549-1548[SIL];19-21,1544-1542[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	UUCCAAAUUAGUAAUGAUGAG&CUUAUUAUUACUAUAUUGAUU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN5575_c0_g1_1553_TPlot.pdf
TRINITY_DN5575_c0_g1:1555	si_s10	TRINITY_DN5575_c0_g1	1544	1564	1555	-23.80	-17.00	0.714285714285714	6	2-15,1563-1550;18-20,1547-1545	1-1,1564-1564[UP5];16-17,1549-1548[SIL];21-21,1544-1544[UP3]	.(((..((((((((((((((.&.))))))))))))))..))).	CCAAAUUAGUAAUGAUGAGUU&UACUUAUUAUUACUAUAUUGA	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN5575_c0_g1_1555_TPlot.pdf
TRINITY_DN5575_c0_g1:1557	si_s8	TRINITY_DN5575_c0_g1	1546	1566	1557	-21.30	-15.10	0.708920187793427	11	4-17,1563-1550	1-3,1566-1564[UP5];18-21,1549-1546[UP3]	....((((((((((((((...&...))))))))))))))....	AAAUUAGUAAUGAUGAGUUUG&AUUACUUAUUAUUACUAUAUU	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN5575_c0_g1_1557_TPlot.pdf
TRINITY_DN5575_c0_g1:1558	si_s7	TRINITY_DN5575_c0_g1	1547	1567	1558	-21.70	-15.10	0.695852534562212	12	5-18,1563-1550	1-4,1567-1564[UP5];19-21,1549-1547[UP3]	...((((((((((((((....&....))))))))))))))...	AAUUAGUAAUGAUGAGUUUGU&UAUUACUUAUUAUUACUAUAU	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN5575_c0_g1_1558_TPlot.pdf
TRINITY_DN5575_c0_g1:1561	si_s4	TRINITY_DN5575_c0_g1	1550	1570	1561	-21.60	-15.00	0.694444444444444	14.5	8-21,1563-1550	1-7,1570-1564[UP5]	((((((((((((((.......&.......))))))))))))))	UAGUAAUGAUGAGUUUGUUAG&UUAUAUUACUUAUUAUUACUA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN5575_c0_g1_1561_TPlot.pdf
TRINITY_DN5575_c0_g1:1591	si_a463	TRINITY_DN5575_c0_g1	1579	1600	1591	-19.70	-13.10	0.66497461928934	9	1-13,1600-1588;14-17,1586-1583	x-x,1587-1587[BULt];18-21,1582-1579[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	AUGCUUACAAUGUUAUGUGUGA&UUAUAUAUAAUAU-GUAAUUAU	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5575_c0_g1_1591_TPlot.pdf
TRINITY_DN5575_c0_g1:192	si_a788	TRINITY_DN5575_c0_g1	178	201	192	-24.80	-18.10	0.729838709677419	7	1-13,201-189;17-21,182-178	14-16,188-183[AILt]	(((((......(((((((((((((&)))))))))))))---...)))))	UUGGAUUUUAUUAGAGAAAUAGAA&UUCUAUUUUUCUA---UUUUCCAA	2	0.993115340016426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN5575_c0_g1_192_TPlot.pdf
TRINITY_DN5575_c0_g1:193	si_a787	TRINITY_DN5575_c0_g1	179	202	193	-26.30	-17.50	0.665399239543726	8	2-14,201-189;18-21,182-179	1-1,202-202[UP5];15-17,188-183[AILt]	((((......(((((((((((((.&.)))))))))))))---...))))	UGGAUUUUAUUAGAGAAAUAGAAA&CUUCUAUUUUUCUA---UUUUCCA	2	0.99999999813598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN5575_c0_g1_193_TPlot.pdf
TRINITY_DN5575_c0_g1:428	si_s35	TRINITY_DN5575_c0_g1	417	437	428	-24.00	-17.16	0.715	5	1-15,437-423;20-21,418-417	16-19,422-419[SIL]	((....(((((((((((((((&)))))))))))))))....))	CCUACAAUUAGAGAUUUAGUU&AACUAAAUCUUUAAUAAUUGG	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN5575_c0_g1_428_TPlot.pdf
TRINITY_DN5575_c0_g1:430	si_s33	TRINITY_DN5575_c0_g1	419	439	430	-24.10	-15.80	0.655601659751037	7.5	3-17,437-423	1-2,439-438[UP5];18-21,422-419[UP3]	....(((((((((((((((..&..)))))))))))))))....	UACAAUUAGAGAUUUAGUUAA&GCAACUAAAUCUUUAAUAAUU	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN5575_c0_g1_430_TPlot.pdf
TRINITY_DN5575_c0_g1:69	si_s295	TRINITY_DN5575_c0_g1	57	77	69	-32.20	-21.00	0.652173913043478	7.5	2-5,76-73;7-15,72-64;16-19,62-59	1-1,77-77[UP5];6-6,x-x[BULq];x-x,63-63[BULt];20-21,58-57[UP3]	..((((.(((((((((-((((.&.)))).)))))))))-))))..	UGUUCGCCGAUUCCGA-CGACC&AGUCGAUUGGAAUUG-CGAAAA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN5575_c0_g1_69_TPlot.pdf
TRINITY_DN5576_c0_g1:1004	si_a598	TRINITY_DN5576_c0_g1	992	1012	1004	-32.30	-21.00	0.65015479876161	7.5	1-8,1012-1005;11-17,1003-997;18-21,995-992	9-10,1004-1004[AILq];x-x,996-996[BULt]	((((.(((((((.-((((((((&))))))))..)))))))-))))	UGGGCGUUGUGGU-AUUCUGUC&GACAGAAUUUUCGCAAU-UCCA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN5576_c0_g1_1004_TPlot.pdf
TRINITY_DN5576_c0_g1:11095	si_a636	TRINITY_DN5576_c0_g1	11084	11104	11095	-26.30	-17.20	0.653992395437262	8.5	1-2,11104-11103;4-7,11101-11098;9-18,11096-11087	3-3,11102-11102[SIL];8-8,11097-11097[SIL];19-21,11086-11084[UP3]	...((((((((((.((((.((&)).)))).))))))))))...	UGGUACUCGAAAAUGUCGUCA&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999968221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN5576_c0_g1_11095_TPlot.pdf
TRINITY_DN5576_c0_g1:2800	si_s811	TRINITY_DN5576_c0_g1	2789	2809	2800	-26.40	-19.20	0.727272727272727	12.5	3-16,2807-2794	1-2,2809-2808[UP5];17-21,2793-2789[UP3]	.....((((((((((((((..&..)))))))))))))).....	UCAAAGAGAGAGGGUGGCGCU&UUCGUUACCUUUUCUUAAUAA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN5576_c0_g1_2800_TPlot.pdf
TRINITY_DN5576_c0_g1:2804	si_s807	TRINITY_DN5576_c0_g1	2793	2813	2804	-28.90	-19.20	0.664359861591695	15.5	7-20,2807-2794	1-6,2813-2808[UP5];21-21,2793-2793[UP3]	.((((((((((((((......&......)))))))))))))).	AGAGAGAGGGUGGCGCUCUAC&UAUCUUCGUUACCUUUUCUUA	4	0.999999999903117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5576_c0_g1_2804_TPlot.pdf
TRINITY_DN5576_c0_g1:5831	si_s636	TRINITY_DN5576_c0_g1	5821	5839	5831	-40.80	-26.70	0.654411764705882	10	3-9,5837-5831;12-20,5830-5822	1-2,5839-5838[UP5];10-11,x-x[BULq];21-21,5821-5821[UP3]	.(((((((((--(((((((..&..)))))))..))))))))).	CCGAGGGCAA--GUCUGCGUU&UUCGUAGGCGUUUGCCCUCGA	2	0.990833485012825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN5576_c0_g1_5831_TPlot.pdf
TRINITY_DN5578_c0_g1:3827	si_a370	TRINITY_DN5578_c0_g1	3816	3836	3827	-29.50	-19.80	0.671186440677966	7	1-9,3836-3828;12-17,3825-3820;19-20,3818-3817	10-11,3827-3826[SIL];18-18,3819-3819[SIL];21-21,3816-3816[UP3]	.((.((((((..(((((((((&)))))))))..)))))).)).	GGGCAUCGUUGAUGAUCCGAU&AUCGGAUCAAAAAUGAUUUCG	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN5578_c0_g1_3827_TPlot.pdf
TRINITY_DN5578_c0_g1:4084	si_a250	TRINITY_DN5578_c0_g1	4074	4094	4084	-41.50	-28.40	0.68433734939759	6	1-3,4094-4092;4-13,4090-4081;15-21,4080-4074	x-x,4091-4091[BULt];14-14,x-x[BULq]	(((((((-((((((((((.(((&)))-)))))))))).)))))))	CCUUCGG-ACGAUUGGGGUGAU&AUC-CCCCGAUUGUAUCGAGGG	2	0.336829336879587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a250_TRINITY_DN5578_c0_g1_4084_TPlot.pdf
TRINITY_DN5578_c0_g1:878	si_a329	TRINITY_DN5578_c0_g1	868	888	878	-29.60	-19.30	0.652027027027027	8	1-7,888-882;8-13,880-875;16-20,873-869	x-x,881-881[BULt];14-15,874-874[AILq];21-21,868-868[UP3]	.(((((.-((((((.(((((((&)))))))-))))))..))))).	GGGGACU-GGAGUACAAAGAGU&AUUUUUU-UAUUCCUUGUCCCG	4	0.999999999922797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5578_c0_g1_878_TPlot.pdf
TRINITY_DN5580_c0_g1:3556	si_s97	TRINITY_DN5580_c0_g1	3546	3565	3556	-36.30	-23.80	0.65564738292011	7.5	1-13,3565-3553;15-18,3552-3549	14-14,x-x[BULq];19-21,3548-3546[UP3]	...((((-(((((((((((((&))))))))))))).))))...	UUACGAU-CGAGGCGGGGAAG&CUUCUUCGCUUCGGAUUGGAA	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN5580_c0_g1_3556_TPlot.pdf
TRINITY_DN5580_c0_g1:3558	si_s95	TRINITY_DN5580_c0_g1	3548	3567	3558	-36.30	-25.30	0.696969696969697	6.5	2-15,3566-3553;17-20,3552-3549	1-1,3567-3567[UP5];16-16,x-x[BULq];21-21,3548-3548[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	ACGAU-CGAGGCGGGGAAGAC&UUCUUCUUCGCUUCGGAUUGG	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN5580_c0_g1_3558_TPlot.pdf
TRINITY_DN5580_c0_g1:3562	si_s91	TRINITY_DN5580_c0_g1	3551	3571	3562	-34.70	-22.80	0.657060518731988	13.5	6-19,3566-3553	1-5,3571-3567[UP5];20-21,3552-3551[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUCGAGGCGGGGAAGACCGUG&UUUCUUCUUCUUCGCUUCGGA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5580_c0_g1_3562_TPlot.pdf
TRINITY_DN5580_c0_g1:3576	si_s773	TRINITY_DN5580_c0_g1	3565	3585	3576	-23.10	-15.10	0.653679653679654	15	5-17,3581-3569	1-4,3585-3582[UP5];18-21,3568-3565[UP3]	....(((((((((((((....&....)))))))))))))....	GACCGUGGCAAUGGUGGGCGA&UUAAUUACUAUUGCUAUAAAA	3	0.999999905516913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN5580_c0_g1_3576_TPlot.pdf
TRINITY_DN5580_c0_g1:3579	si_s770	TRINITY_DN5580_c0_g1	3568	3589	3579	-26.60	-20.80	0.781954887218045	11	1-5,3589-3585;8-20,3581-3569	6-7,3584-3582[AILt];21-21,3568-3568[UP3]	.(((((((((((((...(((((&)))))-..))))))))))))).	CGUGGCAAUGGUGGGCGAAUCG&CGAUU-AAUUACUAUUGCUAUA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN5580_c0_g1_3579_TPlot.pdf
TRINITY_DN5580_c0_g1:3592	si_s181	TRINITY_DN5580_c0_g1	3582	3601	3592	-34.60	-23.20	0.670520231213873	10	3-11,3599-3591;14-18,3589-3585	1-2,3601-3600[UP5];12-13,3590-3590[AILq];19-21,3584-3582[UP3]	...(((((.-(((((((((..&..)))))))))..)))))...	GCGAAUCGG-GCUCGGGCAAG&GAUGCCCGAGUAACGAUUAUU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN5580_c0_g1_3592_TPlot.pdf
TRINITY_DN5580_c0_g1:3600	si_a634	TRINITY_DN5580_c0_g1	3589	3609	3600	-26.40	-17.80	0.674242424242424	12	4-11,3606-3599;13-19,3597-3591	1-3,3609-3607[UP5];12-12,3598-3598[SIL];20-21,3590-3589[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	GGGCUCGGGCAAGUCGACGAU&UAUGUCGAUUUUUUUGAGUAA	3	0.999999846412027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN5580_c0_g1_3600_TPlot.pdf
TRINITY_DN5580_c0_g1:3601	si_a633	TRINITY_DN5580_c0_g1	3590	3610	3601	-26.40	-17.80	0.674242424242424	12	5-12,3606-3599;14-20,3597-3591	1-4,3610-3607[UP5];13-13,3598-3598[SIL];21-21,3590-3590[UP3]	.(((((((.((((((((....&....)))))))).))))))).	GGCUCGGGCAAGUCGACGAUU&UUAUGUCGAUUUUUUUGAGUA	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5580_c0_g1_3601_TPlot.pdf
TRINITY_DN5580_c0_g1:3897	si_a794	TRINITY_DN5580_c0_g1	3885	3906	3897	-28.60	-19.02	0.665034965034965	11	4-13,3903-3894;17-21,3889-3885	1-3,3906-3904[UP5];14-16,3893-3890[AILt]	(((((....((((((((((...&...))))))))))-...)))))	UUCGGUACGGGAAGAUGGACGC&UUUUCUAUUUUCC-AAUCCGAA	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN5580_c0_g1_3897_TPlot.pdf
TRINITY_DN5580_c0_g1:3903	si_a497	TRINITY_DN5580_c0_g1	3892	3911	3903	-32.00	-21.80	0.68125	11	3-7,3909-3905;10-20,3903-3893	1-2,3911-3910[UP5];8-9,3904-3904[AILq];21-21,3892-3892[UP3]	.(((((((((((.-(((((..&..)))))..))))))))))).	CGGGAAGAUGGAC-GCGACUC&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999990364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5580_c0_g1_3903_TPlot.pdf
TRINITY_DN5580_c0_g1:3904	si_a496	TRINITY_DN5580_c0_g1	3893	3912	3904	-32.40	-21.80	0.67283950617284	12	4-8,3909-3905;11-21,3903-3893	1-3,3912-3910[UP5];9-10,3904-3904[AILq]	(((((((((((.-(((((...&...)))))..)))))))))))	GGGAAGAUGGAC-GCGACUCU&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999350511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5580_c0_g1_3904_TPlot.pdf
TRINITY_DN5580_c0_g1:4649	si_s91	TRINITY_DN5580_c0_g1	4638	4658	4649	-34.70	-22.78	0.656484149855908	6.5	1-15,4658-4644;19-20,4640-4639	16-18,4643-4641[SIL];21-21,4638-4638[UP3]	.((...(((((((((((((((&)))))))))))))))...)).	ACCUCUGUGGAGAAGAAGAGA&UUUCUUCUUCUUCGCUUCGGA	2	0.999999999931127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5580_c0_g1_4649_TPlot.pdf
TRINITY_DN5580_c0_g1:4650	si_s90	TRINITY_DN5580_c0_g1	4639	4659	4650	-35.30	-25.68	0.727478753541076	5	1-16,4659-4644;20-21,4640-4639	17-19,4643-4641[SIL]	((...((((((((((((((((&))))))))))))))))...))	CCUCUGUGGAGAAGAAGAGAG&CUUUCUUCUUCUUCGCUUCGG	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5580_c0_g1_4650_TPlot.pdf
TRINITY_DN5580_c0_g1:4651	si_s89	TRINITY_DN5580_c0_g1	4640	4660	4651	-35.30	-24.60	0.696883852691218	7	2-17,4659-4644	1-1,4660-4660[UP5];18-21,4643-4640[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUCUGUGGAGAAGAAGAGAGA&CCUUUCUUCUUCUUCGCUUCG	2	0.999957093544132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5580_c0_g1_4651_TPlot.pdf
TRINITY_DN5580_c0_g1:4652	si_s88	TRINITY_DN5580_c0_g1	4641	4662	4652	-34.80	-25.10	0.721264367816092	7	1-2,4662-4661;3-18,4659-4644	x-x,4660-4660[BULt];19-21,4643-4641[UP3]	...((((((((((((((((.((&))-))))))))))))))))...	UCUGUGGAGAAGAAGAGAGAGA&UC-CUUUCUUCUUCUUCGCUUC	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5580_c0_g1_4652_TPlot.pdf
TRINITY_DN5580_c0_g1:4653	si_s87	TRINITY_DN5580_c0_g1	4642	4663	4653	-32.90	-25.30	0.768996960486322	7	2-3,4662-4661;4-19,4659-4644	1-1,4663-4663[UP5];x-x,4660-4660[BULt];20-21,4643-4642[UP3]	..((((((((((((((((.((.&.))-))))))))))))))))..	CUGUGGAGAAGAAGAGAGAGAU&UUC-CUUUCUUCUUCUUCGCUU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5580_c0_g1_4653_TPlot.pdf
TRINITY_DN5580_c0_g1:4654	si_s86	TRINITY_DN5580_c0_g1	4643	4664	4654	-32.90	-25.30	0.768996960486322	8	3-4,4662-4661;5-20,4659-4644	1-2,4664-4663[UP5];x-x,4660-4660[BULt];21-21,4643-4643[UP3]	.((((((((((((((((.((..&..))-)))))))))))))))).	UGUGGAGAAGAAGAGAGAGAUU&UUUC-CUUUCUUCUUCUUCGCU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5580_c0_g1_4654_TPlot.pdf
TRINITY_DN5580_c0_g1:4655	si_s85	TRINITY_DN5580_c0_g1	4644	4665	4655	-33.80	-24.90	0.736686390532544	9	4-5,4662-4661;6-21,4659-4644	1-3,4665-4663[UP5];x-x,4660-4660[BULt]	((((((((((((((((.((...&...))-))))))))))))))))	GUGGAGAAGAAGAGAGAGAUUU&CUUUC-CUUUCUUCUUCUUCGC	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5580_c0_g1_4655_TPlot.pdf
TRINITY_DN5580_c0_g1:4656	si_s81	TRINITY_DN5580_c0_g1	4645	4665	4656	-28.90	-19.20	0.664359861591695	10.5	4-9,4662-4657;11-20,4655-4646	1-3,4665-4663[UP5];10-10,4656-4656[SIL];21-21,4645-4645[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	UGGAGAAGAAGAGAGAGAUUU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN5580_c0_g1_4656_TPlot.pdf
TRINITY_DN5580_c0_g1:4657	si_s80	TRINITY_DN5580_c0_g1	4646	4666	4657	-28.20	-18.80	0.666666666666667	11.5	5-10,4662-4657;12-21,4655-4646	1-4,4666-4663[UP5];11-11,4656-4656[SIL]	((((((((((.((((((....&....)))))).))))))))))	GGAGAAGAAGAGAGAGAUUUU&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5580_c0_g1_4657_TPlot.pdf
TRINITY_DN5580_c0_g1:4688	si_s79	TRINITY_DN5580_c0_g1	4677	4697	4688	-26.20	-18.10	0.690839694656489	14	6-18,4692-4680	1-5,4697-4693[UP5];19-21,4679-4677[UP3]	...(((((((((((((.....&.....)))))))))))))...	CGUGAGAGAGGAGAGAUUUUC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5580_c0_g1_4688_TPlot.pdf
TRINITY_DN5580_c0_g1:4689	si_s78	TRINITY_DN5580_c0_g1	4678	4698	4689	-26.20	-18.10	0.690839694656489	15	7-19,4692-4680	1-6,4698-4693[UP5];20-21,4679-4678[UP3]	..(((((((((((((......&......)))))))))))))..	GUGAGAGAGGAGAGAUUUUCU&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5580_c0_g1_4689_TPlot.pdf
TRINITY_DN5580_c0_g1:4690	si_s77	TRINITY_DN5580_c0_g1	4679	4699	4690	-25.50	-18.10	0.709803921568627	16	8-20,4692-4680	1-7,4699-4693[UP5];21-21,4679-4679[UP3]	.(((((((((((((.......&.......))))))))))))).	UGAGAGAGGAGAGAUUUUCUU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5580_c0_g1_4690_TPlot.pdf
TRINITY_DN5580_c0_g1:4691	si_s76	TRINITY_DN5580_c0_g1	4680	4700	4691	-23.60	-18.10	0.766949152542373	17	9-21,4692-4680	1-8,4700-4693[UP5]	(((((((((((((........&........)))))))))))))	GAGAGAGGAGAGAUUUUCUUG&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999998563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5580_c0_g1_4691_TPlot.pdf
TRINITY_DN5580_c0_g1:4692	si_s75	TRINITY_DN5580_c0_g1	4681	4701	4692	-24.00	-17.00	0.708333333333333	18	10-21,4692-4681	1-9,4701-4693[UP5]	((((((((((((.........&.........))))))))))))	AGAGAGGAGAGAUUUUCUUGC&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999999948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5580_c0_g1_4692_TPlot.pdf
TRINITY_DN5580_c0_g1:4696	si_s29	TRINITY_DN5580_c0_g1	4685	4705	4696	-26.40	-17.20	0.651515151515151	9.5	1-8,4705-4698;11-18,4695-4688	9-10,4697-4696[SIL];19-21,4687-4685[UP3]	...((((((((..((((((((&))))))))..))))))))...	AGGAGAGAUUUUCUUGCGGUC&GAUUGCAACUAAAUCUUUAAU	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN5580_c0_g1_4696_TPlot.pdf
TRINITY_DN5580_c0_g1:4720	si_s79	TRINITY_DN5580_c0_g1	4710	4729	4720	-26.20	-18.00	0.687022900763359	11.5	6-17,4724-4713;19-21,4712-4710	1-5,4729-4725[UP5];18-18,x-x[BULq]	(((-((((((((((((.....&.....)))))))))))).)))	AAG-AGAAGGGAGAGAUUCUA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5580_c0_g1_4720_TPlot.pdf
TRINITY_DN5580_c0_g1:4721	si_s78	TRINITY_DN5580_c0_g1	4710	4730	4721	-26.20	-17.90	0.683206106870229	15	7-19,4724-4712	1-6,4730-4725[UP5];20-21,4711-4710[UP3]	..(((((((((((((......&......)))))))))))))..	AAGAGAAGGGAGAGAUUCUAU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5580_c0_g1_4721_TPlot.pdf
TRINITY_DN5580_c0_g1:4722	si_a185	TRINITY_DN5580_c0_g1	4711	4731	4722	-31.70	-21.50	0.678233438485804	7.5	1-4,4731-4728;7-16,4725-4716;18-20,4714-4712	5-6,4727-4726[SIL];17-17,4715-4715[SIL];21-21,4711-4711[UP3]	.(((.((((((((((..((((&))))..)))))))))).))).	AGAGAAGGGAGAGAUUCUAUC&GAUAAUAUCUUUCCCUGUUCA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN5580_c0_g1_4722_TPlot.pdf
TRINITY_DN5580_c0_g1:4723	si_a184	TRINITY_DN5580_c0_g1	4712	4732	4723	-31.70	-21.00	0.662460567823344	7.5	2-5,4731-4728;8-17,4725-4716;19-21,4714-4712	1-1,4732-4732[UP5];6-7,4727-4726[SIL];18-18,4715-4715[SIL]	(((.((((((((((..((((.&.))))..)))))))))).)))	GAGAAGGGAGAGAUUCUAUCG&AGAUAAUAUCUUUCCCUGUUC	2	0.911698574034005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN5580_c0_g1_4723_TPlot.pdf
TRINITY_DN5580_c0_g1:4724	si_s75	TRINITY_DN5580_c0_g1	4713	4733	4724	-24.00	-16.60	0.691666666666667	18	10-21,4724-4713	1-9,4733-4725[UP5]	((((((((((((.........&.........))))))))))))	AGAAGGGAGAGAUUCUAUCGU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5580_c0_g1_4724_TPlot.pdf
TRINITY_DN5580_c0_g1:4773	si_a570	TRINITY_DN5580_c0_g1	4762	4784	4773	-31.90	-21.70	0.68025078369906	11.5	1-6,4784-4779;8-19,4775-4764	7-7,4778-4776[AILt];20-21,4763-4762[UP3]	..((((((((((((...((((((&))))))--.))))))))))))..	GAGCAGGCAUACGGAGCUCAUGG&CCGUGA--AUCGUAUGUUUGUAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN5580_c0_g1_4773_TPlot.pdf
TRINITY_DN5582_c0_g1:1553	si_a757	TRINITY_DN5582_c0_g1	1542	1562	1553	-33.10	-21.60	0.652567975830816	10	3-10,1560-1553;12-19,1551-1544	1-2,1562-1561[UP5];11-11,1552-1552[SIL];20-21,1543-1542[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	GCUCAAAAAUGCAGAGGGGAA&ACCUCCUUUGGGUUUUUGAUU	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5582_c0_g1_1553_TPlot.pdf
TRINITY_DN5583_c0_g1:5882	si_a148	TRINITY_DN5583_c0_g1	5871	5890	5882	-30.30	-21.00	0.693069306930693	9.5	2-5,5889-5886;9-21,5883-5871	1-1,5890-5890[UP5];6-8,5885-5884[AILq]	(((((((((((((..-((((.&.))))...)))))))))))))	UUGACCUUGAGACUA-GACGU&UCGUUGUUGUUUUAAGGUCAA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN5583_c0_g1_5882_TPlot.pdf
TRINITY_DN5583_c0_g1:6218	si_a457	TRINITY_DN5583_c0_g1	6207	6226	6218	-23.50	-15.50	0.659574468085106	7.5	2-7,6225-6220;9-15,6219-6213;17-21,6211-6207	1-1,6226-6226[UP5];8-8,x-x[BULq];16-16,6212-6212[SIL]	(((((.(((((((-((((((.&.)))))).))))))).)))))	GCAUAAUAUGUGU-ACAGCAU&UUGUUGUUAUAUAUAAUAUGU	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN5583_c0_g1_6218_TPlot.pdf
TRINITY_DN5583_c1_g2:311	si_a756	TRINITY_DN5583_c1_g2	299	320	311	-33.10	-22.02	0.665256797583082	11	3-12,318-309;16-21,304-299	1-2,320-319[UP5];13-15,308-305[AILt]	((((((....((((((((((..&..))))))))))-...))))))	GUCAGACUAACCGAGGGAGGAA&AACCUCCUUUGG-GUUUUUGAU	3	0.999999968968324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN5583_c1_g2_311_TPlot.pdf
TRINITY_DN55849_c0_g1:156	si_s543	TRINITY_DN55849_c0_g1	145	165	156	-28.80	-19.20	0.666666666666667	10.5	1-1,165-165;4-16,162-150	2-3,164-163[SIL];17-21,149-145[UP3]	.....(((((((((((((..(&)..))))))))))))).....	GAGCACUGUUUUGGUCGGUGC&GAUCCGAUCAAAAUAGAAUUA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN55849_c0_g1_156_TPlot.pdf
TRINITY_DN5584_c0_g1:2591	si_a151	TRINITY_DN5584_c0_g1	2581	2601	2591	-28.90	-18.80	0.650519031141869	8	2-8,2600-2594;10-17,2591-2584;19-21,2583-2581	1-1,2601-2601[UP5];9-9,2593-2592[AILt];18-18,x-x[BULq]	(((-((((((((..(((((((.&.)))))))-.)))))))).)))	AGA-UGACCUUAUCAACGACGC&UUGUUGUU-UUAAGGUCAAUCU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN5584_c0_g1_2591_TPlot.pdf
TRINITY_DN5584_c0_g1:2884	si_s252	TRINITY_DN5584_c0_g1	2870	2893	2884	-31.10	-21.10	0.678456591639871	10.5	1-11,2893-2883;12-19,2879-2872	x-x,2882-2880[BULt];20-21,2871-2870[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	UCGGUGAUGUUAAAUUGGGAAAUG&CAUUUCCCGAU---AUAUUACUCA	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN5584_c0_g1_2884_TPlot.pdf
TRINITY_DN5584_c0_g1:5529	si_s90	TRINITY_DN5584_c0_g1	5517	5540	5529	-35.30	-23.30	0.660056657223796	8	1-8,5540-5533;9-12,5530-5527;13-21,5525-5517	x-x,5532-5531[BULt];x-x,5526-5526[BULt]	(((((((((.((((..((((((((&))))))))--))))-)))))))))	CUGAAGUGAUGGAAAUGAAGAAAG&CUUUCUUC--UUCU-UCGCUUCGG	2	0.999999999621058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5584_c0_g1_5529_TPlot.pdf
TRINITY_DN5586_c0_g2:3513	si_a703	TRINITY_DN5586_c0_g2	3502	3521	3513	-29.20	-21.60	0.73972602739726	7	3-7,3519-3515;9-19,3514-3504	1-2,3521-3520[UP5];8-8,x-x[BULq];20-21,3503-3502[UP3]	..(((((((((((-(((((..&..))))).)))))))))))..	CGAUUUUGGAAUG-ACCAGAG&AACUGGUACAUUCCAAAAUAA	1	0.00687534025775727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN5586_c0_g2_3513_TPlot.pdf
TRINITY_DN55877_c0_g1:171	si_a23	TRINITY_DN55877_c0_g1	160	182	171	-22.80	-16.86	0.739473684210526	13.5	1-7,182-176;11-21,170-160	8-10,175-171[AILt]	(((((((((((.....(((((((&)))))))--...)))))))))))	UCUUAGAGCUGUCGGUGUAGAUA&UAUUUAU--UUUUAGUUCUAAGA	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN55877_c0_g1_171_TPlot.pdf
TRINITY_DN55877_c0_g1:212	si_a423	TRINITY_DN55877_c0_g1	201	221	212	-27.10	-17.70	0.653136531365314	6.5	2-10,220-212;12-19,210-203	1-1,221-221[UP5];11-11,211-211[SIL];20-21,202-201[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UCCGGAUCUUCUAUUUGUUUC&UAAAUAAAUAUAGGAUCCGUU	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a423_TRINITY_DN55877_c0_g1_212_TPlot.pdf
TRINITY_DN55877_c0_g1:214	si_a421	TRINITY_DN55877_c0_g1	203	223	214	-26.40	-17.40	0.659090909090909	7.5	4-12,220-212;14-21,210-203	1-3,223-221[UP5];13-13,211-211[SIL]	((((((((.(((((((((...&...))))))))).))))))))	CGGAUCUUCUAUUUGUUUCGU&UUUAAAUAAAUAUAGGAUCCG	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a421_TRINITY_DN55877_c0_g1_214_TPlot.pdf
TRINITY_DN5587_c0_g1:402	si_a68	TRINITY_DN5587_c0_g1	391	411	402	-25.40	-18.90	0.744094488188976	6.5	1-8,411-404;10-11,402-401;13-20,399-392	9-9,403-403[SIL];12-12,400-400[SIL];21-21,391-391[UP3]	.((((((((.((.((((((((&)))))))).)).)))))))).	AGAAGAACAUUUAGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN5587_c0_g1_402_TPlot.pdf
TRINITY_DN5588_c0_g1:799	si_a452	TRINITY_DN5588_c0_g1	787	808	799	-23.00	-15.00	0.652173913043478	5	2-13,807-796;15-19,793-789	1-1,808-808[UP5];14-14,795-794[AILt];20-21,788-787[UP3]	..(((((..((((((((((((.&.))))))))))))-.)))))..	CGAUAUAAGAACAACAAUUAUA&GAUAAUUGUUGUU-AUAUAUAA	4	0.999999702436257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN5588_c0_g1_799_TPlot.pdf
TRINITY_DN5588_c0_g1:807	si_a446	TRINITY_DN5588_c0_g1	794	816	807	-25.50	-16.80	0.658823529411765	8	2-10,815-807;11-19,804-796	1-1,816-816[UP5];x-x,806-805[BULt];20-21,795-794[UP3]	..(((((((((..(((((((((.&.)))))))))--)))))))))..	AGAACAACAAUUAUAUCUUAUAC&AUAUGAGAUA--AUUGUUGUUAU	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN5588_c0_g1_807_TPlot.pdf
TRINITY_DN558_c0_g1:2267	si_a398	TRINITY_DN558_c0_g1	2256	2275	2267	-22.40	-14.60	0.651785714285714	9	4-8,2272-2268;10-20,2267-2257	1-3,2275-2273[UP5];9-9,x-x[BULq];21-21,2256-2256[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	AAAACAAAACAA-UCUGUUCG&AAUAUAGAAUUGUUUUGUUUA	3	0.999999999991466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN558_c0_g1_2267_TPlot.pdf
TRINITY_DN55901_c0_g1:1002	si_s76	TRINITY_DN55901_c0_g1	992	1011	1002	-23.60	-16.60	0.703389830508475	8.5	4-17,1008-995;19-21,994-992	1-3,1011-1009[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	AAG-GAGGAAAGAAAGGACAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN55901_c0_g1_1002_TPlot.pdf
TRINITY_DN55901_c0_g1:1377	si_a410	TRINITY_DN55901_c0_g1	1366	1386	1377	-17.80	-12.00	0.674157303370786	10.5	3-16,1384-1371	1-2,1386-1385[UP5];17-21,1370-1366[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACAGAUUGAAUAUAAGCGACA&UUUUGUUUAUAUUUAAAUAAA	3	0.99999999999714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN55901_c0_g1_1377_TPlot.pdf
TRINITY_DN55901_c0_g1:1541	si_a455	TRINITY_DN55901_c0_g1	1530	1550	1541	-21.10	-14.00	0.663507109004739	6.5	3-14,1548-1537;16-19,1535-1532	1-2,1550-1549[UP5];15-15,1536-1536[SIL];20-21,1531-1530[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	AGAUUGAAUAUAACAACAAAC&AAUUGUUGUUAUAUAUAAUAU	2	0.999984537185195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN55901_c0_g1_1541_TPlot.pdf
TRINITY_DN55901_c0_g1:1542	si_a454	TRINITY_DN55901_c0_g1	1531	1551	1542	-21.30	-14.00	0.657276995305164	7.5	4-15,1548-1537;17-20,1535-1532	1-3,1551-1549[UP5];16-16,1536-1536[SIL];21-21,1531-1531[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	GAUUGAAUAUAACAACAAACU&UAAUUGUUGUUAUAUAUAAUA	2	0.999961159904183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN55901_c0_g1_1542_TPlot.pdf
TRINITY_DN55901_c0_g1:816	si_s82	TRINITY_DN55901_c0_g1	804	825	816	-28.90	-20.80	0.719723183391003	7	1-13,825-813;14-18,811-807	x-x,812-812[BULt];19-21,806-804[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	UGCGGGAACGAGAGGAAAGAGA&UUUCUUUCCUUUC-UUCUUCUU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN55901_c0_g1_816_TPlot.pdf
TRINITY_DN5590_c1_g1:592	si_s80	TRINITY_DN5590_c1_g1	581	601	592	-28.20	-19.50	0.691489361702128	8.5	2-17,600-585	1-1,601-601[UP5];18-21,584-581[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGCAGAGGGAGGAAAGAGGAC&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5590_c1_g1_592_TPlot.pdf
TRINITY_DN5590_c1_g1:594	si_s78	TRINITY_DN5590_c1_g1	583	603	594	-26.20	-19.50	0.744274809160305	10.5	4-19,600-585	1-3,603-601[UP5];20-21,584-583[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAGAGGGAGGAAAGAGGACAU&UUUUUUUCUUUCCUUUCUUCU	2	0.999999942148895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5590_c1_g1_594_TPlot.pdf
TRINITY_DN55910_c0_g1:252	si_s274	TRINITY_DN55910_c0_g1	231	261	252	-30.20	-19.70	0.652317880794702	25	3-12,259-250;13-21,239-231	1-2,261-260[UP5];x-x,249-240[BULt]	(((((((((..........((((((((((..&..))))))))))----------)))))))))	GGGCGUGUUGGUGCCCAUGAUGUUGAUUUGC&AAAAAUCGACAU----------AAUACGCCU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s274_TRINITY_DN55910_c0_g1_252_TPlot.pdf
TRINITY_DN5591_c0_g2:69	si_s870	TRINITY_DN5591_c0_g2	58	78	69	-32.70	-22.60	0.691131498470948	11	4-9,75-70;11-19,68-60	1-3,78-76[UP5];10-10,69-69[SIL];20-21,59-58[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	UAUUAGUUCUGUGGCCGGGAC&CUACCGGUCUUAGAACUAAAA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s870_TRINITY_DN5591_c0_g2_69_TPlot.pdf
TRINITY_DN5591_c0_g4:132	si_a408	TRINITY_DN5591_c0_g4	121	141	132	-20.10	-13.10	0.651741293532338	9.5	1-11,141-131;13-17,129-125	12-12,130-130[SIL];18-21,124-121[UP3]	....(((((.(((((((((((&))))))))))).)))))....	GUGCUAAGUUUAAACGAGGCA&UGUUUUGUUUAUAUUUAAAUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN5591_c0_g4_132_TPlot.pdf
TRINITY_DN5591_c0_g4:366	si_a143	TRINITY_DN5591_c0_g4	355	376	366	-25.10	-18.40	0.733067729083665	6	1-6,376-371;7-18,369-358	x-x,370-370[BULt];19-21,357-355[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	CCAAAAACAACAACGAAUUGAU&AUUAAU-CGUUGUUGUUUUAAG	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN5591_c0_g4_366_TPlot.pdf
TRINITY_DN5591_c1_g1:547	si_a313	TRINITY_DN5591_c1_g1	536	557	547	-28.70	-18.90	0.658536585365854	9.5	1-7,557-551;8-15,549-542	x-x,550-550[BULt];16-21,541-536[UP3]	......((((((((.(((((((&)))))))-))))))))......	UCGGAGGUGGAUGAUAUCCAAG&CUUGGAU-UUAUCCAUGAUUUU	4	0.999993418734587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN5591_c1_g1_547_TPlot.pdf
TRINITY_DN5591_c1_g1:649	si_a478	TRINITY_DN5591_c1_g1	638	658	649	-21.30	-14.20	0.666666666666667	15.5	7-19,652-640	1-6,658-653[UP5];20-21,639-638[UP3]	..(((((((((((((......&......)))))))))))))..	GGAUUCUGUAUGGCAUUUUGG&AAUUAUUGUUAUAUAGAAUAU	4	0.999987259542911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN5591_c1_g1_649_TPlot.pdf
TRINITY_DN55921_c0_g1:720	si_a324	TRINITY_DN55921_c0_g1	709	728	720	-27.50	-18.50	0.672727272727273	7.5	1-2,728-727;4-8,726-722;11-20,719-710	3-3,x-x[BULq];9-10,721-720[SIL];21-21,709-709[UP3]	.((((((((((..(((((-((&)).)))))..)))))))))).	AGAGGAAUAAAUUAAUCA-GG&CCAUGAUUUUUUUAUUCCUUG	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN55921_c0_g1_720_TPlot.pdf
TRINITY_DN5592_c0_g1:381	si_a582	TRINITY_DN5592_c0_g1	370	390	381	-32.80	-24.30	0.740853658536585	7	3-13,388-378;16-21,375-370	1-2,390-389[UP5];14-15,377-376[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	CUGUCCAGCUUGUUGCAAGAU&UGUUUGUAACAAGAAGGACAG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN5592_c0_g1_381_TPlot.pdf
TRINITY_DN5592_c0_g1:720	si_s899	TRINITY_DN5592_c0_g1	705	729	720	-28.30	-18.88	0.667137809187279	13.5	1-11,729-719;13-20,713-706	12-12,718-714[AILt];21-21,705-705[UP3]	.((((((((.....(((((((((((&)))))))))))----.)))))))).	UGUUGAGAUAUUUAGGAGAGAAAGU&GCUUUCUCUUC----AAUUUCAAUU	3	0.9999999945586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN5592_c0_g1_720_TPlot.pdf
TRINITY_DN5592_c0_g1:729	si_s71	TRINITY_DN5592_c0_g1	718	737	729	-25.70	-17.60	0.684824902723736	11.5	1-5,737-733;11-21,728-718	6-10,732-729[AILq]	(((((((((((....-(((((&))))).....)))))))))))	AGGAGAGAAAGUUUC-AGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999999892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5592_c0_g1_729_TPlot.pdf
TRINITY_DN5592_c0_g1:811	si_a195	TRINITY_DN5592_c0_g1	800	820	811	-31.40	-21.10	0.671974522292994	10.5	2-14,819-807	1-1,820-820[UP5];15-21,806-800[UP3]	.......(((((((((((((.&.))))))))))))).......	CAACACAUGGUGGACAGGGGC&UUCCCUGUUCACUAAUAAAUC	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a195_TRINITY_DN5592_c0_g1_811_TPlot.pdf
TRINITY_DN5592_c0_g1:813	si_a193	TRINITY_DN5592_c0_g1	802	822	813	-30.90	-21.10	0.68284789644013	12.5	4-16,819-807	1-3,822-820[UP5];17-21,806-802[UP3]	.....(((((((((((((...&...))))))))))))).....	ACACAUGGUGGACAGGGGCCA&CUUUCCCUGUUCACUAAUAAA	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN5592_c0_g1_813_TPlot.pdf
TRINITY_DN5592_c0_g1:817	si_a189	TRINITY_DN5592_c0_g1	806	826	817	-32.10	-21.10	0.657320872274143	16	8-20,819-807	1-7,826-820[UP5];21-21,806-806[UP3]	.(((((((((((((.......&.......))))))))))))).	AUGGUGGACAGGGGCCAUUGC&AUAUCUUUCCCUGUUCACUAA	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN5592_c0_g1_817_TPlot.pdf
TRINITY_DN5592_c0_g1:818	si_a188	TRINITY_DN5592_c0_g1	807	827	818	-32.00	-20.90	0.653125	17	9-21,819-807	1-8,827-820[UP5]	(((((((((((((........&........)))))))))))))	UGGUGGACAGGGGCCAUUGCA&AAUAUCUUUCCCUGUUCACUA	3	0.999935980429087	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN5592_c0_g1_818_TPlot.pdf
TRINITY_DN5592_c0_g1:907	si_a403	TRINITY_DN5592_c0_g1	895	916	907	-22.00	-14.80	0.672727272727273	8.5	4-16,913-901;17-21,899-895	1-3,916-914[UP5];x-x,900-900[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	AGAUGCUGAACAAGACAAUGUU&AGAAUUGUUUUGUUUA-UAUUU	4	0.999999999997491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5592_c0_g1_907_TPlot.pdf
TRINITY_DN55935_c0_g1:24	si_s75	TRINITY_DN55935_c0_g1	13	33	24	-24.00	-16.90	0.704166666666667	8.5	1-4,33-30;6-19,28-15	5-5,29-29[SIL];20-21,14-13[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAAGAGGAAAGAAGAGCGGUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN55935_c0_g1_24_TPlot.pdf
TRINITY_DN5593_c0_g1:1550	si_s10	TRINITY_DN5593_c0_g1	1539	1561	1550	-23.80	-17.00	0.714285714285714	11.5	3-7,1559-1555;8-20,1552-1540	1-2,1561-1560[UP5];x-x,1554-1553[BULt];21-21,1539-1539[UP3]	.(((((((((((((..(((((..&..)))))--))))))))))))).	ACAGUGUGGUGAUAAAGUAAGGU&UACUUAU--UAUUACUAUAUUGA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN5593_c0_g1_1550_TPlot.pdf
TRINITY_DN55949_c0_g1:405	si_s97	TRINITY_DN55949_c0_g1	394	414	405	-36.30	-25.10	0.691460055096419	7.5	3-14,412-401;16-20,399-395	1-2,414-413[UP5];15-15,400-400[SIL];21-21,394-394[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	GUCCAACUCGGAGCGGAGACU&CUUCUUCGCUUCGGAUUGGAA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN55949_c0_g1_405_TPlot.pdf
TRINITY_DN55949_c0_g1:406	si_s96	TRINITY_DN55949_c0_g1	395	415	406	-37.20	-24.90	0.669354838709677	8.5	4-15,412-401;17-21,399-395	1-3,415-413[UP5];16-16,400-400[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UCCAACUCGGAGCGGAGACUG&UCUUCUUCGCUUCGGAUUGGA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN55949_c0_g1_406_TPlot.pdf
TRINITY_DN55949_c0_g1:432	si_a758	TRINITY_DN55949_c0_g1	421	441	432	-34.00	-22.10	0.65	10.5	1-10,441-432;12-16,430-426	11-11,431-431[SIL];17-21,425-421[UP3]	.....(((((.((((((((((&)))))))))).))))).....	UUCCAAAGAGGCCGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	4	0.999999999117959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN55949_c0_g1_432_TPlot.pdf
TRINITY_DN55949_c0_g1:433	si_a757	TRINITY_DN55949_c0_g1	422	442	433	-33.10	-22.10	0.667673716012085	10	2-11,441-432;13-17,430-426	1-1,442-442[UP5];12-12,431-431[SIL];18-21,425-422[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	UCCAAAGAGGCCGGAGGAGGA&ACCUCCUUUGGGUUUUUGAUU	2	0.999978090282408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN55949_c0_g1_433_TPlot.pdf
TRINITY_DN55949_c0_g1:434	si_a756	TRINITY_DN55949_c0_g1	423	443	434	-33.10	-22.10	0.667673716012085	10	3-12,441-432;14-18,430-426	1-2,443-442[UP5];13-13,431-431[SIL];19-21,425-423[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	CCAAAGAGGCCGGAGGAGGAG&AACCUCCUUUGGGUUUUUGAU	3	0.999999956221005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN55949_c0_g1_434_TPlot.pdf
TRINITY_DN55949_c0_g1:437	si_a753	TRINITY_DN55949_c0_g1	426	446	437	-33.10	-21.70	0.655589123867069	12.5	6-15,441-432;17-21,430-426	1-5,446-442[UP5];16-16,431-431[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	AAGAGGCCGGAGGAGGAGGCA&AUGAACCUCCUUUGGGUUUUU	4	0.99999973161657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN55949_c0_g1_437_TPlot.pdf
TRINITY_DN55949_c0_g1:491	si_a8	TRINITY_DN55949_c0_g1	480	500	491	-29.50	-19.70	0.667796610169492	10	2-10,499-491;13-16,488-485	1-1,500-500[UP5];11-12,490-489[SIL];17-21,484-480[UP3]	.....((((..(((((((((.&.)))))))))..)))).....	CACGAAGGCGCUCUCUUCAAC&AUUGAAGAGAAAGCCUAUUUA	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN55949_c0_g1_491_TPlot.pdf
TRINITY_DN5594_c0_g1:71	si_s74	TRINITY_DN5594_c0_g1	61	80	71	-25.00	-16.70	0.668	4.5	2-16,79-65;18-21,64-61	1-1,80-80[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	GGAA-GAAAGAAGAAAAGUAU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5594_c0_g1_71_TPlot.pdf
TRINITY_DN5594_c0_g1:72	si_s73	TRINITY_DN5594_c0_g1	58	81	72	-24.00	-16.00	0.666666666666667	8	3-15,79-67;16-21,63-58	1-2,81-80[UP5];x-x,66-64[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	AAAGGAAGAAAGAAGAAAAGUAUA&UCUAUUUUUUUUCUU---UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5594_c0_g1_72_TPlot.pdf
TRINITY_DN55950_c0_g1:253	si_s71	TRINITY_DN55950_c0_g1	242	263	253	-25.70	-17.10	0.665369649805448	9.5	1-5,263-259;7-8,256-255;11-21,252-242	6-6,258-257[AILt];9-10,254-253[SIL]	(((((((((((..((..(((((&)))))-.))..)))))))))))	AGGAAGGAAAAUUAACAAGGAG&CUUCU-AUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN55950_c0_g1_253_TPlot.pdf
TRINITY_DN55950_c0_g1:303	si_a702	TRINITY_DN55950_c0_g1	292	312	303	-30.80	-20.90	0.678571428571428	8.5	1-15,312-298	16-21,297-292[UP3]	......(((((((((((((((&)))))))))))))))......	AGAUAAGGGAUGUAUUAGUUG&CAACUGGUACAUUCCAAAAUA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN55950_c0_g1_303_TPlot.pdf
TRINITY_DN55950_c0_g1:305	si_a700	TRINITY_DN55950_c0_g1	294	314	305	-32.80	-21.50	0.655487804878049	9.5	3-17,312-298	1-2,314-313[UP5];18-21,297-294[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUAAGGGAUGUAUUAGUUGCA&CACAACUGGUACAUUCCAAAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN55950_c0_g1_305_TPlot.pdf
TRINITY_DN55950_c0_g1:558	si_s75	TRINITY_DN55950_c0_g1	547	567	558	-24.00	-16.30	0.679166666666667	9.5	3-19,565-549	1-2,567-566[UP5];20-21,548-547[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CUAAGGGAAAGGGAAAAGGCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN55950_c0_g1_558_TPlot.pdf
TRINITY_DN55950_c0_g1:559	si_s74	TRINITY_DN55950_c0_g1	548	568	559	-25.00	-16.30	0.652	10.5	4-20,565-549	1-3,568-566[UP5];21-21,548-548[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAGGGAAAGGGAAAAGGCAA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN55950_c0_g1_559_TPlot.pdf
TRINITY_DN55950_c0_g1:562	si_s71	TRINITY_DN55950_c0_g1	551	574	562	-25.70	-18.14	0.705836575875486	12.5	1-5,574-570;7-21,565-551	6-6,569-566[AILt]	(((((((((((((((....(((((&)))))---.)))))))))))))))	GGGAAAGGGAAAAGGCAAAGGAAG&CUUCU---AUUUUUUUUCUUUCCU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN55950_c0_g1_562_TPlot.pdf
TRINITY_DN55950_c0_g1:592	si_a350	TRINITY_DN55950_c0_g1	581	601	592	-20.30	-14.20	0.699507389162561	5	1-10,601-592;12-19,590-583	11-11,591-591[SIL];20-21,582-581[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AAAAAAUAGAUUUAAUGUUUU&AAAAUAUUAAUUCUAUUUUGA	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN55950_c0_g1_592_TPlot.pdf
TRINITY_DN55950_c0_g1:593	si_a349	TRINITY_DN55950_c0_g1	582	602	593	-21.30	-18.00	0.845070422535211	4	1-11,602-592;13-20,590-583	12-12,591-591[SIL];21-21,582-582[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	AAAAAUAGAUUUAAUGUUUUC&GAAAAUAUUAAUUCUAUUUUG	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN55950_c0_g1_593_TPlot.pdf
TRINITY_DN55950_c0_g1:594	si_a348	TRINITY_DN55950_c0_g1	583	603	594	-21.10	-17.70	0.838862559241706	3	2-12,602-592;14-21,590-583	1-1,603-603[UP5];13-13,591-591[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	AAAAUAGAUUUAAUGUUUUCA&CGAAAAUAUUAAUUCUAUUUU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN55950_c0_g1_594_TPlot.pdf
TRINITY_DN55950_c0_g1:595	si_a347	TRINITY_DN55950_c0_g1	584	604	595	-23.50	-16.80	0.714893617021277	5	3-13,602-592;15-21,590-584	1-2,604-603[UP5];14-14,591-591[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAAUAGAUUUAAUGUUUUCAC&CCGAAAAUAUUAAUUCUAUUU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN55950_c0_g1_595_TPlot.pdf
TRINITY_DN5595_c0_g1:1557	si_s72	TRINITY_DN5595_c0_g1	1542	1566	1557	-24.10	-15.70	0.651452282157676	8.5	1-9,1566-1558;11-15,1556-1552;16-21,1547-1542	10-10,1557-1557[SIL];x-x,1551-1548[BULt]	((((((....(((((.(((((((((&))))))))).)))))----))))))	GGGGAAAAGCAGGAAUAAAGUAGAA&UUCUAUUUUUUUUCU----UUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5595_c0_g1_1557_TPlot.pdf
TRINITY_DN5595_c0_g1:3100	si_s493	TRINITY_DN5595_c0_g1	3089	3109	3100	-19.80	-13.00	0.656565656565657	8	1-15,3109-3095	16-21,3094-3089[UP3]	......(((((((((((((((&)))))))))))))))......	AAAUAAUGUUUAUAUUUAGGU&AUUUAAAUAUAAACAAAACAA	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN5595_c0_g1_3100_TPlot.pdf
TRINITY_DN5595_c0_g1:3103	si_s490	TRINITY_DN5595_c0_g1	3092	3112	3103	-17.80	-14.30	0.803370786516854	8	3-18,3110-3095	1-2,3112-3111[UP5];19-21,3094-3092[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAAUGUUUAUAUUUAGGUAUA&UUUAUUUAAAUAUAAACAAAA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN5595_c0_g1_3103_TPlot.pdf
TRINITY_DN5595_c0_g1:3104	si_s489	TRINITY_DN5595_c0_g1	3093	3113	3104	-17.90	-14.30	0.798882681564246	9	4-19,3110-3095	1-3,3113-3111[UP5];20-21,3094-3093[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAUGUUUAUAUUUAGGUAUAA&AUUUAUUUAAAUAUAAACAAA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN5595_c0_g1_3104_TPlot.pdf
TRINITY_DN5595_c0_g1:567	si_a320	TRINITY_DN5595_c0_g1	556	577	567	-24.40	-15.90	0.651639344262295	7.5	1-5,577-573;6-17,571-560;19-21,558-556	x-x,572-572[BULt];18-18,559-559[SIL]	(((.((((((((((((.(((((&)))))-)))))))))))).)))	GAAAAAGGAAAUCGUGUGGUGG&UUAUC-CAUGAUUUUUUUAUUC	3	0.999999999608459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN5595_c0_g1_567_TPlot.pdf
TRINITY_DN5595_c0_g1:994	si_a69	TRINITY_DN5595_c0_g1	983	1003	994	-24.00	-15.96	0.665	10	2-7,1002-997;12-21,992-983	1-1,1003-1003[UP5];8-11,996-993[SIL]	((((((((((....((((((.&.))))))....))))))))))	AUGAAGAGCAUCCCGAAAGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999994615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5595_c0_g1_994_TPlot.pdf
TRINITY_DN5597_c0_g1:132	si_a60	TRINITY_DN5597_c0_g1	121	141	132	-32.20	-21.50	0.667701863354037	10	1-2,141-140;4-15,138-127	3-3,139-139[SIL];16-21,126-121[UP3]	......((((((((((((.((&)).))))))))))))......	GUUACAGGAGGAGCGAGUGGA&UCGACUCGCUUCUUUCAAAUU	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN5597_c0_g1_132_TPlot.pdf
TRINITY_DN55982_c0_g1:367	si_a604	TRINITY_DN55982_c0_g1	352	377	367	-31.60	-22.40	0.708860759493671	9	2-9,376-369;10-18,367-359;19-21,354-352	1-1,377-377[UP5];x-x,368-368[BULt];x-x,358-355[BULt]	(((....(((((((((.((((((((.&.))))))))-)))))))))----)))	GUCAGGUGAUUGGAGUGUGCGAAGAC&AUUUUCGCA-AUUCCAAUC----GAC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN55982_c0_g1_367_TPlot.pdf
TRINITY_DN5598_c0_g1:1846	si_a376	TRINITY_DN5598_c0_g1	1835	1855	1846	-23.90	-15.60	0.652719665271967	7	1-2,1855-1854;5-20,1851-1836	3-4,1853-1852[SIL];21-21,1835-1835[UP3]	.((((((((((((((((..((&))..)))))))))))))))).	AUAAUUUGGAAUUAUUUGGGA&UCAAAAAUGAUUUCGAAUUAA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a376_TRINITY_DN5598_c0_g1_1846_TPlot.pdf
TRINITY_DN559_c0_g1:2859	si_s77	TRINITY_DN559_c0_g1	2842	2868	2859	-25.50	-17.30	0.67843137254902	15	1-10,2868-2859;11-20,2852-2843	x-x,2858-2853[BULt];21-21,2842-2842[UP3]	.((((((((((......((((((((((&))))))))))------)))))))))).	AAAGAAAGGGAGUACAAAGAAAAAGAA&UUUUUUUUCU------UUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN559_c0_g1_2859_TPlot.pdf
TRINITY_DN559_c0_g1:2860	si_s76	TRINITY_DN559_c0_g1	2843	2869	2860	-23.60	-17.30	0.733050847457627	14.5	2-11,2868-2859;12-21,2852-2843	1-1,2869-2869[UP5];x-x,2858-2853[BULt]	((((((((((......((((((((((.&.))))))))))------))))))))))	AAGAAAGGGAGUACAAAGAAAAAGAAA&AUUUUUUUUCU------UUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN559_c0_g1_2860_TPlot.pdf
TRINITY_DN559_c0_g1:3099	si_s68	TRINITY_DN559_c0_g1	3089	3108	3099	-23.10	-16.60	0.718614718614719	3.5	1-12,3108-3097;15-20,3095-3090	13-14,3096-3096[AILq];21-21,3089-3089[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	CAAGGAAC-AAAUAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999970093256655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN559_c0_g1_3099_TPlot.pdf
TRINITY_DN559_c0_g1:3100	si_s67	TRINITY_DN559_c0_g1	3090	3109	3100	-25.60	-18.40	0.71875	3	1-13,3109-3097;16-21,3095-3090	14-15,3096-3096[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	AAGGAAC-AAAUAGAAGUUGU&GCAACUUCUAUUUUUUUUCUU	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN559_c0_g1_3100_TPlot.pdf
TRINITY_DN559_c0_g1:3101	si_s66	TRINITY_DN559_c0_g1	3091	3110	3101	-26.30	-18.20	0.692015209125475	3.5	1-14,3110-3097;17-21,3095-3091	15-16,3096-3096[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	AGGAAC-AAAUAGAAGUUGUU&AGCAACUUCUAUUUUUUUUCU	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN559_c0_g1_3101_TPlot.pdf
TRINITY_DN559_c0_g1:3145	si_s83	TRINITY_DN559_c0_g1	3135	3154	3145	-30.90	-21.40	0.692556634304207	3.5	1-14,3154-3141;17-20,3139-3136	15-16,3140-3140[AILq];21-21,3135-3135[UP3]	.((((.-((((((((((((((&))))))))))))))..)))).	AAAGAU-GAGAAAGGAAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN559_c0_g1_3145_TPlot.pdf
TRINITY_DN559_c0_g1:3146	si_s82	TRINITY_DN559_c0_g1	3136	3155	3146	-28.90	-21.60	0.747404844290658	3.5	2-15,3154-3141;18-21,3139-3136	1-1,3155-3155[UP5];16-17,3140-3140[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	AAGAU-GAGAAAGGAAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999998831755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN559_c0_g1_3146_TPlot.pdf
TRINITY_DN559_c0_g1:3147	si_s81	TRINITY_DN559_c0_g1	3137	3156	3147	-28.90	-22.40	0.775086505190311	3.5	1-16,3156-3141;19-21,3139-3137	17-18,3140-3140[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	AGAU-GAGAAAGGAAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	0.999995070517503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN559_c0_g1_3147_TPlot.pdf
TRINITY_DN559_c0_g1:3149	si_s79	TRINITY_DN559_c0_g1	3136	3158	3149	-26.20	-23.00	0.877862595419847	3	1-17,3158-3142;18-21,3139-3136	x-x,3141-3140[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	AAGAUGAGAAAGGAAAGAAGAAA&UUUUUUCUUUCCUUUCU--UCUU	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN559_c0_g1_3149_TPlot.pdf
TRINITY_DN559_c0_g1:3151	si_s77	TRINITY_DN559_c0_g1	3140	3160	3151	-25.50	-24.30	0.952941176470588	2.5	1-20,3160-3141	21-21,3140-3140[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UGAGAAAGGAAAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN559_c0_g1_3151_TPlot.pdf
TRINITY_DN559_c0_g1:3152	si_s76	TRINITY_DN559_c0_g1	3141	3161	3152	-23.60	-24.30	1	2.5	2-21,3160-3141	1-1,3161-3161[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GAGAAAGGAAAGAAGAAAAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN559_c0_g1_3152_TPlot.pdf
TRINITY_DN559_c0_g1:3153	si_s75	TRINITY_DN559_c0_g1	3142	3162	3153	-24.00	-23.20	0.966666666666667	4	3-21,3160-3142	1-2,3162-3161[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAAAGGAAAGAAGAAAAAAG&UAUUUUUUUUCUUUCCUUUCU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN559_c0_g1_3153_TPlot.pdf
TRINITY_DN559_c0_g1:3154	si_s74	TRINITY_DN559_c0_g1	3143	3162	3154	-25.00	-21.90	0.876	3	1-2,3162-3161;4-21,3160-3143	3-3,x-x[BULq]	((((((((((((((((((-((&)).))))))))))))))))))	GAAAGGAAAGAAGAAAAA-AG&CUAUUUUUUUUCUUUCCUUUC	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN559_c0_g1_3154_TPlot.pdf
TRINITY_DN559_c0_g1:3155	si_s73	TRINITY_DN559_c0_g1	3144	3163	3155	-24.00	-20.30	0.845833333333333	3	1-3,3163-3161;5-21,3160-3144	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	AAAGGAAAGAAGAAAAA-AGA&UCUAUUUUUUUUCUUUCCUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN559_c0_g1_3155_TPlot.pdf
TRINITY_DN559_c0_g1:3156	si_s72	TRINITY_DN559_c0_g1	3145	3164	3156	-24.10	-20.30	0.842323651452282	3	1-4,3164-3161;6-21,3160-3145	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AAGGAAAGAAGAAAAA-AGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN559_c0_g1_3156_TPlot.pdf
TRINITY_DN559_c0_g1:3157	si_s71	TRINITY_DN559_c0_g1	3146	3165	3157	-25.70	-19.60	0.762645914396887	4	2-5,3164-3161;7-21,3160-3146	1-1,3165-3165[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AGGAAAGAAGAAAAA-AGAAA&CUUCUAUUUUUUUUCUUUCCU	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN559_c0_g1_3157_TPlot.pdf
TRINITY_DN559_c0_g1:3158	si_s70	TRINITY_DN559_c0_g1	3147	3166	3158	-25.80	-18.30	0.709302325581395	5.5	3-6,3164-3161;8-21,3160-3147	1-2,3166-3165[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAAAGAAGAAAAA-AGAAAA&ACUUCUAUUUUUUUUCUUUCC	2	0.999997753698631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN559_c0_g1_3158_TPlot.pdf
TRINITY_DN559_c0_g1:3342	si_s82	TRINITY_DN559_c0_g1	3331	3351	3342	-28.90	-20.90	0.72318339100346	5.5	1-8,3351-3344;10-19,3342-3333	9-9,3343-3343[SIL];20-21,3332-3331[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	GCGAAGAAGAAAAGGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN559_c0_g1_3342_TPlot.pdf
TRINITY_DN559_c0_g1:3359	si_a784	TRINITY_DN559_c0_g1	3348	3369	3359	-24.70	-19.60	0.793522267206478	9	2-8,3368-3362;10-21,3359-3348	1-1,3369-3369[UP5];9-9,3361-3360[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	GAAGUGGAGGAGGAAGAAGAGG&ACUCUUCU-AUUUUUCUAUUUU	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN559_c0_g1_3359_TPlot.pdf
TRINITY_DN559_c0_g1:3360	si_a783	TRINITY_DN559_c0_g1	3349	3370	3360	-24.70	-18.50	0.748987854251012	10	3-9,3368-3362;11-21,3359-3349	1-2,3370-3369[UP5];10-10,3361-3360[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	AAGUGGAGGAGGAAGAAGAGGU&AACUCUUCU-AUUUUUCUAUUU	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN559_c0_g1_3360_TPlot.pdf
TRINITY_DN559_c0_g1:3497	si_s76	TRINITY_DN559_c0_g1	3481	3506	3497	-23.60	-17.30	0.733050847457627	8.5	2-15,3505-3492;16-21,3486-3481	1-1,3506-3506[UP5];x-x,3491-3487[BULt]	((((((.....((((((((((((((.&.))))))))))))))-----))))))	AGGAAACUGGUGGAAAGAAAGAAGAA&AUUUUUUUUCUUUCC-----UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN559_c0_g1_3497_TPlot.pdf
TRINITY_DN559_c0_g1:3503	si_s70	TRINITY_DN559_c0_g1	3492	3511	3503	-25.80	-20.90	0.810077519379845	5	2-6,3510-3506;8-21,3505-3492	1-1,3511-3511[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	GGAAAGAAAGAAGA-AGAAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN559_c0_g1_3503_TPlot.pdf
TRINITY_DN559_c0_g1:3514	si_s808	TRINITY_DN559_c0_g1	3503	3524	3514	-28.60	-20.20	0.706293706293706	8.5	2-6,3523-3519;8-19,3516-3505	1-1,3524-3524[UP5];7-7,3518-3517[AILt];20-21,3504-3503[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	AGAAGAAGAGGUAGAAGAAGAC&AUCUUC-GUUACCUUUUCUUAA	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN559_c0_g1_3514_TPlot.pdf
TRINITY_DN559_c0_g1:4053	si_s84	TRINITY_DN559_c0_g1	4042	4063	4053	-32.30	-23.30	0.721362229102167	7	1-5,4063-4059;6-11,4057-4052;13-20,4050-4043	x-x,4058-4058[BULt];12-12,4051-4051[SIL];21-21,4042-4042[UP3]	.((((((((.((((((.(((((&)))))-)))))).)))))))).	UGAAGAAGACGAGGGGAAAAGA&UCUUU-CCUUUCUUCUUCUUCG	3	0.999999901613011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN559_c0_g1_4053_TPlot.pdf
TRINITY_DN559_c0_g1:4182	si_s73	TRINITY_DN559_c0_g1	4169	4192	4182	-24.00	-16.20	0.675	6.5	1-4,4192-4189;5-13,4187-4179;14-21,4176-4169	x-x,4188-4188[BULt];x-x,4178-4177[BULt]	((((((((..(((((((((.((((&))))-)))))))))--))))))))	AGAGGAAACUGAAGAAAAACUGGA&UCUA-UUUUUUUUC--UUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN559_c0_g1_4182_TPlot.pdf
TRINITY_DN559_c0_g1:4183	si_s72	TRINITY_DN559_c0_g1	4170	4193	4183	-24.10	-16.30	0.676348547717842	6.5	1-5,4193-4189;6-14,4187-4179;15-21,4176-4170	x-x,4188-4188[BULt];x-x,4178-4177[BULt]	(((((((..(((((((((.(((((&)))))-)))))))))--)))))))	GAGGAAACUGAAGAAAAACUGGAA&UUCUA-UUUUUUUUC--UUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN559_c0_g1_4183_TPlot.pdf
TRINITY_DN559_c0_g1:4184	si_s71	TRINITY_DN559_c0_g1	4171	4194	4184	-25.70	-18.10	0.704280155642023	6	1-6,4194-4189;7-15,4187-4179;16-21,4176-4171	x-x,4188-4188[BULt];x-x,4178-4177[BULt]	((((((..(((((((((.((((((&))))))-)))))))))--))))))	AGGAAACUGAAGAAAAACUGGAAG&CUUCUA-UUUUUUUUC--UUUCCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN559_c0_g1_4184_TPlot.pdf
TRINITY_DN559_c0_g1:4241	si_a317	TRINITY_DN559_c0_g1	4230	4252	4241	-24.30	-16.30	0.670781893004115	8.5	1-5,4252-4248;7-9,4246-4244;10-20,4241-4231	6-6,4247-4247[SIL];x-x,4243-4242[BULt];21-21,4230-4230[UP3]	.(((((((((((..(((.(((((&))))).)))--))))))))))).	GAAGAAAAUCAUAAGGAGGAAUC&GAUUUAUCC--AUGAUUUUUUUA	2	0.999984147449623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN559_c0_g1_4241_TPlot.pdf
TRINITY_DN559_c0_g1:4293	si_a784	TRINITY_DN559_c0_g1	4282	4301	4293	-24.70	-16.20	0.65587044534413	6.5	3-8,4299-4294;10-20,4293-4283	1-2,4301-4300[UP5];9-9,x-x[BULq];21-21,4282-4282[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	CGAAUAGAAAAA-AGAAGAAG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN559_c0_g1_4293_TPlot.pdf
TRINITY_DN559_c0_g1:4294	si_a783	TRINITY_DN559_c0_g1	4283	4302	4294	-24.70	-16.20	0.65587044534413	7.5	4-9,4299-4294;11-21,4293-4283	1-3,4302-4300[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	GAAUAGAAAAA-AGAAGAAGA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN559_c0_g1_4294_TPlot.pdf
TRINITY_DN559_c0_g1:4777	si_s88	TRINITY_DN559_c0_g1	4763	4786	4777	-34.80	-23.10	0.663793103448276	12	3-11,4784-4776;12-20,4772-4764	1-2,4786-4785[UP5];x-x,4775-4773[BULt];21-21,4763-4763[UP3]	.(((((((((...(((((((((..&..)))))))))---))))))))).	AGGGCGAAGAACUAGAGGAAAGAA&UCCUUUCUUCU---UCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN559_c0_g1_4777_TPlot.pdf
TRINITY_DN559_c0_g1:4781	si_s79	TRINITY_DN559_c0_g1	4766	4790	4781	-26.20	-18.80	0.717557251908397	9.5	3-14,4788-4777;15-19,4772-4768	1-2,4790-4789[UP5];x-x,4776-4773[BULt];20-21,4767-4766[UP3]	..(((((....((((((((((((..&..))))))))))))----)))))..	GCGAAGAACUAGAGGAAAGAAAACA&UUUUUUCUUUCCUU----UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN559_c0_g1_4781_TPlot.pdf
TRINITY_DN559_c0_g1:4783	si_s77	TRINITY_DN559_c0_g1	4768	4792	4783	-25.50	-18.50	0.725490196078431	11.5	5-16,4788-4777;17-21,4772-4768	1-4,4792-4789[UP5];x-x,4776-4773[BULt]	(((((....((((((((((((....&....))))))))))))----)))))	GAAGAACUAGAGGAAAGAAAACAAC&UUUUUUUUCUUUCCUU----UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN559_c0_g1_4783_TPlot.pdf
TRINITY_DN559_c0_g1:4828	si_a498	TRINITY_DN559_c0_g1	4817	4837	4828	-33.50	-22.50	0.671641791044776	6.5	3-17,4835-4821;19-21,4819-4817	1-2,4837-4836[UP5];18-18,4820-4820[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	CAGUGAAGAUGAAAGACGAAG&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999934549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN559_c0_g1_4828_TPlot.pdf
TRINITY_DN559_c0_g1:4911	si_s83	TRINITY_DN559_c0_g1	4896	4925	4911	-30.90	-20.50	0.663430420711974	18.5	1-5,4925-4921;6-10,4915-4911;11-21,4906-4896	x-x,4920-4916[BULt];x-x,4910-4907[BULt]	(((((((((((....(((((.....(((((&)))))-----)))))----)))))))))))	GAAGAAGAGGACGAAAAGGACAGCGAAGAA&UUCUU-----UCCUU----UCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN559_c0_g1_4911_TPlot.pdf
TRINITY_DN559_c0_g1:4963	si_a330	TRINITY_DN559_c0_g1	4952	4972	4963	-30.50	-20.20	0.662295081967213	7.5	1-7,4972-4966;9-18,4964-4955	8-8,4965-4965[SIL];19-21,4954-4952[UP3]	...((((((((((.(((((((&))))))).))))))))))...	GCAGGACGAGGAAAAAGAGAA&UUUUUUUAUUCCUUGUCCCGA	4	0.999999602727879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN559_c0_g1_4963_TPlot.pdf
TRINITY_DN559_c0_g1:934	si_s81	TRINITY_DN559_c0_g1	917	943	934	-28.90	-18.80	0.650519031141869	10	1-10,943-934;11-14,931-928;15-21,923-917	x-x,933-932[BULt];x-x,927-924[BULt]	(((((((....((((..((((((((((&))))))))))--))))----)))))))	AGAAGAAAGAUGAAAAUGGAGAGAAGA&UUUUCUUUCC--UUUC----UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN559_c0_g1_934_TPlot.pdf
TRINITY_DN559_c0_g1:936	si_s79	TRINITY_DN559_c0_g1	916	945	936	-26.20	-18.60	0.709923664122137	21	1-12,945-934;13-20,924-917	x-x,933-925[BULt];21-21,916-916[UP3]	.((((((((.........((((((((((((&))))))))))))---------)))))))).	CAGAAGAAAGAUGAAAAUGGAGAGAAGAAA&UUUUUUCUUUCC---------UUUCUUCUU	2	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN559_c0_g1_936_TPlot.pdf
TRINITY_DN559_c0_g1:937	si_s78	TRINITY_DN559_c0_g1	917	946	937	-26.20	-19.50	0.744274809160305	11	1-13,946-934;14-21,924-917	x-x,933-925[BULt]	((((((((.........(((((((((((((&)))))))))))))---------))))))))	AGAAGAAAGAUGAAAAUGGAGAGAAGAAAA&UUUUUUUCUUUCC---------UUUCUUCU	4	0.999999999999688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN559_c0_g1_937_TPlot.pdf
TRINITY_DN559_c0_g1:938	si_s77	TRINITY_DN559_c0_g1	918	947	938	-25.50	-19.00	0.745098039215686	11	1-14,947-934;15-21,924-918	x-x,933-925[BULt]	(((((((.........((((((((((((((&))))))))))))))---------)))))))	GAAGAAAGAUGAAAAUGGAGAGAAGAAAAA&UUUUUUUUCUUUCC---------UUUCUUC	3	0.999999999999865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN559_c0_g1_938_TPlot.pdf
TRINITY_DN559_c0_g1:940	si_s75	TRINITY_DN559_c0_g1	927	949	940	-24.00	-18.40	0.766666666666667	5	1-16,949-934;17-20,931-928	x-x,933-932[BULt];21-21,927-927[UP3]	.((((..((((((((((((((((&))))))))))))))))--)))).	UGAAAAUGGAGAGAAGAAAAAUG&UAUUUUUUUUCUUUCC--UUUCU	3	0.99999997413699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN559_c0_g1_940_TPlot.pdf
TRINITY_DN559_c0_g1:941	si_s74	TRINITY_DN559_c0_g1	928	950	941	-25.00	-18.70	0.748	5.5	2-17,949-934;18-21,931-928	1-1,950-950[UP5];x-x,933-932[BULt]	((((..((((((((((((((((.&.))))))))))))))))--))))	GAAAAUGGAGAGAAGAAAAAUGA&CUAUUUUUUUUCUUUCC--UUUC	4	0.999998788870254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN559_c0_g1_941_TPlot.pdf
TRINITY_DN559_c0_g1:942	si_s73	TRINITY_DN559_c0_g1	931	951	942	-24.00	-18.20	0.758333333333333	8.5	3-18,949-934	1-2,951-950[UP5];19-21,933-931[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAUGGAGAGAAGAAAAAUGAA&UCUAUUUUUUUUCUUUCCUUU	4	0.999999898279812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN559_c0_g1_942_TPlot.pdf
TRINITY_DN559_c0_g1:943	si_s72	TRINITY_DN559_c0_g1	932	951	943	-24.10	-18.40	0.763485477178423	5.5	1-3,951-949;5-19,948-934	4-4,x-x[BULq];20-21,933-932[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	AUGGAGAGAAGAAAAAU-GAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999720304535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN559_c0_g1_943_TPlot.pdf
TRINITY_DN559_c0_g1:944	si_s71	TRINITY_DN559_c0_g1	933	952	944	-25.70	-18.60	0.723735408560311	5.5	2-4,951-949;6-20,948-934	1-1,952-952[UP5];5-5,x-x[BULq];21-21,933-933[UP3]	.(((((((((((((((-(((.&.))).))))))))))))))).	UGGAGAGAAGAAAAAU-GAAU&CUUCUAUUUUUUUUCUUUCCU	2	0.999999630426837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN559_c0_g1_944_TPlot.pdf
TRINITY_DN559_c0_g1:945	si_s70	TRINITY_DN559_c0_g1	934	953	945	-25.80	-18.20	0.705426356589147	6	3-5,951-949;7-21,948-934	1-2,953-952[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GGAGAGAAGAAAAAU-GAAUU&ACUUCUAUUUUUUUUCUUUCC	3	0.999999999929939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN559_c0_g1_945_TPlot.pdf
TRINITY_DN559_c0_g1:975	si_s80	TRINITY_DN559_c0_g1	964	984	975	-28.20	-18.80	0.666666666666667	5.5	1-10,984-975;12-19,973-966	11-11,974-974[SIL];20-21,965-964[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AUAGAGGAAAAGAAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN559_c0_g1_975_TPlot.pdf
TRINITY_DN559_c0_g1:979	si_s76	TRINITY_DN559_c0_g1	968	988	979	-23.60	-16.70	0.707627118644068	4.5	2-14,987-975;16-21,973-968	1-1,988-988[UP5];15-15,974-974[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AGGAAAAGAAAGAAGAAAAGC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN559_c0_g1_979_TPlot.pdf
TRINITY_DN55_c0_g1:1142	si_a711	TRINITY_DN55_c0_g1	1131	1151	1142	-27.90	-19.00	0.681003584229391	6	1-10,1151-1142;13-19,1140-1134;20-21,1132-1131	11-12,1141-1141[AILq];x-x,1133-1133[BULt]	((.(((((((.-((((((((((&))))))))))..)))))))-))	GGCUAGCGAUC-UUUUGGAAUG&CAUUCCAAAAUAAUCGUUA-CU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN55_c0_g1_1142_TPlot.pdf
TRINITY_DN55_c0_g1:1143	si_a710	TRINITY_DN55_c0_g1	1133	1152	1143	-28.00	-18.90	0.675	5.5	2-11,1151-1142;14-20,1140-1134	1-1,1152-1152[UP5];12-13,1141-1141[AILq];21-21,1133-1133[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	CUAGCGAUC-UUUUGGAAUGG&ACAUUCCAAAAUAAUCGUUAC	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a710_TRINITY_DN55_c0_g1_1143_TPlot.pdf
TRINITY_DN55_c0_g1:1144	si_a709	TRINITY_DN55_c0_g1	1134	1153	1144	-26.60	-18.90	0.710526315789474	5.5	3-12,1151-1142;15-21,1140-1134	1-2,1153-1152[UP5];13-14,1141-1141[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	UAGCGAUC-UUUUGGAAUGGA&UACAUUCCAAAAUAAUCGUUA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN55_c0_g1_1144_TPlot.pdf
TRINITY_DN55_c0_g1:1786	si_a327	TRINITY_DN55_c0_g1	1776	1795	1786	-28.40	-19.30	0.679577464788732	6.5	1-11,1795-1785;14-20,1783-1777	12-13,1784-1784[AILq];21-21,1776-1776[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	CGACGAGGC-UGAAAGAAUCA&UGAUUUUUUUAUUCCUUGUCC	2	0.999554633169128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN55_c0_g1_1786_TPlot.pdf
TRINITY_DN55_c0_g1:1789	si_a324	TRINITY_DN55_c0_g1	1779	1798	1789	-27.50	-22.20	0.807272727272727	4	1-14,1798-1785;17-21,1783-1779	15-16,1784-1784[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	CGAGGC-UGAAAGAAUCAUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN55_c0_g1_1789_TPlot.pdf
TRINITY_DN55_c0_g1:1790	si_a323	TRINITY_DN55_c0_g1	1780	1799	1790	-26.80	-21.40	0.798507462686567	4	1-15,1799-1785;18-21,1783-1780	16-17,1784-1784[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	GAGGC-UGAAAGAAUCAUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN55_c0_g1_1790_TPlot.pdf
TRINITY_DN55_c0_g1:1793	si_a320	TRINITY_DN55_c0_g1	1782	1802	1793	-24.40	-18.20	0.745901639344262	7.5	4-18,1799-1785;20-21,1783-1782	1-3,1802-1800[UP5];19-19,1784-1784[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GGCUGAAAGAAUCAUGGAGAA&UUAUCCAUGAUUUUUUUAUUC	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN55_c0_g1_1793_TPlot.pdf
TRINITY_DN55_c0_g1:1794	si_a319	TRINITY_DN55_c0_g1	1783	1803	1794	-22.40	-17.90	0.799107142857143	10	5-19,1799-1785	1-4,1803-1800[UP5];20-21,1784-1783[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCUGAAAGAAUCAUGGAGAAA&UUUAUCCAUGAUUUUUUUAUU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN55_c0_g1_1794_TPlot.pdf
TRINITY_DN55_c0_g1:1795	si_a318	TRINITY_DN55_c0_g1	1784	1805	1795	-22.50	-17.90	0.795555555555555	6	1-4,1805-1802;6-20,1799-1785	5-5,1801-1800[AILt];21-21,1784-1784[UP3]	.(((((((((((((((..((((&))))-.))))))))))))))).	CUGAAAGAAUCAUGGAGAAAAU&AUUU-AUCCAUGAUUUUUUUAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN55_c0_g1_1795_TPlot.pdf
TRINITY_DN55_c0_g1:2233	si_s206	TRINITY_DN55_c0_g1	2221	2243	2233	-33.00	-22.40	0.678787878787879	10.5	4-6,2240-2238;7-13,2236-2230;14-20,2228-2222	1-3,2243-2241[UP5];x-x,2237-2237[BULt];x-x,2229-2229[BULt];21-21,2221-2221[UP3]	.(((((((.(((((((.(((...&...)))-)))))))-))))))).	AUCGAACGUCAACUGGAUGCUGU&AAUGUA-CCAGUUG-UGUUCGAA	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN55_c0_g1_2233_TPlot.pdf
TRINITY_DN55_c0_g1:2234	si_s205	TRINITY_DN55_c0_g1	2222	2244	2234	-34.90	-24.20	0.693409742120344	8.5	1-2,2244-2243;5-7,2240-2238;8-14,2236-2230;15-21,2228-2222	3-4,2242-2241[SIL];x-x,2237-2237[BULt];x-x,2229-2229[BULt]	(((((((.(((((((.(((..((&))..)))-)))))))-)))))))	UCGAACGUCAACUGGAUGCUGUC&GAAUGUA-CCAGUUG-UGUUCGA	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN55_c0_g1_2234_TPlot.pdf
TRINITY_DN55_c0_g1:251	si_s73	TRINITY_DN55_c0_g1	238	260	251	-24.00	-16.20	0.675	10	2-15,259-246;16-18,243-241	1-1,260-260[UP5];x-x,245-244[BULt];19-21,240-238[UP3]	...(((..((((((((((((((.&.))))))))))))))--)))...	CAUGGAACAAGAAGAGGAAUGGG&UCUAUUUUUUUUCUU--UCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN55_c0_g1_251_TPlot.pdf
TRINITY_DN55_c0_g1:256	si_s83	TRINITY_DN55_c0_g1	245	266	256	-30.90	-20.20	0.653721682847896	7.5	2-3,265-264;4-8,262-258;10-20,256-246	1-1,266-266[UP5];x-x,263-263[BULt];9-9,257-257[SIL];21-21,245-245[UP3]	.(((((((((((.(((((.((.&.))-))))).))))))))))).	CAAGAAGAGGAAUGGGAACGAG&UUC-UUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN55_c0_g1_256_TPlot.pdf
TRINITY_DN55_c0_g1:3367	si_a880	TRINITY_DN55_c0_g1	3349	3376	3367	-27.80	-18.60	0.669064748201439	22	4-11,3373-3366;12-21,3358-3349	1-3,3376-3374[UP5];x-x,3365-3359[BULt]	((((((((((.......((((((((...&...))))))))-------))))))))))	UGCUAUGUUGCAUACAUGUUGCAGCGAU&UUAGUUGCAAU-------CAAUAUAGUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a880_TRINITY_DN55_c0_g1_3367_TPlot.pdf
TRINITY_DN55_c0_g1:3615	si_a124	TRINITY_DN55_c0_g1	3604	3625	3615	-25.10	-18.10	0.721115537848606	8.5	1-5,3625-3621;6-17,3619-3608	x-x,3620-3620[BULt];18-21,3607-3604[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	UGCCCUGUUGCUGUAGUAACAA&UUGUU-UUAUAGCAAUAGUAAU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN55_c0_g1_3615_TPlot.pdf
TRINITY_DN55_c0_g1:4749	si_a717	TRINITY_DN55_c0_g1	4736	4758	4749	-32.40	-21.60	0.666666666666667	16	8-16,4751-4743;17-21,4740-4736	1-7,4758-4752[UP5];x-x,4742-4741[BULt]	(((((..(((((((((.......&.......)))))))))--)))))	UGCCCUUGAGUGACGAGUAAUAG&AAAAUAAUCGUUACUC--GGGCA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a717_TRINITY_DN55_c0_g1_4749_TPlot.pdf
TRINITY_DN55_c0_g1:4976	si_a418	TRINITY_DN55_c0_g1	4964	4985	4976	-21.20	-13.90	0.655660377358491	6	2-3,4984-4983;6-17,4980-4969;18-21,4967-4964	1-1,4985-4985[UP5];4-5,4982-4981[SIL];x-x,4968-4968[BULt]	((((.((((((((((((..((.&.))..))))))))))))-))))	AUCCAUAUAUUUAUUUAUUUAC&AUAUUUAAAUAAAUAUA-GGAU	2	0.968571161233685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN55_c0_g1_4976_TPlot.pdf
TRINITY_DN55_c0_g1:527	si_a437	TRINITY_DN55_c0_g1	516	536	527	-31.90	-22.10	0.692789968652038	8.5	2-5,535-532;7-16,530-521	1-1,536-536[UP5];6-6,531-531[SIL];17-21,520-516[UP3]	.....((((((((((.((((.&.)))).)))))))))).....	UCAAACUCGUAUCCAUCGGAG&AUCCGUUGGAUAUGAGAUAAU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a437_TRINITY_DN55_c0_g1_527_TPlot.pdf
TRINITY_DN55_c0_g1:545	si_a321	TRINITY_DN55_c0_g1	533	554	545	-26.70	-17.50	0.655430711610487	6	1-4,554-551;6-17,549-538;18-21,536-533	5-5,550-550[SIL];x-x,537-537[BULt]	((((.((((((((((((.((((&)))).))))))))))))-))))	GGAGCUGAAGAAAUCGUUGAUG&UAUCCAUGAUUUUUUUA-UUCC	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN55_c0_g1_545_TPlot.pdf
TRINITY_DN55_c0_g1:61	si_a734	TRINITY_DN55_c0_g1	47	69	61	-42.40	-28.60	0.674528301886792	9	2-4,68-66;6-14,65-57;15-19,53-49	1-1,69-69[UP5];5-5,x-x[BULq];x-x,56-54[BULt];20-21,48-47[UP3]	..(((((...(((((((((-(((.&.))).)))))))))---)))))..	CGGGCCAAGUGGGGUAGAG-UGCG&GGCAUCUUUACCCC---UGGCCAU	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN55_c0_g1_61_TPlot.pdf
TRINITY_DN56008_c0_g1:586	si_s431	TRINITY_DN56008_c0_g1	576	595	586	-21.10	-13.90	0.658767772511848	9	4-11,592-585;13-20,584-577	1-3,595-593[UP5];12-12,x-x[BULq];21-21,576-576[UP3]	.((((((((-((((((((...&...)))))))).)))))))).	CUAAUAUGU-AUUGUUGUGGU&AUAACAAUAAUUACAUAUUAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN56008_c0_g1_586_TPlot.pdf
TRINITY_DN56008_c0_g1:772	si_s69	TRINITY_DN56008_c0_g1	761	781	772	-23.40	-15.40	0.658119658119658	11	3-8,779-774;11-13,771-769;15-21,767-761	1-2,781-780[UP5];9-10,773-772[SIL];14-14,768-768[SIL]	(((((((.(((..((((((..&..))))))..))).)))))))	GGAGGAGUGGAUUUAGAAGGU&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN56008_c0_g1_772_TPlot.pdf
TRINITY_DN56032_c0_g1:147	si_s436	TRINITY_DN56032_c0_g1	136	156	147	-19.60	-13.60	0.693877551020408	4.5	1-8,156-149;10-20,147-137	9-9,148-148[SIL];21-21,136-136[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	AAUAUGUAAUAUUUAAUUGUU&AAUAAUUACAUAUUAUAUAUA	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN56032_c0_g1_147_TPlot.pdf
TRINITY_DN56045_c0_g1:413	si_s888	TRINITY_DN56045_c0_g1	411	422	413	-26.80	-18.10	0.675373134328358	1	11-21,421-411	10-10,422-422[SIL]	(((((((((((.&.)))))))))))	AAGAGAAAGCCA&AAAAUAAAUAGG	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN56045_c0_g1_413_TPlot.pdf
TRINITY_DN5604_c0_g1:130	si_s76	TRINITY_DN5604_c0_g1	120	139	130	-23.60	-16.60	0.703389830508475	9	3-12,137-128;14-20,127-121	1-2,139-138[UP5];13-13,x-x[BULq];21-21,120-120[UP3]	.(((((((-((((((((((..&..)))))))))).))))))).	CAGAAAGG-GAGAAGGAGACG&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5604_c0_g1_130_TPlot.pdf
TRINITY_DN5604_c0_g1:131	si_s75	TRINITY_DN5604_c0_g1	121	140	131	-24.00	-16.60	0.691666666666667	9.5	4-13,137-128;15-21,127-121	1-3,140-138[UP5];14-14,x-x[BULq]	(((((((-((((((((((...&...)))))))))).)))))))	AGAAAGG-GAGAAGGAGACGA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5604_c0_g1_131_TPlot.pdf
TRINITY_DN5604_c0_g1:132	si_s811	TRINITY_DN5604_c0_g1	121	141	132	-26.40	-17.30	0.65530303030303	10	1-6,141-136;8-16,134-126	7-7,135-135[SIL];17-21,125-121[UP3]	.....(((((((((.((((((&)))))).))))))))).....	AGAAAGGGAGAAGGAGACGAA&UUCGUUACCUUUUCUUAAUAA	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN5604_c0_g1_132_TPlot.pdf
TRINITY_DN5605_c2_g1:1967	si_a629	TRINITY_DN5605_c2_g1	1956	1978	1967	-26.30	-18.60	0.707224334600761	7	1-6,1978-1973;7-13,1970-1964;15-21,1962-1956	x-x,1972-1971[BULt];14-14,1963-1963[SIL]	(((((((.(((((((..((((((&))))))--))))))).)))))))	CGAAAAGUUCGACGUCGAAUACG&CGUAUU--AUGUCGAUUUUUUUG	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN5605_c2_g1_1967_TPlot.pdf
TRINITY_DN5605_c2_g1:2054	si_s101	TRINITY_DN5605_c2_g1	2043	2065	2054	-32.50	-22.50	0.692307692307692	10.5	3-8,2063-2058;9-20,2055-2044	1-2,2065-2064[UP5];x-x,2057-2056[BULt];21-21,2043-2043[UP3]	.((((((((((((..((((((..&..))))))--)))))))))))).	AAUUUUCCGAUCUAAGAGGCGUU&UUCGCUUC--GGAUUGGAAAAUA	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN5605_c2_g1_2054_TPlot.pdf
TRINITY_DN56062_c0_g1:172	si_a884	TRINITY_DN56062_c0_g1	161	181	172	-25.60	-17.60	0.6875	9.5	3-16,179-166	1-2,181-180[UP5];17-21,165-161[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAAAAAUUAUGUUGAUUGCGU&UUGCAAUCAAUAUAGUAAUAA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN56062_c0_g1_172_TPlot.pdf
TRINITY_DN5606_c0_g1:1114	si_a419	TRINITY_DN5606_c0_g1	1103	1123	1114	-23.00	-15.60	0.678260869565217	10.5	6-20,1118-1104	1-5,1123-1119[UP5];21-21,1103-1103[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAUCCUGUAUUUAUUUUCGGU&UAUUUAAAUAAAUAUAGGAUC	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN5606_c0_g1_1114_TPlot.pdf
TRINITY_DN5606_c0_g1:1116	si_a417	TRINITY_DN5606_c0_g1	1105	1125	1116	-21.40	-14.60	0.682242990654206	13.5	8-21,1118-1105	1-7,1125-1119[UP5]	((((((((((((((.......&.......))))))))))))))	UCCUGUAUUUAUUUUCGGUCA&UAUAUUUAAAUAAAUAUAGGA	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN5606_c0_g1_1116_TPlot.pdf
TRINITY_DN5609_c0_g2:4175	si_s32	TRINITY_DN5609_c0_g2	4164	4184	4175	-24.80	-16.20	0.653225806451613	7	3-12,4182-4173;15-20,4170-4165	1-2,4184-4183[UP5];13-14,4172-4171[SIL];21-21,4164-4164[UP3]	.((((((..((((((((((..&..))))))))))..)))))).	UUUAUUAUUGGUUUAGUUGAG&UGCAACUAAAUCUUUAAUAAU	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN5609_c0_g2_4175_TPlot.pdf
TRINITY_DN560_c0_g1:475	si_s68	TRINITY_DN560_c0_g1	463	484	475	-23.10	-15.06	0.651948051948052	11.5	1-10,484-475;17-21,467-463	11-16,474-468[AILt]	(((((.......((((((((((&))))))))))-......)))))	GAAGAUAUUCCUAUGGAAGUUG&CAACUUCUAU-UUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN560_c0_g1_475_TPlot.pdf
TRINITY_DN5614_c0_g1:709	si_s68	TRINITY_DN5614_c0_g1	697	718	709	-23.10	-15.20	0.658008658008658	8	4-13,715-706;14-21,704-697	1-3,718-716[UP5];x-x,705-705[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AAGGAAAAUGAAAUAGGAGAAU&CAACUUCUAUUUU-UUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5614_c0_g1_709_TPlot.pdf
TRINITY_DN5615_c0_g1:1140	si_s524	TRINITY_DN5615_c0_g1	1129	1149	1140	-23.90	-15.70	0.656903765690377	14.5	7-20,1143-1130	1-6,1149-1144[UP5];21-21,1129-1129[UP3]	.((((((((((((((......&......)))))))))))))).	GCGAGGAUGGUUUCGUGAGAA&UUAAUUCGAAAUCAUUUUUGA	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN5615_c0_g1_1140_TPlot.pdf
TRINITY_DN5615_c0_g1:368	si_s367	TRINITY_DN5615_c0_g1	357	377	368	-39.40	-26.30	0.66751269035533	11.5	6-12,372-366;14-20,364-358	1-5,377-373[UP5];13-13,365-365[SIL];21-21,357-357[UP3]	.(((((((.(((((((.....&.....))))))).))))))).	GAUGCGAGGGAUCGGUGGCCG&AUUGAACCGAUCGCUCGCGUG	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN5615_c0_g1_368_TPlot.pdf
TRINITY_DN5615_c0_g1:420	si_a121	TRINITY_DN5615_c0_g1	409	429	420	-29.30	-19.70	0.672354948805461	10.5	1-15,429-415	16-21,414-409[UP3]	......(((((((((((((((&)))))))))))))))......	AGGGACGUUGUGGAGCAAGCU&AGCUUGUUUUAUAGCAAUAGU	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN5615_c0_g1_420_TPlot.pdf
TRINITY_DN5615_c0_g1:422	si_a119	TRINITY_DN5615_c0_g1	411	431	422	-30.30	-22.20	0.732673267326733	10	1-1,431-431;3-17,429-415	2-2,430-430[SIL];18-21,414-411[UP3]	....(((((((((((((((.(&).)))))))))))))))....	GGACGUUGUGGAGCAAGCUGG&CGAGCUUGUUUUAUAGCAAUA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN5615_c0_g1_422_TPlot.pdf
TRINITY_DN5615_c0_g1:424	si_a117	TRINITY_DN5615_c0_g1	413	433	424	-31.00	-22.40	0.72258064516129	10	3-3,431-431;5-19,429-415	1-2,433-432[UP5];4-4,430-430[SIL];20-21,414-413[UP3]	..(((((((((((((((.(..&..).)))))))))))))))..	ACGUUGUGGAGCAAGCUGGGC&UACGAGCUUGUUUUAUAGCAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN5615_c0_g1_424_TPlot.pdf
TRINITY_DN5615_c0_g1:425	si_a116	TRINITY_DN5615_c0_g1	414	434	425	-31.10	-22.40	0.720257234726688	11	4-4,431-431;6-20,429-415	1-3,434-432[UP5];5-5,430-430[SIL];21-21,414-414[UP3]	.(((((((((((((((.(...&...).))))))))))))))).	CGUUGUGGAGCAAGCUGGGCA&AUACGAGCUUGUUUUAUAGCA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN5615_c0_g1_425_TPlot.pdf
TRINITY_DN5615_c0_g1:426	si_a115	TRINITY_DN5615_c0_g1	415	435	426	-30.40	-22.00	0.723684210526316	11.5	5-5,431-431;7-21,429-415	1-4,435-432[UP5];6-6,430-430[SIL]	(((((((((((((((.(....&....).)))))))))))))))	GUUGUGGAGCAAGCUGGGCAU&AAUACGAGCUUGUUUUAUAGC	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN5615_c0_g1_426_TPlot.pdf
TRINITY_DN5615_c0_g1:428	si_a113	TRINITY_DN5615_c0_g1	417	437	428	-26.20	-18.00	0.687022900763359	15	7-7,431-431;9-21,429-417	1-6,437-432[UP5];8-8,430-430[SIL]	(((((((((((((.(......&......).)))))))))))))	UGUGGAGCAAGCUGGGCAUUU&AAAAUACGAGCUUGUUUUAUA	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN5615_c0_g1_428_TPlot.pdf
TRINITY_DN5615_c0_g1:701	si_s818	TRINITY_DN5615_c0_g1	690	710	701	-23.70	-17.70	0.746835443037975	8	1-7,710-704;9-17,702-694	8-8,703-703[SIL];18-21,693-690[UP3]	....(((((((((.(((((((&))))))).)))))))))....	GAUAUCAUUGUUACGAAAGGG&CCUUUUCUUAAUAAUGAAAAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN5615_c0_g1_701_TPlot.pdf
TRINITY_DN5615_c0_g1:702	si_s817	TRINITY_DN5615_c0_g1	691	711	702	-24.50	-17.90	0.730612244897959	7.5	2-8,710-704;10-18,702-694	1-1,711-711[UP5];9-9,703-703[SIL];19-21,693-691[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	AUAUCAUUGUUACGAAAGGGG&ACCUUUUCUUAAUAAUGAAAA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN5615_c0_g1_702_TPlot.pdf
TRINITY_DN5615_c0_g1:703	si_s816	TRINITY_DN5615_c0_g1	692	712	703	-24.90	-17.90	0.718875502008032	8.5	3-9,710-704;11-19,702-694	1-2,712-711[UP5];10-10,703-703[SIL];20-21,693-692[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	UAUCAUUGUUACGAAAGGGGU&UACCUUUUCUUAAUAAUGAAA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN5615_c0_g1_703_TPlot.pdf
TRINITY_DN5615_c0_g1:704	si_s815	TRINITY_DN5615_c0_g1	693	713	704	-25.00	-17.90	0.716	9.5	4-10,710-704;12-20,702-694	1-3,713-711[UP5];11-11,703-703[SIL];21-21,693-693[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	AUCAUUGUUACGAAAGGGGUU&UUACCUUUUCUUAAUAAUGAA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN5615_c0_g1_704_TPlot.pdf
TRINITY_DN5615_c0_g1:705	si_s814	TRINITY_DN5615_c0_g1	694	714	705	-26.60	-17.70	0.665413533834586	10.5	5-11,710-704;13-21,702-694	1-4,714-711[UP5];12-12,703-703[SIL]	(((((((((.(((((((....&....))))))).)))))))))	UCAUUGUUACGAAAGGGGUUC&GUUACCUUUUCUUAAUAAUGA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN5615_c0_g1_705_TPlot.pdf
TRINITY_DN5617_c8_g2:292	si_a65	TRINITY_DN5617_c8_g2	281	301	292	-27.70	-19.30	0.696750902527076	6	1-12,301-290;15-19,287-283	13-14,289-288[SIL];20-21,282-281[UP3]	..(((((..((((((((((((&))))))))))))..)))))..	UUAACGGAAUGAAAGAGGCGA&UCGCUUCUUUCAAAUUGUUUU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN5617_c8_g2_292_TPlot.pdf
TRINITY_DN561_c0_g1:1799	si_a249	TRINITY_DN561_c0_g1	1788	1808	1799	-41.10	-27.80	0.67639902676399	11.5	6-17,1803-1792;19-21,1790-1788	1-5,1808-1804[UP5];18-18,1791-1791[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	CCUGGAUGCAGUCGGGACUGA&GAUCCCCCGAUUGUAUCGAGG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a249_TRINITY_DN561_c0_g1_1799_TPlot.pdf
TRINITY_DN5621_c1_g1:1409	si_s69	TRINITY_DN5621_c1_g1	1398	1418	1409	-23.40	-15.40	0.658119658119658	10	3-17,1416-1402	1-2,1418-1417[UP5];18-21,1401-1398[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCCCGAAGGAAAAUAGGGGCG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5621_c1_g1_1409_TPlot.pdf
TRINITY_DN56227_c0_g1:305	si_s77	TRINITY_DN56227_c0_g1	291	314	305	-25.50	-19.30	0.756862745098039	7.5	1-13,314-302;14-21,298-291	x-x,301-299[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	GAAGAAGGAGCGAGAGGAAAAGGA&UUUUUUUUCUUUC---CUUUCUUC	4	0.999999999983584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN56227_c0_g1_305_TPlot.pdf
TRINITY_DN5623_c0_g1:149	si_s44	TRINITY_DN5623_c0_g1	138	162	149	-24.70	-17.90	0.724696356275304	9.5	1-7,162-156;8-21,151-138	x-x,155-152[BULt]	((((((((((((((....(((((((&)))))))----))))))))))))))	AUUUGAAAUCCAGUAUCUUAUUAAA&UUUAAUA----AUUGGAUUUCAAGU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN5623_c0_g1_149_TPlot.pdf
TRINITY_DN5624_c0_g1:1173	si_s509	TRINITY_DN5624_c0_g1	1162	1187	1173	-22.80	-16.20	0.710526315789474	14	2-6,1186-1182;7-20,1176-1163	1-1,1187-1187[UP5];x-x,1181-1177[BULt];21-21,1162-1162[UP3]	.((((((((((((((.....(((((.&.)))))-----)))))))))))))).	CGUUAAGGAUAUGGAGGAUCAUUGUA&AACAAU-----UCUAUAUUCUUAAUU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN5624_c0_g1_1173_TPlot.pdf
TRINITY_DN5624_c0_g1:1273	si_a464	TRINITY_DN5624_c0_g1	1262	1282	1273	-19.60	-13.70	0.698979591836735	8	1-14,1282-1269	15-21,1268-1262[UP3]	.......((((((((((((((&)))))))))))))).......	AAACGAAGCAUAUUAUAUAUG&UAUAUAUAAUAUGUAAUUAUU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN5624_c0_g1_1273_TPlot.pdf
TRINITY_DN5624_c0_g1:1274	si_a463	TRINITY_DN5624_c0_g1	1263	1283	1274	-19.70	-13.80	0.700507614213198	8.5	2-15,1282-1269	1-1,1283-1283[UP5];16-21,1268-1263[UP3]	......((((((((((((((.&.))))))))))))))......	AACGAAGCAUAUUAUAUAUGC&UUAUAUAUAAUAUGUAAUUAU	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5624_c0_g1_1274_TPlot.pdf
TRINITY_DN5624_c0_g1:1275	si_a462	TRINITY_DN5624_c0_g1	1264	1284	1275	-21.20	-13.80	0.650943396226415	9.5	3-16,1282-1269	1-2,1284-1283[UP5];17-21,1268-1264[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACGAAGCAUAUUAUAUAUGCG&GUUAUAUAUAAUAUGUAAUUA	3	0.999960616924559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN5624_c0_g1_1275_TPlot.pdf
TRINITY_DN5624_c0_g1:164	si_a896	TRINITY_DN5624_c0_g1	153	173	164	-21.60	-14.30	0.662037037037037	10	3-15,171-159	1-2,173-172[UP5];16-21,158-153[UP3]	......(((((((((((((..&..)))))))))))))......	UCUUAGUACUUAUUAUUGCAU&UAGUAAUAAUAAGUAAUAUAA	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN5624_c0_g1_164_TPlot.pdf
TRINITY_DN5624_c0_g1:351	si_s71	TRINITY_DN5624_c0_g1	334	360	351	-25.70	-18.10	0.704280155642023	9.5	2-13,359-348;14-21,341-334	1-1,360-360[UP5];x-x,347-342[BULt]	((((((((......((((((((((((.&.))))))))))))------))))))))	AGGAGAGAUGUAAUAAAAAAGUAGGAA&CUUCUAUUUUUUU------UCUUUCCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5624_c0_g1_351_TPlot.pdf
TRINITY_DN5625_c1_g1:444	si_s200	TRINITY_DN5625_c1_g1	433	452	444	-32.80	-22.00	0.670731707317073	8	1-6,452-447;9-19,445-435	7-8,446-446[AILq];20-21,434-433[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	GCCAACUGGUACGC-CCAGAA&UUUUGGAAUGUACCAGUUGUG	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN5625_c1_g1_444_TPlot.pdf
TRINITY_DN5625_c1_g1:446	si_s198	TRINITY_DN5625_c1_g1	435	454	446	-30.80	-22.70	0.737012987012987	7	2-8,453-447;11-21,445-435	1-1,454-454[UP5];9-10,446-446[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	CAACUGGUACGC-CCAGAAUC&UAUUUUGGAAUGUACCAGUUG	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s198_TRINITY_DN5625_c1_g1_446_TPlot.pdf
TRINITY_DN5625_c1_g1:487	si_a784	TRINITY_DN5625_c1_g1	474	496	487	-24.70	-17.90	0.724696356275304	9	1-13,496-484;14-18,481-477	x-x,483-482[BULt];19-21,476-474[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	GGCGUGGAGCAAAGUGGGAGAGU&ACUCUUCUAUUUU--UCUAUUUU	1	0.143148118672831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5625_c1_g1_487_TPlot.pdf
TRINITY_DN5625_c1_g1:488	si_a783	TRINITY_DN5625_c1_g1	475	497	488	-24.70	-18.20	0.736842105263158	9	2-14,496-484;15-19,481-477	1-1,497-497[UP5];x-x,483-482[BULt];20-21,476-475[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	GCGUGGAGCAAAGUGGGAGAGUG&AACUCUUCUAUUUU--UCUAUUU	2	0.996395813788016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5625_c1_g1_488_TPlot.pdf
TRINITY_DN5629_c0_g1:1489	si_s69	TRINITY_DN5629_c0_g1	1478	1498	1489	-23.40	-15.40	0.658119658119658	8.5	2-7,1497-1492;9-12,1490-1487;14-21,1485-1478	1-1,1498-1498[UP5];8-8,1491-1491[SIL];13-13,1486-1486[SIL]	((((((((.((((.((((((.&.)))))).)))).))))))))	GAGGGAGAUAGAGCAGGAGUC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5629_c0_g1_1489_TPlot.pdf
TRINITY_DN562_c0_g1:1303	si_s771	TRINITY_DN562_c0_g1	1292	1312	1303	-25.20	-16.50	0.654761904761905	7.5	1-5,1312-1308;7-17,1306-1296	6-6,1307-1307[SIL];18-21,1295-1292[UP3]	....(((((((((((.(((((&))))).)))))))))))....	CUGAAGCAAUAGUAAAUAGUU&GAUUAAUUACUAUUGCUAUAA	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN562_c0_g1_1303_TPlot.pdf
TRINITY_DN562_c0_g1:1660	si_a406	TRINITY_DN562_c0_g1	1648	1669	1660	-19.80	-13.50	0.681818181818182	7.5	1-13,1669-1657;15-18,1654-1651	14-14,1656-1655[AILt];19-21,1650-1648[UP3]	...((((..(((((((((((((&)))))))))))))-.))))...	AAGGAAUUCUAAACAAAGCAGU&AUUGUUUUGUUUA-UAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN562_c0_g1_1660_TPlot.pdf
TRINITY_DN562_c1_g1:686	si_a398	TRINITY_DN562_c1_g1	675	695	686	-22.40	-20.30	0.90625	6	3-20,693-676	1-2,695-694[UP5];21-21,675-675[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAGGCAAAACAAUUCUGUAAU&AAUAUAGAAUUGUUUUGUUUA	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN562_c1_g1_686_TPlot.pdf
TRINITY_DN562_c3_g1:12	si_a753	TRINITY_DN562_c3_g1	1	25	12	-33.10	-25.20	0.761329305135952	13.5	2-8,24-18;9-19,13-3	1-1,25-25[UP5];x-x,17-14[BULt];20-21,2-1[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	CCGAACCCAAGGGUCCGGGGUUCAA&AUGAACCU----CCUUUGGGUUUUU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN562_c3_g1_12_TPlot.pdf
TRINITY_DN562_c3_g1:13	si_a752	TRINITY_DN562_c3_g1	2	26	13	-34.80	-25.20	0.724137931034483	14.5	3-9,24-18;10-20,13-3	1-2,26-25[UP5];x-x,17-14[BULt];21-21,2-2[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	CGAACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN562_c3_g1_13_TPlot.pdf
TRINITY_DN5631_c0_g1:2454	si_s71	TRINITY_DN5631_c0_g1	2443	2463	2454	-25.70	-18.40	0.715953307392996	7.5	1-5,2463-2459;7-16,2457-2448;18-21,2446-2443	6-6,2458-2458[SIL];17-17,2447-2447[SIL]	((((.((((((((((.(((((&))))).)))))))))).))))	GGGACAGAAAGGAGAAAGAGG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999924868368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5631_c0_g1_2454_TPlot.pdf
TRINITY_DN5631_c0_g1:3964	si_a549	TRINITY_DN5631_c0_g1	3953	3973	3964	-29.50	-20.70	0.701694915254237	9	4-18,3970-3956;20-21,3954-3953	1-3,3973-3971[UP5];19-19,3955-3955[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GGCGGUAGAGGAGUAGAUGGU&UCAAUCUAUUUCUUUAUCUCC	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN5631_c0_g1_3964_TPlot.pdf
TRINITY_DN56331_c0_g1:419	si_a410	TRINITY_DN56331_c0_g1	408	428	419	-17.80	-11.60	0.651685393258427	9.5	2-15,427-414	1-1,428-428[UP5];16-21,413-408[UP3]	......((((((((((((((.&.))))))))))))))......	ACAAAAUGAAUAUAAACGAGU&UUUUGUUUAUAUUUAAAUAAA	2	0.99999999997579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN56331_c0_g1_419_TPlot.pdf
TRINITY_DN5635_c0_g1:1413	si_a319	TRINITY_DN5635_c0_g1	1401	1422	1413	-22.40	-14.70	0.65625	9.5	5-16,1418-1407;17-20,1405-1402	1-4,1422-1419[UP5];x-x,1406-1406[BULt];21-21,1401-1401[UP3]	.((((.((((((((((((....&....))))))))))))-)))).	CAUAACAAGAAUCAUGGACUGC&UUUAUCCAUGAUUUUU-UUAUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5635_c0_g1_1413_TPlot.pdf
TRINITY_DN5636_c0_g1:1286	si_s260	TRINITY_DN5636_c0_g1	1274	1295	1286	-24.10	-17.90	0.742738589211618	5	1-11,1295-1285;12-19,1283-1276	x-x,1284-1284[BULt];20-21,1275-1274[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	UUUUUUUUUGCAGUAAUAUGUC&GAUAUAUUACU-CAAAAAAAUC	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN5636_c0_g1_1286_TPlot.pdf
TRINITY_DN5636_c0_g1:1287	si_s259	TRINITY_DN5636_c0_g1	1275	1296	1287	-23.60	-18.20	0.771186440677966	5	2-12,1295-1285;13-20,1283-1276	1-1,1296-1296[UP5];x-x,1284-1284[BULt];21-21,1275-1275[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	UUUUUUUUGCAGUAAUAUGUCC&CGAUAUAUUACU-CAAAAAAAU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s259_TRINITY_DN5636_c0_g1_1287_TPlot.pdf
TRINITY_DN5638_c0_g1:3939	si_s103	TRINITY_DN5638_c0_g1	3928	3948	3939	-34.10	-22.20	0.651026392961877	10	1-10,3948-3939;12-14,3937-3935	11-11,3938-3938[SIL];15-21,3934-3928[UP3]	.......(((.((((((((((&)))))))))).))).......	UCCAGACUCCUAUCCGGAGCG&CGCUUCGGAUUGGAAAAUAGA	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN5638_c0_g1_3939_TPlot.pdf
TRINITY_DN5638_c0_g1:4374	si_s699	TRINITY_DN5638_c0_g1	4363	4383	4374	-28.60	-18.80	0.657342657342657	6	1-15,4383-4369;17-20,4367-4364	16-16,4368-4368[SIL];21-21,4363-4363[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	UUUCGGUGAUAAAUUGAUUGA&UUAGUCGAUUUAUUAGUGAAC	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN5638_c0_g1_4374_TPlot.pdf
TRINITY_DN5638_c0_g1:4545	si_s10	TRINITY_DN5638_c0_g1	4534	4554	4545	-23.80	-16.40	0.689075630252101	7	2-16,4553-4539	1-1,4554-4554[UP5];17-21,4538-4534[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUCUGAUAGUAAUAAUGAGUU&UACUUAUUAUUACUAUAUUGA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN5638_c0_g1_4545_TPlot.pdf
TRINITY_DN5638_c0_g1:4546	si_s9	TRINITY_DN5638_c0_g1	4535	4555	4546	-22.90	-16.40	0.716157205240175	8	3-17,4553-4539	1-2,4555-4554[UP5];18-21,4538-4535[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCUGAUAGUAAUAAUGAGUUG&UUACUUAUUAUUACUAUAUUG	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN5638_c0_g1_4546_TPlot.pdf
TRINITY_DN5638_c0_g1:4549	si_s6	TRINITY_DN5638_c0_g1	4538	4558	4549	-21.70	-16.40	0.755760368663594	11	6-20,4553-4539	1-5,4558-4554[UP5];21-21,4538-4538[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAUAGUAAUAAUGAGUUGAGA&AUAUUACUUAUUAUUACUAUA	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN5638_c0_g1_4549_TPlot.pdf
TRINITY_DN563_c0_g1:570	si_a408	TRINITY_DN563_c0_g1	552	579	570	-20.10	-13.20	0.656716417910448	20	1-11,579-569;12-20,561-553	x-x,568-562[BULt];21-21,552-552[UP3]	.(((((((((.......(((((((((((&)))))))))))-------))))))))).	GAUUUGAGUAAUCUCUAUGAACAGGGCA&UGUUUUGUUUA-------UAUUUAAAUA	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN563_c0_g1_570_TPlot.pdf
TRINITY_DN5640_c0_g1:1771	si_s74	TRINITY_DN5640_c0_g1	1756	1780	1771	-25.00	-18.00	0.72	9	1-13,1780-1768;14-19,1763-1758	x-x,1767-1764[BULt];20-21,1757-1756[UP3]	..((((((....(((((((((((((&)))))))))))))----))))))..	GCGAGGAAAAAAGGAGAAAAGAUAG&CUAUUUUUUUUCU----UUCCUUUC	2	0.999999591734411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5640_c0_g1_1771_TPlot.pdf
TRINITY_DN5640_c0_g1:1772	si_s73	TRINITY_DN5640_c0_g1	1757	1781	1772	-24.00	-19.60	0.816666666666667	8	1-14,1781-1768;15-20,1763-1758	x-x,1767-1764[BULt];21-21,1757-1757[UP3]	.((((((....((((((((((((((&))))))))))))))----)))))).	CGAGGAAAAAAGGAGAAAAGAUAGA&UCUAUUUUUUUUCU----UUCCUUU	2	0.941441084787653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5640_c0_g1_1772_TPlot.pdf
TRINITY_DN5640_c0_g1:1775	si_s70	TRINITY_DN5640_c0_g1	1760	1784	1775	-25.80	-18.00	0.697674418604651	9	3-17,1782-1768;18-21,1763-1760	1-2,1784-1783[UP5];x-x,1767-1764[BULt]	((((....(((((((((((((((..&..)))))))))))))))----))))	GGAAAAAAGGAGAAAAGAUAGAAUU&ACUUCUAUUUUUUUUCU----UUCC	2	0.999999979409245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5640_c0_g1_1775_TPlot.pdf
TRINITY_DN5640_c0_g1:1776	si_s69	TRINITY_DN5640_c0_g1	1765	1785	1776	-23.40	-16.70	0.713675213675214	8	4-20,1782-1766	1-3,1785-1783[UP5];21-21,1765-1765[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGGAGAAAAGAUAGAAUUG&AACUUCUAUUUUUUUUCUUUC	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5640_c0_g1_1776_TPlot.pdf
TRINITY_DN5640_c0_g1:1777	si_s68	TRINITY_DN5640_c0_g1	1766	1785	1777	-23.10	-18.10	0.783549783549784	4	1-3,1785-1783;5-21,1782-1766	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	AAGGAGAAAAGAUAGAA-UUG&CAACUUCUAUUUUUUUUCUUU	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5640_c0_g1_1777_TPlot.pdf
TRINITY_DN5640_c0_g1:1778	si_s67	TRINITY_DN5640_c0_g1	1767	1786	1778	-25.60	-17.20	0.671875	5	2-4,1785-1783;6-21,1782-1767	1-1,1786-1786[UP5];5-5,x-x[BULq]	((((((((((((((((-(((.&.))).))))))))))))))))	AGGAGAAAAGAUAGAA-UUGG&GCAACUUCUAUUUUUUUUCUU	4	0.99999999996619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN5640_c0_g1_1778_TPlot.pdf
TRINITY_DN5646_c0_g1:447	si_a469	TRINITY_DN5646_c0_g1	436	456	447	-21.10	-14.10	0.66824644549763	12.5	5-19,452-438	1-4,456-453[UP5];20-21,437-436[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAACGGUGGUUACAUGAAAU&AUAAUAUGUAAUUAUUGUUAU	2	0.998600396901634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN5646_c0_g1_447_TPlot.pdf
TRINITY_DN5654_c0_g1:95	si_s573	TRINITY_DN5654_c0_g1	84	103	95	-28.40	-18.60	0.654929577464789	5.5	1-5,103-99;7-19,98-86	6-6,x-x[BULq];20-21,85-84[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	CCAUUUUUUUGUUCC-UGUCU&GGACAAGGAAUAAAAAAAUCA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s573_TRINITY_DN5654_c0_g1_95_TPlot.pdf
TRINITY_DN565_c0_g1:2393	si_a463	TRINITY_DN565_c0_g1	2382	2402	2393	-19.70	-13.00	0.65989847715736	6.5	2-16,2401-2387	1-1,2402-2402[UP5];17-21,2386-2382[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAUAUAUAUAUUAUAUAUAC&UUAUAUAUAAUAUGUAAUUAU	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN565_c0_g1_2393_TPlot.pdf
TRINITY_DN565_c0_g1:2396	si_a460	TRINITY_DN565_c0_g1	2385	2404	2396	-21.60	-14.50	0.671296296296296	4.5	1-4,2404-2401;6-19,2400-2387	5-5,x-x[BULq];20-21,2386-2385[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	UAUAUAUAUUAUAUAU-ACAA&UUGUUAUAUAUAAUAUGUAAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN565_c0_g1_2396_TPlot.pdf
TRINITY_DN565_c0_g1:363	si_a288	TRINITY_DN565_c0_g1	352	372	363	-28.20	-19.90	0.705673758865248	6	2-19,371-354	1-1,372-372[UP5];20-21,353-352[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GAUUUUUUAAAUUCGAGCGGC&AUCGCUUGGAUUUAAAAAAGA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN565_c0_g1_363_TPlot.pdf
TRINITY_DN56612_c0_g1:397	si_s39	TRINITY_DN56612_c0_g1	386	406	397	-22.30	-16.70	0.748878923766816	6	1-11,406-396;14-20,393-387	12-13,395-394[SIL];21-21,386-386[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	UAAUCCAAAGGUUGAAGAUUU&AAAUCUUUAAUAAUUGGAUUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN56612_c0_g1_397_TPlot.pdf
TRINITY_DN5662_c0_g2:258	si_a117	TRINITY_DN5662_c0_g2	247	267	258	-31.00	-21.00	0.67741935483871	8.5	3-3,265-265;5-20,263-248	1-2,267-266[UP5];4-4,264-264[SIL];21-21,247-247[UP3]	.((((((((((((((((.(..&..).)))))))))))))))).	CUGUUGUAGAACAAGUUGGAG&UACGAGCUUGUUUUAUAGCAA	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN5662_c0_g2_258_TPlot.pdf
TRINITY_DN5662_c0_g2:259	si_a116	TRINITY_DN5662_c0_g2	248	268	259	-31.10	-20.70	0.665594855305466	9.5	4-4,265-265;6-21,263-248	1-3,268-266[UP5];5-5,264-264[SIL]	((((((((((((((((.(...&...).))))))))))))))))	UGUUGUAGAACAAGUUGGAGA&AUACGAGCUUGUUUUAUAGCA	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN5662_c0_g2_259_TPlot.pdf
TRINITY_DN5662_c0_g2:377	si_s704	TRINITY_DN5662_c0_g2	365	386	377	-32.80	-21.70	0.661585365853659	7	1-11,386-376;12-19,374-367	x-x,375-375[BULt];20-21,366-365[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AUCUUGUUUACCUGAUGAAUCG&CGAUUUAUUAG-UGAACAGGGA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s704_TRINITY_DN5662_c0_g2_377_TPlot.pdf
TRINITY_DN5662_c0_g2:378	si_s703	TRINITY_DN5662_c0_g2	366	387	378	-32.80	-23.30	0.710365853658537	6	1-12,387-376;13-20,374-367	x-x,375-375[BULt];21-21,366-366[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	UCUUGUUUACCUGAUGAAUCGA&UCGAUUUAUUAG-UGAACAGGG	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s703_TRINITY_DN5662_c0_g2_378_TPlot.pdf
TRINITY_DN5662_c0_g2:379	si_s702	TRINITY_DN5662_c0_g2	367	388	379	-32.20	-22.30	0.692546583850932	5	2-13,387-376;14-21,374-367	1-1,388-388[UP5];x-x,375-375[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	CUUGUUUACCUGAUGAAUCGAA&GUCGAUUUAUUAG-UGAACAGG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s702_TRINITY_DN5662_c0_g2_379_TPlot.pdf
TRINITY_DN5662_c0_g2:380	si_s701	TRINITY_DN5662_c0_g2	368	389	380	-30.50	-19.90	0.652459016393443	7	3-14,387-376;15-21,374-368	1-2,389-388[UP5];x-x,375-375[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	UUGUUUACCUGAUGAAUCGAAG&AGUCGAUUUAUUAG-UGAACAG	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN5662_c0_g2_380_TPlot.pdf
TRINITY_DN5662_c0_g2:381	si_s700	TRINITY_DN5662_c0_g2	369	390	381	-29.20	-19.30	0.660958904109589	8	4-15,387-376;16-21,374-369	1-3,390-388[UP5];x-x,375-375[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	UGUUUACCUGAUGAAUCGAAGG&UAGUCGAUUUAUUAG-UGAACA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN5662_c0_g2_381_TPlot.pdf
TRINITY_DN5663_c0_g1:601	si_s872	TRINITY_DN5663_c0_g1	590	610	601	-30.70	-21.40	0.697068403908795	6	2-12,609-599;15-19,596-592	1-1,610-610[UP5];13-14,598-597[SIL];20-21,591-590[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	AGUUUUACCUCUGAGACCGGC&ACCGGUCUUAGAACUAAAAAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN5663_c0_g1_601_TPlot.pdf
TRINITY_DN5665_c0_g4:1451	si_a759	TRINITY_DN5665_c0_g4	1438	1460	1451	-32.60	-25.40	0.779141104294478	6	1-14,1460-1447;15-17,1444-1442;19-21,1440-1438	x-x,1446-1445[BULt];18-18,1441-1441[SIL]	(((.(((..((((((((((((((&))))))))))))))--))).)))	UCACUCAUAAAAGCCCGGAGGAG&CUCCUUUGGGUUUU--UGAUUGA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN5665_c0_g4_1451_TPlot.pdf
TRINITY_DN5665_c0_g4:1453	si_a757	TRINITY_DN5665_c0_g4	1442	1462	1453	-33.10	-28.00	0.845921450151057	6	1-18,1462-1445	19-21,1444-1442[UP3]	...((((((((((((((((((&))))))))))))))))))...	UCAUAAAAGCCCGGAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5665_c0_g4_1453_TPlot.pdf
TRINITY_DN56666_c0_g1:131	si_a448	TRINITY_DN56666_c0_g1	120	139	131	-25.50	-17.00	0.666666666666667	7.5	2-3,138-137;5-19,136-122	1-1,139-139[UP5];4-4,x-x[BULq];20-21,121-120[UP3]	..(((((((((((((((-((.&.)).)))))))))))))))..	AAGUGAUAACGAUUAUC-CAG&AUGAGAUAAUUGUUGUUAUAU	0	0.18585930176497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN56666_c0_g1_131_TPlot.pdf
TRINITY_DN56666_c0_g1:132	si_a447	TRINITY_DN56666_c0_g1	121	140	132	-25.70	-17.00	0.66147859922179	8.5	3-4,138-137;6-20,136-122	1-2,140-139[UP5];5-5,x-x[BULq];21-21,121-121[UP3]	.(((((((((((((((-((..&..)).))))))))))))))).	AGUGAUAACGAUUAUC-CAGA&UAUGAGAUAAUUGUUGUUAUA	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN56666_c0_g1_132_TPlot.pdf
TRINITY_DN5666_c0_g1:1477	si_s512	TRINITY_DN5666_c0_g1	1468	1486	1477	-24.80	-17.80	0.717741935483871	6.5	2-15,1485-1472;18-21,1471-1468	1-1,1486-1486[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	UCGA--UGAGAAUGUGGGAUC&AAUUCUAUAUUCUUAAUUCGA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN5666_c0_g1_1477_TPlot.pdf
TRINITY_DN5666_c0_g1:1519	si_a563	TRINITY_DN5666_c0_g1	1509	1528	1519	-37.20	-24.90	0.669354838709677	9.5	2-11,1527-1518;15-19,1515-1511	1-1,1528-1528[UP5];12-14,1517-1516[AILq];20-21,1510-1509[UP3]	..(((((..-((((((((((.&.))))))))))...)))))..	GCUGCGAGA-GCGGGGAGGUU&UAUCUCCCCGUGAAUCGUAUG	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a563_TRINITY_DN5666_c0_g1_1519_TPlot.pdf
TRINITY_DN566_c0_g1:12076	si_s886	TRINITY_DN566_c0_g1	12064	12085	12076	-26.50	-18.00	0.679245283018868	6	3-14,12083-12072;16-21,12069-12064	1-2,12085-12084[UP5];15-15,12071-12070[AILt]	((((((..((((((((((((..&..))))))))))))-.))))))	GAGAAACACCUGUUUAUUUUGA&UAAAAAUAAAUAGG-CUUUCUC	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN566_c0_g1_12076_TPlot.pdf
TRINITY_DN566_c0_g1:1494	si_s85	TRINITY_DN566_c0_g1	1468	1503	1494	-33.80	-22.10	0.653846153846154	17.5	2-15,1502-1489;16-21,1473-1468	1-1,1503-1503[UP5];x-x,1488-1474[BULt]	((((((...............((((((((((((((.&.))))))))))))))---------------))))))	GCGAAGUAAAUAAAUUGAAAAAGGAAGAGAGGAAAA&CUUUCCUUUCUUCUU---------------CUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN566_c0_g1_1494_TPlot.pdf
TRINITY_DN566_c0_g1:1499	si_s80	TRINITY_DN566_c0_g1	1488	1513	1499	-28.20	-20.70	0.734042553191489	14	1-7,1513-1507;8-20,1501-1489	x-x,1506-1502[BULt];21-21,1488-1488[UP3]	.(((((((((((((.....(((((((&)))))))-----))))))))))))).	AAGGAAGAGAGGAAAAAAUGGAAAGA&UUUUUCU-----UUCCUUUCUUCUUC	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN566_c0_g1_1499_TPlot.pdf
TRINITY_DN566_c0_g1:1500	si_s79	TRINITY_DN566_c0_g1	1489	1514	1500	-26.20	-21.40	0.816793893129771	13	1-8,1514-1507;9-21,1501-1489	x-x,1506-1502[BULt]	(((((((((((((.....((((((((&))))))))-----)))))))))))))	AGGAAGAGAGGAAAAAAUGGAAAGAA&UUUUUUCU-----UUCCUUUCUUCUU	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN566_c0_g1_1500_TPlot.pdf
TRINITY_DN566_c0_g1:1501	si_s78	TRINITY_DN566_c0_g1	1490	1515	1501	-26.20	-20.70	0.790076335877863	14	2-9,1514-1507;10-21,1501-1490	1-1,1515-1515[UP5];x-x,1506-1502[BULt]	((((((((((((.....((((((((.&.))))))))-----))))))))))))	GGAAGAGAGGAAAAAAUGGAAAGAAC&UUUUUUUCU-----UUCCUUUCUUCU	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN566_c0_g1_1501_TPlot.pdf
TRINITY_DN566_c0_g1:16709	si_a866	TRINITY_DN566_c0_g1	16698	16721	16709	-23.30	-16.22	0.696137339055794	12.5	1-8,16721-16714;11-21,16708-16698	9-10,16713-16709[AILt]	(((((((((((.....((((((((&))))))))---..)))))))))))	UAGCUAGAUCUAUGGGAAUGAUUG&CAAUUAUU---AAAGAUUUAGUUG	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN566_c0_g1_16709_TPlot.pdf
TRINITY_DN566_c0_g1:16982	si_a20	TRINITY_DN566_c0_g1	16971	16991	16982	-26.70	-17.80	0.666666666666667	8.5	2-3,16990-16989;5-20,16987-16972	1-1,16991-16991[UP5];4-4,16988-16988[SIL];21-21,16971-16971[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	CAGGGCUGAAAAUGGGUUGGA&GCCUAUUUAUUUUUAGUUCUA	2	0.999845379205724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN566_c0_g1_16982_TPlot.pdf
TRINITY_DN566_c0_g1:16994	si_a547	TRINITY_DN566_c0_g1	16984	17003	16994	-26.90	-18.50	0.687732342007435	7	1-15,17003-16989;18-21,16987-16984	16-17,16988-16988[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	GGGUU-GGAAAUGGGUUGGAU&GUUCAAUCUAUUUCUUUAUCU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN566_c0_g1_16994_TPlot.pdf
TRINITY_DN566_c0_g1:21835	si_a320	TRINITY_DN566_c0_g1	21824	21844	21835	-24.40	-16.00	0.655737704918033	8	2-9,21843-21836;11-20,21834-21825	1-1,21844-21844[UP5];10-10,21835-21835[SIL];21-21,21824-21824[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	CAAUGAAAGAAACGUGGGUGC&UUAUCCAUGAUUUUUUUAUUC	4	0.999999997310997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN566_c0_g1_21835_TPlot.pdf
TRINITY_DN566_c0_g1:21836	si_a319	TRINITY_DN566_c0_g1	21825	21845	21836	-22.40	-16.00	0.714285714285714	9	3-10,21843-21836;12-21,21834-21825	1-2,21845-21844[UP5];11-11,21835-21835[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AAUGAAAGAAACGUGGGUGCA&UUUAUCCAUGAUUUUUUUAUU	3	0.999998686930523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN566_c0_g1_21836_TPlot.pdf
TRINITY_DN566_c0_g1:22649	si_s255	TRINITY_DN566_c0_g1	22637	22658	22649	-29.40	-20.90	0.710884353741497	10	1-10,22658-22649;12-17,22646-22641	11-11,22648-22647[AILt];18-21,22640-22637[UP3]	....((((((..((((((((((&))))))))))-.))))))....	AGGAGGGUGAGAAUAUCGGGGA&UUCCCGAUAU-AUUACUCAAAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN566_c0_g1_22649_TPlot.pdf
TRINITY_DN566_c0_g1:22651	si_s253	TRINITY_DN566_c0_g1	22639	22660	22651	-29.50	-21.80	0.738983050847458	8	2-12,22659-22649;14-19,22646-22641	1-1,22660-22660[UP5];13-13,22648-22647[AILt];20-21,22640-22639[UP3]	..((((((..(((((((((((.&.)))))))))))-.))))))..	GAGGGUGAGAAUAUCGGGGAAA&AUUUCCCGAUAU-AUUACUCAA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN566_c0_g1_22651_TPlot.pdf
TRINITY_DN566_c0_g1:23244	si_s511	TRINITY_DN566_c0_g1	23233	23253	23244	-25.50	-16.96	0.665098039215686	10.5	1-7,23253-23247;12-20,23242-23234	8-11,23246-23243[SIL];21-21,23233-23233[UP3]	.(((((((((....(((((((&)))))))....))))))))).	GGAAUUGAGAUCCCGGAAUUG&CAAUUCUAUAUUCUUAAUUCG	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN566_c0_g1_23244_TPlot.pdf
TRINITY_DN566_c0_g1:23245	si_s510	TRINITY_DN566_c0_g1	23234	23254	23245	-24.80	-16.36	0.659677419354839	10.5	2-8,23253-23247;13-21,23242-23234	1-1,23254-23254[UP5];9-12,23246-23243[SIL]	(((((((((....(((((((.&.)))))))....)))))))))	GAAUUGAGAUCCCGGAAUUGA&ACAAUUCUAUAUUCUUAAUUC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN566_c0_g1_23245_TPlot.pdf
TRINITY_DN566_c0_g1:4310	si_s499	TRINITY_DN566_c0_g1	4300	4319	4310	-22.60	-14.70	0.650442477876106	5.5	1-13,4319-4307;16-19,4305-4302	14-15,4306-4306[AILq];20-21,4301-4300[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	UCGGAAA-GUUUUGUUUGUAU&AUAUAAACAAAACAAUUCUAU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN566_c0_g1_4310_TPlot.pdf
TRINITY_DN566_c0_g1:4311	si_s498	TRINITY_DN566_c0_g1	4301	4320	4311	-22.40	-15.00	0.669642857142857	5.5	2-14,4319-4307;17-20,4305-4302	1-1,4320-4320[UP5];15-16,4306-4306[AILq];21-21,4301-4301[UP3]	.((((.-(((((((((((((.&.)))))))))))))..)))).	CGGAAA-GUUUUGUUUGUAUG&AAUAUAAACAAAACAAUUCUA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN566_c0_g1_4311_TPlot.pdf
TRINITY_DN566_c0_g1:4459	si_s75	TRINITY_DN566_c0_g1	4449	4468	4459	-24.00	-16.40	0.683333333333333	9	3-16,4466-4453;19-21,4451-4449	1-2,4468-4467[UP5];17-18,4452-4452[AILq]	(((.-((((((((((((((..&..))))))))))))))..)))	AGAU-GGAAGGAGAAGAAGCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN566_c0_g1_4459_TPlot.pdf
TRINITY_DN566_c0_g1:4461	si_s73	TRINITY_DN566_c0_g1	4450	4470	4461	-24.00	-17.70	0.7375	8.5	1-3,4470-4468;5-18,4466-4453	4-4,4467-4467[SIL];19-21,4452-4450[UP3]	...((((((((((((((.(((&))).))))))))))))))...	GAUGGAAGGAGAAGAAGCAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999963345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN566_c0_g1_4461_TPlot.pdf
TRINITY_DN566_c0_g1:4462	si_s72	TRINITY_DN566_c0_g1	4451	4471	4462	-24.10	-17.90	0.742738589211618	8.5	2-4,4470-4468;6-19,4466-4453	1-1,4471-4471[UP5];5-5,4467-4467[SIL];20-21,4452-4451[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AUGGAAGGAGAAGAAGCAGAU&UUCUAUUUUUUUUCUUUCCUU	2	0.999996115805695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN566_c0_g1_4462_TPlot.pdf
TRINITY_DN566_c0_g1:5118	si_s82	TRINITY_DN566_c0_g1	5103	5127	5118	-28.90	-19.50	0.674740484429066	13	2-5,5126-5123;7-11,5121-5117;12-21,5112-5103	1-1,5127-5127[UP5];6-6,5122-5122[SIL];x-x,5116-5113[BULt]	((((((((((....(((((.((((.&.)))).)))))----))))))))))	AAGAAGAAGAAAUCAAGGGCGGAAG&UUUCUUUCCUU----UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN566_c0_g1_5118_TPlot.pdf
TRINITY_DN566_c0_g1:660	si_a712	TRINITY_DN566_c0_g1	649	669	660	-28.20	-19.60	0.695035460992908	6.5	2-5,668-665;7-16,663-654;19-21,651-649	1-1,669-669[UP5];6-6,664-664[SIL];17-18,653-652[SIL]	(((..((((((((((.((((.&.)))).))))))))))..)))	GAGGAACGGUUAUUUCGGAGC&AUUCCAAAAUAAUCGUUACUC	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN566_c0_g1_660_TPlot.pdf
TRINITY_DN566_c0_g1:9904	si_s8	TRINITY_DN566_c0_g1	9893	9913	9904	-21.30	-14.78	0.693896713615023	11	2-9,9912-9905;13-21,9901-9893	1-1,9913-9913[UP5];10-12,9904-9902[SIL]	(((((((((...((((((((.&.))))))))...)))))))))	GAUGUAGUAUGUGUGGGUAAG&AUUACUUAUUAUUACUAUAUU	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN566_c0_g1_9904_TPlot.pdf
TRINITY_DN566_c0_g3:1149	si_a639	TRINITY_DN566_c0_g3	1139	1158	1149	-23.60	-16.10	0.682203389830509	5.5	2-11,1157-1148;13-21,1147-1139	1-1,1158-1158[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AUGUAUUAC-CAAAAAAGUUA&CGAUUUUUUUGAGUAAUAUAU	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN566_c0_g3_1149_TPlot.pdf
TRINITY_DN566_c0_g3:561	si_s482	TRINITY_DN566_c0_g3	550	569	561	-21.20	-15.00	0.707547169811321	7.5	1-8,569-562;11-20,560-551	9-10,561-561[AILq];21-21,550-550[UP3]	.((((((((((.-((((((((&))))))))..)))))))))).	UUAUUUAGAUAU-UGUAGGGU&AUCCUAUAUUUAUUUAAAUAU	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN566_c0_g3_561_TPlot.pdf
TRINITY_DN56722_c0_g1:127	si_s86	TRINITY_DN56722_c0_g1	116	136	127	-32.90	-22.70	0.689969604863222	9.5	1-5,136-132;8-18,129-119	6-7,131-130[SIL];19-21,118-116[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	CAAGAAGGAGGAGAUUGGAGA&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999999955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN56722_c0_g1_127_TPlot.pdf
TRINITY_DN56729_c0_g2:165	si_s70	TRINITY_DN56729_c0_g2	154	175	165	-25.80	-18.40	0.713178294573643	8.5	2-6,174-170;8-20,167-155	1-1,175-175[UP5];7-7,169-168[AILt];21-21,154-154[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	UGAGAGAAAAAGAAGAGGAAGG&ACUUCU-AUUUUUUUUCUUUCC	4	0.99999999839502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN56729_c0_g2_165_TPlot.pdf
TRINITY_DN5673_c0_g1:1275	si_a66	TRINITY_DN5673_c0_g1	1262	1284	1275	-26.70	-17.50	0.655430711610487	11.5	1-12,1284-1273;13-16,1270-1267	x-x,1272-1271[BULt];17-21,1266-1262[UP3]	.....((((..((((((((((((&))))))))))))--)))).....	UUUGUCAGUGCUUGAAAGGGGCG&CGCUUCUUUCAA--AUUGUUUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5673_c0_g1_1275_TPlot.pdf
TRINITY_DN5673_c0_g1:1297	si_a709	TRINITY_DN5673_c0_g1	1280	1306	1297	-26.60	-17.44	0.655639097744361	20.5	1-10,1306-1297;13-20,1288-1281	11-12,1296-1289[AILt];21-21,1280-1280[UP3]	.((((((((........((((((((((&))))))))))------..)))))))).	GGGCGGUUAGUGAAAUGUUGGGGUGUA&UACAUUCCAA------AAUAAUCGUUA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN5673_c0_g1_1297_TPlot.pdf
TRINITY_DN5673_c0_g1:1314	si_s312	TRINITY_DN5673_c0_g1	1303	1323	1314	-29.00	-19.00	0.655172413793103	7.5	1-14,1323-1310	15-21,1309-1303[UP3]	.......((((((((((((((&)))))))))))))).......	UGUAGUAGAGGACAGAAUUUU&AAAAUUCUGUCCUUCUUGUUA	3	0.99999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN5673_c0_g1_1314_TPlot.pdf
TRINITY_DN5673_c0_g1:1319	si_s307	TRINITY_DN5673_c0_g1	1308	1327	1319	-32.90	-21.50	0.653495440729483	5.5	1-4,1327-1324;6-19,1323-1310	5-5,x-x[BULq];20-21,1309-1308[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	UAGAGGACAGAAUUUU-GUAA&UUGCGAAAAUUCUGUCCUUCU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN5673_c0_g1_1319_TPlot.pdf
TRINITY_DN5673_c0_g1:1320	si_s306	TRINITY_DN5673_c0_g1	1309	1328	1320	-32.30	-22.50	0.696594427244582	4.5	1-5,1328-1324;7-20,1323-1310	6-6,x-x[BULq];21-21,1309-1309[UP3]	.((((((((((((((-(((((&))))).)))))))))))))).	AGAGGACAGAAUUUU-GUAAU&AUUGCGAAAAUUCUGUCCUUC	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN5673_c0_g1_1320_TPlot.pdf
TRINITY_DN5673_c0_g1:1321	si_s305	TRINITY_DN5673_c0_g1	1310	1329	1321	-30.30	-23.50	0.775577557755776	3.5	1-6,1329-1324;8-21,1323-1310	7-7,x-x[BULq]	((((((((((((((-((((((&)))))).))))))))))))))	GAGGACAGAAUUUU-GUAAUU&AAUUGCGAAAAUUCUGUCCUU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN5673_c0_g1_1321_TPlot.pdf
TRINITY_DN5673_c0_g1:1322	si_s304	TRINITY_DN5673_c0_g1	1311	1330	1322	-32.30	-22.70	0.702786377708978	4	2-7,1329-1324;9-21,1323-1311	1-1,1330-1330[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	AGGACAGAAUUUU-GUAAUUA&GAAUUGCGAAAAUUCUGUCCU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN5673_c0_g1_1322_TPlot.pdf
TRINITY_DN5673_c0_g1:918	si_a784	TRINITY_DN5673_c0_g1	907	927	918	-24.70	-17.80	0.720647773279352	9	2-9,926-919;12-19,916-909	1-1,927-927[UP5];10-11,918-917[SIL];20-21,908-907[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	UUGGUAGAAAUCUAGGAGAGC&ACUCUUCUAUUUUUCUAUUUU	3	0.999997589863607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5673_c0_g1_918_TPlot.pdf
TRINITY_DN5674_c0_g1:119	si_s437	TRINITY_DN5674_c0_g1	108	128	119	-19.70	-13.90	0.705583756345178	11	4-17,125-112	1-3,128-126[UP5];18-21,111-108[UP3]	....((((((((((((((...&...))))))))))))))....	GAUAAUGUGAUAUGUGAUAUG&AUAAUUACAUAUUAUAUAUAA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN5674_c0_g1_119_TPlot.pdf
TRINITY_DN5674_c0_g1:120	si_s436	TRINITY_DN5674_c0_g1	109	129	120	-19.60	-13.90	0.709183673469388	12	5-18,125-112	1-4,129-126[UP5];19-21,111-109[UP3]	...((((((((((((((....&....))))))))))))))...	AUAAUGUGAUAUGUGAUAUGA&AAUAAUUACAUAUUAUAUAUA	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN5674_c0_g1_120_TPlot.pdf
TRINITY_DN5674_c0_g1:1550	si_s90	TRINITY_DN5674_c0_g1	1536	1559	1550	-35.30	-23.02	0.652124645892351	7.5	1-13,1559-1547;16-20,1541-1537	14-15,1546-1542[AILt];21-21,1536-1536[UP3]	.(((((.....(((((((((((((&)))))))))))))---..))))).	ACGAAGAUCUAGAGAGGAAGAAAG&CUUUCUUCUUCUU---CGCUUCGG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5674_c0_g1_1550_TPlot.pdf
TRINITY_DN5674_c0_g1:1556	si_s84	TRINITY_DN5674_c0_g1	1545	1564	1556	-32.30	-21.60	0.668730650154799	6	1-6,1564-1559;8-19,1558-1547	7-7,x-x[BULq];20-21,1546-1545[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	UAGAGAGGAAGAAA-GAGAGA&UCUUUCCUUUCUUCUUCUUCG	2	0.999999999995199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5674_c0_g1_1556_TPlot.pdf
TRINITY_DN5674_c0_g1:1557	si_s83	TRINITY_DN5674_c0_g1	1546	1565	1557	-30.90	-22.50	0.728155339805825	5	1-7,1565-1559;9-20,1558-1547	8-8,x-x[BULq];21-21,1546-1546[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	AGAGAGGAAGAAA-GAGAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999995968034304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5674_c0_g1_1557_TPlot.pdf
TRINITY_DN5674_c0_g1:1558	si_s82	TRINITY_DN5674_c0_g1	1547	1569	1558	-28.90	-22.60	0.782006920415225	7	1-5,1569-1565;6-8,1563-1561;9-21,1559-1547	x-x,1564-1564[BULt];x-x,1560-1560[BULt]	(((((((((((((.(((.(((((&)))))-)))-)))))))))))))	GAGAGGAAGAAAGAGAGAAGAGA&UUUCU-UUC-CUUUCUUCUUCUU	2	0.997889528026194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5674_c0_g1_1558_TPlot.pdf
TRINITY_DN5674_c0_g1:1561	si_s76	TRINITY_DN5674_c0_g1	1545	1570	1561	-23.60	-18.90	0.800847457627119	15.5	1-12,1570-1559;13-20,1553-1546	x-x,1558-1554[BULt];21-21,1545-1545[UP3]	.((((((((.....((((((((((((&))))))))))))-----)))))))).	UAGAGAGGAAGAAAGAGAGAAGAGAU&AUUUUUUUUCUU-----UCCUUUCUU	2	0.99986516281768	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5674_c0_g1_1561_TPlot.pdf
TRINITY_DN5674_c0_g1:1562	si_s75	TRINITY_DN5674_c0_g1	1546	1571	1562	-24.00	-20.00	0.833333333333333	9	1-13,1571-1559;14-21,1553-1546	x-x,1558-1554[BULt]	((((((((.....(((((((((((((&)))))))))))))-----))))))))	AGAGAGGAAGAAAGAGAGAAGAGAUA&UAUUUUUUUUCUU-----UCCUUUCU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5674_c0_g1_1562_TPlot.pdf
TRINITY_DN5674_c0_g1:1563	si_s74	TRINITY_DN5674_c0_g1	1547	1572	1563	-25.00	-19.00	0.76	10	2-14,1571-1559;15-21,1553-1547	1-1,1572-1572[UP5];x-x,1558-1554[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	GAGAGGAAGAAAGAGAGAAGAGAUAC&CUAUUUUUUUUCUU-----UCCUUUC	2	0.998600396901634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5674_c0_g1_1563_TPlot.pdf
TRINITY_DN5674_c0_g1:165	si_s550	TRINITY_DN5674_c0_g1	154	174	165	-20.30	-14.30	0.704433497536946	7.5	1-12,174-163;14-17,161-158	13-13,162-162[SIL];18-21,157-154[UP3]	....((((.((((((((((((&)))))))))))).))))....	GUUUUGUUCGUUCUGUUUUGA&UCAAAAUAGAAUUAAUAUUUU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN5674_c0_g1_165_TPlot.pdf
TRINITY_DN5674_c0_g1:166	si_s549	TRINITY_DN5674_c0_g1	155	175	166	-20.50	-14.30	0.697560975609756	7	2-13,174-163;15-18,161-158	1-1,175-175[UP5];14-14,162-162[SIL];19-21,157-155[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	UUUUGUUCGUUCUGUUUUGAA&AUCAAAAUAGAAUUAAUAUUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN5674_c0_g1_166_TPlot.pdf
TRINITY_DN5674_c0_g1:231	si_s352	TRINITY_DN5674_c0_g1	220	240	231	-27.20	-19.20	0.705882352941177	3.5	1-13,240-228;15-16,226-225;18-21,223-220	14-14,227-227[SIL];17-17,224-224[SIL]	((((.((.(((((((((((((&))))))))))))).)).))))	UUUAUUCAAUUUCUUUGUCUC&GAGAUAAAGAAAUAGAUUGAA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN5674_c0_g1_231_TPlot.pdf
TRINITY_DN5674_c0_g1:979	si_a555	TRINITY_DN5674_c0_g1	968	988	979	-33.70	-23.60	0.700296735905044	6.5	1-6,988-983;9-16,980-973;18-21,971-968	7-8,982-981[SIL];17-17,972-972[SIL]	((((.((((((((..((((((&))))))..)))))))).))))	UCACAGGGAGAUAUCGAGAUG&UAUUUCUUUAUCUCCCCGUGA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN5674_c0_g1_979_TPlot.pdf
TRINITY_DN5675_c0_g1:2277	si_a257	TRINITY_DN5675_c0_g1	2265	2288	2277	-38.20	-28.50	0.746073298429319	6.5	1-8,2288-2281;9-16,2278-2271;17-21,2269-2265	x-x,2280-2279[BULt];x-x,2270-2270[BULt]	(((((.((((((((..((((((((&))))))))--))))))))-)))))	GCGUUAUGCUCUCGUCGUACAAUC&GAUUGUAU--CGAGGGCA-AACGC	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a257_TRINITY_DN5675_c0_g1_2277_TPlot.pdf
TRINITY_DN5675_c0_g1:2783	si_a615	TRINITY_DN5675_c0_g1	2773	2792	2783	-35.50	-23.10	0.650704225352113	9	2-11,2791-2782;13-16,2781-2778	1-1,2792-2792[UP5];12-12,x-x[BULq];17-21,2777-2773[UP3]	.....((((-((((((((((.&.)))))))))).)))).....	CUCUCCGCC-AGUCGGUUGGC&UCCAAUCGACUAGGCGUAUUA	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a615_TRINITY_DN5675_c0_g1_2783_TPlot.pdf
TRINITY_DN5675_c0_g1:2784	si_a614	TRINITY_DN5675_c0_g1	2774	2793	2784	-35.20	-23.10	0.65625	9	3-12,2791-2782;14-17,2781-2778	1-2,2793-2792[UP5];13-13,x-x[BULq];18-21,2777-2774[UP3]	....((((-((((((((((..&..)))))))))).))))....	UCUCCGCC-AGUCGGUUGGCG&UUCCAAUCGACUAGGCGUAUU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a614_TRINITY_DN5675_c0_g1_2784_TPlot.pdf
TRINITY_DN5675_c0_g1:2789	si_s286	TRINITY_DN5675_c0_g1	2778	2797	2789	-35.20	-23.10	0.65625	6.5	1-8,2797-2790;10-19,2789-2780	9-9,x-x[BULq];20-21,2779-2778[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	CGCCAGUCGGUU-GGCGUAUU&AAUACGCCUAGUCGAUUGGAA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN5675_c0_g1_2789_TPlot.pdf
TRINITY_DN5675_c0_g1:2934	si_s774	TRINITY_DN5675_c0_g1	2923	2943	2934	-24.70	-16.30	0.659919028340081	14	4-16,2940-2928	1-3,2943-2941[UP5];17-21,2927-2923[UP3]	.....(((((((((((((...&...))))))))))))).....	CGAAAGUGGCAGUGGUGAAGA&UAAUUACUAUUGCUAUAAAAC	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN5675_c0_g1_2934_TPlot.pdf
TRINITY_DN5675_c0_g1:2935	si_s773	TRINITY_DN5675_c0_g1	2924	2944	2935	-23.10	-16.30	0.705627705627706	15	5-17,2940-2928	1-4,2944-2941[UP5];18-21,2927-2924[UP3]	....(((((((((((((....&....)))))))))))))....	GAAAGUGGCAGUGGUGAAGAU&UUAAUUACUAUUGCUAUAAAA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN5675_c0_g1_2935_TPlot.pdf
TRINITY_DN56781_c0_g1:612	si_a374	TRINITY_DN56781_c0_g1	601	621	612	-25.60	-17.30	0.67578125	11	6-20,616-602	1-5,621-617[UP5];21-21,601-601[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGUUCGAGAUCAUUUUAUACA&GAUCAAAAAUGAUUUCGAAUU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN56781_c0_g1_612_TPlot.pdf
TRINITY_DN56795_c0_g1:220	si_s49	TRINITY_DN56795_c0_g1	209	229	220	-29.30	-21.10	0.720136518771331	9.5	3-6,227-224;9-21,221-209	1-2,229-228[UP5];7-8,223-222[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	UGCUGACUUGGAAAACGAUAU&UAAUUGGAUUUCAAGUUAGCA	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN56795_c0_g1_220_TPlot.pdf
TRINITY_DN5679_c0_g2:850	si_s121	TRINITY_DN5679_c0_g2	839	859	850	-27.00	-17.78	0.658518518518519	9	1-5,859-855;9-18,851-842	6-8,854-852[SIL];19-21,841-839[UP3]	...((((((((((...(((((&)))))...))))))))))...	GACCAACUCUUCUUUCUUUCU&AGAAAAAUAGAAGAGUUGAAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN5679_c0_g2_850_TPlot.pdf
TRINITY_DN567_c0_g1:1045	si_a767	TRINITY_DN567_c0_g1	1034	1054	1045	-30.10	-20.30	0.674418604651163	7	1-13,1054-1042;15-17,1040-1038	14-14,1041-1041[SIL];18-21,1037-1034[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UAACUGACUCAAUCGAAGACC&GGUUUUUGAUUGAUUCAACUC	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN567_c0_g1_1045_TPlot.pdf
TRINITY_DN567_c0_g1:1047	si_a765	TRINITY_DN567_c0_g1	1036	1056	1047	-30.50	-20.30	0.665573770491803	8	3-15,1054-1042;17-19,1040-1038	1-2,1056-1055[UP5];16-16,1041-1041[SIL];20-21,1037-1036[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	ACUGACUCAAUCGAAGACCAA&UGGGUUUUUGAUUGAUUCAAC	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN567_c0_g1_1047_TPlot.pdf
TRINITY_DN567_c0_g1:1049	si_a763	TRINITY_DN567_c0_g1	1038	1058	1049	-28.80	-20.00	0.694444444444444	10	5-17,1054-1042;19-21,1040-1038	1-4,1058-1055[UP5];18-18,1041-1041[SIL]	(((.(((((((((((((....&....))))))))))))).)))	UGACUCAAUCGAAGACCAAGC&UUUGGGUUUUUGAUUGAUUCA	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN567_c0_g1_1049_TPlot.pdf
TRINITY_DN567_c0_g1:1563	si_a352	TRINITY_DN567_c0_g1	1552	1572	1563	-22.50	-16.20	0.72	6.5	2-17,1571-1556;19-20,1554-1553	1-1,1572-1572[UP5];18-18,1555-1555[SIL];21-21,1552-1552[UP3]	.((.((((((((((((((((.&.)))))))))))))))).)).	UAUGAAGAUGGAGUUAAUGUA&AAUAUUAAUUCUAUUUUGAUC	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN567_c0_g1_1563_TPlot.pdf
TRINITY_DN567_c0_g1:1564	si_a351	TRINITY_DN567_c0_g1	1553	1573	1564	-20.50	-16.20	0.790243902439024	7	3-18,1571-1556;20-21,1554-1553	1-2,1573-1572[UP5];19-19,1555-1555[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	AUGAAGAUGGAGUUAAUGUAA&AAAUAUUAAUUCUAUUUUGAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN567_c0_g1_1564_TPlot.pdf
TRINITY_DN567_c0_g1:527	si_s603	TRINITY_DN567_c0_g1	516	538	527	-27.20	-18.10	0.665441176470588	7.5	1-4,538-535;5-8,533-530;9-18,528-519	x-x,534-534[BULt];x-x,529-529[BULt];19-21,518-516[UP3]	...((((((((((.((((.((((&))))-))))-))))))))))...	AUAUAAAGAAGAUGUCGCUUUGG&CCAA-GCGA-AUCUUUUUUAAAU	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN567_c0_g1_527_TPlot.pdf
TRINITY_DN5680_c1_g1:1496	si_s8	TRINITY_DN5680_c1_g1	1485	1507	1496	-21.30	-15.70	0.737089201877934	7	3-8,1505-1500;9-21,1497-1485	1-2,1507-1506[UP5];x-x,1499-1498[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	AAUAUAGUAAUAAAUUAAGUAUU&AUUACUUA--UUAUUACUAUAUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN5680_c1_g1_1496_TPlot.pdf
TRINITY_DN5682_c0_g1:1353	si_s152	TRINITY_DN5682_c0_g1	1342	1361	1353	-42.00	-28.50	0.678571428571429	6	2-8,1360-1354;10-15,1353-1348;17-20,1346-1343	1-1,1361-1361[UP5];9-9,x-x[BULq];16-16,1347-1347[SIL];21-21,1342-1342[UP3]	.((((.((((((-(((((((.&.))))))).)))))).)))).	CGGCCUUGAAUC-CCUUUGGA&CCCAAAGGAGGUUCAUGGCCA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s152_TRINITY_DN5682_c0_g1_1353_TPlot.pdf
TRINITY_DN5682_c0_g1:1363	si_s601	TRINITY_DN5682_c0_g1	1352	1373	1363	-28.30	-19.00	0.671378091872792	9.5	1-7,1373-1367;8-14,1365-1359	x-x,1366-1366[BULt];15-21,1358-1352[UP3]	.......(((((((.(((((((&)))))))-))))))).......	UCCCUUUGGAUUCGUCUUGGAU&AUCCAAG-CGAAUCUUUUUUAA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN5682_c0_g1_1363_TPlot.pdf
TRINITY_DN5682_c0_g1:1367	si_s598	TRINITY_DN5682_c0_g1	1355	1376	1367	-28.20	-19.30	0.684397163120567	11.5	4-10,1373-1367;11-17,1365-1359	1-3,1376-1374[UP5];x-x,1366-1366[BULt];18-21,1358-1355[UP3]	....(((((((.(((((((...&...)))))))-)))))))....	CUUUGGAUUCGUCUUGGAUGGA&UAAAUCCAAG-CGAAUCUUUUU	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN5682_c0_g1_1367_TPlot.pdf
TRINITY_DN56850_c0_g1:331	si_s553	TRINITY_DN56850_c0_g1	320	341	331	-23.50	-15.90	0.676595744680851	8.5	1-4,341-338;6-20,335-321	5-5,337-336[AILt];21-21,320-320[UP3]	.(((((((((((((((..((((&))))-.))))))))))))))).	ACGAAAAUGUUGAUUUGGGUUU&AAAU-AGAAUUAAUAUUUUCGG	1	0.0492566749731151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN56850_c0_g1_331_TPlot.pdf
TRINITY_DN56850_c0_g1:332	si_s552	TRINITY_DN56850_c0_g1	321	342	332	-21.10	-15.60	0.739336492890995	8.5	2-5,341-338;7-21,335-321	1-1,342-342[UP5];6-6,337-336[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	CGAAAAUGUUGAUUUGGGUUUA&AAAAU-AGAAUUAAUAUUUUCG	1	0.0221725186932851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN56850_c0_g1_332_TPlot.pdf
TRINITY_DN5689_c0_g1:155	si_s79	TRINITY_DN5689_c0_g1	145	164	155	-26.20	-18.10	0.690839694656489	7	1-3,164-162;6-14,159-151;16-21,150-145	4-5,161-160[SIL];15-15,x-x[BULq]	((((((-(((((((((..(((&)))..))))))))).))))))	AGGAAG-AAGGAAAGAUCGAG&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5689_c0_g1_155_TPlot.pdf
TRINITY_DN5689_c0_g1:156	si_a787	TRINITY_DN5689_c0_g1	145	165	156	-26.30	-17.90	0.680608365019011	7	1-4,165-162;6-13,160-153;15-20,151-146	5-5,161-161[SIL];14-14,152-152[SIL];21-21,145-145[UP3]	.((((((.((((((((.((((&)))).)))))))).)))))).	AGGAAGAAGGAAAGAUCGAGG&CUUCUAUUUUUCUAUUUUCCA	0	0.442809022549361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN5689_c0_g1_156_TPlot.pdf
TRINITY_DN5689_c0_g1:157	si_a786	TRINITY_DN5689_c0_g1	146	166	157	-26.60	-17.40	0.654135338345865	7	2-5,165-162;7-14,160-153;16-21,151-146	1-1,166-166[UP5];6-6,161-161[SIL];15-15,152-152[SIL]	((((((.((((((((.((((.&.)))).)))))))).))))))	GGAAGAAGGAAAGAUCGAGGU&UCUUCUAUUUUUCUAUUUUCC	2	0.999999999813589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5689_c0_g1_157_TPlot.pdf
TRINITY_DN568_c0_g1:1803	si_a73	TRINITY_DN568_c0_g1	1792	1812	1803	-21.90	-14.40	0.657534246575343	7	1-4,1812-1809;6-16,1807-1797	5-5,1808-1808[SIL];17-21,1796-1792[UP3]	.....(((((((((((.((((&)))).))))))))))).....	GAAACUGAAAAACAAUCUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN568_c0_g1_1803_TPlot.pdf
TRINITY_DN568_c0_g1:34	si_s69	TRINITY_DN568_c0_g1	23	44	34	-23.40	-15.50	0.662393162393162	9.5	1-6,44-39;9-20,35-24	7-8,38-36[AILt];21-21,23-23[UP3]	.((((((((((((...((((((&))))))-..)))))))))))).	AAAAGAAGAAGAAGUUGAGGUU&AACUUC-UAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN568_c0_g1_34_TPlot.pdf
TRINITY_DN568_c0_g1:39	si_s83	TRINITY_DN568_c0_g1	27	48	39	-30.90	-22.80	0.737864077669903	9	1-4,48-45;7-10,42-39;12-21,36-27	5-6,44-43[SIL];11-11,38-37[AILt]	((((((((((..((((..((((&))))..))))-.))))))))))	GAAGAAGAAGUUGAGGUUAGAA&UUCUUUCCUU-UCUUCUUCUUC	2	0.99997118933767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN568_c0_g1_39_TPlot.pdf
TRINITY_DN56914_c0_g1:356	si_a123	TRINITY_DN56914_c0_g1	345	365	356	-26.60	-18.40	0.691729323308271	3	1-3,365-363;5-17,361-349;19-21,347-345	4-4,362-362[SIL];18-18,348-348[SIL]	(((.(((((((((((((.(((&))).))))))))))))).)))	UUAAUAUUGCUAUAAAAGAAG&CUUGUUUUAUAGCAAUAGUAA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN56914_c0_g1_356_TPlot.pdf
TRINITY_DN5691_c0_g1:860	si_a635	TRINITY_DN5691_c0_g1	849	869	860	-26.10	-17.10	0.655172413793103	7	1-14,869-856;16-17,854-853	15-15,855-855[SIL];18-21,852-849[UP3]	....((.((((((((((((((&)))))))))))))).))....	AAUCUUGGAGAAAAUCGACAU&AUGUCGAUUUUUUUGAGUAAU	4	0.9999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN5691_c0_g1_860_TPlot.pdf
TRINITY_DN5693_c0_g1:1244	si_s524	TRINITY_DN5693_c0_g1	1234	1253	1244	-23.90	-15.90	0.665271966527197	9.5	5-18,1249-1236;20-21,1235-1234	1-4,1253-1250[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	UC-AAGAUGAUUUCGGAGGAG&UUAAUUCGAAAUCAUUUUUGA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN5693_c0_g1_1244_TPlot.pdf
TRINITY_DN5693_c0_g1:4460	si_a407	TRINITY_DN5693_c0_g1	4449	4468	4460	-19.80	-12.90	0.651515151515151	10	2-6,4467-4463;8-18,4462-4452	1-1,4468-4468[UP5];7-7,x-x[BULq];19-21,4451-4449[UP3]	...(((((((((((-(((((.&.))))).)))))))))))...	UCAUGAGUAUGAGC-GAACAG&UUGUUUUGUUUAUAUUUAAAU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5693_c0_g1_4460_TPlot.pdf
TRINITY_DN5693_c0_g1:6388	si_s172	TRINITY_DN5693_c0_g1	6376	6401	6388	-40.30	-27.00	0.669975186104218	12.5	2-8,6400-6394;9-13,6389-6385;14-21,6383-6376	1-1,6401-6401[UP5];x-x,6393-6390[BULt];x-x,6384-6384[BULt]	((((((((.(((((....(((((((.&.)))))))----)))))-))))))))	UACUUGGGUCAUCUUCGAUUGCCCUC&AGGGGUAA----AGAUG-CCCGAGUA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s172_TRINITY_DN5693_c0_g1_6388_TPlot.pdf
TRINITY_DN5694_c0_g2:1274	si_s647	TRINITY_DN5694_c0_g2	1266	1284	1274	-41.20	-28.20	0.684466019417476	5.5	1-5,1284-1280;6-12,1278-1272;16-21,1271-1266	x-x,1279-1279[BULt];13-15,x-x[BULq]	((((((---(((((((.(((((&)))))-)))))))...))))))	CCCCGA---UAUCGAGUGGCAG&UUGCC-CUCGAUACAAUCGGGG	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s647_TRINITY_DN5694_c0_g2_1274_TPlot.pdf
TRINITY_DN5694_c0_g2:1575	si_s797	TRINITY_DN5694_c0_g2	1565	1582	1575	-30.00	-20.94	0.698	10.5	1-8,1582-1575;13-20,1573-1566	9-12,1574-1574[AILq];21-21,1565-1565[UP3]	.((((((((.---((((((((&))))))))....)))))))).	AGACGAAGAC---GUACGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN5694_c0_g2_1575_TPlot.pdf
TRINITY_DN5694_c0_g2:2136	si_a284	TRINITY_DN5694_c0_g2	2125	2145	2136	-28.30	-20.80	0.734982332155477	11.5	4-17,2142-2129	1-3,2145-2143[UP5];18-21,2128-2125[UP3]	....((((((((((((((...&...))))))))))))))....	CCGGAAGUCCAAGUGGUCGAG&AAAGAUCGCUUGGAUUUAAAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN5694_c0_g2_2136_TPlot.pdf
TRINITY_DN5694_c0_g2:2138	si_a282	TRINITY_DN5694_c0_g2	2127	2148	2138	-30.30	-21.42	0.706930693069307	12.5	1-2,2148-2147;6-19,2142-2129	3-5,2146-2143[AILt];20-21,2128-2127[UP3]	..((((((((((((((....((&))-...))))))))))))))..	GGAAGUCCAAGUGGUCGAGGUC&GA-AAAGAUCGCUUGGAUUUAA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN5694_c0_g2_2138_TPlot.pdf
TRINITY_DN5694_c0_g2:2198	si_a731	TRINITY_DN5694_c0_g2	2186	2207	2198	-44.00	-28.60	0.65	7.5	1-14,2207-2194;16-20,2191-2187	15-15,2193-2192[AILt];21-21,2186-2186[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	CCCGGGAAGUGGAGGUGCUCGA&UCGGGCAUCUUUAC-CCCUGGC	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a731_TRINITY_DN5694_c0_g2_2198_TPlot.pdf
TRINITY_DN5694_c0_g2:2199	si_a730	TRINITY_DN5694_c0_g2	2187	2208	2199	-43.20	-31.80	0.736111111111111	6	1-15,2208-2194;17-21,2191-2187	16-16,2193-2192[AILt]	(((((..(((((((((((((((&)))))))))))))))-.)))))	CCGGGAAGUGGAGGUGCUCGAG&CUCGGGCAUCUUUAC-CCCUGG	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a730_TRINITY_DN5694_c0_g2_2199_TPlot.pdf
TRINITY_DN5694_c0_g2:2200	si_a729	TRINITY_DN5694_c0_g2	2188	2209	2200	-41.60	-28.70	0.689903846153846	6.5	2-16,2208-2194;18-21,2191-2188	1-1,2209-2209[UP5];17-17,2193-2192[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	CGGGAAGUGGAGGUGCUCGAGG&ACUCGGGCAUCUUUAC-CCCUG	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a729_TRINITY_DN5694_c0_g2_2200_TPlot.pdf
TRINITY_DN5694_c0_g2:2201	si_a728	TRINITY_DN5694_c0_g2	2188	2210	2201	-40.30	-28.70	0.712158808933003	9	3-17,2208-2194;18-20,2191-2189	1-2,2210-2209[UP5];x-x,2193-2192[BULt];21-21,2188-2188[UP3]	.(((..(((((((((((((((..&..)))))))))))))))--))).	CGGGAAGUGGAGGUGCUCGAGGA&UACUCGGGCAUCUUUAC--CCCU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN5694_c0_g2_2201_TPlot.pdf
TRINITY_DN5694_c0_g2:2205	si_a724	TRINITY_DN5694_c0_g2	2194	2214	2205	-36.70	-24.50	0.667574931880109	13.5	7-21,2208-2194	1-6,2214-2209[UP5]	(((((((((((((((......&......)))))))))))))))	GUGGAGGUGCUCGAGGAGAAG&UCGUUACUCGGGCAUCUUUAC	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN5694_c0_g2_2205_TPlot.pdf
TRINITY_DN5694_c0_g2:2474	si_a571	TRINITY_DN5694_c0_g2	2463	2482	2474	-31.20	-20.40	0.653846153846154	8	1-5,2482-2478;7-19,2477-2465	6-6,x-x[BULq];20-21,2464-2463[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	AGUGCAAGCGUAUGA-UUACG&CGUGAAUCGUAUGUUUGUAAC	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a571_TRINITY_DN5694_c0_g2_2474_TPlot.pdf
TRINITY_DN5694_c0_g2:2475	si_a570	TRINITY_DN5694_c0_g2	2464	2483	2475	-31.90	-20.80	0.652037617554859	7.5	2-6,2482-2478;8-20,2477-2465	1-1,2483-2483[UP5];7-7,x-x[BULq];21-21,2464-2464[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	GUGCAAGCGUAUGA-UUACGA&CCGUGAAUCGUAUGUUUGUAA	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a570_TRINITY_DN5694_c0_g2_2475_TPlot.pdf
TRINITY_DN5694_c0_g2:2545	si_a291	TRINITY_DN5694_c0_g2	2534	2554	2545	-27.70	-19.00	0.685920577617328	7	1-4,2554-2551;6-20,2549-2535	5-5,2550-2550[SIL];21-21,2534-2534[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CAGUUUUUUUUGGGUCGAAGC&GCUUGGAUUUAAAAAAGAUUC	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN5694_c0_g2_2545_TPlot.pdf
TRINITY_DN5694_c0_g2:2547	si_a289	TRINITY_DN5694_c0_g2	2536	2556	2547	-28.20	-18.70	0.663120567375887	9	3-6,2554-2551;8-21,2549-2536	1-2,2556-2555[UP5];7-7,2550-2550[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GUUUUUUUUGGGUCGAAGCUG&UCGCUUGGAUUUAAAAAAGAU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN5694_c0_g2_2547_TPlot.pdf
TRINITY_DN5694_c0_g2:2560	si_a119	TRINITY_DN5694_c0_g2	2549	2570	2560	-30.30	-19.70	0.65016501650165	9.5	1-3,2570-2568;4-12,2566-2558;14-17,2556-2553	x-x,2567-2567[BULt];13-13,2557-2557[SIL];18-21,2552-2549[UP3]	....((((.(((((((((.(((&)))-))))))))).))))....	CGAAGCUGGAAGACAGGCAUCG&CGA-GCUUGUUUUAUAGCAAUA	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN5694_c0_g2_2560_TPlot.pdf
TRINITY_DN5694_c0_g2:2921	si_s83	TRINITY_DN5694_c0_g2	2910	2930	2921	-30.90	-20.20	0.653721682847896	10.5	2-15,2929-2916	1-1,2930-2930[UP5];16-21,2915-2910[UP3]	......((((((((((((((.&.))))))))))))))......	CAGCACGAGGGGAGGAGAGAU&UUCUUUCCUUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5694_c0_g2_2921_TPlot.pdf
TRINITY_DN5694_c0_g2:2922	si_s82	TRINITY_DN5694_c0_g2	2911	2931	2922	-28.90	-20.20	0.698961937716263	11.5	3-16,2929-2916	1-2,2931-2930[UP5];17-21,2915-2911[UP3]	.....((((((((((((((..&..)))))))))))))).....	AGCACGAGGGGAGGAGAGAUG&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5694_c0_g2_2922_TPlot.pdf
TRINITY_DN5694_c0_g2:2923	si_s81	TRINITY_DN5694_c0_g2	2912	2932	2923	-28.90	-20.20	0.698961937716263	12	4-17,2929-2916	1-3,2932-2930[UP5];18-21,2915-2912[UP3]	....((((((((((((((...&...))))))))))))))....	GCACGAGGGGAGGAGAGAUGU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN5694_c0_g2_2923_TPlot.pdf
TRINITY_DN5694_c0_g2:2924	si_s80	TRINITY_DN5694_c0_g2	2913	2933	2924	-28.20	-20.20	0.716312056737589	12.5	5-18,2929-2916	1-4,2933-2930[UP5];19-21,2915-2913[UP3]	...((((((((((((((....&....))))))))))))))...	CACGAGGGGAGGAGAGAUGUU&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999788883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5694_c0_g2_2924_TPlot.pdf
TRINITY_DN5694_c0_g2:2925	si_s79	TRINITY_DN5694_c0_g2	2914	2934	2925	-26.20	-20.20	0.770992366412214	13.5	6-19,2929-2916	1-5,2934-2930[UP5];20-21,2915-2914[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACGAGGGGAGGAGAGAUGUUU&UUUUUUCUUUCCUUUCUUCUU	2	0.999989997621771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5694_c0_g2_2925_TPlot.pdf
TRINITY_DN5694_c0_g2:2926	si_s78	TRINITY_DN5694_c0_g2	2915	2935	2926	-26.20	-20.20	0.770992366412214	14.5	7-20,2929-2916	1-6,2935-2930[UP5];21-21,2915-2915[UP3]	.((((((((((((((......&......)))))))))))))).	CGAGGGGAGGAGAGAUGUUUC&UUUUUUUCUUUCCUUUCUUCU	3	0.999999978003951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5694_c0_g2_2926_TPlot.pdf
TRINITY_DN5694_c0_g2:2927	si_s77	TRINITY_DN5694_c0_g2	2916	2936	2927	-25.50	-19.90	0.780392156862745	15.5	8-21,2929-2916	1-7,2936-2930[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGGGAGGAGAGAUGUUUCC&UUUUUUUUCUUUCCUUUCUUC	3	0.999999946397659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5694_c0_g2_2927_TPlot.pdf
TRINITY_DN5694_c0_g2:2928	si_s76	TRINITY_DN5694_c0_g2	2917	2937	2928	-23.60	-16.60	0.703389830508475	17.5	9-21,2929-2917	1-8,2937-2930[UP5]	(((((((((((((........&........)))))))))))))	AGGGGAGGAGAGAUGUUUCCG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5694_c0_g2_2928_TPlot.pdf
TRINITY_DN5694_c0_g2:2937	si_s104	TRINITY_DN5694_c0_g2	2926	2946	2937	-32.70	-21.50	0.657492354740061	9	1-6,2946-2941;8-15,2939-2932	7-7,2940-2940[SIL];16-21,2931-2926[UP3]	......((((((((.((((((&)))))).))))))))......	GAGAUGUUUCCGAUGCGAAGC&GCUUCGGAUUGGAAAAUAGAA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN5694_c0_g2_2937_TPlot.pdf
TRINITY_DN5694_c0_g2:2938	si_s103	TRINITY_DN5694_c0_g2	2927	2947	2938	-34.10	-23.00	0.674486803519062	8	1-7,2947-2941;9-16,2939-2932	8-8,2940-2940[SIL];17-21,2931-2927[UP3]	.....((((((((.(((((((&))))))).)))))))).....	AGAUGUUUCCGAUGCGAAGCG&CGCUUCGGAUUGGAAAAUAGA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN5694_c0_g2_2938_TPlot.pdf
TRINITY_DN5694_c0_g2:2939	si_s102	TRINITY_DN5694_c0_g2	2928	2948	2939	-34.10	-23.00	0.674486803519062	8	2-8,2947-2941;10-17,2939-2932	1-1,2948-2948[UP5];9-9,2940-2940[SIL];18-21,2931-2928[UP3]	....((((((((.(((((((.&.))))))).))))))))....	GAUGUUUCCGAUGCGAAGCGC&UCGCUUCGGAUUGGAAAAUAG	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN5694_c0_g2_2939_TPlot.pdf
TRINITY_DN5694_c0_g2:2940	si_s101	TRINITY_DN5694_c0_g2	2929	2949	2940	-32.50	-23.00	0.707692307692308	8.5	3-9,2947-2941;11-18,2939-2932	1-2,2949-2948[UP5];10-10,2940-2940[SIL];19-21,2931-2929[UP3]	...((((((((.(((((((..&..))))))).))))))))...	AUGUUUCCGAUGCGAAGCGCG&UUCGCUUCGGAUUGGAAAAUA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN5694_c0_g2_2940_TPlot.pdf
TRINITY_DN5694_c0_g2:2941	si_s100	TRINITY_DN5694_c0_g2	2930	2950	2941	-33.70	-23.00	0.682492581602374	9.5	4-10,2947-2941;12-19,2939-2932	1-3,2950-2948[UP5];11-11,2940-2940[SIL];20-21,2931-2930[UP3]	..((((((((.(((((((...&...))))))).))))))))..	UGUUUCCGAUGCGAAGCGCGC&CUUCGCUUCGGAUUGGAAAAU	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN5694_c0_g2_2941_TPlot.pdf
TRINITY_DN5694_c0_g2:2942	si_s99	TRINITY_DN5694_c0_g2	2931	2951	2942	-34.60	-23.00	0.664739884393064	10.5	5-11,2947-2941;13-20,2939-2932	1-4,2951-2948[UP5];12-12,2940-2940[SIL];21-21,2931-2931[UP3]	.((((((((.(((((((....&....))))))).)))))))).	GUUUCCGAUGCGAAGCGCGCG&UCUUCGCUUCGGAUUGGAAAA	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN5694_c0_g2_2942_TPlot.pdf
TRINITY_DN5694_c0_g2:2943	si_s98	TRINITY_DN5694_c0_g2	2932	2952	2943	-34.70	-22.80	0.657060518731988	10.5	6-12,2947-2941;14-21,2939-2932	1-5,2952-2948[UP5];13-13,2940-2940[SIL]	((((((((.(((((((.....&.....))))))).))))))))	UUUCCGAUGCGAAGCGCGCGG&UUCUUCGCUUCGGAUUGGAAA	2	0.997781799676397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN5694_c0_g2_2943_TPlot.pdf
TRINITY_DN56950_c0_g1:239	si_s598	TRINITY_DN56950_c0_g1	228	248	239	-28.20	-20.90	0.74113475177305	12.5	6-18,243-231	1-5,248-244[UP5];19-21,230-228[UP3]	...(((((((((((((.....&.....)))))))))))))...	GACGAGAUUCGCUUGGCAGCA&UAAAUCCAAGCGAAUCUUUUU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN56950_c0_g1_239_TPlot.pdf
TRINITY_DN56964_c0_g1:110	si_a785	TRINITY_DN56964_c0_g1	98	119	110	-25.90	-17.00	0.656370656370656	4.5	2-14,118-106;15-16,104-103;18-21,101-98	1-1,119-119[UP5];x-x,105-105[BULt];17-17,102-102[SIL]	((((.((.(((((((((((((.&.)))))))))))))-)).))))	GAAAUUACGGAAAAUGGAAGAC&CUCUUCUAUUUUUC-UAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN56964_c0_g1_110_TPlot.pdf
TRINITY_DN5696_c0_g1:1304	si_s70	TRINITY_DN5696_c0_g1	1293	1313	1304	-25.80	-16.80	0.651162790697674	9.5	2-7,1312-1307;9-16,1305-1298;18-21,1296-1293	1-1,1313-1313[UP5];8-8,1306-1306[SIL];17-17,1297-1297[SIL]	((((.((((((((.((((((.&.)))))).)))))))).))))	GGAGUGGAGAGAGCUGGAGGC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5696_c0_g1_1304_TPlot.pdf
TRINITY_DN5696_c0_g1:1307	si_a783	TRINITY_DN5696_c0_g1	1294	1316	1307	-24.70	-16.50	0.668016194331984	11	1-3,1316-1314;5-10,1312-1307;11-21,1304-1294	4-4,1313-1313[SIL];x-x,1306-1305[BULt]	(((((((((((..((((((.(((&))).))))))--)))))))))))	GAGUGGAGAGAGCUGGAGGCGUU&AACUCUUCUA--UUUUUCUAUUU	2	0.999999999748697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5696_c0_g1_1307_TPlot.pdf
TRINITY_DN5696_c0_g1:3011	si_s600	TRINITY_DN5696_c0_g1	3000	3020	3011	-28.20	-19.50	0.691489361702128	10.5	3-9,3018-3012;11-16,3010-3005	1-2,3020-3019[UP5];10-10,3011-3011[SIL];17-21,3004-3000[UP3]	.....((((((.(((((((..&..))))))).)))))).....	CGGCCGAGAUUGGCUUGGACU&AAUCCAAGCGAAUCUUUUUUA	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN5696_c0_g1_3011_TPlot.pdf
TRINITY_DN5696_c0_g1:3219	si_a635	TRINITY_DN5696_c0_g1	3208	3228	3219	-26.10	-19.00	0.727969348659004	9	3-12,3226-3217;14-18,3215-3211	1-2,3228-3227[UP5];13-13,3216-3216[SIL];19-21,3210-3208[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	ACGACUCACGGAAAUCGACGA&AUGUCGAUUUUUUUGAGUAAU	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN5696_c0_g1_3219_TPlot.pdf
TRINITY_DN5696_c0_g1:3221	si_a633	TRINITY_DN5696_c0_g1	3210	3230	3221	-26.40	-19.00	0.71969696969697	10	5-14,3226-3217;16-20,3215-3211	1-4,3230-3227[UP5];15-15,3216-3216[SIL];21-21,3210-3210[UP3]	.(((((.((((((((((....&....)))))))))).))))).	GACUCACGGAAAUCGACGAAA&UUAUGUCGAUUUUUUUGAGUA	2	0.976686832458676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5696_c0_g1_3221_TPlot.pdf
TRINITY_DN5696_c0_g1:3223	si_a631	TRINITY_DN5696_c0_g1	3212	3232	3223	-25.70	-17.30	0.673151750972763	13	7-16,3226-3217;18-21,3215-3212	1-6,3232-3227[UP5];17-17,3216-3216[SIL]	((((.((((((((((......&......)))))))))).))))	CUCACGGAAAUCGACGAAAGC&UAUUAUGUCGAUUUUUUUGAG	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN5696_c0_g1_3223_TPlot.pdf
TRINITY_DN5697_c0_g1:1687	si_s446	TRINITY_DN5697_c0_g1	1676	1696	1687	-21.30	-16.20	0.76056338028169	8	2-16,1695-1681	1-1,1696-1696[UP5];17-21,1680-1676[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUGGGUUGUUGUAUAUGAUC&UAUUAUAUAUAACAACAAUUA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN5697_c0_g1_1687_TPlot.pdf
TRINITY_DN5697_c0_g1:1692	si_s441	TRINITY_DN5697_c0_g1	1681	1701	1692	-23.20	-15.80	0.681034482758621	12.5	7-21,1695-1681	1-6,1701-1696[UP5]	(((((((((((((((......&......)))))))))))))))	GUUGUUGUAUAUGAUCUUUUU&UUACAUAUUAUAUAUAACAAC	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN5697_c0_g1_1692_TPlot.pdf
TRINITY_DN5699_c0_g1:348	si_a425	TRINITY_DN5699_c0_g1	337	356	348	-30.80	-20.20	0.655844155844156	7.5	3-8,354-349;10-12,348-346;14-21,344-337	1-2,356-355[UP5];9-9,x-x[BULq];13-13,345-345[SIL]	((((((((.(((-((((((..&..)))))).))).))))))))	CCAGCGGAGCCU-UAUUUGGG&AAUAAAUAUAGGAUCCGUUGG	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN5699_c0_g1_348_TPlot.pdf
TRINITY_DN5699_c0_g1:525	si_s617	TRINITY_DN5699_c0_g1	514	534	525	-28.30	-18.80	0.664310954063604	15.5	8-21,527-514	1-7,534-528[UP5]	((((((((((((((.......&.......))))))))))))))	GGAGGAUCGUUUGGUACGUUC&UUUAAAUCCAAGCGAUCUUUU	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN5699_c0_g1_525_TPlot.pdf
TRINITY_DN5699_c0_g1:526	si_s616	TRINITY_DN5699_c0_g1	515	535	526	-28.30	-18.50	0.653710247349823	16.5	9-21,527-515	1-8,535-528[UP5]	(((((((((((((........&........)))))))))))))	GAGGAUCGUUUGGUACGUUCU&UUUUAAAUCCAAGCGAUCUUU	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN5699_c0_g1_526_TPlot.pdf
TRINITY_DN56_c0_g1:2293	si_a898	TRINITY_DN56_c0_g1	2282	2302	2293	-20.50	-14.10	0.68780487804878	4	1-7,2302-2296;9-21,2294-2282	8-8,2295-2295[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	UUUUAUGUUAUUUUUUAUUAU&GUAAUAAUAAGUAAUAUAAAA	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN56_c0_g1_2293_TPlot.pdf
TRINITY_DN56_c0_g1:2411	si_a404	TRINITY_DN56_c0_g1	2400	2421	2411	-21.70	-14.32	0.659907834101383	10	1-9,2421-2413;13-21,2408-2400	10-12,2412-2409[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	UGAGUGUAGUUGUAAACAAUUC&GAAUUGUUU-UGUUUAUAUUUA	2	0.999999999975179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN56_c0_g1_2411_TPlot.pdf
TRINITY_DN57002_c0_g1:517	si_a17	TRINITY_DN57002_c0_g1	506	528	517	-24.30	-16.10	0.662551440329218	10	2-9,527-520;10-15,517-512;18-21,509-506	1-1,528-528[UP5];x-x,519-518[BULt];16-17,511-510[SIL]	((((..((((((..((((((((.&.))))))))--))))))..))))	AGCUUUAGAUGAGAAUGGGCUUA&AAAGCCUAU--UUAUUUUUAGUU	4	0.999999988356151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN57002_c0_g1_517_TPlot.pdf
TRINITY_DN5700_c0_g1:847	si_a142	TRINITY_DN5700_c0_g1	836	856	847	-23.50	-15.50	0.659574468085106	10.5	3-18,854-839	1-2,856-855[UP5];19-21,838-836[UP3]	...((((((((((((((((..&..))))))))))))))))...	AACGAACAAUAAUGAUUGGGG&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5700_c0_g1_847_TPlot.pdf
TRINITY_DN57011_c0_g1:27	si_s75	TRINITY_DN57011_c0_g1	16	36	27	-24.00	-18.10	0.754166666666667	9.5	3-19,34-18	1-2,36-35[UP5];20-21,17-16[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AUGAAGGAAAGGAGGAAGAGG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999769446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN57011_c0_g1_27_TPlot.pdf
TRINITY_DN5704_c0_g1:1131	si_s376	TRINITY_DN5704_c0_g1	1121	1140	1131	-42.50	-27.90	0.656470588235294	8	2-10,1139-1131;12-14,1130-1128;16-19,1126-1123	1-1,1140-1140[UP5];11-11,x-x[BULq];15-15,1127-1127[SIL];20-21,1122-1121[UP3]	..((((.(((-(((((((((.&.))))))))).))).))))..	UCGGGCAGGC-CGCGGGCGAC&AUCGCUCGCGUGUCCGCCUUA	3	0.999995299209174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN5704_c0_g1_1131_TPlot.pdf
TRINITY_DN5704_c0_g1:1304	si_s637	TRINITY_DN5704_c0_g1	1293	1315	1304	-40.90	-26.90	0.657701711491443	10.5	1-4,1315-1312;6-9,1310-1307;10-16,1304-1298;18-21,1296-1293	5-5,1311-1311[SIL];x-x,1306-1305[BULt];17-17,1297-1297[SIL]	((((.(((((((..((((.((((&)))).))))--))))))).))))	GUCGUGGGCAGAGGUGCCGGCGA&UCGUAGGCG--UUUGCCCUCGAU	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN5704_c0_g1_1304_TPlot.pdf
TRINITY_DN5704_c0_g1:1540	si_s899	TRINITY_DN5704_c0_g1	1529	1548	1540	-28.30	-19.60	0.692579505300353	8	1-6,1548-1543;8-17,1542-1533	7-7,x-x[BULq];18-21,1532-1529[UP3]	....((((((((((-((((((&)))))).))))))))))....	GCCCGAGAUUGAAG-GAGAGU&GCUUUCUCUUCAAUUUCAAUU	2	0.997781799676397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN5704_c0_g1_1540_TPlot.pdf
TRINITY_DN5704_c0_g1:1542	si_s897	TRINITY_DN5704_c0_g1	1531	1550	1542	-31.30	-22.50	0.718849840255591	7.5	2-8,1549-1543;10-19,1542-1533	1-1,1550-1550[UP5];9-9,x-x[BULq];20-21,1532-1531[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	CCGAGAUUGAAG-GAGAGUCG&AGGCUUUCUCUUCAAUUUCAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN5704_c0_g1_1542_TPlot.pdf
TRINITY_DN5704_c0_g1:1543	si_s896	TRINITY_DN5704_c0_g1	1532	1551	1543	-31.60	-22.50	0.712025316455696	8.5	3-9,1549-1543;11-20,1542-1533	1-2,1551-1550[UP5];10-10,x-x[BULq];21-21,1532-1532[UP3]	.((((((((((-(((((((..&..))))))).)))))))))).	CGAGAUUGAAG-GAGAGUCGU&UAGGCUUUCUCUUCAAUUUCA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5704_c0_g1_1543_TPlot.pdf
TRINITY_DN5704_c0_g1:1576	si_a756	TRINITY_DN5704_c0_g1	1565	1585	1576	-33.10	-23.70	0.716012084592145	7	1-10,1585-1576;12-13,1574-1573;15-20,1571-1566	11-11,1575-1575[SIL];14-14,1572-1572[SIL];21-21,1565-1565[UP3]	.((((((.((.((((((((((&)))))))))).)).)))))).	CUCAGAAUUCGGAGGGAGGUU&AACCUCCUUUGGGUUUUUGAU	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN5704_c0_g1_1576_TPlot.pdf
TRINITY_DN5704_c0_g1:1610	si_a758	TRINITY_DN5704_c0_g1	1598	1619	1610	-34.00	-22.10	0.65	9	1-8,1619-1612;10-11,1610-1609;13-18,1607-1602;19-21,1600-1598	9-9,1611-1611[SIL];12-12,1608-1608[SIL];x-x,1601-1601[BULt]	(((.((((((.((.((((((((&)))))))).)).))))))-)))	CAGCUCAGAAUUCGGAGGGAGG&CCUCCUUUGGGUUUUUGA-UUG	3	0.999999998598283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN5704_c0_g1_1610_TPlot.pdf
TRINITY_DN5704_c0_g1:1611	si_a757	TRINITY_DN5704_c0_g1	1600	1620	1611	-33.10	-22.50	0.6797583081571	8.5	1-9,1620-1612;11-12,1610-1609;14-19,1607-1602	10-10,1611-1611[SIL];13-13,1608-1608[SIL];20-21,1601-1600[UP3]	..((((((.((.(((((((((&))))))))).)).))))))..	GCUCAGAAUUCGGAGGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5704_c0_g1_1611_TPlot.pdf
TRINITY_DN5705_c0_g1:954	si_s515	TRINITY_DN5705_c0_g1	943	964	954	-24.80	-16.32	0.658064516129032	10.5	1-3,964-962;7-20,957-944	4-6,961-958[AILt];21-21,943-943[UP3]	.((((((((((((((....(((&)))-...)))))))))))))).	CUUUCGAGUUAAGGAGAGAAGA&UCU-AUAUUCUUAAUUCGAAAU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN5705_c0_g1_954_TPlot.pdf
TRINITY_DN5707_c0_g1:1187	si_s73	TRINITY_DN5707_c0_g1	1173	1196	1187	-24.00	-17.50	0.729166666666667	10	1-12,1196-1185;13-20,1181-1174	x-x,1184-1182[BULt];21-21,1173-1173[UP3]	.((((((((...((((((((((((&))))))))))))---)))))))).	UAGGGAAGGUUUAGAAAAAAUGGA&UCUAUUUUUUUU---CUUUCCUUU	3	0.999999999998473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5707_c0_g1_1187_TPlot.pdf
TRINITY_DN5707_c0_g1:1188	si_s72	TRINITY_DN5707_c0_g1	1174	1197	1188	-24.10	-18.40	0.763485477178423	6	1-13,1197-1185;14-21,1181-1174	x-x,1184-1182[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	AGGGAAGGUUUAGAAAAAAUGGAA&UUCUAUUUUUUUU---CUUUCCUU	4	0.999999626583502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5707_c0_g1_1188_TPlot.pdf
TRINITY_DN5707_c0_g1:1190	si_s70	TRINITY_DN5707_c0_g1	1176	1199	1190	-25.80	-16.90	0.655038759689922	8	3-15,1197-1185;16-21,1181-1176	1-2,1199-1198[UP5];x-x,1184-1182[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	GGAAGGUUUAGAAAAAAUGGAAAA&ACUUCUAUUUUUUUU---CUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN5707_c0_g1_1190_TPlot.pdf
TRINITY_DN5707_c0_g1:2818	si_a77	TRINITY_DN5707_c0_g1	2807	2829	2818	-22.20	-15.40	0.693693693693694	8	2-9,2828-2821;10-20,2818-2808	1-1,2829-2829[UP5];x-x,2820-2819[BULt];21-21,2807-2807[UP3]	.(((((((((((..((((((((.&.))))))))--))))))))))).	CCUUAGUGAUGAUGAAAAUAAUA&AAUUGUUUU--UCAUUAUUAAGA	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN5707_c0_g1_2818_TPlot.pdf
TRINITY_DN570_c0_g1:480	si_s587	TRINITY_DN570_c0_g1	469	489	480	-28.70	-19.98	0.69616724738676	11	5-12,485-478;16-21,474-469	1-4,489-486[UP5];13-15,477-475[SIL]	((((((...((((((((....&....))))))))...))))))	CUUGGAGUCGUCCAUGAAACU&AAAAUCAUGGAUAAAUCCAAG	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s587_TRINITY_DN570_c0_g1_480_TPlot.pdf
TRINITY_DN57109_c0_g1:305	si_a817	TRINITY_DN57109_c0_g1	295	314	305	-30.90	-24.70	0.799352750809062	2.5	1-12,314-303;14-20,302-296	13-13,x-x[BULq];21-21,295-295[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	CUCUUUUC-UUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN57109_c0_g1_305_TPlot.pdf
TRINITY_DN57117_c0_g1:322	si_s440	TRINITY_DN57117_c0_g1	311	331	322	-21.60	-14.10	0.652777777777778	8.5	3-16,329-316	1-2,331-330[UP5];17-21,315-311[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAAAAAUGUAUAAUAUGUAGA&AUUACAUAUUAUAUAUAACAA	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN57117_c0_g1_322_TPlot.pdf
TRINITY_DN5711_c0_g1:1064	si_a87	TRINITY_DN5711_c0_g1	1054	1073	1064	-27.10	-17.90	0.660516605166052	6	1-13,1073-1061;15-18,1060-1057	14-14,x-x[BULq];19-21,1056-1054[UP3]	...((((-(((((((((((((&))))))))))))).))))...	CUGUACC-UUUCUUGGUAAUG&CAUUAUUAAGAAAAGGUAACG	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a87_TRINITY_DN5711_c0_g1_1064_TPlot.pdf
TRINITY_DN5711_c0_g1:1069	si_a82	TRINITY_DN5711_c0_g1	1059	1078	1069	-23.70	-16.80	0.708860759493671	10	5-18,1074-1061;20-21,1060-1059	1-4,1078-1075[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	CC-UUUCUUGGUAAUGAUAUG&UUUUUCAUUAUUAAGAAAAGG	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN5711_c0_g1_1069_TPlot.pdf
TRINITY_DN5711_c0_g1:1071	si_a80	TRINITY_DN5711_c0_g1	1060	1080	1071	-22.10	-14.60	0.660633484162896	13	7-20,1074-1061	1-6,1080-1075[UP5];21-21,1060-1060[UP3]	.((((((((((((((......&......)))))))))))))).	CUUUCUUGGUAAUGAUAUGGU&UGUUUUUCAUUAUUAAGAAAA	3	0.999999723739162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN5711_c0_g1_1071_TPlot.pdf
TRINITY_DN5711_c0_g1:1117	si_s809	TRINITY_DN5711_c0_g1	1106	1126	1117	-28.50	-19.10	0.670175438596491	9	1-13,1126-1114	14-21,1113-1106[UP3]	........(((((((((((((&)))))))))))))........	ACUAGCUCAAGGUAACGAGGA&UCUUCGUUACCUUUUCUUAAU	2	0.999989355390308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN5711_c0_g1_1117_TPlot.pdf
TRINITY_DN5711_c0_g1:1118	si_s808	TRINITY_DN5711_c0_g1	1107	1127	1118	-28.60	-19.10	0.667832167832168	9	2-14,1126-1114	1-1,1127-1127[UP5];15-21,1113-1107[UP3]	.......(((((((((((((.&.))))))))))))).......	CUAGCUCAAGGUAACGAGGAG&AUCUUCGUUACCUUUUCUUAA	2	0.999998226760322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN5711_c0_g1_1118_TPlot.pdf
TRINITY_DN5711_c0_g1:1120	si_s806	TRINITY_DN5711_c0_g1	1109	1129	1120	-28.60	-19.10	0.667832167832168	11	4-16,1126-1114	1-3,1129-1127[UP5];17-21,1113-1109[UP3]	.....(((((((((((((...&...))))))))))))).....	AGCUCAAGGUAACGAGGAGAA&UUAUCUUCGUUACCUUUUCUU	4	0.999999999971337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5711_c0_g1_1120_TPlot.pdf
TRINITY_DN5711_c0_g1:1123	si_s803	TRINITY_DN5711_c0_g1	1112	1132	1123	-26.00	-19.40	0.746153846153846	7	2-5,1131-1128;7-19,1126-1114	1-1,1132-1132[UP5];6-6,1127-1127[SIL];20-21,1113-1112[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UCAAGGUAACGAGGAGAAAGC&AUUUUAUCUUCGUUACCUUUU	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5711_c0_g1_1123_TPlot.pdf
TRINITY_DN5711_c0_g1:1124	si_s802	TRINITY_DN5711_c0_g1	1113	1133	1124	-26.40	-19.40	0.734848484848485	8	3-6,1131-1128;8-20,1126-1114	1-2,1133-1132[UP5];7-7,1127-1127[SIL];21-21,1113-1113[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	CAAGGUAACGAGGAGAAAGCC&UAUUUUAUCUUCGUUACCUUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5711_c0_g1_1124_TPlot.pdf
TRINITY_DN5711_c0_g1:1125	si_s897	TRINITY_DN5711_c0_g1	1114	1134	1125	-31.30	-21.50	0.686900958466454	10	2-13,1133-1122	1-1,1134-1134[UP5];14-21,1121-1114[UP3]	........((((((((((((.&.))))))))))))........	AAGGUAACGAGGAGAAAGCCA&AGGCUUUCUCUUCAAUUUCAA	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN5711_c0_g1_1125_TPlot.pdf
TRINITY_DN5711_c0_g1:1126	si_s896	TRINITY_DN5711_c0_g1	1115	1135	1126	-31.60	-21.50	0.680379746835443	11	3-14,1133-1122	1-2,1135-1134[UP5];15-21,1121-1115[UP3]	.......((((((((((((..&..)))))))))))).......	AGGUAACGAGGAGAAAGCCAG&UAGGCUUUCUCUUCAAUUUCA	2	0.989873797618439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5711_c0_g1_1126_TPlot.pdf
TRINITY_DN5711_c0_g1:1127	si_s895	TRINITY_DN5711_c0_g1	1116	1136	1127	-31.10	-21.50	0.691318327974277	11.5	4-15,1133-1122	1-3,1136-1134[UP5];16-21,1121-1116[UP3]	......((((((((((((...&...))))))))))))......	GGUAACGAGGAGAAAGCCAGG&AUAGGCUUUCUCUUCAAUUUC	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN5711_c0_g1_1127_TPlot.pdf
TRINITY_DN5711_c0_g1:1129	si_s893	TRINITY_DN5711_c0_g1	1118	1138	1129	-29.10	-21.50	0.738831615120275	13.5	6-17,1133-1122	1-5,1138-1134[UP5];18-21,1121-1118[UP3]	....((((((((((((.....&.....))))))))))))....	UAACGAGGAGAAAGCCAGGAG&AAAUAGGCUUUCUCUUCAAUU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN5711_c0_g1_1129_TPlot.pdf
TRINITY_DN5711_c0_g1:1130	si_s892	TRINITY_DN5711_c0_g1	1119	1139	1130	-29.50	-21.50	0.728813559322034	14.5	7-18,1133-1122	1-6,1139-1134[UP5];19-21,1121-1119[UP3]	...((((((((((((......&......))))))))))))...	AACGAGGAGAAAGCCAGGAGA&UAAAUAGGCUUUCUCUUCAAU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN5711_c0_g1_1130_TPlot.pdf
TRINITY_DN5711_c0_g1:1288	si_a352	TRINITY_DN5711_c0_g1	1277	1297	1288	-22.50	-15.90	0.706666666666667	6.5	1-13,1297-1285;15-20,1283-1278	14-14,1284-1284[SIL];21-21,1277-1277[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AAUCGAACUGGGAUUGAUGUU&AAUAUUAAUUCUAUUUUGAUC	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN5711_c0_g1_1288_TPlot.pdf
TRINITY_DN5711_c0_g1:1421	si_a452	TRINITY_DN5711_c0_g1	1410	1430	1421	-23.00	-15.20	0.660869565217391	10.5	1-5,1430-1426;7-15,1424-1416	6-6,1425-1425[SIL];16-21,1415-1410[UP3]	......(((((((((.(((((&))))).)))))))))......	AACUUCGUAGCAACAUUUGUC&GAUAAUUGUUGUUAUAUAUAA	2	0.999159789990334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN5711_c0_g1_1421_TPlot.pdf
TRINITY_DN5711_c0_g1:392	si_a416	TRINITY_DN5711_c0_g1	381	401	392	-20.50	-13.70	0.668292682926829	5	1-17,401-385	18-21,384-381[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUAUUAUUUAUUUAAGUAUAA&UUAUAUUUAAAUAAAUAUAGG	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN5711_c0_g1_392_TPlot.pdf
TRINITY_DN5711_c0_g1:394	si_a414	TRINITY_DN5711_c0_g1	383	403	394	-18.10	-15.70	0.867403314917127	3.5	1-19,403-385	20-21,384-383[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AUUAUUUAUUUAAGUAUAAAU&GUUUAUAUUUAAAUAAAUAUA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN5711_c0_g1_394_TPlot.pdf
TRINITY_DN5711_c0_g1:398	si_a410	TRINITY_DN5711_c0_g1	387	407	398	-17.80	-14.40	0.808988764044944	6	3-21,405-387	1-2,407-406[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUUAUUUAAGUAUAAAUGAUA&UUUUGUUUAUAUUUAAAUAAA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5711_c0_g1_398_TPlot.pdf
TRINITY_DN5713_c0_g1:414	si_s523	TRINITY_DN5713_c0_g1	403	423	414	-24.50	-17.00	0.693877551020408	7	1-2,423-422;4-20,420-404	3-3,421-421[SIL];21-21,403-403[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	AAAAGGUGAUUUUGGAUUUGG&CUUAAUUCGAAAUCAUUUUUG	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN5713_c0_g1_414_TPlot.pdf
TRINITY_DN57147_c0_g1:104	si_s305	TRINITY_DN57147_c0_g1	93	113	104	-30.30	-20.00	0.66006600660066	8.5	1-8,113-106;10-11,104-103;14-19,100-95	9-9,105-105[SIL];12-13,102-101[SIL];20-21,94-93[UP3]	..((((((..((.((((((((&)))))))).))..))))))..	AUGGGCAGCUUUAUCGCAGUU&AAUUGCGAAAAUUCUGUCCUU	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN57147_c0_g1_104_TPlot.pdf
TRINITY_DN57147_c0_g1:105	si_s304	TRINITY_DN57147_c0_g1	94	114	105	-32.30	-23.40	0.724458204334365	6.5	1-9,114-106;11-12,104-103;15-20,100-95	10-10,105-105[SIL];13-14,102-101[SIL];21-21,94-94[UP3]	.((((((..((.(((((((((&))))))))).))..)))))).	UGGGCAGCUUUAUCGCAGUUC&GAAUUGCGAAAAUUCUGUCCU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN57147_c0_g1_105_TPlot.pdf
TRINITY_DN57147_c0_g1:107	si_s302	TRINITY_DN57147_c0_g1	96	116	107	-32.30	-21.00	0.65015479876161	7.5	2-11,115-106;13-14,104-103;17-21,100-96	1-1,116-116[UP5];12-12,105-105[SIL];15-16,102-101[SIL]	(((((..((.((((((((((.&.)))))))))).))..)))))	GGCAGCUUUAUCGCAGUUCUU&UGGAAUUGCGAAAAUUCUGUC	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s302_TRINITY_DN57147_c0_g1_107_TPlot.pdf
TRINITY_DN5714_c0_g2:330	si_a885	TRINITY_DN5714_c0_g2	319	341	330	-25.60	-18.30	0.71484375	9.5	1-6,341-336;7-7,334-334;9-21,331-319	x-x,335-335[BULt];8-8,333-332[AILt]	(((((((((((((..(.((((((&))))))-)-.)))))))))))))	GUUGUUGCUGUGUGCGUAUUGCA&UGCAAU-C-AAUAUAGUAAUAAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN5714_c0_g2_330_TPlot.pdf
TRINITY_DN5714_c0_g2:756	si_a72	TRINITY_DN5714_c0_g2	739	765	756	-21.90	-15.40	0.703196347031964	8.5	1-13,765-753;14-20,746-740	x-x,752-747[BULt];21-21,739-739[UP3]	.(((((((......(((((((((((((&)))))))))))))------))))))).	CUGAUGAACUGUCCAAACAAUUUGGAA&UUUCAAAUUGUUU------UUCAUUAU	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN5714_c0_g2_756_TPlot.pdf
TRINITY_DN5714_c0_g2:757	si_a71	TRINITY_DN5714_c0_g2	740	766	757	-23.30	-15.50	0.665236051502146	8.5	2-14,765-753;15-21,746-740	1-1,766-766[UP5];x-x,752-747[BULt]	(((((((......(((((((((((((.&.)))))))))))))------)))))))	UGAUGAACUGUCCAAACAAUUUGGAAU&CUUUCAAAUUGUUU------UUCAUUA	3	0.999999999979205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN5714_c0_g2_757_TPlot.pdf
TRINITY_DN5715_c0_g1:2386	si_s1	TRINITY_DN5715_c0_g1	2375	2395	2386	-18.70	-12.20	0.652406417112299	10.5	2-14,2394-2382	1-1,2395-2395[UP5];15-21,2381-2375[UP3]	.......(((((((((((((.&.))))))))))))).......	CCGAAACGAGUGAUAUAGAAG&UUUUUAUAUUACUUAUUAUUA	2	0.999999976968622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN5715_c0_g1_2386_TPlot.pdf
TRINITY_DN5715_c2_g1:267	si_a449	TRINITY_DN5715_c2_g1	256	276	267	-25.70	-17.40	0.67704280155642	8.5	2-7,275-270;10-21,267-256	1-1,276-276[UP5];8-9,269-268[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	UGUAUAGUAGCAUGUGUCUCG&UGAGAUAAUUGUUGUUAUAUA	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN5715_c2_g1_267_TPlot.pdf
TRINITY_DN5720_c0_g1:1427	si_a642	TRINITY_DN5720_c0_g1	1416	1436	1427	-25.90	-18.20	0.702702702702703	9.5	4-11,1433-1426;13-21,1424-1416	1-3,1436-1434[UP5];12-12,1425-1425[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	CCGAUAUGUAACUUAAAGUUC&UUUUUUUGAGUAAUAUAUCGG	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5720_c0_g1_1427_TPlot.pdf
TRINITY_DN5720_c0_g1:1631	si_s75	TRINITY_DN5720_c0_g1	1620	1640	1631	-24.00	-17.70	0.7375	7	4-13,1637-1628;15-21,1626-1620	1-3,1640-1638[UP5];14-14,1627-1627[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	AGAAAGGCAAGAAGAAAACGG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5720_c0_g1_1631_TPlot.pdf
TRINITY_DN5720_c0_g2:79	si_s94	TRINITY_DN5720_c0_g2	67	89	79	-35.50	-23.10	0.650704225352113	6.5	1-4,89-86;6-15,83-74;16-17,72-71;19-21,69-67	5-5,85-84[AILt];x-x,73-73[BULt];18-18,70-70[SIL]	(((.((.((((((((((..((((&))))-.))))))))))-)).)))	CGACCCAGAAGCGAAGACUGAAG&CUUC-UUCUUCGCUUC-GGAUUG	2	0.99999861751138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN5720_c0_g2_79_TPlot.pdf
TRINITY_DN5720_c0_g2:80	si_s93	TRINITY_DN5720_c0_g2	68	90	80	-34.80	-24.20	0.695402298850575	8	1-5,90-86;7-16,83-74;17-18,72-71	6-6,85-84[AILt];x-x,73-73[BULt];19-21,70-68[UP3]	...((.((((((((((..(((((&)))))-.))))))))))-))...	GACCCAGAAGCGAAGACUGAAGA&UCUUC-UUCUUCGCUUC-GGAUU	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5720_c0_g2_80_TPlot.pdf
TRINITY_DN5720_c0_g2:83	si_s90	TRINITY_DN5720_c0_g2	71	93	83	-35.30	-24.70	0.69971671388102	8	2-8,92-86;10-19,83-74;20-21,72-71	1-1,93-93[UP5];9-9,85-84[AILt];x-x,73-73[BULt]	((.((((((((((..(((((((.&.)))))))-.))))))))))-))	CCAGAAGCGAAGACUGAAGAGGA&CUUUCUUC-UUCUUCGCUUC-GG	4	0.999999663202245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5720_c0_g2_83_TPlot.pdf
TRINITY_DN5720_c0_g2:86	si_s88	TRINITY_DN5720_c0_g2	74	93	86	-34.80	-24.00	0.689655172413793	8	1-3,93-91;6-10,90-86;12-21,83-74	4-5,x-x[BULq];11-11,85-84[AILt]	((((((((((..(((((--(((&)))..)))))-.))))))))))	GAAGCGAAGACUGAAGA--GGA&UCCUUUCUUC-UUCUUCGCUUC	3	0.999999999363527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5720_c0_g2_86_TPlot.pdf
TRINITY_DN5721_c0_g1:1455	si_a83	TRINITY_DN5721_c0_g1	1444	1464	1455	-24.50	-16.90	0.689795918367347	6	2-17,1463-1448	1-1,1464-1464[UP5];18-21,1447-1444[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUAUUUCUUAAUAAUGAGAG&UUUUCAUUAUUAAGAAAAGGU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN5721_c0_g1_1455_TPlot.pdf
TRINITY_DN5722_c1_g1:2555	si_a627	TRINITY_DN5722_c1_g1	2544	2563	2555	-29.50	-19.80	0.671186440677966	9	1-7,2563-2557;10-13,2555-2552;15-18,2550-2547	8-9,2556-2556[AILq];14-14,2551-2551[SIL];19-21,2546-2544[UP3]	...((((.((((.-(((((((&)))))))..)))).))))...	AUCAAAUGGACAG-GUACGCC&GGCGUAUUAUGUCGAUUUUUU	2	0.997609809439789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5722_c1_g1_2555_TPlot.pdf
TRINITY_DN5722_c1_g1:2556	si_a626	TRINITY_DN5722_c1_g1	2545	2564	2556	-30.20	-19.90	0.658940397350993	9	2-8,2563-2557;11-14,2555-2552;16-19,2550-2547	1-1,2564-2564[UP5];9-10,2556-2556[AILq];15-15,2551-2551[SIL];20-21,2546-2545[UP3]	..((((.((((.-(((((((.&.)))))))..)))).))))..	UCAAAUGGACAG-GUACGCCA&AGGCGUAUUAUGUCGAUUUUU	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN5722_c1_g1_2556_TPlot.pdf
TRINITY_DN5722_c1_g1:2557	si_a625	TRINITY_DN5722_c1_g1	2546	2565	2557	-30.60	-19.90	0.650326797385621	10	3-9,2563-2557;12-15,2555-2552;17-20,2550-2547	1-2,2565-2564[UP5];10-11,2556-2556[AILq];16-16,2551-2551[SIL];21-21,2546-2546[UP3]	.((((.((((.-(((((((..&..)))))))..)))).)))).	CAAAUGGACAG-GUACGCCAA&UAGGCGUAUUAUGUCGAUUUU	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN5722_c1_g1_2557_TPlot.pdf
TRINITY_DN5725_c0_g1:1550	si_a545	TRINITY_DN5725_c0_g1	1539	1559	1550	-28.10	-18.80	0.669039145907473	8.5	1-6,1559-1554;9-12,1551-1548;15-21,1545-1539	7-8,1553-1552[SIL];13-14,1547-1546[SIL]	(((((((..((((..((((((&))))))..))))..)))))))	GUAAAGAUCUGGAGGGAACUG&CGGUUCAAUCUAUUUCUUUAU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN5725_c0_g1_1550_TPlot.pdf
TRINITY_DN5726_c0_g1:1269	si_a754	TRINITY_DN5726_c0_g1	1258	1278	1269	-34.60	-23.00	0.664739884393064	7.5	2-12,1277-1267;14-17,1265-1262	1-1,1278-1278[UP5];13-13,1266-1266[SIL];18-21,1261-1258[UP3]	....((((.(((((((((((.&.))))))))))).))))....	CCACAGCCAAGAGGAGGUUCU&UGAACCUCCUUUGGGUUUUUG	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN5726_c0_g1_1269_TPlot.pdf
TRINITY_DN5726_c0_g1:1270	si_a753	TRINITY_DN5726_c0_g1	1259	1279	1270	-33.10	-23.00	0.694864048338369	8.5	3-13,1277-1267;15-18,1265-1262	1-2,1279-1278[UP5];14-14,1266-1266[SIL];19-21,1261-1259[UP3]	...((((.(((((((((((..&..))))))))))).))))...	CACAGCCAAGAGGAGGUUCUU&AUGAACCUCCUUUGGGUUUUU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN5726_c0_g1_1270_TPlot.pdf
TRINITY_DN5726_c0_g1:3784	si_s796	TRINITY_DN5726_c0_g1	3772	3793	3784	-30.30	-23.40	0.772277227722772	7.5	2-12,3792-3782;14-21,3779-3772	1-1,3793-3793[UP5];13-13,3781-3780[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	GACGAAGACAGAGAUACGAGUC&AGCUCGUAUUUU-AUCUUCGUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN5726_c0_g1_3784_TPlot.pdf
TRINITY_DN5726_c0_g2:680	si_a322	TRINITY_DN5726_c0_g2	671	689	680	-27.00	-18.38	0.680740740740741	8	2-10,688-680;15-21,677-671	1-1,689-689[UP5];11-14,679-678[AILq]	(((((((..--(((((((((.&.)))))))))....)))))))	AGGAGUGUC--AAUCAUGGAA&AUCCAUGAUUUUUUUAUUCCU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN5726_c0_g2_680_TPlot.pdf
TRINITY_DN5728_c0_g1:5716	si_s635	TRINITY_DN5728_c0_g1	5705	5727	5716	-39.80	-27.50	0.690954773869347	11	2-6,5726-5722;8-11,5718-5715;13-21,5713-5705	1-1,5727-5727[UP5];7-7,5721-5719[AILt];12-12,5714-5714[SIL]	(((((((((.((((...(((((.&.)))))--.)))).)))))))))	CGAGGGCGGCCGCCGAAACGAGU&UUUCGU--AGGCGUUUGCCCUCG	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN5728_c0_g1_5716_TPlot.pdf
TRINITY_DN5728_c0_g1:5862	si_s805	TRINITY_DN5728_c0_g1	5851	5871	5862	-28.60	-21.10	0.737762237762238	10	5-17,5867-5855;19-20,5853-5852	1-4,5871-5868[UP5];18-18,5854-5854[SIL];21-21,5851-5851[UP3]	.((.(((((((((((((....&....))))))))))))).)).	UGACAAGGUGACGAAGAGGAU&UUUAUCUUCGUUACCUUUUCU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN5728_c0_g1_5862_TPlot.pdf
TRINITY_DN5728_c0_g1:5864	si_s803	TRINITY_DN5728_c0_g1	5853	5873	5864	-26.00	-19.50	0.75	13.5	7-19,5867-5855	1-6,5873-5868[UP5];20-21,5854-5853[UP3]	..(((((((((((((......&......)))))))))))))..	ACAAGGUGACGAAGAGGAUGG&AUUUUAUCUUCGUUACCUUUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5728_c0_g1_5864_TPlot.pdf
TRINITY_DN5728_c0_g1:6061	si_s795	TRINITY_DN5728_c0_g1	6050	6069	6061	-30.30	-22.00	0.726072607260726	5.5	2-7,6068-6063;9-13,6062-6058;15-21,6056-6050	1-1,6069-6069[UP5];8-8,x-x[BULq];14-14,6057-6057[SIL]	(((((((.(((((-((((((.&.)))))).))))).)))))))	ACGAAGAAGAAGU-CGAGCUC&AAGCUCGUAUUUUAUCUUCGU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN5728_c0_g1_6061_TPlot.pdf
TRINITY_DN5728_c0_g1:6629	si_s375	TRINITY_DN5728_c0_g1	6619	6637	6629	-44.10	-28.80	0.653061224489796	8.5	1-6,6637-6632;8-10,6631-6629;13-13,6626-6626;15-21,6625-6619	7-7,x-x[BULq];11-12,6628-6627[SIL];14-14,x-x[BULq]	(((((((-(..(((-((((((&)))))).)))..).)))))))	GAGGCGG-CCGGCG-GCGGUC&GAUCGCUCGCGUGUCCGCCUU	4	0.999989635785725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN5728_c0_g1_6629_TPlot.pdf
TRINITY_DN5729_c0_g1:1917	si_s412	TRINITY_DN5729_c0_g1	1902	1926	1917	-26.40	-17.40	0.659090909090909	11.5	2-11,1925-1916;12-19,1911-1904	1-1,1926-1926[UP5];x-x,1915-1912[BULt];20-21,1903-1902[UP3]	..((((((((....((((((((((.&.))))))))))----))))))))..	GGAUGGAAUACGGUUGUCGUUUUUG&GAAAAACGACA----UAUUCUAUAU	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s412_TRINITY_DN5729_c0_g1_1917_TPlot.pdf
TRINITY_DN5730_c0_g1:294	si_a322	TRINITY_DN5730_c0_g1	278	303	294	-27.00	-18.00	0.666666666666667	11.5	1-9,303-295;11-14,293-290;15-21,284-278	10-10,294-294[SIL];x-x,289-285[BULt]	(((((((.....((((.(((((((((&))))))))).))))-----)))))))	GGGGAUGGUUCAAAGAUGUCGUGGAU&AUCCAUGAUUUUUU-----UAUUCCU	2	0.999745621940372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN5730_c0_g1_294_TPlot.pdf
TRINITY_DN5733_c0_g1:514	si_a440	TRINITY_DN5733_c0_g1	504	523	514	-30.80	-21.30	0.691558441558442	5	2-13,522-511;15-19,510-506;21-21,504-504	1-1,523-523[UP5];14-14,x-x[BULq];20-20,505-505[SIL]	(.(((((-((((((((((((.&.)))))))))))).))))).)	GGAAUUG-CUCAUAUCCGACU&CGUUGGAUAUGAGAUAAUUGU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN5733_c0_g1_514_TPlot.pdf
TRINITY_DN5733_c0_g1:516	si_a438	TRINITY_DN5733_c0_g1	506	525	516	-31.70	-20.80	0.65615141955836	7.5	4-15,522-511;17-21,510-506	1-3,525-523[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	AAUUG-CUCAUAUCCGACUCU&UCCGUUGGAUAUGAGAUAAUU	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN5733_c0_g1_516_TPlot.pdf
TRINITY_DN57343_c0_g1:210	si_a869	TRINITY_DN57343_c0_g1	199	218	210	-24.80	-18.60	0.75	5.5	1-7,218-212;9-20,211-200	8-8,x-x[BULq];21-21,199-199[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	AUGUAACUAAAUC-UUGAUGA&UUAUUAAAGAUUUAGUUGCAA	1	0.00907521648765597	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN57343_c0_g1_210_TPlot.pdf
TRINITY_DN57351_c0_g1:254	si_a147	TRINITY_DN57351_c0_g1	243	263	254	-30.40	-20.70	0.680921052631579	10	2-14,262-250;17-20,247-244	1-1,263-263[UP5];15-16,249-248[SIL];21-21,243-243[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	GGGCCGCGAGAUGACGGCGAC&AUCGUUGUUGUUUUAAGGUCA	4	0.999809637231312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN57351_c0_g1_254_TPlot.pdf
TRINITY_DN5735_c0_g1:1913	si_s101	TRINITY_DN5735_c0_g1	1902	1923	1913	-32.50	-21.40	0.658461538461538	9.5	2-5,1922-1919;6-16,1917-1907	1-1,1923-1923[UP5];x-x,1918-1918[BULt];17-21,1906-1902[UP3]	.....(((((((((((.((((.&.))))-))))))))))).....	UUGCCUUCAGUCCGAACGCGAC&UUCGC-UUCGGAUUGGAAAAUA	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN5735_c0_g1_1913_TPlot.pdf
TRINITY_DN5735_c0_g1:2224	si_s154	TRINITY_DN5735_c0_g1	2213	2232	2224	-41.30	-27.10	0.656174334140436	11.5	5-6,2228-2227;8-20,2226-2214	1-4,2232-2229[UP5];7-7,x-x[BULq];21-21,2213-2213[UP3]	.(((((((((((((-((....&....)).))))))))))))).	GCUGGUCAUGAGCC-CCGAUA&CAAAGGAGGUUCAUGGCCAGG	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s154_TRINITY_DN5735_c0_g1_2224_TPlot.pdf
TRINITY_DN5735_c0_g1:2353	si_s459	TRINITY_DN5735_c0_g1	2342	2362	2353	-29.30	-19.30	0.658703071672355	11.5	3-7,2360-2356;9-18,2354-2345	1-2,2362-2361[UP5];8-8,2355-2355[SIL];19-21,2344-2342[UP3]	...((((((((((.(((((..&..))))).))))))))))...	CAAGGAUGUGAGGGGGUUGGU&AACAAUUAUCUCAUAUCCAAC	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN5735_c0_g1_2353_TPlot.pdf
TRINITY_DN5735_c0_g1:2354	si_s458	TRINITY_DN5735_c0_g1	2343	2363	2354	-29.30	-19.30	0.658703071672355	12.5	4-8,2360-2356;10-19,2354-2345	1-3,2363-2361[UP5];9-9,2355-2355[SIL];20-21,2344-2343[UP3]	..((((((((((.(((((...&...))))).))))))))))..	AAGGAUGUGAGGGGGUUGGUC&CAACAAUUAUCUCAUAUCCAA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN5735_c0_g1_2354_TPlot.pdf
TRINITY_DN5735_c0_g1:2396	si_a492	TRINITY_DN5735_c0_g1	2385	2406	2396	-30.20	-20.10	0.665562913907285	7	1-7,2406-2400;9-14,2397-2392;16-20,2390-2386	8-8,2399-2398[AILt];15-15,2391-2391[SIL];21-21,2385-2385[UP3]	.(((((.((((((..(((((((&)))))))-.)))))).))))).	CGGCGAUAGACGAGGAUAUUCU&AGAAUAU-GUCGUUUUUCGUCU	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN5735_c0_g1_2396_TPlot.pdf
TRINITY_DN5735_c0_g1:2397	si_a491	TRINITY_DN5735_c0_g1	2386	2407	2397	-29.90	-20.90	0.698996655518395	6	1-8,2407-2400;10-15,2397-2392;17-21,2390-2386	9-9,2399-2398[AILt];16-16,2391-2391[SIL]	(((((.((((((..((((((((&))))))))-.)))))).)))))	GGCGAUAGACGAGGAUAUUCUA&UAGAAUAU-GUCGUUUUUCGUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN5735_c0_g1_2397_TPlot.pdf
TRINITY_DN5735_c0_g1:2398	si_a490	TRINITY_DN5735_c0_g1	2387	2408	2398	-28.10	-18.50	0.658362989323843	7	2-9,2407-2400;11-16,2397-2392;18-21,2390-2387	1-1,2408-2408[UP5];10-10,2399-2398[AILt];17-17,2391-2391[SIL]	((((.((((((..((((((((.&.))))))))-.)))))).))))	GCGAUAGACGAGGAUAUUCUAC&AUAGAAUAU-GUCGUUUUUCGU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN5735_c0_g1_2398_TPlot.pdf
TRINITY_DN5735_c0_g1:2484	si_a280	TRINITY_DN5735_c0_g1	2473	2493	2484	-32.10	-21.80	0.679127725856698	15.5	8-21,2486-2473	1-7,2493-2487[UP5]	((((((((((((((.......&.......))))))))))))))	GGGUCCAAGCGGUCAUGUAAA&ACGAAAAGAUCGCUUGGAUUU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a280_TRINITY_DN5735_c0_g1_2484_TPlot.pdf
TRINITY_DN5735_c0_g1:2485	si_a279	TRINITY_DN5735_c0_g1	2474	2494	2485	-32.50	-21.40	0.658461538461538	17	9-21,2486-2474	1-8,2494-2487[UP5]	(((((((((((((........&........)))))))))))))	GGUCCAAGCGGUCAUGUAAAU&UACGAAAAGAUCGCUUGGAUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a279_TRINITY_DN5735_c0_g1_2485_TPlot.pdf
TRINITY_DN5735_c0_g1:851	si_a724	TRINITY_DN5735_c0_g1	840	860	851	-36.70	-24.20	0.659400544959128	7.5	1-10,860-851;13-19,848-842	11-12,850-849[SIL];20-21,841-840[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	GCAAAGAUGGACGAGUGACGG&UCGUUACUCGGGCAUCUUUAC	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a724_TRINITY_DN5735_c0_g1_851_TPlot.pdf
TRINITY_DN5735_c0_g1:852	si_a723	TRINITY_DN5735_c0_g1	841	861	852	-35.10	-24.20	0.689458689458689	7	2-11,860-851;14-20,848-842	1-1,861-861[UP5];12-13,850-849[SIL];21-21,841-841[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	CAAAGAUGGACGAGUGACGGG&AUCGUUACUCGGGCAUCUUUA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN5735_c0_g1_852_TPlot.pdf
TRINITY_DN5735_c0_g1:853	si_a722	TRINITY_DN5735_c0_g1	842	862	853	-34.70	-24.00	0.69164265129683	7	3-12,860-851;15-21,848-842	1-2,862-861[UP5];13-14,850-849[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AAAGAUGGACGAGUGACGGGA&AAUCGUUACUCGGGCAUCUUU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN5735_c0_g1_853_TPlot.pdf
TRINITY_DN5735_c0_g1:854	si_a721	TRINITY_DN5735_c0_g1	843	863	854	-35.10	-23.20	0.660968660968661	9	4-13,860-851;16-21,848-843	1-3,863-861[UP5];14-15,850-849[SIL]	((((((..((((((((((...&...))))))))))..))))))	AAGAUGGACGAGUGACGGGAA&UAAUCGUUACUCGGGCAUCUU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN5735_c0_g1_854_TPlot.pdf
TRINITY_DN5735_c0_g1:924	si_s888	TRINITY_DN5735_c0_g1	914	933	924	-26.80	-18.40	0.686567164179104	8	4-15,930-919;17-21,918-914	1-3,933-931[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	AAGAG-AAGCUUAUUUGUAUA&AAAAUAAAUAGGCUUUCUCUU	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN5735_c0_g1_924_TPlot.pdf
TRINITY_DN5735_c0_g1:925	si_s887	TRINITY_DN5735_c0_g1	915	934	925	-26.80	-17.50	0.652985074626866	10	5-16,930-919;18-21,918-915	1-4,934-931[UP5];17-17,x-x[BULq]	((((-((((((((((((....&....)))))))))))).))))	AGAG-AAGCUUAUUUGUAUAU&AAAAAUAAAUAGGCUUUCUCU	2	0.99442823870057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN5735_c0_g1_925_TPlot.pdf
TRINITY_DN57390_c0_g1:18	si_a320	TRINITY_DN57390_c0_g1	7	27	18	-24.40	-17.70	0.725409836065574	6	2-19,26-9	1-1,27-27[UP5];20-21,8-7[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GUAUAAAAAAAUUAUGGGUGC&UUAUCCAUGAUUUUUUUAUUC	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN57390_c0_g1_18_TPlot.pdf
TRINITY_DN573_c0_g1:1728	si_s83	TRINITY_DN573_c0_g1	1715	1737	1728	-30.90	-20.40	0.660194174757282	13	6-16,1732-1722;17-21,1719-1715	1-5,1737-1733[UP5];x-x,1721-1720[BULt]	(((((..(((((((((((.....&.....)))))))))))--)))))	GAGGAUAGGAAGAGAGGACAUUA&UUCUUUCCUUUCUUCU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN573_c0_g1_1728_TPlot.pdf
TRINITY_DN573_c0_g1:3895	si_s74	TRINITY_DN573_c0_g1	3884	3904	3895	-25.00	-20.30	0.812	5.5	2-8,3903-3897;10-21,3895-3884	1-1,3904-3904[UP5];9-9,3896-3896[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	GAAAGGGAAGAGUAAAGAUAA&CUAUUUUUUUUCUUUCCUUUC	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN573_c0_g1_3895_TPlot.pdf
TRINITY_DN573_c0_g1:5964	si_s775	TRINITY_DN573_c0_g1	5953	5973	5964	-25.00	-17.80	0.712	9.5	3-16,5971-5958	1-2,5973-5972[UP5];17-21,5957-5953[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUACCUGUAGCAGUAGUAAAA&AAUUACUAUUGCUAUAAAACA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN573_c0_g1_5964_TPlot.pdf
TRINITY_DN573_c0_g1:5966	si_s773	TRINITY_DN573_c0_g1	5955	5975	5966	-23.10	-17.80	0.770562770562771	11.5	5-18,5971-5958	1-4,5975-5972[UP5];19-21,5957-5955[UP3]	...((((((((((((((....&....))))))))))))))...	ACCUGUAGCAGUAGUAAAAGA&UUAAUUACUAUUGCUAUAAAA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN573_c0_g1_5966_TPlot.pdf
TRINITY_DN573_c0_g1:5967	si_s772	TRINITY_DN573_c0_g1	5956	5976	5967	-23.20	-17.80	0.767241379310345	12.5	6-19,5971-5958	1-5,5976-5972[UP5];20-21,5957-5956[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCUGUAGCAGUAGUAAAAGAA&AUUAAUUACUAUUGCUAUAAA	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN573_c0_g1_5967_TPlot.pdf
TRINITY_DN573_c0_g1:5968	si_s771	TRINITY_DN573_c0_g1	5957	5977	5968	-25.20	-17.80	0.706349206349206	13	7-20,5971-5958	1-6,5977-5972[UP5];21-21,5957-5957[UP3]	.((((((((((((((......&......)))))))))))))).	CUGUAGCAGUAGUAAAAGAAA&GAUUAAUUACUAUUGCUAUAA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN573_c0_g1_5968_TPlot.pdf
TRINITY_DN573_c0_g1:6040	si_s894	TRINITY_DN573_c0_g1	6029	6049	6040	-29.10	-19.10	0.656357388316151	13.5	5-16,6045-6034	1-4,6049-6046[UP5];17-21,6033-6029[UP3]	.....((((((((((((....&....)))))))))))).....	UAAAAGGAGAGAAAGCUACUG&AAUAGGCUUUCUCUUCAAUUU	3	0.999999999686623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN573_c0_g1_6040_TPlot.pdf
TRINITY_DN573_c0_g1:6041	si_s893	TRINITY_DN573_c0_g1	6030	6050	6041	-29.10	-19.10	0.656357388316151	14.5	6-17,6045-6034	1-5,6050-6046[UP5];18-21,6033-6030[UP3]	....((((((((((((.....&.....))))))))))))....	AAAAGGAGAGAAAGCUACUGG&AAAUAGGCUUUCUCUUCAAUU	3	0.999999996064119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN573_c0_g1_6041_TPlot.pdf
TRINITY_DN573_c0_g1:7064	si_s79	TRINITY_DN573_c0_g1	7049	7073	7064	-26.20	-17.60	0.67175572519084	9.5	2-7,7072-7067;9-14,7065-7060;15-21,7055-7049	1-1,7073-7073[UP5];8-8,7066-7066[SIL];x-x,7059-7056[BULt]	(((((((....((((((.((((((.&.)))))).))))))----)))))))	AAGAAGAGUCAGAGGAACGAGAGAU&UUUUUUCUUUCCUU----UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN573_c0_g1_7064_TPlot.pdf
TRINITY_DN573_c0_g1:7460	si_a784	TRINITY_DN573_c0_g1	7449	7471	7460	-24.70	-16.70	0.676113360323887	6.5	1-2,7471-7470;3-7,7468-7464;9-21,7461-7449	x-x,7469-7469[BULt];8-8,7463-7462[AILt]	(((((((((((((..(((((.((&))-)))))-.)))))))))))))	GAAAUAGAAAAAUUUGAAGACGU&AC-UCUUC-UAUUUUUCUAUUUU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN573_c0_g1_7460_TPlot.pdf
TRINITY_DN573_c0_g1:7557	si_s78	TRINITY_DN573_c0_g1	7545	7566	7557	-26.20	-17.30	0.66030534351145	6	2-16,7565-7551;17-18,7549-7548	1-1,7566-7566[UP5];x-x,7550-7550[BULt];19-21,7547-7545[UP3]	...((.(((((((((((((((.&.)))))))))))))))-))...	CCCAGAAAAGGAAAGAAAAAGG&UUUUUUUCUUUCCUUU-CUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN573_c0_g1_7557_TPlot.pdf
TRINITY_DN573_c0_g1:7558	si_s77	TRINITY_DN573_c0_g1	7546	7567	7558	-25.50	-18.90	0.741176470588235	5	1-17,7567-7551;18-19,7549-7548	x-x,7550-7550[BULt];20-21,7547-7546[UP3]	..((.(((((((((((((((((&)))))))))))))))))-))..	CCAGAAAAGGAAAGAAAAAGGA&UUUUUUUUCUUUCCUUU-CUUC	3	0.999999999999942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN573_c0_g1_7558_TPlot.pdf
TRINITY_DN573_c0_g1:7559	si_s76	TRINITY_DN573_c0_g1	7547	7568	7559	-23.60	-18.90	0.800847457627119	5	2-18,7567-7551;19-20,7549-7548	1-1,7568-7568[UP5];x-x,7550-7550[BULt];21-21,7547-7547[UP3]	.((.(((((((((((((((((.&.)))))))))))))))))-)).	CAGAAAAGGAAAGAAAAAGGAA&AUUUUUUUUCUUUCCUUU-CUU	3	0.999999800174655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN573_c0_g1_7559_TPlot.pdf
TRINITY_DN573_c0_g1:7563	si_s68	TRINITY_DN573_c0_g1	7552	7572	7563	-23.10	-20.40	0.883116883116883	4	1-8,7572-7565;10-21,7563-7552	9-9,7564-7564[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AAGGAAAGAAAAAGGAAGUUG&CAACUUCUAUUUUUUUUCUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN573_c0_g1_7563_TPlot.pdf
TRINITY_DN573_c0_g1:7675	si_a404	TRINITY_DN573_c0_g1	7663	7684	7675	-21.70	-14.90	0.686635944700461	8	3-15,7682-7670;16-20,7668-7664	1-2,7684-7683[UP5];x-x,7669-7669[BULt];21-21,7663-7663[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	AAGAUGCUAAGCAAAGCAAUAU&GAAUUGUUUUGUUUA-UAUUUA	3	0.999999999699057	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN573_c0_g1_7675_TPlot.pdf
TRINITY_DN573_c0_g1:8027	si_s78	TRINITY_DN573_c0_g1	8009	8036	8027	-26.20	-18.00	0.687022900763359	11	1-5,8036-8032;7-15,8030-8022;16-21,8014-8009	6-6,8031-8031[SIL];x-x,8021-8015[BULt]	((((((.......(((((((((.(((((&))))).)))))))))-------))))))	AGAAGAGAAAAAGAAGGAAAGAUGAAGA&UUUUUUUCUUUCCUU-------UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN573_c0_g1_8027_TPlot.pdf
TRINITY_DN573_c0_g1:8036	si_s74	TRINITY_DN573_c0_g1	8020	8045	8036	-25.00	-17.70	0.708	13.5	1-10,8045-8036;11-20,8030-8021	x-x,8035-8031[BULt];21-21,8020-8020[UP3]	.((((((((((.....((((((((((&))))))))))-----)))))))))).	AGAAGGAAAGAUGAAGAAAAAAGUGG&CUAUUUUUUU-----UCUUUCCUUUC	3	0.999999999999961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN573_c0_g1_8036_TPlot.pdf
TRINITY_DN573_c0_g1:8397	si_s79	TRINITY_DN573_c0_g1	8388	8406	8397	-26.20	-17.30	0.66030534351145	4	2-11,8405-8396;14-21,8395-8388	1-1,8406-8406[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	AAGAAGAA--GAAAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN573_c0_g1_8397_TPlot.pdf
TRINITY_DN573_c0_g1:8398	si_s78	TRINITY_DN573_c0_g1	8389	8407	8398	-26.20	-17.90	0.683206106870229	3	1-12,8407-8396;15-21,8395-8389	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGAAGAA--GAAAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN573_c0_g1_8398_TPlot.pdf
TRINITY_DN573_c0_g1:8399	si_s77	TRINITY_DN573_c0_g1	8390	8408	8399	-25.50	-16.80	0.658823529411765	4	2-13,8407-8396;16-21,8395-8390	1-1,8408-8408[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	GAAGAA--GAAAGAAAAAGAU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN573_c0_g1_8399_TPlot.pdf
TRINITY_DN573_c0_g1:8406	si_s80	TRINITY_DN573_c0_g1	8390	8415	8406	-28.20	-19.30	0.684397163120567	14	1-7,8415-8409;9-10,8407-8406;11-21,8400-8390	8-8,8408-8408[SIL];x-x,8405-8401[BULt]	(((((((((((.....((.(((((((&))))))).))-----)))))))))))	GAAGAAGAAAGAAAAAGAUGGAGAAA&UUUUUCUUUC-----CUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN573_c0_g1_8406_TPlot.pdf
TRINITY_DN573_c0_g1:8793	si_a441	TRINITY_DN573_c0_g1	8781	8802	8793	-29.30	-19.20	0.655290102389078	7.5	1-9,8802-8794;11-11,8792-8792;12-15,8790-8787;17-21,8785-8781	10-10,8793-8793[SIL];x-x,8791-8791[BULt];16-16,8786-8786[SIL]	(((((.((((.(.(((((((((&))))))))).)-)))).)))))	GACAAAUAUCAUGAUGUCCGAC&GUUGGAUAUGA-GAUAAUUGUU	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN573_c0_g1_8793_TPlot.pdf
TRINITY_DN573_c0_g1:9242	si_s79	TRINITY_DN573_c0_g1	9233	9251	9242	-26.20	-17.30	0.66030534351145	4	2-11,9250-9241;14-21,9240-9233	1-1,9251-9251[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	AAGAAGAA--GAAAGAAAAAG&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN573_c0_g1_9242_TPlot.pdf
TRINITY_DN573_c0_g1:9243	si_s78	TRINITY_DN573_c0_g1	9234	9252	9243	-26.20	-17.90	0.683206106870229	3	1-12,9252-9241;15-21,9240-9234	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	AGAAGAA--GAAAGAAAAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN573_c0_g1_9243_TPlot.pdf
TRINITY_DN573_c0_g1:9244	si_s77	TRINITY_DN573_c0_g1	9235	9253	9244	-25.50	-16.80	0.658823529411765	4	2-13,9252-9241;16-21,9240-9235	1-1,9253-9253[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	GAAGAA--GAAAGAAAAAGAU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN573_c0_g1_9244_TPlot.pdf
TRINITY_DN573_c0_g1:9385	si_s83	TRINITY_DN573_c0_g1	9374	9399	9385	-30.90	-21.10	0.68284789644013	13	2-7,9398-9393;8-20,9387-9375	1-1,9399-9399[UP5];x-x,9392-9388[BULt];21-21,9374-9374[UP3]	.(((((((((((((.....((((((.&.))))))-----))))))))))))).	AAAGAAGAAGAAAGUUAAAGAAGGAG&UUCUUUC-----CUUUCUUCUUCUUC	2	0.999999999999276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN573_c0_g1_9385_TPlot.pdf
TRINITY_DN573_c0_g1:9386	si_s82	TRINITY_DN573_c0_g1	9375	9400	9386	-28.90	-22.60	0.782006920415225	12	1-8,9400-9393;9-21,9387-9375	x-x,9392-9388[BULt]	(((((((((((((.....((((((((&))))))))-----)))))))))))))	AAGAAGAAGAAAGUUAAAGAAGGAGA&UUUCUUUC-----CUUUCUUCUUCUU	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN573_c0_g1_9386_TPlot.pdf
TRINITY_DN573_c0_g1:9387	si_s81	TRINITY_DN573_c0_g1	9376	9401	9387	-28.90	-21.90	0.757785467128028	13	2-9,9400-9393;10-21,9387-9376	1-1,9401-9401[UP5];x-x,9392-9388[BULt]	((((((((((((.....((((((((.&.))))))))-----))))))))))))	AGAAGAAGAAAGUUAAAGAAGGAGAU&UUUUCUUUC-----CUUUCUUCUUCU	3	0.999999938237291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN573_c0_g1_9387_TPlot.pdf
TRINITY_DN573_c0_g1:9388	si_s80	TRINITY_DN573_c0_g1	9377	9398	9388	-28.20	-20.90	0.74113475177305	6	1-9,9398-9390;11-21,9387-9377	10-10,9389-9388[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	GAAGAAGAAAGUUAAAGAAGGA&UUUUUCUUU-CCUUUCUUCUUC	3	0.999999999945049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN573_c0_g1_9388_TPlot.pdf
TRINITY_DN573_c0_g1:9391	si_s78	TRINITY_DN573_c0_g1	9379	9400	9391	-26.20	-18.50	0.706106870229008	7	1-11,9400-9390;13-21,9387-9379	12-12,9389-9388[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AGAAGAAAGUUAAAGAAGGAGA&UUUUUUUCUUU-CCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN573_c0_g1_9391_TPlot.pdf
TRINITY_DN573_c0_g1:9392	si_s77	TRINITY_DN573_c0_g1	9380	9401	9392	-25.50	-17.40	0.68235294117647	7	2-12,9400-9390;14-21,9387-9380	1-1,9401-9401[UP5];13-13,9389-9388[AILt]	((((((((..(((((((((((.&.)))))))))))-.))))))))	GAAGAAAGUUAAAGAAGGAGAU&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN573_c0_g1_9392_TPlot.pdf
TRINITY_DN573_c0_g1:9566	si_a79	TRINITY_DN573_c0_g1	9554	9577	9566	-22.20	-15.00	0.675675675675676	7	1-5,9577-9573;6-15,9570-9561;16-21,9559-9554	x-x,9572-9571[BULt];x-x,9560-9560[BULt]	((((((.((((((((((..(((((&)))))--))))))))))-))))))	UUUCUUAAAUAAUGAAGUUGACAA&UUGUU--UUUCAUUAUU-AAGAAA	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN573_c0_g1_9566_TPlot.pdf
TRINITY_DN5742_c0_g2:1042	si_s124	TRINITY_DN5742_c0_g2	1031	1051	1042	-27.10	-17.70	0.653136531365314	7	1-7,1051-1045;9-18,1043-1034	8-8,1044-1044[SIL];19-21,1033-1031[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UUCAUUCGGCUCUGCUGUUUU&AAAAUAGAAGAGUUGAAUCAA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN5742_c0_g2_1042_TPlot.pdf
TRINITY_DN5742_c0_g2:1045	si_s121	TRINITY_DN5742_c0_g2	1034	1054	1045	-27.00	-18.00	0.666666666666667	9	4-10,1051-1045;12-21,1043-1034	1-3,1054-1052[UP5];11-11,1044-1044[SIL]	((((((((((.(((((((...&...))))))).))))))))))	AUUCGGCUCUGCUGUUUUGGU&AGAAAAAUAGAAGAGUUGAAU	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s121_TRINITY_DN5742_c0_g2_1045_TPlot.pdf
TRINITY_DN5742_c0_g2:1219	si_a244	TRINITY_DN5742_c0_g2	1208	1228	1219	-35.20	-23.40	0.664772727272727	11.5	6-12,1223-1217;14-21,1215-1208	1-5,1228-1224[UP5];13-13,1216-1216[SIL]	((((((((.(((((((.....&.....))))))).))))))))	GUGCGAUCUGGGGAUCCAUUG&AAUUCGAUCCCCCGAUUGUAU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a244_TRINITY_DN5742_c0_g2_1219_TPlot.pdf
TRINITY_DN5742_c0_g2:1638	si_s82	TRINITY_DN5742_c0_g2	1627	1647	1638	-28.90	-19.60	0.678200692041523	11	4-18,1644-1630	1-3,1647-1645[UP5];19-21,1629-1627[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCCAAGAAGAAGGGGGAGCGG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5742_c0_g2_1638_TPlot.pdf
TRINITY_DN5742_c0_g2:361	si_a603	TRINITY_DN5742_c0_g2	346	370	361	-29.80	-19.60	0.657718120805369	10	2-10,369-361;12-15,359-356;16-21,351-346	1-1,370-370[UP5];11-11,360-360[SIL];x-x,355-352[BULt]	((((((....((((.(((((((((.&.))))))))).))))----))))))	UCGAUUUUGAGGAACUGCGAGGGUA&AAUUUUCGCAAUUCC----AAUCGA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN5742_c0_g2_361_TPlot.pdf
TRINITY_DN5742_c2_g1:239	si_a783	TRINITY_DN5742_c2_g1	228	248	239	-24.70	-16.80	0.680161943319838	9	2-11,247-238;13-17,236-232	1-1,248-248[UP5];12-12,237-237[SIL];18-21,231-228[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	UAACAGAAAUAUAGGAGGGUG&AACUCUUCUAUUUUUCUAUUU	3	0.99999999999959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5742_c2_g1_239_TPlot.pdf
TRINITY_DN5745_c0_g1:1740	si_s75	TRINITY_DN5745_c0_g1	1729	1749	1740	-24.00	-16.60	0.691666666666667	10.5	4-12,1746-1738;14-21,1736-1729	1-3,1749-1747[UP5];13-13,1737-1737[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GGAAGGGGUGGAAAAAGGCGU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5745_c0_g1_1740_TPlot.pdf
TRINITY_DN5745_c0_g1:2071	si_a405	TRINITY_DN5745_c0_g1	2060	2080	2071	-19.80	-13.60	0.686868686868687	9	1-14,2080-2067	15-21,2066-2060[UP3]	.......((((((((((((((&)))))))))))))).......	UGCGUACUAAACAGAGCAAUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5745_c0_g1_2071_TPlot.pdf
TRINITY_DN5745_c0_g1:2073	si_a403	TRINITY_DN5745_c0_g1	2062	2082	2073	-22.00	-17.40	0.790909090909091	8	2-16,2081-2067	1-1,2082-2082[UP5];17-21,2066-2062[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CGUACUAAACAGAGCAAUUCG&AGAAUUGUUUUGUUUAUAUUU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5745_c0_g1_2073_TPlot.pdf
TRINITY_DN5745_c0_g1:2074	si_a402	TRINITY_DN5745_c0_g1	2063	2083	2074	-22.40	-17.40	0.776785714285714	9	3-17,2081-2067	1-2,2083-2082[UP5];18-21,2066-2063[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUACUAAACAGAGCAAUUCGA&UAGAAUUGUUUUGUUUAUAUU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5745_c0_g1_2074_TPlot.pdf
TRINITY_DN5745_c0_g1:2076	si_a400	TRINITY_DN5745_c0_g1	2065	2085	2076	-22.80	-17.40	0.763157894736842	10.5	5-19,2081-2067	1-4,2085-2082[UP5];20-21,2066-2065[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACUAAACAGAGCAAUUCGAAC&UAUAGAAUUGUUUUGUUUAUA	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN5745_c0_g1_2076_TPlot.pdf
TRINITY_DN5745_c0_g1:2077	si_a399	TRINITY_DN5745_c0_g1	2066	2086	2077	-22.60	-17.40	0.769911504424779	11.5	6-20,2081-2067	1-5,2086-2082[UP5];21-21,2066-2066[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUAAACAGAGCAAUUCGAACA&AUAUAGAAUUGUUUUGUUUAU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN5745_c0_g1_2077_TPlot.pdf
TRINITY_DN5745_c0_g1:2078	si_a398	TRINITY_DN5745_c0_g1	2067	2087	2078	-22.40	-17.30	0.772321428571429	12	7-21,2081-2067	1-6,2087-2082[UP5]	(((((((((((((((......&......)))))))))))))))	UAAACAGAGCAAUUCGAACAG&AAUAUAGAAUUGUUUUGUUUA	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN5745_c0_g1_2078_TPlot.pdf
TRINITY_DN5745_c0_g1:2079	si_a397	TRINITY_DN5745_c0_g1	2068	2088	2079	-24.00	-15.80	0.658333333333333	14	8-21,2081-2068	1-7,2088-2082[UP5]	((((((((((((((.......&.......))))))))))))))	AAACAGAGCAAUUCGAACAGA&GAAUAUAGAAUUGUUUUGUUU	4	0.999995366525886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN5745_c0_g1_2079_TPlot.pdf
TRINITY_DN5745_c0_g1:2287	si_a294	TRINITY_DN5745_c0_g1	2279	2296	2287	-28.20	-18.70	0.663120567375887	6.5	1-10,2296-2287;14-20,2286-2280	11-13,x-x[BULq];21-21,2279-2279[UP3]	.(((((((---((((((((((&))))))))))...))))))).	CGCGAAUU---UUUAAAUCCA&UGGAUUUAAAAAAGAUUCGCU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a294_TRINITY_DN5745_c0_g1_2287_TPlot.pdf
TRINITY_DN5745_c0_g1:2288	si_a293	TRINITY_DN5745_c0_g1	2280	2297	2288	-27.60	-18.80	0.681159420289855	5	1-11,2297-2287;15-21,2286-2280	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	GCGAAUU---UUUAAAUCCAG&UUGGAUUUAAAAAAGAUUCGC	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a293_TRINITY_DN5745_c0_g1_2288_TPlot.pdf
TRINITY_DN5746_c0_g1:1161	si_a637	TRINITY_DN5746_c0_g1	1150	1170	1161	-25.80	-17.20	0.666666666666667	7	2-15,1169-1156	1-1,1170-1170[UP5];16-21,1155-1150[UP3]	......((((((((((((((.&.))))))))))))))......	CAAAAUCUCAAAAAAAUCGAG&GUCGAUUUUUUUGAGUAAUAU	4	0.999999993192147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN5746_c0_g1_1161_TPlot.pdf
TRINITY_DN5747_c0_g1:1170	si_s6	TRINITY_DN5747_c0_g1	1160	1179	1170	-21.70	-15.00	0.691244239631336	7	2-12,1178-1168;14-20,1167-1161	1-1,1179-1179[UP5];13-13,x-x[BULq];21-21,1160-1160[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	AAUAGUAA-AGUAGGUAGUGG&AUAUUACUUAUUAUUACUAUA	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN5747_c0_g1_1170_TPlot.pdf
TRINITY_DN5747_c0_g1:285	si_a410	TRINITY_DN5747_c0_g1	274	294	285	-17.80	-11.70	0.657303370786517	9	4-9,291-286;11-20,284-275	1-3,294-292[UP5];10-10,285-285[SIL];21-21,274-274[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	AUUAUUUAAGUUUAAACAUUA&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5747_c0_g1_285_TPlot.pdf
TRINITY_DN5747_c0_g1:597	si_s62	TRINITY_DN5747_c0_g1	586	606	597	-26.50	-20.20	0.762264150943396	6	3-16,604-591;18-21,589-586	1-2,606-605[UP5];17-17,590-590[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAAAUAUGGAAGUUGCUAGAA&AGUUAGCAACUUCUAUUUUUU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN5747_c0_g1_597_TPlot.pdf
TRINITY_DN5747_c0_g1:935	si_a119	TRINITY_DN5747_c0_g1	923	944	935	-30.30	-20.90	0.68976897689769	9.5	1-14,944-931;16-20,928-924	15-15,930-929[AILt];21-21,923-923[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	AGUUGCCGAUGAAGCGGGUUUG&CGAGCUUGUUUUAU-AGCAAUA	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN5747_c0_g1_935_TPlot.pdf
TRINITY_DN57483_c0_g1:142	si_a557	TRINITY_DN57483_c0_g1	130	151	142	-33.40	-23.70	0.709580838323353	9.5	1-7,151-145;9-10,143-142;11-18,140-133	8-8,144-144[SIL];x-x,141-141[BULt];19-21,132-130[UP3]	...((((((((.((.(((((((&))))))).))-))))))))...	GACCGCGGGGAUGAAGAAGAGA&UUUCUUUAUC-UCCCCGUGAAU	0	0.0511752716466973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN57483_c0_g1_142_TPlot.pdf
TRINITY_DN57483_c0_g1:143	si_a556	TRINITY_DN57483_c0_g1	131	152	143	-33.40	-23.70	0.709580838323353	9.5	2-8,151-145;10-11,143-142;12-19,140-133	1-1,152-152[UP5];9-9,144-144[SIL];x-x,141-141[BULt];20-21,132-131[UP3]	..((((((((.((.(((((((.&.))))))).))-))))))))..	ACCGCGGGGAUGAAGAAGAGAA&AUUUCUUUAUC-UCCCCGUGAA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN57483_c0_g1_143_TPlot.pdf
TRINITY_DN574_c0_g1:1032	si_s695	TRINITY_DN574_c0_g1	1021	1041	1032	-24.70	-16.80	0.680161943319838	13.5	5-12,1037-1030;15-21,1027-1021	1-4,1041-1038[UP5];13-14,1029-1028[SIL]	(((((((..((((((((....&....))))))))..)))))))	GCUGGUAUUUCGGCUGGGGUG&UUAAUUAGUCGAUUUAUUAGU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN574_c0_g1_1032_TPlot.pdf
TRINITY_DN574_c0_g1:1064	si_a714	TRINITY_DN574_c0_g1	1054	1074	1064	-31.90	-22.50	0.705329153605016	4.5	1-5,1074-1070;6-14,1068-1060;16-21,1059-1054	x-x,1069-1069[BULt];15-15,x-x[BULq]	((((((-(((((((((.(((((&)))))-))))))))).))))))	CUGAGU-ACGGUUAUUCUUGGA&UCCAA-AAUAAUCGUUACUCGG	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a714_TRINITY_DN574_c0_g1_1064_TPlot.pdf
TRINITY_DN574_c0_g1:1065	si_a713	TRINITY_DN574_c0_g1	1055	1075	1065	-29.60	-19.70	0.66554054054054	5.5	2-6,1074-1070;7-15,1068-1060;17-21,1059-1055	1-1,1075-1075[UP5];x-x,1069-1069[BULt];16-16,x-x[BULq]	(((((-(((((((((.(((((.&.)))))-))))))))).)))))	UGAGU-ACGGUUAUUCUUGGAG&UUCCAA-AAUAAUCGUUACUCG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a713_TRINITY_DN574_c0_g1_1065_TPlot.pdf
TRINITY_DN574_c0_g1:1066	si_a712	TRINITY_DN574_c0_g1	1056	1076	1066	-28.20	-18.90	0.670212765957447	6.5	3-7,1074-1070;8-16,1068-1060;18-21,1059-1056	1-2,1076-1075[UP5];x-x,1069-1069[BULt];17-17,x-x[BULq]	((((-(((((((((.(((((..&..)))))-))))))))).))))	GAGU-ACGGUUAUUCUUGGAGA&AUUCCAA-AAUAAUCGUUACUC	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN574_c0_g1_1066_TPlot.pdf
TRINITY_DN574_c0_g1:2264	si_a412	TRINITY_DN574_c0_g1	2253	2273	2264	-18.30	-12.40	0.677595628415301	6	1-16,2273-2258	17-21,2257-2253[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAACAAUUUAAAUAUAAAUAA&UUGUUUAUAUUUAAAUAAAUA	4	0.999991030208567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN574_c0_g1_2264_TPlot.pdf
TRINITY_DN574_c0_g1:2266	si_a410	TRINITY_DN574_c0_g1	2255	2275	2266	-17.80	-12.60	0.707865168539326	7	3-18,2273-2258	1-2,2275-2274[UP5];19-21,2257-2255[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACAAUUUAAAUAUAAAUAAUA&UUUUGUUUAUAUUUAAAUAAA	3	0.999997166155618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN574_c0_g1_2266_TPlot.pdf
TRINITY_DN574_c0_g1:2341	si_a497	TRINITY_DN574_c0_g1	2330	2350	2341	-32.00	-22.00	0.6875	4.5	1-11,2350-2340;13-21,2338-2330	12-12,2339-2339[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AAGGAAGAUAAAAAAUGAUAU&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999692903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN574_c0_g1_2341_TPlot.pdf
TRINITY_DN574_c0_g1:2342	si_a496	TRINITY_DN574_c0_g1	2331	2351	2342	-32.40	-21.10	0.651234567901235	4.5	2-12,2350-2340;14-21,2338-2331	1-1,2351-2351[UP5];13-13,2339-2339[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	AGGAAGAUAAAAAAUGAUAUU&UAUGUCGUUUUUCGUCUUCCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN574_c0_g1_2342_TPlot.pdf
TRINITY_DN574_c0_g1:303	si_a323	TRINITY_DN574_c0_g1	293	312	303	-26.80	-17.42	0.65	8.5	1-13,312-300;18-20,296-294	14-17,299-297[AILq];21-21,293-293[UP3]	.(((...-(((((((((((((&)))))))))))))....))).	CAGGCUU-GGGAGAUCAUGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.99999999964434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN574_c0_g1_303_TPlot.pdf
TRINITY_DN574_c0_g1:307	si_a319	TRINITY_DN574_c0_g1	296	316	307	-22.40	-14.90	0.665178571428572	13	5-17,312-300	1-4,316-313[UP5];18-21,299-296[UP3]	....(((((((((((((....&....)))))))))))))....	GCUUGGGAGAUCAUGGAGAAC&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN574_c0_g1_307_TPlot.pdf
TRINITY_DN574_c0_g1:308	si_a318	TRINITY_DN574_c0_g1	297	317	308	-22.50	-14.90	0.662222222222222	14	6-18,312-300	1-5,317-313[UP5];19-21,299-297[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUUGGGAGAUCAUGGAGAACU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN574_c0_g1_308_TPlot.pdf
TRINITY_DN5751_c0_g1:1785	si_a872	TRINITY_DN5751_c0_g1	1774	1794	1785	-27.00	-17.70	0.655555555555556	9	2-16,1793-1779	1-1,1794-1794[UP5];17-21,1778-1774[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CGCCGGUAGCUAGGUCUUUAU&UUAAAGAUUUAGUUGCAAUCA	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN5751_c0_g1_1785_TPlot.pdf
TRINITY_DN5751_c0_g1:2072	si_s802	TRINITY_DN5751_c0_g1	2061	2081	2072	-26.40	-17.78	0.673484848484849	8	1-6,2081-2076;10-21,2072-2061	7-9,2075-2073[SIL]	((((((((((((...((((((&))))))...))))))))))))	AAAGGUGGCGAAAAGAAGAUA&UAUUUUAUCUUCGUUACCUUU	4	0.999999993050157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5751_c0_g1_2072_TPlot.pdf
TRINITY_DN5755_c0_g1:247	si_a322	TRINITY_DN5755_c0_g1	236	262	247	-27.00	-17.90	0.662962962962963	12.5	1-5,262-258;6-9,255-252;10-21,247-236	x-x,257-256[BULt];x-x,251-248[BULt]	((((((((((((....((((..(((((&)))))--))))----))))))))))))	AGGAAUGAAAAAUAACAUCAGUUGGAU&AUCCA--UGAU----UUUUUUAUUCCU	4	0.999999540968882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN5755_c0_g1_247_TPlot.pdf
TRINITY_DN5755_c0_g1:2626	si_a466	TRINITY_DN5755_c0_g1	2615	2635	2626	-21.50	-14.10	0.655813953488372	4	1-16,2635-2620;18-20,2618-2616	17-17,2619-2619[SIL];21-21,2615-2615[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	UCAAAAAUUAUGUAUUAUAUA&UAUAUAAUAUGUAAUUAUUGU	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN5755_c0_g1_2626_TPlot.pdf
TRINITY_DN5755_c0_g1:2628	si_a464	TRINITY_DN5755_c0_g1	2617	2637	2628	-19.60	-12.80	0.653061224489796	7.5	3-18,2635-2620	1-2,2637-2636[UP5];19-21,2619-2617[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAAAUUAUGUAUUAUAUAAU&UAUAUAUAAUAUGUAAUUAUU	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN5755_c0_g1_2628_TPlot.pdf
TRINITY_DN5756_c0_g2:321	si_a701	TRINITY_DN5756_c0_g2	310	330	321	-31.20	-21.80	0.698717948717949	9	1-2,330-329;5-13,326-318;15-18,316-313	3-4,328-327[SIL];14-14,317-317[SIL];19-21,312-310[UP3]	...((((.(((((((((..((&))..))))))))).))))...	UCGUUGGUAUGUGCCAGGGGU&ACAACUGGUACAUUCCAAAAU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN5756_c0_g2_321_TPlot.pdf
TRINITY_DN5756_c0_g2:322	si_a700	TRINITY_DN5756_c0_g2	311	331	322	-32.80	-24.30	0.740853658536585	8	1-3,331-329;6-14,326-318;16-19,316-313	4-5,328-327[SIL];15-15,317-317[SIL];20-21,312-311[UP3]	..((((.(((((((((..(((&)))..))))))))).))))..	CGUUGGUAUGUGCCAGGGGUG&CACAACUGGUACAUUCCAAAA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a700_TRINITY_DN5756_c0_g2_322_TPlot.pdf
TRINITY_DN5756_c0_g2:323	si_a699	TRINITY_DN5756_c0_g2	312	332	323	-33.60	-26.10	0.776785714285714	7	1-4,332-329;7-15,326-318;17-20,316-313	5-6,328-327[SIL];16-16,317-317[SIL];21-21,312-312[UP3]	.((((.(((((((((..((((&))))..))))))))).)))).	GUUGGUAUGUGCCAGGGGUGU&ACACAACUGGUACAUUCCAAA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a699_TRINITY_DN5756_c0_g2_323_TPlot.pdf
TRINITY_DN5756_c0_g2:324	si_a698	TRINITY_DN5756_c0_g2	313	333	324	-33.60	-26.10	0.776785714285714	7	2-5,332-329;8-16,326-318;18-21,316-313	1-1,333-333[UP5];6-7,328-327[SIL];17-17,317-317[SIL]	((((.(((((((((..((((.&.))))..))))))))).))))	UUGGUAUGUGCCAGGGGUGUA&AACACAACUGGUACAUUCCAA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a698_TRINITY_DN5756_c0_g2_324_TPlot.pdf
TRINITY_DN5756_c0_g3:2740	si_a409	TRINITY_DN5756_c0_g3	2729	2751	2740	-19.50	-12.88	0.660512820512821	9.5	1-8,2751-2744;11-20,2739-2730	9-10,2743-2740[AILt];21-21,2729-2729[UP3]	.((((((((((....((((((((&))))))))--..)))))))))).	AUGUUUAAAUAAAAUAACAAAAC&GUUUUGUU--UAUAUUUAAAUAA	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN5756_c0_g3_2740_TPlot.pdf
TRINITY_DN5756_c1_g1:780	si_a221	TRINITY_DN5756_c1_g1	769	789	780	-25.20	-16.80	0.666666666666667	8.5	1-15,789-775	16-21,774-769[UP3]	......(((((((((((((((&)))))))))))))))......	UUGACAGGGCAUGAGUUUGAU&AUUAAACUCAUGUUUCUAUAA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN5756_c1_g1_780_TPlot.pdf
TRINITY_DN5756_c1_g1:781	si_a220	TRINITY_DN5756_c1_g1	770	790	781	-25.10	-18.00	0.717131474103586	7.5	1-16,790-775	17-21,774-770[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGACAGGGCAUGAGUUUGAUU&AAUUAAACUCAUGUUUCUAUA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN5756_c1_g1_781_TPlot.pdf
TRINITY_DN5756_c1_g1:783	si_a218	TRINITY_DN5756_c1_g1	772	792	783	-26.60	-19.30	0.725563909774436	6.5	2-18,791-775	1-1,792-792[UP5];19-21,774-772[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACAGGGCAUGAGUUUGAUUAU&CUAAUUAAACUCAUGUUUCUA	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN5756_c1_g1_783_TPlot.pdf
TRINITY_DN5757_c1_g1:864	si_a646	TRINITY_DN5757_c1_g1	854	873	864	-29.40	-19.30	0.656462585034014	4	1-13,873-861;15-20,860-855	14-14,x-x[BULq];21-21,854-854[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	CUUUUCG-UGUAUUACUCAAA&UUUGAGUAAUAUAUCGGGAAA	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN5757_c1_g1_864_TPlot.pdf
TRINITY_DN5757_c1_g1:871	si_a639	TRINITY_DN5757_c1_g1	860	884	871	-23.60	-18.00	0.76271186440678	10	1-5,884-880;6-21,875-860	x-x,879-876[BULt]	((((((((((((((((....(((((&)))))----))))))))))))))))	GUGUAUUACUCAAAAAUUAUAAUUG&CGAUU----UUUUUGAGUAAUAUAU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN5757_c1_g1_871_TPlot.pdf
TRINITY_DN57584_c0_g1:115	si_s579	TRINITY_DN57584_c0_g1	103	124	115	-26.70	-19.00	0.711610486891386	5	1-6,124-119;8-16,117-109;17-19,107-105	7-7,118-118[SIL];x-x,108-108[BULt];20-21,104-103[UP3]	..(((.(((((((((.((((((&)))))).)))))))))-)))..	CUUCCAAUGAUUUUUCUAUUCC&GGAAUAAAAAAAUCAU-GGAUA	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s579_TRINITY_DN57584_c0_g1_115_TPlot.pdf
TRINITY_DN57584_c0_g1:119	si_s575	TRINITY_DN57584_c0_g1	108	128	119	-25.90	-17.00	0.656370656370656	5	1-3,128-126;5-10,124-119;12-20,117-109	4-4,125-125[SIL];11-11,118-118[SIL];21-21,108-108[UP3]	.(((((((((.((((((.(((&))).)))))).))))))))).	AAUGAUUUUUCUAUUCCAUGU&ACAAGGAAUAAAAAAAUCAUG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s575_TRINITY_DN57584_c0_g1_119_TPlot.pdf
TRINITY_DN57589_c0_g1:202	si_a335	TRINITY_DN57589_c0_g1	191	211	202	-31.10	-20.50	0.659163987138264	12	4-14,208-198;16-16,196-196	1-3,211-209[UP5];15-15,197-197[SIL];17-21,195-191[UP3]	.....(.(((((((((((...&...))))))))))).).....	GAUGAUGGGGACGAGGAAGUC&UUAUUCCUUGUCCCGAAAAUA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN57589_c0_g1_202_TPlot.pdf
TRINITY_DN57589_c0_g1:210	si_a327	TRINITY_DN57589_c0_g1	199	218	210	-28.40	-18.52	0.652112676056338	12.5	2-7,217-212;12-21,208-199	1-1,218-218[UP5];8-11,211-209[AILq]	((((((((((...-((((((.&.))))))....))))))))))	GGACGAGGAAGUC-GAAGUUG&UGAUUUUUUUAUUCCUUGUCC	4	0.999999999875884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN57589_c0_g1_210_TPlot.pdf
TRINITY_DN5758_c0_g1:1521	si_s30	TRINITY_DN5758_c0_g1	1510	1530	1521	-24.80	-20.50	0.826612903225806	6.5	1-17,1530-1514	18-21,1513-1510[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAAGGAAGAUUUAGUUGUAGU&AUUGCAACUAAAUCUUUAAUA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN5758_c0_g1_1521_TPlot.pdf
TRINITY_DN5758_c0_g1:1522	si_s29	TRINITY_DN5758_c0_g1	1511	1531	1522	-26.40	-20.80	0.787878787878788	6.5	2-18,1530-1514	1-1,1531-1531[UP5];19-21,1513-1511[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAGGAAGAUUUAGUUGUAGUA&GAUUGCAACUAAAUCUUUAAU	1	0.00123122076507931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN5758_c0_g1_1522_TPlot.pdf
TRINITY_DN5759_c0_g1:3953	si_a635	TRINITY_DN5759_c0_g1	3941	3962	3953	-26.10	-19.70	0.754789272030651	7.5	2-15,3961-3948;17-21,3945-3941	1-1,3962-3962[UP5];16-16,3947-3946[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	AUUGCGACGGAGAGAUCGGCAG&AUGUCGAUUUUUUUG-AGUAAU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN5759_c0_g1_3953_TPlot.pdf
TRINITY_DN5759_c0_g1:4005	si_s685	TRINITY_DN5759_c0_g1	3994	4014	4005	-27.80	-18.44	0.663309352517986	11.5	3-10,4012-4005;16-21,3999-3994	1-2,4014-4013[UP5];11-15,4004-4000[SIL]	((((((.....((((((((..&..)))))))).....))))))	CGACUGUCGCUGCUCAUGUCG&AAACAUGAGUUUAAUUAGUCG	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s685_TRINITY_DN5759_c0_g1_4005_TPlot.pdf
TRINITY_DN5759_c0_g1:4214	si_s806	TRINITY_DN5759_c0_g1	4202	4223	4214	-28.60	-20.40	0.713286713286713	13	4-11,4220-4213;13-20,4210-4203	1-3,4223-4221[UP5];12-12,4212-4211[AILt];21-21,4202-4202[UP3]	.((((((((..((((((((...&...))))))))-.)))))))).	UGGAAGAGGGCGACGAGGAGAU&UUAUCUUCGUU-ACCUUUUCUU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN5759_c0_g1_4214_TPlot.pdf
TRINITY_DN5759_c0_g1:4542	si_a287	TRINITY_DN5759_c0_g1	4531	4551	4542	-29.20	-19.20	0.657534246575342	10	1-6,4551-4546;8-14,4544-4538	7-7,4545-4545[SIL];15-21,4537-4531[UP3]	.......(((((((.((((((&)))))).))))))).......	AACUUCCAAGUCCAUGCGAUC&GAUCGCUUGGAUUUAAAAAAG	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN5759_c0_g1_4542_TPlot.pdf
TRINITY_DN5759_c0_g1:4544	si_a285	TRINITY_DN5759_c0_g1	4533	4553	4544	-28.30	-19.20	0.678445229681979	10.5	3-8,4551-4546;10-16,4544-4538	1-2,4553-4552[UP5];9-9,4545-4545[SIL];17-21,4537-4533[UP3]	.....(((((((.((((((..&..)))))).))))))).....	CUUCCAAGUCCAUGCGAUCGG&AAGAUCGCUUGGAUUUAAAAA	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN5759_c0_g1_4544_TPlot.pdf
TRINITY_DN5759_c0_g1:4546	si_a283	TRINITY_DN5759_c0_g1	4535	4555	4546	-28.30	-19.20	0.678445229681979	12.5	5-10,4551-4546;12-18,4544-4538	1-4,4555-4552[UP5];11-11,4545-4545[SIL];19-21,4537-4535[UP3]	...(((((((.((((((....&....)))))).)))))))...	UCCAAGUCCAUGCGAUCGGCG&AAAAGAUCGCUUGGAUUUAAA	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN5759_c0_g1_4546_TPlot.pdf
TRINITY_DN5759_c0_g1:5851	si_a59	TRINITY_DN5759_c0_g1	5840	5860	5851	-34.00	-29.30	0.861764705882353	8.5	1-17,5860-5844	18-21,5843-5840[UP3]	....(((((((((((((((((&)))))))))))))))))....	CGAAGAAGGGGGCGGGUCGGC&GUCGACUCGCUUCUUUCAAAU	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN5759_c0_g1_5851_TPlot.pdf
TRINITY_DN5759_c0_g2:110	si_s780	TRINITY_DN5759_c0_g2	98	119	110	-30.50	-20.50	0.672131147540984	9	1-7,119-113;10-15,110-105;17-21,102-98	8-9,112-111[SIL];16-16,104-103[AILt]	(((((..((((((..(((((((&)))))))..))))))-.)))))	GAGCUGAGUUUUGAUGCAGUGG&CUAUUGCUAUAAAAC-AAGCUC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s780_TRINITY_DN5759_c0_g2_110_TPlot.pdf
TRINITY_DN5759_c0_g2:2070	si_a627	TRINITY_DN5759_c0_g2	2059	2079	2070	-29.50	-22.10	0.749152542372881	6	1-21,2079-2059	NA	(((((((((((((((((((((&)))))))))))))))))))))	GAAAAAUUGAUGUGAUGUGCC&GGCGUAUUAUGUCGAUUUUUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5759_c0_g2_2070_TPlot.pdf
TRINITY_DN575_c1_g1:368	si_a412	TRINITY_DN575_c1_g1	357	377	368	-18.30	-12.50	0.683060109289617	7.5	1-5,377-373;7-20,371-358	6-6,372-372[SIL];21-21,357-357[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CAUUUAUUUGAAUGUUGAUAG&UUGUUUAUAUUUAAAUAAAUA	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN575_c1_g1_368_TPlot.pdf
TRINITY_DN5760_c0_g1:354	si_s339	TRINITY_DN5760_c0_g1	343	364	354	-35.40	-23.30	0.65819209039548	8.5	1-6,364-359;9-20,355-344	7-8,358-356[AILt];21-21,343-343[UP3]	.((((((((((((...((((((&))))))-..)))))))))))).	CUUAUCUCCUCGUCCCAUCGUG&UACGAU-UCACGGGGAGAUAAA	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s339_TRINITY_DN5760_c0_g1_354_TPlot.pdf
TRINITY_DN5761_c0_g1:1459	si_s309	TRINITY_DN5761_c0_g1	1448	1469	1459	-33.80	-23.20	0.686390532544379	7	2-8,1468-1462;9-20,1460-1449	1-1,1469-1469[UP5];x-x,1461-1461[BULt];21-21,1448-1448[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	UGAGGAGGACGGAUAUUUUUGA&GCGAAAAU-UCUGUCCUUCUUG	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN5761_c0_g1_1459_TPlot.pdf
TRINITY_DN5762_c0_g1:3119	si_a494	TRINITY_DN5762_c0_g1	3106	3128	3119	-29.50	-21.00	0.711864406779661	15	6-12,3123-3117;13-21,3114-3106	1-5,3128-3124[UP5];x-x,3116-3115[BULt]	(((((((((..(((((((.....&.....)))))))--)))))))))	GAAGACGAACAGAGCGACCUACG&AAUAUGUCGUUU--UUCGUCUUC	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN5762_c0_g1_3119_TPlot.pdf
TRINITY_DN5762_c0_g1:3759	si_a642	TRINITY_DN5762_c0_g1	3748	3768	3759	-25.90	-17.40	0.671814671814672	6.5	2-12,3767-3757;14-20,3755-3749	1-1,3768-3768[UP5];13-13,3756-3756[SIL];21-21,3748-3748[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UUGGUGUACUACUCAAAGAGG&UUUUUUUGAGUAAUAUAUCGG	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5762_c0_g1_3759_TPlot.pdf
TRINITY_DN5762_c0_g1:791	si_a84	TRINITY_DN5762_c0_g1	780	800	791	-24.90	-16.80	0.674698795180723	8	4-13,797-788;15-20,786-781	1-3,800-798[UP5];14-14,787-787[SIL];21-21,780-780[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AACCUUUACUUAAUAGUGCCU&UUUCAUUAUUAAGAAAAGGUA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN5762_c0_g1_791_TPlot.pdf
TRINITY_DN57644_c0_g1:17	si_s804	TRINITY_DN57644_c0_g1	5	26	17	-27.90	-21.00	0.752688172043011	8	3-10,24-17;12-14,15-13;15-21,11-5	1-2,26-25[UP5];11-11,16-16[SIL];x-x,12-12[BULt]	(((((((.(((.((((((((..&..)))))))).)))-)))))))	GAAGAGGAUGAGGAAGAUGACG&UUUUAUCUUCGUUA-CCUUUUC	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN57644_c0_g1_17_TPlot.pdf
TRINITY_DN5764_c1_g2:320	si_a642	TRINITY_DN5764_c1_g2	308	330	320	-25.90	-17.20	0.664092664092664	5	1-9,330-322;10-18,320-312;19-20,310-309	x-x,321-321[BULt];x-x,311-311[BULt];21-21,308-308[UP3]	.((.(((((((((.(((((((((&)))))))))-)))))))))-)).	ACGAAUAUAUUACGUCAAAAAGA&UUUUUUUGA-GUAAUAUAU-CGG	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5764_c1_g2_320_TPlot.pdf
TRINITY_DN5764_c1_g3:408	si_a642	TRINITY_DN5764_c1_g3	396	418	408	-25.90	-17.20	0.664092664092664	5	1-9,418-410;10-18,408-400;19-20,398-397	x-x,409-409[BULt];x-x,399-399[BULt];21-21,396-396[UP3]	.((.(((((((((.(((((((((&)))))))))-)))))))))-)).	ACGAAUAUAUUACGUCAAAAAGA&UUUUUUUGA-GUAAUAUAU-CGG	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN5764_c1_g3_408_TPlot.pdf
TRINITY_DN57652_c0_g1:70	si_a7	TRINITY_DN57652_c0_g1	60	79	70	-29.10	-19.20	0.65979381443299	9	2-12,78-68;14-16,67-65	1-1,79-79[UP5];13-13,x-x[BULq];17-21,64-60[UP3]	.....(((-(((((((((((.&.))))))))))).))).....	AUUCUGGC-UUCUCUUCGGUG&AAUUGAAGAGAAAGCCUAUUU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN57652_c0_g1_70_TPlot.pdf
TRINITY_DN5765_c0_g1:747	si_a498	TRINITY_DN5765_c0_g1	736	755	747	-33.50	-23.40	0.698507462686567	9.5	1-7,755-749;10-19,747-738	8-9,748-748[AILq];20-21,737-736[UP3]	..((((((((((.-(((((((&)))))))..))))))))))..	ACAGGGAGACGGC-GACGGCA&UGUCGUUUUUCGUCUUCCUUG	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN5765_c0_g1_747_TPlot.pdf
TRINITY_DN57665_c0_g1:569	si_s899	TRINITY_DN57665_c0_g1	557	578	569	-28.30	-20.20	0.713780918727915	10.5	1-11,578-568;14-17,564-561	12-13,567-565[AILt];18-21,560-557[UP3]	....((((...(((((((((((&)))))))))))-..))))....	GUUAGAGAGAAGAGGAGAAAGC&GCUUUCUCUUC-AAUUUCAAUU	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN57665_c0_g1_569_TPlot.pdf
TRINITY_DN57695_c0_g1:448	si_a275	TRINITY_DN57695_c0_g1	436	457	448	-37.00	-25.28	0.683243243243243	7.5	1-8,457-450;12-16,446-442;17-21,440-436	9-11,449-447[SIL];x-x,441-441[BULt]	(((((.(((((...((((((((&))))))))...)))))-)))))	CAAGCAGAUUUCUGCGUAGGCG&CGCCUACGAAAAGAUC-GCUUG	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a275_TRINITY_DN57695_c0_g1_448_TPlot.pdf
TRINITY_DN5771_c0_g1:2919	si_s891	TRINITY_DN5771_c0_g1	2906	2928	2919	-29.60	-19.30	0.652027027027027	7	1-11,2928-2918;13-15,2916-2914;16-17,2912-2911;18-20,2909-2907	12-12,2917-2917[SIL];x-x,2913-2913[BULt];x-x,2910-2910[BULt];21-21,2906-2906[UP3]	.(((.((.(((.(((((((((((&))))))))))).)))-))-))).	AUGACAGAAGAUAGCCUGUUUGU&AUAAAUAGGCUUUCU-CU-UCAA	4	0.999999577348245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN5771_c0_g1_2919_TPlot.pdf
TRINITY_DN5771_c0_g1:541	si_s892	TRINITY_DN5771_c0_g1	530	552	541	-29.50	-20.00	0.677966101694915	7.5	1-7,552-546;8-13,543-538;15-21,536-530	x-x,545-544[BULt];14-14,537-537[SIL]	(((((((.((((((..(((((((&)))))))--)))))).)))))))	GUUGAAGUGGAAGCAGCUGUUUA&UAAAUAG--GCUUUCUCUUCAAU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN5771_c0_g1_541_TPlot.pdf
TRINITY_DN57739_c0_g1:128	si_s63	TRINITY_DN57739_c0_g1	117	139	128	-25.80	-17.90	0.693798449612403	6.5	1-6,139-134;7-9,132-130;10-21,128-117	x-x,133-133[BULt];x-x,129-129[BULt]	((((((((((((.(((.((((((&))))))-)))-))))))))))))	AAGGAAAUAGAAUGUUAGCUGAU&GUUAGC-AAC-UUCUAUUUUUUU	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN57739_c0_g1_128_TPlot.pdf
TRINITY_DN5773_c2_g1:824	si_a110	TRINITY_DN5773_c2_g1	810	833	824	-27.80	-18.70	0.672661870503597	12	1-3,833-831;6-11,828-823;12-21,819-810	4-5,830-829[SIL];x-x,822-820[BULt]	((((((((((...((((((..(((&)))..))))))---))))))))))	AAGACGAGCUACACGUAUUGGGUC&GAUAAAAUACG---AGCUUGUUUU	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN5773_c2_g1_824_TPlot.pdf
TRINITY_DN5773_c2_g1:949	si_s803	TRINITY_DN5773_c2_g1	937	958	949	-26.00	-17.30	0.665384615384615	8.5	1-6,958-953;8-13,951-946;14-19,944-939	7-7,952-952[SIL];x-x,945-945[BULt];20-21,938-937[UP3]	..((((((.((((((.((((((&)))))).))))))-))))))..	GCGAGGUGUGCGAAGUUGAAGU&AUUUUAUCUUCGU-UACCUUUU	2	0.999999952594694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5773_c2_g1_949_TPlot.pdf
TRINITY_DN5773_c2_g1:950	si_s802	TRINITY_DN5773_c2_g1	938	959	950	-26.40	-17.30	0.65530303030303	8.5	2-7,958-953;9-14,951-946;15-20,944-939	1-1,959-959[UP5];8-8,952-952[SIL];x-x,945-945[BULt];21-21,938-938[UP3]	.((((((.((((((.((((((.&.)))))).))))))-)))))).	CGAGGUGUGCGAAGUUGAAGUU&UAUUUUAUCUUCGU-UACCUUU	2	0.999999911673373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5773_c2_g1_950_TPlot.pdf
TRINITY_DN5774_c0_g1:23	si_s79	TRINITY_DN5774_c0_g1	10	32	23	-26.20	-18.30	0.698473282442748	6	1-10,32-23;11-14,21-18;16-21,15-10	x-x,22-22[BULt];15-15,17-16[AILt]	((((((..((((.((((((((((&))))))))))-))))-.))))))	AAGAAGUUGAGGCAAAGAAAGAG&UUUUUUCUUU-CCUU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5774_c0_g1_23_TPlot.pdf
TRINITY_DN5774_c0_g1:531	si_s681	TRINITY_DN5774_c0_g1	520	540	531	-25.10	-16.50	0.657370517928287	9	2-13,539-528	1-1,540-540[UP5];14-21,527-520[UP3]	........((((((((((((.&.))))))))))))........	AUCAGGGUCUCAUGUUUCUAG&AUAGAAACAUGAGUUUAAUUA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN5774_c0_g1_531_TPlot.pdf
TRINITY_DN57768_c0_g1:123	si_a545	TRINITY_DN57768_c0_g1	112	132	123	-28.10	-18.40	0.654804270462633	7.5	1-5,132-128;8-18,125-115	6-7,127-126[SIL];19-21,114-112[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	UUUAGGAAAUAGAUCAAACCG&CGGUUCAAUCUAUUUCUUUAU	3	0.999989854832582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN57768_c0_g1_123_TPlot.pdf
TRINITY_DN57768_c0_g1:233	si_a191	TRINITY_DN57768_c0_g1	221	242	233	-32.00	-21.00	0.65625	5	2-13,241-230;15-16,228-227;17-21,225-221	1-1,242-242[UP5];14-14,229-229[SIL];x-x,226-226[BULt]	(((((.((.((((((((((((.&.)))))))))))).))-)))))	UAUUACGUUAACGGGGGAAGAA&AUCUUUCCCUGUUCAC-UAAUA	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN57768_c0_g1_233_TPlot.pdf
TRINITY_DN57778_c0_g1:63	si_s423	TRINITY_DN57778_c0_g1	51	72	63	-21.50	-16.70	0.776744186046512	5.5	3-11,70-62;12-21,60-51	1-2,72-71[UP5];x-x,61-61[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	UAGUUAUUGUAUAUAUAGAAAA&UAUUCUAUAUA-ACAAUAAUUA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN57778_c0_g1_63_TPlot.pdf
TRINITY_DN5777_c3_g1:807	si_s525	TRINITY_DN5777_c3_g1	796	816	807	-24.00	-16.90	0.704166666666667	7.5	4-13,813-804;16-21,801-796	1-3,816-814[UP5];14-15,803-802[SIL]	((((((..((((((((((...&...))))))))))..))))))	AUCAAGUUUGAUUUCGAAACU&UAAUUCGAAAUCAUUUUUGAU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN5777_c3_g1_807_TPlot.pdf
TRINITY_DN577_c0_g2:1515	si_s91	TRINITY_DN577_c0_g2	1503	1530	1515	-34.70	-23.10	0.665706051873199	13.5	1-7,1530-1524;8-13,1517-1512;14-21,1510-1503	x-x,1523-1518[BULt];x-x,1511-1511[BULt]	((((((((.((((((......(((((((&)))))))------))))))-))))))))	UCUGAAGCUGAAGAAAAUGAUGAAGAAA&UUUCUUC------UUCUUC-GCUUCGGA	4	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN577_c0_g2_1515_TPlot.pdf
TRINITY_DN577_c0_g2:1624	si_s84	TRINITY_DN577_c0_g2	1613	1633	1624	-32.30	-21.10	0.653250773993808	5	1-10,1633-1624;12-18,1622-1616	11-11,1623-1623[SIL];19-21,1615-1613[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	UACAGAAGAAAAAAGGAAAGA&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN577_c0_g2_1624_TPlot.pdf
TRINITY_DN577_c0_g2:166	si_s767	TRINITY_DN577_c0_g2	155	175	166	-28.10	-18.40	0.654804270462633	9.5	1-4,175-172;6-7,170-169;9-21,167-155	5-5,171-171[SIL];8-8,168-168[SIL]	(((((((((((((.((.((((&)))).)).)))))))))))))	GGUGGUGGUGGUUUGUGGUUG&CAACGAUUAAUUACUAUUGCU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN577_c0_g2_166_TPlot.pdf
TRINITY_DN577_c0_g2:3089	si_a601	TRINITY_DN577_c0_g2	3078	3098	3089	-30.00	-20.60	0.686666666666667	6.5	1-10,3098-3089;13-18,3086-3081;20-21,3079-3078	11-12,3088-3087[SIL];19-19,3080-3080[SIL]	((.((((((..((((((((((&))))))))))..)))))).))	GAAUGGAGUGACGAAGAUUCU&AGAAUUUUCGCAAUUCCAAUC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN577_c0_g2_3089_TPlot.pdf
TRINITY_DN577_c0_g2:855	si_a545	TRINITY_DN577_c0_g2	844	864	855	-28.10	-19.50	0.693950177935943	6.5	1-5,864-860;7-20,858-845	6-6,859-859[SIL];21-21,844-844[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CUGAAGGAGUAGAUUCAGCUG&CGGUUCAAUCUAUUUCUUUAU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN577_c0_g2_855_TPlot.pdf
TRINITY_DN577_c0_g2:856	si_a544	TRINITY_DN577_c0_g2	845	865	856	-28.90	-19.40	0.671280276816609	6.5	2-6,864-860;8-21,858-845	1-1,865-865[UP5];7-7,859-859[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UGAAGGAGUAGAUUCAGCUGU&UCGGUUCAAUCUAUUUCUUUA	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN577_c0_g2_856_TPlot.pdf
TRINITY_DN577_c0_g2:969	si_s13	TRINITY_DN577_c0_g2	958	979	969	-22.90	-16.10	0.703056768558952	8	1-8,979-972;9-18,970-961	x-x,971-971[BULt];19-21,960-958[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	AAUUCAGUGUAGUCAGUGAUAA&UUAUUAUU-ACUAUAUUGAUUG	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN577_c0_g2_969_TPlot.pdf
TRINITY_DN577_c0_g2:970	si_s12	TRINITY_DN577_c0_g2	959	980	970	-22.80	-16.30	0.714912280701754	8	2-9,979-972;10-19,970-961	1-1,980-980[UP5];x-x,971-971[BULt];20-21,960-959[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	AUUCAGUGUAGUCAGUGAUAAA&CUUAUUAUU-ACUAUAUUGAUU	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN577_c0_g2_970_TPlot.pdf
TRINITY_DN577_c0_g2:972	si_s11	TRINITY_DN577_c0_g2	960	981	972	-23.60	-16.30	0.690677966101695	9	3-10,979-972;11-20,970-961	1-2,981-980[UP5];x-x,971-971[BULt];21-21,960-960[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	UUCAGUGUAGUCAGUGAUAAAA&ACUUAUUAUU-ACUAUAUUGAU	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN577_c0_g2_972_TPlot.pdf
TRINITY_DN577_c0_g2:973	si_s10	TRINITY_DN577_c0_g2	961	982	973	-23.80	-16.20	0.680672268907563	10	4-11,979-972;12-21,970-961	1-3,982-980[UP5];x-x,971-971[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	UCAGUGUAGUCAGUGAUAAAAA&UACUUAUUAUU-ACUAUAUUGA	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN577_c0_g2_973_TPlot.pdf
TRINITY_DN5780_c0_g1:33	si_s77	TRINITY_DN5780_c0_g1	22	43	33	-25.50	-18.80	0.737254901960784	6.5	1-5,43-39;6-20,37-23	x-x,38-38[BULt];21-21,22-22[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	UAAGGAAGGGAGGAAGUAAAAA&UUUUU-UUUCUUUCCUUUCUUC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5780_c0_g1_33_TPlot.pdf
TRINITY_DN5780_c0_g1:34	si_s76	TRINITY_DN5780_c0_g1	23	44	34	-23.60	-18.80	0.796610169491525	6	2-6,43-39;7-21,37-23	1-1,44-44[UP5];x-x,38-38[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	AAGGAAGGGAGGAAGUAAAAAA&AUUUUU-UUUCUUUCCUUUCUU	0	0.33050944352639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5780_c0_g1_34_TPlot.pdf
TRINITY_DN5780_c0_g1:35	si_s75	TRINITY_DN5780_c0_g1	24	45	35	-24.00	-18.10	0.754166666666667	8	3-7,43-39;8-21,37-24	1-2,45-44[UP5];x-x,38-38[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	AGGAAGGGAGGAAGUAAAAAAG&UAUUUUU-UUUCUUUCCUUUCU	2	0.999998582666172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5780_c0_g1_35_TPlot.pdf
TRINITY_DN5780_c0_g1:36	si_s74	TRINITY_DN5780_c0_g1	25	46	36	-25.00	-18.10	0.724	7.5	1-2,46-45;4-8,43-39;9-21,37-25	3-3,44-44[SIL];x-x,38-38[BULt]	(((((((((((((.(((((.((&)).)))))-)))))))))))))	GGAAGGGAGGAAGUAAAAAAGG&CUAUUUUU-UUUCUUUCCUUUC	2	0.999998112904369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5780_c0_g1_36_TPlot.pdf
TRINITY_DN5780_c0_g1:37	si_s73	TRINITY_DN5780_c0_g1	26	48	37	-24.00	-16.40	0.683333333333333	9.5	1-3,48-46;5-9,43-39;10-21,37-26	4-4,45-44[AILt];x-x,38-38[BULt]	((((((((((((.(((((..(((&)))-.)))))-))))))))))))	GAAGGGAGGAAGUAAAAAAGGGA&UCU-AUUUUU-UUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5780_c0_g1_37_TPlot.pdf
TRINITY_DN5780_c0_g1:39	si_s72	TRINITY_DN5780_c0_g1	27	48	39	-24.10	-16.20	0.672199170124481	8	1-4,48-45;6-10,43-39;11-21,37-27	5-5,44-44[SIL];x-x,38-38[BULt]	(((((((((((.(((((.((((&)))).)))))-)))))))))))	AAGGGAGGAAGUAAAAAAGGGA&UUCUAUUUUU-UUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5780_c0_g1_39_TPlot.pdf
TRINITY_DN5780_c0_g1:84	si_s79	TRINITY_DN5780_c0_g1	73	93	84	-26.20	-17.90	0.683206106870229	5	1-6,93-88;8-13,86-81;15-21,79-73	7-7,87-87[SIL];14-14,80-80[SIL]	(((((((.((((((.((((((&)))))).)))))).)))))))	GAGGAGAUAGGAAAAAAAGAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5780_c0_g1_84_TPlot.pdf
TRINITY_DN5783_c0_g1:1727	si_a469	TRINITY_DN5783_c0_g1	1716	1736	1727	-21.10	-15.10	0.71563981042654	6	1-16,1736-1721	17-21,1720-1716[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAGGAAAUAAUUACAUGUUAU&AUAAUAUGUAAUUAUUGUUAU	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN5783_c0_g1_1727_TPlot.pdf
TRINITY_DN5783_c0_g1:1729	si_a467	TRINITY_DN5783_c0_g1	1718	1738	1729	-21.10	-15.10	0.71563981042654	7	3-18,1736-1721	1-2,1738-1737[UP5];19-21,1720-1718[UP3]	...((((((((((((((((..&..))))))))))))))))...	GGAAAUAAUUACAUGUUAUUA&AUAUAAUAUGUAAUUAUUGUU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN5783_c0_g1_1729_TPlot.pdf
TRINITY_DN5783_c0_g1:1732	si_a464	TRINITY_DN5783_c0_g1	1721	1740	1732	-19.60	-15.30	0.780612244897959	3.5	1-4,1740-1737;6-21,1736-1721	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AAUAAUUACAUGUUAU-UAUG&UAUAUAUAAUAUGUAAUUAUU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN5783_c0_g1_1732_TPlot.pdf
TRINITY_DN5783_c0_g1:1733	si_a463	TRINITY_DN5783_c0_g1	1722	1741	1733	-19.70	-14.50	0.736040609137056	5	2-5,1740-1737;7-21,1736-1722	1-1,1741-1741[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AUAAUUACAUGUUAU-UAUGC&UUAUAUAUAAUAUGUAAUUAU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5783_c0_g1_1733_TPlot.pdf
TRINITY_DN5787_c0_g2:1128	si_a728	TRINITY_DN5787_c0_g2	1117	1137	1128	-40.30	-26.70	0.662531017369727	6	2-4,1136-1134;6-11,1132-1127;13-20,1125-1118	1-1,1137-1137[UP5];5-5,1133-1133[SIL];12-12,1126-1126[SIL];21-21,1117-1117[UP3]	.((((((((.((((((.(((.&.))).)))))).)))))))).	UGGGGUAAAUAUGCCCAAGUU&UACUCGGGCAUCUUUACCCCU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN5787_c0_g2_1128_TPlot.pdf
TRINITY_DN5787_c0_g2:1129	si_a727	TRINITY_DN5787_c0_g2	1118	1138	1129	-39.70	-26.30	0.662468513853904	6	3-5,1136-1134;7-12,1132-1127;14-21,1125-1118	1-2,1138-1137[UP5];6-6,1133-1133[SIL];13-13,1126-1126[SIL]	((((((((.((((((.(((..&..))).)))))).))))))))	GGGGUAAAUAUGCCCAAGUUA&UUACUCGGGCAUCUUUACCCC	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN5787_c0_g2_1129_TPlot.pdf
TRINITY_DN5787_c0_g2:482	si_s77	TRINITY_DN5787_c0_g2	469	491	482	-25.50	-16.80	0.658823529411765	8	1-12,491-480;14-21,476-469	13-13,479-477[AILt]	((((((((...((((((((((((&))))))))))))--.))))))))	GAAGAAAGAAAAAGGAAAAAGGA&UUUUUUUUCUUU--CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5787_c0_g2_482_TPlot.pdf
TRINITY_DN57945_c0_g1:112	si_s743	TRINITY_DN57945_c0_g1	101	121	112	-29.00	-22.90	0.789655172413793	7	1-3,121-119;5-17,117-105	4-4,118-118[SIL];18-21,104-101[UP3]	....(((((((((((((.(((&))).)))))))))))))....	CUGGAAGGUCAGUCUAUACAC&GUGAAUAGAUUGACCUUAAAA	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN57945_c0_g1_112_TPlot.pdf
TRINITY_DN5794_c0_g1:248	si_s741	TRINITY_DN5794_c0_g1	237	257	248	-33.80	-22.20	0.656804733727811	9	2-10,256-248;13-20,245-238	1-1,257-257[UP5];11-12,247-246[SIL];21-21,237-237[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	GUAAGGUCAGGCUGUUUACUG&GGGUGAAUAGAUUGACCUUAA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN5794_c0_g1_248_TPlot.pdf
TRINITY_DN57956_c0_g1:184	si_s90	TRINITY_DN57956_c0_g1	172	193	184	-35.30	-23.70	0.671388101983003	7	1-11,193-183;13-15,181-179;16-21,177-172	12-12,182-182[SIL];x-x,178-178[BULt]	((((((.(((.(((((((((((&))))))))))).)))-))))))	UCGAAGACGGCGGAGGGGAAAG&CUUUCUUCUUCUUCG-CUUCGG	2	0.999999964395475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN57956_c0_g1_184_TPlot.pdf
TRINITY_DN57956_c0_g1:193	si_a494	TRINITY_DN57956_c0_g1	174	202	193	-29.50	-19.30	0.654237288135593	16.5	5-14,198-189;15-21,180-174	1-4,202-199[UP5];x-x,188-181[BULt]	(((((((........((((((((((....&....))))))))))--------)))))))	GAAGACGGCGGAGGGGAAAGCGACAAGCU&AAUAUGUCGUUUUU--------CGUCUUC	2	0.999999997781167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN57956_c0_g1_193_TPlot.pdf
TRINITY_DN5797_c0_g1:1036	si_a627	TRINITY_DN5797_c0_g1	1025	1045	1036	-29.50	-21.70	0.735593220338983	9	1-1,1045-1045;3-15,1043-1031	2-2,1044-1044[SIL];16-21,1030-1025[UP3]	......(((((((((((((.(&).)))))))))))))......	CGGUCUUCGACAUAAUGCGGC&GGCGUAUUAUGUCGAUUUUUU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN5797_c0_g1_1036_TPlot.pdf
TRINITY_DN5797_c0_g1:1782	si_s77	TRINITY_DN5797_c0_g1	1770	1791	1782	-25.50	-21.60	0.847058823529412	5.5	1-17,1791-1775;18-21,1773-1770	x-x,1774-1774[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	GAGGCGGAGGAGGGAAAAAGAA&UUUUUUUUCUUUCCUUU-CUUC	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5797_c0_g1_1782_TPlot.pdf
TRINITY_DN5797_c0_g1:1787	si_s72	TRINITY_DN5797_c0_g1	1776	1797	1787	-24.10	-17.80	0.738589211618257	8.5	1-3,1797-1795;6-21,1791-1776	4-5,1794-1792[AILt]	((((((((((((((((...(((&)))-..))))))))))))))))	GAGGAGGGAAAAAGAAAGUGAA&UUC-UAUUUUUUUUCUUUCCUU	4	0.999999999916152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5797_c0_g1_1787_TPlot.pdf
TRINITY_DN5797_c0_g1:1954	si_s82	TRINITY_DN5797_c0_g1	1943	1964	1954	-28.90	-19.90	0.688581314878893	10	1-8,1964-1957;9-9,1955-1955;12-20,1952-1944	x-x,1956-1956[BULt];10-11,1954-1953[SIL];21-21,1943-1943[UP3]	.(((((((((..(.((((((((&))))))))-)..))))))))).	CAGGAGGAGAUUGAGGAAGAGA&UUUCUUUC-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5797_c0_g1_1954_TPlot.pdf
TRINITY_DN5797_c0_g1:2151	si_s83	TRINITY_DN5797_c0_g1	2140	2161	2151	-30.90	-20.50	0.663430420711974	8.5	2-3,2160-2159;4-10,2157-2151;12-20,2149-2141	1-1,2161-2161[UP5];x-x,2158-2158[BULt];11-11,2150-2150[SIL];21-21,2140-2140[UP3]	.(((((((((.(((((((.((.&.))-))))))).))))))))).	AGAGAAGAAGCGAGGGAACGAU&UUC-UUUCCUUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5797_c0_g1_2151_TPlot.pdf
TRINITY_DN5799_c0_g1:1878	si_s416	TRINITY_DN5799_c0_g1	1866	1887	1878	-27.30	-17.90	0.655677655677656	9	4-19,1884-1869;20-21,1867-1866	1-3,1887-1885[UP5];x-x,1868-1868[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	UGAUUGUGUAGGAUAUGUUACU&AACGACAUAUUCUAUAUAA-CA	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s416_TRINITY_DN5799_c0_g1_1878_TPlot.pdf
TRINITY_DN5799_c0_g1:1881	si_s413	TRINITY_DN5799_c0_g1	1870	1890	1881	-24.80	-16.50	0.665322580645161	13.5	7-21,1884-1870	1-6,1890-1885[UP5]	(((((((((((((((......&......)))))))))))))))	UGUGUAGGAUAUGUUACUGUA&AAAAACGACAUAUUCUAUAUA	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN5799_c0_g1_1881_TPlot.pdf
TRINITY_DN579_c0_g1:303	si_s701	TRINITY_DN579_c0_g1	289	312	303	-30.50	-20.40	0.668852459016393	12	1-11,312-302;12-16,298-294;19-21,291-289	x-x,301-299[BULt];17-18,293-292[SIL]	(((..(((((...(((((((((((&)))))))))))---)))))..)))	CUGCACACUGUUUGUGAGUCGACU&AGUCGAUUUAU---UAGUGAACAG	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN579_c0_g1_303_TPlot.pdf
TRINITY_DN579_c0_g1:308	si_s696	TRINITY_DN579_c0_g1	294	317	308	-26.30	-17.40	0.661596958174905	14.5	6-16,312-302;17-21,298-294	1-5,317-313[UP5];x-x,301-299[BULt]	(((((...(((((((((((.....&.....)))))))))))---)))))	CACUGUUUGUGAGUCGACUCAACC&UAAUUAGUCGAUUUAU---UAGUG	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN579_c0_g1_308_TPlot.pdf
TRINITY_DN579_c0_g1:550	si_a757	TRINITY_DN579_c0_g1	539	565	550	-33.10	-21.90	0.661631419939577	18	1-7,565-559;8-21,552-539	x-x,558-553[BULt]	((((((((((((((......(((((((&)))))))------))))))))))))))	GGUUGGAAGCCUAGAAGGUUGGGAGGU&ACCUCCU------UUGGGUUUUUGAUU	3	0.999999995644872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN579_c0_g1_550_TPlot.pdf
TRINITY_DN579_c0_g1:660	si_s87	TRINITY_DN579_c0_g1	650	673	660	-32.90	-22.20	0.674772036474164	11	1-5,673-669;6-17,664-653;19-21,652-650	x-x,668-665[BULt];18-18,x-x[BULq]	(((-((((((((((((....(((((&)))))----)))))))))))).)))	AAG-GAAGAAGAGGAACGCCGGGAA&UUCCU----UUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN579_c0_g1_660_TPlot.pdf
TRINITY_DN579_c0_g1:661	si_s86	TRINITY_DN579_c0_g1	651	674	661	-32.90	-22.20	0.674772036474164	11	1-6,674-669;7-18,664-653;20-21,652-651	x-x,668-665[BULt];19-19,x-x[BULq]	((-((((((((((((....((((((&))))))----)))))))))))).))	AG-GAAGAAGAGGAACGCCGGGAAA&UUUCCU----UUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN579_c0_g1_661_TPlot.pdf
TRINITY_DN579_c0_g1:662	si_s85	TRINITY_DN579_c0_g1	651	675	662	-33.80	-25.20	0.745562130177515	12	1-7,675-669;8-19,664-653	x-x,668-665[BULt];20-21,652-651[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	AGGAAGAAGAGGAACGCCGGGAAAG&CUUUCCU----UUCUUCUUCUUCGC	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN579_c0_g1_662_TPlot.pdf
TRINITY_DN579_c0_g1:681	si_s76	TRINITY_DN579_c0_g1	669	690	681	-23.60	-16.30	0.690677966101695	13	6-13,685-678;14-21,676-669	1-5,690-686[UP5];x-x,677-677[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	GGGAAAGGCAGAGAAGAUUGGC&AUUUUUUUUCUUU-CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN579_c0_g1_681_TPlot.pdf
TRINITY_DN579_c0_g1:708	si_s78	TRINITY_DN579_c0_g1	697	720	708	-26.20	-21.10	0.805343511450382	10.5	2-9,719-712;10-21,708-697	1-1,720-720[UP5];x-x,711-709[BULt]	((((((((((((...((((((((.&.))))))))---))))))))))))	AGAAGAGAGGGAAAAAGAAAGGAG&UUUUUUUCU---UUCCUUUCUUCU	4	0.999969681393287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN579_c0_g1_708_TPlot.pdf
TRINITY_DN57_c0_g1:362	si_a532	TRINITY_DN57_c0_g1	350	371	362	-40.10	-26.50	0.660847880299252	5.5	1-12,371-360;15-15,357-357;16-21,355-350	13-14,359-358[SIL];x-x,356-356[BULt]	((((((.(..((((((((((((&))))))))))))..)-))))))	UUGAGCACUUUUGCUUGCGUGU&ACACGCGAGCGAUCG-GUUCAA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN57_c0_g1_362_TPlot.pdf
TRINITY_DN57_c0_g1:466	si_a467	TRINITY_DN57_c0_g1	456	475	466	-21.10	-13.80	0.654028436018957	7	2-12,474-464;14-19,463-458	1-1,475-475[UP5];13-13,x-x[BULq];20-21,457-456[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	CCCGAUGA-UACAUAUUGUGG&AUAUAAUAUGUAAUUAUUGUU	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN57_c0_g1_466_TPlot.pdf
TRINITY_DN5801_c0_g1:1315	si_a453	TRINITY_DN5801_c0_g1	1304	1324	1315	-21.10	-14.90	0.706161137440758	8.5	1-14,1324-1311	15-21,1310-1304[UP3]	.......((((((((((((((&)))))))))))))).......	UUCAUUGGUAACAACGAUUAU&AUAAUUGUUGUUAUAUAUAAU	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN5801_c0_g1_1315_TPlot.pdf
TRINITY_DN5801_c0_g1:1317	si_a451	TRINITY_DN5801_c0_g1	1306	1327	1317	-23.60	-15.60	0.661016949152542	8.5	1-2,1327-1326;3-16,1324-1311	x-x,1325-1325[BULt];17-21,1310-1306[UP3]	.....((((((((((((((.((&))-)))))))))))))).....	CAUUGGUAACAACGAUUAUACU&AG-AUAAUUGUUGUUAUAUAUA	4	0.999954185126487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN5801_c0_g1_1317_TPlot.pdf
TRINITY_DN5803_c0_g1:133	si_a624	TRINITY_DN5803_c0_g1	122	142	133	-32.30	-22.20	0.687306501547988	8.5	1-6,142-137;9-20,134-123	7-8,136-135[SIL];21-21,122-122[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CGAUCGACAUAGUUAGUUUAG&CUAGGCGUAUUAUGUCGAUUU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN5803_c0_g1_133_TPlot.pdf
TRINITY_DN5803_c0_g1:134	si_a623	TRINITY_DN5803_c0_g1	123	143	134	-33.10	-22.20	0.670694864048338	8.5	2-7,142-137;10-21,134-123	1-1,143-143[UP5];8-9,136-135[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	GAUCGACAUAGUUAGUUUAGA&ACUAGGCGUAUUAUGUCGAUU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN5803_c0_g1_134_TPlot.pdf
TRINITY_DN5803_c0_g1:460	si_s309	TRINITY_DN5803_c0_g1	444	469	460	-33.80	-22.00	0.650887573964497	15.5	1-6,469-464;8-12,462-458;13-21,452-444	7-7,463-463[SIL];x-x,457-453[BULt]	(((((((((.....(((((.((((((&)))))).)))))-----)))))))))	CAAGGAGGAGGUUGUGGAGCUUUCGC&GCGAAAAUUCUG-----UCCUUCUUG	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN5803_c0_g1_460_TPlot.pdf
TRINITY_DN5803_c0_g1:696	si_s717	TRINITY_DN5803_c0_g1	682	705	696	-30.10	-20.10	0.667774086378738	12.5	4-10,702-696;11-21,692-682	1-3,705-703[UP5];x-x,695-693[BULt]	(((((((((((...(((((((...&...)))))))---)))))))))))	UAGAUGGUGUCGAAUUUCCCUACA&AACAGGGAAA---GAUAUUAUCUA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN5803_c0_g1_696_TPlot.pdf
TRINITY_DN5803_c0_g1:839	si_s769	TRINITY_DN5803_c0_g1	828	847	839	-27.00	-17.60	0.651851851851852	8	1-5,847-843;7-18,842-831	6-6,x-x[BULq];19-21,830-828[UP3]	...((((((((((((-(((((&))))).))))))))))))...	GGUGUAGUAGUGGUU-AUCGU&ACGAUUAAUUACUAUUGCUAU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN5803_c0_g1_839_TPlot.pdf
TRINITY_DN5803_c0_g1:840	si_s768	TRINITY_DN5803_c0_g1	829	848	840	-26.80	-18.80	0.701492537313433	7	1-6,848-843;8-19,842-831	7-7,x-x[BULq];20-21,830-829[UP3]	..((((((((((((-((((((&)))))).))))))))))))..	GUGUAGUAGUGGUU-AUCGUU&AACGAUUAAUUACUAUUGCUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN5803_c0_g1_840_TPlot.pdf
TRINITY_DN5803_c0_g1:841	si_s767	TRINITY_DN5803_c0_g1	830	849	841	-28.10	-18.80	0.669039145907473	7	2-7,848-843;9-20,842-831	1-1,849-849[UP5];8-8,x-x[BULq];21-21,830-830[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	UGUAGUAGUGGUU-AUCGUUA&CAACGAUUAAUUACUAUUGCU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN5803_c0_g1_841_TPlot.pdf
TRINITY_DN5803_c0_g2:1290	si_s478	TRINITY_DN5803_c0_g2	1279	1303	1290	-27.20	-18.70	0.6875	11	1-9,1303-1295;10-20,1290-1280	x-x,1294-1291[BULt];21-21,1279-1279[UP3]	.(((((((((((....(((((((((&)))))))))----))))))))))).	GUAAAUAAAUGUGACAAGGAUUCGU&ACGGAUCCU----AUAUUUAUUUAA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN5803_c0_g2_1290_TPlot.pdf
TRINITY_DN5803_c0_g2:1295	si_s477	TRINITY_DN5803_c0_g2	1280	1304	1295	-27.10	-19.40	0.715867158671587	10	1-10,1304-1295;11-21,1290-1280	x-x,1294-1291[BULt]	(((((((((((....((((((((((&))))))))))----)))))))))))	UAAAUAAAUGUGACAAGGAUUCGUU&AACGGAUCCU----AUAUUUAUUUA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN5803_c0_g2_1295_TPlot.pdf
TRINITY_DN5803_c0_g2:68	si_a624	TRINITY_DN5803_c0_g2	57	77	68	-32.30	-22.20	0.687306501547988	8.5	1-6,77-72;9-20,69-58	7-8,71-70[SIL];21-21,57-57[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CGAUCGACAUAGUUAGUUUAG&CUAGGCGUAUUAUGUCGAUUU	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN5803_c0_g2_68_TPlot.pdf
TRINITY_DN5804_c0_g1:1909	si_a80	TRINITY_DN5804_c0_g1	1896	1918	1909	-22.10	-14.80	0.669683257918552	8.5	2-14,1917-1905;15-18,1902-1899	1-1,1918-1918[UP5];x-x,1904-1903[BULt];19-21,1898-1896[UP3]	...((((..(((((((((((((.&.)))))))))))))--))))...	UGAUCUUUCGAUAAUGGAAAGCG&UGUUUUUCAUUAUU--AAGAAAA	3	0.99999280884472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN5804_c0_g1_1909_TPlot.pdf
TRINITY_DN5804_c0_g1:1913	si_a76	TRINITY_DN5804_c0_g1	1902	1922	1913	-21.20	-14.70	0.693396226415094	11.5	4-18,1919-1905	1-3,1922-1920[UP5];19-21,1904-1902[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCGAUAAUGGAAAGCGAAGC&AAAUUGUUUUUCAUUAUUAAG	4	0.999999306351614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN5804_c0_g1_1913_TPlot.pdf
TRINITY_DN5805_c0_g1:4315	si_s296	TRINITY_DN5805_c0_g1	4304	4324	4315	-31.60	-20.78	0.657594936708861	12	1-9,4324-4316;13-17,4312-4308	10-12,4315-4313[SIL];18-21,4307-4304[UP3]	....(((((...(((((((((&)))))))))...)))))....	GUGCUCGCACAGCCAGUUGAC&GUCGAUUGGAAUUGCGAAAAU	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN5805_c0_g1_4315_TPlot.pdf
TRINITY_DN58068_c0_g1:55	si_s73	TRINITY_DN58068_c0_g1	44	64	55	-24.00	-16.30	0.679166666666667	7	1-8,64-57;10-13,55-52;16-20,49-45	9-9,56-56[SIL];14-15,51-50[SIL];21-21,44-44[UP3]	.(((((..((((.((((((((&)))))))).))))..))))).	CAAGGAUUGGAACAAAGUAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN58068_c0_g1_55_TPlot.pdf
TRINITY_DN5807_c0_g1:1096	si_s494	TRINITY_DN5807_c0_g1	1085	1105	1096	-19.80	-14.60	0.737373737373737	6	1-9,1105-1097;11-18,1095-1088	10-10,1096-1096[SIL];19-21,1087-1085[UP3]	...((((((((.(((((((((&))))))))).))))))))...	AAAGUUUUGUUAGUAUUUAAA&UUUAAAUAUAAACAAAACAAU	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN5807_c0_g1_1096_TPlot.pdf
TRINITY_DN5807_c0_g1:883	si_s489	TRINITY_DN5807_c0_g1	872	893	883	-17.90	-12.00	0.670391061452514	8	1-6,893-888;9-20,884-873	7-8,887-885[AILt];21-21,872-872[UP3]	.((((((((((((...((((((&))))))-..)))))))))))).	GUUGUUUAUAUUUUGUAUAAGU&AUUUAU-UUAAAUAUAAACAAA	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN5807_c0_g1_883_TPlot.pdf
TRINITY_DN5807_c0_g1:884	si_s488	TRINITY_DN5807_c0_g1	873	894	884	-18.30	-12.90	0.704918032786885	7	1-7,894-888;10-21,884-873	8-9,887-885[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	UUGUUUAUAUUUUGUAUAAGUA&UAUUUAU-UUAAAUAUAAACAA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN5807_c0_g1_884_TPlot.pdf
TRINITY_DN5807_c0_g1:885	si_s487	TRINITY_DN5807_c0_g1	874	895	885	-18.40	-13.10	0.71195652173913	7	1-8,895-888;11-21,884-874	9-10,887-885[AILt]	(((((((((((...((((((((&))))))))-..)))))))))))	UGUUUAUAUUUUGUAUAAGUAU&AUAUUUAU-UUAAAUAUAAACA	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN5807_c0_g1_885_TPlot.pdf
TRINITY_DN58083_c0_g1:14	si_a474	TRINITY_DN58083_c0_g1	3	24	14	-23.60	-15.90	0.673728813559322	10.5	1-7,24-18;9-20,15-4	8-8,17-16[AILt];21-21,3-3[UP3]	.((((((((((((..(((((((&)))))))-.)))))))))))).	ACUGUGUGACAGUUUGUUAUGU&AUGUAAU-UAUUGUUAUAUAGA	2	0.936110413218895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN58083_c0_g1_14_TPlot.pdf
TRINITY_DN58083_c0_g1:15	si_a473	TRINITY_DN58083_c0_g1	4	25	15	-23.00	-17.20	0.747826086956522	9.5	1-8,25-18;10-21,15-4	9-9,17-16[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	CUGUGUGACAGUUUGUUAUGUA&UAUGUAAU-UAUUGUUAUAUAG	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN58083_c0_g1_15_TPlot.pdf
TRINITY_DN58083_c0_g1:16	si_s428	TRINITY_DN58083_c0_g1	4	25	16	-21.50	-14.02	0.652093023255814	10	1-10,25-16;14-20,11-5	11-13,15-12[AILt];21-21,4-4[UP3]	.(((((((....((((((((((&))))))))))-...))))))).	CUGUGUGACAGUUUGUUAUGUA&UAUAUAACAA-UAAUUACAUAU	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN58083_c0_g1_16_TPlot.pdf
TRINITY_DN58094_c0_g1:64	si_a785	TRINITY_DN58094_c0_g1	53	73	64	-25.90	-16.98	0.655598455598456	9	1-6,73-68;10-20,64-54	7-9,67-65[SIL];21-21,53-53[UP3]	.(((((((((((...((((((&))))))...))))))))))).	UAAAAUAGAGAAUAUGGAGAG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN58094_c0_g1_64_TPlot.pdf
TRINITY_DN58094_c0_g1:65	si_a784	TRINITY_DN58094_c0_g1	54	74	65	-24.70	-16.98	0.687449392712551	8.5	2-7,73-68;11-21,64-54	1-1,74-74[UP5];8-10,67-65[SIL]	(((((((((((...((((((.&.))))))...)))))))))))	AAAAUAGAGAAUAUGGAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN58094_c0_g1_65_TPlot.pdf
TRINITY_DN58094_c0_g1:66	si_a783	TRINITY_DN58094_c0_g1	55	75	66	-24.70	-16.28	0.659109311740891	10.5	3-8,73-68;12-21,64-55	1-2,75-74[UP5];9-11,67-65[SIL]	((((((((((...((((((..&..))))))...))))))))))	AAAUAGAGAAUAUGGAGAGAA&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN58094_c0_g1_66_TPlot.pdf
TRINITY_DN580_c0_g1:2171	si_s581	TRINITY_DN580_c0_g1	2160	2180	2171	-22.40	-15.00	0.669642857142857	10.5	5-19,2176-2162	1-4,2180-2177[UP5];20-21,2161-2160[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCUGUCUGUGAUUUUUUAAAC&AAUAAAAAAAUCAUGGAUAAA	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s581_TRINITY_DN580_c0_g1_2171_TPlot.pdf
TRINITY_DN580_c0_g1:441	si_a285	TRINITY_DN580_c0_g1	430	450	441	-28.30	-18.40	0.65017667844523	12.5	3-15,448-436	1-2,450-449[UP5];16-21,435-430[UP3]	......(((((((((((((..&..)))))))))))))......	AUCGCUGAUUCAGGCGGUCGA&AAGAUCGCUUGGAUUUAAAAA	4	0.99999881361456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN580_c0_g1_441_TPlot.pdf
TRINITY_DN5810_c0_g1:424	si_a509	TRINITY_DN5810_c0_g1	413	432	424	-37.30	-24.60	0.659517426273459	7	2-6,431-427;8-9,426-425;11-21,423-413	1-1,432-432[UP5];7-7,x-x[BULq];10-10,424-424[SIL]	(((((((((((.((-(((((.&.))))).)).)))))))))))	GCCUUACAUUCGGA-GAAGGU&GUCUUCCUUGGAAUGUAAGGC	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN5810_c0_g1_424_TPlot.pdf
TRINITY_DN5810_c0_g1:793	si_s550	TRINITY_DN5810_c0_g1	782	802	793	-20.30	-15.20	0.748768472906404	5	1-3,802-800;5-18,798-785	4-4,799-799[SIL];19-21,784-782[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AUUAUAUUAAUUCUAUUGUGA&UCAAAAUAGAAUUAAUAUUUU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN5810_c0_g1_793_TPlot.pdf
TRINITY_DN5810_c0_g1:794	si_s549	TRINITY_DN5810_c0_g1	783	803	794	-20.50	-15.20	0.741463414634146	5	2-4,802-800;6-19,798-785	1-1,803-803[UP5];5-5,799-799[SIL];20-21,784-783[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	UUAUAUUAAUUCUAUUGUGAA&AUCAAAAUAGAAUUAAUAUUU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN5810_c0_g1_794_TPlot.pdf
TRINITY_DN5810_c0_g1:795	si_s548	TRINITY_DN5810_c0_g1	784	804	795	-22.50	-15.20	0.675555555555556	6	3-5,802-800;7-20,798-785	1-2,804-803[UP5];6-6,799-799[SIL];21-21,784-784[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	UAUAUUAAUUCUAUUGUGAAU&GAUCAAAAUAGAAUUAAUAUU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN5810_c0_g1_795_TPlot.pdf
TRINITY_DN5811_c4_g1:91	si_a757	TRINITY_DN5811_c4_g1	80	104	91	-33.10	-24.20	0.731117824773414	14	1-4,104-101;5-18,96-83	x-x,100-97[BULt];19-21,82-80[UP3]	...((((((((((((((....((((&))))----))))))))))))))...	CCCCGAAGACCCAAGGGUCCGGGGU&ACCU----CCUUUGGGUUUUUGAUU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5811_c4_g1_91_TPlot.pdf
TRINITY_DN5811_c4_g1:92	si_a756	TRINITY_DN5811_c4_g1	81	105	92	-33.10	-25.10	0.758308157099698	13	1-5,105-101;6-19,96-83	x-x,100-97[BULt];20-21,82-81[UP3]	..((((((((((((((....(((((&)))))----))))))))))))))..	CCCGAAGACCCAAGGGUCCGGGGUU&AACCU----CCUUUGGGUUUUUGAU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN5811_c4_g1_92_TPlot.pdf
TRINITY_DN5813_c0_g1:1872	si_s77	TRINITY_DN5813_c0_g1	1861	1881	1872	-25.50	-17.40	0.68235294117647	14	7-15,1875-1867;17-21,1865-1861	1-6,1881-1876[UP5];16-16,1866-1866[SIL]	(((((.(((((((((......&......))))))))).)))))	GAAGACAGGAAGGAGUAUAUA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5813_c0_g1_1872_TPlot.pdf
TRINITY_DN5813_c0_g1:2322	si_s88	TRINITY_DN5813_c0_g1	2310	2332	2322	-34.80	-23.40	0.672413793103448	6.5	1-7,2332-2326;8-14,2324-2318;16-16,2316-2316;17-21,2314-2310	x-x,2325-2325[BULt];15-15,2317-2317[SIL];x-x,2315-2315[BULt]	(((((.(.(((((((.(((((((&)))))))-))))))).)-)))))	GGAGCAGCAGGAGAAGGAGAGGA&UCCUUUC-UUCUUCUUC-GCUUC	3	0.999999999999863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5813_c0_g1_2322_TPlot.pdf
TRINITY_DN5813_c0_g1:2327	si_s79	TRINITY_DN5813_c0_g1	2317	2336	2327	-26.20	-17.40	0.66412213740458	11.5	5-14,2332-2323;16-20,2322-2318	1-4,2336-2333[UP5];15-15,x-x[BULq];21-21,2317-2317[UP3]	.(((((-((((((((((....&....)))))))))).))))).	CAGGAG-AAGGAGAGGAUCGC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5813_c0_g1_2327_TPlot.pdf
TRINITY_DN5813_c0_g1:2481	si_s82	TRINITY_DN5813_c0_g1	2471	2490	2481	-28.90	-20.00	0.69204152249135	6	1-11,2490-2480;13-16,2479-2476;19-21,2473-2471	12-12,x-x[BULq];17-18,2475-2474[SIL]	(((..((((-(((((((((((&))))))))))).))))..)))	AAGUUGAAG-AAGGAGAGGAA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5813_c0_g1_2481_TPlot.pdf
TRINITY_DN5813_c0_g1:2484	si_s79	TRINITY_DN5813_c0_g1	2474	2493	2484	-26.20	-17.70	0.675572519083969	10	4-14,2490-2480;16-19,2479-2476	1-3,2493-2491[UP5];15-15,x-x[BULq];20-21,2475-2474[UP3]	..((((-(((((((((((...&...))))))))))).))))..	UUGAAG-AAGGAGAGGAACAU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5813_c0_g1_2484_TPlot.pdf
TRINITY_DN5813_c0_g1:2486	si_s77	TRINITY_DN5813_c0_g1	2476	2495	2486	-25.50	-17.30	0.67843137254902	12	6-16,2490-2480;18-21,2479-2476	1-5,2495-2491[UP5];17-17,x-x[BULq]	((((-(((((((((((.....&.....))))))))))).))))	GAAG-AAGGAGAGGAACAUCG&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5813_c0_g1_2486_TPlot.pdf
TRINITY_DN5813_c0_g1:2535	si_s101	TRINITY_DN5813_c0_g1	2520	2544	2535	-32.50	-21.80	0.670769230769231	16	1-12,2544-2533;13-15,2528-2526	x-x,2532-2529[BULt];16-21,2525-2520[UP3]	......(((....((((((((((((&))))))))))))----)))......	UCGAAACCACGCUGUCCGAGGCGAA&UUCGCUUCGGAU----UGGAAAAUA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN5813_c0_g1_2535_TPlot.pdf
TRINITY_DN5813_c0_g1:2537	si_s99	TRINITY_DN5813_c0_g1	2522	2546	2537	-34.60	-26.10	0.754335260115607	9.5	1-14,2546-2533;15-17,2528-2526	x-x,2532-2529[BULt];18-21,2525-2522[UP3]	....(((....((((((((((((((&))))))))))))))----)))....	GAAACCACGCUGUCCGAGGCGAAGA&UCUUCGCUUCGGAU----UGGAAAA	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN5813_c0_g1_2537_TPlot.pdf
TRINITY_DN5813_c0_g1:2543	si_s93	TRINITY_DN5813_c0_g1	2532	2552	2543	-34.80	-28.40	0.816091954022989	6	1-4,2552-2549;7-20,2546-2533	5-6,2548-2547[SIL];21-21,2532-2532[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	UGUCCGAGGCGAAGAUUAAGA&UCUUCUUCUUCGCUUCGGAUU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5813_c0_g1_2543_TPlot.pdf
TRINITY_DN5813_c0_g1:2544	si_s92	TRINITY_DN5813_c0_g1	2533	2553	2544	-34.90	-28.80	0.825214899713467	5.5	1-5,2553-2549;8-21,2546-2533	6-7,2548-2547[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	GUCCGAGGCGAAGAUUAAGAG&UUCUUCUUCUUCGCUUCGGAU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5813_c0_g1_2544_TPlot.pdf
TRINITY_DN5813_c0_g1:2545	si_s91	TRINITY_DN5813_c0_g1	2534	2554	2545	-34.70	-28.00	0.806916426512968	6	1-6,2554-2549;9-21,2546-2534	7-8,2548-2547[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UCCGAGGCGAAGAUUAAGAGG&UUUCUUCUUCUUCGCUUCGGA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5813_c0_g1_2545_TPlot.pdf
TRINITY_DN5813_c0_g1:2546	si_s90	TRINITY_DN5813_c0_g1	2535	2555	2546	-35.30	-26.20	0.742209631728045	7.5	2-7,2554-2549;10-21,2546-2535	1-1,2555-2555[UP5];8-9,2548-2547[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	CCGAGGCGAAGAUUAAGAGGU&CUUUCUUCUUCUUCGCUUCGG	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5813_c0_g1_2546_TPlot.pdf
TRINITY_DN5813_c0_g1:2552	si_s87	TRINITY_DN5813_c0_g1	2538	2568	2552	-32.90	-21.80	0.662613981762918	23	1-9,2568-2560;10-12,2552-2550;13-21,2546-2538	x-x,2559-2553[BULt];x-x,2549-2547[BULt]	(((((((((...(((.......(((((((((&)))))))))-------)))---)))))))))	AGGCGAAGAUUAAGAGGUUGCAGGAGAGGAG&UUCCUUUCU-------UCU---UCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5813_c0_g1_2552_TPlot.pdf
TRINITY_DN5813_c0_g1:2560	si_s86	TRINITY_DN5813_c0_g1	2539	2569	2560	-32.90	-21.50	0.653495440729483	21	1-10,2569-2560;11-13,2552-2550;14-21,2546-2539	x-x,2559-2553[BULt];x-x,2549-2547[BULt]	((((((((...(((.......((((((((((&))))))))))-------)))---))))))))	GGCGAAGAUUAAGAGGUUGCAGGAGAGGAGG&UUUCCUUUCU-------UCU---UCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5813_c0_g1_2560_TPlot.pdf
TRINITY_DN5813_c0_g1:2562	si_s898	TRINITY_DN5813_c0_g1	2548	2571	2562	-30.70	-20.40	0.664495114006515	14	1-11,2571-2561;12-18,2557-2551	x-x,2560-2558[BULt];19-21,2550-2548[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	UAAGAGGUUGCAGGAGAGGAGGUC&GGCUUUCUCUU---CAAUUUCAAU	3	0.999999905516913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN5813_c0_g1_2562_TPlot.pdf
TRINITY_DN5813_c0_g1:2578	si_s80	TRINITY_DN5813_c0_g1	2560	2587	2578	-28.20	-21.20	0.75177304964539	18.5	2-12,2586-2576;13-21,2568-2560	1-1,2587-2587[UP5];x-x,2575-2569[BULt]	(((((((((.......(((((((((((.&.)))))))))))-------)))))))))	GGAGAGGAGGUCGGCUAGGAAGGAAGAG&UUUUUCUUUCCU-------UUCUUCUUC	3	0.999999995082417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5813_c0_g1_2578_TPlot.pdf
TRINITY_DN5813_c0_g1:2580	si_s78	TRINITY_DN5813_c0_g1	2562	2589	2580	-26.20	-19.50	0.744274809160305	12	2-14,2588-2576;15-21,2568-2562	1-1,2589-2589[UP5];x-x,2575-2569[BULt]	(((((((.......(((((((((((((.&.)))))))))))))-------)))))))	AGAGGAGGUCGGCUAGGAAGGAAGAGAG&UUUUUUUCUUUCCU-------UUCUUCU	3	0.999999999999445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5813_c0_g1_2580_TPlot.pdf
TRINITY_DN5813_c0_g1:2582	si_s76	TRINITY_DN5813_c0_g1	2571	2591	2582	-23.60	-17.50	0.741525423728813	8.5	2-16,2590-2576;19-20,2573-2572	1-1,2591-2591[UP5];17-18,2575-2574[SIL];21-21,2571-2571[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	CGGCUAGGAAGGAAGAGAGAC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5813_c0_g1_2582_TPlot.pdf
TRINITY_DN5813_c0_g1:2583	si_s75	TRINITY_DN5813_c0_g1	2572	2592	2583	-24.00	-17.50	0.729166666666667	9.5	3-17,2590-2576;20-21,2573-2572	1-2,2592-2591[UP5];18-19,2575-2574[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	GGCUAGGAAGGAAGAGAGACG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5813_c0_g1_2583_TPlot.pdf
TRINITY_DN5813_c0_g1:2584	si_s74	TRINITY_DN5813_c0_g1	2573	2593	2584	-25.00	-16.40	0.656	11.5	4-18,2590-2576	1-3,2593-2591[UP5];19-21,2575-2573[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCUAGGAAGGAAGAGAGACGU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5813_c0_g1_2584_TPlot.pdf
TRINITY_DN5813_c0_g1:2586	si_s72	TRINITY_DN5813_c0_g1	2575	2595	2586	-24.10	-16.40	0.680497925311203	13.5	6-20,2590-2576	1-5,2595-2591[UP5];21-21,2575-2575[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAGGAAGGAAGAGAGACGUAC&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5813_c0_g1_2586_TPlot.pdf
TRINITY_DN5813_c0_g1:2602	si_a69	TRINITY_DN5813_c0_g1	2583	2611	2602	-24.00	-15.60	0.65	21	1-11,2611-2601;12-19,2592-2585	x-x,2600-2593[BULt];20-21,2584-2583[UP3]	..((((((((........(((((((((((&)))))))))))--------))))))))..	AAGAGAGACGUACUAGGUAUUUGAAGGAA&UUCUUUCAAAU--------UGUUUUUCAU	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5813_c0_g1_2602_TPlot.pdf
TRINITY_DN5813_c0_g1:2633	si_s77	TRINITY_DN5813_c0_g1	2618	2642	2633	-25.50	-17.20	0.674509803921569	11.5	2-10,2641-2633;11-14,2629-2626;15-21,2624-2618	1-1,2642-2642[UP5];x-x,2632-2630[BULt];x-x,2625-2625[BULt]	(((((((.((((...(((((((((.&.)))))))))---))))-)))))))	GAAGAAGCGGAACGCAGAGAAGAGG&UUUUUUUUCU---UUCC-UUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5813_c0_g1_2633_TPlot.pdf
TRINITY_DN5813_c0_g1:2639	si_s812	TRINITY_DN5813_c0_g1	2628	2647	2639	-26.40	-17.20	0.651515151515151	10.5	1-5,2647-2643;7-15,2642-2634	6-6,x-x[BULq];16-21,2633-2628[UP3]	......(((((((((-(((((&))))).)))))))))......	AACGCAGAGAAGAGG-AGCGA&UCGUUACCUUUUCUUAAUAAU	4	0.999999714470959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN5813_c0_g1_2639_TPlot.pdf
TRINITY_DN5813_c0_g1:2658	si_s93	TRINITY_DN5813_c0_g1	2647	2667	2658	-34.80	-22.80	0.655172413793104	8	1-13,2667-2655;16-17,2652-2651	14-15,2654-2653[SIL];18-21,2650-2647[UP3]	....((..(((((((((((((&)))))))))))))..))....	AAUACGCCGCGAGGAAGAGGA&UCUUCUUCUUCGCUUCGGAUU	3	0.999999999999935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN5813_c0_g1_2658_TPlot.pdf
TRINITY_DN5813_c0_g1:2660	si_s91	TRINITY_DN5813_c0_g1	2649	2669	2660	-34.70	-23.60	0.680115273775216	7	2-15,2668-2655;18-19,2652-2651	1-1,2669-2669[UP5];16-17,2654-2653[SIL];20-21,2650-2649[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	UACGCCGCGAGGAAGAGGAAC&UUUCUUCUUCUUCGCUUCGGA	3	0.999999999825777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5813_c0_g1_2660_TPlot.pdf
TRINITY_DN5813_c0_g1:2661	si_s90	TRINITY_DN5813_c0_g1	2650	2670	2661	-35.30	-23.60	0.668555240793201	8	3-16,2668-2655;19-20,2652-2651	1-2,2670-2669[UP5];17-18,2654-2653[SIL];21-21,2650-2650[UP3]	.((..((((((((((((((..&..))))))))))))))..)).	ACGCCGCGAGGAAGAGGAACA&CUUUCUUCUUCUUCGCUUCGG	3	0.999999999999622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5813_c0_g1_2661_TPlot.pdf
TRINITY_DN5813_c0_g1:2662	si_s89	TRINITY_DN5813_c0_g1	2651	2677	2662	-35.30	-23.40	0.662889518413598	15.5	1-4,2677-2674;5-17,2667-2655;20-21,2652-2651	x-x,2673-2668[BULt];18-19,2654-2653[SIL]	((..(((((((((((((......((((&))))------)))))))))))))..))	CGCCGCGAGGAAGAGGAACAACAAAGG&CCUU------UCUUCUUCUUCGCUUCG	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5813_c0_g1_2662_TPlot.pdf
TRINITY_DN5813_c0_g1:2664	si_s87	TRINITY_DN5813_c0_g1	2653	2673	2664	-32.90	-22.20	0.674772036474164	12.5	6-19,2668-2655	1-5,2673-2669[UP5];20-21,2654-2653[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCGCGAGGAAGAGGAACAACA&UUCCUUUCUUCUUCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5813_c0_g1_2664_TPlot.pdf
TRINITY_DN5813_c0_g1:2688	si_s87	TRINITY_DN5813_c0_g1	2677	2701	2688	-32.90	-23.10	0.702127659574468	11	1-3,2701-2699;4-5,2697-2696;6-19,2692-2679	x-x,2698-2698[BULt];x-x,2695-2693[BULt];20-21,2678-2677[UP3]	..((((((((((((((...((.(((&)))-))---))))))))))))))..	GCGCGAAGAGGAAGAACGCAGAGAA&UUC-CU---UUCUUCUUCUUCGCUU	4	0.999999999944512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5813_c0_g1_2688_TPlot.pdf
TRINITY_DN5813_c0_g1:2689	si_s86	TRINITY_DN5813_c0_g1	2678	2702	2689	-32.90	-23.20	0.70516717325228	10.5	2-4,2701-2699;5-6,2697-2696;7-20,2692-2679	1-1,2702-2702[UP5];x-x,2698-2698[BULt];x-x,2695-2693[BULt];21-21,2678-2678[UP3]	.((((((((((((((...((.(((.&.)))-))---)))))))))))))).	CGCGAAGAGGAAGAACGCAGAGAAC&UUUC-CU---UUCUUCUUCUUCGCU	3	0.999999998922625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5813_c0_g1_2689_TPlot.pdf
TRINITY_DN5813_c0_g1:2692	si_s83	TRINITY_DN5813_c0_g1	2681	2701	2692	-30.90	-21.20	0.686084142394822	5.5	1-6,2701-2696;8-8,2694-2694;10-21,2692-2681	7-7,2695-2695[SIL];9-9,2693-2693[SIL]	((((((((((((.(.((((((&)))))).).))))))))))))	GAAGAGGAAGAACGCAGAGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999999999997082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5813_c0_g1_2692_TPlot.pdf
TRINITY_DN5813_c0_g1:2810	si_s87	TRINITY_DN5813_c0_g1	2795	2820	2810	-32.90	-22.40	0.680851063829787	9.5	1-8,2820-2813;10-14,2810-2806;15-21,2801-2795	9-9,2812-2811[AILt];x-x,2805-2802[BULt]	(((((((....(((((..((((((((&))))))))-.)))))----)))))))	GAGCGAGAGGCGGAGAUCGAAAGGAA&UUCCUUUC-UUCUUC----UUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5813_c0_g1_2810_TPlot.pdf
TRINITY_DN5813_c0_g1:2811	si_s86	TRINITY_DN5813_c0_g1	2796	2821	2811	-32.90	-21.90	0.665653495440729	9	1-9,2821-2813;11-15,2810-2806;16-21,2801-2796	10-10,2812-2811[AILt];x-x,2805-2802[BULt]	((((((....(((((..(((((((((&)))))))))-.)))))----))))))	AGCGAGAGGCGGAGAUCGAAAGGAAA&UUUCCUUUC-UUCUUC----UUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5813_c0_g1_2811_TPlot.pdf
TRINITY_DN5813_c0_g1:3656	si_a185	TRINITY_DN5813_c0_g1	3645	3665	3656	-31.70	-21.10	0.665615141955836	17	8-20,3658-3646	1-7,3665-3659[UP5];21-21,3645-3645[UP3]	.(((((((((((((.......&.......))))))))))))).	AGAGCGGGGGGAGAGAAAAGG&GAUAAUAUCUUUCCCUGUUCA	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN5813_c0_g1_3656_TPlot.pdf
TRINITY_DN5813_c0_g1:3657	si_a553	TRINITY_DN5813_c0_g1	3648	3666	3657	-33.70	-23.40	0.694362017804154	9	1-3,3666-3664;5-10,3662-3657;13-21,3656-3648	4-4,3663-3663[SIL];11-12,x-x[BULq]	(((((((((--((((((.(((&))).))))))..)))))))))	GCGGGGGGA--GAGAAAAGGA&UCUAUUUCUUUAUCUCCCCGU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN5813_c0_g1_3657_TPlot.pdf
TRINITY_DN5813_c0_g1:3658	si_a552	TRINITY_DN5813_c0_g1	3649	3667	3658	-33.10	-22.00	0.664652567975831	8.5	2-4,3666-3664;6-11,3662-3657;14-21,3656-3649	1-1,3667-3667[UP5];5-5,3663-3663[SIL];12-13,x-x[BULq]	((((((((--((((((.(((.&.))).))))))..))))))))	CGGGGGGA--GAGAAAAGGAG&AUCUAUUUCUUUAUCUCCCCG	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN5813_c0_g1_3658_TPlot.pdf
TRINITY_DN5813_c0_g1:3661	si_s74	TRINITY_DN5813_c0_g1	3650	3670	3661	-25.00	-20.70	0.828	7	1-2,3670-3669;4-21,3667-3650	3-3,3668-3668[SIL]	((((((((((((((((((.((&)).))))))))))))))))))	GGGGGGAGAGAAAAGGAGGAG&CUAUUUUUUUUCUUUCCUUUC	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5813_c0_g1_3661_TPlot.pdf
TRINITY_DN5813_c0_g1:3662	si_s71	TRINITY_DN5813_c0_g1	3651	3670	3662	-25.70	-20.60	0.801556420233463	7	1-5,3670-3666;7-21,3665-3651	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	GGGGGAGAGAAAAGG-AGGAG&CUUCUAUUUUUUUUCUUUCCU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5813_c0_g1_3662_TPlot.pdf
TRINITY_DN5813_c0_g1:3703	si_a495	TRINITY_DN5813_c0_g1	3692	3713	3703	-31.90	-22.80	0.714733542319749	8.5	2-5,3712-3709;6-10,3707-3703;12-21,3701-3692	1-1,3713-3713[UP5];x-x,3708-3708[BULt];11-11,3702-3702[SIL]	((((((((((.(((((.((((.&.))))-))))).))))))))))	GGAAGACGGACGAUGAUCGUAG&AUAUG-UCGUUUUUCGUCUUCC	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN5813_c0_g1_3703_TPlot.pdf
TRINITY_DN5813_c0_g1:3704	si_a494	TRINITY_DN5813_c0_g1	3693	3714	3704	-29.50	-19.50	0.661016949152542	10.5	3-6,3712-3709;7-11,3707-3703;13-21,3701-3693	1-2,3714-3713[UP5];x-x,3708-3708[BULt];12-12,3702-3702[SIL]	(((((((((.(((((.((((..&..))))-))))).)))))))))	GAAGACGGACGAUGAUCGUAGA&AAUAUG-UCGUUUUUCGUCUUC	4	0.99999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN5813_c0_g1_3704_TPlot.pdf
TRINITY_DN5813_c0_g1:4050	si_s822	TRINITY_DN5813_c0_g1	4039	4058	4050	-22.30	-15.20	0.681614349775785	4	1-7,4058-4052;9-20,4051-4040	8-8,x-x[BULq];21-21,4039-4039[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	UUUGUUUUUUAUU-UUAAGAA&UUCUUAAUAAUGAAAAACAAU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN5813_c0_g1_4050_TPlot.pdf
TRINITY_DN5813_c0_g1:4051	si_s821	TRINITY_DN5813_c0_g1	4040	4059	4051	-22.20	-16.00	0.720720720720721	2.5	1-8,4059-4052;10-21,4051-4040	9-9,x-x[BULq]	((((((((((((-((((((((&)))))))).))))))))))))	UUGUUUUUUAUU-UUAAGAAA&UUUCUUAAUAAUGAAAAACAA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN5813_c0_g1_4051_TPlot.pdf
TRINITY_DN5813_c0_g1:4052	si_s820	TRINITY_DN5813_c0_g1	4041	4060	4052	-22.10	-15.50	0.701357466063348	3	1-9,4060-4052;11-21,4051-4041	10-10,x-x[BULq]	(((((((((((-(((((((((&))))))))).)))))))))))	UGUUUUUUAUU-UUAAGAAAG&UUUUCUUAAUAAUGAAAAACA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN5813_c0_g1_4052_TPlot.pdf
TRINITY_DN5815_c0_g1:734	si_s683	TRINITY_DN5815_c0_g1	723	743	734	-27.00	-17.80	0.659259259259259	11.5	7-21,737-723	1-6,743-738[UP5]	(((((((((((((((......&......)))))))))))))))	ACUGAUUAAACUCAUUCCAGA&AGAAACAUGAGUUUAAUUAGU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s683_TRINITY_DN5815_c0_g1_734_TPlot.pdf
TRINITY_DN5816_c0_g2:203	si_a258	TRINITY_DN5816_c0_g2	189	212	203	-38.60	-26.22	0.679274611398964	12.5	4-14,209-199;17-21,193-189	1-3,212-210[UP5];15-16,198-194[AILt]	(((((.....(((((((((((...&...)))))))))))---..)))))	GGCGUGCAUCGUCCUCGGUGCUUA&AUUGUAUCGAGGGC---AAACGCC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN5816_c0_g2_203_TPlot.pdf
TRINITY_DN58170_c0_g1:97	si_a489	TRINITY_DN58170_c0_g1	86	106	97	-27.70	-19.40	0.700361010830325	6	1-8,106-99;10-14,97-93;16-21,91-86	9-9,98-98[SIL];15-15,92-92[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	CGGAAACCGGCAGAUUCUGUG&UAUAGAAUAUGUCGUUUUUCG	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN58170_c0_g1_97_TPlot.pdf
TRINITY_DN58194_c0_g1:574	si_s610	TRINITY_DN58194_c0_g1	563	582	574	-27.20	-17.90	0.658088235294118	7.5	2-7,581-576;10-20,574-564	1-1,582-582[UP5];8-9,575-575[AILq];21-21,563-563[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	GGUUUGGAUUUAU-AAAGGUG&AAUCUUUUUUAAAUCCAAGCG	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN58194_c0_g1_574_TPlot.pdf
TRINITY_DN5819_c1_g1:2984	si_s698	TRINITY_DN5819_c1_g1	2973	2993	2984	-27.00	-17.60	0.651851851851852	9.5	5-12,2989-2982;14-21,2980-2973	1-4,2993-2990[UP5];13-13,2981-2981[SIL]	((((((((.((((((((....&....)))))))).))))))))	UUCAUUAAAAAGUCGACAGUA&AUUAGUCGAUUUAUUAGUGAA	3	0.99970778833738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN5819_c1_g1_2984_TPlot.pdf
TRINITY_DN581_c0_g1:629	si_s607	TRINITY_DN581_c0_g1	618	638	629	-27.60	-20.80	0.753623188405797	5.5	1-14,638-625;17-20,622-619	15-16,624-623[SIL];21-21,618-618[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AUGGAACUGAAGAAGAUUUGC&GCGAAUCUUUUUUAAAUCCAA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN581_c0_g1_629_TPlot.pdf
TRINITY_DN581_c0_g1:630	si_s606	TRINITY_DN581_c0_g1	619	639	630	-28.20	-20.80	0.73758865248227	5.5	2-15,638-625;18-21,622-619	1-1,639-639[UP5];16-17,624-623[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	UGGAACUGAAGAAGAUUUGCC&AGCGAAUCUUUUUUAAAUCCA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN581_c0_g1_630_TPlot.pdf
TRINITY_DN581_c0_g1:631	si_s605	TRINITY_DN581_c0_g1	620	640	631	-27.50	-19.40	0.705454545454545	7.5	3-16,638-625;19-21,622-620	1-2,640-639[UP5];17-18,624-623[SIL]	(((..((((((((((((((..&..))))))))))))))..)))	GGAACUGAAGAAGAUUUGCCA&AAGCGAAUCUUUUUUAAAUCC	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN581_c0_g1_631_TPlot.pdf
TRINITY_DN5823_c0_g1:1619	si_a493	TRINITY_DN5823_c0_g1	1606	1628	1619	-29.50	-19.40	0.657627118644068	11.5	6-13,1623-1616;14-21,1613-1606	1-5,1628-1624[UP5];x-x,1615-1614[BULt]	((((((((..((((((((.....&.....))))))))--))))))))	AAGACGAACCGAACGACAGGUAG&GAAUAUGUCGUUU--UUCGUCUU	2	0.999946319329673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN5823_c0_g1_1619_TPlot.pdf
TRINITY_DN5823_c0_g1:1644	si_a235	TRINITY_DN5823_c0_g1	1633	1653	1644	-33.60	-22.50	0.669642857142857	9.5	2-5,1652-1649;8-10,1646-1644;12-21,1642-1633	1-1,1653-1653[UP5];6-7,1648-1647[SIL];11-11,1643-1643[SIL]	((((((((((.(((..((((.&.))))..))).))))))))))	GGGGAUCGGGAUGGGGAUAGC&UCUAUAAUCAAUUCGAUCCCC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a235_TRINITY_DN5823_c0_g1_1644_TPlot.pdf
TRINITY_DN5824_c0_g1:365	si_a485	TRINITY_DN5824_c0_g1	354	374	365	-26.60	-19.58	0.73609022556391	9	1-5,374-370;9-21,366-354	6-8,369-367[SIL]	(((((((((((((...(((((&)))))...)))))))))))))	AGGCGGCGUAUUCCAGAUGAC&GUUAUAUAGAAUAUGUCGUUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN5824_c0_g1_365_TPlot.pdf
TRINITY_DN5824_c1_g1:1032	si_a218	TRINITY_DN5824_c1_g1	1021	1041	1032	-26.60	-18.90	0.710526315789474	13.5	8-21,1034-1021	1-7,1041-1035[UP5]	((((((((((((((.......&.......))))))))))))))	UAGAAACGUGAGUUGCCAGAU&CUAAUUAAACUCAUGUUUCUA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN5824_c1_g1_1032_TPlot.pdf
TRINITY_DN5827_c0_g1:1519	si_s80	TRINITY_DN5827_c0_g1	1508	1528	1519	-28.20	-19.10	0.677304964539007	6.5	1-9,1528-1520;12-21,1517-1508	10-11,1519-1518[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GGAGAAGAAAUUGAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5827_c0_g1_1519_TPlot.pdf
TRINITY_DN5827_c0_g1:2313	si_s89	TRINITY_DN5827_c0_g1	2301	2322	2313	-35.30	-25.60	0.725212464589235	4	1-10,2322-2313;11-14,2311-2308;16-20,2306-2302	x-x,2312-2312[BULt];15-15,2307-2307[SIL];21-21,2301-2301[UP3]	.(((((.((((.((((((((((&))))))))))-)))).))))).	AGAAGCAAAGACAGAAGAAAGG&CCUUUCUUCU-UCUUCGCUUCG	2	0.996258695104733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5827_c0_g1_2313_TPlot.pdf
TRINITY_DN5827_c0_g1:2314	si_s88	TRINITY_DN5827_c0_g1	2302	2323	2314	-34.80	-26.80	0.770114942528736	3	1-11,2323-2313;12-15,2311-2308;17-21,2306-2302	x-x,2312-2312[BULt];16-16,2307-2307[SIL]	(((((.((((.(((((((((((&)))))))))))-)))).)))))	GAAGCAAAGACAGAAGAAAGGA&UCCUUUCUUCU-UCUUCGCUUC	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5827_c0_g1_2314_TPlot.pdf
TRINITY_DN5827_c0_g1:2315	si_s87	TRINITY_DN5827_c0_g1	2303	2324	2315	-32.90	-24.50	0.74468085106383	3	1-12,2324-2313;13-16,2311-2308;18-21,2306-2303	x-x,2312-2312[BULt];17-17,2307-2307[SIL]	((((.((((.((((((((((((&))))))))))))-)))).))))	AAGCAAAGACAGAAGAAAGGAA&UUCCUUUCUUCU-UCUUCGCUU	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5827_c0_g1_2315_TPlot.pdf
TRINITY_DN5827_c0_g1:2319	si_s83	TRINITY_DN5827_c0_g1	2307	2329	2319	-30.90	-21.30	0.689320388349515	5	1-6,2329-2324;7-16,2322-2313;17-20,2311-2308	x-x,2323-2323[BULt];x-x,2312-2312[BULt];21-21,2307-2307[UP3]	.((((.((((((((((.((((((&))))))-))))))))))-)))).	AAAGACAGAAGAAAGGAAAAGGA&UUCUUU-CCUUUCUUCU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5827_c0_g1_2319_TPlot.pdf
TRINITY_DN5827_c0_g1:2322	si_s80	TRINITY_DN5827_c0_g1	2310	2332	2322	-28.20	-21.80	0.773049645390071	4	1-9,2332-2324;10-19,2322-2313;20-21,2311-2310	x-x,2323-2323[BULt];x-x,2312-2312[BULt]	((.((((((((((.(((((((((&)))))))))-))))))))))-))	GACAGAAGAAAGGAAAAGGAAAA&UUUUUCUUU-CCUUUCUUCU-UC	4	0.999998448438401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5827_c0_g1_2322_TPlot.pdf
TRINITY_DN5827_c0_g1:2324	si_s79	TRINITY_DN5827_c0_g1	2312	2333	2324	-26.20	-22.30	0.851145038167939	4	1-10,2333-2324;11-20,2322-2313	x-x,2323-2323[BULt];21-21,2312-2312[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	CAGAAGAAAGGAAAAGGAAAAA&UUUUUUCUUU-CCUUUCUUCUU	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN5827_c0_g1_2324_TPlot.pdf
TRINITY_DN5827_c0_g1:2329	si_s74	TRINITY_DN5827_c0_g1	2317	2338	2329	-25.00	-16.40	0.656	7	1-2,2338-2337;5-15,2334-2324;16-21,2322-2317	3-4,2336-2335[SIL];x-x,2323-2323[BULt]	((((((.(((((((((((..((&))..)))))))))))-))))))	GAAAGGAAAAGGAAAAAGCAAG&CUAUUUUUUUUCUUU-CCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5827_c0_g1_2329_TPlot.pdf
TRINITY_DN5827_c0_g1:2361	si_s76	TRINITY_DN5827_c0_g1	2348	2370	2361	-23.60	-15.90	0.673728813559322	6	1-4,2370-2367;6-16,2365-2355;17-21,2352-2348	5-5,2366-2366[SIL];x-x,2354-2353[BULt]	(((((..(((((((((((.((((&)))).)))))))))))--)))))	GGGAAAAGGGGAAGAAAAUAAAU&AUUUUUUUUCUUUCCU--UUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5827_c0_g1_2361_TPlot.pdf
TRINITY_DN5827_c0_g1:2412	si_s480	TRINITY_DN5827_c0_g1	2401	2421	2412	-25.00	-19.30	0.772	3.5	1-15,2421-2407;18-21,2404-2401	16-17,2406-2405[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	AUUUUUGUAAAUAUAGGAUUC&GGAUCCUAUAUUUAUUUAAAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN5827_c0_g1_2412_TPlot.pdf
TRINITY_DN5830_c0_g1:144	si_s69	TRINITY_DN5830_c0_g1	133	152	144	-23.40	-17.10	0.730769230769231	5	1-6,152-147;8-20,146-134	7-7,x-x[BULq];21-21,133-133[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AGAAGAAGAAAAAU-GAGGUU&AACUUCUAUUUUUUUUCUUUC	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5830_c0_g1_144_TPlot.pdf
TRINITY_DN5830_c0_g1:145	si_s68	TRINITY_DN5830_c0_g1	134	153	145	-23.10	-16.90	0.731601731601731	5	2-7,152-147;9-21,146-134	1-1,153-153[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GAAGAAGAAAAAU-GAGGUUA&CAACUUCUAUUUUUUUUCUUU	3	0.999995576199483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5830_c0_g1_145_TPlot.pdf
TRINITY_DN5830_c0_g1:387	si_s78	TRINITY_DN5830_c0_g1	375	396	387	-26.20	-18.30	0.698473282442748	5.5	2-10,395-387;11-19,385-377	1-1,396-396[UP5];x-x,386-386[BULt];20-21,376-375[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	AAAGGAAAGGAUAAGAAAAAAG&UUUUUUUCUU-UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5830_c0_g1_387_TPlot.pdf
TRINITY_DN5830_c0_g1:388	si_s77	TRINITY_DN5830_c0_g1	376	397	388	-25.50	-20.00	0.784313725490196	4.5	1-11,397-387;12-20,385-377	x-x,386-386[BULt];21-21,376-376[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	AAGGAAAGGAUAAGAAAAAAGA&UUUUUUUUCUU-UCCUUUCUUC	3	0.999999840065999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5830_c0_g1_388_TPlot.pdf
TRINITY_DN5830_c0_g1:390	si_s75	TRINITY_DN5830_c0_g1	378	399	390	-24.00	-19.20	0.8	5.5	3-13,397-387;14-21,385-378	1-2,399-398[UP5];x-x,386-386[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GGAAAGGAUAAGAAAAAAGAAA&UAUUUUUUUUCUU-UCCUUUCU	2	0.996395813788016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5830_c0_g1_390_TPlot.pdf
TRINITY_DN5830_c0_g1:391	si_s74	TRINITY_DN5830_c0_g1	379	400	391	-25.00	-18.10	0.724	7	4-14,397-387;15-21,385-379	1-3,400-398[UP5];x-x,386-386[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GAAAGGAUAAGAAAAAAGAAAA&CUAUUUUUUUUCUU-UCCUUUC	3	0.999999999266631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5830_c0_g1_391_TPlot.pdf
TRINITY_DN5831_c5_g1:239	si_s76	TRINITY_DN5831_c5_g1	228	248	239	-23.60	-15.50	0.656779661016949	10	2-15,247-234	1-1,248-248[UP5];16-21,233-228[UP3]	......((((((((((((((.&.))))))))))))))......	AAUUGUGGAGAGAAAAAGGAA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5831_c5_g1_239_TPlot.pdf
TRINITY_DN5831_c5_g1:243	si_s72	TRINITY_DN5831_c5_g1	232	252	243	-24.10	-19.00	0.788381742738589	6.5	1-4,252-249;6-19,247-234	5-5,248-248[SIL];20-21,233-232[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GUGGAGAGAAAAAGGAAAGAA&UUCUAUUUUUUUUCUUUCCUU	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5831_c5_g1_243_TPlot.pdf
TRINITY_DN5831_c5_g1:244	si_s71	TRINITY_DN5831_c5_g1	233	253	244	-25.70	-19.20	0.747081712062257	6.5	2-5,252-249;7-20,247-234	1-1,253-253[UP5];6-6,248-248[SIL];21-21,233-233[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UGGAGAGAAAAAGGAAAGAAA&CUUCUAUUUUUUUUCUUUCCU	0	0.279777331291055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5831_c5_g1_244_TPlot.pdf
TRINITY_DN5835_c0_g1:476	si_s134	TRINITY_DN5835_c0_g1	465	484	476	-30.50	-20.60	0.675409836065574	6	1-7,484-478;10-21,476-465	8-9,477-477[AILq]	((((((((((((.-(((((((&)))))))..))))))))))))	GGGUUUUUGAUUU-UUUGACU&AGUUGAAUCAAUCAAAAACCC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s134_TRINITY_DN5835_c0_g1_476_TPlot.pdf
TRINITY_DN5836_c0_g1:439	si_a784	TRINITY_DN5836_c0_g1	427	448	439	-24.70	-16.40	0.663967611336032	10	2-11,447-438;13-19,435-429	1-1,448-448[UP5];12-12,437-436[AILt];20-21,428-427[UP3]	..(((((((..((((((((((.&.))))))))))-.)))))))..	ACAAUGGGAUUAAUAGGAGGGG&ACUCUUCUAUU-UUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5836_c0_g1_439_TPlot.pdf
TRINITY_DN5836_c0_g1:778	si_a403	TRINITY_DN5836_c0_g1	767	787	778	-22.00	-14.60	0.663636363636364	10.5	2-14,786-774	1-1,787-787[UP5];15-21,773-767[UP3]	.......(((((((((((((.&.))))))))))))).......	GACUUUCAGCAGAACAGUUCC&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5836_c0_g1_778_TPlot.pdf
TRINITY_DN5836_c0_g1:783	si_a398	TRINITY_DN5836_c0_g1	772	792	783	-22.40	-14.60	0.651785714285714	15	7-19,786-774	1-6,792-787[UP5];20-21,773-772[UP3]	..(((((((((((((......&......)))))))))))))..	UCAGCAGAACAGUUCCAGCCC&AAUAUAGAAUUGUUUUGUUUA	3	0.999999999997518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN5836_c0_g1_783_TPlot.pdf
TRINITY_DN58376_c0_g1:94	si_s191	TRINITY_DN58376_c0_g1	83	103	94	-26.60	-18.10	0.680451127819549	5	1-15,103-89;17-18,87-86;20-21,84-83	16-16,88-88[SIL];19-19,85-85[SIL]	((.((.(((((((((((((((&))))))))))))))).)).))	UAGGUGCUAGAGUAAUCGUUA&UAACGAUUAUUUUGGAAUGUA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN58376_c0_g1_94_TPlot.pdf
TRINITY_DN5837_c0_g1:1461	si_s109	TRINITY_DN5837_c0_g1	1450	1470	1461	-26.50	-20.20	0.762264150943396	9	1-15,1470-1456	16-21,1455-1450[UP3]	......(((((((((((((((&)))))))))))))))......	UCCAACUCUGUUUUCUAGUCC&GGAUUGGAAAAUAGAAAAAUA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN5837_c0_g1_1461_TPlot.pdf
TRINITY_DN5837_c0_g1:1462	si_s108	TRINITY_DN5837_c0_g1	1451	1471	1462	-27.60	-20.60	0.746376811594203	8.5	2-16,1470-1456	1-1,1471-1471[UP5];17-21,1455-1451[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CCAACUCUGUUUUCUAGUCCU&CGGAUUGGAAAAUAGAAAAAU	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN5837_c0_g1_1462_TPlot.pdf
TRINITY_DN5837_c0_g1:1463	si_s107	TRINITY_DN5837_c0_g1	1452	1472	1463	-28.50	-20.60	0.72280701754386	9.5	3-17,1470-1456	1-2,1472-1471[UP5];18-21,1455-1452[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAACUCUGUUUUCUAGUCCUG&UCGGAUUGGAAAAUAGAAAAA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s107_TRINITY_DN5837_c0_g1_1463_TPlot.pdf
TRINITY_DN5837_c0_g1:1465	si_s105	TRINITY_DN5837_c0_g1	1454	1474	1465	-30.20	-20.60	0.682119205298013	11.5	5-19,1470-1456	1-4,1474-1471[UP5];20-21,1455-1454[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACUCUGUUUUCUAGUCCUGGU&CUUCGGAUUGGAAAAUAGAAA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s105_TRINITY_DN5837_c0_g1_1465_TPlot.pdf
TRINITY_DN5837_c0_g1:1466	si_s104	TRINITY_DN5837_c0_g1	1455	1474	1466	-32.70	-21.60	0.660550458715596	9	1-3,1474-1472;6-20,1470-1456	4-5,1471-1471[AILq];21-21,1455-1455[UP3]	.(((((((((((((((.-(((&)))..))))))))))))))).	CUCUGUUUUCUAGUCCU-GGU&GCUUCGGAUUGGAAAAUAGAA	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN5837_c0_g1_1466_TPlot.pdf
TRINITY_DN58397_c0_g1:20	si_a336	TRINITY_DN58397_c0_g1	9	29	20	-31.20	-21.10	0.676282051282051	12.5	7-21,23-9	1-6,29-24[UP5]	(((((((((((((((......&......)))))))))))))))	AUGUUUUCGGGACAGUCAAAA&UAUUCCUUGUCCCGAAAAUAU	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN58397_c0_g1_20_TPlot.pdf
TRINITY_DN5839_c1_g3:107	si_a761	TRINITY_DN5839_c1_g3	93	116	107	-30.10	-19.70	0.654485049833887	8	2-14,115-103;15-21,99-93	1-1,116-116[UP5];x-x,102-100[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	AGUCAGUAAGCAAAGACCUGAAGA&CCUUUGGGUUUUUG---AUUGAUU	4	0.999999999954861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN5839_c1_g3_107_TPlot.pdf
TRINITY_DN58408_c0_g1:270	si_a406	TRINITY_DN58408_c0_g1	259	279	270	-19.80	-14.60	0.737373737373737	7.5	1-14,279-266;16-19,264-261	15-15,265-265[SIL];20-21,260-259[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UAUGAAAAUAGGCGAAGCAAU&AUUGUUUUGUUUAUAUUUAAA	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN58408_c0_g1_270_TPlot.pdf
TRINITY_DN5842_c0_g1:660	si_s82	TRINITY_DN5842_c0_g1	649	669	660	-28.90	-21.80	0.754325259515571	4	1-7,669-663;9-21,661-649	8-8,662-662[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAGGGGGAGAAAGAAAAGAAA&UUUCUUUCCUUUCUUCUUCUU	4	0.999999988827076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5842_c0_g1_660_TPlot.pdf
TRINITY_DN5842_c0_g1:731	si_a787	TRINITY_DN5842_c0_g1	721	740	731	-26.30	-18.00	0.684410646387833	6.5	1-9,740-732;11-16,730-725;19-20,723-722	10-10,731-731[SIL];17-18,724-724[AILq];21-21,721-721[UP3]	.((.-((((((.(((((((((&))))))))).))))))..)).	AGGU-GAUAGAUAAAUGGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999605671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN5842_c0_g1_731_TPlot.pdf
TRINITY_DN5844_c0_g1:1000	si_a403	TRINITY_DN5844_c0_g1	989	1012	1000	-22.00	-14.60	0.663636363636364	10.5	1-4,1012-1009;5-13,1005-997;15-21,995-989	x-x,1008-1006[BULt];14-14,996-996[SIL]	(((((((.(((((((((...((((&))))---))))))))).)))))))	AAGUGUGUACAGAGCAAGGUUUCU&AGAA---UUGUUUUGUUUAUAUUU	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN5844_c0_g1_1000_TPlot.pdf
TRINITY_DN5844_c0_g1:1024	si_a140	TRINITY_DN5844_c0_g1	1013	1033	1024	-25.20	-18.00	0.714285714285714	7.5	3-17,1031-1017	1-2,1033-1032[UP5];18-21,1016-1013[UP3]	....(((((((((((((((..&..)))))))))))))))....	GCACCAACGACGAUUAAUUUU&GUAAUUAAUCGUUGUUGUUUU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN5844_c0_g1_1024_TPlot.pdf
TRINITY_DN5844_c0_g1:1056	si_a461	TRINITY_DN5844_c0_g1	1044	1065	1056	-21.50	-14.60	0.67906976744186	7	1-15,1065-1051;16-18,1049-1047	x-x,1050-1050[BULt];19-21,1046-1044[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	AGAUACGAUAUUGUAUAUGAUA&UGUUAUAUAUAAUAU-GUAAUU	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN5844_c0_g1_1056_TPlot.pdf
TRINITY_DN5844_c0_g1:1057	si_a460	TRINITY_DN5844_c0_g1	1045	1066	1057	-21.60	-15.50	0.717592592592593	6	1-16,1066-1051;17-19,1049-1047	x-x,1050-1050[BULt];20-21,1046-1045[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	GAUACGAUAUUGUAUAUGAUAA&UUGUUAUAUAUAAUAU-GUAAU	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN5844_c0_g1_1057_TPlot.pdf
TRINITY_DN5844_c0_g1:1058	si_a459	TRINITY_DN5844_c0_g1	1046	1067	1058	-23.20	-15.50	0.668103448275862	6	2-17,1066-1051;18-20,1049-1047	1-1,1067-1067[UP5];x-x,1050-1050[BULt];21-21,1046-1046[UP3]	.(((.((((((((((((((((.&.))))))))))))))))-))).	AUACGAUAUUGUAUAUGAUAAG&GUUGUUAUAUAUAAUAU-GUAA	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN5844_c0_g1_1058_TPlot.pdf
TRINITY_DN5844_c0_g1:1059	si_a458	TRINITY_DN5844_c0_g1	1047	1068	1059	-23.80	-16.00	0.672268907563025	5.5	1-1,1068-1068;3-18,1066-1051;19-21,1049-1047	2-2,1067-1067[SIL];x-x,1050-1050[BULt]	(((.((((((((((((((((.(&).))))))))))))))))-)))	UACGAUAUUGUAUAUGAUAAGA&UGUUGUUAUAUAUAAUAU-GUA	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN5844_c0_g1_1059_TPlot.pdf
TRINITY_DN5844_c0_g1:1061	si_a456	TRINITY_DN5844_c0_g1	1050	1070	1061	-22.80	-15.00	0.657894736842105	8.5	3-3,1068-1068;5-20,1066-1051	1-2,1070-1069[UP5];4-4,1067-1067[SIL];21-21,1050-1050[UP3]	.((((((((((((((((.(..&..).)))))))))))))))).	GAUAUUGUAUAUGAUAAGAGA&AUUGUUGUUAUAUAUAAUAUG	2	0.995434295473334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN5844_c0_g1_1061_TPlot.pdf
TRINITY_DN5844_c0_g1:1062	si_a455	TRINITY_DN5844_c0_g1	1051	1071	1062	-21.10	-14.50	0.687203791469194	9.5	4-4,1068-1068;6-21,1066-1051	1-3,1071-1069[UP5];5-5,1067-1067[SIL]	((((((((((((((((.(...&...).))))))))))))))))	AUAUUGUAUAUGAUAAGAGAA&AAUUGUUGUUAUAUAUAAUAU	2	0.998717173747751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN5844_c0_g1_1062_TPlot.pdf
TRINITY_DN5844_c0_g1:41	si_a183	TRINITY_DN5844_c0_g1	30	51	41	-30.10	-19.70	0.654485049833887	7.5	1-9,51-43;10-18,41-33	x-x,42-42[BULt];19-21,32-30[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	GUGGGGGAGAGAGUAUUAUUUG&UAGAUAAUA-UCUUUCCCUGUU	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN5844_c0_g1_41_TPlot.pdf
TRINITY_DN5844_c0_g1:833	si_a406	TRINITY_DN5844_c0_g1	822	842	833	-19.80	-13.30	0.671717171717172	7.5	1-18,842-825	19-21,824-822[UP3]	...((((((((((((((((((&))))))))))))))))))...	CGAAAGUAUAGACGAAGUAAU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5844_c0_g1_833_TPlot.pdf
TRINITY_DN5844_c0_g1:834	si_a405	TRINITY_DN5844_c0_g1	823	843	834	-19.80	-13.60	0.686868686868687	7.5	2-19,842-825	1-1,843-843[UP5];20-21,824-823[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GAAAGUAUAGACGAAGUAAUG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5844_c0_g1_834_TPlot.pdf
TRINITY_DN5844_c0_g1:920	si_a142	TRINITY_DN5844_c0_g1	909	929	920	-23.50	-16.60	0.706382978723404	8.5	1-8,929-922;10-17,920-913	9-9,921-921[SIL];18-21,912-909[UP3]	....((((((((.((((((((&)))))))).))))))))....	CGGCGGCGACGAGGAUUAAUU&AAUUAAUCGUUGUUGUUUUAA	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5844_c0_g1_920_TPlot.pdf
TRINITY_DN5844_c0_g1:996	si_a407	TRINITY_DN5844_c0_g1	985	1005	996	-19.80	-13.80	0.696969696969697	10	1-9,1005-997;11-17,995-989	10-10,996-996[SIL];18-21,988-985[UP3]	....(((((((.(((((((((&))))))))).)))))))....	GAAGAAGUGUGUACAGAGCAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999920891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN5844_c0_g1_996_TPlot.pdf
TRINITY_DN5844_c0_g1:997	si_a406	TRINITY_DN5844_c0_g1	986	1006	997	-19.80	-13.80	0.696969696969697	10	2-10,1005-997;12-18,995-989	1-1,1006-1006[UP5];11-11,996-996[SIL];19-21,988-986[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	AAGAAGUGUGUACAGAGCAAG&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999998778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5844_c0_g1_997_TPlot.pdf
TRINITY_DN5844_c0_g1:998	si_a405	TRINITY_DN5844_c0_g1	987	1007	998	-19.80	-13.80	0.696969696969697	10.5	3-11,1005-997;13-19,995-989	1-2,1007-1006[UP5];12-12,996-996[SIL];20-21,988-987[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	AGAAGUGUGUACAGAGCAAGG&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5844_c0_g1_998_TPlot.pdf
TRINITY_DN5844_c0_g2:227	si_a557	TRINITY_DN5844_c0_g2	217	236	227	-33.40	-22.00	0.658682634730539	8.5	3-15,234-222;17-20,221-218	1-2,236-235[UP5];16-16,x-x[BULq];21-21,217-217[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	CUUUA-GGGGGGGUGAAGACU&UUUCUUUAUCUCCCCGUGAAU	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN5844_c0_g2_227_TPlot.pdf
TRINITY_DN5844_c0_g2:228	si_a556	TRINITY_DN5844_c0_g2	218	237	228	-33.40	-21.90	0.655688622754491	9.5	4-16,234-222;18-21,221-218	1-3,237-235[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	UUUA-GGGGGGGUGAAGACUC&AUUUCUUUAUCUCCCCGUGAA	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN5844_c0_g2_228_TPlot.pdf
TRINITY_DN5844_c0_g2:232	si_a552	TRINITY_DN5844_c0_g2	221	241	232	-33.10	-21.60	0.652567975830816	16	8-20,234-222	1-7,241-235[UP5];21-21,221-221[UP3]	.(((((((((((((.......&.......))))))))))))).	AGGGGGGGUGAAGACUCUUUU&AUCUAUUUCUUUAUCUCCCCG	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN5844_c0_g2_232_TPlot.pdf
TRINITY_DN5844_c0_g2:378	si_a460	TRINITY_DN5844_c0_g2	367	387	378	-21.60	-14.30	0.662037037037037	7.5	1-14,387-374;16-19,372-369	15-15,373-373[SIL];20-21,368-367[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GAUACGAAUUGUAUGUGAUAA&UUGUUAUAUAUAAUAUGUAAU	2	0.997154840359294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN5844_c0_g2_378_TPlot.pdf
TRINITY_DN5846_c0_g1:1202	si_a501	TRINITY_DN5846_c0_g1	1190	1211	1202	-33.50	-24.50	0.73134328358209	8.5	3-10,1209-1202;11-20,1200-1191	1-2,1211-1210[UP5];x-x,1201-1201[BULt];21-21,1190-1190[UP3]	.((((((((((.((((((((..&..))))))))-)))))))))).	GUCCGAGGAAGAACGAAGAGUA&CGUUUUUCGU-CUUCCUUGGAA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5846_c0_g1_1202_TPlot.pdf
TRINITY_DN5846_c0_g1:21	si_s437	TRINITY_DN5846_c0_g1	10	30	21	-19.70	-14.30	0.725888324873097	7.5	1-15,30-16	16-21,15-10[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUGGAUGAUAUGUAAUUGU&AUAAUUACAUAUUAUAUAUAA	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN5846_c0_g1_21_TPlot.pdf
TRINITY_DN5846_c0_g1:29	si_s429	TRINITY_DN5846_c0_g1	18	39	29	-21.10	-16.30	0.772511848341232	7.5	3-8,37-32;9-21,30-18	1-2,39-38[UP5];x-x,31-31[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	GAUAUGUAAUUGUCUGUUGUUG&AUAUAACA-AUAAUUACAUAUU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN5846_c0_g1_29_TPlot.pdf
TRINITY_DN5846_c0_g1:602	si_s95	TRINITY_DN5846_c0_g1	592	611	602	-36.30	-23.90	0.658402203856749	6	1-10,611-602;11-17,600-594;20-21,593-592	x-x,601-601[BULt];18-19,x-x[BULq]	((--(((((((.((((((((((&))))))))))-)))))))..))	CC--UCCGAAGAUGAAGAGGAA&UUCUUCUUCG-CUUCGGAUUGG	3	0.999996082177535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN5846_c0_g1_602_TPlot.pdf
TRINITY_DN5846_c0_g1:765	si_s81	TRINITY_DN5846_c0_g1	749	775	765	-28.90	-19.50	0.674740484429066	16	1-9,775-767;10-11,765-764;12-21,758-749	x-x,766-766[BULt];x-x,763-759[BULt]	((((((((((.....((.(((((((((&)))))))))-))-----))))))))))	AGAGGAGGAAUUUAUGGUGAAAGAGGA&UUUUCUUUC-CU-----UUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN5846_c0_g1_765_TPlot.pdf
TRINITY_DN5846_c0_g1:767	si_s80	TRINITY_DN5846_c0_g1	750	776	767	-28.20	-18.40	0.652482269503546	17	2-10,775-767;11-12,765-764;13-21,758-750	1-1,776-776[UP5];x-x,766-766[BULt];x-x,763-759[BULt]	(((((((((.....((.(((((((((.&.)))))))))-))-----)))))))))	GAGGAGGAAUUUAUGGUGAAAGAGGAU&UUUUUCUUUC-CU-----UUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5846_c0_g1_767_TPlot.pdf
TRINITY_DN5846_c1_g1:516	si_a313	TRINITY_DN5846_c1_g1	505	525	516	-28.70	-20.30	0.707317073170732	6.5	1-9,525-517;11-13,515-513;15-21,511-505	10-10,516-516[SIL];14-14,512-512[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	AAGAUCAAGGGGAAGUCCAGG&CUUGGAUUUAUCCAUGAUUUU	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN5846_c1_g1_516_TPlot.pdf
TRINITY_DN5847_c1_g2:684	si_a70	TRINITY_DN5847_c1_g2	673	693	684	-23.90	-15.80	0.661087866108787	10.5	4-18,690-676	1-3,693-691[UP5];19-21,675-673[UP3]	...(((((((((((((((...&...)))))))))))))))...	GGAGGAAAACGGUUUGAACAA&UCUUUCAAAUUGUUUUUCAUU	4	0.999999999992811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN5847_c1_g2_684_TPlot.pdf
TRINITY_DN5848_c0_g1:404	si_s86	TRINITY_DN5848_c0_g1	393	413	404	-32.90	-22.30	0.677811550151976	8	1-6,413-408;9-19,405-395	7-8,407-406[SIL];20-21,394-393[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	AAUGAAGAAGAAGUUAGGAGG&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5848_c0_g1_404_TPlot.pdf
TRINITY_DN5848_c0_g1:405	si_s85	TRINITY_DN5848_c0_g1	394	414	405	-33.80	-25.00	0.739644970414201	7.5	1-7,414-408;10-20,405-395	8-9,407-406[SIL];21-21,394-394[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	AUGAAGAAGAAGUUAGGAGGG&CUUUCCUUUCUUCUUCUUCGC	4	0.999740549237147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5848_c0_g1_405_TPlot.pdf
TRINITY_DN5848_c0_g1:406	si_s84	TRINITY_DN5848_c0_g1	395	415	406	-32.30	-25.00	0.773993808049536	8	2-8,414-408;11-20,405-396	1-1,415-415[UP5];9-10,407-406[SIL];21-21,395-395[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	UGAAGAAGAAGUUAGGAGGGU&UCUUUCCUUUCUUCUUCUUCG	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN5848_c0_g1_406_TPlot.pdf
TRINITY_DN5848_c0_g1:759	si_a455	TRINITY_DN5848_c0_g1	748	768	759	-21.10	-15.00	0.710900473933649	8	2-15,767-754	1-1,768-768[UP5];16-21,753-748[UP3]	......((((((((((((((.&.))))))))))))))......	CUUUAUUAUAUAACGACAAUG&AAUUGUUGUUAUAUAUAAUAU	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN5848_c0_g1_759_TPlot.pdf
TRINITY_DN5848_c0_g1:760	si_a454	TRINITY_DN5848_c0_g1	749	769	760	-21.30	-15.00	0.704225352112676	9	3-16,767-754	1-2,769-768[UP5];17-21,753-749[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUAUUAUAUAACGACAAUGA&UAAUUGUUGUUAUAUAUAAUA	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN5848_c0_g1_760_TPlot.pdf
TRINITY_DN5848_c0_g1:761	si_a453	TRINITY_DN5848_c0_g1	750	770	761	-21.10	-15.00	0.710900473933649	10	4-17,767-754	1-3,770-768[UP5];18-21,753-750[UP3]	....((((((((((((((...&...))))))))))))))....	UUAUUAUAUAACGACAAUGAA&AUAAUUGUUGUUAUAUAUAAU	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN5848_c0_g1_761_TPlot.pdf
TRINITY_DN5848_c0_g1:764	si_a450	TRINITY_DN5848_c0_g1	753	774	764	-25.20	-18.00	0.714285714285714	7	1-5,774-770;7-20,767-754	6-6,769-768[AILt];21-21,753-753[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	UUAUAUAACGACAAUGAAUUUC&GAGAU-AAUUGUUGUUAUAUAU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN5848_c0_g1_764_TPlot.pdf
TRINITY_DN584_c0_g1:370	si_a753	TRINITY_DN584_c0_g1	359	379	370	-33.10	-22.20	0.670694864048338	10	3-7,377-373;9-19,371-361	1-2,379-378[UP5];8-8,372-372[SIL];20-21,360-359[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	UUGGACCUGGAGGCGGUUCUU&AUGAACCUCCUUUGGGUUUUU	3	0.999960616924559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN584_c0_g1_370_TPlot.pdf
TRINITY_DN584_c0_g1:450	si_a757	TRINITY_DN584_c0_g1	441	459	450	-33.10	-22.70	0.685800604229607	7.5	1-14,459-446;17-20,445-442	15-16,x-x[BULq];21-21,441-441[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	CAUCA--GACCUGGAGGGGGU&ACCUCCUUUGGGUUUUUGAUU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN584_c0_g1_450_TPlot.pdf
TRINITY_DN584_c0_g1:455	si_a752	TRINITY_DN584_c0_g1	444	464	455	-34.80	-23.00	0.660919540229885	11	5-20,460-445	1-4,464-461[UP5];21-21,444-444[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAGACCUGGAGGGGGUUAUUU&CAUGAACCUCCUUUGGGUUUU	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN584_c0_g1_455_TPlot.pdf
TRINITY_DN584_c0_g1:564	si_a23	TRINITY_DN584_c0_g1	552	573	564	-22.80	-16.20	0.710526315789474	5.5	1-15,573-559;16-19,557-554	x-x,558-558[BULt];20-21,553-552[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	AUUUGGAAACUGAAGAUAAAUA&UAUUUAUUUUUAGUU-CUAAGA	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN584_c0_g1_564_TPlot.pdf
TRINITY_DN584_c0_g1:566	si_a21	TRINITY_DN584_c0_g1	554	575	566	-24.30	-18.70	0.769547325102881	4	2-17,574-559;18-21,557-554	1-1,575-575[UP5];x-x,558-558[BULt]	((((.((((((((((((((((.&.))))))))))))))))-))))	UUGGAAACUGAAGAUAAAUAGU&CCUAUUUAUUUUUAGUU-CUAA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN584_c0_g1_566_TPlot.pdf
TRINITY_DN584_c0_g1:567	si_a20	TRINITY_DN584_c0_g1	555	576	567	-26.70	-17.80	0.666666666666667	6	3-18,574-559;19-21,557-555	1-2,576-575[UP5];x-x,558-558[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	UGGAAACUGAAGAUAAAUAGUA&GCCUAUUUAUUUUUAGUU-CUA	3	0.999999403778522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN584_c0_g1_567_TPlot.pdf
TRINITY_DN584_c0_g1:570	si_a17	TRINITY_DN584_c0_g1	559	579	570	-24.30	-16.10	0.662551440329218	10	6-21,574-559	1-5,579-575[UP5]	((((((((((((((((.....&.....))))))))))))))))	AACUGAAGAUAAAUAGUAAUU&AAAGCCUAUUUAUUUUUAGUU	4	0.999999991802264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN584_c0_g1_570_TPlot.pdf
TRINITY_DN584_c0_g1:82	si_a398	TRINITY_DN584_c0_g1	71	91	82	-22.40	-16.60	0.741071428571429	7.5	4-17,88-75;19-21,73-71	1-3,91-89[UP5];18-18,74-74[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UGAUCAGAGCAAUUCUAUCAC&AAUAUAGAAUUGUUUUGUUUA	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN584_c0_g1_82_TPlot.pdf
TRINITY_DN584_c0_g1:83	si_a397	TRINITY_DN584_c0_g1	72	92	83	-24.00	-15.60	0.65	11	5-18,88-75	1-4,92-89[UP5];19-21,74-72[UP3]	...((((((((((((((....&....))))))))))))))...	GAUCAGAGCAAUUCUAUCACU&GAAUAUAGAAUUGUUUUGUUU	4	0.999999855519305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN584_c0_g1_83_TPlot.pdf
TRINITY_DN58520_c0_g1:21	si_s413	TRINITY_DN58520_c0_g1	10	30	21	-24.80	-20.60	0.830645161290323	8	4-20,27-11	1-3,30-28[UP5];21-21,10-10[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGUAUAGGAUAUGUUGUUGUU&AAAAACGACAUAUUCUAUAUA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN58520_c0_g1_21_TPlot.pdf
TRINITY_DN5852_c0_g1:2080	si_a289	TRINITY_DN5852_c0_g1	2069	2089	2080	-28.20	-18.70	0.663120567375887	9	1-12,2089-2078	13-21,2077-2069[UP3]	.........((((((((((((&)))))))))))).........	AGCAUUAAGAAAUCCAAGCGA&UCGCUUGGAUUUAAAAAAGAU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN5852_c0_g1_2080_TPlot.pdf
TRINITY_DN5852_c0_g1:2089	si_a301	TRINITY_DN5852_c0_g1	2078	2098	2089	-27.80	-19.20	0.690647482014388	15	9-21,2090-2078	1-8,2098-2091[UP5]	(((((((((((((........&........)))))))))))))	AAAUCCAAGCGAAAAUUAGGU&AAAAAAGAUUCGCUUGGAUUU	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN5852_c0_g1_2089_TPlot.pdf
TRINITY_DN5853_c0_g1:2019	si_a784	TRINITY_DN5853_c0_g1	2008	2028	2019	-24.70	-18.40	0.744939271255061	7	2-15,2027-2014;17-21,2012-2008	1-1,2028-2028[UP5];16-16,2013-2013[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AGAAUUGGAGAAUGGAGGGGA&ACUCUUCUAUUUUUCUAUUUU	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5853_c0_g1_2019_TPlot.pdf
TRINITY_DN5853_c0_g1:2027	si_a72	TRINITY_DN5853_c0_g1	2016	2036	2027	-21.90	-14.30	0.65296803652968	10	3-9,2034-2028;11-19,2026-2018	1-2,2036-2035[UP5];10-10,2027-2027[SIL];20-21,2017-2016[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	AGAAUGGAGGGGAAUUUGAUU&UUUCAAAUUGUUUUUCAUUAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN5853_c0_g1_2027_TPlot.pdf
TRINITY_DN5853_c0_g1:2699	si_s558	TRINITY_DN5853_c0_g1	2688	2708	2699	-28.20	-19.70	0.698581560283688	5.5	1-15,2708-2694;17-20,2692-2689	16-16,2693-2693[SIL];21-21,2688-2688[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	AUGUUGUGGGGAUAUUAAUUC&GAAUUAAUAUUUUCGGGACAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN5853_c0_g1_2699_TPlot.pdf
TRINITY_DN5853_c0_g1:2700	si_s557	TRINITY_DN5853_c0_g1	2689	2709	2700	-28.80	-20.90	0.725694444444444	4	1-16,2709-2694;18-21,2692-2689	17-17,2693-2693[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UGUUGUGGGGAUAUUAAUUCU&AGAAUUAAUAUUUUCGGGACA	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN5853_c0_g1_2700_TPlot.pdf
TRINITY_DN5853_c0_g1:2702	si_s555	TRINITY_DN5853_c0_g1	2691	2711	2702	-26.90	-18.70	0.695167286245353	4.5	1-18,2711-2694;20-21,2692-2691	19-19,2693-2693[SIL]	((.((((((((((((((((((&)))))))))))))))))).))	UUGUGGGGAUAUUAAUUCUGU&AUAGAAUUAAUAUUUUCGGGA	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN5853_c0_g1_2702_TPlot.pdf
TRINITY_DN5853_c0_g1:2703	si_s554	TRINITY_DN5853_c0_g1	2692	2712	2703	-25.90	-18.60	0.718146718146718	4.5	1-19,2712-2694;21-21,2692-2692	20-20,2693-2693[SIL]	(.(((((((((((((((((((&))))))))))))))))))).)	UGUGGGGAUAUUAAUUCUGUU&AAUAGAAUUAAUAUUUUCGGG	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN5853_c0_g1_2703_TPlot.pdf
TRINITY_DN5853_c0_g1:2704	si_s553	TRINITY_DN5853_c0_g1	2693	2713	2704	-23.50	-18.30	0.778723404255319	5	2-20,2712-2694	1-1,2713-2713[UP5];21-21,2693-2693[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	GUGGGGAUAUUAAUUCUGUUA&AAAUAGAAUUAAUAUUUUCGG	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN5853_c0_g1_2704_TPlot.pdf
TRINITY_DN5853_c0_g1:2706	si_s551	TRINITY_DN5853_c0_g1	2695	2715	2706	-21.30	-17.40	0.816901408450704	7.5	4-21,2712-2695	1-3,2715-2713[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGGGAUAUUAAUUCUGUUAGU&CAAAAUAGAAUUAAUAUUUUC	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN5853_c0_g1_2706_TPlot.pdf
TRINITY_DN5853_c0_g1:2707	si_s550	TRINITY_DN5853_c0_g1	2696	2716	2707	-20.30	-15.30	0.753694581280788	9.5	5-21,2712-2696	1-4,2716-2713[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGGAUAUUAAUUCUGUUAGUA&UCAAAAUAGAAUUAAUAUUUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN5853_c0_g1_2707_TPlot.pdf
TRINITY_DN5853_c0_g1:2708	si_s549	TRINITY_DN5853_c0_g1	2697	2717	2708	-20.50	-14.80	0.721951219512195	11	6-21,2712-2697	1-5,2717-2713[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAUAUUAAUUCUGUUAGUAU&AUCAAAAUAGAAUUAAUAUUU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN5853_c0_g1_2708_TPlot.pdf
TRINITY_DN5853_c0_g1:2790	si_a292	TRINITY_DN5853_c0_g1	2779	2799	2790	-26.70	-17.96	0.672659176029963	11.5	1-7,2799-2793;12-20,2788-2780	8-11,2792-2789[SIL];21-21,2779-2779[UP3]	.(((((((((....(((((((&)))))))....))))))))).	AGGAUCUUUUGAACGUCCAGG&CUUGGAUUUAAAAAAGAUUCG	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a292_TRINITY_DN5853_c0_g1_2790_TPlot.pdf
TRINITY_DN5853_c0_g1:2791	si_a291	TRINITY_DN5853_c0_g1	2780	2800	2791	-27.70	-19.66	0.709747292418773	11	1-8,2800-2793;13-21,2788-2780	9-12,2792-2789[SIL]	(((((((((....((((((((&))))))))....)))))))))	GGAUCUUUUGAACGUCCAGGU&GCUUGGAUUUAAAAAAGAUUC	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN5853_c0_g1_2791_TPlot.pdf
TRINITY_DN5853_c0_g1:3379	si_a451	TRINITY_DN5853_c0_g1	3368	3389	3379	-23.60	-16.90	0.716101694915254	8	2-7,3388-3383;8-20,3381-3369	1-1,3389-3389[UP5];x-x,3382-3382[BULt];21-21,3368-3368[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	AGUGUGUGACAAUGCAUUAUCG&AGAUAAU-UGUUGUUAUAUAUA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN5853_c0_g1_3379_TPlot.pdf
TRINITY_DN5854_c0_g1:3287	si_a441	TRINITY_DN5854_c0_g1	3276	3297	3287	-29.30	-20.20	0.689419795221843	6	1-5,3297-3293;6-10,3291-3287;12-21,3285-3276	x-x,3292-3292[BULt];11-11,3286-3286[SIL]	((((((((((.(((((.(((((&)))))-))))).))))))))))	AACAAUUAUCAUGUAUACCAAC&GUUGG-AUAUGAGAUAAUUGUU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN5854_c0_g1_3287_TPlot.pdf
TRINITY_DN5854_c0_g1:3288	si_a440	TRINITY_DN5854_c0_g1	3277	3298	3288	-30.80	-21.20	0.688311688311688	6	1-6,3298-3293;7-11,3291-3287;13-21,3285-3277	x-x,3292-3292[BULt];12-12,3286-3286[SIL]	(((((((((.(((((.((((((&))))))-))))).)))))))))	ACAAUUAUCAUGUAUACCAACG&CGUUGG-AUAUGAGAUAAUUGU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN5854_c0_g1_3288_TPlot.pdf
TRINITY_DN5854_c0_g1:925	si_s76	TRINITY_DN5854_c0_g1	914	935	925	-23.60	-17.90	0.758474576271186	6	1-6,935-930;7-11,928-924;13-21,922-914	x-x,929-929[BULt];12-12,923-923[SIL]	(((((((((.(((((.((((((&))))))-))))).)))))))))	GAGAGAGGAUGGAAACAAAAAU&AUUUUU-UUUCUUUCCUUUCUU	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5854_c0_g1_925_TPlot.pdf
TRINITY_DN5854_c0_g1:926	si_s75	TRINITY_DN5854_c0_g1	915	936	926	-24.00	-16.80	0.7	5.5	2-7,935-930;8-12,928-924;14-21,922-915	1-1,936-936[UP5];x-x,929-929[BULt];13-13,923-923[SIL]	((((((((.(((((.((((((.&.))))))-))))).))))))))	AGAGAGGAUGGAAACAAAAAUU&UAUUUUU-UUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5854_c0_g1_926_TPlot.pdf
TRINITY_DN58593_c0_g1:280	si_s72	TRINITY_DN58593_c0_g1	269	289	280	-24.10	-16.74	0.694605809128631	10	1-4,289-286;10-21,280-269	5-9,285-281[SIL]	((((((((((((.....((((&)))).....))))))))))))	AAGGAAAGAAAAUACAGAGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999999804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN58593_c0_g1_280_TPlot.pdf
TRINITY_DN5859_c0_g1:512	si_s610	TRINITY_DN5859_c0_g1	501	520	512	-27.20	-18.40	0.676470588235294	9	2-8,519-513;12-20,510-502	1-1,520-520[UP5];9-11,512-511[AILq];21-21,501-501[UP3]	.(((((((((..-(((((((.&.)))))))...))))))))).	AGCUUGGAUUCU-AAAGGAUG&AAUCUUUUUUAAAUCCAAGCG	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN5859_c0_g1_512_TPlot.pdf
TRINITY_DN585_c0_g1:1005	si_a787	TRINITY_DN585_c0_g1	993	1014	1005	-26.30	-17.70	0.673003802281369	8.5	1-2,1014-1013;4-12,1011-1003;15-21,999-993	3-3,1012-1012[SIL];13-14,1002-1000[AILt]	(((((((...(((((((((.((&)).)))))))))-..)))))))	UGGAAGAGGUGAAAAAUGGUGG&CUUCUAUUUUUC-UAUUUUCCA	3	0.999999999996899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN585_c0_g1_1005_TPlot.pdf
TRINITY_DN585_c0_g1:1215	si_a758	TRINITY_DN585_c0_g1	1204	1224	1215	-34.00	-22.40	0.658823529411765	8.5	1-10,1224-1215;13-16,1212-1209;18-20,1207-1205	11-12,1214-1213[SIL];17-17,1208-1208[SIL];21-21,1204-1204[UP3]	.(((.((((..((((((((((&))))))))))..)))).))).	AGAUGGAGAUACUAAAGGAGG&CCUCCUUUGGGUUUUUGAUUG	2	0.99996527576803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN585_c0_g1_1215_TPlot.pdf
TRINITY_DN585_c0_g1:1216	si_a757	TRINITY_DN585_c0_g1	1205	1225	1216	-33.10	-22.40	0.676737160120846	7.5	2-11,1224-1215;14-17,1212-1209;19-21,1207-1205	1-1,1225-1225[UP5];12-13,1214-1213[SIL];18-18,1208-1208[SIL]	(((.((((..((((((((((.&.))))))))))..)))).)))	GAUGGAGAUACUAAAGGAGGA&ACCUCCUUUGGGUUUUUGAUU	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN585_c0_g1_1216_TPlot.pdf
TRINITY_DN585_c0_g1:2009	si_s803	TRINITY_DN585_c0_g1	1998	2018	2009	-26.00	-17.30	0.665384615384615	12	4-8,2015-2011;10-18,2009-2001	1-3,2018-2016[UP5];9-9,2010-2010[SIL];19-21,2000-1998[UP3]	...(((((((((.(((((...&...))))).)))))))))...	AUUAGGUAACGAUGGUGACAC&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN585_c0_g1_2009_TPlot.pdf
TRINITY_DN585_c0_g1:2010	si_s802	TRINITY_DN585_c0_g1	1999	2019	2010	-26.40	-17.30	0.65530303030303	13	5-9,2015-2011;11-19,2009-2001	1-4,2019-2016[UP5];10-10,2010-2010[SIL];20-21,2000-1999[UP3]	..(((((((((.(((((....&....))))).)))))))))..	UUAGGUAACGAUGGUGACACU&UAUUUUAUCUUCGUUACCUUU	3	0.999999999996498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN585_c0_g1_2010_TPlot.pdf
TRINITY_DN585_c0_g1:2568	si_s553	TRINITY_DN585_c0_g1	2556	2578	2568	-23.50	-15.70	0.668085106382979	8.5	3-9,2576-2570;10-11,2568-2567;12-21,2565-2556	1-2,2578-2577[UP5];x-x,2569-2569[BULt];x-x,2566-2566[BULt]	((((((((((.((.(((((((..&..)))))))-))-))))))))))	CCGAAAAUGUAUACAUUCUGUGU&AAAUAGAAU-UA-AUAUUUUCGG	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN585_c0_g1_2568_TPlot.pdf
TRINITY_DN585_c0_g1:779	si_a324	TRINITY_DN585_c0_g1	771	788	779	-27.50	-18.10	0.658181818181818	7	1-4,788-785;6-12,783-777;16-21,776-771	5-5,784-784[SIL];13-15,x-x[BULq]	((((((---(((((((.((((&)))).)))))))...))))))	CAAGGA---GAAAAAUGGUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.999997333137613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN585_c0_g1_779_TPlot.pdf
TRINITY_DN5860_c0_g1:129	si_a334	TRINITY_DN5860_c0_g1	118	139	129	-30.70	-25.20	0.820846905537459	9	1-9,139-131;11-21,128-118	10-10,130-129[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	GUUUUCGGGAUUUGGGAGUGAG&UUUAUUCCU-UGUCCCGAAAAU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN5860_c0_g1_129_TPlot.pdf
TRINITY_DN5861_c0_g1:705	si_a501	TRINITY_DN5861_c0_g1	694	713	705	-33.50	-23.20	0.692537313432836	6.5	1-7,713-707;9-18,706-697	8-8,x-x[BULq];19-21,696-694[UP3]	...((((((((((-(((((((&))))))).))))))))))...	CAACGAGGAAGAC-AAAAGCG&CGUUUUUCGUCUUCCUUGGAA	4	0.999995366525886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5861_c0_g1_705_TPlot.pdf
TRINITY_DN5861_c0_g1:706	si_a500	TRINITY_DN5861_c0_g1	695	714	706	-34.40	-24.80	0.72093023255814	5.5	1-8,714-707;10-19,706-697	9-9,x-x[BULq];20-21,696-695[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	AACGAGGAAGAC-AAAAGCGA&UCGUUUUUCGUCUUCCUUGGA	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN5861_c0_g1_706_TPlot.pdf
TRINITY_DN5862_c0_g1:1008	si_s458	TRINITY_DN5862_c0_g1	996	1016	1008	-29.30	-19.20	0.655290102389078	8	1-6,1016-1011;9-12,1009-1006;13-19,1004-998	7-8,1010-1010[AILq];x-x,1005-1005[BULt];20-21,997-996[UP3]	..(((((((.((((.-((((((&))))))..))))-)))))))..	ACGGAUAUGUAGAUU-UUGUUG&CAACAAUUAUCU-CAUAUCCAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN5862_c0_g1_1008_TPlot.pdf
TRINITY_DN5862_c0_g1:280	si_s458	TRINITY_DN5862_c0_g1	268	288	280	-29.30	-19.20	0.655290102389078	8	1-6,288-283;9-12,281-278;13-19,276-270	7-8,282-282[AILq];x-x,277-277[BULt];20-21,269-268[UP3]	..(((((((.((((.-((((((&))))))..))))-)))))))..	ACGGAUAUGUAGAUU-UUGUUG&CAACAAUUAUCU-CAUAUCCAA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN5862_c0_g1_280_TPlot.pdf
TRINITY_DN58665_c0_g1:580	si_a705	TRINITY_DN58665_c0_g1	569	587	580	-30.50	-21.50	0.704918032786885	7	2-7,586-581;10-21,580-569	1-1,587-587[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GGUUGUUUUGGA--GUGCCAU&CUGGUACAUUCCAAAAUAAUC	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN58665_c0_g1_580_TPlot.pdf
TRINITY_DN5866_c0_g1:2916	si_a356	TRINITY_DN5866_c0_g1	2903	2925	2916	-26.90	-17.50	0.650557620817844	9.5	4-17,2922-2909;18-20,2906-2904	1-3,2925-2923[UP5];x-x,2908-2907[BULt];21-21,2903-2903[UP3]	.(((..((((((((((((((...&...))))))))))))))--))).	UUCUAAGAUCAAAAUAGAGUACU&UUAAUUCUAUUUUGAUC--GGAU	2	0.998651692302393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN5866_c0_g1_2916_TPlot.pdf
TRINITY_DN5867_c0_g1:10149	si_s90	TRINITY_DN5867_c0_g1	10139	10158	10149	-35.30	-23.60	0.668555240793201	7.5	2-11,10157-10148;14-21,10146-10139	1-1,10158-10158[UP5];12-13,10147-10147[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	CCGAAGUGC-GGAGAAGGGAU&CUUUCUUCUUCUUCGCUUCGG	4	0.999999999999919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5867_c0_g1_10149_TPlot.pdf
TRINITY_DN5867_c0_g1:2401	si_a329	TRINITY_DN5867_c0_g1	2390	2410	2401	-29.60	-19.70	0.66554054054054	15.5	7-20,2404-2391	1-6,2410-2405[UP5];21-21,2390-2390[UP3]	.((((((((((((((......&......)))))))))))))).	AGGGAUGGGGGAUGACGAUGG&AUUUUUUUAUUCCUUGUCCCG	2	0.999923938277612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN5867_c0_g1_2401_TPlot.pdf
TRINITY_DN5867_c0_g1:2522	si_a553	TRINITY_DN5867_c0_g1	2511	2531	2522	-33.70	-22.30	0.661721068249258	6.5	1-7,2531-2525;9-14,2523-2518;16-21,2516-2511	8-8,2524-2524[SIL];15-15,2517-2517[SIL]	((((((.((((((.(((((((&))))))).)))))).))))))	GCGGGGCGGUAAGCAAAUGGG&UCUAUUUCUUUAUCUCCCCGU	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN5867_c0_g1_2522_TPlot.pdf
TRINITY_DN5867_c0_g1:2589	si_s295	TRINITY_DN5867_c0_g1	2578	2599	2589	-32.20	-21.60	0.670807453416149	8	1-8,2599-2592;10-18,2589-2581	9-9,2591-2590[AILt];19-21,2580-2578[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	UAAUCGCAAUUUGAAAUCGACU&AGUCGAUU-GGAAUUGCGAAAA	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN5867_c0_g1_2589_TPlot.pdf
TRINITY_DN5867_c0_g1:2590	si_s294	TRINITY_DN5867_c0_g1	2579	2600	2590	-32.60	-21.60	0.662576687116564	8	2-9,2599-2592;11-19,2589-2581	1-1,2600-2600[UP5];10-10,2591-2590[AILt];20-21,2580-2579[UP3]	..(((((((((..((((((((.&.))))))))-.)))))))))..	AAUCGCAAUUUGAAAUCGACUC&UAGUCGAUU-GGAAUUGCGAAA	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN5867_c0_g1_2590_TPlot.pdf
TRINITY_DN5867_c0_g1:2600	si_s124	TRINITY_DN5867_c0_g1	2588	2610	2600	-27.10	-18.40	0.678966789667897	5.5	1-4,2610-2607;5-16,2605-2594;18-21,2591-2588	x-x,2606-2606[BULt];17-17,2593-2592[AILt]	((((..((((((((((((.((((&))))-))))))))))))-.))))	UUGAAAUCGACUCUUCUGCUUUU&AAAA-UAGAAGAGUUGA-AUCAA	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN5867_c0_g1_2600_TPlot.pdf
TRINITY_DN5867_c0_g1:2601	si_s123	TRINITY_DN5867_c0_g1	2589	2610	2601	-27.00	-18.00	0.666666666666667	5.5	1-4,2610-2607;6-17,2605-2594;19-21,2591-2589	5-5,2606-2606[SIL];18-18,2593-2592[AILt]	(((..((((((((((((.((((&)))).))))))))))))-.)))	UGAAAUCGACUCUUCUGCUUUU&AAAAAUAGAAGAGUUGA-AUCA	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s123_TRINITY_DN5867_c0_g1_2601_TPlot.pdf
TRINITY_DN5867_c0_g1:2605	si_s119	TRINITY_DN5867_c0_g1	2594	2614	2605	-27.40	-21.00	0.766423357664234	8.5	4-8,2611-2607;10-21,2605-2594	1-3,2614-2612[UP5];9-9,2606-2606[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UCGACUCUUCUGCUUUUCACU&AUAGAAAAAUAGAAGAGUUGA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s119_TRINITY_DN5867_c0_g1_2605_TPlot.pdf
TRINITY_DN5867_c0_g1:2607	si_s117	TRINITY_DN5867_c0_g1	2596	2616	2607	-24.70	-17.20	0.696356275303644	12.5	6-10,2611-2607;12-21,2605-2596	1-5,2616-2612[UP5];11-11,2606-2606[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GACUCUUCUGCUUUUCACUCU&AAAUAGAAAAAUAGAAGAGUU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN5867_c0_g1_2607_TPlot.pdf
TRINITY_DN5867_c0_g1:546	si_s802	TRINITY_DN5867_c0_g1	535	555	546	-26.40	-21.20	0.803030303030303	11	3-18,553-538	1-2,555-554[UP5];19-21,537-535[UP3]	...((((((((((((((((..&..))))))))))))))))...	CGCGGUGGCGGAGAUGGGAGA&UAUUUUAUCUUCGUUACCUUU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5867_c0_g1_546_TPlot.pdf
TRINITY_DN5867_c0_g1:8827	si_a314	TRINITY_DN5867_c0_g1	8815	8836	8827	-27.10	-20.60	0.760147601476015	6	3-16,8834-8821;17-21,8819-8815	1-2,8836-8835[UP5];x-x,8820-8820[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AAGAGCUCAUGGAUAAAUCUGG&UUGGAUUUAUCCAUGA-UUUUU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN5867_c0_g1_8827_TPlot.pdf
TRINITY_DN5867_c0_g1:8949	si_s290	TRINITY_DN5867_c0_g1	8932	8958	8949	-38.10	-25.30	0.664041994750656	10.5	2-14,8957-8945;16-16,8943-8943;17-21,8936-8932	1-1,8958-8958[UP5];15-15,8944-8944[SIL];x-x,8942-8937[BULt]	(((((......(.(((((((((((((.&.))))))))))))).)------)))))	GCAGUAGGAGGUGCAGUUGACUAGGCA&CGCCUAGUCGAUUGGA------AUUGC	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN5867_c0_g1_8949_TPlot.pdf
TRINITY_DN5867_c0_g1:9594	si_a361	TRINITY_DN5867_c0_g1	9584	9603	9594	-29.00	-20.00	0.689655172413793	9	1-14,9603-9590;16-19,9589-9586	15-15,x-x[BULq];20-21,9585-9584[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	GAUUGG-CCGAUCGGGGUGGG&UCUAUUUUGAUCGGAUCAAAA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN5867_c0_g1_9594_TPlot.pdf
TRINITY_DN5867_c0_g1:9595	si_a360	TRINITY_DN5867_c0_g1	9585	9604	9595	-29.10	-20.00	0.687285223367698	9.5	2-15,9603-9590;17-20,9589-9586	1-1,9604-9604[UP5];16-16,x-x[BULq];21-21,9585-9585[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AUUGG-CCGAUCGGGGUGGGU&UUCUAUUUUGAUCGGAUCAAA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN5867_c0_g1_9595_TPlot.pdf
TRINITY_DN5867_c0_g1:9626	si_a20	TRINITY_DN5867_c0_g1	9615	9637	9626	-26.70	-20.80	0.779026217228464	8.5	1-2,9637-9636;3-5,9634-9632;6-21,9630-9615	x-x,9635-9635[BULt];x-x,9631-9631[BULt]	((((((((((((((((.(((.((&))-)))-))))))))))))))))	UGGAGCUGAAAAUGAGCUGGUGC&GC-CUA-UUUAUUUUUAGUUCUA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN5867_c0_g1_9626_TPlot.pdf
TRINITY_DN5868_c0_g1:3675	si_s69	TRINITY_DN5868_c0_g1	3664	3685	3675	-23.40	-15.50	0.662393162393162	6	2-4,3684-3682;5-18,3680-3667	1-1,3685-3685[UP5];x-x,3681-3681[BULt];19-21,3666-3664[UP3]	...((((((((((((((.(((.&.)))-))))))))))))))...	UGUAGAAAAAAAAUAGACAGUA&AACU-UCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN5868_c0_g1_3675_TPlot.pdf
TRINITY_DN58695_c0_g1:63	si_s90	TRINITY_DN58695_c0_g1	51	74	63	-35.30	-23.40	0.662889518413598	7.5	1-6,74-69;7-15,66-58;16-20,56-52	x-x,68-67[BULt];x-x,57-57[BULt];21-21,51-51[UP3]	.(((((.(((((((((..((((((&))))))--)))))))))-))))).	AUGAAGACGAGGAAGAUCAGAAAG&CUUUCU--UCUUCUUCG-CUUCGG	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN58695_c0_g1_63_TPlot.pdf
TRINITY_DN58695_c0_g1:69	si_s77	TRINITY_DN58695_c0_g1	53	78	69	-25.50	-17.90	0.701960784313725	10.5	1-10,78-69;11-16,64-59;17-21,57-53	x-x,68-65[BULt];x-x,58-58[BULt]	(((((.((((((....((((((((((&))))))))))----))))))-)))))	GAAGACGAGGAAGAUCAGAAAGAAAA&UUUUUUUUCU----UUCCUU-UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN58695_c0_g1_69_TPlot.pdf
TRINITY_DN58695_c0_g1:74	si_s76	TRINITY_DN58695_c0_g1	59	83	74	-23.60	-18.10	0.766949152542373	7	1-14,83-70;15-21,65-59	x-x,69-66[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	GAGGAAGAUCAGAAAGAAAAGAAGU&AUUUUUUUUCUUUC----CUUUCUU	4	0.999999999999455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN58695_c0_g1_74_TPlot.pdf
TRINITY_DN586_c0_g1:1113	si_a56	TRINITY_DN586_c0_g1	1100	1122	1113	-38.90	-26.20	0.673521850899743	7	2-10,1121-1113;11-17,1110-1104;19-21,1102-1100	1-1,1122-1122[UP5];x-x,1112-1111[BULt];18-18,1103-1103[SIL]	(((.(((((((..(((((((((.&.)))))))))--))))))).)))	UGACAGAAGCGGAAGUCGAUUCG&GGAGUCGACU--CGCUUCUUUCA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN586_c0_g1_1113_TPlot.pdf
TRINITY_DN586_c0_g1:1119	si_s847	TRINITY_DN586_c0_g1	1107	1128	1119	-39.00	-28.60	0.733333333333333	6	2-16,1127-1113;17-18,1111-1110	1-1,1128-1128[UP5];x-x,1112-1112[BULt];19-21,1109-1107[UP3]	...((.(((((((((((((((.&.)))))))))))))))-))...	AGCGGAAGUCGAUUCGCUUCUC&AAGAAGCGAGUCGACU-CCUAG	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s847_TRINITY_DN586_c0_g1_1119_TPlot.pdf
TRINITY_DN586_c0_g1:2702	si_s710	TRINITY_DN586_c0_g1	2691	2711	2702	-32.00	-22.70	0.709375	7.5	3-18,2709-2694	1-2,2711-2710[UP5];19-21,2693-2691[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGCCUUUCUUUGUUCACUAGA&AUUAGUGAACAGGGAAAGAUA	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s710_TRINITY_DN586_c0_g1_2702_TPlot.pdf
TRINITY_DN586_c0_g1:2703	si_s709	TRINITY_DN586_c0_g1	2692	2712	2703	-32.00	-22.70	0.709375	8	4-19,2709-2694	1-3,2712-2710[UP5];20-21,2693-2692[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCCUUUCUUUGUUCACUAGAC&UAUUAGUGAACAGGGAAAGAU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s709_TRINITY_DN586_c0_g1_2703_TPlot.pdf
TRINITY_DN5871_c0_g1:332	si_a788	TRINITY_DN5871_c0_g1	319	341	332	-24.80	-16.30	0.657258064516129	6.5	1-11,341-331;12-18,329-323;19-21,321-319	x-x,330-330[BULt];x-x,322-322[BULt]	(((.(((((((.(((((((((((&)))))))))))-)))))))-)))	UUGUGGAGAUACGAAAAAUGGGG&UUCUAUUUUUC-UAUUUUC-CAA	2	0.999999999513952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN5871_c0_g1_332_TPlot.pdf
TRINITY_DN5871_c0_g1:736	si_a306	TRINITY_DN5871_c0_g1	725	744	736	-33.50	-22.80	0.680597014925373	8.5	2-8,743-737;11-20,735-726	1-1,744-744[UP5];9-10,736-736[AILq];21-21,725-725[UP3]	.((((((((((.-(((((((.&.)))))))..)))))))))).	GGGAUAAGUCUU-GUGAAUCA&AGAUUCGCUUGGAUUUAUCCA	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN5871_c0_g1_736_TPlot.pdf
TRINITY_DN5871_c0_g1:871	si_s4	TRINITY_DN5871_c0_g1	860	880	871	-21.60	-14.40	0.666666666666667	8.5	2-11,879-870;13-13,868-868;16-21,865-860	1-1,880-880[UP5];12-12,869-869[SIL];14-15,867-866[SIL]	((((((..(.((((((((((.&.)))))))))).)..))))))	UAGUGAGUAAGAGUGAUGUAU&UUAUAUUACUUAUUAUUACUA	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN5871_c0_g1_871_TPlot.pdf
TRINITY_DN5876_c2_g1:5288	si_s429	TRINITY_DN5876_c2_g1	5279	5297	5288	-21.10	-14.10	0.66824644549763	4	1-12,5297-5286;15-20,5285-5280	13-14,x-x[BULq];21-21,5279-5279[UP3]	.((((((--((((((((((((&))))))))))))..)))))).	UAUAUGU--UUAUUGUUAUGU&AUAUAACAAUAAUUACAUAUU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN5876_c2_g1_5288_TPlot.pdf
TRINITY_DN5878_c0_g1:1534	si_s717	TRINITY_DN5878_c0_g1	1524	1542	1534	-30.10	-19.60	0.651162790697674	7.5	3-9,1540-1534;11-15,1533-1529;17-21,1528-1524	1-2,1542-1541[UP5];10-10,x-x[BULq];16-16,x-x[BULq]	(((((-(((((-(((((((..&..))))))).))))).)))))	UGGAU-GUGUC-UUCCCUGAG&AACAGGGAAAGAUAUUAUCUA	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN5878_c0_g1_1534_TPlot.pdf
TRINITY_DN5878_c0_g1:2610	si_s446	TRINITY_DN5878_c0_g1	2598	2619	2610	-21.30	-16.90	0.793427230046948	6	2-11,2618-2609;12-21,2607-2598	1-1,2619-2619[UP5];x-x,2608-2608[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	UAAUUGUUGUAUGUAUAUGGUU&UAUUAUAUAUA-ACAACAAUUA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN5878_c0_g1_2610_TPlot.pdf
TRINITY_DN5878_c0_g1:2614	si_s442	TRINITY_DN5878_c0_g1	2602	2623	2614	-23.80	-15.60	0.65546218487395	6.5	2-4,2622-2620;6-15,2618-2609;16-21,2607-2602	1-1,2623-2623[UP5];5-5,2619-2619[SIL];x-x,2608-2608[BULt]	((((((.((((((((((.(((.&.))).))))))))))-))))))	UGUUGUAUGUAUAUGGUUUGUU&UACAUAUUAUAUAUA-ACAACA	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN5878_c0_g1_2614_TPlot.pdf
TRINITY_DN5878_c0_g1:3212	si_s496	TRINITY_DN5878_c0_g1	3200	3221	3212	-21.70	-14.80	0.682027649769585	4	1-7,3221-3215;9-13,3213-3209;14-21,3207-3200	8-8,3214-3214[SIL];x-x,3208-3208[BULt]	((((((((.(((((.(((((((&))))))).)))))-))))))))	GAGUUGUUAUUGUUCAUAUUUG&UAAAUAUAAACAA-AACAAUUC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN5878_c0_g1_3212_TPlot.pdf
TRINITY_DN5878_c0_g1:3243	si_a87	TRINITY_DN5878_c0_g1	3232	3257	3243	-27.10	-18.00	0.664206642066421	14.5	1-8,3257-3250;9-20,3244-3233	x-x,3249-3245[BULt];21-21,3232-3232[UP3]	.((((((((((((.....((((((((&))))))))-----)))))))))))).	GGUUAUCUUUUCUUUGUUUGGUGAUG&CAUUAUUA-----AGAAAAGGUAACG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a87_TRINITY_DN5878_c0_g1_3243_TPlot.pdf
TRINITY_DN5878_c0_g1:3244	si_a86	TRINITY_DN5878_c0_g1	3233	3255	3244	-26.60	-18.38	0.690977443609022	10.5	1-6,3255-3250;9-21,3245-3233	7-8,3249-3246[AILt]	(((((((((((((....((((((&))))))--..)))))))))))))	GUUAUCUUUUCUUUGUUUGGUGA&UCAUUA--UUAAGAAAAGGUAAC	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a86_TRINITY_DN5878_c0_g1_3244_TPlot.pdf
TRINITY_DN587_c0_g1:1703	si_a785	TRINITY_DN587_c0_g1	1691	1710	1703	-25.90	-17.20	0.664092664092664	6	1-7,1710-1704;10-18,1703-1695;19-21,1693-1691	8-9,x-x[BULq];x-x,1694-1694[BULt]	(((.(((((((((--(((((((&)))))))..)))))))))-)))	GAACGAUGGAAAA--AGAAGAG&CUCUUCUAUUUUUCUAUU-UUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN587_c0_g1_1703_TPlot.pdf
TRINITY_DN5881_c0_g1:1531	si_s809	TRINITY_DN5881_c0_g1	1520	1540	1531	-28.50	-19.00	0.666666666666667	8	1-6,1540-1535;9-17,1532-1524;19-21,1522-1520	7-8,1534-1533[SIL];18-18,1523-1523[SIL]	(((.(((((((((..((((((&))))))..))))))))).)))	AUUUGGGAAGGGUUCCGGAGA&UCUUCGUUACCUUUUCUUAAU	3	0.999999997940772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN5881_c0_g1_1531_TPlot.pdf
TRINITY_DN5881_c0_g1:1533	si_s807	TRINITY_DN5881_c0_g1	1522	1542	1533	-28.90	-19.70	0.681660899653979	9.5	2-8,1541-1535;11-19,1532-1524	1-1,1542-1542[UP5];9-10,1534-1533[SIL];20-21,1523-1522[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	UUGGGAAGGGUUCCGGAGAUC&UAUCUUCGUUACCUUUUCUUA	2	0.999946983306736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN5881_c0_g1_1533_TPlot.pdf
TRINITY_DN5881_c0_g1:1549	si_a676	TRINITY_DN5881_c0_g1	1537	1558	1549	-34.00	-22.20	0.652941176470588	7.5	2-8,1557-1551;10-13,1549-1546;14-21,1544-1537	1-1,1558-1558[UP5];9-9,1550-1550[SIL];x-x,1545-1545[BULt]	((((((((.((((.(((((((.&.))))))).))))-))))))))	GAGAUCGUGGUGACUGAGGAGG&AUUCCUUAUUCAC-GCGGUUUC	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN5881_c0_g1_1549_TPlot.pdf
TRINITY_DN5881_c0_g1:1559	si_a501	TRINITY_DN5881_c0_g1	1548	1568	1559	-33.50	-23.40	0.698507462686567	9	3-19,1566-1550	1-2,1568-1567[UP5];20-21,1549-1548[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GACUGAGGAGGGCGAAGAAGA&CGUUUUUCGUCUUCCUUGGAA	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5881_c0_g1_1559_TPlot.pdf
TRINITY_DN5881_c0_g1:1560	si_a500	TRINITY_DN5881_c0_g1	1549	1568	1560	-34.40	-24.10	0.700581395348837	6.5	1-2,1568-1567;4-20,1566-1550	3-3,x-x[BULq];21-21,1549-1549[UP3]	.(((((((((((((((((-((&)).))))))))))))))))).	ACUGAGGAGGGCGAAGAA-GA&UCGUUUUUCGUCUUCCUUGGA	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN5881_c0_g1_1560_TPlot.pdf
TRINITY_DN5881_c0_g1:1563	si_s77	TRINITY_DN5881_c0_g1	1552	1572	1563	-25.50	-16.90	0.662745098039216	9.5	4-12,1569-1561;14-21,1559-1552	1-3,1572-1570[UP5];13-13,1560-1560[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GAGGAGGGCGAAGAAGAAUCU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5881_c0_g1_1563_TPlot.pdf
TRINITY_DN5881_c0_g1:1566	si_s89	TRINITY_DN5881_c0_g1	1554	1579	1566	-35.30	-25.00	0.708215297450425	11.5	1-6,1579-1574;7-18,1569-1558;19-20,1556-1555	x-x,1573-1570[BULt];x-x,1557-1557[BULt];21-21,1554-1554[UP3]	.((.((((((((((((....((((((&))))))----))))))))))))-)).	GGAGGGCGAAGAAGAAUCUCGAGAGG&CCUUUC----UUCUUCUUCGCU-UCG	2	0.999554633169128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5881_c0_g1_1566_TPlot.pdf
TRINITY_DN5881_c0_g1:1567	si_s88	TRINITY_DN5881_c0_g1	1556	1580	1567	-34.80	-24.90	0.71551724137931	12	2-7,1579-1574;8-20,1569-1557	1-1,1580-1580[UP5];x-x,1573-1570[BULt];21-21,1556-1556[UP3]	.(((((((((((((....((((((.&.))))))----))))))))))))).	AGGGCGAAGAAGAAUCUCGAGAGGU&UCCUUUC----UUCUUCUUCGCUUC	2	0.999606753440389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN5881_c0_g1_1567_TPlot.pdf
TRINITY_DN5881_c0_g1:1568	si_s87	TRINITY_DN5881_c0_g1	1557	1581	1568	-32.90	-24.70	0.750759878419453	13	3-8,1579-1574;9-21,1569-1557	1-2,1581-1580[UP5];x-x,1573-1570[BULt]	(((((((((((((....((((((..&..))))))----)))))))))))))	GGGCGAAGAAGAAUCUCGAGAGGUU&UUCCUUUC----UUCUUCUUCGCUU	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5881_c0_g1_1568_TPlot.pdf
TRINITY_DN5881_c0_g1:1572	si_s68	TRINITY_DN5881_c0_g1	1561	1582	1572	-23.10	-17.10	0.74025974025974	12	1-8,1582-1575;13-21,1569-1561	9-12,1574-1570[AILt]	(((((((((.....((((((((&))))))))-....)))))))))	GAAGAAGAAUCUCGAGAGGUUG&CAACUUCU-AUUUUUUUUCUUU	2	0.998794571736414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5881_c0_g1_1572_TPlot.pdf
TRINITY_DN5881_c0_g1:1574	si_s85	TRINITY_DN5881_c0_g1	1559	1583	1574	-33.80	-23.10	0.683431952662722	16	5-10,1579-1574;11-21,1569-1559	1-4,1583-1580[UP5];x-x,1573-1570[BULt]	(((((((((((....((((((....&....))))))----)))))))))))	GCGAAGAAGAAUCUCGAGAGGUUGA&CUUUCCUUUC----UUCUUCUUCGC	4	0.999999999997101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5881_c0_g1_1574_TPlot.pdf
TRINITY_DN5881_c0_g1:1584	si_a542	TRINITY_DN5881_c0_g1	1574	1593	1584	-30.70	-20.70	0.674267100977199	6.5	1-10,1593-1584;12-13,1583-1582;15-21,1580-1574	11-11,x-x[BULq];14-14,1581-1581[SIL]	(((((((.((-((((((((((&)))))))))).)).)))))))	GAGAGGUUGA-UGGACUGAUC&GAUCGGUUCAAUCUAUUUCUU	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN5881_c0_g1_1584_TPlot.pdf
TRINITY_DN5885_c0_g1:245	si_s91	TRINITY_DN5885_c0_g1	233	253	245	-34.70	-24.20	0.697406340057637	6.5	1-8,253-246;10-13,245-242;14-20,240-234	9-9,x-x[BULq];x-x,241-241[BULt];21-21,233-233[UP3]	.(((((((.((((-((((((((&)))))))).))))-))))))).	ACCGGAGCUGGAG-GGAAGAAA&UUUCUUCUUCUUC-GCUUCGGA	3	0.9999995773829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN5885_c0_g1_245_TPlot.pdf
TRINITY_DN5885_c0_g1:246	si_s90	TRINITY_DN5885_c0_g1	234	254	246	-35.30	-27.10	0.767705382436261	5	1-9,254-246;11-14,245-242;15-21,240-234	10-10,x-x[BULq];x-x,241-241[BULt]	(((((((.((((-(((((((((&))))))))).))))-)))))))	CCGGAGCUGGAG-GGAAGAAAG&CUUUCUUCUUCUUC-GCUUCGG	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN5885_c0_g1_246_TPlot.pdf
TRINITY_DN5885_c0_g1:247	si_a792	TRINITY_DN5885_c0_g1	235	256	247	-27.60	-18.10	0.655797101449275	9	2-8,255-249;10-16,247-241;18-21,238-235	1-1,256-256[UP5];9-9,248-248[SIL];17-17,240-239[AILt]	((((..(((((((.(((((((.&.))))))).)))))))-.))))	CGGAGCUGGAGGGAAGAAAGAA&AUUUUUCUAUUUUCCA-AUCCG	2	0.999888125717722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN5885_c0_g1_247_TPlot.pdf
TRINITY_DN5885_c0_g1:248	si_s78	TRINITY_DN5885_c0_g1	235	257	248	-26.20	-19.40	0.740458015267176	7.5	2-16,256-242;17-20,239-236	1-1,257-257[UP5];x-x,241-240[BULt];21-21,235-235[UP3]	.((((..(((((((((((((((.&.)))))))))))))))--)))).	CGGAGCUGGAGGGAAGAAAGAAG&UUUUUUUCUUUCCUUU--CUUCU	2	0.99999997753485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN5885_c0_g1_248_TPlot.pdf
TRINITY_DN5885_c0_g1:249	si_s77	TRINITY_DN5885_c0_g1	236	258	249	-25.50	-20.60	0.807843137254902	6.5	1-17,258-242;18-21,239-236	x-x,241-240[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	GGAGCUGGAGGGAAGAAAGAAGA&UUUUUUUUCUUUCCUUU--CUUC	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5885_c0_g1_249_TPlot.pdf
TRINITY_DN5885_c0_g1:253	si_s73	TRINITY_DN5885_c0_g1	242	262	253	-24.00	-17.90	0.745833333333333	10.5	5-21,258-242	1-4,262-259[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGGGAAGAAAGAAGACUGC&UCUAUUUUUUUUCUUUCCUUU	2	0.999994427443683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN5885_c0_g1_253_TPlot.pdf
TRINITY_DN5885_c0_g1:254	si_s72	TRINITY_DN5885_c0_g1	243	263	254	-24.10	-17.60	0.730290456431535	12	6-21,258-243	1-5,263-259[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGGGAAGAAAGAAGACUGCA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999999992661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN5885_c0_g1_254_TPlot.pdf
TRINITY_DN5885_c0_g1:289	si_s811	TRINITY_DN5885_c0_g1	278	298	289	-26.40	-17.50	0.662878787878788	11	1-11,298-288;13-16,286-283	12-12,287-287[SIL];17-21,282-278[UP3]	.....((((.(((((((((((&))))))))))).)))).....	CACAAGGGACAGGGUGACGGA&UUCGUUACCUUUUCUUAAUAA	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN5885_c0_g1_289_TPlot.pdf
TRINITY_DN5885_c0_g1:367	si_a817	TRINITY_DN5885_c0_g1	355	376	367	-30.90	-20.20	0.653721682847896	4	1-13,376-364;14-16,362-360;18-21,358-355	x-x,363-363[BULt];17-17,359-359[SIL]	((((.(((.(((((((((((((&)))))))))))))-))).))))	UUCUAUCCUUUUUUUUUUCUUC&GAAGAAGAAGAAA-GGAAAGAA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN5885_c0_g1_367_TPlot.pdf
TRINITY_DN5885_c0_g1:40	si_s87	TRINITY_DN5885_c0_g1	28	49	40	-32.90	-25.40	0.772036474164134	7.5	1-15,49-35;16-20,33-29	x-x,34-34[BULt];21-21,28-28[UP3]	.(((((.(((((((((((((((&)))))))))))))))-))))).	CGGUGGCAGAGGAAGAGGGGGA&UUCCUUUCUUCUUCU-UCGCUU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN5885_c0_g1_40_TPlot.pdf
TRINITY_DN5885_c0_g1:41	si_s86	TRINITY_DN5885_c0_g1	29	50	41	-32.90	-25.50	0.775075987841945	7	2-16,49-35;17-21,33-29	1-1,50-50[UP5];x-x,34-34[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GGUGGCAGAGGAAGAGGGGGAC&UUUCCUUUCUUCUUCU-UCGCU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5885_c0_g1_41_TPlot.pdf
TRINITY_DN5885_c0_g1:42	si_s85	TRINITY_DN5885_c0_g1	30	51	42	-33.80	-24.30	0.718934911242604	8.5	3-17,49-35;18-21,33-30	1-2,51-50[UP5];x-x,34-34[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GUGGCAGAGGAAGAGGGGGACA&CUUUCCUUUCUUCUUCU-UCGC	4	0.999995733740282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN5885_c0_g1_42_TPlot.pdf
TRINITY_DN5885_c0_g1:44	si_s83	TRINITY_DN5885_c0_g1	33	57	44	-30.90	-21.20	0.686084142394822	13.5	1-4,57-54;5-19,49-35	x-x,53-50[BULt];20-21,34-33[UP3]	..(((((((((((((((....((((&))))----)))))))))))))))..	GCAGAGGAAGAGGGGGACAACAGAA&UUCU----UUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5885_c0_g1_44_TPlot.pdf
TRINITY_DN5885_c0_g1:45	si_s82	TRINITY_DN5885_c0_g1	34	58	45	-28.90	-21.30	0.737024221453287	13.5	2-5,57-54;6-20,49-35	1-1,58-58[UP5];x-x,53-50[BULt];21-21,34-34[UP3]	.(((((((((((((((....((((.&.))))----))))))))))))))).	CAGAGGAAGAGGGGGACAACAGAAC&UUUCU----UUCCUUUCUUCUUCUU	4	0.999999999982535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN5885_c0_g1_45_TPlot.pdf
TRINITY_DN5885_c0_g1:47	si_s80	TRINITY_DN5885_c0_g1	36	60	47	-28.20	-20.10	0.712765957446809	16	4-7,57-54;8-21,49-36	1-3,60-58[UP5];x-x,53-50[BULt]	((((((((((((((....((((...&...))))----))))))))))))))	GAGGAAGAGGGGGACAACAGAACCG&UUUUUCU----UUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN5885_c0_g1_47_TPlot.pdf
TRINITY_DN58879_c0_g1:161	si_a17	TRINITY_DN58879_c0_g1	149	170	161	-24.30	-17.90	0.736625514403292	10	4-11,167-160;13-21,157-149	1-3,170-168[UP5];12-12,159-158[AILt]	(((((((((..((((((((...&...))))))))-.)))))))))	AGCUGAAAAGAAAAUAGGCGAA&AAAGCCUAUUU-AUUUUUAGUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN58879_c0_g1_161_TPlot.pdf
TRINITY_DN58879_c0_g1:162	si_a16	TRINITY_DN58879_c0_g1	150	171	162	-26.30	-17.30	0.657794676806084	11	5-12,167-160;14-21,157-150	1-4,171-168[UP5];13-13,159-158[AILt]	((((((((..((((((((....&....))))))))-.))))))))	GCUGAAAAGAAAAUAGGCGAAG&GAAAGCCUAUUU-AUUUUUAGU	3	0.999145596941532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN58879_c0_g1_162_TPlot.pdf
TRINITY_DN5887_c0_g1:1036	si_a438	TRINITY_DN5887_c0_g1	1025	1049	1036	-31.70	-21.00	0.662460567823344	11.5	2-3,1048-1047;4-6,1045-1043;7-20,1039-1026	1-1,1049-1049[UP5];x-x,1046-1046[BULt];x-x,1042-1040[BULt];21-21,1025-1025[UP3]	.((((((((((((((...(((.((.&.))-)))---)))))))))))))).	CAUUGUCUCAUAUCCUGAGACUGGU&UCC-GUU---GGAUAUGAGAUAAUU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN5887_c0_g1_1036_TPlot.pdf
TRINITY_DN5887_c0_g1:2532	si_s217	TRINITY_DN5887_c0_g1	2520	2541	2532	-35.80	-24.00	0.670391061452514	8.5	1-9,2541-2533;11-16,2531-2526;17-18,2524-2523	10-10,2532-2532[SIL];x-x,2525-2525[BULt];19-21,2522-2520[UP3]	...((.((((((.(((((((((&))))))))).))))))-))...	AGACAUCGUGGUGUCGAGCGCA&UGUGUUCGAAACCGCG-UGAAU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN5887_c0_g1_2532_TPlot.pdf
TRINITY_DN5887_c0_g1:5316	si_a757	TRINITY_DN5887_c0_g1	5306	5325	5316	-33.10	-21.60	0.652567975830816	7.5	3-15,5323-5311;18-21,5309-5306	1-2,5325-5324[UP5];16-17,5310-5310[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	GAUUU-AGACCCGAAGGAGCA&ACCUCCUUUGGGUUUUUGAUU	4	0.999999999989136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN5887_c0_g1_5316_TPlot.pdf
TRINITY_DN58895_c0_g1:85	si_a484	TRINITY_DN58895_c0_g1	75	95	85	-27.30	-18.60	0.681318681318681	5	1-9,95-87;10-13,85-82;15-20,81-76	x-x,86-86[BULt];14-14,x-x[BULq];21-21,75-75[UP3]	.((((((-((((.(((((((((&)))))))))-)))).)))))).	UGCGACG-AUUCAUAUAUAACA&UGUUAUAUA-GAAUAUGUCGUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN58895_c0_g1_85_TPlot.pdf
TRINITY_DN58895_c0_g1:88	si_a482	TRINITY_DN58895_c0_g1	77	97	88	-26.70	-18.10	0.677902621722847	4.5	2-11,96-87;12-15,85-82;17-21,81-77	1-1,97-97[UP5];x-x,86-86[BULt];16-16,x-x[BULq]	(((((-((((.((((((((((.&.))))))))))-)))).)))))	CGACG-AUUCAUAUAUAACAAG&AUUGUUAUAUA-GAAUAUGUCG	0	0.0483228274101588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN58895_c0_g1_88_TPlot.pdf
TRINITY_DN588_c1_g2:2303	si_s353	TRINITY_DN588_c1_g2	2288	2316	2303	-26.90	-17.70	0.657992565055762	12.5	1-6,2316-2311;7-16,2306-2297;17-21,2292-2288	x-x,2310-2307[BULt];x-x,2296-2293[BULt]	(((((....((((((((((....((((((&))))))----))))))))))----)))))	GUUCAAGGUGUCUAUUUCUAGUUUUAUCU&AGAUAA----AGAAAUAGAU----UGAAC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN588_c1_g2_2303_TPlot.pdf
TRINITY_DN5891_c0_g1:1292	si_a348	TRINITY_DN5891_c0_g1	1280	1301	1292	-21.10	-16.10	0.76303317535545	7	1-14,1301-1288;15-18,1286-1283	x-x,1287-1287[BULt];19-21,1282-1280[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	ACUGUAGCAGUUGGUAUUUUCG&CGAAAAUAUUAAUU-CUAUUUU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN5891_c0_g1_1292_TPlot.pdf
TRINITY_DN5892_c0_g1:1167	si_s165	TRINITY_DN5892_c0_g1	1155	1177	1167	-41.70	-30.80	0.738609112709832	5	2-9,1176-1169;10-16,1167-1161;17-21,1159-1155	1-1,1177-1177[UP5];x-x,1168-1168[BULt];x-x,1160-1160[BULt]	(((((.(((((((.((((((((.&.))))))))-)))))))-)))))	GCAUCAUUUACCCUCUGGCUAUU&CAUGGCCAG-GGGUAAA-GAUGC	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s165_TRINITY_DN5892_c0_g1_1167_TPlot.pdf
TRINITY_DN5892_c0_g1:985	si_s175	TRINITY_DN5892_c0_g1	974	997	985	-38.10	-25.02	0.656692913385827	12.5	1-4,997-994;7-16,988-979;19-21,976-974	5-6,993-989[AILt];17-18,978-977[SIL]	(((..((((((((((.....((((&))))---..))))))))))..)))	CGUCUUUCGGGCAUCGUCUGUACC&GGUA---AAGAUGCCCGAGUAACG	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s175_TRINITY_DN5892_c0_g1_985_TPlot.pdf
TRINITY_DN5893_c0_g1:3107	si_s16	TRINITY_DN5893_c0_g1	3096	3117	3107	-25.60	-17.00	0.6640625	4.5	2-8,3116-3110;9-21,3108-3096	1-1,3117-3117[UP5];x-x,3109-3109[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	UUGUGAUUAAUAUCAGUAAUAC&UUAUUACU-AUAUUGAUUGCAA	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN5893_c0_g1_3107_TPlot.pdf
TRINITY_DN5893_c0_g1:3376	si_a390	TRINITY_DN5893_c0_g1	3365	3387	3376	-24.80	-16.24	0.654838709677419	13	1-9,3387-3379;14-20,3372-3366	10-13,3378-3373[AILt];21-21,3365-3365[UP3]	.(((((((......(((((((((&)))))))))--....))))))).	UCAAUUCUUUCACGUCUUGAUUC&GAAUUAAGA--AUAUAGAAUUGU	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a390_TRINITY_DN5893_c0_g1_3376_TPlot.pdf
TRINITY_DN5893_c0_g1:3436	si_s698	TRINITY_DN5893_c0_g1	3425	3445	3436	-27.00	-17.80	0.659259259259259	11.5	1-7,3445-3439;9-9,3437-3437;11-20,3435-3426	8-8,3438-3438[SIL];10-10,3436-3436[SIL];21-21,3425-3425[UP3]	.((((((((((.(.(((((((&))))))).).)))))))))).	GUCGCUGGUGGCUGGGCUGGU&AUUAGUCGAUUUAUUAGUGAA	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s698_TRINITY_DN5893_c0_g1_3436_TPlot.pdf
TRINITY_DN5893_c0_g1:3437	si_s697	TRINITY_DN5893_c0_g1	3426	3446	3437	-26.90	-17.90	0.66542750929368	11	2-8,3445-3439;10-10,3437-3437;12-21,3435-3426	1-1,3446-3446[UP5];9-9,3438-3438[SIL];11-11,3436-3436[SIL]	((((((((((.(.(((((((.&.))))))).).))))))))))	UCGCUGGUGGCUGGGCUGGUG&AAUUAGUCGAUUUAUUAGUGA	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN5893_c0_g1_3437_TPlot.pdf
TRINITY_DN5893_c0_g1:3554	si_s508	TRINITY_DN5893_c0_g1	3543	3563	3554	-22.80	-15.70	0.68859649122807	7.5	2-12,3562-3552;14-18,3550-3546	1-1,3563-3563[UP5];13-13,3551-3551[SIL];19-21,3545-3543[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	UAAAGGAAGGUGGAAUUGUUC&AAACAAUUCUAUAUUCUUAAU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN5893_c0_g1_3554_TPlot.pdf
TRINITY_DN5893_c0_g1:3555	si_s507	TRINITY_DN5893_c0_g1	3544	3564	3555	-22.70	-15.70	0.691629955947136	8	3-13,3562-3552;15-19,3550-3546	1-2,3564-3563[UP5];14-14,3551-3551[SIL];20-21,3545-3544[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	AAAGGAAGGUGGAAUUGUUCA&AAAACAAUUCUAUAUUCUUAA	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN5893_c0_g1_3555_TPlot.pdf
TRINITY_DN5893_c0_g1:3558	si_s504	TRINITY_DN5893_c0_g1	3547	3567	3558	-24.70	-16.30	0.659919028340081	6.5	1-3,3567-3565;6-16,3562-3552;18-21,3550-3547	4-5,3564-3563[SIL];17-17,3551-3551[SIL]	((((.(((((((((((..(((&)))..))))))))))).))))	GGAAGGUGGAAUUGUUCAGUU&AACAAAACAAUUCUAUAUUCU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN5893_c0_g1_3558_TPlot.pdf
TRINITY_DN5896_c0_g1:1297	si_a633	TRINITY_DN5896_c0_g1	1286	1306	1297	-26.40	-18.40	0.696969696969697	13	5-13,1302-1294;16-20,1291-1287	1-4,1306-1303[UP5];14-15,1293-1292[SIL];21-21,1286-1286[UP3]	.(((((..(((((((((....&....)))))))))..))))).	AGCUCAUUGAGAUCGGCGAGA&UUAUGUCGAUUUUUUUGAGUA	4	0.999924809461569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN5896_c0_g1_1297_TPlot.pdf
TRINITY_DN58976_c0_g1:29	si_a111	TRINITY_DN58976_c0_g1	18	38	29	-26.20	-19.30	0.736641221374046	12	5-17,34-22	1-4,38-35[UP5];18-21,21-18[UP3]	....(((((((((((((....&....)))))))))))))....	GGCCACAAGCUCGUGUUCCGU&AUAAAAUACGAGCUUGUUUUA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN58976_c0_g1_29_TPlot.pdf
TRINITY_DN5897_c0_g1:3295	si_s33	TRINITY_DN5897_c0_g1	3284	3304	3295	-24.10	-16.70	0.692946058091286	7	1-1,3304-3304;3-18,3302-3287	2-2,3303-3303[SIL];19-21,3286-3284[UP3]	...((((((((((((((((.(&).))))))))))))))))...	CACUGUUGAAGAUUUGGUUUC&GCAACUAAAUCUUUAAUAAUU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN5897_c0_g1_3295_TPlot.pdf
TRINITY_DN5897_c0_g1:3626	si_a795	TRINITY_DN5897_c0_g1	3615	3635	3626	-30.20	-20.90	0.69205298013245	8.5	3-9,3633-3627;11-20,3625-3616	1-2,3635-3634[UP5];10-10,3626-3626[SIL];21-21,3615-3615[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	UUUUGGAUUGGCGAAUGGACA&UUUCUAUUUUCCAAUCCGAAG	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN5897_c0_g1_3626_TPlot.pdf
TRINITY_DN5897_c0_g1:3627	si_a794	TRINITY_DN5897_c0_g1	3616	3636	3627	-28.60	-20.60	0.72027972027972	9.5	4-10,3633-3627;12-21,3625-3616	1-3,3636-3634[UP5];11-11,3626-3626[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUUGGAUUGGCGAAUGGACAU&UUUUCUAUUUUCCAAUCCGAA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN5897_c0_g1_3627_TPlot.pdf
TRINITY_DN589_c0_g1:1281	si_s69	TRINITY_DN589_c0_g1	1270	1290	1281	-23.40	-15.40	0.658119658119658	7.5	3-10,1288-1281;12-15,1279-1276;17-21,1274-1270	1-2,1290-1289[UP5];11-11,1280-1280[SIL];16-16,1275-1275[SIL]	(((((.((((.((((((((..&..)))))))).)))).)))))	GAGAGCAAAAUAAUGGAAGGC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN589_c0_g1_1281_TPlot.pdf
TRINITY_DN589_c0_g1:1598	si_a377	TRINITY_DN589_c0_g1	1587	1607	1598	-24.50	-16.00	0.653061224489796	10	4-17,1604-1591	1-3,1607-1605[UP5];18-21,1590-1587[UP3]	....((((((((((((((...&...))))))))))))))....	GGUCAUUCGAAGUCAUUUAAA&CAAAAAUGAUUUCGAAUUAAG	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a377_TRINITY_DN589_c0_g1_1598_TPlot.pdf
TRINITY_DN58_c0_g1:855	si_a179	TRINITY_DN58_c0_g1	844	865	855	-32.90	-22.60	0.68693009118541	10	2-4,864-862;7-8,859-858;9-21,856-844	1-1,865-865[UP5];5-6,861-860[SIL];x-x,857-857[BULt]	(((((((((((((.((..(((.&.)))..))-)))))))))))))	GGGAGGGAUAUUGUUCGUGGCU&CGUCUAGA-UAAUAUCUUUCCC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN58_c0_g1_855_TPlot.pdf
TRINITY_DN59004_c0_g1:221	si_s444	TRINITY_DN59004_c0_g1	210	230	221	-22.80	-15.50	0.679824561403509	11	7-21,224-210	1-6,230-225[UP5]	(((((((((((((((......&......)))))))))))))))	AUUGUUGUUAUAUAUCGCCUA&CAUAUUAUAUAUAACAACAAU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN59004_c0_g1_221_TPlot.pdf
TRINITY_DN5901_c0_g1:1757	si_s439	TRINITY_DN5901_c0_g1	1746	1766	1757	-21.50	-14.10	0.655813953488372	9.5	2-3,1765-1764;6-9,1761-1758;11-20,1756-1747	1-1,1766-1766[UP5];4-5,1763-1762[SIL];10-10,1757-1757[SIL];21-21,1746-1746[UP3]	.((((((((((.((((..((.&.))..)))).)))))))))).	CGUUAUGUAUAUUAUGGAGUA&AAUUACAUAUUAUAUAUAACA	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN5901_c0_g1_1757_TPlot.pdf
TRINITY_DN5901_c0_g1:217	si_a410	TRINITY_DN5901_c0_g1	206	226	217	-17.80	-12.40	0.696629213483146	5.5	1-14,226-213;16-21,211-206	15-15,212-212[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UUUAUUCAAAUAUGGAUAGAG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5901_c0_g1_217_TPlot.pdf
TRINITY_DN5901_c0_g1:614	si_a501	TRINITY_DN5901_c0_g1	603	627	614	-33.50	-24.90	0.743283582089552	12	1-7,627-621;8-19,616-605	x-x,620-617[BULt];20-21,604-603[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	CACCAAGGAAGAUGUGCAGAAAACG&CGUUUUU----CGUCUUCCUUGGAA	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN5901_c0_g1_614_TPlot.pdf
TRINITY_DN5901_c0_g1:622	si_a497	TRINITY_DN5901_c0_g1	607	631	622	-32.00	-24.40	0.7625	10.5	2-11,630-621;12-21,616-607	1-1,631-631[UP5];x-x,620-617[BULt]	((((((((((....((((((((((.&.))))))))))----))))))))))	AAGGAAGAUGUGCAGAAAACGACAA&AUGUCGUUUUU----CGUCUUCCUU	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5901_c0_g1_622_TPlot.pdf
TRINITY_DN5902_c0_g1:2143	si_a348	TRINITY_DN5902_c0_g1	2132	2149	2143	-21.10	-14.50	0.687203791469194	7.5	1-4,2149-2146;8-21,2145-2132	5-7,x-x[BULq]	((((((((((((((---((((&))))...))))))))))))))	GAAAUAGAAUUAGU---UUCG&CGAAAAUAUUAAUUCUAUUUU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN5902_c0_g1_2143_TPlot.pdf
TRINITY_DN5903_c0_g1:1691	si_s49	TRINITY_DN5903_c0_g1	1680	1700	1691	-29.30	-19.20	0.655290102389078	8	4-11,1697-1690;14-21,1687-1680	1-3,1700-1698[UP5];12-13,1689-1688[SIL]	((((((((..((((((((...&...))))))))..))))))))	UGCUAACUACAAAUCCAAACC&UAAUUGGAUUUCAAGUUAGCA	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN5903_c0_g1_1691_TPlot.pdf
TRINITY_DN5903_c0_g1:199	si_s438	TRINITY_DN5903_c0_g1	188	207	199	-21.20	-16.20	0.764150943396226	8.5	3-5,205-203;7-21,202-188	1-2,207-206[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	GUUGUGUGUGAUGUG-AAUAU&UAAUUACAUAUUAUAUAUAAC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN5903_c0_g1_199_TPlot.pdf
TRINITY_DN5905_c0_g1:2104	si_s481	TRINITY_DN5905_c0_g1	2093	2114	2104	-23.00	-15.60	0.678260869565217	7	1-3,2114-2112;4-8,2110-2106;10-21,2104-2093	x-x,2111-2111[BULt];9-9,2105-2105[SIL]	((((((((((((.(((((.(((&)))-))))).))))))))))))	UAUUUGGAUAGACAUAGGCGUC&GAU-CCUAUAUUUAUUUAAAUA	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN5905_c0_g1_2104_TPlot.pdf
TRINITY_DN5905_c0_g1:2105	si_s480	TRINITY_DN5905_c0_g1	2094	2115	2105	-25.00	-17.60	0.704	7	1-4,2115-2112;5-9,2110-2106;11-21,2104-2094	x-x,2111-2111[BULt];10-10,2105-2105[SIL]	(((((((((((.(((((.((((&))))-))))).)))))))))))	AUUUGGAUAGACAUAGGCGUCC&GGAU-CCUAUAUUUAUUUAAAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN5905_c0_g1_2105_TPlot.pdf
TRINITY_DN5905_c0_g1:2414	si_a63	TRINITY_DN5905_c0_g1	2403	2423	2414	-30.20	-19.70	0.652317880794702	6.5	2-8,2422-2416;10-19,2414-2405	1-1,2423-2423[UP5];9-9,2415-2415[SIL];20-21,2404-2403[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	UGUAAUUUGAGAUAAGCGAGA&ACUCGCUUCUUUCAAAUUGUU	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN5905_c0_g1_2414_TPlot.pdf
TRINITY_DN5905_c0_g1:2419	si_a405	TRINITY_DN5905_c0_g1	2409	2428	2419	-19.80	-14.00	0.707070707070707	6	1-15,2428-2414;17-21,2413-2409	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	UUGAG-AUAAGCGAGAUAAUU&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999996719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5905_c0_g1_2419_TPlot.pdf
TRINITY_DN5905_c0_g1:351	si_a56	TRINITY_DN5905_c0_g1	336	360	351	-38.90	-26.40	0.67866323907455	11	1-5,360-356;7-14,354-347;15-20,342-337	6-6,355-355[SIL];x-x,346-343[BULt];21-21,336-336[UP3]	.((((((....((((((((.(((((&))))).))))))))----)))))).	AGAGAGAACUUGGCGGGUUCGCUCC&GGAGUCGACUCGCU----UCUUUCA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN5905_c0_g1_351_TPlot.pdf
TRINITY_DN5906_c0_g1:2087	si_s834	TRINITY_DN5906_c0_g1	2071	2096	2087	-26.70	-17.40	0.651685393258427	11.5	4-15,2093-2082;16-21,2076-2071	1-3,2096-2094[UP5];x-x,2081-2077[BULt]	((((((.....((((((((((((...&...))))))))))))-----))))))	UGCUUCAGAUAUUUCAGAUUGUUCUG&AAAAACAAUUUGAAA-----GAAGCG	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s834_TRINITY_DN5906_c0_g1_2087_TPlot.pdf
TRINITY_DN5906_c0_g1:2374	si_a142	TRINITY_DN5906_c0_g1	2363	2383	2374	-23.50	-16.50	0.702127659574468	10.5	3-17,2381-2367	1-2,2383-2382[UP5];18-21,2366-2363[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUCCAACAGCAAUGGUUGAGA&AAUUAAUCGUUGUUGUUUUAA	4	0.999998737822611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN5906_c0_g1_2374_TPlot.pdf
TRINITY_DN5906_c0_g1:2375	si_a141	TRINITY_DN5906_c0_g1	2364	2384	2375	-23.80	-16.50	0.69327731092437	11.5	4-18,2381-2367	1-3,2384-2382[UP5];19-21,2366-2364[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCCAACAGCAAUGGUUGAGAG&UAAUUAAUCGUUGUUGUUUUA	3	0.999998392297536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN5906_c0_g1_2375_TPlot.pdf
TRINITY_DN5906_c0_g1:2376	si_a140	TRINITY_DN5906_c0_g1	2365	2385	2376	-25.20	-16.50	0.654761904761905	12.5	5-19,2381-2367	1-4,2385-2382[UP5];20-21,2366-2365[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAACAGCAAUGGUUGAGAGA&GUAAUUAAUCGUUGUUGUUUU	4	0.999999998491396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN5906_c0_g1_2376_TPlot.pdf
TRINITY_DN5906_c0_g1:3778	si_a327	TRINITY_DN5906_c0_g1	3766	3787	3778	-28.40	-20.90	0.735915492957746	7	2-10,3786-3778;12-20,3775-3767	1-1,3787-3787[UP5];11-11,3777-3776[AILt];21-21,3766-3766[UP3]	.(((((((((..(((((((((.&.)))))))))-.))))))))).	CGACAAGGAAGAAGAAAAAUCU&UGAUUUUUUU-AUUCCUUGUCC	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN5906_c0_g1_3778_TPlot.pdf
TRINITY_DN5906_c0_g1:3780	si_a325	TRINITY_DN5906_c0_g1	3768	3789	3780	-25.90	-17.60	0.67953667953668	9	4-12,3786-3778;14-21,3775-3768	1-3,3789-3787[UP5];13-13,3777-3776[AILt]	((((((((..(((((((((...&...)))))))))-.))))))))	ACAAGGAAGAAGAAAAAUCUUC&CAUGAUUUUUUU-AUUCCUUGU	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN5906_c0_g1_3780_TPlot.pdf
TRINITY_DN5906_c0_g1:3807	si_s74	TRINITY_DN5906_c0_g1	3795	3816	3807	-25.00	-17.80	0.712	8.5	4-14,3813-3803;15-21,3801-3795	1-3,3816-3814[UP5];x-x,3802-3802[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GAAAGGAUGAGAAAAAGGAGAA&CUAUUUUUUUUCUU-UCCUUUC	2	0.999999956005823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5906_c0_g1_3807_TPlot.pdf
TRINITY_DN5906_c0_g1:3838	si_s86	TRINITY_DN5906_c0_g1	3825	3847	3838	-32.90	-23.00	0.699088145896657	5.5	1-14,3847-3834;15-17,3831-3829;19-21,3827-3825	x-x,3833-3832[BULt];18-18,3828-3828[SIL]	(((.(((..((((((((((((((&))))))))))))))--))).)))	AGCUGAGUCGAGAAGAGAGGAAG&UUUCCUUUCUUCUU--CUUCGCU	2	0.999999697158264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN5906_c0_g1_3838_TPlot.pdf
TRINITY_DN5909_c0_g1:1043	si_a154	TRINITY_DN5909_c0_g1	1032	1051	1043	-27.00	-18.90	0.7	8	1-6,1051-1046;9-19,1044-1034	7-8,1045-1045[AILq];20-21,1033-1032[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	UCUAGAUUGGCCUC-AAGCAA&UUGUUUUAAGGUCAAUCUAUU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN5909_c0_g1_1043_TPlot.pdf
TRINITY_DN5909_c0_g1:1044	si_a153	TRINITY_DN5909_c0_g1	1033	1052	1044	-28.70	-22.40	0.780487804878049	6.5	1-7,1052-1046;10-20,1044-1034	8-9,1045-1045[AILq];21-21,1033-1033[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	CUAGAUUGGCCUC-AAGCAAC&GUUGUUUUAAGGUCAAUCUAU	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN5909_c0_g1_1044_TPlot.pdf
TRINITY_DN5909_c0_g1:1045	si_a152	TRINITY_DN5909_c0_g1	1034	1053	1045	-29.20	-23.10	0.791095890410959	5.5	1-8,1053-1046;11-21,1044-1034	9-10,1045-1045[AILq]	(((((((((((.-((((((((&))))))))..)))))))))))	UAGAUUGGCCUC-AAGCAACA&UGUUGUUUUAAGGUCAAUCUA	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN5909_c0_g1_1045_TPlot.pdf
TRINITY_DN5909_c0_g1:1046	si_a151	TRINITY_DN5909_c0_g1	1035	1054	1046	-28.90	-21.80	0.754325259515571	6.5	2-9,1053-1046;12-21,1044-1035	1-1,1054-1054[UP5];10-11,1045-1045[AILq]	((((((((((.-((((((((.&.))))))))..))))))))))	AGAUUGGCCUC-AAGCAACAU&UUGUUGUUUUAAGGUCAAUCU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN5909_c0_g1_1046_TPlot.pdf
TRINITY_DN5909_c0_g1:1105	si_a784	TRINITY_DN5909_c0_g1	1094	1115	1105	-24.70	-16.30	0.659919028340081	9.5	2-5,1114-1111;6-16,1109-1099	1-1,1115-1115[UP5];x-x,1110-1110[BULt];17-21,1098-1094[UP3]	.....(((((((((((.((((.&.))))-))))))))))).....	UUACCAGAGAAAUAGAUGGAGG&ACUCU-UCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5909_c0_g1_1105_TPlot.pdf
TRINITY_DN5909_c0_g1:1106	si_a783	TRINITY_DN5909_c0_g1	1095	1116	1106	-24.70	-16.30	0.659919028340081	10.5	3-6,1114-1111;7-17,1109-1099	1-2,1116-1115[UP5];x-x,1110-1110[BULt];18-21,1098-1095[UP3]	....(((((((((((.((((..&..))))-)))))))))))....	UACCAGAGAAAUAGAUGGAGGA&AACUCU-UCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5909_c0_g1_1106_TPlot.pdf
TRINITY_DN5909_c0_g1:1109	si_s68	TRINITY_DN5909_c0_g1	1097	1119	1109	-23.10	-15.30	0.662337662337662	9.5	1-3,1119-1117;4-12,1115-1107;13-19,1105-1099	x-x,1116-1116[BULt];x-x,1106-1106[BULt];20-21,1098-1097[UP3]	..(((((((.(((((((((.(((&)))-)))))))))-)))))))..	CCAGAGAAAUAGAUGGAGGAUUG&CAA-CUUCUAUUU-UUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5909_c0_g1_1109_TPlot.pdf
TRINITY_DN5909_c0_g1:1165	si_s50	TRINITY_DN5909_c0_g1	1154	1174	1165	-29.00	-20.80	0.717241379310345	6.5	2-4,1173-1171;6-20,1169-1155	1-1,1174-1174[UP5];5-5,1170-1170[SIL];21-21,1154-1154[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	GUGCUGACUUGAGAUUAAAUG&AAUUGGAUUUCAAGUUAGCAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN5909_c0_g1_1165_TPlot.pdf
TRINITY_DN5909_c0_g1:233	si_a113	TRINITY_DN5909_c0_g1	223	242	233	-26.20	-17.50	0.66793893129771	5.5	1-12,242-231;14-19,230-225	13-13,x-x[BULq];20-21,224-223[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	GUUAAAAU-GGCUCGUGUUUU&AAAAUACGAGCUUGUUUUAUA	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN5909_c0_g1_233_TPlot.pdf
TRINITY_DN5909_c0_g1:234	si_a112	TRINITY_DN5909_c0_g1	224	243	234	-26.20	-18.80	0.717557251908397	4	1-13,243-231;15-20,230-225	14-14,x-x[BULq];21-21,224-224[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	UUAAAAU-GGCUCGUGUUUUA&UAAAAUACGAGCUUGUUUUAU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN5909_c0_g1_234_TPlot.pdf
TRINITY_DN5909_c0_g1:235	si_a111	TRINITY_DN5909_c0_g1	225	244	235	-26.20	-18.70	0.713740458015267	4	2-14,243-231;16-21,230-225	1-1,244-244[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	UAAAAU-GGCUCGUGUUUUAG&AUAAAAUACGAGCUUGUUUUA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN5909_c0_g1_235_TPlot.pdf
TRINITY_DN590_c0_g1:2108	si_a887	TRINITY_DN590_c0_g1	2097	2117	2108	-22.90	-15.00	0.655021834061135	5	1-6,2117-2112;8-21,2110-2097	7-7,2111-2111[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	UUGUUAUUGUUGUAAUGAUUG&CAAUCAAUAUAGUAAUAAUAA	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN590_c0_g1_2108_TPlot.pdf
TRINITY_DN590_c0_g1:2117	si_a712	TRINITY_DN590_c0_g1	2106	2127	2117	-28.20	-19.80	0.702127659574468	5.5	1-7,2127-2121;8-19,2119-2108	x-x,2120-2120[BULt];20-21,2107-2106[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	UUGUAAUGAUUGUUAUUGGAAU&AUUCCAA-AAUAAUCGUUACUC	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN590_c0_g1_2117_TPlot.pdf
TRINITY_DN590_c0_g1:2118	si_a711	TRINITY_DN590_c0_g1	2107	2128	2118	-27.90	-19.90	0.71326164874552	5.5	2-8,2127-2121;9-20,2119-2108	1-1,2128-2128[UP5];x-x,2120-2120[BULt];21-21,2107-2107[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	UGUAAUGAUUGUUAUUGGAAUU&CAUUCCAA-AAUAAUCGUUACU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN590_c0_g1_2118_TPlot.pdf
TRINITY_DN590_c0_g2:824	si_s318	TRINITY_DN590_c0_g2	813	835	824	-32.80	-22.30	0.679878048780488	8	1-2,835-834;4-5,832-831;6-8,829-827;9-20,825-814	3-3,833-833[SIL];x-x,830-830[BULt];x-x,826-826[BULt];21-21,813-813[UP3]	.((((((((((((.(((.((.((&)).))-)))-)))))))))))).	AGUUUGUAACAGGAAAGUGAGAG&CUGUC-CUU-CUUGUUACAAACA	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN590_c0_g2_824_TPlot.pdf
TRINITY_DN590_c0_g2:825	si_s317	TRINITY_DN590_c0_g2	814	836	825	-33.10	-23.20	0.700906344410876	7	1-3,836-834;5-6,832-831;7-9,829-827;10-21,825-814	4-4,833-833[SIL];x-x,830-830[BULt];x-x,826-826[BULt]	((((((((((((.(((.((.(((&))).))-)))-))))))))))))	GUUUGUAACAGGAAAGUGAGAGA&UCUGUC-CUU-CUUGUUACAAAC	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN590_c0_g2_825_TPlot.pdf
TRINITY_DN590_c0_g2:833	si_a787	TRINITY_DN590_c0_g2	823	843	833	-26.30	-18.10	0.688212927756654	7.5	1-5,843-839;6-12,837-831;14-20,830-824	x-x,838-838[BULt];13-13,x-x[BULq];21-21,823-823[UP3]	.(((((((-(((((((.(((((&)))))-))))))).))))))).	AGGAAAGU-GAGAGAUAAGGAG&CUUCU-AUUUUUCUAUUUUCCA	2	0.999994357653408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN590_c0_g2_833_TPlot.pdf
TRINITY_DN59107_c0_g1:272	si_s76	TRINITY_DN59107_c0_g1	261	281	272	-23.60	-18.50	0.783898305084746	5.5	1-11,281-271;14-20,268-262	12-13,270-269[SIL];21-21,261-261[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	UGGAAAGGUCAGAGAAAAAAU&AUUUUUUUUCUUUCCUUUCUU	3	0.999999999376282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN59107_c0_g1_272_TPlot.pdf
TRINITY_DN59112_c0_g1:49	si_a409	TRINITY_DN59112_c0_g1	38	58	49	-19.50	-15.28	0.783589743589744	7.5	1-14,58-45;18-21,41-38	15-17,44-42[SIL]	((((...((((((((((((((&))))))))))))))...))))	UUAUGGUGAUGUAGACAGAGC&GUUUUGUUUAUAUUUAAAUAA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN59112_c0_g1_49_TPlot.pdf
TRINITY_DN59112_c0_g1:50	si_a408	TRINITY_DN59112_c0_g1	39	59	50	-20.10	-14.68	0.730348258706468	8.5	2-15,58-45;19-21,41-39	1-1,59-59[UP5];16-18,44-42[SIL]	(((...((((((((((((((.&.))))))))))))))...)))	UAUGGUGAUGUAGACAGAGCU&UGUUUUGUUUAUAUUUAAAUA	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN59112_c0_g1_50_TPlot.pdf
TRINITY_DN59112_c0_g1:54	si_a404	TRINITY_DN59112_c0_g1	43	63	54	-21.70	-16.30	0.751152073732719	9.5	1-3,63-61;6-19,58-45	4-5,60-59[SIL];20-21,44-43[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	GUGAUGUAGACAGAGCUCUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN59112_c0_g1_54_TPlot.pdf
TRINITY_DN59112_c0_g1:57	si_a401	TRINITY_DN59112_c0_g1	46	66	57	-22.60	-15.40	0.68141592920354	12	4-6,63-61;9-21,58-46	1-3,66-64[UP5];7-8,60-59[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	AUGUAGACAGAGCUCUUCCAG&AUAGAAUUGUUUUGUUUAUAU	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN59112_c0_g1_57_TPlot.pdf
TRINITY_DN59112_c0_g1:97	si_s73	TRINITY_DN59112_c0_g1	86	106	97	-24.00	-16.40	0.683333333333333	10.5	3-4,104-103;6-21,101-86	1-2,106-105[UP5];5-5,102-102[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	AAAGGAAGGAAGAGGGUUGAA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN59112_c0_g1_97_TPlot.pdf
TRINITY_DN5915_c0_g1:844	si_s312	TRINITY_DN5915_c0_g1	833	853	844	-29.00	-22.90	0.789655172413793	12.5	5-21,849-833	1-4,853-850[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGGCGAGGGGGGCGGAGGUCA&AAAAUUCUGUCCUUCUUGUUA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN5915_c0_g1_844_TPlot.pdf
TRINITY_DN5915_c0_g1:846	si_s310	TRINITY_DN5915_c0_g1	835	856	846	-32.10	-22.20	0.691588785046729	15	1-2,856-855;7-21,849-835	3-6,854-850[AILt]	(((((((((((((((.....((&))-....)))))))))))))))	GCGAGGGGGGCGGAGGUCAACG&CG-AAAAUUCUGUCCUUCUUGU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN5915_c0_g1_846_TPlot.pdf
TRINITY_DN5915_c0_g1:848	si_a497	TRINITY_DN5915_c0_g1	837	860	848	-32.00	-22.70	0.709375	14	3-8,858-853;9-21,849-837	1-2,860-859[UP5];x-x,852-850[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	GAGGGGGGCGGAGGUCAACGGCCA&AUGUCGUU---UUUCGUCUUCCUU	3	0.999996237632989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5915_c0_g1_848_TPlot.pdf
TRINITY_DN5915_c0_g1:849	si_a496	TRINITY_DN5915_c0_g1	838	861	849	-32.40	-21.50	0.66358024691358	15.5	4-9,858-853;10-21,849-838	1-3,861-859[UP5];x-x,852-850[BULt]	((((((((((((...((((((...&...))))))---))))))))))))	AGGGGGGCGGAGGUCAACGGCCAG&UAUGUCGUU---UUUCGUCUUCCU	2	0.999999811281462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN5915_c0_g1_849_TPlot.pdf
TRINITY_DN5916_c0_g1:118	si_a455	TRINITY_DN5916_c0_g1	107	127	118	-21.10	-14.20	0.672985781990521	8	2-14,126-114	1-1,127-127[UP5];15-21,113-107[UP3]	.......(((((((((((((.&.))))))))))))).......	AUAACAGAUAUAACAACAAUA&AAUUGUUGUUAUAUAUAAUAU	4	0.99999944725364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN5916_c0_g1_118_TPlot.pdf
TRINITY_DN5916_c0_g1:160	si_a452	TRINITY_DN5916_c0_g1	149	169	160	-23.00	-16.00	0.695652173913043	6.5	2-17,168-153	1-1,169-169[UP5];18-21,152-149[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUAGGUAUAAUAACAAUUAUA&GAUAAUUGUUGUUAUAUAUAA	2	0.940707697356059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN5916_c0_g1_160_TPlot.pdf
TRINITY_DN59176_c0_g1:193	si_s74	TRINITY_DN59176_c0_g1	181	202	193	-25.00	-20.30	0.812	5.5	1-11,202-192;12-20,190-182	x-x,191-191[BULt];21-21,181-181[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	AGAAGGAAAGAAGAAAAAAUGG&CUAUUUUUUUU-CUUUCCUUUC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN59176_c0_g1_193_TPlot.pdf
TRINITY_DN59176_c0_g1:195	si_s72	TRINITY_DN59176_c0_g1	183	204	195	-24.10	-20.60	0.854771784232365	4	2-13,203-192;14-21,190-183	1-1,204-204[UP5];x-x,191-191[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AAGGAAAGAAGAAAAAAUGGAU&UUCUAUUUUUUUU-CUUUCCUU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN59176_c0_g1_195_TPlot.pdf
TRINITY_DN5917_c0_g1:474	si_s509	TRINITY_DN5917_c0_g1	463	483	474	-22.80	-14.90	0.653508771929825	9	3-8,481-476;11-21,473-463	1-2,483-482[UP5];9-10,475-474[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GAUUAAGGAUAAUGGAUUGAA&AACAAUUCUAUAUUCUUAAUU	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN5917_c0_g1_474_TPlot.pdf
TRINITY_DN5917_c0_g1:476	si_a546	TRINITY_DN5917_c0_g1	463	485	476	-28.60	-19.60	0.685314685314685	4.5	1-13,485-473;14-19,471-466;20-21,464-463	x-x,472-472[BULt];x-x,465-465[BULt]	((.((((((.(((((((((((((&)))))))))))))-))))))-))	GAUUAAGGAUAAUGGAUUGAAUC&GGUUCAAUCUAUU-UCUUUA-UC	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN5917_c0_g1_476_TPlot.pdf
TRINITY_DN5917_c0_g1:756	si_a323	TRINITY_DN5917_c0_g1	744	765	756	-26.80	-17.70	0.66044776119403	8.5	1-4,765-762;6-16,760-750;17-19,748-746	5-5,761-761[SIL];x-x,749-749[BULt];20-21,745-744[UP3]	..(((.(((((((((((.((((&)))).)))))))))))-)))..	CUGGAUGUGGAGGAAUCUUGGA&UCCAUGAUUUUUUUAU-UCCUU	3	0.99999996276671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN5917_c0_g1_756_TPlot.pdf
TRINITY_DN5917_c0_g1:757	si_a322	TRINITY_DN5917_c0_g1	745	766	757	-27.00	-19.00	0.703703703703704	7.5	1-5,766-762;7-17,760-750;18-20,748-746	6-6,761-761[SIL];x-x,749-749[BULt];21-21,745-745[UP3]	.(((.(((((((((((.(((((&))))).)))))))))))-))).	UGGAUGUGGAGGAAUCUUGGAU&AUCCAUGAUUUUUUUAU-UCCU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN5917_c0_g1_757_TPlot.pdf
TRINITY_DN5917_c0_g1:758	si_a321	TRINITY_DN5917_c0_g1	746	767	758	-26.70	-19.40	0.726591760299625	6.5	1-6,767-762;8-18,760-750;19-21,748-746	7-7,761-761[SIL];x-x,749-749[BULt]	(((.(((((((((((.((((((&)))))).)))))))))))-)))	GGAUGUGGAGGAAUCUUGGAUG&UAUCCAUGAUUUUUUUAU-UCC	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN5917_c0_g1_758_TPlot.pdf
TRINITY_DN5917_c0_g1:759	si_a320	TRINITY_DN5917_c0_g1	747	768	759	-24.40	-16.30	0.668032786885246	7.5	2-7,767-762;9-19,760-750;20-21,748-747	1-1,768-768[UP5];8-8,761-761[SIL];x-x,749-749[BULt]	((.(((((((((((.((((((.&.)))))).)))))))))))-))	GAUGUGGAGGAAUCUUGGAUGU&UUAUCCAUGAUUUUUUUAU-UC	3	0.999999815717802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN5917_c0_g1_759_TPlot.pdf
TRINITY_DN5917_c0_g1:760	si_a319	TRINITY_DN5917_c0_g1	749	769	760	-22.40	-16.10	0.71875	9.5	3-8,767-762;10-20,760-750	1-2,769-768[UP5];9-9,761-761[SIL];21-21,749-749[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGUGGAGGAAUCUUGGAUGUU&UUUAUCCAUGAUUUUUUUAUU	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5917_c0_g1_760_TPlot.pdf
TRINITY_DN5917_c0_g1:819	si_a865	TRINITY_DN5917_c0_g1	808	828	819	-24.00	-17.00	0.708333333333333	9.5	1-3,828-826;6-10,823-819;12-20,817-809	4-5,825-824[SIL];11-11,818-818[SIL];21-21,808-808[UP3]	.(((((((((.(((((..(((&)))..))))).))))))))).	UGCUGAGUCUAUAGUAUCUGG&CCAAUUAUUAAAGAUUUAGUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN5917_c0_g1_819_TPlot.pdf
TRINITY_DN5917_c0_g1:821	si_a863	TRINITY_DN5917_c0_g1	810	830	821	-24.40	-17.20	0.704918032786885	8	2-5,829-826;8-12,823-819;14-21,817-810	1-1,830-830[UP5];6-7,825-824[SIL];13-13,818-818[SIL]	((((((((.(((((..((((.&.))))..))))).))))))))	CUGAGUCUAUAGUAUCUGGAG&AUCCAAUUAUUAAAGAUUUAG	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN5917_c0_g1_821_TPlot.pdf
TRINITY_DN5917_c0_g2:624	si_a406	TRINITY_DN5917_c0_g2	613	633	624	-19.80	-13.90	0.702020202020202	7	1-13,633-621;15-20,619-614	14-14,620-620[SIL];21-21,613-613[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AUUGGAUUUGAAUAAGACGAU&AUUGUUUUGUUUAUAUUUAAA	3	0.999999999991637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN5917_c0_g2_624_TPlot.pdf
TRINITY_DN5917_c0_g2:625	si_a405	TRINITY_DN5917_c0_g2	614	634	625	-19.80	-14.90	0.752525252525252	5.5	1-14,634-621;16-21,619-614	15-15,620-620[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UUGGAUUUGAAUAAGACGAUU&AAUUGUUUUGUUUAUAUUUAA	3	0.999951779956384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN5917_c0_g2_625_TPlot.pdf
TRINITY_DN5917_c0_g2:626	si_a404	TRINITY_DN5917_c0_g2	615	635	626	-21.70	-14.40	0.663594470046083	6.5	2-15,634-621;17-21,619-615	1-1,635-635[UP5];16-16,620-620[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	UGGAUUUGAAUAAGACGAUUA&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN5917_c0_g2_626_TPlot.pdf
TRINITY_DN5917_c0_g2:900	si_a863	TRINITY_DN5917_c0_g2	889	908	900	-24.40	-17.10	0.700819672131148	6.5	2-7,907-902;9-19,901-891	1-1,908-908[UP5];8-8,x-x[BULq];20-21,890-889[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	AGGAAUCUUUGAU-AUUGGAG&AUCCAAUUAUUAAAGAUUUAG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN5917_c0_g2_900_TPlot.pdf
TRINITY_DN5917_c0_g2:901	si_a862	TRINITY_DN5917_c0_g2	890	909	901	-22.70	-17.10	0.753303964757709	7.5	3-8,907-902;10-20,901-891	1-2,909-908[UP5];9-9,x-x[BULq];21-21,890-890[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	GGAAUCUUUGAU-AUUGGAGG&AAUCCAAUUAUUAAAGAUUUA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN5917_c0_g2_901_TPlot.pdf
TRINITY_DN5917_c0_g2:902	si_a861	TRINITY_DN5917_c0_g2	891	910	902	-22.30	-16.70	0.748878923766816	8	4-9,907-902;11-21,901-891	1-3,910-908[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	GAAUCUUUGAU-AUUGGAGGU&AAAUCCAAUUAUUAAAGAUUU	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN5917_c0_g2_902_TPlot.pdf
TRINITY_DN5917_c0_g2:954	si_a865	TRINITY_DN5917_c0_g2	943	963	954	-24.00	-16.60	0.691666666666667	8	1-3,963-961;6-10,958-954;12-20,952-944	4-5,960-959[SIL];11-11,953-953[SIL];21-21,943-943[UP3]	.(((((((((.(((((..(((&)))..))))).))))))))).	UGCUGAAUCUAUAAUAUCUGG&CCAAUUAUUAAAGAUUUAGUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN5917_c0_g2_954_TPlot.pdf
TRINITY_DN5918_c0_g1:1174	si_s530	TRINITY_DN5918_c0_g1	1162	1183	1174	-29.50	-21.60	0.732203389830508	7.5	2-14,1182-1170;15-19,1168-1164	1-1,1183-1183[UP5];x-x,1169-1169[BULt];20-21,1163-1162[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	AACGGAUACGAAGGUGGUUUCA&CGAAAUCAUUUUUG-AUCCGAU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN5918_c0_g1_1174_TPlot.pdf
TRINITY_DN5918_c0_g1:1176	si_s528	TRINITY_DN5918_c0_g1	1164	1185	1176	-29.40	-21.60	0.73469387755102	9.5	4-16,1182-1170;17-21,1168-1164	1-3,1185-1183[UP5];x-x,1169-1169[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	CGGAUACGAAGGUGGUUUCAGU&UUCGAAAUCAUUUUUG-AUCCG	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN5918_c0_g1_1176_TPlot.pdf
TRINITY_DN5918_c0_g1:1177	si_s527	TRINITY_DN5918_c0_g1	1165	1186	1177	-28.00	-19.20	0.685714285714286	11	5-17,1182-1170;18-21,1168-1165	1-4,1186-1183[UP5];x-x,1169-1169[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GGAUACGAAGGUGGUUUCAGUG&AUUCGAAAUCAUUUUUG-AUCC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN5918_c0_g1_1177_TPlot.pdf
TRINITY_DN5918_c0_g1:1577	si_a231	TRINITY_DN5918_c0_g1	1567	1586	1577	-26.90	-17.90	0.66542750929368	6.5	1-14,1586-1573;16-20,1572-1568	15-15,x-x[BULq];21-21,1567-1567[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	UUUGAA-UGGUUAUGGAGAUA&UGUUUCUAUAAUCAAUUCGAU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN5918_c0_g1_1577_TPlot.pdf
TRINITY_DN5918_c0_g1:313	si_s77	TRINITY_DN5918_c0_g1	301	322	313	-25.50	-17.10	0.670588235294118	8.5	1-4,322-319;6-11,317-312;13-21,309-301	5-5,318-318[SIL];12-12,311-310[AILt]	(((((((((..((((((.((((&)))).))))))-.)))))))))	GAAGAAGGGCCAAGAAGUGAAA&UUUUUUUUCUU-UCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN5918_c0_g1_313_TPlot.pdf
TRINITY_DN591_c0_g1:305	si_a763	TRINITY_DN591_c0_g1	294	315	305	-28.80	-19.20	0.666666666666667	6	1-7,315-309;8-19,307-296	x-x,308-308[BULt];20-21,295-294[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AUAAUCAAUCAAAAUAUCCAGA&UUUGGGU-UUUUGAUUGAUUCA	2	0.999991491863399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN591_c0_g1_305_TPlot.pdf
TRINITY_DN591_c0_g1:595	si_s80	TRINITY_DN591_c0_g1	584	604	595	-28.20	-21.50	0.762411347517731	10.5	3-19,602-586	1-2,604-603[UP5];20-21,585-584[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CCAGAAGAGGGGGAGGAGGUG&UUUUUCUUUCCUUUCUUCUUC	4	0.999999913764069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN591_c0_g1_595_TPlot.pdf
TRINITY_DN591_c0_g1:596	si_s79	TRINITY_DN591_c0_g1	585	605	596	-26.20	-21.50	0.820610687022901	11	4-20,602-586	1-3,605-603[UP5];21-21,585-585[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAGAAGAGGGGGAGGAGGUGG&UUUUUUCUUUCCUUUCUUCUU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN591_c0_g1_596_TPlot.pdf
TRINITY_DN591_c0_g1:601	si_s810	TRINITY_DN591_c0_g1	590	610	601	-27.90	-19.40	0.695340501792115	10.5	1-17,610-594	18-21,593-590[UP3]	....(((((((((((((((((&)))))))))))))))))....	GAGGGGGAGGAGGUGGUGGAG&CUUCGUUACCUUUUCUUAAUA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN591_c0_g1_601_TPlot.pdf
TRINITY_DN591_c0_g1:606	si_s805	TRINITY_DN591_c0_g1	595	615	606	-28.60	-18.90	0.660839160839161	9.5	1-3,615-613;5-21,611-595	4-4,612-612[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	GGAGGAGGUGGUGGAGGAAGA&UUUAUCUUCGUUACCUUUUCU	4	0.99999999998891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN591_c0_g1_606_TPlot.pdf
TRINITY_DN5920_c0_g1:1136	si_a414	TRINITY_DN5920_c0_g1	1125	1145	1136	-18.10	-13.10	0.723756906077348	6	1-7,1145-1139;10-19,1136-1127	8-9,1138-1137[SIL];20-21,1126-1125[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	UUUAUUUAUUUAUCUAUAAAC&GUUUAUAUUUAAAUAAAUAUA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN5920_c0_g1_1136_TPlot.pdf
TRINITY_DN5920_c0_g1:1138	si_a412	TRINITY_DN5920_c0_g1	1127	1147	1138	-18.30	-13.20	0.721311475409836	7	3-9,1145-1139;12-21,1136-1127	1-2,1147-1146[UP5];10-11,1138-1137[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	UAUUUAUUUAUCUAUAAACUG&UUGUUUAUAUUUAAAUAAAUA	1	0.0590448281751109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN5920_c0_g1_1138_TPlot.pdf
TRINITY_DN5920_c1_g1:1457	si_a762	TRINITY_DN5920_c1_g1	1446	1467	1457	-29.70	-23.70	0.797979797979798	8	1-6,1467-1462;8-9,1460-1459;10-21,1457-1446	7-7,1461-1461[SIL];x-x,1458-1458[BULt]	((((((((((((.((.((((((&)))))).))-))))))))))))	GAGUCAGUCAGAUAGGCCGAAG&CUUUGGGUU-UUUGAUUGAUUC	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN5920_c1_g1_1457_TPlot.pdf
TRINITY_DN5920_c1_g1:6670	si_s600	TRINITY_DN5920_c1_g1	6659	6679	6670	-28.20	-18.60	0.659574468085106	9	2-13,6678-6667	1-1,6679-6679[UP5];14-21,6666-6659[UP3]	........((((((((((((.&.))))))))))))........	AAGCCUGCAUUCGCUUGGAUA&AAUCCAAGCGAAUCUUUUUUA	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN5920_c1_g1_6670_TPlot.pdf
TRINITY_DN5920_c1_g1:6892	si_s442	TRINITY_DN5920_c1_g1	6880	6901	6892	-23.80	-15.50	0.651260504201681	7	1-13,6901-6889;14-17,6887-6884	x-x,6888-6888[BULt];18-21,6883-6880[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	AAAAGUUAUUAUAUAGUGUGUA&UACAUAUUAUAUA-UAACAACA	0	0.0888568398094671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN5920_c1_g1_6892_TPlot.pdf
TRINITY_DN5920_c1_g1:6895	si_s439	TRINITY_DN5920_c1_g1	6883	6904	6895	-21.50	-16.40	0.762790697674419	7	3-16,6902-6889;17-20,6887-6884	1-2,6904-6903[UP5];x-x,6888-6888[BULt];21-21,6883-6883[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	AGUUAUUAUAUAGUGUGUAAAU&AAUUACAUAUUAUAUA-UAACA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN5920_c1_g1_6895_TPlot.pdf
TRINITY_DN5920_c1_g1:6898	si_s436	TRINITY_DN5920_c1_g1	6887	6907	6898	-19.60	-13.50	0.688775510204082	12.5	6-19,6902-6889	1-5,6907-6903[UP5];20-21,6888-6887[UP3]	..((((((((((((((.....&.....))))))))))))))..	AUUAUAUAGUGUGUAAAUUUU&AAUAAUUACAUAUUAUAUAUA	4	0.99965361184813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN5920_c1_g1_6898_TPlot.pdf
TRINITY_DN5920_c1_g1:6901	si_s433	TRINITY_DN5920_c1_g1	6890	6910	6901	-21.10	-14.18	0.672037914691943	8	2-5,6909-6906;9-21,6902-6890	1-1,6910-6910[UP5];6-8,6905-6903[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	AUAUAGUGUGUAAAUUUUGUA&AACAAUAAUUACAUAUUAUAU	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN5920_c1_g1_6901_TPlot.pdf
TRINITY_DN59219_c0_g1:261	si_s2	TRINITY_DN59219_c0_g1	249	270	261	-20.50	-13.40	0.653658536585366	4.5	1-12,270-259;14-17,257-254;19-21,251-249	13-13,258-258[SIL];18-18,253-252[AILt]	(((..((((.((((((((((((&)))))))))))).))))-.)))	GUACUUGAUUAGUAGUAUAAAA&UUUUAUAUUACUUAUUA-UUAC	4	0.999998884855311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN59219_c0_g1_261_TPlot.pdf
TRINITY_DN5924_c0_g2:915	si_s612	TRINITY_DN5924_c0_g2	903	924	915	-28.20	-18.70	0.663120567375887	8	1-12,924-913;13-14,911-910;16-19,908-905	x-x,912-912[BULt];15-15,909-909[SIL];20-21,904-903[UP3]	..((((.((.((((((((((((&))))))))))))-)).))))..	AACGCUAGGUAUUUAGGAGAGA&UCUUUUUUAAAU-CCAAGCGAU	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN5924_c0_g2_915_TPlot.pdf
TRINITY_DN5928_c0_g1:1532	si_a763	TRINITY_DN5928_c0_g1	1521	1542	1532	-28.80	-19.40	0.673611111111111	6.5	2-5,1541-1538;6-20,1536-1522	1-1,1542-1542[UP5];x-x,1537-1537[BULt];21-21,1521-1521[UP3]	.(((((((((((((((.((((.&.))))-))))))))))))))).	AGAGUUGAUUAAAAACGCCAAU&UUUGG-GUUUUUGAUUGAUUCA	4	0.999999843083262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN5928_c0_g1_1532_TPlot.pdf
TRINITY_DN592_c0_g1:4030	si_a588	TRINITY_DN592_c0_g1	4018	4039	4030	-29.00	-20.10	0.693103448275862	8.5	5-14,4035-4026;15-21,4024-4018	1-4,4039-4036[UP5];x-x,4025-4025[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	AGAAUUCAUGUCCUUCUUUAGG&UAACAAGAAGGACA-GAAUUUU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN592_c0_g1_4030_TPlot.pdf
TRINITY_DN592_c0_g1:5578	si_a428	TRINITY_DN592_c0_g1	5566	5587	5578	-31.80	-21.70	0.682389937106918	9.5	3-9,5585-5579;12-15,5576-5573;16-20,5571-5567	1-2,5587-5586[UP5];10-11,5578-5577[SIL];x-x,5572-5572[BULt];21-21,5566-5566[UP3]	.(((((.((((..(((((((..&..)))))))..))))-))))).	AAUCCGUACGGUGCCUAUAUGG&AAAUAUAGGAUCCGU-UGGAUA	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN592_c0_g1_5578_TPlot.pdf
TRINITY_DN592_c0_g1:6036	si_s634	TRINITY_DN592_c0_g1	6024	6045	6036	-38.30	-25.00	0.652741514360313	8.5	2-7,6044-6039;9-13,6037-6033;14-15,6031-6030;17-21,6028-6024	1-1,6045-6045[UP5];8-8,6038-6038[SIL];x-x,6032-6032[BULt];16-16,6029-6029[SIL]	(((((.((.(((((.((((((.&.)))))).)))))-)).)))))	GAGGGGAAUGCGCUGGCGAGAC&UUUUCGUAGGCGU-UUGCCCUC	4	0.999994646216814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN592_c0_g1_6036_TPlot.pdf
TRINITY_DN592_c0_g1:6267	si_a406	TRINITY_DN592_c0_g1	6256	6276	6267	-19.80	-13.90	0.702020202020202	10.5	1-14,6276-6263	15-21,6262-6256[UP3]	.......((((((((((((((&)))))))))))))).......	UCUUAUGGUAGGCAAAACGAU&AUUGUUUUGUUUAUAUUUAAA	4	0.99999999997982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN592_c0_g1_6267_TPlot.pdf
TRINITY_DN592_c0_g1:6268	si_a405	TRINITY_DN592_c0_g1	6257	6277	6268	-19.80	-14.20	0.717171717171717	10.5	2-15,6276-6263	1-1,6277-6277[UP5];16-21,6262-6257[UP3]	......((((((((((((((.&.))))))))))))))......	CUUAUGGUAGGCAAAACGAUG&AAUUGUUUUGUUUAUAUUUAA	2	0.999996017905752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN592_c0_g1_6268_TPlot.pdf
TRINITY_DN592_c0_g1:6297	si_a762	TRINITY_DN592_c0_g1	6287	6307	6297	-29.70	-19.40	0.653198653198653	7	1-6,6307-6302;7-17,6300-6290;19-21,6289-6287	x-x,6301-6301[BULt];18-18,x-x[BULq]	(((-(((((((((((.((((((&))))))-))))))))))).)))	GAG-CGAUCAAAAACGCUGGAG&CUUUGG-GUUUUUGAUUGAUUC	4	0.999999999787718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN592_c0_g1_6297_TPlot.pdf
TRINITY_DN592_c0_g1:6378	si_s424	TRINITY_DN592_c0_g1	6367	6387	6378	-22.90	-16.10	0.703056768558952	3.5	1-13,6387-6375;15-16,6373-6372;18-21,6370-6367	14-14,6374-6374[SIL];17-17,6371-6371[SIL]	((((.((.(((((((((((((&))))))))))))).)).))))	GUAACUGGUGUUAUAUGGAAU&AUUCUAUAUAACAAUAAUUAC	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN592_c0_g1_6378_TPlot.pdf
TRINITY_DN592_c0_g1:6379	si_s423	TRINITY_DN592_c0_g1	6368	6388	6379	-21.50	-15.10	0.702325581395349	8	1-14,6388-6375	15-21,6374-6368[UP3]	.......((((((((((((((&)))))))))))))).......	UAACUGGUGUUAUAUGGAAUA&UAUUCUAUAUAACAAUAAUUA	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN592_c0_g1_6379_TPlot.pdf
TRINITY_DN592_c0_g1:6380	si_s422	TRINITY_DN592_c0_g1	6369	6389	6380	-21.30	-16.40	0.769953051643192	7	1-15,6389-6375	16-21,6374-6369[UP3]	......(((((((((((((((&)))))))))))))))......	AACUGGUGUUAUAUGGAAUAU&AUAUUCUAUAUAACAAUAAUU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN592_c0_g1_6380_TPlot.pdf
TRINITY_DN592_c0_g1:6381	si_s421	TRINITY_DN592_c0_g1	6370	6390	6381	-23.00	-18.90	0.821739130434783	6	1-16,6390-6375	17-21,6374-6370[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACUGGUGUUAUAUGGAAUAUG&CAUAUUCUAUAUAACAAUAAU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN592_c0_g1_6381_TPlot.pdf
TRINITY_DN592_c0_g1:6388	si_s414	TRINITY_DN592_c0_g1	6377	6397	6388	-24.90	-19.70	0.791164658634538	9.5	6-21,6392-6377	1-5,6397-6393[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAUAUGGAAUAUGUCUUCUU&AAAACGACAUAUUCUAUAUAA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN592_c0_g1_6388_TPlot.pdf
TRINITY_DN592_c0_g1:6556	si_s550	TRINITY_DN592_c0_g1	6545	6564	6556	-20.30	-13.22	0.651231527093596	11	1-2,6564-6563;7-21,6559-6545	3-6,6562-6560[AILq]	(((((((((((((((...-((&))....)))))))))))))))	GAAAUGUUAGUUCUGCUG-GA&UCAAAAUAGAAUUAAUAUUUU	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN592_c0_g1_6556_TPlot.pdf
TRINITY_DN592_c0_g3:1372	si_s74	TRINITY_DN592_c0_g3	1361	1380	1372	-25.00	-16.70	0.668	8.5	1-5,1380-1376;8-18,1374-1364	6-7,1375-1375[AILq];19-21,1363-1361[UP3]	...(((((((((((.-(((((&)))))..)))))))))))...	UAUAGGAGAGAAGAU-AAUAG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN592_c0_g3_1372_TPlot.pdf
TRINITY_DN592_c0_g3:1374	si_s72	TRINITY_DN592_c0_g3	1363	1382	1374	-24.10	-18.20	0.755186721991701	7.5	1-7,1382-1376;10-20,1374-1364	8-9,1375-1375[AILq];21-21,1363-1363[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	UAGGAGAGAAGAU-AAUAGGA&UUCUAUUUUUUUUCUUUCCUU	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN592_c0_g3_1374_TPlot.pdf
TRINITY_DN592_c0_g3:2479	si_a16	TRINITY_DN592_c0_g3	2468	2488	2479	-26.30	-17.10	0.650190114068441	6	1-8,2488-2481;10-17,2479-2472	9-9,2480-2480[SIL];18-21,2471-2468[UP3]	....((((((((.((((((((&)))))))).))))))))....	UAACAAAAUAAACAGGCUUUC&GAAAGCCUAUUUAUUUUUAGU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN592_c0_g3_2479_TPlot.pdf
TRINITY_DN59367_c0_g1:117	si_a488	TRINITY_DN59367_c0_g1	106	126	117	-26.40	-17.58	0.665909090909091	10.5	3-7,124-120;11-21,116-106	1-2,126-125[UP5];8-10,119-117[SIL]	(((((((((((...(((((..&..)))))...)))))))))))	GAAAAACGGCAGCAUCUGUUA&AUAUAGAAUAUGUCGUUUUUC	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN59367_c0_g1_117_TPlot.pdf
TRINITY_DN5936_c0_g1:1541	si_a796	TRINITY_DN5936_c0_g1	1526	1551	1541	-32.70	-23.00	0.703363914373089	8	1-6,1551-1546;7-16,1544-1535;17-21,1530-1526	x-x,1545-1545[BULt];x-x,1534-1531[BULt]	(((((....((((((((((.((((((&))))))-))))))))))----)))))	GCUUCCUAAGGGUUGGAAAUAUGGAG&UUCUAU-UUUCCAAUCC----GAAGC	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN5936_c0_g1_1541_TPlot.pdf
TRINITY_DN5936_c0_g1:1544	si_a793	TRINITY_DN5936_c0_g1	1533	1554	1544	-28.50	-18.90	0.663157894736842	10.5	3-9,1552-1546;10-19,1544-1535	1-2,1554-1553[UP5];x-x,1545-1545[BULt];20-21,1534-1533[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	AAGGGUUGGAAAUAUGGAGGUU&UUUUUCUAU-UUUCCAAUCCGA	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN5936_c0_g1_1544_TPlot.pdf
TRINITY_DN5936_c0_g1:2008	si_s251	TRINITY_DN5936_c0_g1	1997	2017	2008	-32.90	-23.90	0.726443768996961	5.5	1-12,2017-2006;14-18,2004-2000	13-13,2005-2005[SIL];19-21,1999-1997[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GUCUGAUAAGUCGGGAAAUGC&GCAUUUCCCGAUAUAUUACUC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s251_TRINITY_DN5936_c0_g1_2008_TPlot.pdf
TRINITY_DN5936_c0_g1:2011	si_s248	TRINITY_DN5936_c0_g1	2000	2020	2011	-31.90	-24.10	0.755485893416928	7	4-15,2017-2006;17-21,2004-2000	1-3,2020-2018[UP5];16-16,2005-2005[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UGAUAAGUCGGGAAAUGCGCC&UAGGCAUUUCCCGAUAUAUUA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN5936_c0_g1_2011_TPlot.pdf
TRINITY_DN5936_c0_g1:2455	si_a84	TRINITY_DN5936_c0_g1	2441	2464	2455	-24.90	-16.30	0.654618473895582	8	1-11,2464-2454;12-14,2451-2449;16-20,2446-2442	x-x,2453-2452[BULt];15-15,2448-2447[AILt];21-21,2441-2441[UP3]	.(((((..(((..(((((((((((&)))))))))))--)))-.))))).	AACCUUGGUCUAAUAAUGAUGAAA&UUUCAUUAUUA--AGA-AAAGGUA	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN5936_c0_g1_2455_TPlot.pdf
TRINITY_DN5936_c0_g1:2456	si_a83	TRINITY_DN5936_c0_g1	2442	2465	2456	-24.50	-16.70	0.681632653061224	7	1-12,2465-2454;13-15,2451-2449;17-21,2446-2442	x-x,2453-2452[BULt];16-16,2448-2447[AILt]	(((((..(((..((((((((((((&))))))))))))--)))-.)))))	ACCUUGGUCUAAUAAUGAUGAAAA&UUUUCAUUAUUA--AGA-AAAGGU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN5936_c0_g1_2456_TPlot.pdf
TRINITY_DN5936_c0_g1:2457	si_a82	TRINITY_DN5936_c0_g1	2443	2466	2457	-23.70	-15.60	0.658227848101266	6	2-13,2465-2454;14-16,2451-2449;18-21,2446-2443	1-1,2466-2466[UP5];x-x,2453-2452[BULt];17-17,2448-2447[AILt]	((((..(((..((((((((((((.&.))))))))))))--)))-.))))	CCUUGGUCUAAUAAUGAUGAAAAU&UUUUUCAUUAUUA--AGA-AAAGG	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN5936_c0_g1_2457_TPlot.pdf
TRINITY_DN5937_c0_g1:1531	si_a414	TRINITY_DN5937_c0_g1	1520	1540	1531	-18.10	-11.90	0.657458563535912	8.5	1-1,1540-1540;4-18,1537-1523	2-3,1539-1538[SIL];19-21,1522-1520[UP3]	...(((((((((((((((..(&)..)))))))))))))))...	CAAAUUUGUUUAAAUGUACUC&GUUUAUAUUUAAAUAAAUAUA	4	0.999999618795197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN5937_c0_g1_1531_TPlot.pdf
TRINITY_DN5937_c0_g1:1532	si_a413	TRINITY_DN5937_c0_g1	1521	1541	1532	-18.40	-12.00	0.652173913043478	8.5	2-2,1540-1540;5-19,1537-1523	1-1,1541-1541[UP5];3-4,1539-1538[SIL];20-21,1522-1521[UP3]	..(((((((((((((((..(.&.)..)))))))))))))))..	AAAUUUGUUUAAAUGUACUCG&UGUUUAUAUUUAAAUAAAUAU	2	0.999835451332914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN5937_c0_g1_1532_TPlot.pdf
TRINITY_DN5937_c0_g1:1534	si_a411	TRINITY_DN5937_c0_g1	1523	1543	1534	-17.90	-11.80	0.659217877094972	9.5	3-4,1541-1540;7-21,1537-1523	1-2,1543-1542[UP5];5-6,1539-1538[SIL]	(((((((((((((((..((..&..))..)))))))))))))))	AUUUGUUUAAAUGUACUCGCC&UUUGUUUAUAUUUAAAUAAAU	4	0.999999999997331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN5937_c0_g1_1534_TPlot.pdf
TRINITY_DN5937_c0_g1:985	si_a665	TRINITY_DN5937_c0_g1	976	994	985	-29.60	-19.30	0.652027027027027	6.5	2-12,993-983;15-20,982-977	1-1,994-994[UP5];13-14,x-x[BULq];21-21,976-976[UP3]	.((((((--(((((((((((.&.)))))))))))..)))))).	UGUAAGG--UCAAUGGGUAUC&AAUGCCUAUUGAUUCCUUAUU	4	0.999996933736392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN5937_c0_g1_985_TPlot.pdf
TRINITY_DN59384_c0_g1:163	si_s248	TRINITY_DN59384_c0_g1	153	172	163	-31.90	-23.80	0.746081504702194	5	3-14,170-159;16-21,158-153	1-2,172-171[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UGAUAU-UUGGGAAAUGCCAA&UAGGCAUUUCCCGAUAUAUUA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN59384_c0_g1_163_TPlot.pdf
TRINITY_DN5938_c0_g1:1007	si_a323	TRINITY_DN5938_c0_g1	996	1017	1007	-26.80	-17.68	0.659701492537313	14	1-7,1017-1011;13-21,1004-996	8-12,1010-1005[AILt]	(((((((((......(((((((&)))))))-.....)))))))))	AAGGAAUGGCAGCUUUCGUGGA&UCCAUGA-UUUUUUUAUUCCUU	3	0.999999988491806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN5938_c0_g1_1007_TPlot.pdf
TRINITY_DN59398_c0_g1:122	si_a401	TRINITY_DN59398_c0_g1	111	131	122	-22.60	-21.40	0.946902654867257	6	2-19,130-113	1-1,131-131[UP5];20-21,112-111[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UGGUGAACAAAGCAGUUCUAA&AUAGAAUUGUUUUGUUUAUAU	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN59398_c0_g1_122_TPlot.pdf
TRINITY_DN5939_c0_g1:1016	si_s13	TRINITY_DN5939_c0_g1	1004	1025	1016	-22.90	-15.10	0.65938864628821	7.5	2-14,1024-1012;15-18,1010-1007	1-1,1025-1025[UP5];x-x,1011-1011[BULt];19-21,1006-1004[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	AUUUCAGUUAUAGUAGUAGUAU&UUAUUAUUACUAUA-UUGAUUG	2	0.996018473863355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN5939_c0_g1_1016_TPlot.pdf
TRINITY_DN5939_c0_g1:1017	si_s12	TRINITY_DN5939_c0_g1	1005	1026	1017	-22.80	-15.10	0.662280701754386	8.5	3-15,1024-1012;16-19,1010-1007	1-2,1026-1025[UP5];x-x,1011-1011[BULt];20-21,1006-1005[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	UUUCAGUUAUAGUAGUAGUAUU&CUUAUUAUUACUAUA-UUGAUU	2	0.997889528026194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN5939_c0_g1_1017_TPlot.pdf
TRINITY_DN5939_c0_g1:1019	si_s774	TRINITY_DN5939_c0_g1	1008	1028	1019	-24.70	-16.10	0.651821862348178	7.5	1-3,1028-1026;5-18,1024-1011	4-4,1025-1025[SIL];19-21,1010-1008[UP3]	...((((((((((((((.(((&))).))))))))))))))...	CAGUUAUAGUAGUAGUAUUUG&UAAUUACUAUUGCUAUAAAAC	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN5939_c0_g1_1019_TPlot.pdf
TRINITY_DN5939_c0_g1:1020	si_s773	TRINITY_DN5939_c0_g1	1009	1029	1020	-23.10	-16.10	0.696969696969697	7.5	2-4,1028-1026;6-19,1024-1011	1-1,1029-1029[UP5];5-5,1025-1025[SIL];20-21,1010-1009[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	AGUUAUAGUAGUAGUAUUUGU&UUAAUUACUAUUGCUAUAAAA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN5939_c0_g1_1020_TPlot.pdf
TRINITY_DN5939_c0_g1:1063	si_a70	TRINITY_DN5939_c0_g1	1052	1072	1063	-23.90	-16.20	0.677824267782427	7.5	1-5,1072-1068;7-18,1066-1055	6-6,1067-1067[SIL];19-21,1054-1052[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AAAGAAAGACAAUUUAGAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999988671922528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN5939_c0_g1_1063_TPlot.pdf
TRINITY_DN5939_c0_g1:1064	si_a69	TRINITY_DN5939_c0_g1	1053	1073	1064	-24.00	-16.40	0.683333333333333	7.5	2-6,1072-1068;8-19,1066-1055	1-1,1073-1073[UP5];7-7,1067-1067[SIL];20-21,1054-1053[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	AAGAAAGACAAUUUAGAGGAU&UUCUUUCAAAUUGUUUUUCAU	3	0.999999980121405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5939_c0_g1_1064_TPlot.pdf
TRINITY_DN5939_c0_g1:1130	si_a326	TRINITY_DN5939_c0_g1	1116	1140	1130	-26.20	-18.40	0.702290076335878	8.5	2-7,1139-1134;8-13,1132-1127;14-21,1123-1116	1-1,1140-1140[UP5];x-x,1133-1133[BULt];x-x,1126-1124[BULt]	((((((((...((((((.((((((.&.))))))-))))))---))))))))	GACAAGGAGAAGUGAAACAAGUCAA&AUGAUUU-UUUUAU---UCCUUGUC	2	0.996116359839343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5939_c0_g1_1130_TPlot.pdf
TRINITY_DN5939_c0_g1:1257	si_a304	TRINITY_DN5939_c0_g1	1238	1266	1257	-30.40	-20.10	0.661184210526316	13.5	3-13,1264-1254;14-21,1245-1238	1-2,1266-1265[UP5];x-x,1253-1246[BULt]	((((((((........(((((((((((..&..)))))))))))--------))))))))	GAUGAAUCUUCCCUGACAGGUGAAUCUGA&AAAGAUUCGCUUG--------GAUUUAUC	2	0.975799899695385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN5939_c0_g1_1257_TPlot.pdf
TRINITY_DN5939_c0_g1:1519	si_s803	TRINITY_DN5939_c0_g1	1508	1528	1519	-26.00	-18.60	0.715384615384615	14.5	7-18,1522-1511	1-6,1528-1523[UP5];19-21,1510-1508[UP3]	...((((((((((((......&......))))))))))))...	AACAGGUGACGAAGAAAACGU&AUUUUAUCUUCGUUACCUUUU	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN5939_c0_g1_1519_TPlot.pdf
TRINITY_DN5939_c0_g1:1520	si_s802	TRINITY_DN5939_c0_g1	1509	1529	1520	-26.40	-18.60	0.704545454545455	15.5	8-19,1522-1511	1-7,1529-1523[UP5];20-21,1510-1509[UP3]	..((((((((((((.......&.......))))))))))))..	ACAGGUGACGAAGAAAACGUA&UAUUUUAUCUUCGUUACCUUU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5939_c0_g1_1520_TPlot.pdf
TRINITY_DN5939_c0_g1:1521	si_s801	TRINITY_DN5939_c0_g1	1510	1530	1521	-28.20	-18.60	0.659574468085106	16.5	9-20,1522-1511	1-8,1530-1523[UP5];21-21,1510-1510[UP3]	.((((((((((((........&........)))))))))))).	CAGGUGACGAAGAAAACGUAA&GUAUUUUAUCUUCGUUACCUU	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN5939_c0_g1_1521_TPlot.pdf
TRINITY_DN5939_c0_g1:776	si_a157	TRINITY_DN5939_c0_g1	762	785	776	-29.00	-19.00	0.655172413793103	8	2-10,784-776;12-15,774-771;16-21,767-762	1-1,785-785[UP5];11-11,775-775[SIL];x-x,770-768[BULt]	((((((...((((.(((((((((.&.))))))))).))))---))))))	GUGGAUCACAGGUAGACCUUGAAC&UUUUAAGGUCAAUCU---AUUCAC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a157_TRINITY_DN5939_c0_g1_776_TPlot.pdf
TRINITY_DN5939_c0_g1:8559	si_a638	TRINITY_DN5939_c0_g1	8548	8568	8559	-24.40	-15.90	0.651639344262295	5.5	1-18,8568-8551	19-21,8550-8548[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAAAUUAUUUAAAAAAAUUGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999999997943882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN5939_c0_g1_8559_TPlot.pdf
TRINITY_DN5939_c0_g1:973	si_a320	TRINITY_DN5939_c0_g1	961	982	973	-24.40	-17.40	0.713114754098361	8	2-13,981-970;14-20,968-962	1-1,982-982[UP5];x-x,969-969[BULt];21-21,961-961[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	UGAUGAAACAGGUCAUGGGUGG&UUAUCCAUGAUUU-UUUUAUUC	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN5939_c0_g1_973_TPlot.pdf
TRINITY_DN5939_c0_g1:974	si_a319	TRINITY_DN5939_c0_g1	962	983	974	-22.40	-18.80	0.839285714285714	6.5	1-14,983-970;15-21,968-962	x-x,969-969[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GAUGAAACAGGUCAUGGGUGGA&UUUAUCCAUGAUUU-UUUUAUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5939_c0_g1_974_TPlot.pdf
TRINITY_DN5939_c0_g1:975	si_a318	TRINITY_DN5939_c0_g1	963	984	975	-22.50	-19.00	0.844444444444444	5.5	1-15,984-970;16-21,968-963	x-x,969-969[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	AUGAAACAGGUCAUGGGUGGAU&AUUUAUCCAUGAUUU-UUUUAU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5939_c0_g1_975_TPlot.pdf
TRINITY_DN5939_c0_g1:976	si_a317	TRINITY_DN5939_c0_g1	964	985	976	-24.30	-18.10	0.744855967078189	6.5	2-16,984-970;17-21,968-964	1-1,985-985[UP5];x-x,969-969[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	UGAAACAGGUCAUGGGUGGAUA&GAUUUAUCCAUGAUUU-UUUUA	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN5939_c0_g1_976_TPlot.pdf
TRINITY_DN5939_c0_g1:980	si_a313	TRINITY_DN5939_c0_g1	969	989	980	-28.70	-19.10	0.665505226480836	9	1-3,989-987;6-20,984-970	4-5,986-985[SIL];21-21,969-969[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	CAGGUCAUGGGUGGAUAGAAG&CUUGGAUUUAUCCAUGAUUUU	3	0.999948760723328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN5939_c0_g1_980_TPlot.pdf
TRINITY_DN593_c0_g1:134	si_s184	TRINITY_DN593_c0_g1	123	143	134	-33.40	-22.20	0.664670658682635	11	1-11,143-133	12-21,132-123[UP3]	..........(((((((((((&)))))))))))..........	AACCCCAACAGUUACUCGGGC&GCCCGAGUAACGAUUAUUUUG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN593_c0_g1_134_TPlot.pdf
TRINITY_DN593_c0_g1:135	si_s183	TRINITY_DN593_c0_g1	124	144	135	-32.40	-22.30	0.688271604938272	10	2-12,143-133	1-1,144-144[UP5];13-21,132-124[UP3]	.........(((((((((((.&.))))))))))).........	ACCCCAACAGUUACUCGGGCG&UGCCCGAGUAACGAUUAUUUU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN593_c0_g1_135_TPlot.pdf
TRINITY_DN593_c0_g1:392	si_s84	TRINITY_DN593_c0_g1	381	401	392	-32.30	-21.80	0.674922600619195	4.5	1-13,401-389;15-19,387-383	14-14,388-388[SIL];20-21,382-381[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AUGAGAAAAAGAAAGGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN593_c0_g1_392_TPlot.pdf
TRINITY_DN593_c0_g1:396	si_s80	TRINITY_DN593_c0_g1	385	405	396	-28.20	-23.00	0.815602836879433	4	1-17,405-389;19-21,387-385	18-18,388-388[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	GAAAAAGAAAGGGAAGAGAGA&UUUUUCUUUCCUUUCUUCUUC	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN593_c0_g1_396_TPlot.pdf
TRINITY_DN593_c0_g1:398	si_s78	TRINITY_DN593_c0_g1	387	407	398	-26.20	-20.90	0.797709923664122	8	3-19,405-389	1-2,407-406[UP5];20-21,388-387[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAGAAAGGGAAGAGAGACC&UUUUUUUCUUUCCUUUCUUCU	4	0.999988024589162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN593_c0_g1_398_TPlot.pdf
TRINITY_DN593_c0_g1:401	si_s75	TRINITY_DN593_c0_g1	390	410	401	-24.00	-20.00	0.833333333333333	11.5	6-21,405-390	1-5,410-406[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAAGGGAAGAGAGACCAAG&UAUUUUUUUUCUUUCCUUUCU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN593_c0_g1_401_TPlot.pdf
TRINITY_DN593_c0_g1:402	si_s74	TRINITY_DN593_c0_g1	391	411	402	-25.00	-18.70	0.748	13.5	7-21,405-391	1-6,411-406[UP5]	(((((((((((((((......&......)))))))))))))))	GAAAGGGAAGAGAGACCAAGA&CUAUUUUUUUUCUUUCCUUUC	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN593_c0_g1_402_TPlot.pdf
TRINITY_DN593_c3_g1:2152	si_a496	TRINITY_DN593_c3_g1	2142	2161	2152	-32.40	-21.40	0.660493827160494	5	2-12,2160-2150;14-19,2149-2144	1-1,2161-2161[UP5];13-13,x-x[BULq];20-21,2143-2142[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	ACGAAGAC-AAAGACGACAUU&UAUGUCGUUUUUCGUCUUCCU	2	0.999999938434399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN593_c3_g1_2152_TPlot.pdf
TRINITY_DN593_c3_g1:2236	si_s802	TRINITY_DN593_c3_g1	2225	2245	2236	-26.40	-17.30	0.65530303030303	16.5	8-18,2238-2228	1-7,2245-2239[UP5];19-21,2227-2225[UP3]	...(((((((((((.......&.......)))))))))))...	ACUGGUAGCGAAGACUCUACA&UAUUUUAUCUUCGUUACCUUU	4	0.999999999998374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN593_c3_g1_2236_TPlot.pdf
TRINITY_DN593_c4_g1:235	si_s100	TRINITY_DN593_c4_g1	221	245	235	-33.70	-22.70	0.673590504451039	12	1-3,245-243;4-12,241-233;13-17,229-225	x-x,242-242[BULt];x-x,232-230[BULt];18-21,224-221[UP3]	....(((((...(((((((((.(((&)))-)))))))))---)))))....	AUGGUCCAAGUUUCCGAAGCGUAAG&CUU-CGCUUCGGA---UUGGAAAAU	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN593_c4_g1_235_TPlot.pdf
TRINITY_DN593_c4_g1:236	si_s99	TRINITY_DN593_c4_g1	222	246	236	-34.60	-24.30	0.702312138728324	8	1-4,246-243;5-13,241-233;14-18,229-225	x-x,242-242[BULt];x-x,232-230[BULt];19-21,224-222[UP3]	...(((((...(((((((((.((((&))))-)))))))))---)))))...	UGGUCCAAGUUUCCGAAGCGUAAGA&UCUU-CGCUUCGGA---UUGGAAAA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN593_c4_g1_236_TPlot.pdf
TRINITY_DN5940_c0_g1:1984	si_s6	TRINITY_DN5940_c0_g1	1970	1993	1984	-21.70	-14.60	0.672811059907834	12.5	4-11,1990-1983;12-21,1979-1970	1-3,1993-1991[UP5];x-x,1982-1980[BULt]	((((((((((...((((((((...&...))))))))---))))))))))	UAUAGUAGUAGAAAUGAGUAAGUA&AUAUUACUUAU---UAUUACUAUA	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN5940_c0_g1_1984_TPlot.pdf
TRINITY_DN5940_c1_g2:1488	si_a861	TRINITY_DN5940_c1_g2	1477	1497	1488	-22.30	-15.20	0.681614349775785	7	3-11,1495-1487;14-20,1484-1478	1-2,1497-1496[UP5];12-13,1486-1485[SIL];21-21,1477-1477[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	UAAUCUUUCCUAAUUGGAUCA&AAAUCCAAUUAUUAAAGAUUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a861_TRINITY_DN5940_c1_g2_1488_TPlot.pdf
TRINITY_DN5940_c1_g2:1585	si_a318	TRINITY_DN5940_c1_g2	1574	1594	1585	-22.50	-15.70	0.697777777777778	11	6-12,1589-1583;14-21,1581-1574	1-5,1594-1590[UP5];13-13,1582-1582[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AUGAAAGAUUCAUGGAAUUCA&AUUUAUCCAUGAUUUUUUUAU	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5940_c1_g2_1585_TPlot.pdf
TRINITY_DN5940_c1_g2:450	si_a503	TRINITY_DN5940_c1_g2	438	459	450	-32.10	-21.60	0.672897196261682	7.5	2-4,458-456;6-16,454-444;17-20,442-439	1-1,459-459[UP5];5-5,455-455[SIL];x-x,443-443[BULt];21-21,438-438[UP3]	.((((.(((((((((((.(((.&.))).)))))))))))-)))).	AGUUCACAAGGAAGGCGCGAAU&UUUUUCGUCUUCCUUG-GAAUG	4	0.999998973233313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN5940_c1_g2_450_TPlot.pdf
TRINITY_DN5940_c1_g2:56	si_a395	TRINITY_DN5940_c1_g2	45	65	56	-24.70	-16.90	0.684210526315789	5.5	1-14,65-52;17-21,49-45	15-16,51-50[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	GCAAGUAGAUUCUGUAUUUUU&AAGAAUAUAGAAUUGUUUUGU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN5940_c1_g2_56_TPlot.pdf
TRINITY_DN59433_c0_g1:138	si_a23	TRINITY_DN59433_c0_g1	127	147	138	-22.80	-16.80	0.736842105263158	6.5	3-21,145-127	1-2,147-146[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUUUGGAAUUAAAGAUAGAAG&UAUUUAUUUUUAGUUCUAAGA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN59433_c0_g1_138_TPlot.pdf
TRINITY_DN59433_c0_g1:140	si_a21	TRINITY_DN59433_c0_g1	129	148	140	-24.30	-18.30	0.753086419753086	5	1-3,148-146;5-21,145-129	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	UUGGAAUUAAAGAUAGA-AGG&CCUAUUUAUUUUUAGUUCUAA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN59433_c0_g1_140_TPlot.pdf
TRINITY_DN5944_c0_g1:203	si_s526	TRINITY_DN5944_c0_g1	192	212	203	-25.60	-17.20	0.671875	9	5-20,208-193	1-4,212-209[UP5];21-21,192-192[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUCAAAAAUGAUUUUGUUAG&AAUUCGAAAUCAUUUUUGAUC	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN5944_c0_g1_203_TPlot.pdf
TRINITY_DN5944_c0_g1:2057	si_a667	TRINITY_DN5944_c0_g1	2044	2067	2057	-32.10	-21.20	0.660436137071651	8.5	1-7,2067-2061;8-11,2059-2056;13-16,2054-2051;17-21,2048-2044	x-x,2060-2060[BULt];12-12,2055-2055[SIL];x-x,2050-2049[BULt]	(((((..((((.((((.(((((((&)))))))-)))).))))--)))))	UGAAUUUGAGGUGUCAUGUAGGCA&UGCCUAU-UGAUUCCUU--AUUCA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN5944_c0_g1_2057_TPlot.pdf
TRINITY_DN5947_c0_g2:3250	si_s83	TRINITY_DN5947_c0_g2	3236	3259	3250	-30.90	-20.30	0.656957928802589	9.5	3-4,3257-3256;6-13,3254-3247;14-21,3243-3236	1-2,3259-3258[UP5];5-5,3255-3255[SIL];x-x,3246-3244[BULt]	((((((((...((((((((.((..&..)).))))))))---))))))))	GAAGGAGACUGAGAGAGGACAGCU&UUCUUUCCUUUCU---UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN5947_c0_g2_3250_TPlot.pdf
TRINITY_DN5948_c0_g1:1916	si_s802	TRINITY_DN5948_c0_g1	1905	1925	1916	-26.40	-17.50	0.662878787878788	5	1-12,1925-1914;14-17,1913-1910;18-21,1908-1905	13-13,x-x[BULq];x-x,1909-1909[BULt]	((((.((((-((((((((((((&)))))))))))).))))-))))	AAAGUGUAA-GAAGAUGAGGUA&UAUUUUAUCUUCGUUAC-CUUU	3	0.999999999733478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN5948_c0_g1_1916_TPlot.pdf
TRINITY_DN5948_c0_g1:228	si_s896	TRINITY_DN5948_c0_g1	217	243	228	-31.60	-21.00	0.664556962025316	13	2-5,242-239;6-9,237-234;10-21,228-217	1-1,243-243[UP5];x-x,238-238[BULt];x-x,233-229[BULt]	((((((((((((.....((((.((((.&.))))-))))-----))))))))))))	UGAAAUUGAAGAUUUACGAAAGGCCUU&UAGGC-UUUC-----UCUUCAAUUUCA	3	0.999984162787079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN5948_c0_g1_228_TPlot.pdf
TRINITY_DN5948_c0_g1:519	si_a410	TRINITY_DN5948_c0_g1	508	527	519	-17.80	-11.70	0.657303370786517	6	2-7,526-521;9-19,520-510	1-1,527-527[UP5];8-8,x-x[BULq];20-21,509-508[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	GAUAUUUAAAUGU-AACAAAC&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999482744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN5948_c0_g1_519_TPlot.pdf
TRINITY_DN5948_c0_g1:609	si_s76	TRINITY_DN5948_c0_g1	591	618	609	-23.60	-16.10	0.682203389830509	10	1-13,618-606;14-20,598-592	x-x,605-599[BULt];21-21,591-591[UP3]	.(((((((.......(((((((((((((&)))))))))))))-------))))))).	UAGAAAGGUUAACGAAAGGAGAAAAAAU&AUUUUUUUUCUUU-------CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5948_c0_g1_609_TPlot.pdf
TRINITY_DN5948_c0_g1:611	si_s74	TRINITY_DN5948_c0_g1	593	620	611	-25.00	-16.50	0.66	9.5	2-15,619-606;16-21,598-593	1-1,620-620[UP5];x-x,605-599[BULt]	((((((.......((((((((((((((.&.))))))))))))))-------))))))	GAAAGGUUAACGAAAGGAGAAAAAAUAA&CUAUUUUUUUUCUUU-------CCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5948_c0_g1_611_TPlot.pdf
TRINITY_DN59490_c0_g1:164	si_s68	TRINITY_DN59490_c0_g1	153	172	164	-23.10	-15.80	0.683982683982684	7	2-5,171-168;7-20,167-154	1-1,172-172[UP5];6-6,x-x[BULq];21-21,153-153[UP3]	.((((((((((((((-((((.&.)))).)))))))))))))).	CGAGAAGAAAGAUAG-GGUUC&CAACUUCUAUUUUUUUUCUUU	0	0.569151993443366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN59490_c0_g1_164_TPlot.pdf
TRINITY_DN5952_c0_g1:3314	si_a69	TRINITY_DN5952_c0_g1	3302	3323	3314	-24.00	-16.00	0.666666666666667	9.5	1-11,3323-3313;13-19,3310-3304	12-12,3312-3311[AILt];20-21,3303-3302[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	GCGAGGAAUUUAUUUGAGAGGA&UUCUUUCAAAU-UGUUUUUCAU	2	0.999999711865971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN5952_c0_g1_3314_TPlot.pdf
TRINITY_DN5952_c0_g1:3944	si_s92	TRINITY_DN5952_c0_g1	3925	3953	3944	-34.90	-23.42	0.671060171919771	14	1-14,3953-3940;17-21,3929-3925	15-16,3939-3930[AILt]	(((((..........((((((((((((((&))))))))))))))--------..)))))	GUCCGUCAUGGGAGUGCGGAGAGGAAGGG&UUCUUCUUCUUCGC--------UUCGGAU	2	0.99999965272465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN5952_c0_g1_3944_TPlot.pdf
TRINITY_DN5953_c0_g1:1496	si_s71	TRINITY_DN5953_c0_g1	1485	1504	1496	-25.70	-17.38	0.676264591439689	15	1-6,1504-1499;13-21,1493-1485	7-12,1498-1494[AILq]	(((((((((.....-((((((&))))))......)))))))))	GGGAGAGAAUCUUU-UGGAGG&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN5953_c0_g1_1496_TPlot.pdf
TRINITY_DN5953_c0_g1:1505	si_a777	TRINITY_DN5953_c0_g1	1494	1514	1505	-27.00	-21.20	0.785185185185185	9.5	2-16,1513-1499	1-1,1514-1514[UP5];17-21,1498-1494[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UCUUUUGGAGGGGUUGAGUCU&UGAUUCAACUCUUCUAUUUUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN5953_c0_g1_1505_TPlot.pdf
TRINITY_DN5953_c0_g1:1507	si_a775	TRINITY_DN5953_c0_g1	1496	1516	1507	-27.20	-21.20	0.779411764705882	11	4-18,1513-1499	1-3,1516-1514[UP5];19-21,1498-1496[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUUUGGAGGGGUUGAGUCUGC&AUUGAUUCAACUCUUCUAUUU	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN5953_c0_g1_1507_TPlot.pdf
TRINITY_DN5953_c0_g1:3118	si_a22	TRINITY_DN5953_c0_g1	3107	3126	3118	-23.50	-16.30	0.693617021276596	7.5	1-6,3126-3121;8-10,3120-3118;12-21,3116-3107	7-7,x-x[BULq];11-11,3117-3117[SIL]	((((((((((.(((-((((((&)))))).))).))))))))))	CUUGGAACUAUAGA-GAAUGG&CUAUUUAUUUUUAGUUCUAAG	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN5953_c0_g1_3118_TPlot.pdf
TRINITY_DN5953_c0_g1:3627	si_s800	TRINITY_DN5953_c0_g1	3616	3633	3627	-29.70	-20.70	0.696969696969697	11.5	1-3,3633-3631;7-20,3630-3617	4-6,x-x[BULq];21-21,3616-3616[UP3]	.((((((((((((((---(((&)))...)))))))))))))).	UGGUGGCGGAGAUGG---GCG&CGUAUUUUAUCUUCGUUACCU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN5953_c0_g1_3627_TPlot.pdf
TRINITY_DN5954_c0_g1:4017	si_a819	TRINITY_DN5954_c0_g1	4006	4026	4017	-28.90	-19.90	0.688581314878893	7	1-15,4026-4012	16-21,4011-4006[UP3]	......(((((((((((((((&)))))))))))))))......	CAUCACUUCCUUUUUUCUUCU&AGAAGAAGAAAGGAAAGAAAA	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN5954_c0_g1_4017_TPlot.pdf
TRINITY_DN59554_c0_g1:175	si_s77	TRINITY_DN59554_c0_g1	164	185	175	-25.50	-17.70	0.694117647058824	7.5	2-9,184-177;10-18,175-167;20-21,165-164	1-1,185-185[UP5];x-x,176-176[BULt];19-19,166-166[SIL]	((.(((((((((.((((((((.&.))))))))-))))))))).))	GAUGAGAGGAGAUGGAAAAAGU&UUUUUUUUC-UUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN59554_c0_g1_175_TPlot.pdf
TRINITY_DN5956_c0_g1:750	si_a547	TRINITY_DN5956_c0_g1	737	761	750	-26.90	-18.70	0.695167286245353	11	1-5,761-757;6-11,754-749;12-21,746-737	x-x,756-755[BULt];x-x,748-747[BULt]	((((((((((..((((((..(((((&)))))--))))))--))))))))))	AGAUGAAGGAAAAUGGAUACUGAGC&GUUCA--AUCUAU--UUCUUUAUCU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN5956_c0_g1_750_TPlot.pdf
TRINITY_DN5958_c0_g1:1950	si_a391	TRINITY_DN5958_c0_g1	1938	1959	1950	-22.80	-15.30	0.671052631578947	5	1-16,1959-1944;18-20,1941-1939	17-17,1943-1942[AILt];21-21,1938-1938[UP3]	.(((..((((((((((((((((&))))))))))))))))-.))).	UACAUUUUCUGUAUUUUUAAUU&AAUUAAGAAUAUAGAA-UUGUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN5958_c0_g1_1950_TPlot.pdf
TRINITY_DN5958_c0_g1:2043	si_a463	TRINITY_DN5958_c0_g1	2032	2052	2043	-19.70	-15.70	0.796954314720812	5	1-16,2052-2037	17-21,2036-2032[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAACGUACAUAUUAUAUAUAA&UUAUAUAUAAUAUGUAAUUAU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5958_c0_g1_2043_TPlot.pdf
TRINITY_DN5958_c0_g1:2045	si_a461	TRINITY_DN5958_c0_g1	2034	2054	2045	-21.50	-17.30	0.804651162790698	5	2-18,2053-2037	1-1,2054-2054[UP5];19-21,2036-2034[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACGUACAUAUUAUAUAUAAUG&UGUUAUAUAUAAUAUGUAAUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN5958_c0_g1_2045_TPlot.pdf
TRINITY_DN5958_c0_g1:2047	si_a459	TRINITY_DN5958_c0_g1	2036	2056	2047	-23.20	-18.30	0.788793103448276	4	2-20,2055-2037	1-1,2056-2056[UP5];21-21,2036-2036[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	GUACAUAUUAUAUAUAAUGAA&GUUGUUAUAUAUAAUAUGUAA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN5958_c0_g1_2047_TPlot.pdf
TRINITY_DN5958_c0_g1:2049	si_a457	TRINITY_DN5958_c0_g1	2038	2058	2049	-23.50	-16.70	0.71063829787234	7	4-21,2055-2038	1-3,2058-2056[UP5]	((((((((((((((((((...&...))))))))))))))))))	ACAUAUUAUAUAUAAUGAAUU&UUGUUGUUAUAUAUAAUAUGU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN5958_c0_g1_2049_TPlot.pdf
TRINITY_DN5958_c1_g1:2967	si_s39	TRINITY_DN5958_c1_g1	2956	2977	2967	-22.30	-14.60	0.654708520179372	9	2-9,2976-2969;10-17,2967-2960	1-1,2977-2977[UP5];x-x,2968-2968[BULt];18-21,2959-2956[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	UGUCCCAAUUAUAUAGGGAUUA&AAAUCUUUA-AUAAUUGGAUUU	4	0.999999423956054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN5958_c1_g1_2967_TPlot.pdf
TRINITY_DN5958_c1_g1:2972	si_s35	TRINITY_DN5958_c1_g1	2960	2981	2972	-24.00	-16.30	0.679166666666667	6	2-4,2980-2978;6-13,2976-2969;14-21,2967-2960	1-1,2981-2981[UP5];5-5,2977-2977[SIL];x-x,2968-2968[BULt]	((((((((.((((((((.(((.&.))).))))))))-))))))))	CCAAUUAUAUAGGGAUUAAGUG&AACUAAAUCUUUA-AUAAUUGG	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN5958_c1_g1_2972_TPlot.pdf
TRINITY_DN595_c0_g1:1054	si_a784	TRINITY_DN595_c0_g1	1044	1063	1054	-24.70	-16.40	0.663967611336032	7	2-10,1062-1054;14-20,1051-1045	1-1,1063-1063[UP5];11-13,1053-1052[AILq];21-21,1044-1044[UP3]	.(((((((..-(((((((((.&.)))))))))...))))))).	UAAAUAGAUC-AUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN595_c0_g1_1054_TPlot.pdf
TRINITY_DN595_c0_g1:1842	si_a55	TRINITY_DN595_c0_g1	1831	1851	1842	-38.90	-28.30	0.727506426735219	8.5	3-8,1849-1844;11-21,1841-1831	1-2,1851-1850[UP5];9-10,1843-1842[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GGAAGAAGCGAAGCGGCUCGC&AGGAGUCGACUCGCUUCUUUC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN595_c0_g1_1842_TPlot.pdf
TRINITY_DN595_c0_g1:294	si_a326	TRINITY_DN595_c0_g1	282	303	294	-26.20	-17.60	0.67175572519084	11	3-11,301-293;14-21,289-282	1-2,303-302[UP5];12-13,292-290[AILt]	((((((((...(((((((((..&..)))))))))-..))))))))	GACGAGGGCACAAAAGAGUCGA&AUGAUUUUUUU-AUUCCUUGUC	2	0.999987170517223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN595_c0_g1_294_TPlot.pdf
TRINITY_DN595_c0_g1:296	si_a636	TRINITY_DN595_c0_g1	285	305	296	-26.30	-17.70	0.673003802281369	8.5	2-14,304-292;16-17,290-289	1-1,305-305[UP5];15-15,291-291[SIL];18-21,288-285[UP3]	....((.(((((((((((((.&.))))))))))))).))....	GAGGGCACAAAAGAGUCGACG&UGUCGAUUUUUUUGAGUAAUA	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN595_c0_g1_296_TPlot.pdf
TRINITY_DN5960_c0_g1:11863	si_a874	TRINITY_DN5960_c0_g1	11852	11872	11863	-26.70	-18.80	0.704119850187266	7.5	3-7,11870-11866;9-19,11864-11854	1-2,11872-11871[UP5];8-8,11865-11865[SIL];20-21,11853-11852[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	UAUGAUUGUAACUUAAUCUAC&AAAGAUUUAGUUGCAAUCAAU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN5960_c0_g1_11863_TPlot.pdf
TRINITY_DN5960_c0_g1:3384	si_s315	TRINITY_DN5960_c0_g1	3370	3393	3384	-31.60	-21.20	0.670886075949367	16	4-10,3390-3384;11-19,3380-3372	1-3,3393-3391[UP5];x-x,3383-3381[BULt];20-21,3371-3370[UP3]	..(((((((((...(((((((...&...)))))))---)))))))))..	UCGUGACAGGAGUGGGGGCAGCGC&AUUCUGUCCU---UCUUGUUACAA	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN5960_c0_g1_3384_TPlot.pdf
TRINITY_DN5960_c1_g1:258	si_s888	TRINITY_DN5960_c1_g1	247	267	258	-26.80	-18.10	0.675373134328358	18.5	9-19,259-249	1-8,267-260[UP5];20-21,248-247[UP3]	..(((((((((((........&........)))))))))))..	CCGAGAGAGCCUGGGUCGUCA&AAAAUAAAUAGGCUUUCUCUU	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN5960_c1_g1_258_TPlot.pdf
TRINITY_DN5960_c1_g1:259	si_s887	TRINITY_DN5960_c1_g1	248	268	259	-26.80	-18.10	0.675373134328358	19.5	10-20,259-249	1-9,268-260[UP5];21-21,248-248[UP3]	.(((((((((((.........&.........))))))))))).	CGAGAGAGCCUGGGUCGUCAA&AAAAAUAAAUAGGCUUUCUCU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN5960_c1_g1_259_TPlot.pdf
TRINITY_DN5962_c0_g2:1921	si_a784	TRINITY_DN5962_c0_g2	1908	1930	1921	-24.70	-19.90	0.805668016194332	5	1-13,1930-1918;14-20,1915-1909	x-x,1917-1916[BULt];21-21,1908-1908[UP3]	.(((((((..(((((((((((((&)))))))))))))--))))))).	UAAAUGGAAUGAAAUAGAGGAGU&ACUCUUCUAUUUU--UCUAUUUU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5962_c0_g2_1921_TPlot.pdf
TRINITY_DN5962_c0_g2:1922	si_a783	TRINITY_DN5962_c0_g2	1909	1931	1922	-24.70	-21.10	0.854251012145749	4	1-14,1931-1918;15-21,1915-1909	x-x,1917-1916[BULt]	(((((((..((((((((((((((&))))))))))))))--)))))))	AAAUGGAAUGAAAUAGAGGAGUU&AACUCUUCUAUUUU--UCUAUUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5962_c0_g2_1922_TPlot.pdf
TRINITY_DN5962_c0_g2:2626	si_s89	TRINITY_DN5962_c0_g2	2611	2636	2626	-35.30	-23.20	0.657223796033994	11.5	1-6,2636-2631;8-13,2628-2623;14-21,2618-2611	7-7,2630-2629[AILt];x-x,2622-2619[BULt]	((((((((....((((((..((((((&))))))-.))))))----))))))))	CGAGGUGGACCAAGAGGAUCGAGAGG&CCUUUC-UUCUUCU----UCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN5962_c0_g2_2626_TPlot.pdf
TRINITY_DN5962_c0_g2:2853	si_a404	TRINITY_DN5962_c0_g2	2843	2862	2853	-21.70	-14.80	0.682027649769585	5	1-13,2862-2850;15-19,2849-2845	14-14,x-x[BULq];20-21,2844-2843[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AUAAUAU-AACAAAAUAGUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999996651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN5962_c0_g2_2853_TPlot.pdf
TRINITY_DN5962_c0_g2:46	si_s68	TRINITY_DN5962_c0_g2	33	55	46	-23.10	-17.50	0.757575757575758	6.5	2-16,54-40;17-21,37-33	1-1,55-55[UP5];x-x,39-38[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GAAGAAGGAAGAAGUGGAAGUUC&CAACUUCUAUUUUUUU--UCUUU	4	0.999607940298996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN5962_c0_g2_46_TPlot.pdf
TRINITY_DN5963_c0_g1:2641	si_a326	TRINITY_DN5963_c0_g1	2631	2650	2641	-26.20	-17.70	0.675572519083969	6.5	1-11,2650-2640;13-17,2638-2634;19-21,2633-2631	12-12,2639-2639[SIL];18-18,x-x[BULq]	(((-(((((.(((((((((((&))))))))))).))))).)))	GAC-AGGAGCAGGAAAAUCGU&AUGAUUUUUUUAUUCCUUGUC	4	0.999999966633967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN5963_c0_g1_2641_TPlot.pdf
TRINITY_DN5964_c0_g1:1094	si_a639	TRINITY_DN5964_c0_g1	1083	1103	1094	-23.60	-15.50	0.656779661016949	8	2-3,1102-1101;5-19,1099-1085	1-1,1103-1103[UP5];4-4,1100-1100[SIL];20-21,1084-1083[UP3]	..(((((((((((((((.((.&.)).)))))))))))))))..	UAAUGUUAUUCAGGAAAUUCA&CGAUUUUUUUGAGUAAUAUAU	3	0.999999994774509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN5964_c0_g1_1094_TPlot.pdf
TRINITY_DN5964_c0_g1:1557	si_a874	TRINITY_DN5964_c0_g1	1546	1566	1557	-26.70	-17.40	0.651685393258427	8	1-5,1566-1562;8-15,1559-1552;17-19,1550-1548	6-7,1561-1560[SIL];16-16,1551-1551[SIL];20-21,1547-1546[UP3]	..(((.((((((((..(((((&)))))..)))))))).)))..	GCUGAGUGCAACUGCUUCUUU&AAAGAUUUAGUUGCAAUCAAU	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN5964_c0_g1_1557_TPlot.pdf
TRINITY_DN5964_c0_g1:1558	si_a873	TRINITY_DN5964_c0_g1	1547	1567	1558	-27.00	-18.20	0.674074074074074	7.5	1-6,1567-1562;9-16,1559-1552;18-20,1550-1548	7-8,1561-1560[SIL];17-17,1551-1551[SIL];21-21,1547-1547[UP3]	.(((.((((((((..((((((&))))))..)))))))).))).	CUGAGUGCAACUGCUUCUUUG&UAAAGAUUUAGUUGCAAUCAA	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN5964_c0_g1_1558_TPlot.pdf
TRINITY_DN5964_c0_g1:1559	si_a872	TRINITY_DN5964_c0_g1	1548	1568	1559	-27.00	-18.40	0.681481481481481	7.5	1-7,1568-1562;10-17,1559-1552;19-21,1550-1548	8-9,1561-1560[SIL];18-18,1551-1551[SIL]	(((.((((((((..(((((((&)))))))..)))))))).)))	UGAGUGCAACUGCUUCUUUGG&UUAAAGAUUUAGUUGCAAUCA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN5964_c0_g1_1559_TPlot.pdf
TRINITY_DN5964_c0_g1:1569	si_s834	TRINITY_DN5964_c0_g1	1558	1578	1569	-26.70	-18.40	0.689138576779026	13.5	6-11,1573-1568;13-21,1566-1558	1-5,1578-1574[UP5];12-12,1567-1567[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	UGCUUCUUUGGGAUUGGUGUU&AAAAACAAUUUGAAAGAAGCG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s834_TRINITY_DN5964_c0_g1_1569_TPlot.pdf
TRINITY_DN5964_c0_g1:1581	si_s422	TRINITY_DN5964_c0_g1	1569	1590	1581	-21.30	-14.40	0.676056338028169	7	1-10,1590-1581;11-15,1579-1575;17-21,1573-1569	x-x,1580-1580[BULt];16-16,1574-1574[SIL]	(((((.(((((.((((((((((&))))))))))-))))).)))))	GAUUGGUGUUAUUAUGGGAUGU&AUAUUCUAUA-UAACAAUAAUU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN5964_c0_g1_1581_TPlot.pdf
TRINITY_DN5964_c0_g1:1810	si_a402	TRINITY_DN5964_c0_g1	1790	1819	1810	-22.40	-14.60	0.651785714285714	23.5	1-12,1819-1808;13-20,1798-1791	x-x,1807-1799[BULt];21-21,1790-1790[UP3]	.((((((((.........((((((((((((&))))))))))))---------)))))))).	UAUGUAGGCUCCAACAGGGAAGCAGUUCUA&UAGAAUUGUUUU---------GUUUAUAUU	2	0.999999994286174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5964_c0_g1_1810_TPlot.pdf
TRINITY_DN5969_c0_g1:2681	si_a471	TRINITY_DN5969_c0_g1	2667	2690	2681	-21.10	-14.20	0.672985781990521	7	1-13,2690-2678;14-18,2674-2670	x-x,2677-2675[BULt];19-21,2669-2667[UP3]	...(((((...(((((((((((((&)))))))))))))---)))))...	UUUUAACAUAUAUGAUUACAUAUU&AAUAUGUAAUUAU---UGUUAUAU	4	0.99999881361456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN5969_c0_g1_2681_TPlot.pdf
TRINITY_DN5969_c0_g1:2683	si_a469	TRINITY_DN5969_c0_g1	2669	2692	2683	-21.10	-15.50	0.734597156398104	5.5	2-15,2691-2678;16-20,2674-2670	1-1,2692-2692[UP5];x-x,2677-2675[BULt];21-21,2669-2669[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	UUAACAUAUAUGAUUACAUAUUAG&AUAAUAUGUAAUUAU---UGUUAU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN5969_c0_g1_2683_TPlot.pdf
TRINITY_DN5969_c0_g1:2688	si_a464	TRINITY_DN5969_c0_g1	2677	2697	2688	-19.60	-12.90	0.658163265306122	12.5	7-20,2691-2678	1-6,2697-2692[UP5];21-21,2677-2677[UP3]	.((((((((((((((......&......)))))))))))))).	UAUGAUUACAUAUUAGAUUGC&UAUAUAUAAUAUGUAAUUAUU	3	0.999945552445062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN5969_c0_g1_2688_TPlot.pdf
TRINITY_DN5969_c0_g1:2689	si_a463	TRINITY_DN5969_c0_g1	2678	2698	2689	-19.70	-12.90	0.654822335025381	13.5	8-21,2691-2678	1-7,2698-2692[UP5]	((((((((((((((.......&.......))))))))))))))	AUGAUUACAUAUUAGAUUGCU&UUAUAUAUAAUAUGUAAUUAU	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN5969_c0_g1_2689_TPlot.pdf
TRINITY_DN5969_c0_g1:408	si_s442	TRINITY_DN5969_c0_g1	397	417	408	-23.80	-16.00	0.672268907563025	6.5	1-10,417-408;12-14,407-405;15-21,403-397	11-11,x-x[BULq];x-x,404-404[BULt]	(((((((.(((-((((((((((&)))))))))).)))-)))))))	UGUUGUUCGUA-GUAGUGUGUA&UACAUAUUAUAUAU-AACAACA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN5969_c0_g1_408_TPlot.pdf
TRINITY_DN596_c0_g1:2372	si_a451	TRINITY_DN596_c0_g1	2361	2381	2372	-23.60	-16.90	0.716101694915254	8.5	1-17,2381-2365	18-21,2364-2361[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUAUUAUGACGAUGGUUAUCU&AGAUAAUUGUUGUUAUAUAUA	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN596_c0_g1_2372_TPlot.pdf
TRINITY_DN596_c0_g1:2377	si_a446	TRINITY_DN596_c0_g1	2366	2386	2377	-25.50	-18.40	0.72156862745098	6	2-4,2385-2383;6-21,2381-2366	1-1,2386-2386[UP5];5-5,2382-2382[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AUGACGAUGGUUAUCUGAUAA&AUAUGAGAUAAUUGUUGUUAU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN596_c0_g1_2377_TPlot.pdf
TRINITY_DN5971_c0_g1:1199	si_a497	TRINITY_DN5971_c0_g1	1187	1208	1199	-32.00	-23.80	0.74375	5	1-14,1208-1195;16-20,1192-1188	15-15,1194-1193[AILt];21-21,1187-1187[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	UAGGAAAAACGGAAGACGACAU&AUGUCGUUUUUCGU-CUUCCUU	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5971_c0_g1_1199_TPlot.pdf
TRINITY_DN5971_c0_g1:1203	si_a493	TRINITY_DN5971_c0_g1	1192	1212	1203	-29.50	-21.70	0.735593220338983	7.5	3-18,1210-1195	1-2,1212-1211[UP5];19-21,1194-1192[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAACGGAAGACGACAUAUGU&GAAUAUGUCGUUUUUCGUCUU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN5971_c0_g1_1203_TPlot.pdf
TRINITY_DN5971_c0_g1:1208	si_a488	TRINITY_DN5971_c0_g1	1197	1216	1208	-26.40	-19.90	0.753787878787879	6	1-5,1216-1212;8-21,1210-1197	6-7,1211-1211[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	GGAAGACGACAUAUG-UAUGU&AUAUAGAAUAUGUCGUUUUUC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN5971_c0_g1_1208_TPlot.pdf
TRINITY_DN5971_c0_g1:1628	si_a792	TRINITY_DN5971_c0_g1	1615	1637	1628	-27.60	-18.10	0.655797101449275	7	2-16,1636-1622;17-19,1619-1617	1-1,1637-1637[UP5];x-x,1621-1620[BULt];20-21,1616-1615[UP3]	..(((..(((((((((((((((.&.)))))))))))))))--)))..	AAGAUGAUGGAAAAUAGAGAGAG&AUUUUUCUAUUUUCCA--AUCCG	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN5971_c0_g1_1628_TPlot.pdf
TRINITY_DN5971_c0_g1:1631	si_a789	TRINITY_DN5971_c0_g1	1620	1642	1631	-24.80	-18.20	0.733870967741935	10	2-4,1641-1639;5-19,1636-1622	1-1,1642-1642[UP5];x-x,1638-1637[BULt];20-21,1621-1620[UP3]	..(((((((((((((((..(((.&.)))--)))))))))))))))..	GAUGGAAAAUAGAGAGAGCUGGG&UCUA--UUUUUCUAUUUUCCAAU	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN5971_c0_g1_1631_TPlot.pdf
TRINITY_DN5971_c0_g1:1633	si_a787	TRINITY_DN5971_c0_g1	1622	1644	1633	-26.30	-22.50	0.855513307984791	8	1-6,1644-1639;7-21,1636-1622	x-x,1638-1637[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	UGGAAAAUAGAGAGAGCUGGGAG&CUUCUA--UUUUUCUAUUUUCCA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN5971_c0_g1_1633_TPlot.pdf
TRINITY_DN5971_c0_g1:1634	si_a786	TRINITY_DN5971_c0_g1	1623	1645	1634	-26.60	-22.70	0.853383458646616	8	1-7,1645-1639;8-21,1636-1623	x-x,1638-1637[BULt]	((((((((((((((..(((((((&)))))))--))))))))))))))	GGAAAAUAGAGAGAGCUGGGAGA&UCUUCUA--UUUUUCUAUUUUCC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5971_c0_g1_1634_TPlot.pdf
TRINITY_DN5971_c0_g1:1640	si_a782	TRINITY_DN5971_c0_g1	1627	1649	1640	-26.40	-17.50	0.662878787878788	12	4-11,1646-1639;12-21,1636-1627	1-3,1649-1647[UP5];x-x,1638-1637[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	AAUAGAGAGAGCUGGGAGAGAAU&CAACUCUUCUA--UUUUUCUAUU	2	0.999990717359949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN5971_c0_g1_1640_TPlot.pdf
TRINITY_DN5971_c0_g1:2090	si_a497	TRINITY_DN5971_c0_g1	2078	2099	2090	-32.00	-23.80	0.74375	5	1-14,2099-2086;16-20,2083-2079	15-15,2085-2084[AILt];21-21,2078-2078[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	UAGGAAAAACGGAAGACGACAU&AUGUCGUUUUUCGU-CUUCCUU	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN5971_c0_g1_2090_TPlot.pdf
TRINITY_DN5971_c0_g1:2094	si_a493	TRINITY_DN5971_c0_g1	2083	2103	2094	-29.50	-21.70	0.735593220338983	7.5	3-18,2101-2086	1-2,2103-2102[UP5];19-21,2085-2083[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAACGGAAGACGACAUAUGU&GAAUAUGUCGUUUUUCGUCUU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN5971_c0_g1_2094_TPlot.pdf
TRINITY_DN5971_c0_g1:2106	si_a457	TRINITY_DN5971_c0_g1	2096	2117	2106	-23.50	-15.50	0.659574468085106	9.5	1-7,2117-2111;8-15,2108-2101;17-21,2100-2096	x-x,2110-2109[BULt];16-16,x-x[BULq]	(((((-((((((((..(((((((&)))))))--)))))))).)))))	ACAUA-UGUAUGUACUGCAGCGA&UUGUUGU--UAUAUAUAAUAUGU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN5971_c0_g1_2106_TPlot.pdf
TRINITY_DN5972_c0_g1:1029	si_a363	TRINITY_DN5972_c0_g1	1018	1038	1029	-26.40	-17.40	0.659090909090909	12	3-15,1036-1024	1-2,1038-1037[UP5];16-21,1023-1018[UP3]	......(((((((((((((..&..)))))))))))))......	UCUAAGGAUCCGAUUAGGAGC&UAUUUUGAUCGGAUCAAAAAU	3	0.999463646079035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN5972_c0_g1_1029_TPlot.pdf
TRINITY_DN5972_c0_g1:1251	si_s76	TRINITY_DN5972_c0_g1	1235	1260	1251	-23.60	-15.50	0.656779661016949	10.5	3-14,1258-1247;15-21,1241-1235	1-2,1260-1259[UP5];x-x,1246-1242[BULt]	(((((((.....((((((((((((..&..))))))))))))-----)))))))	AAGGAAGCAGAAGAAAGAGAGAAAUU&AUUUUUUUUCUUUC-----CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5972_c0_g1_1251_TPlot.pdf
TRINITY_DN5973_c8_g1:57	si_a351	TRINITY_DN5973_c8_g1	46	66	57	-20.50	-15.10	0.736585365853659	12	4-19,63-48	1-3,66-64[UP5];20-21,47-46[UP3]	..((((((((((((((((...&...))))))))))))))))..	UGCAGAAUGGGAUUGGUGGCU&AAAUAUUAAUUCUAUUUUGAU	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN5973_c8_g1_57_TPlot.pdf
TRINITY_DN5973_c8_g1:58	si_a350	TRINITY_DN5973_c8_g1	47	67	58	-20.30	-15.10	0.74384236453202	13	5-20,63-48	1-4,67-64[UP5];21-21,47-47[UP3]	.((((((((((((((((....&....)))))))))))))))).	GCAGAAUGGGAUUGGUGGCUG&AAAAUAUUAAUUCUAUUUUGA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN5973_c8_g1_58_TPlot.pdf
TRINITY_DN5974_c0_g1:1236	si_a319	TRINITY_DN5974_c0_g1	1225	1246	1236	-22.40	-15.20	0.678571428571429	8	1-4,1246-1243;5-17,1241-1229	x-x,1242-1242[BULt];18-21,1228-1225[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	UAUUAAAGGAUCAUGGAGUAGA&UUUA-UCCAUGAUUUUUUUAUU	4	0.999999999995242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN5974_c0_g1_1236_TPlot.pdf
TRINITY_DN5974_c0_g1:1237	si_a318	TRINITY_DN5974_c0_g1	1226	1247	1237	-22.50	-16.50	0.733333333333333	7	1-5,1247-1243;6-18,1241-1229	x-x,1242-1242[BULt];19-21,1228-1226[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	AUUAAAGGAUCAUGGAGUAGAU&AUUUA-UCCAUGAUUUUUUUAU	2	0.995319218271231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN5974_c0_g1_1237_TPlot.pdf
TRINITY_DN5979_c0_g1:1195	si_a457	TRINITY_DN5979_c0_g1	1184	1204	1195	-23.50	-16.80	0.714893617021277	5.5	1-11,1204-1194;13-16,1192-1189;18-21,1187-1184	12-12,1193-1193[SIL];17-17,1188-1188[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	ACAUUUUGUUUGUAACAGCAA&UUGUUGUUAUAUAUAAUAUGU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN5979_c0_g1_1195_TPlot.pdf
TRINITY_DN5979_c0_g1:1196	si_a456	TRINITY_DN5979_c0_g1	1185	1205	1196	-22.80	-16.90	0.741228070175438	4.5	1-12,1205-1194;14-17,1192-1189;19-21,1187-1185	13-13,1193-1193[SIL];18-18,1188-1188[SIL]	(((.((((.((((((((((((&)))))))))))).)))).)))	CAUUUUGUUUGUAACAGCAAU&AUUGUUGUUAUAUAUAAUAUG	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN5979_c0_g1_1196_TPlot.pdf
TRINITY_DN5979_c0_g1:3772	si_a404	TRINITY_DN5979_c0_g1	3761	3781	3772	-21.70	-16.20	0.746543778801843	7.5	1-16,3781-3766	17-21,3765-3761[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUCGAUAAACGAAACAGUUU&GAAUUGUUUUGUUUAUAUUUA	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN5979_c0_g1_3772_TPlot.pdf
TRINITY_DN5979_c0_g1:3774	si_a402	TRINITY_DN5979_c0_g1	3763	3783	3774	-22.40	-16.40	0.732142857142857	9	3-18,3781-3766	1-2,3783-3782[UP5];19-21,3765-3763[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCGAUAAACGAAACAGUUUAA&UAGAAUUGUUUUGUUUAUAUU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN5979_c0_g1_3774_TPlot.pdf
TRINITY_DN5979_c0_g1:3778	si_a398	TRINITY_DN5979_c0_g1	3767	3787	3778	-22.40	-15.10	0.674107142857143	7.5	3-5,3785-3783;7-21,3781-3767	1-2,3787-3786[UP5];6-6,3782-3782[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UAAACGAAACAGUUUAAUAAA&AAUAUAGAAUUGUUUUGUUUA	4	0.999999956363713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN5979_c0_g1_3778_TPlot.pdf
TRINITY_DN59806_c0_g1:159	si_s7	TRINITY_DN59806_c0_g1	148	170	159	-21.70	-14.30	0.658986175115207	12	1-8,170-163;9-18,160-151	x-x,162-161[BULt];19-21,150-148[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	GUUUAGUGGUGGUGCGAGUAGUA&UAUUACUU--AUUAUUACUAUAU	3	0.999997865526154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN59806_c0_g1_159_TPlot.pdf
TRINITY_DN5984_c0_g1:438	si_s75	TRINITY_DN5984_c0_g1	424	447	438	-24.00	-16.60	0.691666666666667	7	1-6,447-442;8-13,440-435;14-21,431-424	7-7,441-441[SIL];x-x,434-432[BULt]	((((((((...((((((.((((((&)))))).))))))---))))))))	AGAAGGGAAAAAAGAAAUGAAAUG&UAUUUUUUUUCUU---UCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN5984_c0_g1_438_TPlot.pdf
TRINITY_DN5984_c0_g1:439	si_s74	TRINITY_DN5984_c0_g1	425	448	439	-25.00	-18.40	0.736	7.5	1-7,448-442;9-14,440-435;15-21,431-425	8-8,441-441[SIL];x-x,434-432[BULt]	(((((((...((((((.(((((((&))))))).))))))---)))))))	GAAGGGAAAAAAGAAAUGAAAUGG&CUAUUUUUUUUCUU---UCCUUUC	3	0.999999946397659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN5984_c0_g1_439_TPlot.pdf
TRINITY_DN59858_c0_g1:1807	si_a320	TRINITY_DN59858_c0_g1	1796	1816	1807	-24.40	-16.20	0.663934426229508	9.5	2-14,1815-1803	1-1,1816-1816[UP5];15-21,1802-1796[UP3]	.......(((((((((((((.&.))))))))))))).......	UGCAACUGAAGUCAUGGAUAU&UUAUCCAUGAUUUUUUUAUUC	4	0.999999967315661	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN59858_c0_g1_1807_TPlot.pdf
TRINITY_DN5985_c0_g1:681	si_s680	TRINITY_DN5985_c0_g1	670	689	681	-25.10	-17.10	0.681274900398406	7	2-7,688-683;9-18,682-673	1-1,689-689[UP5];8-8,x-x[BULq];19-21,672-670[UP3]	...((((((((((-((((((.&.)))))).))))))))))...	UAGUAGGCUCAUG-UUCUAUU&UAUAGAAACAUGAGUUUAAUU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN5985_c0_g1_681_TPlot.pdf
TRINITY_DN59862_c0_g1:473	si_s94	TRINITY_DN59862_c0_g1	462	482	473	-35.50	-24.60	0.692957746478873	9	1-6,482-477;8-17,475-466	7-7,476-476[SIL];18-21,465-462[UP3]	....((((((((((.((((((&)))))).))))))))))....	CUCCCCGAAGCGAGAGAGAGG&CUUCUUCUUCGCUUCGGAUUG	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN59862_c0_g1_473_TPlot.pdf
TRINITY_DN59862_c0_g1:476	si_s91	TRINITY_DN59862_c0_g1	465	485	476	-34.70	-24.60	0.708933717579251	11	4-9,482-477;11-20,475-466	1-3,485-483[UP5];10-10,476-476[SIL];21-21,465-465[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	CCCGAAGCGAGAGAGAGGUGU&UUUCUUCUUCUUCGCUUCGGA	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN59862_c0_g1_476_TPlot.pdf
TRINITY_DN59862_c0_g1:477	si_s90	TRINITY_DN59862_c0_g1	466	489	477	-35.30	-24.20	0.685552407932011	12	1-4,489-486;5-10,482-477;12-21,475-466	x-x,485-483[BULt];11-11,476-476[SIL]	((((((((((.((((((...((((&))))---)))))).))))))))))	CCGAAGCGAGAGAGAGGUGUGAAG&CUUU---CUUCUUCUUCGCUUCGG	4	0.999999998980839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN59862_c0_g1_477_TPlot.pdf
TRINITY_DN59862_c0_g1:537	si_a584	TRINITY_DN59862_c0_g1	526	546	537	-31.50	-21.16	0.671746031746032	10.5	1-6,546-541;11-20,536-527	7-10,540-537[SIL];21-21,526-526[UP3]	.((((((((((....((((((&))))))....)))))))))).	GUCUGUCCUUCAUCGUGCAAG&UUUGUAACAAGAAGGACAGAA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a584_TRINITY_DN59862_c0_g1_537_TPlot.pdf
TRINITY_DN59862_c0_g1:539	si_a582	TRINITY_DN59862_c0_g1	528	548	539	-32.80	-22.16	0.675609756097561	11	2-8,547-541;13-21,536-528	1-1,548-548[UP5];9-12,540-537[SIL]	(((((((((....(((((((.&.)))))))....)))))))))	CUGUCCUUCAUCGUGCAAGCC&UGUUUGUAACAAGAAGGACAG	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN59862_c0_g1_539_TPlot.pdf
TRINITY_DN59862_c0_g1:580	si_s92	TRINITY_DN59862_c0_g1	566	589	580	-34.90	-23.60	0.67621776504298	11.5	1-11,589-579;12-19,575-568	x-x,578-576[BULt];20-21,567-566[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	CGUCGGGGCGUACGAGAAGGAGAA&UUCUUCUUCUU---CGCUUCGGAU	4	0.999999999827311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN59862_c0_g1_580_TPlot.pdf
TRINITY_DN59862_c0_g1:581	si_s91	TRINITY_DN59862_c0_g1	567	590	581	-34.70	-24.50	0.706051873198847	10.5	1-12,590-579;13-20,575-568	x-x,578-576[BULt];21-21,567-567[UP3]	.((((((((...((((((((((((&))))))))))))---)))))))).	GUCGGGGCGUACGAGAAGGAGAAA&UUUCUUCUUCUU---CGCUUCGGA	2	0.999149267263628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN59862_c0_g1_581_TPlot.pdf
TRINITY_DN59862_c0_g1:582	si_s90	TRINITY_DN59862_c0_g1	568	591	582	-35.30	-27.20	0.770538243626062	6	1-13,591-579;14-21,575-568	x-x,578-576[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	UCGGGGCGUACGAGAAGGAGAAAG&CUUUCUUCUUCUU---CGCUUCGG	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN59862_c0_g1_582_TPlot.pdf
TRINITY_DN59862_c0_g1:583	si_s89	TRINITY_DN59862_c0_g1	569	592	583	-35.30	-26.50	0.75070821529745	6.5	2-14,591-579;15-21,575-569	1-1,592-592[UP5];x-x,578-576[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	CGGGGCGUACGAGAAGGAGAAAGA&CCUUUCUUCUUCUU---CGCUUCG	2	0.946990870446739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN59862_c0_g1_583_TPlot.pdf
TRINITY_DN59862_c0_g1:586	si_s86	TRINITY_DN59862_c0_g1	572	595	586	-32.90	-21.80	0.662613981762918	12	5-17,591-579;18-21,575-572	1-4,595-592[UP5];x-x,578-576[BULt]	((((...(((((((((((((....&....)))))))))))))---))))	GGCGUACGAGAAGGAGAAAGAGGC&UUUCCUUUCUUCUUCUU---CGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN59862_c0_g1_586_TPlot.pdf
TRINITY_DN59864_c0_g1:3325	si_s634	TRINITY_DN59864_c0_g1	3309	3334	3325	-38.30	-28.60	0.746736292428199	13	2-10,3333-3325;11-11,3323-3323;12-21,3318-3309	1-1,3334-3334[UP5];x-x,3324-3324[BULt];x-x,3322-3319[BULt]	((((((((((....(.(((((((((.&.)))))))))-)----))))))))))	GAGGGCGGACUGCGGACCUGCGAAAC&UUUUCGUAGG-C----GUUUGCCCUC	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN59864_c0_g1_3325_TPlot.pdf
TRINITY_DN59864_c0_g1:5162	si_s376	TRINITY_DN59864_c0_g1	5152	5172	5162	-42.50	-29.40	0.691764705882353	7	1-8,5172-5165;9-14,5163-5158;16-18,5157-5155	x-x,5164-5164[BULt];15-15,x-x[BULq];19-21,5154-5152[UP3]	...(((-((((((.((((((((&))))))))-)))))).)))...	CGCGGC-GACACGACGAGCGGU&AUCGCUCG-CGUGUCCGCCUUA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN59864_c0_g1_5162_TPlot.pdf
TRINITY_DN59864_c0_g1:5328	si_s796	TRINITY_DN59864_c0_g1	5312	5337	5328	-30.30	-20.00	0.66006600660066	16	1-10,5337-5328;11-18,5322-5315	x-x,5327-5323[BULt];19-21,5314-5312[UP3]	...((((((((.....((((((((((&))))))))))-----))))))))...	CAAGAAGAUGAUAAAAGAUAUGAGCU&AGCUCGUAUU-----UUAUCUUCGUU	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN59864_c0_g1_5328_TPlot.pdf
TRINITY_DN59870_c0_g1:780	si_a339	TRINITY_DN59870_c0_g1	769	789	780	-31.10	-23.60	0.758842443729904	7	1-18,789-772	19-21,771-769[UP3]	...((((((((((((((((((&))))))))))))))))))...	UACAUAUUUUUGGGAUGGGGA&UCCUUGUCCCGAAAAUAUUAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a339_TRINITY_DN59870_c0_g1_780_TPlot.pdf
TRINITY_DN59870_c0_g1:782	si_a337	TRINITY_DN59870_c0_g1	771	791	782	-30.80	-23.80	0.772727272727273	7.5	3-20,789-772	1-2,791-790[UP5];21-21,771-771[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAUAUUUUUGGGAUGGGGAGA&AUUCCUUGUCCCGAAAAUAUU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN59870_c0_g1_782_TPlot.pdf
TRINITY_DN59870_c0_g1:783	si_a336	TRINITY_DN59870_c0_g1	772	792	783	-31.20	-23.80	0.762820512820513	8.5	4-21,789-772	1-3,792-790[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUAUUUUUGGGAUGGGGAGAA&UAUUCCUUGUCCCGAAAAUAU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN59870_c0_g1_783_TPlot.pdf
TRINITY_DN59870_c0_g1:784	si_a335	TRINITY_DN59870_c0_g1	773	793	784	-31.10	-22.70	0.729903536977492	10.5	5-21,789-773	1-4,793-790[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAUUUUUGGGAUGGGGAGAAU&UUAUUCCUUGUCCCGAAAAUA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN59870_c0_g1_784_TPlot.pdf
TRINITY_DN59870_c0_g1:785	si_a334	TRINITY_DN59870_c0_g1	774	794	785	-30.70	-21.30	0.693811074918567	12.5	6-21,789-774	1-5,794-790[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUUUUGGGAUGGGGAGAAUU&UUUAUUCCUUGUCCCGAAAAU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN59870_c0_g1_785_TPlot.pdf
TRINITY_DN59873_c0_g1:161	si_a457	TRINITY_DN59873_c0_g1	148	170	161	-23.50	-15.30	0.651063829787234	11	2-2,169-169;4-11,167-160;12-21,157-148	1-1,170-170[UP5];3-3,168-168[SIL];x-x,159-158[BULt]	((((((((((..((((((((.(.&.).))))))))--))))))))))	ACAUGUUGUAAUUGUGACAGGAU&UUGUUGUUAUA--UAUAAUAUGU	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN59873_c0_g1_161_TPlot.pdf
TRINITY_DN59880_c0_g1:1862	si_a120	TRINITY_DN59880_c0_g1	1851	1872	1862	-30.50	-21.30	0.698360655737705	10	1-4,1872-1869;5-16,1867-1856	x-x,1868-1868[BULt];17-21,1855-1851[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	GAUGGGCUAUAAGGCAGCGCUC&GAGC-UUGUUUUAUAGCAAUAG	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN59880_c0_g1_1862_TPlot.pdf
TRINITY_DN59880_c0_g1:1865	si_a117	TRINITY_DN59880_c0_g1	1854	1875	1865	-31.00	-21.40	0.690322580645161	12	4-7,1872-1869;8-19,1867-1856	1-3,1875-1873[UP5];x-x,1868-1868[BULt];20-21,1855-1854[UP3]	..((((((((((((.((((...&...))))-))))))))))))..	GGGCUAUAAGGCAGCGCUCACU&UACGAGC-UUGUUUUAUAGCAA	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN59880_c0_g1_1865_TPlot.pdf
TRINITY_DN59888_c0_g1:1533	si_a437	TRINITY_DN59888_c0_g1	1522	1542	1533	-31.90	-21.40	0.670846394984326	9.5	2-14,1541-1529	1-1,1542-1542[UP5];15-21,1528-1522[UP3]	.......(((((((((((((.&.))))))))))))).......	AUGGAAGCGUAUCCGACGGAG&AUCCGUUGGAUAUGAGAUAAU	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a437_TRINITY_DN59888_c0_g1_1533_TPlot.pdf
TRINITY_DN59888_c0_g1:2136	si_s383	TRINITY_DN59888_c0_g1	2123	2145	2136	-40.90	-28.66	0.700733496332518	11	1-4,2145-2142;6-11,2140-2135;15-20,2129-2124	5-5,2141-2141[SIL];12-14,2134-2130[AILt];21-21,2123-2123[UP3]	.((((((.....((((((.((((&)))).))))))--...)))))).	AGGAAUGACACCGGCGGAGACGC&GCGUGUCCGCC--UUACAUUCCA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s383_TRINITY_DN59888_c0_g1_2136_TPlot.pdf
TRINITY_DN59888_c0_g1:990	si_a637	TRINITY_DN59888_c0_g1	979	999	990	-25.80	-17.80	0.689922480620155	10	1-16,999-984	17-21,983-979[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUGGCGCUUAAGAAAGUUGGC&GUCGAUUUUUUUGAGUAAUAU	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN59888_c0_g1_990_TPlot.pdf
TRINITY_DN59888_c0_g1:995	si_a632	TRINITY_DN59888_c0_g1	984	1004	995	-26.10	-17.70	0.67816091954023	13.5	6-21,999-984	1-5,1004-1000[UP5]	((((((((((((((((.....&.....))))))))))))))))	GCUUAAGAAAGUUGGCGCUCA&AUUAUGUCGAUUUUUUUGAGU	3	0.999998905636671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN59888_c0_g1_995_TPlot.pdf
TRINITY_DN59911_c0_g1:355	si_a319	TRINITY_DN59911_c0_g1	344	364	355	-22.40	-18.40	0.821428571428571	5.5	2-19,363-346	1-1,364-364[UP5];20-21,345-344[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUUAGAAAAAUUAUGGAUAGU&UUUAUCCAUGAUUUUUUUAUU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN59911_c0_g1_355_TPlot.pdf
TRINITY_DN59920_c0_g1:575	si_a414	TRINITY_DN59920_c0_g1	564	583	575	-18.10	-12.30	0.679558011049724	4	1-6,583-578;8-20,577-565	7-7,x-x[BULq];21-21,564-564[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AGUAUUUAUUUAAA-AUAAAU&GUUUAUAUUUAAAUAAAUAUA	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN59920_c0_g1_575_TPlot.pdf
TRINITY_DN59924_c0_g1:4680	si_s108	TRINITY_DN59924_c0_g1	4669	4689	4680	-27.60	-18.10	0.655797101449275	6	1-13,4689-4677;16-19,4674-4671	14-15,4676-4675[SIL];20-21,4670-4669[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	UAUUUUAGAUUUUCUAGUCCG&CGGAUUGGAAAAUAGAAAAAU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN59924_c0_g1_4680_TPlot.pdf
TRINITY_DN59924_c0_g1:4697	si_a87	TRINITY_DN59924_c0_g1	4688	4706	4697	-27.10	-19.08	0.704059040590406	5	1-11,4706-4696;16-21,4693-4688	12-15,4695-4694[AILq]	((((((..--(((((((((((&)))))))))))....))))))	CGUUACAG--UCUUAAUAAUG&CAUUAUUAAGAAAAGGUAACG	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a87_TRINITY_DN59924_c0_g1_4697_TPlot.pdf
TRINITY_DN5992_c2_g1:15	si_s819	TRINITY_DN5992_c2_g1	4	24	15	-23.00	-15.00	0.652173913043478	7	1-11,24-14;14-18,11-7	12-13,13-12[SIL];19-21,6-4[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	AAGUUUCAAGAUUAAGAAAGG&CUUUUCUUAAUAAUGAAAAAC	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN5992_c2_g1_15_TPlot.pdf
TRINITY_DN5992_c2_g1:303	si_s6	TRINITY_DN5992_c2_g1	292	311	303	-21.70	-15.80	0.728110599078341	7.5	1-5,311-307;7-20,306-293	6-6,x-x[BULq];21-21,292-292[UP3]	.((((((((((((((-(((((&))))).)))))))))))))).	CGUGGUAGUAAUAAG-GGUGU&AUAUUACUUAUUAUUACUAUA	4	0.976644186259778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN5992_c2_g1_303_TPlot.pdf
TRINITY_DN59932_c0_g1:80	si_a782	TRINITY_DN59932_c0_g1	69	89	80	-26.40	-19.70	0.746212121212121	7	1-10,89-80;12-17,78-73	11-11,79-79[SIL];18-21,72-69[UP3]	....((((((.((((((((((&)))))))))).))))))....	CCACGAAGGAAAGAAGAGUUG&CAACUCUUCUAUUUUUCUAUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN59932_c0_g1_80_TPlot.pdf
TRINITY_DN59936_c0_g1:1354	si_s63	TRINITY_DN59936_c0_g1	1343	1363	1354	-25.80	-17.20	0.666666666666667	10	2-13,1362-1351	1-1,1363-1363[UP5];14-21,1350-1343[UP3]	........((((((((((((.&.))))))))))))........	ACUUUUGAAGAAGUUGCUGAA&GUUAGCAACUUCUAUUUUUUU	4	0.999999334405607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN59936_c0_g1_1354_TPlot.pdf
TRINITY_DN59936_c0_g1:1511	si_a551	TRINITY_DN59936_c0_g1	1500	1520	1511	-31.60	-23.60	0.746835443037975	7.5	3-12,1518-1509;14-20,1507-1501	1-2,1520-1519[UP5];13-13,1508-1508[SIL];21-21,1500-1500[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	AGGGAGGUCGAGAAGUAGACG&AAUCUAUUUCUUUAUCUCCCC	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN59936_c0_g1_1511_TPlot.pdf
TRINITY_DN59936_c0_g1:1512	si_a550	TRINITY_DN59936_c0_g1	1501	1521	1512	-30.90	-23.60	0.763754045307443	8	4-13,1518-1509;15-21,1507-1501	1-3,1521-1519[UP5];14-14,1508-1508[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GGGAGGUCGAGAAGUAGACGA&CAAUCUAUUUCUUUAUCUCCC	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN59936_c0_g1_1512_TPlot.pdf
TRINITY_DN59936_c0_g1:1513	si_a549	TRINITY_DN59936_c0_g1	1502	1522	1513	-29.50	-20.30	0.688135593220339	10	5-14,1518-1509;16-21,1507-1502	1-4,1522-1519[UP5];15-15,1508-1508[SIL]	((((((.((((((((((....&....)))))))))).))))))	GGAGGUCGAGAAGUAGACGAC&UCAAUCUAUUUCUUUAUCUCC	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN59936_c0_g1_1513_TPlot.pdf
TRINITY_DN59936_c0_g1:1575	si_a62	TRINITY_DN59936_c0_g1	1564	1584	1575	-32.20	-21.70	0.673913043478261	7	1-11,1584-1574;13-15,1572-1570;17-19,1568-1566;21-21,1564-1564	12-12,1573-1573[SIL];16-16,1569-1569[SIL];20-20,1565-1565[SIL]	(.(((.(((.(((((((((((&))))))))))).))).))).)	GGGAUAUGACAGGAGCGGGUC&GACUCGCUUCUUUCAAAUUGU	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN59936_c0_g1_1575_TPlot.pdf
TRINITY_DN59936_c0_g1:1577	si_a60	TRINITY_DN59936_c0_g1	1566	1586	1577	-32.20	-21.60	0.670807453416149	7.5	3-13,1584-1574;15-17,1572-1570;19-21,1568-1566	1-2,1586-1585[UP5];14-14,1573-1573[SIL];18-18,1569-1569[SIL]	(((.(((.(((((((((((..&..))))))))))).))).)))	GAUAUGACAGGAGCGGGUCUC&UCGACUCGCUUCUUUCAAAUU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN59936_c0_g1_1577_TPlot.pdf
TRINITY_DN59936_c0_g1:1815	si_a139	TRINITY_DN59936_c0_g1	1804	1824	1815	-25.90	-17.40	0.671814671814672	6.5	1-12,1824-1813;14-20,1811-1805	13-13,1812-1812[SIL];21-21,1804-1804[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	UGAUGGCGUUGAUUAAUUGCU&AGUAAUUAAUCGUUGUUGUUU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN59936_c0_g1_1815_TPlot.pdf
TRINITY_DN59936_c0_g1:1816	si_a138	TRINITY_DN59936_c0_g1	1805	1825	1816	-26.30	-18.50	0.703422053231939	5	1-13,1825-1813;15-21,1811-1805	14-14,1812-1812[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAUGGCGUUGAUUAAUUGCUA&UAGUAAUUAAUCGUUGUUGUU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN59936_c0_g1_1816_TPlot.pdf
TRINITY_DN59936_c0_g1:1818	si_a136	TRINITY_DN59936_c0_g1	1807	1827	1818	-25.70	-18.30	0.712062256809339	5	1-15,1827-1813;17-20,1811-1808	16-16,1812-1812[SIL];21-21,1807-1807[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	UGGCGUUGAUUAAUUGCUAUU&AAUAGUAAUUAAUCGUUGUUG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN59936_c0_g1_1818_TPlot.pdf
TRINITY_DN59936_c0_g1:86	si_s72	TRINITY_DN59936_c0_g1	75	95	86	-24.10	-15.70	0.651452282157676	9.5	1-7,95-89;9-18,87-78	8-8,88-88[SIL];19-21,77-75[UP3]	...((((((((((.(((((((&))))))).))))))))))...	UCUGAAAGAGAGGUGAUAGAG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN59936_c0_g1_86_TPlot.pdf
TRINITY_DN59936_c0_g1:88	si_s70	TRINITY_DN59936_c0_g1	77	97	88	-25.80	-19.90	0.771317829457364	7.5	1-9,97-89;11-20,87-78	10-10,88-88[SIL];21-21,77-77[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UGAAAGAGAGGUGAUAGAGGU&ACUUCUAUUUUUUUUCUUUCC	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN59936_c0_g1_88_TPlot.pdf
TRINITY_DN59936_c0_g1:89	si_s69	TRINITY_DN59936_c0_g1	78	98	89	-23.40	-21.10	0.901709401709402	6	1-10,98-89;12-21,87-78	11-11,88-88[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	GAAAGAGAGGUGAUAGAGGUU&AACUUCUAUUUUUUUUCUUUC	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN59936_c0_g1_89_TPlot.pdf
TRINITY_DN59936_c0_g1:90	si_s68	TRINITY_DN59936_c0_g1	79	99	90	-23.10	-20.60	0.891774891774892	5.5	1-11,99-89;13-21,87-79	12-12,88-88[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AAAGAGAGGUGAUAGAGGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN59936_c0_g1_90_TPlot.pdf
TRINITY_DN59936_c0_g1:91	si_s67	TRINITY_DN59936_c0_g1	80	100	91	-25.60	-21.50	0.83984375	5	1-12,100-89;14-21,87-80	13-13,88-88[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AAGAGAGGUGAUAGAGGUUGU&GCAACUUCUAUUUUUUUUCUU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN59936_c0_g1_91_TPlot.pdf
TRINITY_DN59936_c0_g1:92	si_s66	TRINITY_DN59936_c0_g1	81	101	92	-26.30	-20.60	0.783269961977186	6	2-13,100-89;15-21,87-81	1-1,101-101[UP5];14-14,88-88[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AGAGAGGUGAUAGAGGUUGUG&AGCAACUUCUAUUUUUUUUCU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN59936_c0_g1_92_TPlot.pdf
TRINITY_DN59936_c0_g1:93	si_s65	TRINITY_DN59936_c0_g1	82	102	93	-26.00	-19.30	0.742307692307692	8	3-14,100-89;16-21,87-82	1-2,102-101[UP5];15-15,88-88[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GAGAGGUGAUAGAGGUUGUGC&UAGCAACUUCUAUUUUUUUUC	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN59936_c0_g1_93_TPlot.pdf
TRINITY_DN59936_c0_g1:94	si_s64	TRINITY_DN59936_c0_g1	83	103	94	-24.10	-16.10	0.66804979253112	10	4-15,100-89;17-21,87-83	1-3,103-101[UP5];16-16,88-88[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	AGAGGUGAUAGAGGUUGUGCG&UUAGCAACUUCUAUUUUUUUU	3	0.999999999912465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN59936_c0_g1_94_TPlot.pdf
TRINITY_DN5993_c0_g1:1282	si_a232	TRINITY_DN5993_c0_g1	1268	1291	1282	-28.20	-18.50	0.656028368794326	10.5	1-10,1291-1282;11-17,1278-1272;20-21,1269-1268	x-x,1281-1279[BULt];18-19,1271-1270[SIL]	((..(((((((...((((((((((&))))))))))---)))))))..))	GAGGGGAUUGAAAUUUGUAGAAGC&GUUUCUAUAA---UCAAUUCGAUC	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN5993_c0_g1_1282_TPlot.pdf
TRINITY_DN5993_c0_g1:1825	si_s39	TRINITY_DN5993_c0_g1	1814	1834	1825	-22.30	-19.50	0.874439461883408	7.5	4-20,1831-1815	1-3,1834-1832[UP5];21-21,1814-1814[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAGUCCAAUUAUUAAGGAAAU&AAAUCUUUAAUAAUUGGAUUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN5993_c0_g1_1825_TPlot.pdf
TRINITY_DN5993_c0_g1:2232	si_a148	TRINITY_DN5993_c0_g1	2221	2241	2232	-30.30	-19.90	0.656765676567657	8.5	2-4,2240-2238;6-20,2236-2222	1-1,2241-2241[UP5];5-5,2237-2237[SIL];21-21,2221-2221[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	AUGAUCUUAGGAUAGCUACGU&UCGUUGUUGUUUUAAGGUCAA	2	0.999962114789459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN5993_c0_g1_2232_TPlot.pdf
TRINITY_DN59947_c0_g1:2302	si_s808	TRINITY_DN59947_c0_g1	2291	2311	2302	-28.60	-18.60	0.65034965034965	8.5	1-10,2311-2302;12-17,2300-2295	11-11,2301-2301[SIL];18-21,2294-2291[UP3]	....((((((.((((((((((&)))))))))).))))))....	CUGCGAGAAGCUGACGAAGGU&AUCUUCGUUACCUUUUCUUAA	2	0.999999991490649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN59947_c0_g1_2302_TPlot.pdf
TRINITY_DN59947_c0_g1:2304	si_s806	TRINITY_DN59947_c0_g1	2293	2313	2304	-28.60	-18.60	0.65034965034965	8.5	3-12,2311-2302;14-19,2300-2295	1-2,2313-2312[UP5];13-13,2301-2301[SIL];20-21,2294-2293[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	GCGAGAAGCUGACGAAGGUCG&UUAUCUUCGUUACCUUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN59947_c0_g1_2304_TPlot.pdf
TRINITY_DN59949_c0_g1:769	si_a318	TRINITY_DN59949_c0_g1	757	778	769	-22.50	-16.00	0.711111111111111	5.5	2-11,777-768;12-20,766-758	1-1,778-778[UP5];x-x,767-767[BULt];21-21,757-757[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	CUAAGAAAAUGUAUGGAUAAAG&AUUUAUCCAUG-AUUUUUUUAU	4	0.999997928537389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN59949_c0_g1_769_TPlot.pdf
TRINITY_DN5994_c0_g2:1030	si_s76	TRINITY_DN5994_c0_g2	1019	1039	1030	-23.60	-17.70	0.75	10	3-8,1037-1032;10-21,1030-1019	1-2,1039-1038[UP5];9-9,1031-1031[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AAGAAAGGAAAGUGGGGAGCG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN5994_c0_g2_1030_TPlot.pdf
TRINITY_DN5994_c0_g2:3200	si_s667	TRINITY_DN5994_c0_g2	3189	3214	3200	-28.90	-19.00	0.657439446366782	15.5	2-5,3213-3210;6-19,3204-3191	1-1,3214-3214[UP5];x-x,3209-3205[BULt];20-21,3190-3189[UP3]	..((((((((((((((.....((((.&.))))-----))))))))))))))..	GGUCUAUGAUCGGUUCGUUUUGAUCG&GGAUC-----GAAUUGAUUAUAGAAA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s667_TRINITY_DN5994_c0_g2_3200_TPlot.pdf
TRINITY_DN5994_c0_g2:6604	si_a409	TRINITY_DN5994_c0_g2	6591	6613	6604	-19.50	-12.80	0.656410256410256	7	1-13,6613-6601;15-19,6597-6593	14-14,6600-6598[AILt];20-21,6592-6591[UP3]	..(((((...(((((((((((((&)))))))))))))--.)))))..	UGAUUUAUAUAUAUAGACAAAGC&GUUUUGUUUAUAU--UUAAAUAA	2	0.999999998961511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN5994_c0_g2_6604_TPlot.pdf
TRINITY_DN59960_c0_g1:82	si_s553	TRINITY_DN59960_c0_g1	71	91	82	-23.50	-15.60	0.663829787234043	11.5	6-15,86-77;17-21,75-71	1-5,91-87[UP5];16-16,76-76[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	CCGGGCGUAUUAAUUCAAGUU&AAAUAGAAUUAAUAUUUUCGG	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN59960_c0_g1_82_TPlot.pdf
TRINITY_DN59971_c0_g1:367	si_a18	TRINITY_DN59971_c0_g1	356	376	367	-26.30	-17.64	0.670722433460076	13.5	3-10,374-367;16-21,361-356	1-2,376-375[UP5];11-15,366-362[SIL]	((((((.....((((((((..&..)))))))).....))))))	GAACUGUCCCGGAGUGGGCGG&AAGCCUAUUUAUUUUUAGUUC	4	0.999961159251471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN59971_c0_g1_367_TPlot.pdf
TRINITY_DN59980_c0_g1:1174	si_a125	TRINITY_DN59980_c0_g1	1163	1183	1174	-25.00	-16.90	0.676	14.5	8-21,1176-1163	1-7,1183-1177[UP5]	((((((((((((((.......&.......))))))))))))))	AGUUGCUGUUGCUACAGCUGG&UGUUUUAUAGCAAUAGUAAUU	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN59980_c0_g1_1174_TPlot.pdf
TRINITY_DN59980_c0_g1:1416	si_s612	TRINITY_DN59980_c0_g1	1405	1425	1416	-28.20	-20.30	0.719858156028369	10.5	6-21,1420-1405	1-5,1425-1421[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUGCUUGGAUUUAGAUCAUC&UCUUUUUUAAAUCCAAGCGAU	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN59980_c0_g1_1416_TPlot.pdf
TRINITY_DN59981_c0_g1:276	si_s291	TRINITY_DN59981_c0_g1	265	282	276	-38.10	-24.80	0.650918635170604	8	1-3,282-280;6-9,279-276;11-20,275-266	4-5,x-x[BULq];10-10,x-x[BULq];21-21,265-265[UP3]	.((((((((((-((((--(((&)))..)))).)))))))))).	AGCAAUUCCGA-CGAC--GGC&GCCUAGUCGAUUGGAAUUGCG	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN59981_c0_g1_276_TPlot.pdf
TRINITY_DN59981_c0_g1:353	si_s803	TRINITY_DN59981_c0_g1	335	362	353	-26.00	-18.00	0.692307692307692	10.5	2-14,361-349;15-21,341-335	1-1,362-362[UP5];x-x,348-342[BULt]	(((((((.......(((((((((((((.&.)))))))))))))-------)))))))	AAAAGGUUGAUGAUGAUGAAGAUAAGAA&AUUUUAUCUUCGUU-------ACCUUUU	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN59981_c0_g1_353_TPlot.pdf
TRINITY_DN59981_c0_g1:432	si_s802	TRINITY_DN59981_c0_g1	421	441	432	-26.40	-17.30	0.65530303030303	6	3-16,439-426;18-21,424-421	1-2,441-440[UP5];17-17,425-425[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAAGAUAAUGAAGAUAAGAAA&UAUUUUAUCUUCGUUACCUUU	4	0.999999999994271	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN59981_c0_g1_432_TPlot.pdf
TRINITY_DN5998_c0_g1:985	si_a462	TRINITY_DN5998_c0_g1	974	998	985	-21.20	-14.20	0.669811320754717	11	1-7,998-992;8-18,987-977	x-x,991-988[BULt];19-21,976-974[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	GUUUUACAUAUUAUUAUAAUAUAAC&GUUAUAU----AUAAUAUGUAAUUA	2	0.988388058632615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN5998_c0_g1_985_TPlot.pdf
TRINITY_DN5998_c0_g1:986	si_a461	TRINITY_DN5998_c0_g1	975	999	986	-21.50	-15.00	0.697674418604651	10	1-8,999-992;9-19,987-977	x-x,991-988[BULt];20-21,976-975[UP3]	..(((((((((((....((((((((&))))))))----)))))))))))..	UUUUACAUAUUAUUAUAAUAUAACA&UGUUAUAU----AUAAUAUGUAAUU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN5998_c0_g1_986_TPlot.pdf
TRINITY_DN5998_c0_g1:987	si_a460	TRINITY_DN5998_c0_g1	976	1000	987	-21.60	-15.20	0.703703703703704	10	2-9,999-992;10-20,987-977	1-1,1000-1000[UP5];x-x,991-988[BULt];21-21,976-976[UP3]	.(((((((((((....((((((((.&.))))))))----))))))))))).	UUUACAUAUUAUUAUAAUAUAACAU&UUGUUAUAU----AUAAUAUGUAAU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN5998_c0_g1_987_TPlot.pdf
TRINITY_DN59995_c0_g1:407	si_a745	TRINITY_DN59995_c0_g1	397	417	407	-42.00	-28.30	0.673809523809524	8.5	2-4,416-414;5-11,412-406;14-20,404-398	1-1,417-417[UP5];x-x,413-413[BULt];12-13,405-405[AILq];21-21,397-397[UP3]	.(((((((.-(((((((.(((.&.)))-)))))))..))))))).	CGAGGAGGA-CGUGGCCGAGGA&CCCU-GGCCAUGAACCUCCUUU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN59995_c0_g1_407_TPlot.pdf
TRINITY_DN599_c0_g1:370	si_s96	TRINITY_DN599_c0_g1	357	379	370	-37.20	-26.20	0.704301075268817	10	1-5,379-375;7-11,373-369;12-20,366-358	6-6,374-374[SIL];x-x,368-367[BULt];21-21,357-357[UP3]	.(((((((((..(((((.(((((&))))).)))))--))))))))).	CCCAGUCUGAUCGGCGAUGGAGA&UCUUCUUCGCU--UCGGAUUGGA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN599_c0_g1_370_TPlot.pdf
TRINITY_DN599_c0_g1:523	si_s435	TRINITY_DN599_c0_g1	512	532	523	-20.90	-13.60	0.650717703349282	7	2-6,531-527;9-19,524-514	1-1,532-532[UP5];7-8,526-525[SIL];20-21,513-512[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	GAAUAUAAUAUGUUUUUAUUA&CAAUAAUUACAUAUUAUAUAU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN599_c0_g1_523_TPlot.pdf
TRINITY_DN5_c0_g1:1169	si_a66	TRINITY_DN5_c0_g1	1158	1178	1169	-26.70	-18.30	0.685393258426966	9	1-11,1178-1168;13-15,1166-1164;17-19,1162-1160	12-12,1167-1167[SIL];16-16,1163-1163[SIL];20-21,1159-1158[UP3]	..(((.(((.(((((((((((&))))))))))).))).)))..	CUGAAGAGUAUGGAGGGAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999993731687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN5_c0_g1_1169_TPlot.pdf
TRINITY_DN5_c0_g1:1183	si_a788	TRINITY_DN5_c0_g1	1171	1192	1183	-24.80	-16.20	0.653225806451613	7.5	1-5,1192-1188;7-15,1186-1178;16-19,1176-1173	6-6,1187-1187[SIL];x-x,1177-1177[BULt];20-21,1172-1171[UP3]	..((((.(((((((((.(((((&))))).)))))))))-))))..	AGGGAGCGAUGGAAAAUUAGAG&UUCUAUUUUUCUAUU-UUCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN5_c0_g1_1183_TPlot.pdf
TRINITY_DN5_c0_g1:1184	si_a787	TRINITY_DN5_c0_g1	1172	1193	1184	-26.30	-19.30	0.73384030418251	6.5	1-6,1193-1188;8-16,1186-1178;17-20,1176-1173	7-7,1187-1187[SIL];x-x,1177-1177[BULt];21-21,1172-1172[UP3]	.((((.(((((((((.((((((&)))))).)))))))))-)))).	GGGAGCGAUGGAAAAUUAGAGG&CUUCUAUUUUUCUAUU-UUCCA	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN5_c0_g1_1184_TPlot.pdf
TRINITY_DN5_c0_g1:1185	si_a786	TRINITY_DN5_c0_g1	1173	1194	1185	-26.60	-20.30	0.763157894736842	5.5	1-7,1194-1188;9-17,1186-1178;18-21,1176-1173	8-8,1187-1187[SIL];x-x,1177-1177[BULt]	((((.(((((((((.(((((((&))))))).)))))))))-))))	GGAGCGAUGGAAAAUUAGAGGA&UCUUCUAUUUUUCUAUU-UUCC	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN5_c0_g1_1185_TPlot.pdf
TRINITY_DN5_c0_g1:1187	si_a784	TRINITY_DN5_c0_g1	1176	1196	1187	-24.70	-16.60	0.672064777327935	9	3-9,1194-1188;11-19,1186-1178	1-2,1196-1195[UP5];10-10,1187-1187[SIL];20-21,1177-1176[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	GCGAUGGAAAAUUAGAGGAUC&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999859993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN5_c0_g1_1187_TPlot.pdf
TRINITY_DN5_c0_g1:1188	si_a783	TRINITY_DN5_c0_g1	1177	1197	1188	-24.70	-16.60	0.672064777327935	10	4-10,1194-1188;12-20,1186-1178	1-3,1197-1195[UP5];11-11,1187-1187[SIL];21-21,1177-1177[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	CGAUGGAAAAUUAGAGGAUCU&AACUCUUCUAUUUUUCUAUUU	2	0.999999999149024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN5_c0_g1_1188_TPlot.pdf
TRINITY_DN5_c0_g1:1250	si_a81	TRINITY_DN5_c0_g1	1239	1259	1250	-23.00	-16.00	0.695652173913043	6	1-10,1259-1250;12-19,1248-1241	11-11,1249-1249[SIL];20-21,1240-1239[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GGUUUCUUGAAGAUGAAAAAU&GUUUUUCAUUAUUAAGAAAAG	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN5_c0_g1_1250_TPlot.pdf
TRINITY_DN5_c0_g1:1251	si_a80	TRINITY_DN5_c0_g1	1240	1260	1251	-22.10	-16.80	0.760180995475113	5.5	1-11,1260-1250;13-20,1248-1241	12-12,1249-1249[SIL];21-21,1240-1240[UP3]	.((((((((.(((((((((((&))))))))))).)))))))).	GUUUCUUGAAGAUGAAAAAUA&UGUUUUUCAUUAUUAAGAAAA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN5_c0_g1_1251_TPlot.pdf
TRINITY_DN60001_c0_g1:336	si_s602	TRINITY_DN60001_c0_g1	325	345	336	-28.10	-18.80	0.669039145907473	9.5	1-4,345-342;6-14,340-332	5-5,341-341[SIL];15-21,331-325[UP3]	.......(((((((((.((((&)))).))))))))).......	UUUUUAUGAGAUUCGCAUGGA&UCCAAGCGAAUCUUUUUUAAA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN60001_c0_g1_336_TPlot.pdf
TRINITY_DN60001_c0_g1:337	si_s601	TRINITY_DN60001_c0_g1	326	346	337	-28.30	-18.80	0.664310954063604	9.5	2-5,345-342;7-15,340-332	1-1,346-346[UP5];6-6,341-341[SIL];16-21,331-326[UP3]	......(((((((((.((((.&.)))).)))))))))......	UUUUAUGAGAUUCGCAUGGAA&AUCCAAGCGAAUCUUUUUUAA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN60001_c0_g1_337_TPlot.pdf
TRINITY_DN60001_c0_g1:339	si_s599	TRINITY_DN60001_c0_g1	328	348	339	-27.80	-18.80	0.676258992805755	11.5	4-7,345-342;9-17,340-332	1-3,348-346[UP5];8-8,341-341[SIL];18-21,331-328[UP3]	....(((((((((.((((...&...)))).)))))))))....	UUAUGAGAUUCGCAUGGAAGG&AAAUCCAAGCGAAUCUUUUUU	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN60001_c0_g1_339_TPlot.pdf
TRINITY_DN60001_c0_g1:341	si_s597	TRINITY_DN60001_c0_g1	330	350	341	-28.40	-18.80	0.661971830985915	13.5	6-9,345-342;11-19,340-332	1-5,350-346[UP5];10-10,341-341[SIL];20-21,331-330[UP3]	..(((((((((.((((.....&.....)))).)))))))))..	AUGAGAUUCGCAUGGAAGGUG&AUAAAUCCAAGCGAAUCUUUU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN60001_c0_g1_341_TPlot.pdf
TRINITY_DN60001_c0_g1:457	si_a406	TRINITY_DN60001_c0_g1	446	466	457	-19.80	-12.90	0.651515151515151	11	3-8,464-459;10-18,457-449	1-2,466-465[UP5];9-9,458-458[SIL];19-21,448-446[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	AUCAGAUGUGAAGAAGACAUC&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN60001_c0_g1_457_TPlot.pdf
TRINITY_DN60001_c0_g1:458	si_a405	TRINITY_DN60001_c0_g1	447	467	458	-19.80	-12.90	0.651515151515151	11.5	4-9,464-459;11-19,457-449	1-3,467-465[UP5];10-10,458-458[SIL];20-21,448-447[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	UCAGAUGUGAAGAAGACAUCG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN60001_c0_g1_458_TPlot.pdf
TRINITY_DN60010_c0_g1:1311	si_s68	TRINITY_DN60010_c0_g1	1297	1320	1311	-23.10	-15.40	0.666666666666667	9.5	1-1,1320-1320;4-14,1317-1307;15-21,1303-1297	2-3,1319-1318[SIL];x-x,1306-1304[BULt]	(((((((...(((((((((((..(&)..)))))))))))---)))))))	AAAGAAAAAUGAAAGUGGAAGCGG&CAACUUCUAUUUUU---UUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN60010_c0_g1_1311_TPlot.pdf
TRINITY_DN60010_c0_g1:2391	si_s317	TRINITY_DN60010_c0_g1	2380	2400	2391	-33.10	-22.70	0.685800604229607	8.5	2-15,2399-2386	1-1,2400-2400[UP5];16-21,2385-2380[UP3]	......((((((((((((((.&.))))))))))))))......	UCGAAGGACAAGAAGGGCAGU&UCUGUCCUUCUUGUUACAAAC	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN60010_c0_g1_2391_TPlot.pdf
TRINITY_DN60010_c0_g1:2543	si_a761	TRINITY_DN60010_c0_g1	2530	2552	2543	-30.10	-21.90	0.727574750830565	8.5	1-10,2552-2543;11-21,2540-2530	x-x,2542-2541[BULt]	(((((((((((..((((((((((&))))))))))--)))))))))))	AGUCGAUCGAAAUGAUUCAAAGG&CCUUUGGGUU--UUUGAUUGAUU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN60010_c0_g1_2543_TPlot.pdf
TRINITY_DN60010_c0_g1:2544	si_a760	TRINITY_DN60010_c0_g1	2531	2553	2544	-31.10	-21.20	0.681672025723473	9.5	2-11,2552-2543;12-21,2540-2531	1-1,2553-2553[UP5];x-x,2542-2541[BULt]	((((((((((..((((((((((.&.))))))))))--))))))))))	GUCGAUCGAAAUGAUUCAAAGGG&UCCUUUGGGUU--UUUGAUUGAU	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN60010_c0_g1_2544_TPlot.pdf
TRINITY_DN60010_c0_g1:2612	si_s68	TRINITY_DN60010_c0_g1	2601	2622	2612	-23.10	-16.00	0.692640692640693	10	4-8,2619-2615;9-21,2613-2601	1-3,2622-2620[UP5];x-x,2614-2614[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GAAGAAAGAAAGUCAGAGGAAA&CAACUUCU-AUUUUUUUUCUUU	2	0.999999979915469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN60010_c0_g1_2612_TPlot.pdf
TRINITY_DN60010_c0_g1:3386	si_s76	TRINITY_DN60010_c0_g1	3367	3395	3386	-23.60	-15.50	0.656779661016949	13	2-13,3394-3383;14-20,3374-3368	1-1,3395-3395[UP5];x-x,3382-3375[BULt];21-21,3367-3367[UP3]	.(((((((........((((((((((((.&.))))))))))))--------))))))).	CGGAAAGGUUCCACAAGAAGAAGAAGAAA&AUUUUUUUUCUUU--------CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN60010_c0_g1_3386_TPlot.pdf
TRINITY_DN60010_c0_g1:3392	si_s82	TRINITY_DN60010_c0_g1	3381	3399	3392	-28.90	-19.70	0.681660899653979	5.5	1-8,3399-3392;11-21,3391-3381	9-10,x-x[BULq]	(((((((((((--((((((((&))))))))..)))))))))))	AAGAAGAAGAA--GAAAGAGG&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN60010_c0_g1_3392_TPlot.pdf
TRINITY_DN60010_c0_g1:3393	si_s69	TRINITY_DN60010_c0_g1	3382	3401	3393	-23.40	-16.40	0.700854700854701	7	2-7,3400-3395;9-20,3394-3383	1-1,3401-3401[UP5];8-8,x-x[BULq];21-21,3382-3382[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AGAAGAAGAAGAA-AGAGGUG&AACUUCUAUUUUUUUUCUUUC	2	0.999999999982913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN60010_c0_g1_3393_TPlot.pdf
TRINITY_DN60010_c0_g1:3394	si_s68	TRINITY_DN60010_c0_g1	3383	3402	3394	-23.10	-16.20	0.701298701298701	8	3-8,3400-3395;10-21,3394-3383	1-2,3402-3401[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	GAAGAAGAAGAA-AGAGGUGA&CAACUUCUAUUUUUUUUCUUU	3	0.999999999894971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN60010_c0_g1_3394_TPlot.pdf
TRINITY_DN60010_c0_g1:3397	si_s811	TRINITY_DN60010_c0_g1	3385	3406	3397	-26.40	-19.00	0.71969696969697	8	1-13,3406-3394;14-16,3392-3390	x-x,3393-3393[BULt];17-21,3389-3385[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	AGAAGAAGAAAGAGGUGACGAA&UUCGUUACCUUUU-CUUAAUAA	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN60010_c0_g1_3397_TPlot.pdf
TRINITY_DN60010_c0_g1:3399	si_s809	TRINITY_DN60010_c0_g1	3387	3408	3399	-28.50	-19.20	0.673684210526316	8.5	3-15,3406-3394;16-18,3392-3390	1-2,3408-3407[UP5];x-x,3393-3393[BULt];19-21,3389-3387[UP3]	...(((.(((((((((((((..&..)))))))))))))-)))...	AAGAAGAAAGAGGUGACGAAAC&UCUUCGUUACCUUUU-CUUAAU	4	0.999999969278308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN60010_c0_g1_3399_TPlot.pdf
TRINITY_DN60010_c0_g1:3400	si_s808	TRINITY_DN60010_c0_g1	3388	3409	3400	-28.60	-19.20	0.671328671328671	9.5	4-16,3406-3394;17-19,3392-3390	1-3,3409-3407[UP5];x-x,3393-3393[BULt];20-21,3389-3388[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	AGAAGAAAGAGGUGACGAAACA&AUCUUCGUUACCUUUU-CUUAA	2	0.999993766928481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN60010_c0_g1_3400_TPlot.pdf
TRINITY_DN60010_c0_g1:3405	si_s803	TRINITY_DN60010_c0_g1	3394	3414	3405	-26.00	-17.20	0.661538461538462	16	9-21,3406-3394	1-8,3414-3407[UP5]	(((((((((((((........&........)))))))))))))	AAGAGGUGACGAAACAGAAGA&AUUUUAUCUUCGUUACCUUUU	2	0.999999990830869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN60010_c0_g1_3405_TPlot.pdf
TRINITY_DN60010_c0_g1:3432	si_s78	TRINITY_DN60010_c0_g1	3421	3441	3432	-26.20	-17.26	0.658778625954199	10.5	1-5,3441-3437;10-21,3432-3421	6-9,3436-3433[SIL]	((((((((((((....(((((&)))))....))))))))))))	GGAAGAAAGGGAUACUGAAAA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN60010_c0_g1_3432_TPlot.pdf
TRINITY_DN60010_c0_g1:3547	si_a67	TRINITY_DN60010_c0_g1	3536	3556	3547	-27.20	-21.80	0.801470588235294	5	1-10,3556-3547;12-14,3545-3543;16-21,3541-3536	11-11,3546-3546[SIL];15-15,3542-3542[SIL]	((((((.(((.((((((((((&)))))))))).))).))))))	GAAGAGGAAUCUGAAAGAGGC&GCUUCUUUCAAAUUGUUUUUC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN60010_c0_g1_3547_TPlot.pdf
TRINITY_DN60010_c0_g1:3625	si_a405	TRINITY_DN60010_c0_g1	3614	3634	3625	-19.80	-16.20	0.818181818181818	5.5	1-18,3634-3617	19-21,3616-3614[UP3]	...((((((((((((((((((&))))))))))))))))))...	ACUGAUAUAAAUAGAACAAUU&AAUUGUUUUGUUUAUAUUUAA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN60010_c0_g1_3625_TPlot.pdf
TRINITY_DN60010_c0_g1:3627	si_a403	TRINITY_DN60010_c0_g1	3616	3636	3627	-22.00	-21.00	0.954545454545455	3.5	1-20,3636-3617	21-21,3616-3616[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UGAUAUAAAUAGAACAAUUCU&AGAAUUGUUUUGUUUAUAUUU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN60010_c0_g1_3627_TPlot.pdf
TRINITY_DN60010_c0_g1:3630	si_a400	TRINITY_DN60010_c0_g1	3619	3639	3630	-22.80	-19.50	0.855263157894737	5	3-21,3637-3619	1-2,3639-3638[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UAUAAAUAGAACAAUUCUGGA&UAUAGAAUUGUUUUGUUUAUA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN60010_c0_g1_3630_TPlot.pdf
TRINITY_DN60010_c0_g1:3631	si_a399	TRINITY_DN60010_c0_g1	3620	3640	3631	-22.60	-18.10	0.800884955752212	7	4-21,3637-3620	1-3,3640-3638[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUAAAUAGAACAAUUCUGGAU&AUAUAGAAUUGUUUUGUUUAU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN60010_c0_g1_3631_TPlot.pdf
TRINITY_DN60010_c0_g1:3632	si_a398	TRINITY_DN60010_c0_g1	3621	3641	3632	-22.40	-17.10	0.763392857142857	9	5-21,3637-3621	1-4,3641-3638[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAAAUAGAACAAUUCUGGAUG&AAUAUAGAAUUGUUUUGUUUA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN60010_c0_g1_3632_TPlot.pdf
TRINITY_DN60010_c0_g1:3687	si_a629	TRINITY_DN60010_c0_g1	3676	3697	3687	-26.30	-18.40	0.699619771863118	7.5	2-6,3696-3692;8-14,3689-3683;16-21,3681-3676	1-1,3697-3697[UP5];7-7,3691-3690[AILt];15-15,3682-3682[SIL]	((((((.(((((((..(((((.&.)))))-.))))))).))))))	CAAAAAUGUCGACAGAAAUGCA&CGUAUU-AUGUCGAUUUUUUUG	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN60010_c0_g1_3687_TPlot.pdf
TRINITY_DN60015_c0_g1:31	si_a750	TRINITY_DN60015_c0_g1	19	44	31	-39.70	-26.08	0.656926952141058	14	1-6,44-39;8-15,33-26;16-21,24-19	7-7,38-34[AILt];x-x,25-25[BULt]	((((((.((((((((.....((((((&))))))----.))))))))-))))))	AGCCCACAAGGGGGUGAUGACGUGGU&GCCAUG----AACCUCCUU-UGGGUU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN60015_c0_g1_31_TPlot.pdf
TRINITY_DN60015_c0_g1:341	si_a224	TRINITY_DN60015_c0_g1	331	350	341	-27.40	-18.20	0.664233576642336	8.5	3-15,348-336;19-21,333-331	1-2,350-349[UP5];16-18,335-334[AILq]	(((..-(((((((((((((..&..)))))))))))))...)))	UGAGU-UGGAGAUAUGAGUGA&AAACUCAUGUUUCUAUAAUCA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN60015_c0_g1_341_TPlot.pdf
TRINITY_DN60016_c0_g1:1203	si_a731	TRINITY_DN60016_c0_g1	1192	1213	1203	-44.00	-30.88	0.701818181818182	12	2-9,1212-1205;15-21,1198-1192	1-1,1213-1213[UP5];10-14,1204-1199[AILt]	(((((((......((((((((.&.))))))))-.....)))))))	GCCAGGGUAUGGUGGUGCCCGG&UCGGGCAUC-UUUACCCCUGGC	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a731_TRINITY_DN60016_c0_g1_1203_TPlot.pdf
TRINITY_DN60016_c0_g1:1541	si_a403	TRINITY_DN60016_c0_g1	1530	1550	1541	-22.00	-14.30	0.65	6	1-4,1550-1547;6-12,1545-1539;14-21,1537-1530	5-5,1546-1546[SIL];13-13,1538-1538[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	GGAUGUAGCCAAAACGCUUCU&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN60016_c0_g1_1541_TPlot.pdf
TRINITY_DN60016_c0_g1:1606	si_s633	TRINITY_DN60016_c0_g1	1594	1616	1606	-37.90	-26.30	0.693931398416887	7.5	1-8,1616-1609;9-10,1607-1606;12-14,1604-1602;15-21,1600-1594	x-x,1608-1608[BULt];11-11,1605-1605[SIL];x-x,1601-1601[BULt]	(((((((.(((.((.((((((((&))))))))-)).)))-)))))))	AGGGCAGAACGGCUGAUGAAGAG&CUUUUCGU-AGGCGU-UUGCCCU	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN60016_c0_g1_1606_TPlot.pdf
TRINITY_DN60019_c0_g1:858	si_a66	TRINITY_DN60019_c0_g1	845	867	858	-26.70	-17.38	0.650936329588015	14	1-10,867-858;13-17,853-849	11-12,857-854[AILt];18-21,848-845[UP3]	....(((((....((((((((((&))))))))))--..)))))....	CAUCGCGAUGGAAGAAGGAAGCG&CGCUUCUUUC--AAAUUGUUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN60019_c0_g1_858_TPlot.pdf
TRINITY_DN60021_c0_g1:1090	si_s79	TRINITY_DN60021_c0_g1	1079	1100	1090	-26.20	-17.10	0.652671755725191	9.5	1-8,1100-1093;10-16,1090-1084;18-19,1082-1081	9-9,1092-1091[AILt];17-17,1083-1083[SIL];20-21,1080-1079[UP3]	..((.(((((((..((((((((&))))))))-.))))))).))..	ACGAUGAAGGGAUUAGAGAAGA&UUUUUUCU-UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN60021_c0_g1_1090_TPlot.pdf
TRINITY_DN60021_c0_g1:1093	si_s77	TRINITY_DN60021_c0_g1	1081	1102	1093	-25.50	-17.70	0.694117647058824	8.5	2-10,1101-1093;12-18,1090-1084;20-21,1082-1081	1-1,1102-1102[UP5];11-11,1092-1091[AILt];19-19,1083-1083[SIL]	((.(((((((..(((((((((.&.)))))))))-.))))))).))	GAUGAAGGGAUUAGAGAAGAAU&UUUUUUUUCU-UUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN60021_c0_g1_1093_TPlot.pdf
TRINITY_DN60021_c0_g1:1094	si_s76	TRINITY_DN60021_c0_g1	1082	1103	1094	-23.60	-16.20	0.686440677966102	11.5	3-11,1101-1093;13-19,1090-1084	1-2,1103-1102[UP5];12-12,1092-1091[AILt];20-21,1083-1082[UP3]	..(((((((..(((((((((..&..)))))))))-.)))))))..	AUGAAGGGAUUAGAGAAGAAUU&AUUUUUUUUCU-UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN60021_c0_g1_1094_TPlot.pdf
TRINITY_DN60021_c0_g1:1095	si_s75	TRINITY_DN60021_c0_g1	1083	1104	1095	-24.00	-16.30	0.679166666666667	8.5	1-2,1104-1103;4-12,1101-1093;14-20,1090-1084	3-3,1102-1102[SIL];13-13,1092-1091[AILt];21-21,1083-1083[UP3]	.(((((((..(((((((((.((&)).)))))))))-.))))))).	UGAAGGGAUUAGAGAAGAAUUA&UAUUUUUUUUCU-UUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN60021_c0_g1_1095_TPlot.pdf
TRINITY_DN60021_c0_g1:1096	si_s74	TRINITY_DN60021_c0_g1	1084	1105	1096	-25.00	-18.80	0.752	6.5	1-3,1105-1103;5-13,1101-1093;15-21,1090-1084	4-4,1102-1102[SIL];14-14,1092-1091[AILt]	(((((((..(((((((((.(((&))).)))))))))-.)))))))	GAAGGGAUUAGAGAAGAAUUAG&CUAUUUUUUUUCU-UUCCUUUC	2	0.999435819007082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN60021_c0_g1_1096_TPlot.pdf
TRINITY_DN60021_c0_g1:1097	si_s73	TRINITY_DN60021_c0_g1	1084	1106	1097	-24.00	-17.30	0.720833333333333	7	1-4,1106-1103;6-14,1101-1093;15-21,1090-1084	5-5,1102-1102[SIL];x-x,1092-1091[BULt]	(((((((..(((((((((.((((&)))).)))))))))--)))))))	GAAGGGAUUAGAGAAGAAUUAGA&UCUAUUUUUUUUCU--UUCCUUU	2	0.999999996349634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN60021_c0_g1_1097_TPlot.pdf
TRINITY_DN60021_c0_g1:1098	si_s72	TRINITY_DN60021_c0_g1	1086	1107	1098	-24.10	-16.50	0.684647302904564	7.5	2-5,1106-1103;7-15,1101-1093;17-21,1090-1086	1-1,1107-1107[UP5];6-6,1102-1102[SIL];16-16,1092-1091[AILt]	(((((..(((((((((.((((.&.)))).)))))))))-.)))))	AGGGAUUAGAGAAGAAUUAGAU&UUCUAUUUUUUUUCU-UUCCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN60021_c0_g1_1098_TPlot.pdf
TRINITY_DN60021_c0_g1:1221	si_s41	TRINITY_DN60021_c0_g1	1206	1230	1221	-25.00	-17.00	0.68	9	1-14,1230-1217;15-20,1212-1207	x-x,1216-1213[BULt];21-21,1206-1206[UP3]	.((((((....((((((((((((((&))))))))))))))----)))))).	AGAGAUUACUUCAAUUGUUGGAGAU&AUCUUUAAUAAUUG----GAUUUCA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN60021_c0_g1_1221_TPlot.pdf
TRINITY_DN60021_c0_g1:1222	si_s40	TRINITY_DN60021_c0_g1	1207	1231	1222	-24.30	-16.80	0.691358024691358	9	2-15,1230-1217;16-21,1212-1207	1-1,1231-1231[UP5];x-x,1216-1213[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	GAGAUUACUUCAAUUGUUGGAGAUG&AAUCUUUAAUAAUUG----GAUUUC	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN60021_c0_g1_1222_TPlot.pdf
TRINITY_DN60021_c0_g1:1223	si_s39	TRINITY_DN60021_c0_g1	1212	1232	1223	-22.30	-16.30	0.730941704035874	9.5	3-18,1230-1215	1-2,1232-1231[UP5];19-21,1214-1212[UP3]	...((((((((((((((((..&..))))))))))))))))...	UACUUCAAUUGUUGGAGAUGA&AAAUCUUUAAUAAUUGGAUUU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN60021_c0_g1_1223_TPlot.pdf
TRINITY_DN60021_c0_g1:1224	si_s38	TRINITY_DN60021_c0_g1	1213	1233	1224	-22.70	-16.30	0.718061674008811	10.5	4-19,1230-1215	1-3,1233-1231[UP5];20-21,1214-1213[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUUCAAUUGUUGGAGAUGAA&UAAAUCUUUAAUAAUUGGAUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN60021_c0_g1_1224_TPlot.pdf
TRINITY_DN60021_c0_g1:1225	si_s37	TRINITY_DN60021_c0_g1	1214	1234	1225	-24.40	-16.30	0.668032786885246	11	5-20,1230-1215	1-4,1234-1231[UP5];21-21,1214-1214[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUUCAAUUGUUGGAGAUGAAC&CUAAAUCUUUAAUAAUUGGAU	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN60021_c0_g1_1225_TPlot.pdf
TRINITY_DN60021_c0_g1:1340	si_s803	TRINITY_DN60021_c0_g1	1327	1349	1340	-26.00	-17.60	0.676923076923077	7.5	1-12,1349-1338;13-16,1336-1333;17-21,1331-1327	x-x,1337-1337[BULt];x-x,1332-1332[BULt]	(((((.((((.((((((((((((&))))))))))))-))))-)))))	GGAAGAGUGAUUGGAGAUGAAAU&AUUUUAUCUUCG-UUAC-CUUUU	4	0.99999999970464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN60021_c0_g1_1340_TPlot.pdf
TRINITY_DN60021_c0_g1:1341	si_s802	TRINITY_DN60021_c0_g1	1328	1350	1341	-26.40	-18.60	0.704545454545455	5.5	1-13,1350-1338;14-17,1336-1333;18-21,1331-1328	x-x,1337-1337[BULt];x-x,1332-1332[BULt]	((((.((((.(((((((((((((&)))))))))))))-))))-))))	GAAGAGUGAUUGGAGAUGAAAUA&UAUUUUAUCUUCG-UUAC-CUUU	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN60021_c0_g1_1341_TPlot.pdf
TRINITY_DN60021_c0_g1:406	si_s77	TRINITY_DN60021_c0_g1	394	415	406	-25.50	-18.40	0.72156862745098	6.5	1-17,415-399;18-20,397-395	x-x,398-398[BULt];21-21,394-394[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	UGGGUAAAGGAAAGAGAAAGGG&UUUUUUUUCUUUCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN60021_c0_g1_406_TPlot.pdf
TRINITY_DN60021_c0_g1:409	si_s74	TRINITY_DN60021_c0_g1	398	418	409	-25.00	-17.20	0.688	10	4-20,415-399	1-3,418-416[UP5];21-21,398-398[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAAAGGAAAGAGAAAGGGCUA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN60021_c0_g1_409_TPlot.pdf
TRINITY_DN60021_c0_g1:492	si_a774	TRINITY_DN60021_c0_g1	480	501	492	-29.20	-20.10	0.688356164383562	9	1-3,501-499;5-12,497-490;13-18,488-483	4-4,498-498[SIL];x-x,489-489[BULt];19-21,482-480[UP3]	...((((((.((((((((.(((&))).))))))))-))))))...	ACCAGAAGAUGUUGAGUCUGUC&GAUUGAUUCAAC-UCUUCUAUU	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN60021_c0_g1_492_TPlot.pdf
TRINITY_DN60022_c0_g1:112	si_s312	TRINITY_DN60022_c0_g1	101	127	112	-29.00	-19.40	0.668965517241379	18	3-9,125-119;10-19,112-103	1-2,127-126[UP5];x-x,118-113[BULt];20-21,102-101[UP3]	..((((((((((......(((((((..&..)))))))------))))))))))..	GUGCGAGAAGGAUGUUUACAGAAUUAC&AAAAUUCUG------UCCUUCUUGUUA	1	0.242280297528983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN60022_c0_g1_112_TPlot.pdf
TRINITY_DN60026_c0_g1:1437	si_a119	TRINITY_DN60026_c0_g1	1427	1446	1437	-30.30	-22.00	0.726072607260726	6.5	2-12,1445-1435;14-19,1434-1429	1-1,1446-1446[UP5];13-13,x-x[BULq];20-21,1428-1427[UP3]	..((((((-(((((((((((.&.))))))))))).))))))..	UCUUGCUG-AGAACGAGCUCC&CGAGCUUGUUUUAUAGCAAUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN60026_c0_g1_1437_TPlot.pdf
TRINITY_DN60026_c0_g1:2918	si_a57	TRINITY_DN60026_c0_g1	2905	2927	2918	-36.60	-24.50	0.669398907103825	8	1-13,2927-2915;14-16,2912-2910	x-x,2914-2913[BULt];17-21,2909-2905[UP3]	.....(((..(((((((((((((&)))))))))))))--))).....	CGCCCAGAUCAGCGAGUUGACUC&GAGUCGACUCGCU--UCUUUCAA	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN60026_c0_g1_2918_TPlot.pdf
TRINITY_DN60026_c0_g1:3903	si_a59	TRINITY_DN60026_c0_g1	3892	3911	3903	-34.00	-23.20	0.682352941176471	8.5	1-4,3911-3908;6-16,3907-3897	5-5,x-x[BULq];17-21,3896-3892[UP3]	.....(((((((((((-((((&)))).))))))))))).....	CAUCAAGAGAAGCGAG-CGGC&GUCGACUCGCUUCUUUCAAAU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN60026_c0_g1_3903_TPlot.pdf
TRINITY_DN60028_c0_g1:1744	si_s820	TRINITY_DN60028_c0_g1	1733	1753	1744	-22.10	-14.54	0.657918552036199	6	1-14,1753-1740;20-21,1734-1733	15-19,1739-1735[SIL]	((.....((((((((((((((&)))))))))))))).....))	UGGCCGGCAUUAUUGAGAAAA&UUUUCUUAAUAAUGAAAAACA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN60028_c0_g1_1744_TPlot.pdf
TRINITY_DN60028_c0_g1:1747	si_s817	TRINITY_DN60028_c0_g1	1736	1757	1747	-24.50	-16.80	0.685714285714286	8	2-7,1756-1751;8-17,1749-1740	1-1,1757-1757[UP5];x-x,1750-1750[BULt];18-21,1739-1736[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	CCGGCAUUAUUGAGAAAAAGGA&ACCUUUU-CUUAAUAAUGAAAA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN60028_c0_g1_1747_TPlot.pdf
TRINITY_DN60028_c0_g1:1748	si_s816	TRINITY_DN60028_c0_g1	1737	1758	1748	-24.90	-16.80	0.674698795180723	9	3-8,1756-1751;9-18,1749-1740	1-2,1758-1757[UP5];x-x,1750-1750[BULt];19-21,1739-1737[UP3]	...((((((((((.((((((..&..))))))-))))))))))...	CGGCAUUAUUGAGAAAAAGGAA&UACCUUUU-CUUAAUAAUGAAA	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN60028_c0_g1_1748_TPlot.pdf
TRINITY_DN60028_c0_g1:344	si_s71	TRINITY_DN60028_c0_g1	333	353	344	-25.70	-17.40	0.67704280155642	6	3-14,351-340;16-21,338-333	1-2,353-352[UP5];15-15,339-339[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGGAAGAGAAAGAAAUAGAUU&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN60028_c0_g1_344_TPlot.pdf
TRINITY_DN60028_c0_g1:353	si_a542	TRINITY_DN60028_c0_g1	342	365	353	-30.70	-21.72	0.707491856677524	11	1-4,365-362;7-21,356-342	5-6,361-357[AILt]	(((((((((((((((.....((((&))))---..)))))))))))))))	AAGAAAUAGAUUGAAACGUGGGUC&GAUC---GGUUCAAUCUAUUUCUU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN60028_c0_g1_353_TPlot.pdf
TRINITY_DN6002_c1_g1:321	si_a664	TRINITY_DN6002_c1_g1	307	330	321	-29.60	-21.30	0.719594594594595	9.5	2-4,329-327;6-14,325-317;15-21,313-307	1-1,330-330[UP5];5-5,326-326[SIL];x-x,316-314[BULt]	(((((((...(((((((((.(((.&.))).)))))))))---)))))))	GUAGGGACUUGUCAGUAGGGGUUC&AAAUGCCUAUUGAU---UCCUUAU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN6002_c1_g1_321_TPlot.pdf
TRINITY_DN6002_c1_g1:371	si_s64	TRINITY_DN6002_c1_g1	360	380	371	-24.10	-16.50	0.684647302904564	12	3-15,378-366	1-2,380-379[UP5];16-21,365-360[UP3]	......(((((((((((((..&..)))))))))))))......	UAGCGUGGUGGGAGUUGCUUC&UUAGCAACUUCUAUUUUUUUU	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6002_c1_g1_371_TPlot.pdf
TRINITY_DN60030_c0_g1:364	si_a356	TRINITY_DN60030_c0_g1	353	373	364	-26.90	-17.80	0.661710037174721	13.5	7-21,367-353	1-6,373-368[UP5]	(((((((((((((((......&......)))))))))))))))	AUUCGAUCAAGAUGGCCGACU&UUAAUUCUAUUUUGAUCGGAU	4	0.999851405183079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN60030_c0_g1_364_TPlot.pdf
TRINITY_DN60030_c0_g1:537	si_a446	TRINITY_DN60030_c0_g1	524	546	537	-25.50	-17.20	0.674509803921569	12	3-12,544-535;13-19,532-526	1-2,546-545[UP5];x-x,534-533[BULt];20-21,525-524[UP3]	..(((((((..((((((((((..&..))))))))))--)))))))..	GCAGCAGCAUCGUUAUCUCGUUC&AUAUGAGAUAAU--UGUUGUUAU	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN60030_c0_g1_537_TPlot.pdf
TRINITY_DN60030_c0_g1:704	si_a64	TRINITY_DN60030_c0_g1	693	713	704	-29.40	-21.00	0.714285714285714	7	2-14,712-700;16-20,698-694	1-1,713-713[UP5];15-15,699-699[SIL];21-21,693-693[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	CGACGAGUUGAAGGAGGUGAU&CUCGCUUCUUUCAAAUUGUUU	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN60030_c0_g1_704_TPlot.pdf
TRINITY_DN60030_c0_g1:956	si_s666	TRINITY_DN60030_c0_g1	944	965	956	-31.30	-21.90	0.699680511182109	5.5	1-11,965-955;12-13,953-952;16-21,949-944	x-x,954-954[BULt];14-15,951-950[SIL]	((((((..((.(((((((((((&)))))))))))-))..))))))	UUCUGUUCUCGAAUUUGAUCCC&GGGAUCGAAUU-GAUUAUAGAA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN60030_c0_g1_956_TPlot.pdf
TRINITY_DN60030_c0_g1:957	si_s665	TRINITY_DN60030_c0_g1	945	966	957	-33.60	-22.20	0.660714285714286	6	1-12,966-955;13-14,953-952;17-21,949-945	x-x,954-954[BULt];15-16,951-950[SIL]	(((((..((.((((((((((((&))))))))))))-))..)))))	UCUGUUCUCGAAUUUGAUCCCU&GGGGAUCGAAUU-GAUUAUAGA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN60030_c0_g1_957_TPlot.pdf
TRINITY_DN60038_c0_g1:31	si_s68	TRINITY_DN60038_c0_g1	18	40	31	-23.10	-16.30	0.705627705627706	6.5	3-14,38-27;15-21,24-18	1-2,40-39[UP5];x-x,26-25[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	AAAGAAAUUAGGAAUAGAAGUAA&CAACUUCUAUUUUU--UUUCUUU	3	0.999999999790959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN60038_c0_g1_31_TPlot.pdf
TRINITY_DN60044_c0_g1:77	si_s75	TRINITY_DN60044_c0_g1	66	86	77	-24.00	-16.10	0.670833333333333	10.5	3-16,84-71;18-20,69-67	1-2,86-85[UP5];17-17,70-70[SIL];21-21,66-66[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	UGAGCGGAAAGAAGGGGAGCU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN60044_c0_g1_77_TPlot.pdf
TRINITY_DN60044_c0_g1:79	si_s73	TRINITY_DN60044_c0_g1	68	93	79	-24.00	-16.20	0.675	17	1-7,93-87;8-18,81-71	x-x,86-82[BULt];19-21,70-68[UP3]	...(((((((((((.....(((((((&)))))))-----)))))))))))...	AGCGGAAAGAAGGGGAGCUGAAUAGA&UCUAUUU-----UUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN60044_c0_g1_79_TPlot.pdf
TRINITY_DN60044_c0_g1:80	si_s72	TRINITY_DN60044_c0_g1	69	94	80	-24.10	-16.60	0.688796680497925	16.5	1-8,94-87;9-19,81-71	x-x,86-82[BULt];20-21,70-69[UP3]	..(((((((((((.....((((((((&))))))))-----)))))))))))..	GCGGAAAGAAGGGGAGCUGAAUAGAG&UUCUAUUU-----UUUUUCUUUCCUU	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN60044_c0_g1_80_TPlot.pdf
TRINITY_DN60046_c0_g1:798	si_a764	TRINITY_DN60046_c0_g1	787	809	798	-28.90	-18.80	0.650519031141869	13.5	3-6,807-804;7-20,801-788	1-2,809-808[UP5];x-x,803-802[BULt];21-21,787-787[UP3]	.((((((((((((((..((((..&..))))--)))))))))))))).	CUGGGUCGAUCGAAGCCGCCUUU&UUGGGU--UUUUGAUUGAUUCAA	4	0.999999999894778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN60046_c0_g1_798_TPlot.pdf
TRINITY_DN60046_c0_g1:894	si_a121	TRINITY_DN60046_c0_g1	883	904	894	-29.30	-19.70	0.672354948805461	8	1-7,904-898;8-16,896-888	x-x,897-897[BULt];17-21,887-883[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	ACCUCUGCUAUAAAUGCAAGCU&AGCUUGU-UUUAUAGCAAUAGU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN60046_c0_g1_894_TPlot.pdf
TRINITY_DN60047_c0_g1:2361	si_a139	TRINITY_DN60047_c0_g1	2350	2370	2361	-25.90	-17.30	0.667953667953668	6.5	1-10,2370-2361;12-15,2359-2356;17-21,2354-2350	11-11,2360-2360[SIL];16-16,2355-2355[SIL]	(((((.((((.((((((((((&)))))))))).)))).)))))	AAGCACCAACAGUUAGUUGCU&AGUAAUUAAUCGUUGUUGUUU	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN60047_c0_g1_2361_TPlot.pdf
TRINITY_DN60047_c0_g1:603	si_s490	TRINITY_DN60047_c0_g1	592	612	603	-17.80	-11.90	0.668539325842697	7	1-13,612-600;16-18,597-595	14-15,599-598[SIL];19-21,594-592[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	GUCUGUGCAUAUUUGAAUAGA&UUUAUUUAAAUAUAAACAAAA	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN60047_c0_g1_603_TPlot.pdf
TRINITY_DN6006_c0_g1:3646	si_a80	TRINITY_DN6006_c0_g1	3635	3655	3646	-22.10	-15.20	0.687782805429864	8	1-8,3655-3648;10-17,3646-3639	9-9,3647-3647[SIL];18-21,3638-3635[UP3]	....((((((((.((((((((&)))))))).))))))))....	UAUCCUUAAUAACGAAGAGCA&UGUUUUUCAUUAUUAAGAAAA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN6006_c0_g1_3646_TPlot.pdf
TRINITY_DN60073_c0_g1:957	si_s91	TRINITY_DN60073_c0_g1	946	970	957	-34.70	-22.80	0.657060518731988	12	2-8,969-963;9-17,958-950;19-20,948-947	1-1,970-970[UP5];x-x,962-959[BULt];18-18,949-949[SIL];21-21,946-946[UP3]	.((.(((((((((....(((((((.&.)))))))----))))))))).)).	CCCCAAGCGAAGAAAACGGAAGAAG&UUUCUUCU----UCUUCGCUUCGGA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN60073_c0_g1_957_TPlot.pdf
TRINITY_DN60082_c0_g1:1016	si_s514	TRINITY_DN60082_c0_g1	1005	1025	1016	-24.80	-17.30	0.69758064516129	7	1-4,1025-1022;6-19,1020-1007	5-5,1021-1021[SIL];20-21,1006-1005[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAUUGAGUUAAGAGUAAAGGA&UUCUAUAUUCUUAAUUCGAAA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN60082_c0_g1_1016_TPlot.pdf
TRINITY_DN60082_c0_g1:1020	si_s510	TRINITY_DN60082_c0_g1	1009	1029	1020	-24.80	-16.60	0.669354838709677	9.5	4-8,1026-1022;10-21,1020-1009	1-3,1029-1027[UP5];9-9,1021-1021[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAGUUAAGAGUAAAGGAUAAU&ACAAUUCUAUAUUCUUAAUUC	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN60082_c0_g1_1020_TPlot.pdf
TRINITY_DN60082_c0_g1:742	si_a413	TRINITY_DN60082_c0_g1	731	753	742	-18.40	-12.10	0.657608695652174	4.5	1-5,753-749;6-8,747-745;9-21,743-731	x-x,748-748[BULt];x-x,744-744[BULt]	(((((((((((((.(((.(((((&)))))-)))-)))))))))))))	AUGUUUAUUUAAAUUAUCAAACA&UGUUU-AUA-UUUAAAUAAAUAU	3	0.999997333137613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN60082_c0_g1_742_TPlot.pdf
TRINITY_DN6008_c2_g1:2356	si_a468	TRINITY_DN6008_c2_g1	2345	2364	2356	-21.30	-15.60	0.732394366197183	4	1-5,2364-2360;7-21,2359-2345	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	UAAUAAUAGUUGCAU-UUAUA&UAUAAUAUGUAAUUAUUGUUA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN6008_c2_g1_2356_TPlot.pdf
TRINITY_DN600_c0_g1:1047	si_a187	TRINITY_DN600_c0_g1	1035	1056	1047	-32.00	-21.10	0.659375	8.5	1-6,1056-1051;9-12,1048-1045;13-21,1043-1035	7-8,1050-1049[SIL];x-x,1044-1044[BULt]	(((((((((.((((..((((((&))))))..))))-)))))))))	GGUGAGCGGUGGAACAGUAUUA&UAAUAUCUUUCC-CUGUUCACU	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN600_c0_g1_1047_TPlot.pdf
TRINITY_DN60101_c0_g1:207	si_s79	TRINITY_DN60101_c0_g1	196	216	207	-26.20	-17.70	0.675572519083969	10.5	3-16,214-201	1-2,216-215[UP5];17-21,200-196[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUUCUGAAGGGGAAGAAGAUG&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN60101_c0_g1_207_TPlot.pdf
TRINITY_DN60112_c0_g1:3160	si_s532	TRINITY_DN60112_c0_g1	3148	3169	3160	-28.70	-19.60	0.682926829268293	8	3-15,3167-3155;16-19,3153-3150	1-2,3169-3168[UP5];x-x,3154-3154[BULt];20-21,3149-3148[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	UCAUCGAGAUCAAGGAUGAUCA&AAAUCAUUUUUGAUC-CGAUCA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN60112_c0_g1_3160_TPlot.pdf
TRINITY_DN60112_c0_g1:3162	si_s530	TRINITY_DN60112_c0_g1	3150	3173	3162	-29.50	-19.88	0.673898305084746	11	1-2,3173-3172;5-17,3167-3155;18-21,3153-3150	3-4,3171-3168[AILt];x-x,3154-3154[BULt]	((((.(((((((((((((....((&))--..)))))))))))))-))))	AUCGAGAUCAAGGAUGAUCAGGCG&CG--AAAUCAUUUUUGAUC-CGAU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s530_TRINITY_DN60112_c0_g1_3162_TPlot.pdf
TRINITY_DN60112_c0_g1:3529	si_s661	TRINITY_DN60112_c0_g1	3518	3538	3529	-35.40	-23.90	0.675141242937853	8	3-12,3536-3527;14-18,3525-3521	1-2,3538-3537[UP5];13-13,3526-3526[SIL];19-21,3520-3518[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	CAUUCAAUACGAUCCUCCGGA&AUCGGGGGAUCGAAUUGAUUA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN60112_c0_g1_3529_TPlot.pdf
TRINITY_DN60112_c0_g1:3891	si_a301	TRINITY_DN60112_c0_g1	3880	3900	3891	-27.80	-18.40	0.661870503597122	15.5	6-17,3895-3884	1-5,3900-3896[UP5];18-21,3883-3880[UP3]	....((((((((((((.....&.....))))))))))))....	CGCCCCGAGUGGAUCUGCCAG&AAAAAAGAUUCGCUUGGAUUU	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN60112_c0_g1_3891_TPlot.pdf
TRINITY_DN60112_c0_g1:3892	si_a300	TRINITY_DN60112_c0_g1	3881	3901	3892	-28.20	-18.40	0.652482269503546	16	7-18,3895-3884	1-6,3901-3896[UP5];19-21,3883-3881[UP3]	...((((((((((((......&......))))))))))))...	GCCCCGAGUGGAUCUGCCAGG&UAAAAAAGAUUCGCUUGGAUU	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN60112_c0_g1_3892_TPlot.pdf
TRINITY_DN60112_c0_g1:3894	si_a298	TRINITY_DN60112_c0_g1	3883	3903	3894	-28.10	-18.40	0.654804270462633	17.5	9-20,3895-3884	1-8,3903-3896[UP5];21-21,3883-3883[UP3]	.((((((((((((........&........)))))))))))).	CCCGAGUGGAUCUGCCAGGAG&UUUAAAAAAGAUUCGCUUGGA	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN60112_c0_g1_3894_TPlot.pdf
TRINITY_DN60112_c0_g1:3895	si_a297	TRINITY_DN60112_c0_g1	3884	3904	3895	-27.20	-18.44	0.677941176470588	13.5	1-4,3904-3901;10-21,3895-3884	5-9,3900-3896[SIL]	((((((((((((.....((((&)))).....))))))))))))	CCGAGUGGAUCUGCCAGGAGU&AUUUAAAAAAGAUUCGCUUGG	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN60112_c0_g1_3895_TPlot.pdf
TRINITY_DN60112_c0_g1:3948	si_a627	TRINITY_DN60112_c0_g1	3937	3957	3948	-29.50	-20.60	0.698305084745763	12	2-14,3956-3944	1-1,3957-3957[UP5];15-21,3943-3937[UP3]	.......(((((((((((((.&.))))))))))))).......	CAGCCGGCGGCAUGGUGCGCG&GGCGUAUUAUGUCGAUUUUUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN60112_c0_g1_3948_TPlot.pdf
TRINITY_DN60112_c0_g1:3950	si_a625	TRINITY_DN60112_c0_g1	3939	3959	3950	-30.60	-20.60	0.673202614379085	13.5	4-16,3956-3944	1-3,3959-3957[UP5];17-21,3943-3939[UP3]	.....(((((((((((((...&...))))))))))))).....	GCCGGCGGCAUGGUGCGCGAC&UAGGCGUAUUAUGUCGAUUUU	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN60112_c0_g1_3950_TPlot.pdf
TRINITY_DN60114_c0_g1:14	si_a234	TRINITY_DN60114_c0_g1	3	23	14	-31.30	-20.70	0.661341853035144	7.5	1-10,23-14;12-19,12-5	11-11,13-13[SIL];20-21,4-3[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	UAGAUCGGAUAGAUUGUGGGA&UUCUAUAAUCAAUUCGAUCCC	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a234_TRINITY_DN60114_c0_g1_14_TPlot.pdf
TRINITY_DN6011_c0_g4:916	si_s297	TRINITY_DN6011_c0_g4	905	925	916	-29.80	-19.98	0.670469798657718	10	1-8,925-918;12-18,914-908	9-11,917-915[SIL];19-21,907-905[UP3]	...(((((((...((((((((&))))))))...)))))))...	AAGUUUCGCACAACCAGUCGA&UCGAUUGGAAUUGCGAAAAUU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN6011_c0_g4_916_TPlot.pdf
TRINITY_DN6011_c0_g4:917	si_s296	TRINITY_DN6011_c0_g4	906	926	917	-31.60	-21.28	0.673417721518987	9.5	1-9,926-918;13-19,914-908	10-12,917-915[SIL];20-21,907-906[UP3]	..(((((((...(((((((((&)))))))))...)))))))..	AGUUUCGCACAACCAGUCGAU&GUCGAUUGGAAUUGCGAAAAU	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN6011_c0_g4_917_TPlot.pdf
TRINITY_DN6011_c0_g4:920	si_s293	TRINITY_DN6011_c0_g4	909	929	920	-34.30	-22.68	0.661224489795918	6	2-12,928-918;16-21,914-909	1-1,929-929[UP5];13-15,917-915[SIL]	((((((...(((((((((((.&.)))))))))))...))))))	UUCGCACAACCAGUCGAUUAA&CUAGUCGAUUGGAAUUGCGAA	1	0.0429105899911557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN6011_c0_g4_920_TPlot.pdf
TRINITY_DN60120_c0_g1:1315	si_a23	TRINITY_DN60120_c0_g1	1294	1324	1315	-22.80	-15.10	0.662280701754386	11.5	2-14,1323-1311;15-21,1300-1294	1-1,1324-1324[UP5];x-x,1310-1301[BULt]	(((((((..........(((((((((((((.&.)))))))))))))----------)))))))	UCUUAGAAUUGAAUUUGGCUAAAAAUAAAUU&UAUUUAUUUUUAGU----------UCUAAGA	4	0.999998788870254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN60120_c0_g1_1315_TPlot.pdf
TRINITY_DN60122_c0_g1:1002	si_a564	TRINITY_DN60122_c0_g1	992	1011	1002	-37.60	-26.40	0.702127659574468	3.5	1-14,1011-998;16-18,996-994;20-21,993-992	15-15,997-997[SIL];19-19,x-x[BULq]	((-(((.((((((((((((((&)))))))))))))).))).))	AC-UGCUAUUCAUGGGGAGAU&AUCUCCCCGUGAAUCGUAUGU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN60122_c0_g1_1002_TPlot.pdf
TRINITY_DN60122_c0_g1:1426	si_s857	TRINITY_DN60122_c0_g1	1412	1435	1426	-42.30	-30.00	0.709219858156028	8.5	3-15,1433-1421;16-17,1418-1417;18-21,1415-1412	1-2,1435-1434[UP5];x-x,1420-1419[BULt];x-x,1416-1416[BULt]	((((.((..(((((((((((((..&..)))))))))))))--))-))))	GCCGCGUUCAGGUCUGGGGGUCCC&UCGACUCCUAGACCU--AC-CGGU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s857_TRINITY_DN60122_c0_g1_1426_TPlot.pdf
TRINITY_DN60122_c0_g1:1449	si_s624	TRINITY_DN60122_c0_g1	1437	1461	1449	-37.90	-26.20	0.691292875989446	10	1-6,1461-1456;7-10,1452-1449;12-18,1447-1441;19-21,1439-1437	x-x,1455-1453[BULt];11-11,1448-1448[SIL];x-x,1440-1440[BULt]	(((.(((((((.((((...((((((&))))))---)))).)))))))-)))	GCCAUGCGAGACGAUCUCGGCUUGG&CCAAGC---GAUCUUUUCGUA-GGC	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s624_TRINITY_DN60122_c0_g1_1449_TPlot.pdf
TRINITY_DN60122_c0_g1:1533	si_s291	TRINITY_DN60122_c0_g1	1513	1542	1533	-38.10	-26.30	0.690288713910761	16	1-11,1542-1532;12-15,1526-1523;16-21,1518-1513	x-x,1531-1527[BULt];x-x,1522-1519[BULt]	((((((....((((.....(((((((((((&)))))))))))-----))))----))))))	UGCAGUGAUCUCCAGCCGAAUCGGCUAGGC&GCCUAGUCGAU-----UGGA----AUUGCG	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s291_TRINITY_DN60122_c0_g1_1533_TPlot.pdf
TRINITY_DN60122_c0_g1:1534	si_s290	TRINITY_DN60122_c0_g1	1514	1543	1534	-38.10	-25.90	0.679790026246719	16.5	2-12,1542-1532;13-16,1526-1523;17-21,1518-1514	1-1,1543-1543[UP5];x-x,1531-1527[BULt];x-x,1522-1519[BULt]	(((((....((((.....(((((((((((.&.)))))))))))-----))))----)))))	GCAGUGAUCUCCAGCCGAAUCGGCUAGGCU&CGCCUAGUCGAU-----UGGA----AUUGC	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN60122_c0_g1_1534_TPlot.pdf
TRINITY_DN60122_c0_g1:1536	si_s288	TRINITY_DN60122_c0_g1	1524	1545	1536	-35.10	-23.20	0.660968660968661	11	4-15,1542-1531;16-17,1529-1528	1-3,1545-1543[UP5];x-x,1530-1530[BULt];18-21,1527-1524[UP3]	....((.((((((((((((...&...))))))))))))-))....	CCAGCCGAAUCGGCUAGGCUUC&UACGCCUAGUCGAUU-GGAAUU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN60122_c0_g1_1536_TPlot.pdf
TRINITY_DN60122_c0_g1:1538	si_s286	TRINITY_DN60122_c0_g1	1526	1547	1538	-35.20	-23.20	0.659090909090909	13	6-17,1542-1531;18-19,1529-1528	1-5,1547-1543[UP5];x-x,1530-1530[BULt];20-21,1527-1526[UP3]	..((.((((((((((((.....&.....))))))))))))-))..	AGCCGAAUCGGCUAGGCUUCCU&AAUACGCCUAGUCGAUU-GGAA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN60122_c0_g1_1538_TPlot.pdf
TRINITY_DN60122_c0_g1:215	si_s303	TRINITY_DN60122_c0_g1	204	226	215	-34.00	-22.20	0.652941176470588	16	1-8,226-219;15-21,210-204	9-14,218-211[AILt]	(((((((........((((((((&))))))))--......)))))))	GGACGGGUCAGAUGAGCAGUUCC&GGAAUUGC--GAAAAUUCUGUCC	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s303_TRINITY_DN60122_c0_g1_215_TPlot.pdf
TRINITY_DN60122_c0_g1:492	si_s540	TRINITY_DN60122_c0_g1	480	501	492	-29.10	-19.60	0.673539518900344	7.5	1-13,501-489;16-17,486-485;19-20,482-481	14-15,488-487[SIL];18-18,484-483[AILt];21-21,480-480[UP3]	.((..((..(((((((((((((&)))))))))))))..))-.)).	CUCGGGUGCUGAUCGGGUCGAA&UUUGAUCCGAUCAAAAU-AGAA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s540_TRINITY_DN60122_c0_g1_492_TPlot.pdf
TRINITY_DN60122_c0_g1:495	si_s537	TRINITY_DN60122_c0_g1	484	504	495	-26.40	-21.10	0.799242424242424	8	2-16,503-489	1-1,504-504[UP5];17-21,488-484[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GGUGCUGAUCGGGUCGAAAAG&AUUUUUGAUCCGAUCAAAAUA	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN60122_c0_g1_495_TPlot.pdf
TRINITY_DN60122_c0_g1:496	si_s536	TRINITY_DN60122_c0_g1	485	505	496	-27.70	-21.10	0.76173285198556	9	3-17,503-489	1-2,505-504[UP5];18-21,488-485[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUGCUGAUCGGGUCGAAAAGA&CAUUUUUGAUCCGAUCAAAAU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN60122_c0_g1_496_TPlot.pdf
TRINITY_DN60122_c0_g1:497	si_s535	TRINITY_DN60122_c0_g1	486	505	497	-28.60	-21.80	0.762237762237762	7	1-2,505-504;4-18,503-489	3-3,x-x[BULq];19-21,488-486[UP3]	...(((((((((((((((-((&)).)))))))))))))))...	UGCUGAUCGGGUCGAAAA-GA&UCAUUUUUGAUCCGAUCAAAA	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN60122_c0_g1_497_TPlot.pdf
TRINITY_DN60122_c0_g1:499	si_s533	TRINITY_DN60122_c0_g1	488	507	499	-28.80	-21.80	0.756944444444444	7.5	3-4,505-504;6-20,503-489	1-2,507-506[UP5];5-5,x-x[BULq];21-21,488-488[UP3]	.(((((((((((((((-((..&..)).))))))))))))))).	CUGAUCGGGUCGAAAA-GAGU&AAUCAUUUUUGAUCCGAUCAA	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN60122_c0_g1_499_TPlot.pdf
TRINITY_DN60122_c0_g1:500	si_s532	TRINITY_DN60122_c0_g1	489	508	500	-28.70	-21.50	0.749128919860627	8.5	4-5,505-504;7-21,503-489	1-3,508-506[UP5];6-6,x-x[BULq]	(((((((((((((((-((...&...)).)))))))))))))))	UGAUCGGGUCGAAAA-GAGUG&AAAUCAUUUUUGAUCCGAUCA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN60122_c0_g1_500_TPlot.pdf
TRINITY_DN60122_c0_g1:501	si_s531	TRINITY_DN60122_c0_g1	490	509	501	-30.00	-20.00	0.666666666666667	10.5	5-6,505-504;8-21,503-490	1-4,509-506[UP5];7-7,x-x[BULq]	((((((((((((((-((....&....)).))))))))))))))	GAUCGGGUCGAAAA-GAGUGC&GAAAUCAUUUUUGAUCCGAUC	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN60122_c0_g1_501_TPlot.pdf
TRINITY_DN60133_c0_g1:14	si_s68	TRINITY_DN60133_c0_g1	3	23	14	-23.10	-15.50	0.670995670995671	8	3-7,21-17;9-20,15-4	1-2,23-22[UP5];8-8,16-16[SIL];21-21,3-3[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UAAGAAGAGAAGUUGAAGUCA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN60133_c0_g1_14_TPlot.pdf
TRINITY_DN60133_c0_g1:39	si_s885	TRINITY_DN60133_c0_g1	28	48	39	-26.20	-18.50	0.706106870229008	4	2-19,47-30	1-1,48-48[UP5];20-21,29-28[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAGAAGUCUAUUUAUUUUUAA&CUAAAAAUAAAUAGGCUUUCU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s885_TRINITY_DN60133_c0_g1_39_TPlot.pdf
TRINITY_DN60133_c0_g1:40	si_s884	TRINITY_DN60133_c0_g1	29	49	40	-26.30	-18.50	0.703422053231939	5	3-20,47-30	1-2,49-48[UP5];21-21,29-29[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGAAGUCUAUUUAUUUUUAAU&ACUAAAAAUAAAUAGGCUUUC	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s884_TRINITY_DN60133_c0_g1_40_TPlot.pdf
TRINITY_DN60133_c0_g1:41	si_s883	TRINITY_DN60133_c0_g1	30	50	41	-24.30	-18.30	0.753086419753086	6	4-21,47-30	1-3,50-48[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGUCUAUUUAUUUUUAAUG&AACUAAAAAUAAAUAGGCUUU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s883_TRINITY_DN60133_c0_g1_41_TPlot.pdf
TRINITY_DN60135_c0_g1:1055	si_a319	TRINITY_DN60135_c0_g1	1044	1064	1055	-22.40	-14.90	0.665178571428572	11	6-21,1059-1044	1-5,1064-1060[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUAGGAAAAUUAUGGCUUUA&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN60135_c0_g1_1055_TPlot.pdf
TRINITY_DN60136_c0_g1:2385	si_a292	TRINITY_DN60136_c0_g1	2368	2394	2385	-26.70	-17.70	0.662921348314607	18	4-12,2391-2383;13-21,2376-2368	1-3,2394-2392[UP5];x-x,2382-2377[BULt]	(((((((((......(((((((((...&...)))))))))------)))))))))	CGAAUCUUUUAUUGCUUUGAAUCCUCC&CUUGGAUUUAAA------AAAGAUUCG	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a292_TRINITY_DN60136_c0_g1_2385_TPlot.pdf
TRINITY_DN60136_c0_g1:2497	si_s690	TRINITY_DN60136_c0_g1	2485	2506	2497	-26.70	-18.20	0.681647940074906	7	2-15,2505-2492;18-21,2488-2485	1-1,2506-2506[UP5];16-17,2491-2489[AILt]	((((...((((((((((((((.&.))))))))))))))-..))))	UGAAGCAGAUUGAUUAAGCUCG&UGAGUUUAAUUAGUC-GAUUUA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN60136_c0_g1_2497_TPlot.pdf
TRINITY_DN60136_c0_g1:2811	si_s627	TRINITY_DN60136_c0_g1	2799	2820	2811	-36.10	-23.80	0.659279778393352	7.5	1-13,2820-2808;16-21,2804-2799	14-15,2807-2805[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	GAUGCCACGUGAGAGGAUUGCU&AGCGAUCUUUUCG-UAGGCGUU	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN60136_c0_g1_2811_TPlot.pdf
TRINITY_DN60136_c0_g1:3232	si_a664	TRINITY_DN60136_c0_g1	3211	3241	3232	-29.60	-20.30	0.685810810810811	15	2-14,3240-3228;15-21,3217-3211	1-1,3241-3241[UP5];x-x,3227-3218[BULt]	(((((((..........(((((((((((((.&.)))))))))))))----------)))))))	AUGGGGGAGCUCAUUCAGUCGAUGGGCAUUC&AAAUGCCUAUUGAU----------UCCUUAU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN60136_c0_g1_3232_TPlot.pdf
TRINITY_DN60136_c0_g1:3239	si_a657	TRINITY_DN60136_c0_g1	3228	3254	3239	-33.80	-22.10	0.653846153846154	15.5	1-4,3254-3251;6-8,3248-3246;9-21,3240-3228	5-5,3250-3249[AILt];x-x,3245-3241[BULt]	(((((((((((((.....(((..((((&))))-.)))-----)))))))))))))	GUCGAUGGGCAUUCCAUCUCCAGGAUA&UAUC-GGGA-----AAUGCCUAUUGAU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN60136_c0_g1_3239_TPlot.pdf
TRINITY_DN6013_c0_g1:2986	si_s316	TRINITY_DN6013_c0_g1	2975	2995	2986	-31.50	-21.10	0.66984126984127	11.5	3-16,2993-2980	1-2,2995-2994[UP5];17-21,2979-2975[UP3]	.....((((((((((((((..&..)))))))))))))).....	UCUUCGGCGAGGAGGGCAGUG&UUCUGUCCUUCUUGUUACAAA	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN6013_c0_g1_2986_TPlot.pdf
TRINITY_DN6013_c0_g1:2987	si_s315	TRINITY_DN6013_c0_g1	2976	2996	2987	-31.60	-21.10	0.667721518987342	12.5	4-17,2993-2980	1-3,2996-2994[UP5];18-21,2979-2976[UP3]	....((((((((((((((...&...))))))))))))))....	CUUCGGCGAGGAGGGCAGUGA&AUUCUGUCCUUCUUGUUACAA	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN6013_c0_g1_2987_TPlot.pdf
TRINITY_DN6013_c0_g1:2989	si_s313	TRINITY_DN6013_c0_g1	2978	2998	2989	-30.80	-21.10	0.685064935064935	14	6-19,2993-2980	1-5,2998-2994[UP5];20-21,2979-2978[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGGCGAGGAGGGCAGUGAGU&AAAUUCUGUCCUUCUUGUUAC	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN6013_c0_g1_2989_TPlot.pdf
TRINITY_DN6013_c0_g1:2990	si_s312	TRINITY_DN6013_c0_g1	2979	2999	2990	-29.00	-21.10	0.727586206896552	15	7-20,2993-2980	1-6,2999-2994[UP5];21-21,2979-2979[UP3]	.((((((((((((((......&......)))))))))))))).	CGGCGAGGAGGGCAGUGAGUC&AAAAUUCUGUCCUUCUUGUUA	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN6013_c0_g1_2990_TPlot.pdf
TRINITY_DN6013_c0_g1:3067	si_a499	TRINITY_DN6013_c0_g1	3056	3075	3067	-35.20	-24.10	0.684659090909091	6	1-9,3075-3067;11-13,3066-3064;16-21,3061-3056	10-10,x-x[BULq];14-15,3063-3062[SIL]	((((((..(((-(((((((((&))))))))).)))..))))))	CCAAGGCCGAC-AAAGACGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.999999807106365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN6013_c0_g1_3067_TPlot.pdf
TRINITY_DN60149_c0_g1:42	si_s777	TRINITY_DN60149_c0_g1	31	51	42	-26.60	-18.40	0.691729323308271	7	1-14,51-38;17-21,35-31	15-16,37-36[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	UUUGUAGUGUGGUAGUGGUAA&UUACUAUUGCUAUAAAACAAG	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN60149_c0_g1_42_TPlot.pdf
TRINITY_DN6014_c0_g1:2513	si_a410	TRINITY_DN6014_c0_g1	2502	2522	2513	-17.80	-13.00	0.730337078651685	9.5	1-15,2522-2508	16-21,2507-2502[UP3]	......(((((((((((((((&)))))))))))))))......	AGAAGGUGAAUAUAGGCAAGA&UUUUGUUUAUAUUUAAAUAAA	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6014_c0_g1_2513_TPlot.pdf
TRINITY_DN6014_c0_g1:2514	si_a409	TRINITY_DN6014_c0_g1	2503	2523	2514	-19.50	-13.00	0.666666666666667	9.5	2-16,2522-2508	1-1,2523-2523[UP5];17-21,2507-2503[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAAGGUGAAUAUAGGCAAGAA&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6014_c0_g1_2514_TPlot.pdf
TRINITY_DN6014_c0_g1:2843	si_a353	TRINITY_DN6014_c0_g1	2829	2852	2843	-24.00	-15.70	0.654166666666667	5.5	2-15,2851-2838;16-16,2834-2834;18-21,2832-2829	1-1,2852-2852[UP5];x-x,2837-2835[BULt];17-17,2833-2833[SIL]	((((.(...((((((((((((((.&.))))))))))))))---).))))	CGAUGAAAAGAAUAGAAUUAAUAA&AUAUUAAUUCUAUUU---UGAUCG	3	0.999850180535883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN6014_c0_g1_2843_TPlot.pdf
TRINITY_DN6014_c0_g1:2844	si_a352	TRINITY_DN6014_c0_g1	2833	2853	2844	-22.50	-14.90	0.662222222222222	5.5	3-17,2851-2837;20-21,2834-2833	1-2,2853-2852[UP5];18-19,2836-2835[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	GAAAAGAAUAGAAUUAAUAAA&AAUAUUAAUUCUAUUUUGAUC	2	0.998182325710981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN6014_c0_g1_2844_TPlot.pdf
TRINITY_DN6014_c0_g1:2845	si_a351	TRINITY_DN6014_c0_g1	2834	2854	2845	-20.50	-14.00	0.682926829268293	8.5	4-18,2851-2837	1-3,2854-2852[UP5];19-21,2836-2834[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAAGAAUAGAAUUAAUAAAG&AAAUAUUAAUUCUAUUUUGAU	2	0.995762828526261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN6014_c0_g1_2845_TPlot.pdf
TRINITY_DN6014_c0_g1:2846	si_a350	TRINITY_DN6014_c0_g1	2835	2855	2846	-20.30	-14.00	0.689655172413793	9.5	5-19,2851-2837	1-4,2855-2852[UP5];20-21,2836-2835[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAGAAUAGAAUUAAUAAAGA&AAAAUAUUAAUUCUAUUUUGA	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN6014_c0_g1_2846_TPlot.pdf
TRINITY_DN6014_c0_g1:2847	si_a349	TRINITY_DN6014_c0_g1	2836	2856	2847	-21.30	-14.00	0.657276995305164	10.5	6-20,2851-2837	1-5,2856-2852[UP5];21-21,2836-2836[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGAAUAGAAUUAAUAAAGAA&GAAAAUAUUAAUUCUAUUUUG	2	0.989223615669991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN6014_c0_g1_2847_TPlot.pdf
TRINITY_DN6015_c0_g2:232	si_a468	TRINITY_DN6015_c0_g2	221	241	232	-21.30	-14.00	0.657276995305164	5.5	2-16,240-226;18-20,224-222	1-1,241-241[UP5];17-17,225-225[SIL];21-21,221-221[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AAACCGUGGUUAUAUAUUAUU&UAUAAUAUGUAAUUAUUGUUA	2	0.998414895741201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN6015_c0_g2_232_TPlot.pdf
TRINITY_DN6015_c0_g2:36	si_a711	TRINITY_DN6015_c0_g2	25	47	36	-27.90	-18.30	0.655913978494624	10.5	1-6,47-42;8-10,38-36;12-21,34-25	7-7,41-39[AILt];11-11,35-35[SIL]	((((((((((.(((...((((((&))))))--.))).))))))))))	AGUGACGAUUUUUUAUAGGGGUG&CAUUCC--AAAAUAAUCGUUACU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN6015_c0_g2_36_TPlot.pdf
TRINITY_DN60165_c0_g1:386	si_a222	TRINITY_DN60165_c0_g1	375	396	386	-25.20	-16.50	0.654761904761905	6	1-5,396-392;7-8,390-389;9-21,387-375	6-6,391-391[SIL];x-x,388-388[BULt]	(((((((((((((.((.(((((&))))).))-)))))))))))))	GUUAUGGAAACAUCGACUUUGA&UUAAACUC-AUGUUUCUAUAAU	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN60165_c0_g1_386_TPlot.pdf
TRINITY_DN60165_c0_g1:657	si_s93	TRINITY_DN60165_c0_g1	645	668	657	-34.80	-22.80	0.655172413793104	11	1-6,668-663;7-10,660-657;11-18,655-648	x-x,662-661[BULt];x-x,656-656[BULt];19-21,647-645[UP3]	...((((((((.((((..((((((&))))))--))))-))))))))...	AUCCCGAAGUGAAAGAACGGAAGA&UCUUCU--UCUU-CGCUUCGGAUU	2	0.999999991056292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN60165_c0_g1_657_TPlot.pdf
TRINITY_DN60165_c0_g1:658	si_s92	TRINITY_DN60165_c0_g1	646	669	658	-34.90	-23.70	0.679083094555874	9.5	1-7,669-663;8-11,660-657;12-19,655-648	x-x,662-661[BULt];x-x,656-656[BULt];20-21,647-646[UP3]	..((((((((.((((..(((((((&)))))))--))))-))))))))..	UCCCGAAGUGAAAGAACGGAAGAA&UUCUUCU--UCUU-CGCUUCGGAU	2	0.999996439886115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN60165_c0_g1_658_TPlot.pdf
TRINITY_DN60165_c0_g1:659	si_s91	TRINITY_DN60165_c0_g1	647	670	659	-34.70	-24.60	0.708933717579251	8.5	1-8,670-663;9-12,660-657;13-20,655-648	x-x,662-661[BULt];x-x,656-656[BULt];21-21,647-647[UP3]	.((((((((.((((..((((((((&))))))))--))))-)))))))).	CCCGAAGUGAAAGAACGGAAGAAA&UUUCUUCU--UCUU-CGCUUCGGA	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN60165_c0_g1_659_TPlot.pdf
TRINITY_DN60165_c0_g1:660	si_s90	TRINITY_DN60165_c0_g1	648	671	660	-35.30	-26.10	0.739376770538244	6.5	1-9,671-663;10-13,660-657;14-21,655-648	x-x,662-661[BULt];x-x,656-656[BULt]	((((((((.((((..(((((((((&)))))))))--))))-))))))))	CCGAAGUGAAAGAACGGAAGAAAG&CUUUCUUCU--UCUU-CGCUUCGG	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN60165_c0_g1_660_TPlot.pdf
TRINITY_DN60165_c0_g1:663	si_s89	TRINITY_DN60165_c0_g1	649	672	663	-35.30	-23.00	0.651558073654391	7.5	2-10,671-663;11-14,660-657;15-21,655-649	1-1,672-672[UP5];x-x,662-661[BULt];x-x,656-656[BULt]	(((((((.((((..(((((((((.&.)))))))))--))))-)))))))	CGAAGUGAAAGAACGGAAGAAAGC&CCUUUCUUCU--UCUU-CGCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN60165_c0_g1_663_TPlot.pdf
TRINITY_DN60166_c0_g1:1020	si_s437	TRINITY_DN60166_c0_g1	1009	1029	1020	-19.70	-13.10	0.66497461928934	9.5	3-11,1027-1019;14-20,1016-1010	1-2,1029-1028[UP5];12-13,1018-1017[SIL];21-21,1009-1009[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	GUGUAUAUUUUAUGUGGUUCU&AUAAUUACAUAUUAUAUAUAA	2	0.999060199882597	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN60166_c0_g1_1020_TPlot.pdf
TRINITY_DN60166_c0_g1:1022	si_s435	TRINITY_DN60166_c0_g1	1011	1033	1022	-20.90	-13.90	0.665071770334928	9.5	1-5,1033-1029;6-13,1026-1019;16-21,1016-1011	x-x,1028-1027[BULt];14-15,1018-1017[SIL]	((((((..((((((((..(((((&)))))--))))))))..))))))	GUAUAUUUUAUGUGGUUCUGUUG&CAAUA--AUUACAUAUUAUAUAU	2	0.986684328710919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN60166_c0_g1_1022_TPlot.pdf
TRINITY_DN60166_c0_g1:1066	si_a123	TRINITY_DN60166_c0_g1	1055	1075	1066	-26.60	-18.10	0.680451127819549	7	1-3,1075-1073;5-17,1071-1059	4-4,1072-1072[SIL];18-21,1058-1055[UP3]	....(((((((((((((.(((&))).)))))))))))))....	CUGAUAUUGCUAUAAAAGGAG&CUUGUUUUAUAGCAAUAGUAA	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN60166_c0_g1_1066_TPlot.pdf
TRINITY_DN60166_c0_g1:1067	si_a122	TRINITY_DN60166_c0_g1	1056	1076	1067	-29.00	-22.00	0.758620689655172	6	1-4,1076-1073;6-18,1071-1059	5-5,1072-1072[SIL];19-21,1058-1056[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UGAUAUUGCUAUAAAAGGAGC&GCUUGUUUUAUAGCAAUAGUA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a122_TRINITY_DN60166_c0_g1_1067_TPlot.pdf
TRINITY_DN60166_c0_g1:1073	si_a116	TRINITY_DN60166_c0_g1	1062	1082	1073	-31.10	-20.30	0.652733118971061	12	6-10,1077-1073;12-21,1071-1062	1-5,1082-1078[UP5];11-11,1072-1072[SIL]	((((((((((.(((((.....&.....))))).))))))))))	UGCUAUAAAAGGAGCUAGAAA&AUACGAGCUUGUUUUAUAGCA	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN60166_c0_g1_1073_TPlot.pdf
TRINITY_DN60168_c0_g1:695	si_s88	TRINITY_DN60168_c0_g1	678	704	695	-34.80	-23.40	0.672413793103448	12.5	1-15,704-690;16-18,683-681	x-x,689-684[BULt];19-21,680-678[UP3]	...(((......(((((((((((((((&)))))))))))))))------)))...	CAUGCGCUUUUCGAGAGGAAGGAGGGA&UCCUUUCUUCUUCUU------CGCUUC	4	0.99999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN60168_c0_g1_695_TPlot.pdf
TRINITY_DN60176_c0_g1:156	si_s889	TRINITY_DN60176_c0_g1	145	165	156	-28.80	-21.20	0.736111111111111	11	6-10,160-156;12-21,154-145	1-5,165-161[UP5];11-11,155-155[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GAAGAGAAAGGCUAUUGGAGA&AAAUAAAUAGGCUUUCUCUUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN60176_c0_g1_156_TPlot.pdf
TRINITY_DN60178_c0_g1:955	si_a172	TRINITY_DN60178_c0_g1	944	964	955	-31.90	-22.40	0.702194357366771	9	2-14,963-951	1-1,964-964[UP5];15-21,950-944[UP3]	.......(((((((((((((.&.))))))))))))).......	GAAGAGGCUAGAUGGGUGAAG&AUUCACCCGUCUAGAUAAUAU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN60178_c0_g1_955_TPlot.pdf
TRINITY_DN60178_c0_g1:956	si_a171	TRINITY_DN60178_c0_g1	945	965	956	-32.10	-22.40	0.697819314641745	10	3-15,963-951	1-2,965-964[UP5];16-21,950-945[UP3]	......(((((((((((((..&..)))))))))))))......	AAGAGGCUAGAUGGGUGAAGA&UAUUCACCCGUCUAGAUAAUA	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN60178_c0_g1_956_TPlot.pdf
TRINITY_DN60186_c0_g1:2559	si_a638	TRINITY_DN60186_c0_g1	2548	2565	2559	-24.40	-16.20	0.663934426229508	10	1-6,2565-2560;10-19,2559-2550	7-9,x-x[BULq];20-21,2549-2548[UP3]	..((((((((((---((((((&))))))...))))))))))..	AUUGUUGCUCAA---GAUCGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999999306351614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN60186_c0_g1_2559_TPlot.pdf
TRINITY_DN60186_c0_g1:2571	si_s622	TRINITY_DN60186_c0_g1	2560	2580	2571	-34.20	-23.50	0.687134502923977	7.5	2-9,2579-2572;11-18,2570-2563	1-1,2580-2580[UP5];10-10,2571-2571[SIL];19-21,2562-2560[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	GAUCGAGAAGGCCGCUUGGAA&AUCCAAGCGAUCUUUUCGUAG	2	0.601885255954876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN60186_c0_g1_2571_TPlot.pdf
TRINITY_DN60187_c0_g1:106	si_a854	TRINITY_DN60187_c0_g1	95	115	106	-25.00	-16.76	0.6704	8.5	1-7,115-109;12-21,104-95	8-11,108-105[SIL]	((((((((((....(((((((&)))))))....))))))))))	UGAUAAUUGGUACACAAGUUA&UAACUUGAAAUCCAAUUAUUA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN60187_c0_g1_106_TPlot.pdf
TRINITY_DN60188_c0_g1:1033	si_a850	TRINITY_DN60188_c0_g1	1022	1043	1033	-29.00	-19.00	0.655172413793103	8.5	1-9,1043-1035;10-13,1033-1030;15-18,1028-1025	x-x,1034-1034[BULt];14-14,1029-1029[SIL];19-21,1024-1022[UP3]	...((((.((((.(((((((((&)))))))))-)))).))))...	GACUGGACUUCAUGGUUGGCAG&UUGCUAACU-UGAAAUCCAAUU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN60188_c0_g1_1033_TPlot.pdf
TRINITY_DN60188_c0_g1:1035	si_a849	TRINITY_DN60188_c0_g1	1023	1044	1035	-30.70	-22.40	0.729641693811075	8	1-10,1044-1035;11-14,1033-1030;16-19,1028-1025	x-x,1034-1034[BULt];15-15,1029-1029[SIL];20-21,1024-1023[UP3]	..((((.((((.((((((((((&))))))))))-)))).))))..	ACUGGACUUCAUGGUUGGCAGC&GUUGCUAACU-UGAAAUCCAAU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a849_TRINITY_DN60188_c0_g1_1035_TPlot.pdf
TRINITY_DN60188_c0_g1:1036	si_a848	TRINITY_DN60188_c0_g1	1024	1045	1036	-31.30	-23.50	0.750798722044728	7	1-11,1045-1035;12-15,1033-1030;17-20,1028-1025	x-x,1034-1034[BULt];16-16,1029-1029[SIL];21-21,1024-1024[UP3]	.((((.((((.(((((((((((&)))))))))))-)))).)))).	CUGGACUUCAUGGUUGGCAGCU&AGUUGCUAACU-UGAAAUCCAA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN60188_c0_g1_1036_TPlot.pdf
TRINITY_DN60188_c0_g1:1037	si_a847	TRINITY_DN60188_c0_g1	1025	1046	1037	-31.20	-24.10	0.772435897435897	6	1-12,1046-1035;13-16,1033-1030;18-21,1028-1025	x-x,1034-1034[BULt];17-17,1029-1029[SIL]	((((.((((.((((((((((((&))))))))))))-)))).))))	UGGACUUCAUGGUUGGCAGCUU&AAGUUGCUAACU-UGAAAUCCA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a847_TRINITY_DN60188_c0_g1_1037_TPlot.pdf
TRINITY_DN60188_c0_g1:1494	si_s90	TRINITY_DN60188_c0_g1	1481	1503	1494	-35.30	-23.20	0.657223796033994	8	1-13,1503-1491;15-20,1487-1482	14-14,1490-1488[AILt];21-21,1481-1481[UP3]	.((((((...(((((((((((((&)))))))))))))--.)))))).	UCGGAGUCUUAGGAAGAGGAAGG&CUUUCUUCUUCUU--CGCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN60188_c0_g1_1494_TPlot.pdf
TRINITY_DN60188_c0_g1:1495	si_s89	TRINITY_DN60188_c0_g1	1482	1504	1495	-35.30	-25.50	0.722379603399434	6.5	1-14,1504-1491;16-21,1487-1482	15-15,1490-1488[AILt]	((((((...((((((((((((((&))))))))))))))--.))))))	CGGAGUCUUAGGAAGAGGAAGGG&CCUUUCUUCUUCUU--CGCUUCG	2	0.996613268617216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN60188_c0_g1_1495_TPlot.pdf
TRINITY_DN60188_c0_g1:1496	si_s88	TRINITY_DN60188_c0_g1	1483	1505	1496	-34.80	-23.90	0.686781609195402	7	1-15,1505-1491;17-21,1487-1483	16-16,1490-1488[AILt]	(((((...(((((((((((((((&)))))))))))))))--.)))))	GGAGUCUUAGGAAGAGGAAGGGG&UCCUUUCUUCUUCUU--CGCUUC	3	0.999999999839329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN60188_c0_g1_1496_TPlot.pdf
TRINITY_DN60188_c0_g1:1497	si_s87	TRINITY_DN60188_c0_g1	1484	1506	1497	-32.90	-21.60	0.656534954407295	8.5	2-16,1505-1491;18-21,1487-1484	1-1,1506-1506[UP5];17-17,1490-1488[AILt]	((((...(((((((((((((((.&.)))))))))))))))--.))))	GAGUCUUAGGAAGAGGAAGGGGC&UUCCUUUCUUCUUCUU--CGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN60188_c0_g1_1497_TPlot.pdf
TRINITY_DN60188_c0_g1:1502	si_s82	TRINITY_DN60188_c0_g1	1491	1511	1502	-28.90	-20.10	0.695501730103806	14	7-21,1505-1491	1-6,1511-1506[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAAGAGGAAGGGGCCCAAA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN60188_c0_g1_1502_TPlot.pdf
TRINITY_DN60188_c0_g1:204	si_a400	TRINITY_DN60188_c0_g1	193	213	204	-22.80	-15.80	0.692982456140351	6	1-6,213-208;8-21,206-193	7-7,207-207[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	UAUAGAUAAGACGAGUUUAUA&UAUAGAAUUGUUUUGUUUAUA	2	0.998867299997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN60188_c0_g1_204_TPlot.pdf
TRINITY_DN60188_c0_g1:2835	si_a719	TRINITY_DN60188_c0_g1	2824	2844	2835	-34.60	-28.40	0.820809248554913	10.5	6-21,2839-2824	1-5,2844-2840[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUGUCCGAGUGACGACAAUG&AAUAAUCGUUACUCGGGCAUC	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN60188_c0_g1_2835_TPlot.pdf
TRINITY_DN60188_c0_g1:2836	si_a718	TRINITY_DN60188_c0_g1	2825	2845	2836	-32.60	-25.10	0.769938650306748	12.5	7-21,2839-2825	1-6,2845-2840[UP5]	(((((((((((((((......&......)))))))))))))))	AUGUCCGAGUGACGACAAUGC&AAAUAAUCGUUACUCGGGCAU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN60188_c0_g1_2836_TPlot.pdf
TRINITY_DN60188_c0_g1:565	si_a330	TRINITY_DN60188_c0_g1	554	574	565	-30.50	-20.10	0.659016393442623	13.5	6-12,569-563;14-21,561-554	1-5,574-570[UP5];13-13,562-562[SIL]	((((((((.(((((((.....&.....))))))).))))))))	UUGGGACAUGGGAUGGUGUUU&UUUUUUUAUUCCUUGUCCCGA	3	0.999999783320533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN60188_c0_g1_565_TPlot.pdf
TRINITY_DN60188_c0_g1:747	si_a791	TRINITY_DN60188_c0_g1	737	756	747	-26.50	-19.10	0.720754716981132	7	2-15,755-742;17-21,741-737	1-1,756-756[UP5];16-16,x-x[BULq]	(((((-((((((((((((((.&.)))))))))))))).)))))	GGAUU-GAAAGUGGAGGAGUU&UAUUUUUCUAUUUUCCAAUCC	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN60188_c0_g1_747_TPlot.pdf
TRINITY_DN60206_c0_g1:3245	si_s87	TRINITY_DN60206_c0_g1	3234	3254	3245	-32.90	-24.20	0.735562310030395	8.5	3-6,3252-3249;8-21,3247-3234	1-2,3254-3253[UP5];7-7,3248-3248[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AGGUGAAGGAGAAGUGGGGUG&UUCCUUUCUUCUUCUUCGCUU	2	0.998867299997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN60206_c0_g1_3245_TPlot.pdf
TRINITY_DN60206_c0_g1:3571	si_a296	TRINITY_DN60206_c0_g1	3560	3579	3571	-26.80	-17.78	0.663432835820896	15	1-5,3579-3575;12-21,3569-3560	6-11,3574-3570[AILq]	((((((((((.....-(((((&)))))......))))))))))	CAGGCGGAUCCGAUG-GAGUC&GAUUUAAAAAAGAUUCGCUUG	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a296_TRINITY_DN60206_c0_g1_3571_TPlot.pdf
TRINITY_DN6020_c0_g1:4317	si_a330	TRINITY_DN6020_c0_g1	4306	4325	4317	-30.50	-20.00	0.655737704918033	6	1-9,4325-4317;11-16,4316-4311;18-21,4309-4306	10-10,x-x[BULq];17-17,4310-4310[SIL]	((((.((((((-(((((((((&))))))))).)))))).))))	UCGGUACAAGG-AUGGAAGAA&UUUUUUUAUUCCUUGUCCCGA	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN6020_c0_g1_4317_TPlot.pdf
TRINITY_DN6020_c0_g1:4320	si_a327	TRINITY_DN6020_c0_g1	4308	4329	4320	-28.40	-21.50	0.757042253521127	7	1-10,4329-4320;13-19,4317-4311;20-21,4309-4308	11-12,4319-4318[SIL];x-x,4310-4310[BULt]	((.(((((((..((((((((((&))))))))))..)))))))-))	GGUACAAGGAUGGAAGAAAUCA&UGAUUUUUUUAUUCCUUGU-CC	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN6020_c0_g1_4320_TPlot.pdf
TRINITY_DN60215_c0_g1:284	si_a668	TRINITY_DN60215_c0_g1	273	294	284	-33.20	-23.00	0.692771084337349	11.5	1-4,294-291;6-19,288-275	5-5,290-289[AILt];20-21,274-273[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	GAGGAUGAGGAGUCGGGAGGGU&GCCU-AUUGAUUCCUUAUUCAC	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN60215_c0_g1_284_TPlot.pdf
TRINITY_DN6022_c1_g1:1519	si_a142	TRINITY_DN6022_c1_g1	1508	1528	1519	-23.50	-17.30	0.736170212765958	9	4-21,1525-1508	1-3,1528-1526[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUGAAAUAAUAACGGUUGCAG&AAUUAAUCGUUGUUGUUUUAA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6022_c1_g1_1519_TPlot.pdf
TRINITY_DN60230_c0_g1:1451	si_s375	TRINITY_DN60230_c0_g1	1440	1462	1451	-44.10	-29.40	0.666666666666667	9	2-4,1461-1459;5-9,1457-1453;11-19,1450-1442	1-1,1462-1462[UP5];x-x,1458-1458[BULt];10-10,1452-1451[AILt];20-21,1441-1440[UP3]	..(((((((((..(((((.(((.&.)))-)))))-.)))))))))..	GCGGCGGACACCUCGAGCUGAUG&GAUC-GCUCG-CGUGUCCGCCUU	4	0.99957419411952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN60230_c0_g1_1451_TPlot.pdf
TRINITY_DN60235_c0_g1:902	si_a350	TRINITY_DN60235_c0_g1	891	911	902	-20.30	-14.30	0.704433497536946	14	6-20,906-892	1-5,911-907[UP5];21-21,891-891[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CCGAAAUGGAGUUGGUCUCUA&AAAAUAUUAAUUCUAUUUUGA	2	0.962120194413448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN60235_c0_g1_902_TPlot.pdf
TRINITY_DN6023_c0_g1:2335	si_s636	TRINITY_DN6023_c0_g1	2325	2344	2335	-40.80	-28.20	0.691176470588235	4.5	1-15,2344-2330;18-21,2328-2325	16-17,2329-2329[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	UUGAA-GCAAGCGCCUGCGAA&UUCGUAGGCGUUUGCCCUCGA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN6023_c0_g1_2335_TPlot.pdf
TRINITY_DN6023_c0_g1:2391	si_a407	TRINITY_DN6023_c0_g1	2380	2400	2391	-19.80	-13.40	0.676767676767677	10	1-8,2400-2393;10-18,2391-2383	9-9,2392-2392[SIL];19-21,2382-2380[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CUCUGAAUGUAGCCGAGACGA&UUGUUUUGUUUAUAUUUAAAU	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN6023_c0_g1_2391_TPlot.pdf
TRINITY_DN6023_c0_g1:902	si_a482	TRINITY_DN6023_c0_g1	892	911	902	-26.70	-17.50	0.655430711610487	9.5	4-15,908-897;17-21,896-892	1-3,911-909[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	CGGCA-AUUCUGUAUGAUGCU&AUUGUUAUAUAGAAUAUGUCG	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN6023_c0_g1_902_TPlot.pdf
TRINITY_DN60258_c0_g1:973	si_s71	TRINITY_DN60258_c0_g1	962	983	973	-25.70	-17.30	0.673151750972763	5	2-9,982-975;10-11,973-972;13-21,970-962	1-1,983-983[UP5];x-x,974-974[BULt];12-12,971-971[SIL]	(((((((((.((.((((((((.&.))))))))-)).)))))))))	AGGAAAGAACAACAAAUAGAAA&CUUCUAUUU-UUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN60258_c0_g1_973_TPlot.pdf
TRINITY_DN60264_c0_g1:337	si_a499	TRINITY_DN60264_c0_g1	327	347	337	-35.20	-25.30	0.71875	7	1-9,347-339;10-13,337-334;16-21,332-327	x-x,338-338[BULt];14-15,333-333[AILq]	((((((.-((((.(((((((((&)))))))))-))))..))))))	CCAAGGC-GGCGCAGAAGCGAC&GUCGUUUUU-CGUCUUCCUUGG	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN60264_c0_g1_337_TPlot.pdf
TRINITY_DN60264_c0_g1:373	si_a286	TRINITY_DN60264_c0_g1	362	382	373	-28.30	-19.70	0.696113074204947	9.5	1-13,382-370	14-21,369-362[UP3]	........(((((((((((((&)))))))))))))........	GGGAAAGCGUCCAAGCGAUUU&AGAUCGCUUGGAUUUAAAAAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN60264_c0_g1_373_TPlot.pdf
TRINITY_DN60264_c0_g1:646	si_a504	TRINITY_DN60264_c0_g1	636	655	646	-32.90	-21.70	0.659574468085106	9	3-13,653-643;15-19,642-638	1-2,655-654[UP5];14-14,x-x[BULq];20-21,637-636[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	UUGUUCC-GGGAAGACGGGUC&UUUUCGUCUUCCUUGGAAUGU	4	0.999999361324981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN60264_c0_g1_646_TPlot.pdf
TRINITY_DN60264_c0_g1:647	si_a503	TRINITY_DN60264_c0_g1	637	656	647	-32.10	-21.70	0.67601246105919	10	4-14,653-643;16-20,642-638	1-3,656-654[UP5];15-15,x-x[BULq];21-21,637-637[UP3]	.(((((-(((((((((((...&...))))))))))).))))).	UGUUCC-GGGAAGACGGGUCA&UUUUUCGUCUUCCUUGGAAUG	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN60264_c0_g1_647_TPlot.pdf
TRINITY_DN60264_c0_g1:648	si_a502	TRINITY_DN60264_c0_g1	638	661	648	-32.10	-22.60	0.70404984423676	12	1-5,661-657;6-15,652-643;17-21,642-638	x-x,656-653[BULt];16-16,x-x[BULq]	(((((-((((((((((....(((((&)))))----)))))))))).)))))	GUUCC-GGGAAGACGGGUCAAAGAC&GUUUU----UCGUCUUCCUUGGAAU	2	0.998354591584854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN60264_c0_g1_648_TPlot.pdf
TRINITY_DN6026_c0_g1:2631	si_a329	TRINITY_DN6026_c0_g1	2620	2645	2631	-29.60	-22.50	0.760135135135135	15	1-8,2645-2638;9-21,2632-2620	x-x,2637-2633[BULt]	(((((((((((((.....((((((((&))))))))-----)))))))))))))	UGGGACGAGGAGUUCACCAAGAGGAU&AUUUUUUU-----AUUCCUUGUCCCG	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN6026_c0_g1_2631_TPlot.pdf
TRINITY_DN6026_c0_g1:2639	si_a326	TRINITY_DN6026_c0_g1	2623	2648	2639	-26.20	-17.70	0.675572519083969	16	1-11,2648-2638;12-21,2632-2623	x-x,2637-2633[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	GACGAGGAGUUCACCAAGAGGAUUGU&AUGAUUUUUUU-----AUUCCUUGUC	3	0.999999936974234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN6026_c0_g1_2639_TPlot.pdf
TRINITY_DN6026_c0_g1:4024	si_a533	TRINITY_DN6026_c0_g1	4013	4032	4024	-39.40	-25.70	0.652284263959391	8.5	1-8,4032-4025;10-16,4024-4018	9-9,x-x[BULq];17-21,4017-4013[UP3]	.....(((((((-((((((((&)))))))).))))))).....	UCUCUGCCGAUC-CUCGUGUG&CACGCGAGCGAUCGGUUCAAU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN6026_c0_g1_4024_TPlot.pdf
TRINITY_DN6026_c0_g1:5024	si_a591	TRINITY_DN6026_c0_g1	5005	5033	5024	-33.80	-22.60	0.668639053254438	12.5	1-11,5033-5023;12-17,5019-5014;18-21,5008-5005	x-x,5022-5020[BULt];x-x,5013-5009[BULt]	((((.....((((((...(((((((((((&)))))))))))---))))))-----))))	GCGGCUUCUAGGUUCUACUGUCCUUCUUG&CAAGAAGGACA---GAAUUU-----UCGC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN6026_c0_g1_5024_TPlot.pdf
TRINITY_DN6026_c0_g1:5027	si_a588	TRINITY_DN6026_c0_g1	5016	5036	5027	-29.00	-22.00	0.758620689655172	9	3-15,5034-5022	1-2,5036-5035[UP5];16-21,5021-5016[UP3]	......(((((((((((((..&..)))))))))))))......	GUUCUACUGUCCUUCUUGUCU&UAACAAGAAGGACAGAAUUUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a588_TRINITY_DN6026_c0_g1_5027_TPlot.pdf
TRINITY_DN6026_c0_g1:5028	si_a587	TRINITY_DN6026_c0_g1	5017	5037	5028	-30.80	-22.00	0.714285714285714	10	4-16,5034-5022	1-3,5037-5035[UP5];17-21,5021-5017[UP3]	.....(((((((((((((...&...))))))))))))).....	UUCUACUGUCCUUCUUGUCUG&GUAACAAGAAGGACAGAAUUU	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a587_TRINITY_DN6026_c0_g1_5028_TPlot.pdf
TRINITY_DN6026_c0_g1:5031	si_a584	TRINITY_DN6026_c0_g1	5020	5040	5031	-31.50	-22.00	0.698412698412698	13	7-19,5034-5022	1-6,5040-5035[UP5];20-21,5021-5020[UP3]	..(((((((((((((......&......)))))))))))))..	UACUGUCCUUCUUGUCUGGUC&UUUGUAACAAGAAGGACAGAA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a584_TRINITY_DN6026_c0_g1_5031_TPlot.pdf
TRINITY_DN6026_c0_g1:5607	si_s898	TRINITY_DN6026_c0_g1	5596	5616	5607	-30.70	-22.60	0.736156351791531	6.5	2-17,5615-5600	1-1,5616-5616[UP5];18-21,5599-5596[UP3]	....((((((((((((((((.&.))))))))))))))))....	UCCCAAGUUGGAGAGAAAGCG&GGCUUUCUCUUCAAUUUCAAU	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN6026_c0_g1_5607_TPlot.pdf
TRINITY_DN6026_c0_g1:5613	si_s892	TRINITY_DN6026_c0_g1	5602	5622	5613	-29.50	-21.00	0.711864406779661	14	8-21,5615-5602	1-7,5622-5616[UP5]	((((((((((((((.......&.......))))))))))))))	GUUGGAGAGAAAGCGCGAGCU&UAAAUAGGCUUUCUCUUCAAU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN6026_c0_g1_5613_TPlot.pdf
TRINITY_DN6027_c0_g1:1258	si_a335	TRINITY_DN6027_c0_g1	1247	1267	1258	-31.10	-21.30	0.684887459807074	10	2-9,1266-1259;11-15,1257-1253	1-1,1267-1267[UP5];10-10,1258-1258[SIL];16-21,1252-1247[UP3]	......(((((.((((((((.&.)))))))).)))))......	GGUAUACGGGAGAAGGAAUGG&UUAUUCCUUGUCCCGAAAAUA	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN6027_c0_g1_1258_TPlot.pdf
TRINITY_DN6027_c0_g1:1259	si_a334	TRINITY_DN6027_c0_g1	1248	1268	1259	-30.70	-22.70	0.739413680781759	9	1-10,1268-1259;12-16,1257-1253	11-11,1258-1258[SIL];17-21,1252-1248[UP3]	.....(((((.((((((((((&)))))))))).))))).....	GUAUACGGGAGAAGGAAUGGA&UUUAUUCCUUGUCCCGAAAAU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN6027_c0_g1_1259_TPlot.pdf
TRINITY_DN6027_c0_g1:1261	si_a332	TRINITY_DN6027_c0_g1	1250	1270	1261	-30.60	-22.90	0.748366013071895	9	3-12,1268-1259;14-18,1257-1253	1-2,1270-1269[UP5];13-13,1258-1258[SIL];19-21,1252-1250[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	AUACGGGAGAAGGAAUGGAUG&UUUUUAUUCCUUGUCCCGAAA	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN6027_c0_g1_1261_TPlot.pdf
TRINITY_DN6027_c0_g1:1262	si_a331	TRINITY_DN6027_c0_g1	1251	1271	1262	-30.60	-22.90	0.748366013071895	10	4-13,1268-1259;15-19,1257-1253	1-3,1271-1269[UP5];14-14,1258-1258[SIL];20-21,1252-1251[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	UACGGGAGAAGGAAUGGAUGA&UUUUUUAUUCCUUGUCCCGAA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN6027_c0_g1_1262_TPlot.pdf
TRINITY_DN6027_c0_g1:1263	si_a330	TRINITY_DN6027_c0_g1	1252	1272	1263	-30.50	-23.30	0.763934426229508	7	1-3,1272-1270;5-14,1268-1259;16-20,1257-1253	4-4,1269-1269[SIL];15-15,1258-1258[SIL];21-21,1252-1252[UP3]	.(((((.((((((((((.(((&))).)))))))))).))))).	ACGGGAGAAGGAAUGGAUGAA&UUUUUUUAUUCCUUGUCCCGA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN6027_c0_g1_1263_TPlot.pdf
TRINITY_DN6027_c0_g1:1264	si_a329	TRINITY_DN6027_c0_g1	1253	1273	1264	-29.60	-23.30	0.787162162162162	7	2-4,1272-1270;6-15,1268-1259;17-21,1257-1253	1-1,1273-1273[UP5];5-5,1269-1269[SIL];16-16,1258-1258[SIL]	(((((.((((((((((.(((.&.))).)))))))))).)))))	CGGGAGAAGGAAUGGAUGAAC&AUUUUUUUAUUCCUUGUCCCG	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN6027_c0_g1_1264_TPlot.pdf
TRINITY_DN6027_c0_g1:252	si_a210	TRINITY_DN6027_c0_g1	241	261	252	-26.70	-17.86	0.668913857677903	6.5	1-13,261-249;18-20,244-242	14-17,248-245[SIL];21-21,241-241[UP3]	.(((....(((((((((((((&)))))))))))))....))).	AGAGCCGUAUUGGUCGAUUUG&UAAAUCGACUAAUUAAACUCA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a210_TRINITY_DN6027_c0_g1_252_TPlot.pdf
TRINITY_DN6027_c0_g1:253	si_a209	TRINITY_DN6027_c0_g1	242	262	253	-26.20	-17.36	0.662595419847328	7	2-14,261-249;19-21,244-242	1-1,262-262[UP5];15-18,248-245[SIL]	(((....(((((((((((((.&.)))))))))))))....)))	GAGCCGUAUUGGUCGAUUUGG&AUAAAUCGACUAAUUAAACUC	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a209_TRINITY_DN6027_c0_g1_253_TPlot.pdf
TRINITY_DN60283_c0_g1:219	si_a351	TRINITY_DN60283_c0_g1	208	228	219	-20.50	-13.40	0.653658536585366	10	4-18,225-211	1-3,228-226[UP5];19-21,210-208[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAAGGAAUAGAAUUGAUAAAU&AAAUAUUAAUUCUAUUUUGAU	4	0.999999950610235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN60283_c0_g1_219_TPlot.pdf
TRINITY_DN60283_c0_g1:2228	si_a664	TRINITY_DN60283_c0_g1	2217	2237	2228	-29.60	-22.30	0.753378378378378	10	4-9,2234-2229;11-19,2227-2219	1-3,2237-2235[UP5];10-10,2228-2228[SIL];20-21,2218-2217[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	CGAAGGAAUCGUUAGGCAGAA&AAAUGCCUAUUGAUUCCUUAU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN60283_c0_g1_2228_TPlot.pdf
TRINITY_DN60283_c0_g1:2335	si_s432	TRINITY_DN60283_c0_g1	2324	2344	2335	-21.30	-15.60	0.732394366197183	6	2-16,2343-2329	1-1,2344-2344[UP5];17-21,2328-2324[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUAUUUAUGUAAUUAUUGUUU&UAACAAUAAUUACAUAUUAUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN60283_c0_g1_2335_TPlot.pdf
TRINITY_DN60283_c0_g1:823	si_a753	TRINITY_DN60283_c0_g1	812	832	823	-33.10	-22.90	0.691842900302115	7.5	2-3,831-830;6-19,827-814	1-1,832-832[UP5];4-5,829-828[SIL];20-21,813-812[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	ACAAACCUAAAGGAGGCCCAG&AUGAACCUCCUUUGGGUUUUU	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN60283_c0_g1_823_TPlot.pdf
TRINITY_DN6028_c0_g1:2369	si_s819	TRINITY_DN6028_c0_g1	2358	2378	2369	-23.00	-15.10	0.656521739130435	8	1-12,2378-2367;14-16,2365-2363	13-13,2366-2366[SIL];17-21,2362-2358[UP3]	.....(((.((((((((((((&)))))))))))).))).....	UAAACUCAAUAUUGAGAAGAG&CUUUUCUUAAUAAUGAAAAAC	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN6028_c0_g1_2369_TPlot.pdf
TRINITY_DN6028_c0_g1:3206	si_s80	TRINITY_DN6028_c0_g1	3194	3215	3206	-28.20	-18.40	0.652482269503546	4.5	1-11,3215-3205;12-16,3203-3199;18-20,3197-3195	x-x,3204-3204[BULt];17-17,3198-3198[SIL];21-21,3194-3194[UP3]	.(((.(((((.(((((((((((&)))))))))))-))))).))).	UGAGCAGAAACGGAAAGAAAAA&UUUUUCUUUCC-UUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6028_c0_g1_3206_TPlot.pdf
TRINITY_DN6028_c0_g1:3210	si_s76	TRINITY_DN6028_c0_g1	3198	3219	3210	-23.60	-16.40	0.694915254237288	9	5-15,3215-3205;16-20,3203-3199	1-4,3219-3216[UP5];x-x,3204-3204[BULt];21-21,3198-3198[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	CAGAAACGGAAAGAAAAACCAA&AUUUUUUUUCUUUCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6028_c0_g1_3210_TPlot.pdf
TRINITY_DN6028_c0_g1:977	si_s76	TRINITY_DN6028_c0_g1	966	986	977	-23.60	-17.90	0.758474576271186	6.5	2-12,985-975;14-19,973-968	1-1,986-986[UP5];13-13,974-974[SIL];20-21,967-966[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	UCGAAGGGCGAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6028_c0_g1_977_TPlot.pdf
TRINITY_DN60293_c0_g1:597	si_s378	TRINITY_DN60293_c0_g1	585	607	597	-43.80	-28.60	0.65296803652968	9	1-7,607-601;8-15,599-592;16-17,590-589	x-x,600-600[BULt];x-x,591-591[BULt];18-21,588-585[UP3]	....((.((((((((.(((((((&)))))))-))))))))-))....	GAAUAGUGCGGACGCUGUGAGCG&CGCUCGC-GUGUCCGC-CUUACA	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN60293_c0_g1_597_TPlot.pdf
TRINITY_DN6029_c0_g1:283	si_s548	TRINITY_DN6029_c0_g1	272	292	283	-22.50	-15.30	0.68	7	5-21,288-272	1-4,292-289[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAUAUUAAUUCUAUUUUUAAC&GAUCAAAAUAGAAUUAAUAUU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s548_TRINITY_DN6029_c0_g1_283_TPlot.pdf
TRINITY_DN602_c0_g1:1417	si_s61	TRINITY_DN602_c0_g1	1406	1426	1417	-26.50	-19.30	0.728301886792453	10.5	3-9,1424-1418;11-19,1416-1408	1-2,1426-1425[UP5];10-10,1417-1417[SIL];20-21,1407-1406[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	GUGGAUGGAGGAUGCUGACGG&AAGUUAGCAACUUCUAUUUUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN602_c0_g1_1417_TPlot.pdf
TRINITY_DN6030_c0_g1:1127	si_s15	TRINITY_DN6030_c0_g1	1115	1136	1127	-25.60	-17.30	0.67578125	8.5	1-4,1136-1133;6-11,1131-1126;12-20,1124-1116	5-5,1132-1132[SIL];x-x,1125-1125[BULt];21-21,1115-1115[UP3]	.(((((((((.((((((.((((&)))).))))))-))))))))).	GGCGGUCAGUGAUAGUACUGGU&AUUAUUACUAU-AUUGAUUGCA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN6030_c0_g1_1127_TPlot.pdf
TRINITY_DN6031_c0_g1:3542	si_s43	TRINITY_DN6031_c0_g1	3531	3550	3542	-25.50	-17.30	0.67843137254902	9	1-6,3550-3545;8-18,3544-3534	7-7,x-x[BULq];19-21,3533-3531[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	ACAGAGGUCCAGUU-UUGGAG&CUUUAAUAAUUGGAUUUCAAG	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN6031_c0_g1_3542_TPlot.pdf
TRINITY_DN6031_c0_g1:3757	si_s164	TRINITY_DN6031_c0_g1	3746	3773	3757	-40.20	-26.88	0.66865671641791	19	1-8,3773-3766;11-21,3756-3746	9-10,3765-3757[AILt]	(((((((((((.........((((((((&))))))))-------..)))))))))))	CAUUUUUGCCCGCGAAUGGCGGCCAUGA&UCAUGGCC-------AGGGGUAAAGAUG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN6031_c0_g1_3757_TPlot.pdf
TRINITY_DN6032_c0_g1:1611	si_s681	TRINITY_DN6032_c0_g1	1600	1620	1611	-25.10	-19.80	0.788844621513944	6	1-15,1620-1606	16-21,1605-1600[UP3]	......(((((((((((((((&)))))))))))))))......	UUUCACAACUCAUGUUUCUAU&AUAGAAACAUGAGUUUAAUUA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN6032_c0_g1_1611_TPlot.pdf
TRINITY_DN6032_c0_g1:1612	si_s680	TRINITY_DN6032_c0_g1	1601	1621	1612	-25.10	-19.80	0.788844621513944	6	2-16,1620-1606	1-1,1621-1621[UP5];17-21,1605-1601[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUCACAACUCAUGUUUCUAUU&UAUAGAAACAUGAGUUUAAUU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN6032_c0_g1_1612_TPlot.pdf
TRINITY_DN6032_c0_g1:1618	si_s674	TRINITY_DN6032_c0_g1	1607	1626	1618	-27.60	-19.60	0.710144927536232	9	4-5,1623-1622;8-21,1620-1607	1-3,1626-1624[UP5];6-7,1621-1621[AILq]	((((((((((((((.-((...&...))..))))))))))))))	ACUCAUGUUUCUAUU-UCUAC&AUUGAUUAUAGAAACAUGAGU	2	0.248933755826894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s674_TRINITY_DN6032_c0_g1_1618_TPlot.pdf
TRINITY_DN60340_c0_g1:433	si_a498	TRINITY_DN60340_c0_g1	423	442	433	-33.50	-22.20	0.662686567164179	6	2-10,441-433;12-14,432-430;16-21,428-423	1-1,442-442[UP5];11-11,x-x[BULq];15-15,429-429[SIL]	((((((.(((-(((((((((.&.))))))))).))).))))))	CAAGGAUGAC-AAGAAUGACU&UGUCGUUUUUCGUCUUCCUUG	2	0.99999998248527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN60340_c0_g1_433_TPlot.pdf
TRINITY_DN60349_c0_g1:1909	si_a19	TRINITY_DN60349_c0_g1	1898	1918	1909	-27.00	-17.90	0.662962962962963	9	2-5,1917-1914;7-9,1912-1910;11-20,1908-1899	1-1,1918-1918[UP5];6-6,1913-1913[SIL];10-10,1909-1909[SIL];21-21,1898-1898[UP3]	.((((((((((.(((.((((.&.)))).))).)))))))))).	UGGACUGAAGAAGAAAAGGCG&AGCCUAUUUAUUUUUAGUUCU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN60349_c0_g1_1909_TPlot.pdf
TRINITY_DN60352_c0_g1:404	si_a862	TRINITY_DN60352_c0_g1	393	416	404	-22.70	-15.60	0.687224669603524	12.5	3-5,414-412;6-20,408-394	1-2,416-415[UP5];x-x,411-409[BULt];21-21,393-393[UP3]	.(((((((((((((((...(((..&..)))---))))))))))))))).	CGAAUCUUUAGUAGUUCACGGAAA&AAUCC---AAUUAUUAAAGAUUUA	1	0.0320010288600399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN60352_c0_g1_404_TPlot.pdf
TRINITY_DN60367_c0_g1:224	si_a75	TRINITY_DN60367_c0_g1	213	233	224	-21.30	-14.10	0.661971830985915	13	5-19,229-215	1-4,233-230[UP5];20-21,214-213[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAAAUAAUGGAAGGCGAAGAA&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999999928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN60367_c0_g1_224_TPlot.pdf
TRINITY_DN60367_c0_g1:450	si_a410	TRINITY_DN60367_c0_g1	439	459	450	-17.80	-11.80	0.662921348314607	10.5	4-18,456-442	1-3,459-457[UP5];19-21,441-439[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUAAUUUAGAUAUAGAUACCU&UUUUGUUUAUAUUUAAAUAAA	2	0.999999996303917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN60367_c0_g1_450_TPlot.pdf
TRINITY_DN6036_c0_g1:2820	si_s13	TRINITY_DN6036_c0_g1	2809	2829	2820	-22.90	-15.20	0.663755458515284	11.5	5-18,2825-2812	1-4,2829-2826[UP5];19-21,2811-2809[UP3]	...((((((((((((((....&....))))))))))))))...	UAUUCGAUAUAGUAAUGGAGU&UUAUUAUUACUAUAUUGAUUG	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN6036_c0_g1_2820_TPlot.pdf
TRINITY_DN6036_c0_g1:2823	si_s10	TRINITY_DN6036_c0_g1	2812	2830	2823	-23.80	-17.80	0.747899159663866	6.5	1-5,2830-2826;8-21,2825-2812	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	UCGAUAUAGUAAUG--GAGUA&UACUUAUUAUUACUAUAUUGA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN6036_c0_g1_2823_TPlot.pdf
TRINITY_DN6036_c0_g1:2850	si_a872	TRINITY_DN6036_c0_g1	2839	2859	2850	-27.00	-18.70	0.692592592592593	8	1-16,2859-2844	17-21,2843-2839[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAAAGCAACUGAAUUUUUGA&UUAAAGAUUUAGUUGCAAUCA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN6036_c0_g1_2850_TPlot.pdf
TRINITY_DN6036_c0_g1:3095	si_s73	TRINITY_DN6036_c0_g1	3080	3104	3095	-24.00	-16.30	0.679166666666667	11.5	1-15,3104-3090;16-18,3085-3083	x-x,3089-3086[BULt];19-21,3082-3080[UP3]	...(((....(((((((((((((((&)))))))))))))))----)))...	GCUGGAAUGUGAGAAAAGGGAUGGA&UCUAUUUUUUUUCUU----UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6036_c0_g1_3095_TPlot.pdf
TRINITY_DN60377_c0_g1:322	si_a22	TRINITY_DN60377_c0_g1	311	331	322	-23.50	-15.50	0.659574468085106	6	1-14,331-318;16-20,316-312	15-15,317-317[SIL];21-21,311-311[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AUUAGGUUUAGGAAUAAAUGG&CUAUUUAUUUUUAGUUCUAAG	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN60377_c0_g1_322_TPlot.pdf
TRINITY_DN6038_c0_g1:1393	si_a495	TRINITY_DN6038_c0_g1	1377	1402	1393	-31.90	-20.80	0.652037617554859	10.5	1-4,1402-1399;6-14,1397-1389;15-21,1383-1377	5-5,1398-1398[SIL];x-x,1388-1384[BULt]	(((((((.....(((((((((.((((&)))).)))))))))-----)))))))	GGAAGGCACUUGGAGAGACGAAAUGU&AUAUGUCGUUUUUC-----GUCUUCC	3	0.999999999998377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN6038_c0_g1_1393_TPlot.pdf
TRINITY_DN6038_c0_g1:602	si_s606	TRINITY_DN6038_c0_g1	591	611	602	-28.20	-18.76	0.665248226950355	7	2-14,610-598;19-21,593-591	1-1,611-611[UP5];15-18,597-594[SIL]	(((....(((((((((((((.&.)))))))))))))....)))	UGGUAAGAAAGAAGAUUCGUA&AGCGAAUCUUUUUUAAAUCCA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN6038_c0_g1_602_TPlot.pdf
TRINITY_DN60391_c0_g1:1003	si_s67	TRINITY_DN60391_c0_g1	992	1013	1003	-25.60	-19.90	0.77734375	5.5	1-7,1013-1007;8-19,1005-994	x-x,1006-1006[BULt];20-21,993-992[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	ACGAAAAAAGAUAGAAAGUUGU&GCAACUU-CUAUUUUUUUUCUU	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN60391_c0_g1_1003_TPlot.pdf
TRINITY_DN60391_c0_g1:1008	si_s63	TRINITY_DN60391_c0_g1	996	1017	1008	-25.80	-17.60	0.682170542635659	6.5	3-11,1015-1007;12-21,1005-996	1-2,1017-1016[UP5];x-x,1006-1006[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	AAAAAGAUAGAAAGUUGUUAUU&GUUAGCAACUU-CUAUUUUUUU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN60391_c0_g1_1008_TPlot.pdf
TRINITY_DN60391_c0_g1:724	si_s701	TRINITY_DN60391_c0_g1	712	732	724	-30.50	-20.10	0.659016393442623	5.5	1-4,732-729;7-16,727-718;17-21,716-712	5-6,728-728[AILq];x-x,717-717[BULt]	(((((.((((((((((.-((((&))))..))))))))))-)))))	CUGUUCCGCUAAUAAAA-GACU&AGUCGAUUUAUUAGUG-AACAG	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN60391_c0_g1_724_TPlot.pdf
TRINITY_DN60391_c0_g1:951	si_a595	TRINITY_DN60391_c0_g1	940	961	951	-30.30	-20.32	0.670627062706271	10	2-7,960-955;11-20,950-941	1-1,961-961[UP5];8-10,954-951[AILt];21-21,940-940[UP3]	.((((((((((....((((((.&.))))))-...)))))))))).	CAUUGCGAAAACACGUGUCCUA&AAGGACA-GAAUUUUCGCAAUU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN60391_c0_g1_951_TPlot.pdf
TRINITY_DN6039_c0_g1:1081	si_a598	TRINITY_DN6039_c0_g1	1060	1090	1081	-32.30	-22.90	0.708978328173375	23.5	1-10,1090-1081;11-20,1070-1061	x-x,1080-1071[BULt];21-21,1060-1060[UP3]	.((((((((((..........((((((((((&))))))))))----------)))))))))).	AGGAAUUGUGGCGUAUUCUCUGAAUUCUGUC&GACAGAAUUU----------UCGCAAUUCCA	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a598_TRINITY_DN6039_c0_g1_1081_TPlot.pdf
TRINITY_DN603_c0_g1:1862	si_a583	TRINITY_DN603_c0_g1	1850	1870	1862	-33.10	-21.80	0.658610271903323	7.5	1-7,1870-1864;9-16,1863-1856;17-20,1854-1851	8-8,x-x[BULq];x-x,1855-1855[BULt];21-21,1850-1850[UP3]	.((((.((((((((-(((((((&))))))).))))))))-)))).	CUUGUACCUUCUUG-UGCGGAC&GUUUGUAACAAGAAGG-ACAGA	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a583_TRINITY_DN603_c0_g1_1862_TPlot.pdf
TRINITY_DN603_c0_g1:1863	si_a582	TRINITY_DN603_c0_g1	1851	1871	1863	-32.80	-21.50	0.655487804878049	7.5	2-8,1870-1864;10-17,1863-1856;18-21,1854-1851	1-1,1871-1871[UP5];9-9,x-x[BULq];x-x,1855-1855[BULt]	((((.((((((((-(((((((.&.))))))).))))))))-))))	UUGUACCUUCUUG-UGCGGACC&UGUUUGUAACAAGAAGG-ACAG	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a582_TRINITY_DN603_c0_g1_1863_TPlot.pdf
TRINITY_DN60402_c0_g1:681	si_a781	TRINITY_DN60402_c0_g1	670	690	681	-27.40	-19.50	0.711678832116788	11.5	5-19,686-672	1-4,690-687[UP5];20-21,671-670[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAAGAGGGAUAGAGGAGGACA&UCAACUCUUCUAUUUUUCUAU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN60402_c0_g1_681_TPlot.pdf
TRINITY_DN60411_c0_g1:1246	si_s67	TRINITY_DN60411_c0_g1	1235	1255	1246	-25.60	-19.70	0.76953125	4	2-9,1254-1247;11-21,1245-1235	1-1,1255-1255[UP5];10-10,1246-1246[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	AGGAAAAAGAAAAGAAGUUGG&GCAACUUCUAUUUUUUUUCUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN60411_c0_g1_1246_TPlot.pdf
TRINITY_DN60411_c0_g1:1248	si_s65	TRINITY_DN60411_c0_g1	1237	1257	1248	-26.00	-17.90	0.688461538461538	7.5	4-11,1254-1247;13-21,1245-1237	1-3,1257-1255[UP5];12-12,1246-1246[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAAAAAGAAAAGAAGUUGGAA&UAGCAACUUCUAUUUUUUUUC	4	0.999901665387931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN60411_c0_g1_1248_TPlot.pdf
TRINITY_DN6041_c0_g1:948	si_a785	TRINITY_DN6041_c0_g1	937	958	948	-25.90	-18.80	0.725868725868726	6.5	1-6,958-953;8-20,950-938	7-7,952-951[AILt];21-21,937-937[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	UAAAAUGGAAGAAUUUGAAGAG&CUCUUC-UAUUUUUCUAUUUUC	4	0.999996457062207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6041_c0_g1_948_TPlot.pdf
TRINITY_DN6041_c1_g1:564	si_a898	TRINITY_DN6041_c1_g1	554	573	564	-20.50	-13.70	0.668292682926829	4	2-11,572-563;13-20,562-555	1-1,573-573[UP5];12-12,x-x[BULq];21-21,554-554[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	CUUUAUAUU-CUUAUUAUUAA&GUAAUAAUAAGUAAUAUAAAA	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN6041_c1_g1_564_TPlot.pdf
TRINITY_DN6042_c0_g1:202	si_a762	TRINITY_DN6042_c0_g1	191	211	202	-29.70	-20.80	0.7003367003367	10	1-17,211-195	18-21,194-191[UP3]	....(((((((((((((((((&)))))))))))))))))....	CCCACGGUCAGAGGCCUGAAG&CUUUGGGUUUUUGAUUGAUUC	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN6042_c0_g1_202_TPlot.pdf
TRINITY_DN60433_c0_g1:280	si_a457	TRINITY_DN60433_c0_g1	269	288	280	-23.50	-15.60	0.663829787234043	9	3-9,286-280;12-21,278-269	1-2,288-287[UP5];10-11,279-279[AILq]	((((((((((.-(((((((..&..)))))))..))))))))))	ACAUGUUGUAC-UAGCAACUG&UUGUUGUUAUAUAUAAUAUGU	2	0.980896339800985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN60433_c0_g1_280_TPlot.pdf
TRINITY_DN6043_c0_g1:10839	si_s87	TRINITY_DN6043_c0_g1	10825	10848	10839	-32.90	-22.40	0.680851063829787	8.5	2-10,10847-10839;11-14,10836-10833;15-20,10831-10826	1-1,10848-10848[UP5];x-x,10838-10837[BULt];x-x,10832-10832[BULt];21-21,10825-10825[UP3]	.((((((.((((..(((((((((.&.)))))))))--))))-)))))).	UGGCGAACGAGGCCAAGAAAGGAC&UUCCUUUCUU--CUUC-UUCGCUU	2	0.999999999863435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6043_c0_g1_10839_TPlot.pdf
TRINITY_DN6043_c0_g1:10840	si_s86	TRINITY_DN6043_c0_g1	10826	10849	10840	-32.90	-22.40	0.680851063829787	9	3-11,10847-10839;12-15,10836-10833;16-21,10831-10826	1-2,10849-10848[UP5];x-x,10838-10837[BULt];x-x,10832-10832[BULt]	((((((.((((..(((((((((..&..)))))))))--))))-))))))	GGCGAACGAGGCCAAGAAAGGACC&UUUCCUUUCUU--CUUC-UUCGCU	2	0.999999999856464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6043_c0_g1_10840_TPlot.pdf
TRINITY_DN6043_c0_g1:11303	si_s77	TRINITY_DN6043_c0_g1	11291	11312	11303	-25.50	-17.70	0.694117647058824	8	3-14,11310-11299;16-19,11297-11294;20-21,11292-11291	1-2,11312-11311[UP5];15-15,11298-11298[SIL];x-x,11293-11293[BULt]	((.((((.((((((((((((..&..)))))))))))).))))-))	GACAGAACGGAGAGAAGAGACA&UUUUUUUUCUUUCCUUUCU-UC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6043_c0_g1_11303_TPlot.pdf
TRINITY_DN6043_c0_g1:11304	si_s76	TRINITY_DN6043_c0_g1	11293	11313	11304	-23.60	-17.20	0.728813559322034	10	4-15,11310-11299;17-20,11297-11294	1-3,11313-11311[UP5];16-16,11298-11298[SIL];21-21,11293-11293[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	CAGAACGGAGAGAAGAGACAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6043_c0_g1_11304_TPlot.pdf
TRINITY_DN6043_c0_g1:2564	si_s688	TRINITY_DN6043_c0_g1	2552	2574	2564	-28.20	-19.70	0.698581560283688	9	1-9,2574-2566;12-13,2562-2561;14-21,2559-2552	10-11,2565-2563[AILt];x-x,2560-2560[BULt]	((((((((.((...(((((((((&)))))))))-..))-))))))))	AAUCGGCUCGAGACAAGCUCAUG&CAUGAGUUU-AAUU-AGUCGAUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN6043_c0_g1_2564_TPlot.pdf
TRINITY_DN6043_c0_g1:2675	si_s75	TRINITY_DN6043_c0_g1	2663	2684	2675	-24.00	-16.20	0.675	9	2-4,2683-2681;6-15,2679-2670;16-21,2668-2663	1-1,2684-2684[UP5];5-5,2680-2680[SIL];x-x,2669-2669[BULt]	((((((.((((((((((.(((.&.))).))))))))))-))))))	GGAAAGCGAGGGAGAGACGAUU&UAUUUUUUUUCUUUC-CUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6043_c0_g1_2675_TPlot.pdf
TRINITY_DN6043_c0_g1:6461	si_s305	TRINITY_DN6043_c0_g1	6450	6470	6461	-30.30	-20.48	0.675907590759076	13	4-9,6467-6462;13-20,6458-6451	1-3,6470-6468[UP5];10-12,6461-6459[SIL];21-21,6450-6450[UP3]	.((((((((...((((((...&...))))))...)))))))).	CGGGACAGGCAGUUCGCAUCC&AAUUGCGAAAAUUCUGUCCUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN6043_c0_g1_6461_TPlot.pdf
TRINITY_DN6043_c0_g1:6469	si_s295	TRINITY_DN6043_c0_g1	6460	6479	6469	-32.20	-21.10	0.65527950310559	8	1-5,6479-6475;6-11,6473-6468;14-19,6467-6462	x-x,6474-6474[BULt];12-13,x-x[BULq];20-21,6461-6460[UP3]	..((((((--((((((.(((((&)))))-))))))..))))))..	AGUUCGCA--UCCAGUACGACU&AGUCG-AUUGGAAUUGCGAAAA	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN6043_c0_g1_6469_TPlot.pdf
TRINITY_DN6043_c0_g1:6622	si_s296	TRINITY_DN6043_c0_g1	6611	6632	6622	-31.60	-21.20	0.670886075949367	10	1-4,6632-6629;6-9,6627-6624;11-18,6621-6614	5-5,6628-6628[SIL];10-10,6623-6622[AILt];19-21,6613-6611[UP3]	...((((((((..((((.((((&)))).))))-.))))))))...	UUCUUCGCAGUGACCAAACGAC&GUCGAUUGG-AAUUGCGAAAAU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN6043_c0_g1_6622_TPlot.pdf
TRINITY_DN6043_c0_g1:6624	si_s295	TRINITY_DN6043_c0_g1	6612	6633	6624	-32.20	-21.30	0.661490683229814	9.5	2-5,6632-6629;7-10,6627-6624;12-19,6621-6614	1-1,6633-6633[UP5];6-6,6628-6628[SIL];11-11,6623-6622[AILt];20-21,6613-6612[UP3]	..((((((((..((((.((((.&.)))).))))-.))))))))..	UCUUCGCAGUGACCAAACGACA&AGUCGAUUGG-AAUUGCGAAAA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN6043_c0_g1_6624_TPlot.pdf
TRINITY_DN6043_c0_g1:6625	si_s294	TRINITY_DN6043_c0_g1	6613	6634	6625	-32.60	-21.30	0.653374233128834	10.5	3-6,6632-6629;8-11,6627-6624;13-20,6621-6614	1-2,6634-6633[UP5];7-7,6628-6628[SIL];12-12,6623-6622[AILt];21-21,6613-6613[UP3]	.((((((((..((((.((((..&..)))).))))-.)))))))).	CUUCGCAGUGACCAAACGACAG&UAGUCGAUUGG-AAUUGCGAAA	2	0.977259987595635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN6043_c0_g1_6625_TPlot.pdf
TRINITY_DN6043_c0_g1:6912	si_a665	TRINITY_DN6043_c0_g1	6900	6921	6912	-29.60	-20.00	0.675675675675676	8.5	3-12,6919-6910;14-15,6908-6907;16-19,6905-6902	1-2,6921-6920[UP5];13-13,6909-6909[SIL];x-x,6906-6906[BULt];20-21,6901-6900[UP3]	..((((.((.((((((((((..&..)))))))))).))-))))..	CUUGAGCGAUUCGAUAGGCAGG&AAUGCCUAUUGAUUC-CUUAUU	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN6043_c0_g1_6912_TPlot.pdf
TRINITY_DN6043_c0_g1:6913	si_a664	TRINITY_DN6043_c0_g1	6901	6922	6913	-29.60	-20.00	0.675675675675676	9.5	4-13,6919-6910;15-16,6908-6907;17-20,6905-6902	1-3,6922-6920[UP5];14-14,6909-6909[SIL];x-x,6906-6906[BULt];21-21,6901-6901[UP3]	.((((.((.((((((((((...&...)))))))))).))-)))).	UUGAGCGAUUCGAUAGGCAGGC&AAAUGCCUAUUGAUUC-CUUAU	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN6043_c0_g1_6913_TPlot.pdf
TRINITY_DN6043_c0_g1:7117	si_a58	TRINITY_DN6043_c0_g1	7106	7126	7117	-34.60	-23.00	0.664739884393064	11	2-4,7125-7123;7-17,7120-7110	1-1,7126-7126[UP5];5-6,7122-7121[SIL];18-21,7109-7106[UP3]	....(((((((((((..(((.&.)))..)))))))))))....	CGACGGAGAGGCGAGGAGACG&AGUCGACUCGCUUCUUUCAAA	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN6043_c0_g1_7117_TPlot.pdf
TRINITY_DN6043_c0_g1:7294	si_s313	TRINITY_DN6043_c0_g1	7284	7303	7294	-30.80	-21.60	0.701298701298701	12.5	5-15,7299-7289;17-21,7288-7284	1-4,7303-7300[UP5];16-16,x-x[BULq]	(((((-(((((((((((....&....))))))))))).)))))	GUGGC-GGAGGGGCGGAGAGA&AAAUUCUGUCCUUCUUGUUAC	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN6043_c0_g1_7294_TPlot.pdf
TRINITY_DN60442_c0_g1:28	si_a76	TRINITY_DN60442_c0_g1	17	37	28	-21.20	-13.90	0.655660377358491	10	2-7,36-31;9-18,29-20	1-1,37-37[UP5];8-8,30-30[SIL];19-21,19-17[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	GAGGGUGGUGAGAUACAGUUA&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999999914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN60442_c0_g1_28_TPlot.pdf
TRINITY_DN60442_c0_g1:29	si_a75	TRINITY_DN60442_c0_g1	18	38	29	-21.30	-13.90	0.652582159624413	11	3-8,36-31;10-19,29-20	1-2,38-37[UP5];9-9,30-30[SIL];20-21,19-18[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	AGGGUGGUGAGAUACAGUUAU&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN60442_c0_g1_29_TPlot.pdf
TRINITY_DN60442_c0_g1:294	si_s189	TRINITY_DN60442_c0_g1	283	303	294	-27.90	-18.20	0.652329749103943	9	1-10,303-294;12-17,292-287	11-11,293-293[SIL];18-21,286-283[UP3]	....((((((.((((((((((&)))))))))).))))))....	AUUGCCGGAGGAGUCGUUACU&AGUAACGAUUAUUUUGGAAUG	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN60442_c0_g1_294_TPlot.pdf
TRINITY_DN60442_c0_g1:295	si_s188	TRINITY_DN60442_c0_g1	284	304	295	-28.20	-18.60	0.659574468085106	8.5	2-11,303-294;13-18,292-287	1-1,304-304[UP5];12-12,293-293[SIL];19-21,286-284[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	UUGCCGGAGGAGUCGUUACUG&GAGUAACGAUUAUUUUGGAAU	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN60442_c0_g1_295_TPlot.pdf
TRINITY_DN60442_c0_g1:390	si_a789	TRINITY_DN60442_c0_g1	376	400	390	-24.80	-16.70	0.673387096774194	9	1-9,400-392;10-15,390-385;16-21,381-376	x-x,391-391[BULt];x-x,384-382[BULt]	((((((...((((((.(((((((((&)))))))))-))))))---))))))	AUUGGACACGGAUGGUGAAGAUAGA&UCUAUUUUU-CUAUUU---UCCAAU	3	0.999999999807219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN60442_c0_g1_390_TPlot.pdf
TRINITY_DN60442_c0_g1:392	si_a788	TRINITY_DN60442_c0_g1	377	401	392	-24.80	-16.40	0.661290322580645	9	1-10,401-392;11-16,390-385;17-21,381-377	x-x,391-391[BULt];x-x,384-382[BULt]	(((((...((((((.((((((((((&))))))))))-))))))---)))))	UUGGACACGGAUGGUGAAGAUAGAA&UUCUAUUUUU-CUAUUU---UCCAA	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN60442_c0_g1_392_TPlot.pdf
TRINITY_DN60442_c0_g1:394	si_a794	TRINITY_DN60442_c0_g1	382	403	394	-28.60	-19.40	0.678321678321678	6	1-12,403-392;13-13,390-390;15-19,388-384	x-x,391-391[BULt];14-14,389-389[SIL];20-21,383-382[UP3]	..(((((.(.((((((((((((&))))))))))))-).)))))..	CACGGAUGGUGAAGAUAGAAAA&UUUUCUAUUUUC-CAAUCCGAA	3	0.999035252687971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN60442_c0_g1_394_TPlot.pdf
TRINITY_DN60442_c0_g1:395	si_a793	TRINITY_DN60442_c0_g1	383	404	395	-28.50	-19.60	0.687719298245614	5	2-13,403-392;14-14,390-390;16-20,388-384	1-1,404-404[UP5];x-x,391-391[BULt];15-15,389-389[SIL];21-21,383-383[UP3]	.(((((.(.((((((((((((.&.))))))))))))-).))))).	ACGGAUGGUGAAGAUAGAAAAU&UUUUUCUAUUUUC-CAAUCCGA	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN60442_c0_g1_395_TPlot.pdf
TRINITY_DN60442_c0_g1:396	si_a792	TRINITY_DN60442_c0_g1	384	405	396	-27.60	-19.60	0.710144927536232	6	3-14,403-392;15-15,390-390;17-21,388-384	1-2,405-404[UP5];x-x,391-391[BULt];16-16,389-389[SIL]	(((((.(.((((((((((((..&..))))))))))))-).)))))	CGGAUGGUGAAGAUAGAAAAUG&AUUUUUCUAUUUUC-CAAUCCG	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN60442_c0_g1_396_TPlot.pdf
TRINITY_DN6044_c0_g1:38	si_s713	TRINITY_DN6044_c0_g1	27	48	38	-32.00	-21.00	0.65625	11.5	2-7,47-42;9-17,39-31	1-1,48-48[UP5];8-8,41-40[AILt];18-21,30-27[UP3]	....(((((((((..((((((.&.))))))-.)))))))))....	GACGGUCUUUCCUGAGUUCGCA&AGUGAAC-AGGGAAAGAUAUUA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s713_TRINITY_DN6044_c0_g1_38_TPlot.pdf
TRINITY_DN6044_c0_g1:39	si_s712	TRINITY_DN6044_c0_g1	28	49	39	-32.00	-21.00	0.65625	12.5	3-8,47-42;10-18,39-31	1-2,49-48[UP5];9-9,41-40[AILt];19-21,30-28[UP3]	...(((((((((..((((((..&..))))))-.)))))))))...	ACGGUCUUUCCUGAGUUCGCAU&UAGUGAAC-AGGGAAAGAUAUU	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s712_TRINITY_DN6044_c0_g1_39_TPlot.pdf
TRINITY_DN6044_c0_g1:40	si_s711	TRINITY_DN6044_c0_g1	29	50	40	-32.10	-21.00	0.654205607476635	13.5	4-9,47-42;11-19,39-31	1-3,50-48[UP5];10-10,41-40[AILt];20-21,30-29[UP3]	..(((((((((..((((((...&...))))))-.)))))))))..	CGGUCUUUCCUGAGUUCGCAUG&UUAGUGAAC-AGGGAAAGAUAU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s711_TRINITY_DN6044_c0_g1_40_TPlot.pdf
TRINITY_DN6044_c0_g1:43	si_s709	TRINITY_DN6044_c0_g1	31	53	43	-32.00	-21.90	0.684375	10	1-5,53-49;6-11,47-42;13-21,39-31	x-x,48-48[BULt];12-12,41-40[AILt]	(((((((((..((((((.(((((&)))))-))))))-.)))))))))	GUCUUUCCUGAGUUCGCAUGGUA&UAUUA-GUGAAC-AGGGAAAGAU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s709_TRINITY_DN6044_c0_g1_43_TPlot.pdf
TRINITY_DN6044_c0_g1:45	si_s707	TRINITY_DN6044_c0_g1	33	55	45	-30.90	-20.10	0.650485436893204	8.5	1-7,55-49;8-13,47-42;15-21,39-33	x-x,48-48[BULt];14-14,41-40[AILt]	(((((((..((((((.(((((((&)))))))-))))))-.)))))))	CUUUCCUGAGUUCGCAUGGUAGA&UUUAUUA-GUGAAC-AGGGAAAG	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s707_TRINITY_DN6044_c0_g1_45_TPlot.pdf
TRINITY_DN6044_c0_g1:47	si_s705	TRINITY_DN6044_c0_g1	35	57	47	-31.40	-21.00	0.668789808917198	8.5	1-9,57-49;10-15,47-42;17-21,39-35	x-x,48-48[BULt];16-16,41-40[AILt]	(((((..((((((.(((((((((&)))))))))-))))))-.)))))	UUCCUGAGUUCGCAUGGUAGAUC&GAUUUAUUA-GUGAAC-AGGGAA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN6044_c0_g1_47_TPlot.pdf
TRINITY_DN6044_c0_g2:37	si_s714	TRINITY_DN6044_c0_g2	26	47	37	-31.50	-20.90	0.663492063492063	11.5	1-6,47-42;8-16,39-31	7-7,41-40[AILt];17-21,30-26[UP3]	.....(((((((((..((((((&))))))-.))))))))).....	UGACGGUCUUUCCUGAGUUCGC&GUGAAC-AGGGAAAGAUAUUAU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s714_TRINITY_DN6044_c0_g2_37_TPlot.pdf
TRINITY_DN6044_c0_g2:39	si_s712	TRINITY_DN6044_c0_g2	28	49	39	-32.00	-21.00	0.65625	12.5	3-8,47-42;10-18,39-31	1-2,49-48[UP5];9-9,41-40[AILt];19-21,30-28[UP3]	...(((((((((..((((((..&..))))))-.)))))))))...	ACGGUCUUUCCUGAGUUCGCAU&UAGUGAAC-AGGGAAAGAUAUU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s712_TRINITY_DN6044_c0_g2_39_TPlot.pdf
TRINITY_DN6045_c0_g1:134	si_s690	TRINITY_DN6045_c0_g1	122	143	134	-26.70	-17.60	0.659176029962547	9	1-10,143-134;12-18,131-125	11-11,133-132[AILt];19-21,124-122[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	GAUAUCGACUCUGUUAAACUUA&UGAGUUUAAU-UAGUCGAUUUA	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN6045_c0_g1_134_TPlot.pdf
TRINITY_DN6045_c0_g1:135	si_s689	TRINITY_DN6045_c0_g1	123	144	135	-26.50	-17.60	0.664150943396226	9	2-11,143-134;13-19,131-125	1-1,144-144[UP5];12-12,133-132[AILt];20-21,124-123[UP3]	..(((((((..((((((((((.&.))))))))))-.)))))))..	AUAUCGACUCUGUUAAACUUAC&AUGAGUUUAAU-UAGUCGAUUU	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN6045_c0_g1_135_TPlot.pdf
TRINITY_DN6045_c0_g1:176	si_s116	TRINITY_DN6045_c0_g1	166	183	176	-24.70	-16.10	0.651821862348178	12.5	4-8,180-176;12-21,175-166	1-3,183-181[UP5];9-11,x-x[BULq]	((((((((((---(((((...&...)))))...))))))))))	GCUCUUCUAU---UCUGUGUA&AAAAUAGAAAAAUAGAAGAGU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN6045_c0_g1_176_TPlot.pdf
TRINITY_DN6045_c0_g1:181	si_a480	TRINITY_DN6045_c0_g1	170	190	181	-23.70	-15.60	0.658227848101266	13	5-18,186-173	1-4,190-187[UP5];19-21,172-170[UP3]	...((((((((((((((....&....))))))))))))))...	UUCUAUUCUGUGUAGCAUUUU&UUAUUGUUAUAUAGAAUAUGU	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN6045_c0_g1_181_TPlot.pdf
TRINITY_DN60465_c0_g1:362	si_s72	TRINITY_DN60465_c0_g1	351	372	362	-24.10	-16.10	0.66804979253112	9.5	2-9,371-364;10-11,362-361;13-21,359-351	1-1,372-372[UP5];x-x,363-363[BULt];12-12,360-360[SIL]	(((((((((.((.((((((((.&.))))))))-)).)))))))))	GAGGAGGGACGACAAGAUAGGC&UUCUAUUUU-UUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN60465_c0_g1_362_TPlot.pdf
TRINITY_DN60466_c0_g1:181	si_a326	TRINITY_DN60466_c0_g1	171	190	181	-26.20	-17.20	0.656488549618321	3.5	1-13,190-178;15-20,177-172	14-14,x-x[BULq];21-21,171-171[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	CACGAGG-AUAAAAAAAUUAU&AUGAUUUUUUUAUUCCUUGUC	4	0.99999999999152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN60466_c0_g1_181_TPlot.pdf
TRINITY_DN60473_c0_g1:2571	si_a763	TRINITY_DN60473_c0_g1	2559	2580	2571	-28.80	-18.90	0.65625	8	1-13,2580-2568;16-20,2564-2560	14-15,2567-2565[AILt];21-21,2559-2559[UP3]	.(((((...(((((((((((((&)))))))))))))-..))))).	GGAAUCUUUUUGAGGACCCAAA&UUUGGGUUUUUGA-UUGAUUCA	2	0.999999548991085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN60473_c0_g1_2571_TPlot.pdf
TRINITY_DN60485_c0_g1:493	si_a471	TRINITY_DN60485_c0_g1	481	502	493	-21.10	-14.00	0.663507109004739	5	2-9,501-494;11-14,492-489;15-21,487-481	1-1,502-502[UP5];10-10,493-493[SIL];x-x,488-488[BULt]	(((((((.((((.((((((((.&.)))))))).))))-)))))))	AUAUGACUGAUACUUACAUAUA&AAUAUGUAAUUAUU-GUUAUAU	4	0.999999714470959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN60485_c0_g1_493_TPlot.pdf
TRINITY_DN6049_c0_g1:1019	si_a571	TRINITY_DN6049_c0_g1	1008	1028	1019	-31.20	-22.50	0.721153846153846	6.5	1-5,1028-1024;7-18,1022-1011	6-6,1023-1023[SIL];19-21,1010-1008[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AUGACAGACAUACGAGUCAUG&CGUGAAUCGUAUGUUUGUAAC	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a571_TRINITY_DN6049_c0_g1_1019_TPlot.pdf
TRINITY_DN6049_c0_g1:1021	si_a569	TRINITY_DN6049_c0_g1	1010	1030	1021	-34.20	-22.80	0.666666666666667	7.5	3-7,1028-1024;9-20,1022-1011	1-2,1030-1029[UP5];8-8,1023-1023[SIL];21-21,1010-1010[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	GACAGACAUACGAGUCAUGUC&CCCGUGAAUCGUAUGUUUGUA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN6049_c0_g1_1021_TPlot.pdf
TRINITY_DN6049_c0_g3:1262	si_s692	TRINITY_DN6049_c0_g3	1251	1270	1262	-24.20	-17.70	0.731404958677686	7.5	2-6,1269-1265;8-20,1264-1252	1-1,1270-1270[UP5];7-7,x-x[BULq];21-21,1251-1251[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	UAUAGAUCGGCUAA-UGGACC&AGUUUAAUUAGUCGAUUUAUU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN6049_c0_g3_1262_TPlot.pdf
TRINITY_DN6049_c0_g3:1264	si_s690	TRINITY_DN6049_c0_g3	1253	1271	1264	-26.70	-17.60	0.659176029962547	7	1-2,1271-1270;4-8,1269-1265;10-21,1264-1253	3-3,x-x[BULq];9-9,x-x[BULq]	((((((((((((-(((((-((&)).))))).))))))))))))	UAGAUCGGCUAA-UGGAC-CA&UGAGUUUAAUUAGUCGAUUUA	4	0.99715567632698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN6049_c0_g3_1264_TPlot.pdf
TRINITY_DN6049_c0_g4:450	si_a300	TRINITY_DN6049_c0_g4	439	459	450	-28.20	-18.80	0.666666666666667	11.5	6-20,454-440	1-5,459-455[UP5];21-21,439-439[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAUUCAGGUGAAUCUUAAUUG&UAAAAAAGAUUCGCUUGGAUU	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN6049_c0_g4_450_TPlot.pdf
TRINITY_DN604_c0_g1:518	si_a319	TRINITY_DN604_c0_g1	507	527	518	-22.40	-15.90	0.709821428571429	6	1-12,527-516;14-17,514-511	13-13,515-515[SIL];18-21,510-507[UP3]	....((((.((((((((((((&)))))))))))).))))....	GUCCAAAACAUCAUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999284624946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN604_c0_g1_518_TPlot.pdf
TRINITY_DN604_c0_g1:519	si_a318	TRINITY_DN604_c0_g1	508	528	519	-22.50	-15.90	0.706666666666667	6	2-13,527-516;15-18,514-511	1-1,528-528[UP5];14-14,515-515[SIL];19-21,510-508[UP3]	...((((.((((((((((((.&.)))))))))))).))))...	UCCAAAACAUCAUGGAUGAAA&AUUUAUCCAUGAUUUUUUUAU	4	0.999998657188711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN604_c0_g1_519_TPlot.pdf
TRINITY_DN604_c0_g1:520	si_a317	TRINITY_DN604_c0_g1	509	529	520	-24.30	-15.90	0.654320987654321	7	3-14,527-516;16-19,514-511	1-2,529-528[UP5];15-15,515-515[SIL];20-21,510-509[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	CCAAAACAUCAUGGAUGAAAU&GAUUUAUCCAUGAUUUUUUUA	3	0.999999999958611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN604_c0_g1_520_TPlot.pdf
TRINITY_DN604_c0_g1:662	si_s77	TRINITY_DN604_c0_g1	651	671	662	-25.50	-16.70	0.654901960784314	7	2-16,670-656	1-1,671-671[UP5];17-21,655-651[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUUUAAGGAAAGAGAAAAAU&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN604_c0_g1_662_TPlot.pdf
TRINITY_DN604_c0_g1:664	si_s75	TRINITY_DN604_c0_g1	653	673	664	-24.00	-16.70	0.695833333333333	9	4-18,670-656	1-3,673-671[UP5];19-21,655-653[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUUAAGGAAAGAGAAAAAUGA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN604_c0_g1_664_TPlot.pdf
TRINITY_DN604_c0_g1:665	si_s74	TRINITY_DN604_c0_g1	654	674	665	-25.00	-16.70	0.668	10	5-19,670-656	1-4,674-671[UP5];20-21,655-654[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUAAGGAAAGAGAAAAAUGAU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN604_c0_g1_665_TPlot.pdf
TRINITY_DN604_c0_g1:666	si_s73	TRINITY_DN604_c0_g1	655	675	666	-24.00	-16.70	0.695833333333333	11	6-20,670-656	1-5,675-671[UP5];21-21,655-655[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAAGGAAAGAGAAAAAUGAUU&UCUAUUUUUUUUCUUUCCUUU	2	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN604_c0_g1_666_TPlot.pdf
TRINITY_DN604_c0_g1:667	si_s72	TRINITY_DN604_c0_g1	656	676	667	-24.10	-16.70	0.692946058091286	12	7-21,670-656	1-6,676-671[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGAAAGAGAAAAAUGAUUA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN604_c0_g1_667_TPlot.pdf
TRINITY_DN604_c0_g1:8174	si_s420	TRINITY_DN604_c0_g1	8163	8182	8174	-23.70	-15.70	0.662447257383966	7	2-9,8181-8174;11-18,8173-8166	1-1,8182-8182[UP5];10-10,x-x[BULq];19-21,8165-8163[UP3]	...((((((((-((((((((.&.)))))))).))))))))...	UUCUUGUUAUA-AGAAUGUGG&ACAUAUUCUAUAUAACAAUAA	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s420_TRINITY_DN604_c0_g1_8174_TPlot.pdf
TRINITY_DN604_c0_g1:8283	si_a787	TRINITY_DN604_c0_g1	8271	8295	8283	-26.30	-17.70	0.673003802281369	11.5	1-6,8295-8290;7-17,8286-8276;18-20,8274-8272	x-x,8289-8287[BULt];x-x,8275-8275[BULt];21-21,8271-8271[UP3]	.(((.(((((((((((...((((((&))))))---)))))))))))-))).	GGGAUGAAUAGAGAAAACUUGGAGG&CUUCUA---UUUUUCUAUUU-UCCA	3	0.999999999998013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN604_c0_g1_8283_TPlot.pdf
TRINITY_DN604_c0_g1:8284	si_a786	TRINITY_DN604_c0_g1	8272	8296	8284	-26.60	-18.90	0.710526315789474	10.5	1-7,8296-8290;8-18,8286-8276;19-21,8274-8272	x-x,8289-8287[BULt];x-x,8275-8275[BULt]	(((.(((((((((((...(((((((&)))))))---)))))))))))-)))	GGAUGAAUAGAGAAAACUUGGAGGA&UCUUCUA---UUUUUCUAUUU-UCC	3	0.999992358580222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN604_c0_g1_8284_TPlot.pdf
TRINITY_DN604_c0_g1:8300	si_s809	TRINITY_DN604_c0_g1	8289	8310	8300	-28.50	-18.80	0.659649122807018	9	2-5,8309-8306;7-9,8304-8302;10-18,8300-8292	1-1,8310-8310[UP5];6-6,8305-8305[SIL];x-x,8301-8301[BULt];19-21,8291-8289[UP3]	...(((((((((.(((.((((.&.)))).)))-)))))))))...	UUGGAGGAAAGGCUAAGGAAGG&UCUUCGUUA-CCUUUUCUUAAU	4	0.999999999954861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN604_c0_g1_8300_TPlot.pdf
TRINITY_DN604_c0_g1:8303	si_s807	TRINITY_DN604_c0_g1	8291	8312	8303	-28.90	-18.80	0.650519031141869	11	4-7,8309-8306;9-11,8304-8302;12-20,8300-8292	1-3,8312-8310[UP5];8-8,8305-8305[SIL];x-x,8301-8301[BULt];21-21,8291-8291[UP3]	.(((((((((.(((.((((...&...)))).)))-))))))))).	GGAGGAAAGGCUAAGGAAGGAG&UAUCUUCGUUA-CCUUUUCUUA	4	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN604_c0_g1_8303_TPlot.pdf
TRINITY_DN604_c0_g1:8319	si_a496	TRINITY_DN604_c0_g1	8304	8328	8319	-32.40	-21.20	0.654320987654321	14.5	3-11,8326-8318;12-13,8313-8312;15-21,8310-8304	1-2,8328-8327[UP5];x-x,8317-8314[BULt];14-14,8311-8311[SIL]	(((((((.((....(((((((((..&..)))))))))----)).)))))))	AGGAAGGAGAUUUCGAGACGACAGG&UAUGUCGUUUU----UCGUCUUCCU	4	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN604_c0_g1_8319_TPlot.pdf
TRINITY_DN604_c0_g2:424	si_s191	TRINITY_DN604_c0_g2	413	433	424	-26.60	-19.60	0.736842105263158	12	5-21,429-413	1-4,433-430[UP5]	(((((((((((((((((....&....)))))))))))))))))	UACAUUCCAGAGUGGUUUUCU&UAACGAUUAUUUUGGAAUGUA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN604_c0_g2_424_TPlot.pdf
TRINITY_DN604_c0_g2:590	si_a431	TRINITY_DN604_c0_g2	579	599	590	-34.50	-23.70	0.68695652173913	11.5	5-9,595-591;11-20,589-580	1-4,599-596[UP5];10-10,590-590[SIL];21-21,579-579[UP3]	.((((((((((.(((((....&....))))).)))))))))).	ACAUGUCCAGCCGAUCCAAAG&UAUAGGAUCCGUUGGAUAUGA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN604_c0_g2_590_TPlot.pdf
TRINITY_DN604_c0_g2:591	si_a430	TRINITY_DN604_c0_g2	580	600	591	-33.70	-23.70	0.70326409495549	12	6-10,595-591;12-21,589-580	1-5,600-596[UP5];11-11,590-590[SIL]	((((((((((.(((((.....&.....))))).))))))))))	CAUGUCCAGCCGAUCCAAAGA&AUAUAGGAUCCGUUGGAUAUG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN604_c0_g2_591_TPlot.pdf
TRINITY_DN60506_c0_g1:238	si_a66	TRINITY_DN60506_c0_g1	227	247	238	-26.70	-18.60	0.696629213483146	7.5	2-16,246-232	1-1,247-247[UP5];17-21,231-227[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAUGGUAAUUUGGAAGAAGCC&CGCUUCUUUCAAAUUGUUUUU	2	0.999815947376409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN60506_c0_g1_238_TPlot.pdf
TRINITY_DN6051_c0_g1:306	si_a837	TRINITY_DN6051_c0_g1	295	316	306	-25.80	-16.80	0.651162790697674	11	4-9,313-308;10-19,306-297	1-3,316-314[UP5];x-x,307-307[BULt];20-21,296-295[UP3]	..((((((((((.((((((...&...))))))-))))))))))..	GCUGGCGACUUCAUGUUUUCGA&AAAAAAAUA-GAAGUUGCUAAC	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN6051_c0_g1_306_TPlot.pdf
TRINITY_DN6051_c0_g1:308	si_a836	TRINITY_DN6051_c0_g1	296	317	308	-24.10	-16.80	0.697095435684647	12	5-10,313-308;11-20,306-297	1-4,317-314[UP5];x-x,307-307[BULt];21-21,296-296[UP3]	.((((((((((.((((((....&....))))))-)))))))))).	CUGGCGACUUCAUGUUUUCGAA&AAAAAAAAUA-GAAGUUGCUAA	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN6051_c0_g1_308_TPlot.pdf
TRINITY_DN6051_c7_g1:231	si_a627	TRINITY_DN6051_c7_g1	220	239	231	-29.50	-19.80	0.671186440677966	9	1-7,239-233;10-13,231-228;15-18,226-223	8-9,232-232[AILq];14-14,227-227[SIL];19-21,222-220[UP3]	...((((.((((.-(((((((&)))))))..)))).))))...	ACCAAAUGGACAG-GUACGCC&GGCGUAUUAUGUCGAUUUUUU	4	0.999951258254274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN6051_c7_g1_231_TPlot.pdf
TRINITY_DN60532_c0_g1:4150	si_s618	TRINITY_DN60532_c0_g1	4139	4159	4150	-30.30	-20.10	0.663366336633663	14	6-16,4154-4144	1-5,4159-4155[UP5];17-21,4143-4139[UP3]	.....(((((((((((.....&.....))))))))))).....	UGAGCGAUCGCUUGGAGGGGG&UUAAAUCCAAGCGAUCUUUUC	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN60532_c0_g1_4150_TPlot.pdf
TRINITY_DN60532_c0_g1:4151	si_s617	TRINITY_DN60532_c0_g1	4140	4160	4151	-28.30	-20.10	0.710247349823322	15	7-17,4154-4144	1-6,4160-4155[UP5];18-21,4143-4140[UP3]	....(((((((((((......&......)))))))))))....	GAGCGAUCGCUUGGAGGGGGC&UUUAAAUCCAAGCGAUCUUUU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN60532_c0_g1_4151_TPlot.pdf
TRINITY_DN60532_c0_g1:4154	si_s614	TRINITY_DN60532_c0_g1	4143	4163	4154	-28.30	-20.10	0.710247349823322	18	10-20,4154-4144	1-9,4163-4155[UP5];21-21,4143-4143[UP3]	.(((((((((((.........&.........))))))))))).	CGAUCGCUUGGAGGGGGCGGC&UUUUUUAAAUCCAAGCGAUCU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN60532_c0_g1_4154_TPlot.pdf
TRINITY_DN60532_c0_g1:4292	si_a741	TRINITY_DN60532_c0_g1	4282	4301	4292	-42.60	-29.40	0.690140845070423	8	2-8,4300-4294;10-16,4292-4286;18-20,4285-4283	1-1,4301-4301[UP5];9-9,4293-4293[SIL];17-17,x-x[BULq];21-21,4282-4282[UP3]	.(((-(((((((.(((((((.&.))))))).))))))).))).	AAGG-UCAUGGUGGGGGGUGU&UUACCCCUGGCCAUGAACCUC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a741_TRINITY_DN60532_c0_g1_4292_TPlot.pdf
TRINITY_DN60532_c0_g1:4303	si_s240	TRINITY_DN60532_c0_g1	4292	4312	4303	-36.60	-24.80	0.677595628415301	9	2-2,4311-4311;5-21,4308-4292	1-1,4312-4312[UP5];3-4,4310-4309[SIL]	(((((((((((((((((..(.&.)..)))))))))))))))))	UGGGGGGUGUCUGUUGACGCA&GGAAUCAAUAGGCAUUUCCCG	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s240_TRINITY_DN60532_c0_g1_4303_TPlot.pdf
TRINITY_DN6053_c2_g2:1126	si_s509	TRINITY_DN6053_c2_g2	1116	1135	1126	-22.80	-15.40	0.675438596491228	7	3-10,1133-1126;12-20,1125-1117	1-2,1135-1134[UP5];11-11,x-x[BULq];21-21,1116-1116[UP3]	.(((((((((-((((((((..&..)))))))).))))))))).	UAUUGGGAAU-UAGAAUUGGA&AACAAUUCUAUAUUCUUAAUU	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN6053_c2_g2_1126_TPlot.pdf
TRINITY_DN6053_c2_g2:1127	si_s508	TRINITY_DN6053_c2_g2	1117	1136	1127	-22.80	-15.40	0.675438596491228	8	4-11,1133-1126;13-21,1125-1117	1-3,1136-1134[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	AUUGGGAAU-UAGAAUUGGAU&AAACAAUUCUAUAUUCUUAAU	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN6053_c2_g2_1127_TPlot.pdf
TRINITY_DN6053_c2_g2:965	si_a70	TRINITY_DN6053_c2_g2	954	974	965	-23.90	-19.50	0.815899581589958	4	1-11,974-964;14-21,961-954	12-13,963-962[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GGUGAAAAUAAAUUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6053_c2_g2_965_TPlot.pdf
TRINITY_DN6053_c2_g2:966	si_a69	TRINITY_DN6053_c2_g2	955	975	966	-24.00	-19.40	0.808333333333333	3	1-12,975-964;15-21,961-955	13-14,963-962[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GUGAAAAUAAAUUUGAAAGAG&UUCUUUCAAAUUGUUUUUCAU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN6053_c2_g2_966_TPlot.pdf
TRINITY_DN60555_c0_g1:84	si_s93	TRINITY_DN60555_c0_g1	74	93	84	-34.80	-24.70	0.709770114942529	5	1-10,93-84;12-19,83-76	11-11,x-x[BULq];20-21,75-74[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	AUUUCGAGGC-AAGAAGAAGA&UCUUCUUCUUCGCUUCGGAUU	2	0.994287804141701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN60555_c0_g1_84_TPlot.pdf
TRINITY_DN60555_c0_g1:87	si_s90	TRINITY_DN60555_c0_g1	77	96	87	-35.30	-25.20	0.713881019830028	3	2-13,95-84;15-21,83-77	1-1,96-96[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UCGAGGC-AAGAAGAAGAAAA&CUUUCUUCUUCUUCGCUUCGG	4	0.999968403500945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN60555_c0_g1_87_TPlot.pdf
TRINITY_DN6055_c0_g2:88	si_s66	TRINITY_DN6055_c0_g2	77	97	88	-26.30	-17.20	0.653992395437262	9.5	2-4,96-94;6-6,92-92;9-21,89-77	1-1,97-97[UP5];5-5,93-93[SIL];7-8,91-90[SIL]	(((((((((((((..(.(((.&.))).)..)))))))))))))	GGAAGAAGAAUGGUUGAUGCC&AGCAACUUCUAUUUUUUUUCU	4	0.999999999949954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN6055_c0_g2_88_TPlot.pdf
TRINITY_DN60561_c0_g1:1482	si_s93	TRINITY_DN60561_c0_g1	1470	1491	1482	-34.80	-24.00	0.689655172413793	6	1-10,1491-1482;13-17,1479-1475;18-21,1473-1470	11-12,1481-1480[SIL];x-x,1474-1474[BULt]	((((.(((((..((((((((((&))))))))))..)))))-))))	AAUCACGAAGGAAGGAAGAAGA&UCUUCUUCUUCGCUUCG-GAUU	4	0.999998929956348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN60561_c0_g1_1482_TPlot.pdf
TRINITY_DN6056_c0_g1:2083	si_a531	TRINITY_DN6056_c0_g1	2070	2094	2083	-42.00	-27.60	0.657142857142857	9	1-4,2094-2091;5-12,2088-2081;13-18,2079-2074;19-20,2072-2071	x-x,2090-2089[BULt];x-x,2080-2080[BULt];x-x,2073-2073[BULt];21-21,2070-2070[UP3]	.((.((((((.((((((((..((((&))))--))))))))-))))))-)).	GGACGCCGAUACGCUCGCGGCUGUU&GACA--CGCGAGCG-AUCGGU-UCA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a531_TRINITY_DN6056_c0_g1_2083_TPlot.pdf
TRINITY_DN6056_c0_g1:3654	si_s161	TRINITY_DN6056_c0_g1	3643	3663	3654	-41.50	-27.40	0.660240963855422	10	1-3,3663-3661;5-15,3659-3649	4-4,3660-3660[SIL];16-21,3648-3643[UP3]	......(((((((((((.(((&))).)))))))))))......	AGCUGACCCUGGCUAUGUGCC&GGUUCAUGGCCAGGGGUAAAG	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN6056_c0_g1_3654_TPlot.pdf
TRINITY_DN6056_c0_g1:3655	si_s160	TRINITY_DN6056_c0_g1	3644	3664	3655	-40.60	-28.80	0.70935960591133	9	1-4,3664-3661;6-16,3659-3649	5-5,3660-3660[SIL];17-21,3648-3644[UP3]	.....(((((((((((.((((&)))).))))))))))).....	GCUGACCCUGGCUAUGUGCCU&AGGUUCAUGGCCAGGGGUAAA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN6056_c0_g1_3655_TPlot.pdf
TRINITY_DN6056_c0_g1:3656	si_s159	TRINITY_DN6056_c0_g1	3645	3665	3656	-42.60	-29.20	0.685446009389671	9	2-5,3664-3661;7-17,3659-3649	1-1,3665-3665[UP5];6-6,3660-3660[SIL];18-21,3648-3645[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	CUGACCCUGGCUAUGUGCCUG&GAGGUUCAUGGCCAGGGGUAA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN6056_c0_g1_3656_TPlot.pdf
TRINITY_DN6056_c0_g1:3657	si_s158	TRINITY_DN6056_c0_g1	3646	3666	3657	-44.90	-29.50	0.657015590200445	9.5	1-1,3666-3666;3-6,3664-3661;8-18,3659-3649	2-2,3665-3665[SIL];7-7,3660-3660[SIL];19-21,3648-3646[UP3]	...(((((((((((.((((.(&).)))).)))))))))))...	UGACCCUGGCUAUGUGCCUGU&GGAGGUUCAUGGCCAGGGGUA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN6056_c0_g1_3657_TPlot.pdf
TRINITY_DN6056_c0_g1:3658	si_s157	TRINITY_DN6056_c0_g1	3647	3667	3658	-45.20	-29.70	0.657079646017699	10	2-2,3666-3666;4-7,3664-3661;9-19,3659-3649	1-1,3667-3667[UP5];3-3,3665-3665[SIL];8-8,3660-3660[SIL];20-21,3648-3647[UP3]	..(((((((((((.((((.(.&.).)))).)))))))))))..	GACCCUGGCUAUGUGCCUGUA&AGGAGGUUCAUGGCCAGGGGU	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN6056_c0_g1_3658_TPlot.pdf
TRINITY_DN6056_c0_g1:3659	si_s156	TRINITY_DN6056_c0_g1	3648	3668	3659	-44.40	-29.70	0.668918918918919	10.5	3-3,3666-3666;5-8,3664-3661;10-20,3659-3649	1-2,3668-3667[UP5];4-4,3665-3665[SIL];9-9,3660-3660[SIL];21-21,3648-3648[UP3]	.(((((((((((.((((.(..&..).)))).))))))))))).	ACCCUGGCUAUGUGCCUGUAC&AAGGAGGUUCAUGGCCAGGGG	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s156_TRINITY_DN6056_c0_g1_3659_TPlot.pdf
TRINITY_DN6056_c0_g1:3739	si_a303	TRINITY_DN6056_c0_g1	3728	3750	3739	-28.40	-18.60	0.654929577464789	12.5	2-7,3749-3744;8-16,3741-3733	1-1,3750-3750[UP5];x-x,3743-3742[BULt];17-21,3732-3728[UP3]	.....(((((((((..((((((.&.))))))--))))))))).....	UCUUCUCCGGGCGAUUGUCUUUG&AAAAGAU--UCGCUUGGAUUUAU	4	0.999998861596865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN6056_c0_g1_3739_TPlot.pdf
TRINITY_DN6056_c0_g1:3740	si_a302	TRINITY_DN6056_c0_g1	3729	3751	3740	-28.20	-18.60	0.659574468085106	13	3-8,3749-3744;9-17,3741-3733	1-2,3751-3750[UP5];x-x,3743-3742[BULt];18-21,3732-3729[UP3]	....(((((((((..((((((..&..))))))--)))))))))....	CUUCUCCGGGCGAUUGUCUUUGC&AAAAAGAU--UCGCUUGGAUUUA	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN6056_c0_g1_3740_TPlot.pdf
TRINITY_DN6056_c0_g1:3741	si_a301	TRINITY_DN6056_c0_g1	3730	3752	3741	-27.80	-18.60	0.669064748201439	14	4-9,3749-3744;10-18,3741-3733	1-3,3752-3750[UP5];x-x,3743-3742[BULt];19-21,3732-3730[UP3]	...(((((((((..((((((...&...))))))--)))))))))...	UUCUCCGGGCGAUUGUCUUUGCC&AAAAAAGAU--UCGCUUGGAUUU	2	0.997915632487503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN6056_c0_g1_3741_TPlot.pdf
TRINITY_DN6056_c0_g1:3744	si_a300	TRINITY_DN6056_c0_g1	3731	3753	3744	-28.20	-18.60	0.659574468085106	15	5-10,3749-3744;11-19,3741-3733	1-4,3753-3750[UP5];x-x,3743-3742[BULt];20-21,3732-3731[UP3]	..(((((((((..((((((....&....))))))--)))))))))..	UCUCCGGGCGAUUGUCUUUGCCG&UAAAAAAGAU--UCGCUUGGAUU	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN6056_c0_g1_3744_TPlot.pdf
TRINITY_DN6056_c0_g1:3745	si_a299	TRINITY_DN6056_c0_g1	3732	3754	3745	-28.30	-18.60	0.657243816254417	16	6-11,3749-3744;12-20,3741-3733	1-5,3754-3750[UP5];x-x,3743-3742[BULt];21-21,3732-3732[UP3]	.(((((((((..((((((.....&.....))))))--))))))))).	CUCCGGGCGAUUGUCUUUGCCGU&UUAAAAAAGAU--UCGCUUGGAU	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN6056_c0_g1_3745_TPlot.pdf
TRINITY_DN6056_c0_g1:3746	si_a298	TRINITY_DN6056_c0_g1	3733	3755	3746	-28.10	-18.50	0.658362989323843	17	7-12,3749-3744;13-21,3741-3733	1-6,3755-3750[UP5];x-x,3743-3742[BULt]	(((((((((..((((((......&......))))))--)))))))))	UCCGGGCGAUUGUCUUUGCCGUG&UUUAAAAAAGAU--UCGCUUGGA	2	0.943587266821235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN6056_c0_g1_3746_TPlot.pdf
TRINITY_DN60586_c0_g1:1225	si_a499	TRINITY_DN60586_c0_g1	1214	1234	1225	-35.20	-23.50	0.667613636363636	10.5	2-6,1233-1229;9-10,1226-1225;12-20,1223-1215	1-1,1234-1234[UP5];7-8,1228-1227[SIL];11-11,1224-1224[SIL];21-21,1214-1214[UP3]	.(((((((((.((..(((((.&.)))))..)).))))))))).	UCAAGGAGGAGGAUUGGCGAA&GUCGUUUUUCGUCUUCCUUGG	3	0.9999999995108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN60586_c0_g1_1225_TPlot.pdf
TRINITY_DN60593_c0_g1:521	si_s612	TRINITY_DN60593_c0_g1	509	530	521	-28.20	-18.90	0.670212765957447	7	3-13,528-518;14-19,516-511	1-2,530-529[UP5];x-x,517-517[BULt];20-21,510-509[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	GACGCUUGCGAUUUAGAAAAUA&UCUUUUUUAAAUC-CAAGCGAU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN60593_c0_g1_521_TPlot.pdf
TRINITY_DN605_c0_g1:472	si_a665	TRINITY_DN605_c0_g1	462	481	472	-29.60	-21.70	0.733108108108108	5.5	1-11,481-471;13-17,470-466;20-21,463-462	12-12,x-x[BULq];18-19,465-464[SIL]	((..(((((-(((((((((((&))))))))))).)))))..))	AAGUAGGAG-CGAUAGGCAUU&AAUGCCUAUUGAUUCCUUAUU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN605_c0_g1_472_TPlot.pdf
TRINITY_DN605_c0_g1:620	si_a789	TRINITY_DN605_c0_g1	608	629	620	-24.80	-16.80	0.67741935483871	7	1-3,629-627;5-13,625-617;15-21,614-608	4-4,626-626[SIL];14-14,616-615[AILt]	(((((((..(((((((((.(((&))).)))))))))-.)))))))	AUUGGAGUUGUAGAAGGAAAGA&UCUAUUUUUCUAU-UUUCCAAU	4	0.999999999439905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN605_c0_g1_620_TPlot.pdf
TRINITY_DN60603_c0_g1:745	si_a611	TRINITY_DN60603_c0_g1	734	754	745	-36.40	-25.28	0.694505494505495	8.5	1-9,754-746;13-21,742-734	10-12,745-743[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	GCGUCUGGUAAUUUGGAGUUG&CAAUUCCAAUCGACUAGGCGU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN60603_c0_g1_745_TPlot.pdf
TRINITY_DN6060_c1_g1:2392	si_a154	TRINITY_DN6060_c1_g1	2379	2401	2392	-27.00	-18.10	0.67037037037037	10	1-4,2401-2398;6-11,2396-2391;12-20,2388-2380	5-5,2397-2397[SIL];x-x,2390-2389[BULt];21-21,2379-2379[UP3]	.(((((((((..((((((.((((&)))).))))))--))))))))).	CGUAGGUUGAUACCUUGACGCAA&UUGUUUUAAGG--UCAAUCUAUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN6060_c1_g1_2392_TPlot.pdf
TRINITY_DN6060_c1_g1:2393	si_a153	TRINITY_DN6060_c1_g1	2380	2402	2393	-28.70	-19.70	0.686411149825784	9.5	1-5,2402-2398;7-12,2396-2391;13-21,2388-2380	6-6,2397-2397[SIL];x-x,2390-2389[BULt]	(((((((((..((((((.(((((&))))).))))))--)))))))))	GUAGGUUGAUACCUUGACGCAAU&GUUGUUUUAAGG--UCAAUCUAU	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN6060_c1_g1_2393_TPlot.pdf
TRINITY_DN6060_c1_g1:2394	si_a152	TRINITY_DN6060_c1_g1	2381	2403	2394	-29.20	-19.30	0.660958904109589	7.5	1-6,2403-2398;8-13,2396-2391;14-21,2388-2381	7-7,2397-2397[SIL];x-x,2390-2389[BULt]	((((((((..((((((.((((((&)))))).))))))--))))))))	UAGGUUGAUACCUUGACGCAAUA&UGUUGUUUUAAGG--UCAAUCUA	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN6060_c1_g1_2394_TPlot.pdf
TRINITY_DN60610_c0_g1:777	si_s649	TRINITY_DN60610_c0_g1	769	786	777	-43.80	-29.52	0.673972602739726	7	1-11,786-776;17-20,773-770	12-16,775-774[AILq];21-21,769-769[UP3]	.((((..---(((((((((((&))))))))))).....)))).	GCCCCAA---GUAUCGAGGGC&GCCCUCGAUACAAUCGGGGGA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN60610_c0_g1_777_TPlot.pdf
TRINITY_DN60610_c0_g1:784	si_s642	TRINITY_DN60610_c0_g1	773	792	784	-38.60	-27.00	0.699481865284974	9	2-3,791-790;5-18,789-776	1-1,792-792[UP5];4-4,x-x[BULq];19-21,775-773[UP3]	...((((((((((((((-((.&.)).))))))))))))))...	CAAGUAUCGAGGGCGGG-GCG&GGCGUUUGCCCUCGAUACAAU	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN60610_c0_g1_784_TPlot.pdf
TRINITY_DN6062_c0_g2:2848	si_s69	TRINITY_DN6062_c0_g2	2825	2857	2848	-23.40	-16.10	0.688034188034188	14.5	2-15,2856-2843;16-21,2830-2825	1-1,2857-2857[UP5];x-x,2842-2831[BULt]	((((((............((((((((((((((.&.))))))))))))))------------))))))	GAAAGAAAACAUCGCGAUGAAAAAAUGGAAGUG&AACUUCUAUUUUUUU------------UCUUUC	2	0.999999999999784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6062_c0_g2_2848_TPlot.pdf
TRINITY_DN6062_c0_g2:2917	si_s77	TRINITY_DN6062_c0_g2	2906	2926	2917	-25.50	-16.80	0.658823529411765	4.5	1-3,2926-2924;5-13,2922-2914;15-21,2912-2906	4-4,2923-2923[SIL];14-14,2913-2913[SIL]	(((((((.(((((((((.(((&))).))))))))).)))))))	GAGGAAAAGAAAGAAGACAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6062_c0_g2_2917_TPlot.pdf
TRINITY_DN6062_c0_g2:948	si_s898	TRINITY_DN6062_c0_g2	937	957	948	-30.70	-21.60	0.703583061889251	9	1-12,957-946	13-21,945-937[UP3]	.........((((((((((((&)))))))))))).........	UCACUAUUGGAAGAGAAAGCC&GGCUUUCUCUUCAAUUUCAAU	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN6062_c0_g2_948_TPlot.pdf
TRINITY_DN6062_c0_g2:949	si_s897	TRINITY_DN6062_c0_g2	938	958	949	-31.30	-21.70	0.693290734824281	9	2-13,957-946	1-1,958-958[UP5];14-21,945-938[UP3]	........((((((((((((.&.))))))))))))........	CACUAUUGGAAGAGAAAGCCA&AGGCUUUCUCUUCAAUUUCAA	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN6062_c0_g2_949_TPlot.pdf
TRINITY_DN6062_c0_g2:952	si_s894	TRINITY_DN6062_c0_g2	941	961	952	-29.10	-21.70	0.745704467353952	12	5-16,957-946	1-4,961-958[UP5];17-21,945-941[UP3]	.....((((((((((((....&....)))))))))))).....	UAUUGGAAGAGAAAGCCAAAC&AAUAGGCUUUCUCUUCAAUUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6062_c0_g2_952_TPlot.pdf
TRINITY_DN6062_c0_g2:955	si_s891	TRINITY_DN6062_c0_g2	944	964	955	-29.60	-21.70	0.733108108108108	15	8-19,957-946	1-7,964-958[UP5];20-21,945-944[UP3]	..((((((((((((.......&.......))))))))))))..	UGGAAGAGAAAGCCAAACCUA&AUAAAUAGGCUUUCUCUUCAA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN6062_c0_g2_955_TPlot.pdf
TRINITY_DN60635_c0_g1:49	si_a314	TRINITY_DN60635_c0_g1	38	58	49	-27.10	-21.50	0.793357933579336	5	1-12,58-47;14-21,45-38	13-13,46-46[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGAAAUUAGGGAUGAGUCCGA&UUGGAUUUAUCCAUGAUUUUU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN60635_c0_g1_49_TPlot.pdf
TRINITY_DN6063_c0_g1:1173	si_s68	TRINITY_DN6063_c0_g1	1159	1182	1173	-23.10	-15.80	0.683982683982684	6.5	3-13,1180-1170;14-21,1166-1159	1-2,1182-1181[UP5];x-x,1169-1167[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	AAGGAAAAAUUAAAAUAGAAGUAU&CAACUUCUAUUUU---UUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6063_c0_g1_1173_TPlot.pdf
TRINITY_DN6063_c0_g1:1642	si_s526	TRINITY_DN6063_c0_g1	1631	1651	1642	-25.60	-17.50	0.68359375	9	4-15,1648-1637;17-20,1635-1632	1-3,1651-1649[UP5];16-16,1636-1636[SIL];21-21,1631-1631[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	CGUCAUAAGUGGUUUCGACAU&AAUUCGAAAUCAUUUUUGAUC	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN6063_c0_g1_1642_TPlot.pdf
TRINITY_DN6063_c0_g1:1975	si_a862	TRINITY_DN6063_c0_g1	1964	1984	1975	-22.70	-14.90	0.656387665198238	9	4-8,1981-1977;10-20,1975-1965	1-3,1984-1982[UP5];9-9,1976-1976[SIL];21-21,1964-1964[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CGGAUCUUUAAUCAUUGGUGG&AAUCCAAUUAUUAAAGAUUUA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN6063_c0_g1_1975_TPlot.pdf
TRINITY_DN6063_c0_g1:2060	si_s770	TRINITY_DN6063_c0_g1	2049	2066	2060	-26.60	-17.40	0.654135338345865	11	2-5,2065-2062;9-20,2061-2050	1-1,2066-2066[UP5];6-8,x-x[BULq];21-21,2049-2049[UP3]	.((((((((((((---((((.&.))))...)))))))))))).	GGUAGCAGUAGUG---GAUCU&CGAUUAAUUACUAUUGCUAUA	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN6063_c0_g1_2060_TPlot.pdf
TRINITY_DN6063_c0_g1:2209	si_a862	TRINITY_DN6063_c0_g1	2198	2218	2209	-22.70	-14.90	0.656387665198238	9	4-8,2215-2211;10-20,2209-2199	1-3,2218-2216[UP5];9-9,2210-2210[SIL];21-21,2198-2198[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CGGAUCUUUAAUCAUUGGUGG&AAUCCAAUUAUUAAAGAUUUA	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN6063_c0_g1_2209_TPlot.pdf
TRINITY_DN6063_c0_g1:2250	si_s772	TRINITY_DN6063_c0_g1	2239	2259	2250	-23.20	-15.10	0.650862068965517	15	5-16,2255-2244	1-4,2259-2256[UP5];17-21,2243-2239[UP3]	.....((((((((((((....&....)))))))))))).....	CUGGAAGCAGUAGUGGUGGAU&AUUAAUUACUAUUGCUAUAAA	3	0.999999967025317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN6063_c0_g1_2250_TPlot.pdf
TRINITY_DN6063_c0_g1:2251	si_s771	TRINITY_DN6063_c0_g1	2240	2260	2251	-25.20	-18.40	0.73015873015873	9.5	1-4,2260-2257;6-17,2255-2244	5-5,2256-2256[SIL];18-21,2243-2240[UP3]	....((((((((((((.((((&)))).))))))))))))....	UGGAAGCAGUAGUGGUGGAUC&GAUUAAUUACUAUUGCUAUAA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN6063_c0_g1_2251_TPlot.pdf
TRINITY_DN6063_c0_g1:2252	si_s770	TRINITY_DN6063_c0_g1	2241	2261	2252	-26.60	-18.80	0.706766917293233	9.5	2-5,2260-2257;7-18,2255-2244	1-1,2261-2261[UP5];6-6,2256-2256[SIL];19-21,2243-2241[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	GGAAGCAGUAGUGGUGGAUCU&CGAUUAAUUACUAUUGCUAUA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN6063_c0_g1_2252_TPlot.pdf
TRINITY_DN6063_c0_g1:2254	si_s768	TRINITY_DN6063_c0_g1	2243	2263	2254	-26.80	-18.80	0.701492537313433	11.5	4-7,2260-2257;9-20,2255-2244	1-3,2263-2261[UP5];8-8,2256-2256[SIL];21-21,2243-2243[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	AAGCAGUAGUGGUGGAUCUGC&AACGAUUAAUUACUAUUGCUA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN6063_c0_g1_2254_TPlot.pdf
TRINITY_DN6063_c0_g1:2255	si_s767	TRINITY_DN6063_c0_g1	2244	2264	2255	-28.10	-18.50	0.658362989323843	12.5	5-8,2260-2257;10-21,2255-2244	1-4,2264-2261[UP5];9-9,2256-2256[SIL]	((((((((((((.((((....&....)))).))))))))))))	AGCAGUAGUGGUGGAUCUGCA&CAACGAUUAAUUACUAUUGCU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s767_TRINITY_DN6063_c0_g1_2255_TPlot.pdf
TRINITY_DN6063_c0_g1:2294	si_s773	TRINITY_DN6063_c0_g1	2283	2303	2294	-23.10	-15.10	0.653679653679654	13	3-15,2301-2289	1-2,2303-2302[UP5];16-21,2288-2283[UP3]	......(((((((((((((..&..)))))))))))))......	GGCGGAAGCAGUGGUGGUUCU&UUAAUUACUAUUGCUAUAAAA	2	0.999956012099885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN6063_c0_g1_2294_TPlot.pdf
TRINITY_DN6063_c0_g1:2439	si_a20	TRINITY_DN6063_c0_g1	2429	2449	2439	-26.70	-17.60	0.659176029962547	10.5	1-2,2449-2448;3-10,2446-2439;13-21,2437-2429	x-x,2447-2447[BULt];11-12,2438-2438[AILq]	(((((((((.-((((((((.((&))-))))))))..)))))))))	UGGAACUGGU-AUAGGUGGUGC&GC-CUAUUUAUUUUUAGUUCUA	3	0.999999943041421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN6063_c0_g1_2439_TPlot.pdf
TRINITY_DN6063_c0_g1:684	si_a443	TRINITY_DN6063_c0_g1	675	693	684	-30.00	-19.68	0.656	8	1-12,693-682;17-20,679-676	13-16,681-680[AILq];21-21,675-675[UP3]	.((((..--((((((((((((&))))))))))))....)))).	GUAGCUG--GUCUCAUGUCCA&UGGAUAUGAGAUAAUUGUUGU	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN6063_c0_g1_684_TPlot.pdf
TRINITY_DN6063_c0_g2:3074	si_a303	TRINITY_DN6063_c0_g2	3063	3083	3074	-28.40	-20.90	0.735915492957746	7	3-19,3081-3065	1-2,3083-3082[UP5];20-21,3064-3063[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAAUUUAAGCGAGUCUUCU&AAAAGAUUCGCUUGGAUUUAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN6063_c0_g2_3074_TPlot.pdf
TRINITY_DN6063_c0_g2:3075	si_a302	TRINITY_DN6063_c0_g2	3064	3084	3075	-28.20	-20.90	0.74113475177305	8	4-20,3081-3065	1-3,3084-3082[UP5];21-21,3064-3064[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAAUUUAAGCGAGUCUUCUA&AAAAAGAUUCGCUUGGAUUUA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN6063_c0_g2_3075_TPlot.pdf
TRINITY_DN6063_c0_g2:3076	si_a301	TRINITY_DN6063_c0_g2	3065	3085	3076	-27.80	-20.60	0.741007194244604	9	5-21,3081-3065	1-4,3085-3082[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAUUUAAGCGAGUCUUCUAU&AAAAAAGAUUCGCUUGGAUUU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN6063_c0_g2_3076_TPlot.pdf
TRINITY_DN6063_c0_g2:3077	si_a300	TRINITY_DN6063_c0_g2	3066	3086	3077	-28.20	-19.70	0.698581560283688	11	6-21,3081-3066	1-5,3086-3082[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUUUAAGCGAGUCUUCUAUU&UAAAAAAGAUUCGCUUGGAUU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN6063_c0_g2_3077_TPlot.pdf
TRINITY_DN6063_c1_g1:1462	si_a401	TRINITY_DN6063_c1_g1	1451	1471	1462	-22.60	-17.00	0.752212389380531	7.5	1-15,1471-1457;17-21,1455-1451	16-16,1456-1456[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AUGUAUACAGGAUGGUUCUGU&AUAGAAUUGUUUUGUUUAUAU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN6063_c1_g1_1462_TPlot.pdf
TRINITY_DN6063_c1_g1:1734	si_s39	TRINITY_DN6063_c1_g1	1722	1744	1734	-22.30	-14.50	0.650224215246637	7.5	3-8,1742-1737;9-14,1735-1730;15-21,1728-1722	1-2,1744-1743[UP5];x-x,1736-1736[BULt];x-x,1729-1729[BULt]	(((((((.((((((.((((((..&..))))))-))))))-)))))))	GGAUCCAGGUUAUUCAAAGAUGG&AAAUCUUU-AAUAAU-UGGAUUU	2	0.999944966324608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN6063_c1_g1_1734_TPlot.pdf
TRINITY_DN6063_c1_g1:852	si_s79	TRINITY_DN6063_c1_g1	838	861	852	-26.20	-17.30	0.66030534351145	10.5	2-8,860-854;11-17,851-845;18-21,841-838	1-1,861-861[UP5];9-10,853-852[SIL];x-x,844-842[BULt]	((((...(((((((..(((((((.&.)))))))..)))))))---))))	GAGAGCUAGAAAGGUUAGAGAAGG&UUUUUUCUUUCCUUUCU---UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6063_c1_g1_852_TPlot.pdf
TRINITY_DN6063_c1_g1:853	si_s78	TRINITY_DN6063_c1_g1	839	862	853	-26.20	-17.80	0.679389312977099	10	1-9,862-854;12-18,851-845;19-21,841-839	10-11,853-852[SIL];x-x,844-842[BULt]	(((...(((((((..(((((((((&)))))))))..)))))))---)))	AGAGCUAGAAAGGUUAGAGAAGGA&UUUUUUUCUUUCCUUUCU---UCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6063_c1_g1_853_TPlot.pdf
TRINITY_DN6063_c1_g1:857	si_s76	TRINITY_DN6063_c1_g1	844	866	857	-23.60	-18.20	0.771186440677966	7	1-13,866-854;14-20,851-845	x-x,853-852[BULt];21-21,844-844[UP3]	.(((((((..(((((((((((((&)))))))))))))--))))))).	UAGAAAGGUUAGAGAAGGAGAAU&AUUUUUUUUCUUU--CCUUUCUU	3	0.999999999984337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6063_c1_g1_857_TPlot.pdf
TRINITY_DN6063_c1_g1:862	si_s71	TRINITY_DN6063_c1_g1	849	872	862	-25.70	-17.00	0.66147859922179	8.5	1-5,872-868;6-18,866-854;19-21,851-849	x-x,867-867[BULt];x-x,853-852[BULt]	(((..(((((((((((((.(((((&)))))-)))))))))))))--)))	AGGUUAGAGAAGGAGAAUAAGGAG&CUUCU-AUUUUUUUUCUUU--CCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6063_c1_g1_862_TPlot.pdf
TRINITY_DN6063_c1_g1:866	si_s67	TRINITY_DN6063_c1_g1	855	876	866	-25.60	-19.90	0.77734375	6	2-9,875-868;10-21,866-855	1-1,876-876[UP5];x-x,867-867[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	GAGAAGGAGAAUAAGGAGUUGA&GCAACUUCU-AUUUUUUUUCUU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6063_c1_g1_866_TPlot.pdf
TRINITY_DN6063_c1_g1:868	si_s66	TRINITY_DN6063_c1_g1	856	877	868	-26.30	-18.80	0.714828897338403	7.5	3-10,875-868;11-21,866-856	1-2,877-876[UP5];x-x,867-867[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	AGAAGGAGAAUAAGGAGUUGAG&AGCAACUUCU-AUUUUUUUUCU	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN6063_c1_g1_868_TPlot.pdf
TRINITY_DN60641_c0_g1:212	si_s72	TRINITY_DN60641_c0_g1	202	221	212	-24.10	-20.00	0.829875518672199	5	2-16,220-206;18-21,205-202	1-1,221-221[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	AAGG-AAGAGAAGAAGUAGAC&UUCUAUUUUUUUUCUUUCCUU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN60641_c0_g1_212_TPlot.pdf
TRINITY_DN60643_c0_g1:1121	si_a456	TRINITY_DN60643_c0_g1	1109	1130	1121	-22.80	-15.00	0.657894736842105	7	2-11,1129-1120;12-20,1118-1110	1-1,1130-1130[UP5];x-x,1119-1119[BULt];21-21,1109-1109[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AAUAUUGUGUAAUAAUAACGAA&AUUGUUGUUAU-AUAUAAUAUG	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN60643_c0_g1_1121_TPlot.pdf
TRINITY_DN60643_c0_g1:183	si_s649	TRINITY_DN60643_c0_g1	175	192	183	-43.80	-29.80	0.680365296803653	7	1-7,192-186;9-11,184-182;15-20,181-176	8-8,185-185[SIL];12-14,x-x[BULq];21-21,175-175[UP3]	.((((((---(((.(((((((&))))))).)))...)))))).	GCCCCCG---GUAACGAGGGC&GCCCUCGAUACAAUCGGGGGA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN60643_c0_g1_183_TPlot.pdf
TRINITY_DN60643_c0_g1:534	si_s321	TRINITY_DN60643_c0_g1	523	542	534	-31.00	-20.40	0.658064516129032	9	1-9,542-534;13-14,531-530;16-21,528-523	10-12,533-532[AILq];15-15,529-529[SIL]	((((((.((..-(((((((((&)))))))))...)).))))))	GUAUGUAUGGU-CGAGGAGGA&UCCUUCUUGUUACAAACAUAC	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN60643_c0_g1_534_TPlot.pdf
TRINITY_DN6064_c0_g1:1005	si_a768	TRINITY_DN6064_c0_g1	991	1015	1005	-28.40	-20.20	0.711267605633803	8	1-7,1015-1009;8-16,1007-999;17-20,995-992	x-x,1008-1008[BULt];x-x,998-996[BULt];21-21,991-991[UP3]	.((((...(((((((((.(((((((&)))))))-)))))))))---)))).	CGAGUAUCUGAAUCAGUACAAGAAC&GUUUUUG-AUUGAUUCA---ACUCU	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN6064_c0_g1_1005_TPlot.pdf
TRINITY_DN6064_c0_g1:1006	si_a767	TRINITY_DN6064_c0_g1	992	1016	1006	-30.10	-23.80	0.790697674418605	7	1-8,1016-1009;9-17,1007-999;18-21,995-992	x-x,1008-1008[BULt];x-x,998-996[BULt]	((((...(((((((((.((((((((&))))))))-)))))))))---))))	GAGUAUCUGAAUCAGUACAAGAACC&GGUUUUUG-AUUGAUUCA---ACUC	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN6064_c0_g1_1006_TPlot.pdf
TRINITY_DN6064_c0_g1:1007	si_a766	TRINITY_DN6064_c0_g1	996	1017	1007	-30.50	-20.90	0.685245901639344	8	2-9,1016-1009;10-18,1007-999	1-1,1017-1017[UP5];x-x,1008-1008[BULt];19-21,998-996[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AUCUGAAUCAGUACAAGAACCG&GGGUUUUUG-AUUGAUUCAACU	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN6064_c0_g1_1007_TPlot.pdf
TRINITY_DN6064_c0_g1:1009	si_a765	TRINITY_DN6064_c0_g1	997	1018	1009	-30.50	-20.90	0.685245901639344	9	3-10,1016-1009;11-19,1007-999	1-2,1018-1017[UP5];x-x,1008-1008[BULt];20-21,998-997[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	UCUGAAUCAGUACAAGAACCGG&UGGGUUUUUG-AUUGAUUCAAC	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN6064_c0_g1_1009_TPlot.pdf
TRINITY_DN6064_c0_g1:1010	si_a764	TRINITY_DN6064_c0_g1	998	1019	1010	-28.90	-22.30	0.771626297577855	7.5	1-2,1019-1018;4-11,1016-1009;12-20,1007-999	3-3,1017-1017[SIL];x-x,1008-1008[BULt];21-21,998-998[UP3]	.(((((((((.((((((((.((&)).))))))))-))))))))).	CUGAAUCAGUACAAGAACCGGA&UUGGGUUUUUG-AUUGAUUCAA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6064_c0_g1_1010_TPlot.pdf
TRINITY_DN6064_c0_g1:1011	si_a763	TRINITY_DN6064_c0_g1	999	1020	1011	-28.80	-22.90	0.795138888888889	6.5	1-3,1020-1018;5-12,1016-1009;13-21,1007-999	4-4,1017-1017[SIL];x-x,1008-1008[BULt]	(((((((((.((((((((.(((&))).))))))))-)))))))))	UGAAUCAGUACAAGAACCGGAA&UUUGGGUUUUUG-AUUGAUUCA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN6064_c0_g1_1011_TPlot.pdf
TRINITY_DN6064_c0_g1:1013	si_a761	TRINITY_DN6064_c0_g1	1001	1022	1013	-30.10	-20.90	0.694352159468438	6.5	2-5,1021-1018;7-14,1016-1009;15-21,1007-1001	1-1,1022-1022[UP5];6-6,1017-1017[SIL];x-x,1008-1008[BULt]	(((((((.((((((((.((((.&.)))).))))))))-)))))))	AAUCAGUACAAGAACCGGAAGC&CCUUUGGGUUUUUG-AUUGAUU	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN6064_c0_g1_1013_TPlot.pdf
TRINITY_DN6064_c0_g1:1265	si_s85	TRINITY_DN6064_c0_g1	1254	1283	1265	-33.80	-22.60	0.668639053254438	22.5	1-6,1283-1278;7-20,1268-1255	x-x,1277-1269[BULt];21-21,1254-1254[UP3]	.((((((((((((((.........((((((&))))))---------)))))))))))))).	CCGAAGAGGAGGAAGCGCAAAUCCGGGAAG&CUUUCC---------UUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6064_c0_g1_1265_TPlot.pdf
TRINITY_DN6064_c0_g1:1266	si_s84	TRINITY_DN6064_c0_g1	1255	1284	1266	-32.30	-24.20	0.74922600619195	21.5	1-7,1284-1278;8-21,1268-1255	x-x,1277-1269[BULt]	((((((((((((((.........(((((((&)))))))---------))))))))))))))	CGAAGAGGAGGAAGCGCAAAUCCGGGAAGA&UCUUUCC---------UUUCUUCUUCUUCG	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6064_c0_g1_1266_TPlot.pdf
TRINITY_DN6064_c0_g1:1267	si_s83	TRINITY_DN6064_c0_g1	1256	1285	1267	-30.90	-22.40	0.724919093851133	22	2-8,1284-1278;9-21,1268-1256	1-1,1285-1285[UP5];x-x,1277-1269[BULt]	(((((((((((((.........(((((((.&.)))))))---------)))))))))))))	GAAGAGGAGGAAGCGCAAAUCCGGGAAGAG&UUCUUUCC---------UUUCUUCUUCUUC	3	0.999999999436324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6064_c0_g1_1267_TPlot.pdf
TRINITY_DN6064_c0_g1:1286	si_s73	TRINITY_DN6064_c0_g1	1275	1295	1286	-24.00	-16.00	0.666666666666667	10.5	2-7,1294-1289;9-18,1287-1278	1-1,1295-1295[UP5];8-8,1288-1288[SIL];19-21,1277-1275[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UCCGGGAAGAGAACAGGUGGU&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6064_c0_g1_1286_TPlot.pdf
TRINITY_DN6064_c0_g1:1343	si_a120	TRINITY_DN6064_c0_g1	1332	1350	1343	-30.50	-20.26	0.664262295081967	11	1-8,1350-1343;14-21,1339-1332	9-13,1342-1340[AILq]	((((((((...--((((((((&)))))))).....))))))))	CUAUUGCUCGU--GCAAGUUC&GAGCUUGUUUUAUAGCAAUAG	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN6064_c0_g1_1343_TPlot.pdf
TRINITY_DN6064_c0_g1:812	si_s250	TRINITY_DN6064_c0_g1	800	822	812	-33.30	-22.30	0.66966966966967	7.5	1-9,822-814;10-13,812-809;14-18,807-803	x-x,813-813[BULt];x-x,808-808[BULt];19-21,802-800[UP3]	...(((((.((((.(((((((((&)))))))))-))))-)))))...	UACAAUAUGGUCGUGGAAGUGCC&GGCAUUUCC-CGAU-AUAUUACU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN6064_c0_g1_812_TPlot.pdf
TRINITY_DN6064_c0_g1:814	si_s249	TRINITY_DN6064_c0_g1	801	823	814	-33.30	-22.30	0.66966966966967	7.5	2-10,822-814;11-14,812-809;15-19,807-803	1-1,823-823[UP5];x-x,813-813[BULt];x-x,808-808[BULt];20-21,802-801[UP3]	..(((((.((((.(((((((((.&.)))))))))-))))-)))))..	ACAAUAUGGUCGUGGAAGUGCCG&AGGCAUUUCC-CGAU-AUAUUAC	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s249_TRINITY_DN6064_c0_g1_814_TPlot.pdf
TRINITY_DN6064_c0_g1:815	si_s248	TRINITY_DN6064_c0_g1	802	824	815	-31.90	-22.30	0.699059561128527	8.5	3-11,822-814;12-15,812-809;16-20,807-803	1-2,824-823[UP5];x-x,813-813[BULt];x-x,808-808[BULt];21-21,802-802[UP3]	.(((((.((((.(((((((((..&..)))))))))-))))-))))).	CAAUAUGGUCGUGGAAGUGCCGC&UAGGCAUUUCC-CGAU-AUAUUA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN6064_c0_g1_815_TPlot.pdf
TRINITY_DN6064_c0_g1:816	si_s247	TRINITY_DN6064_c0_g1	803	825	816	-31.70	-22.10	0.697160883280757	9.5	4-12,822-814;13-16,812-809;17-21,807-803	1-3,825-823[UP5];x-x,813-813[BULt];x-x,808-808[BULt]	(((((.((((.(((((((((...&...)))))))))-))))-)))))	AAUAUGGUCGUGGAAGUGCCGCC&AUAGGCAUUUCC-CGAU-AUAUU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN6064_c0_g1_816_TPlot.pdf
TRINITY_DN6064_c0_g1:817	si_s246	TRINITY_DN6064_c0_g1	804	826	817	-31.70	-21.30	0.67192429022082	10.5	5-13,822-814;14-17,812-809;18-21,807-804	1-4,826-823[UP5];x-x,813-813[BULt];x-x,808-808[BULt]	((((.((((.(((((((((....&....)))))))))-))))-))))	AUAUGGUCGUGGAAGUGCCGCCA&AAUAGGCAUUUCC-CGAU-AUAU	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN6064_c0_g1_817_TPlot.pdf
TRINITY_DN6065_c0_g1:487	si_a320	TRINITY_DN6065_c0_g1	477	496	487	-24.40	-16.40	0.672131147540984	4.5	1-14,496-483;18-21,480-477	15-17,482-481[AILq]	((((..-((((((((((((((&))))))))))))))...))))	GAAUUC-GAAAUUAUGGAUAA&UUAUCCAUGAUUUUUUUAUUC	4	0.999999214893531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN6065_c0_g1_487_TPlot.pdf
TRINITY_DN60662_c0_g1:335	si_s94	TRINITY_DN60662_c0_g1	322	344	335	-35.50	-23.40	0.659154929577465	8	1-12,344-333;13-18,330-325	x-x,332-331[BULt];19-21,324-322[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	UCCUUCGGAUCGCGAAGAAGAAG&CUUCUUCUUCGC--UUCGGAUUG	2	0.999985288146911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN60662_c0_g1_335_TPlot.pdf
TRINITY_DN6067_c0_g1:1028	si_a322	TRINITY_DN6067_c0_g1	1017	1037	1028	-27.00	-18.40	0.681481481481481	6.5	2-14,1036-1024;16-17,1022-1021;19-20,1019-1018	1-1,1037-1037[UP5];15-15,1023-1023[SIL];18-18,1020-1020[SIL];21-21,1017-1017[UP3]	.((.((.(((((((((((((.&.))))))))))))).)).)).	UGGUGUUAAAGGAUCAUGGAA&AUCCAUGAUUUUUUUAUUCCU	4	0.999881589511604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN6067_c0_g1_1028_TPlot.pdf
TRINITY_DN60693_c0_g1:423	si_a405	TRINITY_DN60693_c0_g1	412	433	423	-19.80	-13.70	0.691919191919192	6	1-5,433-429;6-16,427-417;18-21,415-412	x-x,428-428[BULt];17-17,416-416[SIL]	((((.(((((((((((.(((((&)))))-))))))))))).))))	UUGAUUGUAGACAAAAUCGAUU&AAUUG-UUUUGUUUAUAUUUAA	2	0.999999998987043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN60693_c0_g1_423_TPlot.pdf
TRINITY_DN606_c13_g1:546	si_a459	TRINITY_DN606_c13_g1	534	556	546	-23.20	-15.30	0.65948275862069	8.5	1-4,556-553;5-14,551-542;16-21,539-534	x-x,552-552[BULt];15-15,541-540[AILt]	((((((..((((((((((.((((&))))-))))))))))-.))))))	UUGCAUUCUUGUGUAUAGUCGAC&GUUG-UUAUAUAUAA-UAUGUAA	3	0.999634903798967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN606_c13_g1_546_TPlot.pdf
TRINITY_DN606_c1_g1:3562	si_s81	TRINITY_DN606_c1_g1	3552	3571	3562	-28.90	-20.70	0.716262975778547	5.5	1-12,3571-3560;15-21,3558-3552	13-14,3559-3559[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	AGAAGGAU-GGGGAAGGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN606_c1_g1_3562_TPlot.pdf
TRINITY_DN606_c1_g1:3563	si_s79	TRINITY_DN606_c1_g1	3551	3572	3563	-26.20	-22.20	0.847328244274809	4.5	1-13,3572-3560;14-21,3558-3551	x-x,3559-3559[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GAGAAGGAUGGGGAAGGAAAAA&UUUUUUCUUUCCU-UUCUUCUU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN606_c1_g1_3563_TPlot.pdf
TRINITY_DN606_c1_g1:3565	si_s78	TRINITY_DN606_c1_g1	3552	3574	3565	-26.20	-22.20	0.847328244274809	5	1-14,3574-3561;15-21,3558-3552	x-x,3560-3559[BULt]	(((((((..((((((((((((((&))))))))))))))--)))))))	AGAAGGAUGGGGAAGGAAAAAGA&UUUUUUUCUUUCCU--UUCUUCU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN606_c1_g1_3565_TPlot.pdf
TRINITY_DN606_c1_g1:3568	si_s74	TRINITY_DN606_c1_g1	3557	3577	3568	-25.00	-17.50	0.7	9	4-18,3574-3560;20-21,3558-3557	1-3,3577-3575[UP5];19-19,3559-3559[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAUGGGGAAGGAAAAAGAAGU&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN606_c1_g1_3568_TPlot.pdf
TRINITY_DN606_c1_g1:3570	si_a327	TRINITY_DN606_c1_g1	3560	3579	3570	-28.40	-18.70	0.658450704225352	6.5	2-10,3578-3570;12-17,3569-3564;19-21,3562-3560	1-1,3579-3579[UP5];11-11,x-x[BULq];18-18,3563-3563[SIL]	(((.((((((-(((((((((.&.))))))))).)))))).)))	GGGGAAGGAA-AAAGAAGUCC&UGAUUUUUUUAUUCCUUGUCC	2	0.999995376455309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN606_c1_g1_3570_TPlot.pdf
TRINITY_DN606_c1_g1:3571	si_s72	TRINITY_DN606_c1_g1	3560	3580	3571	-24.10	-16.90	0.701244813278008	11.5	6-21,3575-3560	1-5,3580-3576[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGGAAGGAAAAAGAAGUCCU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN606_c1_g1_3571_TPlot.pdf
TRINITY_DN606_c1_g1:3699	si_s77	TRINITY_DN606_c1_g1	3688	3708	3699	-25.50	-17.50	0.686274509803922	8	1-10,3708-3699;12-14,3697-3695;16-21,3693-3688	11-11,3698-3698[SIL];15-15,3694-3694[SIL]	((((((.(((.((((((((((&)))))))))).))).))))))	GAGGAGUGGGCAGAAGGAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN606_c1_g1_3699_TPlot.pdf
TRINITY_DN606_c1_g1:3700	si_s76	TRINITY_DN606_c1_g1	3688	3709	3700	-23.60	-15.90	0.673728813559322	8	1-11,3709-3699;13-15,3697-3695;16-21,3693-3688	12-12,3698-3698[SIL];x-x,3694-3694[BULt]	((((((.(((.(((((((((((&))))))))))).)))-))))))	GAGGAGUGGGCAGAAGGAGAAU&AUUUUUUUUCUUUCC-UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN606_c1_g1_3700_TPlot.pdf
TRINITY_DN606_c1_g1:3701	si_s75	TRINITY_DN606_c1_g1	3689	3710	3701	-24.00	-15.90	0.6625	6.5	1-12,3710-3699;14-16,3697-3695;17-21,3693-3689	13-13,3698-3698[SIL];x-x,3694-3694[BULt]	(((((.(((.((((((((((((&)))))))))))).)))-)))))	AGGAGUGGGCAGAAGGAGAAUA&UAUUUUUUUUCUUUCC-UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN606_c1_g1_3701_TPlot.pdf
TRINITY_DN606_c1_g1:5645	si_a698	TRINITY_DN606_c1_g1	5634	5654	5645	-33.60	-22.50	0.669642857142857	14.5	7-19,5648-5636	1-6,5654-5649[UP5];20-21,5635-5634[UP3]	..(((((((((((((......&......)))))))))))))..	UGGGGAUGUGCCAGUAAGAGC&AACACAACUGGUACAUUCCAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a698_TRINITY_DN606_c1_g1_5645_TPlot.pdf
TRINITY_DN606_c1_g2:2375	si_a664	TRINITY_DN606_c1_g2	2365	2383	2375	-29.60	-19.30	0.652027027027027	8.5	2-9,2382-2375;12-21,2374-2365	1-1,2383-2383[UP5];10-11,x-x[BULq]	((((((((((--((((((((.&.))))))))..))))))))))	GUAAGGAAUU--UGGGUAUUA&AAAUGCCUAUUGAUUCCUUAU	4	0.999996869783681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN606_c1_g2_2375_TPlot.pdf
TRINITY_DN606_c1_g2:3385	si_a267	TRINITY_DN606_c1_g2	3374	3398	3385	-37.90	-25.58	0.674934036939314	12.5	2-8,3397-3391;10-21,3385-3374	1-1,3398-3398[UP5];9-9,3390-3386[AILt]	((((((((((((.....(((((((.&.)))))))----.))))))))))))	CUUUUUGUAGGUUACUUUUUGCCCA&AGGGCAAA----CGCCUACGAAAAG	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a267_TRINITY_DN606_c1_g2_3385_TPlot.pdf
TRINITY_DN606_c1_g2:3819	si_a687	TRINITY_DN606_c1_g2	3807	3828	3819	-37.10	-25.10	0.676549865229111	6	2-13,3827-3816;14-20,3814-3808	1-1,3828-3828[UP5];x-x,3815-3815[BULt];21-21,3807-3807[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	GAGUUGUGAUUUGAAACUGUGC&ACGCGGUUUCGAA-CACAACUG	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a687_TRINITY_DN606_c1_g2_3819_TPlot.pdf
TRINITY_DN606_c1_g2:3900	si_a785	TRINITY_DN606_c1_g2	3888	3909	3900	-25.90	-19.12	0.738223938223938	8.5	1-15,3909-3895;19-21,3890-3888	16-18,3894-3891[AILt]	(((....(((((((((((((((&)))))))))))))))-...)))	GAGUGUGAGAAGGAUGGGAGAG&CUCUUCUAUUUUUCU-AUUUUC	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN606_c1_g2_3900_TPlot.pdf
TRINITY_DN606_c1_g2:3906	si_a779	TRINITY_DN606_c1_g2	3895	3915	3906	-27.00	-20.30	0.751851851851852	11.5	6-21,3910-3895	1-5,3915-3911[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAGGAUGGGAGAGUGGUCA&AUUCAACUCUUCUAUUUUUCU	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN606_c1_g2_3906_TPlot.pdf
TRINITY_DN606_c1_g2:3907	si_a778	TRINITY_DN606_c1_g2	3896	3914	3907	-28.30	-20.30	0.717314487632509	8.5	1-4,3914-3911;7-21,3910-3896	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GAAGGAUGGGAGAGU--GGUC&GAUUCAACUCUUCUAUUUUUC	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN606_c1_g2_3907_TPlot.pdf
TRINITY_DN606_c1_g2:3908	si_a777	TRINITY_DN606_c1_g2	3897	3915	3908	-27.00	-18.10	0.67037037037037	8	1-5,3915-3911;8-21,3910-3897	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	AAGGAUGGGAGAGU--GGUCA&UGAUUCAACUCUUCUAUUUUU	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN606_c1_g2_3908_TPlot.pdf
TRINITY_DN606_c1_g2:4048	si_s693	TRINITY_DN606_c1_g2	4037	4057	4048	-23.90	-15.90	0.665271966527197	8	1-16,4057-4042;19-21,4039-4037	17-18,4041-4040[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	UGAGUGGUUGAUUGGUUGAAC&GUUUAAUUAGUCGAUUUAUUA	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN606_c1_g2_4048_TPlot.pdf
TRINITY_DN606_c1_g2:4053	si_s688	TRINITY_DN606_c1_g2	4042	4061	4053	-28.20	-19.60	0.695035460992908	6.5	1-4,4061-4058;6-21,4057-4042	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	GGUUGAUUGGUUGAAC-CAUG&CAUGAGUUUAAUUAGUCGAUU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN606_c1_g2_4053_TPlot.pdf
TRINITY_DN606_c1_g2:5469	si_s717	TRINITY_DN606_c1_g2	5458	5478	5469	-30.10	-20.68	0.687043189368771	8.5	2-8,5477-5471;12-20,5467-5459	1-1,5478-5478[UP5];9-11,5470-5468[SIL];21-21,5458-5458[UP3]	.(((((((((...(((((((.&.)))))))...))))))))).	GAGAUAGUAUGCAUCCCUGUC&AACAGGGAAAGAUAUUAUCUA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN606_c1_g2_5469_TPlot.pdf
TRINITY_DN606_c1_g2:646	si_s309	TRINITY_DN606_c1_g2	635	654	646	-33.80	-23.20	0.686390532544379	8.5	1-6,654-649;10-20,646-636	7-9,648-647[AILq];21-21,635-635[UP3]	.(((((((((((..-((((((&))))))...))))))))))).	GAGGGAGGGCAGCA-UUUCGC&GCGAAAAUUCUGUCCUUCUUG	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN606_c1_g2_646_TPlot.pdf
TRINITY_DN606_c1_g2:7853	si_a867	TRINITY_DN606_c1_g2	7842	7862	7853	-24.10	-15.80	0.655601659751037	4	1-16,7862-7847;18-20,7845-7843	17-17,7846-7846[SIL];21-21,7842-7842[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	ACAGAUAAGUCUUUAGUAAUU&AAUUAUUAAAGAUUUAGUUGC	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN606_c1_g2_7853_TPlot.pdf
TRINITY_DN606_c1_g2:7854	si_a866	TRINITY_DN606_c1_g2	7843	7863	7854	-23.30	-15.90	0.682403433476395	4	2-17,7862-7847;19-21,7845-7843	1-1,7863-7863[UP5];18-18,7846-7846[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	CAGAUAAGUCUUUAGUAAUUU&CAAUUAUUAAAGAUUUAGUUG	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN606_c1_g2_7854_TPlot.pdf
TRINITY_DN606_c1_g2:8290	si_a641	TRINITY_DN606_c1_g2	8274	8299	8290	-23.60	-16.20	0.686440677966102	10	3-15,8297-8285;16-21,8279-8274	1-2,8299-8298[UP5];x-x,8284-8280[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	CGAUAUCCCAAAUUACUCAGAAAGUC&AUUUUUUUGAGUAAU-----AUAUCG	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN606_c1_g2_8290_TPlot.pdf
TRINITY_DN606_c1_g2:8753	si_a460	TRINITY_DN606_c1_g2	8742	8763	8753	-21.60	-15.20	0.703703703703704	9.5	3-9,8761-8755;10-19,8753-8744	1-2,8763-8762[UP5];x-x,8754-8754[BULt];20-21,8743-8742[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	AAUGCAUAUUGUGAUAUAGCUU&UUGUUAUAU-AUAAUAUGUAAU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN606_c1_g2_8753_TPlot.pdf
TRINITY_DN606_c1_g2:8807	si_a345	TRINITY_DN606_c1_g2	8796	8821	8807	-26.90	-18.50	0.687732342007435	13	1-4,8821-8818;5-18,8812-8799	x-x,8817-8813[BULt];19-21,8798-8796[UP3]	...((((((((((((((.....((((&))))-----))))))))))))))...	AUCGAAUUAAUAUUUUCCACUUGGGA&UCCC-----GAAAAUAUUAAUUCUAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN606_c1_g2_8807_TPlot.pdf
TRINITY_DN606_c1_g2:990	si_s1	TRINITY_DN606_c1_g2	977	999	990	-18.70	-13.20	0.705882352941176	7	2-15,998-985;16-20,982-978	1-1,999-999[UP5];x-x,984-983[BULt];21-21,977-977[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	CGAUGAUUUAAGUAAUAUGGAAC&UUUUUAUAUUACUUA--UUAUUA	2	0.998313119563257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN606_c1_g2_990_TPlot.pdf
TRINITY_DN60702_c0_g1:150	si_a393	TRINITY_DN60702_c0_g1	139	159	150	-22.70	-19.20	0.845814977973568	4.5	1-18,159-142	19-21,141-139[UP3]	...((((((((((((((((((&))))))))))))))))))...	CCCAUAAUUCUAUGUUCUUAA&UUAAGAAUAUAGAAUUGUUUU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN60702_c0_g1_150_TPlot.pdf
TRINITY_DN60702_c0_g1:155	si_a388	TRINITY_DN60702_c0_g1	144	164	155	-24.80	-16.70	0.673387096774194	9.5	6-21,159-144	1-5,164-160[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUUCUAUGUUCUUAACACCU&UCGAAUUAAGAAUAUAGAAUU	1	0.0154030798505176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a388_TRINITY_DN60702_c0_g1_155_TPlot.pdf
TRINITY_DN6070_c0_g1:51	si_a374	TRINITY_DN6070_c0_g1	40	61	51	-25.60	-16.92	0.6609375	10.5	1-5,61-57;9-20,52-41	6-8,56-53[AILt];21-21,40-40[UP3]	.((((((((((((....(((((&)))))-...)))))))))))).	CAUUUGAAAUCGUCCAGUGAUC&GAUCA-AAAAUGAUUUCGAAUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN6070_c0_g1_51_TPlot.pdf
TRINITY_DN6072_c0_g1:1312	si_s312	TRINITY_DN6072_c0_g1	1301	1321	1312	-29.00	-20.80	0.717241379310345	14	7-20,1315-1302	1-6,1321-1316[UP5];21-21,1301-1301[UP3]	.((((((((((((((......&......)))))))))))))).	AGACAAGGAGGAUAGUGGAAA&AAAAUUCUGUCCUUCUUGUUA	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN6072_c0_g1_1312_TPlot.pdf
TRINITY_DN6072_c0_g1:2187	si_a65	TRINITY_DN6072_c0_g1	2173	2196	2187	-27.70	-18.72	0.675812274368231	14	3-12,2194-2185;15-21,2179-2173	1-2,2196-2195[UP5];13-14,2184-2180[AILt]	(((((((.....((((((((((..&..))))))))))---..)))))))	AGAGCAAGUCAGUGAAGGAGGCAG&UCGCUUCUUUCA---AAUUGUUUU	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN6072_c0_g1_2187_TPlot.pdf
TRINITY_DN6072_c0_g1:2327	si_s162	TRINITY_DN6072_c0_g1	2315	2336	2327	-40.10	-28.40	0.708229426433915	9.5	1-12,2336-2325;13-16,2323-2320	x-x,2324-2324[BULt];17-21,2319-2315[UP3]	.....((((.((((((((((((&))))))))))))-)))).....	CGUGGGCCCGUUGGCCGUGAAC&GUUCAUGGCCAG-GGGUAAAGA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN6072_c0_g1_2327_TPlot.pdf
TRINITY_DN6072_c0_g1:4269	si_s894	TRINITY_DN6072_c0_g1	4258	4278	4269	-29.10	-19.10	0.656357388316151	14.5	5-16,4274-4263	1-4,4278-4275[UP5];17-21,4262-4258[UP3]	.....((((((((((((....&....)))))))))))).....	GAUGAGAGGAGAGAGCUCGCC&AAUAGGCUUUCUCUUCAAUUU	2	0.999997118796743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6072_c0_g1_4269_TPlot.pdf
TRINITY_DN6072_c0_g1:6158	si_s5	TRINITY_DN6072_c0_g1	6147	6172	6158	-21.70	-14.60	0.672811059907834	16.5	1-7,6172-6166;8-20,6160-6148	x-x,6165-6161[BULt];21-21,6147-6147[UP3]	.(((((((((((((.....(((((((&)))))))-----))))))))))))).	CUGGUGGUGAUGAGACUCUUGAUGUG&UAUAUUA-----CUUAUUAUUACUAU	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN6072_c0_g1_6158_TPlot.pdf
TRINITY_DN6072_c0_g1:6654	si_s89	TRINITY_DN6072_c0_g1	6642	6664	6654	-35.30	-23.00	0.651558073654391	9	1-4,6664-6661;5-9,6659-6655;11-17,6653-6647;18-20,6645-6643	x-x,6660-6660[BULt];10-10,6654-6654[SIL];x-x,6646-6646[BULt];21-21,6642-6642[UP3]	.(((.(((((((.(((((.((((&))))-))))).)))))))-))).	UGAGCGCGAGGACGGAGAUGAGG&CCUU-UCUUCUUCUUCGC-UUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6072_c0_g1_6654_TPlot.pdf
TRINITY_DN6072_c0_g1:6656	si_s87	TRINITY_DN6072_c0_g1	6645	6666	6656	-32.90	-21.90	0.665653495440729	10.5	2-6,6665-6661;7-11,6659-6655;13-19,6653-6647	1-1,6666-6666[UP5];x-x,6660-6660[BULt];12-12,6654-6654[SIL];20-21,6646-6645[UP3]	..(((((((.(((((.(((((.&.)))))-))))).)))))))..	GCGCGAGGACGGAGAUGAGGGC&UUCCUU-UCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6072_c0_g1_6656_TPlot.pdf
TRINITY_DN6072_c0_g1:6658	si_s85	TRINITY_DN6072_c0_g1	6647	6668	6658	-33.80	-22.10	0.653846153846154	9.5	1-2,6668-6667;4-8,6665-6661;9-13,6659-6655;15-21,6653-6647	3-3,6666-6666[SIL];x-x,6660-6660[BULt];14-14,6654-6654[SIL]	(((((((.(((((.(((((.((&)).)))))-))))).)))))))	GCGAGGACGGAGAUGAGGGCGG&CUUUCCUU-UCUUCUUCUUCGC	2	0.999999999999285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6072_c0_g1_6658_TPlot.pdf
TRINITY_DN6072_c0_g1:6683	si_s806	TRINITY_DN6072_c0_g1	6671	6692	6683	-28.60	-20.80	0.727272727272727	10.5	4-14,6689-6679;15-19,6677-6673	1-3,6692-6690[UP5];x-x,6678-6678[BULt];20-21,6672-6671[UP3]	..(((((.(((((((((((...&...)))))))))))-)))))..	GCGAAGAGGGUGGCGAAGAGGG&UUAUCUUCGUUACC-UUUUCUU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6072_c0_g1_6683_TPlot.pdf
TRINITY_DN6072_c0_g1:6685	si_s804	TRINITY_DN6072_c0_g1	6674	6694	6685	-27.90	-20.70	0.741935483870968	12.5	6-20,6689-6675	1-5,6694-6690[UP5];21-21,6674-6674[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGAGGGUGGCGAAGAGGGCG&UUUUAUCUUCGUUACCUUUUC	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6072_c0_g1_6685_TPlot.pdf
TRINITY_DN6072_c0_g1:6689	si_s800	TRINITY_DN6072_c0_g1	6678	6694	6689	-29.70	-19.96	0.672053872053872	14.5	1-3,6694-6692;10-21,6689-6678	4-9,6691-6690[AILq]	((((((((((((..----(((&)))......))))))))))))	GGGUGGCGAAGAGG----GCG&CGUAUUUUAUCUUCGUUACCU	2	0.985651885684366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6072_c0_g1_6689_TPlot.pdf
TRINITY_DN60733_c0_g1:827	si_a80	TRINITY_DN60733_c0_g1	816	836	827	-22.10	-15.10	0.683257918552036	9.5	2-15,835-822	1-1,836-836[UP5];16-21,821-816[UP3]	......((((((((((((((.&.))))))))))))))......	UAAAACUGAUGAUGAGAAACG&UGUUUUUCAUUAUUAAGAAAA	4	0.999953229570889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN60733_c0_g1_827_TPlot.pdf
TRINITY_DN60733_c0_g1:834	si_a73	TRINITY_DN60733_c0_g1	823	848	834	-21.90	-16.30	0.744292237442922	13.5	1-6,848-843;7-21,837-823	x-x,842-838[BULt]	(((((((((((((((.....((((((&))))))-----)))))))))))))))	GAUGAUGAGAAACGGGAAACUUUGAA&UUCAAA-----UUGUUUUUCAUUAUU	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN60733_c0_g1_834_TPlot.pdf
TRINITY_DN6073_c0_g1:1446	si_a351	TRINITY_DN6073_c0_g1	1435	1455	1446	-20.50	-14.28	0.696585365853658	5	1-14,1455-1442;18-21,1438-1435	15-17,1441-1439[SIL]	((((...((((((((((((((&))))))))))))))...))))	AUCGUUUUGGAAUUGAUAUUU&AAAUAUUAAUUCUAUUUUGAU	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN6073_c0_g1_1446_TPlot.pdf
TRINITY_DN60740_c0_g1:1256	si_a24	TRINITY_DN60740_c0_g1	1245	1265	1256	-24.20	-16.70	0.690082644628099	11	6-20,1260-1246	1-5,1265-1261[UP5];21-21,1245-1245[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUCUUAGGGCUAAAAAAGUAG&AUUUAUUUUUAGUUCUAAGAC	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN60740_c0_g1_1256_TPlot.pdf
TRINITY_DN60740_c0_g1:286	si_s50	TRINITY_DN60740_c0_g1	276	295	286	-29.00	-19.20	0.662068965517241	7	1-11,295-285;14-20,283-277	12-13,284-284[AILq];21-21,276-276[UP3]	.(((((((.-(((((((((((&)))))))))))..))))))).	CUGCUGGCA-GAGAUUCAAUU&AAUUGGAUUUCAAGUUAGCAA	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN60740_c0_g1_286_TPlot.pdf
TRINITY_DN60740_c0_g1:288	si_s48	TRINITY_DN60740_c0_g1	278	297	288	-28.80	-19.80	0.6875	5	1-13,297-285;16-21,283-278	14-15,284-284[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	GCUGGCA-GAGAUUCAAUUAU&AUAAUUGGAUUUCAAGUUAGC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN60740_c0_g1_288_TPlot.pdf
TRINITY_DN60740_c0_g1:296	si_s40	TRINITY_DN60740_c0_g1	285	304	296	-24.30	-16.70	0.687242798353909	6	2-8,303-297;10-21,296-285	1-1,304-304[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	GAGAUUCAAUUA-UAAGGGUC&AAUCUUUAAUAAUUGGAUUUC	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN60740_c0_g1_296_TPlot.pdf
TRINITY_DN60740_c0_g1:810	si_s10	TRINITY_DN60740_c0_g1	800	819	810	-23.80	-17.40	0.73109243697479	7.5	2-16,818-804;19-21,802-800	1-1,819-819[UP5];17-18,803-803[AILq]	(((.-(((((((((((((((.&.)))))))))))))))..)))	UCAG-GUAGUAGUGAUGGGUC&UACUUAUUAUUACUAUAUUGA	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN60740_c0_g1_810_TPlot.pdf
TRINITY_DN60740_c0_g1:811	si_s9	TRINITY_DN60740_c0_g1	800	820	811	-22.90	-16.00	0.698689956331878	11.5	3-17,818-804	1-2,820-819[UP5];18-21,803-800[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCAGGUAGUAGUGAUGGGUCA&UUACUUAUUAUUACUAUAUUG	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN60740_c0_g1_811_TPlot.pdf
TRINITY_DN60740_c0_g1:812	si_s8	TRINITY_DN60740_c0_g1	801	821	812	-21.30	-16.00	0.751173708920188	12.5	4-18,818-804	1-3,821-819[UP5];19-21,803-801[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAGGUAGUAGUGAUGGGUCAA&AUUACUUAUUAUUACUAUAUU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN60740_c0_g1_812_TPlot.pdf
TRINITY_DN60740_c0_g1:814	si_s6	TRINITY_DN60740_c0_g1	803	823	814	-21.70	-16.00	0.737327188940092	14	6-20,818-804	1-5,823-819[UP5];21-21,803-803[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUAGUAGUGAUGGGUCAAUU&AUAUUACUUAUUAUUACUAUA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN60740_c0_g1_814_TPlot.pdf
TRINITY_DN60740_c0_g1:816	si_s4	TRINITY_DN60740_c0_g1	805	825	816	-21.60	-14.10	0.652777777777778	16	8-21,818-805	1-7,825-819[UP5]	((((((((((((((.......&.......))))))))))))))	UAGUAGUGAUGGGUCAAUUAG&UUAUAUUACUUAUUAUUACUA	2	0.999220248733987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN60740_c0_g1_816_TPlot.pdf
TRINITY_DN6074_c1_g1:2735	si_a181	TRINITY_DN6074_c1_g1	2724	2744	2735	-32.00	-22.10	0.690625	5	2-6,2743-2739;8-14,2737-2731;16-21,2729-2724	1-1,2744-2744[UP5];7-7,2738-2738[SIL];15-15,2730-2730[SIL]	((((((.(((((((.(((((.&.))))).))))))).))))))	UAGGGACGGAUAUUUUCUAGC&UCUAGAUAAUAUCUUUCCCUG	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN6074_c1_g1_2735_TPlot.pdf
TRINITY_DN6074_c1_g1:2736	si_a180	TRINITY_DN6074_c1_g1	2725	2746	2736	-32.10	-22.00	0.685358255451713	6.5	1-2,2746-2745;3-7,2743-2739;9-15,2737-2731;17-21,2729-2725	x-x,2744-2744[BULt];8-8,2738-2738[SIL];16-16,2730-2730[SIL]	(((((.(((((((.(((((.((&))-))))).))))))).)))))	AGGGACGGAUAUUUUCUAGCGC&GU-CUAGAUAAUAUCUUUCCCU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN6074_c1_g1_2736_TPlot.pdf
TRINITY_DN6074_c1_g1:2737	si_a179	TRINITY_DN6074_c1_g1	2726	2745	2737	-32.90	-21.80	0.662613981762918	5.5	1-2,2745-2744;4-8,2743-2739;10-16,2737-2731;18-21,2729-2726	3-3,x-x[BULq];9-9,2738-2738[SIL];17-17,2730-2730[SIL]	((((.(((((((.(((((-((&)).))))).))))))).))))	GGGACGGAUAUUUUCUAG-CG&CGUCUAGAUAAUAUCUUUCCC	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN6074_c1_g1_2737_TPlot.pdf
TRINITY_DN60750_c0_g1:134	si_s82	TRINITY_DN60750_c0_g1	123	143	134	-28.90	-21.80	0.754325259515571	6	1-6,143-138;8-10,136-134;12-20,132-124	7-7,137-137[SIL];11-11,133-133[SIL];21-21,123-123[UP3]	.(((((((((.(((.((((((&)))))).))).))))))))).	UAGAAGAAGAUAGGCGAGAAA&UUUCUUUCCUUUCUUCUUCUU	4	0.999999987353917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN60750_c0_g1_134_TPlot.pdf
TRINITY_DN60750_c0_g1:138	si_s78	TRINITY_DN60750_c0_g1	127	147	138	-26.20	-17.50	0.66793893129771	9	4-10,144-138;12-14,136-134;16-21,132-127	1-3,147-145[UP5];11-11,137-137[SIL];15-15,133-133[SIL]	((((((.(((.(((((((...&...))))))).))).))))))	AGAAGAUAGGCGAGAAAAUAU&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN60750_c0_g1_138_TPlot.pdf
TRINITY_DN6075_c0_g1:6697	si_a266	TRINITY_DN6075_c0_g1	6686	6707	6697	-38.30	-26.50	0.691906005221932	9	1-5,6707-6703;6-6,6701-6701;9-13,6698-6694;15-19,6692-6688	x-x,6702-6702[BULt];7-8,6700-6699[SIL];14-14,6693-6693[SIL];20-21,6687-6686[UP3]	..(((((.(((((..(.(((((&)))))-)..))))).)))))..	UCUUCGUUGGCGUGGGACCCUC&GAGGG-CAAACGCCUACGAAAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN6075_c0_g1_6697_TPlot.pdf
TRINITY_DN6075_c0_g1:6780	si_a536	TRINITY_DN6075_c0_g1	6769	6789	6780	-38.50	-26.20	0.680519480519481	8	1-3,6789-6787;6-11,6784-6779;14-20,6776-6770	4-5,6786-6785[SIL];12-13,6778-6777[SIL];21-21,6769-6769[UP3]	.(((((((..((((((..(((&)))..))))))..))))))).	GAGAUUGAUACGAUCGGGCGC&GCGAGCGAUCGGUUCAAUCUA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a536_TRINITY_DN6075_c0_g1_6780_TPlot.pdf
TRINITY_DN6075_c0_g1:6794	si_s178	TRINITY_DN6075_c0_g1	6780	6803	6794	-34.70	-23.20	0.668587896253602	12	3-10,6801-6794;11-14,6791-6788;17-21,6784-6780	1-2,6803-6802[UP5];x-x,6793-6792[BULt];15-16,6787-6785[AILt]	(((((...((((..((((((((..&..))))))))--))))-..)))))	GAUCGGGCGCUCACGGGCGUCUGC&AAAGAUGCCC--GAGU-AACGAUU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s178_TRINITY_DN6075_c0_g1_6794_TPlot.pdf
TRINITY_DN6075_c0_g1:7294	si_s219	TRINITY_DN6075_c0_g1	7283	7303	7294	-33.80	-23.40	0.692307692307692	10	3-17,7301-7287	1-2,7303-7302[UP5];18-21,7286-7283[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCGGUCACGCGGUUUUGGGAU&UGUUCGAAACCGCGUGAAUAA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN6075_c0_g1_7294_TPlot.pdf
TRINITY_DN6075_c0_g1:7716	si_a757	TRINITY_DN6075_c0_g1	7705	7724	7716	-33.10	-23.50	0.709969788519637	7	1-8,7724-7717;10-18,7716-7708	9-9,x-x[BULq];19-21,7707-7705[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	CAACAAAAAUCC-GAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6075_c0_g1_7716_TPlot.pdf
TRINITY_DN6075_c0_g1:7717	si_a756	TRINITY_DN6075_c0_g1	7706	7725	7717	-33.10	-23.80	0.719033232628399	6.5	2-9,7724-7717;11-19,7716-7708	1-1,7725-7725[UP5];10-10,x-x[BULq];20-21,7707-7706[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	AACAAAAAUCC-GAGGAGGUG&AACCUCCUUUGGGUUUUUGAU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN6075_c0_g1_7717_TPlot.pdf
TRINITY_DN6075_c0_g1:7723	si_a502	TRINITY_DN6075_c0_g1	7712	7736	7723	-32.10	-21.40	0.666666666666667	16.5	1-3,7736-7734;5-9,7732-7728;10-19,7723-7714	4-4,7733-7733[SIL];x-x,7727-7724[BULt];20-21,7713-7712[UP3]	..((((((((((....(((((.(((&))).)))))----))))))))))..	AAUCCGAGGAGGUGCAACGAGUGGC&GUUUUUCGU----CUUCCUUGGAAU	2	0.999999868459029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN6075_c0_g1_7723_TPlot.pdf
TRINITY_DN6075_c0_g1:7917	si_a501	TRINITY_DN6075_c0_g1	7905	7926	7917	-33.50	-22.50	0.671641791044776	8.5	1-1,7926-7926;3-14,7924-7913;15-18,7911-7908	2-2,7925-7925[SIL];x-x,7912-7912[BULt];19-21,7907-7905[UP3]	...((((.((((((((((((.(&).))))))))))))-))))...	CAACAGGCGAAGACGAGAAGGG&CGUUUUUCGUCUUC-CUUGGAA	3	0.999999995277542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN6075_c0_g1_7917_TPlot.pdf
TRINITY_DN6075_c0_g1:8015	si_s650	TRINITY_DN6075_c0_g1	8004	8024	8015	-41.50	-28.20	0.679518072289157	5.5	2-16,8023-8009;18-18,8007-8007	1-1,8024-8024[UP5];17-17,8008-8008[SIL];19-21,8006-8004[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	AGGCGCUGAUUGUAUCGAGGA&CCCUCGAUACAAUCGGGGGAU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s650_TRINITY_DN6075_c0_g1_8015_TPlot.pdf
TRINITY_DN6075_c0_g1:8155	si_s58	TRINITY_DN6075_c0_g1	8144	8164	8155	-29.30	-19.50	0.665529010238908	8	1-10,8164-8155;13-18,8152-8147	11-12,8154-8153[SIL];19-21,8146-8144[UP3]	...((((((..((((((((((&))))))))))..))))))...	GUGGGAAGUCACUAACUUGAG&UUCAAGUUAGCAACUUCUAUU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN6075_c0_g1_8155_TPlot.pdf
TRINITY_DN6075_c0_g1:8156	si_s57	TRINITY_DN6075_c0_g1	8145	8165	8156	-29.30	-19.60	0.668941979522184	7.5	2-11,8164-8155;14-19,8152-8147	1-1,8165-8165[UP5];12-13,8154-8153[SIL];20-21,8146-8145[UP3]	..((((((..((((((((((.&.))))))))))..))))))..	UGGGAAGUCACUAACUUGAGC&UUUCAAGUUAGCAACUUCUAU	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN6075_c0_g1_8156_TPlot.pdf
TRINITY_DN60767_c0_g1:97	si_a108	TRINITY_DN60767_c0_g1	85	106	97	-28.50	-19.00	0.666666666666667	4	2-15,105-92;16-21,90-85	1-1,106-106[UP5];x-x,91-91[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	AAUAAGCCUUGUAUUUUAUUUG&AAGAUAAAAUACGAG-CUUGUU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN60767_c0_g1_97_TPlot.pdf
TRINITY_DN6076_c0_g1:2365	si_a140	TRINITY_DN6076_c0_g1	2354	2374	2365	-25.20	-16.60	0.658730158730159	16.5	9-21,2366-2354	1-8,2374-2367[UP5]	(((((((((((((........&........)))))))))))))	GAGACGACAACGAAGAGCCGC&GUAAUUAAUCGUUGUUGUUUU	4	0.999999971123102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN6076_c0_g1_2365_TPlot.pdf
TRINITY_DN60771_c0_g1:39	si_a319	TRINITY_DN60771_c0_g1	30	48	39	-22.40	-14.70	0.65625	6	1-10,48-39;14-21,37-30	11-13,38-38[AILq]	((((((((.--((((((((((&))))))))))...))))))))	AAUAAAAAC--CAUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN60771_c0_g1_39_TPlot.pdf
TRINITY_DN60777_c0_g1:121	si_s295	TRINITY_DN60777_c0_g1	109	131	121	-32.20	-21.10	0.65527950310559	10	1-4,131-128;7-11,124-120;12-19,118-111	5-6,127-125[AILt];x-x,119-119[BULt];20-21,110-109[UP3]	..((((((((.(((((...((((&))))-..)))))-))))))))..	UGUUCGCAAUAUCCAAGGAGACU&AGUC-GAUUGGA-AUUGCGAAAA	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN60777_c0_g1_121_TPlot.pdf
TRINITY_DN60777_c0_g1:122	si_s294	TRINITY_DN60777_c0_g1	110	132	122	-32.60	-22.20	0.680981595092024	9	1-5,132-128;8-12,124-120;13-20,118-111	6-7,127-125[AILt];x-x,119-119[BULt];21-21,110-110[UP3]	.((((((((.(((((...(((((&)))))-..)))))-)))))))).	GUUCGCAAUAUCCAAGGAGACUA&UAGUC-GAUUGGA-AUUGCGAAA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN60777_c0_g1_122_TPlot.pdf
TRINITY_DN60781_c0_g1:725	si_a407	TRINITY_DN60781_c0_g1	714	734	725	-19.80	-13.30	0.671717171717172	10	2-4,733-731;6-17,729-718	1-1,734-734[UP5];5-5,730-730[SIL];18-21,717-714[UP3]	....((((((((((((.(((.&.))).))))))))))))....	GUUGAAAUAUAAGCAGUGCAG&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN60781_c0_g1_725_TPlot.pdf
TRINITY_DN6080_c0_g1:300	si_a72	TRINITY_DN6080_c0_g1	289	311	300	-21.90	-14.98	0.684018264840183	10.5	1-7,311-305;10-20,300-290	8-9,304-301[AILt];21-21,289-289[UP3]	.(((((((((((....(((((((&)))))))--..))))))))))).	CUGAUGAAAAACUAGUUUUGGAA&UUUCAAA--UUGUUUUUCAUUAU	3	0.999999996785422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN6080_c0_g1_300_TPlot.pdf
TRINITY_DN6080_c0_g1:302	si_a71	TRINITY_DN6080_c0_g1	290	313	302	-23.30	-15.60	0.669527896995708	7.5	1-5,313-309;6-10,306-302;11-21,300-290	x-x,308-307[BULt];x-x,301-301[BULt]	(((((((((((.(((((..(((((&)))))--)))))-)))))))))))	UGAUGAAAAACUAGUUUUGGAAAG&CUUUC--AAAUU-GUUUUUCAUUA	4	0.999999999856589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN6080_c0_g1_302_TPlot.pdf
TRINITY_DN60818_c0_g1:338	si_s806	TRINITY_DN60818_c0_g1	327	347	338	-28.60	-19.20	0.671328671328671	8	1-15,347-333	16-21,332-327[UP3]	......(((((((((((((((&)))))))))))))))......	UAUUUUAGGUAAUGGAGAUAA&UUAUCUUCGUUACCUUUUCUU	2	0.999998582666172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN60818_c0_g1_338_TPlot.pdf
TRINITY_DN60818_c0_g1:344	si_s800	TRINITY_DN60818_c0_g1	333	353	344	-29.70	-19.40	0.653198653198653	12	7-21,347-333	1-6,353-348[UP5]	(((((((((((((((......&......)))))))))))))))	AGGUAAUGGAGAUAAUGUUAG&CGUAUUUUAUCUUCGUUACCU	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN60818_c0_g1_344_TPlot.pdf
TRINITY_DN6082_c0_g1:1451	si_a545	TRINITY_DN6082_c0_g1	1440	1459	1451	-28.10	-19.00	0.676156583629893	7.5	2-6,1458-1454;9-19,1452-1442	1-1,1459-1459[UP5];7-8,1453-1453[AILq];20-21,1441-1440[UP3]	..(((((((((((.-(((((.&.)))))..)))))))))))..	UAGAAGAAAUAGAA-GAACCU&CGGUUCAAUCUAUUUCUUUAU	2	0.980896339800985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN6082_c0_g1_1451_TPlot.pdf
TRINITY_DN6082_c0_g1:1501	si_s134	TRINITY_DN6082_c0_g1	1488	1510	1501	-30.50	-21.90	0.718032786885246	8	1-10,1510-1501;12-20,1497-1489	11-11,1500-1498[AILt];21-21,1488-1488[UP3]	.(((((((((...((((((((((&))))))))))--.))))))))).	UGGUUUUUGAAAGUGAUUCAGCU&AGUUGAAUCA--AUCAAAAACCC	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s134_TRINITY_DN6082_c0_g1_1501_TPlot.pdf
TRINITY_DN6082_c0_g1:1502	si_s133	TRINITY_DN6082_c0_g1	1489	1511	1502	-30.10	-25.30	0.840531561461794	7	1-11,1511-1501;13-21,1497-1489	12-12,1500-1498[AILt]	(((((((((...(((((((((((&)))))))))))--.)))))))))	GGUUUUUGAAAGUGAUUCAGCUC&GAGUUGAAUCA--AUCAAAAACC	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s133_TRINITY_DN6082_c0_g1_1502_TPlot.pdf
TRINITY_DN6082_c0_g1:1503	si_s132	TRINITY_DN6082_c0_g1	1490	1512	1503	-28.40	-23.60	0.830985915492958	6	1-12,1512-1501;14-21,1497-1490	13-13,1500-1498[AILt]	((((((((...((((((((((((&))))))))))))--.))))))))	GUUUUUGAAAGUGAUUCAGCUCU&AGAGUUGAAUCA--AUCAAAAAC	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s132_TRINITY_DN6082_c0_g1_1503_TPlot.pdf
TRINITY_DN6082_c0_g1:1516	si_s122	TRINITY_DN6082_c0_g1	1502	1525	1516	-28.30	-19.70	0.696113074204947	9.5	2-10,1524-1516;11-21,1512-1502	1-1,1525-1525[UP5];x-x,1515-1513[BULt]	(((((((((((...(((((((((.&.)))))))))---)))))))))))	GAUUCAGCUCUACAUUUGUUUUUG&GAAAAAUAGA---AGAGUUGAAUC	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s122_TRINITY_DN6082_c0_g1_1516_TPlot.pdf
TRINITY_DN60837_c0_g1:2199	si_a497	TRINITY_DN60837_c0_g1	2189	2208	2199	-32.00	-25.30	0.790625	4.5	2-11,2207-2198;13-21,2197-2189	1-1,2208-2208[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AAGGGAGAC-AAAGACGACAC&AUGUCGUUUUUCGUCUUCCUU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN60837_c0_g1_2199_TPlot.pdf
TRINITY_DN60837_c0_g1:2202	si_a494	TRINITY_DN60837_c0_g1	2192	2211	2202	-29.50	-19.80	0.671186440677966	9.5	5-14,2207-2198;16-21,2197-2192	1-4,2211-2208[UP5];15-15,x-x[BULq]	((((((-((((((((((....&....)))))))))).))))))	GGAGAC-AAAGACGACACGUA&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999769446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN60837_c0_g1_2202_TPlot.pdf
TRINITY_DN60837_c0_g1:2565	si_a664	TRINITY_DN60837_c0_g1	2554	2575	2565	-29.60	-20.00	0.675675675675676	12	4-8,2572-2568;9-19,2566-2556	1-3,2575-2573[UP5];x-x,2567-2567[BULt];20-21,2555-2554[UP3]	..(((((((((((.(((((...&...)))))-)))))))))))..	UCGAGGAGUCGAUCAGGUACGG&AAAUGCCU-AUUGAUUCCUUAU	4	0.998728403354056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN60837_c0_g1_2565_TPlot.pdf
TRINITY_DN60837_c0_g1:2580	si_s194	TRINITY_DN60837_c0_g1	2568	2587	2580	-30.30	-19.70	0.65016501650165	7.5	1-4,2587-2584;7-15,2583-2575;16-20,2573-2569	5-6,x-x[BULq];x-x,2574-2574[BULt];21-21,2568-2568[UP3]	.(((((.(((((((((--((((&))))..)))))))))-))))).	AGGUACGGUUCCAAGA--AUCG&CGAUUAUUUUGGAAU-GUACCA	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN60837_c0_g1_2580_TPlot.pdf
TRINITY_DN60837_c0_g1:2581	si_s193	TRINITY_DN60837_c0_g1	2569	2588	2581	-30.40	-21.00	0.690789473684211	6.5	1-5,2588-2584;8-16,2583-2575;17-21,2573-2569	6-7,x-x[BULq];x-x,2574-2574[BULt]	(((((.(((((((((--(((((&)))))..)))))))))-)))))	GGUACGGUUCCAAGA--AUCGU&ACGAUUAUUUUGGAAU-GUACC	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN60837_c0_g1_2581_TPlot.pdf
TRINITY_DN6083_c0_g1:1438	si_a602	TRINITY_DN6083_c0_g1	1427	1447	1438	-30.80	-21.48	0.697402597402597	6.5	1-11,1447-1437;15-21,1433-1427	12-14,1436-1434[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	CGAUUGGCAAUGCGAAGGUUU&GAAUUUUCGCAAUUCCAAUCG	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN6083_c0_g1_1438_TPlot.pdf
TRINITY_DN6083_c0_g1:445	si_s458	TRINITY_DN6083_c0_g1	434	454	445	-29.30	-20.10	0.686006825938567	8.5	4-15,451-440;17-19,438-436	1-3,454-452[UP5];16-16,439-439[SIL];20-21,435-434[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	ACGGAAGUGAGAUAAUUGCAA&CAACAAUUAUCUCAUAUCCAA	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN6083_c0_g1_445_TPlot.pdf
TRINITY_DN6083_c0_g1:446	si_s457	TRINITY_DN6083_c0_g1	435	455	446	-30.00	-20.10	0.67	9.5	5-16,451-440;18-20,438-436	1-4,455-452[UP5];17-17,439-439[SIL];21-21,435-435[UP3]	.(((.((((((((((((....&....)))))))))))).))).	CGGAAGUGAGAUAAUUGCAAA&ACAACAAUUAUCUCAUAUCCA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN6083_c0_g1_446_TPlot.pdf
TRINITY_DN6083_c0_g1:639	si_a320	TRINITY_DN6083_c0_g1	628	649	639	-24.40	-16.40	0.672131147540984	8.5	1-4,649-646;5-17,644-632	x-x,645-645[BULt];18-21,631-628[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	GCGAGAAAAAGUCAUGGUAUGA&UUAU-CCAUGAUUUUUUUAUUC	3	0.99999899076026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN6083_c0_g1_639_TPlot.pdf
TRINITY_DN60874_c0_g1:146	si_s407	TRINITY_DN60874_c0_g1	135	155	146	-29.50	-19.50	0.661016949152542	6.5	3-6,153-150;8-17,148-139;19-21,137-135	1-2,155-154[UP5];7-7,149-149[SIL];18-18,138-138[SIL]	(((.((((((((((.((((..&..)))).)))))))))).)))	GGAGAUGUCGUUUUGCGUCCC&AAGACGAAAAACGACAUAUUC	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s407_TRINITY_DN60874_c0_g1_146_TPlot.pdf
TRINITY_DN6087_c0_g1:590	si_a80	TRINITY_DN6087_c0_g1	579	598	590	-22.10	-15.10	0.683257918552036	6	1-9,598-590;12-21,588-579	10-11,589-589[AILq]	((((((((((.-(((((((((&)))))))))..))))))))))	UUUUCUUAAUU-UGAAGAAUA&UGUUUUUCAUUAUUAAGAAAA	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN6087_c0_g1_590_TPlot.pdf
TRINITY_DN6087_c0_g1:608	si_s485	TRINITY_DN6087_c0_g1	597	617	608	-18.10	-12.30	0.679558011049724	8	1-4,617-614;7-19,611-599	5-6,613-612[SIL];20-21,598-597[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	UAUAUAUUUGAAUAAUAAUGG&CUAUAUUUAUUUAAAUAUAAA	2	0.993610737462659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN6087_c0_g1_608_TPlot.pdf
TRINITY_DN60885_c0_g1:18	si_a574	TRINITY_DN60885_c0_g1	7	28	18	-29.60	-19.30	0.652027027027027	4.5	2-5,27-24;6-13,22-15;15-21,13-7	1-1,28-28[UP5];x-x,23-23[BULt];14-14,14-14[SIL]	(((((((.((((((((.((((.&.))))-)))))))).)))))))	CUUGUUAAGAACAUACAGAUUA&GAAUC-GUAUGUUUGUAACAAG	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a574_TRINITY_DN60885_c0_g1_18_TPlot.pdf
TRINITY_DN60885_c0_g1:49	si_s72	TRINITY_DN60885_c0_g1	37	58	49	-24.10	-17.60	0.730290456431535	8	1-4,58-55;6-12,53-47;13-21,45-37	5-5,54-54[SIL];x-x,46-46[BULt]	(((((((((.(((((((.((((&)))).)))))))-)))))))))	GAGGAAAGAUGAGAAGAAAGAG&UUCUAUUUUUUU-UCUUUCCUU	4	0.999999999993102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN60885_c0_g1_49_TPlot.pdf
TRINITY_DN608_c0_g1:302	si_a289	TRINITY_DN608_c0_g1	291	311	302	-28.20	-19.10	0.677304964539007	7	2-9,310-303;11-18,301-294	1-1,311-311[UP5];10-10,302-302[SIL];19-21,293-291[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	UUAUUUUUUGAUUCCAAGCGU&UCGCUUGGAUUUAAAAAAGAU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a289_TRINITY_DN608_c0_g1_302_TPlot.pdf
TRINITY_DN608_c0_g1:303	si_a288	TRINITY_DN608_c0_g1	292	312	303	-28.20	-19.10	0.677304964539007	7.5	3-10,310-303;12-19,301-294	1-2,312-311[UP5];11-11,302-302[SIL];20-21,293-292[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	UAUUUUUUGAUUCCAAGCGUC&AUCGCUUGGAUUUAAAAAAGA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN608_c0_g1_303_TPlot.pdf
TRINITY_DN608_c0_g1:305	si_a286	TRINITY_DN608_c0_g1	294	313	305	-28.30	-21.10	0.745583038869258	3.5	1-3,313-311;5-12,310-303;14-21,301-294	4-4,x-x[BULq];13-13,302-302[SIL]	((((((((.((((((((-(((&))).)))))))).))))))))	UUUUUUGAUUCCAAGCG-UCU&AGAUCGCUUGGAUUUAAAAAA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN608_c0_g1_305_TPlot.pdf
TRINITY_DN608_c0_g1:306	si_a285	TRINITY_DN608_c0_g1	295	314	306	-28.30	-21.20	0.749116607773852	3.5	1-4,314-311;6-13,310-303;15-21,301-295	5-5,x-x[BULq];14-14,302-302[SIL]	(((((((.((((((((-((((&)))).)))))))).)))))))	UUUUUGAUUCCAAGCG-UCUU&AAGAUCGCUUGGAUUUAAAAA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN608_c0_g1_306_TPlot.pdf
TRINITY_DN608_c0_g1:307	si_a284	TRINITY_DN608_c0_g1	296	315	307	-28.30	-21.50	0.759717314487632	3.5	1-5,315-311;7-14,310-303;16-21,301-296	6-6,x-x[BULq];15-15,302-302[SIL]	((((((.((((((((-(((((&))))).)))))))).))))))	UUUUGAUUCCAAGCG-UCUUU&AAAGAUCGCUUGGAUUUAAAA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN608_c0_g1_307_TPlot.pdf
TRINITY_DN608_c0_g1:308	si_a283	TRINITY_DN608_c0_g1	297	316	308	-28.30	-20.80	0.734982332155477	4.5	2-6,315-311;8-15,310-303;17-21,301-297	1-1,316-316[UP5];7-7,x-x[BULq];16-16,302-302[SIL]	(((((.((((((((-(((((.&.))))).)))))))).)))))	UUUGAUUCCAAGCG-UCUUUA&AAAAGAUCGCUUGGAUUUAAA	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN608_c0_g1_308_TPlot.pdf
TRINITY_DN608_c0_g1:309	si_a282	TRINITY_DN608_c0_g1	298	317	309	-30.30	-19.90	0.656765676567657	6.5	3-7,315-311;9-16,310-303;18-21,301-298	1-2,317-316[UP5];8-8,x-x[BULq];17-17,302-302[SIL]	((((.((((((((-(((((..&..))))).)))))))).))))	UUGAUUCCAAGCG-UCUUUAA&GAAAAGAUCGCUUGGAUUUAA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN608_c0_g1_309_TPlot.pdf
TRINITY_DN60925_c0_g1:110	si_s876	TRINITY_DN60925_c0_g1	99	119	110	-24.20	-18.10	0.747933884297521	10	1-14,119-106	15-21,105-99[UP3]	.......((((((((((((((&)))))))))))))).......	CAUUGCAUUUGGUUCUGAGGC&GUCUUAGAACUAAAAAUAAAU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN60925_c0_g1_110_TPlot.pdf
TRINITY_DN60925_c0_g1:114	si_s872	TRINITY_DN60925_c0_g1	103	127	114	-30.70	-20.90	0.680781758957655	14.5	1-3,127-125;4-18,120-106	x-x,124-121[BULt];19-21,105-103[UP3]	...(((((((((((((((....(((&)))----)))))))))))))))...	GCAUUUGGUUCUGAGGCUCCGUGGU&ACC----GGUCUUAGAACUAAAAAU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN60925_c0_g1_114_TPlot.pdf
TRINITY_DN60925_c0_g1:118	si_s868	TRINITY_DN60925_c0_g1	107	131	118	-35.90	-24.20	0.674094707520891	15	3-7,129-125;8-21,120-107	1-2,131-130[UP5];x-x,124-121[BULt]	((((((((((((((....(((((..&..)))))----))))))))))))))	UUGGUUCUGAGGCUCCGUGGUGGAA&ACCUACC----GGUCUUAGAACUAA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN60925_c0_g1_118_TPlot.pdf
TRINITY_DN60925_c0_g1:245	si_s69	TRINITY_DN60925_c0_g1	234	254	245	-23.40	-15.40	0.658119658119658	12.5	5-9,250-246;11-21,244-234	1-4,254-251[UP5];10-10,245-245[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GAAAGAAGAAGUGUGGACACA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN60925_c0_g1_245_TPlot.pdf
TRINITY_DN60925_c0_g1:249	si_a407	TRINITY_DN60925_c0_g1	238	258	249	-19.80	-13.20	0.666666666666667	10	1-5,258-254;7-17,252-242	6-6,253-253[SIL];18-21,241-238[UP3]	....(((((((((((.(((((&))))).)))))))))))....	GAAGAAGUGUGGACACAGCAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN60925_c0_g1_249_TPlot.pdf
TRINITY_DN6092_c0_g1:1010	si_a896	TRINITY_DN6092_c0_g1	999	1019	1010	-21.60	-18.60	0.861111111111111	3.5	1-19,1019-1001	20-21,1000-999[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UAAUAUUGCUUAUUAUUAUUA&UAGUAAUAAUAAGUAAUAUAA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN6092_c0_g1_1010_TPlot.pdf
TRINITY_DN6092_c0_g1:1011	si_a895	TRINITY_DN6092_c0_g1	1000	1020	1011	-21.70	-19.60	0.903225806451613	2.5	1-20,1020-1001	21-21,1000-1000[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AAUAUUGCUUAUUAUUAUUAU&AUAGUAAUAAUAAGUAAUAUA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN6092_c0_g1_1011_TPlot.pdf
TRINITY_DN6092_c0_g1:1068	si_a85	TRINITY_DN6092_c0_g1	1057	1077	1068	-25.00	-17.10	0.684	8.5	3-7,1075-1071;9-20,1069-1058	1-2,1077-1076[UP5];8-8,1070-1070[SIL];21-21,1057-1057[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	CUGCCUUUUUUUAUUGAUGUC&UUCAUUAUUAAGAAAAGGUAA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN6092_c0_g1_1068_TPlot.pdf
TRINITY_DN6092_c0_g1:1069	si_a84	TRINITY_DN6092_c0_g1	1058	1078	1069	-24.90	-16.80	0.674698795180723	9	4-8,1075-1071;10-21,1069-1058	1-3,1078-1076[UP5];9-9,1070-1070[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UGCCUUUUUUUAUUGAUGUCG&UUUCAUUAUUAAGAAAAGGUA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN6092_c0_g1_1069_TPlot.pdf
TRINITY_DN6093_c0_g1:1481	si_a784	TRINITY_DN6093_c0_g1	1470	1489	1481	-24.70	-16.30	0.659919028340081	10	2-8,1488-1482;14-21,1477-1470	1-1,1489-1489[UP5];9-13,1481-1478[AILq]	((((((((....-(((((((.&.))))))).....))))))))	AAAAUAGAUUCG-AGAAGAGG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6093_c0_g1_1481_TPlot.pdf
TRINITY_DN6093_c1_g1:2044	si_s437	TRINITY_DN6093_c1_g1	2033	2053	2044	-19.70	-13.60	0.690355329949239	12	5-18,2049-2036	1-4,2053-2050[UP5];19-21,2035-2033[UP3]	...((((((((((((((....&....))))))))))))))...	CAUUGUGUAAUAUGUGAAAUA&AUAAUUACAUAUUAUAUAUAA	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN6093_c1_g1_2044_TPlot.pdf
TRINITY_DN6093_c1_g1:758	si_a405	TRINITY_DN6093_c1_g1	747	767	758	-19.80	-13.90	0.702020202020202	11.5	3-16,765-752	1-2,767-766[UP5];17-21,751-747[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAUUCUAUGAGCAAGACAGCA&AAUUGUUUUGUUUAUAUUUAA	3	0.999999999998053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6093_c1_g1_758_TPlot.pdf
TRINITY_DN6093_c1_g1:763	si_a400	TRINITY_DN6093_c1_g1	752	779	763	-22.80	-15.50	0.679824561403509	18	1-8,779-772;9-21,764-752	x-x,771-765[BULt]	(((((((((((((.......((((((((&))))))))-------)))))))))))))	UAUGAGCAAGACAGCAAACAGUUUUAUA&UAUAGAAU-------UGUUUUGUUUAUA	3	0.99999922428716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN6093_c1_g1_763_TPlot.pdf
TRINITY_DN6093_c1_g3:1830	si_a405	TRINITY_DN6093_c1_g3	1819	1839	1830	-19.80	-13.90	0.702020202020202	11.5	3-16,1837-1824	1-2,1839-1838[UP5];17-21,1823-1819[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAUUCUAUGAGCAAGACAGCA&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6093_c1_g3_1830_TPlot.pdf
TRINITY_DN6093_c1_g3:1835	si_a400	TRINITY_DN6093_c1_g3	1824	1851	1835	-22.80	-15.50	0.679824561403509	18	1-8,1851-1844;9-21,1836-1824	x-x,1843-1837[BULt]	(((((((((((((.......((((((((&))))))))-------)))))))))))))	UAUGAGCAAGACAGCAAACAGUUUUAUA&UAUAGAAU-------UGUUUUGUUUAUA	4	0.999999696230004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN6093_c1_g3_1835_TPlot.pdf
TRINITY_DN6094_c0_g1:841	si_s91	TRINITY_DN6094_c0_g1	823	850	841	-34.70	-27.50	0.792507204610951	12	1-16,850-835;17-21,827-823	x-x,834-828[BULt]	(((((.......((((((((((((((((&))))))))))))))))-------)))))	UCCGGAAAAGACGGCGAGGAGGAGGAGA&UUUCUUCUUCUUCGCU-------UCGGA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6094_c0_g1_841_TPlot.pdf
TRINITY_DN6094_c0_g1:845	si_s87	TRINITY_DN6094_c0_g1	834	854	845	-32.90	-23.70	0.720364741641337	12	5-20,850-835	1-4,854-851[UP5];21-21,834-834[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGCGAGGAGGAGGAGACAGC&UUCCUUUCUUCUUCUUCGCUU	3	0.99999976975344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6094_c0_g1_845_TPlot.pdf
TRINITY_DN6094_c0_g1:848	si_a498	TRINITY_DN6094_c0_g1	837	858	848	-33.50	-22.10	0.659701492537313	10	1-3,858-856;5-7,854-852;8-11,850-847;13-21,845-837	4-4,855-855[SIL];x-x,851-851[BULt];12-12,846-846[SIL]	(((((((((.((((.(((.(((&))).)))-)))).)))))))))	CGAGGAGGAGGAGACAGCAGCA&UGUCGUU-UUUCGUCUUCCUUG	4	0.999999999999936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6094_c0_g1_848_TPlot.pdf
TRINITY_DN6095_c0_g1:589	si_s779	TRINITY_DN6095_c0_g1	578	597	589	-29.30	-22.00	0.750853242320819	4	2-7,596-591;9-21,590-578	1-1,597-597[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	AGCUUGUUUUAUA-CGAUAGA&ACUAUUGCUAUAAAACAAGCU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s779_TRINITY_DN6095_c0_g1_589_TPlot.pdf
TRINITY_DN6097_c0_g1:1629	si_a20	TRINITY_DN6097_c0_g1	1618	1637	1629	-26.70	-17.50	0.655430711610487	9	2-5,1636-1633;9-21,1630-1618	1-1,1637-1637[UP5];6-8,1632-1631[AILq]	(((((((((((((..-((((.&.))))...)))))))))))))	UAGAGCUGAAAGUCU-UAGGG&GCCUAUUUAUUUUUAGUUCUA	2	0.999990364208556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN6097_c0_g1_1629_TPlot.pdf
TRINITY_DN6097_c0_g1:1752	si_s75	TRINITY_DN6097_c0_g1	1741	1761	1752	-24.00	-15.68	0.653333333333333	5	1-15,1761-1747;19-21,1743-1741	16-18,1746-1744[SIL]	(((...(((((((((((((((&)))))))))))))))...)))	AGAUAAGAAAGAAAAGAGAUA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6097_c0_g1_1752_TPlot.pdf
TRINITY_DN6099_c0_g1:10216	si_s83	TRINITY_DN6099_c0_g1	10206	10225	10216	-30.90	-22.80	0.737864077669903	6	1-5,10225-10221;7-16,10219-10210;18-21,10209-10206	6-6,10220-10220[SIL];17-17,x-x[BULq]	((((-((((((((((.(((((&))))).)))))))))).))))	GAAG-AGAAGGAGGGCGAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999999947471868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6099_c0_g1_10216_TPlot.pdf
TRINITY_DN6099_c0_g1:10220	si_s311	TRINITY_DN6099_c0_g1	10209	10230	10220	-30.60	-19.90	0.650326797385621	8	3-9,10228-10222;10-18,10220-10212;20-21,10210-10209	1-2,10230-10229[UP5];x-x,10221-10221[BULt];19-19,10211-10211[SIL]	((.(((((((((.(((((((..&..)))))))-))))))))).))	GAGAAGGAGGGCGAGAAUUUCG&GAAAAUUCU-GUCCUUCUUGUU	4	0.999999399676504	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN6099_c0_g1_10220_TPlot.pdf
TRINITY_DN6099_c0_g1:11068	si_a407	TRINITY_DN6099_c0_g1	11057	11077	11068	-19.80	-13.60	0.686868686868687	8	1-13,11077-11065;15-18,11063-11060	14-14,11064-11064[SIL];19-21,11059-11057[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AUCUGAGAAUGAACGAAACGA&UUGUUUUGUUUAUAUUUAAAU	3	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN6099_c0_g1_11068_TPlot.pdf
TRINITY_DN6099_c0_g1:11070	si_a405	TRINITY_DN6099_c0_g1	11059	11079	11070	-19.80	-13.60	0.686868686868687	8.5	3-15,11077-11065;17-20,11063-11060	1-2,11079-11078[UP5];16-16,11064-11064[SIL];21-21,11059-11059[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	CUGAGAAUGAACGAAACGAAC&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6099_c0_g1_11070_TPlot.pdf
TRINITY_DN6099_c0_g1:11269	si_s803	TRINITY_DN6099_c0_g1	11260	11278	11269	-26.00	-17.60	0.676923076923077	7.5	3-12,11276-11267;15-21,11266-11260	1-2,11278-11277[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	AAGAGGU--CGAAGAUGAGCU&AUUUUAUCUUCGUUACCUUUU	3	0.999999999251633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6099_c0_g1_11269_TPlot.pdf
TRINITY_DN6099_c0_g1:11273	si_s792	TRINITY_DN6099_c0_g1	11262	11282	11273	-28.50	-19.80	0.694736842105263	5.5	1-11,11282-11272;13-15,11270-11268;17-21,11266-11262	12-12,11271-11271[SIL];16-16,11267-11267[SIL]	(((((.(((.(((((((((((&))))))))))).))).)))))	GAGGUCGAAGAUGAGCUUGUU&AACAAGCUCGUAUUUUAUCUU	2	0.775423272578168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN6099_c0_g1_11273_TPlot.pdf
TRINITY_DN6099_c0_g1:11274	si_s791	TRINITY_DN6099_c0_g1	11263	11283	11274	-28.50	-19.00	0.666666666666667	5	2-12,11282-11272;14-16,11270-11268;18-21,11266-11263	1-1,11283-11283[UP5];13-13,11271-11271[SIL];17-17,11267-11267[SIL]	((((.(((.(((((((((((.&.))))))))))).))).))))	AGGUCGAAGAUGAGCUUGUUG&AAACAAGCUCGUAUUUUAUCU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN6099_c0_g1_11274_TPlot.pdf
TRINITY_DN6099_c0_g1:11283	si_s782	TRINITY_DN6099_c0_g1	11272	11293	11283	-30.70	-21.30	0.693811074918567	10.5	1-6,11293-11288;11-21,11282-11272	7-10,11287-11283[AILt]	(((((((((((.....((((((&))))))-....)))))))))))	AUGAGCUUGUUGGACCAGCAAU&AUUGCU-AUAAAACAAGCUCGU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s782_TRINITY_DN6099_c0_g1_11283_TPlot.pdf
TRINITY_DN6099_c0_g1:11284	si_s781	TRINITY_DN6099_c0_g1	11273	11294	11284	-30.30	-20.30	0.66996699669967	11.5	1-7,11294-11288;12-20,11282-11274	8-11,11287-11283[AILt];21-21,11273-11273[UP3]	.(((((((((.....(((((((&)))))))-....))))))))).	UGAGCUUGUUGGACCAGCAAUG&UAUUGCU-AUAAAACAAGCUCG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s781_TRINITY_DN6099_c0_g1_11284_TPlot.pdf
TRINITY_DN6099_c0_g1:11285	si_s780	TRINITY_DN6099_c0_g1	11274	11295	11285	-30.50	-20.30	0.665573770491803	12	2-8,11294-11288;13-21,11282-11274	1-1,11295-11295[UP5];9-12,11287-11283[AILt]	(((((((((.....(((((((.&.)))))))-....)))))))))	GAGCUUGUUGGACCAGCAAUGA&CUAUUGCU-AUAAAACAAGCUC	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s780_TRINITY_DN6099_c0_g1_11285_TPlot.pdf
TRINITY_DN6099_c0_g1:11462	si_s8	TRINITY_DN6099_c0_g1	11451	11471	11462	-21.30	-14.00	0.657276995305164	7	2-9,11470-11463;11-17,11461-11455;19-21,11453-11451	1-1,11471-11471[UP5];10-10,11462-11462[SIL];18-18,11454-11454[SIL]	(((.(((((((.((((((((.&.)))))))).))))))).)))	GAUUUGGUAAUUGUGAGUAAA&AUUACUUAUUAUUACUAUAUU	4	0.999999946359056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN6099_c0_g1_11462_TPlot.pdf
TRINITY_DN6099_c0_g1:12494	si_a47	TRINITY_DN6099_c0_g1	12482	12502	12494	-41.20	-26.90	0.652912621359223	6	2-7,12501-12496;9-17,12495-12487;18-21,12485-12482	1-1,12502-12502[UP5];8-8,x-x[BULq];x-x,12486-12486[BULt]	((((.(((((((((-((((((.&.)))))).)))))))))-))))	UGAGAUCGAUUCCU-GACCUGA&GUAGGUCUAGGAGUCGA-CUCG	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN6099_c0_g1_12494_TPlot.pdf
TRINITY_DN6099_c0_g1:1559	si_a503	TRINITY_DN6099_c0_g1	1548	1569	1559	-32.10	-23.10	0.719626168224299	8	1-6,1569-1564;8-19,1561-1550	7-7,1563-1562[AILt];20-21,1549-1548[UP3]	..((((((((((((..((((((&))))))-.))))))))))))..	AUUUCCAAGGAAGAAAGAAGGA&UUUUUC-GUCUUCCUUGGAAUG	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN6099_c0_g1_1559_TPlot.pdf
TRINITY_DN6099_c0_g1:1560	si_a502	TRINITY_DN6099_c0_g1	1549	1570	1560	-32.10	-23.10	0.719626168224299	8	2-7,1569-1564;9-20,1561-1550	1-1,1570-1570[UP5];8-8,1563-1562[AILt];21-21,1549-1549[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	UUUCCAAGGAAGAAAGAAGGAA&GUUUUUC-GUCUUCCUUGGAAU	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN6099_c0_g1_1560_TPlot.pdf
TRINITY_DN6099_c0_g1:1561	si_a501	TRINITY_DN6099_c0_g1	1550	1571	1561	-33.50	-23.00	0.686567164179104	9	3-8,1569-1564;10-21,1561-1550	1-2,1571-1570[UP5];9-9,1563-1562[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	UUCCAAGGAAGAAAGAAGGAAC&CGUUUUUC-GUCUUCCUUGGAA	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN6099_c0_g1_1561_TPlot.pdf
TRINITY_DN6099_c0_g1:5547	si_a499	TRINITY_DN6099_c0_g1	5536	5558	5547	-35.20	-24.96	0.709090909090909	11	1-8,5558-5551;12-21,5545-5536	9-11,5550-5546[AILt]	((((((((((.....((((((((&))))))))--...))))))))))	CCGAGGAGGAAAAGCAAAACGAC&GUCGUUUU--UCGUCUUCCUUGG	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN6099_c0_g1_5547_TPlot.pdf
TRINITY_DN6099_c0_g1:5548	si_a498	TRINITY_DN6099_c0_g1	5537	5559	5548	-33.50	-22.66	0.676417910447761	11	1-9,5559-5551;13-21,5545-5537	10-12,5550-5546[AILt]	(((((((((.....(((((((((&)))))))))--...)))))))))	CGAGGAGGAAAAGCAAAACGACA&UGUCGUUUU--UCGUCUUCCUUG	3	0.999999999026339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6099_c0_g1_5548_TPlot.pdf
TRINITY_DN6099_c0_g1:6550	si_a639	TRINITY_DN6099_c0_g1	6539	6558	6550	-23.60	-18.40	0.779661016949152	6	1-2,6558-6557;4-19,6556-6541	3-3,x-x[BULq];20-21,6540-6539[UP3]	..((((((((((((((((-((&)).))))))))))))))))..	UGAUGUUGCUCAGAAAAA-CG&CGAUUUUUUUGAGUAAUAUAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN6099_c0_g1_6550_TPlot.pdf
TRINITY_DN6099_c0_g1:8402	si_a418	TRINITY_DN6099_c0_g1	8391	8411	8402	-21.20	-14.70	0.693396226415094	12	6-19,8406-8393	1-5,8411-8407[UP5];20-21,8392-8391[UP3]	..((((((((((((((.....&.....))))))))))))))..	AACCUAUAUUUGUUUACUAGU&AUAUUUAAAUAAAUAUAGGAU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN6099_c0_g1_8402_TPlot.pdf
TRINITY_DN60_c0_g1:1852	si_s76	TRINITY_DN60_c0_g1	1840	1861	1852	-23.60	-15.80	0.669491525423729	6	1-11,1861-1851;14-18,1848-1844;19-21,1842-1840	12-13,1850-1849[SIL];x-x,1843-1843[BULt]	(((.(((((..(((((((((((&)))))))))))..)))))-)))	AAGAAAAGGUCAGAGAAGAAAU&AUUUUUUUUCUUUCCUUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN60_c0_g1_1852_TPlot.pdf
TRINITY_DN60_c0_g1:2253	si_a508	TRINITY_DN60_c0_g1	2241	2263	2253	-36.30	-26.50	0.730027548209366	7	1-3,2263-2261;4-11,2259-2252;12-20,2250-2242	x-x,2260-2260[BULt];x-x,2251-2251[BULt];21-21,2241-2241[UP3]	.(((((((((.((((((((.(((&)))-))))))))-))))))))).	UCUUACAUUCACAAGGGAGUGCG&CGU-CUUCCUUG-GAAUGUAAGG	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN60_c0_g1_2253_TPlot.pdf
TRINITY_DN60_c0_g1:2505	si_a486	TRINITY_DN60_c0_g1	2495	2515	2505	-24.90	-16.30	0.654618473895582	5	2-7,2514-2509;8-14,2507-2501;16-21,2500-2495	1-1,2515-2515[UP5];x-x,2508-2508[BULt];15-15,x-x[BULq]	((((((-(((((((.((((((.&.))))))-))))))).))))))	GAAACG-CGUAUUCGUAUAUAC&UUAUAUA-GAAUAUGUCGUUUU	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN60_c0_g1_2505_TPlot.pdf
TRINITY_DN6100_c0_g1:3148	si_s70	TRINITY_DN6100_c0_g1	3137	3157	3148	-25.80	-17.60	0.682170542635659	8	2-6,3156-3152;8-20,3150-3138	1-1,3157-3157[UP5];7-7,3151-3151[SIL];21-21,3137-3137[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	AGAAAGAGGAGAAGAAGGAGA&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6100_c0_g1_3148_TPlot.pdf
TRINITY_DN6100_c0_g1:3149	si_s69	TRINITY_DN6100_c0_g1	3138	3158	3149	-23.40	-17.60	0.752136752136752	9	3-7,3156-3152;9-21,3150-3138	1-2,3158-3157[UP5];8-8,3151-3151[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GAAAGAGGAGAAGAAGGAGAA&AACUUCUAUUUUUUUUCUUUC	3	0.999999925894147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6100_c0_g1_3149_TPlot.pdf
TRINITY_DN6100_c0_g1:3150	si_s80	TRINITY_DN6100_c0_g1	3139	3159	3150	-28.20	-19.20	0.680851063829787	6.5	1-10,3159-3150;12-20,3148-3140	11-11,3149-3149[SIL];21-21,3139-3139[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AAAGAGGAGAAGAAGGAGAAG&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6100_c0_g1_3150_TPlot.pdf
TRINITY_DN6100_c0_g1:3151	si_s79	TRINITY_DN6100_c0_g1	3140	3160	3151	-26.20	-19.30	0.736641221374046	7	2-11,3159-3150;13-21,3148-3140	1-1,3160-3160[UP5];12-12,3149-3149[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AAGAGGAGAAGAAGGAGAAGC&UUUUUUCUUUCCUUUCUUCUU	2	0.999999996776828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6100_c0_g1_3151_TPlot.pdf
TRINITY_DN6100_c0_g1:3152	si_s78	TRINITY_DN6100_c0_g1	3141	3161	3152	-26.20	-18.40	0.702290076335878	8	3-12,3159-3150;14-21,3148-3141	1-2,3161-3160[UP5];13-13,3149-3149[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGAGGAGAAGAAGGAGAAGCA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6100_c0_g1_3152_TPlot.pdf
TRINITY_DN6100_c0_g1:3153	si_s68	TRINITY_DN6100_c0_g1	3142	3162	3153	-23.10	-15.20	0.658008658008658	10	4-8,3159-3155;10-21,3153-3142	1-3,3162-3160[UP5];9-9,3154-3154[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAGGAGAAGAAGGAGAAGCAC&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6100_c0_g1_3153_TPlot.pdf
TRINITY_DN6100_c0_g1:3515	si_s86	TRINITY_DN6100_c0_g1	3504	3528	3515	-32.90	-21.50	0.653495440729483	16.5	2-8,3527-3521;9-10,3516-3515;12-21,3513-3504	1-1,3528-3528[UP5];x-x,3520-3517[BULt];11-11,3514-3514[SIL]	((((((((((.((....(((((((.&.)))))))----)).))))))))))	GGCGGAGAGGUGGCUACGGAGGGAU&UUUCCUUU----CUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6100_c0_g1_3515_TPlot.pdf
TRINITY_DN6100_c0_g1:3519	si_s631	TRINITY_DN6100_c0_g1	3504	3528	3519	-36.00	-23.50	0.652777777777778	9.5	1-12,3528-3517;14-15,3515-3514;16-21,3509-3504	13-13,3516-3516[SIL];x-x,3513-3510[BULt]	((((((....((.((((((((((((&)))))))))))).))----))))))	GGCGGAGAGGUGGCUACGGAGGGAU&AUCUUUUCGUAGGCG----UUUGCC	2	0.99945649621919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN6100_c0_g1_3519_TPlot.pdf
TRINITY_DN6100_c0_g1:3522	si_s628	TRINITY_DN6100_c0_g1	3511	3531	3522	-35.40	-24.70	0.69774011299435	8.5	1-15,3531-3517;17-18,3515-3514	16-16,3516-3516[SIL];19-21,3513-3511[UP3]	...((.(((((((((((((((&))))))))))))))).))...	AGGUGGCUACGGAGGGAUUGC&GCGAUCUUUUCGUAGGCGUUU	2	0.946990870446739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN6100_c0_g1_3522_TPlot.pdf
TRINITY_DN6100_c0_g1:3523	si_s627	TRINITY_DN6100_c0_g1	3512	3532	3523	-36.10	-24.70	0.684210526315789	8.5	2-16,3531-3517;18-19,3515-3514	1-1,3532-3532[UP5];17-17,3516-3516[SIL];20-21,3513-3512[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	GGUGGCUACGGAGGGAUUGCG&AGCGAUCUUUUCGUAGGCGUU	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN6100_c0_g1_3523_TPlot.pdf
TRINITY_DN6100_c0_g1:3524	si_s626	TRINITY_DN6100_c0_g1	3513	3533	3524	-36.10	-24.70	0.684210526315789	9.5	3-17,3531-3517;19-20,3515-3514	1-2,3533-3532[UP5];18-18,3516-3516[SIL];21-21,3513-3513[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	GUGGCUACGGAGGGAUUGCGG&AAGCGAUCUUUUCGUAGGCGU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN6100_c0_g1_3524_TPlot.pdf
TRINITY_DN6100_c0_g1:3525	si_s625	TRINITY_DN6100_c0_g1	3514	3534	3525	-37.00	-24.70	0.667567567567568	10	4-18,3531-3517;20-21,3515-3514	1-3,3534-3532[UP5];19-19,3516-3516[SIL]	((.(((((((((((((((...&...))))))))))))))).))	UGGCUACGGAGGGAUUGCGGA&CAAGCGAUCUUUUCGUAGGCG	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN6100_c0_g1_3525_TPlot.pdf
TRINITY_DN6100_c0_g1:3527	si_s623	TRINITY_DN6100_c0_g1	3516	3534	3527	-36.40	-24.10	0.662087912087912	8	1-3,3534-3532;6-20,3531-3517	4-5,x-x[BULq];21-21,3516-3516[UP3]	.(((((((((((((((--(((&)))..))))))))))))))).	GCUACGGAGGGAUUGC--GGA&UCCAAGCGAUCUUUUCGUAGG	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN6100_c0_g1_3527_TPlot.pdf
TRINITY_DN6100_c0_g1:3528	si_s622	TRINITY_DN6100_c0_g1	3517	3535	3528	-34.20	-23.80	0.695906432748538	7.5	2-4,3534-3532;7-21,3531-3517	1-1,3535-3535[UP5];5-6,x-x[BULq]	(((((((((((((((--(((.&.)))..)))))))))))))))	CUACGGAGGGAUUGC--GGAA&AUCCAAGCGAUCUUUUCGUAG	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN6100_c0_g1_3528_TPlot.pdf
TRINITY_DN6101_c0_g1:621	si_a868	TRINITY_DN6101_c0_g1	610	630	621	-24.80	-19.60	0.790322580645161	7.5	5-21,626-610	1-4,630-627[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGCAAUUAAAUCUUUAAAGGA&AUUAUUAAAGAUUUAGUUGCA	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN6101_c0_g1_621_TPlot.pdf
TRINITY_DN61027_c0_g1:156	si_a630	TRINITY_DN61027_c0_g1	142	165	156	-25.80	-17.30	0.670542635658915	8	1-6,165-160;8-13,158-153;14-21,149-142	7-7,159-159[SIL];x-x,152-150[BULt]	((((((((...((((((.((((((&)))))).))))))---))))))))	UCAGGGAAAUUGUCGACCUAGUAC&GUAUUAUGUCGAU---UUUUUUGA	4	0.999997117861142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN61027_c0_g1_156_TPlot.pdf
TRINITY_DN6102_c0_g1:4319	si_a3	TRINITY_DN6102_c0_g1	4307	4332	4319	-31.30	-20.56	0.656869009584664	15	1-4,4332-4329;7-17,4322-4312;18-21,4310-4307	5-6,4328-4323[AILt];x-x,4311-4311[BULt]	((((.(((((((((((......((((&))))----..)))))))))))-))))	GGGCGUUUCUCUUCAAGAAACGUCGG&UUGA----AAUUGAAGAGAAA-GCCU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a3_TRINITY_DN6102_c0_g1_4319_TPlot.pdf
TRINITY_DN6102_c0_g1:4340	si_a678	TRINITY_DN6102_c0_g1	4329	4350	4340	-36.30	-24.40	0.672176308539945	11.5	1-4,4350-4347;7-11,4343-4339;13-21,4337-4329	5-6,4346-4344[AILt];12-12,4338-4338[SIL]	(((((((((.(((((...((((&))))-..))))).)))))))))	UCGGGACUGGGUGGAGGUGGGA&UCCU-UAUUCACGCGGUUUCGA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN6102_c0_g1_4340_TPlot.pdf
TRINITY_DN6106_c0_g1:202	si_a410	TRINITY_DN6106_c0_g1	191	211	202	-17.80	-11.80	0.662921348314607	8	1-9,211-203;11-20,201-192	10-10,202-202[SIL];21-21,191-191[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	GUUAUUUGGAUUUGGAUAGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6106_c0_g1_202_TPlot.pdf
TRINITY_DN6106_c0_g1:341	si_s516	TRINITY_DN6106_c0_g1	330	351	341	-25.80	-16.90	0.655038759689922	7	1-9,351-343;10-20,341-331	x-x,342-342[BULt];21-21,330-330[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	UAUUUUGGAUUACAGGAUGUGG&CUAUAUUCU-UAAUUCGAAAUC	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN6106_c0_g1_341_TPlot.pdf
TRINITY_DN6106_c0_g1:39	si_a398	TRINITY_DN6106_c0_g1	28	48	39	-22.40	-14.60	0.651785714285714	15.5	7-19,42-30	1-6,48-43[UP5];20-21,29-28[UP3]	..(((((((((((((......&......)))))))))))))..	ACGGCGAAACAGUUCAUUCAA&AAUAUAGAAUUGUUUUGUUUA	4	0.999999999997542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN6106_c0_g1_39_TPlot.pdf
TRINITY_DN61091_c0_g1:242	si_s80	TRINITY_DN61091_c0_g1	230	256	242	-28.20	-18.50	0.656028368794326	14	2-6,255-251;7-19,245-233;20-21,231-230	1-1,256-256[UP5];x-x,250-246[BULt];x-x,232-232[BULt]	((.(((((((((((((.....(((((.&.)))))-----)))))))))))))-))	GACAGAAGAAAGGAGAUGCUCGAAGAC&UUUUUC-----UUUCCUUUCUUCU-UC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN61091_c0_g1_242_TPlot.pdf
TRINITY_DN61091_c0_g1:245	si_s77	TRINITY_DN61091_c0_g1	234	259	245	-25.50	-17.10	0.670588235294118	19	5-9,255-251;10-21,245-234	1-4,259-256[UP5];x-x,250-246[BULt]	((((((((((((.....(((((....&....)))))-----))))))))))))	GAAGAAAGGAGAUGCUCGAAGACAUA&UUUUUUUUC-----UUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN61091_c0_g1_245_TPlot.pdf
TRINITY_DN610_c0_g1:1731	si_s12	TRINITY_DN610_c0_g1	1720	1739	1731	-22.80	-14.82	0.65	12.5	1-6,1739-1734;11-21,1730-1720	7-10,1733-1731[AILq]	(((((((((((...-((((((&))))))....)))))))))))	AAUCAGUAUAGGAG-GGUGGG&CUUAUUAUUACUAUAUUGAUU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN610_c0_g1_1731_TPlot.pdf
TRINITY_DN610_c0_g1:1732	si_s11	TRINITY_DN610_c0_g1	1721	1740	1732	-23.60	-15.72	0.666101694915254	12.5	1-7,1740-1734;12-21,1730-1721	8-11,1733-1731[AILq]	((((((((((...-(((((((&)))))))....))))))))))	AUCAGUAUAGGAG-GGUGGGU&ACUUAUUAUUACUAUAUUGAU	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN610_c0_g1_1732_TPlot.pdf
TRINITY_DN610_c0_g2:127	si_s795	TRINITY_DN610_c0_g2	111	136	127	-30.30	-23.62	0.77953795379538	7.5	1-13,136-124;15-21,117-111	14-14,123-118[AILt]	(((((((......(((((((((((((&)))))))))))))-----.)))))))	ACGAAGAGUAAUGGAGAUACGAGCUU&AAGCUCGUAUUUU-----AUCUUCGU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN610_c0_g2_127_TPlot.pdf
TRINITY_DN610_c0_g6:1109	si_a638	TRINITY_DN610_c0_g6	1097	1118	1109	-24.40	-16.30	0.668032786885246	6.5	1-9,1118-1110;11-13,1108-1106;14-19,1104-1099	10-10,1109-1109[SIL];x-x,1105-1105[BULt];20-21,1098-1097[UP3]	..((((((.(((.(((((((((&))))))))).)))-))))))..	GUUGUUACAUCACGAAAAUCGA&UCGAUUUUUUUGA-GUAAUAUA	4	0.999997885333129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN610_c0_g6_1109_TPlot.pdf
TRINITY_DN610_c0_g6:1114	si_a633	TRINITY_DN610_c0_g6	1102	1123	1114	-26.40	-17.80	0.674242424242424	4.5	1-14,1123-1110;16-18,1108-1106;19-21,1104-1102	15-15,1109-1109[SIL];x-x,1105-1105[BULt]	(((.(((.((((((((((((((&)))))))))))))).)))-)))	UACAUCACGAAAAUCGAUGUAA&UUAUGUCGAUUUUUUUGA-GUA	4	0.999999931281327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN610_c0_g6_1114_TPlot.pdf
TRINITY_DN610_c0_g6:490	si_s40	TRINITY_DN610_c0_g6	479	499	490	-24.30	-16.00	0.65843621399177	8.5	1-10,499-490;13-19,487-481	11-12,489-488[SIL];20-21,480-479[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	ACGAUCCAACCAUUGAGGAUU&AAUCUUUAAUAAUUGGAUUUC	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN610_c0_g6_490_TPlot.pdf
TRINITY_DN6110_c0_g1:705	si_a460	TRINITY_DN6110_c0_g1	694	714	705	-21.60	-14.30	0.662037037037037	8	1-14,714-701;16-19,699-696	15-15,700-700[SIL];20-21,695-694[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GAUGCGAAUUGUAUGUGAUAA&UUGUUAUAUAUAAUAUGUAAU	2	0.997119207794828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN6110_c0_g1_705_TPlot.pdf
TRINITY_DN6110_c1_g1:138	si_a647	TRINITY_DN6110_c1_g1	125	147	138	-29.50	-20.50	0.694915254237288	6	1-13,147-135;14-16,133-131;17-18,129-128	x-x,134-134[BULt];x-x,130-130[BULt];19-21,127-125[UP3]	...((.(((.(((((((((((((&)))))))))))))-)))-))...	CUAUCACCGAAUAUAUUGCUCAA&UUGAGUAAUAUAU-CGG-GAAAU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN6110_c1_g1_138_TPlot.pdf
TRINITY_DN6110_c1_g1:139	si_a646	TRINITY_DN6110_c1_g1	126	148	139	-29.40	-21.20	0.72108843537415	5	1-14,148-135;15-17,133-131;18-19,129-128	x-x,134-134[BULt];x-x,130-130[BULt];20-21,127-126[UP3]	..((.(((.((((((((((((((&))))))))))))))-)))-))..	UAUCACCGAAUAUAUUGCUCAAA&UUUGAGUAAUAUAU-CGG-GAAA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN6110_c1_g1_139_TPlot.pdf
TRINITY_DN6110_c1_g1:141	si_a644	TRINITY_DN6110_c1_g1	128	150	141	-29.30	-21.20	0.723549488054608	6	3-16,148-135;17-19,133-131;20-21,129-128	1-2,150-149[UP5];x-x,134-134[BULt];x-x,130-130[BULt]	((.(((.((((((((((((((..&..))))))))))))))-)))-))	UCACCGAAUAUAUUGCUCAAAUU&UUUUUGAGUAAUAUAU-CGG-GA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN6110_c1_g1_141_TPlot.pdf
TRINITY_DN6110_c1_g1:142	si_a643	TRINITY_DN6110_c1_g1	130	151	142	-28.30	-20.80	0.734982332155477	8	4-17,148-135;18-20,133-131	1-3,151-149[UP5];x-x,134-134[BULt];21-21,130-130[UP3]	.(((.((((((((((((((...&...))))))))))))))-))).	ACCGAAUAUAUUGCUCAAAUUU&UUUUUUGAGUAAUAUAU-CGGG	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN6110_c1_g1_142_TPlot.pdf
TRINITY_DN6110_c1_g1:145	si_a640	TRINITY_DN6110_c1_g1	134	156	145	-24.10	-17.08	0.708713692946058	10.5	1-4,156-153;7-20,148-135	5-6,152-149[AILt];21-21,134-134[UP3]	.((((((((((((((....((((&))))--..)))))))))))))).	AAUAUAUUGCUCAAAUUUUAGUC&GAUU--UUUUUGAGUAAUAUAUC	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN6110_c1_g1_145_TPlot.pdf
TRINITY_DN6110_c1_g1:146	si_a639	TRINITY_DN6110_c1_g1	135	157	146	-23.60	-17.18	0.727966101694915	10.5	2-5,156-153;8-21,148-135	1-1,157-157[UP5];6-7,152-149[AILt]	((((((((((((((....((((.&.))))--..))))))))))))))	AUAUAUUGCUCAAAUUUUAGUCA&CGAUU--UUUUUGAGUAAUAUAU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN6110_c1_g1_146_TPlot.pdf
TRINITY_DN6110_c1_g1:147	si_a638	TRINITY_DN6110_c1_g1	136	158	147	-24.40	-15.98	0.654918032786885	12.5	3-6,156-153;9-21,148-136	1-2,158-157[UP5];7-8,152-149[AILt]	(((((((((((((....((((..&..))))--..)))))))))))))	UAUAUUGCUCAAAUUUUAGUCAG&UCGAUU--UUUUUGAGUAAUAUA	3	0.999999987265962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN6110_c1_g1_147_TPlot.pdf
TRINITY_DN61119_c0_g1:1520	si_a457	TRINITY_DN61119_c0_g1	1509	1529	1520	-23.50	-15.70	0.668085106382979	6	2-10,1528-1520;12-20,1518-1510	1-1,1529-1529[UP5];11-11,1519-1519[SIL];21-21,1509-1509[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UCGUGUUAUAAAUAACAAUAU&UUGUUGUUAUAUAUAAUAUGU	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN61119_c0_g1_1520_TPlot.pdf
TRINITY_DN61119_c0_g1:1521	si_a456	TRINITY_DN61119_c0_g1	1510	1530	1521	-22.80	-15.50	0.679824561403509	7	3-11,1528-1520;13-21,1518-1510	1-2,1530-1529[UP5];12-12,1519-1519[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	CGUGUUAUAAAUAACAAUAUU&AUUGUUGUUAUAUAUAAUAUG	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN61119_c0_g1_1521_TPlot.pdf
TRINITY_DN61119_c0_g1:2103	si_s68	TRINITY_DN61119_c0_g1	2091	2112	2103	-23.10	-15.60	0.675324675324675	10	3-11,2110-2102;13-21,2099-2091	1-2,2112-2111[UP5];12-12,2101-2100[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	AAAGAAAAAUUGGUAGAGGUCG&CAACUUCUAUU-UUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN61119_c0_g1_2103_TPlot.pdf
TRINITY_DN61119_c0_g1:317	si_a20	TRINITY_DN61119_c0_g1	306	325	317	-26.70	-17.80	0.666666666666667	11.5	1-3,325-323;9-21,318-306	4-8,322-319[AILq]	(((((((((((((....-(((&))).....)))))))))))))	UAGAGCUGGAAAUUAAC-GGC&GCCUAUUUAUUUUUAGUUCUA	2	0.999852888465746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN61119_c0_g1_317_TPlot.pdf
TRINITY_DN61119_c0_g1:624	si_a69	TRINITY_DN61119_c0_g1	610	633	624	-24.00	-15.60	0.65	9	1-12,633-622;13-17,618-614;19-21,612-610	x-x,621-619[BULt];18-18,613-613[SIL]	(((.(((((...((((((((((((&))))))))))))---))))).)))	GUGCGAAACUUAAGUUUGAAAGAA&UUCUUUCAAAUU---GUUUUUCAU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN61119_c0_g1_624_TPlot.pdf
TRINITY_DN61119_c0_g1:625	si_a68	TRINITY_DN61119_c0_g1	611	634	625	-25.40	-17.20	0.677165354330709	5.5	1-13,634-622;14-18,618-614;20-21,612-611	x-x,621-619[BULt];19-19,613-613[SIL]	((.(((((...(((((((((((((&)))))))))))))---))))).))	UGCGAAACUUAAGUUUGAAAGAAG&CUUCUUUCAAAUU---GUUUUUCA	4	0.999999999505151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN61119_c0_g1_625_TPlot.pdf
TRINITY_DN6111_c0_g1:1781	si_a497	TRINITY_DN6111_c0_g1	1770	1790	1781	-32.00	-22.20	0.69375	10	6-21,1785-1770	1-5,1790-1786[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAGGAUGAAAAACAUGAA&AUGUCGUUUUUCGUCUUCCUU	4	0.999999995107032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6111_c0_g1_1781_TPlot.pdf
TRINITY_DN6111_c0_g1:480	si_a475	TRINITY_DN6111_c0_g1	468	489	480	-23.50	-15.60	0.663829787234043	6	2-15,488-475;16-19,473-470	1-1,489-489[UP5];x-x,474-474[BULt];20-21,469-468[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	CACUAUGAUAACAAUGAUUAUU&UGUAAUUAUUGUUAU-AUAGAA	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN6111_c0_g1_480_TPlot.pdf
TRINITY_DN6112_c0_g1:5045	si_s692	TRINITY_DN6112_c0_g1	5033	5054	5045	-24.20	-18.40	0.760330578512397	9.5	1-10,5054-5045;11-18,5043-5036	x-x,5044-5044[BULt];19-21,5035-5033[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UCGAGAUCGACGUGGUUGGACU&AGUUUAAUUA-GUCGAUUUAUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN6112_c0_g1_5045_TPlot.pdf
TRINITY_DN6112_c0_g1:5375	si_s93	TRINITY_DN6112_c0_g1	5364	5386	5375	-34.80	-23.20	0.666666666666667	9	1-3,5386-5384;4-14,5381-5371;17-20,5368-5365	x-x,5383-5382[BULt];15-16,5370-5369[SIL];21-21,5364-5364[UP3]	.((((..(((((((((((..(((&)))--)))))))))))..)))).	CAUCCUUAGCGGAGAAGACGGGA&UCU--UCUUCUUCGCUUCGGAUU	2	0.999999302779082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN6112_c0_g1_5375_TPlot.pdf
TRINITY_DN6112_c0_g1:5376	si_s92	TRINITY_DN6112_c0_g1	5365	5386	5376	-34.90	-24.20	0.693409742120344	7	1-4,5386-5383;5-15,5381-5371;18-21,5368-5365	x-x,5382-5382[BULt];16-17,5370-5369[SIL]	((((..(((((((((((.((((&))))-)))))))))))..))))	AUCCUUAGCGGAGAAGACGGGA&UUCU-UCUUCUUCGCUUCGGAU	4	0.999998994210941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN6112_c0_g1_5376_TPlot.pdf
TRINITY_DN6112_c0_g1:5384	si_s86	TRINITY_DN6112_c0_g1	5371	5395	5384	-32.90	-22.80	0.693009118541034	11.5	1-4,5395-5392;5-10,5389-5384;11-21,5381-5371	x-x,5391-5390[BULt];x-x,5383-5382[BULt]	(((((((((((..((((((..((((&))))--))))))--)))))))))))	AGCGGAGAAGACGGGAGAGCCGAGA&UUUC--CUUUCU--UCUUCUUCGCU	2	0.999999965700379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6112_c0_g1_5384_TPlot.pdf
TRINITY_DN6112_c0_g1:5385	si_s85	TRINITY_DN6112_c0_g1	5372	5394	5385	-33.80	-22.70	0.671597633136095	11.5	1-3,5394-5392;6-11,5389-5384;12-21,5381-5372	4-5,5391-5390[SIL];x-x,5383-5382[BULt]	((((((((((..((((((..(((&)))..))))))--))))))))))	GCGGAGAAGACGGGAGAGCCGAG&CUUUCCUUUCU--UCUUCUUCGC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6112_c0_g1_5385_TPlot.pdf
TRINITY_DN6112_c0_g1:6240	si_a500	TRINITY_DN6112_c0_g1	6229	6257	6240	-34.40	-22.90	0.665697674418605	23	1-6,6257-6252;7-20,6243-6230	x-x,6251-6244[BULt];21-21,6229-6229[UP3]	.((((((((((((((........((((((&))))))--------)))))))))))))).	GCCGGGGAGGAUGAGCUGACCGCGGACGG&UCGUUU--------UUCGUCUUCCUUGGA	4	0.99999999196975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN6112_c0_g1_6240_TPlot.pdf
TRINITY_DN6112_c0_g1:6934	si_a287	TRINITY_DN6112_c0_g1	6923	6943	6934	-29.20	-19.80	0.678082191780822	8.5	1-11,6943-6933;13-16,6931-6928	12-12,6932-6932[SIL];17-21,6927-6923[UP3]	.....((((.(((((((((((&))))))))))).)))).....	CAGAAUUAGUUCCAAGUGAUC&GAUCGCUUGGAUUUAAAAAAG	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN6112_c0_g1_6934_TPlot.pdf
TRINITY_DN6112_c0_g1:6937	si_a284	TRINITY_DN6112_c0_g1	6926	6946	6937	-28.30	-19.80	0.699646643109541	9.5	4-14,6943-6933;16-19,6931-6928	1-3,6946-6944[UP5];15-15,6932-6932[SIL];20-21,6927-6926[UP3]	..((((.(((((((((((...&...))))))))))).))))..	AAUUAGUUCCAAGUGAUCGGC&AAAGAUCGCUUGGAUUUAAAA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN6112_c0_g1_6937_TPlot.pdf
TRINITY_DN6112_c0_g1:8729	si_a117	TRINITY_DN6112_c0_g1	8718	8740	8729	-31.00	-20.60	0.664516129032258	12.5	3-8,8738-8733;9-19,8730-8720	1-2,8740-8739[UP5];x-x,8732-8731[BULt];20-21,8719-8718[UP3]	..(((((((((((..((((((..&..))))))--)))))))))))..	UCGUUAUGGAGCACAGGCUCGCU&UACGAGCU--UGUUUUAUAGCAA	2	0.97754125916965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN6112_c0_g1_8729_TPlot.pdf
TRINITY_DN6112_c0_g1:8730	si_a116	TRINITY_DN6112_c0_g1	8719	8741	8730	-31.10	-20.60	0.662379421221865	13.5	4-9,8738-8733;10-20,8730-8720	1-3,8741-8739[UP5];x-x,8732-8731[BULt];21-21,8719-8719[UP3]	.(((((((((((..((((((...&...))))))--))))))))))).	CGUUAUGGAGCACAGGCUCGCUU&AUACGAGCU--UGUUUUAUAGCA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN6112_c0_g1_8730_TPlot.pdf
TRINITY_DN6112_c0_g1:8747	si_s611	TRINITY_DN6112_c0_g1	8736	8756	8747	-28.20	-21.26	0.753900709219858	9	1-9,8756-8748;14-21,8743-8736	10-13,8747-8744[SIL]	((((((((....(((((((((&)))))))))....))))))))	UCGCUUGGUUGGAGGAAAGAU&AUCUUUUUUAAAUCCAAGCGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN6112_c0_g1_8747_TPlot.pdf
TRINITY_DN6112_c0_g1:8748	si_s610	TRINITY_DN6112_c0_g1	8737	8757	8748	-27.20	-19.46	0.715441176470588	9	2-10,8756-8748;15-21,8743-8737	1-1,8757-8757[UP5];11-14,8747-8744[SIL]	(((((((....(((((((((.&.)))))))))....)))))))	CGCUUGGUUGGAGGAAAGAUG&AAUCUUUUUUAAAUCCAAGCG	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN6112_c0_g1_8748_TPlot.pdf
TRINITY_DN6112_c0_g1:8749	si_s535	TRINITY_DN6112_c0_g1	8738	8758	8749	-28.60	-19.00	0.664335664335664	8	1-8,8758-8751;11-19,8748-8740	9-10,8750-8749[SIL];20-21,8739-8738[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	GCUUGGUUGGAGGAAAGAUGA&UCAUUUUUGAUCCGAUCAAAA	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN6112_c0_g1_8749_TPlot.pdf
TRINITY_DN6112_c0_g1:8750	si_s534	TRINITY_DN6112_c0_g1	8739	8759	8750	-28.80	-19.00	0.659722222222222	8	2-9,8758-8751;12-20,8748-8740	1-1,8759-8759[UP5];10-11,8750-8749[SIL];21-21,8739-8739[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CUUGGUUGGAGGAAAGAUGAA&AUCAUUUUUGAUCCGAUCAAA	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN6112_c0_g1_8750_TPlot.pdf
TRINITY_DN6112_c0_g1:8754	si_s76	TRINITY_DN6112_c0_g1	8743	8763	8754	-23.60	-15.40	0.652542372881356	8	2-7,8762-8757;9-18,8755-8746	1-1,8763-8763[UP5];8-8,8756-8756[SIL];19-21,8745-8743[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	GUUGGAGGAAAGAUGAAAAAA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6112_c0_g1_8754_TPlot.pdf
TRINITY_DN6112_c0_g1:9399	si_a471	TRINITY_DN6112_c0_g1	9388	9408	9399	-21.10	-15.20	0.720379146919431	14	6-19,9403-9390	1-5,9408-9404[UP5];20-21,9389-9388[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAGUAGCAAUAGUUGCUUCAU&AAUAUGUAAUUAUUGUUAUAU	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6112_c0_g1_9399_TPlot.pdf
TRINITY_DN6112_c0_g1:9400	si_a470	TRINITY_DN6112_c0_g1	9389	9409	9400	-21.30	-15.20	0.713615023474178	15	7-20,9403-9390	1-6,9409-9404[UP5];21-21,9389-9389[UP3]	.((((((((((((((......&......)))))))))))))).	AGUAGCAAUAGUUGCUUCAUG&UAAUAUGUAAUUAUUGUUAUA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN6112_c0_g1_9400_TPlot.pdf
TRINITY_DN6112_c0_g1:9401	si_a446	TRINITY_DN6112_c0_g1	9390	9410	9401	-25.50	-17.70	0.694117647058824	7.5	1-7,9410-9404;9-21,9402-9390	8-8,9403-9403[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GUAGCAAUAGUUGCUUCAUGU&AUAUGAGAUAAUUGUUGUUAU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN6112_c0_g1_9401_TPlot.pdf
TRINITY_DN61149_c0_g1:465	si_s86	TRINITY_DN61149_c0_g1	450	474	465	-32.90	-26.80	0.814589665653495	7.5	1-16,474-459;17-20,454-451	x-x,458-455[BULt];21-21,450-450[UP3]	.((((....((((((((((((((((&))))))))))))))))----)))).	CGCGGCUCAGGAGGAAGAGAGGAAA&UUUCCUUUCUUCUUCU----UCGCU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN61149_c0_g1_465_TPlot.pdf
TRINITY_DN61149_c0_g1:472	si_s79	TRINITY_DN61149_c0_g1	461	486	472	-26.20	-19.20	0.732824427480916	15	3-8,484-479;9-21,473-461	1-2,486-485[UP5];x-x,478-474[BULt]	(((((((((((((.....((((((..&..))))))-----)))))))))))))	AGGAAGAGAGGAAAAAGCAGGAAAUC&UUUUUUCU-----UUCCUUUCUUCUU	0	0.57768837320099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN61149_c0_g1_472_TPlot.pdf
TRINITY_DN61159_c0_g1:125	si_a506	TRINITY_DN61159_c0_g1	113	134	125	-33.40	-21.80	0.652694610778443	4.5	1-14,134-121;15-20,119-114	x-x,120-120[BULt];21-21,113-113[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	CUACAUUGUCAAGGAAGGUGAA&UUCGUCUUCCUUGG-AAUGUAA	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN61159_c0_g1_125_TPlot.pdf
TRINITY_DN61159_c0_g1:162	si_a491	TRINITY_DN61159_c0_g1	151	174	162	-29.90	-19.70	0.658862876254181	11	1-4,174-171;5-14,167-158;17-21,155-151	x-x,170-168[BULt];15-16,157-156[SIL]	(((((..((((((((((...((((&))))---))))))))))..)))))	GAUGAUCAGCGGCAUGUGAGUCUA&UAGA---AUAUGUCGUUUUUCGUC	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN61159_c0_g1_162_TPlot.pdf
TRINITY_DN61164_c0_g1:634	si_a154	TRINITY_DN61164_c0_g1	622	643	634	-27.00	-18.20	0.674074074074074	11	2-10,642-634;11-17,632-626	1-1,643-643[UP5];x-x,633-633[BULt];18-21,625-622[UP3]	....(((((((.(((((((((.&.)))))))))-)))))))....	AUCCGAUUGGCACUUAGAGCGC&UUGUUUUAAG-GUCAAUCUAUU	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN61164_c0_g1_634_TPlot.pdf
TRINITY_DN61164_c0_g1:636	si_a152	TRINITY_DN61164_c0_g1	624	644	636	-29.20	-19.10	0.654109589041096	9.5	1-3,644-642;5-12,641-634;13-19,632-626	4-4,x-x[BULq];x-x,633-633[BULt];20-21,625-624[UP3]	..(((((((.((((((((-(((&))).))))))))-)))))))..	CCGAUUGGCACUUAGAGC-GCA&UGUUGUUUUAAG-GUCAAUCUA	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN61164_c0_g1_636_TPlot.pdf
TRINITY_DN6116_c0_g1:1042	si_s787	TRINITY_DN6116_c0_g1	1031	1051	1042	-26.20	-18.90	0.721374045801527	13.5	7-21,1045-1031	1-6,1051-1046[UP5]	(((((((((((((((......&......)))))))))))))))	AGAGUGCGAGUUUGUCUCAAG&UAUAAAACAAGCUCGUAUUUU	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN6116_c0_g1_1042_TPlot.pdf
TRINITY_DN6116_c0_g1:1248	si_s795	TRINITY_DN6116_c0_g1	1237	1258	1248	-30.30	-20.00	0.66006600660066	8.5	2-8,1257-1251;10-13,1248-1245;15-20,1243-1238	1-1,1258-1258[UP5];9-9,1250-1249[AILt];14-14,1244-1244[SIL];21-21,1237-1237[UP3]	.((((((.((((..(((((((.&.)))))))-.)))).)))))).	CCGAAGAGGAAACGACGGGCUG&AAGCUCGU-AUUUUAUCUUCGU	4	0.999994064120275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN6116_c0_g1_1248_TPlot.pdf
TRINITY_DN6116_c0_g1:1486	si_s66	TRINITY_DN6116_c0_g1	1475	1495	1486	-26.30	-19.10	0.726235741444867	7.5	1-15,1495-1481	16-21,1480-1475[UP3]	......(((((((((((((((&)))))))))))))))......	CGCCUCAAGAUGGAAGUUGCU&AGCAACUUCUAUUUUUUUUCU	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN6116_c0_g1_1486_TPlot.pdf
TRINITY_DN6116_c0_g1:1494	si_s58	TRINITY_DN6116_c0_g1	1483	1503	1494	-29.30	-19.86	0.677815699658703	10	1-4,1503-1500;9-21,1495-1483	5-8,1499-1496[SIL]	(((((((((((((....((((&))))....)))))))))))))	GAUGGAAGUUGCUCCAGUGGA&UUCAAGUUAGCAACUUCUAUU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN6116_c0_g1_1494_TPlot.pdf
TRINITY_DN6116_c0_g1:1607	si_a699	TRINITY_DN6116_c0_g1	1596	1617	1607	-33.60	-23.70	0.705357142857143	8.5	2-9,1616-1609;10-11,1607-1606;13-19,1604-1598	1-1,1617-1617[UP5];x-x,1608-1608[BULt];12-12,1605-1605[SIL];20-21,1597-1596[UP3]	..(((((((.((.((((((((.&.))))))))-)).)))))))..	GGUGGAGUGGGCGCAGUUGUGA&ACACAACUG-GUACAUUCCAAA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a699_TRINITY_DN6116_c0_g1_1607_TPlot.pdf
TRINITY_DN6116_c0_g1:1610	si_a697	TRINITY_DN6116_c0_g1	1598	1619	1610	-35.50	-23.50	0.661971830985915	9	4-11,1616-1609;12-13,1607-1606;15-21,1604-1598	1-3,1619-1617[UP5];x-x,1608-1608[BULt];14-14,1605-1605[SIL]	(((((((.((.((((((((...&...))))))))-)).)))))))	UGGAGUGGGCGCAGUUGUGACG&GAACACAACUG-GUACAUUCCA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN6116_c0_g1_1610_TPlot.pdf
TRINITY_DN6116_c0_g1:2225	si_a794	TRINITY_DN6116_c0_g1	2213	2233	2225	-28.60	-19.40	0.678321678321678	8	1-5,2233-2229;7-14,2228-2221;15-20,2219-2214	6-6,x-x[BULq];x-x,2220-2220[BULt];21-21,2213-2213[UP3]	.((((((.((((((((-(((((&))))).))))))))-)))))).	AUCGGAUGUGGGGAGU-GAAGA&UUUUCUAUUUUCCA-AUCCGAA	4	0.998853101299611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN6116_c0_g1_2225_TPlot.pdf
TRINITY_DN6116_c0_g1:2226	si_a793	TRINITY_DN6116_c0_g1	2214	2234	2226	-28.50	-19.60	0.687719298245614	7.5	1-6,2234-2229;8-15,2228-2221;16-21,2219-2214	7-7,x-x[BULq];x-x,2220-2220[BULt]	((((((.((((((((-((((((&)))))).))))))))-))))))	UCGGAUGUGGGGAGU-GAAGAG&UUUUUCUAUUUUCCA-AUCCGA	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN6116_c0_g1_2226_TPlot.pdf
TRINITY_DN6116_c0_g1:2280	si_a745	TRINITY_DN6116_c0_g1	2268	2291	2280	-42.00	-28.10	0.669047619047619	12.5	1-4,2291-2288;5-5,2286-2286;6-10,2284-2280;13-21,2276-2268	x-x,2287-2287[BULt];x-x,2285-2285[BULt];11-12,2279-2277[AILt]	(((((((((...(((((.(.((((&))))-)-)))))-..)))))))))	GAGGGGGGUGAAGUGGCGCGAGGG&CCCU-G-GCCAU-GAACCUCCUUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN6116_c0_g1_2280_TPlot.pdf
TRINITY_DN6116_c0_g1:2406	si_a808	TRINITY_DN6116_c0_g1	2394	2415	2406	-34.90	-23.10	0.66189111747851	9	2-10,2414-2406;13-14,2402-2401;16-20,2399-2395	1-1,2415-2415[UP5];11-12,2405-2403[AILt];15-15,2400-2400[SIL];21-21,2394-2394[UP3]	.(((((.((...(((((((((.&.)))))))))-..)).))))).	AUCUUCGUCGGCCGCUUCGGAC&AUCCGAAGCG-AAGAAGAAGAA	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a808_TRINITY_DN6116_c0_g1_2406_TPlot.pdf
TRINITY_DN6116_c0_g1:2407	si_a807	TRINITY_DN6116_c0_g1	2395	2416	2407	-34.80	-22.90	0.658045977011494	9	3-11,2414-2406;14-15,2402-2401;17-21,2399-2395	1-2,2416-2415[UP5];12-13,2405-2403[AILt];16-16,2400-2400[SIL]	(((((.((...(((((((((..&..)))))))))-..)).)))))	UCUUCGUCGGCCGCUUCGGACU&AAUCCGAAGCG-AAGAAGAAGA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a807_TRINITY_DN6116_c0_g1_2407_TPlot.pdf
TRINITY_DN6116_c0_g1:2490	si_s99	TRINITY_DN6116_c0_g1	2477	2499	2490	-34.60	-23.30	0.673410404624277	10.5	1-10,2499-2490;11-16,2487-2482	x-x,2489-2488[BULt];17-21,2481-2477[UP3]	.....((((((..((((((((((&))))))))))--)))))).....	UCCGACAGUCCACGAGGCGAAGA&UCUUCGCUUC--GGAUUGGAAAA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN6116_c0_g1_2490_TPlot.pdf
TRINITY_DN6116_c0_g1:2537	si_a275	TRINITY_DN6116_c0_g1	2527	2547	2537	-37.00	-24.30	0.656756756756757	6	1-6,2547-2542;7-9,2540-2538;11-15,2536-2532;17-21,2531-2527	x-x,2541-2541[BULt];10-10,2537-2537[SIL];16-16,x-x[BULq]	(((((-(((((.(((.((((((&))))))-))).))))).)))))	CAAGC-AUCUUGUCGCUGGGCG&CGCCUA-CGAAAAGAUCGCUUG	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a275_TRINITY_DN6116_c0_g1_2537_TPlot.pdf
TRINITY_DN6116_c0_g1:2566	si_s898	TRINITY_DN6116_c0_g1	2555	2575	2566	-30.70	-21.30	0.693811074918567	10	1-12,2575-2564	13-21,2563-2555[UP3]	.........((((((((((((&)))))))))))).........	CCACGUCAGGAGGAGAAAGCC&GGCUUUCUCUUCAAUUUCAAU	2	0.993284599651729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN6116_c0_g1_2566_TPlot.pdf
TRINITY_DN6116_c0_g1:2567	si_s897	TRINITY_DN6116_c0_g1	2556	2576	2567	-31.30	-21.30	0.680511182108626	10	2-13,2575-2564	1-1,2576-2576[UP5];14-21,2563-2556[UP3]	........((((((((((((.&.))))))))))))........	CACGUCAGGAGGAGAAAGCCG&AGGCUUUCUCUUCAAUUUCAA	2	0.994829164283728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN6116_c0_g1_2567_TPlot.pdf
TRINITY_DN6116_c0_g1:2568	si_s896	TRINITY_DN6116_c0_g1	2557	2577	2568	-31.60	-21.30	0.674050632911392	11	3-14,2575-2564	1-2,2577-2576[UP5];15-21,2563-2557[UP3]	.......((((((((((((..&..)))))))))))).......	ACGUCAGGAGGAGAAAGCCGC&UAGGCUUUCUCUUCAAUUUCA	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN6116_c0_g1_2568_TPlot.pdf
TRINITY_DN6116_c0_g1:2569	si_s895	TRINITY_DN6116_c0_g1	2558	2578	2569	-31.10	-21.30	0.684887459807074	11.5	4-15,2575-2564	1-3,2578-2576[UP5];16-21,2563-2558[UP3]	......((((((((((((...&...))))))))))))......	CGUCAGGAGGAGAAAGCCGCA&AUAGGCUUUCUCUUCAAUUUC	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN6116_c0_g1_2569_TPlot.pdf
TRINITY_DN6116_c0_g1:2570	si_s894	TRINITY_DN6116_c0_g1	2559	2579	2570	-29.10	-21.30	0.731958762886598	12.5	5-16,2575-2564	1-4,2579-2576[UP5];17-21,2563-2559[UP3]	.....((((((((((((....&....)))))))))))).....	GUCAGGAGGAGAAAGCCGCAG&AAUAGGCUUUCUCUUCAAUUU	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6116_c0_g1_2570_TPlot.pdf
TRINITY_DN6116_c0_g1:2571	si_s893	TRINITY_DN6116_c0_g1	2560	2580	2571	-29.10	-21.30	0.731958762886598	13.5	6-17,2575-2564	1-5,2580-2576[UP5];18-21,2563-2560[UP3]	....((((((((((((.....&.....))))))))))))....	UCAGGAGGAGAAAGCCGCAGA&AAAUAGGCUUUCUCUUCAAUU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN6116_c0_g1_2571_TPlot.pdf
TRINITY_DN6116_c0_g1:2572	si_s892	TRINITY_DN6116_c0_g1	2561	2581	2572	-29.50	-21.30	0.722033898305085	14.5	7-18,2575-2564	1-6,2581-2576[UP5];19-21,2563-2561[UP3]	...((((((((((((......&......))))))))))))...	CAGGAGGAGAAAGCCGCAGAA&UAAAUAGGCUUUCUCUUCAAU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN6116_c0_g1_2572_TPlot.pdf
TRINITY_DN6116_c0_g1:2573	si_s891	TRINITY_DN6116_c0_g1	2562	2582	2573	-29.60	-21.30	0.719594594594595	15.5	8-19,2575-2564	1-7,2582-2576[UP5];20-21,2563-2562[UP3]	..((((((((((((.......&.......))))))))))))..	AGGAGGAGAAAGCCGCAGAAG&AUAAAUAGGCUUUCUCUUCAA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN6116_c0_g1_2573_TPlot.pdf
TRINITY_DN6116_c0_g1:2574	si_s890	TRINITY_DN6116_c0_g1	2563	2583	2574	-29.50	-21.30	0.722033898305085	16.5	9-20,2575-2564	1-8,2583-2576[UP5];21-21,2563-2563[UP3]	.((((((((((((........&........)))))))))))).	GGAGGAGAAAGCCGCAGAAGC&AAUAAAUAGGCUUUCUCUUCA	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN6116_c0_g1_2574_TPlot.pdf
TRINITY_DN6116_c0_g1:2575	si_s889	TRINITY_DN6116_c0_g1	2564	2584	2575	-28.80	-20.90	0.725694444444444	17.5	10-21,2575-2564	1-9,2584-2576[UP5]	((((((((((((.........&.........))))))))))))	GAGGAGAAAGCCGCAGAAGCC&AAAUAAAUAGGCUUUCUCUUC	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN6116_c0_g1_2575_TPlot.pdf
TRINITY_DN61178_c0_g1:129	si_s380	TRINITY_DN61178_c0_g1	118	140	129	-40.00	-27.20	0.68	10	1-3,140-138;5-9,136-132;10-15,129-124;18-21,121-118	4-4,137-137[SIL];x-x,131-130[BULt];16-17,123-122[SIL]	((((..((((((..(((((.(((&))).)))))--))))))..))))	AAUGGGAGGCGGUGGCAUGGGAG&CUCGCGUGU--CCGCCUUACAUU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN61178_c0_g1_129_TPlot.pdf
TRINITY_DN6117_c1_g1:82	si_s77	TRINITY_DN6117_c1_g1	70	91	82	-25.50	-16.82	0.659607843137255	6.5	1-13,91-79;17-21,74-70	14-16,78-75[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	GAGGAUCCCGAAAGAAAGAGAA&UUUUUUUUCUUUC-CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6117_c1_g1_82_TPlot.pdf
TRINITY_DN61184_c0_g1:554	si_a123	TRINITY_DN61184_c0_g1	543	563	554	-26.60	-18.80	0.706766917293233	6	1-14,563-550;16-18,548-546	15-15,549-549[SIL];19-21,545-543[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	UCCCUAGUGUUAUAGAACAAG&CUUGUUUUAUAGCAAUAGUAA	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN61184_c0_g1_554_TPlot.pdf
TRINITY_DN6118_c0_g1:619	si_a320	TRINITY_DN6118_c0_g1	608	628	619	-24.40	-16.20	0.663934426229508	9	1-8,628-621;10-11,619-618;13-21,616-608	9-9,620-620[SIL];12-12,617-617[SIL]	(((((((((.((.((((((((&)))))))).)).)))))))))	GGAUGGGGACAUGGUGGAUGG&UUAUCCAUGAUUUUUUUAUUC	4	0.999999963006205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN6118_c0_g1_619_TPlot.pdf
TRINITY_DN61197_c0_g1:478	si_a789	TRINITY_DN61197_c0_g1	467	487	478	-24.80	-16.80	0.67741935483871	9	1-4,487-484;6-8,482-480;10-19,478-469	5-5,483-483[SIL];9-9,479-479[SIL];20-21,468-467[UP3]	..((((((((((.(((.((((&)))).))).))))))))))..	AAUGGGAAGUGGUGAAUUAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999998351858	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN61197_c0_g1_478_TPlot.pdf
TRINITY_DN61197_c0_g1:515	si_a65	TRINITY_DN61197_c0_g1	505	524	515	-27.70	-19.20	0.693140794223827	6.5	2-12,523-513;15-20,511-506	1-1,524-524[UP5];13-14,512-512[AILq];21-21,505-505[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	CGAGCGAC-UGAAAGGAGCGU&UCGCUUCUUUCAAAUUGUUUU	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN61197_c0_g1_515_TPlot.pdf
TRINITY_DN6121_c0_g1:1169	si_a776	TRINITY_DN6121_c0_g1	1158	1178	1169	-27.10	-18.00	0.664206642066421	10	2-7,1177-1172;9-16,1170-1163	1-1,1178-1178[UP5];8-8,1171-1171[SIL];17-21,1162-1158[UP3]	.....((((((((.((((((.&.)))))).)))))))).....	AAUGGAGAAGGGUAGAGUCAG&UUGAUUCAACUCUUCUAUUUU	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN6121_c0_g1_1169_TPlot.pdf
TRINITY_DN6122_c0_g2:663	si_a629	TRINITY_DN6122_c0_g2	652	672	663	-26.30	-20.80	0.790874524714829	5.5	1-2,672-671;4-20,669-653	3-3,670-670[SIL];21-21,652-652[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	AGAGAGAAUCGACGUAAUUCG&CGUAUUAUGUCGAUUUUUUUG	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN6122_c0_g2_663_TPlot.pdf
TRINITY_DN6122_c0_g2:735	si_a470	TRINITY_DN6122_c0_g2	724	744	735	-21.30	-13.90	0.652582159624413	12	6-20,739-725	1-5,744-740[UP5];21-21,724-724[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAUAGCGAUAAUUAUAAAGGU&UAAUAUGUAAUUAUUGUUAUA	3	0.999999760239991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN6122_c0_g2_735_TPlot.pdf
TRINITY_DN61236_c0_g1:192	si_s831	TRINITY_DN61236_c0_g1	181	201	192	-24.00	-16.60	0.691666666666667	13	7-20,195-182	1-6,201-196[UP5];21-21,181-181[UP3]	.((((((((((((((......&......)))))))))))))).	AUCUUUCAAGUUGUUGAAACC&AUGAAAAACAAUUUGAAAGAA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s831_TRINITY_DN61236_c0_g1_192_TPlot.pdf
TRINITY_DN61237_c0_g1:50	si_a384	TRINITY_DN61237_c0_g1	37	59	50	-25.80	-16.80	0.651162790697674	7.5	1-10,59-50;11-15,47-43;17-21,41-37	x-x,49-48[BULt];16-16,42-42[SIL]	(((((.(((((..((((((((((&))))))))))--))))).)))))	CUAUGGUCUUAGCAUUUGAGAUC&GAUUUCGAAU--UAAGAAUAUAG	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a384_TRINITY_DN61237_c0_g1_50_TPlot.pdf
TRINITY_DN61238_c0_g1:24	si_s179	TRINITY_DN61238_c0_g1	14	33	24	-35.10	-23.20	0.660968660968661	5	1-4,33-30;6-12,28-22;14-21,21-14	5-5,29-29[SIL];13-13,x-x[BULq]	((((((((-(((((((.((((&)))).))))))).))))))))	UAGUUGUU-CUUGGGCUUCUU&AAGAUGCCCGAGUAACGAUUA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s179_TRINITY_DN61238_c0_g1_24_TPlot.pdf
TRINITY_DN61238_c0_g1:27	si_s176	TRINITY_DN61238_c0_g1	17	36	27	-36.70	-25.20	0.686648501362398	5	1-7,36-30;9-15,28-22;17-21,21-17	8-8,29-29[SIL];16-16,x-x[BULq]	(((((-(((((((.(((((((&))))))).))))))).)))))	UUGUU-CUUGGGCUUCUUUGC&GUAAAGAUGCCCGAGUAACGA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s176_TRINITY_DN61238_c0_g1_27_TPlot.pdf
TRINITY_DN61238_c0_g1:28	si_s175	TRINITY_DN61238_c0_g1	18	37	28	-38.10	-25.30	0.664041994750656	5.5	1-8,37-30;10-16,28-22;18-21,21-18	9-9,29-29[SIL];17-17,x-x[BULq]	((((-(((((((.((((((((&)))))))).))))))).))))	UGUU-CUUGGGCUUCUUUGCU&GGUAAAGAUGCCCGAGUAACG	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s175_TRINITY_DN61238_c0_g1_28_TPlot.pdf
TRINITY_DN61250_c0_g1:1273	si_s290	TRINITY_DN61250_c0_g1	1262	1282	1273	-38.10	-29.00	0.761154855643045	6.5	2-4,1281-1279;7-16,1276-1267;18-21,1265-1262	1-1,1282-1282[UP5];5-6,1278-1277[SIL];17-17,1266-1266[SIL]	((((.((((((((((..(((.&.)))..)))))))))).))))	GCGACUCCAAUCGACGUGGCA&CGCCUAGUCGAUUGGAAUUGC	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN61250_c0_g1_1273_TPlot.pdf
TRINITY_DN61281_c0_g1:224	si_s3	TRINITY_DN61281_c0_g1	214	233	224	-21.20	-13.90	0.655660377358491	5.5	2-12,232-222;15-21,220-214	1-1,233-233[UP5];13-14,221-221[AILq]	(((((((.-(((((((((((.&.)))))))))))..)))))))	AGUAAUGC-GGGUAAUAUAAC&UUUAUAUUACUUAUUAUUACU	2	0.999094643521448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN61281_c0_g1_224_TPlot.pdf
TRINITY_DN61281_c0_g1:343	si_a548	TRINITY_DN61281_c0_g1	332	352	343	-27.20	-21.00	0.772058823529412	3	2-13,351-340;15-20,338-333	1-1,352-352[UP5];14-14,339-339[SIL];21-21,332-332[UP3]	.((((((.((((((((((((.&.)))))))))))).)))))).	AAGAUAAUGAAAUAGAUUGAU&UUCAAUCUAUUUCUUUAUCUC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN61281_c0_g1_343_TPlot.pdf
TRINITY_DN6129_c0_g1:2641	si_s797	TRINITY_DN6129_c0_g1	2630	2650	2641	-30.00	-20.10	0.67	11	1-6,2650-2645;8-11,2643-2640;14-20,2637-2631	7-7,2644-2644[SIL];12-13,2639-2638[SIL];21-21,2630-2630[UP3]	.(((((((..((((.((((((&)))))).))))..))))))).	GAACGAAGUCGAGGAGCGGGC&GCUCGUAUUUUAUCUUCGUUA	3	0.999998291633412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN6129_c0_g1_2641_TPlot.pdf
TRINITY_DN6129_c0_g1:2642	si_s796	TRINITY_DN6129_c0_g1	2631	2651	2642	-30.30	-19.70	0.65016501650165	10	2-7,2650-2645;9-12,2643-2640;15-21,2637-2631	1-1,2651-2651[UP5];8-8,2644-2644[SIL];13-14,2639-2638[SIL]	(((((((..((((.((((((.&.)))))).))))..)))))))	AACGAAGUCGAGGAGCGGGCG&AGCUCGUAUUUUAUCUUCGUU	4	0.999999994461891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN6129_c0_g1_2642_TPlot.pdf
TRINITY_DN6129_c0_g1:3152	si_s55	TRINITY_DN6129_c0_g1	3142	3161	3152	-30.80	-21.30	0.691558441558442	6.5	1-8,3161-3154;11-11,3151-3151;13-21,3150-3142	9-10,3153-3152[SIL];12-12,x-x[BULq]	(((((((((-(..((((((((&))))))))..).)))))))))	AGGAGUUGC-ACGUUGAAAUC&GAUUUCAAGUUAGCAACUUCU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN6129_c0_g1_3152_TPlot.pdf
TRINITY_DN6129_c0_g1:3244	si_a870	TRINITY_DN6129_c0_g1	3233	3253	3244	-24.80	-17.40	0.701612903225806	14.5	7-18,3247-3236	1-6,3253-3248[UP5];19-21,3235-3233[UP3]	...((((((((((((......&......))))))))))))...	GAAGCAGCUAAAUCUGCCAAA&UAUUAAAGAUUUAGUUGCAAU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN6129_c0_g1_3244_TPlot.pdf
TRINITY_DN6129_c0_g1:5978	si_a626	TRINITY_DN6129_c0_g1	5967	5987	5978	-30.20	-20.18	0.668211920529801	10.5	1-4,5987-5984;8-18,5980-5970	5-7,5983-5981[SIL];19-21,5969-5967[UP3]	...(((((((((((...((((&))))...)))))))))))...	GCUAGUCGACAUGAGCAGCCU&AGGCGUAUUAUGUCGAUUUUU	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN6129_c0_g1_5978_TPlot.pdf
TRINITY_DN6129_c0_g1:5979	si_a625	TRINITY_DN6129_c0_g1	5968	5988	5979	-30.60	-20.18	0.659477124183007	10.5	2-5,5987-5984;9-19,5980-5970	1-1,5988-5988[UP5];6-8,5983-5981[SIL];20-21,5969-5968[UP3]	..(((((((((((...((((.&.))))...)))))))))))..	CUAGUCGACAUGAGCAGCCUC&UAGGCGUAUUAUGUCGAUUUU	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN6129_c0_g1_5979_TPlot.pdf
TRINITY_DN6129_c0_g1:6139	si_s191	TRINITY_DN6129_c0_g1	6126	6148	6139	-26.60	-17.90	0.672932330827068	10	4-15,6145-6134;17-21,6130-6126	1-3,6148-6146[UP5];16-16,6133-6131[AILt]	(((((...((((((((((((...&...))))))))))))--.)))))	UACAUCCCCCAAAGUGAUCGGAC&UAACGAUUAUUUUGG--AAUGUA	0	0.125041924441849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN6129_c0_g1_6139_TPlot.pdf
TRINITY_DN6129_c0_g1:6190	si_a764	TRINITY_DN6129_c0_g1	6179	6199	6190	-28.90	-20.10	0.695501730103806	7.5	1-3,6199-6197;5-12,6195-6188;15-21,6185-6179	4-4,6196-6196[SIL];13-14,6187-6186[SIL]	(((((((..((((((((.(((&))).))))))))..)))))))	UUGAGUCUCUCAGGAGCGCAA&UUGGGUUUUUGAUUGAUUCAA	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6129_c0_g1_6190_TPlot.pdf
TRINITY_DN6129_c0_g1:6191	si_a763	TRINITY_DN6129_c0_g1	6180	6200	6191	-28.80	-19.50	0.677083333333333	8.5	2-4,6199-6197;6-13,6195-6188;16-21,6185-6180	1-1,6200-6200[UP5];5-5,6196-6196[SIL];14-15,6187-6186[SIL]	((((((..((((((((.(((.&.))).))))))))..))))))	UGAGUCUCUCAGGAGCGCAAU&UUUGGGUUUUUGAUUGAUUCA	2	0.999885305960264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN6129_c0_g1_6191_TPlot.pdf
TRINITY_DN6129_c0_g1:6264	si_a68	TRINITY_DN6129_c0_g1	6253	6273	6264	-25.40	-16.70	0.65748031496063	8.5	1-6,6273-6268;9-21,6265-6253	7-8,6267-6266[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UGGGAGGCGAUUUUCGAGGAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN6129_c0_g1_6264_TPlot.pdf
TRINITY_DN612_c0_g1:1858	si_s78	TRINITY_DN612_c0_g1	1846	1867	1858	-26.20	-18.70	0.713740458015267	6	1-11,1867-1857;12-13,1855-1854;15-21,1852-1846	x-x,1856-1856[BULt];14-14,1853-1853[SIL]	(((((((.((.(((((((((((&)))))))))))-)).)))))))	GGAGGAACGGCAAAGGAAAAGA&UUUUUUUCUUU-CCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN612_c0_g1_1858_TPlot.pdf
TRINITY_DN612_c0_g1:2099	si_s742	TRINITY_DN612_c0_g1	2088	2108	2099	-31.40	-21.40	0.681528662420382	9	1-9,2108-2100;11-16,2098-2093	10-10,2099-2099[SIL];17-21,2092-2088[UP3]	.....((((((.(((((((((&))))))))).)))))).....	AGAAUGGUCAAAUUGUUCACC&GGUGAAUAGAUUGACCUUAAA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN612_c0_g1_2099_TPlot.pdf
TRINITY_DN612_c0_g1:2636	si_a319	TRINITY_DN612_c0_g1	2625	2645	2636	-22.40	-16.50	0.736607142857143	9.5	1-18,2645-2628	19-21,2627-2625[UP3]	...((((((((((((((((((&))))))))))))))))))...	CGAAAGAGGAUUGUGGGUGGA&UUUAUCCAUGAUUUUUUUAUU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN612_c0_g1_2636_TPlot.pdf
TRINITY_DN612_c0_g1:304	si_s804	TRINITY_DN612_c0_g1	293	313	304	-27.90	-22.60	0.810035842293907	8	1-16,313-298	17-21,297-293[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGUAUGGUAGCGAAGAUGAGA&UUUUAUCUUCGUUACCUUUUC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN612_c0_g1_304_TPlot.pdf
TRINITY_DN612_c0_g1:305	si_s803	TRINITY_DN612_c0_g1	294	314	305	-26.00	-23.60	0.907692307692308	6.5	1-17,314-298	18-21,297-294[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUAUGGUAGCGAAGAUGAGAU&AUUUUAUCUUCGUUACCUUUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN612_c0_g1_305_TPlot.pdf
TRINITY_DN612_c0_g1:3461	si_a464	TRINITY_DN612_c0_g1	3450	3471	3461	-19.60	-13.20	0.673469387755102	7.5	1-8,3471-3464;9-17,3462-3454	x-x,3463-3463[BULt];18-21,3453-3450[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	UGUUGUUACAUAUAUGUAUAUA&UAUAUAUA-AUAUGUAAUUAUU	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN612_c0_g1_3461_TPlot.pdf
TRINITY_DN612_c0_g1:3464	si_a462	TRINITY_DN612_c0_g1	3452	3473	3464	-21.20	-14.10	0.665094339622642	6.5	2-10,3472-3464;11-19,3462-3454	1-1,3473-3473[UP5];x-x,3463-3463[BULt];20-21,3453-3452[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	UUGUUACAUAUAUGUAUAUAAA&GUUAUAUAUA-AUAUGUAAUUA	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN612_c0_g1_3464_TPlot.pdf
TRINITY_DN612_c0_g1:3465	si_a461	TRINITY_DN612_c0_g1	3453	3474	3465	-21.50	-14.10	0.655813953488372	7.5	3-11,3472-3464;12-20,3462-3454	1-2,3474-3473[UP5];x-x,3463-3463[BULt];21-21,3453-3453[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	UGUUACAUAUAUGUAUAUAAAA&UGUUAUAUAUA-AUAUGUAAUU	2	0.995656031900421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN612_c0_g1_3465_TPlot.pdf
TRINITY_DN6131_c0_g1:447	si_a73	TRINITY_DN6131_c0_g1	436	456	447	-21.90	-14.50	0.662100456621005	9	2-15,455-442	1-1,456-456[UP5];16-21,441-436[UP3]	......((((((((((((((.&.))))))))))))))......	GAGAAAGAAGAAUAAUUUGAU&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999996719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6131_c0_g1_447_TPlot.pdf
TRINITY_DN6131_c0_g1:448	si_a72	TRINITY_DN6131_c0_g1	437	457	448	-21.90	-14.50	0.662100456621005	9.5	3-16,455-442	1-2,457-456[UP5];17-21,441-437[UP3]	.....((((((((((((((..&..)))))))))))))).....	AGAAAGAAGAAUAAUUUGAUG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999999922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN6131_c0_g1_448_TPlot.pdf
TRINITY_DN6135_c0_g1:1711	si_a134	TRINITY_DN6135_c0_g1	1700	1720	1711	-28.20	-18.50	0.656028368794326	7.5	1-3,1720-1718;5-8,1716-1713;10-12,1711-1709;14-21,1707-1700	4-4,1717-1717[SIL];9-9,1712-1712[SIL];13-13,1708-1708[SIL]	((((((((.(((.((((.(((&))).)))).))).))))))))	ACGACGAUAGAUAGCUAGUGC&GCAAUAGUAAUUAAUCGUUGU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN6135_c0_g1_1711_TPlot.pdf
TRINITY_DN6136_c0_g1:1490	si_s81	TRINITY_DN6136_c0_g1	1479	1499	1490	-28.90	-22.40	0.775086505190311	5	1-9,1499-1491;11-20,1489-1480	10-10,1490-1490[SIL];21-21,1479-1479[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	CGAAGAAGAAAAGGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6136_c0_g1_1490_TPlot.pdf
TRINITY_DN6136_c0_g1:1495	si_s76	TRINITY_DN6136_c0_g1	1484	1504	1495	-23.60	-16.50	0.699152542372881	4.5	2-14,1503-1491;16-21,1489-1484	1-1,1504-1504[UP5];15-15,1490-1490[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGAAAAGGAAGAAGAAAAGC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6136_c0_g1_1495_TPlot.pdf
TRINITY_DN6136_c0_g1:2379	si_a510	TRINITY_DN6136_c0_g1	2366	2388	2379	-37.00	-25.96	0.701621621621622	12.5	1-10,2388-2379;14-20,2373-2367	11-13,2378-2374[AILt];21-21,2366-2366[UP3]	.(((((((.....((((((((((&))))))))))--...))))))).	AGCCUUACCGAAGCCGAGGGAGG&UCUUCCUUGG--AAUGUAAGGCG	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a510_TRINITY_DN6136_c0_g1_2379_TPlot.pdf
TRINITY_DN6136_c0_g1:2452	si_a69	TRINITY_DN6136_c0_g1	2441	2464	2452	-24.00	-17.30	0.720833333333333	10.5	2-9,2463-2456;10-20,2452-2442	1-1,2464-2464[UP5];x-x,2455-2453[BULt];21-21,2441-2441[UP3]	.(((((((((((...((((((((.&.))))))))---))))))))))).	UUGGGAGACGAUGCUUUGAAAGAU&UUCUUUCAA---AUUGUUUUUCAU	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN6136_c0_g1_2452_TPlot.pdf
TRINITY_DN6136_c0_g1:2461	si_a496	TRINITY_DN6136_c0_g1	2442	2470	2461	-32.40	-21.90	0.675925925925926	20.5	2-11,2469-2460;12-20,2451-2443	1-1,2470-2470[UP5];x-x,2459-2452[BULt];21-21,2442-2442[UP3]	.(((((((((........((((((((((.&.))))))))))--------))))))))).	UGGGAGACGAUGCUUUGAAAGAUGACAUC&UAUGUCGUUUU--------UCGUCUUCCU	4	0.999999996483306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN6136_c0_g1_2461_TPlot.pdf
TRINITY_DN6136_c0_g1:2749	si_s48	TRINITY_DN6136_c0_g1	2738	2758	2749	-28.80	-22.90	0.795138888888889	5.5	1-16,2758-2743;18-21,2741-2738	17-17,2742-2742[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	GCUACUUUGAGGUCCGGUUAU&AUAAUUGGAUUUCAAGUUAGC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN6136_c0_g1_2749_TPlot.pdf
TRINITY_DN6136_c0_g1:2750	si_s47	TRINITY_DN6136_c0_g1	2739	2759	2750	-26.30	-19.80	0.752851711026616	6.5	2-17,2758-2743;19-21,2741-2739	1-1,2759-2759[UP5];18-18,2742-2742[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	CUACUUUGAGGUCCGGUUAUA&AAUAAUUGGAUUUCAAGUUAG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN6136_c0_g1_2750_TPlot.pdf
TRINITY_DN6136_c0_g1:2755	si_s42	TRINITY_DN6136_c0_g1	2744	2767	2755	-24.90	-17.72	0.711646586345381	14	1-4,2767-2764;7-21,2758-2744	5-6,2763-2759[AILt]	(((((((((((((((.....((((&))))---..)))))))))))))))	UUGAGGUCCGGUUAUAUGUUGAGA&UCUU---UAAUAAUUGGAUUUCAA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN6136_c0_g1_2755_TPlot.pdf
TRINITY_DN6136_c0_g1:2756	si_s41	TRINITY_DN6136_c0_g1	2745	2768	2756	-25.00	-16.82	0.6728	14.5	2-5,2767-2764;8-21,2758-2745	1-1,2768-2768[UP5];6-7,2763-2759[AILt]	((((((((((((((.....((((.&.))))---..))))))))))))))	UGAGGUCCGGUUAUAUGUUGAGAG&AUCUU---UAAUAAUUGGAUUUCA	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN6136_c0_g1_2756_TPlot.pdf
TRINITY_DN6136_c0_g1:2855	si_s80	TRINITY_DN6136_c0_g1	2843	2869	2855	-28.20	-19.20	0.680851063829787	14	2-8,2868-2862;9-14,2856-2851;15-21,2849-2843	1-1,2869-2869[UP5];x-x,2861-2857[BULt];x-x,2850-2850[BULt]	(((((((.((((((.....(((((((.&.)))))))-----))))))-)))))))	GAAGAGGAAGAGGAUUUCCAAGAAGAC&UUUUUCUU-----UCCUUU-CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6136_c0_g1_2855_TPlot.pdf
TRINITY_DN6136_c0_g1:88	si_a860	TRINITY_DN6136_c0_g1	77	97	88	-24.30	-15.80	0.650205761316872	9	4-11,94-87;14-21,84-77	1-3,97-95[UP5];12-13,86-85[SIL]	((((((((..((((((((...&...))))))))..))))))))	AAUCUUUAUAAGUUGGAUGCA&GAAAUCCAAUUAUUAAAGAUU	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN6136_c0_g1_88_TPlot.pdf
TRINITY_DN61372_c0_g1:1437	si_s70	TRINITY_DN61372_c0_g1	1426	1446	1437	-25.80	-20.00	0.775193798449612	7.5	3-7,1444-1440;9-21,1438-1426	1-2,1446-1445[UP5];8-8,1439-1439[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GGAAAGAGAGAAAUUGGAACA&ACUUCUAUUUUUUUUCUUUCC	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN61372_c0_g1_1437_TPlot.pdf
TRINITY_DN61372_c0_g1:1563	si_s7	TRINITY_DN61372_c0_g1	1552	1571	1563	-21.70	-14.40	0.663594470046083	7.5	1-7,1571-1565;10-20,1563-1553	8-9,1564-1564[AILq];21-21,1552-1552[UP3]	.(((((((((((.-(((((((&)))))))..))))))))))).	UUGUAGUAGUAGC-AGUAAUG&UAUUACUUAUUAUUACUAUAU	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN61372_c0_g1_1563_TPlot.pdf
TRINITY_DN61372_c0_g1:1771	si_s433	TRINITY_DN61372_c0_g1	1760	1780	1771	-21.10	-14.10	0.66824644549763	8.5	4-18,1777-1763	1-3,1780-1778[UP5];19-21,1762-1760[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUUUGAUAUGUAAUUAUUAUU&AACAAUAAUUACAUAUUAUAU	2	0.975799899695385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN61372_c0_g1_1771_TPlot.pdf
TRINITY_DN61372_c0_g1:1773	si_s431	TRINITY_DN61372_c0_g1	1762	1782	1773	-21.10	-14.40	0.682464454976303	4.5	2-4,1781-1779;6-20,1777-1763	1-1,1782-1782[UP5];5-5,1778-1778[SIL];21-21,1762-1762[UP3]	.(((((((((((((((.(((.&.))).))))))))))))))).	UUGAUAUGUAAUUAUUAUUAA&AUAACAAUAAUUACAUAUUAU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN61372_c0_g1_1773_TPlot.pdf
TRINITY_DN61372_c0_g1:1774	si_s430	TRINITY_DN61372_c0_g1	1763	1783	1774	-21.30	-14.30	0.671361502347418	5.5	3-5,1781-1779;7-21,1777-1763	1-2,1783-1782[UP5];6-6,1778-1778[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UGAUAUGUAAUUAUUAUUAAU&UAUAACAAUAAUUACAUAUUA	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN61372_c0_g1_1774_TPlot.pdf
TRINITY_DN6137_c0_g1:1088	si_s572	TRINITY_DN6137_c0_g1	1077	1097	1088	-30.10	-20.30	0.674418604651163	8.5	1-13,1097-1085	14-21,1084-1077[UP3]	........(((((((((((((&)))))))))))))........	AAAUGCAAUAUUCCUUGUCCU&GGGACAAGGAAUAAAAAAAUC	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s572_TRINITY_DN6137_c0_g1_1088_TPlot.pdf
TRINITY_DN6137_c0_g1:1094	si_s566	TRINITY_DN6137_c0_g1	1083	1110	1094	-30.70	-21.20	0.690553745928339	17	1-6,1110-1105;7-19,1097-1085	x-x,1104-1098[BULt];20-21,1084-1083[UP3]	..(((((((((((((.......((((((&))))))-------)))))))))))))..	AAUAUUCCUUGUCCUUAUUACAGAAAAU&AUUUUC-------GGGACAAGGAAUAAA	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s566_TRINITY_DN6137_c0_g1_1094_TPlot.pdf
TRINITY_DN6137_c0_g1:1096	si_s564	TRINITY_DN6137_c0_g1	1085	1112	1096	-31.20	-21.00	0.673076923076923	18	3-8,1110-1105;9-21,1097-1085	1-2,1112-1111[UP5];x-x,1104-1098[BULt]	(((((((((((((.......((((((..&..))))))-------)))))))))))))	UAUUCCUUGUCCUUAUUACAGAAAAUUC&AUAUUUUC-------GGGACAAGGAAUA	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s564_TRINITY_DN6137_c0_g1_1096_TPlot.pdf
TRINITY_DN6139_c0_g1:217	si_a396	TRINITY_DN6139_c0_g1	206	226	217	-24.70	-16.10	0.651821862348178	9.5	4-12,223-215;14-20,213-207	1-3,226-224[UP5];13-13,214-214[SIL];21-21,206-206[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	CGCAAAACCGUUCUGUAUCAA&AGAAUAUAGAAUUGUUUUGUU	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN6139_c0_g1_217_TPlot.pdf
TRINITY_DN6139_c0_g1:218	si_a395	TRINITY_DN6139_c0_g1	207	227	218	-24.70	-16.10	0.651821862348178	10	5-13,223-215;15-21,213-207	1-4,227-224[UP5];14-14,214-214[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GCAAAACCGUUCUGUAUCAAG&AAGAAUAUAGAAUUGUUUUGU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN6139_c0_g1_218_TPlot.pdf
TRINITY_DN6139_c0_g1:258	si_s814	TRINITY_DN6139_c0_g1	247	269	258	-26.60	-17.80	0.669172932330827	10.5	1-3,269-267;5-7,265-263;8-20,260-248	4-4,266-266[SIL];x-x,262-261[BULt];21-21,247-247[UP3]	.(((((((((((((..(((.(((&))).)))--))))))))))))).	CCAUUAUUGAGGGAAUAGGCGAC&GUUACCU--UUUCUUAAUAAUGA	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN6139_c0_g1_258_TPlot.pdf
TRINITY_DN6139_c0_g1:259	si_s813	TRINITY_DN6139_c0_g1	248	270	259	-27.10	-19.10	0.70479704797048	9.5	1-4,270-267;6-8,265-263;9-21,260-248	5-5,266-266[SIL];x-x,262-261[BULt]	(((((((((((((..(((.((((&)))).)))--)))))))))))))	CAUUAUUGAGGGAAUAGGCGACG&CGUUACCU--UUUCUUAAUAAUG	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN6139_c0_g1_259_TPlot.pdf
TRINITY_DN6139_c0_g1:260	si_s812	TRINITY_DN6139_c0_g1	249	271	260	-26.40	-18.00	0.681818181818182	9.5	1-5,271-267;7-9,265-263;10-21,260-249	6-6,266-266[SIL];x-x,262-261[BULt]	((((((((((((..(((.(((((&))))).)))--))))))))))))	AUUAUUGAGGGAAUAGGCGACGA&UCGUUACCU--UUUCUUAAUAAU	4	0.999175696282049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN6139_c0_g1_260_TPlot.pdf
TRINITY_DN6139_c0_g1:662	si_s82	TRINITY_DN6139_c0_g1	649	671	662	-28.90	-21.58	0.746712802768166	12	1-10,671-662;13-20,657-650	11-12,661-658[AILt];21-21,649-649[UP3]	.((((((((....((((((((((&))))))))))--..)))))))).	UAGAAGAAGUUGUGGGAGAGGAA&UUUCUUUCCU--UUCUUCUUCUU	4	0.999999999339336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6139_c0_g1_662_TPlot.pdf
TRINITY_DN6139_c0_g1:663	si_s81	TRINITY_DN6139_c0_g1	650	672	663	-28.90	-21.68	0.750173010380623	11	2-11,671-662;14-21,657-650	1-1,672-672[UP5];12-13,661-658[AILt]	((((((((....((((((((((.&.))))))))))--..))))))))	AGAAGAAGUUGUGGGAGAGGAAC&UUUUCUUUCCU--UUCUUCUUCU	4	0.999999995936609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6139_c0_g1_663_TPlot.pdf
TRINITY_DN6139_c0_g1:665	si_s79	TRINITY_DN6139_c0_g1	649	674	665	-26.20	-17.40	0.66412213740458	13.5	4-13,671-662;14-20,656-650	1-3,674-672[UP5];x-x,661-657[BULt];21-21,649-649[UP3]	.(((((((.....((((((((((...&...))))))))))-----))))))).	UAGAAGAAGUUGUGGGAGAGGAACAG&UUUUUUCUUUCCU-----UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6139_c0_g1_665_TPlot.pdf
TRINITY_DN6139_c0_g1:666	si_s83	TRINITY_DN6139_c0_g1	651	676	666	-30.90	-21.50	0.6957928802589	8.5	1-4,676-673;5-14,671-662;15-21,657-651	x-x,672-672[BULt];x-x,661-658[BULt]	(((((((....((((((((((.((((&))))-))))))))))----)))))))	GAAGAAGUUGUGGGAGAGGAACAGAG&UUCU-UUCCUUUCUU----CUUCUUC	2	0.999999999786239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6139_c0_g1_666_TPlot.pdf
TRINITY_DN6139_c0_g1:923	si_s897	TRINITY_DN6139_c0_g1	909	932	923	-31.30	-23.40	0.747603833865815	9.5	1-12,932-921;13-21,917-909	x-x,920-918[BULt]	(((((((((...((((((((((((&))))))))))))---)))))))))	UUGAAGUUGGUAGAGGGAAAGCUU&AGGCUUUCUCUU---CAAUUUCAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN6139_c0_g1_923_TPlot.pdf
TRINITY_DN6139_c0_g1:924	si_s896	TRINITY_DN6139_c0_g1	910	933	924	-31.60	-23.80	0.753164556962025	6	1-13,933-921;14-21,917-910	x-x,920-918[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	UGAAGUUGGUAGAGGGAAAGCUUA&UAGGCUUUCUCUU---CAAUUUCA	2	0.50807572329439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN6139_c0_g1_924_TPlot.pdf
TRINITY_DN6139_c0_g1:925	si_s895	TRINITY_DN6139_c0_g1	911	934	925	-31.10	-22.30	0.717041800643087	7	2-14,933-921;15-21,917-911	1-1,934-934[UP5];x-x,920-918[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	GAAGUUGGUAGAGGGAAAGCUUAA&AUAGGCUUUCUCUU---CAAUUUC	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN6139_c0_g1_925_TPlot.pdf
TRINITY_DN613_c0_g1:693	si_s13	TRINITY_DN613_c0_g1	681	702	693	-22.90	-15.40	0.672489082969432	8.5	1-7,702-696;9-11,694-692;13-21,689-681	8-8,695-695[SIL];12-12,691-690[AILt]	(((((((((..(((.(((((((&))))))).)))-.)))))))))	CAAUCAAUGGAGGUUGUAAUAA&UUAUUAUUACU-AUAUUGAUUG	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN613_c0_g1_693_TPlot.pdf
TRINITY_DN61406_c0_g1:717	si_a868	TRINITY_DN61406_c0_g1	706	726	717	-24.80	-18.60	0.75	3.5	1-20,726-707	21-21,706-706[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GGUAAUUAGAUUUUUAAUAAU&AUUAUUAAAGAUUUAGUUGCA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN61406_c0_g1_717_TPlot.pdf
TRINITY_DN6140_c0_g1:193	si_s191	TRINITY_DN6140_c0_g1	181	202	193	-26.60	-18.30	0.68796992481203	8.5	1-12,202-191;13-20,189-182	x-x,190-190[BULt];21-21,181-181[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	AGCAUUUCAGGAGUGAUUGUUG&UAACGAUUAUUU-UGGAAUGUA	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN6140_c0_g1_193_TPlot.pdf
TRINITY_DN6140_c1_g1:1625	si_a398	TRINITY_DN6140_c1_g1	1614	1634	1625	-22.40	-16.00	0.714285714285714	9.5	3-8,1632-1627;10-20,1625-1615	1-2,1634-1633[UP5];9-9,1626-1626[SIL];21-21,1614-1614[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	GAAGCAAAACGGAUCUGUAAG&AAUAUAGAAUUGUUUUGUUUA	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN6140_c1_g1_1625_TPlot.pdf
TRINITY_DN6140_c1_g1:2409	si_s72	TRINITY_DN6140_c1_g1	2398	2418	2409	-24.10	-18.00	0.746887966804979	6.5	1-4,2418-2415;7-21,2412-2398	5-6,2414-2413[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	AAGGGAAGAAAAAAGCGAGGA&UUCUAUUUUUUUUCUUUCCUU	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6140_c1_g1_2409_TPlot.pdf
TRINITY_DN6140_c1_g1:2423	si_s82	TRINITY_DN6140_c1_g1	2412	2433	2423	-28.90	-18.80	0.650519031141869	7.5	2-8,2432-2426;10-19,2423-2414	1-1,2433-2433[UP5];9-9,2425-2424[AILt];20-21,2413-2412[UP3]	..((((((((((..(((((((.&.)))))))-.))))))))))..	GCGAGGAAGAAAAAGAAAGAAC&UUUCUUUC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6140_c1_g1_2423_TPlot.pdf
TRINITY_DN6140_c1_g1:597	si_a80	TRINITY_DN6140_c1_g1	586	606	597	-22.10	-14.50	0.656108597285068	10.5	1-15,606-592	16-21,591-586[UP3]	......(((((((((((((((&)))))))))))))))......	UUAGACUGAUAAUGGAGGGCA&UGUUUUUCAUUAUUAAGAAAA	3	0.999999833457762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN6140_c1_g1_597_TPlot.pdf
TRINITY_DN6140_c1_g1:598	si_a79	TRINITY_DN6140_c1_g1	587	607	598	-22.20	-15.40	0.693693693693694	9.5	1-16,607-592	17-21,591-587[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAGACUGAUAAUGGAGGGCAA&UUGUUUUUCAUUAUUAAGAAA	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN6140_c1_g1_598_TPlot.pdf
TRINITY_DN6140_c1_g1:600	si_a77	TRINITY_DN6140_c1_g1	589	609	600	-22.20	-15.40	0.693693693693694	10.5	3-18,607-592	1-2,609-608[UP5];19-21,591-589[UP3]	...((((((((((((((((..&..))))))))))))))))...	GACUGAUAAUGGAGGGCAAGA&AAUUGUUUUUCAUUAUUAAGA	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN6140_c1_g1_600_TPlot.pdf
TRINITY_DN6140_c1_g1:601	si_a76	TRINITY_DN6140_c1_g1	590	610	601	-21.20	-15.40	0.726415094339623	11.5	4-19,607-592	1-3,610-608[UP5];20-21,591-590[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACUGAUAAUGGAGGGCAAGAU&AAAUUGUUUUUCAUUAUUAAG	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN6140_c1_g1_601_TPlot.pdf
TRINITY_DN6140_c1_g1:603	si_a74	TRINITY_DN6140_c1_g1	592	613	603	-22.20	-17.90	0.806306306306306	8	1-4,613-610;6-21,607-592	5-5,609-608[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	UGAUAAUGGAGGGCAAGAUUGA&UCAA-AUUGUUUUUCAUUAUUA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN6140_c1_g1_603_TPlot.pdf
TRINITY_DN6140_c1_g1:604	si_a73	TRINITY_DN6140_c1_g1	593	614	604	-21.90	-17.60	0.80365296803653	8	1-5,614-610;7-21,607-593	6-6,609-608[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	GAUAAUGGAGGGCAAGAUUGAA&UUCAA-AUUGUUUUUCAUUAUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6140_c1_g1_604_TPlot.pdf
TRINITY_DN6140_c1_g1:605	si_a72	TRINITY_DN6140_c1_g1	594	615	605	-21.90	-16.90	0.771689497716895	7.5	1-6,615-610;8-21,607-594	7-7,609-608[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	AUAAUGGAGGGCAAGAUUGAAG&UUUCAA-AUUGUUUUUCAUUAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN6140_c1_g1_605_TPlot.pdf
TRINITY_DN6141_c0_g1:4607	si_a498	TRINITY_DN6141_c0_g1	4597	4615	4607	-33.50	-21.80	0.650746268656716	8	1-4,4615-4612;8-15,4609-4602;17-21,4601-4597	5-7,4611-4610[AILq];16-16,x-x[BULq]	(((((-((((((((..-((((&))))...)))))))).)))))	CAAGG-AGACGAAGCA-GACA&UGUCGUUUUUCGUCUUCCUUG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6141_c0_g1_4607_TPlot.pdf
TRINITY_DN6141_c0_g1:5039	si_a184	TRINITY_DN6141_c0_g1	5023	5048	5039	-31.70	-21.00	0.662460567823344	9	1-7,5048-5042;9-14,5040-5035;15-21,5029-5023	8-8,5041-5041[SIL];x-x,5034-5030[BULt]	(((((((.....((((((.(((((((&))))))).))))))-----)))))))	GAGCGGGACGAAGAGAGAGAUUAUCU&AGAUAAUAUCUUUC-----CCUGUUC	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN6141_c0_g1_5039_TPlot.pdf
TRINITY_DN6141_c0_g1:5092	si_a646	TRINITY_DN6141_c0_g1	5081	5101	5092	-29.40	-19.26	0.655102040816327	15	4-8,5098-5094;13-20,5089-5082	1-3,5101-5099[UP5];9-12,5093-5090[SIL];21-21,5081-5081[UP3]	.((((((((....(((((...&...)))))....)))))))).	AUUCCCGAUUGGGUGCUCGUU&UUUGAGUAAUAUAUCGGGAAA	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN6141_c0_g1_5092_TPlot.pdf
TRINITY_DN6141_c0_g1:5164	si_a330	TRINITY_DN6141_c0_g1	5152	5174	5164	-30.50	-20.30	0.665573770491803	9.5	1-7,5174-5168;10-18,5164-5156;19-21,5154-5152	8-9,5167-5165[AILt];x-x,5155-5155[BULt]	(((.(((((((((...(((((((&)))))))-..)))))))))-)))	UCGAGGGCAAGGACUCAAAGAGA&UUUUUUU-AUUCCUUGUCC-CGA	3	0.999998291633412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN6141_c0_g1_5164_TPlot.pdf
TRINITY_DN6141_c0_g1:5477	si_s800	TRINITY_DN6141_c0_g1	5466	5486	5477	-29.70	-21.40	0.72053872053872	8	1-7,5486-5480;10-13,5477-5474;15-21,5472-5466	8-9,5479-5478[SIL];14-14,5473-5473[SIL]	(((((((.((((..(((((((&)))))))..)))).)))))))	AGGUAGCCGAGAGUAAGUGCG&CGUAUUUUAUCUUCGUUACCU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6141_c0_g1_5477_TPlot.pdf
TRINITY_DN6141_c0_g1:5478	si_s799	TRINITY_DN6141_c0_g1	5467	5487	5478	-30.00	-21.50	0.716666666666667	8	1-8,5487-5480;11-14,5477-5474;16-21,5472-5467	9-10,5479-5478[SIL];15-15,5473-5473[SIL]	((((((.((((..((((((((&))))))))..)))).))))))	GGUAGCCGAGAGUAAGUGCGA&UCGUAUUUUAUCUUCGUUACC	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN6141_c0_g1_5478_TPlot.pdf
TRINITY_DN6141_c0_g1:5704	si_s29	TRINITY_DN6141_c0_g1	5693	5713	5704	-26.40	-17.38	0.658333333333333	9.5	1-9,5713-5705;13-18,5701-5696	10-12,5704-5702[SIL];19-21,5695-5693[UP3]	...((((((...(((((((((&)))))))))...))))))...	AACAAGGAUCUUGUUGCAAUC&GAUUGCAACUAAAUCUUUAAU	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN6141_c0_g1_5704_TPlot.pdf
TRINITY_DN6141_c0_g1:5705	si_s28	TRINITY_DN6141_c0_g1	5694	5714	5705	-27.00	-18.18	0.673333333333333	7.5	1-10,5714-5705;14-19,5701-5696	11-13,5704-5702[SIL];20-21,5695-5694[UP3]	..((((((...((((((((((&))))))))))...))))))..	ACAAGGAUCUUGUUGCAAUCA&UGAUUGCAACUAAAUCUUUAA	2	0.778201065680735	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN6141_c0_g1_5705_TPlot.pdf
TRINITY_DN6141_c0_g1:5706	si_s27	TRINITY_DN6141_c0_g1	5695	5715	5706	-27.00	-18.28	0.677037037037037	6.5	2-11,5714-5705;15-20,5701-5696	1-1,5715-5715[UP5];12-14,5704-5702[SIL];21-21,5695-5695[UP3]	.((((((...((((((((((.&.))))))))))...)))))).	CAAGGAUCUUGUUGCAAUCAC&UUGAUUGCAACUAAAUCUUUA	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN6141_c0_g1_5706_TPlot.pdf
TRINITY_DN6141_c0_g1:5707	si_s26	TRINITY_DN6141_c0_g1	5696	5716	5707	-26.70	-18.08	0.677153558052434	6.5	3-12,5714-5705;16-21,5701-5696	1-2,5716-5715[UP5];13-15,5704-5702[SIL]	((((((...((((((((((..&..))))))))))...))))))	AAGGAUCUUGUUGCAAUCACC&AUUGAUUGCAACUAAAUCUUU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN6141_c0_g1_5707_TPlot.pdf
TRINITY_DN6142_c0_g1:2371	si_s151	TRINITY_DN6142_c0_g1	2358	2380	2371	-42.10	-28.28	0.671733966745843	7	2-10,2379-2371;12-17,2369-2364;20-21,2359-2358	1-1,2380-2380[UP5];11-11,2370-2370[SIL];18-19,2363-2360[AILt]	((....((((((.(((((((((.&.))))))))).))))))--..))	GGAAUGAUGAACGUCCUUUGGGG&ACCCAAAGGAGGUUCAU--GGCC	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s151_TRINITY_DN6142_c0_g1_2371_TPlot.pdf
TRINITY_DN6142_c0_g1:2375	si_s147	TRINITY_DN6142_c0_g1	2364	2384	2375	-33.10	-26.10	0.788519637462236	10	6-14,2379-2371;16-21,2369-2364	1-5,2384-2380[UP5];15-15,2370-2370[SIL]	((((((.(((((((((.....&.....))))))))).))))))	AUGAACGUCCUUUGGGGAGUA&AAAAACCCAAAGGAGGUUCAU	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s147_TRINITY_DN6142_c0_g1_2375_TPlot.pdf
TRINITY_DN6142_c0_g1:2376	si_s146	TRINITY_DN6142_c0_g1	2365	2385	2376	-34.60	-24.90	0.719653179190751	12	7-15,2379-2371;17-21,2369-2365	1-6,2385-2380[UP5];16-16,2370-2370[SIL]	(((((.(((((((((......&......))))))))).)))))	UGAACGUCCUUUGGGGAGUAC&CAAAAACCCAAAGGAGGUUCA	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s146_TRINITY_DN6142_c0_g1_2376_TPlot.pdf
TRINITY_DN6142_c0_g1:3467	si_a311	TRINITY_DN6142_c0_g1	3456	3476	3467	-32.70	-21.86	0.668501529051988	10.5	1-8,3476-3469;13-20,3464-3457	9-12,3468-3465[SIL];21-21,3456-3456[UP3]	.((((((((....((((((((&))))))))....)))))))).	UAUCGUGGAAACUUUCAAGCG&CGCUUGGAUUUAUCCAUGAUU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN6142_c0_g1_3467_TPlot.pdf
TRINITY_DN6142_c0_g1:3468	si_a310	TRINITY_DN6142_c0_g1	3457	3477	3468	-33.70	-22.06	0.65459940652819	9	1-9,3477-3469;14-21,3464-3457	10-13,3468-3465[SIL]	((((((((....(((((((((&)))))))))....))))))))	AUCGUGGAAACUUUCAAGCGG&UCGCUUGGAUUUAUCCAUGAU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN6142_c0_g1_3468_TPlot.pdf
TRINITY_DN6142_c0_g1:3826	si_a327	TRINITY_DN6142_c0_g1	3815	3835	3826	-28.40	-18.50	0.651408450704225	9.5	1-18,3835-3818	19-21,3817-3815[UP3]	...((((((((((((((((((&))))))))))))))))))...	CCGUAGGGGAUGGGAGGAUCA&UGAUUUUUUUAUUCCUUGUCC	2	0.999999463142234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN6142_c0_g1_3826_TPlot.pdf
TRINITY_DN6142_c0_g1:3827	si_a326	TRINITY_DN6142_c0_g1	3816	3836	3827	-26.20	-18.50	0.706106870229008	9.5	2-19,3835-3818	1-1,3836-3836[UP5];20-21,3817-3816[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CGUAGGGGAUGGGAGGAUCAA&AUGAUUUUUUUAUUCCUUGUC	3	0.999797023763102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN6142_c0_g1_3827_TPlot.pdf
TRINITY_DN6142_c0_g1:3828	si_a325	TRINITY_DN6142_c0_g1	3817	3837	3828	-25.90	-18.50	0.714285714285714	10.5	3-20,3835-3818	1-2,3837-3836[UP5];21-21,3817-3817[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUAGGGGAUGGGAGGAUCAAG&CAUGAUUUUUUUAUUCCUUGU	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN6142_c0_g1_3828_TPlot.pdf
TRINITY_DN6142_c0_g1:3829	si_a324	TRINITY_DN6142_c0_g1	3818	3838	3829	-27.50	-18.50	0.672727272727273	11	4-21,3835-3818	1-3,3838-3836[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAGGGGAUGGGAGGAUCAAGA&CCAUGAUUUUUUUAUUCCUUG	2	0.99560162837201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN6142_c0_g1_3829_TPlot.pdf
TRINITY_DN6142_c0_g1:4311	si_s284	TRINITY_DN6142_c0_g1	4300	4320	4311	-34.70	-22.90	0.659942363112392	10.5	4-9,4317-4312;11-20,4310-4301	1-3,4320-4318[UP5];10-10,4311-4311[SIL];21-21,4300-4300[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	ACAAUCGGCUGAGCGUGUCGG&AUAAUACGCCUAGUCGAUUGG	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s284_TRINITY_DN6142_c0_g1_4311_TPlot.pdf
TRINITY_DN6142_c0_g1:4312	si_s283	TRINITY_DN6142_c0_g1	4301	4321	4312	-34.00	-22.40	0.658823529411765	11.5	5-10,4317-4312;12-21,4310-4301	1-4,4321-4318[UP5];11-11,4311-4311[SIL]	((((((((((.((((((....&....)))))).))))))))))	CAAUCGGCUGAGCGUGUCGGA&CAUAAUACGCCUAGUCGAUUG	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s283_TRINITY_DN6142_c0_g1_4312_TPlot.pdf
TRINITY_DN6142_c0_g1:5147	si_a624	TRINITY_DN6142_c0_g1	5136	5156	5147	-32.30	-23.00	0.712074303405573	10.5	4-6,5153-5151;8-21,5149-5136	1-3,5156-5154[UP5];7-7,5150-5150[SIL]	((((((((((((((.(((...&...))).))))))))))))))	AGAUCGGCGUGAUGAGCCCGU&CUAGGCGUAUUAUGUCGAUUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN6142_c0_g1_5147_TPlot.pdf
TRINITY_DN6142_c0_g1:5148	si_a623	TRINITY_DN6142_c0_g1	5137	5157	5148	-33.10	-22.20	0.670694864048338	12.5	5-7,5153-5151;9-21,5149-5137	1-4,5157-5154[UP5];8-8,5150-5150[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GAUCGGCGUGAUGAGCCCGUU&ACUAGGCGUAUUAUGUCGAUU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN6142_c0_g1_5148_TPlot.pdf
TRINITY_DN61456_c0_g1:325	si_a463	TRINITY_DN61456_c0_g1	313	334	325	-19.70	-13.70	0.695431472081218	9.5	1-12,334-323;13-18,321-316	x-x,322-322[BULt];19-21,315-313[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UGUAUUGCAUUAUUGUGUGUGA&UUAUAUAUAAUA-UGUAAUUAU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN61456_c0_g1_325_TPlot.pdf
TRINITY_DN61456_c0_g1:327	si_a461	TRINITY_DN61456_c0_g1	315	336	327	-21.50	-15.00	0.697674418604651	8.5	2-14,335-323;15-20,321-316	1-1,336-336[UP5];x-x,322-322[BULt];21-21,315-315[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	UAUUGCAUUAUUGUGUGUGAUU&UGUUAUAUAUAAUA-UGUAAUU	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN61456_c0_g1_327_TPlot.pdf
TRINITY_DN61456_c0_g1:328	si_a460	TRINITY_DN61456_c0_g1	316	337	328	-21.60	-15.00	0.694444444444444	9.5	3-15,335-323;16-21,321-316	1-2,337-336[UP5];x-x,322-322[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AUUGCAUUAUUGUGUGUGAUUA&UUGUUAUAUAUAAUA-UGUAAU	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN61456_c0_g1_328_TPlot.pdf
TRINITY_DN61458_c0_g1:342	si_s74	TRINITY_DN61458_c0_g1	331	351	342	-25.00	-16.58	0.6632	8.5	1-4,351-348;8-20,344-332	5-7,347-345[SIL];21-21,331-331[UP3]	.(((((((((((((...((((&))))...))))))))))))).	AAAAGGAAGGAAAAUCCAUGG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN61458_c0_g1_342_TPlot.pdf
TRINITY_DN61459_c0_g1:103	si_a322	TRINITY_DN61459_c0_g1	92	113	103	-27.00	-18.80	0.696296296296296	10	2-6,112-108;9-21,104-92	1-1,113-113[UP5];7-8,107-105[AILt]	(((((((((((((...(((((.&.)))))-..)))))))))))))	AGGGGUGGAAAAAGAAGUGGAA&AUCCAU-GAUUUUUUUAUUCCU	0	0.14409199277264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN61459_c0_g1_103_TPlot.pdf
TRINITY_DN6145_c0_g1:1293	si_s485	TRINITY_DN6145_c0_g1	1282	1302	1293	-18.10	-13.60	0.751381215469613	7.5	1-2,1302-1301;4-19,1299-1284	3-3,1300-1300[SIL];20-21,1283-1282[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	UAUGUAUUUAAAUGAGUGGAG&CUAUAUUUAUUUAAAUAUAAA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN6145_c0_g1_1293_TPlot.pdf
TRINITY_DN6145_c0_g1:1731	si_s33	TRINITY_DN6145_c0_g1	1720	1740	1731	-24.10	-15.80	0.655601659751037	9.5	1-7,1740-1734;9-15,1732-1726	8-8,1733-1733[SIL];16-21,1725-1720[UP3]	......(((((((.(((((((&))))))).)))))))......	UGACUAUAGAGAUAUGGUUGC&GCAACUAAAUCUUUAAUAAUU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN6145_c0_g1_1731_TPlot.pdf
TRINITY_DN6146_c0_g1:1716	si_s89	TRINITY_DN6146_c0_g1	1701	1725	1716	-35.30	-25.10	0.711048158640227	9.5	1-3,1725-1723;6-18,1720-1708;19-21,1703-1701	4-5,1722-1721[SIL];x-x,1707-1704[BULt]	(((....(((((((((((((..(((&)))..)))))))))))))----)))	CGAAGAAAGUGAAGAAGAAGUUGGG&CCUUUCUUCUUCUUCGCU----UCG	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6146_c0_g1_1716_TPlot.pdf
TRINITY_DN6147_c0_g1:414	si_s697	TRINITY_DN6147_c0_g1	403	423	414	-26.90	-17.80	0.661710037174721	11	5-13,419-411;15-20,409-404	1-4,423-420[UP5];14-14,410-410[SIL];21-21,403-403[UP3]	.((((((.(((((((((....&....))))))))).)))))).	ACGCUGAGAAGUCGACUCAGG&AAUUAGUCGAUUUAUUAGUGA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN6147_c0_g1_414_TPlot.pdf
TRINITY_DN6147_c0_g1:881	si_a506	TRINITY_DN6147_c0_g1	870	890	881	-33.40	-22.00	0.658682634730539	9	3-12,888-879;14-15,877-876;17-19,874-872	1-2,890-889[UP5];13-13,878-878[SIL];16-16,875-875[SIL];20-21,871-870[UP3]	..(((.((.((((((((((..&..)))))))))).)).)))..	GGACAGUCGGAGGAGGACGCC&UUCGUCUUCCUUGGAAUGUAA	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN6147_c0_g1_881_TPlot.pdf
TRINITY_DN6148_c0_g1:3150	si_a70	TRINITY_DN6148_c0_g1	3139	3159	3150	-23.90	-17.60	0.736401673640168	8	1-3,3159-3157;5-11,3155-3149;13-21,3147-3139	4-4,3156-3156[SIL];12-12,3148-3148[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	GAUGAGGAAGGAUUUGAUGGG&UCUUUCAAAUUGUUUUUCAUU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6148_c0_g1_3150_TPlot.pdf
TRINITY_DN6148_c0_g1:476	si_s78	TRINITY_DN6148_c0_g1	465	490	476	-26.20	-17.32	0.661068702290076	16.5	1-9,490-482;11-20,475-466	10-10,481-476[AILt];21-21,465-465[UP3]	.((((((((((......(((((((((&)))))))))-----.)))))))))).	UGGAGGAGGGACCUUUCAGAAGAGAA&UUUUUUUCU-----UUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6148_c0_g1_476_TPlot.pdf
TRINITY_DN6148_c0_g1:483	si_s76	TRINITY_DN6148_c0_g1	467	492	483	-23.60	-16.82	0.71271186440678	15.5	1-11,492-482;13-21,475-467	12-12,481-476[AILt]	(((((((((......(((((((((((&)))))))))))-----.)))))))))	GAGGAGGGACCUUUCAGAAGAGAAAU&AUUUUUUUUCU-----UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6148_c0_g1_483_TPlot.pdf
TRINITY_DN6148_c0_g1:485	si_s74	TRINITY_DN6148_c0_g1	469	494	485	-25.00	-17.72	0.7088	10	1-13,494-482;15-21,475-469	14-14,481-476[AILt]	(((((((......(((((((((((((&)))))))))))))-----.)))))))	GGAGGGACCUUUCAGAAGAGAAAUGG&CUAUUUUUUUUCU-----UUCCUUUC	2	0.999999981818934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6148_c0_g1_485_TPlot.pdf
TRINITY_DN6148_c0_g1:487	si_s72	TRINITY_DN6148_c0_g1	470	496	487	-24.10	-16.10	0.66804979253112	13	3-15,494-482;16-21,475-470	1-2,496-495[UP5];x-x,481-476[BULt]	((((((......(((((((((((((..&..)))))))))))))------))))))	GAGGGACCUUUCAGAAGAGAAAUGGUA&UUCUAUUUUUUUUCU------UUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6148_c0_g1_487_TPlot.pdf
TRINITY_DN61493_c0_g1:477	si_a239	TRINITY_DN61493_c0_g1	466	485	477	-35.40	-25.10	0.709039548022599	5.5	2-6,484-480;8-10,479-477;12-21,475-466	1-1,485-485[UP5];7-7,x-x[BULq];11-11,476-476[SIL]	((((((((((.(((-(((((.&.))))).))).))))))))))	AUUGGGGGAUGGAA-UGAUUC&UAAUCAAUUCGAUCCCCCGAU	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a239_TRINITY_DN61493_c0_g1_477_TPlot.pdf
TRINITY_DN6149_c0_g1:2562	si_a356	TRINITY_DN6149_c0_g1	2552	2571	2562	-26.90	-17.80	0.661710037174721	10	5-12,2567-2560;14-21,2559-2552	1-4,2571-2568[UP5];13-13,x-x[BULq]	((((((((-((((((((....&....)))))))).))))))))	AUCCGAUC-AAAUAGGGGCGU&UUAAUUCUAUUUUGAUCGGAU	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN6149_c0_g1_2562_TPlot.pdf
TRINITY_DN614_c0_g1:2404	si_s74	TRINITY_DN614_c0_g1	2393	2415	2404	-25.00	-16.70	0.668	10	1-8,2415-2408;9-17,2405-2397	x-x,2407-2406[BULt];18-21,2396-2393[UP3]	....(((((((((..((((((((&))))))))--)))))))))....	GCCUGGAAAGAAAGUGAAAAUGG&CUAUUUUU--UUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN614_c0_g1_2404_TPlot.pdf
TRINITY_DN614_c0_g1:2408	si_s72	TRINITY_DN614_c0_g1	2395	2417	2408	-24.10	-16.90	0.701244813278008	10	2-10,2416-2408;11-19,2405-2397	1-1,2417-2417[UP5];x-x,2407-2406[BULt];20-21,2396-2395[UP3]	..(((((((((..(((((((((.&.)))))))))--)))))))))..	CUGGAAAGAAAGUGAAAAUGGGU&UUCUAUUUUU--UUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN614_c0_g1_2408_TPlot.pdf
TRINITY_DN614_c0_g1:2444	si_a595	TRINITY_DN614_c0_g1	2432	2453	2444	-30.30	-19.90	0.656765676567657	9	3-14,2451-2440;15-17,2438-2436	1-2,2453-2452[UP5];x-x,2439-2439[BULt];18-21,2435-2432[UP3]	....(((.((((((((((((..&..))))))))))))-)))....	UGUAGCGCAAAAUUUUGUCCAU&AAGGACAGAAUUUU-CGCAAUU	2	0.959688012547525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN614_c0_g1_2444_TPlot.pdf
TRINITY_DN61514_c0_g1:201	si_s76	TRINITY_DN61514_c0_g1	189	210	201	-23.60	-16.10	0.682203389830509	14.5	7-10,204-201;11-21,199-189	1-6,210-205[UP5];x-x,200-200[BULt]	(((((((((((.((((......&......))))-)))))))))))	GAGAAAGGAGACGAAAUCCUGC&AUUUUUUUUC-UUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN61514_c0_g1_201_TPlot.pdf
TRINITY_DN6151_c0_g1:1103	si_a785	TRINITY_DN6151_c0_g1	1085	1112	1103	-25.90	-18.80	0.725868725868726	19.5	1-10,1112-1103;11-21,1095-1085	x-x,1102-1096[BULt]	(((((((((((.......((((((((((&))))))))))-------)))))))))))	GAGGAUGGAGGCAGAGAUAAUGGAGGAG&CUCUUCUAUU-------UUUCUAUUUUC	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6151_c0_g1_1103_TPlot.pdf
TRINITY_DN6152_c0_g1:1391	si_s384	TRINITY_DN6152_c0_g1	1382	1400	1391	-38.50	-27.00	0.701298701298701	5.5	1-12,1400-1389;14-14,1388-1388;16-20,1387-1383	13-13,x-x[BULq];15-15,x-x[BULq];21-21,1382-1382[UP3]	.(((((-(-((((((((((((&)))))))))))).).))))).	CUGGGA-G-AAGGUGGACGCG&CGUGUCCGCCUUACAUUCCAA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN6152_c0_g1_1391_TPlot.pdf
TRINITY_DN6152_c0_g1:1505	si_s64	TRINITY_DN6152_c0_g1	1494	1515	1505	-24.10	-15.80	0.655601659751037	9	2-8,1514-1508;9-14,1506-1501;17-21,1498-1494	1-1,1515-1515[UP5];x-x,1507-1507[BULt];15-16,1500-1499[SIL]	(((((..((((((.(((((((.&.)))))))-))))))..)))))	GGAGAUUGUGGGAUGUUGCUAU&UUAGCAAC-UUCUAUUUUUUUU	4	0.999999999999852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6152_c0_g1_1505_TPlot.pdf
TRINITY_DN6152_c0_g1:2438	si_a635	TRINITY_DN6152_c0_g1	2427	2447	2438	-26.10	-17.20	0.659003831417624	8.5	1-15,2447-2433;17-18,2431-2430	16-16,2432-2432[SIL];19-21,2429-2427[UP3]	...((.(((((((((((((((&))))))))))))))).))...	GUAACACGAAAGGGUCGGCAU&AUGUCGAUUUUUUUGAGUAAU	4	0.999999999997783	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN6152_c0_g1_2438_TPlot.pdf
TRINITY_DN61539_c0_g1:389	si_s67	TRINITY_DN61539_c0_g1	378	399	389	-25.60	-17.30	0.67578125	5.5	2-6,398-394;7-10,392-389;12-21,387-378	1-1,399-399[UP5];x-x,393-393[BULt];11-11,388-388[SIL]	((((((((((.((((.(((((.&.)))))-)))).))))))))))	AAGAAGAAAAUUAGAGAGUUGA&GCAACU-UCUAUUUUUUUUCUU	4	0.99999999906161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN61539_c0_g1_389_TPlot.pdf
TRINITY_DN6153_c0_g1:596	si_a140	TRINITY_DN6153_c0_g1	586	605	596	-25.20	-17.30	0.686507936507937	5	1-13,605-593;15-18,592-589	14-14,x-x[BULq];19-21,588-586[UP3]	...((((-(((((((((((((&))))))))))))).))))...	ACUACAA-AACGAUUGAUUAC&GUAAUUAAUCGUUGUUGUUUU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN6153_c0_g1_596_TPlot.pdf
TRINITY_DN6153_c0_g1:597	si_a139	TRINITY_DN6153_c0_g1	587	606	597	-25.90	-17.30	0.667953667953668	5	2-14,605-593;16-19,592-589	1-1,606-606[UP5];15-15,x-x[BULq];20-21,588-587[UP3]	..((((-(((((((((((((.&.))))))))))))).))))..	CUACAA-AACGAUUGAUUACG&AGUAAUUAAUCGUUGUUGUUU	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN6153_c0_g1_597_TPlot.pdf
TRINITY_DN6153_c0_g1:598	si_a138	TRINITY_DN6153_c0_g1	588	607	598	-26.30	-17.30	0.657794676806084	6	3-15,605-593;17-20,592-589	1-2,607-606[UP5];16-16,x-x[BULq];21-21,588-588[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	UACAA-AACGAUUGAUUACGA&UAGUAAUUAAUCGUUGUUGUU	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN6153_c0_g1_598_TPlot.pdf
TRINITY_DN6153_c0_g1:599	si_a137	TRINITY_DN6153_c0_g1	589	608	599	-26.50	-17.30	0.652830188679245	7	4-16,605-593;18-21,592-589	1-3,608-606[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	ACAA-AACGAUUGAUUACGAU&AUAGUAAUUAAUCGUUGUUGU	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN6153_c0_g1_599_TPlot.pdf
TRINITY_DN6154_c0_g1:1780	si_s797	TRINITY_DN6154_c0_g1	1769	1790	1780	-30.00	-20.10	0.67	10	1-3,1790-1788;4-7,1786-1783;9-11,1781-1779;13-21,1777-1769	x-x,1787-1787[BULt];8-8,1782-1782[SIL];12-12,1778-1778[SIL]	(((((((((.(((.((((.(((&)))-)))).))).)))))))))	UAGCGAGGAAGAGUUGCGCAGC&GCU-CGUAUUUUAUCUUCGUUA	3	0.999998713244869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN6154_c0_g1_1780_TPlot.pdf
TRINITY_DN6154_c0_g1:1895	si_a149	TRINITY_DN6154_c0_g1	1884	1905	1895	-29.40	-19.20	0.653061224489796	9	1-3,1905-1903;4-12,1901-1893;14-18,1891-1887	x-x,1902-1902[BULt];13-13,1892-1892[SIL];19-21,1886-1884[UP3]	...(((((.(((((((((.(((&)))-))))))))).)))))...	AGCGACCUGAAGGCGACAGACG&CGU-UGUUGUUUUAAGGUCAAU	3	0.999999999236329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN6154_c0_g1_1895_TPlot.pdf
TRINITY_DN6154_c0_g1:1989	si_s894	TRINITY_DN6154_c0_g1	1978	1999	1989	-29.10	-19.10	0.656357388316151	11	3-5,1997-1995;6-17,1993-1982	1-2,1999-1998[UP5];x-x,1994-1994[BULt];18-21,1981-1978[UP3]	....((((((((((((.(((..&..)))-))))))))))))....	CCCAUGGGGAGGAAGCACUACG&AAUAG-GCUUUCUCUUCAAUUU	4	0.999999999792055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6154_c0_g1_1989_TPlot.pdf
TRINITY_DN6154_c0_g1:1990	si_s893	TRINITY_DN6154_c0_g1	1979	2000	1990	-29.10	-19.10	0.656357388316151	12	4-6,1997-1995;7-18,1993-1982	1-3,2000-1998[UP5];x-x,1994-1994[BULt];19-21,1981-1979[UP3]	...((((((((((((.(((...&...)))-))))))))))))...	CCAUGGGGAGGAAGCACUACGA&AAAUAG-GCUUUCUCUUCAAUU	2	0.999991597100676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN6154_c0_g1_1990_TPlot.pdf
TRINITY_DN6154_c0_g1:2080	si_s90	TRINITY_DN6154_c0_g1	2069	2097	2080	-35.30	-24.80	0.702549575070822	21.5	1-7,2097-2091;8-20,2082-2070	x-x,2090-2083[BULt];21-21,2069-2069[UP3]	.(((((((((((((........(((((((&)))))))--------))))))))))))).	GCGAAGCGGGGAAGCGUCUCCUGAGAGGG&CUUUCUU--------CUUCUUCGCUUCGG	2	0.999725898499617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6154_c0_g1_2080_TPlot.pdf
TRINITY_DN6154_c0_g1:2081	si_s89	TRINITY_DN6154_c0_g1	2070	2100	2081	-35.30	-26.40	0.747875354107649	24	1-8,2100-2093;9-21,2082-2070	x-x,2092-2083[BULt]	(((((((((((((..........((((((((&))))))))----------)))))))))))))	CGAAGCGGGGAAGCGUCUCCUGAGAGGGAGG&CCUUUCUU----------CUUCUUCGCUUCG	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6154_c0_g1_2081_TPlot.pdf
TRINITY_DN6154_c0_g1:2082	si_s88	TRINITY_DN6154_c0_g1	2071	2101	2082	-34.80	-24.00	0.689655172413793	25	2-9,2100-2093;10-21,2082-2071	1-1,2101-2101[UP5];x-x,2092-2083[BULt]	((((((((((((..........((((((((.&.))))))))----------))))))))))))	GAAGCGGGGAAGCGUCUCCUGAGAGGGAGGU&UCCUUUCUU----------CUUCUUCGCUUC	3	0.99999999940103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6154_c0_g1_2082_TPlot.pdf
TRINITY_DN6154_c0_g1:2083	si_s87	TRINITY_DN6154_c0_g1	2072	2098	2083	-32.90	-22.24	0.675987841945289	19	1-8,2098-2091;11-21,2082-2072	9-10,2090-2083[AILt]	(((((((((((........((((((((&))))))))------..)))))))))))	AAGCGGGGAAGCGUCUCCUGAGAGGGA&UUCCUUUC------UUCUUCUUCGCUU	2	0.999999999986843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6154_c0_g1_2083_TPlot.pdf
TRINITY_DN6154_c0_g1:2084	si_s86	TRINITY_DN6154_c0_g1	2073	2099	2084	-32.90	-21.74	0.660790273556231	19.5	1-9,2099-2091;12-21,2082-2073	10-11,2090-2083[AILt]	((((((((((........(((((((((&)))))))))------..))))))))))	AGCGGGGAAGCGUCUCCUGAGAGGGAG&UUUCCUUUC------UUCUUCUUCGCU	2	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6154_c0_g1_2084_TPlot.pdf
TRINITY_DN6154_c0_g1:2091	si_s85	TRINITY_DN6154_c0_g1	2074	2100	2091	-33.80	-23.14	0.684615384615385	20	1-10,2100-2091;13-21,2082-2074	11-12,2090-2083[AILt]	(((((((((........((((((((((&))))))))))------..)))))))))	GCGGGGAAGCGUCUCCUGAGAGGGAGG&CUUUCCUUUC------UUCUUCUUCGC	3	0.999999999988898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6154_c0_g1_2091_TPlot.pdf
TRINITY_DN6155_c0_g1:1295	si_s768	TRINITY_DN6155_c0_g1	1281	1304	1295	-26.80	-18.74	0.699253731343284	10	3-14,1302-1291;16-21,1286-1281	1-2,1304-1303[UP5];15-15,1290-1287[AILt]	((((((....((((((((((((..&..))))))))))))---.))))))	UGGCAAAUACGGUAGUUGAUCGGU&AACGAUUAAUUACU---AUUGCUA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN6155_c0_g1_1295_TPlot.pdf
TRINITY_DN6155_c0_g2:692	si_s73	TRINITY_DN6155_c0_g2	681	701	692	-24.00	-15.80	0.658333333333333	8.5	2-8,700-694;10-18,692-684	1-1,701-701[UP5];9-9,693-693[SIL];19-21,683-681[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GAUGGGAAGAGGUAAAAUAGC&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6155_c0_g2_692_TPlot.pdf
TRINITY_DN6156_c0_g1:148	si_s72	TRINITY_DN6156_c0_g1	137	157	148	-24.10	-16.70	0.692946058091286	10	3-5,155-153;7-19,151-139	1-2,157-156[UP5];6-6,152-152[SIL];20-21,138-137[UP3]	..(((((((((((((.(((..&..))).)))))))))))))..	ACGGAGGGAAGAAAAUUGGUC&UUCUAUUUUUUUUCUUUCCUU	2	0.999999999999913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6156_c0_g1_148_TPlot.pdf
TRINITY_DN6157_c0_g1:336	si_s47	TRINITY_DN6157_c0_g1	325	345	336	-26.30	-17.60	0.669201520912548	4	1-4,345-342;6-13,340-333;16-21,330-325	5-5,341-341[SIL];14-15,332-331[SIL]	((((((..((((((((.((((&)))).))))))))..))))))	CUAACUGAAAAUCCAAAUAUU&AAUAAUUGGAUUUCAAGUUAG	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN6157_c0_g1_336_TPlot.pdf
TRINITY_DN6157_c0_g1:777	si_a329	TRINITY_DN6157_c0_g1	767	786	777	-29.60	-20.20	0.682432432432432	14	8-14,779-773;16-21,772-767	1-7,786-780[UP5];15-15,x-x[BULq]	((((((-(((((((.......&.......))))))).))))))	CGGGAC-AGGAAUACGUGGAU&AUUUUUUUAUUCCUUGUCCCG	4	0.999982273507496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN6157_c0_g1_777_TPlot.pdf
TRINITY_DN6158_c0_g1:265	si_a406	TRINITY_DN6158_c0_g1	254	274	265	-19.80	-13.50	0.681818181818182	11.5	2-15,273-260	1-1,274-274[UP5];16-21,259-254[UP3]	......((((((((((((((.&.))))))))))))))......	UUAUCCUGUAAGCGAGGCAAA&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999935283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6158_c0_g1_265_TPlot.pdf
TRINITY_DN6158_c0_g1:87	si_s117	TRINITY_DN6158_c0_g1	70	96	87	-24.70	-17.90	0.724696356275304	15	2-10,95-87;11-20,80-71	1-1,96-96[UP5];x-x,86-81[BULt];21-21,70-70[UP3]	.((((((((((......(((((((((.&.)))))))))------)))))))))).	CACUCUUCUAUUUCUGCUUUUCUGUUC&AAAUAGAAAA------AUAGAAGAGUU	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN6158_c0_g1_87_TPlot.pdf
TRINITY_DN61598_c0_g1:82	si_a137	TRINITY_DN61598_c0_g1	71	93	82	-26.50	-18.68	0.704905660377358	12	1-4,93-90;7-21,85-71	5-6,89-86[AILt]	(((((((((((((((....((((&))))--..)))))))))))))))	ACGGCGGCGAUUGAUAGUUCUGU&AUAG--UAAUUAAUCGUUGUUGU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN61598_c0_g1_82_TPlot.pdf
TRINITY_DN6159_c0_g1:1217	si_a70	TRINITY_DN6159_c0_g1	1208	1226	1217	-23.90	-15.90	0.665271966527197	6	1-14,1226-1213;18-21,1211-1208	15-17,1212-1212[AILq]	((((.--((((((((((((((&))))))))))))))...))))	AGUGU--AGCAGUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999999611562096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6159_c0_g1_1217_TPlot.pdf
TRINITY_DN6159_c0_g1:227	si_a355	TRINITY_DN6159_c0_g1	216	235	227	-26.80	-18.50	0.690298507462687	7.5	2-9,234-227;11-21,226-216	1-1,235-235[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	UUCGAUCAAGG-AGAGUUGAC&AUUAAUUCUAUUUUGAUCGGA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN6159_c0_g1_227_TPlot.pdf
TRINITY_DN6159_c0_g1:774	si_s457	TRINITY_DN6159_c0_g1	763	783	774	-30.00	-19.70	0.656666666666667	9	2-3,782-781;5-9,779-775;11-20,773-764	1-1,783-783[UP5];4-4,780-780[SIL];10-10,774-774[SIL];21-21,763-763[UP3]	.((((((((((.(((((.((.&.)).))))).)))))))))).	AGGAUAUGAGGGGGUUGGUGA&ACAACAAUUAUCUCAUAUCCA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN6159_c0_g1_774_TPlot.pdf
TRINITY_DN6159_c0_g1:775	si_s456	TRINITY_DN6159_c0_g1	764	784	775	-29.30	-19.20	0.655290102389078	10	3-4,782-781;6-10,779-775;12-21,773-764	1-2,784-783[UP5];5-5,780-780[SIL];11-11,774-774[SIL]	((((((((((.(((((.((..&..)).))))).))))))))))	GGAUAUGAGGGGGUUGGUGAC&AACAACAAUUAUCUCAUAUCC	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s456_TRINITY_DN6159_c0_g1_775_TPlot.pdf
TRINITY_DN6159_c0_g1:781	si_s57	TRINITY_DN6159_c0_g1	770	791	781	-29.30	-19.30	0.658703071672355	8.5	1-5,791-787;6-10,785-781;12-19,779-772	x-x,786-786[BULt];11-11,780-780[SIL];20-21,771-770[UP3]	..((((((((.(((((.(((((&)))))-))))).))))))))..	GAGGGGGUUGGUGACUGUGAAA&UUUCA-AGUUAGCAACUUCUAU	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN6159_c0_g1_781_TPlot.pdf
TRINITY_DN6159_c0_g1:820	si_a70	TRINITY_DN6159_c0_g1	811	829	820	-23.90	-15.90	0.665271966527197	6	1-14,829-816;18-21,814-811	15-17,815-815[AILq]	((((.--((((((((((((((&))))))))))))))...))))	AGUGU--AGCAGUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999999735906632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6159_c0_g1_820_TPlot.pdf
TRINITY_DN61601_c0_g1:271	si_a66	TRINITY_DN61601_c0_g1	261	280	271	-26.70	-19.60	0.734082397003745	6.5	1-10,280-271;13-20,269-262	11-12,270-270[AILq];21-21,261-261[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	CAAAACGAUC-GAAGGAAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN61601_c0_g1_271_TPlot.pdf
TRINITY_DN61601_c0_g1:352	si_s7	TRINITY_DN61601_c0_g1	341	361	352	-21.70	-15.00	0.691244239631336	4.5	1-15,361-347;17-19,345-343	16-16,346-346[SIL];20-21,342-341[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AAGUAAUAAUAAUAAGUAGUA&UAUUACUUAUUAUUACUAUAU	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN61601_c0_g1_352_TPlot.pdf
TRINITY_DN61601_c0_g1:353	si_s6	TRINITY_DN61601_c0_g1	342	362	353	-21.70	-16.00	0.737327188940092	3.5	1-16,362-347;18-20,345-343	17-17,346-346[SIL];21-21,342-342[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AGUAAUAAUAAUAAGUAGUAU&AUAUUACUUAUUAUUACUAUA	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN61601_c0_g1_353_TPlot.pdf
TRINITY_DN61629_c0_g1:1186	si_s493	TRINITY_DN61629_c0_g1	1175	1195	1186	-19.80	-13.38	0.675757575757576	8	1-7,1195-1189;11-21,1185-1175	8-10,1188-1186[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	UUGUUUUGUUUCAUUUUGAGU&AUUUAAAUAUAAACAAAACAA	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN61629_c0_g1_1186_TPlot.pdf
TRINITY_DN61629_c0_g1:1187	si_s492	TRINITY_DN61629_c0_g1	1176	1196	1187	-20.10	-13.58	0.675621890547264	8	1-8,1196-1189;12-21,1185-1176	9-11,1188-1186[SIL]	((((((((((...((((((((&))))))))...))))))))))	UGUUUUGUUUCAUUUUGAGUA&UAUUUAAAUAUAAACAAAACA	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN61629_c0_g1_1187_TPlot.pdf
TRINITY_DN6164_c0_g1:184	si_a503	TRINITY_DN6164_c0_g1	173	192	184	-32.10	-22.90	0.713395638629283	7	1-6,192-187;8-18,186-176	7-7,x-x[BULq];19-21,175-173[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	UACUCCAAGGAAGA-GAGAGA&UUUUUCGUCUUCCUUGGAAUG	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN6164_c0_g1_184_TPlot.pdf
TRINITY_DN6165_c2_g1:219	si_a274	TRINITY_DN6165_c2_g1	208	229	219	-36.10	-23.62	0.654293628808864	12.5	2-8,228-222;12-20,217-209	1-1,229-229[UP5];9-11,221-218[AILt];21-21,208-208[UP3]	.(((((((((....(((((((.&.)))))))-...))))))))).	UGGUGGUCUUCCGGGUGGGCGG&ACGCCUAC-GAAAAGAUCGCUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a274_TRINITY_DN6165_c2_g1_219_TPlot.pdf
TRINITY_DN6166_c1_g1:593	si_s76	TRINITY_DN6166_c1_g1	582	602	593	-23.60	-17.00	0.720338983050847	8.5	4-17,599-586;19-20,584-583	1-3,602-600[UP5];18-18,585-585[SIL];21-21,582-582[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	UAGUGAGGAAAGAAAAAGUAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6166_c1_g1_593_TPlot.pdf
TRINITY_DN6166_c1_g1:594	si_s75	TRINITY_DN6166_c1_g1	583	603	594	-24.00	-17.00	0.708333333333333	9.5	5-18,599-586;20-21,584-583	1-4,603-600[UP5];19-19,585-585[SIL]	((.((((((((((((((....&....)))))))))))))).))	AGUGAGGAAAGAAAAAGUAAA&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999999938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6166_c1_g1_594_TPlot.pdf
TRINITY_DN61698_c0_g1:12	si_s74	TRINITY_DN61698_c0_g1	1	21	12	-25.00	-16.70	0.668	16.5	9-21,13-1	1-8,21-14[UP5]	(((((((((((((........&........)))))))))))))	GAAAGGAGAGAAGUUUAGCAC&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN61698_c0_g1_12_TPlot.pdf
TRINITY_DN61698_c0_g1:1247	si_a350	TRINITY_DN61698_c0_g1	1236	1256	1247	-20.30	-15.40	0.758620689655172	11	5-20,1252-1237	1-4,1256-1253[UP5];21-21,1236-1236[UP3]	.((((((((((((((((....&....)))))))))))))))).	ACGAAAUGGGAUUAGUAACUG&AAAAUAUUAAUUCUAUUUUGA	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN61698_c0_g1_1247_TPlot.pdf
TRINITY_DN616_c0_g1:308	si_s69	TRINITY_DN616_c0_g1	297	316	308	-23.40	-17.20	0.735042735042735	7	3-7,314-310;9-21,309-297	1-2,316-315[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAAGAAAAAAGA-AGAGGAA&AACUUCUAUUUUUUUUCUUUC	3	0.999999999722466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN616_c0_g1_308_TPlot.pdf
TRINITY_DN616_c0_g1:925	si_s899	TRINITY_DN616_c0_g1	914	934	925	-28.30	-19.00	0.671378091872792	8.5	2-8,933-927;11-19,924-916	1-1,934-934[UP5];9-10,926-925[SIL];20-21,915-914[UP3]	..(((((((((..(((((((.&.)))))))..)))))))))..	GUUUGAAGUUGUCGAGAAGGG&GCUUUCUCUUCAAUUUCAAUU	3	0.999999914612344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN616_c0_g1_925_TPlot.pdf
TRINITY_DN616_c0_g1:926	si_s898	TRINITY_DN616_c0_g1	915	936	926	-30.70	-21.50	0.700325732899023	8.5	1-4,936-933;5-9,931-927;12-20,924-916	x-x,932-932[BULt];10-11,926-925[SIL];21-21,915-915[UP3]	.(((((((((..(((((.((((&))))-)))))..))))))))).	UUUGAAGUUGUCGAGAAGGGCC&GGCU-UUCUCUUCAAUUUCAAU	2	0.987331012997792	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN616_c0_g1_926_TPlot.pdf
TRINITY_DN616_c0_g1:927	si_s897	TRINITY_DN616_c0_g1	916	937	927	-31.30	-22.50	0.718849840255591	7.5	1-5,937-933;6-10,931-927;13-21,924-916	x-x,932-932[BULt];11-12,926-925[SIL]	(((((((((..(((((.(((((&)))))-)))))..)))))))))	UUGAAGUUGUCGAGAAGGGCCU&AGGCU-UUCUCUUCAAUUUCAA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN616_c0_g1_927_TPlot.pdf
TRINITY_DN616_c0_g1:928	si_s896	TRINITY_DN616_c0_g1	917	938	928	-31.60	-21.60	0.683544303797468	7.5	2-6,937-933;7-11,931-927;14-21,924-917	1-1,938-938[UP5];x-x,932-932[BULt];12-13,926-925[SIL]	((((((((..(((((.(((((.&.)))))-)))))..))))))))	UGAAGUUGUCGAGAAGGGCCUU&UAGGCU-UUCUCUUCAAUUUCA	3	0.999227846208043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN616_c0_g1_928_TPlot.pdf
TRINITY_DN6170_c0_g1:36	si_s40	TRINITY_DN6170_c0_g1	24	45	36	-24.30	-16.00	0.65843621399177	6.5	1-4,45-42;7-18,39-28;19-21,26-24	5-6,41-40[SIL];x-x,27-27[BULt]	(((.((((((((((((..((((&))))..))))))))))))-)))	GAACAUCCGAUUAUUGUUGAUU&AAUCUUUAAUAAUUGGAU-UUC	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN6170_c0_g1_36_TPlot.pdf
TRINITY_DN6170_c0_g1:37	si_s39	TRINITY_DN6170_c0_g1	26	46	37	-22.30	-15.60	0.699551569506726	7.5	1-5,46-42;8-19,39-28	6-7,41-40[SIL];20-21,27-26[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	ACAUCCGAUUAUUGUUGAUUU&AAAUCUUUAAUAAUUGGAUUU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN6170_c0_g1_37_TPlot.pdf
TRINITY_DN6171_c0_g2:1340	si_a848	TRINITY_DN6171_c0_g2	1328	1349	1340	-31.30	-20.92	0.668370607028754	8	2-13,1348-1337;17-19,1332-1330	1-1,1349-1349[UP5];14-16,1336-1333[AILt];20-21,1329-1328[UP3]	..(((....((((((((((((.&.))))))))))))-...)))..	CCGGAAAACCAAGUUGGCAACA&AGUUGCUAACUUG-AAAUCCAA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN6171_c0_g2_1340_TPlot.pdf
TRINITY_DN61724_c0_g1:95	si_s841	TRINITY_DN61724_c0_g1	84	104	95	-34.00	-24.60	0.723529411764706	8	3-6,102-99;8-21,97-84	1-2,104-103[UP5];7-7,98-98[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GUUGGCUCGUUUCUGUCAGCA&AUUUGAAAGAAGCGAGUCGAC	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s841_TRINITY_DN61724_c0_g1_95_TPlot.pdf
TRINITY_DN6173_c2_g1:395	si_a67	TRINITY_DN6173_c2_g1	385	403	395	-27.20	-19.78	0.727205882352941	9	1-9,403-395;14-21,392-385	10-13,394-393[AILq]	((((((((..--(((((((((&)))))))))....))))))))	GGAAGACACG--GAAAGGAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN6173_c2_g1_395_TPlot.pdf
TRINITY_DN61746_c0_g1:134	si_s630	TRINITY_DN61746_c0_g1	122	145	134	-35.60	-24.90	0.699438202247191	9	1-9,145-137;11-14,133-130;15-21,128-122	10-10,136-134[AILt];x-x,129-129[BULt]	(((((((.((((...(((((((((&)))))))))--.))))-)))))))	GCAAACGACCUAAAAGAGAAGGUC&GAUCUUUUC--GUAGG-CGUUUGC	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN61746_c0_g1_134_TPlot.pdf
TRINITY_DN6174_c0_g1:1901	si_a658	TRINITY_DN6174_c0_g1	1890	1914	1901	-33.40	-21.90	0.655688622754491	13.5	2-7,1913-1908;8-19,1903-1892	1-1,1914-1914[UP5];x-x,1907-1904[BULt];20-21,1891-1890[UP3]	..((((((((((((....((((((.&.))))))----))))))))))))..	UUUUAGUGGGUAUUGGAAUCCCGAG&AUCGGGA----AAUGCCUAUUGAUU	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN6174_c0_g1_1901_TPlot.pdf
TRINITY_DN61756_c0_g1:935	si_s84	TRINITY_DN61756_c0_g1	922	944	935	-32.30	-23.30	0.721362229102167	5.5	1-3,944-942;5-14,940-931;16-21,927-922	4-4,941-941[SIL];15-15,930-928[AILt]	((((((...((((((((((.(((&))).))))))))))--.))))))	CGAGGAUCUGAAGAAAGGAUAGA&UCUUUCCUUUCUUC--UUCUUCG	3	0.999999849489981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN61756_c0_g1_935_TPlot.pdf
TRINITY_DN61756_c0_g1:938	si_s81	TRINITY_DN61756_c0_g1	924	947	938	-28.90	-19.40	0.671280276816609	8	1-6,947-942;8-17,940-931;18-21,927-924	7-7,941-941[SIL];x-x,930-928[BULt]	((((...((((((((((.((((((&)))))).))))))))))---))))	AGGAUCUGAAGAAAGGAUAGAGGG&UUUUCUUUCCUUUCUUC---UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN61756_c0_g1_938_TPlot.pdf
TRINITY_DN61756_c0_g1:940	si_s79	TRINITY_DN61756_c0_g1	929	949	940	-26.20	-19.30	0.736641221374046	10	3-8,947-942;10-19,940-931	1-2,949-948[UP5];9-9,941-941[SIL];20-21,930-929[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	CUGAAGAAAGGAUAGAGGGCC&UUUUUUCUUUCCUUUCUUCUU	2	0.999999998634417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN61756_c0_g1_940_TPlot.pdf
TRINITY_DN61756_c0_g1:942	si_s77	TRINITY_DN61756_c0_g1	931	951	942	-25.50	-18.90	0.741176470588235	12	5-10,947-942;12-21,940-931	1-4,951-948[UP5];11-11,941-941[SIL]	((((((((((.((((((....&....)))))).))))))))))	GAAGAAAGGAUAGAGGGCCGA&UUUUUUUUCUUUCCUUUCUUC	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN61756_c0_g1_942_TPlot.pdf
TRINITY_DN61765_c0_g1:141	si_a520	TRINITY_DN61765_c0_g1	131	150	141	-40.00	-26.80	0.67	9.5	4-11,147-140;13-21,139-131	1-3,150-148[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	CUUGCGUGU-CGCUUUGCUGU&AAUGUAAGGCGGACACGCGAG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a520_TRINITY_DN61765_c0_g1_141_TPlot.pdf
TRINITY_DN61765_c0_g1:178	si_a65	TRINITY_DN61765_c0_g1	167	187	178	-27.70	-18.50	0.667870036101083	7	1-8,187-180;10-12,178-176;14-21,174-167	9-9,179-179[SIL];13-13,175-175[SIL]	((((((((.(((.((((((((&)))))))).))).))))))))	AGAACAGUGUGGUAGGAGUGA&UCGCUUCUUUCAAAUUGUUUU	2	0.999978361284052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN61765_c0_g1_178_TPlot.pdf
TRINITY_DN6177_c0_g1:1172	si_a334	TRINITY_DN6177_c0_g1	1153	1181	1172	-30.70	-20.40	0.664495114006515	12.5	1-13,1181-1169;14-18,1160-1156	x-x,1168-1161[BULt];19-21,1155-1153[UP3]	...(((((........(((((((((((((&)))))))))))))--------)))))...	GCAUUCGGCUACAAGAGACAAGGAAUGAG&UUUAUUCCUUGUC--------CCGAAAAU	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN6177_c0_g1_1172_TPlot.pdf
TRINITY_DN6177_c0_g1:1173	si_a333	TRINITY_DN6177_c0_g1	1154	1182	1173	-30.60	-20.80	0.679738562091503	13	2-14,1181-1169;15-19,1160-1156	1-1,1182-1182[UP5];x-x,1168-1161[BULt];20-21,1155-1154[UP3]	..(((((........(((((((((((((.&.)))))))))))))--------)))))..	CAUUCGGCUACAAGAGACAAGGAAUGAGG&UUUUAUUCCUUGUC--------CCGAAAA	2	0.975799899695385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN6177_c0_g1_1173_TPlot.pdf
TRINITY_DN6178_c0_g1:1097	si_a304	TRINITY_DN6178_c0_g1	1086	1106	1097	-30.40	-20.10	0.661184210526316	13.5	7-21,1100-1086	1-6,1106-1101[UP5]	(((((((((((((((......&......)))))))))))))))	GGUGAAUUCGAGCGACCCGAA&AAAGAUUCGCUUGGAUUUAUC	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN6178_c0_g1_1097_TPlot.pdf
TRINITY_DN6178_c0_g1:1258	si_a786	TRINITY_DN6178_c0_g1	1244	1267	1258	-26.60	-18.10	0.680451127819549	9.5	2-12,1266-1256;13-20,1252-1245	1-1,1267-1267[UP5];x-x,1255-1253[BULt];21-21,1244-1244[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	UGAAGAUAGUUUGAAAAUAGAAGG&UCUUCUAUUUUU---CUAUUUUCC	3	0.999999999878981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN6178_c0_g1_1258_TPlot.pdf
TRINITY_DN6178_c0_g1:1259	si_a785	TRINITY_DN6178_c0_g1	1245	1268	1259	-25.90	-18.60	0.718146718146718	6	2-13,1267-1256;14-21,1252-1245	1-1,1268-1268[UP5];x-x,1255-1253[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	GAAGAUAGUUUGAAAAUAGAAGGA&CUCUUCUAUUUUU---CUAUUUUC	2	0.999874865257008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6178_c0_g1_1259_TPlot.pdf
TRINITY_DN6178_c0_g1:1425	si_a20	TRINITY_DN6178_c0_g1	1415	1434	1425	-26.70	-18.10	0.677902621722847	6	1-5,1434-1430;7-12,1428-1423;16-21,1420-1415	6-6,1429-1429[SIL];13-15,1422-1421[AILq]	((((((..-((((((.(((((&))))).))))))...))))))	UAGAACGC-AAGUAAUUAGGC&GCCUAUUUAUUUUUAGUUCUA	2	0.999083304905286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN6178_c0_g1_1425_TPlot.pdf
TRINITY_DN6178_c0_g1:2059	si_a759	TRINITY_DN6178_c0_g1	2048	2068	2059	-32.60	-25.60	0.785276073619632	6	1-13,2068-2056;16-20,2053-2049	14-15,2055-2054[SIL];21-21,2048-2048[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	ACAAUCUUAGACCUGAAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN6178_c0_g1_2059_TPlot.pdf
TRINITY_DN6178_c0_g1:2699	si_a764	TRINITY_DN6178_c0_g1	2687	2708	2699	-28.90	-19.50	0.674740484429066	9.5	1-8,2708-2701;11-15,2698-2694;17-20,2691-2688	9-10,2700-2699[SIL];16-16,2693-2692[AILt];21-21,2687-2687[UP3]	.((((..(((((..((((((((&))))))))..)))))-.)))).	CUGAGGACAAUCUUAGACCCGA&UUGGGUUUUUGAUUG-AUUCAA	2	0.999570955846679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6178_c0_g1_2699_TPlot.pdf
TRINITY_DN6178_c0_g1:2700	si_a763	TRINITY_DN6178_c0_g1	2688	2709	2700	-28.80	-20.10	0.697916666666667	8.5	1-9,2709-2701;12-16,2698-2694;18-21,2691-2688	10-11,2700-2699[SIL];17-17,2693-2692[AILt]	((((..(((((..(((((((((&)))))))))..)))))-.))))	UGAGGACAAUCUUAGACCCGAA&UUUGGGUUUUUGAUUG-AUUCA	2	0.994070487741084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN6178_c0_g1_2700_TPlot.pdf
TRINITY_DN6178_c0_g1:2701	si_a762	TRINITY_DN6178_c0_g1	2691	2710	2701	-29.70	-22.10	0.744107744107744	7.5	1-10,2710-2701;13-17,2698-2694;19-21,2693-2691	11-12,2700-2699[SIL];18-18,x-x[BULq]	(((-(((((..((((((((((&))))))))))..))))).)))	GGA-CAAUCUUAGACCCGAAG&CUUUGGGUUUUUGAUUGAUUC	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN6178_c0_g1_2701_TPlot.pdf
TRINITY_DN6178_c0_g1:2704	si_a759	TRINITY_DN6178_c0_g1	2693	2713	2704	-32.60	-28.50	0.874233128834356	5	1-13,2713-2701;16-20,2698-2694	14-15,2700-2699[SIL];21-21,2693-2693[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	ACAAUCUUAGACCCGAAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN6178_c0_g1_2704_TPlot.pdf
TRINITY_DN6178_c0_g1:2705	si_a758	TRINITY_DN6178_c0_g1	2694	2714	2705	-34.00	-28.90	0.85	4.5	2-14,2713-2701;17-21,2698-2694	1-1,2714-2714[UP5];15-16,2700-2699[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	CAAUCUUAGACCCGAAGGAGA&CCUCCUUUGGGUUUUUGAUUG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6178_c0_g1_2705_TPlot.pdf
TRINITY_DN6178_c0_g1:2706	si_a757	TRINITY_DN6178_c0_g1	2695	2715	2706	-33.10	-25.80	0.779456193353474	6.5	3-15,2713-2701;18-21,2698-2695	1-2,2715-2714[UP5];16-17,2700-2699[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AAUCUUAGACCCGAAGGAGAC&ACCUCCUUUGGGUUUUUGAUU	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6178_c0_g1_2706_TPlot.pdf
TRINITY_DN6178_c0_g1:2708	si_a755	TRINITY_DN6178_c0_g1	2697	2717	2708	-34.90	-23.80	0.681948424068768	10.5	5-17,2713-2701;20-21,2698-2697	1-4,2717-2714[UP5];18-19,2700-2699[SIL]	((..(((((((((((((....&....)))))))))))))..))	UCUUAGACCCGAAGGAGACUU&GAACCUCCUUUGGGUUUUUGA	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN6178_c0_g1_2708_TPlot.pdf
TRINITY_DN6178_c0_g1:2710	si_a753	TRINITY_DN6178_c0_g1	2699	2719	2710	-33.10	-21.60	0.652567975830816	14	7-19,2713-2701	1-6,2719-2714[UP5];20-21,2700-2699[UP3]	..(((((((((((((......&......)))))))))))))..	UUAGACCCGAAGGAGACUUUG&AUGAACCUCCUUUGGGUUUUU	4	0.9999998260223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN6178_c0_g1_2710_TPlot.pdf
TRINITY_DN6178_c0_g1:2957	si_a764	TRINITY_DN6178_c0_g1	2945	2966	2957	-28.90	-19.50	0.674740484429066	9.5	1-8,2966-2959;11-15,2956-2952;17-20,2949-2946	9-10,2958-2957[SIL];16-16,2951-2950[AILt];21-21,2945-2945[UP3]	.((((..(((((..((((((((&))))))))..)))))-.)))).	CUGAGGACAAUCUUAGACCCGA&UUGGGUUUUUGAUUG-AUUCAA	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6178_c0_g1_2957_TPlot.pdf
TRINITY_DN6178_c0_g1:2958	si_a763	TRINITY_DN6178_c0_g1	2946	2967	2958	-28.80	-20.10	0.697916666666667	8.5	1-9,2967-2959;12-16,2956-2952;18-21,2949-2946	10-11,2958-2957[SIL];17-17,2951-2950[AILt]	((((..(((((..(((((((((&)))))))))..)))))-.))))	UGAGGACAAUCUUAGACCCGAA&UUUGGGUUUUUGAUUG-AUUCA	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN6178_c0_g1_2958_TPlot.pdf
TRINITY_DN6178_c0_g1:2960	si_a761	TRINITY_DN6178_c0_g1	2949	2969	2960	-30.10	-24.00	0.79734219269103	8	1-11,2969-2959;14-18,2956-2952	12-13,2958-2957[SIL];19-21,2951-2949[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	GGACAAUCUUAGACCCGAAGG&CCUUUGGGUUUUUGAUUGAUU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN6178_c0_g1_2960_TPlot.pdf
TRINITY_DN6178_c0_g1:2962	si_a759	TRINITY_DN6178_c0_g1	2951	2971	2962	-32.60	-28.50	0.874233128834356	5	1-13,2971-2959;16-20,2956-2952	14-15,2958-2957[SIL];21-21,2951-2951[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	ACAAUCUUAGACCCGAAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN6178_c0_g1_2962_TPlot.pdf
TRINITY_DN6178_c0_g1:2963	si_a758	TRINITY_DN6178_c0_g1	2952	2972	2963	-34.00	-28.90	0.85	4.5	2-14,2971-2959;17-21,2956-2952	1-1,2972-2972[UP5];15-16,2958-2957[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	CAAUCUUAGACCCGAAGGAGA&CCUCCUUUGGGUUUUUGAUUG	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6178_c0_g1_2963_TPlot.pdf
TRINITY_DN6178_c0_g1:2964	si_a757	TRINITY_DN6178_c0_g1	2953	2973	2964	-33.10	-25.80	0.779456193353474	6.5	3-15,2971-2959;18-21,2956-2953	1-2,2973-2972[UP5];16-17,2958-2957[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AAUCUUAGACCCGAAGGAGAC&ACCUCCUUUGGGUUUUUGAUU	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6178_c0_g1_2964_TPlot.pdf
TRINITY_DN6178_c0_g1:2965	si_a756	TRINITY_DN6178_c0_g1	2954	2974	2965	-33.10	-25.00	0.755287009063444	8.5	4-16,2971-2959;19-21,2956-2954	1-3,2974-2972[UP5];17-18,2958-2957[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	AUCUUAGACCCGAAGGAGACU&AACCUCCUUUGGGUUUUUGAU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN6178_c0_g1_2965_TPlot.pdf
TRINITY_DN6178_c0_g1:2968	si_a753	TRINITY_DN6178_c0_g1	2957	2977	2968	-33.10	-21.60	0.652567975830816	14	7-19,2971-2959	1-6,2977-2972[UP5];20-21,2958-2957[UP3]	..(((((((((((((......&......)))))))))))))..	UUAGACCCGAAGGAGACUUUG&AUGAACCUCCUUUGGGUUUUU	2	0.99994357921746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN6178_c0_g1_2968_TPlot.pdf
TRINITY_DN6178_c0_g1:916	si_s526	TRINITY_DN6178_c0_g1	905	925	916	-25.60	-17.00	0.6640625	8.5	3-18,923-908	1-2,925-924[UP5];19-21,907-905[UP3]	...((((((((((((((((..&..))))))))))))))))...	CCCCGAAGGUGAUUUUGAACG&AAUUCGAAAUCAUUUUUGAUC	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN6178_c0_g1_916_TPlot.pdf
TRINITY_DN6178_c0_g1:919	si_s523	TRINITY_DN6178_c0_g1	908	928	919	-24.50	-16.20	0.661224489795918	11.5	6-21,923-908	1-5,928-924[UP5]	((((((((((((((((.....&.....))))))))))))))))	CGAAGGUGAUUUUGAACGUCC&CUUAAUUCGAAAUCAUUUUUG	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN6178_c0_g1_919_TPlot.pdf
TRINITY_DN6178_c1_g1:77	si_s556	TRINITY_DN6178_c1_g1	66	85	77	-28.50	-18.62	0.653333333333333	11.5	3-5,83-81;10-21,77-66	1-2,85-84[UP5];6-9,80-78[AILq]	((((((((((((...-(((..&..)))....))))))))))))	GUCCCGAAGAUAAUC-UUCGA&UAGAAUUAAUAUUUUCGGGAC	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN6178_c1_g1_77_TPlot.pdf
TRINITY_DN6179_c0_g1:1029	si_a226	TRINITY_DN6179_c0_g1	1018	1038	1029	-27.60	-18.70	0.677536231884058	9.5	2-7,1037-1032;9-18,1030-1021	1-1,1038-1038[UP5];8-8,1031-1031[SIL];19-21,1020-1018[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	ACAGAUUGUGGGAUUAUGAGA&ACUCAUGUUUCUAUAAUCAAU	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN6179_c0_g1_1029_TPlot.pdf
TRINITY_DN6179_c0_g1:1030	si_a225	TRINITY_DN6179_c0_g1	1019	1039	1030	-27.50	-18.70	0.68	10	3-8,1037-1032;10-19,1030-1021	1-2,1039-1038[UP5];9-9,1031-1031[SIL];20-21,1020-1019[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	CAGAUUGUGGGAUUAUGAGAA&AACUCAUGUUUCUAUAAUCAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN6179_c0_g1_1030_TPlot.pdf
TRINITY_DN6179_c0_g1:1031	si_a224	TRINITY_DN6179_c0_g1	1020	1040	1031	-27.40	-18.70	0.682481751824818	11	4-9,1037-1032;11-20,1030-1021	1-3,1040-1038[UP5];10-10,1031-1031[SIL];21-21,1020-1020[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	AGAUUGUGGGAUUAUGAGAAU&AAACUCAUGUUUCUAUAAUCA	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN6179_c0_g1_1031_TPlot.pdf
TRINITY_DN6179_c0_g1:1032	si_a223	TRINITY_DN6179_c0_g1	1021	1041	1032	-27.10	-18.20	0.671586715867159	11.5	5-10,1037-1032;12-21,1030-1021	1-4,1041-1038[UP5];11-11,1031-1031[SIL]	((((((((((.((((((....&....)))))).))))))))))	GAUUGUGGGAUUAUGAGAAUA&UAAACUCAUGUUUCUAUAAUC	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN6179_c0_g1_1032_TPlot.pdf
TRINITY_DN6179_c0_g1:1475	si_s71	TRINITY_DN6179_c0_g1	1464	1488	1475	-25.70	-16.90	0.657587548638132	12.5	1-5,1488-1484;6-8,1479-1477;10-20,1475-1465	x-x,1483-1480[BULt];9-9,1476-1476[SIL];21-21,1464-1464[UP3]	.(((((((((((.(((....(((((&)))))----))).))))))))))).	UGGAAGGAAGAACAAUUACCAGAAG&CUUCU----AUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6179_c0_g1_1475_TPlot.pdf
TRINITY_DN6181_c0_g2:1106	si_s39	TRINITY_DN6181_c0_g2	1095	1115	1106	-22.30	-14.70	0.659192825112108	12.5	6-19,1110-1097	1-5,1115-1111[UP5];20-21,1096-1095[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCAUCCAGUUGUUAAAAAGAA&AAAUCUUUAAUAAUUGGAUUU	4	0.999998884855311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN6181_c0_g2_1106_TPlot.pdf
TRINITY_DN6183_c0_g1:1231	si_a632	TRINITY_DN6183_c0_g1	1220	1240	1231	-26.10	-17.00	0.651340996168582	7.5	1-5,1240-1236;7-19,1234-1222;21-21,1220-1220	6-6,1235-1235[SIL];20-20,1221-1221[SIL]	(.(((((((((((((.(((((&))))).))))))))))))).)	GGUCAGGAAAAUUGGGAUGAU&AUUAUGUCGAUUUUUUUGAGU	2	0.999999708257402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN6183_c0_g1_1231_TPlot.pdf
TRINITY_DN6183_c0_g1:1232	si_a631	TRINITY_DN6183_c0_g1	1221	1241	1232	-25.70	-17.70	0.688715953307393	7	1-6,1241-1236;8-20,1234-1222	7-7,1235-1235[SIL];21-21,1221-1221[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	GUCAGGAAAAUUGGGAUGAUA&UAUUAUGUCGAUUUUUUUGAG	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN6183_c0_g1_1232_TPlot.pdf
TRINITY_DN6183_c0_g1:1233	si_a630	TRINITY_DN6183_c0_g1	1222	1242	1233	-25.80	-20.60	0.798449612403101	6	1-7,1242-1236;9-21,1234-1222	8-8,1235-1235[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	UCAGGAAAAUUGGGAUGAUAC&GUAUUAUGUCGAUUUUUUUGA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN6183_c0_g1_1233_TPlot.pdf
TRINITY_DN6183_c0_g1:1234	si_a629	TRINITY_DN6183_c0_g1	1223	1243	1234	-26.30	-19.00	0.722433460076046	7	2-8,1242-1236;10-21,1234-1223	1-1,1243-1243[UP5];9-9,1235-1235[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	CAGGAAAAUUGGGAUGAUACU&CGUAUUAUGUCGAUUUUUUUG	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN6183_c0_g1_1234_TPlot.pdf
TRINITY_DN6183_c0_g1:245	si_a785	TRINITY_DN6183_c0_g1	234	255	245	-25.90	-17.70	0.683397683397683	8.5	1-9,255-247;11-20,244-235	10-10,246-245[AILt];21-21,234-234[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	AAAGGUAGGAAUUAUAGGAGGG&CUCUUCUAU-UUUUCUAUUUUC	2	0.999999984726266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6183_c0_g1_245_TPlot.pdf
TRINITY_DN6183_c0_g1:247	si_a784	TRINITY_DN6183_c0_g1	235	256	247	-24.70	-17.70	0.716599190283401	8.5	2-10,255-247;12-21,244-235	1-1,256-256[UP5];11-11,246-245[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	AAGGUAGGAAUUAUAGGAGGGA&ACUCUUCUAU-UUUUCUAUUUU	2	0.999852888465746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6183_c0_g1_247_TPlot.pdf
TRINITY_DN6183_c0_g1:248	si_a783	TRINITY_DN6183_c0_g1	236	257	248	-24.70	-16.80	0.680161943319838	10.5	3-11,255-247;13-21,244-236	1-2,257-256[UP5];12-12,246-245[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	AGGUAGGAAUUAUAGGAGGGAC&AACUCUUCUAU-UUUUCUAUUU	4	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN6183_c0_g1_248_TPlot.pdf
TRINITY_DN6183_c0_g1:294	si_s77	TRINITY_DN6183_c0_g1	283	303	294	-25.50	-16.80	0.658823529411765	7	1-15,303-289	16-21,288-283[UP3]	......(((((((((((((((&)))))))))))))))......	AAAAACAGGAAAGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6183_c0_g1_294_TPlot.pdf
TRINITY_DN6183_c0_g1:295	si_s76	TRINITY_DN6183_c0_g1	284	304	295	-23.60	-16.80	0.711864406779661	7	2-16,303-289	1-1,304-304[UP5];17-21,288-284[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAAACAGGAAAGAAAAGAAAG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6183_c0_g1_295_TPlot.pdf
TRINITY_DN6183_c0_g1:296	si_s75	TRINITY_DN6183_c0_g1	285	305	296	-24.00	-16.80	0.7	8	3-17,303-289	1-2,305-304[UP5];18-21,288-285[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAACAGGAAAGAAAAGAAAGU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6183_c0_g1_296_TPlot.pdf
TRINITY_DN6183_c0_g1:298	si_s73	TRINITY_DN6183_c0_g1	287	307	298	-24.00	-16.80	0.7	10	5-19,303-289	1-4,307-304[UP5];20-21,288-287[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAGGAAAGAAAAGAAAGUUA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6183_c0_g1_298_TPlot.pdf
TRINITY_DN6183_c0_g1:299	si_s72	TRINITY_DN6183_c0_g1	288	308	299	-24.10	-16.80	0.697095435684647	11	6-20,303-289	1-5,308-304[UP5];21-21,288-288[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGGAAAGAAAAGAAAGUUAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6183_c0_g1_299_TPlot.pdf
TRINITY_DN6183_c0_g1:300	si_s71	TRINITY_DN6183_c0_g1	289	309	300	-25.70	-16.80	0.653696498054475	12	7-21,303-289	1-6,309-304[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAAAGAAAAGAAAGUUACA&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6183_c0_g1_300_TPlot.pdf
TRINITY_DN6183_c0_g1:764	si_a299	TRINITY_DN6183_c0_g1	753	773	764	-28.30	-18.50	0.653710247349823	8.5	1-6,773-768;9-19,765-755	7-8,767-766[SIL];20-21,754-753[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	AACCAGGUGAAUUGGUUUUAG&UUAAAAAAGAUUCGCUUGGAU	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN6183_c0_g1_764_TPlot.pdf
TRINITY_DN6183_c0_g1:907	si_a879	TRINITY_DN6183_c0_g1	896	916	907	-27.40	-18.20	0.664233576642336	8.5	1-9,916-908;12-20,905-897	10-11,907-906[SIL];21-21,896-896[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	CUUAUAUUGAAGGUAGCUGAA&UUUAGUUGCAAUCAAUAUAGU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN6183_c0_g1_907_TPlot.pdf
TRINITY_DN6183_c0_g1:908	si_a878	TRINITY_DN6183_c0_g1	897	917	908	-26.70	-18.10	0.677902621722847	8.5	2-10,916-908;13-21,905-897	1-1,917-917[UP5];11-12,907-906[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	UUAUAUUGAAGGUAGCUGAAG&AUUUAGUUGCAAUCAAUAUAG	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN6183_c0_g1_908_TPlot.pdf
TRINITY_DN61840_c0_g1:278	si_a311	TRINITY_DN61840_c0_g1	267	287	278	-32.70	-22.40	0.685015290519878	10	1-8,287-280;11-17,277-271	9-10,279-278[SIL];18-21,270-267[UP3]	....(((((((..((((((((&))))))))..)))))))....	GUAUGUGGGUAUUUCCAAGUG&CGCUUGGAUUUAUCCAUGAUU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN61840_c0_g1_278_TPlot.pdf
TRINITY_DN61881_c0_g1:199	si_s16	TRINITY_DN61881_c0_g1	188	208	199	-25.60	-19.20	0.75	5	1-14,208-195;16-19,193-190	15-15,194-194[SIL];20-21,189-188[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UAGCAGCCGGUAUAGUAAUAA&UUAUUACUAUAUUGAUUGCAA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN61881_c0_g1_199_TPlot.pdf
TRINITY_DN61898_c0_g1:260	si_s481	TRINITY_DN61898_c0_g1	249	269	260	-23.00	-15.90	0.691304347826087	11	1-12,269-258	13-21,257-249[UP3]	.........((((((((((((&)))))))))))).........	CUCCUCAUGGAAUAUGGGAUC&GAUCCUAUAUUUAUUUAAAUA	3	0.988825681843474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN61898_c0_g1_260_TPlot.pdf
TRINITY_DN6191_c0_g1:1886	si_a771	TRINITY_DN6191_c0_g1	1875	1895	1886	-29.40	-19.30	0.656462585034014	6	1-6,1895-1890;8-12,1888-1884;14-21,1882-1875	7-7,1889-1889[SIL];13-13,1883-1883[SIL]	((((((((.(((((.((((((&)))))).))))).))))))))	AGGGGAGUGGAGUUUAUCAAA&UUUGAUUGAUUCAACUCUUCU	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN6191_c0_g1_1886_TPlot.pdf
TRINITY_DN6191_c0_g1:1888	si_a769	TRINITY_DN6191_c0_g1	1877	1897	1888	-26.70	-17.60	0.659176029962547	7	1-8,1897-1890;10-14,1888-1884;16-21,1882-1877	9-9,1889-1889[SIL];15-15,1883-1883[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	GGGAGUGGAGUUUAUCAAAGA&UUUUUGAUUGAUUCAACUCUU	4	0.999897520703814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN6191_c0_g1_1888_TPlot.pdf
TRINITY_DN6191_c0_g1:1895	si_s74	TRINITY_DN6191_c0_g1	1872	1904	1895	-25.00	-16.60	0.664	28.5	1-11,1904-1894;12-21,1881-1872	x-x,1893-1882[BULt]	((((((((((............(((((((((((&)))))))))))------------))))))))))	GAGAGGGGAGUGGAGUUUAUCAAAGAAAGAUGG&CUAUUUUUUUU------------CUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6191_c0_g1_1895_TPlot.pdf
TRINITY_DN6191_c0_g1:308	si_a799	TRINITY_DN6191_c0_g1	297	317	308	-32.50	-21.40	0.658461538461538	7	1-14,317-304;16-18,302-300	15-15,303-303[SIL];19-21,299-297[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	CAAGUUCCGGGUUGGAAAGUG&UAUUUUCCAAUCCGAAGCGAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN6191_c0_g1_308_TPlot.pdf
TRINITY_DN6191_c0_g1:312	si_a795	TRINITY_DN6191_c0_g1	301	321	312	-30.20	-19.70	0.652317880794702	12.5	5-18,317-304	1-4,321-318[UP5];19-21,303-301[UP3]	...((((((((((((((....&....))))))))))))))...	UUCCGGGUUGGAAAGUGCUAC&UUUCUAUUUUCCAAUCCGAAG	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN6191_c0_g1_312_TPlot.pdf
TRINITY_DN6191_c0_g1:313	si_a794	TRINITY_DN6191_c0_g1	302	322	313	-28.60	-19.70	0.688811188811189	13.5	6-19,317-304	1-5,322-318[UP5];20-21,303-302[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCCGGGUUGGAAAGUGCUACU&UUUUCUAUUUUCCAAUCCGAA	2	0.964845900402728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN6191_c0_g1_313_TPlot.pdf
TRINITY_DN6191_c0_g1:314	si_a793	TRINITY_DN6191_c0_g1	303	323	314	-28.50	-19.70	0.691228070175439	14.5	7-20,317-304	1-6,323-318[UP5];21-21,303-303[UP3]	.((((((((((((((......&......)))))))))))))).	CCGGGUUGGAAAGUGCUACUC&UUUUUCUAUUUUCCAAUCCGA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN6191_c0_g1_314_TPlot.pdf
TRINITY_DN6191_c0_g1:315	si_a792	TRINITY_DN6191_c0_g1	304	324	315	-27.60	-18.90	0.684782608695652	15.5	8-21,317-304	1-7,324-318[UP5]	((((((((((((((.......&.......))))))))))))))	CGGGUUGGAAAGUGCUACUCA&AUUUUUCUAUUUUCCAAUCCG	2	0.991493077225997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN6191_c0_g1_315_TPlot.pdf
TRINITY_DN6192_c0_g1:337	si_s802	TRINITY_DN6192_c0_g1	326	347	337	-26.40	-17.40	0.659090909090909	5	1-4,347-344;5-16,342-331;18-21,329-326	x-x,343-343[BULt];17-17,330-330[SIL]	((((.((((((((((((.((((&))))-)))))))))))).))))	GAAGAUAACGAAGAUAACGAUG&UAUU-UUAUCUUCGUUACCUUU	4	0.9999999999757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN6192_c0_g1_337_TPlot.pdf
TRINITY_DN6192_c0_g1:339	si_s800	TRINITY_DN6192_c0_g1	324	349	339	-29.70	-19.40	0.653198653198653	9	2-6,348-344;7-18,342-331;19-21,326-324	1-1,349-349[UP5];x-x,343-343[BULt];x-x,330-327[BULt]	(((....((((((((((((.(((((.&.)))))-))))))))))))----)))	AGGAAGAUAACGAAGAUAACGAUGCU&CGUAUU-UUAUCUUCGUUA----CCU	4	0.999969681393287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6192_c0_g1_339_TPlot.pdf
TRINITY_DN6192_c0_g2:341	si_s803	TRINITY_DN6192_c0_g2	330	350	341	-26.00	-17.40	0.669230769230769	9.5	4-14,347-337;16-18,335-333	1-3,350-348[UP5];15-15,336-336[SIL];19-21,332-330[UP3]	...(((.(((((((((((...&...))))))))))).)))...	CUCAGGCGACGAAGAUAACGA&AUUUUAUCUUCGUUACCUUUU	4	0.999999999997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6192_c0_g2_341_TPlot.pdf
TRINITY_DN6192_c0_g2:352	si_s801	TRINITY_DN6192_c0_g2	341	362	352	-28.20	-19.50	0.691489361702128	5	1-5,362-358;6-17,356-345;19-21,343-341	x-x,357-357[BULt];18-18,344-344[SIL]	(((.((((((((((((.(((((&)))))-)))))))))))).)))	AAGAUAACGAAGAUAACGAUGC&GUAUU-UUAUCUUCGUUACCUU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN6192_c0_g2_352_TPlot.pdf
TRINITY_DN6192_c0_g2:370	si_s91	TRINITY_DN6192_c0_g2	355	379	370	-34.70	-22.60	0.651296829971182	10	3-16,377-364;17-19,359-357	1-2,379-378[UP5];x-x,363-360[BULt];20-21,356-355[UP3]	..(((....((((((((((((((..&..))))))))))))))----)))..	AACGAUGCUGGUGAAGAAGAAGAUG&UUUCUUCUUCUUCGCU----UCGGA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6192_c0_g2_370_TPlot.pdf
TRINITY_DN6195_c0_g1:816	si_a70	TRINITY_DN6195_c0_g1	805	825	816	-23.90	-17.08	0.714644351464435	5.5	1-11,825-815;15-21,811-805	12-14,814-812[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	GAUGAAAUGAAAUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6195_c0_g1_816_TPlot.pdf
TRINITY_DN61963_c0_g1:68	si_s797	TRINITY_DN61963_c0_g1	57	76	68	-30.00	-20.40	0.68	10.5	1-8,76-69;11-17,67-61	9-10,68-68[AILq];18-21,60-57[UP3]	....(((((((.-((((((((&))))))))..)))))))....	AUCGGGAGAUAU-GUGCGAGC&GCUCGUAUUUUAUCUUCGUUA	4	0.999989198946718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN61963_c0_g1_68_TPlot.pdf
TRINITY_DN6196_c0_g1:6401	si_a768	TRINITY_DN6196_c0_g1	6390	6413	6401	-28.40	-20.40	0.71830985915493	9.5	1-8,6413-6406;9-13,6402-6398;15-21,6396-6390	x-x,6405-6403[BULt];14-14,6397-6397[SIL]	(((((((.(((((...((((((((&))))))))---))))).)))))))	GGAGUUGCAUCGAUCCUCAAAGAC&GUUUUUGA---UUGAUUCAACUCU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN6196_c0_g1_6401_TPlot.pdf
TRINITY_DN6196_c0_g1:6716	si_a318	TRINITY_DN6196_c0_g1	6706	6725	6716	-22.50	-16.60	0.737777777777778	7.5	1-10,6725-6716;12-21,6715-6706	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	GUGAGAAAAU-GUGGGUGGAU&AUUUAUCCAUGAUUUUUUUAU	2	0.990244922553744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN6196_c0_g1_6716_TPlot.pdf
TRINITY_DN6197_c0_g1:4046	si_a641	TRINITY_DN6197_c0_g1	4034	4055	4046	-23.60	-15.60	0.661016949152542	6.5	2-16,4054-4040;17-21,4038-4034	1-1,4055-4055[UP5];x-x,4039-4039[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	UGAUAUUAUUAUUCGAAGAAGC&AUUUUUUUGAGUAAUA-UAUCG	4	0.999980747715898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN6197_c0_g1_4046_TPlot.pdf
TRINITY_DN6198_c0_g1:4264	si_a88	TRINITY_DN6198_c0_g1	4253	4275	4264	-26.40	-17.70	0.670454545454545	9.5	3-8,4273-4268;9-20,4265-4254	1-2,4275-4274[UP5];x-x,4267-4266[BULt];21-21,4253-4253[UP3]	.((((((((((((..((((((..&..))))))--)))))))))))).	CUGUUACCUUUUCAGUUGAUAGA&AUUAUUAA--GAAAAGGUAACGA	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a88_TRINITY_DN6198_c0_g1_4264_TPlot.pdf
TRINITY_DN61_c0_g1:1885	si_s490	TRINITY_DN61_c0_g1	1874	1894	1885	-17.80	-12.10	0.679775280898876	8.5	2-5,1893-1890;7-18,1888-1877	1-1,1894-1894[UP5];6-6,1889-1889[SIL];19-21,1876-1874[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	AUCUGUUUGUGUUUGUAUAAU&UUUAUUUAAAUAUAAACAAAA	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN61_c0_g1_1885_TPlot.pdf
TRINITY_DN62005_c0_g1:510	si_s788	TRINITY_DN62005_c0_g1	499	519	510	-26.20	-17.90	0.683206106870229	10.5	4-16,516-504	1-3,519-517[UP5];17-21,503-499[UP3]	.....(((((((((((((...&...))))))))))))).....	UUUGUUAUGAGCUUGUUUGAA&AUAAAACAAGCUCGUAUUUUA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN62005_c0_g1_510_TPlot.pdf
TRINITY_DN6200_c0_g1:793	si_s771	TRINITY_DN6200_c0_g1	783	802	793	-25.20	-17.30	0.686507936507937	6.5	1-11,802-792;13-17,791-787	12-12,x-x[BULq];18-21,786-783[UP3]	....(((((-(((((((((((&))))))))))).)))))....	UUCAAGCGA-AGUAAUUAAUC&GAUUAAUUACUAUUGCUAUAA	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN6200_c0_g1_793_TPlot.pdf
TRINITY_DN6204_c0_g1:1826	si_s207	TRINITY_DN6204_c0_g1	1814	1835	1826	-33.00	-23.40	0.709090909090909	10	3-13,1833-1823;14-18,1821-1817	1-2,1835-1834[UP5];x-x,1822-1822[BULt];19-21,1816-1814[UP3]	...(((((.(((((((((((..&..)))))))))))-)))))...	CUCUGAGCAACGACUGGUGCGG&AUGUACCAGUUGU-GUUCGAAA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN6204_c0_g1_1826_TPlot.pdf
TRINITY_DN6204_c0_g1:3179	si_a508	TRINITY_DN6204_c0_g1	3168	3190	3179	-36.30	-23.60	0.650137741046832	10.5	1-9,3190-3182;10-17,3179-3172	x-x,3181-3180[BULt];18-21,3171-3168[UP3]	....((((((((..(((((((((&)))))))))--))))))))....	GGAAGCAUUCUACUGGGAAGACG&CGUCUUCCU--UGGAAUGUAAGG	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN6204_c0_g1_3179_TPlot.pdf
TRINITY_DN6204_c0_g1:3422	si_s169	TRINITY_DN6204_c0_g1	3413	3430	3422	-44.00	-31.30	0.711363636363636	8.5	1-9,3430-3422;13-20,3421-3414	10-12,x-x[BULq];21-21,3413-3413[UP3]	.((((((((---(((((((((&)))))))))...)))))))).	GUGGGCAUC---AUCCCUGGC&GCCAGGGGUAAAGAUGCCCGA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s169_TRINITY_DN6204_c0_g1_3422_TPlot.pdf
TRINITY_DN6204_c0_g1:3423	si_s167	TRINITY_DN6204_c0_g1	3415	3432	3423	-44.60	-30.70	0.688340807174888	7	1-1,3432-3432;3-11,3430-3422;15-21,3421-3415	2-2,3431-3431[SIL];12-14,x-x[BULq]	(((((((---(((((((((.(&).)))))))))...)))))))	GGGCAUC---AUCCCUGGCGA&UGGCCAGGGGUAAAGAUGCCC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s167_TRINITY_DN6204_c0_g1_3423_TPlot.pdf
TRINITY_DN6204_c0_g1:3805	si_s80	TRINITY_DN6204_c0_g1	3794	3814	3805	-28.20	-22.40	0.794326241134752	5	1-17,3814-3798;20-21,3795-3794	18-19,3797-3796[SIL]	((..(((((((((((((((((&)))))))))))))))))..))	GACAGAGAGAGGAAAGAGAGA&UUUUUCUUUCCUUUCUUCUUC	4	0.999890973838539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6204_c0_g1_3805_TPlot.pdf
TRINITY_DN6204_c0_g1:3806	si_s79	TRINITY_DN6204_c0_g1	3795	3815	3806	-26.20	-22.20	0.847328244274809	7	2-18,3814-3798	1-1,3815-3815[UP5];19-21,3797-3795[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACAGAGAGAGGAAAGAGAGAG&UUUUUUCUUUCCUUUCUUCUU	2	0.93690066453088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6204_c0_g1_3806_TPlot.pdf
TRINITY_DN6204_c0_g1:3807	si_s78	TRINITY_DN6204_c0_g1	3796	3816	3807	-26.20	-23.90	0.912213740458015	6	1-19,3816-3798	20-21,3797-3796[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CAGAGAGAGGAAAGAGAGAGA&UUUUUUUCUUUCCUUUCUUCU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6204_c0_g1_3807_TPlot.pdf
TRINITY_DN6204_c0_g1:3808	si_s77	TRINITY_DN6204_c0_g1	3797	3817	3808	-25.50	-24.80	0.972549019607843	5	1-20,3817-3798	21-21,3797-3797[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AGAGAGAGGAAAGAGAGAGAA&UUUUUUUUCUUUCCUUUCUUC	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6204_c0_g1_3808_TPlot.pdf
TRINITY_DN6204_c0_g1:3810	si_s75	TRINITY_DN6204_c0_g1	3799	3819	3810	-24.00	-23.50	0.979166666666667	6.5	3-21,3817-3799	1-2,3819-3818[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAGAGGAAAGAGAGAGAAGA&UAUUUUUUUUCUUUCCUUUCU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6204_c0_g1_3810_TPlot.pdf
TRINITY_DN6204_c0_g1:3811	si_s74	TRINITY_DN6204_c0_g1	3800	3820	3811	-25.00	-22.20	0.888	8.5	4-21,3817-3800	1-3,3820-3818[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAGAGGAAAGAGAGAGAAGAU&CUAUUUUUUUUCUUUCCUUUC	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6204_c0_g1_3811_TPlot.pdf
TRINITY_DN6204_c0_g1:3813	si_s72	TRINITY_DN6204_c0_g1	3802	3822	3813	-24.10	-18.20	0.755186721991701	12.5	6-21,3817-3802	1-5,3822-3818[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGGAAAGAGAGAGAAGAUUG&UUCUAUUUUUUUUCUUUCCUU	4	0.999999947454981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6204_c0_g1_3813_TPlot.pdf
TRINITY_DN6204_c0_g1:3836	si_s70	TRINITY_DN6204_c0_g1	3825	3844	3836	-25.80	-19.20	0.744186046511628	7	1-6,3844-3839;8-20,3838-3826	7-7,x-x[BULq];21-21,3825-3825[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AGAGAGAGAGAGAG-AGAAGU&ACUUCUAUUUUUUUUCUUUCC	3	0.999893804115188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6204_c0_g1_3836_TPlot.pdf
TRINITY_DN6204_c0_g1:3978	si_s94	TRINITY_DN6204_c0_g1	3965	3987	3978	-35.50	-23.20	0.653521126760563	9.5	4-15,3984-3973;16-20,3970-3966	1-3,3987-3985[UP5];x-x,3972-3971[BULt];21-21,3965-3965[UP3]	.(((((..((((((((((((...&...))))))))))))--))))).	UGGUCCCAGGAGCGAAGAAGUCA&CUUCUUCUUCGCUUC--GGAUUG	3	0.999999998680878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN6204_c0_g1_3978_TPlot.pdf
TRINITY_DN6204_c0_g1:3979	si_s93	TRINITY_DN6204_c0_g1	3966	3988	3979	-34.80	-22.90	0.658045977011494	10.5	5-16,3984-3973;17-21,3970-3966	1-4,3988-3985[UP5];x-x,3972-3971[BULt]	(((((..((((((((((((....&....))))))))))))--)))))	GGUCCCAGGAGCGAAGAAGUCAA&UCUUCUUCUUCGCUUC--GGAUU	4	0.999999999999898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN6204_c0_g1_3979_TPlot.pdf
TRINITY_DN6206_c0_g1:1067	si_a69	TRINITY_DN6206_c0_g1	1056	1076	1067	-24.00	-15.90	0.6625	6.5	1-9,1076-1068;11-18,1066-1059	10-10,1067-1067[SIL];19-21,1058-1056[UP3]	...((((((((.(((((((((&))))))))).))))))))...	ACAGAAGACAAAUUGAAAGAG&UUCUUUCAAAUUGUUUUUCAU	2	0.999999956549988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN6206_c0_g1_1067_TPlot.pdf
TRINITY_DN6207_c0_g1:2501	si_a543	TRINITY_DN6207_c0_g1	2486	2510	2501	-28.70	-19.70	0.686411149825784	13	2-10,2509-2501;11-18,2496-2489	1-1,2510-2510[UP5];x-x,2500-2497[BULt];19-21,2488-2486[UP3]	...((((((((....(((((((((.&.)))))))))----))))))))...	UUUGGAAUGGAAAAUUUGAACCGAA&AUCGGUUCAA----UCUAUUUCUUU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN6207_c0_g1_2501_TPlot.pdf
TRINITY_DN6207_c0_g1:4027	si_a173	TRINITY_DN6207_c0_g1	4017	4036	4027	-33.80	-23.70	0.701183431952663	6.5	1-11,4036-4026;13-18,4025-4020	12-12,x-x[BULq];19-21,4019-4017[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CUGGUUAUC-AGAUGGGUGAA&UUCACCCGUCUAGAUAAUAUC	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN6207_c0_g1_4027_TPlot.pdf
TRINITY_DN6207_c0_g1:5793	si_a460	TRINITY_DN6207_c0_g1	5782	5802	5793	-21.60	-14.50	0.671296296296296	5.5	1-14,5802-5789;17-19,5786-5784	15-16,5788-5787[SIL];20-21,5783-5782[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UGUGCUGAUUAUAUAUAAUAA&UUGUUAUAUAUAAUAUGUAAU	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN6207_c0_g1_5793_TPlot.pdf
TRINITY_DN6207_c0_g1:6749	si_a885	TRINITY_DN6207_c0_g1	6738	6758	6749	-25.60	-16.78	0.65546875	4.5	1-12,6758-6747;16-21,6743-6738	13-15,6746-6744[SIL]	((((((...((((((((((((&))))))))))))...))))))	GUUAUUUUAAUAUUGGUUGCA&UGCAAUCAAUAUAGUAAUAAU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN6207_c0_g1_6749_TPlot.pdf
TRINITY_DN6209_c0_g1:1081	si_s63	TRINITY_DN6209_c0_g1	1070	1090	1081	-25.80	-16.90	0.655038759689922	9.5	1-8,1090-1083;10-17,1081-1074	9-9,1082-1082[SIL];18-21,1073-1070[UP3]	....((((((((.((((((((&)))))))).))))))))....	GGACGAAUAGGAAUUGCUGGC&GUUAGCAACUUCUAUUUUUUU	3	0.999999985327344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN6209_c0_g1_1081_TPlot.pdf
TRINITY_DN6209_c1_g1:493	si_a404	TRINITY_DN6209_c1_g1	482	502	493	-21.70	-15.80	0.728110599078341	8	3-19,500-484	1-2,502-501[UP5];20-21,483-482[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACGAUGUAAAUAAAGCAAUAG&GAAUUGUUUUGUUUAUAUUUA	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6209_c1_g1_493_TPlot.pdf
TRINITY_DN6209_c1_g1:751	si_a414	TRINITY_DN6209_c1_g1	740	760	751	-18.10	-12.00	0.662983425414365	5	1-2,760-759;4-16,757-745;18-21,743-740	3-3,758-758[SIL];17-17,744-744[SIL]	((((.(((((((((((((.((&)).))))))))))))).))))	UAUAAUUAUUUAAGUGUACAC&GUUUAUAUUUAAAUAAAUAUA	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN6209_c1_g1_751_TPlot.pdf
TRINITY_DN620_c0_g1:1201	si_s79	TRINITY_DN620_c0_g1	1190	1210	1201	-26.20	-18.80	0.717557251908397	11.5	4-8,1207-1203;10-20,1201-1191	1-3,1210-1208[UP5];9-9,1202-1202[SIL];21-21,1190-1190[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CAGAAGAGAGGGUAGGAGCAU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN620_c0_g1_1201_TPlot.pdf
TRINITY_DN620_c0_g1:1468	si_a319	TRINITY_DN620_c0_g1	1457	1478	1468	-22.40	-14.90	0.665178571428572	9.5	4-8,1475-1471;9-20,1469-1458	1-3,1478-1476[UP5];x-x,1470-1470[BULt];21-21,1457-1457[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	CAUGGGAAAAUCAUUGGAUUUA&UUUAUCCA-UGAUUUUUUUAUU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN620_c0_g1_1468_TPlot.pdf
TRINITY_DN620_c0_g1:1469	si_a318	TRINITY_DN620_c0_g1	1458	1479	1469	-22.50	-14.90	0.662222222222222	10.5	5-9,1475-1471;10-21,1469-1458	1-4,1479-1476[UP5];x-x,1470-1470[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	AUGGGAAAAUCAUUGGAUUUAC&AUUUAUCCA-UGAUUUUUUUAU	2	0.999999992200633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN620_c0_g1_1469_TPlot.pdf
TRINITY_DN620_c0_g1:1615	si_s552	TRINITY_DN620_c0_g1	1604	1624	1615	-21.10	-15.60	0.739336492890995	3	1-12,1624-1613;14-21,1611-1604	13-13,1612-1612[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	CGAGGAUACUAAUUUUAUUUU&AAAAUAGAAUUAAUAUUUUCG	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN620_c0_g1_1615_TPlot.pdf
TRINITY_DN62107_c0_g1:238	si_a401	TRINITY_DN62107_c0_g1	227	247	238	-22.60	-14.70	0.650442477876106	9.5	4-5,244-243;7-21,241-227	1-3,247-245[UP5];6-6,242-242[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	AUGUAAGCGAAAUAACUCACA&AUAGAAUUGUUUUGUUUAUAU	2	0.999999989870908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN62107_c0_g1_238_TPlot.pdf
TRINITY_DN62117_c0_g1:284	si_a874	TRINITY_DN62117_c0_g1	273	292	284	-26.70	-17.60	0.659176029962547	8.5	2-7,291-286;9-18,285-276	1-1,292-292[UP5];8-8,x-x[BULq];19-21,275-273[UP3]	...((((((((((-((((((.&.)))))).))))))))))...	GGAGAUUGUAACU-GGUCUUA&AAAGAUUUAGUUGCAAUCAAU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN62117_c0_g1_284_TPlot.pdf
TRINITY_DN6211_c0_g1:1849	si_a303	TRINITY_DN6211_c0_g1	1838	1858	1849	-28.40	-19.10	0.672535211267606	12.5	5-6,1854-1853;9-21,1850-1838	1-4,1858-1855[UP5];7-8,1852-1851[SIL]	(((((((((((((..((....&....))..)))))))))))))	GUAAAUCCAAGUGUCUCGGGU&AAAAGAUUCGCUUGGAUUUAU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN6211_c0_g1_1849_TPlot.pdf
TRINITY_DN6211_c0_g3:1725	si_a320	TRINITY_DN6211_c0_g3	1713	1734	1725	-24.40	-16.80	0.688524590163935	7.5	2-6,1733-1729;8-10,1727-1725;11-21,1723-1713	1-1,1734-1734[UP5];7-7,1728-1728[SIL];x-x,1724-1724[BULt]	(((((((((((.(((.(((((.&.))))).)))-)))))))))))	GAGUAAAAAAAUUCGAGGAUGG&UUAUCCAUGA-UUUUUUUAUUC	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN6211_c0_g3_1725_TPlot.pdf
TRINITY_DN6211_c2_g1:1123	si_a763	TRINITY_DN6211_c2_g1	1111	1132	1123	-28.80	-21.70	0.753472222222222	3.5	1-15,1132-1118;16-19,1116-1113	x-x,1117-1117[BULt];20-21,1112-1111[UP3]	..((((.(((((((((((((((&)))))))))))))))-))))..	AAAAUCAAGUCAAAAACCCAAA&UUUGGGUUUUUGAUU-GAUUCA	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN6211_c2_g1_1123_TPlot.pdf
TRINITY_DN6211_c2_g1:1671	si_s814	TRINITY_DN6211_c2_g1	1658	1680	1671	-26.60	-18.20	0.684210526315789	10	1-7,1680-1674;9-13,1672-1668;14-20,1665-1659	8-8,1673-1673[SIL];x-x,1667-1666[BULt];21-21,1658-1658[UP3]	.(((((((..(((((.(((((((&))))))).)))))--))))))).	CCAUUGUUUGGGGGAUGGGUAGC&GUUACCUUUUCUU--AAUAAUGA	2	0.813668902268251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN6211_c2_g1_1671_TPlot.pdf
TRINITY_DN6211_c2_g1:1672	si_s813	TRINITY_DN6211_c2_g1	1659	1681	1672	-27.10	-19.10	0.70479704797048	8.5	1-8,1681-1674;10-14,1672-1668;15-21,1665-1659	9-9,1673-1673[SIL];x-x,1667-1666[BULt]	(((((((..(((((.((((((((&)))))))).)))))--)))))))	CAUUGUUUGGGGGAUGGGUAGCG&CGUUACCUUUUCUU--AAUAAUG	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN6211_c2_g1_1672_TPlot.pdf
TRINITY_DN62129_c0_g1:102	si_a336	TRINITY_DN62129_c0_g1	91	116	102	-31.20	-21.20	0.67948717948718	16	3-9,114-108;10-20,102-92	1-2,116-115[UP5];x-x,107-103[BULt];21-21,91-91[UP3]	.(((((((((((.....(((((((..&..)))))))-----))))))))))).	UUAUUUUCGGGGGGAGUCAAGGAGCU&UAUUCCUUG-----UCCCGAAAAUAU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN62129_c0_g1_102_TPlot.pdf
TRINITY_DN62129_c0_g1:93	si_a345	TRINITY_DN62129_c0_g1	82	102	93	-26.90	-17.68	0.65724907063197	6.5	1-11,102-92;15-19,88-84	12-14,91-89[SIL];20-21,83-82[UP3]	..(((((...(((((((((((&)))))))))))...)))))..	UCAGAAUAUUUAUUUUCGGGG&UCCCGAAAAUAUUAAUUCUAU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN62129_c0_g1_93_TPlot.pdf
TRINITY_DN6212_c0_g1:1810	si_a404	TRINITY_DN6212_c0_g1	1799	1819	1810	-21.70	-14.80	0.682027649769585	7.5	1-5,1819-1815;8-20,1812-1800	6-7,1814-1813[SIL];21-21,1799-1799[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	AAAAUGUGGAUAAAUAAAUUC&GAAUUGUUUUGUUUAUAUUUA	2	0.999999874847402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6212_c0_g1_1810_TPlot.pdf
TRINITY_DN6212_c0_g1:1811	si_a403	TRINITY_DN6212_c0_g1	1800	1820	1811	-22.00	-14.50	0.659090909090909	7.5	2-6,1819-1815;9-21,1812-1800	1-1,1820-1820[UP5];7-8,1814-1813[SIL]	(((((((((((((..(((((.&.)))))..)))))))))))))	AAAUGUGGAUAAAUAAAUUCG&AGAAUUGUUUUGUUUAUAUUU	2	0.99999999915955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6212_c0_g1_1811_TPlot.pdf
TRINITY_DN6212_c0_g1:837	si_s72	TRINITY_DN6212_c0_g1	825	847	837	-24.10	-16.00	0.663900414937759	7.5	1-3,847-845;4-12,843-835;14-21,832-825	x-x,844-844[BULt];13-13,834-833[AILt]	((((((((..(((((((((.(((&)))-)))))))))-.))))))))	AAGGAGAGUUAAAGGAAUAUGAA&UUC-UAUUUUUUU-UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6212_c0_g1_837_TPlot.pdf
TRINITY_DN6212_c0_g1:838	si_s71	TRINITY_DN6212_c0_g1	826	848	838	-25.70	-17.60	0.684824902723736	6.5	1-4,848-845;5-13,843-835;15-21,832-826	x-x,844-844[BULt];14-14,834-833[AILt]	(((((((..(((((((((.((((&))))-)))))))))-.)))))))	AGGAGAGUUAAAGGAAUAUGAAG&CUUC-UAUUUUUUU-UCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6212_c0_g1_838_TPlot.pdf
TRINITY_DN6212_c0_g1:839	si_s70	TRINITY_DN6212_c0_g1	827	849	839	-25.80	-17.80	0.689922480620155	6.5	1-5,849-845;6-14,843-835;16-21,832-827	x-x,844-844[BULt];15-15,834-833[AILt]	((((((..(((((((((.(((((&)))))-)))))))))-.))))))	GGAGAGUUAAAGGAAUAUGAAGU&ACUUC-UAUUUUUUU-UCUUUCC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6212_c0_g1_839_TPlot.pdf
TRINITY_DN6213_c0_g2:598	si_a40	TRINITY_DN6213_c0_g2	588	608	598	-40.50	-27.60	0.681481481481481	7.5	2-6,607-603;7-15,601-593;17-19,592-590	1-1,608-608[UP5];x-x,602-602[BULt];16-16,x-x[BULq];20-21,589-588[UP3]	..(((-(((((((((.(((((.&.)))))-))))))))).)))..	GAUCC-AGGCCUGCCAGGUCUA&AAGACC-GGUAGGUCUAGGAGU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN6213_c0_g2_598_TPlot.pdf
TRINITY_DN6213_c0_g2:599	si_a39	TRINITY_DN6213_c0_g2	589	609	599	-40.10	-27.60	0.688279301745636	8.5	3-7,607-603;8-16,601-593;18-20,592-590	1-2,609-608[UP5];x-x,602-602[BULt];17-17,x-x[BULq];21-21,589-589[UP3]	.(((-(((((((((.(((((..&..)))))-))))))))).))).	AUCC-AGGCCUGCCAGGUCUAC&UAAGACC-GGUAGGUCUAGGAG	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a39_TRINITY_DN6213_c0_g2_599_TPlot.pdf
TRINITY_DN6213_c0_g2:604	si_a35	TRINITY_DN6213_c0_g2	592	616	604	-37.80	-24.74	0.654497354497354	13.5	1-5,616-612;7-11,607-603;12-20,601-593	6-6,611-608[AILt];x-x,602-602[BULt];21-21,592-592[UP3]	.(((((((((.(((((....(((((&)))))---.)))))-))))))))).	CAGGCCUGCCAGGUCUACCAGGAAU&GUUCU---AAGACC-GGUAGGUCUA	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN6213_c0_g2_604_TPlot.pdf
TRINITY_DN6213_c0_g2:661	si_a613	TRINITY_DN6213_c0_g2	649	670	661	-35.30	-23.00	0.651558073654391	10	1-10,670-661;12-18,658-652	11-11,660-659[AILt];19-21,651-649[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	GUCUGCCUGGGGUGAUUGGGAU&AUUCCAAUCG-ACUAGGCGUAU	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN6213_c0_g2_661_TPlot.pdf
TRINITY_DN6213_c0_g2:662	si_a612	TRINITY_DN6213_c0_g2	650	671	662	-35.10	-23.30	0.663817663817664	10	2-11,670-661;13-19,658-652	1-1,671-671[UP5];12-12,660-659[AILt];20-21,651-650[UP3]	..(((((((..((((((((((.&.))))))))))-.)))))))..	UCUGCCUGGGGUGAUUGGGAUG&AAUUCCAAUCG-ACUAGGCGUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN6213_c0_g2_662_TPlot.pdf
TRINITY_DN62146_c0_g1:557	si_s795	TRINITY_DN62146_c0_g1	548	566	557	-30.30	-23.20	0.765676567656766	7.5	3-11,564-556;14-21,555-548	1-2,566-565[UP5];12-13,x-x[BULq]	((((((((--(((((((((..&..)))))))))..))))))))	ACGAGGAU--GAUACGAGCAA&AAGCUCGUAUUUUAUCUUCGU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN62146_c0_g1_557_TPlot.pdf
TRINITY_DN62168_c0_g1:296	si_a780	TRINITY_DN62168_c0_g1	281	305	296	-27.30	-19.98	0.731868131868132	10	1-12,305-294;14-21,288-281	13-13,293-289[AILt]	((((((((.....((((((((((((&))))))))))))----.))))))))	UAGAAAAAAGGAAAGAAGAGUUGGA&UUCAACUCUUCU----AUUUUUCUA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN62168_c0_g1_296_TPlot.pdf
TRINITY_DN62168_c0_g1:300	si_s71	TRINITY_DN62168_c0_g1	289	307	300	-25.70	-18.60	0.723735408560311	9	1-6,307-302;10-21,300-289	7-9,301-301[AILq]	((((((((((((.--((((((&))))))...))))))))))))	AGGAAAGAAGAGU--UGGAAG&CUUCUAUUUUUUUUCUUUCCU	2	0.999999476340904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN62168_c0_g1_300_TPlot.pdf
TRINITY_DN6216_c0_g1:677	si_a78	TRINITY_DN6216_c0_g1	668	686	677	-22.30	-14.70	0.659192825112108	8	3-12,684-675;15-21,674-668	1-2,686-685[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	UUCUUAA--GUGAGGAACAGA&AUUGUUUUUCAUUAUUAAGAA	4	0.999999996100949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN6216_c0_g1_677_TPlot.pdf
TRINITY_DN6217_c0_g2:21	si_s370	TRINITY_DN6217_c0_g2	10	28	21	-43.70	-29.70	0.679633867276888	7.5	1-5,28-24;7-7,22-22;10-20,21-11	6-6,23-23[SIL];8-9,x-x[BULq];21-21,10-10[UP3]	.(((((((((((--(.(((((&))))).)..))))))))))).	CGGCACGCGAGC--UGGGUUC&GAACCGAUCGCUCGCGUGUCC	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s370_TRINITY_DN6217_c0_g2_21_TPlot.pdf
TRINITY_DN6217_c0_g2:22	si_s369	TRINITY_DN6217_c0_g2	11	29	22	-42.00	-30.70	0.730952380952381	6.5	1-6,29-24;8-8,22-22;11-21,21-11	7-7,23-23[SIL];9-10,x-x[BULq]	(((((((((((--(.((((((&)))))).)..)))))))))))	GGCACGCGAGC--UGGGUUCA&UGAACCGAUCGCUCGCGUGUC	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN6217_c0_g2_22_TPlot.pdf
TRINITY_DN62186_c0_g1:350	si_s811	TRINITY_DN62186_c0_g1	338	359	350	-26.40	-18.20	0.689393939393939	8.5	1-13,359-347;14-16,345-343	x-x,346-346[BULt];17-21,342-338[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	UUCUCAAGAAGAAGGUGACGAG&UUCGUUACCUUUU-CUUAAUAA	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN62186_c0_g1_350_TPlot.pdf
TRINITY_DN62186_c0_g1:351	si_s810	TRINITY_DN62186_c0_g1	339	360	351	-27.90	-21.60	0.774193548387097	7.5	1-14,360-347;15-17,345-343	x-x,346-346[BULt];18-21,342-339[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	UCUCAAGAAGAAGGUGACGAGG&CUUCGUUACCUUUU-CUUAAUA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN62186_c0_g1_351_TPlot.pdf
TRINITY_DN62186_c0_g1:352	si_s809	TRINITY_DN62186_c0_g1	340	361	352	-28.50	-21.70	0.76140350877193	7.5	2-15,360-347;16-18,345-343	1-1,361-361[UP5];x-x,346-346[BULt];19-21,342-340[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	CUCAAGAAGAAGGUGACGAGGG&UCUUCGUUACCUUUU-CUUAAU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN62186_c0_g1_352_TPlot.pdf
TRINITY_DN62186_c0_g1:357	si_s804	TRINITY_DN62186_c0_g1	346	366	357	-27.90	-20.00	0.716845878136201	14	7-20,360-347	1-6,366-361[UP5];21-21,346-346[UP3]	.((((((((((((((......&......)))))))))))))).	AAGAAGGUGACGAGGGAACUG&UUUUAUCUUCGUUACCUUUUC	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN62186_c0_g1_357_TPlot.pdf
TRINITY_DN62186_c0_g1:358	si_s803	TRINITY_DN62186_c0_g1	347	367	358	-26.00	-20.00	0.769230769230769	15	8-21,360-347	1-7,367-361[UP5]	((((((((((((((.......&.......))))))))))))))	AGAAGGUGACGAGGGAACUGC&AUUUUAUCUUCGUUACCUUUU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN62186_c0_g1_358_TPlot.pdf
TRINITY_DN62186_c0_g1:421	si_s3	TRINITY_DN62186_c0_g1	410	430	421	-21.20	-13.80	0.650943396226415	13	5-18,426-413	1-4,430-427[UP5];19-21,412-410[UP3]	...((((((((((((((....&....))))))))))))))...	AUGGAUGAUGAGUAGUAGUUU&UUUAUAUUACUUAUUAUUACU	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN62186_c0_g1_421_TPlot.pdf
TRINITY_DN621_c0_g1:471	si_a308	TRINITY_DN621_c0_g1	459	479	471	-32.70	-21.30	0.651376146788991	7.5	1-7,479-473;9-12,472-469;15-21,465-459	8-8,x-x[BULq];13-14,468-466[AILt]	(((((((...((((-(((((((&))))))).))))-..)))))))	UAUGGAUUGUAUCC-AGCGAGU&AUUCGCUUGGAU-UUAUCCAUG	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN621_c0_g1_471_TPlot.pdf
TRINITY_DN621_c0_g1:746	si_a12	TRINITY_DN621_c0_g1	734	756	746	-26.80	-17.80	0.664179104477612	6.5	2-9,755-748;10-14,746-742;15-21,740-734	1-1,756-756[UP5];x-x,747-747[BULt];x-x,741-741[BULt]	(((((((.(((((.((((((((.&.))))))))-)))))-)))))))	AAAGUGAUGUAGGAUUUUCUCUG&AAGAGAAAG-CCUAU-UUAUUUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN621_c0_g1_746_TPlot.pdf
TRINITY_DN621_c0_g1:901	si_s79	TRINITY_DN621_c0_g1	890	910	901	-26.20	-17.50	0.66793893129771	8	3-11,908-900;13-19,898-892	1-2,910-909[UP5];12-12,899-899[SIL];20-21,891-890[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	UCGAAGAAAUGAAAGAAGAUU&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN621_c0_g1_901_TPlot.pdf
TRINITY_DN621_c0_g1:903	si_s77	TRINITY_DN621_c0_g1	892	912	903	-25.50	-17.20	0.674509803921569	9	5-13,908-900;15-21,898-892	1-4,912-909[UP5];14-14,899-899[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GAAGAAAUGAAAGAAGAUUCA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN621_c0_g1_903_TPlot.pdf
TRINITY_DN621_c0_g1:978	si_a756	TRINITY_DN621_c0_g1	967	988	978	-33.10	-22.10	0.667673716012085	8	1-8,988-981;10-16,978-972;19-21,969-967	9-9,980-979[AILt];17-18,971-970[SIL]	(((..(((((((..((((((((&))))))))-.)))))))..)))	AUCUUAAACUCAUUGGGAGGUU&AACCUCCU-UUGGGUUUUUGAU	3	0.999999948524549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN621_c0_g1_978_TPlot.pdf
TRINITY_DN62219_c0_g1:321	si_s7	TRINITY_DN62219_c0_g1	310	329	321	-21.70	-14.90	0.686635944700461	9	1-7,329-323;9-19,322-312	8-8,x-x[BULq];20-21,311-310[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	UGAUGGUGGUGAU-GGUGAUG&UAUUACUUAUUAUUACUAUAU	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN62219_c0_g1_321_TPlot.pdf
TRINITY_DN62226_c0_g1:332	si_s72	TRINITY_DN62226_c0_g1	319	341	332	-24.10	-16.10	0.66804979253112	9	3-16,339-326;17-19,323-321	1-2,341-340[UP5];x-x,325-324[BULt];20-21,320-319[UP3]	..(((..((((((((((((((..&..))))))))))))))--)))..	CCGGAAAAAGAAGAAGAAUAGCG&UUCUAUUUUUUUUCUU--UCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN62226_c0_g1_332_TPlot.pdf
TRINITY_DN6222_c0_g1:1275	si_s31	TRINITY_DN6222_c0_g1	1264	1284	1275	-24.80	-16.20	0.653225806451613	9.5	1-4,1284-1281;7-19,1278-1266	5-6,1280-1279[SIL];20-21,1265-1264[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	CAGUUAAGGAUUUGGAGGUAG&UUGCAACUAAAUCUUUAAUAA	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN6222_c0_g1_1275_TPlot.pdf
TRINITY_DN6222_c0_g1:1280	si_a848	TRINITY_DN6222_c0_g1	1269	1289	1280	-31.30	-23.30	0.744408945686901	6	1-8,1289-1282;10-12,1280-1278;14-19,1276-1271	9-9,1281-1281[SIL];13-13,1277-1277[SIL];20-21,1270-1269[UP3]	..((((((.(((.((((((((&)))))))).))).))))))..	AAGGAUUUGGAGGUAGCAACU&AGUUGCUAACUUGAAAUCCAA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN6222_c0_g1_1280_TPlot.pdf
TRINITY_DN6222_c0_g1:1282	si_a846	TRINITY_DN6222_c0_g1	1271	1291	1282	-32.50	-23.00	0.707692307692308	6.5	3-10,1289-1282;12-14,1280-1278;16-21,1276-1271	1-2,1291-1290[UP5];11-11,1281-1281[SIL];15-15,1277-1277[SIL]	((((((.(((.((((((((..&..)))))))).))).))))))	GGAUUUGGAGGUAGCAACUAU&GAAGUUGCUAACUUGAAAUCC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a846_TRINITY_DN6222_c0_g1_1282_TPlot.pdf
TRINITY_DN6222_c0_g1:1347	si_s894	TRINITY_DN6222_c0_g1	1336	1356	1347	-29.10	-20.10	0.690721649484536	11	4-17,1353-1340	1-3,1356-1354[UP5];18-21,1339-1336[UP3]	....((((((((((((((...&...))))))))))))))....	UAAAUGAAGAGGAAGUCUUAA&AAUAGGCUUUCUCUUCAAUUU	2	0.997809236631373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6222_c0_g1_1347_TPlot.pdf
TRINITY_DN6222_c0_g1:1348	si_s893	TRINITY_DN6222_c0_g1	1337	1357	1348	-29.10	-20.10	0.690721649484536	12	5-18,1353-1340	1-4,1357-1354[UP5];19-21,1339-1337[UP3]	...((((((((((((((....&....))))))))))))))...	AAAUGAAGAGGAAGUCUUAAG&AAAUAGGCUUUCUCUUCAAUU	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN6222_c0_g1_1348_TPlot.pdf
TRINITY_DN6222_c0_g1:1349	si_s892	TRINITY_DN6222_c0_g1	1338	1358	1349	-29.50	-20.10	0.68135593220339	13	6-19,1353-1340	1-5,1358-1354[UP5];20-21,1339-1338[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAUGAAGAGGAAGUCUUAAGU&UAAAUAGGCUUUCUCUUCAAU	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN6222_c0_g1_1349_TPlot.pdf
TRINITY_DN6222_c0_g1:1351	si_s890	TRINITY_DN6222_c0_g1	1340	1360	1351	-29.50	-19.90	0.674576271186441	14.5	8-21,1353-1340	1-7,1360-1354[UP5]	((((((((((((((.......&.......))))))))))))))	UGAAGAGGAAGUCUUAAGUUC&AAUAAAUAGGCUUUCUCUUCA	2	0.994829164283728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN6222_c0_g1_1351_TPlot.pdf
TRINITY_DN6222_c0_g1:1363	si_a406	TRINITY_DN6222_c0_g1	1352	1372	1363	-19.80	-13.10	0.661616161616162	5.5	1-12,1372-1361;15-20,1358-1353	13-14,1360-1359[SIL];21-21,1352-1352[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	CUUAAGUUCAAAUAAAGCAAU&AUUGUUUUGUUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6222_c0_g1_1363_TPlot.pdf
TRINITY_DN6222_c0_g1:1364	si_a405	TRINITY_DN6222_c0_g1	1353	1373	1364	-19.80	-13.00	0.656565656565657	5.5	2-13,1372-1361;16-21,1358-1353	1-1,1373-1373[UP5];14-15,1360-1359[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UUAAGUUCAAAUAAAGCAAUA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6222_c0_g1_1364_TPlot.pdf
TRINITY_DN6222_c0_g1:1633	si_a119	TRINITY_DN6222_c0_g1	1622	1642	1633	-30.30	-20.30	0.66996699669967	10.5	3-18,1640-1625	1-2,1642-1641[UP5];19-21,1624-1622[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUCUGCUGUAGAAUGGGCUAG&CGAGCUUGUUUUAUAGCAAUA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN6222_c0_g1_1633_TPlot.pdf
TRINITY_DN6222_c0_g1:2635	si_a794	TRINITY_DN6222_c0_g1	2624	2645	2635	-28.60	-19.20	0.671328671328671	10.5	1-8,2645-2638;10-18,2635-2627;20-20,2625-2625	9-9,2637-2636[AILt];19-19,2626-2626[SIL];21-21,2624-2624[UP3]	.(.(((((((((..((((((((&))))))))-.))))))))).).	AUGGGGUUGGAGUUAUGGAGGA&UUUUCUAU-UUUCCAAUCCGAA	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN6222_c0_g1_2635_TPlot.pdf
TRINITY_DN6222_c0_g1:2638	si_a792	TRINITY_DN6222_c0_g1	2626	2647	2638	-27.60	-19.30	0.699275362318841	12.5	3-10,2645-2638;12-20,2635-2627	1-2,2647-2646[UP5];11-11,2637-2636[AILt];21-21,2626-2626[UP3]	.(((((((((..((((((((..&..))))))))-.))))))))).	GGGGUUGGAGUUAUGGAGGAUA&AUUUUUCUAU-UUUCCAAUCCG	4	0.996280177389011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN6222_c0_g1_2638_TPlot.pdf
TRINITY_DN6222_c0_g1:506	si_a503	TRINITY_DN6222_c0_g1	495	515	506	-32.10	-22.00	0.685358255451713	13	7-20,509-496	1-6,515-510[UP5];21-21,495-495[UP3]	.((((((((((((((......&......)))))))))))))).	GAUUCCAAGGAAGAUUUGUCU&UUUUUCGUCUUCCUUGGAAUG	4	0.999961159251471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN6222_c0_g1_506_TPlot.pdf
TRINITY_DN62236_c0_g1:76	si_s485	TRINITY_DN62236_c0_g1	65	84	76	-18.10	-13.80	0.762430939226519	4.5	1-4,84-81;6-20,80-66	5-5,x-x[BULq];21-21,65-65[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	AUUGUAUUUAAAUAGA-AUAG&CUAUAUUUAUUUAAAUAUAAA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN62236_c0_g1_76_TPlot.pdf
TRINITY_DN6223_c1_g1:1234	si_a68	TRINITY_DN6223_c1_g1	1223	1246	1234	-25.40	-17.08	0.67244094488189	11	1-5,1246-1242;6-9,1240-1237;12-21,1232-1223	x-x,1241-1241[BULt];10-11,1236-1233[AILt]	((((((((((....((((.(((((&)))))-))))--..))))))))))	UGGAAGACAAGGCGUGAAUAGAAG&CUUCU-UUCA--AAUUGUUUUUCA	3	0.999999999941609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN6223_c1_g1_1234_TPlot.pdf
TRINITY_DN6224_c0_g2:227	si_s73	TRINITY_DN6224_c0_g2	217	233	227	-24.00	-15.80	0.658333333333333	8.5	1-7,233-227;12-21,226-217	8-11,x-x[BULq]	((((((((((----(((((((&)))))))....))))))))))	AAGGGAAAGA----AAAUAGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6224_c0_g2_227_TPlot.pdf
TRINITY_DN6224_c0_g2:229	si_s68	TRINITY_DN6224_c0_g2	218	238	229	-23.10	-15.20	0.658008658008658	10.5	6-21,233-218	1-5,238-234[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGGGAAAGAAAAUAGACGCGC&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6224_c0_g2_229_TPlot.pdf
TRINITY_DN62250_c0_g1:685	si_a758	TRINITY_DN62250_c0_g1	674	694	685	-34.00	-22.50	0.661764705882353	8	3-18,692-677	1-2,694-693[UP5];19-21,676-674[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUCUCAAGGACCUAAAGGAUU&CCUCCUUUGGGUUUUUGAUUG	4	0.999999874958037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN62250_c0_g1_685_TPlot.pdf
TRINITY_DN6225_c0_g1:1157	si_a57	TRINITY_DN6225_c0_g1	1146	1164	1157	-36.60	-25.80	0.704918032786885	7.5	1-6,1164-1159;9-19,1158-1148	7-8,x-x[BULq];20-21,1147-1146[UP3]	..(((((((((((--((((((&))))))..)))))))))))..	ACGAAAGGAGCGA--CGGCUC&GAGUCGACUCGCUUCUUUCAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN6225_c0_g1_1157_TPlot.pdf
TRINITY_DN6225_c0_g1:1158	si_a56	TRINITY_DN6225_c0_g1	1147	1165	1158	-38.90	-26.00	0.668380462724936	7.5	2-7,1164-1159;10-20,1158-1148	1-1,1165-1165[UP5];8-9,x-x[BULq];21-21,1147-1147[UP3]	.(((((((((((--((((((.&.))))))..))))))))))).	CGAAAGGAGCGA--CGGCUCG&GGAGUCGACUCGCUUCUUUCA	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN6225_c0_g1_1158_TPlot.pdf
TRINITY_DN6225_c0_g1:1286	si_s248	TRINITY_DN6225_c0_g1	1275	1295	1286	-31.90	-23.50	0.736677115987461	9	3-3,1293-1293;5-18,1291-1278	1-2,1295-1294[UP5];4-4,1292-1292[SIL];19-21,1277-1275[UP3]	...((((((((((((((.(..&..).))))))))))))))...	AUCUGUGUCGGGAAAUGGCGC&UAGGCAUUUCCCGAUAUAUUA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN6225_c0_g1_1286_TPlot.pdf
TRINITY_DN6225_c0_g1:1287	si_s247	TRINITY_DN6225_c0_g1	1276	1296	1287	-31.70	-23.50	0.741324921135647	10	4-4,1293-1293;6-19,1291-1278	1-3,1296-1294[UP5];5-5,1292-1292[SIL];20-21,1277-1276[UP3]	..((((((((((((((.(...&...).))))))))))))))..	UCUGUGUCGGGAAAUGGCGCU&AUAGGCAUUUCCCGAUAUAUU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN6225_c0_g1_1287_TPlot.pdf
TRINITY_DN6225_c0_g1:1288	si_s246	TRINITY_DN6225_c0_g1	1277	1297	1288	-31.70	-23.50	0.741324921135647	11	5-5,1293-1293;7-20,1291-1278	1-4,1297-1294[UP5];6-6,1292-1292[SIL];21-21,1277-1277[UP3]	.((((((((((((((.(....&....).)))))))))))))).	CUGUGUCGGGAAAUGGCGCUU&AAUAGGCAUUUCCCGAUAUAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN6225_c0_g1_1288_TPlot.pdf
TRINITY_DN6225_c0_g1:1289	si_s245	TRINITY_DN6225_c0_g1	1278	1298	1289	-33.20	-24.70	0.743975903614458	7	1-3,1298-1296;6-6,1293-1293;8-21,1291-1278	4-5,1295-1294[SIL];7-7,1292-1292[SIL]	((((((((((((((.(..(((&)))..).))))))))))))))	UGUGUCGGGAAAUGGCGCUUG&CAAUAGGCAUUUCCCGAUAUA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN6225_c0_g1_1289_TPlot.pdf
TRINITY_DN6225_c0_g1:1291	si_s243	TRINITY_DN6225_c0_g1	1280	1300	1291	-33.80	-23.80	0.70414201183432	7.5	2-5,1299-1296;8-8,1293-1293;10-21,1291-1280	1-1,1300-1300[UP5];6-7,1295-1294[SIL];9-9,1292-1292[SIL]	((((((((((((.(..((((.&.))))..).))))))))))))	UGUCGGGAAAUGGCGCUUGAA&AUCAAUAGGCAUUUCCCGAUA	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s243_TRINITY_DN6225_c0_g1_1291_TPlot.pdf
TRINITY_DN6225_c0_g1:1977	si_a633	TRINITY_DN6225_c0_g1	1966	1986	1977	-26.40	-17.20	0.651515151515151	6.5	1-4,1986-1983;6-20,1981-1967	5-5,1982-1982[SIL];21-21,1966-1966[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	GACUUGAAAAAAUUGAGAUGG&UUAUGUCGAUUUUUUUGAGUA	3	0.999999999999645	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN6225_c0_g1_1977_TPlot.pdf
TRINITY_DN6225_c0_g1:2000	si_a66	TRINITY_DN6225_c0_g1	1989	2010	2000	-26.70	-21.10	0.790262172284644	7	1-6,2010-2005;7-20,2003-1990	x-x,2004-2004[BULt];21-21,1989-1989[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	UGAGAUGAUUUGAGACGAGGCG&CGCUUC-UUUCAAAUUGUUUUU	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN6225_c0_g1_2000_TPlot.pdf
TRINITY_DN6225_c0_g1:2003	si_a63	TRINITY_DN6225_c0_g1	1992	2013	2003	-30.20	-21.00	0.695364238410596	8.5	3-9,2011-2005;10-21,2003-1992	1-2,2013-2012[UP5];x-x,2004-2004[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GAUGAUUUGAGACGAGGCGAAA&ACUCGCUUC-UUUCAAAUUGUU	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN6225_c0_g1_2003_TPlot.pdf
TRINITY_DN6225_c0_g1:2417	si_a501	TRINITY_DN6225_c0_g1	2406	2426	2417	-33.50	-22.10	0.659701492537313	8.5	3-15,2424-2412;17-20,2410-2407	1-2,2426-2425[UP5];16-16,2411-2411[SIL];21-21,2406-2406[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	GUCUAUGGAAGACGGGAGAGU&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999991114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN6225_c0_g1_2417_TPlot.pdf
TRINITY_DN6225_c0_g1:2423	si_s78	TRINITY_DN6225_c0_g1	2412	2432	2423	-26.20	-19.00	0.725190839694656	9	1-5,2432-2428;8-14,2425-2419;16-21,2417-2412	6-7,2427-2426[SIL];15-15,2418-2418[SIL]	((((((.(((((((..(((((&)))))..))))))).))))))	GGAAGACGGGAGAGUCGAGAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6225_c0_g1_2423_TPlot.pdf
TRINITY_DN6225_c0_g1:2476	si_a769	TRINITY_DN6225_c0_g1	2465	2485	2476	-26.70	-18.10	0.677902621722847	14.5	8-21,2478-2465	1-7,2485-2479[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAGUUGGAUCGAAGUUACA&UUUUUGAUUGAUUCAACUCUU	4	0.996910853773391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN6225_c0_g1_2476_TPlot.pdf
TRINITY_DN6225_c0_g1:4105	si_a820	TRINITY_DN6225_c0_g1	4094	4115	4105	-28.20	-18.70	0.663120567375887	6.5	1-8,4115-4108;9-18,4106-4097	x-x,4107-4107[BULt];19-21,4096-4094[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	CGAUUCUUUCCUUCUCUUUUUU&GAAGAAGA-AAGGAAAGAAAAA	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN6225_c0_g1_4105_TPlot.pdf
TRINITY_DN6225_c0_g1:4482	si_s899	TRINITY_DN6225_c0_g1	4471	4491	4482	-28.30	-19.40	0.685512367491166	10	1-13,4491-4479	14-21,4478-4471[UP3]	........(((((((((((((&)))))))))))))........	GGCAUUUCUUGAAGGGAGAGC&GCUUUCUCUUCAAUUUCAAUU	2	0.999311501258161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN6225_c0_g1_4482_TPlot.pdf
TRINITY_DN6225_c0_g1:4487	si_s894	TRINITY_DN6225_c0_g1	4476	4496	4487	-29.10	-19.40	0.666666666666667	14	6-18,4491-4479	1-5,4496-4492[UP5];19-21,4478-4476[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUCUUGAAGGGAGAGCAUCUG&AAUAGGCUUUCUCUUCAAUUU	4	0.999999945240273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6225_c0_g1_4487_TPlot.pdf
TRINITY_DN6225_c0_g1:4489	si_s892	TRINITY_DN6225_c0_g1	4478	4498	4489	-29.50	-19.40	0.657627118644068	15.5	8-20,4491-4479	1-7,4498-4492[UP5];21-21,4478-4478[UP3]	.(((((((((((((.......&.......))))))))))))).	CUUGAAGGGAGAGCAUCUGCU&UAAAUAGGCUUUCUCUUCAAU	2	0.999845379205724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN6225_c0_g1_4489_TPlot.pdf
TRINITY_DN6225_c0_g1:4490	si_s891	TRINITY_DN6225_c0_g1	4479	4499	4490	-29.60	-19.30	0.652027027027027	16.5	9-21,4491-4479	1-8,4499-4492[UP5]	(((((((((((((........&........)))))))))))))	UUGAAGGGAGAGCAUCUGCUG&AUAAAUAGGCUUUCUCUUCAA	2	0.999839496768338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN6225_c0_g1_4490_TPlot.pdf
TRINITY_DN6225_c0_g1:4554	si_a758	TRINITY_DN6225_c0_g1	4538	4563	4554	-34.00	-22.40	0.658823529411765	10	1-11,4563-4553;12-17,4551-4546;18-21,4541-4538	x-x,4552-4552[BULt];x-x,4545-4542[BULt]	((((....((((((.(((((((((((&)))))))))))-))))))----))))	CAGUUGGACGAGGAGUCCAAGGGAGG&CCUCCUUUGGG-UUUUUG----AUUG	2	0.999961159904183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6225_c0_g1_4554_TPlot.pdf
TRINITY_DN6225_c0_g1:4555	si_a757	TRINITY_DN6225_c0_g1	4543	4564	4555	-33.10	-22.40	0.676737160120846	9.5	2-12,4563-4553;13-18,4551-4546	1-1,4564-4564[UP5];x-x,4552-4552[BULt];19-21,4545-4543[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	GGACGAGGAGUCCAAGGGAGGA&ACCUCCUUUGGG-UUUUUGAUU	2	0.999763926147321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6225_c0_g1_4555_TPlot.pdf
TRINITY_DN6225_c0_g1:4556	si_a756	TRINITY_DN6225_c0_g1	4544	4565	4556	-33.10	-22.40	0.676737160120846	9	3-13,4563-4553;14-19,4551-4546	1-2,4565-4564[UP5];x-x,4552-4552[BULt];20-21,4545-4544[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	GACGAGGAGUCCAAGGGAGGAG&AACCUCCUUUGGG-UUUUUGAU	2	0.999766846148548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN6225_c0_g1_4556_TPlot.pdf
TRINITY_DN6225_c0_g1:4558	si_s81	TRINITY_DN6225_c0_g1	4543	4567	4558	-28.90	-18.80	0.650519031141869	14	1-12,4567-4556;13-17,4551-4547;19-21,4545-4543	x-x,4555-4552[BULt];18-18,4546-4546[SIL]	(((.(((((....((((((((((((&))))))))))))----))))).)))	GGACGAGGAGUCCAAGGGAGGAGGA&UUUUCUUUCCUU----UCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6225_c0_g1_4558_TPlot.pdf
TRINITY_DN6225_c0_g1:4559	si_s41	TRINITY_DN6225_c0_g1	4548	4568	4559	-25.00	-16.54	0.6616	14	1-6,4568-4563;12-20,4557-4549	7-11,4562-4558[SIL];21-21,4548-4548[UP3]	.(((((((((.....((((((&)))))).....))))))))).	AGGAGUCCAAGGGAGGAGGAU&AUCUUUAAUAAUUGGAUUUCA	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN6225_c0_g1_4559_TPlot.pdf
TRINITY_DN6225_c0_g1:4560	si_s40	TRINITY_DN6225_c0_g1	4549	4569	4560	-24.30	-16.24	0.668312757201646	14	2-7,4568-4563;13-21,4557-4549	1-1,4569-4569[UP5];8-12,4562-4558[SIL]	(((((((((.....((((((.&.)))))).....)))))))))	GGAGUCCAAGGGAGGAGGAUA&AAUCUUUAAUAAUUGGAUUUC	2	0.983951203433408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN6225_c0_g1_4560_TPlot.pdf
TRINITY_DN6225_c0_g1:4561	si_s78	TRINITY_DN6225_c0_g1	4546	4570	4561	-26.20	-17.10	0.652671755725191	14.5	4-15,4567-4556;16-20,4551-4547	1-3,4570-4568[UP5];x-x,4555-4552[BULt];21-21,4546-4546[UP3]	.(((((....((((((((((((...&...))))))))))))----))))).	CGAGGAGUCCAAGGGAGGAGGAUAU&UUUUUUUCUUUCCUU----UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6225_c0_g1_4561_TPlot.pdf
TRINITY_DN6225_c0_g1:4562	si_s77	TRINITY_DN6225_c0_g1	4547	4571	4562	-25.50	-16.80	0.658823529411765	15.5	5-16,4567-4556;17-21,4551-4547	1-4,4571-4568[UP5];x-x,4555-4552[BULt]	(((((....((((((((((((....&....))))))))))))----)))))	GAGGAGUCCAAGGGAGGAGGAUAUG&UUUUUUUUCUUUCCUU----UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6225_c0_g1_4562_TPlot.pdf
TRINITY_DN6225_c0_g1:909	si_a393	TRINITY_DN6225_c0_g1	898	917	909	-22.70	-15.30	0.674008810572687	7	1-7,917-911;9-18,910-901	8-8,x-x[BULq];19-21,900-898[UP3]	...((((((((((-(((((((&))))))).))))))))))...	CUUGCAAUUCUAU-UUCUUGG&UUAAGAAUAUAGAAUUGUUUU	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN6225_c0_g1_909_TPlot.pdf
TRINITY_DN6225_c0_g1:911	si_a391	TRINITY_DN6225_c0_g1	900	919	911	-22.80	-15.30	0.671052631578947	8.5	3-9,917-911;11-20,910-901	1-2,919-918[UP5];10-10,x-x[BULq];21-21,900-900[UP3]	.((((((((((-(((((((..&..))))))).)))))))))).	UGCAAUUCUAU-UUCUUGGGA&AAUUAAGAAUAUAGAAUUGUU	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN6225_c0_g1_911_TPlot.pdf
TRINITY_DN6226_c0_g2:1881	si_a836	TRINITY_DN6226_c0_g2	1870	1889	1881	-24.10	-16.40	0.680497925311203	9.5	5-9,1885-1881;11-21,1880-1870	1-4,1889-1886[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	UUAGCGACUUC-AUUUUCACC&AAAAAAAAUAGAAGUUGCUAA	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN6226_c0_g2_1881_TPlot.pdf
TRINITY_DN6226_c0_g3:434	si_s78	TRINITY_DN6226_c0_g3	423	443	434	-26.20	-17.80	0.679389312977099	6	1-11,443-433;14-21,430-423	12-13,432-431[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AGAAGAAAAAGAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6226_c0_g3_434_TPlot.pdf
TRINITY_DN6226_c0_g3:704	si_a75	TRINITY_DN6226_c0_g3	693	718	704	-21.30	-15.10	0.708920187793427	16.5	1-9,718-710;10-19,704-695	x-x,709-705[BULt];20-21,694-693[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	UAGAUGGUGGAGUAGAUGACAAUUUG&CAAAUUGUU-----UUUCAUUAUUAA	2	0.998853114148591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN6226_c0_g3_704_TPlot.pdf
TRINITY_DN6226_c0_g3:710	si_a74	TRINITY_DN6226_c0_g3	694	719	710	-22.20	-15.20	0.684684684684685	16	2-10,718-710;11-20,704-695	1-1,719-719[UP5];x-x,709-705[BULt];21-21,694-694[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	AGAUGGUGGAGUAGAUGACAAUUUGG&UCAAAUUGUU-----UUUCAUUAUUA	4	0.99999967008328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN6226_c0_g3_710_TPlot.pdf
TRINITY_DN6226_c0_g3:711	si_a73	TRINITY_DN6226_c0_g3	695	720	711	-21.90	-16.10	0.735159817351598	15	1-11,720-710;12-21,704-695	x-x,709-705[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	GAUGGUGGAGUAGAUGACAAUUUGGA&UUCAAAUUGUU-----UUUCAUUAUU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6226_c0_g3_711_TPlot.pdf
TRINITY_DN6226_c0_g3:712	si_a72	TRINITY_DN6226_c0_g3	696	721	712	-21.90	-15.20	0.694063926940639	15	2-12,720-710;13-21,704-696	1-1,721-721[UP5];x-x,709-705[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	AUGGUGGAGUAGAUGACAAUUUGGAU&UUUCAAAUUGUU-----UUUCAUUAU	4	0.999999928384918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN6226_c0_g3_712_TPlot.pdf
TRINITY_DN6227_c0_g1:1522	si_a756	TRINITY_DN6227_c0_g1	1511	1531	1522	-33.10	-21.70	0.655589123867069	10	3-16,1529-1516;18-19,1514-1513	1-2,1531-1530[UP5];17-17,1515-1515[SIL];20-21,1512-1511[UP3]	..((.((((((((((((((..&..)))))))))))))).))..	GGCAUAGGCUUAGAGGAGGGA&AACCUCCUUUGGGUUUUUGAU	4	0.999999999710675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN6227_c0_g1_1522_TPlot.pdf
TRINITY_DN6227_c0_g1:1636	si_a407	TRINITY_DN6227_c0_g1	1624	1645	1636	-19.80	-13.00	0.656565656565657	7	1-15,1645-1631;17-20,1628-1625	16-16,1630-1629[AILt];21-21,1624-1624[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	UUUUACUAUAUAGGCAAGAUAA&UUGUUUUGUUUAUAU-UUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN6227_c0_g1_1636_TPlot.pdf
TRINITY_DN6227_c0_g1:1638	si_a405	TRINITY_DN6227_c0_g1	1627	1647	1638	-19.80	-13.80	0.696969696969697	9	2-17,1646-1631	1-1,1647-1647[UP5];18-21,1630-1627[UP3]	....((((((((((((((((.&.))))))))))))))))....	UACUAUAUAGGCAAGAUAAUC&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999999913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6227_c0_g1_1638_TPlot.pdf
TRINITY_DN6227_c0_g1:1640	si_a403	TRINITY_DN6227_c0_g1	1629	1648	1640	-22.00	-14.60	0.663636363636364	7	1-3,1648-1646;5-19,1645-1631	4-4,x-x[BULq];20-21,1630-1629[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	CUAUAUAGGCAAGAUAA-UCU&AGAAUUGUUUUGUUUAUAUUU	2	0.999999992004052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6227_c0_g1_1640_TPlot.pdf
TRINITY_DN6227_c0_g1:1641	si_a402	TRINITY_DN6227_c0_g1	1630	1649	1641	-22.40	-15.90	0.709821428571429	6	1-4,1649-1646;6-20,1645-1631	5-5,x-x[BULq];21-21,1630-1630[UP3]	.(((((((((((((((-((((&)))).))))))))))))))).	UAUAUAGGCAAGAUAA-UCUA&UAGAAUUGUUUUGUUUAUAUU	2	0.996527907076729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN6227_c0_g1_1641_TPlot.pdf
TRINITY_DN6227_c0_g1:1642	si_a401	TRINITY_DN6227_c0_g1	1631	1650	1642	-22.60	-15.90	0.70353982300885	6	2-5,1649-1646;7-21,1645-1631	1-1,1650-1650[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AUAUAGGCAAGAUAA-UCUAG&AUAGAAUUGUUUUGUUUAUAU	2	0.995968609530716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN6227_c0_g1_1642_TPlot.pdf
TRINITY_DN6227_c0_g1:1643	si_a400	TRINITY_DN6227_c0_g1	1632	1651	1643	-22.80	-14.90	0.653508771929825	8	3-6,1649-1646;8-21,1645-1632	1-2,1651-1650[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	UAUAGGCAAGAUAA-UCUAGA&UAUAGAAUUGUUUUGUUUAUA	2	0.999999801648386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN6227_c0_g1_1643_TPlot.pdf
TRINITY_DN622_c0_g1:171	si_a620	TRINITY_DN622_c0_g1	156	180	171	-36.40	-24.12	0.662637362637363	13	1-10,180-171;11-14,167-164;18-21,159-156	x-x,170-168[BULt];15-17,163-160[AILt]	((((....((((...((((((((((&))))))))))---))))-...))))	CGGCUGGUGUGCCCGGCCUGGUCGA&UCGACUAGGC---GUAU-UAUGUCG	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a620_TRINITY_DN622_c0_g1_171_TPlot.pdf
TRINITY_DN622_c0_g1:4993	si_s79	TRINITY_DN622_c0_g1	4981	5002	4993	-26.20	-17.70	0.675572519083969	8	1-11,5002-4992;14-21,4988-4981	12-13,4991-4989[AILt]	((((((((...(((((((((((&)))))))))))-..))))))))	GAGAAGAGCAAGAAGGAAAAGA&UUUUUUCUUUC-CUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN622_c0_g1_4993_TPlot.pdf
TRINITY_DN622_c0_g1:5145	si_a576	TRINITY_DN622_c0_g1	5134	5154	5145	-28.70	-20.40	0.710801393728223	9	3-17,5152-5138	1-2,5154-5153[UP5];18-21,5137-5134[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAACUGUUACAAACGUGCGCU&AUCGUAUGUUUGUAACAAGAA	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a576_TRINITY_DN622_c0_g1_5145_TPlot.pdf
TRINITY_DN622_c0_g3:227	si_a500	TRINITY_DN622_c0_g3	216	235	227	-34.40	-26.20	0.761627906976744	4.5	1-2,235-234;4-21,233-216	3-3,x-x[BULq]	((((((((((((((((((-((&)).))))))))))))))))))	UCUGAGGAGGACGAAGAA-GA&UCGUUUUUCGUCUUCCUUGGA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN622_c0_g3_227_TPlot.pdf
TRINITY_DN6231_c0_g1:2466	si_a564	TRINITY_DN6231_c0_g1	2455	2475	2466	-37.60	-25.70	0.683510638297872	5.5	2-11,2474-2465;13-17,2463-2459;19-20,2457-2456	1-1,2475-2475[UP5];12-12,2464-2464[SIL];18-18,2458-2458[SIL];21-21,2455-2455[UP3]	.((.(((((.((((((((((.&.)))))))))).))))).)).	UCAGAUGAUCCACGGGGAGAA&AUCUCCCCGUGAAUCGUAUGU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a564_TRINITY_DN6231_c0_g1_2466_TPlot.pdf
TRINITY_DN6233_c0_g1:1841	si_s312	TRINITY_DN6233_c0_g1	1830	1849	1841	-29.00	-19.40	0.668965517241379	12.5	5-9,1845-1841;11-20,1840-1831	1-4,1849-1846[UP5];10-10,x-x[BULq];21-21,1830-1830[UP3]	.((((((((((-(((((....&....))))).)))))))))).	AGGCAAGGAGG-CGGAAAAGA&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999786684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN6233_c0_g1_1841_TPlot.pdf
TRINITY_DN6233_c0_g1:1843	si_s75	TRINITY_DN6233_c0_g1	1830	1852	1843	-24.00	-15.70	0.654166666666667	7.5	1-11,1852-1842;12-18,1840-1834;19-21,1832-1830	x-x,1841-1841[BULt];x-x,1833-1833[BULt]	(((.(((((((.(((((((((((&)))))))))))-)))))))-)))	AGGCAAGGAGGCGGAAAAGAAUG&UAUUUUUUUUC-UUUCCUU-UCU	0	0.934099856730525	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6233_c0_g1_1843_TPlot.pdf
TRINITY_DN6233_c0_g1:1844	si_s74	TRINITY_DN6233_c0_g1	1832	1853	1844	-25.00	-17.70	0.708	8	1-12,1853-1842;13-19,1840-1834	x-x,1841-1841[BULt];20-21,1833-1832[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	GCAAGGAGGCGGAAAAGAAUGG&CUAUUUUUUUUC-UUUCCUUUC	3	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6233_c0_g1_1844_TPlot.pdf
TRINITY_DN6233_c0_g1:1845	si_s73	TRINITY_DN6233_c0_g1	1833	1854	1845	-24.00	-19.30	0.804166666666667	6	1-13,1854-1842;14-20,1840-1834	x-x,1841-1841[BULt];21-21,1833-1833[UP3]	.(((((((.(((((((((((((&)))))))))))))-))))))).	CAAGGAGGCGGAAAAGAAUGGA&UCUAUUUUUUUUC-UUUCCUUU	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6233_c0_g1_1845_TPlot.pdf
TRINITY_DN6233_c0_g1:1848	si_s70	TRINITY_DN6233_c0_g1	1836	1857	1848	-25.80	-18.00	0.697674418604651	8.5	3-16,1855-1842;17-21,1840-1836	1-2,1857-1856[UP5];x-x,1841-1841[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GGAGGCGGAAAAGAAUGGAGAG&ACUUCUAUUUUUUUUC-UUUCC	2	0.999999987007988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6233_c0_g1_1848_TPlot.pdf
TRINITY_DN6235_c0_g1:738	si_s414	TRINITY_DN6235_c0_g1	727	747	738	-24.90	-17.10	0.686746987951807	11.5	5-10,743-738;12-20,736-728	1-4,747-744[UP5];11-11,737-737[SIL];21-21,727-727[UP3]	.(((((((((.((((((....&....)))))).))))))))).	AUAUAUGGAAGGUGUCGAUAA&AAAACGACAUAUUCUAUAUAA	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN6235_c0_g1_738_TPlot.pdf
TRINITY_DN62361_c0_g1:39	si_a461	TRINITY_DN62361_c0_g1	28	48	39	-21.50	-14.60	0.67906976744186	8	1-8,48-41;10-17,39-32	9-9,40-40[SIL];18-21,31-28[UP3]	....((((((((.((((((((&)))))))).))))))))....	AGGAACAUAUUGAAUAUGACA&UGUUAUAUAUAAUAUGUAAUU	0	0.132017790001132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN62361_c0_g1_39_TPlot.pdf
TRINITY_DN62361_c0_g1:43	si_a480	TRINITY_DN62361_c0_g1	32	52	43	-23.70	-15.70	0.662447257383966	7	3-12,50-41;15-21,38-32	1-2,52-51[UP5];13-14,40-39[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	ACAUAUUGAAUAUGACAGUCA&UUAUUGUUAUAUAGAAUAUGU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN62361_c0_g1_43_TPlot.pdf
TRINITY_DN6236_c0_g1:3728	si_s894	TRINITY_DN6236_c0_g1	3717	3737	3728	-29.10	-19.50	0.670103092783505	10.5	4-20,3734-3718	1-3,3737-3735[UP5];21-21,3717-3717[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAGUUGAAGGGAAGGUUUUGA&AAUAGGCUUUCUCUUCAAUUU	2	0.999909460046264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN6236_c0_g1_3728_TPlot.pdf
TRINITY_DN6237_c2_g3:28	si_s388	TRINITY_DN6237_c2_g3	17	39	28	-37.80	-25.10	0.664021164021164	9.5	1-5,39-35;6-9,33-30;11-20,27-18	x-x,34-34[BULt];10-10,29-28[AILt];21-21,17-17[UP3]	.((((((((((..((((.(((((&)))))-))))-.)))))))))).	AUCCUUGGGGUCCUAGGAGCGGA&UCCGC-CUUA-CAUUCCAAGGAA	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s388_TRINITY_DN6237_c2_g3_28_TPlot.pdf
TRINITY_DN6237_c2_g3:30	si_s387	TRINITY_DN6237_c2_g3	18	40	30	-39.50	-28.00	0.708860759493671	8	1-6,40-35;7-10,33-30;12-21,27-18	x-x,34-34[BULt];11-11,29-28[AILt]	((((((((((..((((.((((((&))))))-))))-.))))))))))	UCCUUGGGGUCCUAGGAGCGGAC&GUCCGC-CUUA-CAUUCCAAGGA	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s387_TRINITY_DN6237_c2_g3_30_TPlot.pdf
TRINITY_DN6237_c2_g3:31	si_s386	TRINITY_DN6237_c2_g3	19	41	31	-39.20	-26.20	0.668367346938775	9	2-7,40-35;8-11,33-30;13-21,27-19	1-1,41-41[UP5];x-x,34-34[BULt];12-12,29-28[AILt]	(((((((((..((((.((((((.&.))))))-))))-.)))))))))	CCUUGGGGUCCUAGGAGCGGACU&UGUCCGC-CUUA-CAUUCCAAGG	1	0.0122442154327587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s386_TRINITY_DN6237_c2_g3_31_TPlot.pdf
TRINITY_DN6237_c4_g1:57	si_a632	TRINITY_DN6237_c4_g1	46	67	57	-26.10	-17.40	0.666666666666667	11	1-9,67-59;10-20,57-47	x-x,58-58[BULt];21-21,46-46[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	CCUCGGAGGGGUGUGGCAUGGU&AUUAUGUCG-AUUUUUUUGAGU	4	0.999999990721386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN6237_c4_g1_57_TPlot.pdf
TRINITY_DN6238_c0_g1:3989	si_a548	TRINITY_DN6238_c0_g1	3975	3998	3989	-27.20	-17.90	0.658088235294118	7	1-11,3998-3988;13-17,3987-3983;18-21,3978-3975	12-12,x-x[BULq];x-x,3982-3979[BULt]	((((....(((((-(((((((((((&))))))))))).)))))----))))	GAGACUUUUGAAG-AAUAGAUUGAG&UUCAAUCUAUUUCUUUA----UCUC	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN6238_c0_g1_3989_TPlot.pdf
TRINITY_DN62390_c0_g1:104	si_a789	TRINITY_DN62390_c0_g1	93	113	104	-24.80	-18.70	0.754032258064516	5	1-9,113-105;11-21,103-93	10-10,104-104[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AUUGGGGAAUAUAAGAAUGGA&UCUAUUUUUCUAUUUUCCAAU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN62390_c0_g1_104_TPlot.pdf
TRINITY_DN62390_c0_g1:184	si_s528	TRINITY_DN62390_c0_g1	172	196	184	-29.40	-19.60	0.666666666666667	10	1-5,196-192;6-15,188-179;16-20,177-173	x-x,191-189[BULt];x-x,178-178[BULt];21-21,172-172[UP3]	.(((((.((((((((((...(((((&)))))---))))))))))-))))).	AGGAUCUGGAGAUGAUUUGGUCGAA&UUCGA---AAUCAUUUUU-GAUCCG	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN62390_c0_g1_184_TPlot.pdf
TRINITY_DN623_c0_g1:2070	si_a450	TRINITY_DN623_c0_g1	2059	2081	2070	-25.20	-17.50	0.694444444444444	9.5	1-8,2081-2074;9-19,2071-2061	x-x,2073-2072[BULt];20-21,2060-2059[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	UGGUAUAACGGCAAUAUUAUUUC&GAGAUAAU--UGUUGUUAUAUAU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN623_c0_g1_2070_TPlot.pdf
TRINITY_DN623_c0_g1:2071	si_a449	TRINITY_DN623_c0_g1	2060	2082	2071	-25.70	-17.60	0.684824902723736	9	2-9,2081-2074;10-20,2071-2061	1-1,2082-2082[UP5];x-x,2073-2072[BULt];21-21,2060-2060[UP3]	.(((((((((((..((((((((.&.))))))))--))))))))))).	GGUAUAACGGCAAUAUUAUUUCG&UGAGAUAAU--UGUUGUUAUAUA	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN623_c0_g1_2071_TPlot.pdf
TRINITY_DN623_c0_g1:2074	si_a448	TRINITY_DN623_c0_g1	2061	2083	2074	-25.50	-17.20	0.674509803921569	9.5	3-10,2081-2074;11-21,2071-2061	1-2,2083-2082[UP5];x-x,2073-2072[BULt]	(((((((((((..((((((((..&..))))))))--)))))))))))	GUAUAACGGCAAUAUUAUUUCGG&AUGAGAUAAU--UGUUGUUAUAU	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN623_c0_g1_2074_TPlot.pdf
TRINITY_DN623_c0_g1:467	si_s67	TRINITY_DN623_c0_g1	456	481	467	-25.60	-18.00	0.703125	14.5	2-6,480-476;7-21,470-456	1-1,481-481[UP5];x-x,475-471[BULt]	(((((((((((((((.....(((((.&.)))))-----)))))))))))))))	GGGAAAGAAAGUAGACGCCUGGUUGG&GCAACU-----UCUAUUUUUUUUCUU	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN623_c0_g1_467_TPlot.pdf
TRINITY_DN6240_c0_g4:1379	si_a14	TRINITY_DN6240_c0_g4	1368	1387	1379	-26.50	-17.40	0.656603773584906	8	1-5,1387-1383;7-15,1382-1374	6-6,x-x[BULq];16-21,1373-1368[UP3]	......(((((((((-(((((&))))).)))))))))......	AUAUCCUAAAUAGGC-UUCUC&GAGAAAGCCUAUUUAUUUUUA	3	0.999418407699461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a14_TRINITY_DN6240_c0_g4_1379_TPlot.pdf
TRINITY_DN6240_c0_g4:1380	si_a13	TRINITY_DN6240_c0_g4	1369	1388	1380	-26.80	-17.60	0.656716417910448	8	2-6,1387-1383;8-16,1382-1374	1-1,1388-1388[UP5];7-7,x-x[BULq];17-21,1373-1369[UP3]	.....(((((((((-(((((.&.))))).))))))))).....	UAUCCUAAAUAGGC-UUCUCC&AGAGAAAGCCUAUUUAUUUUU	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN6240_c0_g4_1380_TPlot.pdf
TRINITY_DN6240_c0_g4:1836	si_a683	TRINITY_DN6240_c0_g4	1823	1845	1836	-35.80	-24.00	0.670391061452514	7.5	1-8,1845-1838;10-12,1836-1834;13-21,1831-1823	9-9,1837-1837[SIL];x-x,1833-1832[BULt]	(((((((((..(((.((((((((&)))))))).)))--)))))))))	UGUGUUUGAAGAACGGUGUGAAU&AUUCACGCGGUU--UCGAACACA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN6240_c0_g4_1836_TPlot.pdf
TRINITY_DN6240_c0_g6:1378	si_a14	TRINITY_DN6240_c0_g6	1367	1386	1378	-26.50	-17.40	0.656603773584906	8	1-5,1386-1382;7-15,1381-1373	6-6,x-x[BULq];16-21,1372-1367[UP3]	......(((((((((-(((((&))))).)))))))))......	AUAUCCUAAAUAGGC-UUCUC&GAGAAAGCCUAUUUAUUUUUA	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a14_TRINITY_DN6240_c0_g6_1378_TPlot.pdf
TRINITY_DN6240_c0_g6:1835	si_a683	TRINITY_DN6240_c0_g6	1822	1844	1835	-35.80	-24.00	0.670391061452514	7.5	1-8,1844-1837;10-12,1835-1833;13-21,1830-1822	9-9,1836-1836[SIL];x-x,1832-1831[BULt]	(((((((((..(((.((((((((&)))))))).)))--)))))))))	UGUGUUUGAAGAACGGUGUGAAU&AUUCACGCGGUU--UCGAACACA	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN6240_c0_g6_1835_TPlot.pdf
TRINITY_DN62417_c0_g1:242	si_a786	TRINITY_DN62417_c0_g1	230	252	242	-26.60	-19.40	0.729323308270677	5	1-6,252-247;8-16,244-236;17-21,234-230	7-7,246-245[AILt];x-x,235-235[BULt]	(((((.(((((((((..((((((&))))))-.)))))))))-)))))	GGAAAUAUAGAAAAAGAAGAAGA&UCUUCU-AUUUUUCUAU-UUUCC	1	0.0866843040239904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN62417_c0_g1_242_TPlot.pdf
TRINITY_DN6241_c2_g1:54	si_s673	TRINITY_DN6241_c2_g1	41	63	54	-26.80	-18.70	0.697761194029851	6.5	1-16,63-48;17-21,45-41	x-x,47-46[BULt]	(((((..((((((((((((((((&))))))))))))))))--)))))	CUUAUGAGUUUCUGUGAUUAGUU&AAUUGAUUAUAGAAAC--AUGAG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s673_TRINITY_DN6241_c2_g1_54_TPlot.pdf
TRINITY_DN6241_c2_g1:56	si_s671	TRINITY_DN6241_c2_g1	45	65	56	-27.60	-22.80	0.826086956521739	7	1-18,65-48	19-21,47-45[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGAGUUUCUGUGAUUAGUUCG&CGAAUUGAUUAUAGAAACAUG	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s671_TRINITY_DN6241_c2_g1_56_TPlot.pdf
TRINITY_DN6241_c2_g1:57	si_s670	TRINITY_DN6241_c2_g1	46	66	57	-26.90	-24.20	0.899628252788104	5.5	1-19,66-48	20-21,47-46[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	GAGUUUCUGUGAUUAGUUCGA&UCGAAUUGAUUAUAGAAACAU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s670_TRINITY_DN6241_c2_g1_57_TPlot.pdf
TRINITY_DN62426_c0_g1:1016	si_s803	TRINITY_DN62426_c0_g1	1005	1025	1016	-26.00	-17.20	0.661538461538462	12.5	5-11,1021-1015;13-21,1013-1005	1-4,1025-1022[UP5];12-12,1014-1014[SIL]	(((((((((.(((((((....&....))))))).)))))))))	AAGGGGUAGAGGAGGUAUAAG&AUUUUAUCUUCGUUACCUUUU	4	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN62426_c0_g1_1016_TPlot.pdf
TRINITY_DN62426_c0_g1:900	si_a783	TRINITY_DN62426_c0_g1	889	909	900	-24.70	-18.70	0.757085020242915	9.5	3-17,907-893	1-2,909-908[UP5];18-21,892-889[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUAGGGGAAAUAGAAGGGGC&AACUCUUCUAUUUUUCUAUUU	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN62426_c0_g1_900_TPlot.pdf
TRINITY_DN6242_c0_g1:949	si_s403	TRINITY_DN6242_c0_g1	939	958	949	-32.00	-21.60	0.675	6	2-3,957-956;5-14,954-945;16-19,944-941	1-1,958-958[UP5];4-4,955-955[SIL];15-15,x-x[BULq];20-21,940-939[UP3]	..((((-((((((((((.((.&.)).)))))))))).))))..	UAGUCG-UUUUCGUCUUGCUC&AAGGAAGACGAAAAACGACAU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s403_TRINITY_DN6242_c0_g1_949_TPlot.pdf
TRINITY_DN62438_c0_g1:277	si_s69	TRINITY_DN62438_c0_g1	265	286	277	-23.40	-17.30	0.739316239316239	4.5	1-8,286-279;10-15,277-272;16-21,270-265	9-9,278-278[SIL];x-x,271-271[BULt]	((((((.((((((.((((((((&)))))))).))))))-))))))	GGAAGAUAAAAAAUUAGGAGUU&AACUUCUAUUUUUUU-UCUUUC	2	0.999996350154521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN62438_c0_g1_277_TPlot.pdf
TRINITY_DN62442_c0_g1:97	si_a222	TRINITY_DN62442_c0_g1	86	106	97	-25.20	-17.00	0.674603174603175	14	5-16,102-91	1-4,106-103[UP5];17-21,90-86[UP3]	.....((((((((((((....&....)))))))))))).....	GCACAAGAAGCGUGAGUAAAA&UUAAACUCAUGUUUCUAUAAU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN62442_c0_g1_97_TPlot.pdf
TRINITY_DN62456_c0_g1:192	si_a681	TRINITY_DN62456_c0_g1	181	202	192	-33.80	-22.20	0.656804733727811	11.5	5-9,198-194;10-17,192-185;20-21,182-181	1-4,202-199[UP5];x-x,193-193[BULt];18-19,184-183[SIL]	((..((((((((.(((((....&....)))))-))))))))..))	UGGACGAAGCCGCCGUGAUAGC&UUAUUCACG-CGGUUUCGAACA	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN62456_c0_g1_192_TPlot.pdf
TRINITY_DN62456_c0_g1:387	si_a259	TRINITY_DN62456_c0_g1	377	396	387	-39.20	-26.80	0.683673469387755	6.5	2-15,395-382;17-21,381-377	1-1,396-396[UP5];16-16,x-x[BULq]	(((((-((((((((((((((.&.)))))))))))))).)))))	AGGUG-UUGCUUUCGAUGCGC&UUGUAUCGAGGGCAAACGCCU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN62456_c0_g1_387_TPlot.pdf
TRINITY_DN62456_c0_g1:479	si_a691	TRINITY_DN62456_c0_g1	467	488	479	-36.20	-24.20	0.668508287292818	11	1-10,488-479;15-20,473-468	11-14,478-474[AILt];21-21,467-467[UP3]	.((((((.....((((((((((&))))))))))-....)))))).	UUGCCGGGCAUGGUUCGAAGCC&GGUUUCGAAC-ACAACUGGUAC	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a691_TRINITY_DN62456_c0_g1_479_TPlot.pdf
TRINITY_DN62485_c0_g1:170	si_s806	TRINITY_DN62485_c0_g1	158	179	170	-28.60	-19.60	0.685314685314685	7.5	1-3,179-177;5-15,175-165;16-19,163-160	4-4,176-176[SIL];x-x,164-164[BULt];20-21,159-158[UP3]	..((((.(((((((((((.(((&))).)))))))))))-))))..	CUGAAGUAGGUGACGAAGCUGA&UUAUCUUCGUUACCU-UUUCUU	4	0.999999956363713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN62485_c0_g1_170_TPlot.pdf
TRINITY_DN62485_c0_g1:172	si_s804	TRINITY_DN62485_c0_g1	160	181	172	-27.90	-19.40	0.695340501792115	8	3-5,179-177;7-17,175-165;18-21,163-160	1-2,181-180[UP5];6-6,176-176[SIL];x-x,164-164[BULt]	((((.(((((((((((.(((..&..))).)))))))))))-))))	GAAGUAGGUGACGAAGCUGAUG&UUUUAUCUUCGUUACCU-UUUC	2	0.999180446586324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN62485_c0_g1_172_TPlot.pdf
TRINITY_DN624_c0_g1:433	si_s78	TRINITY_DN624_c0_g1	421	442	433	-26.20	-17.90	0.683206106870229	6.5	1-16,442-427;19-21,423-421	17-18,426-424[AILt]	(((...((((((((((((((((&))))))))))))))))-..)))	AGACCAGAAGGAGAGGAAGAAA&UUUUUUUCUUUCCUUU-CUUCU	0	0.841989762271862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN624_c0_g1_433_TPlot.pdf
TRINITY_DN624_c0_g1:436	si_s74	TRINITY_DN624_c0_g1	426	445	436	-25.00	-19.00	0.76	7	1-10,445-436;12-20,435-427	11-11,x-x[BULq];21-21,426-426[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	AGAAGGAGAG-GAAGAAAUGG&CUAUUUUUUUUCUUUCCUUUC	2	0.998313119563257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN624_c0_g1_436_TPlot.pdf
TRINITY_DN624_c0_g1:437	si_s73	TRINITY_DN624_c0_g1	427	446	437	-24.00	-20.40	0.85	6	1-11,446-436;13-21,435-427	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GAAGGAGAG-GAAGAAAUGGA&UCUAUUUUUUUUCUUUCCUUU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN624_c0_g1_437_TPlot.pdf
TRINITY_DN624_c0_g1:438	si_s72	TRINITY_DN624_c0_g1	428	447	438	-24.10	-19.70	0.817427385892116	5	1-12,447-436;14-21,435-428	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	AAGGAGAG-GAAGAAAUGGAG&UUCUAUUUUUUUUCUUUCCUU	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN624_c0_g1_438_TPlot.pdf
TRINITY_DN624_c0_g1:440	si_s70	TRINITY_DN624_c0_g1	430	449	440	-25.80	-20.60	0.798449612403101	6	2-14,448-436;16-21,435-430	1-1,449-449[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	GGAGAG-GAAGAAAUGGAGGA&ACUUCUAUUUUUUUUCUUUCC	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN624_c0_g1_440_TPlot.pdf
TRINITY_DN624_c0_g1:441	si_a549	TRINITY_DN624_c0_g1	430	449	441	-29.50	-20.90	0.708474576271186	6.5	1-2,449-448;5-15,446-436;17-21,434-430	3-4,447-447[AILq];16-16,435-435[SIL]	(((((.(((((((((((.-((&))..))))))))))).)))))	GGAGAGGAAGAAAUGGAG-GA&UCAAUCUAUUUCUUUAUCUCC	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN624_c0_g1_441_TPlot.pdf
TRINITY_DN6251_c0_g1:118	si_a408	TRINITY_DN6251_c0_g1	107	127	118	-20.10	-14.10	0.701492537313433	3.5	1-12,127-116;14-20,114-108	13-13,115-115[SIL];21-21,107-107[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CAUUUGAAAAUAAAUAAAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.99999805292576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN6251_c0_g1_118_TPlot.pdf
TRINITY_DN6251_c0_g1:1431	si_a656	TRINITY_DN6251_c0_g1	1422	1440	1431	-33.80	-23.20	0.686390532544379	6.5	1-10,1440-1431;13-21,1430-1422	11-12,x-x[BULq]	(((((((((--((((((((((&))))))))))..)))))))))	UUAAUAGGC--UUCCUGAUGU&AUAUCGGGAAAUGCCUAUUGA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN6251_c0_g1_1431_TPlot.pdf
TRINITY_DN6251_c0_g1:2985	si_a758	TRINITY_DN6251_c0_g1	2965	2994	2985	-34.00	-25.80	0.758823529411765	12	1-14,2994-2981;15-21,2971-2965	x-x,2980-2972[BULt]	(((((((.........((((((((((((((&))))))))))))))---------)))))))	CAGUCGAGGAGGCAGCAAACCUAGAGGAGG&CCUCCUUUGGGUUU---------UUGAUUG	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6251_c0_g1_2985_TPlot.pdf
TRINITY_DN6251_c0_g1:3010	si_s82	TRINITY_DN6251_c0_g1	2999	3019	3010	-28.90	-23.10	0.799307958477509	2	1-12,3019-3008;14-21,3006-2999	13-13,3007-3007[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AAGAAGAGAAAAGGAAAGAAG&UUUCUUUCCUUUCUUCUUCUU	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6251_c0_g1_3010_TPlot.pdf
TRINITY_DN6251_c0_g1:3014	si_s68	TRINITY_DN6251_c0_g1	3003	3023	3014	-23.10	-15.60	0.675324675324675	6	1-3,3023-3021;4-8,3019-3015;10-21,3014-3003	x-x,3020-3020[BULt];9-9,x-x[BULq]	((((((((((((-(((((.(((&)))-))))).))))))))))))	AGAGAAAAGGAA-AGAAGCUUG&CAA-CUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6251_c0_g1_3014_TPlot.pdf
TRINITY_DN6251_c0_g1:963	si_s117	TRINITY_DN6251_c0_g1	952	972	963	-24.70	-16.20	0.65587044534413	15.5	8-20,965-953	1-7,972-966[UP5];21-21,952-952[UP3]	.(((((((((((((.......&.......))))))))))))).	CGCUCUUCUGUUUUGUGUGGU&AAAUAGAAAAAUAGAAGAGUU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN6251_c0_g1_963_TPlot.pdf
TRINITY_DN62524_c0_g1:243	si_a637	TRINITY_DN62524_c0_g1	232	252	243	-25.80	-20.10	0.779069767441861	8	1-16,252-237	17-21,236-232[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUGAAACUCAAAGGAAUUGAC&GUCGAUUUUUUUGAGUAAUAU	0	0.0329643340461081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN62524_c0_g1_243_TPlot.pdf
TRINITY_DN62524_c0_g1:244	si_a636	TRINITY_DN62524_c0_g1	233	253	244	-26.30	-20.20	0.768060836501901	8	2-17,252-237	1-1,253-253[UP5];18-21,236-233[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGAAACUCAAAGGAAUUGACG&UGUCGAUUUUUUUGAGUAAUA	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN62524_c0_g1_244_TPlot.pdf
TRINITY_DN62524_c0_g1:245	si_a635	TRINITY_DN62524_c0_g1	234	254	245	-26.10	-20.20	0.773946360153257	9	3-18,252-237	1-2,254-253[UP5];19-21,236-234[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAAACUCAAAGGAAUUGACGG&AUGUCGAUUUUUUUGAGUAAU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN62524_c0_g1_245_TPlot.pdf
TRINITY_DN62524_c0_g1:246	si_a634	TRINITY_DN62524_c0_g1	235	255	246	-26.40	-20.20	0.765151515151515	9	3-19,253-237	1-2,255-254[UP5];20-21,236-235[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAACUCAAAGGAAUUGACGGG&UAUGUCGAUUUUUUUGAGUAA	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN62524_c0_g1_246_TPlot.pdf
TRINITY_DN62558_c0_g1:288	si_a331	TRINITY_DN62558_c0_g1	277	302	288	-30.60	-19.90	0.650326797385621	16	2-9,301-294;10-18,288-280	1-1,302-302[UP5];x-x,293-289[BULt];19-21,279-277[UP3]	...(((((((((.....((((((((.&.))))))))-----)))))))))...	GGGGGGACAAGGCUACAAAUGAAGAC&UUUUUUAUU-----CCUUGUCCCGAA	2	0.999961159904183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN62558_c0_g1_288_TPlot.pdf
TRINITY_DN62558_c0_g1:294	si_a330	TRINITY_DN62558_c0_g1	278	303	294	-30.50	-19.90	0.652459016393443	17	3-10,301-294;11-19,288-280	1-2,303-302[UP5];x-x,293-289[BULt];20-21,279-278[UP3]	..(((((((((.....((((((((..&..))))))))-----)))))))))..	GGGGGACAAGGCUACAAAUGAAGACG&UUUUUUUAUU-----CCUUGUCCCGA	3	0.999999973608088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN62558_c0_g1_294_TPlot.pdf
TRINITY_DN62558_c0_g1:295	si_a329	TRINITY_DN62558_c0_g1	279	304	295	-29.60	-19.90	0.672297297297297	18	4-11,301-294;12-20,288-280	1-3,304-302[UP5];x-x,293-289[BULt];21-21,279-279[UP3]	.(((((((((.....((((((((...&...))))))))-----))))))))).	GGGGACAAGGCUACAAAUGAAGACGA&AUUUUUUUAUU-----CCUUGUCCCG	4	0.999998711497521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN62558_c0_g1_295_TPlot.pdf
TRINITY_DN6255_c0_g1:1133	si_a800	TRINITY_DN6255_c0_g1	1120	1142	1133	-33.70	-23.00	0.682492581602374	6.5	1-14,1142-1129;15-18,1126-1123	x-x,1128-1127[BULt];19-21,1122-1120[UP3]	...((((..((((((((((((((&))))))))))))))--))))...	AUCUGCUAAUCGGGUUGGAAAAU&AUUUUCCAAUCCGA--AGCGAAG	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN6255_c0_g1_1133_TPlot.pdf
TRINITY_DN6255_c0_g1:1137	si_a796	TRINITY_DN6255_c0_g1	1124	1146	1137	-32.70	-21.90	0.669724770642202	9.5	5-18,1142-1129;19-21,1126-1124	1-4,1146-1143[UP5];x-x,1128-1127[BULt]	(((..((((((((((((((....&....))))))))))))))--)))	GCUAAUCGGGUUGGAAAAUCUUC&UUCUAUUUUCCAAUCCGA--AGC	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN6255_c0_g1_1137_TPlot.pdf
TRINITY_DN6255_c0_g1:1138	si_a795	TRINITY_DN6255_c0_g1	1127	1147	1138	-30.20	-19.70	0.652317880794702	11.5	6-19,1142-1129	1-5,1147-1143[UP5];20-21,1128-1127[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAUCGGGUUGGAAAAUCUUCU&UUUCUAUUUUCCAAUCCGAAG	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN6255_c0_g1_1138_TPlot.pdf
TRINITY_DN6255_c0_g1:1139	si_a794	TRINITY_DN6255_c0_g1	1128	1148	1139	-28.60	-19.70	0.688811188811189	12.5	7-20,1142-1129	1-6,1148-1143[UP5];21-21,1128-1128[UP3]	.((((((((((((((......&......)))))))))))))).	AUCGGGUUGGAAAAUCUUCUC&UUUUCUAUUUUCCAAUCCGAA	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN6255_c0_g1_1139_TPlot.pdf
TRINITY_DN6255_c0_g1:244	si_s100	TRINITY_DN6255_c0_g1	230	254	244	-33.70	-22.70	0.673590504451039	12	1-3,254-252;4-12,250-242;13-17,238-234	x-x,251-251[BULt];x-x,241-239[BULt];18-21,233-230[UP3]	....(((((...(((((((((.(((&)))-)))))))))---)))))....	AUGGUCCAAGUCUCCGAAGCGUAAG&CUU-CGCUUCGGA---UUGGAAAAU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN6255_c0_g1_244_TPlot.pdf
TRINITY_DN6255_c0_g1:247	si_s97	TRINITY_DN6255_c0_g1	233	257	247	-36.30	-25.40	0.699724517906336	7	2-6,256-252;7-15,250-242;16-20,238-234	1-1,257-257[UP5];x-x,251-251[BULt];x-x,241-239[BULt];21-21,233-233[UP3]	.(((((...(((((((((.(((((.&.)))))-)))))))))---))))).	GUCCAAGUCUCCGAAGCGUAAGAAA&CUUCUU-CGCUUCGGA---UUGGAA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN6255_c0_g1_247_TPlot.pdf
TRINITY_DN62591_c0_g1:285	si_a817	TRINITY_DN62591_c0_g1	274	294	285	-30.90	-21.20	0.686084142394822	3.5	1-15,294-280;18-21,277-274	16-17,279-278[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	UUCUAGUCUUUUUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN62591_c0_g1_285_TPlot.pdf
TRINITY_DN6259_c0_g1:832	si_s26	TRINITY_DN6259_c0_g1	821	841	832	-26.70	-18.00	0.674157303370786	9	1-13,841-829	14-21,828-821[UP3]	........(((((((((((((&)))))))))))))........	GGAACUCAAGUUGCAGUCAAU&AUUGAUUGCAACUAAAUCUUU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN6259_c0_g1_832_TPlot.pdf
TRINITY_DN6259_c0_g1:833	si_s25	TRINITY_DN6259_c0_g1	822	842	833	-27.10	-18.80	0.693726937269373	8.5	1-14,842-829	15-21,828-822[UP3]	.......((((((((((((((&)))))))))))))).......	GAACUCAAGUUGCAGUCAAUG&UAUUGAUUGCAACUAAAUCUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN6259_c0_g1_833_TPlot.pdf
TRINITY_DN6259_c0_g1:834	si_s24	TRINITY_DN6259_c0_g1	823	843	834	-27.30	-18.80	0.688644688644689	9	2-15,842-829	1-1,843-843[UP5];16-21,828-823[UP3]	......((((((((((((((.&.))))))))))))))......	AACUCAAGUUGCAGUCAAUGC&AUAUUGAUUGCAACUAAAUCU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN6259_c0_g1_834_TPlot.pdf
TRINITY_DN6259_c0_g1:835	si_s23	TRINITY_DN6259_c0_g1	824	844	835	-27.00	-18.80	0.696296296296296	10	3-16,842-829	1-2,844-843[UP5];17-21,828-824[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACUCAAGUUGCAGUCAAUGCU&UAUAUUGAUUGCAACUAAAUC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN6259_c0_g1_835_TPlot.pdf
TRINITY_DN6259_c0_g1:836	si_s22	TRINITY_DN6259_c0_g1	825	845	836	-26.70	-18.80	0.704119850187266	11	4-17,842-829	1-3,845-843[UP5];18-21,828-825[UP3]	....((((((((((((((...&...))))))))))))))....	CUCAAGUUGCAGUCAAUGCUC&CUAUAUUGAUUGCAACUAAAU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN6259_c0_g1_836_TPlot.pdf
TRINITY_DN6259_c0_g1:837	si_s21	TRINITY_DN6259_c0_g1	826	846	837	-27.40	-18.80	0.686131386861314	12	5-18,842-829	1-4,846-843[UP5];19-21,828-826[UP3]	...((((((((((((((....&....))))))))))))))...	UCAAGUUGCAGUCAAUGCUCA&ACUAUAUUGAUUGCAACUAAA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN6259_c0_g1_837_TPlot.pdf
TRINITY_DN6259_c0_g1:838	si_s20	TRINITY_DN6259_c0_g1	827	847	838	-27.80	-18.80	0.676258992805755	13	6-19,842-829	1-5,847-843[UP5];20-21,828-827[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAAGUUGCAGUCAAUGCUCAU&UACUAUAUUGAUUGCAACUAA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s20_TRINITY_DN6259_c0_g1_838_TPlot.pdf
TRINITY_DN6259_c0_g1:841	si_s17	TRINITY_DN6259_c0_g1	830	855	841	-27.20	-18.02	0.6625	16.5	2-7,854-849;9-21,842-830	1-1,855-855[UP5];8-8,848-843[AILt]	(((((((((((((......((((((.&.))))))-----.)))))))))))))	GUUGCAGUCAAUGCUCAUCAGUGGUU&UAUUACU-----AUAUUGAUUGCAAC	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN6259_c0_g1_841_TPlot.pdf
TRINITY_DN6259_c0_g1:907	si_s86	TRINITY_DN6259_c0_g1	896	916	907	-32.90	-24.00	0.729483282674772	4.5	1-7,916-910;9-9,908-908;11-21,906-896	8-8,909-909[SIL];10-10,907-907[SIL]	(((((((((((.(.(((((((&))))))).).)))))))))))	AGUGAAGAAGAUGUAAGGAAA&UUUCCUUUCUUCUUCUUCGCU	3	0.999995664853904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6259_c0_g1_907_TPlot.pdf
TRINITY_DN6259_c0_g1:908	si_s85	TRINITY_DN6259_c0_g1	897	917	908	-33.80	-25.10	0.742603550295858	4.5	1-8,917-910;10-10,908-908;12-21,906-897	9-9,909-909[SIL];11-11,907-907[SIL]	((((((((((.(.((((((((&)))))))).).))))))))))	GUGAAGAAGAUGUAAGGAAAG&CUUUCCUUUCUUCUUCUUCGC	2	0.991702220255531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6259_c0_g1_908_TPlot.pdf
TRINITY_DN6259_c0_g1:909	si_s84	TRINITY_DN6259_c0_g1	898	918	909	-32.30	-21.70	0.671826625386997	5.5	2-9,917-910;11-11,908-908;13-21,906-898	1-1,918-918[UP5];10-10,909-909[SIL];12-12,907-907[SIL]	(((((((((.(.((((((((.&.)))))))).).)))))))))	UGAAGAAGAUGUAAGGAAAGC&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6259_c0_g1_909_TPlot.pdf
TRINITY_DN6259_c0_g1:910	si_s83	TRINITY_DN6259_c0_g1	899	919	910	-30.90	-21.00	0.679611650485437	6	3-10,917-910;12-12,908-908;14-21,906-899	1-2,919-918[UP5];11-11,909-909[SIL];13-13,907-907[SIL]	((((((((.(.((((((((..&..)))))))).).))))))))	GAAGAAGAUGUAAGGAAAGCU&UUCUUUCCUUUCUUCUUCUUC	2	0.999999999999797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6259_c0_g1_910_TPlot.pdf
TRINITY_DN6259_c0_g1:911	si_s82	TRINITY_DN6259_c0_g1	897	920	911	-28.90	-19.20	0.664359861591695	13	4-11,917-910;12-19,906-899	1-3,920-918[UP5];x-x,909-907[BULt];20-21,898-897[UP3]	..((((((((...((((((((...&...))))))))---))))))))..	GUGAAGAAGAUGUAAGGAAAGCUU&UUUCUUUCCUU---UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6259_c0_g1_911_TPlot.pdf
TRINITY_DN6259_c0_g1:912	si_s81	TRINITY_DN6259_c0_g1	898	921	912	-28.90	-19.20	0.664359861591695	14	5-12,917-910;13-20,906-899	1-4,921-918[UP5];x-x,909-907[BULt];21-21,898-898[UP3]	.((((((((...((((((((....&....))))))))---)))))))).	UGAAGAAGAUGUAAGGAAAGCUUA&UUUUCUUUCCUU---UCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6259_c0_g1_912_TPlot.pdf
TRINITY_DN6259_c0_g1:913	si_s80	TRINITY_DN6259_c0_g1	899	922	913	-28.20	-18.80	0.666666666666667	12	6-13,917-910;14-21,906-899	1-5,922-918[UP5];x-x,909-907[BULt]	((((((((...((((((((.....&.....))))))))---))))))))	GAAGAAGAUGUAAGGAAAGCUUAC&UUUUUCUUUCCUU---UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6259_c0_g1_913_TPlot.pdf
TRINITY_DN625_c1_g2:2494	si_a317	TRINITY_DN625_c1_g2	2482	2503	2494	-24.30	-17.20	0.707818930041152	9.5	3-11,2501-2493;12-21,2491-2482	1-2,2503-2502[UP5];x-x,2492-2492[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	UGAGAAAGUCUAUGGGUGGAAU&GAUUUAUCCAU-GAUUUUUUUA	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN625_c1_g2_2494_TPlot.pdf
TRINITY_DN6261_c0_g1:3975	si_s439	TRINITY_DN6261_c0_g1	3963	3984	3975	-21.50	-14.70	0.683720930232558	4	2-7,3983-3978;9-17,3976-3968;18-21,3966-3963	1-1,3984-3984[UP5];8-8,3977-3977[SIL];x-x,3967-3967[BULt]	((((.(((((((((.((((((.&.)))))).)))))))))-))))	UGUUGAUAUAUAAUUUGUAAUG&AAUUACAUAUUAUAUAU-AACA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN6261_c0_g1_3975_TPlot.pdf
TRINITY_DN6263_c0_g1:1188	si_s428	TRINITY_DN6263_c0_g1	1177	1197	1188	-21.50	-15.50	0.720930232558139	6.5	1-9,1197-1189;11-18,1187-1180	10-10,1188-1188[SIL];19-21,1179-1177[UP3]	...((((((((.(((((((((&))))))))).))))))))...	GAUUGUGAUUGAUGUUAUAUA&UAUAUAACAAUAAUUACAUAU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN6263_c0_g1_1188_TPlot.pdf
TRINITY_DN6263_c0_g1:1190	si_s426	TRINITY_DN6263_c0_g1	1179	1199	1190	-23.60	-15.70	0.665254237288135	7	3-11,1197-1189;13-20,1187-1180	1-2,1199-1198[UP5];12-12,1188-1188[SIL];21-21,1179-1179[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	UUGUGAUUGAUGUUAUAUAAU&UCUAUAUAACAAUAAUUACAU	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN6263_c0_g1_1190_TPlot.pdf
TRINITY_DN6263_c0_g1:955	si_s488	TRINITY_DN6263_c0_g1	944	964	955	-18.30	-13.30	0.726775956284153	6	1-17,964-948	18-21,947-944[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUUAUUAUAUUUAGGUAAAUA&UAUUUAUUUAAAUAUAAACAA	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN6263_c0_g1_955_TPlot.pdf
TRINITY_DN6265_c0_g2:821	si_a79	TRINITY_DN6265_c0_g2	809	830	821	-22.20	-14.60	0.657657657657658	7	1-10,830-821;12-17,819-814;18-20,812-810	11-11,820-820[SIL];x-x,813-813[BULt];21-21,809-809[UP3]	.(((.((((((.((((((((((&)))))))))).))))))-))).	CUUCUUUGGUAUUGGGAAACAA&UUGUUUUUCAUUAUUAA-GAAA	2	0.999988671922528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN6265_c0_g2_821_TPlot.pdf
TRINITY_DN62673_c0_g1:475	si_s553	TRINITY_DN62673_c0_g1	464	484	475	-23.50	-16.30	0.693617021276596	8	4-19,481-466	1-3,484-482[UP5];20-21,465-464[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAGAAAAUAUUAAUUCUGAAG&AAAUAGAAUUAAUAUUUUCGG	0	0.064374046958894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN62673_c0_g1_475_TPlot.pdf
TRINITY_DN62673_c0_g1:476	si_s552	TRINITY_DN62673_c0_g1	465	485	476	-21.10	-16.30	0.772511848341232	9	5-20,481-466	1-4,485-482[UP5];21-21,465-465[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAAAUAUUAAUUCUGAAGA&AAAAUAGAAUUAAUAUUUUCG	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN62673_c0_g1_476_TPlot.pdf
TRINITY_DN62673_c0_g1:488	si_a70	TRINITY_DN62673_c0_g1	477	497	488	-23.90	-18.50	0.774058577405858	6	1-17,497-481	18-21,480-477[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUCUGAAGACAAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN62673_c0_g1_488_TPlot.pdf
TRINITY_DN62673_c0_g1:489	si_a69	TRINITY_DN62673_c0_g1	478	498	489	-24.00	-18.70	0.779166666666667	6	2-18,497-481	1-1,498-498[UP5];19-21,480-478[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UCUGAAGACAAUUUGGAAGAU&UUCUUUCAAAUUGUUUUUCAU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN62673_c0_g1_489_TPlot.pdf
TRINITY_DN62673_c0_g1:490	si_a68	TRINITY_DN62673_c0_g1	479	499	490	-25.40	-18.70	0.736220472440945	7	3-19,497-481	1-2,499-498[UP5];20-21,480-479[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CUGAAGACAAUUUGGAAGAUG&CUUCUUUCAAAUUGUUUUUCA	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN62673_c0_g1_490_TPlot.pdf
TRINITY_DN62673_c0_g1:495	si_a63	TRINITY_DN62673_c0_g1	484	504	495	-30.20	-20.20	0.66887417218543	7.5	1-2,504-503;5-6,500-499;8-21,497-484	3-4,502-501[SIL];7-7,498-498[SIL]	((((((((((((((.((..((&))..)).))))))))))))))	GACAAUUUGGAAGAUGCUUGU&ACUCGCUUCUUUCAAAUUGUU	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN62673_c0_g1_495_TPlot.pdf
TRINITY_DN62692_c0_g1:63	si_s86	TRINITY_DN62692_c0_g1	52	77	63	-32.90	-25.30	0.768996960486322	12	1-7,77-71;8-21,65-52	x-x,70-66[BULt]	((((((((((((((.....(((((((&)))))))-----))))))))))))))	GGUGGAGAAGAAGAUCGCGAAGGAAG&UUUCCUU-----UCUUCUUCUUCGCU	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN62692_c0_g1_63_TPlot.pdf
TRINITY_DN62692_c0_g1:65	si_s84	TRINITY_DN62692_c0_g1	54	79	65	-32.30	-25.50	0.789473684210526	12	1-9,79-71;10-21,65-54	x-x,70-66[BULt]	((((((((((((.....(((((((((&)))))))))-----))))))))))))	UGGAGAAGAAGAUCGCGAAGGAAGGA&UCUUUCCUU-----UCUUCUUCUUCG	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN62692_c0_g1_65_TPlot.pdf
TRINITY_DN626_c0_g1:2325	si_a369	TRINITY_DN626_c0_g1	2314	2334	2325	-30.00	-19.90	0.663333333333333	9	5-12,2330-2323;14-21,2321-2314	1-4,2334-2331[UP5];13-13,2322-2322[SIL]	((((((((.((((((((....&....)))))))).))))))))	GGAGUCAUAUUUGAUCCUAAU&GAUCGGAUCAAAAAUGAUUUC	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN626_c0_g1_2325_TPlot.pdf
TRINITY_DN626_c0_g1:2400	si_a407	TRINITY_DN626_c0_g1	2389	2409	2400	-19.80	-13.10	0.661616161616162	7.5	1-15,2409-2395	16-21,2394-2389[UP3]	......(((((((((((((((&)))))))))))))))......	AUUGUUAUGUAAAUAAAACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.999999999999918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN626_c0_g1_2400_TPlot.pdf
TRINITY_DN6272_c0_g1:1081	si_s677	TRINITY_DN6272_c0_g1	1069	1090	1081	-27.10	-17.70	0.653136531365314	7	1-10,1090-1081;12-16,1078-1074;19-21,1071-1069	11-11,1080-1079[AILt];17-18,1073-1072[SIL]	(((..(((((..((((((((((&))))))))))-.)))))..)))	UAAUGUCAUGGCUUCUAUAGUC&GAUUAUAGAA-ACAUGAGUUUA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s677_TRINITY_DN6272_c0_g1_1081_TPlot.pdf
TRINITY_DN6272_c0_g1:1083	si_s675	TRINITY_DN6272_c0_g1	1071	1092	1083	-27.50	-18.60	0.676363636363636	7	1-12,1092-1081;14-18,1078-1074	13-13,1080-1079[AILt];19-21,1073-1071[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	AUGUCAUGGCUUCUAUAGUCAA&UUGAUUAUAGAA-ACAUGAGUU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN6272_c0_g1_1083_TPlot.pdf
TRINITY_DN6272_c0_g1:1087	si_s671	TRINITY_DN6272_c0_g1	1075	1096	1087	-27.60	-22.40	0.811594202898551	4	1-16,1096-1081;18-21,1078-1075	17-17,1080-1079[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	CAUGGCUUCUAUAGUCAAUUUG&CGAAUUGAUUAUAGAA-ACAUG	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s671_TRINITY_DN6272_c0_g1_1087_TPlot.pdf
TRINITY_DN6272_c0_g1:1284	si_a142	TRINITY_DN6272_c0_g1	1273	1293	1284	-23.50	-15.50	0.659574468085106	11	6-13,1288-1281;15-21,1279-1273	1-5,1293-1289[UP5];14-14,1280-1280[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	UUGGAACUACAACGAUGAAGA&AAUUAAUCGUUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6272_c0_g1_1284_TPlot.pdf
TRINITY_DN6272_c0_g1:1360	si_a854	TRINITY_DN6272_c0_g1	1349	1369	1360	-25.00	-16.30	0.652	11.5	3-8,1367-1362;11-19,1359-1351	1-2,1369-1368[UP5];9-10,1361-1360[SIL];20-21,1350-1349[UP3]	..(((((((((..((((((..&..))))))..)))))))))..	GUGUGGUUGGACAUCGAGUAU&UAACUUGAAAUCCAAUUAUUA	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN6272_c0_g1_1360_TPlot.pdf
TRINITY_DN6272_c0_g1:1915	si_a194	TRINITY_DN6272_c0_g1	1904	1924	1915	-29.40	-20.20	0.687074829931973	11	2-13,1923-1912	1-1,1924-1924[UP5];14-21,1911-1904[UP3]	........((((((((((((.&.))))))))))))........	ACUGCCAUGUGGACAGGGGAC&UUUCCCUGUUCACUAAUAAAU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN6272_c0_g1_1915_TPlot.pdf
TRINITY_DN6272_c0_g1:1916	si_a193	TRINITY_DN6272_c0_g1	1905	1925	1916	-30.90	-20.20	0.653721682847896	12	3-14,1923-1912	1-2,1925-1924[UP5];15-21,1911-1905[UP3]	.......((((((((((((..&..)))))))))))).......	CUGCCAUGUGGACAGGGGACA&CUUUCCCUGUUCACUAAUAAA	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN6272_c0_g1_1916_TPlot.pdf
TRINITY_DN6272_c0_g1:459	si_a400	TRINITY_DN6272_c0_g1	448	471	459	-22.80	-15.64	0.685964912280702	12.5	1-6,471-466;8-20,461-449	7-7,465-462[AILt];21-21,448-448[UP3]	.(((((((((((((....((((((&))))))---.))))))))))))).	AGUAGACGAGGCAAGUCCUCUAUA&UAUAGA---AUUGUUUUGUUUAUA	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN6272_c0_g1_459_TPlot.pdf
TRINITY_DN6273_c0_g1:2436	si_a139	TRINITY_DN6273_c0_g1	2425	2445	2436	-25.90	-17.80	0.687258687258687	9	1-6,2445-2440;9-14,2437-2432;16-21,2430-2425	7-8,2439-2438[SIL];15-15,2431-2431[SIL]	((((((.((((((..((((((&))))))..)))))).))))))	AGACGGGAGCGAUGUGUUGCU&AGUAAUUAAUCGUUGUUGUUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN6273_c0_g1_2436_TPlot.pdf
TRINITY_DN6273_c0_g1:2437	si_a138	TRINITY_DN6273_c0_g1	2426	2446	2437	-26.30	-17.20	0.653992395437262	10	2-7,2445-2440;10-15,2437-2432;17-21,2430-2426	1-1,2446-2446[UP5];8-9,2439-2438[SIL];16-16,2431-2431[SIL]	(((((.((((((..((((((.&.))))))..)))))).)))))	GACGGGAGCGAUGUGUUGCUU&UAGUAAUUAAUCGUUGUUGUU	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN6273_c0_g1_2437_TPlot.pdf
TRINITY_DN6273_c0_g1:2445	si_a641	TRINITY_DN6273_c0_g1	2434	2454	2445	-23.60	-15.50	0.656779661016949	18	9-21,2446-2434	1-8,2454-2447[UP5]	(((((((((((((........&........)))))))))))))	CGAUGUGUUGCUUUUUAUGAA&AUUUUUUUGAGUAAUAUAUCG	4	0.999996933736392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN6273_c0_g1_2445_TPlot.pdf
TRINITY_DN6273_c0_g1:2446	si_a640	TRINITY_DN6273_c0_g1	2435	2462	2446	-24.10	-16.30	0.676348547717842	20.5	1-9,2462-2454;10-21,2446-2435	x-x,2453-2447[BULt]	((((((((((((.......(((((((((&)))))))))-------))))))))))))	GAUGUGUUGCUUUUUAUGAAAGGGAGUC&GAUUUUUUU-------GAGUAAUAUAUC	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN6273_c0_g1_2446_TPlot.pdf
TRINITY_DN6273_c0_g1:2958	si_s72	TRINITY_DN6273_c0_g1	2946	2967	2958	-24.10	-15.90	0.659751037344398	9.5	1-9,2967-2959;11-13,2957-2955;14-21,2953-2946	10-10,2958-2958[SIL];x-x,2954-2954[BULt]	((((((((.(((.(((((((((&))))))))).)))-))))))))	AGGGGGAGCAAGCGAAGUGGGA&UUCUAUUUUUUUU-CUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6273_c0_g1_2958_TPlot.pdf
TRINITY_DN6273_c0_g1:6721	si_s629	TRINITY_DN6273_c0_g1	6711	6734	6721	-34.60	-23.00	0.664739884393064	12.5	1-5,6734-6730;6-14,6725-6717;16-21,6716-6711	x-x,6729-6726[BULt];15-15,x-x[BULq]	((((((-(((((((((....(((((&)))))----))))))))).))))))	CAGACG-CUGCGAGAGCUCUGAUCG&CGAUC----UUUUCGUAGGCGUUUG	4	0.999745850014447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN6273_c0_g1_6721_TPlot.pdf
TRINITY_DN62740_c0_g1:618	si_s896	TRINITY_DN62740_c0_g1	607	627	618	-31.60	-22.00	0.69620253164557	6.5	1-5,627-623;7-10,621-618;12-21,616-607	6-6,622-622[SIL];11-11,617-617[SIL]	((((((((((.((((.(((((&))))).)))).))))))))))	UGAGAUUGAGUAGGAUGCCUA&UAGGCUUUCUCUUCAAUUUCA	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN62740_c0_g1_618_TPlot.pdf
TRINITY_DN62754_c0_g1:587	si_s691	TRINITY_DN62754_c0_g1	576	596	587	-26.20	-18.80	0.717557251908397	8	2-15,595-582	1-1,596-596[UP5];16-21,581-576[UP3]	......((((((((((((((.&.))))))))))))))......	GAUUGCCGACUAGUUAAACUG&GAGUUUAAUUAGUCGAUUUAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN62754_c0_g1_587_TPlot.pdf
TRINITY_DN62759_c0_g1:166	si_s72	TRINITY_DN62759_c0_g1	155	176	166	-24.10	-16.50	0.684647302904564	9.5	1-7,176-170;8-15,168-161;17-21,159-155	x-x,169-169[BULt];16-16,160-160[SIL]	(((((.((((((((.(((((((&)))))))-)))))))).)))))	GAGGAUGGGGGAAACGAUGGGA&UUCUAUU-UUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN62759_c0_g1_166_TPlot.pdf
TRINITY_DN62759_c0_g1:189	si_s76	TRINITY_DN62759_c0_g1	172	198	189	-23.60	-16.20	0.686440677966102	16	2-12,197-187;13-20,180-173	1-1,198-198[UP5];x-x,186-181[BULt];21-21,172-172[UP3]	.((((((((......(((((((((((.&.)))))))))))------)))))))).	UGGGAAGGAAUAAAUAAGAGAAAAAAG&AUUUUUUUUCUU------UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN62759_c0_g1_189_TPlot.pdf
TRINITY_DN62759_c0_g1:190	si_s75	TRINITY_DN62759_c0_g1	173	199	190	-24.00	-16.20	0.675	11	3-13,197-187;14-21,180-173	1-2,199-198[UP5];x-x,186-181[BULt]	((((((((......(((((((((((..&..)))))))))))------))))))))	GGGAAGGAAUAAAUAAGAGAAAAAAGA&UAUUUUUUUUCUU------UCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN62759_c0_g1_190_TPlot.pdf
TRINITY_DN6275_c0_g1:456	si_s691	TRINITY_DN6275_c0_g1	446	464	456	-26.20	-17.30	0.66030534351145	9	1-9,464-456;12-19,455-448	10-11,x-x[BULq];20-21,447-446[UP3]	..((((((((--(((((((((&)))))))))..))))))))..	CAGGAUCGAU--AUUAAGCUC&GAGUUUAAUUAGUCGAUUUAU	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN6275_c0_g1_456_TPlot.pdf
TRINITY_DN6275_c0_g1:460	si_a761	TRINITY_DN6275_c0_g1	449	469	460	-30.10	-19.88	0.66046511627907	8	1-11,469-459;15-21,455-449	12-14,458-456[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	GAUCGAUAUUAAGCUCGAAGG&CCUUUGGGUUUUUGAUUGAUU	2	0.999997455977433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN6275_c0_g1_460_TPlot.pdf
TRINITY_DN6275_c0_g1:578	si_a606	TRINITY_DN6275_c0_g1	567	589	578	-32.60	-22.00	0.674846625766871	10	2-7,588-583;8-16,580-572;18-19,570-569	1-1,589-589[UP5];x-x,582-581[BULt];17-17,571-571[SIL];20-21,568-567[UP3]	..((.(((((((((..((((((.&.))))))--))))))))).))..	UUGUGGAUUGGAGUUUUGCGGAC&UUUCGCA--AUUCCAAUCGACUA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN6275_c0_g1_578_TPlot.pdf
TRINITY_DN6275_c0_g1:579	si_a605	TRINITY_DN6275_c0_g1	568	590	579	-32.20	-22.00	0.683229813664596	11	3-8,588-583;9-17,580-572;19-20,570-569	1-2,590-589[UP5];x-x,582-581[BULt];18-18,571-571[SIL];21-21,568-568[UP3]	.((.(((((((((..((((((..&..))))))--))))))))).)).	UGUGGAUUGGAGUUUUGCGGACU&UUUUCGCA--AUUCCAAUCGACU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN6275_c0_g1_579_TPlot.pdf
TRINITY_DN6275_c0_g1:580	si_a604	TRINITY_DN6275_c0_g1	569	591	580	-31.60	-21.60	0.683544303797468	12	4-9,588-583;10-18,580-572;20-21,570-569	1-3,591-589[UP5];x-x,582-581[BULt];19-19,571-571[SIL]	((.(((((((((..((((((...&...))))))--))))))))).))	GUGGAUUGGAGUUUUGCGGACUU&AUUUUCGCA--AUUCCAAUCGAC	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN6275_c0_g1_580_TPlot.pdf
TRINITY_DN6276_c0_g1:1000	si_s86	TRINITY_DN6276_c0_g1	990	1010	1000	-32.90	-22.30	0.677811550151976	5	1-6,1010-1005;8-18,1002-992;20-21,991-990	7-7,1004-1003[AILt];19-19,x-x[BULq]	((-(((((((((((..((((((&))))))-.))))))))))).))	AG-GAAGAAGAAGACCAGGAAA&UUUCCU-UUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6276_c0_g1_1000_TPlot.pdf
TRINITY_DN6276_c0_g1:2667	si_a318	TRINITY_DN6276_c0_g1	2656	2676	2667	-22.50	-17.10	0.76	5	3-11,2674-2666;13-21,2664-2656	1-2,2676-2675[UP5];12-12,2665-2665[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUAAAAAAACCAUGGAUAACC&AUUUAUCCAUGAUUUUUUUAU	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN6276_c0_g1_2667_TPlot.pdf
TRINITY_DN6276_c0_g1:6568	si_s580	TRINITY_DN6276_c0_g1	6557	6577	6568	-24.40	-21.60	0.885245901639344	4	3-21,6575-6557	1-2,6577-6576[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUAUCCAUGGUUUUUUUAUGU&GAAUAAAAAAAUCAUGGAUAA	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN6276_c0_g1_6568_TPlot.pdf
TRINITY_DN6276_c0_g1:6574	si_s574	TRINITY_DN6276_c0_g1	6563	6585	6574	-26.20	-17.10	0.652671755725191	5.5	1-2,6585-6584;3-8,6582-6577;9-21,6575-6563	x-x,6583-6583[BULt];x-x,6576-6576[BULt]	(((((((((((((.((((((.((&))-))))))-)))))))))))))	AUGGUUUUUUUAUGUUCUUGCUC&GA-CAAGGA-AUAAAAAAAUCAU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN6276_c0_g1_6574_TPlot.pdf
TRINITY_DN6276_c0_g2:1056	si_s294	TRINITY_DN6276_c0_g2	1047	1065	1056	-32.60	-21.40	0.656441717791411	7	1-11,1065-1055;14-19,1054-1049	12-13,x-x[BULq];20-21,1048-1047[UP3]	..((((((--(((((((((((&)))))))))))..))))))..	UGUUGCGA--CCAAUCGGCUA&UAGUCGAUUGGAAUUGCGAAA	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN6276_c0_g2_1056_TPlot.pdf
TRINITY_DN6276_c0_g2:1335	si_s37	TRINITY_DN6276_c0_g2	1324	1344	1335	-24.40	-15.90	0.651639344262295	8.5	1-3,1344-1342;5-11,1340-1334;14-20,1331-1325	4-4,1341-1341[SIL];12-13,1333-1332[SIL];21-21,1324-1324[UP3]	.(((((((..(((((((.(((&))).)))))))..))))))).	UUCCGAUUUCUGAAGAUAUGG&CUAAAUCUUUAAUAAUUGGAU	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN6276_c0_g2_1335_TPlot.pdf
TRINITY_DN6276_c0_g2:1366	si_s95	TRINITY_DN6276_c0_g2	1354	1376	1366	-36.30	-24.20	0.666666666666667	6	1-9,1376-1368;10-14,1366-1362;16-20,1359-1355	x-x,1367-1367[BULt];15-15,1361-1360[AILt];21-21,1354-1354[UP3]	.(((((..(((((.(((((((((&)))))))))-)))))-.))))).	GCAAUCGGGAAGCUGAGGAAGAA&UUCUUCUUC-GCUUC-GGAUUGG	2	0.99751887635167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN6276_c0_g2_1366_TPlot.pdf
TRINITY_DN6276_c0_g2:1374	si_s72	TRINITY_DN6276_c0_g2	1359	1383	1374	-24.10	-18.70	0.775933609958506	8.5	1-16,1383-1368;17-20,1363-1360	x-x,1367-1364[BULt];21-21,1359-1359[UP3]	.((((....((((((((((((((((&))))))))))))))))----)))).	CGGGAAGCUGAGGAAGAAAAUGGAA&UUCUAUUUUUUUUCUU----UCCUU	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6276_c0_g2_1374_TPlot.pdf
TRINITY_DN6276_c0_g2:1376	si_s70	TRINITY_DN6276_c0_g2	1361	1385	1376	-25.80	-20.40	0.790697674418605	8	2-18,1384-1368;19-21,1363-1361	1-1,1385-1385[UP5];x-x,1367-1364[BULt]	(((....(((((((((((((((((.&.)))))))))))))))))----)))	GGAAGCUGAGGAAGAAAAUGGAAGA&ACUUCUAUUUUUUUUCUU----UCC	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6276_c0_g2_1376_TPlot.pdf
TRINITY_DN6276_c0_g2:1377	si_s69	TRINITY_DN6276_c0_g2	1366	1386	1377	-23.40	-18.30	0.782051282051282	7.5	3-19,1384-1368	1-2,1386-1385[UP5];20-21,1367-1366[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CUGAGGAAGAAAAUGGAAGAU&AACUUCUAUUUUUUUUCUUUC	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6276_c0_g2_1377_TPlot.pdf
TRINITY_DN6276_c0_g2:1381	si_s65	TRINITY_DN6276_c0_g2	1370	1393	1381	-26.00	-17.20	0.661538461538462	10	2-6,1392-1388;7-21,1384-1370	1-1,1393-1393[UP5];x-x,1387-1385[BULt]	(((((((((((((((...(((((.&.)))))---)))))))))))))))	GGAAGAAAAUGGAAGAUAUUGUUU&UAGCAA---CUUCUAUUUUUUUUC	4	0.999999902393794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN6276_c0_g2_1381_TPlot.pdf
TRINITY_DN6276_c0_g2:444	si_a502	TRINITY_DN6276_c0_g2	433	453	444	-32.10	-21.80	0.679127725856698	9	1-14,453-440	15-21,439-433[UP3]	.......((((((((((((((&)))))))))))))).......	AAACGUUGGAGGACGAGAAAC&GUUUUUCGUCUUCCUUGGAAU	2	0.999990717359949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN6276_c0_g2_444_TPlot.pdf
TRINITY_DN6276_c0_g2:448	si_a498	TRINITY_DN6276_c0_g2	437	457	448	-33.50	-22.20	0.662686567164179	11.5	5-18,453-440	1-4,457-454[UP5];19-21,439-437[UP3]	...((((((((((((((....&....))))))))))))))...	GUUGGAGGACGAGAAACUAUG&UGUCGUUUUUCGUCUUCCUUG	2	0.999999980409248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6276_c0_g2_448_TPlot.pdf
TRINITY_DN6276_c0_g2:476	si_s89	TRINITY_DN6276_c0_g2	461	487	476	-35.30	-23.80	0.674220963172805	10	1-4,487-484;5-15,481-471;16-20,466-462	x-x,483-482[BULt];x-x,470-467[BULt];21-21,461-461[UP3]	.(((((....(((((((((((..((((&))))--)))))))))))----))))).	AGAAGCAAUCGAAGAAGGAGAAAAAGG&CCUU--UCUUCUUCUUC----GCUUCG	4	0.99999999999716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6276_c0_g2_476_TPlot.pdf
TRINITY_DN6276_c0_g2:483	si_s71	TRINITY_DN6276_c0_g2	472	495	483	-25.70	-17.10	0.665369649805448	10	1-6,495-490;7-19,486-474	x-x,489-487[BULt];20-21,473-472[UP3]	..(((((((((((((...((((((&))))))---)))))))))))))..	AAGAAGGAGAAAAAGGUUUAGAAG&CUUCUA---UUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6276_c0_g2_483_TPlot.pdf
TRINITY_DN6276_c0_g2:486	si_s81	TRINITY_DN6276_c0_g2	473	499	486	-28.90	-19.00	0.657439446366782	13.5	1-8,499-492;9-12,487-484;13-21,481-473	x-x,491-488[BULt];x-x,483-482[BULt]	(((((((((..((((....((((((((&))))))))----))))--)))))))))	AGAAGGAGAAAAAGGUUUAGAAGAAAA&UUUUCUUU----CCUU--UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6276_c0_g2_486_TPlot.pdf
TRINITY_DN6276_c0_g2:586	si_s80	TRINITY_DN6276_c0_g2	575	595	586	-28.20	-18.50	0.656028368794326	10.5	4-17,592-579	1-3,595-593[UP5];18-21,578-575[UP3]	....((((((((((((((...&...))))))))))))))....	AACUGAGAAAGGAAGGAAUAU&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6276_c0_g2_586_TPlot.pdf
TRINITY_DN6276_c0_g2:590	si_s76	TRINITY_DN6276_c0_g2	579	599	590	-23.60	-18.50	0.783898305084746	14.5	8-21,592-579	1-7,599-593[UP5]	((((((((((((((.......&.......))))))))))))))	GAGAAAGGAAGGAAUAUGUCG&AUUUUUUUUCUUUCCUUUCUU	2	0.999997889226889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6276_c0_g2_590_TPlot.pdf
TRINITY_DN62776_c0_g1:216	si_a339	TRINITY_DN62776_c0_g1	205	226	216	-31.10	-20.40	0.655948553054662	10	1-8,226-219;9-13,217-213	x-x,218-218[BULt];14-21,212-205[UP3]	........(((((.((((((((&))))))))-)))))........	GCCGCAUCUUCGGCGACAAGGA&UCCUUGUC-CCGAAAAUAUUAA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a339_TRINITY_DN62776_c0_g1_216_TPlot.pdf
TRINITY_DN62776_c0_g1:225	si_a331	TRINITY_DN62776_c0_g1	213	234	225	-30.60	-20.20	0.660130718954248	16	9-16,226-219;17-21,217-213	1-8,234-227[UP5];x-x,218-218[BULt]	(((((.((((((((........&........))))))))-)))))	UUCGGCGACAAGGACAAAACCG&UUUUUUAUUCCUUGUC-CCGAA	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN62776_c0_g1_225_TPlot.pdf
TRINITY_DN62776_c0_g1:338	si_a758	TRINITY_DN62776_c0_g1	327	348	338	-34.00	-23.80	0.7	7.5	1-9,348-340;10-16,338-332;18-18,330-330	x-x,339-339[BULt];17-17,331-331[SIL];19-21,329-327[UP3]	...(.(((((((.(((((((((&)))))))))-))))))).)...	ACUUGGGAGACCACAAAGGAGG&CCUCCUUUG-GGUUUUUGAUUG	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN62776_c0_g1_338_TPlot.pdf
TRINITY_DN62776_c0_g1:340	si_a757	TRINITY_DN62776_c0_g1	328	349	340	-33.10	-23.80	0.719033232628399	7.5	2-10,348-340;11-17,338-332;19-19,330-330	1-1,349-349[UP5];x-x,339-339[BULt];18-18,331-331[SIL];20-21,329-328[UP3]	..(.(((((((.(((((((((.&.)))))))))-))))))).)..	CUUGGGAGACCACAAAGGAGGA&ACCUCCUUUG-GGUUUUUGAUU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN62776_c0_g1_340_TPlot.pdf
TRINITY_DN6277_c0_g2:51	si_a477	TRINITY_DN6277_c0_g2	40	60	51	-21.50	-14.10	0.655813953488372	9	1-15,60-46	16-21,45-40[UP3]	......(((((((((((((((&)))))))))))))))......	UAACGAGUGUAACAAUGGUUA&UAAUUAUUGUUAUAUAGAAUA	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN6277_c0_g2_51_TPlot.pdf
TRINITY_DN6277_c0_g2:57	si_a471	TRINITY_DN6277_c0_g2	46	66	57	-21.10	-13.90	0.658767772511848	8	3-5,64-62;7-21,60-46	1-2,66-65[UP5];6-6,61-61[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GUGUAACAAUGGUUAAAUACC&AAUAUGUAAUUAUUGUUAUAU	4	0.999999980084876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6277_c0_g2_57_TPlot.pdf
TRINITY_DN62790_c0_g1:94	si_s13	TRINITY_DN62790_c0_g1	83	103	94	-22.90	-15.40	0.672489082969432	4.5	1-13,103-91;16-16,88-88;18-21,86-83	14-15,90-89[SIL];17-17,87-87[SIL]	((((.(..(((((((((((((&)))))))))))))..).))))	CAAUGGUGAUAGUAAUAAUGA&UUAUUAUUACUAUAUUGAUUG	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN62790_c0_g1_94_TPlot.pdf
TRINITY_DN6279_c0_g1:2758	si_a757	TRINITY_DN6279_c0_g1	2746	2767	2758	-33.10	-21.60	0.652567975830816	10	1-6,2767-2762;9-11,2759-2757;12-19,2755-2748	7-8,2761-2760[SIL];x-x,2756-2756[BULt];20-21,2747-2746[UP3]	..((((((((.(((..((((((&))))))..)))-))))))))..	CCUCAGAGAUACCAUCGGAGGU&ACCUCCUUUGG-GUUUUUGAUU	4	0.99999999998457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6279_c0_g1_2758_TPlot.pdf
TRINITY_DN6279_c0_g1:2759	si_a756	TRINITY_DN6279_c0_g1	2747	2768	2759	-33.10	-21.90	0.661631419939577	9.5	2-7,2767-2762;10-12,2759-2757;13-20,2755-2748	1-1,2768-2768[UP5];8-9,2761-2760[SIL];x-x,2756-2756[BULt];21-21,2747-2747[UP3]	.((((((((.(((..((((((.&.))))))..)))-)))))))).	CUCAGAGAUACCAUCGGAGGUG&AACCUCCUUUGG-GUUUUUGAU	0	0.372980181517401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN6279_c0_g1_2759_TPlot.pdf
TRINITY_DN6279_c0_g1:842	si_s73	TRINITY_DN6279_c0_g1	830	852	842	-24.00	-16.30	0.679166666666667	8.5	1-4,852-849;6-17,846-835;18-21,833-830	5-5,848-847[AILt];x-x,834-834[BULt]	((((.((((((((((((..((((&))))-.))))))))))))-))))	GAAGAGAAAGAAAAGGAUUUGGA&UCUA-UUUUUUUUCUUUC-CUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6279_c0_g1_842_TPlot.pdf
TRINITY_DN6279_c0_g1:843	si_s72	TRINITY_DN6279_c0_g1	831	853	843	-24.10	-15.90	0.659751037344398	8	1-5,853-849;7-18,846-835;19-21,833-831	6-6,848-847[AILt];x-x,834-834[BULt]	(((.((((((((((((..(((((&)))))-.))))))))))))-)))	AAGAGAAAGAAAAGGAUUUGGAA&UUCUA-UUUUUUUUCUUUC-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6279_c0_g1_843_TPlot.pdf
TRINITY_DN62812_c0_g1:350	si_s72	TRINITY_DN62812_c0_g1	339	359	350	-24.10	-22.10	0.91701244813278	7	3-21,357-339	1-2,359-358[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGGGAAGGAGAAGAAGUAGUU&UUCUAUUUUUUUUCUUUCCUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN62812_c0_g1_350_TPlot.pdf
TRINITY_DN6286_c0_g4:30	si_a553	TRINITY_DN6286_c0_g4	19	39	30	-33.70	-22.30	0.661721068249258	7	1-13,39-27;16-20,24-20	14-15,26-25[SIL];21-21,19-19[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	CUGGGGUAAUAAGGGAAUGGG&UCUAUUUCUUUAUCUCCCCGU	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN6286_c0_g4_30_TPlot.pdf
TRINITY_DN62879_c0_g1:100	si_s75	TRINITY_DN62879_c0_g1	82	109	100	-24.00	-15.70	0.654166666666667	23	4-12,106-98;13-21,90-82	1-3,109-107[UP5];x-x,97-91[BULt]	(((((((((.......(((((((((...&...)))))))))-------)))))))))	GGAGAGGAAGUUCGCUAGAAGAGAGGAA&UAUUUUUUUUCU-------UUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN62879_c0_g1_100_TPlot.pdf
TRINITY_DN62879_c0_g1:91	si_a181	TRINITY_DN62879_c0_g1	79	100	91	-32.00	-21.50	0.671875	10.5	1-5,100-96;8-10,93-91;12-21,88-79	6-7,95-94[SIL];11-11,90-89[AILt]	((((((((((..(((..(((((&)))))..)))-.))))))))))	CAGGGAGAGGAAGUUCGCUAGA&UCUAGAUAAU-AUCUUUCCCUG	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN62879_c0_g1_91_TPlot.pdf
TRINITY_DN62879_c0_g1:92	si_s71	TRINITY_DN62879_c0_g1	81	102	92	-25.70	-18.10	0.704280155642023	12.5	1-6,102-97;11-21,91-81	7-10,96-92[AILt]	(((((((((((.....((((((&))))))-....)))))))))))	GGGAGAGGAAGUUCGCUAGAAG&CUUCUA-UUUUUUUUCUUUCCU	2	0.999999999501702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN62879_c0_g1_92_TPlot.pdf
TRINITY_DN62879_c0_g1:99	si_s76	TRINITY_DN62879_c0_g1	81	108	99	-23.60	-16.00	0.677966101694915	21.5	3-11,106-98;12-21,90-81	1-2,108-107[UP5];x-x,97-91[BULt]	((((((((((.......(((((((((..&..)))))))))-------))))))))))	GGGAGAGGAAGUUCGCUAGAAGAGAGGA&AUUUUUUUUCU-------UUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN62879_c0_g1_99_TPlot.pdf
TRINITY_DN6287_c0_g1:1859	si_a638	TRINITY_DN6287_c0_g1	1848	1868	1859	-24.40	-15.90	0.651639344262295	12.5	1-7,1868-1862;9-15,1860-1854	8-8,1861-1861[SIL];16-21,1853-1848[UP3]	......(((((((.(((((((&))))))).)))))))......	GGAGGGGCUCGGAUGAGUCGA&UCGAUUUUUUUGAGUAAUAUA	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN6287_c0_g1_1859_TPlot.pdf
TRINITY_DN6287_c0_g1:2018	si_s92	TRINITY_DN6287_c0_g1	2006	2027	2018	-34.90	-24.50	0.702005730659026	7	1-12,2027-2016;14-17,2013-2010;19-21,2008-2006	13-13,2015-2014[AILt];18-18,2009-2009[SIL]	(((.((((..((((((((((((&))))))))))))-.)))).)))	GUCGGGAGAGGAGGAGGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	2	0.998895147471782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN6287_c0_g1_2018_TPlot.pdf
TRINITY_DN6287_c0_g1:2022	si_s69	TRINITY_DN6287_c0_g1	2011	2030	2022	-23.40	-18.30	0.782051282051282	7	2-7,2029-2024;9-21,2023-2011	1-1,2030-2030[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GAGAGGAGGAGGA-AGAAGUG&AACUUCUAUUUUUUUUCUUUC	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6287_c0_g1_2022_TPlot.pdf
TRINITY_DN6287_c0_g1:2027	si_s796	TRINITY_DN6287_c0_g1	2016	2036	2027	-30.30	-20.30	0.66996699669967	8	1-3,2036-2034;5-12,2032-2025;14-18,2023-2019;20-21,2017-2016	4-4,2033-2033[SIL];13-13,2024-2024[SIL];19-19,2018-2018[SIL]	((.(((((.((((((((.(((&))).)))))))).))))).))	GAGGAGGAAGAAGUGCGCGCU&AGCUCGUAUUUUAUCUUCGUU	2	0.999105841890088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN6287_c0_g1_2027_TPlot.pdf
TRINITY_DN6287_c0_g1:2150	si_a819	TRINITY_DN6287_c0_g1	2138	2159	2150	-28.90	-18.80	0.650519031141869	6	2-10,2158-2150;11-14,2148-2145;17-20,2142-2139	1-1,2159-2159[UP5];x-x,2149-2149[BULt];15-16,2144-2143[SIL];21-21,2138-2138[UP3]	.((((..((((.(((((((((.&.)))))))))-))))..)))).	AUUUCAAUCCUCUUCUUCUUCG&AGAAGAAGAA-AGGAAAGAAAA	3	0.999695714582656	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN6287_c0_g1_2150_TPlot.pdf
TRINITY_DN6287_c0_g1:2156	si_a810	TRINITY_DN6287_c0_g1	2145	2165	2156	-35.30	-23.50	0.6657223796034	10	5-18,2161-2148	1-4,2165-2162[UP5];19-21,2147-2145[UP3]	...((((((((((((((....&....))))))))))))))...	UCCUCUUCUUCUUCGCUGCUG&CCGAAGCGAAGAAGAAGAAAG	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a810_TRINITY_DN6287_c0_g1_2156_TPlot.pdf
TRINITY_DN6287_c0_g1:558	si_s94	TRINITY_DN6287_c0_g1	545	567	558	-35.50	-23.20	0.653521126760563	6	1-11,567-557;12-16,555-551;17-18,549-548;20-21,546-545	x-x,556-556[BULt];x-x,550-550[BULt];19-19,547-547[SIL]	((.((.(((((.(((((((((((&)))))))))))-)))))-)).))	CACUCGCGAAGAUGAAGAAGGAG&CUUCUUCUUCG-CUUCG-GAUUG	4	0.999999999665697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN6287_c0_g1_558_TPlot.pdf
TRINITY_DN6287_c0_g1:559	si_s87	TRINITY_DN6287_c0_g1	548	569	559	-32.90	-24.60	0.747720364741641	7	1-3,569-567;4-11,565-558;13-19,556-550	x-x,566-566[BULt];12-12,557-557[SIL];20-21,549-548[UP3]	..(((((((.((((((((.(((&)))-)))))))).)))))))..	UCGCGAAGAUGAAGAAGGAGAA&UUC-CUUUCUUCUUCUUCGCUU	4	0.99978893980951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6287_c0_g1_559_TPlot.pdf
TRINITY_DN628_c0_g1:4126	si_a74	TRINITY_DN628_c0_g1	4115	4135	4126	-22.20	-16.60	0.747747747747748	7	1-16,4135-4120	17-21,4119-4115[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUAACAUGGAGAACAAUUUGG&UCAAAUUGUUUUUCAUUAUUA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN628_c0_g1_4126_TPlot.pdf
TRINITY_DN628_c0_g1:4127	si_a73	TRINITY_DN628_c0_g1	4116	4136	4127	-21.90	-16.60	0.757990867579909	7.5	2-17,4135-4120	1-1,4136-4136[UP5];18-21,4119-4116[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAACAUGGAGAACAAUUUGGU&UUCAAAUUGUUUUUCAUUAUU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN628_c0_g1_4127_TPlot.pdf
TRINITY_DN628_c0_g1:4128	si_a72	TRINITY_DN628_c0_g1	4117	4137	4128	-21.90	-16.60	0.757990867579909	8	3-18,4135-4120	1-2,4137-4136[UP5];19-21,4119-4117[UP3]	...((((((((((((((((..&..))))))))))))))))...	AACAUGGAGAACAAUUUGGUA&UUUCAAAUUGUUUUUCAUUAU	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN628_c0_g1_4128_TPlot.pdf
TRINITY_DN628_c0_g1:4129	si_a71	TRINITY_DN628_c0_g1	4118	4138	4129	-23.30	-17.50	0.751072961373391	6	1-2,4138-4137;4-19,4135-4120	3-3,4136-4136[SIL];20-21,4119-4118[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	ACAUGGAGAACAAUUUGGUAG&CUUUCAAAUUGUUUUUCAUUA	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN628_c0_g1_4129_TPlot.pdf
TRINITY_DN628_c0_g1:4130	si_a70	TRINITY_DN628_c0_g1	4119	4139	4130	-23.90	-17.50	0.732217573221757	6	2-3,4138-4137;5-20,4135-4120	1-1,4139-4139[UP5];4-4,4136-4136[SIL];21-21,4119-4119[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	CAUGGAGAACAAUUUGGUAGC&UCUUUCAAAUUGUUUUUCAUU	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN628_c0_g1_4130_TPlot.pdf
TRINITY_DN628_c0_g1:4131	si_a69	TRINITY_DN628_c0_g1	4120	4140	4131	-24.00	-17.50	0.729166666666667	7	3-4,4138-4137;6-21,4135-4120	1-2,4140-4139[UP5];5-5,4136-4136[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	AUGGAGAACAAUUUGGUAGCU&UUCUUUCAAAUUGUUUUUCAU	2	0.990718684271405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN628_c0_g1_4131_TPlot.pdf
TRINITY_DN628_c0_g1:4546	si_s72	TRINITY_DN628_c0_g1	4535	4554	4546	-24.10	-16.00	0.663900414937759	9	3-6,4552-4549;9-20,4547-4536	1-2,4554-4553[UP5];7-8,4548-4548[AILq];21-21,4535-4535[UP3]	.((((((((((((.-((((..&..))))..)))))))))))).	CAGGAAAGAAAAAU-GUAGCG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN628_c0_g1_4546_TPlot.pdf
TRINITY_DN628_c0_g1:4788	si_s73	TRINITY_DN628_c0_g1	4777	4797	4788	-24.00	-16.00	0.666666666666667	7.5	3-15,4795-4783;17-21,4781-4777	1-2,4797-4796[UP5];16-16,4782-4782[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GAAGGCAAGGAAAAAGAUGCU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN628_c0_g1_4788_TPlot.pdf
TRINITY_DN628_c0_g1:5188	si_a128	TRINITY_DN628_c0_g1	5177	5197	5188	-23.20	-17.00	0.732758620689655	9.5	5-20,5193-5178	1-4,5197-5194[UP5];21-21,5177-5177[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUUAAUUGCUAUUGUUAAACC&UUUAUAGCAAUAGUAAUUAAU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN628_c0_g1_5188_TPlot.pdf
TRINITY_DN628_c0_g1:5189	si_a127	TRINITY_DN628_c0_g1	5178	5198	5189	-23.10	-16.90	0.731601731601731	10.5	6-21,5193-5178	1-5,5198-5194[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAAUUGCUAUUGUUAAACCA&UUUUAUAGCAAUAGUAAUUAA	2	0.68961381237186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN628_c0_g1_5189_TPlot.pdf
TRINITY_DN6291_c0_g1:748	si_a254	TRINITY_DN6291_c0_g1	733	758	748	-38.80	-25.30	0.652061855670103	16	1-4,758-755;5-12,753-746;13-18,741-736	x-x,754-754[BULt];x-x,745-742[BULt];19-21,735-733[UP3]	...((((((....((((((((.((((&))))-))))))))----))))))...	GAGGCCCUCUGGGGGUGCAAUAUGGG&CCCG-AUUGUAUC----GAGGGCAAA	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN6291_c0_g1_748_TPlot.pdf
TRINITY_DN62937_c0_g1:520	si_s69	TRINITY_DN62937_c0_g1	505	529	520	-23.40	-15.70	0.670940170940171	5.5	2-15,528-515;16-17,511-510;18-21,508-505	1-1,529-529[UP5];x-x,514-512[BULt];x-x,509-509[BULt]	((((.((...((((((((((((((.&.))))))))))))))---))-))))	GAAACGAUGCAGAAAAAUAGAAGUA&AACUUCUAUUUUUUU---UC-UUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN62937_c0_g1_520_TPlot.pdf
TRINITY_DN62938_c0_g1:373	si_a398	TRINITY_DN62938_c0_g1	362	385	373	-22.40	-16.40	0.732142857142857	11.5	3-8,383-378;9-21,374-362	1-2,385-384[UP5];x-x,377-375[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	UGAACAAGGCAAUCAAUCUGUAAA&AAUAUAGA---AUUGUUUUGUUUA	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN62938_c0_g1_373_TPlot.pdf
TRINITY_DN62941_c0_g1:244	si_a585	TRINITY_DN62941_c0_g1	232	252	244	-31.60	-21.90	0.693037974683544	5	1-5,252-248;7-11,247-243;12-21,241-232	6-6,x-x[BULq];x-x,242-242[BULt]	((((((((((.(((((-(((((&))))).)))))-))))))))))	GUUCUGUUCUCUCUUG-UACAA&UUGUAACAAGA-AGGACAGAAU	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN62941_c0_g1_244_TPlot.pdf
TRINITY_DN62941_c0_g1:245	si_a584	TRINITY_DN62941_c0_g1	233	253	245	-31.50	-21.30	0.676190476190476	4.5	1-6,253-248;8-12,247-243;13-21,241-233	7-7,x-x[BULq];x-x,242-242[BULt]	(((((((((.(((((-((((((&)))))).)))))-)))))))))	UUCUGUUCUCUCUUG-UACAAA&UUUGUAACAAGA-AGGACAGAA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a584_TRINITY_DN62941_c0_g1_245_TPlot.pdf
TRINITY_DN6294_c0_g1:711	si_s30	TRINITY_DN6294_c0_g1	700	720	711	-24.80	-20.40	0.82258064516129	5.5	2-8,719-713;11-21,710-700	1-1,720-720[UP5];9-10,712-711[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	UAUUAAGGAUUGUGUUGCAAA&AUUGCAACUAAAUCUUUAAUA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN6294_c0_g1_711_TPlot.pdf
TRINITY_DN6294_c0_g1:713	si_s28	TRINITY_DN6294_c0_g1	702	722	713	-27.00	-18.00	0.666666666666667	9.5	4-10,719-713;13-21,710-702	1-3,722-720[UP5];11-12,712-711[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	UUAAGGAUUGUGUUGCAAAAU&UGAUUGCAACUAAAUCUUUAA	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN6294_c0_g1_713_TPlot.pdf
TRINITY_DN6295_c0_g1:173	si_a632	TRINITY_DN6295_c0_g1	162	182	173	-26.10	-17.20	0.659003831417624	14	6-20,177-163	1-5,182-178[UP5];21-21,162-162[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CCUCGGAAAAGUUGGCUUUCA&AUUAUGUCGAUUUUUUUGAGU	4	0.999999999744379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN6295_c0_g1_173_TPlot.pdf
TRINITY_DN6297_c0_g2:737	si_a831	TRINITY_DN6297_c0_g2	726	746	737	-23.40	-15.60	0.666666666666667	3.5	1-13,746-734;15-19,732-728	14-14,733-733[SIL];20-21,727-726[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UUCUUUUCUUUUUUUUCUUUC&GAAAGAAAAAAAAUAGAAGUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a831_TRINITY_DN6297_c0_g2_737_TPlot.pdf
TRINITY_DN6298_c0_g1:518	si_s79	TRINITY_DN6298_c0_g1	496	527	518	-26.20	-17.50	0.66793893129771	15	3-14,525-514;15-21,502-496	1-2,527-526[UP5];x-x,513-503[BULt]	(((((((...........((((((((((((..&..))))))))))))-----------)))))))	AAGAAGAAUUUACAUUUGAAGGAGAGAAAACA&UUUUUUCUUUCCUU-----------UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6298_c0_g1_518_TPlot.pdf
TRINITY_DN62997_c0_g1:288	si_s529	TRINITY_DN62997_c0_g1	279	297	288	-30.30	-20.50	0.676567656765677	3	1-13,297-285;15-16,284-283;18-20,282-280	14-14,x-x[BULq];17-17,x-x[BULq];21-21,279-279[UP3]	.(((-((-(((((((((((((&))))))))))))).)).))).	ACGG-UC-AAAAUGAUUUCGA&UCGAAAUCAUUUUUGAUCCGA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN62997_c0_g1_288_TPlot.pdf
TRINITY_DN62997_c0_g1:289	si_s528	TRINITY_DN62997_c0_g1	280	298	289	-29.40	-20.90	0.710884353741497	2.5	1-14,298-285;16-17,284-283;19-21,282-280	15-15,x-x[BULq];18-18,x-x[BULq]	(((-((-((((((((((((((&)))))))))))))).)).)))	CGG-UC-AAAAUGAUUUCGAG&UUCGAAAUCAUUUUUGAUCCG	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN62997_c0_g1_289_TPlot.pdf
TRINITY_DN62997_c0_g1:290	si_s527	TRINITY_DN62997_c0_g1	280	299	290	-28.00	-19.70	0.703571428571429	4.5	2-15,298-285;17-20,284-281	1-1,299-299[UP5];16-16,x-x[BULq];21-21,280-280[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	CGGUC-AAAAUGAUUUCGAGC&AUUCGAAAUCAUUUUUGAUCC	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN62997_c0_g1_290_TPlot.pdf
TRINITY_DN62997_c0_g1:291	si_s526	TRINITY_DN62997_c0_g1	281	300	291	-25.60	-19.70	0.76953125	5.5	3-16,298-285;18-21,284-281	1-2,300-299[UP5];17-17,x-x[BULq]	((((-((((((((((((((..&..)))))))))))))).))))	GGUC-AAAAUGAUUUCGAGCU&AAUUCGAAAUCAUUUUUGAUC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN62997_c0_g1_291_TPlot.pdf
TRINITY_DN62997_c0_g1:292	si_s525	TRINITY_DN62997_c0_g1	282	301	292	-24.00	-17.30	0.720833333333333	7.5	4-17,298-285;19-21,284-282	1-3,301-299[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	GUC-AAAAUGAUUUCGAGCUG&UAAUUCGAAAUCAUUUUUGAU	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN62997_c0_g1_292_TPlot.pdf
TRINITY_DN62997_c0_g1:293	si_s524	TRINITY_DN62997_c0_g1	283	302	293	-23.90	-15.80	0.661087866108787	9	5-18,298-285;20-21,284-283	1-4,302-299[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	UC-AAAAUGAUUUCGAGCUGG&UUAAUUCGAAAUCAUUUUUGA	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN62997_c0_g1_293_TPlot.pdf
TRINITY_DN62997_c0_g1:297	si_s520	TRINITY_DN62997_c0_g1	286	306	297	-24.00	-16.40	0.683333333333333	10	4-7,303-300;9-21,298-286	1-3,306-304[UP5];8-8,299-299[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AAAUGAUUUCGAGCUGGGCGA&AUUCUUAAUUCGAAAUCAUUU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN62997_c0_g1_297_TPlot.pdf
TRINITY_DN62997_c0_g1:509	si_a272	TRINITY_DN62997_c0_g1	501	518	509	-35.40	-26.20	0.740112994350283	5.5	2-12,517-507;16-21,506-501	1-1,518-518[UP5];13-15,x-x[BULq]	((((((---(((((((((((.&.)))))))))))...))))))	GCGAUU---UCGUGGGCGUUA&AAACGCCUACGAAAAGAUCGC	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a272_TRINITY_DN62997_c0_g1_509_TPlot.pdf
TRINITY_DN62997_c0_g1:510	si_a271	TRINITY_DN62997_c0_g1	502	519	510	-34.60	-22.80	0.658959537572254	7.5	3-13,517-507;17-21,506-502	1-2,519-518[UP5];14-16,x-x[BULq]	(((((---(((((((((((..&..)))))))))))...)))))	CGAUU---UCGUGGGCGUUAU&CAAACGCCUACGAAAAGAUCG	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a271_TRINITY_DN62997_c0_g1_510_TPlot.pdf
TRINITY_DN62997_c0_g1:515	si_a266	TRINITY_DN62997_c0_g1	504	526	515	-38.30	-30.10	0.785900783289817	7.5	1-4,526-523;6-8,521-519;9-20,516-505	5-5,522-522[SIL];x-x,518-517[BULt];21-21,504-504[UP3]	.((((((((((((..(((.((((&)))).)))--)))))))))))).	AUUUCGUGGGCGUUAUUGGCCUC&GAGGGCAA--ACGCCUACGAAAA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a266_TRINITY_DN62997_c0_g1_515_TPlot.pdf
TRINITY_DN62997_c0_g1:516	si_a265	TRINITY_DN62997_c0_g1	505	527	516	-39.80	-30.00	0.753768844221106	7.5	2-5,526-523;7-9,521-519;10-21,516-505	1-1,527-527[UP5];6-6,522-522[SIL];x-x,518-517[BULt]	((((((((((((..(((.((((.&.)))).)))--))))))))))))	UUUCGUGGGCGUUAUUGGCCUCA&CGAGGGCAA--ACGCCUACGAAA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a265_TRINITY_DN62997_c0_g1_516_TPlot.pdf
TRINITY_DN62997_c0_g1:519	si_a264	TRINITY_DN62997_c0_g1	506	528	519	-40.80	-29.20	0.715686274509804	9.5	3-6,526-523;8-10,521-519;11-21,516-506	1-2,528-527[UP5];7-7,522-522[SIL];x-x,518-517[BULt]	(((((((((((..(((.((((..&..)))).)))--)))))))))))	UUCGUGGGCGUUAUUGGCCUCAA&UCGAGGGCAA--ACGCCUACGAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a264_TRINITY_DN62997_c0_g1_519_TPlot.pdf
TRINITY_DN62997_c0_g1:520	si_a263	TRINITY_DN62997_c0_g1	507	529	520	-40.90	-28.30	0.691931540342298	11.5	4-7,526-523;9-11,521-519;12-21,516-507	1-3,529-527[UP5];8-8,522-522[SIL];x-x,518-517[BULt]	((((((((((..(((.((((...&...)))).)))--))))))))))	UCGUGGGCGUUAUUGGCCUCAAC&AUCGAGGGCAA--ACGCCUACGA	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a263_TRINITY_DN62997_c0_g1_520_TPlot.pdf
TRINITY_DN62997_c0_g1:521	si_a262	TRINITY_DN62997_c0_g1	508	530	521	-40.30	-26.20	0.650124069478908	13.5	5-8,526-523;10-12,521-519;13-21,516-508	1-4,530-527[UP5];9-9,522-522[SIL];x-x,518-517[BULt]	(((((((((..(((.((((....&....)))).)))--)))))))))	CGUGGGCGUUAUUGGCCUCAACA&UAUCGAGGGCAA--ACGCCUACG	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a262_TRINITY_DN62997_c0_g1_521_TPlot.pdf
TRINITY_DN629_c0_g1:10144	si_s76	TRINITY_DN629_c0_g1	10132	10153	10144	-23.60	-17.40	0.73728813559322	10	3-10,10151-10144;12-21,10141-10132	1-2,10153-10152[UP5];11-11,10143-10142[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	GAGGAAGGAGCUGAAAAAGAUG&AUUUUUUUUC-UUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN629_c0_g1_10144_TPlot.pdf
TRINITY_DN629_c0_g1:10153	si_a18	TRINITY_DN629_c0_g1	10139	10163	10153	-26.30	-17.30	0.657794676806084	10.5	2-5,10162-10159;7-13,10156-10150;14-21,10146-10139	1-1,10163-10163[UP5];6-6,10158-10157[AILt];x-x,10149-10147[BULt]	((((((((...(((((((..((((.&.))))-.)))))))---))))))))	GAGCUGAAAAAGAUGAAUCUGGCUA&AAGCC-UAUUUAUU---UUUAGUUC	3	0.999997490280328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN629_c0_g1_10153_TPlot.pdf
TRINITY_DN629_c0_g1:10875	si_a463	TRINITY_DN629_c0_g1	10864	10883	10875	-19.70	-13.60	0.690355329949239	7	1-7,10883-10877;9-19,10876-10866	8-8,x-x[BULq];20-21,10865-10864[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	AAGGUUACAUGUU-UGUAUAA&UUAUAUAUAAUAUGUAAUUAU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN629_c0_g1_10875_TPlot.pdf
TRINITY_DN629_c0_g1:1620	si_s82	TRINITY_DN629_c0_g1	1609	1630	1620	-28.90	-19.80	0.685121107266436	7	3-7,1628-1624;9-21,1621-1609	1-2,1630-1629[UP5];8-8,1623-1622[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	AAGAAGAAGAAAGAUAAAGAUG&UUUCUUU-CCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN629_c0_g1_1620_TPlot.pdf
TRINITY_DN629_c0_g1:1621	si_s81	TRINITY_DN629_c0_g1	1610	1631	1621	-28.90	-18.90	0.653979238754325	9	4-8,1628-1624;10-21,1621-1610	1-3,1631-1629[UP5];9-9,1623-1622[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	AGAAGAAGAAAGAUAAAGAUGC&UUUUCUUU-CCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN629_c0_g1_1621_TPlot.pdf
TRINITY_DN629_c0_g1:1671	si_s79	TRINITY_DN629_c0_g1	1660	1687	1671	-26.20	-17.08	0.651908396946565	20	2-8,1686-1680;11-21,1670-1660	1-1,1687-1687[UP5];9-10,1679-1671[AILt]	(((((((((((.........(((((((.&.)))))))-------..)))))))))))	AAGAAGAAAGGUGACUCACUAGAAAGAG&UUUUUUCU-------UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN629_c0_g1_1671_TPlot.pdf
TRINITY_DN629_c0_g1:2160	si_s82	TRINITY_DN629_c0_g1	2149	2170	2160	-28.90	-19.80	0.685121107266436	7	3-7,2168-2164;9-21,2161-2149	1-2,2170-2169[UP5];8-8,2163-2162[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	AAGAAGAAGAAAGAUAAAGAUG&UUUCUUU-CCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN629_c0_g1_2160_TPlot.pdf
TRINITY_DN629_c0_g1:2161	si_s81	TRINITY_DN629_c0_g1	2150	2171	2161	-28.90	-18.90	0.653979238754325	9	4-8,2168-2164;10-21,2161-2150	1-3,2171-2169[UP5];9-9,2163-2162[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	AGAAGAAGAAAGAUAAAGAUGC&UUUUCUUU-CCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN629_c0_g1_2161_TPlot.pdf
TRINITY_DN629_c0_g1:2211	si_s79	TRINITY_DN629_c0_g1	2200	2227	2211	-26.20	-17.08	0.651908396946565	20	2-8,2226-2220;11-21,2210-2200	1-1,2227-2227[UP5];9-10,2219-2211[AILt]	(((((((((((.........(((((((.&.)))))))-------..)))))))))))	AAGAAGAAAGGUGACUCACUAGAAAGAG&UUUUUUCU-------UUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN629_c0_g1_2211_TPlot.pdf
TRINITY_DN629_c0_g1:2212	si_s78	TRINITY_DN629_c0_g1	2201	2228	2212	-26.20	-17.78	0.678625954198473	20	1-9,2228-2220;12-21,2210-2201	10-11,2219-2211[AILt]	((((((((((.........(((((((((&)))))))))-------..))))))))))	AGAAGAAAGGUGACUCACUAGAAAGAGA&UUUUUUUCU-------UUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN629_c0_g1_2212_TPlot.pdf
TRINITY_DN629_c0_g1:2220	si_s77	TRINITY_DN629_c0_g1	2202	2229	2220	-25.50	-16.68	0.654117647058823	21	2-10,2228-2220;13-21,2210-2202	1-1,2229-2229[UP5];11-12,2219-2211[AILt]	(((((((((.........(((((((((.&.)))))))))-------..)))))))))	GAAGAAAGGUGACUCACUAGAAAGAGAU&UUUUUUUUCU-------UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN629_c0_g1_2220_TPlot.pdf
TRINITY_DN629_c0_g1:2460	si_s525	TRINITY_DN629_c0_g1	2449	2469	2460	-24.00	-16.00	0.666666666666667	7.5	4-12,2466-2458;14-21,2456-2449	1-3,2469-2467[UP5];13-13,2457-2457[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GUCAAAAAAGAUUUUGAAGGA&UAAUUCGAAAUCAUUUUUGAU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN629_c0_g1_2460_TPlot.pdf
TRINITY_DN629_c0_g1:2605	si_s41	TRINITY_DN629_c0_g1	2596	2614	2605	-25.00	-16.50	0.66	3.5	1-14,2614-2601;17-21,2600-2596	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	UGAGA--CAGUUAUUAAAGAU&AUCUUUAAUAAUUGGAUUUCA	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN629_c0_g1_2605_TPlot.pdf
TRINITY_DN629_c0_g1:2606	si_s40	TRINITY_DN629_c0_g1	2595	2615	2606	-24.30	-15.80	0.650205761316872	6	2-15,2614-2601;18-19,2598-2597	1-1,2615-2615[UP5];16-17,2600-2599[SIL];20-21,2596-2595[UP3]	..((..((((((((((((((.&.))))))))))))))..))..	CUGAGACAGUUAUUAAAGAUA&AAUCUUUAAUAAUUGGAUUUC	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN629_c0_g1_2606_TPlot.pdf
TRINITY_DN629_c0_g1:2608	si_s38	TRINITY_DN629_c0_g1	2597	2617	2608	-22.70	-15.80	0.696035242290749	8	4-17,2614-2601;20-21,2598-2597	1-3,2617-2615[UP5];18-19,2600-2599[SIL]	((..((((((((((((((...&...))))))))))))))..))	GAGACAGUUAUUAAAGAUAUA&UAAAUCUUUAAUAAUUGGAUU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN629_c0_g1_2608_TPlot.pdf
TRINITY_DN629_c0_g1:275	si_s83	TRINITY_DN629_c0_g1	264	285	275	-30.90	-20.70	0.669902912621359	5	1-6,285-280;8-20,277-265	7-7,279-278[AILt];21-21,264-264[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AAAGAAGAAGAAAGAUAAAGAA&UUCUUU-CCUUUCUUCUUCUUC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN629_c0_g1_275_TPlot.pdf
TRINITY_DN629_c0_g1:276	si_s82	TRINITY_DN629_c0_g1	265	286	276	-28.90	-20.90	0.72318339100346	5	2-7,285-280;9-21,277-265	1-1,286-286[UP5];8-8,279-278[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	AAGAAGAAGAAAGAUAAAGAAG&UUUCUUU-CCUUUCUUCUUCUU	3	0.999999999999912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN629_c0_g1_276_TPlot.pdf
TRINITY_DN629_c0_g1:277	si_s81	TRINITY_DN629_c0_g1	266	287	277	-28.90	-21.50	0.743944636678201	5	1-8,287-280;10-21,277-266	9-9,279-278[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	AGAAGAAGAAAGAUAAAGAAGA&UUUUCUUU-CCUUUCUUCUUCU	3	0.999999999281328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN629_c0_g1_277_TPlot.pdf
TRINITY_DN629_c0_g1:278	si_s80	TRINITY_DN629_c0_g1	267	288	278	-28.20	-20.30	0.719858156028369	6	2-9,287-280;11-21,277-267	1-1,288-288[UP5];10-10,279-278[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GAAGAAGAAAGAUAAAGAAGAC&UUUUUCUUU-CCUUUCUUCUUC	2	0.999999999435658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN629_c0_g1_278_TPlot.pdf
TRINITY_DN629_c0_g1:280	si_s79	TRINITY_DN629_c0_g1	268	289	280	-26.20	-17.10	0.652671755725191	8	3-10,287-280;12-21,277-268	1-2,289-288[UP5];11-11,279-278[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	AAGAAGAAAGAUAAAGAAGACA&UUUUUUCUUU-CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN629_c0_g1_280_TPlot.pdf
TRINITY_DN629_c0_g1:2982	si_s693	TRINITY_DN629_c0_g1	2971	2990	2982	-23.90	-17.00	0.711297071129707	7.5	1-8,2990-2983;10-17,2982-2975	9-9,x-x[BULq];18-21,2974-2971[UP3]	....((((((((-((((((((&)))))))).))))))))....	AUCAGAAUCGAC-AGUUAAAC&GUUUAAUUAGUCGAUUUAUUA	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN629_c0_g1_2982_TPlot.pdf
TRINITY_DN629_c0_g1:2983	si_s692	TRINITY_DN629_c0_g1	2972	2991	2983	-24.20	-17.10	0.706611570247934	7.5	2-9,2990-2983;11-18,2982-2975	1-1,2991-2991[UP5];10-10,x-x[BULq];19-21,2974-2972[UP3]	...((((((((-((((((((.&.)))))))).))))))))...	UCAGAAUCGAC-AGUUAAACA&AGUUUAAUUAGUCGAUUUAUU	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN629_c0_g1_2983_TPlot.pdf
TRINITY_DN629_c0_g1:3204	si_s74	TRINITY_DN629_c0_g1	3186	3213	3204	-25.00	-16.40	0.656	10.5	1-3,3213-3211;5-15,3209-3199;16-21,3191-3186	4-4,3210-3210[SIL];x-x,3198-3192[BULt]	((((((.......(((((((((((.(((&))).)))))))))))-------))))))	GAGAGGUUGAUGAAAAGAAAAAGAUUAG&CUAUUUUUUUUCUUU-------CCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN629_c0_g1_3204_TPlot.pdf
TRINITY_DN629_c0_g1:3475	si_a398	TRINITY_DN629_c0_g1	3464	3483	3475	-22.40	-14.60	0.651785714285714	8.5	2-7,3482-3477;10-20,3475-3465	1-1,3483-3483[UP5];8-9,3476-3476[AILq];21-21,3464-3464[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	AAAACAGAACAAC-CUGUGUC&AAUAUAGAAUUGUUUUGUUUA	4	0.999999999998649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN629_c0_g1_3475_TPlot.pdf
TRINITY_DN629_c0_g1:3863	si_s82	TRINITY_DN629_c0_g1	3852	3872	3863	-28.90	-21.00	0.726643598615917	6	1-8,3872-3865;11-19,3862-3854	9-10,3864-3863[SIL];20-21,3853-3852[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UCGAAGAAGAAUUGAAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	0.999999999999743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN629_c0_g1_3863_TPlot.pdf
TRINITY_DN629_c0_g1:3972	si_s78	TRINITY_DN629_c0_g1	3960	3981	3972	-26.20	-18.40	0.702290076335878	5	1-12,3981-3970;14-20,3967-3961	13-13,3969-3968[AILt];21-21,3960-3960[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	CGAAGAAACUGAAAGAGAAAAA&UUUUUUUCUUUC-CUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN629_c0_g1_3972_TPlot.pdf
TRINITY_DN629_c0_g1:3981	si_s69	TRINITY_DN629_c0_g1	3970	3991	3981	-23.40	-15.50	0.662393162393162	9.5	4-7,3988-3985;8-21,3983-3970	1-3,3991-3989[UP5];x-x,3984-3984[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	GAAAGAGAAAAAGUCAGGACUU&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN629_c0_g1_3981_TPlot.pdf
TRINITY_DN629_c0_g1:4042	si_a409	TRINITY_DN629_c0_g1	4031	4051	4042	-19.50	-12.70	0.651282051282051	9.5	1-10,4051-4042;13-16,4039-4036	11-12,4041-4040[SIL];17-21,4035-4031[UP3]	.....((((..((((((((((&))))))))))..)))).....	UCUGAUGAAGUUAAACAAAAC&GUUUUGUUUAUAUUUAAAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN629_c0_g1_4042_TPlot.pdf
TRINITY_DN629_c0_g1:4046	si_a405	TRINITY_DN629_c0_g1	4035	4055	4046	-19.80	-13.70	0.691919191919192	8.5	4-14,4052-4042;17-20,4039-4036	1-3,4055-4053[UP5];15-16,4041-4040[SIL];21-21,4035-4035[UP3]	.((((..(((((((((((...&...)))))))))))..)))).	AUGAAGUUAAACAAAACAUGG&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN629_c0_g1_4046_TPlot.pdf
TRINITY_DN629_c0_g1:4493	si_s76	TRINITY_DN629_c0_g1	4478	4502	4493	-23.60	-16.60	0.703389830508475	14.5	3-12,4500-4491;13-21,4486-4478	1-2,4502-4501[UP5];x-x,4490-4487[BULt]	(((((((((....((((((((((..&..))))))))))----)))))))))	AAGAAGGGAUCCGAAGAAAGGGAUA&AUUUUUUUUCUU----UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN629_c0_g1_4493_TPlot.pdf
TRINITY_DN629_c0_g1:453	si_a79	TRINITY_DN629_c0_g1	441	464	453	-22.20	-14.50	0.653153153153153	8	1-5,464-460;6-15,457-448;16-20,446-442	x-x,459-458[BULt];x-x,447-447[BULt];21-21,441-441[UP3]	.(((((.((((((((((..(((((&)))))--))))))))))-))))).	CUUCUUAAAUAAUGAAGUUGACAA&UUGUU--UUUCAUUAUU-AAGAAA	2	0.999994357653408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN629_c0_g1_453_TPlot.pdf
TRINITY_DN629_c0_g1:4995	si_s81	TRINITY_DN629_c0_g1	4978	5004	4995	-28.90	-19.10	0.660899653979239	10	1-10,5004-4995;11-15,4993-4989;16-20,4983-4979	x-x,4994-4994[BULt];x-x,4988-4984[BULt];21-21,4978-4978[UP3]	.(((((.....(((((.((((((((((&))))))))))-)))))-----))))).	UGAAGACGAAAAGAAACGGGAAGAGAA&UUUUCUUUCC-UUUCU-----UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN629_c0_g1_4995_TPlot.pdf
TRINITY_DN629_c0_g1:4996	si_s80	TRINITY_DN629_c0_g1	4979	5005	4996	-28.20	-19.60	0.695035460992908	9	1-11,5005-4995;12-16,4993-4989;17-21,4983-4979	x-x,4994-4994[BULt];x-x,4988-4984[BULt]	(((((.....(((((.(((((((((((&)))))))))))-)))))-----)))))	GAAGACGAAAAGAAACGGGAAGAGAAA&UUUUUCUUUCC-UUUCU-----UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN629_c0_g1_4996_TPlot.pdf
TRINITY_DN629_c0_g1:4997	si_s79	TRINITY_DN629_c0_g1	4985	5006	4997	-26.20	-17.50	0.66793893129771	7.5	1-12,5006-4995;13-18,4993-4988	x-x,4994-4994[BULt];19-21,4987-4985[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	GAAAAGAAACGGGAAGAGAAAG&UUUUUUCUUUCC-UUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN629_c0_g1_4997_TPlot.pdf
TRINITY_DN629_c0_g1:4998	si_s899	TRINITY_DN629_c0_g1	4986	5007	4998	-28.30	-19.40	0.685512367491166	9	1-11,5007-4997;14-17,4993-4990	12-13,4996-4994[AILt];18-21,4989-4986[UP3]	....((((...(((((((((((&)))))))))))-..))))....	AAAAGAAACGGGAAGAGAAAGC&GCUUUCUCUUC-AAUUUCAAUU	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN629_c0_g1_4998_TPlot.pdf
TRINITY_DN629_c0_g1:4999	si_s898	TRINITY_DN629_c0_g1	4987	5008	4999	-30.70	-20.50	0.667752442996743	7.5	1-12,5008-4997;15-18,4993-4990	13-14,4996-4994[AILt];19-21,4989-4987[UP3]	...((((...((((((((((((&))))))))))))-..))))...	AAAGAAACGGGAAGAGAAAGCU&GGCUUUCUCUUC-AAUUUCAAU	3	0.999999879536454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN629_c0_g1_4999_TPlot.pdf
TRINITY_DN629_c0_g1:5000	si_s897	TRINITY_DN629_c0_g1	4988	5009	5000	-31.30	-20.50	0.654952076677316	7	2-13,5008-4997;16-19,4993-4990	1-1,5009-5009[UP5];14-15,4996-4994[AILt];20-21,4989-4988[UP3]	..((((...((((((((((((.&.))))))))))))-..))))..	AAGAAACGGGAAGAGAAAGCUG&AGGCUUUCUCUUC-AAUUUCAA	2	0.999955461198746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN629_c0_g1_5000_TPlot.pdf
TRINITY_DN629_c0_g1:5001	si_s75	TRINITY_DN629_c0_g1	4989	5010	5001	-24.00	-16.70	0.695833333333333	10.5	5-16,5006-4995;17-21,4993-4989	1-4,5010-5007[UP5];x-x,4994-4994[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	AGAAACGGGAAGAGAAAGCUGC&UAUUUUUUUUCUUUCC-UUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN629_c0_g1_5001_TPlot.pdf
TRINITY_DN629_c0_g1:5003	si_s894	TRINITY_DN629_c0_g1	4992	5012	5003	-29.10	-19.00	0.652920962199313	13	5-16,5008-4997	1-4,5012-5009[UP5];17-21,4996-4992[UP3]	.....((((((((((((....&....)))))))))))).....	AACGGGAAGAGAAAGCUGCUA&AAUAGGCUUUCUCUUCAAUUU	3	0.999999999890631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN629_c0_g1_5003_TPlot.pdf
TRINITY_DN629_c0_g1:5004	si_s893	TRINITY_DN629_c0_g1	4993	5013	5004	-29.10	-19.00	0.652920962199313	14	6-17,5008-4997	1-5,5013-5009[UP5];18-21,4996-4993[UP3]	....((((((((((((.....&.....))))))))))))....	ACGGGAAGAGAAAGCUGCUAA&AAAUAGGCUUUCUCUUCAAUU	3	0.999999999413034	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN629_c0_g1_5004_TPlot.pdf
TRINITY_DN629_c0_g1:5051	si_s76	TRINITY_DN629_c0_g1	5039	5065	5051	-23.60	-15.50	0.656779661016949	14	1-8,5065-5058;9-15,5052-5046;16-21,5044-5039	x-x,5057-5053[BULt];x-x,5045-5045[BULt]	((((((.(((((((.....((((((((&))))))))-----)))))))-))))))	AAGAAACGGAAAGACAAACGAAAGGAU&AUUUUUUU-----UCUUUCC-UUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN629_c0_g1_5051_TPlot.pdf
TRINITY_DN629_c0_g1:5052	si_s75	TRINITY_DN629_c0_g1	5040	5066	5052	-24.00	-15.90	0.6625	14	1-9,5066-5058;10-16,5052-5046;17-21,5044-5040	x-x,5057-5053[BULt];x-x,5045-5045[BULt]	(((((.(((((((.....(((((((((&)))))))))-----)))))))-)))))	AGAAACGGAAAGACAAACGAAAGGAUA&UAUUUUUUU-----UCUUUCC-UUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN629_c0_g1_5052_TPlot.pdf
TRINITY_DN629_c0_g1:5193	si_a174	TRINITY_DN629_c0_g1	5182	5202	5193	-34.40	-22.48	0.653488372093023	7	1-9,5202-5194;12-13,5191-5190;17-21,5186-5182	10-11,5193-5192[SIL];14-16,5189-5187[SIL]	(((((...((..(((((((((&)))))))))..))...)))))	AGAUAACUUCCUGACGGGUGA&UCACCCGUCUAGAUAAUAUCU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN629_c0_g1_5193_TPlot.pdf
TRINITY_DN629_c0_g1:5194	si_a173	TRINITY_DN629_c0_g1	5183	5203	5194	-33.80	-22.18	0.656213017751479	7	1-10,5203-5194;13-14,5191-5190;18-21,5186-5183	11-12,5193-5192[SIL];15-17,5189-5187[SIL]	((((...((..((((((((((&))))))))))..))...))))	GAUAACUUCCUGACGGGUGAA&UUCACCCGUCUAGAUAAUAUC	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN629_c0_g1_5194_TPlot.pdf
TRINITY_DN629_c0_g1:5354	si_a69	TRINITY_DN629_c0_g1	5343	5365	5354	-24.00	-15.86	0.660833333333333	12	1-8,5365-5358;12-19,5352-5345	9-11,5357-5353[AILt];20-21,5344-5343[UP3]	..((((((((.....((((((((&))))))))--...))))))))..	CAGAAAAACACUUUGUGAAAGAA&UUCUUUCA--AAUUGUUUUUCAU	2	0.999999961634845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN629_c0_g1_5354_TPlot.pdf
TRINITY_DN629_c0_g1:5355	si_a68	TRINITY_DN629_c0_g1	5344	5366	5355	-25.40	-19.06	0.750393700787402	11	1-9,5366-5358;13-20,5352-5345	10-12,5357-5353[AILt];21-21,5344-5344[UP3]	.((((((((.....(((((((((&)))))))))--...)))))))).	AGAAAAACACUUUGUGAAAGAAG&CUUCUUUCA--AAUUGUUUUUCA	2	0.896190634671002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN629_c0_g1_5355_TPlot.pdf
TRINITY_DN629_c0_g1:5358	si_a67	TRINITY_DN629_c0_g1	5345	5367	5358	-27.20	-18.56	0.682352941176471	10	2-10,5366-5358;14-21,5352-5345	1-1,5367-5367[UP5];11-13,5357-5353[AILt]	((((((((.....(((((((((.&.)))))))))--...))))))))	GAAAAACACUUUGUGAAAGAAGG&GCUUCUUUCA--AAUUGUUUUUC	2	0.999957093544132	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN629_c0_g1_5358_TPlot.pdf
TRINITY_DN629_c0_g1:5421	si_a67	TRINITY_DN629_c0_g1	5410	5430	5421	-27.20	-17.70	0.650735294117647	6.5	1-6,5430-5425;8-10,5423-5421;12-12,5419-5419;14-21,5417-5410	7-7,5424-5424[SIL];11-11,5420-5420[SIL];13-13,5418-5418[SIL]	((((((((.(.(((.((((((&)))))).))).).))))))))	GAAAAACGUUAUGGUAGAAGC&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN629_c0_g1_5421_TPlot.pdf
TRINITY_DN629_c0_g1:5517	si_s814	TRINITY_DN629_c0_g1	5506	5526	5517	-26.60	-17.70	0.665413533834586	10	1-13,5526-5514	14-21,5513-5506[UP3]	........(((((((((((((&)))))))))))))........	AAUUAAAAAGGAGAAGGUAAC&GUUACCUUUUCUUAAUAAUGA	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN629_c0_g1_5517_TPlot.pdf
TRINITY_DN629_c0_g1:5518	si_s813	TRINITY_DN629_c0_g1	5507	5527	5518	-27.10	-17.80	0.656826568265683	9.5	2-14,5526-5514	1-1,5527-5527[UP5];15-21,5513-5507[UP3]	.......(((((((((((((.&.))))))))))))).......	AUUAAAAAGGAGAAGGUAACA&CGUUACCUUUUCUUAAUAAUG	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN629_c0_g1_5518_TPlot.pdf
TRINITY_DN629_c0_g1:5519	si_s812	TRINITY_DN629_c0_g1	5508	5528	5519	-26.40	-17.80	0.674242424242424	10.5	3-15,5526-5514	1-2,5528-5527[UP5];16-21,5513-5508[UP3]	......(((((((((((((..&..)))))))))))))......	UUAAAAAGGAGAAGGUAACAA&UCGUUACCUUUUCUUAAUAAU	3	0.999775402880348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN629_c0_g1_5519_TPlot.pdf
TRINITY_DN629_c0_g1:5520	si_s811	TRINITY_DN629_c0_g1	5509	5529	5520	-26.40	-17.80	0.674242424242424	11.5	4-16,5526-5514	1-3,5529-5527[UP5];17-21,5513-5509[UP3]	.....(((((((((((((...&...))))))))))))).....	UAAAAAGGAGAAGGUAACAAA&UUCGUUACCUUUUCUUAAUAA	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN629_c0_g1_5520_TPlot.pdf
TRINITY_DN629_c0_g1:5521	si_s810	TRINITY_DN629_c0_g1	5510	5530	5521	-27.90	-19.20	0.688172043010753	7	1-3,5530-5528;5-17,5526-5514	4-4,5527-5527[SIL];18-21,5513-5510[UP3]	....(((((((((((((.(((&))).)))))))))))))....	AAAAAGGAGAAGGUAACAAAG&CUUCGUUACCUUUUCUUAAUA	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN629_c0_g1_5521_TPlot.pdf
TRINITY_DN629_c0_g1:5523	si_s808	TRINITY_DN629_c0_g1	5512	5532	5523	-28.60	-20.80	0.727272727272727	6	2-5,5531-5528;7-19,5526-5514	1-1,5532-5532[UP5];6-6,5527-5527[SIL];20-21,5513-5512[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AAAGGAGAAGGUAACAAAGAA&AUCUUCGUUACCUUUUCUUAA	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN629_c0_g1_5523_TPlot.pdf
TRINITY_DN629_c0_g1:5524	si_s807	TRINITY_DN629_c0_g1	5513	5533	5524	-28.90	-20.80	0.719723183391003	7	3-6,5531-5528;8-20,5526-5514	1-2,5533-5532[UP5];7-7,5527-5527[SIL];21-21,5513-5513[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	AAGGAGAAGGUAACAAAGAAU&UAUCUUCGUUACCUUUUCUUA	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN629_c0_g1_5524_TPlot.pdf
TRINITY_DN629_c0_g1:5525	si_s806	TRINITY_DN629_c0_g1	5514	5534	5525	-28.60	-20.50	0.716783216783217	8	4-7,5531-5528;9-21,5526-5514	1-3,5534-5532[UP5];8-8,5527-5527[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AGGAGAAGGUAACAAAGAAUG&UUAUCUUCGUUACCUUUUCUU	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN629_c0_g1_5525_TPlot.pdf
TRINITY_DN629_c0_g1:5526	si_s805	TRINITY_DN629_c0_g1	5515	5535	5526	-28.60	-19.70	0.688811188811189	10	5-8,5531-5528;10-21,5526-5515	1-4,5535-5532[UP5];9-9,5527-5527[SIL]	((((((((((((.((((....&....)))).))))))))))))	GGAGAAGGUAACAAAGAAUGA&UUUAUCUUCGUUACCUUUUCU	3	0.999998109659432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN629_c0_g1_5526_TPlot.pdf
TRINITY_DN629_c0_g1:5527	si_s804	TRINITY_DN629_c0_g1	5516	5536	5527	-27.90	-18.60	0.666666666666667	11.5	6-9,5531-5528;11-21,5526-5516	1-5,5536-5532[UP5];10-10,5527-5527[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	GAGAAGGUAACAAAGAAUGAC&UUUUAUCUUCGUUACCUUUUC	2	0.999999094514339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN629_c0_g1_5527_TPlot.pdf
TRINITY_DN629_c0_g1:641	si_s83	TRINITY_DN629_c0_g1	630	651	641	-30.90	-20.70	0.669902912621359	5	1-6,651-646;8-20,643-631	7-7,645-644[AILt];21-21,630-630[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	AAAGAAGAAGAAAGAUAAAGAA&UUCUUU-CCUUUCUUCUUCUUC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN629_c0_g1_641_TPlot.pdf
TRINITY_DN629_c0_g1:642	si_s82	TRINITY_DN629_c0_g1	631	652	642	-28.90	-20.90	0.72318339100346	5	2-7,651-646;9-21,643-631	1-1,652-652[UP5];8-8,645-644[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	AAGAAGAAGAAAGAUAAAGAAG&UUUCUUU-CCUUUCUUCUUCUU	3	0.999999999999927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN629_c0_g1_642_TPlot.pdf
TRINITY_DN629_c0_g1:643	si_s81	TRINITY_DN629_c0_g1	632	653	643	-28.90	-21.50	0.743944636678201	5	1-8,653-646;10-21,643-632	9-9,645-644[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	AGAAGAAGAAAGAUAAAGAAGA&UUUUCUUU-CCUUUCUUCUUCU	3	0.999999999102074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN629_c0_g1_643_TPlot.pdf
TRINITY_DN629_c0_g1:644	si_s80	TRINITY_DN629_c0_g1	633	654	644	-28.20	-20.30	0.719858156028369	6	2-9,653-646;11-21,643-633	1-1,654-654[UP5];10-10,645-644[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GAAGAAGAAAGAUAAAGAAGAC&UUUUUCUUU-CCUUUCUUCUUC	2	0.999999998472554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN629_c0_g1_644_TPlot.pdf
TRINITY_DN629_c0_g1:646	si_s79	TRINITY_DN629_c0_g1	634	655	646	-26.20	-17.10	0.652671755725191	8	3-10,653-646;12-21,643-634	1-2,655-654[UP5];11-11,645-644[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	AAGAAGAAAGAUAAAGAAGACA&UUUUUUCUUU-CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN629_c0_g1_646_TPlot.pdf
TRINITY_DN629_c0_g1:6548	si_s509	TRINITY_DN629_c0_g1	6537	6558	6548	-22.80	-15.70	0.68859649122807	7	2-9,6557-6550;10-17,6548-6541	1-1,6558-6558[UP5];x-x,6549-6549[BULt];18-21,6540-6537[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	CUGGAAGAAUAUCAGAAUUGUC&AACAAUUCU-AUAUUCUUAAUU	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN629_c0_g1_6548_TPlot.pdf
TRINITY_DN629_c0_g1:6550	si_s508	TRINITY_DN629_c0_g1	6538	6559	6550	-22.80	-15.70	0.68859649122807	8	3-10,6557-6550;11-18,6548-6541	1-2,6559-6558[UP5];x-x,6549-6549[BULt];19-21,6540-6538[UP3]	...((((((((.((((((((..&..))))))))-))))))))...	UGGAAGAAUAUCAGAAUUGUCU&AAACAAUUCU-AUAUUCUUAAU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN629_c0_g1_6550_TPlot.pdf
TRINITY_DN629_c0_g1:6551	si_s507	TRINITY_DN629_c0_g1	6539	6560	6551	-22.70	-15.70	0.691629955947136	9	4-11,6557-6550;12-19,6548-6541	1-3,6560-6558[UP5];x-x,6549-6549[BULt];20-21,6540-6539[UP3]	..((((((((.((((((((...&...))))))))-))))))))..	GGAAGAAUAUCAGAAUUGUCUU&AAAACAAUUCU-AUAUUCUUAA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN629_c0_g1_6551_TPlot.pdf
TRINITY_DN629_c0_g1:6880	si_a785	TRINITY_DN629_c0_g1	6870	6889	6880	-25.90	-17.10	0.66023166023166	5	1-8,6889-6882;10-12,6880-6878;15-21,6876-6870	9-9,6881-6881[SIL];13-14,6877-6877[AILq]	(((((((.-(((.((((((((&)))))))).)))..)))))))	GAAAAUAU-GAAUUAGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN629_c0_g1_6880_TPlot.pdf
TRINITY_DN629_c0_g1:6949	si_s134	TRINITY_DN629_c0_g1	6940	6958	6949	-30.50	-20.20	0.662295081967213	4	1-12,6958-6947;15-20,6946-6941	13-14,x-x[BULq];21-21,6940-6940[UP3]	.((((((--((((((((((((&))))))))))))..)))))).	CGGUUUU--GUUGAUUCAACU&AGUUGAAUCAAUCAAAAACCC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s134_TRINITY_DN629_c0_g1_6949_TPlot.pdf
TRINITY_DN629_c0_g1:6952	si_s131	TRINITY_DN629_c0_g1	6942	6961	6952	-26.70	-17.40	0.651685393258427	5	2-2,6960-6960;4-14,6958-6948;16-20,6947-6943	1-1,6961-6961[UP5];3-3,6959-6959[SIL];15-15,x-x[BULq];21-21,6942-6942[UP3]	.(((((-(((((((((((.(.&.).))))))))))).))))).	GUUUUG-UUGAUUCAACUGUC&AAGAGUUGAAUCAAUCAAAAA	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN629_c0_g1_6952_TPlot.pdf
TRINITY_DN629_c0_g1:7294	si_a319	TRINITY_DN629_c0_g1	7282	7302	7294	-22.40	-14.70	0.65625	6.5	1-4,7302-7299;6-10,7298-7294;11-21,7292-7282	5-5,x-x[BULq];x-x,7293-7293[BULt]	(((((((((((.(((((-((((&)))).)))))-)))))))))))	GGUGAAAAAGUCCAUGG-UAAA&UUUAUCCAUG-AUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN629_c0_g1_7294_TPlot.pdf
TRINITY_DN629_c0_g1:8717	si_a67	TRINITY_DN629_c0_g1	8706	8726	8717	-27.20	-18.16	0.667647058823529	9	1-8,8726-8719;13-21,8714-8706	9-12,8718-8715[SIL]	(((((((((....((((((((&))))))))....)))))))))	GAAAGACGAAGUAAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999912465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN629_c0_g1_8717_TPlot.pdf
TRINITY_DN629_c0_g1:8777	si_s628	TRINITY_DN629_c0_g1	8765	8786	8777	-35.40	-24.30	0.686440677966102	8.5	1-12,8786-8775;13-15,8773-8771;17-19,8769-8767	x-x,8774-8774[BULt];16-16,8770-8770[SIL];20-21,8766-8765[UP3]	..(((.(((.((((((((((((&))))))))))))-))).)))..	AUACGGCUGCCGAAGAGGUUGC&GCGAUCUUUUCG-UAGGCGUUU	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN629_c0_g1_8777_TPlot.pdf
TRINITY_DN629_c0_g1:8779	si_s626	TRINITY_DN629_c0_g1	8767	8788	8779	-36.10	-25.90	0.717451523545706	6.5	2-14,8787-8775;15-17,8773-8771;19-21,8769-8767	1-1,8788-8788[UP5];x-x,8774-8774[BULt];18-18,8770-8770[SIL]	(((.(((.(((((((((((((.&.)))))))))))))-))).)))	ACGGCUGCCGAAGAGGUUGCUA&AAGCGAUCUUUUCG-UAGGCGU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN629_c0_g1_8779_TPlot.pdf
TRINITY_DN629_c0_g1:8780	si_s625	TRINITY_DN629_c0_g1	8768	8789	8780	-37.00	-24.80	0.67027027027027	8.5	3-15,8787-8775;16-18,8773-8771;20-21,8769-8768	1-2,8789-8788[UP5];x-x,8774-8774[BULt];19-19,8770-8770[SIL]	((.(((.(((((((((((((..&..)))))))))))))-))).))	CGGCUGCCGAAGAGGUUGCUAC&CAAGCGAUCUUUUCG-UAGGCG	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN629_c0_g1_8780_TPlot.pdf
TRINITY_DN629_c0_g1:8837	si_s812	TRINITY_DN629_c0_g1	8826	8846	8837	-26.40	-18.30	0.693181818181818	10.5	1-14,8846-8833	15-21,8832-8826[UP3]	.......((((((((((((((&)))))))))))))).......	ACUAAGCGGAAAGGGUGAUGA&UCGUUACCUUUUCUUAAUAAU	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN629_c0_g1_8837_TPlot.pdf
TRINITY_DN629_c0_g1:8838	si_s811	TRINITY_DN629_c0_g1	8827	8847	8838	-26.40	-18.70	0.708333333333333	10	1-15,8847-8833	16-21,8832-8827[UP3]	......(((((((((((((((&)))))))))))))))......	CUAAGCGGAAAGGGUGAUGAG&UUCGUUACCUUUUCUUAAUAA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN629_c0_g1_8838_TPlot.pdf
TRINITY_DN629_c0_g1:8839	si_s810	TRINITY_DN629_c0_g1	8828	8848	8839	-27.90	-18.90	0.67741935483871	10.5	2-16,8847-8833	1-1,8848-8848[UP5];17-21,8832-8828[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAAGCGGAAAGGGUGAUGAGU&CUUCGUUACCUUUUCUUAAUA	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN629_c0_g1_8839_TPlot.pdf
TRINITY_DN629_c0_g1:8841	si_s808	TRINITY_DN629_c0_g1	8830	8850	8841	-28.60	-18.90	0.660839160839161	12	4-18,8847-8833	1-3,8850-8848[UP5];19-21,8832-8830[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGCGGAAAGGGUGAUGAGUUA&AUCUUCGUUACCUUUUCUUAA	4	0.999999999989789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN629_c0_g1_8841_TPlot.pdf
TRINITY_DN629_c0_g1:8842	si_s807	TRINITY_DN629_c0_g1	8831	8851	8842	-28.90	-18.90	0.653979238754325	13	5-19,8847-8833	1-4,8851-8848[UP5];20-21,8832-8831[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCGGAAAGGGUGAUGAGUUAA&UAUCUUCGUUACCUUUUCUUA	4	0.999999999999455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN629_c0_g1_8842_TPlot.pdf
TRINITY_DN629_c0_g1:8843	si_s806	TRINITY_DN629_c0_g1	8832	8852	8843	-28.60	-18.90	0.660839160839161	14	6-20,8847-8833	1-5,8852-8848[UP5];21-21,8832-8832[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGGAAAGGGUGAUGAGUUAAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999999997616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN629_c0_g1_8843_TPlot.pdf
TRINITY_DN629_c0_g1:8844	si_s805	TRINITY_DN629_c0_g1	8833	8852	8844	-28.60	-19.00	0.664335664335664	8	1-4,8852-8849;7-21,8847-8833	5-6,8848-8848[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	GGAAAGGGUGAUGAGU-UAAA&UUUAUCUUCGUUACCUUUUCU	3	0.999999999956901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN629_c0_g1_8844_TPlot.pdf
TRINITY_DN629_c0_g1:8845	si_s804	TRINITY_DN629_c0_g1	8834	8853	8845	-27.90	-18.50	0.663082437275986	7	1-5,8853-8849;8-21,8847-8834	6-7,8848-8848[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	GAAAGGGUGAUGAGU-UAAAA&UUUUAUCUUCGUUACCUUUUC	3	0.999999999977903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN629_c0_g1_8845_TPlot.pdf
TRINITY_DN62_c0_g1:2385	si_s42	TRINITY_DN62_c0_g1	2374	2394	2385	-24.90	-17.10	0.686746987951807	6	1-3,2394-2392;5-16,2390-2379;18-19,2377-2376	4-4,2391-2391[SIL];17-17,2378-2378[SIL];20-21,2375-2374[UP3]	..((.((((((((((((.(((&))).)))))))))))).))..	AAGGUGUCCAAUUAUUAUAGA&UCUUUAAUAAUUGGAUUUCAA	2	0.879468638870563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN62_c0_g1_2385_TPlot.pdf
TRINITY_DN62_c0_g1:2386	si_s41	TRINITY_DN62_c0_g1	2375	2395	2386	-25.00	-17.10	0.684	6	2-4,2394-2392;6-17,2390-2379;19-20,2377-2376	1-1,2395-2395[UP5];5-5,2391-2391[SIL];18-18,2378-2378[SIL];21-21,2375-2375[UP3]	.((.((((((((((((.(((.&.))).)))))))))))).)).	AGGUGUCCAAUUAUUAUAGAC&AUCUUUAAUAAUUGGAUUUCA	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN62_c0_g1_2386_TPlot.pdf
TRINITY_DN62_c0_g1:2387	si_s40	TRINITY_DN62_c0_g1	2376	2396	2387	-24.30	-16.60	0.683127572016461	7	3-5,2394-2392;7-18,2390-2379;20-21,2377-2376	1-2,2396-2395[UP5];6-6,2391-2391[SIL];19-19,2378-2378[SIL]	((.((((((((((((.(((..&..))).)))))))))))).))	GGUGUCCAAUUAUUAUAGACA&AAUCUUUAAUAAUUGGAUUUC	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN62_c0_g1_2387_TPlot.pdf
TRINITY_DN62_c0_g1:2388	si_s39	TRINITY_DN62_c0_g1	2377	2397	2388	-22.30	-15.70	0.704035874439462	9.5	4-6,2394-2392;8-19,2390-2379	1-3,2397-2395[UP5];7-7,2391-2391[SIL];20-21,2378-2377[UP3]	..((((((((((((.(((...&...))).))))))))))))..	GUGUCCAAUUAUUAUAGACAA&AAAUCUUUAAUAAUUGGAUUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN62_c0_g1_2388_TPlot.pdf
TRINITY_DN63013_c0_g1:25	si_s820	TRINITY_DN63013_c0_g1	14	34	25	-22.10	-14.60	0.660633484162896	5	1-16,34-19;19-20,16-15	17-18,18-17[SIL];21-21,14-14[UP3]	.((..((((((((((((((((&))))))))))))))))..)).	AGUAGUUUGUUGUUAAGAAAA&UUUUCUUAAUAAUGAAAAACA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN63013_c0_g1_25_TPlot.pdf
TRINITY_DN63013_c0_g1:472	si_s181	TRINITY_DN63013_c0_g1	461	481	472	-34.60	-23.70	0.684971098265896	10.5	3-15,479-467	1-2,481-480[UP5];16-21,466-461[UP3]	......(((((((((((((..&..)))))))))))))......	AGCUCCUGUUGCUCGGGCAAC&GAUGCCCGAGUAACGAUUAUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN63013_c0_g1_472_TPlot.pdf
TRINITY_DN63013_c0_g1:476	si_s177	TRINITY_DN63013_c0_g1	465	485	476	-35.10	-23.70	0.675213675213675	14	7-19,479-467	1-6,485-480[UP5];20-21,466-465[UP3]	..(((((((((((((......&......)))))))))))))..	CCUGUUGCUCGGGCAACGAGA&UAAAGAUGCCCGAGUAACGAU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s177_TRINITY_DN63013_c0_g1_476_TPlot.pdf
TRINITY_DN63013_c0_g1:525	si_s811	TRINITY_DN63013_c0_g1	514	534	525	-26.40	-17.80	0.674242424242424	8	1-6,534-529;8-16,527-519	7-7,528-528[SIL];17-21,518-514[UP3]	.....(((((((((.((((((&)))))).))))))))).....	GGCGAAAGAAAAGGAAGCGAA&UUCGUUACCUUUUCUUAAUAA	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN63013_c0_g1_525_TPlot.pdf
TRINITY_DN63013_c0_g1:526	si_s810	TRINITY_DN63013_c0_g1	515	535	526	-27.90	-20.70	0.741935483870968	7	1-7,535-529;9-17,527-519	8-8,528-528[SIL];18-21,518-515[UP3]	....(((((((((.(((((((&))))))).)))))))))....	GCGAAAGAAAAGGAAGCGAAG&CUUCGUUACCUUUUCUUAAUA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN63013_c0_g1_526_TPlot.pdf
TRINITY_DN6303_c0_g2:5109	si_s736	TRINITY_DN6303_c0_g2	5097	5118	5109	-35.60	-23.40	0.657303370786517	7	2-11,5117-5108;12-17,5105-5100;19-20,5099-5098	1-1,5118-5118[UP5];x-x,5107-5106[BULt];18-18,x-x[BULq];21-21,5097-5097[UP3]	.((-((((((..((((((((((.&.))))))))))--)))))).)).	CUC-AUCUAUCAUCACCCGUCUU&UAGACGGGUGA--AUAGAUUGAC	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s736_TRINITY_DN6303_c0_g2_5109_TPlot.pdf
TRINITY_DN6303_c0_g2:5110	si_s735	TRINITY_DN6303_c0_g2	5098	5119	5110	-35.50	-23.40	0.659154929577465	8	3-12,5117-5108;13-18,5105-5100;20-21,5099-5098	1-2,5119-5118[UP5];x-x,5107-5106[BULt];19-19,x-x[BULq]	((-((((((..((((((((((..&..))))))))))--)))))).))	UC-AUCUAUCAUCACCCGUCUUA&CUAGACGGGUGA--AUAGAUUGA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s735_TRINITY_DN6303_c0_g2_5110_TPlot.pdf
TRINITY_DN6303_c0_g2:5113	si_s732	TRINITY_DN6303_c0_g2	5100	5122	5113	-34.40	-22.60	0.656976744186047	11	6-15,5117-5108;16-21,5105-5100	1-5,5122-5118[UP5];x-x,5107-5106[BULt]	((((((..((((((((((.....&.....))))))))))--))))))	AUCUAUCAUCACCCGUCUUAAAA&UAUCUAGACGGGUGA--AUAGAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN6303_c0_g2_5113_TPlot.pdf
TRINITY_DN6303_c0_g2:90	si_s322	TRINITY_DN6303_c0_g2	78	99	90	-31.50	-20.60	0.653968253968254	8	1-13,99-87;14-16,85-83	x-x,86-86[BULt];17-21,82-78[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	UCUUAGUUAUGUAACAGGAGGG&CCUUCUUGUUACA-AACAUACG	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s322_TRINITY_DN6303_c0_g2_90_TPlot.pdf
TRINITY_DN6303_c0_g2:91	si_s321	TRINITY_DN6303_c0_g2	79	100	91	-31.00	-22.20	0.716129032258064	7	1-14,100-87;15-17,85-83	x-x,86-86[BULt];18-21,82-79[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	CUUAGUUAUGUAACAGGAGGGA&UCCUUCUUGUUACA-AACAUAC	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s321_TRINITY_DN6303_c0_g2_91_TPlot.pdf
TRINITY_DN6303_c0_g2:94	si_s318	TRINITY_DN6303_c0_g2	82	104	94	-32.80	-22.70	0.692073170731707	7	2-4,103-101;5-17,99-87;18-20,85-83	1-1,104-104[UP5];x-x,100-100[BULt];x-x,86-86[BULt];21-21,82-82[UP3]	.(((.(((((((((((((.(((.&.)))-)))))))))))))-))).	AGUUAUGUAACAGGAGGGAACAU&CUGU-CCUUCUUGUUACA-AACA	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN6303_c0_g2_94_TPlot.pdf
TRINITY_DN6303_c0_g2:96	si_s316	TRINITY_DN6303_c0_g2	85	113	96	-31.50	-22.40	0.711111111111111	20	1-5,113-109;6-19,100-87	x-x,108-101[BULt];20-21,86-85[UP3]	..((((((((((((((........(((((&)))))--------))))))))))))))..	UAUGUAACAGGAGGGAACAUGUAACAGAA&UUCUG--------UCCUUCUUGUUACAAA	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN6303_c0_g2_96_TPlot.pdf
TRINITY_DN6303_c0_g2:99	si_s313	TRINITY_DN6303_c0_g2	88	116	99	-30.80	-22.40	0.727272727272727	20.5	3-8,114-109;9-21,100-88	1-2,116-115[UP5];x-x,108-101[BULt]	(((((((((((((........((((((..&..))))))--------)))))))))))))	GUAACAGGAGGGAACAUGUAACAGAAUGG&AAAUUCUG--------UCCUUCUUGUUAC	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN6303_c0_g2_99_TPlot.pdf
TRINITY_DN6303_c1_g1:208	si_s801	TRINITY_DN6303_c1_g1	197	217	208	-28.20	-20.30	0.719858156028369	6.5	1-9,217-209;11-19,207-199	10-10,208-208[SIL];20-21,198-197[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AUGGUAAUGAACAUGAGAUAC&GUAUUUUAUCUUCGUUACCUU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN6303_c1_g1_208_TPlot.pdf
TRINITY_DN6303_c1_g1:209	si_s800	TRINITY_DN6303_c1_g1	198	218	209	-29.70	-20.40	0.686868686868687	6.5	2-10,217-209;12-20,207-199	1-1,218-218[UP5];11-11,208-208[SIL];21-21,198-198[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UGGUAAUGAACAUGAGAUACA&CGUAUUUUAUCUUCGUUACCU	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6303_c1_g1_209_TPlot.pdf
TRINITY_DN6303_c1_g1:210	si_s799	TRINITY_DN6303_c1_g1	199	219	210	-30.00	-20.00	0.666666666666667	7.5	3-11,217-209;13-21,207-199	1-2,219-218[UP5];12-12,208-208[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GGUAAUGAACAUGAGAUACAU&UCGUAUUUUAUCUUCGUUACC	2	0.980169554729876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN6303_c1_g1_210_TPlot.pdf
TRINITY_DN6305_c0_g1:171	si_a221	TRINITY_DN6305_c0_g1	160	179	171	-25.20	-17.00	0.674603174603175	10.5	5-7,175-173;9-20,172-161	1-4,179-176[UP5];8-8,x-x[BULq];21-21,160-160[UP3]	.((((((((((((-(((....&....))).)))))))))))).	CUGUAGAAACAUG-GUUACAG&AUUAAACUCAUGUUUCUAUAA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN6305_c0_g1_171_TPlot.pdf
TRINITY_DN6305_c0_g1:687	si_s39	TRINITY_DN6305_c0_g1	676	696	687	-22.30	-14.90	0.668161434977579	10	4-13,693-684;15-18,682-679	1-3,696-694[UP5];14-14,683-683[SIL];19-21,678-676[UP3]	...((((.((((((((((...&...)))))))))).))))...	GACUCCAUUUGUUAAAGAAGA&AAAUCUUUAAUAAUUGGAUUU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN6305_c0_g1_687_TPlot.pdf
TRINITY_DN6305_c0_g1:688	si_s38	TRINITY_DN6305_c0_g1	677	697	688	-22.70	-14.90	0.656387665198238	11	5-14,693-684;16-19,682-679	1-4,697-694[UP5];15-15,683-683[SIL];20-21,678-677[UP3]	..((((.((((((((((....&....)))))))))).))))..	ACUCCAUUUGUUAAAGAAGAU&UAAAUCUUUAAUAAUUGGAUU	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN6305_c0_g1_688_TPlot.pdf
TRINITY_DN6308_c0_g1:197	si_a345	TRINITY_DN6308_c0_g1	183	206	197	-26.90	-17.92	0.666171003717472	12	1-11,206-196;14-20,190-184	12-13,195-191[AILt];21-21,183-183[UP3]	.(((((((.....(((((((((((&)))))))))))---..))))))).	UUAGAAUUUCACUUGUUUUUGGGA&UCCCGAAAAUA---UUAAUUCUAU	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN6308_c0_g1_197_TPlot.pdf
TRINITY_DN6309_c0_g1:1073	si_s797	TRINITY_DN6309_c0_g1	1062	1081	1073	-30.00	-21.32	0.710666666666667	12	1-6,1081-1076;11-19,1072-1064	7-10,1075-1073[AILq];20-21,1063-1062[UP3]	..(((((((((...-((((((&))))))....)))))))))..	GUACGAGGGUAUCG-GCGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN6309_c0_g1_1073_TPlot.pdf
TRINITY_DN6309_c0_g1:1074	si_s796	TRINITY_DN6309_c0_g1	1063	1082	1074	-30.30	-21.32	0.703630363036304	12	2-7,1081-1076;12-20,1072-1064	1-1,1082-1082[UP5];8-11,1075-1073[AILq];21-21,1063-1063[UP3]	.(((((((((...-((((((.&.))))))....))))))))).	UACGAGGGUAUCG-GCGAGCG&AGCUCGUAUUUUAUCUUCGUU	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN6309_c0_g1_1074_TPlot.pdf
TRINITY_DN630_c1_g1:1965	si_a24	TRINITY_DN630_c1_g1	1954	1974	1965	-24.20	-17.50	0.723140495867769	8	1-17,1974-1958	18-21,1957-1954[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAAAUAGAACUAAGGAUGAGU&AUUUAUUUUUAGUUCUAAGAC	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN630_c1_g1_1965_TPlot.pdf
TRINITY_DN630_c1_g1:2128	si_a821	TRINITY_DN630_c1_g1	2117	2137	2128	-26.20	-17.60	0.67175572519084	8	1-9,2137-2129;11-16,2127-2122	10-10,2128-2128[SIL];17-21,2121-2117[UP3]	.....((((((.(((((((((&))))))))).)))))).....	GAGCCUCUUUUGUUUCUUCUU&AAGAAGAAAGGAAAGAAAAAA	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN630_c1_g1_2128_TPlot.pdf
TRINITY_DN630_c1_g1:2132	si_a817	TRINITY_DN630_c1_g1	2121	2141	2132	-30.90	-20.10	0.650485436893204	4.5	1-3,2141-2139;5-13,2137-2129;15-20,2127-2122	4-4,2138-2138[SIL];14-14,2128-2128[SIL];21-21,2121-2121[UP3]	.((((((.(((((((((.(((&))).))))))))).)))))).	CUCUUUUGUUUCUUCUUAUUC&GAAGAAGAAGAAAGGAAAGAA	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN630_c1_g1_2132_TPlot.pdf
TRINITY_DN630_c1_g1:2133	si_a816	TRINITY_DN630_c1_g1	2122	2142	2133	-32.30	-21.50	0.665634674922601	3.5	1-4,2142-2139;6-14,2137-2129;16-21,2127-2122	5-5,2138-2138[SIL];15-15,2128-2128[SIL]	((((((.(((((((((.((((&)))).))))))))).))))))	UCUUUUGUUUCUUCUUAUUCG&CGAAGAAGAAGAAAGGAAAGA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN630_c1_g1_2133_TPlot.pdf
TRINITY_DN6310_c0_g1:2161	si_s76	TRINITY_DN6310_c0_g1	2150	2170	2161	-23.60	-15.80	0.669491525423729	10	4-16,2167-2155;19-19,2152-2152	1-3,2170-2168[UP5];17-18,2154-2153[SIL];20-21,2151-2150[UP3]	..(..(((((((((((((...&...)))))))))))))..)..	UUGUUAGGAAAGAGAAAAUUA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6310_c0_g1_2161_TPlot.pdf
TRINITY_DN6310_c0_g1:2162	si_s75	TRINITY_DN6310_c0_g1	2151	2171	2162	-24.00	-15.80	0.658333333333333	11	5-17,2167-2155;20-20,2152-2152	1-4,2171-2168[UP5];18-19,2154-2153[SIL];21-21,2151-2151[UP3]	.(..(((((((((((((....&....)))))))))))))..).	UGUUAGGAAAGAGAAAAUUAU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6310_c0_g1_2162_TPlot.pdf
TRINITY_DN6310_c0_g1:2166	si_s71	TRINITY_DN6310_c0_g1	2155	2176	2166	-25.70	-18.00	0.700389105058366	6.5	1-4,2176-2173;6-7,2171-2170;9-21,2167-2155	5-5,2172-2172[SIL];8-8,2169-2168[AILt]	(((((((((((((..((.((((&)))).))-.)))))))))))))	AGGAAAGAGAAAAUUAUCGAAG&CUUCUAU-UUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6310_c0_g1_2166_TPlot.pdf
TRINITY_DN6310_c0_g1:2250	si_s81	TRINITY_DN6310_c0_g1	2240	2259	2250	-28.90	-18.80	0.650519031141869	8.5	3-15,2257-2245;17-19,2244-2242	1-2,2259-2258[UP5];16-16,x-x[BULq];20-21,2241-2240[UP3]	..(((-(((((((((((((..&..))))))))))))).)))..	AUGAG-AGAGGGGAAAGAAUG&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6310_c0_g1_2250_TPlot.pdf
TRINITY_DN6310_c0_g1:2251	si_s80	TRINITY_DN6310_c0_g1	2241	2260	2251	-28.20	-18.80	0.666666666666667	9	4-16,2257-2245;18-20,2244-2242	1-3,2260-2258[UP5];17-17,x-x[BULq];21-21,2241-2241[UP3]	.(((-(((((((((((((...&...))))))))))))).))).	UGAG-AGAGGGGAAAGAAUGU&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6310_c0_g1_2251_TPlot.pdf
TRINITY_DN6310_c0_g1:2254	si_s77	TRINITY_DN6310_c0_g1	2243	2263	2254	-25.50	-18.30	0.717647058823529	13.5	7-20,2257-2244	1-6,2263-2258[UP5];21-21,2243-2243[UP3]	.((((((((((((((......&......)))))))))))))).	AGAGAGGGGAAAGAAUGUUAG&UUUUUUUUCUUUCCUUUCUUC	2	0.999999999999483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6310_c0_g1_2254_TPlot.pdf
TRINITY_DN63110_c0_g1:57	si_s190	TRINITY_DN63110_c0_g1	47	66	57	-28.00	-18.60	0.664285714285714	10	5-17,62-50;19-21,49-47	1-4,66-63[UP5];18-18,x-x[BULq]	(((-(((((((((((((....&....))))))))))))).)))	GCA-UCCGAAAUGAUCGAAGA&GUAACGAUUAUUUUGGAAUGU	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN63110_c0_g1_57_TPlot.pdf
TRINITY_DN6311_c0_g1:167	si_s38	TRINITY_DN6311_c0_g1	157	176	167	-22.70	-14.80	0.651982378854626	10.5	4-10,173-167;12-19,166-159	1-3,176-174[UP5];11-11,x-x[BULq];20-21,158-157[UP3]	..((((((((-(((((((...&...))))))).))))))))..	CCUCCAGUUA-UGAAGAUACA&UAAAUCUUUAAUAAUUGGAUU	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN6311_c0_g1_167_TPlot.pdf
TRINITY_DN6311_c0_g1:320	si_a127	TRINITY_DN6311_c0_g1	309	329	320	-23.10	-15.40	0.666666666666667	12	4-15,326-315	1-3,329-327[UP5];16-21,314-309[UP3]	......((((((((((((...&...))))))))))))......	GGUCUCACUAUUGCUGUAUAC&UUUUAUAGCAAUAGUAAUUAA	3	0.999642220447259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN6311_c0_g1_320_TPlot.pdf
TRINITY_DN6311_c0_g1:322	si_a125	TRINITY_DN6311_c0_g1	311	330	322	-25.00	-16.50	0.66	9	1-3,330-328;6-17,326-315	4-5,327-327[AILq];18-21,314-311[UP3]	....((((((((((((.-(((&)))..))))))))))))....	UCUCACUAUUGCUGUAU-ACA&UGUUUUAUAGCAAUAGUAAUU	2	0.990833485012825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN6311_c0_g1_322_TPlot.pdf
TRINITY_DN6311_c0_g1:323	si_a124	TRINITY_DN6311_c0_g1	312	331	323	-25.10	-16.70	0.665338645418327	9	2-4,330-328;7-18,326-315	1-1,331-331[UP5];5-6,327-327[AILq];19-21,314-312[UP3]	...((((((((((((.-(((.&.)))..))))))))))))...	CUCACUAUUGCUGUAU-ACAU&UUGUUUUAUAGCAAUAGUAAU	2	0.990833485012825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN6311_c0_g1_323_TPlot.pdf
TRINITY_DN6311_c0_g2:426	si_a783	TRINITY_DN6311_c0_g2	415	437	426	-24.70	-17.20	0.696356275303644	13	2-6,436-432;7-18,429-418	1-1,437-437[UP5];x-x,431-430[BULt];19-21,417-415[UP3]	...((((((((((((..(((((.&.)))))--))))))))))))...	UACUGGAGAGGUGGAGAGGAGUG&AACUCU--UCUAUUUUUCUAUUU	3	0.999999997427152	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN6311_c0_g2_426_TPlot.pdf
TRINITY_DN63125_c0_g1:240	si_a723	TRINITY_DN63125_c0_g1	230	253	240	-35.10	-23.20	0.660968660968661	14.5	3-5,251-249;6-14,244-236;16-21,235-230	1-2,253-252[UP5];x-x,248-245[BULt];15-15,x-x[BULq]	((((((-(((((((((....(((..&..)))----))))))))).))))))	UGAAGA-GCCCGAGUGGUCAGCGUU&AUCGU----UACUCGGGCAUCUUUA	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN63125_c0_g1_240_TPlot.pdf
TRINITY_DN63125_c0_g1:281	si_a637	TRINITY_DN63125_c0_g1	270	292	281	-25.80	-17.10	0.662790697674419	12	1-8,292-285;9-17,282-274	x-x,284-283[BULt];18-21,273-270[UP3]	....(((((((((..((((((((&))))))))--)))))))))....	GUCAUGCUCAAAGACGAGUCGAU&GUCGAUUU--UUUUGAGUAAUAU	4	0.999999999236631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN63125_c0_g1_281_TPlot.pdf
TRINITY_DN63125_c0_g1:282	si_a636	TRINITY_DN63125_c0_g1	271	293	282	-26.30	-17.90	0.680608365019011	11.5	1-9,293-285;10-18,282-274	x-x,284-283[BULt];19-21,273-271[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	UCAUGCUCAAAGACGAGUCGAUA&UGUCGAUUU--UUUUGAGUAAUA	2	0.999725898499617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN63125_c0_g1_282_TPlot.pdf
TRINITY_DN63125_c0_g1:286	si_a634	TRINITY_DN63125_c0_g1	273	295	286	-26.40	-17.90	0.678030303030303	12.5	3-11,293-285;12-20,282-274	1-2,295-294[UP5];x-x,284-283[BULt];21-21,273-273[UP3]	.(((((((((..(((((((((..&..)))))))))--))))))))).	AUGCUCAAAGACGAGUCGAUACU&UAUGUCGAUUU--UUUUGAGUAA	3	0.99999950308576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN63125_c0_g1_286_TPlot.pdf
TRINITY_DN63125_c0_g1:287	si_a633	TRINITY_DN63125_c0_g1	274	296	287	-26.40	-17.70	0.670454545454545	13	4-12,293-285;13-21,282-274	1-3,296-294[UP5];x-x,284-283[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	UGCUCAAAGACGAGUCGAUACUC&UUAUGUCGAUUU--UUUUGAGUA	4	0.999999969905976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN63125_c0_g1_287_TPlot.pdf
TRINITY_DN63125_c0_g1:327	si_a274	TRINITY_DN63125_c0_g1	317	336	327	-36.10	-23.60	0.653739612188366	10	2-10,335-327;16-21,322-317	1-1,336-336[UP5];11-15,326-323[AILq]	((((((....-(((((((((.&.))))))))).....))))))	GGGCGAAUCG-UCGUGGGCGA&ACGCCUACGAAAAGAUCGCUU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a274_TRINITY_DN63125_c0_g1_327_TPlot.pdf
TRINITY_DN6312_c0_g1:2525	si_a85	TRINITY_DN6312_c0_g1	2511	2534	2525	-25.00	-16.40	0.656	10	1-11,2534-2524;12-18,2520-2514	x-x,2523-2521[BULt];19-21,2513-2511[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	UACCCUUUUCAAUUUAAUAAUGGA&UUCAUUAUUAA---GAAAAGGUAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN6312_c0_g1_2525_TPlot.pdf
TRINITY_DN6312_c0_g1:2527	si_a83	TRINITY_DN6312_c0_g1	2513	2536	2527	-24.50	-17.50	0.714285714285714	6	2-13,2535-2524;14-20,2520-2514	1-1,2536-2536[UP5];x-x,2523-2521[BULt];21-21,2513-2513[UP3]	.(((((((...((((((((((((.&.))))))))))))---))))))).	CCCUUUUCAAUUUAAUAAUGGAAG&UUUUCAUUAUUAA---GAAAAGGU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN6312_c0_g1_2527_TPlot.pdf
TRINITY_DN6312_c0_g1:2528	si_a82	TRINITY_DN6312_c0_g1	2514	2537	2528	-23.70	-18.90	0.79746835443038	5	1-14,2537-2524;15-21,2520-2514	x-x,2523-2521[BULt]	(((((((...((((((((((((((&))))))))))))))---)))))))	CCUUUUCAAUUUAAUAAUGGAAGA&UUUUUCAUUAUUAA---GAAAAGG	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN6312_c0_g1_2528_TPlot.pdf
TRINITY_DN6312_c0_g1:2529	si_a81	TRINITY_DN6312_c0_g1	2515	2538	2529	-23.00	-15.60	0.678260869565217	6	2-15,2537-2524;16-21,2520-2515	1-1,2538-2538[UP5];x-x,2523-2521[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	CUUUUCAAUUUAAUAAUGGAAGAA&GUUUUUCAUUAUUAA---GAAAAG	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN6312_c0_g1_2529_TPlot.pdf
TRINITY_DN6312_c0_g1:400	si_s437	TRINITY_DN6312_c0_g1	389	409	400	-19.70	-14.70	0.746192893401015	9	1-4,409-406;7-19,403-391	5-6,405-404[SIL];20-21,390-389[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	UAAUAUGUGGUAUGUUUUUGU&AUAAUUACAUAUUAUAUAUAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN6312_c0_g1_400_TPlot.pdf
TRINITY_DN6312_c0_g4:106	si_a21	TRINITY_DN6312_c0_g4	95	118	106	-24.30	-16.50	0.679012345679012	14	1-4,118-115;5-18,111-98	x-x,114-112[BULt];19-21,97-95[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	AGCGGACUGGGAAUGAAAGCUGGG&CCUA---UUUAUUUUUAGUUCUAA	2	0.998159561295461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN6312_c0_g4_106_TPlot.pdf
TRINITY_DN6312_c0_g4:109	si_a327	TRINITY_DN6312_c0_g4	98	118	109	-28.40	-18.50	0.651408450704225	12.5	6-16,113-103;18-21,101-98	1-5,118-114[UP5];17-17,102-102[SIL]	((((.(((((((((((.....&.....))))))))))).))))	GGACUGGGAAUGAAAGCUGGG&UGAUUUUUUUAUUCCUUGUCC	3	0.999999999818578	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN6312_c0_g4_109_TPlot.pdf
TRINITY_DN6313_c5_g1:461	si_a183	TRINITY_DN6313_c5_g1	450	470	461	-30.10	-20.20	0.67109634551495	6	3-15,468-456;17-19,454-452	1-2,470-469[UP5];16-16,455-455[SIL];20-21,451-450[UP3]	..(((.(((((((((((((..&..))))))))))))).)))..	UCCAGAGAAAGAUAUUAUCAG&UAGAUAAUAUCUUUCCCUGUU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN6313_c5_g1_461_TPlot.pdf
TRINITY_DN6315_c0_g1:295	si_s444	TRINITY_DN6315_c0_g1	284	304	295	-22.80	-15.50	0.679824561403509	3	2-17,303-288;19-21,286-284	1-1,304-304[UP5];18-18,287-287[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	AUUUUUGUUAUGUAUAAUAUA&CAUAUUAUAUAUAACAACAAU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN6315_c0_g1_295_TPlot.pdf
TRINITY_DN63184_c0_g1:17	si_s281	TRINITY_DN63184_c0_g1	5	25	17	-35.10	-23.60	0.672364672364672	7.5	1-5,25-21;8-16,19-11;17-21,9-5	6-7,20-20[AILq];x-x,10-10[BULt]	(((((.(((((((((.-(((((&)))))..)))))))))-)))))	AUCGGUCUGGGCGUGG-AUGUU&GACAUAAUACGCCUAG-UCGAU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s281_TRINITY_DN63184_c0_g1_17_TPlot.pdf
TRINITY_DN6318_c0_g2:667	si_a533	TRINITY_DN6318_c0_g2	656	676	667	-39.40	-26.10	0.66243654822335	11	3-5,674-672;7-18,670-659	1-2,676-675[UP5];6-6,671-671[SIL];19-21,658-656[UP3]	...((((((((((((.(((..&..))).))))))))))))...	AGGGGGCCGAUUGCUGGUGGU&CACGCGAGCGAUCGGUUCAAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN6318_c0_g2_667_TPlot.pdf
TRINITY_DN6318_c0_g2:669	si_a531	TRINITY_DN6318_c0_g2	658	677	669	-42.00	-29.40	0.7	8	1-3,677-675;5-7,674-672;9-20,670-659	4-4,x-x[BULq];8-8,671-671[SIL];21-21,658-658[UP3]	.((((((((((((.(((-(((&))).))).)))))))))))).	GGGGCCGAUUGCUGGUG-GUC&GACACGCGAGCGAUCGGUUCA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a531_TRINITY_DN6318_c0_g2_669_TPlot.pdf
TRINITY_DN6318_c0_g2:672	si_a528	TRINITY_DN6318_c0_g2	661	680	672	-45.70	-29.80	0.652078774617068	9	3-6,678-675;8-10,674-672;12-21,670-661	1-2,680-679[UP5];7-7,x-x[BULq];11-11,671-671[SIL]	((((((((((.(((-((((..&..)))).))).))))))))))	GCCGAUUGCUGGUG-GUCCCC&GCGGACACGCGAGCGAUCGGU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a528_TRINITY_DN6318_c0_g2_672_TPlot.pdf
TRINITY_DN6318_c0_g2:708	si_a334	TRINITY_DN6318_c0_g2	697	717	708	-30.70	-20.20	0.657980456026059	12	3-9,715-709;12-18,706-700	1-2,717-716[UP5];10-11,708-707[SIL];19-21,699-697[UP3]	...(((((((..(((((((..&..)))))))..)))))))...	UGCUUCGGGAAUAGGGAUGCU&UUUAUUCCUUGUCCCGAAAAU	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN6318_c0_g2_708_TPlot.pdf
TRINITY_DN6318_c0_g2:709	si_a333	TRINITY_DN6318_c0_g2	698	718	709	-30.60	-20.20	0.660130718954248	13	4-10,715-709;13-19,706-700	1-3,718-716[UP5];11-12,708-707[SIL];20-21,699-698[UP3]	..(((((((..(((((((...&...)))))))..)))))))..	GCUUCGGGAAUAGGGAUGCUG&UUUUAUUCCUUGUCCCGAAAA	3	0.999961406174381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN6318_c0_g2_709_TPlot.pdf
TRINITY_DN6318_c0_g2:710	si_a332	TRINITY_DN6318_c0_g2	699	719	710	-30.60	-20.20	0.660130718954248	13	5-11,715-709;14-20,706-700	1-4,719-716[UP5];12-13,708-707[SIL];21-21,699-699[UP3]	.(((((((..(((((((....&....)))))))..))))))).	CUUCGGGAAUAGGGAUGCUGC&UUUUUAUUCCUUGUCCCGAAA	4	0.999994646216814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN6318_c0_g2_710_TPlot.pdf
TRINITY_DN6318_c0_g2:844	si_a316	TRINITY_DN6318_c0_g2	834	852	844	-26.30	-17.80	0.67680608365019	6	1-6,852-847;8-11,846-843;13-21,842-834	7-7,x-x[BULq];12-12,x-x[BULq]	(((((((((-((((-((((((&)))))).)))).)))))))))	GGGAGAAUC-UGGA-AAAUCC&GGAUUUAUCCAUGAUUUUUUU	4	0.999995906285367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN6318_c0_g2_844_TPlot.pdf
TRINITY_DN6318_c0_g2:845	si_a315	TRINITY_DN6318_c0_g2	835	853	845	-27.00	-18.20	0.674074074074074	4.5	1-7,853-847;9-12,846-843;14-21,842-835	8-8,x-x[BULq];13-13,x-x[BULq]	((((((((-((((-(((((((&))))))).)))).))))))))	GGAGAAUC-UGGA-AAAUCCA&UGGAUUUAUCCAUGAUUUUUU	4	0.999971501982316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN6318_c0_g2_845_TPlot.pdf
TRINITY_DN6318_c0_g2:846	si_a314	TRINITY_DN6318_c0_g2	836	854	846	-27.10	-17.80	0.656826568265683	5	2-8,853-847;10-13,846-843;15-21,842-836	1-1,854-854[UP5];9-9,x-x[BULq];14-14,x-x[BULq]	(((((((-((((-(((((((.&.))))))).)))).)))))))	GAGAAUC-UGGA-AAAUCCAC&UUGGAUUUAUCCAUGAUUUUU	2	0.999923938277612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN6318_c0_g2_846_TPlot.pdf
TRINITY_DN6319_c0_g1:860	si_a320	TRINITY_DN6319_c0_g1	849	870	860	-24.40	-17.20	0.704918032786885	6.5	1-9,870-862;10-18,860-852	x-x,861-861[BULt];19-21,851-849[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	UUUUAAAGAAAUACAUGGAUGA&UUAUCCAUG-AUUUUUUUAUUC	2	0.988095383161449	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN6319_c0_g1_860_TPlot.pdf
TRINITY_DN6319_c0_g1:864	si_a317	TRINITY_DN6319_c0_g1	852	872	864	-24.30	-17.50	0.720164609053498	5.5	1-4,872-869;6-12,868-862;13-21,860-852	5-5,x-x[BULq];x-x,861-861[BULt]	(((((((((.(((((((-((((&)))).)))))))-)))))))))	UAAAGAAAUACAUGGAU-GAUC&GAUUUAUCCAUG-AUUUUUUUA	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN6319_c0_g1_864_TPlot.pdf
TRINITY_DN631_c0_g1:410	si_a312	TRINITY_DN631_c0_g1	398	419	410	-31.20	-20.90	0.669871794871795	8	1-10,419-410;12-20,407-399	11-11,409-408[AILt];21-21,398-398[UP3]	.(((((((((..((((((((((&))))))))))-.))))))))).	CAGUUAUGGAAAGAAUUCAAGC&GCUUGGAUUU-AUCCAUGAUUU	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN631_c0_g1_410_TPlot.pdf
TRINITY_DN6320_c0_g1:1011	si_a784	TRINITY_DN6320_c0_g1	1000	1021	1011	-24.70	-18.30	0.740890688259109	5	3-5,1019-1017;6-21,1015-1000	1-2,1021-1020[UP5];x-x,1016-1016[BULt]	((((((((((((((((.(((..&..)))-))))))))))))))))	AAAAUAGAAAAAUAGAUAGAAU&ACUCU-UCUAUUUUUCUAUUUU	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6320_c0_g1_1011_TPlot.pdf
TRINITY_DN6320_c0_g1:1615	si_a769	TRINITY_DN6320_c0_g1	1602	1624	1615	-26.70	-17.50	0.655430711610487	7.5	2-10,1623-1615;11-17,1613-1607;18-21,1605-1602	1-1,1624-1624[UP5];x-x,1614-1614[BULt];x-x,1606-1606[BULt]	((((.(((((((.(((((((((.&.)))))))))-)))))))-))))	AAGGCGUUGAAUACGAUCGGAAC&UUUUUGAUUG-AUUCAAC-UCUU	4	0.999966384966176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN6320_c0_g1_1615_TPlot.pdf
TRINITY_DN6321_c0_g1:286	si_a383	TRINITY_DN6321_c0_g1	275	295	286	-24.80	-16.90	0.681451612903226	7	1-9,295-287;12-20,284-276	10-11,286-285[SIL];21-21,275-275[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	CAUAUUCUUGCCUUGAAAUCA&UGAUUUCGAAUUAAGAAUAUA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a383_TRINITY_DN6321_c0_g1_286_TPlot.pdf
TRINITY_DN6321_c0_g1:287	si_a382	TRINITY_DN6321_c0_g1	276	296	287	-24.60	-16.70	0.678861788617886	6.5	2-10,295-287;13-21,284-276	1-1,296-296[UP5];11-12,286-285[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	AUAUUCUUGCCUUGAAAUCAA&AUGAUUUCGAAUUAAGAAUAU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN6321_c0_g1_287_TPlot.pdf
TRINITY_DN6323_c0_g1:2058	si_s495	TRINITY_DN6323_c0_g1	2043	2067	2058	-19.80	-12.90	0.651515151515151	8	2-13,2066-2055;14-19,2050-2045	1-1,2067-2067[UP5];x-x,2054-2051[BULt];20-21,2044-2043[UP3]	..((((((....((((((((((((.&.))))))))))))----))))))..	UCUUGUUUCUAAUGUUUGUAUUUAU&UUAAAUAUAAACA----AAACAAUU	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN6323_c0_g1_2058_TPlot.pdf
TRINITY_DN6323_c0_g1:4668	si_a411	TRINITY_DN6323_c0_g1	4650	4677	4668	-17.90	-11.90	0.664804469273743	9.5	1-13,4677-4665;14-21,4657-4650	x-x,4664-4658[BULt]	((((((((.......(((((((((((((&)))))))))))))-------))))))))	GUUUAUUUUAUGUGCAAAUAUAGGCAAA&UUUGUUUAUAUUU-------AAAUAAAU	2	0.999998374711793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN6323_c0_g1_4668_TPlot.pdf
TRINITY_DN6323_c0_g1:4669	si_a410	TRINITY_DN6323_c0_g1	4658	4678	4669	-17.80	-11.70	0.657303370786517	7	1-14,4678-4665;17-19,4662-4660	15-16,4664-4663[SIL];20-21,4659-4658[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UAUGUGCAAAUAUAGGCAAAG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999693322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6323_c0_g1_4669_TPlot.pdf
TRINITY_DN6323_c0_g1:4675	si_a404	TRINITY_DN6323_c0_g1	4664	4684	4675	-21.70	-14.20	0.654377880184332	12.5	6-20,4679-4665	1-5,4684-4680[UP5];21-21,4664-4664[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAAAUAUAGGCAAAGCCUCUU&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6323_c0_g1_4675_TPlot.pdf
TRINITY_DN6323_c0_g1:6607	si_a895	TRINITY_DN6323_c0_g1	6596	6616	6607	-21.70	-16.30	0.751152073732719	3.5	1-19,6616-6598	20-21,6597-6596[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUAUUAUUUAUUAUUAUUAU&AUAGUAAUAAUAAGUAAUAUA	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN6323_c0_g1_6607_TPlot.pdf
TRINITY_DN6323_c0_g1:6860	si_a452	TRINITY_DN6323_c0_g1	6849	6869	6860	-23.00	-15.70	0.682608695652174	7.5	2-17,6868-6853	1-1,6869-6869[UP5];18-21,6852-6849[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAUCGUAUAACAAUAAUUGUA&GAUAAUUGUUGUUAUAUAUAA	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN6323_c0_g1_6860_TPlot.pdf
TRINITY_DN6325_c0_g1:81	si_s356	TRINITY_DN6325_c0_g1	69	90	81	-28.90	-20.00	0.69204152249135	9	5-14,86-77;15-21,75-69	1-4,90-87[UP5];x-x,76-76[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	UCGGUUCAAAUUUAUUUCAAUA&UAAAGAAAUAGAUU-GAACCGA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s356_TRINITY_DN6325_c0_g1_81_TPlot.pdf
TRINITY_DN6326_c0_g1:10764	si_s31	TRINITY_DN6326_c0_g1	10753	10773	10764	-24.80	-16.30	0.657258064516129	4	1-12,10773-10762;14-18,10760-10756	13-13,10761-10761[SIL];19-21,10755-10753[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	CGCUUAAAAAUUUAGUUGCAA&UUGCAACUAAAUCUUUAAUAA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN6326_c0_g1_10764_TPlot.pdf
TRINITY_DN6326_c0_g1:10766	si_s29	TRINITY_DN6326_c0_g1	10755	10775	10766	-26.40	-18.60	0.704545454545455	2.5	1-14,10775-10762;16-20,10760-10756	15-15,10761-10761[SIL];21-21,10755-10755[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	CUUAAAAAUUUAGUUGCAAUU&GAUUGCAACUAAAUCUUUAAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN6326_c0_g1_10766_TPlot.pdf
TRINITY_DN6326_c0_g1:140	si_s591	TRINITY_DN6326_c0_g1	129	151	140	-33.60	-21.86	0.650595238095238	13.5	1-8,151-144;12-19,138-131	9-11,143-139[AILt];20-21,130-129[UP3]	..((((((((.....((((((((&))))))))--...))))))))..	GCUGCUUGGGCAAAGAUCCAUGA&UCAUGGAU--AAAUCCAAGCGAA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s591_TRINITY_DN6326_c0_g1_140_TPlot.pdf
TRINITY_DN6326_c0_g1:144	si_s589	TRINITY_DN6326_c0_g1	131	153	144	-32.70	-21.56	0.659327217125382	13	3-10,151-144;14-21,138-131	1-2,153-152[UP5];11-13,143-139[AILt]	((((((((.....((((((((..&..))))))))--...))))))))	UGCUUGGGCAAAGAUCCAUGACU&AAUCAUGGAU--AAAUCCAAGCG	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s589_TRINITY_DN6326_c0_g1_144_TPlot.pdf
TRINITY_DN6326_c0_g1:145	si_s588	TRINITY_DN6326_c0_g1	132	154	145	-31.20	-20.76	0.665384615384615	13.5	4-11,151-144;15-21,138-132	1-3,154-152[UP5];12-14,143-139[AILt]	(((((((.....((((((((...&...))))))))--...)))))))	GCUUGGGCAAAGAUCCAUGACUC&AAAUCAUGGAU--AAAUCCAAGC	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s588_TRINITY_DN6326_c0_g1_145_TPlot.pdf
TRINITY_DN6326_c0_g1:5691	si_s691	TRINITY_DN6326_c0_g1	5680	5700	5691	-26.20	-17.10	0.652671755725191	10.5	1-6,5700-5695;9-18,5692-5683	7-8,5694-5693[SIL];19-21,5682-5680[UP3]	...((((((((((..((((((&))))))..))))))))))...	CAUAGUCGACUGGAAAGACUC&GAGUUUAAUUAGUCGAUUUAU	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN6326_c0_g1_5691_TPlot.pdf
TRINITY_DN6326_c0_g2:1125	si_s64	TRINITY_DN6326_c0_g2	1114	1134	1125	-24.10	-15.80	0.655601659751037	11	2-12,1133-1123	1-1,1134-1134[UP5];13-21,1122-1114[UP3]	.........(((((((((((.&.))))))))))).........	ACGAUUAUGAGAAGUUGCUGU&UUAGCAACUUCUAUUUUUUUU	4	0.999999999999913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6326_c0_g2_1125_TPlot.pdf
TRINITY_DN6326_c0_g2:1396	si_s200	TRINITY_DN6326_c0_g2	1385	1407	1396	-32.80	-21.40	0.652439024390244	12	3-8,1405-1400;10-21,1396-1385	1-2,1407-1406[UP5];9-9,1399-1397[AILt]	((((((((((((...((((((..&..))))))--.))))))))))))	CGCAGCUGGUAUUCUUUCUAACU&UUUUGGAA--UGUACCAGUUGUG	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s200_TRINITY_DN6326_c0_g2_1396_TPlot.pdf
TRINITY_DN6326_c0_g2:1857	si_s642	TRINITY_DN6326_c0_g2	1846	1871	1857	-38.60	-25.20	0.652849740932642	18	1-6,1871-1866;7-16,1860-1851	x-x,1865-1861[BULt];17-21,1850-1846[UP3]	.....((((((((((.....((((((&))))))-----)))))))))).....	AAAUAGUUGAGGGCACUGUCGGCGCC&GGCGUU-----UGCCCUCGAUACAAU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s642_TRINITY_DN6326_c0_g2_1857_TPlot.pdf
TRINITY_DN6326_c0_g2:1858	si_s641	TRINITY_DN6326_c0_g2	1847	1872	1858	-39.20	-26.30	0.670918367346939	17	1-7,1872-1866;8-17,1860-1851	x-x,1865-1861[BULt];18-21,1850-1847[UP3]	....((((((((((.....(((((((&)))))))-----))))))))))....	AAUAGUUGAGGGCACUGUCGGCGCCU&AGGCGUU-----UGCCCUCGAUACAA	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN6326_c0_g2_1858_TPlot.pdf
TRINITY_DN6326_c0_g2:1859	si_s640	TRINITY_DN6326_c0_g2	1848	1873	1859	-39.50	-26.30	0.665822784810127	17	2-8,1872-1866;9-18,1860-1851	1-1,1873-1873[UP5];x-x,1865-1861[BULt];19-21,1850-1848[UP3]	...((((((((((.....(((((((.&.)))))))-----))))))))))...	AUAGUUGAGGGCACUGUCGGCGCCUU&UAGGCGUU-----UGCCCUCGAUACA	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s640_TRINITY_DN6326_c0_g2_1859_TPlot.pdf
TRINITY_DN6326_c0_g2:2330	si_a150	TRINITY_DN6326_c0_g2	2319	2340	2330	-29.90	-19.50	0.652173913043478	7.5	2-9,2339-2332;11-17,2329-2323;19-21,2321-2319	1-1,2340-2340[UP5];10-10,2331-2330[AILt];18-18,2322-2322[SIL]	(((.(((((((..((((((((.&.))))))))-.))))))).)))	GGUAGACCUUAUCAACAGCAAG&GUUGUUGUU-UUAAGGUCAAUC	2	0.997579874873727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN6326_c0_g2_2330_TPlot.pdf
TRINITY_DN6326_c0_g2:254	si_s103	TRINITY_DN6326_c0_g2	243	263	254	-34.10	-24.08	0.706158357771261	7.5	2-14,262-250;18-21,246-243	1-1,263-263[UP5];15-17,249-247[SIL]	((((...(((((((((((((.&.)))))))))))))...))))	UCUGGGAUCCAGUCUGGAGCU&CGCUUCGGAUUGGAAAAUAGA	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN6326_c0_g2_254_TPlot.pdf
TRINITY_DN6326_c0_g2:305	si_s83	TRINITY_DN6326_c0_g2	294	315	305	-30.90	-21.70	0.702265372168285	12	6-8,310-308;9-21,306-294	1-5,315-311[UP5];x-x,307-307[BULt]	(((((((((((((.(((.....&.....)))-)))))))))))))	GAAGAAGAAGAGAUGGAUCUCU&UUCUUUCC-UUUCUUCUUCUUC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6326_c0_g2_305_TPlot.pdf
TRINITY_DN6326_c0_g2:927	si_s535	TRINITY_DN6326_c0_g2	917	936	927	-28.60	-18.90	0.660839160839161	5.5	1-13,936-924;15-17,923-921	14-14,x-x[BULq];18-21,920-917[UP3]	....(((-(((((((((((((&))))))))))))).)))....	UCAAGAU-GGAUCAAAAAUGG&UCAUUUUUGAUCCGAUCAAAA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN6326_c0_g2_927_TPlot.pdf
TRINITY_DN6326_c0_g2:930	si_s532	TRINITY_DN6326_c0_g2	920	939	930	-28.70	-18.90	0.658536585365854	8	4-16,936-924;18-20,923-921	1-3,939-937[UP5];17-17,x-x[BULq];21-21,920-920[UP3]	.(((-(((((((((((((...&...))))))))))))).))).	AGAU-GGAUCAAAAAUGGCAG&AAAUCAUUUUUGAUCCGAUCA	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN6326_c0_g2_930_TPlot.pdf
TRINITY_DN6326_c1_g1:193	si_a816	TRINITY_DN6326_c1_g1	181	202	193	-32.30	-21.10	0.653250773993808	4.5	2-13,201-190;14-19,188-183	1-1,202-202[UP5];x-x,189-189[BULt];20-21,182-181[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	AAUUUCUUCUUCUUCUUCUUCU&CGAAGAAGAAGAA-AGGAAAGA	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN6326_c1_g1_193_TPlot.pdf
TRINITY_DN6326_c1_g1:2532	si_a398	TRINITY_DN6326_c1_g1	2519	2541	2532	-22.40	-15.80	0.705357142857143	8.5	3-15,2539-2527;16-20,2524-2520	1-2,2541-2540[UP5];x-x,2526-2525[BULt];21-21,2519-2519[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	AGGACAGAGAACAAUUCUAUGAU&AAUAUAGAAUUGUUU--UGUUUA	4	0.999874024885933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN6326_c1_g1_2532_TPlot.pdf
TRINITY_DN63284_c0_g1:111	si_a657	TRINITY_DN63284_c0_g1	100	121	111	-33.80	-23.40	0.692307692307692	6.5	1-6,121-116;7-8,114-113;10-11,111-110;13-21,108-100	x-x,115-115[BULt];9-9,112-112[SIL];12-12,109-109[SIL]	(((((((((.((.((.((((((&))))))-)).)).)))))))))	AUCGAUAGGGAUAUCGCCGAUA&UAUCGG-GAAAUGCCUAUUGAU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN63284_c0_g1_111_TPlot.pdf
TRINITY_DN6329_c0_g1:195	si_s318	TRINITY_DN6329_c0_g1	184	207	195	-32.80	-23.10	0.704268292682927	13.5	1-9,207-199;13-20,192-185	10-12,198-193[AILt];21-21,184-184[UP3]	.((((((((......(((((((((&)))))))))---...)))))))).	GGUUUGUGAAUUGCCGAAGGACAG&CUGUCCUUC---UUGUUACAAACA	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN6329_c0_g1_195_TPlot.pdf
TRINITY_DN632_c0_g1:219	si_s68	TRINITY_DN632_c0_g1	206	229	219	-23.10	-15.50	0.670995670995671	6	1-3,229-227;4-13,225-216;14-21,213-206	x-x,226-226[BULt];x-x,215-214[BULt]	((((((((..((((((((((.(((&)))-))))))))))--))))))))	GGAGAAAACUAAAAUAGAGGAUUG&CAA-CUUCUAUUUU--UUUUCUUU	2	0.99999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN632_c0_g1_219_TPlot.pdf
TRINITY_DN632_c0_g1:220	si_s67	TRINITY_DN632_c0_g1	207	230	220	-25.60	-17.30	0.67578125	6	1-4,230-227;5-14,225-216;15-21,213-207	x-x,226-226[BULt];x-x,215-214[BULt]	(((((((..((((((((((.((((&))))-))))))))))--)))))))	GAGAAAACUAAAAUAGAGGAUUGU&GCAA-CUUCUAUUUU--UUUUCUU	3	0.99999999929573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN632_c0_g1_220_TPlot.pdf
TRINITY_DN632_c0_g1:77	si_a460	TRINITY_DN632_c0_g1	66	86	77	-21.60	-14.70	0.680555555555555	9.5	1-5,86-82;8-18,79-69	6-7,81-80[SIL];19-21,68-66[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	CAAGCAUAUUAUGUUCAGCAA&UUGUUAUAUAUAAUAUGUAAU	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN632_c0_g1_77_TPlot.pdf
TRINITY_DN63301_c0_g1:60	si_a20	TRINITY_DN63301_c0_g1	48	69	60	-26.70	-18.50	0.692883895131086	8.5	1-5,69-65;7-17,63-53;18-21,51-48	6-6,64-64[SIL];x-x,52-52[BULt]	((((.(((((((((((.(((((&))))).)))))))))))-))))	UGGAUACUGAGAGUGACUGGGU&GCCUAUUUAUUUUUAGU-UCUA	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN63301_c0_g1_60_TPlot.pdf
TRINITY_DN6330_c0_g2:380	si_a677	TRINITY_DN6330_c0_g2	369	391	380	-35.40	-23.66	0.668361581920904	13.5	1-5,391-387;9-11,381-379;13-21,377-369	6-8,386-382[AILt];12-12,378-378[SIL]	(((((((((.(((.....(((((&)))))--...))).)))))))))	CGAGACCGCUUGAUGGGUGGGAA&UUCCU--UAUUCACGCGGUUUCG	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN6330_c0_g2_380_TPlot.pdf
TRINITY_DN6330_c0_g2:439	si_s375	TRINITY_DN6330_c0_g2	429	454	439	-44.10	-29.60	0.671201814058957	17.5	1-6,454-449;7-10,442-439;12-19,438-431	x-x,448-443[BULt];11-11,x-x[BULq];20-21,430-429[UP3]	..((((((((-((((......((((((&))))))------)))).))))))))..	UUGGCGGGCG-GCGAUCGGACGCGAUC&GAUCGC------UCGCGUGUCCGCCUU	2	0.980896339800985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN6330_c0_g2_439_TPlot.pdf
TRINITY_DN6331_c0_g1:124	si_a28	TRINITY_DN6331_c0_g1	107	133	124	-30.70	-20.20	0.657980456026059	11.5	2-14,132-120;15-21,113-107	1-1,133-133[UP5];x-x,119-114[BULt]	(((((((......(((((((((((((.&.)))))))))))))------)))))))	AUCGGUCACGAUGUUAGGACUGGGAAG&AUUUUUAGUUCUAA------GACCGGU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN6331_c0_g1_124_TPlot.pdf
TRINITY_DN6331_c0_g1:824	si_a112	TRINITY_DN6331_c0_g1	814	833	824	-26.20	-17.20	0.656488549618321	8	1-5,833-829;8-13,826-821;15-19,820-816	6-7,828-827[SIL];14-14,x-x[BULq];20-21,815-814[UP3]	..(((((-((((((..(((((&)))))..)))))).)))))..	CGGGAAC-AGCUCGGUUUUUA&UAAAAUACGAGCUUGUUUUAU	3	0.999995299209174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN6331_c0_g1_824_TPlot.pdf
TRINITY_DN6331_c0_g1:827	si_a109	TRINITY_DN6331_c0_g1	817	836	827	-28.50	-19.10	0.670175438596491	7.5	2-8,835-829;11-16,826-821;18-21,820-817	1-1,836-836[UP5];9-10,828-827[SIL];17-17,x-x[BULq]	((((-((((((..(((((((.&.)))))))..)))))).))))	GAAC-AGCUCGGUUUUUAUUA&AGAUAAAAUACGAGCUUGUUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN6331_c0_g1_827_TPlot.pdf
TRINITY_DN63347_c0_g1:350	si_a138	TRINITY_DN63347_c0_g1	339	359	350	-26.30	-17.40	0.661596958174905	10	3-6,357-354;9-21,351-339	1-2,359-358[UP5];7-8,353-352[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	GGCGGCAACGAUUUCUUAUGC&UAGUAAUUAAUCGUUGUUGUU	2	0.987011695011009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN63347_c0_g1_350_TPlot.pdf
TRINITY_DN6335_c0_g1:406	si_a244	TRINITY_DN6335_c0_g1	394	415	406	-35.20	-23.10	0.65625	9.5	3-7,413-409;9-17,407-399;19-21,396-394	1-2,415-414[UP5];8-8,408-408[SIL];18-18,398-397[AILt]	(((..(((((((((.(((((..&..))))).)))))))))-.)))	GUAAAGGUCGGGGGUUCGAGCC&AAUUCGAUCCCCCGAUU-GUAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a244_TRINITY_DN6335_c0_g1_406_TPlot.pdf
TRINITY_DN63365_c0_g1:54	si_s812	TRINITY_DN63365_c0_g1	43	63	54	-26.40	-18.70	0.708333333333333	7	1-8,63-56;10-14,54-50;16-21,48-43	9-9,55-55[SIL];15-15,49-49[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	AUUGUUUGGGAACGGUGGCGA&UCGUUACCUUUUCUUAAUAAU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN63365_c0_g1_54_TPlot.pdf
TRINITY_DN63369_c0_g1:291	si_a641	TRINITY_DN63369_c0_g1	280	300	291	-23.60	-16.10	0.682203389830509	9	4-17,297-284;19-20,282-281	1-3,300-298[UP5];18-18,283-283[SIL];21-21,280-280[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	GGAGAUAUUACUCAGAAGCAC&AUUUUUUUGAGUAAUAUAUCG	4	0.999301175121407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN63369_c0_g1_291_TPlot.pdf
TRINITY_DN6337_c0_g1:229	si_a401	TRINITY_DN6337_c0_g1	218	238	229	-22.60	-15.40	0.68141592920354	7.5	1-16,238-223	17-21,222-218[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGUCCAGCAAAACAGUUUUAU&AUAGAAUUGUUUUGUUUAUAU	3	0.999999823029944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN6337_c0_g1_229_TPlot.pdf
TRINITY_DN6337_c0_g1:230	si_a400	TRINITY_DN6337_c0_g1	219	239	230	-22.80	-15.40	0.675438596491228	7.5	2-17,238-223	1-1,239-239[UP5];18-21,222-219[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUCCAGCAAAACAGUUUUAUU&UAUAGAAUUGUUUUGUUUAUA	2	0.999904838464018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN6337_c0_g1_230_TPlot.pdf
TRINITY_DN6337_c0_g1:29	si_a764	TRINITY_DN6337_c0_g1	18	37	29	-28.90	-20.00	0.69204152249135	4	1-9,37-29;11-12,28-27;14-21,25-18	10-10,x-x[BULq];13-13,26-26[SIL]	((((((((.((-(((((((((&))))))))).)).))))))))	UUGAAUCAUUU-AAAACCCAA&UUGGGUUUUUGAUUGAUUCAA	2	0.99258153146589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6337_c0_g1_29_TPlot.pdf
TRINITY_DN633_c0_g1:1523	si_s805	TRINITY_DN633_c0_g1	1512	1532	1523	-28.60	-18.60	0.65034965034965	8.5	2-11,1531-1522;13-19,1520-1514	1-1,1532-1532[UP5];12-12,1521-1521[SIL];20-21,1513-1512[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	GAAAGAGGUUAUGGAGAUGAU&UUUAUCUUCGUUACCUUUUCU	4	0.999999999999978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN633_c0_g1_1523_TPlot.pdf
TRINITY_DN633_c0_g1:1595	si_a785	TRINITY_DN633_c0_g1	1584	1605	1595	-25.90	-18.08	0.698069498069498	13.5	1-7,1605-1599;13-21,1592-1584	8-12,1598-1593[AILt]	(((((((((......(((((((&)))))))-.....)))))))))	GAAAGUAGAUAUGGCAGAGGAG&CUCUUCU-AUUUUUCUAUUUUC	3	0.999999999795148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN633_c0_g1_1595_TPlot.pdf
TRINITY_DN633_c0_g1:1642	si_a41	TRINITY_DN633_c0_g1	1632	1652	1642	-42.50	-28.70	0.675294117647059	4.5	1-5,1652-1648;6-16,1646-1636;18-21,1635-1632	x-x,1647-1647[BULt];17-17,x-x[BULq]	((((-(((((((((((.(((((&)))))-))))))))))).))))	GAUU-CUAGACCUACUAGGUCU&AGACC-GGUAGGUCUAGGAGUC	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a41_TRINITY_DN633_c0_g1_1642_TPlot.pdf
TRINITY_DN633_c0_g1:1643	si_a40	TRINITY_DN633_c0_g1	1632	1653	1643	-40.50	-28.20	0.696296296296296	6.5	2-6,1652-1648;7-19,1646-1634	1-1,1653-1653[UP5];x-x,1647-1647[BULt];20-21,1633-1632[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	GAUUCUAGACCUACUAGGUCUA&AAGACC-GGUAGGUCUAGGAGU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN633_c0_g1_1643_TPlot.pdf
TRINITY_DN633_c0_g1:1644	si_a39	TRINITY_DN633_c0_g1	1633	1654	1644	-40.10	-28.20	0.703241895261845	7.5	3-7,1652-1648;8-20,1646-1634	1-2,1654-1653[UP5];x-x,1647-1647[BULt];21-21,1633-1633[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	AUUCUAGACCUACUAGGUCUAA&UAAGACC-GGUAGGUCUAGGAG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a39_TRINITY_DN633_c0_g1_1644_TPlot.pdf
TRINITY_DN633_c0_g1:1646	si_a37	TRINITY_DN633_c0_g1	1635	1656	1646	-40.10	-26.70	0.665835411471322	10.5	5-9,1652-1648;10-21,1646-1635	1-4,1656-1653[UP5];x-x,1647-1647[BULt]	((((((((((((.(((((....&....)))))-))))))))))))	UCUAGACCUACUAGGUCUAAAU&UCUAAGACC-GGUAGGUCUAGG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a37_TRINITY_DN633_c0_g1_1646_TPlot.pdf
TRINITY_DN633_c0_g1:1867	si_s71	TRINITY_DN633_c0_g1	1853	1876	1867	-25.70	-17.00	0.66147859922179	6	1-5,1876-1872;7-13,1870-1864;14-20,1860-1854	6-6,1871-1871[SIL];x-x,1863-1861[BULt];21-21,1853-1853[UP3]	.(((((((...(((((((.(((((&))))).)))))))---))))))).	UGGAAAGACUAAAAAAAAAAGAAG&CUUCUAUUUUUUU---UCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN633_c0_g1_1867_TPlot.pdf
TRINITY_DN633_c0_g1:1951	si_s316	TRINITY_DN633_c0_g1	1939	1961	1951	-31.50	-20.90	0.663492063492063	9	2-4,1960-1958;5-16,1956-1945;17-18,1943-1942	1-1,1961-1961[UP5];x-x,1957-1957[BULt];x-x,1944-1944[BULt];19-21,1941-1939[UP3]	...((.((((((((((((.(((.&.)))-))))))))))))-))...	CAAGUCAGCGAGGAGGACGAGAU&UUCU-GUCCUUCUUGUU-ACAAA	3	0.999992952957843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN633_c0_g1_1951_TPlot.pdf
TRINITY_DN633_c0_g1:1958	si_a498	TRINITY_DN633_c0_g1	1947	1967	1958	-33.50	-21.80	0.650746268656716	15	8-21,1960-1947	1-7,1967-1961[UP5]	((((((((((((((.......&.......))))))))))))))	CGAGGAGGACGAGAUAUCUAG&UGUCGUUUUUCGUCUUCCUUG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN633_c0_g1_1958_TPlot.pdf
TRINITY_DN633_c0_g1:2042	si_s81	TRINITY_DN633_c0_g1	2031	2052	2042	-28.90	-19.30	0.667820069204152	7	2-8,2051-2045;9-17,2043-2035	1-1,2052-2052[UP5];x-x,2044-2044[BULt];18-21,2034-2031[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	UGCUGAAGAAAGGCAAAGAAAG&UUUUCUUU-CCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN633_c0_g1_2042_TPlot.pdf
TRINITY_DN633_c0_g1:2043	si_s80	TRINITY_DN633_c0_g1	2032	2053	2043	-28.20	-20.80	0.73758865248227	6	1-9,2053-2045;10-18,2043-2035	x-x,2044-2044[BULt];19-21,2034-2032[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	GCUGAAGAAAGGCAAAGAAAGA&UUUUUCUUU-CCUUUCUUCUUC	3	0.999999999984958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN633_c0_g1_2043_TPlot.pdf
TRINITY_DN633_c0_g1:2046	si_s78	TRINITY_DN633_c0_g1	2034	2055	2046	-26.20	-20.90	0.797709923664122	7	3-11,2053-2045;12-20,2043-2035	1-2,2055-2054[UP5];x-x,2044-2044[BULt];21-21,2034-2034[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	UGAAGAAAGGCAAAGAAAGACU&UUUUUUUCUUU-CCUUUCUUCU	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN633_c0_g1_2046_TPlot.pdf
TRINITY_DN633_c0_g1:2047	si_s77	TRINITY_DN633_c0_g1	2035	2056	2047	-25.50	-20.50	0.803921568627451	8	4-12,2053-2045;13-21,2043-2035	1-3,2056-2054[UP5];x-x,2044-2044[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GAAGAAAGGCAAAGAAAGACUC&UUUUUUUUCUUU-CCUUUCUUC	3	0.999988999145849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN633_c0_g1_2047_TPlot.pdf
TRINITY_DN633_c0_g1:2048	si_s76	TRINITY_DN633_c0_g1	2036	2057	2048	-23.60	-17.50	0.741525423728813	9	5-13,2053-2045;14-21,2043-2036	1-4,2057-2054[UP5];x-x,2044-2044[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AAGAAAGGCAAAGAAAGACUCC&AUUUUUUUUCUUU-CCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN633_c0_g1_2048_TPlot.pdf
TRINITY_DN633_c0_g1:2049	si_s75	TRINITY_DN633_c0_g1	2037	2058	2049	-24.00	-16.60	0.691666666666667	11	6-14,2053-2045;15-21,2043-2037	1-5,2058-2054[UP5];x-x,2044-2044[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	AGAAAGGCAAAGAAAGACUCCA&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN633_c0_g1_2049_TPlot.pdf
TRINITY_DN633_c0_g1:2724	si_s82	TRINITY_DN633_c0_g1	2713	2736	2724	-28.90	-20.30	0.70242214532872	8	1-6,2736-2731;7-8,2728-2727;9-20,2725-2714	x-x,2730-2729[BULt];x-x,2726-2726[BULt];21-21,2713-2713[UP3]	.((((((((((((.((..((((((&))))))--))-)))))))))))).	CGGAGGAAGAAAGUGACGAAGAAA&UUUCUU--UC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN633_c0_g1_2724_TPlot.pdf
TRINITY_DN633_c0_g1:2725	si_s809	TRINITY_DN633_c0_g1	2713	2734	2725	-28.50	-18.60	0.652631578947368	9	1-10,2734-2725;12-18,2722-2716	11-11,2724-2723[AILt];19-21,2715-2713[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	CGGAGGAAGAAAGUGACGAAGA&UCUUCGUUAC-CUUUUCUUAAU	3	0.999999999996125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN633_c0_g1_2725_TPlot.pdf
TRINITY_DN633_c0_g1:2895	si_s78	TRINITY_DN633_c0_g1	2885	2904	2895	-26.20	-17.30	0.66030534351145	8.5	2-10,2903-2895;12-19,2894-2887	1-1,2904-2904[UP5];11-11,x-x[BULq];20-21,2886-2885[UP3]	..((((((((-(((((((((.&.))))))))).))))))))..	UAGAGAAAGG-GAGAAGGAAG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN633_c0_g1_2895_TPlot.pdf
TRINITY_DN633_c0_g1:4580	si_s97	TRINITY_DN633_c0_g1	4569	4590	4580	-36.30	-24.70	0.680440771349862	8	1-5,4590-4586;7-7,4583-4583;9-17,4581-4573;19-21,4571-4569	6-6,4585-4584[AILt];8-8,4582-4582[SIL];18-18,4572-4572[SIL]	(((.(((((((((.(..(((((&)))))-.).))))))))).)))	UUCGGGUCCGAAGGGUCAGAAG&CUUCU-UCGCUUCGGAUUGGAA	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN633_c0_g1_4580_TPlot.pdf
TRINITY_DN633_c0_g1:4582	si_s95	TRINITY_DN633_c0_g1	4571	4592	4582	-36.30	-24.30	0.669421487603306	8	1-7,4592-4586;9-9,4583-4583;11-19,4581-4573;21-21,4571-4571	8-8,4585-4584[AILt];10-10,4582-4582[SIL];20-20,4572-4572[SIL]	(.(((((((((.(..(((((((&)))))))-.).))))))))).)	CGGGUCCGAAGGGUCAGAAGAA&UUCUUCU-UCGCUUCGGAUUGG	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN633_c0_g1_4582_TPlot.pdf
TRINITY_DN633_c0_g1:4583	si_s94	TRINITY_DN633_c0_g1	4572	4593	4583	-35.50	-25.90	0.729577464788732	8	1-8,4593-4586;10-10,4583-4583;12-20,4581-4573	9-9,4585-4584[AILt];11-11,4582-4582[SIL];21-21,4572-4572[UP3]	.(((((((((.(..((((((((&))))))))-.).))))))))).	GGGUCCGAAGGGUCAGAAGAAG&CUUCUUCU-UCGCUUCGGAUUG	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN633_c0_g1_4583_TPlot.pdf
TRINITY_DN633_c0_g1:4605	si_a761	TRINITY_DN633_c0_g1	4593	4615	4605	-30.10	-19.70	0.654485049833887	9	1-5,4615-4611;6-8,4609-4607;11-15,4604-4600;16-21,4598-4593	x-x,4610-4610[BULt];9-10,4606-4605[SIL];x-x,4599-4599[BULt]	((((((.(((((..(((.(((((&)))))-)))..)))))-))))))	GGUCAAUUCAAAUUCCCGAGAGG&CCUUU-GGGUUUUUGA-UUGAUU	4	0.999999999957572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN633_c0_g1_4605_TPlot.pdf
TRINITY_DN633_c0_g1:4642	si_a485	TRINITY_DN633_c0_g1	4632	4651	4642	-26.60	-17.50	0.657894736842105	8.5	1-10,4651-4642;12-17,4641-4636;19-20,4634-4633	11-11,x-x[BULq];18-18,4635-4635[SIL];21-21,4632-4632[UP3]	.((.((((((-((((((((((&)))))))))).)))))).)).	CAAGGAUAUA-UCUGUGUGGC&GUUAUAUAGAAUAUGUCGUUU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN633_c0_g1_4642_TPlot.pdf
TRINITY_DN633_c0_g1:4806	si_a319	TRINITY_DN633_c0_g1	4795	4816	4806	-22.40	-15.40	0.6875	9	3-7,4814-4810;8-18,4808-4798	1-2,4816-4815[UP5];x-x,4809-4809[BULt];19-21,4797-4795[UP3]	...(((((((((((.(((((..&..)))))-)))))))))))...	AUCGAGAAAAUCAUAGGAUACA&UUUAUCC-AUGAUUUUUUUAUU	4	0.999999999716586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN633_c0_g1_4806_TPlot.pdf
TRINITY_DN633_c0_g1:4807	si_a318	TRINITY_DN633_c0_g1	4796	4817	4807	-22.50	-15.40	0.684444444444444	10	4-8,4814-4810;9-19,4808-4798	1-3,4817-4815[UP5];x-x,4809-4809[BULt];20-21,4797-4796[UP3]	..(((((((((((.(((((...&...)))))-)))))))))))..	UCGAGAAAAUCAUAGGAUACAA&AUUUAUCC-AUGAUUUUUUUAU	2	0.999997915335075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN633_c0_g1_4807_TPlot.pdf
TRINITY_DN633_c0_g1:4846	si_s587	TRINITY_DN633_c0_g1	4835	4854	4846	-28.70	-19.60	0.682926829268293	4.5	2-7,4853-4848;9-21,4847-4835	1-1,4854-4854[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	UUUGGAUUUAUUC-UGAUUUA&AAAAUCAUGGAUAAAUCCAAG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s587_TRINITY_DN633_c0_g1_4846_TPlot.pdf
TRINITY_DN633_c0_g1:4847	si_s586	TRINITY_DN633_c0_g1	4836	4855	4847	-27.10	-19.10	0.70479704797048	6	3-8,4853-4848;10-21,4847-4836	1-2,4855-4854[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	UUGGAUUUAUUC-UGAUUUAU&AAAAAUCAUGGAUAAAUCCAA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s586_TRINITY_DN633_c0_g1_4847_TPlot.pdf
TRINITY_DN633_c0_g1:4848	si_s585	TRINITY_DN633_c0_g1	4837	4856	4848	-27.00	-18.20	0.674074074074074	8	4-9,4853-4848;11-21,4847-4837	1-3,4856-4854[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	UGGAUUUAUUC-UGAUUUAUU&AAAAAAUCAUGGAUAAAUCCA	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN633_c0_g1_4848_TPlot.pdf
TRINITY_DN633_c0_g1:790	si_a314	TRINITY_DN633_c0_g1	779	799	790	-27.10	-17.90	0.660516605166052	7	1-3,799-797;5-8,795-792;10-19,790-781	4-4,796-796[SIL];9-9,791-791[SIL];20-21,780-779[UP3]	..((((((((((.((((.(((&))).)))).))))))))))..	GCAAAUCAUGGAGAGAUGCAA&UUGGAUUUAUCCAUGAUUUUU	4	0.999999814907777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN633_c0_g1_790_TPlot.pdf
TRINITY_DN6340_c0_g1:342	si_a404	TRINITY_DN6340_c0_g1	331	351	342	-21.70	-14.70	0.67741935483871	8	3-6,349-346;8-20,344-332	1-2,351-350[UP5];7-7,345-345[SIL];21-21,331-331[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	CAGAUAUGAGCAAAUCAAUAC&GAAUUGUUUUGUUUAUAUUUA	2	0.999999927621939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6340_c0_g1_342_TPlot.pdf
TRINITY_DN63424_c0_g1:40	si_s71	TRINITY_DN63424_c0_g1	29	49	40	-25.70	-18.70	0.727626459143969	8	1-18,49-32	19-21,31-29[UP3]	...((((((((((((((((((&))))))))))))))))))...	CUCAGAGGAAGAAAGUGGAGG&CUUCUAUUUUUUUUCUUUCCU	3	0.999999998944216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN63424_c0_g1_40_TPlot.pdf
TRINITY_DN63457_c0_g1:342	si_s558	TRINITY_DN63457_c0_g1	331	351	342	-28.20	-19.90	0.705673758865248	8	4-14,348-338;16-21,336-331	1-3,351-349[UP5];15-15,337-337[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UUGUCCGGAAAGUAUUAGGAC&GAAUUAAUAUUUUCGGGACAA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN63457_c0_g1_342_TPlot.pdf
TRINITY_DN63463_c0_g1:198	si_a633	TRINITY_DN63463_c0_g1	188	207	198	-26.40	-17.40	0.659090909090909	8	1-5,207-203;7-17,201-191;19-21,190-188	6-6,202-202[SIL];18-18,x-x[BULq]	(((-(((((((((((.(((((&))))).))))))))))).)))	UAC-CAAAAGGGUCGUCGUGA&UUAUGUCGAUUUUUUUGAGUA	3	0.999999999920891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN63463_c0_g1_198_TPlot.pdf
TRINITY_DN63463_c0_g1:201	si_a630	TRINITY_DN63463_c0_g1	190	210	201	-25.80	-18.40	0.713178294573643	7.5	2-8,209-203;10-20,201-191	1-1,210-210[UP5];9-9,202-202[SIL];21-21,190-190[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	CCAAAAGGGUCGUCGUGAUAA&GUAUUAUGUCGAUUUUUUUGA	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN63463_c0_g1_201_TPlot.pdf
TRINITY_DN63484_c0_g1:341	si_a80	TRINITY_DN63484_c0_g1	330	350	341	-22.10	-14.80	0.669683257918552	7.5	3-19,348-332	1-2,350-349[UP5];20-21,331-330[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCUUUUUAAUAAUGAAGGAAG&UGUUUUUCAUUAUUAAGAAAA	2	0.999514091019493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN63484_c0_g1_341_TPlot.pdf
TRINITY_DN63486_c0_g1:27	si_a546	TRINITY_DN63486_c0_g1	16	36	27	-28.60	-19.70	0.688811188811189	4	2-10,35-27;12-16,25-21;18-21,19-16	1-1,36-36[UP5];11-11,26-26[SIL];17-17,20-20[SIL]	((((.(((((.(((((((((.&.))))))))).))))).))))	GAUACAGAAACAGAUUGAACA&GGUUCAAUCUAUUUCUUUAUC	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN63486_c0_g1_27_TPlot.pdf
TRINITY_DN6348_c0_g1:2812	si_a813	TRINITY_DN6348_c0_g1	2801	2822	2812	-32.90	-21.60	0.656534954407295	7	1-6,2822-2817;8-14,2814-2808;16-19,2806-2803	7-7,2816-2815[AILt];15-15,2807-2807[SIL];20-21,2802-2801[UP3]	..((((.(((((((..((((((&))))))-.))))))).))))..	GGCCUUGCUUCUUCAAUCGCUU&AAGCGA-AGAAGAAGAAAGGAA	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN6348_c0_g1_2812_TPlot.pdf
TRINITY_DN6348_c0_g1:565	si_a47	TRINITY_DN6348_c0_g1	551	574	565	-41.20	-29.30	0.711165048543689	13	4-11,571-564;12-21,560-551	1-3,574-572[UP5];x-x,563-561[BULt]	((((((((((...((((((((...&...))))))))---))))))))))	UGAGUCGGCUGGACCUGGACCACU&GUAGGUCUAGG---AGUCGACUCG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN6348_c0_g1_565_TPlot.pdf
TRINITY_DN6349_c0_g1:1693	si_a630	TRINITY_DN6349_c0_g1	1682	1702	1693	-25.80	-17.40	0.674418604651163	13.5	8-21,1695-1682	1-7,1702-1696[UP5]	((((((((((((((.......&.......))))))))))))))	UCAAGAAAAUCGACCUUGGGG&GUAUUAUGUCGAUUUUUUUGA	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN6349_c0_g1_1693_TPlot.pdf
TRINITY_DN634_c0_g1:1466	si_s622	TRINITY_DN634_c0_g1	1455	1474	1466	-34.20	-24.10	0.704678362573099	7	1-4,1474-1471;7-13,1469-1463;15-21,1461-1455	5-6,1470-1470[AILq];14-14,1462-1462[SIL]	(((((((.(((((((.-((((&))))..))))))).)))))))	CUGCGAACGGGUCGCA-GGAU&AUCCAAGCGAUCUUUUCGUAG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN634_c0_g1_1466_TPlot.pdf
TRINITY_DN634_c0_g1:1862	si_s373	TRINITY_DN634_c0_g1	1849	1871	1862	-47.30	-33.10	0.699788583509514	7	1-8,1871-1864;10-12,1862-1860;13-14,1858-1857;16-19,1855-1852;20-21,1850-1849	9-9,1863-1863[SIL];x-x,1859-1859[BULt];15-15,1856-1856[SIL];x-x,1851-1851[BULt]	((.((((.((.(((.((((((((&)))))))).)))-)).))))-))	GGACGGAGACAGCGCGCGGUCGG&CCGAUCGCUCGC-GUGUCCG-CC	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN634_c0_g1_1862_TPlot.pdf
TRINITY_DN6350_c0_g1:1140	si_s76	TRINITY_DN6350_c0_g1	1128	1149	1140	-23.60	-17.20	0.728813559322034	8	4-12,1146-1138;13-20,1136-1129	1-3,1149-1147[UP5];x-x,1137-1137[BULt];21-21,1128-1128[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	UAGAAAGGAUAAGAAAAAACAG&AUUUUUUUUCUU-UCCUUUCUU	2	0.999999999999927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6350_c0_g1_1140_TPlot.pdf
TRINITY_DN6350_c0_g1:1740	si_s52	TRINITY_DN6350_c0_g1	1729	1746	1740	-31.30	-21.20	0.677316293929712	7.5	1-6,1746-1741;10-20,1740-1730	7-9,x-x[BULq];21-21,1729-1729[UP3]	.(((((((((((---((((((&))))))...))))))))))).	UGUUGCUGACUU---AUCCAA&UUGGAUUUCAAGUUAGCAACU	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN6350_c0_g1_1740_TPlot.pdf
TRINITY_DN6350_c0_g1:941	si_s887	TRINITY_DN6350_c0_g1	930	950	941	-26.80	-18.00	0.671641791044776	15.5	9-21,942-930	1-8,950-943[UP5]	(((((((((((((........&........)))))))))))))	AGAGAAAGUCUAUAAGUACAA&AAAAAUAAAUAGGCUUUCUCU	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN6350_c0_g1_941_TPlot.pdf
TRINITY_DN6351_c0_g1:2110	si_a149	TRINITY_DN6351_c0_g1	2098	2119	2110	-29.40	-21.70	0.738095238095238	9	2-12,2118-2108;13-18,2106-2101	1-1,2119-2119[UP5];x-x,2107-2107[BULt];19-21,2100-2098[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	GAAGACCUUAAAAGCAACGGCU&CGUUGUUGUUUU-AAGGUCAAU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN6351_c0_g1_2110_TPlot.pdf
TRINITY_DN6351_c0_g1:2251	si_s77	TRINITY_DN6351_c0_g1	2237	2260	2251	-25.50	-17.00	0.666666666666667	10.5	1-12,2260-2249;13-19,2245-2239	x-x,2248-2246[BULt];20-21,2238-2237[UP3]	..(((((((...((((((((((((&))))))))))))---)))))))..	UCAGAGAGGCAGAAAGAAAGAGAA&UUUUUUUUCUUU---CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6351_c0_g1_2251_TPlot.pdf
TRINITY_DN6351_c0_g1:962	si_s568	TRINITY_DN6351_c0_g1	951	971	962	-30.60	-20.60	0.673202614379085	11	1-9,971-963;12-15,960-957	10-11,962-961[SIL];16-21,956-951[UP3]	......((((..(((((((((&)))))))))..))))......	AUUGGCUUCCAGGUCCCGAGA&UUUCGGGACAAGGAAUAAAAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s568_TRINITY_DN6351_c0_g1_962_TPlot.pdf
TRINITY_DN6352_c0_g2:353	si_s557	TRINITY_DN6352_c0_g2	342	368	353	-28.80	-18.90	0.65625	15	1-9,368-360;10-19,353-344	x-x,359-354[BULt];20-21,343-342[UP3]	..((((((((((......(((((((((&)))))))))------))))))))))..	UAUCCCGAAAGUUUUACUAUUAAUUCU&AGAAUUAAU------AUUUUCGGGACA	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s557_TRINITY_DN6352_c0_g2_353_TPlot.pdf
TRINITY_DN6352_c0_g2:362	si_s554	TRINITY_DN6352_c0_g2	345	371	362	-25.90	-16.90	0.652509652509653	17.5	4-12,368-360;13-21,353-345	1-3,371-369[UP5];x-x,359-354[BULt]	(((((((((......(((((((((...&...)))))))))------)))))))))	CCCGAAAGUUUUACUAUUAAUUCUCUA&AAUAGAAUUAAU------AUUUUCGGG	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s554_TRINITY_DN6352_c0_g2_362_TPlot.pdf
TRINITY_DN6356_c0_g2:2395	si_s308	TRINITY_DN6356_c0_g2	2384	2404	2395	-32.80	-22.88	0.697560975609756	10.5	2-6,2403-2399;10-20,2395-2385	1-1,2404-2404[UP5];7-9,2398-2396[SIL];21-21,2384-2384[UP3]	.(((((((((((...(((((.&.)))))...))))))))))).	UGGAGGGGCGGACUAUUCGCU&UGCGAAAAUUCUGUCCUUCUU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN6356_c0_g2_2395_TPlot.pdf
TRINITY_DN6357_c0_g1:1098	si_s606	TRINITY_DN6357_c0_g1	1087	1108	1098	-28.20	-18.50	0.656028368794326	11.5	1-3,1108-1106;6-9,1102-1099;11-20,1097-1088	4-5,1105-1103[AILt];10-10,1098-1098[SIL];21-21,1087-1087[UP3]	.((((((((((.((((...(((&)))-..)))).)))))))))).	AGGAUUUAGAGUGGAUGCAGCU&AGC-GAAUCUUUUUUAAAUCCA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN6357_c0_g1_1098_TPlot.pdf
TRINITY_DN6357_c0_g1:1099	si_s605	TRINITY_DN6357_c0_g1	1088	1109	1099	-27.50	-18.20	0.661818181818182	11.5	2-4,1108-1106;7-10,1102-1099;12-21,1097-1088	1-1,1109-1109[UP5];5-6,1105-1103[AILt];11-11,1098-1098[SIL]	((((((((((.((((...(((.&.)))-..)))).))))))))))	GGAUUUAGAGUGGAUGCAGCUA&AAGC-GAAUCUUUUUUAAAUCC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN6357_c0_g1_1099_TPlot.pdf
TRINITY_DN6357_c0_g1:1592	si_a147	TRINITY_DN6357_c0_g1	1581	1601	1592	-30.40	-19.94	0.655921052631579	10	1-10,1601-1592;16-20,1586-1582	11-15,1591-1587[SIL];21-21,1581-1581[UP3]	.(((((.....((((((((((&)))))))))).....))))).	GGACCUGGAUUUAACGACGAU&AUCGUUGUUGUUUUAAGGUCA	2	0.999959682260553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN6357_c0_g1_1592_TPlot.pdf
TRINITY_DN6357_c0_g1:1596	si_a146	TRINITY_DN6357_c0_g1	1582	1605	1596	-29.70	-20.20	0.68013468013468	10	1-13,1605-1593;17-21,1586-1582	14-16,1592-1587[AILt]	(((((......(((((((((((((&)))))))))))))---...)))))	GACCUGGAUUUAACGACGAUGGUU&AAUCGUUGUUGUU---UUAAGGUC	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN6357_c0_g1_1596_TPlot.pdf
TRINITY_DN635_c0_g1:1216	si_a221	TRINITY_DN635_c0_g1	1205	1226	1216	-25.20	-16.70	0.662698412698413	9.5	2-4,1225-1223;7-9,1220-1218;10-20,1216-1206	1-1,1226-1226[UP5];5-6,1222-1221[SIL];x-x,1217-1217[BULt];21-21,1205-1205[UP3]	.(((((((((((.(((..(((.&.)))..)))-))))))))))).	AUAUAGGAACAUCGAGGGUGAC&AUUAAACUC-AUGUUUCUAUAA	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN635_c0_g1_1216_TPlot.pdf
TRINITY_DN635_c0_g1:2020	si_a276	TRINITY_DN635_c0_g1	2008	2029	2020	-37.90	-26.16	0.69023746701847	10	1-7,2029-2023;12-15,2018-2015;16-21,2013-2008	8-11,2022-2019[SIL];x-x,2014-2014[BULt]	((((((.((((....(((((((&)))))))....))))-))))))	CCAAGCAGAUUCCUGCGUAGGC&GCCUACGAAAAGAUC-GCUUGG	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN635_c0_g1_2020_TPlot.pdf
TRINITY_DN635_c0_g1:2327	si_a432	TRINITY_DN635_c0_g1	2317	2336	2327	-35.80	-25.60	0.715083798882682	5.5	2-9,2335-2328;11-17,2326-2320;19-20,2319-2318	1-1,2336-2336[UP5];10-10,2327-2327[SIL];18-18,x-x[BULq];21-21,2317-2317[UP3]	.((-(((((((.((((((((.&.)))))))).))))))).)).	AUC-UGUCCAAGGGAUCCUAA&AUAGGAUCCGUUGGAUAUGAG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a432_TRINITY_DN635_c0_g1_2327_TPlot.pdf
TRINITY_DN635_c0_g1:2329	si_a430	TRINITY_DN635_c0_g1	2318	2338	2329	-33.70	-24.90	0.738872403560831	9.5	4-11,2335-2328;13-19,2326-2320	1-3,2338-2336[UP5];12-12,2327-2327[SIL];20-21,2319-2318[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	UCUGUCCAAGGGAUCCUAAAC&AUAUAGGAUCCGUUGGAUAUG	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN635_c0_g1_2329_TPlot.pdf
TRINITY_DN635_c0_g1:5050	si_s87	TRINITY_DN635_c0_g1	5039	5059	5050	-32.90	-27.70	0.841945288753799	5.5	1-18,5059-5042	19-21,5041-5039[UP3]	...((((((((((((((((((&))))))))))))))))))...	CCCCGAAGAAGAGGAGAGGAG&UUCCUUUCUUCUUCUUCGCUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN635_c0_g1_5050_TPlot.pdf
TRINITY_DN635_c0_g1:5070	si_s79	TRINITY_DN635_c0_g1	5057	5079	5070	-26.20	-22.60	0.862595419847328	6	1-14,5079-5066;15-21,5063-5057	x-x,5065-5064[BULt]	(((((((..((((((((((((((&))))))))))))))--)))))))	GAGGAGAAUAAGGAGAGAAAGGA&UUUUUUCUUUCCUU--UCUUCUU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN635_c0_g1_5070_TPlot.pdf
TRINITY_DN6361_c0_g1:101	si_s130	TRINITY_DN6361_c0_g1	90	109	101	-28.70	-18.90	0.658536585365854	9	1-5,109-105;9-19,102-92	6-8,104-103[AILq];20-21,91-90[UP3]	..(((((((((((..-(((((&)))))...)))))))))))..	AAUUGAUUGGUUCCA-UCUUC&GAAGAGUUGAAUCAAUCAAAA	4	0.922668393013558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s130_TRINITY_DN6361_c0_g1_101_TPlot.pdf
TRINITY_DN6361_c0_g1:1187	si_s100	TRINITY_DN6361_c0_g1	1176	1197	1187	-33.70	-23.40	0.694362017804154	8	1-5,1197-1193;6-6,1191-1191;8-19,1189-1178	x-x,1192-1192[BULt];7-7,1190-1190[SIL];20-21,1177-1176[UP3]	..((((((((((((.(.(((((&)))))-).))))))))))))..	CAUUUCCAAUCUGACGACGAGG&CUUCG-CUUCGGAUUGGAAAAU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN6361_c0_g1_1187_TPlot.pdf
TRINITY_DN6361_c0_g1:1189	si_s98	TRINITY_DN6361_c0_g1	1178	1199	1189	-34.70	-23.50	0.677233429394813	8	2-7,1198-1193;8-8,1191-1191;10-21,1189-1178	1-1,1199-1199[UP5];x-x,1192-1192[BULt];9-9,1190-1190[SIL]	((((((((((((.(.((((((.&.))))))-).))))))))))))	UUUCCAAUCUGACGACGAGGGC&UUCUUCG-CUUCGGAUUGGAAA	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN6361_c0_g1_1189_TPlot.pdf
TRINITY_DN6363_c0_g1:12717	si_a142	TRINITY_DN6363_c0_g1	12706	12726	12717	-23.50	-15.90	0.676595744680851	10.5	4-7,12723-12720;9-21,12718-12706	1-3,12726-12724[UP5];8-8,12719-12719[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	UUAAGACAACAGCAGUUGCAA&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999985194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6363_c0_g1_12717_TPlot.pdf
TRINITY_DN6363_c0_g1:1308	si_s773	TRINITY_DN6363_c0_g1	1297	1317	1308	-23.10	-15.80	0.683982683982684	11	3-15,1315-1303	1-2,1317-1316[UP5];16-21,1302-1297[UP3]	......(((((((((((((..&..)))))))))))))......	UCCAGAAGCAGUAGUAGUUCU&UUAAUUACUAUUGCUAUAAAA	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN6363_c0_g1_1308_TPlot.pdf
TRINITY_DN6363_c0_g1:1312	si_s769	TRINITY_DN6363_c0_g1	1301	1321	1312	-27.00	-20.30	0.751851851851852	8.5	2-4,1320-1318;7-19,1315-1303	1-1,1321-1321[UP5];5-6,1317-1316[SIL];20-21,1302-1301[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	GAAGCAGUAGUAGUUCUUCGA&ACGAUUAAUUACUAUUGCUAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN6363_c0_g1_1312_TPlot.pdf
TRINITY_DN6363_c0_g1:1641	si_s827	TRINITY_DN6363_c0_g1	1630	1651	1641	-21.90	-14.90	0.680365296803653	9	2-4,1650-1648;6-19,1645-1632	1-1,1651-1651[UP5];5-5,1647-1646[AILt];20-21,1631-1630[UP3]	..((((((((((((((..(((.&.)))-.))))))))))))))..	GACAAAUUGUUUUUCGGGUGUA&AAUA-AUGAAAAACAAUUUGAA	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN6363_c0_g1_1641_TPlot.pdf
TRINITY_DN6363_c0_g1:2824	si_s68	TRINITY_DN6363_c0_g1	2813	2833	2824	-23.10	-15.30	0.662337662337662	8.5	3-11,2831-2823;13-19,2821-2815	1-2,2833-2832[UP5];12-12,2822-2822[SIL];20-21,2814-2813[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	AUAGAAAAGUAAUGGAAGUAC&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6363_c0_g1_2824_TPlot.pdf
TRINITY_DN6363_c0_g1:4373	si_s69	TRINITY_DN6363_c0_g1	4362	4382	4373	-23.40	-15.40	0.658119658119658	9.5	3-7,4380-4376;9-20,4374-4363	1-2,4382-4381[UP5];8-8,4375-4375[SIL];21-21,4362-4362[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	CGAAGAGAGAAAACGGGAGAG&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6363_c0_g1_4373_TPlot.pdf
TRINITY_DN6363_c0_g1:4374	si_s68	TRINITY_DN6363_c0_g1	4363	4383	4374	-23.10	-15.40	0.666666666666667	10.5	4-8,4380-4376;10-21,4374-4363	1-3,4383-4381[UP5];9-9,4375-4375[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAGAGAAAACGGGAGAGA&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6363_c0_g1_4374_TPlot.pdf
TRINITY_DN6363_c0_g1:4531	si_a21	TRINITY_DN6363_c0_g1	4519	4540	4531	-24.30	-16.90	0.695473251028807	7.5	1-2,4540-4539;5-14,4536-4527;15-21,4525-4519	3-4,4538-4537[SIL];x-x,4526-4526[BULt]	(((((((.((((((((((..((&))..))))))))))-)))))))	UUAGAACGUGAAAGUGAACUGG&CCUAUUUAUUUUUA-GUUCUAA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN6363_c0_g1_4531_TPlot.pdf
TRINITY_DN6363_c0_g1:4583	si_s73	TRINITY_DN6363_c0_g1	4572	4592	4583	-24.00	-15.70	0.654166666666667	10.5	1-3,4592-4590;5-9,4588-4584;12-21,4581-4572	4-4,4589-4589[SIL];10-11,4583-4582[SIL]	((((((((((..(((((.(((&))).)))))..))))))))))	AAAGGAGAGGUUAGAGAAGGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6363_c0_g1_4583_TPlot.pdf
TRINITY_DN6363_c0_g1:4584	si_s77	TRINITY_DN6363_c0_g1	4573	4593	4584	-25.50	-18.90	0.741176470588235	9	1-10,4593-4584;13-20,4581-4574	11-12,4583-4582[SIL];21-21,4573-4573[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAGGAGAGGUUAGAGAAGGAA&UUUUUUUUCUUUCCUUUCUUC	3	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6363_c0_g1_4584_TPlot.pdf
TRINITY_DN6363_c0_g1:4586	si_s75	TRINITY_DN6363_c0_g1	4575	4595	4586	-24.00	-18.10	0.754166666666667	9	3-12,4593-4584;15-21,4581-4575	1-2,4595-4594[UP5];13-14,4583-4582[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GGAGAGGUUAGAGAAGGAACA&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999867955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6363_c0_g1_4586_TPlot.pdf
TRINITY_DN6363_c0_g1:4587	si_s74	TRINITY_DN6363_c0_g1	4576	4596	4587	-25.00	-17.00	0.68	10.5	4-13,4593-4584;16-21,4581-4576	1-3,4596-4594[UP5];14-15,4583-4582[SIL]	((((((..((((((((((...&...))))))))))..))))))	GAGAGGUUAGAGAAGGAACAA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6363_c0_g1_4587_TPlot.pdf
TRINITY_DN6363_c0_g1:4758	si_s69	TRINITY_DN6363_c0_g1	4747	4767	4758	-23.40	-16.70	0.713675213675214	9	3-7,4765-4761;10-21,4758-4747	1-2,4767-4766[UP5];8-9,4760-4759[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GAAAGAAAAGGACAAGAAGAA&AACUUCUAUUUUUUUUCUUUC	3	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6363_c0_g1_4758_TPlot.pdf
TRINITY_DN6363_c0_g1:4843	si_s90	TRINITY_DN6363_c0_g1	4826	4852	4843	-35.30	-23.40	0.662889518413598	16	1-12,4852-4841;13-18,4835-4830;19-20,4828-4827	x-x,4840-4836[BULt];x-x,4829-4829[BULt];21-21,4826-4826[UP3]	.((.((((((.....((((((((((((&))))))))))))-----))))))-)).	ACGAAAGCGAGAAAAAGGAGAGGGAGG&CUUUCUUCUUCU-----UCGCUU-CGG	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6363_c0_g1_4843_TPlot.pdf
TRINITY_DN6363_c0_g1:4844	si_s79	TRINITY_DN6363_c0_g1	4834	4853	4844	-26.20	-19.40	0.740458015267176	6.5	1-15,4853-4839;17-21,4838-4834	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	GAGAA-AAAGGAGAGGGAGGA&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6363_c0_g1_4844_TPlot.pdf
TRINITY_DN6363_c0_g1:4847	si_s81	TRINITY_DN6363_c0_g1	4835	4856	4847	-28.90	-19.20	0.664359861591695	8.5	3-16,4854-4841;18-21,4838-4835	1-2,4856-4855[UP5];17-17,4840-4839[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	AGAAAAAGGAGAGGGAGGAACA&UUUUCUUUCCUUUCUU-CUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6363_c0_g1_4847_TPlot.pdf
TRINITY_DN6363_c0_g1:4850	si_s73	TRINITY_DN6363_c0_g1	4839	4859	4850	-24.00	-16.50	0.6875	13.5	6-21,4854-4839	1-5,4859-4855[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGGAGAGGGAGGAACACGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6363_c0_g1_4850_TPlot.pdf
TRINITY_DN6363_c0_g1:4879	si_a499	TRINITY_DN6363_c0_g1	4868	4890	4879	-35.20	-23.18	0.658522727272727	12.5	1-9,4890-4882;12-20,4877-4869	10-11,4881-4878[AILt];21-21,4868-4868[UP3]	.(((((((((....(((((((((&)))))))))--..))))))))).	ACAGGGAAGAAAAAAGGGACGAC&GUCGUUUUU--CGUCUUCCUUGG	4	0.999999999998731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN6363_c0_g1_4879_TPlot.pdf
TRINITY_DN6363_c0_g1:4882	si_a498	TRINITY_DN6363_c0_g1	4869	4891	4882	-33.50	-22.78	0.68	12.5	2-10,4890-4882;13-21,4877-4869	1-1,4891-4891[UP5];11-12,4881-4878[AILt]	(((((((((....(((((((((.&.)))))))))--..)))))))))	CAGGGAAGAAAAAAGGGACGACG&UGUCGUUUUU--CGUCUUCCUUG	3	0.999999995464925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6363_c0_g1_4882_TPlot.pdf
TRINITY_DN6363_c0_g1:5160	si_a67	TRINITY_DN6363_c0_g1	5148	5169	5160	-27.20	-18.00	0.661764705882353	7	1-4,5169-5166;6-12,5164-5158;13-21,5156-5148	5-5,5165-5165[SIL];x-x,5157-5157[BULt]	(((((((((.(((((((.((((&)))).)))))))-)))))))))	GAGAAGCAGCUUUGAAAAGAGU&GCUUCUUUCAAA-UUGUUUUUC	4	0.999999999997218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN6363_c0_g1_5160_TPlot.pdf
TRINITY_DN6363_c0_g1:5263	si_s1	TRINITY_DN6363_c0_g1	5253	5272	5263	-18.70	-14.00	0.748663101604278	5	1-16,5272-5257;18-20,5256-5254	17-17,x-x[BULq];21-21,5253-5253[UP3]	.(((-((((((((((((((((&)))))))))))))))).))).	AAAU-AUAAGUGAUAUAAGGA&UUUUUAUAUUACUUAUUAUUA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN6363_c0_g1_5263_TPlot.pdf
TRINITY_DN6363_c0_g1:5484	si_s74	TRINITY_DN6363_c0_g1	5473	5495	5484	-25.00	-20.40	0.816	7.5	1-9,5495-5487;11-21,5483-5473	10-10,5486-5484[AILt]	(((((((((((...(((((((((&)))))))))--.)))))))))))	GAAAGGAGAGACUCAAAAGAUAG&CUAUUUUUU--UUCUUUCCUUUC	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6363_c0_g1_5484_TPlot.pdf
TRINITY_DN6363_c0_g1:5488	si_s72	TRINITY_DN6363_c0_g1	5475	5497	5488	-24.10	-16.20	0.672199170124481	10.5	3-11,5495-5487;13-21,5483-5475	1-2,5497-5496[UP5];12-12,5486-5484[AILt]	(((((((((...(((((((((..&..)))))))))--.)))))))))	AAGGAGAGACUCAAAAGAUAGCA&UUCUAUUUUUU--UUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6363_c0_g1_5488_TPlot.pdf
TRINITY_DN6363_c0_g1:5513	si_s797	TRINITY_DN6363_c0_g1	5502	5523	5513	-30.00	-20.10	0.67	9	1-4,5523-5520;6-17,5517-5506	5-5,5519-5518[AILt];18-21,5505-5502[UP3]	....((((((((((((..((((&))))-.))))))))))))....	AUCAGAAGAUAGAAUAAAGAGC&GCUC-GUAUUUUAUCUUCGUUA	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN6363_c0_g1_5513_TPlot.pdf
TRINITY_DN6363_c0_g1:5515	si_s795	TRINITY_DN6363_c0_g1	5504	5525	5515	-30.30	-20.20	0.666666666666667	10	3-6,5523-5520;8-19,5517-5506	1-2,5525-5524[UP5];7-7,5519-5518[AILt];20-21,5505-5504[UP3]	..((((((((((((..((((..&..))))-.))))))))))))..	CAGAAGAUAGAAUAAAGAGCAG&AAGCUC-GUAUUUUAUCUUCGU	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN6363_c0_g1_5515_TPlot.pdf
TRINITY_DN6363_c0_g1:5608	si_a496	TRINITY_DN6363_c0_g1	5597	5617	5608	-32.40	-24.70	0.762345679012346	6.5	3-15,5615-5603;17-21,5601-5597	1-2,5617-5616[UP5];16-16,5602-5602[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGGAACGCGAAGAACGGCACA&UAUGUCGUUUUUCGUCUUCCU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN6363_c0_g1_5608_TPlot.pdf
TRINITY_DN6363_c0_g1:5610	si_a494	TRINITY_DN6363_c0_g1	5599	5619	5610	-29.50	-20.10	0.68135593220339	10.5	5-17,5615-5603;19-21,5601-5599	1-4,5619-5616[UP5];18-18,5602-5602[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GAACGCGAAGAACGGCACAGG&AAUAUGUCGUUUUUCGUCUUC	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN6363_c0_g1_5610_TPlot.pdf
TRINITY_DN6363_c0_g1:6048	si_s67	TRINITY_DN6363_c0_g1	6038	6057	6048	-25.60	-17.50	0.68359375	5.5	1-10,6057-6048;12-16,6046-6042;19-21,6040-6038	11-11,6047-6047[SIL];17-18,6041-6041[AILq]	(((.-(((((.((((((((((&)))))))))).)))))..)))	AAGU-GAAAGCUAGAAGUUGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6363_c0_g1_6048_TPlot.pdf
TRINITY_DN6363_c0_g1:6051	si_s64	TRINITY_DN6363_c0_g1	6040	6060	6051	-24.10	-16.60	0.688796680497925	9	4-13,6057-6048;15-19,6046-6042	1-3,6060-6058[UP5];14-14,6047-6047[SIL];20-21,6041-6040[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	GUGAAAGCUAGAAGUUGCAAG&UUAGCAACUUCUAUUUUUUUU	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6363_c0_g1_6051_TPlot.pdf
TRINITY_DN6363_c0_g1:6087	si_s83	TRINITY_DN6363_c0_g1	6076	6096	6087	-30.90	-21.20	0.686084142394822	6	1-5,6096-6092;7-11,6090-6086;13-21,6084-6076	6-6,6091-6091[SIL];12-12,6085-6085[SIL]	(((((((((.(((((.(((((&))))).))))).)))))))))	GAAGAGGAGAAGAGGCAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6363_c0_g1_6087_TPlot.pdf
TRINITY_DN6363_c0_g1:6438	si_a406	TRINITY_DN6363_c0_g1	6427	6447	6438	-19.80	-13.30	0.671717171717172	9	2-14,6446-6434	1-1,6447-6447[UP5];15-21,6433-6427[UP3]	.......(((((((((((((.&.))))))))))))).......	UCCGAGGAUGAACAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6363_c0_g1_6438_TPlot.pdf
TRINITY_DN6363_c0_g1:6595	si_s77	TRINITY_DN6363_c0_g1	6585	6604	6595	-25.50	-16.90	0.662745098039216	7	3-16,6602-6589;18-20,6588-6586	1-2,6604-6603[UP5];17-17,x-x[BULq];21-21,6585-6585[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	UAAG-AAGGAAAGAAGGAACA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6363_c0_g1_6595_TPlot.pdf
TRINITY_DN6363_c0_g1:6596	si_s76	TRINITY_DN6363_c0_g1	6586	6605	6596	-23.60	-16.90	0.716101694915254	8	4-17,6602-6589;19-21,6588-6586	1-3,6605-6603[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	AAG-AAGGAAAGAAGGAACAG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6363_c0_g1_6596_TPlot.pdf
TRINITY_DN6363_c0_g1:6598	si_s74	TRINITY_DN6363_c0_g1	6587	6607	6598	-25.00	-16.80	0.672	12.5	6-20,6602-6588	1-5,6607-6603[UP5];21-21,6587-6587[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAAGGAAAGAAGGAACAGCA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6363_c0_g1_6598_TPlot.pdf
TRINITY_DN6363_c0_g1:6599	si_s73	TRINITY_DN6363_c0_g1	6588	6608	6599	-24.00	-16.60	0.691666666666667	13.5	7-21,6602-6588	1-6,6608-6603[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGGAAAGAAGGAACAGCAA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6363_c0_g1_6599_TPlot.pdf
TRINITY_DN6363_c0_g1:6758	si_s84	TRINITY_DN6363_c0_g1	6743	6767	6758	-32.30	-21.80	0.674922600619195	12.5	1-12,6767-6756;13-19,6751-6745	x-x,6755-6752[BULt];20-21,6744-6743[UP3]	..(((((((....((((((((((((&))))))))))))----)))))))..	AAAAGGAGAGAUCAGAAAGGAGGGA&UCUUUCCUUUCU----UCUUCUUCG	2	0.999999999910554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6363_c0_g1_6758_TPlot.pdf
TRINITY_DN6363_c0_g1:6759	si_s83	TRINITY_DN6363_c0_g1	6744	6768	6759	-30.90	-22.70	0.73462783171521	7.5	1-13,6768-6756;14-20,6751-6745	x-x,6755-6752[BULt];21-21,6744-6744[UP3]	.(((((((....(((((((((((((&)))))))))))))----))))))).	AAAGGAGAGAUCAGAAAGGAGGGAA&UUCUUUCCUUUCU----UCUUCUUC	3	0.999999984721091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6363_c0_g1_6759_TPlot.pdf
TRINITY_DN6363_c0_g1:6761	si_s81	TRINITY_DN6363_c0_g1	6746	6770	6761	-28.90	-23.60	0.816608996539792	6.5	1-15,6770-6756;16-21,6751-6746	x-x,6755-6752[BULt]	((((((....(((((((((((((((&)))))))))))))))----))))))	AGGAGAGAUCAGAAAGGAGGGAAAA&UUUUCUUUCCUUUCU----UCUUCU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6363_c0_g1_6761_TPlot.pdf
TRINITY_DN6363_c0_g1:6762	si_s80	TRINITY_DN6363_c0_g1	6747	6771	6762	-28.20	-22.50	0.797872340425532	7.5	2-16,6770-6756;17-21,6751-6747	1-1,6771-6771[UP5];x-x,6755-6752[BULt]	(((((....(((((((((((((((.&.)))))))))))))))----)))))	GGAGAGAUCAGAAAGGAGGGAAAAG&UUUUUCUUUCCUUUCU----UCUUC	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6363_c0_g1_6762_TPlot.pdf
TRINITY_DN6363_c0_g1:6763	si_s79	TRINITY_DN6363_c0_g1	6750	6772	6763	-26.20	-22.50	0.858778625954199	5.5	1-17,6772-6756;18-21,6753-6750	x-x,6755-6754[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	GAGAUCAGAAAGGAGGGAAAAGA&UUUUUUCUUUCCUUUCU--UCUU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6363_c0_g1_6763_TPlot.pdf
TRINITY_DN6363_c0_g1:6764	si_s78	TRINITY_DN6363_c0_g1	6751	6773	6764	-26.20	-22.30	0.851145038167939	5	1-18,6773-6756;19-21,6753-6751	x-x,6755-6754[BULt]	(((..((((((((((((((((((&))))))))))))))))))--)))	AGAUCAGAAAGGAGGGAAAAGAA&UUUUUUUCUUUCCUUUCU--UCU	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6363_c0_g1_6764_TPlot.pdf
TRINITY_DN6363_c0_g1:6766	si_s76	TRINITY_DN6363_c0_g1	6755	6775	6766	-23.60	-22.20	0.940677966101695	5	2-20,6774-6756	1-1,6775-6775[UP5];21-21,6755-6755[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CAGAAAGGAGGGAAAAGAAAC&AUUUUUUUUCUUUCCUUUCUU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6363_c0_g1_6766_TPlot.pdf
TRINITY_DN6363_c0_g1:6767	si_s75	TRINITY_DN6363_c0_g1	6756	6776	6767	-24.00	-22.20	0.925	5.5	3-21,6774-6756	1-2,6776-6775[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AGAAAGGAGGGAAAAGAAACA&UAUUUUUUUUCUUUCCUUUCU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6363_c0_g1_6767_TPlot.pdf
TRINITY_DN6363_c0_g1:6768	si_s74	TRINITY_DN6363_c0_g1	6757	6777	6768	-25.00	-21.00	0.84	7	4-21,6774-6757	1-3,6777-6775[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAAGGAGGGAAAAGAAACAU&CUAUUUUUUUUCUUUCCUUUC	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6363_c0_g1_6768_TPlot.pdf
TRINITY_DN6363_c0_g1:6769	si_s73	TRINITY_DN6363_c0_g1	6758	6778	6769	-24.00	-17.80	0.741666666666667	9	5-21,6774-6758	1-4,6778-6775[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGAGGGAAAAGAAACAUA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999845704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6363_c0_g1_6769_TPlot.pdf
TRINITY_DN6363_c0_g1:6770	si_s72	TRINITY_DN6363_c0_g1	6759	6782	6770	-24.10	-17.34	0.719502074688797	10	1-4,6782-6779;6-21,6774-6759	5-5,6778-6775[AILt]	((((((((((((((((....((((&))))---.))))))))))))))))	AAGGAGGGAAAAGAAACAUAAGAA&UUCU---AUUUUUUUUCUUUCCUU	2	0.999999992851378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6363_c0_g1_6770_TPlot.pdf
TRINITY_DN6363_c0_g1:6771	si_s71	TRINITY_DN6363_c0_g1	6760	6783	6771	-25.70	-19.34	0.752529182879377	10	1-5,6783-6779;7-21,6774-6760	6-6,6778-6775[AILt]	(((((((((((((((....(((((&)))))---.)))))))))))))))	AGGAGGGAAAAGAAACAUAAGAAG&CUUCU---AUUUUUUUUCUUUCCU	2	0.999336734711078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6363_c0_g1_6771_TPlot.pdf
TRINITY_DN6363_c0_g1:6772	si_s70	TRINITY_DN6363_c0_g1	6761	6784	6772	-25.80	-18.04	0.69922480620155	11	2-6,6783-6779;8-21,6774-6761	1-1,6784-6784[UP5];7-7,6778-6775[AILt]	((((((((((((((....(((((.&.)))))---.))))))))))))))	GGAGGGAAAAGAAACAUAAGAAGA&ACUUCU---AUUUUUUUUCUUUCC	3	0.999999999998534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6363_c0_g1_6772_TPlot.pdf
TRINITY_DN6363_c0_g1:6939	si_a785	TRINITY_DN6363_c0_g1	6928	6946	6939	-25.90	-16.90	0.652509652509653	8	1-7,6946-6940;10-20,6939-6929	8-9,x-x[BULq];21-21,6928-6928[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	AAAAAUAGAGAA--GGAAGGG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6363_c0_g1_6939_TPlot.pdf
TRINITY_DN6363_c0_g1:6940	si_a784	TRINITY_DN6363_c0_g1	6929	6947	6940	-24.70	-16.90	0.684210526315789	7.5	2-8,6946-6940;11-21,6939-6929	1-1,6947-6947[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	AAAAUAGAGAA--GGAAGGGA&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999999398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6363_c0_g1_6940_TPlot.pdf
TRINITY_DN6363_c0_g1:6943	si_s82	TRINITY_DN6363_c0_g1	6932	6951	6943	-28.90	-19.40	0.671280276816609	7.5	1-6,6951-6946;8-18,6945-6935	7-7,x-x[BULq];19-21,6934-6932[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	AUAGAGAAGGAAGG-GAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6363_c0_g1_6943_TPlot.pdf
TRINITY_DN6363_c0_g1:6945	si_s76	TRINITY_DN6363_c0_g1	6935	6954	6945	-23.60	-17.00	0.720338983050847	9.5	4-17,6951-6938;19-21,6937-6935	1-3,6954-6952[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	GAG-AAGGAAGGGAGAAAUCU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6363_c0_g1_6945_TPlot.pdf
TRINITY_DN6363_c0_g1:6946	si_a326	TRINITY_DN6363_c0_g1	6935	6955	6946	-26.20	-17.90	0.683206106870229	9	3-11,6953-6945;13-18,6943-6938;20-21,6936-6935	1-2,6955-6954[UP5];12-12,6944-6944[SIL];19-19,6937-6937[SIL]	((.((((((.(((((((((..&..))))))))).)))))).))	GAGAAGGAAGGGAGAAAUCUA&AUGAUUUUUUUAUUCCUUGUC	3	0.999999030805929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN6363_c0_g1_6946_TPlot.pdf
TRINITY_DN6363_c0_g1:6947	si_s74	TRINITY_DN6363_c0_g1	6936	6956	6947	-25.00	-16.50	0.66	13	6-20,6951-6937	1-5,6956-6952[UP5];21-21,6936-6936[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAAGGAAGGGAGAAAUCUAA&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6363_c0_g1_6947_TPlot.pdf
TRINITY_DN6363_c0_g1:6948	si_s73	TRINITY_DN6363_c0_g1	6937	6957	6948	-24.00	-16.30	0.679166666666667	14	7-21,6951-6937	1-6,6957-6952[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGGAAGGGAGAAAUCUAAA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6363_c0_g1_6948_TPlot.pdf
TRINITY_DN6363_c0_g1:7020	si_a72	TRINITY_DN6363_c0_g1	7009	7030	7020	-21.90	-14.30	0.65296803652968	8.5	2-7,7029-7024;9-19,7021-7011	1-1,7030-7030[UP5];8-8,7023-7022[AILt];20-21,7010-7009[UP3]	..(((((((((((..((((((.&.))))))-.)))))))))))..	AAAAUGGAAAACAUUUUUGGAU&UUUCAAA-UUGUUUUUCAUUAU	2	0.999999999711825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN6363_c0_g1_7020_TPlot.pdf
TRINITY_DN6363_c0_g1:7073	si_a764	TRINITY_DN6363_c0_g1	7061	7082	7073	-28.90	-19.80	0.685121107266436	6.5	1-11,7082-7072;13-16,7070-7067;17-19,7065-7063	12-12,7071-7071[SIL];x-x,7066-7066[BULt];20-21,7062-7061[UP3]	..(((.((((.(((((((((((&))))))))))).))))-)))..	AAGAACUCGAACAAGAACCCAA&UUGGGUUUUUGAUUGA-UUCAA	2	0.997154840359294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6363_c0_g1_7073_TPlot.pdf
TRINITY_DN6363_c0_g1:7074	si_a763	TRINITY_DN6363_c0_g1	7062	7083	7074	-28.80	-20.70	0.71875	4.5	1-12,7083-7072;14-17,7070-7067;18-20,7065-7063	13-13,7071-7071[SIL];x-x,7066-7066[BULt];21-21,7062-7062[UP3]	.(((.((((.((((((((((((&)))))))))))).))))-))).	AGAACUCGAACAAGAACCCAAA&UUUGGGUUUUUGAUUGA-UUCA	2	0.948933653045264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN6363_c0_g1_7074_TPlot.pdf
TRINITY_DN6363_c0_g1:7075	si_a762	TRINITY_DN6363_c0_g1	7063	7084	7075	-29.70	-22.70	0.764309764309764	3.5	1-13,7084-7072;15-18,7070-7067;19-21,7065-7063	14-14,7071-7071[SIL];x-x,7066-7066[BULt]	(((.((((.(((((((((((((&))))))))))))).))))-)))	GAACUCGAACAAGAACCCAAAG&CUUUGGGUUUUUGAUUGA-UUC	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN6363_c0_g1_7075_TPlot.pdf
TRINITY_DN6363_c0_g1:7076	si_a761	TRINITY_DN6363_c0_g1	7065	7085	7076	-30.10	-21.70	0.720930232558139	5.5	2-14,7084-7072;16-19,7070-7067	1-1,7085-7085[UP5];15-15,7071-7071[SIL];20-21,7066-7065[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	ACUCGAACAAGAACCCAAAGU&CCUUUGGGUUUUUGAUUGAUU	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN6363_c0_g1_7076_TPlot.pdf
TRINITY_DN6363_c0_g1:7077	si_a760	TRINITY_DN6363_c0_g1	7066	7086	7077	-31.10	-21.70	0.697749196141479	6.5	3-15,7084-7072;17-20,7070-7067	1-2,7086-7085[UP5];16-16,7071-7071[SIL];21-21,7066-7066[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	CUCGAACAAGAACCCAAAGUA&UCCUUUGGGUUUUUGAUUGAU	2	0.981132633276911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN6363_c0_g1_7077_TPlot.pdf
TRINITY_DN6363_c0_g1:7078	si_a759	TRINITY_DN6363_c0_g1	7067	7087	7078	-32.60	-21.60	0.662576687116564	7	4-16,7084-7072;18-21,7070-7067	1-3,7087-7085[UP5];17-17,7071-7071[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UCGAACAAGAACCCAAAGUAC&CUCCUUUGGGUUUUUGAUUGA	3	0.999999284624946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN6363_c0_g1_7078_TPlot.pdf
TRINITY_DN6363_c0_g1:7128	si_a456	TRINITY_DN6363_c0_g1	7117	7137	7128	-22.80	-15.20	0.666666666666667	7.5	2-15,7136-7123	1-1,7137-7137[UP5];16-21,7122-7117[UP3]	......((((((((((((((.&.))))))))))))))......	CAACAAAUGUAUAACAACAAA&AUUGUUGUUAUAUAUAAUAUG	2	0.989873797618439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN6363_c0_g1_7128_TPlot.pdf
TRINITY_DN6363_c0_g1:7130	si_a454	TRINITY_DN6363_c0_g1	7119	7139	7130	-21.30	-15.20	0.713615023474178	9.5	4-17,7136-7123	1-3,7139-7137[UP5];18-21,7122-7119[UP3]	....((((((((((((((...&...))))))))))))))....	ACAAAUGUAUAACAACAAACC&UAAUUGUUGUUAUAUAUAAUA	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN6363_c0_g1_7130_TPlot.pdf
TRINITY_DN6363_c0_g1:7131	si_a453	TRINITY_DN6363_c0_g1	7120	7140	7131	-21.10	-15.20	0.720379146919431	10.5	5-18,7136-7123	1-4,7140-7137[UP5];19-21,7122-7120[UP3]	...((((((((((((((....&....))))))))))))))...	CAAAUGUAUAACAACAAACCU&AUAAUUGUUGUUAUAUAUAAU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN6363_c0_g1_7131_TPlot.pdf
TRINITY_DN6363_c0_g1:7132	si_a452	TRINITY_DN6363_c0_g1	7121	7141	7132	-23.00	-15.20	0.660869565217391	11.5	6-19,7136-7123	1-5,7141-7137[UP5];20-21,7122-7121[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAUGUAUAACAACAAACCUG&GAUAAUUGUUGUUAUAUAUAA	2	0.999285307816599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN6363_c0_g1_7132_TPlot.pdf
TRINITY_DN6363_c0_g1:7185	si_s806	TRINITY_DN6363_c0_g1	7175	7193	7185	-28.60	-19.10	0.667832167832168	6	1-6,7193-7188;8-11,7187-7184;13-20,7183-7176	7-7,x-x[BULq];12-12,x-x[BULq];21-21,7175-7175[UP3]	.((((((((-((((-((((((&)))))).)))).)))))))).	CGGAAAGGG-AACG-AGAUAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6363_c0_g1_7185_TPlot.pdf
TRINITY_DN6363_c0_g1:7186	si_s805	TRINITY_DN6363_c0_g1	7176	7194	7186	-28.60	-20.00	0.699300699300699	4	1-7,7194-7188;9-12,7187-7184;14-21,7183-7176	8-8,x-x[BULq];13-13,x-x[BULq]	((((((((-((((-(((((((&))))))).)))).))))))))	GGAAAGGG-AACG-AGAUAAA&UUUAUCUUCGUUACCUUUUCU	2	0.998565120328725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6363_c0_g1_7186_TPlot.pdf
TRINITY_DN6363_c0_g1:7187	si_s804	TRINITY_DN6363_c0_g1	7176	7195	7187	-27.90	-19.70	0.706093189964158	5.5	2-8,7194-7188;10-12,7187-7185;15-21,7182-7176	1-1,7195-7195[UP5];9-9,x-x[BULq];13-14,7184-7183[SIL]	(((((((..(((-(((((((.&.))))))).)))..)))))))	GGAAAGGGAACG-AGAUAAAG&UUUUAUCUUCGUUACCUUUUC	2	0.996570853449153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6363_c0_g1_7187_TPlot.pdf
TRINITY_DN6363_c0_g1:7188	si_s803	TRINITY_DN6363_c0_g1	7177	7196	7188	-26.00	-17.30	0.665384615384615	7.5	3-9,7194-7188;11-13,7187-7185;16-21,7182-7177	1-2,7196-7195[UP5];10-10,x-x[BULq];14-15,7184-7183[SIL]	((((((..(((-(((((((..&..))))))).)))..))))))	GAAAGGGAACG-AGAUAAAGA&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6363_c0_g1_7188_TPlot.pdf
TRINITY_DN6363_c0_g1:7223	si_s69	TRINITY_DN6363_c0_g1	7212	7231	7223	-23.40	-15.60	0.666666666666667	8.5	3-6,7229-7226;9-21,7224-7212	1-2,7231-7230[UP5];7-8,7225-7225[AILq]	(((((((((((((.-((((..&..))))..)))))))))))))	GAAAGAGAAGAAAC-GAAGAG&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6363_c0_g1_7223_TPlot.pdf
TRINITY_DN6363_c0_g1:7229	si_s78	TRINITY_DN6363_c0_g1	7217	7238	7229	-26.20	-17.10	0.652671755725191	7	1-11,7238-7228;12-12,7226-7226;14-21,7224-7217	x-x,7227-7227[BULt];13-13,7225-7225[SIL]	((((((((.(.(((((((((((&)))))))))))-).))))))))	AGAAGAAACGAAGAGAGAAGGA&UUUUUUUCUUU-CCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6363_c0_g1_7229_TPlot.pdf
TRINITY_DN6363_c0_g1:7230	si_s79	TRINITY_DN6363_c0_g1	7216	7239	7230	-26.20	-17.54	0.669465648854962	11.5	1-11,7239-7229;13-21,7224-7216	12-12,7228-7225[AILt]	(((((((((....(((((((((((&)))))))))))---.)))))))))	GAGAAGAAACGAAGAGAGAAGGAA&UUUUUUCUUUC---CUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6363_c0_g1_7230_TPlot.pdf
TRINITY_DN6363_c0_g1:7316	si_a73	TRINITY_DN6363_c0_g1	7306	7325	7316	-21.90	-14.30	0.65296803652968	6.5	1-4,7325-7322;6-13,7320-7313;15-21,7312-7306	5-5,7321-7321[SIL];14-14,x-x[BULq]	(((((((-((((((((.((((&)))).)))))))).)))))))	AGUAAUG-AGAACAGUAUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6363_c0_g1_7316_TPlot.pdf
TRINITY_DN6363_c0_g1:7489	si_s79	TRINITY_DN6363_c0_g1	7478	7498	7489	-26.20	-17.80	0.679389312977099	9.5	4-10,7495-7489;12-21,7487-7478	1-3,7498-7496[UP5];11-11,7488-7488[SIL]	((((((((((.(((((((...&...))))))).))))))))))	AAGAAGAGAGAAGAGAAGCUA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6363_c0_g1_7489_TPlot.pdf
TRINITY_DN6365_c0_g1:1430	si_a628	TRINITY_DN6365_c0_g1	1419	1439	1430	-27.10	-19.10	0.70479704797048	10	1-4,1439-1436;6-15,1434-1425	5-5,1435-1435[SIL];16-21,1424-1419[UP3]	......((((((((((.((((&)))).))))))))))......	UUCACCAUCGGCAUAACGCGC&GCGUAUUAUGUCGAUUUUUUU	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN6365_c0_g1_1430_TPlot.pdf
TRINITY_DN6365_c0_g1:1431	si_a627	TRINITY_DN6365_c0_g1	1420	1440	1431	-29.50	-19.30	0.654237288135593	10	2-5,1439-1436;7-16,1434-1425	1-1,1440-1440[UP5];6-6,1435-1435[SIL];17-21,1424-1420[UP3]	.....((((((((((.((((.&.)))).)))))))))).....	UCACCAUCGGCAUAACGCGCG&GGCGUAUUAUGUCGAUUUUUU	4	0.999999900358033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN6365_c0_g1_1431_TPlot.pdf
TRINITY_DN6365_c0_g1:1924	si_a884	TRINITY_DN6365_c0_g1	1913	1933	1924	-25.60	-17.80	0.6953125	7	2-11,1932-1923;13-17,1921-1917	1-1,1933-1933[UP5];12-12,1922-1922[SIL];18-21,1916-1913[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	GGCCUACUACAUUGAUUGCAU&UUGCAAUCAAUAUAGUAAUAA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN6365_c0_g1_1924_TPlot.pdf
TRINITY_DN6365_c0_g1:1925	si_a883	TRINITY_DN6365_c0_g1	1914	1934	1925	-27.20	-17.80	0.654411764705882	7	3-12,1932-1923;14-18,1921-1917	1-2,1934-1933[UP5];13-13,1922-1922[SIL];19-21,1916-1914[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	GCCUACUACAUUGAUUGCAUC&GUUGCAAUCAAUAUAGUAAUA	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN6365_c0_g1_1925_TPlot.pdf
TRINITY_DN6365_c0_g1:3317	si_a365	TRINITY_DN6365_c0_g1	3306	3326	3317	-28.60	-18.80	0.657342657342657	12	5-16,3322-3311	1-4,3326-3323[UP5];17-21,3310-3306[UP3]	.....((((((((((((....&....)))))))))))).....	AUGGAUUUGAUCCGAUCUGAA&UUUUGAUCGGAUCAAAAAUGA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a365_TRINITY_DN6365_c0_g1_3317_TPlot.pdf
TRINITY_DN6365_c0_g1:3320	si_a362	TRINITY_DN6365_c0_g1	3309	3329	3320	-28.00	-19.80	0.707142857142857	8	3-6,3327-3324;8-19,3322-3311	1-2,3329-3328[UP5];7-7,3323-3323[SIL];20-21,3310-3309[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	GAUUUGAUCCGAUCUGAAUUA&CUAUUUUGAUCGGAUCAAAAA	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN6365_c0_g1_3320_TPlot.pdf
TRINITY_DN6365_c0_g1:3322	si_a360	TRINITY_DN6365_c0_g1	3311	3331	3322	-29.10	-19.60	0.673539518900344	10	5-8,3327-3324;10-21,3322-3311	1-4,3331-3328[UP5];9-9,3323-3323[SIL]	((((((((((((.((((....&....)))).))))))))))))	UUUGAUCCGAUCUGAAUUAAU&UUCUAUUUUGAUCGGAUCAAA	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN6365_c0_g1_3322_TPlot.pdf
TRINITY_DN6365_c0_g1:3442	si_a150	TRINITY_DN6365_c0_g1	3430	3451	3442	-29.90	-19.70	0.658862876254181	10	1-11,3451-3441;13-18,3438-3433	12-12,3440-3439[AILt];19-21,3432-3430[UP3]	...((((((..(((((((((((&)))))))))))-.))))))...	CAAUGACCUGAAAGACAAUGAC&GUUGUUGUUUU-AAGGUCAAUC	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN6365_c0_g1_3442_TPlot.pdf
TRINITY_DN6365_c0_g1:3444	si_a148	TRINITY_DN6365_c0_g1	3432	3453	3444	-30.30	-21.40	0.706270627062706	7	2-13,3452-3441;15-20,3438-3433	1-1,3453-3453[UP5];14-14,3440-3439[AILt];21-21,3432-3432[UP3]	.((((((..((((((((((((.&.))))))))))))-.)))))).	AUGACCUGAAAGACAAUGACGU&UCGUUGUUGUUUU-AAGGUCAA	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN6365_c0_g1_3444_TPlot.pdf
TRINITY_DN6365_c0_g1:3445	si_a147	TRINITY_DN6365_c0_g1	3433	3454	3445	-30.40	-21.20	0.697368421052632	8	3-14,3452-3441;16-21,3438-3433	1-2,3454-3453[UP5];15-15,3440-3439[AILt]	((((((..((((((((((((..&..))))))))))))-.))))))	UGACCUGAAAGACAAUGACGUG&AUCGUUGUUGUUUU-AAGGUCA	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN6365_c0_g1_3445_TPlot.pdf
TRINITY_DN6365_c0_g1:3446	si_a146	TRINITY_DN6365_c0_g1	3434	3455	3446	-29.70	-19.80	0.666666666666667	9.5	4-15,3452-3441;17-21,3438-3434	1-3,3455-3453[UP5];16-16,3440-3439[AILt]	(((((..((((((((((((...&...))))))))))))-.)))))	GACCUGAAAGACAAUGACGUGA&AAUCGUUGUUGUUUU-AAGGUC	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN6365_c0_g1_3446_TPlot.pdf
TRINITY_DN63675_c0_g1:303	si_a142	TRINITY_DN63675_c0_g1	292	312	303	-23.50	-15.60	0.663829787234043	10	3-11,310-302;13-20,300-293	1-2,312-311[UP5];12-12,301-301[SIL];21-21,292-292[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AUAAAGCAGAGGCGAUUGAGC&AAUUAAUCGUUGUUGUUUUAA	4	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN63675_c0_g1_303_TPlot.pdf
TRINITY_DN63680_c0_g1:234	si_a73	TRINITY_DN63680_c0_g1	223	243	234	-21.90	-14.50	0.662100456621005	7	1-4,243-240;6-12,238-232;15-21,229-223	5-5,239-239[SIL];13-14,231-230[SIL]	(((((((..(((((((.((((&)))).)))))))..)))))))	GGUAAUGUUGAACAGUGUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999998756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN63680_c0_g1_234_TPlot.pdf
TRINITY_DN6368_c0_g2:1620	si_a396	TRINITY_DN6368_c0_g2	1609	1628	1620	-24.70	-16.70	0.676113360323887	5	1-5,1628-1624;7-18,1623-1612;20-21,1610-1609	6-6,x-x[BULq];19-19,1611-1611[SIL]	((.((((((((((((-(((((&))))).)))))))))))).))	GGGAAGACGAUUCUA-AUUCU&AGAAUAUAGAAUUGUUUUGUU	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN6368_c0_g2_1620_TPlot.pdf
TRINITY_DN6368_c0_g2:1623	si_a393	TRINITY_DN6368_c0_g2	1612	1631	1623	-22.70	-15.80	0.696035242290749	8	4-8,1628-1624;10-21,1623-1612	1-3,1631-1629[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	AAGACGAUUCUA-AUUCUGAU&UUAAGAAUAUAGAAUUGUUUU	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN6368_c0_g2_1623_TPlot.pdf
TRINITY_DN6368_c0_g2:1624	si_a392	TRINITY_DN6368_c0_g2	1613	1632	1624	-22.80	-14.90	0.653508771929825	10	5-9,1628-1624;11-21,1623-1613	1-4,1632-1629[UP5];10-10,x-x[BULq]	(((((((((((-(((((....&....))))).)))))))))))	AGACGAUUCUA-AUUCUGAUA&AUUAAGAAUAUAGAAUUGUUU	2	0.987487715898913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN6368_c0_g2_1624_TPlot.pdf
TRINITY_DN6368_c0_g2:1701	si_a497	TRINITY_DN6368_c0_g2	1692	1710	1701	-32.00	-21.40	0.66875	5.5	2-11,1709-1700;13-16,1699-1696;18-21,1695-1692	1-1,1710-1710[UP5];12-12,x-x[BULq];17-17,x-x[BULq]	((((-((((-((((((((((.&.)))))))))).)))).))))	GAGG-AGAC-AAAAGCGACAG&AUGUCGUUUUUCGUCUUCCUU	2	0.999999997455614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6368_c0_g2_1701_TPlot.pdf
TRINITY_DN6368_c0_g2:3280	si_s696	TRINITY_DN6368_c0_g2	3269	3289	3280	-26.30	-17.80	0.67680608365019	9.5	1-3,3289-3287;6-20,3284-3270	4-5,3286-3285[SIL];21-21,3269-3269[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	AGCUAGUGAGUUGGCUCUUUA&UAAUUAGUCGAUUUAUUAGUG	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN6368_c0_g2_3280_TPlot.pdf
TRINITY_DN6368_c0_g2:4804	si_a860	TRINITY_DN6368_c0_g2	4793	4813	4804	-24.30	-16.20	0.666666666666667	5.5	1-10,4813-4804;13-17,4801-4797;19-21,4795-4793	11-12,4803-4802[SIL];18-18,4796-4796[SIL]	(((.(((((..((((((((((&))))))))))..))))).)))	AGUGUUUAAAUAUUGGAUUUC&GAAAUCCAAUUAUUAAAGAUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN6368_c0_g2_4804_TPlot.pdf
TRINITY_DN6368_c0_g2:4858	si_s197	TRINITY_DN6368_c0_g2	4847	4869	4858	-29.20	-19.10	0.654109589041096	10.5	2-7,4868-4863;8-20,4860-4848	1-1,4869-4869[UP5];x-x,4862-4861[BULt];21-21,4847-4847[UP3]	.(((((((((((((..((((((.&.))))))--))))))))))))).	UACUGGUAUAUUCUCUGGAAUGU&UUAUUUU--GGAAUGUACCAGUU	2	0.997754019103068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN6368_c0_g2_4858_TPlot.pdf
TRINITY_DN6368_c0_g2:4859	si_s196	TRINITY_DN6368_c0_g2	4848	4870	4859	-29.30	-19.10	0.651877133105802	11.5	3-8,4868-4863;9-21,4860-4848	1-2,4870-4869[UP5];x-x,4862-4861[BULt]	(((((((((((((..((((((..&..))))))--)))))))))))))	ACUGGUAUAUUCUCUGGAAUGUU&AUUAUUUU--GGAAUGUACCAGU	2	0.995434295473334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN6368_c0_g2_4859_TPlot.pdf
TRINITY_DN6369_c0_g1:333	si_a50	TRINITY_DN6369_c0_g1	319	341	333	-41.50	-28.80	0.693975903614458	8.5	1-5,341-337;7-9,336-334;11-17,332-326;18-21,322-319	6-6,x-x[BULq];10-10,333-333[SIL];x-x,325-323[BULt]	((((...(((((((.(((-(((((&))))).))).)))))))---))))	GAGCAAAGAGUCGAGUCC-GGACC&GGUCUAGGAGUCGACUC---GCUU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN6369_c0_g1_333_TPlot.pdf
TRINITY_DN6369_c0_g1:726	si_a337	TRINITY_DN6369_c0_g1	712	735	726	-30.80	-20.40	0.662337662337662	12	1-7,735-729;9-11,727-725;12-19,721-714	8-8,728-728[SIL];x-x,724-722[BULt];20-21,713-712[UP3]	..((((((((...(((.(((((((&))))))).)))---))))))))..	AUUAUUUUCGGAUGGAGGAGGAGU&AUUCCUUGUCC---CGAAAAUAUU	2	0.978896283955849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN6369_c0_g1_726_TPlot.pdf
TRINITY_DN6372_c0_g1:199	si_a407	TRINITY_DN6372_c0_g1	188	208	199	-19.80	-13.40	0.676767676767677	6.5	2-5,207-204;7-7,202-202;9-21,200-188	1-1,208-208[UP5];6-6,203-203[SIL];8-8,201-201[SIL]	(((((((((((((.(.((((.&.)))).).)))))))))))))	AUUUAGAUAUAAAGGUAACAU&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN6372_c0_g1_199_TPlot.pdf
TRINITY_DN6373_c0_g2:4343	si_a485	TRINITY_DN6373_c0_g2	4332	4352	4343	-26.60	-19.70	0.740601503759398	7	1-5,4352-4348;7-20,4346-4333	6-6,4347-4347[SIL];21-21,4332-4332[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CGGCGGCGUAUUUUAGAUAGC&GUUAUAUAGAAUAUGUCGUUU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN6373_c0_g2_4343_TPlot.pdf
TRINITY_DN6373_c0_g2:4346	si_a482	TRINITY_DN6373_c0_g2	4335	4355	4346	-26.70	-18.60	0.696629213483146	8	3-8,4353-4348;10-21,4346-4335	1-2,4355-4354[UP5];9-9,4347-4347[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	CGGCGUAUUUUAGAUAGCACG&AUUGUUAUAUAGAAUAUGUCG	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN6373_c0_g2_4346_TPlot.pdf
TRINITY_DN6373_c0_g2:4542	si_s75	TRINITY_DN6373_c0_g2	4531	4551	4542	-24.00	-17.60	0.733333333333333	8	3-6,4549-4546;8-21,4544-4531	1-2,4551-4550[UP5];7-7,4545-4545[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AGGAGGGGGAGAAACAGAACG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6373_c0_g2_4542_TPlot.pdf
TRINITY_DN63741_c0_g1:408	si_s896	TRINITY_DN63741_c0_g1	399	417	408	-31.60	-22.80	0.721518987341772	4	1-13,417-405;16-20,404-400	14-15,x-x[BULq];21-21,399-399[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	CGAAAU--AAGAGAAGGCCUA&UAGGCUUUCUCUUCAAUUUCA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN63741_c0_g1_408_TPlot.pdf
TRINITY_DN63741_c0_g1:413	si_s891	TRINITY_DN63741_c0_g1	402	422	413	-29.60	-19.80	0.668918918918919	13	6-18,417-405	1-5,422-418[UP5];19-21,404-402[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAUAAGAGAAGGCCUAAAGUA&AUAAAUAGGCUUUCUCUUCAA	4	0.999962730131049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN63741_c0_g1_413_TPlot.pdf
TRINITY_DN63741_c0_g1:417	si_s887	TRINITY_DN63741_c0_g1	406	426	417	-26.80	-19.10	0.712686567164179	17.5	10-21,417-406	1-9,426-418[UP5]	((((((((((((.........&.........))))))))))))	AGAGAAGGCCUAAAGUACAGU&AAAAAUAAAUAGGCUUUCUCU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN63741_c0_g1_417_TPlot.pdf
TRINITY_DN6375_c0_g1:342	si_s899	TRINITY_DN6375_c0_g1	331	351	342	-28.30	-19.56	0.691166077738516	8	1-11,351-341;16-20,336-332	12-15,340-337[SIL];21-21,331-331[UP3]	.(((((....(((((((((((&)))))))))))....))))).	UGUUGAUUUGGAGGAGAAAGU&GCUUUCUCUUCAAUUUCAAUU	4	0.999978654488071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN6375_c0_g1_342_TPlot.pdf
TRINITY_DN6375_c0_g1:351	si_s80	TRINITY_DN6375_c0_g1	340	360	351	-28.20	-18.80	0.666666666666667	9	3-8,358-353;11-21,350-340	1-2,360-359[UP5];9-10,352-351[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GGAGGAGAAAGUUGAGAAAUG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6375_c0_g1_351_TPlot.pdf
TRINITY_DN6375_c0_g1:476	si_s85	TRINITY_DN6375_c0_g1	464	485	476	-33.80	-23.10	0.683431952662722	8	3-10,483-476;12-17,474-469;18-21,467-464	1-2,485-484[UP5];11-11,475-475[SIL];x-x,468-468[BULt]	((((.((((((.((((((((..&..)))))))).))))))-))))	GCGAGAGAAGAUGAAAGGGGUA&CUUUCCUUUCUUCUUCU-UCGC	4	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6375_c0_g1_476_TPlot.pdf
TRINITY_DN6375_c0_g1:527	si_s76	TRINITY_DN6375_c0_g1	516	536	527	-23.60	-18.10	0.766949152542373	9	3-12,534-525;14-21,523-516	1-2,536-535[UP5];13-13,524-524[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GGGAGGGGCGAGAAAGAGAGA&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6375_c0_g1_527_TPlot.pdf
TRINITY_DN6375_c0_g1:528	si_a68	TRINITY_DN6375_c0_g1	517	538	528	-25.40	-17.12	0.674015748031496	12.5	1-8,538-531;12-20,526-518	9-11,530-527[AILt];21-21,517-517[UP3]	.(((((((((....((((((((&))))))))-...))))))))).	GGAGGGGCGAGAAAGAGAGAAG&CUUCUUUC-AAAUUGUUUUUCA	3	0.999999999592281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN6375_c0_g1_528_TPlot.pdf
TRINITY_DN63772_c0_g1:231	si_a792	TRINITY_DN63772_c0_g1	211	240	231	-27.60	-19.30	0.699275362318841	13	3-16,238-225;17-21,215-211	1-2,240-239[UP5];x-x,224-216[BULt]	(((((.........((((((((((((((..&..))))))))))))))---------)))))	CGGAUUUGUCGAUCUGGAAAAUGGAAAAUA&AUUUUUCUAUUUUCCA---------AUCCG	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN63772_c0_g1_231_TPlot.pdf
TRINITY_DN6377_c0_g1:18	si_a450	TRINITY_DN6377_c0_g1	7	27	18	-25.20	-16.60	0.658730158730159	6	2-5,26-23;7-18,21-10	1-1,27-27[UP5];6-6,22-22[SIL];19-21,9-7[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	UCCUAUAACAACAAUAAUCUA&GAGAUAAUUGUUGUUAUAUAU	3	0.999934671218763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN6377_c0_g1_18_TPlot.pdf
TRINITY_DN637_c12_g1:907	si_s494	TRINITY_DN637_c12_g1	895	916	907	-19.80	-13.70	0.691919191919192	7	3-17,914-900;18-19,898-897	1-2,916-915[UP5];x-x,899-899[BULt];20-21,896-895[UP3]	..((.(((((((((((((((..&..)))))))))))))))-))..	UAUGUUUUUGUUUAUGUUUAUG&UUUAAAUAUAAACAAAA-CAAU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN637_c12_g1_907_TPlot.pdf
TRINITY_DN637_c12_g1:908	si_s493	TRINITY_DN637_c12_g1	896	917	908	-19.80	-13.70	0.691919191919192	8	4-18,914-900;19-20,898-897	1-3,917-915[UP5];x-x,899-899[BULt];21-21,896-896[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	AUGUUUUUGUUUAUGUUUAUGU&AUUUAAAUAUAAACAAAA-CAA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN637_c12_g1_908_TPlot.pdf
TRINITY_DN637_c2_g1:2036	si_a769	TRINITY_DN637_c2_g1	2024	2045	2036	-26.70	-18.30	0.685393258426966	6.5	1-12,2045-2034;15-21,2030-2024	13-14,2033-2031[AILt]	(((((((...((((((((((((&))))))))))))-..)))))))	AAGGGUUAAUGUCAAUCAAAGA&UUUUUGAUUGAU-UCAACUCUU	2	0.943587266821235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN637_c2_g1_2036_TPlot.pdf
TRINITY_DN6380_c0_g1:2201	si_a329	TRINITY_DN6380_c0_g1	2190	2210	2201	-29.60	-21.90	0.739864864864865	12	5-8,2206-2203;10-20,2201-2191	1-4,2210-2207[UP5];9-9,2202-2202[SIL];21-21,2190-2190[UP3]	.(((((((((((.((((....&....)))).))))))))))).	GGGGACAAGGAACGAGACGAC&AUUUUUUUAUUCCUUGUCCCG	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN6380_c0_g1_2201_TPlot.pdf
TRINITY_DN63812_c0_g1:165	si_a352	TRINITY_DN63812_c0_g1	153	174	165	-22.50	-14.90	0.662222222222222	12	6-12,169-163;13-21,161-153	1-5,174-170[UP5];x-x,162-162[BULt]	(((((((((.(((((((.....&.....)))))))-)))))))))	GAUCGAGAUGAGAAUUACUGAU&AAUAUUAAUUCU-AUUUUGAUC	4	0.999947062853178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN63812_c0_g1_165_TPlot.pdf
TRINITY_DN63833_c0_g1:129	si_s79	TRINITY_DN63833_c0_g1	115	138	129	-26.20	-18.60	0.709923664122137	13	2-12,137-127;13-20,123-116	1-1,138-138[UP5];x-x,126-124[BULt];21-21,115-115[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	UGGAAGAAGUAUGGGAAGAGGAGG&UUUUUUCUUUCC---UUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN63833_c0_g1_129_TPlot.pdf
TRINITY_DN63839_c0_g1:321	si_s73	TRINITY_DN63839_c0_g1	309	329	321	-24.00	-15.80	0.658333333333333	6.5	1-3,329-327;5-16,326-315;17-21,313-309	4-4,x-x[BULq];x-x,314-314[BULt]	(((((.((((((((((((-(((&))).))))))))))))-)))))	AAAGGAAGAGGAAAAAGA-GGA&UCUAUUUUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN63839_c0_g1_321_TPlot.pdf
TRINITY_DN63845_c0_g1:232	si_a460	TRINITY_DN63845_c0_g1	220	241	232	-21.60	-15.10	0.699074074074074	5.5	1-12,241-230;13-19,228-222	x-x,229-229[BULt];20-21,221-220[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	UAUAUAUAUAUAUAUAUAACGA&UUGUUAUAUAUA-AUAUGUAAU	1	0.0483191761500107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN63845_c0_g1_232_TPlot.pdf
TRINITY_DN6387_c0_g1:1172	si_a7	TRINITY_DN6387_c0_g1	1161	1181	1172	-29.10	-19.10	0.656357388316151	6.5	2-6,1180-1176;8-21,1174-1161	1-1,1181-1181[UP5];7-7,1175-1175[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	AGAUGGGUUUUCUUGUUAAUG&AAUUGAAGAGAAAGCCUAUUU	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN6387_c0_g1_1172_TPlot.pdf
TRINITY_DN6388_c0_g1:122	si_a74	TRINITY_DN6388_c0_g1	111	131	122	-22.20	-15.80	0.711711711711712	9.5	1-3,131-129;6-20,126-112	4-5,128-127[SIL];21-21,111-111[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	GGGUAAUGGGGAACGAAGUGA&UCAAAUUGUUUUUCAUUAUUA	3	0.999756459400394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN6388_c0_g1_122_TPlot.pdf
TRINITY_DN638_c0_g1:220	si_a636	TRINITY_DN638_c0_g1	208	229	220	-26.30	-18.60	0.707224334600761	7	2-15,228-215;16-17,213-212	1-1,229-229[UP5];x-x,214-214[BULt];18-21,211-208[UP3]	....((.((((((((((((((.&.))))))))))))))-))....	AAAAACGUCAAAAAGAUCGACU&UGUCGAUUUUUUUGA-GUAAUA	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN638_c0_g1_220_TPlot.pdf
TRINITY_DN638_c0_g1:226	si_a630	TRINITY_DN638_c0_g1	215	233	226	-25.80	-17.98	0.696899224806202	8.5	1-3,233-231;8-21,228-215	4-7,230-229[AILq]	((((((((((((((..--(((&)))....))))))))))))))	UCAAAAAGAUCGACUU--UAC&GUAUUAUGUCGAUUUUUUUGA	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN638_c0_g1_226_TPlot.pdf
TRINITY_DN63901_c0_g1:194	si_a482	TRINITY_DN63901_c0_g1	183	209	194	-26.70	-19.10	0.715355805243446	16	2-8,208-202;9-20,195-184	1-1,209-209[UP5];x-x,201-196[BULt];21-21,183-183[UP3]	.((((((((((((......(((((((.&.)))))))------)))))))))))).	UGACAUAUUCUGUCAAAAUGUAACAAA&AUUGUUAU------AUAGAAUAUGUCG	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN63901_c0_g1_194_TPlot.pdf
TRINITY_DN6390_c0_g1:207	si_s872	TRINITY_DN6390_c0_g1	196	216	207	-30.70	-23.60	0.768729641693811	8.5	2-16,215-201	1-1,216-216[UP5];17-21,200-196[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAUGCUGGUUCUGAGAUCGGA&ACCGGUCUUAGAACUAAAAAU	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN6390_c0_g1_207_TPlot.pdf
TRINITY_DN6391_c0_g1:4178	si_s431	TRINITY_DN6391_c0_g1	4167	4188	4178	-21.10	-14.02	0.664454976303318	9.5	2-9,4187-4180;13-21,4175-4167	1-1,4188-4188[UP5];10-12,4179-4176[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	AUAAUGUGUCAAGUAUUGUUAA&AUAACAAUA-AUUACAUAUUAU	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN6391_c0_g1_4178_TPlot.pdf
TRINITY_DN6391_c0_g3:1404	si_a358	TRINITY_DN6391_c0_g3	1393	1413	1404	-29.10	-20.30	0.697594501718213	6	2-11,1412-1403;13-21,1401-1393	1-1,1413-1413[UP5];12-12,1402-1402[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	UGGUUUGGUGGAAAUAGAAUA&AAUUCUAUUUUGAUCGGAUCA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN6391_c0_g3_1404_TPlot.pdf
TRINITY_DN6392_c1_g1:1444	si_s79	TRINITY_DN6392_c1_g1	1430	1453	1444	-26.20	-19.10	0.729007633587786	6	1-11,1453-1443;12-13,1441-1440;14-21,1437-1430	x-x,1442-1442[BULt];x-x,1439-1438[BULt]	((((((((..((.(((((((((((&)))))))))))-))--))))))))	AAGAAGAAGCAGAGAAAGAAGAGA&UUUUUUCUUUC-CU--UUCUUCUU	2	0.999999999947624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6392_c1_g1_1444_TPlot.pdf
TRINITY_DN6392_c2_g1:3433	si_a409	TRINITY_DN6392_c2_g1	3422	3442	3433	-19.50	-13.00	0.666666666666667	12	1-13,3442-3430	14-21,3429-3422[UP3]	........(((((((((((((&)))))))))))))........	CAAAAUCCAUAUGAGCAGGAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6392_c2_g1_3433_TPlot.pdf
TRINITY_DN6392_c2_g1:3688	si_s758	TRINITY_DN6392_c2_g1	3677	3697	3688	-23.50	-15.40	0.65531914893617	14.5	6-16,3692-3682	1-5,3697-3693[UP5];17-21,3681-3677[UP3]	.....(((((((((((.....&.....))))))))))).....	CGAUCGUCGUUGUUGUGGCCU&UUAAAACAACAACGAUUAAUU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN6392_c2_g1_3688_TPlot.pdf
TRINITY_DN6392_c2_g1:3766	si_a471	TRINITY_DN6392_c2_g1	3755	3775	3766	-21.10	-14.00	0.663507109004739	13	5-18,3771-3758	1-4,3775-3772[UP5];19-21,3757-3755[UP3]	...((((((((((((((....&....))))))))))))))...	CUCUAACGGUAGUUGCAGACG&AAUAUGUAAUUAUUGUUAUAU	2	0.999902439946276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6392_c2_g1_3766_TPlot.pdf
TRINITY_DN6392_c2_g1:5676	si_a677	TRINITY_DN6392_c2_g1	5665	5685	5676	-35.40	-25.10	0.709039548022599	7.5	1-9,5685-5677;12-20,5674-5666	10-11,5676-5675[SIL];21-21,5665-5665[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UGGGACUGCGGCGAUAAGGAA&UUCCUUAUUCACGCGGUUUCG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN6392_c2_g1_5676_TPlot.pdf
TRINITY_DN6392_c2_g1:5678	si_a675	TRINITY_DN6392_c2_g1	5667	5687	5678	-34.00	-22.30	0.655882352941176	8.5	3-11,5685-5677;14-21,5674-5667	1-2,5687-5686[UP5];12-13,5676-5675[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	GGACUGCGGCGAUAAGGAAGU&GAUUCCUUAUUCACGCGGUUU	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN6392_c2_g1_5678_TPlot.pdf
TRINITY_DN6392_c2_g1:5875	si_a677	TRINITY_DN6392_c2_g1	5863	5884	5875	-35.40	-26.30	0.742937853107345	6	2-13,5883-5872;14-18,5870-5866;20-21,5864-5863	1-1,5884-5884[UP5];x-x,5871-5871[BULt];19-19,5865-5865[SIL]	((.(((((.((((((((((((.&.))))))))))))-))))).))	UGCGACCGCCGUGGAUGAGGAG&UUCCUUAUUCACG-CGGUUUCG	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN6392_c2_g1_5875_TPlot.pdf
TRINITY_DN6392_c2_g1:5877	si_a675	TRINITY_DN6392_c2_g1	5865	5886	5877	-34.00	-26.00	0.764705882352941	9.5	4-15,5883-5872;16-20,5870-5866	1-3,5886-5884[UP5];x-x,5871-5871[BULt];21-21,5865-5865[UP3]	.(((((.((((((((((((...&...))))))))))))-))))).	CGACCGCCGUGGAUGAGGAGAG&GAUUCCUUAUUCACG-CGGUUU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN6392_c2_g1_5877_TPlot.pdf
TRINITY_DN6392_c2_g1:5879	si_a673	TRINITY_DN6392_c2_g1	5867	5888	5879	-34.80	-24.80	0.71264367816092	11.5	6-17,5883-5872;18-21,5870-5867	1-5,5888-5884[UP5];x-x,5871-5871[BULt]	((((.((((((((((((.....&.....))))))))))))-))))	ACCGCCGUGGAUGAGGAGAGGC&UUGAUUCCUUAUUCACG-CGGU	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a673_TRINITY_DN6392_c2_g1_5879_TPlot.pdf
TRINITY_DN6392_c2_g1:5880	si_a672	TRINITY_DN6392_c2_g1	5868	5889	5880	-34.10	-23.50	0.689149560117302	13.5	7-18,5883-5872;19-21,5870-5868	1-6,5889-5884[UP5];x-x,5871-5871[BULt]	(((.((((((((((((......&......))))))))))))-)))	CCGCCGUGGAUGAGGAGAGGCC&AUUGAUUCCUUAUUCACG-CGG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a672_TRINITY_DN6392_c2_g1_5880_TPlot.pdf
TRINITY_DN6392_c2_g1:5888	si_s808	TRINITY_DN6392_c2_g1	5877	5902	5888	-28.60	-19.42	0.679020979020979	16.5	1-9,5902-5894;11-20,5887-5878	10-10,5893-5888[AILt];21-21,5877-5877[UP3]	.((((((((((......(((((((((&)))))))))-----.)))))))))).	AUGAGGAGAGGCCGGCCGACGGAGAU&AUCUUCGUU-----ACCUUUUCUUAA	4	0.99999995260776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6392_c2_g1_5888_TPlot.pdf
TRINITY_DN6392_c2_g1:6078	si_s372	TRINITY_DN6392_c2_g1	6067	6087	6078	-45.70	-30.08	0.658205689277899	8	1-5,6087-6083;9-16,6079-6072;18-21,6070-6067	6-8,6082-6080[SIL];17-17,6071-6071[SIL]	((((.((((((((...(((((&)))))...)))))))).))))	GCGGUCACGCGAGAACUUGGU&ACCGAUCGCUCGCGUGUCCGC	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN6392_c2_g1_6078_TPlot.pdf
TRINITY_DN6392_c2_g1:6101	si_s399	TRINITY_DN6392_c2_g1	6090	6110	6101	-33.50	-21.84	0.651940298507463	5	1-12,6110-6099;18-21,6093-6090	13-17,6098-6094[SIL]	((((.....((((((((((((&)))))))))))).....))))	CGUUGACCUUCUUCCUUGGAA&UUCCAAGGAAGACGAAAAACG	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s399_TRINITY_DN6392_c2_g1_6101_TPlot.pdf
TRINITY_DN6392_c2_g1:7367	si_a507	TRINITY_DN6392_c2_g1	7356	7376	7367	-34.90	-23.30	0.667621776504298	10	1-14,7376-7363	15-21,7362-7356[UP3]	.......((((((((((((((&)))))))))))))).......	UAGUUUGUCCAAGGGGGGCGA&UCGUCUUCCUUGGAAUGUAAG	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN6392_c2_g1_7367_TPlot.pdf
TRINITY_DN6392_c2_g1:7369	si_a505	TRINITY_DN6392_c2_g1	7358	7378	7369	-33.30	-23.50	0.705705705705706	11	3-16,7376-7363	1-2,7378-7377[UP5];17-21,7362-7358[UP3]	.....((((((((((((((..&..)))))))))))))).....	GUUUGUCCAAGGGGGGCGAUU&UUUCGUCUUCCUUGGAAUGUA	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN6392_c2_g1_7369_TPlot.pdf
TRINITY_DN6393_c0_g1:18	si_s438	TRINITY_DN6393_c0_g1	7	27	18	-21.20	-14.10	0.665094339622642	10	1-3,27-25;6-18,22-10;21-21,7-7	4-5,24-23[SIL];19-20,9-8[SIL]	(..(((((((((((((..(((&)))..)))))))))))))..)	GGAGUGUGUGGUAUGUUUUUG&UAAUUACAUAUUAUAUAUAAC	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN6393_c0_g1_18_TPlot.pdf
TRINITY_DN6393_c0_g1:20	si_s436	TRINITY_DN6393_c0_g1	9	29	20	-19.60	-15.20	0.775510204081633	9.5	2-5,28-25;8-20,22-10	1-1,29-29[UP5];6-7,24-23[SIL];21-21,9-9[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AGUGUGUGGUAUGUUUUUGUA&AAUAAUUACAUAUUAUAUAUA	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN6393_c0_g1_20_TPlot.pdf
TRINITY_DN6394_c0_g1:2038	si_a313	TRINITY_DN6394_c0_g1	2027	2047	2038	-28.70	-18.80	0.655052264808362	6	1-8,2047-2040;10-20,2038-2028	9-9,2039-2039[SIL];21-21,2027-2027[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	UAAAUUGUGGGUUAAUUCAAG&CUUGGAUUUAUCCAUGAUUUU	2	0.999616421422456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN6394_c0_g1_2038_TPlot.pdf
TRINITY_DN6395_c0_g1:887	si_s439	TRINITY_DN6395_c0_g1	873	896	887	-21.50	-17.20	0.8	7	2-10,895-887;11-21,883-873	1-1,896-896[UP5];x-x,886-884[BULt]	(((((((((((...(((((((((.&.)))))))))---)))))))))))	UGUUAUAUAUACAUAUAUGUAAUA&AAUUACAUAU---UAUAUAUAACA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN6395_c0_g1_887_TPlot.pdf
TRINITY_DN6396_c1_g1:13	si_s66	TRINITY_DN6396_c1_g1	2	22	13	-26.30	-18.60	0.707224334600761	7.5	2-15,21-8	1-1,22-22[UP5];16-21,7-2[UP3]	......((((((((((((((.&.))))))))))))))......	UAGUUUAGAAUAGAAGUUGCG&AGCAACUUCUAUUUUUUUUCU	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN6396_c1_g1_13_TPlot.pdf
TRINITY_DN6396_c1_g1:15	si_s64	TRINITY_DN6396_c1_g1	4	24	15	-24.10	-18.60	0.771784232365145	9.5	4-17,21-8	1-3,24-22[UP5];18-21,7-4[UP3]	....((((((((((((((...&...))))))))))))))....	GUUUAGAAUAGAAGUUGCGGA&UUAGCAACUUCUAUUUUUUUU	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6396_c1_g1_15_TPlot.pdf
TRINITY_DN6396_c1_g1:16	si_s63	TRINITY_DN6396_c1_g1	5	25	16	-25.80	-20.30	0.786821705426357	6.5	1-3,25-23;5-18,21-8	4-4,22-22[SIL];19-21,7-5[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UUUAGAAUAGAAGUUGCGGAC&GUUAGCAACUUCUAUUUUUUU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN6396_c1_g1_16_TPlot.pdf
TRINITY_DN6396_c1_g1:17	si_s62	TRINITY_DN6396_c1_g1	6	26	17	-26.50	-20.50	0.773584905660377	6.5	2-4,25-23;6-19,21-8	1-1,26-26[UP5];5-5,22-22[SIL];20-21,7-6[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	UUAGAAUAGAAGUUGCGGACC&AGUUAGCAACUUCUAUUUUUU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN6396_c1_g1_17_TPlot.pdf
TRINITY_DN6396_c1_g1:18	si_s61	TRINITY_DN6396_c1_g1	7	27	18	-26.50	-20.50	0.773584905660377	7.5	3-5,25-23;7-20,21-8	1-2,27-26[UP5];6-6,22-22[SIL];21-21,7-7[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	UAGAAUAGAAGUUGCGGACCC&AAGUUAGCAACUUCUAUUUUU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN6396_c1_g1_18_TPlot.pdf
TRINITY_DN6396_c1_g1:20	si_s59	TRINITY_DN6396_c1_g1	9	29	20	-29.20	-19.90	0.681506849315068	10.5	5-7,25-23;9-21,21-9	1-4,29-26[UP5];8-8,22-22[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GAAUAGAAGUUGCGGACCCGG&UCAAGUUAGCAACUUCUAUUU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN6396_c1_g1_20_TPlot.pdf
TRINITY_DN6396_c1_g1:212	si_a496	TRINITY_DN6396_c1_g1	201	225	212	-32.40	-23.26	0.717901234567901	14.5	1-7,225-219;10-21,212-201	8-9,218-213[AILt]	((((((((((((......(((((((&)))))))----..))))))))))))	AGGGGGGCGAAAUAGGAUCGACGUA&UAUGUCG----UUUUUCGUCUUCCU	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN6396_c1_g1_212_TPlot.pdf
TRINITY_DN6396_c1_g1:213	si_a495	TRINITY_DN6396_c1_g1	202	226	213	-31.90	-22.16	0.694670846394984	15.5	2-8,225-219;11-21,212-202	1-1,226-226[UP5];9-10,218-213[AILt]	(((((((((((......(((((((.&.)))))))----..)))))))))))	GGGGGGCGAAAUAGGAUCGACGUAC&AUAUGUCG----UUUUUCGUCUUCC	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN6396_c1_g1_213_TPlot.pdf
TRINITY_DN6397_c0_g1:3254	si_a410	TRINITY_DN6397_c0_g1	3243	3263	3254	-17.80	-11.80	0.662921348314607	9.5	3-18,3261-3246	1-2,3263-3262[UP5];19-21,3245-3243[UP3]	...((((((((((((((((..&..))))))))))))))))...	UCAAUUUAGAUAUAGAUGACA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6397_c0_g1_3254_TPlot.pdf
TRINITY_DN6397_c0_g1:3256	si_a408	TRINITY_DN6397_c0_g1	3245	3265	3256	-20.10	-14.30	0.711442786069652	6.5	1-3,3265-3263;5-20,3261-3246	4-4,3262-3262[SIL];21-21,3245-3245[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	AAUUUAGAUAUAGAUGACACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN6397_c0_g1_3256_TPlot.pdf
TRINITY_DN6397_c0_g1:6156	si_s41	TRINITY_DN6397_c0_g1	6145	6166	6156	-25.00	-16.50	0.66	9	1-8,6166-6159;10-19,6156-6147	9-9,6158-6157[AILt];20-21,6146-6145[UP3]	..((((((((((..((((((((&))))))))-.))))))))))..	UAGAGUCCAAUUUUUUGAGGAU&AUCUUUAA-UAAUUGGAUUUCA	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN6397_c0_g1_6156_TPlot.pdf
TRINITY_DN6397_c0_g1:6885	si_s3	TRINITY_DN6397_c0_g1	6874	6894	6885	-21.20	-14.50	0.683962264150943	10.5	5-13,6890-6882;15-21,6880-6874	1-4,6894-6891[UP5];14-14,6881-6881[SIL]	(((((((.(((((((((....&....))))))))).)))))))	AGUAGUAUUGAGUAAUGACAU&UUUAUAUUACUUAUUAUUACU	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN6397_c0_g1_6885_TPlot.pdf
TRINITY_DN6399_c0_g1:27	si_s818	TRINITY_DN6399_c0_g1	16	36	27	-23.70	-17.70	0.746835443037975	6	3-19,34-18	1-2,36-35[UP5];20-21,17-16[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GGUUUCAUUGUUAAGAAAAAU&CCUUUUCUUAAUAAUGAAAAA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN6399_c0_g1_27_TPlot.pdf
TRINITY_DN6399_c0_g1:689	si_a70	TRINITY_DN6399_c0_g1	678	697	689	-23.90	-15.80	0.661087866108787	7.5	2-7,696-691;10-19,689-680	1-1,697-697[UP5];8-9,690-690[AILq];20-21,679-678[UP3]	..((((((((((.-((((((.&.))))))..))))))))))..	CCUGAAAAGCAAG-UGAAAGC&UCUUUCAAAUUGUUUUUCAUU	2	0.999999923927425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6399_c0_g1_689_TPlot.pdf
TRINITY_DN6399_c0_g1:838	si_s613	TRINITY_DN6399_c0_g1	828	846	838	-29.20	-21.50	0.736301369863014	5	1-9,846-838;11-14,837-834;16-21,833-828	10-10,x-x[BULq];15-15,x-x[BULq]	((((((-((((-(((((((((&))))))))).)))).))))))	GAUCGC-UGGA-UUGAAAGAG&CUUUUUUAAAUCCAAGCGAUC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN6399_c0_g1_838_TPlot.pdf
TRINITY_DN63_c0_g1:1364	si_a17	TRINITY_DN63_c0_g1	1353	1378	1364	-24.30	-16.00	0.65843621399177	17	4-9,1375-1370;10-20,1364-1354	1-3,1378-1376[UP5];x-x,1369-1365[BULt];21-21,1353-1353[UP3]	.(((((((((((.....((((((...&...))))))-----))))))))))).	UGCUGAAAAUAAGAAGCAUAGGCCAG&AAAGCCUAU-----UUAUUUUUAGUU	4	0.999999996694479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN63_c0_g1_1364_TPlot.pdf
TRINITY_DN63_c0_g2:1727	si_a419	TRINITY_DN63_c0_g2	1716	1737	1727	-23.00	-16.80	0.730434782608696	5	1-4,1737-1734;5-8,1732-1729;10-21,1727-1716	x-x,1733-1733[BULt];9-9,1728-1728[SIL]	((((((((((((.((((.((((&))))-)))).))))))))))))	GAUCCUAUAUUUUUUUGCAAUA&UAUU-UAAAUAAAUAUAGGAUC	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN63_c0_g2_1727_TPlot.pdf
TRINITY_DN63_c0_g2:1728	si_a418	TRINITY_DN63_c0_g2	1717	1738	1728	-21.20	-14.80	0.69811320754717	5	1-5,1738-1734;6-9,1732-1729;11-21,1727-1717	x-x,1733-1733[BULt];10-10,1728-1728[SIL]	(((((((((((.((((.(((((&)))))-)))).)))))))))))	AUCCUAUAUUUUUUUGCAAUAU&AUAUU-UAAAUAAAUAUAGGAU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN63_c0_g2_1728_TPlot.pdf
TRINITY_DN6400_c0_g1:58	si_s298	TRINITY_DN6400_c0_g1	46	67	58	-30.80	-22.50	0.73051948051948	5	2-13,66-55;14-21,53-46	1-1,67-67[UP5];x-x,54-54[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	GAGUUUUUAGCAAUUCUAGUCA&CGAUUGGAAUUGC-GAAAAUUC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN6400_c0_g1_58_TPlot.pdf
TRINITY_DN6400_c0_g1:59	si_s297	TRINITY_DN6400_c0_g1	47	68	59	-29.80	-19.50	0.654362416107383	7	3-14,66-55;15-21,53-47	1-2,68-67[UP5];x-x,54-54[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	AGUUUUUAGCAAUUCUAGUCAU&UCGAUUGGAAUUGC-GAAAAUU	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN6400_c0_g1_59_TPlot.pdf
TRINITY_DN6403_c0_g1:1942	si_s631	TRINITY_DN6403_c0_g1	1930	1951	1942	-36.00	-24.50	0.680555555555556	6.5	2-3,1950-1949;5-10,1947-1942;12-18,1940-1934;19-21,1932-1930	1-1,1951-1951[UP5];4-4,1948-1948[SIL];11-11,1941-1941[SIL];x-x,1933-1933[BULt]	(((.(((((((.((((((.((.&.)).)))))).)))))))-)))	GGCAAAGCGCCAACGAAAUGAA&AUCUUUUCGUAGGCGUUU-GCC	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN6403_c0_g1_1942_TPlot.pdf
TRINITY_DN6403_c0_g1:2210	si_s631	TRINITY_DN6403_c0_g1	2198	2219	2210	-36.00	-24.50	0.680555555555556	6.5	2-3,2218-2217;5-10,2215-2210;12-17,2208-2203;18-21,2201-2198	1-1,2219-2219[UP5];4-4,2216-2216[SIL];11-11,2209-2209[SIL];x-x,2202-2202[BULt]	((((.((((((.((((((.((.&.)).)))))).))))))-))))	GGCACAGCGCCAACGAAAUGAA&AUCUUUUCGUAGGCGUU-UGCC	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN6403_c0_g1_2210_TPlot.pdf
TRINITY_DN6403_c0_g1:2521	si_s488	TRINITY_DN6403_c0_g1	2510	2530	2521	-18.30	-12.50	0.683060109289617	9	1-17,2530-2514	18-21,2513-2510[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAUAUUAUAUUUGGGUAGGUA&UAUUUAUUUAAAUAUAAACAA	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN6403_c0_g1_2521_TPlot.pdf
TRINITY_DN64054_c0_g1:44	si_s3	TRINITY_DN64054_c0_g1	31	53	44	-21.20	-14.68	0.692452830188679	11.5	2-12,52-42;15-21,37-31	1-1,53-53[UP5];13-14,41-38[AILt]	(((((((....(((((((((((.&.)))))))))))--..)))))))	AGUAAUGCUGGGAGUAGUGUGAU&UUUAUAUUACUU--AUUAUUACU	0	0.124604075995922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN64054_c0_g1_44_TPlot.pdf
TRINITY_DN6406_c0_g1:3282	si_s423	TRINITY_DN6406_c0_g1	3271	3291	3282	-21.50	-14.00	0.651162790697674	10	4-6,3288-3286;9-20,3283-3272	1-3,3291-3289[UP5];7-8,3285-3284[SIL];21-21,3271-3271[UP3]	.((((((((((((..(((...&...)))..)))))))))))).	CAAUUAUUGUUAUUGAGAGAU&UAUUCUAUAUAACAAUAAUUA	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN6406_c0_g1_3282_TPlot.pdf
TRINITY_DN6406_c0_g1:4051	si_s886	TRINITY_DN6406_c0_g1	4040	4060	4051	-26.50	-17.40	0.656603773584906	12.5	5-8,4056-4053;10-21,4051-4040	1-4,4060-4057[UP5];9-9,4052-4052[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAGAGGGUCUGUAUGUUACGA&UAAAAAUAAAUAGGCUUUCUC	2	0.951413723591217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN6406_c0_g1_4051_TPlot.pdf
TRINITY_DN6408_c3_g1:95	si_a879	TRINITY_DN6408_c3_g1	85	104	95	-27.40	-19.30	0.704379562043796	8	3-13,102-92;16-21,90-85	1-2,104-103[UP5];14-15,91-91[AILq]	((((((.-(((((((((((..&..)))))))))))..))))))	GCUAUGC-GAUUGCAGCUGCU&UUUAGUUGCAAUCAAUAUAGU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN6408_c3_g1_95_TPlot.pdf
TRINITY_DN64097_c0_g1:123	si_a641	TRINITY_DN64097_c0_g1	111	132	123	-23.60	-15.50	0.656779661016949	10	2-11,131-122;12-20,120-112	1-1,132-132[UP5];x-x,121-121[BULt];21-21,111-111[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AGAUGUGUUAGUUCGAGGAGAC&AUUUUUUUGAG-UAAUAUAUCG	4	0.999996071852019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN64097_c0_g1_123_TPlot.pdf
TRINITY_DN640_c0_g1:2570	si_s431	TRINITY_DN640_c0_g1	2559	2579	2570	-21.10	-14.10	0.66824644549763	12.5	5-17,2575-2563	1-4,2579-2576[UP5];18-21,2562-2559[UP3]	....(((((((((((((....&....)))))))))))))....	UGUUUGUGUAAUUGUUGGAAA&AUAACAAUAAUUACAUAUUAU	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN640_c0_g1_2570_TPlot.pdf
TRINITY_DN640_c0_g1:2571	si_s430	TRINITY_DN640_c0_g1	2560	2580	2571	-21.30	-14.10	0.661971830985915	13.5	6-18,2575-2563	1-5,2580-2576[UP5];19-21,2562-2560[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUUUGUGUAAUUGUUGGAAAA&UAUAACAAUAAUUACAUAUUA	2	0.97359694244819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN640_c0_g1_2571_TPlot.pdf
TRINITY_DN640_c0_g1:476	si_a359	TRINITY_DN640_c0_g1	466	485	476	-29.20	-19.30	0.660958904109589	8	2-8,484-478;10-12,476-474;14-19,473-468	1-1,485-485[UP5];9-9,477-477[SIL];13-13,x-x[BULq];20-21,467-466[UP3]	..((((((-(((.(((((((.&.))))))).))).))))))..	UGGAUCCG-UCAUGAUGGAAG&AUUCUAUUUUGAUCGGAUCAA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN640_c0_g1_476_TPlot.pdf
TRINITY_DN640_c0_g1:485	si_a74	TRINITY_DN640_c0_g1	474	494	485	-22.20	-15.60	0.702702702702703	9	4-19,491-476	1-3,494-492[UP5];20-21,475-474[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCAUGAUGGAAGACAAUUCUC&UCAAAUUGUUUUUCAUUAUUA	3	0.999946643592022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN640_c0_g1_485_TPlot.pdf
TRINITY_DN640_c0_g1:487	si_a72	TRINITY_DN640_c0_g1	476	496	487	-21.90	-15.60	0.712328767123288	11	6-21,491-476	1-5,496-492[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGAUGGAAGACAAUUCUCUA&UUUCAAAUUGUUUUUCAUUAU	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN640_c0_g1_487_TPlot.pdf
TRINITY_DN640_c0_g1:708	si_s74	TRINITY_DN640_c0_g1	697	717	708	-25.00	-16.50	0.66	11.5	4-19,714-699	1-3,717-715[UP5];20-21,698-697[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCAAGGAGAGAGAAAGGGCCA&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN640_c0_g1_708_TPlot.pdf
TRINITY_DN640_c0_g1:709	si_s73	TRINITY_DN640_c0_g1	698	720	709	-24.00	-16.60	0.691666666666667	11.5	1-3,720-718;5-20,714-699	4-4,717-715[AILt];21-21,698-698[UP3]	.((((((((((((((((...(((&)))--.)))))))))))))))).	CAAGGAGAGAGAAAGGGCCAAGA&UCU--AUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN640_c0_g1_709_TPlot.pdf
TRINITY_DN640_c0_g1:710	si_s72	TRINITY_DN640_c0_g1	699	721	710	-24.10	-16.80	0.697095435684647	11.5	2-4,720-718;6-21,714-699	1-1,721-721[UP5];5-5,717-715[AILt]	((((((((((((((((...(((.&.)))--.))))))))))))))))	AAGGAGAGAGAAAGGGCCAAGAG&UUCU--AUUUUUUUUCUUUCCUU	2	0.999999999998922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN640_c0_g1_710_TPlot.pdf
TRINITY_DN640_c0_g1:711	si_s82	TRINITY_DN640_c0_g1	699	722	711	-28.90	-20.40	0.705882352941176	7.5	1-6,722-717;7-14,714-707;15-21,705-699	x-x,716-715[BULt];x-x,706-706[BULt]	(((((((.((((((((..((((((&))))))--))))))))-)))))))	AAGGAGAGAGAAAGGGCCAAGAGA&UUUCUU--UCCUUUCU-UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN640_c0_g1_711_TPlot.pdf
TRINITY_DN640_c0_g1:712	si_s81	TRINITY_DN640_c0_g1	700	723	712	-28.90	-20.30	0.70242214532872	7.5	1-7,723-717;8-15,714-707;16-21,705-700	x-x,716-715[BULt];x-x,706-706[BULt]	((((((.((((((((..(((((((&)))))))--))))))))-))))))	AGGAGAGAGAAAGGGCCAAGAGAA&UUUUCUU--UCCUUUCU-UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN640_c0_g1_712_TPlot.pdf
TRINITY_DN640_c0_g1:713	si_s80	TRINITY_DN640_c0_g1	701	724	713	-28.20	-19.20	0.680851063829787	8.5	2-8,723-717;9-16,714-707;17-21,705-701	1-1,724-724[UP5];x-x,716-715[BULt];x-x,706-706[BULt]	(((((.((((((((..(((((((.&.)))))))--))))))))-)))))	GGAGAGAGAAAGGGCCAAGAGAAU&UUUUUCUU--UCCUUUCU-UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN640_c0_g1_713_TPlot.pdf
TRINITY_DN640_c0_g1:931	si_a498	TRINITY_DN640_c0_g1	920	942	931	-33.50	-23.22	0.693134328358209	15.5	1-6,942-937;12-21,929-920	7-11,936-930[AILt]	((((((((((.......((((((&))))))--.....))))))))))	CAGGGAAGACAACUAUUGCGACA&UGUCGU--UUUUCGUCUUCCUUG	3	0.999998071001669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN640_c0_g1_931_TPlot.pdf
TRINITY_DN6411_c0_g1:818	si_a236	TRINITY_DN6411_c0_g1	806	827	818	-35.00	-23.10	0.66	6	1-9,827-819;11-12,817-816;14-18,814-810;19-21,808-806	10-10,818-818[SIL];13-13,815-815[SIL];x-x,809-809[BULt]	(((.(((((.((.(((((((((&))))))))).)).)))))-)))	GGGUGGAUCUGGCUGAUUAUAG&CUAUAAUCAAUUCGAUCC-CCC	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN6411_c0_g1_818_TPlot.pdf
TRINITY_DN6411_c0_g1:821	si_a233	TRINITY_DN6411_c0_g1	810	830	821	-28.90	-18.80	0.650519031141869	5	2-12,829-819;14-15,817-816;17-21,814-810	1-1,830-830[UP5];13-13,818-818[SIL];16-16,815-815[SIL]	(((((.((.(((((((((((.&.))))))))))).)).)))))	GGAUCUGGCUGAUUAUAGAGC&UUUCUAUAAUCAAUUCGAUCC	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN6411_c0_g1_821_TPlot.pdf
TRINITY_DN6411_c0_g1:90	si_s194	TRINITY_DN6411_c0_g1	79	99	90	-30.30	-20.20	0.666666666666667	9.5	2-6,98-94;8-13,92-87;16-20,84-80	1-1,99-99[UP5];7-7,93-93[SIL];14-15,86-85[SIL];21-21,79-79[UP3]	.(((((..((((((.(((((.&.))))).))))))..))))).	CGGUGCUCUCCGAAUUGGUCU&CGAUUAUUUUGGAAUGUACCA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN6411_c0_g1_90_TPlot.pdf
TRINITY_DN6411_c0_g1:905	si_a114	TRINITY_DN6411_c0_g1	894	914	905	-27.90	-18.40	0.659498207885305	14	6-15,909-900;18-21,897-894	1-5,914-910[UP5];16-17,899-898[SIL]	((((..((((((((((.....&.....))))))))))..))))	CUGUCCGACGGGCUCGGACAC&AAAUACGAGCUUGUUUUAUAG	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN6411_c0_g1_905_TPlot.pdf
TRINITY_DN6411_c0_g1:91	si_s193	TRINITY_DN6411_c0_g1	80	100	91	-30.40	-19.80	0.651315789473684	10.5	3-7,98-94;9-14,92-87;17-21,84-80	1-2,100-99[UP5];8-8,93-93[SIL];15-16,86-85[SIL]	(((((..((((((.(((((..&..))))).))))))..)))))	GGUGCUCUCCGAAUUGGUCUC&ACGAUUAUUUUGGAAUGUACC	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s193_TRINITY_DN6411_c0_g1_91_TPlot.pdf
TRINITY_DN6412_c0_g2:98	si_a571	TRINITY_DN6412_c0_g2	85	107	98	-31.20	-20.40	0.653846153846154	6	2-16,106-92;17-21,89-85	1-1,107-107[UP5];x-x,91-90[BULt]	(((((..(((((((((((((((.&.)))))))))))))))--)))))	GUUGCCUAAAUGUACGAUUUACC&CGUGAAUCGUAUGUUU--GUAAC	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a571_TRINITY_DN6412_c0_g2_98_TPlot.pdf
TRINITY_DN6413_c0_g1:1521	si_a410	TRINITY_DN6413_c0_g1	1510	1530	1521	-17.80	-12.00	0.674157303370786	6.5	1-10,1530-1521;12-18,1519-1513	11-11,1520-1520[SIL];19-21,1512-1510[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	UCCGUUUAAAAAUGAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999996209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6413_c0_g1_1521_TPlot.pdf
TRINITY_DN6413_c0_g1:1522	si_a409	TRINITY_DN6413_c0_g1	1511	1531	1522	-19.50	-13.30	0.682051282051282	6	1-11,1531-1521;13-19,1519-1513	12-12,1520-1520[SIL];20-21,1512-1511[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CCGUUUAAAAAUGAACAAAAU&GUUUUGUUUAUAUUUAAAUAA	4	0.999999998459931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6413_c0_g1_1522_TPlot.pdf
TRINITY_DN6413_c0_g2:1167	si_a26	TRINITY_DN6413_c0_g2	1156	1176	1167	-28.00	-18.30	0.653571428571429	6.5	1-15,1176-1162;17-19,1160-1158	16-16,1161-1161[SIL];20-21,1157-1156[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AAGUUAUAGAACUAGAGAUGA&UUAUUUUUAGUUCUAAGACCG	2	0.98249026681496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN6413_c0_g2_1167_TPlot.pdf
TRINITY_DN6413_c0_g2:1168	si_a25	TRINITY_DN6413_c0_g2	1157	1177	1168	-26.50	-19.20	0.724528301886792	5.5	1-16,1177-1162;18-20,1160-1158	17-17,1161-1161[SIL];21-21,1157-1157[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AGUUAUAGAACUAGAGAUGAA&UUUAUUUUUAGUUCUAAGACC	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN6413_c0_g2_1168_TPlot.pdf
TRINITY_DN6413_c0_g2:1171	si_a22	TRINITY_DN6413_c0_g2	1160	1180	1171	-23.50	-16.90	0.719148936170213	10	4-19,1177-1162	1-3,1180-1178[UP5];20-21,1161-1160[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAUAGAACUAGAGAUGAAAUU&CUAUUUAUUUUUAGUUCUAAG	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN6413_c0_g2_1171_TPlot.pdf
TRINITY_DN6413_c0_g2:1172	si_a21	TRINITY_DN6413_c0_g2	1161	1181	1172	-24.30	-16.90	0.695473251028807	11	5-20,1177-1162	1-4,1181-1178[UP5];21-21,1161-1161[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUAGAACUAGAGAUGAAAUUC&CCUAUUUAUUUUUAGUUCUAA	3	0.999195941952717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN6413_c0_g2_1172_TPlot.pdf
TRINITY_DN6413_c0_g2:1175	si_a18	TRINITY_DN6413_c0_g2	1164	1195	1175	-26.30	-18.10	0.688212927756654	27	3-7,1193-1189;8-21,1177-1164	1-2,1195-1194[UP5];x-x,1188-1178[BULt]	((((((((((((((...........(((((..&..)))))-----------))))))))))))))	GAACUAGAGAUGAAAUUCAAGAAGUUAGGCAA&AAGCCUA-----------UUUAUUUUUAGUUC	2	0.987642480539365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN6413_c0_g2_1175_TPlot.pdf
TRINITY_DN6413_c0_g2:1784	si_a64	TRINITY_DN6413_c0_g2	1773	1793	1784	-29.40	-22.00	0.748299319727891	8	1-15,1793-1779	16-21,1778-1773[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUUCUUUGAAAGAGGCGGG&CUCGCUUCUUUCAAAUUGUUU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN6413_c0_g2_1784_TPlot.pdf
TRINITY_DN6413_c0_g2:1786	si_a62	TRINITY_DN6413_c0_g2	1775	1795	1786	-32.20	-22.00	0.683229813664596	9	3-17,1793-1779	1-2,1795-1794[UP5];18-21,1778-1775[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUCUUUGAAAGAGGCGGGAU&GACUCGCUUCUUUCAAAUUGU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN6413_c0_g2_1786_TPlot.pdf
TRINITY_DN6413_c0_g2:1787	si_a61	TRINITY_DN6413_c0_g2	1776	1796	1787	-32.90	-22.00	0.668693009118541	10	4-18,1793-1779	1-3,1796-1794[UP5];19-21,1778-1776[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCUUUGAAAGAGGCGGGAUA&CGACUCGCUUCUUUCAAAUUG	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN6413_c0_g2_1787_TPlot.pdf
TRINITY_DN6413_c0_g2:1788	si_a60	TRINITY_DN6413_c0_g2	1777	1797	1788	-32.20	-22.00	0.683229813664596	11	5-19,1793-1779	1-4,1797-1794[UP5];20-21,1778-1777[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCUUUGAAAGAGGCGGGAUAU&UCGACUCGCUUCUUUCAAAUU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN6413_c0_g2_1788_TPlot.pdf
TRINITY_DN6413_c0_g2:683	si_a784	TRINITY_DN6413_c0_g2	672	692	683	-24.70	-17.90	0.724696356275304	9	1-8,692-685;10-18,683-675	9-9,684-684[SIL];19-21,674-672[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UUUGUGGAAGAAAAGAGGGGU&ACUCUUCUAUUUUUCUAUUUU	3	0.999993368199119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6413_c0_g2_683_TPlot.pdf
TRINITY_DN6413_c0_g2:684	si_a783	TRINITY_DN6413_c0_g2	673	693	684	-24.70	-18.20	0.736842105263158	8.5	2-9,692-685;11-19,683-675	1-1,693-693[UP5];10-10,684-684[SIL];20-21,674-673[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UUGUGGAAGAAAAGAGGGGUG&AACUCUUCUAUUUUUCUAUUU	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN6413_c0_g2_684_TPlot.pdf
TRINITY_DN6413_c0_g2:685	si_a782	TRINITY_DN6413_c0_g2	674	694	685	-26.40	-18.20	0.689393939393939	9.5	3-10,692-685;12-20,683-675	1-2,694-693[UP5];11-11,684-684[SIL];21-21,674-674[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UGUGGAAGAAAAGAGGGGUGU&CAACUCUUCUAUUUUUCUAUU	2	0.998987331601569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN6413_c0_g2_685_TPlot.pdf
TRINITY_DN6413_c0_g2:686	si_a781	TRINITY_DN6413_c0_g2	675	695	686	-27.40	-18.20	0.664233576642336	10.5	4-11,692-685;13-21,683-675	1-3,695-693[UP5];12-12,684-684[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GUGGAAGAAAAGAGGGGUGUG&UCAACUCUUCUAUUUUUCUAU	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN6413_c0_g2_686_TPlot.pdf
TRINITY_DN6414_c0_g1:1003	si_a80	TRINITY_DN6414_c0_g1	992	1011	1003	-22.10	-14.40	0.65158371040724	5.5	1-8,1011-1004;10-19,1003-994	9-9,x-x[BULq];20-21,993-992[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	UAUUUUUAAUGA-GAAAAACA&UGUUUUUCAUUAUUAAGAAAA	3	0.999999956221005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN6414_c0_g1_1003_TPlot.pdf
TRINITY_DN6414_c0_g1:1004	si_a79	TRINITY_DN6414_c0_g1	993	1012	1004	-22.20	-15.30	0.689189189189189	4.5	1-9,1012-1004;11-20,1003-994	10-10,x-x[BULq];21-21,993-993[UP3]	.((((((((((-(((((((((&))))))))).)))))))))).	AUUUUUAAUGA-GAAAAACAA&UUGUUUUUCAUUAUUAAGAAA	2	0.998935640275264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN6414_c0_g1_1004_TPlot.pdf
TRINITY_DN6415_c0_g1:494	si_s485	TRINITY_DN6415_c0_g1	484	503	494	-18.10	-12.90	0.712707182320442	8.5	1-11,503-493;13-18,492-487	12-12,x-x[BULq];19-21,486-484[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GACGUAUUU-GAUGAAUGUAG&CUAUAUUUAUUUAAAUAUAAA	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN6415_c0_g1_494_TPlot.pdf
TRINITY_DN6415_c0_g2:119	si_s711	TRINITY_DN6415_c0_g2	108	129	119	-32.10	-24.10	0.750778816199377	6	2-8,128-122;9-19,120-110	1-1,129-129[UP5];x-x,121-121[BULt];20-21,109-108[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	UAGUCUUUUCCUGCUUCACUAU&UUAGUGAA-CAGGGAAAGAUAU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s711_TRINITY_DN6415_c0_g2_119_TPlot.pdf
TRINITY_DN6416_c0_g1:124	si_a758	TRINITY_DN6416_c0_g1	113	136	124	-34.00	-22.30	0.655882352941176	16	1-6,136-131;10-19,124-115	7-9,130-125[AILt];20-21,114-113[UP3]	..((((((((((......((((((&))))))---...))))))))))..	ACGUCAAAGACCAACCUUGGGAGG&CCUCCU---UUGGGUUUUUGAUUG	4	0.999999983116437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6416_c0_g1_124_TPlot.pdf
TRINITY_DN6416_c0_g1:125	si_a757	TRINITY_DN6416_c0_g1	114	137	125	-33.10	-22.30	0.673716012084592	16	2-7,136-131;11-20,124-115	1-1,137-137[UP5];8-10,130-125[AILt];21-21,114-114[UP3]	.((((((((((......((((((.&.))))))---...)))))))))).	CGUCAAAGACCAACCUUGGGAGGA&ACCUCCU---UUGGGUUUUUGAUU	2	0.999910579936388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6416_c0_g1_125_TPlot.pdf
TRINITY_DN6416_c0_g1:41	si_s75	TRINITY_DN6416_c0_g1	29	51	41	-24.00	-16.30	0.679166666666667	9	1-6,51-46;7-15,44-36;16-20,34-30	x-x,45-45[BULt];x-x,35-35[BULt];21-21,29-29[UP3]	.(((((.(((((((((.((((((&))))))-)))))))))-))))).	CGAAAGAGAGAGGAAGCAGAGUG&UAUUUU-UUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6416_c0_g1_41_TPlot.pdf
TRINITY_DN6417_c0_g1:11926	si_s804	TRINITY_DN6417_c0_g1	11915	11935	11926	-27.90	-19.50	0.698924731182796	8.5	1-4,11935-11932;6-17,11930-11919	5-5,11931-11931[SIL];18-21,11918-11915[UP3]	....((((((((((((.((((&)))).))))))))))))....	UGGUGGGUAACGAAGAGGAGA&UUUUAUCUUCGUUACCUUUUC	2	0.998414895741201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6417_c0_g1_11926_TPlot.pdf
TRINITY_DN6417_c0_g1:1245	si_s802	TRINITY_DN6417_c0_g1	1234	1254	1245	-26.40	-18.40	0.696969696969697	10.5	3-6,1252-1249;8-18,1247-1237	1-2,1254-1253[UP5];7-7,1248-1248[SIL];19-21,1236-1234[UP3]	...(((((((((((.((((..&..)))).)))))))))))...	AGCGGUAGCGAAGACGAAGGA&UAUUUUAUCUUCGUUACCUUU	4	0.999980747715898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN6417_c0_g1_1245_TPlot.pdf
TRINITY_DN6417_c0_g1:1246	si_s801	TRINITY_DN6417_c0_g1	1235	1255	1246	-28.20	-18.40	0.652482269503546	11.5	4-7,1252-1249;9-19,1247-1237	1-3,1255-1253[UP5];8-8,1248-1248[SIL];20-21,1236-1235[UP3]	..(((((((((((.((((...&...)))).)))))))))))..	GCGGUAGCGAAGACGAAGGAG&GUAUUUUAUCUUCGUUACCUU	4	0.999999964502386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN6417_c0_g1_1246_TPlot.pdf
TRINITY_DN6417_c0_g1:4204	si_s806	TRINITY_DN6417_c0_g1	4194	4213	4204	-28.60	-20.90	0.730769230769231	9.5	2-10,4212-4204;13-21,4202-4194	1-1,4213-4213[UP5];11-12,4203-4203[AILq]	(((((((((.-(((((((((.&.)))))))))..)))))))))	AAGAGAAGGC-GCGGAGGUGG&UUAUCUUCGUUACCUUUUCUU	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6417_c0_g1_4204_TPlot.pdf
TRINITY_DN6417_c0_g1:4214	si_s64	TRINITY_DN6417_c0_g1	4203	4225	4214	-24.10	-16.10	0.66804979253112	12.5	1-6,4225-4220;7-18,4217-4206	x-x,4219-4218[BULt];19-21,4205-4203[UP3]	...((((((((((((..((((((&))))))--))))))))))))...	CGCGGAGGUGGAGGUGGUGCUGG&UUAGCA--ACUUCUAUUUUUUUU	4	0.999999999880904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6417_c0_g1_4214_TPlot.pdf
TRINITY_DN6417_c0_g1:4231	si_a333	TRINITY_DN6417_c0_g1	4220	4241	4231	-30.60	-19.90	0.650326797385621	12	2-8,4240-4234;9-16,4232-4225;18-18,4223-4223	1-1,4241-4241[UP5];x-x,4233-4233[BULt];17-17,4224-4224[SIL];19-21,4222-4220[UP3]	...(.((((((((.(((((((.&.)))))))-)))))))).)...	UGCUGGGGACGAGAGAGUGGGC&UUUUAUUC-CUUGUCCCGAAAA	2	0.999835451332914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN6417_c0_g1_4231_TPlot.pdf
TRINITY_DN6417_c0_g2:1539	si_a758	TRINITY_DN6417_c0_g2	1528	1548	1539	-34.00	-24.10	0.708823529411765	8.5	1-8,1548-1541;10-18,1539-1531	9-9,1540-1540[SIL];19-21,1530-1528[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GUCUCGAGGAUCGGAAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6417_c0_g2_1539_TPlot.pdf
TRINITY_DN6417_c0_g2:1542	si_a755	TRINITY_DN6417_c0_g2	1531	1551	1542	-34.90	-25.70	0.736389684813754	8	3-11,1549-1541;13-21,1539-1531	1-2,1551-1550[UP5];12-12,1540-1540[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	UCGAGGAUCGGAAGGAGGUCG&GAACCUCCUUUGGGUUUUUGA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN6417_c0_g2_1542_TPlot.pdf
TRINITY_DN6418_c0_g1:1559	si_s63	TRINITY_DN6418_c0_g1	1548	1568	1559	-25.80	-21.20	0.821705426356589	5.5	1-9,1568-1560;11-21,1558-1548	10-10,1559-1559[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	GAAAAGGUGGACGUUGCUGAU&GUUAGCAACUUCUAUUUUUUU	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN6418_c0_g1_1559_TPlot.pdf
TRINITY_DN641_c0_g1:1485	si_s73	TRINITY_DN641_c0_g1	1474	1494	1485	-24.00	-18.40	0.766666666666667	10.5	5-21,1490-1474	1-4,1494-1491[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGGAGAGAGAAGAAGGCAA&UCUAUUUUUUUUCUUUCCUUU	4	0.999998448438401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN641_c0_g1_1485_TPlot.pdf
TRINITY_DN641_c0_g1:1781	si_a163	TRINITY_DN641_c0_g1	1770	1790	1781	-37.60	-25.48	0.677659574468085	11	1-8,1790-1783;12-19,1779-1772	9-11,1782-1780[SIL];20-21,1771-1770[UP3]	..((((((((...((((((((&))))))))...))))))))..	AAACGGGUGGUAUGGUUGGCC&GGUCAAUCUAUUCACCCGUCU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a163_TRINITY_DN641_c0_g1_1781_TPlot.pdf
TRINITY_DN641_c0_g1:1782	si_a162	TRINITY_DN641_c0_g1	1771	1791	1782	-37.60	-26.58	0.706914893617021	9.5	1-9,1791-1783;13-20,1779-1772	10-12,1782-1780[SIL];21-21,1771-1771[UP3]	.((((((((...(((((((((&)))))))))...)))))))).	AACGGGUGGUAUGGUUGGCCU&AGGUCAAUCUAUUCACCCGUC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a162_TRINITY_DN641_c0_g1_1782_TPlot.pdf
TRINITY_DN641_c0_g1:1784	si_a160	TRINITY_DN641_c0_g1	1773	1793	1784	-35.20	-26.18	0.74375	7.5	2-11,1792-1783;15-21,1779-1773	1-1,1793-1793[UP5];12-14,1782-1780[SIL]	(((((((...((((((((((.&.))))))))))...)))))))	CGGGUGGUAUGGUUGGCCUUC&UAAGGUCAAUCUAUUCACCCG	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a160_TRINITY_DN641_c0_g1_1784_TPlot.pdf
TRINITY_DN6422_c0_g1:107	si_a276	TRINITY_DN6422_c0_g1	96	116	107	-37.90	-25.20	0.66490765171504	6	1-6,116-111;8-9,109-108;11-21,106-96	7-7,110-110[SIL];10-10,107-107[SIL]	(((((((((((.((.((((((&)))))).)).)))))))))))	CCAAGCGGUUUAUUAGUAGGU&GCCUACGAAAAGAUCGCUUGG	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN6422_c0_g1_107_TPlot.pdf
TRINITY_DN6422_c0_g1:368	si_a80	TRINITY_DN6422_c0_g1	357	378	368	-22.10	-14.40	0.65158371040724	11	2-4,377-375;5-17,373-361	1-1,378-378[UP5];x-x,374-374[BULt];18-21,360-357[UP3]	....(((((((((((((.(((.&.)))-)))))))))))))....	CACGCUUGGUGAUGAGAGGACU&UGUU-UUUCAUUAUUAAGAAAA	3	0.999999974655294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN6422_c0_g1_368_TPlot.pdf
TRINITY_DN64252_c0_g1:31	si_s99	TRINITY_DN64252_c0_g1	17	41	31	-34.60	-24.30	0.702312138728324	8	1-4,41-38;5-13,36-28;14-18,24-20	x-x,37-37[BULt];x-x,27-25[BULt];19-21,19-17[UP3]	...(((((...(((((((((.((((&))))-)))))))))---)))))...	UGGUCCAAGACUCCGAAGCGUAAGA&UCUU-CGCUUCGGA---UUGGAAAA	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN64252_c0_g1_31_TPlot.pdf
TRINITY_DN64252_c0_g1:33	si_s97	TRINITY_DN64252_c0_g1	19	43	33	-36.30	-25.40	0.699724517906336	7	2-6,42-38;7-15,36-28;16-20,24-20	1-1,43-43[UP5];x-x,37-37[BULt];x-x,27-25[BULt];21-21,19-19[UP3]	.(((((...(((((((((.(((((.&.)))))-)))))))))---))))).	GUCCAAGACUCCGAAGCGUAAGAAA&CUUCUU-CGCUUCGGA---UUGGAA	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN64252_c0_g1_33_TPlot.pdf
TRINITY_DN64252_c0_g1:425	si_s76	TRINITY_DN64252_c0_g1	414	435	425	-23.60	-17.80	0.754237288135593	9.5	1-6,435-430;9-21,426-414	7-8,429-427[AILt]	(((((((((((((...((((((&))))))-..)))))))))))))	GGGAAAGGGAAGAUGCGAAGAU&AUUUUU-UUUCUUUCCUUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN64252_c0_g1_425_TPlot.pdf
TRINITY_DN6427_c0_g1:1022	si_a829	TRINITY_DN6427_c0_g1	1011	1031	1022	-25.70	-17.48	0.680155642023346	5	1-11,1031-1021;15-21,1017-1011	12-14,1020-1018[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	CUUCUAUCUGUUUUCUUUUCU&AGGAAAGAAAAAAAAUAGAAG	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a829_TRINITY_DN6427_c0_g1_1022_TPlot.pdf
TRINITY_DN6427_c0_g1:1023	si_a828	TRINITY_DN6427_c0_g1	1012	1032	1023	-24.10	-15.98	0.663070539419087	4	1-12,1032-1021;16-21,1017-1012	13-15,1020-1018[SIL]	((((((...((((((((((((&))))))))))))...))))))	UUCUAUCUGUUUUCUUUUCUU&AAGGAAAGAAAAAAAAUAGAA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN6427_c0_g1_1023_TPlot.pdf
TRINITY_DN6427_c0_g1:1024	si_a827	TRINITY_DN6427_c0_g1	1013	1033	1024	-24.00	-16.28	0.678333333333333	4	1-13,1033-1021;17-21,1017-1013	14-16,1020-1018[SIL]	(((((...(((((((((((((&)))))))))))))...)))))	UCUAUCUGUUUUCUUUUCUUU&AAAGGAAAGAAAAAAAAUAGA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a827_TRINITY_DN6427_c0_g1_1024_TPlot.pdf
TRINITY_DN6427_c0_g1:883	si_a692	TRINITY_DN6427_c0_g1	871	892	883	-34.50	-23.00	0.666666666666667	6.5	1-13,892-880;14-16,878-876;18-18,874-874	x-x,879-879[BULt];17-17,875-875[SIL];19-21,873-871[UP3]	...(.(((.(((((((((((((&)))))))))))))-))).)...	AAGGGCAGUUUGUGUUCGAGAC&GUUUCGAACACAA-CUGGUACA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a692_TRINITY_DN6427_c0_g1_883_TPlot.pdf
TRINITY_DN6427_c0_g1:884	si_a691	TRINITY_DN6427_c0_g1	872	893	884	-36.20	-26.50	0.732044198895028	5.5	1-14,893-880;15-17,878-876;19-19,874-874	x-x,879-879[BULt];18-18,875-875[SIL];20-21,873-872[UP3]	..(.(((.((((((((((((((&))))))))))))))-))).)..	AGGGCAGUUUGUGUUCGAGACC&GGUUUCGAACACAA-CUGGUAC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a691_TRINITY_DN6427_c0_g1_884_TPlot.pdf
TRINITY_DN6427_c0_g1:885	si_a690	TRINITY_DN6427_c0_g1	873	894	885	-35.90	-26.90	0.749303621169916	5.5	2-15,893-880;16-18,878-876;20-20,874-874	1-1,894-894[UP5];x-x,879-879[BULt];19-19,875-875[SIL];21-21,873-873[UP3]	.(.(((.((((((((((((((.&.))))))))))))))-))).).	GGGCAGUUUGUGUUCGAGACCU&CGGUUUCGAACACAA-CUGGUA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a690_TRINITY_DN6427_c0_g1_885_TPlot.pdf
TRINITY_DN6427_c0_g1:888	si_a687	TRINITY_DN6427_c0_g1	876	897	888	-37.10	-26.00	0.700808625336927	9	5-18,893-880;19-21,878-876	1-4,897-894[UP5];x-x,879-879[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	CAGUUUGUGUUCGAGACCUAUA&ACGCGGUUUCGAACACAA-CUG	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a687_TRINITY_DN6427_c0_g1_888_TPlot.pdf
TRINITY_DN642_c0_g2:560	si_a70	TRINITY_DN642_c0_g2	549	569	560	-23.90	-16.10	0.673640167364017	9.5	1-8,569-562;11-18,559-552	9-10,561-560[SIL];19-21,551-549[UP3]	...((((((((..((((((((&))))))))..))))))))...	AAAGAAGAACGCAUUGAGAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999997258724264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN642_c0_g2_560_TPlot.pdf
TRINITY_DN642_c0_g2:561	si_a69	TRINITY_DN642_c0_g2	550	570	561	-24.00	-17.00	0.708333333333333	8.5	1-9,570-562;12-19,559-552	10-11,561-560[SIL];20-21,551-550[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AAGAAGAACGCAUUGAGAGAA&UUCUUUCAAAUUGUUUUUCAU	2	0.999012228093801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN642_c0_g2_561_TPlot.pdf
TRINITY_DN642_c0_g2:562	si_a68	TRINITY_DN642_c0_g2	551	571	562	-25.40	-19.50	0.767716535433071	7	1-10,571-562;13-20,559-552	11-12,561-560[SIL];21-21,551-551[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AGAAGAACGCAUUGAGAGAAG&CUUCUUUCAAAUUGUUUUUCA	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN642_c0_g2_562_TPlot.pdf
TRINITY_DN642_c0_g2:563	si_a67	TRINITY_DN642_c0_g2	552	572	563	-27.20	-21.10	0.775735294117647	5.5	1-11,572-562;14-21,559-552	12-13,561-560[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	GAAGAACGCAUUGAGAGAAGU&GCUUCUUUCAAAUUGUUUUUC	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN642_c0_g2_563_TPlot.pdf
TRINITY_DN642_c0_g2:564	si_a66	TRINITY_DN642_c0_g2	553	573	564	-26.70	-17.90	0.670411985018727	6	2-12,572-562;15-21,559-553	1-1,573-573[UP5];13-14,561-560[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AAGAACGCAUUGAGAGAAGUA&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999979621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN642_c0_g2_564_TPlot.pdf
TRINITY_DN642_c0_g2:968	si_s69	TRINITY_DN642_c0_g2	957	983	968	-23.40	-16.70	0.713675213675214	18	3-9,981-975;10-21,968-957	1-2,983-982[UP5];x-x,974-969[BULt]	((((((((((((......(((((((..&..)))))))------))))))))))))	GAAAGAAAAGAAAGGUUGGUGGAAGAA&AACUUCUAU------UUUUUUUCUUUC	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN642_c0_g2_968_TPlot.pdf
TRINITY_DN642_c1_g2:1619	si_s859	TRINITY_DN642_c1_g2	1608	1630	1619	-42.50	-28.80	0.677647058823529	12	3-7,1628-1624;9-20,1620-1609	1-2,1630-1629[UP5];8-8,1623-1621[AILt];21-21,1608-1608[UP3]	.((((((((((((...(((((..&..)))))--.)))))))))))).	UGACUGGUGGGUCAUGGGGAGCA&GACUCCU--AGACCUACCGGUCU	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s859_TRINITY_DN642_c1_g2_1619_TPlot.pdf
TRINITY_DN642_c1_g2:1975	si_a763	TRINITY_DN642_c1_g2	1964	1984	1975	-28.80	-20.00	0.694444444444444	8.5	1-5,1984-1980;7-13,1978-1972;16-20,1969-1965	6-6,1979-1979[SIL];14-15,1971-1970[SIL];21-21,1964-1964[UP3]	.(((((..(((((((.(((((&))))).)))))))..))))).	CGAGUCUCUCAGGAAGCCAGA&UUUGGGUUUUUGAUUGAUUCA	2	0.995709762510726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN642_c1_g2_1975_TPlot.pdf
TRINITY_DN642_c1_g2:1976	si_a762	TRINITY_DN642_c1_g2	1965	1985	1976	-29.70	-19.80	0.666666666666667	8.5	2-6,1984-1980;8-14,1978-1972;17-21,1969-1965	1-1,1985-1985[UP5];7-7,1979-1979[SIL];15-16,1971-1970[SIL]	(((((..(((((((.(((((.&.))))).)))))))..)))))	GAGUCUCUCAGGAAGCCAGAA&CUUUGGGUUUUUGAUUGAUUC	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN642_c1_g2_1976_TPlot.pdf
TRINITY_DN642_c2_g1:735	si_s11	TRINITY_DN642_c2_g1	724	744	735	-23.60	-17.00	0.720338983050847	11	1-8,744-737;11-19,734-726	9-10,736-735[SIL];20-21,725-724[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UCCGGUGUGGUUUUAGUGGGU&ACUUAUUAUUACUAUAUUGAU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN642_c2_g1_735_TPlot.pdf
TRINITY_DN642_c2_g1:738	si_s8	TRINITY_DN642_c2_g1	727	747	738	-21.30	-15.50	0.727699530516432	11	3-11,745-737;14-21,734-727	1-2,747-746[UP5];12-13,736-735[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	GGUGUGGUUUUAGUGGGUAUA&AUUACUUAUUAUUACUAUAUU	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN642_c2_g1_738_TPlot.pdf
TRINITY_DN6433_c1_g1:70	si_a73	TRINITY_DN6433_c1_g1	59	79	70	-21.90	-15.00	0.684931506849315	11	1-15,79-65	16-21,64-59[UP3]	......(((((((((((((((&)))))))))))))))......	AUAUGGGAGGAGCGAUUUGGG&UUCAAAUUGUUUUUCAUUAUU	4	0.999999991096652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6433_c1_g1_70_TPlot.pdf
TRINITY_DN6433_c3_g1:183	si_s436	TRINITY_DN6433_c3_g1	172	192	183	-19.60	-14.90	0.760204081632653	8.5	2-5,191-188;8-20,185-173	1-1,192-192[UP5];6-7,187-186[SIL];21-21,172-172[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AAUAUGUGGUAUGUUUUUGUA&AAUAAUUACAUAUUAUAUAUA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN6433_c3_g1_183_TPlot.pdf
TRINITY_DN64366_c0_g1:54	si_s27	TRINITY_DN64366_c0_g1	43	63	54	-27.00	-17.90	0.662962962962963	7	1-7,63-57;9-18,55-46	8-8,56-56[SIL];19-21,45-43[UP3]	...((((((((((.(((((((&))))))).))))))))))...	AUUAGAUUUAGUUUCAGUCGA&UUGAUUGCAACUAAAUCUUUA	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN64366_c0_g1_54_TPlot.pdf
TRINITY_DN64366_c0_g1:55	si_s26	TRINITY_DN64366_c0_g1	44	64	55	-26.70	-18.90	0.707865168539326	6	1-8,64-57;10-19,55-46	9-9,56-56[SIL];20-21,45-44[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UUAGAUUUAGUUUCAGUCGAU&AUUGAUUGCAACUAAAUCUUU	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN64366_c0_g1_55_TPlot.pdf
TRINITY_DN64366_c0_g1:56	si_s25	TRINITY_DN64366_c0_g1	45	65	56	-27.10	-18.90	0.697416974169742	6	2-9,64-57;11-20,55-46	1-1,65-65[UP5];10-10,56-56[SIL];21-21,45-45[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	UAGAUUUAGUUUCAGUCGAUU&UAUUGAUUGCAACUAAAUCUU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN64366_c0_g1_56_TPlot.pdf
TRINITY_DN64366_c0_g1:57	si_s24	TRINITY_DN64366_c0_g1	46	66	57	-27.30	-18.90	0.692307692307692	7	3-10,64-57;12-21,55-46	1-2,66-65[UP5];11-11,56-56[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AGAUUUAGUUUCAGUCGAUUG&AUAUUGAUUGCAACUAAAUCU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s24_TRINITY_DN64366_c0_g1_57_TPlot.pdf
TRINITY_DN64366_c0_g1:58	si_s23	TRINITY_DN64366_c0_g1	47	67	58	-27.00	-17.80	0.659259259259259	9	4-11,64-57;13-21,55-47	1-3,67-65[UP5];12-12,56-56[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAUUUAGUUUCAGUCGAUUGU&UAUAUUGAUUGCAACUAAAUC	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN64366_c0_g1_58_TPlot.pdf
TRINITY_DN64367_c0_g1:92	si_a401	TRINITY_DN64367_c0_g1	81	101	92	-22.60	-15.40	0.68141592920354	11.5	5-19,97-83	1-4,101-98[UP5];20-21,82-81[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAUAAGCAGAACAGUUGGAA&AUAGAAUUGUUUUGUUUAUAU	4	0.999999929848069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN64367_c0_g1_92_TPlot.pdf
TRINITY_DN6436_c0_g2:577	si_s17	TRINITY_DN6436_c0_g2	566	587	577	-27.20	-18.60	0.683823529411765	11	2-8,586-580;11-21,576-566	1-1,587-587[UP5];9-10,579-577[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	GUUGCAGUUAGGAUUGGUGAUU&UAUUACUA-UAUUGAUUGCAAC	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN6436_c0_g2_577_TPlot.pdf
TRINITY_DN64373_c0_g1:359	si_a409	TRINITY_DN64373_c0_g1	348	368	359	-19.50	-14.90	0.764102564102564	10.5	1-15,368-354	16-21,353-348[UP3]	......(((((((((((((((&)))))))))))))))......	AGGUAAAGAUAUGGACAGAGC&GUUUUGUUUAUAUUUAAAUAA	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN64373_c0_g1_359_TPlot.pdf
TRINITY_DN64373_c0_g1:362	si_a406	TRINITY_DN64373_c0_g1	351	371	362	-19.80	-15.10	0.762626262626263	12.5	4-18,368-354	1-3,371-369[UP5];19-21,353-351[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAAAGAUAUGGACAGAGCUUU&AUUGUUUUGUUUAUAUUUAAA	4	0.999175696282049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN64373_c0_g1_362_TPlot.pdf
TRINITY_DN64373_c0_g1:365	si_a403	TRINITY_DN64373_c0_g1	354	376	365	-22.00	-15.80	0.718181818181818	11.5	2-5,375-372;7-21,368-354	1-1,376-376[UP5];6-6,371-369[AILt]	(((((((((((((((...((((.&.))))--.)))))))))))))))	AGAUAUGGACAGAGCUUUGUUCG&AGAAU--UGUUUUGUUUAUAUUU	4	0.99994814439953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN64373_c0_g1_365_TPlot.pdf
TRINITY_DN64397_c0_g1:150	si_s578	TRINITY_DN64397_c0_g1	139	160	150	-27.00	-20.40	0.755555555555556	4.5	2-9,159-152;10-21,150-139	1-1,160-160[UP5];x-x,151-151[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	GUUCAUGGUUUUCUUUAUUCCG&AGGAAUAAA-AAAAUCAUGGAU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s578_TRINITY_DN64397_c0_g1_150_TPlot.pdf
TRINITY_DN64397_c0_g1:154	si_s575	TRINITY_DN64397_c0_g1	142	164	154	-25.90	-17.60	0.67953667953668	6.5	1-3,164-162;5-12,159-152;13-21,150-142	4-4,161-160[AILt];x-x,151-151[BULt]	(((((((((.((((((((..(((&)))-.))))))))-)))))))))	CAUGGUUUUCUUUAUUCCGAUGU&ACA-AGGAAUAAA-AAAAUCAUG	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s575_TRINITY_DN64397_c0_g1_154_TPlot.pdf
TRINITY_DN6439_c0_g1:247	si_a726	TRINITY_DN6439_c0_g1	236	257	247	-39.00	-26.02	0.667179487179487	9	1-5,257-253;9-20,248-237	6-8,252-249[AILt];21-21,236-236[UP3]	.((((((((((((....(((((&)))))-...)))))))))))).	AGGUAAAGAUGCCGUCUGUAAC&GUUAC-UCGGGCAUCUUUACCC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a726_TRINITY_DN6439_c0_g1_247_TPlot.pdf
TRINITY_DN6439_c0_g1:248	si_a725	TRINITY_DN6439_c0_g1	237	258	248	-38.10	-26.32	0.690813648293963	9	2-6,257-253;10-21,248-237	1-1,258-258[UP5];7-9,252-249[AILt]	((((((((((((....(((((.&.)))))-...))))))))))))	GGUAAAGAUGCCGUCUGUAACC&CGUUAC-UCGGGCAUCUUUACC	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN6439_c0_g1_248_TPlot.pdf
TRINITY_DN6439_c0_g1:637	si_s313	TRINITY_DN6439_c0_g1	620	646	637	-30.80	-20.30	0.659090909090909	17.5	2-11,645-636;12-19,629-622	1-1,646-646[UP5];x-x,635-630[BULt];20-21,621-620[UP3]	..((((((((......((((((((((.&.))))))))))------))))))))..	AAGGCAGGAGAGAUUUGGACAGAAUUG&AAAUUCUGUCC------UUCUUGUUAC	3	0.999999861197202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN6439_c0_g1_637_TPlot.pdf
TRINITY_DN643_c0_g1:506	si_s79	TRINITY_DN643_c0_g1	496	516	506	-26.20	-19.20	0.732824427480916	4	1-9,516-508;10-17,506-499;19-21,498-496	x-x,507-507[BULt];18-18,x-x[BULq]	(((-((((((((.(((((((((&)))))))))-)))))))).)))	AAG-AGAAAGGAUAAGAAAGAA&UUUUUUCUU-UCCUUUCUUCUU	2	0.999999999391901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN643_c0_g1_506_TPlot.pdf
TRINITY_DN643_c0_g1:508	si_s78	TRINITY_DN643_c0_g1	496	517	508	-26.20	-19.80	0.755725190839695	5.5	1-10,517-508;11-19,506-498	x-x,507-507[BULt];20-21,497-496[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AAGAGAAAGGAUAAGAAAGAAA&UUUUUUUCUU-UCCUUUCUUCU	3	0.999999999945049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN643_c0_g1_508_TPlot.pdf
TRINITY_DN643_c0_g1:509	si_s77	TRINITY_DN643_c0_g1	497	518	509	-25.50	-20.70	0.811764705882353	4.5	1-11,518-508;12-20,506-498	x-x,507-507[BULt];21-21,497-497[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	AGAGAAAGGAUAAGAAAGAAAA&UUUUUUUUCUU-UCCUUUCUUC	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN643_c0_g1_509_TPlot.pdf
TRINITY_DN643_c0_g1:510	si_s76	TRINITY_DN643_c0_g1	498	519	510	-23.60	-20.50	0.86864406779661	4.5	2-12,518-508;13-21,506-498	1-1,519-519[UP5];x-x,507-507[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	GAGAAAGGAUAAGAAAGAAAAG&AUUUUUUUUCUU-UCCUUUCUU	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN643_c0_g1_510_TPlot.pdf
TRINITY_DN643_c0_g1:511	si_s75	TRINITY_DN643_c0_g1	499	520	511	-24.00	-19.40	0.808333333333333	5	3-13,518-508;14-21,506-499	1-2,520-519[UP5];x-x,507-507[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AGAAAGGAUAAGAAAGAAAAGA&UAUUUUUUUUCUU-UCCUUUCU	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN643_c0_g1_511_TPlot.pdf
TRINITY_DN643_c0_g1:512	si_s74	TRINITY_DN643_c0_g1	500	522	512	-25.00	-18.70	0.748	6	1-2,522-521;4-14,518-508;15-21,506-500	3-3,520-519[AILt];x-x,507-507[BULt]	(((((((.(((((((((((..((&))-.)))))))))))-)))))))	GAAAGGAUAAGAAAGAAAAGAAG&CU-AUUUUUUUUCUU-UCCUUUC	2	0.999693409243789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN643_c0_g1_512_TPlot.pdf
TRINITY_DN643_c0_g1:515	si_s71	TRINITY_DN643_c0_g1	503	522	515	-25.70	-17.00	0.66147859922179	6	1-5,522-518;8-17,517-508;18-21,506-503	6-7,x-x[BULq];x-x,507-507[BULt]	((((.((((((((((--(((((&)))))..))))))))))-))))	AGGAUAAGAAAGAAA--AGAAG&CUUCUAUUUUUUUUCUU-UCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN643_c0_g1_515_TPlot.pdf
TRINITY_DN643_c0_g1:886	si_a787	TRINITY_DN643_c0_g1	870	895	886	-26.30	-17.60	0.669201520912548	10.5	1-15,895-881;18-21,873-870	16-17,880-874[AILt]	((((.......(((((((((((((((&)))))))))))))))-----..))))	UGGGUCUAGACAUAGAAGAAUGGAGG&CUUCUAUUUUUCUAU-----UUUCCA	4	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN643_c0_g1_886_TPlot.pdf
TRINITY_DN6440_c0_g1:1602	si_s94	TRINITY_DN6440_c0_g1	1588	1611	1602	-35.50	-23.50	0.661971830985915	11	1-10,1611-1602;11-16,1597-1592;18-21,1591-1588	x-x,1601-1598[BULt];17-17,x-x[BULq]	((((-((((((....((((((((((&))))))))))----)))))).))))	CGAU-CGGAGCACAUGAAGAAGAGG&CUUCUUCUUC----GCUUCGGAUUG	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN6440_c0_g1_1602_TPlot.pdf
TRINITY_DN6440_c0_g1:1605	si_s91	TRINITY_DN6440_c0_g1	1590	1614	1605	-34.70	-23.60	0.680115273775216	9.5	2-13,1613-1602;14-19,1597-1592	1-1,1614-1614[UP5];x-x,1601-1598[BULt];20-21,1591-1590[UP3]	..((((((....((((((((((((.&.))))))))))))----))))))..	AUCGGAGCACAUGAAGAAGAGGAGC&UUUCUUCUUCUUC----GCUUCGGA	4	0.999999999840997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6440_c0_g1_1605_TPlot.pdf
TRINITY_DN6440_c0_g1:1621	si_a626	TRINITY_DN6440_c0_g1	1609	1631	1621	-30.20	-20.00	0.662251655629139	10	2-9,1630-1623;11-16,1620-1615;17-21,1613-1609	1-1,1631-1631[UP5];10-10,1622-1621[AILt];x-x,1614-1614[BULt]	(((((.((((((..((((((((.&.))))))))-.))))))-)))))	AGGAGCUUGACACGGAUGCGCCA&AGGCGUAUU-AUGUCGA-UUUUU	3	0.999902064420116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN6440_c0_g1_1621_TPlot.pdf
TRINITY_DN6440_c0_g1:1672	si_s84	TRINITY_DN6440_c0_g1	1661	1682	1672	-32.30	-26.20	0.811145510835913	8.5	1-8,1682-1675;9-20,1673-1662	x-x,1674-1674[BULt];21-21,1661-1661[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	GGAAGAGGAGGAGUGGGGAGGA&UCUUUCCU-UUCUUCUUCUUCG	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6440_c0_g1_1672_TPlot.pdf
TRINITY_DN6440_c0_g1:1676	si_s80	TRINITY_DN6440_c0_g1	1665	1685	1676	-28.20	-20.70	0.734042553191489	11.5	4-11,1682-1675;13-21,1673-1665	1-3,1685-1683[UP5];12-12,1674-1674[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAGGAGGAGUGGGGAGGACCA&UUUUUCUUUCCUUUCUUCUUC	3	0.999999999995712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6440_c0_g1_1676_TPlot.pdf
TRINITY_DN6440_c0_g1:2121	si_a633	TRINITY_DN6440_c0_g1	2110	2130	2121	-26.40	-18.10	0.685606060606061	8	1-17,2130-2114	18-21,2113-2110[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGGGCAAAGAGAUUGACAUGG&UUAUGUCGAUUUUUUUGAGUA	4	0.999998314889159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN6440_c0_g1_2121_TPlot.pdf
TRINITY_DN6440_c0_g1:2174	si_a773	TRINITY_DN6440_c0_g1	2163	2184	2174	-29.90	-20.20	0.675585284280936	10	4-8,2181-2177;9-20,2175-2164	1-3,2184-2182[UP5];x-x,2176-2176[BULt];21-21,2163-2163[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	UUGGAGGAGUUGAGGUCAACUU&UGAUUGAU-UCAACUCUUCUAU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a773_TRINITY_DN6440_c0_g1_2174_TPlot.pdf
TRINITY_DN6440_c0_g1:2177	si_a771	TRINITY_DN6440_c0_g1	2165	2191	2177	-29.40	-19.40	0.659863945578231	15	2-5,2190-2187;6-10,2181-2177;11-21,2175-2165	1-1,2191-2191[UP5];x-x,2186-2182[BULt];x-x,2176-2176[BULt]	(((((((((((.(((((.....((((.&.))))-----)))))-)))))))))))	GGAGGAGUUGAGGUCAACUUCUUCAAC&UUUGA-----UUGAU-UCAACUCUUCU	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN6440_c0_g1_2177_TPlot.pdf
TRINITY_DN6440_c0_g1:2207	si_s470	TRINITY_DN6440_c0_g1	2196	2216	2207	-33.70	-22.60	0.670623145400593	9	1-4,2216-2213;6-16,2211-2201	5-5,2212-2212[SIL];17-21,2200-2196[UP3]	.....(((((((((((.((((&)))).))))))))))).....	UCUUCGGAUUCGUUGGUUGUG&CAUAUCCAACGGAUCCUAUAU	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s470_TRINITY_DN6440_c0_g1_2207_TPlot.pdf
TRINITY_DN6440_c0_g1:2208	si_s469	TRINITY_DN6440_c0_g1	2197	2217	2208	-34.50	-24.00	0.695652173913043	7.5	1-5,2217-2213;7-17,2211-2201	6-6,2212-2212[SIL];18-21,2200-2197[UP3]	....(((((((((((.(((((&))))).)))))))))))....	CUUCGGAUUCGUUGGUUGUGA&UCAUAUCCAACGGAUCCUAUA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s469_TRINITY_DN6440_c0_g1_2208_TPlot.pdf
TRINITY_DN6440_c0_g1:2209	si_s468	TRINITY_DN6440_c0_g1	2198	2218	2209	-35.80	-24.20	0.675977653631285	7.5	2-6,2217-2213;8-18,2211-2201	1-1,2218-2218[UP5];7-7,2212-2212[SIL];19-21,2200-2198[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	UUCGGAUUCGUUGGUUGUGAU&CUCAUAUCCAACGGAUCCUAU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s468_TRINITY_DN6440_c0_g1_2209_TPlot.pdf
TRINITY_DN6440_c0_g1:2210	si_s467	TRINITY_DN6440_c0_g1	2199	2219	2210	-36.60	-24.20	0.66120218579235	8.5	3-7,2217-2213;9-19,2211-2201	1-2,2219-2218[UP5];8-8,2212-2212[SIL];20-21,2200-2199[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	UCGGAUUCGUUGGUUGUGAUC&UCUCAUAUCCAACGGAUCCUA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s467_TRINITY_DN6440_c0_g1_2210_TPlot.pdf
TRINITY_DN6440_c0_g1:2211	si_s466	TRINITY_DN6440_c0_g1	2200	2220	2211	-36.40	-24.20	0.664835164835165	9.5	4-8,2217-2213;10-20,2211-2201	1-3,2220-2218[UP5];9-9,2212-2212[SIL];21-21,2200-2200[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CGGAUUCGUUGGUUGUGAUCC&AUCUCAUAUCCAACGGAUCCU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s466_TRINITY_DN6440_c0_g1_2211_TPlot.pdf
TRINITY_DN6440_c0_g1:2212	si_s465	TRINITY_DN6440_c0_g1	2201	2221	2212	-36.10	-23.90	0.662049861495845	10.5	5-9,2217-2213;11-21,2211-2201	1-4,2221-2218[UP5];10-10,2212-2212[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GGAUUCGUUGGUUGUGAUCCC&UAUCUCAUAUCCAACGGAUCC	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s465_TRINITY_DN6440_c0_g1_2212_TPlot.pdf
TRINITY_DN6440_c0_g1:2305	si_s662	TRINITY_DN6440_c0_g1	2293	2314	2305	-35.40	-23.20	0.655367231638418	8	1-10,2314-2305;11-19,2303-2295	x-x,2304-2304[BULt];20-21,2294-2293[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	UCGAUCAGUUCAGAUCUUCUGA&UCGGGGGAUC-GAAUUGAUUAU	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s662_TRINITY_DN6440_c0_g1_2305_TPlot.pdf
TRINITY_DN6440_c0_g1:2306	si_s661	TRINITY_DN6440_c0_g1	2294	2315	2306	-35.40	-23.20	0.655367231638418	8	2-11,2314-2305;12-20,2303-2295	1-1,2315-2315[UP5];x-x,2304-2304[BULt];21-21,2294-2294[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	CGAUCAGUUCAGAUCUUCUGAG&AUCGGGGGAUC-GAAUUGAUUA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN6440_c0_g1_2306_TPlot.pdf
TRINITY_DN6440_c0_g1:2307	si_s660	TRINITY_DN6440_c0_g1	2295	2316	2307	-35.00	-23.00	0.657142857142857	9	3-12,2314-2305;13-21,2303-2295	1-2,2316-2315[UP5];x-x,2304-2304[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GAUCAGUUCAGAUCUUCUGAGG&AAUCGGGGGAUC-GAAUUGAUU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s660_TRINITY_DN6440_c0_g1_2307_TPlot.pdf
TRINITY_DN6440_c0_g1:2425	si_s381	TRINITY_DN6440_c0_g1	2414	2439	2425	-40.30	-28.10	0.69727047146402	16	1-7,2439-2433;8-17,2427-2418	x-x,2432-2428[BULt];18-21,2417-2414[UP3]	....((((((((((.....(((((((&)))))))-----))))))))))....	GCGCGUGGGGCGGAACCGACGCGCGA&UCGCGUG-----UCCGCCUUACAUUC	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s381_TRINITY_DN6440_c0_g1_2425_TPlot.pdf
TRINITY_DN6440_c0_g1:2426	si_s380	TRINITY_DN6440_c0_g1	2415	2440	2426	-40.00	-28.30	0.7075	16	2-8,2439-2433;9-18,2427-2418	1-1,2440-2440[UP5];x-x,2432-2428[BULt];19-21,2417-2415[UP3]	...((((((((((.....(((((((.&.)))))))-----))))))))))...	CGCGUGGGGCGGAACCGACGCGCGAU&CUCGCGUG-----UCCGCCUUACAUU	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN6440_c0_g1_2426_TPlot.pdf
TRINITY_DN6440_c0_g1:2427	si_s379	TRINITY_DN6440_c0_g1	2416	2441	2427	-42.50	-28.30	0.665882352941176	17	3-9,2439-2433;10-19,2427-2418	1-2,2441-2440[UP5];x-x,2432-2428[BULt];20-21,2417-2416[UP3]	..((((((((((.....(((((((..&..)))))))-----))))))))))..	GCGUGGGGCGGAACCGACGCGCGAUC&GCUCGCGUG-----UCCGCCUUACAU	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN6440_c0_g1_2427_TPlot.pdf
TRINITY_DN6440_c0_g1:2431	si_s375	TRINITY_DN6440_c0_g1	2420	2441	2431	-44.10	-28.90	0.655328798185941	8	1-6,2441-2436;8-9,2434-2433;10-11,2431-2430;14-21,2427-2420	7-7,2435-2435[SIL];x-x,2432-2432[BULt];12-13,2429-2428[SIL]	((((((((..((.((.((((((&)))))).))-))..))))))))	GGGGCGGAACCGACGCGCGAUC&GAUCGCUCG-CGUGUCCGCCUU	2	0.998895147471782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN6440_c0_g1_2431_TPlot.pdf
TRINITY_DN6440_c0_g1:2434	si_s377	TRINITY_DN6440_c0_g1	2418	2443	2434	-44.10	-29.50	0.668934240362812	15	2-3,2442-2441;5-11,2439-2433;12-21,2427-2418	1-1,2443-2443[UP5];4-4,2440-2440[SIL];x-x,2432-2428[BULt]	((((((((((.....(((((((.((.&.)).)))))))-----))))))))))	GUGGGGCGGAACCGACGCGCGAUCGU&UCGCUCGCGUG-----UCCGCCUUAC	2	0.939965125035659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN6440_c0_g1_2434_TPlot.pdf
TRINITY_DN6440_c0_g1:2453	si_a765	TRINITY_DN6440_c0_g1	2442	2462	2453	-30.50	-20.60	0.675409836065574	8	2-6,2461-2457;8-21,2455-2442	1-1,2462-2462[UP5];7-7,2456-2456[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GUUGGGUUGAUCAACGGCUCG&UGGGUUUUUGAUUGAUUCAAC	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN6440_c0_g1_2453_TPlot.pdf
TRINITY_DN6442_c1_g2:1629	si_a318	TRINITY_DN6442_c1_g2	1618	1638	1629	-22.50	-16.50	0.733333333333333	11.5	6-19,1633-1620	1-5,1638-1634[UP5];20-21,1619-1618[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACAAAAAGAUCAUGGAAAACA&AUUUAUCCAUGAUUUUUUUAU	4	0.999871397437328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN6442_c1_g2_1629_TPlot.pdf
TRINITY_DN6443_c0_g1:238	si_a601	TRINITY_DN6443_c0_g1	228	247	238	-30.00	-20.90	0.696666666666667	7	1-11,247-237;14-19,235-230	12-13,236-236[AILq];20-21,229-228[UP3]	..((((((.-(((((((((((&)))))))))))..))))))..	AUUUGGAAG-GCGAAGGUUCU&AGAAUUUUCGCAAUUCCAAUC	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN6443_c0_g1_238_TPlot.pdf
TRINITY_DN6443_c0_g1:239	si_a600	TRINITY_DN6443_c0_g1	229	248	239	-29.70	-21.00	0.707070707070707	6	2-12,247-237;15-20,235-230	1-1,248-248[UP5];13-14,236-236[AILq];21-21,229-229[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	UUUGGAAG-GCGAAGGUUCUC&CAGAAUUUUCGCAAUUCCAAU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN6443_c0_g1_239_TPlot.pdf
TRINITY_DN6445_c0_g1:1849	si_s72	TRINITY_DN6445_c0_g1	1838	1858	1849	-24.10	-16.20	0.672199170124481	9.5	1-5,1858-1854;8-15,1851-1844;17-20,1842-1839	6-7,1853-1852[SIL];16-16,1843-1843[SIL];21-21,1838-1838[UP3]	.((((.((((((((..(((((&)))))..)))))))).)))).	UGGGGUGGAGAAAAUUUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6445_c0_g1_1849_TPlot.pdf
TRINITY_DN6445_c0_g1:2057	si_a140	TRINITY_DN6445_c0_g1	2046	2065	2057	-25.20	-17.60	0.698412698412698	5.5	1-7,2065-2059;9-10,2058-2057;12-21,2055-2046	8-8,x-x[BULq];11-11,2056-2056[SIL]	((((((((((.((-(((((((&))))))).)).))))))))))	GAAACGAUAAGGA-UAAUUAC&GUAAUUAAUCGUUGUUGUUUU	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN6445_c0_g1_2057_TPlot.pdf
TRINITY_DN6445_c0_g1:2101	si_s67	TRINITY_DN6445_c0_g1	2090	2110	2101	-25.60	-17.70	0.69140625	8	1-7,2110-2104;10-19,2101-2092	8-9,2103-2102[SIL];20-21,2091-2090[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	CUGAGGAAAAAUUUAGGUUGC&GCAACUUCUAUUUUUUUUCUU	2	0.999925808258036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6445_c0_g1_2101_TPlot.pdf
TRINITY_DN6445_c0_g1:2102	si_s66	TRINITY_DN6445_c0_g1	2091	2111	2102	-26.30	-17.80	0.67680608365019	8	2-8,2110-2104;11-20,2101-2092	1-1,2111-2111[UP5];9-10,2103-2102[SIL];21-21,2091-2091[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	UGAGGAAAAAUUUAGGUUGCA&AGCAACUUCUAUUUUUUUUCU	4	0.999999634212687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN6445_c0_g1_2102_TPlot.pdf
TRINITY_DN6445_c0_g1:2103	si_s65	TRINITY_DN6445_c0_g1	2092	2112	2103	-26.00	-17.40	0.669230769230769	9	3-9,2110-2104;12-21,2101-2092	1-2,2112-2111[UP5];10-11,2103-2102[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	GAGGAAAAAUUUAGGUUGCAA&UAGCAACUUCUAUUUUUUUUC	2	0.999704645783439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN6445_c0_g1_2103_TPlot.pdf
TRINITY_DN6445_c0_g1:2188	si_s87	TRINITY_DN6445_c0_g1	2176	2201	2188	-32.90	-22.50	0.683890577507599	12.5	2-4,2200-2198;5-10,2193-2188;11-21,2186-2176	1-1,2201-2201[UP5];x-x,2197-2194[BULt];x-x,2187-2187[BULt]	(((((((((((.((((((....(((.&.)))----))))))-)))))))))))	AAGCGGAGAGGUAAGAAACCUCGGAU&UUCC----UUUCUU-CUUCUUCGCUU	2	0.999999999611507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6445_c0_g1_2188_TPlot.pdf
TRINITY_DN6445_c0_g1:2189	si_s86	TRINITY_DN6445_c0_g1	2177	2202	2189	-32.90	-21.70	0.659574468085106	14	3-5,2200-2198;6-11,2193-2188;12-21,2186-2177	1-2,2202-2201[UP5];x-x,2197-2194[BULt];x-x,2187-2187[BULt]	((((((((((.((((((....(((..&..)))----))))))-))))))))))	AGCGGAGAGGUAAGAAACCUCGGAUA&UUUCC----UUUCUU-CUUCUUCGCU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6445_c0_g1_2189_TPlot.pdf
TRINITY_DN6445_c0_g1:2530	si_a142	TRINITY_DN6445_c0_g1	2519	2539	2530	-23.50	-15.50	0.659574468085106	14	6-19,2534-2521	1-5,2539-2535[UP5];20-21,2520-2519[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAAAGACAGCAAUGGUCUUUA&AAUUAAUCGUUGUUGUUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6445_c0_g1_2530_TPlot.pdf
TRINITY_DN6445_c0_g1:2531	si_a141	TRINITY_DN6445_c0_g1	2520	2540	2531	-23.80	-15.50	0.651260504201681	15	7-20,2534-2521	1-6,2540-2535[UP5];21-21,2520-2520[UP3]	.((((((((((((((......&......)))))))))))))).	AAAGACAGCAAUGGUCUUUAG&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN6445_c0_g1_2531_TPlot.pdf
TRINITY_DN6445_c0_g1:2574	si_s574	TRINITY_DN6445_c0_g1	2563	2583	2574	-26.20	-17.40	0.66412213740458	6	1-4,2583-2580;6-21,2578-2563	5-5,2579-2579[SIL]	((((((((((((((((.((((&)))).))))))))))))))))	GUGAUUUUUUUGUUUUAUGUU&GACAAGGAAUAAAAAAAUCAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s574_TRINITY_DN6445_c0_g1_2574_TPlot.pdf
TRINITY_DN6448_c0_g1:1114	si_s211	TRINITY_DN6448_c0_g1	1103	1125	1114	-38.00	-24.90	0.655263157894737	13	3-9,1123-1117;10-14,1114-1110;17-21,1107-1103	1-2,1125-1124[UP5];x-x,1116-1115[BULt];15-16,1109-1108[SIL]	(((((..(((((..(((((((..&..)))))))--)))))..)))))	GCGGUGGCGAGCCCGCGGCUGCG&ACCAGUUGU--GUUCGAAACCGC	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s211_TRINITY_DN6448_c0_g1_1114_TPlot.pdf
TRINITY_DN6448_c0_g1:638	si_a797	TRINITY_DN6448_c0_g1	629	647	638	-34.10	-22.40	0.656891495601173	8	1-10,647-638;13-16,635-632;19-21,631-629	11-12,637-636[SIL];17-18,x-x[BULq]	(((--((((..((((((((((&))))))))))..))))..)))	CGC--CGGAGCGGAAGAUGGA&UCUAUUUUCCAAUCCGAAGCG	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a797_TRINITY_DN6448_c0_g1_638_TPlot.pdf
TRINITY_DN6449_c0_g1:508	si_a681	TRINITY_DN6449_c0_g1	495	517	508	-33.80	-23.20	0.686390532544379	10	2-12,516-506;13-20,503-496	1-1,517-517[UP5];x-x,505-504[BULt];21-21,495-495[UP3]	.((((((((..(((((((((((.&.)))))))))))--)))))))).	AGUUCGAGGAUCUGUGUGAGUAU&UUAUUCACGCGG--UUUCGAACA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN6449_c0_g1_508_TPlot.pdf
TRINITY_DN6449_c0_g1:509	si_a680	TRINITY_DN6449_c0_g1	496	518	509	-34.70	-22.70	0.654178674351585	9	3-13,516-506;14-21,503-496	1-2,518-517[UP5];x-x,505-504[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GUUCGAGGAUCUGUGUGAGUAUU&CUUAUUCACGCGG--UUUCGAAC	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a680_TRINITY_DN6449_c0_g1_509_TPlot.pdf
TRINITY_DN644_c0_g1:193	si_s711	TRINITY_DN644_c0_g1	181	202	193	-32.10	-21.60	0.672897196261682	5.5	1-12,202-191;13-20,189-182	x-x,190-190[BULt];21-21,181-181[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	UUAUUUUUCACCUGUUUAUUAA&UUAGUGAACAGG-GAAAGAUAU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s711_TRINITY_DN644_c0_g1_193_TPlot.pdf
TRINITY_DN644_c0_g1:378	si_a777	TRINITY_DN644_c0_g1	368	387	378	-27.00	-17.60	0.651851851851852	6	1-1,387-387;3-14,385-374;16-20,373-369	2-2,386-386[SIL];15-15,x-x[BULq];21-21,368-368[UP3]	.(((((-((((((((((((.(&).)))))))))))).))))).	UGGAAU-GAAGGGUUGAAUGA&UGAUUCAACUCUUCUAUUUUU	3	0.999997438956165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN644_c0_g1_378_TPlot.pdf
TRINITY_DN644_c0_g1:379	si_a776	TRINITY_DN644_c0_g1	369	388	379	-27.10	-18.50	0.682656826568266	5	1-2,388-387;4-15,385-374;17-21,373-369	3-3,386-386[SIL];16-16,x-x[BULq]	(((((-((((((((((((.((&)).)))))))))))).)))))	GGAAU-GAAGGGUUGAAUGAA&UUGAUUCAACUCUUCUAUUUU	3	0.995596496320795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN644_c0_g1_379_TPlot.pdf
TRINITY_DN644_c0_g1:380	si_a775	TRINITY_DN644_c0_g1	370	389	380	-27.20	-18.20	0.669117647058823	5.5	2-3,388-387;5-16,385-374;18-21,373-370	1-1,389-389[UP5];4-4,386-386[SIL];17-17,x-x[BULq]	((((-((((((((((((.((.&.)).)))))))))))).))))	GAAU-GAAGGGUUGAAUGAAA&AUUGAUUCAACUCUUCUAUUU	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN644_c0_g1_380_TPlot.pdf
TRINITY_DN64520_c0_g1:131	si_s84	TRINITY_DN64520_c0_g1	120	141	131	-32.30	-21.30	0.659442724458204	6	1-9,141-133;10-16,131-125;18-20,123-121	x-x,132-132[BULt];17-17,124-124[SIL];21-21,120-120[UP3]	.(((.(((((((.(((((((((&)))))))))-))))))).))).	AGAACAAGAAGAUAGGGAAGGA&UCUUUCCUU-UCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN64520_c0_g1_131_TPlot.pdf
TRINITY_DN64520_c0_g1:148	si_a497	TRINITY_DN64520_c0_g1	137	156	148	-32.00	-21.50	0.671875	6.5	1-3,156-154;5-11,153-147;13-21,145-137	4-4,x-x[BULq];12-12,146-146[SIL]	(((((((((.(((((((-(((&))).))))))).)))))))))	AAGGAAGGCAAAAAGCG-CGU&AUGUCGUUUUUCGUCUUCCUU	2	0.999999993843147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN64520_c0_g1_148_TPlot.pdf
TRINITY_DN6456_c0_g1:64	si_a760	TRINITY_DN6456_c0_g1	53	74	64	-31.10	-20.90	0.672025723472669	7.5	1-2,74-73;3-18,71-56;20-21,54-53	x-x,72-72[BULt];19-19,55-55[SIL]	((.((((((((((((((((.((&))-)))))))))))))))).))	GUGAAUCAGAGACUCAAGGUGG&UC-CUUUGGGUUUUUGAUUGAU	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN6456_c0_g1_64_TPlot.pdf
TRINITY_DN64570_c0_g1:204	si_a424	TRINITY_DN64570_c0_g1	193	213	204	-28.40	-19.10	0.672535211267606	14.5	8-21,206-193	1-7,213-207[UP5]	((((((((((((((.......&.......))))))))))))))	CAACGGGUCUUAUACAGAAGG&AAAUAAAUAUAGGAUCCGUUG	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN64570_c0_g1_204_TPlot.pdf
TRINITY_DN6459_c0_g1:1683	si_s315	TRINITY_DN6459_c0_g1	1672	1693	1683	-31.60	-21.20	0.670886075949367	8	1-5,1693-1689;6-9,1687-1684;11-19,1682-1674	x-x,1688-1688[BULt];10-10,1683-1683[SIL];20-21,1673-1672[UP3]	..(((((((((.((((.(((((&)))))-)))).)))))))))..	UGGUGACAGGAUGGAUGAGAAU&AUUCU-GUCCUUCUUGUUACAA	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN6459_c0_g1_1683_TPlot.pdf
TRINITY_DN645_c0_g1:191	si_s73	TRINITY_DN645_c0_g1	181	200	191	-24.00	-16.10	0.670833333333333	5.5	1-12,200-189;14-19,188-183	13-13,x-x[BULq];20-21,182-181[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	UUGGGAAA-AGAAGAAAUAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN645_c0_g1_191_TPlot.pdf
TRINITY_DN645_c0_g1:192	si_s72	TRINITY_DN645_c0_g1	182	201	192	-24.10	-16.30	0.676348547717842	5.5	2-13,200-189;15-20,188-183	1-1,201-201[UP5];14-14,x-x[BULq];21-21,182-182[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	UGGGAAA-AGAAGAAAUAGAU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN645_c0_g1_192_TPlot.pdf
TRINITY_DN645_c0_g1:194	si_a550	TRINITY_DN645_c0_g1	183	203	194	-30.90	-22.18	0.717799352750809	3.5	1-14,203-190;18-21,186-183	15-17,189-187[SIL]	((((...((((((((((((((&))))))))))))))...))))	GGGAAAAGAAGAAAUAGAUUG&CAAUCUAUUUCUUUAUCUCCC	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN645_c0_g1_194_TPlot.pdf
TRINITY_DN645_c0_g1:196	si_a548	TRINITY_DN645_c0_g1	183	205	196	-27.20	-18.30	0.672794117647059	7	3-16,203-190;18-21,186-183	1-2,205-204[UP5];17-17,189-187[AILt]	((((...((((((((((((((..&..))))))))))))))--.))))	GGGAAAAGAAGAAAUAGAUUGUA&UUCAAUCUAUUUCUUU--AUCUC	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN645_c0_g1_196_TPlot.pdf
TRINITY_DN645_c0_g1:200	si_a544	TRINITY_DN645_c0_g1	189	209	200	-28.90	-19.30	0.667820069204152	6.5	1-3,209-207;5-5,205-205;7-20,203-190	4-4,206-206[SIL];6-6,204-204[SIL];21-21,189-189[UP3]	.((((((((((((((.(.(((&))).).)))))))))))))).	AGAAGAAAUAGAUUGUAGUGA&UCGGUUCAAUCUAUUUCUUUA	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN645_c0_g1_200_TPlot.pdf
TRINITY_DN645_c0_g1:201	si_a543	TRINITY_DN645_c0_g1	190	210	201	-28.70	-19.80	0.689895470383275	5.5	1-4,210-207;6-6,205-205;8-21,203-190	5-5,206-206[SIL];7-7,204-204[SIL]	((((((((((((((.(.((((&)))).).))))))))))))))	GAAGAAAUAGAUUGUAGUGAU&AUCGGUUCAAUCUAUUUCUUU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN645_c0_g1_201_TPlot.pdf
TRINITY_DN645_c0_g1:203	si_a541	TRINITY_DN645_c0_g1	192	212	203	-32.20	-21.30	0.661490683229814	6	2-6,211-207;8-8,205-205;10-21,203-192	1-1,212-212[UP5];7-7,206-206[SIL];9-9,204-204[SIL]	((((((((((((.(.(((((.&.))))).).))))))))))))	AGAAAUAGAUUGUAGUGAUCC&CGAUCGGUUCAAUCUAUUUCU	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a541_TRINITY_DN645_c0_g1_203_TPlot.pdf
TRINITY_DN6461_c0_g1:221	si_a545	TRINITY_DN6461_c0_g1	211	231	221	-28.10	-18.90	0.672597864768683	6.5	1-5,231-227;6-11,225-220;13-20,219-212	x-x,226-226[BULt];12-12,x-x[BULq];21-21,211-211[UP3]	.((((((((-((((((.(((((&)))))-)))))).)))))))).	UUAAAGAAG-AGGUUGAAACCG&CGGUU-CAAUCUAUUUCUUUAU	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN6461_c0_g1_221_TPlot.pdf
TRINITY_DN6461_c0_g1:32	si_a73	TRINITY_DN6461_c0_g1	21	41	32	-21.90	-15.20	0.694063926940639	8	1-15,41-27	16-21,26-21[UP3]	......(((((((((((((((&)))))))))))))))......	AAAAAAGAAGAAUAAUUUGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999889524339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6461_c0_g1_32_TPlot.pdf
TRINITY_DN6461_c0_g1:329	si_a498	TRINITY_DN6461_c0_g1	318	338	329	-33.50	-21.90	0.653731343283582	7	2-2,337-337;4-4,335-335;6-18,333-321;20-21,319-318	1-1,338-338[UP5];3-3,336-336[SIL];5-5,334-334[SIL];19-19,320-320[SIL]	((.(((((((((((((.(.(.&.).).))))))))))))).))	CAUGGGGGACGAAAAAGGUCU&UGUCGUUUUUCGUCUUCCUUG	2	0.999999999669543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6461_c0_g1_329_TPlot.pdf
TRINITY_DN6461_c0_g1:851	si_s203	TRINITY_DN6461_c0_g1	840	860	851	-35.50	-24.20	0.68169014084507	6	3-17,858-844;19-20,842-841	1-2,860-859[UP5];18-18,843-843[SIL];21-21,840-840[UP3]	.((.(((((((((((((((..&..))))))))))))))).)).	CAAGACAACUGGUACAUUUAU&UGGAAUGUACCAGUUGUGUUC	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s203_TRINITY_DN6461_c0_g1_851_TPlot.pdf
TRINITY_DN6461_c0_g1:858	si_s196	TRINITY_DN6461_c0_g1	847	869	858	-29.30	-20.28	0.692150170648464	9	1-7,869-863;10-21,858-847	8-9,862-859[AILt]	((((((((((((....(((((((&)))))))--..))))))))))))	ACUGGUACAUUUAUGUAAAUAAU&AUUAUUU--UGGAAUGUACCAGU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN6461_c0_g1_858_TPlot.pdf
TRINITY_DN6462_c0_g1:2295	si_s899	TRINITY_DN6462_c0_g1	2284	2304	2295	-28.30	-23.20	0.819787985865724	6.5	1-3,2304-2302;5-20,2300-2285	4-4,2301-2301[SIL];21-21,2284-2284[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	UAUUGAAGUUGAGGGGGUAGC&GCUUUCUCUUCAAUUUCAAUU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN6462_c0_g1_2295_TPlot.pdf
TRINITY_DN6462_c0_g1:4513	si_a66	TRINITY_DN6462_c0_g1	4502	4524	4513	-26.70	-17.50	0.655430711610487	8.5	1-9,4524-4516;10-20,4513-4503	x-x,4515-4514[BULt];21-21,4502-4502[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	UAAAAUAAUUUGUCAGAGGAGUG&CGCUUCUUU--CAAAUUGUUUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN6462_c0_g1_4513_TPlot.pdf
TRINITY_DN6462_c0_g1:4553	si_a784	TRINITY_DN6462_c0_g1	4542	4563	4553	-24.70	-16.10	0.651821862348178	8.5	1-8,4563-4556;9-9,4554-4554;11-18,4552-4545	x-x,4555-4555[BULt];10-10,4553-4553[SIL];19-21,4544-4542[UP3]	...((((((((.(.((((((((&))))))))-).))))))))...	UAUAUAGAGAAUUAAGAGGAGU&ACUCUUCU-AUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6462_c0_g1_4553_TPlot.pdf
TRINITY_DN6462_c0_g1:751	si_a347	TRINITY_DN6462_c0_g1	740	760	751	-23.50	-15.30	0.651063829787234	8	1-10,760-751;12-17,749-744	11-11,750-750[SIL];18-21,743-740[UP3]	....((((((.((((((((((&)))))))))).))))))....	GUUCAGAAUUCGUAUUUUUGG&CCGAAAAUAUUAAUUCUAUUU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN6462_c0_g1_751_TPlot.pdf
TRINITY_DN6464_c0_g1:1621	si_s439	TRINITY_DN6464_c0_g1	1610	1631	1621	-21.50	-14.10	0.655813953488372	6	2-4,1630-1628;5-17,1626-1614;20-20,1611-1611	1-1,1631-1631[UP5];x-x,1627-1627[BULt];18-19,1613-1612[SIL];21-21,1610-1610[UP3]	.(..(((((((((((((.(((.&.)))-)))))))))))))..).	GGGGAUAUAUAAUAUGUCAAUG&AAUU-ACAUAUUAUAUAUAACA	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN6464_c0_g1_1621_TPlot.pdf
TRINITY_DN6464_c0_g1:365	si_a24	TRINITY_DN6464_c0_g1	354	374	365	-24.20	-16.40	0.677685950413223	11.5	6-19,369-356	1-5,374-370[UP5];20-21,355-354[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGCUUAGAGCUAAAAAAUUUG&AUUUAUUUUUAGUUCUAAGAC	4	0.999209034513807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN6464_c0_g1_365_TPlot.pdf
TRINITY_DN6464_c0_g1:435	si_s809	TRINITY_DN6464_c0_g1	425	444	435	-28.50	-19.00	0.666666666666667	4.5	2-15,443-430;17-21,429-425	1-1,444-444[UP5];16-16,x-x[BULq]	(((((-((((((((((((((.&.)))))))))))))).)))))	GUUAA-AAAAGGUGAUGAAGU&UCUUCGUUACCUUUUCUUAAU	3	0.999999996912973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6464_c0_g1_435_TPlot.pdf
TRINITY_DN64697_c0_g1:339	si_s68	TRINITY_DN64697_c0_g1	328	348	339	-23.10	-15.20	0.658008658008658	12	6-21,343-328	1-5,348-344[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGGAAGAAGAUGGACGAAA&CAACUUCUAUUUUUUUUCUUU	0	0.778292062908476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN64697_c0_g1_339_TPlot.pdf
TRINITY_DN6470_c2_g2:1930	si_s444	TRINITY_DN6470_c2_g2	1919	1939	1930	-22.80	-14.90	0.653508771929825	8	1-3,1939-1937;5-6,1935-1934;8-19,1932-1921	4-4,1936-1936[SIL];7-7,1933-1933[SIL];20-21,1920-1919[UP3]	..((((((((((((.((.(((&))).)).))))))))))))..	ACUGUUGUUGUAUAAAAAGUG&CAUAUUAUAUAUAACAACAAU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN6470_c2_g2_1930_TPlot.pdf
TRINITY_DN6470_c2_g2:698	si_a549	TRINITY_DN6470_c2_g2	686	707	698	-29.50	-20.00	0.677966101694915	5	1-9,707-699;11-18,697-690;19-20,688-687	10-10,698-698[SIL];x-x,689-689[BULt];21-21,686-686[UP3]	.((.((((((((.(((((((((&))))))))).))))))))-)).	CGAUGAUGAAGAUAUAGAUUGG&UCAAUCUAUUUCUUUAUC-UCC	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN6470_c2_g2_698_TPlot.pdf
TRINITY_DN6471_c0_g1:3794	si_s367	TRINITY_DN6471_c0_g1	3783	3804	3794	-39.40	-26.00	0.65989847715736	5	1-5,3804-3800;6-12,3798-3792;14-15,3790-3789;17-21,3787-3783	x-x,3799-3799[BULt];13-13,3791-3791[SIL];16-16,3788-3788[SIL]	(((((.((.(((((((.(((((&)))))-))))))).)).)))))	CAUGCAGGGGAUCGGUGUCAAU&AUUGA-ACCGAUCGCUCGCGUG	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN6471_c0_g1_3794_TPlot.pdf
TRINITY_DN6471_c0_g1:4737	si_s621	TRINITY_DN6471_c0_g1	4726	4747	4737	-32.50	-22.60	0.695384615384615	10	3-8,4745-4740;9-18,4738-4729	1-2,4747-4746[UP5];x-x,4739-4739[BULt];19-21,4728-4726[UP3]	...((((((((((.((((((..&..))))))-))))))))))...	CUGGAGGAGGUCGCCUUGGACG&AAUCCAAG-CGAUCUUUUCGUA	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN6471_c0_g1_4737_TPlot.pdf
TRINITY_DN6471_c0_g1:5449	si_s375	TRINITY_DN6471_c0_g1	5437	5463	5449	-44.10	-29.00	0.657596371882086	15	1-2,5463-5462;3-8,5460-5455;9-11,5450-5448;12-19,5446-5439	x-x,5461-5461[BULt];x-x,5454-5451[BULt];x-x,5447-5447[BULt];20-21,5438-5437[UP3]	..((((((((.(((....((((((.((&))-))))))----)))-))))))))..	GCGGCGGACAGUGCCACCGAGCGACUC&GA-UCGCUC----GCG-UGUCCGCCUU	2	0.998313119563257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN6471_c0_g1_5449_TPlot.pdf
TRINITY_DN64758_c0_g1:216	si_a56	TRINITY_DN64758_c0_g1	205	226	216	-38.90	-25.30	0.650385604113111	8	1-7,226-220;9-17,217-209;19-20,207-206	8-8,219-218[AILt];18-18,208-208[SIL];21-21,205-205[UP3]	.((.(((((((((..(((((((&)))))))-.))))))))).)).	AGACGGAAGCGAGAAUGACUCU&GGAGUCG-ACUCGCUUCUUUCA	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN64758_c0_g1_216_TPlot.pdf
TRINITY_DN647_c0_g1:1395	si_s72	TRINITY_DN647_c0_g1	1377	1404	1395	-24.10	-16.20	0.672199170124481	20	1-12,1404-1393;13-19,1385-1379	x-x,1392-1386[BULt];20-21,1378-1377[UP3]	..(((((((.......((((((((((((&))))))))))))-------)))))))..	AUGGGGAGAAGACACAGAAAGAGUAGAA&UUCUAUUUUUUU-------UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN647_c0_g1_1395_TPlot.pdf
TRINITY_DN647_c0_g1:1531	si_a301	TRINITY_DN647_c0_g1	1520	1541	1531	-27.80	-18.10	0.651079136690648	15.5	6-9,1536-1533;10-18,1531-1523	1-5,1541-1537[UP5];x-x,1532-1532[BULt];19-21,1522-1520[UP3]	...(((((((((.((((.....&.....))))-)))))))))...	UGUUCCGAGCGAUGUCUACUGA&AAAAAAGAU-UCGCUUGGAUUU	4	0.999999829576798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN647_c0_g1_1531_TPlot.pdf
TRINITY_DN647_c0_g1:1587	si_s77	TRINITY_DN647_c0_g1	1571	1596	1587	-25.50	-17.40	0.68235294117647	10	1-10,1596-1587;11-16,1583-1578;17-21,1575-1571	x-x,1586-1584[BULt];x-x,1577-1576[BULt]	(((((..((((((...((((((((((&))))))))))---))))))--)))))	GAAGAAAAAGGAAGCCAGAAGAAGAA&UUUUUUUUCU---UUCCUU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN647_c0_g1_1587_TPlot.pdf
TRINITY_DN647_c0_g1:964	si_a784	TRINITY_DN647_c0_g1	953	973	964	-24.70	-16.70	0.676113360323887	10	3-16,971-958	1-2,973-972[UP5];17-21,957-953[UP3]	.....((((((((((((((..&..)))))))))))))).....	CUUCCAGAAGAAUAGGAGAAG&ACUCUUCUAUUUUUCUAUUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN647_c0_g1_964_TPlot.pdf
TRINITY_DN6480_c0_g1:792	si_a399	TRINITY_DN6480_c0_g1	781	802	792	-22.60	-15.00	0.663716814159292	7.5	2-9,801-794;10-19,792-783	1-1,802-802[UP5];x-x,793-793[BULt];20-21,782-781[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	AGAGGCAAGAUAUAUUCUAUAA&AUAUAGAAU-UGUUUUGUUUAU	4	0.999999998581986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN6480_c0_g1_792_TPlot.pdf
TRINITY_DN6480_c0_g1:794	si_a487	TRINITY_DN6480_c0_g1	781	803	794	-24.80	-16.30	0.657258064516129	7	3-15,801-789;16-21,786-781	1-2,803-802[UP5];x-x,788-787[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	AGAGGCAAGAUAUAUUCUAUAAA&UAUAUAGAAUAUGUC--GUUUUU	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN6480_c0_g1_794_TPlot.pdf
TRINITY_DN64810_c0_g1:258	si_s75	TRINITY_DN64810_c0_g1	247	267	258	-24.00	-17.80	0.741666666666667	8	3-16,265-252;18-20,250-248	1-2,267-266[UP5];17-17,251-251[SIL];21-21,247-247[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	CGAACGGAAAGAGGAAAGAAA&UAUUUUUUUUCUUUCCUUUCU	0	0.503372756378358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN64810_c0_g1_258_TPlot.pdf
TRINITY_DN6486_c0_g3:4777	si_a789	TRINITY_DN6486_c0_g3	4764	4788	4777	-24.80	-16.20	0.653225806451613	7	1-6,4788-4783;7-16,4780-4771;17-21,4768-4764	x-x,4782-4781[BULt];x-x,4770-4769[BULt]	(((((..((((((((((..((((((&))))))--))))))))))--)))))	AUUGGCCAAAAUAGAAAAUGAUAGA&UCUAUU--UUUCUAUUUU--CCAAU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN6486_c0_g3_4777_TPlot.pdf
TRINITY_DN6486_c0_g3:5660	si_a123	TRINITY_DN6486_c0_g3	5649	5669	5660	-26.60	-18.20	0.684210526315789	5	1-10,5669-5660;12-17,5658-5653;19-21,5651-5649	11-11,5659-5659[SIL];18-18,5652-5652[SIL]	(((.((((((.((((((((((&)))))))))).)))))).)))	UUAGUAUUGUGAUGAAACAAG&CUUGUUUUAUAGCAAUAGUAA	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN6486_c0_g3_5660_TPlot.pdf
TRINITY_DN6486_c0_g3:5891	si_a204	TRINITY_DN6486_c0_g3	5880	5900	5891	-26.30	-17.30	0.657794676806084	5.5	2-10,5899-5891;12-20,5889-5881	1-1,5900-5900[UP5];11-11,5890-5890[SIL];21-21,5880-5880[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	CAAUUAGUUGUUUUAUUGGUA&CACUAAUAAAUCGACUAAUUA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN6486_c0_g3_5891_TPlot.pdf
TRINITY_DN6487_c0_g1:10490	si_a740	TRINITY_DN6487_c0_g1	10477	10501	10490	-40.60	-29.30	0.721674876847291	9.5	1-9,10501-10493;10-17,10490-10483;19-21,10479-10477	x-x,10492-10491[BULt];18-18,10482-10480[AILt]	(((...((((((((..(((((((((&)))))))))--))))))))--.)))	AGGACGUCGUGGCCGAGGGGGUGAA&UUUACCCCU--GGCCAUGA--ACCU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a740_TRINITY_DN6487_c0_g1_10490_TPlot.pdf
TRINITY_DN6487_c0_g1:10496	si_a736	TRINITY_DN6487_c0_g1	10483	10505	10496	-40.20	-31.10	0.77363184079602	8	3-13,10503-10493;14-21,10490-10483	1-2,10505-10504[UP5];x-x,10492-10491[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	UCGUGGCCGAGGGGGUGAAGGCC&CAUCUUUACCCCU--GGCCAUGA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN6487_c0_g1_10496_TPlot.pdf
TRINITY_DN6487_c0_g1:10497	si_a735	TRINITY_DN6487_c0_g1	10484	10506	10497	-41.70	-29.10	0.697841726618705	10	4-14,10503-10493;15-21,10490-10484	1-3,10506-10504[UP5];x-x,10492-10491[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	CGUGGCCGAGGGGGUGAAGGCCG&GCAUCUUUACCCCU--GGCCAUG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN6487_c0_g1_10497_TPlot.pdf
TRINITY_DN6487_c0_g1:2934	si_s533	TRINITY_DN6487_c0_g1	2923	2943	2934	-28.80	-20.40	0.708333333333333	12	3-7,2941-2937;9-19,2935-2925	1-2,2943-2942[UP5];8-8,2936-2936[SIL];20-21,2924-2923[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	UCGGUCGGGUCGGCGGUGAGA&AAUCAUUUUUGAUCCGAUCAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN6487_c0_g1_2934_TPlot.pdf
TRINITY_DN6487_c0_g1:5020	si_s76	TRINITY_DN6487_c0_g1	5009	5029	5020	-23.60	-15.40	0.652542372881356	17.5	9-19,5021-5011	1-8,5029-5022[UP5];20-21,5010-5009[UP3]	..(((((((((((........&........)))))))))))..	ACGGAAGGAAAGAUCUUCGUU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6487_c0_g1_5020_TPlot.pdf
TRINITY_DN6487_c0_g1:5247	si_a764	TRINITY_DN6487_c0_g1	5236	5256	5247	-28.90	-19.00	0.657439446366782	10	3-8,5254-5249;10-19,5247-5238	1-2,5256-5255[UP5];9-9,5248-5248[SIL];20-21,5237-5236[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	GAGAAUCAAUCGCAAGCUCUU&UUGGGUUUUUGAUUGAUUCAA	3	0.999999997374536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN6487_c0_g1_5247_TPlot.pdf
TRINITY_DN6487_c0_g1:5691	si_a757	TRINITY_DN6487_c0_g1	5679	5704	5691	-33.10	-22.20	0.670694864048338	13	1-9,5704-5696;10-14,5691-5687;15-20,5685-5680	x-x,5695-5692[BULt];x-x,5686-5686[BULt];21-21,5679-5679[UP3]	.((((((.(((((....(((((((((&)))))))))----)))))-)))))).	UGUCGGACAGCCCCUUCAAAGGGGGU&ACCUCCUUU----GGGUU-UUUGAUU	3	0.999999907410385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6487_c0_g1_5691_TPlot.pdf
TRINITY_DN6487_c0_g1:5827	si_a784	TRINITY_DN6487_c0_g1	5816	5837	5827	-24.70	-16.10	0.651821862348178	11	2-7,5836-5831;10-21,5827-5816	1-1,5837-5837[UP5];8-9,5830-5828[AILt]	((((((((((((...((((((.&.))))))-..))))))))))))	GGGGUGGAGGAAAUUGAAGAGG&ACUCUUC-UAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6487_c0_g1_5827_TPlot.pdf
TRINITY_DN6487_c0_g1:5828	si_a783	TRINITY_DN6487_c0_g1	5817	5841	5828	-24.70	-16.68	0.675303643724696	14	1-9,5841-5833;11-21,5827-5817	10-10,5832-5828[AILt]	(((((((((((.....(((((((((&)))))))))----.)))))))))))	GGGUGGAGGAAAUUGAAGAGGAGUU&AACUCUUCU----AUUUUUCUAUUU	2	0.999999996303917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN6487_c0_g1_5828_TPlot.pdf
TRINITY_DN6487_c0_g1:5833	si_a782	TRINITY_DN6487_c0_g1	5818	5842	5833	-26.40	-18.68	0.707575757575758	13.5	1-10,5842-5833;12-21,5827-5818	11-11,5832-5828[AILt]	((((((((((.....((((((((((&))))))))))----.))))))))))	GGUGGAGGAAAUUGAAGAGGAGUUG&CAACUCUUCU----AUUUUUCUAUU	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN6487_c0_g1_5833_TPlot.pdf
TRINITY_DN6487_c0_g1:5834	si_a781	TRINITY_DN6487_c0_g1	5819	5843	5834	-27.40	-18.18	0.663503649635036	14	2-11,5842-5833;13-21,5827-5819	1-1,5843-5843[UP5];12-12,5832-5828[AILt]	(((((((((.....((((((((((.&.))))))))))----.)))))))))	GUGGAGGAAAUUGAAGAGGAGUUGU&UCAACUCUUCU----AUUUUUCUAU	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN6487_c0_g1_5834_TPlot.pdf
TRINITY_DN6487_c0_g1:5933	si_a334	TRINITY_DN6487_c0_g1	5922	5944	5933	-30.70	-20.50	0.667752442996743	11	1-7,5944-5938;8-16,5935-5927	x-x,5937-5936[BULt];17-21,5926-5922[UP3]	.....(((((((((..(((((((&)))))))--))))))))).....	CUCAGCGGGACAGGAUGAAUGAA&UUUAUUC--CUUGUCCCGAAAAU	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN6487_c0_g1_5933_TPlot.pdf
TRINITY_DN6487_c0_g1:5934	si_a333	TRINITY_DN6487_c0_g1	5923	5945	5934	-30.60	-20.70	0.676470588235294	11	2-8,5944-5938;9-17,5935-5927	1-1,5945-5945[UP5];x-x,5937-5936[BULt];18-21,5926-5923[UP3]	....(((((((((..(((((((.&.)))))))--)))))))))....	UCAGCGGGACAGGAUGAAUGAAU&UUUUAUUC--CUUGUCCCGAAAA	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN6487_c0_g1_5934_TPlot.pdf
TRINITY_DN6487_c0_g1:5935	si_a332	TRINITY_DN6487_c0_g1	5924	5946	5935	-30.60	-20.70	0.676470588235294	12	3-9,5944-5938;10-18,5935-5927	1-2,5946-5945[UP5];x-x,5937-5936[BULt];19-21,5926-5924[UP3]	...(((((((((..(((((((..&..)))))))--)))))))))...	CAGCGGGACAGGAUGAAUGAAUG&UUUUUAUUC--CUUGUCCCGAAA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN6487_c0_g1_5935_TPlot.pdf
TRINITY_DN6487_c0_g1:5938	si_a331	TRINITY_DN6487_c0_g1	5925	5947	5938	-30.60	-20.70	0.676470588235294	13	4-10,5944-5938;11-19,5935-5927	1-3,5947-5945[UP5];x-x,5937-5936[BULt];20-21,5926-5925[UP3]	..(((((((((..(((((((...&...)))))))--)))))))))..	AGCGGGACAGGAUGAAUGAAUGG&UUUUUUAUUC--CUUGUCCCGAA	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN6487_c0_g1_5938_TPlot.pdf
TRINITY_DN6487_c0_g1:5939	si_a330	TRINITY_DN6487_c0_g1	5926	5948	5939	-30.50	-20.90	0.685245901639344	10.5	1-3,5948-5946;5-11,5944-5938;12-20,5935-5927	4-4,5945-5945[SIL];x-x,5937-5936[BULt];21-21,5926-5926[UP3]	.(((((((((..(((((((.(((&))).)))))))--))))))))).	GCGGGACAGGAUGAAUGAAUGGA&UUUUUUUAUUC--CUUGUCCCGA	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN6487_c0_g1_5939_TPlot.pdf
TRINITY_DN6487_c0_g1:5940	si_a329	TRINITY_DN6487_c0_g1	5927	5950	5940	-29.60	-20.80	0.702702702702703	10.5	1-5,5950-5946;6-12,5944-5938;13-21,5935-5927	x-x,5945-5945[BULt];x-x,5937-5936[BULt]	(((((((((..(((((((.(((((&)))))-)))))))--)))))))))	CGGGACAGGAUGAAUGAAUGGAGU&AUUUU-UUUAUUC--CUUGUCCCG	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN6487_c0_g1_5940_TPlot.pdf
TRINITY_DN6487_c0_g1:5941	si_a328	TRINITY_DN6487_c0_g1	5928	5951	5941	-30.10	-22.20	0.737541528239203	8.5	1-6,5951-5946;7-13,5944-5938;14-21,5935-5928	x-x,5945-5945[BULt];x-x,5937-5936[BULt]	((((((((..(((((((.((((((&))))))-)))))))--))))))))	GGGACAGGAUGAAUGAAUGGAGUC&GAUUUU-UUUAUUC--CUUGUCCC	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN6487_c0_g1_5941_TPlot.pdf
TRINITY_DN6487_c0_g1:5942	si_a327	TRINITY_DN6487_c0_g1	5929	5952	5942	-28.40	-18.90	0.665492957746479	9.5	2-7,5951-5946;8-14,5944-5938;15-21,5935-5929	1-1,5952-5952[UP5];x-x,5945-5945[BULt];x-x,5937-5936[BULt]	(((((((..(((((((.((((((.&.))))))-)))))))--)))))))	GGACAGGAUGAAUGAAUGGAGUCG&UGAUUUU-UUUAUUC--CUUGUCC	2	0.999980166725184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN6487_c0_g1_5942_TPlot.pdf
TRINITY_DN6487_c0_g1:6825	si_s75	TRINITY_DN6487_c0_g1	6814	6834	6825	-24.00	-19.00	0.791666666666667	12.5	7-21,6828-6814	1-6,6834-6829[UP5]	(((((((((((((((......&......)))))))))))))))	AGAAAGGGAAGAGAACUUCAC&UAUUUUUUUUCUUUCCUUUCU	3	0.999957295187837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6487_c0_g1_6825_TPlot.pdf
TRINITY_DN6487_c0_g1:8915	si_s795	TRINITY_DN6487_c0_g1	8904	8923	8915	-30.30	-24.50	0.808580858085809	4.5	1-7,8923-8917;9-21,8916-8904	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	ACGAAGAUGAAGU-UGAGCUU&AAGCUCGUAUUUUAUCUUCGU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN6487_c0_g1_8915_TPlot.pdf
TRINITY_DN6487_c0_g1:9680	si_a370	TRINITY_DN6487_c0_g1	9669	9689	9680	-29.50	-21.10	0.715254237288136	6.5	2-7,9688-9683;9-21,9681-9669	1-1,9689-9689[UP5];8-8,9682-9682[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	CGGAGUCGUUUUUUGUCUGAG&AUCGGAUCAAAAAUGAUUUCG	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN6487_c0_g1_9680_TPlot.pdf
TRINITY_DN6487_c0_g1:9856	si_a118	TRINITY_DN6487_c0_g1	9840	9865	9856	-30.70	-21.10	0.687296416938111	15	1-11,9865-9855;12-18,9849-9843	x-x,9854-9850[BULt];19-21,9842-9840[UP3]	...(((((((.....(((((((((((&)))))))))))-----)))))))...	UGCGCUAUAAUCCCCAACGAGCUUGU&ACGAGCUUGUU-----UUAUAGCAAU	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN6487_c0_g1_9856_TPlot.pdf
TRINITY_DN6489_c0_g1:1857	si_s661	TRINITY_DN6489_c0_g1	1845	1866	1857	-35.40	-23.50	0.663841807909605	6	1-6,1866-1861;8-8,1859-1859;10-14,1857-1853;15-21,1851-1845	7-7,1860-1860[SIL];9-9,1858-1858[SIL];x-x,1852-1852[BULt]	(((((((.(((((.(.((((((&)))))).).)))))-)))))))	UGAUCGAUUUCGAGCGCCCGAU&AUCGGGGGAUCGAA-UUGAUUA	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s661_TRINITY_DN6489_c0_g1_1857_TPlot.pdf
TRINITY_DN648_c0_g1:2360	si_s297	TRINITY_DN648_c0_g1	2349	2370	2360	-29.80	-19.50	0.654362416107383	11	3-8,2368-2363;9-16,2361-2354	1-2,2370-2369[UP5];x-x,2362-2362[BULt];17-21,2353-2349[UP3]	.....((((((((.((((((..&..))))))-)))))))).....	UCAUCUCGCAAUUCCCAGUCAA&UCGAUUGG-AAUUGCGAAAAUU	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN648_c0_g1_2360_TPlot.pdf
TRINITY_DN6492_c0_g1:357	si_a502	TRINITY_DN6492_c0_g1	343	366	357	-32.10	-21.70	0.67601246105919	14.5	1-11,366-356;12-18,352-346	x-x,355-353[BULt];19-21,345-343[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	GACCCAGGGGCAAAGAUGGGAAGC&GUUUUUCGUCU---UCCUUGGAAU	2	0.999996527411654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN6492_c0_g1_357_TPlot.pdf
TRINITY_DN6492_c0_g1:358	si_a501	TRINITY_DN6492_c0_g1	344	367	358	-33.50	-22.10	0.659701492537313	14	2-12,366-356;13-19,352-346	1-1,367-367[UP5];x-x,355-353[BULt];20-21,345-344[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	ACCCAGGGGCAAAGAUGGGAAGCU&CGUUUUUCGUCU---UCCUUGGAA	4	0.999999999996286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN6492_c0_g1_358_TPlot.pdf
TRINITY_DN6493_c0_g1:1537	si_a785	TRINITY_DN6493_c0_g1	1526	1547	1537	-25.90	-17.90	0.691119691119691	5	1-2,1547-1546;4-8,1544-1540;9-21,1538-1526	3-3,1545-1545[SIL];x-x,1539-1539[BULt]	(((((((((((((.(((((.((&)).)))))-)))))))))))))	GAGAGUAGAAAAAUUAGAAUAG&CUCUUCUA-UUUUUCUAUUUUC	4	0.999999999982535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6493_c0_g1_1537_TPlot.pdf
TRINITY_DN6494_c0_g1:660	si_s84	TRINITY_DN6494_c0_g1	649	668	660	-32.30	-22.90	0.708978328173375	9	4-9,665-660;11-21,659-649	1-3,668-666[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	CGAGGGAGAGG-AAGGAACUG&UCUUUCCUUUCUUCUUCUUCG	4	0.999999998292486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6494_c0_g1_660_TPlot.pdf
TRINITY_DN6497_c0_g1:390	si_a370	TRINITY_DN6497_c0_g1	379	399	390	-29.50	-20.10	0.68135593220339	5	1-8,399-392;10-17,390-383;19-21,381-379	9-9,391-391[SIL];18-18,382-382[SIL]	(((.((((((((.((((((((&)))))))).)))))))).)))	CGAUGUCGUUUUCGAUUCGAU&AUCGGAUCAAAAAUGAUUUCG	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN6497_c0_g1_390_TPlot.pdf
TRINITY_DN6499_c0_g1:293	si_a494	TRINITY_DN6499_c0_g1	283	302	293	-29.50	-19.20	0.650847457627119	11	5-13,298-290;15-21,289-283	1-4,302-299[UP5];14-14,x-x[BULq]	(((((((-(((((((((....&....))))))))).)))))))	GGGGACG-AAGAUGACAAGGA&AAUAUGUCGUUUUUCGUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN6499_c0_g1_293_TPlot.pdf
TRINITY_DN649_c0_g1:1155	si_a116	TRINITY_DN649_c0_g1	1141	1164	1155	-31.10	-21.22	0.682315112540193	7	2-15,1163-1150;18-21,1144-1141	1-1,1164-1164[UP5];16-17,1149-1145[AILt]	((((.....((((((((((((((.&.))))))))))))))---..))))	UGUUCAAAGGAAACAAGCUCGUAC&AUACGAGCUUGUUUU---AUAGCA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN649_c0_g1_1155_TPlot.pdf
TRINITY_DN649_c0_g1:1160	si_a111	TRINITY_DN649_c0_g1	1149	1169	1160	-26.20	-20.80	0.793893129770992	12.5	7-20,1163-1150	1-6,1169-1164[UP5];21-21,1149-1149[UP3]	.((((((((((((((......&......)))))))))))))).	GGAAACAAGCUCGUACAGAUG&AUAAAAUACGAGCUUGUUUUA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN649_c0_g1_1160_TPlot.pdf
TRINITY_DN649_c0_g1:956	si_s891	TRINITY_DN649_c0_g1	945	965	956	-29.60	-21.30	0.719594594594595	16	8-19,958-947	1-7,965-959[UP5];20-21,946-945[UP3]	..((((((((((((.......&.......))))))))))))..	UGGAAGAGAGAGCCCAAAGGU&AUAAAUAGGCUUUCUCUUCAA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN649_c0_g1_956_TPlot.pdf
TRINITY_DN64_c0_g1:633	si_s344	TRINITY_DN64_c0_g1	624	642	633	-33.40	-24.30	0.727544910179641	5	1-13,642-630;17-21,628-624	14-16,629-629[AILq]	(((((.--(((((((((((((&)))))))))))))...)))))	AUUUCA--GUCUCCCCGUGGG&UUCACGGGGAGAUAAAGAAAU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN64_c0_g1_633_TPlot.pdf
TRINITY_DN64_c0_g1:695	si_a317	TRINITY_DN64_c0_g1	684	706	695	-24.30	-16.10	0.662551440329218	10.5	1-6,706-701;7-9,699-697;11-21,694-684	x-x,700-700[BULt];10-10,696-695[AILt]	(((((((((((..(((.((((((&))))))-)))-.)))))))))))	UGGAAAGAUCAAGGGAGUGGGUC&GAUUUA-UCC-AUGAUUUUUUUA	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN64_c0_g1_695_TPlot.pdf
TRINITY_DN64_c0_g1:719	si_s79	TRINITY_DN64_c0_g1	708	728	719	-26.20	-18.30	0.698473282442748	9	1-8,728-721;10-13,719-716;15-21,714-708	9-9,720-720[SIL];14-14,715-715[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	GAGGGGAUGGGGUGGAAGGAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN64_c0_g1_719_TPlot.pdf
TRINITY_DN64_c0_g1:776	si_a127	TRINITY_DN64_c0_g1	765	785	776	-23.10	-16.80	0.727272727272727	9	1-14,785-772	15-21,771-765[UP3]	.......((((((((((((((&)))))))))))))).......	CAUUUGCCUAUUGCUAUGAGA&UUUUAUAGCAAUAGUAAUUAA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN64_c0_g1_776_TPlot.pdf
TRINITY_DN64_c0_g2:10471	si_s435	TRINITY_DN64_c0_g2	10460	10485	10471	-20.90	-13.70	0.655502392344498	15.5	1-6,10485-10480;9-21,10472-10460	7-8,10479-10473[AILt]	(((((((((((((.......((((((&))))))-----..)))))))))))))	AUGUAUAAUGUGUUGCCUACUUAUUG&CAAUAA-----UUACAUAUUAUAUAU	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN64_c0_g2_10471_TPlot.pdf
TRINITY_DN64_c0_g2:2446	si_a817	TRINITY_DN64_c0_g2	2435	2455	2446	-30.90	-20.20	0.653721682847896	3.5	1-12,2455-2444;14-15,2442-2441;18-21,2438-2435	13-13,2443-2443[SIL];16-17,2440-2439[SIL]	((((..((.((((((((((((&)))))))))))).))..))))	UUCUCACUCUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN64_c0_g2_2446_TPlot.pdf
TRINITY_DN64_c0_g2:3633	si_s729	TRINITY_DN64_c0_g2	3622	3643	3633	-32.10	-22.40	0.697819314641745	8	1-8,3643-3636;9-17,3634-3626	x-x,3635-3635[BULt];18-21,3625-3622[UP3]	....(((((((((.((((((((&))))))))-)))))))))....	CUGCCACCUGUCUCAGAUAGUG&UAUUAUCU-AGACGGGUGAAUA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN64_c0_g2_3633_TPlot.pdf
TRINITY_DN64_c0_g2:3634	si_s728	TRINITY_DN64_c0_g2	3623	3644	3634	-31.90	-22.40	0.702194357366771	8.5	2-9,3643-3636;10-18,3634-3626	1-1,3644-3644[UP5];x-x,3635-3635[BULt];19-21,3625-3623[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	UGCCACCUGUCUCAGAUAGUGA&AUAUUAUCU-AGACGGGUGAAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN64_c0_g2_3634_TPlot.pdf
TRINITY_DN64_c0_g2:3636	si_s727	TRINITY_DN64_c0_g2	3624	3645	3636	-33.80	-22.40	0.662721893491124	9.5	3-10,3643-3636;11-19,3634-3626	1-2,3645-3644[UP5];x-x,3635-3635[BULt];20-21,3625-3624[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	GCCACCUGUCUCAGAUAGUGAU&GAUAUUAUCU-AGACGGGUGAA	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s727_TRINITY_DN64_c0_g2_3636_TPlot.pdf
TRINITY_DN64_c0_g2:3637	si_s726	TRINITY_DN64_c0_g2	3625	3646	3637	-34.40	-22.40	0.651162790697674	10.5	4-11,3643-3636;12-20,3634-3626	1-3,3646-3644[UP5];x-x,3635-3635[BULt];21-21,3625-3625[UP3]	.(((((((((.((((((((...&...))))))))-))))))))).	CCACCUGUCUCAGAUAGUGAUU&AGAUAUUAUCU-AGACGGGUGA	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s726_TRINITY_DN64_c0_g2_3637_TPlot.pdf
TRINITY_DN64_c0_g2:3638	si_s725	TRINITY_DN64_c0_g2	3626	3648	3638	-33.40	-21.90	0.655688622754491	7.5	2-5,3647-3644;6-12,3642-3636;13-21,3634-3626	1-1,3648-3648[UP5];x-x,3643-3643[BULt];x-x,3635-3635[BULt]	(((((((((.(((((((.((((.&.))))-)))))))-)))))))))	CACCUGUCUCAGAUAGUGAUUUG&AAGAU-AUUAUCU-AGACGGGUG	2	0.732675439465396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s725_TRINITY_DN64_c0_g2_3638_TPlot.pdf
TRINITY_DN64_c0_g2:8273	si_a397	TRINITY_DN64_c0_g2	8262	8282	8273	-24.00	-16.20	0.675	7	4-21,8279-8262	1-3,8282-8280[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAACAGAAUAAUUUUAUAGUU&GAAUAUAGAAUUGUUUUGUUU	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN64_c0_g2_8273_TPlot.pdf
TRINITY_DN64_c0_g2:9674	si_s344	TRINITY_DN64_c0_g2	9665	9683	9674	-33.40	-23.38	0.7	5.5	1-12,9683-9672;17-21,9669-9665	13-16,9671-9670[AILq]	(((((..--((((((((((((&))))))))))))....)))))	AUUUCAU--UCUCCCCGUGGG&UUCACGGGGAGAUAAAGAAAU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN64_c0_g2_9674_TPlot.pdf
TRINITY_DN64_c0_g2:9712	si_a6	TRINITY_DN64_c0_g2	9695	9721	9712	-29.10	-19.10	0.656357388316151	19	4-10,9718-9712;11-20,9705-9696	1-3,9721-9719[UP5];x-x,9711-9706[BULt];21-21,9695-9695[UP3]	.((((((((((......(((((((...&...)))))))------)))))))))).	UAUAGGCUUUCCUAGCCUCUUCAGCCG&AAAUUGAAGA------GAAAGCCUAUU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a6_TRINITY_DN64_c0_g2_9712_TPlot.pdf
TRINITY_DN64_c0_g2:9736	si_a317	TRINITY_DN64_c0_g2	9725	9747	9736	-24.30	-16.10	0.662551440329218	10	1-6,9747-9742;7-9,9740-9738;11-21,9735-9725	x-x,9741-9741[BULt];10-10,9737-9736[AILt]	(((((((((((..(((.((((((&))))))-)))-.)))))))))))	UGGAAGGAUCAAGGGAGUAGGUC&GAUUUA-UCC-AUGAUUUUUUUA	4	0.999999998893116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN64_c0_g2_9736_TPlot.pdf
TRINITY_DN64_c0_g2:9761	si_s78	TRINITY_DN64_c0_g2	9750	9770	9761	-26.20	-18.30	0.698473282442748	8.5	2-9,9769-9762;11-14,9760-9757;16-21,9755-9750	1-1,9770-9770[UP5];10-10,9761-9761[SIL];15-15,9756-9756[SIL]	((((((.((((.((((((((.&.)))))))).)))).))))))	AGGGGAUGGGAUGGAAGGAAU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN64_c0_g2_9761_TPlot.pdf
TRINITY_DN64_c0_g2:9763	si_s74	TRINITY_DN64_c0_g2	9749	9772	9763	-25.00	-16.40	0.656	11	1-10,9772-9763;11-14,9760-9757;15-21,9755-9749	x-x,9762-9761[BULt];x-x,9756-9756[BULt]	(((((((.((((..((((((((((&))))))))))--))))-)))))))	GAGGGGAUGGGAUGGAAGGAAUGG&CUAUUUUUUU--UCUU-UCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN64_c0_g2_9763_TPlot.pdf
TRINITY_DN64_c0_g2:9819	si_a125	TRINITY_DN64_c0_g2	9808	9828	9819	-25.00	-16.80	0.672	10	3-16,9826-9813	1-2,9828-9827[UP5];17-21,9812-9808[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUGCCUAUUGCUAUGAGAAA&UGUUUUAUAGCAAUAGUAAUU	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN64_c0_g2_9819_TPlot.pdf
TRINITY_DN64_c0_g2:9820	si_a124	TRINITY_DN64_c0_g2	9809	9829	9820	-25.10	-16.80	0.669322709163347	11	4-17,9826-9813	1-3,9829-9827[UP5];18-21,9812-9809[UP3]	....((((((((((((((...&...))))))))))))))....	UUGCCUAUUGCUAUGAGAAAA&UUGUUUUAUAGCAAUAGUAAU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN64_c0_g2_9820_TPlot.pdf
TRINITY_DN64_c1_g1:199	si_s871	TRINITY_DN64_c1_g1	188	211	199	-31.00	-20.60	0.664516129032258	13	2-9,210-203;10-16,199-193	1-1,211-211[UP5];x-x,202-200[BULt];17-21,192-188[UP3]	.....(((((((...((((((((.&.))))))))---))))))).....	GGUUCAGUUCUGACAAGACCGGUC&UACCGGUCU---UAGAACUAAAAA	2	0.766879411814924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN64_c1_g1_199_TPlot.pdf
TRINITY_DN6500_c0_g1:377	si_a667	TRINITY_DN6500_c0_g1	363	386	377	-32.10	-23.50	0.73208722741433	10	1-11,386-376;12-17,372-367;19-20,365-364	x-x,375-373[BULt];18-18,366-366[SIL];21-21,363-363[UP3]	.((.((((((...(((((((((((&)))))))))))---)))))).)).	AGAUUGGGGACGUAUCAAUGGGCA&UGCCUAUUGAU---UCCUUAUUCA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN6500_c0_g1_377_TPlot.pdf
TRINITY_DN6500_c0_g1:601	si_s482	TRINITY_DN6500_c0_g1	589	610	601	-21.20	-14.02	0.661320754716981	9	1-11,610-600;15-21,595-589	12-14,599-596[AILt]	(((((((....(((((((((((&)))))))))))-...)))))))	AUAUUUAUUGCGAAUAUGGGGU&AUCCUAUAUUU-AUUUAAAUAU	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN6500_c0_g1_601_TPlot.pdf
TRINITY_DN6500_c0_g1:996	si_s693	TRINITY_DN6500_c0_g1	985	1005	996	-23.90	-15.80	0.661087866108787	8.5	1-5,1005-1001;7-17,999-989	6-6,1000-1000[SIL];18-21,988-985[UP3]	....(((((((((((.(((((&))))).)))))))))))....	UUUGGGAUCGACUAAAUGAAU&GUUUAAUUAGUCGAUUUAUUA	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN6500_c0_g1_996_TPlot.pdf
TRINITY_DN6502_c0_g1:1031	si_a319	TRINITY_DN6502_c0_g1	1020	1040	1031	-22.40	-15.30	0.683035714285714	12.5	5-17,1036-1024	1-4,1040-1037[UP5];18-21,1023-1020[UP3]	....(((((((((((((....&....)))))))))))))....	CAACGAAAAAUCGUGGAAGCC&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999871404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN6502_c0_g1_1031_TPlot.pdf
TRINITY_DN6504_c0_g1:1043	si_s561	TRINITY_DN6504_c0_g1	1032	1052	1043	-31.10	-20.50	0.659163987138264	7.5	3-12,1050-1041;14-20,1039-1033	1-2,1052-1051[UP5];13-13,1040-1040[SIL];21-21,1032-1032[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	ACCUUGUUGUGAAAAUGUUCC&UUAAUAUUUUCGGGACAAGGA	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s561_TRINITY_DN6504_c0_g1_1043_TPlot.pdf
TRINITY_DN6504_c0_g1:1044	si_s560	TRINITY_DN6504_c0_g1	1033	1053	1044	-30.20	-20.50	0.678807947019868	8	4-13,1050-1041;15-21,1039-1033	1-3,1053-1051[UP5];14-14,1040-1040[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	CCUUGUUGUGAAAAUGUUCCA&AUUAAUAUUUUCGGGACAAGG	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s560_TRINITY_DN6504_c0_g1_1044_TPlot.pdf
TRINITY_DN6506_c0_g1:3443	si_a725	TRINITY_DN6506_c0_g1	3432	3451	3443	-38.10	-25.40	0.666666666666667	8	1-7,3451-3445;9-18,3444-3435	8-8,x-x[BULq];19-21,3434-3432[UP3]	...((((((((((-(((((((&))))))).))))))))))...	AAAGGAGAUGCCC-AGUGGCG&CGUUACUCGGGCAUCUUUACC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN6506_c0_g1_3443_TPlot.pdf
TRINITY_DN6506_c0_g1:3476	si_a778	TRINITY_DN6506_c0_g1	3464	3487	3476	-28.30	-18.50	0.653710247349823	7.5	1-8,3487-3480;9-13,3477-3473;15-21,3470-3464	x-x,3479-3478[BULt];14-14,3472-3471[AILt]	(((((((..(((((..((((((((&))))))))--)))))-.)))))))	GGAAAAUCUGGAGAACGUUGAAUC&GAUUCAAC--UCUUC-UAUUUUUC	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN6506_c0_g1_3476_TPlot.pdf
TRINITY_DN6506_c0_g1:81	si_a883	TRINITY_DN6506_c0_g1	70	90	81	-27.20	-19.80	0.727941176470588	6	2-10,89-81;12-19,79-72	1-1,90-90[UP5];11-11,80-80[SIL];20-21,71-70[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	CUUUGCUGUAAUGAUUGCAAA&GUUGCAAUCAAUAUAGUAAUA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN6506_c0_g1_81_TPlot.pdf
TRINITY_DN6507_c0_g1:329	si_s305	TRINITY_DN6507_c0_g1	317	338	329	-30.30	-20.10	0.663366336633663	9	3-4,336-335;6-17,333-322;18-21,320-317	1-2,338-337[UP5];5-5,334-334[SIL];x-x,321-321[BULt]	((((.((((((((((((.((..&..)).))))))))))))-))))	GAGGCACAGGAUUUUUGGGAAA&AAUUGCGAAAAUUCUGU-CCUU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN6507_c0_g1_329_TPlot.pdf
TRINITY_DN6511_c0_g1:1255	si_s90	TRINITY_DN6511_c0_g1	1239	1264	1255	-35.30	-24.02	0.680453257790368	11	1-13,1264-1252;15-21,1245-1239	14-14,1251-1246[AILt]	(((((((......(((((((((((((&)))))))))))))-----.)))))))	CUGAAGCCACAGCGAGAGGGAGGAGG&CUUUCUUCUUCUU-----CGCUUCGG	4	0.999999999834295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6511_c0_g1_1255_TPlot.pdf
TRINITY_DN6511_c0_g1:1265	si_s80	TRINITY_DN6511_c0_g1	1254	1274	1265	-28.20	-19.30	0.684397163120567	15.5	8-21,1267-1254	1-7,1274-1268[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGGAGGAGGGAAUAACUUC&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6511_c0_g1_1265_TPlot.pdf
TRINITY_DN6511_c0_g1:1497	si_a361	TRINITY_DN6511_c0_g1	1486	1506	1497	-29.00	-21.70	0.748275862068965	7	1-3,1506-1504;5-18,1502-1489	4-4,1503-1503[SIL];19-21,1488-1486[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AUCUGGUCCGAUCAAAGGAGG&UCUAUUUUGAUCGGAUCAAAA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN6511_c0_g1_1497_TPlot.pdf
TRINITY_DN6511_c0_g1:1499	si_a359	TRINITY_DN6511_c0_g1	1488	1508	1499	-29.20	-21.80	0.746575342465754	8.5	3-5,1506-1504;7-20,1502-1489	1-2,1508-1507[UP5];6-6,1503-1503[SIL];21-21,1488-1488[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	CUGGUCCGAUCAAAGGAGGCG&AUUCUAUUUUGAUCGGAUCAA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN6511_c0_g1_1499_TPlot.pdf
TRINITY_DN6511_c0_g1:1500	si_a358	TRINITY_DN6511_c0_g1	1489	1509	1500	-29.10	-21.50	0.738831615120275	9.5	4-6,1506-1504;8-21,1502-1489	1-3,1509-1507[UP5];7-7,1503-1503[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UGGUCCGAUCAAAGGAGGCGA&AAUUCUAUUUUGAUCGGAUCA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN6511_c0_g1_1500_TPlot.pdf
TRINITY_DN6511_c0_g1:1501	si_a357	TRINITY_DN6511_c0_g1	1490	1510	1501	-28.80	-20.00	0.694444444444444	11.5	5-7,1506-1504;9-21,1502-1490	1-4,1510-1507[UP5];8-8,1503-1503[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GGUCCGAUCAAAGGAGGCGAG&UAAUUCUAUUUUGAUCGGAUC	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN6511_c0_g1_1501_TPlot.pdf
TRINITY_DN6511_c0_g1:1517	si_a141	TRINITY_DN6511_c0_g1	1506	1526	1517	-23.80	-15.90	0.668067226890756	16.5	8-19,1519-1508	1-7,1526-1520[UP5];20-21,1507-1506[UP3]	..((((((((((((.......&.......))))))))))))..	GCGAGCAGCAACGAAGGCGGG&UAAUUAAUCGUUGUUGUUUUA	3	0.99999999995512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN6511_c0_g1_1517_TPlot.pdf
TRINITY_DN6511_c0_g1:1684	si_a686	TRINITY_DN6511_c0_g1	1673	1694	1684	-37.10	-24.70	0.665768194070081	9	1-3,1694-1692;4-7,1690-1687;9-17,1685-1677	x-x,1691-1691[BULt];8-8,1686-1686[SIL];18-21,1676-1673[UP3]	....(((((((((.((((.(((&)))-)))).)))))))))....	GAAGGUGUUCGAGCCCGCAGUG&CAC-GCGGUUUCGAACACAACU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a686_TRINITY_DN6511_c0_g1_1684_TPlot.pdf
TRINITY_DN6511_c0_g1:1687	si_a683	TRINITY_DN6511_c0_g1	1676	1697	1687	-35.80	-26.40	0.737430167597765	8	2-6,1696-1692;7-10,1690-1687;12-20,1685-1677	1-1,1697-1697[UP5];x-x,1691-1691[BULt];11-11,1686-1686[SIL];21-21,1676-1676[UP3]	.(((((((((.((((.(((((.&.)))))-)))).))))))))).	GGUGUUCGAGCCCGCAGUGGAG&AUUCAC-GCGGUUUCGAACACA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN6511_c0_g1_1687_TPlot.pdf
TRINITY_DN6511_c0_g1:1688	si_a682	TRINITY_DN6511_c0_g1	1677	1698	1688	-35.50	-26.00	0.732394366197183	8.5	3-7,1696-1692;8-11,1690-1687;13-21,1685-1677	1-2,1698-1697[UP5];x-x,1691-1691[BULt];12-12,1686-1686[SIL]	(((((((((.((((.(((((..&..)))))-)))).)))))))))	GUGUUCGAGCCCGCAGUGGAGG&UAUUCAC-GCGGUUUCGAACAC	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a682_TRINITY_DN6511_c0_g1_1688_TPlot.pdf
TRINITY_DN6511_c0_g1:1689	si_a681	TRINITY_DN6511_c0_g1	1678	1699	1689	-33.80	-22.90	0.677514792899408	9.5	4-8,1696-1692;9-12,1690-1687;14-21,1685-1678	1-3,1699-1697[UP5];x-x,1691-1691[BULt];13-13,1686-1686[SIL]	((((((((.((((.(((((...&...)))))-)))).))))))))	UGUUCGAGCCCGCAGUGGAGGA&UUAUUCAC-GCGGUUUCGAACA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN6511_c0_g1_1689_TPlot.pdf
TRINITY_DN6511_c0_g1:1724	si_s630	TRINITY_DN6511_c0_g1	1713	1736	1724	-35.60	-26.20	0.735955056179775	11	1-7,1736-1730;8-19,1726-1715	x-x,1729-1727[BULt];20-21,1714-1713[UP3]	..((((((((((((...(((((((&)))))))---))))))))))))..	CGGGACGCCUACGACCUAGAGGUC&GAUCUUU---UCGUAGGCGUUUGC	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN6511_c0_g1_1724_TPlot.pdf
TRINITY_DN6511_c0_g1:1726	si_s628	TRINITY_DN6511_c0_g1	1715	1738	1726	-35.40	-26.20	0.740112994350283	12	3-9,1736-1730;10-21,1726-1715	1-2,1738-1737[UP5];x-x,1729-1727[BULt]	((((((((((((...(((((((..&..)))))))---))))))))))))	GGACGCCUACGACCUAGAGGUCAA&GCGAUCUUU---UCGUAGGCGUUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN6511_c0_g1_1726_TPlot.pdf
TRINITY_DN6511_c0_g1:1730	si_s627	TRINITY_DN6511_c0_g1	1716	1739	1730	-36.10	-25.70	0.71191135734072	13.5	4-10,1736-1730;11-21,1726-1716	1-3,1739-1737[UP5];x-x,1729-1727[BULt]	(((((((((((...(((((((...&...)))))))---)))))))))))	GACGCCUACGACCUAGAGGUCAAC&AGCGAUCUUU---UCGUAGGCGUU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN6511_c0_g1_1730_TPlot.pdf
TRINITY_DN6511_c0_g1:1731	si_s626	TRINITY_DN6511_c0_g1	1717	1740	1731	-36.10	-24.40	0.67590027700831	15	5-11,1736-1730;12-21,1726-1717	1-4,1740-1737[UP5];x-x,1729-1727[BULt]	((((((((((...(((((((....&....)))))))---))))))))))	ACGCCUACGACCUAGAGGUCAACU&AAGCGAUCUUU---UCGUAGGCGU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN6511_c0_g1_1731_TPlot.pdf
TRINITY_DN6511_c0_g1:2190	si_s93	TRINITY_DN6511_c0_g1	2175	2199	2190	-34.80	-24.90	0.71551724137931	11	1-14,2199-2186;15-18,2181-2178	x-x,2185-2182[BULt];19-21,2177-2175[UP3]	...((((....((((((((((((((&))))))))))))))----))))...	GAGCCGGCGAGGGCGGAGGAGGAGA&UCUUCUUCUUCGCU----UCGGAUU	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN6511_c0_g1_2190_TPlot.pdf
TRINITY_DN6511_c0_g1:2193	si_s90	TRINITY_DN6511_c0_g1	2178	2202	2193	-35.30	-24.90	0.705382436260623	12.5	4-17,2199-2186;18-21,2181-2178	1-3,2202-2200[UP5];x-x,2185-2182[BULt]	((((....((((((((((((((...&...))))))))))))))----))))	CCGGCGAGGGCGGAGGAGGAGAUUC&CUUUCUUCUUCUUCGCU----UCGG	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6511_c0_g1_2193_TPlot.pdf
TRINITY_DN6511_c0_g1:2194	si_s89	TRINITY_DN6511_c0_g1	2182	2203	2194	-35.30	-23.90	0.677053824362606	11	5-18,2199-2186;19-21,2184-2182	1-4,2203-2200[UP5];x-x,2185-2185[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	CGAGGGCGGAGGAGGAGAUUCG&CCUUUCUUCUUCUUCGCU-UCG	3	0.999999999990932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6511_c0_g1_2194_TPlot.pdf
TRINITY_DN6511_c0_g1:2196	si_s606	TRINITY_DN6511_c0_g1	2188	2205	2196	-28.20	-19.20	0.680851063829787	8	2-14,2204-2192;18-20,2191-2189	1-1,2205-2205[UP5];15-17,x-x[BULq];21-21,2188-2188[UP3]	.(((---(((((((((((((.&.)))))))))))))...))).	CGGA---GGAGGAGAUUCGCG&AGCGAAUCUUUUUUAAAUCCA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN6511_c0_g1_2196_TPlot.pdf
TRINITY_DN6511_c0_g1:2197	si_s605	TRINITY_DN6511_c0_g1	2189	2206	2197	-27.50	-18.80	0.683636363636364	9	3-15,2204-2192;19-21,2191-2189	1-2,2206-2205[UP5];16-18,x-x[BULq]	(((---(((((((((((((..&..)))))))))))))...)))	GGA---GGAGGAGAUUCGCGC&AAGCGAAUCUUUUUUAAAUCC	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN6511_c0_g1_2197_TPlot.pdf
TRINITY_DN6513_c0_g1:4333	si_s46	TRINITY_DN6513_c0_g1	4322	4342	4333	-25.00	-16.50	0.66	14.5	6-20,4337-4323	1-5,4342-4338[UP5];21-21,4322-4322[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGGCUUGGAGUUCAGUCACGA&UAAUAAUUGGAUUUCAAGUUA	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN6513_c0_g1_4333_TPlot.pdf
TRINITY_DN6513_c0_g1:918	si_s626	TRINITY_DN6513_c0_g1	905	927	918	-36.10	-25.00	0.692520775623269	8	2-10,926-918;11-14,915-912;16-21,910-905	1-1,927-927[UP5];x-x,917-916[BULt];15-15,911-911[SIL]	((((((.((((..(((((((((.&.)))))))))--)))).))))))	ACGCCUCCGGAAUAAGAUUGCUG&AAGCGAUCUU--UUCGUAGGCGU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN6513_c0_g1_918_TPlot.pdf
TRINITY_DN6515_c0_g1:2138	si_s527	TRINITY_DN6515_c0_g1	2122	2148	2138	-28.00	-18.60	0.664285714285714	10	1-9,2148-2140;10-16,2138-2132;17-21,2126-2122	x-x,2139-2139[BULt];x-x,2131-2127[BULt]	(((((.....(((((((.(((((((((&)))))))))-)))))))-----)))))	GGAUCUCAUCGAAGAUGAAUUUCGGGU&AUUCGAAAU-CAUUUUU-----GAUCC	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN6515_c0_g1_2138_TPlot.pdf
TRINITY_DN6515_c0_g1:2140	si_s526	TRINITY_DN6515_c0_g1	2128	2149	2140	-25.60	-18.10	0.70703125	7	2-10,2148-2140;11-20,2138-2129	1-1,2149-2149[UP5];x-x,2139-2139[BULt];21-21,2128-2128[UP3]	.((((((((((.(((((((((.&.)))))))))-)))))))))).	CAUCGAAGAUGAAUUUCGGGUC&AAUUCGAAAU-CAUUUUUGAUC	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN6515_c0_g1_2140_TPlot.pdf
TRINITY_DN6515_c0_g1:2142	si_s524	TRINITY_DN6515_c0_g1	2130	2151	2142	-23.90	-17.00	0.711297071129707	10	4-12,2148-2140;13-21,2138-2130	1-3,2151-2149[UP5];x-x,2139-2139[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	UCGAAGAUGAAUUUCGGGUCUU&UUAAUUCGAAAU-CAUUUUUGA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN6515_c0_g1_2142_TPlot.pdf
TRINITY_DN65163_c0_g1:181	si_s437	TRINITY_DN65163_c0_g1	170	190	181	-19.70	-14.20	0.720812182741117	11.5	7-21,184-170	1-6,190-185[UP5]	(((((((((((((((......&......)))))))))))))))	UUAUGUAUAAUAUGUUUGAGA&AUAAUUACAUAUUAUAUAUAA	0	0.102878931741744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN65163_c0_g1_181_TPlot.pdf
TRINITY_DN65163_c0_g1:182	si_s436	TRINITY_DN65163_c0_g1	171	191	182	-19.60	-13.30	0.678571428571429	13.5	8-21,184-171	1-7,191-185[UP5]	((((((((((((((.......&.......))))))))))))))	UAUGUAUAAUAUGUUUGAGAC&AAUAAUUACAUAUUAUAUAUA	4	0.999957816069636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN65163_c0_g1_182_TPlot.pdf
TRINITY_DN6516_c0_g1:1323	si_s821	TRINITY_DN6516_c0_g1	1312	1332	1323	-22.20	-17.00	0.765765765765766	5.5	1-8,1332-1325;10-19,1323-1314	9-9,1324-1324[SIL];20-21,1313-1312[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UGGUUUUUCAUUUUUAGGAAG&UUUCUUAAUAAUGAAAAACAA	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN6516_c0_g1_1323_TPlot.pdf
TRINITY_DN6516_c0_g1:1383	si_s483	TRINITY_DN6516_c0_g1	1372	1392	1383	-21.40	-14.10	0.658878504672897	8	2-14,1391-1379	1-1,1392-1392[UP5];15-21,1378-1372[UP3]	.......(((((((((((((.&.))))))))))))).......	UCAUCCAAAAUAAAUAUAGGG&UCCUAUAUUUAUUUAAAUAUA	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s483_TRINITY_DN6516_c0_g1_1383_TPlot.pdf
TRINITY_DN6516_c0_g1:1599	si_a404	TRINITY_DN6516_c0_g1	1587	1608	1599	-21.70	-15.90	0.732718894009217	4.5	1-14,1608-1595;16-21,1592-1587	15-15,1594-1593[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	UGGAUGGGAAACAAAAUAAUUC&GAAUUGUUUUGUUU-AUAUUUA	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6516_c0_g1_1599_TPlot.pdf
TRINITY_DN6516_c0_g1:1600	si_a403	TRINITY_DN6516_c0_g1	1588	1609	1600	-22.00	-16.10	0.731818181818182	4.5	1-15,1609-1595;17-21,1592-1588	16-16,1594-1593[AILt]	(((((..(((((((((((((((&)))))))))))))))-.)))))	GGAUGGGAAACAAAAUAAUUCU&AGAAUUGUUUUGUUU-AUAUUU	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6516_c0_g1_1600_TPlot.pdf
TRINITY_DN6516_c0_g1:1601	si_a402	TRINITY_DN6516_c0_g1	1589	1610	1601	-22.40	-17.10	0.763392857142857	4	1-16,1610-1595;18-21,1592-1589	17-17,1594-1593[AILt]	((((..((((((((((((((((&))))))))))))))))-.))))	GAUGGGAAACAAAAUAAUUCUA&UAGAAUUGUUUUGUUU-AUAUU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN6516_c0_g1_1601_TPlot.pdf
TRINITY_DN6516_c0_g1:1602	si_a401	TRINITY_DN6516_c0_g1	1591	1611	1602	-22.60	-16.70	0.738938053097345	6	2-17,1610-1595	1-1,1611-1611[UP5];18-21,1594-1591[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGGGAAACAAAAUAAUUCUAA&AUAGAAUUGUUUUGUUUAUAU	0	0.0992811205885377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN6516_c0_g1_1602_TPlot.pdf
TRINITY_DN6516_c0_g1:1603	si_a400	TRINITY_DN6516_c0_g1	1592	1612	1603	-22.80	-16.70	0.732456140350877	7	3-18,1610-1595	1-2,1612-1611[UP5];19-21,1594-1592[UP3]	...((((((((((((((((..&..))))))))))))))))...	GGGAAACAAAAUAAUUCUAAU&UAUAGAAUUGUUUUGUUUAUA	2	0.936110413218895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN6516_c0_g1_1603_TPlot.pdf
TRINITY_DN6516_c0_g1:1604	si_a399	TRINITY_DN6516_c0_g1	1593	1613	1604	-22.60	-16.70	0.738938053097345	8	4-19,1610-1595	1-3,1613-1611[UP5];20-21,1594-1593[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGAAACAAAAUAAUUCUAAUC&AUAUAGAAUUGUUUUGUUUAU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN6516_c0_g1_1604_TPlot.pdf
TRINITY_DN6516_c0_g1:1605	si_a398	TRINITY_DN6516_c0_g1	1594	1614	1605	-22.40	-16.70	0.745535714285714	9	5-20,1610-1595	1-4,1614-1611[UP5];21-21,1594-1594[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAAACAAAAUAAUUCUAAUCU&AAUAUAGAAUUGUUUUGUUUA	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN6516_c0_g1_1605_TPlot.pdf
TRINITY_DN6518_c0_g1:103	si_s256	TRINITY_DN6518_c0_g1	92	112	103	-29.30	-19.30	0.658703071672355	9	2-3,111-110;5-18,108-95	1-1,112-112[UP5];4-4,109-109[SIL];19-21,94-92[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	AUAUUGAGUGGUGUAUCUGGC&UCCCGAUAUAUUACUCAAAAA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s256_TRINITY_DN6518_c0_g1_103_TPlot.pdf
TRINITY_DN6518_c0_g1:1177	si_a148	TRINITY_DN6518_c0_g1	1166	1186	1177	-30.30	-20.50	0.676567656765677	10	1-10,1186-1177;13-19,1174-1168	11-12,1176-1175[SIL];20-21,1167-1166[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	UAGACCUUACUAUGACGAUGA&UCGUUGUUGUUUUAAGGUCAA	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN6518_c0_g1_1177_TPlot.pdf
TRINITY_DN6518_c0_g1:1180	si_a145	TRINITY_DN6518_c0_g1	1169	1189	1180	-28.10	-18.40	0.654804270462633	9	3-13,1187-1177;16-21,1174-1169	1-2,1189-1188[UP5];14-15,1176-1175[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	ACCUUACUAUGACGAUGAUGA&UAAUCGUUGUUGUUUUAAGGU	3	0.999999340269439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN6518_c0_g1_1180_TPlot.pdf
TRINITY_DN6518_c0_g1:1233	si_s91	TRINITY_DN6518_c0_g1	1222	1243	1233	-34.70	-22.80	0.657060518731988	6.5	2-9,1242-1235;10-18,1233-1225	1-1,1243-1243[UP5];x-x,1234-1234[BULt];19-21,1224-1222[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	GAAGAAGUGAAGCAAGAAGAAG&UUUCUUCUU-CUUCGCUUCGGA	2	0.999999999876378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6518_c0_g1_1233_TPlot.pdf
TRINITY_DN6518_c0_g1:1235	si_s90	TRINITY_DN6518_c0_g1	1223	1244	1235	-35.30	-23.40	0.662889518413598	6.5	2-10,1243-1235;11-19,1233-1225	1-1,1244-1244[UP5];x-x,1234-1234[BULt];20-21,1224-1223[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	AAGAAGUGAAGCAAGAAGAAGA&CUUUCUUCUU-CUUCGCUUCGG	2	0.999999997154028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6518_c0_g1_1235_TPlot.pdf
TRINITY_DN6518_c0_g1:1236	si_s89	TRINITY_DN6518_c0_g1	1224	1245	1236	-35.30	-23.40	0.662889518413598	7.5	3-11,1243-1235;12-20,1233-1225	1-2,1245-1244[UP5];x-x,1234-1234[BULt];21-21,1224-1224[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	AGAAGUGAAGCAAGAAGAAGAA&CCUUUCUUCUU-CUUCGCUUCG	2	0.999999999267085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6518_c0_g1_1236_TPlot.pdf
TRINITY_DN6518_c0_g1:1237	si_s88	TRINITY_DN6518_c0_g1	1225	1246	1237	-34.80	-23.00	0.660919540229885	8.5	4-12,1243-1235;13-21,1233-1225	1-3,1246-1244[UP5];x-x,1234-1234[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GAAGUGAAGCAAGAAGAAGAAG&UCCUUUCUUCUU-CUUCGCUUC	2	0.999999999968558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6518_c0_g1_1237_TPlot.pdf
TRINITY_DN6518_c0_g1:1975	si_s77	TRINITY_DN6518_c0_g1	1961	1984	1975	-25.50	-17.30	0.67843137254902	13	1-4,1984-1981;6-10,1979-1975;11-21,1971-1961	5-5,1980-1980[SIL];x-x,1974-1972[BULt]	(((((((((((...(((((.((((&)))).)))))---)))))))))))	GAAGAAAGGGAAAUAGAGGUGGAA&UUUUUUUUCU---UUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6518_c0_g1_1975_TPlot.pdf
TRINITY_DN6518_c0_g1:3086	si_s896	TRINITY_DN6518_c0_g1	3072	3095	3086	-31.60	-22.00	0.69620253164557	8	3-14,3093-3082;15-21,3078-3072	1-2,3095-3094[UP5];x-x,3081-3079[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	UGAAAUUCAAGAAGGGAAAGCUAA&UAGGCUUUCUCUUC---AAUUUCA	2	0.95546755294484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN6518_c0_g1_3086_TPlot.pdf
TRINITY_DN6518_c0_g1:3087	si_s895	TRINITY_DN6518_c0_g1	3073	3096	3087	-31.10	-20.50	0.659163987138264	10	4-15,3093-3082;16-21,3078-3073	1-3,3096-3094[UP5];x-x,3081-3079[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	GAAAUUCAAGAAGGGAAAGCUAAU&AUAGGCUUUCUCUUC---AAUUUC	2	0.999520101235378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN6518_c0_g1_3087_TPlot.pdf
TRINITY_DN6518_c0_g1:99	si_s260	TRINITY_DN6518_c0_g1	88	108	99	-24.10	-17.00	0.705394190871369	10	1-14,108-95	15-21,94-88[UP3]	.......((((((((((((((&)))))))))))))).......	AUUUAUAUUGAGUGGUGUAUC&GAUAUAUUACUCAAAAAAAUC	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN6518_c0_g1_99_TPlot.pdf
TRINITY_DN6519_c0_g1:667	si_s703	TRINITY_DN6519_c0_g1	651	676	667	-32.80	-21.40	0.652439024390244	10.5	1-14,676-663;17-21,655-651	15-16,662-656[AILt]	(((((.......((((((((((((((&))))))))))))))-----..)))))	UCCUGGUUUUGGCACUGAUGAAUUGA&UCGAUUUAUUAGUG-----AACAGGG	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s703_TRINITY_DN6519_c0_g1_667_TPlot.pdf
TRINITY_DN6519_c0_g1:758	si_s550	TRINITY_DN6519_c0_g1	747	766	758	-20.30	-13.40	0.660098522167488	7.5	1-2,766-765;5-21,763-747	3-4,764-764[AILq]	(((((((((((((((((.-((&))..)))))))))))))))))	AAAGUAUUAGUUUUGUUG-GA&UCAAAAUAGAAUUAAUAUUUU	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN6519_c0_g1_758_TPlot.pdf
TRINITY_DN6528_c0_g1:1150	si_a760	TRINITY_DN6528_c0_g1	1139	1159	1150	-31.10	-22.60	0.726688102893891	4.5	1-18,1159-1142	19-21,1141-1139[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAAAAUUAAAAAUCCAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN6528_c0_g1_1150_TPlot.pdf
TRINITY_DN6528_c0_g1:1152	si_a758	TRINITY_DN6528_c0_g1	1141	1161	1152	-34.00	-22.80	0.670588235294118	5.5	3-20,1159-1142	1-2,1161-1160[UP5];21-21,1141-1141[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AAAUUAAAAAUCCAAAGGAAG&CCUCCUUUGGGUUUUUGAUUG	2	0.999543407832817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6528_c0_g1_1152_TPlot.pdf
TRINITY_DN6528_c0_g1:1682	si_s65	TRINITY_DN6528_c0_g1	1671	1691	1682	-26.00	-18.30	0.703846153846154	6	3-15,1689-1677;17-20,1675-1672	1-2,1691-1690[UP5];16-16,1676-1676[SIL];21-21,1671-1671[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	CAAAGCAAGUAGAAGUUGCAG&UAGCAACUUCUAUUUUUUUUC	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN6528_c0_g1_1682_TPlot.pdf
TRINITY_DN6528_c0_g1:1684	si_s63	TRINITY_DN6528_c0_g1	1673	1692	1684	-25.80	-19.10	0.74031007751938	7.5	1-3,1692-1690;5-17,1689-1677	4-4,x-x[BULq];18-21,1676-1673[UP3]	....(((((((((((((-(((&))).)))))))))))))....	AAGCAAGUAGAAGUUGC-AGC&GUUAGCAACUUCUAUUUUUUU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN6528_c0_g1_1684_TPlot.pdf
TRINITY_DN6528_c0_g1:804	si_s87	TRINITY_DN6528_c0_g1	791	813	804	-32.90	-23.20	0.70516717325228	7	2-16,812-798;17-18,796-795;19-19,793-793	1-1,813-813[UP5];x-x,797-797[BULt];x-x,794-794[BULt];20-21,792-791[UP3]	..(.((.(((((((((((((((.&.)))))))))))))))-))-)..	UCGUCGAAAGAAGGAGAAGGGAU&UUCCUUUCUUCUUCUU-CG-CUU	4	0.999999999840997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6528_c0_g1_804_TPlot.pdf
TRINITY_DN6528_c0_g1:806	si_s85	TRINITY_DN6528_c0_g1	793	815	806	-33.80	-22.90	0.677514792899408	9	4-18,812-798;19-20,796-795;21-21,793-793	1-3,815-813[UP5];x-x,797-797[BULt];x-x,794-794[BULt]	(.((.(((((((((((((((...&...)))))))))))))))-))-)	GUCGAAAGAAGGAGAAGGGAUAA&CUUUCCUUUCUUCUUCUU-CG-C	4	0.999999999999762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6528_c0_g1_806_TPlot.pdf
TRINITY_DN65294_c0_g1:203	si_s774	TRINITY_DN65294_c0_g1	192	212	203	-24.70	-18.20	0.736842105263158	11	5-19,208-194	1-4,212-209[UP5];20-21,193-192[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCUUUAUAGCAGUAGUGUUAA&UAAUUACUAUUGCUAUAAAAC	1	0.0112702197588788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN65294_c0_g1_203_TPlot.pdf
TRINITY_DN652_c0_g1:2647	si_a446	TRINITY_DN652_c0_g1	2638	2656	2647	-25.50	-17.00	0.666666666666667	5.5	1-13,2656-2644;16-20,2643-2639	14-15,x-x[BULq];21-21,2638-2638[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	CUAGCA--AAUUGUCUCAUGU&AUAUGAGAUAAUUGUUGUUAU	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN652_c0_g1_2647_TPlot.pdf
TRINITY_DN65304_c0_g1:14	si_s71	TRINITY_DN65304_c0_g1	2	23	14	-25.70	-19.00	0.739299610894942	8	1-15,23-9;18-21,5-2	16-17,8-6[AILt]	((((...(((((((((((((((&)))))))))))))))-..))))	GGGAUUUGGAAAGGGAUAGGAG&CUUCUAUUUUUUUUC-UUUCCU	4	0.999999971713079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN65304_c0_g1_14_TPlot.pdf
TRINITY_DN6531_c0_g1:879	si_a471	TRINITY_DN6531_c0_g1	868	888	879	-21.10	-14.50	0.687203791469194	11	4-17,885-872	1-3,888-886[UP5];18-21,871-868[UP3]	....((((((((((((((...&...))))))))))))))....	GCCAAACAAUAGUUGCAUUUU&AAUAUGUAAUUAUUGUUAUAU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6531_c0_g1_879_TPlot.pdf
TRINITY_DN6532_c0_g2:2067	si_s11	TRINITY_DN6532_c0_g2	2056	2076	2067	-23.60	-15.80	0.669491525423729	6	3-13,2074-2064;15-20,2062-2057	1-2,2076-2075[UP5];14-14,2063-2063[SIL];21-21,2056-2056[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	UUCAAUAAAGUGAUAAUAAAG&ACUUAUUAUUACUAUAUUGAU	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN6532_c0_g2_2067_TPlot.pdf
TRINITY_DN6532_c0_g2:2068	si_s10	TRINITY_DN6532_c0_g2	2057	2077	2068	-23.80	-15.70	0.659663865546218	7	4-14,2074-2064;16-21,2062-2057	1-3,2077-2075[UP5];15-15,2063-2063[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UCAAUAAAGUGAUAAUAAAGA&UACUUAUUAUUACUAUAUUGA	2	0.968571161233685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN6532_c0_g2_2068_TPlot.pdf
TRINITY_DN6534_c0_g1:4077	si_s806	TRINITY_DN6534_c0_g1	4066	4091	4077	-28.60	-19.30	0.674825174825175	13.5	1-6,4091-4086;7-9,4080-4078;11-21,4076-4066	x-x,4085-4081[BULt];10-10,4077-4077[SIL]	(((((((((((.(((.....((((((&))))))-----))).)))))))))))	GGGAAAGGGUAUCGAUUGGGAGAUAA&UUAUCU-----UCGUUACCUUUUCUU	3	0.999999997811836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6534_c0_g1_4077_TPlot.pdf
TRINITY_DN6534_c0_g1:4094	si_a550	TRINITY_DN6534_c0_g1	4083	4103	4094	-30.90	-23.60	0.763754045307443	9	6-21,4098-4083	1-5,4103-4099[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGAGAUAAAGAAAUAAAAAU&CAAUCUAUUUCUUUAUCUCCC	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN6534_c0_g1_4094_TPlot.pdf
TRINITY_DN6534_c0_g1:4677	si_s85	TRINITY_DN6534_c0_g1	4667	4686	4677	-33.80	-23.80	0.70414201183432	6	1-6,4686-4681;8-11,4679-4676;13-20,4675-4668	7-7,4680-4680[SIL];12-12,x-x[BULq];21-21,4667-4667[UP3]	.((((((((-((((.((((((&)))))).)))).)))))))).	CCGAAGAAG-AGAAUGGAGAG&CUUUCCUUUCUUCUUCUUCGC	2	0.999946319329673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6534_c0_g1_4677_TPlot.pdf
TRINITY_DN6534_c0_g1:4678	si_s84	TRINITY_DN6534_c0_g1	4668	4687	4678	-32.30	-25.20	0.780185758513932	4	1-7,4687-4681;9-12,4679-4676;14-21,4675-4668	8-8,4680-4680[SIL];13-13,x-x[BULq]	((((((((-((((.(((((((&))))))).)))).))))))))	CGAAGAAG-AGAAUGGAGAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6534_c0_g1_4678_TPlot.pdf
TRINITY_DN65354_c0_g1:167	si_a547	TRINITY_DN65354_c0_g1	156	175	167	-26.90	-19.70	0.732342007434944	5	1-5,175-171;7-11,170-166;13-20,164-157	6-6,x-x[BULq];12-12,165-165[SIL];21-21,156-156[UP3]	.((((((((.(((((-(((((&))))).))))).)))))))).	CGAUAAAGACAUAGA-UGAAC&GUUCAAUCUAUUUCUUUAUCU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN65354_c0_g1_167_TPlot.pdf
TRINITY_DN6535_c0_g2:99	si_a211	TRINITY_DN6535_c0_g2	89	108	99	-26.50	-18.10	0.683018867924528	5	2-16,107-93;18-20,92-90	1-1,108-108[UP5];17-17,x-x[BULq];21-21,89-89[UP3]	.(((-(((((((((((((((.&.))))))))))))))).))).	UUGA-UUUAAUUGGUCGGUUC&AAAUCGACUAAUUAAACUCAU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a211_TRINITY_DN6535_c0_g2_99_TPlot.pdf
TRINITY_DN6539_c0_g1:605	si_a875	TRINITY_DN6539_c0_g1	594	614	605	-27.10	-18.20	0.671586715867159	7	1-3,614-612;5-18,610-597	4-4,611-611[SIL];19-21,596-594[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UUAUGAUUGCAAUUGAACCUU&AAGAUUUAGUUGCAAUCAAUA	2	0.921055828159047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN6539_c0_g1_605_TPlot.pdf
TRINITY_DN653_c0_g1:136	si_s806	TRINITY_DN653_c0_g1	125	145	136	-28.60	-18.80	0.657342657342657	4.5	1-12,145-134;15-21,131-125	13-14,133-132[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GGGAGAAAAUAACGGAGAUAA&UUAUCUUCGUUACCUUUUCUU	3	0.999999999999922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN653_c0_g1_136_TPlot.pdf
TRINITY_DN653_c0_g1:137	si_s805	TRINITY_DN653_c0_g1	126	146	137	-28.60	-18.70	0.653846153846154	5	2-13,145-134;16-21,131-126	1-1,146-146[UP5];14-15,133-132[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GGAGAAAAUAACGGAGAUAAU&UUUAUCUUCGUUACCUUUUCU	3	0.999999999999802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN653_c0_g1_137_TPlot.pdf
TRINITY_DN653_c0_g3:18	si_s91	TRINITY_DN653_c0_g3	2	27	18	-34.70	-22.80	0.657060518731988	8	1-13,27-15;14-18,9-5	x-x,14-10[BULt];19-21,4-2[UP3]	...(((((.....(((((((((((((&)))))))))))))-----)))))...	ACAGAAGCAAAAAGAAGAAGAAGAAA&UUUCUUCUUCUUC-----GCUUCGGA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN653_c0_g3_18_TPlot.pdf
TRINITY_DN653_c0_g3:19	si_s90	TRINITY_DN653_c0_g3	3	28	19	-35.30	-26.00	0.736543909348442	7	1-14,28-15;15-19,9-5	x-x,14-10[BULt];20-21,4-3[UP3]	..(((((.....((((((((((((((&))))))))))))))-----)))))..	CAGAAGCAAAAAGAAGAAGAAGAAAG&CUUUCUUCUUCUUC-----GCUUCGG	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN653_c0_g3_19_TPlot.pdf
TRINITY_DN653_c0_g3:20	si_s89	TRINITY_DN653_c0_g3	4	29	20	-35.30	-29.00	0.821529745042493	6	1-15,29-15;16-20,9-5	x-x,14-10[BULt];21-21,4-4[UP3]	.(((((.....(((((((((((((((&)))))))))))))))-----))))).	AGAAGCAAAAAGAAGAAGAAGAAAGG&CCUUUCUUCUUCUUC-----GCUUCG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN653_c0_g3_20_TPlot.pdf
TRINITY_DN653_c0_g3:22	si_s87	TRINITY_DN653_c0_g3	6	31	22	-32.90	-27.90	0.848024316109423	5	1-17,31-15;18-21,9-6	x-x,14-10[BULt]	((((.....(((((((((((((((((&)))))))))))))))))-----))))	AAGCAAAAAGAAGAAGAAGAAAGGAA&UUCCUUUCUUCUUCUUC-----GCUU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN653_c0_g3_22_TPlot.pdf
TRINITY_DN653_c0_g3:23	si_s86	TRINITY_DN653_c0_g3	7	32	23	-32.90	-27.90	0.848024316109423	5	1-18,32-15;19-21,9-7	x-x,14-10[BULt]	(((.....((((((((((((((((((&))))))))))))))))))-----)))	AGCAAAAAGAAGAAGAAGAAAGGAAA&UUUCCUUUCUUCUUCUUC-----GCU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN653_c0_g3_23_TPlot.pdf
TRINITY_DN653_c0_g3:24	si_s85	TRINITY_DN653_c0_g3	13	33	24	-33.80	-27.80	0.822485207100592	3	2-19,32-15	1-1,33-33[UP5];20-21,14-13[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	AAGAAGAAGAAGAAAGGAAAA&CUUUCCUUUCUUCUUCUUCGC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN653_c0_g3_24_TPlot.pdf
TRINITY_DN653_c0_g3:25	si_s84	TRINITY_DN653_c0_g3	14	34	25	-32.30	-27.80	0.860681114551084	4	3-20,32-15	1-2,34-33[UP5];21-21,14-14[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGAAGAAGAAGAAAGGAAAAA&UCUUUCCUUUCUUCUUCUUCG	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN653_c0_g3_25_TPlot.pdf
TRINITY_DN653_c0_g3:26	si_s83	TRINITY_DN653_c0_g3	15	37	26	-30.90	-27.90	0.902912621359223	4	1-5,37-33;6-21,30-15	x-x,32-31[BULt]	((((((((((((((((..(((((&)))))--))))))))))))))))	GAAGAAGAAGAAAGGAAAAAGAA&UUCUU--UCCUUUCUUCUUCUUC	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN653_c0_g3_26_TPlot.pdf
TRINITY_DN653_c0_g3:27	si_s82	TRINITY_DN653_c0_g3	16	38	27	-28.90	-25.60	0.885813148788927	4	1-6,38-33;7-21,30-16	x-x,32-31[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	AAGAAGAAGAAAGGAAAAAGAAA&UUUCUU--UCCUUUCUUCUUCUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN653_c0_g3_27_TPlot.pdf
TRINITY_DN653_c0_g3:28	si_s81	TRINITY_DN653_c0_g3	17	39	28	-28.90	-24.90	0.86159169550173	5	2-7,38-33;8-21,30-17	1-1,39-39[UP5];x-x,32-31[BULt]	((((((((((((((..((((((.&.))))))--))))))))))))))	AGAAGAAGAAAGGAAAAAGAAAG&UUUUCUU--UCCUUUCUUCUUCU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN653_c0_g3_28_TPlot.pdf
TRINITY_DN653_c0_g3:29	si_s80	TRINITY_DN653_c0_g3	18	40	29	-28.20	-25.30	0.897163120567376	5	1-8,40-33;9-21,30-18	x-x,32-31[BULt]	(((((((((((((..((((((((&))))))))--)))))))))))))	GAAGAAGAAAGGAAAAAGAAAGA&UUUUUCUU--UCCUUUCUUCUUC	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN653_c0_g3_29_TPlot.pdf
TRINITY_DN653_c0_g3:30	si_s79	TRINITY_DN653_c0_g3	19	41	30	-26.20	-22.50	0.858778625954199	5.5	1-9,41-33;10-21,30-19	x-x,32-31[BULt]	((((((((((((..(((((((((&)))))))))--))))))))))))	AAGAAGAAAGGAAAAAGAAAGAG&UUUUUUCUU--UCCUUUCUUCUU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN653_c0_g3_30_TPlot.pdf
TRINITY_DN653_c0_g3:32	si_s77	TRINITY_DN653_c0_g3	21	41	32	-25.50	-20.50	0.803921568627451	4.5	1-8,41-34;10-21,32-21	9-9,33-33[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	GAAGAAAGGAAAAAGAAAGAG&UUUUUUUUCUUUCCUUUCUUC	2	0.999116901745928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN653_c0_g3_32_TPlot.pdf
TRINITY_DN653_c0_g3:33	si_s78	TRINITY_DN653_c0_g3	20	42	33	-26.20	-21.70	0.82824427480916	7	2-10,41-33;11-21,30-20	1-1,42-42[UP5];x-x,32-31[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	AGAAGAAAGGAAAAAGAAAGAGC&UUUUUUUCUU--UCCUUUCUUCU	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN653_c0_g3_33_TPlot.pdf
TRINITY_DN653_c0_g3:34	si_s75	TRINITY_DN653_c0_g3	23	43	34	-24.00	-16.40	0.683333333333333	8	3-10,41-34;12-21,32-23	1-2,43-42[UP5];11-11,33-33[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AGAAAGGAAAAAGAAAGAGCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN653_c0_g3_34_TPlot.pdf
TRINITY_DN653_c0_g3:35	si_s74	TRINITY_DN653_c0_g3	24	44	35	-25.00	-16.60	0.664	7	1-2,44-43;4-11,41-34;13-21,32-24	3-3,42-42[SIL];12-12,33-33[SIL]	(((((((((.((((((((.((&)).)))))))).)))))))))	GAAAGGAAAAAGAAAGAGCAG&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN653_c0_g3_35_TPlot.pdf
TRINITY_DN653_c1_g1:414	si_s811	TRINITY_DN653_c1_g1	403	424	414	-26.40	-17.40	0.659090909090909	9	1-9,424-416;11-16,413-408	10-10,415-414[AILt];17-21,407-403[UP3]	.....((((((..(((((((((&)))))))))-.)))))).....	CAAUGAAGAAACUGGUAACGAA&UUCGUUACC-UUUUCUUAAUAA	3	0.999999964244092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN653_c1_g1_414_TPlot.pdf
TRINITY_DN65453_c0_g1:159	si_a783	TRINITY_DN65453_c0_g1	145	168	159	-24.70	-16.40	0.663967611336032	5.5	1-8,168-161;10-14,159-155;15-21,151-145	9-9,160-160[SIL];x-x,154-152[BULt]	(((((((...(((((.((((((((&)))))))).)))))---)))))))	GAAUAGACAGAAAAUUGAAGAGUU&AACUCUUCUAUUUU---UCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN65453_c0_g1_159_TPlot.pdf
TRINITY_DN6545_c0_g1:1015	si_a419	TRINITY_DN6545_c0_g1	1004	1024	1015	-23.00	-15.00	0.652173913043478	3.5	1-19,1024-1006	20-21,1005-1004[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUUUUGUAUUUAUUUAAAUA&UAUUUAAAUAAAUAUAGGAUC	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN6545_c0_g1_1015_TPlot.pdf
TRINITY_DN6545_c0_g1:1016	si_a418	TRINITY_DN6545_c0_g1	1005	1025	1016	-21.20	-16.00	0.754716981132076	2.5	1-20,1025-1006	21-21,1005-1005[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UUUUUGUAUUUAUUUAAAUAU&AUAUUUAAAUAAAUAUAGGAU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN6545_c0_g1_1016_TPlot.pdf
TRINITY_DN6545_c0_g1:1017	si_a417	TRINITY_DN6545_c0_g1	1006	1026	1017	-21.40	-15.90	0.742990654205608	2.5	2-21,1025-1006	1-1,1026-1026[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	UUUUGUAUUUAUUUAAAUAUU&UAUAUUUAAAUAAAUAUAGGA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN6545_c0_g1_1017_TPlot.pdf
TRINITY_DN6545_c0_g1:1018	si_a416	TRINITY_DN6545_c0_g1	1007	1027	1018	-20.50	-14.50	0.707317073170732	4.5	3-21,1025-1007	1-2,1027-1026[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUUGUAUUUAUUUAAAUAUUU&UUAUAUUUAAAUAAAUAUAGG	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN6545_c0_g1_1018_TPlot.pdf
TRINITY_DN6545_c0_g1:1019	si_a415	TRINITY_DN6545_c0_g1	1008	1028	1019	-18.10	-14.00	0.773480662983425	6	4-21,1025-1008	1-3,1028-1026[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUGUAUUUAUUUAAAUAUUUA&UUUAUAUUUAAAUAAAUAUAG	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN6545_c0_g1_1019_TPlot.pdf
TRINITY_DN6545_c0_g1:1020	si_a414	TRINITY_DN6545_c0_g1	1009	1029	1020	-18.10	-16.00	0.883977900552486	4.5	1-2,1029-1028;5-21,1025-1009	3-4,1027-1026[SIL]	(((((((((((((((((..((&))..)))))))))))))))))	UGUAUUUAUUUAAAUAUUUAC&GUUUAUAUUUAAAUAAAUAUA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN6545_c0_g1_1020_TPlot.pdf
TRINITY_DN6545_c0_g1:1021	si_a413	TRINITY_DN6545_c0_g1	1010	1030	1021	-18.40	-15.80	0.858695652173913	4.5	1-3,1030-1028;6-21,1025-1010	4-5,1027-1026[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	GUAUUUAUUUAAAUAUUUACA&UGUUUAUAUUUAAAUAAAUAU	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN6545_c0_g1_1021_TPlot.pdf
TRINITY_DN6545_c0_g1:1022	si_a412	TRINITY_DN6545_c0_g1	1011	1031	1022	-18.30	-15.20	0.830601092896175	4	1-4,1031-1028;7-21,1025-1011	5-6,1027-1026[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	UAUUUAUUUAAAUAUUUACAA&UUGUUUAUAUUUAAAUAAAUA	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN6545_c0_g1_1022_TPlot.pdf
TRINITY_DN6545_c0_g1:1023	si_a411	TRINITY_DN6545_c0_g1	1012	1032	1023	-17.90	-14.00	0.782122905027933	5	2-5,1031-1028;8-21,1025-1012	1-1,1032-1032[UP5];6-7,1027-1026[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	AUUUAUUUAAAUAUUUACAAU&UUUGUUUAUAUUUAAAUAAAU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN6545_c0_g1_1023_TPlot.pdf
TRINITY_DN6545_c0_g1:1024	si_a410	TRINITY_DN6545_c0_g1	1013	1033	1024	-17.80	-13.00	0.730337078651685	7	3-6,1031-1028;9-21,1025-1013	1-2,1033-1032[UP5];7-8,1027-1026[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	UUUAUUUAAAUAUUUACAAUA&UUUUGUUUAUAUUUAAAUAAA	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6545_c0_g1_1024_TPlot.pdf
TRINITY_DN6546_c0_g1:1428	si_a493	TRINITY_DN6546_c0_g1	1417	1437	1428	-29.50	-21.10	0.715254237288136	7	3-16,1435-1422;18-21,1420-1417	1-2,1437-1436[UP5];17-17,1421-1421[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AAGAGGAAAAAUGGCGUAUCG&GAAUAUGUCGUUUUUCGUCUU	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN6546_c0_g1_1428_TPlot.pdf
TRINITY_DN6546_c0_g1:1429	si_a492	TRINITY_DN6546_c0_g1	1418	1438	1429	-30.20	-20.20	0.66887417218543	9	4-17,1435-1422;19-21,1420-1418	1-3,1438-1436[UP5];18-18,1421-1421[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	AGAGGAAAAAUGGCGUAUCGA&AGAAUAUGUCGUUUUUCGUCU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN6546_c0_g1_1429_TPlot.pdf
TRINITY_DN654_c0_g1:791	si_s884	TRINITY_DN654_c0_g1	779	800	791	-26.30	-17.20	0.653992395437262	6.5	3-13,798-788;14-20,786-780	1-2,800-799[UP5];x-x,787-787[BULt];21-21,779-779[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UGAAGCCUAAUUUGUUUUUAAU&ACUAAAAAUAAAU-AGGCUUUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s884_TRINITY_DN654_c0_g1_791_TPlot.pdf
TRINITY_DN6550_c0_g2:388	si_s485	TRINITY_DN6550_c0_g2	377	397	388	-18.10	-12.10	0.668508287292818	8.5	5-20,393-378	1-4,397-394[UP5];21-21,377-377[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUUAUGUUUAAAUAAAUCUGC&CUAUAUUUAUUUAAAUAUAAA	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN6550_c0_g2_388_TPlot.pdf
TRINITY_DN65510_c0_g1:148	si_a453	TRINITY_DN65510_c0_g1	137	157	148	-21.10	-13.90	0.658767772511848	8	1-3,157-155;5-18,153-140	4-4,154-154[SIL];19-21,139-137[UP3]	...((((((((((((((.(((&))).))))))))))))))...	CCAAUGUGUGACAAUAAAUAU&AUAAUUGUUGUUAUAUAUAAU	4	0.999999997766903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN65510_c0_g1_148_TPlot.pdf
TRINITY_DN65531_c0_g1:471	si_a401	TRINITY_DN65531_c0_g1	460	480	471	-22.60	-16.20	0.716814159292035	9.5	4-19,477-462	1-3,480-478[UP5];20-21,461-460[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAGUAAACAAAAUGAUUCACA&AUAGAAUUGUUUUGUUUAUAU	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN65531_c0_g1_471_TPlot.pdf
TRINITY_DN65533_c0_g1:1292	si_s872	TRINITY_DN65533_c0_g1	1281	1301	1292	-30.70	-20.10	0.654723127035831	11	1-11,1301-1291;13-14,1289-1288	12-12,1290-1290[SIL];15-21,1287-1281[UP3]	.......((.(((((((((((&))))))))))).)).......	AGCGUGUGUACUGAGGCCGGU&ACCGGUCUUAGAACUAAAAAU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN65533_c0_g1_1292_TPlot.pdf
TRINITY_DN65547_c0_g1:1121	si_s633	TRINITY_DN65547_c0_g1	1110	1132	1121	-37.90	-25.70	0.678100263852243	12	1-6,1132-1127;7-8,1125-1124;10-19,1121-1112	x-x,1126-1126[BULt];9-9,1123-1122[AILt];20-21,1111-1110[UP3]	..((((((((((..((.((((((&))))))-))-.))))))))))..	ACGGCGAGCGCCCGGCUGGAGAG&CUUUUC-GU-AGGCGUUUGCCCU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN65547_c0_g1_1121_TPlot.pdf
TRINITY_DN65547_c0_g1:1449	si_a795	TRINITY_DN65547_c0_g1	1438	1458	1449	-30.20	-21.40	0.708609271523179	10.5	4-9,1455-1450;11-21,1448-1438	1-3,1458-1456[UP5];10-10,1449-1449[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	CUUUGGAUUGGUGGAUGGUCG&UUUCUAUUUUCCAAUCCGAAG	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN65547_c0_g1_1449_TPlot.pdf
TRINITY_DN65547_c0_g1:1450	si_a794	TRINITY_DN65547_c0_g1	1439	1459	1450	-28.60	-18.80	0.657342657342657	12.5	5-10,1455-1450;12-21,1448-1439	1-4,1459-1456[UP5];11-11,1449-1449[SIL]	((((((((((.((((((....&....)))))).))))))))))	UUUGGAUUGGUGGAUGGUCGG&UUUUCUAUUUUCCAAUCCGAA	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN65547_c0_g1_1450_TPlot.pdf
TRINITY_DN65547_c0_g1:709	si_a759	TRINITY_DN65547_c0_g1	693	718	709	-32.60	-21.70	0.665644171779141	11	1-8,718-711;10-15,709-704;16-21,698-693	9-9,710-710[SIL];x-x,703-699[BULt]	((((((.....((((((.((((((((&)))))))).))))))-----))))))	UCGAUCCCUGCAAGGACGCGGAGGAG&CUCCUUUGGGUUUUU-----GAUUGA	3	0.999998604714447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN65547_c0_g1_709_TPlot.pdf
TRINITY_DN65547_c0_g1:996	si_a565	TRINITY_DN65547_c0_g1	985	1007	996	-37.40	-25.50	0.681818181818182	10.5	1-9,1007-999;10-16,996-990	x-x,998-997[BULt];17-21,989-985[UP3]	.....(((((((..(((((((((&)))))))))--))))))).....	GUCGGACGAUUCCUGCGGGGAGG&UCUCCCCGU--GAAUCGUAUGUU	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN65547_c0_g1_996_TPlot.pdf
TRINITY_DN65548_c0_g1:2211	si_s8	TRINITY_DN65548_c0_g1	2201	2220	2211	-21.30	-14.60	0.685446009389671	5.5	1-8,2220-2213;10-15,2211-2206;17-21,2205-2201	9-9,2212-2212[SIL];16-16,x-x[BULq]	(((((-((((((.((((((((&)))))))).)))))).)))))	GAUAU-GUAGUAUUAAGUAGU&AUUACUUAUUAUUACUAUAUU	2	0.997259115352802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN65548_c0_g1_2211_TPlot.pdf
TRINITY_DN6555_c0_g1:2561	si_a169	TRINITY_DN6555_c0_g1	2551	2570	2561	-34.30	-22.50	0.65597667638484	7.5	2-11,2569-2560;13-15,2558-2556;17-20,2555-2552	1-1,2570-2570[UP5];12-12,2559-2559[SIL];16-16,x-x[BULq];21-21,2551-2551[UP3]	.((((-(((.((((((((((.&.)))))))))).))).)))).	GUAUC-AGGGGGGUGGGUAGC&UCUAUUCACCCGUCUAGAUAA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a169_TRINITY_DN6555_c0_g1_2561_TPlot.pdf
TRINITY_DN65569_c0_g1:1713	si_a497	TRINITY_DN65569_c0_g1	1702	1726	1713	-32.00	-21.76	0.68	17	3-8,1724-1719;11-21,1712-1702	1-2,1726-1725[UP5];9-10,1718-1713[AILt]	(((((((((((......((((((..&..))))))----..)))))))))))	AGGGAAGAUGAUGAUCUGACGACCA&AUGUCGUU----UUUCGUCUUCCUU	4	0.999999999998042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN65569_c0_g1_1713_TPlot.pdf
TRINITY_DN65571_c0_g1:1220	si_s95	TRINITY_DN65571_c0_g1	1208	1229	1220	-36.30	-23.90	0.658402203856749	12.5	5-16,1225-1214;17-21,1212-1208	1-4,1229-1226[UP5];x-x,1213-1213[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	CCGAUGCCGAGGUGGAGGUGCU&UUCUUCUUCGCUUCGG-AUUGG	4	0.99999805292576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN65571_c0_g1_1220_TPlot.pdf
TRINITY_DN65573_c0_g1:35	si_a261	TRINITY_DN65573_c0_g1	22	44	35	-40.60	-26.46	0.651724137931034	14.5	1-7,44-38;9-11,36-34;15-19,28-24	8-8,37-37[SIL];12-14,33-29[AILt];20-21,23-22[UP3]	..(((((.....(((.(((((((&))))))).)))--...)))))..	CCGGGCGGAGCGGCCGUCGGUGC&GUAUCGAGGGC--AAACGCCUAC	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a261_TRINITY_DN65573_c0_g1_35_TPlot.pdf
TRINITY_DN65573_c0_g1:37	si_a259	TRINITY_DN65573_c0_g1	24	46	37	-39.20	-27.46	0.700510204081633	10.5	2-9,45-38;11-13,36-34;17-21,28-24	1-1,46-46[UP5];10-10,37-37[SIL];14-16,33-29[AILt]	(((((.....(((.((((((((.&.)))))))).)))--...)))))	GGGCGGAGCGGCCGUCGGUGCAG&UUGUAUCGAGGGC--AAACGCCU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a259_TRINITY_DN65573_c0_g1_37_TPlot.pdf
TRINITY_DN65573_c0_g1:38	si_a258	TRINITY_DN65573_c0_g1	25	47	38	-38.60	-26.26	0.680310880829016	12	3-10,45-38;12-14,36-34;18-21,28-25	1-2,47-46[UP5];11-11,37-37[SIL];15-17,33-29[AILt]	((((.....(((.((((((((..&..)))))))).)))--...))))	GGCGGAGCGGCCGUCGGUGCAGA&AUUGUAUCGAGGGC--AAACGCC	0	0.0329643340461081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a258_TRINITY_DN65573_c0_g1_38_TPlot.pdf
TRINITY_DN65573_c0_g1:637	si_a530	TRINITY_DN65573_c0_g1	626	644	637	-43.70	-31.20	0.71395881006865	6	1-2,644-643;4-9,642-637;11-16,636-631;18-21,629-626	3-3,x-x[BULq];10-10,x-x[BULq];17-17,630-630[SIL]	((((.((((((-((((((-((&)).)))))).)))))).))))	GAGCGGGUCGC-CGCGUG-CC&GGACACGCGAGCGAUCGGUUC	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a530_TRINITY_DN65573_c0_g1_637_TPlot.pdf
TRINITY_DN65573_c0_g1:640	si_a526	TRINITY_DN65573_c0_g1	630	649	640	-45.60	-30.20	0.662280701754386	7.5	2-4,648-646;5-6,644-643;8-13,642-637;15-20,636-631	1-1,649-649[UP5];x-x,645-645[BULt];7-7,x-x[BULq];14-14,x-x[BULq];21-21,630-630[UP3]	.((((((-((((((-((.(((.&.)))-)).)))))).)))))).	GGGUCGC-CGCGUG-CCGGCCG&AGGC-GGACACGCGAGCGAUCG	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN65573_c0_g1_640_TPlot.pdf
TRINITY_DN65573_c0_g1:641	si_a525	TRINITY_DN65573_c0_g1	631	650	641	-44.10	-29.60	0.671201814058957	8.5	3-5,648-646;6-7,644-643;9-14,642-637;16-21,636-631	1-2,650-649[UP5];x-x,645-645[BULt];8-8,x-x[BULq];15-15,x-x[BULq]	((((((-((((((-((.(((..&..)))-)).)))))).))))))	GGUCGC-CGCGUG-CCGGCCGG&AAGGC-GGACACGCGAGCGAUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a525_TRINITY_DN65573_c0_g1_641_TPlot.pdf
TRINITY_DN65573_c0_g1:95	si_s85	TRINITY_DN65573_c0_g1	83	104	95	-33.80	-23.40	0.692307692307692	6	1-13,104-92;15-20,89-84	14-14,91-90[AILt];21-21,83-83[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	UUGAAGGCCGAAGAGGGGAAAG&CUUUCCUUUCUUC-UUCUUCGC	2	0.999998528744722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN65573_c0_g1_95_TPlot.pdf
TRINITY_DN65573_c0_g1:96	si_s84	TRINITY_DN65573_c0_g1	84	105	96	-32.30	-23.50	0.727554179566564	5.5	1-14,105-92;16-21,89-84	15-15,91-90[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	UGAAGGCCGAAGAGGGGAAAGG&UCUUUCCUUUCUUC-UUCUUCG	4	0.999998973233313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN65573_c0_g1_96_TPlot.pdf
TRINITY_DN65573_c0_g1:97	si_s83	TRINITY_DN65573_c0_g1	85	106	97	-30.90	-22.80	0.737864077669903	6.5	2-15,105-92;17-21,89-85	1-1,106-106[UP5];16-16,91-90[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	GAAGGCCGAAGAGGGGAAAGGU&UUCUUUCCUUUCUUC-UUCUUC	4	0.999999955453596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN65573_c0_g1_97_TPlot.pdf
TRINITY_DN65577_c0_g1:3988	si_s91	TRINITY_DN65577_c0_g1	3972	3997	3988	-34.70	-25.00	0.720461095100865	8.5	1-16,3997-3982;19-21,3974-3972	17-18,3981-3975[AILt]	(((.......((((((((((((((((&))))))))))))))))-----..)))	UCCAAGCUUUGGCGAAGAAGAGGAAA&UUUCUUCUUCUUCGCU-----UCGGA	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN65577_c0_g1_3988_TPlot.pdf
TRINITY_DN65577_c0_g1:3996	si_s73	TRINITY_DN65577_c0_g1	3985	4005	3996	-24.00	-16.00	0.666666666666667	6	2-16,4004-3990;18-21,3988-3985	1-1,4005-4005[UP5];17-17,3989-3989[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GAAGAAGAGGAAAAAAGUGGC&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN65577_c0_g1_3996_TPlot.pdf
TRINITY_DN65579_c0_g1:201	si_s79	TRINITY_DN65579_c0_g1	191	210	201	-26.20	-17.90	0.683206106870229	4	1-9,210-202;11-14,200-197;16-21,196-191	10-10,201-201[SIL];15-15,x-x[BULq]	((((((-((((.(((((((((&))))))))).)))).))))))	GAGAAG-GAGGCAAGAAAAAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN65579_c0_g1_201_TPlot.pdf
TRINITY_DN65579_c0_g1:251	si_a80	TRINITY_DN65579_c0_g1	240	260	251	-22.10	-14.60	0.660633484162896	8.5	2-14,259-247;16-17,245-244	1-1,260-260[UP5];15-15,246-246[SIL];18-21,243-240[UP3]	....((.(((((((((((((.&.))))))))))))).))....	AGAACUAGAUGAUGAAGAACU&UGUUUUUCAUUAUUAAGAAAA	3	0.99999963322098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN65579_c0_g1_251_TPlot.pdf
TRINITY_DN65579_c0_g1:252	si_a79	TRINITY_DN65579_c0_g1	241	261	252	-22.20	-14.60	0.657657657657658	9.5	3-15,259-247;17-18,245-244	1-2,261-260[UP5];16-16,246-246[SIL];19-21,243-241[UP3]	...((.(((((((((((((..&..))))))))))))).))...	GAACUAGAUGAUGAAGAACUA&UUGUUUUUCAUUAUUAAGAAA	3	0.999999993978986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN65579_c0_g1_252_TPlot.pdf
TRINITY_DN65579_c0_g1:253	si_a78	TRINITY_DN65579_c0_g1	242	262	253	-22.30	-14.60	0.654708520179372	10	4-16,259-247;18-19,245-244	1-3,262-260[UP5];17-17,246-246[SIL];20-21,243-242[UP3]	..((.(((((((((((((...&...))))))))))))).))..	AACUAGAUGAUGAAGAACUAG&AUUGUUUUUCAUUAUUAAGAA	3	0.999999998176299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN65579_c0_g1_253_TPlot.pdf
TRINITY_DN65599_c0_g1:200	si_s431	TRINITY_DN65599_c0_g1	189	208	200	-21.10	-14.12	0.669194312796208	11.5	2-6,207-203;11-21,199-189	1-1,208-208[UP5];7-10,202-200[AILq]	(((((((((((...-(((((.&.)))))....)))))))))))	GUGAUGUGUGAGUG-UGUUAA&AUAACAAUAAUUACAUAUUAU	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN65599_c0_g1_200_TPlot.pdf
TRINITY_DN65599_c0_g1:384	si_a486	TRINITY_DN65599_c0_g1	372	393	384	-24.90	-17.40	0.698795180722892	7	3-13,391-381;14-21,379-372	1-2,393-392[UP5];x-x,380-380[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AAAACGACGAUGUUUUGUAUUC&UUAUAUAGAAUAU-GUCGUUUU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN65599_c0_g1_384_TPlot.pdf
TRINITY_DN65599_c0_g1:541	si_a149	TRINITY_DN65599_c0_g1	530	554	541	-29.40	-19.30	0.656462585034014	12.5	2-6,553-549;7-21,544-530	1-1,554-554[UP5];x-x,548-545[BULt]	(((((((((((((((....(((((.&.)))))----)))))))))))))))	AUUGACUUUAAGAUAUCUGGCAACU&CGUUGU----UGUUUUAAGGUCAAU	3	0.999999989599644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN65599_c0_g1_541_TPlot.pdf
TRINITY_DN65599_c0_g1:820	si_s165	TRINITY_DN65599_c0_g1	810	829	820	-41.70	-28.60	0.685851318944844	4.5	1-9,829-821;11-15,819-815;17-17,814-814;19-21,812-810	10-10,820-820[SIL];16-16,x-x[BULq];18-18,813-813[SIL]	(((.(-(((((.(((((((((&))))))))).))))).).)))	GCGAC-UUACCGCUGGCCAUG&CAUGGCCAGGGGUAAAGAUGC	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s165_TRINITY_DN65599_c0_g1_820_TPlot.pdf
TRINITY_DN65599_c0_g1:822	si_s163	TRINITY_DN65599_c0_g1	811	831	822	-38.60	-28.40	0.735751295336788	7	2-11,830-821;13-17,819-815	1-1,831-831[UP5];12-12,820-820[SIL];18-21,814-811[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	CGACUUACCGCUGGCCAUGAC&UUCAUGGCCAGGGGUAAAGAU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s163_TRINITY_DN65599_c0_g1_822_TPlot.pdf
TRINITY_DN65599_c0_g1:823	si_s162	TRINITY_DN65599_c0_g1	812	832	823	-40.10	-28.40	0.708229426433915	7	3-12,830-821;14-18,819-815	1-2,832-831[UP5];13-13,820-820[SIL];19-21,814-812[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	GACUUACCGCUGGCCAUGACA&GUUCAUGGCCAGGGGUAAAGA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s162_TRINITY_DN65599_c0_g1_823_TPlot.pdf
TRINITY_DN65605_c0_g1:1470	si_s77	TRINITY_DN65605_c0_g1	1457	1479	1470	-25.50	-18.10	0.709803921568627	6	2-10,1478-1470;11-13,1468-1466;14-21,1464-1457	1-1,1479-1479[UP5];x-x,1469-1469[BULt];x-x,1465-1465[BULt]	((((((((.(((.(((((((((.&.)))))))))-)))-))))))))	GAGGAAGGUGAACAGAAAAGAAC&UUUUUUUUCU-UUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN65605_c0_g1_1470_TPlot.pdf
TRINITY_DN65607_c0_g1:145	si_s78	TRINITY_DN65607_c0_g1	134	154	145	-26.20	-17.28	0.659541984732824	7.5	1-9,154-146;13-21,142-134	10-12,145-143[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	AGAGGAAAGCAUAGAAGAAAA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN65607_c0_g1_145_TPlot.pdf
TRINITY_DN65607_c0_g1:146	si_s77	TRINITY_DN65607_c0_g1	135	155	146	-25.50	-17.08	0.669803921568627	6.5	1-10,155-146;14-21,142-135	11-13,145-143[SIL]	((((((((...((((((((((&))))))))))...))))))))	GAGGAAAGCAUAGAAGAAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN65607_c0_g1_146_TPlot.pdf
TRINITY_DN6560_c0_g1:754	si_a71	TRINITY_DN6560_c0_g1	743	764	754	-23.30	-16.30	0.699570815450644	9	1-5,764-760;7-20,757-744	6-6,759-758[AILt];21-21,743-743[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	CAGUGGGAGAUAAUUGAGAAGG&CUUUC-AAAUUGUUUUUCAUUA	3	0.999997049065349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN6560_c0_g1_754_TPlot.pdf
TRINITY_DN6560_c0_g1:755	si_a70	TRINITY_DN6560_c0_g1	744	765	755	-23.90	-16.30	0.682008368200837	8.5	1-6,765-760;8-21,757-744	7-7,759-758[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	AGUGGGAGAUAAUUGAGAAGGG&UCUUUC-AAAUUGUUUUUCAUU	2	0.99996777440934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6560_c0_g1_755_TPlot.pdf
TRINITY_DN6560_c0_g1:756	si_a69	TRINITY_DN6560_c0_g1	745	766	756	-24.00	-15.60	0.65	9.5	2-7,765-760;9-21,757-745	1-1,766-766[UP5];8-8,759-758[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	GUGGGAGAUAAUUGAGAAGGGU&UUCUUUC-AAAUUGUUUUUCAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN6560_c0_g1_756_TPlot.pdf
TRINITY_DN65613_c0_g1:3887	si_s207	TRINITY_DN65613_c0_g1	3876	3896	3887	-33.00	-21.50	0.651515151515151	9	1-8,3896-3889;10-15,3887-3882;17-19,3880-3878	9-9,3888-3888[SIL];16-16,3881-3881[SIL];20-21,3877-3876[UP3]	..(((.((((((.((((((((&)))))))).)))))).)))..	GAUCGCGCGCGGGUGGUAUAU&AUGUACCAGUUGUGUUCGAAA	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN65613_c0_g1_3887_TPlot.pdf
TRINITY_DN65613_c0_g1:4068	si_a738	TRINITY_DN65613_c0_g1	4047	4077	4068	-40.10	-26.10	0.650872817955112	26	1-11,4077-4067;12-18,4056-4050	x-x,4066-4057[BULt];19-21,4049-4047[UP3]	...(((((((..........(((((((((((&)))))))))))----------)))))))...	CCGCAUGGCUACAGCAACCAAGGGGUGGAGA&UCUUUACCCCU----------GGCCAUGAAC	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a738_TRINITY_DN65613_c0_g1_4068_TPlot.pdf
TRINITY_DN65613_c0_g1:4264	si_a303	TRINITY_DN65613_c0_g1	4253	4273	4264	-28.40	-18.70	0.658450704225352	10.5	3-9,4271-4265;11-18,4263-4256	1-2,4273-4272[UP5];10-10,4264-4264[SIL];19-21,4255-4253[UP3]	...((((((((.(((((((..&..))))))).))))))))...	GCCGAUCCAAGAGGGUCUUGA&AAAAGAUUCGCUUGGAUUUAU	3	0.999995576199483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN65613_c0_g1_4264_TPlot.pdf
TRINITY_DN65614_c0_g1:1228	si_a398	TRINITY_DN65614_c0_g1	1217	1237	1228	-22.40	-16.20	0.723214285714286	13	7-20,1231-1218	1-6,1237-1232[UP5];21-21,1217-1217[UP3]	.((((((((((((((......&......)))))))))))))).	CAGACAAAGCAAUUCAGUCAA&AAUAUAGAAUUGUUUUGUUUA	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN65614_c0_g1_1228_TPlot.pdf
TRINITY_DN65614_c0_g1:1618	si_a414	TRINITY_DN65614_c0_g1	1607	1627	1618	-18.10	-14.80	0.81767955801105	5.5	1-7,1627-1621;10-21,1618-1607	8-9,1620-1619[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	UAUAUUUAUUUAUUUGUAAAU&GUUUAUAUUUAAAUAAAUAUA	0	0.0144038711450263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN65614_c0_g1_1618_TPlot.pdf
TRINITY_DN65617_c0_g1:26	si_a789	TRINITY_DN65617_c0_g1	13	35	26	-24.80	-16.80	0.67741935483871	7.5	1-6,35-30;8-15,28-21;16-21,18-13	7-7,29-29[SIL];x-x,20-19[BULt]	((((((..((((((((.((((((&)))))).))))))))--))))))	AUUGGGUUAGGUAGAAUGGUAGA&UCUAUUUUUCUAUUU--UCCAAU	4	0.999999998959582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN65617_c0_g1_26_TPlot.pdf
TRINITY_DN65618_c0_g1:395	si_s440	TRINITY_DN65618_c0_g1	379	404	395	-21.60	-16.00	0.740740740740741	13.5	1-10,404-395;11-20,389-380	x-x,394-390[BULt];21-21,379-379[UP3]	.((((((((((.....((((((((((&))))))))))-----)))))))))).	AUGUUAUGUAUAUGUAGAUAUGUAGU&AUUACAUAUU-----AUAUAUAACAA	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN65618_c0_g1_395_TPlot.pdf
TRINITY_DN65618_c0_g1:396	si_s439	TRINITY_DN65618_c0_g1	380	405	396	-21.50	-17.00	0.790697674418605	12.5	1-11,405-395;12-21,389-380	x-x,394-390[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	UGUUAUGUAUAUGUAGAUAUGUAGUU&AAUUACAUAUU-----AUAUAUAACA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN65618_c0_g1_396_TPlot.pdf
TRINITY_DN65618_c0_g1:397	si_s438	TRINITY_DN65618_c0_g1	381	406	397	-21.20	-16.90	0.797169811320755	12.5	1-12,406-395;13-21,389-381	x-x,394-390[BULt]	(((((((((.....((((((((((((&))))))))))))-----)))))))))	GUUAUGUAUAUGUAGAUAUGUAGUUA&UAAUUACAUAUU-----AUAUAUAAC	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN65618_c0_g1_397_TPlot.pdf
TRINITY_DN65618_c0_g1:398	si_s437	TRINITY_DN65618_c0_g1	386	407	398	-19.70	-15.50	0.786802030456853	5	2-13,406-395;14-20,393-387	1-1,407-407[UP5];x-x,394-394[BULt];21-21,386-386[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	GUAUAUGUAGAUAUGUAGUUAA&AUAAUUACAUAUU-AUAUAUAA	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN65618_c0_g1_398_TPlot.pdf
TRINITY_DN65629_c0_g1:1783	si_a407	TRINITY_DN65629_c0_g1	1772	1792	1783	-19.80	-12.90	0.651515151515151	6.5	2-12,1791-1781;14-17,1779-1776	1-1,1792-1792[UP5];13-13,1780-1780[SIL];18-21,1775-1772[UP3]	....((((.(((((((((((.&.))))))))))).))))....	UUAAGAAUUUAAACAAAACAU&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN65629_c0_g1_1783_TPlot.pdf
TRINITY_DN65633_c0_g1:225	si_a309	TRINITY_DN65633_c0_g1	213	234	225	-33.60	-22.00	0.654761904761905	5.5	2-10,233-225;12-15,223-220;16-19,218-215;21-21,213-213	1-1,234-234[UP5];11-11,224-224[SIL];x-x,219-219[BULt];20-20,214-214[SIL]	(.((((.((((.(((((((((.&.))))))))).))))-)))).)	UGAUGGUGUAACUCCAAGCGAU&UUCGCUUGGAUUUAU-CCAUGA	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN65633_c0_g1_225_TPlot.pdf
TRINITY_DN65633_c0_g1:226	si_a287	TRINITY_DN65633_c0_g1	215	235	226	-29.20	-20.40	0.698630136986301	8	1-11,235-225;13-15,223-221	12-12,224-224[SIL];16-21,220-215[UP3]	......(((.(((((((((((&))))))))))).)))......	AUGGUGUAACUCCAAGCGAUC&GAUCGCUUGGAUUUAAAAAAG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a287_TRINITY_DN65633_c0_g1_226_TPlot.pdf
TRINITY_DN65633_c0_g1:227	si_a286	TRINITY_DN65633_c0_g1	216	236	227	-28.30	-20.40	0.720848056537102	7	2-12,235-225;14-16,223-221	1-1,236-236[UP5];13-13,224-224[SIL];17-21,220-216[UP3]	.....(((.(((((((((((.&.))))))))))).))).....	UGGUGUAACUCCAAGCGAUCG&AGAUCGCUUGGAUUUAAAAAA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN65633_c0_g1_227_TPlot.pdf
TRINITY_DN65633_c0_g1:228	si_a285	TRINITY_DN65633_c0_g1	217	237	228	-28.30	-20.40	0.720848056537102	8	3-13,235-225;15-17,223-221	1-2,237-236[UP5];14-14,224-224[SIL];18-21,220-217[UP3]	....(((.(((((((((((..&..))))))))))).)))....	GGUGUAACUCCAAGCGAUCGG&AAGAUCGCUUGGAUUUAAAAA	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN65633_c0_g1_228_TPlot.pdf
TRINITY_DN65633_c0_g1:229	si_a284	TRINITY_DN65633_c0_g1	218	238	229	-28.30	-20.40	0.720848056537102	9	4-14,235-225;16-18,223-221	1-3,238-236[UP5];15-15,224-224[SIL];19-21,220-218[UP3]	...(((.(((((((((((...&...))))))))))).)))...	GUGUAACUCCAAGCGAUCGGA&AAAGAUCGCUUGGAUUUAAAA	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN65633_c0_g1_229_TPlot.pdf
TRINITY_DN65633_c0_g1:230	si_a283	TRINITY_DN65633_c0_g1	219	239	230	-28.30	-20.40	0.720848056537102	10	5-15,235-225;17-19,223-221	1-4,239-236[UP5];16-16,224-224[SIL];20-21,220-219[UP3]	..(((.(((((((((((....&....))))))))))).)))..	UGUAACUCCAAGCGAUCGGAG&AAAAGAUCGCUUGGAUUUAAA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN65633_c0_g1_230_TPlot.pdf
TRINITY_DN65633_c0_g1:231	si_a282	TRINITY_DN65633_c0_g1	220	240	231	-30.30	-20.40	0.673267326732673	11	6-16,235-225;18-20,223-221	1-5,240-236[UP5];17-17,224-224[SIL];21-21,220-220[UP3]	.(((.(((((((((((.....&.....))))))))))).))).	GUAACUCCAAGCGAUCGGAGC&GAAAAGAUCGCUUGGAUUUAA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN65633_c0_g1_231_TPlot.pdf
TRINITY_DN65633_c0_g1:710	si_s479	TRINITY_DN65633_c0_g1	699	720	710	-26.40	-17.20	0.651515151515151	9.5	1-6,720-715;7-17,713-703	x-x,714-714[BULt];18-21,702-699[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UAUUAGUAAAUGUGGUGAUCUG&CGGAUC-CUAUAUUUAUUUAAA	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN65633_c0_g1_710_TPlot.pdf
TRINITY_DN65633_c0_g1:711	si_s478	TRINITY_DN65633_c0_g1	700	721	711	-27.20	-19.00	0.698529411764706	8.5	1-7,721-715;8-18,713-703	x-x,714-714[BULt];19-21,702-700[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	AUUAGUAAAUGUGGUGAUCUGU&ACGGAUC-CUAUAUUUAUUUAA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN65633_c0_g1_711_TPlot.pdf
TRINITY_DN65633_c0_g1:712	si_s477	TRINITY_DN65633_c0_g1	701	722	712	-27.10	-19.20	0.708487084870849	8.5	2-8,721-715;9-19,713-703	1-1,722-722[UP5];x-x,714-714[BULt];20-21,702-701[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	UUAGUAAAUGUGGUGAUCUGUA&AACGGAUC-CUAUAUUUAUUUA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN65633_c0_g1_712_TPlot.pdf
TRINITY_DN65633_c0_g1:713	si_s476	TRINITY_DN65633_c0_g1	702	723	713	-28.40	-19.20	0.676056338028169	9	3-9,721-715;10-20,713-703	1-2,723-722[UP5];x-x,714-714[BULt];21-21,702-702[UP3]	.(((((((((((.(((((((..&..)))))))-))))))))))).	UAGUAAAUGUGGUGAUCUGUAA&CAACGGAUC-CUAUAUUUAUUU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s476_TRINITY_DN65633_c0_g1_713_TPlot.pdf
TRINITY_DN65636_c0_g1:2383	si_a434	TRINITY_DN65636_c0_g1	2372	2392	2383	-36.40	-24.40	0.67032967032967	6	2-16,2391-2377;19-21,2374-2372	1-1,2392-2392[UP5];17-18,2376-2375[SIL]	(((..(((((((((((((((.&.)))))))))))))))..)))	AUUAAGUAUCCAAUGGAUCUA&AGGAUCCGUUGGAUAUGAGAU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN65636_c0_g1_2383_TPlot.pdf
TRINITY_DN65647_c0_g1:121	si_s877	TRINITY_DN65647_c0_g1	110	132	121	-22.80	-15.60	0.684210526315789	7.5	1-3,132-130;4-12,127-119;15-21,116-110	x-x,129-128[BULt];13-14,118-117[SIL]	(((((((..(((((((((..(((&)))--)))))))))..)))))))	UAUUUGUGGUUAGUUCUAGUGGA&UCU--UAGAACUAAAAAUAAAUA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s877_TRINITY_DN65647_c0_g1_121_TPlot.pdf
TRINITY_DN65647_c0_g1:327	si_a836	TRINITY_DN65647_c0_g1	316	336	327	-24.10	-16.40	0.680497925311203	17.5	10-21,327-316	1-9,336-328[UP5]	((((((((((((.........&.........))))))))))))	UUAGCAGCUUCUUUAAAGCAA&AAAAAAAAUAGAAGUUGCUAA	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN65647_c0_g1_327_TPlot.pdf
TRINITY_DN65647_c0_g1:470	si_s197	TRINITY_DN65647_c0_g1	455	479	470	-29.20	-19.40	0.664383561643836	14.5	4-10,476-470;11-21,465-455	1-3,479-477[UP5];x-x,469-466[BULt]	(((((((((((....(((((((...&...)))))))----)))))))))))	GGCUGGUAUAUUUAAUCCAAAACCU&UUAUUUUGGA----AUGUACCAGUU	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN65647_c0_g1_470_TPlot.pdf
TRINITY_DN65647_c0_g1:530	si_a22	TRINITY_DN65647_c0_g1	519	539	530	-23.50	-15.70	0.668085106382979	13	4-19,536-521	1-3,539-537[UP5];20-21,520-519[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAUGGAGCUGGAGGUAGAAAA&CUAUUUAUUUUUAGUUCUAAG	3	0.999953693281657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN65647_c0_g1_530_TPlot.pdf
TRINITY_DN65647_c0_g1:532	si_a20	TRINITY_DN65647_c0_g1	521	544	532	-26.70	-19.32	0.723595505617978	15	1-3,544-542;6-21,536-521	4-5,541-537[AILt]	((((((((((((((((.....(((&)))---..))))))))))))))))	UGGAGCUGGAGGUAGAAAAGUGGC&GCC---UAUUUAUUUUUAGUUCUA	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN65647_c0_g1_532_TPlot.pdf
TRINITY_DN65647_c0_g1:533	si_a19	TRINITY_DN65647_c0_g1	522	545	533	-27.00	-18.32	0.678518518518519	16	2-4,544-542;7-21,536-522	1-1,545-545[UP5];5-6,541-537[AILt]	(((((((((((((((.....(((.&.)))---..)))))))))))))))	GGAGCUGGAGGUAGAAAAGUGGCA&AGCC---UAUUUAUUUUUAGUUCU	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN65647_c0_g1_533_TPlot.pdf
TRINITY_DN65647_c0_g1:534	si_a790	TRINITY_DN65647_c0_g1	523	543	534	-25.80	-17.30	0.670542635658915	6.5	1-14,543-530;16-18,529-527;20-21,524-523	15-15,x-x[BULq];19-19,526-525[AILt]	((..(((-((((((((((((((&)))))))))))))).)))-.))	GAGCUGG-AGGUAGAAAAGUGG&CUAUUUUUCUAUUUUCCA-AUC	2	0.999693409243789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN65647_c0_g1_534_TPlot.pdf
TRINITY_DN65647_c0_g1:535	si_a789	TRINITY_DN65647_c0_g1	525	544	535	-24.80	-17.00	0.685483870967742	7	2-15,543-530;17-19,529-527	1-1,544-544[UP5];16-16,x-x[BULq];20-21,526-525[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	GCUGG-AGGUAGAAAAGUGGC&UCUAUUUUUCUAUUUUCCAAU	2	0.999960180951311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN65647_c0_g1_535_TPlot.pdf
TRINITY_DN65647_c0_g1:536	si_a788	TRINITY_DN65647_c0_g1	526	545	536	-24.80	-17.00	0.685483870967742	8	3-16,543-530;18-20,529-527	1-2,545-544[UP5];17-17,x-x[BULq];21-21,526-526[UP3]	.(((-((((((((((((((..&..)))))))))))))).))).	CUGG-AGGUAGAAAAGUGGCA&UUCUAUUUUUCUAUUUUCCAA	2	0.999993283641452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN65647_c0_g1_536_TPlot.pdf
TRINITY_DN65649_c0_g1:1424	si_s247	TRINITY_DN65649_c0_g1	1413	1438	1424	-31.70	-22.30	0.703470031545741	15	1-6,1438-1433;7-17,1427-1417	x-x,1432-1428[BULt];18-21,1416-1413[UP3]	....(((((((((((.....((((((&))))))-----)))))))))))....	UACCUAUCGGGAAAUUCUGCGCCUGU&AUAGGC-----AUUUCCCGAUAUAUU	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN65649_c0_g1_1424_TPlot.pdf
TRINITY_DN65663_c0_g1:143	si_a474	TRINITY_DN65663_c0_g1	128	152	143	-23.60	-15.70	0.665254237288135	10.5	2-10,151-143;11-21,138-128	1-1,152-152[UP5];x-x,142-139[BULt]	(((((((((((....(((((((((.&.)))))))))----)))))))))))	UUUAUAUAACAGUAUAUAAUUGCAC&AUGUAAUUAU----UGUUAUAUAGA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN65663_c0_g1_143_TPlot.pdf
TRINITY_DN65666_c0_g1:674	si_a409	TRINITY_DN65666_c0_g1	663	683	674	-19.50	-13.30	0.682051282051282	9	1-15,683-669	16-21,668-663[UP3]	......(((((((((((((((&)))))))))))))))......	UCCGGAAAGUAUGAGCAAAAU&GUUUUGUUUAUAUUUAAAUAA	2	0.999997862791726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN65666_c0_g1_674_TPlot.pdf
TRINITY_DN65673_c0_g1:1038	si_a785	TRINITY_DN65673_c0_g1	1028	1048	1038	-25.90	-17.20	0.664092664092664	7	1-7,1048-1042;9-15,1039-1033;17-21,1032-1028	8-8,1041-1040[AILt];16-16,x-x[BULq]	(((((-(((((((..(((((((&)))))))-.))))))).)))))	GAAAA-AGAAAAGGAAGAGGAG&CUCUUCU-AUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN65673_c0_g1_1038_TPlot.pdf
TRINITY_DN65673_c0_g1:1044	si_s896	TRINITY_DN65673_c0_g1	1033	1053	1044	-31.60	-21.50	0.680379746835443	9	3-14,1051-1040;17-20,1037-1034	1-2,1053-1052[UP5];15-16,1039-1038[SIL];21-21,1033-1033[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	AGAAAAGGAAGAGGAGGCUGA&UAGGCUUUCUCUUCAAUUUCA	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN65673_c0_g1_1044_TPlot.pdf
TRINITY_DN65673_c0_g1:207	si_s149	TRINITY_DN65673_c0_g1	195	216	207	-37.20	-25.10	0.674731182795699	8	2-11,215-206;13-13,203-203;15-21,201-195	1-1,216-216[UP5];12-12,205-204[AILt];14-14,202-202[SIL]	(((((((.(..((((((((((.&.))))))))))-.).)))))))	CCAUGGAGUGAUCUUUGGGUUG&AAACCCAAAGG-AGGUUCAUGG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s149_TRINITY_DN65673_c0_g1_207_TPlot.pdf
TRINITY_DN65673_c0_g1:688	si_a406	TRINITY_DN65673_c0_g1	677	697	688	-19.80	-13.60	0.686868686868687	8	1-9,697-689;12-18,686-680	10-11,688-687[SIL];19-21,679-677[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	CAGAAAUAUACUCAAAGCAAU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN65673_c0_g1_688_TPlot.pdf
TRINITY_DN65679_c0_g1:191	si_a752	TRINITY_DN65679_c0_g1	180	200	191	-34.80	-26.20	0.752873563218391	10	4-4,197-197;7-21,194-180	1-3,200-198[UP5];5-6,196-195[SIL]	(((((((((((((((..(...&...)..)))))))))))))))	GAAGCCCAAAGGAGGCGCUGU&CAUGAACCUCCUUUGGGUUUU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN65679_c0_g1_191_TPlot.pdf
TRINITY_DN65680_c0_g1:577	si_a497	TRINITY_DN65680_c0_g1	564	586	577	-32.00	-21.30	0.665625	10.5	3-10,584-577;11-12,575-574;13-21,572-564	1-2,586-585[UP5];x-x,576-576[BULt];x-x,573-573[BULt]	(((((((((.((.((((((((..&..))))))))-))-)))))))))	GAGGAAGACAGAUGAAAUGGCCC&AUGUCGUUUU-UC-GUCUUCCUU	2	0.99999999972582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN65680_c0_g1_577_TPlot.pdf
TRINITY_DN6568_c0_g2:445	si_a471	TRINITY_DN6568_c0_g2	434	454	445	-21.10	-14.40	0.682464454976303	8	2-9,453-446;11-17,444-438	1-1,454-454[UP5];10-10,445-445[SIL];18-21,437-434[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AUGGAACAAUAUUUGCAUAUG&AAUAUGUAAUUAUUGUUAUAU	4	0.999967071746998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6568_c0_g2_445_TPlot.pdf
TRINITY_DN6568_c0_g2:851	si_a784	TRINITY_DN6568_c0_g2	840	860	851	-24.70	-16.50	0.668016194331984	5	2-14,859-847;17-21,844-840	1-1,860-860[UP5];15-16,846-845[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AGAAUCAAGAAAUAGGAGAGA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6568_c0_g2_851_TPlot.pdf
TRINITY_DN6569_c0_g1:3838	si_s161	TRINITY_DN6569_c0_g1	3827	3851	3838	-41.50	-27.40	0.660240963855422	15.5	1-7,3851-3845;8-14,3840-3834;16-17,3832-3831	x-x,3844-3841[BULt];15-15,3833-3833[SIL];18-21,3830-3827[UP3]	....((.(((((((....(((((((&)))))))----))))))).))....	GGUCGCGCCUGGCCUUCUGUGAGCC&GGUUCAU----GGCCAGGGGUAAAG	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s161_TRINITY_DN6569_c0_g1_3838_TPlot.pdf
TRINITY_DN6569_c0_g1:4638	si_s69	TRINITY_DN6569_c0_g1	4626	4647	4638	-23.40	-17.70	0.756410256410256	7.5	1-12,4647-4636;13-20,4634-4627	x-x,4635-4635[BULt];21-21,4626-4626[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	CGAGGAAGAGGGAAUGGAAGUU&AACUUCUAUUUU-UUUUCUUUC	4	0.999999618795197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6569_c0_g1_4638_TPlot.pdf
TRINITY_DN6569_c0_g1:4639	si_s68	TRINITY_DN6569_c0_g1	4627	4648	4639	-23.10	-17.70	0.766233766233766	6	2-13,4647-4636;14-21,4634-4627	1-1,4648-4648[UP5];x-x,4635-4635[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	GAGGAAGAGGGAAUGGAAGUUA&CAACUUCUAUUUU-UUUUCUUU	2	0.982048939284292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6569_c0_g1_4639_TPlot.pdf
TRINITY_DN6569_c0_g1:4821	si_a67	TRINITY_DN6569_c0_g1	4810	4831	4821	-27.20	-17.72	0.651470588235294	11.5	1-9,4831-4823;13-20,4818-4811	10-12,4822-4819[AILt];21-21,4810-4810[UP3]	.((((((((....(((((((((&)))))))))-...)))))))).	CAGAGACAGAAGAGAGAGAAGC&GCUUCUUUC-AAAUUGUUUUUC	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN6569_c0_g1_4821_TPlot.pdf
TRINITY_DN6569_c0_g1:4823	si_a66	TRINITY_DN6569_c0_g1	4811	4832	4823	-26.70	-19.42	0.727340823970038	9.5	1-10,4832-4823;14-21,4818-4811	11-13,4822-4819[AILt]	((((((((....((((((((((&))))))))))-...))))))))	AGAGACAGAAGAGAGAGAAGCG&CGCUUCUUUC-AAAUUGUUUUU	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN6569_c0_g1_4823_TPlot.pdf
TRINITY_DN65709_c0_g1:613	si_a430	TRINITY_DN65709_c0_g1	598	622	613	-33.70	-26.20	0.777448071216617	13	3-11,620-612;12-21,607-598	1-2,622-621[UP5];x-x,611-608[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	CAUGUCCGACGACUGGAUCCUGUCC&AUAUAGGAUCC----GUUGGAUAUG	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN65709_c0_g1_613_TPlot.pdf
TRINITY_DN65718_c0_g1:563	si_s818	TRINITY_DN65718_c0_g1	552	574	563	-23.70	-15.78	0.665822784810127	13	1-8,574-567;11-19,562-554	9-10,566-563[AILt];20-21,553-552[UP3]	..(((((((((....((((((((&))))))))--..)))))))))..	CAUUUCAUUGUACAUAGAGGAGG&CCUUUUCU--UAAUAAUGAAAAA	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN65718_c0_g1_563_TPlot.pdf
TRINITY_DN65718_c0_g1:952	si_a897	TRINITY_DN65718_c0_g1	941	961	952	-21.20	-15.20	0.716981132075472	8.5	2-15,960-947	1-1,961-961[UP5];16-21,946-941[UP3]	......((((((((((((((.&.))))))))))))))......	AUUAACUUGCUUGUUAUUACA&AGUAAUAAUAAGUAAUAUAAA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN65718_c0_g1_952_TPlot.pdf
TRINITY_DN65718_c0_g1:953	si_a896	TRINITY_DN65718_c0_g1	942	962	953	-21.60	-15.20	0.703703703703704	9.5	3-16,960-947	1-2,962-961[UP5];17-21,946-942[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUAACUUGCUUGUUAUUACAG&UAGUAAUAAUAAGUAAUAUAA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN65718_c0_g1_953_TPlot.pdf
TRINITY_DN65718_c0_g1:954	si_a895	TRINITY_DN65718_c0_g1	943	963	954	-21.70	-15.20	0.700460829493088	10.5	4-17,960-947	1-3,963-961[UP5];18-21,946-943[UP3]	....((((((((((((((...&...))))))))))))))....	UAACUUGCUUGUUAUUACAGG&AUAGUAAUAAUAAGUAAUAUA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN65718_c0_g1_954_TPlot.pdf
TRINITY_DN65718_c0_g1:956	si_a893	TRINITY_DN65718_c0_g1	945	965	956	-21.70	-15.20	0.700460829493088	12	6-19,960-947	1-5,965-961[UP5];20-21,946-945[UP3]	..((((((((((((((.....&.....))))))))))))))..	ACUUGCUUGUUAUUACAGGAA&AUAUAGUAAUAAUAAGUAAUA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN65718_c0_g1_956_TPlot.pdf
TRINITY_DN65718_c0_g1:957	si_a892	TRINITY_DN65718_c0_g1	946	966	957	-21.30	-15.20	0.713615023474178	13	7-20,960-947	1-6,966-961[UP5];21-21,946-946[UP3]	.((((((((((((((......&......)))))))))))))).	CUUGCUUGUUAUUACAGGAAG&AAUAUAGUAAUAAUAAGUAAU	2	0.754979847840344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN65718_c0_g1_957_TPlot.pdf
TRINITY_DN6571_c0_g1:1643	si_s72	TRINITY_DN6571_c0_g1	1633	1652	1643	-24.10	-16.20	0.672199170124481	8	2-10,1651-1643;13-19,1641-1635	1-1,1652-1652[UP5];11-12,1642-1642[AILq];20-21,1634-1633[UP3]	..(((((((.-(((((((((.&.)))))))))..)))))))..	AUGGAGGGAU-AAAAAUAGAU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6571_c0_g1_1643_TPlot.pdf
TRINITY_DN65721_c0_g1:1159	si_a596	TRINITY_DN65721_c0_g1	1148	1168	1159	-32.30	-22.80	0.705882352941177	9	3-16,1166-1153	1-2,1168-1167[UP5];17-21,1152-1148[UP3]	.....((((((((((((((..&..)))))))))))))).....	ACAAGGCGAAAGUUCUGUCAC&AGGACAGAAUUUUCGCAAUUC	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN65721_c0_g1_1159_TPlot.pdf
TRINITY_DN65721_c0_g1:1160	si_a595	TRINITY_DN65721_c0_g1	1149	1169	1160	-30.30	-22.80	0.752475247524752	10	4-17,1166-1153	1-3,1169-1167[UP5];18-21,1152-1149[UP3]	....((((((((((((((...&...))))))))))))))....	CAAGGCGAAAGUUCUGUCACG&AAGGACAGAAUUUUCGCAAUU	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN65721_c0_g1_1160_TPlot.pdf
TRINITY_DN65721_c0_g1:1163	si_a592	TRINITY_DN65721_c0_g1	1152	1175	1163	-32.80	-23.52	0.717073170731707	11.5	1-4,1175-1172;7-20,1166-1153	5-6,1171-1167[AILt];21-21,1152-1152[UP3]	.((((((((((((((.....((((&))))---..)))))))))))))).	GGCGAAAGUUCUGUCACGACUCUU&AAGA---AGGACAGAAUUUUCGCA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN65721_c0_g1_1163_TPlot.pdf
TRINITY_DN65721_c0_g1:1164	si_a591	TRINITY_DN65721_c0_g1	1153	1176	1164	-33.80	-26.02	0.769822485207101	10.5	1-5,1176-1172;8-21,1166-1153	6-7,1171-1167[AILt]	((((((((((((((.....(((((&)))))---..))))))))))))))	GCGAAAGUUCUGUCACGACUCUUG&CAAGA---AGGACAGAAUUUUCGC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a591_TRINITY_DN65721_c0_g1_1164_TPlot.pdf
TRINITY_DN65721_c0_g1:1166	si_a589	TRINITY_DN65721_c0_g1	1155	1178	1166	-30.60	-20.32	0.664052287581699	13.5	3-7,1176-1172;10-21,1166-1155	1-2,1178-1177[UP5];8-9,1171-1167[AILt]	((((((((((((.....(((((..&..)))))---..))))))))))))	GAAAGUUCUGUCACGACUCUUGAG&AACAAGA---AGGACAGAAUUUUC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a589_TRINITY_DN65721_c0_g1_1166_TPlot.pdf
TRINITY_DN65721_c0_g1:1194	si_s898	TRINITY_DN65721_c0_g1	1173	1203	1194	-30.70	-20.60	0.671009771986971	25	1-10,1203-1194;11-20,1183-1174	x-x,1193-1184[BULt];21-21,1173-1173[UP3]	.((((((((((..........((((((((((&))))))))))----------)))))))))).	CUUGAGAUUGAACAAGGAGGAGGAGGAGGCU&GGCUUUCUCU----------UCAAUUUCAAU	3	0.999999461173891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN65721_c0_g1_1194_TPlot.pdf
TRINITY_DN65721_c0_g1:1195	si_s897	TRINITY_DN65721_c0_g1	1174	1204	1195	-31.30	-20.50	0.654952076677316	25.5	2-11,1203-1194;12-21,1183-1174	1-1,1204-1204[UP5];x-x,1193-1184[BULt]	((((((((((..........((((((((((.&.))))))))))----------))))))))))	UUGAGAUUGAACAAGGAGGAGGAGGAGGCUG&AGGCUUUCUCU----------UCAAUUUCAA	4	0.99999996863755	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN65721_c0_g1_1195_TPlot.pdf
TRINITY_DN65721_c0_g1:1196	si_a498	TRINITY_DN65721_c0_g1	1185	1211	1196	-33.50	-22.10	0.659701492537313	18.5	1-5,1211-1207;6-11,1200-1195;13-21,1193-1185	x-x,1206-1201[BULt];12-12,1194-1194[SIL]	(((((((((.((((((......(((((&)))))------)))))).)))))))))	CAAGGAGGAGGAGGAGGCUGAUCGAUA&UGUCG------UUUUUCGUCUUCCUUG	3	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN65721_c0_g1_1196_TPlot.pdf
TRINITY_DN65721_c0_g1:1262	si_a336	TRINITY_DN65721_c0_g1	1250	1271	1262	-31.20	-20.50	0.657051282051282	12	4-13,1268-1259;14-16,1257-1255	1-3,1271-1269[UP5];x-x,1258-1258[BULt];17-21,1254-1250[UP3]	.....(((.((((((((((...&...))))))))))-))).....	CGCACUUCUGGGACGAGGAGAA&UAUUCCUUGUCCC-GAAAAUAU	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN65721_c0_g1_1262_TPlot.pdf
TRINITY_DN65721_c0_g1:1263	si_a335	TRINITY_DN65721_c0_g1	1251	1272	1263	-31.10	-20.50	0.659163987138264	13	5-14,1268-1259;15-17,1257-1255	1-4,1272-1269[UP5];x-x,1258-1258[BULt];18-21,1254-1251[UP3]	....(((.((((((((((....&....))))))))))-)))....	GCACUUCUGGGACGAGGAGAAA&UUAUUCCUUGUCCC-GAAAAUA	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN65721_c0_g1_1263_TPlot.pdf
TRINITY_DN65721_c0_g1:1268	si_a330	TRINITY_DN65721_c0_g1	1257	1276	1268	-30.50	-22.50	0.737704918032787	7.5	1-7,1276-1270;9-20,1269-1258	8-8,x-x[BULq];21-21,1257-1257[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	CUGGGACGAGGAG-AAAGGAG&UUUUUUUAUUCCUUGUCCCGA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN65721_c0_g1_1268_TPlot.pdf
TRINITY_DN65721_c0_g1:1269	si_a329	TRINITY_DN65721_c0_g1	1258	1277	1269	-29.60	-23.80	0.804054054054054	7	1-8,1277-1270;10-21,1269-1258	9-9,x-x[BULq]	((((((((((((-((((((((&)))))))).))))))))))))	UGGGACGAGGAG-AAAGGAGU&AUUUUUUUAUUCCUUGUCCCG	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN65721_c0_g1_1269_TPlot.pdf
TRINITY_DN65721_c0_g1:1270	si_a328	TRINITY_DN65721_c0_g1	1259	1278	1270	-30.10	-23.40	0.777408637873754	7.5	2-9,1277-1270;11-21,1269-1259	1-1,1278-1278[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	GGGACGAGGAG-AAAGGAGUG&GAUUUUUUUAUUCCUUGUCCC	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN65721_c0_g1_1270_TPlot.pdf
TRINITY_DN65721_c0_g1:343	si_s87	TRINITY_DN65721_c0_g1	332	355	343	-32.90	-25.50	0.775075987841945	11	2-9,354-347;10-19,343-334	1-1,355-355[UP5];x-x,346-344[BULt];20-21,333-332[UP3]	..((((((((((...((((((((.&.))))))))---))))))))))..	AUGCGAAGAAGAACAAGGAGGGAU&UUCCUUUCU---UCUUCUUCGCUU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN65721_c0_g1_343_TPlot.pdf
TRINITY_DN65721_c0_g1:893	si_a80	TRINITY_DN65721_c0_g1	881	902	893	-22.10	-14.50	0.656108597285068	11.5	1-11,902-892;14-19,888-883	12-13,891-889[AILt];20-21,882-881[UP3]	..((((((...(((((((((((&)))))))))))-..))))))..	UCUUCUUGCAGAGUGGAGAGCA&UGUUUUUCAUU-AUUAAGAAAA	3	0.999999907410385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN65721_c0_g1_893_TPlot.pdf
TRINITY_DN65721_c0_g1:961	si_a502	TRINITY_DN65721_c0_g1	950	971	961	-32.10	-24.20	0.753894080996885	9	1-7,971-965;8-19,963-952	x-x,964-964[BULt];20-21,951-950[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	CCUUCAGGGAAGACAGGGAGGC&GUUUUUC-GUCUUCCUUGGAAU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN65721_c0_g1_961_TPlot.pdf
TRINITY_DN65721_c0_g1:962	si_a501	TRINITY_DN65721_c0_g1	951	972	962	-33.50	-26.30	0.785074626865672	8	1-8,972-965;9-20,963-952	x-x,964-964[BULt];21-21,951-951[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	CUUCAGGGAAGACAGGGAGGCG&CGUUUUUC-GUCUUCCUUGGAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN65721_c0_g1_962_TPlot.pdf
TRINITY_DN65721_c0_g1:966	si_a498	TRINITY_DN65721_c0_g1	954	975	966	-33.50	-25.10	0.749253731343284	9.5	3-11,973-965;12-21,963-954	1-2,975-974[UP5];x-x,964-964[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	CAGGGAAGACAGGGAGGCGAAG&UGUCGUUUUUC-GUCUUCCUUG	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN65721_c0_g1_966_TPlot.pdf
TRINITY_DN65721_c0_g1:978	si_a495	TRINITY_DN65721_c0_g1	965	987	978	-31.90	-22.70	0.711598746081505	13	4-10,984-978;11-21,975-965	1-3,987-985[UP5];x-x,977-976[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	GGGAGGCGAAGGCGAUGACAAUG&AUAUGUCGUU--UUUCGUCUUCC	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN65721_c0_g1_978_TPlot.pdf
TRINITY_DN65721_c0_g1:979	si_a494	TRINITY_DN65721_c0_g1	966	988	979	-29.50	-19.40	0.657627118644068	15	5-11,984-978;12-21,975-966	1-4,988-985[UP5];x-x,977-976[BULt]	((((((((((..(((((((....&....)))))))--))))))))))	GGAGGCGAAGGCGAUGACAAUGA&AAUAUGUCGUU--UUUCGUCUUC	4	0.999999999999968	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN65721_c0_g1_979_TPlot.pdf
TRINITY_DN65723_c0_g1:263	si_s80	TRINITY_DN65723_c0_g1	250	272	263	-28.20	-18.40	0.652482269503546	11	1-6,272-267;8-11,265-262;12-21,259-250	7-7,266-266[SIL];x-x,261-260[BULt]	((((((((((..((((.((((((&)))))).))))--))))))))))	GAAGGAGAGGCUGGAGUGAGGAA&UUUUUCUUUCC--UUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN65723_c0_g1_263_TPlot.pdf
TRINITY_DN65726_c0_g1:1655	si_a645	TRINITY_DN65726_c0_g1	1636	1664	1655	-29.40	-21.70	0.738095238095238	12	1-16,1664-1649;17-21,1640-1636	x-x,1648-1641[BULt]	(((((........((((((((((((((((&))))))))))))))))--------)))))	UUCCCAUUGCAGCGAUAUGUUACUCGGGA&UUUUGAGUAAUAUAUC--------GGGAA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN65726_c0_g1_1655_TPlot.pdf
TRINITY_DN65726_c0_g1:1660	si_a640	TRINITY_DN65726_c0_g1	1649	1669	1660	-24.10	-18.20	0.755186721991701	12.5	6-21,1664-1649	1-5,1669-1665[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUAUGUUACUCGGGAUGCUA&GAUUUUUUUGAGUAAUAUAUC	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN65726_c0_g1_1660_TPlot.pdf
TRINITY_DN65726_c0_g1:1940	si_a149	TRINITY_DN65726_c0_g1	1930	1949	1940	-29.40	-21.40	0.727891156462585	4	1-12,1949-1938;15-21,1936-1930	13-14,1937-1937[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	AUUGGCUC-AAAACAACGACG&CGUUGUUGUUUUAAGGUCAAU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN65726_c0_g1_1940_TPlot.pdf
TRINITY_DN65726_c0_g1:1941	si_a148	TRINITY_DN65726_c0_g1	1931	1950	1941	-30.30	-20.30	0.66996699669967	5	2-13,1949-1938;16-21,1936-1931	1-1,1950-1950[UP5];14-15,1937-1937[AILq]	((((((.-((((((((((((.&.))))))))))))..))))))	UUGGCUC-AAAACAACGACGG&UCGUUGUUGUUUUAAGGUCAA	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN65726_c0_g1_1941_TPlot.pdf
TRINITY_DN65726_c0_g1:2063	si_a318	TRINITY_DN65726_c0_g1	2052	2072	2063	-22.50	-15.10	0.671111111111111	11.5	4-16,2069-2057	1-3,2072-2070[UP5];17-21,2056-2052[UP3]	.....(((((((((((((...&...))))))))))))).....	UUGCUAAAGUCAUGGGUACAG&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999994833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN65726_c0_g1_2063_TPlot.pdf
TRINITY_DN65726_c0_g1:2258	si_a141	TRINITY_DN65726_c0_g1	2247	2267	2258	-23.80	-16.90	0.710084033613445	11.5	4-15,2264-2253;17-20,2251-2248	1-3,2267-2265[UP5];16-16,2252-2252[SIL];21-21,2247-2247[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	AGGAAGGACAGCGAUUGGCUG&UAAUUAAUCGUUGUUGUUUUA	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN65726_c0_g1_2258_TPlot.pdf
TRINITY_DN65726_c0_g1:2259	si_a140	TRINITY_DN65726_c0_g1	2248	2268	2259	-25.20	-19.30	0.765873015873016	8.5	1-3,2268-2266;5-16,2264-2253;18-21,2251-2248	4-4,2265-2265[SIL];17-17,2252-2252[SIL]	((((.((((((((((((.(((&))).)))))))))))).))))	GGAAGGACAGCGAUUGGCUGC&GUAAUUAAUCGUUGUUGUUUU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN65726_c0_g1_2259_TPlot.pdf
TRINITY_DN65726_c0_g1:2260	si_a139	TRINITY_DN65726_c0_g1	2249	2269	2260	-25.90	-19.10	0.737451737451738	8.5	2-4,2268-2266;6-17,2264-2253;19-21,2251-2249	1-1,2269-2269[UP5];5-5,2265-2265[SIL];18-18,2252-2252[SIL]	(((.((((((((((((.(((.&.))).)))))))))))).)))	GAAGGACAGCGAUUGGCUGCA&AGUAAUUAAUCGUUGUUGUUU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN65726_c0_g1_2260_TPlot.pdf
TRINITY_DN65726_c0_g1:2261	si_a138	TRINITY_DN65726_c0_g1	2250	2270	2261	-26.30	-17.80	0.67680608365019	10	3-5,2268-2266;7-18,2264-2253;20-21,2251-2250	1-2,2270-2269[UP5];6-6,2265-2265[SIL];19-19,2252-2252[SIL]	((.((((((((((((.(((..&..))).)))))))))))).))	AAGGACAGCGAUUGGCUGCAU&UAGUAAUUAAUCGUUGUUGUU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN65726_c0_g1_2261_TPlot.pdf
TRINITY_DN65726_c0_g1:4024	si_a758	TRINITY_DN65726_c0_g1	4013	4034	4024	-34.00	-24.00	0.705882352941177	9	1-9,4034-4026;10-20,4024-4014	x-x,4025-4025[BULt];21-21,4013-4013[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AAGUCGGGAGCCUUGAAGGGGG&CCUCCUUUG-GGUUUUUGAUUG	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN65726_c0_g1_4024_TPlot.pdf
TRINITY_DN65728_c0_g1:178	si_a751	TRINITY_DN65728_c0_g1	167	189	178	-37.20	-24.38	0.655376344086021	13.5	1-4,189-186;7-18,181-170	5-6,185-182[AILt];19-21,169-167[UP3]	...((((((((((((....((((&))))--..))))))))))))...	CUGUCCGGAGGAGGUGGUGGUGG&CCAU--GAACCUCCUUUGGGUUU	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN65728_c0_g1_178_TPlot.pdf
TRINITY_DN65728_c0_g1:179	si_a750	TRINITY_DN65728_c0_g1	168	187	179	-39.70	-26.10	0.657430730478589	9	1-5,187-183;8-19,181-170	6-7,182-182[AILq];20-21,169-168[UP3]	..((((((((((((.-(((((&)))))..))))))))))))..	UGUCCGGAGGAGGUG-GUGGU&GCCAUGAACCUCCUUUGGGUU	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN65728_c0_g1_179_TPlot.pdf
TRINITY_DN6573_c0_g1:537	si_s82	TRINITY_DN6573_c0_g1	526	547	537	-28.90	-19.90	0.688581314878893	11	3-9,545-539;12-19,535-528	1-2,547-546[UP5];10-11,538-536[AILt];20-21,527-526[UP3]	..((((((((...(((((((..&..)))))))-..))))))))..	UUGAAGAAGAUUUGGAAAGAUC&UUUCUUUCC-UUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6573_c0_g1_537_TPlot.pdf
TRINITY_DN6573_c0_g1:954	si_s510	TRINITY_DN6573_c0_g1	938	963	954	-24.80	-16.30	0.657258064516129	9	2-11,962-953;13-15,951-949;16-21,943-938	1-1,963-963[UP5];12-12,952-952[SIL];x-x,948-944[BULt]	((((((.....(((.((((((((((.&.)))))))))).)))-----))))))	GAAUUAUGCCAAGAUUAUGGAAUUGG&ACAAUUCUAUAUUCU-----UAAUUC	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s510_TRINITY_DN6573_c0_g1_954_TPlot.pdf
TRINITY_DN6574_c0_g1:1815	si_a312	TRINITY_DN6574_c0_g1	1805	1824	1815	-31.20	-20.50	0.657051282051282	7	1-5,1824-1820;7-10,1818-1815;12-20,1814-1806	6-6,1819-1819[SIL];11-11,x-x[BULq];21-21,1805-1805[UP3]	.(((((((((-((((.(((((&))))).)))).))))))))).	CGAUCAUGGA-AAAUGCGAGU&GCUUGGAUUUAUCCAUGAUUU	2	0.997154840359294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN6574_c0_g1_1815_TPlot.pdf
TRINITY_DN6574_c0_g1:1834	si_s16	TRINITY_DN6574_c0_g1	1823	1846	1834	-25.60	-16.70	0.65234375	11.5	1-7,1846-1840;8-20,1836-1824	x-x,1839-1837[BULt];21-21,1823-1823[UP3]	.(((((((((((((...(((((((&)))))))---))))))))))))).	GUGUGGUCAAUGUGUAUGUAAUGA&UUAUUAC---UAUAUUGAUUGCAA	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN6574_c0_g1_1834_TPlot.pdf
TRINITY_DN65753_c0_g1:1277	si_a410	TRINITY_DN65753_c0_g1	1266	1286	1277	-17.80	-11.80	0.662921348314607	7.5	1-14,1286-1273	15-21,1272-1266[UP3]	.......((((((((((((((&)))))))))))))).......	GAUUGUCAGAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999998838419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN65753_c0_g1_1277_TPlot.pdf
TRINITY_DN65753_c0_g1:1279	si_a408	TRINITY_DN65753_c0_g1	1268	1288	1279	-20.10	-15.10	0.751243781094527	6.5	2-16,1287-1273	1-1,1288-1288[UP5];17-21,1272-1268[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUGUCAGAUAUAAACAAAACU&UGUUUUGUUUAUAUUUAAAUA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN65753_c0_g1_1279_TPlot.pdf
TRINITY_DN65753_c0_g1:1281	si_a406	TRINITY_DN65753_c0_g1	1270	1290	1281	-19.80	-15.10	0.762626262626263	8.5	4-18,1287-1273	1-3,1290-1288[UP5];19-21,1272-1270[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUCAGAUAUAAACAAAACUGA&AUUGUUUUGUUUAUAUUUAAA	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN65753_c0_g1_1281_TPlot.pdf
TRINITY_DN65753_c0_g1:1283	si_a404	TRINITY_DN65753_c0_g1	1272	1292	1283	-21.70	-15.10	0.695852534562212	10.5	6-20,1287-1273	1-5,1292-1288[UP5];21-21,1272-1272[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGAUAUAAACAAAACUGAAA&GAAUUGUUUUGUUUAUAUUUA	4	0.999999996694479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN65753_c0_g1_1283_TPlot.pdf
TRINITY_DN65753_c0_g1:1284	si_a403	TRINITY_DN65753_c0_g1	1273	1293	1284	-22.00	-14.90	0.677272727272727	11.5	7-21,1287-1273	1-6,1293-1288[UP5]	(((((((((((((((......&......)))))))))))))))	AGAUAUAAACAAAACUGAAAU&AGAAUUGUUUUGUUUAUAUUU	2	0.999998270355489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN65753_c0_g1_1284_TPlot.pdf
TRINITY_DN65753_c0_g1:47	si_s80	TRINITY_DN65753_c0_g1	36	57	47	-28.20	-20.20	0.716312056737589	8	3-6,55-52;7-20,50-37	1-2,57-56[UP5];x-x,51-51[BULt];21-21,36-36[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AAAGAAGAAAGGAAAUGAGGUG&UUUUUC-UUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN65753_c0_g1_47_TPlot.pdf
TRINITY_DN65758_c0_g1:328	si_a784	TRINITY_DN65758_c0_g1	313	337	328	-24.70	-16.90	0.684210526315789	8	1-4,337-334;6-13,332-325;14-21,320-313	5-5,333-333[SIL];x-x,324-321[BULt]	((((((((....((((((((.((((&)))).))))))))----))))))))	GAAAUGGAGCAAAAGAUAGAUGAGU&ACUCUUCUAUUUU----UCUAUUUU	3	0.999999999998344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN65758_c0_g1_328_TPlot.pdf
TRINITY_DN65761_c0_g1:1615	si_a404	TRINITY_DN65761_c0_g1	1604	1624	1615	-21.70	-14.60	0.672811059907834	6.5	1-11,1624-1614;14-20,1611-1605	12-13,1613-1612[SIL];21-21,1604-1604[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	CAGAUAUGCUCAAGACAAUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN65761_c0_g1_1615_TPlot.pdf
TRINITY_DN65762_c0_g1:462	si_s437	TRINITY_DN65762_c0_g1	451	471	462	-19.70	-15.20	0.771573604060914	11.5	6-20,466-452	1-5,471-467[UP5];21-21,451-451[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUGUGUAUGAUAUGUACGACA&AUAAUUACAUAUUAUAUAUAA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN65762_c0_g1_462_TPlot.pdf
TRINITY_DN65771_c0_g1:273	si_a399	TRINITY_DN65771_c0_g1	262	282	273	-22.60	-15.00	0.663716814159292	8	2-8,281-275;10-19,273-264	1-1,282-282[UP5];9-9,274-274[SIL];20-21,263-262[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	ACAAGCAGAACAUUUUUGUAA&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999439905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN65771_c0_g1_273_TPlot.pdf
TRINITY_DN65777_c0_g1:883	si_s891	TRINITY_DN65777_c0_g1	872	893	883	-29.60	-21.50	0.726351351351351	6	1-9,893-885;10-18,883-875	x-x,884-884[BULt];19-21,874-872[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	GGAAAGAGAAGGCCCUAUUUAU&AUAAAUAGG-CUUUCUCUUCAA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN65777_c0_g1_883_TPlot.pdf
TRINITY_DN65777_c0_g1:887	si_s888	TRINITY_DN65777_c0_g1	875	896	887	-26.80	-21.80	0.813432835820896	7.5	4-12,893-885;13-21,883-875	1-3,896-894[UP5];x-x,884-884[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	AAGAGAAGGCCCUAUUUAUGUG&AAAAUAAAUAGG-CUUUCUCUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN65777_c0_g1_887_TPlot.pdf
TRINITY_DN65777_c0_g1:888	si_s887	TRINITY_DN65777_c0_g1	876	897	888	-26.80	-20.90	0.779850746268657	8.5	5-13,893-885;14-21,883-876	1-4,897-894[UP5];x-x,884-884[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AGAGAAGGCCCUAUUUAUGUGA&AAAAAUAAAUAGG-CUUUCUCU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN65777_c0_g1_888_TPlot.pdf
TRINITY_DN65777_c0_g1:889	si_s886	TRINITY_DN65777_c0_g1	877	898	889	-26.50	-19.60	0.739622641509434	10.5	6-14,893-885;15-21,883-877	1-5,898-894[UP5];x-x,884-884[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	GAGAAGGCCCUAUUUAUGUGAC&UAAAAAUAAAUAGG-CUUUCUC	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN65777_c0_g1_889_TPlot.pdf
TRINITY_DN65782_c0_g1:1202	si_a137	TRINITY_DN65782_c0_g1	1191	1211	1202	-26.50	-17.70	0.667924528301887	9.5	2-5,1210-1207;7-9,1205-1203;12-21,1200-1191	1-1,1211-1211[UP5];6-6,1206-1206[SIL];10-11,1202-1201[SIL]	((((((((((..(((.((((.&.)))).)))..))))))))))	GCGACAGCGAGGGAUGACUAC&AUAGUAAUUAAUCGUUGUUGU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN65782_c0_g1_1202_TPlot.pdf
TRINITY_DN65784_c0_g1:824	si_a17	TRINITY_DN65784_c0_g1	813	833	824	-24.30	-16.40	0.674897119341564	7.5	3-8,831-826;10-19,824-815	1-2,833-832[UP5];9-9,825-825[SIL];20-21,814-813[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	AUUUAAAAAUAAUUAGGCUGU&AAAGCCUAUUUAUUUUUAGUU	4	0.999999214893531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN65784_c0_g1_824_TPlot.pdf
TRINITY_DN65786_c0_g1:36	si_a20	TRINITY_DN65786_c0_g1	25	44	36	-26.70	-19.00	0.711610486891386	7	2-7,43-38;9-20,37-26	1-1,44-44[UP5];8-8,x-x[BULq];21-21,25-25[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	CAGGACUAGAAGU-AGUAGGA&GCCUAUUUAUUUUUAGUUCUA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN65786_c0_g1_36_TPlot.pdf
TRINITY_DN6578_c0_g2:1073	si_a61	TRINITY_DN6578_c0_g2	1061	1081	1073	-32.90	-21.40	0.650455927051672	8	1-1,1081-1081;3-4,1079-1078;6-16,1077-1067;17-21,1065-1061	2-2,1080-1080[SIL];5-5,x-x[BULq];x-x,1066-1066[BULt]	(((((.(((((((((((-((.(&).)).)))))))))))-)))))	CAGUUCUGGAGGAGGCG-GUGG&CGACUCGCUUCUUUCA-AAUUG	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN6578_c0_g2_1073_TPlot.pdf
TRINITY_DN6578_c0_g2:1374	si_a760	TRINITY_DN6578_c0_g2	1363	1386	1374	-31.10	-22.50	0.723472668810289	11	1-7,1386-1380;8-21,1376-1363	x-x,1379-1377[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	AUCGAUCAGAAACUUGACGGGGGA&UCCUUUG---GGUUUUUGAUUGAU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN6578_c0_g2_1374_TPlot.pdf
TRINITY_DN6578_c0_g2:1375	si_a759	TRINITY_DN6578_c0_g2	1364	1387	1375	-32.60	-23.80	0.730061349693252	11	1-8,1387-1380;9-21,1376-1364	x-x,1379-1377[BULt]	(((((((((((((...((((((((&))))))))---)))))))))))))	UCGAUCAGAAACUUGACGGGGGAG&CUCCUUUG---GGUUUUUGAUUGA	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN6578_c0_g2_1375_TPlot.pdf
TRINITY_DN6578_c0_g2:1376	si_a758	TRINITY_DN6578_c0_g2	1365	1385	1376	-34.00	-24.30	0.714705882352941	7	1-5,1385-1381;7-21,1379-1365	6-6,1380-1380[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	CGAUCAGAAACUUGACGGGGG&CCUCCUUUGGGUUUUUGAUUG	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6578_c0_g2_1376_TPlot.pdf
TRINITY_DN6578_c0_g2:1377	si_a757	TRINITY_DN6578_c0_g2	1366	1386	1377	-33.10	-22.50	0.6797583081571	8	2-6,1385-1381;8-21,1379-1366	1-1,1386-1386[UP5];7-7,1380-1380[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GAUCAGAAACUUGACGGGGGA&ACCUCCUUUGGGUUUUUGAUU	2	0.999520101235378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN6578_c0_g2_1377_TPlot.pdf
TRINITY_DN6578_c0_g2:1380	si_s898	TRINITY_DN6578_c0_g2	1368	1389	1380	-30.70	-20.20	0.657980456026059	9	1-9,1389-1381;11-14,1379-1376;15-18,1374-1371	10-10,1380-1380[SIL];x-x,1375-1375[BULt];19-21,1370-1368[UP3]	...((((.((((.(((((((((&))))))))).))))-))))...	UCAGAAACUUGACGGGGGAGCC&GGCUUUCUCUUCAA-UUUCAAU	3	0.999999993471148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN6578_c0_g2_1380_TPlot.pdf
TRINITY_DN6578_c1_g1:903	si_a59	TRINITY_DN6578_c1_g1	892	911	903	-34.00	-22.30	0.655882352941176	6.5	1-4,911-908;6-10,907-903;12-21,901-892	5-5,x-x[BULq];11-11,902-902[SIL]	((((((((((.(((((-((((&)))).))))).))))))))))	AUUUGGGAGAUGUGAG-CGAU&GUCGACUCGCUUCUUUCAAAU	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN6578_c1_g1_903_TPlot.pdf
TRINITY_DN6579_c0_g1:798	si_s799	TRINITY_DN6579_c0_g1	788	807	798	-30.00	-23.20	0.773333333333333	6	2-13,806-795;15-21,794-788	1-1,807-807[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	GGUGACG-GGGUGGAAUACGU&UCGUAUUUUAUCUUCGUUACC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN6579_c0_g1_798_TPlot.pdf
TRINITY_DN6579_c0_g1:799	si_s798	TRINITY_DN6579_c0_g1	789	808	799	-29.30	-20.90	0.713310580204778	7	1-1,808-808;3-14,806-795;16-21,794-789	2-2,807-807[SIL];15-15,x-x[BULq]	((((((-((((((((((((.(&).)))))))))))).))))))	GUGACG-GGGUGGAAUACGUG&CUCGUAUUUUAUCUUCGUUAC	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN6579_c0_g1_799_TPlot.pdf
TRINITY_DN6579_c0_g1:800	si_s797	TRINITY_DN6579_c0_g1	790	810	800	-30.00	-20.90	0.696666666666667	7.5	1-3,810-808;4-15,806-795;17-21,794-790	x-x,807-807[BULt];16-16,x-x[BULq]	(((((-((((((((((((.(((&)))-)))))))))))).)))))	UGACG-GGGUGGAAUACGUGGC&GCU-CGUAUUUUAUCUUCGUUA	3	0.999243320424719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN6579_c0_g1_800_TPlot.pdf
TRINITY_DN657_c1_g1:122	si_s71	TRINITY_DN657_c1_g1	111	131	122	-25.70	-22.30	0.867704280155642	4.5	1-5,131-127;7-21,125-111	6-6,126-126[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GGGGAGGAAAAGAAAAAGAAG&CUUCUAUUUUUUUUCUUUCCU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN657_c1_g1_122_TPlot.pdf
TRINITY_DN657_c1_g1:123	si_s70	TRINITY_DN657_c1_g1	112	132	123	-25.80	-21.20	0.821705426356589	5	2-6,131-127;8-21,125-112	1-1,132-132[UP5];7-7,126-126[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GGGAGGAAAAGAAAAAGAAGA&ACUUCUAUUUUUUUUCUUUCC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN657_c1_g1_123_TPlot.pdf
TRINITY_DN65800_c0_g1:75	si_s105	TRINITY_DN65800_c0_g1	64	84	75	-30.20	-21.10	0.698675496688742	5	1-3,84-82;5-15,80-70;18-20,67-65	4-4,81-81[SIL];16-17,69-68[SIL];21-21,64-64[UP3]	.(((..(((((((((((.(((&))).)))))))))))..))).	CUUCGUUUUUCCAAUCCAAAG&CUUCGGAUUGGAAAAUAGAAA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s105_TRINITY_DN65800_c0_g1_75_TPlot.pdf
TRINITY_DN65802_c0_g1:372	si_a502	TRINITY_DN65802_c0_g1	360	381	372	-32.10	-20.90	0.651090342679128	9	1-4,381-378;6-12,376-370;13-18,368-363	5-5,377-377[SIL];x-x,369-369[BULt];19-21,362-360[UP3]	...((((((.(((((((.((((&)))).)))))))-))))))...	AUACCAAGGCAAGAUGACAGAC&GUUUUUCGUCUU-CCUUGGAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN65802_c0_g1_372_TPlot.pdf
TRINITY_DN65802_c0_g1:452	si_a326	TRINITY_DN65802_c0_g1	441	461	452	-26.20	-17.20	0.656488549618321	11	5-11,457-451;13-21,449-441	1-4,461-458[UP5];12-12,450-450[SIL]	(((((((((.(((((((....&....))))))).)))))))))	GACAAGGAAGAAGAGAAGAAG&AUGAUUUUUUUAUUCCUUGUC	3	0.999999999990747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN65802_c0_g1_452_TPlot.pdf
TRINITY_DN65802_c0_g1:454	si_s72	TRINITY_DN65802_c0_g1	444	463	454	-24.10	-16.30	0.676348547717842	6	1-4,463-460;6-16,458-448;18-21,447-444	5-5,459-459[SIL];17-17,x-x[BULq]	((((-(((((((((((.((((&)))).))))))))))).))))	AAGG-AAGAAGAGAAGAAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN65802_c0_g1_454_TPlot.pdf
TRINITY_DN65802_c0_g1:455	si_s76	TRINITY_DN65802_c0_g1	444	464	455	-23.60	-16.80	0.711864406779661	5.5	2-13,463-452;15-21,450-444	1-1,464-464[UP5];14-14,451-451[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGGAAGAAGAGAAGAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN65802_c0_g1_455_TPlot.pdf
TRINITY_DN65802_c0_g1:456	si_s75	TRINITY_DN65802_c0_g1	445	465	456	-24.00	-16.00	0.666666666666667	7	3-14,463-452;16-21,450-445	1-2,465-464[UP5];15-15,451-451[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AGGAAGAAGAGAAGAAGAAAC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN65802_c0_g1_456_TPlot.pdf
TRINITY_DN65802_c0_g1:569	si_a70	TRINITY_DN65802_c0_g1	558	583	569	-23.90	-15.60	0.652719665271967	15	1-5,583-579;6-18,573-561	x-x,578-574[BULt];19-21,560-558[UP3]	...(((((((((((((.....(((((&)))))-----)))))))))))))...	GCCGAAAAACAAUUUGUAGCUGAGGA&UCUUU-----CAAAUUGUUUUUCAUU	4	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN65802_c0_g1_569_TPlot.pdf
TRINITY_DN65805_c0_g1:1684	si_a322	TRINITY_DN65805_c0_g1	1671	1693	1684	-27.00	-17.68	0.654814814814815	9.5	2-15,1692-1679;18-21,1674-1671	1-1,1693-1693[UP5];16-17,1678-1675[AILt]	((((....((((((((((((((.&.))))))))))))))--..))))	AGGAGCUGGAAGAGAUUGUGGAG&AUCCAUGAUUUUUUU--AUUCCU	4	0.999999969905976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN65805_c0_g1_1684_TPlot.pdf
TRINITY_DN65805_c0_g1:1690	si_a316	TRINITY_DN65805_c0_g1	1679	1700	1690	-26.30	-19.90	0.756653992395437	10	1-5,1700-1696;8-21,1692-1679	6-7,1695-1693[AILt]	((((((((((((((...(((((&)))))-..))))))))))))))	GAAGAGAUUGUGGAGUUGAUCC&GGAUU-UAUCCAUGAUUUUUUU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN65805_c0_g1_1690_TPlot.pdf
TRINITY_DN65805_c0_g1:1701	si_a767	TRINITY_DN65805_c0_g1	1691	1709	1701	-30.10	-20.50	0.681063122923588	7	1-9,1709-1701;12-14,1699-1697;16-21,1696-1691	10-11,1700-1700[AILq];15-15,x-x[BULq]	((((((-(((.-(((((((((&)))))))))..))).))))))	GAGUUG-AUCC-UCGAAGACC&GGUUUUUGAUUGAUUCAACUC	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN65805_c0_g1_1701_TPlot.pdf
TRINITY_DN65805_c0_g1:1796	si_s84	TRINITY_DN65805_c0_g1	1783	1810	1796	-32.30	-21.50	0.665634674922601	14	1-7,1810-1804;8-15,1798-1791;16-21,1788-1783	x-x,1803-1799[BULt];x-x,1790-1789[BULt]	((((((..((((((((.....(((((((&)))))))-----))))))))--))))))	CGAAGACGGGGAGAAGGUUCUGGAAAGA&UCUUUCC-----UUUCUUCU--UCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN65805_c0_g1_1796_TPlot.pdf
TRINITY_DN65805_c0_g1:1863	si_a635	TRINITY_DN65805_c0_g1	1853	1872	1863	-26.10	-17.90	0.685823754789272	6	1-14,1872-1859;16-18,1858-1856	15-15,x-x[BULq];19-21,1855-1853[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	GCCGCU-GAGAAAAUCGACAU&AUGUCGAUUUUUUUGAGUAAU	2	0.999804129748348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN65805_c0_g1_1863_TPlot.pdf
TRINITY_DN65805_c0_g1:1865	si_a633	TRINITY_DN65805_c0_g1	1855	1874	1865	-26.40	-19.10	0.723484848484849	5.5	2-16,1873-1859;18-20,1858-1856	1-1,1874-1874[UP5];17-17,x-x[BULq];21-21,1855-1855[UP3]	.(((-(((((((((((((((.&.))))))))))))))).))).	CGCU-GAGAAAAUCGACAUGG&UUAUGUCGAUUUUUUUGAGUA	2	0.966966886465599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN65805_c0_g1_1865_TPlot.pdf
TRINITY_DN65823_c0_g1:1133	si_s86	TRINITY_DN65823_c0_g1	1122	1146	1133	-32.90	-22.40	0.680851063829787	14.5	3-7,1144-1140;8-19,1135-1124	1-2,1146-1145[UP5];x-x,1139-1136[BULt];20-21,1123-1122[UP3]	..((((((((((((....(((((..&..)))))----))))))))))))..	AACGAGGAAGAAGACCUCGAGGACA&UUUCCUU----UCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN65823_c0_g1_1133_TPlot.pdf
TRINITY_DN65823_c0_g1:1135	si_s84	TRINITY_DN65823_c0_g1	1124	1148	1135	-32.30	-24.00	0.743034055727554	12	1-3,1148-1146;5-9,1144-1140;10-21,1135-1124	4-4,1145-1145[SIL];x-x,1139-1136[BULt]	((((((((((((....(((((.(((&))).)))))----))))))))))))	CGAGGAAGAAGACCUCGAGGACAGG&UCUUUCCUU----UCUUCUUCUUCG	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN65823_c0_g1_1135_TPlot.pdf
TRINITY_DN65823_c0_g1:1140	si_s83	TRINITY_DN65823_c0_g1	1125	1149	1140	-30.90	-22.10	0.715210355987055	13	1-4,1149-1146;6-10,1144-1140;11-21,1135-1125	5-5,1145-1145[SIL];x-x,1139-1136[BULt]	(((((((((((....(((((.((((&)))).)))))----)))))))))))	GAGGAAGAAGACCUCGAGGACAGGG&UUCUUUCCUU----UCUUCUUCUUC	3	0.999999999992288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN65823_c0_g1_1140_TPlot.pdf
TRINITY_DN65823_c0_g1:1238	si_s92	TRINITY_DN65823_c0_g1	1226	1247	1238	-34.90	-23.50	0.673352435530086	7.5	2-16,1246-1232;17-18,1230-1229	1-1,1247-1247[UP5];x-x,1231-1231[BULt];19-21,1228-1226[UP3]	...((.(((((((((((((((.&.)))))))))))))))-))...	GCACGAAAGUGGAGAGGAAGAU&UUCUUCUUCUUCGCUU-CGGAU	4	0.99999999996403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN65823_c0_g1_1238_TPlot.pdf
TRINITY_DN65823_c0_g1:1240	si_s90	TRINITY_DN65823_c0_g1	1228	1249	1240	-35.30	-23.50	0.6657223796034	9	4-18,1246-1232;19-20,1230-1229	1-3,1249-1247[UP5];x-x,1231-1231[BULt];21-21,1228-1228[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	ACGAAAGUGGAGAGGAAGAUGU&CUUUCUUCUUCUUCGCUU-CGG	2	0.999999991384079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN65823_c0_g1_1240_TPlot.pdf
TRINITY_DN65823_c0_g1:1241	si_s89	TRINITY_DN65823_c0_g1	1229	1252	1241	-35.30	-23.08	0.653824362606232	11	1-2,1252-1251;5-19,1246-1232;20-21,1230-1229	3-4,1250-1247[AILt];x-x,1231-1231[BULt]	((.(((((((((((((((....((&))--..)))))))))))))))-))	CGAAAGUGGAGAGGAAGAUGUCGG&CC--UUUCUUCUUCUUCGCUU-CG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN65823_c0_g1_1241_TPlot.pdf
TRINITY_DN65823_c0_g1:1297	si_s68	TRINITY_DN65823_c0_g1	1283	1306	1297	-23.10	-16.12	0.697835497835498	8	1-15,1306-1292;18-21,1286-1283	16-17,1291-1287[AILt]	((((.....(((((((((((((((&)))))))))))))))---..))))	GAAGCCAGUGAAAAAUGGGAGUUG&CAACUUCUAUUUUUU---UUCUUU	2	0.999999820446701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN65823_c0_g1_1297_TPlot.pdf
TRINITY_DN65823_c0_g1:1298	si_s67	TRINITY_DN65823_c0_g1	1288	1307	1298	-25.60	-17.60	0.6875	6	1-16,1307-1292;19-20,1290-1289	17-18,1291-1291[AILq];21-21,1288-1288[UP3]	.((.-((((((((((((((((&))))))))))))))))..)).	CAGU-GAAAAAUGGGAGUUGU&GCAACUUCUAUUUUUUUUCUU	4	0.99999992536643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN65823_c0_g1_1298_TPlot.pdf
TRINITY_DN65823_c0_g1:1299	si_s66	TRINITY_DN65823_c0_g1	1289	1308	1299	-26.30	-17.80	0.67680608365019	6.5	2-17,1307-1292;20-21,1290-1289	1-1,1308-1308[UP5];18-19,1291-1291[AILq]	((.-((((((((((((((((.&.))))))))))))))))..))	AGU-GAAAAAUGGGAGUUGUC&AGCAACUUCUAUUUUUUUUCU	4	0.999999742471099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN65823_c0_g1_1299_TPlot.pdf
TRINITY_DN65823_c0_g1:1300	si_s65	TRINITY_DN65823_c0_g1	1289	1309	1300	-26.00	-17.80	0.684615384615385	9.5	3-18,1307-1292	1-2,1309-1308[UP5];19-21,1291-1289[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGUGAAAAAUGGGAGUUGUCG&UAGCAACUUCUAUUUUUUUUC	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN65823_c0_g1_1300_TPlot.pdf
TRINITY_DN65823_c0_g1:1301	si_s64	TRINITY_DN65823_c0_g1	1290	1310	1301	-24.10	-17.80	0.738589211618257	10.5	4-19,1307-1292	1-3,1310-1308[UP5];20-21,1291-1290[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUGAAAAAUGGGAGUUGUCGG&UUAGCAACUUCUAUUUUUUUU	4	0.992495399826818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN65823_c0_g1_1301_TPlot.pdf
TRINITY_DN65823_c0_g1:1303	si_s62	TRINITY_DN65823_c0_g1	1292	1312	1303	-26.50	-17.80	0.671698113207547	12	6-21,1307-1292	1-5,1312-1308[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAAAAUGGGAGUUGUCGGGG&AGUUAGCAACUUCUAUUUUUU	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN65823_c0_g1_1303_TPlot.pdf
TRINITY_DN65824_c0_g1:1073	si_s66	TRINITY_DN65824_c0_g1	1065	1082	1073	-26.30	-18.30	0.695817490494297	7.5	1-10,1082-1073;14-20,1072-1066	11-13,x-x[BULq];21-21,1065-1065[UP3]	.(((((((---((((((((((&))))))))))...))))))).	CGAAAAGA---AGAGGUUGCU&AGCAACUUCUAUUUUUUUUCU	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN65824_c0_g1_1073_TPlot.pdf
TRINITY_DN65824_c0_g1:309	si_a392	TRINITY_DN65824_c0_g1	298	318	309	-22.80	-19.40	0.850877192982456	5.5	3-21,316-298	1-2,318-317[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAACAGUUUUAUAUUCUUGUA&AUUAAGAAUAUAGAAUUGUUU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a392_TRINITY_DN65824_c0_g1_309_TPlot.pdf
TRINITY_DN65826_c0_g1:111	si_a332	TRINITY_DN65826_c0_g1	99	120	111	-30.60	-20.10	0.656862745098039	12	5-12,116-109;14-20,106-100	1-4,120-117[UP5];13-13,108-107[AILt];21-21,99-99[UP3]	.(((((((..((((((((....&....))))))))-.))))))).	GUUCGGGAAGAAGGAAUGUCGC&UUUUUAUUCCUU-GUCCCGAAA	3	0.999996237632989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN65826_c0_g1_111_TPlot.pdf
TRINITY_DN65826_c0_g1:441	si_s320	TRINITY_DN65826_c0_g1	429	450	441	-31.00	-20.40	0.658064516129032	7	1-5,450-446;7-12,444-439;14-20,436-430	6-6,445-445[SIL];13-13,438-437[AILt];21-21,429-429[UP3]	.(((((((..((((((.(((((&))))).))))))-.))))))).	GGUGUUUGCGAACAAGCAGGAU&GUCCUUCUUGUU-ACAAACAUA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN65826_c0_g1_441_TPlot.pdf
TRINITY_DN65826_c0_g1:495	si_s28	TRINITY_DN65826_c0_g1	481	504	495	-27.00	-17.60	0.651851851851852	15	2-11,503-494;15-19,487-483	1-1,504-504[UP5];12-14,493-488[AILt];20-21,482-481[UP3]	..(((((......((((((((((.&.))))))))))---...)))))..	ACGGAGAGGCUGGAGUUGCAGUCG&UGAUUGCAACU---AAAUCUUUAA	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s28_TRINITY_DN65826_c0_g1_495_TPlot.pdf
TRINITY_DN65826_c0_g1:496	si_s27	TRINITY_DN65826_c0_g1	482	505	496	-27.00	-18.90	0.7	13	1-12,505-494;16-20,487-483	13-15,493-488[AILt];21-21,482-482[UP3]	.(((((......((((((((((((&))))))))))))---...))))).	CGGAGAGGCUGGAGUUGCAGUCGA&UUGAUUGCAACU---AAAUCUUUA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN65826_c0_g1_496_TPlot.pdf
TRINITY_DN65826_c0_g1:497	si_s26	TRINITY_DN65826_c0_g1	483	506	497	-26.70	-19.70	0.737827715355805	9	1-13,506-494;17-21,487-483	14-16,493-488[AILt]	(((((......(((((((((((((&)))))))))))))---...)))))	GGAGAGGCUGGAGUUGCAGUCGAU&AUUGAUUGCAACU---AAAUCUUU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN65826_c0_g1_497_TPlot.pdf
TRINITY_DN65826_c0_g1:498	si_s25	TRINITY_DN65826_c0_g1	484	507	498	-27.10	-19.30	0.712177121771218	9.5	2-14,506-494;18-21,487-484	1-1,507-507[UP5];15-17,493-488[AILt]	((((......(((((((((((((.&.)))))))))))))---...))))	GAGAGGCUGGAGUUGCAGUCGAUC&UAUUGAUUGCAACU---AAAUCUU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN65826_c0_g1_498_TPlot.pdf
TRINITY_DN65826_c0_g1:502	si_a770	TRINITY_DN65826_c0_g1	490	511	502	-28.70	-20.70	0.721254355400697	8.5	2-12,510-500;13-19,498-492	1-1,511-511[UP5];x-x,499-499[BULt];20-21,491-490[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	CUGGAGUUGCAGUCGAUCAAGC&UUUUGAUUGAUU-CAACUCUUC	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN65826_c0_g1_502_TPlot.pdf
TRINITY_DN65826_c0_g1:503	si_a769	TRINITY_DN65826_c0_g1	491	512	503	-26.70	-20.70	0.775280898876405	8.5	3-13,510-500;14-20,498-492	1-2,512-511[UP5];x-x,499-499[BULt];21-21,491-491[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UGGAGUUGCAGUCGAUCAAGCA&UUUUUGAUUGAUU-CAACUCUU	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN65826_c0_g1_503_TPlot.pdf
TRINITY_DN65826_c0_g1:505	si_a767	TRINITY_DN65826_c0_g1	493	515	505	-30.10	-21.60	0.717607973421927	7.5	2-4,514-512;5-15,510-500;16-21,498-493	1-1,515-515[UP5];x-x,511-511[BULt];x-x,499-499[BULt]	((((((.(((((((((((.(((.&.)))-)))))))))))-))))))	GAGUUGCAGUCGAUCAAGCAGCG&GGUU-UUUGAUUGAUU-CAACUC	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN65826_c0_g1_505_TPlot.pdf
TRINITY_DN65826_c0_g1:552	si_s795	TRINITY_DN65826_c0_g1	541	561	552	-30.30	-19.82	0.654125412541254	12.5	2-8,560-554;15-21,547-541	1-1,561-561[UP5];9-14,553-548[SIL]	(((((((......(((((((.&.)))))))......)))))))	GCGAAGAAUGGCGACGGGCUG&AAGCUCGUAUUUUAUCUUCGU	3	0.999997908301714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN65826_c0_g1_552_TPlot.pdf
TRINITY_DN65826_c0_g1:869	si_a374	TRINITY_DN65826_c0_g1	858	879	869	-25.60	-17.40	0.6796875	11.5	1-4,879-876;7-17,872-862	5-6,875-873[AILt];18-21,861-858[UP3]	....(((((((((((...((((&))))-..)))))))))))....	UGGCCGAGAUCGUUUGCGGAUC&GAUC-AAAAAUGAUUUCGAAUU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN65826_c0_g1_869_TPlot.pdf
TRINITY_DN6582_c0_g1:1124	si_a26	TRINITY_DN6582_c0_g1	1113	1133	1124	-28.00	-21.80	0.778571428571429	5.5	1-13,1133-1121;16-20,1118-1114	14-15,1120-1119[SIL];21-21,1113-1113[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	AGGUCUCUGAACUAAAAGUGG&UUAUUUUUAGUUCUAAGACCG	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN6582_c0_g1_1124_TPlot.pdf
TRINITY_DN6582_c0_g1:1263	si_s76	TRINITY_DN6582_c0_g1	1252	1272	1263	-23.60	-21.30	0.902542372881356	7.5	4-20,1269-1253	1-3,1272-1270[UP5];21-21,1252-1252[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAGAGAGGAAAGAGAAAAUGC&AUUUUUUUUCUUUCCUUUCUU	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6582_c0_g1_1263_TPlot.pdf
TRINITY_DN6582_c0_g1:1264	si_s75	TRINITY_DN6582_c0_g1	1253	1273	1264	-24.00	-21.30	0.8875	8.5	5-21,1269-1253	1-4,1273-1270[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGAGAGGAAAGAGAAAAUGCA&UAUUUUUUUUCUUUCCUUUCU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6582_c0_g1_1264_TPlot.pdf
TRINITY_DN6582_c0_g1:1265	si_s74	TRINITY_DN6582_c0_g1	1254	1274	1265	-25.00	-20.20	0.808	10.5	6-21,1269-1254	1-5,1274-1270[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAGGAAAGAGAAAAUGCAG&CUAUUUUUUUUCUUUCCUUUC	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6582_c0_g1_1265_TPlot.pdf
TRINITY_DN6582_c0_g1:1267	si_s72	TRINITY_DN6582_c0_g1	1256	1278	1267	-24.10	-18.16	0.753526970954357	11.5	1-4,1278-1275;8-21,1269-1256	5-7,1274-1270[AILt]	((((((((((((((.....((((&))))--...))))))))))))))	GAGGAAAGAGAAAAUGCAGAGAA&UUCU--AUUUUUUUUCUUUCCUU	4	0.999999973411668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6582_c0_g1_1267_TPlot.pdf
TRINITY_DN6582_c0_g1:1416	si_s76	TRINITY_DN6582_c0_g1	1405	1425	1416	-23.60	-18.00	0.76271186440678	8.5	1-10,1425-1416;12-21,1414-1405	11-11,1415-1415[SIL]	((((((((((.((((((((((&)))))))))).))))))))))	AAGAGGGGGAUGGGGGGAAAU&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999999891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6582_c0_g1_1416_TPlot.pdf
TRINITY_DN6582_c0_g1:2959	si_a125	TRINITY_DN6582_c0_g1	2948	2968	2959	-25.00	-16.70	0.668	12.5	6-18,2963-2951	1-5,2968-2964[UP5];19-21,2950-2948[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUGUACUGUUGCUAUAUCUCC&UGUUUUAUAGCAAUAGUAAUU	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN6582_c0_g1_2959_TPlot.pdf
TRINITY_DN6582_c0_g1:2962	si_s348	TRINITY_DN6582_c0_g1	2951	2971	2962	-33.10	-21.70	0.655589123867069	6.5	2-10,2970-2962;12-13,2960-2959;15-19,2957-2953	1-1,2971-2971[UP5];11-11,2961-2961[SIL];14-14,2958-2958[SIL];20-21,2952-2951[UP3]	..(((((.((.(((((((((.&.))))))))).)).)))))..	UACUGUUGCUAUAUCUCCCCC&CGGGGAGAUAAAGAAAUAGAU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s348_TRINITY_DN6582_c0_g1_2962_TPlot.pdf
TRINITY_DN6582_c0_g1:3205	si_s348	TRINITY_DN6582_c0_g1	3194	3214	3205	-33.10	-21.70	0.655589123867069	6.5	2-10,3213-3205;12-13,3203-3202;15-19,3200-3196	1-1,3214-3214[UP5];11-11,3204-3204[SIL];14-14,3201-3201[SIL];20-21,3195-3194[UP3]	..(((((.((.(((((((((.&.))))))))).)).)))))..	UACUGUUGCUAUAUCUCCCCC&CGGGGAGAUAAAGAAAUAGAU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s348_TRINITY_DN6582_c0_g1_3205_TPlot.pdf
TRINITY_DN65832_c0_g1:370	si_a551	TRINITY_DN65832_c0_g1	358	379	370	-31.60	-20.80	0.658227848101266	10	3-9,377-371;12-19,368-361;20-21,359-358	1-2,379-378[UP5];10-11,370-369[SIL];x-x,360-360[BULt]	((.((((((((..(((((((..&..)))))))..))))))))-))	GGAGGAGAUAAUAAGAUGGAAG&AAUCUAUUUCUUUAUCUCC-CC	3	0.999944438983975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN65832_c0_g1_370_TPlot.pdf
TRINITY_DN65835_c0_g1:1075	si_s445	TRINITY_DN65835_c0_g1	1064	1084	1075	-21.10	-13.80	0.654028436018957	11	2-11,1083-1074;14-17,1071-1068	1-1,1084-1084[UP5];12-13,1073-1072[SIL];18-21,1067-1064[UP3]	....((((..((((((((((.&.))))))))))..))))....	UGAAGUUGGGAUAUGUGAUGC&AUAUUAUAUAUAACAACAAUU	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN65835_c0_g1_1075_TPlot.pdf
TRINITY_DN65835_c0_g1:709	si_a113	TRINITY_DN65835_c0_g1	698	718	709	-26.20	-23.20	0.885496183206107	8.5	5-20,714-699	1-4,718-715[UP5];21-21,698-698[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGUAAAACAAGCUCGUAAAAU&AAAAUACGAGCUUGUUUUAUA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN65835_c0_g1_709_TPlot.pdf
TRINITY_DN6584_c0_g1:2290	si_a410	TRINITY_DN6584_c0_g1	2278	2299	2290	-17.80	-12.40	0.696629213483146	4	2-17,2298-2283;18-21,2281-2278	1-1,2299-2299[UP5];x-x,2282-2282[BULt]	((((.((((((((((((((((.&.))))))))))))))))-))))	UUUAUUUUAAGUAUAAAUAAAU&UUUUGUUUAUAUUUAAA-UAAA	2	0.999963503280997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6584_c0_g1_2290_TPlot.pdf
TRINITY_DN6584_c0_g1:2294	si_a406	TRINITY_DN6584_c0_g1	2283	2303	2294	-19.80	-13.20	0.666666666666667	6.5	1-3,2303-2301;6-21,2298-2283	4-5,2300-2299[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	UUUAAGUAUAAAUAAAUAAGU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6584_c0_g1_2294_TPlot.pdf
TRINITY_DN6584_c0_g1:2295	si_a405	TRINITY_DN6584_c0_g1	2284	2304	2295	-19.80	-13.50	0.681818181818182	6.5	1-4,2304-2301;7-21,2298-2284	5-6,2300-2299[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	UUAAGUAUAAAUAAAUAAGUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6584_c0_g1_2295_TPlot.pdf
TRINITY_DN65851_c0_g1:299	si_a406	TRINITY_DN65851_c0_g1	288	308	299	-19.80	-13.30	0.671717171717172	5.5	1-8,308-301;10-19,299-290	9-9,300-300[SIL];20-21,289-288[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AAUAAGUAUAAAAAAAGCAAU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN65851_c0_g1_299_TPlot.pdf
TRINITY_DN65853_c0_g1:3126	si_a787	TRINITY_DN65853_c0_g1	3115	3135	3126	-26.30	-17.70	0.673003802281369	8.5	1-5,3135-3131;7-19,3129-3117	6-6,3130-3130[SIL];20-21,3116-3115[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	CCGAGAAUAGGGAAGAAGGAG&CUUCUAUUUUUCUAUUUUCCA	2	0.999999942148895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN65853_c0_g1_3126_TPlot.pdf
TRINITY_DN65856_c0_g1:117	si_a770	TRINITY_DN65856_c0_g1	105	126	117	-28.70	-18.70	0.651567944250871	8.5	2-10,125-117;12-13,115-114;16-21,110-105	1-1,126-126[UP5];11-11,116-116[SIL];14-15,113-111[AILt]	((((((...((.(((((((((.&.))))))))).))-..))))))	GAAGGGGUCGAUUCAGUCAAGG&UUUUGAUUGAUUC-AACUCUUC	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN65856_c0_g1_117_TPlot.pdf
TRINITY_DN65856_c0_g1:1255	si_s376	TRINITY_DN65856_c0_g1	1244	1263	1255	-42.50	-27.80	0.654117647058824	6	1-7,1263-1257;9-14,1256-1251;16-21,1249-1244	8-8,x-x[BULq];15-15,1250-1250[SIL]	((((((.((((((-(((((((&))))))).)))))).))))))	UGGGGCCGACAUG-GGGCGAU&AUCGCUCGCGUGUCCGCCUUA	2	0.999729288865422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN65856_c0_g1_1255_TPlot.pdf
TRINITY_DN6585_c0_g1:4184	si_s569	TRINITY_DN6585_c0_g1	4173	4196	4184	-30.60	-20.50	0.669934640522876	9	1-5,4196-4192;6-20,4188-4174	x-x,4191-4189[BULt];21-21,4173-4173[UP3]	.(((((((((((((((...(((((&)))))---))))))))))))))).	CUUUUUAUUCUUUGUUUCUCCGAA&UUCGG---GACAAGGAAUAAAAAA	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN6585_c0_g1_4184_TPlot.pdf
TRINITY_DN65862_c0_g1:139	si_a820	TRINITY_DN65862_c0_g1	128	148	139	-28.20	-18.80	0.666666666666667	8	4-20,145-129	1-3,148-146[UP5];21-21,128-128[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUUUUCUUUUCUUUUUUCAGA&GAAGAAGAAAGGAAAGAAAAA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN65862_c0_g1_139_TPlot.pdf
TRINITY_DN65865_c0_g1:247	si_a153	TRINITY_DN65865_c0_g1	236	256	247	-28.70	-22.10	0.770034843205575	8.5	1-7,256-250;9-18,248-239	8-8,249-249[SIL];19-21,238-236[UP3]	...((((((((((.(((((((&))))))).))))))))))...	CUCGAUUGGCCUUCGGACGAC&GUUGUUUUAAGGUCAAUCUAU	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN65865_c0_g1_247_TPlot.pdf
TRINITY_DN6586_c0_g1:955	si_s761	TRINITY_DN6586_c0_g1	944	964	955	-25.90	-17.60	0.67953667953668	7	1-14,964-951	15-21,950-944[UP3]	.......((((((((((((((&)))))))))))))).......	AUCAUCAAAUCGUUGUUGUUU&AAACAACAACGAUUAAUUACU	0	0.0222618317521743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN6586_c0_g1_955_TPlot.pdf
TRINITY_DN6586_c0_g1:956	si_s760	TRINITY_DN6586_c0_g1	945	965	956	-25.20	-18.50	0.734126984126984	6	1-15,965-951	16-21,950-945[UP3]	......(((((((((((((((&)))))))))))))))......	UCAUCAAAUCGUUGUUGUUUU&AAAACAACAACGAUUAAUUAC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s760_TRINITY_DN6586_c0_g1_956_TPlot.pdf
TRINITY_DN6586_c0_g1:957	si_s759	TRINITY_DN6586_c0_g1	946	966	957	-23.80	-18.50	0.777310924369748	6	2-16,965-951	1-1,966-966[UP5];17-21,950-946[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CAUCAAAUCGUUGUUGUUUUU&UAAAACAACAACGAUUAAUUA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s759_TRINITY_DN6586_c0_g1_957_TPlot.pdf
TRINITY_DN6586_c0_g1:958	si_s758	TRINITY_DN6586_c0_g1	947	967	958	-23.50	-18.50	0.787234042553192	7	3-17,965-951	1-2,967-966[UP5];18-21,950-947[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUCAAAUCGUUGUUGUUUUUG&UUAAAACAACAACGAUUAAUU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN6586_c0_g1_958_TPlot.pdf
TRINITY_DN6586_c0_g1:959	si_s757	TRINITY_DN6586_c0_g1	948	968	959	-25.10	-19.40	0.772908366533864	6	1-2,968-967;4-18,965-951	3-3,966-966[SIL];19-21,950-948[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	UCAAAUCGUUGUUGUUUUUGG&CUUAAAACAACAACGAUUAAU	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s757_TRINITY_DN6586_c0_g1_959_TPlot.pdf
TRINITY_DN6586_c0_g1:960	si_s756	TRINITY_DN6586_c0_g1	949	968	960	-27.40	-20.30	0.740875912408759	6	1-2,968-967;5-19,965-951	3-4,966-966[AILq];20-21,950-949[UP3]	..(((((((((((((((.-((&))..)))))))))))))))..	CAAAUCGUUGUUGUUUUU-GG&CCUUAAAACAACAACGAUUAA	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s756_TRINITY_DN6586_c0_g1_960_TPlot.pdf
TRINITY_DN6586_c0_g1:961	si_s755	TRINITY_DN6586_c0_g1	950	969	961	-28.10	-21.80	0.775800711743772	5	1-3,969-967;6-20,965-951	4-5,966-966[AILq];21-21,950-950[UP3]	.(((((((((((((((.-(((&)))..))))))))))))))).	AAAUCGUUGUUGUUUUU-GGU&ACCUUAAAACAACAACGAUUA	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s755_TRINITY_DN6586_c0_g1_961_TPlot.pdf
TRINITY_DN6586_c0_g1:962	si_s754	TRINITY_DN6586_c0_g1	951	970	962	-29.70	-25.30	0.851851851851852	4	1-4,970-967;7-21,965-951	5-6,966-966[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	AAUCGUUGUUGUUUUU-GGUC&GACCUUAAAACAACAACGAUU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s754_TRINITY_DN6586_c0_g1_962_TPlot.pdf
TRINITY_DN6586_c0_g1:963	si_s753	TRINITY_DN6586_c0_g1	952	971	963	-30.40	-24.50	0.805921052631579	5	2-5,970-967;8-21,965-952	1-1,971-971[UP5];6-7,966-966[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	AUCGUUGUUGUUUUU-GGUCG&UGACCUUAAAACAACAACGAU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s753_TRINITY_DN6586_c0_g1_963_TPlot.pdf
TRINITY_DN6586_c0_g1:964	si_s752	TRINITY_DN6586_c0_g1	953	972	964	-30.30	-24.60	0.811881188118812	5	1-6,972-967;9-21,965-953	7-8,966-966[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	UCGUUGUUGUUUUU-GGUCGA&UUGACCUUAAAACAACAACGA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s752_TRINITY_DN6586_c0_g1_964_TPlot.pdf
TRINITY_DN6586_c0_g1:966	si_s750	TRINITY_DN6586_c0_g1	955	974	966	-29.90	-23.10	0.77257525083612	5.5	1-8,974-967;11-21,965-955	9-10,966-966[AILq]	(((((((((((.-((((((((&))))))))..)))))))))))	GUUGUUGUUUUU-GGUCGAUU&GAUUGACCUUAAAACAACAAC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s750_TRINITY_DN6586_c0_g1_966_TPlot.pdf
TRINITY_DN65884_c0_g1:3482	si_a481	TRINITY_DN65884_c0_g1	3471	3491	3482	-25.60	-17.90	0.69921875	6	1-18,3491-3474	19-21,3473-3471[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUUGUAUUCUGUAUAAUAAUG&UAUUGUUAUAUAGAAUAUGUC	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN65884_c0_g1_3482_TPlot.pdf
TRINITY_DN65884_c0_g1:858	si_a640	TRINITY_DN65884_c0_g1	849	867	858	-24.10	-18.90	0.784232365145228	4	1-12,867-856;15-21,855-849	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	GAUGUGU--CUCAAAAAGAUC&GAUUUUUUUGAGUAAUAUAUC	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN65884_c0_g1_858_TPlot.pdf
TRINITY_DN65884_c0_g1:859	si_a639	TRINITY_DN65884_c0_g1	848	868	859	-23.60	-17.00	0.720338983050847	6.5	2-13,867-856;16-19,853-850	1-1,868-868[UP5];14-15,855-854[SIL];20-21,849-848[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	GGAUGUGUCUCAAAAAGAUCA&CGAUUUUUUUGAGUAAUAUAU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN65884_c0_g1_859_TPlot.pdf
TRINITY_DN65884_c0_g1:860	si_a638	TRINITY_DN65884_c0_g1	849	869	860	-24.40	-17.00	0.69672131147541	7.5	3-14,867-856;17-20,853-850	1-2,869-868[UP5];15-16,855-854[SIL];21-21,849-849[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	GAUGUGUCUCAAAAAGAUCAG&UCGAUUUUUUUGAGUAAUAUA	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN65884_c0_g1_860_TPlot.pdf
TRINITY_DN6588_c0_g1:1304	si_s805	TRINITY_DN6588_c0_g1	1292	1313	1304	-28.60	-18.90	0.660839160839161	10	3-6,1311-1308;8-14,1306-1300;15-20,1298-1293	1-2,1313-1312[UP5];7-7,1307-1307[SIL];x-x,1299-1299[BULt];21-21,1292-1292[UP3]	.((((((.(((((((.((((..&..)))).)))))))-)))))).	UGAGGAGAGUGACGAUGAUGCC&UUUAUCUUCGUUAC-CUUUUCU	3	0.999999999972944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6588_c0_g1_1304_TPlot.pdf
TRINITY_DN65896_c0_g1:254	si_s865	TRINITY_DN65896_c0_g1	237	263	254	-37.80	-25.20	0.666666666666667	18.5	3-10,261-254;11-18,247-240	1-2,263-262[UP5];x-x,253-248[BULt];19-21,239-237[UP3]	...((((((((......((((((((..&..))))))))------))))))))...	CCACUGAGACCUGUCACGGUAGGUCGG&UAGACCUACC------GGUCUUAGAAC	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s865_TRINITY_DN65896_c0_g1_254_TPlot.pdf
TRINITY_DN6589_c0_g1:3146	si_a471	TRINITY_DN6589_c0_g1	3135	3155	3146	-21.10	-16.20	0.767772511848341	8	2-5,3154-3151;7-19,3149-3137	1-1,3155-3155[UP5];6-6,3150-3150[SIL];20-21,3136-3135[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AAAUAACAAUAAUUGGGUGUA&AAUAUGUAAUUAUUGUUAUAU	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6589_c0_g1_3146_TPlot.pdf
TRINITY_DN6589_c1_g1:239	si_a172	TRINITY_DN6589_c1_g1	228	248	239	-31.90	-22.50	0.705329153605016	10	3-17,246-232	1-2,248-247[UP5];18-21,231-228[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCACUGUUUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN6589_c1_g1_239_TPlot.pdf
TRINITY_DN6589_c1_g1:240	si_a171	TRINITY_DN6589_c1_g1	229	249	240	-32.10	-22.50	0.700934579439252	10.5	4-18,246-232	1-3,249-247[UP5];19-21,231-229[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACUGUUUGGAUGGGUGACCG&UAUUCACCCGUCUAGAUAAUA	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN6589_c1_g1_240_TPlot.pdf
TRINITY_DN6589_c1_g1:241	si_a170	TRINITY_DN6589_c1_g1	230	250	241	-33.40	-22.50	0.673652694610778	11.5	5-19,246-232	1-4,250-247[UP5];20-21,231-230[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACUGUUUGGAUGGGUGACCGA&CUAUUCACCCGUCUAGAUAAU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN6589_c1_g1_241_TPlot.pdf
TRINITY_DN6589_c1_g1:243	si_a168	TRINITY_DN6589_c1_g1	232	260	243	-34.40	-23.00	0.668604651162791	19	2-6,259-255;7-21,246-232	1-1,260-260[UP5];x-x,254-247[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUUUGGAUGGGUGACCGAGCUUAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN6589_c1_g1_243_TPlot.pdf
TRINITY_DN658_c0_g1:1388	si_a764	TRINITY_DN658_c0_g1	1377	1397	1388	-28.90	-19.00	0.657439446366782	9	1-10,1397-1388;12-16,1386-1382;18-20,1380-1378	11-11,1387-1387[SIL];17-17,1381-1381[SIL];21-21,1377-1377[UP3]	.(((.(((((.((((((((((&)))))))))).))))).))).	AUGGUUCGGUGAAAGGCCCGG&UUGGGUUUUUGAUUGAUUCAA	2	0.999993199526285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN658_c0_g1_1388_TPlot.pdf
TRINITY_DN658_c0_g1:1389	si_a763	TRINITY_DN658_c0_g1	1378	1398	1389	-28.80	-18.90	0.65625	9.5	2-11,1397-1388;13-17,1386-1382;19-21,1380-1378	1-1,1398-1398[UP5];12-12,1387-1387[SIL];18-18,1381-1381[SIL]	(((.(((((.((((((((((.&.)))))))))).))))).)))	UGGUUCGGUGAAAGGCCCGGC&UUUGGGUUUUUGAUUGAUUCA	2	0.999999442717865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN658_c0_g1_1389_TPlot.pdf
TRINITY_DN658_c0_g1:149	si_s94	TRINITY_DN658_c0_g1	137	158	149	-35.50	-24.40	0.687323943661972	10	1-10,158-149;12-18,146-140	11-11,148-147[AILt];19-21,139-137[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	UACUCCGAAGAAGAGGAGGAGG&CUUCUUCUUC-GCUUCGGAUUG	3	0.999920012425505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN658_c0_g1_149_TPlot.pdf
TRINITY_DN658_c0_g1:152	si_s91	TRINITY_DN658_c0_g1	140	161	152	-34.70	-27.00	0.778097982708934	6	2-13,160-149;15-21,146-140	1-1,161-161[UP5];14-14,148-147[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	UCCGAAGAAGAGGAGGAGGAAG&UUUCUUCUUCUUC-GCUUCGGA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN658_c0_g1_152_TPlot.pdf
TRINITY_DN658_c0_g1:153	si_s84	TRINITY_DN658_c0_g1	142	162	153	-32.30	-25.70	0.795665634674923	6	1-6,162-157;8-21,155-142	7-7,156-156[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	CGAAGAAGAGGAGGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN658_c0_g1_153_TPlot.pdf
TRINITY_DN658_c0_g1:154	si_s83	TRINITY_DN658_c0_g1	143	163	154	-30.90	-24.60	0.796116504854369	5.5	1-7,163-157;9-21,155-143	8-8,156-156[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	GAAGAAGAGGAGGAGGAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN658_c0_g1_154_TPlot.pdf
TRINITY_DN658_c0_g1:155	si_s82	TRINITY_DN658_c0_g1	144	164	155	-28.90	-21.70	0.750865051903114	6	1-8,164-157;10-21,155-144	9-9,156-156[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AAGAAGAGGAGGAGGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	3	0.999999995277542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN658_c0_g1_155_TPlot.pdf
TRINITY_DN658_c0_g1:156	si_s806	TRINITY_DN658_c0_g1	144	165	156	-28.60	-18.60	0.65034965034965	12.5	4-8,162-158;10-11,156-155;13-21,152-144	1-3,165-163[UP5];9-9,157-157[SIL];12-12,154-153[AILt]	(((((((((..((.(((((...&...))))).))-.)))))))))	AAGAAGAGGAGGAGGAAGAAGU&UUAUCUUCGUU-ACCUUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN658_c0_g1_156_TPlot.pdf
TRINITY_DN658_c0_g1:157	si_s68	TRINITY_DN658_c0_g1	146	167	157	-23.10	-15.30	0.662337662337662	11	3-8,165-160;10-21,157-146	1-2,167-166[UP5];9-9,159-158[AILt]	((((((((((((..((((((..&..))))))-.))))))))))))	GAAGAGGAGGAGGAAGAAGUCG&CAACUUCU-AUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN658_c0_g1_157_TPlot.pdf
TRINITY_DN658_c0_g1:1594	si_s83	TRINITY_DN658_c0_g1	1583	1604	1594	-30.90	-27.70	0.896440129449838	4.5	1-7,1604-1598;8-21,1596-1583	x-x,1597-1597[BULt]	((((((((((((((.(((((((&)))))))-))))))))))))))	GAAGAAGAAGAGAGAGGAAGAG&UUCUUUC-CUUUCUUCUUCUUC	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN658_c0_g1_1594_TPlot.pdf
TRINITY_DN658_c0_g1:1595	si_s82	TRINITY_DN658_c0_g1	1584	1605	1595	-28.90	-25.10	0.868512110726644	6	2-8,1604-1598;9-21,1596-1584	1-1,1605-1605[UP5];x-x,1597-1597[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	AAGAAGAAGAGAGAGGAAGAGG&UUUCUUUC-CUUUCUUCUUCUU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN658_c0_g1_1595_TPlot.pdf
TRINITY_DN658_c0_g1:1596	si_s81	TRINITY_DN658_c0_g1	1585	1606	1596	-28.90	-25.80	0.892733564013841	6	1-9,1606-1598;10-21,1596-1585	x-x,1597-1597[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	AGAAGAAGAGAGAGGAAGAGGA&UUUUCUUUC-CUUUCUUCUUCU	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN658_c0_g1_1596_TPlot.pdf
TRINITY_DN658_c0_g1:1598	si_s80	TRINITY_DN658_c0_g1	1586	1607	1598	-28.20	-24.90	0.882978723404255	6	1-10,1607-1598;11-21,1596-1586	x-x,1597-1597[BULt]	(((((((((((.((((((((((&))))))))))-)))))))))))	GAAGAAGAGAGAGGAAGAGGAG&UUUUUCUUUC-CUUUCUUCUUC	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN658_c0_g1_1598_TPlot.pdf
TRINITY_DN658_c0_g1:1599	si_s79	TRINITY_DN658_c0_g1	1587	1608	1599	-26.20	-22.10	0.84351145038168	7.5	2-11,1607-1598;12-21,1596-1587	1-1,1608-1608[UP5];x-x,1597-1597[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAGAAGAGAGAGGAAGAGGAGG&UUUUUUCUUUC-CUUUCUUCUU	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN658_c0_g1_1599_TPlot.pdf
TRINITY_DN658_c0_g1:1600	si_s78	TRINITY_DN658_c0_g1	1588	1609	1600	-26.20	-22.80	0.870229007633588	7.5	1-12,1609-1598;13-21,1596-1588	x-x,1597-1597[BULt]	(((((((((.((((((((((((&))))))))))))-)))))))))	AGAAGAGAGAGGAAGAGGAGGA&UUUUUUUCUUUC-CUUUCUUCU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN658_c0_g1_1600_TPlot.pdf
TRINITY_DN658_c0_g1:1601	si_s77	TRINITY_DN658_c0_g1	1589	1610	1601	-25.50	-22.40	0.87843137254902	6.5	1-13,1610-1598;14-21,1596-1589	x-x,1597-1597[BULt]	((((((((.(((((((((((((&)))))))))))))-))))))))	GAAGAGAGAGGAAGAGGAGGAA&UUUUUUUUCUUUC-CUUUCUUC	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN658_c0_g1_1601_TPlot.pdf
TRINITY_DN658_c0_g1:1602	si_s76	TRINITY_DN658_c0_g1	1590	1611	1602	-23.60	-19.20	0.813559322033898	7	2-14,1610-1598;15-21,1596-1590	1-1,1611-1611[UP5];x-x,1597-1597[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AAGAGAGAGGAAGAGGAGGAAG&AUUUUUUUUCUUUC-CUUUCUU	4	0.999995553922631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN658_c0_g1_1602_TPlot.pdf
TRINITY_DN658_c0_g1:1603	si_s69	TRINITY_DN658_c0_g1	1592	1613	1603	-23.40	-18.80	0.803418803418803	9.5	2-7,1612-1607;9-21,1604-1592	1-1,1613-1613[UP5];8-8,1606-1605[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	GAGAGAGGAAGAGGAGGAAGUC&AACUUCU-AUUUUUUUUCUUUC	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN658_c0_g1_1603_TPlot.pdf
TRINITY_DN658_c0_g1:1604	si_s74	TRINITY_DN658_c0_g1	1592	1613	1604	-25.00	-17.00	0.68	11	4-16,1610-1598;17-21,1596-1592	1-3,1613-1611[UP5];x-x,1597-1597[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAGAGAGGAAGAGGAGGAAGUC&CUAUUUUUUUUCUUUC-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN658_c0_g1_1604_TPlot.pdf
TRINITY_DN658_c0_g1:1610	si_s68	TRINITY_DN658_c0_g1	1599	1620	1610	-23.10	-18.00	0.779220779220779	9	1-7,1620-1614;10-21,1610-1599	8-9,1613-1611[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	GAAGAGGAGGAAGUCGAAGUUG&CAACUUC-UAUUUUUUUUCUUU	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN658_c0_g1_1610_TPlot.pdf
TRINITY_DN658_c0_g1:1611	si_s67	TRINITY_DN658_c0_g1	1600	1621	1611	-25.60	-16.90	0.66015625	9	2-8,1620-1614;11-21,1610-1600	1-1,1621-1621[UP5];9-10,1613-1611[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	AAGAGGAGGAAGUCGAAGUUGA&GCAACUUC-UAUUUUUUUUCUU	3	0.999999999999732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN658_c0_g1_1611_TPlot.pdf
TRINITY_DN658_c0_g1:1625	si_s92	TRINITY_DN658_c0_g1	1610	1634	1625	-34.90	-23.40	0.670487106017192	12	1-12,1634-1623;13-19,1618-1612	x-x,1622-1619[BULt];20-21,1611-1610[UP3]	..(((((((....((((((((((((&))))))))))))----)))))))..	AGUCGAAGUUGAUGAGGAAGAAGAA&UUCUUCUUCUUC----GCUUCGGAU	3	0.99999999998526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN658_c0_g1_1625_TPlot.pdf
TRINITY_DN658_c0_g1:1627	si_s90	TRINITY_DN658_c0_g1	1612	1636	1627	-35.30	-24.00	0.679886685552408	8	2-14,1635-1623;15-21,1618-1612	1-1,1636-1636[UP5];x-x,1622-1619[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	UCGAAGUUGAUGAGGAAGAAGAAGA&CUUUCUUCUUCUUC----GCUUCGG	3	0.999999999888394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN658_c0_g1_1627_TPlot.pdf
TRINITY_DN658_c0_g1:1633	si_s87	TRINITY_DN658_c0_g1	1623	1649	1633	-32.90	-21.40	0.650455927051672	17	1-6,1649-1644;7-17,1636-1626;19-21,1625-1623	x-x,1643-1637[BULt];18-18,x-x[BULq]	(((-(((((((((((.......((((((&))))))-------))))))))))).)))	GAG-GAAGAAGAAGACGAUGAAGAGGAG&UUCCUU-------UCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN658_c0_g1_1633_TPlot.pdf
TRINITY_DN658_c0_g1:1636	si_s84	TRINITY_DN658_c0_g1	1625	1651	1636	-32.30	-21.80	0.674922600619195	15	1-6,1651-1646;7-9,1644-1642;10-20,1636-1626	x-x,1645-1645[BULt];x-x,1641-1637[BULt];21-21,1625-1625[UP3]	.(((((((((((.....(((.((((((&))))))-)))-----))))))))))).	GGAAGAAGAAGACGAUGAAGAGGAGGA&UCUUUC-CUU-----UCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN658_c0_g1_1636_TPlot.pdf
TRINITY_DN658_c0_g1:1643	si_s82	TRINITY_DN658_c0_g1	1627	1653	1643	-28.90	-19.10	0.660899653979239	15	2-8,1652-1646;9-11,1644-1642;12-21,1636-1627	1-1,1653-1653[UP5];x-x,1645-1645[BULt];x-x,1641-1637[BULt]	((((((((((.....(((.(((((((.&.)))))))-)))-----))))))))))	AAGAAGAAGACGAUGAAGAGGAGGAAG&UUUCUUUC-CUU-----UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN658_c0_g1_1643_TPlot.pdf
TRINITY_DN658_c0_g1:1644	si_s81	TRINITY_DN658_c0_g1	1628	1654	1644	-28.90	-19.90	0.688581314878893	15	1-9,1654-1646;10-12,1644-1642;13-21,1636-1628	x-x,1645-1645[BULt];x-x,1641-1637[BULt]	(((((((((.....(((.(((((((((&)))))))))-)))-----)))))))))	AGAAGAAGACGAUGAAGAGGAGGAAGA&UUUUCUUUC-CUU-----UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN658_c0_g1_1644_TPlot.pdf
TRINITY_DN658_c0_g1:1646	si_s80	TRINITY_DN658_c0_g1	1629	1655	1646	-28.20	-19.50	0.691489361702128	10	1-10,1655-1646;11-13,1644-1642;14-21,1636-1629	x-x,1645-1645[BULt];x-x,1641-1637[BULt]	((((((((.....(((.((((((((((&))))))))))-)))-----))))))))	GAAGAAGACGAUGAAGAGGAGGAAGAA&UUUUUCUUUC-CUU-----UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN658_c0_g1_1646_TPlot.pdf
TRINITY_DN658_c0_g1:1648	si_s78	TRINITY_DN658_c0_g1	1631	1657	1648	-26.20	-17.30	0.66030534351145	11	1-12,1657-1646;13-15,1644-1642;16-21,1636-1631	x-x,1645-1645[BULt];x-x,1641-1637[BULt]	((((((.....(((.((((((((((((&))))))))))))-)))-----))))))	AGAAGACGAUGAAGAGGAGGAAGAAGA&UUUUUUUCUUUC-CUU-----UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN658_c0_g1_1648_TPlot.pdf
TRINITY_DN658_c0_g1:1649	si_s77	TRINITY_DN658_c0_g1	1632	1658	1649	-25.50	-16.70	0.654901960784314	10	1-13,1658-1646;14-16,1644-1642;17-21,1636-1632	x-x,1645-1645[BULt];x-x,1641-1637[BULt]	(((((.....(((.(((((((((((((&)))))))))))))-)))-----)))))	GAAGACGAUGAAGAGGAGGAAGAAGAA&UUUUUUUUCUUUC-CUU-----UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN658_c0_g1_1649_TPlot.pdf
TRINITY_DN658_c0_g1:1651	si_s75	TRINITY_DN658_c0_g1	1640	1660	1651	-24.00	-16.90	0.704166666666667	6	1-15,1660-1646;17-20,1644-1641	16-16,1645-1645[SIL];21-21,1640-1640[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	UGAAGAGGAGGAAGAAGAAUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN658_c0_g1_1651_TPlot.pdf
TRINITY_DN658_c0_g1:1652	si_s74	TRINITY_DN658_c0_g1	1640	1661	1652	-25.00	-17.00	0.68	6.5	2-16,1660-1646;17-20,1644-1641	1-1,1661-1661[UP5];x-x,1645-1645[BULt];21-21,1640-1640[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	UGAAGAGGAGGAAGAAGAAUAA&CUAUUUUUUUUCUUUC-CUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN658_c0_g1_1652_TPlot.pdf
TRINITY_DN658_c0_g1:1653	si_s73	TRINITY_DN658_c0_g1	1641	1662	1653	-24.00	-17.00	0.708333333333333	7.5	3-17,1660-1646;18-21,1644-1641	1-2,1662-1661[UP5];x-x,1645-1645[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GAAGAGGAGGAAGAAGAAUAAA&UCUAUUUUUUUUCUUUC-CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN658_c0_g1_1653_TPlot.pdf
TRINITY_DN658_c0_g1:1654	si_s72	TRINITY_DN658_c0_g1	1642	1663	1654	-24.10	-15.90	0.659751037344398	9	4-18,1660-1646;19-21,1644-1642	1-3,1663-1661[UP5];x-x,1645-1645[BULt]	(((.(((((((((((((((...&...)))))))))))))))-)))	AAGAGGAGGAAGAAGAAUAAAU&UUCUAUUUUUUUUCUUUC-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN658_c0_g1_1654_TPlot.pdf
TRINITY_DN658_c0_g1:1895	si_s501	TRINITY_DN658_c0_g1	1887	1904	1895	-22.60	-15.10	0.668141592920354	4	1-12,1904-1893;16-21,1892-1887	13-15,x-x[BULq]	((((((---((((((((((((&))))))))))))...))))))	GUAUGG---UGUUUUGUUUAU&AUAAACAAAACAAUUCUAUAU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s501_TRINITY_DN658_c0_g1_1895_TPlot.pdf
TRINITY_DN658_c0_g1:1896	si_s500	TRINITY_DN658_c0_g1	1883	1905	1896	-22.80	-15.96	0.7	5.5	1-13,1905-1893;17-21,1887-1883	14-16,1892-1888[AILt]	(((((.....(((((((((((((&)))))))))))))--...)))))	UAUGGUAUGGUGUUUUGUUUAUA&UAUAAACAAAACA--AUUCUAUA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN658_c0_g1_1896_TPlot.pdf
TRINITY_DN658_c0_g1:1897	si_s499	TRINITY_DN658_c0_g1	1884	1906	1897	-22.60	-15.76	0.697345132743363	5.5	1-14,1906-1893;18-21,1887-1884	15-17,1892-1888[AILt]	((((.....((((((((((((((&))))))))))))))--...))))	AUGGUAUGGUGUUUUGUUUAUAU&AUAUAAACAAAACA--AUUCUAU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN658_c0_g1_1897_TPlot.pdf
TRINITY_DN658_c0_g1:1898	si_s498	TRINITY_DN658_c0_g1	1885	1907	1898	-22.40	-15.06	0.672321428571429	6.5	2-15,1906-1893;19-21,1887-1885	1-1,1907-1907[UP5];16-18,1892-1888[AILt]	(((.....((((((((((((((.&.))))))))))))))--...)))	UGGUAUGGUGUUUUGUUUAUAUG&AAUAUAAACAAAACA--AUUCUA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN658_c0_g1_1898_TPlot.pdf
TRINITY_DN658_c0_g1:1899	si_s497	TRINITY_DN658_c0_g1	1888	1908	1899	-22.00	-14.70	0.668181818181818	8	3-16,1906-1893	1-2,1908-1907[UP5];17-21,1892-1888[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUGGUGUUUUGUUUAUAUGU&AAAUAUAAACAAAACAAUUCU	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s497_TRINITY_DN658_c0_g1_1899_TPlot.pdf
TRINITY_DN658_c0_g1:1900	si_s496	TRINITY_DN658_c0_g1	1889	1909	1900	-21.70	-14.70	0.67741935483871	9	4-17,1906-1893	1-3,1909-1907[UP5];18-21,1892-1889[UP3]	....((((((((((((((...&...))))))))))))))....	AUGGUGUUUUGUUUAUAUGUU&UAAAUAUAAACAAAACAAUUC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s496_TRINITY_DN658_c0_g1_1900_TPlot.pdf
TRINITY_DN658_c0_g1:1901	si_s495	TRINITY_DN658_c0_g1	1890	1910	1901	-19.80	-14.70	0.742424242424242	10	5-18,1906-1893	1-4,1910-1907[UP5];19-21,1892-1890[UP3]	...((((((((((((((....&....))))))))))))))...	UGGUGUUUUGUUUAUAUGUUA&UUAAAUAUAAACAAAACAAUU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN658_c0_g1_1901_TPlot.pdf
TRINITY_DN658_c0_g1:1902	si_s494	TRINITY_DN658_c0_g1	1891	1911	1902	-19.80	-14.70	0.742424242424242	11	6-19,1906-1893	1-5,1911-1907[UP5];20-21,1892-1891[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGUGUUUUGUUUAUAUGUUAG&UUUAAAUAUAAACAAAACAAU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN658_c0_g1_1902_TPlot.pdf
TRINITY_DN658_c0_g1:1903	si_s493	TRINITY_DN658_c0_g1	1892	1913	1903	-19.80	-15.90	0.803030303030303	5	1-6,1913-1908;7-20,1906-1893	x-x,1907-1907[BULt];21-21,1892-1892[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	GUGUUUUGUUUAUAUGUUAGGU&AUUUAA-AUAUAAACAAAACAA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN658_c0_g1_1903_TPlot.pdf
TRINITY_DN658_c0_g1:1904	si_s492	TRINITY_DN658_c0_g1	1893	1914	1904	-20.10	-15.70	0.781094527363184	5	2-7,1913-1908;8-21,1906-1893	1-1,1914-1914[UP5];x-x,1907-1907[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UGUUUUGUUUAUAUGUUAGGUU&UAUUUAA-AUAUAAACAAAACA	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN658_c0_g1_1904_TPlot.pdf
TRINITY_DN658_c0_g1:1905	si_s491	TRINITY_DN658_c0_g1	1894	1915	1905	-19.50	-14.30	0.733333333333333	7	3-8,1913-1908;9-21,1906-1894	1-2,1915-1914[UP5];x-x,1907-1907[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	GUUUUGUUUAUAUGUUAGGUUU&UUAUUUAA-AUAUAAACAAAAC	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN658_c0_g1_1905_TPlot.pdf
TRINITY_DN658_c0_g1:213	si_s87	TRINITY_DN658_c0_g1	201	221	213	-32.90	-22.10	0.671732522796353	8	2-5,220-217;8-18,215-205;19-21,203-201	1-1,221-221[UP5];6-7,216-216[AILq];x-x,204-204[BULt]	(((.(((((((((((.-((((.&.))))..)))))))))))-)))	AAGUCGAAGAAGGAGC-GGGAG&UUCCUUUCUUCUUCUUCG-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN658_c0_g1_213_TPlot.pdf
TRINITY_DN658_c0_g1:214	si_s86	TRINITY_DN658_c0_g1	202	222	214	-32.90	-22.70	0.689969604863222	8	1-6,222-217;9-19,215-205;20-21,203-202	7-8,216-216[AILq];x-x,204-204[BULt]	((.(((((((((((.-((((((&))))))..)))))))))))-))	AGUCGAAGAAGGAGC-GGGAGA&UUUCCUUUCUUCUUCUUCG-CU	3	0.999999999999924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN658_c0_g1_214_TPlot.pdf
TRINITY_DN658_c0_g1:216	si_s84	TRINITY_DN658_c0_g1	205	224	216	-32.30	-21.50	0.665634674922601	9.5	3-8,222-217;11-21,215-205	1-2,224-223[UP5];9-10,216-216[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	CGAAGAAGGAGC-GGGAGAUC&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN658_c0_g1_216_TPlot.pdf
TRINITY_DN658_c0_g1:31	si_s182	TRINITY_DN658_c0_g1	20	40	31	-32.60	-25.50	0.782208588957055	9	2-10,39-31;13-17,28-24	1-1,40-40[UP5];11-12,30-29[SIL];18-21,23-20[UP3]	....(((((..(((((((((.&.)))))))))..)))))....	UAGAAAUCGGGACUCGGGCAG&AUGCCCGAGUAACGAUUAUUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN658_c0_g1_31_TPlot.pdf
TRINITY_DN658_c0_g1:37	si_s176	TRINITY_DN658_c0_g1	26	47	37	-36.70	-25.90	0.705722070844687	9	1-3,47-45;6-7,42-41;8-16,39-31;19-21,28-26	4-5,44-43[SIL];x-x,40-40[BULt];17-18,30-29[SIL]	(((..(((((((((.((..(((&)))..))-)))))))))..)))	UCGGGACUCGGGCAGUCGCUGC&GUAAAGA-UGCCCGAGUAACGA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s176_TRINITY_DN658_c0_g1_37_TPlot.pdf
TRINITY_DN658_c0_g1:39	si_s174	TRINITY_DN658_c0_g1	28	49	39	-39.00	-26.20	0.671794871794872	10	2-5,48-45;8-9,42-41;10-18,39-31;21-21,28-28	1-1,49-49[UP5];6-7,44-43[SIL];x-x,40-40[BULt];19-20,30-29[SIL]	(..(((((((((.((..((((.&.))))..))-)))))))))..)	GGGACUCGGGCAGUCGCUGCCG&GGGUAAAGA-UGCCCGAGUAAC	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN658_c0_g1_39_TPlot.pdf
TRINITY_DN658_c0_g1:450	si_s69	TRINITY_DN658_c0_g1	439	459	450	-23.40	-15.90	0.67948717948718	8.5	3-7,457-453;9-20,451-440	1-2,459-458[UP5];8-8,452-452[SIL];21-21,439-439[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGAAGAAAAGAAACAGAGGGA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN658_c0_g1_450_TPlot.pdf
TRINITY_DN658_c0_g1:451	si_s68	TRINITY_DN658_c0_g1	440	460	451	-23.10	-15.90	0.688311688311688	9	4-8,457-453;10-21,451-440	1-3,460-458[UP5];9-9,452-452[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAAAAGAAACAGAGGGAC&CAACUUCUAUUUUUUUUCUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN658_c0_g1_451_TPlot.pdf
TRINITY_DN658_c0_g1:632	si_a68	TRINITY_DN658_c0_g1	622	641	632	-25.40	-17.60	0.692913385826772	6	1-10,641-632;12-19,631-624	11-11,x-x[BULq];20-21,623-622[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	CAAAGAGCAA-UUGGAAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.999999640571353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN658_c0_g1_632_TPlot.pdf
TRINITY_DN658_c0_g1:634	si_a66	TRINITY_DN658_c0_g1	624	643	634	-26.70	-17.80	0.666666666666667	6	3-12,641-632;14-21,631-624	1-2,643-642[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AAGAGCAA-UUGGAAGAAGAA&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999999151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN658_c0_g1_634_TPlot.pdf
TRINITY_DN658_c0_g1:73	si_a48	TRINITY_DN658_c0_g1	56	82	73	-41.90	-27.60	0.658711217183771	10	2-13,81-70;14-19,63-58	1-1,82-82[UP5];x-x,69-64[BULt];20-21,57-56[UP3]	..((((((......((((((((((((.&.))))))))))))------))))))..	CAGAGUUGUGUGGUGCUCCUAGACCUC&UAGGUCUAGGAGU------CGACUCGC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a48_TRINITY_DN658_c0_g1_73_TPlot.pdf
TRINITY_DN658_c0_g1:74	si_a47	TRINITY_DN658_c0_g1	57	83	74	-41.20	-27.60	0.669902912621359	11	3-14,81-70;15-20,63-58	1-2,83-82[UP5];x-x,69-64[BULt];21-21,57-57[UP3]	.((((((......((((((((((((..&..))))))))))))------)))))).	AGAGUUGUGUGGUGCUCCUAGACCUCU&GUAGGUCUAGGAGU------CGACUCG	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN658_c0_g1_74_TPlot.pdf
TRINITY_DN658_c0_g1:75	si_a46	TRINITY_DN658_c0_g1	58	83	75	-42.10	-27.90	0.66270783847981	9.5	1-2,83-82;4-15,81-70;16-21,63-58	3-3,x-x[BULq];x-x,69-64[BULt]	((((((......((((((((((((-((&)).))))))))))))------))))))	GAGUUGUGUGGUGCUCCUAGACCU-CU&GGUAGGUCUAGGAGU------CGACUC	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN658_c0_g1_75_TPlot.pdf
TRINITY_DN658_c0_g1:806	si_a66	TRINITY_DN658_c0_g1	796	815	806	-26.70	-17.80	0.666666666666667	6	3-12,813-804;14-21,803-796	1-2,815-814[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AAGAACAG-UUGGAAGAAGAA&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999997757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN658_c0_g1_806_TPlot.pdf
TRINITY_DN658_c0_g1:813	si_a789	TRINITY_DN658_c0_g1	803	822	813	-24.80	-16.40	0.661290322580645	6	1-3,822-820;5-11,818-812;13-21,811-803	4-4,819-819[SIL];12-12,x-x[BULq]	(((((((((-(((((((.(((&))).))))))).)))))))))	GUUGGAAGA-AGAAAAGAAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.99999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN658_c0_g1_813_TPlot.pdf
TRINITY_DN65906_c0_g1:1002	si_s63	TRINITY_DN65906_c0_g1	991	1011	1002	-25.80	-18.40	0.713178294573643	11	1-12,1011-1000	13-21,999-991[UP3]	.........((((((((((((&)))))))))))).........	UGCGUCUCUGAGGUUGCUGAC&GUUAGCAACUUCUAUUUUUUU	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN65906_c0_g1_1002_TPlot.pdf
TRINITY_DN65906_c0_g1:1003	si_s62	TRINITY_DN65906_c0_g1	992	1012	1003	-26.50	-19.50	0.735849056603774	10	1-13,1012-1000	14-21,999-992[UP3]	........(((((((((((((&)))))))))))))........	GCGUCUCUGAGGUUGCUGACU&AGUUAGCAACUUCUAUUUUUU	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN65906_c0_g1_1003_TPlot.pdf
TRINITY_DN65906_c0_g1:1004	si_s61	TRINITY_DN65906_c0_g1	993	1013	1004	-26.50	-19.70	0.743396226415094	10	2-14,1012-1000	1-1,1013-1013[UP5];15-21,999-993[UP3]	.......(((((((((((((.&.))))))))))))).......	CGUCUCUGAGGUUGCUGACUC&AAGUUAGCAACUUCUAUUUUU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN65906_c0_g1_1004_TPlot.pdf
TRINITY_DN65906_c0_g1:1006	si_s59	TRINITY_DN65906_c0_g1	995	1015	1006	-29.20	-19.70	0.674657534246575	11.5	4-16,1012-1000	1-3,1015-1013[UP5];17-21,999-995[UP3]	.....(((((((((((((...&...))))))))))))).....	UCUCUGAGGUUGCUGACUCCC&UCAAGUUAGCAACUUCUAUUU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN65906_c0_g1_1006_TPlot.pdf
TRINITY_DN65906_c0_g1:1007	si_s58	TRINITY_DN65906_c0_g1	996	1016	1007	-29.30	-19.70	0.672354948805461	12.5	5-17,1012-1000	1-4,1016-1013[UP5];18-21,999-996[UP3]	....(((((((((((((....&....)))))))))))))....	CUCUGAGGUUGCUGACUCCCU&UUCAAGUUAGCAACUUCUAUU	2	0.851067302754252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN65906_c0_g1_1007_TPlot.pdf
TRINITY_DN65906_c0_g1:1008	si_s57	TRINITY_DN65906_c0_g1	997	1017	1008	-29.30	-19.70	0.672354948805461	13.5	6-18,1012-1000	1-5,1017-1013[UP5];19-21,999-997[UP3]	...(((((((((((((.....&.....)))))))))))))...	UCUGAGGUUGCUGACUCCCUC&UUUCAAGUUAGCAACUUCUAU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN65906_c0_g1_1008_TPlot.pdf
TRINITY_DN65906_c0_g1:1009	si_s56	TRINITY_DN65906_c0_g1	998	1018	1009	-29.20	-19.70	0.674657534246575	14.5	7-19,1012-1000	1-6,1018-1013[UP5];20-21,999-998[UP3]	..(((((((((((((......&......)))))))))))))..	CUGAGGUUGCUGACUCCCUCA&AUUUCAAGUUAGCAACUUCUA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN65906_c0_g1_1009_TPlot.pdf
TRINITY_DN65906_c0_g1:1127	si_a196	TRINITY_DN65906_c0_g1	1119	1136	1127	-32.80	-22.32	0.680487804878049	7.5	1-13,1136-1124;19-21,1121-1119	14-18,1123-1122[AILq]	(((..---(((((((((((((&))))))))))))).....)))	CGGAG---UGGUGGACAGGGA&UCCCUGUUCACUAAUAAAUCG	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a196_TRINITY_DN65906_c0_g1_1127_TPlot.pdf
TRINITY_DN65906_c0_g1:1128	si_a195	TRINITY_DN65906_c0_g1	1117	1137	1128	-31.40	-22.10	0.703821656050955	9.5	2-14,1136-1124	1-1,1137-1137[UP5];15-21,1123-1117[UP3]	.......(((((((((((((.&.))))))))))))).......	CACGGAGUGGUGGACAGGGAU&UUCCCUGUUCACUAAUAAAUC	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a195_TRINITY_DN65906_c0_g1_1128_TPlot.pdf
TRINITY_DN65906_c0_g1:1129	si_a194	TRINITY_DN65906_c0_g1	1118	1138	1129	-29.40	-22.10	0.751700680272109	10.5	3-15,1136-1124	1-2,1138-1137[UP5];16-21,1123-1118[UP3]	......(((((((((((((..&..)))))))))))))......	ACGGAGUGGUGGACAGGGAUC&UUUCCCUGUUCACUAAUAAAU	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN65906_c0_g1_1129_TPlot.pdf
TRINITY_DN65906_c0_g1:1131	si_a192	TRINITY_DN65906_c0_g1	1120	1140	1131	-31.90	-22.10	0.692789968652038	12.5	5-17,1136-1124	1-4,1140-1137[UP5];18-21,1123-1120[UP3]	....(((((((((((((....&....)))))))))))))....	GGAGUGGUGGACAGGGAUCUG&UCUUUCCCUGUUCACUAAUAA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN65906_c0_g1_1131_TPlot.pdf
TRINITY_DN65906_c0_g1:1132	si_a191	TRINITY_DN65906_c0_g1	1121	1141	1132	-32.00	-22.10	0.690625	13	6-18,1136-1124	1-5,1141-1137[UP5];19-21,1123-1121[UP3]	...(((((((((((((.....&.....)))))))))))))...	GAGUGGUGGACAGGGAUCUGG&AUCUUUCCCUGUUCACUAAUA	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN65906_c0_g1_1132_TPlot.pdf
TRINITY_DN65906_c0_g1:1133	si_a190	TRINITY_DN65906_c0_g1	1122	1142	1133	-32.00	-22.10	0.690625	14	7-19,1136-1124	1-6,1142-1137[UP5];20-21,1123-1122[UP3]	..(((((((((((((......&......)))))))))))))..	AGUGGUGGACAGGGAUCUGGU&UAUCUUUCCCUGUUCACUAAU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a190_TRINITY_DN65906_c0_g1_1133_TPlot.pdf
TRINITY_DN65906_c0_g1:1135	si_a188	TRINITY_DN65906_c0_g1	1124	1144	1135	-32.00	-21.90	0.684375	16	9-21,1136-1124	1-8,1144-1137[UP5]	(((((((((((((........&........)))))))))))))	UGGUGGACAGGGAUCUGGUCG&AAUAUCUUUCCCUGUUCACUA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN65906_c0_g1_1135_TPlot.pdf
TRINITY_DN65906_c0_g1:1172	si_a635	TRINITY_DN65906_c0_g1	1161	1181	1172	-26.10	-17.20	0.659003831417624	9	1-11,1181-1171;13-14,1169-1168;16-19,1166-1163	12-12,1170-1170[SIL];15-15,1167-1167[SIL];20-21,1162-1161[UP3]	..((((.((.(((((((((((&))))))))))).)).))))..	GCUGCUGAGCAAGAUCGGCGU&AUGUCGAUUUUUUUGAGUAAU	4	0.999999999997041	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN65906_c0_g1_1172_TPlot.pdf
TRINITY_DN65906_c0_g1:1180	si_a627	TRINITY_DN65906_c0_g1	1169	1190	1180	-29.50	-19.30	0.654237288135593	12.5	1-4,1190-1187;7-19,1183-1171	5-6,1186-1184[AILt];20-21,1170-1169[UP3]	..(((((((((((((...((((&))))-..)))))))))))))..	GCAAGAUCGGCGUGACAGUGCC&GGCG-UAUUAUGUCGAUUUUUU	4	0.999999866969761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN65906_c0_g1_1180_TPlot.pdf
TRINITY_DN65906_c0_g1:1243	si_a409	TRINITY_DN65906_c0_g1	1232	1252	1243	-19.50	-12.90	0.661538461538462	14	1-14,1252-1239	15-21,1238-1232[UP3]	.......((((((((((((((&)))))))))))))).......	AUCCCCUGGUGUGGACGGAGC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999999986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN65906_c0_g1_1243_TPlot.pdf
TRINITY_DN65906_c0_g1:1248	si_a404	TRINITY_DN65906_c0_g1	1237	1257	1248	-21.70	-14.30	0.658986175115207	13.5	4-19,1254-1239	1-3,1257-1255[UP5];20-21,1238-1237[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUGGUGUGGACGGAGCAGCUG&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN65906_c0_g1_1248_TPlot.pdf
TRINITY_DN65906_c0_g1:1249	si_a403	TRINITY_DN65906_c0_g1	1238	1258	1249	-22.00	-14.30	0.65	14.5	5-20,1254-1239	1-4,1258-1255[UP5];21-21,1238-1238[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGUGUGGACGGAGCAGCUGA&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN65906_c0_g1_1249_TPlot.pdf
TRINITY_DN65906_c0_g1:709	si_s375	TRINITY_DN65906_c0_g1	694	718	709	-44.10	-29.28	0.663945578231293	10.5	1-10,718-709;12-15,707-704;17-20,698-695	11-11,708-708[SIL];16-16,703-699[AILt];21-21,694-694[UP3]	.((((.....((((.((((((((((&)))))))))).))))----.)))).	CAGGCUAUCCGGCAGGCGGGCGGUC&GAUCGCUCGCGUGUC----CGCCUU	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN65906_c0_g1_709_TPlot.pdf
TRINITY_DN65906_c0_g1:713	si_s371	TRINITY_DN65906_c0_g1	703	722	713	-43.20	-28.20	0.652777777777778	7	2-3,721-720;5-14,718-709;16-17,707-706;19-21,705-703	1-1,722-722[UP5];4-4,719-719[SIL];15-15,708-708[SIL];18-18,x-x[BULq]	(((-((.((((((((((.((.&.)).)))))))))).)).)))	CGG-CAGGCGGGCGGUCCGUG&AACCGAUCGCUCGCGUGUCCG	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN65906_c0_g1_713_TPlot.pdf
TRINITY_DN65906_c0_g1:715	si_s369	TRINITY_DN65906_c0_g1	704	724	715	-42.00	-27.30	0.65	10	4-5,721-720;7-16,718-709;18-21,707-704	1-3,724-722[UP5];6-6,719-719[SIL];17-17,708-708[SIL]	((((.((((((((((.((...&...)).)))))))))).))))	GGCAGGCGGGCGGUCCGUGCU&UGAACCGAUCGCUCGCGUGUC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN65906_c0_g1_715_TPlot.pdf
TRINITY_DN65909_c0_g1:1074	si_s73	TRINITY_DN65909_c0_g1	1063	1084	1074	-24.00	-16.50	0.6875	8	1-3,1084-1082;5-7,1079-1077;9-20,1075-1064	4-4,1081-1080[AILt];8-8,1076-1076[SIL];21-21,1063-1063[UP3]	.((((((((((((.(((..(((&)))-.))).)))))))))))).	CAAGGAAAGAAAAUGAAGAAGA&UCU-AUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN65909_c0_g1_1074_TPlot.pdf
TRINITY_DN65909_c0_g1:543	si_a764	TRINITY_DN65909_c0_g1	533	552	543	-28.90	-19.80	0.685121107266436	7	2-5,551-548;8-13,545-540;15-21,539-533	1-1,552-552[UP5];6-7,547-546[SIL];14-14,x-x[BULq]	(((((((-((((((..((((.&.))))..)))))).)))))))	UUGAAUC-AUCAGAUCCCCAU&UUGGGUUUUUGAUUGAUUCAA	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN65909_c0_g1_543_TPlot.pdf
TRINITY_DN65909_c0_g1:874	si_a783	TRINITY_DN65909_c0_g1	863	883	874	-24.70	-16.40	0.663967611336032	11	3-3,881-881;5-18,879-866	1-2,883-882[UP5];4-4,880-880[SIL];19-21,865-863[UP3]	...((((((((((((((.(..&..).))))))))))))))...	GGCUAGAAAGAUGGGAGCGGA&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN65909_c0_g1_874_TPlot.pdf
TRINITY_DN6590_c1_g1:165	si_s18	TRINITY_DN6590_c1_g1	150	174	165	-27.50	-18.56	0.674909090909091	13	3-12,172-163;15-21,156-150	1-2,174-173[UP5];13-14,162-157[AILt]	(((((((......((((((((((..&..))))))))))----..)))))))	AGUUGCACAGUUGCAAUAUAGUAGA&AUUACUAUAUUG----AUUGCAACU	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN6590_c1_g1_165_TPlot.pdf
TRINITY_DN65911_c0_g1:284	si_a91	TRINITY_DN65911_c0_g1	274	293	284	-28.50	-20.00	0.701754385964912	10	6-18,288-276;20-21,275-274	1-5,293-289[UP5];19-19,x-x[BULq]	((-(((((((((((((.....&.....))))))))))))).))	UC-UCGUUACCUUUUCGUAUU&AUUAAGAAAAGGUAACGAAGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a91_TRINITY_DN65911_c0_g1_284_TPlot.pdf
TRINITY_DN65927_c0_g1:1765	si_a529	TRINITY_DN65927_c0_g1	1754	1777	1765	-43.20	-28.50	0.659722222222222	12	1-4,1777-1774;7-8,1771-1770;9-20,1766-1755	5-6,1773-1772[SIL];x-x,1769-1767[BULt];21-21,1754-1754[UP3]	.((((((((((((...((..((((&))))..))---)))))))))))).	CGCUGAUCGCUCGACUCGGAUCCG&CGGACACG---CGAGCGAUCGGUU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a529_TRINITY_DN65927_c0_g1_1765_TPlot.pdf
TRINITY_DN65927_c0_g1:1770	si_a527	TRINITY_DN65927_c0_g1	1756	1779	1770	-47.30	-34.60	0.731501057082452	10.5	1-6,1779-1774;9-10,1771-1770;11-21,1766-1756	7-8,1773-1772[SIL];x-x,1769-1767[BULt]	(((((((((((...((..((((((&))))))..))---)))))))))))	CUGAUCGCUCGACUCGGAUCCGCC&GGCGGACACG---CGAGCGAUCGG	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a527_TRINITY_DN65927_c0_g1_1770_TPlot.pdf
TRINITY_DN65927_c0_g1:1771	si_a526	TRINITY_DN65927_c0_g1	1757	1780	1771	-45.60	-31.60	0.692982456140351	11.5	2-7,1779-1774;10-11,1771-1770;12-21,1766-1757	1-1,1780-1780[UP5];8-9,1773-1772[SIL];x-x,1769-1767[BULt]	((((((((((...((..((((((.&.))))))..))---))))))))))	UGAUCGCUCGACUCGGAUCCGCCG&AGGCGGACACG---CGAGCGAUCG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a526_TRINITY_DN65927_c0_g1_1771_TPlot.pdf
TRINITY_DN65927_c0_g1:1773	si_a524	TRINITY_DN65927_c0_g1	1759	1782	1773	-42.50	-27.80	0.654117647058824	12	4-9,1779-1774;12-13,1771-1770;14-21,1766-1759	1-3,1782-1780[UP5];10-11,1773-1772[SIL];x-x,1769-1767[BULt]	((((((((...((..((((((...&...))))))..))---))))))))	AUCGCUCGACUCGGAUCCGCCGUG&UAAGGCGGACACG---CGAGCGAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a524_TRINITY_DN65927_c0_g1_1773_TPlot.pdf
TRINITY_DN65927_c0_g1:2037	si_s721	TRINITY_DN65927_c0_g1	2026	2049	2037	-32.90	-21.60	0.656534954407295	13	1-4,2049-2046;7-9,2043-2041;10-20,2037-2027	5-6,2045-2044[SIL];x-x,2040-2038[BULt];21-21,2026-2026[UP3]	.(((((((((((...(((..((((&))))..)))---))))))))))).	AGUCUGGGUGAUGAGAUCGCUCCC&GGGAAAGAU---AUUAUCUAGACG	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s721_TRINITY_DN65927_c0_g1_2037_TPlot.pdf
TRINITY_DN65927_c0_g1:2041	si_s720	TRINITY_DN65927_c0_g1	2027	2050	2041	-32.10	-21.40	0.666666666666667	12.5	2-5,2049-2046;8-10,2043-2041;11-21,2037-2027	1-1,2050-2050[UP5];6-7,2045-2044[SIL];x-x,2040-2038[BULt]	(((((((((((...(((..((((.&.))))..)))---)))))))))))	GUCUGGGUGAUGAGAUCGCUCCCC&AGGGAAAGAU---AUUAUCUAGAC	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s720_TRINITY_DN65927_c0_g1_2041_TPlot.pdf
TRINITY_DN65933_c0_g1:635	si_a145	TRINITY_DN65933_c0_g1	625	644	635	-28.10	-19.10	0.679715302491103	6.5	1-5,644-640;7-17,638-628;19-21,627-625	6-6,639-639[SIL];18-18,x-x[BULq]	(((-(((((((((((.(((((&))))).))))))))))).)))	ACC-UGGAACGACAGAGAUUG&UAAUCGUUGUUGUUUUAAGGU	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN65933_c0_g1_635_TPlot.pdf
TRINITY_DN65933_c0_g1:638	si_a142	TRINITY_DN65933_c0_g1	627	647	638	-23.50	-15.70	0.668085106382979	11.5	4-8,644-640;10-20,638-628	1-3,647-645[UP5];9-9,639-639[SIL];21-21,627-627[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUGGAACGACAGAGAUUGCCA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN65933_c0_g1_638_TPlot.pdf
TRINITY_DN65938_c0_g1:1414	si_s69	TRINITY_DN65938_c0_g1	1394	1423	1414	-23.40	-17.10	0.730769230769231	21.5	1-12,1423-1412;13-21,1402-1394	x-x,1411-1403[BULt]	(((((((((.........((((((((((((&))))))))))))---------)))))))))	GGAAGAAAAAUGCUUGCUGAAGUAGGAGUU&AACUUCUAUUUU---------UUUUCUUUC	4	0.999999999962514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN65938_c0_g1_1414_TPlot.pdf
TRINITY_DN65938_c0_g1:1415	si_s68	TRINITY_DN65938_c0_g1	1395	1424	1415	-23.10	-17.70	0.766233766233766	12	1-13,1424-1412;14-21,1402-1395	x-x,1411-1403[BULt]	((((((((.........(((((((((((((&)))))))))))))---------))))))))	GAAGAAAAAUGCUUGCUGAAGUAGGAGUUG&CAACUUCUAUUUU---------UUUUCUUU	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN65938_c0_g1_1415_TPlot.pdf
TRINITY_DN65938_c0_g1:1765	si_a21	TRINITY_DN65938_c0_g1	1754	1773	1765	-24.30	-15.90	0.654320987654321	8.5	2-7,1772-1767;9-20,1766-1755	1-1,1773-1773[UP5];8-8,x-x[BULq];21-21,1754-1754[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AUAGGACUAGAAA-GAGUGGU&CCUAUUUAUUUUUAGUUCUAA	2	0.999988093684528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN65938_c0_g1_1765_TPlot.pdf
TRINITY_DN65938_c0_g1:729	si_s25	TRINITY_DN65938_c0_g1	718	738	729	-27.10	-18.00	0.664206642066421	10	3-15,736-724	1-2,738-737[UP5];16-21,723-718[UP3]	......(((((((((((((..&..)))))))))))))......	CAUAGCUAGUUGCAGUCAACA&UAUUGAUUGCAACUAAAUCUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN65938_c0_g1_729_TPlot.pdf
TRINITY_DN65938_c0_g1:732	si_s22	TRINITY_DN65938_c0_g1	721	741	732	-26.70	-18.00	0.674157303370786	13	6-18,736-724	1-5,741-737[UP5];19-21,723-721[UP3]	...(((((((((((((.....&.....)))))))))))))...	AGCUAGUUGCAGUCAACAAGA&CUAUAUUGAUUGCAACUAAAU	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN65938_c0_g1_732_TPlot.pdf
TRINITY_DN65938_c0_g1:733	si_s21	TRINITY_DN65938_c0_g1	722	742	733	-27.40	-18.00	0.656934306569343	14	7-19,736-724	1-6,742-737[UP5];20-21,723-722[UP3]	..(((((((((((((......&......)))))))))))))..	GCUAGUUGCAGUCAACAAGAU&ACUAUAUUGAUUGCAACUAAA	2	0.937681141211856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN65938_c0_g1_733_TPlot.pdf
TRINITY_DN65938_c0_g1:841	si_s89	TRINITY_DN65938_c0_g1	828	850	841	-35.30	-23.10	0.654390934844193	6.5	2-15,849-836;16-19,833-830	1-1,850-850[UP5];x-x,835-834[BULt];20-21,829-828[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	AAAAGCCAGAGGAAGAAGAAGGA&CCUUUCUUCUUCUUC--GCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN65938_c0_g1_841_TPlot.pdf
TRINITY_DN65938_c0_g1:842	si_s88	TRINITY_DN65938_c0_g1	829	851	842	-34.80	-23.10	0.663793103448276	7.5	3-16,849-836;17-20,833-830	1-2,851-850[UP5];x-x,835-834[BULt];21-21,829-829[UP3]	.((((..((((((((((((((..&..))))))))))))))--)))).	AAAGCCAGAGGAAGAAGAAGGAU&UCCUUUCUUCUUCUUC--GCUUC	2	0.999999999616312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN65938_c0_g1_842_TPlot.pdf
TRINITY_DN65938_c0_g1:843	si_s87	TRINITY_DN65938_c0_g1	830	851	843	-32.90	-23.20	0.70516717325228	5.5	2-6,850-846;8-17,845-836;18-21,833-830	1-1,851-851[UP5];7-7,x-x[BULq];x-x,835-834[BULt]	((((..((((((((((-(((((.&.))))).))))))))))--))))	AAGCCAGAGGAAGAAG-AAGGAU&UUCCUUUCUUCUUCUUC--GCUU	2	0.999997455977433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN65938_c0_g1_843_TPlot.pdf
TRINITY_DN65938_c0_g1:844	si_s86	TRINITY_DN65938_c0_g1	831	852	844	-32.90	-22.30	0.677811550151976	7.5	3-7,850-846;9-18,845-836;19-21,833-831	1-2,852-851[UP5];8-8,x-x[BULq];x-x,835-834[BULt]	(((..((((((((((-(((((..&..))))).))))))))))--)))	AGCCAGAGGAAGAAG-AAGGAUU&UUUCCUUUCUUCUUCUUC--GCU	2	0.999999999903619	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN65938_c0_g1_844_TPlot.pdf
TRINITY_DN65938_c0_g1:845	si_s73	TRINITY_DN65938_c0_g1	835	854	845	-24.00	-16.00	0.666666666666667	6.5	1-2,854-853;4-15,851-840;17-21,839-835	3-3,852-852[SIL];16-16,x-x[BULq]	(((((-((((((((((((.((&)).)))))))))))).)))))	AGAGG-AAGAAGAAGGAUUGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN65938_c0_g1_845_TPlot.pdf
TRINITY_DN65938_c0_g1:846	si_s83	TRINITY_DN65938_c0_g1	836	855	846	-30.90	-23.40	0.757281553398058	6.5	1-3,855-853;6-10,850-846;12-21,845-836	4-5,852-851[SIL];11-11,x-x[BULq]	((((((((((-(((((..(((&)))..))))).))))))))))	GAGGAAGAAG-AAGGAUUGAA&UUCUUUCCUUUCUUCUUCUUC	2	0.999210483188021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN65938_c0_g1_846_TPlot.pdf
TRINITY_DN65938_c0_g1:847	si_s82	TRINITY_DN65938_c0_g1	837	856	847	-28.90	-20.40	0.705882352941176	7.5	2-4,855-853;7-11,850-846;13-21,845-837	1-1,856-856[UP5];5-6,852-851[SIL];12-12,x-x[BULq]	(((((((((-(((((..(((.&.)))..))))).)))))))))	AGGAAGAAG-AAGGAUUGAAU&UUUCUUUCCUUUCUUCUUCUU	2	0.999999999991055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN65938_c0_g1_847_TPlot.pdf
TRINITY_DN65938_c0_g1:848	si_s81	TRINITY_DN65938_c0_g1	838	857	848	-28.90	-19.60	0.678200692041523	8.5	3-5,855-853;8-12,850-846;14-21,845-838	1-2,857-856[UP5];6-7,852-851[SIL];13-13,x-x[BULq]	((((((((-(((((..(((..&..)))..))))).))))))))	GGAAGAAG-AAGGAUUGAAUA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN65938_c0_g1_848_TPlot.pdf
TRINITY_DN65938_c0_g1:849	si_s80	TRINITY_DN65938_c0_g1	839	858	849	-28.20	-18.50	0.656028368794326	10	4-6,855-853;9-13,850-846;15-21,845-839	1-3,858-856[UP5];7-8,852-851[SIL];14-14,x-x[BULq]	(((((((-(((((..(((...&...)))..))))).)))))))	GAAGAAG-AAGGAUUGAAUAU&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN65938_c0_g1_849_TPlot.pdf
TRINITY_DN65938_c0_g1:953	si_s410	TRINITY_DN65938_c0_g1	942	964	953	-28.10	-19.48	0.693238434163701	11	1-6,964-959;9-19,954-944	7-8,958-955[AILt];20-21,943-942[UP3]	..(((((((((((....((((((&))))))--..)))))))))))..	CAGGAGUAUGUCGACUAUUUCGU&ACGAAA--AACGACAUAUUCUAU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s410_TRINITY_DN65938_c0_g1_953_TPlot.pdf
TRINITY_DN6594_c0_g2:1576	si_s63	TRINITY_DN6594_c0_g2	1565	1587	1576	-25.80	-17.00	0.65891472868217	8.5	1-4,1587-1584;5-9,1582-1578;10-21,1576-1565	x-x,1583-1583[BULt];x-x,1577-1577[BULt]	((((((((((((.(((((.((((&))))-)))))-))))))))))))	AGAAGGAUAGAGCGUUGUAUAGC&GUUA-GCAAC-UUCUAUUUUUUU	4	0.999999955453596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN6594_c0_g2_1576_TPlot.pdf
TRINITY_DN6594_c0_g2:1578	si_s62	TRINITY_DN6594_c0_g2	1566	1588	1578	-26.50	-17.60	0.664150943396226	8.5	1-5,1588-1584;6-10,1582-1578;11-21,1576-1566	x-x,1583-1583[BULt];x-x,1577-1577[BULt]	(((((((((((.(((((.(((((&)))))-)))))-)))))))))))	GAAGGAUAGAGCGUUGUAUAGCU&AGUUA-GCAAC-UUCUAUUUUUU	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN6594_c0_g2_1578_TPlot.pdf
TRINITY_DN6594_c0_g2:1614	si_s605	TRINITY_DN6594_c0_g2	1603	1623	1614	-27.50	-18.60	0.676363636363636	7.5	3-19,1621-1605	1-2,1623-1622[UP5];20-21,1604-1603[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GUAUUUAAGAGAGAUUCGUGU&AAGCGAAUCUUUUUUAAAUCC	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN6594_c0_g2_1614_TPlot.pdf
TRINITY_DN65950_c0_g1:107	si_a885	TRINITY_DN65950_c0_g1	96	116	107	-25.60	-17.40	0.6796875	8	2-13,115-104;15-19,102-98	1-1,116-116[UP5];14-14,103-103[SIL];20-21,97-96[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AGUGUUGGUGUAUUGGUUGUU&UGCAAUCAAUAUAGUAAUAAU	0	0.0521241852189711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN65950_c0_g1_107_TPlot.pdf
TRINITY_DN6596_c0_g1:558	si_a412	TRINITY_DN6596_c0_g1	547	567	558	-18.30	-14.50	0.792349726775956	5	1-4,567-564;7-20,561-548	5-6,563-562[SIL];21-21,547-547[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AAUUUAUUUAAAUAUUUACAA&UUGUUUAUAUUUAAAUAAAUA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN6596_c0_g1_558_TPlot.pdf
TRINITY_DN6596_c0_g1:560	si_a410	TRINITY_DN6596_c0_g1	549	569	560	-17.80	-14.70	0.825842696629213	5	1-6,569-564;9-21,561-549	7-8,563-562[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	UUUAUUUAAAUAUUUACAAGA&UUUUGUUUAUAUUUAAAUAAA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6596_c0_g1_560_TPlot.pdf
TRINITY_DN65984_c0_g1:667	si_s489	TRINITY_DN65984_c0_g1	656	676	667	-17.90	-12.40	0.692737430167598	6.5	1-16,676-661	17-21,660-656[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUAAGUUGUAUUUAAAUAAGU&AUUUAUUUAAAUAUAAACAAA	4	0.994930149310453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN65984_c0_g1_667_TPlot.pdf
TRINITY_DN65984_c0_g1:671	si_s485	TRINITY_DN65984_c0_g1	660	680	671	-18.10	-14.50	0.801104972375691	5.5	3-20,678-661	1-2,680-679[UP5];21-21,660-660[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUUGUAUUUAAAUAAGUAUCC&CUAUAUUUAUUUAAAUAUAAA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN65984_c0_g1_671_TPlot.pdf
TRINITY_DN65984_c0_g1:672	si_s484	TRINITY_DN65984_c0_g1	661	681	672	-20.50	-14.30	0.697560975609756	6.5	4-21,678-661	1-3,681-679[UP5]	((((((((((((((((((...&...))))))))))))))))))	UUGUAUUUAAAUAAGUAUCCU&CCUAUAUUUAUUUAAAUAUAA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN65984_c0_g1_672_TPlot.pdf
TRINITY_DN65997_c0_g1:1647	si_s8	TRINITY_DN65997_c0_g1	1636	1656	1647	-21.30	-15.38	0.72206572769953	10	1-9,1656-1648;13-21,1644-1636	10-12,1647-1645[SIL]	(((((((((...(((((((((&)))))))))...)))))))))	AGUGUAGUACCUGUAAGUGGU&AUUACUUAUUAUUACUAUAUU	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN65997_c0_g1_1647_TPlot.pdf
TRINITY_DN65997_c0_g1:202	si_s75	TRINITY_DN65997_c0_g1	191	211	202	-24.00	-18.10	0.754166666666667	6.5	1-17,211-195	18-21,194-191[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUAUGGGGAAGAAAAAGAAUG&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999894971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN65997_c0_g1_202_TPlot.pdf
TRINITY_DN65999_c0_g1:1106	si_s811	TRINITY_DN65999_c0_g1	1095	1115	1106	-26.40	-20.40	0.772727272727273	8	2-16,1114-1100	1-1,1115-1115[UP5];17-21,1099-1095[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UAAACAAGAAGAGGUAACGGU&UUCGUUACCUUUUCUUAAUAA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN65999_c0_g1_1106_TPlot.pdf
TRINITY_DN65999_c0_g1:1135	si_a56	TRINITY_DN65999_c0_g1	1120	1144	1135	-38.90	-26.10	0.670951156812339	8	2-11,1143-1134;12-14,1132-1130;15-20,1126-1121	1-1,1144-1144[UP5];x-x,1133-1133[BULt];x-x,1129-1127[BULt];21-21,1120-1120[UP3]	.((((((...(((.((((((((((.&.))))))))))-)))---)))))).	AGAAAGAAUCAGCGGAGUCGACUUA&GGAGUCGACUC-GCU---UCUUUCA	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN65999_c0_g1_1135_TPlot.pdf
TRINITY_DN65999_c0_g1:518	si_a142	TRINITY_DN65999_c0_g1	507	527	518	-23.50	-17.00	0.723404255319149	15.5	7-19,521-509	1-6,527-522[UP5];20-21,508-507[UP3]	..(((((((((((((......&......)))))))))))))..	UGAGAGCAGCAGCGAAAGUGA&AAUUAAUCGUUGUUGUUUUAA	2	0.985472190984285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN65999_c0_g1_518_TPlot.pdf
TRINITY_DN65999_c0_g1:519	si_a141	TRINITY_DN65999_c0_g1	508	528	519	-23.80	-17.00	0.714285714285714	16.5	8-20,521-509	1-7,528-522[UP5];21-21,508-508[UP3]	.(((((((((((((.......&.......))))))))))))).	GAGAGCAGCAGCGAAAGUGAU&UAAUUAAUCGUUGUUGUUUUA	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN65999_c0_g1_519_TPlot.pdf
TRINITY_DN65999_c0_g1:949	si_a68	TRINITY_DN65999_c0_g1	938	958	949	-25.40	-17.90	0.704724409448819	6	1-9,958-950;12-17,947-942;19-21,940-938	10-11,949-948[SIL];18-18,941-941[SIL]	(((.((((((..(((((((((&)))))))))..)))))).)))	UGAUAAACAAAAUGAAAGAGG&CUUCUUUCAAAUUGUUUUUCA	0	0.230608737149986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN65999_c0_g1_949_TPlot.pdf
TRINITY_DN65_c0_g1:242	si_a548	TRINITY_DN65_c0_g1	231	251	242	-27.20	-18.30	0.672794117647059	8	1-17,251-235	18-21,234-231[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUUUUGGAGAAAUGGGUUGGA&UUCAAUCUAUUUCUUUAUCUC	3	0.998818777940926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN65_c0_g1_242_TPlot.pdf
TRINITY_DN65_c0_g1:502	si_a473	TRINITY_DN65_c0_g1	491	511	502	-23.00	-15.20	0.660869565217391	5.5	2-14,510-498;17-21,495-491	1-1,511-511[UP5];15-16,497-496[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UUAUACCACAAUGAUUGCAUC&UAUGUAAUUAUUGUUAUAUAG	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN65_c0_g1_502_TPlot.pdf
TRINITY_DN66002_c0_g1:1569	si_a606	TRINITY_DN66002_c0_g1	1558	1578	1569	-32.60	-21.40	0.656441717791411	8	3-12,1576-1567;15-16,1565-1564;17-20,1562-1559	1-2,1578-1577[UP5];13-14,1566-1566[AILq];x-x,1563-1563[BULt];21-21,1558-1558[UP3]	.((((.((.-((((((((((..&..))))))))))..))-)))).	AAGUCAGAG-GGAGUUGCGAUG&UUUCGCAAUUCCAAUC-GACUA	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN66002_c0_g1_1569_TPlot.pdf
TRINITY_DN66002_c0_g1:1570	si_a605	TRINITY_DN66002_c0_g1	1559	1579	1570	-32.20	-21.10	0.65527950310559	9	4-13,1576-1567;16-17,1565-1564;18-21,1562-1559	1-3,1579-1577[UP5];14-15,1566-1566[AILq];x-x,1563-1563[BULt]	((((.((.-((((((((((...&...))))))))))..))-))))	AGUCAGAG-GGAGUUGCGAUGG&UUUUCGCAAUUCCAAUC-GACU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN66002_c0_g1_1570_TPlot.pdf
TRINITY_DN66002_c0_g1:1581	si_a177	TRINITY_DN66002_c0_g1	1564	1590	1581	-32.90	-21.70	0.659574468085106	20	1-11,1590-1580;16-21,1569-1564	12-15,1579-1570[AILt]	((((((..........(((((((((((&)))))))))))------....))))))	GAGGGAGUUGCGAUGGGUCUAGAUGGG&CCCGUCUAGAU------AAUAUCUUUC	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a177_TRINITY_DN66002_c0_g1_1581_TPlot.pdf
TRINITY_DN66005_c0_g1:18	si_a546	TRINITY_DN66005_c0_g1	4	27	18	-28.60	-20.32	0.71048951048951	6	1-14,27-14;17-21,8-4	15-16,13-9[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN66005_c0_g1_18_TPlot.pdf
TRINITY_DN66008_c0_g1:709	si_s76	TRINITY_DN66008_c0_g1	698	718	709	-23.60	-16.00	0.677966101694915	11.5	5-18,714-701	1-4,718-715[UP5];19-21,700-698[UP3]	...((((((((((((((....&....))))))))))))))...	ACAAGAGGAGAGAAAAACACU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN66008_c0_g1_709_TPlot.pdf
TRINITY_DN6600_c0_g1:648	si_s743	TRINITY_DN6600_c0_g1	636	657	648	-29.00	-19.00	0.655172413793103	7	1-2,657-656;4-7,654-651;9-12,649-646;13-20,644-637	3-3,655-655[SIL];8-8,650-650[SIL];x-x,645-645[BULt];21-21,636-636[UP3]	.((((((((.((((.((((.((&)).)))).))))-)))))))).	CUUUAAGGUGCAAUGUAUUGAC&GUGAAUAGAUUG-ACCUUAAAA	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN6600_c0_g1_648_TPlot.pdf
TRINITY_DN6600_c0_g1:731	si_a899	TRINITY_DN6600_c0_g1	720	740	731	-18.70	-12.40	0.663101604278075	9.5	1-6,740-735;9-17,732-724	7-8,734-733[SIL];18-21,723-720[UP3]	....(((((((((..((((((&))))))..)))))))))....	AACCUAUAUUGCUGUUUAUUG&UAAUAAUAAGUAAUAUAAAAA	2	0.987172347561372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN6600_c0_g1_731_TPlot.pdf
TRINITY_DN6601_c0_g1:1213	si_a641	TRINITY_DN6601_c0_g1	1202	1222	1213	-23.60	-17.70	0.75	5	2-12,1221-1211;15-21,1208-1202	1-1,1222-1222[UP5];13-14,1210-1209[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	CGAUAUACAACUCAAAGGAAA&AUUUUUUUGAGUAAUAUAUCG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN6601_c0_g1_1213_TPlot.pdf
TRINITY_DN6601_c0_g1:2292	si_a784	TRINITY_DN6601_c0_g1	2281	2305	2292	-24.70	-16.60	0.672064777327935	12	2-8,2304-2298;9-19,2293-2283	1-1,2305-2305[UP5];x-x,2297-2294[BULt];20-21,2282-2281[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	CUAGUGGAAAAAUUUUAAGAAGAGA&ACUCUUCU----AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6601_c0_g1_2292_TPlot.pdf
TRINITY_DN66023_c0_g1:417	si_a441	TRINITY_DN66023_c0_g1	405	427	417	-29.30	-19.20	0.655290102389078	5.5	1-5,427-423;6-15,421-412;16-21,410-405	x-x,422-422[BULt];x-x,411-411[BULt]	((((((.((((((((((.(((((&)))))-))))))))))-))))))	GACGAUAUAUUUCAUAUCCCAAU&GUUGG-AUAUGAGAUA-AUUGUU	3	0.998156041740224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN66023_c0_g1_417_TPlot.pdf
TRINITY_DN66030_c0_g1:714	si_a454	TRINITY_DN66030_c0_g1	702	723	714	-21.30	-14.20	0.666666666666667	3.5	1-10,723-714;11-15,712-708;17-21,706-702	x-x,713-713[BULt];16-16,707-707[SIL]	(((((.(((((.((((((((((&))))))))))-))))).)))))	UAUUAGAUAUAUACAACAAUUG&UAAUUGUUGU-UAUAUAUAAUA	2	0.999901218111531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN66030_c0_g1_714_TPlot.pdf
TRINITY_DN6604_c0_g1:2283	si_a599	TRINITY_DN6604_c0_g1	2272	2295	2283	-30.40	-20.00	0.657894736842105	13.5	2-4,2294-2292;7-9,2289-2287;10-21,2283-2272	1-1,2295-2295[UP5];5-6,2291-2290[SIL];x-x,2286-2284[BULt]	((((((((((((...(((..(((.&.)))..)))---))))))))))))	UUGGGAUUGCGAUGGGAGCGCUGG&ACAGAAUUU---UCGCAAUUCCAA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN6604_c0_g1_2283_TPlot.pdf
TRINITY_DN6604_c0_g1:2426	si_a33	TRINITY_DN6604_c0_g1	2414	2436	2426	-37.80	-24.80	0.656084656084656	9.5	1-4,2436-2433;5-6,2431-2430;9-18,2427-2418;19-21,2416-2414	x-x,2432-2432[BULt];7-8,2429-2428[SIL];x-x,2417-2417[BULt]	(((.((((((((((..((.((((&))))-))..))))))))))-)))	GGCGCUGCCGGUCUGCGAGGCUG&UAGU-UCUAAGACCGGUAG-GUC	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a33_TRINITY_DN6604_c0_g1_2426_TPlot.pdf
TRINITY_DN6604_c0_g1:2644	si_s630	TRINITY_DN6604_c0_g1	2631	2657	2644	-35.60	-24.00	0.674157303370786	13	1-6,2657-2652;7-16,2647-2638;17-19,2636-2634;20-21,2632-2631	x-x,2651-2648[BULt];x-x,2637-2637[BULt];x-x,2633-2633[BULt]	((.(((.((((((((((....((((((&))))))----))))))))))-)))-))	GCUGAGCCGCCUGCGAAUUUCAAGGUC&GAUCUU----UUCGUAGGCG-UUU-GC	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN6604_c0_g1_2644_TPlot.pdf
TRINITY_DN6604_c0_g1:2645	si_s629	TRINITY_DN6604_c0_g1	2634	2658	2645	-34.60	-24.50	0.708092485549133	14	1-7,2658-2652;8-17,2647-2638	x-x,2651-2648[BULt];18-21,2637-2634[UP3]	....((((((((((....(((((((&)))))))----))))))))))....	GAGCCGCCUGCGAAUUUCAAGGUCG&CGAUCUU----UUCGUAGGCGUUUG	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN6604_c0_g1_2645_TPlot.pdf
TRINITY_DN6604_c0_g1:2646	si_s628	TRINITY_DN6604_c0_g1	2635	2659	2646	-35.40	-24.70	0.69774011299435	13.5	2-8,2658-2652;9-18,2647-2638	1-1,2659-2659[UP5];x-x,2651-2648[BULt];19-21,2637-2635[UP3]	...((((((((((....(((((((.&.)))))))----))))))))))...	AGCCGCCUGCGAAUUUCAAGGUCGA&GCGAUCUU----UUCGUAGGCGUUU	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN6604_c0_g1_2646_TPlot.pdf
TRINITY_DN6604_c0_g1:2653	si_s625	TRINITY_DN6604_c0_g1	2638	2665	2653	-37.00	-25.50	0.689189189189189	15.5	1-4,2665-2662;5-11,2658-2652;12-21,2647-2638	x-x,2661-2659[BULt];x-x,2651-2648[BULt]	((((((((((....(((((((...((((&))))---)))))))----))))))))))	CGCCUGCGAAUUUCAAGGUCGAAACUUG&CAAG---CGAUCUU----UUCGUAGGCG	2	0.657117960668684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s625_TRINITY_DN6604_c0_g1_2653_TPlot.pdf
TRINITY_DN6604_c0_g1:2674	si_s379	TRINITY_DN6604_c0_g1	2663	2682	2674	-42.50	-28.40	0.668235294117647	6.5	1-4,2682-2679;6-7,2678-2677;9-17,2675-2667;19-20,2665-2664	5-5,x-x[BULq];8-8,2676-2676[SIL];18-18,2666-2666[SIL];21-21,2663-2663[UP3]	.((.(((((((((.((-((((&)))).)).))))))))).)).	UUGCGAGGCGGACUCG-GAGC&GCUCGCGUGUCCGCCUUACAU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN6604_c0_g1_2674_TPlot.pdf
TRINITY_DN6604_c0_g1:2675	si_s378	TRINITY_DN6604_c0_g1	2664	2683	2675	-43.80	-28.70	0.655251141552511	6.5	2-5,2682-2679;7-8,2678-2677;10-18,2675-2667;20-21,2665-2664	1-1,2683-2683[UP5];6-6,x-x[BULq];9-9,2676-2676[SIL];19-19,2666-2666[SIL]	((.(((((((((.((-((((.&.)))).)).))))))))).))	UGCGAGGCGGACUCG-GAGCU&CGCUCGCGUGUCCGCCUUACA	2	0.987487715898913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN6604_c0_g1_2675_TPlot.pdf
TRINITY_DN6604_c0_g1:2677	si_s376	TRINITY_DN6604_c0_g1	2666	2685	2677	-42.50	-27.90	0.656470588235294	10.5	4-7,2682-2679;9-10,2678-2677;12-20,2675-2667	1-3,2685-2683[UP5];8-8,x-x[BULq];11-11,2676-2676[SIL];21-21,2666-2666[UP3]	.(((((((((.((-((((...&...)))).)).))))))))).	CGAGGCGGACUCG-GAGCUCU&AUCGCUCGCGUGUCCGCCUUA	2	0.999407020573315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN6604_c0_g1_2677_TPlot.pdf
TRINITY_DN6604_c0_g1:2679	si_s373	TRINITY_DN6604_c0_g1	2669	2688	2679	-47.30	-31.10	0.657505285412262	7	1-4,2688-2685;7-10,2682-2679;12-13,2678-2677;15-21,2675-2669	5-6,2684-2683[SIL];11-11,x-x[BULq];14-14,2676-2676[SIL]	(((((((.((-((((..((((&))))..)))).)).)))))))	GGCGGACUCG-GAGCUCUCGG&CCGAUCGCUCGCGUGUCCGCC	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN6604_c0_g1_2679_TPlot.pdf
TRINITY_DN6605_c0_g1:1428	si_a478	TRINITY_DN6605_c0_g1	1417	1437	1428	-21.30	-14.10	0.661971830985915	9	4-6,1434-1432;8-21,1430-1417	1-3,1437-1435[UP5];7-7,1431-1431[SIL]	((((((((((((((.(((...&...))).))))))))))))))	AUAUUCUAUAUAAUCAUGGAA&AAUUAUUGUUAUAUAGAAUAU	4	0.999990054957166	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN6605_c0_g1_1428_TPlot.pdf
TRINITY_DN66066_c0_g1:476	si_s777	TRINITY_DN66066_c0_g1	464	485	476	-26.60	-17.80	0.669172932330827	8.5	2-15,484-471;17-18,468-467	1-1,485-485[UP5];16-16,470-469[AILt];19-21,466-464[UP3]	...((..((((((((((((((.&.))))))))))))))-.))...	CAAGUGCUUGUGGCAAUGGUAU&UUACUAUUGCUAUAA-AACAAG	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN66066_c0_g1_476_TPlot.pdf
TRINITY_DN66066_c0_g1:480	si_s773	TRINITY_DN66066_c0_g1	469	489	480	-23.10	-17.20	0.744588744588744	13	6-19,484-471	1-5,489-485[UP5];20-21,470-469[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCUUGUGGCAAUGGUAUAUUU&UUAAUUACUAUUGCUAUAAAA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN66066_c0_g1_480_TPlot.pdf
TRINITY_DN66075_c0_g1:128	si_a8	TRINITY_DN66075_c0_g1	117	137	128	-29.50	-20.30	0.688135593220339	8.5	2-3,136-135;5-18,133-120	1-1,137-137[UP5];4-4,134-134[SIL];19-21,119-117[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	CUUAUGGGCUUUUUCUUGGAA&AUUGAAGAGAAAGCCUAUUUA	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a8_TRINITY_DN66075_c0_g1_128_TPlot.pdf
TRINITY_DN66075_c0_g1:131	si_a5	TRINITY_DN66075_c0_g1	120	140	131	-31.10	-20.30	0.652733118971061	11.5	5-6,136-135;8-21,133-120	1-4,140-137[UP5];7-7,134-134[SIL]	((((((((((((((.((....&....)).))))))))))))))	AUGGGCUUUUUCUUGGAAAUA&GAAAUUGAAGAGAAAGCCUAU	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a5_TRINITY_DN66075_c0_g1_131_TPlot.pdf
TRINITY_DN66076_c0_g1:1085	si_a857	TRINITY_DN66076_c0_g1	1074	1093	1085	-25.50	-17.50	0.686274509803922	8	1-6,1093-1088;8-17,1087-1078	7-7,x-x[BULq];18-21,1077-1074[UP3]	....((((((((((-((((((&)))))).))))))))))....	UUGGGAUGAUUGGA-UUCGAG&CUUGAAAUCCAAUUAUUAAAG	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a857_TRINITY_DN66076_c0_g1_1085_TPlot.pdf
TRINITY_DN6607_c0_g1:1427	si_a383	TRINITY_DN6607_c0_g1	1416	1436	1427	-24.80	-16.80	0.67741935483871	7	2-12,1435-1425;15-18,1422-1419	1-1,1436-1436[UP5];13-14,1424-1423[SIL];19-21,1418-1416[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	GUAAUUCGGAAUUCGGAAUCU&UGAUUUCGAAUUAAGAAUAUA	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a383_TRINITY_DN6607_c0_g1_1427_TPlot.pdf
TRINITY_DN6607_c1_g1:636	si_a15	TRINITY_DN6607_c1_g1	625	645	636	-26.20	-17.70	0.675572519083969	8.5	2-17,644-629	1-1,645-645[UP5];18-21,628-625[UP3]	....((((((((((((((((.&.))))))))))))))))....	UCAUAAGUAAGUGGGUUUUCC&AGAAAGCCUAUUUAUUUUUAG	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN6607_c1_g1_636_TPlot.pdf
TRINITY_DN6607_c2_g1:1463	si_a769	TRINITY_DN6607_c2_g1	1452	1472	1463	-26.70	-19.10	0.715355805243446	6.5	1-5,1472-1468;7-21,1466-1452	6-6,1467-1467[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	AGGAGUUGAGUUAGUAAAAGA&UUUUUGAUUGAUUCAACUCUU	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN6607_c2_g1_1463_TPlot.pdf
TRINITY_DN66081_c0_g1:800	si_s601	TRINITY_DN66081_c0_g1	789	809	800	-28.30	-18.70	0.660777385159011	8.5	1-5,809-805;7-16,803-794	6-6,804-804[SIL];17-21,793-789[UP3]	.....((((((((((.(((((&))))).)))))))))).....	CAAAUGAAGAUUUGCAUGGAU&AUCCAAGCGAAUCUUUUUUAA	4	0.99664495834286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN66081_c0_g1_800_TPlot.pdf
TRINITY_DN66083_c0_g1:17	si_a497	TRINITY_DN66083_c0_g1	6	28	17	-32.00	-20.90	0.653125	13.5	3-5,26-24;7-8,22-21;9-19,18-8	1-2,28-27[UP5];6-6,23-23[SIL];x-x,20-19[BULt];20-21,7-6[UP3]	..(((((((((((..((.(((..&..))).))--)))))))))))..	CUGGAGGACGAAACAGGGGACGA&AUGUCGUU--UUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN66083_c0_g1_17_TPlot.pdf
TRINITY_DN66083_c0_g1:44	si_a194	TRINITY_DN66083_c0_g1	34	53	44	-29.40	-19.50	0.663265306122449	5	1-11,53-43;14-19,41-36	12-13,42-42[AILq];20-21,35-34[UP3]	..((((((.-(((((((((((&)))))))))))..))))))..	AGUUAUUAA-GAACAGGGAAA&UUUCCCUGUUCACUAAUAAAU	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN66083_c0_g1_44_TPlot.pdf
TRINITY_DN66089_c0_g1:124	si_a24	TRINITY_DN66089_c0_g1	113	133	124	-24.20	-16.40	0.677685950413223	19	10-21,124-113	1-9,133-125[UP5]	((((((((((((.........&.........))))))))))))	GUCUUGGAGCUGCAAUCAUCU&AUUUAUUUUUAGUUCUAAGAC	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN66089_c0_g1_124_TPlot.pdf
TRINITY_DN6609_c0_g1:1089	si_a97	TRINITY_DN6609_c0_g1	1078	1098	1089	-26.00	-19.00	0.730769230769231	11	4-17,1095-1082	1-3,1098-1096[UP5];18-21,1081-1078[UP3]	....((((((((((((((...&...))))))))))))))....	UUGCUGUUUUCGUUGCCUGUA&AAAAGGUAACGAAGAUAAAAU	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN6609_c0_g1_1089_TPlot.pdf
TRINITY_DN6609_c0_g1:1091	si_a95	TRINITY_DN6609_c0_g1	1080	1100	1091	-28.60	-19.00	0.664335664335664	13	6-19,1095-1082	1-5,1100-1096[UP5];20-21,1081-1080[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCUGUUUUCGUUGCCUGUACA&AGAAAAGGUAACGAAGAUAAA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a95_TRINITY_DN6609_c0_g1_1091_TPlot.pdf
TRINITY_DN6609_c0_g1:1117	si_a410	TRINITY_DN6609_c0_g1	1106	1126	1117	-17.80	-11.70	0.657303370786517	9	1-9,1126-1118;11-18,1116-1109	10-10,1117-1117[SIL];19-21,1108-1106[UP3]	...((((((((.(((((((((&))))))))).))))))))...	AGAAUUUAAAUUUGGACGAGA&UUUUGUUUAUAUUUAAAUAAA	2	0.999999999896146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6609_c0_g1_1117_TPlot.pdf
TRINITY_DN6609_c0_g1:1244	si_s65	TRINITY_DN6609_c0_g1	1233	1259	1244	-26.00	-17.60	0.676923076923077	18	3-8,1257-1252;9-21,1245-1233	1-2,1259-1258[UP5];x-x,1251-1246[BULt]	(((((((((((((......((((((..&..))))))------)))))))))))))	GGAGAAGGAUGGAAUGAAAAGUUGCCA&UAGCAACU------UCUAUUUUUUUUC	3	0.999990058145084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN6609_c0_g1_1244_TPlot.pdf
TRINITY_DN6609_c0_g1:931	si_a20	TRINITY_DN6609_c0_g1	920	940	931	-26.70	-18.60	0.696629213483146	11	1-5,940-936;7-8,934-933;10-19,931-922	6-6,935-935[SIL];9-9,932-932[SIL];20-21,921-920[UP3]	..((((((((((.((.(((((&))))).)).))))))))))..	UCGAGCUGAGAAAGGUUGGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN6609_c0_g1_931_TPlot.pdf
TRINITY_DN66107_c0_g1:1463	si_a113	TRINITY_DN66107_c0_g1	1452	1472	1463	-26.20	-17.40	0.66412213740458	13	6-18,1467-1455	1-5,1472-1468[UP5];19-21,1454-1452[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAGAAAUAAGCUCGUUAAAG&AAAAUACGAGCUUGUUUUAUA	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN66107_c0_g1_1463_TPlot.pdf
TRINITY_DN66107_c0_g1:1493	si_a451	TRINITY_DN66107_c0_g1	1482	1502	1493	-23.60	-16.20	0.686440677966102	9.5	3-17,1500-1486	1-2,1502-1501[UP5];18-21,1485-1482[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGCUGUAACAGCAAUUGUAU&AGAUAAUUGUUGUUAUAUAUA	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN66107_c0_g1_1493_TPlot.pdf
TRINITY_DN66107_c0_g1:1496	si_a448	TRINITY_DN66107_c0_g1	1485	1506	1496	-25.50	-17.10	0.670588235294118	7	1-5,1506-1502;6-20,1500-1486	x-x,1501-1501[BULt];21-21,1485-1485[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	CUGUAACAGCAAUUGUAUUUAU&AUGAG-AUAAUUGUUGUUAUAU	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN66107_c0_g1_1496_TPlot.pdf
TRINITY_DN66107_c0_g1:1497	si_a447	TRINITY_DN66107_c0_g1	1486	1507	1497	-25.70	-17.00	0.66147859922179	7	2-6,1506-1502;7-21,1500-1486	1-1,1507-1507[UP5];x-x,1501-1501[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	UGUAACAGCAAUUGUAUUUAUU&UAUGAG-AUAAUUGUUGUUAUA	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN66107_c0_g1_1497_TPlot.pdf
TRINITY_DN66118_c0_g1:139	si_a869	TRINITY_DN66118_c0_g1	127	148	139	-24.80	-16.32	0.658064516129032	8.5	1-11,148-138;15-19,133-129	12-14,137-134[AILt];20-21,128-127[UP3]	..(((((....(((((((((((&)))))))))))-...)))))..	UGGCAGCGGUCAUCUUUAAUAA&UUAUUAAAGAU-UUAGUUGCAA	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN66118_c0_g1_139_TPlot.pdf
TRINITY_DN66118_c0_g1:141	si_a867	TRINITY_DN66118_c0_g1	129	150	141	-24.10	-15.92	0.660580912863071	7.5	3-13,148-138;17-21,133-129	1-2,150-149[UP5];14-16,137-134[AILt]	(((((....(((((((((((..&..)))))))))))-...)))))	GCAGCGGUCAUCUUUAAUAAAA&AAUUAUUAAAGAU-UUAGUUGC	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN66118_c0_g1_141_TPlot.pdf
TRINITY_DN66118_c0_g1:164	si_a492	TRINITY_DN66118_c0_g1	151	173	164	-30.20	-20.80	0.688741721854305	6.5	1-3,173-171;6-17,168-157;18-21,154-151	4-5,170-169[SIL];x-x,156-155[BULt]	((((..((((((((((((..(((&)))..))))))))))))--))))	AGGCGGGAAAAACGACAUUCUCU&AGAAUAUGUCGUUUUUC--GUCU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN66118_c0_g1_164_TPlot.pdf
TRINITY_DN66118_c0_g1:165	si_a491	TRINITY_DN66118_c0_g1	152	174	165	-29.90	-20.30	0.678929765886288	7	1-4,174-171;7-18,168-157;19-21,154-152	5-6,170-169[SIL];x-x,156-155[BULt]	(((..((((((((((((..((((&))))..))))))))))))--)))	GGCGGGAAAAACGACAUUCUCUG&UAGAAUAUGUCGUUUUUC--GUC	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN66118_c0_g1_165_TPlot.pdf
TRINITY_DN66118_c0_g1:167	si_a489	TRINITY_DN66118_c0_g1	156	176	167	-27.70	-21.00	0.75812274368231	7	2-6,175-171;9-20,168-157	1-1,176-176[UP5];7-8,170-169[SIL];21-21,156-156[UP3]	.((((((((((((..(((((.&.)))))..)))))))))))).	GGAAAAACGACAUUCUCUGUC&UAUAGAAUAUGUCGUUUUUCG	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN66118_c0_g1_167_TPlot.pdf
TRINITY_DN66118_c0_g1:168	si_a488	TRINITY_DN66118_c0_g1	157	177	168	-26.40	-20.40	0.772727272727273	8	3-7,175-171;10-21,168-157	1-2,177-176[UP5];8-9,170-169[SIL]	((((((((((((..(((((..&..)))))..))))))))))))	GAAAAACGACAUUCUCUGUCA&AUAUAGAAUAUGUCGUUUUUC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN66118_c0_g1_168_TPlot.pdf
TRINITY_DN66118_c0_g1:169	si_a487	TRINITY_DN66118_c0_g1	158	178	169	-24.80	-17.20	0.693548387096774	10	4-8,175-171;11-21,168-158	1-3,178-176[UP5];9-10,170-169[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	AAAAACGACAUUCUCUGUCAG&UAUAUAGAAUAUGUCGUUUUU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN66118_c0_g1_169_TPlot.pdf
TRINITY_DN66118_c0_g1:170	si_a486	TRINITY_DN66118_c0_g1	159	179	170	-24.90	-16.30	0.654618473895582	12	5-9,175-171;12-21,168-159	1-4,179-176[UP5];10-11,170-169[SIL]	((((((((((..(((((....&....)))))..))))))))))	AAAACGACAUUCUCUGUCAGU&UUAUAUAGAAUAUGUCGUUUU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN66118_c0_g1_170_TPlot.pdf
TRINITY_DN66118_c0_g1:742	si_a23	TRINITY_DN66118_c0_g1	731	751	742	-22.80	-15.30	0.671052631578947	8.5	3-7,749-745;9-21,743-731	1-2,751-750[UP5];8-8,744-744[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	UUUUGGAGCUGAGUAUAAAGG&UAUUUAUUUUUAGUUCUAAGA	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN66118_c0_g1_742_TPlot.pdf
TRINITY_DN6611_c0_g1:816	si_s88	TRINITY_DN6611_c0_g1	805	826	816	-34.80	-23.30	0.669540229885058	8	1-6,826-821;7-17,819-809	x-x,820-820[BULt];18-21,808-805[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	CGUCCGAAGAAGAGGUAGAGGA&UCCUUU-CUUCUUCUUCGCUUC	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6611_c0_g1_816_TPlot.pdf
TRINITY_DN66124_c0_g1:565	si_a470	TRINITY_DN66124_c0_g1	553	574	565	-21.30	-14.40	0.676056338028169	6.5	1-10,574-565;11-19,563-555	x-x,564-564[BULt];20-21,554-553[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	GUUAAUAAUGGUUUACAUAUUA&UAAUAUGUAA-UUAUUGUUAUA	2	0.99751887635167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN66124_c0_g1_565_TPlot.pdf
TRINITY_DN66124_c0_g1:566	si_a469	TRINITY_DN66124_c0_g1	554	575	566	-21.10	-14.40	0.682464454976303	6	2-11,574-565;12-20,563-555	1-1,575-575[UP5];x-x,564-564[BULt];21-21,554-554[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	UUAAUAAUGGUUUACAUAUUAA&AUAAUAUGUAA-UUAUUGUUAU	2	0.994764405127733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN66124_c0_g1_566_TPlot.pdf
TRINITY_DN66127_c0_g1:213	si_a488	TRINITY_DN66127_c0_g1	198	222	213	-26.40	-18.38	0.696212121212121	14	2-10,221-213;12-21,207-198	1-1,222-222[UP5];11-11,212-208[AILt]	((((((((((.....(((((((((.&.)))))))))----.))))))))))	GAAAAACGACCCGACUGUUCUGUGC&AUAUAGAAUA----UGUCGUUUUUC	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN66127_c0_g1_213_TPlot.pdf
TRINITY_DN66134_c0_g1:1437	si_s94	TRINITY_DN66134_c0_g1	1425	1446	1437	-35.50	-25.20	0.709859154929577	7	1-4,1446-1443;6-13,1441-1434;14-18,1432-1428	5-5,1442-1442[SIL];x-x,1433-1433[BULt];19-21,1427-1425[UP3]	...(((((.((((((((.((((&)))).))))))))-)))))...	UUUUCCGAUAGCGAAGAUGAGG&CUUCUUCUUCGCU-UCGGAUUG	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN66134_c0_g1_1437_TPlot.pdf
TRINITY_DN66134_c0_g1:1441	si_s90	TRINITY_DN66134_c0_g1	1429	1452	1441	-35.30	-24.00	0.679886685552408	9	1-4,1452-1449;5-8,1446-1443;10-17,1441-1434;18-21,1432-1429	x-x,1448-1447[BULt];9-9,1442-1442[SIL];x-x,1433-1433[BULt]	((((.((((((((.((((..((((&))))--)))).))))))))-))))	CCGAUAGCGAAGAUGAGGGCGAAG&CUUU--CUUCUUCUUCGCU-UCGG	4	0.999999999922797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN66134_c0_g1_1441_TPlot.pdf
TRINITY_DN66134_c0_g1:214	si_a454	TRINITY_DN66134_c0_g1	204	223	214	-21.30	-15.30	0.71830985915493	7	3-14,221-210;16-21,209-204	1-2,223-222[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UAUUAU-UAUGACAGCGAUAU&UAAUUGUUGUUAUAUAUAAUA	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN66134_c0_g1_214_TPlot.pdf
TRINITY_DN6613_c1_g1:2378	si_s7	TRINITY_DN6613_c1_g1	2367	2386	2378	-21.70	-14.20	0.654377880184332	8.5	1-7,2386-2380;9-17,2379-2371	8-8,x-x[BULq];18-21,2370-2367[UP3]	....(((((((((-(((((((&))))))).)))))))))....	UUCAAGUGAUAGU-AGUGAUA&UAUUACUUAUUAUUACUAUAU	3	0.99999899076026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN6613_c1_g1_2378_TPlot.pdf
TRINITY_DN6613_c1_g1:3710	si_s254	TRINITY_DN6613_c1_g1	3699	3719	3710	-29.40	-19.50	0.663265306122449	6	1-14,3719-3706;16-17,3704-3703	15-15,3705-3705[SIL];18-21,3702-3699[UP3]	....((.((((((((((((((&)))))))))))))).))....	CGAUGGCAGUAUAUCGGGAAA&UUUCCCGAUAUAUUACUCAAA	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN6613_c1_g1_3710_TPlot.pdf
TRINITY_DN6613_c1_g1:3711	si_s253	TRINITY_DN6613_c1_g1	3700	3720	3711	-29.50	-19.50	0.661016949152542	6	2-15,3719-3706;17-18,3704-3703	1-1,3720-3720[UP5];16-16,3705-3705[SIL];19-21,3702-3700[UP3]	...((.((((((((((((((.&.)))))))))))))).))...	GAUGGCAGUAUAUCGGGAAAG&AUUUCCCGAUAUAUUACUCAA	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN6613_c1_g1_3711_TPlot.pdf
TRINITY_DN6613_c1_g1:3790	si_s69	TRINITY_DN6613_c1_g1	3779	3800	3790	-23.40	-15.50	0.662393162393162	9.5	3-6,3798-3795;9-21,3791-3779	1-2,3800-3799[UP5];7-8,3794-3792[AILt]	(((((((((((((...((((..&..))))-..)))))))))))))	GAAAGAAGAAAAAAGUGAAGAA&AACUUC-UAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6613_c1_g1_3790_TPlot.pdf
TRINITY_DN6616_c2_g1:191	si_a74	TRINITY_DN6616_c2_g1	180	200	191	-22.20	-14.58	0.656756756756757	7.5	1-4,200-197;8-20,193-181	5-7,196-194[SIL];21-21,180-180[UP3]	.(((((((((((((...((((&))))...))))))))))))).	CAAUGAUGAAAAACCACUUGA&UCAAAUUGUUUUUCAUUAUUA	3	0.999999999982668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN6616_c2_g1_191_TPlot.pdf
TRINITY_DN66170_c0_g1:459	si_a466	TRINITY_DN66170_c0_g1	448	468	459	-21.50	-15.30	0.711627906976744	3.5	1-3,468-466;5-20,464-449	4-4,465-465[SIL];21-21,448-448[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	UUAAUAAUUACAUAUUAAAUA&UAUAUAAUAUGUAAUUAUUGU	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN66170_c0_g1_459_TPlot.pdf
TRINITY_DN66170_c0_g1:461	si_a464	TRINITY_DN66170_c0_g1	450	470	461	-19.60	-14.20	0.724489795918367	5	3-5,468-466;7-21,464-450	1-2,470-469[UP5];6-6,465-465[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	AAUAAUUACAUAUUAAAUAAG&UAUAUAUAAUAUGUAAUUAUU	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN66170_c0_g1_461_TPlot.pdf
TRINITY_DN66183_c0_g1:341	si_a303	TRINITY_DN66183_c0_g1	329	350	341	-28.40	-19.00	0.669014084507042	8.5	4-16,347-335;17-21,333-329	1-3,350-348[UP5];x-x,334-334[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	AUGGACUCUAAGUGAAUCUGAA&AAAAGAUUCGCUUGGA-UUUAU	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN66183_c0_g1_341_TPlot.pdf
TRINITY_DN66183_c0_g1:343	si_a301	TRINITY_DN66183_c0_g1	332	352	343	-27.80	-18.10	0.651079136690648	13.5	6-18,347-335	1-5,352-348[UP5];19-21,334-332[UP3]	...(((((((((((((.....&.....)))))))))))))...	GACUCUAAGUGAAUCUGAAAG&AAAAAAGAUUCGCUUGGAUUU	3	0.999999661750396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN66183_c0_g1_343_TPlot.pdf
TRINITY_DN66183_c0_g1:494	si_s426	TRINITY_DN66183_c0_g1	483	503	494	-23.60	-15.40	0.652542372881356	5.5	1-4,503-500;6-18,498-486	5-5,499-499[SIL];19-21,485-483[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AAUUAGUUAUUGUUAUCUAGA&UCUAUAUAACAAUAAUUACAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN66183_c0_g1_494_TPlot.pdf
TRINITY_DN66183_c0_g1:496	si_s424	TRINITY_DN66183_c0_g1	485	505	496	-22.90	-16.30	0.711790393013101	4.5	2-6,504-500;8-20,498-486	1-1,505-505[UP5];7-7,499-499[SIL];21-21,485-485[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UUAGUUAUUGUUAUCUAGAAA&AUUCUAUAUAACAAUAAUUAC	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s424_TRINITY_DN66183_c0_g1_496_TPlot.pdf
TRINITY_DN66183_c0_g1:497	si_s423	TRINITY_DN66183_c0_g1	486	506	497	-21.50	-16.30	0.758139534883721	5.5	3-7,504-500;9-21,498-486	1-2,506-505[UP5];8-8,499-499[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	UAGUUAUUGUUAUCUAGAAAU&UAUUCUAUAUAACAAUAAUUA	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN66183_c0_g1_497_TPlot.pdf
TRINITY_DN66185_c0_g1:57	si_a460	TRINITY_DN66185_c0_g1	46	66	57	-21.60	-16.80	0.777777777777778	7	1-13,66-54;15-19,52-48	14-14,53-53[SIL];20-21,47-46[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	AAUACAUUUUGUAUGUGGCAA&UUGUUAUAUAUAAUAUGUAAU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN66185_c0_g1_57_TPlot.pdf
TRINITY_DN6618_c0_g1:2798	si_s65	TRINITY_DN6618_c0_g1	2787	2807	2798	-26.00	-17.40	0.669230769230769	7.5	1-4,2807-2804;7-11,2801-2797;13-21,2795-2787	5-6,2803-2802[SIL];12-12,2796-2796[SIL]	(((((((((.(((((..((((&))))..))))).)))))))))	GAGGAAAAAAAGAAGGCGCUG&UAGCAACUUCUAUUUUUUUUC	4	0.999999034889186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN6618_c0_g1_2798_TPlot.pdf
TRINITY_DN661_c0_g1:480	si_s194	TRINITY_DN661_c0_g1	466	489	480	-30.30	-19.80	0.653465346534653	11.5	2-10,488-480;11-20,476-467	1-1,489-489[UP5];x-x,479-477[BULt];21-21,466-466[UP3]	.((((((((((...(((((((((.&.)))))))))---)))))))))).	GGGUGCAUUCUCAGGAAAUAAUUA&CGAUUAUUUU---GGAAUGUACCA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN661_c0_g1_480_TPlot.pdf
TRINITY_DN66207_c0_g1:202	si_s436	TRINITY_DN66207_c0_g1	190	211	202	-19.60	-13.20	0.673469387755102	8	5-16,207-196;17-21,194-190	1-4,211-208[UP5];x-x,195-195[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	UAUAUAAUAAUAUGUAAUAAUA&AAUAAUUACAUAUUAU-AUAUA	4	0.999980346173202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN66207_c0_g1_202_TPlot.pdf
TRINITY_DN66216_c0_g1:54	si_s627	TRINITY_DN66216_c0_g1	43	63	54	-36.10	-26.50	0.734072022160665	8	4-14,60-50;16-21,48-43	1-3,63-61[UP5];15-15,49-49[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GACGCCGGCGGAAAGAUCAAG&AGCGAUCUUUUCGUAGGCGUU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN66216_c0_g1_54_TPlot.pdf
TRINITY_DN66216_c0_g1:82	si_s83	TRINITY_DN66216_c0_g1	63	91	82	-30.90	-20.90	0.676375404530744	14	3-16,89-76;17-21,67-63	1-2,91-90[UP5];x-x,75-68[BULt]	(((((........((((((((((((((..&..))))))))))))))--------)))))	GAAGGGUGCUGCAGGAAGAAAGGGAGGUG&UUCUUUCCUUUCUUCU--------UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN66216_c0_g1_82_TPlot.pdf
TRINITY_DN66216_c0_g1:86	si_s79	TRINITY_DN66216_c0_g1	75	95	86	-26.20	-19.90	0.759541984732824	13.5	7-21,89-75	1-6,95-90[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAAGAAAGGGAGGUGGUCC&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999812447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN66216_c0_g1_86_TPlot.pdf
TRINITY_DN66219_c0_g1:454	si_s817	TRINITY_DN66219_c0_g1	443	463	454	-24.50	-17.80	0.726530612244898	8	1-4,463-460;7-18,457-446	5-6,459-458[SIL];19-21,445-443[UP3]	...((((((((((((..((((&))))..))))))))))))...	CUCUCGUUGUUAAGACCAGGU&ACCUUUUCUUAAUAAUGAAAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN66219_c0_g1_454_TPlot.pdf
TRINITY_DN66219_c0_g1:455	si_s816	TRINITY_DN66219_c0_g1	444	464	455	-24.90	-19.10	0.76706827309237	7	1-5,464-460;8-19,457-446	6-7,459-458[SIL];20-21,445-444[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	UCUCGUUGUUAAGACCAGGUA&UACCUUUUCUUAAUAAUGAAA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN66219_c0_g1_455_TPlot.pdf
TRINITY_DN66219_c0_g1:537	si_a629	TRINITY_DN66219_c0_g1	526	546	537	-26.30	-17.90	0.680608365019011	10.5	2-17,545-530	1-1,546-546[UP5];18-21,529-526[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUUGAAAUUGGCGUGAUGCU&CGUAUUAUGUCGAUUUUUUUG	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN66219_c0_g1_537_TPlot.pdf
TRINITY_DN66219_c0_g1:590	si_s444	TRINITY_DN66219_c0_g1	580	598	590	-22.80	-15.10	0.662280701754386	9	1-9,598-590;13-21,588-580	10-12,589-589[AILq]	(((((((((.--(((((((((&)))))))))...)))))))))	AUUGUUGUUU--UGUGAUGUG&CAUAUUAUAUAUAACAACAAU	3	0.952963106641803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN66219_c0_g1_590_TPlot.pdf
TRINITY_DN6621_c0_g1:3576	si_a139	TRINITY_DN6621_c0_g1	3565	3585	3576	-25.90	-17.42	0.672586872586873	15	1-3,3585-3583;10-21,3576-3565	4-9,3582-3577[SIL]	((((((((((((......(((&)))......))))))))))))	GGACAGCGACGAGUGUCGGCU&AGUAAUUAAUCGUUGUUGUUU	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN6621_c0_g1_3576_TPlot.pdf
TRINITY_DN6621_c0_g1:3577	si_a138	TRINITY_DN6621_c0_g1	3566	3586	3577	-26.30	-17.92	0.681368821292776	15	1-4,3586-3583;11-21,3576-3566	5-10,3582-3577[SIL]	(((((((((((......((((&))))......)))))))))))	GACAGCGACGAGUGUCGGCUG&UAGUAAUUAAUCGUUGUUGUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN6621_c0_g1_3577_TPlot.pdf
TRINITY_DN6621_c0_g1:3692	si_a35	TRINITY_DN6621_c0_g1	3681	3701	3692	-37.80	-27.30	0.722222222222222	7	1-6,3701-3696;8-10,3694-3692;12-19,3690-3683	7-7,3695-3695[SIL];11-11,3691-3691[SIL];20-21,3682-3681[UP3]	..((((((((.(((.((((((&)))))).))).))))))))..	GCGACCUACCAGUCAUAGAGC&GUUCUAAGACCGGUAGGUCUA	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN6621_c0_g1_3692_TPlot.pdf
TRINITY_DN6621_c0_g1:3694	si_a33	TRINITY_DN6621_c0_g1	3683	3703	3694	-37.80	-27.00	0.714285714285714	7	3-8,3701-3696;10-12,3694-3692;14-21,3690-3683	1-2,3703-3702[UP5];9-9,3695-3695[SIL];13-13,3691-3691[SIL]	((((((((.(((.((((((..&..)))))).))).))))))))	GACCUACCAGUCAUAGAGCGC&UAGUUCUAAGACCGGUAGGUC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a33_TRINITY_DN6621_c0_g1_3694_TPlot.pdf
TRINITY_DN6621_c0_g1:3695	si_a32	TRINITY_DN6621_c0_g1	3684	3704	3695	-35.90	-23.70	0.66016713091922	9	4-9,3701-3696;11-13,3694-3692;15-21,3690-3684	1-3,3704-3702[UP5];10-10,3695-3695[SIL];14-14,3691-3691[SIL]	(((((((.(((.((((((...&...)))))).))).)))))))	ACCUACCAGUCAUAGAGCGCG&UUAGUUCUAAGACCGGUAGGU	2	0.725937604745649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN6621_c0_g1_3695_TPlot.pdf
TRINITY_DN6621_c0_g1:3809	si_s11	TRINITY_DN6621_c0_g1	3797	3818	3809	-23.60	-15.50	0.656779661016949	8.5	1-13,3818-3806;18-20,3800-3798	14-17,3805-3801[AILt];21-21,3797-3797[UP3]	.(((.....(((((((((((((&)))))))))))))-....))).	CUCAUCGCGGGUGAUGAUAAGU&ACUUAUUAUUACU-AUAUUGAU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN6621_c0_g1_3809_TPlot.pdf
TRINITY_DN6621_c0_g1:3816	si_s4	TRINITY_DN6621_c0_g1	3805	3825	3816	-21.60	-14.10	0.652777777777778	15.5	8-20,3818-3806	1-7,3825-3819[UP5];21-21,3805-3805[UP3]	.(((((((((((((.......&.......))))))))))))).	GGGUGAUGAUAAGUCUAACAA&UUAUAUUACUUAUUAUUACUA	2	0.999537689506999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN6621_c0_g1_3816_TPlot.pdf
TRINITY_DN6621_c0_g2:1247	si_s91	TRINITY_DN6621_c0_g2	1235	1256	1247	-34.70	-25.00	0.720461095100865	8	2-8,1255-1249;10-14,1247-1243;15-20,1241-1236	1-1,1256-1256[UP5];9-9,1248-1248[SIL];x-x,1242-1242[BULt];21-21,1235-1235[UP3]	.((((((.(((((.(((((((.&.))))))).)))))-)))))).	ACCGAAGACGAGGCGGAGGAAG&UUUCUUCUUCUUCG-CUUCGGA	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6621_c0_g2_1247_TPlot.pdf
TRINITY_DN6621_c0_g2:1248	si_s95	TRINITY_DN6621_c0_g2	1236	1258	1248	-36.30	-24.00	0.661157024793388	8	1-9,1258-1250;10-15,1248-1243;18-21,1239-1236	x-x,1249-1249[BULt];16-17,1242-1240[AILt]	((((...((((((.(((((((((&)))))))))-))))))-..))))	CCGAAGACGAGGCGGAGGAAGAG&UUCUUCUUC-GCUUCG-GAUUGG	3	0.999991195257928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN6621_c0_g2_1248_TPlot.pdf
TRINITY_DN6621_c0_g2:1250	si_s94	TRINITY_DN6621_c0_g2	1238	1259	1250	-35.50	-25.10	0.707042253521127	7.5	1-10,1259-1250;11-16,1248-1243;19-20,1240-1239	x-x,1249-1249[BULt];17-18,1242-1241[SIL];21-21,1238-1238[UP3]	.((..((((((.((((((((((&))))))))))-))))))..)).	GAAGACGAGGCGGAGGAAGAGG&CUUCUUCUUC-GCUUCGGAUUG	3	0.99568474398697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN6621_c0_g2_1250_TPlot.pdf
TRINITY_DN6621_c0_g2:1251	si_s90	TRINITY_DN6621_c0_g2	1236	1260	1251	-35.30	-27.90	0.790368271954674	11	1-12,1260-1249;13-15,1245-1243;16-21,1241-1236	x-x,1248-1246[BULt];x-x,1242-1242[BULt]	((((((.(((...((((((((((((&))))))))))))---)))-))))))	CCGAAGACGAGGCGGAGGAAGAGGG&CUUUCUUCUUCU---UCG-CUUCGG	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6621_c0_g2_1251_TPlot.pdf
TRINITY_DN6621_c0_g2:1252	si_s89	TRINITY_DN6621_c0_g2	1243	1261	1252	-35.30	-27.40	0.776203966005666	5.5	1-12,1261-1250;15-21,1249-1243	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	CGAGGCG--GAGGAAGAGGGG&CCUUUCUUCUUCUUCGCUUCG	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6621_c0_g2_1252_TPlot.pdf
TRINITY_DN6621_c0_g2:1253	si_s88	TRINITY_DN6621_c0_g2	1244	1262	1253	-34.80	-25.00	0.718390804597701	6.5	2-13,1261-1250;16-21,1249-1244	1-1,1262-1262[UP5];14-15,x-x[BULq]	((((((--((((((((((((.&.))))))))))))..))))))	GAGGCG--GAGGAAGAGGGGC&UCCUUUCUUCUUCUUCGCUUC	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6621_c0_g2_1253_TPlot.pdf
TRINITY_DN6621_c0_g2:1254	si_a498	TRINITY_DN6621_c0_g2	1243	1263	1254	-33.50	-21.80	0.650746268656716	10	2-4,1262-1260;6-11,1258-1253;13-15,1251-1249;17-21,1247-1243	1-1,1263-1263[UP5];5-5,1259-1259[SIL];12-12,1252-1252[SIL];16-16,1248-1248[SIL]	(((((.(((.((((((.(((.&.))).)))))).))).)))))	CGAGGCGGAGGAAGAGGGGCC&UGUCGUUUUUCGUCUUCCUUG	2	0.999999999926705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6621_c0_g2_1254_TPlot.pdf
TRINITY_DN6621_c0_g2:1261	si_s80	TRINITY_DN6621_c0_g2	1250	1278	1261	-28.20	-20.70	0.734042553191489	21	1-9,1278-1270;10-21,1261-1250	x-x,1269-1262[BULt]	((((((((((((........(((((((((&)))))))))--------))))))))))))	GAGGAAGAGGGGCCGCAGACGAAGAAGGA&UUUUUCUUU--------CCUUUCUUCUUC	2	0.999999923927425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6621_c0_g2_1261_TPlot.pdf
TRINITY_DN6621_c0_g2:1270	si_s79	TRINITY_DN6621_c0_g2	1251	1279	1270	-26.20	-17.60	0.67175572519084	21.5	2-10,1278-1270;11-21,1261-1251	1-1,1279-1279[UP5];x-x,1269-1262[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	AGGAAGAGGGGCCGCAGACGAAGAAGGAC&UUUUUUCUUU--------CCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6621_c0_g2_1270_TPlot.pdf
TRINITY_DN6621_c0_g2:1272	si_a497	TRINITY_DN6621_c0_g2	1256	1281	1272	-32.00	-21.10	0.659375	12	3-5,1279-1277;7-16,1275-1266;17-21,1260-1256	1-2,1281-1280[UP5];6-6,1276-1276[SIL];x-x,1265-1261[BULt]	(((((.....((((((((((.(((..&..))).))))))))))-----)))))	GAGGGGCCGCAGACGAAGAAGGACCU&AUGUCGUUUUUCGUCU-----UCCUU	2	0.999999999979913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6621_c0_g2_1272_TPlot.pdf
TRINITY_DN6621_c0_g2:1562	si_s311	TRINITY_DN6621_c0_g2	1551	1571	1562	-30.60	-20.30	0.663398692810457	13	6-9,1566-1563;11-21,1561-1551	1-5,1571-1567[UP5];10-10,1562-1562[SIL]	(((((((((((.((((.....&.....)))).)))))))))))	AACAAGAAGGGGAGGAAGGAA&GAAAAUUCUGUCCUUCUUGUU	4	0.999973760521391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN6621_c0_g2_1562_TPlot.pdf
TRINITY_DN6621_c0_g2:302	si_s801	TRINITY_DN6621_c0_g2	290	311	302	-28.20	-19.40	0.687943262411348	7.5	4-16,308-296;18-21,293-290	1-3,311-309[UP5];17-17,295-294[AILt]	((((..(((((((((((((...&...)))))))))))))-.))))	GAGGAGAACGAAGAUAAAAGGA&GUAUUUUAUCUUCGUU-ACCUU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN6621_c0_g2_302_TPlot.pdf
TRINITY_DN66222_c0_g1:144	si_s8	TRINITY_DN66222_c0_g1	133	153	144	-21.30	-14.10	0.661971830985915	11.5	5-7,149-147;9-21,145-133	1-4,153-150[UP5];8-8,146-146[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GAUAUAGUAGUGAAAAGAAAA&AUUACUUAUUAUUACUAUAUU	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN66222_c0_g1_144_TPlot.pdf
TRINITY_DN66222_c0_g1:394	si_a404	TRINITY_DN66222_c0_g1	383	403	394	-21.70	-15.50	0.714285714285714	7	1-10,403-394;12-20,392-384	11-11,393-393[SIL];21-21,383-383[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	CAAAUAUGGAAAGGACGAUUC&GAAUUGUUUUGUUUAUAUUUA	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN66222_c0_g1_394_TPlot.pdf
TRINITY_DN66222_c0_g1:427	si_a146	TRINITY_DN66222_c0_g1	417	437	427	-29.70	-19.50	0.656565656565657	8	1-7,437-431;9-16,428-421;18-21,420-417	8-8,430-429[AILt];17-17,x-x[BULq]	((((-((((((((..(((((((&)))))))-.)))))))).))))	GACC-UAAAACGAAGGGCGAUU&AAUCGUU-GUUGUUUUAAGGUC	4	0.999999923809806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN66222_c0_g1_427_TPlot.pdf
TRINITY_DN66222_c0_g1:740	si_a627	TRINITY_DN66222_c0_g1	729	749	740	-29.50	-19.50	0.661016949152542	5.5	1-6,749-744;8-11,742-739;13-20,737-730	7-7,743-743[SIL];12-12,738-738[SIL];21-21,729-729[UP3]	.((((((((.((((.((((((&)))))).)))).)))))))).	CAAAAAUUGCCAUACUACGCC&GGCGUAUUAUGUCGAUUUUUU	0	0.280497621398358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN66222_c0_g1_740_TPlot.pdf
TRINITY_DN66224_c0_g1:574	si_s603	TRINITY_DN66224_c0_g1	563	583	574	-27.20	-18.60	0.683823529411765	7	1-6,583-578;9-19,575-565	7-8,577-576[SIL];20-21,564-563[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	UGUUAAAAAAGAUGAGUUUGG&CCAAGCGAAUCUUUUUUAAAU	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN66224_c0_g1_574_TPlot.pdf
TRINITY_DN6622_c0_g1:116	si_a472	TRINITY_DN6622_c0_g1	105	125	116	-21.50	-16.20	0.753488372093023	11	4-18,122-108	1-3,125-123[UP5];19-21,107-105[UP3]	...(((((((((((((((...&...)))))))))))))))...	GACGUAGCAGUAGUUACAGUU&AUAUGUAAUUAUUGUUAUAUA	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN6622_c0_g1_116_TPlot.pdf
TRINITY_DN6622_c0_g1:117	si_a471	TRINITY_DN6622_c0_g1	106	126	117	-21.10	-16.20	0.767772511848341	11.5	5-19,122-108	1-4,126-123[UP5];20-21,107-106[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACGUAGCAGUAGUUACAGUUA&AAUAUGUAAUUAUUGUUAUAU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6622_c0_g1_117_TPlot.pdf
TRINITY_DN6622_c0_g1:159	si_s485	TRINITY_DN6622_c0_g1	147	168	159	-18.10	-13.00	0.718232044198895	5	1-13,168-156;14-18,154-150	x-x,155-155[BULt];19-21,149-147[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	AAGAUAUUCUAAAUAAAUAUGG&CUAUAUUUAUUUA-AAUAUAAA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN6622_c0_g1_159_TPlot.pdf
TRINITY_DN6622_c0_g1:163	si_s481	TRINITY_DN6622_c0_g1	151	171	163	-23.00	-16.10	0.7	3	1-5,171-167;7-17,166-156;18-21,154-151	6-6,x-x[BULq];x-x,155-155[BULt]	((((.(((((((((((-(((((&))))).)))))))))))-))))	UAUUCUAAAUAAAUAU-GGAUC&GAUCCUAUAUUUAUUUA-AAUA	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN6622_c0_g1_163_TPlot.pdf
TRINITY_DN66237_c0_g1:102	si_s344	TRINITY_DN66237_c0_g1	91	111	102	-33.40	-22.60	0.676646706586826	6.5	2-18,110-94	1-1,111-111[UP5];19-21,93-91[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CUAUUUUUAUCUUCUCGUGAU&UUCACGGGGAGAUAAAGAAAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN66237_c0_g1_102_TPlot.pdf
TRINITY_DN66237_c0_g1:15	si_s99	TRINITY_DN66237_c0_g1	4	26	15	-34.60	-23.40	0.676300578034682	8	1-6,26-21;7-9,19-17;10-20,15-5	x-x,20-20[BULt];x-x,16-16[BULt];21-21,4-4[UP3]	.(((((((((((.(((.((((((&))))))-)))-))))))))))).	AUUUCUAAUCCGUAGGUCGGAGG&UCUUCG-CUU-CGGAUUGGAAAA	0	0.118451141334844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN66237_c0_g1_15_TPlot.pdf
TRINITY_DN66237_c0_g1:17	si_s98	TRINITY_DN66237_c0_g1	5	27	17	-34.70	-23.20	0.668587896253602	8.5	2-7,26-21;8-10,19-17;11-21,15-5	1-1,27-27[UP5];x-x,20-20[BULt];x-x,16-16[BULt]	(((((((((((.(((.((((((.&.))))))-)))-)))))))))))	UUUCUAAUCCGUAGGUCGGAGGU&UUCUUCG-CUU-CGGAUUGGAAA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN66237_c0_g1_17_TPlot.pdf
TRINITY_DN66242_c0_g1:339	si_s793	TRINITY_DN66242_c0_g1	328	347	339	-30.50	-19.90	0.652459016393443	9.5	1-9,347-339;15-21,334-328	10-14,338-335[AILq]	(((((((....-(((((((((&))))))))).....)))))))	GAAGAUGUACC-UGAGCUUGU&ACAAGCUCGUAUUUUAUCUUC	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN66242_c0_g1_339_TPlot.pdf
TRINITY_DN6624_c1_g1:2113	si_s439	TRINITY_DN6624_c1_g1	2102	2123	2113	-21.50	-14.30	0.665116279069767	5.5	2-8,2122-2116;9-19,2114-2104	1-1,2123-2123[UP5];x-x,2115-2115[BULt];20-21,2103-2102[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	AUUUAUAUGUAAUAAUGUAAUG&AAUUACAU-AUUAUAUAUAACA	2	0.986684328710919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN6624_c1_g1_2113_TPlot.pdf
TRINITY_DN6624_c1_g1:2116	si_s437	TRINITY_DN6624_c1_g1	2104	2125	2116	-19.70	-14.30	0.725888324873097	7.5	4-10,2122-2116;11-21,2114-2104	1-3,2125-2123[UP5];x-x,2115-2115[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UUAUAUGUAAUAAUGUAAUGUA&AUAAUUACAU-AUUAUAUAUAA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN6624_c1_g1_2116_TPlot.pdf
TRINITY_DN66263_c0_g1:506	si_s440	TRINITY_DN66263_c0_g1	495	515	506	-21.60	-14.30	0.662037037037037	8.5	1-2,515-514;5-12,511-504;14-21,502-495	3-4,513-512[SIL];13-13,503-503[SIL]	((((((((.((((((((..((&))..)))))))).))))))))	UUGUUAUGGGUGGUAUGGUAU&AUUACAUAUUAUAUAUAACAA	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN66263_c0_g1_506_TPlot.pdf
TRINITY_DN66263_c0_g1:507	si_s439	TRINITY_DN66263_c0_g1	496	516	507	-21.50	-14.60	0.67906976744186	8	1-3,516-514;6-13,511-504;15-21,502-496	4-5,513-512[SIL];14-14,503-503[SIL]	(((((((.((((((((..(((&)))..)))))))).)))))))	UGUUAUGGGUGGUAUGGUAUU&AAUUACAUAUUAUAUAUAACA	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN66263_c0_g1_507_TPlot.pdf
TRINITY_DN66263_c0_g1:508	si_s438	TRINITY_DN66263_c0_g1	497	517	508	-21.20	-14.40	0.679245283018868	8	1-4,517-514;7-14,511-504;16-21,502-497	5-6,513-512[SIL];15-15,503-503[SIL]	((((((.((((((((..((((&))))..)))))))).))))))	GUUAUGGGUGGUAUGGUAUUA&UAAUUACAUAUUAUAUAUAAC	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN66263_c0_g1_508_TPlot.pdf
TRINITY_DN6626_c0_g1:2823	si_s803	TRINITY_DN6626_c0_g1	2811	2832	2823	-26.00	-19.90	0.765384615384615	8	4-14,2829-2819;15-20,2817-2812	1-3,2832-2830[UP5];x-x,2818-2818[BULt];21-21,2811-2811[UP3]	.((((((.(((((((((((...&...)))))))))))-)))))).	CGAGGGUAAACGAAGAUAAUCA&AUUUUAUCUUCGUU-ACCUUUU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6626_c0_g1_2823_TPlot.pdf
TRINITY_DN6626_c0_g1:2825	si_s801	TRINITY_DN6626_c0_g1	2813	2834	2825	-28.20	-18.70	0.663120567375887	10.5	6-16,2829-2819;17-21,2817-2813	1-5,2834-2830[UP5];x-x,2818-2818[BULt]	(((((.(((((((((((.....&.....)))))))))))-)))))	AGGGUAAACGAAGAUAAUCAAG&GUAUUUUAUCUUCGUU-ACCUU	4	0.999998951818157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN6626_c0_g1_2825_TPlot.pdf
TRINITY_DN6626_c0_g1:2826	si_s800	TRINITY_DN6626_c0_g1	2814	2840	2826	-29.70	-20.20	0.68013468013468	13.5	1-6,2840-2835;7-17,2829-2819;18-21,2817-2814	x-x,2834-2830[BULt];x-x,2818-2818[BULt]	((((.(((((((((((.....((((((&))))))-----)))))))))))-))))	GGGUAAACGAAGAUAAUCAAGGAUAUG&CGUAUU-----UUAUCUUCGUU-ACCU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6626_c0_g1_2826_TPlot.pdf
TRINITY_DN6626_c0_g1:2827	si_s799	TRINITY_DN6626_c0_g1	2815	2841	2827	-30.00	-20.70	0.69	13	1-7,2841-2835;8-18,2829-2819;19-21,2817-2815	x-x,2834-2830[BULt];x-x,2818-2818[BULt]	(((.(((((((((((.....(((((((&)))))))-----)))))))))))-)))	GGUAAACGAAGAUAAUCAAGGAUAUGA&UCGUAUU-----UUAUCUUCGUU-ACC	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN6626_c0_g1_2827_TPlot.pdf
TRINITY_DN6626_c0_g1:2829	si_s797	TRINITY_DN6626_c0_g1	2818	2843	2829	-30.00	-20.40	0.68	14	2-9,2842-2835;10-20,2829-2819	1-1,2843-2843[UP5];x-x,2834-2830[BULt];21-21,2818-2818[UP3]	.(((((((((((.....((((((((.&.))))))))-----))))))))))).	AAACGAAGAUAAUCAAGGAUAUGAGG&GCUCGUAUU-----UUAUCUUCGUUA	0	0.237506268175798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN6626_c0_g1_2829_TPlot.pdf
TRINITY_DN6627_c0_g2:393	si_a762	TRINITY_DN6627_c0_g2	382	403	393	-29.70	-19.80	0.666666666666667	6	1-6,403-398;7-13,396-390;15-20,388-383	x-x,397-397[BULt];14-14,389-389[SIL];21-21,382-382[UP3]	.((((((.(((((((.((((((&))))))-))))))).)))))).	CAAUCAAACAAAGACGCCGAAG&CUUUGG-GUUUUUGAUUGAUUC	4	0.999999946359056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN6627_c0_g2_393_TPlot.pdf
TRINITY_DN6628_c0_g1:893	si_a67	TRINITY_DN6628_c0_g1	883	902	893	-27.20	-18.10	0.665441176470588	6.5	2-11,901-892;13-20,891-884	1-1,902-902[UP5];12-12,x-x[BULq];21-21,883-883[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	CGAGAGCAA-UUGAAAGGAGA&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999984016	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN6628_c0_g1_893_TPlot.pdf
TRINITY_DN66308_c0_g1:1030	si_a659	TRINITY_DN66308_c0_g1	1019	1039	1030	-35.20	-23.00	0.653409090909091	8.5	1-2,1039-1038;4-17,1036-1023	3-3,1037-1037[SIL];18-21,1022-1019[UP3]	....((((((((((((((.((&)).))))))))))))))....	AUCGCAGUAGGUAUUUCUGGA&UCGGGAAAUGCCUAUUGAUUC	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a659_TRINITY_DN66308_c0_g1_1030_TPlot.pdf
TRINITY_DN66308_c0_g1:1031	si_a658	TRINITY_DN66308_c0_g1	1020	1040	1031	-33.40	-23.00	0.688622754491018	8.5	2-3,1039-1038;5-18,1036-1023	1-1,1040-1040[UP5];4-4,1037-1037[SIL];19-21,1022-1020[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	UCGCAGUAGGUAUUUCUGGAG&AUCGGGAAAUGCCUAUUGAUU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN66308_c0_g1_1031_TPlot.pdf
TRINITY_DN66308_c0_g1:1032	si_a657	TRINITY_DN66308_c0_g1	1021	1041	1032	-33.80	-23.00	0.680473372781065	9.5	3-4,1039-1038;6-19,1036-1023	1-2,1041-1040[UP5];5-5,1037-1037[SIL];20-21,1022-1021[UP3]	..((((((((((((((.((..&..)).))))))))))))))..	CGCAGUAGGUAUUUCUGGAGC&UAUCGGGAAAUGCCUAUUGAU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN66308_c0_g1_1032_TPlot.pdf
TRINITY_DN66308_c0_g1:1033	si_a656	TRINITY_DN66308_c0_g1	1022	1042	1033	-33.80	-23.00	0.680473372781065	10	4-5,1039-1038;7-20,1036-1023	1-3,1042-1040[UP5];6-6,1037-1037[SIL];21-21,1022-1022[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	GCAGUAGGUAUUUCUGGAGCC&AUAUCGGGAAAUGCCUAUUGA	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN66308_c0_g1_1033_TPlot.pdf
TRINITY_DN66308_c0_g1:1034	si_a655	TRINITY_DN66308_c0_g1	1023	1043	1034	-33.20	-22.80	0.686746987951807	11	5-6,1039-1038;8-21,1036-1023	1-4,1043-1040[UP5];7-7,1037-1037[SIL]	((((((((((((((.((....&....)).))))))))))))))	CAGUAGGUAUUUCUGGAGCCA&UAUAUCGGGAAAUGCCUAUUG	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a655_TRINITY_DN66308_c0_g1_1034_TPlot.pdf
TRINITY_DN66308_c0_g1:493	si_a73	TRINITY_DN66308_c0_g1	479	502	493	-21.90	-14.60	0.666666666666667	7	1-14,502-489;15-19,485-481	x-x,488-486[BULt];20-21,480-479[UP3]	..(((((...((((((((((((((&))))))))))))))---)))))..	AUUAAUGCUCAAAAACAGUUUGGA&UUCAAAUUGUUUUU---CAUUAUU	3	0.999999999991969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN66308_c0_g1_493_TPlot.pdf
TRINITY_DN66308_c0_g1:494	si_a72	TRINITY_DN66308_c0_g1	480	503	494	-21.90	-14.80	0.675799086757991	7	2-15,502-489;16-20,485-481	1-1,503-503[UP5];x-x,488-486[BULt];21-21,480-480[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	UUAAUGCUCAAAAACAGUUUGGAU&UUUCAAAUUGUUUUU---CAUUAU	3	0.999999999906984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN66308_c0_g1_494_TPlot.pdf
TRINITY_DN66308_c0_g1:859	si_a747	TRINITY_DN66308_c0_g1	849	868	859	-41.30	-27.10	0.656174334140436	8	3-10,866-859;12-16,858-854;18-21,852-849	1-2,868-867[UP5];11-11,x-x[BULq];17-17,853-853[SIL]	((((.(((((-((((((((..&..)))))))).))))).))))	UCAGUGGAGG-UCGUGGCCUA&CUGGCCAUGAACCUCCUUUGG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a747_TRINITY_DN66308_c0_g1_859_TPlot.pdf
TRINITY_DN66308_c0_g1:861	si_a745	TRINITY_DN66308_c0_g1	851	877	861	-42.00	-28.70	0.683333333333333	19	1-4,877-874;5-12,866-859;14-18,858-854	x-x,873-867[BULt];13-13,x-x[BULq];19-21,853-851[UP3]	...(((((-((((((((.......((((&))))-------)))))))).)))))...	AGUGGAGG-UCGUGGCCUAAAGUCAGGG&CCCU-------GGCCAUGAACCUCCUUU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN66308_c0_g1_861_TPlot.pdf
TRINITY_DN66308_c0_g1:862	si_a744	TRINITY_DN66308_c0_g1	852	878	862	-44.40	-31.70	0.713963963963964	18	1-5,878-874;6-13,866-859;15-19,858-854	x-x,873-867[BULt];14-14,x-x[BULq];20-21,853-852[UP3]	..(((((-((((((((.......(((((&)))))-------)))))))).)))))..	GUGGAGG-UCGUGGCCUAAAGUCAGGGG&CCCCU-------GGCCAUGAACCUCCUU	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a744_TRINITY_DN66308_c0_g1_862_TPlot.pdf
TRINITY_DN66308_c0_g1:863	si_a743	TRINITY_DN66308_c0_g1	853	879	863	-45.20	-31.70	0.701327433628319	18	2-6,878-874;7-14,866-859;16-20,858-854	1-1,879-879[UP5];x-x,873-867[BULt];15-15,x-x[BULq];21-21,853-853[UP3]	.(((((-((((((((.......(((((.&.)))))-------)))))))).))))).	UGGAGG-UCGUGGCCUAAAGUCAGGGGA&ACCCCU-------GGCCAUGAACCUCCU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a743_TRINITY_DN66308_c0_g1_863_TPlot.pdf
TRINITY_DN66308_c0_g1:864	si_a742	TRINITY_DN66308_c0_g1	854	880	864	-44.90	-31.30	0.697104677060134	18.5	3-7,878-874;8-15,866-859;17-21,858-854	1-2,880-879[UP5];x-x,873-867[BULt];16-16,x-x[BULq]	(((((-((((((((.......(((((..&..)))))-------)))))))).)))))	GGAGG-UCGUGGCCUAAAGUCAGGGGAC&UACCCCU-------GGCCAUGAACCUCC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a742_TRINITY_DN66308_c0_g1_864_TPlot.pdf
TRINITY_DN66308_c0_g1:865	si_a741	TRINITY_DN66308_c0_g1	855	881	865	-42.60	-28.20	0.661971830985915	20.5	4-8,878-874;9-16,866-859;18-21,858-855	1-3,881-879[UP5];x-x,873-867[BULt];17-17,x-x[BULq]	((((-((((((((.......(((((...&...)))))-------)))))))).))))	GAGG-UCGUGGCCUAAAGUCAGGGGACA&UUACCCCU-------GGCCAUGAACCUC	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a741_TRINITY_DN66308_c0_g1_865_TPlot.pdf
TRINITY_DN66308_c0_g1:965	si_s196	TRINITY_DN66308_c0_g1	953	973	965	-29.30	-19.60	0.668941979522184	5.5	1-7,973-967;9-16,966-959;17-21,957-953	8-8,x-x[BULq];x-x,958-958[BULt]	(((((.((((((((-(((((((&))))))).))))))))-)))))	GCUGGUUAUGUUCC-AAAUGAU&AUUAUUUUGGAAUGUA-CCAGU	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN66308_c0_g1_965_TPlot.pdf
TRINITY_DN66359_c0_g1:317	si_a365	TRINITY_DN66359_c0_g1	306	327	317	-28.60	-19.00	0.664335664335664	8	1-8,327-320;9-16,318-311	x-x,319-319[BULt];17-21,310-306[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	ACCCAUUUGAUCCUGAUCAGAA&UUUUGAUC-GGAUCAAAAAUGA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a365_TRINITY_DN66359_c0_g1_317_TPlot.pdf
TRINITY_DN66359_c0_g1:322	si_a361	TRINITY_DN66359_c0_g1	310	332	322	-29.00	-19.50	0.672413793103448	10	1-2,332-331;5-12,327-320;13-20,318-311	3-4,330-328[AILt];x-x,319-319[BULt];21-21,310-310[UP3]	.((((((((.((((((((...((&))-..))))))))-)))))))).	AUUUGAUCCUGAUCAGAAGCUGA&UC-UAUUUUGAUC-GGAUCAAAA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a361_TRINITY_DN66359_c0_g1_322_TPlot.pdf
TRINITY_DN66359_c0_g1:323	si_a360	TRINITY_DN66359_c0_g1	311	333	323	-29.10	-20.20	0.694158075601375	8	1-3,333-331;6-13,327-320;14-21,318-311	4-5,330-328[AILt];x-x,319-319[BULt]	((((((((.((((((((...(((&)))-..))))))))-))))))))	UUUGAUCCUGAUCAGAAGCUGAA&UUC-UAUUUUGAUC-GGAUCAAA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN66359_c0_g1_323_TPlot.pdf
TRINITY_DN66359_c0_g1:324	si_a359	TRINITY_DN66359_c0_g1	312	334	324	-29.20	-19.40	0.664383561643836	9	2-4,333-331;7-14,327-320;15-21,318-312	1-1,334-334[UP5];5-6,330-328[AILt];x-x,319-319[BULt]	(((((((.((((((((...(((.&.)))-..))))))))-)))))))	UUGAUCCUGAUCAGAAGCUGAAA&AUUC-UAUUUUGAUC-GGAUCAA	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN66359_c0_g1_324_TPlot.pdf
TRINITY_DN6635_c0_g1:1350	si_a544	TRINITY_DN6635_c0_g1	1339	1360	1350	-28.90	-19.00	0.657439446366782	10.5	1-4,1360-1357;6-17,1354-1343	5-5,1356-1355[AILt];18-21,1342-1339[UP3]	....((((((((((((..((((&))))-.))))))))))))....	AAUUGAGAUGGAUUGGCCCCGA&UCGG-UUCAAUCUAUUUCUUUA	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN6635_c0_g1_1350_TPlot.pdf
TRINITY_DN6635_c0_g1:1351	si_a543	TRINITY_DN6635_c0_g1	1340	1361	1351	-28.70	-19.00	0.662020905923345	10	2-5,1360-1357;7-18,1354-1343	1-1,1361-1361[UP5];6-6,1356-1355[AILt];19-21,1342-1340[UP3]	...((((((((((((..((((.&.))))-.))))))))))))...	AUUGAGAUGGAUUGGCCCCGAG&AUCGG-UUCAAUCUAUUUCUUU	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN6635_c0_g1_1351_TPlot.pdf
TRINITY_DN6635_c0_g1:1655	si_s78	TRINITY_DN6635_c0_g1	1644	1664	1655	-26.20	-21.60	0.824427480916031	6.5	1-19,1664-1646	20-21,1645-1644[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAAAGGAAGGGAAGGAAGAGA&UUUUUUUCUUUCCUUUCUUCU	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6635_c0_g1_1655_TPlot.pdf
TRINITY_DN6635_c0_g1:1668	si_s78	TRINITY_DN6635_c0_g1	1657	1677	1668	-26.20	-23.10	0.881679389312977	7	2-4,1676-1674;6-21,1672-1657	1-1,1677-1677[UP5];5-5,1673-1673[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GGAAGAGAGGAGAGGAUGAAC&UUUUUUUCUUUCCUUUCUUCU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6635_c0_g1_1668_TPlot.pdf
TRINITY_DN6635_c0_g1:2811	si_a161	TRINITY_DN6635_c0_g1	2799	2820	2811	-35.60	-23.60	0.662921348314607	7.5	3-9,2818-2812;11-15,2810-2806;16-21,2804-2799	1-2,2820-2819[UP5];10-10,2811-2811[SIL];x-x,2805-2805[BULt]	((((((.(((((.(((((((..&..))))))).)))))-))))))	AUGGGUGGAAUACGUUGACCAG&AAGGUCAAUCUAUUC-ACCCGU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a161_TRINITY_DN6635_c0_g1_2811_TPlot.pdf
TRINITY_DN6635_c0_g1:2951	si_s76	TRINITY_DN6635_c0_g1	2940	2960	2951	-23.60	-15.90	0.673728813559322	11.5	4-10,2957-2951;12-20,2949-2941	1-3,2960-2958[UP5];11-11,2950-2950[SIL];21-21,2940-2940[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	UGGAAAGGAAUGGGAAAGUAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6635_c0_g1_2951_TPlot.pdf
TRINITY_DN6635_c0_g1:2952	si_s75	TRINITY_DN6635_c0_g1	2941	2961	2952	-24.00	-16.40	0.683333333333333	8	1-3,2961-2959;5-11,2957-2951;13-21,2949-2941	4-4,2958-2958[SIL];12-12,2950-2950[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	GGAAAGGAAUGGGAAAGUAUG&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6635_c0_g1_2952_TPlot.pdf
TRINITY_DN66361_c0_g1:164	si_a376	TRINITY_DN66361_c0_g1	153	174	164	-23.90	-15.80	0.661087866108787	12.5	1-4,174-171;9-20,165-154	5-8,170-166[AILt];21-21,153-153[UP3]	.((((((((((((.....((((&))))-....)))))))))))).	GUGAUUCGAAGUCCAGGGUUGA&UCAA-AAAUGAUUUCGAAUUAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a376_TRINITY_DN66361_c0_g1_164_TPlot.pdf
TRINITY_DN66368_c0_g1:384	si_s73	TRINITY_DN66368_c0_g1	373	393	384	-24.00	-15.90	0.6625	9	2-12,392-382;14-21,380-373	1-1,393-393[UP5];13-13,381-381[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	AGAGGAAGUGGAGGAGGUAGC&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN66368_c0_g1_384_TPlot.pdf
TRINITY_DN66368_c0_g1:422	si_a787	TRINITY_DN66368_c0_g1	402	431	422	-26.30	-18.80	0.714828897338403	14.5	1-14,431-418;15-21,408-402	x-x,417-409[BULt]	(((((((.........((((((((((((((&))))))))))))))---------)))))))	UGGAGGAGGUAGUUCUUGGGGAAGUGGAAG&CUUCUAUUUUUCUA---------UUUUCCA	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN66368_c0_g1_422_TPlot.pdf
TRINITY_DN66368_c0_g1:423	si_a786	TRINITY_DN66368_c0_g1	403	432	423	-26.60	-17.60	0.661654135338346	15	1-15,432-418;16-21,408-403	x-x,417-409[BULt]	((((((.........(((((((((((((((&)))))))))))))))---------))))))	GGAGGAGGUAGUUCUUGGGGAAGUGGAAGG&UCUUCUAUUUUUCUA---------UUUUCC	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN66368_c0_g1_423_TPlot.pdf
TRINITY_DN6637_c0_g1:776	si_a702	TRINITY_DN6637_c0_g1	765	784	776	-30.80	-20.90	0.678571428571428	6.5	1-5,784-780;8-20,778-766	6-7,779-779[AILq];21-21,765-765[UP3]	.(((((((((((((.-(((((&)))))..))))))))))))).	AAUUUUGGGAUGUGA-AGUUG&CAACUGGUACAUUCCAAAAUA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN6637_c0_g1_776_TPlot.pdf
TRINITY_DN6637_c0_g1:777	si_a701	TRINITY_DN6637_c0_g1	766	785	777	-31.20	-20.80	0.666666666666667	6.5	2-6,784-780;9-21,778-766	1-1,785-785[UP5];7-8,779-779[AILq]	(((((((((((((.-(((((.&.)))))..)))))))))))))	AUUUUGGGAUGUGA-AGUUGG&ACAACUGGUACAUUCCAAAAU	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a701_TRINITY_DN6637_c0_g1_777_TPlot.pdf
TRINITY_DN6637_c0_g2:116	si_a79	TRINITY_DN6637_c0_g2	101	125	116	-22.20	-14.80	0.666666666666667	11.5	1-15,125-111;16-19,106-103	x-x,110-107[BULt];20-21,102-101[UP3]	..((((....(((((((((((((((&)))))))))))))))----))))..	GAUCUUUAGAGAUAGUGGGAGGCAA&UUGUUUUUCAUUAUU----AAGAAA	3	0.999999787662861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN6637_c0_g2_116_TPlot.pdf
TRINITY_DN6637_c0_g2:117	si_a78	TRINITY_DN6637_c0_g2	102	126	117	-22.30	-14.80	0.663677130044843	11.5	2-16,125-111;17-20,106-103	1-1,126-126[UP5];x-x,110-107[BULt];21-21,102-102[UP3]	.((((....(((((((((((((((.&.)))))))))))))))----)))).	AUCUUUAGAGAUAGUGGGAGGCAAC&AUUGUUUUUCAUUAUU----AAGAA	3	0.999999958800647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN6637_c0_g2_117_TPlot.pdf
TRINITY_DN6637_c0_g2:120	si_a75	TRINITY_DN6637_c0_g2	109	129	120	-21.30	-14.20	0.666666666666667	14	5-19,125-111	1-4,129-126[UP5];20-21,110-109[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAGAUAGUGGGAGGCAACGAG&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999998939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN6637_c0_g2_120_TPlot.pdf
TRINITY_DN663_c1_g1:493	si_a314	TRINITY_DN663_c1_g1	482	501	493	-27.10	-18.30	0.675276752767528	10.5	1-6,501-496;9-17,494-486	7-8,495-495[AILq];18-21,485-482[UP3]	....(((((((((.-((((((&))))))..)))))))))....	UCACGUCAUGGAUC-GUCCGA&UUGGAUUUAUCCAUGAUUUUU	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN663_c1_g1_493_TPlot.pdf
TRINITY_DN663_c1_g1:536	si_s696	TRINITY_DN663_c1_g1	525	545	536	-26.30	-18.10	0.688212927756654	6.5	1-14,545-532;16-20,530-526	15-15,531-531[SIL];21-21,525-525[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AACUAGAGGGUCGAUUGAUUA&UAAUUAGUCGAUUUAUUAGUG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN663_c1_g1_536_TPlot.pdf
TRINITY_DN663_c1_g1:537	si_s695	TRINITY_DN663_c1_g1	526	546	537	-24.70	-17.80	0.720647773279352	6	2-15,545-532;17-21,530-526	1-1,546-546[UP5];16-16,531-531[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	ACUAGAGGGUCGAUUGAUUAC&UUAAUUAGUCGAUUUAUUAGU	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN663_c1_g1_537_TPlot.pdf
TRINITY_DN663_c1_g1:980	si_a286	TRINITY_DN663_c1_g1	969	989	980	-28.30	-18.90	0.667844522968198	11.5	3-15,987-975	1-2,989-988[UP5];16-21,974-969[UP3]	......(((((((((((((..&..)))))))))))))......	UGCGUCAGAUCCGGGCGAUGG&AGAUCGCUUGGAUUUAAAAAA	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN663_c1_g1_980_TPlot.pdf
TRINITY_DN66407_c0_g1:51	si_a473	TRINITY_DN66407_c0_g1	40	60	51	-23.00	-15.78	0.686086956521739	4	2-14,59-47;18-21,43-40	1-1,60-60[UP5];15-17,46-44[SIL]	((((...(((((((((((((.&.)))))))))))))...))))	CUAUUCUACAAUAAUUACAUU&UAUGUAAUUAUUGUUAUAUAG	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN66407_c0_g1_51_TPlot.pdf
TRINITY_DN6640_c0_g1:1061	si_a632	TRINITY_DN6640_c0_g1	1050	1070	1061	-26.10	-20.80	0.796934865900383	11.5	5-20,1066-1051	1-4,1070-1067[UP5];21-21,1050-1050[UP3]	.((((((((((((((((....&....)))))))))))))))).	CCUCGAGAGGGUCGACAGAGA&AUUAUGUCGAUUUUUUUGAGU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN6640_c0_g1_1061_TPlot.pdf
TRINITY_DN6640_c0_g1:1368	si_a788	TRINITY_DN6640_c0_g1	1357	1377	1368	-24.80	-17.60	0.709677419354839	8	1-10,1377-1368;12-19,1366-1359	11-11,1367-1367[SIL];20-21,1358-1357[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	GAGGAGGAUAUGAAAGUGGAA&UUCUAUUUUUCUAUUUUCCAA	3	0.999992952957843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN6640_c0_g1_1368_TPlot.pdf
TRINITY_DN6640_c0_g1:1572	si_s75	TRINITY_DN6640_c0_g1	1561	1581	1572	-24.00	-16.20	0.675	9	3-10,1579-1572;12-21,1570-1561	1-2,1581-1580[UP5];11-11,1571-1571[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AGAAGGGAGACAAGAAGAGGU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6640_c0_g1_1572_TPlot.pdf
TRINITY_DN66422_c0_g1:953	si_s772	TRINITY_DN66422_c0_g1	942	963	953	-23.20	-16.00	0.689655172413793	9.5	1-9,963-955;10-17,953-946	x-x,954-954[BULt];18-21,945-942[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	CUUUUGGCAGUAUGUGGUUAAU&AUUAAUUAC-UAUUGCUAUAAA	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN66422_c0_g1_953_TPlot.pdf
TRINITY_DN6642_c0_g1:1360	si_s794	TRINITY_DN6642_c0_g1	1349	1368	1360	-31.20	-20.50	0.657051282051282	6.5	1-6,1368-1363;8-11,1362-1359;14-20,1356-1350	7-7,x-x[BULq];12-13,1358-1357[SIL];21-21,1349-1349[UP3]	.(((((((..((((-((((((&)))))).))))..))))))).	UGGAGAUAUUAUAC-AGCUUG&CAAGCUCGUAUUUUAUCUUCG	2	0.978364371173897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN6642_c0_g1_1360_TPlot.pdf
TRINITY_DN6642_c0_g1:1361	si_s793	TRINITY_DN6642_c0_g1	1350	1369	1361	-30.50	-21.30	0.698360655737705	4.5	1-7,1369-1363;9-12,1362-1359;15-21,1356-1350	8-8,x-x[BULq];13-14,1358-1357[SIL]	(((((((..((((-(((((((&))))))).))))..)))))))	GGAGAUAUUAUAC-AGCUUGU&ACAAGCUCGUAUUUUAUCUUC	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN6642_c0_g1_1361_TPlot.pdf
TRINITY_DN6643_c0_g1:724	si_a127	TRINITY_DN6643_c0_g1	712	733	724	-23.10	-16.70	0.722943722943723	7.5	1-13,733-721;14-17,719-716	x-x,720-720[BULt];18-21,715-712[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	ACAUUUGCUUAUUGCUAUGAGA&UUUUAUAGCAAUA-GUAAUUAA	1	0.0279378389041293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN6643_c0_g1_724_TPlot.pdf
TRINITY_DN6645_c0_g1:3066	si_s194	TRINITY_DN6645_c0_g1	3055	3075	3066	-30.30	-19.90	0.656765676567657	6.5	2-7,3074-3069;10-18,3066-3058;20-21,3056-3055	1-1,3075-3075[UP5];8-9,3068-3067[SIL];19-19,3057-3057[SIL]	((.(((((((((..((((((.&.))))))..))))))))).))	UGUUGCAUUCCAUUAUAAUCA&CGAUUAUUUUGGAAUGUACCA	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s194_TRINITY_DN6645_c0_g1_3066_TPlot.pdf
TRINITY_DN6645_c0_g1:3069	si_s191	TRINITY_DN6645_c0_g1	3058	3078	3069	-26.60	-19.00	0.714285714285714	11.5	5-10,3074-3069;13-21,3066-3058	1-4,3078-3075[UP5];11-12,3068-3067[SIL]	(((((((((..((((((....&....))))))..)))))))))	UGCAUUCCAUUAUAAUCAAUG&UAACGAUUAUUUUGGAAUGUA	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN6645_c0_g1_3069_TPlot.pdf
TRINITY_DN6645_c0_g1:3088	si_s42	TRINITY_DN6645_c0_g1	3076	3097	3088	-24.90	-16.50	0.662650602409639	8	3-12,3095-3086;13-20,3084-3077	1-2,3097-3096[UP5];x-x,3085-3085[BULt];21-21,3076-3076[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	AUGAAAUCCAAAUUAUUAGGUG&UCUUUAAUAAUU-GGAUUUCAA	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN6645_c0_g1_3088_TPlot.pdf
TRINITY_DN6645_c2_g1:88	si_a353	TRINITY_DN6645_c2_g1	75	97	88	-24.00	-16.20	0.675	8.5	4-15,94-83;16-21,80-75	1-3,97-95[UP5];x-x,82-81[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	CGGUCAAAAAAUGGAAUUAAAUC&AUAUUAAUUCUAUUU--UGAUCG	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN6645_c2_g1_88_TPlot.pdf
TRINITY_DN66461_c0_g1:51	si_a175	TRINITY_DN66461_c0_g1	40	60	51	-33.40	-23.76	0.711377245508982	8	1-14,60-47;19-20,42-41	15-18,46-43[SIL];21-21,40-40[UP3]	.((....((((((((((((((&))))))))))))))....)).	CGGUCAGUGUCUGGAUGGGUG&CACCCGUCUAGAUAAUAUCUU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN66461_c0_g1_51_TPlot.pdf
TRINITY_DN66461_c0_g1:54	si_a172	TRINITY_DN66461_c0_g1	43	63	54	-31.90	-24.90	0.780564263322884	9.5	3-17,61-47	1-2,63-62[UP5];18-21,46-43[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCAGUGUCUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN66461_c0_g1_54_TPlot.pdf
TRINITY_DN66461_c0_g1:55	si_a171	TRINITY_DN66461_c0_g1	44	64	55	-32.10	-24.90	0.775700934579439	10	4-18,61-47	1-3,64-62[UP5];19-21,46-44[UP3]	...(((((((((((((((...&...)))))))))))))))...	CAGUGUCUGGAUGGGUGACCG&UAUUCACCCGUCUAGAUAAUA	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN66461_c0_g1_55_TPlot.pdf
TRINITY_DN66461_c0_g1:58	si_a168	TRINITY_DN66461_c0_g1	47	75	58	-34.40	-25.50	0.741279069767442	18.5	2-6,74-70;7-21,61-47	1-1,75-75[UP5];x-x,69-62[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUCUGGAUGGGUGACCGAGCUUAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	0	0.00598557899594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN66461_c0_g1_58_TPlot.pdf
TRINITY_DN6646_c0_g2:2256	si_a454	TRINITY_DN6646_c0_g2	2245	2265	2256	-21.30	-14.40	0.676056338028169	11	3-17,2263-2249	1-2,2265-2264[UP5];18-21,2248-2245[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAAAUGUGUGAUAACGAUAA&UAAUUGUUGUUAUAUAUAAUA	2	0.999258117864311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN6646_c0_g2_2256_TPlot.pdf
TRINITY_DN6646_c0_g2:2361	si_a783	TRINITY_DN6646_c0_g2	2350	2371	2361	-24.70	-16.70	0.676113360323887	9	1-6,2371-2366;7-10,2364-2361;13-19,2358-2352	x-x,2365-2365[BULt];11-12,2360-2359[SIL];20-21,2351-2350[UP3]	..(((((((..((((.((((((&))))))-))))..)))))))..	AUAUGGAGAUUUAGAGAGAGUU&AACUCU-UCUAUUUUUCUAUUU	2	0.999999990482036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN6646_c0_g2_2361_TPlot.pdf
TRINITY_DN6646_c0_g2:2799	si_a703	TRINITY_DN6646_c0_g2	2788	2808	2799	-29.20	-19.20	0.657534246575342	10	2-13,2807-2796	1-1,2808-2808[UP5];14-21,2795-2788[UP3]	........((((((((((((.&.))))))))))))........	CUAUAAUUGAAUGUGCCAGUG&AACUGGUACAUUCCAAAAUAA	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN6646_c0_g2_2799_TPlot.pdf
TRINITY_DN6646_c0_g2:844	si_a415	TRINITY_DN6646_c0_g2	833	853	844	-18.10	-11.80	0.651933701657459	7	3-17,851-837	1-2,853-852[UP5];18-21,836-833[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAGAUUUAUUUAAAUAUAUG&UUUAUAUUUAAAUAAAUAUAG	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN6646_c0_g2_844_TPlot.pdf
TRINITY_DN6646_c1_g1:3445	si_a413	TRINITY_DN6646_c1_g1	3434	3454	3445	-18.40	-12.10	0.657608695652174	8.5	1-15,3454-3440	16-21,3439-3434[UP3]	......(((((((((((((((&)))))))))))))))......	UAUGGAGUUUAGAUAUAAAUA&UGUUUAUAUUUAAAUAAAUAU	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN6646_c1_g1_3445_TPlot.pdf
TRINITY_DN6646_c1_g1:3448	si_a410	TRINITY_DN6646_c1_g1	3437	3457	3448	-17.80	-14.10	0.792134831460674	6	2-18,3456-3440	1-1,3457-3457[UP5];19-21,3439-3437[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GGAGUUUAGAUAUAAAUAAAG&UUUUGUUUAUAUUUAAAUAAA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6646_c1_g1_3448_TPlot.pdf
TRINITY_DN6646_c1_g1:3449	si_a409	TRINITY_DN6646_c1_g1	3438	3458	3449	-19.50	-14.50	0.743589743589744	6	2-19,3457-3440	1-1,3458-3458[UP5];20-21,3439-3438[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	GAGUUUAGAUAUAAAUAAAGA&GUUUUGUUUAUAUUUAAAUAA	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6646_c1_g1_3449_TPlot.pdf
TRINITY_DN6646_c1_g1:3635	si_s76	TRINITY_DN6646_c1_g1	3624	3644	3635	-23.60	-16.50	0.699152542372881	6	1-6,3644-3639;8-18,3637-3627	7-7,3638-3638[SIL];19-21,3626-3624[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	CAUAAAGGAAAGAAUGAAAAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6646_c1_g1_3635_TPlot.pdf
TRINITY_DN6646_c1_g1:3639	si_s72	TRINITY_DN6646_c1_g1	3628	3648	3639	-24.10	-17.00	0.705394190871369	8	4-10,3645-3639;12-21,3637-3628	1-3,3648-3646[UP5];11-11,3638-3638[SIL]	((((((((((.(((((((...&...))))))).))))))))))	AAGGAAAGAAUGAAAAUACAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6646_c1_g1_3639_TPlot.pdf
TRINITY_DN6646_c1_g1:3641	si_s70	TRINITY_DN6646_c1_g1	3630	3650	3641	-25.80	-16.80	0.651162790697674	5	2-4,3649-3647;6-12,3645-3639;14-21,3637-3630	1-1,3650-3650[UP5];5-5,3646-3646[SIL];13-13,3638-3638[SIL]	((((((((.(((((((.(((.&.))).))))))).))))))))	GGAAAGAAUGAAAAUACAAGA&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6646_c1_g1_3641_TPlot.pdf
TRINITY_DN6646_c1_g1:3818	si_s81	TRINITY_DN6646_c1_g1	3805	3828	3818	-28.90	-19.20	0.664359861591695	10	1-9,3828-3820;10-12,3818-3816;14-21,3812-3805	x-x,3819-3819[BULt];13-13,3815-3813[AILt]	((((((((...(((.(((((((((&)))))))))-)))--.))))))))	AGAAGAAGUAUGAGUGAAAGAGGA&UUUUCUUUC-CUU--UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6646_c1_g1_3818_TPlot.pdf
TRINITY_DN6646_c1_g1:386	si_s68	TRINITY_DN6646_c1_g1	375	395	386	-23.10	-15.30	0.662337662337662	12	6-21,390-375	1-5,395-391[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGAAGAAGAAUAGGCAAAU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6646_c1_g1_386_TPlot.pdf
TRINITY_DN66474_c0_g1:1018	si_a784	TRINITY_DN66474_c0_g1	1006	1027	1018	-24.70	-18.10	0.732793522267207	8.5	1-12,1027-1016;13-17,1014-1010;20-21,1007-1006	x-x,1015-1015[BULt];18-19,1009-1008[SIL]	((..(((((.((((((((((((&))))))))))))-)))))..))	GAUUUGGAGAAGAUGGAGGAGU&ACUCUUCUAUUU-UUCUAUUUU	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN66474_c0_g1_1018_TPlot.pdf
TRINITY_DN66474_c0_g1:178	si_s806	TRINITY_DN66474_c0_g1	166	187	178	-28.60	-18.80	0.657342657342657	11.5	4-10,184-178;11-16,176-171;18-21,169-166	1-3,187-185[UP5];x-x,177-177[BULt];17-17,170-170[SIL]	((((.((((((.(((((((...&...)))))))-)))))).))))	GAGGUGAGGUGCACGGAGACGC&UUAUCUUCGU-UACCUUUUCUU	4	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN66474_c0_g1_178_TPlot.pdf
TRINITY_DN66474_c0_g1:275	si_a494	TRINITY_DN66474_c0_g1	264	284	275	-29.50	-20.10	0.68135593220339	15.5	6-11,279-274;13-21,272-264	1-5,284-280[UP5];12-12,273-273[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GAAGGCGGGUGGCGGCGGGGA&AAUAUGUCGUUUUUCGUCUUC	4	0.999999971713079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN66474_c0_g1_275_TPlot.pdf
TRINITY_DN66474_c0_g1:937	si_a791	TRINITY_DN66474_c0_g1	926	949	937	-26.50	-18.00	0.679245283018868	11	1-8,949-942;9-20,938-927	x-x,941-939[BULt];21-21,926-926[UP3]	.((((((((((((...((((((((&))))))))---)))))))))))).	AGAUUGGGAAGUGUGCGAAGAAUG&UAUUUUUC---UAUUUUCCAAUCC	2	0.99811317359439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN66474_c0_g1_937_TPlot.pdf
TRINITY_DN66491_c0_g1:18	si_s47	TRINITY_DN66491_c0_g1	6	27	18	-26.30	-17.60	0.669201520912548	6	2-16,26-12;18-21,9-6	1-1,27-27[UP5];17-17,11-10[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	UUAAAAUUGGAAUCCAGUUGUA&AAUAAUUGGAUUUCAA-GUUAG	0	0.0983794155801931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN66491_c0_g1_18_TPlot.pdf
TRINITY_DN66491_c0_g1:19	si_s46	TRINITY_DN66491_c0_g1	8	28	19	-25.00	-17.60	0.704	9.5	3-17,26-12	1-2,28-27[UP5];18-21,11-8[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAAUUGGAAUCCAGUUGUAG&UAAUAAUUGGAUUUCAAGUUA	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN66491_c0_g1_19_TPlot.pdf
TRINITY_DN66491_c0_g1:24	si_s41	TRINITY_DN66491_c0_g1	13	33	24	-25.00	-16.60	0.664	15.5	8-21,26-13	1-7,33-27[UP5]	((((((((((((((.......&.......))))))))))))))	UGGAAUCCAGUUGUAGACAAA&AUCUUUAAUAAUUGGAUUUCA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN66491_c0_g1_24_TPlot.pdf
TRINITY_DN66494_c0_g1:91	si_s499	TRINITY_DN66494_c0_g1	80	100	91	-22.60	-16.30	0.721238938053097	11.5	6-19,95-82	1-5,100-96[UP5];20-21,81-80[UP3]	..((((((((((((((.....&.....))))))))))))))..	CCGGAAUUGUUUUGUUAUAGC&AUAUAAACAAAACAAUUCUAU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN66494_c0_g1_91_TPlot.pdf
TRINITY_DN6649_c0_g1:1443	si_s471	TRINITY_DN6649_c0_g1	1430	1452	1443	-32.00	-21.10	0.659375	10	1-12,1452-1441;13-16,1438-1435	x-x,1440-1439[BULt];17-21,1434-1430[UP3]	.....((((..((((((((((((&))))))))))))--)))).....	UCAGGAGGACCUCUGUUGGAUAU&AUAUCCAACGGA--UCCUAUAUU	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s471_TRINITY_DN6649_c0_g1_1443_TPlot.pdf
TRINITY_DN6649_c0_g1:1452	si_a409	TRINITY_DN6649_c0_g1	1441	1461	1452	-19.50	-12.90	0.661538461538462	8	1-6,1461-1456;8-17,1454-1445	7-7,1455-1455[SIL];18-21,1444-1441[UP3]	....((((((((((.((((((&)))))).))))))))))....	UCUGUUGGAUAUAAUCGAAAC&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6649_c0_g1_1452_TPlot.pdf
TRINITY_DN6649_c0_g1:1553	si_s635	TRINITY_DN6649_c0_g1	1543	1562	1553	-39.80	-26.30	0.660804020100503	7.5	1-10,1562-1553;12-14,1552-1550;16-21,1548-1543	11-11,x-x[BULq];15-15,1549-1549[SIL]	((((((.(((-((((((((((&)))))))))).))).))))))	CGAGGGGGAA-GUUUGCGAGA&UUUCGUAGGCGUUUGCCCUCG	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN6649_c0_g1_1553_TPlot.pdf
TRINITY_DN6653_c0_g1:1965	si_a639	TRINITY_DN6653_c0_g1	1954	1974	1965	-23.60	-15.90	0.673728813559322	7.5	3-9,1972-1966;11-21,1964-1954	1-2,1974-1973[UP5];10-10,1965-1965[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AUGUAUUACUCUGGAAAAUGU&CGAUUUUUUUGAGUAAUAUAU	2	0.999708299024427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN6653_c0_g1_1965_TPlot.pdf
TRINITY_DN66551_c0_g1:352	si_a73	TRINITY_DN66551_c0_g1	340	361	352	-21.90	-15.30	0.698630136986301	3.5	1-3,361-359;5-15,357-347;16-21,345-340	4-4,358-358[SIL];x-x,346-346[BULt]	((((((.(((((((((((.(((&))).)))))))))))-))))))	AAUAGUGGAAAAACAAUUAGAA&UUCAAAUUGUUUUUC-AUUAUU	4	0.99999927711518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN66551_c0_g1_352_TPlot.pdf
TRINITY_DN66551_c0_g1:358	si_a67	TRINITY_DN66551_c0_g1	347	368	358	-27.20	-17.70	0.650735294117647	6	2-8,367-361;9-9,359-359;11-21,357-347	1-1,368-368[UP5];x-x,360-360[BULt];10-10,358-358[SIL]	(((((((((((.(.(((((((.&.)))))))-).)))))))))))	GAAAAACAAUUAGAAAAGGAGG&GCUUCUUU-CAAAUUGUUUUUC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN66551_c0_g1_358_TPlot.pdf
TRINITY_DN66563_c0_g1:160	si_s892	TRINITY_DN66563_c0_g1	149	169	160	-29.50	-21.10	0.715254237288136	12	5-7,165-163;9-21,161-149	1-4,169-166[UP5];8-8,162-162[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GUUGGAGAGAGGGGCUACUGU&UAAAUAGGCUUUCUCUUCAAU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN66563_c0_g1_160_TPlot.pdf
TRINITY_DN66569_c0_g1:175	si_a319	TRINITY_DN66569_c0_g1	164	184	175	-22.40	-15.00	0.669642857142857	10.5	5-7,180-178;9-21,176-164	1-4,184-181[UP5];8-8,177-177[SIL]	(((((((((((((.(((....&....))).)))))))))))))	AAUGAAAAAGUCAAGGACUCA&UUUAUCCAUGAUUUUUUUAUU	2	0.999999980890888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN66569_c0_g1_175_TPlot.pdf
TRINITY_DN6656_c0_g2:5929	si_a758	TRINITY_DN6656_c0_g2	5918	5939	5929	-34.00	-23.10	0.679411764705882	8.5	1-4,5939-5936;5-17,5934-5922	x-x,5935-5935[BULt];18-21,5921-5918[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	GAAACAGAAAUCCAGAGCGAGG&CCUC-CUUUGGGUUUUUGAUUG	4	0.999905642443979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6656_c0_g2_5929_TPlot.pdf
TRINITY_DN6656_c0_g2:6261	si_a494	TRINITY_DN6656_c0_g2	6250	6269	6261	-29.50	-19.30	0.654237288135593	6.5	2-7,6268-6263;9-20,6262-6251	1-1,6269-6269[UP5];8-8,x-x[BULq];21-21,6250-6250[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AAAGACGAGAGAU-ACAUAUG&AAUAUGUCGUUUUUCGUCUUC	2	0.999999997991451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN6656_c0_g2_6261_TPlot.pdf
TRINITY_DN6656_c0_g2:6262	si_a493	TRINITY_DN6656_c0_g2	6251	6270	6262	-29.50	-19.30	0.654237288135593	7.5	3-8,6268-6263;10-21,6262-6251	1-2,6270-6269[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	AAGACGAGAGAU-ACAUAUGA&GAAUAUGUCGUUUUUCGUCUU	4	0.999999985387986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN6656_c0_g2_6262_TPlot.pdf
TRINITY_DN6657_c0_g1:1078	si_a896	TRINITY_DN6657_c0_g1	1067	1087	1078	-21.60	-14.30	0.662037037037037	11	3-15,1085-1073	1-2,1087-1086[UP5];16-21,1072-1067[UP3]	......(((((((((((((..&..)))))))))))))......	CCCAAAUACUUGUUAUUGCAU&UAGUAAUAAUAAGUAAUAUAA	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN6657_c0_g1_1078_TPlot.pdf
TRINITY_DN6657_c0_g1:1079	si_a895	TRINITY_DN6657_c0_g1	1068	1088	1079	-21.70	-14.30	0.658986175115207	12	4-16,1085-1073	1-3,1088-1086[UP5];17-21,1072-1068[UP3]	.....(((((((((((((...&...))))))))))))).....	CCAAAUACUUGUUAUUGCAUU&AUAGUAAUAAUAAGUAAUAUA	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN6657_c0_g1_1079_TPlot.pdf
TRINITY_DN6658_c0_g1:288	si_a544	TRINITY_DN6658_c0_g1	273	297	288	-28.90	-20.60	0.71280276816609	9	3-14,295-284;15-21,279-273	1-2,297-296[UP5];x-x,283-280[BULt]	(((((((....((((((((((((..&..))))))))))))----)))))))	UGAAGGAGCAUAUGGAUUGAACCAA&UCGGUUCAAUCUAU----UUCUUUA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN6658_c0_g1_288_TPlot.pdf
TRINITY_DN6658_c0_g1:334	si_a313	TRINITY_DN6658_c0_g1	323	340	334	-28.70	-20.40	0.710801393728223	7	1-7,340-334;11-21,333-323	8-10,x-x[BULq]	(((((((((((---(((((((&)))))))...)))))))))))	GAAAUUAUGGA---AUCCAAG&CUUGGAUUUAUCCAUGAUUUU	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN6658_c0_g1_334_TPlot.pdf
TRINITY_DN6658_c0_g1:342	si_s40	TRINITY_DN6658_c0_g1	331	351	342	-24.30	-16.10	0.662551440329218	10.5	3-5,349-347;7-10,345-342;13-21,339-331	1-2,351-350[UP5];6-6,346-346[SIL];11-12,341-340[SIL]	(((((((((..((((.(((..&..))).))))..)))))))))	GGAAUCCAAGGAUUAUGGAAC&AAUCUUUAAUAAUUGGAUUUC	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN6658_c0_g1_342_TPlot.pdf
TRINITY_DN6658_c0_g1:505	si_a318	TRINITY_DN6658_c0_g1	494	514	505	-22.50	-15.40	0.684444444444444	12.5	6-18,509-497	1-5,514-510[UP5];19-21,496-494[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCAAGAAAUCAUGGAACAAA&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999391695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN6658_c0_g1_505_TPlot.pdf
TRINITY_DN6658_c0_g1:506	si_a317	TRINITY_DN6658_c0_g1	495	516	506	-24.30	-17.70	0.728395061728395	6.5	1-5,516-512;7-19,509-497	6-6,511-510[AILt];20-21,496-495[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	CCAAGAAAUCAUGGAACAAAUC&GAUUU-AUCCAUGAUUUUUUUA	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN6658_c0_g1_506_TPlot.pdf
TRINITY_DN665_c0_g1:4568	si_s77	TRINITY_DN665_c0_g1	4557	4577	4568	-25.50	-17.80	0.698039215686275	5.5	2-17,4576-4561	1-1,4577-4577[UP5];18-21,4560-4557[UP3]	....((((((((((((((((.&.))))))))))))))))....	UAUUGAAGGAAAGAAAAAAAC&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN665_c0_g1_4568_TPlot.pdf
TRINITY_DN665_c0_g1:4570	si_s75	TRINITY_DN665_c0_g1	4559	4579	4570	-24.00	-17.80	0.741666666666667	7.5	4-19,4576-4561	1-3,4579-4577[UP5];20-21,4560-4559[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGAAGGAAAGAAAAAAACUU&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999999599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN665_c0_g1_4570_TPlot.pdf
TRINITY_DN665_c0_g1:4572	si_s73	TRINITY_DN665_c0_g1	4561	4581	4572	-24.00	-17.80	0.741666666666667	9.5	6-21,4576-4561	1-5,4581-4577[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGGAAAGAAAAAAACUUAU&UCUAUUUUUUUUCUUUCCUUU	2	0.999998453644978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN665_c0_g1_4572_TPlot.pdf
TRINITY_DN665_c0_g1:4573	si_s72	TRINITY_DN665_c0_g1	4562	4582	4573	-24.10	-16.70	0.692946058091286	11	7-21,4576-4562	1-6,4582-4577[UP5]	(((((((((((((((......&......)))))))))))))))	AAGGAAAGAAAAAAACUUAUG&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN665_c0_g1_4573_TPlot.pdf
TRINITY_DN66602_c0_g1:241	si_a323	TRINITY_DN66602_c0_g1	230	252	241	-26.80	-17.60	0.656716417910448	8.5	1-5,252-248;6-15,245-236;18-21,233-230	x-x,247-246[BULt];16-17,235-234[SIL]	((((..((((((((((..(((((&)))))--))))))))))..))))	AGGGCUUAAGAAAAUCGAGUGGA&UCCAU--GAUUUUUUUAUUCCUU	2	0.999988950423756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN66602_c0_g1_241_TPlot.pdf
TRINITY_DN6661_c0_g1:792	si_s48	TRINITY_DN6661_c0_g1	781	802	792	-28.80	-20.20	0.701388888888889	11	1-8,802-795;13-21,789-781	9-12,794-790[AILt]	(((((((((.....((((((((&))))))))-....)))))))))	GCUAACUUGUUCUCCCGAUUAU&AUAAUUGG-AUUUCAAGUUAGC	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN6661_c0_g1_792_TPlot.pdf
TRINITY_DN66622_c0_g1:176	si_s93	TRINITY_DN66622_c0_g1	164	187	176	-34.80	-23.00	0.660919540229885	9	2-7,186-181;8-10,178-176;11-21,174-164	1-1,187-187[UP5];x-x,180-179[BULt];x-x,175-175[BULt]	(((((((((((.(((..((((((.&.))))))--)))-)))))))))))	AGUCUGAAGCGAAAGUCGAGAAGU&UCUUCUU--CUU-CGCUUCGGAUU	0	0.500632149656031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN66622_c0_g1_176_TPlot.pdf
TRINITY_DN66627_c0_g1:257	si_a337	TRINITY_DN66627_c0_g1	246	266	257	-30.80	-20.30	0.659090909090909	11	2-12,265-255	1-1,266-266[UP5];13-21,254-246[UP3]	.........(((((((((((.&.))))))))))).........	GACGAAAAUGGGACAGGGAAG&AUUCCUUGUCCCGAAAAUAUU	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN66627_c0_g1_257_TPlot.pdf
TRINITY_DN66627_c0_g1:259	si_a335	TRINITY_DN66627_c0_g1	248	268	259	-31.10	-20.30	0.652733118971061	13	4-14,265-255	1-3,268-266[UP5];15-21,254-248[UP3]	.......(((((((((((...&...))))))))))).......	CGAAAAUGGGACAGGGAAGAG&UUAUUCCUUGUCCCGAAAAUA	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN66627_c0_g1_259_TPlot.pdf
TRINITY_DN66627_c0_g1:265	si_a329	TRINITY_DN66627_c0_g1	254	278	265	-29.60	-21.56	0.728378378378378	14.5	1-7,278-272;10-20,265-255	8-9,271-266[AILt];21-21,254-254[UP3]	.(((((((((((......(((((((&)))))))----..))))))))))).	UGGGACAGGGAAGAGUAUGAAAAAU&AUUUUUU----UAUUCCUUGUCCCG	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN66627_c0_g1_265_TPlot.pdf
TRINITY_DN66627_c0_g1:267	si_a327	TRINITY_DN66627_c0_g1	256	280	267	-28.40	-20.36	0.716901408450704	14.5	1-9,280-272;12-21,265-256	10-11,271-266[AILt]	((((((((((......(((((((((&)))))))))----..))))))))))	GGACAGGGAAGAGUAUGAAAAAUUA&UGAUUUUUU----UAUUCCUUGUCC	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN66627_c0_g1_267_TPlot.pdf
TRINITY_DN66627_c0_g1:298	si_s77	TRINITY_DN66627_c0_g1	284	307	298	-25.50	-17.10	0.670588235294118	9.5	1-11,307-297;12-14,293-291;16-21,289-284	x-x,296-294[BULt];15-15,290-290[SIL]	((((((.(((...(((((((((((&)))))))))))---))).))))))	GAGGAACGGAUAAAAGAGGAAAAA&UUUUUUUUCUU---UCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN66627_c0_g1_298_TPlot.pdf
TRINITY_DN66627_c0_g1:299	si_s76	TRINITY_DN66627_c0_g1	284	308	299	-23.60	-15.60	0.661016949152542	10	1-12,308-297;13-15,293-291;16-21,289-284	x-x,296-294[BULt];x-x,290-290[BULt]	((((((.(((...((((((((((((&))))))))))))---)))-))))))	GAGGAACGGAUAAAAGAGGAAAAAU&AUUUUUUUUCUU---UCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN66627_c0_g1_299_TPlot.pdf
TRINITY_DN66627_c0_g1:333	si_s77	TRINITY_DN66627_c0_g1	317	342	333	-25.50	-16.70	0.654901960784314	11	1-11,342-332;12-13,327-326;14-21,324-317	x-x,331-328[BULt];x-x,325-325[BULt]	((((((((.((....(((((((((((&)))))))))))----))-))))))))	GAAGAAGGCGACAACAAGAAAAAAGG&UUUUUUUUCUU----UC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN66627_c0_g1_333_TPlot.pdf
TRINITY_DN66627_c0_g1:682	si_s83	TRINITY_DN66627_c0_g1	671	706	682	-30.90	-22.10	0.715210355987055	31.5	1-9,706-698;10-21,682-671	x-x,697-683[BULt]	((((((((((((...............(((((((((&)))))))))---------------))))))))))))	GAAGAGGAAGAAAAGUUAAAAGAAUACAGGAAGGAA&UUCUUUCCU---------------UUCUUCUUCUUC	3	0.999999999996899	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN66627_c0_g1_682_TPlot.pdf
TRINITY_DN66627_c0_g1:712	si_s71	TRINITY_DN66627_c0_g1	698	721	712	-25.70	-18.10	0.704280155642023	9.5	1-5,721-717;7-11,715-711;12-21,707-698	6-6,716-716[SIL];x-x,710-708[BULt]	((((((((((...(((((.(((((&))))).)))))---))))))))))	AGGAAGGAAAAACGAAAAGAGAAG&CUUCUAUUUUU---UUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN66627_c0_g1_712_TPlot.pdf
TRINITY_DN66627_c0_g1:713	si_s70	TRINITY_DN66627_c0_g1	699	722	713	-25.80	-16.90	0.655038759689922	10.5	2-6,721-717;8-12,715-711;13-21,707-699	1-1,722-722[UP5];7-7,716-716[SIL];x-x,710-708[BULt]	(((((((((...(((((.(((((.&.))))).)))))---)))))))))	GGAAGGAAAAACGAAAAGAGAAGA&ACUUCUAUUUUU---UUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN66627_c0_g1_713_TPlot.pdf
TRINITY_DN66627_c0_g1:727	si_a785	TRINITY_DN66627_c0_g1	716	736	727	-25.90	-19.30	0.745173745173745	4.5	1-6,736-731;8-15,729-722;17-21,720-716	7-7,730-730[SIL];16-16,721-721[SIL]	(((((.((((((((.((((((&)))))).)))))))).)))))	GAGAAGAGAAAGAUUGAAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999676662161265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN66627_c0_g1_727_TPlot.pdf
TRINITY_DN66627_c0_g1:76	si_s444	TRINITY_DN66627_c0_g1	61	85	76	-22.80	-16.50	0.723684210526316	10	1-14,85-72;15-20,67-62	x-x,71-68[BULt];21-21,61-61[UP3]	.((((((....((((((((((((((&))))))))))))))----)))))).	UUUGUUGGUAUUUAUGUGUGGUGUG&CAUAUUAUAUAUAA----CAACAAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN66627_c0_g1_76_TPlot.pdf
TRINITY_DN6664_c0_g1:811	si_a779	TRINITY_DN6664_c0_g1	800	820	811	-27.00	-17.90	0.662962962962963	7	1-8,820-813;10-16,811-805;19-21,802-800	9-9,812-812[SIL];17-18,804-803[SIL]	(((..(((((((.((((((((&)))))))).)))))))..)))	GGAUUGAUAGAAUGGUUGAGU&AUUCAACUCUUCUAUUUUUCU	4	0.999999214893531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN6664_c0_g1_811_TPlot.pdf
TRINITY_DN6665_c0_g1:868	si_a109	TRINITY_DN6665_c0_g1	857	877	868	-28.50	-19.00	0.666666666666667	9.5	2-7,876-871;10-20,868-858	1-1,877-877[UP5];8-9,870-869[SIL];21-21,857-857[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	UAGCGGGCUUGUCAUUUGUCA&AGAUAAAAUACGAGCUUGUUU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN6665_c0_g1_868_TPlot.pdf
TRINITY_DN6666_c0_g1:1034	si_a110	TRINITY_DN6666_c0_g1	1023	1043	1034	-27.80	-18.50	0.665467625899281	7	1-11,1043-1033;14-20,1030-1024	12-13,1032-1031[SIL];21-21,1023-1023[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	UAGGCAGGGCCGUAUUUUGUU&GAUAAAAUACGAGCUUGUUUU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN6666_c0_g1_1034_TPlot.pdf
TRINITY_DN6666_c0_g1:1035	si_a109	TRINITY_DN6666_c0_g1	1024	1044	1035	-28.50	-18.70	0.656140350877193	6.5	2-12,1043-1033;15-21,1030-1024	1-1,1044-1044[UP5];13-14,1032-1031[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AGGCAGGGCCGUAUUUUGUUA&AGAUAAAAUACGAGCUUGUUU	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN6666_c0_g1_1035_TPlot.pdf
TRINITY_DN6666_c0_g1:1063	si_a377	TRINITY_DN6666_c0_g1	1051	1073	1063	-24.50	-17.00	0.693877551020408	3.5	1-8,1073-1066;9-16,1064-1057;17-21,1055-1051	x-x,1065-1065[BULt];x-x,1056-1056[BULt]	(((((.((((((((.((((((((&))))))))-))))))))-)))))	CUUAACUUUGAAAUACAUUUUUG&CAAAAAUG-AUUUCGAA-UUAAG	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a377_TRINITY_DN6666_c0_g1_1063_TPlot.pdf
TRINITY_DN6666_c0_g1:1171	si_s86	TRINITY_DN6666_c0_g1	1160	1185	1171	-32.90	-21.60	0.656534954407295	15	1-6,1185-1180;7-19,1174-1162	x-x,1179-1175[BULt];20-21,1161-1160[UP3]	..(((((((((((((.....((((((&))))))-----)))))))))))))..	AAUGAGGAAGAAGAAAACAAGGGAGA&UUUCCU-----UUCUUCUUCUUCGCU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6666_c0_g1_1171_TPlot.pdf
TRINITY_DN6666_c0_g1:1173	si_s84	TRINITY_DN6666_c0_g1	1162	1187	1173	-32.30	-21.80	0.674922600619195	16.5	3-8,1185-1180;9-20,1174-1163	1-2,1187-1186[UP5];x-x,1179-1175[BULt];21-21,1162-1162[UP3]	.((((((((((((.....((((((..&..))))))-----)))))))))))).	UGAGGAAGAAGAAAACAAGGGAGAAA&UCUUUCCU-----UUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6666_c0_g1_1173_TPlot.pdf
TRINITY_DN6667_c0_g1:2476	si_a110	TRINITY_DN6667_c0_g1	2465	2485	2476	-27.80	-18.90	0.679856115107914	10.5	5-14,2481-2472;16-21,2470-2465	1-4,2485-2482[UP5];15-15,2471-2471[SIL]	((((((.((((((((((....&....)))))))))).))))))	GAAGCGCGCUCGUGUUUGUGU&GAUAAAAUACGAGCUUGUUUU	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN6667_c0_g1_2476_TPlot.pdf
TRINITY_DN66685_c0_g1:1095	si_s809	TRINITY_DN66685_c0_g1	1084	1104	1095	-28.50	-18.90	0.663157894736842	10	2-14,1103-1091;16-17,1089-1088	1-1,1104-1104[UP5];15-15,1090-1090[SIL];18-21,1087-1084[UP3]	....((.(((((((((((((.&.))))))))))))).))....	CGGUGGUGAAGGUGGCGGAGC&UCUUCGUUACCUUUUCUUAAU	4	0.999999999597446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN66685_c0_g1_1095_TPlot.pdf
TRINITY_DN66685_c0_g1:1098	si_s806	TRINITY_DN66685_c0_g1	1087	1107	1098	-28.60	-18.90	0.660839160839161	13	5-17,1103-1091;19-20,1089-1088	1-4,1107-1104[UP5];18-18,1090-1090[SIL];21-21,1087-1087[UP3]	.((.(((((((((((((....&....))))))))))))).)).	UGGUGAAGGUGGCGGAGCCGA&UUAUCUUCGUUACCUUUUCUU	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN66685_c0_g1_1098_TPlot.pdf
TRINITY_DN66685_c0_g1:1102	si_s802	TRINITY_DN66685_c0_g1	1091	1110	1102	-26.40	-18.40	0.696969696969697	9.5	1-5,1110-1106;9-21,1103-1091	6-8,1105-1104[AILq]	(((((((((((((..-(((((&)))))...)))))))))))))	GAAGGUGGCGGAGCC-GAAUA&UAUUUUAUCUUCGUUACCUUU	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN66685_c0_g1_1102_TPlot.pdf
TRINITY_DN66685_c0_g1:1103	si_s801	TRINITY_DN66685_c0_g1	1092	1111	1103	-28.20	-20.40	0.723404255319149	9	1-6,1111-1106;10-21,1103-1092	7-9,1105-1104[AILq]	((((((((((((..-((((((&))))))...))))))))))))	AAGGUGGCGGAGCC-GAAUAC&GUAUUUUAUCUUCGUUACCUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN66685_c0_g1_1103_TPlot.pdf
TRINITY_DN66685_c0_g1:1374	si_a50	TRINITY_DN66685_c0_g1	1362	1382	1374	-41.50	-27.60	0.665060240963855	7	1-2,1382-1381;4-11,1380-1373;13-18,1371-1366;19-20,1364-1363	3-3,x-x[BULq];12-12,1372-1372[SIL];x-x,1365-1365[BULt];21-21,1362-1362[UP3]	.((.((((((.((((((((-((&)).)))))))).))))))-)).	CAGACGAGUCCGCUCCUAG-CC&GGUCUAGGAGUCGACUCG-CUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN66685_c0_g1_1374_TPlot.pdf
TRINITY_DN66696_c0_g1:321	si_a789	TRINITY_DN66696_c0_g1	310	331	321	-24.80	-17.30	0.69758064516129	11.5	1-6,331-326;7-18,324-313	x-x,325-325[BULt];19-21,312-310[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	UGGGGGAAAUGGAGGCGGUGGA&UCUAUU-UUUCUAUUUUCCAAU	0	0.288729362735454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN66696_c0_g1_321_TPlot.pdf
TRINITY_DN6669_c0_g1:3762	si_a318	TRINITY_DN6669_c0_g1	3751	3771	3762	-22.50	-16.20	0.72	5.5	2-12,3770-3760;15-15,3757-3757;18-21,3754-3751	1-1,3771-3771[UP5];13-14,3759-3758[SIL];16-17,3756-3755[SIL]	((((..(..(((((((((((.&.)))))))))))..)..))))	GUAAUUAUUUCAUGGAUAAAA&AUUUAUCCAUGAUUUUUUUAU	3	0.999978973648723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN6669_c0_g1_3762_TPlot.pdf
TRINITY_DN6669_c0_g1:4356	si_a783	TRINITY_DN6669_c0_g1	4338	4365	4356	-24.70	-17.50	0.708502024291498	13.5	3-13,4363-4353;14-21,4345-4338	1-2,4365-4364[UP5];x-x,4352-4346[BULt]	((((((((.......(((((((((((..&..)))))))))))-------))))))))	AAAUAGAACUGCGUUGAGUGGAGGAGGU&AACUCUUCUAUUU-------UUCUAUUU	4	0.999999696230004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN6669_c0_g1_4356_TPlot.pdf
TRINITY_DN6669_c0_g1:4468	si_a409	TRINITY_DN6669_c0_g1	4457	4477	4468	-19.50	-13.40	0.687179487179487	9.5	1-13,4477-4465	14-21,4464-4457[UP3]	........(((((((((((((&)))))))))))))........	UAAAUAUUGUAUAAACAAAGC&GUUUUGUUUAUAUUUAAAUAA	2	0.999990832177071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6669_c0_g1_4468_TPlot.pdf
TRINITY_DN6669_c0_g1:4469	si_a408	TRINITY_DN6669_c0_g1	4458	4478	4469	-20.10	-14.40	0.716417910447761	8.5	1-14,4478-4465	15-21,4464-4458[UP3]	.......((((((((((((((&)))))))))))))).......	AAAUAUUGUAUAAACAAAGCA&UGUUUUGUUUAUAUUUAAAUA	2	0.997754019103068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN6669_c0_g1_4469_TPlot.pdf
TRINITY_DN6669_c0_g1:4470	si_a407	TRINITY_DN6669_c0_g1	4459	4479	4470	-19.80	-15.30	0.772727272727273	7.5	1-15,4479-4465	16-21,4464-4459[UP3]	......(((((((((((((((&)))))))))))))))......	AAUAUUGUAUAAACAAAGCAA&UUGUUUUGUUUAUAUUUAAAU	3	0.991056422723837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN6669_c0_g1_4470_TPlot.pdf
TRINITY_DN6669_c0_g1:4471	si_a406	TRINITY_DN6669_c0_g1	4460	4480	4471	-19.80	-15.30	0.772727272727273	7.5	2-16,4479-4465	1-1,4480-4480[UP5];17-21,4464-4460[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUAUUGUAUAAACAAAGCAAA&AUUGUUUUGUUUAUAUUUAAA	3	0.995414550046399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6669_c0_g1_4471_TPlot.pdf
TRINITY_DN6669_c0_g1:4472	si_a405	TRINITY_DN6669_c0_g1	4461	4481	4472	-19.80	-15.30	0.772727272727273	8.5	3-17,4479-4465	1-2,4481-4480[UP5];18-21,4464-4461[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAUUGUAUAAACAAAGCAAAA&AAUUGUUUUGUUUAUAUUUAA	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6669_c0_g1_4472_TPlot.pdf
TRINITY_DN6669_c0_g1:4473	si_a404	TRINITY_DN6669_c0_g1	4462	4482	4473	-21.70	-15.30	0.705069124423963	9.5	4-18,4479-4465	1-3,4482-4480[UP5];19-21,4464-4462[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUUGUAUAAACAAAGCAAAAC&GAAUUGUUUUGUUUAUAUUUA	2	0.999801676684109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6669_c0_g1_4473_TPlot.pdf
TRINITY_DN6669_c0_g1:4474	si_a403	TRINITY_DN6669_c0_g1	4463	4483	4474	-22.00	-15.30	0.695454545454545	10.5	5-19,4479-4465	1-4,4483-4480[UP5];20-21,4464-4463[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUGUAUAAACAAAGCAAAACC&AGAAUUGUUUUGUUUAUAUUU	3	0.999999884316333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6669_c0_g1_4474_TPlot.pdf
TRINITY_DN6669_c0_g1:4475	si_a402	TRINITY_DN6669_c0_g1	4464	4484	4475	-22.40	-15.30	0.683035714285714	11.5	6-20,4479-4465	1-5,4484-4480[UP5];21-21,4464-4464[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGUAUAAACAAAGCAAAACCU&UAGAAUUGUUUUGUUUAUAUU	2	0.999935301034478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN6669_c0_g1_4475_TPlot.pdf
TRINITY_DN6669_c0_g1:4476	si_a401	TRINITY_DN6669_c0_g1	4465	4485	4476	-22.60	-15.30	0.676991150442478	12.5	7-21,4479-4465	1-6,4485-4480[UP5]	(((((((((((((((......&......)))))))))))))))	GUAUAAACAAAGCAAAACCUU&AUAGAAUUGUUUUGUUUAUAU	2	0.999958148401029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN6669_c0_g1_4476_TPlot.pdf
TRINITY_DN6669_c0_g1:4592	si_s99	TRINITY_DN6669_c0_g1	4577	4601	4592	-34.60	-23.30	0.673410404624277	8	1-3,4601-4599;5-13,4597-4589;14-21,4584-4577	4-4,4598-4598[SIL];x-x,4588-4585[BULt]	((((((((....(((((((((.(((&))).)))))))))----))))))))	UUUUCCAAAUUUUCCGAGGUGCAGA&UCUUCGCUUCGGA----UUGGAAAA	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN6669_c0_g1_4592_TPlot.pdf
TRINITY_DN6669_c10_g2:354	si_a403	TRINITY_DN6669_c10_g2	343	363	354	-22.00	-15.40	0.7	9	5-21,359-343	1-4,363-360[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAAUAUAGAUAAAACAAAUGG&AGAAUUGUUUUGUUUAUAUUU	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6669_c10_g2_354_TPlot.pdf
TRINITY_DN666_c0_g1:1102	si_a784	TRINITY_DN666_c0_g1	1087	1111	1102	-24.70	-16.70	0.676113360323887	10.5	1-13,1111-1099;14-17,1094-1091	x-x,1098-1095[BULt];18-21,1090-1087[UP3]	....((((....(((((((((((((&)))))))))))))----))))....	UUGUUAGAAAACGAGAUAGGAGAGU&ACUCUUCUAUUUU----UCUAUUUU	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN666_c0_g1_1102_TPlot.pdf
TRINITY_DN666_c0_g1:1104	si_a782	TRINITY_DN666_c0_g1	1089	1113	1104	-26.40	-17.70	0.670454545454545	9	2-15,1112-1099;16-19,1094-1091	1-1,1113-1113[UP5];x-x,1098-1095[BULt];20-21,1090-1089[UP3]	..((((....((((((((((((((.&.))))))))))))))----))))..	GUUAGAAAACGAGAUAGGAGAGUUC&CAACUCUUCUAUUUU----UCUAUU	3	0.999999933027961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN666_c0_g1_1104_TPlot.pdf
TRINITY_DN666_c0_g1:1323	si_s99	TRINITY_DN666_c0_g1	1311	1336	1323	-34.60	-22.60	0.653179190751445	12	1-6,1336-1331;7-13,1326-1320;14-18,1318-1314	x-x,1330-1327[BULt];x-x,1319-1319[BULt];19-21,1313-1311[UP3]	...(((((.(((((((....((((((&))))))----)))))))-)))))...	UUAUCCAAUUCCGAAGAGGACGAAGA&UCUUCG----CUUCGGA-UUGGAAAA	2	0.995815238167408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN666_c0_g1_1323_TPlot.pdf
TRINITY_DN666_c0_g1:1679	si_s897	TRINITY_DN666_c0_g1	1668	1688	1679	-31.30	-20.90	0.667731629392971	8	3-14,1686-1675;17-19,1672-1670	1-2,1688-1687[UP5];15-16,1674-1673[SIL];20-21,1669-1668[UP3]	..(((..((((((((((((..&..))))))))))))..)))..	CAGAACCUGAAGAGGAAGCAC&AGGCUUUCUCUUCAAUUUCAA	2	0.99958150391399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN666_c0_g1_1679_TPlot.pdf
TRINITY_DN666_c0_g1:1680	si_s896	TRINITY_DN666_c0_g1	1669	1689	1680	-31.60	-20.90	0.661392405063291	9	4-15,1686-1675;18-20,1672-1670	1-3,1689-1687[UP5];16-17,1674-1673[SIL];21-21,1669-1669[UP3]	.(((..((((((((((((...&...))))))))))))..))).	AGAACCUGAAGAGGAAGCACC&UAGGCUUUCUCUUCAAUUUCA	2	0.999320017310017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN666_c0_g1_1680_TPlot.pdf
TRINITY_DN666_c0_g1:1681	si_s895	TRINITY_DN666_c0_g1	1670	1690	1681	-31.10	-20.40	0.655948553054662	10	5-16,1686-1675;19-21,1672-1670	1-4,1690-1687[UP5];17-18,1674-1673[SIL]	(((..((((((((((((....&....))))))))))))..)))	GAACCUGAAGAGGAAGCACCG&AUAGGCUUUCUCUUCAAUUUC	3	0.99999863267643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN666_c0_g1_1681_TPlot.pdf
TRINITY_DN666_c0_g1:1682	si_s894	TRINITY_DN666_c0_g1	1671	1691	1682	-29.10	-19.00	0.652920962199313	14	6-17,1686-1675	1-5,1691-1687[UP5];18-21,1674-1671[UP3]	....((((((((((((.....&.....))))))))))))....	AACCUGAAGAGGAAGCACCGA&AAUAGGCUUUCUCUUCAAUUU	3	0.999999999744053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN666_c0_g1_1682_TPlot.pdf
TRINITY_DN666_c0_g1:1683	si_s893	TRINITY_DN666_c0_g1	1672	1692	1683	-29.10	-19.00	0.652920962199313	15	7-18,1686-1675	1-6,1692-1687[UP5];19-21,1674-1672[UP3]	...((((((((((((......&......))))))))))))...	ACCUGAAGAGGAAGCACCGAU&AAAUAGGCUUUCUCUUCAAUU	3	0.999999999251633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN666_c0_g1_1683_TPlot.pdf
TRINITY_DN666_c0_g1:667	si_a507	TRINITY_DN666_c0_g1	657	678	667	-34.90	-24.80	0.710601719197708	7.5	1-5,678-674;7-15,670-662;17-21,661-657	6-6,673-671[AILt];16-16,x-x[BULq]	(((((-(((((((((...(((((&)))))--.))))))))).)))))	CUUGC-UUCCAAGGACAUGACGA&UCGUC--UUCCUUGGAAUGUAAG	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN666_c0_g1_667_TPlot.pdf
TRINITY_DN66712_c0_g1:171	si_a793	TRINITY_DN66712_c0_g1	160	180	171	-28.50	-23.50	0.824561403508772	9	2-19,179-162	1-1,180-180[UP5];20-21,161-160[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAGGAUUGGGGAGUAGGAGGG&UUUUUCUAUUUUCCAAUCCGA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN66712_c0_g1_171_TPlot.pdf
TRINITY_DN66712_c0_g1:186	si_s887	TRINITY_DN66712_c0_g1	175	195	186	-26.80	-17.50	0.652985074626866	19.5	10-21,186-175	1-9,195-187[UP5]	((((((((((((.........&.........))))))))))))	GGAGGGAGCCUGAGGUGUCUG&AAAAAUAAAUAGGCUUUCUCU	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN66712_c0_g1_186_TPlot.pdf
TRINITY_DN66726_c0_g1:697	si_s72	TRINITY_DN66726_c0_g1	687	706	697	-24.10	-16.60	0.688796680497925	5.5	1-13,706-694;15-20,693-688	14-14,x-x[BULq];21-21,687-687[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	UGGGAAA-AGAAGGAAUAGAA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN66726_c0_g1_697_TPlot.pdf
TRINITY_DN66726_c0_g1:833	si_s320	TRINITY_DN66726_c0_g1	824	842	833	-31.00	-22.40	0.72258064516129	5	1-11,842-832;13-16,831-828;18-20,827-825	12-12,x-x[BULq];17-17,x-x[BULq];21-21,824-824[UP3]	.(((-((((-(((((((((((&))))))))))).)))).))).	AAUG-UUGU-ACAGGAAGGAC&GUCCUUCUUGUUACAAACAUA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN66726_c0_g1_833_TPlot.pdf
TRINITY_DN66726_c0_g1:834	si_s319	TRINITY_DN66726_c0_g1	825	843	834	-31.30	-22.20	0.70926517571885	4	2-12,842-832;14-17,831-828;19-21,827-825	1-1,843-843[UP5];13-13,x-x[BULq];18-18,x-x[BULq]	(((-((((-(((((((((((.&.))))))))))).)))).)))	AUG-UUGU-ACAGGAAGGACG&UGUCCUUCUUGUUACAAACAU	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN66726_c0_g1_834_TPlot.pdf
TRINITY_DN66726_c0_g1:836	si_s317	TRINITY_DN66726_c0_g1	826	846	836	-33.10	-22.30	0.673716012084592	6	1-3,846-844;4-14,842-832;16-19,831-828	x-x,843-843[BULt];15-15,x-x[BULq];20-21,827-826[UP3]	..((((-(((((((((((.(((&)))-))))))))))).))))..	UGUUGU-ACAGGAAGGACGAGA&UCU-GUCCUUCUUGUUACAAAC	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN66726_c0_g1_836_TPlot.pdf
TRINITY_DN66726_c0_g1:837	si_s316	TRINITY_DN66726_c0_g1	827	847	837	-31.50	-23.20	0.736507936507936	5	1-4,847-844;5-15,842-832;17-20,831-828	x-x,843-843[BULt];16-16,x-x[BULq];21-21,827-827[UP3]	.((((-(((((((((((.((((&))))-))))))))))).)))).	GUUGU-ACAGGAAGGACGAGAA&UUCU-GUCCUUCUUGUUACAAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN66726_c0_g1_837_TPlot.pdf
TRINITY_DN66726_c0_g1:838	si_s315	TRINITY_DN66726_c0_g1	828	848	838	-31.60	-23.00	0.727848101265823	4.5	2-5,847-844;6-16,842-832;18-21,831-828	1-1,848-848[UP5];x-x,843-843[BULt];17-17,x-x[BULq]	((((-(((((((((((.((((.&.))))-))))))))))).))))	UUGU-ACAGGAAGGACGAGAAG&AUUCU-GUCCUUCUUGUUACAA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN66726_c0_g1_838_TPlot.pdf
TRINITY_DN66743_c0_g1:248	si_a142	TRINITY_DN66743_c0_g1	237	257	248	-23.50	-16.30	0.693617021276596	10.5	2-4,256-254;7-19,251-239	1-1,257-257[UP5];5-6,253-252[SIL];20-21,238-237[UP3]	..(((((((((((((..(((.&.)))..)))))))))))))..	CGGAAGCGACGGCGAAGAAUC&AAUUAAUCGUUGUUGUUUUAA	3	0.999999886634672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN66743_c0_g1_248_TPlot.pdf
TRINITY_DN66744_c0_g1:332	si_s86	TRINITY_DN66744_c0_g1	322	342	332	-32.90	-21.50	0.653495440729483	9.5	2-9,341-334;11-13,331-329;15-21,328-322	1-1,342-342[UP5];10-10,333-332[AILt];14-14,x-x[BULq]	(((((((-(((..((((((((.&.))))))))-.))).)))))))	GGCGGAG-GGACUGGAAGGAGG&UUUCCUUUC-UUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN66744_c0_g1_332_TPlot.pdf
TRINITY_DN6674_c0_g1:110	si_s71	TRINITY_DN6674_c0_g1	97	120	110	-25.70	-17.50	0.680933852140078	11.5	1-7,120-114;8-11,112-109;12-20,106-98	x-x,113-113[BULt];x-x,108-107[BULt];21-21,97-97[UP3]	.(((((((((..((((.(((((((&)))))))-))))--))))))))).	CGGAAAGGAAUUAGAGCAUGGAGG&CUUCUAU-UUUU--UUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6674_c0_g1_110_TPlot.pdf
TRINITY_DN6674_c0_g1:846	si_a113	TRINITY_DN6674_c0_g1	835	855	846	-26.20	-17.40	0.66412213740458	13.5	5-15,851-841	1-4,855-852[UP5];16-21,840-835[UP3]	......(((((((((((....&....)))))))))))......	AUCUAUGCAAGCUCGUACUCG&AAAAUACGAGCUUGUUUUAUA	3	0.99999520307726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN6674_c0_g1_846_TPlot.pdf
TRINITY_DN6675_c0_g2:1415	si_a493	TRINITY_DN6675_c0_g2	1403	1424	1415	-29.50	-19.70	0.667796610169492	7	1-6,1424-1419;8-16,1417-1409;19-21,1405-1403	7-7,1418-1418[SIL];17-18,1408-1406[AILt]	(((...(((((((((.((((((&)))))).)))))))))-..)))	GAGUUGGAAGAACGAGAUGUUC&GAAUAUGUCGUUUUUC-GUCUU	2	0.999537689506999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN6675_c0_g2_1415_TPlot.pdf
TRINITY_DN6675_c0_g2:1417	si_a491	TRINITY_DN6675_c0_g2	1406	1426	1417	-29.90	-19.60	0.65551839464883	9.5	3-8,1424-1419;10-18,1417-1409	1-2,1426-1425[UP5];9-9,1418-1418[SIL];19-21,1408-1406[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	UUGGAAGAACGAGAUGUUCAU&UAGAAUAUGUCGUUUUUCGUC	2	0.991702220255531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN6675_c0_g2_1417_TPlot.pdf
TRINITY_DN6675_c0_g2:1418	si_a490	TRINITY_DN6675_c0_g2	1407	1427	1418	-28.10	-19.60	0.697508896797153	10.5	4-9,1424-1419;11-19,1417-1409	1-3,1427-1425[UP5];10-10,1418-1418[SIL];20-21,1408-1407[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	UGGAAGAACGAGAUGUUCAUU&AUAGAAUAUGUCGUUUUUCGU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN6675_c0_g2_1418_TPlot.pdf
TRINITY_DN6675_c0_g2:1419	si_a489	TRINITY_DN6675_c0_g2	1408	1428	1419	-27.70	-19.60	0.707581227436823	11.5	5-10,1424-1419;12-20,1417-1409	1-4,1428-1425[UP5];11-11,1418-1418[SIL];21-21,1408-1408[UP3]	.(((((((((.((((((....&....)))))).))))))))).	GGAAGAACGAGAUGUUCAUUU&UAUAGAAUAUGUCGUUUUUCG	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN6675_c0_g2_1419_TPlot.pdf
TRINITY_DN6675_c0_g2:1420	si_a488	TRINITY_DN6675_c0_g2	1409	1429	1420	-26.40	-19.00	0.71969696969697	12.5	6-11,1424-1419;13-21,1417-1409	1-5,1429-1425[UP5];12-12,1418-1418[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GAAGAACGAGAUGUUCAUUUU&AUAUAGAAUAUGUCGUUUUUC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN6675_c0_g2_1420_TPlot.pdf
TRINITY_DN6675_c0_g2:941	si_s893	TRINITY_DN6675_c0_g2	930	950	941	-29.10	-19.70	0.676975945017182	10	4-7,947-944;10-21,941-930	1-3,950-948[UP5];8-9,943-942[SIL]	((((((((((((..((((...&...))))..))))))))))))	AAUUGAAGAGAAUUCCUGAUG&AAAUAGGCUUUCUCUUCAAUU	4	0.999996529447133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN6675_c0_g2_941_TPlot.pdf
TRINITY_DN66770_c0_g1:1425	si_s73	TRINITY_DN66770_c0_g1	1414	1433	1425	-24.00	-15.68	0.653333333333333	12	1-4,1433-1430;11-21,1424-1414	5-10,1429-1425[AILq]	(((((((((((.....-((((&))))......)))))))))))	AAAGGAAAGAAUUUUU-UAGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN66770_c0_g1_1425_TPlot.pdf
TRINITY_DN66780_c0_g1:2178	si_s732	TRINITY_DN66780_c0_g1	2166	2187	2178	-34.40	-23.30	0.677325581395349	11	3-6,2185-2182;9-11,2179-2177;12-21,2175-2166	1-2,2187-2186[UP5];7-8,2181-2180[SIL];x-x,2176-2176[BULt]	((((((((((.(((..((((..&..))))..)))-))))))))))	AUCUGUUCGCUCCGGAUGGAAU&UAUCUAGACGG-GUGAAUAGAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN66780_c0_g1_2178_TPlot.pdf
TRINITY_DN66780_c0_g1:2535	si_s628	TRINITY_DN66780_c0_g1	2525	2544	2535	-35.40	-23.70	0.669491525423729	6.5	1-12,2544-2533;14-17,2532-2529	13-13,x-x[BULq];18-21,2528-2525[UP3]	....((((-((((((((((((&)))))))))))).))))....	GUCGGUCU-CGAAAAGGUCGC&GCGAUCUUUUCGUAGGCGUUU	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN66780_c0_g1_2535_TPlot.pdf
TRINITY_DN66780_c0_g1:2536	si_s627	TRINITY_DN66780_c0_g1	2526	2545	2536	-36.10	-23.90	0.662049861495845	6.5	2-13,2544-2533;15-18,2532-2529	1-1,2545-2545[UP5];14-14,x-x[BULq];19-21,2528-2526[UP3]	...((((-((((((((((((.&.)))))))))))).))))...	UCGGUCU-CGAAAAGGUCGCC&AGCGAUCUUUUCGUAGGCGUU	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN66780_c0_g1_2536_TPlot.pdf
TRINITY_DN66780_c0_g1:2537	si_s626	TRINITY_DN66780_c0_g1	2527	2546	2537	-36.10	-23.90	0.662049861495845	7.5	3-14,2544-2533;16-19,2532-2529	1-2,2546-2545[UP5];15-15,x-x[BULq];20-21,2528-2527[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	CGGUCU-CGAAAAGGUCGCCG&AAGCGAUCUUUUCGUAGGCGU	2	0.989356908938648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN66780_c0_g1_2537_TPlot.pdf
TRINITY_DN66780_c0_g1:499	si_a670	TRINITY_DN66780_c0_g1	488	508	499	-32.30	-24.80	0.767801857585139	6.5	1-13,508-496;16-18,494-492;19-21,490-488	14-15,495-495[AILq];x-x,491-491[BULt]	(((.(((.-(((((((((((((&)))))))))))))..)))-)))	GCGAUGAG-GAGGAGUCAGUGG&CUAUUGAUUCCUUAUUCA-CGC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a670_TRINITY_DN66780_c0_g1_499_TPlot.pdf
TRINITY_DN66784_c0_g1:293	si_s70	TRINITY_DN66784_c0_g1	282	302	293	-25.80	-20.50	0.794573643410853	4	1-12,302-291;15-20,288-283	13-14,290-289[SIL];21-21,282-282[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	AGAAAGAUUAAAAAUGGAAGU&ACUUCUAUUUUUUUUCUUUCC	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN66784_c0_g1_293_TPlot.pdf
TRINITY_DN66788_c0_g1:2135	si_a318	TRINITY_DN66788_c0_g1	2124	2144	2135	-22.50	-15.50	0.688888888888889	9.5	4-13,2141-2132;15-19,2130-2126	1-3,2144-2142[UP5];14-14,2131-2131[SIL];20-21,2125-2124[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	AGAAAAAUGUCAUGGAUGUAC&AUUUAUCCAUGAUUUUUUUAU	1	0.209672651340519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN66788_c0_g1_2135_TPlot.pdf
TRINITY_DN66789_c0_g1:577	si_s899	TRINITY_DN66789_c0_g1	566	585	577	-28.30	-18.90	0.667844522968198	8	1-7,585-579;9-17,578-570	8-8,x-x[BULq];18-21,569-566[UP3]	....(((((((((-(((((((&))))))).)))))))))....	AUGCGAAAUUGGA-AGAGAGC&GCUUUCUCUUCAAUUUCAAUU	3	0.99999997930005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN66789_c0_g1_577_TPlot.pdf
TRINITY_DN66796_c0_g1:74	si_s87	TRINITY_DN66796_c0_g1	62	84	74	-32.90	-23.00	0.699088145896657	6.5	1-3,84-82;4-18,80-66;19-20,64-63	x-x,81-81[BULt];x-x,65-65[BULt];21-21,62-62[UP3]	.((.(((((((((((((((.(((&)))-)))))))))))))))-)).	CAGAUGAAGAGGAAGAAGGAGAA&UUC-CUUUCUUCUUCUUCG-CUU	4	0.999999999992508	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN66796_c0_g1_74_TPlot.pdf
TRINITY_DN6679_c0_g1:593	si_a362	TRINITY_DN6679_c0_g1	582	602	593	-28.00	-19.30	0.689285714285714	8.5	2-4,601-599;6-17,597-586	1-1,602-602[UP5];5-5,598-598[SIL];18-21,585-582[UP3]	....((((((((((((.(((.&.))).))))))))))))....	AUUAUGGUCCGAUCGAUAUAA&CUAUUUUGAUCGGAUCAAAAA	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN6679_c0_g1_593_TPlot.pdf
TRINITY_DN6679_c0_g1:597	si_a358	TRINITY_DN6679_c0_g1	586	606	597	-29.10	-19.10	0.656357388316151	12.5	6-8,601-599;10-21,597-586	1-5,606-602[UP5];9-9,598-598[SIL]	((((((((((((.(((.....&.....))).))))))))))))	UGGUCCGAUCGAUAUAAUUUA&AAUUCUAUUUUGAUCGGAUCA	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN6679_c0_g1_597_TPlot.pdf
TRINITY_DN667_c0_g1:628	si_s82	TRINITY_DN667_c0_g1	617	638	628	-28.90	-21.00	0.726643598615917	7.5	1-8,638-631;9-9,629-629;11-20,627-618	x-x,630-630[BULt];10-10,628-628[SIL];21-21,617-617[UP3]	.((((((((((.(.((((((((&))))))))-).)))))))))).	UGGAAGAAGAACGUGAAGGAGA&UUUCUUUC-CUUUCUUCUUCUU	3	0.999999999999386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN667_c0_g1_628_TPlot.pdf
TRINITY_DN667_c0_g1:629	si_s81	TRINITY_DN667_c0_g1	618	639	629	-28.90	-21.90	0.757785467128028	6.5	1-9,639-631;10-10,629-629;12-21,627-618	x-x,630-630[BULt];11-11,628-628[SIL]	((((((((((.(.(((((((((&)))))))))-).))))))))))	GGAAGAAGAACGUGAAGGAGAA&UUUUCUUUC-CUUUCUUCUUCU	2	0.999958666064121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN667_c0_g1_629_TPlot.pdf
TRINITY_DN667_c0_g1:631	si_s80	TRINITY_DN667_c0_g1	619	640	631	-28.20	-21.70	0.769503546099291	6	1-10,640-631;11-11,629-629;13-21,627-619	x-x,630-630[BULt];12-12,628-628[SIL]	(((((((((.(.((((((((((&))))))))))-).)))))))))	GAAGAAGAACGUGAAGGAGAAA&UUUUUCUUUC-CUUUCUUCUUC	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN667_c0_g1_631_TPlot.pdf
TRINITY_DN667_c0_g1:633	si_s78	TRINITY_DN667_c0_g1	621	642	633	-26.20	-19.40	0.740458015267176	5	1-12,642-631;13-13,629-629;15-21,627-621	x-x,630-630[BULt];14-14,628-628[SIL]	(((((((.(.((((((((((((&))))))))))))-).)))))))	AGAAGAACGUGAAGGAGAAAAA&UUUUUUUCUUUC-CUUUCUUCU	2	0.999999989485554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN667_c0_g1_633_TPlot.pdf
TRINITY_DN667_c0_g1:634	si_s77	TRINITY_DN667_c0_g1	622	643	634	-25.50	-19.00	0.745098039215686	4	1-13,643-631;14-14,629-629;16-21,627-622	x-x,630-630[BULt];15-15,628-628[SIL]	((((((.(.(((((((((((((&)))))))))))))-).))))))	GAAGAACGUGAAGGAGAAAAAA&UUUUUUUUCUUUC-CUUUCUUC	2	0.999999992004052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN667_c0_g1_634_TPlot.pdf
TRINITY_DN667_c0_g1:635	si_s76	TRINITY_DN667_c0_g1	623	644	635	-23.60	-15.80	0.669491525423729	5	2-14,643-631;15-15,629-629;17-21,627-623	1-1,644-644[UP5];x-x,630-630[BULt];16-16,628-628[SIL]	(((((.(.(((((((((((((.&.)))))))))))))-).)))))	AAGAACGUGAAGGAGAAAAAAA&AUUUUUUUUCUUUC-CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN667_c0_g1_635_TPlot.pdf
TRINITY_DN667_c0_g1:640	si_s71	TRINITY_DN667_c0_g1	628	648	640	-25.70	-16.90	0.657587548638132	5	1-5,648-644;7-19,643-631;20-20,629-629	6-6,x-x[BULq];x-x,630-630[BULt];21-21,628-628[UP3]	.(.(((((((((((((-(((((&))))).)))))))))))))-).	CGUGAAGGAGAAAAAA-AGAAG&CUUCUAUUUUUUUUCUUUC-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN667_c0_g1_640_TPlot.pdf
TRINITY_DN667_c0_g1:641	si_s70	TRINITY_DN667_c0_g1	630	649	641	-25.80	-18.60	0.72093023255814	4	1-6,649-644;8-20,643-631	7-7,x-x[BULq];21-21,630-630[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	UGAAGGAGAAAAAA-AGAAGU&ACUUCUAUUUUUUUUCUUUCC	2	0.999956556186919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN667_c0_g1_641_TPlot.pdf
TRINITY_DN667_c0_g1:642	si_s69	TRINITY_DN667_c0_g1	631	650	642	-23.40	-18.90	0.807692307692308	4	2-7,649-644;9-21,643-631	1-1,650-650[UP5];8-8,x-x[BULq]	(((((((((((((-((((((.&.)))))).)))))))))))))	GAAGGAGAAAAAA-AGAAGUG&AACUUCUAUUUUUUUUCUUUC	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN667_c0_g1_642_TPlot.pdf
TRINITY_DN667_c0_g1:643	si_s67	TRINITY_DN667_c0_g1	632	652	643	-25.60	-18.40	0.71875	5	1-2,652-651;4-9,649-644;11-21,642-632	3-3,650-650[SIL];10-10,643-643[SIL]	(((((((((((.((((((.((&)).)))))).)))))))))))	AAGGAGAAAAAAAGAAGUGGC&GCAACUUCUAUUUUUUUUCUU	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN667_c0_g1_643_TPlot.pdf
TRINITY_DN667_c0_g1:644	si_s66	TRINITY_DN667_c0_g1	633	653	644	-26.30	-18.60	0.707224334600761	5	1-3,653-651;5-10,649-644;12-21,642-633	4-4,650-650[SIL];11-11,643-643[SIL]	((((((((((.((((((.(((&))).)))))).))))))))))	AGGAGAAAAAAAGAAGUGGCU&AGCAACUUCUAUUUUUUUUCU	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN667_c0_g1_644_TPlot.pdf
TRINITY_DN667_c0_g1:645	si_s65	TRINITY_DN667_c0_g1	634	654	645	-26.00	-17.30	0.665384615384615	6	2-4,653-651;6-11,649-644;13-21,642-634	1-1,654-654[UP5];5-5,650-650[SIL];12-12,643-643[SIL]	(((((((((.((((((.(((.&.))).)))))).)))))))))	GGAGAAAAAAAGAAGUGGCUU&UAGCAACUUCUAUUUUUUUUC	2	0.999849180564006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN667_c0_g1_645_TPlot.pdf
TRINITY_DN667_c0_g1:762	si_a21	TRINITY_DN667_c0_g1	749	771	762	-24.30	-17.58	0.723456790123457	10.5	1-12,771-760;15-21,755-749	13-14,759-756[AILt]	(((((((....((((((((((((&))))))))))))--..)))))))	UUGGAACAUGUGGAAUAAGUGGG&CCUAUUUAUUUU--UAGUUCUAA	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN667_c0_g1_762_TPlot.pdf
TRINITY_DN66815_c0_g1:66	si_s485	TRINITY_DN66815_c0_g1	55	75	66	-18.10	-14.80	0.81767955801105	4	1-5,75-71;7-20,69-56	6-6,70-70[SIL];21-21,55-55[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	AUUAUAUUUAAAUAACUAUGG&CUAUAUUUAUUUAAAUAUAAA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN66815_c0_g1_66_TPlot.pdf
TRINITY_DN66816_c0_g1:214	si_s13	TRINITY_DN66816_c0_g1	203	223	214	-22.90	-15.70	0.685589519650655	7.5	1-17,223-207	18-21,206-203[UP3]	....(((((((((((((((((&)))))))))))))))))....	GUAAUAAUAUAGUAGUAGUGA&UUAUUAUUACUAUAUUGAUUG	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN66816_c0_g1_214_TPlot.pdf
TRINITY_DN6682_c0_g1:1056	si_s76	TRINITY_DN6682_c0_g1	1044	1065	1056	-23.60	-15.80	0.669491525423729	10.5	4-14,1062-1052;15-19,1050-1046	1-3,1065-1063[UP5];x-x,1051-1051[BULt];20-21,1045-1044[UP3]	..(((((.(((((((((((...&...)))))))))))-)))))..	CUGAAGGAGAAGGAAGAAACAU&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6682_c0_g1_1056_TPlot.pdf
TRINITY_DN6682_c0_g1:2450	si_a501	TRINITY_DN6682_c0_g1	2438	2459	2450	-33.50	-23.40	0.698507462686567	7	2-12,2458-2448;14-17,2446-2443;18-19,2441-2440	1-1,2459-2459[UP5];13-13,2447-2447[SIL];x-x,2442-2442[BULt];20-21,2439-2438[UP3]	..((.((((.(((((((((((.&.))))))))))).))))-))..	CCCCAAAGGUGGACGAAGAACU&CGUUUUUCGUCUUCCUU-GGAA	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN6682_c0_g1_2450_TPlot.pdf
TRINITY_DN6682_c0_g1:406	si_a482	TRINITY_DN6682_c0_g1	395	415	406	-26.70	-17.90	0.670411985018727	7.5	1-15,415-401;17-20,399-396	16-16,400-400[SIL];21-21,395-395[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	AGACGAAUUUUGUAUGGCGAU&AUUGUUAUAUAGAAUAUGUCG	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a482_TRINITY_DN6682_c0_g1_406_TPlot.pdf
TRINITY_DN6682_c0_g1:407	si_a481	TRINITY_DN6682_c0_g1	396	416	407	-25.60	-17.50	0.68359375	7	2-16,415-401;18-21,399-396	1-1,416-416[UP5];17-17,400-400[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GACGAAUUUUGUAUGGCGAUU&UAUUGUUAUAUAGAAUAUGUC	3	0.873165707526217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a481_TRINITY_DN6682_c0_g1_407_TPlot.pdf
TRINITY_DN6682_c0_g1:500	si_s254	TRINITY_DN6682_c0_g1	488	509	500	-29.40	-19.80	0.673469387755102	6.5	1-13,509-497;16-17,494-493;18-20,491-489	14-15,496-495[SIL];x-x,492-492[BULt];21-21,488-488[UP3]	.(((.((..(((((((((((((&)))))))))))))..))-))).	CUUGAAGGAGUAUGUUGGGAAA&UUUCCCGAUAUAUUACU-CAAA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN6682_c0_g1_500_TPlot.pdf
TRINITY_DN6682_c0_g1:558	si_a409	TRINITY_DN6682_c0_g1	547	567	558	-19.50	-14.20	0.728205128205128	9.5	1-14,567-554	15-21,553-547[UP3]	.......((((((((((((((&)))))))))))))).......	UGAUGUUGAUAUAGACGAAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6682_c0_g1_558_TPlot.pdf
TRINITY_DN6682_c0_g1:559	si_a408	TRINITY_DN6682_c0_g1	548	568	559	-20.10	-15.00	0.746268656716418	8.5	1-15,568-554	16-21,553-548[UP3]	......(((((((((((((((&)))))))))))))))......	GAUGUUGAUAUAGACGAAACA&UGUUUUGUUUAUAUUUAAAUA	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN6682_c0_g1_559_TPlot.pdf
TRINITY_DN6682_c0_g1:560	si_a407	TRINITY_DN6682_c0_g1	549	569	560	-19.80	-15.10	0.762626262626263	8.5	2-16,568-554	1-1,569-569[UP5];17-21,553-549[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUGUUGAUAUAGACGAAACAC&UUGUUUUGUUUAUAUUUAAAU	3	0.997062604531715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN6682_c0_g1_560_TPlot.pdf
TRINITY_DN6682_c0_g1:563	si_a404	TRINITY_DN6682_c0_g1	552	574	563	-21.70	-16.90	0.778801843317972	8	1-4,574-571;5-19,568-554	x-x,570-569[BULt];20-21,553-552[UP3]	..(((((((((((((((..((((&))))--)))))))))))))))..	UUGAUAUAGACGAAACACGAUUC&GAAU--UGUUUUGUUUAUAUUUA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6682_c0_g1_563_TPlot.pdf
TRINITY_DN6682_c0_g1:564	si_a403	TRINITY_DN6682_c0_g1	553	575	564	-22.00	-16.90	0.768181818181818	8	2-5,574-571;6-20,568-554	1-1,575-575[UP5];x-x,570-569[BULt];21-21,553-553[UP3]	.(((((((((((((((..((((.&.))))--))))))))))))))).	UGAUAUAGACGAAACACGAUUCG&AGAAU--UGUUUUGUUUAUAUUU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6682_c0_g1_564_TPlot.pdf
TRINITY_DN6682_c0_g1:566	si_a401	TRINITY_DN6682_c0_g1	555	577	566	-22.60	-15.80	0.699115044247788	10	4-7,574-571;8-21,568-555	1-3,577-575[UP5];x-x,570-569[BULt]	((((((((((((((..((((...&...))))--))))))))))))))	AUAUAGACGAAACACGAUUCGAA&AUAGAAU--UGUUUUGUUUAUAU	4	0.999974296613986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN6682_c0_g1_566_TPlot.pdf
TRINITY_DN66848_c0_g1:1254	si_s587	TRINITY_DN66848_c0_g1	1243	1263	1254	-28.70	-18.90	0.658536585365854	13	6-19,1258-1245	1-5,1263-1259[UP5];20-21,1244-1243[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAUGGAUUUGUUCAUGGAAGU&AAAAUCAUGGAUAAAUCCAAG	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s587_TRINITY_DN66848_c0_g1_1254_TPlot.pdf
TRINITY_DN66848_c0_g1:1680	si_a67	TRINITY_DN66848_c0_g1	1668	1689	1680	-27.20	-19.30	0.709558823529412	8	1-12,1689-1678;14-20,1675-1669	13-13,1677-1676[AILt];21-21,1668-1668[UP3]	.(((((((..((((((((((((&))))))))))))-.))))))).	AGAAGGCGUCUUUGGAGGAAGC&GCUUCUUUCAAA-UUGUUUUUC	2	0.995260596514365	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN66848_c0_g1_1680_TPlot.pdf
TRINITY_DN66848_c0_g1:841	si_s766	TRINITY_DN66848_c0_g1	832	850	841	-28.20	-19.08	0.676595744680851	9	2-10,849-841;15-21,838-832	1-1,850-850[UP5];11-14,840-839[AILq]	(((((((..--(((((((((.&.)))))))))....)))))))	GCAGUGGGC--UGAUCGUUGG&ACAACGAUUAAUUACUAUUGC	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s766_TRINITY_DN66848_c0_g1_841_TPlot.pdf
TRINITY_DN6685_c0_g1:1267	si_s570	TRINITY_DN6685_c0_g1	1256	1276	1267	-30.50	-20.60	0.675409836065574	10	1-12,1276-1265	13-21,1264-1256[UP3]	.........((((((((((((&)))))))))))).........	UUGCUGCCAUCUUUGUCCCGA&UCGGGACAAGGAAUAAAAAAA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s570_TRINITY_DN6685_c0_g1_1267_TPlot.pdf
TRINITY_DN6685_c0_g1:1270	si_s567	TRINITY_DN6685_c0_g1	1259	1279	1270	-30.60	-21.50	0.702614379084967	9.5	3-15,1277-1265	1-2,1279-1278[UP5];16-21,1264-1259[UP3]	......(((((((((((((..&..)))))))))))))......	CUGCCAUCUUUGUCCCGAAUC&UUUUCGGGACAAGGAAUAAAA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN6685_c0_g1_1270_TPlot.pdf
TRINITY_DN6685_c0_g1:1276	si_s561	TRINITY_DN6685_c0_g1	1265	1285	1276	-31.10	-21.66	0.696463022508039	9.5	1-4,1285-1282;9-21,1277-1265	5-8,1281-1278[SIL]	(((((((((((((....((((&))))....)))))))))))))	UCUUUGUCCCGAAUCAUUUGA&UUAAUAUUUUCGGGACAAGGA	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s561_TRINITY_DN6685_c0_g1_1276_TPlot.pdf
TRINITY_DN6685_c0_g1:1279	si_s558	TRINITY_DN6685_c0_g1	1268	1288	1279	-28.20	-19.16	0.679432624113475	10	2-7,1287-1282;12-21,1277-1268	1-1,1288-1288[UP5];8-11,1281-1278[SIL]	((((((((((....((((((.&.))))))....))))))))))	UUGUCCCGAAUCAUUUGAUUA&GAAUUAAUAUUUUCGGGACAA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN6685_c0_g1_1279_TPlot.pdf
TRINITY_DN6686_c0_g1:4140	si_a641	TRINITY_DN6686_c0_g1	4129	4149	4140	-23.60	-16.90	0.716101694915254	8	4-19,4146-4131	1-3,4149-4147[UP5];20-21,4130-4129[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAAUAUAUUACUCAAAGACUA&AUUUUUUUGAGUAAUAUAUCG	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN6686_c0_g1_4140_TPlot.pdf
TRINITY_DN6686_c1_g1:1512	si_a409	TRINITY_DN6686_c1_g1	1500	1521	1512	-19.50	-14.30	0.733333333333333	7.5	1-11,1521-1511;13-19,1508-1502	12-12,1510-1509[AILt];20-21,1501-1500[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	AAGUUUAAAAGAUAAGCAAAAC&GUUUUGUUUAU-AUUUAAAUAA	4	0.999639012009468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6686_c1_g1_1512_TPlot.pdf
TRINITY_DN668_c0_g1:109	si_s60	TRINITY_DN668_c0_g1	98	121	109	-28.20	-19.70	0.698581560283688	13.5	1-6,121-116;7-16,112-103	x-x,115-113[BULt];17-21,102-98[UP3]	.....((((((((((...((((((&))))))---)))))))))).....	GGCUCGGAAGUUGCUCAAGGCUUG&CAAGUU---AGCAACUUCUAUUUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN668_c0_g1_109_TPlot.pdf
TRINITY_DN668_c0_g1:138	si_s76	TRINITY_DN668_c0_g1	126	147	138	-23.60	-16.10	0.682203389830509	11.5	5-15,143-133;16-20,131-127	1-4,147-144[UP5];x-x,132-132[BULt];21-21,126-126[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	CAGAGACGGAAAGGAGAACUCA&AUUUUUUUUCUUUCC-UUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN668_c0_g1_138_TPlot.pdf
TRINITY_DN668_c0_g1:1562	si_a497	TRINITY_DN668_c0_g1	1551	1571	1562	-32.00	-20.80	0.65	10	3-15,1569-1557	1-2,1571-1570[UP5];16-21,1556-1551[UP3]	......(((((((((((((..&..)))))))))))))......	UCGAUCGACGAGAAACGACUC&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN668_c0_g1_1562_TPlot.pdf
TRINITY_DN668_c0_g1:1567	si_a492	TRINITY_DN668_c0_g1	1556	1576	1567	-30.20	-20.80	0.688741721854305	14.5	8-20,1569-1557	1-7,1576-1570[UP5];21-21,1556-1556[UP3]	.(((((((((((((.......&.......))))))))))))).	CGACGAGAAACGACUCGAUAA&AGAAUAUGUCGUUUUUCGUCU	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN668_c0_g1_1567_TPlot.pdf
TRINITY_DN668_c0_g1:1568	si_a491	TRINITY_DN668_c0_g1	1557	1577	1568	-29.90	-20.50	0.68561872909699	15.5	9-21,1569-1557	1-8,1577-1570[UP5]	(((((((((((((........&........)))))))))))))	GACGAGAAACGACUCGAUAAA&UAGAAUAUGUCGUUUUUCGUC	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN668_c0_g1_1568_TPlot.pdf
TRINITY_DN668_c0_g1:425	si_s479	TRINITY_DN668_c0_g1	414	434	425	-26.40	-18.00	0.681818181818182	7.5	1-10,434-425;12-14,423-421;17-20,418-415	11-11,424-424[SIL];15-16,420-419[SIL];21-21,414-414[UP3]	.((((..(((.((((((((((&)))))))))).)))..)))).	CUUGAUCGGAAAUGGGAUCCG&CGGAUCCUAUAUUUAUUUAAA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN668_c0_g1_425_TPlot.pdf
TRINITY_DN668_c0_g1:643	si_s77	TRINITY_DN668_c0_g1	631	658	643	-25.50	-16.60	0.650980392156863	17	1-9,658-650;10-17,643-636;18-21,634-631	x-x,649-644[BULt];x-x,635-635[BULt]	((((.((((((((......(((((((((&)))))))))------))))))))-))))	GAAGCAAAGGAGACGCCAUGAAGAGAGA&UUUUUUUUC------UUUCCUUU-CUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN668_c0_g1_643_TPlot.pdf
TRINITY_DN668_c0_g1:773	si_a310	TRINITY_DN668_c0_g1	762	782	773	-33.70	-22.60	0.670623145400593	8.5	1-12,782-771;14-18,769-765;20-20,763-763	13-13,770-770[SIL];19-19,764-764[SIL];21-21,762-762[UP3]	.(.(((((.((((((((((((&)))))))))))).))))).).	UUGGUGGAGGAGUUCGGGCGA&UCGCUUGGAUUUAUCCAUGAU	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN668_c0_g1_773_TPlot.pdf
TRINITY_DN668_c0_g1:774	si_a309	TRINITY_DN668_c0_g1	763	783	774	-33.60	-22.60	0.672619047619048	8	2-13,782-771;15-19,769-765;21-21,763-763	1-1,783-783[UP5];14-14,770-770[SIL];20-20,764-764[SIL]	(.(((((.((((((((((((.&.)))))))))))).))))).)	UGGUGGAGGAGUUCGGGCGAC&UUCGCUUGGAUUUAUCCAUGA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN668_c0_g1_774_TPlot.pdf
TRINITY_DN668_c0_g1:775	si_a308	TRINITY_DN668_c0_g1	764	784	775	-32.70	-22.00	0.672782874617737	10	3-14,782-771;16-20,769-765	1-2,784-783[UP5];15-15,770-770[SIL];21-21,764-764[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	GGUGGAGGAGUUCGGGCGACC&AUUCGCUUGGAUUUAUCCAUG	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN668_c0_g1_775_TPlot.pdf
TRINITY_DN66906_c0_g1:1785	si_s305	TRINITY_DN66906_c0_g1	1774	1794	1785	-30.30	-20.48	0.675907590759076	11.5	3-7,1792-1788;11-21,1784-1774	1-2,1794-1793[UP5];8-10,1787-1785[SIL]	(((((((((((...(((((..&..)))))...)))))))))))	GAGGGCAGGAUCGCCGCGAAG&AAUUGCGAAAAUUCUGUCCUU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN66906_c0_g1_1785_TPlot.pdf
TRINITY_DN66906_c0_g1:1786	si_s635	TRINITY_DN66906_c0_g1	1773	1794	1786	-39.80	-27.30	0.685929648241206	10	1-6,1794-1789;8-11,1788-1785;12-20,1782-1774	7-7,x-x[BULq];x-x,1784-1783[BULt];21-21,1773-1773[UP3]	.(((((((((..((((-((((((&)))))).))))--))))))))).	AGAGGGCAGGAUCGCC-GCGAAG&UUUCGUAGGCG--UUUGCCCUCG	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN66906_c0_g1_1786_TPlot.pdf
TRINITY_DN66906_c0_g1:1817	si_a760	TRINITY_DN66906_c0_g1	1806	1826	1817	-31.10	-20.70	0.665594855305466	10.5	3-11,1824-1816;13-21,1814-1806	1-2,1826-1825[UP5];12-12,1815-1815[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GUCGGUCAAUGACUCGGAGAC&UCCUUUGGGUUUUUGAUUGAU	2	0.999935301034478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN66906_c0_g1_1817_TPlot.pdf
TRINITY_DN66906_c0_g1:1900	si_a635	TRINITY_DN66906_c0_g1	1886	1909	1900	-26.10	-17.50	0.670498084291188	11.5	3-14,1907-1896;15-18,1892-1889	1-2,1909-1908[UP5];x-x,1895-1893[BULt];19-21,1888-1886[UP3]	...((((...((((((((((((..&..))))))))))))---))))...	GAGACUCUGAGAAGAGAUCGACGA&AUGUCGAUUUUUUU---GAGUAAU	2	0.999996696060179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN66906_c0_g1_1900_TPlot.pdf
TRINITY_DN6690_c0_g1:256	si_a461	TRINITY_DN6690_c0_g1	245	266	256	-21.50	-15.30	0.711627906976744	7.5	1-6,266-261;8-21,258-245	7-7,260-259[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	AAUUACAUGUUAUACAGUGAUA&UGUUAU-AUAUAAUAUGUAAUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN6690_c0_g1_256_TPlot.pdf
TRINITY_DN6690_c0_g1:257	si_a460	TRINITY_DN6690_c0_g1	246	267	257	-21.60	-15.40	0.712962962962963	7.5	1-7,267-261;9-21,258-246	8-8,260-259[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	AUUACAUGUUAUACAGUGAUAA&UUGUUAU-AUAUAAUAUGUAAU	0	0.064842020773113	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN6690_c0_g1_257_TPlot.pdf
TRINITY_DN66946_c0_g1:604	si_s69	TRINITY_DN66946_c0_g1	593	617	604	-23.40	-15.96	0.682051282051282	16	3-8,615-610;11-21,603-593	1-2,617-616[UP5];9-10,609-604[AILt]	(((((((((((......((((((..&..))))))----..)))))))))))	GAAAGAAAAGAUUGAUUUAGAAGGU&AACUUCUA----UUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN66946_c0_g1_604_TPlot.pdf
TRINITY_DN6697_c0_g1:1406	si_a791	TRINITY_DN6697_c0_g1	1397	1415	1406	-26.50	-20.40	0.769811320754717	4	1-16,1415-1400;19-21,1399-1397	17-18,x-x[BULq]	(((--((((((((((((((((&))))))))))))))))..)))	GGA--GGAAAAUGGAAAAGUA&UAUUUUUCUAUUUUCCAAUCC	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN6697_c0_g1_1406_TPlot.pdf
TRINITY_DN6697_c0_g1:1410	si_a787	TRINITY_DN6697_c0_g1	1399	1419	1410	-26.30	-24.10	0.916349809885932	3.5	2-20,1418-1400	1-1,1419-1419[UP5];21-21,1399-1399[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGGAAAAUGGAAAAGUAGAAU&CUUCUAUUUUUCUAUUUUCCA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN6697_c0_g1_1410_TPlot.pdf
TRINITY_DN6697_c0_g1:1411	si_a786	TRINITY_DN6697_c0_g1	1400	1420	1411	-26.60	-23.60	0.887218045112782	4.5	3-21,1418-1400	1-2,1420-1419[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GGAAAAUGGAAAAGUAGAAUU&UCUUCUAUUUUUCUAUUUUCC	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN6697_c0_g1_1411_TPlot.pdf
TRINITY_DN6698_c0_g1:459	si_a789	TRINITY_DN6698_c0_g1	446	468	459	-24.80	-18.40	0.741935483870968	8.5	1-14,468-455;15-18,452-449	x-x,454-453[BULt];19-21,448-446[UP3]	...((((..((((((((((((((&))))))))))))))--))))...	CCAGGAAAAGAUGGAAAAGUGGA&UCUAUUUUUCUAUU--UUCCAAU	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN6698_c0_g1_459_TPlot.pdf
TRINITY_DN6698_c0_g1:463	si_a785	TRINITY_DN6698_c0_g1	452	472	463	-25.90	-17.60	0.67953667953668	7	2-3,471-470;5-20,468-453	1-1,472-472[UP5];4-4,469-469[SIL];21-21,452-452[UP3]	.((((((((((((((((.((.&.)).)))))))))))))))).	AAAGAUGGAAAAGUGGAUGAU&CUCUUCUAUUUUUCUAUUUUC	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6698_c0_g1_463_TPlot.pdf
TRINITY_DN6698_c0_g1:881	si_a326	TRINITY_DN6698_c0_g1	869	890	881	-26.20	-19.70	0.751908396946565	9.5	1-10,890-881;12-21,878-869	11-11,880-879[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	GACAAGGGAUCUGAAGAGUUGU&AUGAUUUUUU-UAUUCCUUGUC	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN6698_c0_g1_881_TPlot.pdf
TRINITY_DN669_c0_g1:3141	si_a302	TRINITY_DN669_c0_g1	3131	3150	3141	-28.20	-19.40	0.687943262411348	11.5	6-13,3145-3138;15-21,3137-3131	1-5,3150-3146[UP5];14-14,x-x[BULq]	(((((((-((((((((.....&.....)))))))).)))))))	UGAGUCC-GGCGAAUCCCUUA&AAAAAGAUUCGCUUGGAUUUA	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN669_c0_g1_3141_TPlot.pdf
TRINITY_DN669_c0_g1:4529	si_a350	TRINITY_DN669_c0_g1	4518	4538	4529	-20.30	-13.68	0.673891625615764	9	3-14,4536-4525;18-21,4521-4518	1-2,4538-4537[UP5];15-17,4524-4522[SIL]	((((...((((((((((((..&..))))))))))))...))))	UCAAUGGAGAGUUGAUGUUCG&AAAAUAUUAAUUCUAUUUUGA	4	0.999920005932043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN669_c0_g1_4529_TPlot.pdf
TRINITY_DN669_c0_g1:4660	si_s701	TRINITY_DN669_c0_g1	4649	4667	4660	-30.50	-20.60	0.675409836065574	8.5	2-7,4666-4661;10-19,4660-4651	1-1,4667-4667[UP5];8-9,x-x[BULq];20-21,4650-4649[UP3]	..((((((((((--((((((.&.))))))..))))))))))..	CGGUUCGCUAAU--GUCGACA&AGUCGAUUUAUUAGUGAACAG	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s701_TRINITY_DN669_c0_g1_4660_TPlot.pdf
TRINITY_DN669_c0_g1:4661	si_s700	TRINITY_DN669_c0_g1	4650	4668	4661	-29.20	-20.60	0.705479452054795	9.5	3-8,4666-4661;11-20,4660-4651	1-2,4668-4667[UP5];9-10,x-x[BULq];21-21,4650-4650[UP3]	.((((((((((--((((((..&..))))))..)))))))))).	GGUUCGCUAAU--GUCGACAU&UAGUCGAUUUAUUAGUGAACA	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN669_c0_g1_4661_TPlot.pdf
TRINITY_DN669_c0_g1:516	si_a284	TRINITY_DN669_c0_g1	505	525	516	-28.30	-19.20	0.678445229681979	11	3-9,523-517;12-19,514-507	1-2,525-524[UP5];10-11,516-515[SIL];20-21,506-505[UP3]	..((((((((..(((((((..&..)))))))..))))))))..	CCUUGGAUCCCCGCGGUCUAU&AAAGAUCGCUUGGAUUUAAAA	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN669_c0_g1_516_TPlot.pdf
TRINITY_DN669_c0_g1:5198	si_a490	TRINITY_DN669_c0_g1	5185	5207	5198	-28.10	-18.50	0.658362989323843	10	4-12,5204-5196;13-15,5194-5192;16-21,5190-5185	1-3,5207-5205[UP5];x-x,5195-5195[BULt];x-x,5191-5191[BULt]	((((((.(((.(((((((((...&...)))))))))-)))-))))))	GCGAGACAACAGACGUAUUCAUC&AUAGAAUAUGUC-GUU-UUUCGU	4	0.999681063974268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN669_c0_g1_5198_TPlot.pdf
TRINITY_DN669_c0_g1:574	si_s777	TRINITY_DN669_c0_g1	563	583	574	-26.60	-17.40	0.654135338345865	9.5	1-14,583-570	15-21,569-563[UP3]	.......((((((((((((((&)))))))))))))).......	UGCAGAAUGUAGCGAUAGUGA&UUACUAUUGCUAUAAAACAAG	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN669_c0_g1_574_TPlot.pdf
TRINITY_DN669_c0_g1:575	si_s776	TRINITY_DN669_c0_g1	564	584	575	-25.10	-17.40	0.693227091633466	9.5	2-15,583-570	1-1,584-584[UP5];16-21,569-564[UP3]	......((((((((((((((.&.))))))))))))))......	GCAGAAUGUAGCGAUAGUGAA&AUUACUAUUGCUAUAAAACAA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN669_c0_g1_575_TPlot.pdf
TRINITY_DN669_c0_g1:576	si_s775	TRINITY_DN669_c0_g1	565	585	576	-25.00	-17.40	0.696	10.5	3-16,583-570	1-2,585-584[UP5];17-21,569-565[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAGAAUGUAGCGAUAGUGAAC&AAUUACUAUUGCUAUAAAACA	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN669_c0_g1_576_TPlot.pdf
TRINITY_DN669_c0_g1:577	si_s774	TRINITY_DN669_c0_g1	566	586	577	-24.70	-17.40	0.704453441295547	11.5	4-17,583-570	1-3,586-584[UP5];18-21,569-566[UP3]	....((((((((((((((...&...))))))))))))))....	AGAAUGUAGCGAUAGUGAACA&UAAUUACUAUUGCUAUAAAAC	2	0.751911233959273	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN669_c0_g1_577_TPlot.pdf
TRINITY_DN669_c0_g1:582	si_s769	TRINITY_DN669_c0_g1	571	590	582	-27.00	-18.80	0.696296296296296	9	2-5,589-586;9-21,583-571	1-1,590-590[UP5];6-8,585-584[AILq]	(((((((((((((..-((((.&.))))...)))))))))))))	GUAGCGAUAGUGAAC-AUCGA&ACGAUUAAUUACUAUUGCUAU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s769_TRINITY_DN669_c0_g1_582_TPlot.pdf
TRINITY_DN669_c0_g1:583	si_s768	TRINITY_DN669_c0_g1	572	591	583	-26.80	-17.50	0.652985074626866	10.5	3-6,589-586;10-21,583-572	1-2,591-590[UP5];7-9,585-584[AILq]	((((((((((((..-((((..&..))))...))))))))))))	UAGCGAUAGUGAAC-AUCGAG&AACGAUUAAUUACUAUUGCUA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN669_c0_g1_583_TPlot.pdf
TRINITY_DN669_c0_g1:7449	si_s522	TRINITY_DN669_c0_g1	7437	7458	7449	-23.80	-17.00	0.714285714285714	9	1-11,7458-7448;12-17,7446-7441	x-x,7447-7447[BULt];18-21,7440-7437[UP3]	....((((((.(((((((((((&)))))))))))-))))))....	GUUUGUGAUUCUCGAGUUGAGG&UCUUAAUUCGA-AAUCAUUUUU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN669_c0_g1_7449_TPlot.pdf
TRINITY_DN669_c0_g1:7477	si_s809	TRINITY_DN669_c0_g1	7466	7486	7477	-28.50	-19.20	0.673684210526316	12	3-16,7484-7471	1-2,7486-7485[UP5];17-21,7470-7466[UP3]	.....((((((((((((((..&..)))))))))))))).....	CAUGCGGGAGGGUGACGAGAG&UCUUCGUUACCUUUUCUUAAU	4	0.999999947454981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN669_c0_g1_7477_TPlot.pdf
TRINITY_DN67021_c0_g1:219	si_s308	TRINITY_DN67021_c0_g1	208	228	219	-32.80	-23.24	0.708536585365854	11	1-5,228-224;11-20,218-209	6-10,223-219[SIL];21-21,208-208[UP3]	.((((((((((.....(((((&))))).....)))))))))).	UAGAAGGACAGUUAGAUCGCA&UGCGAAAAUUCUGUCCUUCUU	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN67021_c0_g1_219_TPlot.pdf
TRINITY_DN6702_c0_g2:577	si_a203	TRINITY_DN6702_c0_g2	566	586	577	-26.90	-19.80	0.736059479553903	2.5	1-3,586-584;5-21,582-566	4-4,583-583[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	AAUUAGUUGAUUUAUUACUGA&UCACUAAUAAAUCGACUAAUU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN6702_c0_g2_577_TPlot.pdf
TRINITY_DN67033_c0_g1:464	si_s100	TRINITY_DN67033_c0_g1	453	472	464	-33.70	-23.00	0.682492581602374	7	1-7,472-466;10-21,464-453	8-9,465-465[AILq]	((((((((((((.-(((((((&)))))))..))))))))))))	GUUUUCCAGUUUU-AGCGAAG&CUUCGCUUCGGAUUGGAAAAU	1	0.0511289029445996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN67033_c0_g1_464_TPlot.pdf
TRINITY_DN67041_c0_g1:46	si_s78	TRINITY_DN67041_c0_g1	35	55	46	-26.20	-17.40	0.66412213740458	9.5	2-10,54-46;12-19,44-37	1-1,55-55[UP5];11-11,45-45[SIL];20-21,36-35[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	AUGAGAAAGGCGGGAAAGGAG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN67041_c0_g1_46_TPlot.pdf
TRINITY_DN6705_c0_g1:2937	si_a434	TRINITY_DN6705_c0_g1	2916	2946	2937	-36.40	-24.10	0.662087912087912	15.5	2-2,2945-2945;4-15,2943-2932;16-21,2921-2916	1-1,2946-2946[UP5];3-3,2944-2944[SIL];x-x,2931-2922[BULt]	((((((..........((((((((((((.(.&.).))))))))))))----------))))))	GUCUCAGAUGGCGGGGUAUCCAGCGGGUGCG&AGGAUCCGUUGGAUA----------UGAGAU	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN6705_c0_g1_2937_TPlot.pdf
TRINITY_DN6705_c0_g1:3036	si_s543	TRINITY_DN6705_c0_g1	3026	3045	3036	-28.80	-19.20	0.666666666666667	8.5	1-10,3045-3036;16-20,3031-3027	11-15,3035-3032[AILq];21-21,3026-3026[UP3]	.(((((....-((((((((((&)))))))))).....))))).	CGAUUCCCGC-UGAUCGGAUC&GAUCCGAUCAAAAUAGAAUUA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN6705_c0_g1_3036_TPlot.pdf
TRINITY_DN6705_c0_g1:3080	si_a425	TRINITY_DN6705_c0_g1	3078	3089	3080	-30.80	-20.50	0.665584415584416	2	11-21,3088-3078	10-10,3089-3089[SIL]	(((((((((((.&.)))))))))))	CCGACGGGUCCC&AAUAAAUAUAGG	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN6705_c0_g1_3080_TPlot.pdf
TRINITY_DN67068_c0_g1:128	si_s773	TRINITY_DN67068_c0_g1	117	137	128	-23.10	-15.70	0.67965367965368	12.5	5-17,133-121	1-4,137-134[UP5];18-21,120-117[UP3]	....(((((((((((((....&....)))))))))))))....	ACGAAUGGCAAUGGUAACGUA&UUAAUUACUAUUGCUAUAAAA	0	0.204381710067456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN67068_c0_g1_128_TPlot.pdf
TRINITY_DN6706_c0_g1:2432	si_a411	TRINITY_DN6706_c0_g1	2421	2441	2432	-17.90	-11.70	0.653631284916201	10.5	1-13,2441-2429	14-21,2428-2421[UP3]	........(((((((((((((&)))))))))))))........	UUUUCAUAGAAUGUGAACAAA&UUUGUUUAUAUUUAAAUAAAU	3	0.999999999999573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN6706_c0_g1_2432_TPlot.pdf
TRINITY_DN6706_c0_g1:2433	si_a410	TRINITY_DN6706_c0_g1	2422	2442	2433	-17.80	-12.40	0.696629213483146	9.5	1-14,2442-2429	15-21,2428-2422[UP3]	.......((((((((((((((&)))))))))))))).......	UUUCAUAGAAUGUGAACAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999895452642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN6706_c0_g1_2433_TPlot.pdf
TRINITY_DN6706_c0_g1:2435	si_a408	TRINITY_DN6706_c0_g1	2424	2444	2435	-20.10	-16.90	0.840796019900497	7.5	1-16,2444-2429	17-21,2428-2424[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCAUAGAAUGUGAACAAAACA&UGUUUUGUUUAUAUUUAAAUA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN6706_c0_g1_2435_TPlot.pdf
TRINITY_DN6706_c0_g1:2439	si_a404	TRINITY_DN6706_c0_g1	2428	2448	2439	-21.70	-18.00	0.829493087557604	6.5	1-1,2448-2448;4-20,2445-2429	2-3,2447-2446[SIL];21-21,2428-2428[UP3]	.(((((((((((((((((..(&)..))))))))))))))))).	AGAAUGUGAACAAAACAAGAC&GAAUUGUUUUGUUUAUAUUUA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN6706_c0_g1_2439_TPlot.pdf
TRINITY_DN6706_c0_g1:2440	si_a403	TRINITY_DN6706_c0_g1	2429	2449	2440	-22.00	-17.50	0.795454545454545	6.5	2-2,2448-2448;5-21,2445-2429	1-1,2449-2449[UP5];3-4,2447-2446[SIL]	(((((((((((((((((..(.&.)..)))))))))))))))))	GAAUGUGAACAAAACAAGACG&AGAAUUGUUUUGUUUAUAUUU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN6706_c0_g1_2440_TPlot.pdf
TRINITY_DN670_c0_g1:1137	si_a455	TRINITY_DN670_c0_g1	1126	1146	1137	-21.10	-14.00	0.663507109004739	9	4-12,1143-1135;14-20,1133-1127	1-3,1146-1144[UP5];13-13,1134-1134[SIL];21-21,1126-1126[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	UUAUUGUGGAUAGCAACACCU&AAUUGUUGUUAUAUAUAAUAU	3	0.999999978003951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN670_c0_g1_1137_TPlot.pdf
TRINITY_DN670_c0_g1:1138	si_a454	TRINITY_DN670_c0_g1	1127	1147	1138	-21.30	-13.90	0.652582159624413	10	5-13,1143-1135;15-21,1133-1127	1-4,1147-1144[UP5];14-14,1134-1134[SIL]	(((((((.(((((((((....&....))))))))).)))))))	UAUUGUGGAUAGCAACACCUG&UAAUUGUUGUUAUAUAUAAUA	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN670_c0_g1_1138_TPlot.pdf
TRINITY_DN670_c0_g1:573	si_s447	TRINITY_DN670_c0_g1	562	583	573	-21.10	-13.90	0.658767772511848	6	2-7,582-577;8-15,575-568;17-21,566-562	1-1,583-583[UP5];x-x,576-576[BULt];16-16,567-567[SIL]	(((((.((((((((.((((((.&.))))))-)))))))).)))))	GUGAUAGUUGUUAUAGUAUAAA&AUUAUAU-AUAACAACAAUUAU	4	0.989558440659522	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s447_TRINITY_DN670_c0_g1_573_TPlot.pdf
TRINITY_DN670_c0_g1:802	si_s312	TRINITY_DN670_c0_g1	790	811	802	-29.00	-19.80	0.682758620689655	10	4-15,808-797;16-18,795-793	1-3,811-809[UP5];x-x,796-796[BULt];19-21,792-790[UP3]	...(((.((((((((((((...&...))))))))))))-)))...	UGUCAACGAAGGACAGGAUAAU&AAAAUUCUGUCCUUC-UUGUUA	3	0.999999877072956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN670_c0_g1_802_TPlot.pdf
TRINITY_DN670_c0_g1:809	si_a399	TRINITY_DN670_c0_g1	798	818	809	-22.60	-15.30	0.676991150442478	8	1-6,818-813;8-19,811-800	7-7,812-812[SIL];20-21,799-798[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AAGGACAGGAUAAUACUAUGU&AUAUAGAAUUGUUUUGUUUAU	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN670_c0_g1_809_TPlot.pdf
TRINITY_DN670_c0_g1:810	si_a398	TRINITY_DN670_c0_g1	799	819	810	-22.40	-15.60	0.696428571428572	8	2-7,818-813;9-20,811-800	1-1,819-819[UP5];8-8,812-812[SIL];21-21,799-799[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AGGACAGGAUAAUACUAUGUG&AAUAUAGAAUUGUUUUGUUUA	3	0.999974771577817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN670_c0_g1_810_TPlot.pdf
TRINITY_DN67139_c0_g1:1000	si_a71	TRINITY_DN67139_c0_g1	989	1009	1000	-23.30	-17.30	0.742489270386266	7.5	3-17,1007-993	1-2,1009-1008[UP5];18-21,992-989[UP3]	....(((((((((((((((..&..)))))))))))))))....	ACAAGAGAAACAAUUUGAAUU&CUUUCAAAUUGUUUUUCAUUA	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN67139_c0_g1_1000_TPlot.pdf
TRINITY_DN67139_c0_g1:1003	si_a68	TRINITY_DN67139_c0_g1	992	1014	1003	-25.40	-21.20	0.834645669291339	5.5	1-5,1014-1010;6-20,1007-993	x-x,1009-1008[BULt];21-21,992-992[UP3]	.(((((((((((((((..(((((&)))))--))))))))))))))).	AGAGAAACAAUUUGAAUUAGAAG&CUUCU--UUCAAAUUGUUUUUCA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN67139_c0_g1_1003_TPlot.pdf
TRINITY_DN67139_c0_g1:1004	si_a67	TRINITY_DN67139_c0_g1	993	1015	1004	-27.20	-25.00	0.919117647058824	4.5	1-6,1015-1010;7-21,1007-993	x-x,1009-1008[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	GAGAAACAAUUUGAAUUAGAAGC&GCUUCU--UUCAAAUUGUUUUUC	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN67139_c0_g1_1004_TPlot.pdf
TRINITY_DN67139_c0_g1:1007	si_a64	TRINITY_DN67139_c0_g1	996	1018	1007	-29.40	-20.00	0.680272108843537	9	4-9,1015-1010;10-21,1007-996	1-3,1018-1016[UP5];x-x,1009-1008[BULt]	((((((((((((..((((((...&...))))))--))))))))))))	AAACAAUUUGAAUUAGAAGCAAU&CUCGCUUCU--UUCAAAUUGUUU	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN67139_c0_g1_1007_TPlot.pdf
TRINITY_DN67139_c0_g1:1029	si_s76	TRINITY_DN67139_c0_g1	1018	1038	1029	-23.60	-20.20	0.85593220338983	8.5	5-20,1034-1019	1-4,1038-1035[UP5];21-21,1018-1018[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGAAAGGAAAGAAAAAUUGG&AUUUUUUUUCUUUCCUUUCUU	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN67139_c0_g1_1029_TPlot.pdf
TRINITY_DN67139_c0_g1:998	si_a73	TRINITY_DN67139_c0_g1	987	1007	998	-21.90	-17.10	0.780821917808219	6.5	1-15,1007-993	16-21,992-987[UP3]	......(((((((((((((((&)))))))))))))))......	UUACAAGAGAAACAAUUUGAA&UUCAAAUUGUUUUUCAUUAUU	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN67139_c0_g1_998_TPlot.pdf
TRINITY_DN67139_c0_g1:999	si_a72	TRINITY_DN67139_c0_g1	988	1008	999	-21.90	-17.30	0.789954337899544	6.5	2-16,1007-993	1-1,1008-1008[UP5];17-21,992-988[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UACAAGAGAAACAAUUUGAAU&UUUCAAAUUGUUUUUCAUUAU	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN67139_c0_g1_999_TPlot.pdf
TRINITY_DN6713_c0_g1:1751	si_s553	TRINITY_DN6713_c0_g1	1740	1760	1751	-23.50	-15.30	0.651063829787234	12	6-12,1755-1749;15-21,1746-1740	1-5,1760-1756[UP5];13-14,1748-1747[SIL]	(((((((..(((((((.....&.....)))))))..)))))))	CCGAAAACUUUAGUUCGUAGU&AAAUAGAAUUAAUAUUUUCGG	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN6713_c0_g1_1751_TPlot.pdf
TRINITY_DN6715_c0_g1:485	si_a73	TRINITY_DN6715_c0_g1	474	494	485	-21.90	-14.30	0.65296803652968	7	1-6,494-489;8-12,487-483;14-21,481-474	7-7,488-488[SIL];13-13,482-482[SIL]	((((((((.(((((.((((((&)))))).))))).))))))))	GGUGAUGACGAAUAUUUUGAG&UUCAAAUUGUUUUUCAUUAUU	2	0.99999999718923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6715_c0_g1_485_TPlot.pdf
TRINITY_DN67196_c0_g1:202	si_a73	TRINITY_DN67196_c0_g1	191	211	202	-21.90	-16.00	0.730593607305936	8	4-19,208-193	1-3,211-209[UP5];20-21,192-191[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUUAAUGAAAAGCAAUUUAAG&UUCAAAUUGUUUUUCAUUAUU	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN67196_c0_g1_202_TPlot.pdf
TRINITY_DN671_c0_g1:1045	si_a338	TRINITY_DN671_c0_g1	1034	1054	1045	-31.10	-20.48	0.658520900321543	8	1-4,1054-1051;8-20,1047-1035	5-7,1050-1048[SIL];21-21,1034-1034[UP3]	.(((((((((((((...((((&))))...))))))))))))).	AAAUAUUUUUGGGAAGUGGAA&UUCCUUGUCCCGAAAAUAUUA	3	0.997875319333267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a338_TRINITY_DN671_c0_g1_1045_TPlot.pdf
TRINITY_DN671_c0_g1:1046	si_a337	TRINITY_DN671_c0_g1	1035	1055	1046	-30.80	-20.18	0.655194805194805	7.5	2-5,1054-1051;9-21,1047-1035	1-1,1055-1055[UP5];6-8,1050-1048[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	AAUAUUUUUGGGAAGUGGAAC&AUUCCUUGUCCCGAAAAUAUU	3	0.999719383017048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN671_c0_g1_1046_TPlot.pdf
TRINITY_DN671_c0_g1:1144	si_a865	TRINITY_DN671_c0_g1	1133	1152	1144	-24.00	-17.02	0.709166666666667	9	1-7,1152-1146;12-21,1142-1133	8-11,1145-1143[AILq]	((((((((((...-(((((((&)))))))....))))))))))	AACUAAAUCUGAC-UAGUUGG&CCAAUUAUUAAAGAUUUAGUU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a865_TRINITY_DN671_c0_g1_1144_TPlot.pdf
TRINITY_DN671_c0_g1:1145	si_a864	TRINITY_DN671_c0_g1	1134	1153	1145	-25.00	-17.72	0.7088	9	1-8,1153-1146;13-21,1142-1134	9-12,1145-1143[AILq]	(((((((((...-((((((((&))))))))....)))))))))	ACUAAAUCUGAC-UAGUUGGA&UCCAAUUAUUAAAGAUUUAGU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a864_TRINITY_DN671_c0_g1_1145_TPlot.pdf
TRINITY_DN671_c0_g1:1149	si_s689	TRINITY_DN671_c0_g1	1137	1158	1149	-26.50	-20.40	0.769811320754717	6	2-16,1157-1143;17-21,1141-1137	1-1,1158-1158[UP5];x-x,1142-1142[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	AAAUCUGACUAGUUGGACUUAA&AUGAGUUUAAUUAGUC-GAUUU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN671_c0_g1_1149_TPlot.pdf
TRINITY_DN671_c0_g1:1150	si_s688	TRINITY_DN671_c0_g1	1138	1159	1150	-28.20	-19.70	0.698581560283688	8	3-17,1157-1143;18-21,1141-1138	1-2,1159-1158[UP5];x-x,1142-1142[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	AAUCUGACUAGUUGGACUUAAA&CAUGAGUUUAAUUAGUC-GAUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN671_c0_g1_1150_TPlot.pdf
TRINITY_DN671_c0_g1:1153	si_s685	TRINITY_DN671_c0_g1	1142	1162	1153	-27.80	-18.10	0.651079136690648	13	6-21,1157-1142	1-5,1162-1158[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGACUAGUUGGACUUAAAAAA&AAACAUGAGUUUAAUUAGUCG	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s685_TRINITY_DN671_c0_g1_1153_TPlot.pdf
TRINITY_DN671_c0_g1:1517	si_s861	TRINITY_DN671_c0_g1	1506	1525	1517	-40.10	-26.10	0.650872817955112	7.5	1-5,1525-1521;7-11,1520-1516;14-20,1513-1507	6-6,x-x[BULq];12-13,1515-1514[SIL];21-21,1506-1506[UP3]	.(((((((..(((((-(((((&))))).)))))..))))))).	AGGGGCCGUAAGGUC-AGGAG&CUCCUAGACCUACCGGUCUUA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s861_TRINITY_DN671_c0_g1_1517_TPlot.pdf
TRINITY_DN671_c0_g1:1531	si_s618	TRINITY_DN671_c0_g1	1520	1541	1531	-30.30	-19.70	0.65016501650165	13	5-9,1537-1533;11-20,1530-1521	1-4,1541-1538[UP5];10-10,1532-1531[AILt];21-21,1520-1520[UP3]	.((((((((((..(((((....&....)))))-.)))))))))).	CAGGAGAUCGCGGUGGAUAAUC&UUAAAUCCA-AGCGAUCUUUUC	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN671_c0_g1_1531_TPlot.pdf
TRINITY_DN671_c0_g1:1533	si_s617	TRINITY_DN671_c0_g1	1521	1542	1533	-28.30	-19.70	0.696113074204947	14	6-10,1537-1533;12-21,1530-1521	1-5,1542-1538[UP5];11-11,1532-1531[AILt]	((((((((((..(((((.....&.....)))))-.))))))))))	AGGAGAUCGCGGUGGAUAAUCC&UUUAAAUCCA-AGCGAUCUUUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN671_c0_g1_1533_TPlot.pdf
TRINITY_DN671_c0_g1:1534	si_s616	TRINITY_DN671_c0_g1	1522	1543	1534	-28.30	-19.00	0.671378091872792	16	7-11,1537-1533;13-21,1530-1522	1-6,1543-1538[UP5];12-12,1532-1531[AILt]	(((((((((..(((((......&......)))))-.)))))))))	GGAGAUCGCGGUGGAUAAUCCA&UUUUAAAUCCA-AGCGAUCUUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN671_c0_g1_1534_TPlot.pdf
TRINITY_DN671_c0_g1:1535	si_s615	TRINITY_DN671_c0_g1	1523	1544	1535	-28.30	-18.70	0.660777385159011	16.5	8-12,1537-1533;14-21,1530-1523	1-7,1544-1538[UP5];13-13,1532-1531[AILt]	((((((((..(((((.......&.......)))))-.))))))))	GAGAUCGCGGUGGAUAAUCCAC&UUUUUAAAUCCA-AGCGAUCUU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s615_TRINITY_DN671_c0_g1_1535_TPlot.pdf
TRINITY_DN671_c0_g1:2224	si_a642	TRINITY_DN671_c0_g1	2211	2233	2224	-25.90	-17.28	0.667181467181467	10.5	4-15,2230-2219;18-21,2214-2211	1-3,2233-2231[UP5];16-17,2218-2215[AILt]	((((....((((((((((((...&...))))))))))))--..))))	CCGACCCUUGUUGCUCAAAACGA&UUUUUUUGAGUAAUA--UAUCGG	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN671_c0_g1_2224_TPlot.pdf
TRINITY_DN671_c0_g1:2291	si_a141	TRINITY_DN671_c0_g1	2280	2300	2291	-23.80	-16.00	0.672268907563025	13	7-21,2294-2280	1-6,2300-2295[UP5]	(((((((((((((((......&......)))))))))))))))	UAAAAUGACGACGAUAUGCUC&UAAUUAAUCGUUGUUGUUUUA	2	0.999998204552403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN671_c0_g1_2291_TPlot.pdf
TRINITY_DN671_c0_g1:2651	si_s196	TRINITY_DN671_c0_g1	2640	2660	2651	-29.30	-19.60	0.668941979522184	7	1-18,2660-2643	19-21,2642-2640[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAAGGUACAUUUUGAGAUAAU&AUUAUUUUGGAAUGUACCAGU	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN671_c0_g1_2651_TPlot.pdf
TRINITY_DN671_c0_g1:616	si_a119	TRINITY_DN671_c0_g1	605	625	616	-30.30	-21.80	0.71947194719472	8	2-16,624-610	1-1,625-625[UP5];17-21,609-605[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GGCUUCUAUGAGACAAGCUCA&CGAGCUUGUUUUAUAGCAAUA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN671_c0_g1_616_TPlot.pdf
TRINITY_DN671_c0_g1:617	si_a118	TRINITY_DN671_c0_g1	606	626	617	-30.70	-21.80	0.710097719869707	8.5	3-17,624-610	1-2,626-625[UP5];18-21,609-606[UP3]	....(((((((((((((((..&..)))))))))))))))....	GCUUCUAUGAGACAAGCUCAA&ACGAGCUUGUUUUAUAGCAAU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN671_c0_g1_617_TPlot.pdf
TRINITY_DN671_c0_g1:618	si_a117	TRINITY_DN671_c0_g1	607	627	618	-31.00	-21.80	0.703225806451613	9.5	4-18,624-610	1-3,627-625[UP5];19-21,609-607[UP3]	...(((((((((((((((...&...)))))))))))))))...	CUUCUAUGAGACAAGCUCAAA&UACGAGCUUGUUUUAUAGCAA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN671_c0_g1_618_TPlot.pdf
TRINITY_DN671_c0_g1:622	si_a113	TRINITY_DN671_c0_g1	611	631	622	-26.20	-19.40	0.740458015267176	14	8-21,624-611	1-7,631-625[UP5]	((((((((((((((.......&.......))))))))))))))	UAUGAGACAAGCUCAAAGUGC&AAAAUACGAGCUUGUUUUAUA	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN671_c0_g1_622_TPlot.pdf
TRINITY_DN671_c0_g1:623	si_a112	TRINITY_DN671_c0_g1	612	632	623	-26.20	-17.90	0.683206106870229	16	9-21,624-612	1-8,632-625[UP5]	(((((((((((((........&........)))))))))))))	AUGAGACAAGCUCAAAGUGCA&UAAAAUACGAGCUUGUUUUAU	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN671_c0_g1_623_TPlot.pdf
TRINITY_DN671_c0_g1:753	si_a23	TRINITY_DN671_c0_g1	742	762	753	-22.80	-15.30	0.671052631578947	10	3-17,760-746	1-2,762-761[UP5];18-21,745-742[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAGAAGAACUGAAAAUGGAAU&UAUUUAUUUUUAGUUCUAAGA	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN671_c0_g1_753_TPlot.pdf
TRINITY_DN671_c0_g1:754	si_a22	TRINITY_DN671_c0_g1	743	763	754	-23.50	-15.30	0.651063829787234	11	4-18,760-746	1-3,763-761[UP5];19-21,745-743[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGAAGAACUGAAAAUGGAAUU&CUAUUUAUUUUUAGUUCUAAG	3	0.999999482553996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN671_c0_g1_754_TPlot.pdf
TRINITY_DN6722_c0_g2:1058	si_s807	TRINITY_DN6722_c0_g2	1043	1067	1058	-28.90	-18.88	0.653287197231834	15.5	3-10,1065-1058;12-20,1052-1044	1-2,1067-1066[UP5];11-11,1057-1053[AILt];21-21,1043-1043[UP3]	.(((((((((.....((((((((..&..))))))))----.))))))))).	GAAGAAGAGGAACAGGACGAAGACA&UAUCUUCGUU----ACCUUUUCUUA	4	0.999999999999884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6722_c0_g2_1058_TPlot.pdf
TRINITY_DN6722_c0_g2:998	si_s79	TRINITY_DN6722_c0_g2	986	1008	998	-26.20	-17.20	0.656488549618321	9	3-8,1006-1001;10-13,998-995;14-21,993-986	1-2,1008-1007[UP5];9-9,1000-999[AILt];x-x,994-994[BULt]	((((((((.((((..((((((..&..))))))-.))))-))))))))	AAGAAGAACAGGAUCAGAGAAUG&UUUUUUCU-UUCCU-UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6722_c0_g2_998_TPlot.pdf
TRINITY_DN67253_c0_g1:65	si_a118	TRINITY_DN67253_c0_g1	51	75	65	-30.70	-20.20	0.657980456026059	9	2-7,74-69;8-15,67-60;16-21,56-51	1-1,75-75[UP5];x-x,68-68[BULt];x-x,59-57[BULt]	((((((...((((((((.((((((.&.))))))-))))))))---))))))	GUUGCUUCCAUGAAAUACGGCUCGG&ACGAGCU-UGUUUUAU---AGCAAU	2	0.996211839284778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN67253_c0_g1_65_TPlot.pdf
TRINITY_DN67259_c0_g1:169	si_s807	TRINITY_DN67259_c0_g1	151	178	169	-28.90	-19.10	0.660899653979239	19	1-11,178-168;12-20,160-152	x-x,167-161[BULt];21-21,151-151[UP3]	.(((((((((.......(((((((((((&)))))))))))-------))))))))).	CAAGAAGAGGAACGUAAUGAUGGAGAUG&UAUCUUCGUUA-------CCUUUUCUUA	4	0.999999999988679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN67259_c0_g1_169_TPlot.pdf
TRINITY_DN67284_c0_g1:284	si_s73	TRINITY_DN67284_c0_g1	273	295	284	-24.00	-16.10	0.670833333333333	11.5	2-8,294-288;9-19,285-275	1-1,295-295[UP5];x-x,287-286[BULt];20-21,274-273[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	GUGGGAAAGAGGAUCAAGAUGGC&UCUAUUUU--UUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN67284_c0_g1_284_TPlot.pdf
TRINITY_DN67284_c0_g1:285	si_s72	TRINITY_DN67284_c0_g1	274	296	285	-24.10	-16.10	0.66804979253112	12.5	3-9,294-288;10-20,285-275	1-2,296-295[UP5];x-x,287-286[BULt];21-21,274-274[UP3]	.(((((((((((..(((((((..&..)))))))--))))))))))).	UGGGAAAGAGGAUCAAGAUGGCG&UUCUAUUUU--UUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN67284_c0_g1_285_TPlot.pdf
TRINITY_DN6728_c0_g1:3741	si_s86	TRINITY_DN6728_c0_g1	3730	3750	3741	-32.90	-21.70	0.659574468085106	8.5	3-15,3748-3736;18-19,3733-3732	1-2,3750-3749[UP5];16-17,3735-3734[SIL];20-21,3731-3730[UP3]	..((..(((((((((((((..&..)))))))))))))..))..	GACGUUGAGGAAGAAAGGGUG&UUUCCUUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6728_c0_g1_3741_TPlot.pdf
TRINITY_DN6728_c0_g1:3743	si_s84	TRINITY_DN6728_c0_g1	3732	3752	3743	-32.30	-22.80	0.705882352941177	7.5	2-3,3751-3750;5-17,3748-3736;20-21,3733-3732	1-1,3752-3752[UP5];4-4,3749-3749[SIL];18-19,3735-3734[SIL]	((..(((((((((((((.((.&.)).)))))))))))))..))	CGUUGAGGAAGAAAGGGUGGU&UCUUUCCUUUCUUCUUCUUCG	2	0.999998999714606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6728_c0_g1_3743_TPlot.pdf
TRINITY_DN6728_c0_g1:3744	si_s83	TRINITY_DN6728_c0_g1	3733	3759	3744	-30.90	-20.70	0.669902912621359	15.5	1-6,3759-3754;7-18,3747-3736;21-21,3733-3733	x-x,3753-3748[BULt];19-20,3735-3734[SIL]	(..((((((((((((......((((((&))))))------))))))))))))..)	GUUGAGGAAGAAAGGGUGGUUGAAGAA&UUCUUU------CCUUUCUUCUUCUUC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6728_c0_g1_3744_TPlot.pdf
TRINITY_DN6728_c0_g1:3748	si_s809	TRINITY_DN6728_c0_g1	3737	3758	3748	-28.50	-19.40	0.680701754385965	10	1-6,3758-3753;8-18,3750-3740	7-7,3752-3751[AILt];19-21,3739-3737[UP3]	...(((((((((((..((((((&))))))-.)))))))))))...	AGGAAGAAAGGGUGGUUGAAGA&UCUUCG-UUACCUUUUCUUAAU	2	0.999813642315252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6728_c0_g1_3748_TPlot.pdf
TRINITY_DN6728_c0_g1:3750	si_s807	TRINITY_DN6728_c0_g1	3739	3760	3750	-28.90	-19.40	0.671280276816609	10.5	3-8,3758-3753;10-20,3750-3740	1-2,3760-3759[UP5];9-9,3752-3751[AILt];21-21,3739-3739[UP3]	.(((((((((((..((((((..&..))))))-.))))))))))).	GAAGAAAGGGUGGUUGAAGAAG&UAUCUUCG-UUACCUUUUCUUA	4	0.999999998027039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6728_c0_g1_3750_TPlot.pdf
TRINITY_DN6728_c0_g1:3751	si_s806	TRINITY_DN6728_c0_g1	3740	3761	3751	-28.60	-19.00	0.664335664335664	11.5	4-9,3758-3753;11-21,3750-3740	1-3,3761-3759[UP5];10-10,3752-3751[AILt]	(((((((((((..((((((...&...))))))-.)))))))))))	AAGAAAGGGUGGUUGAAGAAGA&UUAUCUUCG-UUACCUUUUCUU	2	0.999999806524868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6728_c0_g1_3751_TPlot.pdf
TRINITY_DN6728_c0_g1:4846	si_s77	TRINITY_DN6728_c0_g1	4834	4855	4846	-25.50	-17.60	0.690196078431373	8.5	2-11,4854-4845;12-19,4843-4836	1-1,4855-4855[UP5];x-x,4844-4844[BULt];20-21,4835-4834[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	CUAGAAGGGGCAAGAAAGAGAU&UUUUUUUUCUU-UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6728_c0_g1_4846_TPlot.pdf
TRINITY_DN6728_c0_g1:4847	si_s76	TRINITY_DN6728_c0_g1	4835	4856	4847	-23.60	-17.60	0.745762711864407	9	3-12,4854-4845;13-20,4843-4836	1-2,4856-4855[UP5];x-x,4844-4844[BULt];21-21,4835-4835[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	UAGAAGGGGCAAGAAAGAGAUU&AUUUUUUUUCUU-UCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6728_c0_g1_4847_TPlot.pdf
TRINITY_DN6728_c0_g1:5580	si_a461	TRINITY_DN6728_c0_g1	5570	5589	5580	-21.50	-14.60	0.67906976744186	4	2-16,5588-5574;18-21,5573-5570	1-1,5589-5589[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	AGUU-UAUAUUAUAUAUGACU&UGUUAUAUAUAAUAUGUAAUU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN6728_c0_g1_5580_TPlot.pdf
TRINITY_DN67292_c0_g1:144	si_s94	TRINITY_DN67292_c0_g1	132	153	144	-35.50	-26.90	0.757746478873239	7	1-10,153-144;11-17,142-136	x-x,143-143[BULt];18-21,135-132[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	CGGCCCGAAGCUGAAGGAGAAG&CUUCUUCUUC-GCUUCGGAUUG	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN67292_c0_g1_144_TPlot.pdf
TRINITY_DN67292_c0_g1:145	si_s93	TRINITY_DN67292_c0_g1	133	154	145	-34.80	-26.90	0.772988505747126	7	2-11,153-144;12-18,142-136	1-1,154-154[UP5];x-x,143-143[BULt];19-21,135-133[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	GGCCCGAAGCUGAAGGAGAAGU&UCUUCUUCUUC-GCUUCGGAUU	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN67292_c0_g1_145_TPlot.pdf
TRINITY_DN67292_c0_g1:147	si_s91	TRINITY_DN67292_c0_g1	135	156	147	-34.70	-26.90	0.77521613832853	8	4-13,153-144;14-20,142-136	1-3,156-154[UP5];x-x,143-143[BULt];21-21,135-135[UP3]	.(((((((.((((((((((...&...))))))))))-))))))).	CCCGAAGCUGAAGGAGAAGUUG&UUUCUUCUUCUUC-GCUUCGGA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN67292_c0_g1_147_TPlot.pdf
TRINITY_DN672_c0_g1:1163	si_a406	TRINITY_DN672_c0_g1	1152	1172	1163	-19.80	-13.10	0.661616161616162	10	1-14,1172-1159	15-21,1158-1152[UP3]	.......((((((((((((((&)))))))))))))).......	AUUUUCCAUGGACAAAACGAU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN672_c0_g1_1163_TPlot.pdf
TRINITY_DN672_c0_g1:1164	si_a405	TRINITY_DN672_c0_g1	1153	1173	1164	-19.80	-14.00	0.707070707070707	8.5	1-15,1173-1159	16-21,1158-1153[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUCCAUGGACAAAACGAUU&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999989576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN672_c0_g1_1164_TPlot.pdf
TRINITY_DN672_c0_g1:1165	si_a404	TRINITY_DN672_c0_g1	1154	1174	1165	-21.70	-15.60	0.71889400921659	7.5	1-16,1174-1159	17-21,1158-1154[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUCCAUGGACAAAACGAUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.999983337958052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN672_c0_g1_1165_TPlot.pdf
TRINITY_DN672_c0_g1:1170	si_a399	TRINITY_DN672_c0_g1	1159	1179	1170	-22.60	-15.60	0.690265486725664	12	6-21,1174-1159	1-5,1179-1175[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGGACAAAACGAUUUAAUCG&AUAUAGAAUUGUUUUGUUUAU	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN672_c0_g1_1170_TPlot.pdf
TRINITY_DN67312_c0_g1:205	si_a474	TRINITY_DN67312_c0_g1	194	214	205	-23.60	-15.38	0.651694915254237	10.5	3-4,212-211;8-21,207-194	1-2,214-213[UP5];5-7,210-208[SIL]	((((((((((((((...((..&..))...))))))))))))))	UCUGUAUGGCAAUAUAAACGA&AUGUAAUUAUUGUUAUAUAGA	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN67312_c0_g1_205_TPlot.pdf
TRINITY_DN6731_c0_g1:227	si_s306	TRINITY_DN6731_c0_g1	216	237	227	-32.30	-21.30	0.659442724458204	9	4-9,234-229;10-18,227-219;20-21,217-216	1-3,237-235[UP5];x-x,228-228[BULt];19-19,218-218[SIL]	((.(((((((((.((((((...&...))))))-))))))))).))	GAUGGACAGAAUAUUUUGCGUU&AUUGCGAAA-AUUCUGUCCUUC	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN6731_c0_g1_227_TPlot.pdf
TRINITY_DN67320_c0_g1:81	si_a319	TRINITY_DN67320_c0_g1	70	90	81	-22.40	-17.10	0.763392857142857	7	1-3,90-88;5-18,86-73	4-4,87-87[SIL];19-21,72-70[UP3]	...((((((((((((((.(((&))).))))))))))))))...	GAAGAGAAAAUCAUGGAAAGA&UUUAUCCAUGAUUUUUUUAUU	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN67320_c0_g1_81_TPlot.pdf
TRINITY_DN6734_c0_g1:5524	si_s295	TRINITY_DN6734_c0_g1	5510	5533	5524	-32.20	-23.80	0.739130434782609	8	2-13,5532-5521;14-17,5517-5514	1-1,5533-5533[UP5];x-x,5520-5518[BULt];18-21,5513-5510[UP3]	....((((...((((((((((((.&.))))))))))))---))))....	GGCCCGCAGAAAUUCCAAUCGACA&AGUCGAUUGGAAU---UGCGAAAA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN6734_c0_g1_5524_TPlot.pdf
TRINITY_DN6734_c0_g1:5527	si_s292	TRINITY_DN6734_c0_g1	5513	5545	5527	-36.60	-24.00	0.655737704918033	23	1-4,5545-5542;5-16,5532-5521;17-20,5517-5514	x-x,5541-5533[BULt];x-x,5520-5518[BULt];21-21,5513-5513[UP3]	.((((...((((((((((((.........((((&))))---------))))))))))))---)))).	CCGCAGAAAUUCCAAUCGACAUGCGCGCCUGGG&CCUA---------GUCGAUUGGAAU---UGCGA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN6734_c0_g1_5527_TPlot.pdf
TRINITY_DN6734_c0_g1:5546	si_a504	TRINITY_DN6734_c0_g1	5535	5555	5546	-32.90	-22.40	0.680851063829787	8.5	1-13,5555-5543;15-16,5541-5540;19-21,5537-5535	14-14,5542-5542[SIL];17-18,5539-5538[SIL]	(((..((.(((((((((((((&))))))))))))).))..)))	GCGCGCCUGGGGAGACGGGGA&UUUUCGUCUUCCUUGGAAUGU	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN6734_c0_g1_5546_TPlot.pdf
TRINITY_DN6734_c0_g1:5547	si_a503	TRINITY_DN6734_c0_g1	5536	5556	5547	-32.10	-21.40	0.666666666666667	8.5	1-14,5556-5543;16-17,5541-5540;20-21,5537-5536	15-15,5542-5542[SIL];18-19,5539-5538[SIL]	((..((.((((((((((((((&)))))))))))))).))..))	CGCGCCUGGGGAGACGGGGAG&UUUUUCGUCUUCCUUGGAAUG	4	0.999999904387963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN6734_c0_g1_5547_TPlot.pdf
TRINITY_DN6734_c0_g1:5699	si_a769	TRINITY_DN6734_c0_g1	5688	5708	5699	-26.70	-17.40	0.651685393258427	12	4-9,5705-5700;12-21,5697-5688	1-3,5708-5706[UP5];10-11,5699-5698[SIL]	((((((((((..((((((...&...))))))..))))))))))	AGGAGUUGGAGUGGUCAAUCG&UUUUUGAUUGAUUCAACUCUU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN6734_c0_g1_5699_TPlot.pdf
TRINITY_DN6734_c0_g1:6147	si_a118	TRINITY_DN6734_c0_g1	6137	6156	6147	-30.70	-20.40	0.664495114006515	6.5	2-14,6155-6143;16-18,6142-6140	1-1,6156-6156[UP5];15-15,x-x[BULq];19-21,6139-6137[UP3]	...(((-(((((((((((((.&.))))))))))))).)))...	UCCGUU-UAGAACAAGCUCGA&ACGAGCUUGUUUUAUAGCAAU	2	0.989999048776266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN6734_c0_g1_6147_TPlot.pdf
TRINITY_DN6734_c0_g1:6149	si_a116	TRINITY_DN6734_c0_g1	6139	6158	6149	-31.10	-20.40	0.655948553054662	8	4-16,6155-6143;18-20,6142-6140	1-3,6158-6156[UP5];17-17,x-x[BULq];21-21,6139-6139[UP3]	.(((-(((((((((((((...&...))))))))))))).))).	CGUU-UAGAACAAGCUCGAUC&AUACGAGCUUGUUUUAUAGCA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN6734_c0_g1_6149_TPlot.pdf
TRINITY_DN6734_c0_g1:6154	si_a111	TRINITY_DN6734_c0_g1	6143	6163	6154	-26.20	-18.90	0.721374045801527	15.5	9-21,6155-6143	1-8,6163-6156[UP5]	(((((((((((((........&........)))))))))))))	UAGAACAAGCUCGAUCCGAAU&AUAAAAUACGAGCUUGUUUUA	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN6734_c0_g1_6154_TPlot.pdf
TRINITY_DN6734_c0_g1:6406	si_a774	TRINITY_DN6734_c0_g1	6395	6416	6406	-29.20	-21.70	0.743150684931507	9	1-9,6416-6408;11-18,6405-6398	10-10,6407-6406[AILt];19-21,6397-6395[UP3]	...((((((((..(((((((((&)))))))))-.))))))))...	CGAAGGGGAGUGCGAAUCAGUC&GAUUGAUUC-AACUCUUCUAUU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN6734_c0_g1_6406_TPlot.pdf
TRINITY_DN6734_c0_g1:6408	si_a773	TRINITY_DN6734_c0_g1	6396	6417	6408	-29.90	-21.90	0.732441471571906	9	2-10,6416-6408;12-19,6405-6398	1-1,6417-6417[UP5];11-11,6407-6406[AILt];20-21,6397-6396[UP3]	..((((((((..(((((((((.&.)))))))))-.))))))))..	GAAGGGGAGUGCGAAUCAGUCU&UGAUUGAUUC-AACUCUUCUAU	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a773_TRINITY_DN6734_c0_g1_6408_TPlot.pdf
TRINITY_DN6734_c0_g1:6410	si_a771	TRINITY_DN6734_c0_g1	6398	6419	6410	-29.40	-21.60	0.73469387755102	10	4-12,6416-6408;14-21,6405-6398	1-3,6419-6417[UP5];13-13,6407-6406[AILt]	((((((((..(((((((((...&...)))))))))-.))))))))	AGGGGAGUGCGAAUCAGUCUGC&UUUGAUUGAUUC-AACUCUUCU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN6734_c0_g1_6410_TPlot.pdf
TRINITY_DN6734_c0_g1:6525	si_s93	TRINITY_DN6734_c0_g1	6513	6534	6525	-34.80	-23.20	0.666666666666667	6.5	1-14,6534-6521;15-21,6519-6513	x-x,6520-6520[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	AGUUUGAGGGUGGAGGAGAAGG&UCUUCUUCUUCGCU-UCGGAUU	4	0.999999999985496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN6734_c0_g1_6525_TPlot.pdf
TRINITY_DN67353_c0_g1:105	si_a406	TRINITY_DN67353_c0_g1	94	114	105	-19.80	-13.50	0.681818181818182	10	1-15,114-100	16-21,99-94[UP3]	......(((((((((((((((&)))))))))))))))......	UUUCAUUAUGAAUAAAGCAGU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999845335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN67353_c0_g1_105_TPlot.pdf
TRINITY_DN67353_c0_g1:405	si_a64	TRINITY_DN67353_c0_g1	387	414	405	-29.40	-20.78	0.706802721088435	11.5	1-13,414-402;16-21,392-387	14-15,401-393[AILt]	((((((.........(((((((((((((&)))))))))))))-------..))))))	GAGCAGGUACUAGAAUGAAGGAAGCGAG&CUCGCUUCUUUCA-------AAUUGUUU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN67353_c0_g1_405_TPlot.pdf
TRINITY_DN67374_c0_g1:779	si_s384	TRINITY_DN67374_c0_g1	764	788	779	-38.50	-26.38	0.685194805194805	15	1-3,788-786;5-12,784-777;14-20,771-765	4-4,785-785[SIL];13-13,776-772[AILt];21-21,764-764[UP3]	.(((((((.....((((((((.(((&))).))))))))----.))))))).	AUGGAAUGCCGCCGAGGUGGAGGCG&CGUGUCCGCCUU----ACAUUCCAA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN67374_c0_g1_779_TPlot.pdf
TRINITY_DN67374_c0_g1:856	si_s173	TRINITY_DN67374_c0_g1	845	869	856	-39.70	-26.32	0.662972292191436	20	1-4,869-866;9-19,857-847	5-8,865-858[AILt];20-21,846-845[UP3]	..(((((((((((........((((&))))----....)))))))))))..	CGACUCGGGCGUCGUGGAACUUCCC&GGGG----UAAAGAUGCCCGAGUAA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN67374_c0_g1_856_TPlot.pdf
TRINITY_DN6739_c0_g1:1927	si_s540	TRINITY_DN6739_c0_g1	1916	1936	1927	-29.10	-19.30	0.663230240549828	10	1-13,1936-1924	14-21,1923-1916[UP3]	........(((((((((((((&)))))))))))))........	GACAUGGAUGAUCGGAUCGGA&UUUGAUCCGAUCAAAAUAGAA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s540_TRINITY_DN6739_c0_g1_1927_TPlot.pdf
TRINITY_DN6739_c0_g1:1928	si_s539	TRINITY_DN6739_c0_g1	1917	1937	1928	-29.00	-19.70	0.679310344827586	9.5	1-14,1937-1924	15-21,1923-1917[UP3]	.......((((((((((((((&)))))))))))))).......	ACAUGGAUGAUCGGAUCGGAG&UUUUGAUCCGAUCAAAAUAGA	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s539_TRINITY_DN6739_c0_g1_1928_TPlot.pdf
TRINITY_DN6739_c0_g1:1930	si_s537	TRINITY_DN6739_c0_g1	1919	1939	1930	-26.40	-19.80	0.75	11	3-16,1937-1924	1-2,1939-1938[UP5];17-21,1923-1919[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUGGAUGAUCGGAUCGGAGCC&AUUUUUGAUCCGAUCAAAAUA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN6739_c0_g1_1930_TPlot.pdf
TRINITY_DN6739_c0_g1:1931	si_s536	TRINITY_DN6739_c0_g1	1920	1940	1931	-27.70	-19.80	0.714801444043321	12	4-17,1937-1924	1-3,1940-1938[UP5];18-21,1923-1920[UP3]	....((((((((((((((...&...))))))))))))))....	UGGAUGAUCGGAUCGGAGCCA&CAUUUUUGAUCCGAUCAAAAU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN6739_c0_g1_1931_TPlot.pdf
TRINITY_DN6739_c0_g1:1932	si_s535	TRINITY_DN6739_c0_g1	1921	1941	1932	-28.60	-19.80	0.692307692307692	13	5-18,1937-1924	1-4,1941-1938[UP5];19-21,1923-1921[UP3]	...((((((((((((((....&....))))))))))))))...	GGAUGAUCGGAUCGGAGCCAC&UCAUUUUUGAUCCGAUCAAAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN6739_c0_g1_1932_TPlot.pdf
TRINITY_DN6739_c0_g1:1935	si_s532	TRINITY_DN6739_c0_g1	1924	1944	1935	-28.70	-19.60	0.682926829268293	16	8-21,1937-1924	1-7,1944-1938[UP5]	((((((((((((((.......&.......))))))))))))))	UGAUCGGAUCGGAGCCACCGA&AAAUCAUUUUUGAUCCGAUCA	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN6739_c0_g1_1935_TPlot.pdf
TRINITY_DN6739_c0_g1:2091	si_a507	TRINITY_DN6739_c0_g1	2081	2100	2091	-34.90	-23.00	0.659025787965616	5.5	1-5,2100-2096;7-12,2094-2089;14-15,2087-2086;17-21,2085-2081	6-6,2095-2095[SIL];13-13,2088-2088[SIL];16-16,x-x[BULq]	(((((-((.((((((.(((((&))))).)))))).)).)))))	CUUGC-UUGCAAGGAUGGCGA&UCGUCUUCCUUGGAAUGUAAG	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN6739_c0_g1_2091_TPlot.pdf
TRINITY_DN6739_c0_g1:2103	si_s318	TRINITY_DN6739_c0_g1	2091	2112	2103	-32.80	-24.00	0.731707317073171	7.5	1-14,2112-2099;16-17,2096-2095;20-20,2092-2092	15-15,2098-2097[AILt];18-19,2094-2093[SIL];21-21,2091-2091[UP3]	.(..((..((((((((((((((&))))))))))))))-.))..).	AGGAUGGCGACGAGAAGGACGG&CUGUCCUUCUUGUU-ACAAACA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN6739_c0_g1_2103_TPlot.pdf
TRINITY_DN6739_c0_g1:2104	si_s317	TRINITY_DN6739_c0_g1	2092	2113	2104	-33.10	-23.70	0.716012084592145	7	1-15,2113-2099;17-18,2096-2095;21-21,2092-2092	16-16,2098-2097[AILt];19-20,2094-2093[SIL]	(..((..(((((((((((((((&)))))))))))))))-.))..)	GGAUGGCGACGAGAAGGACGGG&UCUGUCCUUCUUGUU-ACAAAC	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s317_TRINITY_DN6739_c0_g1_2104_TPlot.pdf
TRINITY_DN6739_c0_g1:2105	si_s316	TRINITY_DN6739_c0_g1	2093	2114	2105	-31.50	-23.20	0.736507936507936	8	2-16,2113-2099;18-19,2096-2095	1-1,2114-2114[UP5];17-17,2098-2097[AILt];20-21,2094-2093[UP3]	..((..(((((((((((((((.&.)))))))))))))))-.))..	GAUGGCGACGAGAAGGACGGGC&UUCUGUCCUUCUUGUU-ACAAA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN6739_c0_g1_2105_TPlot.pdf
TRINITY_DN6739_c0_g1:2106	si_s315	TRINITY_DN6739_c0_g1	2094	2115	2106	-31.60	-23.20	0.734177215189873	9	3-17,2113-2099;19-20,2096-2095	1-2,2115-2114[UP5];18-18,2098-2097[AILt];21-21,2094-2094[UP3]	.((..(((((((((((((((..&..)))))))))))))))-.)).	AUGGCGACGAGAAGGACGGGCG&AUUCUGUCCUUCUUGUU-ACAA	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN6739_c0_g1_2106_TPlot.pdf
TRINITY_DN6739_c0_g1:2107	si_s314	TRINITY_DN6739_c0_g1	2095	2116	2107	-31.50	-23.00	0.73015873015873	10	4-18,2113-2099;20-21,2096-2095	1-3,2116-2114[UP5];19-19,2098-2097[AILt]	((..(((((((((((((((...&...)))))))))))))))-.))	UGGCGACGAGAAGGACGGGCGU&AAUUCUGUCCUUCUUGUU-ACA	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN6739_c0_g1_2107_TPlot.pdf
TRINITY_DN6739_c0_g1:2109	si_s312	TRINITY_DN6739_c0_g1	2098	2118	2109	-29.00	-23.00	0.793103448275862	13	6-20,2113-2099	1-5,2118-2114[UP5];21-21,2098-2098[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGACGAGAAGGACGGGCGUUC&AAAAUUCUGUCCUUCUUGUUA	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN6739_c0_g1_2109_TPlot.pdf
TRINITY_DN6739_c0_g1:2110	si_s311	TRINITY_DN6739_c0_g1	2099	2118	2110	-30.60	-23.30	0.761437908496732	9	1-3,2118-2116;7-21,2113-2099	4-6,2115-2114[AILq]	(((((((((((((((..-(((&)))...)))))))))))))))	GACGAGAAGGACGGGCG-UUC&GAAAAUUCUGUCCUUCUUGUU	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN6739_c0_g1_2110_TPlot.pdf
TRINITY_DN6739_c0_g1:2111	si_s310	TRINITY_DN6739_c0_g1	2100	2119	2111	-32.10	-23.60	0.735202492211838	8.5	1-4,2119-2116;8-21,2113-2100	5-7,2115-2114[AILq]	((((((((((((((..-((((&))))...))))))))))))))	ACGAGAAGGACGGGCG-UUCG&CGAAAAUUCUGUCCUUCUUGU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN6739_c0_g1_2111_TPlot.pdf
TRINITY_DN6739_c0_g1:2112	si_s309	TRINITY_DN6739_c0_g1	2101	2120	2112	-33.80	-26.60	0.78698224852071	8.5	1-5,2120-2116;9-21,2113-2101	6-8,2115-2114[AILq]	(((((((((((((..-(((((&)))))...)))))))))))))	CGAGAAGGACGGGCG-UUCGC&GCGAAAAUUCUGUCCUUCUUG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN6739_c0_g1_2112_TPlot.pdf
TRINITY_DN6739_c0_g1:2113	si_s308	TRINITY_DN6739_c0_g1	2102	2121	2113	-32.80	-24.30	0.740853658536585	9.5	2-6,2120-2116;10-21,2113-2102	1-1,2121-2121[UP5];7-9,2115-2114[AILq]	((((((((((((..-(((((.&.)))))...))))))))))))	GAGAAGGACGGGCG-UUCGCG&UGCGAAAAUUCUGUCCUUCUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN6739_c0_g1_2113_TPlot.pdf
TRINITY_DN6739_c0_g1:2114	si_s307	TRINITY_DN6739_c0_g1	2103	2122	2114	-32.90	-24.40	0.741641337386018	8.5	1-7,2122-2116;11-21,2113-2103	8-10,2115-2114[AILq]	(((((((((((..-(((((((&)))))))...)))))))))))	AGAAGGACGGGCG-UUCGCGA&UUGCGAAAAUUCUGUCCUUCU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN6739_c0_g1_2114_TPlot.pdf
TRINITY_DN6739_c0_g1:2115	si_s306	TRINITY_DN6739_c0_g1	2104	2123	2115	-32.30	-24.10	0.746130030959752	8.5	1-8,2123-2116;12-21,2113-2104	9-11,2115-2114[AILq]	((((((((((..-((((((((&))))))))...))))))))))	GAAGGACGGGCG-UUCGCGAU&AUUGCGAAAAUUCUGUCCUUC	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN6739_c0_g1_2115_TPlot.pdf
TRINITY_DN6739_c0_g1:2116	si_s305	TRINITY_DN6739_c0_g1	2105	2124	2116	-30.30	-22.10	0.729372937293729	8	1-9,2124-2116;13-21,2113-2105	10-12,2115-2114[AILq]	(((((((((..-(((((((((&)))))))))...)))))))))	AAGGACGGGCG-UUCGCGAUU&AAUUGCGAAAAUUCUGUCCUU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN6739_c0_g1_2116_TPlot.pdf
TRINITY_DN673_c0_g1:3472	si_s801	TRINITY_DN673_c0_g1	3460	3485	3472	-28.20	-19.20	0.680851063829787	13	1-5,3485-3481;6-17,3476-3465;18-21,3463-3460	x-x,3480-3477[BULt];x-x,3464-3464[BULt]	((((.((((((((((((....(((((&)))))----))))))))))))-))))	GAGGAUAAUGAGGAUGACGAUAAUGC&GUAUU----UUAUCUUCGUUA-CCUU	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN673_c0_g1_3472_TPlot.pdf
TRINITY_DN673_c0_g1:3801	si_a633	TRINITY_DN673_c0_g1	3790	3810	3801	-26.40	-17.20	0.651515151515151	6.5	2-4,3809-3807;6-8,3805-3803;10-20,3801-3791	1-1,3810-3810[UP5];5-5,3806-3806[SIL];9-9,3802-3802[SIL];21-21,3790-3790[UP3]	.(((((((((((.(((.(((.&.))).))).))))))))))).	AACUCGAAAAAAGCGAGAUAC&UUAUGUCGAUUUUUUUGAGUA	4	0.99999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN673_c0_g1_3801_TPlot.pdf
TRINITY_DN673_c0_g1:3884	si_a631	TRINITY_DN673_c0_g1	3873	3893	3884	-25.70	-19.20	0.747081712062257	7.5	4-10,3890-3884;12-21,3882-3873	1-3,3893-3891[UP5];11-11,3883-3883[SIL]	((((((((((.(((((((...&...))))))).))))))))))	CUCGAAAAAAGCGACAUACAA&UAUUAUGUCGAUUUUUUUGAG	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN673_c0_g1_3884_TPlot.pdf
TRINITY_DN673_c1_g1:308	si_a645	TRINITY_DN673_c1_g1	297	318	308	-29.40	-19.40	0.659863945578231	8	1-9,318-310;11-19,307-299	10-10,309-308[AILt];20-21,298-297[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	CCUCCGGUAUAAAUGCUCAAAA&UUUUGAGUA-AUAUAUCGGGAA	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN673_c1_g1_308_TPlot.pdf
TRINITY_DN673_c1_g1:310	si_a644	TRINITY_DN673_c1_g1	298	319	310	-29.30	-19.60	0.668941979522184	8	2-10,318-310;12-20,307-299	1-1,319-319[UP5];11-11,309-308[AILt];21-21,298-298[UP3]	.(((((((((..(((((((((.&.)))))))))-.))))))))).	CUCCGGUAUAAAUGCUCAAAAU&UUUUUGAGUA-AUAUAUCGGGA	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN673_c1_g1_310_TPlot.pdf
TRINITY_DN673_c1_g1:311	si_a643	TRINITY_DN673_c1_g1	299	320	311	-28.30	-19.30	0.681978798586572	9	3-11,318-310;13-21,307-299	1-2,320-319[UP5];12-12,309-308[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	UCCGGUAUAAAUGCUCAAAAUA&UUUUUUGAGUA-AUAUAUCGGG	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN673_c1_g1_311_TPlot.pdf
TRINITY_DN673_c1_g1:312	si_a642	TRINITY_DN673_c1_g1	300	321	312	-25.90	-18.10	0.698841698841699	9.5	4-12,318-310;14-21,307-300	1-3,321-319[UP5];13-13,309-308[AILt]	((((((((..(((((((((...&...)))))))))-.))))))))	CCGGUAUAAAUGCUCAAAAUAU&UUUUUUUGAGUA-AUAUAUCGG	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN673_c1_g1_312_TPlot.pdf
TRINITY_DN673_c1_g1:865	si_s514	TRINITY_DN673_c1_g1	854	874	865	-24.80	-16.30	0.657258064516129	9	1-6,874-869;8-17,867-858	7-7,868-868[SIL];18-21,857-854[UP3]	....((((((((((.((((((&)))))).))))))))))....	AAAAGAAUUGAGGAGGUAGAA&UUCUAUAUUCUUAAUUCGAAA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s514_TRINITY_DN673_c1_g1_865_TPlot.pdf
TRINITY_DN673_c1_g1:866	si_s513	TRINITY_DN673_c1_g1	855	875	866	-24.90	-16.30	0.654618473895582	8.5	2-7,874-869;9-18,867-858	1-1,875-875[UP5];8-8,868-868[SIL];19-21,857-855[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	AAAGAAUUGAGGAGGUAGAAA&AUUCUAUAUUCUUAAUUCGAA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN673_c1_g1_866_TPlot.pdf
TRINITY_DN673_c1_g1:867	si_s512	TRINITY_DN673_c1_g1	856	876	867	-24.80	-16.30	0.657258064516129	9.5	3-8,874-869;10-19,867-858	1-2,876-875[UP5];9-9,868-868[SIL];20-21,857-856[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	AAGAAUUGAGGAGGUAGAAAA&AAUUCUAUAUUCUUAAUUCGA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN673_c1_g1_867_TPlot.pdf
TRINITY_DN67402_c0_g1:210	si_a712	TRINITY_DN67402_c0_g1	200	219	210	-28.20	-19.50	0.691489361702128	6	1-10,219-210;13-19,208-202	11-12,209-209[AILq];20-21,201-200[UP3]	..(((((((.-((((((((((&))))))))))..)))))))..	UUGUAACGAG-AUUUUGGAAU&AUUCCAAAAUAAUCGUUACUC	0	0.0212830231324032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN67402_c0_g1_210_TPlot.pdf
TRINITY_DN6740_c0_g1:1291	si_a76	TRINITY_DN6740_c0_g1	1280	1300	1291	-21.20	-14.20	0.669811320754717	7.5	3-14,1298-1287;16-19,1285-1282	1-2,1300-1299[UP5];15-15,1286-1286[SIL];20-21,1281-1280[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	GCUGAUUAUGAAGAACAAUAU&AAAUUGUUUUUCAUUAUUAAG	2	0.999998510318831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN6740_c0_g1_1291_TPlot.pdf
TRINITY_DN6740_c0_g1:1292	si_a75	TRINITY_DN6740_c0_g1	1281	1301	1292	-21.30	-14.20	0.666666666666667	8.5	4-15,1298-1287;17-20,1285-1282	1-3,1301-1299[UP5];16-16,1286-1286[SIL];21-21,1281-1281[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	CUGAUUAUGAAGAACAAUAUA&CAAAUUGUUUUUCAUUAUUAA	4	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN6740_c0_g1_1292_TPlot.pdf
TRINITY_DN6740_c0_g1:856	si_a142	TRINITY_DN6740_c0_g1	845	865	856	-23.50	-16.00	0.680851063829787	9	2-6,864-860;9-19,857-847	1-1,865-865[UP5];7-8,859-858[SIL];20-21,846-845[UP3]	..(((((((((((..(((((.&.)))))..)))))))))))..	AGGAAACAGCAGCUUUUAAUG&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999836043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6740_c0_g1_856_TPlot.pdf
TRINITY_DN6741_c0_g1:1995	si_s89	TRINITY_DN6741_c0_g1	1982	2010	1995	-35.30	-23.40	0.662889518413598	17	1-7,2010-2004;8-13,1997-1992;14-20,1989-1983	x-x,2003-1998[BULt];x-x,1991-1990[BULt];21-21,1982-1982[UP3]	.(((((((..((((((......(((((((&)))))))------))))))--))))))).	AGGAGCGACAGGAAGAUAAGAAAGAGAGG&CCUUUCU------UCUUCU--UCGCUUCG	2	0.999999999391901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6741_c0_g1_1995_TPlot.pdf
TRINITY_DN6741_c0_g1:1996	si_s88	TRINITY_DN6741_c0_g1	1983	2011	1996	-34.80	-23.00	0.660919540229885	17	2-8,2010-2004;9-14,1997-1992;15-21,1989-1983	1-1,2011-2011[UP5];x-x,2003-1998[BULt];x-x,1991-1990[BULt]	(((((((..((((((......(((((((.&.)))))))------))))))--)))))))	GGAGCGACAGGAAGAUAAGAAAGAGAGGC&UCCUUUCU------UCUUCU--UCGCUUC	2	0.9999999999083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6741_c0_g1_1996_TPlot.pdf
TRINITY_DN67425_c0_g1:568	si_a24	TRINITY_DN67425_c0_g1	557	577	568	-24.20	-16.40	0.677685950413223	6.5	2-17,576-561	1-1,577-577[UP5];18-21,560-557[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAGUGGAACUAGAAAUAAAA&AUUUAUUUUUAGUUCUAAGAC	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN67425_c0_g1_568_TPlot.pdf
TRINITY_DN67425_c0_g1:569	si_a23	TRINITY_DN67425_c0_g1	558	578	569	-22.80	-16.40	0.719298245614035	7.5	3-18,576-561	1-2,578-577[UP5];19-21,560-558[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAGUGGAACUAGAAAUAAAAC&UAUUUAUUUUUAGUUCUAAGA	0	0.089768068285236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN67425_c0_g1_569_TPlot.pdf
TRINITY_DN67425_c0_g1:571	si_a21	TRINITY_DN67425_c0_g1	560	580	571	-24.30	-16.40	0.674897119341564	9.5	5-20,576-561	1-4,580-577[UP5];21-21,560-560[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUGGAACUAGAAAUAAAACAA&CCUAUUUAUUUUUAGUUCUAA	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN67425_c0_g1_571_TPlot.pdf
TRINITY_DN67426_c0_g1:336	si_a489	TRINITY_DN67426_c0_g1	325	345	336	-27.70	-19.10	0.689530685920578	9	5-19,341-327	1-4,345-342[UP5];20-21,326-325[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAAAAACGACAUAUUCGUCG&UAUAGAAUAUGUCGUUUUUCG	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN67426_c0_g1_336_TPlot.pdf
TRINITY_DN67426_c0_g1:338	si_a487	TRINITY_DN67426_c0_g1	327	347	338	-24.80	-19.10	0.770161290322581	11	7-21,341-327	1-6,347-342[UP5]	(((((((((((((((......&......)))))))))))))))	AAAAACGACAUAUUCGUCGUC&UAUAUAGAAUAUGUCGUUUUU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN67426_c0_g1_338_TPlot.pdf
TRINITY_DN6742_c0_g1:639	si_a784	TRINITY_DN6742_c0_g1	628	648	639	-24.70	-16.50	0.668016194331984	7.5	3-4,646-645;7-21,642-628	1-2,648-647[UP5];5-6,644-643[SIL]	(((((((((((((((..((..&..))..)))))))))))))))	AAGAUAGAAAAAUAGCUGAAA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999986679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6742_c0_g1_639_TPlot.pdf
TRINITY_DN6746_c0_g1:623	si_s438	TRINITY_DN6746_c0_g1	612	632	623	-21.20	-14.80	0.69811320754717	11	4-11,629-622;14-21,619-612	1-3,632-630[UP5];12-13,621-620[SIL]	((((((((..((((((((...&...))))))))..))))))))	GUUGUAUGGUAUGUGUGAAGC&UAAUUACAUAUUAUAUAUAAC	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN6746_c0_g1_623_TPlot.pdf
TRINITY_DN67471_c0_g1:366	si_s222	TRINITY_DN67471_c0_g1	356	375	366	-36.30	-24.40	0.672176308539945	6.5	1-2,375-374;4-14,372-362;18-21,359-356	3-3,373-373[SIL];15-17,361-360[AILq]	((((..-(((((((((((.((&)).)))))))))))...))))	UCCUGA-UCAUGCGGUUUGGG&UCGAAACCGCGUGAAUAAGGA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s222_TRINITY_DN67471_c0_g1_366_TPlot.pdf
TRINITY_DN67478_c0_g1:138	si_a548	TRINITY_DN67478_c0_g1	127	147	138	-27.20	-19.10	0.702205882352941	6.5	2-3,146-145;5-7,143-141;9-21,139-127	1-1,147-147[UP5];4-4,144-144[SIL];8-8,140-140[SIL]	(((((((((((((.(((.((.&.)).))).)))))))))))))	GAGAUAGAGAAGUUGAUAGAU&UUCAAUCUAUUUCUUUAUCUC	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN67478_c0_g1_138_TPlot.pdf
TRINITY_DN6747_c0_g1:2977	si_s693	TRINITY_DN6747_c0_g1	2966	2986	2977	-23.90	-16.30	0.682008368200837	10	2-17,2985-2970	1-1,2986-2986[UP5];18-21,2969-2966[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAGGAGUCGAUUGGUUGAAG&GUUUAAUUAGUCGAUUUAUUA	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN6747_c0_g1_2977_TPlot.pdf
TRINITY_DN6747_c0_g1:3701	si_s888	TRINITY_DN6747_c0_g1	3690	3710	3701	-26.80	-18.90	0.705223880597015	17	9-21,3702-3690	1-8,3710-3703[UP5]	(((((((((((((........&........)))))))))))))	AAGGGAGAGCCUGCGUGAUUA&AAAAUAAAUAGGCUUUCUCUU	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN6747_c0_g1_3701_TPlot.pdf
TRINITY_DN6747_c0_g1:926	si_a75	TRINITY_DN6747_c0_g1	915	935	926	-21.30	-16.70	0.784037558685446	5.5	1-4,935-932;6-19,930-917	5-5,931-931[SIL];20-21,916-915[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	UGAGUAAUGAAAAACGUUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN6747_c0_g1_926_TPlot.pdf
TRINITY_DN6747_c0_g1:928	si_a73	TRINITY_DN6747_c0_g1	917	937	928	-21.90	-16.30	0.744292237442922	6.5	3-6,935-932;8-21,930-917	1-2,937-936[UP5];7-7,931-931[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	AGUAAUGAAAAACGUUUUGCC&UUCAAAUUGUUUUUCAUUAUU	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6747_c0_g1_928_TPlot.pdf
TRINITY_DN6748_c0_g1:1319	si_a147	TRINITY_DN6748_c0_g1	1307	1329	1319	-30.40	-20.30	0.667763157894737	8	1-9,1329-1321;10-11,1319-1318;12-20,1316-1308	x-x,1320-1320[BULt];x-x,1317-1317[BULt];21-21,1307-1307[UP3]	.(((((((((.((.(((((((((&)))))))))-))-))))))))).	CGACUUUAGAUACAAACAGCGGU&AUCGUUGUU-GU-UUUAAGGUCA	4	0.999997117861142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN6748_c0_g1_1319_TPlot.pdf
TRINITY_DN6748_c0_g1:432	si_a452	TRINITY_DN6748_c0_g1	421	441	432	-23.00	-15.00	0.652173913043478	10	1-13,441-429	14-21,428-421[UP3]	........(((((((((((((&)))))))))))))........	AUAACCUCAACGACAAUUGUC&GAUAAUUGUUGUUAUAUAUAA	3	0.999999158860227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN6748_c0_g1_432_TPlot.pdf
TRINITY_DN6748_c0_g1:436	si_a448	TRINITY_DN6748_c0_g1	425	445	436	-25.50	-17.40	0.68235294117647	9.5	3-17,443-429	1-2,445-444[UP5];18-21,428-425[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCUCAACGACAAUUGUCUUUU&AUGAGAUAAUUGUUGUUAUAU	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN6748_c0_g1_436_TPlot.pdf
TRINITY_DN6748_c0_g1:437	si_a447	TRINITY_DN6748_c0_g1	426	446	437	-25.70	-17.40	0.67704280155642	10.5	4-18,443-429	1-3,446-444[UP5];19-21,428-426[UP3]	...(((((((((((((((...&...)))))))))))))))...	CUCAACGACAAUUGUCUUUUU&UAUGAGAUAAUUGUUGUUAUA	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN6748_c0_g1_437_TPlot.pdf
TRINITY_DN6748_c0_g1:438	si_a446	TRINITY_DN6748_c0_g1	427	447	438	-25.50	-17.40	0.68235294117647	11.5	5-19,443-429	1-4,447-444[UP5];20-21,428-427[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCAACGACAAUUGUCUUUUUU&AUAUGAGAUAAUUGUUGUUAU	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN6748_c0_g1_438_TPlot.pdf
TRINITY_DN6749_c0_g1:3755	si_a836	TRINITY_DN6749_c0_g1	3744	3764	3755	-24.10	-15.70	0.651452282157676	18.5	9-20,3756-3745	1-8,3764-3757[UP5];21-21,3744-3744[UP3]	.((((((((((((........&........)))))))))))).	GUGGCGGCUUCUGGCCUAAAA&AAAAAAAAUAGAAGUUGCUAA	3	0.999988544606788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN6749_c0_g1_3755_TPlot.pdf
TRINITY_DN674_c0_g1:4160	si_a399	TRINITY_DN674_c0_g1	4149	4170	4160	-22.60	-15.30	0.676991150442478	6.5	1-8,4170-4163;10-20,4160-4150	9-9,4162-4161[AILt];21-21,4149-4149[UP3]	.(((((((((((..((((((((&))))))))-.))))))))))).	CUAAACAAGACAUUUUUUAUAU&AUAUAGAA-UUGUUUUGUUUAU	3	0.9999995509213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN674_c0_g1_4160_TPlot.pdf
TRINITY_DN674_c0_g1:4161	si_a398	TRINITY_DN674_c0_g1	4150	4171	4161	-22.40	-16.40	0.732142857142857	5.5	1-9,4171-4163;11-21,4160-4150	10-10,4162-4161[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	UAAACAAGACAUUUUUUAUAUU&AAUAUAGAA-UUGUUUUGUUUA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN674_c0_g1_4161_TPlot.pdf
TRINITY_DN67507_c0_g1:276	si_a416	TRINITY_DN67507_c0_g1	265	286	276	-20.50	-13.68	0.667317073170732	11	1-9,286-278;15-21,271-265	10-14,277-272[AILt]	(((((((......(((((((((&)))))))))-.....)))))))	CCUAUAUGAGAAGUAAAUAUGA&UUAUAUUUA-AAUAAAUAUAGG	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN67507_c0_g1_276_TPlot.pdf
TRINITY_DN67513_c0_g1:57	si_a759	TRINITY_DN67513_c0_g1	47	66	57	-32.60	-22.80	0.699386503067485	10	1-7,66-60;9-11,58-56;14-20,54-48	8-8,59-59[SIL];12-13,55-55[AILq];21-21,47-47[UP3]	.(((((((.-(((.(((((((&))))))).)))..))))))).	GCAGUCGAC-GCCGGAGGGAG&CUCCUUUGGGUUUUUGAUUGA	1	0.070795066476425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN67513_c0_g1_57_TPlot.pdf
TRINITY_DN6751_c0_g1:462	si_a504	TRINITY_DN6751_c0_g1	449	471	462	-32.90	-21.40	0.650455927051672	9	1-13,471-459;14-17,456-453	x-x,458-457[BULt];18-21,452-449[UP3]	....((((..(((((((((((((&)))))))))))))--))))....	AAUCUCCAAAAGGAGGAUGAAGA&UUUUCGUCUUCCU--UGGAAUGU	4	0.999999994794446	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN6751_c0_g1_462_TPlot.pdf
TRINITY_DN6751_c0_g1:465	si_a501	TRINITY_DN6751_c0_g1	452	475	465	-33.50	-23.50	0.701492537313433	9	1-3,475-473;4-16,471-459;17-20,456-453	x-x,472-472[BULt];x-x,458-457[BULt];21-21,452-452[UP3]	.((((..(((((((((((((.(((&)))-)))))))))))))--)))).	CUCCAAAAGGAGGAUGAAGAUGCG&CGU-UUUUCGUCUUCCU--UGGAA	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN6751_c0_g1_465_TPlot.pdf
TRINITY_DN6751_c0_g1:553	si_a43	TRINITY_DN6751_c0_g1	541	562	553	-42.30	-28.40	0.671394799054373	6.5	1-13,562-550;15-19,547-543	14-14,549-548[AILt];20-21,542-541[UP3]	..(((((..(((((((((((((&)))))))))))))-.)))))..	AGGACUUGAUGGACCUAUCGGU&ACCGGUAGGUCUA-GGAGUCGA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN6751_c0_g1_553_TPlot.pdf
TRINITY_DN6751_c0_g1:554	si_a42	TRINITY_DN6751_c0_g1	542	563	554	-43.30	-28.80	0.665127020785219	6	2-14,562-550;16-20,547-543	1-1,563-563[UP5];15-15,549-548[AILt];21-21,542-542[UP3]	.(((((..(((((((((((((.&.)))))))))))))-.))))).	GGACUUGAUGGACCUAUCGGUG&GACCGGUAGGUCUA-GGAGUCG	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a42_TRINITY_DN6751_c0_g1_554_TPlot.pdf
TRINITY_DN6751_c0_g1:555	si_a41	TRINITY_DN6751_c0_g1	543	564	555	-42.50	-28.20	0.663529411764706	7	3-15,562-550;17-21,547-543	1-2,564-563[UP5];16-16,549-548[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	GACUUGAUGGACCUAUCGGUGC&AGACCGGUAGGUCUA-GGAGUC	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a41_TRINITY_DN6751_c0_g1_555_TPlot.pdf
TRINITY_DN6751_c0_g1:560	si_a36	TRINITY_DN6751_c0_g1	549	571	560	-37.80	-25.18	0.666137566137566	11.5	1-5,571-567;8-20,562-550	6-7,566-563[AILt];21-21,549-549[UP3]	.(((((((((((((....(((((&)))))--..))))))))))))).	AUGGACCUAUCGGUGCCGUAGGA&UUCUA--AGACCGGUAGGUCUAG	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a36_TRINITY_DN6751_c0_g1_560_TPlot.pdf
TRINITY_DN67528_c0_g1:32	si_a70	TRINITY_DN67528_c0_g1	15	41	32	-23.90	-16.70	0.698744769874477	10	2-16,40-26;17-21,19-15	1-1,41-41[UP5];x-x,25-20[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	AGUGAUAAAACAAGACAGUUUGAAGGU&UCUUUCAAAUUGUUUU------UCAUU	3	0.999995751731662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN67528_c0_g1_32_TPlot.pdf
TRINITY_DN67528_c0_g1:97	si_s266	TRINITY_DN67528_c0_g1	86	106	97	-26.40	-17.60	0.666666666666667	9.5	5-21,102-86	1-4,106-103[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGUGUUGGUUUUUUUGGCGAA&UUACUCAAAAAAAUCGACAUA	0	0.0247045727541928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s266_TRINITY_DN67528_c0_g1_97_TPlot.pdf
TRINITY_DN67543_c0_g1:491	si_a445	TRINITY_DN67543_c0_g1	480	501	491	-27.30	-18.20	0.666666666666667	8.5	1-9,501-493;12-19,489-482	10-11,492-490[AILt];20-21,481-480[UP3]	..((((((((...(((((((((&)))))))))-..))))))))..	UCAUAACAAUACUUCUCAUAUC&GAUAUGAGA-UAAUUGUUGUUA	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN67543_c0_g1_491_TPlot.pdf
TRINITY_DN6755_c0_g1:1484	si_s7	TRINITY_DN6755_c0_g1	1472	1493	1484	-21.70	-16.00	0.737327188940092	7.5	3-13,1491-1481;14-20,1479-1473	1-2,1493-1492[UP5];x-x,1480-1480[BULt];21-21,1472-1472[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	CUAUAGUAUGUGAUAAGUGACA&UAUUACUUAUUAU-UACUAUAU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN6755_c0_g1_1484_TPlot.pdf
TRINITY_DN6755_c0_g1:1521	si_s490	TRINITY_DN6755_c0_g1	1510	1537	1521	-17.80	-12.20	0.685393258426966	14	1-9,1537-1529;10-21,1521-1510	x-x,1528-1522[BULt]	((((((((((((.......(((((((((&)))))))))-------))))))))))))	UUUUGUUUAUAUUAUAGUUUUAAAUAAA&UUUAUUUAA-------AUAUAAACAAAA	3	0.997062604531715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN6755_c0_g1_1521_TPlot.pdf
TRINITY_DN6756_c0_g1:709	si_s899	TRINITY_DN6756_c0_g1	697	719	709	-28.30	-19.80	0.699646643109541	8	1-7,719-713;8-15,711-704;16-18,702-700	x-x,712-712[BULt];x-x,703-703[BULt];19-21,699-697[UP3]	...(((.((((((((.(((((((&)))))))-))))))))-)))...	AAAUGAUAAUUGAGGCAGAGAGC&GCUUUCU-CUUCAAUU-UCAAUU	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN6756_c0_g1_709_TPlot.pdf
TRINITY_DN67579_c0_g1:446	si_a789	TRINITY_DN67579_c0_g1	431	455	446	-24.80	-16.26	0.655645161290323	7.5	1-13,455-443;16-20,436-432	14-15,442-437[AILt];21-21,431-431[UP3]	.(((((......(((((((((((((&)))))))))))))----..))))).	UUUGGGCAAUUUAUAGAAAAAUAGA&UCUAUUUUUCUAU----UUUCCAAU	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN67579_c0_g1_446_TPlot.pdf
TRINITY_DN67579_c0_g1:447	si_a788	TRINITY_DN67579_c0_g1	432	456	447	-24.80	-16.36	0.659677419354839	7.5	2-14,455-443;17-21,436-432	1-1,456-456[UP5];15-16,442-437[AILt]	(((((......(((((((((((((.&.)))))))))))))----..)))))	UUGGGCAAUUUAUAGAAAAAUAGAU&UUCUAUUUUUCUAU----UUUCCAA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN67579_c0_g1_447_TPlot.pdf
TRINITY_DN6758_c0_g1:1494	si_a839	TRINITY_DN6758_c0_g1	1483	1504	1494	-26.50	-18.00	0.679245283018868	8	2-6,1503-1499;8-20,1496-1484	1-1,1504-1504[UP5];7-7,1498-1497[AILt];21-21,1483-1483[UP3]	.(((((((((((((..(((((.&.)))))-.))))))))))))).	UGGUUGGCAAUUUCGAAUUUUC&AAAAAU-AGAAGUUGCUAACUU	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN6758_c0_g1_1494_TPlot.pdf
TRINITY_DN6758_c0_g1:279	si_s898	TRINITY_DN6758_c0_g1	268	289	279	-30.70	-21.50	0.700325732899023	7	2-8,288-282;9-19,280-270	1-1,289-289[UP5];x-x,281-281[BULt];20-21,269-268[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	GAUGAAAUUGAAGUAGAAGGUG&GGCUUUCU-CUUCAAUUUCAAU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN6758_c0_g1_279_TPlot.pdf
TRINITY_DN6758_c0_g1:282	si_s896	TRINITY_DN6758_c0_g1	270	291	282	-31.60	-21.30	0.674050632911392	9	4-10,288-282;11-21,280-270	1-3,291-289[UP5];x-x,281-281[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UGAAAUUGAAGUAGAAGGUGAA&UAGGCUUUCU-CUUCAAUUUCA	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN6758_c0_g1_282_TPlot.pdf
TRINITY_DN6758_c0_g1:289	si_s807	TRINITY_DN6758_c0_g1	277	298	289	-28.90	-19.10	0.660899653979239	7	1-7,298-292;9-17,290-282;18-20,280-278	8-8,291-291[SIL];x-x,281-281[BULt];21-21,277-277[UP3]	.(((.(((((((((.(((((((&))))))).)))))))))-))).	GAAGUAGAAGGUGAAGGAGAUG&UAUCUUCGUUACCUUUU-CUUA	4	0.999999999978531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6758_c0_g1_289_TPlot.pdf
TRINITY_DN6758_c0_g1:305	si_s64	TRINITY_DN6758_c0_g1	289	314	305	-24.10	-16.10	0.66804979253112	17	4-12,311-303;13-21,297-289	1-3,314-312[UP5];x-x,302-298[BULt]	(((((((((.....(((((((((...&...)))))))))-----)))))))))	GAAGGAGAUGUGGAAGAAGUUGCAGG&UUAGCAACUUCU-----AUUUUUUUU	4	0.999999999947844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6758_c0_g1_305_TPlot.pdf
TRINITY_DN6758_c0_g1:324	si_s89	TRINITY_DN6758_c0_g1	312	333	324	-35.30	-24.50	0.694050991501416	7.5	3-15,331-319;16-20,317-313	1-2,333-332[UP5];x-x,318-318[BULt];21-21,312-312[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	AGGAGCGGAAGAAGAGGAAGAA&CCUUUCUUCUUCUUC-GCUUCG	3	0.999999958800647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6758_c0_g1_324_TPlot.pdf
TRINITY_DN67596_c0_g1:622	si_a461	TRINITY_DN67596_c0_g1	610	631	622	-21.50	-14.10	0.655813953488372	6	1-14,631-618;16-19,615-612	15-15,617-616[AILt];20-21,611-610[UP3]	..((((..((((((((((((((&))))))))))))))-.))))..	AUUUAUUUUGUUGUAUAUAACA&UGUUAUAUAUAAUA-UGUAAUU	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN67596_c0_g1_622_TPlot.pdf
TRINITY_DN67596_c0_g1:626	si_a457	TRINITY_DN67596_c0_g1	615	635	626	-23.50	-17.50	0.74468085106383	7	3-18,633-618	1-2,635-634[UP5];19-21,617-615[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUUGUUGUAUAUAACAACUU&UUGUUGUUAUAUAUAAUAUGU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN67596_c0_g1_626_TPlot.pdf
TRINITY_DN67596_c0_g1:627	si_a456	TRINITY_DN67596_c0_g1	616	636	627	-22.80	-17.50	0.767543859649123	8	4-19,633-618	1-3,636-634[UP5];20-21,617-616[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUUGUUGUAUAUAACAACUUG&AUUGUUGUUAUAUAUAAUAUG	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN67596_c0_g1_627_TPlot.pdf
TRINITY_DN675_c1_g1:846	si_a448	TRINITY_DN675_c1_g1	835	855	846	-25.50	-17.20	0.674509803921569	6	1-2,855-854;4-4,852-852;6-21,850-835	3-3,853-853[SIL];5-5,851-851[SIL]	((((((((((((((((.(.((&)).).))))))))))))))))	AUGUAAUAACAGUUAUGUGAU&AUGAGAUAAUUGUUGUUAUAU	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN675_c1_g1_846_TPlot.pdf
TRINITY_DN6762_c0_g3:179	si_s74	TRINITY_DN6762_c0_g3	168	188	179	-25.00	-17.40	0.696	9	1-5,188-184;7-17,182-172	6-6,183-183[SIL];18-21,171-168[UP3]	....(((((((((((.(((((&))))).)))))))))))....	UGACGGAAAGGAAAAUGAUGG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6762_c0_g3_179_TPlot.pdf
TRINITY_DN6762_c0_g3:20	si_a794	TRINITY_DN6762_c0_g3	9	29	20	-28.60	-20.60	0.72027972027972	9.5	4-10,26-20;12-21,18-9	1-3,29-27[UP5];11-11,19-19[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UUUGGAUUGGCGAAUGGACAU&UUUUCUAUUUUCCAAUCCGAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN6762_c0_g3_20_TPlot.pdf
TRINITY_DN6762_c1_g1:1552	si_a142	TRINITY_DN6762_c1_g1	1541	1561	1552	-23.50	-17.60	0.748936170212766	8	4-20,1558-1542	1-3,1561-1559[UP5];21-21,1541-1541[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AUAGAAUAACAAUGAUUAUUU&AAUUAAUCGUUGUUGUUUUAA	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6762_c1_g1_1552_TPlot.pdf
TRINITY_DN6765_c0_g1:2148	si_s376	TRINITY_DN6765_c0_g1	2136	2156	2148	-42.50	-29.10	0.684705882352941	10	4-5,2153-2152;7-14,2151-2144;15-21,2142-2136	1-3,2156-2154[UP5];6-6,x-x[BULq];x-x,2143-2143[BULt]	(((((((.((((((((-((...&...)).))))))))-)))))))	UGAGGCGCGGCGCGCG-GCCUU&AUCGCUCGCGUGUC-CGCCUUA	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN6765_c0_g1_2148_TPlot.pdf
TRINITY_DN6768_c0_g1:1671	si_a310	TRINITY_DN6768_c0_g1	1660	1680	1671	-33.70	-22.10	0.655786350148368	8.5	3-12,1678-1669;14-21,1667-1660	1-2,1680-1679[UP5];13-13,1668-1668[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GUCAUGGAAAGAUUCGAGUCA&UCGCUUGGAUUUAUCCAUGAU	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN6768_c0_g1_1671_TPlot.pdf
TRINITY_DN6768_c0_g1:3963	si_s787	TRINITY_DN6768_c0_g1	3952	3972	3963	-26.20	-18.10	0.690839694656489	11	6-12,3967-3961;14-21,3959-3952	1-5,3972-3968[UP5];13-13,3960-3960[SIL]	((((((((.(((((((.....&.....))))))).))))))))	GAAAUGCGUGCUUGUUCUUCA&UAUAAAACAAGCUCGUAUUUU	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN6768_c0_g1_3963_TPlot.pdf
TRINITY_DN6768_c0_g1:4299	si_a668	TRINITY_DN6768_c0_g1	4288	4307	4299	-33.20	-22.48	0.67710843373494	6.5	1-3,4307-4305;5-13,4304-4296;17-21,4292-4288	4-4,x-x[BULq];14-16,4295-4293[SIL]	(((((...(((((((((-(((&))).)))))))))...)))))	GUGGAGUUGGAAUCGAU-GGC&GCCUAUUGAUUCCUUAUUCAC	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN6768_c0_g1_4299_TPlot.pdf
TRINITY_DN6768_c0_g1:4662	si_a635	TRINITY_DN6768_c0_g1	4651	4671	4662	-26.10	-17.80	0.681992337164751	8	1-14,4671-4658;17-20,4655-4652	15-16,4657-4656[SIL];21-21,4651-4651[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	CUUGCGAGAAGAAGUUGGCAU&AUGUCGAUUUUUUUGAGUAAU	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN6768_c0_g1_4662_TPlot.pdf
TRINITY_DN6768_c0_g1:4663	si_a634	TRINITY_DN6768_c0_g1	4652	4672	4663	-26.40	-17.70	0.670454545454545	8	2-15,4671-4658;18-21,4655-4652	1-1,4672-4672[UP5];16-17,4657-4656[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	UUGCGAGAAGAAGUUGGCAUC&UAUGUCGAUUUUUUUGAGUAA	4	0.999999969278308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN6768_c0_g1_4663_TPlot.pdf
TRINITY_DN6768_c0_g1:5053	si_a508	TRINITY_DN6768_c0_g1	5044	5062	5053	-36.30	-24.60	0.677685950413223	6	1-14,5062-5049;16-16,5047-5047;19-21,5046-5044	15-15,5048-5048[SIL];17-18,x-x[BULq]	(((--(.((((((((((((((&)))))))))))))).)..)))	CCU--CCUUCCGAGGAGGGCG&CGUCUUCCUUGGAAUGUAAGG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN6768_c0_g1_5053_TPlot.pdf
TRINITY_DN6768_c0_g1:5054	si_a507	TRINITY_DN6768_c0_g1	5043	5063	5054	-34.90	-24.90	0.713467048710602	9	1-15,5063-5049	16-21,5048-5043[UP3]	......(((((((((((((((&)))))))))))))))......	UCCUCCUUCCGAGGAGGGCGA&UCGUCUUCCUUGGAAUGUAAG	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN6768_c0_g1_5054_TPlot.pdf
TRINITY_DN6768_c0_g1:5076	si_a497	TRINITY_DN6768_c0_g1	5053	5085	5076	-32.00	-23.50	0.734375	28.5	2-10,5084-5076;11-21,5063-5053	1-1,5085-5085[UP5];x-x,5075-5064[BULt]	(((((((((((............(((((((((.&.)))))))))------------)))))))))))	GAGGAGGGCGACGCAUCUUCGCGGAAGCGACAA&AUGUCGUUUU------------UCGUCUUCCUU	4	0.99947656798631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6768_c0_g1_5076_TPlot.pdf
TRINITY_DN6768_c0_g1:5078	si_a495	TRINITY_DN6768_c0_g1	5055	5087	5078	-31.90	-21.00	0.658307210031348	32	4-12,5084-5076;13-21,5063-5055	1-3,5087-5085[UP5];x-x,5075-5064[BULt]	(((((((((............(((((((((...&...)))))))))------------)))))))))	GGAGGGCGACGCAUCUUCGCGGAAGCGACAACU&AUAUGUCGUUUU------------UCGUCUUCC	3	0.999999999962595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN6768_c0_g1_5078_TPlot.pdf
TRINITY_DN67697_c0_g1:118	si_s776	TRINITY_DN67697_c0_g1	106	127	118	-25.10	-16.90	0.673306772908366	8	2-12,126-116;13-19,114-108	1-1,127-127[UP5];x-x,115-115[BULt];20-21,107-106[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	CAGUUUUAUAAGUGAUAGUGAC&AUUACUAUUGCU-AUAAAACAA	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN67697_c0_g1_118_TPlot.pdf
TRINITY_DN6770_c0_g1:111	si_s772	TRINITY_DN6770_c0_g1	100	120	111	-23.20	-15.60	0.672413793103448	10.5	4-16,117-105	1-3,120-118[UP5];17-21,104-100[UP3]	.....(((((((((((((...&...))))))))))))).....	CUAUGAGCGAUAGUAAUUCAU&AUUAAUUACUAUUGCUAUAAA	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN6770_c0_g1_111_TPlot.pdf
TRINITY_DN6771_c0_g1:1078	si_s88	TRINITY_DN6771_c0_g1	1067	1088	1078	-34.80	-23.70	0.681034482758621	7.5	1-6,1088-1083;7-14,1081-1074;16-19,1072-1069	x-x,1082-1082[BULt];15-15,1073-1073[SIL];20-21,1068-1067[UP3]	..((((.((((((((.((((((&))))))-)))))))).))))..	UCGGCGCAGAGGAAGAAGAGGA&UCCUUU-CUUCUUCUUCGCUUC	2	0.999999863454647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6771_c0_g1_1078_TPlot.pdf
TRINITY_DN6771_c0_g1:1079	si_s87	TRINITY_DN6771_c0_g1	1068	1089	1079	-32.90	-23.80	0.723404255319149	7.5	2-7,1088-1083;8-15,1081-1074;17-20,1072-1069	1-1,1089-1089[UP5];x-x,1082-1082[BULt];16-16,1073-1073[SIL];21-21,1068-1068[UP3]	.((((.((((((((.((((((.&.))))))-)))))))).)))).	CGGCGCAGAGGAAGAAGAGGAC&UUCCUUU-CUUCUUCUUCGCUU	2	0.999874865257008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6771_c0_g1_1079_TPlot.pdf
TRINITY_DN6771_c0_g1:1080	si_s86	TRINITY_DN6771_c0_g1	1069	1090	1080	-32.90	-23.80	0.723404255319149	8	3-8,1088-1083;9-16,1081-1074;18-21,1072-1069	1-2,1090-1089[UP5];x-x,1082-1082[BULt];17-17,1073-1073[SIL]	((((.((((((((.((((((..&..))))))-)))))))).))))	GGCGCAGAGGAAGAAGAGGACG&UUUCCUUU-CUUCUUCUUCGCU	2	0.999822692898121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6771_c0_g1_1080_TPlot.pdf
TRINITY_DN6771_c0_g1:1081	si_s85	TRINITY_DN6771_c0_g1	1070	1091	1081	-33.80	-22.60	0.668639053254438	9.5	4-9,1088-1083;10-17,1081-1074;19-21,1072-1070	1-3,1091-1089[UP5];x-x,1082-1082[BULt];18-18,1073-1073[SIL]	(((.((((((((.((((((...&...))))))-)))))))).)))	GCGCAGAGGAAGAAGAGGACGA&CUUUCCUUU-CUUCUUCUUCGC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN6771_c0_g1_1081_TPlot.pdf
TRINITY_DN6771_c0_g1:1092	si_a771	TRINITY_DN6771_c0_g1	1080	1101	1092	-29.40	-20.20	0.687074829931973	6	1-7,1101-1095;9-12,1093-1090;15-21,1086-1080	8-8,1094-1094[SIL];13-14,1089-1087[AILt]	(((((((...((((.(((((((&))))))).))))-..)))))))	AGAAGAGGACGAAUGAAUCAAA&UUUGAUUGAUUC-AACUCUUCU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN6771_c0_g1_1092_TPlot.pdf
TRINITY_DN6773_c0_g1:1552	si_s806	TRINITY_DN6773_c0_g1	1541	1562	1552	-28.60	-18.80	0.657342657342657	10	2-7,1561-1556;9-20,1553-1542	1-1,1562-1562[UP5];8-8,1555-1554[AILt];21-21,1541-1541[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	UGGAGAAGGUAAUUAGAGAUGC&UUAUCUU-CGUUACCUUUUCUU	4	0.999999999999794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6773_c0_g1_1552_TPlot.pdf
TRINITY_DN6773_c1_g2:147	si_a409	TRINITY_DN6773_c1_g2	136	157	147	-19.50	-14.50	0.743589743589744	5	2-7,156-151;8-21,149-136	1-1,157-157[UP5];x-x,150-150[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UUGUUUAGAUGUAAUACAAAAA&GUUUUGU-UUAUAUUUAAAUAA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6773_c1_g2_147_TPlot.pdf
TRINITY_DN67740_c0_g1:24	si_s491	TRINITY_DN67740_c0_g1	13	33	24	-19.50	-14.10	0.723076923076923	13	8-21,26-13	1-7,33-27[UP5]	((((((((((((((.......&.......))))))))))))))	GUUUUGUUUAUAUUAAUGUUU&UUAUUUAAAUAUAAACAAAAC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN67740_c0_g1_24_TPlot.pdf
TRINITY_DN6775_c0_g1:4137	si_s68	TRINITY_DN6775_c0_g1	4126	4145	4137	-23.10	-16.00	0.692640692640693	4.5	1-7,4145-4139;9-11,4138-4136;13-21,4134-4126	8-8,x-x[BULq];12-12,4135-4135[SIL]	(((((((((.(((-(((((((&))))))).))).)))))))))	AAAGAGAAAUAAU-GAAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999999968951046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6775_c0_g1_4137_TPlot.pdf
TRINITY_DN6775_c0_g1:4138	si_s67	TRINITY_DN6775_c0_g1	4127	4146	4138	-25.60	-18.80	0.734375	3.5	1-8,4146-4139;10-12,4138-4136;14-21,4134-4127	9-9,x-x[BULq];13-13,4135-4135[SIL]	((((((((.(((-((((((((&)))))))).))).))))))))	AAGAGAAAUAAU-GAAGUUGC&GCAACUUCUAUUUUUUUUCUU	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6775_c0_g1_4138_TPlot.pdf
TRINITY_DN6775_c0_g1:4139	si_s66	TRINITY_DN6775_c0_g1	4128	4147	4139	-26.30	-18.10	0.688212927756654	4.5	2-9,4146-4139;11-13,4138-4136;15-21,4134-4128	1-1,4147-4147[UP5];10-10,x-x[BULq];14-14,4135-4135[SIL]	(((((((.(((-((((((((.&.)))))))).))).)))))))	AGAGAAAUAAU-GAAGUUGCC&AGCAACUUCUAUUUUUUUUCU	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN6775_c0_g1_4139_TPlot.pdf
TRINITY_DN6775_c0_g1:4140	si_s64	TRINITY_DN6775_c0_g1	4127	4149	4140	-24.10	-16.70	0.692946058091286	10	4-11,4146-4139;12-21,4136-4127	1-3,4149-4147[UP5];x-x,4138-4137[BULt]	((((((((((..((((((((...&...))))))))--))))))))))	AAGAGAAAUAAUGAAGUUGCCAC&UUAGCAACUUC--UAUUUUUUUU	2	0.999639564237272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6775_c0_g1_4140_TPlot.pdf
TRINITY_DN6775_c0_g1:4175	si_a471	TRINITY_DN6775_c0_g1	4165	4184	4175	-21.10	-14.10	0.66824644549763	8.5	3-13,4182-4172;15-19,4171-4167	1-2,4184-4183[UP5];14-14,x-x[BULq];20-21,4166-4165[UP3]	..(((((-(((((((((((..&..))))))))))).)))))..	AGAUGAC-AUGAUUGCAUAAA&AAUAUGUAAUUAUUGUUAUAU	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN6775_c0_g1_4175_TPlot.pdf
TRINITY_DN67778_c0_g1:103	si_s602	TRINITY_DN67778_c0_g1	92	112	103	-28.10	-19.60	0.697508896797153	6	2-10,111-103;12-20,101-93	1-1,112-112[UP5];11-11,102-102[SIL];21-21,92-92[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	GUUGGAAAAGCUUUGCUUGGU&UCCAAGCGAAUCUUUUUUAAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN67778_c0_g1_103_TPlot.pdf
TRINITY_DN67821_c0_g1:348	si_s419	TRINITY_DN67821_c0_g1	336	356	348	-25.60	-18.50	0.72265625	4.5	1-7,356-350;9-14,349-344;15-21,342-336	8-8,x-x[BULq];x-x,343-343[BULt]	(((((((.((((((-(((((((&))))))).))))))-)))))))	UGUUGUUGAUAUAG-GUAUGUC&GACAUAUUCUAUAU-AACAAUA	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s419_TRINITY_DN67821_c0_g1_348_TPlot.pdf
TRINITY_DN67827_c0_g1:332	si_s82	TRINITY_DN67827_c0_g1	321	341	332	-28.90	-22.50	0.778546712802768	8	1-4,341-338;6-20,336-322	5-5,337-337[SIL];21-21,321-321[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CGGAAGGGGAGAGGGACGAGG&UUUCUUUCCUUUCUUCUUCUU	0	0.238268833304299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN67827_c0_g1_332_TPlot.pdf
TRINITY_DN6782_c0_g1:1180	si_s77	TRINITY_DN6782_c0_g1	1167	1189	1180	-25.50	-17.40	0.68235294117647	5.5	1-13,1189-1177;15-21,1173-1167	14-14,1176-1174[AILt]	(((((((...(((((((((((((&)))))))))))))--.)))))))	GAAGGAAUACGAAAGAGAAAGAA&UUUUUUUUCUUUC--CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6782_c0_g1_1180_TPlot.pdf
TRINITY_DN6782_c0_g1:1183	si_s80	TRINITY_DN6782_c0_g1	1167	1192	1183	-28.20	-18.40	0.652482269503546	8.5	2-10,1191-1183;11-15,1181-1177;16-21,1172-1167	1-1,1192-1192[UP5];x-x,1182-1182[BULt];x-x,1176-1173[BULt]	((((((....(((((.(((((((((.&.)))))))))-)))))----))))))	GAAGGAAUACGAAAGAGAAAGAAGAU&UUUUUCUUUC-CUUUC----UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6782_c0_g1_1183_TPlot.pdf
TRINITY_DN6782_c0_g1:1188	si_s75	TRINITY_DN6782_c0_g1	1176	1200	1188	-24.00	-15.90	0.6625	11	1-6,1200-1195;7-15,1191-1183;16-20,1181-1177	x-x,1194-1192[BULt];x-x,1182-1182[BULt];21-21,1176-1176[UP3]	.(((((.(((((((((...((((((&))))))---)))))))))-))))).	CGAAAGAGAAAGAAGAUUAAGAGUA&UAUUUU---UUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6782_c0_g1_1188_TPlot.pdf
TRINITY_DN6782_c0_g1:580	si_s607	TRINITY_DN6782_c0_g1	569	588	580	-27.60	-18.80	0.681159420289855	7.5	1-4,588-585;6-7,584-583;9-19,581-571	5-5,x-x[BULq];8-8,582-582[SIL];20-21,570-569[UP3]	..(((((((((((.((-((((&)))).)).)))))))))))..	AGGGAUUUGAAAAUGG-UCGC&GCGAAUCUUUUUUAAAUCCAA	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN6782_c0_g1_580_TPlot.pdf
TRINITY_DN6782_c0_g1:581	si_s606	TRINITY_DN6782_c0_g1	570	589	581	-28.20	-18.90	0.670212765957447	7.5	2-5,588-585;7-8,584-583;10-20,581-571	1-1,589-589[UP5];6-6,x-x[BULq];9-9,582-582[SIL];21-21,570-570[UP3]	.(((((((((((.((-((((.&.)))).)).))))))))))).	GGGAUUUGAAAAUGG-UCGCA&AGCGAAUCUUUUUUAAAUCCA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN6782_c0_g1_581_TPlot.pdf
TRINITY_DN6782_c0_g1:582	si_s605	TRINITY_DN6782_c0_g1	571	590	582	-27.50	-18.50	0.672727272727273	8.5	3-6,588-585;8-9,584-583;11-21,581-571	1-2,590-589[UP5];7-7,x-x[BULq];10-10,582-582[SIL]	(((((((((((.((-((((..&..)))).)).)))))))))))	GGAUUUGAAAAUGG-UCGCAA&AAGCGAAUCUUUUUUAAAUCC	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN6782_c0_g1_582_TPlot.pdf
TRINITY_DN67848_c0_g1:691	si_a352	TRINITY_DN67848_c0_g1	676	700	691	-22.50	-17.10	0.76	9	3-14,698-687;15-21,682-676	1-2,700-699[UP5];x-x,686-683[BULt]	(((((((....((((((((((((..&..))))))))))))----)))))))	GAUCAGAGUCAGUAGAGUUAAUACG&AAUAUUAAUUCUAU----UUUGAUC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN67848_c0_g1_691_TPlot.pdf
TRINITY_DN6784_c0_g1:571	si_a20	TRINITY_DN6784_c0_g1	559	580	571	-26.70	-17.60	0.659176029962547	8	1-5,580-576;7-16,574-565;18-20,562-560	6-6,575-575[SIL];17-17,564-563[AILt];21-21,559-559[UP3]	.(((..((((((((((.(((((&))))).))))))))))-.))).	GAGAUUCUGGAGAUAACUGGGC&GCCUAUUUAUUUUUAG-UUCUA	3	0.99999996276671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN6784_c0_g1_571_TPlot.pdf
TRINITY_DN6786_c0_g1:1863	si_a599	TRINITY_DN6786_c0_g1	1852	1872	1863	-30.40	-20.80	0.684210526315789	11.5	4-5,1869-1868;7-19,1866-1854	1-3,1872-1870[UP5];6-6,1867-1867[SIL];20-21,1853-1852[UP3]	..(((((((((((((.((...&...)).)))))))))))))..	UCGGAGUUGCGAGAGGUCACC&ACAGAAUUUUCGCAAUUCCAA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a599_TRINITY_DN6786_c0_g1_1863_TPlot.pdf
TRINITY_DN6786_c0_g1:2494	si_s352	TRINITY_DN6786_c0_g1	2484	2503	2494	-27.20	-19.00	0.698529411764706	4.5	1-12,2503-2492;14-15,2490-2489;17-20,2488-2485	13-13,2491-2491[SIL];16-16,x-x[BULq];21-21,2484-2484[UP3]	.((((-((.((((((((((((&)))))))))))).)).)))).	GUCAG-CUUUUUCUUUGUCUC&GAGAUAAAGAAAUAGAUUGAA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN6786_c0_g1_2494_TPlot.pdf
TRINITY_DN6786_c0_g1:2495	si_s351	TRINITY_DN6786_c0_g1	2485	2504	2495	-29.50	-19.90	0.674576271186441	4	1-13,2504-2492;15-16,2490-2489;18-21,2488-2485	14-14,2491-2491[SIL];17-17,x-x[BULq]	((((-((.(((((((((((((&))))))))))))).)).))))	UCAG-CUUUUUCUUUGUCUCU&GGAGAUAAAGAAAUAGAUUGA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s351_TRINITY_DN6786_c0_g1_2495_TPlot.pdf
TRINITY_DN6786_c0_g1:2496	si_s350	TRINITY_DN6786_c0_g1	2486	2505	2496	-30.90	-20.40	0.660194174757282	4.5	1-14,2505-2492;16-17,2490-2489;19-21,2488-2486	15-15,2491-2491[SIL];18-18,x-x[BULq]	(((-((.((((((((((((((&)))))))))))))).)).)))	CAG-CUUUUUCUUUGUCUCUC&GGGAGAUAAAGAAAUAGAUUG	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s350_TRINITY_DN6786_c0_g1_2496_TPlot.pdf
TRINITY_DN6786_c0_g1:2497	si_s349	TRINITY_DN6786_c0_g1	2486	2506	2497	-31.60	-20.90	0.661392405063291	6.5	1-15,2506-2492;17-18,2490-2489	16-16,2491-2491[SIL];19-21,2488-2486[UP3]	...((.(((((((((((((((&))))))))))))))).))...	CAGCUUUUUCUUUGUCUCUCU&GGGGAGAUAAAGAAAUAGAUU	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s349_TRINITY_DN6786_c0_g1_2497_TPlot.pdf
TRINITY_DN6786_c0_g1:2499	si_s347	TRINITY_DN6786_c0_g1	2488	2508	2499	-33.70	-24.50	0.72700296735905	5	1-17,2508-2492;19-20,2490-2489	18-18,2491-2491[SIL];21-21,2488-2488[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	GCUUUUUCUUUGUCUCUCUGU&ACGGGGAGAUAAAGAAAUAGA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s347_TRINITY_DN6786_c0_g1_2499_TPlot.pdf
TRINITY_DN6786_c0_g1:2500	si_s346	TRINITY_DN6786_c0_g1	2489	2509	2500	-34.40	-24.40	0.709302325581395	5	2-18,2508-2492;20-21,2490-2489	1-1,2509-2509[UP5];19-19,2491-2491[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	CUUUUUCUUUGUCUCUCUGUC&CACGGGGAGAUAAAGAAAUAG	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s346_TRINITY_DN6786_c0_g1_2500_TPlot.pdf
TRINITY_DN6786_c0_g1:464	si_s88	TRINITY_DN6786_c0_g1	453	473	464	-34.80	-23.40	0.672413793103448	6	1-14,473-460;17-20,457-454	15-16,459-458[SIL];21-21,453-453[UP3]	.((((..((((((((((((((&))))))))))))))..)))).	AAAGUAUGGAGGAGGAAAGGA&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999999896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6786_c0_g1_464_TPlot.pdf
TRINITY_DN6786_c0_g1:465	si_s87	TRINITY_DN6786_c0_g1	454	474	465	-32.90	-24.30	0.738601823708207	5	1-15,474-460;18-21,457-454	16-17,459-458[SIL]	((((..(((((((((((((((&)))))))))))))))..))))	AAGUAUGGAGGAGGAAAGGAA&UUCCUUUCUUCUUCUUCGCUU	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6786_c0_g1_465_TPlot.pdf
TRINITY_DN67901_c0_g1:150	si_a512	TRINITY_DN67901_c0_g1	139	159	150	-37.80	-24.80	0.656084656084656	7.5	3-14,157-146;16-21,144-139	1-2,159-158[UP5];15-15,145-145[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	UCUGCCAUAUAUUUCAGGGUG&UUCCUUGGAAUGUAAGGCGGA	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN67901_c0_g1_150_TPlot.pdf
TRINITY_DN6790_c0_g1:1356	si_s77	TRINITY_DN6790_c0_g1	1345	1365	1356	-25.50	-16.60	0.650980392156863	7	2-11,1364-1355;14-21,1352-1345	1-1,1365-1365[UP5];12-13,1354-1353[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	GGAGAAGGUCAAGAAGAAAGU&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6790_c0_g1_1356_TPlot.pdf
TRINITY_DN6790_c0_g1:1649	si_s485	TRINITY_DN6790_c0_g1	1637	1658	1649	-18.10	-13.00	0.718232044198895	9	1-11,1658-1648;13-19,1645-1639	12-12,1647-1646[AILt];20-21,1638-1637[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	AAUAUAUUUUUGAUAAGUAUGG&CUAUAUUUAUU-UAAAUAUAAA	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN6790_c0_g1_1649_TPlot.pdf
TRINITY_DN6790_c0_g1:1650	si_s484	TRINITY_DN6790_c0_g1	1638	1659	1650	-20.50	-13.40	0.653658536585366	8	2-12,1658-1648;14-20,1645-1639	1-1,1659-1659[UP5];13-13,1647-1646[AILt];21-21,1638-1638[UP3]	.(((((((..(((((((((((.&.)))))))))))-.))))))).	AUAUAUUUUUGAUAAGUAUGGA&CCUAUAUUUAUU-UAAAUAUAA	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN6790_c0_g1_1650_TPlot.pdf
TRINITY_DN6793_c0_g1:3477	si_a125	TRINITY_DN6793_c0_g1	3466	3486	3477	-25.00	-17.36	0.6944	8.5	1-11,3486-3476;16-21,3471-3466	12-15,3475-3472[SIL]	((((((....(((((((((((&)))))))))))....))))))	GAUUACGGCAGCUAUGGAGCA&UGUUUUAUAGCAAUAGUAAUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN6793_c0_g1_3477_TPlot.pdf
TRINITY_DN6793_c0_g1:8652	si_a20	TRINITY_DN6793_c0_g1	8641	8662	8652	-26.70	-20.90	0.782771535580524	9.5	1-7,8662-8656;10-21,8652-8641	8-9,8655-8653[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	UAGAGCUGGAGAAGCAAUGGGC&GCCUAUU-UAUUUUUAGUUCUA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN6793_c0_g1_8652_TPlot.pdf
TRINITY_DN6793_c0_g1:8654	si_a18	TRINITY_DN6793_c0_g1	8643	8664	8654	-26.30	-18.50	0.703422053231939	12	3-9,8662-8656;12-21,8652-8643	1-2,8664-8663[UP5];10-11,8655-8653[AILt]	((((((((((...(((((((..&..)))))))-..))))))))))	GAGCUGGAGAAGCAAUGGGCAA&AAGCCUAUU-UAUUUUUAGUUC	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN6793_c0_g1_8654_TPlot.pdf
TRINITY_DN6794_c0_g1:1929	si_a613	TRINITY_DN6794_c0_g1	1919	1938	1929	-35.30	-23.50	0.6657223796034	6	1-13,1938-1926;16-19,1924-1921	14-15,1925-1925[AILq];20-21,1920-1919[UP3]	..((((.-(((((((((((((&)))))))))))))..))))..	UGACGCG-AGUUGGUUGGAAU&AUUCCAAUCGACUAGGCGUAU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN6794_c0_g1_1929_TPlot.pdf
TRINITY_DN6794_c0_g1:2026	si_a331	TRINITY_DN6794_c0_g1	2014	2035	2026	-30.60	-19.90	0.650326797385621	13	5-12,2031-2024;14-21,2021-2014	1-4,2035-2032[UP5];13-13,2023-2022[AILt]	((((((((..((((((((....&....))))))))-.))))))))	UUUGGGGCUUGGGAAUAGCUUG&UUUUUUAUUCCU-UGUCCCGAA	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN6794_c0_g1_2026_TPlot.pdf
TRINITY_DN67953_c0_g1:101	si_s603	TRINITY_DN67953_c0_g1	90	113	101	-27.20	-17.84	0.655882352941176	11	1-9,113-105;11-18,100-93	10-10,104-101[AILt];19-21,92-90[UP3]	...((((((((....(((((((((&)))))))))---.))))))))...	CCGUAAAAAAGCUUCUUCGCUUGG&CCAAGCGAA---UCUUUUUUAAAU	2	0.97359694244819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN67953_c0_g1_101_TPlot.pdf
TRINITY_DN67983_c0_g1:236	si_a314	TRINITY_DN67983_c0_g1	225	247	236	-27.10	-18.40	0.678966789667897	9.5	1-4,247-244;6-21,240-225	5-5,243-241[AILt]	((((((((((((((((...((((&))))--.))))))))))))))))	AGAAGUUAUGGAUAGACUACCGA&UUGG--AUUUAUCCAUGAUUUUU	4	0.999933568506076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN67983_c0_g1_236_TPlot.pdf
TRINITY_DN67989_c0_g1:344	si_a351	TRINITY_DN67989_c0_g1	333	353	344	-20.50	-15.30	0.746341463414634	12	7-21,347-333	1-6,353-348[UP5]	(((((((((((((((......&......)))))))))))))))	AUCAAGGUAGAAUUACCUCGU&AAAUAUUAAUUCUAUUUUGAU	0	0.0676449523395386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN67989_c0_g1_344_TPlot.pdf
TRINITY_DN67989_c0_g1:345	si_a350	TRINITY_DN67989_c0_g1	334	354	345	-20.30	-14.10	0.694581280788177	14	8-21,347-334	1-7,354-348[UP5]	((((((((((((((.......&.......))))))))))))))	UCAAGGUAGAAUUACCUCGUG&AAAAUAUUAAUUCUAUUUUGA	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN67989_c0_g1_345_TPlot.pdf
TRINITY_DN6798_c0_g1:1515	si_a142	TRINITY_DN6798_c0_g1	1504	1524	1515	-23.50	-15.90	0.676595744680851	10	3-17,1522-1508	1-2,1524-1523[UP5];18-21,1507-1504[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAACAACAACAAUGGUUAGGA&AAUUAAUCGUUGUUGUUUUAA	2	0.999999391987963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6798_c0_g1_1515_TPlot.pdf
TRINITY_DN679_c0_g1:156	si_s810	TRINITY_DN679_c0_g1	145	165	156	-27.90	-18.90	0.67741935483871	8	2-6,164-160;8-17,158-149	1-1,165-165[UP5];7-7,159-159[SIL];18-21,148-145[UP3]	....((((((((((.(((((.&.))))).))))))))))....	GAAAAAGAAAAGGUCGCGAAA&CUUCGUUACCUUUUCUUAAUA	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN679_c0_g1_156_TPlot.pdf
TRINITY_DN679_c0_g1:5068	si_a23	TRINITY_DN679_c0_g1	5057	5077	5068	-22.80	-15.00	0.657894736842105	8.5	3-17,5075-5061	1-2,5077-5076[UP5];18-21,5060-5057[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAUAAGAGCUAAAAAUAAGGA&UAUUUAUUUUUAGUUCUAAGA	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN679_c0_g1_5068_TPlot.pdf
TRINITY_DN679_c0_g1:65	si_s69	TRINITY_DN679_c0_g1	54	75	65	-23.40	-16.30	0.696581196581197	9.5	3-7,73-69;9-21,66-54	1-2,75-74[UP5];8-8,68-67[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GAAAGAAGAAAAGAAAGAGGAA&AACUUCU-AUUUUUUUUCUUUC	2	0.999999999995545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN679_c0_g1_65_TPlot.pdf
TRINITY_DN679_c0_g1:67	si_s79	TRINITY_DN679_c0_g1	56	76	67	-26.20	-20.00	0.763358778625954	5	2-11,75-66;13-21,64-56	1-1,76-76[UP5];12-12,65-65[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	AAGAAGAAAAGAAAGAGGAAG&UUUUUUCUUUCCUUUCUUCUU	3	0.999999999638915	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN679_c0_g1_67_TPlot.pdf
TRINITY_DN679_c0_g1:68	si_s78	TRINITY_DN679_c0_g1	57	77	68	-26.20	-20.80	0.793893129770992	4	1-12,77-66;14-21,64-57	13-13,65-65[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGAAGAAAAGAAAGAGGAAGA&UUUUUUUCUUUCCUUUCUUCU	2	0.999449689418886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN679_c0_g1_68_TPlot.pdf
TRINITY_DN679_c0_g1:69	si_s77	TRINITY_DN679_c0_g1	58	78	69	-25.50	-20.40	0.8	4	1-13,78-66;15-21,64-58	14-14,65-65[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAAGAAAAGAAAGAGGAAGAA&UUUUUUUUCUUUCCUUUCUUC	4	0.999994646216814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN679_c0_g1_69_TPlot.pdf
TRINITY_DN679_c0_g1:70	si_s81	TRINITY_DN679_c0_g1	57	80	70	-28.90	-21.30	0.737024221453287	5	1-9,80-72;10-15,70-65;16-21,62-57	x-x,71-71[BULt];x-x,64-63[BULt]	((((((..((((((.(((((((((&)))))))))-))))))--))))))	AGAAGAAAAGAAAGAGGAAGAAAA&UUUUCUUUC-CUUUCU--UCUUCU	4	0.999999999987955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN679_c0_g1_70_TPlot.pdf
TRINITY_DN679_c0_g1:71	si_s75	TRINITY_DN679_c0_g1	60	80	71	-24.00	-16.30	0.679166666666667	7	3-15,78-66;17-21,64-60	1-2,80-79[UP5];16-16,65-65[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAAAAGAAAGAGGAAGAAAA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN679_c0_g1_71_TPlot.pdf
TRINITY_DN679_c0_g1:72	si_s80	TRINITY_DN679_c0_g1	58	81	72	-28.20	-20.70	0.734042553191489	5	1-10,81-72;11-16,70-65;17-21,62-58	x-x,71-71[BULt];x-x,64-63[BULt]	(((((..((((((.((((((((((&))))))))))-))))))--)))))	GAAGAAAAGAAAGAGGAAGAAAAA&UUUUUCUUUC-CUUUCU--UCUUC	2	0.999999939195905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN679_c0_g1_72_TPlot.pdf
TRINITY_DN679_c1_g1:2370	si_a401	TRINITY_DN679_c1_g1	2359	2379	2370	-22.60	-15.20	0.672566371681416	8.5	1-4,2379-2376;7-13,2373-2367;15-21,2365-2359	5-6,2375-2374[SIL];14-14,2366-2366[SIL]	(((((((.(((((((..((((&))))..))))))).)))))))	GUAUAAAGAAGACGAAGCUGU&AUAGAAUUGUUUUGUUUAUAU	4	0.999999991631285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN679_c1_g1_2370_TPlot.pdf
TRINITY_DN679_c1_g1:2564	si_a759	TRINITY_DN679_c1_g1	2553	2573	2564	-32.60	-22.40	0.687116564417178	6.5	1-1,2573-2573;3-15,2571-2559;17-20,2557-2554	2-2,2572-2572[SIL];16-16,2558-2558[SIL];21-21,2553-2553[UP3]	.((((.(((((((((((((.(&).))))))))))))).)))).	CCGAUGAAAAGCCUAAAGGCG&CUCCUUUGGGUUUUUGAUUGA	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN679_c1_g1_2564_TPlot.pdf
TRINITY_DN679_c1_g1:2877	si_s69	TRINITY_DN679_c1_g1	2866	2890	2877	-23.40	-16.00	0.683760683760684	12	2-7,2889-2884;8-20,2879-2867	1-1,2890-2890[UP5];x-x,2883-2880[BULt];21-21,2866-2866[UP3]	.(((((((((((((....((((((.&.))))))----))))))))))))).	AGAAGAAGAAGAAUCUGAAGAAGUA&AACUUCU----AUUUUUUUUCUUUC	2	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN679_c1_g1_2877_TPlot.pdf
TRINITY_DN679_c1_g1:2878	si_s68	TRINITY_DN679_c1_g1	2867	2891	2878	-23.10	-15.80	0.683982683982684	13	3-8,2889-2884;9-21,2879-2867	1-2,2891-2890[UP5];x-x,2883-2880[BULt]	(((((((((((((....((((((..&..))))))----)))))))))))))	GAAGAAGAAGAAUCUGAAGAAGUAU&CAACUUCU----AUUUUUUUUCUUU	2	0.999999999576142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN679_c1_g1_2878_TPlot.pdf
TRINITY_DN679_c1_g1:2894	si_s94	TRINITY_DN679_c1_g1	2876	2903	2894	-35.50	-23.80	0.670422535211268	17.5	1-11,2903-2893;12-20,2885-2877	x-x,2892-2886[BULt];21-21,2876-2876[UP3]	.(((((((((.......(((((((((((&)))))))))))-------))))))))).	GAAUCUGAAGAAGUAUCCGAAGAGGAGG&CUUCUUCUUCG-------CUUCGGAUUG	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN679_c1_g1_2894_TPlot.pdf
TRINITY_DN679_c1_g1:2895	si_s93	TRINITY_DN679_c1_g1	2877	2904	2895	-34.80	-23.30	0.669540229885058	17.5	2-12,2903-2893;13-21,2885-2877	1-1,2904-2904[UP5];x-x,2892-2886[BULt]	(((((((((.......(((((((((((.&.)))))))))))-------)))))))))	AAUCUGAAGAAGUAUCCGAAGAGGAGGU&UCUUCUUCUUCG-------CUUCGGAUU	3	0.99999999945869	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN679_c1_g1_2895_TPlot.pdf
TRINITY_DN679_c1_g1:2912	si_s80	TRINITY_DN679_c1_g1	2894	2922	2912	-28.20	-19.00	0.673758865248227	18	1-9,2922-2914;10-12,2912-2910;13-21,2902-2894	x-x,2913-2913[BULt];x-x,2909-2903[BULt]	(((((((((.......(((.(((((((((&)))))))))-)))-------)))))))))	GAAGAGGAGGUUCUUCAGGAAAAGAAAGA&UUUUUCUUU-CCU-------UUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN679_c1_g1_2912_TPlot.pdf
TRINITY_DN679_c1_g1:2920	si_s77	TRINITY_DN679_c1_g1	2909	2929	2920	-25.50	-16.80	0.658823529411765	5.5	1-13,2929-2917;15-20,2915-2910	14-14,2916-2916[SIL];21-21,2909-2909[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	CAGGAAAAGAAAGAAGAGGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN679_c1_g1_2920_TPlot.pdf
TRINITY_DN679_c1_g1:2921	si_s76	TRINITY_DN679_c1_g1	2910	2930	2921	-23.60	-16.80	0.711864406779661	5.5	2-14,2929-2917;16-21,2915-2910	1-1,2930-2930[UP5];15-15,2916-2916[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AGGAAAAGAAAGAAGAGGAAA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN679_c1_g1_2921_TPlot.pdf
TRINITY_DN679_c1_g1:2922	si_s75	TRINITY_DN679_c1_g1	2911	2931	2922	-24.00	-16.10	0.670833333333333	7.5	3-15,2929-2917;17-21,2915-2911	1-2,2931-2930[UP5];16-16,2916-2916[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GGAAAAGAAAGAAGAGGAAAC&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN679_c1_g1_2922_TPlot.pdf
TRINITY_DN679_c1_g1:2930	si_s806	TRINITY_DN679_c1_g1	2919	2943	2930	-28.60	-19.64	0.686713286713287	15.5	1-9,2943-2935;13-21,2927-2919	10-12,2934-2928[AILt]	(((((((((.......(((((((((&)))))))))----...)))))))))	AAGAAGAGGAAACAGUCGAAGAUGA&UUAUCUUCG----UUACCUUUUCUU	2	0.999939956558842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN679_c1_g1_2930_TPlot.pdf
TRINITY_DN679_c1_g1:2935	si_s805	TRINITY_DN679_c1_g1	2920	2944	2935	-28.60	-19.64	0.686713286713287	14.5	1-10,2944-2935;14-21,2927-2920	11-13,2934-2928[AILt]	((((((((.......((((((((((&))))))))))----...))))))))	AGAAGAGGAAACAGUCGAAGAUGAA&UUUAUCUUCG----UUACCUUUUCU	3	0.999998927568074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN679_c1_g1_2935_TPlot.pdf
TRINITY_DN679_c1_g1:2936	si_s804	TRINITY_DN679_c1_g1	2921	2945	2936	-27.90	-19.24	0.689605734767025	13.5	1-11,2945-2935;15-21,2927-2921	12-14,2934-2928[AILt]	(((((((.......(((((((((((&)))))))))))----...)))))))	GAAGAGGAAACAGUCGAAGAUGAAA&UUUUAUCUUCG----UUACCUUUUC	2	0.999657069035875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN679_c1_g1_2936_TPlot.pdf
TRINITY_DN679_c1_g1:295	si_s306	TRINITY_DN679_c1_g1	283	305	295	-32.30	-21.10	0.653250773993808	12	4-9,302-297;11-17,294-288;18-21,286-283	1-3,305-303[UP5];10-10,296-295[AILt];x-x,287-287[BULt]	((((.(((((((..((((((...&...))))))-.)))))))-))))	GGAGUGGCAGAGGAUUUCGCUCC&AUUGCGAAA-AUUCUGUC-CUUC	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN679_c1_g1_295_TPlot.pdf
TRINITY_DN679_c1_g1:403	si_s528	TRINITY_DN679_c1_g1	392	412	403	-29.40	-19.36	0.658503401360544	5.5	1-13,412-400;18-21,395-392	14-17,399-396[SIL]	((((....(((((((((((((&)))))))))))))....))))	CGGAAAUCGAAUGGUUUCGAA&UUCGAAAUCAUUUUUGAUCCG	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN679_c1_g1_403_TPlot.pdf
TRINITY_DN679_c1_g1:554	si_a67	TRINITY_DN679_c1_g1	543	563	554	-27.20	-19.08	0.701470588235294	8	1-10,563-554;14-21,550-543	11-13,553-551[SIL]	((((((((...((((((((((&))))))))))...))))))))	GAAGAACACCAUGGGAGAAGU&GCUUCUUUCAAAUUGUUUUUC	4	0.999982273507496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN679_c1_g1_554_TPlot.pdf
TRINITY_DN67_c0_g1:4334	si_a78	TRINITY_DN67_c0_g1	4323	4343	4334	-22.30	-14.70	0.659192825112108	9	1-16,4343-4328	17-21,4327-4323[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUAAAAAUAGUGAGAGAUAAU&AUUGUUUUUCAUUAUUAAGAA	4	0.999999992757229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN67_c0_g1_4334_TPlot.pdf
TRINITY_DN67_c0_g1:4337	si_a75	TRINITY_DN67_c0_g1	4326	4346	4337	-21.30	-15.00	0.704225352112676	10.5	4-19,4343-4328	1-3,4346-4344[UP5];20-21,4327-4326[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAAUAGUGAGAGAUAAUGAA&CAAAUUGUUUUUCAUUAUUAA	3	0.99999616069199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN67_c0_g1_4337_TPlot.pdf
TRINITY_DN67_c0_g1:4338	si_a74	TRINITY_DN67_c0_g1	4327	4347	4338	-22.20	-15.00	0.675675675675676	11.5	5-20,4343-4328	1-4,4347-4344[UP5];21-21,4327-4327[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAUAGUGAGAGAUAAUGAAA&UCAAAUUGUUUUUCAUUAUUA	3	0.999999939475036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN67_c0_g1_4338_TPlot.pdf
TRINITY_DN67_c2_g1:1088	si_a785	TRINITY_DN67_c2_g1	1071	1097	1088	-25.90	-19.90	0.768339768339768	7.5	1-13,1097-1085;14-21,1078-1071	x-x,1084-1079[BULt]	((((((((......(((((((((((((&)))))))))))))------))))))))	GAAAAUGGCUUGCAAGAAAUAGAAGAG&CUCUUCUAUUUUU------CUAUUUUC	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN67_c2_g1_1088_TPlot.pdf
TRINITY_DN67_c2_g1:157	si_s21	TRINITY_DN67_c2_g1	146	166	157	-27.40	-18.60	0.678832116788321	12.5	7-20,160-147	1-6,166-161[UP5];21-21,146-146[UP3]	.((((((((((((((......&......)))))))))))))).	AUUGGUUGCAAUCAAAAAAAG&ACUAUAUUGAUUGCAACUAAA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN67_c2_g1_157_TPlot.pdf
TRINITY_DN67_c2_g1:1645	si_s809	TRINITY_DN67_c2_g1	1633	1654	1645	-28.50	-18.60	0.652631578947368	9	1-8,1654-1647;10-13,1645-1642;14-18,1640-1636	9-9,1646-1646[SIL];x-x,1641-1641[BULt];19-21,1635-1633[UP3]	...(((((.((((.((((((((&)))))))).))))-)))))...	UGGGAGGACAGGGCGACGAAGA&UCUUCGUUACCUU-UUCUUAAU	3	0.999999999991805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN67_c2_g1_1645_TPlot.pdf
TRINITY_DN67_c2_g1:1646	si_s808	TRINITY_DN67_c2_g1	1634	1655	1646	-28.60	-18.60	0.65034965034965	8.5	2-9,1654-1647;11-14,1645-1642;15-19,1640-1636	1-1,1655-1655[UP5];10-10,1646-1646[SIL];x-x,1641-1641[BULt];20-21,1635-1634[UP3]	..(((((.((((.((((((((.&.)))))))).))))-)))))..	GGGAGGACAGGGCGACGAAGAA&AUCUUCGUUACCUU-UUCUUAA	2	0.999999993198556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN67_c2_g1_1646_TPlot.pdf
TRINITY_DN67_c2_g1:2033	si_a405	TRINITY_DN67_c2_g1	2022	2042	2033	-19.80	-14.70	0.742424242424242	11	4-19,2039-2024	1-3,2042-2040[UP5];20-21,2023-2022[UP3]	..((((((((((((((((...&...))))))))))))))))..	ACAAGUGUAGACAGAAUAGAA&AAUUGUUUUGUUUAUAUUUAA	4	0.999998349317261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN67_c2_g1_2033_TPlot.pdf
TRINITY_DN68017_c0_g1:343	si_s603	TRINITY_DN68017_c0_g1	332	352	343	-27.20	-19.50	0.716911764705882	8.5	1-6,352-347;9-17,344-336	7-8,346-345[SIL];18-21,335-332[UP3]	....(((((((((..((((((&))))))..)))))))))....	GAAGGAAAAAGAUGAGCUUGG&CCAAGCGAAUCUUUUUUAAAU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN68017_c0_g1_343_TPlot.pdf
TRINITY_DN68040_c0_g1:497	si_s693	TRINITY_DN68040_c0_g1	486	506	497	-23.90	-20.30	0.849372384937239	4	1-11,506-496;13-21,494-486	12-12,495-495[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	UAAUAAAUCAGCUAAUUGAAC&GUUUAAUUAGUCGAUUUAUUA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN68040_c0_g1_497_TPlot.pdf
TRINITY_DN6805_c0_g1:1065	si_a25	TRINITY_DN6805_c0_g1	1054	1074	1065	-26.50	-17.70	0.667924528301887	16.5	8-20,1067-1055	1-7,1074-1068[UP5];21-21,1054-1054[UP3]	.(((((((((((((.......&.......))))))))))))).	AGUCUUGGAGCUGACAGCUGG&UUUAUUUUUAGUUCUAAGACC	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN6805_c0_g1_1065_TPlot.pdf
TRINITY_DN68075_c0_g1:121	si_a727	TRINITY_DN68075_c0_g1	110	131	121	-39.70	-26.70	0.672544080604534	10	3-8,129-124;9-10,122-121;12-20,119-111	1-2,131-130[UP5];x-x,123-123[BULt];11-11,120-120[SIL];21-21,110-110[UP3]	.(((((((((.((.((((((..&..))))))-)).))))))))).	UGGGUGGAGGCGCGCCGAGUCA&UUACUCGG-GCAUCUUUACCCC	1	0.0173419731837832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN68075_c0_g1_121_TPlot.pdf
TRINITY_DN6808_c0_g3:106	si_s77	TRINITY_DN6808_c0_g3	95	115	106	-25.50	-17.60	0.690196078431373	4	1-13,115-103;15-20,101-96	14-14,102-102[SIL];21-21,95-95[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AAAGAAACGAAAGAAGAAGAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6808_c0_g3_106_TPlot.pdf
TRINITY_DN680_c0_g1:907	si_a766	TRINITY_DN680_c0_g1	896	916	907	-30.50	-21.50	0.704918032786885	7.5	1-18,916-899	19-21,898-896[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUCUGGAUCAGUCAAGAAUUC&GGGUUUUUGAUUGAUUCAACU	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a766_TRINITY_DN680_c0_g1_907_TPlot.pdf
TRINITY_DN680_c0_g1:910	si_a763	TRINITY_DN680_c0_g1	899	919	910	-28.80	-21.40	0.743055555555555	9	4-21,916-899	1-3,919-917[UP5]	((((((((((((((((((...&...))))))))))))))))))	UGGAUCAGUCAAGAAUUCUUG&UUUGGGUUUUUGAUUGAUUCA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN680_c0_g1_910_TPlot.pdf
TRINITY_DN680_c1_g1:905	si_s513	TRINITY_DN680_c1_g1	893	914	905	-24.90	-16.60	0.666666666666667	8	1-11,914-904;14-19,900-895	12-13,903-901[AILt];20-21,894-893[UP3]	..((((((...(((((((((((&)))))))))))-..))))))..	UACGAAUUCAUGAAUAUAGAGU&AUUCUAUAUUC-UUAAUUCGAA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s513_TRINITY_DN680_c1_g1_905_TPlot.pdf
TRINITY_DN680_c1_g1:906	si_s512	TRINITY_DN680_c1_g1	894	915	906	-24.80	-16.90	0.681451612903226	7	2-12,914-904;15-20,900-895	1-1,915-915[UP5];13-14,903-901[AILt];21-21,894-894[UP3]	.((((((...(((((((((((.&.)))))))))))-..)))))).	ACGAAUUCAUGAAUAUAGAGUG&AAUUCUAUAUUC-UUAAUUCGA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN680_c1_g1_906_TPlot.pdf
TRINITY_DN68108_c0_g1:167	si_a637	TRINITY_DN68108_c0_g1	156	176	167	-25.80	-17.00	0.65891472868217	8	1-8,176-169;10-16,167-161	9-9,168-168[SIL];17-21,160-156[UP3]	.....(((((((.((((((((&)))))))).))))))).....	GGUACGCUCAAACAAAUCGAU&GUCGAUUUUUUUGAGUAAUAU	3	0.999999999914219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN68108_c0_g1_167_TPlot.pdf
TRINITY_DN68108_c0_g1:171	si_a633	TRINITY_DN68108_c0_g1	160	180	171	-26.40	-18.80	0.712121212121212	6.5	3-12,178-169;14-20,167-161	1-2,180-179[UP5];13-13,168-168[SIL];21-21,160-160[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CGCUCAAACAAAUCGAUAUUC&UUAUGUCGAUUUUUUUGAGUA	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN68108_c0_g1_171_TPlot.pdf
TRINITY_DN68108_c0_g1:172	si_a632	TRINITY_DN68108_c0_g1	161	181	172	-26.10	-18.60	0.71264367816092	7.5	4-13,178-169;15-21,167-161	1-3,181-179[UP5];14-14,168-168[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GCUCAAACAAAUCGAUAUUCA&AUUAUGUCGAUUUUUUUGAGU	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN68108_c0_g1_172_TPlot.pdf
TRINITY_DN68108_c0_g1:173	si_a631	TRINITY_DN68108_c0_g1	162	182	173	-25.70	-17.10	0.665369649805448	9	5-14,178-169;16-21,167-162	1-4,182-179[UP5];15-15,168-168[SIL]	((((((.((((((((((....&....)))))))))).))))))	CUCAAACAAAUCGAUAUUCAA&UAUUAUGUCGAUUUUUUUGAG	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN68108_c0_g1_173_TPlot.pdf
TRINITY_DN6811_c0_g1:175	si_a13	TRINITY_DN6811_c0_g1	164	184	175	-26.80	-17.80	0.664179104477612	6.5	1-8,184-177;10-18,175-167	9-9,176-176[SIL];19-21,166-164[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AGCAAUGAAUGGUCUUUCUCU&AGAGAAAGCCUAUUUAUUUUU	4	0.99570190244754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a13_TRINITY_DN6811_c0_g1_175_TPlot.pdf
TRINITY_DN6811_c0_g2:1569	si_s432	TRINITY_DN6811_c0_g2	1558	1578	1569	-21.30	-14.80	0.694835680751174	8	1-14,1578-1565	15-21,1564-1558[UP3]	.......((((((((((((((&)))))))))))))).......	CAAACGUUGUAAUUGUUGUUA&UAACAAUAAUUACAUAUUAUA	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN6811_c0_g2_1569_TPlot.pdf
TRINITY_DN6811_c0_g2:221	si_a436	TRINITY_DN6811_c0_g2	209	231	221	-33.80	-22.00	0.650887573964497	9.5	1-6,231-226;8-15,223-216;16-19,214-211	7-7,225-224[AILt];x-x,215-215[BULt];20-21,210-209[UP3]	..((((.((((((((..((((((&))))))-.))))))))-))))..	ACAUCUGCGUGUCCAUGUGGAUC&GAUCCG-UUGGAUAUG-AGAUAA	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a436_TRINITY_DN6811_c0_g2_221_TPlot.pdf
TRINITY_DN6811_c0_g2:227	si_a302	TRINITY_DN6811_c0_g2	216	236	227	-28.20	-19.00	0.673758865248227	9.5	3-12,234-225;14-18,223-219	1-2,236-235[UP5];13-13,224-224[SIL];19-21,218-216[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	CGUGUCCAUGUGGAUCUUUGU&AAAAAGAUUCGCUUGGAUUUA	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN6811_c0_g2_227_TPlot.pdf
TRINITY_DN6811_c0_g2:538	si_a667	TRINITY_DN6811_c0_g2	528	547	538	-32.10	-22.80	0.710280373831776	6	1-11,547-537;13-16,536-533;18-20,531-529	12-12,x-x[BULq];17-17,532-532[SIL];21-21,528-528[UP3]	.(((.((((-(((((((((((&))))))))))).)))).))).	GGAACAAGG-GUCGAUAGGCA&UGCCUAUUGAUUCCUUAUUCA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN6811_c0_g2_538_TPlot.pdf
TRINITY_DN6812_c1_g1:1157	si_a297	TRINITY_DN6812_c1_g1	1146	1166	1157	-27.20	-18.10	0.665441176470588	16	9-21,1158-1146	1-8,1166-1159[UP5]	(((((((((((((........&........)))))))))))))	UCGAGCGAAUCUUCUUCAAAC&AUUUAAAAAAGAUUCGCUUGG	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a297_TRINITY_DN6812_c1_g1_1157_TPlot.pdf
TRINITY_DN6812_c1_g1:2418	si_s79	TRINITY_DN6812_c1_g1	2407	2427	2418	-26.20	-17.60	0.67175572519084	15.5	7-19,2421-2409	1-6,2427-2422[UP5];20-21,2408-2407[UP3]	..(((((((((((((......&......)))))))))))))..	GCGGGGAGAGGGAAGUUGGCA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6812_c1_g1_2418_TPlot.pdf
TRINITY_DN6812_c1_g1:2421	si_s76	TRINITY_DN6812_c1_g1	2410	2435	2421	-23.60	-16.90	0.716101694915254	15	1-9,2435-2427;10-21,2421-2410	x-x,2426-2422[BULt]	((((((((((((.....(((((((((&)))))))))-----))))))))))))	GGGAGAGGGAAGUUGGCAAGAGGAAU&AUUUUUUUU-----CUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6812_c1_g1_2421_TPlot.pdf
TRINITY_DN6812_c1_g1:2427	si_s75	TRINITY_DN6812_c1_g1	2411	2436	2427	-24.00	-16.40	0.683333333333333	15.5	2-10,2435-2427;11-21,2421-2411	1-1,2436-2436[UP5];x-x,2426-2422[BULt]	(((((((((((.....(((((((((.&.)))))))))-----)))))))))))	GGAGAGGGAAGUUGGCAAGAGGAAUC&UAUUUUUUUU-----CUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6812_c1_g1_2427_TPlot.pdf
TRINITY_DN6812_c1_g1:2463	si_a498	TRINITY_DN6812_c1_g1	2452	2476	2463	-33.50	-22.28	0.665074626865672	15.5	1-8,2476-2469;10-18,2463-2455	9-9,2468-2464[AILt];19-21,2454-2452[UP3]	...(((((((((.....((((((((&))))))))----.)))))))))...	UCCGGAAGGCGAUGACCGAACGGCA&UGUCGUUU----UUCGUCUUCCUUG	2	0.999999941424372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN6812_c1_g1_2463_TPlot.pdf
TRINITY_DN6812_c1_g1:2464	si_a497	TRINITY_DN6812_c1_g1	2453	2477	2464	-32.00	-22.28	0.69625	15.5	2-9,2476-2469;11-19,2463-2455	1-1,2477-2477[UP5];10-10,2468-2464[AILt];20-21,2454-2453[UP3]	..(((((((((.....((((((((.&.))))))))----.)))))))))..	CCGGAAGGCGAUGACCGAACGGCAA&AUGUCGUUU----UUCGUCUUCCUU	2	0.999987329205299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6812_c1_g1_2464_TPlot.pdf
TRINITY_DN6812_c1_g1:2470	si_a495	TRINITY_DN6812_c1_g1	2455	2479	2470	-31.90	-21.98	0.689028213166144	17.5	4-11,2476-2469;13-21,2463-2455	1-3,2479-2477[UP5];12-12,2468-2464[AILt]	(((((((((.....((((((((...&...))))))))----.)))))))))	GGAAGGCGAUGACCGAACGGCAAGG&AUAUGUCGUUU----UUCGUCUUCC	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN6812_c1_g1_2470_TPlot.pdf
TRINITY_DN6812_c1_g1:2664	si_a114	TRINITY_DN6812_c1_g1	2653	2673	2664	-27.90	-18.20	0.652329749103943	13.5	6-14,2668-2660;16-20,2658-2654	1-5,2673-2669[UP5];15-15,2659-2659[SIL];21-21,2653-2653[UP3]	.(((((.(((((((((.....&.....))))))))).))))).	AUGUGACGCGAGCUCGGGAGC&AAAUACGAGCUUGUUUUAUAG	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN6812_c1_g1_2664_TPlot.pdf
TRINITY_DN6812_c1_g2:972	si_a113	TRINITY_DN6812_c1_g2	961	981	972	-26.20	-18.50	0.706106870229008	15.5	7-18,975-964	1-6,981-976[UP5];19-21,963-961[UP3]	...((((((((((((......&......))))))))))))...	CGAGAGACGAGCUCGGGAAGC&AAAAUACGAGCUUGUUUUAUA	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN6812_c1_g2_972_TPlot.pdf
TRINITY_DN6813_c1_g4:249	si_a284	TRINITY_DN6813_c1_g4	238	258	249	-28.30	-19.10	0.674911660777385	10	1-14,258-245	15-21,244-238[UP3]	.......((((((((((((((&)))))))))))))).......	AACGAUUUCCGAGCGGUUUUU&AAAGAUCGCUUGGAUUUAAAA	4	0.99953754326857	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN6813_c1_g4_249_TPlot.pdf
TRINITY_DN6815_c0_g1:839	si_a780	TRINITY_DN6815_c0_g1	827	848	839	-27.30	-17.80	0.652014652014652	8.5	1-12,848-837;13-14,835-834;17-20,831-828	x-x,836-836[BULt];15-16,833-832[SIL];21-21,827-827[UP3]	.((((..((.((((((((((((&))))))))))))-))..)))).	CAGAAUUGUAAGGGGAGUUGGA&UUCAACUCUUCU-AUUUUUCUA	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN6815_c0_g1_839_TPlot.pdf
TRINITY_DN6815_c0_g1:840	si_a779	TRINITY_DN6815_c0_g1	828	849	840	-27.00	-17.60	0.651851851851852	7.5	2-13,848-837;14-15,835-834;18-21,831-828	1-1,849-849[UP5];x-x,836-836[BULt];16-17,833-832[SIL]	((((..((.((((((((((((.&.))))))))))))-))..))))	AGAAUUGUAAGGGGAGUUGGAA&AUUCAACUCUUCU-AUUUUUCU	3	0.999999967686141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN6815_c0_g1_840_TPlot.pdf
TRINITY_DN6815_c0_g2:1725	si_s191	TRINITY_DN6815_c0_g2	1714	1734	1725	-26.60	-17.60	0.661654135338346	5.5	2-7,1733-1728;9-21,1726-1714	1-1,1734-1734[UP5];8-8,1727-1727[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UACAUUUCAAAAUUGUUGUUU&UAACGAUUAUUUUGGAAUGUA	2	0.985472190984285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN6815_c0_g2_1725_TPlot.pdf
TRINITY_DN6815_c0_g2:1735	si_s445	TRINITY_DN6815_c0_g2	1724	1744	1735	-21.10	-13.80	0.654028436018957	8	3-9,1742-1736;12-21,1733-1724	1-2,1744-1743[UP5];10-11,1735-1734[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	AAUUGUUGUUUAAUAUGAUUC&AUAUUAUAUAUAACAACAAUU	3	0.997696114694842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN6815_c0_g2_1735_TPlot.pdf
TRINITY_DN6815_c0_g2:2027	si_a780	TRINITY_DN6815_c0_g2	2015	2036	2027	-27.30	-17.80	0.652014652014652	8.5	1-12,2036-2025;13-14,2023-2022;17-20,2019-2016	x-x,2024-2024[BULt];15-16,2021-2020[SIL];21-21,2015-2015[UP3]	.((((..((.((((((((((((&))))))))))))-))..)))).	CAGAAUUGUAAGGGGAGUUGGA&UUCAACUCUUCU-AUUUUUCUA	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN6815_c0_g2_2027_TPlot.pdf
TRINITY_DN6815_c0_g2:2028	si_a779	TRINITY_DN6815_c0_g2	2016	2037	2028	-27.00	-17.60	0.651851851851852	7.5	2-13,2036-2025;14-15,2023-2022;18-21,2019-2016	1-1,2037-2037[UP5];x-x,2024-2024[BULt];16-17,2021-2020[SIL]	((((..((.((((((((((((.&.))))))))))))-))..))))	AGAAUUGUAAGGGGAGUUGGAA&AUUCAACUCUUCU-AUUUUUCU	2	0.99998434353007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN6815_c0_g2_2028_TPlot.pdf
TRINITY_DN68165_c0_g1:82	si_a27	TRINITY_DN68165_c0_g1	71	90	82	-30.30	-21.30	0.702970297029703	6	1-7,90-84;9-20,83-72	8-8,x-x[BULq];21-21,71-71[UP3]	.((((((((((((-(((((((&))))))).)))))))))))).	ACGGUUUUAGAGC-AAGAAUG&UAUUUUUAGUUCUAAGACCGG	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN68165_c0_g1_82_TPlot.pdf
TRINITY_DN68169_c0_g1:91	si_s549	TRINITY_DN68169_c0_g1	80	100	91	-20.50	-15.80	0.770731707317073	5.5	1-5,100-96;8-20,93-81	6-7,95-94[SIL];21-21,80-80[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	UGAUAUUAAUUCUAACUUGAU&AUCAAAAUAGAAUUAAUAUUU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN68169_c0_g1_91_TPlot.pdf
TRINITY_DN6816_c0_g2:197	si_a585	TRINITY_DN6816_c0_g2	187	206	197	-31.60	-21.30	0.674050632911392	6	2-14,205-193;16-18,192-190	1-1,206-206[UP5];15-15,x-x[BULq];19-21,189-187[UP3]	...(((-(((((((((((((.&.))))))))))))).)))...	UACCUG-CCUUUUUGUUACAC&UUGUAACAAGAAGGACAGAAU	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN6816_c0_g2_197_TPlot.pdf
TRINITY_DN68172_c0_g1:119	si_s559	TRINITY_DN68172_c0_g1	107	128	119	-27.80	-18.80	0.676258992805755	13.5	6-14,123-115;15-21,113-107	1-5,128-124[UP5];x-x,114-114[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	UUUGUCCUCGAGAGUGUGGGCU&AAUUAAUAUUUUCG-GGACAAG	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN68172_c0_g1_119_TPlot.pdf
TRINITY_DN6819_c0_g1:902	si_s434	TRINITY_DN6819_c0_g1	891	911	902	-21.50	-14.00	0.651162790697674	5.5	1-13,911-899;15-17,897-895	14-14,898-898[SIL];18-21,894-891[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UCAUUAAAGUGUAAUUAUUGU&ACAAUAAUUACAUAUUAUAUA	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN6819_c0_g1_902_TPlot.pdf
TRINITY_DN6819_c0_g1:903	si_s433	TRINITY_DN6819_c0_g1	892	912	903	-21.10	-15.20	0.720379146919431	4.5	1-14,912-899;16-18,897-895	15-15,898-898[SIL];19-21,894-892[UP3]	...(((.((((((((((((((&)))))))))))))).)))...	CAUUAAAGUGUAAUUAUUGUU&AACAAUAAUUACAUAUUAUAU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN6819_c0_g1_903_TPlot.pdf
TRINITY_DN6819_c0_g1:904	si_s432	TRINITY_DN6819_c0_g1	893	913	904	-21.30	-16.50	0.774647887323944	3.5	1-15,913-899;17-19,897-895	16-16,898-898[SIL];20-21,894-893[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	AUUAAAGUGUAAUUAUUGUUA&UAACAAUAAUUACAUAUUAUA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN6819_c0_g1_904_TPlot.pdf
TRINITY_DN6819_c0_g1:905	si_s431	TRINITY_DN6819_c0_g1	894	914	905	-21.10	-16.50	0.781990521327014	3.5	2-16,913-899;18-20,897-895	1-1,914-914[UP5];17-17,898-898[SIL];21-21,894-894[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UUAAAGUGUAAUUAUUGUUAA&AUAACAAUAAUUACAUAUUAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN6819_c0_g1_905_TPlot.pdf
TRINITY_DN6819_c0_g1:907	si_s429	TRINITY_DN6819_c0_g1	896	916	907	-21.10	-16.40	0.777251184834123	8.5	4-18,913-899	1-3,916-914[UP5];19-21,898-896[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAGUGUAAUUAUUGUUAAAA&AUAUAACAAUAAUUACAUAUU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN6819_c0_g1_907_TPlot.pdf
TRINITY_DN681_c0_g1:1384	si_s330	TRINITY_DN681_c0_g1	1373	1393	1384	-31.90	-21.60	0.677115987460815	5.5	3-15,1391-1379;17-20,1377-1374	1-2,1393-1392[UP5];16-16,1378-1378[SIL];21-21,1373-1373[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	GCGUGUAUUGUAUGUUUGUUG&UUACAAACAUACGAUUCACGG	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s330_TRINITY_DN681_c0_g1_1384_TPlot.pdf
TRINITY_DN681_c0_g1:1385	si_s329	TRINITY_DN681_c0_g1	1374	1394	1385	-31.20	-23.30	0.746794871794872	4.5	1-2,1394-1393;4-16,1391-1379;18-21,1377-1374	3-3,1392-1392[SIL];17-17,1378-1378[SIL]	((((.(((((((((((((.((&)).))))))))))))).))))	CGUGUAUUGUAUGUUUGUUGC&GUUACAAACAUACGAUUCACG	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s329_TRINITY_DN681_c0_g1_1385_TPlot.pdf
TRINITY_DN681_c0_g1:1386	si_s328	TRINITY_DN681_c0_g1	1375	1395	1386	-30.40	-21.70	0.713815789473684	4.5	1-3,1395-1393;5-17,1391-1379;19-21,1377-1375	4-4,1392-1392[SIL];18-18,1378-1378[SIL]	(((.(((((((((((((.(((&))).))))))))))))).)))	GUGUAUUGUAUGUUUGUUGCA&UGUUACAAACAUACGAUUCAC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s328_TRINITY_DN681_c0_g1_1386_TPlot.pdf
TRINITY_DN68200_c0_g1:447	si_s77	TRINITY_DN68200_c0_g1	436	456	447	-25.50	-23.40	0.917647058823529	5.5	1-3,456-454;5-21,452-436	4-4,453-453[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	GAAGAGAGGAAAGAAGGCGAA&UUUUUUUUCUUUCCUUUCUUC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN68200_c0_g1_447_TPlot.pdf
TRINITY_DN68200_c0_g1:448	si_s76	TRINITY_DN68200_c0_g1	437	457	448	-23.60	-20.10	0.851694915254237	6.5	2-4,456-454;6-21,452-437	1-1,457-457[UP5];5-5,453-453[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AAGAGAGGAAAGAAGGCGAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN68200_c0_g1_448_TPlot.pdf
TRINITY_DN68219_c0_g1:207	si_s69	TRINITY_DN68219_c0_g1	196	216	207	-23.40	-17.00	0.726495726495727	8	1-7,216-210;10-13,207-204;15-21,202-196	8-9,209-208[SIL];14-14,203-203[SIL]	(((((((.((((..(((((((&)))))))..)))).)))))))	GGAAGAAUGGAAUGAGAGGUU&AACUUCUAUUUUUUUUCUUUC	4	0.99999999999562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN68219_c0_g1_207_TPlot.pdf
TRINITY_DN68230_c0_g1:254	si_a814	TRINITY_DN68230_c0_g1	243	268	254	-32.90	-23.30	0.708206686930091	11.5	1-5,268-264;6-21,258-243	x-x,263-259[BULt]	((((((((((((((((.....(((((&)))))-----))))))))))))))))	UUUCUUUUCUUCUUCUGUAGUUUGCU&AGCGA-----AGAAGAAGAAAGGAAA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN68230_c0_g1_254_TPlot.pdf
TRINITY_DN6823_c0_g1:675	si_s70	TRINITY_DN6823_c0_g1	662	684	675	-25.80	-17.10	0.662790697674419	6	2-15,683-670;16-20,667-663	1-1,684-684[UP5];x-x,669-668[BULt];21-21,662-662[UP3]	.(((((..((((((((((((((.&.))))))))))))))--))))).	AGAGAGUCAGAAAAAAUGGAAGC&ACUUCUAUUUUUUUU--CUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6823_c0_g1_675_TPlot.pdf
TRINITY_DN6823_c0_g1:850	si_a73	TRINITY_DN6823_c0_g1	839	859	850	-21.90	-14.80	0.675799086757991	6	1-4,859-856;6-6,854-854;8-20,852-840	5-5,855-855[SIL];7-7,853-853[SIL];21-21,839-839[UP3]	.(((((((((((((.(.((((&)))).).))))))))))))).	UAUAGUGGAAAACAUUCUGAA&UUCAAAUUGUUUUUCAUUAUU	2	0.999997915335075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6823_c0_g1_850_TPlot.pdf
TRINITY_DN6823_c0_g1:854	si_a69	TRINITY_DN6823_c0_g1	843	863	854	-24.00	-17.80	0.741666666666667	6	1-8,863-856;10-10,854-854;12-21,852-843	9-9,855-855[SIL];11-11,853-853[SIL]	((((((((((.(.((((((((&)))))))).).))))))))))	GUGGAAAACAUUCUGAAGGAA&UUCUUUCAAAUUGUUUUUCAU	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN6823_c0_g1_854_TPlot.pdf
TRINITY_DN6824_c0_g1:1198	si_s776	TRINITY_DN6824_c0_g1	1187	1207	1198	-25.10	-17.30	0.689243027888446	7	1-16,1207-1192	17-21,1191-1187[UP3]	.....((((((((((((((((&)))))))))))))))).....	AACGGUUAUAGUAAUGGUAAU&AUUACUAUUGCUAUAAAACAA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN6824_c0_g1_1198_TPlot.pdf
TRINITY_DN6824_c0_g1:1203	si_s771	TRINITY_DN6824_c0_g1	1192	1212	1203	-25.20	-17.40	0.69047619047619	10.5	6-21,1207-1192	1-5,1212-1208[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAUAGUAAUGGUAAUGCCAA&GAUUAAUUACUAUUGCUAUAA	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN6824_c0_g1_1203_TPlot.pdf
TRINITY_DN6824_c0_g1:1388	si_a406	TRINITY_DN6824_c0_g1	1377	1397	1388	-19.80	-13.30	0.671717171717172	10.5	1-15,1397-1383	16-21,1382-1377[UP3]	......(((((((((((((((&)))))))))))))))......	UAAUUUUGUGAAUAAGACGAU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999996654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6824_c0_g1_1388_TPlot.pdf
TRINITY_DN6824_c0_g1:1421	si_s7	TRINITY_DN6824_c0_g1	1410	1430	1421	-21.70	-15.90	0.732718894009217	6.5	1-5,1430-1426;8-21,1423-1410	6-7,1425-1424[SIL]	((((((((((((((..(((((&)))))..))))))))))))))	AUAUGGUAAUGAUAUUUAGUA&UAUUACUUAUUAUUACUAUAU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN6824_c0_g1_1421_TPlot.pdf
TRINITY_DN6824_c0_g1:1423	si_s5	TRINITY_DN6824_c0_g1	1412	1432	1423	-21.70	-14.50	0.668202764976959	7	2-7,1431-1426;10-21,1423-1412	1-1,1432-1432[UP5];8-9,1425-1424[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	AUGGUAAUGAUAUUUAGUAUU&UAUAUUACUUAUUAUUACUAU	2	0.99882420723748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN6824_c0_g1_1423_TPlot.pdf
TRINITY_DN68260_c0_g1:85	si_a580	TRINITY_DN68260_c0_g1	74	93	85	-31.00	-20.60	0.664516129032258	9	4-8,90-86;10-20,85-75	1-3,93-91[UP5];9-9,x-x[BULq];21-21,74-74[UP3]	.(((((((((((-(((((...&...))))).))))))))))).	CUCCUUCUUGUU-CGAACCAC&UAUGUUUGUAACAAGAAGGAC	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a580_TRINITY_DN68260_c0_g1_85_TPlot.pdf
TRINITY_DN6826_c0_g1:1250	si_a303	TRINITY_DN6826_c0_g1	1238	1259	1250	-28.40	-19.10	0.672535211267606	9.5	2-10,1258-1250;11-16,1248-1243	1-1,1259-1259[UP5];x-x,1249-1249[BULt];17-21,1242-1238[UP3]	.....((((((.(((((((((.&.)))))))))-)))))).....	UCGUUUCCGGGACGAAUCUUUA&AAAAGAUUCG-CUUGGAUUUAU	4	0.999848305957908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN6826_c0_g1_1250_TPlot.pdf
TRINITY_DN6826_c0_g1:1252	si_a301	TRINITY_DN6826_c0_g1	1240	1261	1252	-27.80	-19.10	0.68705035971223	11	4-12,1258-1250;13-18,1248-1243	1-3,1261-1259[UP5];x-x,1249-1249[BULt];19-21,1242-1240[UP3]	...((((((.(((((((((...&...)))))))))-))))))...	GUUUCCGGGACGAAUCUUUAGU&AAAAAAGAUUCG-CUUGGAUUU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN6826_c0_g1_1252_TPlot.pdf
TRINITY_DN6826_c0_g1:1253	si_a300	TRINITY_DN6826_c0_g1	1241	1262	1253	-28.20	-19.10	0.677304964539007	11	5-13,1258-1250;14-19,1248-1243	1-4,1262-1259[UP5];x-x,1249-1249[BULt];20-21,1242-1241[UP3]	..((((((.(((((((((....&....)))))))))-))))))..	UUUCCGGGACGAAUCUUUAGUG&UAAAAAAGAUUCG-CUUGGAUU	2	0.960679084337681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN6826_c0_g1_1253_TPlot.pdf
TRINITY_DN6826_c0_g1:1254	si_a299	TRINITY_DN6826_c0_g1	1242	1263	1254	-28.30	-19.10	0.674911660777385	12	6-14,1258-1250;15-20,1248-1243	1-5,1263-1259[UP5];x-x,1249-1249[BULt];21-21,1242-1242[UP3]	.((((((.(((((((((.....&.....)))))))))-)))))).	UUCCGGGACGAAUCUUUAGUGU&UUAAAAAAGAUUCG-CUUGGAU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN6826_c0_g1_1254_TPlot.pdf
TRINITY_DN6826_c0_g1:1255	si_a298	TRINITY_DN6826_c0_g1	1243	1264	1255	-28.10	-19.00	0.676156583629893	13	7-15,1258-1250;16-21,1248-1243	1-6,1264-1259[UP5];x-x,1249-1249[BULt]	((((((.(((((((((......&......)))))))))-))))))	UCCGGGACGAAUCUUUAGUGUU&UUUAAAAAAGAUUCG-CUUGGA	2	0.856525680490292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a298_TRINITY_DN6826_c0_g1_1255_TPlot.pdf
TRINITY_DN6826_c0_g1:2202	si_s435	TRINITY_DN6826_c0_g1	2190	2211	2202	-20.90	-13.90	0.665071770334928	4	1-12,2211-2200;14-16,2198-2196;17-20,2194-2191	13-13,2199-2199[SIL];x-x,2195-2195[BULt];21-21,2190-2190[UP3]	.((((.(((.((((((((((((&)))))))))))).)))-)))).	UUAUAUUAACGUGUAAUUAUUG&CAAUAAUUACAUAUUA-UAUAU	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN6826_c0_g1_2202_TPlot.pdf
TRINITY_DN6826_c0_g1:266	si_s69	TRINITY_DN6826_c0_g1	255	275	266	-23.40	-15.90	0.67948717948718	9	3-8,273-268;10-20,266-256	1-2,275-274[UP5];9-9,267-267[SIL];21-21,255-255[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	AAAAGAAAAGGAUUGGAAGAG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6826_c0_g1_266_TPlot.pdf
TRINITY_DN6826_c0_g1:267	si_s68	TRINITY_DN6826_c0_g1	256	276	267	-23.10	-15.90	0.688311688311688	9.5	4-9,273-268;11-21,266-256	1-3,276-274[UP5];10-10,267-267[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAAGAAAAGGAUUGGAAGAGU&CAACUUCUAUUUUUUUUCUUU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6826_c0_g1_267_TPlot.pdf
TRINITY_DN6826_c0_g1:348	si_a326	TRINITY_DN6826_c0_g1	337	357	348	-26.20	-19.10	0.729007633587786	5.5	1-10,357-348;11-17,346-340;19-21,339-337	x-x,347-347[BULt];18-18,x-x[BULq]	(((-(((((((.((((((((((&))))))))))-))))))).)))	GGC-AGGAAUGUAAGAAAUCAU&AUGAUUUUUU-UAUUCCUUGUC	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN6826_c0_g1_348_TPlot.pdf
TRINITY_DN6826_c0_g1:349	si_a325	TRINITY_DN6826_c0_g1	338	358	349	-25.90	-19.30	0.745173745173745	5.5	1-11,358-348;12-18,346-340;20-21,339-338	x-x,347-347[BULt];19-19,x-x[BULq]	((-(((((((.(((((((((((&)))))))))))-))))))).))	GC-AGGAAUGUAAGAAAUCAUG&CAUGAUUUUUU-UAUUCCUUGU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN6826_c0_g1_349_TPlot.pdf
TRINITY_DN6826_c0_g1:350	si_a324	TRINITY_DN6826_c0_g1	338	359	350	-27.50	-18.70	0.68	6.5	2-12,358-348;13-19,346-340	1-1,359-359[UP5];x-x,347-347[BULt];20-21,339-338[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	GCAGGAAUGUAAGAAAUCAUGU&CCAUGAUUUUUU-UAUUCCUUG	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN6826_c0_g1_350_TPlot.pdf
TRINITY_DN6826_c0_g1:351	si_a323	TRINITY_DN6826_c0_g1	339	360	351	-26.80	-18.70	0.697761194029851	6.5	3-13,358-348;14-20,346-340	1-2,360-359[UP5];x-x,347-347[BULt];21-21,339-339[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	CAGGAAUGUAAGAAAUCAUGUC&UCCAUGAUUUUUU-UAUUCCUU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN6826_c0_g1_351_TPlot.pdf
TRINITY_DN6826_c0_g1:353	si_a321	TRINITY_DN6826_c0_g1	341	362	353	-26.70	-17.50	0.655430711610487	9	5-15,358-348;16-21,346-341	1-4,362-359[UP5];x-x,347-347[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	GGAAUGUAAGAAAUCAUGUCCU&UAUCCAUGAUUUUUU-UAUUCC	4	0.999996230722476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN6826_c0_g1_353_TPlot.pdf
TRINITY_DN6826_c0_g1:942	si_s605	TRINITY_DN6826_c0_g1	930	951	942	-27.50	-18.56	0.674909090909091	8	1-12,951-940;19-21,932-930	13-18,939-933[AILt]	(((.......((((((((((((&))))))))))))-......)))	GGAGAGCUUCAAAGAUUCGCUU&AAGCGAAUCUUU-UUUAAAUCC	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN6826_c0_g1_942_TPlot.pdf
TRINITY_DN6826_c0_g1:943	si_s604	TRINITY_DN6826_c0_g1	932	952	943	-26.80	-18.30	0.682835820895522	8	1-13,952-940	14-21,939-932[UP3]	........(((((((((((((&)))))))))))))........	AGAGCUUCAAAGAUUCGCUUG&CAAGCGAAUCUUUUUUAAAUC	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s604_TRINITY_DN6826_c0_g1_943_TPlot.pdf
TRINITY_DN6826_c0_g1:944	si_s603	TRINITY_DN6826_c0_g1	933	953	944	-27.20	-18.60	0.683823529411765	8	2-14,952-940	1-1,953-953[UP5];15-21,939-933[UP3]	.......(((((((((((((.&.))))))))))))).......	GAGCUUCAAAGAUUCGCUUGU&CCAAGCGAAUCUUUUUUAAAU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN6826_c0_g1_944_TPlot.pdf
TRINITY_DN6826_c0_g1:945	si_s602	TRINITY_DN6826_c0_g1	934	954	945	-28.10	-18.60	0.661921708185053	9	3-15,952-940	1-2,954-953[UP5];16-21,939-934[UP3]	......(((((((((((((..&..)))))))))))))......	AGCUUCAAAGAUUCGCUUGUG&UCCAAGCGAAUCUUUUUUAAA	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN6826_c0_g1_945_TPlot.pdf
TRINITY_DN6826_c0_g1:946	si_s601	TRINITY_DN6826_c0_g1	935	955	946	-28.30	-18.60	0.657243816254417	10	4-16,952-940	1-3,955-953[UP5];17-21,939-935[UP3]	.....(((((((((((((...&...))))))))))))).....	GCUUCAAAGAUUCGCUUGUGC&AUCCAAGCGAAUCUUUUUUAA	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN6826_c0_g1_946_TPlot.pdf
TRINITY_DN6826_c0_g1:948	si_s599	TRINITY_DN6826_c0_g1	937	957	948	-27.80	-18.60	0.669064748201439	12	6-18,952-940	1-5,957-953[UP5];19-21,939-937[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUCAAAGAUUCGCUUGUGCUA&AAAUCCAAGCGAAUCUUUUUU	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN6826_c0_g1_948_TPlot.pdf
TRINITY_DN6826_c0_g1:949	si_s598	TRINITY_DN6826_c0_g1	938	958	949	-28.20	-18.60	0.659574468085106	13	7-19,952-940	1-6,958-953[UP5];20-21,939-938[UP3]	..(((((((((((((......&......)))))))))))))..	UCAAAGAUUCGCUUGUGCUAU&UAAAUCCAAGCGAAUCUUUUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN6826_c0_g1_949_TPlot.pdf
TRINITY_DN68291_c0_g1:240	si_s531	TRINITY_DN68291_c0_g1	229	249	240	-30.00	-19.50	0.65	10.5	4-11,246-239;13-17,237-233;19-21,231-229	1-3,249-247[UP5];12-12,238-238[SIL];18-18,232-232[SIL]	(((.(((((.((((((((...&...)))))))).))))).)))	GAUGGGGUCUGAAGUGAUGAA&GAAAUCAUUUUUGAUCCGAUC	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN68291_c0_g1_240_TPlot.pdf
TRINITY_DN682_c0_g1:1170	si_a418	TRINITY_DN682_c0_g1	1160	1179	1170	-21.20	-13.80	0.650943396226415	4.5	2-12,1178-1168;14-21,1167-1160	1-1,1179-1179[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	AUUCUAUA-UUGUUUAAGUAA&AUAUUUAAAUAAAUAUAGGAU	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN682_c0_g1_1170_TPlot.pdf
TRINITY_DN682_c0_g1:1175	si_s486	TRINITY_DN682_c0_g1	1164	1184	1175	-18.10	-12.60	0.696132596685083	6.5	1-16,1184-1169	17-21,1168-1164[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUAUUGUUUAAGUAAAUAUA&UAUAUUUAUUUAAAUAUAAAC	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN682_c0_g1_1175_TPlot.pdf
TRINITY_DN682_c0_g1:1176	si_s485	TRINITY_DN682_c0_g1	1165	1185	1176	-18.10	-12.80	0.707182320441989	6.5	2-17,1184-1169	1-1,1185-1185[UP5];18-21,1168-1165[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUAUUGUUUAAGUAAAUAUAU&CUAUAUUUAUUUAAAUAUAAA	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN682_c0_g1_1176_TPlot.pdf
TRINITY_DN682_c0_g1:394	si_s889	TRINITY_DN682_c0_g1	383	403	394	-28.80	-18.80	0.652777777777778	16	8-20,396-384	1-7,403-397[UP5];21-21,383-383[UP3]	.(((((((((((((.......&.......))))))))))))).	UGAGAGGGGGCCUAGCCCGGG&AAAUAAAUAGGCUUUCUCUUC	3	0.999994472798421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN682_c0_g1_394_TPlot.pdf
TRINITY_DN682_c0_g1:395	si_s888	TRINITY_DN682_c0_g1	384	404	395	-26.80	-18.80	0.701492537313433	17	9-21,396-384	1-8,404-397[UP5]	(((((((((((((........&........)))))))))))))	GAGAGGGGGCCUAGCCCGGGA&AAAAUAAAUAGGCUUUCUCUU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN682_c0_g1_395_TPlot.pdf
TRINITY_DN682_c0_g1:396	si_s887	TRINITY_DN682_c0_g1	385	405	396	-26.80	-17.70	0.66044776119403	18.5	10-21,396-385	1-9,405-397[UP5]	((((((((((((.........&.........))))))))))))	AGAGGGGGCCUAGCCCGGGAA&AAAAAUAAAUAGGCUUUCUCU	3	0.99907353293984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN682_c0_g1_396_TPlot.pdf
TRINITY_DN682_c0_g1:947	si_a786	TRINITY_DN682_c0_g1	937	955	947	-26.60	-17.30	0.650375939849624	5.5	1-6,955-950;8-14,949-943;16-21,942-937	7-7,x-x[BULq];15-15,x-x[BULq]	((((((-(((((((-((((((&)))))).))))))).))))))	GGAGAA-AGAAAGA-AGGAGA&UCUUCUAUUUUUCUAUUUUCC	2	0.999999999978355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN682_c0_g1_947_TPlot.pdf
TRINITY_DN682_c0_g1:948	si_s84	TRINITY_DN682_c0_g1	936	957	948	-32.30	-22.00	0.681114551083591	6.5	1-10,957-948;12-16,946-942;17-20,940-937	11-11,947-947[SIL];x-x,941-941[BULt];21-21,936-936[UP3]	.((((.(((((.((((((((((&)))))))))).)))))-)))).	UGGAGAAAGAAAGAAGGAGAGA&UCUUUCCUUUCUUCUU-CUUCG	2	0.999999998564711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN682_c0_g1_948_TPlot.pdf
TRINITY_DN682_c0_g1:949	si_s83	TRINITY_DN682_c0_g1	937	958	949	-30.90	-22.20	0.718446601941748	5.5	1-11,958-948;13-17,946-942;18-21,940-937	12-12,947-947[SIL];x-x,941-941[BULt]	((((.(((((.(((((((((((&))))))))))).)))))-))))	GGAGAAAGAAAGAAGGAGAGAA&UUCUUUCCUUUCUUCUU-CUUC	3	0.999999999956019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN682_c0_g1_949_TPlot.pdf
TRINITY_DN682_c0_g1:950	si_s82	TRINITY_DN682_c0_g1	938	959	950	-28.90	-20.30	0.70242214532872	5.5	2-12,958-948;14-18,946-942;19-21,940-938	1-1,959-959[UP5];13-13,947-947[SIL];x-x,941-941[BULt]	(((.(((((.(((((((((((.&.))))))))))).)))))-)))	GAGAAAGAAAGAAGGAGAGAAG&UUUCUUUCCUUUCUUCUU-CUU	2	0.999999999995489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN682_c0_g1_950_TPlot.pdf
TRINITY_DN682_c0_g1:951	si_s69	TRINITY_DN682_c0_g1	940	961	951	-23.40	-17.30	0.739316239316239	9.5	3-7,959-955;9-21,952-940	1-2,961-960[UP5];8-8,954-953[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GAAAGAAAGAAGGAGAGAAGAA&AACUUCU-AUUUUUUUUCUUUC	3	0.999999999120068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN682_c0_g1_951_TPlot.pdf
TRINITY_DN682_c0_g1:952	si_s80	TRINITY_DN682_c0_g1	941	961	952	-28.20	-20.90	0.74113475177305	4.5	1-14,961-948;16-20,946-942	15-15,947-947[SIL];21-21,941-941[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AAAGAAAGAAGGAGAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	3	0.999999999917622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN682_c0_g1_952_TPlot.pdf
TRINITY_DN682_c0_g1:953	si_s79	TRINITY_DN682_c0_g1	942	962	953	-26.20	-21.80	0.83206106870229	3.5	1-15,962-948;17-21,946-942	16-16,947-947[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AAGAAAGAAGGAGAGAAGAAA&UUUUUUCUUUCCUUUCUUCUU	4	0.998370975090572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN682_c0_g1_953_TPlot.pdf
TRINITY_DN682_c0_g1:954	si_s78	TRINITY_DN682_c0_g1	943	963	954	-26.20	-21.80	0.83206106870229	3.5	1-16,963-948;18-21,946-943	17-17,947-947[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	AGAAAGAAGGAGAGAAGAAAA&UUUUUUUCUUUCCUUUCUUCU	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN682_c0_g1_954_TPlot.pdf
TRINITY_DN682_c0_g1:955	si_s77	TRINITY_DN682_c0_g1	944	964	955	-25.50	-20.70	0.811764705882353	4.5	2-17,963-948;19-21,946-944	1-1,964-964[UP5];18-18,947-947[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GAAAGAAGGAGAGAAGAAAAG&UUUUUUUUCUUUCCUUUCUUC	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN682_c0_g1_955_TPlot.pdf
TRINITY_DN682_c0_g1:956	si_s76	TRINITY_DN682_c0_g1	946	965	956	-23.60	-18.80	0.796610169491525	6	3-17,963-949;19-21,948-946	1-2,965-964[UP5];18-18,x-x[BULq]	(((-(((((((((((((((..&..))))))))))))))).)))	AAG-AAGGAGAGAAGAAAAGA&AUUUUUUUUCUUUCCUUUCUU	3	0.999999869376044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN682_c0_g1_956_TPlot.pdf
TRINITY_DN682_c0_g1:957	si_s75	TRINITY_DN682_c0_g1	946	966	957	-24.00	-18.50	0.770833333333333	9	4-19,963-948	1-3,966-964[UP5];20-21,947-946[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAAGGAGAGAAGAAAAGAA&UAUUUUUUUUCUUUCCUUUCU	3	0.999999893314632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN682_c0_g1_957_TPlot.pdf
TRINITY_DN682_c0_g1:958	si_s74	TRINITY_DN682_c0_g1	947	967	958	-25.00	-18.50	0.74	10	5-20,963-948	1-4,967-964[UP5];21-21,947-947[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGAAGGAGAGAAGAAAAGAAA&CUAUUUUUUUUCUUUCCUUUC	3	0.999999922832203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN682_c0_g1_958_TPlot.pdf
TRINITY_DN682_c0_g1:959	si_s73	TRINITY_DN682_c0_g1	948	970	959	-24.00	-18.40	0.766666666666667	9	1-3,970-968;5-21,964-948	4-4,967-965[AILt]	(((((((((((((((((...(((&)))--.)))))))))))))))))	GAAGGAGAGAAGAAAAGAAAAGA&UCU--AUUUUUUUUCUUUCCUUU	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN682_c0_g1_959_TPlot.pdf
TRINITY_DN682_c0_g1:960	si_s72	TRINITY_DN682_c0_g1	949	971	960	-24.10	-17.40	0.721991701244813	9.5	2-4,970-968;6-21,964-949	1-1,971-971[UP5];5-5,967-965[AILt]	((((((((((((((((...(((.&.)))--.))))))))))))))))	AAGGAGAGAAGAAAAGAAAAGAC&UUCU--AUUUUUUUUCUUUCCUU	2	0.999999983127184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN682_c0_g1_960_TPlot.pdf
TRINITY_DN68301_c0_g1:183	si_a142	TRINITY_DN68301_c0_g1	167	192	183	-23.50	-15.80	0.672340425531915	16	2-11,191-182;12-21,176-167	1-1,192-192[UP5];x-x,181-177[BULt]	((((((((((.....((((((((((.&.))))))))))-----))))))))))	UUGAGGCGACUUACUGAUGAUUGAUG&AAUUAAUCGUU-----GUUGUUUUAA	4	0.999999999999444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN68301_c0_g1_183_TPlot.pdf
TRINITY_DN6830_c0_g1:1731	si_a810	TRINITY_DN6830_c0_g1	1720	1741	1731	-35.30	-23.60	0.668555240793201	8	3-6,1739-1736;7-18,1734-1723	1-2,1741-1740[UP5];x-x,1735-1735[BULt];19-21,1722-1720[UP3]	...((((((((((((.((((..&..))))-))))))))))))...	UCGUCUUCUUCUUCGUCUUCUU&CCGAAG-CGAAGAAGAAGAAAG	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a810_TRINITY_DN6830_c0_g1_1731_TPlot.pdf
TRINITY_DN6830_c0_g1:3148	si_a317	TRINITY_DN6830_c0_g1	3137	3156	3148	-24.30	-16.10	0.662551440329218	8	3-9,3154-3148;11-20,3147-3138	1-2,3156-3155[UP5];10-10,x-x[BULq];21-21,3137-3137[UP3]	.((((((((((-(((((((..&..))))))).)))))))))).	GGGAAAAAUCA-GGAUGAAGA&GAUUUAUCCAUGAUUUUUUUA	4	0.999999998639336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN6830_c0_g1_3148_TPlot.pdf
TRINITY_DN6830_c0_g1:6851	si_a143	TRINITY_DN6830_c0_g1	6839	6860	6851	-25.10	-16.50	0.657370517928287	6.5	3-16,6858-6845;17-20,6843-6840	1-2,6860-6859[UP5];x-x,6844-6844[BULt];21-21,6839-6839[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	AUUAACAGCAACAAUGAUUAUG&AUUAAUCGUUGUUGUU-UUAAG	4	0.999999976508978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN6830_c0_g1_6851_TPlot.pdf
TRINITY_DN6830_c0_g1:7201	si_s79	TRINITY_DN6830_c0_g1	7190	7210	7201	-26.20	-17.80	0.679389312977099	12.5	4-16,7207-7195	1-3,7210-7208[UP5];17-21,7194-7190[UP3]	.....(((((((((((((...&...))))))))))))).....	ACUAUGAGAGGAGAGAGAUAC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6830_c0_g1_7201_TPlot.pdf
TRINITY_DN6830_c1_g1:427	si_a396	TRINITY_DN6830_c1_g1	418	436	427	-24.70	-17.10	0.692307692307692	6	2-15,435-422;18-21,421-418	1-1,436-436[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	GACA--AUAGUUCUAUGUUCA&AGAAUAUAGAAUUGUUUUGUU	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN6830_c1_g1_427_TPlot.pdf
TRINITY_DN6830_c1_g1:429	si_a394	TRINITY_DN6830_c1_g1	418	438	429	-24.30	-16.30	0.670781893004115	10	4-18,435-421	1-3,438-436[UP5];19-21,420-418[UP3]	...(((((((((((((((...&...)))))))))))))))...	GACAAUAGUUCUAUGUUCAGG&UAAGAAUAUAGAAUUGUUUUG	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a394_TRINITY_DN6830_c1_g1_429_TPlot.pdf
TRINITY_DN6830_c1_g1:430	si_a393	TRINITY_DN6830_c1_g1	419	439	430	-22.70	-16.30	0.718061674008811	11	5-19,435-421	1-4,439-436[UP5];20-21,420-419[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAAUAGUUCUAUGUUCAGGG&UUAAGAAUAUAGAAUUGUUUU	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN6830_c1_g1_430_TPlot.pdf
TRINITY_DN6832_c0_g1:463	si_a408	TRINITY_DN6832_c0_g1	452	472	463	-20.10	-14.10	0.701492537313433	8.5	3-20,470-453	1-2,472-471[UP5];21-21,452-452[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CAUUUAGAUGUAGAUAAAGAU&UGUUUUGUUUAUAUUUAAAUA	4	0.999996737848876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN6832_c0_g1_463_TPlot.pdf
TRINITY_DN6832_c0_g1:465	si_a406	TRINITY_DN6832_c0_g1	454	475	465	-19.80	-13.80	0.696969696969697	7	1-8,475-468;9-21,466-454	x-x,467-467[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	UUUAGAUGUAGAUAAAGAUAAU&AUUGUUUU-GUUUAUAUUUAAA	4	0.99999999999921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN6832_c0_g1_465_TPlot.pdf
TRINITY_DN6834_c0_g1:1279	si_s239	TRINITY_DN6834_c0_g1	1268	1287	1279	-35.80	-24.00	0.670391061452514	8	2-8,1286-1280;12-20,1277-1269	1-1,1287-1287[UP5];9-11,1279-1278[AILq];21-21,1268-1268[UP3]	.(((((((((..-(((((((.&.)))))))...))))))))).	UGGAAAUGCCAA-UGAUUCCC&AGGAAUCAAUAGGCAUUUCCC	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s239_TRINITY_DN6834_c0_g1_1279_TPlot.pdf
TRINITY_DN68351_c0_g1:411	si_a548	TRINITY_DN68351_c0_g1	400	421	411	-27.20	-18.80	0.691176470588235	8	2-4,420-418;5-20,416-401	1-1,421-421[UP5];x-x,417-417[BULt];21-21,400-400[UP3]	.((((((((((((((((.(((.&.)))-)))))))))))))))).	UGGGUGGAGAAGUAGAUGUGGU&UUCA-AUCUAUUUCUUUAUCUC	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN68351_c0_g1_411_TPlot.pdf
TRINITY_DN68351_c0_g1:415	si_s64	TRINITY_DN68351_c0_g1	404	427	415	-24.10	-16.30	0.676348547717842	15	4-9,424-419;10-20,415-405	1-3,427-425[UP5];x-x,418-416[BULt];21-21,404-404[UP3]	.(((((((((((...((((((...&...))))))---))))))))))).	UGGAGAAGUAGAUGUGGUUGCAUG&UUAGCAACU---UCUAUUUUUUUU	2	0.999993920168789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN68351_c0_g1_415_TPlot.pdf
TRINITY_DN68364_c0_g1:25	si_s423	TRINITY_DN68364_c0_g1	14	34	25	-21.50	-14.50	0.674418604651163	10	6-20,29-15	1-5,34-30[UP5];21-21,14-14[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAAUUAUUGUUAUAUAAAUUA&UAUUCUAUAUAACAAUAAUUA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN68364_c0_g1_25_TPlot.pdf
TRINITY_DN6837_c0_g1:1400	si_s400	TRINITY_DN6837_c0_g1	1389	1409	1400	-34.40	-28.36	0.824418604651163	4	1-13,1409-1397;18-21,1392-1389	14-17,1396-1393[SIL]	((((....(((((((((((((&)))))))))))))....))))	UCGUGUCGCGUCUUCCUUGGA&UCCAAGGAAGACGAAAAACGA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s400_TRINITY_DN6837_c0_g1_1400_TPlot.pdf
TRINITY_DN6837_c0_g1:1401	si_s399	TRINITY_DN6837_c0_g1	1390	1410	1401	-33.50	-26.36	0.786865671641791	5	2-14,1409-1397;19-21,1392-1390	1-1,1410-1410[UP5];15-18,1396-1393[SIL]	(((....(((((((((((((.&.)))))))))))))....)))	CGUGUCGCGUCUUCCUUGGAC&UUCCAAGGAAGACGAAAAACG	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s399_TRINITY_DN6837_c0_g1_1401_TPlot.pdf
TRINITY_DN6837_c0_g1:1402	si_s398	TRINITY_DN6837_c0_g1	1391	1411	1402	-32.10	-24.56	0.765109034267913	7	3-15,1409-1397;20-21,1392-1391	1-2,1411-1410[UP5];16-19,1396-1393[SIL]	((....(((((((((((((..&..)))))))))))))....))	GUGUCGCGUCUUCCUUGGACU&AUUCCAAGGAAGACGAAAAAC	2	0.0123690158568801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s398_TRINITY_DN6837_c0_g1_1402_TPlot.pdf
TRINITY_DN6837_c0_g1:1408	si_s392	TRINITY_DN6837_c0_g1	1397	1418	1408	-36.30	-26.30	0.724517906336088	9	4-7,1415-1412;9-21,1409-1397	1-3,1418-1416[UP5];8-8,1411-1410[AILt]	(((((((((((((..((((...&...))))-.)))))))))))))	CGUCUUCCUUGGACUUGUACGU&CCUUACA-UUCCAAGGAAGACG	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s392_TRINITY_DN6837_c0_g1_1408_TPlot.pdf
TRINITY_DN683_c0_g1:629	si_s52	TRINITY_DN683_c0_g1	618	638	629	-31.30	-23.50	0.750798722044728	4.5	1-8,638-631;10-21,629-618	9-9,630-630[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AGUUGUUAACUUUGGAUCCAA&UUGGAUUUCAAGUUAGCAACU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN683_c0_g1_629_TPlot.pdf
TRINITY_DN683_c0_g1:802	si_s78	TRINITY_DN683_c0_g1	791	812	802	-26.20	-17.90	0.683206106870229	13.5	6-9,807-804;10-20,802-792	1-5,812-808[UP5];x-x,803-803[BULt];21-21,791-791[UP3]	.(((((((((((.((((.....&.....))))-))))))))))).	CGAAGAGAGGAACAGGACUAGU&UUUUUUUCU-UUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN683_c0_g1_802_TPlot.pdf
TRINITY_DN683_c0_g2:695	si_a399	TRINITY_DN683_c0_g2	683	704	695	-22.60	-15.30	0.676991150442478	7	2-5,703-700;7-16,698-689;17-21,687-683	1-1,704-704[UP5];6-6,699-699[SIL];x-x,688-688[BULt]	(((((.((((((((((.((((.&.)))).))))))))))-)))))	AUGAAUCAAGACGAUUGUGUAG&AUAUAGAAUUGUUUUG-UUUAU	4	0.999999720304535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN683_c0_g2_695_TPlot.pdf
TRINITY_DN683_c0_g2:971	si_a496	TRINITY_DN683_c0_g2	959	980	971	-32.40	-21.60	0.666666666666667	7	1-15,980-966;17-20,963-960	16-16,965-964[AILt];21-21,959-959[UP3]	.((((..(((((((((((((((&)))))))))))))))-.)))).	UGGAAUCACGGAAGAUGGCAUA&UAUGUCGUUUUUCGU-CUUCCU	4	0.999999999952959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN683_c0_g2_971_TPlot.pdf
TRINITY_DN68413_c0_g1:31	si_s72	TRINITY_DN68413_c0_g1	19	40	31	-24.10	-17.20	0.713692946058091	7	2-4,39-37;6-18,35-23;19-21,21-19	1-1,40-40[UP5];5-5,36-36[SIL];x-x,22-22[BULt]	(((.(((((((((((((.(((.&.))).)))))))))))))-)))	GAGAGAGAGAAAAGAGAAAGAG&UUCUAUUUUUUUUCUUUC-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN68413_c0_g1_31_TPlot.pdf
TRINITY_DN68413_c0_g1:49	si_s82	TRINITY_DN68413_c0_g1	38	59	49	-28.90	-20.90	0.72318339100346	6	1-8,59-52;9-15,50-44;17-21,42-38	x-x,51-51[BULt];16-16,43-43[SIL]	(((((.(((((((.((((((((&))))))))-))))))).)))))	GAGAAAGAGAGAGAGAAAGAGA&UUUCUUUC-CUUUCUUCUUCUU	4	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN68413_c0_g1_49_TPlot.pdf
TRINITY_DN6842_c0_g1:2701	si_a142	TRINITY_DN6842_c0_g1	2690	2710	2701	-23.50	-17.40	0.740425531914894	11	5-19,2706-2692	1-4,2710-2707[UP5];20-21,2691-2690[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAAAACGGCGACGAUUUGCG&AAUUAAUCGUUGUUGUUUUAA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN6842_c0_g1_2701_TPlot.pdf
TRINITY_DN6842_c0_g1:2702	si_a141	TRINITY_DN6842_c0_g1	2691	2711	2702	-23.80	-17.40	0.73109243697479	12	6-20,2706-2692	1-5,2711-2707[UP5];21-21,2691-2691[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAACGGCGACGAUUUGCGA&UAAUUAAUCGUUGUUGUUUUA	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN6842_c0_g1_2702_TPlot.pdf
TRINITY_DN6842_c0_g1:2744	si_a319	TRINITY_DN6842_c0_g1	2732	2753	2744	-22.40	-14.70	0.65625	9.5	5-15,2749-2739;17-21,2736-2732	1-4,2753-2750[UP5];16-16,2738-2737[AILt]	(((((..(((((((((((....&....)))))))))))-.)))))	AAUGAUCAAAAUCAUGGACAGG&UUUAUCCAUGAUUUU-UUUAUU	2	0.999999999897431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN6842_c0_g1_2744_TPlot.pdf
TRINITY_DN6842_c0_g1:2838	si_a353	TRINITY_DN6842_c0_g1	2827	2847	2838	-24.00	-15.70	0.654166666666667	11	4-7,2844-2841;10-20,2838-2828	1-3,2847-2845[UP5];8-9,2840-2839[SIL];21-21,2827-2827[UP3]	.(((((((((((..((((...&...))))..))))))))))).	UGAUCGAAGUAGUUUUAAAUG&AUAUUAAUUCUAUUUUGAUCG	2	0.996164396646073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN6842_c0_g1_2838_TPlot.pdf
TRINITY_DN6845_c2_g1:1338	si_a784	TRINITY_DN6845_c2_g1	1328	1347	1338	-24.70	-16.50	0.668016194331984	9	2-11,1346-1337;14-20,1335-1329	1-1,1347-1347[UP5];12-13,1336-1336[AILq];21-21,1328-1328[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	CAAAUGGGU-GAUAGGGGAGG&ACUCUUCUAUUUUUCUAUUUU	0	0.619996364419965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6845_c2_g1_1338_TPlot.pdf
TRINITY_DN6846_c0_g1:340	si_s76	TRINITY_DN6846_c0_g1	328	349	340	-23.60	-16.50	0.699152542372881	3	1-14,349-336;16-21,333-328	15-15,335-334[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	AAGAAACUGAAAGAGAAAAAAU&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6846_c0_g1_340_TPlot.pdf
TRINITY_DN684_c0_g1:1644	si_a622	TRINITY_DN684_c0_g1	1633	1653	1644	-35.10	-23.20	0.660968660968661	5.5	1-13,1653-1641;15-20,1639-1634	14-14,1640-1640[SIL];21-21,1633-1633[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UUUGAUGAAAUACGUCUGGUC&GACUAGGCGUAUUAUGUCGAU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN684_c0_g1_1644_TPlot.pdf
TRINITY_DN684_c0_g1:2127	si_a596	TRINITY_DN684_c0_g1	2116	2137	2127	-32.30	-22.00	0.681114551083591	12	1-6,2137-2132;8-8,2130-2130;13-21,2124-2116	7-7,2131-2131[SIL];9-12,2129-2125[AILt]	(((((((((.....(.((((((&)))))).)-....)))))))))	GAAUUGCGACAUAGUGUGUCCU&AGGACAGA-AUUUUCGCAAUUC	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a596_TRINITY_DN684_c0_g1_2127_TPlot.pdf
TRINITY_DN684_c0_g1:2487	si_s74	TRINITY_DN684_c0_g1	2476	2498	2487	-25.00	-16.80	0.672	9.5	1-8,2498-2491;9-17,2488-2480;19-21,2478-2476	x-x,2490-2489[BULt];18-18,2479-2479[SIL]	(((.(((((((((..((((((((&))))))))--))))))))).)))	GGGUGGAGAGAAACAGAGAAUGG&CUAUUUUU--UUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN684_c0_g1_2487_TPlot.pdf
TRINITY_DN684_c0_g1:2488	si_s73	TRINITY_DN684_c0_g1	2477	2499	2488	-24.00	-16.00	0.666666666666667	11.5	2-9,2498-2491;10-18,2488-2480	1-1,2499-2499[UP5];x-x,2490-2489[BULt];19-21,2479-2477[UP3]	...(((((((((..((((((((.&.))))))))--)))))))))...	GGUGGAGAGAAACAGAGAAUGGC&UCUAUUUUU--UUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN684_c0_g1_2488_TPlot.pdf
TRINITY_DN684_c0_g1:2491	si_s72	TRINITY_DN684_c0_g1	2478	2500	2491	-24.10	-16.00	0.663900414937759	12.5	3-10,2498-2491;11-19,2488-2480	1-2,2500-2499[UP5];x-x,2490-2489[BULt];20-21,2479-2478[UP3]	..(((((((((..((((((((..&..))))))))--)))))))))..	GUGGAGAGAAACAGAGAAUGGCG&UUCUAUUUUU--UUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN684_c0_g1_2491_TPlot.pdf
TRINITY_DN684_c0_g1:412	si_a320	TRINITY_DN684_c0_g1	401	419	412	-24.40	-16.60	0.680327868852459	6	1-8,419-412;11-21,411-401	9-10,x-x[BULq]	(((((((((((--((((((((&))))))))..)))))))))))	GAAUGAAGAAG--AUGGAUAA&UUAUCCAUGAUUUUUUUAUUC	2	0.999344938649954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN684_c0_g1_412_TPlot.pdf
TRINITY_DN684_c0_g1:977	si_a65	TRINITY_DN684_c0_g1	965	986	977	-27.70	-21.40	0.772563176895307	6.5	1-16,986-971;17-19,969-967	x-x,970-970[BULt];20-21,966-965[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	GUAGCGAAUUUGGAAGGGGCGA&UCGCUUCUUUCAAAUU-GUUUU	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN684_c0_g1_977_TPlot.pdf
TRINITY_DN684_c0_g1:980	si_a62	TRINITY_DN684_c0_g1	968	991	980	-32.20	-21.20	0.658385093167702	8.5	1-3,991-989;4-19,986-971;20-21,969-968	x-x,988-987[BULt];x-x,970-970[BULt]	((.((((((((((((((((..(((&)))--))))))))))))))))-))	GCGAAUUUGGAAGGGGCGAUAGUU&GAC--UCGCUUCUUUCAAAUU-GU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN684_c0_g1_980_TPlot.pdf
TRINITY_DN6851_c0_g1:1418	si_a409	TRINITY_DN6851_c0_g1	1408	1427	1418	-19.50	-12.72	0.652307692307692	7	1-10,1427-1418;15-21,1414-1408	11-14,1417-1415[AILq]	(((((((...-((((((((((&))))))))))....)))))))	UUAUUUAUUU-UAAACAGAAC&GUUUUGUUUAUAUUUAAAUAA	2	0.999999999732561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN6851_c0_g1_1418_TPlot.pdf
TRINITY_DN6851_c0_g1:1553	si_s76	TRINITY_DN6851_c0_g1	1541	1562	1553	-23.60	-15.60	0.661016949152542	13.5	6-17,1557-1546;18-20,1544-1542	1-5,1562-1558[UP5];x-x,1545-1545[BULt];21-21,1541-1541[UP3]	.(((.((((((((((((.....&.....))))))))))))-))).	UGGACAAGGAGAGAGAACAACA&AUUUUUUUUCUUUCCUU-UCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6851_c0_g1_1553_TPlot.pdf
TRINITY_DN6851_c0_g1:3773	si_s77	TRINITY_DN6851_c0_g1	3755	3782	3773	-25.50	-17.10	0.670588235294118	10.5	1-10,3782-3773;11-15,3771-3767;16-21,3760-3755	x-x,3772-3772[BULt];x-x,3766-3761[BULt]	((((((......(((((.((((((((((&))))))))))-)))))------))))))	GAAGAAAAAAAUGGGAGAAGAAAAAGAA&UUUUUUUUCU-UUCCU------UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6851_c0_g1_3773_TPlot.pdf
TRINITY_DN6852_c0_g1:1829	si_a866	TRINITY_DN6852_c0_g1	1818	1838	1829	-23.30	-15.70	0.67381974248927	7.5	4-21,1835-1818	1-3,1838-1836[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAACUGGAUUUUUAAUAAAAU&CAAUUAUUAAAGAUUUAGUUG	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN6852_c0_g1_1829_TPlot.pdf
TRINITY_DN6852_c0_g1:2174	si_a638	TRINITY_DN6852_c0_g1	2163	2183	2174	-24.40	-16.20	0.663934426229508	7.5	1-13,2183-2171;15-18,2169-2166	14-14,2170-2170[SIL];19-21,2165-2163[UP3]	...((((.(((((((((((((&))))))))))))).))))...	CUGAUUGGUCGAAAAGAUUGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999999708515712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN6852_c0_g1_2174_TPlot.pdf
TRINITY_DN6852_c0_g1:2175	si_a637	TRINITY_DN6852_c0_g1	2164	2184	2175	-25.80	-19.30	0.748062015503876	6.5	1-14,2184-2171;16-19,2169-2166	15-15,2170-2170[SIL];20-21,2165-2164[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	UGAUUGGUCGAAAAGAUUGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN6852_c0_g1_2175_TPlot.pdf
TRINITY_DN6852_c0_g1:2176	si_a636	TRINITY_DN6852_c0_g1	2165	2185	2176	-26.30	-19.50	0.741444866920152	6	2-15,2184-2171;17-20,2169-2166	1-1,2185-2185[UP5];16-16,2170-2170[SIL];21-21,2165-2165[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	GAUUGGUCGAAAAGAUUGACU&UGUCGAUUUUUUUGAGUAAUA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN6852_c0_g1_2176_TPlot.pdf
TRINITY_DN6852_c0_g1:2177	si_a635	TRINITY_DN6852_c0_g1	2166	2186	2177	-26.10	-19.10	0.731800766283525	7	3-16,2184-2171;18-21,2169-2166	1-2,2186-2185[UP5];17-17,2170-2170[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AUUGGUCGAAAAGAUUGACUA&AUGUCGAUUUUUUUGAGUAAU	3	0.992841838457232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN6852_c0_g1_2177_TPlot.pdf
TRINITY_DN6852_c0_g1:2178	si_a634	TRINITY_DN6852_c0_g1	2167	2187	2178	-26.40	-17.90	0.678030303030303	9	4-17,2184-2171;19-21,2169-2167	1-3,2187-2185[UP5];18-18,2170-2170[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	UUGGUCGAAAAGAUUGACUAA&UAUGUCGAUUUUUUUGAGUAA	3	0.99999963322098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN6852_c0_g1_2178_TPlot.pdf
TRINITY_DN68535_c0_g1:40	si_a118	TRINITY_DN68535_c0_g1	27	49	40	-30.70	-22.70	0.739413680781759	11.5	1-12,49-38;14-18,34-30	13-13,37-35[AILt];19-21,29-27[UP3]	...(((((...((((((((((((&))))))))))))--.)))))...	AUCGCUGUUUUGAGCGAGCUCGU&ACGAGCUUGUUU--UAUAGCAAU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN68535_c0_g1_40_TPlot.pdf
TRINITY_DN68606_c0_g1:295	si_s73	TRINITY_DN68606_c0_g1	284	305	295	-24.00	-16.62	0.6925	10.5	1-8,305-298;12-21,293-284	9-11,297-294[AILt]	((((((((((....((((((((&))))))))-...))))))))))	AGGGGAGAGACUUCAAAAUGGA&UCUAUUUU-UUUUCUUUCCUUU	1	0.467819958020682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN68606_c0_g1_295_TPlot.pdf
TRINITY_DN6861_c0_g1:931	si_a760	TRINITY_DN6861_c0_g1	920	940	931	-31.10	-20.30	0.652733118971061	6.5	1-19,940-922	20-21,921-920[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UGUAAUUAGGAACUUAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.999999999562797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN6861_c0_g1_931_TPlot.pdf
TRINITY_DN68621_c0_g1:229	si_a633	TRINITY_DN68621_c0_g1	217	239	229	-26.40	-17.80	0.674242424242424	5.5	1-4,239-236;5-17,234-222;18-21,220-217	x-x,235-235[BULt];x-x,221-221[BULt]	((((.(((((((((((((.((((&))))-)))))))))))))-))))	UAUUCCAAAAGAAUCGACUAUGA&UUAU-GUCGAUUUUUUUG-AGUA	2	0.999944277087014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN68621_c0_g1_229_TPlot.pdf
TRINITY_DN68621_c0_g1:343	si_a768	TRINITY_DN68621_c0_g1	332	352	343	-28.40	-18.58	0.654225352112676	9	1-7,352-346;11-21,342-332	8-10,345-343[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	AGAGUUGAAUUCGGUAAAGAC&GUUUUUGAUUGAUUCAACUCU	4	0.99976599203554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN68621_c0_g1_343_TPlot.pdf
TRINITY_DN6862_c0_g2:134	si_s806	TRINITY_DN6862_c0_g2	121	143	134	-28.60	-19.40	0.678321678321678	7.5	2-13,142-131;14-15,129-128;16-20,126-122	1-1,143-143[UP5];x-x,130-130[BULt];x-x,127-127[BULt];21-21,121-121[UP3]	.(((((.((.((((((((((((.&.))))))))))))-))-))))).	UGGAAACAGUGUGGCGGAGAUAC&UUAUCUUCGUUAC-CU-UUUCUU	2	0.999987329205299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6862_c0_g2_134_TPlot.pdf
TRINITY_DN68645_c0_g1:64	si_a70	TRINITY_DN68645_c0_g1	53	73	64	-23.90	-15.80	0.661087866108787	6	1-16,73-58	17-21,57-53[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACUACAAAAUAAUUUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	4	0.99999999999834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN68645_c0_g1_64_TPlot.pdf
TRINITY_DN68645_c0_g1:65	si_a69	TRINITY_DN68645_c0_g1	54	74	65	-24.00	-16.00	0.666666666666667	5.5	2-17,73-58	1-1,74-74[UP5];18-21,57-54[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUACAAAAUAAUUUGAAAGAU&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999989358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN68645_c0_g1_65_TPlot.pdf
TRINITY_DN6864_c0_g1:417	si_s75	TRINITY_DN6864_c0_g1	402	426	417	-24.00	-16.90	0.704166666666667	12.5	2-12,425-415;13-21,410-402	1-1,426-426[UP5];x-x,414-411[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	GGGAAGGAGGCUUGGGAAAAAAAUC&UAUUUUUUUUCU----UUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6864_c0_g1_417_TPlot.pdf
TRINITY_DN6867_c0_g1:1237	si_a307	TRINITY_DN6867_c0_g1	1226	1246	1237	-33.00	-21.90	0.663636363636364	7.5	1-8,1246-1239;11-14,1236-1233;16-21,1231-1226	9-10,1238-1237[SIL];15-15,1232-1232[SIL]	((((((.((((..((((((((&))))))))..)))).))))))	GUGGAUUGGUCGUAGUGAAUC&GAUUCGCUUGGAUUUAUCCAU	2	0.977259987595635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN6867_c0_g1_1237_TPlot.pdf
TRINITY_DN6867_c0_g1:2120	si_a684	TRINITY_DN6867_c0_g1	2108	2129	2120	-35.80	-24.00	0.670391061452514	7	2-11,2128-2119;12-16,2117-2113;18-19,2111-2110	1-1,2129-2129[UP5];x-x,2118-2118[BULt];17-17,2112-2112[SIL];20-21,2109-2108[UP3]	..((.(((((.((((((((((.&.))))))))))-))))).))..	CAGUUUUCGGCAACCGCGUGAU&UUCACGCGGUU-UCGAACACAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a684_TRINITY_DN6867_c0_g1_2120_TPlot.pdf
TRINITY_DN6868_c0_g1:2199	si_a641	TRINITY_DN6868_c0_g1	2189	2208	2199	-23.60	-16.60	0.703389830508475	7	3-12,2206-2197;15-21,2195-2189	1-2,2208-2207[UP5];13-14,2196-2196[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	CGGUAUGG-ACUCAAAAGAGA&AUUUUUUUGAGUAAUAUAUCG	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN6868_c0_g1_2199_TPlot.pdf
TRINITY_DN6868_c0_g1:2892	si_s623	TRINITY_DN6868_c0_g1	2882	2899	2892	-36.40	-25.20	0.692307692307692	6	1-3,2899-2897;6-14,2896-2888;16-21,2887-2882	4-5,x-x[BULq];15-15,x-x[BULq]	((((((-(((((((((--(((&)))..))))))))).))))))	CCUGCG-AGAGAUCGC--GGA&UCCAAGCGAUCUUUUCGUAGG	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN6868_c0_g1_2892_TPlot.pdf
TRINITY_DN6868_c0_g1:4233	si_a556	TRINITY_DN6868_c0_g1	4221	4242	4233	-33.40	-25.20	0.754491017964072	6.5	1-8,4242-4235;10-14,4233-4229;15-21,4227-4221	9-9,4234-4234[SIL];x-x,4228-4228[BULt]	(((((((.(((((.((((((((&)))))))).)))))-)))))))	UUCGCGGAGGAGGAAGAGAAGU&AUUUCUUUAUCUCC-CCGUGAA	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN6868_c0_g1_4233_TPlot.pdf
TRINITY_DN6868_c0_g1:4234	si_a555	TRINITY_DN6868_c0_g1	4222	4243	4234	-33.70	-24.30	0.72106824925816	7.5	2-9,4242-4235;11-15,4233-4229;16-21,4227-4222	1-1,4243-4243[UP5];10-10,4234-4234[SIL];x-x,4228-4228[BULt]	((((((.(((((.((((((((.&.)))))))).)))))-))))))	UCGCGGAGGAGGAAGAGAAGUU&UAUUUCUUUAUCUCC-CCGUGA	2	0.606809543536828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN6868_c0_g1_4234_TPlot.pdf
TRINITY_DN6868_c0_g1:4424	si_a762	TRINITY_DN6868_c0_g1	4413	4434	4424	-29.70	-19.40	0.653198653198653	11	1-5,4434-4430;6-17,4428-4417	x-x,4429-4429[BULt];18-21,4416-4413[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	UUGACGGUCGGGAACCACGAAG&CUUUG-GGUUUUUGAUUGAUUC	4	0.999999999830839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN6868_c0_g1_4424_TPlot.pdf
TRINITY_DN6868_c0_g1:4600	si_a291	TRINITY_DN6868_c0_g1	4589	4609	4600	-27.70	-18.12	0.654151624548737	10.5	1-10,4609-4600;17-21,4593-4589	11-16,4599-4594[SIL]	(((((......((((((((((&))))))))))......)))))	GGAUCCUUCACAGAUCCGAGC&GCUUGGAUUUAAAAAAGAUUC	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN6868_c0_g1_4600_TPlot.pdf
TRINITY_DN6868_c0_g1:4626	si_a113	TRINITY_DN6868_c0_g1	4615	4635	4626	-26.20	-17.30	0.66030534351145	14	5-16,4631-4620	1-4,4635-4632[UP5];17-21,4619-4615[UP3]	.....((((((((((((....&....)))))))))))).....	UUUCUGGCAAGCUCGUGAGGU&AAAAUACGAGCUUGUUUUAUA	3	0.999998031553349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN6868_c0_g1_4626_TPlot.pdf
TRINITY_DN686_c0_g1:6577	si_a458	TRINITY_DN686_c0_g1	6566	6586	6577	-23.80	-18.40	0.773109243697479	8	2-16,6585-6571;18-20,6569-6567	1-1,6586-6586[UP5];17-17,6570-6570[SIL];21-21,6566-6566[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AACAAAUUAUGUGUGGCAGCU&UGUUGUUAUAUAUAAUAUGUA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN686_c0_g1_6577_TPlot.pdf
TRINITY_DN68709_c0_g1:232	si_s58	TRINITY_DN68709_c0_g1	222	241	232	-29.30	-20.10	0.686006825938567	8	2-12,240-230;14-18,229-225	1-1,241-241[UP5];13-13,x-x[BULq];19-21,224-222[UP3]	...(((((-(((((((((((.&.))))))))))).)))))...	UACAGGGG-UGCUGGCUUGAC&UUCAAGUUAGCAACUUCUAUU	1	0.0264997035145176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN68709_c0_g1_232_TPlot.pdf
TRINITY_DN6870_c0_g1:5635	si_s83	TRINITY_DN6870_c0_g1	5620	5644	5635	-30.90	-20.30	0.656957928802589	9	1-10,5644-5635;12-13,5632-5631;14-21,5627-5620	11-11,5634-5633[AILt];x-x,5630-5628[BULt]	((((((((...((..((((((((((&))))))))))-.))---))))))))	GGAGAAGAUCAAGUCAAGGGAAGAG&UUCUUUCCUU-UCU---UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6870_c0_g1_5635_TPlot.pdf
TRINITY_DN6870_c0_g1:6031	si_a770	TRINITY_DN6870_c0_g1	6018	6040	6031	-28.70	-19.90	0.693379790940767	12	4-12,6037-6029;13-21,6026-6018	1-3,6040-6038[UP5];x-x,6028-6027[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	GAAGAGUUGUUGAUCGAUUAUGG&UUUUGAUUGAUU--CAACUCUUC	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN6870_c0_g1_6031_TPlot.pdf
TRINITY_DN6871_c0_g1:11138	si_a758	TRINITY_DN6871_c0_g1	11127	11147	11138	-34.00	-23.70	0.697058823529412	7.5	1-15,11147-11133;17-21,11131-11127	16-16,11132-11132[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	CAGUCCGAGAUUUGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN6871_c0_g1_11138_TPlot.pdf
TRINITY_DN6871_c0_g1:11387	si_s639	TRINITY_DN6871_c0_g1	11376	11398	11387	-40.60	-26.60	0.655172413793103	12.5	1-2,11398-11397;4-6,11394-11392;7-17,11390-11380	3-3,11396-11395[AILt];x-x,11391-11391[BULt];18-21,11379-11376[UP3]	....(((((((((((.(((..((&))-.)))-)))))))))))....	CUCGCGGGGGCAAGCAGCCGCGC&GU-AGGC-GUUUGCCCUCGAUAC	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s639_TRINITY_DN6871_c0_g1_11387_TPlot.pdf
TRINITY_DN6871_c0_g1:11388	si_s638	TRINITY_DN6871_c0_g1	11377	11399	11388	-40.30	-28.30	0.702233250620347	11.5	1-3,11399-11397;5-7,11394-11392;8-18,11390-11380	4-4,11396-11395[AILt];x-x,11391-11391[BULt];19-21,11379-11377[UP3]	...(((((((((((.(((..(((&)))-.)))-)))))))))))...	UCGCGGGGGCAAGCAGCCGCGCG&CGU-AGGC-GUUUGCCCUCGAUA	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN6871_c0_g1_11388_TPlot.pdf
TRINITY_DN6871_c0_g1:11389	si_s637	TRINITY_DN6871_c0_g1	11378	11400	11389	-40.90	-28.30	0.691931540342298	11.5	2-4,11399-11397;6-8,11394-11392;9-19,11390-11380	1-1,11400-11400[UP5];5-5,11396-11395[AILt];x-x,11391-11391[BULt];20-21,11379-11378[UP3]	..(((((((((((.(((..(((.&.)))-.)))-)))))))))))..	CGCGGGGGCAAGCAGCCGCGCGU&UCGU-AGGC-GUUUGCCCUCGAU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN6871_c0_g1_11389_TPlot.pdf
TRINITY_DN6871_c0_g1:11399	si_s633	TRINITY_DN6871_c0_g1	11382	11408	11399	-37.90	-25.10	0.662269129287599	13	1-2,11408-11407;4-9,11405-11400;11-14,11398-11395;15-21,11388-11382	3-3,11406-11406[SIL];10-10,11399-11399[SIL];x-x,11394-11389[BULt]	(((((((......((((.((((((.((&)).)))))).))))------)))))))	GGGGCAAGCAGCCGCGCGUGCGGACAG&CUUUUCGUAGGCGU------UUGCCCU	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN6871_c0_g1_11399_TPlot.pdf
TRINITY_DN6871_c0_g1:11412	si_s371	TRINITY_DN6871_c0_g1	11402	11422	11412	-43.20	-29.10	0.673611111111111	8.5	2-5,11421-11418;7-14,11415-11408;16-21,11407-11402	1-1,11422-11422[UP5];6-6,11417-11416[AILt];15-15,x-x[BULq]	((((((-((((((((..((((.&.))))-.)))))))).))))))	CGGACA-GUGGGCGGGCCGGUG&AACCG-AUCGCUCGCGUGUCCG	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s371_TRINITY_DN6871_c0_g1_11412_TPlot.pdf
TRINITY_DN6871_c0_g1:11869	si_a802	TRINITY_DN6871_c0_g1	11858	11878	11869	-34.70	-22.90	0.659942363112392	7.5	3-6,11876-11873;8-17,11871-11862;19-20,11860-11859	1-2,11878-11877[UP5];7-7,11872-11872[SIL];18-18,11861-11861[SIL];21-21,11858-11858[UP3]	.((.((((((((((.((((..&..)))).)))))))))).)).	AUCAUCGUUUCGGAAUGGAUG&UUUCCAAUCCGAAGCGAAGAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a802_TRINITY_DN6871_c0_g1_11869_TPlot.pdf
TRINITY_DN6871_c0_g1:11875	si_a17	TRINITY_DN6871_c0_g1	11864	11884	11875	-24.30	-16.10	0.662551440329218	12	3-16,11882-11869	1-2,11884-11883[UP5];17-21,11868-11864[UP3]	.....((((((((((((((..&..)))))))))))))).....	GUUUCGGAAUGGAUGGGCUAC&AAAGCCUAUUUAUUUUUAGUU	2	0.999987640717283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN6871_c0_g1_11875_TPlot.pdf
TRINITY_DN6871_c0_g1:12419	si_a284	TRINITY_DN6871_c0_g1	12408	12428	12419	-28.30	-18.90	0.667844522968198	11	3-9,12426-12420;12-17,12417-12412	1-2,12428-12427[UP5];10-11,12419-12418[SIL];18-21,12411-12408[UP3]	....((((((..(((((((..&..)))))))..))))))....	CCAAAAAUCCUCGCGAUCUGG&AAAGAUCGCUUGGAUUUAAAA	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN6871_c0_g1_12419_TPlot.pdf
TRINITY_DN6871_c0_g1:12524	si_a521	TRINITY_DN6871_c0_g1	12513	12533	12524	-42.50	-29.20	0.687058823529412	6.5	2-4,12532-12530;6-11,12528-12523;13-21,12521-12513	1-1,12533-12533[UP5];5-5,12529-12529[SIL];12-12,12522-12522[SIL]	(((((((((.((((((.(((.&.))).)))))).)))))))))	GCUCGUGUGCCCGUCUGACAA&AUGUAAGGCGGACACGCGAGC	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a521_TRINITY_DN6871_c0_g1_12524_TPlot.pdf
TRINITY_DN6871_c0_g1:2634	si_a149	TRINITY_DN6871_c0_g1	2623	2643	2634	-29.40	-19.20	0.653061224489796	9.5	2-12,2642-2632;15-18,2629-2626	1-1,2643-2643[UP5];13-14,2631-2630[SIL];19-21,2625-2623[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	ACCGGCCAAAAGACAGCGACU&CGUUGUUGUUUUAAGGUCAAU	4	0.99999999839502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN6871_c0_g1_2634_TPlot.pdf
TRINITY_DN6871_c0_g1:2749	si_a496	TRINITY_DN6871_c0_g1	2737	2758	2749	-32.40	-24.10	0.743827160493827	8	3-18,2756-2741;19-21,2739-2737	1-2,2758-2757[UP5];x-x,2740-2740[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	AGGCGAGAUGGAAGACGACGGG&UAUGUCGUUUUUCGUCUU-CCU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN6871_c0_g1_2749_TPlot.pdf
TRINITY_DN6871_c0_g1:2750	si_a495	TRINITY_DN6871_c0_g1	2738	2759	2750	-31.90	-22.80	0.714733542319749	10.5	5-19,2755-2741;20-21,2739-2738	1-4,2759-2756[UP5];x-x,2740-2740[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	GGCGAGAUGGAAGACGACGGGA&AUAUGUCGUUUUUCGUCUU-CC	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN6871_c0_g1_2750_TPlot.pdf
TRINITY_DN6871_c0_g1:2752	si_a493	TRINITY_DN6871_c0_g1	2741	2761	2752	-29.50	-20.90	0.708474576271186	12.5	6-21,2756-2741	1-5,2761-2757[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAUGGAAGACGACGGGAGG&GAAUAUGUCGUUUUUCGUCUU	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN6871_c0_g1_2752_TPlot.pdf
TRINITY_DN6871_c0_g1:2753	si_a492	TRINITY_DN6871_c0_g1	2742	2762	2753	-30.20	-19.70	0.652317880794702	14.5	8-21,2755-2742	1-7,2762-2756[UP5]	((((((((((((((.......&.......))))))))))))))	AGAUGGAAGACGACGGGAGGC&AGAAUAUGUCGUUUUUCGUCU	3	0.999955530688011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN6871_c0_g1_2753_TPlot.pdf
TRINITY_DN6871_c0_g1:2764	si_s77	TRINITY_DN6871_c0_g1	2753	2773	2764	-25.50	-16.70	0.654901960784314	8.5	1-11,2773-2763;13-18,2761-2756;20-21,2754-2753	12-12,2762-2762[SIL];19-19,2755-2755[SIL]	((.((((((.(((((((((((&))))))))))).)))))).))	GACGGGAGGCAGGAGGAAGAG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6871_c0_g1_2764_TPlot.pdf
TRINITY_DN6871_c0_g1:2806	si_a201	TRINITY_DN6871_c0_g1	2795	2815	2806	-28.60	-19.80	0.692307692307692	8.5	1-4,2815-2812;6-15,2810-2801;17-19,2799-2797	5-5,2811-2811[SIL];16-16,2800-2800[SIL];20-21,2796-2795[UP3]	..(((.((((((((((.((((&)))).)))))))))).)))..	CCAGUGGGUUUGUUGGCGGAC&GUUCACUAAUAAAUCGACUAA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN6871_c0_g1_2806_TPlot.pdf
TRINITY_DN6871_c0_g1:2866	si_s8	TRINITY_DN6871_c0_g1	2855	2875	2866	-21.30	-14.00	0.657276995305164	6	2-6,2874-2870;8-10,2868-2866;12-21,2864-2855	1-1,2875-2875[UP5];7-7,2869-2869[SIL];11-11,2865-2865[SIL]	((((((((((.(((.(((((.&.))))).))).))))))))))	GAUAUAGUGACAAUUAGUAAA&AUUACUUAUUAUUACUAUAUU	3	0.999999861197202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN6871_c0_g1_2866_TPlot.pdf
TRINITY_DN6871_c0_g1:3295	si_s79	TRINITY_DN6871_c0_g1	3284	3304	3295	-26.20	-21.10	0.805343511450382	8	1-7,3304-3298;10-19,3295-3286	8-9,3297-3296[SIL];20-21,3285-3284[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	GCGAAGGAGGGAUUGAAAGAA&UUUUUUCUUUCCUUUCUUCUU	2	0.998270602251896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6871_c0_g1_3295_TPlot.pdf
TRINITY_DN6871_c0_g1:3296	si_s78	TRINITY_DN6871_c0_g1	3285	3305	3296	-26.20	-22.00	0.83969465648855	7	1-8,3305-3298;11-20,3295-3286	9-10,3297-3296[SIL];21-21,3285-3285[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	CGAAGGAGGGAUUGAAAGAAA&UUUUUUUCUUUCCUUUCUUCU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6871_c0_g1_3296_TPlot.pdf
TRINITY_DN6871_c0_g1:3297	si_s77	TRINITY_DN6871_c0_g1	3286	3306	3297	-25.50	-21.90	0.858823529411765	7	2-9,3305-3298;12-21,3295-3286	1-1,3306-3306[UP5];10-11,3297-3296[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	GAAGGAGGGAUUGAAAGAAAG&UUUUUUUUCUUUCCUUUCUUC	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6871_c0_g1_3297_TPlot.pdf
TRINITY_DN6871_c0_g1:3299	si_s75	TRINITY_DN6871_c0_g1	3288	3308	3299	-24.00	-17.70	0.7375	10	4-11,3305-3298;14-21,3295-3288	1-3,3308-3306[UP5];12-13,3297-3296[SIL]	((((((((..((((((((...&...))))))))..))))))))	AGGAGGGAUUGAAAGAAAGAG&UAUUUUUUUUCUUUCCUUUCU	2	0.999999992392381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6871_c0_g1_3299_TPlot.pdf
TRINITY_DN6871_c0_g1:3300	si_s74	TRINITY_DN6871_c0_g1	3289	3308	3300	-25.00	-17.20	0.688	7	1-2,3308-3307;4-12,3306-3298;15-21,3295-3289	3-3,x-x[BULq];13-14,3297-3296[SIL]	(((((((..(((((((((-((&)).)))))))))..)))))))	GGAGGGAUUGAAAGAAAG-AG&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6871_c0_g1_3300_TPlot.pdf
TRINITY_DN6871_c0_g1:3301	si_s86	TRINITY_DN6871_c0_g1	3283	3311	3301	-32.90	-22.20	0.674772036474164	18	1-4,3311-3308;5-10,3306-3301;11-21,3293-3283	x-x,3307-3307[BULt];x-x,3300-3294[BULt]	(((((((((((.......((((((.((((&))))-))))))-------)))))))))))	GGCGAAGGAGGGAUUGAAAGAAAGAGAAA&UUUC-CUUUCU-------UCUUCUUCGCU	2	0.999999999981125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN6871_c0_g1_3301_TPlot.pdf
TRINITY_DN6871_c0_g1:3302	si_s72	TRINITY_DN6871_c0_g1	3291	3310	3302	-24.10	-16.10	0.66804979253112	6.5	1-4,3310-3307;6-14,3306-3298;17-21,3295-3291	5-5,x-x[BULq];15-16,3297-3296[SIL]	(((((..(((((((((-((((&)))).)))))))))..)))))	AGGGAUUGAAAGAAAG-AGAA&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6871_c0_g1_3302_TPlot.pdf
TRINITY_DN6871_c0_g1:3318	si_a785	TRINITY_DN6871_c0_g1	3308	3327	3318	-25.90	-17.10	0.66023166023166	6	1-7,3327-3321;9-15,3319-3313;17-21,3312-3308	8-8,3320-3320[SIL];16-16,x-x[BULq]	(((((-(((((((.(((((((&))))))).))))))).)))))	GAAAA-AGAGAGAGAGAAGGG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6871_c0_g1_3318_TPlot.pdf
TRINITY_DN6871_c0_g1:3374	si_s375	TRINITY_DN6871_c0_g1	3362	3382	3374	-44.10	-29.80	0.675736961451247	8.5	1-5,3382-3378;7-10,3377-3374;11-12,3372-3371;14-21,3369-3362	6-6,x-x[BULq];x-x,3373-3373[BULt];13-13,3370-3370[SIL]	((((((((.((.((((-(((((&))))).))))-)).))))))))	GAGGCGGAGGCGGUGA-CGGUC&GAUCGCUCGC-GUGUCCGCCUU	4	0.997213788032621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN6871_c0_g1_3374_TPlot.pdf
TRINITY_DN6871_c0_g1:8047	si_a497	TRINITY_DN6871_c0_g1	8036	8056	8047	-32.00	-21.28	0.665	11	1-7,8056-8050;11-15,8046-8042;17-19,8040-8038	8-10,8049-8047[SIL];16-16,8041-8041[SIL];20-21,8037-8036[UP3]	..(((.(((((...(((((((&)))))))...))))).)))..	AUGGAUGACGAUCUGCGGCAU&AUGUCGUUUUUCGUCUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6871_c0_g1_8047_TPlot.pdf
TRINITY_DN6871_c0_g1:9682	si_s77	TRINITY_DN6871_c0_g1	9670	9691	9682	-25.50	-17.90	0.701960784313725	4.5	1-12,9691-9680;14-21,9677-9670	13-13,9679-9678[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	GAAGAAAGACAAAGAAAAGAAG&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6871_c0_g1_9682_TPlot.pdf
TRINITY_DN6872_c0_g1:1196	si_a699	TRINITY_DN6872_c0_g1	1185	1205	1196	-33.60	-23.60	0.702380952380952	10.5	5-18,1201-1188	1-4,1205-1202[UP5];19-21,1187-1185[UP3]	...((((((((((((((....&....))))))))))))))...	UACGGAGUGUACCAGUUCAAG&ACACAACUGGUACAUUCCAAA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a699_TRINITY_DN6872_c0_g1_1196_TPlot.pdf
TRINITY_DN6872_c0_g1:1198	si_a697	TRINITY_DN6872_c0_g1	1187	1207	1198	-35.50	-23.60	0.664788732394366	12.5	7-20,1201-1188	1-6,1207-1202[UP5];21-21,1187-1187[UP3]	.((((((((((((((......&......)))))))))))))).	CGGAGUGUACCAGUUCAAGGU&GAACACAACUGGUACAUUCCA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN6872_c0_g1_1198_TPlot.pdf
TRINITY_DN6872_c0_g1:30	si_s45	TRINITY_DN6872_c0_g1	19	41	30	-24.70	-17.40	0.704453441295547	8	1-8,41-34;9-18,31-22;20-21,20-19	x-x,33-32[BULt];19-19,21-21[SIL]	((.((((((((((..((((((((&))))))))--)))))))))).))	AAGUUGAAAUCCGCUGUUGUUAA&UUAAUAAU--UGGAUUUCAAGUU	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN6872_c0_g1_30_TPlot.pdf
TRINITY_DN6872_c0_g1:31	si_s44	TRINITY_DN6872_c0_g1	20	42	31	-24.70	-16.70	0.676113360323887	9	2-9,41-34;10-19,31-22;21-21,20-20	1-1,42-42[UP5];x-x,33-32[BULt];20-20,21-21[SIL]	(.((((((((((..((((((((.&.))))))))--)))))))))).)	AGUUGAAAUCCGCUGUUGUUAAG&UUUAAUAAU--UGGAUUUCAAGU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN6872_c0_g1_31_TPlot.pdf
TRINITY_DN6872_c0_g1:34	si_s43	TRINITY_DN6872_c0_g1	21	43	34	-25.50	-16.70	0.654901960784314	10	2-10,42-34;11-20,31-22	1-1,43-43[UP5];x-x,33-32[BULt];21-21,21-21[UP3]	.((((((((((..(((((((((.&.)))))))))--)))))))))).	GUUGAAAUCCGCUGUUGUUAAGA&CUUUAAUAAU--UGGAUUUCAAG	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN6872_c0_g1_34_TPlot.pdf
TRINITY_DN6873_c0_g1:749	si_s76	TRINITY_DN6873_c0_g1	733	758	749	-23.60	-15.50	0.656779661016949	15	3-10,756-749;11-21,743-733	1-2,758-757[UP5];x-x,748-744[BULt]	(((((((((((.....((((((((..&..))))))))-----)))))))))))	AAGAAAGGAAAAUGAUGGGAAAAAUU&AUUUUUUUUC-----UUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6873_c0_g1_749_TPlot.pdf
TRINITY_DN6874_c0_g1:1012	si_a23	TRINITY_DN6874_c0_g1	1001	1021	1012	-22.80	-16.70	0.732456140350877	15.5	8-21,1014-1001	1-7,1021-1015[UP5]	((((((((((((((.......&.......))))))))))))))	UCUUAGAGCUGGAAGACCUUG&UAUUUAUUUUUAGUUCUAAGA	2	0.829215565427259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN6874_c0_g1_1012_TPlot.pdf
TRINITY_DN6874_c0_g1:214	si_s669	TRINITY_DN6874_c0_g1	192	223	214	-26.90	-17.90	0.66542750929368	27.5	2-11,222-213;12-20,201-193	1-1,223-223[UP5];x-x,212-202[BULt];21-21,192-192[UP3]	.(((((((((...........((((((((((.&.))))))))))-----------))))))))).	AGUUUCUGUGUUUGUCAUGAGGUCGAUUCGAA&AUCGAAUUGAU-----------UAUAGAAACA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s669_TRINITY_DN6874_c0_g1_214_TPlot.pdf
TRINITY_DN6875_c0_g1:886	si_s80	TRINITY_DN6875_c0_g1	874	898	886	-28.20	-19.30	0.684397163120567	11	3-7,896-892;8-14,888-882;15-21,880-874	1-2,898-897[UP5];x-x,891-889[BULt];x-x,881-881[BULt]	(((((((.(((((((...(((((..&..)))))---)))))))-)))))))	GAAGAAGAAAAGGAACUUAGAGAUG&UUUUUCU---UUCCUUU-CUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN6875_c0_g1_886_TPlot.pdf
TRINITY_DN6877_c0_g1:3819	si_s501	TRINITY_DN6877_c0_g1	3808	3831	3819	-22.60	-14.80	0.654867256637168	13.5	1-7,3831-3825;11-21,3818-3808	8-10,3824-3819[AILt]	(((((((((((......(((((((&)))))))---...)))))))))))	AUAUAGAGUUGGUACACUGUUUGU&AUAAACA---AAACAAUUCUAUAU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s501_TRINITY_DN6877_c0_g1_3819_TPlot.pdf
TRINITY_DN68782_c0_g1:206	si_s191	TRINITY_DN68782_c0_g1	195	215	206	-26.60	-18.20	0.684210526315789	8.5	3-18,213-198	1-2,215-214[UP5];19-21,197-195[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUGAUUCCGGAAUAAUUGUAA&UAACGAUUAUUUUGGAAUGUA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN68782_c0_g1_206_TPlot.pdf
TRINITY_DN68782_c0_g1:207	si_s190	TRINITY_DN68782_c0_g1	196	216	207	-28.00	-19.40	0.692857142857143	6	1-2,216-215;4-19,213-198	3-3,214-214[SIL];20-21,197-196[UP3]	..((((((((((((((((.((&)).))))))))))))))))..	UGAUUCCGGAAUAAUUGUAAC&GUAACGAUUAUUUUGGAAUGU	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN68782_c0_g1_207_TPlot.pdf
TRINITY_DN68782_c0_g1:456	si_a128	TRINITY_DN68782_c0_g1	445	465	456	-23.20	-15.20	0.655172413793103	12	5-16,461-450	1-4,465-462[UP5];17-21,449-445[UP3]	.....((((((((((((....&....)))))))))))).....	AAAACUUACUAUUGCUAAAUA&UUUAUAGCAAUAGUAAUUAAU	3	0.999877636957263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN68782_c0_g1_456_TPlot.pdf
TRINITY_DN68782_c0_g1:503	si_a544	TRINITY_DN68782_c0_g1	493	512	503	-28.90	-20.10	0.695501730103806	8	2-12,511-501;15-18,499-496	1-1,512-512[UP5];13-14,500-500[AILq];19-21,495-493[UP3]	...((((.-(((((((((((.&.)))))))))))..))))...	GGCAGAAG-GGAUUGAGCCGG&UCGGUUCAAUCUAUUUCUUUA	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN68782_c0_g1_503_TPlot.pdf
TRINITY_DN68782_c0_g1:504	si_a543	TRINITY_DN68782_c0_g1	494	513	504	-28.70	-20.10	0.700348432055749	8.5	3-13,511-501;16-19,499-496	1-2,513-512[UP5];14-15,500-500[AILq];20-21,495-494[UP3]	..((((.-(((((((((((..&..)))))))))))..))))..	GCAGAAG-GGAUUGAGCCGGA&AUCGGUUCAAUCUAUUUCUUU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN68782_c0_g1_504_TPlot.pdf
TRINITY_DN687_c0_g1:13133	si_s834	TRINITY_DN687_c0_g1	13122	13142	13133	-26.70	-17.70	0.662921348314607	8	4-14,13139-13129;16-20,13127-13123	1-3,13142-13140[UP5];15-15,13128-13128[SIL];21-21,13122-13122[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	AGCUUCCUUUAAAUUGUUGUG&AAAAACAAUUUGAAAGAAGCG	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s834_TRINITY_DN687_c0_g1_13133_TPlot.pdf
TRINITY_DN687_c0_g1:4759	si_s795	TRINITY_DN687_c0_g1	4748	4770	4759	-30.30	-20.40	0.673267326732673	10.5	3-4,4768-4767;5-13,4764-4756;15-21,4754-4748	1-2,4770-4769[UP5];x-x,4766-4765[BULt];14-14,4755-4755[SIL]	(((((((.(((((((((..((..&..))--))))))))).)))))))	GCGAGGAGGAAGUACGACGGCGU&AAGC--UCGUAUUUUAUCUUCGU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN687_c0_g1_4759_TPlot.pdf
TRINITY_DN687_c0_g1:4876	si_a283	TRINITY_DN687_c0_g1	4865	4885	4876	-28.30	-19.20	0.678445229681979	13	5-16,4881-4870	1-4,4885-4882[UP5];17-21,4869-4865[UP3]	.....((((((((((((....&....)))))))))))).....	CGAACAUCCAAGUGAUCAUCU&AAAAGAUCGCUUGGAUUUAAA	4	0.999027686849393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a283_TRINITY_DN687_c0_g1_4876_TPlot.pdf
TRINITY_DN6881_c0_g1:1883	si_a636	TRINITY_DN6881_c0_g1	1874	1890	1883	-26.30	-17.70	0.673003802281369	9	1-8,1890-1883;13-20,1882-1875	9-12,x-x[BULq];21-21,1874-1874[UP3]	.((((((((----((((((((&))))))))....)))))))).	AAUUACUCA----AAUCGACA&UGUCGAUUUUUUUGAGUAAUA	3	0.99999988890655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN6881_c0_g1_1883_TPlot.pdf
TRINITY_DN6881_c0_g1:31	si_s609	TRINITY_DN6881_c0_g1	20	42	31	-27.70	-19.20	0.693140794223827	10	1-7,42-36;9-17,32-24;19-21,22-20	8-8,35-33[AILt];18-18,23-23[SIL]	(((.(((((((((...(((((((&)))))))--.))))))))).)))	GCUGGGAUUUGAACCCGGGAUUC&GAAUCUU--UUUUAAAUCCAAGC	3	0.805971989417716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN6881_c0_g1_31_TPlot.pdf
TRINITY_DN6882_c2_g1:621	si_a360	TRINITY_DN6882_c2_g1	610	630	621	-29.10	-21.50	0.738831615120275	8.5	2-8,629-623;10-20,621-611	1-1,630-630[UP5];9-9,622-622[SIL];21-21,610-610[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	AUUGGUCCGAUUUGAAUGGGG&UUCUAUUUUGAUCGGAUCAAA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN6882_c2_g1_621_TPlot.pdf
TRINITY_DN6884_c0_g1:365	si_s172	TRINITY_DN6884_c0_g1	353	375	365	-40.30	-27.40	0.679900744416873	7	1-7,375-369;9-14,366-361;15-17,359-357;19-21,355-353	8-8,368-367[AILt];x-x,360-360[BULt];18-18,356-356[SIL]	(((.(((.((((((..(((((((&)))))))-.))))))-))).)))	UACCCGGCGCAUCUCGUGCCCCU&AGGGGUA-AAGAUGC-CCGAGUA	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s172_TRINITY_DN6884_c0_g1_365_TPlot.pdf
TRINITY_DN6884_c0_g1:3915	si_s827	TRINITY_DN6884_c0_g1	3901	3924	3915	-21.90	-14.40	0.657534246575343	7	1-11,3924-3914;12-18,3911-3905;19-21,3903-3901	x-x,3913-3912[BULt];x-x,3904-3904[BULt]	(((.(((((((..(((((((((((&)))))))))))--)))))))-)))	UUCAAAAUUGUCAUUUUCGUUGUU&AAUAAUGAAAA--ACAAUUU-GAA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s827_TRINITY_DN6884_c0_g1_3915_TPlot.pdf
TRINITY_DN6884_c0_g1:486	si_s637	TRINITY_DN6884_c0_g1	475	495	486	-40.90	-26.80	0.655256723716381	6	1-4,495-492;6-8,490-488;10-17,486-479;19-21,477-475	5-5,491-491[SIL];9-9,487-487[SIL];18-18,478-478[SIL]	(((.((((((((.(((.((((&)))).))).)))))))).)))	AUCCAGGGCAAAGGCCAAUGA&UCGUAGGCGUUUGCCCUCGAU	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN6884_c0_g1_486_TPlot.pdf
TRINITY_DN6884_c0_g1:489	si_s634	TRINITY_DN6884_c0_g1	478	498	489	-38.30	-25.20	0.657963446475196	9	3-7,496-492;9-11,490-488;13-20,486-479	1-2,498-497[UP5];8-8,491-491[SIL];12-12,487-487[SIL];21-21,478-478[UP3]	.((((((((.(((.(((((..&..))))).))).)))))))).	CAGGGCAAAGGCCAAUGAACU&UUUUCGUAGGCGUUUGCCCUC	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN6884_c0_g1_489_TPlot.pdf
TRINITY_DN6884_c0_g1:490	si_s633	TRINITY_DN6884_c0_g1	479	500	490	-37.90	-25.50	0.672823218997362	8	1-2,500-499;4-8,496-492;10-12,490-488;14-21,486-479	3-3,498-497[AILt];9-9,491-491[SIL];13-13,487-487[SIL]	((((((((.(((.(((((..((&))-.))))).))).))))))))	AGGGCAAAGGCCAAUGAACUAG&CU-UUUCGUAGGCGUUUGCCCU	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN6884_c0_g1_490_TPlot.pdf
TRINITY_DN6886_c0_g1:5972	si_s520	TRINITY_DN6886_c0_g1	5962	5981	5972	-24.00	-18.40	0.766666666666667	3.5	1-15,5981-5967;17-21,5966-5962	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	GAAUG-UUUUGAAUUAGGAAU&AUUCUUAAUUCGAAAUCAUUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN6886_c0_g1_5972_TPlot.pdf
TRINITY_DN6886_c0_g1:5973	si_s519	TRINITY_DN6886_c0_g1	5963	5982	5973	-24.40	-17.90	0.733606557377049	3	1-16,5982-5967;18-21,5966-5963	17-17,x-x[BULq]	((((-((((((((((((((((&)))))))))))))))).))))	AAUG-UUUUGAAUUAGGAAUG&UAUUCUUAAUUCGAAAUCAUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN6886_c0_g1_5973_TPlot.pdf
TRINITY_DN6886_c0_g3:1046	si_a288	TRINITY_DN6886_c0_g3	1035	1055	1046	-28.20	-19.00	0.673758865248227	8	2-10,1054-1046;13-19,1043-1037	1-1,1055-1055[UP5];11-12,1045-1044[SIL];20-21,1036-1035[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	AUUUUUUUAUUUCCAAGUGAA&AUCGCUUGGAUUUAAAAAAGA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN6886_c0_g3_1046_TPlot.pdf
TRINITY_DN6886_c1_g1:1167	si_a317	TRINITY_DN6886_c1_g1	1156	1175	1167	-24.30	-16.10	0.662551440329218	8	4-9,1172-1167;11-21,1166-1156	1-3,1175-1173[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	UGAAAGAAUCA-GGAUAACCA&GAUUUAUCCAUGAUUUUUUUA	2	0.999995866409828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN6886_c1_g1_1167_TPlot.pdf
TRINITY_DN688_c0_g1:1336	si_s829	TRINITY_DN688_c0_g1	1325	1345	1336	-23.30	-16.50	0.708154506437768	10	5-18,1341-1328	1-4,1345-1342[UP5];19-21,1327-1325[UP3]	...((((((((((((((....&....))))))))))))))...	UUCUCAAAUUGUUUUUCGAAA&UAAUGAAAAACAAUUUGAAAG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s829_TRINITY_DN688_c0_g1_1336_TPlot.pdf
TRINITY_DN68919_c0_g1:173	si_s82	TRINITY_DN68919_c0_g1	163	182	173	-28.90	-19.10	0.660899653979239	8	3-5,180-178;7-14,176-169;16-21,168-163	1-2,182-181[UP5];6-6,177-177[SIL];15-15,x-x[BULq]	((((((-((((((((.(((..&..))).)))))))).))))))	AAGAAG-AGAAAGGAUGGGUC&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN68919_c0_g1_173_TPlot.pdf
TRINITY_DN68935_c0_g1:142	si_a551	TRINITY_DN68935_c0_g1	131	152	142	-31.60	-21.30	0.674050632911392	11.5	3-7,150-146;9-10,143-142;12-21,140-131	1-2,152-151[UP5];8-8,145-144[AILt];11-11,141-141[SIL]	((((((((((.((..(((((..&..)))))-.)).))))))))))	GGGGAGAUGGUGAUUAUGGAAA&AAUCUAU-UUCUUUAUCUCCCC	4	0.999047551949885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN68935_c0_g1_142_TPlot.pdf
TRINITY_DN68935_c0_g1:149	si_a227	TRINITY_DN68935_c0_g1	138	158	149	-26.80	-18.40	0.686567164179104	9	1-4,158-155;7-18,152-141	5-6,154-153[SIL];19-21,140-138[UP3]	...((((((((((((..((((&))))..))))))))))))...	UGGUGAUUAUGGAAAAUUGGG&CUCAUGUUUCUAUAAUCAAUU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN68935_c0_g1_149_TPlot.pdf
TRINITY_DN68935_c0_g1:150	si_a226	TRINITY_DN68935_c0_g1	139	159	150	-27.60	-18.60	0.673913043478261	9	2-5,158-155;8-19,152-141	1-1,159-159[UP5];6-7,154-153[SIL];20-21,140-139[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	GGUGAUUAUGGAAAAUUGGGG&ACUCAUGUUUCUAUAAUCAAU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN68935_c0_g1_150_TPlot.pdf
TRINITY_DN6895_c0_g1:1662	si_s84	TRINITY_DN6895_c0_g1	1651	1670	1662	-32.30	-22.80	0.705882352941177	7	1-3,1670-1668;5-7,1666-1664;10-21,1662-1651	4-4,1667-1667[SIL];8-9,1663-1663[AILq]	((((((((((((.-(((.(((&))).)))..))))))))))))	CGAGGAGGAAGAC-GGACAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999999999350511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN6895_c0_g1_1662_TPlot.pdf
TRINITY_DN6896_c0_g1:1206	si_a656	TRINITY_DN6896_c0_g1	1195	1216	1206	-33.80	-24.30	0.718934911242604	6.5	1-3,1216-1214;5-9,1212-1208;10-21,1206-1195	4-4,1213-1213[SIL];x-x,1207-1207[BULt]	((((((((((((.(((((.(((&))).)))))-))))))))))))	UUAGUGGGCAUUGUCCCGUUGU&AUAUCGGGA-AAUGCCUAUUGA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN6896_c0_g1_1206_TPlot.pdf
TRINITY_DN68987_c0_g1:14	si_s76	TRINITY_DN68987_c0_g1	3	23	14	-23.60	-16.70	0.707627118644068	15.5	8-20,16-4	1-7,23-17[UP5];21-21,3-3[UP3]	.(((((((((((((.......&.......))))))))))))).	CAGAAGGGAAAGGACUCCAAG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN68987_c0_g1_14_TPlot.pdf
TRINITY_DN68987_c0_g1:16	si_s74	TRINITY_DN68987_c0_g1	5	30	16	-25.00	-16.40	0.656	13.5	1-3,30-28;4-9,26-21;10-21,16-5	x-x,27-27[BULt];x-x,20-17[BULt]	((((((((((((....((((((.(((&)))-))))))----))))))))))))	GAAGGGAAAGGACUCCAAGAAACUGG&CUA-UUUUUU----UUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN68987_c0_g1_16_TPlot.pdf
TRINITY_DN68987_c0_g1:176	si_s251	TRINITY_DN68987_c0_g1	165	186	176	-32.90	-21.40	0.650455927051672	6	1-5,186-182;7-8,180-179;9-14,177-172;16-21,170-165	6-6,181-181[SIL];x-x,178-178[BULt];15-15,171-171[SIL]	((((((.((((((.((.(((((&))))).))-)))))).))))))	GAGUGGGAUAUCGAGGCAAUGC&GCAUUUCC-CGAUAUAUUACUC	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s251_TRINITY_DN68987_c0_g1_176_TPlot.pdf
TRINITY_DN68987_c0_g1:177	si_s250	TRINITY_DN68987_c0_g1	166	187	177	-33.30	-22.10	0.663663663663664	6	1-6,187-182;8-9,180-179;10-15,177-172;17-21,170-166	7-7,181-181[SIL];x-x,178-178[BULt];16-16,171-171[SIL]	(((((.((((((.((.((((((&)))))).))-)))))).)))))	AGUGGGAUAUCGAGGCAAUGCC&GGCAUUUCC-CGAUAUAUUACU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN68987_c0_g1_177_TPlot.pdf
TRINITY_DN68987_c0_g1:222	si_a551	TRINITY_DN68987_c0_g1	210	230	222	-31.60	-20.62	0.65253164556962	10	1-5,230-226;7-10,225-222;14-21,217-210	6-6,x-x[BULq];11-13,221-218[AILt]	((((((((....((((-(((((&))))).))))-...))))))))	GGGGAGAUUAUUGAGA-AGAUU&AAUCUAUUUC-UUUAUCUCCCC	3	0.999979395023738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN68987_c0_g1_222_TPlot.pdf
TRINITY_DN68988_c0_g1:281	si_a885	TRINITY_DN68988_c0_g1	270	291	281	-25.60	-16.90	0.66015625	9	2-7,290-285;9-15,282-276;17-21,274-270	1-1,291-291[UP5];8-8,284-283[AILt];16-16,275-275[SIL]	(((((.(((((((..((((((.&.))))))-.))))))).)))))	AUUGUGGCUGUAUCGGGUUGCG&UGCAAUC-AAUAUAGUAAUAAU	2	0.858300316623363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a885_TRINITY_DN68988_c0_g1_281_TPlot.pdf
TRINITY_DN68988_c0_g1:282	si_a884	TRINITY_DN68988_c0_g1	271	292	282	-25.60	-17.00	0.6640625	8.5	1-8,292-285;10-16,282-276;18-21,274-271	9-9,284-283[AILt];17-17,275-275[SIL]	((((.(((((((..((((((((&))))))))-.))))))).))))	UUGUGGCUGUAUCGGGUUGCGA&UUGCAAUC-AAUAUAGUAAUAA	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN68988_c0_g1_282_TPlot.pdf
TRINITY_DN69001_c0_g1:341	si_s201	TRINITY_DN69001_c0_g1	329	350	341	-33.60	-23.60	0.702380952380952	5	1-12,350-339;13-16,337-334;19-21,331-329	x-x,338-338[BULt];17-18,333-332[SIL]	(((..((((.((((((((((((&))))))))))))-))))..)))	ACAAUGCUGUGUACAUUCCAAG&UUUGGAAUGUAC-CAGUUGUGU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN69001_c0_g1_341_TPlot.pdf
TRINITY_DN69008_c0_g1:309	si_s431	TRINITY_DN69008_c0_g1	298	317	309	-21.10	-15.10	0.71563981042654	7.5	3-6,315-312;8-21,311-298	1-2,317-316[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GUGGUAUGUAAUUG-UGUUUG&AUAACAAUAAUUACAUAUUAU	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN69008_c0_g1_309_TPlot.pdf
TRINITY_DN6900_c0_g1:496	si_s188	TRINITY_DN6900_c0_g1	484	505	496	-28.20	-19.00	0.673758865248227	5	1-6,505-500;8-16,498-490;17-19,488-486	7-7,499-499[SIL];x-x,489-489[BULt];20-21,485-484[UP3]	..(((.(((((((((.((((((&)))))).)))))))))-)))..	UCUCCAAAAAUAAUCAUUACUC&GAGUAACGAUUAUUUU-GGAAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN6900_c0_g1_496_TPlot.pdf
TRINITY_DN69010_c0_g1:22	si_a404	TRINITY_DN69010_c0_g1	11	32	22	-21.70	-17.50	0.806451612903226	6.5	1-6,32-27;7-19,25-13	x-x,26-26[BULt];20-21,12-11[UP3]	..(((((((((((((.((((((&))))))-)))))))))))))..	CCAAUAUGAACGAAACCAGUUC&GAAUUG-UUUUGUUUAUAUUUA	1	0.0168576080930685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN69010_c0_g1_22_TPlot.pdf
TRINITY_DN69029_c0_g1:530	si_s812	TRINITY_DN69029_c0_g1	518	539	530	-26.40	-18.30	0.693181818181818	9.5	1-12,539-528;13-15,526-524	x-x,527-527[BULt];16-21,523-518[UP3]	......(((.((((((((((((&))))))))))))-)))......	AAAAUAGAGAAGAAGGUAACGA&UCGUUACCUUUU-CUUAAUAAU	1	0.0602033517216705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN69029_c0_g1_530_TPlot.pdf
TRINITY_DN69029_c0_g1:531	si_s811	TRINITY_DN69029_c0_g1	519	540	531	-26.40	-19.20	0.727272727272727	7.5	1-13,540-528;14-16,526-524	x-x,527-527[BULt];17-21,523-519[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	AAAUAGAGAAGAAGGUAACGAA&UUCGUUACCUUUU-CUUAAUAA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN69029_c0_g1_531_TPlot.pdf
TRINITY_DN69029_c0_g1:532	si_s810	TRINITY_DN69029_c0_g1	520	541	532	-27.90	-19.40	0.695340501792115	7	2-14,540-528;15-17,526-524	1-1,541-541[UP5];x-x,527-527[BULt];18-21,523-520[UP3]	....(((.(((((((((((((.&.)))))))))))))-)))....	AAUAGAGAAGAAGGUAACGAAA&CUUCGUUACCUUUU-CUUAAUA	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN69029_c0_g1_532_TPlot.pdf
TRINITY_DN6903_c0_g1:130	si_s1	TRINITY_DN6903_c0_g1	119	139	130	-18.70	-12.60	0.67379679144385	10	3-16,137-124	1-2,139-138[UP5];17-21,123-119[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUAUAUAAGUAAUGUGAACC&UUUUUAUAUUACUUAUUAUUA	4	0.99999999567702	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN6903_c0_g1_130_TPlot.pdf
TRINITY_DN6903_c0_g1:3212	si_s309	TRINITY_DN6903_c0_g1	3201	3221	3212	-33.80	-24.60	0.727810650887574	8	1-5,3221-3217;8-20,3214-3202	6-7,3216-3215[SIL];21-21,3201-3201[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	AGAGAGGGAUGGAACAUUCGC&GCGAAAAUUCUGUCCUUCUUG	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN6903_c0_g1_3212_TPlot.pdf
TRINITY_DN69054_c0_g1:327	si_a788	TRINITY_DN69054_c0_g1	316	336	327	-24.80	-18.90	0.762096774193548	7	2-18,335-319	1-1,336-336[UP5];19-21,318-316[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUAGAAAAUAGGGAGAUAGAU&UUCUAUUUUUCUAUUUUCCAA	3	0.989049618865048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN69054_c0_g1_327_TPlot.pdf
TRINITY_DN69054_c0_g1:328	si_a787	TRINITY_DN69054_c0_g1	317	337	328	-26.30	-18.90	0.718631178707224	8	3-19,335-319	1-2,337-336[UP5];20-21,318-317[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAGAAAAUAGGGAGAUAGAUA&CUUCUAUUUUUCUAUUUUCCA	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN69054_c0_g1_328_TPlot.pdf
TRINITY_DN69054_c0_g1:329	si_a786	TRINITY_DN69054_c0_g1	318	338	329	-26.60	-18.90	0.710526315789474	9	4-20,335-319	1-3,338-336[UP5];21-21,318-318[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGAAAAUAGGGAGAUAGAUAA&UCUUCUAUUUUUCUAUUUUCC	2	0.999384461095691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN69054_c0_g1_329_TPlot.pdf
TRINITY_DN69054_c0_g1:330	si_a785	TRINITY_DN69054_c0_g1	319	341	330	-25.90	-21.60	0.833976833976834	7.5	1-4,341-338;5-21,335-319	x-x,337-336[BULt]	(((((((((((((((((..((((&))))--)))))))))))))))))	GAAAAUAGGGAGAUAGAUAAGGG&CUCU--UCUAUUUUUCUAUUUUC	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN69054_c0_g1_330_TPlot.pdf
TRINITY_DN69054_c0_g1:331	si_a784	TRINITY_DN69054_c0_g1	320	342	331	-24.70	-18.40	0.744939271255061	8	2-5,341-338;6-21,335-320	1-1,342-342[UP5];x-x,337-336[BULt]	((((((((((((((((..((((.&.))))--))))))))))))))))	AAAAUAGGGAGAUAGAUAAGGGA&ACUCU--UCUAUUUUUCUAUUUU	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN69054_c0_g1_331_TPlot.pdf
TRINITY_DN6909_c0_g1:1275	si_s586	TRINITY_DN6909_c0_g1	1264	1284	1275	-27.10	-17.80	0.656826568265683	12	5-19,1280-1266	1-4,1284-1281[UP5];20-21,1265-1264[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAGGAUUUAUUUAUGGUAUCA&AAAAAUCAUGGAUAAAUCCAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s586_TRINITY_DN6909_c0_g1_1275_TPlot.pdf
TRINITY_DN6909_c0_g1:1276	si_s585	TRINITY_DN6909_c0_g1	1265	1285	1276	-27.00	-17.80	0.659259259259259	13	6-20,1280-1266	1-5,1285-1281[UP5];21-21,1265-1265[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGGAUUUAUUUAUGGUAUCAU&AAAAAAUCAUGGAUAAAUCCA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN6909_c0_g1_1276_TPlot.pdf
TRINITY_DN6909_c0_g1:2703	si_a639	TRINITY_DN6909_c0_g1	2692	2712	2703	-23.60	-17.20	0.728813559322034	7	1-4,2712-2709;6-17,2707-2696	5-5,2708-2708[SIL];18-21,2695-2692[UP3]	....((((((((((((.((((&)))).))))))))))))....	ACAAAUUACUCAAAAAUGUCG&CGAUUUUUUUGAGUAAUAUAU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN6909_c0_g1_2703_TPlot.pdf
TRINITY_DN6909_c0_g1:2704	si_a638	TRINITY_DN6909_c0_g1	2693	2713	2704	-24.40	-17.20	0.704918032786885	7	2-5,2712-2709;7-18,2707-2696	1-1,2713-2713[UP5];6-6,2708-2708[SIL];19-21,2695-2693[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	CAAAUUACUCAAAAAUGUCGC&UCGAUUUUUUUGAGUAAUAUA	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN6909_c0_g1_2704_TPlot.pdf
TRINITY_DN6909_c0_g1:2705	si_a637	TRINITY_DN6909_c0_g1	2694	2714	2705	-25.80	-17.60	0.682170542635659	7	1-1,2714-2714;3-6,2712-2709;8-19,2707-2696	2-2,2713-2713[SIL];7-7,2708-2708[SIL];20-21,2695-2694[UP3]	..((((((((((((.((((.(&).)))).))))))))))))..	AAAUUACUCAAAAAUGUCGCC&GUCGAUUUUUUUGAGUAAUAU	2	0.999693409243789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN6909_c0_g1_2705_TPlot.pdf
TRINITY_DN6909_c0_g1:2706	si_a636	TRINITY_DN6909_c0_g1	2695	2715	2706	-26.30	-18.40	0.699619771863118	6	1-2,2715-2714;4-7,2712-2709;9-20,2707-2696	3-3,2713-2713[SIL];8-8,2708-2708[SIL];21-21,2695-2695[UP3]	.((((((((((((.((((.((&)).)))).)))))))))))).	AAUUACUCAAAAAUGUCGCCA&UGUCGAUUUUUUUGAGUAAUA	4	0.999775456279826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN6909_c0_g1_2706_TPlot.pdf
TRINITY_DN6909_c0_g1:2707	si_a635	TRINITY_DN6909_c0_g1	2696	2716	2707	-26.10	-19.10	0.731800766283525	5	1-3,2716-2714;5-8,2712-2709;10-21,2707-2696	4-4,2713-2713[SIL];9-9,2708-2708[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	AUUACUCAAAAAUGUCGCCAU&AUGUCGAUUUUUUUGAGUAAU	2	0.9495652935005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN6909_c0_g1_2707_TPlot.pdf
TRINITY_DN6909_c0_g1:2708	si_a634	TRINITY_DN6909_c0_g1	2697	2717	2708	-26.40	-17.90	0.678030303030303	6	2-4,2716-2714;6-9,2712-2709;11-21,2707-2697	1-1,2717-2717[UP5];5-5,2713-2713[SIL];10-10,2708-2708[SIL]	(((((((((((.((((.(((.&.))).)))).)))))))))))	UUACUCAAAAAUGUCGCCAUU&UAUGUCGAUUUUUUUGAGUAA	2	0.999902439946276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN6909_c0_g1_2708_TPlot.pdf
TRINITY_DN690_c0_g1:3661	si_s703	TRINITY_DN690_c0_g1	3650	3670	3661	-32.80	-21.98	0.670121951219512	3.5	1-12,3670-3659;16-21,3655-3650	13-15,3658-3656[SIL]	((((((...((((((((((((&))))))))))))...))))))	CCUUGUAUUCUAAUAAAUCGA&UCGAUUUAUUAGUGAACAGGG	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s703_TRINITY_DN690_c0_g1_3661_TPlot.pdf
TRINITY_DN6910_c0_g1:170	si_a478	TRINITY_DN6910_c0_g1	159	180	170	-21.30	-15.70	0.737089201877934	6	1-9,180-172;10-18,170-162	x-x,171-171[BULt];19-21,161-159[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AUUUUCUAUAUAUACAAUGAUU&AAUUAUUGU-UAUAUAGAAUAU	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN6910_c0_g1_170_TPlot.pdf
TRINITY_DN6910_c0_g1:172	si_a477	TRINITY_DN6910_c0_g1	160	181	172	-21.50	-16.80	0.781395348837209	5	1-10,181-172;11-19,170-162	x-x,171-171[BULt];20-21,161-160[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	UUUUCUAUAUAUACAAUGAUUA&UAAUUAUUGU-UAUAUAGAAUA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN6910_c0_g1_172_TPlot.pdf
TRINITY_DN6910_c0_g1:173	si_a476	TRINITY_DN6910_c0_g1	161	182	173	-22.90	-18.10	0.790393013100437	4.5	1-11,182-172;12-20,170-162	x-x,171-171[BULt];21-21,161-161[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	UUUCUAUAUAUACAAUGAUUAU&GUAAUUAUUGU-UAUAUAGAAU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN6910_c0_g1_173_TPlot.pdf
TRINITY_DN6910_c0_g1:175	si_a474	TRINITY_DN6910_c0_g1	163	184	175	-23.60	-17.10	0.724576271186441	6	3-13,182-172;14-21,170-163	1-2,184-183[UP5];x-x,171-171[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UCUAUAUAUACAAUGAUUAUUA&AUGUAAUUAUUGU-UAUAUAGA	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN6910_c0_g1_175_TPlot.pdf
TRINITY_DN6910_c0_g1:176	si_a473	TRINITY_DN6910_c0_g1	164	185	176	-23.00	-15.00	0.652173913043478	8	4-14,182-172;15-21,170-164	1-3,185-183[UP5];x-x,171-171[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	CUAUAUAUACAAUGAUUAUUAA&UAUGUAAUUAUUGU-UAUAUAG	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN6910_c0_g1_176_TPlot.pdf
TRINITY_DN6910_c4_g1:54	si_a478	TRINITY_DN6910_c4_g1	43	66	54	-21.30	-14.30	0.671361502347418	9	1-9,66-58;10-18,54-46	x-x,57-55[BULt];19-21,45-43[UP3]	...(((((((((...(((((((((&)))))))))---)))))))))...	AUUUUCUAUAUAUAUACAAUAAUU&AAUUAUUGU---UAUAUAGAAUAU	2	0.997190032184006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN6910_c4_g1_54_TPlot.pdf
TRINITY_DN6910_c4_g1:58	si_a477	TRINITY_DN6910_c4_g1	44	67	58	-21.50	-15.40	0.716279069767442	8	1-10,67-58;11-19,54-46	x-x,57-55[BULt];20-21,45-44[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UUUUCUAUAUAUAUACAAUAAUUA&UAAUUAUUGU---UAUAUAGAAUA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN6910_c4_g1_58_TPlot.pdf
TRINITY_DN6910_c4_g1:59	si_a476	TRINITY_DN6910_c4_g1	45	68	59	-22.90	-16.70	0.729257641921397	7.5	1-11,68-58;12-20,54-46	x-x,57-55[BULt];21-21,45-45[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	UUUCUAUAUAUAUACAAUAAUUAU&GUAAUUAUUGU---UAUAUAGAAU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN6910_c4_g1_59_TPlot.pdf
TRINITY_DN6910_c4_g1:60	si_a475	TRINITY_DN6910_c4_g1	46	69	60	-23.50	-16.60	0.706382978723404	8	2-12,68-58;13-21,54-46	1-1,69-69[UP5];x-x,57-55[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	UUCUAUAUAUAUACAAUAAUUAUU&UGUAAUUAUUGU---UAUAUAGAA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN6910_c4_g1_60_TPlot.pdf
TRINITY_DN6910_c4_g1:61	si_a451	TRINITY_DN6910_c4_g1	49	70	61	-23.60	-16.40	0.694915254237288	4	2-13,69-58;14-21,56-49	1-1,70-70[UP5];x-x,57-57[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	UAUAUAUAUACAAUAAUUAUUA&AGAUAAUUGUUGU-UAUAUAUA	0	0.0979282246228984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN6910_c4_g1_61_TPlot.pdf
TRINITY_DN6911_c0_g1:1057	si_s622	TRINITY_DN6911_c0_g1	1045	1067	1057	-34.20	-23.10	0.675438596491228	8	2-5,1066-1063;6-8,1061-1059;10-17,1057-1050;18-21,1048-1045	1-1,1067-1067[UP5];x-x,1062-1062[BULt];9-9,1058-1058[SIL];x-x,1049-1049[BULt]	((((.((((((((.(((.((((.&.))))-))).))))))))-))))	CUACGGAGGAGGUGGCUCUGGAG&AUCCA-AGCGAUCUUUUC-GUAG	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN6911_c0_g1_1057_TPlot.pdf
TRINITY_DN6911_c0_g1:1059	si_s806	TRINITY_DN6911_c0_g1	1048	1072	1059	-28.60	-21.00	0.734265734265734	14.5	2-8,1071-1065;9-20,1060-1049	1-1,1072-1072[UP5];x-x,1064-1061[BULt];21-21,1048-1048[UP3]	.((((((((((((....(((((((.&.)))))))----)))))))))))).	CGGAGGAGGUGGCUCUGGAGGAUAC&UUAUCUUC----GUUACCUUUUCUU	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6911_c0_g1_1059_TPlot.pdf
TRINITY_DN6911_c0_g1:106	si_s6	TRINITY_DN6911_c0_g1	95	114	106	-21.70	-15.30	0.705069124423963	7.5	1-8,114-107;10-18,106-98	9-9,x-x[BULq];19-21,97-95[UP3]	...(((((((((-((((((((&)))))))).)))))))))...	AAAAGUGAUAAU-AGUGAUGU&AUAUUACUUAUUAUUACUAUA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN6911_c0_g1_106_TPlot.pdf
TRINITY_DN6911_c0_g1:1060	si_s805	TRINITY_DN6911_c0_g1	1049	1073	1060	-28.60	-21.00	0.734265734265734	15.5	3-9,1071-1065;10-21,1060-1049	1-2,1073-1072[UP5];x-x,1064-1061[BULt]	((((((((((((....(((((((..&..)))))))----))))))))))))	GGAGGAGGUGGCUCUGGAGGAUACG&UUUAUCUUC----GUUACCUUUUCU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6911_c0_g1_1060_TPlot.pdf
TRINITY_DN6911_c0_g1:1065	si_s804	TRINITY_DN6911_c0_g1	1050	1074	1065	-27.90	-19.80	0.709677419354839	16.5	4-10,1071-1065;11-21,1060-1050	1-3,1074-1072[UP5];x-x,1064-1061[BULt]	(((((((((((....(((((((...&...)))))))----)))))))))))	GAGGAGGUGGCUCUGGAGGAUACGG&UUUUAUCUUC----GUUACCUUUUC	3	0.999746396662177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6911_c0_g1_1065_TPlot.pdf
TRINITY_DN6911_c0_g1:108	si_s3	TRINITY_DN6911_c0_g1	98	117	108	-21.20	-16.70	0.787735849056604	6.5	2-11,116-107;13-21,106-98	1-1,117-117[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	AGUGAUAAU-AGUGAUGUAGU&UUUAUAUUACUUAUUAUUACU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN6911_c0_g1_108_TPlot.pdf
TRINITY_DN6911_c0_g1:1241	si_a752	TRINITY_DN6911_c0_g1	1229	1252	1241	-34.80	-23.20	0.666666666666667	9.5	1-5,1252-1248;6-8,1245-1243;10-15,1241-1236;16-21,1234-1229	x-x,1247-1246[BULt];9-9,1242-1242[SIL];x-x,1235-1235[BULt]	((((((.((((((.(((..(((((&)))))--))).))))))-))))))	GAGGCCACGGAGGUGGUGGUCAUG&CAUGA--ACCUCCUUUG-GGUUUU	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN6911_c0_g1_1241_TPlot.pdf
TRINITY_DN6911_c0_g1:1242	si_a751	TRINITY_DN6911_c0_g1	1230	1253	1242	-37.20	-25.00	0.672043010752688	9	1-6,1253-1248;7-9,1245-1243;11-16,1241-1236;17-21,1234-1230	x-x,1247-1246[BULt];10-10,1242-1242[SIL];x-x,1235-1235[BULt]	(((((.((((((.(((..((((((&))))))--))).))))))-)))))	AGGCCACGGAGGUGGUGGUCAUGG&CCAUGA--ACCUCCUUUG-GGUUU	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN6911_c0_g1_1242_TPlot.pdf
TRINITY_DN6911_c0_g1:1438	si_a21	TRINITY_DN6911_c0_g1	1427	1448	1438	-24.30	-16.10	0.662551440329218	11	1-2,1448-1447;3-4,1445-1444;6-19,1442-1429	x-x,1446-1446[BULt];5-5,1443-1443[SIL];20-21,1428-1427[UP3]	..((((((((((((((.((.((&))-)).))))))))))))))..	AAGGAACUGGAAGUGGUUAUGG&CC-UAUUUAUUUUUAGUUCUAA	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN6911_c0_g1_1438_TPlot.pdf
TRINITY_DN6911_c0_g1:1440	si_a19	TRINITY_DN6911_c0_g1	1429	1453	1440	-27.00	-18.76	0.694814814814815	17.5	2-5,1452-1449;8-21,1442-1429	1-1,1453-1453[UP5];6-7,1448-1443[AILt]	((((((((((((((......((((.&.))))----..))))))))))))))	GGAACUGGAAGUGGUUAUGGAGGCG&AGCCU----AUUUAUUUUUAGUUCU	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN6911_c0_g1_1440_TPlot.pdf
TRINITY_DN6911_c0_g1:1441	si_a18	TRINITY_DN6911_c0_g1	1430	1454	1441	-26.30	-17.66	0.67148288973384	19	3-6,1452-1449;9-21,1442-1430	1-2,1454-1453[UP5];7-8,1448-1443[AILt]	(((((((((((((......((((..&..))))----..)))))))))))))	GAACUGGAAGUGGUUAUGGAGGCGG&AAGCCU----AUUUAUUUUUAGUUC	3	0.999951779956384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN6911_c0_g1_1441_TPlot.pdf
TRINITY_DN6911_c0_g1:1444	si_a231	TRINITY_DN6911_c0_g1	1433	1453	1444	-26.90	-17.90	0.66542750929368	8	2-14,1452-1440;16-18,1438-1436;20-20,1434-1434	1-1,1453-1453[UP5];15-15,1439-1439[SIL];19-19,1435-1435[SIL];21-21,1433-1433[UP3]	.(.(((.(((((((((((((.&.))))))))))))).))).).	CUGGAAGUGGUUAUGGAGGCG&UGUUUCUAUAAUCAAUUCGAU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN6911_c0_g1_1444_TPlot.pdf
TRINITY_DN6911_c0_g1:1445	si_a230	TRINITY_DN6911_c0_g1	1434	1454	1445	-26.90	-17.80	0.661710037174721	8.5	3-15,1452-1440;17-19,1438-1436;21-21,1434-1434	1-2,1454-1453[UP5];16-16,1439-1439[SIL];20-20,1435-1435[SIL]	(.(((.(((((((((((((..&..))))))))))))).))).)	UGGAAGUGGUUAUGGAGGCGG&AUGUUUCUAUAAUCAAUUCGA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN6911_c0_g1_1445_TPlot.pdf
TRINITY_DN6911_c0_g1:1536	si_a788	TRINITY_DN6911_c0_g1	1525	1546	1536	-24.80	-18.20	0.733870967741935	10	1-8,1546-1539;9-19,1537-1527	x-x,1538-1538[BULt];20-21,1526-1525[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	CAGGGAGGUGGAAUAGGUGGAG&UUCUAUUU-UUCUAUUUUCCAA	3	0.999474394788521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN6911_c0_g1_1536_TPlot.pdf
TRINITY_DN6911_c0_g1:1537	si_a787	TRINITY_DN6911_c0_g1	1526	1547	1537	-26.30	-20.90	0.79467680608365	9	1-9,1547-1539;10-20,1537-1527	x-x,1538-1538[BULt];21-21,1526-1526[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AGGGAGGUGGAAUAGGUGGAGG&CUUCUAUUU-UUCUAUUUUCCA	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN6911_c0_g1_1537_TPlot.pdf
TRINITY_DN6911_c0_g1:1593	si_a785	TRINITY_DN6911_c0_g1	1582	1606	1593	-25.90	-18.26	0.705019305019305	17	1-9,1606-1598;12-21,1591-1582	10-11,1597-1592[AILt]	((((((((((......(((((((((&)))))))))----..))))))))))	GGAGGUGGAGCAGGAUAUGGAGGAG&CUCUUCUAU----UUUUCUAUUUUC	3	0.999999995372182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6911_c0_g1_1593_TPlot.pdf
TRINITY_DN6911_c0_g1:1598	si_a784	TRINITY_DN6911_c0_g1	1583	1607	1598	-24.70	-16.16	0.654251012145749	17.5	2-10,1606-1598;13-21,1591-1583	1-1,1607-1607[UP5];11-12,1597-1592[AILt]	(((((((((......(((((((((.&.)))))))))----..)))))))))	GAGGUGGAGCAGGAUAUGGAGGAGG&ACUCUUCUAU----UUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6911_c0_g1_1598_TPlot.pdf
TRINITY_DN6911_c0_g1:1727	si_s71	TRINITY_DN6911_c0_g1	1713	1736	1727	-25.70	-17.32	0.673929961089494	15	1-12,1736-1725;15-21,1719-1713	13-14,1724-1720[AILt]	(((((((.....((((((((((((&))))))))))))---..)))))))	AGGAGGGUACUCAGGAGGUGGAGG&CUUCUAUUUUUU---UUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6911_c0_g1_1727_TPlot.pdf
TRINITY_DN6911_c0_g1:1737	si_a777	TRINITY_DN6911_c0_g1	1726	1745	1737	-27.00	-18.10	0.67037037037037	9.5	1-5,1745-1741;8-21,1739-1726	6-7,1740-1740[AILq]	((((((((((((((.-(((((&)))))..))))))))))))))	GGAGGUGGAGGAGUC-GGUCA&UGAUUCAACUCUUCUAUUUUU	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN6911_c0_g1_1737_TPlot.pdf
TRINITY_DN6911_c0_g1:1738	si_a776	TRINITY_DN6911_c0_g1	1727	1746	1738	-27.10	-18.70	0.690036900369004	8.5	1-6,1746-1741;9-21,1739-1727	7-8,1740-1740[AILq]	(((((((((((((.-((((((&))))))..)))))))))))))	GAGGUGGAGGAGUC-GGUCAA&UUGAUUCAACUCUUCUAUUUU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN6911_c0_g1_1738_TPlot.pdf
TRINITY_DN6911_c0_g1:1753	si_a327	TRINITY_DN6911_c0_g1	1741	1762	1753	-28.40	-21.00	0.73943661971831	10	2-12,1761-1751;13-18,1749-1744;20-21,1742-1741	1-1,1762-1762[UP5];x-x,1750-1750[BULt];19-19,1743-1743[SIL]	((.((((((.(((((((((((.&.)))))))))))-)))))).))	GGUCAAGGAGGUGGAGGAGUCG&UGAUUUUUUUAU-UCCUUGUCC	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN6911_c0_g1_1753_TPlot.pdf
TRINITY_DN6911_c0_g1:1756	si_a324	TRINITY_DN6911_c0_g1	1744	1769	1756	-27.50	-19.50	0.709090909090909	14	1-7,1769-1763;8-15,1758-1751;16-21,1749-1744	x-x,1762-1759[BULt];x-x,1750-1750[BULt]	((((((.((((((((....(((((((&)))))))----))))))))-))))))	CAAGGAGGUGGAGGAGUCGGUCAUGG&CCAUGAU----UUUUUUAU-UCCUUG	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN6911_c0_g1_1756_TPlot.pdf
TRINITY_DN6911_c0_g1:1757	si_a323	TRINITY_DN6911_c0_g1	1745	1770	1757	-26.80	-18.60	0.694029850746269	13.5	1-8,1770-1763;9-16,1758-1751;17-21,1749-1745	x-x,1762-1759[BULt];x-x,1750-1750[BULt]	(((((.((((((((....((((((((&))))))))----))))))))-)))))	AAGGAGGUGGAGGAGUCGGUCAUGGA&UCCAUGAU----UUUUUUAU-UCCUU	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN6911_c0_g1_1757_TPlot.pdf
TRINITY_DN6911_c0_g1:1758	si_a322	TRINITY_DN6911_c0_g1	1746	1771	1758	-27.00	-17.80	0.659259259259259	14.5	2-9,1770-1763;10-17,1758-1751;18-21,1749-1746	1-1,1771-1771[UP5];x-x,1762-1759[BULt];x-x,1750-1750[BULt]	((((.((((((((....((((((((.&.))))))))----))))))))-))))	AGGAGGUGGAGGAGUCGGUCAUGGAG&AUCCAUGAU----UUUUUUAU-UCCU	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN6911_c0_g1_1758_TPlot.pdf
TRINITY_DN6911_c0_g1:1955	si_a785	TRINITY_DN6911_c0_g1	1940	1964	1955	-25.90	-17.90	0.691119691119691	10.5	1-10,1964-1955;11-13,1951-1949;14-21,1947-1940	x-x,1954-1952[BULt];x-x,1948-1948[BULt]	((((((((.(((...((((((((((&))))))))))---)))-))))))))	GGAGGUAGUAAAAGCAAUGGAGGAG&CUCUUCUAUU---UUU-CUAUUUUC	3	0.999999999981206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6911_c0_g1_1955_TPlot.pdf
TRINITY_DN6911_c0_g1:2007	si_s73	TRINITY_DN6911_c0_g1	1997	2017	2007	-24.00	-16.30	0.679166666666667	7.5	1-7,2017-2011;8-15,2009-2002;17-21,2001-1997	x-x,2010-2010[BULt];16-16,x-x[BULq]	(((((-((((((((.(((((((&)))))))-)))))))).)))))	GGAGG-AGGAAAAGUAAGUGGA&UCUAUUU-UUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6911_c0_g1_2007_TPlot.pdf
TRINITY_DN6911_c0_g1:2008	si_s72	TRINITY_DN6911_c0_g1	1998	2018	2008	-24.10	-16.40	0.680497925311203	7.5	1-8,2018-2011;9-16,2009-2002;18-21,2001-1998	x-x,2010-2010[BULt];17-17,x-x[BULq]	((((-((((((((.((((((((&))))))))-)))))))).))))	GAGG-AGGAAAAGUAAGUGGAG&UUCUAUUU-UUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6911_c0_g1_2008_TPlot.pdf
TRINITY_DN6911_c0_g1:2009	si_s71	TRINITY_DN6911_c0_g1	1997	2019	2009	-25.70	-17.80	0.692607003891051	8.5	1-9,2019-2011;10-19,2009-2000;20-21,1998-1997	x-x,2010-2010[BULt];x-x,1999-1999[BULt]	((.((((((((((.(((((((((&)))))))))-))))))))))-))	GGAGGAGGAAAAGUAAGUGGAGG&CUUCUAUUU-UUUUUCUUUC-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6911_c0_g1_2009_TPlot.pdf
TRINITY_DN6911_c0_g1:2011	si_s70	TRINITY_DN6911_c0_g1	1999	2020	2011	-25.80	-17.80	0.689922480620155	9	2-10,2019-2011;11-20,2009-2000	1-1,2020-2020[UP5];x-x,2010-2010[BULt];21-21,1999-1999[UP3]	.((((((((((.(((((((((.&.)))))))))-)))))))))).	AGGAGGAAAAGUAAGUGGAGGC&ACUUCUAUUU-UUUUUCUUUCC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6911_c0_g1_2011_TPlot.pdf
TRINITY_DN6911_c0_g1:2012	si_s69	TRINITY_DN6911_c0_g1	2000	2021	2012	-23.40	-17.80	0.760683760683761	10	3-11,2019-2011;12-21,2009-2000	1-2,2021-2020[UP5];x-x,2010-2010[BULt]	((((((((((.(((((((((..&..)))))))))-))))))))))	GGAGGAAAAGUAAGUGGAGGCG&AACUUCUAUUU-UUUUUCUUUC	3	0.999997908301714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6911_c0_g1_2012_TPlot.pdf
TRINITY_DN6911_c0_g1:2013	si_s68	TRINITY_DN6911_c0_g1	2001	2022	2013	-23.10	-15.80	0.683982683982684	10.5	1-1,2022-2022;4-12,2019-2011;13-21,2009-2001	2-3,2021-2020[SIL];x-x,2010-2010[BULt]	(((((((((.(((((((((..(&)..)))))))))-)))))))))	GAGGAAAAGUAAGUGGAGGCGG&CAACUUCUAUUU-UUUUUCUUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6911_c0_g1_2013_TPlot.pdf
TRINITY_DN6911_c0_g1:2084	si_s73	TRINITY_DN6911_c0_g1	2073	2093	2084	-24.00	-17.60	0.733333333333333	7	1-12,2093-2082;14-21,2080-2073	13-13,2081-2081[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	GGAGGAGGAAAAGGAAGUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999989761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6911_c0_g1_2084_TPlot.pdf
TRINITY_DN6911_c0_g1:2085	si_s72	TRINITY_DN6911_c0_g1	2074	2094	2085	-24.10	-17.70	0.734439834024896	7	1-13,2094-2082;15-21,2080-2074	14-14,2081-2081[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAGGAGGAAAAGGAAGUGGAG&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999972391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN6911_c0_g1_2085_TPlot.pdf
TRINITY_DN6911_c0_g1:2086	si_s71	TRINITY_DN6911_c0_g1	2075	2095	2086	-25.70	-19.80	0.770428015564202	7	1-14,2095-2082;16-21,2080-2075	15-15,2081-2081[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	AGGAGGAAAAGGAAGUGGAGG&CUUCUAUUUUUUUUCUUUCCU	3	0.999683141958202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6911_c0_g1_2086_TPlot.pdf
TRINITY_DN6911_c0_g1:2087	si_s70	TRINITY_DN6911_c0_g1	2076	2096	2087	-25.80	-18.70	0.724806201550388	8	2-15,2095-2082;17-21,2080-2076	1-1,2096-2096[UP5];16-16,2081-2081[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	GGAGGAAAAGGAAGUGGAGGG&ACUUCUAUUUUUUUUCUUUCC	3	0.99999950308576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN6911_c0_g1_2087_TPlot.pdf
TRINITY_DN6911_c0_g1:2088	si_s69	TRINITY_DN6911_c0_g1	2076	2097	2088	-23.40	-18.30	0.782051282051282	10	3-12,2095-2086;13-21,2084-2076	1-2,2097-2096[UP5];x-x,2085-2085[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	GGAGGAAAAGGAAGUGGAGGGG&AACUUCUAUUUU-UUUUCUUUC	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN6911_c0_g1_2088_TPlot.pdf
TRINITY_DN6911_c0_g1:2089	si_s68	TRINITY_DN6911_c0_g1	2077	2098	2089	-23.10	-16.70	0.722943722943723	9.5	1-1,2098-2098;4-13,2095-2086;14-21,2084-2077	2-3,2097-2096[SIL];x-x,2085-2085[BULt]	((((((((.((((((((((..(&)..))))))))))-))))))))	GAGGAAAAGGAAGUGGAGGGGG&CAACUUCUAUUUU-UUUUCUUU	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN6911_c0_g1_2089_TPlot.pdf
TRINITY_DN6911_c0_g1:2090	si_s67	TRINITY_DN6911_c0_g1	2078	2099	2090	-25.60	-17.20	0.671875	9.5	1-2,2099-2098;5-14,2095-2086;15-21,2084-2078	3-4,2097-2096[SIL];x-x,2085-2085[BULt]	(((((((.((((((((((..((&))..))))))))))-)))))))	AGGAAAAGGAAGUGGAGGGGGU&GCAACUUCUAUUUU-UUUUCUU	3	0.99999999996183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6911_c0_g1_2090_TPlot.pdf
TRINITY_DN6911_c0_g1:2093	si_s64	TRINITY_DN6911_c0_g1	2082	2102	2093	-24.10	-16.10	0.66804979253112	11.5	3-5,2100-2098;8-21,2095-2082	1-2,2102-2101[UP5];6-7,2097-2096[SIL]	((((((((((((((..(((..&..)))..))))))))))))))	AAAGGAAGUGGAGGGGGUUCA&UUAGCAACUUCUAUUUUUUUU	3	0.999999999646151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN6911_c0_g1_2093_TPlot.pdf
TRINITY_DN6911_c0_g1:2111	si_s802	TRINITY_DN6911_c0_g1	2100	2120	2111	-26.40	-18.10	0.685606060606061	10	3-14,2118-2107;16-19,2105-2102	1-2,2120-2119[UP5];15-15,2106-2106[SIL];20-21,2101-2100[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UCAGGUUACGGAGGUGGAACU&UAUUUUAUCUUCGUUACCUUU	3	0.999999415726997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN6911_c0_g1_2111_TPlot.pdf
TRINITY_DN6911_c0_g1:2179	si_a26	TRINITY_DN6911_c0_g1	2168	2188	2179	-28.00	-19.00	0.678571428571429	9	1-4,2188-2185;6-9,2183-2180;11-20,2178-2169	5-5,2184-2184[SIL];10-10,2179-2179[SIL];21-21,2168-2168[UP3]	.((((((((((.((((.((((&)))).)))).)))))))))).	AGGUCUUGGAGGUGGACAUAG&UUAUUUUUAGUUCUAAGACCG	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN6911_c0_g1_2179_TPlot.pdf
TRINITY_DN6911_c0_g1:2180	si_a25	TRINITY_DN6911_c0_g1	2169	2189	2180	-26.50	-18.60	0.70188679245283	9.5	2-5,2188-2185;7-10,2183-2180;12-21,2178-2169	1-1,2189-2189[UP5];6-6,2184-2184[SIL];11-11,2179-2179[SIL]	((((((((((.((((.((((.&.)))).)))).))))))))))	GGUCUUGGAGGUGGACAUAGU&UUUAUUUUUAGUUCUAAGACC	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN6911_c0_g1_2180_TPlot.pdf
TRINITY_DN6911_c0_g1:2187	si_a785	TRINITY_DN6911_c0_g1	2175	2196	2187	-25.90	-16.90	0.652509652509653	12	2-10,2195-2187;13-21,2183-2175	1-1,2196-2196[UP5];11-12,2186-2184[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	GGAGGUGGACAUAGUGGAGGAA&CUCUUCUAUU-UUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6911_c0_g1_2187_TPlot.pdf
TRINITY_DN6911_c0_g1:2292	si_a69	TRINITY_DN6911_c0_g1	2281	2301	2292	-24.00	-16.20	0.675	10.5	3-12,2299-2290;14-20,2288-2282	1-2,2301-2300[UP5];13-13,2289-2289[SIL];21-21,2281-2281[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	UUGGAGGAGGGUUUGGAGGUG&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999352834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN6911_c0_g1_2292_TPlot.pdf
TRINITY_DN6911_c0_g1:2340	si_s811	TRINITY_DN6911_c0_g1	2329	2349	2340	-26.40	-17.30	0.65530303030303	8.5	1-12,2349-2338;14-15,2336-2335;17-19,2333-2331	13-13,2337-2337[SIL];16-16,2334-2334[SIL];20-21,2330-2329[UP3]	..(((.((.((((((((((((&)))))))))))).)).)))..	GGAUUUGGUGGAGGUAGCGGA&UUCGUUACCUUUUCUUAAUAA	2	0.999980654327022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN6911_c0_g1_2340_TPlot.pdf
TRINITY_DN6911_c0_g1:2341	si_s810	TRINITY_DN6911_c0_g1	2330	2350	2341	-27.90	-20.50	0.734767025089606	7	1-13,2350-2338;15-16,2336-2335;18-20,2333-2331	14-14,2337-2337[SIL];17-17,2334-2334[SIL];21-21,2330-2330[UP3]	.(((.((.(((((((((((((&))))))))))))).)).))).	GAUUUGGUGGAGGUAGCGGAG&CUUCGUUACCUUUUCUUAAUA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN6911_c0_g1_2341_TPlot.pdf
TRINITY_DN6911_c0_g1:2342	si_s809	TRINITY_DN6911_c0_g1	2331	2351	2342	-28.50	-20.30	0.712280701754386	6	1-14,2351-2338;16-17,2336-2335;19-21,2333-2331	15-15,2337-2337[SIL];18-18,2334-2334[SIL]	(((.((.((((((((((((((&)))))))))))))).)).)))	AUUUGGUGGAGGUAGCGGAGG&UCUUCGUUACCUUUUCUUAAU	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6911_c0_g1_2342_TPlot.pdf
TRINITY_DN6911_c0_g1:2343	si_s808	TRINITY_DN6911_c0_g1	2332	2352	2343	-28.60	-21.60	0.755244755244755	8.5	1-15,2352-2338;17-18,2336-2335	16-16,2337-2337[SIL];19-21,2334-2332[UP3]	...((.(((((((((((((((&))))))))))))))).))...	UUUGGUGGAGGUAGCGGAGGU&AUCUUCGUUACCUUUUCUUAA	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6911_c0_g1_2343_TPlot.pdf
TRINITY_DN6911_c0_g1:2344	si_s807	TRINITY_DN6911_c0_g1	2333	2353	2344	-28.90	-22.40	0.775086505190311	8	1-16,2353-2338;18-19,2336-2335	17-17,2337-2337[SIL];20-21,2334-2333[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	UUGGUGGAGGUAGCGGAGGUG&UAUCUUCGUUACCUUUUCUUA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6911_c0_g1_2344_TPlot.pdf
TRINITY_DN6911_c0_g1:2345	si_s806	TRINITY_DN6911_c0_g1	2334	2354	2345	-28.60	-22.90	0.800699300699301	8	1-17,2354-2338;19-20,2336-2335	18-18,2337-2337[SIL];21-21,2334-2334[UP3]	.((.(((((((((((((((((&))))))))))))))))).)).	UGGUGGAGGUAGCGGAGGUGG&UUAUCUUCGUUACCUUUUCUU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6911_c0_g1_2345_TPlot.pdf
TRINITY_DN6911_c0_g1:2346	si_s805	TRINITY_DN6911_c0_g1	2335	2355	2346	-28.60	-22.90	0.800699300699301	8.5	2-18,2354-2338;20-21,2336-2335	1-1,2355-2355[UP5];19-19,2337-2337[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GGUGGAGGUAGCGGAGGUGGU&UUUAUCUUCGUUACCUUUUCU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6911_c0_g1_2346_TPlot.pdf
TRINITY_DN6911_c0_g1:2347	si_s804	TRINITY_DN6911_c0_g1	2336	2356	2347	-27.90	-21.80	0.781362007168459	10	3-19,2354-2338;21-21,2336-2336	1-2,2356-2355[UP5];20-20,2337-2337[SIL]	(.(((((((((((((((((..&..))))))))))))))))).)	GUGGAGGUAGCGGAGGUGGUA&UUUUAUCUUCGUUACCUUUUC	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6911_c0_g1_2347_TPlot.pdf
TRINITY_DN6911_c0_g1:2348	si_s803	TRINITY_DN6911_c0_g1	2337	2357	2348	-26.00	-21.50	0.826923076923077	11.5	4-20,2354-2338	1-3,2357-2355[UP5];21-21,2337-2337[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGGAGGUAGCGGAGGUGGUAA&AUUUUAUCUUCGUUACCUUUU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6911_c0_g1_2348_TPlot.pdf
TRINITY_DN6911_c0_g1:2349	si_s802	TRINITY_DN6911_c0_g1	2338	2358	2349	-26.40	-21.50	0.814393939393939	12.5	5-21,2354-2338	1-4,2358-2355[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGGUAGCGGAGGUGGUAAA&UAUUUUAUCUUCGUUACCUUU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN6911_c0_g1_2349_TPlot.pdf
TRINITY_DN6911_c0_g1:2350	si_s801	TRINITY_DN6911_c0_g1	2339	2359	2350	-28.20	-21.20	0.75177304964539	14	6-21,2354-2339	1-5,2359-2355[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGGUAGCGGAGGUGGUAAAA&GUAUUUUAUCUUCGUUACCUU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN6911_c0_g1_2350_TPlot.pdf
TRINITY_DN6911_c0_g1:2351	si_s800	TRINITY_DN6911_c0_g1	2340	2360	2351	-29.70	-19.90	0.67003367003367	15	7-21,2354-2340	1-6,2360-2355[UP5]	(((((((((((((((......&......)))))))))))))))	AGGUAGCGGAGGUGGUAAAAG&CGUAUUUUAUCUUCGUUACCU	2	0.988242631555895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6911_c0_g1_2351_TPlot.pdf
TRINITY_DN6911_c0_g1:2388	si_a68	TRINITY_DN6911_c0_g1	2377	2396	2388	-25.40	-17.10	0.673228346456693	10	1-8,2396-2389;12-20,2386-2378	9-11,2388-2387[AILq];21-21,2377-2377[UP3]	.(((((((((..-((((((((&))))))))...))))))))).	GGAGGAACAAAC-GAAGGAGG&CUUCUUUCAAAUUGUUUUUCA	2	0.999999456418668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN6911_c0_g1_2388_TPlot.pdf
TRINITY_DN6911_c0_g1:2412	si_s811	TRINITY_DN6911_c0_g1	2400	2421	2412	-26.40	-17.30	0.65530303030303	9	1-5,2421-2417;7-16,2415-2406;17-19,2404-2402	6-6,2416-2416[SIL];x-x,2405-2405[BULt];20-21,2401-2400[UP3]	..(((.((((((((((.(((((&))))).))))))))))-)))..	AAGUUCAGGAGGAGGUUACGGA&UUCGUUACCUUUUCUU-AAUAA	2	0.999982487768404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN6911_c0_g1_2412_TPlot.pdf
TRINITY_DN6911_c0_g1:2413	si_s810	TRINITY_DN6911_c0_g1	2401	2422	2413	-27.90	-20.50	0.734767025089606	7.5	1-6,2422-2417;8-17,2415-2406;18-20,2404-2402	7-7,2416-2416[SIL];x-x,2405-2405[BULt];21-21,2401-2401[UP3]	.(((.((((((((((.((((((&)))))).))))))))))-))).	AGUUCAGGAGGAGGUUACGGAG&CUUCGUUACCUUUUCUU-AAUA	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN6911_c0_g1_2413_TPlot.pdf
TRINITY_DN6911_c0_g1:2414	si_s809	TRINITY_DN6911_c0_g1	2403	2423	2414	-28.50	-20.60	0.72280701754386	8.5	2-7,2422-2417;9-18,2415-2406	1-1,2423-2423[UP5];8-8,2416-2416[SIL];19-21,2405-2403[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UUCAGGAGGAGGUUACGGAGG&UCUUCGUUACCUUUUCUUAAU	2	0.960186632159547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6911_c0_g1_2414_TPlot.pdf
TRINITY_DN6911_c0_g1:2415	si_s808	TRINITY_DN6911_c0_g1	2404	2424	2415	-28.60	-20.60	0.72027972027972	9.5	3-8,2422-2417;10-19,2415-2406	1-2,2424-2423[UP5];9-9,2416-2416[SIL];20-21,2405-2404[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UCAGGAGGAGGUUACGGAGGA&AUCUUCGUUACCUUUUCUUAA	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6911_c0_g1_2415_TPlot.pdf
TRINITY_DN6911_c0_g1:2416	si_s807	TRINITY_DN6911_c0_g1	2405	2425	2416	-28.90	-20.60	0.71280276816609	10.5	4-9,2422-2417;11-20,2415-2406	1-3,2425-2423[UP5];10-10,2416-2416[SIL];21-21,2405-2405[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	CAGGAGGAGGUUACGGAGGAG&UAUCUUCGUUACCUUUUCUUA	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6911_c0_g1_2416_TPlot.pdf
TRINITY_DN6911_c0_g1:2418	si_s805	TRINITY_DN6911_c0_g1	2407	2427	2418	-28.60	-19.70	0.688811188811189	13.5	6-11,2422-2417;13-21,2415-2407	1-5,2427-2423[UP5];12-12,2416-2416[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GGAGGAGGUUACGGAGGAGAU&UUUAUCUUCGUUACCUUUUCU	3	0.999998221046225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6911_c0_g1_2418_TPlot.pdf
TRINITY_DN6911_c0_g1:2419	si_s804	TRINITY_DN6911_c0_g1	2408	2428	2419	-27.90	-18.60	0.666666666666667	14	7-12,2422-2417;14-21,2415-2408	1-6,2428-2423[UP5];13-13,2416-2416[SIL]	((((((((.((((((......&......)))))).))))))))	GAGGAGGUUACGGAGGAGAUC&UUUUAUCUUCGUUACCUUUUC	3	0.999999999667001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6911_c0_g1_2419_TPlot.pdf
TRINITY_DN6911_c0_g1:2420	si_a327	TRINITY_DN6911_c0_g1	2407	2429	2420	-28.40	-18.96	0.667605633802817	14.5	1-10,2429-2420;14-17,2414-2411;19-21,2409-2407	11-13,2419-2415[AILt];18-18,2410-2410[SIL]	(((.((((.....((((((((((&))))))))))--...)))).)))	GGAGGAGGUUACGGAGGAGAUCA&UGAUUUUUUU--AUUCCUUGUCC	2	0.999958666064121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN6911_c0_g1_2420_TPlot.pdf
TRINITY_DN6911_c0_g1:2552	si_a785	TRINITY_DN6911_c0_g1	2542	2560	2552	-25.90	-17.18	0.663320463320463	12.5	1-9,2560-2552;14-21,2549-2542	10-13,2551-2550[AILq]	((((((((..--(((((((((&)))))))))....))))))))	GGGGGUGGUU--GUGGAGGAG&CUCUUCUAUUUUUCUAUUUUC	2	0.999999999989484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6911_c0_g1_2552_TPlot.pdf
TRINITY_DN6911_c0_g1:2558	si_s812	TRINITY_DN6911_c0_g1	2549	2567	2558	-26.40	-17.20	0.651515151515151	8.5	1-4,2567-2564;6-14,2562-2554;17-21,2553-2549	5-5,2563-2563[SIL];15-16,x-x[BULq]	(((((--(((((((((.((((&)))).)))))))))..)))))	GUUGU--GGAGGAGGUUGCGA&UCGUUACCUUUUCUUAAUAAU	2	0.999849180564006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN6911_c0_g1_2558_TPlot.pdf
TRINITY_DN6911_c0_g1:2559	si_s811	TRINITY_DN6911_c0_g1	2547	2568	2559	-26.40	-17.60	0.666666666666667	9.5	1-5,2568-2564;7-15,2562-2554;16-19,2552-2549	6-6,2563-2563[SIL];x-x,2553-2553[BULt];20-21,2548-2547[UP3]	..((((.(((((((((.(((((&))))).)))))))))-))))..	UGGUUGUGGAGGAGGUUGCGAA&UUCGUUACCUUUUCU-UAAUAA	2	0.999831303933513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN6911_c0_g1_2559_TPlot.pdf
TRINITY_DN6911_c0_g1:2560	si_s810	TRINITY_DN6911_c0_g1	2548	2569	2560	-27.90	-20.80	0.745519713261649	8	1-6,2569-2564;8-16,2562-2554;17-20,2552-2549	7-7,2563-2563[SIL];x-x,2553-2553[BULt];21-21,2548-2548[UP3]	.((((.(((((((((.((((((&)))))).)))))))))-)))).	GGUUGUGGAGGAGGUUGCGAAG&CUUCGUUACCUUUUCU-UAAUA	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN6911_c0_g1_2560_TPlot.pdf
TRINITY_DN6911_c0_g1:2561	si_s809	TRINITY_DN6911_c0_g1	2549	2570	2561	-28.50	-20.50	0.719298245614035	7.5	2-7,2569-2564;9-17,2562-2554;18-21,2552-2549	1-1,2570-2570[UP5];8-8,2563-2563[SIL];x-x,2553-2553[BULt]	((((.(((((((((.((((((.&.)))))).)))))))))-))))	GUUGUGGAGGAGGUUGCGAAGG&UCUUCGUUACCUUUUCU-UAAU	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6911_c0_g1_2561_TPlot.pdf
TRINITY_DN6911_c0_g1:2562	si_s808	TRINITY_DN6911_c0_g1	2551	2571	2562	-28.60	-20.30	0.70979020979021	10.5	3-8,2569-2564;10-18,2562-2554	1-2,2571-2570[UP5];9-9,2563-2563[SIL];19-21,2553-2551[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	UGUGGAGGAGGUUGCGAAGGA&AUCUUCGUUACCUUUUCUUAA	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6911_c0_g1_2562_TPlot.pdf
TRINITY_DN6911_c0_g1:2563	si_s807	TRINITY_DN6911_c0_g1	2552	2572	2563	-28.90	-20.30	0.70242214532872	11.5	4-9,2569-2564;11-19,2562-2554	1-3,2572-2570[UP5];10-10,2563-2563[SIL];20-21,2553-2552[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	GUGGAGGAGGUUGCGAAGGAG&UAUCUUCGUUACCUUUUCUUA	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6911_c0_g1_2563_TPlot.pdf
TRINITY_DN6911_c0_g1:2564	si_s806	TRINITY_DN6911_c0_g1	2553	2573	2564	-28.60	-20.30	0.70979020979021	12.5	5-10,2569-2564;12-20,2562-2554	1-4,2573-2570[UP5];11-11,2563-2563[SIL];21-21,2553-2553[UP3]	.(((((((((.((((((....&....)))))).))))))))).	UGGAGGAGGUUGCGAAGGAGG&UUAUCUUCGUUACCUUUUCUU	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6911_c0_g1_2564_TPlot.pdf
TRINITY_DN6911_c0_g1:2565	si_s805	TRINITY_DN6911_c0_g1	2554	2574	2565	-28.60	-20.50	0.716783216783217	9.5	1-3,2574-2572;5-11,2570-2564;13-21,2562-2554	4-4,2571-2571[SIL];12-12,2563-2563[SIL]	(((((((((.(((((((.(((&))).))))))).)))))))))	GGAGGAGGUUGCGAAGGAGGA&UUUAUCUUCGUUACCUUUUCU	2	0.983340638461441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6911_c0_g1_2565_TPlot.pdf
TRINITY_DN6911_c0_g1:2566	si_s804	TRINITY_DN6911_c0_g1	2555	2575	2566	-27.90	-20.30	0.727598566308244	8	1-4,2575-2572;6-12,2570-2564;14-21,2562-2555	5-5,2571-2571[SIL];13-13,2563-2563[SIL]	((((((((.(((((((.((((&)))).))))))).))))))))	GAGGAGGUUGCGAAGGAGGAA&UUUUAUCUUCGUUACCUUUUC	2	0.962120194413448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6911_c0_g1_2566_TPlot.pdf
TRINITY_DN6911_c0_g1:2567	si_s803	TRINITY_DN6911_c0_g1	2556	2576	2567	-26.00	-17.10	0.657692307692308	8.5	2-5,2575-2572;7-13,2570-2564;15-21,2562-2556	1-1,2576-2576[UP5];6-6,2571-2571[SIL];14-14,2563-2563[SIL]	(((((((.(((((((.((((.&.)))).))))))).)))))))	AGGAGGUUGCGAAGGAGGAAA&AUUUUAUCUUCGUUACCUUUU	2	0.999999999276151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6911_c0_g1_2567_TPlot.pdf
TRINITY_DN6911_c0_g1:2568	si_s78	TRINITY_DN6911_c0_g1	2553	2577	2568	-26.20	-17.70	0.675572519083969	13.5	1-12,2577-2566;13-20,2561-2554	x-x,2565-2562[BULt];21-21,2553-2553[UP3]	.((((((((....((((((((((((&))))))))))))----)))))))).	UGGAGGAGGUUGCGAAGGAGGAAAA&UUUUUUUCUUUC----CUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6911_c0_g1_2568_TPlot.pdf
TRINITY_DN6911_c0_g1:2569	si_s77	TRINITY_DN6911_c0_g1	2554	2578	2569	-25.50	-17.70	0.694117647058824	9	1-13,2578-2566;14-21,2561-2554	x-x,2565-2562[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	GGAGGAGGUUGCGAAGGAGGAAAAG&UUUUUUUUCUUUC----CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6911_c0_g1_2569_TPlot.pdf
TRINITY_DN6911_c0_g1:2570	si_s76	TRINITY_DN6911_c0_g1	2555	2579	2570	-23.60	-15.60	0.661016949152542	10.5	2-14,2578-2566;15-21,2561-2555	1-1,2579-2579[UP5];x-x,2565-2562[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	GAGGAGGUUGCGAAGGAGGAAAAGG&AUUUUUUUUCUUUC----CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6911_c0_g1_2570_TPlot.pdf
TRINITY_DN6911_c0_g1:423	si_s87	TRINITY_DN6911_c0_g1	412	434	423	-32.90	-25.70	0.781155015197568	10.5	2-6,433-429;7-20,426-413	1-1,434-434[UP5];x-x,428-427[BULt];21-21,412-412[UP3]	.((((((((((((((..(((((.&.)))))--)))))))))))))).	CGGCGGAGGAGGAGGCGGAGGAU&UUCCUU--UCUUCUUCUUCGCUU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6911_c0_g1_423_TPlot.pdf
TRINITY_DN6911_c0_g1:429	si_s79	TRINITY_DN6911_c0_g1	417	438	429	-26.20	-17.60	0.67175572519084	15	6-11,433-428;12-21,426-417	1-5,438-434[UP5];x-x,427-427[BULt]	((((((((((.((((((.....&.....))))))-))))))))))	GAGGAGGAGGCGGAGGAUUCGG&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6911_c0_g1_429_TPlot.pdf
TRINITY_DN6911_c0_g1:440	si_a753	TRINITY_DN6911_c0_g1	429	449	440	-33.10	-22.40	0.676737160120846	11	5-21,445-429	1-4,449-446[UP5]	(((((((((((((((((....&....)))))))))))))))))	GAGGAUUCGGAGGAGGUGGUG&AUGAACCUCCUUUGGGUUUUU	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN6911_c0_g1_440_TPlot.pdf
TRINITY_DN6911_c0_g1:442	si_a751	TRINITY_DN6911_c0_g1	431	450	442	-37.20	-25.00	0.672043010752688	8	1-4,450-447;7-21,445-431	5-6,446-446[AILq]	(((((((((((((((.-((((&))))..)))))))))))))))	GGAUUCGGAGGAGGUG-GUGG&CCAUGAACCUCCUUUGGGUUU	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN6911_c0_g1_442_TPlot.pdf
TRINITY_DN6911_c0_g1:452	si_s805	TRINITY_DN6911_c0_g1	437	461	452	-28.60	-18.80	0.657342657342657	16.5	3-9,459-453;11-12,451-450;13-21,445-437	1-2,461-460[UP5];10-10,452-452[SIL];x-x,449-446[BULt]	(((((((((....((.(((((((..&..))))))).))----)))))))))	GGAGGAGGUGGUGGAGGAGGAUAUG&UUUAUCUUCGUU----ACCUUUUCU	4	0.999999999998988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6911_c0_g1_452_TPlot.pdf
TRINITY_DN6911_c0_g1:454	si_a73	TRINITY_DN6911_c0_g1	443	463	454	-21.90	-14.40	0.657534246575343	10.5	1-4,463-460;6-8,458-456;10-21,454-443	5-5,459-459[SIL];9-9,455-455[SIL]	((((((((((((.(((.((((&)))).))).))))))))))))	GGUGGUGGAGGAGGAUAUGGA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN6911_c0_g1_454_TPlot.pdf
TRINITY_DN6911_c0_g1:455	si_a72	TRINITY_DN6911_c0_g1	444	464	455	-21.90	-14.50	0.662100456621005	10	1-5,464-460;7-9,458-456;11-21,454-444	6-6,459-459[SIL];10-10,455-455[SIL]	(((((((((((.(((.(((((&))))).))).)))))))))))	GUGGUGGAGGAGGAUAUGGAG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999999713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN6911_c0_g1_455_TPlot.pdf
TRINITY_DN6911_c0_g1:456	si_a71	TRINITY_DN6911_c0_g1	445	465	456	-23.30	-15.70	0.67381974248927	9.5	1-6,465-460;8-10,458-456;12-21,454-445	7-7,459-459[SIL];11-11,455-455[SIL]	((((((((((.(((.((((((&)))))).))).))))))))))	UGGUGGAGGAGGAUAUGGAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999999323675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN6911_c0_g1_456_TPlot.pdf
TRINITY_DN6911_c0_g1:460	si_s67	TRINITY_DN6911_c0_g1	448	469	460	-25.60	-17.40	0.6796875	9.5	1-2,469-468;4-11,466-459;12-20,457-449	3-3,467-467[SIL];x-x,458-458[BULt];21-21,448-448[UP3]	.(((((((((.((((((((.((&)).))))))))-))))))))).	UGGAGGAGGAUAUGGAGGUGGC&GCAACUUCUAU-UUUUUUUCUU	3	0.999999992006172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6911_c0_g1_460_TPlot.pdf
TRINITY_DN6911_c0_g1:464	si_s810	TRINITY_DN6911_c0_g1	449	473	464	-27.90	-19.70	0.706093189964158	17	1-12,473-462;13-17,457-453	x-x,461-458[BULt];18-21,452-449[UP3]	....(((((....((((((((((((&))))))))))))----)))))....	GGAGGAGGAUAUGGAGGUGGCGGAG&CUUCGUUACCUU----UUCUUAAUA	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN6911_c0_g1_464_TPlot.pdf
TRINITY_DN6911_c0_g1:465	si_s809	TRINITY_DN6911_c0_g1	450	474	465	-28.50	-19.80	0.694736842105263	12.5	2-13,473-462;14-18,457-453	1-1,474-474[UP5];x-x,461-458[BULt];19-21,452-450[UP3]	...(((((....((((((((((((.&.))))))))))))----)))))...	GAGGAGGAUAUGGAGGUGGCGGAGG&UCUUCGUUACCUU----UUCUUAAU	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6911_c0_g1_465_TPlot.pdf
TRINITY_DN6911_c0_g1:466	si_s808	TRINITY_DN6911_c0_g1	451	475	466	-28.60	-19.80	0.692307692307692	13.5	3-14,473-462;15-19,457-453	1-2,475-474[UP5];x-x,461-458[BULt];20-21,452-451[UP3]	..(((((....((((((((((((..&..))))))))))))----)))))..	AGGAGGAUAUGGAGGUGGCGGAGGA&AUCUUCGUUACCUU----UUCUUAA	4	0.999994185394833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6911_c0_g1_466_TPlot.pdf
TRINITY_DN6911_c0_g1:467	si_s807	TRINITY_DN6911_c0_g1	452	476	467	-28.90	-19.80	0.685121107266436	14.5	4-15,473-462;16-20,457-453	1-3,476-474[UP5];x-x,461-458[BULt];21-21,452-452[UP3]	.(((((....((((((((((((...&...))))))))))))----))))).	GGAGGAUAUGGAGGUGGCGGAGGAU&UAUCUUCGUUACCUU----UUCUUA	4	0.999999634212687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6911_c0_g1_467_TPlot.pdf
TRINITY_DN6911_c0_g1:475	si_s614	TRINITY_DN6911_c0_g1	463	484	475	-28.30	-18.50	0.653710247349823	9.5	1-12,484-473;15-16,469-468;18-21,466-463	13-14,472-470[AILt];17-17,467-467[SIL]	((((.((...((((((((((((&))))))))))))-..)).))))	AGGUGGCGGAGGAUUUGGAGGA&UUUUUUAAAUCC-AAGCGAUCU	3	0.990302083233156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN6911_c0_g1_475_TPlot.pdf
TRINITY_DN6911_c0_g1:476	si_s613	TRINITY_DN6911_c0_g1	464	485	476	-29.20	-20.40	0.698630136986301	8.5	1-13,485-473;16-17,469-468;19-21,466-464	14-15,472-470[AILt];18-18,467-467[SIL]	(((.((...(((((((((((((&)))))))))))))-..)).)))	GGUGGCGGAGGAUUUGGAGGAG&CUUUUUUAAAUCC-AAGCGAUC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN6911_c0_g1_476_TPlot.pdf
TRINITY_DN6911_c0_g1:477	si_a68	TRINITY_DN6911_c0_g1	466	486	477	-25.40	-18.20	0.716535433070866	7	1-13,486-474;15-17,472-470;19-21,468-466	14-14,473-473[SIL];18-18,469-469[SIL]	(((.(((.(((((((((((((&))))))))))))).))).)))	UGGCGGAGGAUUUGGAGGAGG&CUUCUUUCAAAUUGUUUUUCA	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN6911_c0_g1_477_TPlot.pdf
TRINITY_DN6911_c0_g1:481	si_a64	TRINITY_DN6911_c0_g1	470	491	481	-29.40	-20.50	0.697278911564626	9.5	1-3,491-489;5-17,486-474;19-21,472-470	4-4,488-487[AILt];18-18,473-473[SIL]	(((.(((((((((((((..(((&)))-.))))))))))))).)))	GGAGGAUUUGGAGGAGGAGGAG&CUC-GCUUCUUUCAAAUUGUUU	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN6911_c0_g1_481_TPlot.pdf
TRINITY_DN6911_c0_g1:482	si_a63	TRINITY_DN6911_c0_g1	471	492	482	-30.20	-20.30	0.672185430463576	10	2-4,491-489;6-18,486-474;20-21,472-471	1-1,492-492[UP5];5-5,488-487[AILt];19-19,473-473[SIL]	((.(((((((((((((..(((.&.)))-.))))))))))))).))	GAGGAUUUGGAGGAGGAGGAGG&ACUC-GCUUCUUUCAAAUUGUU	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN6911_c0_g1_482_TPlot.pdf
TRINITY_DN6911_c0_g1:483	si_s90	TRINITY_DN6911_c0_g1	468	492	483	-35.30	-23.20	0.657223796033994	10.5	1-15,492-478;16-20,473-469	x-x,477-474[BULt];21-21,468-468[UP3]	.(((((....(((((((((((((((&)))))))))))))))----))))).	GCGGAGGAUUUGGAGGAGGAGGAGG&CUUUCUUCUUCUUCG----CUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6911_c0_g1_483_TPlot.pdf
TRINITY_DN6911_c0_g1:487	si_s87	TRINITY_DN6911_c0_g1	476	497	487	-32.90	-22.30	0.677811550151976	9.5	1-6,497-492;7-17,490-480	x-x,491-491[BULt];18-21,479-476[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UUUGGAGGAGGAGGAGGAGGAA&UUCCUU-UCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6911_c0_g1_487_TPlot.pdf
TRINITY_DN6911_c0_g1:492	si_s79	TRINITY_DN6911_c0_g1	480	501	492	-26.20	-21.20	0.809160305343511	7.5	1-11,501-491;12-21,489-480	x-x,490-490[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	GAGGAGGAGGAGGAGGAAAAGG&UUUUUUCUUUC-CUUUCUUCUU	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6911_c0_g1_492_TPlot.pdf
TRINITY_DN6911_c0_g1:493	si_s75	TRINITY_DN6911_c0_g1	481	502	493	-24.00	-16.90	0.704166666666667	9.5	3-15,500-488;16-21,486-481	1-2,502-501[UP5];x-x,487-487[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGGAGGAGGAGGAGGAAAAGGU&UAUUUUUUUUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6911_c0_g1_493_TPlot.pdf
TRINITY_DN6911_c0_g1:631	si_s811	TRINITY_DN6911_c0_g1	620	640	631	-26.40	-18.40	0.696969696969697	10.5	1-12,640-629;14-17,627-624	13-13,628-628[SIL];18-21,623-620[UP3]	....((((.((((((((((((&)))))))))))).))))....	GGCCUAGGUGGAGGUGGCGGA&UUCGUUACCUUUUCUUAAUAA	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN6911_c0_g1_631_TPlot.pdf
TRINITY_DN6911_c0_g1:634	si_s808	TRINITY_DN6911_c0_g1	623	643	634	-28.60	-18.60	0.65034965034965	11.5	4-15,640-629;17-20,627-624	1-3,643-641[UP5];16-16,628-628[SIL];21-21,623-623[UP3]	.((((.((((((((((((...&...)))))))))))).)))).	CUAGGUGGAGGUGGCGGAUAC&AUCUUCGUUACCUUUUCUUAA	3	0.999999999999965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6911_c0_g1_634_TPlot.pdf
TRINITY_DN6911_c0_g1:649	si_a558	TRINITY_DN6911_c0_g1	637	658	649	-35.40	-23.10	0.652542372881356	8.5	1-12,658-647;13-17,645-641	x-x,646-646[BULt];18-21,640-637[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	CGGAUACGGAGGAGGUAAAGGA&UUCUUUAUCUCC-CCGUGAAUC	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN6911_c0_g1_649_TPlot.pdf
TRINITY_DN6911_c0_g1:650	si_a557	TRINITY_DN6911_c0_g1	638	659	650	-33.40	-23.50	0.703592814371258	7	1-13,659-647;14-18,645-641	x-x,646-646[BULt];19-21,640-638[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	GGAUACGGAGGAGGUAAAGGAG&UUUCUUUAUCUCC-CCGUGAAU	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN6911_c0_g1_650_TPlot.pdf
TRINITY_DN6911_c0_g1:651	si_a556	TRINITY_DN6911_c0_g1	639	660	651	-33.40	-23.50	0.703592814371258	7.5	2-14,659-647;15-19,645-641	1-1,660-660[UP5];x-x,646-646[BULt];20-21,640-639[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	GAUACGGAGGAGGUAAAGGAGG&AUUUCUUUAUCUCC-CCGUGAA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN6911_c0_g1_651_TPlot.pdf
TRINITY_DN6911_c0_g1:652	si_a555	TRINITY_DN6911_c0_g1	640	661	652	-33.70	-23.50	0.697329376854599	8.5	3-15,659-647;16-20,645-641	1-2,661-660[UP5];x-x,646-646[BULt];21-21,640-640[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	AUACGGAGGAGGUAAAGGAGGC&UAUUUCUUUAUCUCC-CCGUGA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN6911_c0_g1_652_TPlot.pdf
TRINITY_DN6911_c0_g1:653	si_a554	TRINITY_DN6911_c0_g1	641	663	653	-34.40	-23.60	0.686046511627907	9.5	1-2,663-662;4-16,659-647;17-21,645-641	3-3,661-660[AILt];x-x,646-646[BULt]	(((((.(((((((((((((..((&))-.)))))))))))))-)))))	UACGGAGGAGGUAAAGGAGGCGG&CU-AUUUCUUUAUCUCC-CCGUG	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN6911_c0_g1_653_TPlot.pdf
TRINITY_DN6911_c0_g1:654	si_a553	TRINITY_DN6911_c0_g1	642	664	654	-33.70	-22.80	0.676557863501484	9.5	2-3,663-662;5-17,659-647;18-21,645-642	1-1,664-664[UP5];4-4,661-660[AILt];x-x,646-646[BULt]	((((.(((((((((((((..((.&.))-.)))))))))))))-))))	ACGGAGGAGGUAAAGGAGGCGGU&UCU-AUUUCUUUAUCUCC-CCGU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN6911_c0_g1_654_TPlot.pdf
TRINITY_DN6911_c0_g1:655	si_a552	TRINITY_DN6911_c0_g1	643	664	655	-33.10	-22.20	0.670694864048338	8.5	1-3,664-662;6-18,659-647;19-21,645-643	4-5,661-660[SIL];x-x,646-646[BULt]	(((.(((((((((((((..(((&)))..)))))))))))))-)))	CGGAGGAGGUAAAGGAGGCGGU&AUCUAUUUCUUUAUCUCC-CCG	4	0.998647167707099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN6911_c0_g1_655_TPlot.pdf
TRINITY_DN6911_c0_g1:656	si_a551	TRINITY_DN6911_c0_g1	644	665	656	-31.60	-20.70	0.65506329113924	8.5	1-4,665-662;7-19,659-647;20-21,645-644	5-6,661-660[SIL];x-x,646-646[BULt]	((.(((((((((((((..((((&))))..)))))))))))))-))	GGAGGAGGUAAAGGAGGCGGUU&AAUCUAUUUCUUUAUCUCC-CC	3	0.999973191934157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN6911_c0_g1_656_TPlot.pdf
TRINITY_DN6911_c0_g1:666	si_a67	TRINITY_DN6911_c0_g1	655	676	666	-27.20	-20.30	0.746323529411765	9	1-9,676-668;10-20,666-656	x-x,667-667[BULt];21-21,655-655[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AGGAGGCGGUUUCGGAGGAGGC&GCUUCUUUC-AAAUUGUUUUUC	4	0.982506088446625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN6911_c0_g1_666_TPlot.pdf
TRINITY_DN6911_c0_g1:669	si_a65	TRINITY_DN6911_c0_g1	657	678	669	-27.70	-22.40	0.808664259927798	8	1-11,678-668;12-21,666-657	x-x,667-667[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	GAGGCGGUUUCGGAGGAGGCGG&UCGCUUCUUUC-AAAUUGUUUU	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN6911_c0_g1_669_TPlot.pdf
TRINITY_DN6911_c0_g1:670	si_a64	TRINITY_DN6911_c0_g1	658	679	670	-29.40	-21.30	0.724489795918367	9	2-12,678-668;13-21,666-658	1-1,679-679[UP5];x-x,667-667[BULt]	(((((((((.(((((((((((.&.)))))))))))-)))))))))	AGGCGGUUUCGGAGGAGGCGGU&CUCGCUUCUUUC-AAAUUGUUU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN6911_c0_g1_670_TPlot.pdf
TRINITY_DN6911_c0_g1:671	si_a63	TRINITY_DN6911_c0_g1	659	680	671	-30.20	-20.50	0.678807947019868	10	3-13,678-668;14-21,666-659	1-2,680-679[UP5];x-x,667-667[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	GGCGGUUUCGGAGGAGGCGGUC&ACUCGCUUCUUUC-AAAUUGUU	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN6911_c0_g1_671_TPlot.pdf
TRINITY_DN6911_c0_g1:672	si_a62	TRINITY_DN6911_c0_g1	660	680	672	-32.20	-23.90	0.74223602484472	7	1-3,680-678;5-14,677-668;15-21,666-660	4-4,x-x[BULq];x-x,667-667[BULt]	(((((((.((((((((((-(((&))).))))))))))-)))))))	GCGGUUUCGGAGGAGGCG-GUC&GACUCGCUUCUUUC-AAAUUGU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN6911_c0_g1_672_TPlot.pdf
TRINITY_DN6911_c0_g1:673	si_a61	TRINITY_DN6911_c0_g1	661	681	673	-32.90	-22.40	0.680851063829787	7.5	2-4,680-678;6-15,677-668;16-21,666-661	1-1,681-681[UP5];5-5,x-x[BULq];x-x,667-667[BULt]	((((((.((((((((((-(((.&.))).))))))))))-))))))	CGGUUUCGGAGGAGGCG-GUCA&CGACUCGCUUCUUUC-AAAUUG	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN6911_c0_g1_673_TPlot.pdf
TRINITY_DN6911_c0_g1:690	si_a739	TRINITY_DN6911_c0_g1	677	701	690	-41.50	-27.60	0.665060240963855	9.5	1-7,701-695;8-9,693-692;10-16,690-684;18-18,682-682;19-21,679-677	x-x,694-694[BULt];x-x,691-691[BULt];17-17,683-683[SIL];x-x,681-680[BULt]	(((..(.(((((((.((.(((((((&)))))))-))-))))))).)--)))	GGUCAUGGUGGCCACGGAGGUGGAG&CUUUACC-CC-UGGCCAUGA--ACC	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a739_TRINITY_DN6911_c0_g1_690_TPlot.pdf
TRINITY_DN6911_c0_g1:692	si_a738	TRINITY_DN6911_c0_g1	680	702	692	-40.10	-26.70	0.665835411471322	9.5	1-8,702-695;9-10,693-692;11-17,690-684;19-19,682-682	x-x,694-694[BULt];x-x,691-691[BULt];18-18,683-683[SIL];20-21,681-680[UP3]	..(.(((((((.((.((((((((&))))))))-))-))))))).)..	CAUGGUGGCCACGGAGGUGGAGA&UCUUUACC-CC-UGGCCAUGAAC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a738_TRINITY_DN6911_c0_g1_692_TPlot.pdf
TRINITY_DN6911_c0_g1:693	si_a737	TRINITY_DN6911_c0_g1	681	703	693	-38.60	-26.70	0.691709844559585	9.5	2-9,702-695;10-11,693-692;12-18,690-684;20-20,682-682	1-1,703-703[UP5];x-x,694-694[BULt];x-x,691-691[BULt];19-19,683-683[SIL];21-21,681-681[UP3]	.(.(((((((.((.((((((((.&.))))))))-))-))))))).).	AUGGUGGCCACGGAGGUGGAGAA&AUCUUUACC-CC-UGGCCAUGAA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a737_TRINITY_DN6911_c0_g1_693_TPlot.pdf
TRINITY_DN6911_c0_g1:695	si_a736	TRINITY_DN6911_c0_g1	682	704	695	-40.20	-26.50	0.659203980099502	10.5	3-10,702-695;11-12,693-692;13-19,690-684;21-21,682-682	1-2,704-703[UP5];x-x,694-694[BULt];x-x,691-691[BULt];20-20,683-683[SIL]	(.(((((((.((.((((((((..&..))))))))-))-))))))).)	UGGUGGCCACGGAGGUGGAGAAU&CAUCUUUACC-CC-UGGCCAUGA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN6911_c0_g1_695_TPlot.pdf
TRINITY_DN6911_c0_g1:702	si_a549	TRINITY_DN6911_c0_g1	692	711	702	-29.50	-19.50	0.661016949152542	6.5	1-5,711-707;7-10,705-702;12-21,701-692	6-6,706-706[SIL];11-11,x-x[BULq]	((((((((((-((((.(((((&))))).)))).))))))))))	GGAGGUGGAG-AAUAUGUUGA&UCAAUCUAUUUCUUUAUCUCC	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN6911_c0_g1_702_TPlot.pdf
TRINITY_DN6911_c0_g1:729	si_a749	TRINITY_DN6911_c0_g1	717	746	729	-42.10	-27.50	0.653206650831354	20.5	1-6,746-741;7-9,733-731;10-18,729-721;19-21,719-717	x-x,740-734[BULt];x-x,730-730[BULt];x-x,720-720[BULt]	(((.(((((((((.(((.......((((((&))))))-------)))-)))))))))-)))	GCCACGGAGGAGGAUUUGGUGACGGUGGCC&GGCCAU-------GAA-CCUCCUUUG-GGU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN6911_c0_g1_729_TPlot.pdf
TRINITY_DN6911_c0_g1:918	si_s87	TRINITY_DN6911_c0_g1	907	929	918	-32.90	-21.80	0.662613981762918	12	1-5,929-925;7-9,922-920;10-20,918-908	6-6,924-923[AILt];x-x,919-919[BULt];21-21,907-907[UP3]	.(((((((((((.(((..(((((&)))))-.)))-))))))))))).	UGGCGGAGGAGGUGGACUGGGAG&UUCCU-UUCU-UCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6911_c0_g1_918_TPlot.pdf
TRINITY_DN6911_c0_g1:923	si_s83	TRINITY_DN6911_c0_g1	912	932	923	-30.90	-21.80	0.705501618122977	9	1-8,932-925;11-13,922-920;15-21,918-912	9-10,924-923[SIL];14-14,919-919[SIL]	(((((((.(((..((((((((&))))))))..))).)))))))	GAGGAGGUGGACUGGGAGGAG&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999999956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6911_c0_g1_923_TPlot.pdf
TRINITY_DN6911_c0_g1:924	si_s82	TRINITY_DN6911_c0_g1	913	933	924	-28.90	-19.00	0.657439446366782	10.5	2-9,932-925;12-14,922-920;16-21,918-913	1-1,933-933[UP5];10-11,924-923[SIL];15-15,919-919[SIL]	((((((.(((..((((((((.&.))))))))..))).))))))	AGGAGGUGGACUGGGAGGAGG&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN6911_c0_g1_924_TPlot.pdf
TRINITY_DN6911_c0_g1:932	si_s813	TRINITY_DN6911_c0_g1	921	941	932	-27.10	-18.00	0.664206642066421	10.5	1-14,941-928	15-21,927-921[UP3]	.......((((((((((((((&)))))))))))))).......	GACUGGGAGGAGGAGGUAAUG&CGUUACCUUUUCUUAAUAAUG	4	0.997869551995986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN6911_c0_g1_932_TPlot.pdf
TRINITY_DN6911_c0_g1:934	si_s811	TRINITY_DN6911_c0_g1	923	943	934	-26.40	-18.30	0.693181818181818	10.5	2-16,942-928	1-1,943-943[UP5];17-21,927-923[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUGGGAGGAGGAGGUAAUGGC&UUCGUUACCUUUUCUUAAUAA	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN6911_c0_g1_934_TPlot.pdf
TRINITY_DN6911_c0_g1:935	si_s810	TRINITY_DN6911_c0_g1	924	944	935	-27.90	-18.50	0.663082437275986	10	1-1,944-944;3-17,942-928	2-2,943-943[SIL];18-21,927-924[UP3]	....(((((((((((((((.(&).)))))))))))))))....	UGGGAGGAGGAGGUAAUGGCG&CUUCGUUACCUUUUCUUAAUA	3	0.999999990212477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN6911_c0_g1_935_TPlot.pdf
TRINITY_DN6911_c0_g1:936	si_s809	TRINITY_DN6911_c0_g1	925	945	936	-28.50	-18.70	0.656140350877193	9	1-2,945-944;4-18,942-928	3-3,943-943[SIL];19-21,927-925[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	GGGAGGAGGAGGUAAUGGCGG&UCUUCGUUACCUUUUCUUAAU	3	0.99999999998526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6911_c0_g1_936_TPlot.pdf
TRINITY_DN6911_c0_g1:937	si_s808	TRINITY_DN6911_c0_g1	926	955	937	-28.60	-19.00	0.664335664335664	23.5	1-8,955-948;9-19,938-928	x-x,947-939[BULt];20-21,927-926[UP3]	..(((((((((((.........((((((((&))))))))---------)))))))))))..	GGAGGAGGAGGUAAUGGCGGCCACGGAGGU&AUCUUCGU---------UACCUUUUCUUAA	3	0.999999999915938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6911_c0_g1_937_TPlot.pdf
TRINITY_DN6911_c0_g1:938	si_s807	TRINITY_DN6911_c0_g1	927	956	938	-28.90	-19.80	0.685121107266436	23	1-9,956-948;10-20,938-928	x-x,947-939[BULt];21-21,927-927[UP3]	.(((((((((((.........(((((((((&)))))))))---------))))))))))).	GAGGAGGAGGUAAUGGCGGCCACGGAGGUG&UAUCUUCGU---------UACCUUUUCUUA	3	0.999998927568074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6911_c0_g1_938_TPlot.pdf
TRINITY_DN6911_c0_g1:949	si_s805	TRINITY_DN6911_c0_g1	929	958	949	-28.60	-20.60	0.72027972027972	23.5	1-11,958-948;12-21,938-929	x-x,947-939[BULt]	((((((((((.........(((((((((((&)))))))))))---------))))))))))	GGAGGAGGUAAUGGCGGCCACGGAGGUGGA&UUUAUCUUCGU---------UACCUUUUCU	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN6911_c0_g1_949_TPlot.pdf
TRINITY_DN6911_c0_g1:960	si_s803	TRINITY_DN6911_c0_g1	949	969	960	-26.00	-18.10	0.696153846153846	12	4-11,966-959;13-20,957-950	1-3,969-967[UP5];12-12,958-958[SIL];21-21,949-949[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	CGGAGGUGGAGGAGAUGAUUA&AUUUUAUCUUCGUUACCUUUU	3	0.999999811949203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN6911_c0_g1_960_TPlot.pdf
TRINITY_DN6911_c0_g1:961	si_s802	TRINITY_DN6911_c0_g1	950	970	961	-26.40	-18.10	0.685606060606061	12	5-12,966-959;14-21,957-950	1-4,970-967[UP5];13-13,958-958[SIL]	((((((((.((((((((....&....)))))))).))))))))	GGAGGUGGAGGAGAUGAUUAU&UAUUUUAUCUUCGUUACCUUU	3	0.999999492923785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN6911_c0_g1_961_TPlot.pdf
TRINITY_DN6911_c0_g1:967	si_a552	TRINITY_DN6911_c0_g1	955	979	967	-33.10	-21.84	0.659818731117825	10.5	1-9,979-971;11-18,966-959;19-21,957-955	10-10,970-967[AILt];x-x,958-958[BULt]	(((.((((((((....(((((((((&)))))))))---.))))))))-)))	UGGAGGAGAUGAUUAUGAAAUAGAU&AUCUAUUUC---UUUAUCUCC-CCG	3	0.999649390467505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN6911_c0_g1_967_TPlot.pdf
TRINITY_DN6911_c0_g1:971	si_a551	TRINITY_DN6911_c0_g1	956	980	971	-31.60	-21.44	0.678481012658228	10.5	2-10,979-971;12-19,966-959;20-21,957-956	1-1,980-980[UP5];11-11,970-967[AILt];x-x,958-958[BULt]	((.((((((((....(((((((((.&.)))))))))---.))))))))-))	GGAGGAGAUGAUUAUGAAAUAGAUG&AAUCUAUUUC---UUUAUCUCC-CC	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN6911_c0_g1_971_TPlot.pdf
TRINITY_DN6911_c0_g1:973	si_a549	TRINITY_DN6911_c0_g1	959	982	973	-29.50	-19.74	0.669152542372881	9.5	1-2,982-981;4-12,979-971;14-21,966-959	3-3,980-980[SIL];13-13,970-967[AILt]	((((((((....(((((((((.((&)).)))))))))---.))))))))	GGAGAUGAUUAUGAAAUAGAUGGA&UCAAUCUAUUUC---UUUAUCUCC	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN6911_c0_g1_973_TPlot.pdf
TRINITY_DN69137_c0_g1:198	si_s79	TRINITY_DN69137_c0_g1	185	207	198	-26.20	-17.40	0.66412213740458	12.5	6-13,202-195;14-20,192-186	1-5,207-203[UP5];x-x,194-193[BULt];21-21,185-185[UP3]	.(((((((..((((((((.....&.....))))))))--))))))).	CGGAAGAAUUAGGAAAGAUAUCG&UUUUUUCUUUCCU--UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN69137_c0_g1_198_TPlot.pdf
TRINITY_DN6915_c0_g2:1386	si_s895	TRINITY_DN6915_c0_g2	1375	1395	1386	-31.10	-21.10	0.678456591639871	7	1-14,1395-1382	15-21,1381-1375[UP3]	.......((((((((((((((&)))))))))))))).......	CUGGUAAAAGAGAAAGCCUAU&AUAGGCUUUCUCUUCAAUUUC	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN6915_c0_g2_1386_TPlot.pdf
TRINITY_DN6915_c0_g2:416	si_s489	TRINITY_DN6915_c0_g2	405	425	416	-17.90	-13.20	0.737430167597765	12.5	5-19,421-407	1-4,425-422[UP5];20-21,406-405[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGUGUUUGUGUUUGAGUCUUU&AUUUAUUUAAAUAUAAACAAA	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN6915_c0_g2_416_TPlot.pdf
TRINITY_DN6916_c0_g1:397	si_a78	TRINITY_DN6916_c0_g1	386	406	397	-22.30	-16.10	0.721973094170404	5	1-16,406-391;19-20,388-387	17-18,390-389[SIL];21-21,386-386[UP3]	.((..((((((((((((((((&))))))))))))))))..)).	CUCACAGUGGUGAAAAACAAU&AUUGUUUUUCAUUAUUAAGAA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN6916_c0_g1_397_TPlot.pdf
TRINITY_DN691_c0_g1:2114	si_s69	TRINITY_DN691_c0_g1	2103	2123	2114	-23.40	-15.90	0.67948717948718	7.5	3-13,2121-2111;15-20,2109-2104	1-2,2123-2122[UP5];14-14,2110-2110[SIL];21-21,2103-2103[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	CAAGGGAUGAAGAUAGAAGCA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN691_c0_g1_2114_TPlot.pdf
TRINITY_DN691_c0_g1:2115	si_s68	TRINITY_DN691_c0_g1	2104	2124	2115	-23.10	-15.90	0.688311688311688	8.5	4-14,2121-2111;16-21,2109-2104	1-3,2124-2122[UP5];15-15,2110-2110[SIL]	((((((.(((((((((((...&...))))))))))).))))))	AAGGGAUGAAGAUAGAAGCAG&CAACUUCUAUUUUUUUUCUUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN691_c0_g1_2115_TPlot.pdf
TRINITY_DN691_c0_g1:2118	si_s65	TRINITY_DN691_c0_g1	2107	2127	2118	-26.00	-17.30	0.665384615384615	7	1-4,2127-2124;7-17,2121-2111;19-21,2109-2107	5-6,2123-2122[SIL];18-18,2110-2110[SIL]	(((.(((((((((((..((((&))))..))))))))))).)))	GGAUGAAGAUAGAAGCAGCUG&UAGCAACUUCUAUUUUUUUUC	4	0.999999387155625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN691_c0_g1_2118_TPlot.pdf
TRINITY_DN691_c0_g1:2362	si_s68	TRINITY_DN691_c0_g1	2351	2371	2362	-23.10	-16.80	0.727272727272727	7	5-21,2367-2351	1-4,2371-2368[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAAAAAAAAUAGAAAAAA&CAACUUCUAUUUUUUUUCUUU	2	0.999808945226155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN691_c0_g1_2362_TPlot.pdf
TRINITY_DN691_c0_g1:2968	si_a620	TRINITY_DN691_c0_g1	2959	2977	2968	-36.40	-23.78	0.653296703296703	5	1-12,2977-2966;17-21,2963-2959	13-16,2965-2964[AILq]	(((((..--((((((((((((&))))))))))))....)))))	UGAUACC--ACGCCUAGUCGA&UCGACUAGGCGUAUUAUGUCG	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a620_TRINITY_DN691_c0_g1_2968_TPlot.pdf
TRINITY_DN691_c0_g1:2969	si_a619	TRINITY_DN691_c0_g1	2960	2978	2969	-35.10	-24.38	0.694586894586894	4.5	1-13,2978-2966;18-21,2963-2960	14-17,2965-2964[AILq]	((((..--(((((((((((((&)))))))))))))....))))	GAUACC--ACGCCUAGUCGAU&AUCGACUAGGCGUAUUAUGUC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a619_TRINITY_DN691_c0_g1_2969_TPlot.pdf
TRINITY_DN691_c0_g1:2970	si_a618	TRINITY_DN691_c0_g1	2956	2979	2970	-33.10	-24.40	0.737160120845921	7	2-14,2978-2966;15-19,2962-2958	1-1,2979-2979[UP5];x-x,2965-2963[BULt];20-21,2957-2956[UP3]	..(((((...(((((((((((((.&.)))))))))))))---)))))..	AAGUGAUACCACGCCUAGUCGAUG&AAUCGACUAGGCGU---AUUAUGU	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a618_TRINITY_DN691_c0_g1_2970_TPlot.pdf
TRINITY_DN691_c0_g1:2971	si_a617	TRINITY_DN691_c0_g1	2957	2980	2971	-34.00	-24.40	0.717647058823529	8	3-15,2978-2966;16-20,2962-2958	1-2,2980-2979[UP5];x-x,2965-2963[BULt];21-21,2957-2957[UP3]	.(((((...(((((((((((((..&..)))))))))))))---))))).	AGUGAUACCACGCCUAGUCGAUGC&CAAUCGACUAGGCGU---AUUAUG	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a617_TRINITY_DN691_c0_g1_2971_TPlot.pdf
TRINITY_DN691_c0_g1:2973	si_a615	TRINITY_DN691_c0_g1	2962	2982	2973	-35.50	-24.10	0.67887323943662	11	5-17,2978-2966	1-4,2982-2979[UP5];18-21,2965-2962[UP3]	....(((((((((((((....&....)))))))))))))....	UACCACGCCUAGUCGAUGCCU&UCCAAUCGACUAGGCGUAUUA	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a615_TRINITY_DN691_c0_g1_2973_TPlot.pdf
TRINITY_DN691_c0_g1:2974	si_a614	TRINITY_DN691_c0_g1	2963	2988	2974	-35.20	-24.32	0.690909090909091	16	1-4,2988-2985;6-18,2978-2966	5-5,2984-2979[AILt];19-21,2965-2963[UP3]	...(((((((((((((......((((&))))-----.)))))))))))))...	ACCACGCCUAGUCGAUGCCUCAGGGA&UUCC-----AAUCGACUAGGCGUAUU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a614_TRINITY_DN691_c0_g1_2974_TPlot.pdf
TRINITY_DN691_c0_g1:2975	si_a613	TRINITY_DN691_c0_g1	2964	2990	2975	-35.30	-25.36	0.718413597733711	17	1-5,2990-2986;7-19,2978-2966	6-6,2985-2979[AILt];20-21,2965-2964[UP3]	..(((((((((((((.......(((((&)))))------.)))))))))))))..	CCACGCCUAGUCGAUGCCUCAGGGAGU&AUUCC------AAUCGACUAGGCGUAU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a613_TRINITY_DN691_c0_g1_2975_TPlot.pdf
TRINITY_DN691_c0_g1:2977	si_a611	TRINITY_DN691_c0_g1	2966	2992	2977	-36.40	-25.36	0.696703296703297	18	3-7,2990-2986;9-21,2978-2966	1-2,2992-2991[UP5];8-8,2985-2979[AILt]	(((((((((((((.......(((((..&..)))))------.)))))))))))))	ACGCCUAGUCGAUGCCUCAGGGAGUAC&CAAUUCC------AAUCGACUAGGCGU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN691_c0_g1_2977_TPlot.pdf
TRINITY_DN691_c0_g1:3013	si_s567	TRINITY_DN691_c0_g1	3002	3022	3013	-30.60	-21.20	0.69281045751634	8.5	1-15,3022-3008	16-21,3007-3002[UP3]	......(((((((((((((((&)))))))))))))))......	AGGGGAUCUUUGUCCUGAAGA&UUUUCGGGACAAGGAAUAAAA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN691_c0_g1_3013_TPlot.pdf
TRINITY_DN691_c0_g1:3015	si_s565	TRINITY_DN691_c0_g1	3004	3024	3015	-31.10	-21.20	0.681672025723473	9.5	3-17,3022-3008	1-2,3024-3023[UP5];18-21,3007-3004[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGGAUCUUUGUCCUGAAGAAU&UAUUUUCGGGACAAGGAAUAA	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s565_TRINITY_DN691_c0_g1_3015_TPlot.pdf
TRINITY_DN691_c0_g1:3017	si_s563	TRINITY_DN691_c0_g1	3006	3026	3017	-30.80	-21.20	0.688311688311688	11.5	5-19,3022-3008	1-4,3026-3023[UP5];20-21,3007-3006[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAUCUUUGUCCUGAAGAAUGG&AAUAUUUUCGGGACAAGGAAU	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN691_c0_g1_3017_TPlot.pdf
TRINITY_DN691_c0_g1:3018	si_s562	TRINITY_DN691_c0_g1	3007	3027	3018	-31.10	-21.20	0.681672025723473	12.5	6-20,3022-3008	1-5,3027-3023[UP5];21-21,3007-3007[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUCUUUGUCCUGAAGAAUGGA&UAAUAUUUUCGGGACAAGGAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s562_TRINITY_DN691_c0_g1_3018_TPlot.pdf
TRINITY_DN691_c0_g1:3458	si_a784	TRINITY_DN691_c0_g1	3447	3467	3458	-24.70	-16.30	0.659919028340081	8.5	2-11,3466-3457;13-16,3455-3452	1-1,3467-3467[UP5];12-12,3456-3456[SIL];17-21,3451-3447[UP3]	.....((((.((((((((((.&.)))))))))).)))).....	UGAAAAGAGUAAUAGAAGAGC&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN691_c0_g1_3458_TPlot.pdf
TRINITY_DN6920_c0_g1:1796	si_s47	TRINITY_DN6920_c0_g1	1785	1805	1796	-26.30	-17.28	0.657034220532319	5.5	1-14,1805-1792;18-20,1788-1786	15-17,1791-1789[SIL];21-21,1785-1785[UP3]	.(((...((((((((((((((&))))))))))))))...))).	UUGAAGGGAAAUCCAAUUGUU&AAUAAUUGGAUUUCAAGUUAG	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN6920_c0_g1_1796_TPlot.pdf
TRINITY_DN6920_c0_g1:1931	si_a75	TRINITY_DN6920_c0_g1	1920	1940	1931	-21.30	-13.90	0.652582159624413	14.5	7-21,1934-1920	1-6,1940-1935[UP5]	(((((((((((((((......&......)))))))))))))))	UUGAUAAUGGGAGACCUGAAU&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN6920_c0_g1_1931_TPlot.pdf
TRINITY_DN6920_c0_g1:2496	si_s73	TRINITY_DN6920_c0_g1	2482	2505	2496	-24.00	-15.90	0.6625	7	1-10,2505-2496;12-13,2494-2493;14-21,2489-2482	11-11,2495-2495[SIL];x-x,2492-2490[BULt]	((((((((...((.((((((((((&)))))))))).))---))))))))	AAAGGAAAAACGACAAAGAGUAGA&UCUAUUUUUUUUC---UUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN6920_c0_g1_2496_TPlot.pdf
TRINITY_DN6920_c0_g1:2836	si_a787	TRINITY_DN6920_c0_g1	2825	2846	2836	-26.30	-20.00	0.760456273764259	8	1-4,2846-2843;5-16,2841-2830;18-21,2828-2825	x-x,2842-2842[BULt];17-17,2829-2829[SIL]	((((.((((((((((((.((((&))))-)))))))))))).))))	UGGAUGAUGGAAAGGUGCGAGG&CUUC-UAUUUUUCUAUUUUCCA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN6920_c0_g1_2836_TPlot.pdf
TRINITY_DN6920_c0_g1:2838	si_a785	TRINITY_DN6920_c0_g1	2827	2848	2838	-25.90	-17.20	0.664092664092664	9	2-6,2847-2843;7-18,2841-2830;20-21,2828-2827	1-1,2848-2848[UP5];x-x,2842-2842[BULt];19-19,2829-2829[SIL]	((.((((((((((((.(((((.&.)))))-)))))))))))).))	GAUGAUGGAAAGGUGCGAGGAA&CUCUUC-UAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6920_c0_g1_2838_TPlot.pdf
TRINITY_DN6920_c0_g1:2839	si_s809	TRINITY_DN6920_c0_g1	2828	2847	2839	-28.50	-19.20	0.673684210526316	9.5	1-7,2847-2841;9-16,2840-2833	8-8,x-x[BULq];17-21,2832-2828[UP3]	.....((((((((-(((((((&))))))).)))))))).....	AUGAUGGAAAGGU-GCGAGGA&UCUUCGUUACCUUUUCUUAAU	4	0.999999949580118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6920_c0_g1_2839_TPlot.pdf
TRINITY_DN6920_c0_g1:2843	si_s804	TRINITY_DN6920_c0_g1	2833	2852	2843	-27.90	-18.80	0.673835125448029	12.5	6-12,2847-2841;14-21,2840-2833	1-5,2852-2848[UP5];13-13,x-x[BULq]	((((((((-(((((((.....&.....))))))).))))))))	GGAAAGGU-GCGAGGAACUCG&UUUUAUCUUCGUUACCUUUUC	2	0.999989222078021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN6920_c0_g1_2843_TPlot.pdf
TRINITY_DN6920_c0_g1:3344	si_a792	TRINITY_DN6920_c0_g1	3333	3353	3344	-27.60	-19.40	0.702898550724638	8	1-7,3353-3347;9-11,3345-3343;13-20,3341-3334	8-8,3346-3346[SIL];12-12,3342-3342[SIL];21-21,3333-3333[UP3]	.((((((((.(((.(((((((&))))))).))).)))))))).	AGGAUUGGAUGAUCGAAAGGU&AUUUUUCUAUUUUCCAAUCCG	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN6920_c0_g1_3344_TPlot.pdf
TRINITY_DN6920_c0_g1:5987	si_s75	TRINITY_DN6920_c0_g1	5976	5996	5987	-24.00	-16.60	0.691666666666667	11.5	3-7,5994-5990;10-20,5987-5977	1-2,5996-5995[UP5];8-9,5989-5988[SIL];21-21,5976-5976[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	UGGAAGGAAAGAUCGAAGGCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6920_c0_g1_5987_TPlot.pdf
TRINITY_DN6921_c0_g1:2049	si_a841	TRINITY_DN6921_c0_g1	2038	2058	2049	-29.20	-19.60	0.671232876712329	12.5	6-14,2053-2045;16-20,2043-2039	1-5,2058-2054[UP5];15-15,2044-2044[SIL];21-21,2038-2038[UP3]	.(((((.(((((((((.....&.....))))))))).))))).	CCGAGUCAGCAGCUUCCACGA&AAAUAGAAGUUGCUAACUUGA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN6921_c0_g1_2049_TPlot.pdf
TRINITY_DN6921_c0_g1:3807	si_a303	TRINITY_DN6921_c0_g1	3795	3816	3807	-28.40	-20.30	0.714788732394366	11	5-14,3812-3803;15-19,3801-3797	1-4,3816-3813[UP5];x-x,3802-3802[BULt];20-21,3796-3795[UP3]	..(((((.((((((((((....&....))))))))))-)))))..	AAAAAUCUCAAGCGAGUCGCAC&AAAAGAUUCGCUUG-GAUUUAU	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a303_TRINITY_DN6921_c0_g1_3807_TPlot.pdf
TRINITY_DN6921_c0_g1:3809	si_a301	TRINITY_DN6921_c0_g1	3797	3818	3809	-27.80	-20.00	0.719424460431655	13	7-16,3812-3803;17-21,3801-3797	1-6,3818-3813[UP5];x-x,3802-3802[BULt]	(((((.((((((((((......&......))))))))))-)))))	AAAUCUCAAGCGAGUCGCACAA&AAAAAAGAUUCGCUUG-GAUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a301_TRINITY_DN6921_c0_g1_3809_TPlot.pdf
TRINITY_DN6924_c0_g1:852	si_s890	TRINITY_DN6924_c0_g1	841	861	852	-29.50	-20.10	0.68135593220339	16	9-21,853-841	1-8,861-854[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGAAAGCUCAACGUCU&AAUAAAUAGGCUUUCUCUUCA	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN6924_c0_g1_852_TPlot.pdf
TRINITY_DN692_c0_g1:107	si_s245	TRINITY_DN692_c0_g1	96	116	107	-33.20	-21.80	0.656626506024096	4.5	1-9,116-108;11-13,106-104;15-20,102-97	10-10,107-107[SIL];14-14,103-103[SIL];21-21,96-96[UP3]	.((((((.(((.(((((((((&))))))))).))).)))))).	AAUAUUGUGAAUUGCCUAUUG&CAAUAGGCAUUUCCCGAUAUA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN692_c0_g1_107_TPlot.pdf
TRINITY_DN692_c0_g1:4341	si_a142	TRINITY_DN692_c0_g1	4330	4353	4341	-23.50	-15.30	0.651063829787234	11.5	1-6,4353-4348;7-18,4344-4333	x-x,4347-4345[BULt];19-21,4332-4330[UP3]	...((((((((((((...((((((&))))))---))))))))))))...	CAUAAACGACAACGACCAUUGGUU&AAUUAA---UCGUUGUUGUUUUAA	2	0.999999999985466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN692_c0_g1_4341_TPlot.pdf
TRINITY_DN692_c0_g1:5713	si_a785	TRINITY_DN692_c0_g1	5702	5723	5713	-25.90	-18.10	0.698841698841699	10	1-7,5723-5717;10-20,5713-5703	8-9,5716-5714[AILt];21-21,5702-5702[UP3]	.(((((((((((...(((((((&)))))))-..))))))))))).	UGAAAUGGAAGAUGAGGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	4	0.999999999853598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN692_c0_g1_5713_TPlot.pdf
TRINITY_DN692_c0_g1:5720	si_a786	TRINITY_DN692_c0_g1	5708	5728	5720	-26.60	-18.20	0.684210526315789	7.5	1-6,5728-5723;8-14,5722-5716;15-21,5714-5708	7-7,x-x[BULq];x-x,5715-5715[BULt]	(((((((.(((((((-((((((&)))))).)))))))-)))))))	GGAAGAUGAGGAAGA-GGAGGA&UCUUCUAUUUUUCU-AUUUUCC	3	0.99999999940103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN692_c0_g1_5720_TPlot.pdf
TRINITY_DN692_c0_g1:5739	si_s68	TRINITY_DN692_c0_g1	5727	5748	5739	-23.10	-15.90	0.688311688311688	11	4-11,5745-5738;12-21,5736-5727	1-3,5748-5746[UP5];x-x,5737-5737[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	GAAGAAGAAAUGAUGGAGGAAG&CAACUUCUAUU-UUUUUUCUUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN692_c0_g1_5739_TPlot.pdf
TRINITY_DN692_c1_g1:1199	si_a318	TRINITY_DN692_c1_g1	1188	1208	1199	-22.50	-16.40	0.728888888888889	7	2-17,1207-1192;19-20,1190-1189	1-1,1208-1208[UP5];18-18,1191-1191[SIL];21-21,1188-1188[UP3]	.((.((((((((((((((((.&.)))))))))))))))).)).	UUAUGAAGAUUAUGGAUGAGG&AUUUAUCCAUGAUUUUUUUAU	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN692_c1_g1_1199_TPlot.pdf
TRINITY_DN692_c1_g1:1218	si_a786	TRINITY_DN692_c1_g1	1207	1227	1218	-26.60	-17.30	0.650375939849624	5.5	1-6,1227-1222;8-12,1220-1216;14-21,1214-1207	7-7,1221-1221[SIL];13-13,1215-1215[SIL]	((((((((.(((((.((((((&)))))).))))).))))))))	GGAAAAUGUAGAAAAGGAAGA&UCUUCUAUUUUUCUAUUUUCC	2	0.999999999988809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN692_c1_g1_1218_TPlot.pdf
TRINITY_DN692_c1_g1:1345	si_a787	TRINITY_DN692_c1_g1	1335	1354	1345	-26.30	-17.60	0.669201520912548	6.5	1-5,1354-1350;7-12,1348-1343;14-20,1342-1336	6-6,1349-1349[SIL];13-13,x-x[BULq];21-21,1335-1335[UP3]	.(((((((-((((((.(((((&))))).)))))).))))))).	AGGAAGAU-GAAGAAAAGGAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN692_c1_g1_1345_TPlot.pdf
TRINITY_DN692_c1_g1:1483	si_a784	TRINITY_DN692_c1_g1	1472	1493	1483	-24.70	-16.20	0.65587044534413	9.5	2-9,1492-1485;10-17,1483-1476	1-1,1493-1493[UP5];x-x,1484-1484[BULt];18-21,1475-1472[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	CGCUUGGAAAAAUUGGGAGAGA&ACUCUUCUA-UUUUUCUAUUUU	2	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN692_c1_g1_1483_TPlot.pdf
TRINITY_DN692_c1_g1:1495	si_s73	TRINITY_DN692_c1_g1	1484	1506	1495	-24.00	-18.70	0.779166666666667	11	1-8,1506-1499;9-19,1496-1486	x-x,1498-1497[BULt];20-21,1485-1484[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	UUGGGAGAGAAAGCGGAAGUGGA&UCUAUUUU--UUUUCUUUCCUUU	3	0.999979807954259	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN692_c1_g1_1495_TPlot.pdf
TRINITY_DN692_c1_g1:1499	si_s71	TRINITY_DN692_c1_g1	1486	1508	1499	-25.70	-19.50	0.75875486381323	10	2-10,1507-1499;11-21,1496-1486	1-1,1508-1508[UP5];x-x,1498-1497[BULt]	(((((((((((..(((((((((.&.)))))))))--)))))))))))	GGGAGAGAAAGCGGAAGUGGAAC&CUUCUAUUUU--UUUUCUUUCCU	2	0.998617708614551	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN692_c1_g1_1499_TPlot.pdf
TRINITY_DN692_c1_g1:1644	si_a785	TRINITY_DN692_c1_g1	1629	1654	1644	-25.90	-17.20	0.664092664092664	11.5	1-6,1654-1649;7-17,1647-1637;18-21,1632-1629	x-x,1648-1648[BULt];x-x,1636-1633[BULt]	((((....(((((((((((.((((((&))))))-)))))))))))----))))	GGAACUUCGUGGAGGAGUACGAGGAG&CUCUUC-UAUUUUUCUAU----UUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN692_c1_g1_1644_TPlot.pdf
TRINITY_DN692_c1_g1:1645	si_a784	TRINITY_DN692_c1_g1	1634	1655	1645	-24.70	-19.00	0.769230769230769	9.5	1-7,1655-1649;8-18,1647-1637	x-x,1648-1648[BULt];19-21,1636-1634[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	UUCGUGGAGGAGUACGAGGAGU&ACUCUUC-UAUUUUUCUAUUUU	3	0.995939016967491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN692_c1_g1_1645_TPlot.pdf
TRINITY_DN692_c1_g1:1646	si_a783	TRINITY_DN692_c1_g1	1635	1656	1646	-24.70	-19.20	0.777327935222672	9	2-8,1655-1649;9-19,1647-1637	1-1,1656-1656[UP5];x-x,1648-1648[BULt];20-21,1636-1635[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	UCGUGGAGGAGUACGAGGAGUA&AACUCUUC-UAUUUUUCUAUUU	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN692_c1_g1_1646_TPlot.pdf
TRINITY_DN692_c1_g1:1649	si_a781	TRINITY_DN692_c1_g1	1637	1658	1649	-27.40	-19.20	0.700729927007299	10.5	4-10,1655-1649;11-21,1647-1637	1-3,1658-1656[UP5];x-x,1648-1648[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GUGGAGGAGUACGAGGAGUACC&UCAACUCUUC-UAUUUUUCUAU	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN692_c1_g1_1649_TPlot.pdf
TRINITY_DN692_c1_g1:1650	si_a780	TRINITY_DN692_c1_g1	1638	1663	1650	-27.30	-18.20	0.666666666666667	13	1-4,1663-1660;5-11,1655-1649;12-21,1647-1638	x-x,1659-1656[BULt];x-x,1648-1648[BULt]	((((((((((.(((((((....((((&))))----)))))))-))))))))))	UGGAGGAGUACGAGGAGUACCAUGAA&UUCA----ACUCUUC-UAUUUUUCUA	3	0.999998789065877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN692_c1_g1_1650_TPlot.pdf
TRINITY_DN692_c1_g1:1652	si_a778	TRINITY_DN692_c1_g1	1640	1665	1652	-28.30	-20.80	0.734982332155477	11.5	1-6,1665-1660;7-13,1655-1649;14-21,1647-1640	x-x,1659-1656[BULt];x-x,1648-1648[BULt]	((((((((.(((((((....((((((&))))))----)))))))-))))))))	GAGGAGUACGAGGAGUACCAUGAAUC&GAUUCA----ACUCUUC-UAUUUUUC	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN692_c1_g1_1652_TPlot.pdf
TRINITY_DN692_c1_g1:1659	si_a324	TRINITY_DN692_c1_g1	1648	1669	1659	-27.50	-18.72	0.680727272727273	12	2-9,1668-1661;13-21,1656-1648	1-1,1669-1669[UP5];10-12,1660-1657[AILt]	(((((((((....((((((((.&.))))))))-...)))))))))	CGAGGAGUACCAUGAAUCGUGU&CCAUGAUUU-UUUUAUUCCUUG	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN692_c1_g1_1659_TPlot.pdf
TRINITY_DN692_c1_g1:2061	si_s526	TRINITY_DN692_c1_g1	2050	2070	2061	-25.60	-18.40	0.71875	10.5	4-6,2067-2065;9-21,2062-2050	1-3,2070-2068[UP5];7-8,2064-2063[SIL]	(((((((((((((..(((...&...)))..)))))))))))))	GGUCGAAGAUGAUGACGAUGU&AAUUCGAAAUCAUUUUUGAUC	4	0.837410652023611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN692_c1_g1_2061_TPlot.pdf
TRINITY_DN692_c1_g1:2126	si_a544	TRINITY_DN692_c1_g1	2116	2136	2126	-28.90	-19.00	0.657439446366782	7	1-3,2136-2134;4-12,2132-2124;14-21,2123-2116	x-x,2133-2133[BULt];13-13,x-x[BULq]	((((((((-(((((((((.(((&)))-))))))))).))))))))	UGAGGAAG-AGAUUGGGCGCGG&UCG-GUUCAAUCUAUUUCUUUA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN692_c1_g1_2126_TPlot.pdf
TRINITY_DN692_c1_g1:313	si_a76	TRINITY_DN692_c1_g1	302	322	313	-21.20	-14.90	0.702830188679245	10	4-18,319-305	1-3,322-320[UP5];19-21,304-302[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAGAAUAAUGGAAAGCAAGUG&AAAUUGUUUUUCAUUAUUAAG	4	0.999970300825585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN692_c1_g1_313_TPlot.pdf
TRINITY_DN692_c1_g1:320	si_a69	TRINITY_DN692_c1_g1	309	331	320	-24.00	-17.90	0.745833333333333	9	1-9,331-323;11-21,319-309	10-10,322-320[AILt]	(((((((((((...(((((((((&)))))))))--.)))))))))))	AUGGAAAGCAAGUGUUGAGAGGA&UUCUUUCAA--AUUGUUUUUCAU	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN692_c1_g1_320_TPlot.pdf
TRINITY_DN6931_c0_g2:2597	si_a152	TRINITY_DN6931_c0_g2	2586	2605	2597	-29.20	-19.00	0.650684931506849	8	1-8,2605-2598;11-16,2596-2591;18-20,2589-2587	9-10,2597-2597[AILq];17-17,2590-2590[SIL];21-21,2586-2586[UP3]	.(((.((((((.-((((((((&))))))))..)))))).))).	AAGACUGACCUC-AAGCAGCA&UGUUGUUUUAAGGUCAAUCUA	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN6931_c0_g2_2597_TPlot.pdf
TRINITY_DN6931_c0_g2:2598	si_a151	TRINITY_DN6931_c0_g2	2587	2606	2598	-28.90	-19.60	0.678200692041523	7	1-9,2606-2598;12-17,2596-2591;19-21,2589-2587	10-11,2597-2597[AILq];18-18,2590-2590[SIL]	(((.((((((.-(((((((((&)))))))))..)))))).)))	AGACUGACCUC-AAGCAGCAA&UUGUUGUUUUAAGGUCAAUCU	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN6931_c0_g2_2598_TPlot.pdf
TRINITY_DN6932_c0_g1:1160	si_a315	TRINITY_DN6932_c0_g1	1148	1169	1160	-27.00	-21.20	0.785185185185185	7	2-12,1168-1158;13-19,1156-1150	1-1,1169-1169[UP5];x-x,1157-1157[BULt];20-21,1149-1148[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	UUAGAGUCAGUGGAUAAGUCCC&UGGAUUUAUCCA-UGAUUUUUU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN6932_c0_g1_1160_TPlot.pdf
TRINITY_DN6932_c0_g1:1161	si_a314	TRINITY_DN6932_c0_g1	1149	1170	1161	-27.10	-21.20	0.782287822878229	7	3-13,1168-1158;14-20,1156-1150	1-2,1170-1169[UP5];x-x,1157-1157[BULt];21-21,1149-1149[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UAGAGUCAGUGGAUAAGUCCCG&UUGGAUUUAUCCA-UGAUUUUU	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN6932_c0_g1_1161_TPlot.pdf
TRINITY_DN6932_c0_g1:1162	si_a313	TRINITY_DN6932_c0_g1	1150	1171	1162	-28.70	-21.20	0.738675958188153	8	4-14,1168-1158;15-21,1156-1150	1-3,1171-1169[UP5];x-x,1157-1157[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	AGAGUCAGUGGAUAAGUCCCGA&CUUGGAUUUAUCCA-UGAUUUU	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN6932_c0_g1_1162_TPlot.pdf
TRINITY_DN6932_c0_g1:969	si_s535	TRINITY_DN6932_c0_g1	958	978	969	-28.60	-19.40	0.678321678321678	9	2-15,977-964	1-1,978-978[UP5];16-21,963-958[UP3]	......((((((((((((((.&.))))))))))))))......	UCAUUUUCGGAUCAAAGGUGU&UCAUUUUUGAUCCGAUCAAAA	4	0.965427770052265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN6932_c0_g1_969_TPlot.pdf
TRINITY_DN6938_c0_g1:2153	si_s199	TRINITY_DN6938_c0_g1	2142	2162	2153	-31.20	-21.48	0.688461538461538	6	2-15,2161-2148;19-21,2144-2142	1-1,2162-2162[UP5];16-18,2147-2145[SIL]	(((...((((((((((((((.&.))))))))))))))...)))	ACACAGGGUACAUUCCGGAAG&AUUUUGGAAUGUACCAGUUGU	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN6938_c0_g1_2153_TPlot.pdf
TRINITY_DN6938_c0_g1:3337	si_s83	TRINITY_DN6938_c0_g1	3326	3346	3337	-30.90	-21.90	0.70873786407767	5	1-11,3346-3336;13-16,3334-3331;18-21,3329-3326	12-12,3335-3335[SIL];17-17,3330-3330[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	GGAGUGGAAAGAAGGAAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN6938_c0_g1_3337_TPlot.pdf
TRINITY_DN6938_c0_g1:3346	si_s74	TRINITY_DN6938_c0_g1	3335	3355	3346	-25.00	-18.20	0.728	5.5	2-5,3354-3351;7-20,3349-3336	1-1,3355-3355[UP5];6-6,3350-3350[SIL];21-21,3335-3335[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	AGAAGGAAAGAAGAAUAAUAU&CUAUUUUUUUUCUUUCCUUUC	4	0.999999998292486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN6938_c0_g1_3346_TPlot.pdf
TRINITY_DN6939_c0_g1:113	si_a161	TRINITY_DN6939_c0_g1	101	124	113	-35.60	-23.30	0.654494382022472	11.5	3-9,122-116;10-14,113-109;15-21,107-101	1-2,124-123[UP5];x-x,115-114[BULt];x-x,108-108[BULt]	(((((((.(((((..(((((((..&..)))))))--)))))-)))))))	AUGGGUGCAAUGGUGGUUGGCCGG&AAGGUCAAU--CUAUU-CACCCGU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a161_TRINITY_DN6939_c0_g1_113_TPlot.pdf
TRINITY_DN6948_c0_g1:1405	si_s376	TRINITY_DN6948_c0_g1	1391	1414	1405	-42.50	-28.20	0.663529411764706	12.5	3-11,1412-1404;13-13,1402-1402;14-19,1398-1393	1-2,1414-1413[UP5];12-12,1403-1403[SIL];x-x,1401-1399[BULt];20-21,1392-1391[UP3]	..((((((...(.(((((((((..&..))))))))).)---))))))..	GUGGGCGGCGUAGGCGCGGGCGUG&AUCGCUCGCGUGU---CCGCCUUA	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN6948_c0_g1_1405_TPlot.pdf
TRINITY_DN6948_c0_g1:576	si_a314	TRINITY_DN6948_c0_g1	565	585	576	-27.10	-18.90	0.697416974169742	7.5	1-4,585-582;6-20,580-566	5-5,581-581[SIL];21-21,565-565[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CGAAAUCAUGGAUGAGACUGA&UUGGAUUUAUCCAUGAUUUUU	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN6948_c0_g1_576_TPlot.pdf
TRINITY_DN6950_c0_g1:3083	si_s316	TRINITY_DN6950_c0_g1	3072	3092	3083	-31.50	-21.00	0.666666666666667	8	3-6,3090-3087;8-19,3085-3074	1-2,3092-3091[UP5];7-7,3086-3086[SIL];20-21,3073-3072[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	CAUGUAGCGAGAAGAACAGUU&UUCUGUCCUUCUUGUUACAAA	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN6950_c0_g1_3083_TPlot.pdf
TRINITY_DN6951_c0_g1:1711	si_s888	TRINITY_DN6951_c0_g1	1700	1720	1711	-26.80	-18.70	0.697761194029851	15.5	8-19,1713-1702	1-7,1720-1714[UP5];20-21,1701-1700[UP3]	..((((((((((((.......&.......))))))))))))..	GUGGGAAAGCCUAUACUAGUA&AAAAUAAAUAGGCUUUCUCUU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN6951_c0_g1_1711_TPlot.pdf
TRINITY_DN6951_c0_g1:1712	si_s887	TRINITY_DN6951_c0_g1	1701	1721	1712	-26.80	-18.70	0.697761194029851	16.5	9-20,1713-1702	1-8,1721-1714[UP5];21-21,1701-1701[UP3]	.((((((((((((........&........)))))))))))).	UGGGAAAGCCUAUACUAGUAC&AAAAAUAAAUAGGCUUUCUCU	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN6951_c0_g1_1712_TPlot.pdf
TRINITY_DN6951_c0_g1:1713	si_s886	TRINITY_DN6951_c0_g1	1702	1722	1713	-26.50	-18.30	0.690566037735849	17.5	10-21,1713-1702	1-9,1722-1714[UP5]	((((((((((((.........&.........))))))))))))	GGGAAAGCCUAUACUAGUACC&UAAAAAUAAAUAGGCUUUCUC	2	0.708340640412082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s886_TRINITY_DN6951_c0_g1_1713_TPlot.pdf
TRINITY_DN6951_c0_g1:1775	si_s678	TRINITY_DN6951_c0_g1	1764	1784	1775	-25.20	-17.50	0.694444444444444	8	1-6,1784-1779;8-16,1777-1769	7-7,1778-1778[SIL];17-21,1768-1764[UP3]	.....(((((((((.((((((&)))))).))))))))).....	GAAGCCUCAUGUUUGUAUGAU&AUUAUAGAAACAUGAGUUUAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s678_TRINITY_DN6951_c0_g1_1775_TPlot.pdf
TRINITY_DN6951_c0_g1:1776	si_s677	TRINITY_DN6951_c0_g1	1765	1785	1776	-27.10	-17.80	0.656826568265683	8	2-7,1784-1779;9-17,1777-1769	1-1,1785-1785[UP5];8-8,1778-1778[SIL];18-21,1768-1765[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	AAGCCUCAUGUUUGUAUGAUA&GAUUAUAGAAACAUGAGUUUA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s677_TRINITY_DN6951_c0_g1_1776_TPlot.pdf
TRINITY_DN6951_c0_g1:1780	si_s673	TRINITY_DN6951_c0_g1	1769	1789	1780	-26.80	-17.50	0.652985074626866	12	6-11,1784-1779;13-21,1777-1769	1-5,1789-1785[UP5];12-12,1778-1778[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	CUCAUGUUUGUAUGAUAUGUA&AAUUGAUUAUAGAAACAUGAG	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s673_TRINITY_DN6951_c0_g1_1780_TPlot.pdf
TRINITY_DN6951_c0_g1:1781	si_s441	TRINITY_DN6951_c0_g1	1771	1790	1781	-23.20	-15.70	0.676724137931034	4.5	1-14,1790-1777;16-19,1776-1773	15-15,x-x[BULq];20-21,1772-1771[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	CAUGUU-UGUAUGAUAUGUAA&UUACAUAUUAUAUAUAACAAC	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN6951_c0_g1_1781_TPlot.pdf
TRINITY_DN6951_c0_g1:1782	si_s440	TRINITY_DN6951_c0_g1	1772	1791	1782	-21.60	-17.00	0.787037037037037	3.5	1-15,1791-1777;17-20,1776-1773	16-16,x-x[BULq];21-21,1772-1772[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	AUGUU-UGUAUGAUAUGUAAU&AUUACAUAUUAUAUAUAACAA	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN6951_c0_g1_1782_TPlot.pdf
TRINITY_DN6951_c0_g1:1783	si_s439	TRINITY_DN6951_c0_g1	1773	1792	1783	-21.50	-17.00	0.790697674418605	3.5	2-16,1791-1777;18-21,1776-1773	1-1,1792-1792[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	UGUU-UGUAUGAUAUGUAAUA&AAUUACAUAUUAUAUAUAACA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN6951_c0_g1_1783_TPlot.pdf
TRINITY_DN6951_c0_g1:1785	si_s437	TRINITY_DN6951_c0_g1	1774	1794	1785	-19.70	-14.90	0.756345177664975	9	4-18,1791-1777	1-3,1794-1792[UP5];19-21,1776-1774[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUUUGUAUGAUAUGUAAUAAG&AUAAUUACAUAUUAUAUAUAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN6951_c0_g1_1785_TPlot.pdf
TRINITY_DN6951_c0_g1:1786	si_s436	TRINITY_DN6951_c0_g1	1775	1795	1786	-19.60	-14.90	0.760204081632653	10	5-19,1791-1777	1-4,1795-1792[UP5];20-21,1776-1775[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUUGUAUGAUAUGUAAUAAGG&AAUAAUUACAUAUUAUAUAUA	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN6951_c0_g1_1786_TPlot.pdf
TRINITY_DN6951_c0_g1:1788	si_s434	TRINITY_DN6951_c0_g1	1777	1797	1788	-21.50	-14.80	0.688372093023256	12	7-21,1791-1777	1-6,1797-1792[UP5]	(((((((((((((((......&......)))))))))))))))	UGUAUGAUAUGUAAUAAGGCA&ACAAUAAUUACAUAUUAUAUA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN6951_c0_g1_1788_TPlot.pdf
TRINITY_DN69529_c0_g1:152	si_a623	TRINITY_DN69529_c0_g1	141	162	152	-33.10	-22.10	0.667673716012085	14	1-9,162-154;14-19,148-143	10-13,153-149[AILt];20-21,142-141[UP3]	..((((((.....(((((((((&)))))))))-....))))))..	ACUCGGCGGACGCGCGCCUGGU&ACUAGGCGU-AUUAUGUCGAUU	0	0.0634373966598067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN69529_c0_g1_152_TPlot.pdf
TRINITY_DN6954_c0_g3:216	si_a194	TRINITY_DN6954_c0_g3	205	225	216	-29.40	-19.90	0.67687074829932	10	1-9,225-217;11-14,215-212	10-10,216-216[SIL];15-21,211-205[UP3]	.......((((.(((((((((&))))))))).)))).......	GAGAAAAAGUGUGCAGGGAAA&UUUCCCUGUUCACUAAUAAAU	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN6954_c0_g3_216_TPlot.pdf
TRINITY_DN6954_c0_g3:217	si_a193	TRINITY_DN6954_c0_g3	206	226	217	-30.90	-20.10	0.650485436893204	10	2-10,225-217;12-15,215-212	1-1,226-226[UP5];11-11,216-216[SIL];16-21,211-206[UP3]	......((((.(((((((((.&.))))))))).))))......	AGAAAAAGUGUGCAGGGAAAA&CUUUCCCUGUUCACUAAUAAA	3	0.999938520664513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN6954_c0_g3_217_TPlot.pdf
TRINITY_DN6954_c0_g3:59	si_s76	TRINITY_DN6954_c0_g3	48	68	59	-23.60	-15.50	0.656779661016949	7	3-14,66-55;16-21,53-48	1-2,68-67[UP5];15-15,54-54[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GGGAAAUGAGAGAAAAAAGUA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6954_c0_g3_59_TPlot.pdf
TRINITY_DN6957_c0_g1:1957	si_s10	TRINITY_DN6957_c0_g1	1946	1966	1957	-23.80	-17.20	0.722689075630252	5.5	1-10,1966-1957;12-19,1955-1948	11-11,1956-1956[SIL];20-21,1947-1946[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	CAAAUGUAGUUAUGAUAAGUA&UACUUAUUAUUACUAUAUUGA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN6957_c0_g1_1957_TPlot.pdf
TRINITY_DN6957_c0_g1:1958	si_s9	TRINITY_DN6957_c0_g1	1947	1967	1958	-22.90	-17.40	0.759825327510917	5.5	2-11,1966-1957;13-20,1955-1948	1-1,1967-1967[UP5];12-12,1956-1956[SIL];21-21,1947-1947[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	AAAUGUAGUUAUGAUAAGUAU&UUACUUAUUAUUACUAUAUUG	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN6957_c0_g1_1958_TPlot.pdf
TRINITY_DN6957_c0_g1:1959	si_s8	TRINITY_DN6957_c0_g1	1948	1968	1959	-21.30	-17.00	0.7981220657277	5.5	3-12,1966-1957;14-21,1955-1948	1-2,1968-1967[UP5];13-13,1956-1956[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AAUGUAGUUAUGAUAAGUAUC&AUUACUUAUUAUUACUAUAUU	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN6957_c0_g1_1959_TPlot.pdf
TRINITY_DN6957_c0_g1:1960	si_s7	TRINITY_DN6957_c0_g1	1949	1969	1960	-21.70	-16.10	0.741935483870968	7.5	4-13,1966-1957;15-21,1955-1949	1-3,1969-1967[UP5];14-14,1956-1956[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	AUGUAGUUAUGAUAAGUAUCU&UAUUACUUAUUAUUACUAUAU	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN6957_c0_g1_1960_TPlot.pdf
TRINITY_DN6957_c0_g1:1961	si_s6	TRINITY_DN6957_c0_g1	1950	1970	1961	-21.70	-14.90	0.686635944700461	9.5	5-14,1966-1957;16-21,1955-1950	1-4,1970-1967[UP5];15-15,1956-1956[SIL]	((((((.((((((((((....&....)))))))))).))))))	UGUAGUUAUGAUAAGUAUCUG&AUAUUACUUAUUAUUACUAUA	3	0.999859008526984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN6957_c0_g1_1961_TPlot.pdf
TRINITY_DN6957_c0_g1:403	si_s290	TRINITY_DN6957_c0_g1	391	412	403	-38.10	-24.90	0.653543307086614	7.5	1-4,412-409;7-12,406-401;13-21,399-391	5-6,408-407[SIL];x-x,400-400[BULt]	(((((((((.((((((..((((&))))..))))))-)))))))))	GCAGUUUUAUAUCGACAUGGCG&CGCCUAGUCGAU-UGGAAUUGC	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s290_TRINITY_DN6957_c0_g1_403_TPlot.pdf
TRINITY_DN6959_c1_g1:117	si_a609	TRINITY_DN6959_c1_g1	104	126	117	-38.10	-25.02	0.656692913385827	8	1-10,126-117;12-16,116-112;19-21,106-104	11-11,x-x[BULq];17-18,111-107[AILt]	(((.....(((((-((((((((((&)))))))))).)))))---..)))	GCCAUCGCGUCGA-UGGGAUUGCG&CGCAAUUCCAAUCGAC---UAGGC	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a609_TRINITY_DN6959_c1_g1_117_TPlot.pdf
TRINITY_DN6959_c1_g1:120	si_a606	TRINITY_DN6959_c1_g1	110	129	120	-32.60	-22.60	0.693251533742331	9	4-13,126-117;15-19,116-112	1-3,129-127[UP5];14-14,x-x[BULq];20-21,111-110[UP3]	..(((((-((((((((((...&...)))))))))).)))))..	GCGUCGA-UGGGAUUGCGCGC&UUUCGCAAUUCCAAUCGACUA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a606_TRINITY_DN6959_c1_g1_120_TPlot.pdf
TRINITY_DN6959_c1_g1:121	si_a605	TRINITY_DN6959_c1_g1	111	130	121	-32.20	-22.60	0.701863354037267	10	5-14,126-117;16-20,116-112	1-4,130-127[UP5];15-15,x-x[BULq];21-21,111-111[UP3]	.(((((-((((((((((....&....)))))))))).))))).	CGUCGA-UGGGAUUGCGCGCC&UUUUCGCAAUUCCAAUCGACU	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN6959_c1_g1_121_TPlot.pdf
TRINITY_DN6959_c1_g1:122	si_a604	TRINITY_DN6959_c1_g1	112	131	122	-31.60	-22.30	0.705696202531646	11	6-15,126-117;17-21,116-112	1-5,131-127[UP5];16-16,x-x[BULq]	(((((-((((((((((.....&.....)))))))))).)))))	GUCGA-UGGGAUUGCGCGCCA&AUUUUCGCAAUUCCAAUCGAC	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN6959_c1_g1_122_TPlot.pdf
TRINITY_DN6959_c1_g1:207	si_a595	TRINITY_DN6959_c1_g1	195	216	207	-30.30	-19.92	0.657425742574257	10.5	2-11,215-206;15-20,201-196	1-1,216-216[UP5];12-14,205-202[AILt];21-21,195-195[UP3]	.((((((....((((((((((.&.))))))))))-...)))))).	UGUUGCGUAUUGUUCUGUUCUC&AAGGACAGAAU-UUUCGCAAUU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN6959_c1_g1_207_TPlot.pdf
TRINITY_DN6959_c1_g1:288	si_a335	TRINITY_DN6959_c1_g1	277	297	288	-31.10	-20.90	0.672025723472669	12.5	5-15,293-283;17-21,281-277	1-4,297-294[UP5];16-16,282-282[SIL]	(((((.(((((((((((....&....))))))))))).)))))	UGUUUGCGGGGCGGGGGUUUU&UUAUUCCUUGUCCCGAAAAUA	2	0.95018912118493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN6959_c1_g1_288_TPlot.pdf
TRINITY_DN6959_c1_g1:38	si_a397	TRINITY_DN6959_c1_g1	27	47	38	-24.00	-15.80	0.658333333333333	5	1-12,47-36;15-21,33-27	13-14,35-34[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GAAUAAAUAAAUUUUGUAUUC&GAAUAUAGAAUUGUUUUGUUU	4	0.999995070517503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN6959_c1_g1_38_TPlot.pdf
TRINITY_DN695_c0_g1:1430	si_a556	TRINITY_DN695_c0_g1	1415	1439	1430	-33.40	-23.50	0.703592814371258	10	3-15,1437-1425;16-19,1420-1417	1-2,1439-1438[UP5];x-x,1424-1421[BULt];20-21,1416-1415[UP3]	..((((....(((((((((((((..&..)))))))))))))----))))..	AACACGAAUUGGGAGAUGAAGAACA&AUUUCUUUAUCUCCC----CGUGAA	4	0.935779560774216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN695_c0_g1_1430_TPlot.pdf
TRINITY_DN695_c0_g1:1434	si_a76	TRINITY_DN695_c0_g1	1423	1443	1434	-21.20	-13.80	0.650943396226415	10.5	3-15,1441-1429	1-2,1443-1442[UP5];16-21,1428-1423[UP3]	......(((((((((((((..&..)))))))))))))......	UUGGGAGAUGAAGAACAAUAA&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN695_c0_g1_1434_TPlot.pdf
TRINITY_DN695_c0_g1:1716	si_a78	TRINITY_DN695_c0_g1	1705	1725	1716	-22.30	-15.60	0.699551569506726	5.5	1-9,1725-1717;11-21,1715-1705	10-10,1716-1716[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	UUCUUGAUAAUUGAAAAUAGU&AUUGUUUUUCAUUAUUAAGAA	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN695_c0_g1_1716_TPlot.pdf
TRINITY_DN695_c0_g1:1851	si_s485	TRINITY_DN695_c0_g1	1840	1860	1851	-18.10	-12.80	0.707182320441989	4.5	2-10,1859-1851;12-20,1849-1841	1-1,1860-1860[UP5];11-11,1850-1850[SIL];21-21,1840-1840[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AUUGUAUUUAUAUAAAUAUAU&CUAUAUUUAUUUAAAUAUAAA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN695_c0_g1_1851_TPlot.pdf
TRINITY_DN695_c0_g1:2141	si_s489	TRINITY_DN695_c0_g1	2130	2150	2141	-17.90	-11.70	0.653631284916201	9.5	2-17,2149-2134	1-1,2150-2150[UP5];18-21,2133-2130[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUUAUUUGUGUUUAGGUGAAG&AUUUAUUUAAAUAUAAACAAA	3	0.999983171161332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN695_c0_g1_2141_TPlot.pdf
TRINITY_DN695_c0_g1:2257	si_a453	TRINITY_DN695_c0_g1	2245	2266	2257	-21.10	-14.60	0.691943127962085	8.5	1-11,2266-2256;12-17,2254-2249	x-x,2255-2255[BULt];18-21,2248-2245[UP3]	....((((((.(((((((((((&)))))))))))-))))))....	UUUUUGUAUGCACAACAAUUGU&AUAAUUGUUGU-UAUAUAUAAU	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN695_c0_g1_2257_TPlot.pdf
TRINITY_DN695_c0_g1:2258	si_a452	TRINITY_DN695_c0_g1	2246	2267	2258	-23.00	-15.00	0.652173913043478	8	2-12,2266-2256;13-18,2254-2249	1-1,2267-2267[UP5];x-x,2255-2255[BULt];19-21,2248-2246[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	UUUUGUAUGCACAACAAUUGUG&GAUAAUUGUUGU-UAUAUAUAA	4	0.999999129531883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN695_c0_g1_2258_TPlot.pdf
TRINITY_DN6960_c0_g1:981	si_a71	TRINITY_DN6960_c0_g1	968	990	981	-23.30	-16.98	0.728755364806867	8	1-14,990-977;17-20,972-969	15-16,976-973[AILt];21-21,968-968[UP3]	.((((....((((((((((((((&))))))))))))))--..)))).	AGAUGUUGUAGACGAUUUGAAGG&CUUUCAAAUUGUUU--UUCAUUA	4	0.999286599810513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN6960_c0_g1_981_TPlot.pdf
TRINITY_DN6960_c0_g1:982	si_a70	TRINITY_DN6960_c0_g1	969	991	982	-23.90	-18.08	0.756485355648536	7	1-15,991-977;18-21,972-969	16-17,976-973[AILt]	((((....(((((((((((((((&)))))))))))))))--..))))	GAUGUUGUAGACGAUUUGAAGGA&UCUUUCAAAUUGUUU--UUCAUU	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN6960_c0_g1_982_TPlot.pdf
TRINITY_DN6961_c0_g1:4048	si_s403	TRINITY_DN6961_c0_g1	4035	4057	4048	-32.00	-20.80	0.65	7	2-14,4056-4044;15-19,4041-4037	1-1,4057-4057[UP5];x-x,4043-4042[BULt];20-21,4036-4035[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	AGGUCGUGCUUUUCGUUUUCUUA&AAGGAAGACGAAAA--ACGACAU	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s403_TRINITY_DN6961_c0_g1_4048_TPlot.pdf
TRINITY_DN6962_c0_g1:1800	si_a16	TRINITY_DN6962_c0_g1	1789	1809	1800	-26.30	-17.48	0.664638783269962	10.5	1-1,1809-1809;4-11,1806-1799;15-21,1795-1789	2-3,1808-1807[SIL];12-14,1798-1796[SIL]	(((((((...((((((((..(&)..))))))))...)))))))	GCUGAGACAUGAUAGGCUGGC&GAAAGCCUAUUUAUUUUUAGU	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN6962_c0_g1_1800_TPlot.pdf
TRINITY_DN6962_c0_g1:3626	si_s81	TRINITY_DN6962_c0_g1	3615	3635	3626	-28.90	-20.70	0.716262975778547	6.5	1-16,3635-3620;19-20,3617-3616	17-18,3619-3618[SIL];21-21,3615-3615[UP3]	.((..((((((((((((((((&))))))))))))))))..)).	UGAUCAAGGAGGGGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN6962_c0_g1_3626_TPlot.pdf
TRINITY_DN6962_c0_g1:3628	si_s79	TRINITY_DN6962_c0_g1	3617	3637	3628	-26.20	-19.00	0.725190839694656	9	3-18,3635-3620	1-2,3637-3636[UP5];19-21,3619-3617[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUCAAGGAGGGGAAGAAGACC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6962_c0_g1_3628_TPlot.pdf
TRINITY_DN6962_c0_g1:3631	si_s76	TRINITY_DN6962_c0_g1	3620	3640	3631	-23.60	-19.00	0.805084745762712	11.5	6-21,3635-3620	1-5,3640-3636[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAGGGGAAGAAGACCAAG&AUUUUUUUUCUUUCCUUUCUU	3	0.999998359419766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6962_c0_g1_3631_TPlot.pdf
TRINITY_DN6962_c0_g1:3632	si_s75	TRINITY_DN6962_c0_g1	3621	3641	3632	-24.00	-18.20	0.758333333333333	13.5	7-21,3635-3621	1-6,3641-3636[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAGGGGAAGAAGACCAAGG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999998980839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6962_c0_g1_3632_TPlot.pdf
TRINITY_DN6962_c0_g1:3730	si_s91	TRINITY_DN6962_c0_g1	3714	3739	3730	-34.70	-22.90	0.659942363112392	15	1-10,3739-3730;11-16,3724-3719;18-20,3717-3715	x-x,3729-3725[BULt];17-17,3718-3718[SIL];21-21,3714-3714[UP3]	.(((.((((((.....((((((((((&))))))))))-----)))))).))).	GCCGUGGCGAGAAGUCGAAGAAGGAG&UUUCUUCUUC-----UUCGCUUCGGA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6962_c0_g1_3730_TPlot.pdf
TRINITY_DN6963_c0_g1:3648	si_a785	TRINITY_DN6963_c0_g1	3637	3657	3648	-25.90	-17.88	0.69034749034749	11.5	1-7,3657-3651;11-21,3647-3637	8-10,3650-3648[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	GAGGGUGGGGACGAGGAGGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.999999999994308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN6963_c0_g1_3648_TPlot.pdf
TRINITY_DN6963_c0_g1:3679	si_a21	TRINITY_DN6963_c0_g1	3667	3688	3679	-24.30	-15.80	0.650205761316872	8.5	2-13,3687-3676;14-18,3674-3670	1-1,3688-3688[UP5];x-x,3675-3675[BULt];19-21,3669-3667[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	GAUGAACUGGAAGAUGAGUAGU&CCUAUUUAUUUUU-AGUUCUAA	3	0.999999998510517	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN6963_c0_g1_3679_TPlot.pdf
TRINITY_DN6963_c0_g1:4497	si_a630	TRINITY_DN6963_c0_g1	4486	4505	4497	-25.80	-16.80	0.651162790697674	8	1-5,4505-4501;7-8,4500-4499;10-20,4497-4487	6-6,x-x[BULq];9-9,4498-4498[SIL];21-21,4486-4486[UP3]	.(((((((((((.((-(((((&))))).)).))))))))))).	GCGAGAAAAUCGUCG-AGUAC&GUAUUAUGUCGAUUUUUUUGA	4	0.99999999689297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN6963_c0_g1_4497_TPlot.pdf
TRINITY_DN6963_c0_g1:4957	si_a497	TRINITY_DN6963_c0_g1	4946	4966	4957	-32.00	-21.00	0.65625	8.5	2-9,4965-4958;11-12,4956-4955;14-16,4953-4951;18-21,4949-4946	1-1,4966-4966[UP5];10-10,4957-4957[SIL];13-13,4954-4954[SIL];17-17,4950-4950[SIL]	((((.(((.((.((((((((.&.)))))))).)).))).))))	GAGGCAGAGGAUGGGCGACAA&AUGUCGUUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN6963_c0_g1_4957_TPlot.pdf
TRINITY_DN6963_c0_g1:5007	si_a789	TRINITY_DN6963_c0_g1	4994	5016	5007	-24.80	-16.50	0.665322580645161	12	2-11,5015-5006;12-18,5003-4997	1-1,5016-5016[UP5];x-x,5005-5004[BULt];19-21,4996-4994[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	GCGGGAGAGUGCGGAGAAGUAGU&UCUAUUUUUCU--AUUUUCCAAU	3	0.999999999985845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN6963_c0_g1_5007_TPlot.pdf
TRINITY_DN6963_c0_g1:5029	si_s219	TRINITY_DN6963_c0_g1	5018	5038	5029	-33.80	-23.60	0.698224852071006	7.5	1-11,5038-5028;13-17,5026-5022	12-12,5027-5027[SIL];18-21,5021-5018[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UUUGUCAUGGGGUUUUGAACA&UGUUCGAAACCGCGUGAAUAA	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN6963_c0_g1_5029_TPlot.pdf
TRINITY_DN6963_c0_g1:5031	si_s217	TRINITY_DN6963_c0_g1	5020	5040	5031	-35.80	-23.60	0.659217877094972	7.5	3-13,5038-5028;15-19,5026-5022	1-2,5040-5039[UP5];14-14,5027-5027[SIL];20-21,5021-5020[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	UGUCAUGGGGUUUUGAACAAA&UGUGUUCGAAACCGCGUGAAU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN6963_c0_g1_5031_TPlot.pdf
TRINITY_DN6963_c0_g1:5032	si_s216	TRINITY_DN6963_c0_g1	5021	5041	5032	-35.80	-23.60	0.659217877094972	8.5	4-14,5038-5028;16-20,5026-5022	1-3,5041-5039[UP5];15-15,5027-5027[SIL];21-21,5021-5021[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	GUCAUGGGGUUUUGAACAAAA&UUGUGUUCGAAACCGCGUGAA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN6963_c0_g1_5032_TPlot.pdf
TRINITY_DN6963_c0_g1:5053	si_s76	TRINITY_DN6963_c0_g1	5042	5062	5053	-23.60	-16.10	0.682203389830509	17.5	9-21,5054-5042	1-8,5062-5055[UP5]	(((((((((((((........&........)))))))))))))	AAGGGGGGAGAGAUGGCGUCC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6963_c0_g1_5053_TPlot.pdf
TRINITY_DN6963_c0_g1:5070	si_s814	TRINITY_DN6963_c0_g1	5059	5079	5070	-26.60	-17.90	0.672932330827068	11	1-13,5079-5067	14-21,5066-5059[UP3]	........(((((((((((((&)))))))))))))........	GUCCGCUGAGGAGAAGGUGAC&GUUACCUUUUCUUAAUAAUGA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN6963_c0_g1_5070_TPlot.pdf
TRINITY_DN6963_c0_g1:5072	si_s812	TRINITY_DN6963_c0_g1	5061	5081	5072	-26.40	-21.60	0.818181818181818	8.5	1-15,5081-5067	16-21,5066-5061[UP3]	......(((((((((((((((&)))))))))))))))......	CCGCUGAGGAGAAGGUGACGA&UCGUUACCUUUUCUUAAUAAU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN6963_c0_g1_5072_TPlot.pdf
TRINITY_DN6963_c0_g1:5073	si_s811	TRINITY_DN6963_c0_g1	5062	5082	5073	-26.40	-21.80	0.825757575757576	8.5	2-16,5081-5067	1-1,5082-5082[UP5];17-21,5066-5062[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CGCUGAGGAGAAGGUGACGAG&UUCGUUACCUUUUCUUAAUAA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN6963_c0_g1_5073_TPlot.pdf
TRINITY_DN6963_c0_g1:5074	si_s810	TRINITY_DN6963_c0_g1	5063	5083	5074	-27.90	-22.40	0.802867383512545	8	2-17,5082-5067	1-1,5083-5083[UP5];18-21,5066-5063[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCUGAGGAGAAGGUGACGAGA&CUUCGUUACCUUUUCUUAAUA	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN6963_c0_g1_5074_TPlot.pdf
TRINITY_DN6963_c0_g1:5075	si_s809	TRINITY_DN6963_c0_g1	5064	5084	5075	-28.50	-22.40	0.785964912280702	9	3-18,5082-5067	1-2,5084-5083[UP5];19-21,5066-5064[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUGAGGAGAAGGUGACGAGAA&UCUUCGUUACCUUUUCUUAAU	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN6963_c0_g1_5075_TPlot.pdf
TRINITY_DN6963_c0_g1:5076	si_s808	TRINITY_DN6963_c0_g1	5065	5085	5076	-28.60	-22.40	0.783216783216783	10	4-19,5082-5067	1-3,5085-5083[UP5];20-21,5066-5065[UP3]	..((((((((((((((((...&...))))))))))))))))..	UGAGGAGAAGGUGACGAGAAG&AUCUUCGUUACCUUUUCUUAA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN6963_c0_g1_5076_TPlot.pdf
TRINITY_DN6963_c0_g1:5077	si_s807	TRINITY_DN6963_c0_g1	5066	5086	5077	-28.90	-22.40	0.775086505190311	11	5-20,5082-5067	1-4,5086-5083[UP5];21-21,5066-5066[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAGGAGAAGGUGACGAGAAGG&UAUCUUCGUUACCUUUUCUUA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN6963_c0_g1_5077_TPlot.pdf
TRINITY_DN6963_c0_g1:5078	si_s806	TRINITY_DN6963_c0_g1	5067	5087	5078	-28.60	-22.00	0.769230769230769	12	6-21,5082-5067	1-5,5087-5083[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGGAGAAGGUGACGAGAAGGA&UUAUCUUCGUUACCUUUUCUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6963_c0_g1_5078_TPlot.pdf
TRINITY_DN6963_c0_g1:5084	si_s315	TRINITY_DN6963_c0_g1	5073	5096	5084	-31.60	-21.40	0.677215189873418	14	3-6,5094-5091;7-19,5087-5075	1-2,5096-5095[UP5];x-x,5090-5088[BULt];20-21,5074-5073[UP3]	..(((((((((((((...((((..&..))))---)))))))))))))..	AGGUGACGAGAAGGAAGCCGGGCA&AUUCUG---UCCUUCUUGUUACAA	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN6963_c0_g1_5084_TPlot.pdf
TRINITY_DN6963_c0_g1:5085	si_s314	TRINITY_DN6963_c0_g1	5074	5097	5085	-31.50	-21.40	0.679365079365079	15	4-7,5094-5091;8-20,5087-5075	1-3,5097-5095[UP5];x-x,5090-5088[BULt];21-21,5074-5074[UP3]	.(((((((((((((...((((...&...))))---))))))))))))).	GGUGACGAGAAGGAAGCCGGGCAA&AAUUCUG---UCCUUCUUGUUACA	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN6963_c0_g1_5085_TPlot.pdf
TRINITY_DN6963_c0_g1:5086	si_s313	TRINITY_DN6963_c0_g1	5075	5098	5086	-30.80	-21.00	0.681818181818182	16	5-8,5094-5091;9-21,5087-5075	1-4,5098-5095[UP5];x-x,5090-5088[BULt]	(((((((((((((...((((....&....))))---)))))))))))))	GUGACGAGAAGGAAGCCGGGCAAG&AAAUUCUG---UCCUUCUUGUUAC	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN6963_c0_g1_5086_TPlot.pdf
TRINITY_DN6965_c0_g1:1245	si_a541	TRINITY_DN6965_c0_g1	1234	1254	1245	-32.20	-21.20	0.658385093167702	5.5	2-12,1253-1243;15-20,1240-1235	1-1,1254-1254[UP5];13-14,1242-1241[SIL];21-21,1234-1234[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	UGAAGUAUUUUGAAUCGAUCA&CGAUCGGUUCAAUCUAUUUCU	2	0.818249859602803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a541_TRINITY_DN6965_c0_g1_1245_TPlot.pdf
TRINITY_DN6965_c0_g1:1256	si_a762	TRINITY_DN6965_c0_g1	1245	1266	1256	-29.70	-20.30	0.683501683501683	9.5	3-6,1264-1261;7-9,1259-1257;11-21,1255-1245	1-2,1266-1265[UP5];x-x,1260-1260[BULt];10-10,1256-1256[SIL]	(((((((((((.(((.((((..&..))))-))).)))))))))))	GAAUCGAUCAAUGACUCCGACU&CUUUGG-GUUUUUGAUUGAUUC	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN6965_c0_g1_1256_TPlot.pdf
TRINITY_DN6965_c0_g1:2267	si_a770	TRINITY_DN6965_c0_g1	2256	2276	2267	-28.70	-20.90	0.728222996515679	6	2-8,2275-2269;10-13,2267-2264;16-21,2261-2256	1-1,2276-2276[UP5];9-9,2268-2268[SIL];14-15,2263-2262[SIL]	((((((..((((.(((((((.&.))))))).))))..))))))	GAAGAGGAGAAUGAAUCAGAU&UUUUGAUUGAUUCAACUCUUC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN6965_c0_g1_2267_TPlot.pdf
TRINITY_DN6965_c0_g1:767	si_a405	TRINITY_DN6965_c0_g1	756	776	767	-19.80	-13.10	0.661616161616162	9	1-15,776-762	16-21,761-756[UP3]	......(((((((((((((((&)))))))))))))))......	GCAUUCAUAGAUAAAGCAAUU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN6965_c0_g1_767_TPlot.pdf
TRINITY_DN6966_c0_g1:1222	si_s507	TRINITY_DN6966_c0_g1	1211	1231	1222	-22.70	-15.60	0.687224669603524	8.5	4-15,1228-1217;17-19,1215-1213	1-3,1231-1229[UP5];16-16,1216-1216[SIL];20-21,1212-1211[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	AAGAGCAUAUAGAAUUGUAAU&AAAACAAUUCUAUAUUCUUAA	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN6966_c0_g1_1222_TPlot.pdf
TRINITY_DN69671_c0_g1:275	si_a625	TRINITY_DN69671_c0_g1	264	284	275	-30.60	-20.80	0.679738562091503	10.5	3-15,282-270	1-2,284-283[UP5];16-21,269-264[UP3]	......(((((((((((((..&..)))))))))))))......	GUUACGGAUAUAGUACGCCAU&UAGGCGUAUUAUGUCGAUUUU	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN69671_c0_g1_275_TPlot.pdf
TRINITY_DN69671_c0_g1:283	si_a617	TRINITY_DN69671_c0_g1	272	292	283	-34.00	-22.10	0.65	7	2-8,291-285;11-21,282-272	1-1,292-292[UP5];9-10,284-283[SIL]	(((((((((((..(((((((.&.)))))))..)))))))))))	UAUAGUACGCCAUGUUGAUUU&CAAUCGACUAGGCGUAUUAUG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a617_TRINITY_DN69671_c0_g1_283_TPlot.pdf
TRINITY_DN69671_c0_g1:347	si_s80	TRINITY_DN69671_c0_g1	336	356	347	-28.20	-19.10	0.677304964539007	8	1-15,356-342	16-21,341-336[UP3]	......(((((((((((((((&)))))))))))))))......	GUAUAUGAAGGGAAAGAAAGA&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN69671_c0_g1_347_TPlot.pdf
TRINITY_DN69671_c0_g1:348	si_s79	TRINITY_DN69671_c0_g1	337	357	348	-26.20	-19.50	0.744274809160305	7	1-16,357-342	17-21,341-337[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUAUGAAGGGAAAGAAAGAG&UUUUUUCUUUCCUUUCUUCUU	2	0.999999971185227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN69671_c0_g1_348_TPlot.pdf
TRINITY_DN69671_c0_g1:349	si_s78	TRINITY_DN69671_c0_g1	338	358	349	-26.20	-19.60	0.748091603053435	7.5	2-17,357-342	1-1,358-358[UP5];18-21,341-338[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUAUGAAGGGAAAGAAAGAGC&UUUUUUUCUUUCCUUUCUUCU	2	0.999999922974697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN69671_c0_g1_349_TPlot.pdf
TRINITY_DN69671_c0_g1:350	si_s77	TRINITY_DN69671_c0_g1	339	359	350	-25.50	-19.60	0.768627450980392	8.5	3-18,357-342	1-2,359-358[UP5];19-21,341-339[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAUGAAGGGAAAGAAAGAGCU&UUUUUUUUCUUUCCUUUCUUC	3	0.999999997674827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN69671_c0_g1_350_TPlot.pdf
TRINITY_DN69671_c0_g1:352	si_s75	TRINITY_DN69671_c0_g1	341	361	352	-24.00	-19.60	0.816666666666667	10.5	5-20,357-342	1-4,361-358[UP5];21-21,341-341[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGAAGGGAAAGAAAGAGCUCU&UAUUUUUUUUCUUUCCUUUCU	3	0.99874481731336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN69671_c0_g1_352_TPlot.pdf
TRINITY_DN69671_c0_g1:353	si_s74	TRINITY_DN69671_c0_g1	342	362	353	-25.00	-19.20	0.768	11.5	6-21,357-342	1-5,362-358[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGGGAAAGAAAGAGCUCUU&CUAUUUUUUUUCUUUCCUUUC	3	0.999943302752433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN69671_c0_g1_353_TPlot.pdf
TRINITY_DN69671_c0_g1:354	si_s73	TRINITY_DN69671_c0_g1	343	365	354	-24.00	-17.68	0.736666666666667	11.5	1-4,365-362;7-21,357-343	5-6,361-358[AILt]	(((((((((((((((....((((&))))--..)))))))))))))))	AAGGGAAAGAAAGAGCUCUUGGA&UCUA--UUUUUUUUCUUUCCUUU	3	0.999999999978779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN69671_c0_g1_354_TPlot.pdf
TRINITY_DN69671_c0_g1:355	si_s72	TRINITY_DN69671_c0_g1	344	366	355	-24.10	-17.18	0.712863070539419	12	1-5,366-362;8-21,357-344	6-7,361-358[AILt]	((((((((((((((....(((((&)))))--..))))))))))))))	AGGGAAAGAAAGAGCUCUUGGAG&UUCUA--UUUUUUUUCUUUCCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN69671_c0_g1_355_TPlot.pdf
TRINITY_DN69671_c0_g1:357	si_s70	TRINITY_DN69671_c0_g1	346	367	357	-25.80	-17.20	0.666666666666667	13	1-5,367-363;10-21,357-346	6-9,362-358[AILt]	((((((((((((.....(((((&)))))-....))))))))))))	GGAAAGAAAGAGCUCUUGGAGU&ACUUC-UAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN69671_c0_g1_357_TPlot.pdf
TRINITY_DN6967_c0_g1:1030	si_s94	TRINITY_DN6967_c0_g1	1019	1038	1030	-35.50	-24.30	0.684507042253521	6.5	1-8,1038-1031;10-17,1030-1023	9-9,x-x[BULq];18-21,1022-1019[UP3]	....((((((((-((((((((&)))))))).))))))))....	UAGACUGAAGCG-AGAAGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN6967_c0_g1_1030_TPlot.pdf
TRINITY_DN6967_c0_g1:1032	si_s91	TRINITY_DN6967_c0_g1	1022	1041	1032	-34.70	-27.70	0.798270893371758	3.5	1-11,1041-1031;13-20,1030-1023	12-12,x-x[BULq];21-21,1022-1022[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	ACUGAAGCG-AGAAGAAGAAA&UUUCUUCUUCUUCGCUUCGGA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6967_c0_g1_1032_TPlot.pdf
TRINITY_DN6967_c0_g1:1033	si_s90	TRINITY_DN6967_c0_g1	1023	1042	1033	-35.30	-30.20	0.855524079320113	1.5	1-12,1042-1031;14-21,1030-1023	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	CUGAAGCG-AGAAGAAGAAAG&CUUUCUUCUUCUUCGCUUCGG	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN6967_c0_g1_1033_TPlot.pdf
TRINITY_DN6967_c0_g1:1034	si_s89	TRINITY_DN6967_c0_g1	1024	1043	1034	-35.30	-27.50	0.779036827195468	2.5	2-13,1042-1031;15-21,1030-1024	1-1,1043-1043[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	UGAAGCG-AGAAGAAGAAAGU&CCUUUCUUCUUCUUCGCUUCG	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN6967_c0_g1_1034_TPlot.pdf
TRINITY_DN6967_c0_g1:1035	si_s88	TRINITY_DN6967_c0_g1	1025	1044	1035	-34.80	-26.70	0.767241379310345	4	3-14,1042-1031;16-21,1030-1025	1-2,1044-1043[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	GAAGCG-AGAAGAAGAAAGUU&UCCUUUCUUCUUCUUCGCUUC	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN6967_c0_g1_1035_TPlot.pdf
TRINITY_DN6967_c0_g1:1036	si_s87	TRINITY_DN6967_c0_g1	1026	1045	1036	-32.90	-23.70	0.720364741641337	6	4-15,1042-1031;17-21,1030-1026	1-3,1045-1043[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	AAGCG-AGAAGAAGAAAGUUU&UUCCUUUCUUCUUCUUCGCUU	3	0.999999765044861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN6967_c0_g1_1036_TPlot.pdf
TRINITY_DN6967_c0_g1:1281	si_s79	TRINITY_DN6967_c0_g1	1269	1290	1281	-26.20	-17.10	0.652671755725191	7.5	1-10,1290-1281;11-18,1279-1272	x-x,1280-1280[BULt];19-21,1271-1269[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UUCAGGGAAGGCAAAGAGAAAG&UUUUUUCUUU-CCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN6967_c0_g1_1281_TPlot.pdf
TRINITY_DN6967_c0_g1:1282	si_s78	TRINITY_DN6967_c0_g1	1270	1291	1282	-26.20	-17.10	0.652671755725191	8	2-11,1290-1281;12-19,1279-1272	1-1,1291-1291[UP5];x-x,1280-1280[BULt];20-21,1271-1270[UP3]	..((((((((.((((((((((.&.))))))))))-))))))))..	UCAGGGAAGGCAAAGAGAAAGU&UUUUUUUCUUU-CCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN6967_c0_g1_1282_TPlot.pdf
TRINITY_DN6967_c0_g1:1283	si_s77	TRINITY_DN6967_c0_g1	1271	1292	1283	-25.50	-17.10	0.670588235294118	9	3-12,1290-1281;13-20,1279-1272	1-2,1292-1291[UP5];x-x,1280-1280[BULt];21-21,1271-1271[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	CAGGGAAGGCAAAGAGAAAGUA&UUUUUUUUCUUU-CCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN6967_c0_g1_1283_TPlot.pdf
TRINITY_DN6967_c0_g1:1284	si_s76	TRINITY_DN6967_c0_g1	1272	1293	1284	-23.60	-17.10	0.724576271186441	9	4-13,1290-1281;14-21,1279-1272	1-3,1293-1291[UP5];x-x,1280-1280[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AGGGAAGGCAAAGAGAAAGUAC&AUUUUUUUUCUUU-CCUUUCUU	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN6967_c0_g1_1284_TPlot.pdf
TRINITY_DN6967_c0_g1:1285	si_s75	TRINITY_DN6967_c0_g1	1273	1294	1285	-24.00	-16.40	0.683333333333333	11	5-14,1290-1281;15-21,1279-1273	1-4,1294-1291[UP5];x-x,1280-1280[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GGGAAGGCAAAGAGAAAGUACU&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN6967_c0_g1_1285_TPlot.pdf
TRINITY_DN6967_c0_g1:1437	si_a788	TRINITY_DN6967_c0_g1	1423	1446	1437	-24.80	-16.20	0.653225806451613	10.5	1-10,1446-1437;11-12,1435-1434;13-20,1431-1424	x-x,1436-1436[BULt];x-x,1433-1432[BULt];21-21,1423-1423[UP3]	.((((((((..((.((((((((((&))))))))))-))--)))))))).	CUGGAAGAUUCGGCAAAAGUGGAA&UUCUAUUUUU-CU--AUUUUCCAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN6967_c0_g1_1437_TPlot.pdf
TRINITY_DN6967_c0_g1:271	si_s71	TRINITY_DN6967_c0_g1	256	279	271	-25.70	-17.00	0.66147859922179	7	1-4,279-276;6-16,275-265;17-21,260-256	5-5,x-x[BULq];x-x,264-261[BULt]	(((((....(((((((((((-((((&)))).)))))))))))----)))))	AGGAAACACAGAAAAAAGAU-GAAG&CUUCUAUUUUUUUUCU----UUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN6967_c0_g1_271_TPlot.pdf
TRINITY_DN69683_c0_g1:20	si_a494	TRINITY_DN69683_c0_g1	9	29	20	-29.50	-20.50	0.694915254237288	12	5-19,25-11	1-4,29-26[UP5];20-21,10-9[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUAGACGAAGGAUGACAGACU&AAUAUGUCGUUUUUCGUCUUC	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN69683_c0_g1_20_TPlot.pdf
TRINITY_DN6968_c0_g1:1815	si_a684	TRINITY_DN6968_c0_g1	1804	1825	1815	-35.80	-23.60	0.659217877094972	8	2-4,1824-1822;5-15,1820-1810;17-20,1808-1805	1-1,1825-1825[UP5];x-x,1821-1821[BULt];16-16,1809-1809[SIL];21-21,1804-1804[UP3]	.((((.(((((((((((.(((.&.)))-))))))))))).)))).	CUGUGGUCGAAGCUGUGCUGAG&UUCA-CGCGGUUUCGAACACAA	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a684_TRINITY_DN6968_c0_g1_1815_TPlot.pdf
TRINITY_DN6968_c0_g1:1816	si_a683	TRINITY_DN6968_c0_g1	1805	1826	1816	-35.80	-23.30	0.650837988826816	9	3-5,1824-1822;6-16,1820-1810;18-21,1808-1805	1-2,1826-1825[UP5];x-x,1821-1821[BULt];17-17,1809-1809[SIL]	((((.(((((((((((.(((..&..)))-))))))))))).))))	UGUGGUCGAAGCUGUGCUGAGA&AUUCA-CGCGGUUUCGAACACA	2	0.665547729033073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN6968_c0_g1_1816_TPlot.pdf
TRINITY_DN6968_c0_g1:2784	si_a784	TRINITY_DN6968_c0_g1	2770	2793	2784	-24.70	-16.40	0.663967611336032	7	2-14,2792-2780;15-18,2776-2773	1-1,2793-2793[UP5];x-x,2779-2777[BULt];19-21,2772-2770[UP3]	...((((...(((((((((((((.&.)))))))))))))---))))...	UUCAUAGCCAAAAAAUAGAAGAGG&ACUCUUCUAUUUUU---CUAUUUU	2	0.999999999997008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN6968_c0_g1_2784_TPlot.pdf
TRINITY_DN6968_c0_g1:4828	si_s400	TRINITY_DN6968_c0_g1	4817	4837	4828	-34.40	-23.20	0.674418604651163	6	1-7,4837-4831;10-14,4828-4824;16-21,4822-4817	8-9,4830-4829[SIL];15-15,4823-4823[SIL]	((((((.(((((..(((((((&)))))))..))))).))))))	UCGUUUGUCGUCGCCUUUGGA&UCCAAGGAAGACGAAAAACGA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s400_TRINITY_DN6968_c0_g1_4828_TPlot.pdf
TRINITY_DN696_c0_g1:2839	si_s841	TRINITY_DN696_c0_g1	2828	2848	2839	-34.00	-23.60	0.694117647058824	8.5	4-8,2845-2841;10-13,2839-2836;15-21,2834-2828	1-3,2848-2846[UP5];9-9,2840-2840[SIL];14-14,2835-2835[SIL]	(((((((.((((.(((((...&...))))).)))).)))))))	GUUGACUGGCUUGUUUCAUCA&AUUUGAAAGAAGCGAGUCGAC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s841_TRINITY_DN696_c0_g1_2839_TPlot.pdf
TRINITY_DN696_c0_g1:3524	si_a71	TRINITY_DN696_c0_g1	3513	3533	3524	-23.30	-16.30	0.699570815450644	6.5	1-7,3533-3527;9-14,3525-3520;16-21,3518-3513	8-8,3526-3526[SIL];15-15,3519-3519[SIL]	((((((.((((((.(((((((&))))))).)))))).))))))	UGAUGGCAGACAGCUUGGAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN696_c0_g1_3524_TPlot.pdf
TRINITY_DN696_c0_g1:5613	si_a783	TRINITY_DN696_c0_g1	5602	5621	5613	-24.70	-17.60	0.712550607287449	8.5	3-9,5619-5613;11-21,5612-5602	1-2,5621-5620[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	AAGUGGAAGGA-AGAAGGGGA&AACUCUUCUAUUUUUCUAUUU	2	0.999843442746574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN696_c0_g1_5613_TPlot.pdf
TRINITY_DN696_c0_g1:5616	si_s71	TRINITY_DN696_c0_g1	5605	5629	5616	-25.70	-16.98	0.660700389105058	16.5	1-5,5629-5625;7-20,5619-5606	6-6,5624-5620[AILt];21-21,5605-5605[UP3]	.((((((((((((((.....(((((&)))))----.)))))))))))))).	UGGAAGGAAGAAGGGGACCAGGAAG&CUUCU----AUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN696_c0_g1_5616_TPlot.pdf
TRINITY_DN696_c0_g1:5618	si_s81	TRINITY_DN696_c0_g1	5606	5630	5618	-28.90	-20.50	0.709342560553633	11.5	1-6,5630-5625;7-17,5621-5611;18-21,5609-5606	x-x,5624-5622[BULt];x-x,5610-5610[BULt]	((((.(((((((((((...((((((&))))))---)))))))))))-))))	GGAAGGAAGAAGGGGACCAGGAAGA&UUUUCU---UUCCUUUCUUC-UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN696_c0_g1_5618_TPlot.pdf
TRINITY_DN696_c0_g1:5619	si_s80	TRINITY_DN696_c0_g1	5608	5631	5619	-28.20	-20.60	0.730496453900709	11.5	1-7,5631-5625;8-20,5621-5609	x-x,5624-5622[BULt];21-21,5608-5608[UP3]	.(((((((((((((...(((((((&)))))))---))))))))))))).	AAGGAAGAAGGGGACCAGGAAGAA&UUUUUCU---UUCCUUUCUUCUUC	3	0.999999999999704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN696_c0_g1_5619_TPlot.pdf
TRINITY_DN696_c0_g1:5620	si_s79	TRINITY_DN696_c0_g1	5609	5631	5620	-26.20	-21.40	0.816793893129771	8	1-8,5631-5624;9-21,5621-5609	x-x,5623-5622[BULt]	(((((((((((((..((((((((&))))))))--)))))))))))))	AGGAAGAAGGGGACCAGGAAGAA&UUUUUUCU--UUCCUUUCUUCUU	4	0.999874024885933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN696_c0_g1_5620_TPlot.pdf
TRINITY_DN696_c0_g1:5621	si_s78	TRINITY_DN696_c0_g1	5610	5633	5621	-26.20	-21.70	0.82824427480916	11	1-9,5633-5625;10-21,5621-5610	x-x,5624-5622[BULt]	((((((((((((...(((((((((&)))))))))---))))))))))))	GGAAGAAGGGGACCAGGAAGAAGA&UUUUUUUCU---UUCCUUUCUUCU	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN696_c0_g1_5621_TPlot.pdf
TRINITY_DN696_c0_g1:5625	si_s77	TRINITY_DN696_c0_g1	5611	5634	5625	-25.50	-21.50	0.843137254901961	10.5	1-10,5634-5625;11-21,5621-5611	x-x,5624-5622[BULt]	(((((((((((...((((((((((&))))))))))---)))))))))))	GAAGAAGGGGACCAGGAAGAAGAA&UUUUUUUUCU---UUCCUUUCUUC	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN696_c0_g1_5625_TPlot.pdf
TRINITY_DN696_c0_g1:5629	si_a328	TRINITY_DN696_c0_g1	5618	5639	5629	-30.10	-23.10	0.767441860465116	7	1-9,5639-5631;11-15,5628-5624;17-21,5622-5618	10-10,5630-5629[AILt];16-16,5623-5623[SIL]	(((((.(((((..(((((((((&)))))))))-.))))).)))))	GGGACCAGGAAGAAGAAGAAUC&GAUUUUUUU-AUUCCUUGUCCC	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN696_c0_g1_5629_TPlot.pdf
TRINITY_DN696_c0_g3:401	si_a401	TRINITY_DN696_c0_g3	390	410	401	-22.60	-14.90	0.65929203539823	6	1-17,410-394	18-21,393-390[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAGGAAACAAAAUAAUUUUAU&AUAGAAUUGUUUUGUUUAUAU	2	0.99999965272465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN696_c0_g3_401_TPlot.pdf
TRINITY_DN696_c0_g3:404	si_a398	TRINITY_DN696_c0_g3	393	413	404	-22.40	-14.90	0.665178571428572	8	4-20,410-394	1-3,413-411[UP5];21-21,393-393[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GAAACAAAAUAAUUUUAUUAA&AAUAUAGAAUUGUUUUGUUUA	4	0.999999998937883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN696_c0_g3_404_TPlot.pdf
TRINITY_DN69714_c0_g1:109	si_s787	TRINITY_DN69714_c0_g1	98	118	109	-26.20	-17.90	0.683206106870229	15.5	7-17,112-102	1-6,118-113[UP5];18-21,101-98[UP3]	....(((((((((((......&......)))))))))))....	GUCCUGCGAGCUUGUGUCCUU&UAUAAAACAAGCUCGUAUUUU	4	0.900931545809897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN69714_c0_g1_109_TPlot.pdf
TRINITY_DN69723_c0_g1:256	si_a841	TRINITY_DN69723_c0_g1	245	265	256	-29.20	-19.70	0.674657534246575	11	4-20,262-246	1-3,265-263[UP5];21-21,245-245[UP3]	.(((((((((((((((((...&...))))))))))))))))).	ACAGGUUGGUGGCUUUUAGAU&AAAUAGAAGUUGCUAACUUGA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN69723_c0_g1_256_TPlot.pdf
TRINITY_DN6973_c0_g1:1496	si_s789	TRINITY_DN6973_c0_g1	1485	1505	1496	-26.20	-17.70	0.675572519083969	13	5-17,1501-1489	1-4,1505-1502[UP5];18-21,1488-1485[UP3]	....(((((((((((((....&....)))))))))))))....	AGCCGAUGCGAGUUUGUGCGG&UAAAACAAGCUCGUAUUUUAU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN6973_c0_g1_1496_TPlot.pdf
TRINITY_DN6974_c0_g1:1082	si_s67	TRINITY_DN6974_c0_g1	1071	1090	1082	-25.60	-16.70	0.65234375	7.5	1-3,1090-1088;5-8,1086-1083;10-20,1082-1072	4-4,1087-1087[SIL];9-9,x-x[BULq];21-21,1071-1071[UP3]	.(((((((((((-((((.(((&))).)))).))))))))))).	CAGAGGGAAGAU-GAAGCUGC&GCAACUUCUAUUUUUUUUCUU	2	0.999999997835717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN6974_c0_g1_1082_TPlot.pdf
TRINITY_DN6974_c0_g1:608	si_a319	TRINITY_DN6974_c0_g1	597	617	608	-22.40	-15.30	0.683035714285714	9.5	4-18,614-600	1-3,617-615[UP5];19-21,599-597[UP3]	...(((((((((((((((...&...)))))))))))))))...	CCAAAAAGAAUUAUGGAUCCA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999956019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN6974_c0_g1_608_TPlot.pdf
TRINITY_DN6974_c0_g1:609	si_a318	TRINITY_DN6974_c0_g1	598	618	609	-22.50	-15.30	0.68	10.5	5-19,614-600	1-4,618-615[UP5];20-21,599-598[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAAAAAGAAUUAUGGAUCCAA&AUUUAUCCAUGAUUUUUUUAU	2	0.999998838584942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN6974_c0_g1_609_TPlot.pdf
TRINITY_DN69768_c0_g1:175	si_s78	TRINITY_DN69768_c0_g1	163	184	175	-26.20	-17.50	0.66793893129771	8	1-12,184-173;13-17,171-167	x-x,172-172[BULt];18-21,166-163[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	UAAUGAAAGAGAAAGAAGAAGA&UUUUUUUCUUUC-CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN69768_c0_g1_175_TPlot.pdf
TRINITY_DN6978_c0_g1:1627	si_a396	TRINITY_DN6978_c0_g1	1616	1636	1627	-24.70	-17.40	0.704453441295547	8	2-10,1635-1627;13-21,1624-1616	1-1,1636-1636[UP5];11-12,1626-1625[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	AACAAAACACCUUUGUGUUCA&AGAAUAUAGAAUUGUUUUGUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN6978_c0_g1_1627_TPlot.pdf
TRINITY_DN697_c0_g1:667	si_s520	TRINITY_DN697_c0_g1	656	679	667	-24.00	-16.70	0.695833333333333	12	3-8,677-672;9-21,668-656	1-2,679-678[UP5];x-x,671-669[BULt]	(((((((((((((...((((((..&..))))))---)))))))))))))	GGAUGAUUUCGAACAUUUAGGGCA&AUUCUUAA---UUCGAAAUCAUUU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN697_c0_g1_667_TPlot.pdf
TRINITY_DN697_c0_g1:841	si_s68	TRINITY_DN697_c0_g1	828	850	841	-23.10	-15.60	0.675324675324675	8	2-12,849-839;13-19,836-830	1-1,850-850[UP5];x-x,838-837[BULt];20-21,829-828[UP3]	..(((((((..(((((((((((.&.)))))))))))--)))))))..	CCAGAAAAAAUGAAUAGAAGUUU&CAACUUCUAUUU--UUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN697_c0_g1_841_TPlot.pdf
TRINITY_DN69805_c0_g1:417	si_a70	TRINITY_DN69805_c0_g1	406	426	417	-23.90	-16.70	0.698744769874477	9	1-7,426-420;9-11,418-416;13-21,414-406	8-8,419-419[SIL];12-12,415-415[SIL]	(((((((((.(((.(((((((&))))))).))).)))))))))	AGUGGAGGAGGAUAUGGAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999996599817936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN69805_c0_g1_417_TPlot.pdf
TRINITY_DN6980_c0_g1:3574	si_a412	TRINITY_DN6980_c0_g1	3564	3583	3574	-18.30	-12.40	0.677595628415301	7.5	1-11,3583-3573;13-19,3572-3566	12-12,x-x[BULq];20-21,3565-3564[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	AUUUUGUUU-GAUAUGAACGA&UUGUUUAUAUUUAAAUAAAUA	2	0.998472989752493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN6980_c0_g1_3574_TPlot.pdf
TRINITY_DN6980_c0_g1:3575	si_a411	TRINITY_DN6980_c0_g1	3565	3584	3575	-17.90	-12.60	0.70391061452514	6.5	2-12,3583-3573;14-20,3572-3566	1-1,3584-3584[UP5];13-13,x-x[BULq];21-21,3565-3565[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	UUUUGUUU-GAUAUGAACGAU&UUUGUUUAUAUUUAAAUAAAU	4	0.999967071746998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN6980_c0_g1_3575_TPlot.pdf
TRINITY_DN6982_c0_g1:2288	si_s571	TRINITY_DN6982_c0_g1	2277	2297	2288	-29.60	-21.60	0.72972972972973	9.5	2-13,2296-2285	1-1,2297-2297[UP5];14-21,2284-2277[UP3]	........((((((((((((.&.))))))))))))........	GAGGGCUCGUUCCUUGUCCCC&CGGGACAAGGAAUAAAAAAAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN6982_c0_g1_2288_TPlot.pdf
TRINITY_DN6982_c0_g1:2314	si_s806	TRINITY_DN6982_c0_g1	2302	2323	2314	-28.60	-22.00	0.769230769230769	10	1-11,2323-2313;13-19,2310-2304	12-12,2312-2311[AILt];20-21,2303-2302[UP3]	..(((((((..(((((((((((&)))))))))))-.)))))))..	CCGAGGAGGCGAGCGAAGGUGA&UUAUCUUCGUU-ACCUUUUCUU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN6982_c0_g1_2314_TPlot.pdf
TRINITY_DN6982_c0_g1:2320	si_s800	TRINITY_DN6982_c0_g1	2308	2328	2320	-29.70	-20.40	0.686868686868687	7.5	1-3,2328-2326;5-17,2325-2313;19-21,2310-2308	4-4,x-x[BULq];18-18,2312-2311[AILt]	(((..(((((((((((((-(((&))).)))))))))))))-.)))	AGGCGAGCGAAGGUGAAG-ACG&CGUAUUUUAUCUUCGUU-ACCU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN6982_c0_g1_2320_TPlot.pdf
TRINITY_DN6982_c0_g1:2330	si_s802	TRINITY_DN6982_c0_g1	2316	2339	2330	-26.40	-18.70	0.708333333333333	8.5	1-6,2339-2334;8-15,2332-2325;16-21,2321-2316	7-7,2333-2333[SIL];x-x,2324-2322[BULt]	((((((...((((((((.((((((&)))))).))))))))---))))))	GAAGGUGAAGACGAAGAAGAAGUG&UAUUUUAUCUUCGUU---ACCUUU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN6982_c0_g1_2330_TPlot.pdf
TRINITY_DN6986_c0_g1:1806	si_a595	TRINITY_DN6986_c0_g1	1795	1814	1806	-30.30	-19.80	0.653465346534653	11	4-9,1811-1806;11-19,1805-1797	1-3,1814-1812[UP5];10-10,x-x[BULq];20-21,1796-1795[UP3]	..(((((((((-((((((...&...)))))).)))))))))..	UUUUGCGAAGG-UCUGUCGCA&AAGGACAGAAUUUUCGCAAUU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a595_TRINITY_DN6986_c0_g1_1806_TPlot.pdf
TRINITY_DN6986_c0_g1:1900	si_s208	TRINITY_DN6986_c0_g1	1888	1909	1900	-34.50	-23.60	0.684057971014493	10	1-10,1909-1900;11-16,1898-1893	x-x,1899-1899[BULt];17-21,1892-1888[UP3]	.....((((((.((((((((((&))))))))))-)))))).....	AGAAUGAACGCAAGCUGGUGCA&UGUACCAGUU-GUGUUCGAAAC	2	0.596899296967143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN6986_c0_g1_1900_TPlot.pdf
TRINITY_DN6986_c0_g1:1902	si_s206	TRINITY_DN6986_c0_g1	1890	1911	1902	-33.00	-24.80	0.751515151515152	8.5	2-12,1910-1900;13-18,1898-1893	1-1,1911-1911[UP5];x-x,1899-1899[BULt];19-21,1892-1890[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	AAUGAACGCAAGCUGGUGCAUC&AAUGUACCAGUU-GUGUUCGAA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN6986_c0_g1_1902_TPlot.pdf
TRINITY_DN6986_c0_g1:1903	si_s205	TRINITY_DN6986_c0_g1	1891	1912	1903	-34.90	-24.80	0.710601719197708	8.5	3-13,1910-1900;14-19,1898-1893	1-2,1912-1911[UP5];x-x,1899-1899[BULt];20-21,1892-1891[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	AUGAACGCAAGCUGGUGCAUCG&GAAUGUACCAGUU-GUGUUCGA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN6986_c0_g1_1903_TPlot.pdf
TRINITY_DN6986_c0_g1:1906	si_s202	TRINITY_DN6986_c0_g1	1894	1916	1906	-33.60	-22.80	0.678571428571429	9	2-4,1915-1913;6-16,1910-1900;17-21,1898-1894	1-1,1916-1916[UP5];5-5,1912-1911[AILt];x-x,1899-1899[BULt]	(((((.(((((((((((..(((.&.)))-.)))))))))))-)))))	AACGCAAGCUGGUGCAUCGCCGC&UUGG-AAUGUACCAGUU-GUGUU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN6986_c0_g1_1906_TPlot.pdf
TRINITY_DN6986_c0_g1:1907	si_s201	TRINITY_DN6986_c0_g1	1895	1917	1907	-33.60	-21.90	0.651785714285714	11	3-5,1915-1913;7-17,1910-1900;18-21,1898-1895	1-2,1917-1916[UP5];6-6,1912-1911[AILt];x-x,1899-1899[BULt]	((((.(((((((((((..(((..&..)))-.)))))))))))-))))	ACGCAAGCUGGUGCAUCGCCGCC&UUUGG-AAUGUACCAGUU-GUGU	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN6986_c0_g1_1907_TPlot.pdf
TRINITY_DN6986_c0_g1:1938	si_a55	TRINITY_DN6986_c0_g1	1924	1947	1938	-38.90	-25.40	0.652956298200514	11	1-11,1947-1937;12-15,1933-1930;17-19,1928-1926	x-x,1936-1934[BULt];16-16,1929-1929[SIL];20-21,1925-1924[UP3]	..(((.((((...(((((((((((&)))))))))))---)))).)))..	ACGAGCGGCGGCUAGUCGGCUCCU&AGGAGUCGACU---CGCUUCUUUC	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN6986_c0_g1_1938_TPlot.pdf
TRINITY_DN6986_c0_g1:3377	si_a505	TRINITY_DN6986_c0_g1	3365	3386	3377	-33.30	-22.90	0.687687687687688	8	2-10,3385-3377;11-11,3375-3375;13-19,3373-3367	1-1,3386-3386[UP5];x-x,3376-3376[BULt];12-12,3374-3374[SIL];20-21,3366-3365[UP3]	..(((((((.(.(((((((((.&.)))))))))-).)))))))..	CCCAUUCCAUGUGAAGGCGAAU&UUUCGUCUUC-CUUGGAAUGUA	3	0.996878683472526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN6986_c0_g1_3377_TPlot.pdf
TRINITY_DN6986_c0_g1:3378	si_a504	TRINITY_DN6986_c0_g1	3366	3387	3378	-32.90	-22.90	0.696048632218845	8	3-11,3385-3377;12-12,3375-3375;14-20,3373-3367	1-2,3387-3386[UP5];x-x,3376-3376[BULt];13-13,3374-3374[SIL];21-21,3366-3366[UP3]	.(((((((.(.(((((((((..&..)))))))))-).))))))).	CCAUUCCAUGUGAAGGCGAAUC&UUUUCGUCUUC-CUUGGAAUGU	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN6986_c0_g1_3378_TPlot.pdf
TRINITY_DN6988_c0_g1:839	si_a627	TRINITY_DN6988_c0_g1	829	848	839	-29.50	-23.40	0.793220338983051	5.5	2-11,847-838;13-21,837-829	1-1,848-848[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	GAAGGAUCG-CAUAAUGCGCG&GGCGUAUUAUGUCGAUUUUUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN6988_c0_g1_839_TPlot.pdf
TRINITY_DN6988_c0_g1:840	si_a626	TRINITY_DN6988_c0_g1	830	849	840	-30.20	-22.30	0.73841059602649	6	3-12,847-838;14-21,837-830	1-2,849-848[UP5];13-13,x-x[BULq]	((((((((-((((((((((..&..)))))))))).))))))))	AAGGAUCG-CAUAAUGCGCGG&AGGCGUAUUAUGUCGAUUUUU	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN6988_c0_g1_840_TPlot.pdf
TRINITY_DN6988_c0_g1:841	si_a625	TRINITY_DN6988_c0_g1	831	850	841	-30.60	-21.40	0.699346405228758	8	4-13,847-838;15-21,837-831	1-3,850-848[UP5];14-14,x-x[BULq]	(((((((-((((((((((...&...)))))))))).)))))))	AGGAUCG-CAUAAUGCGCGGU&UAGGCGUAUUAUGUCGAUUUU	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN6988_c0_g1_841_TPlot.pdf
TRINITY_DN69900_c0_g1:18	si_s84	TRINITY_DN69900_c0_g1	8	27	18	-32.30	-21.40	0.662538699690402	6	1-10,27-18;13-21,16-8	11-12,17-17[AILq]	(((((((((.-((((((((((&))))))))))..)))))))))	UGGGGAAGAU-AAAGGAAAGG&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN69900_c0_g1_18_TPlot.pdf
TRINITY_DN6995_c0_g1:1413	si_a461	TRINITY_DN6995_c0_g1	1402	1422	1413	-21.50	-14.56	0.677209302325581	7	1-9,1422-1414;14-21,1409-1402	10-13,1413-1410[SIL]	((((((((....(((((((((&)))))))))....))))))))	AAUUACAUUCUUUAUAUAACA&UGUUAUAUAUAAUAUGUAAUU	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN6995_c0_g1_1413_TPlot.pdf
TRINITY_DN6995_c0_g1:1414	si_a460	TRINITY_DN6995_c0_g1	1403	1423	1414	-21.60	-14.46	0.669444444444444	6	1-10,1423-1414;15-21,1409-1403	11-14,1413-1410[SIL]	(((((((....((((((((((&))))))))))....)))))))	AUUACAUUCUUUAUAUAACAA&UUGUUAUAUAUAAUAUGUAAU	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN6995_c0_g1_1414_TPlot.pdf
TRINITY_DN6995_c0_g1:1417	si_a480	TRINITY_DN6995_c0_g1	1406	1426	1417	-23.70	-15.80	0.666666666666667	4.5	2-15,1425-1412;18-21,1409-1406	1-1,1426-1426[UP5];16-17,1411-1410[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	ACAUUCUUUAUAUAACAAUGU&UUAUUGUUAUAUAGAAUAUGU	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN6995_c0_g1_1417_TPlot.pdf
TRINITY_DN6997_c0_g1:3496	si_s92	TRINITY_DN6997_c0_g1	3484	3505	3496	-34.90	-23.70	0.679083094555874	7	1-14,3505-3492;16-18,3489-3487;20-21,3485-3484	15-15,3491-3490[AILt];19-19,3486-3486[SIL]	((.(((..((((((((((((((&))))))))))))))-.))).))	GUGCGAUUGUGGAGAGGAAGGA&UUCUUCUUCUUCGC-UUCGGAU	4	0.999999999022058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN6997_c0_g1_3496_TPlot.pdf
TRINITY_DN6997_c0_g1:3497	si_s91	TRINITY_DN6997_c0_g1	3485	3506	3497	-34.70	-23.30	0.671469740634006	6.5	1-15,3506-3492;17-19,3489-3487;21-21,3485-3485	16-16,3491-3490[AILt];20-20,3486-3486[SIL]	(.(((..(((((((((((((((&)))))))))))))))-.))).)	UGCGAUUGUGGAGAGGAAGGAA&UUUCUUCUUCUUCGC-UUCGGA	3	0.999999999999002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN6997_c0_g1_3497_TPlot.pdf
TRINITY_DN6997_c0_g1:3576	si_a414	TRINITY_DN6997_c0_g1	3565	3586	3576	-18.10	-11.80	0.651933701657459	7	1-9,3586-3578;10-17,3576-3569	x-x,3577-3577[BULt];18-21,3568-3565[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	UGAUUUUAUUUAUAAUAUGAAC&GUUUAUAUU-UAAAUAAAUAUA	3	0.999999911084252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN6997_c0_g1_3576_TPlot.pdf
TRINITY_DN6998_c0_g1:1511	si_s691	TRINITY_DN6998_c0_g1	1500	1520	1511	-26.20	-17.70	0.675572519083969	6	2-2,1519-1519;4-14,1517-1507;16-21,1505-1500	1-1,1520-1520[UP5];3-3,1518-1518[SIL];15-15,1506-1506[SIL]	((((((.(((((((((((.(.&.).))))))))))).))))))	AUAGAUGGGCUAAUUGAAGUG&GAGUUUAAUUAGUCGAUUUAU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN6998_c0_g1_1511_TPlot.pdf
TRINITY_DN699_c0_g2:533	si_a544	TRINITY_DN699_c0_g2	520	542	533	-28.90	-19.08	0.660207612456747	9.5	1-12,542-531;15-18,526-523	13-14,530-527[AILt];19-21,522-520[UP3]	...((((....((((((((((((&))))))))))))--..))))...	UUUGGAACCAAAGAUUGAACCGA&UCGGUUCAAUCU--AUUUCUUUA	2	0.990718684271405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN699_c0_g2_533_TPlot.pdf
TRINITY_DN699_c0_g2:537	si_a540	TRINITY_DN699_c0_g2	526	546	537	-34.00	-22.40	0.658823529411765	9	1-2,546-545;5-16,542-531	3-4,544-543[SIL];17-21,530-526[UP3]	.....((((((((((((..((&))..)))))))))))).....	ACCAAAGAUUGAACCGAAAGC&GCGAUCGGUUCAAUCUAUUUC	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a540_TRINITY_DN699_c0_g2_537_TPlot.pdf
TRINITY_DN699_c0_g2:538	si_a539	TRINITY_DN699_c0_g2	527	547	538	-32.70	-22.50	0.688073394495413	9	2-3,546-545;6-17,542-531	1-1,547-547[UP5];4-5,544-543[SIL];18-21,530-527[UP3]	....((((((((((((..((.&.))..))))))))))))....	CCAAAGAUUGAACCGAAAGCA&AGCGAUCGGUUCAAUCUAUUU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN699_c0_g2_538_TPlot.pdf
TRINITY_DN69_c0_g1:1180	si_s696	TRINITY_DN69_c0_g1	1166	1189	1180	-26.30	-17.80	0.67680608365019	11	1-11,1189-1179;12-20,1175-1167	x-x,1178-1176[BULt];21-21,1166-1166[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	GGCUGGUAGAGACUUGACUGAUUA&UAAUUAGUCGA---UUUAUUAGUG	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN69_c0_g1_1180_TPlot.pdf
TRINITY_DN69_c0_g1:1181	si_s695	TRINITY_DN69_c0_g1	1167	1190	1181	-24.70	-17.80	0.720647773279352	11	2-12,1189-1179;13-21,1175-1167	1-1,1190-1190[UP5];x-x,1178-1176[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	GCUGGUAGAGACUUGACUGAUUAC&UUAAUUAGUCGA---UUUAUUAGU	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN69_c0_g1_1181_TPlot.pdf
TRINITY_DN69_c0_g1:1182	si_s694	TRINITY_DN69_c0_g1	1168	1191	1182	-23.90	-16.20	0.677824267782427	9.5	3-13,1189-1179;14-21,1175-1168	1-2,1191-1190[UP5];x-x,1178-1176[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	CUGGUAGAGACUUGACUGAUUACC&UUUAAUUAGUCGA---UUUAUUAG	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN69_c0_g1_1182_TPlot.pdf
TRINITY_DN69_c0_g1:1188	si_s688	TRINITY_DN69_c0_g1	1177	1196	1188	-28.20	-19.10	0.677304964539007	7	1-6,1196-1191;9-19,1189-1179	7-8,1190-1190[AILq];20-21,1178-1177[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	ACUUGACUGAUUAC-CUCAUG&CAUGAGUUUAAUUAGUCGAUU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s688_TRINITY_DN69_c0_g1_1188_TPlot.pdf
TRINITY_DN69_c0_g1:1189	si_s687	TRINITY_DN69_c0_g1	1178	1197	1189	-29.00	-19.10	0.658620689655173	7	2-7,1196-1191;10-20,1189-1179	1-1,1197-1197[UP5];8-9,1190-1190[AILq];21-21,1178-1178[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	CUUGACUGAUUAC-CUCAUGA&ACAUGAGUUUAAUUAGUCGAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s687_TRINITY_DN69_c0_g1_1189_TPlot.pdf
TRINITY_DN69_c0_g1:1190	si_s686	TRINITY_DN69_c0_g1	1179	1198	1190	-28.80	-19.00	0.659722222222222	8	3-8,1196-1191;11-21,1189-1179	1-2,1198-1197[UP5];9-10,1190-1190[AILq]	(((((((((((.-((((((..&..))))))..)))))))))))	UUGACUGAUUAC-CUCAUGAA&AACAUGAGUUUAAUUAGUCGA	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s686_TRINITY_DN69_c0_g1_1190_TPlot.pdf
TRINITY_DN69_c0_g1:3035	si_a341	TRINITY_DN69_c0_g1	3024	3044	3035	-27.80	-18.20	0.654676258992806	10	1-8,3044-3037;10-14,3035-3031	9-9,3036-3036[SIL];15-21,3030-3024[UP3]	.......(((((.((((((((&)))))))).))))).......	UAUGCCCAUUUUGGGGGCAAG&CUUGUCCCGAAAAUAUUAAUU	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN69_c0_g1_3035_TPlot.pdf
TRINITY_DN69_c0_g1:448	si_a456	TRINITY_DN69_c0_g1	437	457	448	-22.80	-15.60	0.684210526315789	10.5	1-15,457-443	16-21,442-437[UP3]	......(((((((((((((((&)))))))))))))))......	GACAACAUGUGUGACGACGAU&AUUGUUGUUAUAUAUAAUAUG	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN69_c0_g1_448_TPlot.pdf
TRINITY_DN69_c0_g2:655	si_a424	TRINITY_DN69_c0_g2	644	664	655	-28.40	-18.50	0.651408450704225	14.5	7-10,658-655;12-21,653-644	1-6,664-659[UP5];11-11,654-654[SIL]	((((((((((.((((......&......)))).))))))))))	CAAUGGAUCCGGUAUGUGCAA&AAAUAAAUAUAGGAUCCGUUG	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN69_c0_g2_655_TPlot.pdf
TRINITY_DN7000_c0_g1:2325	si_a600	TRINITY_DN7000_c0_g1	2314	2334	2325	-29.70	-21.80	0.734006734006734	6	3-4,2332-2331;6-21,2329-2314	1-2,2334-2333[UP5];5-5,2330-2330[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	AUUGGAAUUGUGAAAAAUCGA&CAGAAUUUUCGCAAUUCCAAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN7000_c0_g1_2325_TPlot.pdf
TRINITY_DN7000_c0_g2:14	si_a639	TRINITY_DN7000_c0_g2	3	23	14	-23.60	-17.90	0.758474576271186	5	2-4,22-20;6-21,18-3	1-1,23-23[UP5];5-5,19-19[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GUGUAUUACUCAAAAAUAUUA&CGAUUUUUUUGAGUAAUAUAU	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN7000_c0_g2_14_TPlot.pdf
TRINITY_DN7000_c0_g2:15	si_a638	TRINITY_DN7000_c0_g2	4	24	15	-24.40	-16.60	0.680327868852459	6.5	3-5,22-20;7-21,18-4	1-2,24-23[UP5];6-6,19-19[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UGUAUUACUCAAAAAUAUUAU&UCGAUUUUUUUGAGUAAUAUA	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN7000_c0_g2_15_TPlot.pdf
TRINITY_DN7000_c0_g2:841	si_a401	TRINITY_DN7000_c0_g2	830	850	841	-22.60	-16.30	0.721238938053097	7	1-10,850-841;12-17,839-834	11-11,840-840[SIL];18-21,833-830[UP3]	....((((((.((((((((((&)))))))))).))))))....	AUCAAAACAAUACAGUUCUAU&AUAGAAUUGUUUUGUUUAUAU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN7000_c0_g2_841_TPlot.pdf
TRINITY_DN7000_c0_g2:870	si_s50	TRINITY_DN7000_c0_g2	859	879	870	-29.00	-27.50	0.948275862068966	6.5	3-20,877-860	1-2,879-878[UP5];21-21,859-859[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUGCUGACUUGAGAUCCGAGU&AAUUGGAUUUCAAGUUAGCAA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN7000_c0_g2_870_TPlot.pdf
TRINITY_DN70019_c0_g1:119	si_s312	TRINITY_DN70019_c0_g1	106	128	119	-29.00	-19.20	0.662068965517241	14	6-13,123-116;14-20,113-107	1-5,128-124[UP5];x-x,115-114[BULt];21-21,106-106[UP3]	.(((((((..((((((((.....&.....))))))))--))))))).	AAGCAGGAUCAGGGCAGAUCAGU&AAAAUUCUGUCCU--UCUUGUUA	4	0.999999999998592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN70019_c0_g1_119_TPlot.pdf
TRINITY_DN7003_c1_g1:503	si_a410	TRINITY_DN7003_c1_g1	492	512	503	-17.80	-11.70	0.657303370786517	8.5	1-14,512-499	15-21,498-492[UP3]	.......((((((((((((((&)))))))))))))).......	CCAAAAGGGAUAUAAACAAAG&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7003_c1_g1_503_TPlot.pdf
TRINITY_DN7003_c1_g1:510	si_a403	TRINITY_DN7003_c1_g1	499	519	510	-22.00	-14.40	0.654545454545455	6	3-21,517-499	1-2,519-518[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GGAUAUAAACAAAGUAAUUAG&AGAAUUGUUUUGUUUAUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7003_c1_g1_510_TPlot.pdf
TRINITY_DN7003_c1_g1:6946	si_a793	TRINITY_DN7003_c1_g1	6935	6955	6946	-28.50	-19.50	0.684210526315789	9	1-8,6955-6948;11-14,6945-6942;16-20,6940-6936	9-10,6947-6946[SIL];15-15,6941-6941[SIL];21-21,6935-6935[UP3]	.(((((.((((..((((((((&))))))))..)))).))))).	GCGGGUCGGAAUUUAGAGAGG&UUUUUCUAUUUUCCAAUCCGA	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7003_c1_g1_6946_TPlot.pdf
TRINITY_DN7003_c1_g1:7495	si_a70	TRINITY_DN7003_c1_g1	7475	7504	7495	-23.90	-16.70	0.698744769874477	13	1-14,7504-7491;15-20,7481-7476	x-x,7490-7482[BULt];21-21,7475-7475[UP3]	.((((((.........((((((((((((((&))))))))))))))---------)))))).	UGUGAGAUAUGUAACAAACAGUUUGGAAGA&UCUUUCAAAUUGUU---------UUUCAUU	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN7003_c1_g1_7495_TPlot.pdf
TRINITY_DN7003_c1_g1:8798	si_a463	TRINITY_DN7003_c1_g1	8783	8807	8798	-19.70	-13.00	0.65989847715736	8.5	1-13,8807-8795;14-19,8790-8785	x-x,8794-8791[BULt];20-21,8784-8783[UP3]	..((((((....(((((((((((((&)))))))))))))----))))))..	UAGAUUACUAAAAUGUUAUGUAUAA&UUAUAUAUAAUAU----GUAAUUAU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN7003_c1_g1_8798_TPlot.pdf
TRINITY_DN7005_c0_g1:637	si_a762	TRINITY_DN7005_c0_g1	626	646	637	-29.70	-19.90	0.67003367003367	4.5	2-20,645-627	1-1,646-646[UP5];21-21,626-626[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	CGAUUGAUCAAAAACUCAAAU&CUUUGGGUUUUUGAUUGAUUC	2	0.999871711273646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN7005_c0_g1_637_TPlot.pdf
TRINITY_DN7006_c0_g1:3433	si_s804	TRINITY_DN7006_c0_g1	3422	3449	3433	-27.90	-19.60	0.702508960573477	20	3-7,3447-3443;8-21,3435-3422	1-2,3449-3448[UP5];x-x,3442-3436[BULt]	((((((((((((((.......(((((..&..)))))-------))))))))))))))	GGAGAGGUAACGAGCUUUGCUGAUGAUA&UUUUAUC-------UUCGUUACCUUUUC	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN7006_c0_g1_3433_TPlot.pdf
TRINITY_DN7006_c2_g1:1031	si_a443	TRINITY_DN7006_c2_g1	1020	1043	1031	-30.00	-20.40	0.68	8.5	1-6,1043-1038;7-20,1034-1021	x-x,1037-1035[BULt];21-21,1020-1020[UP3]	.((((((((((((((...((((((&))))))---)))))))))))))).	UUAACAAUUAUCUUAAACUAUCCA&UGGAUA---UGAGAUAAUUGUUGU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN7006_c2_g1_1031_TPlot.pdf
TRINITY_DN7006_c2_g1:1032	si_a442	TRINITY_DN7006_c2_g1	1021	1044	1032	-29.30	-20.50	0.699658703071672	8.5	2-7,1043-1038;8-21,1034-1021	1-1,1044-1044[UP5];x-x,1037-1035[BULt]	((((((((((((((...((((((.&.))))))---))))))))))))))	UAACAAUUAUCUUAAACUAUCCAC&UUGGAUA---UGAGAUAAUUGUUG	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN7006_c2_g1_1032_TPlot.pdf
TRINITY_DN7007_c1_g1:24	si_s71	TRINITY_DN7007_c1_g1	13	35	24	-25.70	-18.60	0.723735408560311	7.5	1-9,35-27;10-19,24-15	x-x,26-25[BULt];20-21,14-13[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	CAGAAGGAAAAAAUGAAUAGAAG&CUUCUAUUU--UUUUUCUUUCCU	3	0.999999999890631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN7007_c1_g1_24_TPlot.pdf
TRINITY_DN7007_c1_g1:75	si_a801	TRINITY_DN7007_c1_g1	64	84	75	-34.60	-23.00	0.664739884393064	9	4-7,81-78;9-18,76-67;20-21,65-64	1-3,84-82[UP5];8-8,77-77[SIL];19-19,66-66[SIL]	((.((((((((((.((((...&...)))).)))))))))).))	UCAUCGCUUUGGAAUGGAUUU&UUUUCCAAUCCGAAGCGAAGA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN7007_c1_g1_75_TPlot.pdf
TRINITY_DN70095_c0_g1:152	si_s898	TRINITY_DN70095_c0_g1	140	161	152	-30.70	-22.90	0.745928338762215	5	2-14,160-148;15-18,146-143	1-1,161-161[UP5];x-x,147-147[BULt];19-21,142-140[UP3]	...((((.(((((((((((((.&.)))))))))))))-))))...	ACAGAAACUUGAAGAGAAAGCA&GGCUUUCUCUUCAA-UUUCAAU	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN70095_c0_g1_152_TPlot.pdf
TRINITY_DN70095_c0_g1:153	si_s897	TRINITY_DN70095_c0_g1	141	162	153	-31.30	-22.90	0.731629392971246	6	3-15,160-148;16-19,146-143	1-2,162-161[UP5];x-x,147-147[BULt];20-21,142-141[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	CAGAAACUUGAAGAGAAAGCAC&AGGCUUUCUCUUCAA-UUUCAA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN70095_c0_g1_153_TPlot.pdf
TRINITY_DN70095_c0_g1:155	si_s895	TRINITY_DN70095_c0_g1	143	164	155	-31.10	-22.40	0.720257234726688	8	5-17,160-148;18-21,146-143	1-4,164-161[UP5];x-x,147-147[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	GAAACUUGAAGAGAAAGCACAA&AUAGGCUUUCUCUUCAA-UUUC	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN70095_c0_g1_155_TPlot.pdf
TRINITY_DN70095_c0_g1:156	si_s894	TRINITY_DN70095_c0_g1	145	165	156	-29.10	-20.20	0.694158075601375	12	6-18,160-148	1-5,165-161[UP5];19-21,147-145[UP3]	...(((((((((((((.....&.....)))))))))))))...	AACUUGAAGAGAAAGCACAAA&AAUAGGCUUUCUCUUCAAUUU	2	0.996696531540888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN70095_c0_g1_156_TPlot.pdf
TRINITY_DN70095_c0_g1:157	si_s893	TRINITY_DN70095_c0_g1	146	166	157	-29.10	-20.20	0.694158075601375	13	7-19,160-148	1-6,166-161[UP5];20-21,147-146[UP3]	..(((((((((((((......&......)))))))))))))..	ACUUGAAGAGAAAGCACAAAA&AAAUAGGCUUUCUCUUCAAUU	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN70095_c0_g1_157_TPlot.pdf
TRINITY_DN70095_c0_g1:160	si_s890	TRINITY_DN70095_c0_g1	149	169	160	-29.50	-19.20	0.650847457627119	17	10-21,160-149	1-9,169-161[UP5]	((((((((((((.........&.........))))))))))))	UGAAGAGAAAGCACAAAAGGC&AAUAAAUAGGCUUUCUCUUCA	3	0.999999106193394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN70095_c0_g1_160_TPlot.pdf
TRINITY_DN7009_c0_g1:21	si_a402	TRINITY_DN7009_c0_g1	10	30	21	-22.40	-15.90	0.709821428571429	4.5	1-13,30-18;15-21,16-10	14-14,17-17[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GAUGUAAUUGAAAUAAUUCUA&UAGAAUUGUUUUGUUUAUAUU	0	0.200391281706514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN7009_c0_g1_21_TPlot.pdf
TRINITY_DN7009_c0_g1:22	si_a401	TRINITY_DN7009_c0_g1	11	31	22	-22.60	-14.80	0.654867256637168	4.5	2-14,30-18;16-21,16-11	1-1,31-31[UP5];15-15,17-17[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AUGUAAUUGAAAUAAUUCUAA&AUAGAAUUGUUUUGUUUAUAU	3	0.999999999998563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN7009_c0_g1_22_TPlot.pdf
TRINITY_DN7010_c0_g1:516	si_s64	TRINITY_DN7010_c0_g1	505	526	516	-24.10	-16.40	0.680497925311203	5.5	1-5,526-522;7-12,519-514;14-21,512-505	6-6,521-520[AILt];13-13,513-513[SIL]	((((((((.((((((..(((((&)))))-.)))))).))))))))	AAAAGAAAAAGAAGUGAGCUAA&UUAGC-AACUUCUAUUUUUUUU	3	0.999999954412122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN7010_c0_g1_516_TPlot.pdf
TRINITY_DN7012_c0_g1:1687	si_s798	TRINITY_DN7012_c0_g1	1667	1696	1687	-29.30	-19.60	0.668941979522184	21	1-6,1696-1691;8-11,1689-1686;12-21,1676-1667	7-7,1690-1690[SIL];x-x,1685-1677[BULt]	((((((((((.........((((.((((((&)))))).))))---------))))))))))	GUAACGGGGAUGUACGACUUAAAUUACGAG&CUCGUAUUUUA---------UCUUCGUUAC	2	0.992673290620823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN7012_c0_g1_1687_TPlot.pdf
TRINITY_DN7012_c0_g1:595	si_a316	TRINITY_DN7012_c0_g1	584	604	595	-26.30	-18.04	0.685931558935361	11	1-3,604-602;9-21,596-584	4-8,601-597[SIL]	(((((((((((((.....(((&))).....)))))))))))))	AAAGAAGUCAUGGUAGCCUCC&GGAUUUAUCCAUGAUUUUUUU	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN7012_c0_g1_595_TPlot.pdf
TRINITY_DN7012_c0_g1:648	si_a775	TRINITY_DN7012_c0_g1	637	657	648	-27.20	-19.10	0.702205882352941	12	6-19,652-639	1-5,657-653[UP5];20-21,638-637[UP3]	..((((((((((((((.....&.....))))))))))))))..	CUGUGGAAGAGUUGAAGGGUU&AUUGAUUCAACUCUUCUAUUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN7012_c0_g1_648_TPlot.pdf
TRINITY_DN7012_c0_g1:649	si_a782	TRINITY_DN7012_c0_g1	638	658	649	-26.40	-21.70	0.821969696969697	6.5	1-9,658-650;11-20,648-639	10-10,649-649[SIL];21-21,638-638[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UGUGGAAGAGUUGAAGGGUUG&CAACUCUUCUAUUUUUCUAUU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN7012_c0_g1_649_TPlot.pdf
TRINITY_DN7012_c0_g1:945	si_s633	TRINITY_DN7012_c0_g1	933	954	945	-37.90	-25.80	0.680738786279683	8	2-6,953-949;8-13,947-942;15-20,939-934	1-1,954-954[UP5];7-7,948-948[SIL];14-14,941-940[AILt];21-21,933-933[UP3]	.((((((..((((((.(((((.&.))))).))))))-.)))))).	UGGGCGGUUCGCCUGGGAAAAU&CUUUUCGUAGGCG-UUUGCCCU	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN7012_c0_g1_945_TPlot.pdf
TRINITY_DN70139_c0_g1:162	si_a788	TRINITY_DN70139_c0_g1	144	171	162	-24.80	-16.60	0.669354838709677	18.5	1-10,171-162;11-21,154-144	x-x,161-155[BULt]	(((((((((((.......((((((((((&))))))))))-------)))))))))))	UUGGGAAAUGGUUGGCAAAGAAAUGGGA&UUCUAUUUUU-------CUAUUUUCCAA	4	0.999999999997331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN70139_c0_g1_162_TPlot.pdf
TRINITY_DN7015_c0_g1:1024	si_a783	TRINITY_DN7015_c0_g1	1012	1033	1024	-24.70	-16.20	0.65587044534413	12	3-13,1031-1021;14-17,1019-1016	1-2,1033-1032[UP5];x-x,1020-1020[BULt];18-21,1015-1012[UP3]	....((((.(((((((((((..&..)))))))))))-))))....	CUAAGGAGCAAGUGGAGGAGGU&AACUCUUCUAUUU-UUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7015_c0_g1_1024_TPlot.pdf
TRINITY_DN70179_c0_g1:216	si_a498	TRINITY_DN70179_c0_g1	198	225	216	-33.50	-25.20	0.752238805970149	17.5	2-11,224-215;12-21,207-198	1-1,225-225[UP5];x-x,214-208[BULt]	((((((((((.......((((((((((.&.))))))))))-------))))))))))	CAGGGAAGAUAAGGGAAGAGAAACGACG&UGUCGUUUUUC-------GUCUUCCUUG	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN70179_c0_g1_216_TPlot.pdf
TRINITY_DN70179_c0_g1:217	si_a497	TRINITY_DN70179_c0_g1	199	226	217	-32.00	-22.70	0.709375	19	3-12,224-215;13-21,207-199	1-2,226-225[UP5];x-x,214-208[BULt]	(((((((((.......((((((((((..&..))))))))))-------)))))))))	AGGGAAGAUAAGGGAAGAGAAACGACGG&AUGUCGUUUUUC-------GUCUUCCUU	3	0.999996002057448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN70179_c0_g1_217_TPlot.pdf
TRINITY_DN7017_c0_g1:1011	si_a789	TRINITY_DN7017_c0_g1	1000	1021	1011	-24.80	-17.20	0.693548387096774	7.5	1-3,1021-1019;4-4,1017-1017;6-19,1015-1002	x-x,1018-1018[BULt];5-5,1016-1016[SIL];20-21,1001-1000[UP3]	..((((((((((((((.(.(((&)))-).))))))))))))))..	ACUGGGAAAUAGAGAAUUAAGA&UCU-AUUUUUCUAUUUUCCAAU	3	0.999999450154812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN7017_c0_g1_1011_TPlot.pdf
TRINITY_DN7017_c0_g1:1012	si_a788	TRINITY_DN7017_c0_g1	1001	1022	1012	-24.80	-17.90	0.721774193548387	6.5	1-4,1022-1019;5-5,1017-1017;7-20,1015-1002	x-x,1018-1018[BULt];6-6,1016-1016[SIL];21-21,1001-1001[UP3]	.((((((((((((((.(.((((&))))-).)))))))))))))).	CUGGGAAAUAGAGAAUUAAGAA&UUCU-AUUUUUCUAUUUUCCAA	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7017_c0_g1_1012_TPlot.pdf
TRINITY_DN7017_c0_g1:1013	si_a787	TRINITY_DN7017_c0_g1	1002	1023	1013	-26.30	-17.80	0.67680608365019	6.5	2-5,1022-1019;6-6,1017-1017;8-21,1015-1002	1-1,1023-1023[UP5];x-x,1018-1018[BULt];7-7,1016-1016[SIL]	((((((((((((((.(.((((.&.))))-).))))))))))))))	UGGGAAAUAGAGAAUUAAGAAU&CUUCU-AUUUUUCUAUUUUCCA	3	0.999999999990558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7017_c0_g1_1013_TPlot.pdf
TRINITY_DN7017_c0_g1:564	si_s482	TRINITY_DN7017_c0_g1	554	573	564	-21.20	-13.80	0.650943396226415	6.5	1-11,573-563;13-18,562-557	12-12,x-x[BULq];19-21,556-554[UP3]	...((((((-(((((((((((&))))))))))).))))))...	CUUUUUAAG-AAAUAUGGGAU&AUCCUAUAUUUAUUUAAAUAU	4	0.999996869783681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN7017_c0_g1_564_TPlot.pdf
TRINITY_DN7017_c0_g1:681	si_s426	TRINITY_DN7017_c0_g1	670	691	681	-23.60	-15.70	0.665254237288135	6.5	1-3,691-689;4-15,687-676;17-19,674-672	x-x,688-688[BULt];16-16,675-675[SIL];20-21,671-670[UP3]	..(((.((((((((((((.(((&)))-)))))))))))).)))..	CAGUGUUUAUUGUUAUGUAAGA&UCU-AUAUAACAAUAAUUACAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN7017_c0_g1_681_TPlot.pdf
TRINITY_DN7019_c0_g1:1782	si_s91	TRINITY_DN7019_c0_g1	1768	1791	1782	-34.70	-24.80	0.714697406340058	10	1-12,1791-1780;13-16,1776-1773;18-21,1771-1768	x-x,1779-1777[BULt];17-17,1772-1772[SIL]	((((.((((...((((((((((((&))))))))))))---)))).))))	UCCGCAGCGCCGGAGAAGAAGGGA&UUUCUUCUUCUU---CGCUUCGGA	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN7019_c0_g1_1782_TPlot.pdf
TRINITY_DN7019_c0_g1:1796	si_a486	TRINITY_DN7019_c0_g1	1785	1805	1796	-24.90	-16.50	0.662650602409639	8	3-12,1803-1794;14-16,1792-1790;18-21,1788-1785	1-2,1805-1804[UP5];13-13,1793-1793[SIL];17-17,1789-1789[SIL]	((((.(((.((((((((((..&..)))))))))).))).))))	GAAGGGACUUGUUCUGUAUCC&UUAUAUAGAAUAUGUCGUUUU	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN7019_c0_g1_1796_TPlot.pdf
TRINITY_DN7019_c0_g1:214	si_s896	TRINITY_DN7019_c0_g1	202	223	214	-31.60	-22.60	0.715189873417722	6	2-6,222-218;8-15,216-209;16-21,207-202	1-1,223-223[UP5];7-7,217-217[SIL];x-x,208-208[BULt]	((((((.((((((((.(((((.&.))))).))))))))-))))))	UGAAGUCUGGAGGGACAGCCUC&UAGGCUUUCUCUUCA-AUUUCA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN7019_c0_g1_214_TPlot.pdf
TRINITY_DN7019_c0_g1:737	si_a498	TRINITY_DN7019_c0_g1	726	746	737	-33.50	-22.50	0.671641791044776	9.5	2-7,745-740;10-18,737-729	1-1,746-746[UP5];8-9,739-738[SIL];19-21,728-726[UP3]	...(((((((((..((((((.&.))))))..)))))))))...	ACUGGAGGACGGUCAACGACG&UGUCGUUUUUCGUCUUCCUUG	2	0.999999094514339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN7019_c0_g1_737_TPlot.pdf
TRINITY_DN7019_c0_g1:738	si_a497	TRINITY_DN7019_c0_g1	727	747	738	-32.00	-22.50	0.703125	10.5	3-8,745-740;11-19,737-729	1-2,747-746[UP5];9-10,739-738[SIL];20-21,728-727[UP3]	..(((((((((..((((((..&..))))))..)))))))))..	CUGGAGGACGGUCAACGACGA&AUGUCGUUUUUCGUCUUCCUU	4	0.999999833058674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7019_c0_g1_738_TPlot.pdf
TRINITY_DN7019_c0_g1:739	si_a496	TRINITY_DN7019_c0_g1	728	748	739	-32.40	-22.50	0.694444444444444	11.5	4-9,745-740;12-20,737-729	1-3,748-746[UP5];10-11,739-738[SIL];21-21,728-728[UP3]	.(((((((((..((((((...&...))))))..))))))))).	UGGAGGACGGUCAACGACGAG&UAUGUCGUUUUUCGUCUUCCU	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN7019_c0_g1_739_TPlot.pdf
TRINITY_DN7019_c0_g1:740	si_a495	TRINITY_DN7019_c0_g1	729	749	740	-31.90	-22.10	0.692789968652038	12	5-10,745-740;13-21,737-729	1-4,749-746[UP5];11-12,739-738[SIL]	(((((((((..((((((....&....))))))..)))))))))	GGAGGACGGUCAACGACGAGU&AUAUGUCGUUUUUCGUCUUCC	3	0.99996847900931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN7019_c0_g1_740_TPlot.pdf
TRINITY_DN7019_c0_g1:741	si_a494	TRINITY_DN7019_c0_g1	730	750	741	-29.50	-19.60	0.664406779661017	8	1-3,750-748;5-11,746-740;14-21,737-730	4-4,747-747[SIL];12-13,739-738[SIL]	((((((((..(((((((.(((&))).)))))))..))))))))	GAGGACGGUCAACGACGAGUU&AAUAUGUCGUUUUUCGUCUUC	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN7019_c0_g1_741_TPlot.pdf
TRINITY_DN7021_c0_g1:1442	si_a353	TRINITY_DN7021_c0_g1	1429	1451	1442	-24.00	-15.70	0.654166666666667	9	4-13,1448-1439;15-21,1435-1429	1-3,1451-1449[UP5];14-14,1438-1436[AILt]	(((((((...((((((((((...&...))))))))))--.)))))))	CGAUCAACUUAUGGAAUUAAAAA&AUAUUAAUUCUAU--UUUGAUCG	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN7021_c0_g1_1442_TPlot.pdf
TRINITY_DN7021_c0_g1:1570	si_s92	TRINITY_DN7021_c0_g1	1558	1579	1570	-34.90	-23.30	0.667621776504298	6	1-6,1579-1574;8-13,1572-1567;14-18,1565-1561	7-7,1573-1573[SIL];x-x,1566-1566[BULt];19-21,1560-1558[UP3]	...(((((.((((((.((((((&)))))).))))))-)))))...	AGACGAAGACGAAGAUGAAGAA&UUCUUCUUCUUCG-CUUCGGAU	4	0.999999999998924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN7021_c0_g1_1570_TPlot.pdf
TRINITY_DN7021_c0_g1:1572	si_s90	TRINITY_DN7021_c0_g1	1560	1584	1572	-35.30	-25.50	0.722379603399434	9	1-9,1584-1576;10-15,1572-1567;16-20,1565-1561	x-x,1575-1573[BULt];x-x,1566-1566[BULt];21-21,1560-1560[UP3]	.(((((.((((((...(((((((((&)))))))))---))))))-))))).	ACGAAGACGAAGAUGAAGAAGAGAG&CUUUCUUCU---UCUUCG-CUUCGG	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN7021_c0_g1_1572_TPlot.pdf
TRINITY_DN7021_c0_g1:1579	si_s86	TRINITY_DN7021_c0_g1	1564	1589	1579	-32.90	-21.70	0.659574468085106	7	1-4,1589-1586;5-13,1584-1576;14-19,1572-1567;20-21,1565-1564	x-x,1585-1585[BULt];x-x,1575-1573[BULt];x-x,1566-1566[BULt]	((.((((((...(((((((((.((((&))))-)))))))))---))))))-))	AGACGAAGAUGAAGAAGAGAGUGAAA&UUUC-CUUUCUUCU---UCUUCG-CU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7021_c0_g1_1579_TPlot.pdf
TRINITY_DN7021_c0_g1:1584	si_s81	TRINITY_DN7021_c0_g1	1573	1594	1584	-28.90	-20.60	0.71280276816609	11	5-9,1590-1586;10-20,1584-1574	1-4,1594-1591[UP5];x-x,1585-1585[BULt];21-21,1573-1573[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	UGAAGAAGAGAGUGAAAGCGAU&UUUUCUUUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7021_c0_g1_1584_TPlot.pdf
TRINITY_DN7021_c0_g1:3312	si_s86	TRINITY_DN7021_c0_g1	3296	3321	3312	-32.90	-25.20	0.765957446808511	8.5	3-15,3319-3307;16-21,3301-3296	1-2,3321-3320[UP5];x-x,3306-3302[BULt]	((((((.....(((((((((((((..&..)))))))))))))-----))))))	AGCGAACUUUUGGAGAAGAAAGGAUU&UUUCCUUUCUUCUUC-----UUCGCU	3	0.994608416506337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7021_c0_g1_3312_TPlot.pdf
TRINITY_DN7021_c0_g1:3318	si_s80	TRINITY_DN7021_c0_g1	3307	3327	3318	-28.20	-19.30	0.684397163120567	15.5	9-21,3319-3307	1-8,3327-3320[UP5]	(((((((((((((........&........)))))))))))))	GGAGAAGAAAGGAUUUUAUUA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7021_c0_g1_3318_TPlot.pdf
TRINITY_DN7021_c0_g1:3319	si_s79	TRINITY_DN7021_c0_g1	3308	3328	3319	-26.20	-17.20	0.656488549618321	17.5	10-21,3319-3308	1-9,3328-3320[UP5]	((((((((((((.........&.........))))))))))))	GAGAAGAAAGGAUUUUAUUAC&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7021_c0_g1_3319_TPlot.pdf
TRINITY_DN70227_c0_g1:17	si_s83	TRINITY_DN70227_c0_g1	6	26	17	-30.90	-21.80	0.705501618122977	6	1-6,26-21;9-21,18-6	7-8,20-19[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAAGAAGAAGAAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN70227_c0_g1_17_TPlot.pdf
TRINITY_DN7022_c0_g1:1486	si_a176	TRINITY_DN7022_c0_g1	1475	1495	1486	-31.70	-20.70	0.652996845425867	11	2-12,1494-1484	1-1,1495-1495[UP5];13-21,1483-1475[UP3]	.........(((((((((((.&.))))))))))).........	GAAAUCGCCGUCUAGACGGGG&ACCCGUCUAGAUAAUAUCUUU	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a176_TRINITY_DN7022_c0_g1_1486_TPlot.pdf
TRINITY_DN7022_c0_g1:1501	si_a326	TRINITY_DN7022_c0_g1	1489	1510	1501	-26.20	-17.50	0.66793893129771	11.5	4-12,1507-1499;13-21,1497-1489	1-3,1510-1508[UP5];x-x,1498-1498[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	GACGGGGGACUGAGAAAGUAUG&AUGAUUUUUUUA-UUCCUUGUC	4	0.999999996483306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN7022_c0_g1_1501_TPlot.pdf
TRINITY_DN7022_c0_g1:3380	si_a50	TRINITY_DN7022_c0_g1	3367	3390	3380	-41.50	-27.00	0.650602409638554	10	1-6,3390-3385;7-11,3383-3379;12-16,3377-3373;17-20,3371-3368	x-x,3384-3384[BULt];x-x,3378-3378[BULt];x-x,3372-3372[BULt];21-21,3367-3367[UP3]	.((((.(((((.(((((.((((((&))))))-)))))-)))))-)))).	UGGCGCGGUCGAAUUCCUUGGGCC&GGUCUA-GGAGU-CGACU-CGCUU	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a50_TRINITY_DN7022_c0_g1_3380_TPlot.pdf
TRINITY_DN7022_c0_g1:3408	si_s164	TRINITY_DN7022_c0_g1	3398	3417	3408	-40.20	-26.30	0.654228855721393	7	1-12,3417-3406;14-14,3404-3404;18-20,3401-3399	13-13,3405-3405[SIL];15-17,3403-3402[AILq];21-21,3398-3398[UP3]	.(((..-(.((((((((((((&)))))))))))).)...))).	UGUCAA-GGCCCUGGCCGUGA&UCAUGGCCAGGGGUAAAGAUG	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s164_TRINITY_DN7022_c0_g1_3408_TPlot.pdf
TRINITY_DN7024_c0_g1:369	si_a409	TRINITY_DN7024_c0_g1	358	378	369	-19.50	-14.10	0.723076923076923	9.5	1-2,378-377;4-17,375-362	3-3,376-376[SIL];18-21,361-358[UP3]	....((((((((((((((.((&)).))))))))))))))....	ACAGUUGAAUAUAAGCAGUGC&GUUUUGUUUAUAUUUAAAUAA	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7024_c0_g1_369_TPlot.pdf
TRINITY_DN7024_c0_g1:371	si_a407	TRINITY_DN7024_c0_g1	360	380	371	-19.80	-15.80	0.797979797979798	7.5	1-4,380-377;6-19,375-362	5-5,376-376[SIL];20-21,361-360[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AGUUGAAUAUAAGCAGUGCAA&UUGUUUUGUUUAUAUUUAAAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN7024_c0_g1_371_TPlot.pdf
TRINITY_DN7025_c1_g1:2392	si_a466	TRINITY_DN7025_c1_g1	2381	2401	2392	-21.50	-14.40	0.669767441860465	8.5	1-15,2401-2387	16-21,2386-2381[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUCUGUUACAUGUUGUAUA&UAUAUAAUAUGUAAUUAUUGU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN7025_c1_g1_2392_TPlot.pdf
TRINITY_DN7025_c1_g1:2404	si_a454	TRINITY_DN7025_c1_g1	2393	2413	2404	-21.30	-16.90	0.793427230046948	6	3-21,2411-2393	1-2,2413-2412[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UGUUGUAUAUAAUAAUAAUAA&UAAUUGUUGUUAUAUAUAAUA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN7025_c1_g1_2404_TPlot.pdf
TRINITY_DN7025_c1_g1:2716	si_a817	TRINITY_DN7025_c1_g1	2705	2725	2716	-30.90	-21.00	0.679611650485437	7	1-14,2725-2712	15-21,2711-2705[UP3]	.......((((((((((((((&)))))))))))))).......	AUUGUUACUUUCUUCUUCUUC&GAAGAAGAAGAAAGGAAAGAA	4	0.996780650022867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN7025_c1_g1_2716_TPlot.pdf
TRINITY_DN7027_c0_g1:1248	si_a760	TRINITY_DN7027_c0_g1	1237	1257	1248	-31.10	-21.20	0.681672025723473	5	1-7,1257-1251;9-12,1249-1246;15-21,1243-1237	8-8,1250-1250[SIL];13-14,1245-1244[SIL]	(((((((..((((.(((((((&))))))).))))..)))))))	AUCAAUCUCAAAUGCAAAGGA&UCCUUUGGGUUUUUGAUUGAU	2	0.99811317359439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN7027_c0_g1_1248_TPlot.pdf
TRINITY_DN7027_c0_g1:1864	si_s365	TRINITY_DN7027_c0_g1	1853	1873	1864	-39.60	-26.20	0.661616161616162	7.5	1-2,1873-1872;4-9,1871-1866;11-21,1863-1853	3-3,x-x[BULq];10-10,1865-1864[AILt]	(((((((((((..((((((-((&)).))))))-.)))))))))))	CGCGAGUGAUCCUGUUCAG-CU&AGAUUGAAC-CGAUCGCUCGCG	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s365_TRINITY_DN7027_c0_g1_1864_TPlot.pdf
TRINITY_DN7030_c0_g2:251	si_a779	TRINITY_DN7030_c0_g2	239	260	251	-27.00	-19.20	0.711111111111111	8	3-13,258-248;14-20,246-240	1-2,260-259[UP5];x-x,247-247[BULt];21-21,239-239[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	UGAAAAAUAAGGAGGGUUGGCU&AUUCAACUCUUCU-AUUUUUCU	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN7030_c0_g2_251_TPlot.pdf
TRINITY_DN7030_c0_g2:252	si_a778	TRINITY_DN7030_c0_g2	240	261	252	-28.30	-18.80	0.664310954063604	9	4-14,258-248;15-21,246-240	1-3,261-259[UP5];x-x,247-247[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GAAAAAUAAGGAGGGUUGGCUU&GAUUCAACUCUUCU-AUUUUUC	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN7030_c0_g2_252_TPlot.pdf
TRINITY_DN70316_c0_g1:222	si_a25	TRINITY_DN70316_c0_g1	211	231	222	-26.50	-17.30	0.652830188679245	11	5-13,227-219;15-21,217-211	1-4,231-228[UP5];14-14,218-218[SIL]	(((((((.(((((((((....&....))))))))).)))))))	GGUCUUGCGACUAAGAGGAAU&UUUAUUUUUAGUUCUAAGACC	3	0.999797023763102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN70316_c0_g1_222_TPlot.pdf
TRINITY_DN7032_c0_g1:1832	si_a152	TRINITY_DN7032_c0_g1	1821	1841	1832	-29.20	-21.30	0.729452054794521	9	4-6,1838-1836;8-21,1834-1821	1-3,1841-1839[UP5];7-7,1835-1835[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UGGAUUGGCCUUGAUACACUU&UGUUGUUUUAAGGUCAAUCUA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN7032_c0_g1_1832_TPlot.pdf
TRINITY_DN7032_c0_g1:812	si_a81	TRINITY_DN7032_c0_g1	801	821	812	-23.00	-15.30	0.665217391304348	5.5	2-8,820-814;10-19,812-803	1-1,821-821[UP5];9-9,813-813[SIL];20-21,802-801[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	AGUUUCUUGAUAUUGAAAAAA&GUUUUUCAUUAUUAAGAAAAG	4	0.999419657208817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN7032_c0_g1_812_TPlot.pdf
TRINITY_DN7034_c0_g1:888	si_s27	TRINITY_DN7034_c0_g1	877	897	888	-27.00	-17.70	0.655555555555556	7.5	1-10,897-888;12-18,886-880	11-11,887-887[SIL];19-21,879-877[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AUCAGAUUUAAUUGCAGUCGG&UUGAUUGCAACUAAAUCUUUA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN7034_c0_g1_888_TPlot.pdf
TRINITY_DN7034_c0_g1:889	si_s26	TRINITY_DN7034_c0_g1	878	898	889	-26.70	-17.70	0.662921348314607	8	2-11,897-888;13-19,886-880	1-1,898-898[UP5];12-12,887-887[SIL];20-21,879-878[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	UCAGAUUUAAUUGCAGUCGGC&AUUGAUUGCAACUAAAUCUUU	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN7034_c0_g1_889_TPlot.pdf
TRINITY_DN7034_c0_g1:890	si_s25	TRINITY_DN7034_c0_g1	879	899	890	-27.10	-17.70	0.653136531365314	8	3-12,897-888;14-20,886-880	1-2,899-898[UP5];13-13,887-887[SIL];21-21,879-879[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CAGAUUUAAUUGCAGUCGGCU&UAUUGAUUGCAACUAAAUCUU	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN7034_c0_g1_890_TPlot.pdf
TRINITY_DN7036_c0_g1:747	si_a805	TRINITY_DN7036_c0_g1	735	756	747	-36.30	-24.00	0.661157024793388	6.5	1-15,756-742;18-19,738-737	16-17,741-739[AILt];20-21,736-735[UP3]	..((...(((((((((((((((&)))))))))))))))-..))..	AGCUGGAUUUGCUUUGGAUUGG&CCAAUCCGAAGCGAA-GAAGAA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a805_TRINITY_DN7036_c0_g1_747_TPlot.pdf
TRINITY_DN7039_c0_g1:511	si_a71	TRINITY_DN7039_c0_g1	500	520	511	-23.30	-15.60	0.669527896995708	8	1-7,520-514;10-14,511-507;16-21,505-500	8-9,513-512[SIL];15-15,506-506[SIL]	((((((.(((((..(((((((&)))))))..))))).))))))	UGAUGACAGAUAUGUUGAAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999999842549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN7039_c0_g1_511_TPlot.pdf
TRINITY_DN703_c0_g1:2102	si_a185	TRINITY_DN703_c0_g1	2083	2111	2102	-31.70	-20.70	0.652996845425867	10	1-13,2111-2099;14-15,2092-2091;16-21,2088-2083	x-x,2098-2093[BULt];x-x,2090-2089[BULt]	((((((..((......(((((((((((((&)))))))))))))------))--))))))	UGAACAUUGGCCAUUUGAAAGAUGUUGUC&GAUAAUAUCUUUC------CC--UGUUCA	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN703_c0_g1_2102_TPlot.pdf
TRINITY_DN7042_c0_g1:78	si_a785	TRINITY_DN7042_c0_g1	67	87	78	-25.90	-17.20	0.664092664092664	10	2-15,86-73;17-21,71-67	1-1,87-87[UP5];16-16,72-72[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	GAAAACGGGGGAGUGGGGGGA&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7042_c0_g1_78_TPlot.pdf
TRINITY_DN7044_c0_g2:635	si_s72	TRINITY_DN7044_c0_g2	623	644	635	-24.10	-16.10	0.66804979253112	7.5	1-4,644-641;6-18,639-627;19-20,625-624	5-5,640-640[SIL];x-x,626-626[BULt];21-21,623-623[UP3]	.((.(((((((((((((.((((&)))).)))))))))))))-)).	CGGCGAAAGAAAGAGAGAAGAA&UUCUAUUUUUUUUCUUUC-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7044_c0_g2_635_TPlot.pdf
TRINITY_DN7046_c0_g1:74	si_s800	TRINITY_DN7046_c0_g1	63	85	74	-29.70	-21.20	0.713804713804714	9	2-7,84-79;8-14,76-70;16-21,68-63	1-1,85-85[UP5];x-x,78-77[BULt];15-15,69-69[SIL]	((((((.(((((((..((((((.&.))))))--))))))).))))))	GGGUGAGGAAGAUAGUAGAUGCC&CGUAUUU--UAUCUUCGUUACCU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN7046_c0_g1_74_TPlot.pdf
TRINITY_DN7049_c0_g1:1540	si_a414	TRINITY_DN7049_c0_g1	1529	1549	1540	-18.10	-13.30	0.734806629834254	5.5	1-4,1549-1546;6-19,1544-1531	5-5,1545-1545[SIL];20-21,1530-1529[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	GCUAUUUGUUUGAAUAGAAAC&GUUUAUAUUUAAAUAAAUAUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN7049_c0_g1_1540_TPlot.pdf
TRINITY_DN7049_c0_g1:1542	si_a412	TRINITY_DN7049_c0_g1	1531	1551	1542	-18.30	-13.40	0.73224043715847	6.5	3-6,1549-1546;8-21,1544-1531	1-2,1551-1550[UP5];7-7,1545-1545[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	UAUUUGUUUGAAUAGAAACUU&UUGUUUAUAUUUAAAUAAAUA	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN7049_c0_g1_1542_TPlot.pdf
TRINITY_DN7049_c0_g1:1602	si_s406	TRINITY_DN7049_c0_g1	1591	1611	1602	-29.50	-20.30	0.688135593220339	4	1-15,1611-1597;17-21,1595-1591	16-16,1596-1596[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GGUGUUUCGUUUUUCGUUUUU&GAAGACGAAAAACGACAUAUU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s406_TRINITY_DN7049_c0_g1_1602_TPlot.pdf
TRINITY_DN7049_c0_g1:299	si_s414	TRINITY_DN7049_c0_g1	289	308	299	-24.90	-17.00	0.682730923694779	6	2-11,307-298;14-21,296-289	1-1,308-308[UP5];12-13,297-297[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	UUAUAUAGU-UGUGUUGUUUG&AAAACGACAUAUUCUAUAUAA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN7049_c0_g1_299_TPlot.pdf
TRINITY_DN7054_c0_g1:1056	si_a409	TRINITY_DN7054_c0_g1	1043	1065	1056	-19.50	-12.90	0.661538461538462	10.5	1-13,1065-1053;15-19,1049-1045	14-14,1052-1050[AILt];20-21,1044-1043[UP3]	..(((((...(((((((((((((&)))))))))))))--.)))))..	GAGUUUGUCCGUGUAGACGAAGC&GUUUUGUUUAUAU--UUAAAUAA	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7054_c0_g1_1056_TPlot.pdf
TRINITY_DN7054_c0_g1:1060	si_a405	TRINITY_DN7054_c0_g1	1049	1069	1060	-19.80	-13.10	0.661616161616162	15	5-17,1065-1053	1-4,1069-1066[UP5];18-21,1052-1049[UP3]	....(((((((((((((....&....)))))))))))))....	GUCCGUGUAGACGAAGCUUAC&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7054_c0_g1_1060_TPlot.pdf
TRINITY_DN7055_c0_g1:116	si_s773	TRINITY_DN7055_c0_g1	105	125	116	-23.10	-15.30	0.662337662337662	15.5	7-18,119-108	1-6,125-120[UP5];19-21,107-105[UP3]	...((((((((((((......&......))))))))))))...	ACCUGUAGCAGUAGUCAAGGA&UUAAUUACUAUUGCUAUAAAA	4	0.999998951818157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN7055_c0_g1_116_TPlot.pdf
TRINITY_DN70574_c0_g1:152	si_a73	TRINITY_DN70574_c0_g1	141	161	152	-21.90	-14.30	0.65296803652968	6.5	3-13,159-149;15-21,147-141	1-2,161-160[UP5];14-14,148-148[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GAUAAUGCAAGAUAAUUUGUA&UUCAAAUUGUUUUUCAUUAUU	2	0.999999997223997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN70574_c0_g1_152_TPlot.pdf
TRINITY_DN705_c0_g1:2321	si_a480	TRINITY_DN705_c0_g1	2310	2333	2321	-23.70	-16.20	0.683544303797468	10	1-7,2333-2327;8-19,2323-2312	x-x,2326-2324[BULt];20-21,2311-2310[UP3]	..((((((((((((...(((((((&)))))))---))))))))))))..	AAAUAUUCUAUGUAAAUGCAAUAA&UUAUUGU---UAUAUAGAAUAUGU	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN705_c0_g1_2321_TPlot.pdf
TRINITY_DN7060_c0_g1:374	si_s795	TRINITY_DN7060_c0_g1	360	383	374	-30.30	-20.30	0.66996699669967	10.5	3-6,381-378;8-17,376-367;18-21,363-360	1-2,383-382[UP5];7-7,377-377[SIL];x-x,366-364[BULt]	((((...((((((((((.((((..&..)))).))))))))))---))))	ACGAAAUGGAUAGAAUGAGAGCAU&AAGCUCGUAUUUUAUCU---UCGU	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN7060_c0_g1_374_TPlot.pdf
TRINITY_DN7060_c0_g1:433	si_s77	TRINITY_DN7060_c0_g1	423	442	433	-25.50	-16.70	0.654901960784314	4.5	1-13,442-430;15-20,429-424	14-14,x-x[BULq];21-21,423-423[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	AAAGAGA-GAAAGAAGGAAAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7060_c0_g1_433_TPlot.pdf
TRINITY_DN7060_c0_g1:435	si_s75	TRINITY_DN7060_c0_g1	425	444	435	-24.00	-15.80	0.658333333333333	6.5	3-15,442-430;17-21,429-425	1-2,444-443[UP5];16-16,x-x[BULq]	(((((-(((((((((((((..&..))))))))))))).)))))	AGAGA-GAAAGAAGGAAAAGC&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7060_c0_g1_435_TPlot.pdf
TRINITY_DN7063_c0_g1:1129	si_s78	TRINITY_DN7063_c0_g1	1116	1138	1129	-26.20	-19.40	0.740458015267176	5.5	1-10,1138-1129;11-18,1127-1120;19-21,1118-1116	x-x,1128-1128[BULt];x-x,1119-1119[BULt]	(((.((((((((.((((((((((&))))))))))-))))))))-)))	AGAUAGAAGGGACAAGAAAAGGA&UUUUUUUCUU-UCCUUUCU-UCU	3	0.999999999999781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7063_c0_g1_1129_TPlot.pdf
TRINITY_DN7063_c0_g1:1132	si_s75	TRINITY_DN7063_c0_g1	1120	1141	1132	-24.00	-18.50	0.770833333333333	6.5	3-13,1139-1129;14-21,1127-1120	1-2,1141-1140[UP5];x-x,1128-1128[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	AGAAGGGACAAGAAAAGGAAAA&UAUUUUUUUUCUU-UCCUUUCU	4	0.999999880015248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7063_c0_g1_1132_TPlot.pdf
TRINITY_DN7063_c0_g1:1317	si_a850	TRINITY_DN7063_c0_g1	1306	1326	1317	-29.00	-19.68	0.678620689655172	7	2-11,1325-1316;15-21,1312-1306	1-1,1326-1326[UP5];12-14,1315-1313[SIL]	(((((((...((((((((((.&.))))))))))...)))))))	AAUUGGAGACCAAGUUGGUAU&UUGCUAACUUGAAAUCCAAUU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN7063_c0_g1_1317_TPlot.pdf
TRINITY_DN7063_c0_g1:1642	si_a677	TRINITY_DN7063_c0_g1	1631	1650	1642	-35.40	-23.30	0.65819209039548	4.5	1-6,1650-1645;8-11,1644-1641;13-21,1639-1631	7-7,x-x[BULq];12-12,1640-1640[SIL]	(((((((((.((((-((((((&)))))).)))).)))))))))	CGAAAUCGCCUGAA-AAGGAA&UUCCUUAUUCACGCGGUUUCG	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN7063_c0_g1_1642_TPlot.pdf
TRINITY_DN7063_c0_g1:2307	si_a70	TRINITY_DN7063_c0_g1	2296	2316	2307	-23.90	-16.10	0.673640167364017	7	3-14,2314-2303;17-21,2300-2296	1-2,2316-2315[UP5];15-16,2302-2301[SIL]	(((((..((((((((((((..&..))))))))))))..)))))	GGUGAUCAACAAUUUGAAGAU&UCUUUCAAAUUGUUUUUCAUU	2	0.999997189631238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN7063_c0_g1_2307_TPlot.pdf
TRINITY_DN7063_c0_g1:2308	si_a69	TRINITY_DN7063_c0_g1	2297	2317	2308	-24.00	-15.80	0.658333333333333	8.5	4-15,2314-2303;18-21,2300-2297	1-3,2317-2315[UP5];16-17,2302-2301[SIL]	((((..((((((((((((...&...))))))))))))..))))	GUGAUCAACAAUUUGAAGAUU&UUCUUUCAAAUUGUUUUUCAU	4	0.999999999999917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN7063_c0_g1_2308_TPlot.pdf
TRINITY_DN7064_c0_g1:386	si_a634	TRINITY_DN7064_c0_g1	375	399	386	-26.40	-18.16	0.687878787878788	14.5	1-8,399-392;11-19,385-377	9-10,391-386[AILt];20-21,376-375[UP3]	..(((((((((......((((((((&))))))))----..)))))))))..	UGGCUCAAAAAUAAAUCUCGACAUA&UAUGUCGA----UUUUUUUGAGUAA	4	0.999993940316308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN7064_c0_g1_386_TPlot.pdf
TRINITY_DN7065_c0_g1:418	si_s675	TRINITY_DN7065_c0_g1	410	427	418	-27.50	-18.20	0.661818181818182	6	1-10,427-418;14-20,417-411	11-13,x-x[BULq];21-21,410-410[UP3]	.(((((((---((((((((((&))))))))))...))))))).	UACUCAUG---CUAUAAUCAA&UUGAUUAUAGAAACAUGAGUU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN7065_c0_g1_418_TPlot.pdf
TRINITY_DN7065_c0_g1:6246	si_s353	TRINITY_DN7065_c0_g1	6235	6255	6246	-26.90	-18.40	0.684014869888476	6	1-15,6255-6241	16-21,6240-6235[UP3]	......(((((((((((((((&)))))))))))))))......	ACCUUUUCUAUUUCUUUAUCU&AGAUAAAGAAAUAGAUUGAAC	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s353_TRINITY_DN7065_c0_g1_6246_TPlot.pdf
TRINITY_DN7067_c0_g1:2547	si_a814	TRINITY_DN7067_c0_g1	2534	2556	2547	-32.90	-22.46	0.682674772036474	6.5	2-13,2555-2544;17-21,2538-2534	1-1,2556-2556[UP5];14-16,2543-2539[AILt]	(((((.....((((((((((((.&.))))))))))))--...)))))	UUUCCAGAGGUUUCUUCUUCGCA&AGCGAAGAAGAAG--AAAGGAAA	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN7067_c0_g1_2547_TPlot.pdf
TRINITY_DN7067_c0_g1:3048	si_a628	TRINITY_DN7067_c0_g1	3037	3061	3048	-27.10	-17.88	0.659778597785978	13.5	1-4,3061-3058;6-21,3052-3037	5-5,3057-3053[AILt]	((((((((((((((((.....((((&))))----.))))))))))))))))	AGGAAGAUCGAUAUAGCAUUCACGC&GCGU----AUUAUGUCGAUUUUUUU	4	0.999999928384918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN7067_c0_g1_3048_TPlot.pdf
TRINITY_DN7067_c0_g1:646	si_s85	TRINITY_DN7067_c0_g1	635	655	646	-33.80	-22.70	0.671597633136095	11.5	6-21,650-635	1-5,655-651[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUGGGGAAGAAGAAGGUUCGA&CUUUCCUUUCUUCUUCUUCGC	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN7067_c0_g1_646_TPlot.pdf
TRINITY_DN70684_c0_g1:63	si_s81	TRINITY_DN70684_c0_g1	52	72	63	-28.90	-21.80	0.754325259515571	5	3-13,70-60;15-21,58-52	1-2,72-71[UP5];14-14,59-59[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AGAAGGAAGAAGGAAAGAAUU&UUUUCUUUCCUUUCUUCUUCU	4	0.99999997448701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN70684_c0_g1_63_TPlot.pdf
TRINITY_DN706_c0_g1:481	si_s76	TRINITY_DN706_c0_g1	470	490	481	-23.60	-15.60	0.661016949152542	13.5	6-11,485-480;13-20,478-471	1-5,490-486[UP5];12-12,479-479[SIL];21-21,470-470[UP3]	.((((((((.((((((.....&.....)))))).)))))))).	CAGAAGGGAUGGAAAACAAUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN706_c0_g1_481_TPlot.pdf
TRINITY_DN706_c0_g1:482	si_s75	TRINITY_DN706_c0_g1	471	496	482	-24.00	-16.30	0.679166666666667	14.5	1-7,496-490;8-12,484-480;14-21,478-471	x-x,489-485[BULt];13-13,479-479[SIL]	((((((((.(((((.....(((((((&)))))))-----))))).))))))))	AGAAGGGAUGGAAAACAAUGAAGAUA&UAUUUUU-----UUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN706_c0_g1_482_TPlot.pdf
TRINITY_DN706_c0_g1:567	si_s525	TRINITY_DN706_c0_g1	556	575	567	-24.00	-15.70	0.654166666666667	8	4-6,572-570;8-21,569-556	1-3,575-573[UP5];7-7,x-x[BULq]	((((((((((((((-(((...&...))).))))))))))))))	GUCAAGAAUGAUUU-GAACGU&UAAUUCGAAAUCAUUUUUGAU	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN706_c0_g1_567_TPlot.pdf
TRINITY_DN706_c0_g2:1331	si_a17	TRINITY_DN706_c0_g2	1321	1340	1331	-24.30	-16.90	0.695473251028807	5.5	2-10,1339-1331;12-18,1330-1324;20-21,1322-1321	1-1,1340-1340[UP5];11-11,x-x[BULq];19-19,1323-1323[SIL]	((.(((((((-(((((((((.&.))))))))).))))))).))	AAGUAAAAGU-AGUAGGCUUG&AAAGCCUAUUUAUUUUUAGUU	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN706_c0_g2_1331_TPlot.pdf
TRINITY_DN7070_c0_g1:273	si_s69	TRINITY_DN7070_c0_g1	262	282	273	-23.40	-15.90	0.67948717948718	7.5	3-16,280-267;18-21,265-262	1-2,282-281[UP5];17-17,266-266[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAAAAAGAAGAAAUGGGAGAC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7070_c0_g1_273_TPlot.pdf
TRINITY_DN7073_c0_g1:185	si_a638	TRINITY_DN7073_c0_g1	174	194	185	-24.40	-16.60	0.680327868852459	9	1-15,194-180	16-21,179-174[UP3]	......(((((((((((((((&)))))))))))))))......	AAUCGAACUCGAAAAAGUUGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN7073_c0_g1_185_TPlot.pdf
TRINITY_DN7074_c0_g1:2472	si_a506	TRINITY_DN7074_c0_g1	2461	2481	2472	-33.40	-26.60	0.796407185628743	5	1-13,2481-2469;16-19,2466-2463	14-15,2468-2467[SIL];20-21,2462-2461[UP3]	..((((..(((((((((((((&)))))))))))))..))))..	CAACAUGACGAGGAAGACGAA&UUCGUCUUCCUUGGAAUGUAA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN7074_c0_g1_2472_TPlot.pdf
TRINITY_DN7074_c0_g1:2692	si_s490	TRINITY_DN7074_c0_g1	2681	2701	2692	-17.80	-11.60	0.651685393258427	7.5	1-10,2701-2692;12-17,2690-2685	11-11,2691-2691[SIL];18-21,2684-2681[UP3]	....((((((.((((((((((&)))))))))).))))))....	CUUAGUUUGUUUUUGAAUAAA&UUUAUUUAAAUAUAAACAAAA	3	0.999985974189315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN7074_c0_g1_2692_TPlot.pdf
TRINITY_DN7075_c0_g1:2046	si_s689	TRINITY_DN7075_c0_g1	2035	2055	2046	-26.50	-17.28	0.652075471698113	10	2-9,2054-2047;13-20,2043-2036	1-1,2055-2055[UP5];10-12,2046-2044[SIL];21-21,2035-2035[UP3]	.((((((((...((((((((.&.))))))))...)))))))).	CAAUCGACUUGGUAGACUUAC&AUGAGUUUAAUUAGUCGAUUU	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN7075_c0_g1_2046_TPlot.pdf
TRINITY_DN7075_c0_g1:2074	si_s821	TRINITY_DN7075_c0_g1	2063	2083	2074	-22.20	-14.70	0.662162162162162	10	1-14,2083-2070	15-21,2069-2063[UP3]	.......((((((((((((((&)))))))))))))).......	UUCAGACUCGUUGUUAAGAGA&UUUCUUAAUAAUGAAAAACAA	2	0.849202080901741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN7075_c0_g1_2074_TPlot.pdf
TRINITY_DN7075_c0_g1:2075	si_s820	TRINITY_DN7075_c0_g1	2064	2084	2075	-22.10	-15.60	0.705882352941176	8.5	1-15,2084-2070	16-21,2069-2064[UP3]	......(((((((((((((((&)))))))))))))))......	UCAGACUCGUUGUUAAGAGAA&UUUUCUUAAUAAUGAAAAACA	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN7075_c0_g1_2075_TPlot.pdf
TRINITY_DN7075_c0_g1:2076	si_s819	TRINITY_DN7075_c0_g1	2065	2085	2076	-23.00	-15.80	0.68695652173913	8.5	2-16,2084-2070	1-1,2085-2085[UP5];17-21,2069-2065[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CAGACUCGUUGUUAAGAGAAA&CUUUUCUUAAUAAUGAAAAAC	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN7075_c0_g1_2076_TPlot.pdf
TRINITY_DN7075_c0_g1:2077	si_s818	TRINITY_DN7075_c0_g1	2066	2087	2077	-23.70	-17.60	0.742616033755274	8.5	1-4,2087-2084;5-17,2082-2070	x-x,2083-2083[BULt];18-21,2069-2066[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	AGACUCGUUGUUAAGAGAAAGG&CCUU-UUCUUAAUAAUGAAAAA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN7075_c0_g1_2077_TPlot.pdf
TRINITY_DN7075_c0_g1:2078	si_s817	TRINITY_DN7075_c0_g1	2067	2088	2078	-24.50	-19.10	0.779591836734694	7	1-5,2088-2084;6-18,2082-2070	x-x,2083-2083[BULt];19-21,2069-2067[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	GACUCGUUGUUAAGAGAAAGGU&ACCUU-UUCUUAAUAAUGAAAA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN7075_c0_g1_2078_TPlot.pdf
TRINITY_DN7075_c0_g1:2079	si_s816	TRINITY_DN7075_c0_g1	2068	2089	2079	-24.90	-19.10	0.76706827309237	7	2-6,2088-2084;7-19,2082-2070	1-1,2089-2089[UP5];x-x,2083-2083[BULt];20-21,2069-2068[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	ACUCGUUGUUAAGAGAAAGGUC&UACCUU-UUCUUAAUAAUGAAA	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN7075_c0_g1_2079_TPlot.pdf
TRINITY_DN7075_c0_g1:2080	si_s815	TRINITY_DN7075_c0_g1	2069	2090	2080	-25.00	-19.10	0.764	8	3-7,2088-2084;8-20,2082-2070	1-2,2090-2089[UP5];x-x,2083-2083[BULt];21-21,2069-2069[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	CUCGUUGUUAAGAGAAAGGUCU&UUACCUU-UUCUUAAUAAUGAA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN7075_c0_g1_2080_TPlot.pdf
TRINITY_DN7075_c0_g1:2081	si_s814	TRINITY_DN7075_c0_g1	2070	2091	2081	-26.60	-18.80	0.706766917293233	9	4-8,2088-2084;9-21,2082-2070	1-3,2091-2089[UP5];x-x,2083-2083[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	UCGUUGUUAAGAGAAAGGUCUU&GUUACCUU-UUCUUAAUAAUGA	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN7075_c0_g1_2081_TPlot.pdf
TRINITY_DN7076_c0_g1:2013	si_a147	TRINITY_DN7076_c0_g1	2000	2022	2013	-30.40	-21.48	0.706578947368421	10	2-14,2021-2009;17-21,2004-2000	1-1,2022-2022[UP5];15-16,2008-2005[AILt]	(((((....(((((((((((((.&.)))))))))))))--..)))))	UGGCCGCCGAGAGCGAUAGCGAG&AUCGUUGUUGUUUU--AAGGUCA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN7076_c0_g1_2013_TPlot.pdf
TRINITY_DN7076_c0_g1:2271	si_s480	TRINITY_DN7076_c0_g1	2260	2280	2271	-25.00	-16.38	0.6552	11.5	1-7,2280-2274;11-18,2270-2263	8-10,2273-2271[SIL];19-21,2262-2260[UP3]	...((((((((...(((((((&)))))))...))))))))...	GACUGAAUAGGAUGAGGAUCC&GGAUCCUAUAUUUAUUUAAAU	2	0.995377114934657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN7076_c0_g1_2271_TPlot.pdf
TRINITY_DN7078_c0_g1:596	si_a447	TRINITY_DN7078_c0_g1	585	605	596	-25.70	-18.20	0.708171206225681	8	3-15,603-591;17-18,589-588	1-2,605-604[UP5];16-16,590-590[SIL];19-21,587-585[UP3]	...((.(((((((((((((..&..))))))))))))).))...	GGAGAGAGCAAUUAUCUCAGU&UAUGAGAUAAUUGUUGUUAUA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN7078_c0_g1_596_TPlot.pdf
TRINITY_DN7078_c0_g1:7603	si_a760	TRINITY_DN7078_c0_g1	7588	7612	7603	-31.10	-20.74	0.666881028938907	9.5	1-13,7612-7600;15-18,7595-7592;19-21,7590-7588	14-14,7599-7596[AILt];x-x,7591-7591[BULt]	(((.((((....(((((((((((((&)))))))))))))---.))))-)))	GUCGGAUCUGACGAGGCCCAAGGGA&UCCUUUGGGUUUU---UGAUU-GAU	4	0.9999998260223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN7078_c0_g1_7603_TPlot.pdf
TRINITY_DN7078_c0_g1:8712	si_s248	TRINITY_DN7078_c0_g1	8701	8721	8712	-31.90	-20.80	0.652037617554859	10	1-6,8721-8716;8-13,8714-8709	7-7,8715-8715[SIL];14-21,8708-8701[UP3]	........((((((.((((((&)))))).))))))........	CCUCGGUCCGGGAAUUGCCUA&UAGGCAUUUCCCGAUAUAUUA	4	0.998590147473855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN7078_c0_g1_8712_TPlot.pdf
TRINITY_DN7078_c0_g1:9057	si_a501	TRINITY_DN7078_c0_g1	9046	9066	9057	-33.50	-24.50	0.73134328358209	9.5	1-8,9066-9059;11-20,9056-9047	9-10,9058-9057[SIL];21-21,9046-9046[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	GUCCGAGGAGGCGGGAAGAUG&CGUUUUUCGUCUUCCUUGGAA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN7078_c0_g1_9057_TPlot.pdf
TRINITY_DN7078_c0_g1:9058	si_a500	TRINITY_DN7078_c0_g1	9047	9067	9058	-34.40	-24.30	0.706395348837209	9	2-9,9066-9059;12-21,9056-9047	1-1,9067-9067[UP5];10-11,9058-9057[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	UCCGAGGAGGCGGGAAGAUGC&UCGUUUUUCGUCUUCCUUGGA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN7078_c0_g1_9058_TPlot.pdf
TRINITY_DN7078_c0_g1:9282	si_a627	TRINITY_DN7078_c0_g1	9271	9292	9282	-29.50	-19.50	0.661016949152542	9.5	1-4,9292-9289;6-8,9287-9285;9-18,9283-9274	5-5,9288-9288[SIL];x-x,9284-9284[BULt];19-21,9273-9271[UP3]	...((((((((((.(((.((((&)))).)))-))))))))))...	CUCAGAUCGACGUCGAUCCGCC&GGCGUAUU-AUGUCGAUUUUUU	2	0.999560141918521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN7078_c0_g1_9282_TPlot.pdf
TRINITY_DN7078_c0_g1:9283	si_a626	TRINITY_DN7078_c0_g1	9272	9293	9283	-30.20	-19.70	0.652317880794702	9.5	2-5,9292-9289;7-9,9287-9285;10-19,9283-9274	1-1,9293-9293[UP5];6-6,9288-9288[SIL];x-x,9284-9284[BULt];20-21,9273-9272[UP3]	..((((((((((.(((.((((.&.)))).)))-))))))))))..	UCAGAUCGACGUCGAUCCGCCC&AGGCGUAUU-AUGUCGAUUUUU	2	0.999537689506999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN7078_c0_g1_9283_TPlot.pdf
TRINITY_DN7078_c0_g1:9286	si_a624	TRINITY_DN7078_c0_g1	9274	9296	9286	-32.30	-21.50	0.665634674922601	9	1-5,9296-9292;6-7,9290-9289;9-11,9287-9285;12-21,9283-9274	x-x,9291-9291[BULt];8-8,9288-9288[SIL];x-x,9284-9284[BULt]	((((((((((.(((.((.(((((&)))))-)).)))-))))))))))	AGAUCGACGUCGAUCCGCCCUGG&CUAGG-CGUAUU-AUGUCGAUUU	2	0.88532232327187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN7078_c0_g1_9286_TPlot.pdf
TRINITY_DN7078_c0_g1:9362	si_s369	TRINITY_DN7078_c0_g1	9350	9373	9362	-42.00	-27.80	0.661904761904762	8.5	1-8,9373-9366;9-17,9363-9355;19-20,9352-9351	x-x,9365-9364[BULt];18-18,9354-9353[AILt];21-21,9350-9350[UP3]	.((..(((((((((..((((((((&))))))))--)))))))))-.)).	AGCCUCGCGAGCGAAUUCGGUUUA&UGAACCGA--UCGCUCGCG-UGUC	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s369_TRINITY_DN7078_c0_g1_9362_TPlot.pdf
TRINITY_DN7078_c0_g1:9363	si_s368	TRINITY_DN7078_c0_g1	9352	9374	9363	-40.10	-27.80	0.693266832917706	8	2-9,9373-9366;10-18,9363-9355;20-20,9353-9353	1-1,9374-9374[UP5];x-x,9365-9364[BULt];19-19,9354-9354[SIL];21-21,9352-9352[UP3]	.(.(((((((((..((((((((.&.))))))))--))))))))).).	CCUCGCGAGCGAAUUCGGUUUAC&UUGAACCGA--UCGCUCGCGUGU	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN7078_c0_g1_9363_TPlot.pdf
TRINITY_DN7078_c0_g1:9366	si_s367	TRINITY_DN7078_c0_g1	9353	9375	9366	-39.40	-27.50	0.697969543147208	9	3-10,9373-9366;11-19,9363-9355;21-21,9353-9353	1-2,9375-9374[UP5];x-x,9365-9364[BULt];20-20,9354-9354[SIL]	(.(((((((((..((((((((..&..))))))))--))))))))).)	CUCGCGAGCGAAUUCGGUUUACC&AUUGAACCGA--UCGCUCGCGUG	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN7078_c0_g1_9366_TPlot.pdf
TRINITY_DN7078_c0_g1:9367	si_s366	TRINITY_DN7078_c0_g1	9354	9376	9367	-39.70	-27.40	0.690176322418136	11	4-11,9373-9366;12-20,9363-9355	1-3,9376-9374[UP5];x-x,9365-9364[BULt];21-21,9354-9354[UP3]	.(((((((((..((((((((...&...))))))))--))))))))).	UCGCGAGCGAAUUCGGUUUACCU&GAUUGAACCGA--UCGCUCGCGU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s366_TRINITY_DN7078_c0_g1_9367_TPlot.pdf
TRINITY_DN7078_c0_g1:9368	si_s365	TRINITY_DN7078_c0_g1	9355	9377	9368	-39.60	-27.20	0.686868686868687	12	5-12,9373-9366;13-21,9363-9355	1-4,9377-9374[UP5];x-x,9365-9364[BULt]	(((((((((..((((((((....&....))))))))--)))))))))	CGCGAGCGAAUUCGGUUUACCUG&AGAUUGAACCGA--UCGCUCGCG	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s365_TRINITY_DN7078_c0_g1_9368_TPlot.pdf
TRINITY_DN7078_c0_g1:9369	si_s364	TRINITY_DN7078_c0_g1	9356	9378	9369	-38.50	-25.40	0.65974025974026	12	6-13,9373-9366;14-21,9363-9356	1-5,9378-9374[UP5];x-x,9365-9364[BULt]	((((((((..((((((((.....&.....))))))))--))))))))	GCGAGCGAAUUCGGUUUACCUGC&UAGAUUGAACCGA--UCGCUCGC	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s364_TRINITY_DN7078_c0_g1_9369_TPlot.pdf
TRINITY_DN7078_c0_g1:9383	si_a637	TRINITY_DN7078_c0_g1	9372	9393	9383	-25.80	-17.90	0.693798449612403	12.5	1-6,9393-9388;7-17,9386-9376	x-x,9387-9387[BULt];18-21,9375-9372[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UACCUGCUCGGGGAACGUCGGC&GUCGAU-UUUUUUGAGUAAUAU	4	0.999983678376299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN7078_c0_g1_9383_TPlot.pdf
TRINITY_DN7078_c0_g1:9384	si_a636	TRINITY_DN7078_c0_g1	9373	9394	9384	-26.30	-18.00	0.684410646387833	12	2-7,9393-9388;8-18,9386-9376	1-1,9394-9394[UP5];x-x,9387-9387[BULt];19-21,9375-9373[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	ACCUGCUCGGGGAACGUCGGCG&UGUCGAU-UUUUUUGAGUAAUA	2	0.999311501258161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN7078_c0_g1_9384_TPlot.pdf
TRINITY_DN7078_c0_g1:9385	si_a635	TRINITY_DN7078_c0_g1	9374	9395	9385	-26.10	-18.00	0.689655172413793	12.5	3-8,9393-9388;9-19,9386-9376	1-2,9395-9394[UP5];x-x,9387-9387[BULt];20-21,9375-9374[UP3]	..(((((((((((.((((((..&..))))))-)))))))))))..	CCUGCUCGGGGAACGUCGGCGG&AUGUCGAU-UUUUUUGAGUAAU	4	0.999997655413421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN7078_c0_g1_9385_TPlot.pdf
TRINITY_DN7078_c0_g1:9386	si_a634	TRINITY_DN7078_c0_g1	9375	9396	9386	-26.40	-18.00	0.681818181818182	13	4-9,9393-9388;10-20,9386-9376	1-3,9396-9394[UP5];x-x,9387-9387[BULt];21-21,9375-9375[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	CUGCUCGGGGAACGUCGGCGGU&UAUGUCGAU-UUUUUUGAGUAA	2	0.999621165911964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN7078_c0_g1_9386_TPlot.pdf
TRINITY_DN7078_c0_g1:9388	si_a633	TRINITY_DN7078_c0_g1	9376	9397	9388	-26.40	-17.70	0.670454545454545	13.5	5-10,9393-9388;11-21,9386-9376	1-4,9397-9394[UP5];x-x,9387-9387[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	UGCUCGGGGAACGUCGGCGGUG&UUAUGUCGAU-UUUUUUGAGUA	2	0.999963954709493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN7078_c0_g1_9388_TPlot.pdf
TRINITY_DN7078_c0_g1:9390	si_a631	TRINITY_DN7078_c0_g1	9378	9400	9390	-25.70	-16.90	0.657587548638132	11	1-6,9400-9395;7-12,9393-9388;13-21,9386-9378	x-x,9394-9394[BULt];x-x,9387-9387[BULt]	(((((((((.((((((.((((((&))))))-))))))-)))))))))	CUCGGGGAACGUCGGCGGUGGUA&UAUUAU-GUCGAU-UUUUUUGAG	3	0.999999955325718	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN7078_c0_g1_9390_TPlot.pdf
TRINITY_DN7078_c0_g1:9391	si_a630	TRINITY_DN7078_c0_g1	9379	9401	9391	-25.80	-17.00	0.65891472868217	9.5	1-7,9401-9395;8-13,9393-9388;14-21,9386-9379	x-x,9394-9394[BULt];x-x,9387-9387[BULt]	((((((((.((((((.(((((((&)))))))-))))))-))))))))	UCGGGGAACGUCGGCGGUGGUAC&GUAUUAU-GUCGAU-UUUUUUGA	4	0.999999884867925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN7078_c0_g1_9391_TPlot.pdf
TRINITY_DN7078_c0_g1:9738	si_s297	TRINITY_DN7078_c0_g1	9727	9750	9738	-29.80	-19.40	0.651006711409396	12	2-5,9749-9746;6-16,9742-9732	1-1,9750-9750[UP5];x-x,9745-9743[BULt];17-21,9731-9727[UP3]	.....(((((((((((...((((.&.))))---))))))))))).....	GGAUGUCGCAAUUCCACGGAUCGC&UCGAU---UGGAAUUGCGAAAAUU	3	0.997291085911247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN7078_c0_g1_9738_TPlot.pdf
TRINITY_DN707_c0_g1:2748	si_a793	TRINITY_DN707_c0_g1	2737	2757	2748	-28.50	-20.00	0.701754385964912	8	5-18,2753-2740;20-21,2738-2737	1-4,2757-2754[UP5];19-19,2739-2739[SIL]	((.((((((((((((((....&....)))))))))))))).))	UCUGAUUGGAAAAUAGAUUGU&UUUUUCUAUUUUCCAAUCCGA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN707_c0_g1_2748_TPlot.pdf
TRINITY_DN707_c0_g1:2749	si_a792	TRINITY_DN707_c0_g1	2738	2758	2749	-27.60	-18.80	0.681159420289855	11	6-19,2753-2740	1-5,2758-2754[UP5];20-21,2739-2738[UP3]	..((((((((((((((.....&.....))))))))))))))..	CUGAUUGGAAAAUAGAUUGUG&AUUUUUCUAUUUUCCAAUCCG	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN707_c0_g1_2749_TPlot.pdf
TRINITY_DN707_c0_g1:2751	si_a790	TRINITY_DN707_c0_g1	2740	2760	2751	-25.80	-18.80	0.728682170542636	13	8-21,2753-2740	1-7,2760-2754[UP5]	((((((((((((((.......&.......))))))))))))))	GAUUGGAAAAUAGAUUGUGAA&CUAUUUUUCUAUUUUCCAAUC	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN707_c0_g1_2751_TPlot.pdf
TRINITY_DN7080_c0_g1:212	si_s810	TRINITY_DN7080_c0_g1	202	221	212	-27.90	-19.00	0.681003584229391	9.5	1-13,221-209;15-17,208-206	14-14,x-x[BULq];18-21,205-202[UP3]	....(((-(((((((((((((&))))))))))))).)))....	UGGCAAG-GGAGGUGGCGGAG&CUUCGUUACCUUUUCUUAAUA	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN7080_c0_g1_212_TPlot.pdf
TRINITY_DN7080_c0_g1:217	si_s805	TRINITY_DN7080_c0_g1	206	226	217	-28.60	-18.80	0.657342657342657	15.5	6-19,221-208	1-5,226-222[UP5];20-21,207-206[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAGGGAGGUGGCGGAGGAGCA&UUUAUCUUCGUUACCUUUUCU	2	0.999999929401356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN7080_c0_g1_217_TPlot.pdf
TRINITY_DN7080_c0_g1:219	si_s803	TRINITY_DN7080_c0_g1	208	228	219	-26.00	-18.60	0.715384615384615	16.5	8-21,221-208	1-7,228-222[UP5]	((((((((((((((.......&.......))))))))))))))	GGGAGGUGGCGGAGGAGCAAG&AUUUUAUCUUCGUUACCUUUU	4	0.999976817192693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN7080_c0_g1_219_TPlot.pdf
TRINITY_DN7080_c0_g1:220	si_s802	TRINITY_DN7080_c0_g1	209	229	220	-26.40	-18.30	0.693181818181818	18	9-21,221-209	1-8,229-222[UP5]	(((((((((((((........&........)))))))))))))	GGAGGUGGCGGAGGAGCAAGC&UAUUUUAUCUUCGUUACCUUU	3	0.999996313032064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN7080_c0_g1_220_TPlot.pdf
TRINITY_DN7080_c0_g1:227	si_s86	TRINITY_DN7080_c0_g1	215	237	227	-32.90	-23.60	0.717325227963526	8.5	3-8,235-230;9-11,228-226;12-21,224-215	1-2,237-236[UP5];x-x,229-229[BULt];x-x,225-225[BULt]	((((((((((.(((.((((((..&..))))))-)))-))))))))))	GGCGGAGGAGCAAGCAAAGGACA&UUUCCUUU-CUU-CUUCUUCGCU	4	0.999999926891251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7080_c0_g1_227_TPlot.pdf
TRINITY_DN7080_c0_g1:280	si_a399	TRINITY_DN7080_c0_g1	269	289	280	-22.60	-14.80	0.654867256637168	13.5	6-10,284-280;12-21,278-269	1-5,289-285[UP5];11-11,279-279[SIL]	((((((((((.(((((.....&.....))))).))))))))))	GUGAACAGAGGAAUUCAUUCC&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999993381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN7080_c0_g1_280_TPlot.pdf
TRINITY_DN7084_c0_g1:214	si_s775	TRINITY_DN7084_c0_g1	203	223	214	-25.00	-16.50	0.66	5.5	1-9,223-215;11-14,213-210;16-21,208-203	10-10,214-214[SIL];15-15,209-209[SIL]	((((((.((((.(((((((((&))))))))).)))).))))))	UGUUUUUUGGUUGUAGUAAUU&AAUUACUAUUGCUAUAAAACA	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN7084_c0_g1_214_TPlot.pdf
TRINITY_DN7086_c1_g1:652	si_s806	TRINITY_DN7086_c1_g1	640	661	652	-28.60	-19.80	0.692307692307692	10.5	3-12,659-650;13-19,648-642	1-2,661-660[UP5];x-x,649-649[BULt];20-21,641-640[UP3]	..(((((((.((((((((((..&..))))))))))-)))))))..	UUGAAGAGGAUGAUGAGGAUUA&UUAUCUUCGUUA-CCUUUUCUU	4	0.999999034889186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN7086_c1_g1_652_TPlot.pdf
TRINITY_DN708_c0_g1:1565	si_a539	TRINITY_DN708_c0_g1	1547	1573	1565	-32.70	-21.30	0.651376146788991	19	1-4,1573-1570;6-10,1569-1565;11-21,1557-1547	5-5,x-x[BULq];x-x,1564-1558[BULt]	(((((((((((.......(((((-((((&)))).)))))-------)))))))))))	GGAUGGGUUGAAAAAACUGCCGA-CGCU&AGCGAUCGGU-------UCAAUCUAUUU	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN708_c0_g1_1565_TPlot.pdf
TRINITY_DN708_c0_g1:1968	si_s899	TRINITY_DN708_c0_g1	1957	1977	1968	-28.30	-19.50	0.68904593639576	7.5	2-16,1976-1962	1-1,1977-1977[UP5];17-21,1961-1957[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUAUGAAUUGAAGAGAAGGG&GCUUUCUCUUCAAUUUCAAUU	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN708_c0_g1_1968_TPlot.pdf
TRINITY_DN708_c0_g1:1973	si_s894	TRINITY_DN708_c0_g1	1962	1982	1973	-29.10	-19.50	0.670103092783505	12.5	7-21,1976-1962	1-6,1982-1977[UP5]	(((((((((((((((......&......)))))))))))))))	GAAUUGAAGAGAAGGGGAGGA&AAUAGGCUUUCUCUUCAAUUU	3	0.999999796088195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN708_c0_g1_1973_TPlot.pdf
TRINITY_DN708_c0_g1:1974	si_s83	TRINITY_DN708_c0_g1	1964	1983	1974	-30.90	-21.60	0.699029126213592	7	1-13,1983-1971;15-18,1970-1967	14-14,x-x[BULq];19-21,1966-1964[UP3]	...((((-(((((((((((((&))))))))))))).))))...	AUUGAAG-AGAAGGGGAGGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN708_c0_g1_1974_TPlot.pdf
TRINITY_DN708_c0_g1:1977	si_s80	TRINITY_DN708_c0_g1	1967	1986	1977	-28.20	-23.00	0.815602836879433	5	2-16,1985-1971;18-21,1970-1967	1-1,1986-1986[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	GAAG-AGAAGGGGAGGAAAAU&UUUUUCUUUCCUUUCUUCUUC	4	0.997686175636404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN708_c0_g1_1977_TPlot.pdf
TRINITY_DN708_c0_g1:1979	si_s78	TRINITY_DN708_c0_g1	1968	1988	1979	-26.20	-19.70	0.751908396946565	10	4-19,1985-1970	1-3,1988-1986[UP5];20-21,1969-1968[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGAGAAGGGGAGGAAAAUAU&UUUUUUUCUUUCCUUUCUUCU	4	0.999999999988201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN708_c0_g1_1979_TPlot.pdf
TRINITY_DN708_c0_g1:1985	si_s72	TRINITY_DN708_c0_g1	1974	1997	1985	-24.10	-16.72	0.693775933609958	13.5	1-7,1997-1991;10-21,1985-1974	8-9,1990-1986[AILt]	((((((((((((.....(((((((&)))))))---..))))))))))))	AGGGGAGGAAAAUAUGCGAUAGGA&UUCUAUU---UUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN708_c0_g1_1985_TPlot.pdf
TRINITY_DN708_c0_g1:2072	si_a319	TRINITY_DN708_c0_g1	2060	2081	2072	-22.40	-15.10	0.674107142857143	6.5	1-10,2081-2072;12-21,2069-2060	11-11,2071-2070[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	AAUGAAGGAAAAUAUGGAUAAA&UUUAUCCAUG-AUUUUUUUAUU	3	0.999999999998013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN708_c0_g1_2072_TPlot.pdf
TRINITY_DN708_c0_g1:2073	si_a318	TRINITY_DN708_c0_g1	2061	2082	2073	-22.50	-15.50	0.688888888888889	6.5	1-11,2082-2072;13-21,2069-2061	12-12,2071-2070[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AUGAAGGAAAAUAUGGAUAAAU&AUUUAUCCAUG-AUUUUUUUAU	4	0.999999991631285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN708_c0_g1_2073_TPlot.pdf
TRINITY_DN708_c0_g1:597	si_s296	TRINITY_DN708_c0_g1	586	606	597	-31.60	-20.60	0.651898734177215	9.5	1-13,606-594;15-16,592-591	14-14,593-593[SIL];17-21,590-586[UP3]	.....((.(((((((((((((&))))))))))))).)).....	AAAACUGGAGUUCCAGUUGAC&GUCGAUUGGAAUUGCGAAAAU	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN708_c0_g1_597_TPlot.pdf
TRINITY_DN708_c0_g1:753	si_a574	TRINITY_DN708_c0_g1	742	762	753	-29.60	-19.50	0.658783783783784	6	1-5,762-758;8-13,755-750;15-20,748-743	6-7,757-756[SIL];14-14,749-749[SIL];21-21,742-742[UP3]	.((((((.((((((..(((((&)))))..)))))).)))))).	GUUGUUAGAAACAUUAGAUUC&GAAUCGUAUGUUUGUAACAAG	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a574_TRINITY_DN708_c0_g1_753_TPlot.pdf
TRINITY_DN708_c0_g1:754	si_a573	TRINITY_DN708_c0_g1	743	763	754	-28.70	-19.40	0.67595818815331	6	2-6,762-758;9-14,755-750;16-21,748-743	1-1,763-763[UP5];7-8,757-756[SIL];15-15,749-749[SIL]	((((((.((((((..(((((.&.)))))..)))))).))))))	UUGUUAGAAACAUUAGAUUCG&UGAAUCGUAUGUUUGUAACAA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN708_c0_g1_754_TPlot.pdf
TRINITY_DN7095_c0_g1:2208	si_s86	TRINITY_DN7095_c0_g1	2196	2218	2208	-32.90	-21.60	0.656534954407295	7	1-5,2218-2214;6-17,2212-2201;19-21,2198-2196	x-x,2213-2213[BULt];18-18,2200-2199[AILt]	(((..((((((((((((.(((((&)))))-))))))))))))-.)))	AGCAAGAGGAGAAGGAGUGGAAA&UUUCC-UUUCUUCUUCUU-CGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7095_c0_g1_2208_TPlot.pdf
TRINITY_DN7095_c0_g1:2214	si_a327	TRINITY_DN7095_c0_g1	2203	2222	2214	-28.40	-20.40	0.71830985915493	8	1-3,2222-2220;6-17,2218-2207;19-21,2205-2203	4-5,2219-2219[AILq];18-18,2206-2206[SIL]	(((.((((((((((((.-(((&)))..)))))))))))).)))	GGAGAAGGAGUGGAAAU-UCA&UGAUUUUUUUAUUCCUUGUCC	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN7095_c0_g1_2214_TPlot.pdf
TRINITY_DN7095_c0_g1:2217	si_s83	TRINITY_DN7095_c0_g1	2206	2230	2217	-30.90	-21.80	0.705501618122977	11.5	1-9,2230-2222;10-13,2217-2214;15-21,2212-2206	x-x,2221-2218[BULt];14-14,2213-2213[SIL]	(((((((.((((....(((((((((&)))))))))----)))).)))))))	GAAGGAGUGGAAAUUCAGGAAGGAG&UUCUUUCCU----UUCUUCUUCUUC	3	0.99999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7095_c0_g1_2217_TPlot.pdf
TRINITY_DN7095_c0_g1:2231	si_s73	TRINITY_DN7095_c0_g1	2220	2240	2231	-24.00	-16.90	0.704166666666667	10.5	1-8,2240-2233;11-19,2230-2222	9-10,2232-2231[SIL];20-21,2221-2220[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UCAGGAAGGAGUUGGAAUGGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7095_c0_g1_2231_TPlot.pdf
TRINITY_DN7095_c0_g1:2232	si_s72	TRINITY_DN7095_c0_g1	2221	2241	2232	-24.10	-17.80	0.738589211618257	9.5	1-9,2241-2233;12-20,2230-2222	10-11,2232-2231[SIL];21-21,2221-2221[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	CAGGAAGGAGUUGGAAUGGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999998999714606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7095_c0_g1_2232_TPlot.pdf
TRINITY_DN7095_c0_g1:2233	si_s71	TRINITY_DN7095_c0_g1	2222	2242	2233	-25.70	-20.70	0.805447470817121	8	1-10,2242-2233;13-21,2230-2222	11-12,2232-2231[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AGGAAGGAGUUGGAAUGGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN7095_c0_g1_2233_TPlot.pdf
TRINITY_DN7095_c0_g1:2558	si_s73	TRINITY_DN7095_c0_g1	2544	2567	2558	-24.00	-17.00	0.708333333333333	7	1-10,2567-2558;11-13,2555-2553;14-21,2551-2544	x-x,2557-2556[BULt];x-x,2552-2552[BULt]	((((((((.(((..((((((((((&))))))))))--)))-))))))))	AAAGGAAACGAAACAAGAGAUAGA&UCUAUUUUUU--UUC-UUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7095_c0_g1_2558_TPlot.pdf
TRINITY_DN7095_c0_g1:5282	si_s22	TRINITY_DN7095_c0_g1	5271	5291	5282	-26.70	-18.20	0.681647940074906	9	1-14,5291-5278	15-21,5277-5271[UP3]	.......((((((((((((((&)))))))))))))).......	UAUAACCUGCAAUCGGUAUAG&CUAUAUUGAUUGCAACUAAAU	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN7095_c0_g1_5282_TPlot.pdf
TRINITY_DN7095_c0_g1:5283	si_s21	TRINITY_DN7095_c0_g1	5272	5292	5283	-27.40	-19.70	0.718978102189781	8	1-15,5292-5278	16-21,5277-5272[UP3]	......(((((((((((((((&)))))))))))))))......	AUAACCUGCAAUCGGUAUAGU&ACUAUAUUGAUUGCAACUAAA	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN7095_c0_g1_5283_TPlot.pdf
TRINITY_DN7095_c0_g1:5286	si_s18	TRINITY_DN7095_c0_g1	5275	5295	5286	-27.50	-19.70	0.716363636363636	10	4-18,5292-5278	1-3,5295-5293[UP5];19-21,5277-5275[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACCUGCAAUCGGUAUAGUUAU&AUUACUAUAUUGAUUGCAACU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN7095_c0_g1_5286_TPlot.pdf
TRINITY_DN7095_c0_g1:5287	si_s17	TRINITY_DN7095_c0_g1	5276	5296	5287	-27.20	-20.20	0.742647058823529	6.5	1-3,5296-5294;5-19,5292-5278	4-4,5293-5293[SIL];20-21,5277-5276[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	CCUGCAAUCGGUAUAGUUAUG&UAUUACUAUAUUGAUUGCAAC	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN7095_c0_g1_5287_TPlot.pdf
TRINITY_DN7095_c0_g1:5396	si_a411	TRINITY_DN7095_c0_g1	5385	5405	5396	-17.90	-12.70	0.709497206703911	9.5	1-14,5405-5392	15-21,5391-5385[UP3]	.......((((((((((((((&)))))))))))))).......	UAUCCACUGAGUAUAAACAGA&UUUGUUUAUAUUUAAAUAAAU	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN7095_c0_g1_5396_TPlot.pdf
TRINITY_DN7095_c0_g1:5397	si_a410	TRINITY_DN7095_c0_g1	5386	5406	5397	-17.80	-13.40	0.752808988764045	8.5	1-15,5406-5392	16-21,5391-5386[UP3]	......(((((((((((((((&)))))))))))))))......	AUCCACUGAGUAUAAACAGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7095_c0_g1_5397_TPlot.pdf
TRINITY_DN7095_c0_g1:5404	si_a403	TRINITY_DN7095_c0_g1	5393	5413	5404	-22.00	-16.40	0.745454545454545	11	6-21,5408-5393	1-5,5413-5409[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGUAUAAACAGAACAUCAAC&AGAAUUGUUUUGUUUAUAUUU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7095_c0_g1_5404_TPlot.pdf
TRINITY_DN7095_c0_g1:5617	si_a399	TRINITY_DN7095_c0_g1	5606	5626	5617	-22.60	-14.70	0.650442477876106	8	2-15,5625-5612	1-1,5626-5626[UP5];16-21,5611-5606[UP3]	......((((((((((((((.&.))))))))))))))......	UUUUAAAAAACAGUUCUAUAC&AUAUAGAAUUGUUUUGUUUAU	4	0.999999999997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN7095_c0_g1_5617_TPlot.pdf
TRINITY_DN7095_c0_g1:5667	si_s67	TRINITY_DN7095_c0_g1	5656	5677	5667	-25.60	-18.20	0.7109375	9	1-7,5677-5671;9-21,5668-5656	8-8,5670-5669[AILt]	(((((((((((((..(((((((&)))))))-.)))))))))))))	AGGAGGAAGGAUGCAGAGUUGC&GCAACUU-CUAUUUUUUUUCUU	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN7095_c0_g1_5667_TPlot.pdf
TRINITY_DN7095_c0_g1:5668	si_s66	TRINITY_DN7095_c0_g1	5657	5678	5668	-26.30	-18.90	0.718631178707224	8.5	1-8,5678-5671;10-21,5668-5657	9-9,5670-5669[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	GGAGGAAGGAUGCAGAGUUGCU&AGCAACUU-CUAUUUUUUUUCU	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN7095_c0_g1_5668_TPlot.pdf
TRINITY_DN7095_c0_g1:5669	si_s65	TRINITY_DN7095_c0_g1	5658	5679	5669	-26.00	-18.60	0.715384615384615	8.5	1-9,5679-5671;11-21,5668-5658	10-10,5670-5669[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	GAGGAAGGAUGCAGAGUUGCUG&UAGCAACUU-CUAUUUUUUUUC	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN7095_c0_g1_5669_TPlot.pdf
TRINITY_DN7095_c0_g1:5850	si_a408	TRINITY_DN7095_c0_g1	5838	5859	5850	-20.10	-13.40	0.666666666666667	8.5	1-12,5859-5848;14-18,5845-5841	13-13,5847-5846[AILt];19-21,5840-5838[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	AAAUUAAGAGGUAAGCAAAACA&UGUUUUGUUUAU-AUUUAAAUA	3	0.999999999995535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN7095_c0_g1_5850_TPlot.pdf
TRINITY_DN7095_c0_g1:5855	si_a403	TRINITY_DN7095_c0_g1	5844	5864	5855	-22.00	-14.80	0.672727272727273	10	4-17,5861-5848	1-3,5864-5862[UP5];18-21,5847-5844[UP3]	....((((((((((((((...&...))))))))))))))....	AGAGGUAAGCAAAACAAUAAA&AGAAUUGUUUUGUUUAUAUUU	3	0.999999999987464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7095_c0_g1_5855_TPlot.pdf
TRINITY_DN7095_c0_g1:6526	si_s72	TRINITY_DN7095_c0_g1	6515	6542	6526	-24.10	-16.00	0.663900414937759	17.5	1-8,6542-6535;10-21,6526-6515	9-9,6534-6527[AILt]	((((((((((((........((((((((&))))))))-------.))))))))))))	GAGGAAAGAAAAUUACGUAUAAAUGGAA&UUCUAUUU-------UUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7095_c0_g1_6526_TPlot.pdf
TRINITY_DN7096_c0_g1:1009	si_s429	TRINITY_DN7096_c0_g1	997	1017	1009	-21.10	-13.80	0.654028436018957	6	1-8,1017-1010;10-16,1009-1003;17-21,1001-997	9-9,x-x[BULq];x-x,1002-1002[BULt]	(((((.(((((((-((((((((&)))))))).)))))))-)))))	AAUGUAGUAGUUG-UGUUAUGU&AUAUAACAAUAAUUAC-AUAUU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN7096_c0_g1_1009_TPlot.pdf
TRINITY_DN7096_c0_g1:288	si_a410	TRINITY_DN7096_c0_g1	279	297	288	-17.80	-11.60	0.651685393258427	5	2-11,296-287;14-21,286-279	1-1,297-297[UP5];12-13,x-x[BULq]	((((((((--((((((((((.&.))))))))))..))))))))	UUUAUUUA--UGUAAACAAAG&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7096_c0_g1_288_TPlot.pdf
TRINITY_DN7099_c1_g1:1637	si_a786	TRINITY_DN7099_c1_g1	1625	1646	1637	-26.60	-20.40	0.766917293233083	9	1-14,1646-1633;15-21,1631-1625	x-x,1632-1632[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GGGGAAUAAGGGGGAUGGGGGA&UCUUCUAUUUUUCU-AUUUUCC	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7099_c1_g1_1637_TPlot.pdf
TRINITY_DN7099_c1_g1:584	si_s238	TRINITY_DN7099_c1_g1	573	593	584	-33.40	-22.40	0.67065868263473	7.5	2-6,592-588;9-11,585-583;13-21,581-573	1-1,593-593[UP5];7-8,587-586[SIL];12-12,582-582[SIL]	(((((((((.(((..(((((.&.)))))..))).)))))))))	GGAAGUGCCAAUUAUUUCCUA&AAGGAAUCAAUAGGCAUUUCC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s238_TRINITY_DN7099_c1_g1_584_TPlot.pdf
TRINITY_DN709_c0_g1:2234	si_a764	TRINITY_DN709_c0_g1	2224	2243	2234	-28.90	-19.30	0.667820069204152	6.5	3-13,2241-2231;15-20,2230-2225	1-2,2243-2242[UP5];14-14,x-x[BULq];21-21,2224-2224[UP3]	.((((((-(((((((((((..&..))))))))))).)))))).	CUGGAUC-AUCAAAAACUCUU&UUGGGUUUUUGAUUGAUUCAA	2	0.99991701430951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN709_c0_g1_2234_TPlot.pdf
TRINITY_DN709_c0_g1:2235	si_a763	TRINITY_DN709_c0_g1	2225	2244	2235	-28.80	-19.00	0.659722222222222	7.5	4-14,2241-2231;16-21,2230-2225	1-3,2244-2242[UP5];15-15,x-x[BULq]	((((((-(((((((((((...&...))))))))))).))))))	UGGAUC-AUCAAAAACUCUUG&UUUGGGUUUUUGAUUGAUUCA	2	0.999997697081284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN709_c0_g1_2235_TPlot.pdf
TRINITY_DN709_c0_g1:2237	si_a761	TRINITY_DN709_c0_g1	2227	2246	2237	-30.10	-19.80	0.6578073089701	7.5	1-3,2246-2244;6-16,2241-2231;18-21,2230-2227	4-5,2243-2242[SIL];17-17,x-x[BULq]	((((-(((((((((((..(((&)))..))))))))))).))))	GAUC-AUCAAAAACUCUUGGG&CCUUUGGGUUUUUGAUUGAUU	3	0.999999999680214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN709_c0_g1_2237_TPlot.pdf
TRINITY_DN709_c0_g1:2266	si_s89	TRINITY_DN709_c0_g1	2255	2289	2266	-35.30	-23.30	0.660056657223796	32.5	1-7,2289-2283;8-21,2268-2255	x-x,2282-2269[BULt]	((((((((((((((..............(((((((&)))))))--------------))))))))))))))	UGGGGCGAAGAAGGAUAUCUUAGAUUGAGGAGAGG&CCUUUCU--------------UCUUCUUCGCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN709_c0_g1_2266_TPlot.pdf
TRINITY_DN709_c0_g1:2267	si_s88	TRINITY_DN709_c0_g1	2256	2285	2267	-34.80	-23.20	0.666666666666667	21	1-5,2285-2281;6-8,2278-2276;9-21,2268-2256	x-x,2280-2279[BULt];x-x,2275-2269[BULt]	(((((((((((((.......(((..(((((&)))))--)))-------)))))))))))))	GGGGCGAAGAAGGAUAUCUUAGAUUGAGGA&UCCUU--UCU-------UCUUCUUCGCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN709_c0_g1_2267_TPlot.pdf
TRINITY_DN709_c0_g1:2276	si_s86	TRINITY_DN709_c0_g1	2258	2287	2276	-32.90	-22.50	0.683890577507599	21.5	1-7,2287-2281;8-10,2278-2276;11-21,2268-2258	x-x,2280-2279[BULt];x-x,2275-2269[BULt]	(((((((((((.......(((..(((((((&)))))))--)))-------)))))))))))	GGCGAAGAAGGAUAUCUUAGAUUGAGGAGA&UUUCCUU--UCU-------UCUUCUUCGCU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN709_c0_g1_2276_TPlot.pdf
TRINITY_DN709_c0_g1:2277	si_s85	TRINITY_DN709_c0_g1	2259	2288	2277	-33.80	-24.40	0.72189349112426	21	1-8,2288-2281;9-11,2278-2276;12-21,2268-2259	x-x,2280-2279[BULt];x-x,2275-2269[BULt]	((((((((((.......(((..((((((((&))))))))--)))-------))))))))))	GCGAAGAAGGAUAUCUUAGAUUGAGGAGAG&CUUUCCUU--UCU-------UCUUCUUCGC	3	0.999991544621683	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN709_c0_g1_2277_TPlot.pdf
TRINITY_DN709_c0_g1:2278	si_s84	TRINITY_DN709_c0_g1	2260	2289	2278	-32.30	-21.30	0.659442724458204	21	1-9,2289-2281;10-12,2278-2276;13-21,2268-2260	x-x,2280-2279[BULt];x-x,2275-2269[BULt]	(((((((((.......(((..(((((((((&)))))))))--)))-------)))))))))	CGAAGAAGGAUAUCUUAGAUUGAGGAGAGG&UCUUUCCUU--UCU-------UCUUCUUCG	2	0.999999999999968	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN709_c0_g1_2278_TPlot.pdf
TRINITY_DN709_c0_g1:836	si_a762	TRINITY_DN709_c0_g1	825	845	836	-29.70	-19.90	0.67003367003367	6	1-6,845-840;9-13,837-833;16-21,830-825	7-8,839-838[SIL];14-15,832-831[SIL]	((((((..(((((..((((((&))))))..)))))..))))))	GAAUCACGCAAAAGACCAAAG&CUUUGGGUUUUUGAUUGAUUC	3	0.999999482553996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN709_c0_g1_836_TPlot.pdf
TRINITY_DN709_c0_g1:870	si_a679	TRINITY_DN709_c0_g1	858	878	870	-35.40	-23.30	0.65819209039548	8.5	1-2,878-877;5-10,875-870;11-20,868-859	3-4,876-876[AILq];x-x,869-869[BULt];21-21,858-858[UP3]	.((((((((((.((((((.-((&))..))))))-)))))))))).	AUCGAAACUGCUGUGGAUU-GG&CCUUAUUCAC-GCGGUUUCGAA	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a679_TRINITY_DN709_c0_g1_870_TPlot.pdf
TRINITY_DN709_c0_g1:871	si_a678	TRINITY_DN709_c0_g1	859	879	871	-36.30	-24.70	0.680440771349862	7.5	1-3,879-877;6-11,875-870;12-21,868-859	4-5,876-876[AILq];x-x,869-869[BULt]	((((((((((.((((((.-(((&)))..))))))-))))))))))	UCGAAACUGCUGUGGAUU-GGA&UCCUUAUUCAC-GCGGUUUCGA	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a678_TRINITY_DN709_c0_g1_871_TPlot.pdf
TRINITY_DN709_c0_g1:875	si_a799	TRINITY_DN709_c0_g1	864	884	875	-32.50	-21.20	0.652307692307692	8	3-14,882-871;16-19,869-866	1-2,884-883[UP5];15-15,870-870[SIL];20-21,865-864[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	ACUGCUGUGGAUUGGAGAACA&UAUUUUCCAAUCCGAAGCGAA	2	0.908339209520547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN709_c0_g1_875_TPlot.pdf
TRINITY_DN709_c0_g1:922	si_a630	TRINITY_DN709_c0_g1	911	931	922	-25.80	-17.40	0.674418604651163	7.5	1-7,931-925;10-21,922-911	8-9,924-923[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	UCAAGGAGAUUGUGGUAAUAC&GUAUUAUGUCGAUUUUUUUGA	4	0.999996152107084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN709_c0_g1_922_TPlot.pdf
TRINITY_DN70_c0_g1:10133	si_a756	TRINITY_DN70_c0_g1	10123	10142	10133	-33.10	-22.40	0.676737160120846	4.5	1-16,10142-10127;19-21,10125-10123	17-18,10126-10126[AILq]	(((.-((((((((((((((((&))))))))))))))))..)))	AUCC-GGAUCUAAAGGAGGUU&AACCUCCUUUGGGUUUUUGAU	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN70_c0_g1_10133_TPlot.pdf
TRINITY_DN70_c0_g1:10136	si_s607	TRINITY_DN70_c0_g1	10125	10145	10136	-27.60	-23.30	0.844202898550725	6	1-14,10145-10132;16-19,10130-10127	15-15,10131-10131[SIL];20-21,10126-10125[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	CCGGAUCUAAAGGAGGUUCGC&GCGAAUCUUUUUUAAAUCCAA	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN70_c0_g1_10136_TPlot.pdf
TRINITY_DN70_c0_g1:10333	si_s66	TRINITY_DN70_c0_g1	10322	10341	10333	-26.30	-17.20	0.653992395437262	7	2-4,10340-10338;6-10,10337-10333;12-20,10331-10323	1-1,10341-10341[UP5];5-5,x-x[BULq];11-11,10332-10332[SIL];21-21,10322-10322[UP3]	.(((((((((.(((((-(((.&.))).))))).))))))))).	CGAGAAAGAAAAGAAG-UGCA&AGCAACUUCUAUUUUUUUUCU	4	0.999999999925919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN70_c0_g1_10333_TPlot.pdf
TRINITY_DN70_c0_g1:11111	si_a398	TRINITY_DN70_c0_g1	11100	11120	11111	-22.40	-15.10	0.674107142857143	11	6-20,11115-11101	1-5,11120-11116[UP5];21-21,11100-11100[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGAUAAAACAAUUCUUAAAA&AAUAUAGAAUUGUUUUGUUUA	4	0.999999946359056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN70_c0_g1_11111_TPlot.pdf
TRINITY_DN70_c0_g1:11177	si_s893	TRINITY_DN70_c0_g1	11166	11186	11177	-29.10	-19.20	0.65979381443299	11.5	4-15,11183-11172	1-3,11186-11184[UP5];16-21,11171-11166[UP3]	......((((((((((((...&...))))))))))))......	GCACUUGGAGAAAGCCUAAAG&AAAUAGGCUUUCUCUUCAAUU	3	0.999999963512878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN70_c0_g1_11177_TPlot.pdf
TRINITY_DN70_c0_g1:11180	si_s890	TRINITY_DN70_c0_g1	11169	11189	11180	-29.50	-19.20	0.650847457627119	14.5	7-18,11183-11172	1-6,11189-11184[UP5];19-21,11171-11169[UP3]	...((((((((((((......&......))))))))))))...	CUUGGAGAAAGCCUAAAGAAA&AAUAAAUAGGCUUUCUCUUCA	3	0.999999069262624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN70_c0_g1_11180_TPlot.pdf
TRINITY_DN70_c0_g1:11181	si_s889	TRINITY_DN70_c0_g1	11170	11190	11181	-28.80	-19.20	0.666666666666667	15.5	8-19,11183-11172	1-7,11190-11184[UP5];20-21,11171-11170[UP3]	..((((((((((((.......&.......))))))))))))..	UUGGAGAAAGCCUAAAGAAAG&AAAUAAAUAGGCUUUCUCUUC	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN70_c0_g1_11181_TPlot.pdf
TRINITY_DN70_c0_g1:11182	si_s888	TRINITY_DN70_c0_g1	11171	11191	11182	-26.80	-19.20	0.716417910447761	16.5	9-20,11183-11172	1-8,11191-11184[UP5];21-21,11171-11171[UP3]	.((((((((((((........&........)))))))))))).	UGGAGAAAGCCUAAAGAAAGC&AAAAUAAAUAGGCUUUCUCUU	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN70_c0_g1_11182_TPlot.pdf
TRINITY_DN70_c0_g1:11183	si_s887	TRINITY_DN70_c0_g1	11172	11192	11183	-26.80	-19.20	0.716417910447761	17.5	10-21,11183-11172	1-9,11192-11184[UP5]	((((((((((((.........&.........))))))))))))	GGAGAAAGCCUAAAGAAAGCC&AAAAAUAAAUAGGCUUUCUCU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN70_c0_g1_11183_TPlot.pdf
TRINITY_DN70_c0_g1:11338	si_a146	TRINITY_DN70_c0_g1	11327	11346	11338	-29.70	-20.10	0.676767676767677	8	3-6,11344-11341;8-11,11340-11337;13-21,11335-11327	1-2,11346-11345[UP5];7-7,x-x[BULq];12-12,11336-11336[SIL]	(((((((((.((((-((((..&..)))).)))).)))))))))	GACCUUAAACCAAC-GCGAAA&AAUCGUUGUUGUUUUAAGGUC	3	0.999930580745155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN70_c0_g1_11338_TPlot.pdf
TRINITY_DN70_c0_g1:11713	si_s69	TRINITY_DN70_c0_g1	11702	11728	11713	-23.40	-15.50	0.662393162393162	18	3-7,11726-11722;8-21,11715-11702	1-2,11728-11727[UP5];x-x,11721-11716[BULt]	((((((((((((((......(((((..&..)))))------))))))))))))))	GAGAGAAAGGAAAUACUCAAAGAGGAA&AACUUCU------AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN70_c0_g1_11713_TPlot.pdf
TRINITY_DN70_c0_g1:11732	si_s74	TRINITY_DN70_c0_g1	11721	11741	11732	-25.00	-16.50	0.66	8.5	1-10,11741-11732;13-20,11729-11722	11-12,11731-11730[SIL];21-21,11721-11721[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAGAGGAAAUUGAGAAAGUAG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN70_c0_g1_11732_TPlot.pdf
TRINITY_DN70_c0_g1:11882	si_a68	TRINITY_DN70_c0_g1	11871	11891	11882	-25.40	-18.40	0.724409448818898	5	1-10,11891-11882;12-19,11880-11873	11-11,11881-11881[SIL];20-21,11872-11871[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	UUAAAGACGACUUGAAAGAAG&CUUCUUUCAAAUUGUUUUUCA	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN70_c0_g1_11882_TPlot.pdf
TRINITY_DN70_c0_g1:11884	si_a66	TRINITY_DN70_c0_g1	11873	11893	11884	-26.70	-18.60	0.696629213483146	5	3-12,11891-11882;14-21,11880-11873	1-2,11893-11892[UP5];13-13,11881-11881[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AAAGACGACUUGAAAGAAGAG&CGCUUCUUUCAAAUUGUUUUU	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN70_c0_g1_11884_TPlot.pdf
TRINITY_DN70_c0_g1:12002	si_a759	TRINITY_DN70_c0_g1	11991	12011	12002	-32.60	-22.90	0.702453987730061	8.5	1-7,12011-12005;9-16,12003-11996	8-8,12004-12004[SIL];17-21,11995-11991[UP3]	.....((((((((.(((((((&))))))).)))))))).....	AACCACAGAAACCGGAAGGAG&CUCCUUUGGGUUUUUGAUUGA	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN70_c0_g1_12002_TPlot.pdf
TRINITY_DN70_c0_g1:12006	si_a755	TRINITY_DN70_c0_g1	11995	12015	12006	-34.90	-23.30	0.667621776504298	11.5	5-11,12011-12005;13-20,12003-11996	1-4,12015-12012[UP5];12-12,12004-12004[SIL];21-21,11995-11995[UP3]	.((((((((.(((((((....&....))))))).)))))))).	ACAGAAACCGGAAGGAGAAAA&GAACCUCCUUUGGGUUUUUGA	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN70_c0_g1_12006_TPlot.pdf
TRINITY_DN70_c0_g1:12007	si_a754	TRINITY_DN70_c0_g1	11996	12016	12007	-34.60	-23.30	0.673410404624277	11.5	6-12,12011-12005;14-21,12003-11996	1-5,12016-12012[UP5];13-13,12004-12004[SIL]	((((((((.(((((((.....&.....))))))).))))))))	CAGAAACCGGAAGGAGAAAAA&UGAACCUCCUUUGGGUUUUUG	3	0.998794621763486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN70_c0_g1_12007_TPlot.pdf
TRINITY_DN70_c0_g1:12163	si_s69	TRINITY_DN70_c0_g1	12152	12172	12163	-23.40	-17.30	0.739316239316239	10.5	6-21,12167-12152	1-5,12172-12168[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAGAGAAAAGAAAUAGUCAAA&AACUUCUAUUUUUUUUCUUUC	3	0.999999999006427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN70_c0_g1_12163_TPlot.pdf
TRINITY_DN70_c0_g1:12302	si_s316	TRINITY_DN70_c0_g1	12291	12311	12302	-31.50	-20.70	0.657142857142857	10.5	4-16,12308-12296	1-3,12311-12309[UP5];17-21,12295-12291[UP3]	.....(((((((((((((...&...))))))))))))).....	UCAAAGACAAGAAGGACAUAG&UUCUGUCCUUCUUGUUACAAA	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN70_c0_g1_12302_TPlot.pdf
TRINITY_DN70_c0_g1:12303	si_s315	TRINITY_DN70_c0_g1	12292	12312	12303	-31.60	-20.70	0.65506329113924	11.5	5-17,12308-12296	1-4,12312-12309[UP5];18-21,12295-12292[UP3]	....(((((((((((((....&....)))))))))))))....	CAAAGACAAGAAGGACAUAGU&AUUCUGUCCUUCUUGUUACAA	3	0.999999532366031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN70_c0_g1_12303_TPlot.pdf
TRINITY_DN70_c0_g1:12304	si_s314	TRINITY_DN70_c0_g1	12293	12313	12304	-31.50	-21.70	0.688888888888889	6.5	1-4,12313-12310;6-18,12308-12296	5-5,12309-12309[SIL];19-21,12295-12293[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AAAGACAAGAAGGACAUAGUU&AAUUCUGUCCUUCUUGUUACA	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN70_c0_g1_12304_TPlot.pdf
TRINITY_DN70_c0_g1:12307	si_s311	TRINITY_DN70_c0_g1	12296	12316	12307	-30.60	-21.40	0.699346405228758	8.5	4-7,12313-12310;9-21,12308-12296	1-3,12316-12314[UP5];8-8,12309-12309[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GACAAGAAGGACAUAGUUAAA&GAAAAUUCUGUCCUUCUUGUU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN70_c0_g1_12307_TPlot.pdf
TRINITY_DN70_c0_g1:12809	si_s894	TRINITY_DN70_c0_g1	12798	12818	12809	-29.10	-19.20	0.65979381443299	13	5-16,12814-12803	1-4,12818-12815[UP5];17-21,12802-12798[UP3]	.....((((((((((((....&....)))))))))))).....	AUGCGGAAGAGAAAGCUCUUA&AAUAGGCUUUCUCUUCAAUUU	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN70_c0_g1_12809_TPlot.pdf
TRINITY_DN70_c0_g1:12810	si_s893	TRINITY_DN70_c0_g1	12799	12819	12810	-29.10	-19.20	0.65979381443299	14	6-17,12814-12803	1-5,12819-12815[UP5];18-21,12802-12799[UP3]	....((((((((((((.....&.....))))))))))))....	UGCGGAAGAGAAAGCUCUUAU&AAAUAGGCUUUCUCUUCAAUU	2	0.999976971908058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN70_c0_g1_12810_TPlot.pdf
TRINITY_DN70_c0_g1:12811	si_s892	TRINITY_DN70_c0_g1	12800	12820	12811	-29.50	-19.20	0.650847457627119	15	7-18,12814-12803	1-6,12820-12815[UP5];19-21,12802-12800[UP3]	...((((((((((((......&......))))))))))))...	GCGGAAGAGAAAGCUCUUAUA&UAAAUAGGCUUUCUCUUCAAU	3	0.999999950567046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN70_c0_g1_12811_TPlot.pdf
TRINITY_DN70_c0_g1:12813	si_s890	TRINITY_DN70_c0_g1	12802	12822	12813	-29.50	-19.20	0.650847457627119	17	9-20,12814-12803	1-8,12822-12815[UP5];21-21,12802-12802[UP3]	.((((((((((((........&........)))))))))))).	GGAAGAGAAAGCUCUUAUAAG&AAUAAAUAGGCUUUCUCUUCA	3	0.999999010985757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN70_c0_g1_12813_TPlot.pdf
TRINITY_DN70_c0_g1:12814	si_s889	TRINITY_DN70_c0_g1	12803	12823	12814	-28.80	-18.80	0.652777777777778	18	10-21,12814-12803	1-9,12823-12815[UP5]	((((((((((((.........&.........))))))))))))	GAAGAGAAAGCUCUUAUAAGU&AAAUAAAUAGGCUUUCUCUUC	3	0.999994126720142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN70_c0_g1_12814_TPlot.pdf
TRINITY_DN70_c0_g1:13273	si_s72	TRINITY_DN70_c0_g1	13262	13282	13273	-24.10	-15.80	0.655601659751037	7	2-17,13281-13266	1-1,13282-13282[UP5];18-21,13265-13262[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACCUAAAGAGAAAAAGUAGAU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN70_c0_g1_13273_TPlot.pdf
TRINITY_DN70_c0_g1:13276	si_s69	TRINITY_DN70_c0_g1	13265	13285	13276	-23.40	-15.80	0.675213675213675	9.5	5-20,13281-13266	1-4,13285-13282[UP5];21-21,13265-13265[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAAGAGAAAAAGUAGAUUUG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN70_c0_g1_13276_TPlot.pdf
TRINITY_DN70_c0_g1:14091	si_a756	TRINITY_DN70_c0_g1	14080	14100	14091	-33.10	-23.30	0.70392749244713	10.5	4-10,14097-14091;12-19,14089-14082	1-3,14100-14098[UP5];11-11,14090-14090[SIL];20-21,14081-14080[UP3]	..((((((((.(((((((...&...))))))).))))))))..	CACAGAAACCGGAAGGAGAAA&AACCUCCUUUGGGUUUUUGAU	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN70_c0_g1_14091_TPlot.pdf
TRINITY_DN70_c0_g1:14092	si_a755	TRINITY_DN70_c0_g1	14081	14101	14092	-34.90	-23.30	0.667621776504298	11.5	5-11,14097-14091;13-20,14089-14082	1-4,14101-14098[UP5];12-12,14090-14090[SIL];21-21,14081-14081[UP3]	.((((((((.(((((((....&....))))))).)))))))).	ACAGAAACCGGAAGGAGAAAA&GAACCUCCUUUGGGUUUUUGA	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN70_c0_g1_14092_TPlot.pdf
TRINITY_DN70_c0_g1:14093	si_a754	TRINITY_DN70_c0_g1	14082	14102	14093	-34.60	-23.30	0.673410404624277	11.5	6-12,14097-14091;14-21,14089-14082	1-5,14102-14098[UP5];13-13,14090-14090[SIL]	((((((((.(((((((.....&.....))))))).))))))))	CAGAAACCGGAAGGAGAAAAA&UGAACCUCCUUUGGGUUUUUG	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN70_c0_g1_14093_TPlot.pdf
TRINITY_DN70_c0_g1:14351	si_s74	TRINITY_DN70_c0_g1	14338	14360	14351	-25.00	-17.30	0.692	4	1-16,14360-14345;17-20,14342-14339	x-x,14344-14343[BULt];21-21,14338-14338[UP3]	.((((..((((((((((((((((&))))))))))))))))--)))).	UAAAGUUGAAAGAAAAGAAAUAG&CUAUUUUUUUUCUUUC--CUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN70_c0_g1_14351_TPlot.pdf
TRINITY_DN70_c0_g1:14352	si_s73	TRINITY_DN70_c0_g1	14339	14361	14352	-24.00	-17.30	0.720833333333333	4	2-17,14360-14345;18-21,14342-14339	1-1,14361-14361[UP5];x-x,14344-14343[BULt]	((((..((((((((((((((((.&.))))))))))))))))--))))	AAAGUUGAAAGAAAAGAAAUAGU&UCUAUUUUUUUUCUUUC--CUUU	3	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN70_c0_g1_14352_TPlot.pdf
TRINITY_DN70_c0_g1:14353	si_s72	TRINITY_DN70_c0_g1	14342	14362	14353	-24.10	-17.00	0.705394190871369	7	3-18,14360-14345	1-2,14362-14361[UP5];19-21,14344-14342[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUUGAAAGAAAAGAAAUAGUA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN70_c0_g1_14353_TPlot.pdf
TRINITY_DN70_c0_g1:14354	si_s71	TRINITY_DN70_c0_g1	14343	14363	14354	-25.70	-17.00	0.66147859922179	8	4-19,14360-14345	1-3,14363-14361[UP5];20-21,14344-14343[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGAAAGAAAAGAAAUAGUAA&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN70_c0_g1_14354_TPlot.pdf
TRINITY_DN70_c0_g1:14355	si_s70	TRINITY_DN70_c0_g1	14344	14364	14355	-25.80	-17.00	0.65891472868217	9	5-20,14360-14345	1-4,14364-14361[UP5];21-21,14344-14344[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGAAAGAAAAGAAAUAGUAAA&ACUUCUAUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN70_c0_g1_14355_TPlot.pdf
TRINITY_DN70_c0_g1:14356	si_s69	TRINITY_DN70_c0_g1	14345	14365	14356	-23.40	-17.00	0.726495726495727	10	6-21,14360-14345	1-5,14365-14361[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAAGAAAAGAAAUAGUAAAA&AACUUCUAUUUUUUUUCUUUC	2	0.99999988092552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN70_c0_g1_14356_TPlot.pdf
TRINITY_DN70_c0_g1:14711	si_s68	TRINITY_DN70_c0_g1	14699	14723	14711	-23.10	-15.30	0.662337662337662	7.5	1-8,14723-14716;9-15,14712-14706;16-21,14704-14699	x-x,14715-14713[BULt];x-x,14705-14705[BULt]	((((((.(((((((...((((((((&))))))))---)))))))-))))))	AAAGAACAAGAAAUGCAAGAAGUUG&CAACUUCU---AUUUUUU-UUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN70_c0_g1_14711_TPlot.pdf
TRINITY_DN70_c0_g1:14784	si_s808	TRINITY_DN70_c0_g1	14773	14794	14784	-28.60	-20.60	0.72027972027972	9	2-9,14793-14786;10-17,14784-14777	1-1,14794-14794[UP5];x-x,14785-14785[BULt];18-21,14776-14773[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	UAUUGAAAAGGUAAGCGAGGAA&AUCUUCGUU-ACCUUUUCUUAA	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN70_c0_g1_14784_TPlot.pdf
TRINITY_DN70_c0_g1:14786	si_s807	TRINITY_DN70_c0_g1	14774	14795	14786	-28.90	-20.60	0.71280276816609	10	3-10,14793-14786;11-18,14784-14777	1-2,14795-14794[UP5];x-x,14785-14785[BULt];19-21,14776-14774[UP3]	...((((((((.((((((((..&..))))))))-))))))))...	AUUGAAAAGGUAAGCGAGGAAA&UAUCUUCGUU-ACCUUUUCUUA	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN70_c0_g1_14786_TPlot.pdf
TRINITY_DN70_c0_g1:14940	si_s899	TRINITY_DN70_c0_g1	14929	14952	14940	-28.30	-19.90	0.703180212014134	11.5	1-6,14952-14947;7-17,14943-14933	x-x,14946-14944[BULt];18-21,14932-14929[UP3]	....(((((((((((...((((((&))))))---)))))))))))....	GGAGGAAGUUGAAGAAGUGGAAGC&GCUUUC---UCUUCAAUUUCAAUU	2	0.992006333570158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN70_c0_g1_14940_TPlot.pdf
TRINITY_DN70_c0_g1:14941	si_s898	TRINITY_DN70_c0_g1	14930	14953	14941	-30.70	-21.00	0.684039087947883	11	1-7,14953-14947;8-18,14943-14933	x-x,14946-14944[BULt];19-21,14932-14930[UP3]	...(((((((((((...(((((((&)))))))---)))))))))))...	GAGGAAGUUGAAGAAGUGGAAGCU&GGCUUUC---UCUUCAAUUUCAAU	2	0.997915632487503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN70_c0_g1_14941_TPlot.pdf
TRINITY_DN70_c0_g1:14942	si_s897	TRINITY_DN70_c0_g1	14931	14954	14942	-31.30	-21.00	0.670926517571885	11.5	2-8,14953-14947;9-19,14943-14933	1-1,14954-14954[UP5];x-x,14946-14944[BULt];20-21,14932-14931[UP3]	..(((((((((((...(((((((.&.)))))))---)))))))))))..	AGGAAGUUGAAGAAGUGGAAGCUG&AGGCUUUC---UCUUCAAUUUCAA	2	0.999170182561266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN70_c0_g1_14942_TPlot.pdf
TRINITY_DN70_c0_g1:14943	si_s896	TRINITY_DN70_c0_g1	14932	14955	14943	-31.60	-21.00	0.664556962025316	12.5	3-9,14953-14947;10-20,14943-14933	1-2,14955-14954[UP5];x-x,14946-14944[BULt];21-21,14932-14932[UP3]	.(((((((((((...(((((((..&..)))))))---))))))))))).	GGAAGUUGAAGAAGUGGAAGCUGG&UAGGCUUUC---UCUUCAAUUUCA	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN70_c0_g1_14943_TPlot.pdf
TRINITY_DN70_c0_g1:14944	si_s69	TRINITY_DN70_c0_g1	14932	14953	14944	-23.40	-17.10	0.730769230769231	9	3-15,14951-14939;17-21,14936-14932	1-2,14953-14952[UP5];16-16,14938-14937[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	GGAAGUUGAAGAAGUGGAAGCU&AACUUCUAUUUUUUU-UCUUUC	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN70_c0_g1_14944_TPlot.pdf
TRINITY_DN70_c0_g1:14945	si_s68	TRINITY_DN70_c0_g1	14933	14954	14945	-23.10	-16.00	0.692640692640693	7.5	1-2,14954-14953;4-16,14951-14939;18-21,14936-14933	3-3,14952-14952[SIL];17-17,14938-14937[AILt]	((((..(((((((((((((.((&)).)))))))))))))-.))))	GAAGUUGAAGAAGUGGAAGCUG&CAACUUCUAUUUUUUU-UCUUU	2	0.999999980890888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN70_c0_g1_14945_TPlot.pdf
TRINITY_DN70_c0_g1:14947	si_s895	TRINITY_DN70_c0_g1	14933	14956	14947	-31.10	-20.60	0.662379421221865	13.5	4-10,14953-14947;11-21,14943-14933	1-3,14956-14954[UP5];x-x,14946-14944[BULt]	(((((((((((...(((((((...&...)))))))---)))))))))))	GAAGUUGAAGAAGUGGAAGCUGGC&AUAGGCUUUC---UCUUCAAUUUC	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN70_c0_g1_14947_TPlot.pdf
TRINITY_DN70_c0_g1:15062	si_s74	TRINITY_DN70_c0_g1	15051	15071	15062	-25.00	-16.30	0.652	6	1-10,15071-15062;13-20,15059-15052	11-12,15061-15060[SIL];21-21,15051-15051[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	AAAAGGAAAUUGAAAAAAUAG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN70_c0_g1_15062_TPlot.pdf
TRINITY_DN70_c0_g1:15065	si_s71	TRINITY_DN70_c0_g1	15054	15074	15065	-25.70	-17.00	0.66147859922179	3.5	2-13,15073-15062;16-21,15059-15054	1-1,15074-15074[UP5];14-15,15061-15060[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	AGGAAAUUGAAAAAAUAGAAU&CUUCUAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN70_c0_g1_15065_TPlot.pdf
TRINITY_DN70_c0_g1:15473	si_a776	TRINITY_DN70_c0_g1	15461	15482	15473	-27.10	-19.90	0.734317343173432	7	1-10,15482-15473;11-16,15471-15466	x-x,15472-15472[BULt];17-21,15465-15461[UP3]	.....((((((.((((((((((&))))))))))-)))))).....	CCUAAAGAAGAGGUUGAAUCAA&UUGAUUCAAC-UCUUCUAUUUU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN70_c0_g1_15473_TPlot.pdf
TRINITY_DN70_c0_g1:15474	si_a775	TRINITY_DN70_c0_g1	15462	15483	15474	-27.20	-19.90	0.731617647058823	7	2-11,15482-15473;12-17,15471-15466	1-1,15483-15483[UP5];x-x,15472-15472[BULt];18-21,15465-15462[UP3]	....((((((.((((((((((.&.))))))))))-))))))....	CUAAAGAAGAGGUUGAAUCAAA&AUUGAUUCAAC-UCUUCUAUUU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN70_c0_g1_15474_TPlot.pdf
TRINITY_DN70_c0_g1:15475	si_a774	TRINITY_DN70_c0_g1	15463	15484	15475	-29.20	-19.90	0.681506849315068	8	3-12,15482-15473;13-18,15471-15466	1-2,15484-15483[UP5];x-x,15472-15472[BULt];19-21,15465-15463[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	UAAAGAAGAGGUUGAAUCAAAA&GAUUGAUUCAAC-UCUUCUAUU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN70_c0_g1_15475_TPlot.pdf
TRINITY_DN70_c0_g1:15476	si_a773	TRINITY_DN70_c0_g1	15464	15485	15476	-29.90	-19.90	0.665551839464883	8	4-13,15482-15473;14-19,15471-15466	1-3,15485-15483[UP5];x-x,15472-15472[BULt];20-21,15465-15464[UP3]	..((((((.((((((((((...&...))))))))))-))))))..	AAAGAAGAGGUUGAAUCAAAAG&UGAUUGAUUCAAC-UCUUCUAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a773_TRINITY_DN70_c0_g1_15476_TPlot.pdf
TRINITY_DN70_c0_g1:15477	si_a772	TRINITY_DN70_c0_g1	15465	15486	15477	-29.80	-19.90	0.667785234899329	9	5-14,15482-15473;15-20,15471-15466	1-4,15486-15483[UP5];x-x,15472-15472[BULt];21-21,15465-15465[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	AAGAAGAGGUUGAAUCAAAAGA&UUGAUUGAUUCAAC-UCUUCUA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a772_TRINITY_DN70_c0_g1_15477_TPlot.pdf
TRINITY_DN70_c0_g1:15478	si_a771	TRINITY_DN70_c0_g1	15466	15487	15478	-29.40	-20.40	0.693877551020408	6	1-3,15487-15485;6-15,15482-15473;16-21,15471-15466	4-5,15484-15483[SIL];x-x,15472-15472[BULt]	((((((.((((((((((..(((&)))..))))))))))-))))))	AGAAGAGGUUGAAUCAAAAGAA&UUUGAUUGAUUCAAC-UCUUCU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN70_c0_g1_15478_TPlot.pdf
TRINITY_DN70_c0_g1:15479	si_a770	TRINITY_DN70_c0_g1	15467	15488	15479	-28.70	-19.80	0.689895470383275	6	1-4,15488-15485;7-16,15482-15473;17-21,15471-15467	5-6,15484-15483[SIL];x-x,15472-15472[BULt]	(((((.((((((((((..((((&))))..))))))))))-)))))	GAAGAGGUUGAAUCAAAAGAAA&UUUUGAUUGAUUCAAC-UCUUC	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN70_c0_g1_15479_TPlot.pdf
TRINITY_DN70_c0_g1:16006	si_s80	TRINITY_DN70_c0_g1	15978	16015	16006	-28.20	-18.60	0.659574468085106	18.5	1-13,16015-16003;14-21,15985-15978	x-x,16002-15986[BULt]	((((((((.................(((((((((((((&)))))))))))))-----------------))))))))	GGAGAAGAACACCUAAAGAAAAACCAAGGAAAGAAGAA&UUUUUCUUUCCUU-----------------UCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN70_c0_g1_16006_TPlot.pdf
TRINITY_DN70_c0_g1:16011	si_s75	TRINITY_DN70_c0_g1	16000	16020	16011	-24.00	-17.80	0.741666666666667	8	3-18,16018-16003	1-2,16020-16019[UP5];19-21,16002-16000[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACCAAGGAAAGAAGAAGAAAU&UAUUUUUUUUCUUUCCUUUCU	4	0.99999999999921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN70_c0_g1_16011_TPlot.pdf
TRINITY_DN70_c0_g1:16013	si_s73	TRINITY_DN70_c0_g1	16002	16026	16013	-24.00	-19.50	0.8125	12	1-5,16026-16022;6-20,16017-16003	x-x,16021-16018[BULt];21-21,16002-16002[UP3]	.(((((((((((((((....(((((&)))))----))))))))))))))).	CAAGGAAAGAAGAAGAAAUAGUAGA&UCUAU----UUUUUUUCUUUCCUUU	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN70_c0_g1_16013_TPlot.pdf
TRINITY_DN70_c0_g1:16014	si_s72	TRINITY_DN70_c0_g1	16003	16027	16014	-24.10	-20.40	0.846473029045643	11	1-6,16027-16022;7-21,16017-16003	x-x,16021-16018[BULt]	(((((((((((((((....((((((&))))))----)))))))))))))))	AAGGAAAGAAGAAGAAAUAGUAGAA&UUCUAU----UUUUUUUCUUUCCUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN70_c0_g1_16014_TPlot.pdf
TRINITY_DN70_c0_g1:16015	si_s71	TRINITY_DN70_c0_g1	16004	16028	16015	-25.70	-19.80	0.770428015564202	12	2-7,16027-16022;8-21,16017-16004	1-1,16028-16028[UP5];x-x,16021-16018[BULt]	((((((((((((((....((((((.&.))))))----))))))))))))))	AGGAAAGAAGAAGAAAUAGUAGAAA&CUUCUAU----UUUUUUUCUUUCCU	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN70_c0_g1_16015_TPlot.pdf
TRINITY_DN70_c0_g1:16016	si_s70	TRINITY_DN70_c0_g1	16005	16029	16016	-25.80	-18.50	0.717054263565891	13.5	3-8,16027-16022;9-21,16017-16005	1-2,16029-16028[UP5];x-x,16021-16018[BULt]	(((((((((((((....((((((..&..))))))----)))))))))))))	GGAAAGAAGAAGAAAUAGUAGAAAU&ACUUCUAU----UUUUUUUCUUUCC	3	0.999999990973786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN70_c0_g1_16016_TPlot.pdf
TRINITY_DN70_c0_g1:16067	si_s82	TRINITY_DN70_c0_g1	16056	16076	16067	-28.90	-19.50	0.674740484429066	9	3-8,16074-16069;10-19,16067-16058	1-2,16076-16075[UP5];9-9,16068-16068[SIL];20-21,16057-16056[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	CUGAAGAAGAGAUGGAAGAUA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN70_c0_g1_16067_TPlot.pdf
TRINITY_DN70_c0_g1:16069	si_s80	TRINITY_DN70_c0_g1	16058	16078	16069	-28.20	-19.10	0.677304964539007	10.5	5-10,16074-16069;12-21,16067-16058	1-4,16078-16075[UP5];11-11,16068-16068[SIL]	((((((((((.((((((....&....)))))).))))))))))	GAAGAAGAGAUGGAAGAUAUU&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN70_c0_g1_16069_TPlot.pdf
TRINITY_DN70_c0_g1:16230	si_s84	TRINITY_DN70_c0_g1	16219	16239	16230	-32.30	-21.30	0.659442724458204	7	1-5,16239-16235;8-20,16232-16220	6-7,16234-16233[SIL];21-21,16219-16219[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	AGAAGAAGAAGAAGACGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN70_c0_g1_16230_TPlot.pdf
TRINITY_DN70_c0_g1:16232	si_s82	TRINITY_DN70_c0_g1	16221	16241	16232	-28.90	-19.60	0.678200692041523	7	1-7,16241-16235;10-21,16232-16221	8-9,16234-16233[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAAGAAGAAGACGAAGAGA&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN70_c0_g1_16232_TPlot.pdf
TRINITY_DN70_c0_g1:16233	si_s81	TRINITY_DN70_c0_g1	16222	16242	16233	-28.90	-19.60	0.678200692041523	7	1-8,16242-16235;11-21,16232-16222	9-10,16234-16233[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	AGAAGAAGAAGACGAAGAGAA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN70_c0_g1_16233_TPlot.pdf
TRINITY_DN70_c0_g1:16234	si_s80	TRINITY_DN70_c0_g1	16223	16243	16234	-28.20	-19.00	0.673758865248227	7	1-9,16243-16235;12-21,16232-16223	10-11,16234-16233[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	GAAGAAGAAGACGAAGAGAAA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN70_c0_g1_16234_TPlot.pdf
TRINITY_DN70_c0_g1:18234	si_a75	TRINITY_DN70_c0_g1	18224	18243	18234	-21.30	-14.30	0.671361502347418	8	1-13,18243-18231;15-18,18230-18227	14-14,x-x[BULq];19-21,18226-18224[UP3]	...((((-(((((((((((((&))))))))))))).))))...	CGCGUAG-GAGAAGCGAUUUG&CAAAUUGUUUUUCAUUAUUAA	4	0.99999999997982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN70_c0_g1_18234_TPlot.pdf
TRINITY_DN70_c0_g1:18966	si_a777	TRINITY_DN70_c0_g1	18955	18976	18966	-27.00	-18.30	0.677777777777778	9	1-9,18976-18968;10-15,18966-18961	x-x,18967-18967[BULt];16-21,18960-18955[UP3]	......((((((.(((((((((&)))))))))-))))))......	UACUGAAGAAGAUGUUGGAUCA&UGAUUCAAC-UCUUCUAUUUUU	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN70_c0_g1_18966_TPlot.pdf
TRINITY_DN70_c0_g1:18968	si_a776	TRINITY_DN70_c0_g1	18956	18977	18968	-27.10	-18.50	0.682656826568266	9	2-10,18976-18968;11-16,18966-18961	1-1,18977-18977[UP5];x-x,18967-18967[BULt];17-21,18960-18956[UP3]	.....((((((.(((((((((.&.)))))))))-)))))).....	ACUGAAGAAGAUGUUGGAUCAU&UUGAUUCAAC-UCUUCUAUUUU	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN70_c0_g1_18968_TPlot.pdf
TRINITY_DN70_c0_g1:18969	si_a775	TRINITY_DN70_c0_g1	18957	18978	18969	-27.20	-18.50	0.680147058823529	10	3-11,18976-18968;12-17,18966-18961	1-2,18978-18977[UP5];x-x,18967-18967[BULt];18-21,18960-18957[UP3]	....((((((.(((((((((..&..)))))))))-))))))....	CUGAAGAAGAUGUUGGAUCAUA&AUUGAUUCAAC-UCUUCUAUUU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN70_c0_g1_18969_TPlot.pdf
TRINITY_DN70_c0_g1:5028	si_a409	TRINITY_DN70_c0_g1	5017	5037	5028	-19.50	-12.80	0.656410256410256	10	1-3,5037-5035;5-16,5033-5022	4-4,5034-5034[SIL];17-21,5021-5017[UP3]	.....((((((((((((.(((&))).)))))))))))).....	CAUAAUAAAUAUGGACAUGAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN70_c0_g1_5028_TPlot.pdf
TRINITY_DN70_c0_g1:5031	si_a406	TRINITY_DN70_c0_g1	5020	5040	5031	-19.80	-13.00	0.656565656565657	12	4-6,5037-5035;8-19,5033-5022	1-3,5040-5038[UP5];7-7,5034-5034[SIL];20-21,5021-5020[UP3]	..((((((((((((.(((...&...))).))))))))))))..	AAUAAAUAUGGACAUGACUCA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN70_c0_g1_5031_TPlot.pdf
TRINITY_DN70_c0_g1:5178	si_s74	TRINITY_DN70_c0_g1	5167	5188	5178	-25.00	-16.40	0.656	4.5	1-8,5188-5181;9-16,5179-5172;18-21,5170-5167	x-x,5180-5180[BULt];17-17,5171-5171[SIL]	((((.((((((((.((((((((&))))))))-)))))))).))))	GAAAAGGAAGAAACAAAGAUAG&CUAUUUUU-UUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN70_c0_g1_5178_TPlot.pdf
TRINITY_DN70_c0_g1:5179	si_s73	TRINITY_DN70_c0_g1	5169	5189	5179	-24.00	-16.00	0.666666666666667	4.5	1-9,5189-5181;10-15,5179-5174;17-21,5173-5169	x-x,5180-5180[BULt];16-16,x-x[BULq]	(((((-((((((.(((((((((&)))))))))-)))))).)))))	AAAGG-AAGAAACAAAGAUAGG&UCUAUUUUU-UUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN70_c0_g1_5179_TPlot.pdf
TRINITY_DN70_c0_g1:6748	si_a326	TRINITY_DN70_c0_g1	6737	6757	6748	-26.20	-18.70	0.713740458015267	7	3-18,6755-6740	1-2,6757-6756[UP5];19-21,6739-6737[UP3]	...((((((((((((((((..&..))))))))))))))))...	CAAAAGGAAUGAAAAAAUCUG&AUGAUUUUUUUAUUCCUUGUC	4	0.998829180564054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN70_c0_g1_6748_TPlot.pdf
TRINITY_DN70_c0_g1:7311	si_s86	TRINITY_DN70_c0_g1	7299	7320	7311	-32.90	-22.50	0.683890577507599	9	3-5,7318-7316;7-19,7314-7302;20-20,7300-7300	1-2,7320-7319[UP5];6-6,7315-7315[SIL];x-x,7301-7301[BULt];21-21,7299-7299[UP3]	.(.(((((((((((((.(((..&..))).)))))))))))))-).	CGUCGAAGAAGGAGAAUGGGCA&UUUCCUUUCUUCUUCUUCG-CU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN70_c0_g1_7311_TPlot.pdf
TRINITY_DN70_c0_g1:7315	si_s82	TRINITY_DN70_c0_g1	7304	7325	7315	-28.90	-19.90	0.688581314878893	8.5	3-6,7323-7320;7-9,7318-7316;11-21,7314-7304	1-2,7325-7324[UP5];x-x,7319-7319[BULt];10-10,7315-7315[SIL]	(((((((((((.(((.((((..&..))))-))).)))))))))))	AAGAAGGAGAAUGGGCAAGAUU&UUUCUU-UCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN70_c0_g1_7315_TPlot.pdf
TRINITY_DN70_c0_g1:7426	si_a704	TRINITY_DN70_c0_g1	7415	7435	7426	-29.30	-19.50	0.665529010238908	10	3-14,7433-7422	1-2,7435-7434[UP5];15-21,7421-7415[UP3]	.......((((((((((((..&..)))))))))))).......	CAUACGAUGGAAUGUACCAUC&ACUGGUACAUUCCAAAAUAAU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN70_c0_g1_7426_TPlot.pdf
TRINITY_DN70_c0_g1:8506	si_s19	TRINITY_DN70_c0_g1	8496	8515	8506	-27.80	-18.20	0.654676258992806	6.5	1-12,8515-8504;14-17,8502-8499;19-21,8498-8496	13-13,8503-8503[SIL];18-18,x-x[BULq]	(((-((((.((((((((((((&)))))))))))).)))).)))	UGG-UGUAUUCAGUGUGGUAG&UUACUAUAUUGAUUGCAACUA	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN70_c0_g1_8506_TPlot.pdf
TRINITY_DN70_c0_g1:9130	si_s91	TRINITY_DN70_c0_g1	9112	9139	9130	-34.70	-23.70	0.682997118155619	11	1-7,9139-9133;9-13,9131-9127;14-21,9119-9112	8-8,9132-9132[SIL];x-x,9126-9120[BULt]	((((((((.......(((((.(((((((&))))))).)))))-------))))))))	UCCGAGGCAUUCCCUGAAGAUGAAGGAG&UUUCUUCUUCUUC-------GCUUCGGA	3	0.999999999281328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN70_c0_g1_9130_TPlot.pdf
TRINITY_DN70_c0_g1:9421	si_a405	TRINITY_DN70_c0_g1	9410	9430	9421	-19.80	-13.40	0.676767676767677	10	2-9,9429-9422;11-17,9420-9414	1-1,9430-9430[UP5];10-10,9421-9421[SIL];18-21,9413-9410[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	CAACGUAUGAAGAAGACAGUG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN70_c0_g1_9421_TPlot.pdf
TRINITY_DN70_c0_g1:9701	si_s6	TRINITY_DN70_c0_g1	9690	9710	9701	-21.70	-14.70	0.67741935483871	14.5	6-19,9705-9692	1-5,9710-9706[UP5];20-21,9691-9690[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUAGUGAUGGUGAGUUCCAA&AUAUUACUUAUUAUUACUAUA	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN70_c0_g1_9701_TPlot.pdf
TRINITY_DN70_c0_g1:9703	si_s4	TRINITY_DN70_c0_g1	9692	9712	9703	-21.60	-14.60	0.675925925925926	15.5	8-21,9705-9692	1-7,9712-9706[UP5]	((((((((((((((.......&.......))))))))))))))	UAGUGAUGGUGAGUUCCAAUG&UUAUAUUACUUAUUAUUACUA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN70_c0_g1_9703_TPlot.pdf
TRINITY_DN71018_c0_g1:13	si_a500	TRINITY_DN71018_c0_g1	2	21	13	-34.40	-23.70	0.688953488372093	8	1-2,21-20;4-20,19-3	3-3,x-x[BULq];21-21,2-2[UP3]	.(((((((((((((((((-((&)).))))))))))))))))).	GUCGAGGAAGACGAGGGG-GA&UCGUUUUUCGUCUUCCUUGGA	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN71018_c0_g1_13_TPlot.pdf
TRINITY_DN71018_c0_g1:224	si_s806	TRINITY_DN71018_c0_g1	213	233	224	-28.60	-19.30	0.674825174825175	9	1-14,233-220	15-21,219-213[UP3]	.......((((((((((((((&)))))))))))))).......	UAAUGACGGUAAUGAAGAUGA&UUAUCUUCGUUACCUUUUCUU	2	0.999997455977433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN71018_c0_g1_224_TPlot.pdf
TRINITY_DN71018_c0_g1:225	si_s805	TRINITY_DN71018_c0_g1	214	234	225	-28.60	-20.20	0.706293706293706	8	1-15,234-220	16-21,219-214[UP3]	......(((((((((((((((&)))))))))))))))......	AAUGACGGUAAUGAAGAUGAA&UUUAUCUUCGUUACCUUUUCU	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN71018_c0_g1_225_TPlot.pdf
TRINITY_DN71018_c0_g1:228	si_s802	TRINITY_DN71018_c0_g1	217	237	228	-26.40	-20.40	0.772727272727273	9.5	4-18,234-220	1-3,237-235[UP5];19-21,219-217[UP3]	...(((((((((((((((...&...)))))))))))))))...	GACGGUAAUGAAGAUGAAGAU&UAUUUUAUCUUCGUUACCUUU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN71018_c0_g1_228_TPlot.pdf
TRINITY_DN71018_c0_g1:230	si_s800	TRINITY_DN71018_c0_g1	219	243	230	-29.70	-21.30	0.717171717171717	11.5	2-5,242-239;6-20,234-220	1-1,243-243[UP5];x-x,238-235[BULt];21-21,219-219[UP3]	.(((((((((((((((....((((.&.))))----))))))))))))))).	CGGUAAUGAAGAUGAAGAUCAUACU&CGUAU----UUUAUCUUCGUUACCU	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN71018_c0_g1_230_TPlot.pdf
TRINITY_DN7101_c0_g1:1886	si_s740	TRINITY_DN7101_c0_g1	1875	1896	1886	-35.20	-23.42	0.665340909090909	13.5	2-6,1895-1891;10-18,1886-1878	1-1,1896-1896[UP5];7-9,1890-1887[AILt];19-21,1877-1875[UP3]	...(((((((((....(((((.&.)))))-...)))))))))...	CACGGUCGAUCUUCAGCGCCCU&CGGGUG-AAUAGAUUGACCUUA	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN7101_c0_g1_1886_TPlot.pdf
TRINITY_DN7101_c0_g1:1983	si_s795	TRINITY_DN7101_c0_g1	1971	1992	1983	-30.30	-20.30	0.66996699669967	7	2-13,1991-1980;15-17,1978-1976;19-21,1973-1971	1-1,1992-1992[UP5];14-14,1979-1979[SIL];18-18,1975-1974[AILt]	(((..(((.((((((((((((.&.)))))))))))).)))-.)))	GCGCUGGGAGGAAUACGAGCUC&AAGCUCGUAUUUUAUCU-UCGU	4	0.999943680976241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN7101_c0_g1_1983_TPlot.pdf
TRINITY_DN7101_c0_g1:2247	si_s709	TRINITY_DN7101_c0_g1	2235	2256	2247	-32.00	-21.40	0.66875	8.5	3-16,2254-2241;18-19,2238-2237	1-2,2256-2255[UP5];17-17,2240-2239[AILt];20-21,2236-2235[UP3]	..((..((((((((((((((..&..))))))))))))))-.))..	CGCUGAUCUCUGUUCACUGAAG&UAUUAGUGAACAGGGA-AAGAU	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s709_TRINITY_DN7101_c0_g1_2247_TPlot.pdf
TRINITY_DN7101_c0_g1:3787	si_a500	TRINITY_DN7101_c0_g1	3773	3796	3787	-34.40	-23.50	0.683139534883721	10.5	1-2,3796-3795;4-17,3793-3780;18-20,3776-3774	3-3,3794-3794[SIL];x-x,3779-3777[BULt];21-21,3773-3773[UP3]	.(((...((((((((((((((.((&)).))))))))))))))---))).	CCCAGUAGGGAGGAUGAGAGAGGG&UCGUUUUUCGUCUUCCU---UGGA	4	0.9999970577487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN7101_c0_g1_3787_TPlot.pdf
TRINITY_DN7101_c0_g1:3818	si_s311	TRINITY_DN7101_c0_g1	3807	3830	3818	-30.60	-20.20	0.660130718954248	13	1-2,3830-3829;5-9,3826-3822;10-21,3818-3807	3-4,3828-3827[SIL];x-x,3821-3819[BULt]	((((((((((((...(((((..((&))..)))))---))))))))))))	AGCAAGGAGGAUUGAAGAGUGAUC&GAAAAUUCU---GUCCUUCUUGUU	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN7101_c0_g1_3818_TPlot.pdf
TRINITY_DN7101_c0_g1:961	si_s90	TRINITY_DN7101_c0_g1	950	970	961	-35.30	-23.90	0.677053824362606	11.5	5-19,966-952	1-4,970-967[UP5];20-21,951-950[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGGAAGCGGAGGAGGAGCUGC&CUUUCUUCUUCUUCGCUUCGG	4	0.999999999961732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN7101_c0_g1_961_TPlot.pdf
TRINITY_DN7102_c0_g1:2696	si_a78	TRINITY_DN7102_c0_g1	2685	2704	2696	-22.30	-14.80	0.663677130044843	5	2-9,2703-2696;11-20,2695-2686	1-1,2704-2704[UP5];10-10,x-x[BULq];21-21,2685-2685[UP3]	.((((((((((-((((((((.&.)))))))).)))))))))).	AUCUUAAUAGU-AAAAACAAG&AUUGUUUUUCAUUAUUAAGAA	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN7102_c0_g1_2696_TPlot.pdf
TRINITY_DN7104_c0_g2:65	si_s679	TRINITY_DN7104_c0_g2	54	73	65	-25.20	-16.80	0.666666666666667	6.5	1-8,73-66;10-15,65-60;17-21,58-54	9-9,x-x[BULq];16-16,59-59[SIL]	(((((.((((((-((((((((&)))))))).)))))).)))))	AUUAGCCUCGUG-UUCUGUGA&UUAUAGAAACAUGAGUUUAAU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN7104_c0_g2_65_TPlot.pdf
TRINITY_DN7104_c0_g3:2042	si_a410	TRINITY_DN7104_c0_g3	2031	2051	2042	-17.80	-11.70	0.657303370786517	8	1-9,2051-2043;12-19,2040-2033	10-11,2042-2041[SIL];20-21,2032-2031[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AGUAUUUAAAGUUGAAUAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7104_c0_g3_2042_TPlot.pdf
TRINITY_DN7104_c1_g1:1316	si_s543	TRINITY_DN7104_c1_g1	1305	1325	1316	-28.80	-19.80	0.6875	7.5	1-16,1325-1310	17-21,1309-1305[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUGUGUUAUUUUGAUUGGGUC&GAUCCGAUCAAAAUAGAAUUA	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s543_TRINITY_DN7104_c1_g1_1316_TPlot.pdf
TRINITY_DN7104_c1_g1:1318	si_s541	TRINITY_DN7104_c1_g1	1307	1327	1318	-29.20	-20.00	0.684931506849315	8.5	3-18,1325-1310	1-2,1327-1326[UP5];19-21,1309-1307[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUGUUAUUUUGAUUGGGUCUG&UUGAUCCGAUCAAAAUAGAAU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s541_TRINITY_DN7104_c1_g1_1318_TPlot.pdf
TRINITY_DN7109_c0_g1:124	si_s125	TRINITY_DN7109_c0_g1	113	133	124	-27.20	-18.70	0.6875	11.5	6-21,128-113	1-5,133-129[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUGAUUUAGCUUUUCAAGAG&AAAUAGAAGAGUUGAAUCAAU	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN7109_c0_g1_124_TPlot.pdf
TRINITY_DN7109_c0_g1:1397	si_a548	TRINITY_DN7109_c0_g1	1385	1406	1397	-27.20	-18.20	0.669117647058823	9.5	5-14,1402-1393;15-21,1391-1385	1-4,1406-1403[UP5];x-x,1392-1392[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GGGAUAAUAGAAGUAGAUGGUU&UUCAAUCUAUUUCU-UUAUCUC	4	0.999660688822705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN7109_c0_g1_1397_TPlot.pdf
TRINITY_DN7113_c0_g1:2069	si_s806	TRINITY_DN7113_c0_g1	2057	2078	2069	-28.60	-21.70	0.758741258741259	7	1-8,2078-2071;10-12,2069-2067;13-20,2065-2058	9-9,2070-2070[SIL];x-x,2066-2066[BULt];21-21,2057-2057[UP3]	.((((((((.(((.((((((((&)))))))).)))-)))))))).	UAGAAAAGGCUGAGGAGGAUAA&UUAUCUUCGUUA-CCUUUUCUU	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN7113_c0_g1_2069_TPlot.pdf
TRINITY_DN7113_c0_g1:2072	si_s803	TRINITY_DN7113_c0_g1	2060	2081	2072	-26.00	-19.30	0.742307692307692	6.5	2-11,2080-2071;13-15,2069-2067;16-21,2065-2060	1-1,2081-2081[UP5];12-12,2070-2070[SIL];x-x,2066-2066[BULt]	((((((.(((.((((((((((.&.)))))))))).)))-))))))	AAAAGGCUGAGGAGGAUAAGAA&AUUUUAUCUUCGUUA-CCUUUU	4	0.996356176206815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN7113_c0_g1_2072_TPlot.pdf
TRINITY_DN7113_c0_g1:2073	si_s802	TRINITY_DN7113_c0_g1	2061	2082	2073	-26.40	-18.40	0.696969696969697	7.5	3-12,2080-2071;14-16,2069-2067;17-21,2065-2061	1-2,2082-2081[UP5];13-13,2070-2070[SIL];x-x,2066-2066[BULt]	(((((.(((.((((((((((..&..)))))))))).)))-)))))	AAAGGCUGAGGAGGAUAAGAAG&UAUUUUAUCUUCGUUA-CCUUU	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN7113_c0_g1_2073_TPlot.pdf
TRINITY_DN7113_c0_g1:2081	si_s74	TRINITY_DN7113_c0_g1	2069	2090	2081	-25.00	-17.30	0.692	7	1-4,2090-2087;6-14,2085-2077;15-20,2075-2070	5-5,2086-2086[SIL];x-x,2076-2076[BULt];21-21,2069-2069[UP3]	.((((((.(((((((((.((((&)))).)))))))))-)))))).	AGGAGGAUAAGAAGAGAUAUAG&CUAUUUUUUUUCUU-UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7113_c0_g1_2081_TPlot.pdf
TRINITY_DN7113_c0_g1:2084	si_s83	TRINITY_DN7113_c0_g1	2071	2097	2084	-30.90	-21.10	0.68284789644013	12.5	1-9,2097-2089;10-16,2084-2078;17-21,2075-2071	x-x,2088-2085[BULt];x-x,2077-2076[BULt]	(((((..(((((((....(((((((((&)))))))))----)))))))--)))))	GAGGAUAAGAAGAGAUAUAGGGAAGAA&UUCUUUCCU----UUCUUCU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7113_c0_g1_2084_TPlot.pdf
TRINITY_DN7113_c0_g1:2092	si_s79	TRINITY_DN7113_c0_g1	2077	2101	2092	-26.20	-17.40	0.66412213740458	12.5	5-13,2097-2089;14-21,2084-2077	1-4,2101-2098[UP5];x-x,2088-2085[BULt]	((((((((....(((((((((....&....)))))))))----))))))))	AAGAAGAGAUAUAGGGAAGAACUGA&UUUUUUCUUUCCU----UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7113_c0_g1_2092_TPlot.pdf
TRINITY_DN7113_c0_g1:2105	si_a19	TRINITY_DN7113_c0_g1	2094	2114	2105	-27.00	-19.06	0.705925925925926	10.5	2-7,2113-2108;12-21,2103-2094	1-1,2114-2114[UP5];8-11,2107-2104[SIL]	((((((((((....((((((.&.))))))....))))))))))	AGAACUGAAGCAGUAUAGGCA&AGCCUAUUUAUUUUUAGUUCU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN7113_c0_g1_2105_TPlot.pdf
TRINITY_DN7113_c0_g1:2106	si_a18	TRINITY_DN7113_c0_g1	2095	2115	2106	-26.30	-17.76	0.675285171102662	12	3-8,2113-2108;13-21,2103-2095	1-2,2115-2114[UP5];9-12,2107-2104[SIL]	(((((((((....((((((..&..))))))....)))))))))	GAACUGAAGCAGUAUAGGCAA&AAGCCUAUUUAUUUUUAGUUC	1	0.106494609766739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN7113_c0_g1_2106_TPlot.pdf
TRINITY_DN71156_c0_g1:46	si_a232	TRINITY_DN71156_c0_g1	35	55	46	-28.20	-18.50	0.656028368794326	7	2-17,54-39;19-19,37-37	1-1,55-55[UP5];18-18,38-38[SIL];20-21,36-35[UP3]	..(.((((((((((((((((.&.)))))))))))))))).)..	UUUGGAAUUGGUUAUGGAAGG&GUUUCUAUAAUCAAUUCGAUC	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN71156_c0_g1_46_TPlot.pdf
TRINITY_DN71156_c0_g1:47	si_a231	TRINITY_DN71156_c0_g1	36	56	47	-26.90	-19.20	0.713754646840149	7	1-1,56-56;3-18,54-39;20-20,37-37	2-2,55-55[SIL];19-19,38-38[SIL];21-21,36-36[UP3]	.(.((((((((((((((((.(&).)))))))))))))))).).	UUGGAAUUGGUUAUGGAAGGA&UGUUUCUAUAAUCAAUUCGAU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN71156_c0_g1_47_TPlot.pdf
TRINITY_DN71156_c0_g1:56	si_s79	TRINITY_DN71156_c0_g1	45	65	56	-26.20	-17.30	0.66030534351145	9.5	3-16,63-50	1-2,65-64[UP5];17-21,49-45[UP3]	.....((((((((((((((..&..)))))))))))))).....	GUUAUGGAAGGAAAGGAAACU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN71156_c0_g1_56_TPlot.pdf
TRINITY_DN7116_c0_g1:971	si_a468	TRINITY_DN7116_c0_g1	960	980	971	-21.30	-13.88	0.651643192488263	8.5	1-5,980-976;9-21,972-960	6-8,975-973[SIL]	(((((((((((((...(((((&)))))...)))))))))))))	UAACAAUGAUUAUUUUUUGUA&UAUAAUAUGUAAUUAUUGUUA	2	0.999180446586324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN7116_c0_g1_971_TPlot.pdf
TRINITY_DN7117_c0_g1:1756	si_s76	TRINITY_DN7117_c0_g1	1735	1765	1756	-23.60	-16.70	0.707627118644068	13	1-15,1765-1751;16-21,1740-1735	x-x,1750-1741[BULt]	((((((..........(((((((((((((((&)))))))))))))))----------))))))	GAGAGACUAAAAAUUUGGAAAGAGAAAGAAU&AUUUUUUUUCUUUCC----------UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7117_c0_g1_1756_TPlot.pdf
TRINITY_DN7117_c0_g1:1757	si_s75	TRINITY_DN7117_c0_g1	1746	1766	1757	-24.00	-16.70	0.695833333333333	8	2-16,1765-1751	1-1,1766-1766[UP5];17-21,1750-1746[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUUUGGAAAGAGAAAGAAUU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7117_c0_g1_1757_TPlot.pdf
TRINITY_DN7117_c0_g1:1758	si_s74	TRINITY_DN7117_c0_g1	1747	1767	1758	-25.00	-16.70	0.668	9	3-17,1765-1751	1-2,1767-1766[UP5];18-21,1750-1747[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUUUGGAAAGAGAAAGAAUUG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7117_c0_g1_1758_TPlot.pdf
TRINITY_DN7117_c0_g1:1759	si_s73	TRINITY_DN7117_c0_g1	1748	1768	1759	-24.00	-16.70	0.695833333333333	10	4-18,1765-1751	1-3,1768-1766[UP5];19-21,1750-1748[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUUGGAAAGAGAAAGAAUUGU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7117_c0_g1_1759_TPlot.pdf
TRINITY_DN711_c0_g1:4375	si_a467	TRINITY_DN711_c0_g1	4364	4384	4375	-21.10	-14.20	0.672985781990521	10.5	5-19,4380-4366	1-4,4384-4381[UP5];20-21,4365-4364[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUCGAUGGUUACAUAUUCCGA&AUAUAAUAUGUAAUUAUUGUU	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN711_c0_g1_4375_TPlot.pdf
TRINITY_DN7122_c0_g1:2211	si_a472	TRINITY_DN7122_c0_g1	2200	2220	2211	-21.50	-14.16	0.658604651162791	11	2-7,2219-2214;12-21,2209-2200	1-1,2220-2220[UP5];8-11,2213-2210[SIL]	((((((((((....((((((.&.))))))....))))))))))	UAUGUGACAAGCUGUACGUAA&AUAUGUAAUUAUUGUUAUAUA	4	0.999999568533045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN7122_c0_g1_2211_TPlot.pdf
TRINITY_DN7124_c0_g1:1997	si_a781	TRINITY_DN7124_c0_g1	1985	2006	1997	-27.40	-18.20	0.664233576642336	10	1-2,2006-2005;5-12,2002-1995;14-21,1992-1985	3-4,2004-2003[SIL];13-13,1994-1993[AILt]	((((((((..((((((((..((&))..))))))))-.))))))))	AUGGAAGAUCUGGAGGAGGAGA&UCAACUCUUCUA-UUUUUCUAU	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN7124_c0_g1_1997_TPlot.pdf
TRINITY_DN7124_c0_g1:2004	si_s79	TRINITY_DN7124_c0_g1	1986	2013	2004	-26.20	-20.40	0.778625954198473	11	1-14,2013-2000;15-20,1992-1987	x-x,1999-1993[BULt];21-21,1986-1986[UP3]	.((((((.......((((((((((((((&))))))))))))))-------)))))).	UGGAAGAUCUGGAGGAGGAGAGAAAAGA&UUUUUUCUUUCCUU-------UCUUCUU	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7124_c0_g1_2004_TPlot.pdf
TRINITY_DN7124_c0_g1:2011	si_s72	TRINITY_DN7124_c0_g1	2000	2020	2011	-24.10	-18.60	0.771784232365145	7	1-3,2020-2018;6-21,2015-2000	4-5,2017-2016[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	GAGGAGAGAAAAGAAGACGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999336734711078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7124_c0_g1_2011_TPlot.pdf
TRINITY_DN7130_c0_g1:1653	si_s581	TRINITY_DN7130_c0_g1	1642	1662	1653	-22.40	-14.60	0.651785714285714	18.5	10-20,1653-1643	1-9,1662-1654[UP5];21-21,1642-1642[UP3]	.(((((((((((.........&.........))))))))))).	GUUGUCCAUGAUGGAGCCUUG&AAUAAAAAAAUCAUGGAUAAA	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s581_TRINITY_DN7130_c0_g1_1653_TPlot.pdf
TRINITY_DN7130_c0_g1:241	si_a1	TRINITY_DN7130_c0_g1	231	250	241	-28.30	-18.70	0.660777385159011	4.5	1-13,250-238;16-21,236-231	14-15,237-237[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	GUUUUCA-UUCAGUUUCAGUU&AAUUGAAAUUGAAGAGAAAGC	4	0.924248336823933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a1_TRINITY_DN7130_c0_g1_241_TPlot.pdf
TRINITY_DN7130_c0_g1:911	si_a428	TRINITY_DN7130_c0_g1	900	920	911	-31.80	-22.90	0.720125786163522	8.5	2-4,919-917;6-18,915-903	1-1,920-920[UP5];5-5,916-916[SIL];19-21,902-900[UP3]	...(((((((((((((.(((.&.))).)))))))))))))...	GAGCCAAUGGAUCCUGGGUUG&AAAUAUAGGAUCCGUUGGAUA	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN7130_c0_g1_911_TPlot.pdf
TRINITY_DN7136_c0_g1:1655	si_a228	TRINITY_DN7136_c0_g1	1644	1664	1655	-27.10	-17.90	0.660516605166052	8	1-10,1664-1655;13-16,1652-1649;19-21,1646-1644	11-12,1654-1653[SIL];17-18,1648-1647[SIL]	(((..((((..((((((((((&))))))))))..))))..)))	GGAGAGAUUUGAGAGACAUGG&UCAUGUUUCUAUAAUCAAUUC	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN7136_c0_g1_1655_TPlot.pdf
TRINITY_DN7136_c0_g1:1838	si_s4	TRINITY_DN7136_c0_g1	1828	1847	1838	-21.60	-15.50	0.717592592592593	5	1-11,1847-1837;13-19,1836-1830	12-12,x-x[BULq];20-21,1829-1828[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	UUGUGAUGA-AAGUAAUAUAA&UUAUAUUACUUAUUAUUACUA	4	0.972450488396194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN7136_c0_g1_1838_TPlot.pdf
TRINITY_DN7136_c0_g1:1839	si_s3	TRINITY_DN7136_c0_g1	1829	1848	1839	-21.20	-16.20	0.764150943396226	3	1-12,1848-1837;14-20,1836-1830	13-13,x-x[BULq];21-21,1829-1829[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	UGUGAUGA-AAGUAAUAUAAA&UUUAUAUUACUUAUUAUUACU	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN7136_c0_g1_1839_TPlot.pdf
TRINITY_DN7136_c0_g1:1840	si_s2	TRINITY_DN7136_c0_g1	1830	1849	1840	-20.50	-15.90	0.775609756097561	3	2-13,1848-1837;15-21,1836-1830	1-1,1849-1849[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	GUGAUGA-AAGUAAUAUAAAC&UUUUAUAUUACUUAUUAUUAC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN7136_c0_g1_1840_TPlot.pdf
TRINITY_DN7136_c0_g1:85	si_a494	TRINITY_DN7136_c0_g1	74	96	85	-29.50	-20.28	0.687457627118644	8	1-7,96-90;10-21,85-74	8-9,89-86[AILt]	((((((((((((....(((((((&)))))))--..))))))))))))	GAAGACGAAAAAAAUUACAUAUU&AAUAUGU--CGUUUUUCGUCUUC	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN7136_c0_g1_85_TPlot.pdf
TRINITY_DN7138_c0_g1:514	si_a319	TRINITY_DN7138_c0_g1	502	523	514	-22.40	-16.90	0.754464285714286	7.5	1-11,523-513;12-18,511-505	x-x,512-512[BULt];19-21,504-502[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UAGAAAGAGACUCAUGGAUGAG&UUUAUCCAUGA-UUUUUUUAUU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN7138_c0_g1_514_TPlot.pdf
TRINITY_DN7138_c0_g1:574	si_a404	TRINITY_DN7138_c0_g1	563	583	574	-21.70	-14.20	0.654377880184332	9	1-1,583-583;4-16,580-568;18-21,566-563	2-3,582-581[SIL];17-17,567-567[SIL]	((((.(((((((((((((..(&)..))))))))))))).))))	UAAAAGUGAACGAGACGAAGC&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN7138_c0_g1_574_TPlot.pdf
TRINITY_DN7138_c0_g1:849	si_s79	TRINITY_DN7138_c0_g1	836	858	849	-26.20	-18.30	0.698473282442748	7.5	2-11,857-848;12-19,845-838	1-1,858-858[UP5];x-x,847-846[BULt];20-21,837-836[UP3]	..((((((((..((((((((((.&.))))))))))--))))))))..	UUGGAGAAAGAAGAAAGAAAAAG&UUUUUUCUUUC--CUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7138_c0_g1_849_TPlot.pdf
TRINITY_DN7138_c0_g1:850	si_s78	TRINITY_DN7138_c0_g1	837	859	850	-26.20	-19.80	0.755725190839695	6.5	1-12,859-848;13-20,845-838	x-x,847-846[BULt];21-21,837-837[UP3]	.((((((((..((((((((((((&))))))))))))--)))))))).	UGGAGAAAGAAGAAAGAAAAAGA&UUUUUUUCUUUC--CUUUCUUCU	2	0.999999606697329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7138_c0_g1_850_TPlot.pdf
TRINITY_DN7138_c0_g1:851	si_s77	TRINITY_DN7138_c0_g1	838	860	851	-25.50	-19.60	0.768627450980392	4.5	2-13,859-848;14-21,845-838	1-1,860-860[UP5];x-x,847-846[BULt]	((((((((..((((((((((((.&.))))))))))))--))))))))	GGAGAAAGAAGAAAGAAAAAGAU&UUUUUUUUCUUUC--CUUUCUUC	2	0.999995433644007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7138_c0_g1_851_TPlot.pdf
TRINITY_DN7139_c0_g1:48	si_a486	TRINITY_DN7139_c0_g1	36	57	48	-24.90	-16.40	0.65863453815261	5	1-13,57-45;14-19,43-38	x-x,44-44[BULt];20-21,37-36[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UUGACGAUAAUAUUUUAUAUAA&UUAUAUAGAAUAU-GUCGUUUU	4	0.999723974287346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN7139_c0_g1_48_TPlot.pdf
TRINITY_DN7142_c0_g1:1714	si_s758	TRINITY_DN7142_c0_g1	1703	1723	1714	-23.50	-15.90	0.676595744680851	12	5-16,1719-1708	1-4,1723-1720[UP5];17-21,1707-1703[UP3]	.....((((((((((((....&....)))))))))))).....	UAACUAUCGUUGUUGUUGUUG&UUAAAACAACAACGAUUAAUU	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN7142_c0_g1_1714_TPlot.pdf
TRINITY_DN7142_c0_g1:829	si_a68	TRINITY_DN7142_c0_g1	816	838	829	-25.40	-17.10	0.673228346456693	7	2-13,837-826;14-20,823-817	1-1,838-838[UP5];x-x,825-824[BULt];21-21,816-816[UP3]	.(((((((..((((((((((((.&.))))))))))))--))))))).	AGAGGAACUGAAUUUGAAGGAGC&CUUCUUUCAAAUU--GUUUUUCA	4	0.999999999942173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7142_c0_g1_829_TPlot.pdf
TRINITY_DN7144_c0_g1:435	si_a17	TRINITY_DN7144_c0_g1	424	444	435	-24.30	-15.90	0.654320987654321	6.5	2-14,443-431;16-17,429-428;19-20,426-425	1-1,444-444[UP5];15-15,430-430[SIL];18-18,427-427[SIL];21-21,424-424[UP3]	.((.((.(((((((((((((.&.))))))))))))).)).)).	UGCAAACAAUGAAUGGGCUUG&AAAGCCUAUUUAUUUUUAGUU	4	0.999999999473538	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN7144_c0_g1_435_TPlot.pdf
TRINITY_DN7144_c0_g1:922	si_s609	TRINITY_DN7144_c0_g1	908	931	922	-27.70	-18.52	0.668592057761733	11	1-12,931-920;15-21,914-908	13-14,919-915[AILt]	(((((((.....((((((((((((&))))))))))))---..)))))))	GUUUGGAAAAUGUGAAGAAGAUUU&GAAUCUUUUUUA---AAUCCAAGC	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN7144_c0_g1_922_TPlot.pdf
TRINITY_DN7146_c0_g1:621	si_a79	TRINITY_DN7146_c0_g1	610	630	621	-22.20	-15.30	0.689189189189189	7	1-15,630-616	16-21,615-610[UP3]	......(((((((((((((((&)))))))))))))))......	GCCCAGAAUAAUGAAGAACAA&UUGUUUUUCAUUAUUAAGAAA	2	0.998491877366458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN7146_c0_g1_621_TPlot.pdf
TRINITY_DN7146_c0_g1:622	si_a78	TRINITY_DN7146_c0_g1	611	631	622	-22.30	-16.30	0.730941704035874	6	1-16,631-616	17-21,615-611[UP3]	.....((((((((((((((((&)))))))))))))))).....	CCCAGAAUAAUGAAGAACAAU&AUUGUUUUUCAUUAUUAAGAA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN7146_c0_g1_622_TPlot.pdf
TRINITY_DN7146_c0_g1:626	si_a74	TRINITY_DN7146_c0_g1	615	635	626	-22.20	-16.50	0.743243243243243	9	5-20,631-616	1-4,635-632[UP5];21-21,615-615[UP3]	.((((((((((((((((....&....)))))))))))))))).	GAAUAAUGAAGAACAAUCACA&UCAAAUUGUUUUUCAUUAUUA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN7146_c0_g1_626_TPlot.pdf
TRINITY_DN7148_c0_g1:1497	si_s384	TRINITY_DN7148_c0_g1	1486	1506	1497	-38.50	-25.90	0.672727272727273	11.5	1-1,1506-1506;3-3,1504-1504;5-10,1502-1497;13-19,1494-1488	2-2,1505-1505[SIL];4-4,1503-1503[SIL];11-12,1496-1495[SIL];20-21,1487-1486[UP3]	..(((((((..((((((.(.(&).).))))))..)))))))..	AGGGGAUGUUCGGCGGAGGGG&CGUGUCCGCCUUACAUUCCAA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN7148_c0_g1_1497_TPlot.pdf
TRINITY_DN7148_c0_g1:1509	si_s85	TRINITY_DN7148_c0_g1	1498	1526	1509	-33.80	-23.40	0.692307692307692	20.5	1-3,1526-1524;4-8,1521-1517;9-21,1510-1498	x-x,1523-1522[BULt];x-x,1516-1511[BULt]	(((((((((((((......(((((..(((&)))--)))))------)))))))))))))	GCGGAGGGGGAGACUCGGCGAGGAUCGAG&CUU--UCCUU------UCUUCUUCUUCGC	4	0.99999999962935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN7148_c0_g1_1509_TPlot.pdf
TRINITY_DN7148_c0_g1:1827	si_s157	TRINITY_DN7148_c0_g1	1814	1836	1827	-45.20	-29.40	0.650442477876106	7	1-5,1836-1832;7-15,1830-1822;16-18,1820-1818;19-21,1816-1814	6-6,1831-1831[SIL];x-x,1821-1821[BULt];x-x,1817-1817[BULt]	(((.(((.(((((((((.(((((&))))).)))))))))-)))-)))	GCCACUUGGGCCAUGAGGCUCUU&AGGAGGUUCAUGGCC-AGG-GGU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s157_TRINITY_DN7148_c0_g1_1827_TPlot.pdf
TRINITY_DN7148_c0_g1:2228	si_s312	TRINITY_DN7148_c0_g1	2217	2237	2228	-29.00	-19.10	0.658620689655173	14.5	7-17,2231-2221;19-20,2219-2218	1-6,2237-2232[UP5];18-18,2220-2220[SIL];21-21,2217-2217[UP3]	.((.(((((((((((......&......))))))))))).)).	CGAGGAGGAGGACAGCUCGCC&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999999386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN7148_c0_g1_2228_TPlot.pdf
TRINITY_DN7148_c0_g1:4819	si_a794	TRINITY_DN7148_c0_g1	4808	4827	4819	-28.60	-21.10	0.737762237762238	6.5	2-5,4826-4823;7-19,4822-4810	1-1,4827-4827[UP5];6-6,x-x[BULq];20-21,4809-4808[UP3]	..(((((((((((((-((((.&.)))).)))))))))))))..	AGCGGGUUGGAGAAU-GAAAC&UUUUCUAUUUUCCAAUCCGAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN7148_c0_g1_4819_TPlot.pdf
TRINITY_DN7148_c0_g1:4821	si_a792	TRINITY_DN7148_c0_g1	4810	4829	4821	-27.60	-20.90	0.757246376811594	8.5	4-7,4826-4823;9-21,4822-4810	1-3,4829-4827[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	CGGGUUGGAGAAU-GAAACCU&AUUUUUCUAUUUUCCAAUCCG	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN7148_c0_g1_4821_TPlot.pdf
TRINITY_DN7149_c0_g1:1649	si_a4	TRINITY_DN7149_c0_g1	1638	1658	1649	-31.60	-20.90	0.661392405063291	11	6-21,1653-1638	1-5,1658-1654[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAGGCUUUCUUUUUAAAAUGC&UGAAAUUGAAGAGAAAGCCUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN7149_c0_g1_1649_TPlot.pdf
TRINITY_DN7149_c0_g1:756	si_s509	TRINITY_DN7149_c0_g1	745	764	756	-22.80	-15.50	0.679824561403509	9	1-4,764-761;6-17,760-749	5-5,x-x[BULq];18-21,748-745[UP3]	....((((((((((((-((((&)))).))))))))))))....	AAUGAAGAAUGUGGAG-UGUU&AACAAUUCUAUAUUCUUAAUU	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN7149_c0_g1_756_TPlot.pdf
TRINITY_DN714_c0_g2:254	si_a780	TRINITY_DN714_c0_g2	242	263	254	-27.30	-19.70	0.721611721611722	5	1-8,263-256;10-18,254-246;19-21,244-242	9-9,255-255[SIL];x-x,245-245[BULt]	(((.(((((((((.((((((((&)))))))).)))))))))-)))	UGGUAGAAAUAGAUGGGUUGAA&UUCAACUCUUCUAUUUUU-CUA	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN714_c0_g2_254_TPlot.pdf
TRINITY_DN714_c0_g2:258	si_a776	TRINITY_DN714_c0_g2	247	267	258	-27.10	-18.90	0.697416974169742	7.5	4-12,264-256;14-21,254-247	1-3,267-265[UP5];13-13,255-255[SIL]	((((((((.(((((((((...&...))))))))).))))))))	GAAAUAGAUGGGUUGAAUAUG&UUGAUUCAACUCUUCUAUUUU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN714_c0_g2_258_TPlot.pdf
TRINITY_DN7155_c0_g1:1012	si_a783	TRINITY_DN7155_c0_g1	1001	1021	1012	-24.70	-19.70	0.797570850202429	10	3-18,1019-1004	1-2,1021-1020[UP5];19-21,1003-1001[UP3]	...((((((((((((((((..&..))))))))))))))))...	CUCUGGAAGGAUGGGAGAGCC&AACUCUUCUAUUUUUCUAUUU	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7155_c0_g1_1012_TPlot.pdf
TRINITY_DN7155_c0_g1:1133	si_a435	TRINITY_DN7155_c0_g1	1122	1143	1133	-36.10	-23.80	0.659279778393352	7.5	1-3,1143-1141;4-7,1139-1136;9-11,1134-1132;14-21,1129-1122	x-x,1140-1140[BULt];8-8,1135-1135[SIL];12-13,1131-1130[SIL]	((((((((..(((.((((.(((&)))-)))).)))..))))))))	UGUCUCAUCGCCACCGGACUCC&GGA-UCCGUUGGAUAUGAGAUA	2	0.892241281710552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a435_TRINITY_DN7155_c0_g1_1133_TPlot.pdf
TRINITY_DN7155_c0_g1:1366	si_a330	TRINITY_DN7155_c0_g1	1355	1375	1366	-30.50	-26.60	0.872131147540984	12	6-21,1370-1355	1-5,1375-1371[UP5]	((((((((((((((((.....&.....))))))))))))))))	UCGGGACAAGGAGUGGCUCUG&UUUUUUUAUUCCUUGUCCCGA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN7155_c0_g1_1366_TPlot.pdf
TRINITY_DN7156_c0_g1:320	si_a404	TRINITY_DN7156_c0_g1	309	329	320	-21.70	-14.60	0.672811059907834	12	5-18,325-312	1-4,329-326[UP5];19-21,311-309[UP3]	...((((((((((((((....&....))))))))))))))...	CUUGUAUAGACAGAACAUCAG&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN7156_c0_g1_320_TPlot.pdf
TRINITY_DN7156_c0_g1:321	si_a403	TRINITY_DN7156_c0_g1	310	330	321	-22.00	-14.60	0.663636363636364	13	6-19,325-312	1-5,330-326[UP5];20-21,311-310[UP3]	..((((((((((((((.....&.....))))))))))))))..	UUGUAUAGACAGAACAUCAGC&AGAAUUGUUUUGUUUAUAUUU	2	0.999999993994514	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7156_c0_g1_321_TPlot.pdf
TRINITY_DN7156_c0_g1:616	si_a204	TRINITY_DN7156_c0_g1	605	629	616	-26.30	-17.94	0.68212927756654	15.5	1-7,629-623;11-20,615-606	8-10,622-616[AILt];21-21,605-605[UP3]	.((((((((((.......(((((((&)))))))----...)))))))))).	AAGUUAGUCGAAAUAAUGAUUAGUG&CACUAAU----AAAUCGACUAAUUA	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN7156_c0_g1_616_TPlot.pdf
TRINITY_DN7156_c0_g1:617	si_a203	TRINITY_DN7156_c0_g1	606	630	617	-26.90	-19.24	0.715241635687732	14.5	1-8,630-623;12-21,615-606	9-11,622-616[AILt]	((((((((((.......((((((((&))))))))----...))))))))))	AGUUAGUCGAAAUAAUGAUUAGUGA&UCACUAAU----AAAUCGACUAAUU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN7156_c0_g1_617_TPlot.pdf
TRINITY_DN7159_c0_g1:1104	si_a667	TRINITY_DN7159_c0_g1	1093	1112	1104	-32.10	-22.00	0.685358255451713	5	1-3,1112-1110;5-19,1109-1095	4-4,x-x[BULq];20-21,1094-1093[UP3]	..(((((((((((((((-(((&))).)))))))))))))))..	GAAAUAAGGAAUCAGUA-GCA&UGCCUAUUGAUUCCUUAUUCA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN7159_c0_g1_1104_TPlot.pdf
TRINITY_DN7159_c0_g1:1107	si_a664	TRINITY_DN7159_c0_g1	1096	1115	1107	-29.60	-21.10	0.712837837837838	8	4-6,1112-1110;8-21,1109-1096	1-3,1115-1113[UP5];7-7,x-x[BULq]	((((((((((((((-(((...&...))).))))))))))))))	AUAAGGAAUCAGUA-GCAACG&AAAUGCCUAUUGAUUCCUUAU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN7159_c0_g1_1107_TPlot.pdf
TRINITY_DN7159_c0_g1:995	si_a634	TRINITY_DN7159_c0_g1	984	1007	995	-26.40	-18.10	0.685606060606061	11	1-6,1007-1002;7-19,998-986	x-x,1001-999[BULt];20-21,985-984[UP3]	..(((((((((((((...((((((&))))))---)))))))))))))..	AGGCUUAAAAAAGUCACAGACGUA&UAUGUC---GAUUUUUUUGAGUAA	2	0.999476415612255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN7159_c0_g1_995_TPlot.pdf
TRINITY_DN7159_c0_g1:996	si_a633	TRINITY_DN7159_c0_g1	985	1008	996	-26.40	-19.00	0.71969696969697	10	1-7,1008-1002;8-20,998-986	x-x,1001-999[BULt];21-21,985-985[UP3]	.(((((((((((((...(((((((&)))))))---))))))))))))).	GGCUUAAAAAAGUCACAGACGUAA&UUAUGUC---GAUUUUUUUGAGUA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN7159_c0_g1_996_TPlot.pdf
TRINITY_DN7159_c0_g1:997	si_a632	TRINITY_DN7159_c0_g1	986	1009	997	-26.10	-18.60	0.71264367816092	10	2-8,1008-1002;9-21,998-986	1-1,1009-1009[UP5];x-x,1001-999[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	GCUUAAAAAAGUCACAGACGUAAA&AUUAUGUC---GAUUUUUUUGAGU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN7159_c0_g1_997_TPlot.pdf
TRINITY_DN7162_c0_g1:212	si_s813	TRINITY_DN7162_c0_g1	202	221	212	-27.10	-18.20	0.671586715867159	10	1-10,221-212;13-20,210-203	11-12,211-211[AILq];21-21,202-202[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	AGUUGUUGGC-GAGGGUGACG&CGUUACCUUUUCUUAAUAAUG	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN7162_c0_g1_212_TPlot.pdf
TRINITY_DN7162_c0_g1:219	si_s806	TRINITY_DN7162_c0_g1	208	228	219	-28.60	-19.70	0.688811188811189	9.5	1-5,228-224;8-17,221-212;19-20,210-209	6-7,223-222[SIL];18-18,211-211[SIL];21-21,208-208[UP3]	.((.((((((((((..(((((&)))))..)))))))))).)).	UGGCGAGGGUGACGUUGAUGA&UUAUCUUCGUUACCUUUUCUU	4	0.999999896158245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN7162_c0_g1_219_TPlot.pdf
TRINITY_DN7164_c1_g1:1482	si_a460	TRINITY_DN7164_c1_g1	1471	1491	1482	-21.60	-16.10	0.74537037037037	5	2-4,1490-1488;6-21,1486-1471	1-1,1491-1491[UP5];5-5,1487-1487[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AUUAUAUGUUAUAUAUUGCAC&UUGUUAUAUAUAAUAUGUAAU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN7164_c1_g1_1482_TPlot.pdf
TRINITY_DN7167_c0_g3:621	si_a128	TRINITY_DN7167_c0_g3	611	630	621	-23.20	-15.20	0.655172413793103	8	3-13,628-618;15-21,617-611	1-2,630-629[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	GUUGAUU-CUGUUGUUAUGUU&UUUAUAGCAAUAGUAAUUAAU	2	0.996613268617216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN7167_c0_g3_621_TPlot.pdf
TRINITY_DN7167_c1_g2:2820	si_a754	TRINITY_DN7167_c1_g2	2809	2833	2820	-34.60	-22.90	0.661849710982659	15	1-7,2833-2827;8-16,2822-2814	x-x,2826-2823[BULt];17-21,2813-2809[UP3]	.....(((((((((....(((((((&)))))))----))))))))).....	UCCGUACCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN7167_c1_g2_2820_TPlot.pdf
TRINITY_DN7167_c1_g2:2821	si_a753	TRINITY_DN7167_c1_g2	2810	2834	2821	-33.10	-22.90	0.691842900302115	15	2-8,2833-2827;9-17,2822-2814	1-1,2834-2834[UP5];x-x,2826-2823[BULt];18-21,2813-2810[UP3]	....(((((((((....(((((((.&.)))))))----)))))))))....	CCGUACCCAAGGGUCCGGGGUUCAA&AUGAACCU----CCUUUGGGUUUUU	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN7167_c1_g2_2821_TPlot.pdf
TRINITY_DN7167_c1_g2:2822	si_a752	TRINITY_DN7167_c1_g2	2811	2835	2822	-34.80	-22.90	0.658045977011494	16	3-9,2833-2827;10-18,2822-2814	1-2,2835-2834[UP5];x-x,2826-2823[BULt];19-21,2813-2811[UP3]	...(((((((((....(((((((..&..)))))))----)))))))))...	CGUACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	3	0.999329866654885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN7167_c1_g2_2822_TPlot.pdf
TRINITY_DN7167_c1_g2:404	si_s808	TRINITY_DN7167_c1_g2	393	414	404	-28.60	-19.30	0.674825174825175	9.5	1-9,414-406;11-17,403-397	10-10,405-404[AILt];18-21,396-393[UP3]	....(((((((..(((((((((&)))))))))-.)))))))....	AGACGAAGAGGAAAACGAGGAU&AUCUUCGUU-ACCUUUUCUUAA	4	0.999999989055347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN7167_c1_g2_404_TPlot.pdf
TRINITY_DN7167_c1_g2:406	si_s807	TRINITY_DN7167_c1_g2	394	415	406	-28.90	-20.40	0.705882352941176	8.5	1-10,415-406;12-18,403-397	11-11,405-404[AILt];19-21,396-394[UP3]	...(((((((..((((((((((&))))))))))-.)))))))...	GACGAAGAGGAAAACGAGGAUA&UAUCUUCGUU-ACCUUUUCUUA	4	0.999868715188327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN7167_c1_g2_406_TPlot.pdf
TRINITY_DN7167_c1_g2:408	si_s805	TRINITY_DN7167_c1_g2	396	417	408	-28.60	-20.60	0.72027972027972	8.5	3-12,415-406;14-20,403-397	1-2,417-416[UP5];13-13,405-404[AILt];21-21,396-396[UP3]	.(((((((..((((((((((..&..))))))))))-.))))))).	CGAAGAGGAAAACGAGGAUAUU&UUUAUCUUCGUU-ACCUUUUCU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN7167_c1_g2_408_TPlot.pdf
TRINITY_DN7167_c1_g2:410	si_s803	TRINITY_DN7167_c1_g2	398	419	410	-26.00	-17.00	0.653846153846154	10.5	5-14,415-406;16-21,403-398	1-4,419-416[UP5];15-15,405-404[AILt]	((((((..((((((((((....&....))))))))))-.))))))	AAGAGGAAAACGAGGAUAUUAA&AUUUUAUCUUCGUU-ACCUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN7167_c1_g2_410_TPlot.pdf
TRINITY_DN7167_c1_g2:760	si_a68	TRINITY_DN7167_c1_g2	749	769	760	-25.40	-17.40	0.68503937007874	8	1-11,769-759;13-18,757-752	12-12,758-758[SIL];19-21,751-749[UP3]	...((((((.(((((((((((&))))))))))).))))))...	CAUGGAGCGUUUUGAAAGAGG&CUUCUUUCAAAUUGUUUUUCA	2	0.999974560984214	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7167_c1_g2_760_TPlot.pdf
TRINITY_DN716_c0_g1:2734	si_a387	TRINITY_DN716_c0_g1	2723	2743	2734	-24.90	-16.80	0.674698795180723	6.5	1-8,2743-2736;10-21,2734-2723	9-9,2735-2735[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AUUCUGUAUUUUGAGUUUGGA&UUCGAAUUAAGAAUAUAGAAU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a387_TRINITY_DN716_c0_g1_2734_TPlot.pdf
TRINITY_DN716_c0_g1:2871	si_a496	TRINITY_DN716_c0_g1	2857	2880	2871	-32.40	-22.64	0.698765432098766	11	3-12,2878-2869;14-21,2864-2857	1-2,2880-2879[UP5];13-13,2868-2865[AILt]	((((((((....((((((((((..&..))))))))))---.))))))))	AGGAAGACAGUUGAAAACGACAAG&UAUGUCGUUUUU---CGUCUUCCU	2	0.998717173747751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN716_c0_g1_2871_TPlot.pdf
TRINITY_DN716_c0_g1:2872	si_a495	TRINITY_DN716_c0_g1	2858	2881	2872	-31.90	-21.34	0.668965517241379	9.5	4-13,2878-2869;15-21,2864-2858	1-3,2881-2879[UP5];14-14,2868-2865[AILt]	(((((((....((((((((((...&...))))))))))---.)))))))	GGAAGACAGUUGAAAACGACAAGA&AUAUGUCGUUUUU---CGUCUUCC	4	0.9999999949008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN716_c0_g1_2872_TPlot.pdf
TRINITY_DN7171_c0_g1:1654	si_a896	TRINITY_DN7171_c0_g1	1638	1663	1654	-21.60	-14.50	0.671296296296296	11	1-11,1663-1653;12-21,1647-1638	x-x,1652-1648[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	UUAUAUUACUUUCCAUAUUAUUAUUA&UAGUAAUAAUA-----AGUAAUAUAA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN7171_c0_g1_1654_TPlot.pdf
TRINITY_DN7174_c0_g1:1166	si_s43	TRINITY_DN7174_c0_g1	1156	1175	1166	-25.50	-18.80	0.737254901960784	6.5	1-13,1175-1163;15-19,1162-1158	14-14,x-x[BULq];20-21,1157-1156[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	GCUGAAG-CCAAUUGUUGAGG&CUUUAAUAAUUGGAUUUCAAG	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s43_TRINITY_DN7174_c0_g1_1166_TPlot.pdf
TRINITY_DN7174_c0_g1:1173	si_s36	TRINITY_DN7174_c0_g1	1162	1182	1173	-25.00	-16.50	0.66	14.5	7-20,1176-1163	1-6,1182-1177[UP5];21-21,1162-1162[UP3]	.((((((((((((((......&......)))))))))))))).	GCCAAUUGUUGAGGAACUAUG&ACUAAAUCUUUAAUAAUUGGA	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN7174_c0_g1_1173_TPlot.pdf
TRINITY_DN7177_c0_g1:4370	si_s71	TRINITY_DN7177_c0_g1	4359	4383	4370	-25.70	-17.00	0.66147859922179	12.5	1-4,4383-4380;5-19,4375-4361	x-x,4379-4376[BULt];20-21,4360-4359[UP3]	..(((((((((((((((....((((&))))----)))))))))))))))..	UAGAGAGAAAAGAGAUAAUUCGAAG&CUUC----UAUUUUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN7177_c0_g1_4370_TPlot.pdf
TRINITY_DN7177_c0_g1:880	si_a123	TRINITY_DN7177_c0_g1	869	890	880	-26.60	-17.92	0.673684210526316	13	1-5,890-886;9-19,881-871	6-8,885-882[AILt];20-21,870-869[UP3]	..(((((((((((....(((((&)))))-...)))))))))))..	CAACUAUUGCUAUCGGUGCGGG&CUUGU-UUUAUAGCAAUAGUAA	2	0.961645790589066	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN7177_c0_g1_880_TPlot.pdf
TRINITY_DN7177_c0_g2:1060	si_a454	TRINITY_DN7177_c0_g2	1049	1069	1060	-21.30	-15.10	0.708920187793427	10.5	3-18,1067-1052	1-2,1069-1068[UP5];19-21,1051-1049[UP3]	...((((((((((((((((..&..))))))))))))))))...	ACCUAUGUAUAAUAGCGGUAC&UAAUUGUUGUUAUAUAUAAUA	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN7177_c0_g2_1060_TPlot.pdf
TRINITY_DN7179_c0_g1:413	si_s798	TRINITY_DN7179_c0_g1	401	422	413	-29.30	-19.10	0.651877133105802	7.5	1-3,422-420;5-10,418-413;11-19,411-403	4-4,419-419[SIL];x-x,412-412[BULt];20-21,402-401[UP3]	..(((((((((.((((((.(((&))).))))))-)))))))))..	GGAAUGAAGAUAGAAAUAGGAG&CUCGUAUUUU-AUCUUCGUUAC	4	0.999991909822843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN7179_c0_g1_413_TPlot.pdf
TRINITY_DN7179_c0_g1:786	si_s86	TRINITY_DN7179_c0_g1	755	795	786	-32.90	-21.60	0.656534954407295	43.5	1-11,795-785;12-21,764-755	x-x,784-765[BULt]	((((((((((....................(((((((((((&)))))))))))--------------------))))))))))	GGCGAAGAAGCAGAUCGCCCAGAGAUAGCAGAGAGAGGAGA&UUUCCUUUCUU--------------------CUUCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7179_c0_g1_786_TPlot.pdf
TRINITY_DN717_c0_g1:2569	si_a844	TRINITY_DN717_c0_g1	2558	2579	2569	-29.20	-19.70	0.674657534246575	8.5	3-9,2577-2571;10-11,2569-2568;14-21,2565-2558	1-2,2579-2578[UP5];x-x,2570-2570[BULt];12-13,2567-2566[SIL]	((((((((..((.(((((((..&..)))))))-))..))))))))	AUUUCGAGGAAGACAACUUCAA&UAGAAGUUG-CUAACUUGAAAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a844_TRINITY_DN717_c0_g1_2569_TPlot.pdf
TRINITY_DN717_c0_g1:2876	si_s446	TRINITY_DN717_c0_g1	2865	2885	2876	-21.30	-13.90	0.652582159624413	9.5	1-11,2885-2875;13-17,2873-2869	12-12,2874-2874[SIL];18-21,2868-2865[UP3]	....(((((.(((((((((((&))))))))))).)))))....	AUCGUGUUGAUGUGUAUAGUG&UAUUAUAUAUAACAACAAUUA	3	0.995506443975926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN717_c0_g1_2876_TPlot.pdf
TRINITY_DN717_c0_g1:2878	si_s444	TRINITY_DN717_c0_g1	2867	2887	2878	-22.80	-15.30	0.671052631578947	8	2-13,2886-2875;15-19,2873-2869	1-1,2887-2887[UP5];14-14,2874-2874[SIL];20-21,2868-2867[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	CGUGUUGAUGUGUAUAGUGUU&CAUAUUAUAUAUAACAACAAU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN717_c0_g1_2878_TPlot.pdf
TRINITY_DN717_c0_g1:3325	si_a448	TRINITY_DN717_c0_g1	3314	3335	3325	-25.50	-17.50	0.686274509803922	7.5	2-3,3334-3333;4-19,3331-3316	1-1,3335-3335[UP5];x-x,3332-3332[BULt];20-21,3315-3314[UP3]	..((((((((((((((((.((.&.))-))))))))))))))))..	UGAUGGCGAUAAUUAUCUGCAA&AUG-AGAUAAUUGUUGUUAUAU	4	0.995612257516463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN717_c0_g1_3325_TPlot.pdf
TRINITY_DN717_c0_g2:1191	si_a20	TRINITY_DN717_c0_g2	1180	1199	1191	-26.70	-19.80	0.741573033707865	8.5	1-4,1199-1196;7-19,1194-1182	5-6,1195-1195[AILq];20-21,1181-1180[UP3]	..(((((((((((((.-((((&))))..)))))))))))))..	ACGAACUGAGAGUAAC-AGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN717_c0_g2_1191_TPlot.pdf
TRINITY_DN717_c0_g2:1192	si_a19	TRINITY_DN717_c0_g2	1181	1200	1192	-27.00	-19.90	0.737037037037037	8	2-5,1199-1196;8-20,1194-1182	1-1,1200-1200[UP5];6-7,1195-1195[AILq];21-21,1181-1181[UP3]	.(((((((((((((.-((((.&.))))..))))))))))))).	CGAACUGAGAGUAAC-AGGCA&AGCCUAUUUAUUUUUAGUUCU	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN717_c0_g2_1192_TPlot.pdf
TRINITY_DN717_c0_g2:1490	si_a72	TRINITY_DN717_c0_g2	1479	1499	1490	-21.90	-14.60	0.666666666666667	8	4-12,1496-1488;14-20,1486-1480	1-3,1499-1497[UP5];13-13,1487-1487[SIL];21-21,1479-1479[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	UUGGUGAAUAACAAUUUGCUG&UUUCAAAUUGUUUUUCAUUAU	3	0.999999999997802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN717_c0_g2_1490_TPlot.pdf
TRINITY_DN717_c0_g2:1580	si_s747	TRINITY_DN717_c0_g2	1569	1591	1580	-28.70	-19.80	0.689895470383275	8.5	2-6,1590-1586;7-20,1583-1570	1-1,1591-1591[UP5];x-x,1585-1584[BULt];21-21,1569-1569[UP3]	.((((((((((((((..(((((.&.)))))--)))))))))))))).	AUUGUUUUGAGGUUAGGGUCUAG&AUAGAU--UGACCUUAAAACAAC	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s747_TRINITY_DN717_c0_g2_1580_TPlot.pdf
TRINITY_DN717_c0_g2:1581	si_s746	TRINITY_DN717_c0_g2	1570	1592	1581	-27.00	-19.80	0.733333333333333	9.5	3-7,1590-1586;8-21,1583-1570	1-2,1592-1591[UP5];x-x,1585-1584[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	UUGUUUUGAGGUUAGGGUCUAGA&AAUAGAU--UGACCUUAAAACAA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN717_c0_g2_1581_TPlot.pdf
TRINITY_DN717_c0_g2:1582	si_s745	TRINITY_DN717_c0_g2	1571	1593	1582	-28.90	-19.00	0.657439446366782	11.5	4-8,1590-1586;9-21,1583-1571	1-3,1593-1591[UP5];x-x,1585-1584[BULt]	(((((((((((((..(((((...&...)))))--)))))))))))))	UGUUUUGAGGUUAGGGUCUAGAC&GAAUAGAU--UGACCUUAAAACA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s745_TRINITY_DN717_c0_g2_1582_TPlot.pdf
TRINITY_DN717_c0_g2:1630	si_a328	TRINITY_DN717_c0_g2	1620	1638	1630	-30.10	-20.70	0.687707641196013	8.5	1-4,1638-1635;6-9,1633-1630;12-21,1629-1620	5-5,1634-1634[SIL];10-11,x-x[BULq]	((((((((((--((((.((((&)))).))))..))))))))))	GGGAUAAGGA--GAAAUGAUC&GAUUUUUUUAUUCCUUGUCCC	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN717_c0_g2_1630_TPlot.pdf
TRINITY_DN7186_c0_g1:1341	si_s477	TRINITY_DN7186_c0_g1	1330	1351	1341	-27.10	-19.80	0.730627306273063	7	3-7,1349-1345;8-21,1343-1330	1-2,1351-1350[UP5];x-x,1344-1344[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	UAGAUAGAUAUAGGUAUUCGAC&AACGGAU-CCUAUAUUUAUUUA	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN7186_c0_g1_1341_TPlot.pdf
TRINITY_DN7189_c0_g1:1447	si_a242	TRINITY_DN7189_c0_g1	1432	1456	1447	-37.30	-24.70	0.662198391420912	6	2-11,1455-1446;12-15,1444-1441;16-17,1438-1437;18-21,1435-1432	1-1,1456-1456[UP5];x-x,1445-1445[BULt];x-x,1440-1439[BULt];x-x,1436-1436[BULt]	((((.((..((((.((((((((((.&.))))))))))-))))--))-))))	ACAACUCAUGGGGAGAUCGAAUUGG&UCAAUUCGAUC-CCCC--GA-UUGU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a242_TRINITY_DN7189_c0_g1_1447_TPlot.pdf
TRINITY_DN7189_c0_g1:4285	si_a147	TRINITY_DN7189_c0_g1	4275	4294	4285	-30.40	-21.60	0.710526315789474	6	2-11,4293-4284;14-20,4282-4276	1-1,4294-4294[UP5];12-13,4283-4283[AILq];21-21,4275-4275[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	AGACCUUAC-ACAACAAUGAC&AUCGUUGUUGUUUUAAGGUCA	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN7189_c0_g1_4285_TPlot.pdf
TRINITY_DN7189_c0_g1:4286	si_a146	TRINITY_DN7189_c0_g1	4276	4295	4286	-29.70	-21.10	0.710437710437711	6	3-12,4293-4284;15-21,4282-4276	1-2,4295-4294[UP5];13-14,4283-4283[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	GACCUUAC-ACAACAAUGACG&AAUCGUUGUUGUUUUAAGGUC	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN7189_c0_g1_4286_TPlot.pdf
TRINITY_DN7189_c0_g1:637	si_a249	TRINITY_DN7189_c0_g1	627	646	637	-41.10	-30.50	0.742092457420925	6.5	1-10,646-637;13-14,635-634;16-20,632-628	11-12,636-636[AILq];15-15,633-633[SIL];21-21,627-627[UP3]	.(((((.((.-((((((((((&))))))))))..)).))))).	ACUCGAGGCU-UCGGGGGAUC&GAUCCCCCGAUUGUAUCGAGG	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a249_TRINITY_DN7189_c0_g1_637_TPlot.pdf
TRINITY_DN718_c1_g1:3354	si_a471	TRINITY_DN718_c1_g1	3343	3363	3354	-21.10	-15.20	0.720379146919431	5.5	2-17,3362-3347	1-1,3363-3363[UP5];18-21,3346-3343[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACAAAAUAAUAAUUACAUAUC&AAUAUGUAAUUAUUGUUAUAU	4	0.991147896971067	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN718_c1_g1_3354_TPlot.pdf
TRINITY_DN718_c1_g1:3356	si_a469	TRINITY_DN718_c1_g1	3345	3365	3356	-21.10	-15.20	0.720379146919431	7.5	4-19,3362-3347	1-3,3365-3363[UP5];20-21,3346-3345[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAAAUAAUAAUUACAUAUCUA&AUAAUAUGUAAUUAUUGUUAU	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN718_c1_g1_3356_TPlot.pdf
TRINITY_DN7190_c0_g1:41	si_a873	TRINITY_DN7190_c0_g1	30	50	41	-27.00	-18.60	0.688888888888889	9	4-19,47-32	1-3,50-48[UP5];20-21,31-30[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCGAUUGCAGUUAAAUCUGAU&UAAAGAUUUAGUUGCAAUCAA	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN7190_c0_g1_41_TPlot.pdf
TRINITY_DN7192_c0_g1:417	si_a557	TRINITY_DN7192_c0_g1	406	426	417	-33.40	-25.10	0.751497005988024	6.5	1-14,426-413;16-19,411-408	15-15,412-412[SIL];20-21,407-406[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	CGUCACUGGGAGAUGGGGAAG&UUUCUUUAUCUCCCCGUGAAU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN7192_c0_g1_417_TPlot.pdf
TRINITY_DN7192_c0_g1:4238	si_a764	TRINITY_DN7192_c0_g1	4227	4249	4238	-28.90	-19.50	0.674740484429066	11	1-4,4249-4246;6-7,4244-4243;8-20,4240-4228	5-5,4245-4245[SIL];x-x,4242-4241[BULt];21-21,4227-4227[UP3]	.(((((((((((((..((.((((&)))).))--))))))))))))).	CUGGGUCAAUCGGAGGGAGCCAA&UUGGGUU--UUUGAUUGAUUCAA	4	0.999997346277844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN7192_c0_g1_4238_TPlot.pdf
TRINITY_DN7192_c0_g1:762	si_a54	TRINITY_DN7192_c0_g1	751	776	762	-37.30	-24.50	0.656836461126005	14.5	1-9,776-768;12-21,760-751	10-11,767-761[AILt]	((((((((((.......(((((((((&)))))))))-----..))))))))))	AAAGAAGUGAAAAAAUCCGACUCCUA&UAGGAGUCG-----ACUCGCUUCUUU	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN7192_c0_g1_762_TPlot.pdf
TRINITY_DN7193_c0_g3:533	si_a793	TRINITY_DN7193_c0_g3	522	542	533	-28.50	-19.00	0.666666666666667	8.5	3-7,540-536;10-20,533-523	1-2,542-541[UP5];8-9,535-534[SIL];21-21,522-522[UP3]	.(((((((((((..(((((..&..)))))..))))))))))).	CUGGAUUGGAAACAAGAAACA&UUUUUCUAUUUUCCAAUCCGA	2	0.997941414062317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7193_c0_g3_533_TPlot.pdf
TRINITY_DN7195_c0_g1:1311	si_s899	TRINITY_DN7195_c0_g1	1300	1320	1311	-28.30	-19.00	0.671378091872792	9.5	1-14,1320-1307;16-17,1305-1304	15-15,1306-1306[SIL];18-21,1303-1300[UP3]	....((.((((((((((((((&)))))))))))))).))....	GCCAGGUGUUGGAGAGGGAGU&GCUUUCUCUUCAAUUUCAAUU	2	0.999952601456911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN7195_c0_g1_1311_TPlot.pdf
TRINITY_DN7195_c0_g1:3662	si_a326	TRINITY_DN7195_c0_g1	3650	3671	3662	-26.20	-18.00	0.687022900763359	5	1-13,3671-3659;14-18,3657-3653;20-21,3651-3650	x-x,3658-3658[BULt];19-19,3652-3652[SIL]	((.(((((.(((((((((((((&)))))))))))))-))))).))	GAGAGGGAUGUAAGAAAAUUAU&AUGAUUUUUUUAU-UCCUUGUC	4	0.999997928537389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN7195_c0_g1_3662_TPlot.pdf
TRINITY_DN7202_c2_g1:1890	si_a72	TRINITY_DN7202_c2_g1	1879	1899	1890	-21.90	-17.50	0.799086757990868	7	2-6,1898-1894;8-21,1892-1879	1-1,1899-1899[UP5];7-7,1893-1893[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	GUAAUGAAGGGCGACUUGAAC&UUUCAAAUUGUUUUUCAUUAU	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN7202_c2_g1_1890_TPlot.pdf
TRINITY_DN720_c0_g1:2560	si_a72	TRINITY_DN720_c0_g1	2549	2569	2560	-21.90	-16.80	0.767123287671233	5	2-9,2568-2561;11-19,2559-2551	1-1,2569-2569[UP5];10-10,2560-2560[SIL];20-21,2550-2549[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AGAAUGAAAAAGAAUUUGAAU&UUUCAAAUUGUUUUUCAUUAU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN720_c0_g1_2560_TPlot.pdf
TRINITY_DN720_c0_g1:2562	si_a70	TRINITY_DN720_c0_g1	2551	2571	2562	-23.90	-16.40	0.686192468619247	7	4-11,2568-2561;13-21,2559-2551	1-3,2571-2569[UP5];12-12,2560-2560[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAUGAAAAAGAAUUUGAAUAC&UCUUUCAAAUUGUUUUUCAUU	2	0.999933670316614	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN720_c0_g1_2562_TPlot.pdf
TRINITY_DN7210_c0_g1:270	si_a65	TRINITY_DN7210_c0_g1	258	279	270	-27.70	-18.12	0.654151624548737	9	1-12,279-268;16-18,263-261	13-15,267-264[AILt];19-21,260-258[UP3]	...(((....((((((((((((&))))))))))))-...)))...	CCUACAUGACUGAAAGGAGCGA&UCGCUUCUUUCA-AAUUGUUUU	3	0.999999999878981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN7210_c0_g1_270_TPlot.pdf
TRINITY_DN7210_c0_g1:43	si_s693	TRINITY_DN7210_c0_g1	32	52	43	-23.90	-16.60	0.694560669456067	8.5	1-2,52-51;4-16,49-37;18-20,35-33	3-3,50-50[SIL];17-17,36-36[SIL];21-21,32-32[UP3]	.(((.(((((((((((((.((&)).))))))))))))).))).	AAGUCAAUCGGCUAGUUGCGC&GUUUAAUUAGUCGAUUUAUUA	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN7210_c0_g1_43_TPlot.pdf
TRINITY_DN7210_c0_g1:44	si_s692	TRINITY_DN7210_c0_g1	33	53	44	-24.20	-16.30	0.673553719008265	8.5	2-3,52-51;5-17,49-37;19-21,35-33	1-1,53-53[UP5];4-4,50-50[SIL];18-18,36-36[SIL]	(((.(((((((((((((.((.&.)).))))))))))))).)))	AGUCAAUCGGCUAGUUGCGCG&AGUUUAAUUAGUCGAUUUAUU	3	0.996100152895399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN7210_c0_g1_44_TPlot.pdf
TRINITY_DN7210_c0_g1:45	si_s691	TRINITY_DN7210_c0_g1	34	56	45	-26.20	-17.90	0.683206106870229	12.5	1-4,56-53;6-18,49-37	5-5,52-50[AILt];19-21,36-34[UP3]	...(((((((((((((...((((&))))--.)))))))))))))...	GUCAAUCGGCUAGUUGCGCGCUC&GAGU--UUAAUUAGUCGAUUUAU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN7210_c0_g1_45_TPlot.pdf
TRINITY_DN7210_c0_g1:46	si_s690	TRINITY_DN7210_c0_g1	35	57	46	-26.70	-18.70	0.700374531835206	11.5	1-5,57-53;7-19,49-37	6-6,52-50[AILt];20-21,36-35[UP3]	..(((((((((((((...(((((&)))))--.)))))))))))))..	UCAAUCGGCUAGUUGCGCGCUCA&UGAGU--UUAAUUAGUCGAUUUA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN7210_c0_g1_46_TPlot.pdf
TRINITY_DN7210_c0_g1:47	si_s689	TRINITY_DN7210_c0_g1	36	58	47	-26.50	-19.70	0.743396226415094	10.5	1-6,58-53;8-20,49-37	7-7,52-50[AILt];21-21,36-36[UP3]	.(((((((((((((...((((((&))))))--.))))))))))))).	CAAUCGGCUAGUUGCGCGCUCAU&AUGAGU--UUAAUUAGUCGAUUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s689_TRINITY_DN7210_c0_g1_47_TPlot.pdf
TRINITY_DN7210_c0_g1:519	si_s22	TRINITY_DN7210_c0_g1	509	528	519	-26.70	-19.30	0.722846441947566	5	1-14,528-515;16-17,514-513	15-15,x-x[BULq];18-21,512-509[UP3]	....((-((((((((((((((&)))))))))))))).))....	GAAAAG-UGCAAUCAAUAUAG&CUAUAUUGAUUGCAACUAAAU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN7210_c0_g1_519_TPlot.pdf
TRINITY_DN7210_c0_g1:520	si_s21	TRINITY_DN7210_c0_g1	510	529	520	-27.40	-19.90	0.726277372262774	5	2-15,528-515;17-18,514-513	1-1,529-529[UP5];16-16,x-x[BULq];19-21,512-510[UP3]	...((-((((((((((((((.&.)))))))))))))).))...	AAAAG-UGCAAUCAAUAUAGC&ACUAUAUUGAUUGCAACUAAA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN7210_c0_g1_520_TPlot.pdf
TRINITY_DN7210_c0_g1:522	si_s19	TRINITY_DN7210_c0_g1	512	531	522	-27.80	-19.90	0.715827338129496	7	4-17,528-515;19-20,514-513	1-3,531-529[UP5];18-18,x-x[BULq];21-21,512-512[UP3]	.((-((((((((((((((...&...)))))))))))))).)).	AAG-UGCAAUCAAUAUAGCAA&UUACUAUAUUGAUUGCAACUA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN7210_c0_g1_522_TPlot.pdf
TRINITY_DN7210_c0_g1:523	si_s18	TRINITY_DN7210_c0_g1	513	532	523	-27.50	-19.60	0.712727272727273	8	5-18,528-515;20-21,514-513	1-4,532-529[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	AG-UGCAAUCAAUAUAGCAAA&AUUACUAUAUUGAUUGCAACU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN7210_c0_g1_523_TPlot.pdf
TRINITY_DN7210_c0_g1:524	si_s17	TRINITY_DN7210_c0_g1	513	533	524	-27.20	-19.20	0.705882352941177	11	6-19,528-515	1-5,533-529[UP5];20-21,514-513[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGUGCAAUCAAUAUAGCAAAG&UAUUACUAUAUUGAUUGCAAC	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN7210_c0_g1_524_TPlot.pdf
TRINITY_DN7210_c0_g1:525	si_s16	TRINITY_DN7210_c0_g1	514	534	525	-25.60	-19.20	0.75	12	7-20,528-515	1-6,534-529[UP5];21-21,514-514[UP3]	.((((((((((((((......&......)))))))))))))).	GUGCAAUCAAUAUAGCAAAGC&UUAUUACUAUAUUGAUUGCAA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN7210_c0_g1_525_TPlot.pdf
TRINITY_DN7214_c0_g2:411	si_s460	TRINITY_DN7214_c0_g2	400	420	411	-30.80	-20.10	0.652597402597403	6.5	2-13,419-408;15-17,406-404	1-1,420-420[UP5];14-14,407-407[SIL];18-21,403-400[UP3]	....(((.((((((((((((.&.)))))))))))).)))....	CCACGGAAGUGAGAUAAUUGC&ACAAUUAUCUCAUAUCCAACG	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s460_TRINITY_DN7214_c0_g2_411_TPlot.pdf
TRINITY_DN7214_c0_g2:413	si_s458	TRINITY_DN7214_c0_g2	402	422	413	-29.30	-20.10	0.686006825938567	8.5	4-15,419-408;17-19,406-404	1-3,422-420[UP5];16-16,407-407[SIL];20-21,403-402[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	ACGGAAGUGAGAUAAUUGCAA&CAACAAUUAUCUCAUAUCCAA	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN7214_c0_g2_413_TPlot.pdf
TRINITY_DN721_c0_g1:1859	si_s799	TRINITY_DN721_c0_g1	1847	1869	1859	-30.00	-20.30	0.676666666666667	7.5	1-8,1869-1862;9-17,1860-1852;18-20,1850-1848	x-x,1861-1861[BULt];x-x,1851-1851[BULt];21-21,1847-1847[UP3]	.(((.(((((((((.((((((((&))))))))-)))))))))-))).	UGUGUACGAAGAUGUGAAUGCGA&UCGUAUUU-UAUCUUCGU-UACC	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN721_c0_g1_1859_TPlot.pdf
TRINITY_DN7220_c0_g1:279	si_s21	TRINITY_DN7220_c0_g1	268	289	279	-27.40	-18.70	0.682481751824818	9.5	1-4,289-286;5-17,284-272	x-x,285-285[BULt];18-21,271-268[UP3]	....(((((((((((((.((((&))))-)))))))))))))....	UCACGUUGUAGUCAAUGCUGGU&ACUA-UAUUGAUUGCAACUAAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN7220_c0_g1_279_TPlot.pdf
TRINITY_DN7220_c0_g1:282	si_s18	TRINITY_DN7220_c0_g1	271	292	282	-27.50	-20.00	0.727272727272727	9	2-7,291-286;8-20,284-272	1-1,292-292[UP5];x-x,285-285[BULt];21-21,271-271[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	CGUUGUAGUCAAUGCUGGUGGC&AUUACUA-UAUUGAUUGCAACU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN7220_c0_g1_282_TPlot.pdf
TRINITY_DN7220_c0_g1:294	si_s520	TRINITY_DN7220_c0_g1	283	303	294	-24.00	-15.80	0.658333333333333	9.5	2-12,302-292;15-18,289-286	1-1,303-303[UP5];13-14,291-290[SIL];19-21,285-283[UP3]	...((((..(((((((((((.&.)))))))))))..))))...	UGCUGGUGGCGGAUUAGGAGG&AUUCUUAAUUCGAAAUCAUUU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN7220_c0_g1_294_TPlot.pdf
TRINITY_DN7224_c0_g1:2782	si_a320	TRINITY_DN7224_c0_g1	2771	2791	2782	-24.40	-16.40	0.672131147540984	6	1-6,2791-2786;8-18,2784-2774;21-21,2771-2771	7-7,2785-2785[SIL];19-20,2773-2772[SIL]	(..(((((((((((.((((((&)))))).)))))))))))..)	GUUUAGAAAAAUCAGGGGUAG&UUAUCCAUGAUUUUUUUAUUC	2	0.999818223926229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN7224_c0_g1_2782_TPlot.pdf
TRINITY_DN7225_c0_g1:1275	si_s797	TRINITY_DN7225_c0_g1	1259	1284	1275	-30.00	-19.50	0.65	18	1-4,1284-1281;6-10,1279-1275;11-20,1269-1260	5-5,1280-1280[SIL];x-x,1274-1270[BULt];21-21,1259-1259[UP3]	.((((((((((.....(((((.((((&)))).)))))-----)))))))))).	AAACGGAGGUACGAUCGAGUGGGGGC&GCUCGUAUUU-----UAUCUUCGUUA	4	0.999999999856589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN7225_c0_g1_1275_TPlot.pdf
TRINITY_DN7225_c0_g1:2371	si_s756	TRINITY_DN7225_c0_g1	2360	2380	2371	-27.40	-18.30	0.667883211678832	10.5	1-5,2380-2376;8-17,2373-2364	6-7,2375-2374[SIL];18-21,2363-2360[UP3]	....((((((((((..(((((&)))))..))))))))))....	GGUCUUGUUGUUGUGGUGGGG&CCUUAAAACAACAACGAUUAA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s756_TRINITY_DN7225_c0_g1_2371_TPlot.pdf
TRINITY_DN7225_c0_g1:2372	si_s755	TRINITY_DN7225_c0_g1	2361	2381	2372	-28.10	-18.30	0.651245551601424	10.5	2-6,2380-2376;9-18,2373-2364	1-1,2381-2381[UP5];7-8,2375-2374[SIL];19-21,2363-2361[UP3]	...((((((((((..(((((.&.)))))..))))))))))...	GUCUUGUUGUUGUGGUGGGGA&ACCUUAAAACAACAACGAUUA	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s755_TRINITY_DN7225_c0_g1_2372_TPlot.pdf
TRINITY_DN7225_c0_g1:51	si_a68	TRINITY_DN7225_c0_g1	40	60	51	-25.40	-17.76	0.699212598425197	11	1-8,60-53;13-21,48-40	9-12,52-49[SIL]	(((((((((....((((((((&))))))))....)))))))))	UGAAAGACGUGUAGAGAGGAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7225_c0_g1_51_TPlot.pdf
TRINITY_DN7225_c0_g1:934	si_s622	TRINITY_DN7225_c0_g1	922	943	934	-34.20	-24.70	0.722222222222222	5.5	2-16,942-928;17-19,926-924	1-1,943-943[UP5];x-x,927-927[BULt];20-21,923-922[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	AAACGAAAGAGAUCGUUUGGAC&AUCCAAGCGAUCUUUU-CGUAG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN7225_c0_g1_934_TPlot.pdf
TRINITY_DN7225_c0_g1:937	si_s619	TRINITY_DN7225_c0_g1	925	946	937	-31.70	-23.10	0.728706624605678	9.5	5-19,942-928;20-21,926-925	1-4,946-943[UP5];x-x,927-927[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	CGAAAGAGAUCGUUUGGACGAA&UAAAUCCAAGCGAUCUUUU-CG	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN7225_c0_g1_937_TPlot.pdf
TRINITY_DN7225_c0_g1:938	si_s618	TRINITY_DN7225_c0_g1	927	947	938	-30.30	-21.20	0.6996699669967	11.5	6-20,942-928	1-5,947-943[UP5];21-21,927-927[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAGAGAUCGUUUGGACGAAG&UUAAAUCCAAGCGAUCUUUUC	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN7225_c0_g1_938_TPlot.pdf
TRINITY_DN7229_c1_g1:75	si_s771	TRINITY_DN7229_c1_g1	64	83	75	-25.20	-17.90	0.71031746031746	7.5	1-2,83-82;5-19,80-66	3-4,81-81[AILq];20-21,65-64[UP3]	..(((((((((((((((.-((&))..)))))))))))))))..	CAAUGGCGGUAGUAAUUU-UC&GAUUAAUUACUAUUGCUAUAA	4	0.916012145809652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN7229_c1_g1_75_TPlot.pdf
TRINITY_DN722_c0_g1:1968	si_s439	TRINITY_DN722_c0_g1	1957	1977	1968	-21.50	-14.70	0.683720930232558	9	2-16,1976-1962	1-1,1977-1977[UP5];17-21,1961-1957[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AUACUUAUAUGAUGUGUGAUC&AAUUACAUAUUAUAUAUAACA	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN722_c0_g1_1968_TPlot.pdf
TRINITY_DN722_c0_g1:1970	si_s437	TRINITY_DN722_c0_g1	1959	1979	1970	-19.70	-14.70	0.746192893401015	10.5	4-18,1976-1962	1-3,1979-1977[UP5];19-21,1961-1959[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACUUAUAUGAUGUGUGAUCGU&AUAAUUACAUAUUAUAUAUAA	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN722_c0_g1_1970_TPlot.pdf
TRINITY_DN7233_c0_g1:1074	si_a787	TRINITY_DN7233_c0_g1	1061	1083	1074	-26.30	-18.50	0.703422053231939	9	1-10,1083-1074;12-15,1072-1069;16-21,1066-1061	11-11,1073-1073[SIL];x-x,1068-1067[BULt]	((((((..((((.((((((((((&)))))))))).))))--))))))	UGGAAGCCAUGGUGAGAUGGGAG&CUUCUAUUUUUCUAU--UUUCCA	4	0.999999794783401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7233_c0_g1_1074_TPlot.pdf
TRINITY_DN7233_c0_g1:36	si_s878	TRINITY_DN7233_c0_g1	25	45	36	-23.50	-15.30	0.651063829787234	6.5	2-9,44-37;11-19,35-27	1-1,45-45[UP5];10-10,36-36[SIL];20-21,26-25[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	UGGUUUAUUUUAGGUUCUAAA&CUUAGAACUAAAAAUAAAUAG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s878_TRINITY_DN7233_c0_g1_36_TPlot.pdf
TRINITY_DN7237_c0_g2:212	si_a325	TRINITY_DN7237_c0_g2	199	221	212	-25.90	-17.00	0.656370656370656	11	4-12,218-210;13-21,207-199	1-3,221-219[UP5];x-x,209-208[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	GCGAGGAAUCAAAAAAAGUCCGG&CAUGAUUUUUUU--AUUCCUUGU	4	0.9999999783707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN7237_c0_g2_212_TPlot.pdf
TRINITY_DN7238_c0_g1:28	si_a411	TRINITY_DN7238_c0_g1	17	37	28	-17.90	-11.80	0.659217877094972	11	2-15,36-23	1-1,37-37[UP5];16-21,22-17[UP3]	......((((((((((((((.&.))))))))))))))......	GGGUGCUUAAGUAUGGACGAC&UUUGUUUAUAUUUAAAUAAAU	2	0.999999708257402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN7238_c0_g1_28_TPlot.pdf
TRINITY_DN7238_c0_g1:29	si_a410	TRINITY_DN7238_c0_g1	18	38	29	-17.80	-11.80	0.662921348314607	12	3-16,36-23	1-2,38-37[UP5];17-21,22-18[UP3]	.....((((((((((((((..&..)))))))))))))).....	GGUGCUUAAGUAUGGACGACG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7238_c0_g1_29_TPlot.pdf
TRINITY_DN723_c0_g2:2831	si_a332	TRINITY_DN723_c0_g2	2815	2840	2831	-30.60	-20.10	0.656862745098039	14	2-12,2839-2829;13-17,2824-2820;18-20,2818-2816	1-1,2840-2840[UP5];x-x,2828-2825[BULt];x-x,2819-2819[BULt];21-21,2815-2815[UP3]	.(((.(((((....(((((((((((.&.)))))))))))----)))))-))).	CUUCGGGGACCACAAGGGAAUGAAGG&UUUUUAUUCCUU----GUCCC-GAAA	4	0.999997606512646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN723_c0_g2_2831_TPlot.pdf
TRINITY_DN723_c0_g2:3609	si_a785	TRINITY_DN723_c0_g2	3598	3618	3609	-25.90	-17.00	0.656370656370656	7	2-9,3617-3610;11-15,3608-3604;17-21,3602-3598	1-1,3618-3618[UP5];10-10,3609-3609[SIL];16-16,3603-3603[SIL]	(((((.(((((.((((((((.&.)))))))).))))).)))))	GAGAAAGGAGAUAUAGGAGAU&CUCUUCUAUUUUUCUAUUUUC	2	0.99999999999917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN723_c0_g2_3609_TPlot.pdf
TRINITY_DN723_c0_g2:3615	si_a323	TRINITY_DN723_c0_g2	3602	3624	3615	-26.80	-18.30	0.682835820895522	6	1-13,3624-3612;14-16,3610-3608;17-21,3606-3602	x-x,3611-3611[BULt];x-x,3607-3607[BULt]	(((((.(((.(((((((((((((&)))))))))))))-)))-)))))	AAGGAGAUAUAGGAGAUUAUGGA&UCCAUGAUUUUUU-UAU-UCCUU	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN723_c0_g2_3615_TPlot.pdf
TRINITY_DN723_c0_g2:3633	si_a310	TRINITY_DN723_c0_g2	3622	3642	3633	-33.70	-22.90	0.679525222551929	9	1-2,3642-3641;4-18,3639-3625	3-3,3640-3640[SIL];19-21,3624-3622[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	GGAAUGGAUGGAUUCGAGGGA&UCGCUUGGAUUUAUCCAUGAU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN723_c0_g2_3633_TPlot.pdf
TRINITY_DN723_c0_g2:3634	si_a309	TRINITY_DN723_c0_g2	3623	3643	3634	-33.60	-23.60	0.702380952380952	7.5	1-3,3643-3641;5-19,3639-3625	4-4,3640-3640[SIL];20-21,3624-3623[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	GAAUGGAUGGAUUCGAGGGAA&UUCGCUUGGAUUUAUCCAUGA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN723_c0_g2_3634_TPlot.pdf
TRINITY_DN723_c0_g2:3647	si_a664	TRINITY_DN723_c0_g2	3636	3655	3647	-29.60	-20.80	0.702702702702703	6.5	2-8,3654-3648;10-19,3647-3638	1-1,3655-3655[UP5];9-9,x-x[BULq];20-21,3637-3636[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	CGAGGGAAUCAA-AGGUAUUA&AAAUGCCUAUUGAUUCCUUAU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN723_c0_g2_3647_TPlot.pdf
TRINITY_DN723_c0_g2:4034	si_s91	TRINITY_DN723_c0_g2	4020	4043	4034	-34.70	-23.30	0.671469740634006	9.5	2-12,4042-4032;13-18,4029-4024;19-20,4022-4021	1-1,4043-4043[UP5];x-x,4031-4030[BULt];x-x,4023-4023[BULt];21-21,4020-4020[UP3]	.((.((((((..(((((((((((.&.)))))))))))--))))))-)).	ACCAGGAGCGCAAGGAAGAAGAGG&UUUCUUCUUCUU--CGCUUC-GGA	2	0.999999915963014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN723_c0_g2_4034_TPlot.pdf
TRINITY_DN723_c0_g2:4035	si_s90	TRINITY_DN723_c0_g2	4021	4044	4035	-35.30	-23.80	0.674220963172805	7.5	2-13,4043-4032;14-19,4029-4024;20-21,4022-4021	1-1,4044-4044[UP5];x-x,4031-4030[BULt];x-x,4023-4023[BULt]	((.((((((..((((((((((((.&.))))))))))))--))))))-))	CCAGGAGCGCAAGGAAGAAGAGGA&CUUUCUUCUUCUU--CGCUUC-GG	4	0.999999999992811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN723_c0_g2_4035_TPlot.pdf
TRINITY_DN723_c0_g2:4072	si_a322	TRINITY_DN723_c0_g2	4058	4081	4072	-27.00	-18.24	0.675555555555555	8	1-14,4081-4068;16-21,4063-4058	15-15,4067-4064[AILt]	((((((....((((((((((((((&))))))))))))))---.))))))	AGGGAUUAGUAGGAGAUUAUGGAU&AUCCAUGAUUUUUU---UAUUCCU	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN723_c0_g2_4072_TPlot.pdf
TRINITY_DN723_c0_g2:4075	si_a319	TRINITY_DN723_c0_g2	4064	4084	4075	-22.40	-15.20	0.678571428571429	9.5	3-17,4082-4068	1-2,4084-4083[UP5];18-21,4067-4064[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAGUAGGAGAUUAUGGAUAUU&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999980636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN723_c0_g2_4075_TPlot.pdf
TRINITY_DN723_c0_g2:4076	si_a318	TRINITY_DN723_c0_g2	4065	4085	4076	-22.50	-15.20	0.675555555555556	10.5	4-18,4082-4068	1-3,4085-4083[UP5];19-21,4067-4065[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGUAGGAGAUUAUGGAUAUUC&AUUUAUCCAUGAUUUUUUUAU	2	0.99999968952523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN723_c0_g2_4076_TPlot.pdf
TRINITY_DN723_c0_g2:4388	si_a334	TRINITY_DN723_c0_g2	4374	4397	4388	-30.70	-21.50	0.700325732899023	13	1-10,4397-4388;11-16,4384-4379	x-x,4387-4385[BULt];17-21,4378-4374[UP3]	.....((((((...((((((((((&))))))))))---)))))).....	AUCGCCGGGACUAAAAGGAGUAGA&UUUAUUCCUU---GUCCCGAAAAU	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN723_c0_g2_4388_TPlot.pdf
TRINITY_DN723_c0_g2:4390	si_a332	TRINITY_DN723_c0_g2	4376	4399	4390	-30.60	-22.80	0.745098039215686	11.5	1-12,4399-4388;13-18,4384-4379	x-x,4387-4385[BULt];19-21,4378-4376[UP3]	...((((((...((((((((((((&))))))))))))---))))))...	CGCCGGGACUAAAAGGAGUAGAAG&UUUUUAUUCCUU---GUCCCGAAA	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN723_c0_g2_4390_TPlot.pdf
TRINITY_DN723_c0_g2:4391	si_a331	TRINITY_DN723_c0_g2	4377	4400	4391	-30.60	-23.20	0.758169934640523	9	2-13,4399-4388;14-19,4384-4379	1-1,4400-4400[UP5];x-x,4387-4385[BULt];20-21,4378-4377[UP3]	..((((((...((((((((((((.&.))))))))))))---))))))..	GCCGGGACUAAAAGGAGUAGAAGG&UUUUUUAUUCCUU---GUCCCGAA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN723_c0_g2_4391_TPlot.pdf
TRINITY_DN723_c0_g2:4392	si_a330	TRINITY_DN723_c0_g2	4378	4401	4392	-30.50	-24.80	0.813114754098361	8	1-14,4401-4388;15-20,4384-4379	x-x,4387-4385[BULt];21-21,4378-4378[UP3]	.((((((...((((((((((((((&))))))))))))))---)))))).	CCGGGACUAAAAGGAGUAGAAGGA&UUUUUUUAUUCCUU---GUCCCGA	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN723_c0_g2_4392_TPlot.pdf
TRINITY_DN723_c0_g2:4393	si_a329	TRINITY_DN723_c0_g2	4379	4402	4393	-29.60	-24.00	0.810810810810811	8	2-15,4401-4388;16-21,4384-4379	1-1,4402-4402[UP5];x-x,4387-4385[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	CGGGACUAAAAGGAGUAGAAGGAG&AUUUUUUUAUUCCUU---GUCCCG	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN723_c0_g2_4393_TPlot.pdf
TRINITY_DN723_c0_g2:4394	si_a328	TRINITY_DN723_c0_g2	4380	4403	4394	-30.10	-22.00	0.730897009966777	10	3-16,4401-4388;17-21,4384-4380	1-2,4403-4402[UP5];x-x,4387-4385[BULt]	(((((...((((((((((((((..&..))))))))))))))---)))))	GGGACUAAAAGGAGUAGAAGGAGC&GAUUUUUUUAUUCCUU---GUCCC	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN723_c0_g2_4394_TPlot.pdf
TRINITY_DN723_c0_g2:4398	si_s63	TRINITY_DN723_c0_g2	4387	4407	4398	-25.80	-18.50	0.717054263565891	8.5	3-6,4405-4402;9-21,4399-4387	1-2,4407-4406[UP5];7-8,4401-4400[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	AAAGGAGUAGAAGGAGCUAUA&GUUAGCAACUUCUAUUUUUUU	2	0.952608219099389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN723_c0_g2_4398_TPlot.pdf
TRINITY_DN723_c0_g2:4400	si_s72	TRINITY_DN723_c0_g2	4388	4410	4400	-24.10	-15.90	0.659751037344398	9.5	1-6,4410-4405;8-15,4402-4395;16-21,4393-4388	7-7,4404-4403[AILt];x-x,4394-4394[BULt]	((((((.((((((((..((((((&))))))-.))))))))-))))))	AAGGAGUAGAAGGAGCUAUAGGA&UUCUAU-UUUUUUUCU-UUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN723_c0_g2_4400_TPlot.pdf
TRINITY_DN723_c0_g2:4418	si_s809	TRINITY_DN723_c0_g2	4407	4428	4418	-28.50	-19.10	0.670175438596491	10	1-3,4428-4426;5-7,4424-4422;8-18,4420-4410	4-4,4425-4425[SIL];x-x,4421-4421[BULt];19-21,4409-4407[UP3]	...(((((((((((.(((.(((&))).)))-)))))))))))...	AGGAAGAAAGGGUGAACGUGGA&UCUUCGU-UACCUUUUCUUAAU	4	0.999999987353917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN723_c0_g2_4418_TPlot.pdf
TRINITY_DN723_c0_g2:4489	si_s616	TRINITY_DN723_c0_g2	4478	4498	4489	-28.30	-21.20	0.749116607773852	7.5	1-10,4498-4489;13-20,4486-4479	11-12,4488-4487[SIL];21-21,4478-4478[UP3]	.((((((((..((((((((((&))))))))))..)))))))).	CAGGGUCGCCAGGAUUUAGAG&UUUUAAAUCCAAGCGAUCUUU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN723_c0_g2_4489_TPlot.pdf
TRINITY_DN723_c0_g2:4490	si_s615	TRINITY_DN723_c0_g2	4479	4499	4490	-28.30	-21.60	0.763250883392226	7	2-11,4498-4489;14-21,4486-4479	1-1,4499-4499[UP5];12-13,4488-4487[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AGGGUCGCCAGGAUUUAGAGG&UUUUUAAAUCCAAGCGAUCUU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s615_TRINITY_DN723_c0_g2_4490_TPlot.pdf
TRINITY_DN723_c0_g2:4491	si_s614	TRINITY_DN723_c0_g2	4480	4500	4491	-28.30	-22.30	0.787985865724382	6	1-12,4500-4489;15-21,4486-4480	13-14,4488-4487[SIL]	(((((((..((((((((((((&))))))))))))..)))))))	GGGUCGCCAGGAUUUAGAGGA&UUUUUUAAAUCCAAGCGAUCU	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN723_c0_g2_4491_TPlot.pdf
TRINITY_DN723_c0_g2:4492	si_s613	TRINITY_DN723_c0_g2	4481	4501	4492	-29.20	-21.30	0.729452054794521	6.5	2-13,4500-4489;16-21,4486-4481	1-1,4501-4501[UP5];14-15,4488-4487[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GGUCGCCAGGAUUUAGAGGAC&CUUUUUUAAAUCCAAGCGAUC	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN723_c0_g2_4492_TPlot.pdf
TRINITY_DN723_c0_g2:4543	si_s314	TRINITY_DN723_c0_g2	4533	4552	4543	-31.50	-22.20	0.704761904761905	7.5	2-11,4551-4542;13-17,4541-4537;20-20,4534-4534	1-1,4552-4552[UP5];12-12,x-x[BULq];18-19,4536-4535[SIL];21-21,4533-4533[UP3]	.(..(((((-((((((((((.&.)))))))))).)))))..).	AGGAGCAAG-AGGACAGGAUG&AAUUCUGUCCUUCUUGUUACA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN723_c0_g2_4543_TPlot.pdf
TRINITY_DN723_c0_g2:4545	si_s312	TRINITY_DN723_c0_g2	4535	4554	4545	-29.00	-22.00	0.758620689655172	8.5	4-13,4551-4542;15-20,4541-4536	1-3,4554-4552[UP5];14-14,x-x[BULq];21-21,4535-4535[UP3]	.((((((-((((((((((...&...)))))))))).)))))).	GAGCAAG-AGGACAGGAUGCU&AAAAUUCUGUCCUUCUUGUUA	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN723_c0_g2_4545_TPlot.pdf
TRINITY_DN723_c0_g2:4546	si_s311	TRINITY_DN723_c0_g2	4536	4555	4546	-30.60	-22.60	0.738562091503268	6.5	1-2,4555-4554;5-14,4551-4542;16-21,4541-4536	3-4,4553-4552[SIL];15-15,x-x[BULq]	((((((-((((((((((..((&))..)))))))))).))))))	AGCAAG-AGGACAGGAUGCUC&GAAAAUUCUGUCCUUCUUGUU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN723_c0_g2_4546_TPlot.pdf
TRINITY_DN723_c0_g2:4547	si_s310	TRINITY_DN723_c0_g2	4537	4556	4547	-32.10	-22.10	0.688473520249221	7.5	2-3,4555-4554;6-15,4551-4542;17-21,4541-4537	1-1,4556-4556[UP5];4-5,4553-4552[SIL];16-16,x-x[BULq]	(((((-((((((((((..((.&.))..)))))))))).)))))	GCAAG-AGGACAGGAUGCUCC&CGAAAAUUCUGUCCUUCUUGU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s310_TRINITY_DN723_c0_g2_4547_TPlot.pdf
TRINITY_DN723_c0_g2:5917	si_s437	TRINITY_DN723_c0_g2	5907	5926	5917	-19.70	-13.30	0.6751269035533	9	4-12,5923-5915;14-21,5914-5907	1-3,5926-5924[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	UUGUAUGU-GUGUGUAAUAGA&AUAAUUACAUAUUAUAUAUAA	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN723_c0_g2_5917_TPlot.pdf
TRINITY_DN7240_c0_g1:168	si_a746	TRINITY_DN7240_c0_g1	156	182	168	-41.30	-27.10	0.656174334140436	15.5	1-5,182-178;6-10,172-168;12-18,165-159;20-21,157-156	x-x,177-173[BULt];11-11,167-166[AILt];19-19,158-158[SIL]	((.(((((((..(((((.....(((((&)))))-----)))))-.))))))).))	CAUGGGAGGUGGCAUGGGAGGUCCAGG&CCUGG-----CCAUG-AACCUCCUUUG	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a746_TRINITY_DN7240_c0_g1_168_TPlot.pdf
TRINITY_DN7240_c0_g1:177	si_a309	TRINITY_DN7240_c0_g1	167	186	177	-33.60	-23.40	0.696428571428571	8.5	2-13,185-174;15-20,173-168	1-1,186-186[UP5];14-14,x-x[BULq];21-21,167-167[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	GCAUGGG-AGGUCCAGGUGGC&UUCGCUUGGAUUUAUCCAUGA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN7240_c0_g1_177_TPlot.pdf
TRINITY_DN7241_c0_g1:28	si_a174	TRINITY_DN7241_c0_g1	17	37	28	-34.40	-22.40	0.651162790697674	9.5	1-15,37-23	16-21,22-17[UP3]	......(((((((((((((((&)))))))))))))))......	GGUCACUGUUUGGAUGGGUGA&UCACCCGUCUAGAUAAUAUCU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN7241_c0_g1_28_TPlot.pdf
TRINITY_DN7241_c0_g1:29	si_a173	TRINITY_DN7241_c0_g1	18	38	29	-33.80	-22.50	0.665680473372781	9	2-16,37-23	1-1,38-38[UP5];17-21,22-18[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GUCACUGUUUGGAUGGGUGAC&UUCACCCGUCUAGAUAAUAUC	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a173_TRINITY_DN7241_c0_g1_29_TPlot.pdf
TRINITY_DN7241_c0_g1:30	si_a172	TRINITY_DN7241_c0_g1	19	39	30	-31.90	-22.50	0.705329153605016	10	3-17,37-23	1-2,39-38[UP5];18-21,22-19[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCACUGUUUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	2	0.635102233151108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN7241_c0_g1_30_TPlot.pdf
TRINITY_DN7241_c0_g1:31	si_a171	TRINITY_DN7241_c0_g1	20	40	31	-32.10	-22.50	0.700934579439252	10.5	4-18,37-23	1-3,40-38[UP5];19-21,22-20[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACUGUUUGGAUGGGUGACCG&UAUUCACCCGUCUAGAUAAUA	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN7241_c0_g1_31_TPlot.pdf
TRINITY_DN7241_c0_g1:32	si_a170	TRINITY_DN7241_c0_g1	21	41	32	-33.40	-22.50	0.673652694610778	11.5	5-19,37-23	1-4,41-38[UP5];20-21,22-21[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACUGUUUGGAUGGGUGACCGA&CUAUUCACCCGUCUAGAUAAU	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a170_TRINITY_DN7241_c0_g1_32_TPlot.pdf
TRINITY_DN7241_c0_g1:34	si_a168	TRINITY_DN7241_c0_g1	23	51	34	-34.40	-23.00	0.668604651162791	19	2-6,50-46;7-21,37-23	1-1,51-51[UP5];x-x,45-38[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUUUGGAUGGGUGACCGAGCUCAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	0	0.047846587024839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN7241_c0_g1_34_TPlot.pdf
TRINITY_DN7242_c0_g1:1194	si_s812	TRINITY_DN7242_c0_g1	1182	1203	1194	-26.40	-19.30	0.731060606060606	6	1-14,1203-1190;17-21,1186-1182	15-16,1189-1187[AILt]	(((((...((((((((((((((&))))))))))))))-..)))))	AUUAUCUUAGAGAAGGUGAUGA&UCGUUACCUUUUCU-UAAUAAU	3	0.878198371106613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN7242_c0_g1_1194_TPlot.pdf
TRINITY_DN7242_c0_g1:1195	si_s811	TRINITY_DN7242_c0_g1	1184	1204	1195	-26.40	-18.60	0.704545454545455	10	2-15,1203-1190	1-1,1204-1204[UP5];16-21,1189-1184[UP3]	......((((((((((((((.&.))))))))))))))......	UAUCUUAGAGAAGGUGAUGAU&UUCGUUACCUUUUCUUAAUAA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN7242_c0_g1_1195_TPlot.pdf
TRINITY_DN7242_c0_g1:1198	si_s808	TRINITY_DN7242_c0_g1	1187	1207	1198	-28.60	-18.60	0.65034965034965	12.5	5-18,1203-1190	1-4,1207-1204[UP5];19-21,1189-1187[UP3]	...((((((((((((((....&....))))))))))))))...	CUUAGAGAAGGUGAUGAUGUA&AUCUUCGUUACCUUUUCUUAA	2	0.99999999456367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN7242_c0_g1_1198_TPlot.pdf
TRINITY_DN7242_c0_g1:1200	si_s797	TRINITY_DN7242_c0_g1	1189	1212	1200	-30.00	-19.84	0.661333333333333	12	1-8,1212-1205;10-17,1200-1193;19-21,1191-1189	9-9,1204-1201[AILt];18-18,1192-1192[SIL]	(((.((((((((....((((((((&))))))))---.)))))))).)))	UAGAGAAGGUGAUGAUGUACGAGC&GCUCGUAU---UUUAUCUUCGUUA	3	0.99999994418289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN7242_c0_g1_1200_TPlot.pdf
TRINITY_DN7242_c0_g1:1201	si_s796	TRINITY_DN7242_c0_g1	1190	1213	1201	-30.30	-20.34	0.671287128712871	13.5	1-9,1213-1205;11-18,1200-1193	10-10,1204-1201[AILt];19-21,1192-1190[UP3]	...((((((((....(((((((((&)))))))))---.))))))))...	AGAGAAGGUGAUGAUGUACGAGCU&AGCUCGUAU---UUUAUCUUCGUU	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN7242_c0_g1_1201_TPlot.pdf
TRINITY_DN7242_c0_g1:1205	si_s795	TRINITY_DN7242_c0_g1	1191	1214	1205	-30.30	-20.54	0.677887788778878	13	2-10,1213-1205;12-19,1200-1193	1-1,1214-1214[UP5];11-11,1204-1201[AILt];20-21,1192-1191[UP3]	..((((((((....(((((((((.&.)))))))))---.))))))))..	GAGAAGGUGAUGAUGUACGAGCUA&AAGCUCGUAU---UUUAUCUUCGU	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN7242_c0_g1_1205_TPlot.pdf
TRINITY_DN7242_c0_g1:1207	si_s793	TRINITY_DN7242_c0_g1	1193	1216	1207	-30.50	-20.14	0.660327868852459	14	4-12,1213-1205;14-21,1200-1193	1-3,1216-1214[UP5];13-13,1204-1201[AILt]	((((((((....(((((((((...&...)))))))))---.))))))))	GAAGGUGAUGAUGUACGAGCUAAA&ACAAGCUCGUAU---UUUAUCUUC	4	0.993231331481555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN7242_c0_g1_1207_TPlot.pdf
TRINITY_DN7242_c0_g1:1208	si_s792	TRINITY_DN7242_c0_g1	1197	1220	1208	-28.50	-19.30	0.67719298245614	11	2-4,1219-1217;5-13,1213-1205;15-19,1203-1199	1-1,1220-1220[UP5];x-x,1216-1214[BULt];14-14,1204-1204[SIL];20-21,1198-1197[UP3]	..(((((.(((((((((...(((.&.)))---))))))))).)))))..	GUGAUGAUGUACGAGCUAAAUGUG&AACA---AGCUCGUAUUUUAUCUU	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN7242_c0_g1_1208_TPlot.pdf
TRINITY_DN7242_c0_g1:1209	si_s791	TRINITY_DN7242_c0_g1	1198	1221	1209	-28.50	-19.30	0.67719298245614	12	3-5,1219-1217;6-14,1213-1205;16-20,1203-1199	1-2,1221-1220[UP5];x-x,1216-1214[BULt];15-15,1204-1204[SIL];21-21,1198-1198[UP3]	.(((((.(((((((((...(((..&..)))---))))))))).))))).	UGAUGAUGUACGAGCUAAAUGUGC&AAACA---AGCUCGUAUUUUAUCU	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s791_TRINITY_DN7242_c0_g1_1209_TPlot.pdf
TRINITY_DN7242_c0_g1:1210	si_s790	TRINITY_DN7242_c0_g1	1199	1222	1210	-27.80	-18.90	0.679856115107914	13	4-6,1219-1217;7-15,1213-1205;17-21,1203-1199	1-3,1222-1220[UP5];x-x,1216-1214[BULt];16-16,1204-1204[SIL]	(((((.(((((((((...(((...&...)))---))))))))).)))))	GAUGAUGUACGAGCUAAAUGUGCA&AAAACA---AGCUCGUAUUUUAUC	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN7242_c0_g1_1210_TPlot.pdf
TRINITY_DN7243_c1_g1:1214	si_a319	TRINITY_DN7243_c1_g1	1203	1223	1214	-22.40	-14.70	0.65625	11	6-21,1218-1203	1-5,1223-1219[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAUGGAAAAAUUAUGGCAACG&UUUAUCCAUGAUUUUUUUAUU	2	0.999999999953174	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN7243_c1_g1_1214_TPlot.pdf
TRINITY_DN7248_c0_g1:1058	si_a410	TRINITY_DN7248_c0_g1	1047	1067	1058	-17.80	-11.90	0.668539325842697	10.5	1-15,1067-1053	16-21,1052-1047[UP3]	......(((((((((((((((&)))))))))))))))......	AUGCGCUGGAUAUAAGCGAGG&UUUUGUUUAUAUUUAAAUAAA	2	0.999999976680179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7248_c0_g1_1058_TPlot.pdf
TRINITY_DN7248_c0_g1:1302	si_a128	TRINITY_DN7248_c0_g1	1291	1311	1302	-23.20	-15.40	0.663793103448276	7	2-7,1310-1305;9-19,1303-1293	1-1,1311-1311[UP5];8-8,1304-1304[SIL];20-21,1292-1291[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	GCUGAUUGCUAUUUCUGUAAU&UUUAUAGCAAUAGUAAUUAAU	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN7248_c0_g1_1302_TPlot.pdf
TRINITY_DN7248_c0_g1:1303	si_a127	TRINITY_DN7248_c0_g1	1292	1312	1303	-23.10	-15.40	0.666666666666667	8	3-8,1310-1305;10-20,1303-1293	1-2,1312-1311[UP5];9-9,1304-1304[SIL];21-21,1292-1292[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	CUGAUUGCUAUUUCUGUAAUA&UUUUAUAGCAAUAGUAAUUAA	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN7248_c0_g1_1303_TPlot.pdf
TRINITY_DN7248_c0_g1:911	si_s36	TRINITY_DN7248_c0_g1	901	921	911	-25.00	-16.30	0.652	6.5	1-9,921-913;10-17,911-904;19-20,903-902	x-x,912-912[BULt];18-18,x-x[BULq];21-21,901-901[UP3]	.((-((((((((.(((((((((&)))))))))-)))))))).)).	ACC-AUUGUUGAUAGAUUUGGU&ACUAAAUCU-UUAAUAAUUGGA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN7248_c0_g1_911_TPlot.pdf
TRINITY_DN7248_c0_g1:943	si_a318	TRINITY_DN7248_c0_g1	933	952	943	-22.50	-18.00	0.8	5.5	1-11,952-942;13-21,941-933	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	AUGGAGAAA-CGUGGAUGAAU&AUUUAUCCAUGAUUUUUUUAU	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN7248_c0_g1_943_TPlot.pdf
TRINITY_DN7248_c0_g1:945	si_a316	TRINITY_DN7248_c0_g1	935	956	945	-26.30	-18.00	0.684410646387833	8.5	1-3,956-954;4-13,951-942;15-21,941-935	x-x,953-952[BULt];14-14,x-x[BULq]	(((((((-((((((((((..(((&)))--)))))))))).)))))))	GGAGAAA-CGUGGAUGAAUUUCC&GGA--UUUAUCCAUGAUUUUUUU	4	0.999983678376299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN7248_c0_g1_945_TPlot.pdf
TRINITY_DN7255_c0_g1:2269	si_a204	TRINITY_DN7255_c0_g1	2255	2278	2269	-26.30	-18.50	0.703422053231939	12	1-11,2278-2268;12-17,2264-2259	x-x,2267-2265[BULt];18-21,2258-2255[UP3]	....((((((...(((((((((((&)))))))))))---))))))....	CGGAUAGUCGCAUGUUUGUUAGUG&CACUAAUAAAU---CGACUAAUUA	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN7255_c0_g1_2269_TPlot.pdf
TRINITY_DN7255_c0_g1:915	si_s88	TRINITY_DN7255_c0_g1	904	926	915	-34.80	-22.70	0.652298850574713	9	1-6,926-921;7-9,919-917;10-19,915-906	x-x,920-920[BULt];x-x,916-916[BULt];20-21,905-904[UP3]	..((((((((((.(((.((((((&))))))-)))-))))))))))..	UCGGUGAAGAGGAAAGCAGAGGA&UCCUUU-CUU-CUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7255_c0_g1_915_TPlot.pdf
TRINITY_DN7255_c0_g1:918	si_s86	TRINITY_DN7255_c0_g1	906	928	918	-32.90	-23.60	0.717325227963526	8	1-8,928-921;9-11,919-917;12-21,915-906	x-x,920-920[BULt];x-x,916-916[BULt]	((((((((((.(((.((((((((&))))))))-)))-))))))))))	GGUGAAGAGGAAAGCAGAGGAGG&UUUCCUUU-CUU-CUUCUUCGCU	4	0.999999908254907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7255_c0_g1_918_TPlot.pdf
TRINITY_DN7257_c0_g1:1344	si_s436	TRINITY_DN7257_c0_g1	1324	1353	1344	-19.60	-13.40	0.683673469387755	19	1-10,1353-1344;11-21,1334-1324	x-x,1343-1335[BULt]	(((((((((((.........((((((((((&))))))))))---------)))))))))))	UAUGUAUGAUAAUGACUUUUUGUAAUUAUU&AAUAAUUACA---------UAUUAUAUAUA	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN7257_c0_g1_1344_TPlot.pdf
TRINITY_DN725_c0_g1:2230	si_a634	TRINITY_DN725_c0_g1	2215	2239	2230	-26.40	-18.06	0.684090909090909	7.5	1-15,2239-2225;18-21,2218-2215	16-17,2224-2219[AILt]	((((......(((((((((((((((&)))))))))))))))----..))))	UUACGAGAGGAAGAAGAUCGACAUA&UAUGUCGAUUUUUUU----GAGUAA	3	0.999997108203053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN725_c0_g1_2230_TPlot.pdf
TRINITY_DN725_c0_g1:2231	si_a633	TRINITY_DN725_c0_g1	2220	2240	2231	-26.40	-17.70	0.670454545454545	7.5	2-16,2239-2225	1-1,2240-2240[UP5];17-21,2224-2220[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGAGGAAGAAGAUCGACAUAG&UUAUGUCGAUUUUUUUGAGUA	2	0.999986346763381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN725_c0_g1_2231_TPlot.pdf
TRINITY_DN725_c0_g1:2233	si_a631	TRINITY_DN725_c0_g1	2222	2242	2233	-25.70	-17.70	0.688715953307393	9	4-18,2239-2225	1-3,2242-2240[UP5];19-21,2224-2222[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGGAAGAAGAUCGACAUAGAA&UAUUAUGUCGAUUUUUUUGAG	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN725_c0_g1_2233_TPlot.pdf
TRINITY_DN725_c0_g1:2234	si_a630	TRINITY_DN725_c0_g1	2223	2243	2234	-25.80	-17.70	0.686046511627907	10	5-19,2239-2225	1-4,2243-2240[UP5];20-21,2224-2223[UP3]	..(((((((((((((((....&....)))))))))))))))..	GGAAGAAGAUCGACAUAGAAA&GUAUUAUGUCGAUUUUUUUGA	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN725_c0_g1_2234_TPlot.pdf
TRINITY_DN725_c0_g1:2235	si_a629	TRINITY_DN725_c0_g1	2224	2244	2235	-26.30	-17.70	0.673003802281369	11	6-20,2239-2225	1-5,2244-2240[UP5];21-21,2224-2224[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAAGAAGAUCGACAUAGAAAA&CGUAUUAUGUCGAUUUUUUUG	2	0.996737392194641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN725_c0_g1_2235_TPlot.pdf
TRINITY_DN7260_c0_g1:4087	si_s455	TRINITY_DN7260_c0_g1	4076	4097	4087	-27.30	-18.30	0.67032967032967	7.5	2-7,4096-4091;8-10,4089-4087;13-21,4084-4076	1-1,4097-4097[UP5];x-x,4090-4090[BULt];11-12,4086-4085[SIL]	(((((((((..(((.((((((.&.))))))-)))..)))))))))	GAUGUGAGAGCAUUAGUUGUUU&UAACAAC-AAUUAUCUCAUAUC	0	0.0207932514287128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s455_TRINITY_DN7260_c0_g1_4087_TPlot.pdf
TRINITY_DN7261_c0_g1:4474	si_s553	TRINITY_DN7261_c0_g1	4463	4483	4474	-23.50	-15.50	0.659574468085106	11.5	6-20,4478-4464	1-5,4483-4479[UP5];21-21,4463-4463[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACGAGAAUAUUAAUUUAAUGU&AAAUAGAAUUAAUAUUUUCGG	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN7261_c0_g1_4474_TPlot.pdf
TRINITY_DN7261_c0_g1:4475	si_s552	TRINITY_DN7261_c0_g1	4464	4484	4475	-21.10	-15.00	0.710900473933649	12.5	7-21,4478-4464	1-6,4484-4479[UP5]	(((((((((((((((......&......)))))))))))))))	CGAGAAUAUUAAUUUAAUGUA&AAAAUAGAAUUAAUAUUUUCG	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN7261_c0_g1_4475_TPlot.pdf
TRINITY_DN7262_c0_g1:1084	si_s29	TRINITY_DN7262_c0_g1	1072	1093	1084	-26.40	-19.50	0.738636363636364	10	1-10,1093-1084;13-18,1080-1075	11-12,1083-1081[AILt];19-21,1074-1072[UP3]	...((((((...((((((((((&))))))))))-..))))))...	GAAAAAGAUGGCGGUUGCAAUC&GAUUGCAACU-AAAUCUUUAAU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s29_TRINITY_DN7262_c0_g1_1084_TPlot.pdf
TRINITY_DN7262_c0_g1:1086	si_s27	TRINITY_DN7262_c0_g1	1074	1095	1086	-27.00	-20.40	0.755555555555556	7	2-12,1094-1084;15-20,1080-1075	1-1,1095-1095[UP5];13-14,1083-1081[AILt];21-21,1074-1074[UP3]	.((((((...(((((((((((.&.)))))))))))-..)))))).	AAAAGAUGGCGGUUGCAAUCAC&UUGAUUGCAACU-AAAUCUUUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN7262_c0_g1_1086_TPlot.pdf
TRINITY_DN7262_c0_g1:1094	si_s19	TRINITY_DN7262_c0_g1	1083	1102	1094	-27.80	-19.30	0.694244604316547	8.5	2-7,1101-1096;10-20,1094-1084	1-1,1102-1102[UP5];8-9,1095-1095[AILq];21-21,1083-1083[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	CGGUUGCAAUCAC-AUGGUGU&UUACUAUAUUGAUUGCAACUA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN7262_c0_g1_1094_TPlot.pdf
TRINITY_DN7262_c0_g1:445	si_a321	TRINITY_DN7262_c0_g1	434	457	445	-26.70	-17.70	0.662921348314607	12.5	3-9,455-449;10-21,445-434	1-2,457-456[UP5];x-x,448-446[BULt]	((((((((((((...(((((((..&..)))))))---))))))))))))	GGGAUAAGGAGAAACUUAUGGAAA&UAUCCAUGA---UUUUUUUAUUCC	3	0.999980212609515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN7262_c0_g1_445_TPlot.pdf
TRINITY_DN7263_c0_g1:4239	si_s188	TRINITY_DN7263_c0_g1	4228	4248	4239	-28.20	-19.58	0.694326241134752	7.5	1-4,4248-4245;8-20,4241-4229	5-7,4244-4242[SIL];21-21,4228-4228[UP3]	.(((((((((((((...((((&))))...))))))))))))).	UUUCCAGAAUAAUCAAAACUC&GAGUAACGAUUAUUUUGGAAU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN7263_c0_g1_4239_TPlot.pdf
TRINITY_DN7265_c0_g1:432	si_s428	TRINITY_DN7265_c0_g1	421	442	432	-21.50	-18.10	0.841860465116279	4.5	1-6,442-437;7-20,435-422	x-x,436-436[BULt];21-21,421-421[UP3]	.((((((((((((((.((((((&))))))-)))))))))))))).	UUAUGUGAUUAUUGUGUAUGUA&UAUAUA-ACAAUAAUUACAUAU	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN7265_c0_g1_432_TPlot.pdf
TRINITY_DN7265_c0_g2:628	si_s76	TRINITY_DN7265_c0_g2	616	637	628	-23.60	-17.50	0.741525423728813	8.5	5-18,633-620;19-21,618-616	1-4,637-634[UP5];x-x,619-619[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	AAGAAGAGGAAAGAAAAAUUUU&AUUUUUUUUCUUUCCUUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7265_c0_g2_628_TPlot.pdf
TRINITY_DN7269_c0_g1:321	si_s442	TRINITY_DN7269_c0_g1	310	330	321	-23.80	-15.80	0.663865546218487	6	1-16,330-315	17-21,314-310[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUUUUUAUGUAUAAUAUGUA&UACAUAUUAUAUAUAACAACA	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN7269_c0_g1_321_TPlot.pdf
TRINITY_DN7269_c0_g1:322	si_s441	TRINITY_DN7269_c0_g1	311	331	322	-23.20	-16.00	0.689655172413793	5.5	2-17,330-315	1-1,331-331[UP5];18-21,314-311[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUUUUAUGUAUAAUAUGUAG&UUACAUAUUAUAUAUAACAAC	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN7269_c0_g1_322_TPlot.pdf
TRINITY_DN7269_c0_g1:324	si_s439	TRINITY_DN7269_c0_g1	313	333	324	-21.50	-16.00	0.744186046511628	7.5	4-19,330-315	1-3,333-331[UP5];20-21,314-313[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUUUAUGUAUAAUAUGUAGAA&AAUUACAUAUUAUAUAUAACA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN7269_c0_g1_324_TPlot.pdf
TRINITY_DN7269_c0_g1:326	si_s437	TRINITY_DN7269_c0_g1	315	335	326	-19.70	-16.00	0.812182741116751	9.5	6-21,330-315	1-5,335-331[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUAUGUAUAAUAUGUAGAAUA&AUAAUUACAUAUUAUAUAUAA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN7269_c0_g1_326_TPlot.pdf
TRINITY_DN726_c0_g1:419	si_s86	TRINITY_DN726_c0_g1	407	428	419	-32.90	-21.50	0.653495440729483	10.5	4-9,425-420;12-19,417-410;20-21,408-407	1-3,428-426[UP5];10-11,419-418[SIL];x-x,409-409[BULt]	((.((((((((..((((((...&...))))))..))))))))-))	GGACGAAGAAGUUGAAAGGCAU&UUUCCUUUCUUCUUCUUCG-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN726_c0_g1_419_TPlot.pdf
TRINITY_DN7271_c0_g1:258	si_a836	TRINITY_DN7271_c0_g1	247	267	258	-24.10	-15.70	0.651452282157676	18.5	10-20,258-248	1-9,267-259[UP5];21-21,247-247[UP3]	.(((((((((((.........&.........))))))))))).	GUAGCAGCUUCUUAUGUUAAA&AAAAAAAAUAGAAGUUGCUAA	4	0.999987259542911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN7271_c0_g1_258_TPlot.pdf
TRINITY_DN7271_c0_g1:492	si_a855	TRINITY_DN7271_c0_g1	481	501	492	-24.70	-16.30	0.659919028340081	10	2-12,500-490	1-1,501-501[UP5];13-21,489-481[UP3]	.........(((((((((((.&.))))))))))).........	ACCUGUCUAGGAUUUCAAGUG&AACUUGAAAUCCAAUUAUUAA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN7271_c0_g1_492_TPlot.pdf
TRINITY_DN7271_c0_g1:493	si_a854	TRINITY_DN7271_c0_g1	482	502	493	-25.00	-16.30	0.652	11	3-13,500-490	1-2,502-501[UP5];14-21,489-482[UP3]	........(((((((((((..&..)))))))))))........	CCUGUCUAGGAUUUCAAGUGU&UAACUUGAAAUCCAAUUAUUA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN7271_c0_g1_493_TPlot.pdf
TRINITY_DN7272_c0_g1:494	si_s412	TRINITY_DN7272_c0_g1	483	503	494	-26.40	-17.80	0.674242424242424	7.5	1-4,503-500;6-17,498-487	5-5,499-499[SIL];18-21,486-483[UP3]	....((((((((((((.((((&)))).))))))))))))....	UAUGAGGAUAUGUUGUAUUUC&GAAAAACGACAUAUUCUAUAU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s412_TRINITY_DN7272_c0_g1_494_TPlot.pdf
TRINITY_DN7274_c0_g1:774	si_a793	TRINITY_DN7274_c0_g1	758	784	774	-28.50	-19.40	0.680701754385965	10	1-9,784-776;10-15,774-769;16-21,763-758	x-x,775-775[BULt];x-x,768-764[BULt]	((((((.....((((((.(((((((((&)))))))))-))))))-----))))))	UCGGAUAUUGAUGGAAAUAUAGGGAGA&UUUUUCUAU-UUUCCA-----AUCCGA	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7274_c0_g1_774_TPlot.pdf
TRINITY_DN7275_c0_g1:1480	si_a497	TRINITY_DN7275_c0_g1	1467	1489	1480	-32.00	-21.60	0.675	12	3-10,1487-1480;12-19,1476-1469	1-2,1489-1488[UP5];11-11,1479-1477[AILt];20-21,1468-1467[UP3]	..((((((((...((((((((..&..))))))))--.))))))))..	GUGGAAGACGCUCAAAGCGACCG&AUGUCGUUUU--UCGUCUUCCUU	4	0.999999999999736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7275_c0_g1_1480_TPlot.pdf
TRINITY_DN7275_c0_g1:2118	si_a641	TRINITY_DN7275_c0_g1	2106	2127	2118	-23.60	-16.00	0.677966101694915	8	2-11,2126-2117;14-21,2113-2106	1-1,2127-2127[UP5];12-13,2116-2114[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	UGAUGUAUGAUCUCAAGAAAAC&AUUUUUUUGAG-UAAUAUAUCG	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN7275_c0_g1_2118_TPlot.pdf
TRINITY_DN7277_c0_g1:2238	si_s292	TRINITY_DN7277_c0_g1	2222	2247	2238	-36.60	-23.80	0.650273224043716	15	2-10,2246-2238;11-21,2232-2222	1-1,2247-2247[UP5];x-x,2237-2233[BULt]	(((((((((((.....(((((((((.&.)))))))))-----)))))))))))	UCGCAGUUUCAAAACAGUUGGCUAGU&CCUAGUCGAU-----UGGAAUUGCGA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s292_TRINITY_DN7277_c0_g1_2238_TPlot.pdf
TRINITY_DN7277_c0_g1:2353	si_s553	TRINITY_DN7277_c0_g1	2339	2362	2353	-23.50	-15.42	0.656170212765957	15	3-10,2360-2353;13-21,2347-2339	1-2,2362-2361[UP5];11-12,2352-2348[AILt]	(((((((((.....((((((((..&..))))))))---..)))))))))	CCGAAGAUGAAGAAGAUUCUAUAG&AAAUAGAAUU---AAUAUUUUCGG	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN7277_c0_g1_2353_TPlot.pdf
TRINITY_DN7277_c0_g1:2442	si_a506	TRINITY_DN7277_c0_g1	2431	2451	2442	-33.40	-22.10	0.661676646706587	5	1-3,2451-2449;5-13,2447-2439;16-17,2436-2435;19-21,2433-2431	4-4,2448-2448[SIL];14-15,2438-2437[SIL];18-18,2434-2434[SIL]	(((.((..(((((((((.(((&))).)))))))))..)).)))	UUAGAUGACAAGGAAGAGGAA&UUCGUCUUCCUUGGAAUGUAA	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN7277_c0_g1_2442_TPlot.pdf
TRINITY_DN7277_c0_g1:2444	si_a504	TRINITY_DN7277_c0_g1	2433	2453	2444	-32.90	-21.70	0.659574468085106	6	1-5,2453-2449;7-15,2447-2439;18-19,2436-2435;21-21,2433-2433	6-6,2448-2448[SIL];16-17,2438-2437[SIL];20-20,2434-2434[SIL]	(.((..(((((((((.(((((&))))).)))))))))..)).)	AGAUGACAAGGAAGAGGAAGA&UUUUCGUCUUCCUUGGAAUGU	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN7277_c0_g1_2444_TPlot.pdf
TRINITY_DN7277_c0_g1:2445	si_a503	TRINITY_DN7277_c0_g1	2434	2454	2445	-32.10	-22.60	0.70404984423676	6	1-6,2454-2449;8-16,2447-2439;19-20,2436-2435	7-7,2448-2448[SIL];17-18,2438-2437[SIL];21-21,2434-2434[UP3]	.((..(((((((((.((((((&)))))).)))))))))..)).	GAUGACAAGGAAGAGGAAGAA&UUUUUCGUCUUCCUUGGAAUG	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN7277_c0_g1_2445_TPlot.pdf
TRINITY_DN7277_c0_g1:2446	si_a502	TRINITY_DN7277_c0_g1	2435	2455	2446	-32.10	-22.10	0.688473520249221	6	2-7,2454-2449;9-17,2447-2439;20-21,2436-2435	1-1,2455-2455[UP5];8-8,2448-2448[SIL];18-19,2438-2437[SIL]	((..(((((((((.((((((.&.)))))).)))))))))..))	AUGACAAGGAAGAGGAAGAAG&GUUUUUCGUCUUCCUUGGAAU	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN7277_c0_g1_2446_TPlot.pdf
TRINITY_DN7277_c0_g1:2449	si_a499	TRINITY_DN7277_c0_g1	2438	2458	2449	-35.20	-24.20	0.6875	8	1-2,2458-2457;5-10,2454-2449;12-20,2447-2439	3-4,2456-2455[SIL];11-11,2448-2448[SIL];21-21,2438-2438[UP3]	.(((((((((.((((((..((&))..)))))).))))))))).	ACAAGGAAGAGGAAGAAGAAC&GUCGUUUUUCGUCUUCCUUGG	3	0.999999069262624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN7277_c0_g1_2449_TPlot.pdf
TRINITY_DN7277_c0_g1:2451	si_a497	TRINITY_DN7277_c0_g1	2440	2460	2451	-32.00	-21.60	0.675	7	2-4,2459-2457;7-12,2454-2449;14-21,2447-2440	1-1,2460-2460[UP5];5-6,2456-2455[SIL];13-13,2448-2448[SIL]	((((((((.((((((..(((.&.)))..)))))).))))))))	AAGGAAGAGGAAGAAGAACAA&AUGUCGUUUUUCGUCUUCCUU	3	0.999999999999615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7277_c0_g1_2451_TPlot.pdf
TRINITY_DN7277_c0_g1:2941	si_s898	TRINITY_DN7277_c0_g1	2928	2950	2941	-30.70	-20.20	0.657980456026059	10	2-11,2949-2940;12-18,2937-2931	1-1,2950-2950[UP5];x-x,2939-2938[BULt];19-21,2930-2928[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	CAGGAAAUUGUAAAGAGAGGGCA&GGCUUUCUCUU--CAAUUUCAAU	3	0.999999993978986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN7277_c0_g1_2941_TPlot.pdf
TRINITY_DN7277_c0_g1:3404	si_a756	TRINITY_DN7277_c0_g1	3392	3413	3404	-33.10	-22.80	0.688821752265861	9	3-14,3411-3400;15-19,3398-3394	1-2,3413-3412[UP5];x-x,3399-3399[BULt];20-21,3393-3392[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	UACGAGGCAUCCAGAGGAGGAA&AACCUCCUUUGGGU-UUUUGAU	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN7277_c0_g1_3404_TPlot.pdf
TRINITY_DN7277_c0_g1:3405	si_a755	TRINITY_DN7277_c0_g1	3393	3414	3405	-34.90	-22.80	0.653295128939828	10	4-15,3411-3400;16-20,3398-3394	1-3,3414-3412[UP5];x-x,3399-3399[BULt];21-21,3393-3393[UP3]	.(((((.((((((((((((...&...))))))))))))-))))).	ACGAGGCAUCCAGAGGAGGAAC&GAACCUCCUUUGGGU-UUUUGA	2	0.999565582530106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN7277_c0_g1_3405_TPlot.pdf
TRINITY_DN7277_c0_g1:3464	si_a479	TRINITY_DN7277_c0_g1	3452	3473	3464	-23.00	-16.20	0.704347826086956	6.5	1-12,3473-3462;13-20,3460-3453	x-x,3461-3461[BULt];21-21,3452-3452[UP3]	.((((((((.((((((((((((&))))))))))))-)))))))).	AAUAUUCUGUUAUAAUAAUGGU&AUUAUUGUUAUA-UAGAAUAUG	2	0.735981981193582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN7277_c0_g1_3464_TPlot.pdf
TRINITY_DN7277_c0_g1:3465	si_a478	TRINITY_DN7277_c0_g1	3453	3474	3465	-21.30	-16.10	0.755868544600939	5.5	2-13,3473-3462;14-21,3460-3453	1-1,3474-3474[UP5];x-x,3461-3461[BULt]	((((((((.((((((((((((.&.))))))))))))-))))))))	AUAUUCUGUUAUAAUAAUGGUG&AAUUAUUGUUAUA-UAGAAUAU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN7277_c0_g1_3465_TPlot.pdf
TRINITY_DN7277_c0_g1:3466	si_a477	TRINITY_DN7277_c0_g1	3454	3475	3466	-21.50	-14.90	0.693023255813954	7.5	3-14,3473-3462;15-21,3460-3454	1-2,3475-3474[UP5];x-x,3461-3461[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	UAUUCUGUUAUAAUAAUGGUGU&UAAUUAUUGUUAUA-UAGAAUA	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN7277_c0_g1_3466_TPlot.pdf
TRINITY_DN7278_c0_g1:1765	si_a403	TRINITY_DN7278_c0_g1	1754	1774	1765	-22.00	-15.00	0.681818181818182	9	1-15,1774-1760	16-21,1759-1754[UP3]	......(((((((((((((((&)))))))))))))))......	GAAGAAAAACGAAAUAGUUCU&AGAAUUGUUUUGUUUAUAUUU	3	0.999999999026339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7278_c0_g1_1765_TPlot.pdf
TRINITY_DN7278_c0_g1:1767	si_a401	TRINITY_DN7278_c0_g1	1756	1776	1767	-22.60	-16.30	0.721238938053097	7.5	2-17,1775-1760	1-1,1776-1776[UP5];18-21,1759-1756[UP3]	....((((((((((((((((.&.))))))))))))))))....	AGAAAAACGAAAUAGUUCUAG&AUAGAAUUGUUUUGUUUAUAU	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN7278_c0_g1_1767_TPlot.pdf
TRINITY_DN7278_c0_g1:2011	si_s608	TRINITY_DN7278_c0_g1	2000	2019	2011	-26.70	-18.90	0.707865168539326	7	1-4,2019-2016;6-18,2015-2003	5-5,x-x[BULq];19-21,2002-2000[UP3]	...(((((((((((((-((((&)))).)))))))))))))...	UGAGGAUUUGAAAGAG-UUCG&CGAAUCUUUUUUAAAUCCAAG	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s608_TRINITY_DN7278_c0_g1_2011_TPlot.pdf
TRINITY_DN7278_c0_g1:2012	si_s607	TRINITY_DN7278_c0_g1	2001	2020	2012	-27.60	-21.00	0.760869565217391	6	1-5,2020-2016;7-19,2015-2003	6-6,x-x[BULq];20-21,2002-2001[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	GAGGAUUUGAAAGAG-UUCGU&GCGAAUCUUUUUUAAAUCCAA	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN7278_c0_g1_2012_TPlot.pdf
TRINITY_DN7278_c0_g1:2013	si_s606	TRINITY_DN7278_c0_g1	2002	2021	2013	-28.20	-21.20	0.75177304964539	6.5	2-6,2020-2016;8-20,2015-2003	1-1,2021-2021[UP5];7-7,x-x[BULq];21-21,2002-2002[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	AGGAUUUGAAAGAG-UUCGUA&AGCGAAUCUUUUUUAAAUCCA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN7278_c0_g1_2013_TPlot.pdf
TRINITY_DN7278_c0_g1:2014	si_s605	TRINITY_DN7278_c0_g1	2003	2022	2014	-27.50	-20.70	0.752727272727273	7.5	3-7,2020-2016;9-21,2015-2003	1-2,2022-2021[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GGAUUUGAAAGAG-UUCGUAC&AAGCGAAUCUUUUUUAAAUCC	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN7278_c0_g1_2014_TPlot.pdf
TRINITY_DN7278_c0_g1:2051	si_s80	TRINITY_DN7278_c0_g1	2039	2060	2051	-28.20	-18.90	0.670212765957447	8.5	1-12,2060-2049;14-18,2046-2042	13-13,2048-2047[AILt];19-21,2041-2039[UP3]	...(((((..((((((((((((&))))))))))))-.)))))...	UCUGAAGGCUGGGAAAGAAGAA&UUUUUCUUUCCU-UUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7278_c0_g1_2051_TPlot.pdf
TRINITY_DN7278_c0_g1:2052	si_s79	TRINITY_DN7278_c0_g1	2040	2061	2052	-26.20	-19.00	0.725190839694656	7	2-13,2060-2049;15-19,2046-2042	1-1,2061-2061[UP5];14-14,2048-2047[AILt];20-21,2041-2040[UP3]	..(((((..((((((((((((.&.))))))))))))-.)))))..	CUGAAGGCUGGGAAAGAAGAAC&UUUUUUCUUUCCU-UUCUUCUU	2	0.999999999978084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7278_c0_g1_2052_TPlot.pdf
TRINITY_DN7278_c0_g1:2054	si_s77	TRINITY_DN7278_c0_g1	2042	2063	2054	-25.50	-18.60	0.729411764705882	9	4-15,2060-2049;17-21,2046-2042	1-3,2063-2061[UP5];16-16,2048-2047[AILt]	(((((..((((((((((((...&...))))))))))))-.)))))	GAAGGCUGGGAAAGAAGAACUU&UUUUUUUUCUUUCCU-UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7278_c0_g1_2054_TPlot.pdf
TRINITY_DN7278_c0_g1:2058	si_s73	TRINITY_DN7278_c0_g1	2047	2067	2058	-24.00	-16.68	0.695	9.5	1-4,2067-2064;8-19,2060-2049	5-7,2063-2061[SIL];20-21,2048-2047[UP3]	..((((((((((((...((((&))))...))))))))))))..	CUGGGAAAGAAGAACUUUAGA&UCUAUUUUUUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7278_c0_g1_2058_TPlot.pdf
TRINITY_DN7278_c0_g1:2060	si_s71	TRINITY_DN7278_c0_g1	2049	2069	2060	-25.70	-17.78	0.691828793774319	8.5	2-6,2068-2064;10-21,2060-2049	1-1,2069-2069[UP5];7-9,2063-2061[SIL]	((((((((((((...(((((.&.)))))...))))))))))))	GGGAAAGAAGAACUUUAGAAA&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999998354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN7278_c0_g1_2060_TPlot.pdf
TRINITY_DN7279_c0_g1:557	si_s501	TRINITY_DN7279_c0_g1	546	566	557	-22.60	-15.16	0.670796460176991	9.5	1-6,566-561;11-21,556-546	7-10,560-557[SIL]	(((((((((((....((((((&))))))....)))))))))))	AUAUGGGGUUGGAUGGUUUAU&AUAAACAAAACAAUUCUAUAU	4	0.917728081835629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s501_TRINITY_DN7279_c0_g1_557_TPlot.pdf
TRINITY_DN7279_c0_g1:558	si_s500	TRINITY_DN7279_c0_g1	547	567	558	-22.80	-15.26	0.669298245614035	9.5	1-7,567-561;12-21,556-547	8-11,560-557[SIL]	((((((((((....(((((((&)))))))....))))))))))	UAUGGGGUUGGAUGGUUUAUA&UAUAAACAAAACAAUUCUAUA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s500_TRINITY_DN7279_c0_g1_558_TPlot.pdf
TRINITY_DN7280_c0_g1:586	si_a783	TRINITY_DN7280_c0_g1	575	594	586	-24.70	-17.20	0.696356275303644	9	3-6,592-589;8-19,588-577	1-2,594-593[UP5];7-7,x-x[BULq];20-21,576-575[UP3]	..((((((((((((-((((..&..)))).))))))))))))..	AUGUGGAAAAGUAG-AGAGCA&AACUCUUCUAUUUUUCUAUUU	4	0.999999997672781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7280_c0_g1_586_TPlot.pdf
TRINITY_DN7280_c0_g1:642	si_a119	TRINITY_DN7280_c0_g1	631	651	642	-30.30	-19.80	0.653465346534653	9	2-18,650-634	1-1,651-651[UP5];19-21,633-631[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GUAUGCUAUGGAAUAAGUUUU&CGAGCUUGUUUUAUAGCAAUA	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN7280_c0_g1_642_TPlot.pdf
TRINITY_DN7280_c0_g1:968	si_s441	TRINITY_DN7280_c0_g1	957	977	968	-23.20	-15.10	0.650862068965517	7	1-4,977-974;7-19,971-959	5-6,973-972[SIL];20-21,958-957[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	UCUGUUGUGUAUAAUUAGUAA&UUACAUAUUAUAUAUAACAAC	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN7280_c0_g1_968_TPlot.pdf
TRINITY_DN7280_c0_g1:969	si_s440	TRINITY_DN7280_c0_g1	958	978	969	-21.60	-15.10	0.699074074074074	7	2-5,977-974;8-20,971-959	1-1,978-978[UP5];6-7,973-972[SIL];21-21,958-958[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	CUGUUGUGUAUAAUUAGUAAA&AUUACAUAUUAUAUAUAACAA	3	0.96665904167781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN7280_c0_g1_969_TPlot.pdf
TRINITY_DN7280_c0_g1:970	si_s439	TRINITY_DN7280_c0_g1	959	979	970	-21.50	-14.80	0.688372093023256	8	3-6,977-974;9-21,971-959	1-2,979-978[UP5];7-8,973-972[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	UGUUGUGUAUAAUUAGUAAAC&AAUUACAUAUUAUAUAUAACA	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN7280_c0_g1_970_TPlot.pdf
TRINITY_DN7287_c2_g1:203	si_a20	TRINITY_DN7287_c2_g1	192	213	203	-26.70	-17.72	0.663670411985019	12.5	1-6,213-208;10-19,203-194	7-9,207-204[AILt];20-21,193-192[UP3]	..((((((((((....((((((&))))))-...))))))))))..	UUGGGCUGAAAAGUUCGUAGGC&GCCUAU-UUAUUUUUAGUUCUA	4	0.999999829576798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7287_c2_g1_203_TPlot.pdf
TRINITY_DN7290_c0_g1:3073	si_a899	TRINITY_DN7290_c0_g1	3062	3082	3073	-18.70	-13.20	0.705882352941176	10	3-16,3080-3067	1-2,3082-3081[UP5];17-21,3066-3062[UP3]	.....((((((((((((((..&..)))))))))))))).....	GUGGAAUAUUACUUGUUGUCA&UAAUAAUAAGUAAUAUAAAAA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN7290_c0_g1_3073_TPlot.pdf
TRINITY_DN7290_c0_g1:3074	si_a898	TRINITY_DN7290_c0_g1	3063	3083	3074	-20.50	-14.30	0.697560975609756	8	1-2,3083-3082;4-17,3080-3067	3-3,3081-3081[SIL];18-21,3066-3063[UP3]	....((((((((((((((.((&)).))))))))))))))....	UGGAAUAUUACUUGUUGUCAC&GUAAUAAUAAGUAAUAUAAAA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN7290_c0_g1_3074_TPlot.pdf
TRINITY_DN7293_c0_g1:1836	si_s81	TRINITY_DN7293_c0_g1	1826	1845	1836	-28.90	-21.20	0.73356401384083	5.5	1-16,1845-1830;19-20,1828-1827	17-18,1829-1829[AILq];21-21,1826-1826[UP3]	.((.-((((((((((((((((&))))))))))))))))..)).	UGAU-GAGAAAGGAGAGAAGA&UUUUCUUUCCUUUCUUCUUCU	3	0.999999999995159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7293_c0_g1_1836_TPlot.pdf
TRINITY_DN7293_c0_g1:511	si_s86	TRINITY_DN7293_c0_g1	500	520	511	-32.90	-22.00	0.668693009118541	7	2-17,519-504	1-1,520-520[UP5];18-21,503-500[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUAUAAGAAGAAGGAGGGAAC&UUUCCUUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7293_c0_g1_511_TPlot.pdf
TRINITY_DN7293_c0_g1:514	si_s83	TRINITY_DN7293_c0_g1	503	523	514	-30.90	-22.00	0.711974110032362	10	5-20,519-504	1-4,523-520[UP5];21-21,503-503[UP3]	.((((((((((((((((....&....)))))))))))))))).	UAAGAAGAAGGAGGGAACCAC&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999997711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7293_c0_g1_514_TPlot.pdf
TRINITY_DN7293_c0_g1:515	si_s82	TRINITY_DN7293_c0_g1	504	524	515	-28.90	-22.00	0.761245674740484	11	6-21,519-504	1-5,524-520[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGAAGAAGGAGGGAACCACC&UUUCUUUCCUUUCUUCUUCUU	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7293_c0_g1_515_TPlot.pdf
TRINITY_DN7299_c0_g1:304	si_s806	TRINITY_DN7299_c0_g1	293	314	304	-28.60	-21.50	0.751748251748252	6.5	1-6,314-309;7-11,307-303;13-21,301-293	x-x,308-308[BULt];12-12,302-302[SIL]	(((((((((.(((((.((((((&))))))-))))).)))))))))	GGGAGAAGGCGACGAUAGAUAA&UUAUCU-UCGUUACCUUUUCUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN7299_c0_g1_304_TPlot.pdf
TRINITY_DN7299_c0_g1:307	si_s803	TRINITY_DN7299_c0_g1	296	317	307	-26.00	-19.10	0.734615384615385	6	1-9,317-309;10-14,307-303;16-21,301-296	x-x,308-308[BULt];15-15,302-302[SIL]	((((((.(((((.(((((((((&)))))))))-))))).))))))	AGAAGGCGACGAUAGAUAAGGU&AUUUUAUCU-UCGUUACCUUUU	2	0.984345763725476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN7299_c0_g1_307_TPlot.pdf
TRINITY_DN729_c0_g1:224	si_s803	TRINITY_DN729_c0_g1	213	233	224	-26.00	-19.30	0.742307692307692	10	4-13,230-221;15-19,219-215	1-3,233-231[UP5];14-14,220-220[SIL];20-21,214-213[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	GUGAGGUCGCGAAGAUGAUUU&AUUUUAUCUUCGUUACCUUUU	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN729_c0_g1_224_TPlot.pdf
TRINITY_DN729_c0_g1:230	si_s526	TRINITY_DN729_c0_g1	217	239	230	-25.60	-16.80	0.65625	10.5	5-17,235-223;18-21,220-217	1-4,239-236[UP5];x-x,222-221[BULt]	((((..(((((((((((((....&....)))))))))))))--))))	GGUCGCGAAGAUGAUUUCGCAAG&AAUUCGAAAUCAUUUUU--GAUC	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN729_c0_g1_230_TPlot.pdf
TRINITY_DN729_c0_g1:529	si_a569	TRINITY_DN729_c0_g1	514	538	529	-34.20	-22.40	0.654970760233918	15	1-11,538-528;12-18,523-517	x-x,527-524[BULt];19-21,516-514[UP3]	...(((((((....(((((((((((&)))))))))))----)))))))...	CCGAGACGUGAUUUCGGUUCGCGGG&CCCGUGAAUCG----UAUGUUUGUA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN729_c0_g1_529_TPlot.pdf
TRINITY_DN729_c0_g1:54	si_a218	TRINITY_DN729_c0_g1	43	63	54	-26.60	-17.60	0.661654135338346	16.5	9-20,55-44	1-8,63-56[UP5];21-21,43-43[UP3]	.((((((((((((........&........)))))))))))).	GAGAAGCAUGAGUGGUGAACG&CUAAUUAAACUCAUGUUUCUA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN729_c0_g1_54_TPlot.pdf
TRINITY_DN72_c0_g1:1001	si_s696	TRINITY_DN72_c0_g1	990	1010	1001	-26.30	-18.20	0.692015209125475	12	5-20,1006-991	1-4,1010-1007[UP5];21-21,990-990[UP3]	.((((((((((((((((....&....)))))))))))))))).	AACUGGUAAAUUGGCUGGAGC&UAAUUAGUCGAUUUAUUAGUG	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN72_c0_g1_1001_TPlot.pdf
TRINITY_DN72_c0_g1:1003	si_s694	TRINITY_DN72_c0_g1	992	1012	1003	-23.90	-16.50	0.690376569037657	15	7-21,1006-992	1-6,1012-1007[UP5]	(((((((((((((((......&......)))))))))))))))	CUGGUAAAUUGGCUGGAGCUG&UUUAAUUAGUCGAUUUAUUAG	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN72_c0_g1_1003_TPlot.pdf
TRINITY_DN72_c0_g1:1296	si_s731	TRINITY_DN72_c0_g1	1286	1305	1296	-34.30	-22.70	0.661807580174927	6	1-7,1305-1299;9-10,1297-1296;12-13,1294-1293;15-21,1292-1286	8-8,1298-1298[SIL];11-11,1295-1295[SIL];14-14,x-x[BULq]	(((((((-((.((.(((((((&))))))).)).)).)))))))	UCUAUUC-CCGGUGUAGAUGA&UUAUCUAGACGGGUGAAUAGA	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s731_TRINITY_DN72_c0_g1_1296_TPlot.pdf
TRINITY_DN72_c0_g1:1443	si_a74	TRINITY_DN72_c0_g1	1432	1452	1443	-22.20	-14.60	0.657657657657658	8.5	1-3,1452-1450;6-16,1447-1437;18-20,1435-1433	4-5,1449-1448[SIL];17-17,1436-1436[SIL];21-21,1432-1432[UP3]	.(((.(((((((((((..(((&)))..))))))))))).))).	AGGUCGUGAAGAACAAGCUGA&UCAAAUUGUUUUUCAUUAUUA	3	0.99999999995512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN72_c0_g1_1443_TPlot.pdf
TRINITY_DN72_c0_g1:1444	si_a73	TRINITY_DN72_c0_g1	1433	1453	1444	-21.90	-14.90	0.680365296803653	9.5	1-4,1453-1450;7-17,1447-1437	5-6,1449-1448[SIL];18-21,1436-1433[UP3]	....(((((((((((..((((&))))..)))))))))))....	GGUCGUGAAGAACAAGCUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.999999997035464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN72_c0_g1_1444_TPlot.pdf
TRINITY_DN72_c0_g1:2451	si_a702	TRINITY_DN72_c0_g1	2439	2460	2451	-30.80	-20.20	0.655844155844156	7	1-8,2460-2453;10-13,2451-2448;14-17,2446-2443	9-9,2452-2452[SIL];x-x,2447-2447[BULt];18-21,2442-2439[UP3]	....((((.((((.((((((((&)))))))).))))-))))....	UCACUUGGUAAUGCACCAGUUG&CAACUGGUACAUU-CCAAAAUA	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN72_c0_g1_2451_TPlot.pdf
TRINITY_DN72_c0_g1:292	si_s77	TRINITY_DN72_c0_g1	281	301	292	-25.50	-17.00	0.666666666666667	8	2-17,300-285	1-1,301-301[UP5];18-21,284-281[UP3]	....((((((((((((((((.&.))))))))))))))))....	UCCUGGAGGAGAGGAAAAAAC&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN72_c0_g1_292_TPlot.pdf
TRINITY_DN72_c0_g1:294	si_s75	TRINITY_DN72_c0_g1	283	303	294	-24.00	-17.00	0.708333333333333	9.5	4-19,300-285	1-3,303-301[UP5];20-21,284-283[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUGGAGGAGAGGAAAAAACGU&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN72_c0_g1_294_TPlot.pdf
TRINITY_DN72_c0_g1:295	si_s74	TRINITY_DN72_c0_g1	284	304	295	-25.00	-17.00	0.68	10.5	5-20,300-285	1-4,304-301[UP5];21-21,284-284[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGAGGAGAGGAAAAAACGUU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN72_c0_g1_295_TPlot.pdf
TRINITY_DN72_c0_g1:296	si_s73	TRINITY_DN72_c0_g1	285	305	296	-24.00	-17.00	0.708333333333333	11.5	6-21,300-285	1-5,305-301[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGGAGAGGAAAAAACGUUU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN72_c0_g1_296_TPlot.pdf
TRINITY_DN72_c0_g1:297	si_s72	TRINITY_DN72_c0_g1	286	306	297	-24.10	-16.70	0.692946058091286	12.5	7-21,300-286	1-6,306-301[UP5]	(((((((((((((((......&......)))))))))))))))	GAGGAGAGGAAAAAACGUUUA&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN72_c0_g1_297_TPlot.pdf
TRINITY_DN72_c0_g1:3049	si_s898	TRINITY_DN72_c0_g1	3038	3058	3049	-30.70	-20.20	0.657980456026059	8	2-14,3057-3045	1-1,3058-3058[UP5];15-21,3044-3038[UP3]	.......(((((((((((((.&.))))))))))))).......	GCUAAACUUGAAGAGAAAGCA&GGCUUUCUCUUCAAUUUCAAU	3	0.999999993201385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN72_c0_g1_3049_TPlot.pdf
TRINITY_DN72_c0_g1:3053	si_s894	TRINITY_DN72_c0_g1	3042	3062	3053	-29.10	-20.20	0.694158075601375	12	6-18,3057-3045	1-5,3062-3058[UP5];19-21,3044-3042[UP3]	...(((((((((((((.....&.....)))))))))))))...	AACUUGAAGAGAAAGCACAAA&AAUAGGCUUUCUCUUCAAUUU	3	0.999937263402404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN72_c0_g1_3053_TPlot.pdf
TRINITY_DN72_c0_g1:3054	si_s893	TRINITY_DN72_c0_g1	3043	3063	3054	-29.10	-20.20	0.694158075601375	13	7-19,3057-3045	1-6,3063-3058[UP5];20-21,3044-3043[UP3]	..(((((((((((((......&......)))))))))))))..	ACUUGAAGAGAAAGCACAAAA&AAAUAGGCUUUCUCUUCAAUU	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN72_c0_g1_3054_TPlot.pdf
TRINITY_DN72_c0_g1:3055	si_s892	TRINITY_DN72_c0_g1	3044	3064	3055	-29.50	-20.20	0.684745762711864	14	8-20,3057-3045	1-7,3064-3058[UP5];21-21,3044-3044[UP3]	.(((((((((((((.......&.......))))))))))))).	CUUGAAGAGAAAGCACAAAAG&UAAAUAGGCUUUCUCUUCAAU	3	0.999730517630902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN72_c0_g1_3055_TPlot.pdf
TRINITY_DN72_c0_g1:3057	si_s890	TRINITY_DN72_c0_g1	3046	3066	3057	-29.50	-19.20	0.650847457627119	17	10-21,3057-3046	1-9,3066-3058[UP5]	((((((((((((.........&.........))))))))))))	UGAAGAGAAAGCACAAAAGGC&AAUAAAUAGGCUUUCUCUUCA	3	0.999999158860227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN72_c0_g1_3057_TPlot.pdf
TRINITY_DN72_c0_g1:3088	si_s898	TRINITY_DN72_c0_g1	3077	3097	3088	-30.70	-24.20	0.788273615635179	6	1-13,3097-3085;16-18,3082-3080	14-15,3084-3083[SIL];19-21,3079-3077[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	UUCGAACGUGAAGAGAAGGCC&GGCUUUCUCUUCAAUUUCAAU	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN72_c0_g1_3088_TPlot.pdf
TRINITY_DN72_c0_g1:3089	si_s897	TRINITY_DN72_c0_g1	3078	3098	3089	-31.30	-24.30	0.776357827476038	6	2-14,3097-3085;17-19,3082-3080	1-1,3098-3098[UP5];15-16,3084-3083[SIL];20-21,3079-3078[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	UCGAACGUGAAGAGAAGGCCA&AGGCUUUCUCUUCAAUUUCAA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN72_c0_g1_3089_TPlot.pdf
TRINITY_DN72_c0_g1:3090	si_s896	TRINITY_DN72_c0_g1	3079	3099	3090	-31.60	-24.30	0.768987341772152	7	3-15,3097-3085;18-20,3082-3080	1-2,3099-3098[UP5];16-17,3084-3083[SIL];21-21,3079-3079[UP3]	.(((..(((((((((((((..&..)))))))))))))..))).	CGAACGUGAAGAGAAGGCCAA&UAGGCUUUCUCUUCAAUUUCA	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN72_c0_g1_3090_TPlot.pdf
TRINITY_DN72_c0_g1:3091	si_s895	TRINITY_DN72_c0_g1	3080	3100	3091	-31.10	-23.90	0.768488745980707	8	4-16,3097-3085;19-21,3082-3080	1-3,3100-3098[UP5];17-18,3084-3083[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	GAACGUGAAGAGAAGGCCAAG&AUAGGCUUUCUCUUCAAUUUC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN72_c0_g1_3091_TPlot.pdf
TRINITY_DN72_c0_g1:3092	si_s894	TRINITY_DN72_c0_g1	3081	3101	3092	-29.10	-22.40	0.769759450171821	12	5-17,3097-3085	1-4,3101-3098[UP5];18-21,3084-3081[UP3]	....(((((((((((((....&....)))))))))))))....	AACGUGAAGAGAAGGCCAAGA&AAUAGGCUUUCUCUUCAAUUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN72_c0_g1_3092_TPlot.pdf
TRINITY_DN72_c0_g1:3093	si_s893	TRINITY_DN72_c0_g1	3082	3102	3093	-29.10	-22.40	0.769759450171821	13	6-18,3097-3085	1-5,3102-3098[UP5];19-21,3084-3082[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACGUGAAGAGAAGGCCAAGAA&AAAUAGGCUUUCUCUUCAAUU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN72_c0_g1_3093_TPlot.pdf
TRINITY_DN72_c0_g1:3096	si_s890	TRINITY_DN72_c0_g1	3085	3105	3096	-29.50	-22.20	0.752542372881356	16	9-21,3097-3085	1-8,3105-3098[UP5]	(((((((((((((........&........)))))))))))))	UGAAGAGAAGGCCAAGAAGGA&AAUAAAUAGGCUUUCUCUUCA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN72_c0_g1_3096_TPlot.pdf
TRINITY_DN72_c0_g1:3279	si_a732	TRINITY_DN72_c0_g1	3269	3288	3279	-45.40	-30.50	0.671806167400881	7	1-11,3288-3278;15-20,3275-3270	12-14,3277-3276[AILq];21-21,3269-3269[UP3]	.((((((..-(((((((((((&)))))))))))...)))))).	AGCCAGGAA-GAGGAUGCCCG&CGGGCAUCUUUACCCCUGGCC	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a732_TRINITY_DN72_c0_g1_3279_TPlot.pdf
TRINITY_DN72_c0_g1:3280	si_a731	TRINITY_DN72_c0_g1	3270	3289	3280	-44.00	-30.50	0.693181818181818	6	2-12,3288-3278;16-21,3275-3270	1-1,3289-3289[UP5];13-15,3277-3276[AILq]	((((((..-(((((((((((.&.)))))))))))...))))))	GCCAGGAA-GAGGAUGCCCGU&UCGGGCAUCUUUACCCCUGGC	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a731_TRINITY_DN72_c0_g1_3280_TPlot.pdf
TRINITY_DN72_c0_g1:4045	si_s633	TRINITY_DN72_c0_g1	4034	4053	4045	-37.90	-24.70	0.651715039577836	7.5	2-7,4052-4047;9-19,4046-4036	1-1,4053-4053[UP5];8-8,x-x[BULq];20-21,4035-4034[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	UCGGCGAACGUCU-CGAAGAA&CUUUUCGUAGGCGUUUGCCCU	3	0.999991015199563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN72_c0_g1_4045_TPlot.pdf
TRINITY_DN72_c0_g1:4047	si_s631	TRINITY_DN72_c0_g1	4036	4055	4047	-36.00	-24.70	0.686111111111111	9	4-9,4052-4047;11-21,4046-4036	1-3,4055-4053[UP5];10-10,x-x[BULq]	(((((((((((-((((((...&...)))))).)))))))))))	GGCGAACGUCU-CGAAGAAGC&AUCUUUUCGUAGGCGUUUGCC	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN72_c0_g1_4047_TPlot.pdf
TRINITY_DN72_c0_g1:4616	si_s205	TRINITY_DN72_c0_g1	4604	4627	4616	-34.90	-23.40	0.670487106017192	9	1-6,4627-4622;8-10,4618-4616;11-21,4614-4604	7-7,4621-4619[AILt];x-x,4615-4615[BULt]	(((((((((((.(((...((((((&))))))--.)))-)))))))))))	UUGAACACGACUUGGACAACAUUC&GAAUGU--ACCA-GUUGUGUUCGA	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN72_c0_g1_4616_TPlot.pdf
TRINITY_DN72_c0_g1:5200	si_s612	TRINITY_DN72_c0_g1	5189	5210	5200	-28.20	-18.92	0.670921985815603	12	1-8,5210-5203;12-19,5198-5191	9-11,5202-5199[AILt];20-21,5190-5189[UP3]	..((((((((....((((((((&))))))))-...))))))))..	AACGCUUGGAAGCCGAGAAAGA&UCUUUUUU-AAAUCCAAGCGAU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN72_c0_g1_5200_TPlot.pdf
TRINITY_DN72_c0_g1:5201	si_s611	TRINITY_DN72_c0_g1	5190	5211	5201	-28.20	-20.22	0.717021276595745	11	1-9,5211-5203;13-20,5198-5191	10-12,5202-5199[AILt];21-21,5190-5190[UP3]	.((((((((....(((((((((&)))))))))-...)))))))).	ACGCUUGGAAGCCGAGAAAGAU&AUCUUUUUU-AAAUCCAAGCGA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN72_c0_g1_5201_TPlot.pdf
TRINITY_DN72_c0_g1:5339	si_s72	TRINITY_DN72_c0_g1	5327	5349	5339	-24.10	-15.80	0.655601659751037	8	1-3,5349-5347;5-18,5344-5331;19-21,5329-5327	4-4,5346-5345[AILt];x-x,5330-5330[BULt]	(((.((((((((((((((..(((&)))-.))))))))))))))-)))	AAGAGAAAGAGGAAGAAUUUGAA&UUC-UAUUUUUUUUCUUUC-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN72_c0_g1_5339_TPlot.pdf
TRINITY_DN72_c0_g1:5855	si_s896	TRINITY_DN72_c0_g1	5843	5864	5855	-31.60	-22.12	0.7	8	3-14,5862-5851;18-20,5846-5844	1-2,5864-5863[UP5];15-17,5850-5847[AILt];21-21,5843-5843[UP3]	.(((....((((((((((((..&..))))))))))))-...))).	AGAAUUCCGAAGAGAAAGCCAA&UAGGCUUUCUCUUC-AAUUUCA	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN72_c0_g1_5855_TPlot.pdf
TRINITY_DN72_c0_g1:5856	si_s895	TRINITY_DN72_c0_g1	5845	5865	5856	-31.10	-21.80	0.70096463022508	11	4-15,5862-5851	1-3,5865-5863[UP5];16-21,5850-5845[UP3]	......((((((((((((...&...))))))))))))......	AAUUCCGAAGAGAAAGCCAAG&AUAGGCUUUCUCUUCAAUUUC	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN72_c0_g1_5856_TPlot.pdf
TRINITY_DN72_c0_g1:5857	si_s894	TRINITY_DN72_c0_g1	5846	5866	5857	-29.10	-21.80	0.74914089347079	12	5-16,5862-5851	1-4,5866-5863[UP5];17-21,5850-5846[UP3]	.....((((((((((((....&....)))))))))))).....	AUUCCGAAGAGAAAGCCAAGA&AAUAGGCUUUCUCUUCAAUUU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN72_c0_g1_5857_TPlot.pdf
TRINITY_DN72_c0_g1:5858	si_s893	TRINITY_DN72_c0_g1	5847	5867	5858	-29.10	-21.80	0.74914089347079	13	6-17,5862-5851	1-5,5867-5863[UP5];18-21,5850-5847[UP3]	....((((((((((((.....&.....))))))))))))....	UUCCGAAGAGAAAGCCAAGAA&AAAUAGGCUUUCUCUUCAAUU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN72_c0_g1_5858_TPlot.pdf
TRINITY_DN72_c0_g1:6247	si_a786	TRINITY_DN72_c0_g1	6236	6257	6247	-26.60	-19.10	0.718045112781955	6.5	1-6,6257-6252;8-18,6249-6239;20-21,6237-6236	7-7,6251-6250[AILt];19-19,6238-6238[SIL]	((.(((((((((((..((((((&))))))-.))))))))))).))	GGCAGAUAGAAGAAGCAGAAGA&UCUUCU-AUUUUUCUAUUUUCC	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN72_c0_g1_6247_TPlot.pdf
TRINITY_DN72_c0_g1:6249	si_a784	TRINITY_DN72_c0_g1	6238	6259	6249	-24.70	-16.30	0.659919028340081	9.5	3-8,6257-6252;10-20,6249-6239	1-2,6259-6258[UP5];9-9,6251-6250[AILt];21-21,6238-6238[UP3]	.(((((((((((..((((((..&..))))))-.))))))))))).	CAGAUAGAAGAAGCAGAAGAAA&ACUCUUCU-AUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN72_c0_g1_6249_TPlot.pdf
TRINITY_DN72_c0_g1:6732	si_s440	TRINITY_DN72_c0_g1	6721	6745	6732	-21.60	-14.70	0.680555555555555	11	2-9,6744-6737;10-19,6732-6723	1-1,6745-6745[UP5];x-x,6736-6733[BULt];20-21,6722-6721[UP3]	..((((((((((....((((((((.&.))))))))----))))))))))..	CCGUUAUAUAUAUUGUAUAUGUAAG&AUUACAUAU----UAUAUAUAACAA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN72_c0_g1_6732_TPlot.pdf
TRINITY_DN72_c0_g1:6737	si_s439	TRINITY_DN72_c0_g1	6722	6746	6737	-21.50	-14.70	0.683720930232558	12	3-10,6744-6737;11-20,6732-6723	1-2,6746-6745[UP5];x-x,6736-6733[BULt];21-21,6722-6722[UP3]	.((((((((((....((((((((..&..))))))))----)))))))))).	CGUUAUAUAUAUUGUAUAUGUAAGA&AAUUACAUAU----UAUAUAUAACA	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN72_c0_g1_6737_TPlot.pdf
TRINITY_DN72_c0_g1:6738	si_s438	TRINITY_DN72_c0_g1	6723	6747	6738	-21.20	-14.30	0.674528301886792	13	4-11,6744-6737;12-21,6732-6723	1-3,6747-6745[UP5];x-x,6736-6733[BULt]	((((((((((....((((((((...&...))))))))----))))))))))	GUUAUAUAUAUUGUAUAUGUAAGAG&UAAUUACAUAU----UAUAUAUAAC	2	0.94829410197267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN72_c0_g1_6738_TPlot.pdf
TRINITY_DN72_c0_g1:6763	si_s82	TRINITY_DN72_c0_g1	6751	6776	6763	-28.90	-19.60	0.678200692041523	12	1-5,6776-6772;6-13,6767-6760;14-21,6758-6751	x-x,6771-6768[BULt];x-x,6759-6759[BULt]	((((((((.((((((((....(((((&)))))----))))))))-))))))))	AGGGAGAACGAAGGGAAUUUCAGAGA&UUUCU----UUCCUUUC-UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN72_c0_g1_6763_TPlot.pdf
TRINITY_DN72_c0_g1:6764	si_s81	TRINITY_DN72_c0_g1	6752	6777	6764	-28.90	-19.10	0.660899653979239	13	2-6,6776-6772;7-14,6767-6760;15-21,6758-6752	1-1,6777-6777[UP5];x-x,6771-6768[BULt];x-x,6759-6759[BULt]	(((((((.((((((((....(((((.&.)))))----))))))))-)))))))	GGGAGAACGAAGGGAAUUUCAGAGAC&UUUUCU----UUCCUUUC-UUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN72_c0_g1_6764_TPlot.pdf
TRINITY_DN7300_c0_g1:872	si_s818	TRINITY_DN7300_c0_g1	861	883	872	-23.70	-15.60	0.658227848101266	9.5	1-8,883-876;9-18,873-864	x-x,875-874[BULt];19-21,863-861[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	UUGUUUAUUAUUGAUGGAAAAGG&CCUUUUCU--UAAUAAUGAAAAA	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN7300_c0_g1_872_TPlot.pdf
TRINITY_DN7302_c0_g1:1356	si_a794	TRINITY_DN7302_c0_g1	1345	1364	1356	-28.60	-19.40	0.678321678321678	11	1-7,1364-1358;11-19,1355-1347	8-10,1357-1356[AILq];20-21,1346-1345[UP3]	..(((((((((..-(((((((&)))))))...)))))))))..	GACGGAUUGGAUC-UGGAGGA&UUUUCUAUUUUCCAAUCCGAA	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN7302_c0_g1_1356_TPlot.pdf
TRINITY_DN7302_c0_g1:1357	si_a793	TRINITY_DN7302_c0_g1	1346	1365	1357	-28.50	-20.10	0.705263157894737	10	1-8,1365-1358;12-20,1355-1347	9-11,1357-1356[AILq];21-21,1346-1346[UP3]	.(((((((((..-((((((((&))))))))...))))))))).	ACGGAUUGGAUC-UGGAGGAA&UUUUUCUAUUUUCCAAUCCGA	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7302_c0_g1_1357_TPlot.pdf
TRINITY_DN7302_c0_g1:473	si_a625	TRINITY_DN7302_c0_g1	462	482	473	-30.60	-20.88	0.68235294117647	10	2-8,481-475;12-20,471-463	1-1,482-482[UP5];9-11,474-472[SIL];21-21,462-462[UP3]	.(((((((((...(((((((.&.)))))))...))))))))).	CAAGUCGAUAGUUUGCGCCUU&UAGGCGUAUUAUGUCGAUUUU	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN7302_c0_g1_473_TPlot.pdf
TRINITY_DN7302_c0_g1:559	si_a496	TRINITY_DN7302_c0_g1	547	568	559	-32.40	-23.90	0.737654320987654	7.5	4-13,565-556;14-21,554-547	1-3,568-566[UP5];x-x,555-555[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AGGAAGGCAGAAAAACGAUCUU&UAUGUCGUUUUUC-GUCUUCCU	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN7302_c0_g1_559_TPlot.pdf
TRINITY_DN7302_c0_g1:561	si_a494	TRINITY_DN7302_c0_g1	549	570	561	-29.50	-19.30	0.654237288135593	11.5	6-15,565-556;16-21,554-549	1-5,570-566[UP5];x-x,555-555[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	GAAGGCAGAAAAACGAUCUUUG&AAUAUGUCGUUUUUC-GUCUUC	3	0.999999999999972	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN7302_c0_g1_561_TPlot.pdf
TRINITY_DN7307_c0_g1:225	si_s74	TRINITY_DN7307_c0_g1	213	234	225	-25.00	-16.90	0.676	8.5	1-6,234-229;8-10,227-225;11-20,223-214	7-7,228-228[SIL];x-x,224-224[BULt];21-21,213-213[UP3]	.((((((((((.(((.((((((&)))))).)))-)))))))))).	AAAAGGAGAGGUAGAUAGAUAG&CUAUUUUUUU-UCUUUCCUUUC	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7307_c0_g1_225_TPlot.pdf
TRINITY_DN7307_c0_g1:229	si_a786	TRINITY_DN7307_c0_g1	217	238	229	-26.60	-19.00	0.714285714285714	8	2-10,237-229;12-16,227-223;17-21,221-217	1-1,238-238[UP5];11-11,228-228[SIL];x-x,222-222[BULt]	(((((.(((((.(((((((((.&.))))))))).)))))-)))))	GGAGAGGUAGAUAGAUAGGGGG&UCUUCUAUUUUUCUAU-UUUCC	2	0.998717173747751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7307_c0_g1_229_TPlot.pdf
TRINITY_DN7307_c0_g1:231	si_a784	TRINITY_DN7307_c0_g1	220	240	231	-24.70	-16.50	0.668016194331984	9.5	3-12,238-229;14-21,227-220	1-2,240-239[UP5];13-13,228-228[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	GAGGUAGAUAGAUAGGGGGAC&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999957612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7307_c0_g1_231_TPlot.pdf
TRINITY_DN730_c0_g1:1766	si_s185	TRINITY_DN730_c0_g1	1754	1776	1766	-33.30	-22.50	0.675675675675676	4.5	1-8,1776-1769;9-18,1767-1758;19-21,1756-1754	x-x,1768-1768[BULt];x-x,1757-1757[BULt]	(((.((((((((((.((((((((&))))))))-))))))))))-)))	CUAUAAAUAAUUGUAUACUCGGG&CCCGAGUA-ACGAUUAUUU-UGG	4	0.773780576466724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s185_TRINITY_DN730_c0_g1_1766_TPlot.pdf
TRINITY_DN730_c0_g1:1767	si_s184	TRINITY_DN730_c0_g1	1756	1777	1767	-33.40	-23.90	0.715568862275449	5.5	1-9,1777-1769;10-19,1767-1758	x-x,1768-1768[BULt];20-21,1757-1756[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUAAAUAAUUGUAUACUCGGGU&GCCCGAGUA-ACGAUUAUUUUG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN730_c0_g1_1767_TPlot.pdf
TRINITY_DN730_c0_g1:1769	si_s183	TRINITY_DN730_c0_g1	1757	1778	1769	-32.40	-24.90	0.768518518518518	4.5	1-10,1778-1769;11-20,1767-1758	x-x,1768-1768[BULt];21-21,1757-1757[UP3]	.((((((((((.((((((((((&))))))))))-)))))))))).	UAAAUAAUUGUAUACUCGGGUA&UGCCCGAGUA-ACGAUUAUUUU	2	0.105969456582111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN730_c0_g1_1769_TPlot.pdf
TRINITY_DN730_c0_g1:1771	si_s181	TRINITY_DN730_c0_g1	1759	1780	1771	-34.60	-24.20	0.699421965317919	6.5	3-12,1778-1769;13-21,1767-1759	1-2,1780-1779[UP5];x-x,1768-1768[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	AAUAAUUGUAUACUCGGGUAGA&GAUGCCCGAGUA-ACGAUUAUU	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN730_c0_g1_1771_TPlot.pdf
TRINITY_DN730_c0_g1:829	si_a759	TRINITY_DN730_c0_g1	818	847	829	-32.60	-23.00	0.705521472392638	24	1-5,847-843;6-20,833-819	x-x,842-834[BULt];21-21,818-818[UP3]	.(((((((((((((((.........(((((&)))))---------))))))))))))))).	CCAAUCAGGGGCCCGAUCUUACCAAAGGGG&CUCCU---------UUGGGUUUUUGAUUGA	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN730_c0_g1_829_TPlot.pdf
TRINITY_DN7313_c0_g1:447	si_s444	TRINITY_DN7313_c0_g1	436	458	447	-22.80	-16.00	0.701754385964912	7.5	1-5,458-454;6-16,451-441;18-21,439-436	x-x,453-452[BULt];17-17,440-440[SIL]	((((.(((((((((((..(((((&)))))--))))))))))).))))	GUUGAUGUUGUAUAUACCAUGUG&CAUAU--UAUAUAUAACAACAAU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN7313_c0_g1_447_TPlot.pdf
TRINITY_DN7313_c0_g1:451	si_s440	TRINITY_DN7313_c0_g1	440	460	451	-21.60	-14.30	0.662037037037037	8.5	2-7,459-454;10-20,451-441	1-1,460-460[UP5];8-9,453-452[SIL];21-21,440-440[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	AUGUUGUAUAUACCAUGUGGG&AUUACAUAUUAUAUAUAACAA	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN7313_c0_g1_451_TPlot.pdf
TRINITY_DN7313_c0_g1:452	si_s439	TRINITY_DN7313_c0_g1	441	461	452	-21.50	-14.10	0.655813953488372	9.5	3-8,459-454;11-21,451-441	1-2,461-460[UP5];9-10,453-452[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	UGUUGUAUAUACCAUGUGGGC&AAUUACAUAUUAUAUAUAACA	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN7313_c0_g1_452_TPlot.pdf
TRINITY_DN7313_c0_g1:619	si_s76	TRINITY_DN7313_c0_g1	606	628	619	-23.60	-15.70	0.665254237288135	7.5	2-14,627-615;15-16,613-612;17-20,610-607	1-1,628-628[UP5];x-x,614-614[BULt];x-x,611-611[BULt];21-21,606-606[UP3]	.((((.((.(((((((((((((.&.)))))))))))))-))-)))).	UAGAGCAGAGAGAGAAAAGAGAG&AUUUUUUUUCUUUC-CU-UUCUU	0	0.950673146214202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7313_c0_g1_619_TPlot.pdf
TRINITY_DN7313_c0_g1:620	si_s75	TRINITY_DN7313_c0_g1	607	629	620	-24.00	-15.70	0.654166666666667	8	3-15,627-615;16-17,613-612;18-21,610-607	1-2,629-628[UP5];x-x,614-614[BULt];x-x,611-611[BULt]	((((.((.(((((((((((((..&..)))))))))))))-))-))))	AGAGCAGAGAGAGAAAAGAGAGA&UAUUUUUUUUCUUUC-CU-UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7313_c0_g1_620_TPlot.pdf
TRINITY_DN7313_c0_g1:625	si_s72	TRINITY_DN7313_c0_g1	611	634	625	-24.10	-15.70	0.651452282157676	10.5	2-11,633-624;12-18,621-615;19-20,613-612	1-1,634-634[UP5];x-x,623-622[BULt];x-x,614-614[BULt];21-21,611-611[UP3]	.((.(((((((..((((((((((.&.))))))))))--)))))))-)).	CAGAGAGAGAAAAGAGAGAUAGAC&UUCUAUUUUUU--UUCUUUC-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7313_c0_g1_625_TPlot.pdf
TRINITY_DN7313_c0_g1:650	si_s77	TRINITY_DN7313_c0_g1	638	659	650	-25.50	-19.50	0.764705882352941	5.5	2-11,658-649;12-20,647-639	1-1,659-659[UP5];x-x,648-648[BULt];21-21,638-638[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AAAGAGAGGAUAAGAAAAAGAU&UUUUUUUUCUU-UCCUUUCUUC	2	0.99999856491559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7313_c0_g1_650_TPlot.pdf
TRINITY_DN7313_c0_g1:651	si_s76	TRINITY_DN7313_c0_g1	639	660	651	-23.60	-19.50	0.826271186440678	6.5	3-12,658-649;13-21,647-639	1-2,660-659[UP5];x-x,648-648[BULt]	(((((((((.((((((((((..&..))))))))))-)))))))))	AAGAGAGGAUAAGAAAAAGAUA&AUUUUUUUUCUU-UCCUUUCUU	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7313_c0_g1_651_TPlot.pdf
TRINITY_DN7313_c0_g1:652	si_s75	TRINITY_DN7313_c0_g1	640	661	652	-24.00	-18.60	0.775	7.5	4-13,658-649;14-21,647-640	1-3,661-659[UP5];x-x,648-648[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AGAGAGGAUAAGAAAAAGAUAC&UAUUUUUUUUCUU-UCCUUUCU	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7313_c0_g1_652_TPlot.pdf
TRINITY_DN7313_c0_g1:653	si_s74	TRINITY_DN7313_c0_g1	641	662	653	-25.00	-17.30	0.692	9.5	5-14,658-649;15-21,647-641	1-4,662-659[UP5];x-x,648-648[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GAGAGGAUAAGAAAAAGAUACU&CUAUUUUUUUUCUU-UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7313_c0_g1_653_TPlot.pdf
TRINITY_DN7313_c0_g1:695	si_a498	TRINITY_DN7313_c0_g1	684	707	695	-33.50	-22.10	0.659701492537313	12.5	3-9,705-699;10-20,695-685	1-2,707-706[UP5];x-x,698-696[BULt];21-21,684-684[UP3]	.(((((((((((...(((((((..&..)))))))---))))))))))).	GGAGGAAGAUGAAAAGAAACGAAA&UGUCGUUUU---UCGUCUUCCUUG	3	0.999999999999883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN7313_c0_g1_695_TPlot.pdf
TRINITY_DN7314_c0_g1:270	si_a455	TRINITY_DN7314_c0_g1	259	279	270	-21.10	-14.60	0.691943127962085	9	2-15,278-265	1-1,279-279[UP5];16-21,264-259[UP3]	......((((((((((((((.&.))))))))))))))......	CUAGUUUAUAUAACGACAGUC&AAUUGUUGUUAUAUAUAAUAU	3	0.999951779956384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN7314_c0_g1_270_TPlot.pdf
TRINITY_DN7314_c0_g1:271	si_a454	TRINITY_DN7314_c0_g1	260	280	271	-21.30	-14.60	0.685446009389671	10	3-16,278-265	1-2,280-279[UP5];17-21,264-260[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAGUUUAUAUAACGACAGUCU&UAAUUGUUGUUAUAUAUAAUA	3	0.999882492205924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN7314_c0_g1_271_TPlot.pdf
TRINITY_DN7314_c0_g1:272	si_a453	TRINITY_DN7314_c0_g1	261	281	272	-21.10	-14.60	0.691943127962085	11	4-17,278-265	1-3,281-279[UP5];18-21,264-261[UP3]	....((((((((((((((...&...))))))))))))))....	AGUUUAUAUAACGACAGUCUU&AUAAUUGUUGUUAUAUAUAAU	3	0.999905950410383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN7314_c0_g1_272_TPlot.pdf
TRINITY_DN7314_c0_g1:273	si_a452	TRINITY_DN7314_c0_g1	262	282	273	-23.00	-16.40	0.71304347826087	9	1-2,282-281;5-18,278-265	3-4,280-279[SIL];19-21,264-262[UP3]	...((((((((((((((..((&))..))))))))))))))...	GUUUAUAUAACGACAGUCUUC&GAUAAUUGUUGUUAUAUAUAA	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN7314_c0_g1_273_TPlot.pdf
TRINITY_DN7314_c0_g1:274	si_a451	TRINITY_DN7314_c0_g1	263	283	274	-23.60	-16.60	0.703389830508475	9	2-3,282-281;6-19,278-265	1-1,283-283[UP5];4-5,280-279[SIL];20-21,264-263[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	UUUAUAUAACGACAGUCUUCC&AGAUAAUUGUUGUUAUAUAUA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN7314_c0_g1_274_TPlot.pdf
TRINITY_DN7314_c0_g1:276	si_a449	TRINITY_DN7314_c0_g1	265	284	276	-25.70	-17.40	0.67704280155642	7.5	1-2,284-283;4-5,282-281;8-21,278-265	3-3,x-x[BULq];6-7,280-279[SIL]	((((((((((((((..((-((&)).))..))))))))))))))	UAUAUAACGACAGUCUUC-CA&UGAGAUAAUUGUUGUUAUAUA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN7314_c0_g1_276_TPlot.pdf
TRINITY_DN7315_c0_g2:1452	si_s81	TRINITY_DN7315_c0_g2	1439	1461	1452	-28.90	-23.60	0.816608996539792	7	1-11,1461-1451;12-20,1448-1440	x-x,1450-1449[BULt];21-21,1439-1439[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	UGGAGAAGGAAAAGGAAAGAGAA&UUUUCUUUCCU--UUCUUCUUCU	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7315_c0_g2_1452_TPlot.pdf
TRINITY_DN7315_c0_g2:1458	si_s75	TRINITY_DN7315_c0_g2	1446	1467	1458	-24.00	-16.50	0.6875	11.5	6-19,1462-1449;20-21,1447-1446	1-5,1467-1463[UP5];x-x,1448-1448[BULt]	((.((((((((((((((.....&.....))))))))))))))-))	GGAAAAGGAAAGAGAAAUUUGU&UAUUUUUUUUCUUUCCUUU-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7315_c0_g2_1458_TPlot.pdf
TRINITY_DN7315_c0_g2:1461	si_s72	TRINITY_DN7315_c0_g2	1450	1476	1461	-24.10	-15.72	0.652282157676349	19	1-5,1476-1472;9-21,1462-1450	6-8,1471-1463[AILt]	(((((((((((((.........(((((&)))))------...)))))))))))))	AAGGAAAGAGAAAUUUGUCGUUUAGAA&UUCUA------UUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7315_c0_g2_1461_TPlot.pdf
TRINITY_DN7315_c0_g3:2847	si_s818	TRINITY_DN7315_c0_g3	2836	2856	2847	-23.70	-18.10	0.763713080168776	7	1-7,2856-2850;9-19,2848-2838	8-8,2849-2849[SIL];20-21,2837-2836[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	CAUUUCAUUAUUGUGGAAGGG&CCUUUUCUUAAUAAUGAAAAA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN7315_c0_g3_2847_TPlot.pdf
TRINITY_DN7315_c0_g3:2851	si_s814	TRINITY_DN7315_c0_g3	2840	2861	2851	-26.60	-18.30	0.68796992481203	8.5	1-2,2861-2860;4-11,2857-2850;13-21,2848-2840	3-3,2859-2858[AILt];12-12,2849-2849[SIL]	(((((((((.((((((((..((&))-.)))))))).)))))))))	UCAUUAUUGUGGAAGGGUUCAC&GU-UACCUUUUCUUAAUAAUGA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN7315_c0_g3_2851_TPlot.pdf
TRINITY_DN7317_c1_g1:391	si_a784	TRINITY_DN7317_c1_g1	380	409	391	-24.70	-16.60	0.672064777327935	21.5	1-7,409-403;8-20,393-381	x-x,402-394[BULt];21-21,380-380[UP3]	.(((((((((((((.........(((((((&)))))))---------))))))))))))).	CGAAUAGAAAGAUACAAAACAGUGAAGGGU&ACUCUUC---------UAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7317_c1_g1_391_TPlot.pdf
TRINITY_DN731_c0_g1:1090	si_s628	TRINITY_DN731_c0_g1	1078	1099	1090	-35.40	-23.20	0.655367231638418	8	1-6,1099-1094;8-16,1092-1084;17-18,1082-1081	7-7,1093-1093[SIL];x-x,1083-1083[BULt];19-21,1080-1078[UP3]	...((.(((((((((.((((((&)))))).)))))))))-))...	CGUCGACUUGCGAGAUGAUCGC&GCGAUCUUUUCGUAGG-CGUUU	4	0.999999073922236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN731_c0_g1_1090_TPlot.pdf
TRINITY_DN731_c0_g1:816	si_a749	TRINITY_DN731_c0_g1	804	824	816	-42.10	-28.30	0.672209026128266	5.5	1-4,824-821;6-14,820-812;15-17,810-808;19-21,806-804	5-5,x-x[BULq];x-x,811-811[BULt];18-18,807-807[SIL]	(((.(((.(((((((((-((((&)))).)))))))))-))).)))	ACCGAGAUGGAGGUUCA-GGUC&GGCCAUGAACCUCC-UUUGGGU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a749_TRINITY_DN731_c0_g1_816_TPlot.pdf
TRINITY_DN7321_c0_g1:647	si_a756	TRINITY_DN7321_c0_g1	632	656	647	-33.10	-24.00	0.725075528700906	10.5	4-14,653-643;15-21,638-632	1-3,656-654[UP5];x-x,642-639[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	GUCGAAAGCAGGCCCAAAGGAGAAA&AACCUCCUUUGGGU----UUUUGAU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN7321_c0_g1_647_TPlot.pdf
TRINITY_DN7321_c0_g1:796	si_a408	TRINITY_DN7321_c0_g1	785	808	796	-20.10	-14.00	0.696517412935323	11.5	1-9,808-800;10-18,796-788	x-x,799-797[BULt];19-21,787-785[UP3]	...(((((((((...(((((((((&)))))))))---)))))))))...	AACUUAGAUGUAUUGGACAAAACA&UGUUUUGUU---UAUAUUUAAAUA	2	0.99984729171278	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN7321_c0_g1_796_TPlot.pdf
TRINITY_DN7325_c0_g1:531	si_a781	TRINITY_DN7325_c0_g1	520	541	531	-27.40	-18.70	0.682481751824818	6	1-7,541-535;8-11,533-530;13-19,528-522	x-x,534-534[BULt];12-12,529-529[SIL];20-21,521-520[UP3]	..(((((((.((((.(((((((&)))))))-)))).)))))))..	AAAGAAAAACAGAAGGAGUUGA&UCAACUC-UUCUAUUUUUCUAU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN7325_c0_g1_531_TPlot.pdf
TRINITY_DN7325_c0_g1:532	si_a780	TRINITY_DN7325_c0_g1	521	542	532	-27.30	-19.60	0.717948717948718	4	1-8,542-535;9-12,533-530;14-20,528-522	x-x,534-534[BULt];13-13,529-529[SIL];21-21,521-521[UP3]	.(((((((.((((.((((((((&))))))))-)))).))))))).	AAGAAAAACAGAAGGAGUUGAA&UUCAACUC-UUCUAUUUUUCUA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN7325_c0_g1_532_TPlot.pdf
TRINITY_DN7326_c0_g1:2006	si_s549	TRINITY_DN7326_c0_g1	1995	2015	2006	-20.50	-13.90	0.678048780487805	4.5	1-11,2015-2005;13-15,2003-2001;17-21,1999-1995	12-12,2004-2004[SIL];16-16,2000-2000[SIL]	(((((.(((.(((((((((((&))))))))))).))).)))))	AGGUAGUGACUCUAUUUUGAU&AUCAAAAUAGAAUUAAUAUUU	4	0.970079189431542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN7326_c0_g1_2006_TPlot.pdf
TRINITY_DN7326_c0_g1:2359	si_a594	TRINITY_DN7326_c0_g1	2348	2369	2359	-32.30	-24.90	0.770897832817337	6.5	1-5,2369-2365;6-18,2363-2351	x-x,2364-2364[BULt];19-21,2350-2348[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	AGAGCGAGAAUUUUGUACCUUC&GAAGG-ACAGAAUUUUCGCAAU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a594_TRINITY_DN7326_c0_g1_2359_TPlot.pdf
TRINITY_DN7326_c0_g1:457	si_s73	TRINITY_DN7326_c0_g1	442	466	457	-24.00	-16.30	0.679166666666667	8.5	1-5,466-462;7-14,460-453;15-21,448-442	6-6,461-461[SIL];x-x,452-449[BULt]	(((((((....((((((((.(((((&))))).))))))))----)))))))	AAAGGAGAGUUAGAAAAAAUGUGGA&UCUAUUUUUUUUCU----UUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7326_c0_g1_457_TPlot.pdf
TRINITY_DN7326_c0_g1:812	si_a789	TRINITY_DN7326_c0_g1	801	821	812	-24.80	-19.60	0.790322580645161	6	1-12,821-810;15-18,807-804	13-14,809-808[SIL];19-21,803-801[UP3]	...((((..((((((((((((&))))))))))))..))))...	GUGGGAAUUUGGAAAAAUAGA&UCUAUUUUUCUAUUUUCCAAU	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN7326_c0_g1_812_TPlot.pdf
TRINITY_DN7326_c0_g1:814	si_a787	TRINITY_DN7326_c0_g1	803	823	814	-26.30	-20.40	0.775665399239544	4.5	2-14,822-810;17-20,807-804	1-1,823-823[UP5];15-16,809-808[SIL];21-21,803-803[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	GGGAAUUUGGAAAAAUAGAAC&CUUCUAUUUUUCUAUUUUCCA	2	0.827076674066767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7326_c0_g1_814_TPlot.pdf
TRINITY_DN7326_c0_g1:815	si_a786	TRINITY_DN7326_c0_g1	804	824	815	-26.60	-20.00	0.75187969924812	5.5	3-15,822-810;18-21,807-804	1-2,824-823[UP5];16-17,809-808[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	GGAAUUUGGAAAAAUAGAACC&UCUUCUAUUUUUCUAUUUUCC	4	0.992179090070964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7326_c0_g1_815_TPlot.pdf
TRINITY_DN7328_c0_g1:183	si_a787	TRINITY_DN7328_c0_g1	169	192	183	-26.30	-17.70	0.673003802281369	7	1-8,192-185;10-18,183-175;19-21,171-169	9-9,184-184[SIL];x-x,174-172[BULt]	(((...(((((((((.((((((((&)))))))).)))))))))---)))	UGGUGCGGAAUAGAACAGUAGAAG&CUUCUAUUUUUCUAUUUU---CCA	3	0.999999999998534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7328_c0_g1_183_TPlot.pdf
TRINITY_DN7328_c0_g1:194	si_a785	TRINITY_DN7328_c0_g1	181	203	194	-25.90	-17.50	0.675675675675676	6.5	2-10,202-194;11-18,192-185;19-21,183-181	1-1,203-203[UP5];x-x,193-193[BULt];x-x,184-184[BULt]	(((.((((((((.(((((((((.&.)))))))))-))))))))-)))	GAACAGUAGAAGCAAUGGAAGAA&CUCUUCUAUU-UUUCUAUU-UUC	3	0.999999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7328_c0_g1_194_TPlot.pdf
TRINITY_DN7328_c0_g1:195	si_a784	TRINITY_DN7328_c0_g1	183	204	195	-24.70	-16.20	0.65587044534413	9.5	3-11,202-194;12-19,192-185	1-2,204-203[UP5];x-x,193-193[BULt];20-21,184-183[UP3]	..((((((((.(((((((((..&..)))))))))-))))))))..	ACAGUAGAAGCAAUGGAAGAAG&ACUCUUCUAUU-UUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7328_c0_g1_195_TPlot.pdf
TRINITY_DN7328_c0_g1:196	si_a783	TRINITY_DN7328_c0_g1	184	205	196	-24.70	-16.20	0.65587044534413	10	4-12,202-194;13-20,192-185	1-3,205-203[UP5];x-x,193-193[BULt];21-21,184-184[UP3]	.((((((((.(((((((((...&...)))))))))-)))))))).	CAGUAGAAGCAAUGGAAGAAGA&AACUCUUCUAUU-UUUCUAUUU	2	0.999999999999758	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7328_c0_g1_196_TPlot.pdf
TRINITY_DN7329_c0_g1:1128	si_a20	TRINITY_DN7329_c0_g1	1117	1137	1128	-26.70	-18.50	0.692883895131086	9.5	1-11,1137-1127;13-18,1125-1120	12-12,1126-1126[SIL];19-21,1119-1117[UP3]	...((((((.(((((((((((&))))))))))).))))))...	UUUGGCUGACAAUGAGUGGGC&GCCUAUUUAUUUUUAGUUCUA	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7329_c0_g1_1128_TPlot.pdf
TRINITY_DN732_c0_g1:1827	si_a407	TRINITY_DN732_c0_g1	1816	1836	1827	-19.80	-13.30	0.671717171717172	10	1-4,1836-1833;7-17,1830-1820	5-6,1832-1831[SIL];18-21,1819-1816[UP3]	....(((((((((((..((((&))))..)))))))))))....	UUUCAGAUAUAGACAUUACAG&UUGUUUUGUUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN732_c0_g1_1827_TPlot.pdf
TRINITY_DN732_c0_g1:1828	si_a406	TRINITY_DN732_c0_g1	1817	1837	1828	-19.80	-13.30	0.671717171717172	10.5	2-5,1836-1833;8-18,1830-1820	1-1,1837-1837[UP5];6-7,1832-1831[SIL];19-21,1819-1817[UP3]	...(((((((((((..((((.&.))))..)))))))))))...	UUCAGAUAUAGACAUUACAGG&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN732_c0_g1_1828_TPlot.pdf
TRINITY_DN732_c0_g1:1829	si_a405	TRINITY_DN732_c0_g1	1818	1838	1829	-19.80	-13.30	0.671717171717172	11.5	3-6,1836-1833;9-19,1830-1820	1-2,1838-1837[UP5];7-8,1832-1831[SIL];20-21,1819-1818[UP3]	..(((((((((((..((((..&..))))..)))))))))))..	UCAGAUAUAGACAUUACAGGC&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN732_c0_g1_1829_TPlot.pdf
TRINITY_DN732_c0_g1:212	si_s18	TRINITY_DN732_c0_g1	202	223	212	-27.50	-18.10	0.658181818181818	8	1-6,223-218;7-14,215-208;16-21,207-202	x-x,217-216[BULt];15-15,x-x[BULq]	((((((-((((((((..((((((&))))))--)))))))).))))))	AGUUGC-AUCGGUAUUAAGUAGU&AUUACU--AUAUUGAUUGCAACU	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN732_c0_g1_212_TPlot.pdf
TRINITY_DN732_c0_g1:820	si_s780	TRINITY_DN732_c0_g1	811	829	820	-30.50	-21.08	0.691147540983607	7	1-12,829-818;17-21,815-811	13-16,817-816[AILq]	(((((..--((((((((((((&))))))))))))....)))))	GAGCUGA--UUGUAGCGAUGG&CUAUUGCUAUAAAACAAGCUC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s780_TRINITY_DN732_c0_g1_820_TPlot.pdf
TRINITY_DN732_c0_g1:836	si_a789	TRINITY_DN732_c0_g1	825	845	836	-24.80	-17.30	0.69758064516129	10.5	1-11,845-835;14-19,832-827	12-13,834-833[SIL];20-21,826-825[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	GAUGGAGAUAAGGGAGGUGGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999998256697046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN732_c0_g1_836_TPlot.pdf
TRINITY_DN732_c0_g1:837	si_a788	TRINITY_DN732_c0_g1	826	846	837	-24.80	-18.20	0.733870967741935	8.5	1-12,846-835;15-20,832-827	13-14,834-833[SIL];21-21,826-826[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	AUGGAGAUAAGGGAGGUGGAA&UUCUAUUUUUCUAUUUUCCAA	2	0.99060244577417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN732_c0_g1_837_TPlot.pdf
TRINITY_DN732_c0_g1:838	si_a787	TRINITY_DN732_c0_g1	827	847	838	-26.30	-18.20	0.692015209125475	8.5	2-13,846-835;16-21,832-827	1-1,847-847[UP5];14-15,834-833[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UGGAGAUAAGGGAGGUGGAAA&CUUCUAUUUUUCUAUUUUCCA	2	0.999988812039697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN732_c0_g1_838_TPlot.pdf
TRINITY_DN732_c0_g1:839	si_s78	TRINITY_DN732_c0_g1	827	848	839	-26.20	-17.40	0.66412213740458	8.5	1-6,848-843;8-15,841-834;16-20,832-828	7-7,842-842[SIL];x-x,833-833[BULt];21-21,827-827[UP3]	.(((((.((((((((.((((((&)))))).))))))))-))))).	UGGAGAUAAGGGAGGUGGAAAA&UUUUUUUCUUUCCUU-UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN732_c0_g1_839_TPlot.pdf
TRINITY_DN732_c0_g1:840	si_a549	TRINITY_DN732_c0_g1	828	849	840	-29.50	-19.80	0.671186440677966	11.5	5-13,845-837;14-21,835-828	1-4,849-846[UP5];x-x,836-836[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	GGAGAUAAGGGAGGUGGAAAAA&UCAAUCUAUUUCU-UUAUCUCC	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN732_c0_g1_840_TPlot.pdf
TRINITY_DN732_c0_g1:841	si_s76	TRINITY_DN732_c0_g1	829	850	841	-23.60	-15.80	0.669491525423729	8	2-8,849-843;10-17,841-834;18-21,832-829	1-1,850-850[UP5];9-9,842-842[SIL];x-x,833-833[BULt]	((((.((((((((.(((((((.&.))))))).))))))))-))))	GAGAUAAGGGAGGUGGAAAAAA&AUUUUUUUUCUUUCCUU-UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN732_c0_g1_841_TPlot.pdf
TRINITY_DN732_c0_g2:238	si_s780	TRINITY_DN732_c0_g2	229	247	238	-30.50	-21.08	0.691147540983607	7	1-12,247-236;17-21,233-229	13-16,235-234[AILq]	(((((..--((((((((((((&))))))))))))....)))))	GAGCUGA--UUGUAGCGAUGG&CUAUUGCUAUAAAACAAGCUC	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s780_TRINITY_DN732_c0_g2_238_TPlot.pdf
TRINITY_DN732_c0_g2:254	si_a789	TRINITY_DN732_c0_g2	243	263	254	-24.80	-17.30	0.69758064516129	10.5	1-11,263-253;14-19,250-245	12-13,252-251[SIL];20-21,244-243[UP3]	..((((((..(((((((((((&)))))))))))..))))))..	GAUGGAGAUAAGGGAGGUGGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999998813333396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN732_c0_g2_254_TPlot.pdf
TRINITY_DN732_c0_g2:255	si_a788	TRINITY_DN732_c0_g2	244	264	255	-24.80	-18.20	0.733870967741935	8.5	1-12,264-253;15-20,250-245	13-14,252-251[SIL];21-21,244-244[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	AUGGAGAUAAGGGAGGUGGAA&UUCUAUUUUUCUAUUUUCCAA	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN732_c0_g2_255_TPlot.pdf
TRINITY_DN732_c0_g2:256	si_a787	TRINITY_DN732_c0_g2	245	265	256	-26.30	-18.20	0.692015209125475	8.5	2-13,264-253;16-21,250-245	1-1,265-265[UP5];14-15,252-251[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	UGGAGAUAAGGGAGGUGGAAA&CUUCUAUUUUUCUAUUUUCCA	2	0.999992852398334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN732_c0_g2_256_TPlot.pdf
TRINITY_DN732_c0_g2:257	si_s78	TRINITY_DN732_c0_g2	245	266	257	-26.20	-17.40	0.66412213740458	8.5	1-6,266-261;8-15,259-252;16-20,250-246	7-7,260-260[SIL];x-x,251-251[BULt];21-21,245-245[UP3]	.(((((.((((((((.((((((&)))))).))))))))-))))).	UGGAGAUAAGGGAGGUGGAAAA&UUUUUUUCUUUCCUU-UCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN732_c0_g2_257_TPlot.pdf
TRINITY_DN732_c0_g2:258	si_a549	TRINITY_DN732_c0_g2	246	267	258	-29.50	-19.80	0.671186440677966	11.5	5-13,263-255;14-21,253-246	1-4,267-264[UP5];x-x,254-254[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	GGAGAUAAGGGAGGUGGAAAAA&UCAAUCUAUUUCU-UUAUCUCC	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN732_c0_g2_258_TPlot.pdf
TRINITY_DN732_c0_g2:259	si_s76	TRINITY_DN732_c0_g2	247	268	259	-23.60	-15.80	0.669491525423729	8	2-8,267-261;10-17,259-252;18-21,250-247	1-1,268-268[UP5];9-9,260-260[SIL];x-x,251-251[BULt]	((((.((((((((.(((((((.&.))))))).))))))))-))))	GAGAUAAGGGAGGUGGAAAAAA&AUUUUUUUUCUUUCCUU-UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN732_c0_g2_259_TPlot.pdf
TRINITY_DN7330_c0_g1:1621	si_a850	TRINITY_DN7330_c0_g1	1610	1630	1621	-29.00	-19.70	0.679310344827586	10	5-19,1626-1612	1-4,1630-1627[UP5];20-21,1611-1610[UP3]	..(((((((((((((((....&....)))))))))))))))..	AUUUGGAUUUCAAGUUGUUCU&UUGCUAACUUGAAAUCCAAUU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a850_TRINITY_DN7330_c0_g1_1621_TPlot.pdf
TRINITY_DN7330_c0_g1:2249	si_s76	TRINITY_DN7330_c0_g1	2235	2258	2249	-23.60	-17.50	0.741525423728813	12	2-12,2257-2247;13-19,2243-2237	1-1,2258-2258[UP5];x-x,2246-2244[BULt];20-21,2236-2235[UP3]	..(((((((...(((((((((((.&.)))))))))))---)))))))..	UUGAAAGGACUGGAGAAGAAAGAA&AUUUUUUUUCUU---UCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7330_c0_g1_2249_TPlot.pdf
TRINITY_DN7330_c0_g1:2250	si_s75	TRINITY_DN7330_c0_g1	2236	2259	2250	-24.00	-17.50	0.729166666666667	9.5	3-13,2257-2247;14-20,2243-2237	1-2,2259-2258[UP5];x-x,2246-2244[BULt];21-21,2236-2236[UP3]	.(((((((...(((((((((((..&..)))))))))))---))))))).	UGAAAGGACUGGAGAAGAAAGAAA&UAUUUUUUUUCUU---UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7330_c0_g1_2250_TPlot.pdf
TRINITY_DN7330_c0_g1:2251	si_s74	TRINITY_DN7330_c0_g1	2237	2260	2251	-25.00	-17.10	0.684	10.5	4-14,2257-2247;15-21,2243-2237	1-3,2260-2258[UP5];x-x,2246-2244[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	GAAAGGACUGGAGAAGAAAGAAAU&CUAUUUUUUUUCUU---UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7330_c0_g1_2251_TPlot.pdf
TRINITY_DN7330_c0_g1:2883	si_s82	TRINITY_DN7330_c0_g1	2872	2896	2883	-28.90	-19.26	0.66643598615917	13	1-8,2896-2889;11-21,2882-2872	9-10,2888-2883[AILt]	(((((((((((......((((((((&))))))))----..)))))))))))	AAGAAGAAGAAUACAACGAAAGAGA&UUUCUUUC----CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7330_c0_g1_2883_TPlot.pdf
TRINITY_DN7330_c0_g1:3798	si_a123	TRINITY_DN7330_c0_g1	3787	3810	3798	-26.60	-17.48	0.657142857142857	16	1-6,3810-3805;11-21,3797-3787	7-10,3804-3798[AILt]	(((((((((((.......((((((&))))))---....)))))))))))	UUACUAUUGCUUGCUUUCAGCAGG&CUUGUU---UUAUAGCAAUAGUAA	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN7330_c0_g1_3798_TPlot.pdf
TRINITY_DN7330_c0_g1:4180	si_a424	TRINITY_DN7330_c0_g1	4168	4189	4180	-28.40	-18.60	0.654929577464789	12	6-13,4184-4177;14-21,4175-4168	1-5,4189-4185[UP5];x-x,4176-4176[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	CAACGGAUGCUUGUAUUGCAUA&AAAUAAAUAUAGG-AUCCGUUG	4	0.971289310040491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN7330_c0_g1_4180_TPlot.pdf
TRINITY_DN7330_c0_g1:5493	si_a788	TRINITY_DN7330_c0_g1	5481	5502	5493	-24.80	-16.50	0.665322580645161	8	1-10,5502-5493;11-18,5491-5484	x-x,5492-5492[BULt];19-21,5483-5481[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	GAAGAGAGUAGAAGAAAUAGGA&UUCUAUUUUU-CUAUUUUCCAA	2	0.999999989353871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7330_c0_g1_5493_TPlot.pdf
TRINITY_DN7330_c0_g1:5496	si_s69	TRINITY_DN7330_c0_g1	5484	5505	5496	-23.40	-16.20	0.692307692307692	9	4-16,5502-5490;17-21,5488-5484	1-3,5505-5503[UP5];x-x,5489-5489[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAGAGUAGAAGAAAUAGGAAAU&AACUUCUAUUUUUUUU-CUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7330_c0_g1_5496_TPlot.pdf
TRINITY_DN7330_c0_g1:794	si_a790	TRINITY_DN7330_c0_g1	780	803	794	-25.80	-16.90	0.655038759689922	11.5	5-14,799-790;15-21,786-780	1-4,803-800[UP5];x-x,789-787[BULt]	(((((((...((((((((((....&....))))))))))---)))))))	GAUUGGAAUAGAAUAGAAGAUAUA&CUAUUUUUCUAUUU---UCCAAUC	4	0.999999987865376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN7330_c0_g1_794_TPlot.pdf
TRINITY_DN7339_c1_g1:584	si_s713	TRINITY_DN7339_c1_g1	573	594	584	-32.00	-21.50	0.671875	8	2-7,593-588;8-17,586-577	1-1,594-594[UP5];x-x,587-587[BULt];18-21,576-573[UP3]	....((((((((((.((((((.&.))))))-))))))))))....	ACACGUUUUUCCCUGGUUCACC&AGUGAAC-AGGGAAAGAUAUUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s713_TRINITY_DN7339_c1_g1_584_TPlot.pdf
TRINITY_DN7339_c1_g1:588	si_s710	TRINITY_DN7339_c1_g1	576	597	588	-32.00	-21.60	0.675	6	1-3,597-595;5-10,593-588;11-20,586-577	4-4,594-594[SIL];x-x,587-587[BULt];21-21,576-576[UP3]	.((((((((((.((((((.(((&))).))))))-)))))))))).	CGUUUUUCCCUGGUUCACCAAU&AUUAGUGAAC-AGGGAAAGAUA	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s710_TRINITY_DN7339_c1_g1_588_TPlot.pdf
TRINITY_DN7339_c1_g1:590	si_s708	TRINITY_DN7339_c1_g1	578	599	590	-31.90	-21.30	0.667711598746082	5.5	2-5,598-595;7-12,593-588;13-21,586-578	1-1,599-599[UP5];6-6,594-594[SIL];x-x,587-587[BULt]	(((((((((.((((((.((((.&.)))).))))))-)))))))))	UUUUUCCCUGGUUCACCAAUAU&UUAUUAGUGAAC-AGGGAAAGA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s708_TRINITY_DN7339_c1_g1_590_TPlot.pdf
TRINITY_DN7339_c1_g1:592	si_s706	TRINITY_DN7339_c1_g1	580	601	592	-29.40	-19.50	0.663265306122449	8	4-7,598-595;9-14,593-588;15-21,586-580	1-3,601-599[UP5];8-8,594-594[SIL];x-x,587-587[BULt]	(((((((.((((((.((((...&...)))).))))))-)))))))	UUUCCCUGGUUCACCAAUAUUU&AUUUAUUAGUGAAC-AGGGAAA	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s706_TRINITY_DN7339_c1_g1_592_TPlot.pdf
TRINITY_DN7341_c0_g1:1068	si_a56	TRINITY_DN7341_c0_g1	1053	1077	1068	-38.90	-26.08	0.670437017994859	13.5	1-10,1077-1068;12-17,1062-1057;19-20,1055-1054	11-11,1067-1063[AILt];18-18,1056-1056[SIL];21-21,1053-1053[UP3]	.((.((((((.....((((((((((&))))))))))----.)))))).)).	AGACGGAAGCCUCCAAGUCGGCUCC&GGAGUCGACU----CGCUUCUUUCA	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN7341_c0_g1_1068_TPlot.pdf
TRINITY_DN7345_c0_g1:2024	si_a429	TRINITY_DN7345_c0_g1	2013	2033	2024	-32.00	-21.50	0.671875	9.5	3-16,2031-2018	1-2,2033-2032[UP5];17-21,2017-2013[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAAAUUAACGGAUCCUGUAGG&AAUAUAGGAUCCGUUGGAUAU	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN7345_c0_g1_2024_TPlot.pdf
TRINITY_DN7345_c0_g1:3508	si_s88	TRINITY_DN7345_c0_g1	3496	3517	3508	-34.80	-24.90	0.71551724137931	6.5	1-14,3517-3504;15-20,3502-3497	x-x,3503-3503[BULt];21-21,3496-3496[UP3]	.((((((.((((((((((((((&))))))))))))))-)))))).	AGAGUGGUGGAAGAAGGAGGGG&UCCUUUCUUCUUCU-UCGCUUC	4	0.999995906285367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7345_c0_g1_3508_TPlot.pdf
TRINITY_DN7345_c0_g1:3548	si_a128	TRINITY_DN7345_c0_g1	3537	3558	3548	-23.20	-15.60	0.672413793103448	9	1-4,3558-3555;5-16,3553-3542	x-x,3554-3554[BULt];17-21,3541-3537[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	AAUGUUUACUGUUGCUGCUAAA&UUUA-UAGCAAUAGUAAUUAAU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN7345_c0_g1_3548_TPlot.pdf
TRINITY_DN7346_c0_g1:330	si_s149	TRINITY_DN7346_c0_g1	319	347	330	-37.20	-24.42	0.656451612903226	24	3-7,345-341;10-21,330-319	1-2,347-346[UP5];8-9,340-331[AILt]	((((((((((((..........(((((..&..)))))--------..))))))))))))	CUAUGGACCUCCACCAGGCGUGUGGGUAA&AAACCCA--------AAGGAGGUUCAUGG	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s149_TRINITY_DN7346_c0_g1_330_TPlot.pdf
TRINITY_DN734_c0_g2:1968	si_a547	TRINITY_DN734_c0_g2	1957	1978	1968	-26.90	-18.90	0.702602230483271	6.5	1-4,1978-1975;6-15,1972-1963;17-21,1961-1957	5-5,1974-1973[AILt];16-16,1962-1962[SIL]	(((((.((((((((((..((((&))))-.)))))))))).)))))	AGAUGCAGAAGUAGAUAAGAAC&GUUC-AAUCUAUUUCUUUAUCU	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN734_c0_g2_1968_TPlot.pdf
TRINITY_DN7350_c0_g1:628	si_a312	TRINITY_DN7350_c0_g1	618	637	628	-31.20	-21.28	0.682051282051282	8.5	1-6,637-632;10-14,628-624;16-21,623-618	7-9,631-629[SIL];15-15,x-x[BULq]	((((((-(((((...((((((&))))))...))))).))))))	AGAUCA-GGAUAUUGCCAGGC&GCUUGGAUUUAUCCAUGAUUU	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN7350_c0_g1_628_TPlot.pdf
TRINITY_DN7351_c0_g1:1118	si_a409	TRINITY_DN7351_c0_g1	1107	1127	1118	-19.50	-14.10	0.723076923076923	7.5	1-13,1127-1115;15-20,1113-1108	14-14,1114-1114[SIL];21-21,1107-1107[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AUAUUUAUGUAUGGAUGAAGC&GUUUUGUUUAUAUUUAAAUAA	3	0.999927712443977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7351_c0_g1_1118_TPlot.pdf
TRINITY_DN7351_c0_g1:1844	si_s16	TRINITY_DN7351_c0_g1	1833	1853	1844	-25.60	-17.50	0.68359375	11	3-11,1851-1843;13-20,1841-1834	1-2,1853-1852[UP5];12-12,1842-1842[SIL];21-21,1833-1833[UP3]	.((((((((.(((((((((..&..))))))))).)))))))).	AUGCAGUUAUUGUGGUGGUUU&UUAUUACUAUAUUGAUUGCAA	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN7351_c0_g1_1844_TPlot.pdf
TRINITY_DN7357_c0_g1:1971	si_a148	TRINITY_DN7357_c0_g1	1955	1980	1971	-30.30	-19.90	0.656765676567657	11	1-13,1980-1968;16-20,1960-1956	14-15,1967-1961[AILt];21-21,1955-1955[UP3]	.(((((.......(((((((((((((&)))))))))))))-----..))))).	CUGGCCGAAUCUCAAAGCGACAACGG&UCGUUGUUGUUUU-----AAGGUCAA	4	0.999999942932217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN7357_c0_g1_1971_TPlot.pdf
TRINITY_DN7357_c0_g1:1974	si_a145	TRINITY_DN7357_c0_g1	1963	1983	1974	-28.10	-20.10	0.715302491103203	7	3-16,1981-1968;18-21,1966-1963	1-2,1983-1982[UP5];17-17,1967-1967[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	AUCUCAAAGCGACAACGGUGG&UAAUCGUUGUUGUUUUAAGGU	1	0.029612978572272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN7357_c0_g1_1974_TPlot.pdf
TRINITY_DN7357_c0_g1:2007	si_a628	TRINITY_DN7357_c0_g1	1996	2017	2007	-27.10	-17.82	0.657564575645756	11	1-6,2017-2012;10-20,2007-1997	7-9,2011-2008[AILt];21-21,1996-1996[UP3]	.(((((((((((....((((((&))))))-...))))))))))).	CGAAAAGUCGACCUCCAUAUGC&GCGUAU-UAUGUCGAUUUUUUU	2	0.999953766751949	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN7357_c0_g1_2007_TPlot.pdf
TRINITY_DN735_c0_g1:390	si_a488	TRINITY_DN735_c0_g1	379	399	390	-26.40	-17.40	0.659090909090909	11	4-9,396-391;12-21,388-379	1-3,399-397[UP5];10-11,390-389[SIL]	((((((((((..((((((...&...))))))..))))))))))	GAGAAGCGACCGGUUCUACUA&AUAUAGAAUAUGUCGUUUUUC	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN735_c0_g1_390_TPlot.pdf
TRINITY_DN735_c0_g1:853	si_s70	TRINITY_DN735_c0_g1	842	863	853	-25.80	-17.30	0.670542635658915	7.5	2-3,862-861;5-9,859-855;10-21,853-842	1-1,863-863[UP5];4-4,860-860[SIL];x-x,854-854[BULt]	((((((((((((.(((((.((.&.)).)))))-))))))))))))	GGGAAGAAAAAAUGAUAGCGGA&ACUUCUAUU-UUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN735_c0_g1_853_TPlot.pdf
TRINITY_DN7360_c0_g1:1320	si_s73	TRINITY_DN7360_c0_g1	1309	1329	1320	-24.00	-16.40	0.683333333333333	8	3-8,1327-1322;10-21,1320-1309	1-2,1329-1328[UP5];9-9,1321-1321[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AAGGGGAAGGAAUAAAGUAUC&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7360_c0_g1_1320_TPlot.pdf
TRINITY_DN7360_c0_g1:940	si_s69	TRINITY_DN7360_c0_g1	929	947	940	-23.40	-16.40	0.700854700854701	9	3-7,945-941;10-21,940-929	1-2,947-946[UP5];8-9,x-x[BULq]	((((((((((((--(((((..&..)))))..))))))))))))	GAAAGAAAAAGA--GGAAGGG&AACUUCUAUUUUUUUUCUUUC	0	0.62113534222819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7360_c0_g1_940_TPlot.pdf
TRINITY_DN7360_c0_g1:944	si_s83	TRINITY_DN7360_c0_g1	933	953	944	-30.90	-20.30	0.656957928802589	8.5	4-17,950-937;19-21,935-933	1-3,953-951[UP5];18-18,936-936[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GAAAAAGAGGAAGGGAGAUUC&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7360_c0_g1_944_TPlot.pdf
TRINITY_DN7368_c0_g1:386	si_a768	TRINITY_DN7368_c0_g1	375	393	386	-28.40	-19.28	0.67887323943662	9.5	1-3,393-391;8-21,388-375	4-7,390-389[AILq]	((((((((((((((..--(((&)))....))))))))))))))	AGGGUUGAAUCAAUAU--AGC&GUUUUUGAUUGAUUCAACUCU	0	0.107355993174512	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN7368_c0_g1_386_TPlot.pdf
TRINITY_DN736_c0_g1:2111	si_a756	TRINITY_DN736_c0_g1	2100	2120	2111	-33.10	-22.40	0.676737160120846	10.5	3-8,2118-2113;10-18,2111-2103	1-2,2120-2119[UP5];9-9,2112-2112[SIL];19-21,2102-2100[UP3]	...(((((((((.((((((..&..)))))).)))))))))...	AGAAGAGGCCCGCAGGAGGAU&AACCUCCUUUGGGUUUUUGAU	3	0.999998739031866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN736_c0_g1_2111_TPlot.pdf
TRINITY_DN736_c0_g1:2114	si_a753	TRINITY_DN736_c0_g1	2103	2123	2114	-33.10	-23.60	0.712990936555891	9	3-4,2121-2120;6-11,2118-2113;13-21,2111-2103	1-2,2123-2122[UP5];5-5,2119-2119[SIL];12-12,2112-2112[SIL]	(((((((((.((((((.((..&..)).)))))).)))))))))	AGAGGCCCGCAGGAGGAUCGA&AUGAACCUCCUUUGGGUUUUU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN736_c0_g1_2114_TPlot.pdf
TRINITY_DN736_c0_g1:2517	si_a499	TRINITY_DN736_c0_g1	2501	2526	2517	-35.20	-24.30	0.690340909090909	15	1-3,2526-2524;5-11,2522-2516;12-20,2510-2502	4-4,2523-2523[SIL];x-x,2515-2511[BULt];21-21,2501-2501[UP3]	.(((((((((.....(((((((.(((&))).)))))))-----))))))))).	GCGAGGAGGAAUCGUCGAAGAAGGAC&GUCGUUUUUCG-----UCUUCCUUGG	4	0.999998416077658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN736_c0_g1_2517_TPlot.pdf
TRINITY_DN736_c0_g1:2816	si_a54	TRINITY_DN736_c0_g1	2805	2825	2816	-37.30	-24.46	0.655764075067024	9.5	2-8,2824-2818;13-21,2813-2805	1-1,2825-2825[UP5];9-12,2817-2814[SIL]	(((((((((....(((((((.&.)))))))....)))))))))	GAAGAAGCGCCAGGACUCCUC&UAGGAGUCGACUCGCUUCUUU	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN736_c0_g1_2816_TPlot.pdf
TRINITY_DN736_c0_g1:2846	si_s83	TRINITY_DN736_c0_g1	2835	2855	2846	-30.90	-20.90	0.676375404530744	7	1-6,2855-2850;9-21,2847-2835	7-8,2849-2848[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GGAGAAGGAGAAGCCGAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN736_c0_g1_2846_TPlot.pdf
TRINITY_DN736_c0_g1:2888	si_a145	TRINITY_DN736_c0_g1	2877	2897	2888	-28.10	-19.20	0.683274021352313	8.5	3-15,2895-2883;17-20,2881-2878	1-2,2897-2896[UP5];16-16,2882-2882[SIL];21-21,2877-2877[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	UUCUUCGGACAGCGACGAUGA&UAAUCGUUGUUGUUUUAAGGU	2	0.980657087003412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN736_c0_g1_2888_TPlot.pdf
TRINITY_DN736_c0_g1:2892	si_a141	TRINITY_DN736_c0_g1	2881	2901	2892	-23.80	-16.60	0.697478991596639	15.5	7-19,2895-2883	1-6,2901-2896[UP5];20-21,2882-2881[UP3]	..(((((((((((((......&......)))))))))))))..	UCGGACAGCGACGAUGACUCU&UAAUUAAUCGUUGUUGUUUUA	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN736_c0_g1_2892_TPlot.pdf
TRINITY_DN736_c0_g1:2972	si_s77	TRINITY_DN736_c0_g1	2956	2981	2972	-25.50	-16.80	0.658823529411765	11.5	1-11,2981-2971;12-14,2966-2964;15-21,2962-2956	x-x,2970-2967[BULt];x-x,2963-2963[BULt]	(((((((.(((....(((((((((((&)))))))))))----)))-)))))))	GAGGAGGUGGAAACCAAGAAGAAAAA&UUUUUUUUCUU----UCC-UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN736_c0_g1_2972_TPlot.pdf
TRINITY_DN736_c0_g1:3042	si_s88	TRINITY_DN736_c0_g1	3030	3053	3042	-34.80	-24.10	0.692528735632184	6	1-4,3053-3050;5-15,3047-3037;17-21,3034-3030	x-x,3049-3048[BULt];16-16,3036-3035[AILt]	(((((..(((((((((((..((((&))))--)))))))))))-.)))))	GAAGCAUAAGAAGAAGAAGCAGGA&UCCU--UUCUUCUUCUU-CGCUUC	3	0.999999997627277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN736_c0_g1_3042_TPlot.pdf
TRINITY_DN736_c0_g1:3044	si_s86	TRINITY_DN736_c0_g1	3032	3055	3044	-32.90	-21.90	0.665653495440729	7	1-6,3055-3050;7-17,3047-3037;19-21,3034-3032	x-x,3049-3048[BULt];18-18,3036-3035[AILt]	(((..(((((((((((..((((((&))))))--)))))))))))-.)))	AGCAUAAGAAGAAGAAGCAGGAGA&UUUCCU--UUCUUCUUCUU-CGCU	2	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN736_c0_g1_3044_TPlot.pdf
TRINITY_DN736_c0_g1:3050	si_s82	TRINITY_DN736_c0_g1	3037	3059	3050	-28.90	-21.70	0.750865051903114	10	4-10,3056-3050;11-21,3047-3037	1-3,3059-3057[UP5];x-x,3049-3048[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	AAGAAGAAGAAGCAGGAGAGUGA&UUUCUUUCCU--UUCUUCUUCUU	4	0.999999995206999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN736_c0_g1_3050_TPlot.pdf
TRINITY_DN736_c0_g1:3069	si_a147	TRINITY_DN736_c0_g1	3057	3078	3069	-30.40	-20.70	0.680921052631579	7	1-13,3078-3066;18-21,3060-3057	14-17,3065-3061[AILt]	((((.....(((((((((((((&)))))))))))))-....))))	UGACGAUUCAGACAACAGCGAU&AUCGUUGUUGUUU-UAAGGUCA	4	0.999841912238814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN736_c0_g1_3069_TPlot.pdf
TRINITY_DN736_c0_g1:3070	si_a146	TRINITY_DN736_c0_g1	3058	3079	3070	-29.70	-19.50	0.656565656565657	7.5	2-14,3078-3066;19-21,3060-3058	1-1,3079-3079[UP5];15-18,3065-3061[AILt]	(((.....(((((((((((((.&.)))))))))))))-....)))	GACGAUUCAGACAACAGCGAUA&AAUCGUUGUUGUUU-UAAGGUC	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN736_c0_g1_3070_TPlot.pdf
TRINITY_DN736_c0_g1:3074	si_a142	TRINITY_DN736_c0_g1	3063	3083	3074	-23.50	-16.90	0.719148936170213	13.5	6-18,3078-3066	1-5,3083-3079[UP5];19-21,3065-3063[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUCAGACAACAGCGAUACGGA&AAUUAAUCGUUGUUGUUUUAA	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN736_c0_g1_3074_TPlot.pdf
TRINITY_DN736_c0_g1:3077	si_a139	TRINITY_DN736_c0_g1	3066	3086	3077	-25.90	-16.90	0.652509652509653	16	9-21,3078-3066	1-8,3086-3079[UP5]	(((((((((((((........&........)))))))))))))	AGACAACAGCGAUACGGAGGU&AGUAAUUAAUCGUUGUUGUUU	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN736_c0_g1_3077_TPlot.pdf
TRINITY_DN736_c0_g1:3090	si_a677	TRINITY_DN736_c0_g1	3080	3099	3090	-35.40	-23.40	0.661016949152542	5.5	2-12,3098-3088;14-15,3087-3086;17-21,3084-3080	1-1,3099-3099[UP5];13-13,x-x[BULq];16-16,3085-3085[SIL]	(((((.((-(((((((((((.&.))))))))))).)).)))))	CGGAGGUG-GUGAAUGAGGAC&UUCCUUAUUCACGCGGUUUCG	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a677_TRINITY_DN736_c0_g1_3090_TPlot.pdf
TRINITY_DN736_c0_g1:3115	si_s897	TRINITY_DN736_c0_g1	3103	3124	3115	-31.30	-23.90	0.763578274760383	6	1-11,3124-3114;12-19,3112-3105	x-x,3113-3113[BULt];20-21,3104-3103[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	AAGAAAUUGAGAGAGAAGGCUU&AGGCUUUCUCU-UCAAUUUCAA	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN736_c0_g1_3115_TPlot.pdf
TRINITY_DN736_c0_g1:541	si_s300	TRINITY_DN736_c0_g1	530	558	541	-29.70	-19.90	0.67003367003367	20.5	3-8,556-551;9-21,542-530	1-2,558-557[UP5];x-x,550-543[BULt]	(((((((((((((........((((((..&..))))))--------)))))))))))))	CAGGAUUUUUGCAAAGUAAAAAUUCCAUG&AUUGGAAU--------UGCGAAAAUUCUG	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s300_TRINITY_DN736_c0_g1_541_TPlot.pdf
TRINITY_DN736_c0_g1:599	si_a639	TRINITY_DN736_c0_g1	587	608	599	-23.60	-16.50	0.699152542372881	5.5	2-14,607-595;16-20,592-588	1-1,608-608[UP5];15-15,594-593[AILt];21-21,587-587[UP3]	.(((((..(((((((((((((.&.)))))))))))))-.))))).	UUAUAUCAGCUCAAGAAAAUCC&CGAUUUUUUUGAGU-AAUAUAU	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN736_c0_g1_599_TPlot.pdf
TRINITY_DN736_c0_g1:600	si_a638	TRINITY_DN736_c0_g1	588	609	600	-24.40	-16.40	0.672131147540984	6.5	3-15,607-595;17-21,592-588	1-2,609-608[UP5];16-16,594-593[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	UAUAUCAGCUCAAGAAAAUCCC&UCGAUUUUUUUGAGU-AAUAUA	0	0.252613535607948	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN736_c0_g1_600_TPlot.pdf
TRINITY_DN7371_c0_g2:1330	si_s722	TRINITY_DN7371_c0_g2	1319	1340	1330	-32.90	-21.70	0.659574468085106	7	1-2,1340-1339;3-6,1337-1334;8-10,1332-1330;12-21,1328-1319	x-x,1338-1338[BULt];7-7,1333-1333[SIL];11-11,1329-1329[SIL]	((((((((((.(((.((((.((&))-)))).))).))))))))))	CCGUCUGGGUUAUAACUUUGCC&GG-AAAGAUAUUAUCUAGACGG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s722_TRINITY_DN7371_c0_g2_1330_TPlot.pdf
TRINITY_DN7374_c0_g1:2584	si_s76	TRINITY_DN7374_c0_g1	2573	2593	2584	-23.60	-19.70	0.834745762711864	11.5	6-21,2588-2573	1-5,2593-2589[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGAAGGGAGAGAAAGUCAGG&AUUUUUUUUCUUUCCUUUCUU	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7374_c0_g1_2584_TPlot.pdf
TRINITY_DN7375_c0_g1:389	si_a153	TRINITY_DN7375_c0_g1	378	397	389	-28.70	-19.00	0.662020905923345	13	1-5,397-393;11-19,388-380	6-10,392-389[AILq];20-21,379-378[UP3]	..(((((((((....-(((((&))))).....)))))))))..	GGAGAUUGACCAUUU-GCAAC&GUUGUUUUAAGGUCAAUCUAU	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN7375_c0_g1_389_TPlot.pdf
TRINITY_DN7375_c0_g1:390	si_a152	TRINITY_DN7375_c0_g1	379	398	390	-29.20	-20.00	0.684931506849315	12	1-6,398-393;12-20,388-380	7-11,392-389[AILq];21-21,379-379[UP3]	.(((((((((....-((((((&)))))).....))))))))).	GAGAUUGACCAUUU-GCAACA&UGUUGUUUUAAGGUCAAUCUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN7375_c0_g1_390_TPlot.pdf
TRINITY_DN7375_c0_g1:391	si_a151	TRINITY_DN7375_c0_g1	380	399	391	-28.90	-20.50	0.709342560553633	11	1-7,399-393;13-21,388-380	8-12,392-389[AILq]	(((((((((....-(((((((&))))))).....)))))))))	AGAUUGACCAUUU-GCAACAA&UUGUUGUUUUAAGGUCAAUCU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN7375_c0_g1_391_TPlot.pdf
TRINITY_DN7375_c0_g1:955	si_a411	TRINITY_DN7375_c0_g1	944	964	955	-17.90	-12.70	0.709497206703911	10	1-14,964-951	15-21,950-944[UP3]	.......((((((((((((((&)))))))))))))).......	AGUUUUCUAAAUGUGAACAGA&UUUGUUUAUAUUUAAAUAAAU	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN7375_c0_g1_955_TPlot.pdf
TRINITY_DN7375_c0_g1:956	si_a410	TRINITY_DN7375_c0_g1	945	965	956	-17.80	-12.90	0.724719101123595	10	2-15,964-951	1-1,965-965[UP5];16-21,950-945[UP3]	......((((((((((((((.&.))))))))))))))......	GUUUUCUAAAUGUGAACAGAG&UUUUGUUUAUAUUUAAAUAAA	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7375_c0_g1_956_TPlot.pdf
TRINITY_DN7375_c0_g1:957	si_a409	TRINITY_DN7375_c0_g1	946	966	957	-19.50	-13.30	0.682051282051282	10	2-16,965-951	1-1,966-966[UP5];17-21,950-946[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUUCUAAAUGUGAACAGAGA&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999236631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7375_c0_g1_957_TPlot.pdf
TRINITY_DN7375_c0_g1:958	si_a408	TRINITY_DN7375_c0_g1	947	967	958	-20.10	-13.30	0.661691542288557	11	3-17,965-951	1-2,967-966[UP5];18-21,950-947[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUCUAAAUGUGAACAGAGAG&UGUUUUGUUUAUAUUUAAAUA	2	0.999999994630912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN7375_c0_g1_958_TPlot.pdf
TRINITY_DN7375_c0_g1:959	si_a407	TRINITY_DN7375_c0_g1	948	968	959	-19.80	-13.30	0.671717171717172	11.5	4-18,965-951	1-3,968-966[UP5];19-21,950-948[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUCUAAAUGUGAACAGAGAGU&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN7375_c0_g1_959_TPlot.pdf
TRINITY_DN7375_c0_g1:960	si_a406	TRINITY_DN7375_c0_g1	949	969	960	-19.80	-13.30	0.671717171717172	12.5	5-19,965-951	1-4,969-966[UP5];20-21,950-949[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCUAAAUGUGAACAGAGAGUG&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN7375_c0_g1_960_TPlot.pdf
TRINITY_DN7377_c0_g1:1219	si_s73	TRINITY_DN7377_c0_g1	1208	1230	1219	-24.00	-15.98	0.665833333333333	14.5	1-8,1230-1223;11-18,1218-1211	9-10,1222-1219[AILt];19-21,1210-1208[UP3]	...((((((((....((((((((&))))))))--..))))))))...	UAUGGAGAGGAUAUUGGAAUAGA&UCUAUUUU--UUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7377_c0_g1_1219_TPlot.pdf
TRINITY_DN7377_c0_g1:1220	si_s72	TRINITY_DN7377_c0_g1	1209	1231	1220	-24.10	-16.38	0.679668049792531	13.5	1-9,1231-1223;12-19,1218-1211	10-11,1222-1219[AILt];20-21,1210-1209[UP3]	..((((((((....(((((((((&)))))))))--..))))))))..	AUGGAGAGGAUAUUGGAAUAGAG&UUCUAUUUU--UUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7377_c0_g1_1220_TPlot.pdf
TRINITY_DN7377_c0_g1:1297	si_a703	TRINITY_DN7377_c0_g1	1286	1307	1297	-29.20	-20.00	0.684931506849315	8	1-9,1307-1299;11-17,1296-1290	10-10,1298-1297[AILt];18-21,1289-1286[UP3]	....(((((((..(((((((((&)))))))))-.)))))))....	UUUAUUUGGAAAAGUACCAGUU&AACUGGUAC-AUUCCAAAAUAA	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN7377_c0_g1_1297_TPlot.pdf
TRINITY_DN7377_c0_g1:1299	si_a702	TRINITY_DN7377_c0_g1	1287	1308	1299	-30.80	-20.10	0.652597402597403	8	2-10,1307-1299;12-18,1296-1290	1-1,1308-1308[UP5];11-11,1298-1297[AILt];19-21,1289-1287[UP3]	...(((((((..(((((((((.&.)))))))))-.)))))))...	UUAUUUGGAAAAGUACCAGUUU&CAACUGGUAC-AUUCCAAAAUA	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a702_TRINITY_DN7377_c0_g1_1299_TPlot.pdf
TRINITY_DN7377_c0_g1:3565	si_a634	TRINITY_DN7377_c0_g1	3553	3574	3565	-26.40	-17.70	0.670454545454545	4.5	1-15,3574-3560;16-18,3558-3556	x-x,3559-3559[BULt];19-21,3555-3553[UP3]	...(((.(((((((((((((((&)))))))))))))))-)))...	UAUCUUAAAAAAAAUCGACAUA&UAUGUCGAUUUUUUU-GAGUAA	2	0.999966129464633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN7377_c0_g1_3565_TPlot.pdf
TRINITY_DN7377_c0_g1:3566	si_a633	TRINITY_DN7377_c0_g1	3554	3575	3566	-26.40	-17.90	0.678030303030303	4.5	2-16,3574-3560;17-19,3558-3556	1-1,3575-3575[UP5];x-x,3559-3559[BULt];20-21,3555-3554[UP3]	..(((.(((((((((((((((.&.)))))))))))))))-)))..	AUCUUAAAAAAAAUCGACAUAU&UUAUGUCGAUUUUUUU-GAGUA	2	0.999822692898121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN7377_c0_g1_3566_TPlot.pdf
TRINITY_DN7377_c0_g1:3569	si_a630	TRINITY_DN7377_c0_g1	3558	3578	3569	-25.80	-17.20	0.666666666666667	9	5-19,3574-3560	1-4,3578-3575[UP5];20-21,3559-3558[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAAAAAAAAUCGACAUAUGGA&GUAUUAUGUCGAUUUUUUUGA	2	0.999751875834929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN7377_c0_g1_3569_TPlot.pdf
TRINITY_DN7377_c0_g1:3570	si_a629	TRINITY_DN7377_c0_g1	3559	3579	3570	-26.30	-17.20	0.653992395437262	10	6-20,3574-3560	1-5,3579-3575[UP5];21-21,3559-3559[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAAAAAAAUCGACAUAUGGAG&CGUAUUAUGUCGAUUUUUUUG	3	0.999998927568074	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN7377_c0_g1_3570_TPlot.pdf
TRINITY_DN7377_c0_g1:4052	si_a633	TRINITY_DN7377_c0_g1	4039	4061	4052	-26.40	-18.14	0.687121212121212	11.5	1-11,4061-4051;16-20,4044-4040	12-15,4050-4045[AILt];21-21,4039-4039[UP3]	.(((((......(((((((((((&)))))))))))--....))))).	GGCUCAUGCUAUAAUCGGCAUAA&UUAUGUCGAUU--UUUUUGAGUA	2	0.999361043358898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN7377_c0_g1_4052_TPlot.pdf
TRINITY_DN7378_c0_g1:200	si_a789	TRINITY_DN7378_c0_g1	188	210	200	-24.80	-16.50	0.665322580645161	7	1-9,210-202;10-14,200-196;15-19,194-190	x-x,201-201[BULt];x-x,195-195[BULt];20-21,189-188[UP3]	..(((((.(((((.(((((((((&)))))))))-)))))-)))))..	UGUGGAACAAUGGAAAAAGUAGA&UCUAUUUUU-CUAUU-UUCCAAU	2	0.999999919042966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN7378_c0_g1_200_TPlot.pdf
TRINITY_DN7378_c0_g1:202	si_a788	TRINITY_DN7378_c0_g1	189	211	202	-24.80	-17.40	0.701612903225806	6	1-10,211-202;11-15,200-196;16-20,194-190	x-x,201-201[BULt];x-x,195-195[BULt];21-21,189-189[UP3]	.(((((.(((((.((((((((((&))))))))))-)))))-))))).	GUGGAACAAUGGAAAAAGUAGAA&UUCUAUUUUU-CUAUU-UUCCAA	3	0.99999920842371	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7378_c0_g1_202_TPlot.pdf
TRINITY_DN7378_c0_g1:204	si_a786	TRINITY_DN7378_c0_g1	191	213	204	-26.60	-20.10	0.755639097744361	4.5	1-12,213-202;13-17,200-196;18-21,194-191	x-x,201-201[BULt];x-x,195-195[BULt]	((((.(((((.((((((((((((&))))))))))))-)))))-))))	GGAACAAUGGAAAAAGUAGAAGA&UCUUCUAUUUUU-CUAUU-UUCC	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7378_c0_g1_204_TPlot.pdf
TRINITY_DN7378_c0_g1:205	si_a785	TRINITY_DN7378_c0_g1	192	214	205	-25.90	-17.20	0.664092664092664	4.5	2-13,213-202;14-18,200-196;19-21,194-192	1-1,214-214[UP5];x-x,201-201[BULt];x-x,195-195[BULt]	(((.(((((.((((((((((((.&.))))))))))))-)))))-)))	GAACAAUGGAAAAAGUAGAAGAU&CUCUUCUAUUUUU-CUAUU-UUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7378_c0_g1_205_TPlot.pdf
TRINITY_DN7378_c0_g1:208	si_a782	TRINITY_DN7378_c0_g1	196	217	208	-26.40	-17.80	0.674242424242424	4.5	1-3,217-215;5-16,213-202;17-21,200-196	4-4,214-214[SIL];x-x,201-201[BULt]	(((((.((((((((((((.(((&))).))))))))))))-)))))	AAUGGAAAAAGUAGAAGAUUUG&CAACUCUUCUAUUUUU-CUAUU	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN7378_c0_g1_208_TPlot.pdf
TRINITY_DN7378_c0_g1:209	si_a781	TRINITY_DN7378_c0_g1	197	218	209	-27.40	-18.40	0.671532846715328	4	1-4,218-215;6-17,213-202;18-21,200-197	5-5,214-214[SIL];x-x,201-201[BULt]	((((.((((((((((((.((((&)))).))))))))))))-))))	AUGGAAAAAGUAGAAGAUUUGA&UCAACUCUUCUAUUUUU-CUAU	4	0.99998263567328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN7378_c0_g1_209_TPlot.pdf
TRINITY_DN7381_c0_g1:4933	si_a795	TRINITY_DN7381_c0_g1	4922	4942	4933	-30.20	-20.00	0.662251655629139	8.5	3-14,4940-4929;16-19,4927-4924	1-2,4942-4941[UP5];15-15,4928-4928[SIL];20-21,4923-4922[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UAUUGGUUUGGAGAGUAGACA&UUUCUAUUUUCCAAUCCGAAG	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN7381_c0_g1_4933_TPlot.pdf
TRINITY_DN7381_c0_g1:4935	si_a793	TRINITY_DN7381_c0_g1	4924	4944	4935	-28.50	-19.80	0.694736842105263	10.5	5-16,4940-4929;18-21,4927-4924	1-4,4944-4941[UP5];17-17,4928-4928[SIL]	((((.((((((((((((....&....)))))))))))).))))	UUGGUUUGGAGAGUAGACAUA&UUUUUCUAUUUUCCAAUCCGA	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7381_c0_g1_4935_TPlot.pdf
TRINITY_DN7381_c0_g1:5433	si_s618	TRINITY_DN7381_c0_g1	5423	5442	5433	-30.30	-19.80	0.653465346534653	10.5	5-13,5438-5430;15-21,5429-5423	1-4,5442-5439[UP5];14-14,x-x[BULq]	(((((((-(((((((((....&....))))))))).)))))))	GAGGGGA-CGUUUGGAUGCGA&UUAAAUCCAAGCGAUCUUUUC	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN7381_c0_g1_5433_TPlot.pdf
TRINITY_DN7382_c0_g1:2601	si_a788	TRINITY_DN7382_c0_g1	2590	2610	2601	-24.80	-17.10	0.689516129032258	7.5	2-6,2609-2605;8-12,2603-2599;14-20,2597-2591	1-1,2610-2610[UP5];7-7,2604-2604[SIL];13-13,2598-2598[SIL];21-21,2590-2590[UP3]	.(((((((.(((((.(((((.&.))))).))))).))))))).	CUGGAGAAAAGAGACGUAGAU&UUCUAUUUUUCUAUUUUCCAA	4	0.99999997500826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7382_c0_g1_2601_TPlot.pdf
TRINITY_DN7382_c0_g3:971	si_a403	TRINITY_DN7382_c0_g3	960	980	971	-22.00	-14.90	0.677272727272727	7	2-17,979-964	1-1,980-980[UP5];18-21,963-960[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUGAAUAAAUAAAAUAAUUCA&AGAAUUGUUUUGUUUAUAUUU	2	0.999997359191917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7382_c0_g3_971_TPlot.pdf
TRINITY_DN7382_c0_g3:972	si_a402	TRINITY_DN7382_c0_g3	961	981	972	-22.40	-14.90	0.665178571428572	7.5	3-18,979-964	1-2,981-980[UP5];19-21,963-961[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGAAUAAAUAAAAUAAUUCAC&UAGAAUUGUUUUGUUUAUAUU	4	0.999999999942173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN7382_c0_g3_972_TPlot.pdf
TRINITY_DN7382_c0_g3:974	si_a400	TRINITY_DN7382_c0_g3	963	983	974	-22.80	-14.90	0.653508771929825	9.5	5-20,979-964	1-4,983-980[UP5];21-21,963-963[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUAAAUAAAAUAAUUCACAC&UAUAGAAUUGUUUUGUUUAUA	2	0.999999754909921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN7382_c0_g3_974_TPlot.pdf
TRINITY_DN7384_c0_g1:2130	si_a140	TRINITY_DN7384_c0_g1	2119	2138	2130	-25.20	-16.40	0.650793650793651	16	1-2,2138-2137;8-21,2132-2119	3-7,2136-2133[AILq]	((((((((((((((....-((&)).....))))))))))))))	GAGGCGGCGGCGGUGGCG-GC&GUAAUUAAUCGUUGUUGUUUU	3	0.999999999480169	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN7384_c0_g1_2130_TPlot.pdf
TRINITY_DN7384_c0_g1:2564	si_a73	TRINITY_DN7384_c0_g1	2553	2573	2564	-21.90	-15.10	0.689497716894977	11.5	7-21,2567-2553	1-6,2573-2568[UP5]	(((((((((((((((......&......)))))))))))))))	AAUGAUGAAAAACAAAAAAAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN7384_c0_g1_2564_TPlot.pdf
TRINITY_DN7385_c0_g2:1189	si_s9	TRINITY_DN7385_c0_g2	1178	1198	1189	-22.90	-14.90	0.650655021834061	8	2-9,1197-1190;11-19,1188-1180	1-1,1198-1198[UP5];10-10,1189-1189[SIL];20-21,1179-1178[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AUGUGUAGUAGAAAUAAGUGU&UUACUUAUUAUUACUAUAUUG	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN7385_c0_g2_1189_TPlot.pdf
TRINITY_DN738_c0_g1:1563	si_a899	TRINITY_DN738_c0_g1	1552	1577	1563	-18.70	-12.30	0.657754010695187	12.5	1-8,1577-1570;9-19,1564-1554	x-x,1569-1565[BULt];20-21,1553-1552[UP3]	..(((((((((((.....((((((((&))))))))-----)))))))))))..	UAUUUAUGUUACUUCAAAUAUUAUUA&UAAUAAUA-----AGUAAUAUAAAAA	3	0.999801091473839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN738_c0_g1_1563_TPlot.pdf
TRINITY_DN738_c0_g1:1571	si_a896	TRINITY_DN738_c0_g1	1555	1580	1571	-21.60	-14.80	0.685185185185185	13.5	3-11,1578-1570;12-21,1564-1555	1-2,1580-1579[UP5];x-x,1569-1565[BULt]	((((((((((.....(((((((((..&..)))))))))-----))))))))))	UUAUGUUACUUCAAAUAUUAUUACGA&UAGUAAUAAUA-----AGUAAUAUAA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN738_c0_g1_1571_TPlot.pdf
TRINITY_DN738_c0_g1:1679	si_s64	TRINITY_DN738_c0_g1	1668	1688	1679	-24.10	-17.60	0.730290456431535	6	1-5,1688-1684;7-15,1682-1674;18-21,1671-1668	6-6,1683-1683[SIL];16-17,1673-1672[SIL]	((((..(((((((((.(((((&))))).)))))))))..))))	GAAAUUAGUAGGAGUCGCUAA&UUAGCAACUUCUAUUUUUUUU	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN738_c0_g1_1679_TPlot.pdf
TRINITY_DN738_c0_g3:2162	si_s70	TRINITY_DN738_c0_g3	2151	2171	2162	-25.80	-16.80	0.651162790697674	12	5-9,2167-2163;11-21,2161-2151	1-4,2171-2168[UP5];10-10,2162-2162[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GGAAAGAAAGAUGAUGGCACC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN738_c0_g3_2162_TPlot.pdf
TRINITY_DN738_c0_g3:2248	si_s488	TRINITY_DN738_c0_g3	2237	2257	2248	-18.30	-12.00	0.655737704918033	9	4-8,2254-2250;10-20,2248-2238	1-3,2257-2255[UP5];9-9,2249-2249[SIL];21-21,2237-2237[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUGUUUAUAUUUUGAUAACUA&UAUUUAUUUAAAUAUAAACAA	3	0.999820239439447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN738_c0_g3_2248_TPlot.pdf
TRINITY_DN738_c0_g3:2426	si_a792	TRINITY_DN738_c0_g3	2414	2435	2426	-27.60	-18.00	0.652173913043478	6	1-13,2435-2423;14-16,2421-2419;19-20,2416-2415	x-x,2422-2422[BULt];17-18,2418-2417[SIL];21-21,2414-2414[UP3]	.((..(((.(((((((((((((&)))))))))))))-)))..)).	AGGUCUGGCAAAAUGGAAAGAU&AUUUUUCUAUUUU-CCAAUCCG	4	0.999999908254907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN738_c0_g3_2426_TPlot.pdf
TRINITY_DN738_c0_g3:2435	si_a783	TRINITY_DN738_c0_g3	2424	2444	2435	-24.70	-20.70	0.838056680161943	7.5	4-21,2441-2424	1-3,2444-2442[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAAUGGAAAGAUAGAGGAACA&AACUCUUCUAUUUUUCUAUUU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN738_c0_g3_2435_TPlot.pdf
TRINITY_DN738_c0_g6:1340	si_a407	TRINITY_DN738_c0_g6	1329	1350	1340	-19.80	-13.30	0.671717171717172	6	1-9,1350-1342;10-16,1340-1334;19-21,1331-1329	x-x,1341-1341[BULt];17-18,1333-1332[SIL]	(((..(((((((.(((((((((&)))))))))-)))))))..)))	AUUGUAAUAUGAUGCAAAACAA&UUGUUUUGU-UUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN738_c0_g6_1340_TPlot.pdf
TRINITY_DN738_c0_g6:1342	si_a406	TRINITY_DN738_c0_g6	1330	1351	1342	-19.80	-13.10	0.661616161616162	6	1-10,1351-1342;11-17,1340-1334;20-21,1331-1330	x-x,1341-1341[BULt];18-19,1333-1332[SIL]	((..(((((((.((((((((((&))))))))))-)))))))..))	UUGUAAUAUGAUGCAAAACAAU&AUUGUUUUGU-UUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN738_c0_g6_1342_TPlot.pdf
TRINITY_DN7391_c0_g1:494	si_a71	TRINITY_DN7391_c0_g1	483	503	494	-23.30	-17.40	0.746781115879828	5.5	1-16,503-488	17-21,487-483[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUGGAAGAAACAAUUUGAAAG&CUUUCAAAUUGUUUUUCAUUA	2	0.942880758011344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN7391_c0_g1_494_TPlot.pdf
TRINITY_DN7391_c0_g1:496	si_a69	TRINITY_DN7391_c0_g1	485	505	496	-24.00	-19.90	0.829166666666667	3.5	1-18,505-488	19-21,487-485[UP3]	...((((((((((((((((((&))))))))))))))))))...	GGAAGAAACAAUUUGAAAGAA&UUCUUUCAAAUUGUUUUUCAU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN7391_c0_g1_496_TPlot.pdf
TRINITY_DN7391_c0_g1:502	si_a63	TRINITY_DN7391_c0_g1	491	511	502	-30.20	-23.40	0.774834437086093	7	5-21,507-491	1-4,511-508[UP5]	(((((((((((((((((....&....)))))))))))))))))	AACAAUUUGAAAGAAGCCCAG&ACUCGCUUCUUUCAAAUUGUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN7391_c0_g1_502_TPlot.pdf
TRINITY_DN7393_c0_g1:3076	si_a767	TRINITY_DN7393_c0_g1	3065	3087	3076	-30.10	-20.30	0.674418604651163	11	1-9,3087-3079;10-19,3076-3067	x-x,3078-3077[BULt];20-21,3066-3065[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	ACGUUGAAUCGGCUUUAAGAGCC&GGUUUUUGA--UUGAUUCAACUC	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN7393_c0_g1_3076_TPlot.pdf
TRINITY_DN7393_c0_g1:3106	si_s69	TRINITY_DN7393_c0_g1	3095	3115	3106	-23.40	-16.20	0.692307692307692	8.5	3-8,3113-3108;10-20,3106-3096	1-2,3115-3114[UP5];9-9,3107-3107[SIL];21-21,3095-3095[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGAGGAAAGAAGUUAGAAGAC&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7393_c0_g1_3106_TPlot.pdf
TRINITY_DN7399_c0_g1:365	si_a646	TRINITY_DN7399_c0_g1	350	374	365	-29.40	-19.76	0.672108843537415	14.5	1-10,374-365;13-20,358-351	11-12,364-359[AILt];21-21,350-350[UP3]	.((((((((......((((((((((&))))))))))----..)))))))).	CUUCCCGGUCUUUCAAUUGCUCAAA&UUUGAGUAAU----AUAUCGGGAAA	4	0.960869394454846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN7399_c0_g1_365_TPlot.pdf
TRINITY_DN739_c0_g1:37	si_a883	TRINITY_DN739_c0_g1	26	47	37	-27.20	-19.00	0.698529411764706	8.5	1-8,47-40;10-21,37-26	9-9,39-38[AILt]	((((((((((((..((((((((&))))))))-.))))))))))))	UGUUAUUGUGUUUUGUUGCAGC&GUUGCAAU-CAAUAUAGUAAUA	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a883_TRINITY_DN739_c0_g1_37_TPlot.pdf
TRINITY_DN739_c0_g1:38	si_a882	TRINITY_DN739_c0_g1	27	48	38	-27.50	-18.00	0.654545454545455	9	2-9,47-40;11-21,37-27	1-1,48-48[UP5];10-10,39-38[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GUUAUUGUGUUUUGUUGCAGCA&AGUUGCAAU-CAAUAUAGUAAU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a882_TRINITY_DN739_c0_g1_38_TPlot.pdf
TRINITY_DN739_c0_g1:491	si_a758	TRINITY_DN739_c0_g1	480	500	491	-34.00	-23.20	0.682352941176471	9.5	1-11,500-490;14-18,487-483	12-13,489-488[SIL];19-21,482-480[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	CCUUCAGAUUCCUGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN739_c0_g1_491_TPlot.pdf
TRINITY_DN739_c0_g1:493	si_a756	TRINITY_DN739_c0_g1	482	502	493	-33.10	-23.80	0.719033232628399	9.5	3-13,500-490;16-20,487-483	1-2,502-501[UP5];14-15,489-488[SIL];21-21,482-482[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	UUCAGAUUCCUGGAGGAGGCG&AACCUCCUUUGGGUUUUUGAU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN739_c0_g1_493_TPlot.pdf
TRINITY_DN739_c0_g1:644	si_a319	TRINITY_DN739_c0_g1	632	653	644	-22.40	-15.70	0.700892857142857	9.5	1-10,653-644;11-11,642-642;14-21,639-632	x-x,643-643[BULt];12-13,641-640[SIL]	((((((((..(.((((((((((&))))))))))-)..))))))))	GGUGGAGAUUUACAUGGAUGGA&UUUAUCCAUG-AUUUUUUUAUU	3	0.999999977554128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN739_c0_g1_644_TPlot.pdf
TRINITY_DN739_c0_g1:645	si_a318	TRINITY_DN739_c0_g1	633	654	645	-22.50	-15.40	0.684444444444444	9	2-11,653-644;12-12,642-642;15-21,639-633	1-1,654-654[UP5];x-x,643-643[BULt];13-14,641-640[SIL]	(((((((..(.((((((((((.&.))))))))))-)..)))))))	GUGGAGAUUUACAUGGAUGGAA&AUUUAUCCAUG-AUUUUUUUAU	3	0.999999997940772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN739_c0_g1_645_TPlot.pdf
TRINITY_DN739_c0_g1:657	si_s528	TRINITY_DN739_c0_g1	646	665	657	-29.40	-20.10	0.683673469387755	6.5	1-7,665-659;9-15,658-652;17-20,650-647	8-8,x-x[BULq];16-16,651-651[SIL];21-21,646-646[UP3]	.((((.(((((((-(((((((&))))))).))))))).)))).	UGGAUGGAAGGUG-UUUCGAA&UUCGAAAUCAUUUUUGAUCCG	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN739_c0_g1_657_TPlot.pdf
TRINITY_DN739_c0_g1:658	si_s527	TRINITY_DN739_c0_g1	647	666	658	-28.00	-20.40	0.728571428571429	5	1-8,666-659;10-16,658-652;18-21,650-647	9-9,x-x[BULq];17-17,651-651[SIL]	((((.(((((((-((((((((&)))))))).))))))).))))	GGAUGGAAGGUG-UUUCGAAU&AUUCGAAAUCAUUUUUGAUCC	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN739_c0_g1_658_TPlot.pdf
TRINITY_DN739_c0_g1:816	si_a758	TRINITY_DN739_c0_g1	805	825	816	-34.00	-23.70	0.697058823529412	9	1-11,825-815;14-18,812-808	12-13,814-813[SIL];19-21,807-805[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	CCUUCAAAUUCCUGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.997501795172126	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN739_c0_g1_816_TPlot.pdf
TRINITY_DN739_c0_g1:818	si_a756	TRINITY_DN739_c0_g1	807	827	818	-33.10	-23.70	0.716012084592145	9	3-13,825-815;16-20,812-808	1-2,827-826[UP5];14-15,814-813[SIL];21-21,807-807[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	UUCAAAUUCCUGGAGGAGGAG&AACCUCCUUUGGGUUUUUGAU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN739_c0_g1_818_TPlot.pdf
TRINITY_DN739_c0_g1:819	si_a755	TRINITY_DN739_c0_g1	808	828	819	-34.90	-23.60	0.67621776504298	10	4-14,825-815;17-21,812-808	1-3,828-826[UP5];15-16,814-813[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	UCAAAUUCCUGGAGGAGGAGU&GAACCUCCUUUGGGUUUUUGA	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN739_c0_g1_819_TPlot.pdf
TRINITY_DN739_c0_g1:837	si_a149	TRINITY_DN739_c0_g1	827	845	837	-29.40	-20.60	0.700680272108844	9	1-2,845-844;4-9,842-837;12-21,836-827	3-3,843-843[SIL];10-11,x-x[BULq]	((((((((((--((((((.((&)).))))))..))))))))))	GUUGGCCUUG--GCAACAUCG&CGUUGUUGUUUUAAGGUCAAU	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN739_c0_g1_837_TPlot.pdf
TRINITY_DN739_c0_g1:840	si_a145	TRINITY_DN739_c0_g1	831	849	840	-28.10	-18.40	0.654804270462633	7	1-6,849-844;8-13,842-837;16-21,836-831	7-7,843-843[SIL];14-15,x-x[BULq]	((((((--((((((.((((((&)))))).))))))..))))))	GCCUUG--GCAACAUCGGUUG&UAAUCGUUGUUGUUUUAAGGU	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN739_c0_g1_840_TPlot.pdf
TRINITY_DN739_c0_g1:875	si_a21	TRINITY_DN739_c0_g1	859	884	875	-24.30	-18.10	0.744855967078189	11	1-15,884-870;16-20,864-860	x-x,869-865[BULt];21-21,859-859[UP3]	.(((((.....(((((((((((((((&)))))))))))))))-----))))).	GUGGAAUGCUCCUGAAGAUGGAUGGG&CCUAUUUAUUUUUAG-----UUCUAA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN739_c0_g1_875_TPlot.pdf
TRINITY_DN739_c0_g1:876	si_a20	TRINITY_DN739_c0_g1	860	885	876	-26.70	-17.90	0.670411985018727	11	2-16,884-870;17-21,864-860	1-1,885-885[UP5];x-x,869-865[BULt]	(((((.....(((((((((((((((.&.)))))))))))))))-----)))))	UGGAAUGCUCCUGAAGAUGGAUGGGG&GCCUAUUUAUUUUUAG-----UUCUA	3	0.999997333137613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN739_c0_g1_876_TPlot.pdf
TRINITY_DN739_c0_g1:878	si_a18	TRINITY_DN739_c0_g1	867	887	878	-26.30	-17.50	0.665399239543726	10	2-2,886-886;4-18,884-870	1-1,887-887[UP5];3-3,885-885[SIL];19-21,869-867[UP3]	...(((((((((((((((.(.&.).)))))))))))))))...	CUCCUGAAGAUGGAUGGGGUG&AAGCCUAUUUAUUUUUAGUUC	3	0.999992511716794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN739_c0_g1_878_TPlot.pdf
TRINITY_DN739_c0_g1:879	si_a17	TRINITY_DN739_c0_g1	868	888	879	-24.30	-17.50	0.720164609053498	11	3-3,886-886;5-19,884-870	1-2,888-887[UP5];4-4,885-885[SIL];20-21,869-868[UP3]	..(((((((((((((((.(..&..).)))))))))))))))..	UCCUGAAGAUGGAUGGGGUGA&AAAGCCUAUUUAUUUUUAGUU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN739_c0_g1_879_TPlot.pdf
TRINITY_DN739_c0_g1:969	si_a319	TRINITY_DN739_c0_g1	957	978	969	-22.40	-15.30	0.683035714285714	10.5	1-10,978-969;11-11,967-967;14-21,964-957	x-x,968-968[BULt];12-13,966-965[SIL]	((((((((..(.((((((((((&))))))))))-)..))))))))	GGUGGAGAUUUACGUGGAUGGA&UUUAUCCAUG-AUUUUUUUAUU	4	0.999999999974148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN739_c0_g1_969_TPlot.pdf
TRINITY_DN739_c0_g1:970	si_a318	TRINITY_DN739_c0_g1	958	979	970	-22.50	-15.00	0.666666666666667	10	2-11,978-969;12-12,967-967;15-21,964-958	1-1,979-979[UP5];x-x,968-968[BULt];13-14,966-965[SIL]	(((((((..(.((((((((((.&.))))))))))-)..)))))))	GUGGAGAUUUACGUGGAUGGAA&AUUUAUCCAUG-AUUUUUUUAU	3	0.999999999999422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN739_c0_g1_970_TPlot.pdf
TRINITY_DN7400_c0_g1:795	si_s79	TRINITY_DN7400_c0_g1	784	804	795	-26.20	-17.40	0.66412213740458	7	2-15,803-790;17-19,788-786	1-1,804-804[UP5];16-16,789-789[SIL];20-21,785-784[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	UUGAAAAAAGGAAAGGAGGAC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7400_c0_g1_795_TPlot.pdf
TRINITY_DN7401_c0_g1:606	si_s40	TRINITY_DN7401_c0_g1	595	616	606	-24.30	-16.60	0.683127572016461	6.5	1-4,616-613;5-13,611-603;15-21,601-595	x-x,612-612[BULt];14-14,602-602[SIL]	(((((((.(((((((((.((((&))))-))))))))).)))))))	GGGAUCCUGUUAUUGAAUGGUU&AAUC-UUUAAUAAUUGGAUUUC	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN7401_c0_g1_606_TPlot.pdf
TRINITY_DN7405_c0_g3:1305	si_s68	TRINITY_DN7405_c0_g3	1294	1314	1305	-23.10	-16.40	0.70995670995671	7.5	1-15,1314-1300	16-21,1299-1294[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUUUAGAAAAUAGAGGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999996654681886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7405_c0_g3_1305_TPlot.pdf
TRINITY_DN7405_c0_g3:5541	si_s348	TRINITY_DN7405_c0_g3	5530	5550	5541	-33.10	-22.50	0.6797583081571	6.5	2-8,5549-5543;10-20,5541-5531	1-1,5550-5550[UP5];9-9,5542-5542[SIL];21-21,5530-5530[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UUCUGUUUCUUUUUCUUCCUU&CGGGGAGAUAAAGAAAUAGAU	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s348_TRINITY_DN7405_c0_g3_5541_TPlot.pdf
TRINITY_DN7405_c0_g3:6912	si_a887	TRINITY_DN7405_c0_g3	6901	6921	6912	-22.90	-15.40	0.672489082969432	10	4-18,6918-6904	1-3,6921-6919[UP5];19-21,6903-6901[UP3]	...(((((((((((((((...&...)))))))))))))))...	AACUUGUUGCUAUAUUGGCUA&CAAUCAAUAUAGUAAUAAUAA	2	0.758010505987663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN7405_c0_g3_6912_TPlot.pdf
TRINITY_DN7408_c0_g1:1464	si_a853	TRINITY_DN7408_c0_g1	1453	1473	1464	-26.30	-17.60	0.669201520912548	10.5	1-9,1473-1465;12-18,1462-1456	10-11,1464-1463[SIL];19-21,1455-1453[UP3]	...(((((((..(((((((((&)))))))))..)))))))...	GAAGAUUGGGCAUCAGGUUGG&CUAACUUGAAAUCCAAUUAUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a853_TRINITY_DN7408_c0_g1_1464_TPlot.pdf
TRINITY_DN7408_c0_g1:1694	si_s73	TRINITY_DN7408_c0_g1	1683	1705	1694	-24.00	-16.90	0.704166666666667	13.5	1-5,1705-1701;6-18,1698-1686	x-x,1700-1699[BULt];19-21,1685-1683[UP3]	...(((((((((((((..(((((&)))))--)))))))))))))...	GGCGGAGAGGGAAGAGGCGUGGA&UCUAU--UUUUUUUCUUUCCUUU	2	0.999999999998472	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7408_c0_g1_1694_TPlot.pdf
TRINITY_DN7408_c0_g1:1697	si_s75	TRINITY_DN7408_c0_g1	1686	1714	1697	-24.00	-17.60	0.733333333333333	21	1-8,1714-1707;9-21,1698-1686	x-x,1706-1699[BULt]	(((((((((((((........((((((((&))))))))--------)))))))))))))	GGAGAGGGAAGAGGCGUGGAUGAAGAAUG&UAUUUUUU--------UUCUUUCCUUUCU	2	0.999999996526916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7408_c0_g1_1697_TPlot.pdf
TRINITY_DN7408_c0_g1:2378	si_a65	TRINITY_DN7408_c0_g1	2367	2386	2378	-27.70	-19.90	0.71841155234657	5.5	1-9,2386-2378;11-13,2377-2375;15-21,2373-2367	10-10,x-x[BULq];14-14,2374-2374[SIL]	(((((((.(((-(((((((((&))))))))).))).)))))))	AGAGCAGAUUG-AAGAGGCGA&UCGCUUCUUUCAAAUUGUUUU	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN7408_c0_g1_2378_TPlot.pdf
TRINITY_DN7408_c0_g1:884	si_a80	TRINITY_DN7408_c0_g1	873	894	884	-22.10	-15.10	0.683257918552036	8.5	1-4,894-891;6-7,889-888;8-19,886-875	5-5,890-890[SIL];x-x,887-887[BULt];20-21,874-873[UP3]	..((((((((((((.((.((((&)))).))-))))))))))))..	ACUUCUUGAUGAUGCAACGACA&UGUUUUU-CAUUAUUAAGAAAA	3	0.999960616924559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN7408_c0_g1_884_TPlot.pdf
TRINITY_DN7408_c0_g1:885	si_a79	TRINITY_DN7408_c0_g1	874	895	885	-22.20	-16.00	0.720720720720721	7.5	1-5,895-891;7-8,889-888;9-20,886-875	6-6,890-890[SIL];x-x,887-887[BULt];21-21,874-874[UP3]	.((((((((((((.((.(((((&))))).))-)))))))))))).	CUUCUUGAUGAUGCAACGACAA&UUGUUUUU-CAUUAUUAAGAAA	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN7408_c0_g1_885_TPlot.pdf
TRINITY_DN7408_c0_g1:888	si_a77	TRINITY_DN7408_c0_g1	876	897	888	-22.20	-14.80	0.666666666666667	9	3-7,895-891;9-10,889-888;11-21,886-876	1-2,897-896[UP5];8-8,890-890[SIL];x-x,887-887[BULt]	(((((((((((.((.(((((..&..))))).))-)))))))))))	UCUUGAUGAUGCAACGACAAGC&AAUUGUUUUU-CAUUAUUAAGA	4	0.999999935407785	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN7408_c0_g1_888_TPlot.pdf
TRINITY_DN7408_c0_g1:975	si_s809	TRINITY_DN7408_c0_g1	964	984	975	-28.50	-20.60	0.72280701754386	9.5	1-5,984-980;7-18,978-967	6-6,979-979[SIL];19-21,966-964[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CACAGGAGGAGGUGGAGGAGA&UCUUCGUUACCUUUUCUUAAU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN7408_c0_g1_975_TPlot.pdf
TRINITY_DN740_c0_g1:1066	si_s71	TRINITY_DN740_c0_g1	1055	1082	1066	-25.70	-16.80	0.653696498054475	20.5	1-9,1082-1074;10-16,1066-1060;18-21,1058-1055	x-x,1073-1067[BULt];17-17,1059-1059[SIL]	((((.(((((((.......(((((((((&)))))))))-------))))))).))))	GGGAUAGAAGAGUAUCCACGAGUAGGAG&CUUCUAUUU-------UUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN740_c0_g1_1066_TPlot.pdf
TRINITY_DN740_c0_g1:1154	si_s268	TRINITY_DN740_c0_g1	1143	1165	1154	-26.10	-17.20	0.659003831417624	9	2-8,1164-1158;9-17,1155-1147	1-1,1165-1165[UP5];x-x,1157-1156[BULt];18-21,1146-1143[UP3]	....(((((((((..(((((((.&.)))))))--)))))))))....	CGAUUGUCGAUUUCGUUUUGAGC&ACUCAAAA--AAAUCGACAUAAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s268_TRINITY_DN740_c0_g1_1154_TPlot.pdf
TRINITY_DN740_c0_g1:1160	si_s264	TRINITY_DN740_c0_g1	1147	1169	1160	-26.30	-17.10	0.650190114068441	13	6-12,1164-1158;13-21,1155-1147	1-5,1169-1165[UP5];x-x,1157-1156[BULt]	(((((((((..(((((((.....&.....)))))))--)))))))))	UGUCGAUUUCGUUUUGAGCGUGG&UAUUACUCAAAA--AAAUCGACA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s264_TRINITY_DN740_c0_g1_1160_TPlot.pdf
TRINITY_DN740_c0_g1:1216	si_s861	TRINITY_DN740_c0_g1	1206	1225	1216	-40.10	-26.10	0.650872817955112	8.5	1-5,1225-1221;7-11,1219-1215;13-17,1214-1210	6-6,1220-1220[SIL];12-12,x-x[BULq];18-21,1209-1206[UP3]	....(((((-(((((.(((((&))))).))))).)))))....	ACGUGCCGG-AGGUCGAGGAG&CUCCUAGACCUACCGGUCUUA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s861_TRINITY_DN740_c0_g1_1216_TPlot.pdf
TRINITY_DN740_c0_g1:1220	si_s857	TRINITY_DN740_c0_g1	1210	1229	1220	-42.30	-28.00	0.66193853427896	8	1-2,1229-1228;5-9,1225-1221;11-15,1219-1215;17-21,1214-1210	3-4,1227-1226[SIL];10-10,1220-1220[SIL];16-16,x-x[BULq]	(((((-(((((.(((((..((&))..))))).))))).)))))	GCCGG-AGGUCGAGGAGGAGG&UCGACUCCUAGACCUACCGGU	0	0.0188317124608075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s857_TRINITY_DN740_c0_g1_1220_TPlot.pdf
TRINITY_DN740_c0_g1:1221	si_s856	TRINITY_DN740_c0_g1	1211	1230	1221	-43.30	-29.80	0.688221709006928	8	1-3,1230-1228;6-10,1225-1221;12-16,1219-1215;18-21,1214-1211	4-5,1227-1226[SIL];11-11,1220-1220[SIL];17-17,x-x[BULq]	((((-(((((.(((((..(((&)))..))))).))))).))))	CCGG-AGGUCGAGGAGGAGGC&GUCGACUCCUAGACCUACCGG	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s856_TRINITY_DN740_c0_g1_1221_TPlot.pdf
TRINITY_DN740_c0_g1:1223	si_s897	TRINITY_DN740_c0_g1	1212	1232	1223	-31.30	-24.20	0.773162939297125	8	2-13,1231-1220;15-19,1218-1214	1-1,1232-1232[UP5];14-14,1219-1219[SIL];20-21,1213-1212[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	CGGAGGUCGAGGAGGAGGCCG&AGGCUUUCUCUUCAAUUUCAA	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN740_c0_g1_1223_TPlot.pdf
TRINITY_DN740_c0_g1:1224	si_s896	TRINITY_DN740_c0_g1	1213	1233	1224	-31.60	-24.20	0.765822784810127	9	3-14,1231-1220;16-20,1218-1214	1-2,1233-1232[UP5];15-15,1219-1219[SIL];21-21,1213-1213[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	GGAGGUCGAGGAGGAGGCCGG&UAGGCUUUCUCUUCAAUUUCA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN740_c0_g1_1224_TPlot.pdf
TRINITY_DN740_c0_g1:1226	si_s894	TRINITY_DN740_c0_g1	1215	1235	1226	-29.10	-20.60	0.707903780068729	11.5	5-16,1231-1220;18-21,1218-1215	1-4,1235-1232[UP5];17-17,1219-1219[SIL]	((((.((((((((((((....&....)))))))))))).))))	AGGUCGAGGAGGAGGCCGGGG&AAUAGGCUUUCUCUUCAAUUU	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN740_c0_g1_1226_TPlot.pdf
TRINITY_DN740_c0_g1:1227	si_s893	TRINITY_DN740_c0_g1	1216	1236	1227	-29.10	-20.60	0.707903780068729	15.5	6-17,1231-1220	1-5,1236-1232[UP5];18-21,1219-1216[UP3]	....((((((((((((.....&.....))))))))))))....	GGUCGAGGAGGAGGCCGGGGA&AAAUAGGCUUUCUCUUCAAUU	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN740_c0_g1_1227_TPlot.pdf
TRINITY_DN740_c0_g1:1228	si_a745	TRINITY_DN740_c0_g1	1219	1235	1228	-42.00	-27.38	0.651904761904762	11.5	1-8,1235-1228;14-20,1226-1220	9-13,1227-1227[AILq];21-21,1219-1219[UP3]	.(((((((.----((((((((&)))))))).....))))))).	CGAGGAGGA----GGCCGGGG&CCCUGGCCAUGAACCUCCUUU	4	0.969455134493643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a745_TRINITY_DN740_c0_g1_1228_TPlot.pdf
TRINITY_DN740_c0_g1:1229	si_s891	TRINITY_DN740_c0_g1	1218	1238	1229	-29.60	-20.60	0.695945945945946	17	8-19,1231-1220	1-7,1238-1232[UP5];20-21,1219-1218[UP3]	..((((((((((((.......&.......))))))))))))..	UCGAGGAGGAGGCCGGGGAGC&AUAAAUAGGCUUUCUCUUCAA	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN740_c0_g1_1229_TPlot.pdf
TRINITY_DN740_c0_g1:156	si_a403	TRINITY_DN740_c0_g1	145	165	156	-22.00	-16.20	0.736363636363636	11	4-19,162-147	1-3,165-163[UP5];20-21,146-145[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUGUGUGAGCGAAACGAUGAG&AGAAUUGUUUUGUUUAUAUUU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN740_c0_g1_156_TPlot.pdf
TRINITY_DN740_c0_g1:2156	si_a721	TRINITY_DN740_c0_g1	2145	2164	2156	-35.10	-23.40	0.666666666666667	10.5	4-7,2161-2158;9-18,2157-2148	1-3,2164-2162[UP5];8-8,x-x[BULq];19-21,2147-2145[UP3]	...((((((((((-((((...&...)))).))))))))))...	UUCGUGCCCGAGU-ACGAGGA&UAAUCGUUACUCGGGCAUCUU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN740_c0_g1_2156_TPlot.pdf
TRINITY_DN7410_c0_g1:1668	si_a763	TRINITY_DN7410_c0_g1	1657	1676	1668	-28.80	-21.10	0.732638888888889	10	3-7,1674-1670;10-20,1668-1658	1-2,1676-1675[UP5];8-9,1669-1669[AILq];21-21,1657-1657[UP3]	.(((((((((((.-(((((..&..)))))..))))))))))).	CGGAUCAGUCAGU-ACCCAUG&UUUGGGUUUUUGAUUGAUUCA	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN7410_c0_g1_1668_TPlot.pdf
TRINITY_DN7411_c0_g1:3170	si_a721	TRINITY_DN7411_c0_g1	3159	3179	3170	-35.10	-26.20	0.746438746438746	9.5	4-7,3176-3173;9-21,3171-3159	1-3,3179-3177[UP5];8-8,3172-3172[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AAGAUGCCUGGGUUGCGACGG&UAAUCGUUACUCGGGCAUCUU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN7411_c0_g1_3170_TPlot.pdf
TRINITY_DN7411_c0_g1:743	si_a671	TRINITY_DN7411_c0_g1	729	752	743	-32.10	-21.20	0.660436137071651	8.5	2-15,751-738;16-17,735-734;18-20,732-730	1-1,752-752[UP5];x-x,737-736[BULt];x-x,733-733[BULt];21-21,729-729[UP3]	.(((.((..((((((((((((((.&.))))))))))))))--))-))).	GGCGAUGUUGAUGAGGAGUCGAUC&UAUUGAUUCCUUAUU--CA-CGCG	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a671_TRINITY_DN7411_c0_g1_743_TPlot.pdf
TRINITY_DN7414_c0_g1:2184	si_a786	TRINITY_DN7414_c0_g1	2172	2193	2184	-26.60	-18.00	0.676691729323308	8	1-11,2193-2183;13-13,2181-2181;16-21,2177-2172	12-12,2182-2182[SIL];14-15,2180-2178[AILt]	((((((...(.(((((((((((&))))))))))).)-..))))))	GGAAAAGCUGUGAGGUAGAAGA&UCUUCUAUUUUUC-UAUUUUCC	4	0.999999999987955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7414_c0_g1_2184_TPlot.pdf
TRINITY_DN7415_c0_g1:236	si_s79	TRINITY_DN7415_c0_g1	225	245	236	-26.20	-21.20	0.809160305343511	3.5	1-11,245-235;13-21,233-225	12-12,234-234[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AAGAAGAGAAGAAAGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	4	0.999957816069636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7415_c0_g1_236_TPlot.pdf
TRINITY_DN7415_c0_g1:237	si_s78	TRINITY_DN7415_c0_g1	226	246	237	-26.20	-21.20	0.809160305343511	2.5	1-12,246-235;14-21,233-226	13-13,234-234[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGAAGAGAAGAAAGAAAAGAA&UUUUUUUCUUUCCUUUCUUCU	3	0.999909682208268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7415_c0_g1_237_TPlot.pdf
TRINITY_DN7415_c0_g1:239	si_s81	TRINITY_DN7415_c0_g1	228	248	239	-28.90	-19.40	0.671280276816609	5.5	1-8,248-241;10-19,239-230	9-9,240-240[SIL];20-21,229-228[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	AAGAGAAGAAAGAAAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7415_c0_g1_239_TPlot.pdf
TRINITY_DN7415_c0_g1:240	si_s80	TRINITY_DN7415_c0_g1	229	249	240	-28.20	-20.30	0.719858156028369	4.5	1-9,249-241;11-20,239-230	10-10,240-240[SIL];21-21,229-229[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AGAGAAGAAAGAAAAGAAGAA&UUUUUCUUUCCUUUCUUCUUC	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7415_c0_g1_240_TPlot.pdf
TRINITY_DN7415_c0_g1:550	si_s79	TRINITY_DN7415_c0_g1	538	559	550	-26.20	-17.60	0.67175572519084	13.5	6-16,554-544;17-19,542-540	1-5,559-555[UP5];x-x,543-543[BULt];20-21,539-538[UP3]	..(((.(((((((((((.....&.....)))))))))))-)))..	UCGAAUGAGAGGAGAGACAACU&UUUUUUCUUUCCUUUC-UUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7415_c0_g1_550_TPlot.pdf
TRINITY_DN7415_c0_g1:554	si_s75	TRINITY_DN7415_c0_g1	543	563	554	-24.00	-15.80	0.658333333333333	19	10-20,554-544	1-9,563-555[UP5];21-21,543-543[UP3]	.(((((((((((.........&.........))))))))))).	UGAGAGGAGAGACAACUCUGU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7415_c0_g1_554_TPlot.pdf
TRINITY_DN7415_c0_g1:633	si_s75	TRINITY_DN7415_c0_g1	622	642	633	-24.00	-17.70	0.7375	8.5	3-19,640-624	1-2,642-641[UP5];20-21,623-622[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GUGGAGGGAGGAGAAAAAAAC&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999999961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7415_c0_g1_633_TPlot.pdf
TRINITY_DN7415_c0_g1:636	si_a497	TRINITY_DN7415_c0_g1	625	649	636	-32.00	-22.30	0.696875	12.5	1-7,649-643;8-12,638-634;14-21,632-625	x-x,642-639[BULt];13-13,633-633[SIL]	((((((((.(((((....(((((((&)))))))----))))).))))))))	GAGGGAGGAGAAAAAAACGCGGCAU&AUGUCGU----UUUUCGUCUUCCUU	4	0.999999991278554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7415_c0_g1_636_TPlot.pdf
TRINITY_DN7418_c0_g2:533	si_s100	TRINITY_DN7418_c0_g2	522	542	533	-33.70	-25.10	0.744807121661721	9	1-15,542-528	16-21,527-522[UP3]	......(((((((((((((((&)))))))))))))))......	CUCCAUCAAUCCGAGGCGGGG&CUUCGCUUCGGAUUGGAAAAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN7418_c0_g2_533_TPlot.pdf
TRINITY_DN741_c0_g1:1254	si_s79	TRINITY_DN741_c0_g1	1243	1262	1254	-26.20	-19.20	0.732824427480916	8.5	3-9,1260-1254;11-21,1253-1243	1-2,1262-1261[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	AGGGAGAAGGG-AAGAAGGCC&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN741_c0_g1_1254_TPlot.pdf
TRINITY_DN741_c0_g1:4484	si_a893	TRINITY_DN741_c0_g1	4473	4493	4484	-21.70	-15.20	0.700460829493088	5.5	2-12,4492-4482;14-20,4480-4474	1-1,4493-4493[UP5];13-13,4481-4481[SIL];21-21,4473-4473[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	AGUUACUUUUUAUUAUUGUAA&AUAUAGUAAUAAUAAGUAAUA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a893_TRINITY_DN741_c0_g1_4484_TPlot.pdf
TRINITY_DN7420_c0_g1:884	si_a66	TRINITY_DN7420_c0_g1	873	893	884	-26.70	-17.40	0.651685393258427	6	2-12,892-882;14-18,880-876	1-1,893-893[UP5];13-13,881-881[SIL];19-21,875-873[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	UUUAAUAGAUUGAAAGAAGCU&CGCUUCUUUCAAAUUGUUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN7420_c0_g1_884_TPlot.pdf
TRINITY_DN7424_c0_g1:282	si_s880	TRINITY_DN7424_c0_g1	271	302	282	-26.70	-17.50	0.655430711610487	23.5	1-8,302-295;9-21,283-271	x-x,294-284[BULt]	(((((((((((((...........((((((((&))))))))-----------)))))))))))))	GUCUGUUUGUUUUCUGUAUGCAGAUAGUUCUA&UAGAACUA-----------AAAAUAAAUAGGC	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s880_TRINITY_DN7424_c0_g1_282_TPlot.pdf
TRINITY_DN7424_c0_g1:757	si_a72	TRINITY_DN7424_c0_g1	746	765	757	-21.90	-14.50	0.662100456621005	7.5	2-8,764-758;10-19,757-748	1-1,765-765[UP5];9-9,x-x[BULq];20-21,747-746[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	ACAGUGGAGAAC-AUUUGAGU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN7424_c0_g1_757_TPlot.pdf
TRINITY_DN7428_c1_g1:1582	si_s434	TRINITY_DN7428_c1_g1	1571	1591	1582	-21.50	-14.10	0.655813953488372	7	1-8,1591-1584;10-17,1582-1575	9-9,1583-1583[SIL];18-21,1574-1571[UP3]	....((((((((.((((((((&)))))))).))))))))....	UUUCUAAUAUGUUAUUGUUGU&ACAAUAAUUACAUAUUAUAUA	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN7428_c1_g1_1582_TPlot.pdf
TRINITY_DN7428_c1_g1:1584	si_s432	TRINITY_DN7428_c1_g1	1573	1593	1584	-21.30	-15.00	0.704225352112676	6	2-10,1592-1584;12-19,1582-1575	1-1,1593-1593[UP5];11-11,1583-1583[SIL];20-21,1574-1573[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UCUAAUAUGUUAUUGUUGUUU&UAACAAUAAUUACAUAUUAUA	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN7428_c1_g1_1584_TPlot.pdf
TRINITY_DN7428_c1_g1:1586	si_s430	TRINITY_DN7428_c1_g1	1575	1595	1586	-21.30	-14.90	0.699530516431925	7	4-12,1592-1584;14-21,1582-1575	1-3,1595-1593[UP5];13-13,1583-1583[SIL]	((((((((.(((((((((...&...))))))))).))))))))	UAAUAUGUUAUUGUUGUUUAA&UAUAACAAUAAUUACAUAUUA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN7428_c1_g1_1586_TPlot.pdf
TRINITY_DN742_c0_g1:1588	si_a757	TRINITY_DN742_c0_g1	1577	1600	1588	-33.10	-21.60	0.652567975830816	10.5	2-4,1599-1597;5-13,1593-1585;16-21,1582-1577	1-1,1600-1600[UP5];x-x,1596-1594[BULt];14-15,1584-1583[SIL]	((((((..(((((((((...(((.&.)))---)))))))))..))))))	AAUCGACCACCCAGAGGCAGAGGA&ACCU---CCUUUGGGUUUUUGAUU	3	0.999999999979205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN742_c0_g1_1588_TPlot.pdf
TRINITY_DN742_c0_g1:1606	si_s887	TRINITY_DN742_c0_g1	1595	1615	1606	-26.80	-18.00	0.671641791044776	15.5	8-21,1608-1595	1-7,1615-1609[UP5]	((((((((((((((.......&.......))))))))))))))	AGAGGAAGCUUGUUCAGAGGG&AAAAAUAAAUAGGCUUUCUCU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN742_c0_g1_1606_TPlot.pdf
TRINITY_DN7430_c0_g1:2125	si_a735	TRINITY_DN7430_c0_g1	2109	2135	2125	-41.70	-27.90	0.669064748201439	18	1-2,2135-2134;4-12,2131-2123;13-21,2117-2109	3-3,2133-2132[AILt];x-x,2122-2118[BULt]	(((((((((.....(((((((((..((&))-.)))))))))-----)))))))))	CAUGGCCAGUAAAUGGGUGGGGGACGC&GC-AUCUUUACCC-----CUGGCCAUG	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN7430_c0_g1_2125_TPlot.pdf
TRINITY_DN7430_c0_g1:3095	si_a463	TRINITY_DN7430_c0_g1	3084	3104	3095	-19.70	-13.00	0.65989847715736	6.5	1-4,3104-3101;6-19,3099-3086	5-5,3100-3100[SIL];20-21,3085-3084[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AGAAUUAUAUAUUGUACGUAA&UUAUAUAUAAUAUGUAAUUAU	2	0.996856966647636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN7430_c0_g1_3095_TPlot.pdf
TRINITY_DN7430_c0_g1:3097	si_a461	TRINITY_DN7430_c0_g1	3086	3106	3097	-21.50	-15.20	0.706976744186047	5.5	1-6,3106-3101;8-21,3099-3086	7-7,3100-3100[SIL]	((((((((((((((.((((((&)))))).))))))))))))))	AAUUAUAUAUUGUACGUAAUA&UGUUAUAUAUAAUAUGUAAUU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN7430_c0_g1_3097_TPlot.pdf
TRINITY_DN7430_c0_g1:3098	si_a460	TRINITY_DN7430_c0_g1	3087	3107	3098	-21.60	-15.20	0.703703703703704	5.5	1-7,3107-3101;9-21,3099-3087	8-8,3100-3100[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	AUUAUAUAUUGUACGUAAUAA&UUGUUAUAUAUAAUAUGUAAU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN7430_c0_g1_3098_TPlot.pdf
TRINITY_DN7430_c0_g1:422	si_a497	TRINITY_DN7430_c0_g1	412	431	422	-32.00	-23.60	0.7375	9	3-10,429-422;12-19,421-414	1-2,431-430[UP5];11-11,x-x[BULq];20-21,413-412[UP3]	..((((((((-((((((((..&..)))))))).))))))))..	CUGGGGGACG-AAGACGACGA&AUGUCGUUUUUCGUCUUCCUU	3	0.998366946912216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7430_c0_g1_422_TPlot.pdf
TRINITY_DN7430_c0_g1:558	si_s207	TRINITY_DN7430_c0_g1	547	569	558	-33.00	-21.80	0.660606060606061	10	1-7,569-563;9-19,559-549	8-8,562-560[AILt];20-21,548-547[UP3]	..(((((((((((...(((((((&)))))))--.)))))))))))..	GAUCGAAUGCGACACAGGUACAU&AUGUACC--AGUUGUGUUCGAAA	4	0.999067011191199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN7430_c0_g1_558_TPlot.pdf
TRINITY_DN7431_c0_g1:1115	si_a862	TRINITY_DN7431_c0_g1	1104	1124	1115	-22.70	-15.90	0.700440528634361	8.5	3-11,1122-1114;13-19,1112-1106	1-2,1124-1123[UP5];12-12,1113-1113[SIL];20-21,1105-1104[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	UCAGUCUUUCAUGAUUGGAGU&AAUCCAAUUAUUAAAGAUUUA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN7431_c0_g1_1115_TPlot.pdf
TRINITY_DN7432_c0_g1:2517	si_s432	TRINITY_DN7432_c0_g1	2506	2525	2517	-21.30	-14.30	0.671361502347418	6	2-8,2524-2518;10-19,2517-2508	1-1,2525-2525[UP5];9-9,x-x[BULq];20-21,2507-2506[UP3]	..((((((((((-(((((((.&.))))))).))))))))))..	AUUAAUAUGUGA-UAUUGUUU&UAACAAUAAUUACAUAUUAUA	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN7432_c0_g1_2517_TPlot.pdf
TRINITY_DN7432_c0_g1:2518	si_s430	TRINITY_DN7432_c0_g1	2508	2528	2518	-21.30	-14.40	0.676056338028169	4.5	1-5,2528-2524;6-10,2522-2518;12-21,2517-2508	x-x,2523-2523[BULt];11-11,x-x[BULq]	((((((((((-(((((.(((((&)))))-))))).))))))))))	UAAUAUGUGA-UAUUGUUUAUA&UAUAA-CAAUAAUUACAUAUUA	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN7432_c0_g1_2518_TPlot.pdf
TRINITY_DN7435_c0_g1:117	si_s80	TRINITY_DN7435_c0_g1	106	126	117	-28.20	-19.30	0.684397163120567	9.5	4-10,123-117;12-21,115-106	1-3,126-124[UP5];11-11,116-116[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GAAGAGGAAGAGGAAGAAUUG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7435_c0_g1_117_TPlot.pdf
TRINITY_DN7437_c0_g1:1170	si_a793	TRINITY_DN7437_c0_g1	1159	1181	1170	-28.50	-20.00	0.701754385964912	11	2-9,1180-1173;10-19,1170-1161	1-1,1181-1181[UP5];x-x,1172-1171[BULt];20-21,1160-1159[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	UGGGAUUGGAAGUUGUAGGGAAU&UUUUUCUAU--UUUCCAAUCCGA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7437_c0_g1_1170_TPlot.pdf
TRINITY_DN7437_c0_g1:1464	si_s83	TRINITY_DN7437_c0_g1	1453	1473	1464	-30.90	-20.70	0.669902912621359	6	1-4,1473-1470;6-17,1468-1457	5-5,1469-1469[SIL];18-21,1456-1453[UP3]	....((((((((((((.((((&)))).))))))))))))....	UGCAAAGAAGAAAGGAUAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7437_c0_g1_1464_TPlot.pdf
TRINITY_DN7437_c0_g1:1468	si_s79	TRINITY_DN7437_c0_g1	1457	1477	1468	-26.20	-23.50	0.896946564885496	4.5	1-8,1477-1470;10-21,1468-1457	9-9,1469-1469[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AAGAAGAAAGGAUAGAAGAGG&UUUUUUCUUUCCUUUCUUCUU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7437_c0_g1_1468_TPlot.pdf
TRINITY_DN7437_c0_g1:152	si_a627	TRINITY_DN7437_c0_g1	141	163	152	-29.50	-19.40	0.657627118644068	11	1-3,163-161;4-16,158-146	x-x,160-159[BULt];17-21,145-141[UP3]	.....(((((((((((((..(((&)))--))))))))))))).....	GCUUUAUCGGCAUAAUAUCUGCC&GGC--GUAUUAUGUCGAUUUUUU	3	0.999999239832701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN7437_c0_g1_152_TPlot.pdf
TRINITY_DN7437_c0_g1:2004	si_s188	TRINITY_DN7437_c0_g1	1996	2013	2004	-28.20	-19.00	0.673758865248227	6.5	1-13,2013-2001;17-20,2000-1997	14-16,x-x[BULq];21-21,1996-1996[UP3]	.((((---(((((((((((((&)))))))))))))...)))).	CUUCC---GUAAUUGUUGCUC&GAGUAACGAUUAUUUUGGAAU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN7437_c0_g1_2004_TPlot.pdf
TRINITY_DN7437_c0_g2:1038	si_s79	TRINITY_DN7437_c0_g2	1027	1047	1038	-26.20	-17.20	0.656488549618321	9.5	4-9,1044-1039;12-21,1036-1027	1-3,1047-1045[UP5];10-11,1038-1037[SIL]	((((((((((..((((((...&...))))))..))))))))))	AAGAAGAGAGAUAAGAAAUAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7437_c0_g2_1038_TPlot.pdf
TRINITY_DN7437_c0_g2:1045	si_a547	TRINITY_DN7437_c0_g2	1035	1057	1045	-26.90	-18.20	0.676579925650558	8	1-7,1057-1051;8-16,1047-1039;18-21,1038-1035	x-x,1050-1048[BULt];17-17,x-x[BULq]	((((-(((((((((...(((((((&)))))))---))))))))).))))	AGAU-AAGAAAUAGUGAAUUGAGC&GUUCAAU---CUAUUUCUUUAUCU	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN7437_c0_g2_1045_TPlot.pdf
TRINITY_DN7437_c0_g2:1066	si_s96	TRINITY_DN7437_c0_g2	1055	1079	1066	-37.20	-24.60	0.661290322580645	14	2-8,1078-1072;9-19,1067-1057	1-1,1079-1079[UP5];x-x,1071-1068[BULt];20-21,1056-1055[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	AGCGGUCCGGAGCUAUCGAGGAAGU&UCUUCUUC----GCUUCGGAUUGGA	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN7437_c0_g2_1066_TPlot.pdf
TRINITY_DN7437_c0_g2:1067	si_s95	TRINITY_DN7437_c0_g2	1056	1080	1067	-36.30	-24.60	0.677685950413223	14.5	3-9,1078-1072;10-20,1067-1057	1-2,1080-1079[UP5];x-x,1071-1068[BULt];21-21,1056-1056[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	GCGGUCCGGAGCUAUCGAGGAAGUA&UUCUUCUUC----GCUUCGGAUUGG	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN7437_c0_g2_1067_TPlot.pdf
TRINITY_DN7437_c0_g2:1069	si_s93	TRINITY_DN7437_c0_g2	1058	1079	1069	-34.80	-22.62	0.65	11.5	2-8,1078-1072;12-21,1067-1058	1-1,1079-1079[UP5];9-11,1071-1068[AILt]	((((((((((....(((((((.&.)))))))-...))))))))))	GGUCCGGAGCUAUCGAGGAAGU&UCUUCUUC-UUCGCUUCGGAUU	2	0.999999999267085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN7437_c0_g2_1069_TPlot.pdf
TRINITY_DN7437_c0_g2:1082	si_a546	TRINITY_DN7437_c0_g2	1069	1091	1082	-28.60	-19.60	0.685314685314685	11	1-12,1091-1080;13-18,1077-1072	x-x,1079-1078[BULt];19-21,1071-1069[UP3]	...((((((..((((((((((((&))))))))))))--))))))...	AUCGAGGAAGUAUGGGUUGAGCC&GGUUCAAUCUAU--UUCUUUAUC	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN7437_c0_g2_1082_TPlot.pdf
TRINITY_DN7437_c0_g2:1084	si_a544	TRINITY_DN7437_c0_g2	1071	1093	1084	-28.90	-20.00	0.69204152249135	10	3-14,1091-1080;15-20,1077-1072	1-2,1093-1092[UP5];x-x,1079-1078[BULt];21-21,1071-1071[UP3]	.((((((..((((((((((((..&..))))))))))))--)))))).	CGAGGAAGUAUGGGUUGAGCCUA&UCGGUUCAAUCUAU--UUCUUUA	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN7437_c0_g2_1084_TPlot.pdf
TRINITY_DN7437_c0_g2:1085	si_a543	TRINITY_DN7437_c0_g2	1072	1094	1085	-28.70	-19.80	0.689895470383275	10.5	4-15,1091-1080;16-21,1077-1072	1-3,1094-1092[UP5];x-x,1079-1078[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	GAGGAAGUAUGGGUUGAGCCUAG&AUCGGUUCAAUCUAU--UUCUUU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN7437_c0_g2_1085_TPlot.pdf
TRINITY_DN7437_c0_g2:1117	si_s88	TRINITY_DN7437_c0_g2	1105	1125	1117	-34.80	-22.70	0.652298850574713	5.5	1-8,1125-1118;10-16,1117-1111;17-20,1109-1106	9-9,x-x[BULq];x-x,1110-1110[BULt];21-21,1105-1105[UP3]	.((((.(((((((-((((((((&)))))))).)))))))-)))).	UAAGUGGAAGAAG-AGAGAGGA&UCCUUUCUUCUUCUUC-GCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7437_c0_g2_1117_TPlot.pdf
TRINITY_DN7437_c0_g2:1118	si_s87	TRINITY_DN7437_c0_g2	1106	1126	1118	-32.90	-22.90	0.696048632218845	5.5	2-9,1125-1118;11-17,1117-1111;18-21,1109-1106	1-1,1126-1126[UP5];10-10,x-x[BULq];x-x,1110-1110[BULt]	((((.(((((((-((((((((.&.)))))))).)))))))-))))	AAGUGGAAGAAG-AGAGAGGAU&UUCCUUUCUUCUUCUUC-GCUU	4	0.999999999998563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN7437_c0_g2_1118_TPlot.pdf
TRINITY_DN7437_c0_g2:1120	si_s84	TRINITY_DN7437_c0_g2	1110	1129	1120	-32.30	-21.40	0.662538699690402	10	5-12,1125-1118;14-20,1117-1111	1-4,1129-1126[UP5];13-13,x-x[BULq];21-21,1110-1110[UP3]	.(((((((-((((((((....&....)))))))).))))))).	GGAAGAAG-AGAGAGGAUAUC&UCUUUCCUUUCUUCUUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN7437_c0_g2_1120_TPlot.pdf
TRINITY_DN7437_c0_g2:1423	si_s79	TRINITY_DN7437_c0_g2	1412	1432	1423	-26.20	-18.30	0.698473282442748	9.5	4-16,1429-1417;19-21,1414-1412	1-3,1432-1430[UP5];17-18,1416-1415[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	AAGCUGGAAGGGAAGAGAUCA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7437_c0_g2_1423_TPlot.pdf
TRINITY_DN7437_c0_g2:1520	si_s610	TRINITY_DN7437_c0_g2	1510	1530	1520	-27.20	-17.90	0.658088235294118	8	1-9,1530-1522;10-17,1520-1513;19-20,1512-1511	x-x,1521-1521[BULt];18-18,x-x[BULq];21-21,1510-1510[UP3]	.((-((((((((.(((((((((&)))))))))-)))))))).)).	AGC-UGGAUUUGUAGAGAGGUU&AAUCUUUUU-UAAAUCCAAGCG	3	0.996749715279297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN7437_c0_g2_1520_TPlot.pdf
TRINITY_DN7437_c0_g2:51	si_a406	TRINITY_DN7437_c0_g2	40	60	51	-19.80	-13.30	0.671717171717172	11	1-14,60-47	15-21,46-40[UP3]	.......((((((((((((((&)))))))))))))).......	GAAAACGAUAGGCAAAGCGAU&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN7437_c0_g2_51_TPlot.pdf
TRINITY_DN7437_c0_g2:52	si_a405	TRINITY_DN7437_c0_g2	41	61	52	-19.80	-14.50	0.732323232323232	10	1-15,61-47	16-21,46-41[UP3]	......(((((((((((((((&)))))))))))))))......	AAAACGAUAGGCAAAGCGAUU&AAUUGUUUUGUUUAUAUUUAA	4	0.999999932685302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7437_c0_g2_52_TPlot.pdf
TRINITY_DN7437_c0_g2:53	si_a404	TRINITY_DN7437_c0_g2	42	62	53	-21.70	-14.90	0.686635944700461	9.5	2-16,61-47	1-1,62-62[UP5];17-21,46-42[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAACGAUAGGCAAAGCGAUUG&GAAUUGUUUUGUUUAUAUUUA	3	0.999999999786684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN7437_c0_g2_53_TPlot.pdf
TRINITY_DN7437_c0_g2:555	si_a70	TRINITY_DN7437_c0_g2	544	564	555	-23.90	-16.60	0.694560669456067	6.5	1-17,564-548	18-21,547-544[UP3]	....(((((((((((((((((&)))))))))))))))))....	AUUAAAAGAUAAUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN7437_c0_g2_555_TPlot.pdf
TRINITY_DN7438_c0_g1:1241	si_a549	TRINITY_DN7438_c0_g1	1230	1249	1241	-29.50	-20.90	0.708474576271186	7.5	1-2,1249-1248;5-7,1245-1243;9-21,1242-1230	3-4,1247-1246[SIL];8-8,x-x[BULq]	(((((((((((((-(((..((&))..))).)))))))))))))	GGAGAUGAAGAAG-AGAGCGA&UCAAUCUAUUUCUUUAUCUCC	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN7438_c0_g1_1241_TPlot.pdf
TRINITY_DN7438_c0_g1:463	si_a784	TRINITY_DN7438_c0_g1	452	472	463	-24.70	-17.90	0.724696356275304	7	3-8,470-465;10-21,463-452	1-2,472-471[UP5];9-9,464-464[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	AAAAUAGAAGAAGGGAAGAAG&ACUCUUCUAUUUUUCUAUUUU	4	0.999995269886044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7438_c0_g1_463_TPlot.pdf
TRINITY_DN7438_c0_g1:464	si_a783	TRINITY_DN7438_c0_g1	453	473	464	-24.70	-17.00	0.688259109311741	8.5	4-9,470-465;11-21,463-453	1-3,473-471[UP5];10-10,464-464[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AAAUAGAAGAAGGGAAGAAGA&AACUCUUCUAUUUUUCUAUUU	2	0.999999170064157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7438_c0_g1_464_TPlot.pdf
TRINITY_DN7438_c0_g1:465	si_s81	TRINITY_DN7438_c0_g1	450	473	465	-28.90	-19.90	0.688581314878893	8	1-7,473-467;9-18,466-457;19-21,452-450	8-8,x-x[BULq];x-x,456-453[BULt]	(((....((((((((((-(((((((&))))))).))))))))))----)))	AGAAAAUAGAAGAAGGG-AAGAAGA&UUUUCUUUCCUUUCUUCU----UCU	2	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7438_c0_g1_465_TPlot.pdf
TRINITY_DN7438_c0_g1:467	si_s78	TRINITY_DN7438_c0_g1	457	476	467	-26.20	-21.50	0.820610687022901	4.5	2-10,475-467;12-21,466-457	1-1,476-476[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	AGAAGAAGGG-AAGAAGAAAC&UUUUUUUCUUUCCUUUCUUCU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7438_c0_g1_467_TPlot.pdf
TRINITY_DN7438_c0_g1:471	si_s74	TRINITY_DN7438_c0_g1	460	480	471	-25.00	-16.70	0.668	12	6-20,475-461	1-5,480-476[UP5];21-21,460-460[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGAAGGGAAGAAGAAACCUGU&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7438_c0_g1_471_TPlot.pdf
TRINITY_DN7438_c0_g1:651	si_a784	TRINITY_DN7438_c0_g1	640	661	651	-24.70	-16.20	0.65587044534413	9	2-7,660-655;8-16,653-645	1-1,661-661[UP5];x-x,654-654[BULt];17-21,644-640[UP3]	.....(((((((((.((((((.&.))))))-))))))))).....	AAUUAAGAAAAGUAGGAAGAGA&ACUCUUC-UAUUUUUCUAUUUU	2	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7438_c0_g1_651_TPlot.pdf
TRINITY_DN7438_c1_g1:726	si_s79	TRINITY_DN7438_c1_g1	715	735	726	-26.20	-17.20	0.656488549618321	8	1-12,735-724;15-18,721-718	13-14,723-722[SIL];19-21,717-715[UP3]	...((((..((((((((((((&))))))))))))..))))...	GUAAAGAUUGGAAAGGAGGAA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7438_c1_g1_726_TPlot.pdf
TRINITY_DN7438_c1_g1:727	si_s78	TRINITY_DN7438_c1_g1	716	736	727	-26.20	-17.40	0.66412213740458	8	2-13,735-724;16-19,721-718	1-1,736-736[UP5];14-15,723-722[SIL];20-21,717-716[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	UAAAGAUUGGAAAGGAGGAAU&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7438_c1_g1_727_TPlot.pdf
TRINITY_DN7438_c1_g1:730	si_s75	TRINITY_DN7438_c1_g1	719	739	730	-24.00	-16.50	0.6875	12	5-16,735-724;19-21,721-719	1-4,739-736[UP5];17-18,723-722[SIL]	(((..((((((((((((....&....))))))))))))..)))	AGAUUGGAAAGGAGGAAUUUG&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7438_c1_g1_730_TPlot.pdf
TRINITY_DN7438_c1_g1:773	si_a665	TRINITY_DN7438_c1_g1	762	782	773	-29.60	-19.40	0.655405405405405	13	3-10,780-773;13-18,770-765	1-2,782-781[UP5];11-12,772-771[SIL];19-21,764-762[UP3]	...((((((..((((((((..&..))))))))..))))))...	GUGGAGGGACGGAUGGGCAGA&AAUGCCUAUUGAUUCCUUAUU	4	0.999995171230596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN7438_c1_g1_773_TPlot.pdf
TRINITY_DN7438_c1_g1:774	si_a664	TRINITY_DN7438_c1_g1	763	783	774	-29.60	-19.40	0.655405405405405	13	4-11,780-773;14-19,770-765	1-3,783-781[UP5];12-13,772-771[SIL];20-21,764-763[UP3]	..((((((..((((((((...&...))))))))..))))))..	UGGAGGGACGGAUGGGCAGAU&AAAUGCCUAUUGAUUCCUUAU	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN7438_c1_g1_774_TPlot.pdf
TRINITY_DN743_c1_g2:1151	si_s245	TRINITY_DN743_c1_g2	1140	1160	1151	-33.20	-24.80	0.746987951807229	9	1-2,1160-1159;5-17,1156-1144	3-4,1158-1157[SIL];18-21,1143-1140[UP3]	....(((((((((((((..((&))..)))))))))))))....	UCUUUCGGGAAGUGCCUUAUG&CAAUAGGCAUUUCCCGAUAUA	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN743_c1_g2_1151_TPlot.pdf
TRINITY_DN743_c1_g2:1266	si_s208	TRINITY_DN743_c1_g2	1255	1273	1266	-34.50	-23.70	0.68695652173913	7.5	1-7,1273-1267;10-19,1266-1257	8-9,x-x[BULq];20-21,1256-1255[UP3]	..((((((((((--(((((((&)))))))..))))))))))..	UCUUCGAGCACA--UGGUGCA&UGUACCAGUUGUGUUCGAAAC	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN743_c1_g2_1266_TPlot.pdf
TRINITY_DN743_c1_g2:2355	si_a70	TRINITY_DN743_c1_g2	2338	2364	2355	-23.90	-16.40	0.686192468619247	16	1-11,2364-2354;12-21,2347-2338	x-x,2353-2348[BULt]	((((((((((......(((((((((((&)))))))))))------))))))))))	GAUGAAGGACUGAUGAAAUUUGGAGGG&UCUUUCAAAUU------GUUUUUCAUU	4	0.999999846289191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN743_c1_g2_2355_TPlot.pdf
TRINITY_DN7447_c0_g1:14	si_s78	TRINITY_DN7447_c0_g1	3	23	14	-26.20	-22.90	0.874045801526718	3.5	1-19,23-5	20-21,4-3[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAAGGAAAGGAAAGAAAAGAA&UUUUUUUCUUUCCUUUCUUCU	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7447_c0_g1_14_TPlot.pdf
TRINITY_DN7447_c0_g1:15	si_s77	TRINITY_DN7447_c0_g1	4	24	15	-25.50	-23.80	0.933333333333333	2.5	1-20,24-5	21-21,4-4[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AAGGAAAGGAAAGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7447_c0_g1_15_TPlot.pdf
TRINITY_DN7447_c0_g1:16	si_s76	TRINITY_DN7447_c0_g1	5	25	16	-23.60	-23.80	1	2.5	2-21,24-5	1-1,25-25[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AGGAAAGGAAAGAAAAGAAAA&AUUUUUUUUCUUUCCUUUCUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7447_c0_g1_16_TPlot.pdf
TRINITY_DN7447_c0_g1:19	si_s73	TRINITY_DN7447_c0_g1	8	27	19	-24.00	-20.30	0.845833333333333	3	1-3,27-25;5-21,24-8	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	AAAGGAAAGAAAAGAAA-AGA&UCUAUUUUUUUUCUUUCCUUU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7447_c0_g1_19_TPlot.pdf
TRINITY_DN7447_c0_g1:20	si_s72	TRINITY_DN7447_c0_g1	9	28	20	-24.10	-20.30	0.842323651452282	3	1-4,28-25;6-21,24-9	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AAGGAAAGAAAAGAAA-AGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7447_c0_g1_20_TPlot.pdf
TRINITY_DN7447_c0_g1:21	si_s71	TRINITY_DN7447_c0_g1	10	29	21	-25.70	-19.60	0.762645914396887	4	2-5,28-25;7-21,24-10	1-1,29-29[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AGGAAAGAAAAGAAA-AGAAA&CUUCUAUUUUUUUUCUUUCCU	2	0.997941414062317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN7447_c0_g1_21_TPlot.pdf
TRINITY_DN7447_c0_g1:22	si_s70	TRINITY_DN7447_c0_g1	11	30	22	-25.80	-18.30	0.709302325581395	6	3-6,28-25;8-21,24-11	1-2,30-29[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAAAGAAAAGAAA-AGAAAA&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999804542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN7447_c0_g1_22_TPlot.pdf
TRINITY_DN7447_c0_g1:5014	si_a398	TRINITY_DN7447_c0_g1	5003	5024	5014	-22.40	-14.80	0.660714285714286	7.5	2-8,5023-5017;9-19,5015-5005	1-1,5024-5024[UP5];x-x,5016-5016[BULt];20-21,5004-5003[UP3]	..(((((((((((.(((((((.&.)))))))-)))))))))))..	CUGACAAAACAAUAUUUGUAUA&AAUAUAGA-AUUGUUUUGUUUA	2	0.999998668179535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN7447_c0_g1_5014_TPlot.pdf
TRINITY_DN7451_c0_g1:1829	si_a336	TRINITY_DN7451_c0_g1	1818	1838	1829	-31.20	-20.50	0.657051282051282	10	3-13,1836-1826;15-19,1824-1820	1-2,1838-1837[UP5];14-14,1825-1825[SIL];20-21,1819-1818[UP3]	..(((((.(((((((((((..&..))))))))))).)))))..	UCAUUUUGGGGAUGGGGAGGU&UAUUCCUUGUCCCGAAAAUAU	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN7451_c0_g1_1829_TPlot.pdf
TRINITY_DN7452_c0_g1:1683	si_a459	TRINITY_DN7452_c0_g1	1672	1692	1683	-23.20	-15.30	0.65948275862069	9	1-3,1692-1690;5-13,1688-1680;15-19,1678-1674	4-4,1689-1689[SIL];14-14,1679-1679[SIL];20-21,1673-1672[UP3]	..(((((.(((((((((.(((&))).))))))))).)))))..	GGACGUGGUGUAUAUAGGGAC&GUUGUUAUAUAUAAUAUGUAA	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN7452_c0_g1_1683_TPlot.pdf
TRINITY_DN7457_c0_g2:271	si_s65	TRINITY_DN7457_c0_g2	260	280	271	-26.00	-17.00	0.653846153846154	6	1-5,280-276;7-11,274-270;14-21,267-260	6-6,275-275[SIL];12-13,269-268[SIL]	((((((((..(((((.(((((&))))).)))))..))))))))	GAAAGAAACAAGAAGAUGCUG&UAGCAACUUCUAUUUUUUUUC	4	0.999999993731687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN7457_c0_g2_271_TPlot.pdf
TRINITY_DN7457_c0_g2:606	si_a405	TRINITY_DN7457_c0_g2	594	615	606	-19.80	-13.30	0.671717171717172	8	1-10,615-606;11-18,604-597	x-x,605-605[BULt];19-21,596-594[UP3]	...((((((((.((((((((((&))))))))))-))))))))...	UUUAAUAUAAAUCAGGGCAAUU&AAUUGUUUUG-UUUAUAUUUAA	2	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7457_c0_g2_606_TPlot.pdf
TRINITY_DN7459_c0_g2:69	si_s679	TRINITY_DN7459_c0_g2	58	81	69	-25.20	-17.30	0.686507936507937	11.5	1-8,81-74;9-17,70-62	x-x,73-71[BULt];18-21,61-58[UP3]	....(((((((((...((((((((&))))))))---)))))))))....	AAUUGACUCAUGUGGUUUCUGUAA&UUAUAGAA---ACAUGAGUUUAAU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN7459_c0_g2_69_TPlot.pdf
TRINITY_DN745_c0_g1:1122	si_a499	TRINITY_DN745_c0_g1	1108	1133	1122	-35.20	-23.20	0.659090909090909	13	1-8,1133-1126;9-11,1123-1121;12-21,1117-1108	x-x,1125-1124[BULt];x-x,1120-1118[BULt]	((((((((((...(((..((((((((&))))))))--)))---))))))))))	CCGGGGAGGAAACCGACAAAGACGAU&GUCGUUUU--UCG---UCUUCCUUGG	4	0.999999999996509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN745_c0_g1_1122_TPlot.pdf
TRINITY_DN7461_c0_g1:2830	si_s64	TRINITY_DN7461_c0_g1	2819	2839	2830	-24.10	-18.00	0.746887966804979	4	2-7,2838-2833;9-21,2831-2819	1-1,2839-2839[UP5];8-8,2832-2832[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	AAAAAAAAUAGAGUUUGCUAU&UUAGCAACUUCUAUUUUUUUU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN7461_c0_g1_2830_TPlot.pdf
TRINITY_DN7461_c0_g2:208	si_s68	TRINITY_DN7461_c0_g2	197	217	208	-23.10	-15.10	0.653679653679654	12	6-20,212-198	1-5,217-213[UP5];21-21,197-197[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGAGAAGAAAAAUGGAUGACA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7461_c0_g2_208_TPlot.pdf
TRINITY_DN7461_c0_g2:538	si_s697	TRINITY_DN7461_c0_g2	527	547	538	-26.90	-17.70	0.657992565055762	9	2-10,546-538;13-19,535-529	1-1,547-547[UP5];11-12,537-536[SIL];20-21,528-527[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	UAGCUAGUAUUUUGACUAAUA&AAUUAGUCGAUUUAUUAGUGA	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN7461_c0_g2_538_TPlot.pdf
TRINITY_DN7461_c0_g2:541	si_s694	TRINITY_DN7461_c0_g2	530	550	541	-23.90	-16.30	0.682008368200837	10.5	5-13,546-538;16-21,535-530	1-4,550-547[UP5];14-15,537-536[SIL]	((((((..(((((((((....&....)))))))))..))))))	CUAGUAUUUUGACUAAUAAAU&UUUAAUUAGUCGAUUUAUUAG	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN7461_c0_g2_541_TPlot.pdf
TRINITY_DN7461_c0_g2:835	si_s53	TRINITY_DN7461_c0_g2	824	843	835	-31.20	-20.30	0.650641025641026	7.5	1-5,843-839;8-16,837-829;18-21,827-824	6-7,838-838[AILq];17-17,828-828[SIL]	((((.(((((((((.-(((((&)))))..))))))))).))))	GAGUCGCUAACUUGU-GUCUA&UGGAUUUCAAGUUAGCAACUU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN7461_c0_g2_835_TPlot.pdf
TRINITY_DN7465_c0_g1:810	si_a503	TRINITY_DN7465_c0_g1	798	819	810	-32.10	-21.72	0.676635514018691	5	1-13,819-807;17-20,802-799	14-16,806-803[AILt];21-21,798-798[UP3]	.((((....(((((((((((((&)))))))))))))-...)))).	GAUUCAGCUGGAAGACGAAAAA&UUUUUCGUCUUCC-UUGGAAUG	4	0.999996457062207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN7465_c0_g1_810_TPlot.pdf
TRINITY_DN7469_c0_g1:64	si_a64	TRINITY_DN7469_c0_g1	53	72	64	-29.40	-21.20	0.72108843537415	5	1-4,72-69;6-19,68-55	5-5,x-x[BULq];20-21,54-53[UP3]	..((((((((((((((-((((&)))).))))))))))))))..	AUACAAUUUGAAAGGA-CGAG&CUCGCUUCUUUCAAAUUGUUU	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN7469_c0_g1_64_TPlot.pdf
TRINITY_DN7469_c0_g1:65	si_a63	TRINITY_DN7469_c0_g1	54	73	65	-30.20	-23.00	0.76158940397351	4	1-5,73-69;7-20,68-55	6-6,x-x[BULq];21-21,54-54[UP3]	.((((((((((((((-(((((&))))).)))))))))))))).	UACAAUUUGAAAGGA-CGAGU&ACUCGCUUCUUUCAAAUUGUU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN7469_c0_g1_65_TPlot.pdf
TRINITY_DN7470_c0_g1:1717	si_a735	TRINITY_DN7470_c0_g1	1706	1725	1717	-41.70	-27.40	0.657074340527578	7	1-9,1725-1717;12-18,1715-1709;20-21,1707-1706	10-11,1716-1716[AILq];19-19,1708-1708[SIL]	((.(((((((.-(((((((((&)))))))))..))))))).))	CAGGGCCAGGA-UGAGGAUGC&GCAUCUUUACCCCUGGCCAUG	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a735_TRINITY_DN7470_c0_g1_1717_TPlot.pdf
TRINITY_DN7470_c0_g1:1767	si_a635	TRINITY_DN7470_c0_g1	1756	1778	1767	-26.10	-17.30	0.662835249042146	11	2-8,1777-1771;10-18,1767-1759	1-1,1778-1778[UP5];9-9,1770-1768[AILt];19-21,1758-1756[UP3]	...(((((((((...(((((((.&.)))))))--.)))))))))...	CUGACUCAAAGAUAUAUCGACAA&AUGUCGAU--UUUUUUGAGUAAU	2	0.999999754909921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN7470_c0_g1_1767_TPlot.pdf
TRINITY_DN7470_c0_g1:1771	si_a633	TRINITY_DN7470_c0_g1	1758	1780	1771	-26.40	-17.30	0.65530303030303	12.5	4-10,1777-1771;12-20,1767-1759	1-3,1780-1778[UP5];11-11,1770-1768[AILt];21-21,1758-1758[UP3]	.(((((((((...(((((((...&...)))))))--.))))))))).	GACUCAAAGAUAUAUCGACAAAG&UUAUGUCGAU--UUUUUUGAGUA	2	0.999999818197989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN7470_c0_g1_1771_TPlot.pdf
TRINITY_DN7470_c0_g1:3120	si_a194	TRINITY_DN7470_c0_g1	3109	3129	3120	-29.40	-21.00	0.714285714285714	11	1-13,3129-3117	14-21,3116-3109[UP3]	........(((((((((((((&)))))))))))))........	ACUGUGACGUGAGCGGGGGAA&UUUCCCUGUUCACUAAUAAAU	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN7470_c0_g1_3120_TPlot.pdf
TRINITY_DN7470_c0_g1:3121	si_a193	TRINITY_DN7470_c0_g1	3110	3130	3121	-30.90	-21.10	0.68284789644013	11	2-14,3129-3117	1-1,3130-3130[UP5];15-21,3116-3110[UP3]	.......(((((((((((((.&.))))))))))))).......	CUGUGACGUGAGCGGGGGAAC&CUUUCCCUGUUCACUAAUAAA	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN7470_c0_g1_3121_TPlot.pdf
TRINITY_DN7470_c0_g1:3123	si_a191	TRINITY_DN7470_c0_g1	3112	3132	3123	-32.00	-21.10	0.659375	13	4-16,3129-3117	1-3,3132-3130[UP5];17-21,3116-3112[UP3]	.....(((((((((((((...&...))))))))))))).....	GUGACGUGAGCGGGGGAACGC&AUCUUUCCCUGUUCACUAAUA	4	0.999527897861199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN7470_c0_g1_3123_TPlot.pdf
TRINITY_DN7470_c0_g1:3163	si_a780	TRINITY_DN7470_c0_g1	3147	3172	3163	-27.30	-17.80	0.652014652014652	12.5	3-14,3170-3159;15-20,3153-3148	1-2,3172-3171[UP5];x-x,3158-3154[BULt];21-21,3147-3147[UP3]	.((((((.....((((((((((((..&..))))))))))))-----)))))).	AAGGAGACCUCUGUGGGAGAGUUGCU&UUCAACUCUUCUAU-----UUUUCUA	4	0.999999985686521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN7470_c0_g1_3163_TPlot.pdf
TRINITY_DN7470_c0_g1:3168	si_s61	TRINITY_DN7470_c0_g1	3155	3177	3168	-26.50	-17.50	0.660377358490566	10.5	2-13,3176-3165;14-17,3162-3159	1-1,3177-3177[UP5];x-x,3164-3163[BULt];18-21,3158-3155[UP3]	....((((..((((((((((((.&.))))))))))))--))))....	CUCUGUGGGAGAGUUGCUGGCUC&AAGUUAGCAACUU--CUAUUUUU	4	0.99998401183954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN7470_c0_g1_3168_TPlot.pdf
TRINITY_DN7470_c0_g1:3463	si_a364	TRINITY_DN7470_c0_g1	3452	3472	3463	-27.70	-19.90	0.71841155234657	8	2-16,3471-3457	1-1,3472-3472[UP5];17-21,3456-3452[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUCGCUUGAUCUGAUCAGAAA&AUUUUGAUCGGAUCAAAAAUG	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN7470_c0_g1_3463_TPlot.pdf
TRINITY_DN7470_c0_g1:3468	si_a359	TRINITY_DN7470_c0_g1	3457	3477	3468	-29.20	-21.20	0.726027397260274	8.5	3-5,3475-3473;7-21,3471-3457	1-2,3477-3476[UP5];6-6,3472-3472[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UUGAUCUGAUCAGAAAGGGCU&AUUCUAUUUUGAUCGGAUCAA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN7470_c0_g1_3468_TPlot.pdf
TRINITY_DN7473_c1_g1:180	si_s99	TRINITY_DN7473_c1_g1	168	189	180	-34.60	-25.70	0.742774566473988	6	3-13,187-177;14-21,175-168	1-2,189-188[UP5];x-x,176-176[BULt]	((((((((.(((((((((((..&..)))))))))))-))))))))	UUUUCCAAUUCCGAGGUGAAAU&UCUUCGCUUCGGA-UUGGAAAA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN7473_c1_g1_180_TPlot.pdf
TRINITY_DN7476_c0_g1:2751	si_s891	TRINITY_DN7476_c0_g1	2740	2760	2751	-29.60	-19.80	0.668918918918919	17	8-20,2753-2741	1-7,2760-2754[UP5];21-21,2740-2740[UP3]	.(((((((((((((.......&.......))))))))))))).	AUGAAGAGAGGGCUAAAACGG&AUAAAUAGGCUUUCUCUUCAA	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN7476_c0_g1_2751_TPlot.pdf
TRINITY_DN7476_c0_g1:2963	si_s78	TRINITY_DN7476_c0_g1	2952	2972	2963	-26.20	-18.00	0.687022900763359	6.5	1-8,2972-2965;10-14,2963-2959;16-21,2957-2952	9-9,2964-2964[SIL];15-15,2958-2958[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	AGGAGGUAGGAAUGAAAGAGG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7476_c0_g1_2963_TPlot.pdf
TRINITY_DN7476_c1_g1:44	si_s79	TRINITY_DN7476_c1_g1	33	53	44	-26.20	-18.70	0.713740458015267	6	1-11,53-43;14-21,40-33	12-13,42-41[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AAGAAGAACAGGAGGAGAAAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7476_c1_g1_44_TPlot.pdf
TRINITY_DN7476_c1_g1:45	si_s78	TRINITY_DN7476_c1_g1	34	54	45	-26.20	-18.00	0.687022900763359	6	2-12,53-43;15-21,40-34	1-1,54-54[UP5];13-14,42-41[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AGAAGAACAGGAGGAGAAAAU&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7476_c1_g1_45_TPlot.pdf
TRINITY_DN7476_c1_g1:46	si_s77	TRINITY_DN7476_c1_g1	35	55	46	-25.50	-16.70	0.654901960784314	8	3-13,53-43;16-21,40-35	1-2,55-54[UP5];14-15,42-41[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	GAAGAACAGGAGGAGAAAAUA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7476_c1_g1_46_TPlot.pdf
TRINITY_DN7476_c1_g1:846	si_s76	TRINITY_DN7476_c1_g1	835	855	846	-23.60	-18.10	0.766949152542373	6.5	2-7,854-849;9-19,847-837	1-1,855-855[UP5];8-8,848-848[SIL];20-21,836-835[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	GCGAAAGGGAGGAUAAAAAAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999998946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7476_c1_g1_846_TPlot.pdf
TRINITY_DN7476_c1_g3:2296	si_a787	TRINITY_DN7476_c1_g3	2287	2305	2296	-26.30	-17.80	0.67680608365019	6	1-13,2305-2293;17-20,2291-2288	14-16,2292-2292[AILq];21-21,2287-2287[UP3]	.((((.--(((((((((((((&)))))))))))))...)))).	CGGAAC--AGAAAAGUAGAGG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999986367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7476_c1_g3_2296_TPlot.pdf
TRINITY_DN7476_c1_g3:3122	si_s79	TRINITY_DN7476_c1_g3	3106	3131	3122	-26.20	-18.90	0.721374045801527	9	1-12,3131-3120;13-17,3118-3114;18-21,3109-3106	x-x,3119-3119[BULt];x-x,3113-3110[BULt]	((((....(((((.((((((((((((&))))))))))))-)))))----))))	GAGACACCAGAGAGGGAAAGAGAAGA&UUUUUUCUUUCC-UUUCU----UCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7476_c1_g3_3122_TPlot.pdf
TRINITY_DN7476_c1_g3:6533	si_s81	TRINITY_DN7476_c1_g3	6523	6542	6533	-28.90	-20.60	0.71280276816609	6	2-15,6541-6528;17-19,6527-6525	1-1,6542-6542[UP5];16-16,x-x[BULq];20-21,6524-6523[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	CAAAG-AGAGAGGAAAGAGAG&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7476_c1_g3_6533_TPlot.pdf
TRINITY_DN7476_c1_g3:8238	si_a500	TRINITY_DN7476_c1_g3	8227	8247	8238	-34.40	-23.50	0.683139534883721	6	2-9,8246-8239;11-19,8237-8229	1-1,8247-8247[UP5];10-10,8238-8238[SIL];20-21,8228-8227[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AGCAAGGAAGAAGAAAGACGC&UCGUUUUUCGUCUUCCUUGGA	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN7476_c1_g3_8238_TPlot.pdf
TRINITY_DN7476_c1_g3:8241	si_a497	TRINITY_DN7476_c1_g3	8230	8249	8241	-32.00	-22.70	0.709375	4	1-3,8249-8247;5-12,8246-8239;14-21,8237-8230	4-4,x-x[BULq];13-13,8238-8238[SIL]	((((((((.((((((((-(((&))).)))))))).))))))))	AAGGAAGAAGAAAGACG-CAU&AUGUCGUUUUUCGUCUUCCUU	3	0.999994692112501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7476_c1_g3_8241_TPlot.pdf
TRINITY_DN7476_c1_g3:8342	si_a178	TRINITY_DN7476_c1_g3	8331	8350	8342	-32.90	-21.40	0.650455927051672	6.5	1-9,8350-8342;11-13,8341-8339;15-21,8337-8331	10-10,x-x[BULq];14-14,8338-8338[SIL]	(((((((.(((-(((((((((&))))))))).))).)))))))	GGAGGGAGGUU-UUUAGGCGG&CCGUCUAGAUAAUAUCUUUCC	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN7476_c1_g3_8342_TPlot.pdf
TRINITY_DN7476_c2_g1:437	si_s622	TRINITY_DN7476_c2_g1	425	449	437	-34.20	-22.52	0.658479532163743	12.5	1-5,449-445;8-14,439-433;15-21,431-425	6-7,444-440[AILt];x-x,432-432[BULt]	(((((((.(((((((.....(((((&)))))---..)))))))-)))))))	CUGCGGACAGGAUCGGAGCGUGGAU&AUCCA---AGCGAUCUU-UUCGUAG	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s622_TRINITY_DN7476_c2_g1_437_TPlot.pdf
TRINITY_DN7476_c2_g1:514	si_s75	TRINITY_DN7476_c2_g1	500	523	514	-24.00	-15.94	0.664166666666667	8.5	1-13,523-511;15-20,506-501	14-14,510-507[AILt];21-21,500-500[UP3]	.((((((....(((((((((((((&)))))))))))))---.)))))).	UGAAAGGCUGCGGGAAAAAGGAUA&UAUUUUUUUUCUU---UCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7476_c2_g1_514_TPlot.pdf
TRINITY_DN7476_c2_g1:533	si_s478	TRINITY_DN7476_c2_g1	522	543	533	-27.20	-18.80	0.691176470588235	8.5	3-7,541-537;8-19,535-524	1-2,543-542[UP5];x-x,536-536[BULt];20-21,523-522[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	UAAAAUAAGUAUAGAGGUCCUA&ACGGAUC-CUAUAUUUAUUUAA	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s478_TRINITY_DN7476_c2_g1_533_TPlot.pdf
TRINITY_DN7476_c2_g1:534	si_s477	TRINITY_DN7476_c2_g1	523	544	534	-27.10	-18.80	0.693726937269373	9.5	4-8,541-537;9-20,535-524	1-3,544-542[UP5];x-x,536-536[BULt];21-21,523-523[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	AAAAUAAGUAUAGAGGUCCUAG&AACGGAUC-CUAUAUUUAUUUA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN7476_c2_g1_534_TPlot.pdf
TRINITY_DN7476_c2_g2:676	si_a75	TRINITY_DN7476_c2_g2	665	685	676	-21.30	-15.20	0.713615023474178	13	5-19,681-667	1-4,685-682[UP5];20-21,666-665[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGGAUGAUGGAAGACGAAAGG&CAAAUUGUUUUUCAUUAUUAA	4	0.999956936244205	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN7476_c2_g2_676_TPlot.pdf
TRINITY_DN7476_c2_g2:776	si_a326	TRINITY_DN7476_c2_g2	761	785	776	-26.20	-17.30	0.66030534351145	5.5	1-12,785-774;14-18,772-768;19-21,763-761	13-13,773-773[SIL];x-x,767-764[BULt]	(((....(((((.((((((((((((&)))))))))))).)))))----)))	GGCUGGAAAGGACUAAAAAAAUCAU&AUGAUUUUUUUAUUCCUU----GUC	4	0.999999999847428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN7476_c2_g2_776_TPlot.pdf
TRINITY_DN7476_c3_g1:1331	si_a411	TRINITY_DN7476_c3_g1	1320	1340	1331	-17.90	-12.20	0.681564245810056	7.5	2-13,1339-1328;15-19,1326-1322	1-1,1340-1340[UP5];14-14,1327-1327[SIL];20-21,1321-1320[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	CGUUGUUCAAAUGUGAACGAU&UUUGUUUAUAUUUAAAUAAAU	4	0.999999923809806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN7476_c3_g1_1331_TPlot.pdf
TRINITY_DN7476_c3_g1:695	si_a142	TRINITY_DN7476_c3_g1	684	703	695	-23.50	-15.90	0.676595744680851	8	2-7,702-697;9-19,696-686	1-1,703-703[UP5];8-8,x-x[BULq];20-21,685-684[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	CCAGAACAGCAGC-AUUGAUG&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999871404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN7476_c3_g1_695_TPlot.pdf
TRINITY_DN7476_c3_g1:696	si_a141	TRINITY_DN7476_c3_g1	685	704	696	-23.80	-15.90	0.668067226890756	9	3-8,702-697;10-20,696-686	1-2,704-703[UP5];9-9,x-x[BULq];21-21,685-685[UP3]	.(((((((((((-((((((..&..)))))).))))))))))).	CAGAACAGCAGC-AUUGAUGA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN7476_c3_g1_696_TPlot.pdf
TRINITY_DN7476_c3_g1:697	si_a140	TRINITY_DN7476_c3_g1	686	705	697	-25.20	-16.80	0.666666666666667	7	1-2,705-704;4-9,702-697;11-21,696-686	3-3,703-703[SIL];10-10,x-x[BULq]	(((((((((((-((((((.((&)).)))))).)))))))))))	AGAACAGCAGC-AUUGAUGAC&GUAAUUAAUCGUUGUUGUUUU	2	0.999839496768338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN7476_c3_g1_697_TPlot.pdf
TRINITY_DN747_c0_g1:2533	si_a612	TRINITY_DN747_c0_g1	2523	2541	2533	-35.10	-23.90	0.680911680911681	7.5	2-8,2540-2534;10-11,2533-2532;13-20,2531-2524	1-1,2541-2541[UP5];9-9,x-x[BULq];12-12,x-x[BULq];21-21,2523-2523[UP3]	.((((((((-((-(((((((.&.))))))).)).)))))))).	CACGCCUGG-CG-UUGGGAUG&AAUUCCAAUCGACUAGGCGUA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a612_TRINITY_DN747_c0_g1_2533_TPlot.pdf
TRINITY_DN747_c0_g1:2534	si_a611	TRINITY_DN747_c0_g1	2524	2542	2534	-36.40	-23.70	0.651098901098901	7.5	3-9,2540-2534;11-12,2533-2532;14-21,2531-2524	1-2,2542-2541[UP5];10-10,x-x[BULq];13-13,x-x[BULq]	((((((((-((-(((((((..&..))))))).)).))))))))	ACGCCUGG-CG-UUGGGAUGA&CAAUUCCAAUCGACUAGGCGU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN747_c0_g1_2534_TPlot.pdf
TRINITY_DN747_c0_g4:1724	si_a663	TRINITY_DN747_c0_g4	1710	1733	1724	-31.40	-21.72	0.69171974522293	14.5	1-10,1733-1724;13-18,1718-1713	11-12,1723-1719[AILt];19-21,1712-1710[UP3]	...((((((.....((((((((((&))))))))))---..))))))...	UACGGGAUCUAAAUUGGGCAUUUC&GAAAUGCCUA---UUGAUUCCUUA	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN747_c0_g4_1724_TPlot.pdf
TRINITY_DN747_c0_g4:1858	si_a509	TRINITY_DN747_c0_g4	1849	1867	1858	-37.30	-25.28	0.677747989276139	6	1-13,1867-1855;18-21,1852-1849	14-17,1854-1853[AILq]	((((..--(((((((((((((&)))))))))))))....))))	GCCUGU--UUUCAAGGAAGGC&GUCUUCCUUGGAAUGUAAGGC	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a509_TRINITY_DN747_c0_g4_1858_TPlot.pdf
TRINITY_DN747_c0_g4:2526	si_s71	TRINITY_DN747_c0_g4	2512	2535	2526	-25.70	-17.80	0.692607003891051	10.5	1-5,2535-2531;7-12,2529-2524;13-21,2520-2512	6-6,2530-2530[SIL];x-x,2523-2521[BULt]	(((((((((...((((((.(((((&))))).))))))---)))))))))	AGGAGAGAACGCAAGAAGAAGAAG&CUUCUAUUUUUU---UUCUUUCCU	2	0.999999999997808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN747_c0_g4_2526_TPlot.pdf
TRINITY_DN747_c0_g4:2555	si_s79	TRINITY_DN747_c0_g4	2542	2564	2555	-26.20	-23.20	0.885496183206107	6	1-14,2564-2551;15-21,2548-2542	x-x,2550-2549[BULt]	(((((((..((((((((((((((&))))))))))))))--)))))))	GAGAAGAAAGAGGAGAGGAGAAA&UUUUUUCUUUCCUU--UCUUCUU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN747_c0_g4_2555_TPlot.pdf
TRINITY_DN747_c0_g4:2558	si_s76	TRINITY_DN747_c0_g4	2545	2567	2558	-23.60	-18.10	0.766949152542373	9.5	3-17,2565-2551;18-21,2548-2545	1-2,2567-2566[UP5];x-x,2550-2549[BULt]	((((..(((((((((((((((..&..)))))))))))))))--))))	AAGAAAGAGGAGAGGAGAAAGCU&AUUUUUUUUCUUUCCUU--UCUU	4	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN747_c0_g4_2558_TPlot.pdf
TRINITY_DN747_c0_g4:2560	si_s74	TRINITY_DN747_c0_g4	2549	2569	2560	-25.00	-17.10	0.684	12	5-20,2565-2550	1-4,2569-2566[UP5];21-21,2549-2549[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGAGGAGAGGAGAAAGCUUU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN747_c0_g4_2560_TPlot.pdf
TRINITY_DN747_c0_g4:2561	si_s73	TRINITY_DN747_c0_g4	2550	2573	2561	-24.00	-17.84	0.743333333333333	12	1-4,2573-2570;6-21,2565-2550	5-5,2569-2566[AILt]	((((((((((((((((....((((&))))---.))))))))))))))))	AGAGGAGAGGAGAAAGCUUUUAGA&UCUA---UUUUUUUUCUUUCCUUU	4	0.99999999949483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN747_c0_g4_2561_TPlot.pdf
TRINITY_DN747_c0_g4:2565	si_s891	TRINITY_DN747_c0_g4	2554	2574	2565	-29.60	-19.40	0.655405405405405	14.5	7-19,2568-2556	1-6,2574-2569[UP5];20-21,2555-2554[UP3]	..(((((((((((((......&......)))))))))))))..	GAGAGGAGAAAGCUUUUAGAA&AUAAAUAGGCUUUCUCUUCAA	4	0.999998541607459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN747_c0_g4_2565_TPlot.pdf
TRINITY_DN747_c0_g4:2566	si_s890	TRINITY_DN747_c0_g4	2555	2575	2566	-29.50	-19.40	0.657627118644068	15.5	8-20,2568-2556	1-7,2575-2569[UP5];21-21,2555-2555[UP3]	.(((((((((((((.......&.......))))))))))))).	AGAGGAGAAAGCUUUUAGAAG&AAUAAAUAGGCUUUCUCUUCA	3	0.999990058145084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN747_c0_g4_2566_TPlot.pdf
TRINITY_DN747_c0_g4:2634	si_s77	TRINITY_DN747_c0_g4	2622	2643	2634	-25.50	-16.80	0.658823529411765	6	1-12,2643-2632;14-15,2630-2629;16-21,2627-2622	13-13,2631-2631[SIL];x-x,2628-2628[BULt]	((((((.((.((((((((((((&)))))))))))).))-))))))	GAAGAAUAGCGAGGAAGAGAAA&UUUUUUUUCUUUCCU-UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN747_c0_g4_2634_TPlot.pdf
TRINITY_DN747_c0_g4:2647	si_s85	TRINITY_DN747_c0_g4	2630	2657	2647	-33.80	-22.60	0.668639053254438	17.5	2-9,2656-2649;10-11,2647-2646;12-21,2639-2630	1-1,2657-2657[UP5];x-x,2648-2648[BULt];x-x,2645-2640[BULt]	((((((((((......((.((((((((.&.))))))))-))------))))))))))	GCGAGGAAGAGAAAGCAGAAGAGGAAGA&CUUUCCUUU-CU------UCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN747_c0_g4_2647_TPlot.pdf
TRINITY_DN747_c0_g4:2653	si_s88	TRINITY_DN747_c0_g4	2641	2662	2653	-34.80	-24.30	0.698275862068966	6	3-16,2660-2647;17-20,2645-2642	1-2,2662-2661[UP5];x-x,2646-2646[BULt];21-21,2641-2641[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	AAAGCAGAAGAGGAAGAAAGUG&UCCUUUCUUCUUCUUC-GCUUC	4	0.999999991802264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN747_c0_g4_2653_TPlot.pdf
TRINITY_DN747_c0_g4:2655	si_s86	TRINITY_DN747_c0_g4	2643	2664	2655	-32.90	-23.40	0.711246200607903	8.5	5-18,2660-2647;19-21,2645-2643	1-4,2664-2661[UP5];x-x,2646-2646[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	AGCAGAAGAGGAAGAAAGUGUC&UUUCCUUUCUUCUUCUUC-GCU	4	0.999999987612286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN747_c0_g4_2655_TPlot.pdf
TRINITY_DN747_c0_g4:2722	si_a143	TRINITY_DN747_c0_g4	2711	2731	2722	-25.10	-16.90	0.673306772908366	13.5	5-18,2727-2714	1-4,2731-2728[UP5];19-21,2713-2711[UP3]	...((((((((((((((....&....))))))))))))))...	AAGAAGGCGACAGCGGUAUAG&AUUAAUCGUUGUUGUUUUAAG	3	0.99998350841681	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN747_c0_g4_2722_TPlot.pdf
TRINITY_DN747_c0_g4:2724	si_a141	TRINITY_DN747_c0_g4	2713	2733	2724	-23.80	-16.90	0.710084033613445	15.5	7-20,2727-2714	1-6,2733-2728[UP5];21-21,2713-2713[UP3]	.((((((((((((((......&......)))))))))))))).	GAAGGCGACAGCGGUAUAGAU&UAAUUAAUCGUUGUUGUUUUA	4	0.999835249032249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN747_c0_g4_2724_TPlot.pdf
TRINITY_DN747_c0_g4:2798	si_s74	TRINITY_DN747_c0_g4	2786	2807	2798	-25.00	-18.20	0.728	8	4-15,2804-2793;16-21,2791-2786	1-3,2807-2805[UP5];x-x,2792-2792[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAAAGGAAAAGAAGAAGAAAAA&CUAUUUUUUUUCUUU-CCUUUC	4	0.999999999042038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN747_c0_g4_2798_TPlot.pdf
TRINITY_DN747_c0_g4:2983	si_s527	TRINITY_DN747_c0_g4	2973	2992	2983	-28.00	-18.40	0.657142857142857	4.5	2-17,2991-2976;19-20,2975-2974	1-1,2992-2992[UP5];18-18,x-x[BULq];21-21,2973-2973[UP3]	.((-((((((((((((((((.&.)))))))))))))))).)).	UGA-UAGAGAUGAUUUCGAAG&AUUCGAAAUCAUUUUUGAUCC	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN747_c0_g4_2983_TPlot.pdf
TRINITY_DN747_c0_g4:3111	si_s71	TRINITY_DN747_c0_g4	3100	3120	3111	-25.70	-22.40	0.8715953307393	7.5	1-19,3120-3102	20-21,3101-3100[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AAGAGAGAAGAGGGAUGGAAG&CUUCUAUUUUUUUUCUUUCCU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN747_c0_g4_3111_TPlot.pdf
TRINITY_DN747_c0_g4:3297	si_a333	TRINITY_DN747_c0_g4	3286	3306	3297	-30.60	-20.50	0.669934640522876	9.5	1-4,3306-3303;6-16,3301-3291	5-5,3302-3302[SIL];17-21,3290-3286[UP3]	.....(((((((((((.((((&)))).))))))))))).....	AGCAAGGGGCAAGGAGAAAGA&UUUUAUUCCUUGUCCCGAAAA	2	0.993530718821175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN747_c0_g4_3297_TPlot.pdf
TRINITY_DN747_c0_g4:3300	si_a330	TRINITY_DN747_c0_g4	3289	3308	3300	-30.50	-21.70	0.711475409836065	7.5	2-7,3307-3302;9-19,3301-3291	1-1,3308-3308[UP5];8-8,x-x[BULq];20-21,3290-3289[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	AAGGGGCAAGGAG-AAAGAAU&UUUUUUUAUUCCUUGUCCCGA	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN747_c0_g4_3300_TPlot.pdf
TRINITY_DN747_c0_g4:3301	si_a328	TRINITY_DN747_c0_g4	3291	3309	3301	-30.10	-23.10	0.767441860465116	7	1-9,3309-3301;12-21,3300-3291	10-11,x-x[BULq]	((((((((((--(((((((((&)))))))))..))))))))))	GGGGCAAGGA--GAAAGAAUU&GAUUUUUUUAUUCCUUGUCCC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN747_c0_g4_3301_TPlot.pdf
TRINITY_DN747_c0_g4:3340	si_a120	TRINITY_DN747_c0_g4	3329	3349	3340	-30.50	-21.60	0.708196721311475	7	1-11,3349-3339;13-16,3337-3334	12-12,3338-3338[SIL];17-21,3333-3329[UP3]	.....((((.(((((((((((&))))))))))).)))).....	CUGAAGCUACAAAACAAGCUC&GAGCUUGUUUUAUAGCAAUAG	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN747_c0_g4_3340_TPlot.pdf
TRINITY_DN747_c1_g1:1638	si_s437	TRINITY_DN747_c1_g1	1627	1650	1638	-19.70	-14.30	0.725888324873097	9	2-8,1649-1643;9-21,1639-1627	1-1,1650-1650[UP5];x-x,1642-1640[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	UUAUAUAUAAUGUUUCGUGAUUAG&AUAAUUAC---AUAUUAUAUAUAA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN747_c1_g1_1638_TPlot.pdf
TRINITY_DN7486_c1_g1:2341	si_a352	TRINITY_DN7486_c1_g1	2330	2351	2341	-22.50	-14.90	0.662222222222222	6.5	1-6,2351-2346;7-18,2344-2333;20-21,2331-2330	x-x,2345-2345[BULt];19-19,2332-2332[SIL]	((.((((((((((((.((((((&))))))-)))))))))))).))	GAACGAGGUAGAAUUCAGUGUU&AAUAUU-AAUUCUAUUUUGAUC	4	0.999974296613986	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN7486_c1_g1_2341_TPlot.pdf
TRINITY_DN7486_c1_g1:2342	si_a351	TRINITY_DN7486_c1_g1	2331	2352	2342	-20.50	-14.20	0.692682926829268	8.5	2-7,2351-2346;8-19,2344-2333	1-1,2352-2352[UP5];x-x,2345-2345[BULt];20-21,2332-2331[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	AACGAGGUAGAAUUCAGUGUUA&AAAUAUU-AAUUCUAUUUUGAU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN7486_c1_g1_2342_TPlot.pdf
TRINITY_DN7487_c0_g1:2133	si_s244	TRINITY_DN7487_c0_g1	2122	2142	2133	-33.80	-24.20	0.715976331360947	5.5	1-13,2142-2130;15-19,2128-2124	14-14,2129-2129[SIL];20-21,2123-2122[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	GAAUUGGAAAGUGCCUGUUGA&UCAAUAGGCAUUUCCCGAUAU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN7487_c0_g1_2133_TPlot.pdf
TRINITY_DN7489_c0_g1:265	si_s184	TRINITY_DN7489_c0_g1	253	274	265	-33.40	-23.30	0.697604790419162	7.5	1-4,274-271;6-6,269-269;8-15,267-260;17-21,257-253	5-5,270-270[SIL];7-7,268-268[SIL];16-16,259-258[AILt]	(((((..((((((((.(.((((&)))).).))))))))-.)))))	CAGAAGAAAUCGUUGGUGGGGC&GCCCGAGUAACGAUU-AUUUUG	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN7489_c0_g1_265_TPlot.pdf
TRINITY_DN748_c0_g1:1817	si_a403	TRINITY_DN748_c0_g1	1806	1826	1817	-22.00	-15.80	0.718181818181818	6	1-11,1826-1816;13-19,1814-1808	12-12,1815-1815[SIL];20-21,1807-1806[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	AUGUAUGAAAGAAACAAUUCU&AGAAUUGUUUUGUUUAUAUUU	2	0.997915632487503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN748_c0_g1_1817_TPlot.pdf
TRINITY_DN748_c0_g1:1818	si_a402	TRINITY_DN748_c0_g1	1807	1827	1818	-22.40	-15.80	0.705357142857143	5	2-12,1826-1816;14-20,1814-1808	1-1,1827-1827[UP5];13-13,1815-1815[SIL];21-21,1807-1807[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UGUAUGAAAGAAACAAUUCUC&UAGAAUUGUUUUGUUUAUAUU	2	0.997863096634582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN748_c0_g1_1818_TPlot.pdf
TRINITY_DN748_c0_g1:1819	si_a401	TRINITY_DN748_c0_g1	1808	1828	1819	-22.60	-15.80	0.699115044247788	5.5	3-13,1826-1816;15-21,1814-1808	1-2,1828-1827[UP5];14-14,1815-1815[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GUAUGAAAGAAACAAUUCUCA&AUAGAAUUGUUUUGUUUAUAU	2	0.997966876744423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN748_c0_g1_1819_TPlot.pdf
TRINITY_DN748_c0_g1:2551	si_a757	TRINITY_DN748_c0_g1	2535	2560	2551	-33.10	-22.70	0.685800604229607	14	1-7,2560-2554;9-11,2552-2550;12-21,2544-2535	8-8,2553-2553[SIL];x-x,2549-2545[BULt]	((((((((((.....(((.(((((((&))))))).)))-----))))))))))	GAUCAGAAAUCUACUCCACAGGAGGU&ACCUCCUUUGG-----GUUUUUGAUU	4	0.999986162919743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN748_c0_g1_2551_TPlot.pdf
TRINITY_DN748_c0_g1:256	si_a788	TRINITY_DN748_c0_g1	243	265	256	-24.80	-16.68	0.67258064516129	9	1-12,265-254;15-20,249-244	13-14,253-250[AILt];21-21,243-243[UP3]	.((((((....((((((((((((&))))))))))))--..)))))).	CUGGAGGCGACAGAGAAAUAGAA&UUCUAUUUUUCU--AUUUUCCAA	4	0.999999999995883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN748_c0_g1_256_TPlot.pdf
TRINITY_DN748_c0_g1:260	si_a784	TRINITY_DN748_c0_g1	249	270	260	-24.70	-16.10	0.651821862348178	8.5	2-4,269-267;5-16,265-254	1-1,270-270[UP5];x-x,266-266[BULt];17-21,253-249[UP3]	.....((((((((((((.(((.&.)))-)))))))))))).....	GCGACAGAGAAAUAGAACGAGA&ACUC-UUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN748_c0_g1_260_TPlot.pdf
TRINITY_DN748_c0_g1:261	si_a783	TRINITY_DN748_c0_g1	250	271	261	-24.70	-16.10	0.651821862348178	9.5	3-5,269-267;6-17,265-254	1-2,271-270[UP5];x-x,266-266[BULt];18-21,253-250[UP3]	....((((((((((((.(((..&..)))-))))))))))))....	CGACAGAGAAAUAGAACGAGAC&AACUC-UUCUAUUUUUCUAUUU	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN748_c0_g1_261_TPlot.pdf
TRINITY_DN748_c0_g1:2816	si_a329	TRINITY_DN748_c0_g1	2805	2825	2816	-29.60	-19.40	0.655405405405405	7	1-7,2825-2819;10-18,2816-2808;20-21,2806-2805	8-9,2818-2817[SIL];19-19,2807-2807[SIL]	((.(((((((((..(((((((&)))))))..))))))))).))	CGAGACAAGGAAGCAGAAGAU&AUUUUUUUAUUCCUUGUCCCG	2	0.999996736926663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN748_c0_g1_2816_TPlot.pdf
TRINITY_DN7490_c0_g1:193	si_a66	TRINITY_DN7490_c0_g1	184	202	193	-26.70	-18.80	0.704119850187266	7	2-11,201-192;14-20,191-185	1-1,202-202[UP5];12-13,x-x[BULq];21-21,184-184[UP3]	.(((((((--((((((((((.&.))))))))))..))))))).	CGAAGCAA--UGAAGGAAGCU&CGCUUCUUUCAAAUUGUUUUU	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN7490_c0_g1_193_TPlot.pdf
TRINITY_DN7490_c0_g1:194	si_a65	TRINITY_DN7490_c0_g1	185	203	194	-27.70	-18.80	0.67870036101083	7	3-12,201-192;15-21,191-185	1-2,203-202[UP5];13-14,x-x[BULq]	(((((((--((((((((((..&..))))))))))..)))))))	GAAGCAA--UGAAGGAAGCUA&UCGCUUCUUUCAAAUUGUUUU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN7490_c0_g1_194_TPlot.pdf
TRINITY_DN7494_c0_g1:211	si_a398	TRINITY_DN7494_c0_g1	198	220	211	-22.40	-16.00	0.714285714285714	7	1-14,220-207;15-20,204-199	x-x,206-205[BULt];21-21,198-198[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	AGAGCAAACAACAAUUUUGUGUU&AAUAUAGAAUUGUU--UUGUUUA	4	0.999356558738347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN7494_c0_g1_211_TPlot.pdf
TRINITY_DN749_c0_g1:2643	si_s73	TRINITY_DN749_c0_g1	2629	2652	2643	-24.00	-16.12	0.671666666666667	13.5	1-10,2652-2643;13-21,2637-2629	11-12,2642-2638[AILt]	(((((((((.....((((((((((&))))))))))---..)))))))))	AAAGGGAAGUUUACGGAAAAUGGA&UCUAUUUUUU---UUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN749_c0_g1_2643_TPlot.pdf
TRINITY_DN749_c0_g1:2796	si_a405	TRINITY_DN749_c0_g1	2785	2805	2796	-19.80	-13.50	0.681818181818182	8.5	1-15,2805-2791	16-21,2790-2785[UP3]	......(((((((((((((((&)))))))))))))))......	AUUUGAGUAAAUAAAACAGUU&AAUUGUUUUGUUUAUAUUUAA	2	0.999999999989219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN749_c0_g1_2796_TPlot.pdf
TRINITY_DN7500_c0_g2:298	si_s600	TRINITY_DN7500_c0_g2	288	307	298	-28.20	-18.40	0.652482269503546	6	2-11,306-297;13-14,295-294;17-21,292-288	1-1,307-307[UP5];12-12,296-296[SIL];15-16,293-293[AILq]	(((((.-((.((((((((((.&.)))))))))).))..)))))	UAAAAU-GAGUCGCUUGGGUA&AAUCCAAGCGAAUCUUUUUUA	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN7500_c0_g2_298_TPlot.pdf
TRINITY_DN7503_c0_g1:39	si_s772	TRINITY_DN7503_c0_g1	28	48	39	-23.20	-15.30	0.65948275862069	8	3-8,46-41;11-21,38-28	1-2,48-47[UP5];9-10,40-39[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	UUUAUAGCAAUUUUGAUUAUU&AUUAAUUACUAUUGCUAUAAA	2	0.999818223926229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN7503_c0_g1_39_TPlot.pdf
TRINITY_DN7503_c0_g1:4268	si_s613	TRINITY_DN7503_c0_g1	4255	4277	4268	-29.20	-20.20	0.691780821917808	8.5	1-2,4277-4276;4-10,4274-4268;11-17,4266-4260;18-21,4258-4255	3-3,4275-4275[SIL];x-x,4267-4267[BULt];x-x,4259-4259[BULt]	((((.(((((((.(((((((.((&)).)))))))-)))))))-))))	GGUCUGCUUGGAGUUUGAGAUGG&CUUUUUUAAA-UCCAAGC-GAUC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s613_TRINITY_DN7503_c0_g1_4268_TPlot.pdf
TRINITY_DN7503_c0_g1:993	si_a446	TRINITY_DN7503_c0_g1	976	1002	993	-25.50	-17.00	0.666666666666667	16	1-11,1002-992;12-18,985-979	x-x,991-986[BULt];19-21,978-976[UP3]	...(((((((......(((((((((((&)))))))))))------)))))))...	GUUGCAACGAGAUACAUUAUCUCAUAU&AUAUGAGAUAA------UUGUUGUUAU	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN7503_c0_g1_993_TPlot.pdf
TRINITY_DN7506_c0_g1:117	si_a321	TRINITY_DN7506_c0_g1	106	126	117	-26.70	-17.90	0.670411985018727	6	3-8,124-119;10-20,117-107	1-2,126-125[UP5];9-9,118-118[SIL];21-21,106-106[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	UGAAUAAAAAAACCAUGGAAC&UAUCCAUGAUUUUUUUAUUCC	3	0.999859008526984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN7506_c0_g1_117_TPlot.pdf
TRINITY_DN7507_c0_g1:568	si_a466	TRINITY_DN7507_c0_g1	555	577	568	-21.50	-15.40	0.716279069767442	6	1-10,577-568;11-13,566-564;14-21,562-555	x-x,567-567[BULt];x-x,563-563[BULt]	((((((((.(((.((((((((((&))))))))))-)))-))))))))	GCAAUGAUGUGCGAUAUUGUAUA&UAUAUAAUAU-GUA-AUUAUUGU	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN7507_c0_g1_568_TPlot.pdf
TRINITY_DN7510_c0_g1:1222	si_s316	TRINITY_DN7510_c0_g1	1211	1232	1222	-31.50	-21.30	0.676190476190476	8	1-3,1232-1230;5-9,1228-1224;10-18,1222-1214	4-4,1229-1229[SIL];x-x,1223-1223[BULt];19-21,1213-1211[UP3]	...(((((((((.(((((.(((&))).)))))-)))))))))...	CCAGUGGCAAGACAGGACCGAA&UUCUGUCCU-UCUUGUUACAAA	2	0.993844903693638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN7510_c0_g1_1222_TPlot.pdf
TRINITY_DN7510_c0_g1:1225	si_s314	TRINITY_DN7510_c0_g1	1213	1234	1225	-31.50	-21.30	0.676190476190476	9	3-5,1232-1230;7-11,1228-1224;12-20,1222-1214	1-2,1234-1233[UP5];6-6,1229-1229[SIL];x-x,1223-1223[BULt];21-21,1213-1213[UP3]	.(((((((((.(((((.(((..&..))).)))))-))))))))).	AGUGGCAAGACAGGACCGAAGA&AAUUCUGUCCU-UCUUGUUACA	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN7510_c0_g1_1225_TPlot.pdf
TRINITY_DN7510_c0_g1:1226	si_s313	TRINITY_DN7510_c0_g1	1214	1235	1226	-30.80	-20.80	0.675324675324675	10	4-6,1232-1230;8-12,1228-1224;13-21,1222-1214	1-3,1235-1233[UP5];7-7,1229-1229[SIL];x-x,1223-1223[BULt]	(((((((((.(((((.(((...&...))).)))))-)))))))))	GUGGCAAGACAGGACCGAAGAA&AAAUUCUGUCCU-UCUUGUUAC	2	0.997609809439789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN7510_c0_g1_1226_TPlot.pdf
TRINITY_DN7510_c0_g1:1315	si_a123	TRINITY_DN7510_c0_g1	1304	1324	1315	-26.60	-17.80	0.669172932330827	10	1-13,1324-1312	14-21,1311-1304[UP3]	........(((((((((((((&)))))))))))))........	AAAUCAAAGCUGUGAAACAAG&CUUGUUUUAUAGCAAUAGUAA	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN7510_c0_g1_1315_TPlot.pdf
TRINITY_DN7510_c0_g1:424	si_s72	TRINITY_DN7510_c0_g1	413	433	424	-24.10	-15.96	0.662240663900415	10	1-4,433-430;9-20,425-414	5-8,429-426[SIL];21-21,413-413[UP3]	.((((((((((((....((((&))))....)))))))))))).	UGGGAGAGAAAAAUCGAAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7510_c0_g1_424_TPlot.pdf
TRINITY_DN7510_c0_g1:852	si_a20	TRINITY_DN7510_c0_g1	841	861	852	-26.70	-18.26	0.683895131086142	11.5	1-4,861-858;9-21,853-841	5-8,857-854[SIL]	(((((((((((((....((((&))))....)))))))))))))	UGGAGCUAAAGGUUGCGAGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7510_c0_g1_852_TPlot.pdf
TRINITY_DN7512_c0_g1:13	si_s490	TRINITY_DN7512_c0_g1	1	22	13	-17.80	-12.80	0.719101123595506	8.5	2-15,21-8;16-20,6-2	1-1,22-22[UP5];x-x,7-7[BULt];21-21,1-1[UP3]	.(((((.((((((((((((((.&.))))))))))))))-))))).	AUUUGUAUUGUGUUUGAGUGGU&UUUAUUUAAAUAUAA-ACAAAA	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN7512_c0_g1_13_TPlot.pdf
TRINITY_DN7512_c0_g1:1353	si_s66	TRINITY_DN7512_c0_g1	1342	1363	1353	-26.30	-18.60	0.707224334600761	6.5	1-1,1363-1363;3-7,1361-1357;8-20,1355-1343	2-2,1362-1362[SIL];x-x,1356-1356[BULt];21-21,1342-1342[UP3]	.(((((((((((((.(((((.(&).)))))-))))))))))))).	UGAAAGAAAAUGGAGAGUUGGU&AGCAACU-UCUAUUUUUUUUCU	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN7512_c0_g1_1353_TPlot.pdf
TRINITY_DN7512_c0_g1:16	si_s487	TRINITY_DN7512_c0_g1	4	25	16	-18.40	-12.00	0.652173913043478	9	1-3,25-23;5-18,21-8;19-21,6-4	4-4,22-22[SIL];x-x,7-7[BULt]	(((.((((((((((((((.(((&))).))))))))))))))-)))	UGUAUUGUGUUUGAGUGGUUGU&AUAUUUAUUUAAAUAUAA-ACA	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN7512_c0_g1_16_TPlot.pdf
TRINITY_DN7512_c0_g1:1868	si_s74	TRINITY_DN7512_c0_g1	1857	1877	1868	-25.00	-16.40	0.656	6.5	2-11,1876-1867;13-21,1865-1857	1-1,1877-1877[UP5];12-12,1866-1866[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	GGGAGGAAGCGAAAAAAAUGC&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7512_c0_g1_1868_TPlot.pdf
TRINITY_DN7512_c0_g1:2180	si_s897	TRINITY_DN7512_c0_g1	2169	2190	2180	-31.30	-21.10	0.674121405750799	7	2-9,2189-2182;10-13,2180-2177;16-20,2174-2170	1-1,2190-2190[UP5];x-x,2181-2181[BULt];14-15,2176-2175[SIL];21-21,2169-2169[UP3]	.(((((..((((.((((((((.&.))))))))-))))..))))).	GUGAAACAGAGGAAGAAAGCCA&AGGCUUUCU-CUUCAAUUUCAA	3	0.999972643704982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN7512_c0_g1_2180_TPlot.pdf
TRINITY_DN7512_c0_g1:2182	si_s896	TRINITY_DN7512_c0_g1	2170	2191	2182	-31.60	-20.90	0.661392405063291	8	3-10,2189-2182;11-14,2180-2177;17-21,2174-2170	1-2,2191-2190[UP5];x-x,2181-2181[BULt];15-16,2176-2175[SIL]	(((((..((((.((((((((..&..))))))))-))))..)))))	UGAAACAGAGGAAGAAAGCCAU&UAGGCUUUCU-CUUCAAUUUCA	2	0.999596841779756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN7512_c0_g1_2182_TPlot.pdf
TRINITY_DN7512_c0_g1:2272	si_a76	TRINITY_DN7512_c0_g1	2261	2282	2272	-21.20	-14.50	0.683962264150943	7.5	2-7,2281-2276;8-19,2274-2263	1-1,2282-2282[UP5];x-x,2275-2275[BULt];20-21,2262-2261[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	AGUGAUGGUGAAAAUACAGUUA&AAAUUGU-UUUUCAUUAUUAAG	3	0.999999899600981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN7512_c0_g1_2272_TPlot.pdf
TRINITY_DN7512_c0_g1:2273	si_a75	TRINITY_DN7512_c0_g1	2262	2283	2273	-21.30	-14.50	0.68075117370892	8.5	3-8,2281-2276;9-20,2274-2263	1-2,2283-2282[UP5];x-x,2275-2275[BULt];21-21,2262-2262[UP3]	.((((((((((((.((((((..&..))))))-)))))))))))).	GUGAUGGUGAAAAUACAGUUAA&CAAAUUGU-UUUUCAUUAUUAA	3	0.999999996443008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN7512_c0_g1_2273_TPlot.pdf
TRINITY_DN7512_c0_g1:2295	si_a765	TRINITY_DN7512_c0_g1	2284	2304	2295	-30.50	-20.30	0.665573770491803	9.5	1-5,2304-2300;7-17,2298-2288	6-6,2299-2299[SIL];18-21,2287-2284[UP3]	....(((((((((((.(((((&))))).)))))))))))....	UGGAGAUCAAUCGGAUGCCCA&UGGGUUUUUGAUUGAUUCAAC	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a765_TRINITY_DN7512_c0_g1_2295_TPlot.pdf
TRINITY_DN7512_c0_g1:2389	si_a25	TRINITY_DN7512_c0_g1	2387	2398	2389	-26.50	-18.20	0.686792452830189	3	11-21,2397-2387	10-10,2398-2398[SIL]	(((((((((((.&.)))))))))))	GGUCUUAGAACA&UUUAUUUUUAGU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN7512_c0_g1_2389_TPlot.pdf
TRINITY_DN7512_c0_g1:367	si_s75	TRINITY_DN7512_c0_g1	355	376	367	-24.00	-16.20	0.675	6	1-7,376-370;9-18,368-359;19-20,357-356	8-8,369-369[SIL];x-x,358-358[BULt];21-21,355-355[UP3]	.((.((((((((((.(((((((&))))))).))))))))))-)).	UGAUGAGGAAAGAGCAAAAAUG&UAUUUUUUUUCUUUCCUU-UCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7512_c0_g1_367_TPlot.pdf
TRINITY_DN7512_c0_g1:369	si_s73	TRINITY_DN7512_c0_g1	358	379	369	-24.00	-16.50	0.6875	7.5	1-2,379-378;3-9,376-370;11-20,368-359	x-x,377-377[BULt];10-10,369-369[SIL];21-21,358-358[UP3]	.((((((((((.(((((((.((&))-))))))).)))))))))).	UGAGGAAAGAGCAAAAAUGCGA&UC-UAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7512_c0_g1_369_TPlot.pdf
TRINITY_DN7512_c0_g1:370	si_s72	TRINITY_DN7512_c0_g1	359	380	370	-24.10	-16.60	0.688796680497925	7.5	2-3,379-378;4-10,376-370;12-21,368-359	1-1,380-380[UP5];x-x,377-377[BULt];11-11,369-369[SIL]	((((((((((.(((((((.((.&.))-))))))).))))))))))	GAGGAAAGAGCAAAAAUGCGAC&UUC-UAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7512_c0_g1_370_TPlot.pdf
TRINITY_DN7512_c0_g1:388	si_a628	TRINITY_DN7512_c0_g1	377	396	388	-27.10	-19.40	0.715867158671587	8.5	1-4,396-393;6-16,392-382	5-5,x-x[BULq];17-21,381-377[UP3]	.....(((((((((((-((((&)))).))))))))))).....	CGACCAGUCGACAUAG-ACGC&GCGUAUUAUGUCGAUUUUUUU	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN7512_c0_g1_388_TPlot.pdf
TRINITY_DN7512_c0_g1:413	si_a781	TRINITY_DN7512_c0_g1	402	432	413	-27.40	-18.00	0.656934306569343	23.5	1-7,432-426;8-19,415-404	x-x,425-416[BULt];20-21,403-402[UP3]	..((((((((((((..........(((((((&)))))))----------))))))))))))..	UAAGAGAAAUGGAAAGAAGAAAACGAGUUGA&UCAACUC----------UUCUAUUUUUCUAU	3	0.999999647774421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN7512_c0_g1_413_TPlot.pdf
TRINITY_DN7512_c0_g1:416	si_s77	TRINITY_DN7512_c0_g1	404	425	416	-25.50	-19.70	0.772549019607843	4.5	2-14,424-412;15-20,410-405	1-1,425-425[UP5];x-x,411-411[BULt];21-21,404-404[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	AGAGAAAUGGAAAGAAGAAAAC&UUUUUUUUCUUUCC-UUUCUUC	3	0.999999986191918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7512_c0_g1_416_TPlot.pdf
TRINITY_DN7512_c0_g1:417	si_s76	TRINITY_DN7512_c0_g1	405	426	417	-23.60	-19.50	0.826271186440678	5.5	3-15,424-412;16-21,410-405	1-2,426-425[UP5];x-x,411-411[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	GAGAAAUGGAAAGAAGAAAACG&AUUUUUUUUCUUUCC-UUUCUU	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7512_c0_g1_417_TPlot.pdf
TRINITY_DN7512_c0_g1:419	si_s74	TRINITY_DN7512_c0_g1	407	428	419	-25.00	-17.50	0.7	6	1-2,428-427;5-17,424-412;18-21,410-407	3-4,426-425[SIL];x-x,411-411[BULt]	((((.(((((((((((((..((&))..)))))))))))))-))))	GAAAUGGAAAGAAGAAAACGAG&CUAUUUUUUUUCUUUCC-UUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7512_c0_g1_419_TPlot.pdf
TRINITY_DN7512_c0_g1:53	si_a628	TRINITY_DN7512_c0_g1	42	63	53	-27.10	-18.20	0.671586715867159	10	1-5,63-59;6-19,57-44	x-x,58-58[BULt];20-21,43-42[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	GCGGAGAUUGAUGUGGUUACGC&GCGUA-UUAUGUCGAUUUUUUU	3	0.999993884044885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN7512_c0_g1_53_TPlot.pdf
TRINITY_DN7514_c0_g1:515	si_a314	TRINITY_DN7514_c0_g1	504	524	515	-27.10	-19.60	0.723247232472325	8.5	2-15,523-510	1-1,524-524[UP5];16-21,509-504[UP3]	......((((((((((((((.&.))))))))))))))......	GGUUGGUAUGGAUAGAUCCAU&UUGGAUUUAUCCAUGAUUUUU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN7514_c0_g1_515_TPlot.pdf
TRINITY_DN7515_c0_g1:2392	si_a32	TRINITY_DN7515_c0_g1	2374	2401	2392	-35.90	-23.80	0.662952646239554	15.5	4-17,2398-2385;18-21,2377-2374	1-3,2401-2399[UP5];x-x,2384-2378[BULt]	((((.......((((((((((((((...&...))))))))))))))-------))))	ACCUUAAGCACGCCGGUUUUAGGGCAUU&UUAGUUCUAAGACCGGU-------AGGU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a32_TRINITY_DN7515_c0_g1_2392_TPlot.pdf
TRINITY_DN7515_c0_g1:2681	si_s779	TRINITY_DN7515_c0_g1	2670	2690	2681	-29.30	-20.70	0.706484641638225	6.5	1-4,2690-2687;6-13,2685-2678;16-21,2675-2670	5-5,2686-2686[SIL];14-15,2677-2676[SIL]	((((((..((((((((.((((&)))).))))))))..))))))	AGUUUGGAUUGUAGCAUUGGU&ACUAUUGCUAUAAAACAAGCU	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s779_TRINITY_DN7515_c0_g1_2681_TPlot.pdf
TRINITY_DN7515_c0_g1:2917	si_s299	TRINITY_DN7515_c0_g1	2906	2926	2917	-30.00	-19.50	0.65	6	1-18,2926-2909	19-21,2908-2906[UP3]	...((((((((((((((((((&))))))))))))))))))...	GUUAUUUUCGUAAUUUUAAUC&GAUUGGAAUUGCGAAAAUUCU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s299_TRINITY_DN7515_c0_g1_2917_TPlot.pdf
TRINITY_DN7515_c0_g1:2918	si_s298	TRINITY_DN7515_c0_g1	2907	2927	2918	-30.80	-21.20	0.688311688311688	5	1-19,2927-2909	20-21,2908-2907[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUAUUUUCGUAAUUUUAAUCG&CGAUUGGAAUUGCGAAAAUUC	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN7515_c0_g1_2918_TPlot.pdf
TRINITY_DN7515_c0_g1:2919	si_s297	TRINITY_DN7515_c0_g1	2908	2928	2919	-29.80	-21.20	0.711409395973154	4.5	2-20,2927-2909	1-1,2928-2928[UP5];21-21,2908-2908[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UAUUUUCGUAAUUUUAAUCGU&UCGAUUGGAAUUGCGAAAAUU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN7515_c0_g1_2919_TPlot.pdf
TRINITY_DN7515_c0_g1:2920	si_s296	TRINITY_DN7515_c0_g1	2909	2929	2920	-31.60	-21.20	0.670886075949367	5.5	3-21,2927-2909	1-2,2929-2928[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	AUUUUCGUAAUUUUAAUCGUU&GUCGAUUGGAAUUGCGAAAAU	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN7515_c0_g1_2920_TPlot.pdf
TRINITY_DN7515_c0_g1:319	si_s12	TRINITY_DN7515_c0_g1	308	328	319	-22.80	-17.30	0.758771929824561	8	1-4,328-325;6-18,323-311	5-5,324-324[SIL];19-21,310-308[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	GGCCGAUGUAGUAGUAUUAGG&CUUAUUAUUACUAUAUUGAUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN7515_c0_g1_319_TPlot.pdf
TRINITY_DN7515_c0_g1:320	si_s11	TRINITY_DN7515_c0_g1	309	329	320	-23.60	-19.10	0.809322033898305	7	1-5,329-325;7-19,323-311	6-6,324-324[SIL];20-21,310-309[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	GCCGAUGUAGUAGUAUUAGGU&ACUUAUUAUUACUAUAUUGAU	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN7515_c0_g1_320_TPlot.pdf
TRINITY_DN7515_c0_g1:324	si_s7	TRINITY_DN7515_c0_g1	313	333	324	-21.70	-16.40	0.755760368663594	9	3-9,331-325;11-21,323-313	1-2,333-332[UP5];10-10,324-324[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AUGUAGUAGUAUUAGGUGGCG&UAUUACUUAUUAUUACUAUAU	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN7515_c0_g1_324_TPlot.pdf
TRINITY_DN7515_c0_g1:325	si_s6	TRINITY_DN7515_c0_g1	314	334	325	-21.70	-15.20	0.700460829493088	11	4-10,331-325;12-21,323-314	1-3,334-332[UP5];11-11,324-324[SIL]	((((((((((.(((((((...&...))))))).))))))))))	UGUAGUAGUAUUAGGUGGCGG&AUAUUACUUAUUAUUACUAUA	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN7515_c0_g1_325_TPlot.pdf
TRINITY_DN7515_c0_g1:546	si_s536	TRINITY_DN7515_c0_g1	535	555	546	-27.70	-19.20	0.693140794223827	8	1-4,555-552;6-16,550-540	5-5,551-551[SIL];17-21,539-535[UP3]	.....(((((((((((.((((&)))).))))))))))).....	AUCCCGGUUGGAUCAAUAAUG&CAUUUUUGAUCCGAUCAAAAU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN7515_c0_g1_546_TPlot.pdf
TRINITY_DN7515_c0_g1:549	si_s533	TRINITY_DN7515_c0_g1	538	558	549	-28.80	-19.40	0.673611111111111	9	3-7,556-552;9-19,550-540	1-2,558-557[UP5];8-8,551-551[SIL];20-21,539-538[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	CCGGUUGGAUCAAUAAUGGCG&AAUCAUUUUUGAUCCGAUCAA	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN7515_c0_g1_549_TPlot.pdf
TRINITY_DN7515_c0_g1:550	si_s532	TRINITY_DN7515_c0_g1	539	559	550	-28.70	-19.40	0.67595818815331	10	4-8,556-552;10-20,550-540	1-3,559-557[UP5];9-9,551-551[SIL];21-21,539-539[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CGGUUGGAUCAAUAAUGGCGG&AAAUCAUUUUUGAUCCGAUCA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN7515_c0_g1_550_TPlot.pdf
TRINITY_DN7523_c0_g1:581	si_a407	TRINITY_DN7523_c0_g1	570	590	581	-19.80	-16.30	0.823232323232323	9.5	2-17,589-574	1-1,590-590[UP5];18-21,573-570[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUAAAAAUGUGAGCAAGGCAG&UUGUUUUGUUUAUAUUUAAAU	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN7523_c0_g1_581_TPlot.pdf
TRINITY_DN7523_c0_g1:584	si_a404	TRINITY_DN7523_c0_g1	573	593	584	-21.70	-16.30	0.751152073732719	12	5-20,589-574	1-4,593-590[UP5];21-21,573-573[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAAUGUGAGCAAGGCAGAGU&GAAUUGUUUUGUUUAUAUUUA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN7523_c0_g1_584_TPlot.pdf
TRINITY_DN752_c0_g1:382	si_a404	TRINITY_DN752_c0_g1	371	391	382	-21.70	-14.20	0.654377880184332	8	2-15,390-377	1-1,391-391[UP5];16-21,376-371[UP3]	......((((((((((((((.&.))))))))))))))......	UAUCGCUAAACAAAGCAAUUG&GAAUUGUUUUGUUUAUAUUUA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN752_c0_g1_382_TPlot.pdf
TRINITY_DN752_c0_g1:707	si_a67	TRINITY_DN752_c0_g1	691	716	707	-27.20	-18.40	0.676470588235294	17	1-10,716-707;13-21,699-691	11-12,706-700[AILt]	(((((((((.......((((((((((&))))))))))-----..)))))))))	GGAGAGCAAAGAAGGGUGGAAGAAGU&GCUUCUUUCA-----AAUUGUUUUUC	4	0.999999994461891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN752_c0_g1_707_TPlot.pdf
TRINITY_DN7530_c0_g1:1353	si_s366	TRINITY_DN7530_c0_g1	1343	1361	1353	-39.70	-26.50	0.667506297229219	5	1-3,1361-1359;5-12,1358-1351;14-21,1350-1343	4-4,x-x[BULq];13-13,x-x[BULq]	((((((((-((((((((-(((&))).)))))))).))))))))	AUGUGAGC-AUCGGUUC-GUC&GAUUGAACCGAUCGCUCGCGU	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s366_TRINITY_DN7530_c0_g1_1353_TPlot.pdf
TRINITY_DN7531_c0_g1:2322	si_a894	TRINITY_DN7531_c0_g1	2311	2331	2322	-21.70	-15.60	0.71889400921659	8.5	1-16,2331-2316	17-21,2315-2311[UP3]	.....((((((((((((((((&)))))))))))))))).....	CACUCGCUUAUUGUUAUUGUA&UAUAGUAAUAAUAAGUAAUAU	4	0.812134891451853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN7531_c0_g1_2322_TPlot.pdf
TRINITY_DN7531_c0_g1:627	si_a636	TRINITY_DN7531_c0_g1	617	636	627	-26.30	-18.50	0.703422053231939	7.5	1-14,636-623;16-17,622-621	15-15,x-x[BULq];18-21,620-617[UP3]	....((-((((((((((((((&)))))))))))))).))....	UCAGAC-CGAAGAGAUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN7531_c0_g1_627_TPlot.pdf
TRINITY_DN7533_c0_g1:245	si_a795	TRINITY_DN7533_c0_g1	235	254	245	-30.20	-19.80	0.655629139072848	7.5	1-12,254-243;15-18,241-238	13-14,242-242[AILq];19-21,237-235[UP3]	...((((.-((((((((((((&))))))))))))..))))...	UGGCGGAG-GGAAAGUAGGAG&UUUCUAUUUUCCAAUCCGAAG	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a795_TRINITY_DN7533_c0_g1_245_TPlot.pdf
TRINITY_DN7533_c0_g1:248	si_a792	TRINITY_DN7533_c0_g1	238	257	248	-27.60	-21.40	0.77536231884058	7	2-15,256-243;18-21,241-238	1-1,257-257[UP5];16-17,242-242[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	CGGAG-GGAAAGUAGGAGGAC&AUUUUUCUAUUUUCCAAUCCG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN7533_c0_g1_248_TPlot.pdf
TRINITY_DN7533_c0_g1:250	si_s66	TRINITY_DN7533_c0_g1	239	259	250	-26.30	-17.10	0.650190114068441	13	6-21,254-239	1-5,259-255[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGGGAAAGUAGGAGGACAU&AGCAACUUCUAUUUUUUUUCU	3	0.999999999967537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN7533_c0_g1_250_TPlot.pdf
TRINITY_DN7533_c0_g1:284	si_s795	TRINITY_DN7533_c0_g1	273	293	284	-30.30	-20.30	0.66996699669967	9.5	2-6,292-288;8-8,286-286;10-20,284-274	1-1,293-293[UP5];7-7,287-287[SIL];9-9,285-285[SIL];21-21,273-273[UP3]	.(((((((((((.(.(((((.&.))))).).))))))))))).	UCGGAGGUGAGGCAGGAGCUG&AAGCUCGUAUUUUAUCUUCGU	2	0.995656031900421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN7533_c0_g1_284_TPlot.pdf
TRINITY_DN7533_c0_g1:313	si_s89	TRINITY_DN7533_c0_g1	299	322	313	-35.30	-23.60	0.668555240793201	9.5	2-15,321-308;16-20,304-300	1-1,322-322[UP5];x-x,307-305[BULt];21-21,299-299[UP3]	.(((((...((((((((((((((.&.))))))))))))))---))))).	GGAGGUCAUGGAGAAGGAGGAGGA&CCUUUCUUCUUCUUC---GCUUCG	3	0.999999999999916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7533_c0_g1_313_TPlot.pdf
TRINITY_DN753_c0_g1:3189	si_a308	TRINITY_DN753_c0_g1	3178	3199	3189	-32.70	-22.50	0.688073394495413	7	1-5,3199-3195;6-8,3193-3191;10-19,3189-3180	x-x,3194-3194[BULt];9-9,3190-3190[SIL];20-21,3179-3178[UP3]	..((((((((((.(((.(((((&)))))-))).))))))))))..	UUUGGAUGGAUCGAAGUCGAAU&AUUCG-CUUGGAUUUAUCCAUG	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN753_c0_g1_3189_TPlot.pdf
TRINITY_DN753_c0_g1:3190	si_a307	TRINITY_DN753_c0_g1	3179	3200	3190	-33.00	-22.80	0.690909090909091	7	2-6,3199-3195;7-9,3193-3191;11-20,3189-3180	1-1,3200-3200[UP5];x-x,3194-3194[BULt];10-10,3190-3190[SIL];21-21,3179-3179[UP3]	.((((((((((.(((.(((((.&.)))))-))).)))))))))).	UUGGAUGGAUCGAAGUCGAAUA&GAUUCG-CUUGGAUUUAUCCAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a307_TRINITY_DN753_c0_g1_3190_TPlot.pdf
TRINITY_DN753_c0_g1:3643	si_a784	TRINITY_DN753_c0_g1	3632	3653	3643	-24.70	-17.20	0.696356275303644	7.5	2-8,3652-3646;10-21,3643-3632	1-1,3653-3653[UP5];9-9,3645-3644[AILt]	((((((((((((..(((((((.&.)))))))-.))))))))))))	AAAAUGGAAAAGAAAGAAGGGC&ACUCUUCU-AUUUUUCUAUUUU	4	0.999999999899033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN753_c0_g1_3643_TPlot.pdf
TRINITY_DN753_c0_g1:4075	si_a193	TRINITY_DN753_c0_g1	4064	4087	4075	-30.90	-20.50	0.663430420711974	11	1-6,4087-4082;7-8,4080-4079;9-18,4076-4067	x-x,4081-4081[BULt];x-x,4078-4077[BULt];19-21,4066-4064[UP3]	...((((((((((..((.((((((&))))))-))--))))))))))...	AAGGUUGGUGGACAUAGUGGAAAG&CUUUCC-CU--GUUCACUAAUAAA	4	0.999256530861528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN753_c0_g1_4075_TPlot.pdf
TRINITY_DN753_c0_g1:4126	si_s306	TRINITY_DN753_c0_g1	4115	4133	4126	-32.30	-22.00	0.681114551083591	9	2-7,4132-4127;10-20,4126-4116	1-1,4133-4133[UP5];8-9,x-x[BULq];21-21,4115-4115[UP3]	.(((((((((((--((((((.&.))))))..))))))))))).	AAAGGACAGGGU--UCGCGAA&AUUGCGAAAAUUCUGUCCUUC	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN753_c0_g1_4126_TPlot.pdf
TRINITY_DN753_c0_g1:4256	si_s82	TRINITY_DN753_c0_g1	4245	4266	4256	-28.90	-19.00	0.657439446366782	5.5	1-7,4266-4260;8-12,4258-4254;14-21,4252-4245	x-x,4259-4259[BULt];13-13,4253-4253[SIL]	((((((((.(((((.(((((((&)))))))-))))).))))))))	AAGAAGGAAAAGGGCAAGGAAA&UUUCUUU-CCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN753_c0_g1_4256_TPlot.pdf
TRINITY_DN753_c0_g1:4261	si_s78	TRINITY_DN753_c0_g1	4246	4270	4261	-26.20	-18.00	0.687022900763359	8	1-11,4270-4260;12-14,4258-4256;15-21,4252-4246	x-x,4259-4259[BULt];x-x,4255-4253[BULt]	(((((((...(((.(((((((((((&)))))))))))-)))---)))))))	AGAAGGAAAAGGGCAAGGAAAAGAA&UUUUUUUCUUU-CCU---UUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN753_c0_g1_4261_TPlot.pdf
TRINITY_DN753_c0_g1:4262	si_s77	TRINITY_DN753_c0_g1	4247	4271	4262	-25.50	-17.60	0.690196078431373	8	1-12,4271-4260;13-15,4258-4256;16-21,4252-4247	x-x,4259-4259[BULt];x-x,4255-4253[BULt]	((((((...(((.((((((((((((&))))))))))))-)))---))))))	GAAGGAAAAGGGCAAGGAAAAGAAA&UUUUUUUUCUUU-CCU---UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN753_c0_g1_4262_TPlot.pdf
TRINITY_DN753_c0_g1:4268	si_a327	TRINITY_DN753_c0_g1	4256	4277	4268	-28.40	-23.00	0.809859154929577	7.5	2-10,4276-4268;12-21,4265-4256	1-1,4277-4277[UP5];11-11,4267-4266[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	GGGCAAGGAAAAGAAAAAGUCG&UGAUUUUUUU-AUUCCUUGUCC	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN753_c0_g1_4268_TPlot.pdf
TRINITY_DN753_c0_g1:4484	si_s700	TRINITY_DN753_c0_g1	4474	4493	4484	-29.20	-19.30	0.660958904109589	6.5	1-12,4493-4482;14-19,4481-4476	13-13,x-x[BULq];20-21,4475-4474[UP3]	..((((((-((((((((((((&)))))))))))).))))))..	AUUUCGCU-GUGAAUUGACUA&UAGUCGAUUUAUUAGUGAACA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN753_c0_g1_4484_TPlot.pdf
TRINITY_DN753_c0_g1:4559	si_s823	TRINITY_DN753_c0_g1	4548	4567	4559	-22.20	-14.70	0.662162162162162	5	1-5,4567-4563;7-19,4562-4550	6-6,x-x[BULq];20-21,4549-4548[UP3]	..(((((((((((((-(((((&))))).)))))))))))))..	UUUUGUUUUUUAUUA-UAAGA&UCUUAAUAAUGAAAAACAAUU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN753_c0_g1_4559_TPlot.pdf
TRINITY_DN753_c0_g1:4561	si_s821	TRINITY_DN753_c0_g1	4550	4569	4561	-22.20	-14.70	0.662162162162162	5.5	3-7,4567-4563;9-21,4562-4550	1-2,4569-4568[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	UUGUUUUUUAUUA-UAAGACA&UUUCUUAAUAAUGAAAAACAA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s821_TRINITY_DN753_c0_g1_4561_TPlot.pdf
TRINITY_DN7542_c0_g1:1874	si_s207	TRINITY_DN7542_c0_g1	1863	1886	1874	-33.00	-23.14	0.701212121212121	12.5	1-7,1886-1880;9-19,1875-1865	8-8,1879-1876[AILt];20-21,1864-1863[UP3]	..(((((((((((....(((((((&)))))))---.)))))))))))..	ACUCGAGCACAAUAGAAGGUGCAU&AUGUACC---AGUUGUGUUCGAAA	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s207_TRINITY_DN7542_c0_g1_1874_TPlot.pdf
TRINITY_DN7542_c0_g1:1875	si_s206	TRINITY_DN7542_c0_g1	1864	1887	1875	-33.00	-24.34	0.737575757575758	11.5	1-8,1887-1880;10-20,1875-1865	9-9,1879-1876[AILt];21-21,1864-1864[UP3]	.(((((((((((....((((((((&))))))))---.))))))))))).	CUCGAGCACAAUAGAAGGUGCAUU&AAUGUACC---AGUUGUGUUCGAA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN7542_c0_g1_1875_TPlot.pdf
TRINITY_DN7542_c0_g1:1876	si_s205	TRINITY_DN7542_c0_g1	1865	1888	1876	-34.90	-24.34	0.697421203438395	11.5	2-9,1887-1880;11-21,1875-1865	1-1,1888-1888[UP5];10-10,1879-1876[AILt]	(((((((((((....((((((((.&.))))))))---.)))))))))))	UCGAGCACAAUAGAAGGUGCAUUA&GAAUGUACC---AGUUGUGUUCGA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN7542_c0_g1_1876_TPlot.pdf
TRINITY_DN7542_c0_g1:2279	si_a410	TRINITY_DN7542_c0_g1	2268	2288	2279	-17.80	-12.20	0.685393258426966	8	1-14,2288-2275;17-18,2272-2271	15-16,2274-2273[SIL];19-21,2270-2268[UP3]	...((..((((((((((((((&))))))))))))))..))...	AUAAUGGAAAUAUGGACAGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999998448973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7542_c0_g1_2279_TPlot.pdf
TRINITY_DN7542_c0_g1:382	si_a784	TRINITY_DN7542_c0_g1	368	391	382	-24.70	-16.10	0.651821862348178	13	2-10,390-382;14-21,375-368	1-1,391-391[UP5];11-13,381-376[AILt]	((((((((......(((((((((.&.)))))))))---...))))))))	AAAGUAGGUAUCCUAUAGAAGAGA&ACUCUUCUAU---UUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7542_c0_g1_382_TPlot.pdf
TRINITY_DN7549_c0_g1:203	si_a20	TRINITY_DN7549_c0_g1	192	210	203	-26.70	-17.80	0.666666666666667	9.5	1-8,210-203;11-17,202-196;19-21,194-192	9-10,x-x[BULq];18-18,195-195[SIL]	(((.(((((((--((((((((&))))))))..))))))).)))	UGGUGCUAGAA--GAGUGGGC&GCCUAUUUAUUUUUAGUUCUA	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7549_c0_g1_203_TPlot.pdf
TRINITY_DN7549_c0_g1:210	si_s78	TRINITY_DN7549_c0_g1	199	219	210	-26.20	-18.20	0.694656488549618	7.5	1-9,219-211;11-13,209-207;15-21,205-199	10-10,210-210[SIL];14-14,206-206[SIL]	(((((((.(((.(((((((((&))))))))).))).)))))))	AGAAGAGUGGGCAGAAGGAGA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7549_c0_g1_210_TPlot.pdf
TRINITY_DN7549_c0_g1:211	si_s77	TRINITY_DN7549_c0_g1	200	220	211	-25.50	-17.80	0.698039215686275	7.5	1-10,220-211;12-14,209-207;16-21,205-200	11-11,210-210[SIL];15-15,206-206[SIL]	((((((.(((.((((((((((&)))))))))).))).))))))	GAAGAGUGGGCAGAAGGAGAA&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7549_c0_g1_211_TPlot.pdf
TRINITY_DN7549_c0_g1:212	si_s76	TRINITY_DN7549_c0_g1	201	221	212	-23.60	-15.90	0.673728813559322	7	1-11,221-211;13-15,209-207;17-21,205-201	12-12,210-210[SIL];16-16,206-206[SIL]	(((((.(((.(((((((((((&))))))))))).))).)))))	AAGAGUGGGCAGAAGGAGAAU&AUUUUUUUUCUUUCCUUUCUU	0	0.934033884438176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7549_c0_g1_212_TPlot.pdf
TRINITY_DN7549_c0_g1:213	si_s75	TRINITY_DN7549_c0_g1	202	222	213	-24.00	-16.10	0.670833333333333	6	1-12,222-211;14-16,209-207;18-21,205-202	13-13,210-210[SIL];17-17,206-206[SIL]	((((.(((.((((((((((((&)))))))))))).))).))))	AGAGUGGGCAGAAGGAGAAUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7549_c0_g1_213_TPlot.pdf
TRINITY_DN7549_c0_g1:76	si_s78	TRINITY_DN7549_c0_g1	64	85	76	-26.20	-21.80	0.83206106870229	4	2-14,84-72;15-21,70-64	1-1,85-85[UP5];x-x,71-71[BULt]	(((((((.(((((((((((((.&.)))))))))))))-)))))))	AGAAGGAUGGGAAAGGAAAAAG&UUUUUUUCUUUCCU-UUCUUCU	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7549_c0_g1_76_TPlot.pdf
TRINITY_DN7549_c0_g1:77	si_s77	TRINITY_DN7549_c0_g1	65	86	77	-25.50	-22.20	0.870588235294118	4	1-15,86-72;16-21,70-65	x-x,71-71[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	GAAGGAUGGGAAAGGAAAAAGA&UUUUUUUUCUUUCCU-UUCUUC	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7549_c0_g1_77_TPlot.pdf
TRINITY_DN7549_c0_g1:80	si_s74	TRINITY_DN7549_c0_g1	69	89	80	-25.00	-18.00	0.72	8.5	4-18,86-72;20-21,70-69	1-3,89-87[UP5];19-19,71-71[SIL]	((.(((((((((((((((...&...))))))))))))))).))	GAUGGGAAAGGAAAAAGAAGU&CUAUUUUUUUUCUUUCCUUUC	2	0.999999267189669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7549_c0_g1_80_TPlot.pdf
TRINITY_DN754_c0_g1:600	si_a897	TRINITY_DN754_c0_g1	589	609	600	-21.20	-16.40	0.773584905660377	8.5	2-6,608-604;8-19,602-591	1-1,609-609[UP5];7-7,603-603[SIL];20-21,590-589[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	GCUAUAUUGCUUGUAGUUGCA&AGUAAUAAUAAGUAAUAUAAA	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN754_c0_g1_600_TPlot.pdf
TRINITY_DN754_c0_g1:603	si_a894	TRINITY_DN754_c0_g1	592	612	603	-21.70	-14.60	0.672811059907834	12.5	5-9,608-604;11-21,602-592	1-4,612-609[UP5];10-10,603-603[SIL]	(((((((((((.(((((....&....))))).)))))))))))	AUAUUGCUUGUAGUUGCAGAG&UAUAGUAAUAAUAAGUAAUAU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN754_c0_g1_603_TPlot.pdf
TRINITY_DN7550_c0_g1:1464	si_s54	TRINITY_DN7550_c0_g1	1453	1473	1464	-32.50	-21.60	0.664615384615385	10	1-2,1473-1472;5-16,1469-1458	3-4,1471-1470[SIL];17-21,1457-1453[UP3]	.....((((((((((((..((&))..)))))))))))).....	AUUCAUGCUAGCUUGAAUGCC&GGAUUUCAAGUUAGCAACUUC	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s54_TRINITY_DN7550_c0_g1_1464_TPlot.pdf
TRINITY_DN7550_c0_g1:2291	si_a764	TRINITY_DN7550_c0_g1	2281	2300	2291	-28.90	-20.40	0.705882352941176	6	2-15,2299-2286;17-20,2285-2282	1-1,2300-2300[UP5];16-16,x-x[BULq];21-21,2281-2281[UP3]	.((((-((((((((((((((.&.)))))))))))))).)))).	AUGGA-CGAUCAAGAACCUAU&UUGGGUUUUUGAUUGAUUCAA	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN7550_c0_g1_2291_TPlot.pdf
TRINITY_DN7552_c0_g2:2614	si_a240	TRINITY_DN7552_c0_g2	2602	2623	2614	-35.00	-22.80	0.651428571428571	8	3-8,2621-2616;10-16,2614-2608;17-19,2606-2604	1-2,2623-2622[UP5];9-9,2615-2615[SIL];x-x,2607-2607[BULt];20-21,2603-2602[UP3]	..(((.(((((((.((((((..&..)))))).)))))))-)))..	UCUCGUGGGGAUCUAAUUGAAA&AAUCAAUUCGAUCCCC-CGAUU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a240_TRINITY_DN7552_c0_g2_2614_TPlot.pdf
TRINITY_DN7554_c0_g1:1853	si_s19	TRINITY_DN7554_c0_g1	1842	1862	1853	-27.80	-18.30	0.658273381294964	13.5	8-21,1855-1842	1-7,1862-1856[UP5]	((((((((((((((.......&.......))))))))))))))	UGGUUGCAAUCAAUCUGUCGA&UUACUAUAUUGAUUGCAACUA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN7554_c0_g1_1853_TPlot.pdf
TRINITY_DN7554_c0_g1:2295	si_a898	TRINITY_DN7554_c0_g1	2284	2304	2295	-20.50	-14.20	0.692682926829268	10	1-13,2304-2292	14-21,2291-2284[UP3]	........(((((((((((((&)))))))))))))........	GUUCAAAAUACUUGUUGUUAC&GUAAUAAUAAGUAAUAUAAAA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN7554_c0_g1_2295_TPlot.pdf
TRINITY_DN7554_c0_g1:2296	si_a897	TRINITY_DN7554_c0_g1	2285	2305	2296	-21.20	-14.30	0.674528301886792	10	2-14,2304-2292	1-1,2305-2305[UP5];15-21,2291-2285[UP3]	.......(((((((((((((.&.))))))))))))).......	UUCAAAAUACUUGUUGUUACA&AGUAAUAAUAAGUAAUAUAAA	2	0.866849619748692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN7554_c0_g1_2296_TPlot.pdf
TRINITY_DN7554_c0_g1:716	si_a191	TRINITY_DN7554_c0_g1	705	725	716	-32.00	-22.00	0.6875	8	2-4,724-722;6-11,720-715;14-21,712-705	1-1,725-725[UP5];5-5,721-721[SIL];12-13,714-713[SIL]	((((((((..((((((.(((.&.))).))))))..))))))))	UGUUGGUGUCCAGGGGUAGAA&AUCUUUCCCUGUUCACUAAUA	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN7554_c0_g1_716_TPlot.pdf
TRINITY_DN7556_c0_g2:154	si_s876	TRINITY_DN7556_c0_g2	143	163	154	-24.20	-15.80	0.652892561983471	6.5	1-13,163-151;15-17,149-147	14-14,150-150[SIL];18-21,146-143[UP3]	....(((.(((((((((((((&))))))))))))).)))....	AAUAGUUGUUAGUUUUAAGAC&GUCUUAGAACUAAAAAUAAAU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN7556_c0_g2_154_TPlot.pdf
TRINITY_DN7556_c0_g3:761	si_s92	TRINITY_DN7556_c0_g3	750	770	761	-34.90	-23.90	0.684813753581662	3.5	1-12,770-759;13-16,757-754;18-21,753-750	x-x,758-758[BULt];17-17,x-x[BULq]	((((-((((.((((((((((((&))))))))))))-)))).))))	AUCC-AAGUAGAAGAAGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	1	0.189957421909534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN7556_c0_g3_761_TPlot.pdf
TRINITY_DN7556_c0_g3:765	si_a783	TRINITY_DN7556_c0_g3	754	775	765	-24.70	-19.40	0.785425101214575	8	3-9,773-767;11-21,764-754	1-2,775-774[UP5];10-10,766-765[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	AAGUAGAAGAAGAAGAAGAGGU&AACUCUUCU-AUUUUUCUAUUU	1	0.0379454751443316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7556_c0_g3_765_TPlot.pdf
TRINITY_DN7564_c0_g1:226	si_a315	TRINITY_DN7564_c0_g1	215	235	226	-27.00	-19.30	0.714814814814815	9	1-4,235-232;7-16,229-220	5-6,231-230[SIL];17-21,219-215[UP3]	.....((((((((((..((((&))))..)))))))))).....	AAGCCAUCAUGGAUACUUCCA&UGGAUUUAUCCAUGAUUUUUU	4	0.99132875219876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN7564_c0_g1_226_TPlot.pdf
TRINITY_DN7568_c0_g2:583	si_a645	TRINITY_DN7568_c0_g2	572	592	583	-29.40	-21.90	0.744897959183673	6	1-17,592-576	18-21,575-572[UP3]	....(((((((((((((((((&)))))))))))))))))....	GGAACGAUAUAUUACUCAGGA&UUUUGAGUAAUAUAUCGGGAA	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a645_TRINITY_DN7568_c0_g2_583_TPlot.pdf
TRINITY_DN756_c0_g1:1193	si_a405	TRINITY_DN756_c0_g1	1181	1202	1193	-19.80	-13.80	0.696969696969697	7.5	1-14,1202-1189;15-19,1187-1183	x-x,1188-1188[BULt];20-21,1182-1181[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	UGGAAUGUUGGAUAAAGCAAUU&AAUUGUUUUGUUUA-UAUUUAA	4	0.999999999999861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN756_c0_g1_1193_TPlot.pdf
TRINITY_DN756_c0_g1:1776	si_a24	TRINITY_DN756_c0_g1	1763	1785	1776	-24.20	-17.10	0.706611570247934	10	4-18,1782-1768;19-21,1765-1763	1-3,1785-1783[UP5];x-x,1767-1766[BULt]	(((..(((((((((((((((...&...)))))))))))))))--)))	GUCCAUUGGAGCUGAAAAUGCAA&AUUUAUUUUUAGUUCUAA--GAC	2	0.882431907103998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN756_c0_g1_1776_TPlot.pdf
TRINITY_DN756_c0_g1:1777	si_a23	TRINITY_DN756_c0_g1	1766	1787	1777	-22.80	-15.80	0.692982456140351	7	1-4,1787-1784;5-19,1782-1768	x-x,1783-1783[BULt];20-21,1767-1766[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	CAUUGGAGCUGAAAAUGCAAUA&UAUU-UAUUUUUAGUUCUAAGA	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN756_c0_g1_1777_TPlot.pdf
TRINITY_DN756_c0_g1:1779	si_a21	TRINITY_DN756_c0_g1	1768	1789	1779	-24.30	-15.80	0.650205761316872	7.5	3-6,1787-1784;7-21,1782-1768	1-2,1789-1788[UP5];x-x,1783-1783[BULt]	(((((((((((((((.((((..&..))))-)))))))))))))))	UUGGAGCUGAAAAUGCAAUAUC&CCUAUU-UAUUUUUAGUUCUAA	2	0.999994069641677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN756_c0_g1_1779_TPlot.pdf
TRINITY_DN756_c0_g1:2331	si_a630	TRINITY_DN756_c0_g1	2320	2342	2331	-25.80	-16.78	0.650387596899225	12	1-4,2342-2339;7-19,2334-2322	5-6,2338-2335[AILt];20-21,2321-2320[UP3]	..(((((((((((((....((((&))))--..)))))))))))))..	AAAAGAAGAUCGACAGCGCAUGC&GUAU--UAUGUCGAUUUUUUUGA	3	0.999999998248662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN756_c0_g1_2331_TPlot.pdf
TRINITY_DN756_c0_g1:3145	si_s777	TRINITY_DN756_c0_g1	3135	3154	3145	-26.60	-18.40	0.691729323308271	5.5	1-11,3154-3144;13-21,3143-3135	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	UUUGUUUUA-GGUAAUAGUGA&UUACUAUUGCUAUAAAACAAG	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s777_TRINITY_DN756_c0_g1_3145_TPlot.pdf
TRINITY_DN756_c0_g1:3146	si_s776	TRINITY_DN756_c0_g1	3136	3155	3146	-25.10	-17.90	0.713147410358566	5	2-12,3154-3144;14-21,3143-3136	1-1,3155-3155[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	UUGUUUUA-GGUAAUAGUGAA&AUUACUAUUGCUAUAAAACAA	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN756_c0_g1_3146_TPlot.pdf
TRINITY_DN756_c0_g1:3147	si_s775	TRINITY_DN756_c0_g1	3137	3156	3147	-25.00	-17.00	0.68	6.5	3-13,3154-3144;15-21,3143-3137	1-2,3156-3155[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	UGUUUUA-GGUAAUAGUGAAU&AAUUACUAUUGCUAUAAAACA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN756_c0_g1_3147_TPlot.pdf
TRINITY_DN756_c0_g1:900	si_s83	TRINITY_DN756_c0_g1	889	910	900	-30.90	-22.20	0.718446601941748	7	1-9,910-902;11-20,899-890	10-10,901-900[AILt];21-21,889-889[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	UAGGAGGAAGGCCAGGAAAGAA&UUCUUUCCU-UUCUUCUUCUUC	3	0.99999999998043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN756_c0_g1_900_TPlot.pdf
TRINITY_DN756_c0_g1:902	si_s82	TRINITY_DN756_c0_g1	890	911	902	-28.90	-22.60	0.782006920415225	6.5	1-10,911-902;12-21,899-890	11-11,901-900[AILt]	((((((((((..((((((((((&))))))))))-.))))))))))	AGGAGGAAGGCCAGGAAAGAAG&UUUCUUUCCU-UUCUUCUUCUU	3	0.999962937540519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN756_c0_g1_902_TPlot.pdf
TRINITY_DN756_c0_g1:903	si_s81	TRINITY_DN756_c0_g1	891	912	903	-28.90	-22.50	0.778546712802768	7	1-11,912-902;13-21,899-891	12-12,901-900[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	GGAGGAAGGCCAGGAAAGAAGG&UUUUCUUUCCU-UUCUUCUUCU	3	0.999986800648898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN756_c0_g1_903_TPlot.pdf
TRINITY_DN756_c0_g1:906	si_s78	TRINITY_DN756_c0_g1	891	915	906	-26.20	-20.70	0.790076335877863	8	1-14,915-902;15-21,897-891	x-x,901-898[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	GGAGGAAGGCCAGGAAAGAAGGGAA&UUUUUUUCUUUCCU----UUCUUCU	3	0.999998031553349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN756_c0_g1_906_TPlot.pdf
TRINITY_DN756_c0_g1:907	si_s77	TRINITY_DN756_c0_g1	892	916	907	-25.50	-19.80	0.776470588235294	8.5	2-15,915-902;16-21,897-892	1-1,916-916[UP5];x-x,901-898[BULt]	((((((....((((((((((((((.&.))))))))))))))----))))))	GAGGAAGGCCAGGAAAGAAGGGAAU&UUUUUUUUCUUUCCU----UUCUUC	2	0.999975493323183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN756_c0_g1_907_TPlot.pdf
TRINITY_DN756_c0_g1:909	si_s75	TRINITY_DN756_c0_g1	894	918	909	-24.00	-15.80	0.658333333333333	12.5	4-17,915-902;18-21,897-894	1-3,918-916[UP5];x-x,901-898[BULt]	((((....((((((((((((((...&...))))))))))))))----))))	GGAAGGCCAGGAAAGAAGGGAAUAU&UAUUUUUUUUCUUUCCU----UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN756_c0_g1_909_TPlot.pdf
TRINITY_DN7573_c0_g1:1181	si_s297	TRINITY_DN7573_c0_g1	1170	1190	1181	-29.80	-21.90	0.73489932885906	9.5	1-2,1190-1189;4-16,1187-1175	3-3,1188-1188[SIL];17-21,1174-1170[UP3]	.....(((((((((((((.((&)).))))))))))))).....	AACGAUCGCAGUUCCGAUGGG&UCGAUUGGAAUUGCGAAAAUU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s297_TRINITY_DN7573_c0_g1_1181_TPlot.pdf
TRINITY_DN7573_c0_g1:1402	si_a562	TRINITY_DN7573_c0_g1	1392	1411	1402	-35.60	-24.40	0.685393258426966	8.5	2-12,1410-1400;16-19,1397-1394	1-1,1411-1411[UP5];13-15,1399-1398[AILq];20-21,1393-1392[UP3]	..((((..-(((((((((((.&.)))))))))))...))))..	CGGCGAAG-GCGGGGAGAUGU&UUAUCUCCCCGUGAAUCGUAU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a562_TRINITY_DN7573_c0_g1_1402_TPlot.pdf
TRINITY_DN7573_c0_g1:1787	si_a663	TRINITY_DN7573_c0_g1	1776	1796	1787	-31.40	-20.80	0.662420382165605	9	3-13,1794-1784;16-20,1781-1777	1-2,1796-1795[UP5];14-15,1783-1782[SIL];21-21,1776-1776[UP3]	.(((((..(((((((((((..&..)))))))))))..))))).	GAAGGAGGCGAUGGGUAUUAC&GAAAUGCCUAUUGAUUCCUUA	2	0.928537579334981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a663_TRINITY_DN7573_c0_g1_1787_TPlot.pdf
TRINITY_DN7573_c0_g1:2102	si_a499	TRINITY_DN7573_c0_g1	2090	2111	2102	-35.20	-25.10	0.713068181818182	7	1-13,2111-2099;14-17,2097-2094;19-20,2092-2091	x-x,2098-2098[BULt];18-18,2093-2093[SIL];21-21,2090-2090[UP3]	.((.((((.(((((((((((((&)))))))))))))-)))).)).	ACGCGGAGUGGCGGAAGACGAC&GUCGUUUUUCGUC-UUCCUUGG	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN7573_c0_g1_2102_TPlot.pdf
TRINITY_DN7573_c0_g1:2671	si_s73	TRINITY_DN7573_c0_g1	2660	2681	2671	-24.00	-15.80	0.658333333333333	10.5	1-3,2681-2679;4-10,2677-2671;12-19,2669-2662	x-x,2678-2678[BULt];11-11,2670-2670[SIL];20-21,2661-2660[UP3]	..((((((((.(((((((.(((&)))-))))))).))))))))..	GCGGGAAAGGUGAAGAGUCAGA&UCU-AUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7573_c0_g1_2671_TPlot.pdf
TRINITY_DN7573_c0_g1:3312	si_s378	TRINITY_DN7573_c0_g1	3301	3325	3312	-43.80	-30.00	0.684931506849315	16.5	1-4,3325-3322;5-7,3317-3315;9-18,3313-3304	x-x,3321-3318[BULt];8-8,3314-3314[SIL];19-21,3303-3301[UP3]	...((((((((((.(((....((((&))))----))).))))))))))...	GAAGAGGCGGGCGGGCGGUACGGCG&CGCU----CGCGUGUCCGCCUUACA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s378_TRINITY_DN7573_c0_g1_3312_TPlot.pdf
TRINITY_DN7573_c0_g1:5373	si_a276	TRINITY_DN7573_c0_g1	5362	5385	5373	-37.90	-27.30	0.720316622691293	14	1-9,5385-5377;13-21,5370-5362	10-12,5376-5371[AILt]	(((((((((......(((((((((&)))))))))---...)))))))))	CCAAGCGAUGAACGCUUUGUGGGC&GCCUACGAA---AAGAUCGCUUGG	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN7573_c0_g1_5373_TPlot.pdf
TRINITY_DN7573_c0_g1:5377	si_a275	TRINITY_DN7573_c0_g1	5363	5386	5377	-37.00	-25.30	0.683783783783784	13	1-10,5386-5377;14-21,5370-5363	11-13,5376-5371[AILt]	((((((((......((((((((((&))))))))))---...))))))))	CAAGCGAUGAACGCUUUGUGGGCG&CGCCUACGAA---AAGAUCGCUUG	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a275_TRINITY_DN7573_c0_g1_5377_TPlot.pdf
TRINITY_DN7573_c0_g1:5657	si_s53	TRINITY_DN7573_c0_g1	5645	5667	5657	-31.20	-20.70	0.663461538461538	9	1-3,5667-5665;5-13,5662-5654;14-21,5652-5645	4-4,5664-5663[AILt];x-x,5653-5653[BULt]	((((((((.(((((((((..(((&)))-.)))))))))-))))))))	AGGUUGCUCGGCUUGGAGCACCA&UGG-AUUUCAAGUU-AGCAACUU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN7573_c0_g1_5657_TPlot.pdf
TRINITY_DN7573_c0_g1:6097	si_s59	TRINITY_DN7573_c0_g1	6086	6106	6097	-29.20	-19.10	0.654109589041096	10.5	5-13,6102-6094;15-21,6092-6086	1-4,6106-6103[UP5];14-14,6093-6093[SIL]	(((((((.(((((((((....&....))))))))).)))))))	AAGUGGGCGUUGCUAGCAGCU&UCAAGUUAGCAACUUCUAUUU	4	0.991505912415981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN7573_c0_g1_6097_TPlot.pdf
TRINITY_DN7573_c0_g1:6115	si_a796	TRINITY_DN7573_c0_g1	6104	6124	6115	-32.70	-21.86	0.668501529051988	9	2-6,6123-6119;11-21,6114-6104	1-1,6124-6124[UP5];7-10,6118-6115[SIL]	(((((((((((....(((((.&.)))))....)))))))))))	GCUUCGGAUUGUCUCAUAGAC&UUCUAUUUUCCAAUCCGAAGC	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN7573_c0_g1_6115_TPlot.pdf
TRINITY_DN7573_c0_g1:6116	si_a443	TRINITY_DN7573_c0_g1	6101	6125	6116	-30.00	-20.10	0.67	10.5	1-2,6125-6124;5-16,6121-6110;17-21,6105-6101	3-4,6123-6122[SIL];x-x,6109-6106[BULt]	(((((....((((((((((((..((&))..))))))))))))----)))))	GCAGCUUCGGAUUGUCUCAUAGACA&UGGAUAUGAGAUAAUU----GUUGU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN7573_c0_g1_6116_TPlot.pdf
TRINITY_DN7573_c0_g1:6118	si_a441	TRINITY_DN7573_c0_g1	6107	6127	6118	-29.30	-20.60	0.703071672354949	9	1-4,6127-6124;7-18,6121-6110	5-6,6123-6122[SIL];19-21,6109-6107[UP3]	...((((((((((((..((((&))))..))))))))))))...	UCGGAUUGUCUCAUAGACAGC&GUUGGAUAUGAGAUAAUUGUU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN7573_c0_g1_6118_TPlot.pdf
TRINITY_DN7573_c0_g1:6119	si_a440	TRINITY_DN7573_c0_g1	6108	6128	6119	-30.80	-21.00	0.681818181818182	9	2-5,6127-6124;8-19,6121-6110	1-1,6128-6128[UP5];6-7,6123-6122[SIL];20-21,6109-6108[UP3]	..((((((((((((..((((.&.))))..))))))))))))..	CGGAUUGUCUCAUAGACAGCU&CGUUGGAUAUGAGAUAAUUGU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN7573_c0_g1_6119_TPlot.pdf
TRINITY_DN7576_c0_g1:1203	si_s39	TRINITY_DN7576_c0_g1	1192	1212	1203	-22.30	-15.20	0.681614349775785	11.5	3-11,1210-1202;14-19,1199-1194	1-2,1212-1211[UP5];12-13,1201-1200[SIL];20-21,1193-1192[UP3]	..((((((..(((((((((..&..)))))))))..))))))..	AUAUCCGAGCGUUGGAGAUGU&AAAUCUUUAAUAAUUGGAUUU	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN7576_c0_g1_1203_TPlot.pdf
TRINITY_DN7576_c0_g1:1489	si_a76	TRINITY_DN7576_c0_g1	1478	1498	1489	-21.20	-13.90	0.655660377358491	11.5	4-5,1495-1494;7-20,1492-1479	1-3,1498-1496[UP5];6-6,1493-1493[SIL];21-21,1478-1478[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	AUUGAUGGUGAAGAAGGAAUU&AAAUUGUUUUUCAUUAUUAAG	2	0.999999992200633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN7576_c0_g1_1489_TPlot.pdf
TRINITY_DN7578_c0_g2:873	si_a66	TRINITY_DN7578_c0_g2	861	882	873	-26.70	-21.30	0.797752808988764	8.5	1-10,882-873;13-21,869-861	11-12,872-870[AILt]	(((((((((...((((((((((&))))))))))-..)))))))))	GAGGACAAUACGGAAAGGAGCG&CGCUUCUUUC-AAAUUGUUUUU	2	0.565644506967484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN7578_c0_g2_873_TPlot.pdf
TRINITY_DN7578_c0_g2:880	si_a59	TRINITY_DN7578_c0_g2	869	889	880	-34.00	-22.50	0.661764705882353	11	1-1,889-889;3-3,887-887;6-17,884-873	2-2,888-888[SIL];4-5,886-885[SIL];18-21,872-869[UP3]	....((((((((((((..(.(&).)..))))))))))))....	UACGGAAAGGAGCGAGGAGUC&GUCGACUCGCUUCUUUCAAAU	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN7578_c0_g2_880_TPlot.pdf
TRINITY_DN7578_c0_g2:902	si_a403	TRINITY_DN7578_c0_g2	891	911	902	-22.00	-15.00	0.681818181818182	12	2-2,910-910;5-17,907-895	1-1,911-911[UP5];3-4,909-908[SIL];18-21,894-891[UP3]	....(((((((((((((..(.&.)..)))))))))))))....	GUCAAUGAGCAGAGCAAGGCA&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999153632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7578_c0_g2_902_TPlot.pdf
TRINITY_DN7581_c0_g1:54	si_a406	TRINITY_DN7581_c0_g1	37	63	54	-19.80	-12.90	0.651515151515151	16.5	1-10,63-54;11-19,47-39	x-x,53-48[BULt];20-21,38-37[UP3]	..(((((((((......((((((((((&))))))))))------)))))))))..	AGUAAAUGUAACACUUUACAAAGCGAU&AUUGUUUUGU------UUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN7581_c0_g1_54_TPlot.pdf
TRINITY_DN7581_c0_g1:55	si_a405	TRINITY_DN7581_c0_g1	38	64	55	-19.80	-13.10	0.661616161616162	16.5	2-11,63-54;12-20,47-39	1-1,64-64[UP5];x-x,53-48[BULt];21-21,38-38[UP3]	.(((((((((......((((((((((.&.))))))))))------))))))))).	GUAAAUGUAACACUUUACAAAGCGAUA&AAUUGUUUUGU------UUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7581_c0_g1_55_TPlot.pdf
TRINITY_DN7582_c0_g1:192	si_s63	TRINITY_DN7582_c0_g1	181	203	192	-25.80	-18.10	0.701550387596899	9.5	1-8,203-196;10-20,192-182	9-9,195-193[AILt];21-21,181-181[UP3]	.(((((((((((...((((((((&))))))))--.))))))))))).	UGAAAAGUGGAAUUUUUGCUGAC&GUUAGCAA--CUUCUAUUUUUUU	3	0.998769971588408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN7582_c0_g1_192_TPlot.pdf
TRINITY_DN7583_c0_g1:1025	si_a146	TRINITY_DN7583_c0_g1	1017	1034	1025	-29.70	-19.40	0.653198653198653	8	3-13,1032-1022;17-21,1021-1017	1-2,1034-1033[UP5];14-16,x-x[BULq]	(((((---(((((((((((..&..)))))))))))...)))))	GACCU---AAUAACAGCGAAA&AAUCGUUGUUGUUUUAAGGUC	4	0.999999979669509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN7583_c0_g1_1025_TPlot.pdf
TRINITY_DN7583_c0_g1:1749	si_a787	TRINITY_DN7583_c0_g1	1733	1758	1749	-26.30	-18.82	0.715589353612167	8	1-14,1758-1745;16-21,1738-1733	15-15,1744-1739[AILt]	((((((......((((((((((((((&))))))))))))))-----.))))))	UGGAAGUAUGGUUGGAAAAAUGGAAG&CUUCUAUUUUUCUA-----UUUUCCA	2	0.998974649019026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7583_c0_g1_1749_TPlot.pdf
TRINITY_DN7583_c0_g1:719	si_a400	TRINITY_DN7583_c0_g1	708	728	719	-22.80	-16.60	0.728070175438597	7	1-6,728-723;8-18,721-711	7-7,722-722[SIL];19-21,710-708[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	CAGAGGCAAGACAACUCUAUA&UAUAGAAUUGUUUUGUUUAUA	4	0.992946040348501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN7583_c0_g1_719_TPlot.pdf
TRINITY_DN7583_c0_g1:720	si_a399	TRINITY_DN7583_c0_g1	709	729	720	-22.60	-17.90	0.792035398230088	5.5	1-7,729-723;9-19,721-711	8-8,722-722[SIL];20-21,710-709[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	AGAGGCAAGACAACUCUAUAU&AUAUAGAAUUGUUUUGUUUAU	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN7583_c0_g1_720_TPlot.pdf
TRINITY_DN7584_c0_g1:1524	si_a175	TRINITY_DN7584_c0_g1	1512	1533	1524	-33.40	-24.10	0.721556886227545	7	1-16,1533-1518;17-19,1516-1514	x-x,1517-1517[BULt];20-21,1513-1512[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	UUGGUCAUUGUUUGGAUGGGUG&CACCCGUCUAGAUAAU-AUCUU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a175_TRINITY_DN7584_c0_g1_1524_TPlot.pdf
TRINITY_DN7584_c0_g1:1525	si_a174	TRINITY_DN7584_c0_g1	1513	1534	1525	-34.40	-25.50	0.741279069767442	6	1-17,1534-1518;18-20,1516-1514	x-x,1517-1517[BULt];21-21,1513-1513[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	UGGUCAUUGUUUGGAUGGGUGA&UCACCCGUCUAGAUAAU-AUCU	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a174_TRINITY_DN7584_c0_g1_1525_TPlot.pdf
TRINITY_DN7584_c0_g1:1810	si_s735	TRINITY_DN7584_c0_g1	1799	1820	1810	-35.50	-23.30	0.656338028169014	8	1-7,1820-1814;8-12,1812-1808;14-18,1806-1802	x-x,1813-1813[BULt];13-13,1807-1807[SIL];19-21,1801-1799[UP3]	...(((((.(((((.(((((((&)))))))-))))).)))))...	AUUGUCUGAUCACCUCGUCUGG&CUAGACG-GGUGAAUAGAUUGA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s735_TRINITY_DN7584_c0_g1_1810_TPlot.pdf
TRINITY_DN7584_c0_g1:1811	si_s734	TRINITY_DN7584_c0_g1	1800	1821	1811	-35.50	-23.30	0.656338028169014	8	2-8,1820-1814;9-13,1812-1808;15-19,1806-1802	1-1,1821-1821[UP5];x-x,1813-1813[BULt];14-14,1807-1807[SIL];20-21,1801-1800[UP3]	..(((((.(((((.(((((((.&.)))))))-))))).)))))..	UUGUCUGAUCACCUCGUCUGGU&UCUAGACG-GGUGAAUAGAUUG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s734_TRINITY_DN7584_c0_g1_1811_TPlot.pdf
TRINITY_DN7584_c0_g1:1812	si_s733	TRINITY_DN7584_c0_g1	1801	1822	1812	-34.00	-23.30	0.685294117647059	9	3-9,1820-1814;10-14,1812-1808;16-20,1806-1802	1-2,1822-1821[UP5];x-x,1813-1813[BULt];15-15,1807-1807[SIL];21-21,1801-1801[UP3]	.(((((.(((((.(((((((..&..)))))))-))))).))))).	UGUCUGAUCACCUCGUCUGGUU&AUCUAGACG-GGUGAAUAGAUU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s733_TRINITY_DN7584_c0_g1_1812_TPlot.pdf
TRINITY_DN7584_c0_g1:1814	si_s732	TRINITY_DN7584_c0_g1	1802	1823	1814	-34.40	-23.30	0.677325581395349	10	4-10,1820-1814;11-15,1812-1808;17-21,1806-1802	1-3,1823-1821[UP5];x-x,1813-1813[BULt];16-16,1807-1807[SIL]	(((((.(((((.(((((((...&...)))))))-))))).)))))	GUCUGAUCACCUCGUCUGGUUG&UAUCUAGACG-GGUGAAUAGAU	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN7584_c0_g1_1814_TPlot.pdf
TRINITY_DN7584_c0_g1:970	si_a320	TRINITY_DN7584_c0_g1	959	979	970	-24.40	-16.90	0.692622950819672	9.5	1-15,979-965	16-21,964-959[UP3]	......(((((((((((((((&)))))))))))))))......	AGACUCGAGAAUCGUGGAUGG&UUAUCCAUGAUUUUUUUAUUC	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN7584_c0_g1_970_TPlot.pdf
TRINITY_DN7584_c0_g1:972	si_a318	TRINITY_DN7584_c0_g1	961	981	972	-22.50	-17.40	0.773333333333333	10	2-17,980-965	1-1,981-981[UP5];18-21,964-961[UP3]	....((((((((((((((((.&.))))))))))))))))....	ACUCGAGAAUCGUGGAUGGGG&AUUUAUCCAUGAUUUUUUUAU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN7584_c0_g1_972_TPlot.pdf
TRINITY_DN7586_c0_g1:268	si_a143	TRINITY_DN7586_c0_g1	257	277	268	-25.10	-16.50	0.657370517928287	7	3-7,275-271;9-21,269-257	1-2,277-276[UP5];8-8,270-270[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	UUUAGAACAACAAAGGUUAGA&AUUAAUCGUUGUUGUUUUAAG	4	0.999999969278308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN7586_c0_g1_268_TPlot.pdf
TRINITY_DN7586_c0_g1:377	si_a145	TRINITY_DN7586_c0_g1	366	386	377	-28.10	-19.40	0.690391459074733	5	1-5,386-382;7-18,380-369;20-21,367-366	6-6,381-381[SIL];19-19,368-368[SIL]	((.((((((((((((.(((((&))))).)))))))))))).))	GCGUUAGAACAACAAAGGUUA&UAAUCGUUGUUGUUUUAAGGU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN7586_c0_g1_377_TPlot.pdf
TRINITY_DN7586_c0_g1:447	si_s74	TRINITY_DN7586_c0_g1	435	456	447	-25.00	-16.80	0.672	5	1-3,456-454;5-8,452-449;10-16,447-441;17-21,439-435	4-4,453-453[SIL];9-9,448-448[SIL];x-x,440-440[BULt]	(((((.(((((((.((((.(((&))).)))).)))))))-)))))	GAAAGAGAAAGAAUAAAAUUAG&CUAUUUUUUUUCUUUC-CUUUC	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7586_c0_g1_447_TPlot.pdf
TRINITY_DN7589_c0_g1:32	si_s69	TRINITY_DN7589_c0_g1	21	42	32	-23.40	-16.40	0.700854700854701	7	3-7,40-36;8-20,34-22	1-2,42-41[UP5];x-x,35-35[BULt];21-21,21-21[UP3]	.(((((((((((((.(((((..&..)))))-))))))))))))).	AGAAGAAGAAAAAUGAGAAGAA&AACUUCU-AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7589_c0_g1_32_TPlot.pdf
TRINITY_DN7589_c0_g1:412	si_s94	TRINITY_DN7589_c0_g1	400	421	412	-35.50	-23.20	0.653521126760563	6	1-14,421-408;16-20,405-401	15-15,407-406[AILt];21-21,400-400[UP3]	.(((((..((((((((((((((&))))))))))))))-.))))).	AAGUCUUCAAGUGAAGAGGAAG&CUUCUUCUUCGCUU-CGGAUUG	3	0.999999999539625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN7589_c0_g1_412_TPlot.pdf
TRINITY_DN758_c0_g1:3180	si_a445	TRINITY_DN758_c0_g1	3169	3189	3180	-27.30	-19.60	0.717948717948718	10.5	1-10,3189-3180;13-17,3177-3173;19-20,3171-3170	11-12,3179-3178[SIL];18-18,3172-3172[SIL];21-21,3169-3169[UP3]	.((.(((((..((((((((((&))))))))))..))))).)).	GGGGAACGAGAGUCUCGUGUC&GAUAUGAGAUAAUUGUUGUUA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN758_c0_g1_3180_TPlot.pdf
TRINITY_DN758_c0_g1:614	si_s507	TRINITY_DN758_c0_g1	603	623	614	-22.70	-16.20	0.713656387665198	10	3-6,621-618;8-19,616-605	1-2,623-622[UP5];7-7,617-617[SIL];20-21,604-603[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	CAGAGAAUGUGGAGGUGUUCA&AAAACAAUUCUAUAUUCUUAA	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN758_c0_g1_614_TPlot.pdf
TRINITY_DN7592_c0_g1:320	si_a23	TRINITY_DN7592_c0_g1	308	329	320	-22.80	-15.90	0.697368421052632	5.5	1-14,329-316;15-19,314-310	x-x,315-315[BULt];20-21,309-308[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	AAUUGGAGACUAAGAAUAAGUA&UAUUUAUUUUUAGU-UCUAAGA	2	0.981366004035086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN7592_c0_g1_320_TPlot.pdf
TRINITY_DN7592_c0_g1:322	si_a21	TRINITY_DN7592_c0_g1	310	331	322	-24.30	-15.90	0.654320987654321	6.5	3-16,329-316;17-21,314-310	1-2,331-330[UP5];x-x,315-315[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	UUGGAGACUAAGAAUAAGUAAU&CCUAUUUAUUUUUAGU-UCUAA	3	0.999999992627961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN7592_c0_g1_322_TPlot.pdf
TRINITY_DN7592_c0_g1:411	si_a183	TRINITY_DN7592_c0_g1	397	420	411	-30.10	-21.22	0.704983388704319	15	3-11,418-410;14-21,404-397	1-2,420-419[UP5];12-13,409-405[AILt]	((((((((.....(((((((((..&..)))))))))---..))))))))	AGCAGGGGUACCUGAUGUUGUCAA&UAGAUAAUAUC---UUUCCCUGUU	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN7592_c0_g1_411_TPlot.pdf
TRINITY_DN7599_c0_g1:159	si_a30	TRINITY_DN7599_c0_g1	147	168	159	-32.70	-22.10	0.675840978593272	9.5	4-15,165-154;16-19,152-149	1-3,168-166[UP5];x-x,153-153[BULt];20-21,148-147[UP3]	..((((.((((((((((((...&...))))))))))))-))))..	GGGCCGAGUCUUAGAAUUAUAG&UUUUAGUUCUAAGAC-CGGUAG	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a30_TRINITY_DN7599_c0_g1_159_TPlot.pdf
TRINITY_DN7599_c0_g1:162	si_a27	TRINITY_DN7599_c0_g1	150	171	162	-30.30	-20.10	0.663366336633663	13	7-18,165-154;19-21,152-150	1-6,171-166[UP5];x-x,153-153[BULt]	(((.((((((((((((......&......))))))))))))-)))	CCGAGUCUUAGAAUUAUAGGAG&UAUUUUUAGUUCUAAGAC-CGG	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a27_TRINITY_DN7599_c0_g1_162_TPlot.pdf
TRINITY_DN7599_c0_g1:819	si_a320	TRINITY_DN7599_c0_g1	808	828	819	-24.40	-16.00	0.655737704918033	9	1-13,828-816	14-21,815-808[UP3]	........(((((((((((((&)))))))))))))........	GACGUUUCAGAUCAUGGAUAA&UUAUCCAUGAUUUUUUUAUUC	3	0.999999995372182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN7599_c0_g1_819_TPlot.pdf
TRINITY_DN759_c0_g1:194	si_s77	TRINITY_DN759_c0_g1	180	203	194	-25.50	-18.30	0.717647058823529	5	1-13,203-191;14-16,189-187;17-21,184-180	x-x,190-190[BULt];x-x,186-185[BULt]	(((((..(((.(((((((((((((&)))))))))))))-)))--)))))	GAAGAAAAAGAGGAAGAAGAAAAA&UUUUUUUUCUUUC-CUU--UCUUC	2	0.999999999999294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN759_c0_g1_194_TPlot.pdf
TRINITY_DN759_c0_g1:198	si_s73	TRINITY_DN759_c0_g1	186	206	198	-24.00	-15.80	0.658333333333333	4.5	1-3,206-204;5-17,203-191;18-21,189-186	4-4,x-x[BULq];x-x,190-190[BULt]	((((.(((((((((((((-(((&))).)))))))))))))-))))	AAAGAGGAAGAAGAAAAA-AGA&UCUAUUUUUUUUCUUUC-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN759_c0_g1_198_TPlot.pdf
TRINITY_DN75_c0_g1:1015	si_s68	TRINITY_DN75_c0_g1	1004	1025	1015	-23.10	-16.20	0.701298701298701	9	4-8,1022-1018;9-21,1016-1004	1-3,1025-1023[UP5];x-x,1017-1017[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	AGAGAAGAAAGAUAAGAAGAAC&CAACUUCU-AUUUUUUUUCUUU	3	0.999999999971826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN75_c0_g1_1015_TPlot.pdf
TRINITY_DN75_c0_g1:1017	si_s78	TRINITY_DN75_c0_g1	1006	1026	1017	-26.20	-18.20	0.694656488549618	8	3-10,1024-1017;13-21,1014-1006	1-2,1026-1025[UP5];11-12,1016-1015[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	AGAAGAAAGAUAAGAAGAACG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN75_c0_g1_1017_TPlot.pdf
TRINITY_DN75_c0_g1:203	si_a897	TRINITY_DN75_c0_g1	192	212	203	-21.20	-13.80	0.650943396226415	6	2-15,211-198;17-19,196-194	1-1,212-212[UP5];16-16,197-197[SIL];20-21,193-192[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	AAUAUUUUAUUUAUUGUUACA&AGUAAUAAUAAGUAAUAUAAA	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN75_c0_g1_203_TPlot.pdf
TRINITY_DN75_c0_g1:570	si_s809	TRINITY_DN75_c0_g1	559	580	570	-28.50	-19.50	0.684210526315789	11	1-8,580-573;10-18,570-562	9-9,572-571[AILt];19-21,561-559[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	UUGAAGAGGAGGAGGAUGAGGA&UCUUCGUU-ACCUUUUCUUAAU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN75_c0_g1_570_TPlot.pdf
TRINITY_DN75_c0_g1:571	si_s808	TRINITY_DN75_c0_g1	560	581	571	-28.60	-20.80	0.727272727272727	10	1-9,581-573;11-19,570-562	10-10,572-571[AILt];20-21,561-560[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	UGAAGAGGAGGAGGAUGAGGAU&AUCUUCGUU-ACCUUUUCUUAA	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN75_c0_g1_571_TPlot.pdf
TRINITY_DN75_c0_g1:574	si_s806	TRINITY_DN75_c0_g1	562	583	574	-28.60	-22.70	0.793706293706294	9	1-11,583-573;13-21,570-562	12-12,572-571[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AAGAGGAGGAGGAUGAGGAUGA&UUAUCUUCGUU-ACCUUUUCUU	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN75_c0_g1_574_TPlot.pdf
TRINITY_DN75_c0_g1:575	si_s805	TRINITY_DN75_c0_g1	563	584	575	-28.60	-22.70	0.793706293706294	8	1-12,584-573;14-21,570-563	13-13,572-571[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	AGAGGAGGAGGAUGAGGAUGAA&UUUAUCUUCGUU-ACCUUUUCU	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN75_c0_g1_575_TPlot.pdf
TRINITY_DN75_c0_g1:576	si_s804	TRINITY_DN75_c0_g1	564	585	576	-27.90	-21.60	0.774193548387097	7.5	2-13,584-573;15-21,570-564	1-1,585-585[UP5];14-14,572-571[AILt]	(((((((..((((((((((((.&.))))))))))))-.)))))))	GAGGAGGAGGAUGAGGAUGAAG&UUUUAUCUUCGUU-ACCUUUUC	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN75_c0_g1_576_TPlot.pdf
TRINITY_DN75_c0_g1:578	si_s802	TRINITY_DN75_c0_g1	566	587	578	-26.40	-17.60	0.666666666666667	11	4-15,584-573;17-21,570-566	1-3,587-585[UP5];16-16,572-571[AILt]	(((((..((((((((((((...&...))))))))))))-.)))))	GGAGGAGGAUGAGGAUGAAGAG&UAUUUUAUCUUCGUU-ACCUUU	4	0.999999999451348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN75_c0_g1_578_TPlot.pdf
TRINITY_DN75_c0_g1:579	si_s80	TRINITY_DN75_c0_g1	567	590	579	-28.20	-20.60	0.730496453900709	8.5	1-8,590-583;9-13,580-576;14-21,574-567	x-x,582-581[BULt];x-x,575-575[BULt]	((((((((.(((((..((((((((&))))))))--)))))-))))))))	GAGGAGGAUGAGGAUGAAGAGGAA&UUUUUCUU--UCCUU-UCUUCUUC	2	0.99999998291587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN75_c0_g1_579_TPlot.pdf
TRINITY_DN75_c0_g1:580	si_s79	TRINITY_DN75_c0_g1	568	591	580	-26.20	-17.60	0.67175572519084	9.5	2-9,590-583;10-14,580-576;15-21,574-568	1-1,591-591[UP5];x-x,582-581[BULt];x-x,575-575[BULt]	(((((((.(((((..((((((((.&.))))))))--)))))-)))))))	AGGAGGAUGAGGAUGAAGAGGAAG&UUUUUUCUU--UCCUU-UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN75_c0_g1_580_TPlot.pdf
TRINITY_DN75_c0_g1:583	si_s899	TRINITY_DN75_c0_g1	572	592	583	-28.30	-19.00	0.671378091872792	7	2-12,591-581;14-18,579-575	1-1,592-592[UP5];13-13,580-580[SIL];19-21,574-572[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	GGAUGAGGAUGAAGAGGAAGA&GCUUUCUCUUCAAUUUCAAUU	2	0.999954338611727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN75_c0_g1_583_TPlot.pdf
TRINITY_DN75_c0_g1:584	si_s77	TRINITY_DN75_c0_g1	570	593	584	-25.50	-18.10	0.709803921568627	9	1-11,593-583;12-16,580-576;17-21,574-570	x-x,582-581[BULt];x-x,575-575[BULt]	(((((.(((((..(((((((((((&)))))))))))--)))))-)))))	GAGGAUGAGGAUGAAGAGGAAGAA&UUUUUUUUCUU--UCCUU-UCUUC	2	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN75_c0_g1_584_TPlot.pdf
TRINITY_DN75_c0_g1:848	si_s92	TRINITY_DN75_c0_g1	836	857	848	-34.90	-25.80	0.739255014326648	6.5	2-15,856-843;16-18,841-839	1-1,857-857[UP5];x-x,842-842[BULt];19-21,838-836[UP3]	...(((.((((((((((((((.&.))))))))))))))-)))...	AGACGAUGGCGAAGAGGAAGAG&UUCUUCUUCUUCGCU-UCGGAU	3	0.987124514546241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN75_c0_g1_848_TPlot.pdf
TRINITY_DN75_c0_g1:850	si_s90	TRINITY_DN75_c0_g1	838	859	850	-35.30	-29.80	0.844192634560907	4.5	1-17,859-843;18-20,841-839	x-x,842-842[BULt];21-21,838-838[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	ACGAUGGCGAAGAGGAAGAGAG&CUUUCUUCUUCUUCGCU-UCGG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN75_c0_g1_850_TPlot.pdf
TRINITY_DN75_c0_g1:853	si_s87	TRINITY_DN75_c0_g1	842	863	853	-32.90	-29.20	0.887537993920973	5.5	1-3,863-861;4-20,859-843	x-x,860-860[BULt];21-21,842-842[UP3]	.(((((((((((((((((.(((&)))-))))))))))))))))).	UGGCGAAGAGGAAGAGAGCGAA&UUC-CUUUCUUCUUCUUCGCUU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN75_c0_g1_853_TPlot.pdf
TRINITY_DN75_c0_g1:854	si_s86	TRINITY_DN75_c0_g1	843	864	854	-32.90	-29.60	0.899696048632219	4.5	1-4,864-861;5-21,859-843	x-x,860-860[BULt]	(((((((((((((((((.((((&))))-)))))))))))))))))	GGCGAAGAGGAAGAGAGCGAAG&UUUC-CUUUCUUCUUCUUCGCU	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN75_c0_g1_854_TPlot.pdf
TRINITY_DN75_c0_g1:855	si_s85	TRINITY_DN75_c0_g1	844	865	855	-33.80	-31.60	0.93491124260355	4.5	1-5,865-861;6-21,859-844	x-x,860-860[BULt]	((((((((((((((((.(((((&)))))-))))))))))))))))	GCGAAGAGGAAGAGAGCGAAGG&CUUUC-CUUUCUUCUUCUUCGC	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN75_c0_g1_855_TPlot.pdf
TRINITY_DN75_c0_g1:856	si_s84	TRINITY_DN75_c0_g1	845	866	856	-32.30	-29.90	0.925696594427245	4.5	1-6,866-861;7-21,859-845	x-x,860-860[BULt]	(((((((((((((((.((((((&))))))-)))))))))))))))	CGAAGAGGAAGAGAGCGAAGGA&UCUUUC-CUUUCUUCUUCUUCG	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN75_c0_g1_856_TPlot.pdf
TRINITY_DN75_c0_g1:857	si_s83	TRINITY_DN75_c0_g1	846	867	857	-30.90	-27.70	0.896440129449838	5.5	2-7,866-861;8-21,859-846	1-1,867-867[UP5];x-x,860-860[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	GAAGAGGAAGAGAGCGAAGGAG&UUCUUUC-CUUUCUUCUUCUUC	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN75_c0_g1_857_TPlot.pdf
TRINITY_DN75_c0_g1:858	si_s82	TRINITY_DN75_c0_g1	847	868	858	-28.90	-25.90	0.896193771626298	5.5	1-8,868-861;9-21,859-847	x-x,860-860[BULt]	(((((((((((((.((((((((&))))))))-)))))))))))))	AAGAGGAAGAGAGCGAAGGAGA&UUUCUUUC-CUUUCUUCUUCUU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN75_c0_g1_858_TPlot.pdf
TRINITY_DN75_c0_g1:859	si_s81	TRINITY_DN75_c0_g1	848	869	859	-28.90	-25.20	0.8719723183391	6.5	2-9,868-861;10-21,859-848	1-1,869-869[UP5];x-x,860-860[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	AGAGGAAGAGAGCGAAGGAGAU&UUUUCUUUC-CUUUCUUCUUCU	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN75_c0_g1_859_TPlot.pdf
TRINITY_DN75_c0_g1:861	si_s80	TRINITY_DN75_c0_g1	849	870	861	-28.20	-23.90	0.847517730496454	8	3-10,868-861;11-21,859-849	1-2,870-869[UP5];x-x,860-860[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GAGGAAGAGAGCGAAGGAGAUG&UUUUUCUUUC-CUUUCUUCUUC	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN75_c0_g1_861_TPlot.pdf
TRINITY_DN75_c0_g1:862	si_s79	TRINITY_DN75_c0_g1	850	871	862	-26.20	-20.70	0.790076335877863	10	4-11,868-861;12-21,859-850	1-3,871-869[UP5];x-x,860-860[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	AGGAAGAGAGCGAAGGAGAUGA&UUUUUUCUUUC-CUUUCUUCUU	3	0.999998256697046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN75_c0_g1_862_TPlot.pdf
TRINITY_DN75_c0_g1:873	si_s73	TRINITY_DN75_c0_g1	861	883	873	-24.00	-16.40	0.683333333333333	10	1-3,883-881;5-13,878-870;14-21,868-861	4-4,880-879[AILt];x-x,869-869[BULt]	((((((((.(((((((((..(((&)))-.)))))))))-))))))))	GAAGGAGAUGAAGAGGAGGAAGA&UCU-AUUUUUUUUC-UUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN75_c0_g1_873_TPlot.pdf
TRINITY_DN75_c0_g1:875	si_a549	TRINITY_DN75_c0_g1	864	884	875	-29.50	-19.90	0.674576271186441	12.5	5-7,880-878;9-21,876-864	1-4,884-881[UP5];8-8,877-877[SIL]	(((((((((((((.(((....&....))).)))))))))))))	GGAGAUGAAGAGGAGGAAGAU&UCAAUCUAUUUCUUUAUCUCC	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN75_c0_g1_875_TPlot.pdf
TRINITY_DN75_c0_g1:884	si_s808	TRINITY_DN75_c0_g1	869	893	884	-28.60	-19.60	0.685314685314685	14	1-10,893-884;11-19,879-871	x-x,883-880[BULt];20-21,870-869[UP3]	..(((((((((....((((((((((&))))))))))----)))))))))..	UGAAGAGGAGGAAGAUGAUGAGGAU&AUCUUCGUUA----CCUUUUCUUAA	3	0.999999391585698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN75_c0_g1_884_TPlot.pdf
TRINITY_DN75_c0_g1:886	si_s806	TRINITY_DN75_c0_g1	871	895	886	-28.60	-21.50	0.751748251748252	13	1-12,895-884;13-21,879-871	x-x,883-880[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	AAGAGGAGGAAGAUGAUGAGGAUGA&UUAUCUUCGUUA----CCUUUUCUU	2	0.880959493187624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN75_c0_g1_886_TPlot.pdf
TRINITY_DN75_c0_g1:887	si_s805	TRINITY_DN75_c0_g1	872	896	887	-28.60	-21.50	0.751748251748252	9	1-13,896-884;14-21,879-872	x-x,883-880[BULt]	((((((((....(((((((((((((&)))))))))))))----))))))))	AGAGGAGGAAGAUGAUGAGGAUGAA&UUUAUCUUCGUUA----CCUUUUCU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN75_c0_g1_887_TPlot.pdf
TRINITY_DN75_c0_g1:888	si_s804	TRINITY_DN75_c0_g1	873	897	888	-27.90	-21.10	0.756272401433692	8.5	1-14,897-884;15-21,879-873	x-x,883-880[BULt]	(((((((....((((((((((((((&))))))))))))))----)))))))	GAGGAGGAAGAUGAUGAGGAUGAAA&UUUUAUCUUCGUUA----CCUUUUC	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN75_c0_g1_888_TPlot.pdf
TRINITY_DN75_c0_g1:890	si_s802	TRINITY_DN75_c0_g1	879	899	890	-26.40	-17.30	0.65530303030303	7.5	3-16,897-884;18-21,882-879	1-2,899-898[UP5];17-17,883-883[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAAGAUGAUGAGGAUGAAAGU&UAUUUUAUCUUCGUUACCUUU	4	0.999999999997542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN75_c0_g1_890_TPlot.pdf
TRINITY_DN7601_c0_g1:1446	si_s337	TRINITY_DN7601_c0_g1	1434	1455	1446	-37.20	-25.22	0.677956989247312	10.5	1-7,1455-1449;9-10,1447-1446;14-21,1441-1434	8-8,1448-1448[SIL];11-13,1445-1442[AILt]	((((((((....((.(((((((&))))))).))-...))))))))	UGUCUCCCGUCGGAUUCGUGUG&CAUACGAUUC-ACGGGGAGAUA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s337_TRINITY_DN7601_c0_g1_1446_TPlot.pdf
TRINITY_DN7601_c0_g1:1994	si_a59	TRINITY_DN7601_c0_g1	1983	2004	1994	-34.00	-22.90	0.673529411764706	10.5	1-7,2004-1998;8-10,1996-1994;13-17,1991-1987	x-x,1997-1997[BULt];11-12,1993-1992[SIL];18-21,1986-1983[UP3]	....(((((..(((.(((((((&)))))))-)))..)))))....	AUCGGAGAGCUGCGCAGUCGAC&GUCGACU-CGCUUCUUUCAAAU	4	0.99861895183806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN7601_c0_g1_1994_TPlot.pdf
TRINITY_DN7601_c0_g1:1995	si_a58	TRINITY_DN7601_c0_g1	1984	2005	1995	-34.60	-22.90	0.661849710982659	9.5	2-8,2004-1998;9-11,1996-1994;14-18,1991-1987	1-1,2005-2005[UP5];x-x,1997-1997[BULt];12-13,1993-1992[SIL];19-21,1986-1984[UP3]	...(((((..(((.(((((((.&.)))))))-)))..)))))...	UCGGAGAGCUGCGCAGUCGACG&AGUCGACU-CGCUUCUUUCAAA	3	0.999816563307628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN7601_c0_g1_1995_TPlot.pdf
TRINITY_DN7601_c0_g1:3225	si_a499	TRINITY_DN7601_c0_g1	3214	3240	3225	-35.20	-28.50	0.809659090909091	16.5	1-4,3240-3237;5-21,3230-3214	x-x,3236-3231[BULt]	(((((((((((((((((......((((&))))------)))))))))))))))))	CCGAGGAAGGCGAAGAGGAGGAUCGGC&GUCG------UUUUUCGUCUUCCUUGG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN7601_c0_g1_3225_TPlot.pdf
TRINITY_DN7601_c0_g1:3516	si_a148	TRINITY_DN7601_c0_g1	3504	3525	3516	-30.30	-20.00	0.66006600660066	8	1-5,3525-3521;7-10,3519-3516;11-20,3514-3505	6-6,3520-3520[SIL];x-x,3515-3515[BULt];21-21,3504-3504[UP3]	.((((((((((.((((.(((((&))))).))))-)))))))))).	AUGGCUUUAGACACAGGAACGA&UCGUUGUUGU-UUUAAGGUCAA	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN7601_c0_g1_3516_TPlot.pdf
TRINITY_DN760_c0_g3:1383	si_a785	TRINITY_DN760_c0_g3	1371	1392	1383	-25.90	-17.20	0.664092664092664	7.5	2-11,1391-1382;12-17,1380-1375;19-21,1373-1371	1-1,1392-1392[UP5];x-x,1381-1381[BULt];18-18,1374-1374[SIL]	(((.((((((.((((((((((.&.))))))))))-)))))).)))	GAACAUGGAGAAGAUGGAAGAU&CUCUUCUAUUU-UUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN760_c0_g3_1383_TPlot.pdf
TRINITY_DN760_c0_g3:564	si_a222	TRINITY_DN760_c0_g3	553	573	564	-25.20	-16.40	0.650793650793651	8.5	1-3,573-571;5-18,569-556	4-4,570-570[SIL];19-21,555-553[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UUCGUGGGAAUAUGGGUAUAA&UUAAACUCAUGUUUCUAUAAU	4	0.999797475951459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN760_c0_g3_564_TPlot.pdf
TRINITY_DN7615_c0_g1:5685	si_s82	TRINITY_DN7615_c0_g1	5666	5694	5685	-28.90	-19.40	0.671280276816609	20.5	1-5,5694-5690;7-11,5688-5684;12-21,5675-5666	6-6,5689-5689[SIL];x-x,5683-5676[BULt]	((((((((((........(((((.(((((&))))).)))))--------))))))))))	GAGAGGGAGACUGCUGAUAAGGAUAGAGA&UUUCUUUCCUU--------UCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7615_c0_g1_5685_TPlot.pdf
TRINITY_DN7615_c0_g1:5708	si_s71	TRINITY_DN7615_c0_g1	5697	5717	5708	-25.70	-16.80	0.653696498054475	10	1-2,5717-5716;4-5,5714-5713;7-20,5711-5698	3-3,5715-5715[SIL];6-6,5712-5712[SIL];21-21,5697-5697[UP3]	.((((((((((((((.((.((&)).)).)))))))))))))).	CGGAGGGAAAAGAGGCAGCGG&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN7615_c0_g1_5708_TPlot.pdf
TRINITY_DN7615_c0_g1:6523	si_s76	TRINITY_DN7615_c0_g1	6511	6532	6523	-23.60	-18.90	0.800847457627119	10	1-11,6532-6522;12-20,6520-6512	x-x,6521-6521[BULt];21-21,6511-6511[UP3]	.(((((((((.(((((((((((&)))))))))))-))))))))).	CAGAGGGGAGCGGAGAGAGAGU&AUUUUUUUUCU-UUCCUUUCUU	4	0.999999884867925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7615_c0_g1_6523_TPlot.pdf
TRINITY_DN7615_c1_g1:2175	si_a142	TRINITY_DN7615_c1_g1	2164	2184	2175	-23.50	-15.70	0.668085106382979	17	7-19,2178-2166	1-6,2184-2179[UP5];20-21,2165-2164[UP3]	..(((((((((((((......&......)))))))))))))..	CGGAAGCGGCGGCGAAAGCGG&AAUUAAUCGUUGUUGUUUUAA	3	0.99999999999989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN7615_c1_g1_2175_TPlot.pdf
TRINITY_DN7619_c0_g2:1527	si_a472	TRINITY_DN7619_c0_g2	1516	1536	1527	-21.50	-14.00	0.651162790697674	8	2-16,1535-1521	1-1,1536-1536[UP5];17-21,1520-1516[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AGACCAACAGUAAUUAUAUAA&AUAUGUAAUUAUUGUUAUAUA	2	0.999948286724216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN7619_c0_g2_1527_TPlot.pdf
TRINITY_DN7619_c0_g2:1528	si_a471	TRINITY_DN7619_c0_g2	1517	1537	1528	-21.10	-14.00	0.663507109004739	8.5	3-17,1535-1521	1-2,1537-1536[UP5];18-21,1520-1517[UP3]	....(((((((((((((((..&..)))))))))))))))....	GACCAACAGUAAUUAUAUAAU&AAUAUGUAAUUAUUGUUAUAU	2	0.99993449074952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN7619_c0_g2_1528_TPlot.pdf
TRINITY_DN7619_c0_g2:1529	si_a470	TRINITY_DN7619_c0_g2	1518	1538	1529	-21.30	-14.00	0.657276995305164	9.5	4-18,1535-1521	1-3,1538-1536[UP5];19-21,1520-1518[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACCAACAGUAAUUAUAUAAUA&UAAUAUGUAAUUAUUGUUAUA	2	0.999910579936388	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN7619_c0_g2_1529_TPlot.pdf
TRINITY_DN7619_c0_g2:1530	si_a469	TRINITY_DN7619_c0_g2	1519	1539	1530	-21.10	-14.00	0.663507109004739	10.5	5-19,1535-1521	1-4,1539-1536[UP5];20-21,1520-1519[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAACAGUAAUUAUAUAAUAC&AUAAUAUGUAAUUAUUGUUAU	2	0.999229893489761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN7619_c0_g2_1530_TPlot.pdf
TRINITY_DN7619_c0_g2:1531	si_a468	TRINITY_DN7619_c0_g2	1520	1540	1531	-21.30	-14.00	0.657276995305164	11.5	6-20,1535-1521	1-5,1540-1536[UP5];21-21,1520-1520[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAACAGUAAUUAUAUAAUACA&UAUAAUAUGUAAUUAUUGUUA	4	0.999970907602407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN7619_c0_g2_1531_TPlot.pdf
TRINITY_DN7621_c0_g1:328	si_a75	TRINITY_DN7621_c0_g1	318	337	328	-21.30	-15.00	0.704225352112676	5	1-13,337-325;15-20,324-319	14-14,x-x[BULq];21-21,318-318[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	AUAAUAA-GGAAGAUAAUUUG&CAAAUUGUUUUUCAUUAUUAA	3	0.999996530283677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN7621_c0_g1_328_TPlot.pdf
TRINITY_DN7621_c0_g1:329	si_a74	TRINITY_DN7621_c0_g1	319	338	329	-22.20	-16.40	0.738738738738739	3.5	1-14,338-325;16-21,324-319	15-15,x-x[BULq]	((((((-((((((((((((((&)))))))))))))).))))))	UAAUAA-GGAAGAUAAUUUGA&UCAAAUUGUUUUUCAUUAUUA	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN7621_c0_g1_329_TPlot.pdf
TRINITY_DN7621_c0_g1:330	si_a73	TRINITY_DN7621_c0_g1	320	339	330	-21.90	-15.70	0.71689497716895	3.5	1-15,339-325;17-21,324-320	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	AAUAA-GGAAGAUAAUUUGAA&UUCAAAUUGUUUUUCAUUAUU	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN7621_c0_g1_330_TPlot.pdf
TRINITY_DN7621_c0_g1:331	si_a72	TRINITY_DN7621_c0_g1	321	340	331	-21.90	-15.20	0.694063926940639	4.5	2-16,339-325;18-21,324-321	1-1,340-340[UP5];17-17,x-x[BULq]	((((-(((((((((((((((.&.))))))))))))))).))))	AUAA-GGAAGAUAAUUUGAAU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999918942414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN7621_c0_g1_331_TPlot.pdf
TRINITY_DN7621_c0_g1:334	si_a69	TRINITY_DN7621_c0_g1	323	345	334	-24.00	-15.80	0.658333333333333	8.5	1-5,345-341;6-19,338-325	x-x,340-339[BULt];20-21,324-323[UP3]	..((((((((((((((..(((((&)))))--))))))))))))))..	AAGGAAGAUAAUUUGAAUAAGGA&UUCUU--UCAAAUUGUUUUUCAU	3	0.99999999999979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN7621_c0_g1_334_TPlot.pdf
TRINITY_DN7621_c0_g1:335	si_a68	TRINITY_DN7621_c0_g1	324	344	335	-25.40	-17.20	0.677165354330709	7.5	1-3,344-342;6-20,339-325	4-5,341-340[SIL];21-21,324-324[UP3]	.(((((((((((((((..(((&)))..))))))))))))))).	AGGAAGAUAAUUUGAAUAAGG&CUUCUUUCAAAUUGUUUUUCA	3	0.999999999323675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7621_c0_g1_335_TPlot.pdf
TRINITY_DN7621_c0_g1:382	si_s73	TRINITY_DN7621_c0_g1	368	391	382	-24.00	-15.80	0.658333333333333	10	1-11,391-381;13-15,380-378;16-21,373-368	12-12,x-x[BULq];x-x,377-374[BULt]	((((((....(((-(((((((((((&))))))))))).)))----))))))	GAAGGAGUUCGAG-AAGAAGAUGGA&UCUAUUUUUUUUCUU----UCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7621_c0_g1_382_TPlot.pdf
TRINITY_DN7621_c0_g1:392	si_a401	TRINITY_DN7621_c0_g1	381	401	392	-22.60	-15.40	0.68141592920354	9.5	2-17,400-385	1-1,401-401[UP5];18-21,384-381[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAGAAGAUGGAGCAGUUCUAG&AUAGAAUUGUUUUGUUUAUAU	3	0.999999895452642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN7621_c0_g1_392_TPlot.pdf
TRINITY_DN7621_c0_g1:393	si_a400	TRINITY_DN7621_c0_g1	382	402	393	-22.80	-15.40	0.675438596491228	10	3-18,400-385	1-2,402-401[UP5];19-21,384-382[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAAGAUGGAGCAGUUCUAGC&UAUAGAAUUGUUUUGUUUAUA	3	0.999999925894147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN7621_c0_g1_393_TPlot.pdf
TRINITY_DN7621_c0_g1:395	si_a398	TRINITY_DN7621_c0_g1	384	404	395	-22.40	-15.40	0.6875	11.5	5-20,400-385	1-4,404-401[UP5];21-21,384-384[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAGAUGGAGCAGUUCUAGCUG&AAUAUAGAAUUGUUUUGUUUA	3	0.999997386582414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN7621_c0_g1_395_TPlot.pdf
TRINITY_DN7621_c0_g1:686	si_a789	TRINITY_DN7621_c0_g1	675	695	686	-24.80	-17.00	0.685483870967742	10	1-9,695-687;11-19,685-677	10-10,686-686[SIL];20-21,676-675[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	CAUGGGAAGUGUGAGGAUGGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999983093593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN7621_c0_g1_686_TPlot.pdf
TRINITY_DN7621_c0_g1:687	si_a788	TRINITY_DN7621_c0_g1	676	696	687	-24.80	-17.40	0.701612903225806	9.5	1-10,696-687;12-20,685-677	11-11,686-686[SIL];21-21,676-676[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	AUGGGAAGUGUGAGGAUGGAG&UUCUAUUUUUCUAUUUUCCAA	3	0.99999863267643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7621_c0_g1_687_TPlot.pdf
TRINITY_DN7621_c0_g1:688	si_a787	TRINITY_DN7621_c0_g1	677	697	688	-26.30	-17.40	0.661596958174905	9.5	2-11,696-687;13-21,685-677	1-1,697-697[UP5];12-12,686-686[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	UGGGAAGUGUGAGGAUGGAGU&CUUCUAUUUUUCUAUUUUCCA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7621_c0_g1_688_TPlot.pdf
TRINITY_DN7624_c0_g1:733	si_s109	TRINITY_DN7624_c0_g1	722	742	733	-26.50	-17.40	0.656603773584906	9	1-11,742-732;13-14,730-729	12-12,731-731[SIL];15-21,728-722[UP3]	.......((.(((((((((((&))))))))))).)).......	UUGCUGGCUUUUUUCCAAUCC&GGAUUGGAAAAUAGAAAAAUA	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s109_TRINITY_DN7624_c0_g1_733_TPlot.pdf
TRINITY_DN7625_c0_g1:1029	si_a191	TRINITY_DN7625_c0_g1	1015	1038	1029	-32.00	-21.70	0.678125	8	1-13,1038-1026;14-16,1022-1020	x-x,1025-1023[BULt];17-21,1019-1015[UP3]	.....(((...(((((((((((((&)))))))))))))---))).....	GGACUGUGUUCAACAGGGAAAGAU&AUCUUUCCCUGUU---CACUAAUA	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN7625_c0_g1_1029_TPlot.pdf
TRINITY_DN7627_c0_g1:1016	si_s72	TRINITY_DN7627_c0_g1	1005	1025	1016	-24.10	-16.30	0.676348547717842	8.5	1-16,1025-1010	17-21,1009-1005[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAUUGAGAAGAGAAGUAGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7627_c0_g1_1016_TPlot.pdf
TRINITY_DN7627_c0_g1:1019	si_s69	TRINITY_DN7627_c0_g1	1008	1028	1019	-23.40	-16.50	0.705128205128205	10	4-19,1025-1010	1-3,1028-1026[UP5];20-21,1009-1008[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGAGAAGAGAAGUAGAAAAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7627_c0_g1_1019_TPlot.pdf
TRINITY_DN7627_c0_g1:1020	si_s68	TRINITY_DN7627_c0_g1	1009	1029	1020	-23.10	-16.50	0.714285714285714	10.5	5-20,1025-1010	1-4,1029-1026[UP5];21-21,1009-1009[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGAGAAGAGAAGUAGAAAAAG&CAACUUCUAUUUUUUUUCUUU	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7627_c0_g1_1020_TPlot.pdf
TRINITY_DN7627_c0_g1:1021	si_s67	TRINITY_DN7627_c0_g1	1010	1030	1021	-25.60	-17.78	0.69453125	8.5	1-2,1030-1029;6-21,1025-1010	3-5,1028-1026[SIL]	((((((((((((((((...((&))...))))))))))))))))	GAGAAGAGAAGUAGAAAAAGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999681681481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN7627_c0_g1_1021_TPlot.pdf
TRINITY_DN7627_c0_g1:1998	si_a114	TRINITY_DN7627_c0_g1	1987	2007	1998	-27.90	-18.40	0.659498207885305	13.5	6-17,2002-1991	1-5,2007-2003[UP5];18-21,1990-1987[UP3]	....((((((((((((.....&.....))))))))))))....	GACAAAGACAAGCUCGGAGCC&AAAUACGAGCUUGUUUUAUAG	3	0.998229208242727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN7627_c0_g1_1998_TPlot.pdf
TRINITY_DN7627_c0_g1:1999	si_a113	TRINITY_DN7627_c0_g1	1988	2008	1999	-26.20	-18.40	0.702290076335878	14.5	7-18,2002-1991	1-6,2008-2003[UP5];19-21,1990-1988[UP3]	...((((((((((((......&......))))))))))))...	ACAAAGACAAGCUCGGAGCCA&AAAAUACGAGCUUGUUUUAUA	3	0.985461674253771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN7627_c0_g1_1999_TPlot.pdf
TRINITY_DN7627_c0_g1:2001	si_a111	TRINITY_DN7627_c0_g1	1990	2010	2001	-26.20	-18.40	0.702290076335878	16.5	9-20,2002-1991	1-8,2010-2003[UP5];21-21,1990-1990[UP3]	.((((((((((((........&........)))))))))))).	AAAGACAAGCUCGGAGCCAAG&AUAAAAUACGAGCUUGUUUUA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN7627_c0_g1_2001_TPlot.pdf
TRINITY_DN7627_c0_g1:2002	si_a110	TRINITY_DN7627_c0_g1	1991	2011	2002	-27.80	-18.10	0.651079136690648	17.5	10-21,2002-1991	1-9,2011-2003[UP5]	((((((((((((.........&.........))))))))))))	AAGACAAGCUCGGAGCCAAGC&GAUAAAAUACGAGCUUGUUUU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN7627_c0_g1_2002_TPlot.pdf
TRINITY_DN7627_c0_g1:2036	si_a67	TRINITY_DN7627_c0_g1	2024	2045	2036	-27.20	-18.40	0.676470588235294	8	1-10,2045-2036;13-20,2032-2025	11-12,2035-2033[AILt];21-21,2024-2024[UP3]	.((((((((...((((((((((&))))))))))-..)))))))).	AAAAAACAAAAAUGGAAGAAGC&GCUUCUUUCA-AAUUGUUUUUC	4	0.999999995494812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN7627_c0_g1_2036_TPlot.pdf
TRINITY_DN7627_c0_g1:206	si_a503	TRINITY_DN7627_c0_g1	195	214	206	-32.10	-21.20	0.660436137071651	5.5	1-6,214-209;8-9,208-207;11-20,205-196	7-7,x-x[BULq];10-10,206-206[SIL];21-21,195-195[UP3]	.((((((((((.((-((((((&)))))).)).)))))))))).	GGUUCCAAGGAUGA-GAAAAA&UUUUUCGUCUUCCUUGGAAUG	3	0.999999996514291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN7627_c0_g1_206_TPlot.pdf
TRINITY_DN7627_c0_g1:207	si_a502	TRINITY_DN7627_c0_g1	196	215	207	-32.10	-21.10	0.657320872274143	5.5	2-7,214-209;9-10,208-207;12-21,205-196	1-1,215-215[UP5];8-8,x-x[BULq];11-11,206-206[SIL]	((((((((((.((-((((((.&.)))))).)).))))))))))	GUUCCAAGGAUGA-GAAAAAG&GUUUUUCGUCUUCCUUGGAAU	3	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN7627_c0_g1_207_TPlot.pdf
TRINITY_DN7627_c0_g1:208	si_a501	TRINITY_DN7627_c0_g1	197	216	208	-33.50	-21.80	0.650746268656716	6	1-1,216-216;3-8,214-209;10-11,208-207;13-21,205-197	2-2,215-215[SIL];9-9,x-x[BULq];12-12,206-206[SIL]	(((((((((.((-((((((.(&).)))))).)).)))))))))	UUCCAAGGAUGA-GAAAAAGG&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999999954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN7627_c0_g1_208_TPlot.pdf
TRINITY_DN7627_c0_g1:2202	si_s805	TRINITY_DN7627_c0_g1	2191	2211	2202	-28.60	-19.20	0.671328671328671	10	2-15,2210-2197	1-1,2211-2211[UP5];16-21,2196-2191[UP3]	......((((((((((((((.&.))))))))))))))......	CCAGGUGGUGAUGAAGAUGAU&UUUAUCUUCGUUACCUUUUCU	3	0.999999996584146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN7627_c0_g1_2202_TPlot.pdf
TRINITY_DN7627_c0_g1:2206	si_s801	TRINITY_DN7627_c0_g1	2195	2215	2206	-28.20	-19.20	0.680851063829787	13	6-19,2210-2197	1-5,2215-2211[UP5];20-21,2196-2195[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUGGUGAUGAAGAUGAUGAUU&GUAUUUUAUCUUCGUUACCUU	4	0.999901665387931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN7627_c0_g1_2206_TPlot.pdf
TRINITY_DN7627_c0_g1:222	si_s69	TRINITY_DN7627_c0_g1	211	230	222	-23.40	-15.80	0.675213675213675	5.5	2-6,229-225;8-20,224-212	1-1,230-230[UP5];7-7,x-x[BULq];21-21,211-211[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	AAAAGGAAAAAGAU-GAAGUA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7627_c0_g1_222_TPlot.pdf
TRINITY_DN7627_c0_g1:223	si_s68	TRINITY_DN7627_c0_g1	212	231	223	-23.10	-15.80	0.683982683982684	6.5	3-7,229-225;9-21,224-212	1-2,231-230[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	AAAGGAAAAAGAU-GAAGUAG&CAACUUCUAUUUUUUUUCUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7627_c0_g1_223_TPlot.pdf
TRINITY_DN7627_c0_g1:224	si_s67	TRINITY_DN7627_c0_g1	213	233	224	-25.60	-17.30	0.67578125	7.5	1-2,233-232;4-8,229-225;10-21,224-213	3-3,231-230[AILt];9-9,x-x[BULq]	((((((((((((-(((((..((&))-.))))).))))))))))))	AAGGAAAAAGAU-GAAGUAGGC&GC-AACUUCUAUUUUUUUUCUU	3	0.999999998900592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN7627_c0_g1_224_TPlot.pdf
TRINITY_DN7627_c0_g1:292	si_a789	TRINITY_DN7627_c0_g1	281	301	292	-24.80	-16.30	0.657258064516129	8	1-16,301-286	17-21,285-281[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUACAAAAAUGGAAGAGUAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN7627_c0_g1_292_TPlot.pdf
TRINITY_DN7627_c0_g1:293	si_a780	TRINITY_DN7627_c0_g1	282	302	293	-27.30	-18.30	0.67032967032967	6	1-3,302-300;5-18,298-285	4-4,299-299[SIL];19-21,284-282[UP3]	...((((((((((((((.(((&))).))))))))))))))...	UACAAAAAUGGAAGAGUAGAA&UUCAACUCUUCUAUUUUUCUA	3	0.999993884044885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN7627_c0_g1_293_TPlot.pdf
TRINITY_DN7627_c0_g1:294	si_a779	TRINITY_DN7627_c0_g1	283	303	294	-27.00	-18.30	0.677777777777778	5.5	2-4,302-300;6-19,298-285	1-1,303-303[UP5];5-5,299-299[SIL];20-21,284-283[UP3]	..((((((((((((((.(((.&.))).))))))))))))))..	ACAAAAAUGGAAGAGUAGAAA&AUUCAACUCUUCUAUUUUUCU	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN7627_c0_g1_294_TPlot.pdf
TRINITY_DN7627_c0_g1:2942	si_a857	TRINITY_DN7627_c0_g1	2932	2951	2942	-25.50	-17.90	0.701960784313725	4.5	1-11,2951-2941;13-20,2940-2933	12-12,x-x[BULq];21-21,2932-2932[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	AUUUAGUAA-UGGAUUUUAAG&CUUGAAAUCCAAUUAUUAAAG	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a857_TRINITY_DN7627_c0_g1_2942_TPlot.pdf
TRINITY_DN7627_c0_g1:2943	si_a856	TRINITY_DN7627_c0_g1	2933	2952	2943	-24.70	-17.70	0.716599190283401	3.5	2-12,2951-2941;14-21,2940-2933	1-1,2952-2952[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	UUUAGUAA-UGGAUUUUAAGA&ACUUGAAAUCCAAUUAUUAAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN7627_c0_g1_2943_TPlot.pdf
TRINITY_DN7627_c0_g1:2944	si_a855	TRINITY_DN7627_c0_g1	2934	2953	2944	-24.70	-16.90	0.684210526315789	5.5	3-13,2951-2941;15-21,2940-2934	1-2,2953-2952[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	UUAGUAA-UGGAUUUUAAGAA&AACUUGAAAUCCAAUUAUUAA	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN7627_c0_g1_2944_TPlot.pdf
TRINITY_DN7627_c0_g1:295	si_a786	TRINITY_DN7627_c0_g1	284	304	295	-26.60	-17.40	0.654135338345865	7.5	3-19,302-286	1-2,304-303[UP5];20-21,285-284[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CAAAAAUGGAAGAGUAGAAAU&UCUUCUAUUUUUCUAUUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7627_c0_g1_295_TPlot.pdf
TRINITY_DN7627_c0_g1:296	si_a777	TRINITY_DN7627_c0_g1	285	305	296	-27.00	-18.30	0.677777777777778	7.5	4-6,302-300;8-21,298-285	1-3,305-303[UP5];7-7,299-299[SIL]	((((((((((((((.(((...&...))).))))))))))))))	AAAAAUGGAAGAGUAGAAAUU&UGAUUCAACUCUUCUAUUUUU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN7627_c0_g1_296_TPlot.pdf
TRINITY_DN7627_c0_g1:297	si_a784	TRINITY_DN7627_c0_g1	286	306	297	-24.70	-17.40	0.704453441295547	9.5	5-21,302-286	1-4,306-303[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAAUGGAAGAGUAGAAAUUA&ACUCUUCUAUUUUUCUAUUUU	3	0.999999992775699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7627_c0_g1_297_TPlot.pdf
TRINITY_DN7627_c0_g1:298	si_a783	TRINITY_DN7627_c0_g1	287	307	298	-24.70	-16.50	0.668016194331984	11	6-21,302-287	1-5,307-303[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAUGGAAGAGUAGAAAUUAU&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7627_c0_g1_298_TPlot.pdf
TRINITY_DN7627_c0_g1:909	si_a81	TRINITY_DN7627_c0_g1	898	918	909	-23.00	-15.00	0.652173913043478	11.5	3-17,916-902	1-2,918-917[UP5];18-21,901-898[UP3]	....(((((((((((((((..&..)))))))))))))))....	CACAUCUUGGUGGUGAAGAUU&GUUUUUCAUUAUUAAGAAAAG	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN7627_c0_g1_909_TPlot.pdf
TRINITY_DN7627_c0_g1:933	si_a318	TRINITY_DN7627_c0_g1	922	942	933	-22.50	-15.20	0.675555555555556	13	6-18,937-925	1-5,942-938[UP5];19-21,924-922[UP3]	...(((((((((((((.....&.....)))))))))))))...	AUCAAAGAGUCAUGGACCACU&AUUUAUCCAUGAUUUUUUUAU	4	0.999999999988679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN7627_c0_g1_933_TPlot.pdf
TRINITY_DN7629_c0_g1:1040	si_a85	TRINITY_DN7629_c0_g1	1029	1052	1040	-25.00	-16.84	0.6736	12.5	2-5,1051-1048;7-19,1043-1031	1-1,1052-1052[UP5];6-6,1047-1044[AILt];20-21,1030-1029[UP3]	..(((((((((((((....((((.&.))))---.)))))))))))))..	AGGCCUUUUCUUAAUUCCUGUGAU&UUCAU---UAUUAAGAAAAGGUAA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN7629_c0_g1_1040_TPlot.pdf
TRINITY_DN762_c0_g1:766	si_a777	TRINITY_DN762_c0_g1	755	774	766	-27.00	-17.70	0.655555555555556	6	2-4,773-771;6-7,770-769;9-21,767-755	1-1,774-774[UP5];5-5,x-x[BULq];8-8,768-768[SIL]	(((((((((((((.((-(((.&.))).)).)))))))))))))	AAAAAUAGAAGAGGUG-GUCU&UGAUUCAACUCUUCUAUUUUU	4	0.99999486274582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN762_c0_g1_766_TPlot.pdf
TRINITY_DN7630_c0_g1:1150	si_s63	TRINITY_DN7630_c0_g1	1139	1164	1150	-25.80	-16.80	0.651162790697674	18.5	1-6,1164-1159;9-19,1151-1141	7-8,1158-1152[AILt];20-21,1140-1139[UP3]	..(((((((((((.......((((((&))))))-----..)))))))))))..	UCGAAGAUGGAAGGAUUCCAGCUAGC&GUUAGC-----AACUUCUAUUUUUUU	3	0.999999997210147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN7630_c0_g1_1150_TPlot.pdf
TRINITY_DN7630_c0_g1:2222	si_a153	TRINITY_DN7630_c0_g1	2204	2231	2222	-28.70	-18.70	0.651567944250871	19.5	1-10,2231-2222;11-20,2214-2205	x-x,2221-2215[BULt];21-21,2204-2204[UP3]	.((((((((((.......((((((((((&))))))))))-------)))))))))).	UUGGAUUGGCCAACGGUAUUAGGACGAU&GUUGUUUUAA-------GGUCAAUCUAU	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN7630_c0_g1_2222_TPlot.pdf
TRINITY_DN7630_c0_g1:946	si_a776	TRINITY_DN7630_c0_g1	935	954	946	-27.10	-17.70	0.653136531365314	8.5	1-3,954-952;5-16,951-940	4-4,x-x[BULq];17-21,939-935[UP3]	.....((((((((((((-(((&))).)))))))))))).....	GGGCGAGAGGAGUUGGA-CAA&UUGAUUCAACUCUUCUAUUUU	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN7630_c0_g1_946_TPlot.pdf
TRINITY_DN7630_c0_g1:952	si_a770	TRINITY_DN7630_c0_g1	941	963	952	-28.70	-19.60	0.682926829268293	11.5	1-7,963-957;8-9,953-952;11-21,951-941	x-x,956-954[BULt];10-10,x-x[BULq]	(((((((((((-((...(((((((&)))))))---)).)))))))))))	GAGGAGUUGGA-CAACUGUCAGAA&UUUUGAU---UGAUUCAACUCUUC	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN7630_c0_g1_952_TPlot.pdf
TRINITY_DN7632_c0_g1:735	si_a94	TRINITY_DN7632_c0_g1	724	744	735	-28.60	-19.20	0.671328671328671	7	3-14,742-731;16-19,729-726	1-2,744-743[UP5];15-15,730-730[SIL];20-21,725-724[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	GAAUCUCCGUUAUCUUUUCAG&AAGAAAAGGUAACGAAGAUAA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a94_TRINITY_DN7632_c0_g1_735_TPlot.pdf
TRINITY_DN7632_c0_g1:737	si_a92	TRINITY_DN7632_c0_g1	726	746	737	-28.60	-18.90	0.660839160839161	9	5-16,742-731;18-21,729-726	1-4,746-743[UP5];17-17,730-730[SIL]	((((.((((((((((((....&....)))))))))))).))))	AUCUCCGUUAUCUUUUCAGAU&UUAAGAAAAGGUAACGAAGAU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN7632_c0_g1_737_TPlot.pdf
TRINITY_DN7634_c0_g1:1237	si_a757	TRINITY_DN7634_c0_g1	1225	1246	1237	-33.10	-25.40	0.767371601208459	8.5	2-11,1245-1236;12-18,1234-1228	1-1,1246-1246[UP5];x-x,1235-1235[BULt];19-21,1227-1225[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	UUACAGAAACACCGAGGGAGGA&ACCUCCUUUGG-GUUUUUGAUU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN7634_c0_g1_1237_TPlot.pdf
TRINITY_DN7635_c0_g1:2407	si_s48	TRINITY_DN7635_c0_g1	2396	2416	2407	-28.80	-23.50	0.815972222222222	6	3-18,2414-2399;20-21,2397-2396	1-2,2416-2415[UP5];19-19,2398-2398[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	GCCAACUUGAGAUCCAGUUUC&AUAAUUGGAUUUCAAGUUAGC	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN7635_c0_g1_2407_TPlot.pdf
TRINITY_DN7635_c0_g1:2594	si_a793	TRINITY_DN7635_c0_g1	2580	2603	2594	-28.50	-20.80	0.729824561403509	12	1-11,2603-2593;12-19,2589-2582	x-x,2592-2590[BULt];20-21,2581-2580[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	CGGGAUUGGAUGUAGAUAGAGGGA&UUUUUCUAUUU---UCCAAUCCGA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN7635_c0_g1_2594_TPlot.pdf
TRINITY_DN7635_c0_g1:2595	si_a792	TRINITY_DN7635_c0_g1	2581	2604	2595	-27.60	-20.80	0.753623188405797	12	2-12,2603-2593;13-20,2589-2582	1-1,2604-2604[UP5];x-x,2592-2590[BULt];21-21,2581-2581[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	GGGAUUGGAUGUAGAUAGAGGGAG&AUUUUUCUAUUU---UCCAAUCCG	2	0.697244668949574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN7635_c0_g1_2595_TPlot.pdf
TRINITY_DN7635_c0_g1:2597	si_a790	TRINITY_DN7635_c0_g1	2583	2606	2597	-25.80	-16.90	0.655038759689922	11.5	4-14,2603-2593;15-21,2589-2583	1-3,2606-2604[UP5];x-x,2592-2590[BULt]	(((((((...(((((((((((...&...)))))))))))---)))))))	GAUUGGAUGUAGAUAGAGGGAGGU&CUAUUUUUCUAUUU---UCCAAUC	3	0.999999988016304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN7635_c0_g1_2597_TPlot.pdf
TRINITY_DN7635_c0_g1:728	si_a864	TRINITY_DN7635_c0_g1	718	737	728	-25.00	-16.80	0.672	5.5	1-12,737-726;14-18,725-721	13-13,x-x[BULq];19-21,720-718[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	AACGAAUC-UUGAUAAUUGGA&UCCAAUUAUUAAAGAUUUAGU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a864_TRINITY_DN7635_c0_g1_728_TPlot.pdf
TRINITY_DN7635_c0_g1:729	si_a863	TRINITY_DN7635_c0_g1	719	738	729	-24.40	-16.80	0.688524590163935	5.5	2-13,737-726;15-19,725-721	1-1,738-738[UP5];14-14,x-x[BULq];20-21,720-719[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	ACGAAUC-UUGAUAAUUGGAA&AUCCAAUUAUUAAAGAUUUAG	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN7635_c0_g1_729_TPlot.pdf
TRINITY_DN7635_c0_g1:730	si_a862	TRINITY_DN7635_c0_g1	720	739	730	-22.70	-16.80	0.740088105726872	6.5	3-14,737-726;16-20,725-721	1-2,739-738[UP5];15-15,x-x[BULq];21-21,720-720[UP3]	.(((((-((((((((((((..&..)))))))))))).))))).	CGAAUC-UUGAUAAUUGGAAA&AAUCCAAUUAUUAAAGAUUUA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN7635_c0_g1_730_TPlot.pdf
TRINITY_DN7635_c0_g1:732	si_a80	TRINITY_DN7635_c0_g1	721	743	732	-22.10	-15.60	0.705882352941176	8.5	1-8,743-736;9-18,733-724	x-x,735-734[BULt];19-21,723-721[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	GAAUCUUGAUAAUUGGAAAAGCA&UGUUUUUC--AUUAUUAAGAAAA	2	0.968959905038749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN7635_c0_g1_732_TPlot.pdf
TRINITY_DN7635_c0_g1:733	si_a79	TRINITY_DN7635_c0_g1	722	744	733	-22.20	-16.00	0.720720720720721	8	1-9,744-736;10-19,733-724	x-x,735-734[BULt];20-21,723-722[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	AAUCUUGAUAAUUGGAAAAGCAG&UUGUUUUUC--AUUAUUAAGAAA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN7635_c0_g1_733_TPlot.pdf
TRINITY_DN7635_c0_g1:736	si_a78	TRINITY_DN7635_c0_g1	723	745	736	-22.30	-17.30	0.775784753363229	7.5	1-10,745-736;11-20,733-724	x-x,735-734[BULt];21-21,723-723[UP3]	.((((((((((..((((((((((&))))))))))--)))))))))).	AUCUUGAUAAUUGGAAAAGCAGU&AUUGUUUUUC--AUUAUUAAGAA	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN7635_c0_g1_736_TPlot.pdf
TRINITY_DN7635_c0_g1:824	si_a785	TRINITY_DN7635_c0_g1	812	833	824	-25.90	-17.92	0.691891891891892	7	2-15,832-819;19-21,814-812	1-1,833-833[UP5];16-18,818-815[AILt]	(((....((((((((((((((.&.))))))))))))))-...)))	GAAUAUGAGAAAAGUAGGAGAA&CUCUUCUAUUUUUCU-AUUUUC	3	0.999999999966873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7635_c0_g1_824_TPlot.pdf
TRINITY_DN7637_c0_g1:1100	si_s692	TRINITY_DN7637_c0_g1	1089	1109	1100	-24.20	-15.90	0.65702479338843	10	2-6,1108-1104;8-18,1102-1092	1-1,1109-1109[UP5];7-7,1103-1103[SIL];19-21,1091-1089[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	UUGGGAUCGACUAAAUGGAUA&AGUUUAAUUAGUCGAUUUAUU	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s692_TRINITY_DN7637_c0_g1_1100_TPlot.pdf
TRINITY_DN7637_c0_g1:890	si_s15	TRINITY_DN7637_c0_g1	879	899	890	-25.60	-20.50	0.80078125	7.5	2-5,898-895;8-21,892-879	1-1,899-899[UP5];6-7,894-893[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	UGCAAUCAGUGUAGCUAUGAC&AUUAUUACUAUAUUGAUUGCA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN7637_c0_g1_890_TPlot.pdf
TRINITY_DN7638_c0_g1:1067	si_s13	TRINITY_DN7638_c0_g1	1055	1076	1067	-22.90	-16.10	0.703056768558952	9	1-13,1076-1064;14-19,1062-1057	x-x,1063-1063[BULt];20-21,1056-1055[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UUGUCAGUGGUGGUGAUGAUGG&UUAUUAUUACUAU-AUUGAUUG	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN7638_c0_g1_1067_TPlot.pdf
TRINITY_DN7638_c0_g1:1068	si_s12	TRINITY_DN7638_c0_g1	1056	1077	1068	-22.80	-16.30	0.714912280701754	9.5	2-14,1076-1064;15-20,1062-1057	1-1,1077-1077[UP5];x-x,1063-1063[BULt];21-21,1056-1056[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	UGUCAGUGGUGGUGAUGAUGGU&CUUAUUAUUACUAU-AUUGAUU	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN7638_c0_g1_1068_TPlot.pdf
TRINITY_DN7638_c0_g1:1069	si_s11	TRINITY_DN7638_c0_g1	1057	1079	1069	-23.60	-16.50	0.699152542372881	9	1-2,1079-1078;3-15,1076-1064;16-21,1062-1057	x-x,1077-1077[BULt];x-x,1063-1063[BULt]	((((((.(((((((((((((.((&))-)))))))))))))-))))))	GUCAGUGGUGGUGAUGAUGGUGU&AC-UUAUUAUUACUAU-AUUGAU	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN7638_c0_g1_1069_TPlot.pdf
TRINITY_DN7638_c0_g1:1070	si_s10	TRINITY_DN7638_c0_g1	1058	1078	1070	-23.80	-15.80	0.663865546218487	8	1-4,1078-1075;6-16,1074-1064;17-21,1062-1058	5-5,x-x[BULq];x-x,1063-1063[BULt]	(((((.(((((((((((-((((&)))).)))))))))))-)))))	UCAGUGGUGGUGAUGAU-GGUG&UACUUAUUAUUACUAU-AUUGA	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN7638_c0_g1_1070_TPlot.pdf
TRINITY_DN7638_c0_g1:1071	si_s6	TRINITY_DN7638_c0_g1	1060	1079	1071	-21.70	-14.30	0.658986175115207	10	1-6,1079-1074;8-20,1073-1061	7-7,x-x[BULq];21-21,1060-1060[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AGUGGUGGUGAUGA-UGGUGU&AUAUUACUUAUUAUUACUAUA	3	0.999999158860227	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN7638_c0_g1_1071_TPlot.pdf
TRINITY_DN7638_c0_g1:113	si_s67	TRINITY_DN7638_c0_g1	102	122	113	-25.60	-22.10	0.86328125	5	1-18,122-105	19-21,104-102[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUCAGAAGAAAUGGAAGUUGC&GCAACUUCUAUUUUUUUUCUU	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN7638_c0_g1_113_TPlot.pdf
TRINITY_DN7638_c0_g1:480	si_s89	TRINITY_DN7638_c0_g1	468	490	480	-35.30	-28.00	0.793201133144476	5	1-4,490-487;5-16,485-474;17-20,472-469	x-x,486-486[BULt];x-x,473-473[BULt];21-21,468-468[UP3]	.((((.((((((((((((.((((&))))-))))))))))))-)))).	UGAAGACGAAGAAGAAGAUGAGG&CCUU-UCUUCUUCUUCG-CUUCG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7638_c0_g1_480_TPlot.pdf
TRINITY_DN7638_c0_g1:482	si_s87	TRINITY_DN7638_c0_g1	470	492	482	-32.90	-26.80	0.814589665653495	4	1-6,492-487;7-18,485-474;19-21,472-470	x-x,486-486[BULt];x-x,473-473[BULt]	(((.((((((((((((.((((((&))))))-))))))))))))-)))	AAGACGAAGAAGAAGAUGAGGAA&UUCCUU-UCUUCUUCUUCG-CUU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN7638_c0_g1_482_TPlot.pdf
TRINITY_DN7638_c0_g1:483	si_s86	TRINITY_DN7638_c0_g1	471	493	483	-32.90	-26.80	0.814589665653495	4	1-7,493-487;8-19,485-474;20-21,472-471	x-x,486-486[BULt];x-x,473-473[BULt]	((.((((((((((((.(((((((&)))))))-))))))))))))-))	AGACGAAGAAGAAGAUGAGGAAA&UUUCCUU-UCUUCUUCUUCG-CU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7638_c0_g1_483_TPlot.pdf
TRINITY_DN7638_c0_g1:490	si_s80	TRINITY_DN7638_c0_g1	478	500	490	-28.20	-20.50	0.726950354609929	6.5	3-9,498-492;10-13,490-487;14-21,485-478	1-2,500-499[UP5];x-x,491-491[BULt];x-x,486-486[BULt]	((((((((.((((.(((((((..&..)))))))-))))-))))))))	GAAGAAGAUGAGGAAAAGAAACC&UUUUUCUUU-CCUU-UCUUCUUC	4	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7638_c0_g1_490_TPlot.pdf
TRINITY_DN7638_c0_g1:736	si_s602	TRINITY_DN7638_c0_g1	725	746	736	-28.10	-19.80	0.704626334519573	8	1-4,746-743;5-18,741-728	x-x,742-742[BULt];19-21,727-725[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	AGAAAGAAGGGUUUGCUAUGGA&UCCA-AGCGAAUCUUUUUUAAA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN7638_c0_g1_736_TPlot.pdf
TRINITY_DN7638_c0_g1:738	si_s600	TRINITY_DN7638_c0_g1	727	748	738	-28.20	-19.80	0.702127659574468	8.5	3-6,746-743;7-20,741-728	1-2,748-747[UP5];x-x,742-742[BULt];21-21,727-727[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AAAGAAGGGUUUGCUAUGGACU&AAUCCA-AGCGAAUCUUUUUUA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN7638_c0_g1_738_TPlot.pdf
TRINITY_DN7640_c0_g1:3916	si_a600	TRINITY_DN7640_c0_g1	3906	3925	3916	-29.70	-19.40	0.653198653198653	7.5	3-12,3923-3914;15-20,3912-3907	1-2,3925-3924[UP5];13-14,3913-3913[AILq];21-21,3906-3906[UP3]	.((((((.-((((((((((..&..))))))))))..)))))).	CUUGGAGA-GCGAAGAUUCCA&CAGAAUUUUCGCAAUUCCAAU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN7640_c0_g1_3916_TPlot.pdf
TRINITY_DN7640_c0_g1:619	si_s375	TRINITY_DN7640_c0_g1	606	627	619	-44.10	-29.30	0.664399092970522	7	1-2,627-626;4-15,625-614;16-16,612-612;17-21,610-606	3-3,x-x[BULq];x-x,613-613[BULt];x-x,611-611[BULt]	(((((.(.((((((((((((-((&)).))))))))))))-)-)))))	AGGGCUGUGGCAUGCGGGCG-UC&GAUCGCUCGCGUGUC-C-GCCUU	4	0.999784537751158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN7640_c0_g1_619_TPlot.pdf
TRINITY_DN7640_c0_g1:823	si_a716	TRINITY_DN7640_c0_g1	813	832	823	-33.40	-22.40	0.67065868263473	7	1-3,832-830;5-7,828-826;9-13,824-820;15-21,819-813	4-4,829-829[SIL];8-8,825-825[SIL];14-14,x-x[BULq]	(((((((-(((((.(((.(((&))).))).))))).)))))))	GCCCGAG-AGCGACUGUCUUG&CAAAAUAAUCGUUACUCGGGC	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN7640_c0_g1_823_TPlot.pdf
TRINITY_DN7640_c0_g1:913	si_a56	TRINITY_DN7640_c0_g1	898	922	913	-38.90	-25.40	0.652956298200514	8.5	1-5,922-918;7-14,916-909;15-19,905-901;20-21,899-898	6-6,917-917[SIL];x-x,908-906[BULt];x-x,900-900[BULt]	((.(((((...((((((((.(((((&))))).))))))))---)))))-))	UGCAAAGACCCGGCGGGUCUGCUCC&GGAGUCGACUCGCU---UCUUU-CA	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN7640_c0_g1_913_TPlot.pdf
TRINITY_DN7640_c0_g1:915	si_a54	TRINITY_DN7640_c0_g1	901	924	915	-37.30	-24.80	0.664879356568365	10.5	3-7,922-918;9-16,916-909;17-21,905-901	1-2,924-923[UP5];8-8,917-917[SIL];x-x,908-906[BULt]	(((((...((((((((.(((((..&..))))).))))))))---)))))	AAAGACCCGGCGGGUCUGCUCCAG&UAGGAGUCGACUCGCU---UCUUU	2	0.9818241215556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN7640_c0_g1_915_TPlot.pdf
TRINITY_DN7645_c0_g1:734	si_a435	TRINITY_DN7645_c0_g1	721	743	734	-36.10	-23.90	0.662049861495845	10	1-10,743-734;11-18,731-724	x-x,733-732[BULt];19-21,723-721[UP3]	...((((((((..((((((((((&))))))))))--))))))))...	AAACUCAUAUCAAUGAUGGAUCC&GGAUCCGUUG--GAUAUGAGAUA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a435_TRINITY_DN7645_c0_g1_734_TPlot.pdf
TRINITY_DN7649_c0_g1:1167	si_a192	TRINITY_DN7649_c0_g1	1156	1181	1167	-31.90	-21.50	0.673981191222571	14	1-9,1181-1173;10-16,1167-1161;18-20,1159-1157	x-x,1172-1168[BULt];17-17,1160-1160[SIL];21-21,1156-1156[UP3]	.(((.(((((((.....(((((((((&)))))))))-----))))))).))).	CUAUAAGUGAACUUGAUGGGGGAAGA&UCUUUCCCU-----GUUCACUAAUAA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN7649_c0_g1_1167_TPlot.pdf
TRINITY_DN7649_c0_g1:437	si_a760	TRINITY_DN7649_c0_g1	426	445	437	-31.10	-20.30	0.652733118971061	6	1-5,445-441;7-15,440-432;17-19,430-428	6-6,x-x[BULq];16-16,431-431[SIL];20-21,427-426[UP3]	..(((.(((((((((-(((((&))))).))))))))).)))..	AACAACCAAAAACCC-AGGGA&UCCUUUGGGUUUUUGAUUGAU	3	0.999999999705088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN7649_c0_g1_437_TPlot.pdf
TRINITY_DN764_c1_g1:1234	si_s45	TRINITY_DN764_c1_g1	1223	1243	1234	-24.70	-16.70	0.676113360323887	5.5	1-12,1243-1232;14-18,1230-1226	13-13,1231-1231[SIL];19-21,1225-1223[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	UUGUUGGACUCCAAUUAUUGA&UUAAUAAUUGGAUUUCAAGUU	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s45_TRINITY_DN764_c1_g1_1234_TPlot.pdf
TRINITY_DN764_c1_g1:1235	si_s44	TRINITY_DN764_c1_g1	1224	1244	1235	-24.70	-17.10	0.692307692307692	5	1-13,1244-1232;15-19,1230-1226	14-14,1231-1231[SIL];20-21,1225-1224[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UGUUGGACUCCAAUUAUUGAG&UUUAAUAAUUGGAUUUCAAGU	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN764_c1_g1_1235_TPlot.pdf
TRINITY_DN764_c1_g1:1237	si_s42	TRINITY_DN764_c1_g1	1226	1246	1237	-24.90	-17.10	0.686746987951807	6.5	3-15,1244-1232;17-21,1230-1226	1-2,1246-1245[UP5];16-16,1231-1231[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UUGGACUCCAAUUAUUGAGUU&UCUUUAAUAAUUGGAUUUCAA	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN764_c1_g1_1237_TPlot.pdf
TRINITY_DN764_c1_g1:1238	si_s41	TRINITY_DN764_c1_g1	1227	1247	1238	-25.00	-16.30	0.652	8.5	4-16,1244-1232;18-21,1230-1227	1-3,1247-1245[UP5];17-17,1231-1231[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UGGACUCCAAUUAUUGAGUUC&AUCUUUAAUAAUUGGAUUUCA	3	0.999891632392592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN764_c1_g1_1238_TPlot.pdf
TRINITY_DN764_c1_g1:1541	si_a503	TRINITY_DN764_c1_g1	1530	1550	1541	-32.10	-21.40	0.666666666666667	6.5	1-15,1550-1536;17-19,1534-1532	16-16,1535-1535[SIL];20-21,1531-1530[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	ACUUCAGAGGAAGAUGAGGAA&UUUUUCGUCUUCCUUGGAAUG	3	0.999999830051947	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN764_c1_g1_1541_TPlot.pdf
TRINITY_DN764_c1_g1:1543	si_a501	TRINITY_DN764_c1_g1	1532	1552	1543	-33.50	-24.90	0.743283582089552	5.5	2-17,1551-1536;19-21,1534-1532	1-1,1552-1552[UP5];18-18,1535-1535[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	UUCAGAGGAAGAUGAGGAACA&CGUUUUUCGUCUUCCUUGGAA	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN764_c1_g1_1543_TPlot.pdf
TRINITY_DN764_c1_g1:1544	si_a500	TRINITY_DN764_c1_g1	1533	1553	1544	-34.40	-24.00	0.697674418604651	7.5	3-18,1551-1536;20-21,1534-1533	1-2,1553-1552[UP5];19-19,1535-1535[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	UCAGAGGAAGAUGAGGAACAU&UCGUUUUUCGUCUUCCUUGGA	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN764_c1_g1_1544_TPlot.pdf
TRINITY_DN764_c1_g1:2038	si_s898	TRINITY_DN764_c1_g1	2027	2047	2038	-30.70	-23.90	0.778501628664495	4.5	2-12,2046-2036;15-21,2033-2027	1-1,2047-2047[UP5];13-14,2035-2034[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	AUUGGAAGAGAAGAGAAGGCA&GGCUUUCUCUUCAAUUUCAAU	3	0.62914687786097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN764_c1_g1_2038_TPlot.pdf
TRINITY_DN764_c1_g1:2039	si_s897	TRINITY_DN764_c1_g1	2028	2048	2039	-31.30	-22.70	0.725239616613419	6.5	3-13,2046-2036;16-21,2033-2028	1-2,2048-2047[UP5];14-15,2035-2034[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UUGGAAGAGAAGAGAAGGCAG&AGGCUUUCUCUUCAAUUUCAA	3	0.940029151154677	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN764_c1_g1_2039_TPlot.pdf
TRINITY_DN764_c1_g1:2125	si_s84	TRINITY_DN764_c1_g1	2109	2136	2125	-32.30	-21.60	0.668730650154799	11	1-6,2136-2131;7-15,2128-2120;16-21,2114-2109	x-x,2130-2129[BULt];x-x,2119-2115[BULt]	((((((.....(((((((((..((((((&))))))--)))))))))-----))))))	CGAAGAUCCCUAGAAGGAAGCAGAGAGA&UCUUUC--CUUUCUUCU-----UCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN764_c1_g1_2125_TPlot.pdf
TRINITY_DN764_c1_g1:2140	si_a69	TRINITY_DN764_c1_g1	2129	2152	2140	-24.00	-16.22	0.675833333333333	14	1-7,2152-2146;10-19,2140-2131	8-9,2145-2141[AILt];20-21,2130-2129[UP3]	..((((((((((.....(((((((&)))))))---..))))))))))..	CAGAGAGACAGUAGAUGGAAAGAA&UUCUUUC---AAAUUGUUUUUCAU	4	0.999999998797842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN764_c1_g1_2140_TPlot.pdf
TRINITY_DN764_c1_g1:2151	si_s75	TRINITY_DN764_c1_g1	2141	2160	2151	-24.00	-16.50	0.6875	7	3-16,2158-2145;19-21,2143-2141	1-2,2160-2159[UP5];17-18,2144-2144[AILq]	(((.-((((((((((((((..&..))))))))))))))..)))	AGAU-GGAAAGAAGGAAAAGA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN764_c1_g1_2151_TPlot.pdf
TRINITY_DN764_c1_g1:2158	si_s77	TRINITY_DN764_c1_g1	2146	2167	2158	-25.50	-17.50	0.686274509803922	4.5	1-12,2167-2156;13-17,2154-2150;19-21,2148-2146	x-x,2155-2155[BULt];18-18,2149-2149[SIL]	(((.(((((.((((((((((((&))))))))))))-))))).)))	GAAAGAAGGAAAAGAAAAAGAA&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN764_c1_g1_2158_TPlot.pdf
TRINITY_DN764_c1_g1:2159	si_s76	TRINITY_DN764_c1_g1	2148	2168	2159	-23.60	-16.90	0.716101694915254	3.5	2-13,2167-2156;15-21,2154-2148	1-1,2168-2168[UP5];14-14,2155-2155[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGAAGGAAAAGAAAAAGAAA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN764_c1_g1_2159_TPlot.pdf
TRINITY_DN764_c1_g1:2161	si_s69	TRINITY_DN764_c1_g1	2150	2170	2161	-23.40	-15.70	0.670940170940171	8.5	4-7,2167-2164;9-21,2162-2150	1-3,2170-2168[UP5];8-8,2163-2163[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAGGAAAAGAAAAAGAAAGG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN764_c1_g1_2161_TPlot.pdf
TRINITY_DN764_c1_g1:2241	si_s611	TRINITY_DN764_c1_g1	2229	2250	2241	-28.20	-18.90	0.670212765957447	6	3-10,2248-2241;12-13,2239-2238;14-21,2236-2229	1-2,2250-2249[UP5];11-11,2240-2240[SIL];x-x,2237-2237[BULt]	((((((((.((.((((((((..&..)))))))).))-))))))))	UCGCUUGGUAUAUAAAAAAGCU&AUCUUUUUUAAAU-CCAAGCGA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN764_c1_g1_2241_TPlot.pdf
TRINITY_DN764_c1_g1:2350	si_s439	TRINITY_DN764_c1_g1	2339	2359	2350	-21.50	-14.20	0.66046511627907	5	1-8,2359-2352;10-15,2350-2345;17-21,2343-2339	9-9,2351-2351[SIL];16-16,2344-2344[SIL]	(((((.((((((.((((((((&)))))))).)))))).)))))	UGUUAAAUAUAGAAUGUGAUU&AAUUACAUAUUAUAUAUAACA	4	0.999623796805391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN764_c1_g1_2350_TPlot.pdf
TRINITY_DN764_c1_g1:537	si_a410	TRINITY_DN764_c1_g1	526	546	537	-17.80	-11.80	0.662921348314607	8.5	2-8,545-539;10-18,537-529	1-1,546-546[UP5];9-9,538-538[SIL];19-21,528-526[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GCAGUUUAAAUAGAGACAGAG&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN764_c1_g1_537_TPlot.pdf
TRINITY_DN7650_c0_g1:1083	si_a785	TRINITY_DN7650_c0_g1	1072	1092	1083	-25.90	-18.90	0.72972972972973	9.5	1-8,1092-1085;11-18,1082-1075	9-10,1084-1083[SIL];19-21,1074-1072[UP3]	...((((((((..((((((((&))))))))..))))))))...	CCUAGUAGAGAUUUAGGAGAG&CUCUUCUAUUUUUCUAUUUUC	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7650_c0_g1_1083_TPlot.pdf
TRINITY_DN7650_c0_g1:1084	si_a784	TRINITY_DN7650_c0_g1	1073	1093	1084	-24.70	-18.90	0.765182186234818	9	2-9,1092-1085;12-19,1082-1075	1-1,1093-1093[UP5];10-11,1084-1083[SIL];20-21,1074-1073[UP3]	..((((((((..((((((((.&.))))))))..))))))))..	CUAGUAGAGAUUUAGGAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7650_c0_g1_1084_TPlot.pdf
TRINITY_DN7650_c0_g1:1241	si_a79	TRINITY_DN7650_c0_g1	1230	1250	1241	-22.20	-15.30	0.689189189189189	11	2-2,1249-1249;4-18,1247-1233	1-1,1250-1250[UP5];3-3,1248-1248[SIL];19-21,1232-1230[UP3]	...(((((((((((((((.(.&.).)))))))))))))))...	UUCCUUGGUGGUGAAAGAGGC&UUGUUUUUCAUUAUUAAGAAA	4	0.999988024589162	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN7650_c0_g1_1241_TPlot.pdf
TRINITY_DN7650_c0_g1:1242	si_a78	TRINITY_DN7650_c0_g1	1231	1251	1242	-22.30	-15.30	0.68609865470852	11.5	3-3,1249-1249;5-19,1247-1233	1-2,1251-1250[UP5];4-4,1248-1248[SIL];20-21,1232-1231[UP3]	..(((((((((((((((.(..&..).)))))))))))))))..	UCCUUGGUGGUGAAAGAGGCA&AUUGUUUUUCAUUAUUAAGAA	3	0.999993232577745	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN7650_c0_g1_1242_TPlot.pdf
TRINITY_DN7650_c0_g1:1243	si_a77	TRINITY_DN7650_c0_g1	1232	1252	1243	-22.20	-15.30	0.689189189189189	12	4-4,1249-1249;6-20,1247-1233	1-3,1252-1250[UP5];5-5,1248-1248[SIL];21-21,1232-1232[UP3]	.(((((((((((((((.(...&...).))))))))))))))).	CCUUGGUGGUGAAAGAGGCAA&AAUUGUUUUUCAUUAUUAAGA	2	0.997836334218218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN7650_c0_g1_1243_TPlot.pdf
TRINITY_DN7652_c0_g1:1489	si_s798	TRINITY_DN7652_c0_g1	1478	1498	1489	-29.30	-19.20	0.655290102389078	8.5	4-19,1495-1480	1-3,1498-1496[UP5];20-21,1479-1478[UP3]	..((((((((((((((((...&...))))))))))))))))..	AGAAUGAAGAUAAAAUGCAAC&CUCGUAUUUUAUCUUCGUUAC	4	0.999981141054771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN7652_c0_g1_1489_TPlot.pdf
TRINITY_DN7654_c0_g1:1197	si_a457	TRINITY_DN7654_c0_g1	1185	1206	1197	-23.50	-16.80	0.714893617021277	5.5	1-11,1206-1196;12-17,1194-1189;19-21,1187-1185	x-x,1195-1195[BULt];18-18,1188-1188[SIL]	(((.((((((.(((((((((((&)))))))))))-)))))).)))	GCACGUUGUACUAUAACGACAA&UUGUUGUUAUA-UAUAAUAUGU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN7654_c0_g1_1197_TPlot.pdf
TRINITY_DN7654_c0_g1:1680	si_s78	TRINITY_DN7654_c0_g1	1667	1690	1680	-26.20	-17.60	0.67175572519084	10.5	1-5,1690-1686;6-11,1684-1679;12-21,1676-1667	x-x,1685-1685[BULt];x-x,1678-1677[BULt]	((((((((((..((((((.(((((&)))))-))))))--))))))))))	AGGAGAAAGGCAGAAGAGCGAAGA&UUUUU-UUCUUU--CCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7654_c0_g1_1680_TPlot.pdf
TRINITY_DN7654_c0_g1:1681	si_s77	TRINITY_DN7654_c0_g1	1668	1690	1681	-25.50	-17.90	0.701960784313725	10.5	1-5,1690-1686;7-12,1684-1679;13-21,1676-1668	6-6,1685-1685[SIL];x-x,1678-1677[BULt]	(((((((((..((((((.(((((&))))).))))))--)))))))))	GGAGAAAGGCAGAAGAGCGAAGA&UUUUUUUUCUUU--CCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7654_c0_g1_1681_TPlot.pdf
TRINITY_DN7654_c0_g1:1682	si_s76	TRINITY_DN7654_c0_g1	1669	1691	1682	-23.60	-15.60	0.661016949152542	9	2-6,1690-1686;8-13,1684-1679;14-21,1676-1669	1-1,1691-1691[UP5];7-7,1685-1685[SIL];x-x,1678-1677[BULt]	((((((((..((((((.(((((.&.))))).))))))--))))))))	GAGAAAGGCAGAAGAGCGAAGAA&AUUUUUUUUCUUU--CCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7654_c0_g1_1682_TPlot.pdf
TRINITY_DN7654_c0_g1:1722	si_s69	TRINITY_DN7654_c0_g1	1711	1731	1722	-23.40	-16.10	0.688034188034188	8	3-7,1729-1725;9-20,1723-1712	1-2,1731-1730[UP5];8-8,1724-1724[SIL];21-21,1711-1711[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AGAAGAAGAAAAGAAGAAGGA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7654_c0_g1_1722_TPlot.pdf
TRINITY_DN7654_c0_g1:1723	si_s68	TRINITY_DN7654_c0_g1	1712	1732	1723	-23.10	-15.90	0.688311688311688	9	4-8,1729-1725;10-21,1723-1712	1-3,1732-1730[UP5];9-9,1724-1724[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAAGAAAAGAAGAAGGAA&CAACUUCUAUUUUUUUUCUUU	2	0.999999996933363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7654_c0_g1_1723_TPlot.pdf
TRINITY_DN7654_c0_g1:1736	si_s80	TRINITY_DN7654_c0_g1	1723	1745	1736	-28.20	-21.50	0.762411347517731	9	4-13,1742-1733;14-21,1730-1723	1-3,1745-1743[UP5];x-x,1732-1731[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	GAAGAAGGAAGAGGAAAGAGUUA&UUUUUCUUUCCUU--UCUUCUUC	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7654_c0_g1_1736_TPlot.pdf
TRINITY_DN7654_c0_g1:1737	si_s74	TRINITY_DN7654_c0_g1	1725	1746	1737	-25.00	-16.70	0.668	8	1-3,1746-1744;5-15,1742-1732;16-20,1730-1726	4-4,1743-1743[SIL];x-x,1731-1731[BULt];21-21,1725-1725[UP3]	.(((((.(((((((((((.(((&))).)))))))))))-))))).	AGAAGGAAGAGGAAAGAGUUAG&CUAUUUUUUUUCUUU-CCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN7654_c0_g1_1737_TPlot.pdf
TRINITY_DN7654_c0_g1:1757	si_a783	TRINITY_DN7654_c0_g1	1746	1765	1757	-24.70	-17.30	0.700404858299595	7.5	2-9,1764-1757;11-18,1756-1749	1-1,1765-1765[UP5];10-10,x-x[BULq];19-21,1748-1746[UP3]	...((((((((-((((((((.&.)))))))).))))))))...	GAUUAGAAGAG-AGAAGAGUC&AACUCUUCUAUUUUUCUAUUU	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7654_c0_g1_1757_TPlot.pdf
TRINITY_DN7654_c0_g1:1758	si_a781	TRINITY_DN7654_c0_g1	1748	1767	1758	-27.40	-18.60	0.678832116788321	6	1-2,1767-1766;4-11,1764-1757;13-20,1756-1749	3-3,1765-1765[SIL];12-12,x-x[BULq];21-21,1748-1748[UP3]	.((((((((-((((((((.((&)).)))))))).)))))))).	UUAGAAGAG-AGAAGAGUCGA&UCAACUCUUCUAUUUUUCUAU	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN7654_c0_g1_1758_TPlot.pdf
TRINITY_DN7654_c0_g1:1770	si_s87	TRINITY_DN7654_c0_g1	1754	1779	1770	-32.90	-22.20	0.674772036474164	13.5	2-12,1778-1768;13-17,1762-1758;19-21,1756-1754	1-1,1779-1779[UP5];x-x,1767-1763[BULt];18-18,1757-1757[SIL]	(((.(((((.....(((((((((((.&.)))))))))))-----))))).)))	GAGAGAAGAGUCGAGGAAGAAAGGAG&UUCCUUUCUUCU-----UCUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN7654_c0_g1_1770_TPlot.pdf
TRINITY_DN7654_c0_g1:1771	si_s86	TRINITY_DN7654_c0_g1	1755	1780	1771	-32.90	-22.80	0.693009118541034	7.5	1-13,1780-1768;14-18,1762-1758;20-21,1756-1755	x-x,1767-1763[BULt];19-19,1757-1757[SIL]	((.(((((.....(((((((((((((&)))))))))))))-----))))).))	AGAGAAGAGUCGAGGAAGAAAGGAGA&UUUCCUUUCUUCU-----UCUUCGCU	4	0.999999999999029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7654_c0_g1_1771_TPlot.pdf
TRINITY_DN7654_c0_g1:1774	si_s83	TRINITY_DN7654_c0_g1	1763	1784	1774	-30.90	-22.90	0.741100323624595	7.5	1-4,1784-1781;5-18,1779-1766	x-x,1780-1780[BULt];19-21,1765-1763[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	GUCGAGGAAGAAAGGAGAAGGA&UUCU-UUCCUUUCUUCUUCUUC	4	0.99999992536643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7654_c0_g1_1774_TPlot.pdf
TRINITY_DN7654_c0_g1:1775	si_s82	TRINITY_DN7654_c0_g1	1764	1785	1775	-28.90	-23.00	0.795847750865052	7.5	2-5,1784-1781;6-19,1779-1766	1-1,1785-1785[UP5];x-x,1780-1780[BULt];20-21,1765-1764[UP3]	..((((((((((((((.((((.&.))))-))))))))))))))..	UCGAGGAAGAAAGGAGAAGGAC&UUUCU-UUCCUUUCUUCUUCUU	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7654_c0_g1_1775_TPlot.pdf
TRINITY_DN7654_c0_g1:1810	si_s897	TRINITY_DN7654_c0_g1	1799	1819	1810	-31.30	-20.70	0.661341853035144	9.5	3-13,1817-1807;16-19,1804-1801	1-2,1819-1818[UP5];14-15,1806-1805[SIL];20-21,1800-1799[UP3]	..((((..(((((((((((..&..)))))))))))..))))..	AGGGAAGAGGAGAGAAGGCGA&AGGCUUUCUCUUCAAUUUCAA	2	0.999885305960264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN7654_c0_g1_1810_TPlot.pdf
TRINITY_DN7654_c0_g1:1934	si_s79	TRINITY_DN7654_c0_g1	1923	1944	1934	-26.20	-19.30	0.736641221374046	7.5	1-4,1944-1941;6-8,1939-1937;9-20,1935-1924	5-5,1940-1940[SIL];x-x,1936-1936[BULt];21-21,1923-1923[UP3]	.((((((((((((.(((.((((&)))).)))-)))))))))))).	CGGAAGAAAGGAGAAGACAAGA&UUUUUUCU-UUCCUUUCUUCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7654_c0_g1_1934_TPlot.pdf
TRINITY_DN7654_c0_g1:1937	si_s77	TRINITY_DN7654_c0_g1	1925	1946	1937	-25.50	-18.90	0.741176470588235	7	2-6,1945-1941;8-10,1939-1937;11-21,1935-1925	1-1,1946-1946[UP5];7-7,1940-1940[SIL];x-x,1936-1936[BULt]	(((((((((((.(((.(((((.&.))))).)))-)))))))))))	GAAGAAAGGAGAAGACAAGAAC&UUUUUUUUCU-UUCCUUUCUUC	2	0.999999992851378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7654_c0_g1_1937_TPlot.pdf
TRINITY_DN7654_c0_g1:2184	si_a779	TRINITY_DN7654_c0_g1	2173	2193	2184	-27.00	-23.00	0.851851851851852	4	2-15,2192-2179;17-21,2177-2173	1-1,2193-2193[UP5];16-16,2178-2178[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	AGGAACGUAGGAGAGUUGAAG&AUUCAACUCUUCUAUUUUUCU	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN7654_c0_g1_2184_TPlot.pdf
TRINITY_DN7654_c0_g1:2319	si_s805	TRINITY_DN7654_c0_g1	2306	2328	2319	-28.60	-20.80	0.727272727272727	8	1-3,2328-2326;5-11,2324-2318;12-21,2315-2306	4-4,2325-2325[SIL];x-x,2317-2316[BULt]	((((((((((..(((((((.(((&))).)))))))--))))))))))	AGAGGAGGUACUACGAAGAAAGA&UUUAUCUUCGU--UACCUUUUCU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN7654_c0_g1_2319_TPlot.pdf
TRINITY_DN7655_c0_g2:659	si_a78	TRINITY_DN7655_c0_g2	648	668	659	-22.30	-16.60	0.744394618834081	4	1-16,668-653;19-21,650-648	17-18,652-651[SIL]	(((..((((((((((((((((&))))))))))))))))..)))	UUCACAGUGGUGAAAAACAAU&AUUGUUUUUCAUUAUUAAGAA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN7655_c0_g2_659_TPlot.pdf
TRINITY_DN7658_c0_g2:270	si_a406	TRINITY_DN7658_c0_g2	259	279	270	-19.80	-13.18	0.665656565656566	7	2-14,278-266;18-21,262-259	1-1,279-279[UP5];15-17,265-263[SIL]	((((...(((((((((((((.&.)))))))))))))...))))	UUUAUGGAUGAACAAGGCAAC&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN7658_c0_g2_270_TPlot.pdf
TRINITY_DN7658_c0_g2:475	si_a334	TRINITY_DN7658_c0_g2	464	484	475	-30.70	-20.80	0.677524429967427	7	1-14,484-471	15-21,470-464[UP3]	.......((((((((((((((&)))))))))))))).......	AGUAAAAGGACAAGGAAUAAA&UUUAUUCCUUGUCCCGAAAAU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN7658_c0_g2_475_TPlot.pdf
TRINITY_DN7658_c0_g2:476	si_a333	TRINITY_DN7658_c0_g2	465	485	476	-30.60	-21.00	0.686274509803922	7	2-15,484-471	1-1,485-485[UP5];16-21,470-465[UP3]	......((((((((((((((.&.))))))))))))))......	GUAAAAGGACAAGGAAUAAAU&UUUUAUUCCUUGUCCCGAAAA	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN7658_c0_g2_476_TPlot.pdf
TRINITY_DN7658_c0_g2:478	si_a331	TRINITY_DN7658_c0_g2	467	487	478	-30.60	-21.00	0.686274509803922	9	4-17,484-471	1-3,487-485[UP5];18-21,470-467[UP3]	....((((((((((((((...&...))))))))))))))....	AAAAGGACAAGGAAUAAAUUA&UUUUUUAUUCCUUGUCCCGAA	2	0.991702220255531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN7658_c0_g2_478_TPlot.pdf
TRINITY_DN7658_c0_g2:480	si_a329	TRINITY_DN7658_c0_g2	469	489	480	-29.60	-21.10	0.712837837837838	7	2-3,488-487;6-19,484-471	1-1,489-489[UP5];4-5,486-485[SIL];20-21,470-469[UP3]	..((((((((((((((..((.&.))..))))))))))))))..	AAGGACAAGGAAUAAAUUAAG&AUUUUUUUAUUCCUUGUCCCG	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN7658_c0_g2_480_TPlot.pdf
TRINITY_DN765_c0_g1:571	si_s888	TRINITY_DN765_c0_g1	569	580	571	-26.80	-17.50	0.652985074626866	1	11-21,579-569	10-10,580-580[SIL]	(((((((((((.&.)))))))))))	AAGAGGAAGCCG&AAAAUAAAUAGG	2	0.999829191196717	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN765_c0_g1_571_TPlot.pdf
TRINITY_DN7665_c0_g1:1899	si_a321	TRINITY_DN7665_c0_g1	1882	1908	1899	-26.70	-17.50	0.655430711610487	16	2-10,1907-1899;11-21,1892-1882	1-1,1908-1908[UP5];x-x,1898-1893[BULt]	(((((((((((......(((((((((.&.)))))))))------)))))))))))	GGGAUGGAGAAACUUAUAUUAUGGAUC&UAUCCAUGAU------UUUUUUAUUCC	3	0.999996459327431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN7665_c0_g1_1899_TPlot.pdf
TRINITY_DN7667_c0_g1:854	si_a784	TRINITY_DN7667_c0_g1	843	864	854	-24.70	-16.20	0.65587044534413	9.5	3-9,862-856;10-21,854-843	1-2,864-863[UP5];x-x,855-855[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	AAGAUGGAGGAAUUGGAAGGCA&ACUCUUCUA-UUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7667_c0_g1_854_TPlot.pdf
TRINITY_DN766_c0_g1:500	si_s61	TRINITY_DN766_c0_g1	489	509	500	-26.50	-18.10	0.683018867924528	9	1-5,509-505;7-15,503-495	6-6,504-504[SIL];16-21,494-489[UP3]	......(((((((((.(((((&))))).)))))))))......	UACACAAGAAGUUGCGGACUU&AAGUUAGCAACUUCUAUUUUU	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN766_c0_g1_500_TPlot.pdf
TRINITY_DN766_c0_g1:578	si_s61	TRINITY_DN766_c0_g1	567	587	578	-26.50	-18.10	0.683018867924528	9	1-5,587-583;7-15,581-573	6-6,582-582[SIL];16-21,572-567[UP3]	......(((((((((.(((((&))))).)))))))))......	UACACAAGAAGUUGCGGACUU&AAGUUAGCAACUUCUAUUUUU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN766_c0_g1_578_TPlot.pdf
TRINITY_DN766_c0_g1:656	si_s61	TRINITY_DN766_c0_g1	645	665	656	-26.50	-18.10	0.683018867924528	9	1-5,665-661;7-15,659-651	6-6,660-660[SIL];16-21,650-645[UP3]	......(((((((((.(((((&))))).)))))))))......	UACACAAGAAGUUGCGGACUU&AAGUUAGCAACUUCUAUUUUU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN766_c0_g1_656_TPlot.pdf
TRINITY_DN7671_c0_g1:1534	si_s628	TRINITY_DN7671_c0_g1	1521	1544	1534	-35.40	-23.90	0.675141242937853	9.5	1-9,1544-1536;11-13,1533-1531;14-21,1528-1521	10-10,1535-1534[AILt];x-x,1530-1529[BULt]	((((((((..(((..(((((((((&)))))))))-.)))--))))))))	GGGCGCCUCUACGUUAGAGAUUGC&GCGAUCUUU-UCGU--AGGCGUUU	3	0.999735918146465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN7671_c0_g1_1534_TPlot.pdf
TRINITY_DN7672_c0_g1:10251	si_s152	TRINITY_DN7672_c0_g1	10240	10260	10251	-42.00	-30.10	0.716666666666667	9	1-3,10260-10258;6-10,10255-10251;12-21,10249-10240	4-5,10257-10256[SIL];11-11,10250-10250[SIL]	((((((((((.(((((..(((&)))..))))).))))))))))	UGGCCGUGGGGCUUCUCGGGG&CCCAAAGGAGGUUCAUGGCCA	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s152_TRINITY_DN7672_c0_g1_10251_TPlot.pdf
TRINITY_DN7672_c0_g1:10278	si_s372	TRINITY_DN7672_c0_g1	10267	10288	10278	-45.70	-31.30	0.684901531728665	7.5	1-2,10288-10287;3-4,10285-10284;6-19,10282-10269	x-x,10286-10286[BULt];5-5,10283-10283[SIL];20-21,10268-10267[UP3]	..((((((((((((((.((.((&))-)).))))))))))))))..	CGGGGCACGCGAGUGAGCGAGU&AC-CGAUCGCUCGCGUGUCCGC	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s372_TRINITY_DN7672_c0_g1_10278_TPlot.pdf
TRINITY_DN7672_c0_g1:422	si_a241	TRINITY_DN7672_c0_g1	405	431	422	-36.70	-23.90	0.651226158038147	19	3-11,429-421;12-19,414-407	1-2,431-430[UP5];x-x,420-415[BULt];20-21,406-405[UP3]	..((((((((......(((((((((..&..)))))))))------))))))))..	GUAUCGGGGGCCACUGGUCGGAUUGUU&AUCAAUUCGAU------CCCCCGAUUG	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a241_TRINITY_DN7672_c0_g1_422_TPlot.pdf
TRINITY_DN7674_c0_g1:2300	si_a430	TRINITY_DN7674_c0_g1	2289	2308	2300	-33.70	-22.10	0.655786350148368	7	1-7,2308-2302;9-16,2301-2294;19-20,2291-2290	8-8,x-x[BULq];17-18,2293-2292[SIL];21-21,2289-2289[UP3]	.((..((((((((-(((((((&))))))).))))))))..)).	AAUUGCCGGCGGA-CCUGUAU&AUAUAGGAUCCGUUGGAUAUG	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN7674_c0_g1_2300_TPlot.pdf
TRINITY_DN7674_c0_g1:2301	si_a429	TRINITY_DN7674_c0_g1	2290	2309	2301	-32.00	-21.90	0.684375	7	2-8,2308-2302;10-17,2301-2294;20-21,2291-2290	1-1,2309-2309[UP5];9-9,x-x[BULq];18-19,2293-2292[SIL]	((..((((((((-(((((((.&.))))))).))))))))..))	AUUGCCGGCGGA-CCUGUAUC&AAUAUAGGAUCCGUUGGAUAU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a429_TRINITY_DN7674_c0_g1_2301_TPlot.pdf
TRINITY_DN7677_c0_g1:668	si_a785	TRINITY_DN7677_c0_g1	656	679	668	-25.90	-18.00	0.694980694980695	8.5	1-6,679-674;7-10,671-668;11-21,666-656	x-x,673-672[BULt];x-x,667-667[BULt]	(((((((((((.((((..((((((&))))))--))))-)))))))))))	GGGAAUGGAAACGAUAGUGAAGAG&CUCUUC--UAUU-UUUCUAUUUUC	2	0.999999489215083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7677_c0_g1_668_TPlot.pdf
TRINITY_DN7679_c0_g1:3153	si_a19	TRINITY_DN7679_c0_g1	3141	3163	3153	-27.00	-18.20	0.674074074074074	10.5	1-5,3163-3159;7-12,3156-3151;13-20,3149-3142	6-6,3158-3157[AILt];x-x,3150-3150[BULt];21-21,3141-3141[UP3]	.((((((((.((((((..(((((&)))))-.))))))-)))))))).	UGAGCUGGACGAUAGAGAAGGCU&AGCCU-AUUUAUU-UUUAGUUCU	4	0.999929324546009	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN7679_c0_g1_3153_TPlot.pdf
TRINITY_DN767_c20_g1:16	si_a17	TRINITY_DN767_c20_g1	5	25	16	-24.30	-16.00	0.65843621399177	10.5	6-21,20-5	1-5,25-21[UP5]	((((((((((((((((.....&.....))))))))))))))))	AACUAGAAAUAAGUAGUCACU&AAAGCCUAUUUAUUUUUAGUU	2	0.999992393466011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN767_c20_g1_16_TPlot.pdf
TRINITY_DN767_c2_g1:1803	si_a318	TRINITY_DN767_c2_g1	1792	1812	1803	-22.50	-15.40	0.684444444444444	10.5	1-16,1812-1797	17-21,1796-1792[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAAAUGAGGUUAUGGAUGGGU&AUUUAUCCAUGAUUUUUUUAU	2	0.999996527411654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN767_c2_g1_1803_TPlot.pdf
TRINITY_DN767_c3_g1:2463	si_s735	TRINITY_DN767_c3_g1	2452	2473	2463	-35.50	-23.30	0.656338028169014	8	1-7,2473-2467;8-12,2465-2461;14-18,2459-2455	x-x,2466-2466[BULt];13-13,2460-2460[SIL];19-21,2454-2452[UP3]	...(((((.(((((.(((((((&)))))))-))))).)))))...	AUUGUCUGAUCACCUCGUCUGG&CUAGACG-GGUGAAUAGAUUGA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s735_TRINITY_DN767_c3_g1_2463_TPlot.pdf
TRINITY_DN767_c3_g1:4302	si_s304	TRINITY_DN767_c3_g1	4290	4311	4302	-32.30	-22.80	0.705882352941177	9.5	5-13,4307-4299;14-21,4297-4290	1-4,4311-4308[UP5];x-x,4298-4298[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AGGACAGGCAUUUUCGCGCGAC&GAAUUGCGAAAAU-UCUGUCCU	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN767_c3_g1_4302_TPlot.pdf
TRINITY_DN767_c3_g1:4303	si_s303	TRINITY_DN767_c3_g1	4291	4318	4303	-34.00	-22.10	0.65	16.5	1-5,4318-4314;6-14,4307-4299;15-21,4297-4291	x-x,4313-4308[BULt];x-x,4298-4298[BULt]	(((((((.(((((((((......(((((&)))))------)))))))))-)))))))	GGACAGGCAUUUUCGCGCGACGUGUUUC&GGAAU------UGCGAAAAU-UCUGUCC	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s303_TRINITY_DN767_c3_g1_4303_TPlot.pdf
TRINITY_DN768_c0_g1:289	si_a474	TRINITY_DN768_c0_g1	278	298	289	-23.60	-16.30	0.690677966101695	11.5	6-20,293-279	1-5,298-294[UP5];21-21,278-278[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACUAUGUAACAAUGAUAAAAC&AUGUAAUUAUUGUUAUAUAGA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN768_c0_g1_289_TPlot.pdf
TRINITY_DN7690_c0_g1:6118	si_s64	TRINITY_DN7690_c0_g1	6107	6128	6118	-24.10	-16.10	0.66804979253112	10	4-8,6125-6121;9-21,6119-6107	1-3,6128-6126[UP5];x-x,6120-6120[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	AAAAAAAAUGGAGUGUUGUAGC&UUAGCAAC-UUCUAUUUUUUUU	4	0.99999999995392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN7690_c0_g1_6118_TPlot.pdf
TRINITY_DN7690_c0_g1:6152	si_a76	TRINITY_DN7690_c0_g1	6136	6161	6152	-21.20	-14.10	0.665094339622642	10	3-14,6159-6148;15-21,6142-6136	1-2,6161-6160[UP5];x-x,6147-6143[BULt]	(((((((.....((((((((((((..&..))))))))))))-----)))))))	CUUGAUACUAAAGUGAAAAAUAAUAC&AAAUUGUUUUUCAU-----UAUUAAG	4	0.999999999979399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN7690_c0_g1_6152_TPlot.pdf
TRINITY_DN7692_c0_g1:352	si_s379	TRINITY_DN7692_c0_g1	336	361	352	-42.50	-28.20	0.663529411764706	16.5	2-12,360-350;13-19,344-338	1-1,361-361[UP5];x-x,349-345[BULt];20-21,337-336[UP3]	..(((((((.....(((((((((((.&.)))))))))))-----)))))))..	AGGUAGGGCAUUGAGGGCAUGUGAGG&GCUCGCGUGUCC-----GCCUUACAU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN7692_c0_g1_352_TPlot.pdf
TRINITY_DN7692_c0_g1:414	si_a639	TRINITY_DN7692_c0_g1	403	423	414	-23.60	-15.80	0.669491525423729	10.5	2-5,422-419;7-17,417-407	1-1,423-423[UP5];6-6,418-418[SIL];18-21,406-403[UP3]	....(((((((((((.((((.&.)))).)))))))))))....	GGAAGUUACUCAGAAUGGUCA&CGAUUUUUUUGAGUAAUAUAU	3	0.999999823029944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN7692_c0_g1_414_TPlot.pdf
TRINITY_DN7693_c0_g1:1498	si_a758	TRINITY_DN7693_c0_g1	1487	1507	1498	-34.00	-23.80	0.7	6.5	1-5,1507-1503;7-15,1501-1493;17-18,1491-1490;21-21,1487-1487	6-6,1502-1502[SIL];16-16,1492-1492[SIL];19-20,1489-1488[SIL]	(..((.(((((((((.(((((&))))).))))))))).))..)	CUUUCCAAGACCCAGUGGAGG&CCUCCUUUGGGUUUUUGAUUG	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN7693_c0_g1_1498_TPlot.pdf
TRINITY_DN7693_c0_g1:1500	si_a756	TRINITY_DN7693_c0_g1	1489	1509	1500	-33.10	-23.30	0.70392749244713	8.5	3-7,1507-1503;9-17,1501-1493;19-20,1491-1490	1-2,1509-1508[UP5];8-8,1502-1502[SIL];18-18,1492-1492[SIL];21-21,1489-1489[UP3]	.((.(((((((((.(((((..&..))))).))))))))).)).	UUCCAAGACCCAGUGGAGGGC&AACCUCCUUUGGGUUUUUGAU	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN7693_c0_g1_1500_TPlot.pdf
TRINITY_DN7693_c0_g1:1501	si_a755	TRINITY_DN7693_c0_g1	1490	1510	1501	-34.90	-23.20	0.664756446991404	9.5	4-8,1507-1503;10-18,1501-1493;20-21,1491-1490	1-3,1510-1508[UP5];9-9,1502-1502[SIL];19-19,1492-1492[SIL]	((.(((((((((.(((((...&...))))).))))))))).))	UCCAAGACCCAGUGGAGGGCG&GAACCUCCUUUGGGUUUUUGA	2	0.997224788720479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN7693_c0_g1_1501_TPlot.pdf
TRINITY_DN7693_c0_g1:1507	si_a502	TRINITY_DN7693_c0_g1	1495	1516	1507	-32.10	-21.10	0.657320872274143	12.5	4-14,1513-1503;15-18,1501-1498	1-3,1516-1514[UP5];x-x,1502-1502[BULt];19-21,1497-1495[UP3]	...((((.(((((((((((...&...)))))))))))-))))...	GACCCAGUGGAGGGCGAGAUUU&GUUUUUCGUCUUCC-UUGGAAU	2	0.9999999929398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN7693_c0_g1_1507_TPlot.pdf
TRINITY_DN7693_c0_g1:2043	si_a477	TRINITY_DN7693_c0_g1	2032	2052	2043	-21.50	-15.70	0.730232558139535	9.5	3-5,2050-2048;7-20,2046-2033	1-2,2052-2051[UP5];6-6,2047-2047[SIL];21-21,2032-2032[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	AAUUCUGUAUGGCAACGAUAC&UAAUUAUUGUUAUAUAGAAUA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN7693_c0_g1_2043_TPlot.pdf
TRINITY_DN7693_c0_g1:3305	si_a542	TRINITY_DN7693_c0_g1	3294	3314	3305	-30.70	-20.56	0.669706840390879	11.5	1-7,3314-3308;12-19,3303-3296	8-11,3307-3304[SIL];20-21,3295-3294[UP3]	..((((((((....(((((((&)))))))....))))))))..	UUGAGAUAGAACAUGCCGAUC&GAUCGGUUCAAUCUAUUUCUU	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a542_TRINITY_DN7693_c0_g1_3305_TPlot.pdf
TRINITY_DN7696_c0_g1:414	si_s773	TRINITY_DN7696_c0_g1	403	423	414	-23.10	-16.00	0.692640692640693	13	4-16,420-408	1-3,423-421[UP5];17-21,407-403[UP3]	.....(((((((((((((...&...))))))))))))).....	GACCUUAGCGAUGGUAGUGGU&UUAAUUACUAUUGCUAUAAAA	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN7696_c0_g1_414_TPlot.pdf
TRINITY_DN7696_c0_g1:426	si_s6	TRINITY_DN7696_c0_g1	415	435	426	-21.70	-15.20	0.700460829493088	14.5	7-20,429-416	1-6,435-430[UP5];21-21,415-415[UP3]	.((((((((((((((......&......)))))))))))))).	GGUAGUGGUAAUGAGAACAAU&AUAUUACUUAUUAUUACUAUA	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN7696_c0_g1_426_TPlot.pdf
TRINITY_DN7696_c0_g1:427	si_s5	TRINITY_DN7696_c0_g1	416	438	427	-21.70	-15.60	0.71889400921659	9.5	1-6,438-433;8-21,429-416	7-7,432-430[AILt]	((((((((((((((...((((((&))))))--.))))))))))))))	GUAGUGGUAAUGAGAACAAUGUA&UAUAUU--ACUUAUUAUUACUAU	2	0.921055828159047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN7696_c0_g1_427_TPlot.pdf
TRINITY_DN7696_c0_g1:428	si_s4	TRINITY_DN7696_c0_g1	417	439	428	-21.60	-14.20	0.657407407407407	10	2-7,438-433;9-21,429-417	1-1,439-439[UP5];8-8,432-430[AILt]	(((((((((((((...((((((.&.))))))--.)))))))))))))	UAGUGGUAAUGAGAACAAUGUAC&UUAUAUU--ACUUAUUAUUACUA	3	0.999977200196488	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN7696_c0_g1_428_TPlot.pdf
TRINITY_DN7697_c0_g1:522	si_s797	TRINITY_DN7697_c0_g1	513	532	522	-30.00	-19.80	0.66	10	1-3,532-530;4-10,528-522;13-20,521-514	x-x,529-529[BULt];11-12,x-x[BULq];21-21,513-513[UP3]	.((((((((--(((((((.(((&)))-)))))))..)))))))).	GAGCGGAGA--AAGUGCGAAGC&GCU-CGUAUUUUAUCUUCGUUA	2	0.999974875639803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN7697_c0_g1_522_TPlot.pdf
TRINITY_DN7697_c0_g1:530	si_s97	TRINITY_DN7697_c0_g1	519	539	530	-36.30	-25.20	0.694214876033058	6.5	1-13,539-527;15-17,525-523	14-14,526-526[SIL];18-21,522-519[UP3]	....(((.(((((((((((((&))))))))))))).)))....	AGAAAGUGCGAAGCGAAGGAG&CUUCUUCGCUUCGGAUUGGAA	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN7697_c0_g1_530_TPlot.pdf
TRINITY_DN7697_c0_g1:533	si_s94	TRINITY_DN7697_c0_g1	522	542	533	-35.50	-30.10	0.847887323943662	4.5	1-16,542-527;18-20,525-523	17-17,526-526[SIL];21-21,522-522[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AAGUGCGAAGCGAAGGAGGAG&CUUCUUCUUCGCUUCGGAUUG	2	0.0947726855759187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN7697_c0_g1_533_TPlot.pdf
TRINITY_DN7697_c0_g1:534	si_s93	TRINITY_DN7697_c0_g1	523	543	534	-34.80	-29.90	0.859195402298851	4	1-17,543-527;19-21,525-523	18-18,526-526[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	AGUGCGAAGCGAAGGAGGAGG&UCUUCUUCUUCGCUUCGGAUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN7697_c0_g1_534_TPlot.pdf
TRINITY_DN7697_c0_g1:535	si_s92	TRINITY_DN7697_c0_g1	524	544	535	-34.90	-29.50	0.845272206303725	5.5	2-18,543-527;20-21,525-524	1-1,544-544[UP5];19-19,526-526[SIL]	((.(((((((((((((((((.&.))))))))))))))))).))	GUGCGAAGCGAAGGAGGAGGG&UUCUUCUUCUUCGCUUCGGAU	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN7697_c0_g1_535_TPlot.pdf
TRINITY_DN7697_c0_g1:538	si_s89	TRINITY_DN7697_c0_g1	527	547	538	-35.30	-32.20	0.912181303116147	5	2-21,546-527	1-1,547-547[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	CGAAGCGAAGGAGGAGGGAGU&CCUUUCUUCUUCUUCGCUUCG	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7697_c0_g1_538_TPlot.pdf
TRINITY_DN7697_c0_g1:539	si_s88	TRINITY_DN7697_c0_g1	528	548	539	-34.80	-29.80	0.85632183908046	7	3-21,546-528	1-2,548-547[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAAGCGAAGGAGGAGGGAGUG&UCCUUUCUUCUUCUUCGCUUC	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7697_c0_g1_539_TPlot.pdf
TRINITY_DN7697_c0_g1:544	si_s80	TRINITY_DN7697_c0_g1	533	553	544	-28.20	-20.20	0.716312056737589	8.5	1-4,553-550;6-6,548-548;8-21,546-533	5-5,549-549[SIL];7-7,547-547[SIL]	((((((((((((((.(.((((&)))).).))))))))))))))	GAAGGAGGAGGGAGUGUGAAG&UUUUUCUUUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN7697_c0_g1_544_TPlot.pdf
TRINITY_DN7697_c0_g1:545	si_s79	TRINITY_DN7697_c0_g1	534	554	545	-26.20	-17.40	0.66412213740458	9	1-5,554-550;7-7,548-548;9-21,546-534	6-6,549-549[SIL];8-8,547-547[SIL]	(((((((((((((.(.(((((&))))).).)))))))))))))	AAGGAGGAGGGAGUGUGAAGG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7697_c0_g1_545_TPlot.pdf
TRINITY_DN7698_c0_g1:3855	si_a10	TRINITY_DN7698_c0_g1	3843	3863	3855	-29.50	-19.30	0.654237288135593	8	1-3,3863-3861;5-10,3860-3855;11-18,3853-3846	4-4,x-x[BULq];x-x,3854-3854[BULt];19-21,3845-3843[UP3]	...((((((((.((((((-(((&))).))))))-))))))))...	UAAAGAUGGGCAUUUCUC-UCA&UGAAGAGAAA-GCCUAUUUAUU	4	0.960053251872159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN7698_c0_g1_3855_TPlot.pdf
TRINITY_DN7698_c0_g1:3958	si_s489	TRINITY_DN7698_c0_g1	3946	3967	3958	-17.90	-12.10	0.675977653631285	4	1-15,3967-3953;17-19,3950-3948	16-16,3952-3951[AILt];20-21,3947-3946[UP3]	..(((..(((((((((((((((&)))))))))))))))-.)))..	UAUGUAAUAUAUUUAAAUAAAU&AUUUAUUUAAAUAUA-AACAAA	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN7698_c0_g1_3958_TPlot.pdf
TRINITY_DN7698_c0_g1:3959	si_s488	TRINITY_DN7698_c0_g1	3947	3968	3959	-18.30	-13.40	0.73224043715847	3	1-16,3968-3953;18-20,3950-3948	17-17,3952-3951[AILt];21-21,3947-3947[UP3]	.(((..((((((((((((((((&))))))))))))))))-.))).	AUGUAAUAUAUUUAAAUAAAUA&UAUUUAUUUAAAUAUA-AACAA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN7698_c0_g1_3959_TPlot.pdf
TRINITY_DN7698_c0_g1:3960	si_s487	TRINITY_DN7698_c0_g1	3948	3969	3960	-18.40	-13.20	0.717391304347826	3	2-17,3968-3953;19-21,3950-3948	1-1,3969-3969[UP5];18-18,3952-3951[AILt]	(((..((((((((((((((((.&.))))))))))))))))-.)))	UGUAAUAUAUUUAAAUAAAUAA&AUAUUUAUUUAAAUAUA-AACA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN7698_c0_g1_3960_TPlot.pdf
TRINITY_DN7698_c0_g1:3961	si_s486	TRINITY_DN7698_c0_g1	3950	3970	3961	-18.10	-12.80	0.707182320441989	6	3-18,3968-3953	1-2,3970-3969[UP5];19-21,3952-3950[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAAUAUAUUUAAAUAAAUAAA&UAUAUUUAUUUAAAUAUAAAC	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN7698_c0_g1_3961_TPlot.pdf
TRINITY_DN7698_c0_g1:3962	si_s485	TRINITY_DN7698_c0_g1	3951	3971	3962	-18.10	-12.80	0.707182320441989	7	4-19,3968-3953	1-3,3971-3969[UP5];20-21,3952-3951[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAUAUAUUUAAAUAAAUAAAA&CUAUAUUUAUUUAAAUAUAAA	4	0.993637780358492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN7698_c0_g1_3962_TPlot.pdf
TRINITY_DN7699_c0_g1:3152	si_a19	TRINITY_DN7699_c0_g1	3142	3161	3152	-27.00	-18.20	0.674074074074074	3.5	1-12,3161-3150;15-19,3149-3145;20-21,3143-3142	13-14,x-x[BULq];x-x,3144-3144[BULt]	((.(((((--((((((((((((&))))))))))))..)))))-))	GGUAACUA--AAUAAAUAGGCU&AGCCUAUUUAUUUUUAGUU-CU	4	0.999941307197992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN7699_c0_g1_3152_TPlot.pdf
TRINITY_DN7699_c0_g1:3154	si_a17	TRINITY_DN7699_c0_g1	3145	3163	3154	-24.30	-17.50	0.720164609053498	5	3-14,3161-3150;17-21,3149-3145	1-2,3163-3162[UP5];15-16,x-x[BULq]	(((((--((((((((((((..&..))))))))))))..)))))	AACUA--AAUAAAUAGGCUAU&AAAGCCUAUUUAUUUUUAGUU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN7699_c0_g1_3154_TPlot.pdf
TRINITY_DN769_c0_g1:462	si_s894	TRINITY_DN769_c0_g1	450	471	462	-29.10	-19.20	0.65979381443299	10	3-13,469-459;15-17,456-454	1-2,471-470[UP5];14-14,458-457[AILt];18-21,453-450[UP3]	....(((..(((((((((((..&..)))))))))))-.)))....	UAUGUGACUGAGAAAGCCUGGA&AAUAGGCUUUCUC-UUCAAUUU	3	0.999999994981852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN769_c0_g1_462_TPlot.pdf
TRINITY_DN769_c0_g1:468	si_s888	TRINITY_DN769_c0_g1	457	476	468	-26.80	-18.60	0.694029850746269	9	1-5,476-472;9-19,469-459	6-8,471-470[AILq];20-21,458-457[UP3]	..(((((((((((..-(((((&)))))...)))))))))))..	CUGAGAAAGCCUGGA-AUUUU&AAAAUAAAUAGGCUUUCUCUU	2	0.92673639062957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN769_c0_g1_468_TPlot.pdf
TRINITY_DN76_c0_g1:1204	si_a785	TRINITY_DN76_c0_g1	1193	1214	1204	-25.90	-17.00	0.656370656370656	11	1-1,1214-1214;3-8,1212-1207;10-21,1204-1193	2-2,1213-1213[SIL];9-9,1206-1205[AILt]	((((((((((((..((((((.(&).))))))-.))))))))))))	GGAGGUGGAAGAUUUGGAGGUG&CUCUUCUA-UUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN76_c0_g1_1204_TPlot.pdf
TRINITY_DN76_c0_g1:1269	si_a68	TRINITY_DN76_c0_g1	1257	1278	1269	-25.40	-17.30	0.681102362204724	9	1-11,1278-1268;12-19,1266-1259	x-x,1267-1267[BULt];20-21,1258-1257[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	ACAGAGACAGCUUUGGAGGAGG&CUUCUUUCAAA-UUGUUUUUCA	3	0.999999993062352	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN76_c0_g1_1269_TPlot.pdf
TRINITY_DN76_c0_g1:1276	si_a61	TRINITY_DN76_c0_g1	1264	1284	1276	-32.90	-21.80	0.662613981762918	8	1-1,1284-1284;3-4,1282-1281;6-18,1280-1268;19-21,1266-1264	2-2,1283-1283[SIL];5-5,x-x[BULq];x-x,1267-1267[BULt]	(((.(((((((((((((-((.(&).)).)))))))))))))-)))	CAGCUUUGGAGGAGGCG-GUGG&CGACUCGCUUCUUUCAAA-UUG	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a61_TRINITY_DN76_c0_g1_1276_TPlot.pdf
TRINITY_DN76_c0_g1:1330	si_a777	TRINITY_DN76_c0_g1	1319	1339	1330	-27.00	-18.80	0.696296296296296	7	1-7,1339-1333;9-16,1331-1324;19-21,1321-1319	8-8,1332-1332[SIL];17-18,1323-1322[SIL]	(((..((((((((.(((((((&))))))).))))))))..)))	GGAUCUAGAGGAGGUGGAUCA&UGAUUCAACUCUUCUAUUUUU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN76_c0_g1_1330_TPlot.pdf
TRINITY_DN76_c0_g1:1332	si_a775	TRINITY_DN76_c0_g1	1321	1341	1332	-27.20	-19.70	0.724264705882353	7.5	2-9,1340-1333;11-18,1331-1324	1-1,1341-1341[UP5];10-10,1332-1332[SIL];19-21,1323-1321[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	AUCUAGAGGAGGUGGAUCAAA&AUUGAUUCAACUCUUCUAUUU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN76_c0_g1_1332_TPlot.pdf
TRINITY_DN76_c0_g1:1370	si_a551	TRINITY_DN76_c0_g1	1359	1379	1370	-31.60	-21.70	0.686708860759494	9	2-5,1378-1375;7-13,1373-1367;15-21,1365-1359	1-1,1379-1379[UP5];6-6,1374-1374[SIL];14-14,1366-1366[SIL]	(((((((.(((((((.((((.&.)))).))))))).)))))))	GGGGAGGAGGAGGAGGAGGUG&AAUCUAUUUCUUUAUCUCCCC	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN76_c0_g1_1370_TPlot.pdf
TRINITY_DN76_c0_g1:1372	si_a553	TRINITY_DN76_c0_g1	1357	1381	1372	-33.70	-22.36	0.663501483679525	17.5	1-11,1381-1371;14-20,1364-1358	12-13,1370-1365[AILt];21-21,1357-1357[UP3]	.(((((((......(((((((((((&)))))))))))----..))))))).	UUGGGGAGGAGGAGGAGGAGGUGGA&UCUAUUUCUUU----AUCUCCCCGU	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN76_c0_g1_1372_TPlot.pdf
TRINITY_DN76_c0_g1:1514	si_a629	TRINITY_DN76_c0_g1	1503	1522	1514	-26.30	-20.20	0.768060836501901	8	1-7,1522-1516;9-21,1515-1503	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	CAAAAGAGUUGGC-UGGUGCG&CGUAUUAUGUCGAUUUUUUUG	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN76_c0_g1_1514_TPlot.pdf
TRINITY_DN76_c0_g1:2731	si_a448	TRINITY_DN76_c0_g1	2720	2740	2731	-25.50	-16.70	0.654901960784314	7	1-5,2740-2736;7-19,2734-2722	6-6,2735-2735[SIL];20-21,2721-2720[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	ACAUAACGGCAAUUGCUUCAU&AUGAGAUAAUUGUUGUUAUAU	3	0.999984480170049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN76_c0_g1_2731_TPlot.pdf
TRINITY_DN76_c0_g1:424	si_a557	TRINITY_DN76_c0_g1	410	433	424	-33.40	-24.70	0.739520958083832	5	1-13,433-421;14-14,419-419;15-21,416-410	x-x,420-420[BULt];x-x,418-417[BULt]	(((((((..(.(((((((((((((&)))))))))))))-)--)))))))	GUUCACGCAGAGGAGAUGAAGAAG&UUUCUUUAUCUCC-C--CGUGAAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN76_c0_g1_424_TPlot.pdf
TRINITY_DN7702_c0_g1:301	si_a405	TRINITY_DN7702_c0_g1	290	310	301	-19.80	-13.10	0.661616161616162	11	5-19,306-292	1-4,310-307[UP5];20-21,291-290[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCAAAUAUAAACAAGAUUCCA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7702_c0_g1_301_TPlot.pdf
TRINITY_DN7704_c0_g1:1569	si_s82	TRINITY_DN7704_c0_g1	1558	1581	1569	-28.90	-20.20	0.698961937716263	8.5	2-7,1580-1575;8-9,1573-1572;10-21,1569-1558	1-1,1581-1581[UP5];x-x,1574-1574[BULt];x-x,1571-1570[BULt]	((((((((((((..((.((((((.&.))))))-))--))))))))))))	AAGAAGAGGAAAUUGGUAGAGAAG&UUUCUUU-CC--UUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7704_c0_g1_1569_TPlot.pdf
TRINITY_DN7704_c0_g1:1590	si_s67	TRINITY_DN7704_c0_g1	1579	1603	1590	-25.60	-17.96	0.7015625	13	1-8,1603-1596;11-21,1589-1579	9-10,1595-1590[AILt]	(((((((((((......((((((((&))))))))----..)))))))))))	AAGAAAAGGAACUUAUUGAAGUUGC&GCAACUUC----UAUUUUUUUUCUU	4	0.999997176745441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN7704_c0_g1_1590_TPlot.pdf
TRINITY_DN7704_c0_g1:1591	si_s66	TRINITY_DN7704_c0_g1	1580	1604	1591	-26.30	-18.46	0.701901140684411	13	1-9,1604-1596;12-21,1589-1580	10-11,1595-1590[AILt]	((((((((((......(((((((((&)))))))))----..))))))))))	AGAAAAGGAACUUAUUGAAGUUGCU&AGCAACUUC----UAUUUUUUUUCU	2	0.993689766352297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN7704_c0_g1_1591_TPlot.pdf
TRINITY_DN7704_c0_g1:1629	si_a493	TRINITY_DN7704_c0_g1	1618	1637	1629	-29.50	-19.60	0.664406779661017	8	1-5,1637-1633;7-13,1632-1626;15-20,1624-1619	6-6,x-x[BULq];14-14,1625-1625[SIL];21-21,1618-1618[UP3]	.((((((.(((((((-(((((&))))).))))))).)))))).	UGGACGGUAGAUGAC-UGUUC&GAAUAUGUCGUUUUUCGUCUU	4	0.999999034889186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN7704_c0_g1_1629_TPlot.pdf
TRINITY_DN7704_c0_g1:513	si_a869	TRINITY_DN7704_c0_g1	502	522	513	-24.80	-16.50	0.665322580645161	11	5-20,518-503	1-4,522-519[UP5];21-21,502-502[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUGUAGCUAGAUUUUUACUAG&UUAUUAAAGAUUUAGUUGCAA	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN7704_c0_g1_513_TPlot.pdf
TRINITY_DN7704_c0_g1:702	si_a841	TRINITY_DN7704_c0_g1	691	711	702	-29.20	-19.40	0.664383561643836	8	2-15,710-697	1-1,711-711[UP5];16-21,696-691[UP3]	......((((((((((((((.&.))))))))))))))......	UGACUCUAGCAACUUCUGUUC&AAAUAGAAGUUGCUAACUUGA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN7704_c0_g1_702_TPlot.pdf
TRINITY_DN7704_c0_g1:704	si_a839	TRINITY_DN7704_c0_g1	693	713	704	-26.50	-19.40	0.732075471698113	10	4-17,710-697	1-3,713-711[UP5];18-21,696-693[UP3]	....((((((((((((((...&...))))))))))))))....	ACUCUAGCAACUUCUGUUCUU&AAAAAUAGAAGUUGCUAACUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN7704_c0_g1_704_TPlot.pdf
TRINITY_DN7704_c0_g1:705	si_a838	TRINITY_DN7704_c0_g1	694	714	705	-26.50	-19.40	0.732075471698113	11	5-18,710-697	1-4,714-711[UP5];19-21,696-694[UP3]	...((((((((((((((....&....))))))))))))))...	CUCUAGCAACUUCUGUUCUUU&AAAAAAUAGAAGUUGCUAACU	2	0.267398748852014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a838_TRINITY_DN7704_c0_g1_705_TPlot.pdf
TRINITY_DN7705_c0_g1:2271	si_s449	TRINITY_DN7705_c0_g1	2260	2284	2271	-23.60	-15.50	0.656779661016949	10	1-8,2284-2277;9-15,2272-2266;18-21,2263-2260	x-x,2276-2273[BULt];16-17,2265-2264[SIL]	((((..(((((((....((((((((&))))))))----)))))))..))))	AGAUUUUUGUUGUGAGAUAUAUAUA&UAUAUAUA----ACAACAAUUAUCU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN7705_c0_g1_2271_TPlot.pdf
TRINITY_DN7706_c0_g1:104	si_a769	TRINITY_DN7706_c0_g1	93	113	104	-26.70	-18.30	0.685393258426966	7.5	1-18,113-96	19-21,95-93[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAAAGUUGGGUUGAUCGAAAA&UUUUUGAUUGAUUCAACUCUU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN7706_c0_g1_104_TPlot.pdf
TRINITY_DN770_c0_g1:710	si_s79	TRINITY_DN770_c0_g1	699	720	710	-26.20	-17.50	0.66793893129771	7	1-9,720-712;12-21,708-699	10-11,711-709[AILt]	((((((((((...(((((((((&)))))))))-..))))))))))	AAGAAGAAAGCUCAAGAAGAAA&UUUUUUCUU-UCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN770_c0_g1_710_TPlot.pdf
TRINITY_DN770_c0_g1:828	si_a638	TRINITY_DN770_c0_g1	818	837	828	-24.40	-16.20	0.663934426229508	6	1-12,837-826;14-16,825-823;18-20,821-819	13-13,x-x[BULq];17-17,822-822[SIL];21-21,818-818[UP3]	.(((.(((-((((((((((((&)))))))))))).))).))).	CGUACUGC-CAAGAAAGUCGA&UCGAUUUUUUUGAGUAAUAUA	3	0.999999712324471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN770_c0_g1_828_TPlot.pdf
TRINITY_DN7712_c0_g1:207	si_a28	TRINITY_DN7712_c0_g1	196	219	207	-30.70	-20.12	0.655374592833876	16	3-9,217-211;12-21,205-196	1-2,219-218[UP5];10-11,210-206[AILt]	((((((((((.....(((((((..&..)))))))---..))))))))))	ACCGGUCUUGAUUUUGCUGAAACU&AUUUUUAGU---UCUAAGACCGGU	2	0.969343840465523	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a28_TRINITY_DN7712_c0_g1_207_TPlot.pdf
TRINITY_DN7712_c0_g1:293	si_s512	TRINITY_DN7712_c0_g1	282	302	293	-24.80	-19.30	0.778225806451613	7.5	3-7,300-296;9-21,294-282	1-2,302-301[UP5];8-8,295-295[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	UCGAGUUAAGGGUUUAGAAGC&AAUUCUAUAUUCUUAAUUCGA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN7712_c0_g1_293_TPlot.pdf
TRINITY_DN7712_c0_g1:294	si_s511	TRINITY_DN7712_c0_g1	283	303	294	-25.50	-17.30	0.67843137254902	9.5	4-8,300-296;10-21,294-283	1-3,303-301[UP5];9-9,295-295[SIL]	((((((((((((.(((((...&...))))).))))))))))))	CGAGUUAAGGGUUUAGAAGCC&CAAUUCUAUAUUCUUAAUUCG	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s511_TRINITY_DN7712_c0_g1_294_TPlot.pdf
TRINITY_DN7718_c0_g1:1824	si_a636	TRINITY_DN7718_c0_g1	1813	1834	1824	-26.30	-17.50	0.665399239543726	9	1-3,1834-1832;4-17,1830-1817	x-x,1831-1831[BULt];18-21,1816-1813[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	CACCGCUCGAAGAAAUUGAACA&UGU-CGAUUUUUUUGAGUAAUA	4	0.999999990527863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN7718_c0_g1_1824_TPlot.pdf
TRINITY_DN7718_c0_g1:2823	si_s90	TRINITY_DN7718_c0_g1	2811	2833	2823	-35.30	-23.00	0.651558073654391	6.5	1-3,2833-2831;4-15,2829-2818;16-19,2816-2813	x-x,2830-2830[BULt];x-x,2817-2817[BULt];20-21,2812-2811[UP3]	..((((.((((((((((((.(((&)))-))))))))))))-))))..	AAGAAGAUGAAGAAGAAGACGAG&CUU-UCUUCUUCUUCG-CUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN7718_c0_g1_2823_TPlot.pdf
TRINITY_DN7718_c0_g1:2824	si_s89	TRINITY_DN7718_c0_g1	2812	2834	2824	-35.30	-26.00	0.736543909348442	5.5	1-4,2834-2831;5-16,2829-2818;17-20,2816-2813	x-x,2830-2830[BULt];x-x,2817-2817[BULt];21-21,2812-2812[UP3]	.((((.((((((((((((.((((&))))-))))))))))))-)))).	AGAAGAUGAAGAAGAAGACGAGG&CCUU-UCUUCUUCUUCG-CUUCG	2	0.983546698368477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7718_c0_g1_2824_TPlot.pdf
TRINITY_DN7718_c0_g1:2827	si_s86	TRINITY_DN7718_c0_g1	2815	2837	2827	-32.90	-23.00	0.699088145896657	7.5	3-7,2835-2831;8-19,2829-2818;20-21,2816-2815	1-2,2837-2836[UP5];x-x,2830-2830[BULt];x-x,2817-2817[BULt]	((.((((((((((((.(((((..&..)))))-))))))))))))-))	AGAUGAAGAAGAAGACGAGGACG&UUUCCUU-UCUUCUUCUUCG-CU	2	0.999999711865971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7718_c0_g1_2827_TPlot.pdf
TRINITY_DN7718_c0_g1:2828	si_s85	TRINITY_DN7718_c0_g1	2817	2838	2828	-33.80	-22.10	0.653846153846154	9.5	4-8,2835-2831;9-20,2829-2818	1-3,2838-2836[UP5];x-x,2830-2830[BULt];21-21,2817-2817[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	AUGAAGAAGAAGACGAGGACGA&CUUUCCUU-UCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN7718_c0_g1_2828_TPlot.pdf
TRINITY_DN7718_c0_g1:2829	si_s84	TRINITY_DN7718_c0_g1	2818	2844	2829	-32.30	-22.60	0.69969040247678	14	1-4,2844-2841;5-9,2835-2831;10-20,2829-2819	x-x,2840-2836[BULt];x-x,2830-2830[BULt];21-21,2818-2818[UP3]	.(((((((((((.(((((.....((((&))))-----)))))-))))))))))).	UGAAGAAGAAGACGAGGACGAUGAAGA&UCUU-----UCCUU-UCUUCUUCUUCG	4	0.999999999985793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN7718_c0_g1_2829_TPlot.pdf
TRINITY_DN7718_c0_g1:2833	si_s81	TRINITY_DN7718_c0_g1	2821	2844	2833	-28.90	-19.38	0.670588235294118	12	1-5,2844-2840;8-12,2835-2831;13-21,2829-2821	6-7,2839-2836[AILt];x-x,2830-2830[BULt]	(((((((((.(((((....(((((&)))))--..)))))-)))))))))	AGAAGAAGACGAGGACGAUGAAGA&UUUUC--UUUCCUU-UCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN7718_c0_g1_2833_TPlot.pdf
TRINITY_DN7718_c0_g1:2842	si_a325	TRINITY_DN7718_c0_g1	2829	2851	2842	-25.90	-18.00	0.694980694980695	10.5	4-14,2848-2838;15-21,2835-2829	1-3,2851-2849[UP5];x-x,2837-2836[BULt]	(((((((..(((((((((((...&...)))))))))))--)))))))	ACGAGGACGAUGAAGAAGUCGAA&CAUGAUUUUUUUAU--UCCUUGU	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN7718_c0_g1_2842_TPlot.pdf
TRINITY_DN7718_c0_g1:2854	si_s89	TRINITY_DN7718_c0_g1	2842	2864	2854	-35.30	-23.40	0.662889518413598	7	1-5,2864-2860;6-7,2858-2857;9-16,2855-2848;17-20,2846-2843	x-x,2859-2859[BULt];8-8,2856-2856[SIL];x-x,2847-2847[BULt];21-21,2842-2842[UP3]	.((((.((((((((.((.(((((&)))))-)).))))))))-)))).	AGAAGUCGAAGAAGUAGAAGAGG&CCUUU-CUUCUUCUUCG-CUUCG	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7718_c0_g1_2854_TPlot.pdf
TRINITY_DN7718_c0_g1:2855	si_s88	TRINITY_DN7718_c0_g1	2843	2865	2855	-34.80	-24.60	0.706896551724138	6	1-6,2865-2860;7-8,2858-2857;10-17,2855-2848;18-21,2846-2843	x-x,2859-2859[BULt];9-9,2856-2856[SIL];x-x,2847-2847[BULt]	((((.((((((((.((.((((((&))))))-)).))))))))-))))	GAAGUCGAAGAAGUAGAAGAGGA&UCCUUU-CUUCUUCUUCG-CUUC	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7718_c0_g1_2855_TPlot.pdf
TRINITY_DN7718_c0_g1:2857	si_s86	TRINITY_DN7718_c0_g1	2845	2867	2857	-32.90	-21.60	0.656534954407295	7	2-8,2866-2860;9-10,2858-2857;12-19,2855-2848;20-21,2846-2845	1-1,2867-2867[UP5];x-x,2859-2859[BULt];11-11,2856-2856[SIL];x-x,2847-2847[BULt]	((.((((((((.((.(((((((.&.)))))))-)).))))))))-))	AGUCGAAGAAGUAGAAGAGGAAG&UUUCCUUU-CUUCUUCUUCG-CU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7718_c0_g1_2857_TPlot.pdf
TRINITY_DN7718_c0_g1:2859	si_s899	TRINITY_DN7718_c0_g1	2848	2868	2859	-28.30	-18.50	0.653710247349823	8.5	2-11,2867-2858;13-17,2856-2852	1-1,2868-2868[UP5];12-12,2857-2857[SIL];18-21,2851-2848[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	CGAAGAAGUAGAAGAGGAAGA&GCUUUCUCUUCAAUUUCAAUU	4	0.999999999997917	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN7718_c0_g1_2859_TPlot.pdf
TRINITY_DN7718_c0_g1:2862	si_a785	TRINITY_DN7718_c0_g1	2851	2872	2862	-25.90	-17.30	0.667953667953668	9	2-7,2871-2866;9-20,2863-2852	1-1,2872-2872[UP5];8-8,2865-2864[AILt];21-21,2851-2851[UP3]	.((((((((((((..((((((.&.))))))-.)))))))))))).	AGAAGUAGAAGAGGAAGAAGAA&CUCUUCU-AUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7718_c0_g1_2862_TPlot.pdf
TRINITY_DN7718_c0_g1:2865	si_s78	TRINITY_DN7718_c0_g1	2851	2874	2865	-26.20	-18.20	0.694656488549618	7.5	1-12,2874-2863;13-16,2861-2858;17-21,2855-2851	x-x,2862-2862[BULt];x-x,2857-2856[BULt]	(((((..((((.((((((((((((&))))))))))))-))))--)))))	AGAAGUAGAAGAGGAAGAAGAAGA&UUUUUUUCUUUC-CUUU--CUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7718_c0_g1_2865_TPlot.pdf
TRINITY_DN7718_c0_g1:2870	si_s73	TRINITY_DN7718_c0_g1	2858	2880	2870	-24.00	-16.40	0.683333333333333	8	1-3,2880-2878;5-17,2875-2863;18-21,2861-2858	4-4,2877-2876[AILt];x-x,2862-2862[BULt]	((((.(((((((((((((..(((&)))-.)))))))))))))-))))	GAAGAGGAAGAAGAAGAAGAAGA&UCU-AUUUUUUUUCUUUC-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7718_c0_g1_2870_TPlot.pdf
TRINITY_DN7718_c0_g1:2872	si_s68	TRINITY_DN7718_c0_g1	2861	2882	2872	-23.10	-15.70	0.67965367965368	8.5	1-2,2882-2881;4-8,2879-2875;10-21,2872-2861	3-3,2880-2880[SIL];9-9,2874-2873[AILt]	((((((((((((..(((((.((&)).)))))-.))))))))))))	GAGGAAGAAGAAGAAGAAGAUG&CAACUUCU-AUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7718_c0_g1_2872_TPlot.pdf
TRINITY_DN7719_c0_g1:622	si_a68	TRINITY_DN7719_c0_g1	609	631	622	-25.40	-16.90	0.665354330708661	8	1-8,631-624;11-13,621-619;14-21,616-609	9-10,623-622[SIL];x-x,618-617[BULt]	((((((((..(((..((((((((&))))))))..)))--))))))))	UGAAGAACCUGAUGAGGAAGAAG&CUUCUUUCAAAUU--GUUUUUCA	4	0.999999999998439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7719_c0_g1_622_TPlot.pdf
TRINITY_DN771_c0_g1:4400	si_s373	TRINITY_DN771_c0_g1	4389	4409	4400	-47.30	-31.30	0.661733615221987	8.5	3-8,4407-4402;11-21,4399-4389	1-2,4409-4408[UP5];9-10,4401-4400[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	GGUGGAUGCGCUUGCGAUCCU&CCGAUCGCUCGCGUGUCCGCC	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s373_TRINITY_DN771_c0_g1_4400_TPlot.pdf
TRINITY_DN771_c0_g1:7153	si_a404	TRINITY_DN771_c0_g1	7142	7163	7153	-21.70	-15.10	0.695852534562212	4.5	1-6,7163-7158;7-15,7156-7148;17-20,7146-7143	x-x,7157-7157[BULt];16-16,7147-7147[SIL];21-21,7142-7142[UP3]	.((((.(((((((((.((((((&))))))-))))))))).)))).	AAAGUUUAAACAAAAUCAAUUC&GAAUUG-UUUUGUUUAUAUUUA	3	0.999999987005548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN771_c0_g1_7153_TPlot.pdf
TRINITY_DN771_c0_g1:7393	si_s75	TRINITY_DN771_c0_g1	7382	7402	7393	-24.00	-16.40	0.683333333333333	10	1-4,7402-7399;7-7,7396-7396;10-21,7393-7382	5-6,7398-7397[SIL];8-9,7395-7394[SIL]	((((((((((((..(..((((&))))..)..))))))))))))	AGAGGGGAAGGAUUAUCAAUA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN771_c0_g1_7393_TPlot.pdf
TRINITY_DN771_c0_g1:8732	si_a74	TRINITY_DN771_c0_g1	8721	8741	8732	-22.20	-14.60	0.657657657657658	13	7-21,8735-8721	1-6,8741-8736[UP5]	(((((((((((((((......&......)))))))))))))))	UAAUAAUGAGAAACGCUUGCA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999999987955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN771_c0_g1_8732_TPlot.pdf
TRINITY_DN771_c1_g1:582	si_a869	TRINITY_DN771_c1_g1	571	591	582	-24.80	-17.80	0.717741935483871	9	1-6,591-586;9-19,583-573	7-8,585-584[SIL];20-21,572-571[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	AGGCAGCUGAAUUGAUAGUAA&UUAUUAAAGAUUUAGUUGCAA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN771_c1_g1_582_TPlot.pdf
TRINITY_DN771_c2_g1:76	si_a636	TRINITY_DN771_c2_g1	65	85	76	-26.30	-17.40	0.661596958174905	9.5	2-4,84-82;7-21,79-65	1-1,85-85[UP5];5-6,81-80[SIL]	(((((((((((((((..(((.&.)))..)))))))))))))))	UAUUACUCGGAGAAGAAGGCU&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999220709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN771_c2_g1_76_TPlot.pdf
TRINITY_DN7720_c0_g1:227	si_s69	TRINITY_DN7720_c0_g1	216	236	227	-23.40	-15.50	0.662393162393162	12.5	3-9,234-228;12-21,225-216	1-2,236-235[UP5];10-11,227-226[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	GGAGGGGGAAUCGUAGGGGCA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7720_c0_g1_227_TPlot.pdf
TRINITY_DN7721_c0_g1:1031	si_s315	TRINITY_DN7721_c0_g1	1020	1041	1031	-31.60	-21.10	0.667721518987342	5.5	1-8,1041-1034;9-16,1032-1025;18-21,1023-1020	x-x,1033-1033[BULt];17-17,1024-1024[SIL]	((((.((((((((.((((((((&))))))))-)))))))).))))	UUGUUAUAAGAGGUGAUAGAAU&AUUCUGUC-CUUCUUGUUACAA	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN7721_c0_g1_1031_TPlot.pdf
TRINITY_DN7721_c0_g1:959	si_a404	TRINITY_DN7721_c0_g1	948	968	959	-21.70	-14.90	0.686635944700461	7	1-9,968-960;11-12,958-957;14-20,955-949	10-10,959-959[SIL];13-13,956-956[SIL];21-21,948-948[UP3]	.(((((((.((.(((((((((&))))))))).)).))))))).	AAGAUAUGUACUGAGCAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999939736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN7721_c0_g1_959_TPlot.pdf
TRINITY_DN7726_c0_g1:45	si_s379	TRINITY_DN7726_c0_g1	34	58	45	-42.50	-28.60	0.672941176470588	13	1-6,58-53;7-18,48-37	x-x,52-49[BULt];19-21,36-34[UP3]	...((((((((((((....((((((&))))))----))))))))))))...	AGAUAGGGCGGAUACCCUAGCGAGU&GCUCGC----GUGUCCGCCUUACAU	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s379_TRINITY_DN7726_c0_g1_45_TPlot.pdf
TRINITY_DN7727_c0_g1:584	si_s140	TRINITY_DN7727_c0_g1	573	592	584	-31.10	-22.00	0.707395498392283	3	1-5,592-588;7-21,587-573	6-6,x-x[BULq]	(((((((((((((((-(((((&))))).)))))))))))))))	UUUUUUGGGUUUUUG-UUGAU&AUCAAUCAAAAACCCAAAGGA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s140_TRINITY_DN7727_c0_g1_584_TPlot.pdf
TRINITY_DN7727_c0_g1:585	si_s139	TRINITY_DN7727_c0_g1	574	593	585	-30.10	-20.90	0.694352159468438	4	2-6,592-588;8-21,587-574	1-1,593-593[UP5];7-7,x-x[BULq]	((((((((((((((-(((((.&.))))).))))))))))))))	UUUUUGGGUUUUUG-UUGAUA&AAUCAAUCAAAAACCCAAAGG	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s139_TRINITY_DN7727_c0_g1_585_TPlot.pdf
TRINITY_DN7727_c0_g1:586	si_s138	TRINITY_DN7727_c0_g1	575	594	586	-29.70	-20.40	0.686868686868687	5.5	3-7,592-588;9-21,587-575	1-2,594-593[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	UUUUGGGUUUUUG-UUGAUAU&GAAUCAAUCAAAAACCCAAAG	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s138_TRINITY_DN7727_c0_g1_586_TPlot.pdf
TRINITY_DN7727_c0_g1:587	si_s137	TRINITY_DN7727_c0_g1	576	595	587	-28.80	-19.90	0.690972222222222	7	4-8,592-588;10-21,587-576	1-3,595-593[UP5];9-9,x-x[BULq]	((((((((((((-(((((...&...))))).))))))))))))	UUUGGGUUUUUG-UUGAUAUU&UGAAUCAAUCAAAAACCCAAA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s137_TRINITY_DN7727_c0_g1_587_TPlot.pdf
TRINITY_DN7728_c1_g1:24	si_s717	TRINITY_DN7728_c1_g1	13	35	24	-30.10	-19.68	0.653820598006644	12	1-8,35-28;11-19,23-15	9-10,27-24[AILt];20-21,14-13[UP3]	..(((((((((....((((((((&))))))))--..)))))))))..	CCGAUGAUGUCGUUCUCCUUGUU&AACAGGGA--AAGAUAUUAUCUA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN7728_c1_g1_24_TPlot.pdf
TRINITY_DN7728_c4_g1:245	si_a737	TRINITY_DN7728_c4_g1	234	254	245	-38.60	-26.80	0.694300518134715	11	3-4,252-251;6-17,249-238	1-2,254-253[UP5];5-5,250-250[SIL];18-21,237-234[UP3]	....((((((((((((.((..&..)).))))))))))))....	GUGUUGGCCAGGGGUGUGGUU&AUCUUUACCCCUGGCCAUGAA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a737_TRINITY_DN7728_c4_g1_245_TPlot.pdf
TRINITY_DN7728_c4_g1:263	si_s822	TRINITY_DN7728_c4_g1	252	273	263	-22.30	-14.80	0.663677130044843	11.5	2-8,272-266;11-21,262-252	1-1,273-273[UP5];9-10,265-263[AILt]	(((((((((((...(((((((.&.)))))))-..)))))))))))	GUUGUUUUUCAAGGGUUGGGGU&UUCUUAAU-AAUGAAAAACAAU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN7728_c4_g1_263_TPlot.pdf
TRINITY_DN7728_c9_g1:238	si_a755	TRINITY_DN7728_c9_g1	227	251	238	-34.90	-23.80	0.681948424068768	15	1-6,251-246;7-17,241-231	x-x,245-242[BULt];18-21,230-227[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CUCCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN7728_c9_g1_238_TPlot.pdf
TRINITY_DN7728_c9_g1:239	si_a754	TRINITY_DN7728_c9_g1	228	252	239	-34.60	-24.80	0.716763005780347	14	1-7,252-246;8-18,241-231	x-x,245-242[BULt];19-21,230-228[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UCCGGACCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN7728_c9_g1_239_TPlot.pdf
TRINITY_DN7728_c9_g1:240	si_a753	TRINITY_DN7728_c9_g1	229	253	240	-33.10	-24.80	0.749244712990937	14	2-8,252-246;9-19,241-231	1-1,253-253[UP5];x-x,245-242[BULt];20-21,230-229[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	CCGGACCCAAGGGUCCGGGGUUCAA&AUGAACCU----CCUUUGGGUUUUU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN7728_c9_g1_240_TPlot.pdf
TRINITY_DN7728_c9_g1:241	si_a752	TRINITY_DN7728_c9_g1	230	254	241	-34.80	-24.80	0.71264367816092	15	3-9,252-246;10-20,241-231	1-2,254-253[UP5];x-x,245-242[BULt];21-21,230-230[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	CGGACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN7728_c9_g1_241_TPlot.pdf
TRINITY_DN772_c0_g1:1389	si_s810	TRINITY_DN772_c0_g1	1377	1399	1389	-27.90	-18.30	0.655913978494624	7	1-6,1399-1394;7-14,1392-1385;15-20,1383-1378	x-x,1393-1393[BULt];x-x,1384-1384[BULt];21-21,1377-1377[UP3]	.((((((.((((((((.((((((&))))))-))))))))-)))))).	AAUUAAGAAAGAGGUACAUGGAG&CUUCGU-UACCUUUU-CUUAAUA	4	0.999999999796303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN772_c0_g1_1389_TPlot.pdf
TRINITY_DN772_c0_g1:1684	si_s255	TRINITY_DN772_c0_g1	1673	1694	1684	-29.40	-20.40	0.693877551020408	6.5	1-3,1694-1692;4-13,1690-1681;15-19,1679-1675	x-x,1691-1691[BULt];14-14,1680-1680[SIL];20-21,1674-1673[UP3]	..(((((.((((((((((.(((&)))-)))))))))).)))))..	AAUUGAGCGAUAUAUCGGAGGA&UUC-CCGAUAUAUUACUCAAAA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN772_c0_g1_1684_TPlot.pdf
TRINITY_DN772_c0_g1:1685	si_s254	TRINITY_DN772_c0_g1	1674	1695	1685	-29.40	-21.10	0.717687074829932	5.5	1-4,1695-1692;5-14,1690-1681;16-20,1679-1675	x-x,1691-1691[BULt];15-15,1680-1680[SIL];21-21,1674-1674[UP3]	.(((((.((((((((((.((((&))))-)))))))))).))))).	AUUGAGCGAUAUAUCGGAGGAA&UUUC-CCGAUAUAUUACUCAAA	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN772_c0_g1_1685_TPlot.pdf
TRINITY_DN772_c0_g1:1686	si_s253	TRINITY_DN772_c0_g1	1675	1696	1686	-29.50	-20.90	0.708474576271186	5.5	2-5,1695-1692;6-15,1690-1681;17-21,1679-1675	1-1,1696-1696[UP5];x-x,1691-1691[BULt];16-16,1680-1680[SIL]	(((((.((((((((((.((((.&.))))-)))))))))).)))))	UUGAGCGAUAUAUCGGAGGAAC&AUUUC-CCGAUAUAUUACUCAA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN772_c0_g1_1686_TPlot.pdf
TRINITY_DN772_c0_g1:1781	si_a787	TRINITY_DN772_c0_g1	1770	1790	1781	-26.30	-20.00	0.760456273764259	6	1-18,1790-1773	19-21,1772-1770[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUUAAGAUGGAAGAAUGGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN772_c0_g1_1781_TPlot.pdf
TRINITY_DN772_c0_g1:1782	si_a786	TRINITY_DN772_c0_g1	1771	1791	1782	-26.60	-20.20	0.759398496240601	5.5	1-19,1791-1773	20-21,1772-1771[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUAAGAUGGAAGAAUGGAAGG&UCUUCUAUUUUUCUAUUUUCC	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN772_c0_g1_1782_TPlot.pdf
TRINITY_DN772_c0_g1:1853	si_a628	TRINITY_DN772_c0_g1	1840	1862	1853	-27.10	-18.80	0.693726937269373	9	1-2,1862-1861;4-11,1859-1852;12-19,1849-1842	3-3,1860-1860[SIL];x-x,1851-1850[BULt];20-21,1841-1840[UP3]	..((((((((..((((((((.((&)).))))))))--))))))))..	AUGAGAAUCGUCACAUAAUAGGC&GCGUAUUAUGU--CGAUUUUUUU	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN772_c0_g1_1853_TPlot.pdf
TRINITY_DN772_c0_g1:3272	si_s68	TRINITY_DN772_c0_g1	3261	3282	3272	-23.10	-16.30	0.705627705627706	8	1-7,3282-3276;8-15,3274-3267;17-21,3265-3261	x-x,3275-3275[BULt];16-16,3266-3266[SIL]	(((((.((((((((.(((((((&)))))))-)))))))).)))))	GGAGAUAAAAAGUGUGGGGUUG&CAACUUC-UAUUUUUUUUCUUU	2	0.999999105714305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN772_c0_g1_3272_TPlot.pdf
TRINITY_DN772_c0_g1:3303	si_s70	TRINITY_DN772_c0_g1	3292	3313	3303	-25.80	-18.20	0.705426356589147	7.5	1-6,3313-3308;8-20,3305-3293	7-7,3307-3306[AILt];21-21,3292-3292[UP3]	.(((((((((((((..((((((&))))))-.))))))))))))).	CGAAAGAAGAAGAAAAAGAGGU&ACUUCU-AUUUUUUUUCUUUCC	4	0.999999999989789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN772_c0_g1_3303_TPlot.pdf
TRINITY_DN772_c0_g1:3358	si_s88	TRINITY_DN772_c0_g1	3347	3367	3358	-34.80	-23.30	0.669540229885058	5.5	1-9,3367-3359;11-15,3357-3353;17-21,3351-3347	10-10,3358-3358[SIL];16-16,3352-3352[SIL]	(((((.(((((.(((((((((&))))))))).))))).)))))	GAAGCCAGGGAAAAGAGAGGA&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN772_c0_g1_3358_TPlot.pdf
TRINITY_DN772_c1_g1:779	si_a451	TRINITY_DN772_c1_g1	767	788	779	-23.60	-15.50	0.656779661016949	6.5	1-17,788-772;18-20,770-768	x-x,771-771[BULt];21-21,767-767[UP3]	.(((.(((((((((((((((((&)))))))))))))))))-))).	GGUGCUAUAGCAGUAAUUGUCU&AGAUAAUUGUUGUUAUA-UAUA	2	0.998922310314455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN772_c1_g1_779_TPlot.pdf
TRINITY_DN772_c1_g1:780	si_a450	TRINITY_DN772_c1_g1	769	789	780	-25.20	-16.50	0.654761904761905	7	1-18,789-772	19-21,771-769[UP3]	...((((((((((((((((((&))))))))))))))))))...	UGCUAUAGCAGUAAUUGUCUU&GAGAUAAUUGUUGUUAUAUAU	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN772_c1_g1_780_TPlot.pdf
TRINITY_DN7733_c0_g1:2936	si_a153	TRINITY_DN7733_c0_g1	2925	2945	2936	-28.70	-19.16	0.667595818815331	14	1-5,2945-2941;10-19,2936-2927	6-9,2940-2937[SIL];20-21,2926-2925[UP3]	..((((((((((....(((((&)))))....))))))))))..	UGGGAUUGGCCUCAUUGCGGC&GUUGUUUUAAGGUCAAUCUAU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN7733_c0_g1_2936_TPlot.pdf
TRINITY_DN7733_c0_g1:2937	si_a152	TRINITY_DN7733_c0_g1	2926	2946	2937	-29.20	-19.36	0.663013698630137	14	2-6,2945-2941;11-20,2936-2927	1-1,2946-2946[UP5];7-10,2940-2937[SIL];21-21,2926-2926[UP3]	.((((((((((....(((((.&.)))))....)))))))))).	GGGAUUGGCCUCAUUGCGGCU&UGUUGUUUUAAGGUCAAUCUA	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN7733_c0_g1_2937_TPlot.pdf
TRINITY_DN7733_c0_g1:2938	si_a151	TRINITY_DN7733_c0_g1	2927	2947	2938	-28.90	-18.96	0.656055363321799	15	3-7,2945-2941;12-21,2936-2927	1-2,2947-2946[UP5];8-11,2940-2937[SIL]	((((((((((....(((((..&..)))))....))))))))))	GGAUUGGCCUCAUUGCGGCUG&UUGUUGUUUUAAGGUCAAUCU	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN7733_c0_g1_2938_TPlot.pdf
TRINITY_DN7733_c0_g1:2988	si_a414	TRINITY_DN7733_c0_g1	2976	2997	2988	-18.10	-12.10	0.668508287292818	8	1-6,2997-2992;8-16,2990-2982;17-21,2980-2976	7-7,2991-2991[SIL];x-x,2981-2981[BULt]	(((((.(((((((((.((((((&)))))).)))))))))-)))))	UGUAUCUUGUUUGAACGUGAGC&GUUUAUAUUUAAAUAA-AUAUA	3	0.999992042848032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN7733_c0_g1_2988_TPlot.pdf
TRINITY_DN7733_c0_g1:3211	si_a553	TRINITY_DN7733_c0_g1	3202	3218	3211	-33.70	-22.80	0.676557863501484	10.5	1-8,3218-3211;13-21,3210-3202	9-12,x-x[BULq]	(((((((((----((((((((&))))))))....)))))))))	GCGGGGGGA----GAAAUGGG&UCUAUUUCUUUAUCUCCCCGU	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN7733_c0_g1_3211_TPlot.pdf
TRINITY_DN7733_c0_g1:3356	si_s485	TRINITY_DN7733_c0_g1	3345	3365	3356	-18.10	-12.00	0.662983425414365	10	1-14,3365-3352	15-21,3351-3345[UP3]	.......((((((((((((((&)))))))))))))).......	UACCGAAUUAGAUGAGUAUAG&CUAUAUUUAUUUAAAUAUAAA	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN7733_c0_g1_3356_TPlot.pdf
TRINITY_DN7733_c0_g1:3443	si_s800	TRINITY_DN7733_c0_g1	3431	3451	3443	-29.70	-20.50	0.69023569023569	7	1-7,3451-3445;9-17,3444-3436;19-20,3433-3432	8-8,x-x[BULq];18-18,3435-3434[AILt];21-21,3431-3431[UP3]	.((..(((((((((-(((((((&))))))).)))))))))-.)).	CGGAGGACGGAGAU-GAAUACG&CGUAUUUUAUCUUCGUU-ACCU	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN7733_c0_g1_3443_TPlot.pdf
TRINITY_DN7733_c0_g1:680	si_a145	TRINITY_DN7733_c0_g1	669	689	680	-28.10	-18.80	0.669039145907473	10.5	4-17,686-673;19-21,671-669	1-3,689-687[UP5];18-18,672-672[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	ACUGUGGAACAGCAGCGGCGC&UAAUCGUUGUUGUUUUAAGGU	4	0.999918337504879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN7733_c0_g1_680_TPlot.pdf
TRINITY_DN7735_c0_g1:513	si_a820	TRINITY_DN7735_c0_g1	502	522	513	-28.20	-19.10	0.677304964539007	6.5	1-17,522-506	18-21,505-502[UP3]	....(((((((((((((((((&)))))))))))))))))....	CUUCUCUUUCUUUUUUUCUUU&GAAGAAGAAAGGAAAGAAAAA	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN7735_c0_g1_513_TPlot.pdf
TRINITY_DN7736_c0_g1:2395	si_a627	TRINITY_DN7736_c0_g1	2384	2403	2395	-29.50	-19.30	0.654237288135593	6.5	1-2,2403-2402;4-20,2401-2385	3-3,x-x[BULq];21-21,2384-2384[UP3]	.(((((((((((((((((-((&)).))))))))))))))))).	UGGAAGUCGAUAUAAUAU-CC&GGCGUAUUAUGUCGAUUUUUU	4	0.999999920598482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN7736_c0_g1_2395_TPlot.pdf
TRINITY_DN7736_c0_g1:2396	si_a626	TRINITY_DN7736_c0_g1	2385	2404	2396	-30.20	-20.40	0.675496688741722	5.5	1-3,2404-2402;5-21,2401-2385	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	GGAAGUCGAUAUAAUAU-CCU&AGGCGUAUUAUGUCGAUUUUU	4	0.99846879570967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN7736_c0_g1_2396_TPlot.pdf
TRINITY_DN7736_c0_g1:2445	si_s86	TRINITY_DN7736_c0_g1	2433	2456	2445	-32.90	-23.90	0.726443768996961	7	1-9,2456-2448;10-19,2445-2436;20-21,2434-2433	x-x,2447-2446[BULt];x-x,2435-2435[BULt]	((.((((((((((..(((((((((&)))))))))--))))))))))-))	GGACGAAGAGGAAUUGGAAGGAAA&UUUCCUUUC--UUCUUCUUCG-CU	4	0.9999970577487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7736_c0_g1_2445_TPlot.pdf
TRINITY_DN7736_c0_g2:1316	si_a70	TRINITY_DN7736_c0_g2	1305	1325	1316	-23.90	-17.20	0.719665271966527	8	1-6,1325-1320;9-18,1317-1308	7-8,1319-1318[SIL];19-21,1307-1305[UP3]	...((((((((((..((((((&))))))..))))))))))...	GCAGAAAAACAAUAGGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.994216265032172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN7736_c0_g2_1316_TPlot.pdf
TRINITY_DN7736_c0_g2:1328	si_a410	TRINITY_DN7736_c0_g2	1317	1337	1328	-17.80	-11.80	0.662921348314607	9.5	1-14,1337-1324	15-21,1323-1317[UP3]	.......((((((((((((((&)))))))))))))).......	UAGGGAAGAAUAUAAACGGAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7736_c0_g2_1328_TPlot.pdf
TRINITY_DN7736_c0_g2:2947	si_a631	TRINITY_DN7736_c0_g2	2936	2956	2947	-25.70	-16.90	0.657587548638132	6.5	1-16,2956-2941;18-19,2939-2938	17-17,2940-2940[SIL];20-21,2937-2936[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	UACGUGGAAGUCGAUAUAAUA&UAUUAUGUCGAUUUUUUUGAG	4	0.99999997052082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN7736_c0_g2_2947_TPlot.pdf
TRINITY_DN7736_c0_g2:2952	si_a626	TRINITY_DN7736_c0_g2	2941	2960	2952	-30.20	-20.40	0.675496688741722	5.5	1-3,2960-2958;5-21,2957-2941	4-4,x-x[BULq]	(((((((((((((((((-(((&))).)))))))))))))))))	GGAAGUCGAUAUAAUAU-CCU&AGGCGUAUUAUGUCGAUUUUU	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN7736_c0_g2_2952_TPlot.pdf
TRINITY_DN7736_c0_g2:3002	si_s82	TRINITY_DN7736_c0_g2	2991	3012	3002	-28.90	-22.50	0.778546712802768	7.5	1-9,3012-3004;11-19,3001-2993	10-10,3003-3002[AILt];20-21,2992-2991[UP3]	..(((((((((..(((((((((&)))))))))-.)))))))))..	ACGAAGAGGAAUUGGAAGGAAA&UUUCUUUCC-UUUCUUCUUCUU	4	0.999990258141989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7736_c0_g2_3002_TPlot.pdf
TRINITY_DN7736_c0_g2:808	si_a555	TRINITY_DN7736_c0_g2	797	817	808	-33.70	-22.50	0.667655786350148	14	7-19,811-799	1-6,817-812[UP5];20-21,798-797[UP3]	..(((((((((((((......&......)))))))))))))..	GAACGGGGAGAUAGAUUAUAC&UAUUUCUUUAUCUCCCCGUGA	4	0.997096352592114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN7736_c0_g2_808_TPlot.pdf
TRINITY_DN7737_c0_g1:1795	si_a800	TRINITY_DN7737_c0_g1	1784	1803	1795	-33.70	-22.00	0.652818991097923	6	2-8,1802-1796;10-13,1795-1792;15-17,1790-1788;19-21,1786-1784	1-1,1803-1803[UP5];9-9,x-x[BULq];14-14,1791-1791[SIL];18-18,1787-1787[SIL]	(((.(((.((((-(((((((.&.))))))).)))).))).)))	CUUGGCUGCGGA-UGGAGAAG&AUUUUCCAAUCCGAAGCGAAG	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN7737_c0_g1_1795_TPlot.pdf
TRINITY_DN7737_c0_g1:2446	si_a425	TRINITY_DN7737_c0_g1	2444	2455	2446	-30.80	-20.50	0.665584415584416	2	11-21,2454-2444	10-10,2455-2455[SIL]	(((((((((((.&.)))))))))))	CCGACGGAUCCC&AAUAAAUAUAGG	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN7737_c0_g1_2446_TPlot.pdf
TRINITY_DN7737_c0_g1:2450	si_a430	TRINITY_DN7737_c0_g1	2439	2459	2450	-33.70	-22.70	0.673590504451039	13.5	6-17,2454-2443	1-5,2459-2455[UP5];18-21,2442-2439[UP3]	....((((((((((((.....&.....))))))))))))....	GCCCUCCGACGGAUCCCCUUG&AUAUAGGAUCCGUUGGAUAUG	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN7737_c0_g1_2450_TPlot.pdf
TRINITY_DN7737_c0_g1:686	si_s78	TRINITY_DN7737_c0_g1	675	695	686	-26.20	-18.40	0.702290076335878	11	4-10,692-686;12-21,684-675	1-3,695-693[UP5];11-11,685-685[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GGAGGAGGGGCAAGGGAACUG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN7737_c0_g1_686_TPlot.pdf
TRINITY_DN7737_c0_g2:372	si_a425	TRINITY_DN7737_c0_g2	370	381	372	-30.80	-20.50	0.665584415584416	2	11-21,380-370	10-10,381-381[SIL]	(((((((((((.&.)))))))))))	CCGACGGAUCCC&AAUAAAUAUAGG	2	0.837509823214417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN7737_c0_g2_372_TPlot.pdf
TRINITY_DN7737_c0_g2:375	si_a431	TRINITY_DN7737_c0_g2	364	384	375	-34.50	-22.70	0.657971014492754	12.5	5-16,380-369	1-4,384-381[UP5];17-21,368-364[UP3]	.....((((((((((((....&....)))))))))))).....	AGCCCUCCGACGGAUCCCCUU&UAUAGGAUCCGUUGGAUAUGA	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a431_TRINITY_DN7737_c0_g2_375_TPlot.pdf
TRINITY_DN7737_c0_g2:376	si_a430	TRINITY_DN7737_c0_g2	365	385	376	-33.70	-22.70	0.673590504451039	13.5	6-17,380-369	1-5,385-381[UP5];18-21,368-365[UP3]	....((((((((((((.....&.....))))))))))))....	GCCCUCCGACGGAUCCCCUUG&AUAUAGGAUCCGUUGGAUAUG	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN7737_c0_g2_376_TPlot.pdf
TRINITY_DN7739_c0_g1:2706	si_s327	TRINITY_DN7739_c0_g1	2692	2715	2706	-28.70	-18.90	0.658536585365854	10	2-10,2714-2706;11-12,2702-2701;15-20,2698-2693	1-1,2715-2715[UP5];x-x,2705-2703[BULt];13-14,2700-2699[SIL];21-21,2692-2692[UP3]	.((((((..((...(((((((((.&.)))))))))---))..)))))).	CGAAUCGGUUGAGAUUUGUAACAU&UUGUUACAAA---CAUACGAUUCA	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s327_TRINITY_DN7739_c0_g1_2706_TPlot.pdf
TRINITY_DN7739_c0_g1:4193	si_a778	TRINITY_DN7739_c0_g1	4182	4203	4193	-28.30	-20.10	0.710247349823322	6	1-9,4203-4195;10-19,4193-4184;21-21,4182-4182	x-x,4194-4194[BULt];20-20,4183-4183[SIL]	(.((((((((((.(((((((((&)))))))))-)))))))))).)	GUGGGAUAGAAGAAGUUGAGUU&GAUUCAACU-CUUCUAUUUUUC	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN7739_c0_g1_4193_TPlot.pdf
TRINITY_DN7739_c0_g1:5174	si_a408	TRINITY_DN7739_c0_g1	5164	5183	5174	-20.10	-14.70	0.731343283582089	7.5	1-10,5183-5174;12-20,5173-5165	11-11,x-x[BULq];21-21,5164-5164[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	GGUUUAAAUA-AGGCAAGGCA&UGUUUUGUUUAUAUUUAAAUA	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN7739_c0_g1_5174_TPlot.pdf
TRINITY_DN7739_c1_g2:122	si_s436	TRINITY_DN7739_c1_g2	111	131	122	-19.60	-14.90	0.760204081632653	8.5	2-5,130-127;8-20,124-112	1-1,131-131[UP5];6-7,126-125[SIL];21-21,111-111[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	AAUAUGUGGUAUGUUUUUGUA&AAUAAUUACAUAUUAUAUAUA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN7739_c1_g2_122_TPlot.pdf
TRINITY_DN773_c0_g1:1098	si_a681	TRINITY_DN773_c0_g1	1087	1107	1098	-33.80	-22.30	0.659763313609467	14.5	8-16,1100-1092;18-21,1090-1087	1-7,1107-1101[UP5];17-17,1091-1091[SIL]	((((.(((((((((.......&.......))))))))).))))	UGUUGGAGACCGCGGUGCAGA&UUAUUCACGCGGUUUCGAACA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a681_TRINITY_DN773_c0_g1_1098_TPlot.pdf
TRINITY_DN773_c0_g1:1157	si_s675	TRINITY_DN773_c0_g1	1146	1170	1157	-27.50	-17.90	0.650909090909091	12	1-7,1170-1164;8-18,1159-1149	x-x,1163-1160[BULt];19-21,1148-1146[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	GAAUCAUGUUUCUAAGUCUAGUCAA&UUGAUUA----UAGAAACAUGAGUU	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN773_c0_g1_1157_TPlot.pdf
TRINITY_DN773_c0_g1:1164	si_s672	TRINITY_DN773_c0_g1	1149	1173	1164	-27.10	-17.70	0.653136531365314	14	4-10,1170-1164;11-21,1159-1149	1-3,1173-1171[UP5];x-x,1163-1160[BULt]	(((((((((((....(((((((...&...)))))))----)))))))))))	UCAUGUUUCUAAGUCUAGUCAACCA&GAAUUGAUUA----UAGAAACAUGA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s672_TRINITY_DN773_c0_g1_1164_TPlot.pdf
TRINITY_DN773_c0_g1:1417	si_s70	TRINITY_DN773_c0_g1	1403	1426	1417	-25.80	-17.00	0.65891472868217	9.5	2-11,1425-1416;12-17,1414-1409;18-21,1406-1403	1-1,1426-1426[UP5];x-x,1415-1415[BULt];x-x,1408-1407[BULt]	((((..((((((.((((((((((.&.))))))))))-))))))--))))	GGAAACAGAAGAGGAGGUGGAAGA&ACUUCUAUUUU-UUUUCU--UUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN773_c0_g1_1417_TPlot.pdf
TRINITY_DN773_c0_g1:1419	si_s82	TRINITY_DN773_c0_g1	1408	1428	1419	-28.90	-19.30	0.667820069204152	9.5	3-8,1426-1421;10-20,1419-1409	1-2,1428-1427[UP5];9-9,1420-1420[SIL];21-21,1408-1408[UP3]	.(((((((((((.((((((..&..)))))).))))))))))).	CAGAAGAGGAGGUGGAAGACC&UUUCUUUCCUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN773_c0_g1_1419_TPlot.pdf
TRINITY_DN773_c0_g1:1420	si_s81	TRINITY_DN773_c0_g1	1409	1429	1420	-28.90	-19.30	0.667820069204152	10.5	4-9,1426-1421;11-21,1419-1409	1-3,1429-1427[UP5];10-10,1420-1420[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AGAAGAGGAGGUGGAAGACCU&UUUUCUUUCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN773_c0_g1_1420_TPlot.pdf
TRINITY_DN773_c0_g1:1501	si_a490	TRINITY_DN773_c0_g1	1490	1509	1501	-28.10	-18.80	0.669039145907473	11.5	4-6,1506-1504;8-21,1503-1490	1-3,1509-1507[UP5];7-7,x-x[BULq]	((((((((((((((-(((...&...))).))))))))))))))	GCGGGGAGCGGCGU-UUCAGA&AUAGAAUAUGUCGUUUUUCGU	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a490_TRINITY_DN773_c0_g1_1501_TPlot.pdf
TRINITY_DN7741_c0_g1:414	si_s82	TRINITY_DN7741_c0_g1	403	426	414	-28.90	-19.30	0.667820069204152	10	3-7,424-420;8-9,418-417;10-21,414-403	1-2,426-425[UP5];x-x,419-419[BULt];x-x,416-415[BULt]	((((((((((((..((.(((((..&..)))))-))--))))))))))))	AAGAAGAAGAGAUUGGAAAAGACU&UUUCUUU-CC--UUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7741_c0_g1_414_TPlot.pdf
TRINITY_DN7752_c0_g1:1823	si_s1	TRINITY_DN7752_c0_g1	1812	1832	1823	-18.70	-12.60	0.67379679144385	10	1-14,1832-1819	15-21,1818-1812[UP3]	.......((((((((((((((&)))))))))))))).......	CGAAAAAAAGUAGUGUGAAAA&UUUUUAUAUUACUUAUUAUUA	2	0.999995655412073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN7752_c0_g1_1823_TPlot.pdf
TRINITY_DN7753_c0_g1:503	si_a647	TRINITY_DN7753_c0_g1	492	514	503	-29.50	-21.90	0.742372881355932	9.5	2-9,513-506;10-18,503-495	1-1,514-514[UP5];x-x,505-504[BULt];19-21,494-492[UP3]	...(((((((((..((((((((.&.))))))))--)))))))))...	UCCUCCCGGUGUCAAUUACUCAG&UUGAGUAAU--AUAUCGGGAAAU	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN7753_c0_g1_503_TPlot.pdf
TRINITY_DN7753_c0_g1:510	si_a642	TRINITY_DN7753_c0_g1	497	519	510	-25.90	-18.10	0.698841698841699	11	5-14,515-506;15-21,503-497	1-4,519-516[UP5];x-x,505-504[BULt]	(((((((..((((((((((....&....))))))))))--)))))))	CCGGUGUCAAUUACUCAGAUGUC&UUUUUUUGAGUAAU--AUAUCGG	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN7753_c0_g1_510_TPlot.pdf
TRINITY_DN7753_c0_g1:691	si_a78	TRINITY_DN7753_c0_g1	680	700	691	-22.30	-15.00	0.672645739910314	6.5	3-16,698-685;18-21,683-680	1-2,700-699[UP5];17-17,684-684[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UUCUGAGUAAUGGAAAAUACA&AUUGUUUUUCAUUAUUAAGAA	4	0.999999790503222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a78_TRINITY_DN7753_c0_g1_691_TPlot.pdf
TRINITY_DN7753_c0_g1:794	si_a128	TRINITY_DN7753_c0_g1	783	804	794	-23.20	-15.80	0.681034482758621	7.5	1-7,804-798;8-16,796-788;18-19,786-785	x-x,797-797[BULt];17-17,787-787[SIL];20-21,784-783[UP3]	..((.(((((((((.(((((((&)))))))-))))))))).))..	UAUAUUUGCUGUUGACUAUAGA&UUUAUAG-CAAUAGUAAUUAAU	4	0.990963269666491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN7753_c0_g1_794_TPlot.pdf
TRINITY_DN7753_c0_g1:798	si_a125	TRINITY_DN7753_c0_g1	786	807	798	-25.00	-16.30	0.652	10	3-10,805-798;11-19,796-788	1-2,807-806[UP5];x-x,797-797[BULt];20-21,787-786[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	AUUUGCUGUUGACUAUAGAGGU&UGUUUUAUAG-CAAUAGUAAUU	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN7753_c0_g1_798_TPlot.pdf
TRINITY_DN7757_c0_g1:1476	si_s555	TRINITY_DN7757_c0_g1	1465	1485	1476	-26.90	-17.50	0.650557620817844	9	4-12,1482-1474;14-19,1472-1467	1-3,1485-1483[UP5];13-13,1473-1473[SIL];20-21,1466-1465[UP3]	..((((((.(((((((((...&...))))))))).))))))..	AUCCGAAAUUAUUAGUUCACC&AUAGAAUUAAUAUUUUCGGGA	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN7757_c0_g1_1476_TPlot.pdf
TRINITY_DN7757_c0_g1:1478	si_s553	TRINITY_DN7757_c0_g1	1467	1487	1478	-23.50	-16.50	0.702127659574468	11	6-14,1482-1474;16-21,1472-1467	1-5,1487-1483[UP5];15-15,1473-1473[SIL]	((((((.(((((((((.....&.....))))))))).))))))	CCGAAAUUAUUAGUUCACCAU&AAAUAGAAUUAAUAUUUUCGG	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s553_TRINITY_DN7757_c0_g1_1478_TPlot.pdf
TRINITY_DN7759_c0_g4:121	si_s506	TRINITY_DN7759_c0_g4	110	130	121	-24.30	-16.60	0.683127572016461	8.5	1-14,130-117	15-21,116-110[UP3]	.......((((((((((((((&)))))))))))))).......	AACAUAGGUAGGAUUGUUUUG&CAAAACAAUUCUAUAUUCUUA	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN7759_c0_g4_121_TPlot.pdf
TRINITY_DN7759_c0_g4:122	si_s505	TRINITY_DN7759_c0_g4	111	131	122	-24.70	-16.80	0.680161943319838	8.5	2-15,130-117	1-1,131-131[UP5];16-21,116-111[UP3]	......((((((((((((((.&.))))))))))))))......	ACAUAGGUAGGAUUGUUUUGG&ACAAAACAAUUCUAUAUUCUU	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN7759_c0_g4_122_TPlot.pdf
TRINITY_DN7759_c0_g4:124	si_s503	TRINITY_DN7759_c0_g4	113	133	124	-24.00	-16.80	0.7	10	4-17,130-117	1-3,133-131[UP5];18-21,116-113[UP3]	....((((((((((((((...&...))))))))))))))....	AUAGGUAGGAUUGUUUUGGUU&AAACAAAACAAUUCUAUAUUC	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s503_TRINITY_DN7759_c0_g4_124_TPlot.pdf
TRINITY_DN7759_c0_g4:128	si_s499	TRINITY_DN7759_c0_g4	117	137	128	-22.60	-16.40	0.725663716814159	14	8-21,130-117	1-7,137-131[UP5]	((((((((((((((.......&.......))))))))))))))	GUAGGAUUGUUUUGGUUUUCU&AUAUAAACAAAACAAUUCUAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN7759_c0_g4_128_TPlot.pdf
TRINITY_DN7759_c0_g4:129	si_s498	TRINITY_DN7759_c0_g4	118	138	129	-22.40	-14.90	0.665178571428572	15.5	9-21,130-118	1-8,138-131[UP5]	(((((((((((((........&........)))))))))))))	UAGGAUUGUUUUGGUUUUCUC&AAUAUAAACAAAACAAUUCUA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s498_TRINITY_DN7759_c0_g4_129_TPlot.pdf
TRINITY_DN7760_c0_g1:159	si_a787	TRINITY_DN7760_c0_g1	146	167	159	-26.30	-17.40	0.661596958174905	8	1-5,167-163;7-14,162-155;15-21,152-146	6-6,x-x[BULq];x-x,154-153[BULt]	(((((((..((((((((-(((((&))))).))))))))--)))))))	UGGAAAGCCUGGAGGAG-AGAAG&CUUCUAUUUUUCUA--UUUUCCA	2	0.999999999276151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7760_c0_g1_159_TPlot.pdf
TRINITY_DN7760_c0_g1:668	si_a504	TRINITY_DN7760_c0_g1	638	677	668	-32.90	-21.90	0.665653495440729	21	2-13,676-665;14-21,645-638	1-1,677-677[UP5];x-x,664-646[BULt]	((((((((...................((((((((((((.&.))))))))))))-------------------))))))))	ACAUUCCAAUGGAAGAACUUUUUAAAGAGGAAGACGAGAC&UUUUCGUCUUCCU-------------------UGGAAUGU	2	0.999469858280925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN7760_c0_g1_668_TPlot.pdf
TRINITY_DN7765_c0_g1:687	si_a508	TRINITY_DN7765_c0_g1	676	697	687	-36.30	-23.80	0.65564738292011	8	1-5,697-693;6-16,691-681	x-x,692-692[BULt];17-21,680-676[UP3]	.....(((((((((((.(((((&)))))-))))))))))).....	AAGGUCAUUCCAGGGAUAGACG&CGUCU-UCCUUGGAAUGUAAGG	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a508_TRINITY_DN7765_c0_g1_687_TPlot.pdf
TRINITY_DN7765_c0_g1:688	si_a507	TRINITY_DN7765_c0_g1	677	698	688	-34.90	-23.80	0.681948424068768	8	2-6,697-693;7-17,691-681	1-1,698-698[UP5];x-x,692-692[BULt];18-21,680-677[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	AGGUCAUUCCAGGGAUAGACGU&UCGUCU-UCCUUGGAAUGUAAG	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN7765_c0_g1_688_TPlot.pdf
TRINITY_DN7765_c0_g1:691	si_a504	TRINITY_DN7765_c0_g1	680	701	691	-32.90	-23.80	0.723404255319149	10.5	5-9,697-693;10-20,691-681	1-4,701-698[UP5];x-x,692-692[BULt];21-21,680-680[UP3]	.(((((((((((.(((((....&....)))))-))))))))))).	UCAUUCCAGGGAUAGACGUAAC&UUUUCGUCU-UCCUUGGAAUGU	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN7765_c0_g1_691_TPlot.pdf
TRINITY_DN7768_c0_g1:1159	si_a785	TRINITY_DN7768_c0_g1	1148	1169	1159	-25.90	-18.10	0.698841698841699	7	1-8,1169-1162;9-17,1160-1152;20-21,1149-1148	x-x,1161-1161[BULt];18-19,1151-1150[SIL]	((..(((((((((.((((((((&))))))))-)))))))))..))	GAUCAUAGAAAAAUUGGGAGGG&CUCUUCUA-UUUUUCUAUUUUC	3	0.999999999337229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7768_c0_g1_1159_TPlot.pdf
TRINITY_DN7768_c0_g1:1160	si_a784	TRINITY_DN7768_c0_g1	1149	1170	1160	-24.70	-16.50	0.668016194331984	9	2-9,1169-1162;10-18,1160-1152	1-1,1170-1170[UP5];x-x,1161-1161[BULt];19-21,1151-1149[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AUCAUAGAAAAAUUGGGAGGGA&ACUCUUCUA-UUUUUCUAUUUU	2	0.999999999983125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN7768_c0_g1_1160_TPlot.pdf
TRINITY_DN7768_c0_g1:1162	si_a783	TRINITY_DN7768_c0_g1	1150	1171	1162	-24.70	-16.50	0.668016194331984	10	3-10,1169-1162;11-19,1160-1152	1-2,1171-1170[UP5];x-x,1161-1161[BULt];20-21,1151-1150[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	UCAUAGAAAAAUUGGGAGGGAA&AACUCUUCUA-UUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7768_c0_g1_1162_TPlot.pdf
TRINITY_DN7768_c0_g1:1961	si_a395	TRINITY_DN7768_c0_g1	1950	1970	1961	-24.70	-16.66	0.674493927125506	10	2-4,1969-1967;9-21,1962-1950	1-1,1970-1970[UP5];5-8,1966-1963[SIL]	(((((((((((((....(((.&.)))....)))))))))))))	ACAGAGCAAUUCUUGGAUCUG&AAGAAUAUAGAAUUGUUUUGU	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN7768_c0_g1_1961_TPlot.pdf
TRINITY_DN7768_c0_g1:809	si_a71	TRINITY_DN7768_c0_g1	798	818	809	-23.30	-17.28	0.741630901287554	7	1-6,818-813;10-21,809-798	7-9,812-810[SIL]	((((((((((((...((((((&))))))...))))))))))))	UAAUGAAAAAUAUUGUGAAAG&CUUUCAAAUUGUUUUUCAUUA	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN7768_c0_g1_809_TPlot.pdf
TRINITY_DN7768_c0_g1:810	si_a70	TRINITY_DN7768_c0_g1	799	819	810	-23.90	-17.38	0.727196652719665	7	1-7,819-813;11-21,809-799	8-10,812-810[SIL]	(((((((((((...(((((((&)))))))...)))))))))))	AAUGAAAAAUAUUGUGAAAGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999273344747529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN7768_c0_g1_810_TPlot.pdf
TRINITY_DN7771_c0_g1:453	si_a383	TRINITY_DN7771_c0_g1	440	462	453	-24.80	-17.30	0.69758064516129	7	2-13,461-450;14-19,447-442	1-1,462-462[UP5];x-x,449-448[BULt];20-21,441-440[UP3]	..((((((..((((((((((((.&.))))))))))))--))))))..	GUUAUUCUAGUGGUUCGAAAUCC&UGAUUUCGAAUUA--AGAAUAUA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a383_TRINITY_DN7771_c0_g1_453_TPlot.pdf
TRINITY_DN7771_c0_g1:454	si_a382	TRINITY_DN7771_c0_g1	441	463	454	-24.60	-17.30	0.703252032520325	7.5	3-14,461-450;15-20,447-442	1-2,463-462[UP5];x-x,449-448[BULt];21-21,441-441[UP3]	.((((((..((((((((((((..&..))))))))))))--)))))).	UUAUUCUAGUGGUUCGAAAUCCU&AUGAUUUCGAAUUA--AGAAUAU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a382_TRINITY_DN7771_c0_g1_454_TPlot.pdf
TRINITY_DN7772_c0_g2:16	si_s76	TRINITY_DN7772_c0_g2	4	25	16	-23.60	-18.30	0.775423728813559	6.5	3-14,23-12;15-21,10-4	1-2,25-24[UP5];x-x,11-11[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	AAGAAAGUGGGAGAAAAAAGGA&AUUUUUUUUCUUUC-CUUUCUU	2	0.999999360952188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7772_c0_g2_16_TPlot.pdf
TRINITY_DN7774_c0_g1:642	si_a23	TRINITY_DN7774_c0_g1	629	651	642	-22.80	-15.60	0.684210526315789	9	4-16,648-636;17-21,633-629	1-3,651-649[UP5];x-x,635-634[BULt]	(((((..(((((((((((((...&...)))))))))))))--)))))	UCUUACUGAACUGAAAAUGACUG&UAUUUAUUUUUAGUUC--UAAGA	4	0.999729613703533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN7774_c0_g1_642_TPlot.pdf
TRINITY_DN7776_c0_g1:2360	si_s16	TRINITY_DN7776_c0_g1	2344	2369	2360	-25.60	-18.40	0.71875	12.5	1-16,2369-2354;17-20,2348-2345	x-x,2353-2349[BULt];21-21,2344-2344[UP3]	.((((.....((((((((((((((((&))))))))))))))))-----)))).	GUGCAACCAAGUCGGUGUAGUGGUGG&UUAUUACUAUAUUGAU-----UGCAA	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN7776_c0_g1_2360_TPlot.pdf
TRINITY_DN7778_c0_g1:1770	si_a126	TRINITY_DN7778_c0_g1	1759	1780	1770	-24.70	-16.50	0.668016194331984	9.5	1-4,1780-1777;6-16,1774-1764	5-5,1776-1775[AILt];17-21,1763-1759[UP3]	.....(((((((((((..((((&))))-.))))))))))).....	GCCUGACUGUUGCUAUUCAAAC&GUUU-UAUAGCAAUAGUAAUUA	4	0.998779831951019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN7778_c0_g1_1770_TPlot.pdf
TRINITY_DN7778_c0_g1:1771	si_a125	TRINITY_DN7778_c0_g1	1760	1781	1771	-25.00	-17.50	0.7	8.5	1-5,1781-1777;7-17,1774-1764	6-6,1776-1775[AILt];18-21,1763-1760[UP3]	....(((((((((((..(((((&)))))-.)))))))))))....	CCUGACUGUUGCUAUUCAAACA&UGUUU-UAUAGCAAUAGUAAUU	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN7778_c0_g1_1771_TPlot.pdf
TRINITY_DN7778_c0_g1:1773	si_a123	TRINITY_DN7778_c0_g1	1762	1783	1773	-26.60	-18.40	0.691729323308271	7.5	2-7,1782-1777;9-19,1774-1764	1-1,1783-1783[UP5];8-8,1776-1775[AILt];20-21,1763-1762[UP3]	..(((((((((((..((((((.&.))))))-.)))))))))))..	UGACUGUUGCUAUUCAAACAAU&CUUGUUU-UAUAGCAAUAGUAA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN7778_c0_g1_1773_TPlot.pdf
TRINITY_DN7778_c0_g1:2193	si_s260	TRINITY_DN7778_c0_g1	2182	2202	2193	-24.10	-16.20	0.672199170124481	8	1-5,2202-2198;7-17,2196-2186	6-6,2197-2197[SIL];18-21,2185-2182[UP3]	....(((((((((((.(((((&))))).)))))))))))....	ACAGUUUUUGAGUGACGUAUC&GAUAUAUUACUCAAAAAAAUC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN7778_c0_g1_2193_TPlot.pdf
TRINITY_DN7778_c0_g1:2194	si_s259	TRINITY_DN7778_c0_g1	2183	2203	2194	-23.60	-16.60	0.703389830508475	8	2-6,2202-2198;8-18,2196-2186	1-1,2203-2203[UP5];7-7,2197-2197[SIL];19-21,2185-2183[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	CAGUUUUUGAGUGACGUAUCU&CGAUAUAUUACUCAAAAAAAU	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s259_TRINITY_DN7778_c0_g1_2194_TPlot.pdf
TRINITY_DN7778_c0_g1:2195	si_s258	TRINITY_DN7778_c0_g1	2184	2205	2195	-25.90	-17.80	0.687258687258687	8	1-2,2205-2204;3-7,2202-2198;9-19,2196-2186	x-x,2203-2203[BULt];8-8,2197-2197[SIL];20-21,2185-2184[UP3]	..(((((((((((.(((((.((&))-))))).)))))))))))..	AGUUUUUGAGUGACGUAUCUGG&CC-GAUAUAUUACUCAAAAAAA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s258_TRINITY_DN7778_c0_g1_2195_TPlot.pdf
TRINITY_DN7779_c0_g1:1120	si_s896	TRINITY_DN7779_c0_g1	1109	1131	1120	-31.60	-22.20	0.70253164556962	7.5	1-7,1131-1125;8-15,1122-1115;17-20,1113-1110	x-x,1124-1123[BULt];16-16,1114-1114[SIL];21-21,1109-1109[UP3]	.((((.((((((((..(((((((&)))))))--)))))))).)))).	CGAAAAUGGGGAGAAAAAGCCUA&UAGGCUU--UCUCUUCAAUUUCA	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN7779_c0_g1_1120_TPlot.pdf
TRINITY_DN7779_c0_g1:1914	si_s7	TRINITY_DN7779_c0_g1	1903	1924	1914	-21.70	-16.40	0.755760368663594	8.5	1-5,1924-1920;6-19,1918-1905	x-x,1919-1919[BULt];20-21,1904-1903[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	UAGUGGUAAUAGUAAGCUGGUG&UAUUA-CUUAUUAUUACUAUAU	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN7779_c0_g1_1914_TPlot.pdf
TRINITY_DN7783_c0_g1:835	si_a357	TRINITY_DN7783_c0_g1	824	847	835	-28.80	-20.00	0.694444444444444	12	3-9,845-839;10-20,835-825	1-2,847-846[UP5];x-x,838-836[BULt];21-21,824-824[UP3]	.(((((((((((...(((((((..&..)))))))---))))))))))).	AAUCCGAUCAAAGAGGUGGAAUCA&UAAUUCUAU---UUUGAUCGGAUC	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a357_TRINITY_DN7783_c0_g1_835_TPlot.pdf
TRINITY_DN7783_c0_g1:971	si_a58	TRINITY_DN7783_c0_g1	960	981	971	-34.60	-23.10	0.667630057803468	6.5	1-6,981-976;7-8,974-973;10-21,971-960	x-x,975-975[BULt];9-9,972-972[SIL]	((((((((((((.((.((((((&))))))-)).))))))))))))	UUUGGAAGAAGCUGGAUCGAUU&AGUCGA-CUCGCUUCUUUCAAA	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN7783_c0_g1_971_TPlot.pdf
TRINITY_DN7783_c0_g1:972	si_a57	TRINITY_DN7783_c0_g1	961	982	972	-36.60	-23.80	0.650273224043716	7	1-7,982-976;8-9,974-973;11-21,971-961	x-x,975-975[BULt];10-10,972-972[SIL]	(((((((((((.((.(((((((&)))))))-)).)))))))))))	UUGGAAGAAGCUGGAUCGAUUU&GAGUCGA-CUCGCUUCUUUCAA	4	0.999961952797637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN7783_c0_g1_972_TPlot.pdf
TRINITY_DN7784_c1_g1:732	si_a409	TRINITY_DN7784_c1_g1	721	741	732	-19.50	-12.90	0.661538461538462	7	2-7,740-735;10-20,732-722	1-1,741-741[UP5];8-9,734-733[SIL];21-21,721-721[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	AUAUUUAAAUAUUUACAAAGA&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999999959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7784_c1_g1_732_TPlot.pdf
TRINITY_DN7786_c0_g1:1867	si_a823	TRINITY_DN7786_c0_g1	1856	1876	1867	-25.50	-17.20	0.674509803921569	10	3-14,1874-1863	1-2,1876-1875[UP5];15-21,1862-1856[UP3]	.......((((((((((((..&..)))))))))))).......	AAUGAAAUCUUUCCUUUCUGG&GAAGAAAGGAAAGAAAAAAAA	4	0.992648724541705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a823_TRINITY_DN7786_c0_g1_1867_TPlot.pdf
TRINITY_DN7786_c0_g1:1868	si_a822	TRINITY_DN7786_c0_g1	1857	1877	1868	-26.20	-17.20	0.656488549618321	11	4-15,1874-1863	1-3,1877-1875[UP5];16-21,1862-1857[UP3]	......((((((((((((...&...))))))))))))......	AUGAAAUCUUUCCUUUCUGGA&AGAAGAAAGGAAAGAAAAAAA	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a822_TRINITY_DN7786_c0_g1_1868_TPlot.pdf
TRINITY_DN7786_c0_g1:1869	si_a821	TRINITY_DN7786_c0_g1	1858	1878	1869	-26.20	-17.20	0.656488549618321	12	5-16,1874-1863	1-4,1878-1875[UP5];17-21,1862-1858[UP3]	.....((((((((((((....&....)))))))))))).....	UGAAAUCUUUCCUUUCUGGAA&AAGAAGAAAGGAAAGAAAAAA	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a821_TRINITY_DN7786_c0_g1_1869_TPlot.pdf
TRINITY_DN7786_c0_g1:2663	si_s88	TRINITY_DN7786_c0_g1	2638	2672	2663	-34.80	-24.30	0.698275862068966	19	1-15,2672-2658;16-21,2643-2638	x-x,2657-2644[BULt]	((((((..............(((((((((((((((&)))))))))))))))--------------))))))	GGAGCGCGACAAUUUUCUCAGAGGAGGAGGAGGGA&UCCUUUCUUCUUCUU--------------CGCUUC	3	0.999999992323359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7786_c0_g1_2663_TPlot.pdf
TRINITY_DN7786_c0_g1:2667	si_s84	TRINITY_DN7786_c0_g1	2656	2676	2667	-32.30	-22.60	0.69969040247678	9.5	3-19,2674-2658	1-2,2676-2675[UP5];20-21,2657-2656[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CAGAGGAGGAGGAGGGAGACU&UCUUUCCUUUCUUCUUCUUCG	4	0.999999999992811	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN7786_c0_g1_2667_TPlot.pdf
TRINITY_DN7786_c0_g1:361	si_s213	TRINITY_DN7786_c0_g1	347	369	361	-37.10	-24.64	0.664150943396226	9.5	1-9,369-361;11-13,360-358;15-21,353-347	10-10,x-x[BULq];14-14,357-354[AILt]	(((((((....(((-(((((((((&))))))))).)))---.)))))))	GCGCGGUGAAGUCG-AUGCAGCUG&CAGUUGUGUUCGA---AACCGCGU	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s213_TRINITY_DN7786_c0_g1_361_TPlot.pdf
TRINITY_DN7786_c0_g1:684	si_a113	TRINITY_DN7786_c0_g1	673	693	684	-26.20	-18.00	0.687022900763359	12	6-7,688-687;9-20,685-674	1-5,693-689[UP5];8-8,686-686[SIL];21-21,673-673[UP3]	.((((((((((((.((.....&.....)).)))))))))))).	GAUAAAACAAGCUGGUUCUUC&AAAAUACGAGCUUGUUUUAUA	4	0.998230758264348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN7786_c0_g1_684_TPlot.pdf
TRINITY_DN7787_c0_g1:162	si_a637	TRINITY_DN7787_c0_g1	151	171	162	-25.80	-17.70	0.686046511627907	9	1-6,171-166;8-15,164-157	7-7,165-165[SIL];16-21,156-151[UP3]	......((((((((.((((((&)))))).))))))))......	AAUGCCCUCAAAAAUGUCGAC&GUCGAUUUUUUUGAGUAAUAU	2	0.999560141918521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN7787_c0_g1_162_TPlot.pdf
TRINITY_DN7787_c0_g1:163	si_a636	TRINITY_DN7787_c0_g1	152	172	163	-26.30	-18.50	0.703422053231939	8	1-7,172-166;9-16,164-157	8-8,165-165[SIL];17-21,156-152[UP3]	.....((((((((.(((((((&))))))).)))))))).....	AUGCCCUCAAAAAUGUCGACA&UGUCGAUUUUUUUGAGUAAUA	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN7787_c0_g1_163_TPlot.pdf
TRINITY_DN7787_c0_g1:164	si_a635	TRINITY_DN7787_c0_g1	153	173	164	-26.10	-19.50	0.747126436781609	7	1-8,173-166;10-17,164-157	9-9,165-165[SIL];18-21,156-153[UP3]	....((((((((.((((((((&)))))))).))))))))....	UGCCCUCAAAAAUGUCGACAU&AUGUCGAUUUUUUUGAGUAAU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN7787_c0_g1_164_TPlot.pdf
TRINITY_DN7789_c0_g1:482	si_s18	TRINITY_DN7789_c0_g1	470	490	482	-27.50	-18.50	0.672727272727273	6.5	2-8,489-483;10-14,482-478;15-21,476-470	1-1,490-490[UP5];9-9,x-x[BULq];x-x,477-477[BULt]	(((((((.(((((-(((((((.&.))))))).)))))-)))))))	GGUUGCAUAUCAA-AUGGUGAA&AUUACUAUAUUGAU-UGCAACU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN7789_c0_g1_482_TPlot.pdf
TRINITY_DN7789_c0_g1:582	si_a386	TRINITY_DN7789_c0_g1	571	591	582	-24.80	-17.20	0.693548387096774	7	1-15,591-577	16-21,576-571[UP3]	......(((((((((((((((&)))))))))))))))......	UCACACAUUCUUGAUUCGAAA&UUUCGAAUUAAGAAUAUAGAA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a386_TRINITY_DN7789_c0_g1_582_TPlot.pdf
TRINITY_DN7789_c0_g1:786	si_s197	TRINITY_DN7789_c0_g1	768	795	786	-29.20	-20.30	0.695205479452055	17	1-12,795-784;13-21,776-768	x-x,783-777[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	GGCUGGUACCACCUAUAUUUCAAAAUGA&UUAUUUUGGAAU-------GUACCAGUU	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN7789_c0_g1_786_TPlot.pdf
TRINITY_DN7789_c0_g1:787	si_s196	TRINITY_DN7789_c0_g1	769	796	787	-29.30	-19.80	0.675767918088737	10.5	2-13,795-784;14-21,776-769	1-1,796-796[UP5];x-x,783-777[BULt]	((((((((.......((((((((((((.&.))))))))))))-------))))))))	GCUGGUACCACCUAUAUUUCAAAAUGAG&AUUAUUUUGGAAU-------GUACCAGU	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s196_TRINITY_DN7789_c0_g1_787_TPlot.pdf
TRINITY_DN7790_c0_g1:407	si_s48	TRINITY_DN7790_c0_g1	397	416	407	-28.80	-20.00	0.694444444444444	11.5	6-18,411-399;20-21,398-397	1-5,416-412[UP5];19-19,x-x[BULq]	((-(((((((((((((.....&.....))))))))))))).))	GC-GACUUGAGAUCCAUCUGG&AUAAUUGGAUUUCAAGUUAGC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN7790_c0_g1_407_TPlot.pdf
TRINITY_DN7793_c0_g1:4244	si_s429	TRINITY_DN7793_c0_g1	4233	4254	4244	-21.10	-13.80	0.654028436018957	12.5	6-9,4249-4246;10-21,4244-4233	1-5,4254-4250[UP5];x-x,4245-4245[BULt]	((((((((((((.((((.....&.....))))-))))))))))))	GAUGUGUAGUUAUUUGUGUUUA&AUAUAACAA-UAAUUACAUAUU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN7793_c0_g1_4244_TPlot.pdf
TRINITY_DN7793_c0_g1:4741	si_s106	TRINITY_DN7793_c0_g1	4730	4750	4741	-28.60	-19.50	0.681818181818182	9.5	4-20,4747-4731	1-3,4750-4748[UP5];21-21,4730-4730[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUUUCUGUUUUUCAGUCUACU&UUCGGAUUGGAAAAUAGAAAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s106_TRINITY_DN7793_c0_g1_4741_TPlot.pdf
TRINITY_DN7793_c0_g1:710	si_s796	TRINITY_DN7793_c0_g1	697	718	710	-30.30	-20.30	0.66996699669967	7.5	1-3,718-716;5-11,715-709;12-21,706-697	4-4,x-x[BULq];x-x,708-707[BULt]	((((((((((..(((((((-(((&))).)))))))--))))))))))	AAUGAAGAUAAUAAGUACG-GCU&AGCUCGUAUUU--UAUCUUCGUU	4	0.999991392983814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN7793_c0_g1_710_TPlot.pdf
TRINITY_DN7793_c0_g1:711	si_s795	TRINITY_DN7793_c0_g1	698	719	711	-30.30	-19.70	0.65016501650165	8.5	2-4,718-716;6-12,715-709;13-21,706-698	1-1,719-719[UP5];5-5,x-x[BULq];x-x,708-707[BULt]	(((((((((..(((((((-(((.&.))).)))))))--)))))))))	AUGAAGAUAAUAAGUACG-GCUG&AAGCUCGUAUUU--UAUCUUCGU	3	0.999999700438143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN7793_c0_g1_711_TPlot.pdf
TRINITY_DN7793_c0_g1:7591	si_s1	TRINITY_DN7793_c0_g1	7581	7600	7591	-18.70	-12.60	0.67379679144385	5	1-12,7600-7589;15-20,7587-7582	13-14,7588-7588[AILq];21-21,7581-7581[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	AAAUAAUU-GUAAUAUGAAGA&UUUUUAUAUUACUUAUUAUUA	2	0.999992201745622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN7793_c0_g1_7591_TPlot.pdf
TRINITY_DN7793_c2_g1:230	si_a689	TRINITY_DN7793_c2_g1	219	239	230	-38.00	-25.70	0.676315789473684	8	1-7,239-233;9-11,231-229;13-20,227-220	8-8,232-232[SIL];12-12,228-228[SIL];21-21,219-219[UP3]	.((((((((.(((.(((((((&))))))).))).)))))))).	UCCAGUUGUUUUCUGGGCCGC&GCGGUUUCGAACACAACUGGU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a689_TRINITY_DN7793_c2_g1_230_TPlot.pdf
TRINITY_DN7793_c2_g1:232	si_a687	TRINITY_DN7793_c2_g1	221	241	232	-37.10	-25.00	0.673854447439353	7	2-9,240-233;11-13,231-229;15-21,227-221	1-1,241-241[UP5];10-10,232-232[SIL];14-14,228-228[SIL]	(((((((.(((.((((((((.&.)))))))).))).)))))))	CAGUUGUUUUCUGGGCCGCGG&ACGCGGUUUCGAACACAACUG	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a687_TRINITY_DN7793_c2_g1_232_TPlot.pdf
TRINITY_DN7798_c0_g1:2502	si_s86	TRINITY_DN7798_c0_g1	2490	2511	2502	-32.90	-21.90	0.665653495440729	8	1-14,2511-2498;17-20,2494-2491	15-16,2497-2495[AILt];21-21,2490-2490[UP3]	.((((...((((((((((((((&))))))))))))))-..)))).	CGCGACCAAAGGAGGAAGGGGA&UUUCCUUUCUUCUU-CUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN7798_c0_g1_2502_TPlot.pdf
TRINITY_DN7799_c0_g1:3736	si_a136	TRINITY_DN7799_c0_g1	3725	3745	3736	-25.70	-17.50	0.680933852140078	6	1-11,3745-3735;13-19,3733-3727	12-12,3734-3734[SIL];20-21,3726-3725[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	GUAUAGCGAGUGAUUACUAUU&AAUAGUAAUUAAUCGUUGUUG	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a136_TRINITY_DN7799_c0_g1_3736_TPlot.pdf
TRINITY_DN77_c0_g1:1082	si_a276	TRINITY_DN77_c0_g1	1071	1092	1082	-37.90	-24.68	0.651187335092348	5.5	1-8,1092-1085;9-16,1083-1076;20-21,1072-1071	x-x,1084-1084[BULt];17-19,1075-1073[SIL]	((...((((((((.((((((((&))))))))-))))))))...))	CCUUAUGAUCUUUAUCGUAGGC&GCCUACGA-AAAGAUCGCUUGG	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN77_c0_g1_1082_TPlot.pdf
TRINITY_DN77_c0_g1:1083	si_a275	TRINITY_DN77_c0_g1	1072	1093	1083	-37.00	-24.90	0.672972972972973	6.5	1-9,1093-1085;10-17,1083-1076	x-x,1084-1084[BULt];18-21,1075-1072[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	CUUAUGAUCUUUAUCGUAGGCG&CGCCUACGA-AAAGAUCGCUUG	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a275_TRINITY_DN77_c0_g1_1083_TPlot.pdf
TRINITY_DN77_c0_g1:1126	si_a321	TRINITY_DN77_c0_g1	1117	1135	1126	-26.70	-19.90	0.745318352059925	4.5	2-12,1134-1124;15-21,1123-1117	1-1,1135-1135[UP5];13-14,x-x[BULq]	(((((((--(((((((((((.&.)))))))))))..)))))))	GGAAUGA--AAAUCAUGGGUC&UAUCCAUGAUUUUUUUAUUCC	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN77_c0_g1_1126_TPlot.pdf
TRINITY_DN77_c0_g1:1127	si_a320	TRINITY_DN77_c0_g1	1118	1136	1127	-24.40	-16.60	0.680327868852459	6.5	3-13,1134-1124;16-21,1123-1118	1-2,1136-1135[UP5];14-15,x-x[BULq]	((((((--(((((((((((..&..)))))))))))..))))))	GAAUGA--AAAUCAUGGGUCU&UUAUCCAUGAUUUUUUUAUUC	4	0.999993813930176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN77_c0_g1_1127_TPlot.pdf
TRINITY_DN77_c0_g1:1129	si_a318	TRINITY_DN77_c0_g1	1118	1138	1129	-22.50	-14.90	0.662222222222222	12.5	5-17,1134-1122	1-4,1138-1135[UP5];18-21,1121-1118[UP3]	....(((((((((((((....&....)))))))))))))....	GAAUGAAAAUCAUGGGUCUGA&AUUUAUCCAUGAUUUUUUUAU	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN77_c0_g1_1129_TPlot.pdf
TRINITY_DN77_c0_g1:1130	si_a317	TRINITY_DN77_c0_g1	1119	1144	1130	-24.30	-16.10	0.662551440329218	15.5	1-5,1144-1140;6-18,1134-1122	x-x,1139-1135[BULt];19-21,1121-1119[UP3]	...(((((((((((((.....(((((&)))))-----)))))))))))))...	AAUGAAAAUCAUGGGUCUGAAAGAUC&GAUUU-----AUCCAUGAUUUUUUUA	3	0.99999999802248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN77_c0_g1_1130_TPlot.pdf
TRINITY_DN77_c0_g1:1134	si_a313	TRINITY_DN77_c0_g1	1123	1148	1134	-28.70	-18.70	0.651567944250871	17	4-9,1145-1140;10-21,1134-1123	1-3,1148-1146[UP5];x-x,1139-1135[BULt]	((((((((((((.....((((((...&...))))))-----))))))))))))	AAAAUCAUGGGUCUGAAAGAUCCUGU&CUUGGAUUU-----AUCCAUGAUUUU	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN77_c0_g1_1134_TPlot.pdf
TRINITY_DN77_c0_g1:1249	si_a449	TRINITY_DN77_c0_g1	1238	1258	1249	-25.70	-18.30	0.712062256809339	7	2-17,1257-1242	1-1,1258-1258[UP5];18-21,1241-1238[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUCUAACAGCAAUUAUUUCC&UGAGAUAAUUGUUGUUAUAUA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN77_c0_g1_1249_TPlot.pdf
TRINITY_DN77_c0_g1:1250	si_a448	TRINITY_DN77_c0_g1	1239	1259	1250	-25.50	-18.30	0.717647058823529	7.5	3-18,1257-1242	1-2,1259-1258[UP5];19-21,1241-1239[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCUAACAGCAAUUAUUUCCU&AUGAGAUAAUUGUUGUUAUAU	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN77_c0_g1_1250_TPlot.pdf
TRINITY_DN77_c0_g1:1251	si_a447	TRINITY_DN77_c0_g1	1240	1260	1251	-25.70	-18.30	0.712062256809339	8.5	4-19,1257-1242	1-3,1260-1258[UP5];20-21,1241-1240[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCUAACAGCAAUUAUUUCCUA&UAUGAGAUAAUUGUUGUUAUA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN77_c0_g1_1251_TPlot.pdf
TRINITY_DN77_c0_g1:1252	si_a446	TRINITY_DN77_c0_g1	1241	1261	1252	-25.50	-18.30	0.717647058823529	9.5	5-20,1257-1242	1-4,1261-1258[UP5];21-21,1241-1241[UP3]	.((((((((((((((((....&....)))))))))))))))).	CUAACAGCAAUUAUUUCCUAA&AUAUGAGAUAAUUGUUGUUAU	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN77_c0_g1_1252_TPlot.pdf
TRINITY_DN77_c0_g1:1907	si_a638	TRINITY_DN77_c0_g1	1896	1916	1907	-24.40	-16.10	0.659836065573771	7.5	1-4,1916-1913;6-13,1911-1904;15-20,1902-1897	5-5,1912-1912[SIL];14-14,1903-1903[SIL];21-21,1896-1896[UP3]	.((((((.((((((((.((((&)))).)))))))).)))))).	AGUAUUAGUCGAAAGAUUUGA&UCGAUUUUUUUGAGUAAUAUA	4	0.999999931281327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN77_c0_g1_1907_TPlot.pdf
TRINITY_DN77_c0_g1:2000	si_a326	TRINITY_DN77_c0_g1	1989	2009	2000	-26.20	-18.00	0.687022900763359	4	2-14,2008-1996;16-21,1994-1989	1-1,2009-2009[UP5];15-15,1995-1995[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	GACAGGAGAUAAAAAAAUUAG&AUGAUUUUUUUAUUCCUUGUC	4	0.999995906285367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN77_c0_g1_2000_TPlot.pdf
TRINITY_DN77_c0_g1:804	si_a97	TRINITY_DN77_c0_g1	793	813	804	-26.00	-17.30	0.665384615384615	10	3-15,811-799	1-2,813-812[UP5];16-21,798-793[UP3]	......(((((((((((((..&..)))))))))))))......	GAGAGUUCUUCGUUAUCUUGC&AAAAGGUAACGAAGAUAAAAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a97_TRINITY_DN77_c0_g1_804_TPlot.pdf
TRINITY_DN77_c0_g2:236	si_s82	TRINITY_DN77_c0_g2	225	247	236	-28.90	-22.00	0.761245674740484	7.5	1-8,247-240;9-20,237-226	x-x,239-238[BULt];21-21,225-225[UP3]	.((((((((((((..((((((((&))))))))--)))))))))))).	UAGAGGAAGAAAGAAGAAGGGAA&UUUCUUUC--CUUUCUUCUUCUU	3	0.999999881950583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN77_c0_g2_236_TPlot.pdf
TRINITY_DN77_c0_g2:237	si_s81	TRINITY_DN77_c0_g2	226	248	237	-28.90	-22.20	0.768166089965398	7.5	2-9,247-240;10-21,237-226	1-1,248-248[UP5];x-x,239-238[BULt]	((((((((((((..((((((((.&.))))))))--))))))))))))	AGAGGAAGAAAGAAGAAGGGAAG&UUUUCUUUC--CUUUCUUCUUCU	3	0.999999124105573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN77_c0_g2_237_TPlot.pdf
TRINITY_DN77_c0_g2:238	si_s87	TRINITY_DN77_c0_g2	227	247	238	-32.90	-24.10	0.732522796352584	3.5	1-13,247-235;14-17,233-230;19-21,229-227	x-x,234-234[BULt];18-18,x-x[BULq]	(((-((((.(((((((((((((&)))))))))))))-)))).)))	GAG-GAAGAAAGAAGAAGGGAA&UUCCUUUCUUCUU-CUUCGCUU	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN77_c0_g2_238_TPlot.pdf
TRINITY_DN77_c0_g2:239	si_a787	TRINITY_DN77_c0_g2	228	248	239	-26.30	-18.90	0.718631178707224	6.5	1-5,248-244;7-13,242-236;15-20,234-229	6-6,243-243[SIL];14-14,235-235[SIL];21-21,228-228[UP3]	.((((((.(((((((.(((((&))))).))))))).)))))).	AGGAAGAAAGAAGAAGGGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN77_c0_g2_239_TPlot.pdf
TRINITY_DN77_c0_g2:240	si_a786	TRINITY_DN77_c0_g2	229	249	240	-26.60	-20.00	0.75187969924812	5.5	1-6,249-244;8-14,242-236;16-21,234-229	7-7,243-243[SIL];15-15,235-235[SIL]	((((((.(((((((.((((((&)))))).))))))).))))))	GGAAGAAAGAAGAAGGGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.992393639817651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN77_c0_g2_240_TPlot.pdf
TRINITY_DN77_c0_g2:242	si_s83	TRINITY_DN77_c0_g2	230	250	242	-30.90	-23.60	0.763754045307443	4	1-5,250-246;7-17,245-235;18-21,233-230	6-6,x-x[BULq];x-x,234-234[BULt]	((((.(((((((((((-(((((&))))).)))))))))))-))))	GAAGAAAGAAGAAGGG-AAGAA&UUCUUUCCUUUCUUCUU-CUUC	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN77_c0_g2_242_TPlot.pdf
TRINITY_DN77_c0_g2:243	si_s77	TRINITY_DN77_c0_g2	230	252	243	-25.50	-18.50	0.725490196078431	8	3-13,250-240;14-21,237-230	1-2,252-251[UP5];x-x,239-238[BULt]	((((((((..(((((((((((..&..)))))))))))--))))))))	GAAGAAAGAAGAAGGGAAGAACA&UUUUUUUUCUUUC--CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN77_c0_g2_243_TPlot.pdf
TRINITY_DN77_c0_g2:256	si_s74	TRINITY_DN77_c0_g2	239	265	256	-25.00	-17.60	0.704	16	1-10,265-256;11-20,249-240	x-x,255-250[BULt];21-21,239-239[UP3]	.((((((((((......((((((((((&))))))))))------)))))))))).	AGAAGGGAAGAACAACAGAAAAAAUGG&CUAUUUUUUU------UCUUUCCUUUC	3	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN77_c0_g2_256_TPlot.pdf
TRINITY_DN77_c0_g2:259	si_s71	TRINITY_DN77_c0_g2	242	268	259	-25.70	-19.90	0.77431906614786	9	1-13,268-256;14-21,249-242	x-x,255-250[BULt]	((((((((......(((((((((((((&)))))))))))))------))))))))	AGGGAAGAACAACAGAAAAAAUGGAGG&CUUCUAUUUUUUU------UCUUUCCU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN77_c0_g2_259_TPlot.pdf
TRINITY_DN77_c0_g2:271	si_a784	TRINITY_DN77_c0_g2	259	280	271	-24.70	-16.60	0.672064777327935	7	1-8,280-273;10-11,271-270;12-21,268-259	9-9,272-272[SIL];x-x,269-269[BULt]	((((((((((.((.((((((((&)))))))).))-))))))))))	AAAAUGGAGGCAAAAGAAGGGU&ACUCUUCUAUU-UUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN77_c0_g2_271_TPlot.pdf
TRINITY_DN77_c0_g2:576	si_a506	TRINITY_DN77_c0_g2	563	585	576	-33.40	-23.30	0.697604790419162	10.5	1-11,585-575;12-14,572-570;17-20,567-564	x-x,574-573[BULt];15-16,569-568[SIL];21-21,563-563[UP3]	.((((..(((..(((((((((((&)))))))))))--)))..)))).	CUGCACGCCGAAGGGAAGACGGA&UUCGUCUUCCU--UGGAAUGUAA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN77_c0_g2_576_TPlot.pdf
TRINITY_DN77_c0_g2:577	si_a505	TRINITY_DN77_c0_g2	564	586	577	-33.30	-23.40	0.702702702702703	9.5	1-12,586-575;13-15,572-570;18-21,567-564	x-x,574-573[BULt];16-17,569-568[SIL]	((((..(((..((((((((((((&))))))))))))--)))..))))	UGCACGCCGAAGGGAAGACGGAG&UUUCGUCUUCCU--UGGAAUGUA	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN77_c0_g2_577_TPlot.pdf
TRINITY_DN77_c0_g2:581	si_s90	TRINITY_DN77_c0_g2	570	590	581	-35.30	-23.80	0.674220963172805	7	1-3,590-588;5-8,586-583;10-14,581-577;16-21,575-570	4-4,587-587[SIL];9-9,582-582[SIL];15-15,576-576[SIL]	((((((.(((((.((((.(((&))).)))).))))).))))))	CCGAAGGGAAGACGGAGCAGG&CUUUCUUCUUCUUCGCUUCGG	2	0.999999839473867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN77_c0_g2_581_TPlot.pdf
TRINITY_DN77_c0_g2:631	si_a142	TRINITY_DN77_c0_g2	620	640	631	-23.50	-15.40	0.65531914893617	14.5	7-18,634-623	1-6,640-635[UP5];19-21,622-620[UP3]	...((((((((((((......&......))))))))))))...	AUUAAACAGCAACGAGAGGAG&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999951994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN77_c0_g2_631_TPlot.pdf
TRINITY_DN77_c0_g2:635	si_s888	TRINITY_DN77_c0_g2	633	644	635	-26.80	-17.60	0.656716417910448	2	11-21,643-633	10-10,644-644[SIL]	(((((((((((.&.)))))))))))	GAGAGGAGGCCA&AAAAUAAAUAGG	2	0.999601828450175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN77_c0_g2_635_TPlot.pdf
TRINITY_DN77_c0_g2:646	si_s76	TRINITY_DN77_c0_g2	631	655	646	-23.60	-16.30	0.690677966101695	15.5	3-12,653-644;13-19,639-633	1-2,655-654[UP5];x-x,643-640[BULt];20-21,632-631[UP3]	..(((((((....((((((((((..&..))))))))))----)))))))..	ACGAGAGGAGGCCAAGAAGAGAAGA&AUUUUUUUUCUU----UCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN77_c0_g2_646_TPlot.pdf
TRINITY_DN77_c0_g2:647	si_s75	TRINITY_DN77_c0_g2	632	656	647	-24.00	-16.30	0.679166666666667	12.5	4-13,653-644;14-20,639-633	1-3,656-654[UP5];x-x,643-640[BULt];21-21,632-632[UP3]	.(((((((....((((((((((...&...))))))))))----))))))).	CGAGAGGAGGCCAAGAAGAGAAGAG&UAUUUUUUUUCUU----UCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN77_c0_g2_647_TPlot.pdf
TRINITY_DN77_c0_g2:648	si_s74	TRINITY_DN77_c0_g2	633	658	648	-25.00	-17.00	0.68	11.5	1-2,658-657;4-14,654-644;15-21,639-633	3-3,656-655[AILt];x-x,643-640[BULt]	(((((((....(((((((((((..((&))-.)))))))))))----)))))))	GAGAGGAGGCCAAGAAGAGAAGAGAG&CU-AUUUUUUUUCUU----UCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN77_c0_g2_648_TPlot.pdf
TRINITY_DN77_c0_g2:650	si_s89	TRINITY_DN77_c0_g2	637	659	650	-35.30	-24.50	0.694050991501416	7.5	1-10,659-650;12-15,649-646;16-20,642-638	11-11,x-x[BULq];x-x,645-643[BULt];21-21,637-637[UP3]	.(((((...((((-((((((((((&)))))))))).))))---))))).	GGAGGCCAAGAAG-AGAAGAGAGG&CCUUUCUUCUUCUUC---GCUUCG	2	0.999972588546334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN77_c0_g2_650_TPlot.pdf
TRINITY_DN77_c0_g2:651	si_s88	TRINITY_DN77_c0_g2	638	660	651	-34.80	-23.90	0.686781609195402	7.5	2-11,659-650;13-16,649-646;17-21,642-638	1-1,660-660[UP5];12-12,x-x[BULq];x-x,645-643[BULt]	(((((...((((-((((((((((.&.)))))))))).))))---)))))	GAGGCCAAGAAG-AGAAGAGAGGC&UCCUUUCUUCUUCUUC---GCUUC	2	0.999999138489842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN77_c0_g2_651_TPlot.pdf
TRINITY_DN77_c0_g2:656	si_s83	TRINITY_DN77_c0_g2	646	664	656	-30.90	-20.60	0.666666666666667	7	1-4,664-661;7-16,659-650;18-21,649-646	5-6,660-660[AILq];17-17,x-x[BULq]	((((-((((((((((.-((((&))))..)))))))))).))))	GAAG-AGAAGAGAGGC-GGAA&UUCUUUCCUUUCUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN77_c0_g2_656_TPlot.pdf
TRINITY_DN77_c0_g2:659	si_s80	TRINITY_DN77_c0_g2	648	676	659	-28.20	-19.10	0.677304964539007	18	1-9,676-668;10-20,659-649	x-x,667-660[BULt];21-21,648-648[UP3]	.(((((((((((........(((((((((&)))))))))--------))))))))))).	AGAGAAGAGAGGCGGAACAAAAAGAAAAA&UUUUUCUUU--------CCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN77_c0_g2_659_TPlot.pdf
TRINITY_DN77_c0_g2:668	si_s79	TRINITY_DN77_c0_g2	649	677	668	-26.20	-19.10	0.729007633587786	18	2-10,676-668;11-21,659-649	1-1,677-677[UP5];x-x,667-660[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	GAGAAGAGAGGCGGAACAAAAAGAAAAAG&UUUUUUCUUU--------CCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN77_c0_g2_668_TPlot.pdf
TRINITY_DN77_c0_g2:669	si_s78	TRINITY_DN77_c0_g2	650	678	669	-26.20	-19.70	0.751908396946565	17.5	1-11,678-668;12-21,659-650	x-x,667-660[BULt]	((((((((((........(((((((((((&)))))))))))--------))))))))))	AGAAGAGAGGCGGAACAAAAAGAAAAAGA&UUUUUUUCUUU--------CCUUUCUUCU	3	0.999999999988671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN77_c0_g2_669_TPlot.pdf
TRINITY_DN77_c0_g2:670	si_s77	TRINITY_DN77_c0_g2	651	679	670	-25.50	-19.30	0.756862745098039	17.5	1-12,679-668;13-21,659-651	x-x,667-660[BULt]	(((((((((........((((((((((((&))))))))))))--------)))))))))	GAAGAGAGGCGGAACAAAAAGAAAAAGAA&UUUUUUUUCUUU--------CCUUUCUUC	3	0.99999999996183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN77_c0_g2_670_TPlot.pdf
TRINITY_DN7802_c0_g1:2502	si_a722	TRINITY_DN7802_c0_g1	2491	2512	2502	-34.70	-25.70	0.740634005763689	11.5	3-6,2510-2507;9-20,2503-2492	1-2,2512-2511[UP5];7-8,2506-2504[AILt];21-21,2491-2491[UP3]	.((((((((((((...((((..&..))))-..)))))))))))).	UAGGAUGCCCGGGGAUACGAAU&AAUCGU-UACUCGGGCAUCUUU	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN7802_c0_g1_2502_TPlot.pdf
TRINITY_DN7802_c0_g1:2505	si_a719	TRINITY_DN7802_c0_g1	2494	2515	2505	-34.60	-24.00	0.69364161849711	15.5	6-9,2510-2507;12-21,2503-2494	1-5,2515-2511[UP5];10-11,2506-2504[AILt]	((((((((((...((((.....&.....))))-..))))))))))	GAUGCCCGGGGAUACGAAUAGU&AAUAAUCGU-UACUCGGGCAUC	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a719_TRINITY_DN7802_c0_g1_2505_TPlot.pdf
TRINITY_DN7802_c0_g1:371	si_s731	TRINITY_DN7802_c0_g1	359	387	371	-34.30	-22.50	0.65597667638484	17	2-7,386-381;8-14,373-367;15-20,365-360	1-1,387-387[UP5];x-x,380-374[BULt];x-x,366-366[BULt];21-21,359-359[UP3]	.((((((.(((((((.......((((((.&.))))))-------)))))))-)))))).	CCUAUUCAACCCGUCGAAGACUUAGAUAU&UUAUCUA-------GACGGGU-GAAUAGA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s731_TRINITY_DN7802_c0_g1_371_TPlot.pdf
TRINITY_DN7805_c0_g1:584	si_a630	TRINITY_DN7805_c0_g1	575	593	584	-25.80	-17.60	0.682170542635659	6	1-11,593-583;14-21,582-575	12-13,x-x[BULq]	((((((((--(((((((((((&)))))))))))..))))))))	UCAAGAAA--CGACAUGGUAU&GUAUUAUGUCGAUUUUUUUGA	2	0.998291993200065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN7805_c0_g1_584_TPlot.pdf
TRINITY_DN780_c0_g1:2217	si_a418	TRINITY_DN780_c0_g1	2206	2226	2217	-21.20	-14.20	0.669811320754717	6.5	2-3,2225-2224;6-12,2221-2215;14-21,2213-2206	1-1,2226-2226[UP5];4-5,2223-2222[SIL];13-13,2214-2214[SIL]	((((((((.(((((((..((.&.))..))))))).))))))))	AUCCUGUACUUAUUUAUUUAA&AUAUUUAAAUAAAUAUAGGAU	0	0.106015225812807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN780_c0_g1_2217_TPlot.pdf
TRINITY_DN7810_c0_g1:2919	si_a441	TRINITY_DN7810_c0_g1	2904	2928	2919	-29.30	-19.30	0.658703071672355	13	1-9,2928-2920;11-11,2918-2918;12-21,2913-2904	10-10,2919-2919[SIL];x-x,2917-2914[BULt]	((((((((((....(.(((((((((&))))))))).)----))))))))))	GACAAUUGUCAGUUUGAUAUCUAGC&GUUGGAUAUGA----GAUAAUUGUU	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN7810_c0_g1_2919_TPlot.pdf
TRINITY_DN7813_c0_g1:1049	si_s524	TRINITY_DN7813_c0_g1	1038	1058	1049	-23.90	-15.90	0.665271966527197	7.5	2-9,1057-1050;12-13,1047-1046;15-21,1044-1038	1-1,1058-1058[UP5];10-11,1049-1048[SIL];14-14,1045-1045[SIL]	(((((((.((..((((((((.&.))))))))..)).)))))))	UCAAAAGAGAGGUCGGAUUAU&UUAAUUCGAAAUCAUUUUUGA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN7813_c0_g1_1049_TPlot.pdf
TRINITY_DN7813_c0_g1:1744	si_a358	TRINITY_DN7813_c0_g1	1733	1752	1744	-29.10	-20.12	0.691408934707904	10.5	1-7,1752-1746;12-20,1742-1734	8-11,1745-1743[AILq];21-21,1733-1733[UP3]	.(((((((((...-(((((((&)))))))....))))))))).	AGAUCCGGUCUAU-UAGGAUU&AAUUCUAUUUUGAUCGGAUCA	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN7813_c0_g1_1744_TPlot.pdf
TRINITY_DN7813_c0_g1:1966	si_s95	TRINITY_DN7813_c0_g1	1955	1975	1966	-36.30	-23.60	0.650137741046832	4	1-12,1975-1964;14-16,1962-1960;18-21,1958-1955	13-13,1963-1963[SIL];17-17,1959-1959[SIL]	((((.(((.((((((((((((&)))))))))))).))).))))	CCAGAUUGCAGCGAAGAAGAG&UUCUUCUUCGCUUCGGAUUGG	4	0.999999752886627	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN7813_c0_g1_1966_TPlot.pdf
TRINITY_DN7813_c0_g1:2298	si_s70	TRINITY_DN7813_c0_g1	2287	2307	2298	-25.80	-18.60	0.72093023255814	8	2-19,2306-2289	1-1,2307-2307[UP5];20-21,2288-2287[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	ACAAGGAAGGGAAGUAGGAGG&ACUUCUAUUUUUUUUCUUUCC	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN7813_c0_g1_2298_TPlot.pdf
TRINITY_DN7813_c0_g1:2300	si_s68	TRINITY_DN7813_c0_g1	2289	2309	2300	-23.10	-18.60	0.805194805194805	9	4-21,2306-2289	1-3,2309-2307[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAGGAAGGGAAGUAGGAGGGC&CAACUUCUAUUUUUUUUCUUU	2	0.870123127061404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7813_c0_g1_2300_TPlot.pdf
TRINITY_DN7815_c0_g1:2554	si_a638	TRINITY_DN7815_c0_g1	2543	2565	2554	-24.40	-17.30	0.709016393442623	12.5	1-8,2565-2558;9-18,2555-2546	x-x,2557-2556[BULt];19-21,2545-2543[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	GAGAUUGCUCGAGUGGAGGUCGA&UCGAUUUU--UUUGAGUAAUAUA	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN7815_c0_g1_2554_TPlot.pdf
TRINITY_DN7815_c0_g1:725	si_a220	TRINITY_DN7815_c0_g1	714	734	725	-25.10	-17.90	0.713147410358566	13.5	6-18,729-717	1-5,734-730[UP5];19-21,716-714[UP3]	...(((((((((((((.....&.....)))))))))))))...	AGCAGAGACGUGAGUUGGGGC&AAUUAAACUCAUGUUUCUAUA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN7815_c0_g1_725_TPlot.pdf
TRINITY_DN781_c0_g1:1176	si_a785	TRINITY_DN781_c0_g1	1164	1185	1176	-25.90	-17.00	0.656370656370656	5	2-14,1184-1172;15-19,1170-1166	1-1,1185-1185[UP5];x-x,1171-1171[BULt];20-21,1165-1164[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	UUAAAUACGAAAGAUAGAAGAC&CUCUUCUAUUUUUC-UAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN781_c0_g1_1176_TPlot.pdf
TRINITY_DN781_c0_g1:1179	si_a782	TRINITY_DN781_c0_g1	1167	1188	1179	-26.40	-17.90	0.678030303030303	3.5	1-3,1188-1186;5-17,1184-1172;18-21,1170-1167	4-4,1185-1185[SIL];x-x,1171-1171[BULt]	((((.(((((((((((((.(((&))).)))))))))))))-))))	AAUACGAAAGAUAGAAGACUUG&CAACUCUUCUAUUUUUC-UAUU	4	0.999999411941571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN781_c0_g1_1179_TPlot.pdf
TRINITY_DN781_c1_g1:1207	si_a325	TRINITY_DN781_c1_g1	1194	1216	1207	-25.90	-17.08	0.659459459459459	9	1-12,1216-1205;15-17,1200-1198;19-21,1196-1194	13-14,1204-1201[AILt];18-18,1197-1197[SIL]	(((.(((....((((((((((((&))))))))))))--..))).)))	ACAUGGACAAGAAAAGAGUCAUG&CAUGAUUUUUUU--AUUCCUUGU	3	0.999999893314632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN781_c1_g1_1207_TPlot.pdf
TRINITY_DN781_c1_g1:1208	si_a324	TRINITY_DN781_c1_g1	1195	1217	1208	-27.50	-18.98	0.690181818181818	7	1-13,1217-1205;16-18,1200-1198;20-21,1196-1195	14-15,1204-1201[AILt];19-19,1197-1197[SIL]	((.(((....(((((((((((((&)))))))))))))--..))).))	CAUGGACAAGAAAAGAGUCAUGG&CCAUGAUUUUUUU--AUUCCUUG	3	0.997742285316267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN781_c1_g1_1208_TPlot.pdf
TRINITY_DN781_c1_g1:1209	si_a323	TRINITY_DN781_c1_g1	1196	1218	1209	-26.80	-19.18	0.715671641791045	8	1-14,1218-1205;17-19,1200-1198	15-16,1204-1201[AILt];20-21,1197-1196[UP3]	..(((....((((((((((((((&))))))))))))))--..)))..	AUGGACAAGAAAAGAGUCAUGGA&UCCAUGAUUUUUUU--AUUCCUU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN781_c1_g1_1209_TPlot.pdf
TRINITY_DN781_c1_g1:1210	si_a322	TRINITY_DN781_c1_g1	1197	1219	1210	-27.00	-19.18	0.71037037037037	8	2-15,1218-1205;18-20,1200-1198	1-1,1219-1219[UP5];16-17,1204-1201[AILt];21-21,1197-1197[UP3]	.(((....((((((((((((((.&.))))))))))))))--..))).	UGGACAAGAAAAGAGUCAUGGAC&AUCCAUGAUUUUUUU--AUUCCU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN781_c1_g1_1210_TPlot.pdf
TRINITY_DN781_c1_g1:1211	si_a321	TRINITY_DN781_c1_g1	1198	1220	1211	-26.70	-18.78	0.703370786516854	9	3-16,1218-1205;19-21,1200-1198	1-2,1220-1219[UP5];17-18,1204-1201[AILt]	(((....((((((((((((((..&..))))))))))))))--..)))	GGACAAGAAAAGAGUCAUGGACA&UAUCCAUGAUUUUUUU--AUUCC	3	0.990873525157738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN781_c1_g1_1211_TPlot.pdf
TRINITY_DN781_c1_g1:1212	si_a320	TRINITY_DN781_c1_g1	1201	1221	1212	-24.40	-16.60	0.680327868852459	10.5	4-17,1218-1205	1-3,1221-1219[UP5];18-21,1204-1201[UP3]	....((((((((((((((...&...))))))))))))))....	CAAGAAAAGAGUCAUGGACAU&UUAUCCAUGAUUUUUUUAUUC	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN781_c1_g1_1212_TPlot.pdf
TRINITY_DN781_c1_g1:1214	si_a318	TRINITY_DN781_c1_g1	1203	1223	1214	-22.50	-16.60	0.737777777777778	12	6-19,1218-1205	1-5,1223-1219[UP5];20-21,1204-1203[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGAAAAGAGUCAUGGACAUCA&AUUUAUCCAUGAUUUUUUUAU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN781_c1_g1_1214_TPlot.pdf
TRINITY_DN781_c1_g1:1215	si_a317	TRINITY_DN781_c1_g1	1204	1222	1215	-24.30	-16.80	0.691358024691358	8	1-3,1222-1220;7-20,1218-1205	4-6,1219-1219[AILq];21-21,1204-1204[UP3]	.((((((((((((((.--(((&)))...)))))))))))))).	GAAAAGAGUCAUGGAC--AUC&GAUUUAUCCAUGAUUUUUUUA	3	0.999991880123019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN781_c1_g1_1215_TPlot.pdf
TRINITY_DN781_c1_g1:1309	si_a325	TRINITY_DN781_c1_g1	1296	1318	1309	-25.90	-17.08	0.659459459459459	9	1-12,1318-1307;15-17,1302-1300;19-21,1298-1296	13-14,1306-1303[AILt];18-18,1299-1299[SIL]	(((.(((....((((((((((((&))))))))))))--..))).)))	ACAUGGACAAGAAAAGAGUCAUG&CAUGAUUUUUUU--AUUCCUUGU	3	0.999999897547806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN781_c1_g1_1309_TPlot.pdf
TRINITY_DN781_c1_g1:1310	si_a324	TRINITY_DN781_c1_g1	1297	1319	1310	-27.50	-18.98	0.690181818181818	7	1-13,1319-1307;16-18,1302-1300;20-21,1298-1297	14-15,1306-1303[AILt];19-19,1299-1299[SIL]	((.(((....(((((((((((((&)))))))))))))--..))).))	CAUGGACAAGAAAAGAGUCAUGG&CCAUGAUUUUUUU--AUUCCUUG	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN781_c1_g1_1310_TPlot.pdf
TRINITY_DN781_c1_g1:1311	si_a323	TRINITY_DN781_c1_g1	1298	1320	1311	-26.80	-19.18	0.715671641791045	8	1-14,1320-1307;17-19,1302-1300	15-16,1306-1303[AILt];20-21,1299-1298[UP3]	..(((....((((((((((((((&))))))))))))))--..)))..	AUGGACAAGAAAAGAGUCAUGGA&UCCAUGAUUUUUUU--AUUCCUU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN781_c1_g1_1311_TPlot.pdf
TRINITY_DN781_c1_g1:1312	si_a322	TRINITY_DN781_c1_g1	1299	1321	1312	-27.00	-19.18	0.71037037037037	8	2-15,1320-1307;18-20,1302-1300	1-1,1321-1321[UP5];16-17,1306-1303[AILt];21-21,1299-1299[UP3]	.(((....((((((((((((((.&.))))))))))))))--..))).	UGGACAAGAAAAGAGUCAUGGAC&AUCCAUGAUUUUUUU--AUUCCU	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN781_c1_g1_1312_TPlot.pdf
TRINITY_DN781_c1_g1:1313	si_a321	TRINITY_DN781_c1_g1	1300	1322	1313	-26.70	-18.78	0.703370786516854	9	3-16,1320-1307;19-21,1302-1300	1-2,1322-1321[UP5];17-18,1306-1303[AILt]	(((....((((((((((((((..&..))))))))))))))--..)))	GGACAAGAAAAGAGUCAUGGACA&UAUCCAUGAUUUUUUU--AUUCC	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN781_c1_g1_1313_TPlot.pdf
TRINITY_DN781_c1_g1:1314	si_a320	TRINITY_DN781_c1_g1	1303	1323	1314	-24.40	-16.60	0.680327868852459	10.5	4-17,1320-1307	1-3,1323-1321[UP5];18-21,1306-1303[UP3]	....((((((((((((((...&...))))))))))))))....	CAAGAAAAGAGUCAUGGACAU&UUAUCCAUGAUUUUUUUAUUC	3	0.999993094182893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN781_c1_g1_1314_TPlot.pdf
TRINITY_DN781_c1_g1:1317	si_a317	TRINITY_DN781_c1_g1	1306	1324	1317	-24.30	-16.80	0.691358024691358	8	1-3,1324-1322;7-20,1320-1307	4-6,1321-1321[AILq];21-21,1306-1306[UP3]	.((((((((((((((.--(((&)))...)))))))))))))).	GAAAAGAGUCAUGGAC--AUC&GAUUUAUCCAUGAUUUUUUUA	3	0.999995836868361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN781_c1_g1_1317_TPlot.pdf
TRINITY_DN781_c1_g1:1403	si_s77	TRINITY_DN781_c1_g1	1392	1412	1403	-25.50	-17.40	0.68235294117647	7.5	1-10,1412-1403;12-18,1401-1395	11-11,1402-1402[SIL];19-21,1394-1392[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	UCUGAAAGGACAGGAAAAGAG&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN781_c1_g1_1403_TPlot.pdf
TRINITY_DN781_c1_g1:1404	si_s76	TRINITY_DN781_c1_g1	1393	1413	1404	-23.60	-18.70	0.792372881355932	7	1-11,1413-1403;13-19,1401-1395	12-12,1402-1402[SIL];20-21,1394-1393[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	CUGAAAGGACAGGAAAAGAGU&AUUUUUUUUCUUUCCUUUCUU	3	0.999999984089789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN781_c1_g1_1404_TPlot.pdf
TRINITY_DN781_c1_g1:1405	si_s75	TRINITY_DN781_c1_g1	1394	1414	1405	-24.00	-18.70	0.779166666666667	6	2-12,1413-1403;14-20,1401-1395	1-1,1414-1414[UP5];13-13,1402-1402[SIL];21-21,1394-1394[UP3]	.(((((((.(((((((((((.&.))))))))))).))))))).	UGAAAGGACAGGAAAAGAGUC&UAUUUUUUUUCUUUCCUUUCU	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN781_c1_g1_1405_TPlot.pdf
TRINITY_DN781_c1_g1:1406	si_s74	TRINITY_DN781_c1_g1	1395	1415	1406	-25.00	-18.30	0.732	7	3-13,1413-1403;15-21,1401-1395	1-2,1415-1414[UP5];14-14,1402-1402[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	GAAAGGACAGGAAAAGAGUCA&CUAUUUUUUUUCUUUCCUUUC	3	0.999999995901495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN781_c1_g1_1406_TPlot.pdf
TRINITY_DN781_c1_g1:1495	si_s79	TRINITY_DN781_c1_g1	1484	1504	1495	-26.20	-18.20	0.694656488549618	14.5	8-21,1497-1484	1-7,1504-1498[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAGAGAGGAAGCAGGCUU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN781_c1_g1_1495_TPlot.pdf
TRINITY_DN781_c1_g1:1496	si_s78	TRINITY_DN781_c1_g1	1485	1505	1496	-26.20	-17.40	0.66412213740458	16.5	9-21,1497-1485	1-8,1505-1498[UP5]	(((((((((((((........&........)))))))))))))	AGAAGAGAGGAAGCAGGCUUA&UUUUUUUCUUUCCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN781_c1_g1_1496_TPlot.pdf
TRINITY_DN7820_c0_g1:625	si_s102	TRINITY_DN7820_c0_g1	614	634	625	-34.10	-23.40	0.686217008797654	9	1-13,634-622	14-21,621-614[UP3]	........(((((((((((((&)))))))))))))........	AAGUCCGGCAGUCCGAAGCGA&UCGCUUCGGAUUGGAAAAUAG	4	0.65815664376376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s102_TRINITY_DN7820_c0_g1_625_TPlot.pdf
TRINITY_DN7820_c0_g1:626	si_s101	TRINITY_DN7820_c0_g1	615	635	626	-32.50	-24.30	0.747692307692308	8	1-14,635-622	15-21,621-615[UP3]	.......((((((((((((((&)))))))))))))).......	AGUCCGGCAGUCCGAAGCGAA&UUCGCUUCGGAUUGGAAAAUA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN7820_c0_g1_626_TPlot.pdf
TRINITY_DN7820_c0_g1:633	si_s94	TRINITY_DN7820_c0_g1	622	642	633	-35.50	-26.30	0.740845070422535	11.5	7-21,636-622	1-6,642-637[UP5]	(((((((((((((((......&......)))))))))))))))	CAGUCCGAAGCGAAGCUCCUG&CUUCUUCUUCGCUUCGGAUUG	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN7820_c0_g1_633_TPlot.pdf
TRINITY_DN7820_c0_g1:665	si_s320	TRINITY_DN7820_c0_g1	654	673	665	-31.00	-22.40	0.72258064516129	7	1-5,673-669;7-18,668-657	6-6,x-x[BULq];19-21,656-654[UP3]	...((((((((((((-(((((&))))).))))))))))))...	CAAGUUUGUAAUAAG-GGGAC&GUCCUUCUUGUUACAAACAUA	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s320_TRINITY_DN7820_c0_g1_665_TPlot.pdf
TRINITY_DN7820_c0_g1:666	si_s319	TRINITY_DN7820_c0_g1	655	674	666	-31.30	-22.50	0.718849840255591	7	2-6,673-669;8-19,668-657	1-1,674-674[UP5];7-7,x-x[BULq];20-21,656-655[UP3]	..((((((((((((-(((((.&.))))).))))))))))))..	AAGUUUGUAAUAAG-GGGACG&UGUCCUUCUUGUUACAAACAU	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s319_TRINITY_DN7820_c0_g1_666_TPlot.pdf
TRINITY_DN7820_c0_g1:667	si_s318	TRINITY_DN7820_c0_g1	656	675	667	-32.80	-22.90	0.698170731707317	7	2-7,674-669;9-20,668-657	1-1,675-675[UP5];8-8,x-x[BULq];21-21,656-656[UP3]	.((((((((((((-((((((.&.)))))).)))))))))))).	AGUUUGUAAUAAG-GGGACGA&CUGUCCUUCUUGUUACAAACA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN7820_c0_g1_667_TPlot.pdf
TRINITY_DN7822_c1_g4:1248	si_a466	TRINITY_DN7822_c1_g4	1237	1257	1248	-21.50	-15.80	0.734883720930233	5.5	2-7,1256-1251;9-20,1249-1238	1-1,1257-1257[UP5];8-8,1250-1250[SIL];21-21,1237-1237[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	UCAAUAGUUGCAUUUUAUAUU&UAUAUAAUAUGUAAUUAUUGU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN7822_c1_g4_1248_TPlot.pdf
TRINITY_DN7822_c1_g4:1255	si_a464	TRINITY_DN7822_c1_g4	1239	1264	1255	-19.60	-14.70	0.75	13	1-11,1264-1254;12-21,1248-1239	x-x,1253-1249[BULt]	((((((((((.....(((((((((((&)))))))))))-----))))))))))	AAUAGUUGCAUUUUAUAUUGUGUAUA&UAUAUAUAAUA-----UGUAAUUAUU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN7822_c1_g4_1255_TPlot.pdf
TRINITY_DN7822_c1_g4:1256	si_a463	TRINITY_DN7822_c1_g4	1240	1265	1256	-19.70	-14.10	0.715736040609137	14	2-12,1264-1254;13-21,1248-1240	1-1,1265-1265[UP5];x-x,1253-1249[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	AUAGUUGCAUUUUAUAUUGUGUAUAU&UUAUAUAUAAUA-----UGUAAUUAU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN7822_c1_g4_1256_TPlot.pdf
TRINITY_DN7822_c1_g4:752	si_a633	TRINITY_DN7822_c1_g4	741	761	752	-26.40	-20.60	0.78030303030303	8	3-10,759-752;12-21,750-741	1-2,761-760[UP5];11-11,751-751[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UGCUCAAAGACAUCGGCGUUG&UUAUGUCGAUUUUUUUGAGUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN7822_c1_g4_752_TPlot.pdf
TRINITY_DN7822_c1_g4:890	si_a67	TRINITY_DN7822_c1_g4	879	903	890	-27.20	-18.22	0.669852941176471	17.5	1-9,903-895;14-21,886-879	10-13,894-887[AILt]	((((((((........(((((((((&)))))))))----....))))))))	GAGAAACAUUACAAGAGAGAGAGGC&GCUUCUUUC----AAAUUGUUUUUC	4	0.999999999744379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN7822_c1_g4_890_TPlot.pdf
TRINITY_DN7822_c1_g4:951	si_a123	TRINITY_DN7822_c1_g4	939	961	951	-26.60	-19.10	0.718045112781955	9.5	1-4,961-958;5-11,956-950;12-19,948-941	x-x,957-957[BULt];x-x,949-949[BULt];20-21,940-939[UP3]	..((((((((.(((((((.((((&))))-)))))))-))))))))..	AGGCUAUUGCGUGUAAGGUCAAG&CUUG-UUUUAUA-GCAAUAGUAA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN7822_c1_g4_951_TPlot.pdf
TRINITY_DN7824_c0_g1:521	si_a142	TRINITY_DN7824_c0_g1	510	530	521	-23.50	-15.90	0.676595744680851	11.5	3-17,528-514	1-2,530-529[UP5];18-21,513-510[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGUUGGCAGCAAUGAUUGGGA&AAUUAAUCGUUGUUGUUUUAA	0	0.432682709613201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN7824_c0_g1_521_TPlot.pdf
TRINITY_DN7824_c0_g1:522	si_a141	TRINITY_DN7824_c0_g1	511	531	522	-23.80	-15.90	0.668067226890756	12.5	4-18,528-514	1-3,531-529[UP5];19-21,513-511[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUUGGCAGCAAUGAUUGGGAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999968825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN7824_c0_g1_522_TPlot.pdf
TRINITY_DN7825_c0_g2:1219	si_s512	TRINITY_DN7825_c0_g2	1208	1228	1219	-24.80	-17.70	0.713709677419355	8	2-12,1227-1217;15-20,1214-1209	1-1,1228-1228[UP5];13-14,1216-1215[SIL];21-21,1208-1208[UP3]	.((((((..(((((((((((.&.)))))))))))..)))))).	ACGAAUUUUGGGUAUGGGAUA&AAUUCUAUAUUCUUAAUUCGA	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN7825_c0_g2_1219_TPlot.pdf
TRINITY_DN7825_c0_g2:1225	si_s459	TRINITY_DN7825_c0_g2	1214	1234	1225	-29.30	-20.40	0.696245733788396	9.5	5-20,1230-1215	1-4,1234-1231[UP5];21-21,1214-1214[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUUGGGUAUGGGAUAAUCUUU&AACAAUUAUCUCAUAUCCAAC	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN7825_c0_g2_1225_TPlot.pdf
TRINITY_DN7825_c0_g2:1227	si_s457	TRINITY_DN7825_c0_g2	1216	1236	1227	-30.00	-19.50	0.65	12	7-21,1230-1216	1-6,1236-1231[UP5]	(((((((((((((((......&......)))))))))))))))	UGGGUAUGGGAUAAUCUUUUG&ACAACAAUUAUCUCAUAUCCA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN7825_c0_g2_1227_TPlot.pdf
TRINITY_DN7827_c0_g1:2892	si_a549	TRINITY_DN7827_c0_g1	2881	2907	2892	-29.50	-20.74	0.703050847457627	18.5	1-7,2907-2901;10-21,2892-2881	8-9,2900-2893[AILt]	((((((((((((........(((((((&)))))))------..))))))))))))	GGGGAUGGAGAGUGAGCGGGAGAUUGA&UCAAUCU------AUUUCUUUAUCUCC	2	0.786329988256871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN7827_c0_g1_2892_TPlot.pdf
TRINITY_DN7827_c0_g1:2965	si_s578	TRINITY_DN7827_c0_g1	2954	2974	2965	-27.00	-19.10	0.707407407407407	7	1-5,2974-2970;8-18,2967-2957	6-7,2969-2968[SIL];19-21,2956-2954[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	GAUCAUGAUUUUUUGUUUCCU&AGGAAUAAAAAAAUCAUGGAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s578_TRINITY_DN7827_c0_g1_2965_TPlot.pdf
TRINITY_DN7827_c0_g1:5204	si_a573	TRINITY_DN7827_c0_g1	5193	5213	5204	-28.70	-19.30	0.672473867595819	7.5	1-3,5213-5211;5-8,5210-5207;9-19,5205-5195	4-4,x-x[BULq];x-x,5206-5206[BULt];20-21,5194-5193[UP3]	..(((((((((((.((((-(((&))).))))-)))))))))))..	UCGUUACAGGCAUAACGA-UCA&UGAAUCGU-AUGUUUGUAACAA	3	0.831607846608127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a573_TRINITY_DN7827_c0_g1_5204_TPlot.pdf
TRINITY_DN7827_c0_g1:5205	si_a572	TRINITY_DN7827_c0_g1	5194	5214	5205	-30.40	-20.90	0.6875	6.5	1-4,5214-5211;6-9,5210-5207;10-20,5205-5195	5-5,x-x[BULq];x-x,5206-5206[BULt];21-21,5194-5194[UP3]	.(((((((((((.((((-((((&)))).))))-))))))))))).	CGUUACAGGCAUAACGA-UCAU&GUGAAUCGU-AUGUUUGUAACA	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN7827_c0_g1_5205_TPlot.pdf
TRINITY_DN7827_c1_g1:879	si_s815	TRINITY_DN7827_c1_g1	869	888	879	-25.00	-18.20	0.728	4.5	1-14,888-875;16-19,874-871	15-15,x-x[BULq];20-21,870-869[UP3]	..((((-((((((((((((((&)))))))))))))).))))..	CACAUU-UUAAGAAGAGGUAG&UUACCUUUUCUUAAUAAUGAA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN7827_c1_g1_879_TPlot.pdf
TRINITY_DN7828_c1_g1:2560	si_a756	TRINITY_DN7828_c1_g1	2549	2569	2560	-33.10	-21.70	0.655589123867069	8.5	1-7,2569-2563;10-12,2560-2558;14-14,2556-2556;17-20,2553-2550	8-9,2562-2561[SIL];13-13,2557-2557[SIL];15-16,2555-2554[SIL];21-21,2549-2549[UP3]	.((((..(.(((..(((((((&)))))))..))).)..)))).	UUCGAUUAGCCAUUGGAGGUU&AACCUCCUUUGGGUUUUUGAU	4	0.999999999658725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN7828_c1_g1_2560_TPlot.pdf
TRINITY_DN7829_c0_g1:119	si_s446	TRINITY_DN7829_c0_g1	108	128	119	-21.30	-14.60	0.685446009389671	6	1-4,128-125;6-17,123-112	5-5,124-124[SIL];18-21,111-108[UP3]	....((((((((((((.((((&)))).))))))))))))....	CUACUGUUGUUAUAUAAAAUA&UAUUAUAUAUAACAACAAUUA	4	0.931676853406267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN7829_c0_g1_119_TPlot.pdf
TRINITY_DN782_c0_g1:1509	si_s495	TRINITY_DN782_c0_g1	1498	1518	1509	-19.80	-13.80	0.696969696969697	7	1-9,1518-1510;11-17,1508-1502	10-10,1509-1509[SIL];18-21,1501-1498[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AAUAGUUUUGUGUAUGUUUAA&UUAAAUAUAAACAAAACAAUU	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s495_TRINITY_DN782_c0_g1_1509_TPlot.pdf
TRINITY_DN782_c0_g1:1510	si_s494	TRINITY_DN782_c0_g1	1499	1519	1510	-19.80	-14.20	0.717171717171717	6.5	1-10,1519-1510;12-18,1508-1502	11-11,1509-1509[SIL];19-21,1501-1499[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	AUAGUUUUGUGUAUGUUUAAG&UUUAAAUAUAAACAAAACAAU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN782_c0_g1_1510_TPlot.pdf
TRINITY_DN782_c0_g1:1511	si_s493	TRINITY_DN782_c0_g1	1500	1520	1511	-19.80	-15.80	0.797979797979798	6	1-11,1520-1510;13-19,1508-1502	12-12,1509-1509[SIL];20-21,1501-1500[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UAGUUUUGUGUAUGUUUAAGU&AUUUAAAUAUAAACAAAACAA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN782_c0_g1_1511_TPlot.pdf
TRINITY_DN782_c0_g1:1512	si_s492	TRINITY_DN782_c0_g1	1501	1521	1512	-20.10	-17.10	0.850746268656716	4	1-12,1521-1510;14-20,1508-1502	13-13,1509-1509[SIL];21-21,1501-1501[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	AGUUUUGUGUAUGUUUAAGUA&UAUUUAAAUAUAAACAAAACA	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN782_c0_g1_1512_TPlot.pdf
TRINITY_DN782_c0_g1:1513	si_s491	TRINITY_DN782_c0_g1	1502	1522	1513	-19.50	-17.30	0.887179487179487	3	1-13,1522-1510;15-21,1508-1502	14-14,1509-1509[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GUUUUGUGUAUGUUUAAGUAA&UUAUUUAAAUAUAAACAAAAC	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN782_c0_g1_1513_TPlot.pdf
TRINITY_DN782_c0_g1:1515	si_s489	TRINITY_DN782_c0_g1	1504	1524	1515	-17.90	-13.60	0.759776536312849	6	3-15,1522-1510;17-21,1508-1504	1-2,1524-1523[UP5];16-16,1509-1509[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	UUUGUGUAUGUUUAAGUAAUA&AUUUAUUUAAAUAUAAACAAA	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN782_c0_g1_1515_TPlot.pdf
TRINITY_DN782_c1_g1:1660	si_a69	TRINITY_DN782_c1_g1	1649	1668	1660	-24.00	-15.72	0.655	9	1-8,1668-1661;13-21,1657-1649	9-12,1660-1658[AILq]	(((((((((...-((((((((&))))))))....)))))))))	AUGAAAAACUCA-UGGAAGAA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN782_c1_g1_1660_TPlot.pdf
TRINITY_DN782_c1_g1:413	si_a789	TRINITY_DN782_c1_g1	402	420	413	-24.80	-16.80	0.67741935483871	9.5	1-5,420-416;8-18,415-405	6-7,x-x[BULq];19-21,404-402[UP3]	...(((((((((((--(((((&)))))..)))))))))))...	CCAGGAAAGUGGAA--GUAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999998283759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN782_c1_g1_413_TPlot.pdf
TRINITY_DN782_c1_g1:416	si_a786	TRINITY_DN782_c1_g1	405	423	416	-26.60	-18.10	0.680451127819549	8	1-2,423-422;4-8,420-416;11-21,415-405	3-3,421-421[SIL];9-10,x-x[BULq]	(((((((((((--(((((.((&)).)))))..)))))))))))	GGAAAGUGGAA--GUAGAUGA&UCUUCUAUUUUUCUAUUUUCC	4	0.999999999945646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN782_c1_g1_416_TPlot.pdf
TRINITY_DN782_c1_g1:692	si_s87	TRINITY_DN782_c1_g1	679	701	692	-32.90	-22.00	0.668693009118541	9	2-11,700-691;12-18,688-682	1-1,701-701[UP5];x-x,690-689[BULt];19-21,681-679[UP3]	...(((((((..((((((((((.&.))))))))))--)))))))...	GAUCGAAGAAUUGAAGAGAGGAU&UUCCUUUCUUC--UUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN782_c1_g1_692_TPlot.pdf
TRINITY_DN782_c1_g1:693	si_s86	TRINITY_DN782_c1_g1	680	702	693	-32.90	-22.00	0.668693009118541	10	3-12,700-691;13-19,688-682	1-2,702-701[UP5];x-x,690-689[BULt];20-21,681-680[UP3]	..(((((((..((((((((((..&..))))))))))--)))))))..	AUCGAAGAAUUGAAGAGAGGAUA&UUUCCUUUCUUC--UUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN782_c1_g1_693_TPlot.pdf
TRINITY_DN782_c1_g1:694	si_s85	TRINITY_DN782_c1_g1	681	703	694	-33.80	-22.00	0.650887573964497	9	4-13,700-691;14-20,688-682	1-3,703-701[UP5];x-x,690-689[BULt];21-21,681-681[UP3]	.(((((((..((((((((((...&...))))))))))--))))))).	UCGAAGAAUUGAAGAGAGGAUAC&CUUUCCUUUCUUC--UUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN782_c1_g1_694_TPlot.pdf
TRINITY_DN782_c1_g1:695	si_s84	TRINITY_DN782_c1_g1	682	704	695	-32.30	-22.00	0.681114551083591	10	5-14,700-691;15-21,688-682	1-4,704-701[UP5];x-x,690-689[BULt]	(((((((..((((((((((....&....))))))))))--)))))))	CGAAGAAUUGAAGAGAGGAUACC&UCUUUCCUUUCUUC--UUCUUCG	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN782_c1_g1_695_TPlot.pdf
TRINITY_DN7833_c4_g1:247	si_a755	TRINITY_DN7833_c4_g1	236	260	247	-34.90	-24.20	0.693409742120344	14.5	1-6,260-255;7-17,250-240	x-x,254-251[BULt];18-21,239-236[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	CUCCGAACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN7833_c4_g1_247_TPlot.pdf
TRINITY_DN7833_c4_g1:249	si_a753	TRINITY_DN7833_c4_g1	238	262	249	-33.10	-25.20	0.761329305135952	13.5	2-8,261-255;9-19,250-240	1-1,262-262[UP5];x-x,254-251[BULt];20-21,239-238[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	CCGAACCCAAGGGUCCGGGGUUCAA&AUGAACCU----CCUUUGGGUUUUU	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN7833_c4_g1_249_TPlot.pdf
TRINITY_DN7833_c4_g1:250	si_a752	TRINITY_DN7833_c4_g1	239	263	250	-34.80	-25.20	0.724137931034483	14.5	3-9,261-255;10-20,250-240	1-2,263-262[UP5];x-x,254-251[BULt];21-21,239-239[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	CGAACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN7833_c4_g1_250_TPlot.pdf
TRINITY_DN7833_c5_g1:86	si_a486	TRINITY_DN7833_c5_g1	75	95	86	-24.90	-16.50	0.662650602409639	8.5	1-14,95-82;17-19,79-77	15-16,81-80[SIL];20-21,76-75[UP3]	..(((..((((((((((((((&))))))))))))))..)))..	UUAGCCUCGUGUUCUGUGUAG&UUAUAUAGAAUAUGUCGUUUU	4	0.998156186880325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a486_TRINITY_DN7833_c5_g1_86_TPlot.pdf
TRINITY_DN7836_c0_g1:1222	si_a448	TRINITY_DN7836_c0_g1	1211	1230	1222	-25.50	-16.80	0.658823529411765	9.5	1-5,1230-1226;7-17,1225-1215	6-6,x-x[BULq];18-21,1214-1211[UP3]	....(((((((((((-(((((&))))).)))))))))))....	UUGGAACAGCGAUUG-CUCGU&AUGAGAUAAUUGUUGUUAUAU	2	0.998204808553084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN7836_c0_g1_1222_TPlot.pdf
TRINITY_DN7836_c0_g1:1223	si_a447	TRINITY_DN7836_c0_g1	1212	1231	1223	-25.70	-18.10	0.704280155642023	8.5	1-6,1231-1226;8-18,1225-1215	7-7,x-x[BULq];19-21,1214-1212[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	UGGAACAGCGAUUG-CUCGUA&UAUGAGAUAAUUGUUGUUAUA	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN7836_c0_g1_1223_TPlot.pdf
TRINITY_DN7836_c0_g1:1224	si_a446	TRINITY_DN7836_c0_g1	1213	1232	1224	-25.50	-18.10	0.709803921568627	8	2-7,1231-1226;9-19,1225-1215	1-1,1232-1232[UP5];8-8,x-x[BULq];20-21,1214-1213[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	GGAACAGCGAUUG-CUCGUAG&AUAUGAGAUAAUUGUUGUUAU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN7836_c0_g1_1224_TPlot.pdf
TRINITY_DN7838_c0_g1:1336	si_s25	TRINITY_DN7838_c0_g1	1326	1345	1336	-27.10	-20.20	0.745387453874539	3	1-13,1345-1333;17-21,1330-1326	14-16,1332-1331[AILq]	(((((..-(((((((((((((&)))))))))))))...)))))	AAGAUAU-GUUGCAAUCAAUA&UAUUGAUUGCAACUAAAUCUU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN7838_c0_g1_1336_TPlot.pdf
TRINITY_DN7838_c0_g1:644	si_a705	TRINITY_DN7838_c0_g1	633	653	644	-30.50	-21.60	0.708196721311475	7.5	2-8,652-646;10-18,644-636	1-1,653-653[UP5];9-9,645-645[SIL];19-21,635-633[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	AAGUGUUUUGGAUUGUGCCAA&CUGGUACAUUCCAAAAUAAUC	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN7838_c0_g1_644_TPlot.pdf
TRINITY_DN783_c0_g1:937	si_s619	TRINITY_DN783_c0_g1	923	946	937	-31.70	-22.20	0.700315457413249	12	4-10,943-937;11-21,933-923	1-3,946-944[UP5];x-x,936-934[BULt]	(((((((((((...(((((((...&...)))))))---)))))))))))	CGAAAAGAUCGGUUUUUGGAUGUG&UAAAUCCAAG---CGAUCUUUUCG	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN783_c0_g1_937_TPlot.pdf
TRINITY_DN783_c0_g1:938	si_s618	TRINITY_DN783_c0_g1	924	947	938	-30.30	-19.80	0.653465346534653	14	5-11,943-937;12-21,933-924	1-4,947-944[UP5];x-x,936-934[BULt]	((((((((((...(((((((....&....)))))))---))))))))))	GAAAAGAUCGGUUUUUGGAUGUGG&UUAAAUCCAAG---CGAUCUUUUC	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s618_TRINITY_DN783_c0_g1_938_TPlot.pdf
TRINITY_DN783_c0_g1:950	si_s606	TRINITY_DN783_c0_g1	939	959	950	-28.20	-19.00	0.673758865248227	7	4-15,956-945;17-21,943-939	1-3,959-957[UP5];16-16,944-944[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UGGAUGUGGAAAAGAUUCAUA&AGCGAAUCUUUUUUAAAUCCA	3	0.965977213820763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN783_c0_g1_950_TPlot.pdf
TRINITY_DN783_c0_g1:996	si_a285	TRINITY_DN783_c0_g1	985	1005	996	-28.30	-18.60	0.657243816254417	9	2-6,1004-1000;8-16,998-990	1-1,1005-1005[UP5];7-7,999-999[SIL];17-21,989-985[UP3]	.....(((((((((.(((((.&.))))).))))))))).....	AAGCAAAAUCUAAGGGAUCUG&AAGAUCGCUUGGAUUUAAAAA	2	0.999083304905286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN783_c0_g1_996_TPlot.pdf
TRINITY_DN783_c0_g1:997	si_a284	TRINITY_DN783_c0_g1	986	1006	997	-28.30	-18.60	0.657243816254417	10	3-7,1004-1000;9-17,998-990	1-2,1006-1005[UP5];8-8,999-999[SIL];18-21,989-986[UP3]	....(((((((((.(((((..&..))))).)))))))))....	AGCAAAAUCUAAGGGAUCUGU&AAAGAUCGCUUGGAUUUAAAA	4	0.99999660035318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN783_c0_g1_997_TPlot.pdf
TRINITY_DN7840_c0_g1:1154	si_a455	TRINITY_DN7840_c0_g1	1143	1163	1154	-21.10	-14.00	0.663507109004739	11	4-16,1160-1148	1-3,1163-1161[UP5];17-21,1147-1143[UP3]	.....(((((((((((((...&...))))))))))))).....	UAGAAAUAUAUAACGACAUAU&AAUUGUUGUUAUAUAUAAUAU	2	0.999979666833489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN7840_c0_g1_1154_TPlot.pdf
TRINITY_DN7840_c0_g3:1208	si_a425	TRINITY_DN7840_c0_g3	1194	1217	1208	-30.80	-20.20	0.655844155844156	9	2-8,1216-1210;10-13,1208-1205;14-21,1201-1194	1-1,1217-1217[UP5];9-9,1209-1209[SIL];x-x,1204-1202[BULt]	((((((((...((((.(((((((.&.))))))).))))---))))))))	CCAACGGAAAAUCUUUUGUUUGUG&AAUAAAUAUAGGA---UCCGUUGG	4	0.970690494450295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a425_TRINITY_DN7840_c0_g3_1208_TPlot.pdf
TRINITY_DN7840_c0_g3:1454	si_s68	TRINITY_DN7840_c0_g3	1444	1463	1454	-23.10	-15.80	0.683982683982684	6.5	2-14,1462-1450;17-21,1448-1444	1-1,1463-1463[UP5];15-16,1449-1449[AILq]	(((((.-(((((((((((((.&.)))))))))))))..)))))	AAAGAU-GAAGGUGGAAGUUC&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7840_c0_g3_1454_TPlot.pdf
TRINITY_DN7840_c0_g3:2668	si_s83	TRINITY_DN7840_c0_g3	2653	2679	2668	-30.90	-20.30	0.656957928802589	10.5	1-8,2679-2672;9-15,2669-2663;16-21,2658-2653	x-x,2671-2670[BULt];x-x,2662-2659[BULt]	((((((....(((((((..((((((((&))))))))--)))))))----))))))	GAGGAAUAUUGAAGAAACUGGAGAGGA&UUCUUUCC--UUUCUUC----UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7840_c0_g3_2668_TPlot.pdf
TRINITY_DN7840_c0_g3:3135	si_s90	TRINITY_DN7840_c0_g3	3119	3144	3135	-35.30	-26.00	0.736543909348442	7.5	1-15,3144-3130;16-16,3128-3128;17-21,3123-3119	x-x,3129-3129[BULt];x-x,3127-3124[BULt]	(((((....(.(((((((((((((((&)))))))))))))))-)----)))))	CCGAGAAUCGACGAAGAGGGAGAAAG&CUUUCUUCUUCUUCG-C----UUCGG	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN7840_c0_g3_3135_TPlot.pdf
TRINITY_DN7840_c0_g3:3141	si_s84	TRINITY_DN7840_c0_g3	3130	3156	3141	-32.30	-23.10	0.715170278637771	14	1-5,3156-3152;6-6,3146-3146;7-21,3144-3130	x-x,3151-3147[BULt];x-x,3145-3145[BULt]	(((((((((((((((.(.....(((((&)))))-----)-)))))))))))))))	CGAAGAGGGAGAAAGUGCUGUAGAAGA&UCUUU-----C-CUUUCUUCUUCUUCG	2	0.999988530050541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN7840_c0_g3_3141_TPlot.pdf
TRINITY_DN7840_c0_g3:3145	si_s69	TRINITY_DN7840_c0_g3	3134	3157	3145	-23.40	-15.34	0.655555555555556	14.5	3-9,3155-3149;11-21,3144-3134	1-2,3157-3156[UP5];10-10,3148-3145[AILt]	(((((((((((....(((((((..&..)))))))---.)))))))))))	GAGGGAGAAAGUGCUGUAGAAGAA&AACUUCUAU---UUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7840_c0_g3_3145_TPlot.pdf
TRINITY_DN7840_c0_g3:4002	si_a299	TRINITY_DN7840_c0_g3	3991	4011	4002	-28.30	-20.00	0.706713780918728	13	7-20,4005-3992	1-6,4011-4006[UP5];21-21,3991-3991[UP3]	.((((((((((((((......&......)))))))))))))).	UUUCGAGCGAAUCUUGCAGAG&UUAAAAAAGAUUCGCUUGGAU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN7840_c0_g3_4002_TPlot.pdf
TRINITY_DN7840_c0_g3:5476	si_s523	TRINITY_DN7840_c0_g3	5465	5486	5476	-24.50	-17.00	0.693877551020408	8	1-6,5486-5481;9-21,5477-5465	7-8,5480-5478[AILt]	(((((((((((((...((((((&))))))-..)))))))))))))	CGAAGAUGAUUUCACCGUUAAG&CUUAAU-UCGAAAUCAUUUUUG	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN7840_c0_g3_5476_TPlot.pdf
TRINITY_DN7840_c0_g3:586	si_a399	TRINITY_DN7840_c0_g3	575	595	586	-22.60	-16.00	0.707964601769911	6	1-4,595-592;6-20,590-576	5-5,591-591[SIL];21-21,575-575[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	UUAGAUAAAGCAAUUCAGUAU&AUAUAGAAUUGUUUUGUUUAU	4	0.999817336284418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN7840_c0_g3_586_TPlot.pdf
TRINITY_DN7840_c0_g3:587	si_a398	TRINITY_DN7840_c0_g3	576	596	587	-22.40	-16.20	0.723214285714286	5.5	2-5,595-592;7-21,590-576	1-1,596-596[UP5];6-6,591-591[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	UAGAUAAAGCAAUUCAGUAUG&AAUAUAGAAUUGUUUUGUUUA	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN7840_c0_g3_587_TPlot.pdf
TRINITY_DN7841_c0_g1:1195	si_a313	TRINITY_DN7841_c0_g1	1184	1205	1195	-28.70	-19.40	0.67595818815331	7	1-9,1205-1197;11-15,1194-1190;17-21,1188-1184	10-10,1196-1195[AILt];16-16,1189-1189[SIL]	(((((.(((((..(((((((((&)))))))))-.))))).)))))	GAAAUGGUGGAGAAAAUUCAAG&CUUGGAUUU-AUCCAUGAUUUU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN7841_c0_g1_1195_TPlot.pdf
TRINITY_DN7842_c0_g1:1038	si_a203	TRINITY_DN7842_c0_g1	1027	1048	1038	-26.90	-18.90	0.702602230483271	10.5	1-4,1048-1045;9-21,1039-1027	5-8,1044-1040[AILt]	(((((((((((((.....((((&))))-....)))))))))))))	AAUUGGUCGAUUUUGAAUGUGA&UCAC-UAAUAAAUCGACUAAUU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN7842_c0_g1_1038_TPlot.pdf
TRINITY_DN7842_c0_g1:1039	si_a202	TRINITY_DN7842_c0_g1	1028	1049	1039	-27.00	-18.20	0.674074074074074	11.5	2-5,1048-1045;10-21,1039-1028	1-1,1049-1049[UP5];6-9,1044-1040[AILt]	((((((((((((.....((((.&.))))-....))))))))))))	AUUGGUCGAUUUUGAAUGUGAG&UUCAC-UAAUAAAUCGACUAAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN7842_c0_g1_1039_TPlot.pdf
TRINITY_DN7843_c0_g1:4207	si_a478	TRINITY_DN7843_c0_g1	4196	4216	4207	-21.30	-16.70	0.784037558685446	8.5	4-21,4213-4196	1-3,4216-4214[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUGUUUUGUAUAGCAAUGCCU&AAUUAUUGUUAUAUAGAAUAU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN7843_c0_g1_4207_TPlot.pdf
TRINITY_DN784_c0_g1:1793	si_a144	TRINITY_DN784_c0_g1	1782	1802	1793	-27.40	-17.90	0.653284671532847	9	2-6,1801-1797;8-20,1795-1783	1-1,1802-1802[UP5];7-7,1796-1796[SIL];21-21,1782-1782[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	ACUUGGAACGAUAGAGAUUGC&UUAAUCGUUGUUGUUUUAAGG	3	0.999991195257928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN784_c0_g1_1793_TPlot.pdf
TRINITY_DN784_c0_g1:2107	si_a142	TRINITY_DN784_c0_g1	2096	2116	2107	-23.50	-15.50	0.659574468085106	11.5	4-8,2113-2109;10-20,2107-2097	1-3,2116-2114[UP5];9-9,2108-2108[SIL];21-21,2096-2096[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	AUGGAACGACAGAGAUUGCAA&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999760901	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN784_c0_g1_2107_TPlot.pdf
TRINITY_DN784_c0_g1:2515	si_a145	TRINITY_DN784_c0_g1	2505	2524	2515	-28.10	-19.10	0.679715302491103	6.5	1-5,2524-2520;7-17,2518-2508;19-21,2507-2505	6-6,2519-2519[SIL];18-18,x-x[BULq]	(((-(((((((((((.(((((&))))).))))))))))).)))	ACC-UGGAACGACAGAGAUUG&UAAUCGUUGUUGUUUUAAGGU	3	0.998842450020602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN784_c0_g1_2515_TPlot.pdf
TRINITY_DN784_c0_g1:2518	si_a142	TRINITY_DN784_c0_g1	2507	2527	2518	-23.50	-15.70	0.668085106382979	11.5	4-8,2524-2520;10-20,2518-2508	1-3,2527-2525[UP5];9-9,2519-2519[SIL];21-21,2507-2507[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUGGAACGACAGAGAUUGCAA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999999999798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN784_c0_g1_2518_TPlot.pdf
TRINITY_DN784_c0_g1:2531	si_a873	TRINITY_DN784_c0_g1	2518	2540	2531	-27.00	-17.80	0.659259259259259	13	3-12,2538-2529;13-19,2526-2520	1-2,2540-2539[UP5];x-x,2528-2527[BULt];20-21,2519-2518[UP3]	..(((((((..((((((((((..&..))))))))))--)))))))..	GAGAUUGCAAUGCUGAGUUUUAU&UAAAGAUUUAGU--UGCAAUCAA	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN784_c0_g1_2531_TPlot.pdf
TRINITY_DN7852_c0_g1:508	si_a404	TRINITY_DN7852_c0_g1	497	519	508	-21.70	-14.80	0.682027649769585	13	1-7,519-513;8-18,510-500	x-x,512-511[BULt];19-21,499-497[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	AACAUAUGGGCGAGUCGCAGUUC&GAAUUGU--UUUGUUUAUAUUUA	0	0.473961770113465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN7852_c0_g1_508_TPlot.pdf
TRINITY_DN7852_c0_g1:509	si_a403	TRINITY_DN7852_c0_g1	498	520	509	-22.00	-14.80	0.672727272727273	12.5	2-8,519-513;9-19,510-500	1-1,520-520[UP5];x-x,512-511[BULt];20-21,499-498[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	ACAUAUGGGCGAGUCGCAGUUCG&AGAAUUGU--UUUGUUUAUAUUU	4	0.999999999998234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7852_c0_g1_509_TPlot.pdf
TRINITY_DN7852_c0_g1:513	si_a401	TRINITY_DN7852_c0_g1	500	522	513	-22.60	-14.80	0.654867256637168	14	4-10,519-513;11-21,510-500	1-3,522-520[UP5];x-x,512-511[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	AUAUGGGCGAGUCGCAGUUCGGA&AUAGAAUUGU--UUUGUUUAUAU	2	0.999999953760155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN7852_c0_g1_513_TPlot.pdf
TRINITY_DN7853_c0_g1:916	si_s79	TRINITY_DN7853_c0_g1	905	925	916	-26.20	-17.50	0.66793893129771	7.5	2-9,924-917;11-12,915-914;15-21,911-905	1-1,925-925[UP5];10-10,916-916[SIL];13-14,913-912[SIL]	(((((((..((.((((((((.&.)))))))).))..)))))))	AGGAAGAUUGGUAAGAAGAGC&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN7853_c0_g1_916_TPlot.pdf
TRINITY_DN7854_c0_g1:1906	si_s797	TRINITY_DN7854_c0_g1	1894	1914	1906	-30.00	-20.90	0.696666666666667	11	1-2,1914-1913;4-11,1912-1905;13-20,1902-1895	3-3,x-x[BULq];12-12,1904-1903[AILt];21-21,1894-1894[UP3]	.((((((((..((((((((-((&)).))))))))-.)))))))).	CAACGAAGACGGGAGUGCG-GC&GCUCGUAUUUU-AUCUUCGUUA	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN7854_c0_g1_1906_TPlot.pdf
TRINITY_DN7854_c0_g1:2458	si_s796	TRINITY_DN7854_c0_g1	2447	2467	2458	-30.30	-21.30	0.702970297029703	10	2-7,2466-2461;10-19,2458-2449	1-1,2467-2467[UP5];8-9,2460-2459[SIL];20-21,2448-2447[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	AUCGAAGAUAGAUAGCGAGUC&AGCUCGUAUUUUAUCUUCGUU	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN7854_c0_g1_2458_TPlot.pdf
TRINITY_DN7854_c0_g1:2483	si_s73	TRINITY_DN7854_c0_g1	2472	2493	2483	-24.00	-20.90	0.870833333333333	6	1-3,2493-2491;4-21,2489-2472	x-x,2490-2490[BULt]	((((((((((((((((((.(((&)))-))))))))))))))))))	AAAGGGGAGAGAGAGAAUGAGA&UCU-AUUUUUUUUCUUUCCUUU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7854_c0_g1_2483_TPlot.pdf
TRINITY_DN7855_c0_g1:374	si_s616	TRINITY_DN7855_c0_g1	364	383	374	-28.30	-21.10	0.745583038869258	5	3-14,381-370;16-21,369-364	1-2,383-382[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	GAAGGU-GCUUGGAUUUAAUG&UUUUAAAUCCAAGCGAUCUUU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN7855_c0_g1_374_TPlot.pdf
TRINITY_DN7858_c0_g1:140	si_s807	TRINITY_DN7858_c0_g1	129	150	140	-28.90	-19.30	0.667820069204152	12.5	4-9,147-142;11-20,139-130	1-3,150-148[UP5];10-10,141-140[AILt];21-21,129-129[UP3]	.((((((((((..((((((...&...))))))-.)))))))))).	GGGGGAAAGGUUCACGGAGGAG&UAUCUUCGU-UACCUUUUCUUA	4	0.999999999352834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN7858_c0_g1_140_TPlot.pdf
TRINITY_DN785_c0_g1:1035	si_s188	TRINITY_DN785_c0_g1	1024	1048	1035	-28.20	-19.10	0.677304964539007	12	1-7,1048-1042;8-19,1037-1026	x-x,1041-1038[BULt];20-21,1025-1024[UP3]	..((((((((((((....(((((((&)))))))----))))))))))))..	UGUUCAAAGUAGUCCAACGUUACUC&GAGUAAC----GAUUAUUUUGGAAU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN785_c0_g1_1035_TPlot.pdf
TRINITY_DN785_c0_g1:2108	si_s52	TRINITY_DN785_c0_g1	2097	2117	2108	-31.30	-20.90	0.667731629392971	6	2-4,2116-2114;6-11,2112-2107;13-21,2105-2097	1-1,2117-2117[UP5];5-5,2113-2113[SIL];12-12,2106-2106[SIL]	(((((((((.((((((.(((.&.))).)))))).)))))))))	AGUUGUUGAGUUGAAAACCAC&UUGGAUUUCAAGUUAGCAACU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN785_c0_g1_2108_TPlot.pdf
TRINITY_DN7861_c0_g1:834	si_s73	TRINITY_DN7861_c0_g1	823	844	834	-24.00	-15.70	0.654166666666667	9.5	1-3,844-842;4-4,840-840;6-18,838-826	x-x,841-841[BULt];5-5,839-839[SIL];19-21,825-823[UP3]	...(((((((((((((.(.(((&)))-).)))))))))))))...	UUUGGAGAGAGAGAAAUUCAGA&UCU-AUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7861_c0_g1_834_TPlot.pdf
TRINITY_DN7862_c0_g2:244	si_a788	TRINITY_DN7862_c0_g2	233	261	244	-24.80	-16.40	0.661290322580645	23.5	1-8,261-254;9-19,245-235	x-x,253-246[BULt];20-21,234-233[UP3]	..(((((((((((........((((((((&))))))))--------)))))))))))..	UCGGAAGAUGGAGUUUCUUGGGAAUGGGA&UUCUAUUU--------UUCUAUUUUCCAA	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7862_c0_g2_244_TPlot.pdf
TRINITY_DN7862_c0_g2:245	si_a787	TRINITY_DN7862_c0_g2	234	262	245	-26.30	-18.90	0.718631178707224	22	1-9,262-254;10-20,245-235	x-x,253-246[BULt];21-21,234-234[UP3]	.(((((((((((........(((((((((&)))))))))--------))))))))))).	CGGAAGAUGGAGUUUCUUGGGAAUGGGAG&CUUCUAUUU--------UUCUAUUUUCCA	2	0.998248943405107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7862_c0_g2_245_TPlot.pdf
TRINITY_DN7862_c0_g2:254	si_a786	TRINITY_DN7862_c0_g2	235	263	254	-26.60	-18.50	0.695488721804511	22	2-10,262-254;11-21,245-235	1-1,263-263[UP5];x-x,253-246[BULt]	(((((((((((........(((((((((.&.)))))))))--------)))))))))))	GGAAGAUGGAGUUUCUUGGGAAUGGGAGU&UCUUCUAUUU--------UUCUAUUUUCC	3	0.999999957958114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7862_c0_g2_254_TPlot.pdf
TRINITY_DN7862_c0_g2:420	si_a20	TRINITY_DN7862_c0_g2	398	429	420	-26.70	-17.50	0.655430711610487	25	1-11,429-419;12-20,407-399	x-x,418-408[BULt];21-21,398-398[UP3]	.(((((((((...........(((((((((((&)))))))))))-----------))))))))).	GAGAACUAGAAGCAUUAGCCAAAUAGAUAGGU&GCCUAUUUAUU-----------UUUAGUUCUA	3	0.999999988256462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7862_c0_g2_420_TPlot.pdf
TRINITY_DN7866_c0_g1:13	si_a410	TRINITY_DN7866_c0_g1	2	22	13	-17.80	-12.00	0.674157303370786	8	1-14,22-9	15-21,8-2[UP3]	.......((((((((((((((&)))))))))))))).......	AAAACAGAAAUGUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.99999999999716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7866_c0_g1_13_TPlot.pdf
TRINITY_DN786_c0_g1:404	si_a74	TRINITY_DN786_c0_g1	393	415	404	-22.20	-14.80	0.666666666666667	11	1-9,415-407;10-17,404-397	x-x,406-405[BULt];18-21,396-393[UP3]	....((((((((..(((((((((&)))))))))--))))))))....	UUUAAAUGAAGAAUGCGAUUUGA&UCAAAUUGU--UUUUCAUUAUUA	2	0.999994286989086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN786_c0_g1_404_TPlot.pdf
TRINITY_DN786_c0_g1:408	si_a72	TRINITY_DN786_c0_g1	395	417	408	-21.90	-16.10	0.735159817351598	9	1-11,417-407;12-19,404-397	x-x,406-405[BULt];20-21,396-395[UP3]	..((((((((..(((((((((((&)))))))))))--))))))))..	UAAAUGAAGAAUGCGAUUUGAAG&UUUCAAAUUGU--UUUUCAUUAU	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN786_c0_g1_408_TPlot.pdf
TRINITY_DN786_c0_g1:409	si_a71	TRINITY_DN786_c0_g1	396	418	409	-23.30	-19.20	0.824034334763948	8.5	1-12,418-407;13-20,404-397	x-x,406-405[BULt];21-21,396-396[UP3]	.((((((((..((((((((((((&))))))))))))--)))))))).	AAAUGAAGAAUGCGAUUUGAAGG&CUUUCAAAUUGU--UUUUCAUUA	2	0.489360816480658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN786_c0_g1_409_TPlot.pdf
TRINITY_DN786_c0_g1:410	si_a70	TRINITY_DN786_c0_g1	397	419	410	-23.90	-20.30	0.849372384937239	5	1-13,419-407;14-21,404-397	x-x,406-405[BULt]	((((((((..(((((((((((((&)))))))))))))--))))))))	AAUGAAGAAUGCGAUUUGAAGGA&UCUUUCAAAUUGU--UUUUCAUU	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN786_c0_g1_410_TPlot.pdf
TRINITY_DN786_c1_g1:1072	si_a560	TRINITY_DN786_c1_g1	1061	1081	1072	-36.60	-24.18	0.660655737704918	6.5	1-14,1081-1068;18-19,1064-1063	15-17,1067-1065[SIL];20-21,1062-1061[UP3]	..((...((((((((((((((&))))))))))))))...))..	AAGAGAGAUGGGGAGGUAAAG&CUUUAUCUCCCCGUGAAUCGU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a560_TRINITY_DN786_c1_g1_1072_TPlot.pdf
TRINITY_DN786_c1_g1:1073	si_a559	TRINITY_DN786_c1_g1	1062	1082	1073	-36.80	-25.58	0.695108695652174	5.5	1-15,1082-1068;19-20,1064-1063	16-18,1067-1065[SIL];21-21,1062-1062[UP3]	.((...(((((((((((((((&)))))))))))))))...)).	AGAGAGAUGGGGAGGUAAAGA&UCUUUAUCUCCCCGUGAAUCG	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a559_TRINITY_DN786_c1_g1_1073_TPlot.pdf
TRINITY_DN786_c1_g1:1077	si_a555	TRINITY_DN786_c1_g1	1066	1086	1077	-33.70	-25.00	0.741839762611276	6	1-3,1086-1084;5-19,1082-1068	4-4,1083-1083[SIL];20-21,1067-1066[UP3]	..(((((((((((((((.(((&))).)))))))))))))))..	AGAUGGGGAGGUAAAGAUAUG&UAUUUCUUUAUCUCCCCGUGA	3	0.613823774069816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN786_c1_g1_1077_TPlot.pdf
TRINITY_DN786_c1_g1:1082	si_a550	TRINITY_DN786_c1_g1	1071	1091	1082	-30.90	-25.20	0.815533980582524	6.5	3-8,1089-1084;10-21,1082-1071	1-2,1091-1090[UP5];9-9,1083-1083[SIL]	((((((((((((.((((((..&..)))))).))))))))))))	GGGAGGUAAAGAUAUGGAUAA&CAAUCUAUUUCUUUAUCUCCC	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN786_c1_g1_1082_TPlot.pdf
TRINITY_DN7870_c0_g1:125	si_a658	TRINITY_DN7870_c0_g1	114	135	125	-33.40	-23.60	0.706586826347305	10.5	3-8,133-128;10-18,125-117	1-2,135-134[UP5];9-9,127-126[AILt];19-21,116-114[UP3]	...(((((((((..((((((..&..))))))-.)))))))))...	AUCCAAUGGGCAGAUUCCCGCA&AUCGGGAA-AUGCCUAUUGAUU	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a658_TRINITY_DN7870_c0_g1_125_TPlot.pdf
TRINITY_DN7870_c0_g1:128	si_a656	TRINITY_DN7870_c0_g1	116	137	128	-33.80	-23.60	0.698224852071006	12.5	5-10,133-128;12-20,125-117	1-4,137-134[UP5];11-11,127-126[AILt];21-21,116-116[UP3]	.(((((((((..((((((....&....))))))-.))))))))).	CCAAUGGGCAGAUUCCCGCAGU&AUAUCGGGAA-AUGCCUAUUGA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN7870_c0_g1_128_TPlot.pdf
TRINITY_DN7871_c0_g1:1550	si_s803	TRINITY_DN7871_c0_g1	1539	1559	1550	-26.00	-17.10	0.657692307692308	10.5	4-11,1556-1549;13-20,1547-1540	1-3,1559-1557[UP5];12-12,1548-1548[SIL];21-21,1539-1539[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	CAAAGGUGAAGAAGAUGGCGC&AUUUUAUCUUCGUUACCUUUU	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN7871_c0_g1_1550_TPlot.pdf
TRINITY_DN7871_c0_g1:1805	si_a460	TRINITY_DN7871_c0_g1	1793	1814	1805	-21.60	-14.50	0.671296296296296	9	3-12,1812-1803;13-20,1801-1794	1-2,1814-1813[UP5];x-x,1802-1802[BULt];21-21,1793-1793[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	UUUACAUAUCUGUAUAUGAUGU&UUGUUAUAUAUA-AUAUGUAAU	4	0.999443128657569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN7871_c0_g1_1805_TPlot.pdf
TRINITY_DN7871_c0_g1:727	si_a284	TRINITY_DN7871_c0_g1	715	736	727	-28.30	-20.00	0.706713780918728	11	4-14,733-723;15-18,721-718	1-3,736-734[UP5];x-x,722-722[BULt];19-21,717-715[UP3]	...((((.(((((((((((...&...)))))))))))-))))...	ACAUGGACUCCGAGCGAUCAUG&AAAGAUCGCUUGGA-UUUAAAA	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a284_TRINITY_DN7871_c0_g1_727_TPlot.pdf
TRINITY_DN7871_c0_g1:987	si_s72	TRINITY_DN7871_c0_g1	976	996	987	-24.10	-15.90	0.659751037344398	8.5	2-17,995-980	1-1,996-996[UP5];18-21,979-976[UP3]	....((((((((((((((((.&.))))))))))))))))....	CACAAAGGAGAAGAGAUAGAU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7871_c0_g1_987_TPlot.pdf
TRINITY_DN7871_c0_g1:991	si_s68	TRINITY_DN7871_c0_g1	980	1000	991	-23.10	-15.90	0.688311688311688	11.5	6-21,995-980	1-5,1000-996[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAGAAGAGAUAGAUCUUA&CAACUUCUAUUUUUUUUCUUU	2	0.999999997808611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7871_c0_g1_991_TPlot.pdf
TRINITY_DN7874_c0_g1:253	si_a787	TRINITY_DN7874_c0_g1	235	262	253	-26.30	-17.10	0.650190114068441	12.5	1-10,262-253;11-16,250-245;17-21,239-235	x-x,252-251[BULt];x-x,244-240[BULt]	(((((.....((((((..((((((((((&))))))))))--))))))-----)))))	UGGAAUGAGCGGUGGAAAGAAGUAGAAG&CUUCUAUUUU--UCUAUU-----UUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN7874_c0_g1_253_TPlot.pdf
TRINITY_DN7874_c0_g1:257	si_s67	TRINITY_DN7874_c0_g1	246	266	257	-25.60	-18.50	0.72265625	7	3-19,264-248	1-2,266-265[UP5];20-21,247-246[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GUGGAAAGAAGUAGAAGUUUU&GCAACUUCUAUUUUUUUUCUU	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN7874_c0_g1_257_TPlot.pdf
TRINITY_DN7874_c0_g1:258	si_s66	TRINITY_DN7874_c0_g1	247	267	258	-26.30	-18.50	0.703422053231939	8	4-20,264-248	1-3,267-265[UP5];21-21,247-247[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UGGAAAGAAGUAGAAGUUUUG&AGCAACUUCUAUUUUUUUUCU	2	0.992488623126232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN7874_c0_g1_258_TPlot.pdf
TRINITY_DN7875_c0_g1:2177	si_a326	TRINITY_DN7875_c0_g1	2166	2186	2177	-26.20	-18.30	0.698473282442748	14.5	8-21,2179-2166	1-7,2186-2180[UP5]	((((((((((((((.......&.......))))))))))))))	GACGAGGAAUGAAACCAAGCA&AUGAUUUUUUUAUUCCUUGUC	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN7875_c0_g1_2177_TPlot.pdf
TRINITY_DN7876_c0_g1:730	si_s89	TRINITY_DN7876_c0_g1	715	739	730	-35.30	-23.90	0.677053824362606	7	1-7,739-733;9-15,731-725;16-19,721-718;20-21,716-715	8-8,732-732[SIL];x-x,724-722[BULt];x-x,717-717[BULt]	((.((((...(((((((.(((((((&))))))).)))))))---))))-))	CGAAAGCCGAGAAGAAGCGGAAAGG&CCUUUCUUCUUCUUC---GCUU-CG	0	0.465472384326304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7876_c0_g1_730_TPlot.pdf
TRINITY_DN7876_c0_g1:731	si_s82	TRINITY_DN7876_c0_g1	720	741	731	-28.90	-20.00	0.69204152249135	8.5	1-9,741-733;10-18,731-723	x-x,732-732[BULt];19-21,722-720[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	GCCGAGAAGAAGCGGAAAGGGA&UUUCUUUCC-UUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7876_c0_g1_731_TPlot.pdf
TRINITY_DN7876_c0_g1:732	si_s87	TRINITY_DN7876_c0_g1	718	741	732	-32.90	-23.50	0.714285714285714	7	1-9,741-733;11-17,731-725;18-21,721-718	10-10,732-732[SIL];x-x,724-722[BULt]	((((...(((((((.(((((((((&))))))))).)))))))---))))	AAGCCGAGAAGAAGCGGAAAGGGA&UUCCUUUCUUCUUCUUC---GCUU	4	0.999999988827076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN7876_c0_g1_732_TPlot.pdf
TRINITY_DN7877_c0_g1:1068	si_s2	TRINITY_DN7877_c0_g1	1057	1077	1068	-20.50	-15.90	0.775609756097561	7.5	2-9,1076-1069;11-21,1067-1057	1-1,1077-1077[UP5];10-10,1068-1068[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	GUGAUAGUGGGAGAUAUGAAU&UUUUAUAUUACUUAUUAUUAC	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN7877_c0_g1_1068_TPlot.pdf
TRINITY_DN7877_c0_g1:4320	si_a417	TRINITY_DN7877_c0_g1	4309	4329	4320	-21.40	-15.20	0.710280373831776	4.5	1-4,4329-4326;6-20,4324-4310	5-5,4325-4325[SIL];21-21,4309-4309[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CCUUGUGUUUAUUUAACUAUA&UAUAUUUAAAUAAAUAUAGGA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a417_TRINITY_DN7877_c0_g1_4320_TPlot.pdf
TRINITY_DN7877_c0_g1:4386	si_s439	TRINITY_DN7877_c0_g1	4375	4395	4386	-21.50	-14.00	0.651162790697674	6.5	2-7,4394-4389;9-19,4387-4377	1-1,4395-4395[UP5];8-8,4388-4388[SIL];20-21,4376-4375[UP3]	..(((((((((((.((((((.&.)))))).)))))))))))..	AAUUAUGUAUAAUUUGUAGUA&AAUUACAUAUUAUAUAUAACA	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN7877_c0_g1_4386_TPlot.pdf
TRINITY_DN7877_c0_g1:4388	si_s437	TRINITY_DN7877_c0_g1	4377	4397	4388	-19.70	-14.00	0.710659898477157	8.5	4-9,4394-4389;11-21,4387-4377	1-3,4397-4395[UP5];10-10,4388-4388[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UUAUGUAUAAUUUGUAGUAAA&AUAAUUACAUAUUAUAUAUAA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN7877_c0_g1_4388_TPlot.pdf
TRINITY_DN7877_c0_g1:4389	si_s436	TRINITY_DN7877_c0_g1	4378	4398	4389	-19.60	-13.20	0.673469387755102	10.5	5-10,4394-4389;12-21,4387-4378	1-4,4398-4395[UP5];11-11,4388-4388[SIL]	((((((((((.((((((....&....)))))).))))))))))	UAUGUAUAAUUUGUAGUAAAU&AAUAAUUACAUAUUAUAUAUA	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN7877_c0_g1_4389_TPlot.pdf
TRINITY_DN7879_c0_g1:1907	si_a497	TRINITY_DN7879_c0_g1	1896	1918	1907	-32.00	-22.06	0.689375	11.5	1-5,1918-1914;9-21,1908-1896	6-8,1913-1909[AILt]	(((((((((((((.....(((((&)))))--...)))))))))))))	GAGGAAGACGAAACGGAAGAUAU&AUGUC--GUUUUUCGUCUUCCUU	2	0.999997862791726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7879_c0_g1_1907_TPlot.pdf
TRINITY_DN7879_c0_g1:1908	si_a496	TRINITY_DN7879_c0_g1	1897	1919	1908	-32.40	-22.26	0.687037037037037	11	1-6,1919-1914;10-21,1908-1897	7-9,1913-1909[AILt]	((((((((((((.....((((((&))))))--...))))))))))))	AGGAAGACGAAACGGAAGAUAUA&UAUGUC--GUUUUUCGUCUUCCU	2	0.999893558965426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN7879_c0_g1_1908_TPlot.pdf
TRINITY_DN7879_c0_g1:2948	si_s792	TRINITY_DN7879_c0_g1	2936	2957	2948	-28.50	-19.92	0.698947368421053	10.5	3-11,2955-2947;15-21,2942-2936	1-2,2957-2956[UP5];12-14,2946-2943[AILt]	(((((((....(((((((((..&..)))))))))-...)))))))	GAGAUGGCAAGACGAGCUUGAA&AACAAGCUCGU-AUUUUAUCUU	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s792_TRINITY_DN7879_c0_g1_2948_TPlot.pdf
TRINITY_DN7879_c0_g1:955	si_s69	TRINITY_DN7879_c0_g1	944	964	955	-23.40	-15.40	0.658119658119658	8	3-6,962-959;8-20,957-945	1-2,964-963[UP5];7-7,958-958[SIL];21-21,944-944[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UGAAGAAGAAAAGUUGAAGAU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7879_c0_g1_955_TPlot.pdf
TRINITY_DN7879_c0_g1:956	si_s68	TRINITY_DN7879_c0_g1	945	965	956	-23.10	-16.60	0.718614718614719	6	1-2,965-964;4-7,962-959;9-21,957-945	3-3,963-963[SIL];8-8,958-958[SIL]	(((((((((((((.((((.((&)).)))).)))))))))))))	GAAGAAGAAAAGUUGAAGAUG&CAACUUCUAUUUUUUUUCUUU	2	0.999963954709493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7879_c0_g1_956_TPlot.pdf
TRINITY_DN7879_c0_g1:991	si_s77	TRINITY_DN7879_c0_g1	978	1000	991	-25.50	-20.40	0.8	7	2-12,999-989;13-21,986-978	1-1,1000-1000[UP5];x-x,988-987[BULt]	(((((((((..(((((((((((.&.)))))))))))--)))))))))	GAAGAAAGGCAAAAGAAAGAAGC&UUUUUUUUCUUU--CCUUUCUUC	4	0.999995906285367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN7879_c0_g1_991_TPlot.pdf
TRINITY_DN7879_c1_g1:1027	si_a407	TRINITY_DN7879_c1_g1	1016	1036	1027	-19.80	-14.00	0.707070707070707	10.5	1-14,1036-1023	15-21,1022-1016[UP3]	.......((((((((((((((&)))))))))))))).......	AUGAUUUUGUGGACAGAACAA&UUGUUUUGUUUAUAUUUAAAU	4	0.999999993859753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN7879_c1_g1_1027_TPlot.pdf
TRINITY_DN7879_c1_g1:1029	si_a405	TRINITY_DN7879_c1_g1	1018	1038	1029	-19.80	-14.00	0.707070707070707	11	3-16,1036-1023	1-2,1038-1037[UP5];17-21,1022-1018[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAUUUUGUGGACAGAACAAGG&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999990978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7879_c1_g1_1029_TPlot.pdf
TRINITY_DN7879_c1_g1:860	si_s774	TRINITY_DN7879_c1_g1	849	869	860	-24.70	-16.80	0.680161943319838	9	1-14,869-856	15-21,855-849[UP3]	.......((((((((((((((&)))))))))))))).......	CACCUACAGCAAUAGUGGUUA&UAAUUACUAUUGCUAUAAAAC	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN7879_c1_g1_860_TPlot.pdf
TRINITY_DN7883_c0_g1:2615	si_a498	TRINITY_DN7883_c0_g1	2602	2624	2615	-33.50	-23.10	0.68955223880597	6	2-13,2623-2612;14-17,2610-2607;18-20,2605-2603	1-1,2624-2624[UP5];x-x,2611-2611[BULt];x-x,2606-2606[BULt];21-21,2602-2602[UP3]	.(((.((((.((((((((((((.&.))))))))))))-))))-))).	AAAGUGAAGCACGAGAAACGGCC&UGUCGUUUUUCGU-CUUC-CUUG	4	0.999999781673188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN7883_c0_g1_2615_TPlot.pdf
TRINITY_DN7883_c0_g1:2616	si_a497	TRINITY_DN7883_c0_g1	2603	2625	2616	-32.00	-22.70	0.709375	7	3-14,2623-2612;15-18,2610-2607;19-21,2605-2603	1-2,2625-2624[UP5];x-x,2611-2611[BULt];x-x,2606-2606[BULt]	(((.((((.((((((((((((..&..))))))))))))-))))-)))	AAGUGAAGCACGAGAAACGGCCU&AUGUCGUUUUUCGU-CUUC-CUU	4	0.999997885333129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7883_c0_g1_2616_TPlot.pdf
TRINITY_DN7883_c0_g1:2617	si_a496	TRINITY_DN7883_c0_g1	2604	2626	2617	-32.40	-21.80	0.67283950617284	9	4-15,2623-2612;16-19,2610-2607;20-21,2605-2604	1-3,2626-2624[UP5];x-x,2611-2611[BULt];x-x,2606-2606[BULt]	((.((((.((((((((((((...&...))))))))))))-))))-))	AGUGAAGCACGAGAAACGGCCUU&UAUGUCGUUUUUCGU-CUUC-CU	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN7883_c0_g1_2617_TPlot.pdf
TRINITY_DN7883_c0_g1:2843	si_a758	TRINITY_DN7883_c0_g1	2832	2852	2843	-34.00	-23.40	0.688235294117647	8	1-12,2852-2841;14-14,2839-2839;17-18,2836-2835	13-13,2840-2840[SIL];15-16,2838-2837[SIL];19-21,2834-2832[UP3]	...((..(.((((((((((((&)))))))))))).)..))...	AGUUCUUAUACCCGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.999394377163777	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN7883_c0_g1_2843_TPlot.pdf
TRINITY_DN7883_c0_g1:2844	si_a757	TRINITY_DN7883_c0_g1	2833	2853	2844	-33.10	-23.60	0.712990936555891	8	2-13,2852-2841;15-15,2839-2839;18-19,2836-2835	1-1,2853-2853[UP5];14-14,2840-2840[SIL];16-17,2838-2837[SIL];20-21,2834-2833[UP3]	..((..(.((((((((((((.&.)))))))))))).)..))..	GUUCUUAUACCCGGAGGAGGG&ACCUCCUUUGGGUUUUUGAUU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN7883_c0_g1_2844_TPlot.pdf
TRINITY_DN7883_c0_g1:3045	si_s90	TRINITY_DN7883_c0_g1	3034	3054	3045	-35.30	-25.20	0.713881019830028	4	1-14,3054-3041;16-17,3039-3038;20-21,3035-3034	15-15,3040-3040[SIL];18-19,3037-3036[SIL]	((..((.((((((((((((((&)))))))))))))).))..))	CCUCAGGGAAGGAGAAGAAAG&CUUUCUUCUUCUUCGCUUCGG	3	0.999967176608486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN7883_c0_g1_3045_TPlot.pdf
TRINITY_DN7883_c0_g1:3046	si_s89	TRINITY_DN7883_c0_g1	3035	3055	3046	-35.30	-23.80	0.674220963172805	6	2-15,3054-3041;17-18,3039-3038	1-1,3055-3055[UP5];16-16,3040-3040[SIL];19-21,3037-3035[UP3]	...((.((((((((((((((.&.)))))))))))))).))...	CUCAGGGAAGGAGAAGAAAGA&CCUUUCUUCUUCUUCGCUUCG	3	0.99999999999303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN7883_c0_g1_3046_TPlot.pdf
TRINITY_DN7883_c0_g1:3047	si_s88	TRINITY_DN7883_c0_g1	3036	3056	3047	-34.80	-23.80	0.683908045977012	7	3-16,3054-3041;18-19,3039-3038	1-2,3056-3055[UP5];17-17,3040-3040[SIL];20-21,3037-3036[UP3]	..((.((((((((((((((..&..)))))))))))))).))..	UCAGGGAAGGAGAAGAAAGAG&UCCUUUCUUCUUCUUCGCUUC	2	0.999999482818051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN7883_c0_g1_3047_TPlot.pdf
TRINITY_DN7883_c0_g1:3048	si_s87	TRINITY_DN7883_c0_g1	3037	3057	3048	-32.90	-23.80	0.723404255319149	7.5	4-17,3054-3041;19-20,3039-3038	1-3,3057-3055[UP5];18-18,3040-3040[SIL];21-21,3037-3037[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	CAGGGAAGGAGAAGAAAGAGC&UUCCUUUCUUCUUCUUCGCUU	4	0.999999683426469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN7883_c0_g1_3048_TPlot.pdf
TRINITY_DN7883_c0_g1:3050	si_s85	TRINITY_DN7883_c0_g1	3039	3059	3050	-33.80	-22.60	0.668639053254438	10.5	6-19,3054-3041;21-21,3039-3039	1-5,3059-3055[UP5];20-20,3040-3040[SIL]	(.((((((((((((((.....&.....)))))))))))))).)	GGGAAGGAGAAGAAAGAGCGG&CUUUCCUUUCUUCUUCUUCGC	2	0.999999998935337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN7883_c0_g1_3050_TPlot.pdf
TRINITY_DN7883_c0_g1:3051	si_s70	TRINITY_DN7883_c0_g1	3040	3060	3051	-25.80	-17.30	0.670542635658915	8	2-3,3059-3058;5-6,3056-3055;8-21,3053-3040	1-1,3060-3060[UP5];4-4,3057-3057[SIL];7-7,3054-3054[SIL]	((((((((((((((.((.((.&.)).)).))))))))))))))	GGAAGGAGAAGAAAGAGCGGC&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN7883_c0_g1_3051_TPlot.pdf
TRINITY_DN7883_c0_g1:3052	si_s83	TRINITY_DN7883_c0_g1	3041	3061	3052	-30.90	-20.40	0.660194174757282	13.5	8-21,3054-3041	1-7,3061-3055[UP5]	((((((((((((((.......&.......))))))))))))))	GAAGGAGAAGAAAGAGCGGCC&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7883_c0_g1_3052_TPlot.pdf
TRINITY_DN7883_c0_g1:5879	si_s68	TRINITY_DN7883_c0_g1	5868	5888	5879	-23.10	-15.10	0.653679653679654	10	3-4,5886-5885;6-20,5883-5869	1-2,5888-5887[UP5];5-5,5884-5884[SIL];21-21,5868-5868[UP3]	.(((((((((((((((.((..&..)).))))))))))))))).	CAAGAAGAGAGAUGGGCGUCG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN7883_c0_g1_5879_TPlot.pdf
TRINITY_DN7886_c1_g1:166	si_s492	TRINITY_DN7886_c1_g1	155	175	166	-20.10	-13.20	0.656716417910448	5	1-8,175-168;10-19,166-157	9-9,167-167[SIL];20-21,156-155[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UAUUUUGUUUAUUUUUGAAUA&UAUUUAAAUAUAAACAAAACA	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN7886_c1_g1_166_TPlot.pdf
TRINITY_DN7889_c1_g1:36	si_a20	TRINITY_DN7889_c1_g1	22	45	36	-26.70	-18.34	0.68689138576779	7.5	1-15,45-31;17-20,26-23	16-16,30-27[AILt];21-21,22-22[UP3]	.((((....(((((((((((((((&)))))))))))))))---.)))).	AGGAAAAUAUAAAAGUAAGUAGGC&GCCUAUUUAUUUUUA---GUUCUA	3	0.999823841900373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7889_c1_g1_36_TPlot.pdf
TRINITY_DN788_c0_g1:1183	si_a882	TRINITY_DN788_c0_g1	1172	1192	1183	-27.50	-19.10	0.694545454545455	7.5	2-15,1191-1178	1-1,1192-1192[UP5];16-21,1177-1172[UP3]	......((((((((((((((.&.))))))))))))))......	GUAAAGAUGUUGAUUGCAACC&AGUUGCAAUCAAUAUAGUAAU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a882_TRINITY_DN788_c0_g1_1183_TPlot.pdf
TRINITY_DN788_c0_g1:1184	si_a881	TRINITY_DN788_c0_g1	1173	1193	1184	-27.80	-19.10	0.68705035971223	8.5	3-16,1191-1178	1-2,1193-1192[UP5];17-21,1177-1173[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAAAGAUGUUGAUUGCAACCG&UAGUUGCAAUCAAUAUAGUAA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a881_TRINITY_DN788_c0_g1_1184_TPlot.pdf
TRINITY_DN788_c0_g1:1187	si_a878	TRINITY_DN788_c0_g1	1176	1196	1187	-26.70	-19.10	0.715355805243446	11.5	6-19,1191-1178	1-5,1196-1192[UP5];20-21,1177-1176[UP3]	..((((((((((((((.....&.....))))))))))))))..	AGAUGUUGAUUGCAACCGAUG&AUUUAGUUGCAAUCAAUAUAG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a878_TRINITY_DN788_c0_g1_1187_TPlot.pdf
TRINITY_DN7892_c0_g1:2843	si_a410	TRINITY_DN7892_c0_g1	2832	2852	2843	-17.80	-11.70	0.657303370786517	8	1-14,2852-2839	15-21,2838-2832[UP3]	.......((((((((((((((&)))))))))))))).......	AACUCACAAAUGUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7892_c0_g1_2843_TPlot.pdf
TRINITY_DN7892_c0_g1:2844	si_a409	TRINITY_DN7892_c0_g1	2833	2853	2844	-19.50	-13.00	0.666666666666667	7.5	1-15,2853-2839	16-21,2838-2833[UP3]	......(((((((((((((((&)))))))))))))))......	ACUCACAAAUGUAAACAAAAU&GUUUUGUUUAUAUUUAAAUAA	2	0.999999973589407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7892_c0_g1_2844_TPlot.pdf
TRINITY_DN7892_c0_g2:708	si_a410	TRINITY_DN7892_c0_g2	697	717	708	-17.80	-11.70	0.657303370786517	8	1-14,717-704	15-21,703-697[UP3]	.......((((((((((((((&)))))))))))))).......	AACUCACAAAUGUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	1	0.374150242678095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7892_c0_g2_708_TPlot.pdf
TRINITY_DN7892_c0_g2:713	si_a405	TRINITY_DN7892_c0_g2	702	722	713	-19.80	-13.00	0.656565656565657	10.5	5-19,718-704	1-4,722-719[UP5];20-21,703-702[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACAAAUGUAAACAAAAUUCGU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7892_c0_g2_713_TPlot.pdf
TRINITY_DN7894_c0_g1:5391	si_a352	TRINITY_DN7894_c0_g1	5380	5400	5391	-22.50	-15.00	0.666666666666667	9	3-11,5398-5390;14-21,5387-5380	1-2,5400-5399[UP5];12-13,5389-5388[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	GAUUAAGAGUGGAUUAGUAAA&AAUAUUAAUUCUAUUUUGAUC	3	0.99990402708144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN7894_c0_g1_5391_TPlot.pdf
TRINITY_DN7894_c0_g1:5647	si_a107	TRINITY_DN7894_c0_g1	5636	5656	5647	-30.50	-20.70	0.678688524590164	11	6-20,5651-5637	1-5,5656-5652[UP5];21-21,5636-5636[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CCAAGCUCGUAUUUUGGAGAC&GAAGAUAAAAUACGAGCUUGU	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a107_TRINITY_DN7894_c0_g1_5647_TPlot.pdf
TRINITY_DN7894_c0_g1:5648	si_a106	TRINITY_DN7894_c0_g1	5637	5657	5648	-31.20	-20.40	0.653846153846154	12	7-21,5651-5637	1-6,5657-5652[UP5]	(((((((((((((((......&......)))))))))))))))	CAAGCUCGUAUUUUGGAGACA&CGAAGAUAAAAUACGAGCUUG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a106_TRINITY_DN7894_c0_g1_5648_TPlot.pdf
TRINITY_DN7895_c0_g1:749	si_a403	TRINITY_DN7895_c0_g1	738	758	749	-22.00	-15.50	0.704545454545455	8.5	1-14,758-745	15-21,744-738[UP3]	.......((((((((((((((&)))))))))))))).......	UUCCCGUAGCAAAACGAUUCU&AGAAUUGUUUUGUUUAUAUUU	3	0.999997731878951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7895_c0_g1_749_TPlot.pdf
TRINITY_DN7895_c0_g1:750	si_a402	TRINITY_DN7895_c0_g1	739	759	750	-22.40	-16.60	0.741071428571429	7.5	1-15,759-745	16-21,744-739[UP3]	......(((((((((((((((&)))))))))))))))......	UCCCGUAGCAAAACGAUUCUA&UAGAAUUGUUUUGUUUAUAUU	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN7895_c0_g1_750_TPlot.pdf
TRINITY_DN7895_c0_g1:752	si_a400	TRINITY_DN7895_c0_g1	741	761	752	-22.80	-16.60	0.728070175438597	8.5	3-17,759-745	1-2,761-760[UP5];18-21,744-741[UP3]	....(((((((((((((((..&..)))))))))))))))....	CCGUAGCAAAACGAUUCUACA&UAUAGAAUUGUUUUGUUUAUA	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN7895_c0_g1_752_TPlot.pdf
TRINITY_DN7895_c0_g1:754	si_a398	TRINITY_DN7895_c0_g1	743	763	754	-22.40	-16.60	0.741071428571429	10.5	5-19,759-745	1-4,763-760[UP5];20-21,744-743[UP3]	..(((((((((((((((....&....)))))))))))))))..	GUAGCAAAACGAUUCUACAAA&AAUAUAGAAUUGUUUUGUUUA	3	0.985164363198918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN7895_c0_g1_754_TPlot.pdf
TRINITY_DN7895_c0_g1:756	si_a396	TRINITY_DN7895_c0_g1	745	765	756	-24.70	-16.60	0.672064777327935	12	7-21,759-745	1-6,765-760[UP5]	(((((((((((((((......&......)))))))))))))))	AGCAAAACGAUUCUACAAAAG&AGAAUAUAGAAUUGUUUUGUU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN7895_c0_g1_756_TPlot.pdf
TRINITY_DN7896_c0_g1:1304	si_a455	TRINITY_DN7896_c0_g1	1293	1313	1304	-21.10	-15.60	0.739336492890995	9	1-16,1313-1298	17-21,1297-1293[UP3]	.....((((((((((((((((&)))))))))))))))).....	UACCAGUGUGUAAUAGCAAUU&AAUUGUUGUUAUAUAUAAUAU	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN7896_c0_g1_1304_TPlot.pdf
TRINITY_DN7897_c0_g1:11851	si_s52	TRINITY_DN7897_c0_g1	11840	11860	11851	-31.30	-21.50	0.686900958466454	7	1-12,11860-11849;15-17,11846-11844	13-14,11848-11847[SIL];18-21,11843-11840[UP3]	....(((..((((((((((((&))))))))))))..)))....	UGAAGCUUUCUUGGAAUCCAA&UUGGAUUUCAAGUUAGCAACU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN7897_c0_g1_11851_TPlot.pdf
TRINITY_DN7897_c0_g1:11852	si_s51	TRINITY_DN7897_c0_g1	11841	11861	11852	-30.70	-21.50	0.700325732899023	7	2-13,11860-11849;16-18,11846-11844	1-1,11861-11861[UP5];14-15,11848-11847[SIL];19-21,11843-11841[UP3]	...(((..((((((((((((.&.))))))))))))..)))...	GAAGCUUUCUUGGAAUCCAAA&AUUGGAUUUCAAGUUAGCAAC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN7897_c0_g1_11852_TPlot.pdf
TRINITY_DN7897_c0_g1:11853	si_s50	TRINITY_DN7897_c0_g1	11842	11862	11853	-29.00	-21.50	0.741379310344828	8	3-14,11860-11849;17-19,11846-11844	1-2,11862-11861[UP5];15-16,11848-11847[SIL];20-21,11843-11842[UP3]	..(((..((((((((((((..&..))))))))))))..)))..	AAGCUUUCUUGGAAUCCAAAC&AAUUGGAUUUCAAGUUAGCAA	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN7897_c0_g1_11853_TPlot.pdf
TRINITY_DN7897_c0_g1:11854	si_s49	TRINITY_DN7897_c0_g1	11843	11863	11854	-29.30	-21.50	0.733788395904437	9	4-15,11860-11849;18-20,11846-11844	1-3,11863-11861[UP5];16-17,11848-11847[SIL];21-21,11843-11843[UP3]	.(((..((((((((((((...&...))))))))))))..))).	AGCUUUCUUGGAAUCCAAACA&UAAUUGGAUUUCAAGUUAGCA	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN7897_c0_g1_11854_TPlot.pdf
TRINITY_DN7897_c0_g1:11855	si_s48	TRINITY_DN7897_c0_g1	11844	11864	11855	-28.80	-21.00	0.729166666666667	10	5-16,11860-11849;19-21,11846-11844	1-4,11864-11861[UP5];17-18,11848-11847[SIL]	(((..((((((((((((....&....))))))))))))..)))	GCUUUCUUGGAAUCCAAACAA&AUAAUUGGAUUUCAAGUUAGC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN7897_c0_g1_11855_TPlot.pdf
TRINITY_DN7897_c0_g1:11870	si_a660	TRINITY_DN7897_c0_g1	11852	11879	11870	-36.60	-24.10	0.658469945355191	13.5	1-3,11879-11877;6-15,11874-11865;16-21,11857-11852	4-5,11876-11875[SIL];x-x,11864-11858[BULt]	((((((.......((((((((((..(((&)))..))))))))))-------))))))	GGAAUCCAAACAAGAUGGGCGUUUACCG&CGGGAAAUGCCUAUU-------GAUUCC	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a660_TRINITY_DN7897_c0_g1_11870_TPlot.pdf
TRINITY_DN7897_c0_g1:11921	si_s312	TRINITY_DN7897_c0_g1	11910	11930	11921	-29.00	-21.10	0.727586206896552	6.5	2-8,11929-11923;10-19,11921-11912	1-1,11930-11930[UP5];9-9,11922-11922[SIL];20-21,11911-11910[UP3]	..((((((((((.(((((((.&.))))))).))))))))))..	AUGCAAGAAGGAAAGGAUUUG&AAAAUUCUGUCCUUCUUGUUA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN7897_c0_g1_11921_TPlot.pdf
TRINITY_DN7897_c0_g1:11922	si_s311	TRINITY_DN7897_c0_g1	11911	11931	11922	-30.60	-21.10	0.689542483660131	7.5	3-9,11929-11923;11-20,11921-11912	1-2,11931-11930[UP5];10-10,11922-11922[SIL];21-21,11911-11911[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	UGCAAGAAGGAAAGGAUUUGG&GAAAAUUCUGUCCUUCUUGUU	3	0.994034108910748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN7897_c0_g1_11922_TPlot.pdf
TRINITY_DN7897_c0_g1:11927	si_s69	TRINITY_DN7897_c0_g1	11916	11936	11927	-23.40	-15.50	0.662393162393162	12	4-8,11933-11929;11-21,11926-11916	1-3,11936-11934[UP5];9-10,11928-11927[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	GAAGGAAAGGAUUUGGAACUG&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7897_c0_g1_11927_TPlot.pdf
TRINITY_DN7897_c0_g1:13192	si_s99	TRINITY_DN7897_c0_g1	13181	13201	13192	-34.60	-22.80	0.658959537572254	8	1-5,13201-13197;7-13,13195-13189;15-17,13187-13185	6-6,13196-13196[SIL];14-14,13188-13188[SIL];18-21,13184-13181[UP3]	....(((.(((((((.(((((&))))).))))))).)))....	CGUCCCAUUCCGAGGAGAAGA&UCUUCGCUUCGGAUUGGAAAA	2	0.991702220255531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN7897_c0_g1_13192_TPlot.pdf
TRINITY_DN7897_c0_g1:13193	si_a507	TRINITY_DN7897_c0_g1	13182	13204	13193	-34.90	-23.40	0.670487106017192	10	1-6,13204-13199;7-17,13196-13186	x-x,13198-13197[BULt];18-21,13185-13182[UP3]	....(((((((((((..((((((&))))))--)))))))))))....	GUCCCAUUCCGAGGAGAAGAUGA&UCGUCU--UCCUUGGAAUGUAAG	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN7897_c0_g1_13193_TPlot.pdf
TRINITY_DN7897_c0_g1:13194	si_a506	TRINITY_DN7897_c0_g1	13183	13205	13194	-33.40	-24.30	0.727544910179641	9	1-7,13205-13199;8-18,13196-13186	x-x,13198-13197[BULt];19-21,13185-13183[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	UCCCAUUCCGAGGAGAAGAUGAA&UUCGUCU--UCCUUGGAAUGUAA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN7897_c0_g1_13194_TPlot.pdf
TRINITY_DN7897_c0_g1:13195	si_a505	TRINITY_DN7897_c0_g1	13184	13206	13195	-33.30	-25.20	0.756756756756757	7.5	1-8,13206-13199;9-19,13196-13186	x-x,13198-13197[BULt];20-21,13185-13184[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	CCCAUUCCGAGGAGAAGAUGAAA&UUUCGUCU--UCCUUGGAAUGUA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN7897_c0_g1_13195_TPlot.pdf
TRINITY_DN7897_c0_g1:13196	si_a504	TRINITY_DN7897_c0_g1	13185	13207	13196	-32.90	-25.90	0.787234042553192	6.5	1-9,13207-13199;10-20,13196-13186	x-x,13198-13197[BULt];21-21,13185-13185[UP3]	.(((((((((((..(((((((((&)))))))))--))))))))))).	CCAUUCCGAGGAGAAGAUGAAAA&UUUUCGUCU--UCCUUGGAAUGU	3	0.444047250220125	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN7897_c0_g1_13196_TPlot.pdf
TRINITY_DN7897_c0_g1:13200	si_a502	TRINITY_DN7897_c0_g1	13187	13209	13200	-32.10	-23.00	0.716510903426791	8.5	3-11,13207-13199;12-21,13196-13187	1-2,13209-13208[UP5];x-x,13198-13197[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	AUUCCGAGGAGAAGAUGAAAACG&GUUUUUCGUCU--UCCUUGGAAU	2	0.992105207356984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN7897_c0_g1_13200_TPlot.pdf
TRINITY_DN7897_c0_g1:13201	si_a501	TRINITY_DN7897_c0_g1	13188	13209	13201	-33.50	-23.60	0.704477611940299	7.5	1-6,13209-13204;8-12,13203-13199;13-21,13196-13188	7-7,x-x[BULq];x-x,13198-13197[BULt]	(((((((((..(((((-((((((&)))))).)))))--)))))))))	UUCCGAGGAGAAGAUG-AAAACG&CGUUUUUCGUCU--UCCUUGGAA	2	0.993921036177452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN7897_c0_g1_13201_TPlot.pdf
TRINITY_DN7897_c0_g1:13202	si_a500	TRINITY_DN7897_c0_g1	13189	13210	13202	-34.40	-24.40	0.709302325581395	5.5	1-7,13210-13204;9-13,13203-13199;14-21,13196-13189	8-8,x-x[BULq];x-x,13198-13197[BULt]	((((((((..(((((-(((((((&))))))).)))))--))))))))	UCCGAGGAGAAGAUG-AAAACGA&UCGUUUUUCGUCU--UCCUUGGA	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN7897_c0_g1_13202_TPlot.pdf
TRINITY_DN7897_c0_g1:2173	si_a328	TRINITY_DN7897_c0_g1	2162	2182	2173	-30.10	-20.70	0.687707641196013	16	8-21,2175-2162	1-7,2182-2176[UP5]	((((((((((((((.......&.......))))))))))))))	GGGAUAGGGGAUGACGAUGGC&GAUUUUUUUAUUCCUUGUCCC	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN7897_c0_g1_2173_TPlot.pdf
TRINITY_DN7897_c0_g1:2610	si_s70	TRINITY_DN7897_c0_g1	2599	2619	2610	-25.80	-17.90	0.693798449612403	9.5	4-6,2616-2614;8-21,2612-2599	1-3,2619-2617[UP5];7-7,2613-2613[SIL]	((((((((((((((.(((...&...))).))))))))))))))	GGAGAGAAAGAAAGGAGACAA&ACUUCUAUUUUUUUUCUUUCC	3	0.99999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN7897_c0_g1_2610_TPlot.pdf
TRINITY_DN7897_c0_g1:2662	si_a501	TRINITY_DN7897_c0_g1	2650	2672	2662	-33.50	-22.10	0.659701492537313	8.5	1-8,2672-2665;10-12,2662-2660;13-20,2658-2651	9-9,2664-2663[AILt];x-x,2659-2659[BULt];21-21,2650-2650[UP3]	.((((((((.(((..((((((((&))))))))-.)))-)))))))).	CUCUAAGGACAGAAAGAAAGACG&CGUUUUUC-GUCU-UCCUUGGAA	3	0.999999999989552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN7897_c0_g1_2662_TPlot.pdf
TRINITY_DN7897_c0_g1:2663	si_a500	TRINITY_DN7897_c0_g1	2651	2673	2663	-34.40	-23.20	0.674418604651163	6.5	1-9,2673-2665;11-13,2662-2660;14-21,2658-2651	10-10,2664-2663[AILt];x-x,2659-2659[BULt]	((((((((.(((..(((((((((&)))))))))-.)))-))))))))	UCUAAGGACAGAAAGAAAGACGA&UCGUUUUUC-GUCU-UCCUUGGA	2	0.999897460025328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN7897_c0_g1_2663_TPlot.pdf
TRINITY_DN7897_c0_g1:2667	si_a497	TRINITY_DN7897_c0_g1	2654	2676	2667	-32.00	-21.10	0.659375	8	3-12,2674-2665;14-16,2662-2660;17-21,2658-2654	1-2,2676-2675[UP5];13-13,2664-2663[AILt];x-x,2659-2659[BULt]	(((((.(((..((((((((((..&..))))))))))-.)))-)))))	AAGGACAGAAAGAAAGACGACGA&AUGUCGUUUUUC-GUCU-UCCUU	2	0.999999999991903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7897_c0_g1_2667_TPlot.pdf
TRINITY_DN7897_c0_g1:5066	si_s62	TRINITY_DN7897_c0_g1	5055	5075	5066	-26.50	-19.60	0.739622641509434	8.5	1-4,5075-5072;7-20,5069-5056	5-6,5071-5070[SIL];21-21,5055-5055[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	UGGAAGUAGAAGUUGAAGGCU&AGUUAGCAACUUCUAUUUUUU	3	0.870571926237697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN7897_c0_g1_5066_TPlot.pdf
TRINITY_DN7897_c0_g1:5376	si_s899	TRINITY_DN7897_c0_g1	5365	5385	5376	-28.30	-19.90	0.703180212014134	7.5	1-11,5385-5375;13-17,5373-5369	12-12,5374-5374[SIL];18-21,5368-5365[UP3]	....(((((.(((((((((((&))))))))))).)))))....	AGCAGAAAUCGAAGAGAAGGU&GCUUUCUCUUCAAUUUCAAUU	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN7897_c0_g1_5376_TPlot.pdf
TRINITY_DN7897_c0_g1:5377	si_s898	TRINITY_DN7897_c0_g1	5366	5386	5377	-30.70	-20.20	0.657980456026059	7	2-12,5385-5375;14-18,5373-5369	1-1,5386-5386[UP5];13-13,5374-5374[SIL];19-21,5368-5366[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	GCAGAAAUCGAAGAGAAGGUG&GGCUUUCUCUUCAAUUUCAAU	3	0.999999991505649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN7897_c0_g1_5377_TPlot.pdf
TRINITY_DN7897_c0_g1:5389	si_s805	TRINITY_DN7897_c0_g1	5377	5400	5389	-28.60	-18.80	0.657342657342657	11.5	1-8,5400-5393;9-12,5390-5387;13-21,5385-5377	x-x,5392-5391[BULt];x-x,5386-5386[BULt]	(((((((((.((((..((((((((&))))))))--))))-)))))))))	AGAGAAGGUGGAUGUCGAGGUAGA&UUUAUCUU--CGUU-ACCUUUUCU	2	0.999999942864456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN7897_c0_g1_5389_TPlot.pdf
TRINITY_DN7897_c0_g1:5390	si_s804	TRINITY_DN7897_c0_g1	5378	5401	5390	-27.90	-18.40	0.659498207885305	10	1-9,5401-5393;10-13,5390-5387;14-21,5385-5378	x-x,5392-5391[BULt];x-x,5386-5386[BULt]	((((((((.((((..(((((((((&)))))))))--))))-))))))))	GAGAAGGUGGAUGUCGAGGUAGAA&UUUUAUCUU--CGUU-ACCUUUUC	2	0.999999893543778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN7897_c0_g1_5390_TPlot.pdf
TRINITY_DN7897_c0_g1:5394	si_a786	TRINITY_DN7897_c0_g1	5379	5403	5394	-26.60	-18.90	0.710526315789474	13.5	1-11,5403-5393;12-20,5388-5380	x-x,5392-5389[BULt];21-21,5379-5379[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AGAAGGUGGAUGUCGAGGUAGAAGA&UCUUCUAUUUU----UCUAUUUUCC	4	0.999994064120275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN7897_c0_g1_5394_TPlot.pdf
TRINITY_DN7897_c0_g1:5395	si_a785	TRINITY_DN7897_c0_g1	5380	5404	5395	-25.90	-19.10	0.737451737451738	13.5	2-12,5403-5393;13-21,5388-5380	1-1,5404-5404[UP5];x-x,5392-5389[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	GAAGGUGGAUGUCGAGGUAGAAGAA&CUCUUCUAUUUU----UCUAUUUUC	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN7897_c0_g1_5395_TPlot.pdf
TRINITY_DN7897_c0_g1:5400	si_a544	TRINITY_DN7897_c0_g1	5389	5408	5400	-28.90	-18.90	0.653979238754325	9	1-7,5408-5402;10-17,5400-5393	8-9,5401-5401[AILq];18-21,5392-5389[UP3]	....((((((((.-(((((((&)))))))..))))))))....	UGUCGAGGUAGAA-GAACCGA&UCGGUUCAAUCUAUUUCUUUA	3	0.999898017866465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN7897_c0_g1_5400_TPlot.pdf
TRINITY_DN7897_c0_g1:5401	si_a543	TRINITY_DN7897_c0_g1	5390	5409	5401	-28.70	-18.90	0.658536585365854	9	2-8,5408-5402;11-18,5400-5393	1-1,5409-5409[UP5];9-10,5401-5401[AILq];19-21,5392-5390[UP3]	...((((((((.-(((((((.&.)))))))..))))))))...	GUCGAGGUAGAA-GAACCGAA&AUCGGUUCAAUCUAUUUCUUU	2	0.988673538665862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN7897_c0_g1_5401_TPlot.pdf
TRINITY_DN7897_c0_g1:5994	si_s484	TRINITY_DN7897_c0_g1	5983	6003	5994	-20.50	-13.50	0.658536585365854	10	1-13,6003-5991	14-21,5990-5983[UP3]	........(((((((((((((&)))))))))))))........	UGAGACAGAAGUAGAUAUAGG&CCUAUAUUUAUUUAAAUAUAA	4	0.999964237477797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s484_TRINITY_DN7897_c0_g1_5994_TPlot.pdf
TRINITY_DN7897_c0_g1:6416	si_a68	TRINITY_DN7897_c0_g1	6405	6427	6416	-25.40	-17.20	0.677165354330709	8.5	1-4,6427-6424;5-19,6421-6407	x-x,6423-6422[BULt];20-21,6406-6405[UP3]	..(((((((((((((((..((((&))))--)))))))))))))))..	CUGAAGGCAAUUUGAGAAUGAAG&CUUC--UUUCAAAUUGUUUUUCA	4	0.999999999236631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7897_c0_g1_6416_TPlot.pdf
TRINITY_DN7897_c0_g1:9904	si_s797	TRINITY_DN7897_c0_g1	9892	9913	9904	-30.00	-19.90	0.663333333333333	9.5	1-9,9913-9905;12-15,9902-9899;16-20,9897-9893	10-11,9904-9903[SIL];x-x,9898-9898[BULt];21-21,9892-9892[UP3]	.(((((.((((..(((((((((&)))))))))..))))-))))).	AGGCGGUAGAUUUGAUAUGAGC&GCUCGUAUUUUAUCU-UCGUUA	3	0.999999914612344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN7897_c0_g1_9904_TPlot.pdf
TRINITY_DN7898_c0_g1:3597	si_a896	TRINITY_DN7898_c0_g1	3586	3606	3597	-21.60	-15.60	0.722222222222222	7.5	1-11,3606-3596;13-18,3594-3589	12-12,3595-3595[SIL];19-21,3588-3586[UP3]	...((((((.(((((((((((&))))))))))).))))))...	CUUUAUUGCAUAUUGUUGCUA&UAGUAAUAAUAAGUAAUAUAA	0	0.0295717614730515	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN7898_c0_g1_3597_TPlot.pdf
TRINITY_DN7898_c0_g1:3598	si_a895	TRINITY_DN7898_c0_g1	3587	3607	3598	-21.70	-15.60	0.71889400921659	6.5	2-12,3606-3596;14-19,3594-3589	1-1,3607-3607[UP5];13-13,3595-3595[SIL];20-21,3588-3587[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	UUUAUUGCAUAUUGUUGCUAA&AUAGUAAUAAUAAGUAAUAUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN7898_c0_g1_3598_TPlot.pdf
TRINITY_DN7899_c0_g1:1609	si_a788	TRINITY_DN7899_c0_g1	1598	1618	1609	-24.80	-18.00	0.725806451612903	11.5	6-21,1613-1598	1-5,1618-1614[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUGGAAGAUGGAAGAACUUUG&UUCUAUUUUUCUAUUUUCCAA	4	0.999879119837535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN7899_c0_g1_1609_TPlot.pdf
TRINITY_DN789_c0_g1:1135	si_a317	TRINITY_DN789_c0_g1	1124	1144	1135	-24.30	-16.20	0.666666666666667	5	1-16,1144-1129;18-21,1127-1124	17-17,1128-1128[SIL]	((((.((((((((((((((((&)))))))))))))))).))))	UGGGUAAAUUGUGGAUAAAUU&GAUUUAUCCAUGAUUUUUUUA	4	0.999999993192147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN789_c0_g1_1135_TPlot.pdf
TRINITY_DN789_c1_g1:11	si_a530	TRINITY_DN789_c1_g1	1	21	11	-43.70	-29.70	0.679633867276888	5.5	1-4,21-18;5-15,16-6;17-21,5-1	x-x,17-17[BULt];16-16,x-x[BULq]	(((((-(((((((((((.((((&))))-))))))))))).)))))	GGACC-AUCGCUUGCGUCGUUC&GGAC-ACGCGAGCGAUCGGUUC	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a530_TRINITY_DN789_c1_g1_11_TPlot.pdf
TRINITY_DN78_c8_g1:148	si_s896	TRINITY_DN78_c8_g1	136	157	148	-31.60	-22.50	0.712025316455696	6	1-12,157-146;13-19,144-138	x-x,145-145[BULt];20-21,137-136[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	AAGAGUUGAGAGAGAAAGUCUA&UAGGCUUUCUCU-UCAAUUUCA	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN78_c8_g1_148_TPlot.pdf
TRINITY_DN78_c8_g1:876	si_s79	TRINITY_DN78_c8_g1	863	885	876	-26.20	-17.90	0.683206106870229	13	4-12,882-874;13-20,871-864	1-3,885-883[UP5];x-x,873-872[BULt];21-21,863-863[UP3]	.((((((((..(((((((((...&...)))))))))--)))))))).	CAGAGGGAAAUGGAGAGAGAUCG&UUUUUUCUUUCC--UUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN78_c8_g1_876_TPlot.pdf
TRINITY_DN78_c8_g1:878	si_s77	TRINITY_DN78_c8_g1	865	887	878	-25.50	-16.70	0.654901960784314	14	6-14,882-874;15-21,871-865	1-5,887-883[UP5];x-x,873-872[BULt]	(((((((..(((((((((.....&.....)))))))))--)))))))	GAGGGAAAUGGAGAGAGAUCGCC&UUUUUUUUCUUUCC--UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN78_c8_g1_878_TPlot.pdf
TRINITY_DN7901_c0_g1:3484	si_a142	TRINITY_DN7901_c0_g1	3473	3493	3484	-23.50	-18.10	0.770212765957447	10	4-18,3490-3476	1-3,3493-3491[UP5];19-21,3475-3473[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCCAAACAACGACGAUUGCUG&AAUUAAUCGUUGUUGUUUUAA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN7901_c0_g1_3484_TPlot.pdf
TRINITY_DN7901_c0_g1:3564	si_s464	TRINITY_DN7901_c0_g1	3552	3573	3564	-33.80	-23.20	0.686390532544379	7	2-11,3572-3563;12-17,3561-3556;19-21,3554-3552	1-1,3573-3573[UP5];x-x,3562-3562[BULt];18-18,3555-3555[SIL]	(((.((((((.((((((((((.&.))))))))))-)))))).)))	GGUGUGUUGGUGUAUGAGAUGC&UUAUCUCAUAU-CCAACGGAUC	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s464_TRINITY_DN7901_c0_g1_3564_TPlot.pdf
TRINITY_DN7902_c0_g1:317	si_a68	TRINITY_DN7902_c0_g1	306	326	317	-25.40	-16.68	0.656692913385827	9	1-4,326-323;8-20,319-307	5-7,322-320[SIL];21-21,306-306[UP3]	.(((((((((((((...((((&))))...))))))))))))).	CGAGAGAUGAUUUGUGUGAAG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN7902_c0_g1_317_TPlot.pdf
TRINITY_DN7902_c0_g1:359	si_s92	TRINITY_DN7902_c0_g1	349	368	359	-34.90	-23.10	0.66189111747851	6.5	1-12,368-357;14-18,356-352	13-13,x-x[BULq];19-21,351-349[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	CCGCGGAG-GAAGAGGGAGAA&UUCUUCUUCUUCGCUUCGGAU	4	0.999999999999934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN7902_c0_g1_359_TPlot.pdf
TRINITY_DN7902_c0_g1:4455	si_a783	TRINITY_DN7902_c0_g1	4444	4464	4455	-24.70	-16.08	0.651012145748988	8.5	1-12,4464-4453;16-20,4449-4445	13-15,4452-4450[SIL];21-21,4444-4444[UP3]	.(((((...((((((((((((&))))))))))))...))))).	UAAUGGUUUGGUAGGAGGGUU&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN7902_c0_g1_4455_TPlot.pdf
TRINITY_DN7904_c0_g1:1216	si_a627	TRINITY_DN7904_c0_g1	1205	1225	1216	-29.50	-20.30	0.688135593220339	10.5	1-15,1225-1211	16-21,1210-1205[UP3]	......(((((((((((((((&)))))))))))))))......	AAUUAUUUGACAUGGUGCGUC&GGCGUAUUAUGUCGAUUUUUU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN7904_c0_g1_1216_TPlot.pdf
TRINITY_DN7904_c0_g1:1279	si_a186	TRINITY_DN7904_c0_g1	1268	1288	1279	-31.50	-24.70	0.784126984126984	7.5	3-5,1286-1284;7-21,1282-1268	1-2,1288-1287[UP5];6-6,1283-1283[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GUGGACAGGGGGAGACAUUUG&AUAAUAUCUUUCCCUGUUCAC	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN7904_c0_g1_1279_TPlot.pdf
TRINITY_DN7904_c0_g1:1281	si_a184	TRINITY_DN7904_c0_g1	1270	1291	1281	-31.70	-23.80	0.750788643533123	10	2-6,1290-1286;9-21,1282-1270	1-1,1291-1291[UP5];7-8,1285-1283[AILt]	(((((((((((((...(((((.&.)))))-..)))))))))))))	GGACAGGGGGAGACAUUUGUCA&AGAUAA-UAUCUUUCCCUGUUC	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN7904_c0_g1_1281_TPlot.pdf
TRINITY_DN7904_c0_g1:956	si_a89	TRINITY_DN7904_c0_g1	945	965	956	-26.40	-17.30	0.65530303030303	8	2-15,964-951	1-1,965-965[UP5];16-21,950-945[UP3]	......((((((((((((((.&.))))))))))))))......	UACAGAACCUUUUCUUGAUAG&UUAUUAAGAAAAGGUAACGAA	2	0.71902994493905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a89_TRINITY_DN7904_c0_g1_956_TPlot.pdf
TRINITY_DN7906_c0_g1:2439	si_a9	TRINITY_DN7906_c0_g1	2427	2449	2439	-29.60	-19.50	0.658783783783784	8.5	1-7,2449-2443;8-10,2441-2439;12-19,2436-2429	x-x,2442-2442[BULt];11-11,2438-2437[AILt];20-21,2428-2427[UP3]	..((((((((..(((.(((((((&)))))))-)))-.))))))))..	UAGAAUAGGCCCUUCUUCUUCAA&UUGAAGA-GAA-AGCCUAUUUAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN7906_c0_g1_2439_TPlot.pdf
TRINITY_DN790_c0_g1:1121	si_a784	TRINITY_DN790_c0_g1	1110	1130	1121	-24.70	-20.00	0.809716599190283	5.5	2-11,1129-1120;14-21,1117-1110	1-1,1130-1130[UP5];12-13,1119-1118[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AAGAUAGACCGAUAGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN790_c0_g1_1121_TPlot.pdf
TRINITY_DN790_c0_g1:1124	si_a781	TRINITY_DN790_c0_g1	1113	1133	1124	-27.40	-18.60	0.678832116788321	5	1-3,1133-1131;5-14,1129-1120;17-21,1117-1113	4-4,1130-1130[SIL];15-16,1119-1118[SIL]	(((((..((((((((((.(((&))).))))))))))..)))))	AUAGACCGAUAGAAGAGAUGG&UCAACUCUUCUAUUUUUCUAU	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN790_c0_g1_1124_TPlot.pdf
TRINITY_DN7910_c0_g2:2667	si_a546	TRINITY_DN7910_c0_g2	2656	2676	2667	-28.60	-19.70	0.688811188811189	5.5	2-11,2675-2666;13-19,2664-2658	1-1,2676-2676[UP5];12-12,2665-2665[SIL];20-21,2657-2656[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	AUUAGAGAACUAGAUUGAACA&GGUUCAAUCUAUUUCUUUAUC	4	0.983556572849094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN7910_c0_g2_2667_TPlot.pdf
TRINITY_DN7910_c0_g2:757	si_a471	TRINITY_DN7910_c0_g2	746	766	757	-21.10	-13.80	0.654028436018957	5.5	2-14,765-753;16-19,751-748	1-1,766-766[UP5];15-15,752-752[SIL];20-21,747-746[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	AAAUGAAAAUAAUUACAUGUG&AAUAUGUAAUUAUUGUUAUAU	2	0.999990243530631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN7910_c0_g2_757_TPlot.pdf
TRINITY_DN7911_c1_g1:1357	si_a406	TRINITY_DN7911_c1_g1	1346	1366	1357	-19.80	-13.60	0.686868686868687	11.5	1-14,1366-1353	15-21,1352-1346[UP3]	.......((((((((((((((&)))))))))))))).......	AAUGUCAGUGGACGAAGCAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999998748355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN7911_c1_g1_1357_TPlot.pdf
TRINITY_DN7911_c1_g1:1358	si_a405	TRINITY_DN7911_c1_g1	1347	1367	1358	-19.80	-14.80	0.747474747474748	10	1-15,1367-1353	16-21,1352-1347[UP3]	......(((((((((((((((&)))))))))))))))......	AUGUCAGUGGACGAAGCAAUU&AAUUGUUUUGUUUAUAUUUAA	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN7911_c1_g1_1358_TPlot.pdf
TRINITY_DN7911_c1_g1:1360	si_a403	TRINITY_DN7911_c1_g1	1349	1369	1360	-22.00	-15.10	0.686363636363636	10.5	3-17,1367-1353	1-2,1369-1368[UP5];18-21,1352-1349[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUCAGUGGACGAAGCAAUUAA&AGAAUUGUUUUGUUUAUAUUU	2	0.999986847153988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN7911_c1_g1_1360_TPlot.pdf
TRINITY_DN7911_c1_g1:1361	si_a402	TRINITY_DN7911_c1_g1	1350	1370	1361	-22.40	-15.10	0.674107142857143	11.5	4-18,1367-1353	1-3,1370-1368[UP5];19-21,1352-1350[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCAGUGGACGAAGCAAUUAAA&UAGAAUUGUUUUGUUUAUAUU	2	0.999994631677662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN7911_c1_g1_1361_TPlot.pdf
TRINITY_DN7911_c1_g1:1362	si_a401	TRINITY_DN7911_c1_g1	1351	1371	1362	-22.60	-15.10	0.668141592920354	12	5-19,1367-1353	1-4,1371-1368[UP5];20-21,1352-1351[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAGUGGACGAAGCAAUUAAAG&AUAGAAUUGUUUUGUUUAUAU	2	0.999996612785375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN7911_c1_g1_1362_TPlot.pdf
TRINITY_DN7911_c1_g1:1363	si_a400	TRINITY_DN7911_c1_g1	1352	1372	1363	-22.80	-15.10	0.662280701754386	13	6-20,1367-1353	1-5,1372-1368[UP5];21-21,1352-1352[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGUGGACGAAGCAAUUAAAGG&UAUAGAAUUGUUUUGUUUAUA	2	0.999995601000782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN7911_c1_g1_1363_TPlot.pdf
TRINITY_DN7911_c1_g1:1429	si_s696	TRINITY_DN7911_c1_g1	1418	1438	1429	-26.30	-17.70	0.673003802281369	6	1-18,1438-1421;20-20,1419-1419	19-19,1420-1420[SIL];21-21,1418-1418[UP3]	.(.((((((((((((((((((&)))))))))))))))))).).	AAGUGAUAGAUUGAUUGAUUA&UAAUUAGUCGAUUUAUUAGUG	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s696_TRINITY_DN7911_c1_g1_1429_TPlot.pdf
TRINITY_DN7911_c1_g1:1430	si_s695	TRINITY_DN7911_c1_g1	1419	1439	1430	-24.70	-17.50	0.708502024291498	6	2-19,1438-1421;21-21,1419-1419	1-1,1439-1439[UP5];20-20,1420-1420[SIL]	(.((((((((((((((((((.&.)))))))))))))))))).)	AGUGAUAGAUUGAUUGAUUAU&UUAAUUAGUCGAUUUAUUAGU	2	0.772610690604571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN7911_c1_g1_1430_TPlot.pdf
TRINITY_DN7911_c1_g1:1431	si_s694	TRINITY_DN7911_c1_g1	1420	1440	1431	-23.90	-16.90	0.707112970711297	8	3-20,1438-1421	1-2,1440-1439[UP5];21-21,1420-1420[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	GUGAUAGAUUGAUUGAUUAUA&UUUAAUUAGUCGAUUUAUUAG	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN7911_c1_g1_1431_TPlot.pdf
TRINITY_DN7911_c1_g1:1432	si_s693	TRINITY_DN7911_c1_g1	1421	1441	1432	-23.90	-16.70	0.698744769874477	8.5	4-21,1438-1421	1-3,1441-1439[UP5]	((((((((((((((((((...&...))))))))))))))))))	UGAUAGAUUGAUUGAUUAUAG&GUUUAAUUAGUCGAUUUAUUA	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN7911_c1_g1_1432_TPlot.pdf
TRINITY_DN7911_c1_g1:1436	si_a232	TRINITY_DN7911_c1_g1	1426	1445	1436	-28.20	-18.70	0.663120567375887	6.5	4-15,1442-1431;17-21,1430-1426	1-3,1445-1443[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	GAUUG-AUUGAUUAUAGAUAU&GUUUCUAUAAUCAAUUCGAUC	2	0.799221546344049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN7911_c1_g1_1436_TPlot.pdf
TRINITY_DN7911_c1_g1:342	si_a791	TRINITY_DN7911_c1_g1	330	351	342	-26.50	-23.00	0.867924528301887	6.5	1-14,351-338;15-21,336-330	x-x,337-337[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GGGUUGGCAAGAUGGAGGGAUA&UAUUUUUCUAUUUU-CCAAUCC	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN7911_c1_g1_342_TPlot.pdf
TRINITY_DN7911_c1_g1:698	si_s308	TRINITY_DN7911_c1_g1	687	707	698	-32.80	-21.36	0.651219512195122	10	1-8,707-700;13-21,695-687	9-12,699-696[SIL]	(((((((((....((((((((&))))))))....)))))))))	GGGGAGGAUUCAUUUUUCGCA&UGCGAAAAUUCUGUCCUUCUU	3	0.999484928090324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN7911_c1_g1_698_TPlot.pdf
TRINITY_DN7911_c1_g1:699	si_s307	TRINITY_DN7911_c1_g1	688	708	699	-32.90	-21.76	0.661398176291793	8.5	1-9,708-700;14-21,695-688	10-13,699-696[SIL]	((((((((....(((((((((&)))))))))....))))))))	GGGAGGAUUCAUUUUUCGCAA&UUGCGAAAAUUCUGUCCUUCU	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN7911_c1_g1_699_TPlot.pdf
TRINITY_DN7911_c1_g1:783	si_s505	TRINITY_DN7911_c1_g1	772	792	783	-24.70	-17.70	0.716599190283401	6.5	1-3,792-790;6-16,787-777;18-21,775-772	4-5,789-788[SIL];17-17,776-776[SIL]	((((.(((((((((((..(((&)))..))))))))))).))))	GAGGUUAUGGAAUUGUCGUGU&ACAAAACAAUUCUAUAUUCUU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s505_TRINITY_DN7911_c1_g1_783_TPlot.pdf
TRINITY_DN7911_c1_g1:784	si_s504	TRINITY_DN7911_c1_g1	773	793	784	-24.70	-16.60	0.672064777327935	7	2-4,792-790;7-17,787-777;19-21,775-773	1-1,793-793[UP5];5-6,789-788[SIL];18-18,776-776[SIL]	(((.(((((((((((..(((.&.)))..))))))))))).)))	AGGUUAUGGAAUUGUCGUGUA&AACAAAACAAUUCUAUAUUCU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s504_TRINITY_DN7911_c1_g1_784_TPlot.pdf
TRINITY_DN7911_c1_g1:843	si_s665	TRINITY_DN7911_c1_g1	832	852	843	-33.60	-22.48	0.669047619047619	6	1-10,852-843;12-13,841-840;17-20,836-833	11-11,842-842[SIL];14-16,839-837[SIL];21-21,832-832[UP3]	.((((...((.((((((((((&)))))))))).))...)))).	ACUAUUUCCAUUUCGAUCCCC&GGGGAUCGAAUUGAUUAUAGA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s665_TRINITY_DN7911_c1_g1_843_TPlot.pdf
TRINITY_DN7912_c0_g1:1359	si_a76	TRINITY_DN7912_c0_g1	1348	1368	1359	-21.20	-14.00	0.660377358490566	11.5	3-16,1366-1353	1-2,1368-1367[UP5];17-21,1352-1348[UP3]	.....((((((((((((((..&..)))))))))))))).....	AAAUUUGAUGGAAAGCAGUAU&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999990558	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN7912_c0_g1_1359_TPlot.pdf
TRINITY_DN7912_c0_g1:1360	si_a75	TRINITY_DN7912_c0_g1	1349	1369	1360	-21.30	-14.00	0.657276995305164	12.5	4-17,1366-1353	1-3,1369-1367[UP5];18-21,1352-1349[UP3]	....((((((((((((((...&...))))))))))))))....	AAUUUGAUGGAAAGCAGUAUC&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999999983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN7912_c0_g1_1360_TPlot.pdf
TRINITY_DN7912_c0_g1:1444	si_a351	TRINITY_DN7912_c0_g1	1433	1453	1444	-20.50	-14.90	0.726829268292683	8	2-10,1452-1444;12-19,1442-1435	1-1,1453-1453[UP5];11-11,1443-1443[SIL];20-21,1434-1433[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	AACAAAGUGGUGUUGAUAUUG&AAAUAUUAAUUCUAUUUUGAU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN7912_c0_g1_1444_TPlot.pdf
TRINITY_DN7912_c0_g1:1661	si_a657	TRINITY_DN7912_c0_g1	1650	1671	1661	-33.80	-22.70	0.671597633136095	9	1-7,1671-1665;9-19,1662-1652	8-8,1664-1663[AILt];20-21,1651-1650[UP3]	..(((((((((((..(((((((&)))))))-.)))))))))))..	CACAAUAGGUAUUGACCUGGUA&UAUCGGG-AAAUGCCUAUUGAU	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN7912_c0_g1_1661_TPlot.pdf
TRINITY_DN7912_c0_g1:1662	si_a656	TRINITY_DN7912_c0_g1	1651	1672	1662	-33.80	-22.70	0.671597633136095	8.5	2-8,1671-1665;10-20,1662-1652	1-1,1672-1672[UP5];9-9,1664-1663[AILt];21-21,1651-1651[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	ACAAUAGGUAUUGACCUGGUAG&AUAUCGGG-AAAUGCCUAUUGA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a656_TRINITY_DN7912_c0_g1_1662_TPlot.pdf
TRINITY_DN7912_c0_g1:2830	si_s76	TRINITY_DN7912_c0_g1	2818	2839	2830	-23.60	-16.50	0.699152542372881	11.5	5-15,2835-2825;16-21,2823-2818	1-4,2839-2836[UP5];x-x,2824-2824[BULt]	((((((.(((((((((((....&....)))))))))))-))))))	AGGAAAUGGAAGGGAAGAUUAC&AUUUUUUUUCUUUCC-UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN7912_c0_g1_2830_TPlot.pdf
TRINITY_DN7912_c0_g1:2831	si_s75	TRINITY_DN7912_c0_g1	2819	2840	2831	-24.00	-15.70	0.654166666666667	13.5	6-16,2835-2825;17-21,2823-2819	1-5,2840-2836[UP5];x-x,2824-2824[BULt]	(((((.(((((((((((.....&.....)))))))))))-)))))	GGAAAUGGAAGGGAAGAUUACU&UAUUUUUUUUCUUUCC-UUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN7912_c0_g1_2831_TPlot.pdf
TRINITY_DN7912_c0_g1:787	si_a363	TRINITY_DN7912_c0_g1	775	796	787	-26.40	-18.30	0.693181818181818	7	2-11,795-786;13-21,783-775	1-1,796-796[UP5];12-12,785-784[AILt]	(((((((((..((((((((((.&.))))))))))-.)))))))))	AUUUUUGAUAACGAUCAAGGUC&UAUUUUGAUCG-GAUCAAAAAU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN7912_c0_g1_787_TPlot.pdf
TRINITY_DN7921_c1_g1:1448	si_a311	TRINITY_DN7921_c1_g1	1437	1457	1448	-32.70	-21.80	0.666666666666667	8	1-14,1457-1444;17-18,1441-1440	15-16,1443-1442[SIL];19-21,1439-1437[UP3]	...((..((((((((((((((&))))))))))))))..))...	GUGCAAAGAUGGAUCCAGGCG&CGCUUGGAUUUAUCCAUGAUU	2	0.968177548830565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN7921_c1_g1_1448_TPlot.pdf
TRINITY_DN792_c0_g1:2158	si_s82	TRINITY_DN792_c0_g1	2147	2167	2158	-28.90	-19.50	0.674740484429066	6	1-7,2167-2161;10-21,2158-2147	8-9,2160-2159[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	AAGAAGAAGAAGAAGAAGAAA&UUUCUUUCCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN792_c0_g1_2158_TPlot.pdf
TRINITY_DN792_c0_g1:2159	si_s90	TRINITY_DN792_c0_g1	2147	2168	2159	-35.30	-24.00	0.679886685552408	4	1-14,2168-2155;16-19,2152-2149	15-15,2154-2153[AILt];20-21,2148-2147[UP3]	..((((..((((((((((((((&))))))))))))))-.))))..	AAGAAGAAGAAGAAGAAGAAAG&CUUUCUUCUUCUUC-GCUUCGG	4	0.999999999930368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN792_c0_g1_2159_TPlot.pdf
TRINITY_DN792_c0_g1:2161	si_s88	TRINITY_DN792_c0_g1	2149	2170	2161	-34.80	-23.80	0.683908045977012	5	3-16,2168-2155;18-21,2152-2149	1-2,2170-2169[UP5];17-17,2154-2153[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	GAAGAAGAAGAAGAAGAAAGCA&UCCUUUCUUCUUCUUC-GCUUC	3	0.999999999978779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN792_c0_g1_2161_TPlot.pdf
TRINITY_DN792_c0_g1:304	si_a403	TRINITY_DN792_c0_g1	289	313	304	-22.00	-14.50	0.659090909090909	13	3-10,311-304;11-21,299-289	1-2,313-312[UP5];x-x,303-300[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	GAAUAUAGACACUCCGAACAAUUAA&AGAAUUGUUU----UGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN792_c0_g1_304_TPlot.pdf
TRINITY_DN7930_c0_g1:856	si_a470	TRINITY_DN7930_c0_g1	845	865	856	-21.30	-14.00	0.657276995305164	12	6-20,860-846	1-5,865-861[UP5];21-21,845-845[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAUGACGAUAAUUAUAAAAGU&UAAUAUGUAAUUAUUGUUAUA	3	0.99999954173757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN7930_c0_g1_856_TPlot.pdf
TRINITY_DN7930_c0_g1:952	si_s69	TRINITY_DN7930_c0_g1	938	961	952	-23.40	-16.70	0.713675213675214	7	1-8,961-954;10-15,952-947;16-21,943-938	9-9,953-953[SIL];x-x,946-944[BULt]	((((((...((((((.((((((((&)))))))).))))))---))))))	GAGAGAUUUGAAAAAUUAGGAGUU&AACUUCUAUUUUUUU---UCUUUC	2	0.99999999495485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7930_c0_g1_952_TPlot.pdf
TRINITY_DN7934_c0_g1:1849	si_a468	TRINITY_DN7934_c0_g1	1838	1858	1849	-21.30	-14.50	0.68075117370892	8.5	5-21,1854-1838	1-4,1858-1855[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAAUAAUAAUUAUAUAUACAU&UAUAAUAUGUAAUUAUUGUUA	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN7934_c0_g1_1849_TPlot.pdf
TRINITY_DN7934_c0_g2:639	si_a412	TRINITY_DN7934_c0_g2	628	648	639	-18.30	-14.70	0.80327868852459	8.5	1-16,648-633	17-21,632-628[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAAGUUUAGAUGUAAGCAA&UUGUUUAUAUUUAAAUAAAUA	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN7934_c0_g2_639_TPlot.pdf
TRINITY_DN7934_c0_g2:641	si_a410	TRINITY_DN7934_c0_g2	630	650	641	-17.80	-14.80	0.831460674157303	9	3-18,648-633	1-2,650-649[UP5];19-21,632-630[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAGUUUAGAUGUAAGCAACA&UUUUGUUUAUAUUUAAAUAAA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN7934_c0_g2_641_TPlot.pdf
TRINITY_DN7934_c0_g2:642	si_a409	TRINITY_DN7934_c0_g2	631	651	642	-19.50	-14.80	0.758974358974359	10	4-19,648-633	1-3,651-649[UP5];20-21,632-631[UP3]	..((((((((((((((((...&...))))))))))))))))..	AAGUUUAGAUGUAAGCAACAA&GUUUUGUUUAUAUUUAAAUAA	0	0.12109339128425	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN7934_c0_g2_642_TPlot.pdf
TRINITY_DN7934_c0_g2:644	si_a407	TRINITY_DN7934_c0_g2	633	651	644	-19.80	-14.90	0.752525252525252	6.5	1-4,651-648;7-21,647-633	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	GUUUAGAUGUAAGCA--ACAA&UUGUUUUGUUUAUAUUUAAAU	2	0.988673538665862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN7934_c0_g2_644_TPlot.pdf
TRINITY_DN7935_c0_g1:585	si_a326	TRINITY_DN7935_c0_g1	572	594	585	-26.20	-18.40	0.702290076335878	10	2-12,593-583;13-20,580-573	1-1,594-594[UP5];x-x,582-581[BULt];21-21,572-572[UP3]	.((((((((..(((((((((((.&.)))))))))))--)))))))).	CACGAGGAGAUUGAGAAGAUCAA&AUGAUUUUUUUA--UUCCUUGUC	2	0.995762828526261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN7935_c0_g1_585_TPlot.pdf
TRINITY_DN7935_c0_g1:706	si_a499	TRINITY_DN7935_c0_g1	693	715	706	-35.20	-23.00	0.653409090909091	8.5	1-3,715-713;5-5,711-711;7-13,709-703;14-21,700-693	4-4,712-712[SIL];6-6,710-710[SIL];x-x,702-701[BULt]	((((((((..(((((((.(.(((&))).).)))))))--))))))))	CCAGGGAAUUGAUGAGACAGGAC&GUCGUUUUUCGUC--UUCCUUGG	2	0.999999991384079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN7935_c0_g1_706_TPlot.pdf
TRINITY_DN7937_c1_g2:612	si_a755	TRINITY_DN7937_c1_g2	601	625	612	-34.90	-23.80	0.681948424068768	15	1-6,625-620;7-17,615-605	x-x,619-616[BULt];18-21,604-601[UP3]	....(((((((((((....((((((&))))))----)))))))))))....	UUCCGGACCCAAGGGUCCGGGGUUC&GAACCU----CCUUUGGGUUUUUGA	4	0.998038395321089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN7937_c1_g2_612_TPlot.pdf
TRINITY_DN7937_c1_g2:613	si_a754	TRINITY_DN7937_c1_g2	602	626	613	-34.60	-24.80	0.716763005780347	14	1-7,626-620;8-18,615-605	x-x,619-616[BULt];19-21,604-602[UP3]	...(((((((((((....(((((((&)))))))----)))))))))))...	UCCGGACCCAAGGGUCCGGGGUUCA&UGAACCU----CCUUUGGGUUUUUG	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN7937_c1_g2_613_TPlot.pdf
TRINITY_DN7937_c1_g2:615	si_a752	TRINITY_DN7937_c1_g2	604	628	615	-34.80	-24.80	0.71264367816092	15	3-9,626-620;10-20,615-605	1-2,628-627[UP5];x-x,619-616[BULt];21-21,604-604[UP3]	.(((((((((((....(((((((..&..)))))))----))))))))))).	CGGACCCAAGGGUCCGGGGUUCAAA&CAUGAACCU----CCUUUGGGUUUU	2	0.677805392147854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN7937_c1_g2_615_TPlot.pdf
TRINITY_DN7938_c0_g1:1936	si_a332	TRINITY_DN7938_c0_g1	1925	1945	1936	-30.60	-20.20	0.660130718954248	18.5	8-18,1938-1928	1-7,1945-1939[UP5];19-21,1927-1925[UP3]	...(((((((((((.......&.......)))))))))))...	AGCCGGGGCGAGGGCGCCGGC&UUUUUAUUCCUUGUCCCGAAA	4	0.999993418734587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN7938_c0_g1_1936_TPlot.pdf
TRINITY_DN7938_c0_g1:1938	si_a330	TRINITY_DN7938_c0_g1	1927	1947	1938	-30.50	-20.20	0.662295081967213	20	10-20,1938-1928	1-9,1947-1939[UP5];21-21,1927-1927[UP3]	.(((((((((((.........&.........))))))))))).	CCGGGGCGAGGGCGCCGGCCC&UUUUUUUAUUCCUUGUCCCGA	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN7938_c0_g1_1938_TPlot.pdf
TRINITY_DN7938_c0_g1:1958	si_s648	TRINITY_DN7938_c0_g1	1945	1968	1958	-43.50	-29.88	0.686896551724138	9	1-3,1968-1966;4-7,1964-1961;9-13,1959-1955;16-21,1950-1945	x-x,1965-1965[BULt];8-8,1960-1960[SIL];14-15,1954-1951[AILt]	((((((....(((((.((((.(((&)))-)))).)))))--..))))))	CCCCCGCUAGUGUAUGGGGGCGCA&UGC-CCUCGAUACA--AUCGGGGG	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s648_TRINITY_DN7938_c0_g1_1958_TPlot.pdf
TRINITY_DN7939_c0_g1:254	si_s8	TRINITY_DN7939_c0_g1	243	265	254	-21.30	-14.50	0.68075117370892	9	1-7,265-259;8-12,256-252;15-21,249-243	x-x,258-257[BULt];13-14,251-250[SIL]	(((((((..(((((..(((((((&)))))))--)))))..)))))))	GAUGUAGGUAUAAUUCGAGUAGU&AUUACUU--AUUAUUACUAUAUU	4	0.999965683861244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN7939_c0_g1_254_TPlot.pdf
TRINITY_DN793_c0_g1:1437	si_s33	TRINITY_DN793_c0_g1	1426	1445	1437	-24.10	-16.70	0.692946058091286	6	1-3,1445-1443;5-15,1442-1432;17-20,1430-1427	4-4,x-x[BULq];16-16,1431-1431[SIL];21-21,1426-1426[UP3]	.((((.(((((((((((-(((&))).))))))))))).)))).	CGUUAAUGAAGAUUUGG-UGC&GCAACUAAAUCUUUAAUAAUU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN793_c0_g1_1437_TPlot.pdf
TRINITY_DN793_c0_g1:1438	si_s32	TRINITY_DN793_c0_g1	1427	1446	1438	-24.80	-17.70	0.713709677419355	5	1-4,1446-1443;6-16,1442-1432;18-21,1430-1427	5-5,x-x[BULq];17-17,1431-1431[SIL]	((((.(((((((((((-((((&)))).))))))))))).))))	GUUAAUGAAGAUUUGG-UGCA&UGCAACUAAAUCUUUAAUAAU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN793_c0_g1_1438_TPlot.pdf
TRINITY_DN793_c0_g1:2270	si_a788	TRINITY_DN793_c0_g1	2255	2279	2270	-24.80	-18.30	0.737903225806452	8.5	2-14,2278-2266;15-19,2261-2257	1-1,2279-2279[UP5];x-x,2265-2262[BULt];20-21,2256-2255[UP3]	..(((((....(((((((((((((.&.)))))))))))))----)))))..	ACGGAAAUUAUGUAGAAAAGUAGAU&UUCUAUUUUUCUAU----UUUCCAA	3	0.998995390752579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN793_c0_g1_2270_TPlot.pdf
TRINITY_DN793_c0_g1:2272	si_a786	TRINITY_DN793_c0_g1	2257	2281	2272	-26.60	-17.90	0.672932330827068	10.5	4-16,2278-2266;17-21,2261-2257	1-3,2281-2279[UP5];x-x,2265-2262[BULt]	(((((....(((((((((((((...&...)))))))))))))----)))))	GGAAAUUAUGUAGAAAAGUAGAUUA&UCUUCUAUUUUUCUAU----UUUCC	2	0.999999922010038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN793_c0_g1_2272_TPlot.pdf
TRINITY_DN7943_c0_g1:724	si_a191	TRINITY_DN7943_c0_g1	715	733	724	-32.00	-21.70	0.678125	4.5	1-11,733-723;15-21,721-715	12-14,722-722[AILq]	(((((((.--(((((((((((&)))))))))))...)))))))	UGUUAGUU--CAGGGAAAGAU&AUCUUUCCCUGUUCACUAAUA	4	0.989980740253264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN7943_c0_g1_724_TPlot.pdf
TRINITY_DN7945_c0_g1:1674	si_s72	TRINITY_DN7945_c0_g1	1659	1683	1674	-24.10	-15.90	0.659751037344398	10.5	2-13,1682-1671;14-20,1666-1660	1-1,1683-1683[UP5];x-x,1670-1667[BULt];21-21,1659-1659[UP3]	.(((((((....((((((((((((.&.))))))))))))----))))))).	CAGGGAAGUAAAAGAAAAGGUGGAC&UUCUAUUUUUUUU----CUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN7945_c0_g1_1674_TPlot.pdf
TRINITY_DN7945_c0_g1:748	si_a501	TRINITY_DN7945_c0_g1	737	759	748	-33.50	-22.30	0.665671641791045	9.5	1-7,759-753;9-19,749-739	8-8,752-750[AILt];20-21,738-737[UP3]	..(((((((((((...(((((((&)))))))--.)))))))))))..	AACCGAGGAAGAUAAAAAAAACG&CGUUUUU--CGUCUUCCUUGGAA	4	0.999999999820032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN7945_c0_g1_748_TPlot.pdf
TRINITY_DN7945_c0_g1:753	si_s795	TRINITY_DN7945_c0_g1	742	764	753	-30.30	-19.80	0.653465346534653	10	3-8,762-757;10-19,753-744;21-21,742-742	1-2,764-763[UP5];9-9,756-754[AILt];20-20,743-743[SIL]	(.((((((((((...((((((..&..))))))--.)))))))))).)	AGGAAGAUAAAAAAAACGAGCAG&AAGCUCGU--AUUUUAUCUUCGU	4	0.999999054607137	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN7945_c0_g1_753_TPlot.pdf
TRINITY_DN7946_c0_g1:1677	si_a665	TRINITY_DN7946_c0_g1	1666	1687	1677	-29.60	-19.50	0.658783783783784	7	1-5,1687-1683;7-21,1680-1666	6-6,1682-1681[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	AAUGGGGAAUCAGUAUCGUAUU&AAUGC-CUAUUGAUUCCUUAUU	2	0.998908813410223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN7946_c0_g1_1677_TPlot.pdf
TRINITY_DN7946_c0_g1:1678	si_a664	TRINITY_DN7946_c0_g1	1667	1688	1678	-29.60	-20.00	0.675675675675676	7	1-6,1688-1683;8-21,1680-1667	7-7,1682-1681[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	AUGGGGAAUCAGUAUCGUAUUU&AAAUGC-CUAUUGAUUCCUUAU	2	0.986004634636695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a664_TRINITY_DN7946_c0_g1_1678_TPlot.pdf
TRINITY_DN7946_c0_g1:229	si_s95	TRINITY_DN7946_c0_g1	218	238	229	-36.30	-24.20	0.666666666666667	5.5	1-8,238-231;10-19,229-220	9-9,230-230[SIL];20-21,219-218[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UAAAUCUGAAGCUGAGAAGAA&UUCUUCUUCGCUUCGGAUUGG	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN7946_c0_g1_229_TPlot.pdf
TRINITY_DN7946_c0_g1:231	si_s93	TRINITY_DN7946_c0_g1	220	240	231	-34.80	-24.00	0.689655172413793	6.5	3-10,238-231;12-21,229-220	1-2,240-239[UP5];11-11,230-230[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AAUCUGAAGCUGAGAAGAAUA&UCUUCUUCUUCGCUUCGGAUU	2	0.999780913243855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN7946_c0_g1_231_TPlot.pdf
TRINITY_DN7946_c0_g1:498	si_s99	TRINITY_DN7946_c0_g1	487	508	498	-34.60	-23.10	0.667630057803468	10.5	1-7,508-502;9-18,499-490	8-8,501-500[AILt];19-21,489-487[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	UCGUUCAAUCCGGUUGCGGGGA&UCUUCGC-UUCGGAUUGGAAAA	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN7946_c0_g1_498_TPlot.pdf
TRINITY_DN7948_c0_g1:1975	si_s84	TRINITY_DN7948_c0_g1	1964	1986	1975	-32.30	-22.30	0.690402476780186	9	1-8,1986-1979;9-14,1976-1971;16-20,1969-1965	x-x,1978-1977[BULt];15-15,1970-1970[SIL];21-21,1964-1964[UP3]	.(((((.((((((..((((((((&))))))))--)))))).))))).	AGAAGAUGAGGAGUCAGGGAAGA&UCUUUCCU--UUCUUCUUCUUCG	4	0.999999999999866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN7948_c0_g1_1975_TPlot.pdf
TRINITY_DN7948_c0_g1:1976	si_s83	TRINITY_DN7948_c0_g1	1965	1987	1976	-30.90	-22.10	0.715210355987055	8.5	2-9,1986-1979;10-15,1976-1971;17-21,1969-1965	1-1,1987-1987[UP5];x-x,1978-1977[BULt];16-16,1970-1970[SIL]	(((((.((((((..((((((((.&.))))))))--)))))).)))))	GAAGAUGAGGAGUCAGGGAAGAU&UUCUUUCCU--UUCUUCUUCUUC	2	0.999999919042966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN7948_c0_g1_1976_TPlot.pdf
TRINITY_DN7948_c0_g1:1979	si_s82	TRINITY_DN7948_c0_g1	1966	1988	1979	-28.90	-18.90	0.653979238754325	10.5	3-10,1986-1979;11-16,1976-1971;18-21,1969-1966	1-2,1988-1987[UP5];x-x,1978-1977[BULt];17-17,1970-1970[SIL]	((((.((((((..((((((((..&..))))))))--)))))).))))	AAGAUGAGGAGUCAGGGAAGAUC&UUUCUUUCCU--UUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN7948_c0_g1_1979_TPlot.pdf
TRINITY_DN7948_c0_g1:1981	si_a316	TRINITY_DN7948_c0_g1	1970	1989	1981	-26.30	-17.80	0.67680608365019	8	1-6,1989-1984;8-10,1983-1981;12-20,1979-1971	7-7,x-x[BULq];11-11,1980-1980[SIL];21-21,1970-1970[UP3]	.(((((((((.(((-((((((&)))))).))).))))))))).	UGAGGAGUCAGGGA-AGAUCC&GGAUUUAUCCAUGAUUUUUUU	2	0.999482891835849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN7948_c0_g1_1981_TPlot.pdf
TRINITY_DN7948_c0_g1:1982	si_a315	TRINITY_DN7948_c0_g1	1971	1990	1982	-27.00	-18.60	0.688888888888889	7	1-7,1990-1984;9-11,1983-1981;13-21,1979-1971	8-8,x-x[BULq];12-12,1980-1980[SIL]	(((((((((.(((-(((((((&))))))).))).)))))))))	GAGGAGUCAGGGA-AGAUCCA&UGGAUUUAUCCAUGAUUUUUU	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN7948_c0_g1_1982_TPlot.pdf
TRINITY_DN7948_c0_g1:1984	si_a323	TRINITY_DN7948_c0_g1	1971	1994	1984	-26.80	-19.10	0.712686567164179	8	1-6,1994-1989;7-14,1987-1980;15-21,1977-1971	x-x,1988-1988[BULt];x-x,1979-1978[BULt]	(((((((..((((((((.((((((&))))))-))))))))--)))))))	GAGGAGUCAGGGAAGAUCCAUGGA&UCCAUG-AUUUUUUU--AUUCCUU	2	0.957630300367885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN7948_c0_g1_1984_TPlot.pdf
TRINITY_DN7948_c0_g1:2141	si_a497	TRINITY_DN7948_c0_g1	2130	2150	2141	-32.00	-20.90	0.653125	11.5	3-6,2148-2145;9-19,2142-2132	1-2,2150-2149[UP5];7-8,2144-2143[SIL];20-21,2131-2130[UP3]	..(((((((((((..((((..&..))))..)))))))))))..	UCGGAAGAUGAGAUCCGAUCA&AUGUCGUUUUUCGUCUUCCUU	2	0.999999999999686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN7948_c0_g1_2141_TPlot.pdf
TRINITY_DN794_c0_g1:2494	si_s540	TRINITY_DN794_c0_g1	2484	2503	2494	-29.10	-19.90	0.683848797250859	6	1-8,2503-2496;10-13,2494-2491;16-20,2489-2485	9-9,2495-2495[SIL];14-15,2490-2490[AILq];21-21,2484-2484[UP3]	.(((((.-((((.((((((((&)))))))).))))..))))).	GUCUAUA-UGAUGGGAUCAGA&UUUGAUCCGAUCAAAAUAGAA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s540_TRINITY_DN794_c0_g1_2494_TPlot.pdf
TRINITY_DN794_c0_g1:2692	si_a318	TRINITY_DN794_c0_g1	2681	2701	2692	-22.50	-16.50	0.733333333333333	5.5	2-6,2700-2696;8-21,2694-2681	1-1,2701-2701[UP5];7-7,2695-2695[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	AUAAAAAGAUCAUGAGUAGAA&AUUUAUCCAUGAUUUUUUUAU	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN794_c0_g1_2692_TPlot.pdf
TRINITY_DN7951_c0_g1:487	si_s521	TRINITY_DN7951_c0_g1	476	494	487	-23.90	-17.50	0.732217573221757	6.5	1-5,494-490;8-21,489-476	6-7,x-x[BULq]	((((((((((((((--(((((&)))))..))))))))))))))	GAGGUGAUUUCGAA--AAGGA&UUCUUAAUUCGAAAUCAUUUU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s521_TRINITY_DN7951_c0_g1_487_TPlot.pdf
TRINITY_DN7954_c0_g1:3069	si_a899	TRINITY_DN7954_c0_g1	3059	3078	3069	-18.70	-12.30	0.657754010695187	3	1-12,3078-3067;14-20,3066-3060	13-13,x-x[BULq];21-21,3059-3059[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	AUUUUAUA-UAUUUAUUAUUA&UAAUAAUAAGUAAUAUAAAAA	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN7954_c0_g1_3069_TPlot.pdf
TRINITY_DN7958_c0_g1:469	si_a790	TRINITY_DN7958_c0_g1	457	478	469	-25.80	-17.10	0.662790697674419	10	4-10,475-469;11-21,467-457	1-3,478-476[UP5];x-x,468-468[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GGUUGGGAAAUCAGAAGAGGUA&CUAUUUUUCU-AUUUUCCAAUC	3	0.999999858358662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN7958_c0_g1_469_TPlot.pdf
TRINITY_DN7958_c0_g1:911	si_a415	TRINITY_DN7958_c0_g1	900	920	911	-18.10	-12.00	0.662983425414365	5	2-13,919-908;15-21,906-900	1-1,920-920[UP5];14-14,907-907[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UUAUGUUCAUUUAAAUGUAGC&UUUAUAUUUAAAUAAAUAUAG	2	0.989088653046503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN7958_c0_g1_911_TPlot.pdf
TRINITY_DN7958_c0_g1:952	si_a454	TRINITY_DN7958_c0_g1	941	961	952	-21.30	-14.20	0.666666666666667	5	1-13,961-949;15-17,947-945	14-14,948-948[SIL];18-21,944-941[UP3]	....(((.(((((((((((((&))))))))))))).)))....	UUAAAUAAAUAACAACAAUUA&UAAUUGUUGUUAUAUAUAAUA	3	0.999999255066705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN7958_c0_g1_952_TPlot.pdf
TRINITY_DN7960_c0_g1:1053	si_a642	TRINITY_DN7960_c0_g1	1042	1062	1053	-25.90	-17.00	0.656370656370656	8	4-13,1059-1050;16-21,1047-1042	1-3,1062-1060[UP5];14-15,1049-1048[SIL]	((((((..((((((((((...&...))))))))))..))))))	CCGAUACCUUACUUAAAAUUG&UUUUUUUGAGUAAUAUAUCGG	2	0.99514114128252	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN7960_c0_g1_1053_TPlot.pdf
TRINITY_DN7960_c0_g1:1941	si_a74	TRINITY_DN7960_c0_g1	1930	1950	1941	-22.20	-15.00	0.675675675675676	9	1-3,1950-1948;6-7,1945-1944;9-21,1942-1930	4-5,1947-1946[SIL];8-8,1943-1943[SIL]	(((((((((((((.((..(((&)))..)).)))))))))))))	UGAUAGUGAGAGAGAAAGUGA&UCAAAUUGUUUUUCAUUAUUA	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN7960_c0_g1_1941_TPlot.pdf
TRINITY_DN7960_c0_g2:811	si_s73	TRINITY_DN7960_c0_g2	801	821	811	-24.00	-16.70	0.695833333333333	7	1-8,821-814;9-15,812-806;17-21,805-801	x-x,813-813[BULt];16-16,x-x[BULq]	(((((-(((((((.((((((((&))))))))-))))))).)))))	AAAGG-AAGAGAGUGAGAUAGA&UCUAUUUU-UUUUCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN7960_c0_g2_811_TPlot.pdf
TRINITY_DN7960_c0_g3:933	si_s260	TRINITY_DN7960_c0_g3	922	942	933	-24.10	-15.90	0.659751037344398	12	1-12,942-931	13-21,930-922[UP3]	.........((((((((((((&)))))))))))).........	UUUCGUUGGGAGUAGUGUGUC&GAUAUAUUACUCAAAAAAAUC	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s260_TRINITY_DN7960_c0_g3_933_TPlot.pdf
TRINITY_DN7966_c0_g1:433	si_a20	TRINITY_DN7966_c0_g1	423	442	433	-26.70	-17.40	0.651685393258427	9.5	1-8,442-435;10-11,433-432;14-20,430-424	9-9,434-434[SIL];12-13,431-431[AILq];21-21,423-423[UP3]	.(((((((.-((.((((((((&)))))))).))..))))))).	AAGGACUAU-GACAAGUGGGC&GCCUAUUUAUUUUUAGUUCUA	2	0.999995968034304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN7966_c0_g1_433_TPlot.pdf
TRINITY_DN7969_c0_g1:441	si_a316	TRINITY_DN7969_c0_g1	430	455	441	-26.30	-18.40	0.699619771863118	16.5	1-7,455-449;8-17,443-434	x-x,448-444[BULt];18-21,433-430[UP3]	....((((((((((.....(((((((&)))))))-----))))))))))....	GUGCAGAUCAUGGAAGAGAUGGAUCC&GGAUUUA-----UCCAUGAUUUUUUU	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN7969_c0_g1_441_TPlot.pdf
TRINITY_DN7969_c0_g1:442	si_a315	TRINITY_DN7969_c0_g1	431	456	442	-27.00	-19.40	0.718518518518518	15.5	1-8,456-449;9-18,443-434	x-x,448-444[BULt];19-21,433-431[UP3]	...((((((((((.....((((((((&))))))))-----))))))))))...	UGCAGAUCAUGGAAGAGAUGGAUCCA&UGGAUUUA-----UCCAUGAUUUUUU	3	0.986038541133192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN7969_c0_g1_442_TPlot.pdf
TRINITY_DN7969_c0_g1:443	si_a314	TRINITY_DN7969_c0_g1	432	457	443	-27.10	-19.60	0.723247232472325	15.5	2-9,456-449;10-19,443-434	1-1,457-457[UP5];x-x,448-444[BULt];20-21,433-432[UP3]	..((((((((((.....((((((((.&.))))))))-----))))))))))..	GCAGAUCAUGGAAGAGAUGGAUCCAG&UUGGAUUUA-----UCCAUGAUUUUU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN7969_c0_g1_443_TPlot.pdf
TRINITY_DN7969_c0_g1:446	si_a777	TRINITY_DN7969_c0_g1	435	455	446	-27.00	-18.10	0.67037037037037	8.5	2-7,454-449;9-17,447-439	1-1,455-455[UP5];8-8,448-448[SIL];18-21,438-435[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	GAUCAUGGAAGAGAUGGAUCC&UGAUUCAACUCUUCUAUUUUU	3	0.999713644355481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN7969_c0_g1_446_TPlot.pdf
TRINITY_DN7969_c0_g1:449	si_a313	TRINITY_DN7969_c0_g1	433	458	449	-28.70	-20.20	0.70383275261324	15.5	2-10,457-449;11-20,443-434	1-1,458-458[UP5];x-x,448-444[BULt];21-21,433-433[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	CAGAUCAUGGAAGAGAUGGAUCCAGA&CUUGGAUUUA-----UCCAUGAUUUU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN7969_c0_g1_449_TPlot.pdf
TRINITY_DN7969_c0_g1:461	si_s808	TRINITY_DN7969_c0_g1	443	470	461	-28.60	-19.30	0.674825174825175	12	1-15,470-456;16-19,448-445	x-x,455-449[BULt];20-21,444-443[UP3]	..((((.......(((((((((((((((&)))))))))))))))-------))))..	AAGAGAUGGAUCCAGAGGUAAUGGAGAU&AUCUUCGUUACCUUU-------UCUUAA	4	0.999999991802264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN7969_c0_g1_461_TPlot.pdf
TRINITY_DN7969_c0_g1:463	si_s806	TRINITY_DN7969_c0_g1	449	472	463	-28.60	-19.10	0.667832167832168	10	3-17,470-456;18-20,452-450	1-2,472-471[UP5];x-x,455-453[BULt];21-21,449-449[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	UGGAUCCAGAGGUAAUGGAGAUUU&UUAUCUUCGUUACCUUU---UCUU	3	0.999999999958611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN7969_c0_g1_463_TPlot.pdf
TRINITY_DN7969_c0_g1:464	si_s805	TRINITY_DN7969_c0_g1	450	473	464	-28.60	-19.10	0.667832167832168	11	4-18,470-456;19-21,452-450	1-3,473-471[UP5];x-x,455-453[BULt]	(((...(((((((((((((((...&...)))))))))))))))---)))	GGAUCCAGAGGUAAUGGAGAUUUA&UUUAUCUUCGUUACCUUU---UCU	3	0.999999999220712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN7969_c0_g1_464_TPlot.pdf
TRINITY_DN7969_c0_g1:465	si_s804	TRINITY_DN7969_c0_g1	454	474	465	-27.90	-18.90	0.67741935483871	11.5	5-19,470-456	1-4,474-471[UP5];20-21,455-454[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCAGAGGUAAUGGAGAUUUAA&UUUUAUCUUCGUUACCUUUUC	4	0.999999984772108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN7969_c0_g1_465_TPlot.pdf
TRINITY_DN7969_c0_g1:468	si_s801	TRINITY_DN7969_c0_g1	457	481	468	-28.20	-20.46	0.725531914893617	15	1-5,481-477;8-21,470-457	6-7,476-471[AILt]	((((((((((((((......(((((&)))))----..))))))))))))))	GAGGUAAUGGAGAUUUAAUUAAUGC&GUAUU----UUAUCUUCGUUACCUU	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN7969_c0_g1_468_TPlot.pdf
TRINITY_DN7969_c0_g1:469	si_s800	TRINITY_DN7969_c0_g1	458	482	469	-29.70	-19.46	0.655218855218855	15	2-6,481-477;9-21,470-458	1-1,482-482[UP5];7-8,476-471[AILt]	(((((((((((((......(((((.&.)))))----..)))))))))))))	AGGUAAUGGAGAUUUAAUUAAUGCA&CGUAUU----UUAUCUUCGUUACCU	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN7969_c0_g1_469_TPlot.pdf
TRINITY_DN7969_c0_g1:537	si_a316	TRINITY_DN7969_c0_g1	526	551	537	-26.30	-18.40	0.699619771863118	16.5	1-7,551-545;8-17,539-530	x-x,544-540[BULt];18-21,529-526[UP3]	....((((((((((.....(((((((&)))))))-----))))))))))....	GUGCAGAUCAUGGAAGAGAUGGAUCC&GGAUUUA-----UCCAUGAUUUUUUU	4	0.999507999331121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN7969_c0_g1_537_TPlot.pdf
TRINITY_DN7969_c0_g1:538	si_a315	TRINITY_DN7969_c0_g1	527	552	538	-27.00	-19.40	0.718518518518518	15.5	1-8,552-545;9-18,539-530	x-x,544-540[BULt];19-21,529-527[UP3]	...((((((((((.....((((((((&))))))))-----))))))))))...	UGCAGAUCAUGGAAGAGAUGGAUCCA&UGGAUUUA-----UCCAUGAUUUUUU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN7969_c0_g1_538_TPlot.pdf
TRINITY_DN7969_c0_g1:539	si_a314	TRINITY_DN7969_c0_g1	528	553	539	-27.10	-19.60	0.723247232472325	15.5	2-9,552-545;10-19,539-530	1-1,553-553[UP5];x-x,544-540[BULt];20-21,529-528[UP3]	..((((((((((.....((((((((.&.))))))))-----))))))))))..	GCAGAUCAUGGAAGAGAUGGAUCCAG&UUGGAUUUA-----UCCAUGAUUUUU	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN7969_c0_g1_539_TPlot.pdf
TRINITY_DN7969_c0_g1:542	si_a777	TRINITY_DN7969_c0_g1	531	551	542	-27.00	-18.10	0.67037037037037	8.5	2-7,550-545;9-17,543-535	1-1,551-551[UP5];8-8,544-544[SIL];18-21,534-531[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	GAUCAUGGAAGAGAUGGAUCC&UGAUUCAACUCUUCUAUUUUU	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN7969_c0_g1_542_TPlot.pdf
TRINITY_DN7969_c0_g1:545	si_a313	TRINITY_DN7969_c0_g1	529	554	545	-28.70	-20.20	0.70383275261324	15.5	2-10,553-545;11-20,539-530	1-1,554-554[UP5];x-x,544-540[BULt];21-21,529-529[UP3]	.((((((((((.....(((((((((.&.)))))))))-----)))))))))).	CAGAUCAUGGAAGAGAUGGAUCCAGA&CUUGGAUUUA-----UCCAUGAUUUU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN7969_c0_g1_545_TPlot.pdf
TRINITY_DN796_c0_g1:1074	si_a180	TRINITY_DN796_c0_g1	1062	1082	1074	-32.10	-23.10	0.719626168224299	7	1-6,1082-1077;8-14,1076-1070;16-21,1067-1062	7-7,x-x[BULq];15-15,1069-1068[AILt]	((((((..(((((((-((((((&)))))).)))))))-.))))))	GGGGAGCUGAUGUUA-CUGGAC&GUCUAGAUAAUAUC-UUUCCCU	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a180_TRINITY_DN796_c0_g1_1074_TPlot.pdf
TRINITY_DN796_c0_g1:1075	si_a179	TRINITY_DN796_c0_g1	1063	1083	1075	-32.90	-22.10	0.671732522796353	7.5	2-7,1082-1077;9-15,1076-1070;17-21,1067-1063	1-1,1083-1083[UP5];8-8,x-x[BULq];16-16,1069-1068[AILt]	(((((..(((((((-((((((.&.)))))).)))))))-.)))))	GGGAGCUGAUGUUA-CUGGACA&CGUCUAGAUAAUAUC-UUUCCC	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a179_TRINITY_DN796_c0_g1_1075_TPlot.pdf
TRINITY_DN796_c0_g1:1096	si_a70	TRINITY_DN796_c0_g1	1085	1105	1096	-23.90	-16.20	0.677824267782427	8	1-3,1105-1103;5-9,1101-1097;11-20,1095-1086	4-4,1102-1102[SIL];10-10,1096-1096[SIL];21-21,1085-1085[UP3]	.((((((((((.(((((.(((&))).))))).)))))))))).	UAUGGAAGACAUUUUGGUGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.9999999945586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN796_c0_g1_1096_TPlot.pdf
TRINITY_DN796_c0_g1:1097	si_a69	TRINITY_DN796_c0_g1	1086	1106	1097	-24.00	-16.30	0.679166666666667	8	2-4,1105-1103;6-10,1101-1097;12-21,1095-1086	1-1,1106-1106[UP5];5-5,1102-1102[SIL];11-11,1096-1096[SIL]	((((((((((.(((((.(((.&.))).))))).))))))))))	AUGGAAGACAUUUUGGUGGAC&UUCUUUCAAAUUGUUUUUCAU	3	0.999999996719684	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN796_c0_g1_1097_TPlot.pdf
TRINITY_DN796_c0_g1:1125	si_a758	TRINITY_DN796_c0_g1	1114	1134	1125	-34.00	-22.60	0.664705882352941	7.5	1-7,1134-1128;9-16,1126-1119	8-8,1127-1127[SIL];17-21,1118-1114[UP3]	.....((((((((.(((((((&))))))).)))))))).....	UACAGGAAAACCCCAAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN796_c0_g1_1125_TPlot.pdf
TRINITY_DN796_c0_g1:1126	si_a757	TRINITY_DN796_c0_g1	1115	1135	1126	-33.10	-24.40	0.737160120845921	6.5	1-8,1135-1128;10-17,1126-1119	9-9,1127-1127[SIL];18-21,1118-1115[UP3]	....((((((((.((((((((&)))))))).))))))))....	ACAGGAAAACCCCAAGGAGGU&ACCUCCUUUGGGUUUUUGAUU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN796_c0_g1_1126_TPlot.pdf
TRINITY_DN796_c0_g1:1127	si_a756	TRINITY_DN796_c0_g1	1116	1136	1127	-33.10	-24.70	0.746223564954683	6.5	2-9,1135-1128;11-18,1126-1119	1-1,1136-1136[UP5];10-10,1127-1127[SIL];19-21,1118-1116[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	CAGGAAAACCCCAAGGAGGUG&AACCUCCUUUGGGUUUUUGAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN796_c0_g1_1127_TPlot.pdf
TRINITY_DN796_c0_g1:1128	si_a755	TRINITY_DN796_c0_g1	1117	1137	1128	-34.90	-24.70	0.707736389684814	7.5	3-10,1135-1128;12-19,1126-1119	1-2,1137-1136[UP5];11-11,1127-1127[SIL];20-21,1118-1117[UP3]	..((((((((.((((((((..&..)))))))).))))))))..	AGGAAAACCCCAAGGAGGUGU&GAACCUCCUUUGGGUUUUUGA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN796_c0_g1_1128_TPlot.pdf
TRINITY_DN796_c0_g1:1129	si_a754	TRINITY_DN796_c0_g1	1118	1138	1129	-34.60	-24.70	0.713872832369942	8.5	4-11,1135-1128;13-20,1126-1119	1-3,1138-1136[UP5];12-12,1127-1127[SIL];21-21,1118-1118[UP3]	.((((((((.((((((((...&...)))))))).)))))))).	GGAAAACCCCAAGGAGGUGUA&UGAACCUCCUUUGGGUUUUUG	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN796_c0_g1_1129_TPlot.pdf
TRINITY_DN796_c0_g1:1130	si_a753	TRINITY_DN796_c0_g1	1119	1139	1130	-33.10	-24.60	0.743202416918429	8.5	5-12,1135-1128;14-21,1126-1119	1-4,1139-1136[UP5];13-13,1127-1127[SIL]	((((((((.((((((((....&....)))))))).))))))))	GAAAACCCCAAGGAGGUGUAU&AUGAACCUCCUUUGGGUUUUU	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN796_c0_g1_1130_TPlot.pdf
TRINITY_DN796_c0_g1:1131	si_a752	TRINITY_DN796_c0_g1	1120	1140	1131	-34.80	-23.30	0.669540229885058	10	6-13,1135-1128;15-21,1126-1120	1-5,1140-1136[UP5];14-14,1127-1127[SIL]	(((((((.((((((((.....&.....)))))))).)))))))	AAAACCCCAAGGAGGUGUAUU&CAUGAACCUCCUUUGGGUUUU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN796_c0_g1_1131_TPlot.pdf
TRINITY_DN796_c0_g1:322	si_s26	TRINITY_DN796_c0_g1	311	331	322	-26.70	-18.20	0.681647940074906	8	2-14,330-318	1-1,331-331[UP5];15-21,317-311[UP3]	.......(((((((((((((.&.))))))))))))).......	ACUGUUCUAGUUGCAAUCAAA&AUUGAUUGCAACUAAAUCUUU	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN796_c0_g1_322_TPlot.pdf
TRINITY_DN796_c0_g1:323	si_s25	TRINITY_DN796_c0_g1	312	332	323	-27.10	-18.20	0.671586715867159	9	3-15,330-318	1-2,332-331[UP5];16-21,317-312[UP3]	......(((((((((((((..&..)))))))))))))......	CUGUUCUAGUUGCAAUCAAAA&UAUUGAUUGCAACUAAAUCUU	3	0.950017954945061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s25_TRINITY_DN796_c0_g1_323_TPlot.pdf
TRINITY_DN796_c0_g1:325	si_s23	TRINITY_DN796_c0_g1	314	334	325	-27.00	-18.20	0.674074074074074	11	5-17,330-318	1-4,334-331[UP5];18-21,317-314[UP3]	....(((((((((((((....&....)))))))))))))....	GUUCUAGUUGCAAUCAAAACU&UAUAUUGAUUGCAACUAAAUC	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s23_TRINITY_DN796_c0_g1_325_TPlot.pdf
TRINITY_DN796_c0_g1:326	si_s22	TRINITY_DN796_c0_g1	315	335	326	-26.70	-18.20	0.681647940074906	12	6-18,330-318	1-5,335-331[UP5];19-21,317-315[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUCUAGUUGCAAUCAAAACUA&CUAUAUUGAUUGCAACUAAAU	3	0.93880273783571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN796_c0_g1_326_TPlot.pdf
TRINITY_DN796_c0_g1:327	si_s21	TRINITY_DN796_c0_g1	316	336	327	-27.40	-18.20	0.664233576642336	13	7-19,330-318	1-6,336-331[UP5];20-21,317-316[UP3]	..(((((((((((((......&......)))))))))))))..	UCUAGUUGCAAUCAAAACUAU&ACUAUAUUGAUUGCAACUAAA	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN796_c0_g1_327_TPlot.pdf
TRINITY_DN796_c0_g1:948	si_a276	TRINITY_DN796_c0_g1	931	957	948	-37.90	-25.10	0.662269129287599	15	1-4,957-954;6-10,952-948;11-15,942-938;16-21,936-931	5-5,953-953[SIL];x-x,947-943[BULt];x-x,937-937[BULt]	((((((.(((((.....(((((.((((&)))).)))))-----)))))-))))))	CCGAGCGGGUCUACAGCUUUCGCGGGC&GCCUACGAAA-----AGAUC-GCUUGG	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a276_TRINITY_DN796_c0_g1_948_TPlot.pdf
TRINITY_DN7973_c1_g4:385	si_s776	TRINITY_DN7973_c1_g4	374	394	385	-25.10	-18.70	0.745019920318725	6.5	1-15,394-380;18-20,377-375	16-17,379-378[SIL];21-21,374-374[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	AUGUCAUGUAGUAGUAGUAGU&AUUACUAUUGCUAUAAAACAA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN7973_c1_g4_385_TPlot.pdf
TRINITY_DN7977_c0_g1:2360	si_s770	TRINITY_DN7977_c0_g1	2348	2369	2360	-26.60	-19.00	0.714285714285714	8.5	3-10,2367-2360;11-21,2358-2348	1-2,2369-2368[UP5];x-x,2359-2359[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	UAUAGCAGUAGAUGAUUGGUGA&CGAUUAAUUA-CUAUUGCUAUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN7977_c0_g1_2360_TPlot.pdf
TRINITY_DN797_c0_g1:1397	si_a75	TRINITY_DN797_c0_g1	1386	1406	1397	-21.30	-14.40	0.676056338028169	6	2-4,1405-1403;6-21,1401-1386	1-1,1406-1406[UP5];5-5,1402-1402[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	UUAAUAAUGGAAGAUAUUUUU&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999808535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN797_c0_g1_1397_TPlot.pdf
TRINITY_DN797_c2_g1:350	si_a454	TRINITY_DN797_c2_g1	338	359	350	-21.30	-14.70	0.690140845070423	5	1-13,359-347;15-19,344-340	14-14,346-345[AILt];20-21,339-338[UP3]	..(((((..(((((((((((((&)))))))))))))-.)))))..	UUUUAUGGAAUAACAACAAUUG&UAAUUGUUGUUAU-AUAUAAUA	4	0.999735137902139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN797_c2_g1_350_TPlot.pdf
TRINITY_DN797_c2_g1:565	si_a642	TRINITY_DN797_c2_g1	554	574	565	-25.90	-19.60	0.756756756756757	4.5	1-19,574-556	20-21,555-554[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UAGGUAUAUUACUUAAAAGAA&UUUUUUUGAGUAAUAUAUCGG	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN797_c2_g1_565_TPlot.pdf
TRINITY_DN797_c2_g1:566	si_a641	TRINITY_DN797_c2_g1	555	575	566	-23.60	-19.60	0.830508474576271	4.5	2-20,574-556	1-1,575-575[UP5];21-21,555-555[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	AGGUAUAUUACUUAAAAGAAA&AUUUUUUUGAGUAAUAUAUCG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN797_c2_g1_566_TPlot.pdf
TRINITY_DN797_c2_g1:567	si_a640	TRINITY_DN797_c2_g1	556	576	567	-24.10	-19.20	0.796680497925311	5.5	3-21,574-556	1-2,576-575[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GGUAUAUUACUUAAAAGAAAA&GAUUUUUUUGAGUAAUAUAUC	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN797_c2_g1_567_TPlot.pdf
TRINITY_DN797_c7_g1:36	si_a79	TRINITY_DN797_c7_g1	25	45	36	-22.20	-15.20	0.684684684684685	9.5	1-16,45-30	17-21,29-25[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAAAUGAUAAUGGAGGGCAA&UUGUUUUUCAUUAUUAAGAAA	4	0.999992550989588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN797_c7_g1_36_TPlot.pdf
TRINITY_DN797_c7_g1:38	si_a77	TRINITY_DN797_c7_g1	27	47	38	-22.20	-15.20	0.684684684684685	10.5	3-18,45-30	1-2,47-46[UP5];19-21,29-27[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAUGAUAAUGGAGGGCAAGA&AAUUGUUUUUCAUUAUUAAGA	4	0.999985874321336	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN797_c7_g1_38_TPlot.pdf
TRINITY_DN797_c7_g1:41	si_a74	TRINITY_DN797_c7_g1	30	51	41	-22.20	-17.80	0.801801801801802	8	1-4,51-48;6-21,45-30	5-5,47-46[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	UGAUAAUGGAGGGCAAGAUUGA&UCAA-AUUGUUUUUCAUUAUUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN797_c7_g1_41_TPlot.pdf
TRINITY_DN797_c7_g1:42	si_a73	TRINITY_DN797_c7_g1	31	52	42	-21.90	-17.60	0.80365296803653	8	1-5,52-48;7-21,45-31	6-6,47-46[AILt]	(((((((((((((((..(((((&)))))-.)))))))))))))))	GAUAAUGGAGGGCAAGAUUGAA&UUCAA-AUUGUUUUUCAUUAUU	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN797_c7_g1_42_TPlot.pdf
TRINITY_DN797_c7_g1:43	si_a72	TRINITY_DN797_c7_g1	32	53	43	-21.90	-16.90	0.771689497716895	7.5	1-6,53-48;8-21,45-32	7-7,47-46[AILt]	((((((((((((((..((((((&))))))-.))))))))))))))	AUAAUGGAGGGCAAGAUUGAAG&UUUCAA-AUUGUUUUUCAUUAU	2	0.893574151005791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN797_c7_g1_43_TPlot.pdf
TRINITY_DN797_c8_g1:204	si_s874	TRINITY_DN797_c8_g1	185	213	204	-28.00	-19.00	0.678571428571429	18	1-12,213-202;13-21,193-185	x-x,201-194[BULt]	(((((((((........((((((((((((&))))))))))))--------)))))))))	UUGUUUUUGAGGUGUUUGUUUUAAGACCG&CGGUCUUAGAAC--------UAAAAAUAA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN797_c8_g1_204_TPlot.pdf
TRINITY_DN7981_c0_g1:351	si_s69	TRINITY_DN7981_c0_g1	340	359	351	-23.40	-17.50	0.747863247863248	7.5	3-6,357-354;8-21,353-340	1-2,359-358[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAGGAAGAAAGAU-GAAGGC&AACUUCUAUUUUUUUUCUUUC	4	0.999999985083225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN7981_c0_g1_351_TPlot.pdf
TRINITY_DN7986_c0_g1:1724	si_a320	TRINITY_DN7986_c0_g1	1713	1733	1724	-24.40	-16.50	0.676229508196721	9	4-13,1730-1721;16-21,1718-1713	1-3,1733-1731[UP5];14-15,1720-1719[SIL]	((((((..((((((((((...&...))))))))))..))))))	GGAUGAUUAAAUUAUGGACUA&UUAUCCAUGAUUUUUUUAUUC	4	0.999998929956348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN7986_c0_g1_1724_TPlot.pdf
TRINITY_DN7987_c0_g1:5573	si_s298	TRINITY_DN7987_c0_g1	5560	5582	5573	-30.80	-20.30	0.659090909090909	12	1-10,5582-5573;11-15,5570-5566	x-x,5572-5571[BULt];16-21,5565-5560[UP3]	......(((((..((((((((((&))))))))))--)))))......	CGUCGAUCGCAAGGUUCCAGUCG&CGAUUGGAAU--UGCGAAAAUUC	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN7987_c0_g1_5573_TPlot.pdf
TRINITY_DN7987_c0_g1:5576	si_s295	TRINITY_DN7987_c0_g1	5563	5585	5576	-32.20	-21.60	0.670807453416149	9.5	2-2,5584-5584;4-13,5582-5573;14-18,5570-5566	1-1,5585-5585[UP5];3-3,5583-5583[SIL];x-x,5572-5571[BULt];19-21,5565-5563[UP3]	...(((((..((((((((((.(.&.).))))))))))--)))))...	CGAUCGCAAGGUUCCAGUCGUCG&AGUCGAUUGGAAU--UGCGAAAA	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN7987_c0_g1_5576_TPlot.pdf
TRINITY_DN7987_c0_g1:7156	si_a484	TRINITY_DN7987_c0_g1	7146	7165	7156	-27.30	-17.90	0.655677655677656	6.5	2-14,7164-7152;16-16,7150-7150;18-20,7149-7147	1-1,7165-7165[UP5];15-15,7151-7151[SIL];17-17,x-x[BULq];21-21,7146-7146[UP3]	.(((-(.(((((((((((((.&.))))))))))))).).))).	UGCG-CUUAUUCUAUGUGACU&UGUUAUAUAGAAUAUGUCGUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN7987_c0_g1_7156_TPlot.pdf
TRINITY_DN7987_c0_g1:7157	si_a483	TRINITY_DN7987_c0_g1	7147	7166	7157	-27.40	-17.90	0.653284671532847	7.5	3-15,7164-7152;17-17,7150-7150;19-21,7149-7147	1-2,7166-7165[UP5];16-16,7151-7151[SIL];18-18,x-x[BULq]	(((-(.(((((((((((((..&..))))))))))))).).)))	GCG-CUUAUUCUAUGUGACUC&UUGUUAUAUAGAAUAUGUCGU	2	0.883886108709291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a483_TRINITY_DN7987_c0_g1_7157_TPlot.pdf
TRINITY_DN7987_c0_g1:7620	si_s473	TRINITY_DN7987_c0_g1	7609	7629	7620	-31.80	-21.60	0.679245283018868	9.5	4-14,7626-7616;16-20,7614-7610	1-3,7629-7627[UP5];15-15,7615-7615[SIL];21-21,7609-7609[UP3]	.(((((.(((((((((((...&...))))))))))).))))).	GAAGUGAGGGGUCCGUUGACC&AUCCAACGGAUCCUAUAUUUA	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s473_TRINITY_DN7987_c0_g1_7620_TPlot.pdf
TRINITY_DN7987_c0_g1:7691	si_s632	TRINITY_DN7987_c0_g1	7680	7700	7691	-38.20	-25.00	0.654450261780105	8.5	1-6,7700-7695;8-10,7693-7691;12-21,7689-7680	7-7,7694-7694[SIL];11-11,7690-7690[SIL]	((((((((((.(((.((((((&)))))).))).))))))))))	GGGCGGAUGCAUGCCGAGAGA&UCUUUUCGUAGGCGUUUGCCC	4	0.999884008728345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN7987_c0_g1_7691_TPlot.pdf
TRINITY_DN7987_c0_g1:7750	si_s616	TRINITY_DN7987_c0_g1	7738	7759	7750	-28.30	-19.10	0.674911660777385	14.5	8-13,7752-7747;14-21,7745-7738	1-7,7759-7753[UP5];x-x,7746-7746[BULt]	((((((((.((((((.......&.......))))))-))))))))	AGAGAUCGUCUUGGAGUGUCUA&UUUUAAAUCCAAG-CGAUCUUU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN7987_c0_g1_7750_TPlot.pdf
TRINITY_DN7988_c0_g1:990	si_s606	TRINITY_DN7988_c0_g1	979	999	990	-28.20	-20.60	0.730496453900709	5.5	2-16,998-984;18-21,982-979	1-1,999-999[UP5];17-17,983-983[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	UGGAGUUAGGAAAGAUUUGUA&AGCGAAUCUUUUUUAAAUCCA	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN7988_c0_g1_990_TPlot.pdf
TRINITY_DN7988_c0_g1:991	si_s605	TRINITY_DN7988_c0_g1	980	1000	991	-27.50	-19.10	0.694545454545455	7	3-17,998-984;19-21,982-980	1-2,1000-999[UP5];18-18,983-983[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GGAGUUAGGAAAGAUUUGUAA&AAGCGAAUCUUUUUUAAAUCC	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN7988_c0_g1_991_TPlot.pdf
TRINITY_DN7989_c0_g1:774	si_a441	TRINITY_DN7989_c0_g1	763	783	774	-29.30	-20.90	0.713310580204778	4	1-4,783-780;6-18,778-766;20-21,764-763	5-5,779-779[SIL];19-19,765-765[SIL]	((.(((((((((((((.((((&)))).))))))))))))).))	AAGAAUUAUCUCAUGUACAAC&GUUGGAUAUGAGAUAAUUGUU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN7989_c0_g1_774_TPlot.pdf
TRINITY_DN798_c0_g1:1094	si_s741	TRINITY_DN798_c0_g1	1083	1103	1094	-33.80	-22.50	0.665680473372781	9	2-16,1102-1088	1-1,1103-1103[UP5];17-21,1087-1083[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CUUGCGUCAGUUUGUUCACCG&GGGUGAAUAGAUUGACCUUAA	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN798_c0_g1_1094_TPlot.pdf
TRINITY_DN798_c0_g1:815	si_a781	TRINITY_DN798_c0_g1	804	825	815	-27.40	-18.50	0.675182481751825	6	1-3,825-823;4-14,821-811;16-18,809-807	x-x,822-822[BULt];15-15,810-810[SIL];19-21,806-804[UP3]	...(((.(((((((((((.(((&)))-))))))))))).)))...	AACGAAUAAUAGAAGAGUCUGA&UCA-ACUCUUCUAUUUUUCUAU	3	0.999965820394381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN798_c0_g1_815_TPlot.pdf
TRINITY_DN798_c0_g1:816	si_a780	TRINITY_DN798_c0_g1	805	826	816	-27.30	-19.40	0.710622710622711	5	1-4,826-823;5-15,821-811;17-19,809-807	x-x,822-822[BULt];16-16,810-810[SIL];20-21,806-805[UP3]	..(((.(((((((((((.((((&))))-))))))))))).)))..	ACGAAUAAUAGAAGAGUCUGAA&UUCA-ACUCUUCUAUUUUUCUA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN798_c0_g1_816_TPlot.pdf
TRINITY_DN798_c0_g1:817	si_a779	TRINITY_DN798_c0_g1	806	827	817	-27.00	-19.40	0.718518518518518	5	2-5,826-823;6-16,821-811;18-20,809-807	1-1,827-827[UP5];x-x,822-822[BULt];17-17,810-810[SIL];21-21,806-806[UP3]	.(((.(((((((((((.((((.&.))))-))))))))))).))).	CGAAUAAUAGAAGAGUCUGAAA&AUUCA-ACUCUUCUAUUUUUCU	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN798_c0_g1_817_TPlot.pdf
TRINITY_DN798_c0_g1:894	si_s634	TRINITY_DN798_c0_g1	884	903	894	-38.30	-25.00	0.652741514360313	9.5	4-6,900-898;8-14,896-890;16-21,889-884	1-3,903-901[UP5];7-7,897-897[SIL];15-15,x-x[BULq]	((((((-(((((((.(((...&...))).))))))).))))))	GGGGGU-AGCGCCUCCGACAG&UUUUCGUAGGCGUUUGCCCUC	4	0.999996804497116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN798_c0_g1_894_TPlot.pdf
TRINITY_DN798_c0_g1:964	si_s79	TRINITY_DN798_c0_g1	953	973	964	-26.20	-17.40	0.66412213740458	9	1-9,973-965;12-21,962-953	10-11,964-963[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	AAGGAGGAGGCUAAGAGGAGG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN798_c0_g1_964_TPlot.pdf
TRINITY_DN7992_c0_g1:1616	si_s761	TRINITY_DN7992_c0_g1	1603	1625	1616	-25.90	-17.08	0.659459459459459	10.5	1-11,1625-1615;14-20,1610-1604	12-13,1614-1611[AILt];21-21,1603-1603[UP3]	.(((((((....(((((((((((&)))))))))))--..))))))).	UGUGGUUGUCUGUGUUGUUGUUU&AAACAACAACG--AUUAAUUACU	4	0.800133174018696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN7992_c0_g1_1616_TPlot.pdf
TRINITY_DN7992_c0_g1:1617	si_s760	TRINITY_DN7992_c0_g1	1604	1626	1617	-25.20	-16.88	0.66984126984127	9.5	2-12,1625-1615;15-21,1610-1604	1-1,1626-1626[UP5];13-14,1614-1611[AILt]	(((((((....(((((((((((.&.)))))))))))--..)))))))	GUGGUUGUCUGUGUUGUUGUUUA&AAAACAACAACG--AUUAAUUAC	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s760_TRINITY_DN7992_c0_g1_1617_TPlot.pdf
TRINITY_DN7992_c0_g1:8466	si_a892	TRINITY_DN7992_c0_g1	8455	8475	8466	-21.30	-15.60	0.732394366197183	6	1-4,8475-8472;6-18,8470-8458	5-5,8471-8471[SIL];19-21,8457-8455[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CGAACUUAUUGUUACUUUAUU&AAUAUAGUAAUAAUAAGUAAU	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN7992_c0_g1_8466_TPlot.pdf
TRINITY_DN7992_c0_g1:8837	si_s441	TRINITY_DN7992_c0_g1	8826	8850	8837	-23.20	-15.50	0.668103448275862	12.5	1-6,8850-8845;7-19,8840-8828	x-x,8844-8841[BULt];20-21,8827-8826[UP3]	..(((((((((((((....((((((&))))))----)))))))))))))..	CAUGUUGUAUAUAGUUAUUGUGUAA&UUACAU----AUUAUAUAUAACAAC	3	0.952001194752809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s441_TRINITY_DN7992_c0_g1_8837_TPlot.pdf
TRINITY_DN7992_c0_g1:8839	si_s439	TRINITY_DN7992_c0_g1	8828	8852	8839	-21.50	-15.30	0.711627906976744	13.5	3-8,8850-8845;9-21,8840-8828	1-2,8852-8851[UP5];x-x,8844-8841[BULt]	(((((((((((((....((((((..&..))))))----)))))))))))))	UGUUGUAUAUAGUUAUUGUGUAAAA&AAUUACAU----AUUAUAUAUAACA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN7992_c0_g1_8839_TPlot.pdf
TRINITY_DN7992_c0_g1:8840	si_s438	TRINITY_DN7992_c0_g1	8829	8853	8840	-21.20	-13.90	0.655660377358491	15.5	4-9,8850-8845;10-21,8840-8829	1-3,8853-8851[UP5];x-x,8844-8841[BULt]	((((((((((((....((((((...&...))))))----))))))))))))	GUUGUAUAUAGUUAUUGUGUAAAAU&UAAUUACAU----AUUAUAUAUAAC	3	0.998865647703993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN7992_c0_g1_8840_TPlot.pdf
TRINITY_DN7992_c0_g1:933	si_a874	TRINITY_DN7992_c0_g1	922	942	933	-26.70	-18.70	0.700374531835206	7.5	3-20,940-923	1-2,942-941[UP5];21-21,922-922[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UUUGAUUGUAAUUAAGUUUAC&AAAGAUUUAGUUGCAAUCAAU	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN7992_c0_g1_933_TPlot.pdf
TRINITY_DN7992_c1_g1:28	si_s437	TRINITY_DN7992_c1_g1	17	37	28	-19.70	-13.30	0.6751269035533	11.5	1-11,37-27;13-17,25-21	12-12,26-26[SIL];18-21,20-17[UP3]	....(((((.(((((((((((&))))))))))).)))))....	AAAGGUGUGUUGUGUGGUUGU&AUAAUUACAUAUUAUAUAUAA	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN7992_c1_g1_28_TPlot.pdf
TRINITY_DN7997_c0_g1:746	si_s95	TRINITY_DN7997_c0_g1	733	755	746	-36.30	-26.20	0.721763085399449	6.5	2-12,754-744;13-15,742-740;16-20,738-734	1-1,755-755[UP5];x-x,743-743[BULt];x-x,739-739[BULt];21-21,733-733[UP3]	.(((((.(((.(((((((((((.&.)))))))))))-)))-))))).	ACGAUCUCGAGAGCGAAGAGGAU&UUCUUCUUCGCU-UCG-GAUUGG	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN7997_c0_g1_746_TPlot.pdf
TRINITY_DN7997_c0_g1:748	si_s93	TRINITY_DN7997_c0_g1	735	757	748	-34.80	-23.30	0.669540229885058	8.5	4-14,754-744;15-17,742-740;18-21,738-735	1-3,757-755[UP5];x-x,743-743[BULt];x-x,739-739[BULt]	((((.(((.(((((((((((...&...)))))))))))-)))-))))	GAUCUCGAGAGCGAAGAGGAUUU&UCUUCUUCUUCGCU-UCG-GAUU	4	0.999999999744379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN7997_c0_g1_748_TPlot.pdf
TRINITY_DN7997_c0_g1:771	si_a758	TRINITY_DN7997_c0_g1	757	780	771	-34.00	-23.00	0.676470588235294	12.5	1-10,780-771;11-17,767-761	x-x,770-768[BULt];18-21,760-757[UP3]	....(((((((...((((((((((&))))))))))---)))))))....	UGUACAAAGACCGGCCGAGGGAGG&CCUCCUUUGG---GUUUUUGAUUG	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN7997_c0_g1_771_TPlot.pdf
TRINITY_DN7997_c0_g1:772	si_a757	TRINITY_DN7997_c0_g1	758	781	772	-33.10	-23.20	0.700906344410876	12.5	2-11,780-771;12-18,767-761	1-1,781-781[UP5];x-x,770-768[BULt];19-21,760-758[UP3]	...(((((((...((((((((((.&.))))))))))---)))))))...	GUACAAAGACCGGCCGAGGGAGGG&ACCUCCUUUGG---GUUUUUGAUU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN7997_c0_g1_772_TPlot.pdf
TRINITY_DN7997_c0_g1:773	si_a756	TRINITY_DN7997_c0_g1	759	782	773	-33.10	-23.20	0.700906344410876	13.5	3-12,780-771;13-19,767-761	1-2,782-781[UP5];x-x,770-768[BULt];20-21,760-759[UP3]	..(((((((...((((((((((..&..))))))))))---)))))))..	UACAAAGACCGGCCGAGGGAGGGG&AACCUCCUUUGG---GUUUUUGAU	1	0.0819462750848905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN7997_c0_g1_773_TPlot.pdf
TRINITY_DN7997_c0_g1:774	si_a755	TRINITY_DN7997_c0_g1	760	783	774	-34.90	-23.20	0.664756446991404	11.5	4-13,780-771;14-20,767-761	1-3,783-781[UP5];x-x,770-768[BULt];21-21,760-760[UP3]	.(((((((...((((((((((...&...))))))))))---))))))).	ACAAAGACCGGCCGAGGGAGGGGG&GAACCUCCUUUGG---GUUUUUGA	2	0.997190032184006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN7997_c0_g1_774_TPlot.pdf
TRINITY_DN7998_c0_g1:2285	si_a318	TRINITY_DN7998_c0_g1	2274	2294	2285	-22.50	-15.60	0.693333333333333	7	2-16,2293-2279;18-19,2277-2276	1-1,2294-2294[UP5];17-17,2278-2278[SIL];20-21,2275-2274[UP3]	..((.(((((((((((((((.&.))))))))))))))).))..	AGAAUAGAGUUAUGGAUAGAG&AUUUAUCCAUGAUUUUUUUAU	2	0.999980412043275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN7998_c0_g1_2285_TPlot.pdf
TRINITY_DN79_c0_g1:244	si_s893	TRINITY_DN79_c0_g1	233	252	244	-29.10	-19.20	0.65979381443299	7	2-7,251-246;9-17,245-237	1-1,252-252[UP5];8-8,x-x[BULq];18-21,236-233[UP3]	....(((((((((-((((((.&.)))))).)))))))))....	ACAAGAAGAGAAA-CCUAUUG&AAAUAGGCUUUCUCUUCAAUU	2	0.999980654327022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN79_c0_g1_244_TPlot.pdf
TRINITY_DN79_c0_g1:245	si_s892	TRINITY_DN79_c0_g1	234	253	245	-29.50	-19.20	0.650847457627119	8	3-8,251-246;10-18,245-237	1-2,253-252[UP5];9-9,x-x[BULq];19-21,236-234[UP3]	...(((((((((-((((((..&..)))))).)))))))))...	CAAGAAGAGAAA-CCUAUUGG&UAAAUAGGCUUUCUCUUCAAU	3	0.999999943041421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN79_c0_g1_245_TPlot.pdf
TRINITY_DN79_c0_g1:522	si_s69	TRINITY_DN79_c0_g1	511	531	522	-23.40	-16.80	0.717948717948718	8.5	2-17,530-515	1-1,531-531[UP5];18-21,514-511[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUUUGGAAAAAGAUAGGGGUG&AACUUCUAUUUUUUUUCUUUC	2	0.999999989615607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN79_c0_g1_522_TPlot.pdf
TRINITY_DN79_c0_g1:523	si_s68	TRINITY_DN79_c0_g1	512	532	523	-23.10	-16.80	0.727272727272727	9.5	3-18,530-515	1-2,532-531[UP5];19-21,514-512[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUGGAAAAAGAUAGGGGUGU&CAACUUCUAUUUUUUUUCUUU	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN79_c0_g1_523_TPlot.pdf
TRINITY_DN79_c0_g1:713	si_a503	TRINITY_DN79_c0_g1	701	722	713	-32.10	-21.30	0.663551401869159	9	2-10,721-713;11-13,710-708;16-21,706-701	1-1,722-722[UP5];x-x,712-711[BULt];14-15,707-707[AILq]	((((((.-(((..(((((((((.&.)))))))))--)))..))))))	CAUUCCU-GGACCAGACGGAGAU&UUUUUCGUCU--UCCUUGGAAUG	4	0.9999999783707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN79_c0_g1_713_TPlot.pdf
TRINITY_DN8003_c0_g1:205	si_s80	TRINITY_DN8003_c0_g1	194	214	205	-28.20	-22.40	0.794326241134752	6	3-15,212-200;17-21,198-194	1-2,214-213[UP5];16-16,199-199[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GGGGAUGAAGGGAAAGAAACA&UUUUUCUUUCCUUUCUUCUUC	2	0.994956289482305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8003_c0_g1_205_TPlot.pdf
TRINITY_DN800_c0_g1:1878	si_s533	TRINITY_DN800_c0_g1	1866	1887	1878	-28.80	-19.10	0.663194444444445	9.5	2-11,1886-1877;13-20,1874-1867	1-1,1887-1887[UP5];12-12,1876-1875[AILt];21-21,1866-1866[UP3]	.((((((((..((((((((((.&.))))))))))-.)))))))).	AUGGUCGGAAAUGAAGAUGAUG&AAUCAUUUUUG-AUCCGAUCAA	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN800_c0_g1_1878_TPlot.pdf
TRINITY_DN800_c0_g1:1879	si_s532	TRINITY_DN800_c0_g1	1867	1888	1879	-28.70	-18.90	0.658536585365854	9.5	3-12,1886-1877;14-21,1874-1867	1-2,1888-1887[UP5];13-13,1876-1875[AILt]	((((((((..((((((((((..&..))))))))))-.))))))))	UGGUCGGAAAUGAAGAUGAUGG&AAAUCAUUUUUG-AUCCGAUCA	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN800_c0_g1_1879_TPlot.pdf
TRINITY_DN800_c0_g1:1960	si_a17	TRINITY_DN800_c0_g1	1949	1969	1960	-24.30	-16.70	0.687242798353909	10.5	4-17,1966-1953	1-3,1969-1967[UP5];18-21,1952-1949[UP3]	....((((((((((((((...&...))))))))))))))....	AGUGAAAAGUAAAUGGGCAUA&AAAGCCUAUUUAUUUUUAGUU	4	0.999972084218589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN800_c0_g1_1960_TPlot.pdf
TRINITY_DN8010_c0_g1:1077	si_a770	TRINITY_DN8010_c0_g1	1054	1086	1077	-28.70	-18.70	0.651567944250871	16	2-14,1085-1073;15-21,1060-1054	1-1,1086-1086[UP5];x-x,1072-1061[BULt]	(((((((............(((((((((((((.&.)))))))))))))------------)))))))	GAAGAGUUAAGUGAGAAAGUGAAUCAGUUAGAG&UUUUGAUUGAUUCA------------ACUCUUC	3	0.999561940111453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN8010_c0_g1_1077_TPlot.pdf
TRINITY_DN8013_c0_g1:555	si_a21	TRINITY_DN8013_c0_g1	544	567	555	-24.30	-16.50	0.679012345679012	14	1-4,567-564;5-18,560-547	x-x,563-561[BULt];19-21,546-544[UP3]	...((((((((((((((...((((&))))---))))))))))))))...	AGCGGACUGGGAAUGAAAUCUGGG&CCUA---UUUAUUUUUAGUUCUAA	4	0.999961159251471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN8013_c0_g1_555_TPlot.pdf
TRINITY_DN8013_c0_g2:2010	si_s75	TRINITY_DN8013_c0_g2	1998	2019	2010	-24.00	-15.60	0.65	9	3-8,2017-2012;10-14,2010-2006;15-21,2004-1998	1-2,2019-2018[UP5];9-9,2011-2011[SIL];x-x,2005-2005[BULt]	(((((((.(((((.((((((..&..)))))).)))))-)))))))	AGAAAGGCAAGGAUGGAAAAGA&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8013_c0_g2_2010_TPlot.pdf
TRINITY_DN8013_c0_g2:2812	si_a548	TRINITY_DN8013_c0_g2	2801	2821	2812	-27.20	-18.60	0.683823529411765	6	3-14,2819-2808;16-20,2806-2802	1-2,2821-2820[UP5];15-15,2807-2807[SIL];21-21,2801-2801[UP3]	.(((((.((((((((((((..&..)))))))))))).))))).	AAGAUACAGAAAUGGAUUGCA&UUCAAUCUAUUUCUUUAUCUC	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN8013_c0_g2_2812_TPlot.pdf
TRINITY_DN8013_c0_g2:2813	si_a547	TRINITY_DN8013_c0_g2	2802	2822	2813	-26.90	-18.60	0.691449814126394	7	4-15,2819-2808;17-21,2806-2802	1-3,2822-2820[UP5];16-16,2807-2807[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	AGAUACAGAAAUGGAUUGCAU&GUUCAAUCUAUUUCUUUAUCU	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN8013_c0_g2_2813_TPlot.pdf
TRINITY_DN8013_c0_g2:2848	si_s481	TRINITY_DN8013_c0_g2	2837	2857	2848	-23.00	-15.80	0.68695652173913	7.5	1-12,2857-2846;14-16,2844-2842	13-13,2845-2845[SIL];17-21,2841-2837[UP3]	.....(((.((((((((((((&)))))))))))).))).....	CCCUGGAACAGAUAUAGGAUC&GAUCCUAUAUUUAUUUAAAUA	2	0.950805232734839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN8013_c0_g2_2848_TPlot.pdf
TRINITY_DN8013_c0_g2:2849	si_s480	TRINITY_DN8013_c0_g2	2838	2858	2849	-25.00	-16.90	0.676	7	1-13,2858-2846;15-17,2844-2842	14-14,2845-2845[SIL];18-21,2841-2838[UP3]	....(((.(((((((((((((&))))))))))))).)))....	CCUGGAACAGAUAUAGGAUCU&GGAUCCUAUAUUUAUUUAAAU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN8013_c0_g2_2849_TPlot.pdf
TRINITY_DN8013_c0_g2:2852	si_s477	TRINITY_DN8013_c0_g2	2841	2861	2852	-27.10	-19.40	0.715867158671587	7	3-16,2859-2846;18-20,2844-2842	1-2,2861-2860[UP5];17-17,2845-2845[SIL];21-21,2841-2841[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	GGAACAGAUAUAGGAUCUGAU&AACGGAUCCUAUAUUUAUUUA	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s477_TRINITY_DN8013_c0_g2_2852_TPlot.pdf
TRINITY_DN8013_c0_g2:2927	si_a634	TRINITY_DN8013_c0_g2	2916	2936	2927	-26.40	-17.30	0.65530303030303	6.5	1-15,2936-2922	16-21,2921-2916[UP3]	......(((((((((((((((&)))))))))))))))......	UCCAUAAAGAAAAUCGACAUA&UAUGUCGAUUUUUUUGAGUAA	4	0.999999999990202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN8013_c0_g2_2927_TPlot.pdf
TRINITY_DN8013_c0_g2:2931	si_a630	TRINITY_DN8013_c0_g2	2920	2939	2931	-25.80	-18.60	0.72093023255814	4.5	1-2,2939-2938;4-19,2937-2922	3-3,x-x[BULq];20-21,2921-2920[UP3]	..((((((((((((((((-((&)).))))))))))))))))..	UAAAGAAAAUCGACAUAA-AC&GUAUUAUGUCGAUUUUUUUGA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN8013_c0_g2_2931_TPlot.pdf
TRINITY_DN8013_c0_g2:2932	si_a629	TRINITY_DN8013_c0_g2	2921	2940	2932	-26.30	-18.70	0.711026615969582	4.5	2-3,2939-2938;5-20,2937-2922	1-1,2940-2940[UP5];4-4,x-x[BULq];21-21,2921-2921[UP3]	.((((((((((((((((-((.&.)).)))))))))))))))).	AAAGAAAAUCGACAUAA-ACA&CGUAUUAUGUCGAUUUUUUUG	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN8013_c0_g2_2932_TPlot.pdf
TRINITY_DN8013_c0_g3:4206	si_a216	TRINITY_DN8013_c0_g3	4196	4215	4206	-28.30	-19.00	0.671378091872792	7.5	1-4,4215-4212;7-15,4209-4201;17-21,4200-4196	5-6,4211-4210[SIL];16-16,x-x[BULq]	(((((-(((((((((..((((&))))..))))))))).)))))	GAAGC-UGAGUUUGAAGGGUC&GACUAAUUAAACUCAUGUUUC	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a216_TRINITY_DN8013_c0_g3_4206_TPlot.pdf
TRINITY_DN8013_c0_g4:1020	si_a792	TRINITY_DN8013_c0_g4	1009	1029	1020	-27.60	-19.70	0.713768115942029	4	1-12,1029-1018;15-20,1015-1010	13-14,1017-1016[SIL];21-21,1009-1009[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	GGGAUUGAUAAAUAGAAAAGU&AUUUUUCUAUUUUCCAAUCCG	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN8013_c0_g4_1020_TPlot.pdf
TRINITY_DN8013_c0_g4:1021	si_a791	TRINITY_DN8013_c0_g4	1010	1030	1021	-26.50	-19.10	0.720754716981132	4	2-13,1029-1018;16-21,1015-1010	1-1,1030-1030[UP5];14-15,1017-1016[SIL]	((((((..((((((((((((.&.))))))))))))..))))))	GGAUUGAUAAAUAGAAAAGUC&UAUUUUUCUAUUUUCCAAUCC	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN8013_c0_g4_1021_TPlot.pdf
TRINITY_DN8013_c0_g4:133	si_a321	TRINITY_DN8013_c0_g4	121	142	133	-26.70	-18.40	0.689138576779026	9.5	3-7,140-136;9-15,134-128;16-21,126-121	1-2,142-141[UP5];8-8,135-135[SIL];x-x,127-127[BULt]	((((((.(((((((.(((((..&..))))).)))))))-))))))	GGAAUAGGAAGGAUGGUGGAGU&UAUCCAUGAUUUUUU-UAUUCC	3	0.998040584778469	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN8013_c0_g4_133_TPlot.pdf
TRINITY_DN8013_c0_g4:841	si_a7	TRINITY_DN8013_c0_g4	829	850	841	-29.10	-22.20	0.762886597938144	5.5	1-13,850-838;14-19,836-831	x-x,837-837[BULt];20-21,830-829[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UUGUAGGCUUUUCUUUUCAGUU&AAUUGAAGAGAAA-GCCUAUUU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN8013_c0_g4_841_TPlot.pdf
TRINITY_DN8013_c0_g4:844	si_a4	TRINITY_DN8013_c0_g4	832	853	844	-31.60	-22.40	0.708860759493671	6	3-16,851-838;17-21,836-832	1-2,853-852[UP5];x-x,837-837[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	UAGGCUUUUCUUUUCAGUUUAU&UGAAAUUGAAGAGAAA-GCCUA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a4_TRINITY_DN8013_c0_g4_844_TPlot.pdf
TRINITY_DN8014_c0_g1:1677	si_s76	TRINITY_DN8014_c0_g1	1666	1687	1677	-23.60	-15.82	0.670338983050847	13	1-6,1687-1682;10-20,1677-1667	7-9,1681-1678[AILt];21-21,1666-1666[UP3]	.(((((((((((....((((((&))))))-...))))))))))).	CAGGGAGGAAAGUAUUGGAGAU&AUUUUU-UUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8014_c0_g1_1677_TPlot.pdf
TRINITY_DN8014_c0_g1:1723	si_a405	TRINITY_DN8014_c0_g1	1712	1733	1723	-19.80	-14.00	0.707070707070707	8.5	2-9,1732-1725;10-20,1723-1713	1-1,1733-1733[UP5];x-x,1724-1724[BULt];21-21,1712-1712[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	AUGGAUGUAGAUGAAGACAAUG&AAUUGUUUU-GUUUAUAUUUAA	4	0.999999999997275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8014_c0_g1_1723_TPlot.pdf
TRINITY_DN8018_c0_g1:1841	si_a415	TRINITY_DN8018_c0_g1	1830	1850	1841	-18.10	-12.60	0.696132596685083	9	5-20,1846-1831	1-4,1850-1847[UP5];21-21,1830-1830[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUGUGUUUAUUUAAAUACUUG&UUUAUAUUUAAAUAAAUAUAG	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN8018_c0_g1_1841_TPlot.pdf
TRINITY_DN801_c0_g1:100	si_s22	TRINITY_DN801_c0_g1	90	109	100	-26.70	-18.30	0.685393258426966	5	1-9,109-101;11-14,99-96;16-19,95-92	10-10,100-100[SIL];15-15,x-x[BULq];20-21,91-90[UP3]	..((((-((((.(((((((((&))))))))).)))).))))..	AAUUAG-UGCAUUCAAUAUAG&CUAUAUUGAUUGCAACUAAAU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN801_c0_g1_100_TPlot.pdf
TRINITY_DN801_c0_g1:101	si_s21	TRINITY_DN801_c0_g1	91	110	101	-27.40	-20.10	0.733576642335766	4	1-10,110-101;12-15,99-96;17-20,95-92	11-11,100-100[SIL];16-16,x-x[BULq];21-21,91-91[UP3]	.((((-((((.((((((((((&)))))))))).)))).)))).	AUUAG-UGCAUUCAAUAUAGU&ACUAUAUUGAUUGCAACUAAA	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN801_c0_g1_101_TPlot.pdf
TRINITY_DN801_c0_g1:103	si_s19	TRINITY_DN801_c0_g1	93	112	103	-27.80	-20.40	0.733812949640288	3	2-12,111-101;14-17,99-96;19-21,95-93	1-1,112-112[UP5];13-13,100-100[SIL];18-18,x-x[BULq]	(((-((((.(((((((((((.&.))))))))))).)))).)))	UAG-UGCAUUCAAUAUAGUAU&UUACUAUAUUGAUUGCAACUA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s19_TRINITY_DN801_c0_g1_103_TPlot.pdf
TRINITY_DN801_c0_g1:104	si_s18	TRINITY_DN801_c0_g1	94	113	104	-27.50	-18.90	0.687272727272727	5	3-13,111-101;15-18,99-96;20-21,95-94	1-2,113-112[UP5];14-14,100-100[SIL];19-19,x-x[BULq]	((-((((.(((((((((((..&..))))))))))).)))).))	AG-UGCAUUCAAUAUAGUAUU&AUUACUAUAUUGAUUGCAACU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN801_c0_g1_104_TPlot.pdf
TRINITY_DN801_c0_g1:105	si_s17	TRINITY_DN801_c0_g1	94	114	105	-27.20	-18.70	0.6875	8	4-14,111-101;16-19,99-96	1-3,114-112[UP5];15-15,100-100[SIL];20-21,95-94[UP3]	..((((.(((((((((((...&...))))))))))).))))..	AGUGCAUUCAAUAUAGUAUUU&UAUUACUAUAUUGAUUGCAAC	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN801_c0_g1_105_TPlot.pdf
TRINITY_DN801_c0_g1:106	si_s16	TRINITY_DN801_c0_g1	95	115	106	-25.60	-18.70	0.73046875	9	5-15,111-101;17-20,99-96	1-4,115-112[UP5];16-16,100-100[SIL];21-21,95-95[UP3]	.((((.(((((((((((....&....))))))))))).)))).	GUGCAUUCAAUAUAGUAUUUU&UUAUUACUAUAUUGAUUGCAA	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s16_TRINITY_DN801_c0_g1_106_TPlot.pdf
TRINITY_DN801_c0_g1:108	si_s14	TRINITY_DN801_c0_g1	97	117	108	-25.30	-17.10	0.675889328063241	12	7-17,111-101;19-21,99-97	1-6,117-112[UP5];18-18,100-100[SIL]	(((.(((((((((((......&......))))))))))).)))	GCAUUCAAUAUAGUAUUUUAU&UAUUAUUACUAUAUUGAUUGC	2	0.932849190213539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN801_c0_g1_108_TPlot.pdf
TRINITY_DN801_c0_g1:148	si_s797	TRINITY_DN801_c0_g1	137	158	148	-30.00	-21.52	0.717333333333333	10.5	1-7,158-152;11-21,147-137	8-10,151-148[AILt]	(((((((((((....(((((((&)))))))-...)))))))))))	UGAUGAAGGUAUACUUACGGGC&GCUCGUA-UUUUAUCUUCGUUA	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN801_c0_g1_148_TPlot.pdf
TRINITY_DN801_c0_g1:149	si_s796	TRINITY_DN801_c0_g1	138	159	149	-30.30	-21.52	0.71023102310231	10.5	1-8,159-152;12-21,147-138	9-11,151-148[AILt]	((((((((((....((((((((&))))))))-...))))))))))	GAUGAAGGUAUACUUACGGGCU&AGCUCGUA-UUUUAUCUUCGUU	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN801_c0_g1_149_TPlot.pdf
TRINITY_DN801_c0_g1:150	si_s795	TRINITY_DN801_c0_g1	139	160	150	-30.30	-21.32	0.703630363036304	10	1-9,160-152;13-21,147-139	10-12,151-148[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	AUGAAGGUAUACUUACGGGCUU&AAGCUCGUA-UUUUAUCUUCGU	2	0.898742791982841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN801_c0_g1_150_TPlot.pdf
TRINITY_DN801_c0_g1:2067	si_s810	TRINITY_DN801_c0_g1	2056	2076	2067	-27.90	-18.90	0.67741935483871	12	4-17,2073-2060	1-3,2076-2074[UP5];18-21,2059-2056[UP3]	....((((((((((((((...&...))))))))))))))....	CUUCAGGAGGAGGUGACGUGU&CUUCGUUACCUUUUCUUAAUA	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN801_c0_g1_2067_TPlot.pdf
TRINITY_DN801_c0_g1:2256	si_s891	TRINITY_DN801_c0_g1	2245	2265	2256	-29.60	-21.20	0.716216216216216	12.5	5-11,2261-2255;13-19,2253-2247	1-4,2265-2262[UP5];12-12,2254-2254[SIL];20-21,2246-2245[UP3]	..(((((((.(((((((....&....))))))).)))))))..	ACGGAGAGACGGCCUAUGCAC&AUAAAUAGGCUUUCUCUUCAA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN801_c0_g1_2256_TPlot.pdf
TRINITY_DN801_c0_g1:2258	si_s889	TRINITY_DN801_c0_g1	2247	2267	2258	-28.80	-20.80	0.722222222222222	13	7-13,2261-2255;15-21,2253-2247	1-6,2267-2262[UP5];14-14,2254-2254[SIL]	(((((((.(((((((......&......))))))).)))))))	GGAGAGACGGCCUAUGCACAU&AAAUAAAUAGGCUUUCUCUUC	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN801_c0_g1_2258_TPlot.pdf
TRINITY_DN801_c0_g1:2411	si_a637	TRINITY_DN801_c0_g1	2399	2420	2411	-25.80	-20.10	0.779069767441861	6	1-14,2420-2407;15-21,2405-2399	x-x,2406-2406[BULt]	(((((((.((((((((((((((&))))))))))))))-)))))))	GUAUUACAUUAGAGAAGUUGAC&GUCGAUUUUUUUGA-GUAAUAU	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN801_c0_g1_2411_TPlot.pdf
TRINITY_DN801_c0_g1:2412	si_a636	TRINITY_DN801_c0_g1	2400	2421	2412	-26.30	-18.90	0.718631178707224	6.5	2-15,2420-2407;16-21,2405-2400	1-1,2421-2421[UP5];x-x,2406-2406[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	UAUUACAUUAGAGAAGUUGACG&UGUCGAUUUUUUUGA-GUAAUA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN801_c0_g1_2412_TPlot.pdf
TRINITY_DN801_c0_g1:2413	si_a635	TRINITY_DN801_c0_g1	2401	2422	2413	-26.10	-17.50	0.670498084291188	8	3-16,2420-2407;17-21,2405-2401	1-2,2422-2421[UP5];x-x,2406-2406[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AUUACAUUAGAGAAGUUGACGC&AUGUCGAUUUUUUUGA-GUAAU	4	0.999999998893116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN801_c0_g1_2413_TPlot.pdf
TRINITY_DN801_c0_g1:2713	si_s797	TRINITY_DN801_c0_g1	2702	2722	2713	-30.00	-19.90	0.663333333333333	8	1-5,2722-2718;7-11,2716-2712;13-18,2710-2705	6-6,2717-2717[SIL];12-12,2711-2711[SIL];19-21,2704-2702[UP3]	...((((((.(((((.(((((&))))).))))).))))))...	GACCGAAGAAGAAAUCCGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.999999843271129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN801_c0_g1_2713_TPlot.pdf
TRINITY_DN801_c0_g1:2714	si_s796	TRINITY_DN801_c0_g1	2703	2723	2714	-30.30	-20.00	0.66006600660066	7	2-6,2722-2718;8-12,2716-2712;14-19,2710-2705	1-1,2723-2723[UP5];7-7,2717-2717[SIL];13-13,2711-2711[SIL];20-21,2704-2703[UP3]	..((((((.(((((.(((((.&.))))).))))).))))))..	ACCGAAGAAGAAAUCCGAGCA&AGCUCGUAUUUUAUCUUCGUU	2	0.999824886012476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN801_c0_g1_2714_TPlot.pdf
TRINITY_DN801_c0_g1:2715	si_s795	TRINITY_DN801_c0_g1	2704	2724	2715	-30.30	-20.00	0.66006600660066	7.5	3-7,2722-2718;9-13,2716-2712;15-20,2710-2705	1-2,2724-2723[UP5];8-8,2717-2717[SIL];14-14,2711-2711[SIL];21-21,2704-2704[UP3]	.((((((.(((((.(((((..&..))))).))))).)))))).	CCGAAGAAGAAAUCCGAGCAA&AAGCUCGUAUUUUAUCUUCGU	2	0.999190583655494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN801_c0_g1_2715_TPlot.pdf
TRINITY_DN801_c0_g1:2834	si_a144	TRINITY_DN801_c0_g1	2824	2843	2834	-27.40	-18.30	0.667883211678832	11.5	5-17,2839-2827;20-21,2825-2824	1-4,2843-2840[UP5];18-19,2826-2826[AILq]	((.-(((((((((((((....&....)))))))))))))..))	CCG-AAGACGACGACGAAGAA&UUAAUCGUUGUUGUUUUAAGG	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN801_c0_g1_2834_TPlot.pdf
TRINITY_DN801_c0_g1:3146	si_a178	TRINITY_DN801_c0_g1	3128	3155	3146	-32.90	-23.40	0.711246200607903	10	1-13,3155-3143;14-19,3136-3131;20-21,3129-3128	x-x,3142-3137[BULt];x-x,3130-3130[BULt]	((.((((((......(((((((((((((&)))))))))))))------))))))-))	GGAAGAGAUCAAAAAGUUGUCUAGAUGG&CCGUCUAGAUAAU------AUCUUU-CC	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN801_c0_g1_3146_TPlot.pdf
TRINITY_DN801_c0_g1:3153	si_a171	TRINITY_DN801_c0_g1	3142	3162	3153	-32.10	-21.90	0.682242990654206	14	7-20,3156-3143	1-6,3162-3157[UP5];21-21,3142-3142[UP3]	.((((((((((((((......&......)))))))))))))).	AGUUGUCUAGAUGGGAAGUCA&UAUUCACCCGUCUAGAUAAUA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN801_c0_g1_3153_TPlot.pdf
TRINITY_DN801_c0_g1:3367	si_a497	TRINITY_DN801_c0_g1	3357	3376	3367	-32.00	-21.40	0.66875	10	3-10,3374-3367;12-18,3366-3360	1-2,3376-3375[UP5];11-11,x-x[BULq];19-21,3359-3357[UP3]	...(((((((-((((((((..&..)))))))).)))))))...	UCAGAAGACG-AGAGCGACGA&AUGUCGUUUUUCGUCUUCCUU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN801_c0_g1_3367_TPlot.pdf
TRINITY_DN801_c0_g1:3369	si_a495	TRINITY_DN801_c0_g1	3359	3378	3369	-31.90	-21.40	0.670846394984326	11	5-12,3374-3367;14-20,3366-3360	1-4,3378-3375[UP5];13-13,x-x[BULq];21-21,3359-3359[UP3]	.(((((((-((((((((....&....)))))))).))))))).	AGAAGACG-AGAGCGACGAAG&AUAUGUCGUUUUUCGUCUUCC	3	0.999999991154675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN801_c0_g1_3369_TPlot.pdf
TRINITY_DN801_c0_g1:3458	si_s77	TRINITY_DN801_c0_g1	3447	3467	3458	-25.50	-17.90	0.701960784313725	8.5	1-5,3467-3463;7-19,3461-3449	6-6,3462-3462[SIL];20-21,3448-3447[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UUGGAAAGGGAAGAGCAGGAA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN801_c0_g1_3458_TPlot.pdf
TRINITY_DN801_c0_g1:3460	si_s75	TRINITY_DN801_c0_g1	3449	3469	3460	-24.00	-17.90	0.745833333333333	9	3-7,3467-3463;9-21,3461-3449	1-2,3469-3468[UP5];8-8,3462-3462[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GGAAAGGGAAGAGCAGGAACG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999996362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN801_c0_g1_3460_TPlot.pdf
TRINITY_DN801_c0_g1:3461	si_s74	TRINITY_DN801_c0_g1	3450	3470	3461	-25.00	-16.80	0.672	10.5	4-8,3467-3463;10-21,3461-3450	1-3,3470-3468[UP5];9-9,3462-3462[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAAGGGAAGAGCAGGAACGA&CUAUUUUUUUUCUUUCCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN801_c0_g1_3461_TPlot.pdf
TRINITY_DN801_c0_g1:3462	si_a499	TRINITY_DN801_c0_g1	3451	3471	3462	-35.20	-23.20	0.659090909090909	8.5	1-9,3471-3463;12-19,3460-3453	10-11,3462-3461[SIL];20-21,3452-3451[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AAAGGGAAGAGCAGGAACGAC&GUCGUUUUUCGUCUUCCUUGG	2	0.999999851024798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN801_c0_g1_3462_TPlot.pdf
TRINITY_DN801_c0_g1:3464	si_a497	TRINITY_DN801_c0_g1	3453	3473	3464	-32.00	-23.80	0.74375	6.5	2-11,3472-3463;14-21,3460-3453	1-1,3473-3473[UP5];12-13,3462-3461[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	AGGGAAGAGCAGGAACGACAG&AUGUCGUUUUUCGUCUUCCUU	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN801_c0_g1_3464_TPlot.pdf
TRINITY_DN801_c0_g1:3465	si_a496	TRINITY_DN801_c0_g1	3454	3474	3465	-32.40	-23.00	0.709876543209877	7.5	3-12,3472-3463;15-21,3460-3454	1-2,3474-3473[UP5];13-14,3462-3461[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GGGAAGAGCAGGAACGACAGG&UAUGUCGUUUUUCGUCUUCCU	2	0.993200496484932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN801_c0_g1_3465_TPlot.pdf
TRINITY_DN801_c0_g1:3466	si_a495	TRINITY_DN801_c0_g1	3455	3475	3466	-31.90	-21.90	0.686520376175549	9	4-13,3472-3463;16-21,3460-3455	1-3,3475-3473[UP5];14-15,3462-3461[SIL]	((((((..((((((((((...&...))))))))))..))))))	GGAAGAGCAGGAACGACAGGA&AUAUGUCGUUUUUCGUCUUCC	3	0.999993758972638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN801_c0_g1_3466_TPlot.pdf
TRINITY_DN801_c0_g1:3523	si_s73	TRINITY_DN801_c0_g1	3512	3532	3523	-24.00	-19.40	0.808333333333333	3	1-12,3532-3521;14-21,3519-3512	13-13,3520-3520[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AAAGGAAAAGAAAAAGAUAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.996254895103595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN801_c0_g1_3523_TPlot.pdf
TRINITY_DN801_c0_g1:5724	si_a713	TRINITY_DN801_c0_g1	5713	5733	5724	-29.60	-21.24	0.717567567567567	11.5	1-5,5733-5729;11-20,5723-5714	6-10,5728-5724[SIL];21-21,5713-5713[UP3]	.((((((((((.....(((((&))))).....)))))))))).	AGAGUGACGAUGAGGGUGGAA&UUCCAAAAUAAUCGUUACUCG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a713_TRINITY_DN801_c0_g1_5724_TPlot.pdf
TRINITY_DN801_c0_g1:5868	si_s432	TRINITY_DN801_c0_g1	5857	5877	5868	-21.30	-17.20	0.807511737089202	3	2-14,5876-5864;17-21,5861-5857	1-1,5877-5877[UP5];15-16,5863-5862[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	UAUAAGUUGUAAUUAUUGUUC&UAACAAUAAUUACAUAUUAUA	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN801_c0_g1_5868_TPlot.pdf
TRINITY_DN801_c0_g1:5869	si_s431	TRINITY_DN801_c0_g1	5858	5878	5869	-21.10	-15.80	0.748815165876777	5	3-15,5876-5864;18-21,5861-5858	1-2,5878-5877[UP5];16-17,5863-5862[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AUAAGUUGUAAUUAUUGUUCU&AUAACAAUAAUUACAUAUUAU	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN801_c0_g1_5869_TPlot.pdf
TRINITY_DN801_c0_g1:920	si_a319	TRINITY_DN801_c0_g1	909	929	920	-22.40	-14.80	0.660714285714286	11	5-13,925-917;15-19,915-911	1-4,929-926[UP5];14-14,916-916[SIL];20-21,910-909[UP3]	..(((((.(((((((((....&....))))))))).)))))..	CCUGAAAUGAUCAUGGAAGAU&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN801_c0_g1_920_TPlot.pdf
TRINITY_DN8023_c0_g1:1190	si_s776	TRINITY_DN8023_c0_g1	1179	1199	1190	-25.10	-17.50	0.697211155378486	7.5	1-7,1199-1193;9-17,1191-1183	8-8,1192-1192[SIL];18-21,1182-1179[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AAUCUUUGUAGCAUUAGUAGU&AUUACUAUUGCUAUAAAACAA	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s776_TRINITY_DN8023_c0_g1_1190_TPlot.pdf
TRINITY_DN8023_c0_g1:1191	si_s775	TRINITY_DN8023_c0_g1	1180	1200	1191	-25.00	-17.80	0.712	7.5	2-8,1199-1193;10-18,1191-1183	1-1,1200-1200[UP5];9-9,1192-1192[SIL];19-21,1182-1180[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	AUCUUUGUAGCAUUAGUAGUG&AAUUACUAUUGCUAUAAAACA	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN8023_c0_g1_1191_TPlot.pdf
TRINITY_DN8023_c0_g1:1192	si_s774	TRINITY_DN8023_c0_g1	1181	1201	1192	-24.70	-17.80	0.720647773279352	8.5	3-9,1199-1193;11-19,1191-1183	1-2,1201-1200[UP5];10-10,1192-1192[SIL];20-21,1182-1181[UP3]	..(((((((((.(((((((..&..))))))).)))))))))..	UCUUUGUAGCAUUAGUAGUGU&UAAUUACUAUUGCUAUAAAAC	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN8023_c0_g1_1192_TPlot.pdf
TRINITY_DN8023_c0_g1:1193	si_s773	TRINITY_DN8023_c0_g1	1182	1202	1193	-23.10	-17.80	0.770562770562771	9.5	4-10,1199-1193;12-20,1191-1183	1-3,1202-1200[UP5];11-11,1192-1192[SIL];21-21,1182-1182[UP3]	.(((((((((.(((((((...&...))))))).))))))))).	CUUUGUAGCAUUAGUAGUGUC&UUAAUUACUAUUGCUAUAAAA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN8023_c0_g1_1193_TPlot.pdf
TRINITY_DN8023_c0_g1:1194	si_s772	TRINITY_DN8023_c0_g1	1183	1203	1194	-23.20	-17.50	0.754310344827586	10.5	5-11,1199-1193;13-21,1191-1183	1-4,1203-1200[UP5];12-12,1192-1192[SIL]	(((((((((.(((((((....&....))))))).)))))))))	UUUGUAGCAUUAGUAGUGUCU&AUUAAUUACUAUUGCUAUAAA	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN8023_c0_g1_1194_TPlot.pdf
TRINITY_DN8023_c0_g1:1195	si_s771	TRINITY_DN8023_c0_g1	1184	1202	1195	-25.20	-17.00	0.674603174603175	7.5	1-3,1202-1200;6-12,1199-1193;14-21,1191-1184	4-5,x-x[BULq];13-13,1192-1192[SIL]	((((((((.(((((((--(((&)))..))))))).))))))))	UUGUAGCAUUAGUAGU--GUC&GAUUAAUUACUAUUGCUAUAA	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN8023_c0_g1_1195_TPlot.pdf
TRINITY_DN8033_c0_g1:2824	si_a49	TRINITY_DN8033_c0_g1	2811	2833	2824	-42.20	-27.80	0.658767772511848	7	1-13,2833-2821;16-18,2818-2816;19-21,2813-2811	14-15,2820-2819[SIL];x-x,2815-2814[BULt]	(((..(((..(((((((((((((&)))))))))))))..)))--)))	AGCCAGAGAGGACUUCUGGGCCU&AGGUCUAGGAGUCGACUC--GCU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a49_TRINITY_DN8033_c0_g1_2824_TPlot.pdf
TRINITY_DN8034_c0_g1:546	si_a867	TRINITY_DN8034_c0_g1	535	555	546	-24.10	-17.70	0.734439834024896	4.5	2-12,554-544;14-15,542-541;17-21,539-535	1-1,555-555[UP5];13-13,543-543[SIL];16-16,540-540[SIL]	(((((.((.(((((((((((.&.))))))))))).)).)))))	GCAGCCAAUUCUUUAAUGAUG&AAUUAUUAAAGAUUUAGUUGC	0	0.0217725498660479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a867_TRINITY_DN8034_c0_g1_546_TPlot.pdf
TRINITY_DN8039_c0_g1:649	si_a555	TRINITY_DN8039_c0_g1	637	658	649	-33.70	-23.20	0.688427299703264	6	1-14,658-645;15-18,643-640	x-x,644-644[BULt];19-21,639-637[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	CUGUGGGCGAGAUGAAGAAAUG&UAUUUCUUUAUCUC-CCCGUGA	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN8039_c0_g1_649_TPlot.pdf
TRINITY_DN8039_c0_g1:656	si_a548	TRINITY_DN8039_c0_g1	645	665	656	-27.20	-18.68	0.686764705882353	8.5	2-4,664-662;8-21,658-645	1-1,665-665[UP5];5-7,661-659[SIL]	((((((((((((((...(((.&.)))...))))))))))))))	GAGAUGAAGAAAUGUUGUGAU&UUCAAUCUAUUUCUUUAUCUC	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN8039_c0_g1_656_TPlot.pdf
TRINITY_DN803_c0_g1:366	si_a146	TRINITY_DN803_c0_g1	355	375	366	-29.70	-21.20	0.713804713804714	9.5	5-15,371-361;17-21,359-355	1-4,375-372[UP5];16-16,360-360[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GGCCUGGGAACAACAACAAUC&AAUCGUUGUUGUUUUAAGGUC	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN803_c0_g1_366_TPlot.pdf
TRINITY_DN803_c0_g1:367	si_a145	TRINITY_DN803_c0_g1	356	376	367	-28.10	-18.90	0.672597864768683	11.5	6-16,371-361;18-21,359-356	1-5,376-372[UP5];17-17,360-360[SIL]	((((.(((((((((((.....&.....))))))))))).))))	GCCUGGGAACAACAACAAUCU&UAAUCGUUGUUGUUUUAAGGU	2	0.993284599651729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN803_c0_g1_367_TPlot.pdf
TRINITY_DN803_c0_g1:3733	si_a328	TRINITY_DN803_c0_g1	3723	3741	3733	-30.10	-19.60	0.651162790697674	7.5	1-3,3741-3739;6-13,3737-3730;15-21,3729-3723	4-5,3738-3738[AILq];14-14,x-x[BULq]	(((((((-((((((((.-(((&)))..)))))))).)))))))	GGGACGA-GAAUAAGAU-GUC&GAUUUUUUUAUUCCUUGUCCC	4	0.999999998292486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN803_c0_g1_3733_TPlot.pdf
TRINITY_DN8041_c0_g1:920	si_a181	TRINITY_DN8041_c0_g1	910	929	920	-32.00	-20.80	0.65	7	1-6,929-924;8-11,922-919;13-20,918-911	7-7,923-923[SIL];12-12,x-x[BULq];21-21,910-910[UP3]	.((((((((-((((.((((((&)))))).)))).)))))))).	UGGGGGAAG-UAUUCUCUGGA&UCUAGAUAAUAUCUUUCCCUG	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN8041_c0_g1_920_TPlot.pdf
TRINITY_DN8043_c0_g1:1144	si_a227	TRINITY_DN8043_c0_g1	1131	1154	1144	-26.80	-18.40	0.686567164179104	7.5	1-5,1154-1150;6-14,1148-1140;15-20,1137-1132	x-x,1149-1149[BULt];x-x,1139-1138[BULt];21-21,1131-1131[UP3]	.((((((..(((((((((.(((((&)))))-)))))))))--)))))).	UGUUGGUAAUGUGGAAACGAUGAG&CUCAU-GUUUCUAUA--AUCAAUU	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN8043_c0_g1_1144_TPlot.pdf
TRINITY_DN8043_c0_g1:1186	si_s248	TRINITY_DN8043_c0_g1	1175	1195	1186	-31.90	-21.60	0.677115987460815	10	1-15,1195-1181	16-21,1180-1175[UP3]	......(((((((((((((((&)))))))))))))))......	AUAAAGGUUGGGGAGUGUCUA&UAGGCAUUUCCCGAUAUAUUA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN8043_c0_g1_1186_TPlot.pdf
TRINITY_DN8043_c0_g1:1188	si_s246	TRINITY_DN8043_c0_g1	1177	1197	1188	-31.70	-21.60	0.681388012618297	11	3-17,1195-1181	1-2,1197-1196[UP5];18-21,1180-1177[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAAGGUUGGGGAGUGUCUACC&AAUAGGCAUUUCCCGAUAUAU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s246_TRINITY_DN8043_c0_g1_1188_TPlot.pdf
TRINITY_DN8043_c0_g1:1189	si_s245	TRINITY_DN8043_c0_g1	1178	1198	1189	-33.20	-21.60	0.650602409638554	12	4-18,1195-1181	1-3,1198-1196[UP5];19-21,1180-1178[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAGGUUGGGGAGUGUCUACCA&CAAUAGGCAUUUCCCGAUAUA	3	0.986318333373906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s245_TRINITY_DN8043_c0_g1_1189_TPlot.pdf
TRINITY_DN8043_c0_g1:1191	si_s243	TRINITY_DN8043_c0_g1	1180	1206	1191	-33.80	-22.40	0.662721893491124	18.5	1-6,1206-1201;7-20,1194-1181	x-x,1200-1195[BULt];21-21,1180-1180[UP3]	.((((((((((((((......((((((&))))))------)))))))))))))).	GGUUGGGGAGUGUCUACCAUUGUUGGU&AUCAAU------AGGCAUUUCCCGAUA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s243_TRINITY_DN8043_c0_g1_1191_TPlot.pdf
TRINITY_DN8043_c0_g1:1192	si_s242	TRINITY_DN8043_c0_g1	1181	1207	1192	-33.40	-22.30	0.667664670658683	18	2-7,1206-1201;8-21,1194-1181	1-1,1207-1207[UP5];x-x,1200-1195[BULt]	((((((((((((((......((((((.&.))))))------))))))))))))))	GUUGGGGAGUGUCUACCAUUGUUGGUG&AAUCAAU------AGGCAUUUCCCGAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s242_TRINITY_DN8043_c0_g1_1192_TPlot.pdf
TRINITY_DN8043_c0_g1:1215	si_s316	TRINITY_DN8043_c0_g1	1204	1226	1215	-31.50	-20.80	0.66031746031746	10.5	1-8,1226-1219;9-12,1216-1213;14-19,1211-1206	x-x,1218-1217[BULt];13-13,1212-1212[SIL];20-21,1205-1204[UP3]	..((((((.((((..((((((((&))))))))--)))).))))))..	GGUGUAGCUGGAGCCGGACAGGA&UUCUGUCC--UUCUUGUUACAAA	4	0.99999745360528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN8043_c0_g1_1215_TPlot.pdf
TRINITY_DN8043_c0_g1:926	si_s30	TRINITY_DN8043_c0_g1	915	935	926	-24.80	-16.20	0.653225806451613	7	1-6,935-930;8-16,928-920;18-20,918-916	7-7,929-929[SIL];17-17,919-919[SIL];21-21,915-915[UP3]	.(((.(((((((((.((((((&)))))).))))))))).))).	AGUUUGGGGUUUAGGUGCAGU&AUUGCAACUAAAUCUUUAAUA	3	0.995225086020418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN8043_c0_g1_926_TPlot.pdf
TRINITY_DN8046_c0_g1:1474	si_s205	TRINITY_DN8046_c0_g1	1463	1491	1474	-34.90	-23.00	0.659025787965616	20.5	1-4,1491-1488;6-8,1486-1484;9-20,1475-1464	5-5,1487-1487[SIL];x-x,1483-1476[BULt];21-21,1463-1463[UP3]	.((((((((((((........(((.((((&)))).)))--------)))))))))))).	ACGAACACGACUGUAUGCAACGUAGGUUC&GAAUGUAC--------CAGUUGUGUUCGA	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s205_TRINITY_DN8046_c0_g1_1474_TPlot.pdf
TRINITY_DN8046_c0_g1:2740	si_s804	TRINITY_DN8046_c0_g1	2729	2749	2740	-27.90	-18.30	0.655913978494624	7.5	4-13,2746-2737;15-19,2736-2732;20-21,2730-2729	1-3,2749-2747[UP5];14-14,x-x[BULq];x-x,2731-2731[BULt]	((.(((((-((((((((((...&...)))))))))).)))))-))	GACAGAGG-AACGAAGAUAUCC&UUUUAUCUUCGUUACCUUU-UC	4	0.999999999999592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN8046_c0_g1_2740_TPlot.pdf
TRINITY_DN8046_c0_g1:2781	si_a539	TRINITY_DN8046_c0_g1	2769	2790	2781	-32.70	-22.60	0.691131498470948	6.5	2-7,2789-2784;9-16,2782-2775;17-21,2773-2769	1-1,2790-2790[UP5];8-8,2783-2783[SIL];x-x,2774-2774[BULt]	(((((.((((((((.((((((.&.)))))).))))))))-)))))	GGAUGUGAUUGAACGGAUUGCA&AGCGAUCGGUUCAAUC-UAUUU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN8046_c0_g1_2781_TPlot.pdf
TRINITY_DN8046_c1_g1:87	si_a784	TRINITY_DN8046_c1_g1	76	96	87	-24.70	-16.20	0.65587044534413	9	2-12,95-85;14-16,83-81	1-1,96-96[UP5];13-13,84-84[SIL];17-21,80-76[UP3]	.....(((.(((((((((((.&.))))))))))).))).....	GAGCAAGACAAAUGGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	2	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8046_c1_g1_87_TPlot.pdf
TRINITY_DN8046_c1_g1:88	si_a783	TRINITY_DN8046_c1_g1	77	97	88	-24.70	-16.20	0.65587044534413	10	3-13,95-85;15-17,83-81	1-2,97-96[UP5];14-14,84-84[SIL];18-21,80-77[UP3]	....(((.(((((((((((..&..))))))))))).)))....	AGCAAGACAAAUGGAGGAGGA&AACUCUUCUAUUUUUCUAUUU	2	0.99999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8046_c1_g1_88_TPlot.pdf
TRINITY_DN8046_c1_g1:96	si_s894	TRINITY_DN8046_c1_g1	85	106	96	-29.10	-19.20	0.65979381443299	8.5	3-6,104-101;7-16,99-90;18-21,88-85	1-2,106-105[UP5];x-x,100-100[BULt];17-17,89-89[SIL]	((((.((((((((((.((((..&..))))-)))))))))).))))	AAAUGGAGGAGGAAGACCUGCC&AAUAGG-CUUUCUCUUCAAUUU	4	0.999999993731687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN8046_c1_g1_96_TPlot.pdf
TRINITY_DN8056_c0_g1:2245	si_s6	TRINITY_DN8056_c0_g1	2235	2254	2245	-21.70	-15.00	0.691244239631336	7	1-11,2254-2244;13-18,2243-2238	12-12,x-x[BULq];19-21,2237-2235[UP3]	...((((((-(((((((((((&))))))))))).))))))...	GUAGGUGAU-AUGAGUAAUAU&AUAUUACUUAUUAUUACUAUA	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN8056_c0_g1_2245_TPlot.pdf
TRINITY_DN8065_c0_g1:1027	si_s488	TRINITY_DN8065_c0_g1	1016	1036	1027	-18.30	-12.10	0.66120218579235	11	6-19,1031-1018	1-5,1036-1032[UP5];20-21,1017-1016[UP3]	..((((((((((((((.....&.....))))))))))))))..	UGGUUUAUAUUUAAAUCUGGG&UAUUUAUUUAAAUAUAAACAA	4	0.999667621209284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN8065_c0_g1_1027_TPlot.pdf
TRINITY_DN8066_c2_g1:83	si_a120	TRINITY_DN8066_c2_g1	72	91	83	-30.50	-20.70	0.678688524590164	4.5	1-5,91-87;7-13,86-80;15-21,78-72	6-6,x-x[BULq];14-14,79-79[SIL]	(((((((.(((((((-(((((&))))).))))))).)))))))	UUAUUGCGAUAGAAC-AGCUC&GAGCUUGUUUUAUAGCAAUAG	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN8066_c2_g1_83_TPlot.pdf
TRINITY_DN8067_c0_g1:4150	si_s414	TRINITY_DN8067_c0_g1	4139	4158	4150	-24.90	-16.20	0.650602409638554	7	2-8,4157-4151;10-17,4150-4143	1-1,4158-4158[UP5];9-9,x-x[BULq];18-21,4142-4139[UP3]	....((((((((-(((((((.&.))))))).))))))))....	AUAGAUAGAAUA-GUCGUUUC&AAAACGACAUAUUCUAUAUAA	3	0.998666225740759	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN8067_c0_g1_4150_TPlot.pdf
TRINITY_DN8067_c0_g1:4151	si_s413	TRINITY_DN8067_c0_g1	4140	4159	4151	-24.80	-16.20	0.653225806451613	8	3-9,4157-4151;11-18,4150-4143	1-2,4159-4158[UP5];10-10,x-x[BULq];19-21,4142-4140[UP3]	...((((((((-(((((((..&..))))))).))))))))...	UAGAUAGAAUA-GUCGUUUCU&AAAAACGACAUAUUCUAUAUA	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN8067_c0_g1_4151_TPlot.pdf
TRINITY_DN8067_c0_g1:4251	si_a521	TRINITY_DN8067_c0_g1	4237	4260	4251	-42.50	-28.80	0.677647058823529	11	4-6,4257-4255;8-13,4253-4248;14-21,4244-4237	1-3,4260-4258[UP5];7-7,4254-4254[SIL];x-x,4247-4245[BULt]	((((((((...((((((.(((...&...))).))))))---))))))))	GCUCGCGUCUCGUCCGCGUUGGUU&AUGUAAGGCGGAC---ACGCGAGC	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a521_TRINITY_DN8067_c0_g1_4251_TPlot.pdf
TRINITY_DN806_c3_g1:674	si_a313	TRINITY_DN806_c3_g1	663	684	674	-28.70	-20.20	0.70383275261324	9.5	2-7,683-678;8-19,676-665	1-1,684-684[UP5];x-x,677-677[BULt];20-21,664-663[UP3]	..((((((((((((.((((((.&.))))))-))))))))))))..	UCAAUCGUGGGUGGUAUCCAGC&CUUGGAU-UUAUCCAUGAUUUU	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN806_c3_g1_674_TPlot.pdf
TRINITY_DN8073_c0_g1:1073	si_s813	TRINITY_DN8073_c0_g1	1062	1082	1073	-27.10	-18.50	0.682656826568266	10.5	1-14,1082-1069	15-21,1068-1062[UP3]	.......((((((((((((((&)))))))))))))).......	CUGAACGAGGAAGAGGUGAUG&CGUUACCUUUUCUUAAUAAUG	2	0.877959113206628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN8073_c0_g1_1073_TPlot.pdf
TRINITY_DN8073_c0_g1:1074	si_s812	TRINITY_DN8073_c0_g1	1063	1083	1074	-26.40	-18.70	0.708333333333333	10	1-15,1083-1069	16-21,1068-1063[UP3]	......(((((((((((((((&)))))))))))))))......	UGAACGAGGAAGAGGUGAUGG&UCGUUACCUUUUCUUAAUAAU	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN8073_c0_g1_1074_TPlot.pdf
TRINITY_DN8073_c0_g1:1076	si_s810	TRINITY_DN8073_c0_g1	1065	1085	1076	-27.90	-18.80	0.673835125448029	11.5	3-17,1083-1069	1-2,1085-1084[UP5];18-21,1068-1065[UP3]	....(((((((((((((((..&..)))))))))))))))....	AACGAGGAAGAGGUGAUGGCA&CUUCGUUACCUUUUCUUAAUA	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN8073_c0_g1_1076_TPlot.pdf
TRINITY_DN8073_c0_g1:1079	si_s807	TRINITY_DN8073_c0_g1	1068	1088	1079	-28.90	-18.80	0.650519031141869	14	6-20,1083-1069	1-5,1088-1084[UP5];21-21,1068-1068[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAGGAAGAGGUGAUGGCAAAA&UAUCUUCGUUACCUUUUCUUA	4	0.999999999999958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN8073_c0_g1_1079_TPlot.pdf
TRINITY_DN8073_c0_g1:2694	si_s479	TRINITY_DN8073_c0_g1	2683	2704	2694	-26.40	-18.10	0.685606060606061	9	1-3,2704-2702;4-15,2700-2689	x-x,2701-2701[BULt];16-21,2688-2683[UP3]	......((((((((((((.(((&)))-))))))))))))......	CAUUACUAAAUAUGGGAUACCG&CGG-AUCCUAUAUUUAUUUAAA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN8073_c0_g1_2694_TPlot.pdf
TRINITY_DN8073_c0_g1:3278	si_a553	TRINITY_DN8073_c0_g1	3267	3287	3278	-33.70	-22.70	0.673590504451039	7	1-3,3287-3285;5-11,3283-3277;13-19,3275-3269	4-4,3284-3284[SIL];12-12,3276-3276[SIL];20-21,3268-3267[UP3]	..(((((((.(((((((.(((&))).))))))).)))))))..	UGGGGGAGACAAAGGAAAAGA&UCUAUUUCUUUAUCUCCCCGU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN8073_c0_g1_3278_TPlot.pdf
TRINITY_DN8073_c0_g1:3312	si_a784	TRINITY_DN8073_c0_g1	3301	3321	3312	-24.70	-19.90	0.805668016194332	8	2-16,3320-3306	1-1,3321-3321[UP5];17-21,3305-3301[UP3]	.....(((((((((((((((.&.))))))))))))))).....	ACGUGAGAAGAAUGGAAGAGA&ACUCUUCUAUUUUUCUAUUUU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8073_c0_g1_3312_TPlot.pdf
TRINITY_DN8073_c0_g3:9	si_s53	TRINITY_DN8073_c0_g3	1	18	9	-31.20	-22.80	0.730769230769231	4	1-11,18-8;15-21,7-1	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	AAGUUGC---CUUGAAAUCCA&UGGAUUUCAAGUUAGCAACUU	0	0.0114408813395368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN8073_c0_g3_9_TPlot.pdf
TRINITY_DN8075_c0_g1:3978	si_a794	TRINITY_DN8075_c0_g1	3966	3988	3978	-28.60	-18.60	0.65034965034965	9.5	2-7,3987-3982;8-17,3980-3971;18-19,3969-3968	1-1,3988-3988[UP5];x-x,3981-3981[BULt];x-x,3970-3970[BULt];20-21,3967-3966[UP3]	..((.((((((((((.((((((.&.))))))-))))))))))-))..	CCCGCGGUUGGAAAGCUGGAGAU&UUUUCUA-UUUUCCAAUC-CGAA	2	0.999751875834929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN8075_c0_g1_3978_TPlot.pdf
TRINITY_DN8075_c0_g1:5160	si_s70	TRINITY_DN8075_c0_g1	5149	5169	5160	-25.80	-17.30	0.670542635658915	6	1-7,5169-5163;9-17,5161-5153;19-20,5151-5150	8-8,5162-5162[SIL];18-18,5152-5152[SIL];21-21,5149-5149[UP3]	.((.(((((((((.(((((((&))))))).))))))))).)).	UGAUGGAGAAAAGUUAGAAGU&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8075_c0_g1_5160_TPlot.pdf
TRINITY_DN8078_c0_g1:1964	si_a605	TRINITY_DN8078_c0_g1	1951	1973	1964	-32.20	-21.00	0.652173913043478	6.5	1-12,1973-1962;13-18,1960-1955;19-20,1953-1952	x-x,1961-1961[BULt];x-x,1954-1954[BULt];21-21,1951-1951[UP3]	.((.((((((.((((((((((((&))))))))))))-))))))-)).	UGUAUGAUUGUGAAUUGUGAAGA&UUUUCGCAAUUC-CAAUCG-ACU	3	0.991583415802269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a605_TRINITY_DN8078_c0_g1_1964_TPlot.pdf
TRINITY_DN8078_c0_g1:1965	si_a604	TRINITY_DN8078_c0_g1	1952	1974	1965	-31.60	-20.60	0.651898734177215	5.5	2-13,1973-1962;14-19,1960-1955;20-21,1953-1952	1-1,1974-1974[UP5];x-x,1961-1961[BULt];x-x,1954-1954[BULt]	((.((((((.((((((((((((.&.))))))))))))-))))))-))	GUAUGAUUGUGAAUUGUGAAGAG&AUUUUCGCAAUUC-CAAUCG-AC	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a604_TRINITY_DN8078_c0_g1_1965_TPlot.pdf
TRINITY_DN8078_c0_g1:1966	si_a603	TRINITY_DN8078_c0_g1	1954	1975	1966	-29.80	-20.20	0.677852348993289	8	3-14,1973-1962;15-19,1960-1956	1-2,1975-1974[UP5];x-x,1961-1961[BULt];20-21,1955-1954[UP3]	..(((((.((((((((((((..&..))))))))))))-)))))..	AUGAUUGUGAAUUGUGAAGAGA&AAUUUUCGCAAUUC-CAAUCGA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a603_TRINITY_DN8078_c0_g1_1966_TPlot.pdf
TRINITY_DN8079_c0_g1:116	si_s774	TRINITY_DN8079_c0_g1	106	125	116	-24.70	-17.10	0.692307692307692	6	1-10,125-116;12-13,114-113;15-21,112-106	11-11,115-115[SIL];14-14,x-x[BULq]	(((((((-((.((((((((((&)))))))))).)).)))))))	GUUUUGU-GCUGUAGUAGUUG&UAAUUACUAUUGCUAUAAAAC	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN8079_c0_g1_116_TPlot.pdf
TRINITY_DN807_c1_g2:459	si_a783	TRINITY_DN807_c1_g2	449	468	459	-24.70	-16.10	0.651821862348178	8.5	2-12,467-457;15-20,455-450	1-1,468-468[UP5];13-14,456-456[AILq];21-21,449-449[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	UGGUAGGC-AGUGGAGGAGUC&AACUCUUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN807_c1_g2_459_TPlot.pdf
TRINITY_DN807_c1_g2:462	si_s856	TRINITY_DN807_c1_g2	448	471	462	-43.30	-28.20	0.651270207852194	13.5	1-10,471-462;14-20,455-449	11-13,461-456[AILt];21-21,448-448[UP3]	.(((((((......((((((((((&))))))))))---...))))))).	AUGGUAGGCAGUGGAGGAGUCGGC&GUCGACUCCU---AGACCUACCGG	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s856_TRINITY_DN807_c1_g2_462_TPlot.pdf
TRINITY_DN807_c1_g2:463	si_s855	TRINITY_DN807_c1_g2	449	472	463	-41.60	-28.30	0.680288461538462	13	2-11,471-462;15-20,455-450	1-1,472-472[UP5];12-14,461-456[AILt];21-21,449-449[UP3]	.((((((......((((((((((.&.))))))))))---...)))))).	UGGUAGGCAGUGGAGGAGUCGGCA&AGUCGACUCCU---AGACCUACCG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s855_TRINITY_DN807_c1_g2_463_TPlot.pdf
TRINITY_DN807_c1_g2:464	si_s854	TRINITY_DN807_c1_g2	450	473	464	-42.10	-27.60	0.655581947743468	13	3-12,471-462;16-21,455-450	1-2,473-472[UP5];13-15,461-456[AILt]	((((((......((((((((((..&..))))))))))---...))))))	GGUAGGCAGUGGAGGAGUCGGCAA&GAGUCGACUCCU---AGACCUACC	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s854_TRINITY_DN807_c1_g2_464_TPlot.pdf
TRINITY_DN807_c1_g2:7826	si_a419	TRINITY_DN807_c1_g2	7815	7835	7826	-23.00	-16.40	0.71304347826087	11	6-21,7830-7815	1-5,7835-7831[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAUCUUAUGUUUGUUUUAUAU&UAUUUAAAUAAAUAUAGGAUC	3	0.589643870044722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a419_TRINITY_DN807_c1_g2_7826_TPlot.pdf
TRINITY_DN8081_c0_g1:1127	si_a493	TRINITY_DN8081_c0_g1	1116	1136	1127	-29.50	-19.80	0.671186440677966	10.5	4-7,1133-1130;9-21,1128-1116	1-3,1136-1134[UP5];8-8,1129-1129[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AGGACGAAAGGCGCCGUAGCA&GAAUAUGUCGUUUUUCGUCUU	4	0.999991909822843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN8081_c0_g1_1127_TPlot.pdf
TRINITY_DN8084_c1_g1:1492	si_s775	TRINITY_DN8084_c1_g1	1482	1501	1492	-25.00	-16.30	0.652	8	1-8,1501-1494;11-16,1491-1486;19-21,1484-1482	9-10,1493-1492[SIL];17-18,1485-1485[AILq]	(((.-((((((..((((((((&))))))))..))))))..)))	UGUG-UAUAGCUUUAGUGGUU&AAUUACUAUUGCUAUAAAACA	2	0.98974697782457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN8084_c1_g1_1492_TPlot.pdf
TRINITY_DN8086_c0_g1:1866	si_a430	TRINITY_DN8086_c0_g1	1855	1880	1866	-33.70	-22.20	0.658753709198813	14	1-8,1880-1873;9-20,1867-1856	x-x,1872-1868[BULt];21-21,1855-1855[UP3]	.((((((((((((.....((((((((&))))))))-----)))))))))))).	AAUAUCCAAUGGAAAAUGUUCUAUGU&AUAUAGGA-----UCCGUUGGAUAUG	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a430_TRINITY_DN8086_c0_g1_1866_TPlot.pdf
TRINITY_DN8086_c0_g1:3685	si_a138	TRINITY_DN8086_c0_g1	3673	3694	3685	-26.30	-17.30	0.657794676806084	7	2-9,3693-3686;11-18,3684-3677;19-21,3675-3673	1-1,3694-3694[UP5];10-10,3685-3685[SIL];x-x,3676-3676[BULt]	(((.((((((((.((((((((.&.)))))))).))))))))-)))	GGCAAACAACGGGUAAUUGCUU&UAGUAAUUAAUCGUUGUU-GUU	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN8086_c0_g1_3685_TPlot.pdf
TRINITY_DN8087_c0_g1:5865	si_s550	TRINITY_DN8087_c0_g1	5854	5874	5865	-20.30	-13.70	0.67487684729064	8	1-13,5874-5862	14-21,5861-5854[UP3]	........(((((((((((((&)))))))))))))........	AGUAAAAAAAUUCUAUUUUGA&UCAAAAUAGAAUUAAUAUUUU	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN8087_c0_g1_5865_TPlot.pdf
TRINITY_DN8087_c0_g1:5866	si_s549	TRINITY_DN8087_c0_g1	5855	5875	5866	-20.50	-13.70	0.668292682926829	8	2-14,5874-5862	1-1,5875-5875[UP5];15-21,5861-5855[UP3]	.......(((((((((((((.&.))))))))))))).......	GUAAAAAAAUUCUAUUUUGAA&AUCAAAAUAGAAUUAAUAUUU	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s549_TRINITY_DN8087_c0_g1_5866_TPlot.pdf
TRINITY_DN8089_c0_g1:1220	si_a895	TRINITY_DN8089_c0_g1	1209	1229	1220	-21.70	-15.40	0.709677419354839	4.5	2-7,1228-1223;9-21,1221-1209	1-1,1229-1229[UP5];8-8,1222-1222[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UAUGUUACUUAUUCUUAUUAA&AUAGUAAUAAUAAGUAAUAUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN8089_c0_g1_1220_TPlot.pdf
TRINITY_DN8089_c0_g1:418	si_a784	TRINITY_DN8089_c0_g1	406	427	418	-24.70	-20.90	0.846153846153846	4	2-16,426-412;17-21,410-406	1-1,427-427[UP5];x-x,411-411[BULt]	(((((.(((((((((((((((.&.)))))))))))))))-)))))	GAAAUGAGGAAAAUGGAAGAGG&ACUCUUCUAUUUUUCU-AUUUU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8089_c0_g1_418_TPlot.pdf
TRINITY_DN8089_c1_g1:1946	si_a711	TRINITY_DN8089_c1_g1	1936	1955	1946	-27.90	-18.20	0.652329749103943	6	1-13,1955-1943;15-18,1942-1939	14-14,x-x[BULq];19-21,1938-1936[UP3]	...((((-(((((((((((((&))))))))))))).))))...	GAAGAUG-UUAUUUUGGAGUG&CAUUCCAAAAUAAUCGUUACU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN8089_c1_g1_1946_TPlot.pdf
TRINITY_DN8089_c1_g1:1947	si_a710	TRINITY_DN8089_c1_g1	1937	1956	1947	-28.00	-18.40	0.657142857142857	6	2-14,1955-1943;16-19,1942-1939	1-1,1956-1956[UP5];15-15,x-x[BULq];20-21,1938-1937[UP3]	..((((-(((((((((((((.&.))))))))))))).))))..	AAGAUG-UUAUUUUGGAGUGG&ACAUUCCAAAAUAAUCGUUAC	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a710_TRINITY_DN8089_c1_g1_1947_TPlot.pdf
TRINITY_DN8089_c1_g1:1948	si_a709	TRINITY_DN8089_c1_g1	1938	1957	1948	-26.60	-18.40	0.691729323308271	7	3-15,1955-1943;17-20,1942-1939	1-2,1957-1956[UP5];16-16,x-x[BULq];21-21,1938-1938[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	AGAUG-UUAUUUUGGAGUGGU&UACAUUCCAAAAUAAUCGUUA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN8089_c1_g1_1948_TPlot.pdf
TRINITY_DN8089_c1_g1:1954	si_a703	TRINITY_DN8089_c1_g1	1943	1964	1954	-29.20	-21.10	0.722602739726028	8	3-9,1962-1956;10-21,1954-1943	1-2,1964-1963[UP5];x-x,1955-1955[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	UUAUUUUGGAGUGGUAUCGGAA&AACUGGUAC-AUUCCAAAAUAA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a703_TRINITY_DN8089_c1_g1_1954_TPlot.pdf
TRINITY_DN8089_c1_g1:641	si_a350	TRINITY_DN8089_c1_g1	630	649	641	-20.30	-13.80	0.679802955665025	9.5	1-6,649-644;10-21,641-630	7-9,643-642[AILq]	((((((((((((..-((((((&))))))...))))))))))))	UCAGAAUAGGGUGC-UGUUUU&AAAAUAUUAAUUCUAUUUUGA	4	0.999751042492817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN8089_c1_g1_641_TPlot.pdf
TRINITY_DN808_c0_g1:2117	si_s85	TRINITY_DN808_c0_g1	2107	2126	2117	-33.80	-23.80	0.70414201183432	5.5	1-2,2126-2125;4-18,2123-2109;20-21,2108-2107	3-3,2124-2124[SIL];19-19,x-x[BULq]	((-(((((((((((((((.((&)).))))))))))))))).))	GU-AAGAAGAGGAAGGGAUAG&CUUUCCUUUCUUCUUCUUCGC	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN808_c0_g1_2117_TPlot.pdf
TRINITY_DN808_c0_g1:2126	si_s77	TRINITY_DN808_c0_g1	2114	2135	2126	-25.50	-17.90	0.701960784313725	11	1-4,2135-2132;7-11,2129-2125;12-21,2123-2114	5-6,2131-2130[SIL];x-x,2124-2124[BULt]	((((((((((.(((((..((((&))))..)))))-))))))))))	GAGGAAGGGAUAGGGAUCGAGA&UUUUUUUUCUU-UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN808_c0_g1_2126_TPlot.pdf
TRINITY_DN8090_c0_g1:3530	si_a462	TRINITY_DN8090_c0_g1	3519	3539	3530	-21.20	-15.40	0.726415094339623	5.5	1-12,3539-3528;15-20,3525-3520	13-14,3527-3526[SIL];21-21,3519-3519[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	GAGUUACCAAUUAUAUAUGGC&GUUAUAUAUAAUAUGUAAUUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN8090_c0_g1_3530_TPlot.pdf
TRINITY_DN8090_c0_g1:3531	si_a461	TRINITY_DN8090_c0_g1	3520	3540	3531	-21.50	-16.00	0.744186046511628	4.5	1-13,3540-3528;16-21,3525-3520	14-15,3527-3526[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	AGUUACCAAUUAUAUAUGGCA&UGUUAUAUAUAAUAUGUAAUU	2	0.543472973267736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN8090_c0_g1_3531_TPlot.pdf
TRINITY_DN8090_c0_g1:3532	si_a460	TRINITY_DN8090_c0_g1	3521	3541	3532	-21.60	-15.60	0.722222222222222	5	1-14,3541-3528;17-21,3525-3521	15-16,3527-3526[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	GUUACCAAUUAUAUAUGGCAG&UUGUUAUAUAUAAUAUGUAAU	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN8090_c0_g1_3532_TPlot.pdf
TRINITY_DN8094_c0_g1:650	si_a70	TRINITY_DN8094_c0_g1	637	659	650	-23.90	-17.70	0.740585774058577	6.5	1-14,659-646;15-20,643-638	x-x,645-644[BULt];21-21,637-637[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	UGUGAAAUUAAUAGUUUGAAGGA&UCUUUCAAAUUGUU--UUUCAUU	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8094_c0_g1_650_TPlot.pdf
TRINITY_DN8094_c0_g1:652	si_a68	TRINITY_DN8094_c0_g1	639	661	652	-25.40	-19.80	0.779527559055118	4.5	1-16,661-646;17-21,643-639	x-x,645-644[BULt]	(((((..((((((((((((((((&))))))))))))))))--)))))	UGAAAUUAAUAGUUUGAAGGAAG&CUUCUUUCAAAUUGUU--UUUCA	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8094_c0_g1_652_TPlot.pdf
TRINITY_DN8094_c0_g1:653	si_a67	TRINITY_DN8094_c0_g1	640	662	653	-27.20	-20.50	0.753676470588235	4.5	1-17,662-646;18-21,643-640	x-x,645-644[BULt]	((((..(((((((((((((((((&)))))))))))))))))--))))	GAAAUUAAUAGUUUGAAGGAAGU&GCUUCUUUCAAAUUGUU--UUUC	4	0.958369545098195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8094_c0_g1_653_TPlot.pdf
TRINITY_DN8096_c0_g1:1046	si_s552	TRINITY_DN8096_c0_g1	1035	1055	1046	-21.10	-16.20	0.767772511848341	10	5-20,1051-1036	1-4,1055-1052[UP5];21-21,1035-1035[UP3]	.((((((((((((((((....&....)))))))))))))))).	AGGAGGUGUUAAUUCUAAAUU&AAAAUAGAAUUAAUAUUUUCG	2	0.526104729479359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN8096_c0_g1_1046_TPlot.pdf
TRINITY_DN8096_c0_g1:1048	si_s550	TRINITY_DN8096_c0_g1	1037	1057	1048	-20.30	-15.00	0.738916256157635	6.5	1-4,1057-1054;7-21,1051-1037	5-6,1053-1052[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	GAGGUGUUAAUUCUAAAUUGG&UCAAAAUAGAAUUAAUAUUUU	2	0.549119763300482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN8096_c0_g1_1048_TPlot.pdf
TRINITY_DN80_c0_g1:1545	si_s90	TRINITY_DN80_c0_g1	1533	1554	1545	-35.30	-23.80	0.674220963172805	8	1-9,1554-1546;11-16,1544-1539;18-20,1536-1534	10-10,1545-1545[SIL];17-17,1538-1537[AILt];21-21,1533-1533[UP3]	.(((..((((((.(((((((((&))))))))).))))))-.))).	ACGGUCGCGGAGUGGAGGAAAG&CUUUCUUCUUCUUCGC-UUCGG	2	0.999999868459029	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN80_c0_g1_1545_TPlot.pdf
TRINITY_DN80_c0_g1:1550	si_s85	TRINITY_DN80_c0_g1	1539	1559	1550	-33.80	-22.00	0.650887573964497	12	6-14,1554-1546;16-21,1544-1539	1-5,1559-1555[UP5];15-15,1545-1545[SIL]	((((((.(((((((((.....&.....))))))))).))))))	GCGGAGUGGAGGAAAGAACGU&CUUUCCUUUCUUCUUCUUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN80_c0_g1_1550_TPlot.pdf
TRINITY_DN8105_c0_g1:591	si_a709	TRINITY_DN8105_c0_g1	578	600	591	-26.60	-18.40	0.691729323308271	5.5	1-4,600-597;6-13,595-588;14-21,585-578	5-5,596-596[SIL];x-x,587-586[BULt]	((((((((..((((((((.((((&)))).))))))))--))))))))	UGAUGAUUUAGUUUUGGAUUGUA&UACAUUCCAAAAU--AAUCGUUA	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a709_TRINITY_DN8105_c0_g1_591_TPlot.pdf
TRINITY_DN8105_c3_g1:65	si_a313	TRINITY_DN8105_c3_g1	54	75	65	-28.70	-19.00	0.662020905923345	7.5	1-8,75-68;9-16,66-59	x-x,67-67[BULt];17-21,58-54[UP3]	.....((((((((.((((((((&))))))))-)))))))).....	UUUUAUAUGGAUAUAAUCCAAG&CUUGGAUU-UAUCCAUGAUUUU	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN8105_c3_g1_65_TPlot.pdf
TRINITY_DN8107_c0_g2:214	si_s832	TRINITY_DN8107_c0_g2	204	223	214	-25.40	-17.50	0.688976377952756	5.5	1-4,223-220;6-16,218-208;18-21,207-204	5-5,219-219[SIL];17-17,x-x[BULq]	((((-(((((((((((.((((&)))).))))))))))).))))	CUUC-UUCGGGUUGUUCUUCA&UGAAAAACAAUUUGAAAGAAG	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s832_TRINITY_DN8107_c0_g2_214_TPlot.pdf
TRINITY_DN8107_c0_g2:218	si_s828	TRINITY_DN8107_c0_g2	207	227	218	-21.90	-14.40	0.657534246575343	9.5	4-8,224-220;10-20,218-208	1-3,227-225[UP5];9-9,219-219[SIL];21-21,207-207[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CUUCGGGUUGUUCUUCAUCCC&AUAAUGAAAAACAAUUUGAAA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s828_TRINITY_DN8107_c0_g2_218_TPlot.pdf
TRINITY_DN8108_c0_g1:569	si_a70	TRINITY_DN8108_c0_g1	558	578	569	-23.90	-16.70	0.698744769874477	7	1-15,578-564	16-21,563-558[UP3]	......(((((((((((((((&)))))))))))))))......	ACUUCCAAACAAUUUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	2	0.999526037110807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8108_c0_g1_569_TPlot.pdf
TRINITY_DN8108_c0_g1:571	si_a68	TRINITY_DN8108_c0_g1	560	580	571	-25.40	-17.60	0.692913385826772	6	2-17,579-564	1-1,580-580[UP5];18-21,563-560[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUCCAAACAAUUUGAAGGAAU&CUUCUUUCAAAUUGUUUUUCA	4	0.999999794783401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8108_c0_g1_571_TPlot.pdf
TRINITY_DN8108_c0_g1:572	si_a67	TRINITY_DN8108_c0_g1	561	583	572	-27.20	-19.50	0.716911764705882	8	1-3,583-581;4-18,578-564	x-x,580-579[BULt];19-21,563-561[UP3]	...(((((((((((((((..(((&)))--)))))))))))))))...	UCCAAACAAUUUGAAGGAAUAGC&GCU--UCUUUCAAAUUGUUUUUC	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8108_c0_g1_572_TPlot.pdf
TRINITY_DN8108_c0_g1:574	si_a65	TRINITY_DN8108_c0_g1	563	585	574	-27.70	-23.00	0.830324909747292	6	1-5,585-581;6-20,578-564	x-x,580-579[BULt];21-21,563-563[UP3]	.(((((((((((((((..(((((&)))))--))))))))))))))).	CAAACAAUUUGAAGGAAUAGCGA&UCGCU--UCUUUCAAAUUGUUUU	3	0.372247189836884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN8108_c0_g1_574_TPlot.pdf
TRINITY_DN8108_c0_g1:577	si_a62	TRINITY_DN8108_c0_g1	566	588	577	-32.20	-21.50	0.667701863354037	10	4-8,585-581;9-21,578-566	1-3,588-586[UP5];x-x,580-579[BULt]	(((((((((((((..(((((...&...)))))--)))))))))))))	ACAAUUUGAAGGAAUAGCGAUAC&GACUCGCU--UCUUUCAAAUUGU	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN8108_c0_g1_577_TPlot.pdf
TRINITY_DN8108_c0_g1:79	si_a398	TRINITY_DN8108_c0_g1	68	88	79	-22.40	-14.70	0.65625	12	4-6,85-83;8-19,81-70	1-3,88-86[UP5];7-7,82-82[SIL];20-21,69-68[UP3]	..((((((((((((.(((...&...))).))))))))))))..	ACGACAAGACAGUUGUGUUAG&AAUAUAGAAUUGUUUUGUUUA	4	0.999999999978083	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN8108_c0_g1_79_TPlot.pdf
TRINITY_DN810_c0_g1:1090	si_a470	TRINITY_DN810_c0_g1	1079	1099	1090	-21.30	-13.90	0.652582159624413	13.5	6-18,1094-1082	1-5,1099-1095[UP5];19-21,1081-1079[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACAGACAAUAGUUACACCUCC&UAAUAUGUAAUUAUUGUUAUA	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN810_c0_g1_1090_TPlot.pdf
TRINITY_DN810_c0_g1:1092	si_a468	TRINITY_DN810_c0_g1	1081	1101	1092	-21.30	-13.90	0.652582159624413	15	8-20,1094-1082	1-7,1101-1095[UP5];21-21,1081-1081[UP3]	.(((((((((((((.......&.......))))))))))))).	AGACAAUAGUUACACCUCCGA&UAUAAUAUGUAAUUAUUGUUA	3	0.999990058145084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a468_TRINITY_DN810_c0_g1_1092_TPlot.pdf
TRINITY_DN810_c0_g1:958	si_a549	TRINITY_DN810_c0_g1	942	967	958	-29.50	-22.90	0.776271186440678	8	1-18,967-950;19-21,944-942	x-x,949-945[BULt]	(((.....((((((((((((((((((&))))))))))))))))))-----)))	GGAACGUUGAUGAAGAAGUAGGUUGG&UCAAUCUAUUUCUUUAUC-----UCC	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN810_c0_g1_958_TPlot.pdf
TRINITY_DN810_c0_g1:959	si_a548	TRINITY_DN810_c0_g1	948	968	959	-27.20	-22.60	0.830882352941177	6	1-19,968-950	20-21,949-948[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUGAUGAAGAAGUAGGUUGGG&UUCAAUCUAUUUCUUUAUCUC	2	0.127949232502716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN810_c0_g1_959_TPlot.pdf
TRINITY_DN810_c0_g1:960	si_a547	TRINITY_DN810_c0_g1	949	969	960	-26.90	-22.80	0.847583643122677	6.5	2-20,968-950	1-1,969-969[UP5];21-21,949-949[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UGAUGAAGAAGUAGGUUGGGG&GUUCAAUCUAUUUCUUUAUCU	4	0.169544747246193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN810_c0_g1_960_TPlot.pdf
TRINITY_DN810_c0_g1:961	si_a546	TRINITY_DN810_c0_g1	950	972	961	-28.60	-22.40	0.783216783216783	8.5	1-4,972-969;5-21,966-950	x-x,968-967[BULt]	(((((((((((((((((..((((&))))--)))))))))))))))))	GAUGAAGAAGUAGGUUGGGGAUC&GGUU--CAAUCUAUUUCUUUAUC	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN810_c0_g1_961_TPlot.pdf
TRINITY_DN810_c0_g1:962	si_a545	TRINITY_DN810_c0_g1	951	977	962	-28.10	-19.60	0.697508896797153	16	1-4,977-974;5-21,967-951	x-x,973-968[BULt]	(((((((((((((((((......((((&))))------)))))))))))))))))	AUGAAGAAGUAGGUUGGGGAUCAAUCG&CGGU------UCAAUCUAUUUCUUUAU	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN810_c0_g1_962_TPlot.pdf
TRINITY_DN810_c0_g1:963	si_a544	TRINITY_DN810_c0_g1	952	978	963	-28.90	-19.80	0.685121107266436	16	1-5,978-974;6-21,967-952	x-x,973-968[BULt]	((((((((((((((((......(((((&)))))------))))))))))))))))	UGAAGAAGUAGGUUGGGGAUCAAUCGA&UCGGU------UCAAUCUAUUUCUUUA	3	0.981464002540482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN810_c0_g1_963_TPlot.pdf
TRINITY_DN810_c0_g1:964	si_a543	TRINITY_DN810_c0_g1	953	979	964	-28.70	-20.00	0.696864111498258	16	1-6,979-974;7-21,967-953	x-x,973-968[BULt]	(((((((((((((((......((((((&))))))------)))))))))))))))	GAAGAAGUAGGUUGGGGAUCAAUCGAU&AUCGGU------UCAAUCUAUUUCUUU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a543_TRINITY_DN810_c0_g1_964_TPlot.pdf
TRINITY_DN810_c0_g1:982	si_a352	TRINITY_DN810_c0_g1	969	991	982	-22.50	-14.80	0.657777777777778	11.5	5-15,987-977;16-21,974-969	1-4,991-988[UP5];x-x,976-975[BULt]	((((((..(((((((((((....&....)))))))))))--))))))	GAUCAAUCGAUGGAAUUAGCAGC&AAUAUUAAUUCUAUU--UUGAUC	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN810_c0_g1_982_TPlot.pdf
TRINITY_DN810_c1_g2:743	si_a548	TRINITY_DN810_c1_g2	732	752	743	-27.20	-18.60	0.683823529411765	7	1-16,752-737;18-19,735-734	17-17,736-736[SIL];20-21,733-732[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	CUGACGAAGAAGUAGGUUGGG&UUCAAUCUAUUUCUUUAUCUC	2	0.963508487859299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN810_c1_g2_743_TPlot.pdf
TRINITY_DN810_c1_g2:744	si_a547	TRINITY_DN810_c1_g2	733	753	744	-26.90	-18.80	0.698884758364312	7.5	2-17,752-737;19-20,735-734	1-1,753-753[UP5];18-18,736-736[SIL];21-21,733-733[UP3]	.((.((((((((((((((((.&.)))))))))))))))).)).	UGACGAAGAAGUAGGUUGGGG&GUUCAAUCUAUUUCUUUAUCU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN810_c1_g2_744_TPlot.pdf
TRINITY_DN810_c1_g2:875	si_s63	TRINITY_DN810_c1_g2	864	887	875	-25.80	-17.30	0.670542635658915	11	2-7,886-881;8-19,877-866	1-1,887-887[UP5];x-x,880-878[BULt];20-21,865-864[UP3]	..((((((((((((...((((((.&.))))))---))))))))))))..	AUGGAGAUGGAAGUUCUUGCUAAA&GUUAGCA---ACUUCUAUUUUUUU	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN810_c1_g2_875_TPlot.pdf
TRINITY_DN810_c1_g2:876	si_s62	TRINITY_DN810_c1_g2	865	889	876	-26.50	-17.50	0.660377358490566	11	1-4,889-886;5-8,884-881;9-20,877-866	x-x,885-885[BULt];x-x,880-878[BULt];21-21,865-865[UP3]	.((((((((((((...((((.((((&))))-))))---)))))))))))).	UGGAGAUGGAAGUUCUUGCUAAACU&AGUU-AGCA---ACUUCUAUUUUUU	2	0.998764189281505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN810_c1_g2_876_TPlot.pdf
TRINITY_DN810_c1_g2:877	si_s61	TRINITY_DN810_c1_g2	866	890	877	-26.50	-18.40	0.694339622641509	10	1-5,890-886;6-9,884-881;10-21,877-866	x-x,885-885[BULt];x-x,880-878[BULt]	((((((((((((...((((.(((((&)))))-))))---))))))))))))	GGAGAUGGAAGUUCUUGCUAAACUU&AAGUU-AGCA---ACUUCUAUUUUU	2	0.954345126081691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN810_c1_g2_877_TPlot.pdf
TRINITY_DN8111_c0_g1:2361	si_s797	TRINITY_DN8111_c0_g1	2350	2376	2361	-30.00	-20.54	0.684666666666667	21	1-7,2376-2370;10-20,2361-2351	8-9,2369-2362[AILt];21-21,2350-2350[UP3]	.(((((((((((........(((((((&)))))))------..))))))))))).	AGACGAGGAUGGUGAGGACUUACGGGC&GCUCGUA------UUUUAUCUUCGUUA	3	0.999939752730674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN8111_c0_g1_2361_TPlot.pdf
TRINITY_DN8111_c0_g1:2362	si_s796	TRINITY_DN8111_c0_g1	2351	2377	2362	-30.30	-21.44	0.707590759075908	20	1-8,2377-2370;11-21,2361-2351	9-10,2369-2362[AILt]	(((((((((((........((((((((&))))))))------..)))))))))))	GACGAGGAUGGUGAGGACUUACGGGCU&AGCUCGUA------UUUUAUCUUCGUU	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN8111_c0_g1_2362_TPlot.pdf
TRINITY_DN8111_c0_g1:2393	si_s605	TRINITY_DN8111_c0_g1	2383	2402	2393	-27.50	-18.70	0.68	7.5	3-11,2400-2392;13-15,2390-2388;18-21,2386-2383	1-2,2402-2401[UP5];12-12,2391-2391[SIL];16-17,2387-2387[AILq]	((((.-(((.(((((((((..&..))))))))).)))..))))	GGAUG-GAAUAAGAUUCGCAG&AAGCGAAUCUUUUUUAAAUCC	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s605_TRINITY_DN8111_c0_g1_2393_TPlot.pdf
TRINITY_DN8113_c0_g1:3911	si_a789	TRINITY_DN8113_c0_g1	3900	3920	3911	-24.80	-16.50	0.665322580645161	10	2-3,3919-3918;5-18,3916-3903	1-1,3920-3920[UP5];4-4,3917-3917[SIL];19-21,3902-3900[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	AGAGGAGGAUAGAGAAGCGGC&UCUAUUUUUCUAUUUUCCAAU	2	0.99999988092552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN8113_c0_g1_3911_TPlot.pdf
TRINITY_DN8113_c0_g1:804	si_a500	TRINITY_DN8113_c0_g1	792	814	804	-34.40	-22.50	0.654069767441861	10.5	1-9,814-806;11-14,803-800;15-21,798-792	10-10,805-804[AILt];x-x,799-799[BULt]	(((((((.((((..(((((((((&)))))))))-.))))-)))))))	UCCAGGGAAAGGUGGGGGGACGA&UCGUUUUUC-GUCUU-CCUUGGA	2	0.999999739173207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN8113_c0_g1_804_TPlot.pdf
TRINITY_DN8117_c0_g1:264	si_a22	TRINITY_DN8117_c0_g1	253	273	264	-23.50	-15.30	0.651063829787234	7	2-17,272-257;20-21,254-253	1-1,273-273[UP5];18-19,256-255[SIL]	((..((((((((((((((((.&.))))))))))))))))..))	CUGUGGAUUGGAAAUGAAUAC&CUAUUUAUUUUUAGUUCUAAG	2	0.999907178014106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN8117_c0_g1_264_TPlot.pdf
TRINITY_DN8119_c0_g1:168	si_s480	TRINITY_DN8119_c0_g1	156	177	168	-25.00	-16.60	0.664	9	1-10,177-168;11-15,166-162	x-x,167-167[BULt];16-21,161-156[UP3]	......(((((.((((((((((&))))))))))-)))))......	CAGCACAUAAACUAUAGGGUCC&GGAUCCUAUA-UUUAUUUAAAU	2	0.989088653046503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN8119_c0_g1_168_TPlot.pdf
TRINITY_DN811_c0_g1:1032	si_s44	TRINITY_DN811_c0_g1	1021	1039	1032	-24.70	-16.40	0.663967611336032	6.5	1-6,1039-1034;9-21,1033-1021	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	AUUUGAAAUCCAA--AUUGGA&UUUAAUAAUUGGAUUUCAAGU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN811_c0_g1_1032_TPlot.pdf
TRINITY_DN811_c0_g1:1034	si_s42	TRINITY_DN811_c0_g1	1023	1042	1034	-24.90	-16.70	0.670682730923695	11	1-5,1042-1038;11-21,1033-1023	6-10,1037-1034[AILq]	(((((((((((....-(((((&))))).....)))))))))))	UUGAAAUCCAAAUUG-GAAGA&UCUUUAAUAAUUGGAUUUCAA	2	0.963959851951609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN811_c0_g1_1034_TPlot.pdf
TRINITY_DN811_c0_g1:1472	si_a784	TRINITY_DN811_c0_g1	1461	1482	1472	-24.70	-16.30	0.659919028340081	10.5	2-9,1481-1474;10-16,1472-1466	1-1,1482-1482[UP5];x-x,1473-1473[BULt];17-21,1465-1461[UP3]	.....(((((((.((((((((.&.))))))))-))))))).....	AACAAGGAAGAGUUAGAAGAGA&ACUCUUCUA-UUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN811_c0_g1_1472_TPlot.pdf
TRINITY_DN811_c0_g1:2021	si_a637	TRINITY_DN811_c0_g1	2010	2030	2021	-25.80	-17.60	0.682170542635659	8	2-15,2029-2016	1-1,2030-2030[UP5];16-21,2015-2010[UP3]	......((((((((((((((.&.))))))))))))))......	GAACUCCUCAAGAAAAUCGAG&GUCGAUUUUUUUGAGUAAUAU	4	0.999998837853321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN811_c0_g1_2021_TPlot.pdf
TRINITY_DN811_c0_g1:2941	si_a424	TRINITY_DN811_c0_g1	2939	2950	2941	-28.40	-19.20	0.676056338028169	3	11-21,2949-2939	10-10,2950-2950[SIL]	(((((((((((.&.)))))))))))	CAGCGGAUCCUU&AAAUAAAUAUAG	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a424_TRINITY_DN811_c0_g1_2941_TPlot.pdf
TRINITY_DN811_c0_g1:6009	si_a63	TRINITY_DN811_c0_g1	5998	6020	6009	-30.20	-20.20	0.66887417218543	7.5	2-4,6019-6017;5-13,6014-6006;15-20,6004-5999	1-1,6020-6020[UP5];x-x,6016-6015[BULt];14-14,6005-6005[SIL];21-21,5998-5998[UP3]	.((((((.(((((((((..(((.&.)))--))))))))).)))))).	CGCAAUUAGAAAGAAGCAAGAGC&ACUC--GCUUCUUUCAAAUUGUU	4	0.999395196467091	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN811_c0_g1_6009_TPlot.pdf
TRINITY_DN811_c0_g1:6036	si_s894	TRINITY_DN811_c0_g1	6025	6045	6036	-29.10	-19.20	0.65979381443299	14	5-16,6041-6030	1-4,6045-6042[UP5];17-21,6029-6025[UP3]	.....((((((((((((....&....)))))))))))).....	GCAACGAAGAGAGAGUCAAGA&AAUAGGCUUUCUCUUCAAUUU	3	0.999999996064119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN811_c0_g1_6036_TPlot.pdf
TRINITY_DN811_c0_g1:894	si_s47	TRINITY_DN811_c0_g1	883	903	894	-26.30	-17.80	0.67680608365019	11	6-20,898-884	1-5,903-899[UP5];21-21,883-883[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AUGAUUUGAAAUCCAAAAACA&AAUAAUUGGAUUUCAAGUUAG	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN811_c0_g1_894_TPlot.pdf
TRINITY_DN811_c0_g1:9259	si_s309	TRINITY_DN811_c0_g1	9248	9268	9259	-33.80	-22.74	0.672781065088757	10.5	1-5,9268-9264;11-21,9258-9248	6-10,9263-9259[SIL]	(((((((((((.....(((((&))))).....)))))))))))	CAAGAAGGACAAAACGUUCGU&GCGAAAAUUCUGUCCUUCUUG	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN811_c0_g1_9259_TPlot.pdf
TRINITY_DN8121_c0_g1:201	si_a408	TRINITY_DN8121_c0_g1	191	210	201	-20.10	-13.70	0.681592039800995	6	1-10,210-201;12-19,200-193	11-11,x-x[BULq];20-21,192-191[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	CCUUUAGGUA-AAACAGAACA&UGUUUUGUUUAUAUUUAAAUA	4	0.999999993467485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN8121_c0_g1_201_TPlot.pdf
TRINITY_DN8121_c0_g1:202	si_a407	TRINITY_DN8121_c0_g1	192	211	202	-19.80	-14.40	0.727272727272727	5	1-11,211-201;13-20,200-193	12-12,x-x[BULq];21-21,192-192[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	CUUUAGGUA-AAACAGAACAA&UUGUUUUGUUUAUAUUUAAAU	3	0.999990643960867	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8121_c0_g1_202_TPlot.pdf
TRINITY_DN8121_c0_g1:203	si_a406	TRINITY_DN8121_c0_g1	193	212	203	-19.80	-14.30	0.722222222222222	4	2-12,211-201;14-21,200-193	1-1,212-212[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	UUUAGGUA-AAACAGAACAAC&AUUGUUUUGUUUAUAUUUAAA	2	0.999963046198844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8121_c0_g1_203_TPlot.pdf
TRINITY_DN8121_c0_g1:204	si_a405	TRINITY_DN8121_c0_g1	194	213	204	-19.80	-13.40	0.676767676767677	6	3-13,211-201;15-21,200-194	1-2,213-212[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	UUAGGUA-AAACAGAACAACC&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8121_c0_g1_204_TPlot.pdf
TRINITY_DN8121_c0_g1:211	si_a398	TRINITY_DN8121_c0_g1	200	219	211	-22.40	-14.60	0.651785714285714	8.5	2-7,218-213;10-20,211-201	1-1,219-219[UP5];8-9,212-212[AILq];21-21,200-200[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	AAAACAGAACAAC-CUGUGUC&AAUAUAGAAUUGUUUUGUUUA	3	0.999999999994643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN8121_c0_g1_211_TPlot.pdf
TRINITY_DN8129_c0_g1:2848	si_a317	TRINITY_DN8129_c0_g1	2836	2856	2848	-24.30	-16.00	0.65843621399177	7	1-5,2856-2852;7-12,2851-2846;13-20,2844-2837	6-6,x-x[BULq];x-x,2845-2845[BULt];21-21,2836-2836[UP3]	.((((((((.((((((-(((((&))))).))))))-)))))))).	AGAGGGAAUGCAUGGA-AAAUC&GAUUUAUCCAUG-AUUUUUUUA	4	0.999999999947844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN8129_c0_g1_2848_TPlot.pdf
TRINITY_DN8129_c0_g1:4056	si_s316	TRINITY_DN8129_c0_g1	4043	4065	4056	-31.50	-20.58	0.653333333333333	12.5	1-12,4065-4054;15-18,4049-4046	13-14,4053-4050[AILt];19-21,4045-4043[UP3]	...((((....((((((((((((&))))))))))))--..))))...	GAAGUAGAAAUGGAGGGACAGGA&UUCUGUCCUUCU--UGUUACAAA	4	0.99999989399243	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN8129_c0_g1_4056_TPlot.pdf
TRINITY_DN812_c0_g1:2253	si_a753	TRINITY_DN812_c0_g1	2242	2266	2253	-33.10	-24.80	0.749244712990937	14	2-8,2265-2259;9-19,2254-2244	1-1,2266-2266[UP5];x-x,2258-2255[BULt];20-21,2243-2242[UP3]	..(((((((((((....(((((((.&.)))))))----)))))))))))..	CCGGACCCAAGGGUCCGGGGUUCAA&AUGAACCU----CCUUUGGGUUUUU	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN812_c0_g1_2253_TPlot.pdf
TRINITY_DN8136_c0_g1:2877	si_a820	TRINITY_DN8136_c0_g1	2866	2886	2877	-28.20	-18.40	0.652482269503546	8	1-14,2886-2873	15-21,2872-2866[UP3]	.......((((((((((((((&)))))))))))))).......	GUGAAUAUUUCUUUCUUCUUC&GAAGAAGAAAGGAAAGAAAAA	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a820_TRINITY_DN8136_c0_g1_2877_TPlot.pdf
TRINITY_DN8136_c0_g1:2887	si_a380	TRINITY_DN8136_c0_g1	2877	2896	2887	-24.00	-15.90	0.6625	7	3-13,2894-2884;16-20,2882-2878	1-2,2896-2895[UP5];14-15,2883-2883[AILq];21-21,2877-2877[UP3]	.(((((.-(((((((((((..&..)))))))))))..))))).	UUUCUUC-UUCGAAGUCAUAG&AAAUGAUUUCGAAUUAAGAAU	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN8136_c0_g1_2887_TPlot.pdf
TRINITY_DN8136_c0_g1:2888	si_a379	TRINITY_DN8136_c0_g1	2878	2897	2888	-23.90	-15.80	0.661087866108787	8	4-14,2894-2884;17-21,2882-2878	1-3,2897-2895[UP5];15-16,2883-2883[AILq]	(((((.-(((((((((((...&...)))))))))))..)))))	UUCUUC-UUCGAAGUCAUAGU&AAAAUGAUUUCGAAUUAAGAA	3	0.972212344612085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a379_TRINITY_DN8136_c0_g1_2888_TPlot.pdf
TRINITY_DN8136_c0_g1:3670	si_a472	TRINITY_DN8136_c0_g1	3660	3679	3670	-21.50	-14.10	0.655813953488372	4.5	1-15,3679-3665;17-19,3664-3662	16-16,x-x[BULq];20-21,3661-3660[UP3]	..(((-(((((((((((((((&))))))))))))))).)))..	UCUAU-AUAAUAGUUACAUAU&AUAUGUAAUUAUUGUUAUAUA	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN8136_c0_g1_3670_TPlot.pdf
TRINITY_DN8136_c0_g1:3671	si_a471	TRINITY_DN8136_c0_g1	3661	3680	3671	-21.10	-14.30	0.677725118483412	4.5	2-16,3679-3665;18-20,3664-3662	1-1,3680-3680[UP5];17-17,x-x[BULq];21-21,3661-3661[UP3]	.(((-(((((((((((((((.&.))))))))))))))).))).	CUAU-AUAAUAGUUACAUAUA&AAUAUGUAAUUAUUGUUAUAU	3	0.99998099775427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN8136_c0_g1_3671_TPlot.pdf
TRINITY_DN8136_c0_g1:3672	si_a470	TRINITY_DN8136_c0_g1	3662	3681	3672	-21.30	-14.20	0.666666666666667	5.5	3-17,3679-3665;19-21,3664-3662	1-2,3681-3680[UP5];18-18,x-x[BULq]	(((-(((((((((((((((..&..))))))))))))))).)))	UAU-AUAAUAGUUACAUAUAA&UAAUAUGUAAUUAUUGUUAUA	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN8136_c0_g1_3672_TPlot.pdf
TRINITY_DN8136_c0_g1:3673	si_a469	TRINITY_DN8136_c0_g1	3662	3682	3673	-21.10	-14.10	0.66824644549763	9.5	4-18,3679-3665	1-3,3682-3680[UP5];19-21,3664-3662[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAUAUAAUAGUUACAUAUAAA&AUAAUAUGUAAUUAUUGUUAU	3	0.999984791192561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN8136_c0_g1_3673_TPlot.pdf
TRINITY_DN8136_c0_g1:3676	si_a466	TRINITY_DN8136_c0_g1	3665	3685	3676	-21.50	-14.10	0.655813953488372	12	7-21,3679-3665	1-6,3685-3680[UP5]	(((((((((((((((......&......)))))))))))))))	AUAAUAGUUACAUAUAAACAU&UAUAUAAUAUGUAAUUAUUGU	3	0.99791789863463	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN8136_c0_g1_3676_TPlot.pdf
TRINITY_DN8137_c0_g1:244	si_a456	TRINITY_DN8137_c0_g1	232	253	244	-22.80	-15.90	0.697368421052632	11	3-15,251-239;16-20,237-233	1-2,253-252[UP5];x-x,238-238[BULt];21-21,232-232[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UGUGUUGGUGUGUGGCAGCAUG&AUUGUUGUUAUAUAU-AAUAUG	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN8137_c0_g1_244_TPlot.pdf
TRINITY_DN8139_c0_g1:390	si_a451	TRINITY_DN8139_c0_g1	379	400	390	-23.60	-20.20	0.85593220338983	6	2-7,399-394;8-21,392-379	1-1,400-400[UP5];x-x,393-393[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UAUAUGUGACGACAGAUUGUCA&AGAUAAU-UGUUGUUAUAUAUA	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN8139_c0_g1_390_TPlot.pdf
TRINITY_DN813_c0_g1:1347	si_a325	TRINITY_DN813_c0_g1	1336	1355	1347	-25.90	-17.28	0.667181467181467	11.5	1-8,1355-1348;15-21,1342-1336	9-14,1347-1343[AILq]	(((((((.....-((((((((&))))))))......)))))))	GCAAGGACGCCC-GAAUCAUG&CAUGAUUUUUUUAUUCCUUGU	3	0.999999050228898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN813_c0_g1_1347_TPlot.pdf
TRINITY_DN813_c0_g1:1348	si_a324	TRINITY_DN813_c0_g1	1337	1356	1348	-27.50	-18.08	0.657454545454545	10	1-9,1356-1348;16-21,1342-1337	10-15,1347-1343[AILq]	((((((.....-(((((((((&)))))))))......))))))	CAAGGACGCCC-GAAUCAUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.999998789065877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN813_c0_g1_1348_TPlot.pdf
TRINITY_DN813_c0_g1:1634	si_a708	TRINITY_DN813_c0_g1	1616	1642	1634	-28.00	-18.30	0.653571428571429	17.5	1-6,1642-1637;8-12,1636-1632;13-21,1624-1616	7-7,x-x[BULq];x-x,1631-1625[BULt]	(((((((((.......(((((-((((((&)))))).)))))-------)))))))))	AGCGAUUAUAACGGCUUUUGG-AUGUGC&GUACAUUCCAAA-------AUAAUCGUU	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a708_TRINITY_DN813_c0_g1_1634_TPlot.pdf
TRINITY_DN813_c0_g1:1715	si_a716	TRINITY_DN813_c0_g1	1703	1723	1715	-33.40	-21.80	0.652694610778443	8	1-6,1723-1718;9-17,1716-1708;18-20,1706-1704	7-8,1717-1717[AILq];x-x,1707-1707[BULt];21-21,1703-1703[UP3]	.(((.(((((((((.-((((((&))))))..)))))))))-))).	UCCCAGAGUAGCGAG-GUUUUG&CAAAAUAAUCGUUACUC-GGGC	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a716_TRINITY_DN813_c0_g1_1715_TPlot.pdf
TRINITY_DN813_c0_g1:1716	si_a715	TRINITY_DN813_c0_g1	1704	1724	1716	-33.30	-22.10	0.663663663663664	7.5	2-7,1723-1718;10-18,1716-1708;19-21,1706-1704	1-1,1724-1724[UP5];8-9,1717-1717[AILq];x-x,1707-1707[BULt]	(((.(((((((((.-((((((.&.))))))..)))))))))-)))	CCCAGAGUAGCGAG-GUUUUGU&CCAAAAUAAUCGUUACUC-GGG	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a715_TRINITY_DN813_c0_g1_1716_TPlot.pdf
TRINITY_DN813_c0_g1:1910	si_a469	TRINITY_DN813_c0_g1	1899	1920	1910	-21.10	-13.80	0.654028436018957	10.5	2-7,1919-1914;9-21,1911-1899	1-1,1920-1920[UP5];8-8,1913-1912[AILt]	(((((((((((((..((((((.&.))))))-.)))))))))))))	GUAACGAUGGUUAUGGUGUUGG&AUAAUAU-GUAAUUAUUGUUAU	3	0.999999849489981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN813_c0_g1_1910_TPlot.pdf
TRINITY_DN813_c0_g1:791	si_a642	TRINITY_DN813_c0_g1	780	800	791	-25.90	-18.30	0.706563706563707	7	3-12,798-789;14-20,787-781	1-2,800-799[UP5];13-13,788-788[SIL];21-21,780-780[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	UCGGUAUGAUACUCAGAAAUU&UUUUUUUGAGUAAUAUAUCGG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN813_c0_g1_791_TPlot.pdf
TRINITY_DN813_c0_g1:792	si_a641	TRINITY_DN813_c0_g1	781	801	792	-23.60	-17.30	0.733050847457627	8	4-13,798-789;15-21,787-781	1-3,801-799[UP5];14-14,788-788[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	CGGUAUGAUACUCAGAAAUUC&AUUUUUUUGAGUAAUAUAUCG	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN813_c0_g1_792_TPlot.pdf
TRINITY_DN8144_c0_g1:1141	si_a138	TRINITY_DN8144_c0_g1	1130	1151	1141	-26.30	-19.70	0.749049429657795	7	1-5,1151-1147;6-20,1145-1131	x-x,1146-1146[BULt];21-21,1130-1130[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	CAUGACAGCGAUUAGUAUGCUG&UAGUA-AUUAAUCGUUGUUGUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN8144_c0_g1_1141_TPlot.pdf
TRINITY_DN8144_c0_g2:1000	si_a139	TRINITY_DN8144_c0_g2	989	1010	1000	-25.90	-18.90	0.72972972972973	7.5	1-4,1010-1007;5-19,1005-991	x-x,1006-1006[BULt];20-21,990-989[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	ACAUGACAGCGAUUAGUAUGCU&AGUA-AUUAAUCGUUGUUGUUU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN8144_c0_g2_1000_TPlot.pdf
TRINITY_DN8144_c0_g2:1004	si_a135	TRINITY_DN8144_c0_g2	993	1014	1004	-25.70	-18.50	0.719844357976654	11	4-8,1011-1007;9-21,1005-993	1-3,1014-1012[UP5];x-x,1006-1006[BULt]	(((((((((((((.(((((...&...)))))-)))))))))))))	GACAGCGAUUAGUAUGCUGGCA&CAAUAGUA-AUUAAUCGUUGUU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN8144_c0_g2_1004_TPlot.pdf
TRINITY_DN8144_c0_g2:999	si_a140	TRINITY_DN8144_c0_g2	988	1009	999	-25.20	-17.50	0.694444444444444	9	1-3,1009-1007;4-18,1005-991	x-x,1006-1006[BULt];19-21,990-988[UP3]	...(((((((((((((((.(((&)))-)))))))))))))))...	UACAUGACAGCGAUUAGUAUGC&GUA-AUUAAUCGUUGUUGUUUU	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN8144_c0_g2_999_TPlot.pdf
TRINITY_DN814_c0_g1:1518	si_s247	TRINITY_DN814_c0_g1	1507	1527	1518	-31.70	-23.00	0.725552050473186	6.5	1-6,1527-1522;8-18,1520-1510	7-7,1521-1521[SIL];19-21,1509-1507[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	UAGAUAUUGGGGAACGCCUAU&AUAGGCAUUUCCCGAUAUAUU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s247_TRINITY_DN814_c0_g1_1518_TPlot.pdf
TRINITY_DN814_c0_g1:1521	si_s244	TRINITY_DN814_c0_g1	1510	1530	1521	-33.80	-22.80	0.674556213017752	8	4-9,1527-1522;11-21,1520-1510	1-3,1530-1528[UP5];10-10,1521-1521[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	AUAUUGGGGAACGCCUAUCCC&UCAAUAGGCAUUUCCCGAUAU	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN814_c0_g1_1521_TPlot.pdf
TRINITY_DN814_c0_g1:1546	si_a794	TRINITY_DN814_c0_g1	1533	1555	1546	-28.60	-19.70	0.688811188811189	6.5	2-13,1554-1543;15-21,1539-1533	1-1,1555-1555[UP5];14-14,1542-1540[AILt]	(((((((...((((((((((((.&.))))))))))))--.)))))))	UUUGGAUCUCGGAAGAUGGAAAU&UUUUCUAUUUUCC--AAUCCGAA	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a794_TRINITY_DN814_c0_g1_1546_TPlot.pdf
TRINITY_DN814_c0_g1:2985	si_a548	TRINITY_DN814_c0_g1	2973	2995	2985	-27.20	-18.90	0.694852941176471	7	2-7,2994-2989;8-14,2987-2981;16-21,2978-2973	1-1,2995-2995[UP5];x-x,2988-2988[BULt];15-15,2980-2979[AILt]	((((((..(((((((.((((((.&.))))))-)))))))-.))))))	GAGAUAUCAGAAGUGCGAUUGAU&UUCAAUC-UAUUUCU-UUAUCUC	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN814_c0_g1_2985_TPlot.pdf
TRINITY_DN814_c0_g1:392	si_a319	TRINITY_DN814_c0_g1	381	401	392	-22.40	-15.00	0.669642857142857	12	5-12,397-390;15-21,387-381	1-4,401-398[UP5];13-14,389-388[SIL]	(((((((..((((((((....&....))))))))..)))))))	GAUGGGAUUGUCAUGGACUGC&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN814_c0_g1_392_TPlot.pdf
TRINITY_DN8151_c0_g1:1808	si_a790	TRINITY_DN8151_c0_g1	1797	1821	1808	-25.80	-17.60	0.682170542635659	15	1-4,1821-1818;5-18,1813-1800	x-x,1817-1814[BULt];19-21,1799-1797[UP3]	...((((((((((((((....((((&))))----))))))))))))))...	AGCUGGAAAAUGGAGAAUUGCGUGG&CUAU----UUUUCUAUUUUCCAAUC	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN8151_c0_g1_1808_TPlot.pdf
TRINITY_DN8151_c0_g1:1828	si_a263	TRINITY_DN8151_c0_g1	1816	1837	1828	-40.90	-27.90	0.682151589242054	11.5	1-4,1837-1834;7-10,1831-1828;13-20,1824-1817	5-6,1833-1832[SIL];11-12,1827-1825[AILt];21-21,1816-1816[UP3]	.((((((((...((((..((((&))))..))))-..)))))))).	GCGUGGGCGGGGUGCCACCGAU&AUCGAGGGCA-AACGCCUACGA	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a263_TRINITY_DN8151_c0_g1_1828_TPlot.pdf
TRINITY_DN8151_c0_g1:1829	si_a262	TRINITY_DN8151_c0_g1	1817	1838	1829	-40.30	-28.20	0.699751861042184	10	1-5,1838-1834;8-11,1831-1828;14-21,1824-1817	6-7,1833-1832[SIL];12-13,1827-1825[AILt]	((((((((...((((..(((((&)))))..))))-..))))))))	CGUGGGCGGGGUGCCACCGAUG&UAUCGAGGGCA-AACGCCUACG	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a262_TRINITY_DN8151_c0_g1_1829_TPlot.pdf
TRINITY_DN8151_c0_g1:1934	si_a784	TRINITY_DN8151_c0_g1	1922	1943	1934	-24.70	-17.50	0.708502024291498	9.5	1-12,1943-1932;13-17,1930-1926	x-x,1931-1931[BULt];18-21,1925-1922[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	UGUCUGGAAGGGAUGGAAGAGU&ACUCUUCUAUUU-UUCUAUUUU	2	0.999967370818476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8151_c0_g1_1934_TPlot.pdf
TRINITY_DN8151_c0_g1:1935	si_a783	TRINITY_DN8151_c0_g1	1923	1944	1935	-24.70	-17.70	0.716599190283401	8	2-13,1943-1932;14-18,1930-1926	1-1,1944-1944[UP5];x-x,1931-1931[BULt];19-21,1925-1923[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	GUCUGGAAGGGAUGGAAGAGUC&AACUCUUCUAUUU-UUCUAUUU	2	0.999693409243789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8151_c0_g1_1935_TPlot.pdf
TRINITY_DN8151_c0_g1:1936	si_a782	TRINITY_DN8151_c0_g1	1924	1946	1936	-26.40	-18.10	0.685606060606061	7.5	1-2,1946-1945;3-14,1943-1932;15-19,1930-1926	x-x,1944-1944[BULt];x-x,1931-1931[BULt];20-21,1925-1924[UP3]	..(((((.((((((((((((.((&))-))))))))))))-)))))..	UCUGGAAGGGAUGGAAGAGUCUG&CA-ACUCUUCUAUUU-UUCUAUU	4	0.999994534553568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN8151_c0_g1_1936_TPlot.pdf
TRINITY_DN8151_c0_g1:1937	si_a781	TRINITY_DN8151_c0_g1	1925	1947	1937	-27.40	-18.20	0.664233576642336	7.5	2-3,1946-1945;4-15,1943-1932;16-20,1930-1926	1-1,1947-1947[UP5];x-x,1944-1944[BULt];x-x,1931-1931[BULt];21-21,1925-1925[UP3]	.(((((.((((((((((((.((.&.))-))))))))))))-))))).	CUGGAAGGGAUGGAAGAGUCUGG&UCA-ACUCUUCUAUUU-UUCUAU	2	0.999526037110807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN8151_c0_g1_1937_TPlot.pdf
TRINITY_DN8151_c0_g1:1938	si_a325	TRINITY_DN8151_c0_g1	1927	1946	1938	-25.90	-18.60	0.718146718146718	8	1-2,1946-1945;4-19,1944-1929;21-21,1927-1927	3-3,x-x[BULq];20-20,1928-1928[SIL]	(.((((((((((((((((-((&)).)))))))))))))))).)	GGAAGGGAUGGAAGAGUC-UG&CAUGAUUUUUUUAUUCCUUGU	2	0.922996673715249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN8151_c0_g1_1938_TPlot.pdf
TRINITY_DN8151_c0_g1:1940	si_a323	TRINITY_DN8151_c0_g1	1929	1948	1940	-26.80	-22.70	0.847014925373134	5.5	1-4,1948-1945;6-21,1944-1929	5-5,x-x[BULq]	((((((((((((((((-((((&)))).))))))))))))))))	AAGGGAUGGAAGAGUC-UGGA&UCCAUGAUUUUUUUAUUCCUU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN8151_c0_g1_1940_TPlot.pdf
TRINITY_DN8151_c0_g1:1941	si_a322	TRINITY_DN8151_c0_g1	1930	1949	1941	-27.00	-21.80	0.807407407407407	6.5	2-5,1948-1945;7-21,1944-1930	1-1,1949-1949[UP5];6-6,x-x[BULq]	(((((((((((((((-((((.&.)))).)))))))))))))))	AGGGAUGGAAGAGUC-UGGAA&AUCCAUGAUUUUUUUAUUCCU	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN8151_c0_g1_1941_TPlot.pdf
TRINITY_DN8151_c0_g1:1942	si_a321	TRINITY_DN8151_c0_g1	1931	1950	1942	-26.70	-20.50	0.767790262172285	8.5	3-6,1948-1945;8-21,1944-1931	1-2,1950-1949[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGGAUGGAAGAGUC-UGGAAG&UAUCCAUGAUUUUUUUAUUCC	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN8151_c0_g1_1942_TPlot.pdf
TRINITY_DN8151_c0_g1:1943	si_a320	TRINITY_DN8151_c0_g1	1932	1951	1943	-24.40	-17.20	0.704918032786885	10	4-7,1948-1945;9-21,1944-1932	1-3,1951-1949[UP5];8-8,x-x[BULq]	(((((((((((((-((((...&...)))).)))))))))))))	GGAUGGAAGAGUC-UGGAAGC&UUAUCCAUGAUUUUUUUAUUC	2	0.986517564249329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN8151_c0_g1_1943_TPlot.pdf
TRINITY_DN8151_c0_g1:2734	si_a188	TRINITY_DN8151_c0_g1	2724	2743	2734	-32.00	-22.80	0.7125	6	1-3,2743-2741;5-15,2739-2729;17-20,2728-2725	4-4,2740-2740[SIL];16-16,x-x[BULq];21-21,2724-2724[UP3]	.((((-(((((((((((.(((&))).))))))))))).)))).	AGGUG-ACGGGGAAAGACGUU&AAUAUCUUUCCCUGUUCACUA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN8151_c0_g1_2734_TPlot.pdf
TRINITY_DN8151_c0_g1:2736	si_a186	TRINITY_DN8151_c0_g1	2726	2745	2736	-31.50	-21.20	0.673015873015873	7.5	3-5,2743-2741;7-17,2739-2729;19-21,2728-2726	1-2,2745-2744[UP5];6-6,2740-2740[SIL];18-18,x-x[BULq]	(((-(((((((((((.(((..&..))).))))))))))).)))	GUG-ACGGGGAAAGACGUUUG&AUAAUAUCUUUCCCUGUUCAC	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN8151_c0_g1_2736_TPlot.pdf
TRINITY_DN8154_c0_g1:3923	si_a114	TRINITY_DN8154_c0_g1	3908	3932	3923	-27.90	-18.20	0.652329749103943	8.5	2-11,3931-3922;13-15,3920-3918;16-21,3913-3908	1-1,3932-3932[UP5];12-12,3921-3921[SIL];x-x,3917-3914[BULt]	((((((....(((.((((((((((.&.)))))))))).)))----))))))	CUAUGGUGUUAGCCAGCUCGUAUUG&AAAUACGAGCUUGUU----UUAUAG	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN8154_c0_g1_3923_TPlot.pdf
TRINITY_DN8154_c0_g1:4120	si_a836	TRINITY_DN8154_c0_g1	4108	4129	4120	-24.10	-15.80	0.655601659751037	13.5	7-17,4123-4113;18-20,4111-4109	1-6,4129-4124[UP5];x-x,4112-4112[BULt];21-21,4108-4108[UP3]	.(((.(((((((((((......&......)))))))))))-))).	AUAGCCAGCUUCUAUUGACUAG&AAAAAAAAUAGAAGUUG-CUAA	2	0.998204808553084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN8154_c0_g1_4120_TPlot.pdf
TRINITY_DN8156_c0_g1:2272	si_a171	TRINITY_DN8156_c0_g1	2261	2281	2272	-32.10	-20.90	0.651090342679128	11	3-15,2279-2267	1-2,2281-2280[UP5];16-21,2266-2261[UP3]	......(((((((((((((..&..)))))))))))))......	GGAGCGUUGGACGGGUGAGCA&UAUUCACCCGUCUAGAUAAUA	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN8156_c0_g1_2272_TPlot.pdf
TRINITY_DN8158_c0_g1:1631	si_a23	TRINITY_DN8158_c0_g1	1620	1640	1631	-22.80	-15.00	0.657894736842105	3	1-12,1640-1629;14-21,1627-1620	13-13,1628-1628[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	UUUUAGGAAUAAAAAUAGAUA&UAUUUAUUUUUAGUUCUAAGA	3	0.9999995773829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN8158_c0_g1_1631_TPlot.pdf
TRINITY_DN8158_c0_g1:1977	si_s69	TRINITY_DN8158_c0_g1	1966	1987	1977	-23.40	-16.02	0.684615384615385	10.5	1-9,1987-1979;13-20,1974-1967	10-12,1978-1975[AILt];21-21,1966-1966[UP3]	.((((((((....(((((((((&)))))))))-...)))))))).	AGAAGAAAAUUUUGUAGAAGUU&AACUUCUAU-UUUUUUUCUUUC	2	0.999999999999966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8158_c0_g1_1977_TPlot.pdf
TRINITY_DN8158_c0_g1:1979	si_s68	TRINITY_DN8158_c0_g1	1967	1988	1979	-23.10	-18.12	0.784415584415584	8.5	1-10,1988-1979;14-21,1974-1967	11-13,1978-1975[AILt]	((((((((....((((((((((&))))))))))-...))))))))	GAAGAAAAUUUUGUAGAAGUUG&CAACUUCUAU-UUUUUUUCUUU	2	0.945654791364244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8158_c0_g1_1979_TPlot.pdf
TRINITY_DN8158_c0_g1:1980	si_s67	TRINITY_DN8158_c0_g1	1965	1989	1980	-25.60	-21.00	0.8203125	10.5	1-11,1989-1979;12-20,1974-1966	x-x,1978-1975[BULt];21-21,1965-1965[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	CAGAAGAAAAUUUUGUAGAAGUUGC&GCAACUUCUAU----UUUUUUUCUU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8158_c0_g1_1980_TPlot.pdf
TRINITY_DN8158_c0_g1:1981	si_s66	TRINITY_DN8158_c0_g1	1966	1990	1981	-26.30	-21.20	0.806083650190114	10.5	2-12,1989-1979;13-21,1974-1966	1-1,1990-1990[UP5];x-x,1978-1975[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	AGAAGAAAAUUUUGUAGAAGUUGCC&AGCAACUUCUAU----UUUUUUUCU	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN8158_c0_g1_1981_TPlot.pdf
TRINITY_DN8158_c0_g1:1982	si_s65	TRINITY_DN8158_c0_g1	1967	1991	1982	-26.00	-20.00	0.769230769230769	8	3-13,1989-1979;14-21,1974-1967	1-2,1991-1990[UP5];x-x,1978-1975[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	GAAGAAAAUUUUGUAGAAGUUGCCA&UAGCAACUUCUAU----UUUUUUUC	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN8158_c0_g1_1982_TPlot.pdf
TRINITY_DN8158_c0_g1:1983	si_s64	TRINITY_DN8158_c0_g1	1968	1992	1983	-24.10	-16.80	0.697095435684647	10	4-14,1989-1979;15-21,1974-1968	1-3,1992-1990[UP5];x-x,1978-1975[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	AAGAAAAUUUUGUAGAAGUUGCCAA&UUAGCAACUUCUAU----UUUUUUU	3	0.999996386920118	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN8158_c0_g1_1983_TPlot.pdf
TRINITY_DN8159_c0_g1:176	si_s68	TRINITY_DN8159_c0_g1	162	185	176	-23.10	-15.50	0.670995670995671	10	3-16,183-170;17-21,166-162	1-2,185-184[UP5];x-x,169-167[BULt]	(((((...((((((((((((((..&..))))))))))))))---)))))	AAGGAACAGAGGAAGUGGAAGUAA&CAACUUCUAUUUUUUU---UCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8159_c0_g1_176_TPlot.pdf
TRINITY_DN815_c0_g1:353	si_a769	TRINITY_DN815_c0_g1	342	362	353	-26.70	-18.40	0.689138576779026	5	3-15,360-348;18-21,345-342	1-2,362-361[UP5];16-17,347-346[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	AAGAAAUGAAUCAAUCAAACA&UUUUUGAUUGAUUCAACUCUU	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN815_c0_g1_353_TPlot.pdf
TRINITY_DN815_c14_g1:450	si_s830	TRINITY_DN815_c14_g1	440	459	450	-23.90	-17.10	0.715481171548117	3.5	1-11,459-449;13-17,448-444;19-21,442-440	12-12,x-x[BULq];18-18,443-443[SIL]	(((.(((((-(((((((((((&))))))))))).))))).)))	UCUCUCAGA-UGUUUUUCAUU&AAUGAAAAACAAUUUGAAAGA	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s830_TRINITY_DN815_c14_g1_450_TPlot.pdf
TRINITY_DN815_c1_g2:766	si_a397	TRINITY_DN815_c1_g2	754	775	766	-24.00	-15.80	0.658333333333333	4	1-7,775-769;9-17,767-759;18-21,757-754	8-8,768-768[SIL];x-x,758-758[BULt]	((((.(((((((((.(((((((&))))))).)))))))))-))))	AAACAAAAACAAUUAUGUAUUC&GAAUAUAGAAUUGUUUU-GUUU	2	0.999520101235378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN815_c1_g2_766_TPlot.pdf
TRINITY_DN815_c3_g1:659	si_a350	TRINITY_DN815_c3_g1	648	668	659	-20.30	-13.20	0.650246305418719	11	5-9,664-660;11-21,658-648	1-4,668-665[UP5];10-10,659-659[SIL]	(((((((((((.(((((....&....))))).)))))))))))	UCGAAGUAGGAAUAAUAAAAC&AAAAUAUUAAUUCUAUUUUGA	3	0.99999954173757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN815_c3_g1_659_TPlot.pdf
TRINITY_DN815_c5_g1:1238	si_a406	TRINITY_DN815_c5_g1	1227	1247	1238	-19.80	-13.50	0.681818181818182	8	1-15,1247-1233	16-21,1232-1227[UP3]	......(((((((((((((((&)))))))))))))))......	CAGGCUUAUAGACAAAAUAAU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN815_c5_g1_1238_TPlot.pdf
TRINITY_DN815_c6_g1:98	si_a406	TRINITY_DN815_c6_g1	87	107	98	-19.80	-13.20	0.666666666666667	7.5	2-9,106-99;11-19,97-89	1-1,107-107[UP5];10-10,98-98[SIL];20-21,88-87[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	CAUAGAUAUGAUUAAAACAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN815_c6_g1_98_TPlot.pdf
TRINITY_DN8160_c6_g1:139	si_a460	TRINITY_DN8160_c6_g1	128	148	139	-21.60	-14.50	0.671296296296296	3.5	1-17,148-132;19-21,130-128	18-18,131-131[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	AUUUUAUAUUAUGUAUAAUAA&UUGUUAUAUAUAAUAUGUAAU	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN8160_c6_g1_139_TPlot.pdf
TRINITY_DN8160_c6_g1:140	si_a459	TRINITY_DN8160_c6_g1	129	149	140	-23.20	-17.70	0.762931034482759	5.5	1-18,149-132	19-21,131-129[UP3]	...((((((((((((((((((&))))))))))))))))))...	UUUUAUAUUAUGUAUAAUAAC&GUUGUUAUAUAUAAUAUGUAA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN8160_c6_g1_140_TPlot.pdf
TRINITY_DN8160_c6_g1:141	si_a458	TRINITY_DN8160_c6_g1	130	150	141	-23.80	-18.50	0.777310924369748	4.5	1-19,150-132	20-21,131-130[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	UUUAUAUUAUGUAUAAUAACA&UGUUGUUAUAUAUAAUAUGUA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN8160_c6_g1_141_TPlot.pdf
TRINITY_DN8160_c6_g1:142	si_a457	TRINITY_DN8160_c6_g1	131	151	142	-23.50	-18.60	0.791489361702128	4.5	2-20,150-132	1-1,151-151[UP5];21-21,131-131[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UUAUAUUAUGUAUAAUAACAC&UUGUUGUUAUAUAUAAUAUGU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN8160_c6_g1_142_TPlot.pdf
TRINITY_DN8160_c6_g1:144	si_a455	TRINITY_DN8160_c6_g1	133	153	144	-21.10	-17.50	0.829383886255924	6.5	4-21,150-133	1-3,153-151[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUAUUAUGUAUAAUAACACGU&AAUUGUUGUUAUAUAUAAUAU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN8160_c6_g1_144_TPlot.pdf
TRINITY_DN8160_c6_g1:145	si_a454	TRINITY_DN8160_c6_g1	134	154	145	-21.30	-16.50	0.774647887323944	8.5	5-21,150-134	1-4,154-151[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAUUAUGUAUAAUAACACGUG&UAAUUGUUGUUAUAUAUAAUA	0	0.0319962396459906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN8160_c6_g1_145_TPlot.pdf
TRINITY_DN8160_c6_g1:146	si_a453	TRINITY_DN8160_c6_g1	135	155	146	-21.10	-15.10	0.71563981042654	10.5	6-21,150-135	1-5,155-151[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUAUGUAUAAUAACACGUGU&AUAAUUGUUGUUAUAUAUAAU	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN8160_c6_g1_146_TPlot.pdf
TRINITY_DN8160_c7_g1:556	si_a412	TRINITY_DN8160_c7_g1	545	564	556	-18.30	-12.40	0.677595628415301	6.5	3-6,562-559;8-21,558-545	1-2,564-563[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	UGUUUAUUUAAAUA-GAACUA&UUGUUUAUAUUUAAAUAAAUA	4	0.999990457175591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN8160_c7_g1_556_TPlot.pdf
TRINITY_DN8161_c0_g1:2392	si_s305	TRINITY_DN8161_c0_g1	2381	2401	2392	-30.30	-19.70	0.65016501650165	13	5-9,2397-2393;12-21,2390-2381	1-4,2401-2398[UP5];10-11,2392-2391[SIL]	((((((((((..(((((....&....)))))..))))))))))	GAGGAUAGAGAGUUCGCCGAA&AAUUGCGAAAAUUCUGUCCUU	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN8161_c0_g1_2392_TPlot.pdf
TRINITY_DN8164_c0_g1:1388	si_s92	TRINITY_DN8164_c0_g1	1374	1397	1388	-34.90	-22.90	0.656160458452722	13	6-15,1392-1383;16-21,1379-1374	1-5,1397-1393[UP5];x-x,1382-1380[BULt]	((((((...((((((((((.....&.....))))))))))---))))))	GUCCGACACGGCGAAGAAGCGCUG&UUCUUCUUCUUCGCU---UCGGAU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN8164_c0_g1_1388_TPlot.pdf
TRINITY_DN8165_c0_g1:1060	si_a70	TRINITY_DN8165_c0_g1	1049	1068	1060	-23.90	-16.30	0.682008368200837	6	1-3,1068-1066;5-8,1064-1061;10-20,1060-1050	4-4,1065-1065[SIL];9-9,x-x[BULq];21-21,1049-1049[UP3]	.(((((((((((-((((.(((&))).)))).))))))))))).	UAUGAAAAACAG-UUGAUAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.99998434353007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8165_c0_g1_1060_TPlot.pdf
TRINITY_DN8168_c0_g1:1002	si_s808	TRINITY_DN8168_c0_g1	987	1011	1002	-28.60	-19.20	0.671328671328671	8.5	2-13,1010-999;14-19,994-989	1-1,1011-1011[UP5];x-x,998-995[BULt];20-21,988-987[UP3]	..((((((....((((((((((((.&.))))))))))))----))))))..	UAAAGGAACUCCAGGUAAUGAAGAG&AUCUUCGUUACCU----UUUCUUAA	4	0.999999997197659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN8168_c0_g1_1002_TPlot.pdf
TRINITY_DN8168_c0_g1:1735	si_s90	TRINITY_DN8168_c0_g1	1721	1744	1735	-35.30	-23.44	0.664022662889519	12.5	1-5,1744-1740;8-12,1737-1733;14-21,1728-1721	6-7,1739-1738[SIL];13-13,1732-1729[AILt]	((((((((....(((((..(((((&)))))..)))))---.))))))))	CCGAGGCGUUGCAGAGGCUGAAAG&CUUUCUUCUUCU---UCGCUUCGG	2	0.99999999685607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN8168_c0_g1_1735_TPlot.pdf
TRINITY_DN816_c0_g1:3129	si_s555	TRINITY_DN816_c0_g1	3118	3135	3129	-26.90	-17.50	0.650557620817844	8	1-6,3135-3130;10-21,3129-3118	7-9,x-x[BULq]	((((((((((((---((((((&))))))...))))))))))))	UCCUGAAGAUAU---UUCUGU&AUAGAAUUAAUAUUUUCGGGA	3	0.997062604531715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN816_c0_g1_3129_TPlot.pdf
TRINITY_DN816_c0_g1:3197	si_s623	TRINITY_DN816_c0_g1	3187	3207	3197	-36.40	-25.30	0.695054945054945	4	1-6,3207-3202;7-16,3200-3191;18-21,3190-3187	x-x,3201-3201[BULt];17-17,x-x[BULq]	((((-((((((((((.((((((&))))))-)))))))))).))))	CCUA-GAAAAGAUUGUCUUGGA&UCCAAG-CGAUCUUUUCGUAGG	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s623_TRINITY_DN816_c0_g1_3197_TPlot.pdf
TRINITY_DN816_c0_g1:3199	si_s601	TRINITY_DN816_c0_g1	3188	3208	3199	-28.30	-20.60	0.72791519434629	5.5	1-7,3208-3202;10-20,3199-3189	8-9,3201-3200[SIL];21-21,3188-3188[UP3]	.(((((((((((..(((((((&)))))))..))))))))))).	CUAGAAAAGAUUGUCUUGGAU&AUCCAAGCGAAUCUUUUUUAA	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN816_c0_g1_3199_TPlot.pdf
TRINITY_DN816_c0_g1:3202	si_s619	TRINITY_DN816_c0_g1	3190	3211	3202	-31.70	-22.70	0.71608832807571	9	4-10,3208-3202;11-20,3200-3191	1-3,3211-3209[UP5];x-x,3201-3201[BULt];21-21,3190-3190[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	AGAAAAGAUUGUCUUGGAUAGU&UAAAUCCAAG-CGAUCUUUUCG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s619_TRINITY_DN816_c0_g1_3202_TPlot.pdf
TRINITY_DN816_c0_g1:3662	si_s76	TRINITY_DN816_c0_g1	3650	3671	3662	-23.60	-16.00	0.677966101694915	12.5	6-14,3666-3658;15-21,3656-3650	1-5,3671-3667[UP5];x-x,3657-3657[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	AAGAAGGCGAGAGAAAGCUAUA&AUUUUUUUUCUUUC-CUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN816_c0_g1_3662_TPlot.pdf
TRINITY_DN816_c0_g1:5269	si_s899	TRINITY_DN816_c0_g1	5258	5278	5269	-28.30	-22.40	0.791519434628975	5.5	1-3,5278-5276;6-21,5273-5258	4-5,5275-5274[SIL]	((((((((((((((((..(((&)))..))))))))))))))))	AAUUGAAAUUGAGGAGCUAGU&GCUUUCUCUUCAAUUUCAAUU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN816_c0_g1_5269_TPlot.pdf
TRINITY_DN8170_c0_g1:126	si_a472	TRINITY_DN8170_c0_g1	115	135	126	-21.50	-14.30	0.665116279069767	9	4-18,132-118	1-3,135-133[UP5];19-21,117-115[UP3]	...(((((((((((((((...&...)))))))))))))))...	GAAAUGAUAAUAAUUACAGUG&AUAUGUAAUUAUUGUUAUAUA	3	0.999994472798421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN8170_c0_g1_126_TPlot.pdf
TRINITY_DN8170_c0_g1:1346	si_s389	TRINITY_DN8170_c0_g1	1335	1355	1346	-38.40	-26.30	0.684895833333333	5.5	2-16,1354-1340;18-18,1338-1338	1-1,1355-1355[UP5];17-17,1339-1339[SIL];19-21,1337-1335[UP3]	...(.(((((((((((((((.&.))))))))))))))).)...	GUAUGUUGGAAUGUAAGGCGA&CCGCCUUACAUUCCAAGGAAG	4	0.403131809108569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s389_TRINITY_DN8170_c0_g1_1346_TPlot.pdf
TRINITY_DN8170_c0_g1:1349	si_s386	TRINITY_DN8170_c0_g1	1338	1358	1349	-39.20	-26.30	0.670918367346939	8.5	5-19,1354-1340;21-21,1338-1338	1-4,1358-1355[UP5];20-20,1339-1339[SIL]	(.(((((((((((((((....&....))))))))))))))).)	UGUUGGAAUGUAAGGCGAAUU&UGUCCGCCUUACAUUCCAAGG	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s386_TRINITY_DN8170_c0_g1_1349_TPlot.pdf
TRINITY_DN8171_c0_g1:2193	si_s75	TRINITY_DN8171_c0_g1	2183	2202	2193	-24.00	-16.00	0.666666666666667	11.5	5-13,2198-2190;15-21,2189-2183	1-4,2202-2199[UP5];14-14,x-x[BULq]	(((((((-(((((((((....&....))))))))).)))))))	AGAGAGG-AAGAAGGAGCAAU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8171_c0_g1_2193_TPlot.pdf
TRINITY_DN8171_c0_g1:3421	si_a525	TRINITY_DN8171_c0_g1	3411	3437	3421	-44.10	-29.60	0.671201814058957	19	3-8,3435-3430;9-14,3422-3417;16-21,3416-3411	1-2,3437-3436[UP5];x-x,3429-3423[BULt];15-15,x-x[BULq]	((((((-((((((.......((((((..&..))))))-------)))))).))))))	GAUCGC-CGUGUGGGACUCCUCCGCCGU&AAGGCGGA-------CACGCGAGCGAUC	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a525_TRINITY_DN8171_c0_g1_3421_TPlot.pdf
TRINITY_DN8171_c0_g1:3563	si_a364	TRINITY_DN8171_c0_g1	3552	3572	3563	-27.70	-19.00	0.685920577617328	10	3-14,3570-3559	1-2,3572-3571[UP5];15-21,3558-3552[UP3]	.......((((((((((((..&..)))))))))))).......	GCCAGUGGAUCCGAUCAAAUG&AUUUUGAUCGGAUCAAAAAUG	4	0.878217744641393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN8171_c0_g1_3563_TPlot.pdf
TRINITY_DN8171_c0_g1:3565	si_a362	TRINITY_DN8171_c0_g1	3554	3573	3565	-28.00	-20.20	0.721428571428571	8	1-6,3573-3568;8-16,3567-3559	7-7,x-x[BULq];17-21,3558-3554[UP3]	.....(((((((((-((((((&)))))).))))))))).....	CAGUGGAUCCGAUC-AAAUGG&CUAUUUUGAUCGGAUCAAAAA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a362_TRINITY_DN8171_c0_g1_3565_TPlot.pdf
TRINITY_DN8173_c1_g1:1080	si_a464	TRINITY_DN8173_c1_g1	1069	1089	1080	-19.60	-13.90	0.709183673469388	7	1-8,1089-1082;11-19,1079-1071	9-10,1081-1080[SIL];20-21,1070-1069[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UCUAAUUACAUUCUAUAUGUA&UAUAUAUAAUAUGUAAUUAUU	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN8173_c1_g1_1080_TPlot.pdf
TRINITY_DN8173_c1_g1:1081	si_a463	TRINITY_DN8173_c1_g1	1070	1090	1081	-19.70	-14.00	0.710659898477157	7	2-9,1089-1082;12-20,1079-1071	1-1,1090-1090[UP5];10-11,1081-1080[SIL];21-21,1070-1070[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CUAAUUACAUUCUAUAUGUAC&UUAUAUAUAAUAUGUAAUUAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN8173_c1_g1_1081_TPlot.pdf
TRINITY_DN8173_c1_g1:1239	si_a463	TRINITY_DN8173_c1_g1	1228	1248	1239	-19.70	-14.40	0.730964467005076	4.5	2-9,1247-1240;11-21,1238-1228	1-1,1248-1248[UP5];10-10,1239-1239[SIL]	(((((((((((.((((((((.&.)))))))).)))))))))))	AUAAUUAUAUAGUAUAUGUAU&UUAUAUAUAAUAUGUAAUUAU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN8173_c1_g1_1239_TPlot.pdf
TRINITY_DN8174_c0_g3:154	si_s771	TRINITY_DN8174_c0_g3	143	163	154	-25.20	-22.20	0.880952380952381	7	2-19,162-145	1-1,163-163[UP5];20-21,144-143[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UGGUAGCAGUAGUAGUUGGUG&GAUUAAUUACUAUUGCUAUAA	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN8174_c0_g3_154_TPlot.pdf
TRINITY_DN8175_c0_g4:51	si_a403	TRINITY_DN8175_c0_g4	40	60	51	-22.00	-14.60	0.663636363636364	6.5	2-10,59-51;12-19,49-42	1-1,60-60[UP5];11-11,50-50[SIL];20-21,41-40[UP3]	..((((((((.(((((((((.&.))))))))).))))))))..	UUGUAUAAACCAAACAAUUUA&AGAAUUGUUUUGUUUAUAUUU	4	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN8175_c0_g4_51_TPlot.pdf
TRINITY_DN8175_c1_g1:52	si_a818	TRINITY_DN8175_c1_g1	41	61	52	-28.90	-18.90	0.653979238754325	5.5	1-9,61-53;11-19,51-43	10-10,52-52[SIL];20-21,42-41[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	UCUCUUUUCUUAUUUCUUCUU&AAGAAGAAGAAAGGAAAGAAA	4	0.999706340450849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a818_TRINITY_DN8175_c1_g1_52_TPlot.pdf
TRINITY_DN8177_c0_g1:1564	si_s64	TRINITY_DN8177_c0_g1	1553	1574	1564	-24.10	-15.90	0.659751037344398	9	2-8,1573-1567;9-20,1565-1554	1-1,1574-1574[UP5];x-x,1566-1566[BULt];21-21,1553-1553[UP3]	.((((((((((((.(((((((.&.)))))))-)))))))))))).	CAAGGGAGUGGAAUGUUGUUGU&UUAGCAAC-UUCUAUUUUUUUU	2	0.999999933660852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN8177_c0_g1_1564_TPlot.pdf
TRINITY_DN8181_c0_g1:3580	si_s774	TRINITY_DN8181_c0_g1	3569	3589	3580	-24.70	-18.70	0.757085020242915	9.5	3-17,3587-3573	1-2,3589-3588[UP5];18-21,3572-3569[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUUGUAUGGCAGUAGUAGUGA&UAAUUACUAUUGCUAUAAAAC	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN8181_c0_g1_3580_TPlot.pdf
TRINITY_DN8181_c0_g1:3581	si_s773	TRINITY_DN8181_c0_g1	3570	3590	3581	-23.10	-18.70	0.809523809523809	10.5	4-18,3587-3573	1-3,3590-3588[UP5];19-21,3572-3570[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUGUAUGGCAGUAGUAGUGAA&UUAAUUACUAUUGCUAUAAAA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN8181_c0_g1_3581_TPlot.pdf
TRINITY_DN8181_c0_g1:5093	si_a76	TRINITY_DN8181_c0_g1	5082	5102	5093	-21.20	-15.30	0.721698113207547	8.5	1-16,5102-5087	17-21,5086-5082[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAAUUUGAUGGAAAGCAGUUU&AAAUUGUUUUUCAUUAUUAAG	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN8181_c0_g1_5093_TPlot.pdf
TRINITY_DN8182_c1_g1:1008	si_s536	TRINITY_DN8182_c1_g1	997	1017	1008	-27.70	-18.10	0.653429602888087	10	1-13,1017-1005	14-21,1004-997[UP3]	........(((((((((((((&)))))))))))))........	AUGUAAAACGGGUCAAAGAUG&CAUUUUUGAUCCGAUCAAAAU	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN8182_c1_g1_1008_TPlot.pdf
TRINITY_DN8182_c1_g1:34	si_s79	TRINITY_DN8182_c1_g1	22	43	34	-26.20	-18.00	0.687022900763359	10	2-11,42-33;12-18,31-25	1-1,43-43[UP5];x-x,32-32[BULt];19-21,24-22[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	CUCGAGAGAGAGAGAGAGAGAG&UUUUUUCUUUC-CUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8182_c1_g1_34_TPlot.pdf
TRINITY_DN8182_c1_g2:71	si_a67	TRINITY_DN8182_c1_g2	57	80	71	-27.20	-19.00	0.698529411764706	8.5	1-6,80-75;8-18,73-63;19-21,59-57	7-7,74-74[SIL];x-x,62-60[BULt]	(((...(((((((((((.((((((&)))))).)))))))))))---)))	GAACUCGGACAGUUUGGCAGAGGC&GCUUCUUUCAAAUUGUUU---UUC	4	0.999988743695479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8182_c1_g2_71_TPlot.pdf
TRINITY_DN8183_c0_g1:1538	si_a318	TRINITY_DN8183_c0_g1	1527	1547	1538	-22.50	-14.70	0.653333333333333	8	2-11,1546-1537;13-18,1535-1530	1-1,1547-1547[UP5];12-12,1536-1536[SIL];19-21,1529-1527[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	UACAAGAAGCCAUGGAUGAAG&AUUUAUCCAUGAUUUUUUUAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN8183_c0_g1_1538_TPlot.pdf
TRINITY_DN8185_c0_g1:1498	si_a635	TRINITY_DN8185_c0_g1	1482	1507	1498	-26.10	-17.00	0.651340996168582	9.5	1-10,1507-1498;12-15,1496-1493;16-21,1487-1482	11-11,1497-1497[SIL];x-x,1492-1488[BULt]	((((((.....((((.((((((((((&)))))))))).))))-----))))))	AUUGCUGAAGCCAAAUGGAUCGACAU&AUGUCGAUUUUUUUG-----AGUAAU	3	0.999999999999914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN8185_c0_g1_1498_TPlot.pdf
TRINITY_DN8188_c1_g1:172	si_a288	TRINITY_DN8188_c1_g1	161	181	172	-28.20	-18.80	0.666666666666667	10	1-12,181-170	13-21,169-161[UP3]	.........((((((((((((&)))))))))))).........	AUAGAUGCCGAUCCAAGCGAU&AUCGCUUGGAUUUAAAAAAGA	4	0.896755931142284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN8188_c1_g1_172_TPlot.pdf
TRINITY_DN8188_c1_g1:177	si_a304	TRINITY_DN8188_c1_g1	164	187	177	-30.40	-21.10	0.694078947368421	10	4-6,184-182;7-17,180-170;18-21,167-164	1-3,187-185[UP5];x-x,181-181[BULt];x-x,169-168[BULt]	((((..(((((((((((.(((...&...)))-)))))))))))--))))	GAUGCCGAUCCAAGCGAUAUCAAA&AAAGAU-UCGCUUGGAUU--UAUC	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN8188_c1_g1_177_TPlot.pdf
TRINITY_DN8188_c1_g1:967	si_a409	TRINITY_DN8188_c1_g1	956	976	967	-19.50	-14.20	0.728205128205128	3.5	2-15,975-962;17-21,960-956	1-1,976-976[UP5];16-16,961-961[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	UUAUUCGAAUAUAAACGAAAA&GUUUUGUUUAUAUUUAAAUAA	4	0.999863181693435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN8188_c1_g1_967_TPlot.pdf
TRINITY_DN8188_c1_g1:972	si_a404	TRINITY_DN8188_c1_g1	961	981	972	-21.70	-16.50	0.76036866359447	4.5	1-5,981-977;7-20,975-962	6-6,976-976[SIL];21-21,961-961[UP3]	.((((((((((((((.(((((&))))).)))))))))))))).	CGAAUAUAAACGAAAAAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN8188_c1_g1_972_TPlot.pdf
TRINITY_DN818_c0_g1:813	si_a316	TRINITY_DN818_c0_g1	802	822	813	-26.30	-17.90	0.680608365019011	9	1-5,822-818;7-14,816-809	6-6,817-817[SIL];15-21,808-802[UP3]	.......((((((((.(((((&))))).)))))))).......	AUCAACCUCAUGGAUCAAUCC&GGAUUUAUCCAUGAUUUUUUU	4	0.999990843126648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN818_c0_g1_813_TPlot.pdf
TRINITY_DN818_c0_g1:819	si_a310	TRINITY_DN818_c0_g1	808	830	819	-33.70	-22.60	0.670623145400593	10	1-5,830-826;6-11,823-818;13-20,816-809	x-x,825-824[BULt];12-12,817-817[SIL];21-21,808-808[UP3]	.((((((((.((((((..(((((&)))))--)))))).)))))))).	CUCAUGGAUCAAUCCGUCGGUGA&UCGCU--UGGAUUUAUCCAUGAU	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN818_c0_g1_819_TPlot.pdf
TRINITY_DN8193_c0_g1:237	si_a20	TRINITY_DN8193_c0_g1	226	246	237	-26.70	-18.10	0.677902621722847	7.5	1-9,246-238;12-12,235-235;15-20,232-227	10-11,237-236[SIL];13-14,234-233[SIL];21-21,226-226[UP3]	.((((((..(..(((((((((&)))))))))..)..)))))).	AAGAACUUUAUUUAAAUAGGU&GCCUAUUUAUUUUUAGUUCUA	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN8193_c0_g1_237_TPlot.pdf
TRINITY_DN8198_c0_g1:4682	si_a887	TRINITY_DN8198_c0_g1	4671	4692	4682	-22.90	-15.40	0.672489082969432	7.5	3-7,4690-4686;8-19,4684-4673	1-2,4692-4691[UP5];x-x,4685-4685[BULt];20-21,4672-4671[UP3]	..((((((((((((.(((((..&..)))))-))))))))))))..	CAAUUAUUGCUAUACUUGAUGG&CAAUCAA-UAUAGUAAUAAUAA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN8198_c0_g1_4682_TPlot.pdf
TRINITY_DN8198_c0_g1:5219	si_a852	TRINITY_DN8198_c0_g1	5208	5227	5219	-28.80	-20.40	0.708333333333333	7	1-4,5227-5224;6-18,5223-5211	5-5,x-x[BULq];19-21,5210-5208[UP3]	...(((((((((((((-((((&)))).)))))))))))))...	AAUGUUGGAUUUCGAG-UAGU&GCUAACUUGAAAUCCAAUUAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a852_TRINITY_DN8198_c0_g1_5219_TPlot.pdf
TRINITY_DN8198_c0_g1:5248	si_a783	TRINITY_DN8198_c0_g1	5236	5257	5248	-24.70	-17.00	0.688259109311741	8	1-15,5257-5243;16-17,5241-5240	x-x,5242-5242[BULt];18-21,5239-5236[UP3]	....((.(((((((((((((((&)))))))))))))))-))....	UUUGAGCAGGAAUAGGGGAGUU&AACUCUUCUAUUUUU-CUAUUU	2	0.999998974502715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8198_c0_g1_5248_TPlot.pdf
TRINITY_DN8199_c0_g1:236	si_s445	TRINITY_DN8199_c0_g1	221	245	236	-21.10	-16.10	0.76303317535545	12.5	1-10,245-236;11-20,231-222	x-x,235-232[BULt];21-21,221-221[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	UGUUGUUGUUAAUUUUGUGUAGUAU&AUAUUAUAUA----UAACAACAAUU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s445_TRINITY_DN8199_c0_g1_236_TPlot.pdf
TRINITY_DN819_c0_g1:659	si_a789	TRINITY_DN819_c0_g1	649	668	659	-24.80	-16.50	0.665322580645161	6.5	1-3,668-666;5-11,664-658;13-21,657-649	4-4,665-665[SIL];12-12,x-x[BULq]	(((((((((-(((((((.(((&))).))))))).)))))))))	GUUGGAAAA-AGAAGGACAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999999996203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN819_c0_g1_659_TPlot.pdf
TRINITY_DN819_c0_g1:660	si_s316	TRINITY_DN819_c0_g1	649	669	660	-31.50	-21.76	0.690793650793651	5	1-13,669-657;18-20,652-650	14-17,656-653[SIL];21-21,649-649[UP3]	.(((....(((((((((((((&)))))))))))))....))).	GUUGGAAAAAGAAGGACAGAA&UUCUGUCCUUCUUGUUACAAA	4	0.998078472403302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN819_c0_g1_660_TPlot.pdf
TRINITY_DN819_c0_g1:663	si_s313	TRINITY_DN819_c0_g1	652	672	663	-30.80	-20.60	0.668831168831169	10	4-16,669-657	1-3,672-670[UP5];17-21,656-652[UP3]	.....(((((((((((((...&...))))))))))))).....	GGAAAAAGAAGGACAGAAACU&AAAUUCUGUCCUUCUUGUUAC	4	0.999994755598695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN819_c0_g1_663_TPlot.pdf
TRINITY_DN819_c0_g1:664	si_s312	TRINITY_DN819_c0_g1	653	673	664	-29.00	-20.60	0.710344827586207	11	5-17,669-657	1-4,673-670[UP5];18-21,656-653[UP3]	....(((((((((((((....&....)))))))))))))....	GAAAAAGAAGGACAGAAACUA&AAAAUUCUGUCCUUCUUGUUA	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN819_c0_g1_664_TPlot.pdf
TRINITY_DN819_c0_g1:902	si_a501	TRINITY_DN819_c0_g1	891	910	902	-33.50	-22.10	0.659701492537313	9.5	1-5,910-906;8-12,904-900;14-19,898-893	6-7,905-905[AILq];13-13,899-899[SIL];20-21,892-891[UP3]	..((((((.(((((.-(((((&)))))..))))).))))))..	ACCCGAGGCGGACGU-AGACG&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999992888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN819_c0_g1_902_TPlot.pdf
TRINITY_DN819_c0_g1:904	si_a499	TRINITY_DN819_c0_g1	893	912	904	-35.20	-22.90	0.650568181818182	8	2-7,911-906;10-14,904-900;16-21,898-893	1-1,912-912[UP5];8-9,905-905[AILq];15-15,899-899[SIL]	((((((.(((((.-((((((.&.))))))..))))).))))))	CCGAGGCGGACGU-AGACGAA&GUCGUUUUUCGUCUUCCUUGG	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN819_c0_g1_904_TPlot.pdf
TRINITY_DN81_c0_g1:1535	si_a411	TRINITY_DN81_c0_g1	1524	1544	1535	-17.90	-12.30	0.687150837988827	10.5	1-14,1544-1531	15-21,1530-1524[UP3]	.......((((((((((((((&)))))))))))))).......	UUUUCCAUGAGUAUGAGCAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.999999811047329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN81_c0_g1_1535_TPlot.pdf
TRINITY_DN8202_c0_g1:1444	si_s888	TRINITY_DN8202_c0_g1	1433	1453	1444	-26.80	-18.10	0.675373134328358	18.5	9-19,1445-1435	1-8,1453-1446[UP5];20-21,1434-1433[UP3]	..(((((((((((........&........)))))))))))..	UCGAGAGAGCCUGGGAAAUAG&AAAAUAAAUAGGCUUUCUCUU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN8202_c0_g1_1444_TPlot.pdf
TRINITY_DN8202_c0_g1:1453	si_a789	TRINITY_DN8202_c0_g1	1442	1462	1453	-24.80	-17.80	0.717741935483871	5.5	2-3,1461-1460;5-19,1458-1444	1-1,1462-1462[UP5];4-4,1459-1459[SIL];20-21,1443-1442[UP3]	..(((((((((((((((.((.&.)).)))))))))))))))..	CCUGGGAAAUAGAAAAACAGU&UCUAUUUUUCUAUUUUCCAAU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN8202_c0_g1_1453_TPlot.pdf
TRINITY_DN8202_c0_g1:1511	si_s78	TRINITY_DN8202_c0_g1	1500	1520	1511	-26.20	-17.50	0.66793893129771	7.5	3-12,1518-1509;14-20,1507-1501	1-2,1520-1519[UP5];13-13,1508-1508[SIL];21-21,1500-1500[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	UGAAGAAGAGAAAGAGGAAUU&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8202_c0_g1_1511_TPlot.pdf
TRINITY_DN8202_c0_g1:1553	si_a635	TRINITY_DN8202_c0_g1	1542	1562	1553	-26.10	-17.60	0.674329501915709	8.5	1-15,1562-1548	16-21,1547-1542[UP3]	......(((((((((((((((&)))))))))))))))......	UGGGUACGAAGGAAUCGACAU&AUGUCGAUUUUUUUGAGUAAU	4	0.99999999618061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN8202_c0_g1_1553_TPlot.pdf
TRINITY_DN8206_c0_g1:2740	si_a410	TRINITY_DN8206_c0_g1	2729	2749	2740	-17.80	-11.80	0.662921348314607	7	2-12,2748-2738;14-18,2736-2732	1-1,2749-2749[UP5];13-13,2737-2737[SIL];19-21,2731-2729[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	ACCGUUUGUAUAUAAACAGAC&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8206_c0_g1_2740_TPlot.pdf
TRINITY_DN8207_c0_g4:1506	si_s182	TRINITY_DN8207_c0_g4	1495	1515	1506	-32.60	-22.50	0.690184049079755	8.5	2-13,1514-1503;15-16,1501-1500	1-1,1515-1515[UP5];14-14,1502-1502[SIL];17-21,1499-1495[UP3]	.....((.((((((((((((.&.)))))))))))).)).....	GGGCUGUGGUUACUUGGGCAG&AUGCCCGAGUAACGAUUAUUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s182_TRINITY_DN8207_c0_g4_1506_TPlot.pdf
TRINITY_DN8207_c0_g4:1507	si_s181	TRINITY_DN8207_c0_g4	1496	1516	1507	-34.60	-22.50	0.65028901734104	9.5	3-14,1514-1503;16-17,1501-1500	1-2,1516-1515[UP5];15-15,1502-1502[SIL];18-21,1499-1496[UP3]	....((.((((((((((((..&..)))))))))))).))....	GGCUGUGGUUACUUGGGCAGA&GAUGCCCGAGUAACGAUUAUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN8207_c0_g4_1507_TPlot.pdf
TRINITY_DN8209_c0_g1:1796	si_s68	TRINITY_DN8209_c0_g1	1785	1804	1796	-23.10	-15.50	0.670995670995671	8	1-3,1804-1802;5-20,1801-1786	4-4,x-x[BULq];21-21,1785-1785[UP3]	.((((((((((((((((-(((&))).)))))))))))))))).	CGAGGAAAAGGGUAGGA-UUG&CAACUUCUAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8209_c0_g1_1796_TPlot.pdf
TRINITY_DN8209_c0_g1:2030	si_s797	TRINITY_DN8209_c0_g1	2019	2040	2030	-30.00	-19.60	0.653333333333333	9.5	2-5,2039-2036;6-14,2034-2026;17-20,2023-2020	1-1,2040-2040[UP5];x-x,2035-2035[BULt];15-16,2025-2024[SIL];21-21,2019-2019[UP3]	.((((..(((((((((.((((.&.))))-)))))))))..)))).	GGACGUUGAUGAAGUGUCGAGA&GCUCG-UAUUUUAUCUUCGUUA	3	0.999999998212847	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN8209_c0_g1_2030_TPlot.pdf
TRINITY_DN8209_c0_g1:2317	si_a890	TRINITY_DN8209_c0_g1	2304	2326	2317	-23.80	-17.60	0.739495798319328	5.5	1-14,2326-2313;15-20,2310-2305	x-x,2312-2311[BULt];21-21,2304-2304[UP3]	.((((((..((((((((((((((&))))))))))))))--)))))).	AGCUUAUGCUAUUAUUAUGUUGA&UCAAUAUAGUAAUA--AUAAGUA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a890_TRINITY_DN8209_c0_g1_2317_TPlot.pdf
TRINITY_DN8209_c0_g1:2318	si_a889	TRINITY_DN8209_c0_g1	2305	2327	2318	-23.60	-17.10	0.724576271186441	5.5	2-15,2326-2313;16-21,2310-2305	1-1,2327-2327[UP5];x-x,2312-2311[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	GCUUAUGCUAUUAUUAUGUUGAA&AUCAAUAUAGUAAUA--AUAAGU	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a889_TRINITY_DN8209_c0_g1_2318_TPlot.pdf
TRINITY_DN8209_c0_g1:4335	si_a788	TRINITY_DN8209_c0_g1	4324	4344	4335	-24.80	-17.40	0.701612903225806	11	4-19,4341-4326	1-3,4344-4342[UP5];20-21,4325-4324[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAGGAAGGUGGGGAAAUAUCG&UUCUAUUUUUCUAUUUUCCAA	3	0.999998789065877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN8209_c0_g1_4335_TPlot.pdf
TRINITY_DN8209_c0_g1:4598	si_s794	TRINITY_DN8209_c0_g1	4584	4607	4598	-31.20	-20.90	0.669871794871795	11	4-15,4604-4593;16-20,4589-4585	1-3,4607-4605[UP5];x-x,4592-4590[BULt];21-21,4584-4584[UP3]	.(((((...((((((((((((...&...))))))))))))---))))).	GGAGGAAACUAGGAUACGAGCAGC&CAAGCUCGUAUUUUA---UCUUCG	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN8209_c0_g1_4598_TPlot.pdf
TRINITY_DN8209_c0_g1:4882	si_a68	TRINITY_DN8209_c0_g1	4871	4894	4882	-25.40	-17.80	0.700787401574803	9	2-7,4893-4888;8-21,4884-4871	1-1,4894-4894[UP5];x-x,4887-4885[BULt]	((((((((((((((...((((((.&.))))))---))))))))))))))	UGAAAGACGAUUUGUUCAAGGAAA&CUUCUUU---CAAAUUGUUUUUCA	4	0.999996383167557	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8209_c0_g1_4882_TPlot.pdf
TRINITY_DN8209_c0_g1:4934	si_s3	TRINITY_DN8209_c0_g1	4923	4946	4934	-21.20	-15.40	0.726415094339623	13	2-8,4945-4939;9-21,4935-4923	1-1,4946-4946[UP5];x-x,4938-4936[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	AGUGGUGGUGAGUGUCGAUGUAGU&UUUAUAUU---ACUUAUUAUUACU	2	0.822718193921893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN8209_c0_g1_4934_TPlot.pdf
TRINITY_DN8216_c0_g1:1289	si_a75	TRINITY_DN8216_c0_g1	1277	1298	1289	-21.30	-14.60	0.685446009389671	6	1-5,1298-1294;7-10,1292-1289;11-21,1287-1277	6-6,1293-1293[SIL];x-x,1288-1288[BULt]	(((((((((((.((((.(((((&))))).))))-)))))))))))	UUGAUGAUGGAUAAACUAUUUG&CAAAUUGUUU-UUCAUUAUUAA	4	0.999999993050157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN8216_c0_g1_1289_TPlot.pdf
TRINITY_DN821_c0_g1:2727	si_a639	TRINITY_DN821_c0_g1	2716	2735	2727	-23.60	-15.52	0.657627118644068	12.5	2-5,2734-2731;10-21,2727-2716	1-1,2735-2735[UP5];6-9,2730-2728[AILq]	((((((((((((...-((((.&.))))....))))))))))))	AUGUGUUGCUCGUAU-GAUCA&CGAUUUUUUUGAGUAAUAUAU	2	0.999991057568356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN821_c0_g1_2727_TPlot.pdf
TRINITY_DN821_c0_g1:819	si_s740	TRINITY_DN821_c0_g1	806	829	819	-35.20	-24.30	0.690340909090909	6	1-8,829-822;9-13,820-816;15-16,814-813;17-21,810-806	x-x,821-821[BULt];14-14,815-815[SIL];x-x,812-811[BULt]	(((((..((.(((((.((((((((&))))))))-))))).))--)))))	UGAGGACUCUGUCUACUUCACCCG&CGGGUGAA-UAGAUUGA--CCUUA	2	0.456573759024738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s740_TRINITY_DN821_c0_g1_819_TPlot.pdf
TRINITY_DN821_c0_g1:831	si_s64	TRINITY_DN821_c0_g1	820	840	831	-24.10	-15.90	0.659751037344398	12	2-12,839-829	1-1,840-840[UP5];13-21,828-820[UP3]	.........(((((((((((.&.))))))))))).........	ACUUCACCCGGAAGUUGCUGG&UUAGCAACUUCUAUUUUUUUU	4	0.999999999998988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN821_c0_g1_831_TPlot.pdf
TRINITY_DN8220_c0_g1:1244	si_a250	TRINITY_DN8220_c0_g1	1226	1253	1244	-41.50	-28.90	0.696385542168675	14	2-10,1252-1244;11-13,1238-1236;14-21,1233-1226	1-1,1253-1253[UP5];x-x,1243-1239[BULt];x-x,1235-1234[BULt]	((((((((..(((.....(((((((((.&.)))))))))-----)))--))))))))	UCCUCGAUCUGCAGGUCCAUCGGGGGAA&AUCCCCCGAU-----UGU--AUCGAGGG	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a250_TRINITY_DN8220_c0_g1_1244_TPlot.pdf
TRINITY_DN8220_c0_g1:1508	si_a524	TRINITY_DN8220_c0_g1	1499	1517	1508	-42.50	-27.80	0.654117647058824	7	2-10,1516-1508;12-15,1507-1504;17-19,1503-1501	1-1,1517-1517[UP5];11-11,x-x[BULq];16-16,x-x[BULq];20-21,1500-1499[UP3]	..(((-((((-(((((((((.&.))))))))).)))).)))..	AACGC-CGCG-GUCUGCCUUU&UAAGGCGGACACGCGAGCGAU	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a524_TRINITY_DN8220_c0_g1_1508_TPlot.pdf
TRINITY_DN8225_c0_g2:130	si_a141	TRINITY_DN8225_c0_g2	119	139	130	-23.80	-17.10	0.718487394957983	13.5	7-20,133-120	1-6,139-134[UP5];21-21,119-119[UP3]	.((((((((((((((......&......)))))))))))))).	GAAAGCGGCAACGAUCUAAGA&UAAUUAAUCGUUGUUGUUUUA	4	0.998404257314011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN8225_c0_g2_130_TPlot.pdf
TRINITY_DN8225_c0_g2:377	si_a784	TRINITY_DN8225_c0_g2	366	386	377	-24.70	-17.40	0.704453441295547	7.5	2-5,385-382;7-18,380-369	1-1,386-386[UP5];6-6,381-381[SIL];19-21,368-366[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	AUCGUAGAAAAAUAGUAGGGG&ACUCUUCUAUUUUUCUAUUUU	2	0.999989872352742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8225_c0_g2_377_TPlot.pdf
TRINITY_DN822_c0_g1:877	si_s89	TRINITY_DN822_c0_g1	865	890	877	-35.30	-23.40	0.662889518413598	12.5	1-5,890-886;6-7,884-883;8-12,879-875;13-21,873-865	x-x,885-885[BULt];x-x,882-880[BULt];x-x,874-874[BULt]	(((((((((.(((((...((.(((((&)))))-))---)))))-)))))))))	CGGAGCGAAGGAAGACCAGGCGAAGG&CCUUU-CU---UCUUC-UUCGCUUCG	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN822_c0_g1_877_TPlot.pdf
TRINITY_DN8230_c0_g1:1280	si_a784	TRINITY_DN8230_c0_g1	1269	1289	1280	-24.70	-16.40	0.663967611336032	10	4-18,1286-1272	1-3,1289-1287[UP5];19-21,1271-1269[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUUAUAGAAAAAUGGAGGUCA&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999996257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8230_c0_g1_1280_TPlot.pdf
TRINITY_DN8231_c0_g2:179	si_a467	TRINITY_DN8231_c0_g2	168	188	179	-21.10	-16.40	0.777251184834123	3.5	1-20,188-169	21-21,168-168[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	UAUAAUAAUUAUGUAUUAUAU&AUAUAAUAUGUAAUUAUUGUU	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN8231_c0_g2_179_TPlot.pdf
TRINITY_DN8236_c0_g1:1175	si_a16	TRINITY_DN8236_c0_g1	1164	1185	1175	-26.30	-19.20	0.730038022813688	5	2-9,1184-1177;10-21,1175-1164	1-1,1185-1185[UP5];x-x,1176-1176[BULt]	((((((((((((.((((((((.&.))))))))-))))))))))))	GCUGAAAAUAAAUUAGGUUUUA&GAAAGCCUA-UUUAUUUUUAGU	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN8236_c0_g1_1175_TPlot.pdf
TRINITY_DN8236_c0_g1:1695	si_a791	TRINITY_DN8236_c0_g1	1681	1704	1695	-26.50	-18.20	0.686792452830189	11.5	2-4,1703-1701;6-10,1699-1695;11-21,1691-1681	1-1,1704-1704[UP5];5-5,1700-1700[SIL];x-x,1694-1692[BULt]	(((((((((((...(((((.(((.&.))).)))))---)))))))))))	GGAUUGGAGAAGAUUGGAAUGAUU&UAUUUUUCUA---UUUUCCAAUCC	3	0.99985612522912	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN8236_c0_g1_1695_TPlot.pdf
TRINITY_DN8236_c0_g1:702	si_a502	TRINITY_DN8236_c0_g1	691	711	702	-32.10	-21.70	0.67601246105919	8.5	1-7,711-705;10-18,702-694	8-9,704-703[SIL];19-21,693-691[UP3]	...(((((((((..(((((((&)))))))..)))))))))...	AUGCCAGGGAAGUGGGAAAAC&GUUUUUCGUCUUCCUUGGAAU	4	0.999999998959582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN8236_c0_g1_702_TPlot.pdf
TRINITY_DN8236_c0_g1:703	si_a501	TRINITY_DN8236_c0_g1	692	712	703	-33.50	-23.40	0.698507462686567	7.5	1-8,712-705;11-19,702-694	9-10,704-703[SIL];20-21,693-692[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UGCCAGGGAAGUGGGAAAACG&CGUUUUUCGUCUUCCUUGGAA	3	0.999950793848885	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN8236_c0_g1_703_TPlot.pdf
TRINITY_DN8238_c0_g1:1212	si_a374	TRINITY_DN8238_c0_g1	1201	1221	1212	-25.60	-18.40	0.71875	8	1-6,1221-1216;8-17,1214-1205	7-7,1215-1215[SIL];18-21,1204-1201[UP3]	....((((((((((.((((((&)))))).))))))))))....	CGCACGAGGUCGUUCUUGAUC&GAUCAAAAAUGAUUUCGAAUU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN8238_c0_g1_1212_TPlot.pdf
TRINITY_DN8238_c0_g1:1213	si_a373	TRINITY_DN8238_c0_g1	1202	1222	1213	-28.00	-19.50	0.696428571428571	7.5	1-7,1222-1216;9-18,1214-1205	8-8,1215-1215[SIL];19-21,1204-1202[UP3]	...((((((((((.(((((((&))))))).))))))))))...	GCACGAGGUCGUUCUUGAUCU&GGAUCAAAAAUGAUUUCGAAU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a373_TRINITY_DN8238_c0_g1_1213_TPlot.pdf
TRINITY_DN8238_c0_g1:1214	si_a372	TRINITY_DN8238_c0_g1	1203	1224	1214	-29.40	-19.80	0.673469387755102	8	1-2,1224-1223;3-8,1221-1216;10-19,1214-1205	x-x,1222-1222[BULt];9-9,1215-1215[SIL];20-21,1204-1203[UP3]	..((((((((((.((((((.((&))-)))))).))))))))))..	CACGAGGUCGUUCUUGAUCUCG&CG-GAUCAAAAAUGAUUUCGAA	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a372_TRINITY_DN8238_c0_g1_1214_TPlot.pdf
TRINITY_DN8238_c0_g1:1215	si_a371	TRINITY_DN8238_c0_g1	1204	1225	1215	-30.30	-19.80	0.653465346534653	7.5	2-3,1224-1223;4-9,1221-1216;11-20,1214-1205	1-1,1225-1225[UP5];x-x,1222-1222[BULt];10-10,1215-1215[SIL];21-21,1204-1204[UP3]	.((((((((((.((((((.((.&.))-)))))).)))))))))).	ACGAGGUCGUUCUUGAUCUCGC&UCG-GAUCAAAAAUGAUUUCGA	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a371_TRINITY_DN8238_c0_g1_1215_TPlot.pdf
TRINITY_DN8238_c0_g1:1216	si_a370	TRINITY_DN8238_c0_g1	1205	1226	1216	-29.50	-19.80	0.671186440677966	8.5	3-4,1224-1223;5-10,1221-1216;12-21,1214-1205	1-2,1226-1225[UP5];x-x,1222-1222[BULt];11-11,1215-1215[SIL]	((((((((((.((((((.((..&..))-)))))).))))))))))	CGAGGUCGUUCUUGAUCUCGCC&AUCG-GAUCAAAAAUGAUUUCG	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a370_TRINITY_DN8238_c0_g1_1216_TPlot.pdf
TRINITY_DN8238_c0_g1:1375	si_s71	TRINITY_DN8238_c0_g1	1359	1385	1375	-25.70	-17.50	0.680933852140078	11.5	1-8,1385-1378;9-17,1376-1368;18-20,1362-1360	x-x,1377-1377[BULt];x-x,1367-1363[BULt];21-21,1359-1359[UP3]	.(((.....(((((((((.((((((((&))))))))-)))))))))-----))).	CGGAAAUUUGAGAAAGAGCAAUGGAAG&CUUCUAUU-UUUUUUCUU-----UCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8238_c0_g1_1375_TPlot.pdf
TRINITY_DN8238_c0_g1:1376	si_s70	TRINITY_DN8238_c0_g1	1360	1386	1376	-25.80	-17.40	0.674418604651163	11.5	2-9,1385-1378;10-18,1376-1368;19-21,1362-1360	1-1,1386-1386[UP5];x-x,1377-1377[BULt];x-x,1367-1363[BULt]	(((.....(((((((((.((((((((.&.))))))))-)))))))))-----)))	GGAAAUUUGAGAAAGAGCAAUGGAAGG&ACUUCUAUU-UUUUUUCUU-----UCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8238_c0_g1_1376_TPlot.pdf
TRINITY_DN8238_c0_g1:1378	si_s69	TRINITY_DN8238_c0_g1	1366	1387	1378	-23.40	-15.60	0.666666666666667	10	3-10,1385-1378;11-19,1376-1368	1-2,1387-1386[UP5];x-x,1377-1377[BULt];20-21,1367-1366[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	UUGAGAAAGAGCAAUGGAAGGA&AACUUCUAUU-UUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8238_c0_g1_1378_TPlot.pdf
TRINITY_DN8238_c0_g1:1379	si_s68	TRINITY_DN8238_c0_g1	1367	1388	1379	-23.10	-15.60	0.675324675324675	11	4-11,1385-1378;12-20,1376-1368	1-3,1388-1386[UP5];x-x,1377-1377[BULt];21-21,1367-1367[UP3]	.(((((((((.((((((((...&...))))))))-))))))))).	UGAGAAAGAGCAAUGGAAGGAA&CAACUUCUAUU-UUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8238_c0_g1_1379_TPlot.pdf
TRINITY_DN8238_c0_g1:1382	si_a66	TRINITY_DN8238_c0_g1	1372	1391	1382	-26.70	-18.20	0.681647940074906	8	2-10,1390-1382;13-21,1380-1372	1-1,1391-1391[UP5];11-12,1381-1381[AILq]	(((((((((.-(((((((((.&.)))))))))..)))))))))	AAGAGCAAUG-GAAGGAAGUU&CGCUUCUUUCAAAUUGUUUUU	4	0.99999999913598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN8238_c0_g1_1382_TPlot.pdf
TRINITY_DN8238_c0_g1:780	si_a496	TRINITY_DN8238_c0_g1	763	789	780	-32.40	-21.30	0.657407407407407	12	1-2,789-788;5-17,785-773;18-21,766-763	3-4,787-786[SIL];x-x,772-767[BULt]	((((......(((((((((((((..((&))..)))))))))))))------))))	GGGAUCUGACGGACGAAGAACGAGCUA&UAUGUCGUUUUUCGUCU------UCCU	3	0.999999999999883	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN8238_c0_g1_780_TPlot.pdf
TRINITY_DN823_c0_g1:129	si_a464	TRINITY_DN823_c0_g1	118	138	129	-19.60	-13.10	0.668367346938775	11	5-18,134-121	1-4,138-135[UP5];19-21,120-118[UP3]	...((((((((((((((....&....))))))))))))))...	UUAAGUUGCAUAUUAUACGGU&UAUAUAUAAUAUGUAAUUAUU	3	0.999612043792297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN823_c0_g1_129_TPlot.pdf
TRINITY_DN823_c0_g1:130	si_a463	TRINITY_DN823_c0_g1	119	139	130	-19.70	-13.10	0.66497461928934	12	6-19,134-121	1-5,139-135[UP5];20-21,120-119[UP3]	..((((((((((((((.....&.....))))))))))))))..	UAAGUUGCAUAUUAUACGGUU&UUAUAUAUAAUAUGUAAUUAU	0	0.195978690458788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN823_c0_g1_130_TPlot.pdf
TRINITY_DN823_c0_g1:64	si_a413	TRINITY_DN823_c0_g1	52	73	64	-18.40	-12.80	0.695652173913044	5.5	2-13,72-61;14-19,59-54	1-1,73-73[UP5];x-x,60-60[BULt];20-21,53-52[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	AAAUUUGUAUUAAGUAUAAACU&UGUUUAUAUUUAA-AUAAAUAU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN823_c0_g1_64_TPlot.pdf
TRINITY_DN823_c0_g2:83	si_a464	TRINITY_DN823_c0_g2	72	92	83	-19.60	-12.80	0.653061224489796	12	5-18,88-75	1-4,92-89[UP5];19-21,74-72[UP3]	...((((((((((((((....&....))))))))))))))...	UUAAGUUGCAUAUUAUGCGGU&UAUAUAUAAUAUGUAAUUAUU	3	0.999975277163719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN823_c0_g2_83_TPlot.pdf
TRINITY_DN8241_c0_g1:145	si_s376	TRINITY_DN8241_c0_g1	132	158	145	-42.50	-27.70	0.651764705882353	14.5	1-9,158-150;10-13,145-142;14-20,139-133	x-x,149-146[BULt];x-x,141-140[BULt];21-21,132-132[UP3]	.(((((((..((((....(((((((((&)))))))))----))))--))))))).	CGAGGCGGCAACAUCGAAGUGAGCGGU&AUCGCUCGC----GUGU--CCGCCUUA	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN8241_c0_g1_145_TPlot.pdf
TRINITY_DN8241_c0_g2:695	si_a637	TRINITY_DN8241_c0_g2	684	704	695	-25.80	-17.60	0.682170542635659	8.5	2-12,703-693;14-19,691-686	1-1,704-704[UP5];13-13,692-692[SIL];20-21,685-684[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	CGGUUACUGGAAGAGAUUGAA&GUCGAUUUUUUUGAGUAAUAU	4	0.999998973233313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN8241_c0_g2_695_TPlot.pdf
TRINITY_DN8241_c0_g2:696	si_a636	TRINITY_DN8241_c0_g2	685	705	696	-26.30	-17.60	0.669201520912548	9	3-13,703-693;15-20,691-686	1-2,705-704[UP5];14-14,692-692[SIL];21-21,685-685[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	GGUUACUGGAAGAGAUUGAAG&UGUCGAUUUUUUUGAGUAAUA	3	0.99999996276671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN8241_c0_g2_696_TPlot.pdf
TRINITY_DN824_c0_g1:1442	si_s71	TRINITY_DN824_c0_g1	1430	1452	1442	-25.70	-17.00	0.66147859922179	9	1-5,1452-1448;7-17,1445-1435;18-20,1433-1431	6-6,1447-1446[AILt];x-x,1434-1434[BULt];21-21,1430-1430[UP3]	.(((.(((((((((((..(((((&)))))-.)))))))))))-))).	UGGACAAGAAAAGAAGGAGGAAG&CUUCU-AUUUUUUUUCUU-UCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN824_c0_g1_1442_TPlot.pdf
TRINITY_DN824_c0_g1:1623	si_s545	TRINITY_DN824_c0_g1	1612	1632	1623	-26.80	-18.60	0.694029850746269	9	1-7,1632-1626;10-16,1623-1617	8-9,1625-1624[SIL];17-21,1616-1612[UP3]	.....(((((((..(((((((&)))))))..))))))).....	UCAGUUUCUAUUCGGAUCGGA&UCCGAUCAAAAUAGAAUUAAU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s545_TRINITY_DN824_c0_g1_1623_TPlot.pdf
TRINITY_DN824_c0_g1:1624	si_s544	TRINITY_DN824_c0_g1	1613	1633	1624	-26.90	-18.60	0.691449814126394	9	2-8,1632-1626;11-17,1623-1617	1-1,1633-1633[UP5];9-10,1625-1624[SIL];18-21,1616-1613[UP3]	....(((((((..(((((((.&.)))))))..)))))))....	CAGUUUCUAUUCGGAUCGGAG&AUCCGAUCAAAAUAGAAUUAA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s544_TRINITY_DN824_c0_g1_1624_TPlot.pdf
TRINITY_DN824_c0_g1:1627	si_s541	TRINITY_DN824_c0_g1	1616	1637	1627	-29.20	-21.00	0.719178082191781	7	1-4,1637-1634;5-11,1632-1626;14-20,1623-1617	x-x,1633-1633[BULt];12-13,1625-1624[SIL];21-21,1616-1616[UP3]	.(((((((..(((((((.((((&))))-)))))))..))))))).	UUUCUAUUCGGAUCGGAGUCGA&UUGA-UCCGAUCAAAAUAGAAU	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s541_TRINITY_DN824_c0_g1_1627_TPlot.pdf
TRINITY_DN824_c0_g1:1630	si_s538	TRINITY_DN824_c0_g1	1619	1640	1630	-28.00	-19.70	0.703571428571429	6	2-7,1639-1634;8-14,1632-1626;17-21,1623-1619	1-1,1640-1640[UP5];x-x,1633-1633[BULt];15-16,1625-1624[SIL]	(((((..(((((((.((((((.&.))))))-)))))))..)))))	CUAUUCGGAUCGGAGUCGAAAU&UUUUUGA-UCCGAUCAAAAUAG	3	0.555032682092749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN824_c0_g1_1630_TPlot.pdf
TRINITY_DN8252_c0_g1:3997	si_s293	TRINITY_DN8252_c0_g1	3986	4009	3997	-34.30	-24.20	0.705539358600583	9.5	1-8,4009-4002;9-17,3998-3990;19-21,3988-3986	x-x,4001-3999[BULt];18-18,3989-3989[SIL]	(((.(((((((((...((((((((&))))))))---))))))))).)))	UUCUCGAUUCCGAGAUUCGACUGG&CUAGUCGA---UUGGAAUUGCGAA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s293_TRINITY_DN8252_c0_g1_3997_TPlot.pdf
TRINITY_DN8252_c0_g1:4747	si_a398	TRINITY_DN8252_c0_g1	4735	4756	4747	-22.40	-14.60	0.651785714285714	10.5	3-12,4754-4745;13-18,4743-4738	1-2,4756-4755[UP5];x-x,4744-4744[BULt];19-21,4737-4735[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	GUCACAAAGUCGAUUCUGUAAU&AAUAUAGAAUUG-UUUUGUUUA	2	0.99999993609218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN8252_c0_g1_4747_TPlot.pdf
TRINITY_DN8252_c0_g1:4748	si_a397	TRINITY_DN8252_c0_g1	4736	4758	4748	-24.00	-16.30	0.679166666666667	7.5	1-4,4758-4755;5-13,4753-4745;14-19,4743-4738	x-x,4754-4754[BULt];x-x,4744-4744[BULt];20-21,4737-4736[UP3]	..((((((.(((((((((.((((&))))-)))))))))-))))))..	UCACAAAGUCGAUUCUGUAAUUC&GAAU-AUAGAAUUG-UUUUGUUU	3	0.999287907158467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN8252_c0_g1_4748_TPlot.pdf
TRINITY_DN8252_c0_g1:4749	si_a396	TRINITY_DN8252_c0_g1	4737	4759	4749	-24.70	-16.40	0.663967611336032	7	2-5,4758-4755;6-14,4753-4745;15-20,4743-4738	1-1,4759-4759[UP5];x-x,4754-4754[BULt];x-x,4744-4744[BULt];21-21,4737-4737[UP3]	.((((((.(((((((((.((((.&.))))-)))))))))-)))))).	CACAAAGUCGAUUCUGUAAUUCA&AGAAU-AUAGAAUUG-UUUUGUU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN8252_c0_g1_4749_TPlot.pdf
TRINITY_DN8252_c0_g1:4750	si_a395	TRINITY_DN8252_c0_g1	4738	4760	4750	-24.70	-16.40	0.663967611336032	8	3-6,4758-4755;7-15,4753-4745;16-21,4743-4738	1-2,4760-4759[UP5];x-x,4754-4754[BULt];x-x,4744-4744[BULt]	((((((.(((((((((.((((..&..))))-)))))))))-))))))	ACAAAGUCGAUUCUGUAAUUCAU&AAGAAU-AUAGAAUUG-UUUUGU	3	0.996546203081176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN8252_c0_g1_4750_TPlot.pdf
TRINITY_DN8258_c0_g1:1097	si_a629	TRINITY_DN8258_c0_g1	1086	1105	1097	-26.30	-17.10	0.650190114068441	8.5	2-6,1104-1100;8-20,1099-1087	1-1,1105-1105[UP5];7-7,x-x[BULq];21-21,1086-1086[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	UGGAAAGAUCGGCG-AGUACC&CGUAUUAUGUCGAUUUUUUUG	4	0.999999869687671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN8258_c0_g1_1097_TPlot.pdf
TRINITY_DN8258_c0_g1:1099	si_a627	TRINITY_DN8258_c0_g1	1088	1107	1099	-29.50	-19.20	0.650847457627119	8	1-2,1107-1106;4-8,1104-1100;10-21,1099-1088	3-3,1105-1105[SIL];9-9,x-x[BULq]	((((((((((((-(((((.((&)).))))).))))))))))))	GAAAGAUCGGCG-AGUACCCC&GGCGUAUUAUGUCGAUUUUUU	4	0.999999980491757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN8258_c0_g1_1099_TPlot.pdf
TRINITY_DN825_c0_g1:747	si_a233	TRINITY_DN825_c0_g1	736	756	747	-28.90	-19.08	0.660207612456747	7	1-11,756-746;15-20,742-737	12-14,745-743[SIL];21-21,736-736[UP3]	.((((((...(((((((((((&)))))))))))...)))))).	UGAUCGAUGAGGUUGUAGAAA&UUUCUAUAAUCAAUUCGAUCC	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a233_TRINITY_DN825_c0_g1_747_TPlot.pdf
TRINITY_DN825_c0_g1:802	si_a68	TRINITY_DN825_c0_g1	791	811	802	-25.40	-17.40	0.68503937007874	6.5	2-18,810-794	1-1,811-811[UP5];19-21,793-791[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAUAAAACGGUUUGAAAGGAU&CUUCUUUCAAAUUGUUUUUCA	4	0.999999960642865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN825_c0_g1_802_TPlot.pdf
TRINITY_DN8263_c0_g1:1670	si_s582	TRINITY_DN8263_c0_g1	1659	1679	1670	-22.50	-15.20	0.675555555555556	11	5-19,1675-1661	1-4,1679-1676[UP5];20-21,1660-1659[UP3]	..(((((((((((((((....&....)))))))))))))))..	UGUUGUCUAUGGUUUUUAAAA&AUAAAAAAAUCAUGGAUAAAU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN8263_c0_g1_1670_TPlot.pdf
TRINITY_DN8263_c0_g1:2395	si_a875	TRINITY_DN8263_c0_g1	2384	2404	2395	-27.10	-18.60	0.686346863468635	8	1-4,2404-2401;6-17,2399-2388	5-5,2400-2400[SIL];18-21,2387-2384[UP3]	....((((((((((((.((((&)))).))))))))))))....	GCUGGAUUGCAAUUAGUUCUU&AAGAUUUAGUUGCAAUCAAUA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a875_TRINITY_DN8263_c0_g1_2395_TPlot.pdf
TRINITY_DN8263_c0_g1:2396	si_a874	TRINITY_DN8263_c0_g1	2385	2405	2396	-26.70	-18.80	0.704119850187266	8	2-5,2404-2401;7-18,2399-2388	1-1,2405-2405[UP5];6-6,2400-2400[SIL];19-21,2387-2385[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	CUGGAUUGCAAUUAGUUCUUA&AAAGAUUUAGUUGCAAUCAAU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN8263_c0_g1_2396_TPlot.pdf
TRINITY_DN8263_c0_g1:2399	si_a871	TRINITY_DN8263_c0_g1	2388	2408	2399	-26.40	-18.40	0.696969696969697	10.5	5-8,2404-2401;10-21,2399-2388	1-4,2408-2405[UP5];9-9,2400-2400[SIL]	((((((((((((.((((....&....)))).))))))))))))	GAUUGCAAUUAGUUCUUAAAA&AUUAAAGAUUUAGUUGCAAUC	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a871_TRINITY_DN8263_c0_g1_2399_TPlot.pdf
TRINITY_DN8263_c0_g1:3540	si_s84	TRINITY_DN8263_c0_g1	3529	3549	3540	-32.30	-21.40	0.662538699690402	6	1-5,3549-3545;8-20,3542-3530	6-7,3544-3543[SIL];21-21,3529-3529[UP3]	.(((((((((((((..(((((&)))))..))))))))))))).	AGAAGAAGAAGAAGAAAAAGA&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8263_c0_g1_3540_TPlot.pdf
TRINITY_DN8263_c0_g1:3541	si_s83	TRINITY_DN8263_c0_g1	3530	3550	3541	-30.90	-21.90	0.70873786407767	5	1-6,3550-3545;9-21,3542-3530	7-8,3544-3543[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAAGAAGAAGAAAAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8263_c0_g1_3541_TPlot.pdf
TRINITY_DN8263_c0_g3:568	si_s81	TRINITY_DN8263_c0_g3	558	577	568	-28.90	-20.30	0.70242214532872	10	5-15,573-563;17-21,562-558	1-4,577-574[UP5];16-16,x-x[BULq]	(((((-(((((((((((....&....))))))))))).)))))	AGAAG-AGAAGGGAAGGUUUC&UUUUCUUUCCUUUCUUCUUCU	2	0.999999999997991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN8263_c0_g3_568_TPlot.pdf
TRINITY_DN8263_c0_g3:569	si_s79	TRINITY_DN8263_c0_g3	557	578	569	-26.20	-17.80	0.679389312977099	12.5	6-13,573-566;14-21,564-557	1-5,578-574[UP5];x-x,565-565[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	AAGAAGAGAAGGGAAGGUUUCA&UUUUUUCUUUCCU-UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8263_c0_g3_569_TPlot.pdf
TRINITY_DN8263_c0_g3:614	si_a144	TRINITY_DN8263_c0_g3	603	623	614	-27.40	-19.30	0.704379562043796	6.5	2-17,622-607;19-21,605-603	1-1,623-623[UP5];18-18,606-606[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	CCUAAAAGCGAUGAUGAUUAU&UUAAUCGUUGUUGUUUUAAGG	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN8263_c0_g3_614_TPlot.pdf
TRINITY_DN8263_c0_g3:968	si_s569	TRINITY_DN8263_c0_g3	957	977	968	-30.60	-20.90	0.683006535947712	8	2-12,976-966;15-17,963-961	1-1,977-977[UP5];13-14,965-964[SIL];18-21,960-957[UP3]	....(((..(((((((((((.&.)))))))))))..)))....	UGGCUUAGGCCUUGUUCCGAU&UUCGGGACAAGGAAUAAAAAA	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s569_TRINITY_DN8263_c0_g3_968_TPlot.pdf
TRINITY_DN8263_c0_g3:974	si_s563	TRINITY_DN8263_c0_g3	963	983	974	-30.80	-20.30	0.659090909090909	11	3-6,981-978;8-18,976-966	1-2,983-982[UP5];7-7,977-977[SIL];19-21,965-963[UP3]	...(((((((((((.((((..&..)))).)))))))))))...	AGGCCUUGUUCCGAUAGUGCU&AAUAUUUUCGGGACAAGGAAU	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN8263_c0_g3_974_TPlot.pdf
TRINITY_DN8263_c0_g3:975	si_s562	TRINITY_DN8263_c0_g3	964	984	975	-31.10	-20.30	0.652733118971061	11.5	4-7,981-978;9-19,976-966	1-3,984-982[UP5];8-8,977-977[SIL];20-21,965-964[UP3]	..(((((((((((.((((...&...)))).)))))))))))..	GGCCUUGUUCCGAUAGUGCUA&UAAUAUUUUCGGGACAAGGAA	2	0.890891719660921	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s562_TRINITY_DN8263_c0_g3_975_TPlot.pdf
TRINITY_DN8263_c0_g3:976	si_s561	TRINITY_DN8263_c0_g3	965	985	976	-31.10	-20.60	0.662379421221865	7.5	1-3,985-983;5-8,981-978;10-20,976-966	4-4,982-982[SIL];9-9,977-977[SIL];21-21,965-965[UP3]	.(((((((((((.((((.(((&))).)))).))))))))))).	GCCUUGUUCCGAUAGUGCUAA&UUAAUAUUUUCGGGACAAGGA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s561_TRINITY_DN8263_c0_g3_976_TPlot.pdf
TRINITY_DN8263_c0_g3:977	si_s560	TRINITY_DN8263_c0_g3	966	986	977	-30.20	-20.40	0.675496688741722	7.5	2-4,985-983;6-9,981-978;11-21,976-966	1-1,986-986[UP5];5-5,982-982[SIL];10-10,977-977[SIL]	(((((((((((.((((.(((.&.))).)))).)))))))))))	CCUUGUUCCGAUAGUGCUAAC&AUUAAUAUUUUCGGGACAAGG	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s560_TRINITY_DN8263_c0_g3_977_TPlot.pdf
TRINITY_DN8264_c0_g1:646	si_s159	TRINITY_DN8264_c0_g1	632	657	646	-42.60	-27.88	0.654460093896714	13	1-8,657-650;11-16,645-640;17-20,636-633	9-10,649-646[AILt];x-x,639-637[BULt];21-21,632-632[UP3]	.((((...((((((....((((((((&))))))))--..))))))---)))).	GUACCAAACCUGGCAUGUUGGACCUC&GAGGUUCA--UGGCCAGG---GGUAA	4	0.997779756207742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN8264_c0_g1_646_TPlot.pdf
TRINITY_DN8266_c0_g1:2061	si_a285	TRINITY_DN8266_c0_g1	2050	2070	2061	-28.30	-18.70	0.660777385159011	13.5	5-16,2066-2055	1-4,2070-2067[UP5];17-21,2054-2050[UP3]	.....((((((((((((....&....)))))))))))).....	AAACAGAAUCCAGGCGAGAUC&AAGAUCGCUUGGAUUUAAAAA	4	0.999979936255575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN8266_c0_g1_2061_TPlot.pdf
TRINITY_DN8266_c0_g1:399	si_a784	TRINITY_DN8266_c0_g1	384	408	399	-24.70	-16.40	0.663967611336032	14	3-11,406-398;12-21,393-384	1-2,408-407[UP5];x-x,397-394[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	GAGAUGGAGAAGAAAAUAGAGGAAU&ACUCUUCUAUU----UUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8266_c0_g1_399_TPlot.pdf
TRINITY_DN8266_c0_g1:406	si_s79	TRINITY_DN8266_c0_g1	390	417	406	-26.20	-17.70	0.675572519083969	11	1-8,417-410;9-14,407-402;15-21,396-390	x-x,409-408[BULt];x-x,401-397[BULt]	(((((((.....((((((..((((((((&))))))))--))))))-----)))))))	GAGAAGAAAAUAGAGGAAUUAGAGAAAA&UUUUUUCU--UUCCUU-----UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8266_c0_g1_406_TPlot.pdf
TRINITY_DN8266_c0_g1:414	si_s71	TRINITY_DN8266_c0_g1	403	423	414	-25.70	-18.20	0.708171206225681	4.5	2-14,422-410;17-21,407-403	1-1,423-423[UP5];15-16,409-408[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	AGGAAUUAGAGAAAAUAGAAA&CUUCUAUUUUUUUUCUUUCCU	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8266_c0_g1_414_TPlot.pdf
TRINITY_DN8267_c0_g1:2546	si_a783	TRINITY_DN8267_c0_g1	2535	2554	2546	-24.70	-16.60	0.672064777327935	7.5	3-7,2552-2548;9-21,2547-2535	1-2,2554-2553[UP5];8-8,x-x[BULq]	(((((((((((((-(((((..&..))))).)))))))))))))	GAAUGGGAAGAUA-AAGAGGU&AACUCUUCUAUUUUUCUAUUU	2	0.999999999220026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8267_c0_g1_2546_TPlot.pdf
TRINITY_DN8267_c0_g1:2742	si_a410	TRINITY_DN8267_c0_g1	2731	2751	2742	-17.80	-12.10	0.679775280898876	11	1-15,2751-2737	16-21,2736-2731[UP3]	......(((((((((((((((&)))))))))))))))......	CUCGAGUGAGUAUAGGCGAAG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999857706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8267_c0_g1_2742_TPlot.pdf
TRINITY_DN8267_c0_g1:2746	si_a406	TRINITY_DN8267_c0_g1	2735	2755	2746	-19.80	-13.20	0.666666666666667	13	3-3,2753-2753;5-19,2751-2737	1-2,2755-2754[UP5];4-4,2752-2752[SIL];20-21,2736-2735[UP3]	..(((((((((((((((.(..&..).)))))))))))))))..	AGUGAGUAUAGGCGAAGGGGA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8267_c0_g1_2746_TPlot.pdf
TRINITY_DN8267_c0_g1:2855	si_s420	TRINITY_DN8267_c0_g1	2844	2864	2855	-23.70	-16.40	0.691983122362869	7.5	1-4,2864-2861;6-17,2859-2848	5-5,2860-2860[SIL];18-21,2847-2844[UP3]	....((((((((((((.((((&)))).))))))))))))....	GACGUGUUGUGUAGAAGAUGU&ACAUAUUCUAUAUAACAAUAA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s420_TRINITY_DN8267_c0_g1_2855_TPlot.pdf
TRINITY_DN8267_c0_g1:2856	si_s419	TRINITY_DN8267_c0_g1	2845	2865	2856	-25.60	-20.20	0.7890625	6.5	1-5,2865-2861;7-18,2859-2848	6-6,2860-2860[SIL];19-21,2847-2845[UP3]	...((((((((((((.(((((&))))).))))))))))))...	ACGUGUUGUGUAGAAGAUGUC&GACAUAUUCUAUAUAACAAUA	2	0.149388634771574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s419_TRINITY_DN8267_c0_g1_2856_TPlot.pdf
TRINITY_DN8267_c0_g1:2857	si_s418	TRINITY_DN8267_c0_g1	2846	2866	2857	-26.70	-20.30	0.760299625468165	6	2-6,2865-2861;8-19,2859-2848	1-1,2866-2866[UP5];7-7,2860-2860[SIL];20-21,2847-2846[UP3]	..((((((((((((.(((((.&.))))).))))))))))))..	CGUGUUGUGUAGAAGAUGUCA&CGACAUAUUCUAUAUAACAAU	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s418_TRINITY_DN8267_c0_g1_2857_TPlot.pdf
TRINITY_DN826_c0_g1:4452	si_a452	TRINITY_DN826_c0_g1	4441	4461	4452	-23.00	-15.40	0.669565217391304	9.5	1-5,4461-4457;7-7,4455-4455;9-19,4453-4443	6-6,4456-4456[SIL];8-8,4454-4454[SIL];20-21,4442-4441[UP3]	..(((((((((((.(.(((((&))))).).)))))))))))..	GGGUGUGUAACAAGGCUUGUC&GAUAAUUGUUGUUAUAUAUAA	3	0.999889416257926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a452_TRINITY_DN826_c0_g1_4452_TPlot.pdf
TRINITY_DN8270_c0_g1:3985	si_a71	TRINITY_DN8270_c0_g1	3974	3993	3985	-23.30	-15.20	0.652360515021459	12.5	1-5,3993-3989;9-20,3986-3975	6-8,3988-3987[AILq];21-21,3974-3974[UP3]	.((((((((((((..-(((((&)))))...)))))))))))).	CGGUGGAGGGCGAGG-GAGAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999999957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN8270_c0_g1_3985_TPlot.pdf
TRINITY_DN8270_c0_g1:4001	si_a667	TRINITY_DN8270_c0_g1	3990	4015	4001	-32.10	-21.30	0.663551401869159	17.5	1-8,4015-4008;9-10,4002-4001;12-20,3999-3991	x-x,4007-4003[BULt];11-11,4000-4000[SIL];21-21,3990-3990[UP3]	.(((((((((.((.....((((((((&))))))))-----)).))))))))).	AGAGUGGGGGUUCUGGGGGAUGGGCA&UGCCUAUU-----GAUUCCUUAUUCA	2	0.910592693643966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN8270_c0_g1_4001_TPlot.pdf
TRINITY_DN8270_c0_g1:6949	si_s809	TRINITY_DN8270_c0_g1	6938	6958	6949	-28.50	-20.40	0.715789473684211	8	1-5,6958-6954;7-17,6952-6942	6-6,6953-6953[SIL];18-21,6941-6938[UP3]	....(((((((((((.(((((&))))).)))))))))))....	AUGCAGAAAAGGUGGAGAAGA&UCUUCGUUACCUUUUCUUAAU	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN8270_c0_g1_6949_TPlot.pdf
TRINITY_DN8270_c0_g1:6958	si_s87	TRINITY_DN8270_c0_g1	6947	6969	6958	-32.90	-22.90	0.696048632218845	7.5	1-6,6969-6964;7-8,6961-6960;10-21,6958-6947	x-x,6963-6962[BULt];9-9,6959-6959[SIL]	((((((((((((.((..((((((&))))))--)).))))))))))))	AGGUGGAGAAGAUGAACAAGGAA&UUCCUU--UCUUCUUCUUCGCUU	2	0.999999861744563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8270_c0_g1_6958_TPlot.pdf
TRINITY_DN8278_c0_g1:2144	si_a547	TRINITY_DN8278_c0_g1	2130	2153	2144	-26.90	-17.60	0.654275092936803	7.5	1-4,2153-2150;7-17,2147-2137;18-21,2133-2130	5-6,2149-2148[SIL];x-x,2136-2134[BULt]	((((...(((((((((((..((((&))))..)))))))))))---))))	AGAUCUCAAAGAAAUAGAGGGAAU&GUUCAAUCUAUUUCUUU---AUCU	4	0.9999970577487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN8278_c0_g1_2144_TPlot.pdf
TRINITY_DN827_c0_g1:1025	si_a315	TRINITY_DN827_c0_g1	1014	1032	1025	-27.00	-17.56	0.65037037037037	11.5	1-4,1032-1029;10-21,1025-1014	5-9,1028-1026[AILq]	((((((((((((...--((((&)))).....))))))))))))	AGGAAGUCAUGGUAU--UCCA&UGGAUUUAUCCAUGAUUUUUU	4	0.999999967983427	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN827_c0_g1_1025_TPlot.pdf
TRINITY_DN827_c0_g1:879	si_s41	TRINITY_DN827_c0_g1	868	888	879	-25.00	-16.50	0.66	7	1-13,888-876;16-20,873-869	14-15,875-874[SIL];21-21,868-868[UP3]	.(((((..(((((((((((((&)))))))))))))..))))).	GGAGAUGAGAUUGUUGGAGAU&AUCUUUAAUAAUUGGAUUUCA	2	0.992299301143276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN827_c0_g1_879_TPlot.pdf
TRINITY_DN8282_c0_g1:103	si_s75	TRINITY_DN8282_c0_g1	92	112	103	-24.00	-16.40	0.683333333333333	6.5	1-9,112-104;11-12,102-101;14-20,99-93	10-10,103-103[SIL];13-13,100-100[SIL];21-21,92-92[UP3]	.(((((((.((.(((((((((&))))))))).)).))))))).	UGAAAGGGUAGUGAAAAGAUA&UAUUUUUUUUCUUUCCUUUCU	1	0.593664821676825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8282_c0_g1_103_TPlot.pdf
TRINITY_DN8283_c0_g1:1399	si_s525	TRINITY_DN8283_c0_g1	1388	1408	1399	-24.00	-16.30	0.679166666666667	9.5	4-6,1405-1403;8-19,1401-1390	1-3,1408-1406[UP5];7-7,1402-1402[SIL];20-21,1389-1388[UP3]	..((((((((((((.(((...&...))).))))))))))))..	AACAAGAAUGAUUUGGAAAAA&UAAUUCGAAAUCAUUUUUGAU	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN8283_c0_g1_1399_TPlot.pdf
TRINITY_DN8283_c0_g1:1401	si_s523	TRINITY_DN8283_c0_g1	1390	1410	1401	-24.50	-16.30	0.66530612244898	11.5	6-8,1405-1403;10-21,1401-1390	1-5,1410-1406[UP5];9-9,1402-1402[SIL]	((((((((((((.(((.....&.....))).))))))))))))	CAAGAAUGAUUUGGAAAAACU&CUUAAUUCGAAAUCAUUUUUG	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s523_TRINITY_DN8283_c0_g1_1401_TPlot.pdf
TRINITY_DN8285_c0_g1:268	si_s131	TRINITY_DN8285_c0_g1	257	277	268	-26.70	-17.40	0.651685393258427	8.5	4-12,274-266;14-20,264-258	1-3,277-275[UP5];13-13,265-265[SIL];21-21,257-257[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	GUUUUGGUAGAUUCAGCUAGU&AAGAGUUGAAUCAAUCAAAAA	4	0.977588791402782	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN8285_c0_g1_268_TPlot.pdf
TRINITY_DN8287_c0_g1:2064	si_s442	TRINITY_DN8287_c0_g1	2054	2073	2064	-23.80	-15.70	0.659663865546218	5	1-10,2073-2064;12-19,2063-2056	11-11,x-x[BULq];20-21,2055-2054[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	AAUUGUUAUA-AUGAUAUGUA&UACAUAUUAUAUAUAACAACA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s442_TRINITY_DN8287_c0_g1_2064_TPlot.pdf
TRINITY_DN8287_c0_g1:3699	si_s76	TRINITY_DN8287_c0_g1	3688	3708	3699	-23.60	-15.50	0.656779661016949	18	10-21,3699-3688	1-9,3708-3700[UP5]	((((((((((((.........&.........))))))))))))	GAGGAAGGAAAGUUUGUCGCU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8287_c0_g1_3699_TPlot.pdf
TRINITY_DN8287_c0_g1:3860	si_s80	TRINITY_DN8287_c0_g1	3845	3869	3860	-28.20	-19.10	0.677304964539007	9.5	3-13,3867-3857;14-20,3852-3846	1-2,3869-3868[UP5];x-x,3856-3853[BULt];21-21,3845-3845[UP3]	.(((((((....(((((((((((..&..)))))))))))----))))))).	CAAGAAGAGCUGGAGGAAAGGAACA&UUUUUCUUUCCUU----UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8287_c0_g1_3860_TPlot.pdf
TRINITY_DN8287_c0_g1:3861	si_s79	TRINITY_DN8287_c0_g1	3846	3870	3861	-26.20	-19.10	0.729007633587786	10.5	4-14,3867-3857;15-21,3852-3846	1-3,3870-3868[UP5];x-x,3856-3853[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	AAGAAGAGCUGGAGGAAAGGAACAU&UUUUUUCUUUCCUU----UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8287_c0_g1_3861_TPlot.pdf
TRINITY_DN8287_c0_g1:3862	si_s78	TRINITY_DN8287_c0_g1	3847	3871	3862	-26.20	-18.30	0.698473282442748	12.5	5-15,3867-3857;16-21,3852-3847	1-4,3871-3868[UP5];x-x,3856-3853[BULt]	((((((....(((((((((((....&....)))))))))))----))))))	AGAAGAGCUGGAGGAAAGGAACAUA&UUUUUUUCUUUCCUU----UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8287_c0_g1_3862_TPlot.pdf
TRINITY_DN8287_c0_g1:3903	si_s86	TRINITY_DN8287_c0_g1	3889	3917	3903	-32.90	-21.80	0.662613981762918	16	1-8,3917-3910;9-17,3904-3896;18-21,3892-3889	x-x,3909-3905[BULt];x-x,3895-3893[BULt]	((((...(((((((((.....((((((((&))))))))-----)))))))))---))))	GGCGGAAGAGAAGAAGCAAAAAGAGGAGA&UUUCCUUU-----CUUCUUCUU---CGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN8287_c0_g1_3903_TPlot.pdf
TRINITY_DN8287_c0_g1:4095	si_a352	TRINITY_DN8287_c0_g1	4084	4104	4095	-22.50	-15.40	0.684444444444444	9	5-12,4100-4093;14-21,4091-4084	1-4,4104-4101[UP5];13-13,4092-4092[SIL]	((((((((.((((((((....&....)))))))).))))))))	GAUCAGGAAAGAAUUAAACGA&AAUAUUAAUUCUAUUUUGAUC	4	0.997997482355738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN8287_c0_g1_4095_TPlot.pdf
TRINITY_DN8288_c0_g1:2101	si_s612	TRINITY_DN8288_c0_g1	2090	2110	2101	-28.20	-18.70	0.663120567375887	10.5	1-8,2110-2103;11-19,2100-2092	9-10,2102-2101[SIL];20-21,2091-2090[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	AGUGCUUGGGUCAAGGAAGGA&UCUUUUUUAAAUCCAAGCGAU	4	0.982141219925999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN8288_c0_g1_2101_TPlot.pdf
TRINITY_DN8288_c0_g1:2102	si_s611	TRINITY_DN8288_c0_g1	2091	2111	2102	-28.20	-18.70	0.663120567375887	10	2-9,2110-2103;12-20,2100-2092	1-1,2111-2111[UP5];10-11,2102-2101[SIL];21-21,2091-2091[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	GUGCUUGGGUCAAGGAAGGAG&AUCUUUUUUAAAUCCAAGCGA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN8288_c0_g1_2102_TPlot.pdf
TRINITY_DN8288_c0_g1:2103	si_s610	TRINITY_DN8288_c0_g1	2092	2112	2103	-27.20	-18.50	0.680147058823529	11	3-10,2110-2103;13-21,2100-2092	1-2,2112-2111[UP5];11-12,2102-2101[SIL]	(((((((((..((((((((..&..))))))))..)))))))))	UGCUUGGGUCAAGGAAGGAGA&AAUCUUUUUUAAAUCCAAGCG	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s610_TRINITY_DN8288_c0_g1_2103_TPlot.pdf
TRINITY_DN8288_c0_g1:2105	si_a331	TRINITY_DN8288_c0_g1	2094	2114	2105	-30.60	-20.10	0.656862745098039	8.5	2-6,2113-2109;8-14,2107-2101;16-20,2099-2095	1-1,2114-2114[UP5];7-7,2108-2108[SIL];15-15,2100-2100[SIL];21-21,2094-2094[UP3]	.(((((.(((((((.(((((.&.))))).))))))).))))).	CUUGGGUCAAGGAAGGAGAGC&UUUUUUAUUCCUUGUCCCGAA	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN8288_c0_g1_2105_TPlot.pdf
TRINITY_DN8288_c0_g1:2112	si_a498	TRINITY_DN8288_c0_g1	2101	2122	2112	-33.50	-22.80	0.680597014925373	9.5	2-7,2121-2116;9-11,2113-2111;13-21,2109-2101	1-1,2122-2122[UP5];8-8,2115-2114[AILt];12-12,2110-2110[SIL]	(((((((((.(((..((((((.&.))))))-.))).)))))))))	CAAGGAAGGAGAGCCAGCGACG&UGUCGUU-UUUCGUCUUCCUUG	2	0.99998434353007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN8288_c0_g1_2112_TPlot.pdf
TRINITY_DN8288_c0_g1:2184	si_s89	TRINITY_DN8288_c0_g1	2172	2195	2184	-35.30	-23.10	0.654390934844193	8	1-4,2195-2192;5-15,2189-2179;17-17,2177-2177;19-21,2174-2172	x-x,2191-2190[BULt];16-16,2178-2178[SIL];18-18,2176-2175[AILt]	(((..(.(((((((((((..((((&))))--))))))))))).)-.)))	CGACUGGGAAGAAGAAGGGCAAGG&CCUU--UCUUCUUCUUCGC-UUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8288_c0_g1_2184_TPlot.pdf
TRINITY_DN8288_c0_g1:2185	si_s85	TRINITY_DN8288_c0_g1	2171	2195	2185	-33.80	-23.10	0.683431952662722	8.5	1-4,2195-2192;5-17,2190-2178;18-20,2174-2172	x-x,2191-2191[BULt];x-x,2177-2175[BULt];21-21,2171-2171[UP3]	.(((...(((((((((((((.((((&))))-)))))))))))))---))).	ACGACUGGGAAGAAGAAGGGCAAGG&CUUU-CCUUUCUUCUUCU---UCGC	3	0.99999999999213	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8288_c0_g1_2185_TPlot.pdf
TRINITY_DN8288_c0_g1:2188	si_s82	TRINITY_DN8288_c0_g1	2177	2198	2188	-28.90	-23.50	0.813148788927336	8	3-7,2196-2192;8-21,2190-2177	1-2,2198-2197[UP5];x-x,2191-2191[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	GGGAAGAAGAAGGGCAAGGAUG&UUUCUUU-CCUUUCUUCUUCUU	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN8288_c0_g1_2188_TPlot.pdf
TRINITY_DN8288_c0_g1:2194	si_s77	TRINITY_DN8288_c0_g1	2182	2203	2194	-25.50	-16.60	0.650980392156863	12.5	4-6,2200-2198;8-12,2196-2192;13-21,2190-2182	1-3,2203-2201[UP5];7-7,2197-2197[SIL];x-x,2191-2191[BULt]	(((((((((.(((((.(((...&...))).)))))-)))))))))	GAAGAAGGGCAAGGAUGAGUCA&UUUUUUUUCUUU-CCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8288_c0_g1_2194_TPlot.pdf
TRINITY_DN8288_c0_g1:2453	si_s533	TRINITY_DN8288_c0_g1	2441	2462	2453	-28.80	-19.60	0.680555555555556	6.5	2-12,2461-2451;14-14,2449-2449;15-20,2447-2442	1-1,2462-2462[UP5];13-13,2450-2450[SIL];x-x,2448-2448[BULt];21-21,2441-2441[UP3]	.((((((.(.(((((((((((.&.))))))))))).)-)))))).	CUGGUCGAGCUCAAGGAUGAUG&AAUCAUUUUUGAUC-CGAUCAA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s533_TRINITY_DN8288_c0_g1_2453_TPlot.pdf
TRINITY_DN8288_c0_g1:2617	si_s69	TRINITY_DN8288_c0_g1	2606	2629	2617	-23.40	-16.70	0.713675213675214	14.5	3-7,2627-2623;8-21,2619-2606	1-2,2629-2628[UP5];x-x,2622-2620[BULt]	((((((((((((((...(((((..&..)))))---))))))))))))))	GAGGGAGAAGAGAUUACGGAGGAA&AACUUCU---AUUUUUUUUCUUUC	2	0.999999997753378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8288_c0_g1_2617_TPlot.pdf
TRINITY_DN8288_c0_g1:2619	si_s81	TRINITY_DN8288_c0_g1	2608	2631	2619	-28.90	-18.94	0.655363321799308	13	1-9,2631-2623;11-21,2618-2608	10-10,2622-2619[AILt]	(((((((((((....(((((((((&)))))))))---.)))))))))))	GGGAGAAGAGAUUACGGAGGAAGA&UUUUCUUUC---CUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN8288_c0_g1_2619_TPlot.pdf
TRINITY_DN8288_c0_g1:2781	si_s896	TRINITY_DN8288_c0_g1	2768	2790	2781	-31.60	-21.10	0.667721518987342	9.5	3-14,2788-2777;15-20,2774-2769	1-2,2790-2789[UP5];x-x,2776-2775[BULt];21-21,2768-2768[UP3]	.((((((..((((((((((((..&..))))))))))))--)))))).	GGAGAUUUCGAAGAGGAGGUCGA&UAGGCUUUCUCUUC--AAUUUCA	2	0.998395044015175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN8288_c0_g1_2781_TPlot.pdf
TRINITY_DN8288_c0_g1:2782	si_s895	TRINITY_DN8288_c0_g1	2769	2791	2782	-31.10	-20.70	0.665594855305466	10.5	4-15,2788-2777;16-21,2774-2769	1-3,2791-2789[UP5];x-x,2776-2775[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	GAGAUUUCGAAGAGGAGGUCGAC&AUAGGCUUUCUCUUC--AAUUUC	2	0.998867299997873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN8288_c0_g1_2782_TPlot.pdf
TRINITY_DN8289_c0_g1:20	si_a556	TRINITY_DN8289_c0_g1	9	31	20	-33.40	-25.20	0.754491017964072	8	1-8,31-24;9-17,21-13;19-20,11-10	x-x,23-22[BULt];18-18,12-12[SIL];21-21,9-9[UP3]	.((.(((((((((..((((((((&))))))))--))))))))).)).	GUCUCGGGGAGAUCGGAAGAGAU&AUUUCUUU--AUCUCCCCGUGAA	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN8289_c0_g1_20_TPlot.pdf
TRINITY_DN8289_c0_g2:1326	si_s69	TRINITY_DN8289_c0_g2	1315	1335	1326	-23.40	-16.00	0.683760683760684	10	4-8,1332-1328;10-21,1326-1315	1-3,1335-1333[UP5];9-9,1327-1327[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAGAGAAGAAAACUGGAGACC&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8289_c0_g2_1326_TPlot.pdf
TRINITY_DN8289_c0_g2:250	si_a758	TRINITY_DN8289_c0_g2	239	259	250	-34.00	-22.40	0.658823529411765	9.5	2-10,258-250;13-19,247-241	1-1,259-259[UP5];11-12,249-248[SIL];20-21,240-239[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	CUAUCAGAAUACCGGAGGAGC&CCUCCUUUGGGUUUUUGAUUG	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN8289_c0_g2_250_TPlot.pdf
TRINITY_DN8289_c0_g2:923	si_s91	TRINITY_DN8289_c0_g2	912	933	923	-34.70	-23.30	0.671469740634006	9	1-8,933-926;9-12,924-921;14-20,919-913	x-x,925-925[BULt];13-13,920-920[SIL];21-21,912-912[UP3]	.(((((((.((((.((((((((&))))))))-)))).))))))).	GCCGGAGCAGAGACGGAGGAGG&UUUCUUCU-UCUUCGCUUCGGA	3	0.999999999998563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN8289_c0_g2_923_TPlot.pdf
TRINITY_DN8289_c0_g2:924	si_s90	TRINITY_DN8289_c0_g2	913	934	924	-35.30	-26.20	0.742209631728045	8	1-9,934-926;10-13,924-921;15-21,919-913	x-x,925-925[BULt];14-14,920-920[SIL]	(((((((.((((.(((((((((&)))))))))-)))).)))))))	CCGGAGCAGAGACGGAGGAGGG&CUUUCUUCU-UCUUCGCUUCGG	3	0.994153667335956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN8289_c0_g2_924_TPlot.pdf
TRINITY_DN8289_c0_g2:926	si_s88	TRINITY_DN8289_c0_g2	915	935	926	-34.80	-24.80	0.71264367816092	7	1-10,935-926;12-15,924-921;17-21,919-915	11-11,925-925[SIL];16-16,920-920[SIL]	(((((.((((.((((((((((&)))))))))).)))).)))))	GGAGCAGAGACGGAGGAGGGA&UCCUUUCUUCUUCUUCGCUUC	4	0.999999320523381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN8289_c0_g2_926_TPlot.pdf
TRINITY_DN8289_c0_g2:927	si_s91	TRINITY_DN8289_c0_g2	912	936	927	-34.70	-23.30	0.671469740634006	13.5	2-11,935-926;12-13,922-921;14-20,919-913	1-1,936-936[UP5];x-x,925-923[BULt];x-x,920-920[BULt];21-21,912-912[UP3]	.(((((((.((...((((((((((.&.))))))))))---))-))))))).	GCCGGAGCAGAGACGGAGGAGGGAC&UUUCUUCUUCU---UC-GCUUCGGA	4	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN8289_c0_g2_927_TPlot.pdf
TRINITY_DN8289_c0_g2:995	si_a360	TRINITY_DN8289_c0_g2	977	1004	995	-29.10	-19.00	0.652920962199313	13	2-13,1003-992;14-18,984-980	1-1,1004-1004[UP5];x-x,991-985[BULt];19-21,979-977[UP3]	...(((((.......((((((((((((.&.))))))))))))-------)))))...	UCCGAUCCACACUGAGAUCGAAAUGGAC&UUCUAUUUUGAUC-------GGAUCAAA	2	0.991906221495494	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a360_TRINITY_DN8289_c0_g2_995_TPlot.pdf
TRINITY_DN8289_c0_g2:996	si_a359	TRINITY_DN8289_c0_g2	978	1005	996	-29.20	-19.00	0.650684931506849	14	3-14,1003-992;15-19,984-980	1-2,1005-1004[UP5];x-x,991-985[BULt];20-21,979-978[UP3]	..(((((.......((((((((((((..&..))))))))))))-------)))))..	CCGAUCCACACUGAGAUCGAAAUGGACU&AUUCUAUUUUGAUC-------GGAUCAA	3	0.999861834042607	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a359_TRINITY_DN8289_c0_g2_996_TPlot.pdf
TRINITY_DN8295_c0_g1:131	si_a141	TRINITY_DN8295_c0_g1	120	140	131	-23.80	-16.30	0.684873949579832	15.5	8-20,133-121	1-7,140-134[UP5];21-21,120-120[UP3]	.(((((((((((((.......&.......))))))))))))).	GAAAACGACGACGAAGAUGAC&UAAUUAAUCGUUGUUGUUUUA	4	0.999999829576798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN8295_c0_g1_131_TPlot.pdf
TRINITY_DN8297_c0_g1:154	si_a442	TRINITY_DN8297_c0_g1	143	163	154	-29.30	-21.10	0.720136518771331	7	2-11,162-153;13-21,151-143	1-1,163-163[UP5];12-12,152-152[SIL]	(((((((((.((((((((((.&.)))))))))).)))))))))	CAGCAGUUAGUUUAUGUCCAU&UUGGAUAUGAGAUAAUUGUUG	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a442_TRINITY_DN8297_c0_g1_154_TPlot.pdf
TRINITY_DN8298_c0_g1:1096	si_a751	TRINITY_DN8298_c0_g1	1086	1104	1096	-37.20	-24.70	0.663978494623656	6.5	1-2,1104-1103;4-4,1102-1102;6-12,1100-1094;15-21,1092-1086	3-3,x-x[BULq];5-5,1101-1101[SIL];13-14,1093-1093[AILq]	(((((((.-(((((((.(-((&)).).)))))))..)))))))	GAACCCAU-GGAGGUUGA-GG&CCAUGAACCUCCUUUGGGUUU	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a751_TRINITY_DN8298_c0_g1_1096_TPlot.pdf
TRINITY_DN8298_c0_g1:1108	si_s806	TRINITY_DN8298_c0_g1	1095	1117	1108	-28.60	-19.70	0.688811188811189	11	4-17,1114-1101;18-21,1098-1095	1-3,1117-1115[UP5];x-x,1100-1099[BULt]	((((..((((((((((((((...&...))))))))))))))--))))	GAGGUUGAGGGUGAUGAAGACUA&UUAUCUUCGUUACCUUU--UCUU	4	0.999999641686001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN8298_c0_g1_1108_TPlot.pdf
TRINITY_DN8298_c0_g1:1111	si_s803	TRINITY_DN8298_c0_g1	1100	1120	1111	-26.00	-18.40	0.707692307692308	14.5	7-20,1114-1101	1-6,1120-1115[UP5];21-21,1100-1100[UP3]	.((((((((((((((......&......)))))))))))))).	UGAGGGUGAUGAAGACUAUUC&AUUUUAUCUUCGUUACCUUUU	4	0.999995070517503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8298_c0_g1_1111_TPlot.pdf
TRINITY_DN8298_c0_g1:1112	si_s802	TRINITY_DN8298_c0_g1	1101	1121	1112	-26.40	-18.40	0.696969696969697	15	8-21,1114-1101	1-7,1121-1115[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGGUGAUGAAGACUAUUCU&UAUUUUAUCUUCGUUACCUUU	4	0.999980346173202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8298_c0_g1_1112_TPlot.pdf
TRINITY_DN8298_c0_g1:164	si_a473	TRINITY_DN8298_c0_g1	149	173	164	-23.00	-15.50	0.673913043478261	9	1-14,173-160;15-20,155-150	x-x,159-156[BULt];21-21,149-149[UP3]	.((((((....((((((((((((((&))))))))))))))----)))))).	AUGUGUGGACAACAGUGAUUACAUG&UAUGUAAUUAUUGU----UAUAUAG	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a473_TRINITY_DN8298_c0_g1_164_TPlot.pdf
TRINITY_DN8299_c0_g1:2332	si_a503	TRINITY_DN8299_c0_g1	2321	2341	2332	-32.10	-21.20	0.660436137071651	7.5	2-16,2340-2326	1-1,2341-2341[UP5];17-21,2325-2321[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CCUGAUAAGGAAGACGAAGAU&UUUUUCGUCUUCCUUGGAAUG	3	0.999999992323359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN8299_c0_g1_2332_TPlot.pdf
TRINITY_DN8299_c0_g1:2333	si_a502	TRINITY_DN8299_c0_g1	2322	2342	2333	-32.10	-21.20	0.660436137071651	8.5	3-17,2340-2326	1-2,2342-2341[UP5];18-21,2325-2322[UP3]	....(((((((((((((((..&..)))))))))))))))....	CUGAUAAGGAAGACGAAGAUA&GUUUUUCGUCUUCCUUGGAAU	4	0.999999999999741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN8299_c0_g1_2333_TPlot.pdf
TRINITY_DN8299_c0_g1:2334	si_s806	TRINITY_DN8299_c0_g1	2322	2343	2334	-28.60	-18.60	0.65034965034965	8	1-11,2343-2333;13-16,2330-2327;18-19,2325-2324	12-12,2332-2331[AILt];17-17,2326-2326[SIL];20-21,2323-2322[UP3]	..((.((((..(((((((((((&)))))))))))-.)))).))..	CUGAUAAGGAAGACGAAGAUAA&UUAUCUUCGUU-ACCUUUUCUU	2	0.999999999656971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN8299_c0_g1_2334_TPlot.pdf
TRINITY_DN8299_c0_g1:2335	si_s805	TRINITY_DN8299_c0_g1	2323	2344	2335	-28.60	-18.80	0.657342657342657	7	2-12,2343-2333;14-17,2330-2327;19-20,2325-2324	1-1,2344-2344[UP5];13-13,2332-2331[AILt];18-18,2326-2326[SIL];21-21,2323-2323[UP3]	.((.((((..(((((((((((.&.)))))))))))-.)))).)).	UGAUAAGGAAGACGAAGAUAAG&UUUAUCUUCGUU-ACCUUUUCU	2	0.999999948279345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN8299_c0_g1_2335_TPlot.pdf
TRINITY_DN8299_c0_g1:2336	si_s804	TRINITY_DN8299_c0_g1	2324	2345	2336	-27.90	-19.90	0.71326164874552	4.5	1-13,2345-2333;15-18,2330-2327;20-21,2325-2324	14-14,2332-2331[AILt];19-19,2326-2326[SIL]	((.((((..(((((((((((((&)))))))))))))-.)))).))	GAUAAGGAAGACGAAGAUAAGA&UUUUAUCUUCGUU-ACCUUUUC	2	0.991386537167641	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN8299_c0_g1_2336_TPlot.pdf
TRINITY_DN8299_c0_g1:2337	si_s803	TRINITY_DN8299_c0_g1	2325	2346	2337	-26.00	-19.20	0.738461538461538	5.5	1-14,2346-2333;16-19,2330-2327	15-15,2332-2331[AILt];20-21,2326-2325[UP3]	..((((..((((((((((((((&))))))))))))))-.))))..	AUAAGGAAGACGAAGAUAAGAU&AUUUUAUCUUCGUU-ACCUUUU	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8299_c0_g1_2337_TPlot.pdf
TRINITY_DN8299_c0_g1:2338	si_s802	TRINITY_DN8299_c0_g1	2326	2347	2338	-26.40	-19.20	0.727272727272727	5.5	2-15,2346-2333;17-20,2330-2327	1-1,2347-2347[UP5];16-16,2332-2331[AILt];21-21,2326-2326[UP3]	.((((..((((((((((((((.&.))))))))))))))-.)))).	UAAGGAAGACGAAGAUAAGAUC&UAUUUUAUCUUCGUU-ACCUUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8299_c0_g1_2338_TPlot.pdf
TRINITY_DN8299_c0_g1:2339	si_s801	TRINITY_DN8299_c0_g1	2327	2348	2339	-28.20	-19.20	0.680851063829787	6.5	3-16,2346-2333;18-21,2330-2327	1-2,2348-2347[UP5];17-17,2332-2331[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	AAGGAAGACGAAGAUAAGAUCA&GUAUUUUAUCUUCGUU-ACCUU	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN8299_c0_g1_2339_TPlot.pdf
TRINITY_DN8299_c0_g1:2460	si_s315	TRINITY_DN8299_c0_g1	2449	2468	2460	-31.60	-20.70	0.65506329113924	7	2-4,2467-2465;6-18,2464-2452	1-1,2468-2468[UP5];5-5,x-x[BULq];19-21,2451-2449[UP3]	...(((((((((((((-(((.&.))).)))))))))))))...	CGAUAGCGAGAAGGAC-GAAA&AUUCUGUCCUUCUUGUUACAA	2	0.99991597500299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN8299_c0_g1_2460_TPlot.pdf
TRINITY_DN8299_c0_g1:2461	si_s314	TRINITY_DN8299_c0_g1	2450	2469	2461	-31.50	-20.70	0.657142857142857	8	3-5,2467-2465;7-19,2464-2452	1-2,2469-2468[UP5];6-6,x-x[BULq];20-21,2451-2450[UP3]	..(((((((((((((-(((..&..))).)))))))))))))..	GAUAGCGAGAAGGAC-GAAAA&AAUUCUGUCCUUCUUGUUACA	2	0.9998987283439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN8299_c0_g1_2461_TPlot.pdf
TRINITY_DN8299_c0_g1:2462	si_s313	TRINITY_DN8299_c0_g1	2451	2470	2462	-30.80	-20.70	0.672077922077922	9	4-6,2467-2465;8-20,2464-2452	1-3,2470-2468[UP5];7-7,x-x[BULq];21-21,2451-2451[UP3]	.(((((((((((((-(((...&...))).))))))))))))).	AUAGCGAGAAGGAC-GAAAAA&AAAUUCUGUCCUUCUUGUUAC	2	0.999220248733987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN8299_c0_g1_2462_TPlot.pdf
TRINITY_DN8299_c0_g1:2694	si_s79	TRINITY_DN8299_c0_g1	2681	2703	2694	-26.20	-17.10	0.652671755725191	9.5	2-12,2702-2692;13-17,2690-2686;18-19,2684-2683	1-1,2703-2703[UP5];x-x,2691-2691[BULt];x-x,2685-2685[BULt];20-21,2682-2681[UP3]	..((.(((((.(((((((((((.&.)))))))))))-)))))-))..	ACGAUGGAAAGGGAGAGAGAAGG&UUUUUUCUUUCC-UUUCU-UCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8299_c0_g1_2694_TPlot.pdf
TRINITY_DN8299_c0_g1:2695	si_s72	TRINITY_DN8299_c0_g1	2684	2704	2695	-24.10	-17.50	0.726141078838174	9.5	1-4,2704-2701;6-19,2699-2686	5-5,2700-2700[SIL];20-21,2685-2684[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AUGGAAAGGGAGAGAGAAGGA&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999999445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8299_c0_g1_2695_TPlot.pdf
TRINITY_DN8299_c0_g1:2696	si_s71	TRINITY_DN8299_c0_g1	2685	2705	2696	-25.70	-17.60	0.684824902723736	9	2-5,2704-2701;7-20,2699-2686	1-1,2705-2705[UP5];6-6,2700-2700[SIL];21-21,2685-2685[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UGGAAAGGGAGAGAGAAGGAC&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8299_c0_g1_2696_TPlot.pdf
TRINITY_DN8299_c0_g1:2697	si_s76	TRINITY_DN8299_c0_g1	2685	2706	2697	-23.60	-18.00	0.76271186440678	9.5	3-15,2704-2692;16-20,2690-2686	1-2,2706-2705[UP5];x-x,2691-2691[BULt];21-21,2685-2685[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UGGAAAGGGAGAGAGAAGGACU&AUUUUUUUUCUUUCC-UUUCUU	2	0.999999992392381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8299_c0_g1_2697_TPlot.pdf
TRINITY_DN8299_c0_g1:2698	si_s75	TRINITY_DN8299_c0_g1	2686	2707	2698	-24.00	-18.00	0.75	10	4-16,2704-2692;17-21,2690-2686	1-3,2707-2705[UP5];x-x,2691-2691[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GGAAAGGGAGAGAGAAGGACUC&UAUUUUUUUUCUUUCC-UUUCU	4	0.999999999987448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8299_c0_g1_2698_TPlot.pdf
TRINITY_DN8299_c0_g1:3146	si_a413	TRINITY_DN8299_c0_g1	3135	3155	3146	-18.40	-13.40	0.728260869565218	5	1-6,3155-3150;8-19,3148-3137	7-7,3149-3149[SIL];20-21,3136-3135[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	UAAUUUAUUUAAAUCUAGACA&UGUUUAUAUUUAAAUAAAUAU	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN8299_c0_g1_3146_TPlot.pdf
TRINITY_DN8299_c0_g1:3149	si_a410	TRINITY_DN8299_c0_g1	3138	3158	3149	-17.80	-12.10	0.679775280898876	8	4-9,3155-3150;11-21,3148-3138	1-3,3158-3156[UP5];10-10,3149-3149[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UUUAUUUAAAUCUAGACAUUA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999910795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8299_c0_g1_3149_TPlot.pdf
TRINITY_DN829_c0_g1:620	si_s244	TRINITY_DN829_c0_g1	609	629	620	-33.80	-22.50	0.665680473372781	13	6-19,624-611	1-5,629-625[UP5];20-21,610-609[UP3]	..((((((((((((((.....&.....))))))))))))))..	GAAUCGGGAGAUGCUUCAAAC&UCAAUAGGCAUUUCCCGAUAU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN829_c0_g1_620_TPlot.pdf
TRINITY_DN82_c0_g1:608	si_s71	TRINITY_DN82_c0_g1	597	617	608	-25.70	-17.60	0.684824902723736	6	1-15,617-603;17-19,601-599	16-16,602-602[SIL];20-21,598-597[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UUGAGUGGAAGAAAAUGGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN82_c0_g1_608_TPlot.pdf
TRINITY_DN82_c0_g1:609	si_s70	TRINITY_DN82_c0_g1	598	618	609	-25.80	-17.60	0.682170542635659	6	2-16,617-603;18-20,601-599	1-1,618-618[UP5];17-17,602-602[SIL];21-21,598-598[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UGAGUGGAAGAAAAUGGAAGA&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999946304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN82_c0_g1_609_TPlot.pdf
TRINITY_DN82_c0_g1:610	si_s69	TRINITY_DN82_c0_g1	599	619	610	-23.40	-17.60	0.752136752136752	6.5	3-17,617-603;19-21,601-599	1-2,619-618[UP5];18-18,602-602[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	GAGUGGAAGAAAAUGGAAGAU&AACUUCUAUUUUUUUUCUUUC	3	0.999999931658372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN82_c0_g1_610_TPlot.pdf
TRINITY_DN82_c0_g1:611	si_s68	TRINITY_DN82_c0_g1	600	620	611	-23.10	-16.10	0.696969696969697	10	4-18,617-603	1-3,620-618[UP5];19-21,602-600[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGUGGAAGAAAAUGGAAGAUU&CAACUUCUAUUUUUUUUCUUU	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN82_c0_g1_611_TPlot.pdf
TRINITY_DN8301_c0_g1:2338	si_a356	TRINITY_DN8301_c0_g1	2328	2347	2338	-26.90	-18.70	0.695167286245353	5	1-7,2347-2341;9-15,2339-2333;17-21,2332-2328	8-8,2340-2340[SIL];16-16,x-x[BULq]	(((((-(((((((.(((((((&))))))).))))))).)))))	AUCCG-UCAAAAUUGAGUUGA&UUAAUUCUAUUUUGAUCGGAU	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN8301_c0_g1_2338_TPlot.pdf
TRINITY_DN8301_c0_g1:2339	si_a355	TRINITY_DN8301_c0_g1	2329	2348	2339	-26.80	-17.50	0.652985074626866	6	2-8,2347-2341;10-16,2339-2333;18-21,2332-2329	1-1,2348-2348[UP5];9-9,2340-2340[SIL];17-17,x-x[BULq]	((((-(((((((.(((((((.&.))))))).))))))).))))	UCCG-UCAAAAUUGAGUUGAA&AUUAAUUCUAUUUUGAUCGGA	2	0.994143829972238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN8301_c0_g1_2339_TPlot.pdf
TRINITY_DN8301_c0_g1:3380	si_a638	TRINITY_DN8301_c0_g1	3369	3389	3380	-24.40	-16.40	0.672131147540984	7	2-15,3388-3375;17-20,3373-3370	1-1,3389-3389[UP5];16-16,3374-3374[SIL];21-21,3369-3369[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AAUAUAACUUAAGAGGAUCGU&UCGAUUUUUUUGAGUAAUAUA	3	0.999987578410017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN8301_c0_g1_3380_TPlot.pdf
TRINITY_DN8305_c0_g1:3081	si_s732	TRINITY_DN8305_c0_g1	3071	3090	3081	-34.40	-23.60	0.686046511627907	8.5	3-15,3088-3076;19-21,3073-3071	1-2,3090-3089[UP5];16-18,3075-3074[AILq]	(((..-(((((((((((((..&..)))))))))))))...)))	GUCGG-UCACCUGUCUGGAGC&UAUCUAGACGGGUGAAUAGAU	4	0.377974541914962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN8305_c0_g1_3081_TPlot.pdf
TRINITY_DN8305_c0_g1:3084	si_s729	TRINITY_DN8305_c0_g1	3073	3093	3084	-32.10	-22.20	0.691588785046729	13.5	6-18,3088-3076	1-5,3093-3089[UP5];19-21,3075-3073[UP3]	...(((((((((((((.....&.....)))))))))))))...	CGGUCACCUGUCUGGAGCUGC&UAUUAUCUAGACGGGUGAAUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN8305_c0_g1_3084_TPlot.pdf
TRINITY_DN8305_c0_g1:3086	si_s727	TRINITY_DN8305_c0_g1	3075	3095	3086	-33.80	-22.20	0.656804733727811	15.5	8-20,3088-3076	1-7,3095-3089[UP5];21-21,3075-3075[UP3]	.(((((((((((((.......&.......))))))))))))).	GUCACCUGUCUGGAGCUGCCG&GAUAUUAUCUAGACGGGUGAA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s727_TRINITY_DN8305_c0_g1_3086_TPlot.pdf
TRINITY_DN8306_c0_g1:1205	si_a760	TRINITY_DN8306_c0_g1	1194	1214	1205	-31.10	-20.70	0.665594855305466	8	1-9,1214-1206;11-13,1204-1202;16-21,1199-1194	10-10,1205-1205[SIL];14-15,1201-1200[SIL]	((((((..(((.(((((((((&))))))))).)))..))))))	GUCAGUGCGAGCCCCAAGGGG&UCCUUUGGGUUUUUGAUUGAU	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN8306_c0_g1_1205_TPlot.pdf
TRINITY_DN8307_c0_g1:3719	si_a70	TRINITY_DN8307_c0_g1	3708	3728	3719	-23.90	-16.20	0.677824267782427	7.5	2-7,3727-3722;9-18,3720-3711	1-1,3728-3728[UP5];8-8,3721-3721[SIL];19-21,3710-3708[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	AAGGGAAAACAAUAUGAGAGC&UCUUUCAAAUUGUUUUUCAUU	3	0.999999993337631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8307_c0_g1_3719_TPlot.pdf
TRINITY_DN8307_c0_g1:4443	si_a21	TRINITY_DN8307_c0_g1	4432	4454	4443	-24.30	-16.88	0.694650205761317	14	1-8,4454-4447;11-19,4442-4434	9-10,4446-4443[AILt];20-21,4433-4432[UP3]	..(((((((((....((((((((&))))))))--..)))))))))..	AGGGAACUGAGUUCUUGGAUAGG&CCUAUUUA--UUUUUAGUUCUAA	2	0.988531686919518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN8307_c0_g1_4443_TPlot.pdf
TRINITY_DN8307_c0_g1:4444	si_a20	TRINITY_DN8307_c0_g1	4433	4455	4444	-26.70	-18.68	0.699625468164794	13.5	1-9,4455-4447;12-20,4442-4434	10-11,4446-4443[AILt];21-21,4433-4433[UP3]	.(((((((((....(((((((((&)))))))))--..))))))))).	GGGAACUGAGUUCUUGGAUAGGU&GCCUAUUUA--UUUUUAGUUCUA	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN8307_c0_g1_4444_TPlot.pdf
TRINITY_DN8307_c0_g1:4447	si_a19	TRINITY_DN8307_c0_g1	4434	4456	4447	-27.00	-18.48	0.684444444444444	13.5	2-10,4455-4447;13-21,4442-4434	1-1,4456-4456[UP5];11-12,4446-4443[AILt]	(((((((((....(((((((((.&.)))))))))--..)))))))))	GGAACUGAGUUCUUGGAUAGGUC&AGCCUAUUUA--UUUUUAGUUCU	3	0.999619818562662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN8307_c0_g1_4447_TPlot.pdf
TRINITY_DN8307_c0_g1:4459	si_a408	TRINITY_DN8307_c0_g1	4447	4468	4459	-20.10	-13.40	0.666666666666667	9	1-12,4468-4457;13-17,4455-4451	x-x,4456-4456[BULt];18-21,4450-4447[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	UGGAUAGGUCGUAGACAAAACA&UGUUUUGUUUAU-AUUUAAAUA	3	0.999999999995712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN8307_c0_g1_4459_TPlot.pdf
TRINITY_DN8307_c0_g1:4460	si_a407	TRINITY_DN8307_c0_g1	4448	4469	4460	-19.80	-13.80	0.696969696969697	7	1-13,4469-4457;14-18,4455-4451	x-x,4456-4456[BULt];19-21,4450-4448[UP3]	...(((((.(((((((((((((&)))))))))))))-)))))...	GGAUAGGUCGUAGACAAAACAG&UUGUUUUGUUUAU-AUUUAAAU	3	0.999999999608459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8307_c0_g1_4460_TPlot.pdf
TRINITY_DN8307_c0_g1:4461	si_a406	TRINITY_DN8307_c0_g1	4449	4470	4461	-19.80	-13.80	0.696969696969697	7.5	2-14,4469-4457;15-19,4455-4451	1-1,4470-4470[UP5];x-x,4456-4456[BULt];20-21,4450-4449[UP3]	..(((((.(((((((((((((.&.)))))))))))))-)))))..	GAUAGGUCGUAGACAAAACAGG&AUUGUUUUGUUUAU-AUUUAAA	2	0.999999893543778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8307_c0_g1_4461_TPlot.pdf
TRINITY_DN8307_c0_g1:4462	si_a405	TRINITY_DN8307_c0_g1	4450	4471	4462	-19.80	-13.80	0.696969696969697	8.5	3-15,4469-4457;16-20,4455-4451	1-2,4471-4470[UP5];x-x,4456-4456[BULt];21-21,4450-4450[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	AUAGGUCGUAGACAAAACAGGA&AAUUGUUUUGUUUAU-AUUUAA	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8307_c0_g1_4462_TPlot.pdf
TRINITY_DN8308_c0_g1:556	si_a407	TRINITY_DN8308_c0_g1	545	566	556	-19.80	-13.60	0.686868686868687	9	1-5,566-562;6-17,560-549	x-x,561-561[BULt];18-21,548-545[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	CGAAAAGUGUAAGCAAGGACAA&UUGUU-UUGUUUAUAUUUAAAU	4	0.999999999998197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8308_c0_g1_556_TPlot.pdf
TRINITY_DN8309_c0_g1:452	si_a410	TRINITY_DN8309_c0_g1	440	461	452	-17.80	-11.70	0.657303370786517	6	2-14,460-448;16-19,445-442	1-1,461-461[UP5];15-15,447-446[AILt];20-21,441-440[UP3]	..((((..(((((((((((((.&.)))))))))))))-.))))..	GGUAUUGAAAAUAUAAACAGAC&UUUUGUUUAUAUUU-AAAUAAA	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8309_c0_g1_452_TPlot.pdf
TRINITY_DN8309_c0_g1:614	si_a317	TRINITY_DN8309_c0_g1	595	623	614	-24.30	-15.80	0.650205761316872	17.5	1-10,623-614;11-17,605-599;19-21,597-595	x-x,613-606[BULt];18-18,598-598[SIL]	(((.(((((((........((((((((((&))))))))))--------))))))).)))	UAAUAAAGUCAACUUCAAUUGGAUAAAUC&GAUUUAUCCA--------UGAUUUUUUUA	4	0.999999999995797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN8309_c0_g1_614_TPlot.pdf
TRINITY_DN830_c0_g1:2020	si_a752	TRINITY_DN830_c0_g1	2009	2029	2020	-34.80	-24.20	0.695402298850575	4	2-16,2028-2014;18-21,2012-2009	1-1,2029-2029[UP5];17-17,2013-2013[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	AAAAGCUGAAGGAGGUUUAUA&CAUGAACCUCCUUUGGGUUUU	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN830_c0_g1_2020_TPlot.pdf
TRINITY_DN830_c0_g1:2542	si_s81	TRINITY_DN830_c0_g1	2525	2551	2542	-28.90	-20.40	0.705882352941176	11	1-12,2551-2540;13-17,2534-2530;18-21,2528-2525	x-x,2539-2535[BULt];x-x,2529-2529[BULt]	((((.(((((.....((((((((((((&))))))))))))-----)))))-))))	AGAAGGAAGACGCCAAAGGAAAGAAAA&UUUUCUUUCCUU-----UCUUC-UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN830_c0_g1_2542_TPlot.pdf
TRINITY_DN830_c0_g1:2544	si_s79	TRINITY_DN830_c0_g1	2528	2553	2544	-26.20	-19.50	0.744274809160305	8.5	3-14,2551-2540;15-21,2534-2528	1-2,2553-2552[UP5];x-x,2539-2535[BULt]	(((((((.....((((((((((((..&..))))))))))))-----)))))))	AGGAAGACGCCAAAGGAAAGAAAACU&UUUUUUCUUUCCUU-----UCUUCUU	4	0.999999999999858	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN830_c0_g1_2544_TPlot.pdf
TRINITY_DN830_c0_g1:2683	si_s72	TRINITY_DN830_c0_g1	2671	2692	2683	-24.10	-16.40	0.680497925311203	6	1-5,2692-2688;7-13,2686-2680;14-20,2678-2672	6-6,2687-2687[SIL];x-x,2679-2679[BULt];21-21,2671-2671[UP3]	.(((((((.(((((((.(((((&))))).)))))))-))))))).	CAGGAAAGCAGAAAAACUAGGA&UUCUAUUUUUUUU-CUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN830_c0_g1_2683_TPlot.pdf
TRINITY_DN830_c0_g1:3078	si_s89	TRINITY_DN830_c0_g1	3067	3094	3078	-35.30	-23.20	0.657223796033994	17.5	1-7,3094-3088;8-19,3080-3069	x-x,3087-3081[BULt];20-21,3068-3067[UP3]	..((((((((((((.......(((((((&)))))))-------))))))))))))..	GAAAGUGAAGAAGAAAGUUCUGGAAAGG&CCUUUCU-------UCUUCUUCGCUUCG	2	0.999999999945631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN830_c0_g1_3078_TPlot.pdf
TRINITY_DN830_c0_g1:3089	si_s85	TRINITY_DN830_c0_g1	3071	3098	3089	-33.80	-23.40	0.692307692307692	17.5	1-1,3098-3098;3-11,3096-3088;12-21,3080-3071	2-2,3097-3097[SIL];x-x,3087-3081[BULt]	((((((((((.......(((((((((.(&).)))))))))-------))))))))))	GUGAAGAAGAAAGUUCUGGAAAGGAACG&CUUUCCUUUCU-------UCUUCUUCGC	4	0.999999999816279	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN830_c0_g1_3089_TPlot.pdf
TRINITY_DN830_c0_g1:3090	si_s84	TRINITY_DN830_c0_g1	3072	3100	3090	-32.30	-21.40	0.662538699690402	18.5	1-3,3100-3098;4-12,3096-3088;13-21,3080-3072	x-x,3097-3097[BULt];x-x,3087-3081[BULt]	(((((((((.......(((((((((.(((&)))-)))))))))-------)))))))))	UGAAGAAGAAAGUUCUGGAAAGGAACGGA&UCU-UUCCUUUCU-------UCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN830_c0_g1_3090_TPlot.pdf
TRINITY_DN830_c0_g1:3099	si_s75	TRINITY_DN830_c0_g1	3088	3108	3099	-24.00	-17.90	0.745833333333333	8.5	3-11,3106-3098;13-21,3096-3088	1-2,3108-3107[UP5];12-12,3097-3097[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GGAAAGGAACGGAAAGGAAGA&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999991163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN830_c0_g1_3099_TPlot.pdf
TRINITY_DN830_c0_g1:3100	si_s79	TRINITY_DN830_c0_g1	3087	3109	3100	-26.20	-18.00	0.687022900763359	7	1-12,3109-3098;13-18,3096-3091;19-20,3089-3088	x-x,3097-3097[BULt];x-x,3090-3090[BULt];21-21,3087-3087[UP3]	.((.((((((.((((((((((((&))))))))))))-))))))-)).	UGGAAAGGAACGGAAAGGAAGAA&UUUUUUCUUUCC-UUUCUU-CUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN830_c0_g1_3100_TPlot.pdf
TRINITY_DN830_c0_g1:3108	si_a792	TRINITY_DN830_c0_g1	3097	3117	3108	-27.60	-18.10	0.655797101449275	8	2-8,3116-3110;10-15,3108-3103;18-21,3100-3097	1-1,3117-3117[UP5];9-9,3109-3109[SIL];16-17,3102-3101[SIL]	((((..((((((.(((((((.&.))))))).))))))..))))	CGGAAAGGAAGAAAGAGAGAC&AUUUUUCUAUUUUCCAAUCCG	3	0.99999966852903	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN830_c0_g1_3108_TPlot.pdf
TRINITY_DN830_c0_g1:3109	si_s70	TRINITY_DN830_c0_g1	3098	3117	3109	-25.80	-17.70	0.686046511627907	8.5	3-6,3115-3112;8-21,3111-3098	1-2,3117-3116[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAAAGGAAGAAAG-AGAGAC&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN830_c0_g1_3109_TPlot.pdf
TRINITY_DN830_c0_g1:3546	si_s89	TRINITY_DN830_c0_g1	3535	3562	3546	-35.30	-23.20	0.657223796033994	17.5	1-7,3562-3556;8-19,3548-3537	x-x,3555-3549[BULt];20-21,3536-3535[UP3]	..((((((((((((.......(((((((&)))))))-------))))))))))))..	GAAAGUGAAGAAGAAAGUUCUGGAAAGG&CCUUUCU-------UCUUCUUCGCUUCG	2	0.999999999899952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN830_c0_g1_3546_TPlot.pdf
TRINITY_DN830_c0_g1:3547	si_s88	TRINITY_DN830_c0_g1	3536	3563	3547	-34.80	-24.80	0.71264367816092	16.5	1-8,3563-3556;9-20,3548-3537	x-x,3555-3549[BULt];21-21,3536-3536[UP3]	.((((((((((((.......((((((((&))))))))-------)))))))))))).	AAAGUGAAGAAGAAAGUUCUGGAAAGGA&UCCUUUCU-------UCUUCUUCGCUUC	3	0.999998660078045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN830_c0_g1_3547_TPlot.pdf
TRINITY_DN830_c0_g1:3558	si_s84	TRINITY_DN830_c0_g1	3540	3568	3558	-32.30	-21.40	0.662538699690402	18.5	1-3,3568-3566;4-12,3564-3556;13-21,3548-3540	x-x,3565-3565[BULt];x-x,3555-3549[BULt]	(((((((((.......(((((((((.(((&)))-)))))))))-------)))))))))	UGAAGAAGAAAGUUCUGGAAAGGAACGGA&UCU-UUCCUUUCU-------UCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN830_c0_g1_3558_TPlot.pdf
TRINITY_DN830_c0_g1:3568	si_s79	TRINITY_DN830_c0_g1	3555	3577	3568	-26.20	-18.00	0.687022900763359	7	1-12,3577-3566;13-18,3564-3559;19-20,3557-3556	x-x,3565-3565[BULt];x-x,3558-3558[BULt];21-21,3555-3555[UP3]	.((.((((((.((((((((((((&))))))))))))-))))))-)).	UGGAAAGGAACGGAAAGGAAGAA&UUUUUUCUUUCC-UUUCUU-CUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN830_c0_g1_3568_TPlot.pdf
TRINITY_DN830_c0_g1:3576	si_a792	TRINITY_DN830_c0_g1	3565	3585	3576	-27.60	-18.10	0.655797101449275	8	2-8,3584-3578;10-15,3576-3571;18-21,3568-3565	1-1,3585-3585[UP5];9-9,3577-3577[SIL];16-17,3570-3569[SIL]	((((..((((((.(((((((.&.))))))).))))))..))))	CGGAAAGGAAGAAAGAGAGAC&AUUUUUCUAUUUUCCAAUCCG	3	0.999999661750396	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN830_c0_g1_3576_TPlot.pdf
TRINITY_DN830_c0_g1:3577	si_s70	TRINITY_DN830_c0_g1	3566	3585	3577	-25.80	-17.70	0.686046511627907	8.5	3-6,3583-3580;8-21,3579-3566	1-2,3585-3584[UP5];7-7,x-x[BULq]	((((((((((((((-((((..&..)))).))))))))))))))	GGAAAGGAAGAAAG-AGAGAC&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN830_c0_g1_3577_TPlot.pdf
TRINITY_DN830_c0_g1:3708	si_s89	TRINITY_DN830_c0_g1	3697	3724	3708	-35.30	-23.20	0.657223796033994	17.5	1-7,3724-3718;8-19,3710-3699	x-x,3717-3711[BULt];20-21,3698-3697[UP3]	..((((((((((((.......(((((((&)))))))-------))))))))))))..	GAAAGUGAAGAAGAAAGUUCUGGAAAGG&CCUUUCU-------UCUUCUUCGCUUCG	2	0.999999999957612	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN830_c0_g1_3708_TPlot.pdf
TRINITY_DN830_c0_g1:3709	si_s88	TRINITY_DN830_c0_g1	3698	3725	3709	-34.80	-24.80	0.71264367816092	16.5	1-8,3725-3718;9-20,3710-3699	x-x,3717-3711[BULt];21-21,3698-3698[UP3]	.((((((((((((.......((((((((&))))))))-------)))))))))))).	AAAGUGAAGAAGAAAGUUCUGGAAAGGA&UCCUUUCU-------UCUUCUUCGCUUC	2	0.999806552470596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN830_c0_g1_3709_TPlot.pdf
TRINITY_DN830_c0_g1:3710	si_s87	TRINITY_DN830_c0_g1	3699	3726	3710	-32.90	-25.50	0.775075987841945	15.5	1-9,3726-3718;10-21,3710-3699	x-x,3717-3711[BULt]	((((((((((((.......(((((((((&)))))))))-------))))))))))))	AAGUGAAGAAGAAAGUUCUGGAAAGGAA&UUCCUUUCU-------UCUUCUUCGCUU	4	0.990774791611253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN830_c0_g1_3710_TPlot.pdf
TRINITY_DN830_c0_g1:3712	si_s82	TRINITY_DN830_c0_g1	3701	3726	3712	-28.90	-21.00	0.726643598615917	13	1-9,3726-3718;10-19,3712-3703	x-x,3717-3713[BULt];20-21,3702-3701[UP3]	..((((((((((.....(((((((((&)))))))))-----))))))))))..	GUGAAGAAGAAAGUUCUGGAAAGGAA&UUUCUUUCC-----UUUCUUCUUCUU	3	0.999999999999361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN830_c0_g1_3712_TPlot.pdf
TRINITY_DN830_c0_g1:3718	si_s86	TRINITY_DN830_c0_g1	3700	3727	3718	-32.90	-24.70	0.750759878419453	16.5	2-10,3726-3718;11-21,3710-3700	1-1,3727-3727[UP5];x-x,3717-3711[BULt]	(((((((((((.......(((((((((.&.)))))))))-------)))))))))))	AGUGAAGAAGAAAGUUCUGGAAAGGAAC&UUUCCUUUCU-------UCUUCUUCGCU	4	0.999631482924068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN830_c0_g1_3718_TPlot.pdf
TRINITY_DN830_c0_g1:3721	si_s83	TRINITY_DN830_c0_g1	3703	3731	3721	-30.90	-21.60	0.699029126213592	10.5	1-4,3731-3728;5-13,3726-3718;14-21,3710-3703	x-x,3727-3727[BULt];x-x,3717-3711[BULt]	((((((((.......(((((((((.((((&))))-)))))))))-------))))))))	GAAGAAGAAAGUUCUGGAAAGGAACGGAA&UUCU-UUCCUUUCU-------UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN830_c0_g1_3721_TPlot.pdf
TRINITY_DN830_c0_g1:3729	si_a789	TRINITY_DN830_c0_g1	3715	3738	3729	-24.80	-16.34	0.658870967741935	13.5	1-11,3738-3728;13-19,3723-3717	12-12,3727-3724[AILt];20-21,3716-3715[UP3]	..(((((((....(((((((((((&)))))))))))---.)))))))..	UCUGGAAAGGAACGGAAAGGUAGA&UCUAUUUUUCU---AUUUUCCAAU	3	0.999999999999854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN830_c0_g1_3729_TPlot.pdf
TRINITY_DN830_c0_g1:3730	si_a788	TRINITY_DN830_c0_g1	3716	3739	3730	-24.80	-17.24	0.695161290322581	11.5	1-12,3739-3728;14-20,3723-3717	13-13,3727-3724[AILt];21-21,3716-3716[UP3]	.(((((((....((((((((((((&))))))))))))---.))))))).	CUGGAAAGGAACGGAAAGGUAGAA&UUCUAUUUUUCU---AUUUUCCAA	3	0.999999778889403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN830_c0_g1_3730_TPlot.pdf
TRINITY_DN830_c0_g1:3734	si_a784	TRINITY_DN830_c0_g1	3723	3744	3734	-24.70	-16.10	0.651821862348178	7.5	2-6,3743-3739;7-16,3737-3728;18-21,3726-3723	1-1,3744-3744[UP5];x-x,3738-3738[BULt];17-17,3727-3727[SIL]	((((.((((((((((.(((((.&.)))))-)))))))))).))))	GGAACGGAAAGGUAGAAAGAGA&ACUCUU-CUAUUUUUCUAUUUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN830_c0_g1_3734_TPlot.pdf
TRINITY_DN830_c0_g1:3737	si_s76	TRINITY_DN830_c0_g1	3727	3746	3737	-23.60	-16.10	0.682203389830509	9.5	3-11,3744-3736;14-20,3734-3728	1-2,3746-3745[UP5];12-13,3735-3735[AILq];21-21,3727-3727[UP3]	.(((((((.-(((((((((..&..)))))))))..))))))).	CGGAAAGGU-AGAAAGAGAGA&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN830_c0_g1_3737_TPlot.pdf
TRINITY_DN830_c0_g1:3738	si_s75	TRINITY_DN830_c0_g1	3728	3747	3738	-24.00	-16.10	0.670833333333333	9.5	4-12,3744-3736;15-21,3734-3728	1-3,3747-3745[UP5];13-14,3735-3735[AILq]	(((((((.-(((((((((...&...)))))))))..)))))))	GGAAAGGU-AGAAAGAGAGAC&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN830_c0_g1_3738_TPlot.pdf
TRINITY_DN830_c0_g1:3861	si_a494	TRINITY_DN830_c0_g1	3850	3872	3861	-29.50	-20.20	0.684745762711864	9.5	3-9,3870-3864;10-21,3861-3850	1-2,3872-3871[UP5];x-x,3863-3862[BULt]	((((((((((((..(((((((..&..)))))))--))))))))))))	GAAGAUGAAGAAACCGAUAUAGA&AAUAUGUCG--UUUUUCGUCUUC	3	0.999999774367657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN830_c0_g1_3861_TPlot.pdf
TRINITY_DN830_c0_g1:4338	si_a141	TRINITY_DN830_c0_g1	4327	4347	4338	-23.80	-16.10	0.676470588235294	16	7-18,4341-4330	1-6,4347-4342[UP5];19-21,4329-4327[UP3]	...((((((((((((......&......))))))))))))...	UCCGACAGCGACGAUGAAGAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999997811836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN830_c0_g1_4338_TPlot.pdf
TRINITY_DN830_c0_g1:4492	si_a757	TRINITY_DN830_c0_g1	4481	4502	4492	-33.10	-22.20	0.670694864048338	9	2-9,4501-4494;11-20,4491-4482	1-1,4502-4502[UP5];10-10,4493-4492[AILt];21-21,4481-4481[UP3]	.((((((((((..((((((((.&.))))))))-.)))))))))).	CGUUGAAAGCCGAAGAGGAGGA&ACCUCCUUU-GGGUUUUUGAUU	2	0.999926725936868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN830_c0_g1_4492_TPlot.pdf
TRINITY_DN830_c0_g1:4494	si_a756	TRINITY_DN830_c0_g1	4482	4503	4494	-33.10	-22.20	0.670694864048338	10	3-10,4501-4494;12-21,4491-4482	1-2,4503-4502[UP5];11-11,4493-4492[AILt]	((((((((((..((((((((..&..))))))))-.))))))))))	GUUGAAAGCCGAAGAGGAGGAA&AACCUCCUUU-GGGUUUUUGAU	4	0.999999864195165	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN830_c0_g1_4494_TPlot.pdf
TRINITY_DN830_c0_g1:4498	si_s88	TRINITY_DN830_c0_g1	4486	4508	4498	-34.80	-25.20	0.724137931034483	6	1-6,4508-4503;7-17,4501-4491;18-20,4489-4487	x-x,4502-4502[BULt];x-x,4490-4490[BULt];21-21,4486-4486[UP3]	.(((.(((((((((((.((((((&))))))-)))))))))))-))).	AAAGCCGAAGAGGAGGAAAAGGA&UCCUUU-CUUCUUCUUCG-CUUC	2	0.997836334218218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN830_c0_g1_4498_TPlot.pdf
TRINITY_DN830_c0_g1:4499	si_s87	TRINITY_DN830_c0_g1	4487	4509	4499	-32.90	-25.90	0.787234042553192	5	1-7,4509-4503;8-18,4501-4491;19-21,4489-4487	x-x,4502-4502[BULt];x-x,4490-4490[BULt]	(((.(((((((((((.(((((((&)))))))-)))))))))))-)))	AAGCCGAAGAGGAGGAAAAGGAA&UUCCUUU-CUUCUUCUUCG-CUU	2	0.863493604673943	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN830_c0_g1_4499_TPlot.pdf
TRINITY_DN830_c0_g1:4501	si_s85	TRINITY_DN830_c0_g1	4490	4516	4501	-33.80	-24.00	0.710059171597633	14.5	1-6,4516-4511;7-20,4504-4491	x-x,4510-4505[BULt];21-21,4490-4490[UP3]	.((((((((((((((......((((((&))))))------)))))))))))))).	CCGAAGAGGAGGAAAAGGAACGGAAAG&CUUUCC------UUUCUUCUUCUUCGC	3	0.999999471972144	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN830_c0_g1_4501_TPlot.pdf
TRINITY_DN830_c0_g1:4506	si_s81	TRINITY_DN830_c0_g1	4494	4516	4506	-28.90	-21.30	0.737024221453287	5.5	1-6,4516-4511;7-13,4509-4503;14-21,4501-4494	x-x,4510-4510[BULt];x-x,4502-4502[BULt]	((((((((.(((((((.((((((&))))))-)))))))-))))))))	AGAGGAGGAAAAGGAACGGAAAG&UUUUCU-UUCCUUU-CUUCUUCU	4	0.999999999986919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN830_c0_g1_4506_TPlot.pdf
TRINITY_DN830_c0_g1:5790	si_s91	TRINITY_DN830_c0_g1	5775	5799	5790	-34.70	-24.60	0.708933717579251	7	2-14,5798-5786;15-21,5781-5775	1-1,5799-5799[UP5];x-x,5785-5782[BULt]	(((((((....(((((((((((((.&.)))))))))))))----)))))))	UUCGGAGAGCACGAAGAAGAGGAAG&UUUCUUCUUCUUCG----CUUCGGA	4	0.99998465846649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN830_c0_g1_5790_TPlot.pdf
TRINITY_DN830_c0_g1:5799	si_s807	TRINITY_DN830_c0_g1	5787	5808	5799	-28.90	-21.10	0.730103806228374	9.5	3-10,5806-5799;12-20,5796-5788	1-2,5808-5807[UP5];11-11,5798-5797[AILt];21-21,5787-5787[UP3]	.(((((((((..((((((((..&..))))))))-.))))))))).	GAAGAAGAGGAAGACGAAGAGG&UAUCUUCGUU-ACCUUUUCUUA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN830_c0_g1_5799_TPlot.pdf
TRINITY_DN830_c0_g1:7827	si_a469	TRINITY_DN830_c0_g1	7816	7836	7827	-21.10	-13.80	0.654028436018957	15	7-19,7830-7818	1-6,7836-7831[UP5];20-21,7817-7816[UP3]	..(((((((((((((......&......)))))))))))))..	UAAGCAAUGAUUGCAAAUGAU&AUAAUAUGUAAUUAUUGUUAU	3	0.999999791918167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN830_c0_g1_7827_TPlot.pdf
TRINITY_DN830_c0_g1:8038	si_s51	TRINITY_DN830_c0_g1	8027	8047	8038	-30.70	-20.00	0.651465798045603	7.5	1-5,8047-8043;7-18,8041-8030	6-6,8042-8042[SIL];19-21,8029-8027[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AUCGCUAGCUUGAAGAUCAAU&AUUGGAUUUCAAGUUAGCAAC	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN830_c0_g1_8038_TPlot.pdf
TRINITY_DN830_c0_g1:8042	si_s47	TRINITY_DN830_c0_g1	8031	8051	8042	-26.30	-20.40	0.775665399239544	4.5	1-9,8051-8043;11-21,8041-8031	10-10,8042-8042[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	CUAGCUUGAAGAUCAAUUAUU&AAUAAUUGGAUUUCAAGUUAG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s47_TRINITY_DN830_c0_g1_8042_TPlot.pdf
TRINITY_DN830_c0_g1:8136	si_s21	TRINITY_DN830_c0_g1	8125	8144	8136	-27.40	-18.40	0.671532846715328	9	2-7,8143-8138;9-17,8137-8129	1-1,8144-8144[UP5];8-8,x-x[BULq];18-21,8128-8125[UP3]	....(((((((((-((((((.&.)))))).)))))))))....	CAACGUUGCAGUC-AUAUGGA&ACUAUAUUGAUUGCAACUAAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN830_c0_g1_8136_TPlot.pdf
TRINITY_DN8310_c1_g3:429	si_a410	TRINITY_DN8310_c1_g3	418	438	429	-17.80	-13.20	0.741573033707865	6.5	2-15,437-424;17-21,422-418	1-1,438-438[UP5];16-16,423-423[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	UUUGUAUGGAUAUGGGCAAAC&UUUUGUUUAUAUUUAAAUAAA	4	0.999454505964532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8310_c1_g3_429_TPlot.pdf
TRINITY_DN8313_c0_g1:627	si_a318	TRINITY_DN8313_c0_g1	616	637	627	-22.50	-15.00	0.666666666666667	12	6-8,632-630;9-21,628-616	1-5,637-633[UP5];x-x,629-629[BULt]	(((((((((((((.(((.....&.....)))-)))))))))))))	AUGAAGAAAUCAUAGGAAACGC&AUUUAUCC-AUGAUUUUUUUAU	2	0.999999981818934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN8313_c0_g1_627_TPlot.pdf
TRINITY_DN8316_c0_g1:2535	si_s629	TRINITY_DN8316_c0_g1	2524	2544	2535	-34.60	-24.40	0.705202312138728	6.5	1-1,2544-2544;3-12,2542-2533;14-20,2531-2525	2-2,2543-2543[SIL];13-13,2532-2532[SIL];21-21,2524-2524[UP3]	.(((((((.((((((((((.(&).)))))))))).))))))).	AAGACGCCAGCGAAAAGGUGG&CGAUCUUUUCGUAGGCGUUUG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN8316_c0_g1_2535_TPlot.pdf
TRINITY_DN8316_c0_g1:2536	si_s628	TRINITY_DN8316_c0_g1	2525	2545	2536	-35.40	-28.30	0.799435028248588	5	1-2,2545-2544;4-13,2542-2533;15-21,2531-2525	3-3,2543-2543[SIL];14-14,2532-2532[SIL]	(((((((.((((((((((.((&)).)))))))))).)))))))	AGACGCCAGCGAAAAGGUGGC&GCGAUCUUUUCGUAGGCGUUU	2	0.180563509220565	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN8316_c0_g1_2536_TPlot.pdf
TRINITY_DN8316_c0_g1:2540	si_s810	TRINITY_DN8316_c0_g1	2529	2549	2540	-27.90	-19.10	0.684587813620072	11	3-15,2547-2535	1-2,2549-2548[UP5];16-21,2534-2529[UP3]	......(((((((((((((..&..)))))))))))))......	GCCAGCGAAAAGGUGGCGAUC&CUUCGUUACCUUUUCUUAAUA	3	0.999985974189315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN8316_c0_g1_2540_TPlot.pdf
TRINITY_DN8316_c0_g1:2541	si_s809	TRINITY_DN8316_c0_g1	2530	2550	2541	-28.50	-19.10	0.670175438596491	12	4-16,2547-2535	1-3,2550-2548[UP5];17-21,2534-2530[UP3]	.....(((((((((((((...&...))))))))))))).....	CCAGCGAAAAGGUGGCGAUCA&UCUUCGUUACCUUUUCUUAAU	3	0.99999998894844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN8316_c0_g1_2541_TPlot.pdf
TRINITY_DN8316_c0_g1:2544	si_s806	TRINITY_DN8316_c0_g1	2533	2563	2544	-28.60	-20.00	0.699300699300699	26	1-6,2563-2558;7-19,2547-2535	x-x,2557-2548[BULt];20-21,2534-2533[UP3]	..(((((((((((((..........((((((&))))))----------)))))))))))))..	GCGAAAAGGUGGCGAUCAUCGUGUUGGAUGA&UUAUCU----------UCGUUACCUUUUCUU	4	0.999995733740282	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN8316_c0_g1_2544_TPlot.pdf
TRINITY_DN8316_c0_g1:7800	si_s878	TRINITY_DN8316_c0_g1	7786	7809	7800	-23.50	-16.10	0.685106382978724	7.5	3-14,7807-7796;15-21,7792-7786	1-2,7809-7808[UP5];x-x,7795-7793[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	CUGUUUAAAAUUUUUAGUUCUGUG&CUUAGAACUAAAAA---UAAAUAG	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s878_TRINITY_DN8316_c0_g1_7800_TPlot.pdf
TRINITY_DN8316_c0_g1:7967	si_s481	TRINITY_DN8316_c0_g1	7956	7976	7967	-23.00	-15.60	0.678260869565217	8.5	1-6,7976-7971;8-16,7969-7961	7-7,7970-7970[SIL];17-21,7960-7956[UP3]	.....(((((((((.((((((&)))))).))))))))).....	AAAAAGAAUAAGUAAAGGAUC&GAUCCUAUAUUUAUUUAAAUA	3	0.997648999876926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN8316_c0_g1_7967_TPlot.pdf
TRINITY_DN8316_c0_g1:7968	si_s480	TRINITY_DN8316_c0_g1	7957	7977	7968	-25.00	-16.70	0.668	8	1-7,7977-7971;9-17,7969-7961	8-8,7970-7970[SIL];18-21,7960-7957[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AAAAGAAUAAGUAAAGGAUCU&GGAUCCUAUAUUUAUUUAAAU	4	0.998560742340306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN8316_c0_g1_7968_TPlot.pdf
TRINITY_DN8316_c0_g1:7969	si_s479	TRINITY_DN8316_c0_g1	7958	7978	7969	-26.40	-18.80	0.712121212121212	7.5	1-8,7978-7971;10-18,7969-7961	9-9,7970-7970[SIL];19-21,7960-7958[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	AAAGAAUAAGUAAAGGAUCUG&CGGAUCCUAUAUUUAUUUAAA	3	0.865224149208587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN8316_c0_g1_7969_TPlot.pdf
TRINITY_DN8317_c0_g1:185	si_a787	TRINITY_DN8317_c0_g1	173	194	185	-26.30	-19.90	0.756653992395437	6	1-10,194-185;11-14,183-180;16-21,178-173	x-x,184-184[BULt];15-15,179-179[SIL]	((((((.((((.((((((((((&))))))))))-)))).))))))	UGGAAAUUAGGCAAAAUGGAGG&CUUCUAUUUU-UCUAUUUUCCA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN8317_c0_g1_185_TPlot.pdf
TRINITY_DN8317_c0_g1:186	si_a786	TRINITY_DN8317_c0_g1	174	195	186	-26.60	-20.10	0.755639097744361	6	1-11,195-185;12-15,183-180;17-21,178-174	x-x,184-184[BULt];16-16,179-179[SIL]	(((((.((((.(((((((((((&)))))))))))-)))).)))))	GGAAAUUAGGCAAAAUGGAGGA&UCUUCUAUUUU-UCUAUUUUCC	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN8317_c0_g1_186_TPlot.pdf
TRINITY_DN8321_c0_g1:1047	si_s33	TRINITY_DN8321_c0_g1	1036	1056	1047	-24.10	-16.10	0.66804979253112	9	1-12,1056-1045	13-21,1044-1036[UP3]	.........((((((((((((&)))))))))))).........	UAUAGGCGUAGAUUUAGUUGC&GCAACUAAAUCUUUAAUAAUU	3	0.95834301371459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN8321_c0_g1_1047_TPlot.pdf
TRINITY_DN8321_c0_g1:250	si_s10	TRINITY_DN8321_c0_g1	239	259	250	-23.80	-15.50	0.651260504201681	7	4-16,256-244;18-21,242-239	1-3,259-257[UP5];17-17,243-243[SIL]	((((.(((((((((((((...&...))))))))))))).))))	UCAAAAUAGUGAUAAUAAUUU&UACUUAUUAUUACUAUAUUGA	3	0.998932488498235	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN8321_c0_g1_250_TPlot.pdf
TRINITY_DN8321_c0_g1:664	si_a20	TRINITY_DN8321_c0_g1	652	673	664	-26.70	-21.00	0.786516853932584	5.5	1-13,673-661;16-21,657-652	14-15,660-658[AILt]	((((((...(((((((((((((&)))))))))))))-..))))))	UAGAGCAGCAAGAUAAAUGGGC&GCCUAUUUAUUUU-UAGUUCUA	2	0.345032105327541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN8321_c0_g1_664_TPlot.pdf
TRINITY_DN8321_c0_g1:666	si_a18	TRINITY_DN8321_c0_g1	654	675	666	-26.30	-18.50	0.703422053231939	8	3-15,673-661;18-21,657-654	1-2,675-674[UP5];16-17,660-658[AILt]	((((...(((((((((((((..&..)))))))))))))-..))))	GAGCAGCAAGAUAAAUGGGCAU&AAGCCUAUUUAUUUU-UAGUUC	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN8321_c0_g1_666_TPlot.pdf
TRINITY_DN8323_c1_g1:1310	si_s559	TRINITY_DN8323_c1_g1	1298	1319	1310	-27.80	-19.80	0.712230215827338	6	2-7,1318-1313;9-13,1311-1307;14-21,1305-1298	1-1,1319-1319[UP5];8-8,1312-1312[SIL];x-x,1306-1306[BULt]	((((((((.(((((.((((((.&.)))))).)))))-))))))))	CUUGUCCCUGGAAGGAUUAAUC&AAUUAAUAUUUUC-GGGACAAG	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s559_TRINITY_DN8323_c1_g1_1310_TPlot.pdf
TRINITY_DN8323_c1_g3:2163	si_a323	TRINITY_DN8323_c1_g3	2144	2172	2163	-26.80	-18.40	0.686567164179104	13.5	1-14,2172-2159;15-19,2150-2146	x-x,2158-2151[BULt];20-21,2145-2144[UP3]	..(((((........((((((((((((((&))))))))))))))--------)))))..	UUGGAAUCAGUAAAAGAAAAGGUCGUGGA&UCCAUGAUUUUUUU--------AUUCCUU	2	0.997889528026194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN8323_c1_g3_2163_TPlot.pdf
TRINITY_DN8323_c1_g3:2166	si_a320	TRINITY_DN8323_c1_g3	2155	2175	2166	-24.40	-16.20	0.663934426229508	12.5	4-17,2172-2159	1-3,2175-2173[UP5];18-21,2158-2155[UP3]	....((((((((((((((...&...))))))))))))))....	AAAAGAAAAGGUCGUGGAACU&UUAUCCAUGAUUUUUUUAUUC	3	0.999999916323541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN8323_c1_g3_2166_TPlot.pdf
TRINITY_DN8323_c1_g3:2167	si_a319	TRINITY_DN8323_c1_g3	2156	2176	2167	-22.40	-16.20	0.723214285714286	13	5-18,2172-2159	1-4,2176-2173[UP5];19-21,2158-2156[UP3]	...((((((((((((((....&....))))))))))))))...	AAAGAAAAGGUCGUGGAACUG&UUUAUCCAUGAUUUUUUUAUU	2	0.999060199882597	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN8323_c1_g3_2167_TPlot.pdf
TRINITY_DN8323_c1_g3:2168	si_a318	TRINITY_DN8323_c1_g3	2157	2177	2168	-22.50	-16.20	0.72	13.5	6-19,2172-2159	1-5,2177-2173[UP5];20-21,2158-2157[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAGAAAAGGUCGUGGAACUGU&AUUUAUCCAUGAUUUUUUUAU	4	0.999975840065604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN8323_c1_g3_2168_TPlot.pdf
TRINITY_DN8323_c1_g3:2169	si_a317	TRINITY_DN8323_c1_g3	2158	2178	2169	-24.30	-17.98	0.739917695473251	10.5	1-3,2178-2176;7-20,2172-2159	4-6,2175-2173[SIL];21-21,2158-2158[UP3]	.((((((((((((((...(((&)))...)))))))))))))).	AGAAAAGGUCGUGGAACUGUC&GAUUUAUCCAUGAUUUUUUUA	2	0.93367977964459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN8323_c1_g3_2169_TPlot.pdf
TRINITY_DN8323_c1_g3:2170	si_a316	TRINITY_DN8323_c1_g3	2159	2179	2170	-26.30	-17.48	0.664638783269962	10.5	2-4,2178-2176;8-21,2172-2159	1-1,2179-2179[UP5];5-7,2175-2173[SIL]	((((((((((((((...(((.&.)))...))))))))))))))	GAAAAGGUCGUGGAACUGUCA&GGAUUUAUCCAUGAUUUUUUU	4	0.999999939286455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN8323_c1_g3_2170_TPlot.pdf
TRINITY_DN8323_c1_g3:2847	si_a785	TRINITY_DN8323_c1_g3	2836	2856	2847	-25.90	-19.40	0.749034749034749	7.5	2-7,2855-2850;9-21,2848-2836	1-1,2856-2856[UP5];8-8,2849-2849[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	GAAAGUAGAGAAGCGGAAGGC&CUCUUCUAUUUUUCUAUUUUC	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN8323_c1_g3_2847_TPlot.pdf
TRINITY_DN8323_c1_g3:2920	si_a657	TRINITY_DN8323_c1_g3	2909	2929	2920	-33.80	-22.90	0.677514792899408	7	1-15,2929-2915;17-19,2913-2911	16-16,2914-2914[SIL];20-21,2910-2909[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UCCGAGAGGUAUUUCCUGGUG&UAUCGGGAAAUGCCUAUUGAU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a657_TRINITY_DN8323_c1_g3_2920_TPlot.pdf
TRINITY_DN8323_c1_g3:2922	si_a655	TRINITY_DN8323_c1_g3	2911	2931	2922	-33.20	-22.10	0.66566265060241	8	3-17,2929-2915;19-21,2913-2911	1-2,2931-2930[UP5];18-18,2914-2914[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	CGAGAGGUAUUUCCUGGUGAA&UAUAUCGGGAAAUGCCUAUUG	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a655_TRINITY_DN8323_c1_g3_2922_TPlot.pdf
TRINITY_DN8323_c1_g3:2925	si_a652	TRINITY_DN8323_c1_g3	2914	2934	2925	-31.90	-21.20	0.664576802507837	13.5	6-20,2929-2915	1-5,2934-2930[UP5];21-21,2914-2914[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GAGGUAUUUCCUGGUGAAAUA&UAAUAUAUCGGGAAAUGCCUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN8323_c1_g3_2925_TPlot.pdf
TRINITY_DN8323_c1_g3:3064	si_s308	TRINITY_DN8323_c1_g3	3053	3075	3064	-32.80	-21.42	0.653048780487805	16	1-4,3075-3072;10-19,3064-3055	5-9,3071-3065[AILt];20-21,3054-3053[UP3]	..((((((((((.......((((&))))--.....))))))))))..	UUGAAGGACAGAUGGUGUACGCA&UGCG--AAAAUUCUGUCCUUCUU	2	0.986348711242218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN8323_c1_g3_3064_TPlot.pdf
TRINITY_DN8323_c1_g3:3065	si_s307	TRINITY_DN8323_c1_g3	3054	3076	3065	-32.90	-21.82	0.66322188449848	15.5	1-5,3076-3072;11-20,3064-3055	6-10,3071-3065[AILt];21-21,3054-3054[UP3]	.((((((((((.......(((((&)))))--.....)))))))))).	UGAAGGACAGAUGGUGUACGCAG&UUGCG--AAAAUUCUGUCCUUCU	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN8323_c1_g3_3065_TPlot.pdf
TRINITY_DN8323_c1_g3:3066	si_s306	TRINITY_DN8323_c1_g3	3055	3077	3066	-32.30	-23.02	0.712693498452012	15	1-6,3077-3072;12-21,3064-3055	7-11,3071-3065[AILt]	((((((((((.......((((((&))))))--.....))))))))))	GAAGGACAGAUGGUGUACGCAGU&AUUGCG--AAAAUUCUGUCCUUC	3	0.597867542240155	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s306_TRINITY_DN8323_c1_g3_3066_TPlot.pdf
TRINITY_DN8323_c1_g3:3067	si_s305	TRINITY_DN8323_c1_g3	3056	3078	3067	-30.30	-20.22	0.667326732673267	16	2-7,3077-3072;13-21,3064-3056	1-1,3078-3078[UP5];8-12,3071-3065[AILt]	(((((((((.......((((((.&.))))))--.....)))))))))	AAGGACAGAUGGUGUACGCAGUA&AAUUGCG--AAAAUUCUGUCCUU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s305_TRINITY_DN8323_c1_g3_3067_TPlot.pdf
TRINITY_DN8323_c2_g1:585	si_s1	TRINITY_DN8323_c2_g1	574	594	585	-18.70	-14.10	0.754010695187166	5	2-7,593-588;9-21,586-574	1-1,594-594[UP5];8-8,587-587[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UAAUAAUAAGUAGAAUAAAGU&UUUUUAUAUUACUUAUUAUUA	4	0.987426704442108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN8323_c2_g1_585_TPlot.pdf
TRINITY_DN8325_c0_g1:433	si_s894	TRINITY_DN8325_c0_g1	422	442	433	-29.10	-20.30	0.697594501718213	11	3-16,440-427	1-2,442-441[UP5];17-21,426-422[UP3]	.....((((((((((((((..&..)))))))))))))).....	GCAGCGAAGAGGAAGUCUGGU&AAUAGGCUUUCUCUUCAAUUU	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN8325_c0_g1_433_TPlot.pdf
TRINITY_DN8325_c0_g1:435	si_s892	TRINITY_DN8325_c0_g1	424	444	435	-29.50	-20.30	0.688135593220339	13	5-18,440-427	1-4,444-441[UP5];19-21,426-424[UP3]	...((((((((((((((....&....))))))))))))))...	AGCGAAGAGGAAGUCUGGUGG&UAAAUAGGCUUUCUCUUCAAU	2	0.991169437441327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN8325_c0_g1_435_TPlot.pdf
TRINITY_DN8325_c0_g1:436	si_s891	TRINITY_DN8325_c0_g1	425	445	436	-29.60	-20.30	0.685810810810811	13.5	6-19,440-427	1-5,445-441[UP5];20-21,426-425[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCGAAGAGGAAGUCUGGUGGU&AUAAAUAGGCUUUCUCUUCAA	0	0.154307538004063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN8325_c0_g1_436_TPlot.pdf
TRINITY_DN8325_c0_g1:437	si_s890	TRINITY_DN8325_c0_g1	426	446	437	-29.50	-20.30	0.688135593220339	14.5	7-20,440-427	1-6,446-441[UP5];21-21,426-426[UP3]	.((((((((((((((......&......)))))))))))))).	CGAAGAGGAAGUCUGGUGGUG&AAUAAAUAGGCUUUCUCUUCA	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN8325_c0_g1_437_TPlot.pdf
TRINITY_DN8325_c0_g1:438	si_s889	TRINITY_DN8325_c0_g1	427	447	438	-28.80	-19.90	0.690972222222222	15.5	8-21,440-427	1-7,447-441[UP5]	((((((((((((((.......&.......))))))))))))))	GAAGAGGAAGUCUGGUGGUGU&AAAUAAAUAGGCUUUCUCUUC	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN8325_c0_g1_438_TPlot.pdf
TRINITY_DN8338_c2_g1:1455	si_a410	TRINITY_DN8338_c2_g1	1444	1464	1455	-17.80	-13.30	0.747191011235955	7.5	1-18,1464-1447	19-21,1446-1444[UP3]	...((((((((((((((((((&))))))))))))))))))...	CUGAUUUAGAUGUAAAUGGAA&UUUUGUUUAUAUUUAAAUAAA	4	0.997955716073328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8338_c2_g1_1455_TPlot.pdf
TRINITY_DN833_c0_g1:1230	si_a71	TRINITY_DN833_c0_g1	1219	1241	1230	-23.30	-16.76	0.71931330472103	12	1-6,1241-1236;10-21,1230-1219	7-9,1235-1231[AILt]	((((((((((((.....((((((&))))))--...))))))))))))	UGAUGAAGAACAUACGAUGGAAG&CUUUCA--AAUUGUUUUUCAUUA	4	0.999821068243679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN833_c0_g1_1230_TPlot.pdf
TRINITY_DN833_c0_g1:2229	si_a898	TRINITY_DN833_c0_g1	2218	2238	2229	-20.50	-13.80	0.673170731707317	6.5	1-7,2238-2232;9-18,2230-2221	8-8,2231-2231[SIL];19-21,2220-2218[UP3]	...((((((((((.(((((((&))))))).))))))))))...	GUAUAUAUUGCUUUUUAUUAU&GUAAUAAUAAGUAAUAUAAAA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN833_c0_g1_2229_TPlot.pdf
TRINITY_DN833_c0_g1:2231	si_a896	TRINITY_DN833_c0_g1	2220	2240	2231	-21.60	-14.40	0.666666666666667	5.5	2-9,2239-2232;11-20,2230-2221	1-1,2240-2240[UP5];10-10,2231-2231[SIL];21-21,2220-2220[UP3]	.((((((((((.((((((((.&.)))))))).)))))))))).	AUAUAUUGCUUUUUAUUAUUU&UAGUAAUAAUAAGUAAUAUAA	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN833_c0_g1_2231_TPlot.pdf
TRINITY_DN833_c0_g1:2232	si_a895	TRINITY_DN833_c0_g1	2221	2241	2232	-21.70	-14.20	0.654377880184332	6.5	3-10,2239-2232;12-21,2230-2221	1-2,2241-2240[UP5];11-11,2231-2231[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	UAUAUUGCUUUUUAUUAUUUA&AUAGUAAUAAUAAGUAAUAUA	2	0.983951203433408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN833_c0_g1_2232_TPlot.pdf
TRINITY_DN833_c1_g1:1062	si_a120	TRINITY_DN833_c1_g1	1051	1071	1062	-30.50	-21.18	0.694426229508197	9	1-6,1071-1066;10-20,1062-1052	7-9,1065-1063[SIL];21-21,1051-1051[UP3]	.(((((((((((...((((((&))))))...))))))))))).	AUAUUGCUAUAGCUAGAGCUC&GAGCUUGUUUUAUAGCAAUAG	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a120_TRINITY_DN833_c1_g1_1062_TPlot.pdf
TRINITY_DN833_c1_g1:1063	si_a119	TRINITY_DN833_c1_g1	1052	1072	1063	-30.30	-21.08	0.695709570957096	9	2-7,1071-1066;11-21,1062-1052	1-1,1072-1072[UP5];8-10,1065-1063[SIL]	(((((((((((...((((((.&.))))))...)))))))))))	UAUUGCUAUAGCUAGAGCUCA&CGAGCUUGUUUUAUAGCAAUA	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN833_c1_g1_1063_TPlot.pdf
TRINITY_DN833_c1_g1:3004	si_a393	TRINITY_DN833_c1_g1	2993	3013	3004	-22.70	-14.90	0.656387665198238	6	1-16,3013-2998	17-21,2997-2993[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAUAAAAUUUUAUAUUCUUAA&UUAAGAAUAUAGAAUUGUUUU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN833_c1_g1_3004_TPlot.pdf
TRINITY_DN833_c1_g1:3006	si_a391	TRINITY_DN833_c1_g1	2995	3015	3006	-22.80	-14.90	0.653508771929825	6.5	3-18,3013-2998	1-2,3015-3014[UP5];19-21,2997-2995[UP3]	...((((((((((((((((..&..))))))))))))))))...	UAAAAUUUUAUAUUCUUAAAA&AAUUAAGAAUAUAGAAUUGUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN833_c1_g1_3006_TPlot.pdf
TRINITY_DN8340_c0_g1:312	si_a477	TRINITY_DN8340_c0_g1	301	321	312	-21.50	-15.90	0.73953488372093	10.5	3-11,319-311;14-20,308-302	1-2,321-320[UP5];12-13,310-309[SIL];21-21,301-301[UP3]	.(((((((..(((((((((..&..)))))))))..))))))).	GGUUCUAUUGAGCAGUGAUGC&UAAUUAUUGUUAUAUAGAAUA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN8340_c0_g1_312_TPlot.pdf
TRINITY_DN8343_c0_g1:2855	si_s774	TRINITY_DN8343_c0_g1	2844	2864	2855	-24.70	-16.80	0.680161943319838	9	1-14,2864-2851	15-21,2850-2844[UP3]	.......((((((((((((((&)))))))))))))).......	UUCUAGCAGCGAUAGUGAUUA&UAAUUACUAUUGCUAUAAAAC	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s774_TRINITY_DN8343_c0_g1_2855_TPlot.pdf
TRINITY_DN8343_c0_g1:2949	si_s775	TRINITY_DN8343_c0_g1	2938	2958	2949	-25.00	-17.00	0.68	9	1-14,2958-2945	15-21,2944-2938[UP3]	.......((((((((((((((&)))))))))))))).......	UCACAAUUAGCGAUAGUGAUU&AAUUACUAUUGCUAUAAAACA	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN8343_c0_g1_2949_TPlot.pdf
TRINITY_DN834_c0_g1:1716	si_s312	TRINITY_DN834_c0_g1	1705	1725	1716	-29.00	-21.60	0.744827586206897	11	5-20,1721-1706	1-4,1725-1722[UP5];21-21,1705-1705[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGAUAAGAAGGAUAGGAAGGA&AAAAUUCUGUCCUUCUUGUUA	4	0.959220087096588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN834_c0_g1_1716_TPlot.pdf
TRINITY_DN834_c0_g1:1907	si_a788	TRINITY_DN834_c0_g1	1892	1916	1907	-24.80	-17.80	0.717741935483871	12	1-11,1916-1906;12-19,1901-1894	x-x,1905-1902[BULt];20-21,1893-1892[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	UCGGAAAAUAGGUCGAAAGAUAGGA&UUCUAUUUUUC----UAUUUUCCAA	2	0.997725890607938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN834_c0_g1_1907_TPlot.pdf
TRINITY_DN834_c0_g1:1926	si_s806	TRINITY_DN834_c0_g1	1913	1935	1926	-28.60	-19.50	0.681818181818182	12	4-10,1932-1926;11-21,1923-1913	1-3,1935-1933[UP5];x-x,1925-1924[BULt]	(((((((((((..(((((((...&...)))))))--)))))))))))	AGGAGAAGGUGAAAUGAAGAGUU&UUAUCUUCGU--UACCUUUUCUU	2	0.999986346763381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN834_c0_g1_1926_TPlot.pdf
TRINITY_DN8358_c0_g1:1321	si_s83	TRINITY_DN8358_c0_g1	1310	1330	1321	-30.90	-21.68	0.701618122977346	8	2-10,1329-1321;14-21,1317-1310	1-1,1330-1330[UP5];11-13,1320-1318[SIL]	((((((((...(((((((((.&.)))))))))...))))))))	GAAGAAGACCUGGGGAAAGAU&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8358_c0_g1_1321_TPlot.pdf
TRINITY_DN8358_c0_g1:391	si_a64	TRINITY_DN8358_c0_g1	381	400	391	-29.40	-21.10	0.717687074829932	5.5	1-14,400-387;16-18,386-384	15-15,x-x[BULq];19-21,383-381[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	AAUCAG-UUGAAAGAAGUGAG&CUCGCUUCUUUCAAAUUGUUU	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN8358_c0_g1_391_TPlot.pdf
TRINITY_DN8358_c0_g1:392	si_a63	TRINITY_DN8358_c0_g1	382	401	392	-30.20	-21.10	0.698675496688742	5.5	2-15,400-387;17-19,386-384	1-1,401-401[UP5];16-16,x-x[BULq];20-21,383-382[UP3]	..(((-((((((((((((((.&.)))))))))))))).)))..	AUCAG-UUGAAAGAAGUGAGA&ACUCGCUUCUUUCAAAUUGUU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN8358_c0_g1_392_TPlot.pdf
TRINITY_DN835_c1_g2:1243	si_a326	TRINITY_DN835_c1_g2	1234	1251	1243	-26.20	-17.24	0.658015267175572	9.5	1-9,1251-1243;14-21,1241-1234	10-13,1242-1242[AILq]	((((((((.---(((((((((&)))))))))....))))))))	GACAGGGAU---AAGAGUCAU&AUGAUUUUUUUAUUCCUUGUC	2	0.999999606697329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN835_c1_g2_1243_TPlot.pdf
TRINITY_DN835_c1_g2:1846	si_a487	TRINITY_DN835_c1_g2	1835	1855	1846	-24.80	-16.20	0.653225806451613	9.5	1-13,1855-1843;16-18,1840-1838	14-15,1842-1841[SIL];19-21,1837-1835[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	AGCAGCCUCGUGUUCUGUGUA&UAUAUAGAAUAUGUCGUUUUU	2	0.998041390635047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a487_TRINITY_DN835_c1_g2_1846_TPlot.pdf
TRINITY_DN835_c2_g1:36	si_a784	TRINITY_DN835_c2_g1	25	45	36	-24.70	-16.50	0.668016194331984	8	2-12,44-34;14-16,32-30	1-1,45-45[UP5];13-13,33-33[SIL];17-21,29-25[UP3]	.....(((.(((((((((((.&.))))))))))).))).....	GAGCAAGACAAAUAGAGGAGG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN835_c2_g1_36_TPlot.pdf
TRINITY_DN8367_c0_g1:2135	si_a567	TRINITY_DN8367_c0_g1	2124	2146	2135	-36.40	-28.00	0.769230769230769	9.5	3-7,2144-2140;8-21,2137-2124	1-2,2146-2145[UP5];x-x,2139-2138[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	CGGACAUGCGAUUCUUGCGGGAA&UCCCCGU--GAAUCGUAUGUUUG	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a567_TRINITY_DN8367_c0_g1_2135_TPlot.pdf
TRINITY_DN8369_c0_g1:1374	si_a783	TRINITY_DN8369_c0_g1	1361	1383	1374	-24.70	-17.20	0.696356275303644	7.5	3-15,1381-1369;16-20,1366-1362	1-2,1383-1382[UP5];x-x,1368-1367[BULt];21-21,1361-1361[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	UAAUAGCCGAAAAUGGAAGAGCA&AACUCUUCUAUUUUU--CUAUUU	1	0.214526022688198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8369_c0_g1_1374_TPlot.pdf
TRINITY_DN836_c0_g1:1640	si_a414	TRINITY_DN836_c0_g1	1629	1649	1640	-18.10	-11.90	0.657458563535912	8.5	1-15,1649-1635	16-21,1634-1629[UP3]	......(((((((((((((((&)))))))))))))))......	UUCCAAUAUUUAAAUGUGAAU&GUUUAUAUUUAAAUAAAUAUA	4	0.999999689894308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a414_TRINITY_DN836_c0_g1_1640_TPlot.pdf
TRINITY_DN836_c0_g1:1641	si_a413	TRINITY_DN836_c0_g1	1630	1650	1641	-18.40	-12.90	0.701086956521739	8	1-16,1650-1635	17-21,1634-1630[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCCAAUAUUUAAAUGUGAAUA&UGUUUAUAUUUAAAUAAAUAU	3	0.996475572389368	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN836_c0_g1_1641_TPlot.pdf
TRINITY_DN836_c0_g1:1642	si_a412	TRINITY_DN836_c0_g1	1631	1651	1642	-18.30	-13.60	0.743169398907104	7	1-17,1651-1635	18-21,1634-1631[UP3]	....(((((((((((((((((&)))))))))))))))))....	CCAAUAUUUAAAUGUGAAUAA&UUGUUUAUAUUUAAAUAAAUA	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN836_c0_g1_1642_TPlot.pdf
TRINITY_DN836_c0_g1:1643	si_a411	TRINITY_DN836_c0_g1	1632	1652	1643	-17.90	-13.80	0.770949720670391	7	2-18,1651-1635	1-1,1652-1652[UP5];19-21,1634-1632[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CAAUAUUUAAAUGUGAAUAAU&UUUGUUUAUAUUUAAAUAAAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN836_c0_g1_1643_TPlot.pdf
TRINITY_DN836_c0_g1:1644	si_a410	TRINITY_DN836_c0_g1	1633	1653	1644	-17.80	-13.80	0.775280898876405	8	3-19,1651-1635	1-2,1653-1652[UP5];20-21,1634-1633[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAUAUUUAAAUGUGAAUAAUA&UUUUGUUUAUAUUUAAAUAAA	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN836_c0_g1_1644_TPlot.pdf
TRINITY_DN836_c0_g1:1645	si_a409	TRINITY_DN836_c0_g1	1634	1654	1645	-19.50	-15.60	0.8	6	1-2,1654-1653;4-20,1651-1635	3-3,1652-1652[SIL];21-21,1634-1634[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	AUAUUUAAAUGUGAAUAAUAC&GUUUUGUUUAUAUUUAAAUAA	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN836_c0_g1_1645_TPlot.pdf
TRINITY_DN836_c0_g1:1646	si_a408	TRINITY_DN836_c0_g1	1635	1655	1646	-20.10	-16.20	0.805970149253731	5	1-3,1655-1653;5-21,1651-1635	4-4,1652-1652[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	UAUUUAAAUGUGAAUAAUACA&UGUUUUGUUUAUAUUUAAAUA	3	0.847818148017196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN836_c0_g1_1646_TPlot.pdf
TRINITY_DN836_c0_g1:1647	si_a407	TRINITY_DN836_c0_g1	1636	1656	1647	-19.80	-14.90	0.752525252525252	5.5	2-4,1655-1653;6-21,1651-1636	1-1,1656-1656[UP5];5-5,1652-1652[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AUUUAAAUGUGAAUAAUACAC&UUGUUUUGUUUAUAUUUAAAU	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN836_c0_g1_1647_TPlot.pdf
TRINITY_DN836_c0_g1:1648	si_a406	TRINITY_DN836_c0_g1	1637	1657	1648	-19.80	-13.90	0.702020202020202	7.5	3-5,1655-1653;7-21,1651-1637	1-2,1657-1656[UP5];6-6,1652-1652[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	UUUAAAUGUGAAUAAUACACU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999786269008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN836_c0_g1_1648_TPlot.pdf
TRINITY_DN836_c0_g1:1649	si_a405	TRINITY_DN836_c0_g1	1638	1658	1649	-19.80	-13.10	0.661616161616162	9	4-6,1655-1653;8-21,1651-1638	1-3,1658-1656[UP5];7-7,1652-1652[SIL]	((((((((((((((.(((...&...))).))))))))))))))	UUAAAUGUGAAUAAUACACUU&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN836_c0_g1_1649_TPlot.pdf
TRINITY_DN836_c0_g1:385	si_s165	TRINITY_DN836_c0_g1	368	394	385	-41.70	-30.74	0.737170263788969	10.5	1-13,394-382;16-21,373-368	14-15,381-374[AILt]	((((((........(((((((((((((&)))))))))))))------..))))))	GCAUCUCCAGACAAGCCCUUGGCCGUG&CAUGGCCAGGGGU------AAAGAUGC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s165_TRINITY_DN836_c0_g1_385_TPlot.pdf
TRINITY_DN836_c0_g1:391	si_s159	TRINITY_DN836_c0_g1	380	400	391	-42.60	-29.60	0.694835680751174	9	1-3,400-398;6-19,395-382	4-5,397-396[SIL];20-21,381-380[UP3]	..((((((((((((((..(((&)))..))))))))))))))..	AAGCCCUUGGCCGUGAUGUUC&GAGGUUCAUGGCCAGGGGUAA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s159_TRINITY_DN836_c0_g1_391_TPlot.pdf
TRINITY_DN8371_c0_g1:646	si_s79	TRINITY_DN8371_c0_g1	635	655	646	-26.20	-17.80	0.679389312977099	12	5-18,651-638	1-4,655-652[UP5];19-21,637-635[UP3]	...((((((((((((((....&....))))))))))))))...	UAAAAGAAAGGAAGGAGUGUU&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8371_c0_g1_646_TPlot.pdf
TRINITY_DN8372_c0_g1:124	si_a73	TRINITY_DN8372_c0_g1	113	133	124	-21.90	-15.00	0.684931506849315	11	1-4,133-130;7-21,127-113	5-6,129-128[SIL]	(((((((((((((((..((((&))))..)))))))))))))))	GAUGGUGGGAGGCGGGAUGAG&UUCAAAUUGUUUUUCAUUAUU	3	0.999999988016304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN8372_c0_g1_124_TPlot.pdf
TRINITY_DN8372_c0_g1:677	si_s71	TRINITY_DN8372_c0_g1	666	692	677	-25.70	-16.80	0.653696498054475	19.5	1-8,692-685;9-10,678-677;13-21,674-666	x-x,684-679[BULt];11-12,676-675[SIL]	(((((((((..((......((((((((&))))))))------))..)))))))))	AGGGAAGAAUUGAGCGCCUGAUGGAAG&CUUCUAUU------UUUUUUCUUUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8372_c0_g1_677_TPlot.pdf
TRINITY_DN8373_c0_g1:394	si_a126	TRINITY_DN8373_c0_g1	383	403	394	-24.70	-17.70	0.716599190283401	6.5	1-5,403-399;7-19,397-385	6-6,398-398[SIL];20-21,384-383[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UUGUUACUAUUGUUACAGAAC&GUUUUAUAGCAAUAGUAAUUA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN8373_c0_g1_394_TPlot.pdf
TRINITY_DN8373_c0_g1:395	si_a125	TRINITY_DN8373_c0_g1	384	404	395	-25.00	-17.90	0.716	6.5	2-6,403-399;8-20,397-385	1-1,404-404[UP5];7-7,398-398[SIL];21-21,384-384[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UGUUACUAUUGUUACAGAACU&UGUUUUAUAGCAAUAGUAAUU	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN8373_c0_g1_395_TPlot.pdf
TRINITY_DN8373_c0_g1:396	si_a124	TRINITY_DN8373_c0_g1	385	405	396	-25.10	-17.90	0.713147410358566	7.5	3-7,403-399;9-21,397-385	1-2,405-404[UP5];8-8,398-398[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	GUUACUAUUGUUACAGAACUA&UUGUUUUAUAGCAAUAGUAAU	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN8373_c0_g1_396_TPlot.pdf
TRINITY_DN8373_c0_g1:397	si_a123	TRINITY_DN8373_c0_g1	386	406	397	-26.60	-17.40	0.654135338345865	6	1-2,406-405;4-8,403-399;10-21,397-386	3-3,404-404[SIL];9-9,398-398[SIL]	((((((((((((.(((((.((&)).))))).))))))))))))	UUACUAUUGUUACAGAACUAG&CUUGUUUUAUAGCAAUAGUAA	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN8373_c0_g1_397_TPlot.pdf
TRINITY_DN8375_c0_g1:72	si_a65	TRINITY_DN8375_c0_g1	62	81	72	-27.70	-19.10	0.689530685920578	5	1-12,81-70;15-16,68-67;18-21,65-62	13-14,69-69[AILq];17-17,66-66[SIL]	((((.((.-((((((((((((&))))))))))))..)).))))	GAAAGGAA-UGAAAGAGGCGA&UCGCUUCUUUCAAAUUGUUUU	3	0.999944438983975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN8375_c0_g1_72_TPlot.pdf
TRINITY_DN8375_c0_g1:73	si_s74	TRINITY_DN8375_c0_g1	62	82	73	-25.00	-16.40	0.656	11	5-12,78-71;14-21,69-62	1-4,82-79[UP5];13-13,70-70[SIL]	((((((((.((((((((....&....)))))))).))))))))	GAAAGGAAUGAAAGAGGCGAU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8375_c0_g1_73_TPlot.pdf
TRINITY_DN8375_c0_g1:82	si_a55	TRINITY_DN8375_c0_g1	71	90	82	-38.90	-26.70	0.686375321336761	6.5	3-9,88-82;11-21,81-71	1-2,90-89[UP5];10-10,x-x[BULq]	(((((((((((-(((((((..&..))))))).)))))))))))	GAAAGAGGCGA-UCGACUUGC&AGGAGUCGACUCGCUUCUUUC	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN8375_c0_g1_82_TPlot.pdf
TRINITY_DN8376_c0_g1:1022	si_a76	TRINITY_DN8376_c0_g1	1011	1031	1022	-21.20	-14.20	0.669811320754717	10	3-16,1029-1016	1-2,1031-1030[UP5];17-21,1015-1011[UP3]	.....((((((((((((((..&..)))))))))))))).....	UAUGUUAAUGAAGAACAGUCA&AAAUUGUUUUUCAUUAUUAAG	3	0.999999999424797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN8376_c0_g1_1022_TPlot.pdf
TRINITY_DN8376_c0_g1:223	si_s775	TRINITY_DN8376_c0_g1	212	232	223	-25.00	-16.50	0.66	10	2-14,231-219	1-1,232-232[UP5];15-21,218-212[UP3]	.......(((((((((((((.&.))))))))))))).......	CAUCCUCUAGCAGUAGUAGUA&AAUUACUAUUGCUAUAAAACA	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s775_TRINITY_DN8376_c0_g1_223_TPlot.pdf
TRINITY_DN8376_c0_g1:226	si_s772	TRINITY_DN8376_c0_g1	215	235	226	-23.20	-16.50	0.711206896551724	13	5-17,231-219	1-4,235-232[UP5];18-21,218-215[UP3]	....(((((((((((((....&....)))))))))))))....	CCUCUAGCAGUAGUAGUAAAA&AUUAAUUACUAUUGCUAUAAA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN8376_c0_g1_226_TPlot.pdf
TRINITY_DN8376_c0_g1:641	si_s508	TRINITY_DN8376_c0_g1	630	650	641	-22.80	-15.30	0.671052631578947	10	3-12,648-639;14-18,637-633	1-2,650-649[UP5];13-13,638-638[SIL];19-21,632-630[UP3]	...(((((.((((((((((..&..)))))))))).)))))...	ACAGAGAGCAUGGAGUUGUGA&AAACAAUUCUAUAUUCUUAAU	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s508_TRINITY_DN8376_c0_g1_641_TPlot.pdf
TRINITY_DN8376_c0_g1:850	si_a325	TRINITY_DN8376_c0_g1	843	859	850	-25.90	-18.50	0.714285714285714	6.5	1-10,859-850;15-21,849-843	11-14,x-x[BULq]	(((((((----((((((((((&))))))))))....)))))))	GCAAGGA----AAAAAUCAUG&CAUGAUUUUUUUAUUCCUUGU	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN8376_c0_g1_850_TPlot.pdf
TRINITY_DN8376_c0_g1:858	si_a317	TRINITY_DN8376_c0_g1	847	868	858	-24.30	-15.90	0.654320987654321	7.5	1-3,868-866;6-7,863-862;8-20,860-848	4-5,865-864[SIL];x-x,861-861[BULt];21-21,847-847[UP3]	.(((((((((((((.((..(((&)))..))-))))))))))))).	GGAAAAAAUCAUGGUAUCCAUC&GAUUUAU-CCAUGAUUUUUUUA	3	0.999999999963345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN8376_c0_g1_858_TPlot.pdf
TRINITY_DN8376_c0_g1:862	si_a314	TRINITY_DN8376_c0_g1	850	871	862	-27.10	-18.20	0.671586715867159	7	2-6,870-866;9-10,863-862;11-21,860-850	1-1,871-871[UP5];7-8,865-864[SIL];x-x,861-861[BULt]	(((((((((((.((..(((((.&.)))))..))-)))))))))))	AAAAAUCAUGGUAUCCAUCCAU&UUGGAUUUAU-CCAUGAUUUUU	3	0.999990452628391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN8376_c0_g1_862_TPlot.pdf
TRINITY_DN8378_c1_g1:2926	si_a80	TRINITY_DN8378_c1_g1	2915	2935	2926	-22.10	-16.00	0.723981900452489	5	1-13,2935-2923;16-21,2920-2915	14-15,2922-2921[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	UUUUCUAUAUGAUGAAAGAUA&UGUUUUUCAUUAUUAAGAAAA	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN8378_c1_g1_2926_TPlot.pdf
TRINITY_DN8378_c1_g1:3184	si_s80	TRINITY_DN8378_c1_g1	3173	3196	3184	-28.20	-18.64	0.660992907801419	14.5	4-8,3193-3189;10-21,3184-3173	1-3,3196-3194[UP5];9-9,3188-3185[AILt]	((((((((((((....(((((...&...)))))---.))))))))))))	GAAGAGGAAGGGUAUUAAGAAUAU&UUUUUCUU---UCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8378_c1_g1_3184_TPlot.pdf
TRINITY_DN837_c0_g1:1272	si_a896	TRINITY_DN837_c0_g1	1256	1281	1272	-21.60	-14.50	0.671296296296296	12	1-12,1281-1270;13-20,1264-1257	x-x,1269-1265[BULt];21-21,1256-1256[UP3]	.((((((((.....((((((((((((&))))))))))))-----)))))))).	CUGUAUUAUUAUUAUUAUUAUUACUA&UAGUAAUAAUAA-----GUAAUAUAA	2	0.920067137312985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN837_c0_g1_1272_TPlot.pdf
TRINITY_DN837_c0_g1:1273	si_a895	TRINITY_DN837_c0_g1	1257	1282	1273	-21.70	-14.20	0.654377880184332	7	2-13,1281-1270;14-21,1264-1257	1-1,1282-1282[UP5];x-x,1269-1265[BULt]	((((((((.....((((((((((((.&.))))))))))))-----))))))))	UGUAUUAUUAUUAUUAUUAUUACUAG&AUAGUAAUAAUAA-----GUAAUAUA	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a895_TRINITY_DN837_c0_g1_1273_TPlot.pdf
TRINITY_DN837_c0_g1:2856	si_a471	TRINITY_DN837_c0_g1	2845	2865	2856	-21.10	-13.80	0.654028436018957	11.5	5-17,2861-2849	1-4,2865-2862[UP5];18-21,2848-2845[UP3]	....(((((((((((((....&....)))))))))))))....	UUAGAGCAAUAAUUACAAUAU&AAUAUGUAAUUAUUGUUAUAU	3	0.999999991505649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN837_c0_g1_2856_TPlot.pdf
TRINITY_DN837_c0_g1:3251	si_a636	TRINITY_DN837_c0_g1	3239	3260	3251	-26.30	-17.20	0.653992395437262	8	1-13,3260-3248;14-16,3246-3244	x-x,3247-3247[BULt];17-21,3243-3239[UP3]	.....(((.(((((((((((((&)))))))))))))-))).....	GAAGUCUCGAGAAAAAUCGGCA&UGUCGAUUUUUUU-GAGUAAUA	4	0.999999999970739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN837_c0_g1_3251_TPlot.pdf
TRINITY_DN837_c0_g1:3254	si_a633	TRINITY_DN837_c0_g1	3242	3263	3254	-26.40	-17.20	0.651515151515151	9.5	4-16,3260-3248;17-19,3246-3244	1-3,3263-3261[UP5];x-x,3247-3247[BULt];20-21,3243-3242[UP3]	..(((.(((((((((((((...&...)))))))))))))-)))..	GUCUCGAGAAAAAUCGGCAGCC&UUAUGUCGAUUUUUUU-GAGUA	2	0.9999999495509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN837_c0_g1_3254_TPlot.pdf
TRINITY_DN837_c0_g1:3412	si_a410	TRINITY_DN837_c0_g1	3401	3421	3412	-17.80	-12.40	0.696629213483146	8.5	1-15,3421-3407	16-21,3406-3401[UP3]	......(((((((((((((((&)))))))))))))))......	UGCGUAUGGAUGUAAACAAAG&UUUUGUUUAUAUUUAAAUAAA	3	0.999999840065999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN837_c0_g1_3412_TPlot.pdf
TRINITY_DN837_c0_g1:3414	si_a408	TRINITY_DN837_c0_g1	3403	3423	3414	-20.10	-16.00	0.796019900497512	8	2-17,3422-3407	1-1,3423-3423[UP5];18-21,3406-3403[UP3]	....((((((((((((((((.&.))))))))))))))))....	CGUAUGGAUGUAAACAAAGCU&UGUUUUGUUUAUAUUUAAAUA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN837_c0_g1_3414_TPlot.pdf
TRINITY_DN837_c0_g1:3415	si_a407	TRINITY_DN837_c0_g1	3404	3424	3415	-19.80	-16.00	0.808080808080808	8.5	3-18,3422-3407	1-2,3424-3423[UP5];19-21,3406-3404[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUAUGGAUGUAAACAAAGCUG&UUGUUUUGUUUAUAUUUAAAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN837_c0_g1_3415_TPlot.pdf
TRINITY_DN837_c0_g1:3416	si_a406	TRINITY_DN837_c0_g1	3405	3425	3416	-19.80	-16.00	0.808080808080808	9.5	4-19,3422-3407	1-3,3425-3423[UP5];20-21,3406-3405[UP3]	..((((((((((((((((...&...))))))))))))))))..	UAUGGAUGUAAACAAAGCUGU&AUUGUUUUGUUUAUAUUUAAA	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN837_c0_g1_3416_TPlot.pdf
TRINITY_DN837_c0_g1:3417	si_a405	TRINITY_DN837_c0_g1	3406	3426	3417	-19.80	-16.00	0.808080808080808	10.5	5-20,3422-3407	1-4,3426-3423[UP5];21-21,3406-3406[UP3]	.((((((((((((((((....&....)))))))))))))))).	AUGGAUGUAAACAAAGCUGUG&AAUUGUUUUGUUUAUAUUUAA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN837_c0_g1_3417_TPlot.pdf
TRINITY_DN837_c0_g1:3418	si_a404	TRINITY_DN837_c0_g1	3407	3427	3418	-21.70	-15.80	0.728110599078341	11.5	6-21,3422-3407	1-5,3427-3423[UP5]	((((((((((((((((.....&.....))))))))))))))))	UGGAUGUAAACAAAGCUGUGU&GAAUUGUUUUGUUUAUAUUUA	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN837_c0_g1_3418_TPlot.pdf
TRINITY_DN837_c0_g1:3419	si_a403	TRINITY_DN837_c0_g1	3408	3428	3419	-22.00	-14.70	0.668181818181818	13.5	7-21,3422-3408	1-6,3428-3423[UP5]	(((((((((((((((......&......)))))))))))))))	GGAUGUAAACAAAGCUGUGUA&AGAAUUGUUUUGUUUAUAUUU	3	0.999999999999599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN837_c0_g1_3419_TPlot.pdf
TRINITY_DN837_c0_g1:441	si_s88	TRINITY_DN837_c0_g1	430	450	441	-34.80	-22.90	0.658045977011494	7.5	3-4,448-447;6-13,445-438;15-21,436-430	1-2,450-449[UP5];5-5,446-446[SIL];14-14,437-437[SIL]	(((((((.((((((((.((..&..)).)))))))).)))))))	GAGGCGAUGAAGAAGGUAGCC&UCCUUUCUUCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN837_c0_g1_441_TPlot.pdf
TRINITY_DN837_c0_g1:521	si_s181	TRINITY_DN837_c0_g1	510	533	521	-34.60	-22.54	0.651445086705202	14	1-7,533-527;9-11,522-520;14-20,517-511	8-8,526-523[AILt];12-13,519-518[SIL];21-21,510-510[UP3]	.(((((((..(((....(((((((&)))))))---.)))..))))))).	UGUGAUCGGCGCUAGAAGGGCAUC&GAUGCCC---GAGUAACGAUUAUU	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN837_c0_g1_521_TPlot.pdf
TRINITY_DN837_c0_g1:709	si_a306	TRINITY_DN837_c0_g1	698	718	709	-33.50	-21.96	0.655522388059702	10	1-3,718-716;8-20,711-699	4-7,715-712[SIL];21-21,698-698[UP3]	.(((((((((((((....(((&)))....))))))))))))).	CGGGUGAAUCCAAGGUUUUCU&AGAUUCGCUUGGAUUUAUCCA	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a306_TRINITY_DN837_c0_g1_709_TPlot.pdf
TRINITY_DN8384_c0_g1:44	si_a325	TRINITY_DN8384_c0_g1	34	53	44	-25.90	-17.40	0.671814671814672	5.5	1-12,53-42;16-20,39-35	13-15,41-40[AILq];21-21,34-34[UP3]	.(((((..-((((((((((((&))))))))))))...))))).	UCGAGGUC-GAAAAAAUCAUG&CAUGAUUUUUUUAUUCCUUGU	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN8384_c0_g1_44_TPlot.pdf
TRINITY_DN8389_c0_g1:1477	si_a404	TRINITY_DN8389_c0_g1	1466	1486	1477	-21.70	-14.20	0.654377880184332	9	1-6,1486-1481;9-16,1478-1471	7-8,1480-1479[SIL];17-21,1470-1466[UP3]	.....((((((((..((((((&))))))..)))))))).....	UGUAAAUAAACAAUUCAAUUC&GAAUUGUUUUGUUUAUAUUUA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN8389_c0_g1_1477_TPlot.pdf
TRINITY_DN8389_c0_g1:1480	si_a401	TRINITY_DN8389_c0_g1	1469	1489	1480	-22.60	-15.30	0.676991150442478	9	3-9,1487-1481;12-19,1478-1471	1-2,1489-1488[UP5];10-11,1480-1479[SIL];20-21,1470-1469[UP3]	..((((((((..(((((((..&..)))))))..))))))))..	AAAUAAACAAUUCAAUUCUCC&AUAGAAUUGUUUUGUUUAUAU	4	0.9999999816632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN8389_c0_g1_1480_TPlot.pdf
TRINITY_DN8389_c0_g1:2081	si_a304	TRINITY_DN8389_c0_g1	2067	2090	2081	-30.40	-20.60	0.677631578947368	10.5	1-11,2090-2080;12-17,2075-2070;19-21,2069-2067	x-x,2079-2076[BULt];18-18,x-x[BULq]	(((-((((((....(((((((((((&)))))))))))----)))))).)))	GGU-AAUCCAGCAAAGCGGAUCUUU&AAAGAUUCGCU----UGGAUUUAUC	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a304_TRINITY_DN8389_c0_g1_2081_TPlot.pdf
TRINITY_DN838_c0_g1:1161	si_a632	TRINITY_DN838_c0_g1	1150	1170	1161	-26.10	-17.70	0.67816091954023	6.5	1-8,1170-1163;10-12,1161-1159;14-21,1157-1150	9-9,1162-1162[SIL];13-13,1158-1158[SIL]	((((((((.(((.((((((((&)))))))).))).))))))))	ACUCAAGAUAGUAGACGUAGU&AUUAUGUCGAUUUUUUUGAGU	3	0.999998949059963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN838_c0_g1_1161_TPlot.pdf
TRINITY_DN838_c0_g1:1298	si_s77	TRINITY_DN838_c0_g1	1282	1307	1298	-25.50	-16.60	0.650980392156863	13.5	5-16,1303-1292;17-21,1286-1282	1-4,1307-1304[UP5];x-x,1291-1287[BULt]	(((((.....((((((((((((....&....))))))))))))-----)))))	GGAGACCAAAAAGGAAAGAAAGCGCA&UUUUUUUUCUUUCCUU-----UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN838_c0_g1_1298_TPlot.pdf
TRINITY_DN838_c0_g1:641	si_s719	TRINITY_DN838_c0_g1	630	651	641	-32.00	-20.90	0.653125	8	3-9,649-643;10-19,641-632	1-2,651-650[UP5];x-x,642-642[BULt];20-21,631-630[UP3]	..((((((((((.(((((((..&..)))))))-))))))))))..	AGUGGGUAAUAUCCUUUCCCAA&CAGGGAAAG-AUAUUAUCUAGA	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s719_TRINITY_DN838_c0_g1_641_TPlot.pdf
TRINITY_DN838_c0_g1:643	si_s718	TRINITY_DN838_c0_g1	631	652	643	-31.80	-20.90	0.657232704402516	9	4-10,649-643;11-20,641-632	1-3,652-650[UP5];x-x,642-642[BULt];21-21,631-631[UP3]	.((((((((((.(((((((...&...)))))))-)))))))))).	GUGGGUAAUAUCCUUUCCCAAU&ACAGGGAAAG-AUAUUAUCUAG	2	0.482965609911096	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s718_TRINITY_DN838_c0_g1_643_TPlot.pdf
TRINITY_DN838_c0_g1:644	si_s717	TRINITY_DN838_c0_g1	632	653	644	-30.10	-20.70	0.687707641196013	10	5-11,649-643;12-21,641-632	1-4,653-650[UP5];x-x,642-642[BULt]	((((((((((.(((((((....&....)))))))-))))))))))	UGGGUAAUAUCCUUUCCCAAUU&AACAGGGAAAG-AUAUUAUCUA	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN838_c0_g1_644_TPlot.pdf
TRINITY_DN8390_c0_g1:1143	si_s69	TRINITY_DN8390_c0_g1	1131	1152	1143	-23.40	-17.00	0.726495726495727	6	2-16,1151-1137;17-20,1135-1132	1-1,1152-1152[UP5];x-x,1136-1136[BULt];21-21,1131-1131[UP3]	.((((.(((((((((((((((.&.)))))))))))))))-)))).	CAAAGAAGAGAAAAUGGAGGUA&AACUUCUAUUUUUUUU-CUUUC	4	0.999999999995042	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8390_c0_g1_1143_TPlot.pdf
TRINITY_DN8390_c0_g1:1815	si_a784	TRINITY_DN8390_c0_g1	1804	1825	1815	-24.70	-17.50	0.708502024291498	8	3-9,1823-1817;10-21,1815-1804	1-2,1825-1824[UP5];x-x,1816-1816[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GAAGUAGAAGAACUAGAAGGUC&ACUCUUCUA-UUUUUCUAUUUU	2	0.999971897648932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8390_c0_g1_1815_TPlot.pdf
TRINITY_DN8392_c0_g1:1068	si_a142	TRINITY_DN8392_c0_g1	1057	1077	1068	-23.50	-16.10	0.685106382978724	15	7-19,1071-1059	1-6,1077-1072[UP5];20-21,1058-1057[UP3]	..(((((((((((((......&......)))))))))))))..	CCAAGACGACGACGAGCUGGA&AAUUAAUCGUUGUUGUUUUAA	4	0.999999997720328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN8392_c0_g1_1068_TPlot.pdf
TRINITY_DN8393_c0_g1:1070	si_s60	TRINITY_DN8393_c0_g1	1058	1079	1070	-28.20	-19.00	0.673758865248227	9.5	1-11,1079-1069;12-15,1067-1064	x-x,1068-1068[BULt];16-21,1063-1058[UP3]	......((((.(((((((((((&)))))))))))-))))......	GCAUCUGGAGAUUGCUGACUUG&CAAGUUAGCAA-CUUCUAUUUU	2	0.932008198543182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN8393_c0_g1_1070_TPlot.pdf
TRINITY_DN8393_c0_g1:1071	si_s59	TRINITY_DN8393_c0_g1	1059	1080	1071	-29.20	-19.00	0.650684931506849	9.5	2-12,1079-1069;13-16,1067-1064	1-1,1080-1080[UP5];x-x,1068-1068[BULt];17-21,1063-1059[UP3]	.....((((.(((((((((((.&.)))))))))))-)))).....	CAUCUGGAGAUUGCUGACUUGC&UCAAGUUAGCAA-CUUCUAUUU	3	0.993912105496886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN8393_c0_g1_1071_TPlot.pdf
TRINITY_DN8393_c0_g1:1074	si_s56	TRINITY_DN8393_c0_g1	1062	1083	1074	-29.20	-19.00	0.650684931506849	11.5	5-15,1079-1069;16-19,1067-1064	1-4,1083-1080[UP5];x-x,1068-1068[BULt];20-21,1063-1062[UP3]	..((((.(((((((((((....&....)))))))))))-))))..	CUGGAGAUUGCUGACUUGCUGG&AUUUCAAGUUAGCAA-CUUCUA	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN8393_c0_g1_1074_TPlot.pdf
TRINITY_DN8393_c0_g1:1075	si_s55	TRINITY_DN8393_c0_g1	1063	1091	1075	-30.80	-20.30	0.659090909090909	18.5	1-5,1091-1087;6-16,1079-1069;17-20,1067-1064	x-x,1086-1080[BULt];x-x,1068-1068[BULt];21-21,1063-1063[UP3]	.((((.(((((((((((.......(((((&)))))-------)))))))))))-)))).	UGGAGAUUGCUGACUUGCUGGAGGGAAUC&GAUUU-------CAAGUUAGCAA-CUUCU	2	0.854728818948316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN8393_c0_g1_1075_TPlot.pdf
TRINITY_DN8393_c0_g1:667	si_a255	TRINITY_DN8393_c0_g1	656	679	667	-38.10	-26.20	0.687664041994751	12.5	1-9,679-671;10-17,667-660	x-x,670-668[BULt];18-21,659-656[UP3]	....((((((((...(((((((((&)))))))))---))))))))....	CGCGGCUCUCGACCCUGCAGUCGG&CCGAUUGUA---UCGAGGGCAAAC	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a255_TRINITY_DN8393_c0_g1_667_TPlot.pdf
TRINITY_DN8393_c0_g1:671	si_a254	TRINITY_DN8393_c0_g1	657	680	671	-38.80	-26.60	0.685567010309278	12.5	2-10,679-671;11-18,667-660	1-1,680-680[UP5];x-x,670-668[BULt];19-21,659-657[UP3]	...((((((((...(((((((((.&.)))))))))---))))))))...	GCGGCUCUCGACCCUGCAGUCGGA&CCCGAUUGUA---UCGAGGGCAAA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN8393_c0_g1_671_TPlot.pdf
TRINITY_DN8393_c0_g1:725	si_a254	TRINITY_DN8393_c0_g1	714	734	725	-38.80	-25.50	0.657216494845361	10	1-8,734-727;11-13,724-722;15-18,720-717	9-10,726-725[SIL];14-14,721-721[SIL];19-21,716-714[UP3]	...((((.(((..((((((((&))))))))..))).))))...	GCCGCCCCCGACUCGAUUGGG&CCCGAUUGUAUCGAGGGCAAA	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a254_TRINITY_DN8393_c0_g1_725_TPlot.pdf
TRINITY_DN8393_c0_g1:726	si_a253	TRINITY_DN8393_c0_g1	715	735	726	-41.20	-28.80	0.699029126213592	9	1-9,735-727;12-14,724-722;16-19,720-717	10-11,726-725[SIL];15-15,721-721[SIL];20-21,716-715[UP3]	..((((.(((..(((((((((&)))))))))..))).))))..	CCGCCCCCGACUCGAUUGGGG&CCCCGAUUGUAUCGAGGGCAA	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN8393_c0_g1_726_TPlot.pdf
TRINITY_DN8393_c0_g1:727	si_a252	TRINITY_DN8393_c0_g1	716	736	727	-43.50	-31.20	0.717241379310345	8	1-10,736-727;13-15,724-722;17-20,720-717	11-12,726-725[SIL];16-16,721-721[SIL];21-21,716-716[UP3]	.((((.(((..((((((((((&))))))))))..))).)))).	CGCCCCCGACUCGAUUGGGGG&CCCCCGAUUGUAUCGAGGGCA	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a252_TRINITY_DN8393_c0_g1_727_TPlot.pdf
TRINITY_DN8393_c0_g1:728	si_s649	TRINITY_DN8393_c0_g1	717	737	728	-43.80	-30.56	0.697716894977169	10	1-9,737-729;14-20,724-718	10-13,728-725[SIL];21-21,717-717[UP3]	.(((((((....(((((((((&)))))))))....))))))).	GCCCCCGACUCGAUUGGGGGC&GCCCUCGAUACAAUCGGGGGA	2	0.200709387435914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s649_TRINITY_DN8393_c0_g1_728_TPlot.pdf
TRINITY_DN8393_c0_g1:729	si_s648	TRINITY_DN8393_c0_g1	718	738	729	-43.50	-30.36	0.697931034482759	9	2-10,737-729;15-21,724-718	1-1,738-738[UP5];11-14,728-725[SIL]	(((((((....(((((((((.&.)))))))))....)))))))	CCCCCGACUCGAUUGGGGGCC&UGCCCUCGAUACAAUCGGGGG	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s648_TRINITY_DN8393_c0_g1_729_TPlot.pdf
TRINITY_DN8395_c0_g1:358	si_a788	TRINITY_DN8395_c0_g1	346	368	358	-24.80	-16.50	0.665322580645161	8.5	1-9,368-360;11-12,357-356;13-20,354-347	10-10,359-358[AILt];x-x,355-355[BULt];21-21,346-346[UP3]	.((((((((.((..(((((((((&)))))))))-.))-)))))))).	GUGGAGAAUCAGUUGAAAUAGAA&UUCUAUUUU-UCU-AUUUUCCAA	3	0.999999999999547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN8395_c0_g1_358_TPlot.pdf
TRINITY_DN8397_c1_g1:2240	si_a469	TRINITY_DN8397_c1_g1	2229	2249	2240	-21.10	-14.20	0.672985781990521	13	5-19,2245-2231	1-4,2249-2246[UP5];20-21,2230-2229[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAGAUAGUGAUUGCAUGGAAA&AUAAUAUGUAAUUAUUGUUAU	4	0.999972654559331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN8397_c1_g1_2240_TPlot.pdf
TRINITY_DN8397_c1_g1:840	si_a12	TRINITY_DN8397_c1_g1	828	849	840	-26.80	-17.80	0.664179104477612	9.5	2-10,848-840;11-15,838-834	1-1,849-849[UP5];x-x,839-839[BULt];16-21,833-828[UP3]	......(((((.(((((((((.&.)))))))))-)))))......	CCUCUCAGUAGUGCUUUCUCUG&AAGAGAAAGC-CUAUUUAUUUU	4	0.996910853773391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a12_TRINITY_DN8397_c1_g1_840_TPlot.pdf
TRINITY_DN8398_c0_g1:47	si_a828	TRINITY_DN8398_c0_g1	36	55	47	-24.10	-16.00	0.663900414937759	5.5	2-5,54-51;8-21,49-36	1-1,55-55[UP5];6-7,50-50[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	UUUUAUUUUUUUUCG-UCCUC&AAGGAAAGAAAAAAAAUAGAA	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN8398_c0_g1_47_TPlot.pdf
TRINITY_DN8399_c0_g1:1718	si_s631	TRINITY_DN8399_c0_g1	1707	1727	1718	-36.00	-24.00	0.666666666666667	12.5	6-15,1722-1713;17-21,1711-1707	1-5,1727-1723[UP5];16-16,1712-1712[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	GGCGAUCGCCUAUGAGCCCAC&AUCUUUUCGUAGGCGUUUGCC	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN8399_c0_g1_1718_TPlot.pdf
TRINITY_DN8399_c0_g1:2611	si_a46	TRINITY_DN8399_c0_g1	2599	2622	2611	-42.10	-27.98	0.664608076009501	12	1-8,2622-2615;11-18,2610-2603;19-21,2601-2599	9-10,2614-2611[AILt];x-x,2602-2602[BULt]	(((.((((((((....((((((((&))))))))--..))))))))-)))	GGGUUCGGCUCCGACCGAUCUGCC&GGUAGGUC--UAGGAGUCGA-CUC	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a46_TRINITY_DN8399_c0_g1_2611_TPlot.pdf
TRINITY_DN8399_c0_g1:68	si_a397	TRINITY_DN8399_c0_g1	58	77	68	-24.00	-16.00	0.666666666666667	5.5	1-11,77-67;13-18,66-61	12-12,x-x[BULq];19-21,60-58[UP3]	...((((((-(((((((((((&))))))))))).))))))...	AUCCAAAAC-AUUCUAUAUUU&GAAUAUAGAAUUGUUUUGUUU	3	0.999954621283566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN8399_c0_g1_68_TPlot.pdf
TRINITY_DN839_c0_g1:2174	si_a328	TRINITY_DN839_c0_g1	2163	2182	2174	-30.10	-22.20	0.737541528239203	10	1-1,2182-2182;3-7,2181-2177;9-21,2175-2163	2-2,x-x[BULq];8-8,2176-2176[SIL]	(((((((((((((.(((((-(&).))))).)))))))))))))	GGGGCAGGGAAUGCGAGGG-C&GAUUUUUUUAUUCCUUGUCCC	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN839_c0_g1_2174_TPlot.pdf
TRINITY_DN839_c0_g1:2175	si_a327	TRINITY_DN839_c0_g1	2164	2183	2175	-28.40	-19.80	0.697183098591549	10	1-2,2183-2182;4-8,2181-2177;10-21,2175-2164	3-3,x-x[BULq];9-9,2176-2176[SIL]	((((((((((((.(((((-((&)).))))).))))))))))))	GGGCAGGGAAUGCGAGGG-CA&UGAUUUUUUUAUUCCUUGUCC	3	0.999812811998332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN839_c0_g1_2175_TPlot.pdf
TRINITY_DN839_c0_g1:2974	si_s795	TRINITY_DN839_c0_g1	2962	2983	2974	-30.30	-23.00	0.759075907590759	9.5	3-15,2981-2969;16-20,2967-2963	1-2,2983-2982[UP5];x-x,2968-2968[BULt];21-21,2962-2962[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UCGGAGCGUGGAGUGCGAGCGG&AAGCUCGUAUUUUAU-CUUCGU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN839_c0_g1_2974_TPlot.pdf
TRINITY_DN839_c0_g1:2980	si_s789	TRINITY_DN839_c0_g1	2969	2989	2980	-26.20	-17.40	0.66412213740458	17.5	9-21,2981-2969	1-8,2989-2982[UP5]	(((((((((((((........&........)))))))))))))	GUGGAGUGCGAGCGGAGGCCG&UAAAACAAGCUCGUAUUUUAU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN839_c0_g1_2980_TPlot.pdf
TRINITY_DN839_c0_g1:3030	si_s78	TRINITY_DN839_c0_g1	3019	3039	3030	-26.20	-18.10	0.690839694656489	16.5	7-20,3033-3020	1-6,3039-3034[UP5];21-21,3019-3019[UP3]	.((((((((((((((......&......)))))))))))))).	UGAGGGAGGGGGAGGCGUACG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN839_c0_g1_3030_TPlot.pdf
TRINITY_DN839_c0_g1:3031	si_s77	TRINITY_DN839_c0_g1	3020	3040	3031	-25.50	-17.70	0.694117647058824	17.5	8-21,3033-3020	1-7,3040-3034[UP5]	((((((((((((((.......&.......))))))))))))))	GAGGGAGGGGGAGGCGUACGG&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN839_c0_g1_3031_TPlot.pdf
TRINITY_DN83_c0_g1:1956	si_a150	TRINITY_DN83_c0_g1	1945	1966	1956	-29.90	-19.60	0.65551839464883	6	1-7,1966-1960;8-11,1958-1955;13-18,1953-1948;20-21,1946-1945	x-x,1959-1959[BULt];12-12,1954-1954[SIL];19-19,1947-1947[SIL]	((.((((((.((((.(((((((&)))))))-)))).)))))).))	GACUGACCUCAAAAUCAACGAC&GUUGUUG-UUUUAAGGUCAAUC	2	0.995434295473334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN83_c0_g1_1956_TPlot.pdf
TRINITY_DN8402_c0_g1:1621	si_s804	TRINITY_DN8402_c0_g1	1610	1630	1621	-27.90	-18.40	0.659498207885305	8.5	3-12,1628-1619;14-20,1617-1611	1-2,1630-1629[UP5];13-13,1618-1618[SIL];21-21,1610-1610[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CAAGAGGUUAUGGAGAUGACC&UUUUAUCUUCGUUACCUUUUC	3	0.999999999994533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN8402_c0_g1_1621_TPlot.pdf
TRINITY_DN8402_c0_g1:1623	si_s802	TRINITY_DN8402_c0_g1	1612	1632	1623	-26.40	-17.60	0.666666666666667	11	5-14,1628-1619;16-21,1617-1612	1-4,1632-1629[UP5];15-15,1618-1618[SIL]	((((((.((((((((((....&....)))))))))).))))))	AGAGGUUAUGGAGAUGACCUG&UAUUUUAUCUUCGUUACCUUU	4	0.99999999891573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8402_c0_g1_1623_TPlot.pdf
TRINITY_DN8402_c0_g1:1638	si_a418	TRINITY_DN8402_c0_g1	1627	1647	1638	-21.20	-13.90	0.655660377358491	9.5	2-10,1646-1638;13-19,1635-1629	1-1,1647-1647[UP5];11-12,1637-1636[SIL];20-21,1628-1627[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	GACCUGUAUGCAUUUGGAUAG&AUAUUUAAAUAAAUAUAGGAU	2	0.972592457032286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN8402_c0_g1_1638_TPlot.pdf
TRINITY_DN8402_c0_g1:1664	si_a488	TRINITY_DN8402_c0_g1	1653	1680	1664	-26.40	-17.30	0.65530303030303	17.5	2-7,1679-1674;8-20,1666-1654	1-1,1680-1680[UP5];x-x,1673-1667[BULt];21-21,1653-1653[UP3]	.(((((((((((((.......((((((.&.))))))-------))))))))))))).	AAGAAACGACAUAUUUGGACGUCUGUAA&AUAUAGA-------AUAUGUCGUUUUUC	4	0.999271720504021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a488_TRINITY_DN8402_c0_g1_1664_TPlot.pdf
TRINITY_DN8403_c0_g1:233	si_s76	TRINITY_DN8403_c0_g1	222	242	233	-23.60	-16.90	0.716101694915254	7	1-15,242-228	16-21,227-222[UP3]	......(((((((((((((((&)))))))))))))))......	CUUUGUGGAAAGAAAAGAAAU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8403_c0_g1_233_TPlot.pdf
TRINITY_DN8403_c0_g1:234	si_s75	TRINITY_DN8403_c0_g1	223	243	234	-24.00	-17.40	0.725	6.5	1-16,243-228	17-21,227-223[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUGUGGAAAGAAAAGAAAUG&UAUUUUUUUUCUUUCCUUUCU	2	0.999999999922964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8403_c0_g1_234_TPlot.pdf
TRINITY_DN8403_c0_g1:235	si_s74	TRINITY_DN8403_c0_g1	224	244	235	-25.00	-18.10	0.724	7	2-17,243-228	1-1,244-244[UP5];18-21,227-224[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUGUGGAAAGAAAAGAAAUGA&CUAUUUUUUUUCUUUCCUUUC	2	0.999998182066353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8403_c0_g1_235_TPlot.pdf
TRINITY_DN8403_c0_g1:236	si_s73	TRINITY_DN8403_c0_g1	225	245	236	-24.00	-18.10	0.754166666666667	8	3-18,243-228	1-2,245-244[UP5];19-21,227-225[UP3]	...((((((((((((((((..&..))))))))))))))))...	UGUGGAAAGAAAAGAAAUGAC&UCUAUUUUUUUUCUUUCCUUU	2	0.999961159904183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8403_c0_g1_236_TPlot.pdf
TRINITY_DN8403_c0_g1:237	si_s72	TRINITY_DN8403_c0_g1	226	246	237	-24.10	-18.10	0.75103734439834	9	4-19,243-228	1-3,246-244[UP5];20-21,227-226[UP3]	..((((((((((((((((...&...))))))))))))))))..	GUGGAAAGAAAAGAAAUGACU&UUCUAUUUUUUUUCUUUCCUU	2	0.999983544350697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8403_c0_g1_237_TPlot.pdf
TRINITY_DN8403_c0_g1:238	si_s71	TRINITY_DN8403_c0_g1	227	247	238	-25.70	-18.10	0.704280155642023	10	5-20,243-228	1-4,247-244[UP5];21-21,227-227[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGAAAGAAAAGAAAUGACUC&CUUCUAUUUUUUUUCUUUCCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8403_c0_g1_238_TPlot.pdf
TRINITY_DN8403_c0_g1:239	si_s70	TRINITY_DN8403_c0_g1	228	248	239	-25.80	-17.70	0.686046511627907	11	6-21,243-228	1-5,248-244[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAAAGAAAAGAAAUGACUCG&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8403_c0_g1_239_TPlot.pdf
TRINITY_DN8403_c0_g1:318	si_s73	TRINITY_DN8403_c0_g1	306	327	318	-24.00	-16.00	0.666666666666667	7.5	2-6,326-322;8-16,320-312;17-21,310-306	1-1,327-327[UP5];7-7,321-321[SIL];x-x,311-311[BULt]	(((((.(((((((((.(((((.&.))))).)))))))))-)))))	AAAGGCGAAGAGAAAUGAUGGU&UCUAUUUUUUUUCUUU-CCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8403_c0_g1_318_TPlot.pdf
TRINITY_DN8403_c0_g1:396	si_a500	TRINITY_DN8403_c0_g1	385	405	396	-34.40	-23.10	0.671511627906977	6.5	1-9,405-397;11-19,395-387	10-10,396-396[SIL];20-21,386-385[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	AAUAAGGAAGGGGAAAAAUGA&UCGUUUUUCGUCUUCCUUGGA	4	0.999999928384918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN8403_c0_g1_396_TPlot.pdf
TRINITY_DN8403_c0_g1:397	si_a499	TRINITY_DN8403_c0_g1	386	406	397	-35.20	-23.10	0.65625	6.5	2-10,405-397;12-20,395-387	1-1,406-406[UP5];11-11,396-396[SIL];21-21,386-386[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AUAAGGAAGGGGAAAAAUGAA&GUCGUUUUUCGUCUUCCUUGG	3	0.99999999999862	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN8403_c0_g1_397_TPlot.pdf
TRINITY_DN8403_c0_g1:399	si_a497	TRINITY_DN8403_c0_g1	388	409	399	-32.00	-23.30	0.728125	4.5	1-4,409-406;5-12,404-397;14-21,395-388	x-x,405-405[BULt];13-13,396-396[SIL]	((((((((.((((((((.((((&))))-)))))))).))))))))	AAGGAAGGGGAAAAAUGAACAU&AUGU-CGUUUUUCGUCUUCCUU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN8403_c0_g1_399_TPlot.pdf
TRINITY_DN8403_c0_g1:401	si_a495	TRINITY_DN8403_c0_g1	390	411	401	-31.90	-21.30	0.667711598746082	7.5	3-6,409-406;7-14,404-397;16-21,395-390	1-2,411-410[UP5];x-x,405-405[BULt];15-15,396-396[SIL]	((((((.((((((((.((((..&..))))-)))))))).))))))	GGAAGGGGAAAAAUGAACAUUU&AUAUGU-CGUUUUUCGUCUUCC	3	0.999999995180967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN8403_c0_g1_401_TPlot.pdf
TRINITY_DN8404_c0_g1:300	si_a764	TRINITY_DN8404_c0_g1	289	309	300	-28.90	-20.90	0.72318339100346	6	1-13,309-297;15-19,295-291	14-14,296-296[SIL];20-21,290-289[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	CCGGAUCUGUCGAAAACUCAA&UUGGGUUUUUGAUUGAUUCAA	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN8404_c0_g1_300_TPlot.pdf
TRINITY_DN8404_c0_g1:302	si_a762	TRINITY_DN8404_c0_g1	291	311	302	-29.70	-23.60	0.794612794612795	5	1-15,311-297;17-21,295-291	16-16,296-296[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	GGAUCUGUCGAAAACUCAAGG&CUUUGGGUUUUUGAUUGAUUC	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN8404_c0_g1_302_TPlot.pdf
TRINITY_DN8404_c0_g1:303	si_a761	TRINITY_DN8404_c0_g1	292	312	303	-30.10	-21.50	0.714285714285714	5.5	2-16,311-297;18-21,295-292	1-1,312-312[UP5];17-17,296-296[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	GAUCUGUCGAAAACUCAAGGU&CCUUUGGGUUUUUGAUUGAUU	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN8404_c0_g1_303_TPlot.pdf
TRINITY_DN8406_c0_g1:1937	si_s538	TRINITY_DN8406_c0_g1	1926	1946	1937	-28.00	-18.40	0.657142857142857	10	1-14,1946-1933	15-21,1932-1926[UP3]	.......((((((((((((((&)))))))))))))).......	AGUAGCGGAUUGGAUCAAGGA&UUUUUGAUCCGAUCAAAAUAG	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s538_TRINITY_DN8406_c0_g1_1937_TPlot.pdf
TRINITY_DN840_c0_g1:1461	si_s541	TRINITY_DN840_c0_g1	1448	1470	1461	-29.20	-20.18	0.691095890410959	9	1-11,1470-1460;14-20,1455-1449	12-13,1459-1456[AILt];21-21,1448-1448[UP3]	.(((((((....(((((((((((&)))))))))))--..))))))).	CUUCUAUUGACAGAUUGGAUCAA&UUGAUCCGAUC--AAAAUAGAAU	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s541_TRINITY_DN840_c0_g1_1461_TPlot.pdf
TRINITY_DN840_c0_g1:1834	si_a793	TRINITY_DN840_c0_g1	1822	1843	1834	-28.50	-19.70	0.691228070175439	10	1-7,1843-1837;9-15,1835-1829;17-20,1826-1823	8-8,1836-1836[SIL];16-16,1828-1827[AILt];21-21,1822-1822[UP3]	.((((..(((((((.(((((((&))))))).)))))))-.)))).	CCGGAGGUGGAGAGCGGAGAGA&UUUUUCUAUUUUCCA-AUCCGA	3	0.997179157578262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a793_TRINITY_DN840_c0_g1_1834_TPlot.pdf
TRINITY_DN840_c0_g1:1889	si_s460	TRINITY_DN840_c0_g1	1877	1898	1889	-30.80	-20.90	0.678571428571428	11	6-13,1893-1886;14-21,1884-1877	1-5,1898-1894[UP5];x-x,1885-1885[BULt]	((((((((.((((((((.....&.....))))))))-))))))))	CGUUGGAUGAUGAGAUGCCUCA&ACAAUUAUCUCAU-AUCCAACG	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s460_TRINITY_DN840_c0_g1_1889_TPlot.pdf
TRINITY_DN840_c0_g1:2731	si_a312	TRINITY_DN840_c0_g1	2720	2740	2731	-31.20	-22.70	0.727564102564103	10	1-10,2740-2731;12-17,2729-2724	11-11,2730-2730[SIL];18-21,2723-2720[UP3]	....((((((.((((((((((&)))))))))).))))))....	GUCCCGUGGACGAGUCCGAGU&GCUUGGAUUUAUCCAUGAUUU	2	0.571017056948326	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN840_c0_g1_2731_TPlot.pdf
TRINITY_DN840_c0_g1:2732	si_a311	TRINITY_DN840_c0_g1	2721	2741	2732	-32.70	-22.70	0.694189602446483	10.5	2-11,2740-2731;13-18,2729-2724	1-1,2741-2741[UP5];12-12,2730-2730[SIL];19-21,2723-2721[UP3]	...((((((.((((((((((.&.)))))))))).))))))...	UCCCGUGGACGAGUCCGAGUA&CGCUUGGAUUUAUCCAUGAUU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a311_TRINITY_DN840_c0_g1_2732_TPlot.pdf
TRINITY_DN840_c0_g1:2733	si_a310	TRINITY_DN840_c0_g1	2722	2742	2733	-33.70	-22.70	0.673590504451039	10.5	3-12,2740-2731;14-19,2729-2724	1-2,2742-2741[UP5];13-13,2730-2730[SIL];20-21,2723-2722[UP3]	..((((((.((((((((((..&..)))))))))).))))))..	CCCGUGGACGAGUCCGAGUAC&UCGCUUGGAUUUAUCCAUGAU	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN840_c0_g1_2733_TPlot.pdf
TRINITY_DN840_c0_g1:2735	si_a308	TRINITY_DN840_c0_g1	2724	2744	2735	-32.70	-21.90	0.669724770642202	12	5-14,2740-2731;16-21,2729-2724	1-4,2744-2741[UP5];15-15,2730-2730[SIL]	((((((.((((((((((....&....)))))))))).))))))	CGUGGACGAGUCCGAGUACCA&AUUCGCUUGGAUUUAUCCAUG	3	0.99010375930548	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a308_TRINITY_DN840_c0_g1_2735_TPlot.pdf
TRINITY_DN840_c0_g1:2779	si_a319	TRINITY_DN840_c0_g1	2768	2789	2779	-22.40	-16.00	0.714285714285714	9.5	2-9,2788-2781;10-18,2779-2771	1-1,2789-2789[UP5];x-x,2780-2780[BULt];19-21,2770-2768[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	UGGAGAGGAGUCUAUGGAUGAC&UUUAUCCAU-GAUUUUUUUAUU	4	0.99999838304197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN840_c0_g1_2779_TPlot.pdf
TRINITY_DN840_c0_g1:2781	si_a318	TRINITY_DN840_c0_g1	2769	2790	2781	-22.50	-16.00	0.711111111111111	10	3-10,2788-2781;11-19,2779-2771	1-2,2790-2789[UP5];x-x,2780-2780[BULt];20-21,2770-2769[UP3]	..(((((((((.((((((((..&..))))))))-)))))))))..	GGAGAGGAGUCUAUGGAUGACU&AUUUAUCCAU-GAUUUUUUUAU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN840_c0_g1_2781_TPlot.pdf
TRINITY_DN840_c0_g1:3758	si_a355	TRINITY_DN840_c0_g1	3743	3768	3758	-26.80	-17.60	0.656716417910448	11	2-6,3767-3763;7-16,3761-3752;17-21,3747-3743	1-1,3768-3768[UP5];x-x,3762-3762[BULt];x-x,3751-3748[BULt]	(((((....((((((((((.(((((.&.)))))-))))))))))----)))))	UCCGAGGUCUCAAGAUGGAUGUUGAG&AUUAAU-UCUAUUUUGA----UCGGA	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN840_c0_g1_3758_TPlot.pdf
TRINITY_DN8415_c0_g1:553	si_a63	TRINITY_DN8415_c0_g1	542	562	553	-30.20	-21.10	0.698675496688742	7.5	2-10,561-553;12-18,551-545	1-1,562-562[UP5];11-11,552-552[SIL];19-21,544-542[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	UUAGAUUUGAUAGAAGCGGGA&ACUCGCUUCUUUCAAAUUGUU	3	0.973849709796408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN8415_c0_g1_553_TPlot.pdf
TRINITY_DN841_c0_g1:326	si_a789	TRINITY_DN841_c0_g1	315	335	326	-24.80	-16.60	0.669354838709677	12	6-20,330-316	1-5,335-331[UP5];21-21,315-315[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUUGGAAAAUGGGAAACGUCA&UCUAUUUUUCUAUUUUCCAAU	2	0.9999996483754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN841_c0_g1_326_TPlot.pdf
TRINITY_DN841_c0_g1:327	si_a788	TRINITY_DN841_c0_g1	316	336	327	-24.80	-16.50	0.665322580645161	13	7-21,330-316	1-6,336-331[UP5]	(((((((((((((((......&......)))))))))))))))	UUGGAAAAUGGGAAACGUCAA&UUCUAUUUUUCUAUUUUCCAA	2	0.99999997391608	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN841_c0_g1_327_TPlot.pdf
TRINITY_DN841_c0_g1:328	si_a787	TRINITY_DN841_c0_g1	317	350	328	-26.30	-17.90	0.680608365019011	28.5	1-7,350-344;8-21,330-317	x-x,343-331[BULt]	((((((((((((((.............(((((((&)))))))-------------))))))))))))))	UGGAAAAUGGGAAACGUCAAUGAAAAAGUAGAAG&CUUCUAU-------------UUUUCUAUUUUCCA	3	0.999999999932719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN841_c0_g1_328_TPlot.pdf
TRINITY_DN841_c0_g1:345	si_s67	TRINITY_DN841_c0_g1	334	354	345	-25.60	-16.90	0.66015625	7.5	1-3,354-352;5-17,350-338	4-4,351-351[SIL];18-21,337-334[UP3]	....(((((((((((((.(((&))).)))))))))))))....	CAAUGAAAAAGUAGAAGCUGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN841_c0_g1_345_TPlot.pdf
TRINITY_DN841_c0_g1:346	si_s66	TRINITY_DN841_c0_g1	335	355	346	-26.30	-18.00	0.684410646387833	6.5	1-4,355-352;6-18,350-338	5-5,351-351[SIL];19-21,337-335[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AAUGAAAAAGUAGAAGCUGCU&AGCAACUUCUAUUUUUUUUCU	3	0.99999520307726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN841_c0_g1_346_TPlot.pdf
TRINITY_DN841_c0_g1:347	si_s65	TRINITY_DN841_c0_g1	336	356	347	-26.00	-18.00	0.692307692307692	6	2-5,355-352;7-19,350-338	1-1,356-356[UP5];6-6,351-351[SIL];20-21,337-336[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	AUGAAAAAGUAGAAGCUGCUU&UAGCAACUUCUAUUUUUUUUC	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN841_c0_g1_347_TPlot.pdf
TRINITY_DN841_c0_g1:348	si_s64	TRINITY_DN841_c0_g1	337	357	348	-24.10	-18.00	0.746887966804979	7	3-6,355-352;8-20,350-338	1-2,357-356[UP5];7-7,351-351[SIL];21-21,337-337[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UGAAAAAGUAGAAGCUGCUUC&UUAGCAACUUCUAUUUUUUUU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN841_c0_g1_348_TPlot.pdf
TRINITY_DN841_c0_g1:349	si_s63	TRINITY_DN841_c0_g1	338	358	349	-25.80	-18.40	0.713178294573643	7	1-1,358-358;4-7,355-352;9-21,350-338	2-3,357-356[SIL];8-8,351-351[SIL]	(((((((((((((.((((..(&)..)))).)))))))))))))	GAAAAAGUAGAAGCUGCUUCC&GUUAGCAACUUCUAUUUUUUU	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN841_c0_g1_349_TPlot.pdf
TRINITY_DN8428_c0_g1:3008	si_a697	TRINITY_DN8428_c0_g1	2997	3021	3008	-35.50	-25.40	0.715492957746479	10	1-7,3021-3015;8-15,3010-3003;17-21,3001-2997	x-x,3014-3011[BULt];16-16,3002-3002[SIL]	(((((.((((((((....(((((((&)))))))----)))))))).)))))	UGGAAAGUGCCAGUGGUUUGUGUUU&GAACACA----ACUGGUACAUUCCA	3	0.23138892664966	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN8428_c0_g1_3008_TPlot.pdf
TRINITY_DN8428_c0_g1:4607	si_a123	TRINITY_DN8428_c0_g1	4596	4616	4607	-26.60	-18.10	0.680451127819549	8.5	1-8,4616-4609;10-18,4607-4599	9-9,4608-4608[SIL];19-21,4598-4596[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UUUUUAUUGCUACGAAGCAGG&CUUGUUUUAUAGCAAUAGUAA	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN8428_c0_g1_4607_TPlot.pdf
TRINITY_DN8428_c0_g1:4981	si_s631	TRINITY_DN8428_c0_g1	4969	4990	4981	-36.00	-23.80	0.661111111111111	9.5	2-10,4989-4981;13-17,4977-4973;19-21,4971-4969	1-1,4990-4990[UP5];11-12,4980-4978[AILt];18-18,4972-4972[SIL]	(((.(((((...(((((((((.&.)))))))))-..))))).)))	GGCCGACGCAAGACGAGAAGAA&AUCUUUUCGU-AGGCGUUUGCC	3	0.999969729732114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN8428_c0_g1_4981_TPlot.pdf
TRINITY_DN8428_c0_g1:5273	si_a68	TRINITY_DN8428_c0_g1	5262	5282	5273	-25.40	-17.80	0.700787401574803	6.5	1-11,5282-5272;13-19,5270-5264	12-12,5271-5271[SIL];20-21,5263-5262[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	ACAGGGACAUUUUGAAAGGAG&CUUCUUUCAAAUUGUUUUUCA	3	0.999993758972638	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8428_c0_g1_5273_TPlot.pdf
TRINITY_DN8428_c0_g1:5275	si_a66	TRINITY_DN8428_c0_g1	5264	5284	5275	-26.70	-21.50	0.805243445692884	4.5	1-13,5284-5272;15-21,5270-5264	14-14,5271-5271[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	AGGGACAUUUUGAAAGGAGUG&CGCUUCUUUCAAAUUGUUUUU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN8428_c0_g1_5275_TPlot.pdf
TRINITY_DN8428_c0_g1:5276	si_a65	TRINITY_DN8428_c0_g1	5265	5285	5276	-27.70	-20.80	0.750902527075812	5.5	2-14,5284-5272;16-21,5270-5265	1-1,5285-5285[UP5];15-15,5271-5271[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	GGGACAUUUUGAAAGGAGUGC&UCGCUUCUUUCAAAUUGUUUU	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN8428_c0_g1_5276_TPlot.pdf
TRINITY_DN8428_c0_g1:5278	si_a63	TRINITY_DN8428_c0_g1	5267	5287	5278	-30.20	-20.00	0.662251655629139	8.5	4-16,5284-5272;18-21,5270-5267	1-3,5287-5285[UP5];17-17,5271-5271[SIL]	((((.(((((((((((((...&...))))))))))))).))))	GACAUUUUGAAAGGAGUGCAA&ACUCGCUUCUUUCAAAUUGUU	4	0.999756128884886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN8428_c0_g1_5278_TPlot.pdf
TRINITY_DN842_c0_g1:931	si_s555	TRINITY_DN842_c0_g1	920	940	931	-26.90	-18.30	0.680297397769517	9	4-9,937-932;11-21,930-920	1-3,940-938[UP5];10-10,931-931[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	UUCCGAAAGUACUGAUUCAGA&AUAGAAUUAAUAUUUUCGGGA	3	0.941230986746215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s555_TRINITY_DN842_c0_g1_931_TPlot.pdf
TRINITY_DN8430_c0_g1:630	si_a764	TRINITY_DN8430_c0_g1	616	639	630	-28.90	-19.04	0.658823529411765	7.5	2-13,638-627;15-20,622-617	1-1,639-639[UP5];14-14,626-623[AILt];21-21,616-616[UP3]	.((((((....((((((((((((.&.))))))))))))---.)))))).	AUGAAUCUUUUGUUAAAAACCCAC&UUGGGUUUUUGAU---UGAUUCAA	3	0.999999987265962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN8430_c0_g1_630_TPlot.pdf
TRINITY_DN8431_c0_g1:1215	si_s83	TRINITY_DN8431_c0_g1	1204	1224	1215	-30.90	-22.50	0.728155339805825	4.5	1-7,1224-1218;9-20,1216-1205	8-8,1217-1217[SIL];21-21,1204-1204[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AGAGAAGAAGAAAUGGAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999505151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8431_c0_g1_1215_TPlot.pdf
TRINITY_DN8431_c0_g1:679	si_a790	TRINITY_DN8431_c0_g1	669	688	679	-25.80	-19.50	0.755813953488372	4.5	1-2,688-687;4-18,685-671;20-21,670-669	3-3,686-686[SIL];19-19,x-x[BULq]	((-(((((((((((((((.((&)).))))))))))))))).))	GA-UGGAGAAUAGAGAAAGAG&CUAUUUUUCUAUUUUCCAAUC	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN8431_c0_g1_679_TPlot.pdf
TRINITY_DN8432_c0_g1:1997	si_a492	TRINITY_DN8432_c0_g1	1986	2004	1997	-30.20	-19.90	0.658940397350993	6	2-8,2003-1997;11-21,1996-1986	1-1,2004-2004[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	AGGCGAGAAAC--CAUAUUCC&AGAAUAUGUCGUUUUUCGUCU	4	0.999828304979643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN8432_c0_g1_1997_TPlot.pdf
TRINITY_DN8433_c0_g1:1207	si_a498	TRINITY_DN8433_c0_g1	1196	1215	1207	-33.50	-22.10	0.659701492537313	6	1-7,1215-1209;10-17,1207-1200;19-21,1198-1196	8-9,1208-1208[AILq];18-18,1199-1199[SIL]	(((.((((((((.-(((((((&)))))))..)))))))).)))	CGAAGAGGACGAU-AACGACA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999999925	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN8433_c0_g1_1207_TPlot.pdf
TRINITY_DN8434_c1_g1:44	si_a539	TRINITY_DN8434_c1_g1	33	58	44	-32.70	-21.40	0.654434250764526	15	2-7,57-52;8-13,46-41;15-21,39-33	1-1,58-58[UP5];x-x,51-47[BULt];14-14,40-40[SIL]	(((((((.((((((.....((((((.&.))))))-----)))))).)))))))	GAAUGGAAUGGGCCAUGAUGAUCGCC&AGCGAUC-----GGUUCAAUCUAUUU	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a539_TRINITY_DN8434_c1_g1_44_TPlot.pdf
TRINITY_DN8437_c0_g1:1119	si_s772	TRINITY_DN8437_c0_g1	1108	1128	1119	-23.20	-15.90	0.685344827586207	16	7-19,1122-1110	1-6,1128-1123[UP5];20-21,1109-1108[UP3]	..(((((((((((((......&......)))))))))))))..	AAUGUGGCAGUAGUGUGCAGU&AUUAAUUACUAUUGCUAUAAA	4	0.99976111135808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN8437_c0_g1_1119_TPlot.pdf
TRINITY_DN8437_c0_g1:2634	si_a401	TRINITY_DN8437_c0_g1	2623	2643	2634	-22.60	-14.80	0.654867256637168	8.5	1-8,2643-2636;11-20,2633-2624	9-10,2635-2634[SIL];21-21,2623-2623[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	UUAUAGACAAAUAAGUUUUGU&AUAGAAUUGUUUUGUUUAUAU	3	0.999999999999022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN8437_c0_g1_2634_TPlot.pdf
TRINITY_DN844_c0_g1:146	si_a68	TRINITY_DN844_c0_g1	133	155	146	-25.40	-19.80	0.779527559055118	3.5	2-15,154-141;16-21,138-133	1-1,155-155[UP5];x-x,140-139[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	UGAAGACCACAAUUUGAAAGAAA&CUUCUUUCAAAUUGU--UUUUCA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN844_c0_g1_146_TPlot.pdf
TRINITY_DN844_c0_g1:2024	si_a569	TRINITY_DN844_c0_g1	2013	2031	2024	-34.20	-22.58	0.660233918128655	9	1-8,2031-2024;13-21,2021-2013	9-12,2023-2022[AILq]	(((((((((..--((((((((&))))))))....)))))))))	UACAGGCAUUU--UUCACGGG&CCCGUGAAUCGUAUGUUUGUA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a569_TRINITY_DN844_c0_g1_2024_TPlot.pdf
TRINITY_DN844_c0_g1:2253	si_a753	TRINITY_DN844_c0_g1	2242	2262	2253	-33.10	-21.60	0.652567975830816	9.5	2-14,2261-2249	1-1,2262-2262[UP5];15-21,2248-2242[UP3]	.......(((((((((((((.&.))))))))))))).......	CUCAAAGCGGAGGAGGUUCAG&AUGAACCUCCUUUGGGUUUUU	3	0.999999791918167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN844_c0_g1_2253_TPlot.pdf
TRINITY_DN844_c0_g1:2256	si_a750	TRINITY_DN844_c0_g1	2245	2267	2256	-39.70	-27.70	0.697732997481108	9	1-4,2267-2264;5-17,2261-2249	x-x,2263-2262[BULt];18-21,2248-2245[UP3]	....(((((((((((((..((((&))))--)))))))))))))....	AAAGCGGAGGAGGUUCAGGUGGC&GCCA--UGAACCUCCUUUGGGUU	3	0.752619196047288	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a750_TRINITY_DN844_c0_g1_2256_TPlot.pdf
TRINITY_DN844_c0_g1:2258	si_a748	TRINITY_DN844_c0_g1	2247	2269	2258	-42.00	-27.70	0.65952380952381	10	3-6,2267-2264;7-19,2261-2249	1-2,2269-2268[UP5];x-x,2263-2262[BULt];20-21,2248-2247[UP3]	..(((((((((((((..((((..&..))))--)))))))))))))..	AGCGGAGGAGGUUCAGGUGGCAU&UGGCCA--UGAACCUCCUUUGGG	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a748_TRINITY_DN844_c0_g1_2258_TPlot.pdf
TRINITY_DN844_c0_g1:2678	si_s871	TRINITY_DN844_c0_g1	2667	2687	2678	-31.00	-20.70	0.667741935483871	10	1-8,2687-2680;10-16,2678-2672	9-9,2679-2679[SIL];17-21,2671-2667[UP3]	.....(((((((.((((((((&)))))))).))))))).....	UAAGAGGUUCUGUGACUGGUG&UACCGGUCUUAGAACUAAAAA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN844_c0_g1_2678_TPlot.pdf
TRINITY_DN844_c0_g1:2679	si_s870	TRINITY_DN844_c0_g1	2668	2688	2679	-32.70	-23.80	0.72782874617737	9.5	1-9,2688-2680;11-17,2678-2672	10-10,2679-2679[SIL];18-21,2671-2668[UP3]	....(((((((.(((((((((&))))))))).)))))))....	AAGAGGUUCUGUGACUGGUGG&CUACCGGUCUUAGAACUAAAA	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s870_TRINITY_DN844_c0_g1_2679_TPlot.pdf
TRINITY_DN844_c0_g1:2680	si_s869	TRINITY_DN844_c0_g1	2669	2689	2680	-35.10	-24.20	0.689458689458689	9.5	2-10,2688-2680;12-18,2678-2672	1-1,2689-2689[UP5];11-11,2679-2679[SIL];19-21,2671-2669[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	AGAGGUUCUGUGACUGGUGGA&CCUACCGGUCUUAGAACUAAA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s869_TRINITY_DN844_c0_g1_2680_TPlot.pdf
TRINITY_DN844_c0_g1:2681	si_s868	TRINITY_DN844_c0_g1	2670	2690	2681	-35.90	-24.20	0.674094707520891	10	3-11,2688-2680;13-19,2678-2672	1-2,2690-2689[UP5];12-12,2679-2679[SIL];20-21,2671-2670[UP3]	..(((((((.(((((((((..&..))))))))).)))))))..	GAGGUUCUGUGACUGGUGGAU&ACCUACCGGUCUUAGAACUAA	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s868_TRINITY_DN844_c0_g1_2681_TPlot.pdf
TRINITY_DN844_c0_g1:304	si_a320	TRINITY_DN844_c0_g1	292	313	304	-24.40	-17.10	0.700819672131148	10	5-14,309-300;15-21,298-292	1-4,313-310[UP5];x-x,299-299[BULt]	(((((((.((((((((((....&....))))))))))-)))))))	GAAUGAGAAAAGUCAUGGCCAU&UUAUCCAUGAUUUU-UUUAUUC	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN844_c0_g1_304_TPlot.pdf
TRINITY_DN844_c0_g1:305	si_a319	TRINITY_DN844_c0_g1	294	314	305	-22.40	-14.60	0.651785714285714	13.5	6-18,309-297	1-5,314-310[UP5];19-21,296-294[UP3]	...(((((((((((((.....&.....)))))))))))))...	AUGAGAAAAGUCAUGGCCAUA&UUUAUCCAUGAUUUUUUUAUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN844_c0_g1_305_TPlot.pdf
TRINITY_DN8456_c0_g1:366	si_a123	TRINITY_DN8456_c0_g1	356	375	366	-26.60	-17.80	0.669172932330827	7.5	1-6,375-370;8-15,368-361;17-20,360-357	7-7,369-369[SIL];16-16,x-x[BULq];21-21,356-356[UP3]	.((((-((((((((.((((((&)))))).)))))))).)))).	GUGCU-UUGCUGUGUAACGAG&CUUGUUUUAUAGCAAUAGUAA	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN8456_c0_g1_366_TPlot.pdf
TRINITY_DN845_c0_g1:1349	si_a406	TRINITY_DN845_c0_g1	1338	1359	1349	-19.80	-14.60	0.737373737373737	8.5	2-9,1358-1351;11-21,1348-1338	1-1,1359-1359[UP5];10-10,1350-1349[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	UUUGGAUGUGAUCCAGAACAAG&AUUGUUUUG-UUUAUAUUUAAA	4	0.999986445621864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN845_c0_g1_1349_TPlot.pdf
TRINITY_DN845_c0_g1:1665	si_a74	TRINITY_DN845_c0_g1	1654	1674	1665	-22.20	-17.00	0.765765765765766	5	2-19,1673-1656	1-1,1674-1674[UP5];20-21,1655-1654[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUAUGGUGAAAAAUAAUUUGU&UCAAAUUGUUUUUCAUUAUUA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN845_c0_g1_1665_TPlot.pdf
TRINITY_DN845_c0_g1:1666	si_a73	TRINITY_DN845_c0_g1	1655	1675	1666	-21.90	-17.00	0.776255707762557	6	3-20,1673-1656	1-2,1675-1674[UP5];21-21,1655-1655[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UAUGGUGAAAAAUAAUUUGUU&UUCAAAUUGUUUUUCAUUAUU	2	0.847313499151616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN845_c0_g1_1666_TPlot.pdf
TRINITY_DN845_c0_g1:1667	si_a72	TRINITY_DN845_c0_g1	1656	1676	1667	-21.90	-17.00	0.776255707762557	7	4-21,1673-1656	1-3,1676-1674[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUGGUGAAAAAUAAUUUGUUU&UUUCAAAUUGUUUUUCAUUAU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN845_c0_g1_1667_TPlot.pdf
TRINITY_DN845_c0_g1:1668	si_a71	TRINITY_DN845_c0_g1	1657	1677	1668	-23.30	-16.00	0.686695278969957	9	5-21,1673-1657	1-4,1677-1674[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGGUGAAAAAUAAUUUGUUUA&CUUUCAAAUUGUUUUUCAUUA	2	0.999961159904183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN845_c0_g1_1668_TPlot.pdf
TRINITY_DN8462_c0_g4:109	si_s493	TRINITY_DN8462_c0_g4	98	118	109	-19.80	-13.20	0.666666666666667	8	1-15,118-104	16-21,103-98[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUAGUGUUUAUGUUUAGAU&AUUUAAAUAUAAACAAAACAA	4	0.987164464648817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN8462_c0_g4_109_TPlot.pdf
TRINITY_DN8462_c0_g4:110	si_s492	TRINITY_DN8462_c0_g4	99	119	110	-20.10	-13.20	0.656716417910448	8	2-16,118-104	1-1,119-119[UP5];17-21,103-99[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUUAGUGUUUAUGUUUAGAUC&UAUUUAAAUAUAAACAAAACA	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN8462_c0_g4_110_TPlot.pdf
TRINITY_DN8462_c0_g4:112	si_s490	TRINITY_DN8462_c0_g4	101	121	112	-17.80	-13.20	0.741573033707865	10	4-18,118-104	1-3,121-119[UP5];19-21,103-101[UP3]	...(((((((((((((((...&...)))))))))))))))...	UAGUGUUUAUGUUUAGAUCCA&UUUAUUUAAAUAUAAACAAAA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN8462_c0_g4_112_TPlot.pdf
TRINITY_DN8462_c0_g4:113	si_s489	TRINITY_DN8462_c0_g4	102	122	113	-17.90	-13.20	0.737430167597765	11	5-19,118-104	1-4,122-119[UP5];20-21,103-102[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGUGUUUAUGUUUAGAUCCAU&AUUUAUUUAAAUAUAAACAAA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s489_TRINITY_DN8462_c0_g4_113_TPlot.pdf
TRINITY_DN8462_c0_g4:114	si_s488	TRINITY_DN8462_c0_g4	103	123	114	-18.30	-13.20	0.721311475409836	11.5	6-20,118-104	1-5,123-119[UP5];21-21,103-103[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GUGUUUAUGUUUAGAUCCAUC&UAUUUAUUUAAAUAUAAACAA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN8462_c0_g4_114_TPlot.pdf
TRINITY_DN8462_c0_g4:115	si_s487	TRINITY_DN8462_c0_g4	104	124	115	-18.40	-13.00	0.706521739130435	12.5	7-21,118-104	1-6,124-119[UP5]	(((((((((((((((......&......)))))))))))))))	UGUUUAUGUUUAGAUCCAUCA&AUAUUUAUUUAAAUAUAAACA	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN8462_c0_g4_115_TPlot.pdf
TRINITY_DN8467_c0_g1:401	si_a899	TRINITY_DN8467_c0_g1	387	410	401	-18.70	-12.30	0.657754010695187	7	2-13,409-398;14-20,394-388	1-1,410-410[UP5];x-x,397-395[BULt];21-21,387-387[UP3]	.(((((((...((((((((((((.&.))))))))))))---))))))).	CUUUUGUGGCUUUACUUAUUGUUU&UAAUAAUAAGUAA---UAUAAAAA	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN8467_c0_g1_401_TPlot.pdf
TRINITY_DN8469_c0_g5:388	si_a7	TRINITY_DN8469_c0_g5	378	397	388	-29.10	-19.10	0.656357388316151	6	2-13,396-385;15-17,384-382	1-1,397-397[UP5];14-14,x-x[BULq];18-21,381-378[UP3]	....(((-((((((((((((.&.)))))))))))).)))....	UCUGAGG-UUUCUCUUCAAUG&AAUUGAAGAGAAAGCCUAUUU	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a7_TRINITY_DN8469_c0_g5_388_TPlot.pdf
TRINITY_DN846_c0_g1:1220	si_a447	TRINITY_DN846_c0_g1	1209	1232	1220	-25.70	-17.12	0.666147859922179	13.5	2-6,1231-1227;9-21,1221-1209	1-1,1232-1232[UP5];7-8,1226-1222[AILt]	(((((((((((((.....(((((.&.)))))---..)))))))))))))	UGUAGCGACAAUUUUGUGCUCGUC&UAUGAG---AUAAUUGUUGUUAUA	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN846_c0_g1_1220_TPlot.pdf
TRINITY_DN846_c0_g1:1925	si_a326	TRINITY_DN846_c0_g1	1909	1934	1925	-26.20	-21.20	0.809160305343511	9.5	1-17,1934-1918;18-21,1912-1909	x-x,1917-1913[BULt]	((((.....(((((((((((((((((&)))))))))))))))))-----))))	GACAGGUGUAGGAGUGAAGGAAUCGU&AUGAUUUUUUUAUUCCU-----UGUC	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN846_c0_g1_1925_TPlot.pdf
TRINITY_DN846_c0_g1:1927	si_a324	TRINITY_DN846_c0_g1	1916	1936	1927	-27.50	-18.60	0.676363636363636	9	3-19,1934-1918	1-2,1936-1935[UP5];20-21,1917-1916[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GUAGGAGUGAAGGAAUCGUUG&CCAUGAUUUUUUUAUUCCUUG	3	0.999670049851458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN846_c0_g1_1927_TPlot.pdf
TRINITY_DN846_c0_g1:1928	si_a323	TRINITY_DN846_c0_g1	1917	1937	1928	-26.80	-19.80	0.738805970149254	7	1-2,1937-1936;4-20,1934-1918	3-3,1935-1935[SIL];21-21,1917-1917[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	UAGGAGUGAAGGAAUCGUUGA&UCCAUGAUUUUUUUAUUCCUU	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN846_c0_g1_1928_TPlot.pdf
TRINITY_DN846_c0_g1:1929	si_a322	TRINITY_DN846_c0_g1	1918	1938	1929	-27.00	-20.80	0.77037037037037	6	1-3,1938-1936;5-21,1934-1918	4-4,1935-1935[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	AGGAGUGAAGGAAUCGUUGAU&AUCCAUGAUUUUUUUAUUCCU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN846_c0_g1_1929_TPlot.pdf
TRINITY_DN846_c0_g1:2214	si_a785	TRINITY_DN846_c0_g1	2202	2223	2214	-25.90	-17.20	0.664092664092664	4.5	1-13,2223-2211;15-19,2209-2205;20-21,2203-2202	14-14,2210-2210[SIL];x-x,2204-2204[BULt]	((.(((((.(((((((((((((&))))))))))))).)))))-))	GAUGAAUAAAGAAAUAGAGGAG&CUCUUCUAUUUUUCUAUUU-UC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN846_c0_g1_2214_TPlot.pdf
TRINITY_DN846_c0_g1:2662	si_a141	TRINITY_DN846_c0_g1	2651	2671	2662	-23.80	-16.00	0.672268907563025	7.5	1-12,2671-2660;14-19,2658-2653	13-13,2659-2659[SIL];20-21,2652-2651[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AUAGACAAAGACGGUUGGUUA&UAAUUAAUCGUUGUUGUUUUA	3	0.999999998944216	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN846_c0_g1_2662_TPlot.pdf
TRINITY_DN846_c0_g1:2663	si_a140	TRINITY_DN846_c0_g1	2652	2672	2663	-25.20	-19.50	0.773809523809524	6	1-13,2672-2660;15-20,2658-2653	14-14,2659-2659[SIL];21-21,2652-2652[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	UAGACAAAGACGGUUGGUUAC&GUAAUUAAUCGUUGUUGUUUU	4	0.588366314617579	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN846_c0_g1_2663_TPlot.pdf
TRINITY_DN846_c0_g1:2664	si_a139	TRINITY_DN846_c0_g1	2653	2673	2664	-25.90	-19.60	0.756756756756757	6	2-14,2672-2660;16-21,2658-2653	1-1,2673-2673[UP5];15-15,2659-2659[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AGACAAAGACGGUUGGUUACA&AGUAAUUAAUCGUUGUUGUUU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN846_c0_g1_2664_TPlot.pdf
TRINITY_DN846_c0_g1:2835	si_s633	TRINITY_DN846_c0_g1	2826	2845	2835	-37.90	-24.80	0.654353562005277	7	1-8,2845-2838;9-14,2836-2831;17-20,2830-2827	x-x,2837-2837[BULt];15-16,x-x[BULq];21-21,2826-2826[UP3]	.((((--((((((.((((((((&))))))))-))))))..)))).	UGGGU--AUGCCUAACGAAGAG&CUUUUCGU-AGGCGUUUGCCCU	3	0.999985394663513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN846_c0_g1_2835_TPlot.pdf
TRINITY_DN846_c0_g2:1506	si_a147	TRINITY_DN846_c0_g2	1490	1515	1506	-30.40	-20.00	0.657894736842105	8.5	1-13,1515-1503;14-16,1501-1499;17-21,1494-1490	x-x,1502-1502[BULt];x-x,1498-1495[BULt]	(((((....(((.(((((((((((((&)))))))))))))-)))----)))))	UGGCCAAAGUUAUAAACGACGACGGU&AUCGUUGUUGUUU-UAA----GGUCA	2	0.999926725936868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN846_c0_g2_1506_TPlot.pdf
TRINITY_DN846_c0_g2:1511	si_a142	TRINITY_DN846_c0_g2	1500	1520	1511	-23.50	-15.50	0.659574468085106	14.5	6-18,1515-1503	1-5,1520-1516[UP5];19-21,1502-1500[UP3]	...(((((((((((((.....&.....)))))))))))))...	UAUAAACGACGACGGUAUCCC&AAUUAAUCGUUGUUGUUUUAA	2	0.999999999336545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN846_c0_g2_1511_TPlot.pdf
TRINITY_DN846_c0_g2:1512	si_a141	TRINITY_DN846_c0_g2	1501	1521	1512	-23.80	-15.50	0.651260504201681	15.5	7-19,1515-1503	1-6,1521-1516[UP5];20-21,1502-1501[UP3]	..(((((((((((((......&......)))))))))))))..	AUAAACGACGACGGUAUCCCA&UAAUUAAUCGUUGUUGUUUUA	2	0.999999999576142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN846_c0_g2_1512_TPlot.pdf
TRINITY_DN846_c0_g2:1660	si_a143	TRINITY_DN846_c0_g2	1649	1669	1660	-25.10	-16.50	0.657370517928287	10.5	5-15,1665-1655;18-21,1652-1649	1-4,1669-1666[UP5];16-17,1654-1653[SIL]	((((..(((((((((((....&....)))))))))))..))))	CUUACUACGAUAACGAUGGGU&AUUAAUCGUUGUUGUUUUAAG	3	0.999999924378671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN846_c0_g2_1660_TPlot.pdf
TRINITY_DN846_c0_g2:2063	si_a899	TRINITY_DN846_c0_g2	2051	2072	2063	-18.70	-12.30	0.657754010695187	5.5	1-11,2072-2062;12-19,2060-2053	x-x,2061-2061[BULt];20-21,2052-2051[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	UGUUUGUAUUAAUUUAUUAUUA&UAAUAAUAAGU-AAUAUAAAAA	3	0.999761340034339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN846_c0_g2_2063_TPlot.pdf
TRINITY_DN846_c0_g2:426	si_a790	TRINITY_DN846_c0_g2	411	435	426	-25.80	-17.10	0.662790697674419	13	3-11,433-425;12-21,420-411	1-2,435-434[UP5];x-x,424-421[BULt]	((((((((((....(((((((((..&..)))))))))----))))))))))	GGUUGGAGAAGAAUUAGAAAGAUUU&CUAUUUUUCUA----UUUUCCAAUC	4	0.99999991012933	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN846_c0_g2_426_TPlot.pdf
TRINITY_DN8478_c0_g1:1252	si_s806	TRINITY_DN8478_c0_g1	1238	1261	1252	-28.60	-19.10	0.667832167832168	10	4-17,1258-1245;18-21,1241-1238	1-3,1261-1259[UP5];x-x,1244-1242[BULt]	((((...((((((((((((((...&...))))))))))))))---))))	GAGGUUUAAAGGUAAUGAAGAAAA&UUAUCUUCGUUACCUUU---UCUU	2	0.999999239310424	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN8478_c0_g1_1252_TPlot.pdf
TRINITY_DN8478_c0_g1:1356	si_s76	TRINITY_DN8478_c0_g1	1345	1365	1356	-23.60	-15.50	0.656779661016949	12.5	4-18,1362-1348	1-3,1365-1363[UP5];19-21,1347-1345[UP3]	...(((((((((((((((...&...)))))))))))))))...	ACUGGGGGAGAGAAAGGACUU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8478_c0_g1_1356_TPlot.pdf
TRINITY_DN8479_c0_g1:1292	si_s80	TRINITY_DN8479_c0_g1	1281	1301	1292	-28.20	-21.40	0.75886524822695	9	3-18,1299-1284	1-2,1301-1300[UP5];19-21,1283-1281[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUCGAGGGAGGGGAAGAAACC&UUUUUCUUUCCUUUCUUCUUC	4	0.999999984454501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8479_c0_g1_1292_TPlot.pdf
TRINITY_DN8479_c0_g1:1293	si_s79	TRINITY_DN8479_c0_g1	1282	1302	1293	-26.20	-21.40	0.816793893129771	9.5	4-19,1299-1284	1-3,1302-1300[UP5];20-21,1283-1282[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCGAGGGAGGGGAAGAAACCA&UUUUUUCUUUCCUUUCUUCUU	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8479_c0_g1_1293_TPlot.pdf
TRINITY_DN8479_c0_g1:2451	si_s104	TRINITY_DN8479_c0_g1	2440	2461	2451	-32.70	-25.10	0.767584097859327	5.5	1-8,2461-2454;9-20,2452-2441	x-x,2453-2453[BULt];21-21,2440-2440[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	CUCUGUUUUCUAAUUUCGAAGC&GCUUCGGA-UUGGAAAAUAGAA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN8479_c0_g1_2451_TPlot.pdf
TRINITY_DN8479_c0_g1:2452	si_s103	TRINITY_DN8479_c0_g1	2441	2462	2452	-34.10	-26.50	0.777126099706745	4.5	1-9,2462-2454;10-21,2452-2441	x-x,2453-2453[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	UCUGUUUUCUAAUUUCGAAGCG&CGCUUCGGA-UUGGAAAAUAGA	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s103_TRINITY_DN8479_c0_g1_2452_TPlot.pdf
TRINITY_DN847_c0_g1:1007	si_a319	TRINITY_DN847_c0_g1	996	1016	1007	-22.40	-15.40	0.6875	12.5	5-17,1012-1000	1-4,1016-1013[UP5];18-21,999-996[UP3]	....(((((((((((((....&....)))))))))))))....	AUUCAAGAAGUCAUGGAAUCG&UUUAUCCAUGAUUUUUUUAUU	4	0.999999999484294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN847_c0_g1_1007_TPlot.pdf
TRINITY_DN847_c0_g1:1009	si_a317	TRINITY_DN847_c0_g1	998	1015	1009	-24.30	-15.80	0.650205761316872	9	1-3,1015-1013;7-19,1012-1000	4-6,x-x[BULq];20-21,999-998[UP3]	..(((((((((((((---(((&)))...)))))))))))))..	UCAAGAAGUCAUGGA---AUC&GAUUUAUCCAUGAUUUUUUUA	4	0.999999999997331	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN847_c0_g1_1009_TPlot.pdf
TRINITY_DN847_c0_g1:1126	si_a67	TRINITY_DN847_c0_g1	1108	1135	1126	-27.20	-19.00	0.698529411764706	16.5	2-10,1134-1126;11-21,1118-1108	1-1,1135-1135[UP5];x-x,1125-1119[BULt]	(((((((((((.......(((((((((.&.)))))))))-------)))))))))))	GAAAAACAGUUCCAAUAGUGAAAGGAGG&GCUUCUUUCA-------AAUUGUUUUUC	4	0.999991909822843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN847_c0_g1_1126_TPlot.pdf
TRINITY_DN847_c0_g1:1352	si_s208	TRINITY_DN847_c0_g1	1341	1361	1352	-34.50	-23.80	0.689855072463768	9	2-10,1360-1352;12-18,1350-1344	1-1,1361-1361[UP5];11-11,1351-1351[SIL];19-21,1343-1341[UP3]	...(((((((.(((((((((.&.))))))))).)))))))...	UGGUUGGACAGAGCUGGUGCC&UGUACCAGUUGUGUUCGAAAC	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s208_TRINITY_DN847_c0_g1_1352_TPlot.pdf
TRINITY_DN847_c0_g1:1354	si_s206	TRINITY_DN847_c0_g1	1343	1363	1354	-33.00	-23.80	0.721212121212121	10	4-12,1360-1352;14-20,1350-1344	1-3,1363-1361[UP5];13-13,1351-1351[SIL];21-21,1343-1343[UP3]	.(((((((.(((((((((...&...))))))))).))))))).	GUUGGACAGAGCUGGUGCCAC&AAUGUACCAGUUGUGUUCGAA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN847_c0_g1_1354_TPlot.pdf
TRINITY_DN847_c0_g1:345	si_a790	TRINITY_DN847_c0_g1	334	354	345	-25.80	-17.40	0.674418604651163	9.5	1-16,354-339	17-21,338-334[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAGCUGAGAAUGGAGAGGUAG&CUAUUUUUCUAUUUUCCAAUC	2	0.999489287954931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN847_c0_g1_345_TPlot.pdf
TRINITY_DN847_c0_g1:348	si_a787	TRINITY_DN847_c0_g1	337	357	348	-26.30	-18.90	0.718631178707224	9	3-19,355-339	1-2,357-356[UP5];20-21,338-337[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	CUGAGAAUGGAGAGGUAGACA&CUUCUAUUUUUCUAUUUUCCA	3	0.999985095982078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN847_c0_g1_348_TPlot.pdf
TRINITY_DN847_c0_g1:351	si_a784	TRINITY_DN847_c0_g1	340	367	351	-24.70	-17.60	0.712550607287449	19.5	2-5,366-363;6-21,355-340	1-1,367-367[UP5];x-x,362-356[BULt]	((((((((((((((((.......((((.&.))))-------))))))))))))))))	AGAAUGGAGAGGUAGACAAUGAAGGAGA&ACUCU-------UCUAUUUUUCUAUUUU	4	0.999999902393794	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN847_c0_g1_351_TPlot.pdf
TRINITY_DN847_c0_g1:840	si_a154	TRINITY_DN847_c0_g1	829	849	840	-27.00	-19.00	0.703703703703704	8	2-18,848-832	1-1,849-849[UP5];19-21,831-829[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UGAAGAUUGAUUUUGGAACAC&UUGUUUUAAGGUCAAUCUAUU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a154_TRINITY_DN847_c0_g1_840_TPlot.pdf
TRINITY_DN847_c0_g1:843	si_a151	TRINITY_DN847_c0_g1	832	851	843	-28.90	-19.30	0.667820069204152	6	2-4,850-848;6-21,847-832	1-1,851-851[UP5];5-5,x-x[BULq]	((((((((((((((((-(((.&.))).))))))))))))))))	AGAUUGAUUUUGGAAC-ACAU&UUGUUGUUUUAAGGUCAAUCU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN847_c0_g1_843_TPlot.pdf
TRINITY_DN8480_c0_g1:1145	si_s520	TRINITY_DN8480_c0_g1	1134	1154	1145	-24.00	-15.60	0.65	8	1-16,1154-1139	17-21,1138-1134[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAGAAAUUUUGGAUUGAGAAU&AUUCUUAAUUCGAAAUCAUUU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN8480_c0_g1_1145_TPlot.pdf
TRINITY_DN8480_c0_g1:1146	si_s519	TRINITY_DN8480_c0_g1	1135	1155	1146	-24.40	-16.40	0.672131147540984	7	1-17,1155-1139	18-21,1138-1135[UP3]	....(((((((((((((((((&)))))))))))))))))....	AGAAAUUUUGGAUUGAGAAUG&UAUUCUUAAUUCGAAAUCAUU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN8480_c0_g1_1146_TPlot.pdf
TRINITY_DN8480_c0_g1:1147	si_s518	TRINITY_DN8480_c0_g1	1136	1156	1147	-24.60	-17.70	0.719512195121951	6.5	1-18,1156-1139	19-21,1138-1136[UP3]	...((((((((((((((((((&))))))))))))))))))...	GAAAUUUUGGAUUGAGAAUGU&AUAUUCUUAAUUCGAAAUCAU	2	0.361134516666928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN8480_c0_g1_1147_TPlot.pdf
TRINITY_DN8480_c0_g1:1150	si_s515	TRINITY_DN8480_c0_g1	1139	1159	1150	-24.80	-17.70	0.713709677419355	8	4-21,1156-1139	1-3,1159-1157[UP5]	((((((((((((((((((...&...))))))))))))))))))	AUUUUGGAUUGAGAAUGUCAA&UCUAUAUUCUUAAUUCGAAAU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN8480_c0_g1_1150_TPlot.pdf
TRINITY_DN8480_c0_g1:2676	si_s136	TRINITY_DN8480_c0_g1	2665	2685	2676	-28.90	-19.80	0.685121107266436	13	7-19,2679-2667	1-6,2685-2680[UP5];20-21,2666-2665[UP3]	..(((((((((((((......&......)))))))))))))..	CGGGGUUUUUGAUUGGACCAC&UUGAAUCAAUCAAAAACCCAA	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s136_TRINITY_DN8480_c0_g1_2676_TPlot.pdf
TRINITY_DN8480_c0_g1:592	si_s525	TRINITY_DN8480_c0_g1	581	602	592	-24.00	-15.60	0.65	11.5	5-8,598-595;10-21,592-581	1-4,602-599[UP5];9-9,594-593[AILt]	((((((((((((..((((....&....))))-.))))))))))))	AUCAAAGAUGAUAGUCGACCCG&UAAUUCGA-AAUCAUUUUUGAU	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN8480_c0_g1_592_TPlot.pdf
TRINITY_DN8481_c0_g1:1279	si_a783	TRINITY_DN8481_c0_g1	1267	1288	1279	-24.70	-17.40	0.704453441295547	9.5	3-15,1286-1274;16-19,1272-1269	1-2,1288-1287[UP5];x-x,1273-1273[BULt];20-21,1268-1267[UP3]	..((((.(((((((((((((..&..)))))))))))))-))))..	AUAUAGUAGAAGUGGGAGAGCC&AACUCUUCUAUUUUU-CUAUUU	4	0.999999966633967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8481_c0_g1_1279_TPlot.pdf
TRINITY_DN8484_c0_g1:2502	si_s201	TRINITY_DN8484_c0_g1	2492	2511	2502	-33.60	-22.10	0.657738095238095	8	2-5,2510-2507;7-13,2505-2499;15-21,2498-2492	1-1,2511-2511[UP5];6-6,2506-2506[SIL];14-14,x-x[BULq]	(((((((-(((((((.((((.&.)))).))))))).)))))))	GCGCGGC-GGUACGUCCCAGC&UUUGGAAUGUACCAGUUGUGU	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s201_TRINITY_DN8484_c0_g1_2502_TPlot.pdf
TRINITY_DN8484_c0_g1:715	si_a153	TRINITY_DN8484_c0_g1	705	725	715	-28.70	-18.90	0.658536585365854	9	1-7,725-719;8-15,717-710;17-18,709-708	x-x,718-718[BULt];16-16,x-x[BULq];19-21,707-705[UP3]	...((-((((((((.(((((((&)))))))-)))))))).))...	AACGA-UGACCUUGUAGACGAC&GUUGUUU-UAAGGUCAAUCUAU	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN8484_c0_g1_715_TPlot.pdf
TRINITY_DN8484_c0_g1:716	si_a152	TRINITY_DN8484_c0_g1	706	726	716	-29.20	-19.00	0.650684931506849	9	2-8,725-719;9-16,717-710;18-19,709-708	1-1,726-726[UP5];x-x,718-718[BULt];17-17,x-x[BULq];20-21,707-706[UP3]	..((-((((((((.(((((((.&.)))))))-)))))))).))..	ACGA-UGACCUUGUAGACGACG&UGUUGUUU-UAAGGUCAAUCUA	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN8484_c0_g1_716_TPlot.pdf
TRINITY_DN8485_c0_g1:1402	si_a119	TRINITY_DN8485_c0_g1	1391	1411	1402	-30.30	-20.00	0.66006600660066	9.5	1-1,1411-1411;3-12,1409-1400;14-17,1398-1395	2-2,1410-1410[SIL];13-13,1399-1399[SIL];18-21,1394-1391[UP3]	....((((.((((((((((.(&).)))))))))).))))....	AGCGGCUGGAAGACGAGCUGG&CGAGCUUGUUUUAUAGCAAUA	1	0.102301838462011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN8485_c0_g1_1402_TPlot.pdf
TRINITY_DN8485_c0_g1:1859	si_s80	TRINITY_DN8485_c0_g1	1848	1868	1859	-28.20	-19.10	0.677304964539007	8	1-10,1868-1859;12-20,1857-1849	11-11,1858-1858[SIL];21-21,1848-1848[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	UGAGAAGGAACGAGAGGAGGA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8485_c0_g1_1859_TPlot.pdf
TRINITY_DN848_c1_g4:202	si_a443	TRINITY_DN848_c1_g4	191	211	202	-30.00	-20.40	0.68	8.5	2-4,210-208;7-11,205-201;14-21,198-191	1-1,211-211[UP5];5-6,207-206[SIL];12-13,200-199[SIL]	((((((((..(((((..(((.&.)))..)))))..))))))))	ACAGCAAUCUUCUCAGCUCCU&UGGAUAUGAGAUAAUUGUUGU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a443_TRINITY_DN848_c1_g4_202_TPlot.pdf
TRINITY_DN8495_c0_g1:1718	si_a230	TRINITY_DN8495_c0_g1	1707	1727	1718	-26.90	-20.10	0.747211895910781	7	3-8,1725-1720;11-21,1717-1707	1-2,1727-1726[UP5];9-10,1719-1718[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	UCGAAUUGAUUCCAGAAACGA&AUGUUUCUAUAAUCAAUUCGA	2	0.138735642273894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN8495_c0_g1_1718_TPlot.pdf
TRINITY_DN8495_c0_g1:2215	si_a497	TRINITY_DN8495_c0_g1	2204	2225	2215	-32.00	-20.90	0.653125	9.5	3-6,2223-2220;7-11,2218-2214;13-21,2212-2204	1-2,2225-2224[UP5];x-x,2219-2219[BULt];12-12,2213-2213[SIL]	(((((((((.(((((.((((..&..))))-))))).)))))))))	AAGGAAGGCAAAGAGUCGACUG&AUGUCG-UUUUUCGUCUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN8495_c0_g1_2215_TPlot.pdf
TRINITY_DN8496_c0_g1:1092	si_a67	TRINITY_DN8496_c0_g1	1081	1105	1092	-27.20	-17.90	0.658088235294118	12	1-3,1105-1103;4-12,1098-1090;14-21,1088-1081	x-x,1102-1099[BULt];13-13,1089-1089[SIL]	((((((((.(((((((((....(((&)))----))))))))).))))))))	GAGAGAUGUUUUGAAAGAAUUCGGC&GCU----UCUUUCAAAUUGUUUUUC	3	0.999999999999727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8496_c0_g1_1092_TPlot.pdf
TRINITY_DN8496_c0_g1:335	si_s101	TRINITY_DN8496_c0_g1	324	344	335	-32.50	-22.20	0.683076923076923	8	1-15,344-330	16-21,329-324[UP3]	......(((((((((((((((&)))))))))))))))......	AAUUAACUGAUCCGAAGUGAA&UUCGCUUCGGAUUGGAAAAUA	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s101_TRINITY_DN8496_c0_g1_335_TPlot.pdf
TRINITY_DN8496_c0_g1:336	si_s100	TRINITY_DN8496_c0_g1	325	345	336	-33.70	-25.10	0.744807121661721	7	1-16,345-330	17-21,329-325[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUUAACUGAUCCGAAGUGAAG&CUUCGCUUCGGAUUGGAAAAU	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s100_TRINITY_DN8496_c0_g1_336_TPlot.pdf
TRINITY_DN8496_c0_g1:337	si_s99	TRINITY_DN8496_c0_g1	326	346	337	-34.60	-26.50	0.765895953757225	6	1-17,346-330	18-21,329-326[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUAACUGAUCCGAAGUGAAGA&UCUUCGCUUCGGAUUGGAAAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s99_TRINITY_DN8496_c0_g1_337_TPlot.pdf
TRINITY_DN8496_c0_g1:338	si_s98	TRINITY_DN8496_c0_g1	327	347	338	-34.70	-26.70	0.769452449567723	6	2-18,346-330	1-1,347-347[UP5];19-21,329-327[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAACUGAUCCGAAGUGAAGAU&UUCUUCGCUUCGGAUUGGAAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN8496_c0_g1_338_TPlot.pdf
TRINITY_DN8496_c0_g1:339	si_s97	TRINITY_DN8496_c0_g1	328	348	339	-36.30	-26.70	0.735537190082645	7	3-19,346-330	1-2,348-347[UP5];20-21,329-328[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AACUGAUCCGAAGUGAAGAUG&CUUCUUCGCUUCGGAUUGGAA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN8496_c0_g1_339_TPlot.pdf
TRINITY_DN8496_c0_g1:340	si_s96	TRINITY_DN8496_c0_g1	329	349	340	-37.20	-26.70	0.717741935483871	8	4-20,346-330	1-3,349-347[UP5];21-21,329-329[UP3]	.(((((((((((((((((...&...))))))))))))))))).	ACUGAUCCGAAGUGAAGAUGU&UCUUCUUCGCUUCGGAUUGGA	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN8496_c0_g1_340_TPlot.pdf
TRINITY_DN8496_c0_g1:342	si_s94	TRINITY_DN8496_c0_g1	331	351	342	-35.50	-24.10	0.67887323943662	11.5	6-20,346-332	1-5,351-347[UP5];21-21,331-331[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAUCCGAAGUGAAGAUGUAC&CUUCUUCUUCGCUUCGGAUUG	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN8496_c0_g1_342_TPlot.pdf
TRINITY_DN8496_c0_g1:343	si_s93	TRINITY_DN8496_c0_g1	332	352	343	-34.80	-23.80	0.683908045977012	12.5	7-21,346-332	1-6,352-347[UP5]	(((((((((((((((......&......)))))))))))))))	GAUCCGAAGUGAAGAUGUACU&UCUUCUUCUUCGCUUCGGAUU	3	0.999999826576482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN8496_c0_g1_343_TPlot.pdf
TRINITY_DN8498_c0_g1:387	si_s888	TRINITY_DN8498_c0_g1	375	396	387	-26.80	-18.60	0.694029850746269	13.5	6-10,391-387;11-21,385-375	1-5,396-392[UP5];x-x,386-386[BULt]	(((((((((((.(((((.....&.....)))))-)))))))))))	GGGAGAGAGCCAUGUUUCAUAU&AAAAUAAAUA-GGCUUUCUCUU	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN8498_c0_g1_387_TPlot.pdf
TRINITY_DN8501_c0_g1:2308	si_a497	TRINITY_DN8501_c0_g1	2297	2319	2308	-32.00	-21.30	0.665625	12.5	1-4,2319-2316;5-8,2313-2310;10-20,2308-2298	x-x,2315-2314[BULt];9-9,2309-2309[SIL];21-21,2297-2297[UP3]	.(((((((((((.((((..((((&))))--)))).))))))))))).	CGGGAAGACGAGCGAUGCUGCGU&AUGU--CGUUUUUCGUCUUCCUU	2	0.999999999876378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN8501_c0_g1_2308_TPlot.pdf
TRINITY_DN8501_c0_g1:2310	si_a495	TRINITY_DN8501_c0_g1	2299	2321	2310	-31.90	-21.20	0.664576802507837	12	2-6,2320-2316;7-10,2313-2310;12-21,2308-2299	1-1,2321-2321[UP5];x-x,2315-2314[BULt];11-11,2309-2309[SIL]	((((((((((.((((..(((((.&.)))))--)))).))))))))))	GGAAGACGAGCGAUGCUGCGUAC&AUAUGU--CGUUUUUCGUCUUCC	2	0.999996115805695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN8501_c0_g1_2310_TPlot.pdf
TRINITY_DN8501_c0_g1:3521	si_a566	TRINITY_DN8501_c0_g1	3510	3530	3521	-36.40	-24.90	0.684065934065934	5.5	1-11,3530-3520;12-13,3518-3517;15-21,3516-3510	x-x,3519-3519[BULt];14-14,x-x[BULq]	(((((((-((.(((((((((((&)))))))))))-)).)))))))	AGAUGUA-GAUUUCGCGGGGAG&CUCCCCGUGAA-UCGUAUGUUU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a566_TRINITY_DN8501_c0_g1_3521_TPlot.pdf
TRINITY_DN8501_c0_g1:3522	si_a565	TRINITY_DN8501_c0_g1	3511	3531	3522	-37.40	-25.70	0.687165775401069	5.5	1-12,3531-3520;13-14,3518-3517;16-21,3516-3511	x-x,3519-3519[BULt];15-15,x-x[BULq]	((((((-((.((((((((((((&))))))))))))-)).))))))	GAUGUA-GAUUUCGCGGGGAGA&UCUCCCCGUGAA-UCGUAUGUU	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN8501_c0_g1_3522_TPlot.pdf
TRINITY_DN8501_c0_g1:3526	si_a561	TRINITY_DN8501_c0_g1	3514	3535	3526	-35.40	-23.70	0.669491525423729	11.5	5-16,3531-3520;17-18,3518-3517	1-4,3535-3532[UP5];x-x,3519-3519[BULt];19-21,3516-3514[UP3]	...((.((((((((((((....&....))))))))))))-))...	GUAGAUUUCGCGGGGAGAGUCG&UUUAUCUCCCCGUGAA-UCGUA	3	0.89848577066474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a561_TRINITY_DN8501_c0_g1_3526_TPlot.pdf
TRINITY_DN8501_c0_g1:3562	si_a760	TRINITY_DN8501_c0_g1	3550	3571	3562	-31.10	-21.20	0.681672025723473	13	2-10,3570-3562;15-21,3556-3550	1-1,3571-3571[UP5];11-14,3561-3557[AILt]	(((((((.....(((((((((.&.)))))))))-....)))))))	GUCGAUCCAGCUGCCCGGAGGU&UCCUUUGGGU-UUUUGAUUGAU	4	0.999958677919561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN8501_c0_g1_3562_TPlot.pdf
TRINITY_DN8501_c0_g1:3592	si_a498	TRINITY_DN8501_c0_g1	3581	3599	3592	-33.50	-22.20	0.662686567164179	7.5	1-6,3599-3594;9-21,3593-3581	7-8,x-x[BULq]	(((((((((((((--((((((&))))))..)))))))))))))	CAAGGAAGGUGGA--ACGGCA&UGUCGUUUUUCGUCUUCCUUG	4	0.999999999999713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN8501_c0_g1_3592_TPlot.pdf
TRINITY_DN8503_c0_g1:685	si_a552	TRINITY_DN8503_c0_g1	674	694	685	-33.10	-21.90	0.661631419939577	5	1-16,694-679;18-19,677-676	17-17,678-678[SIL];20-21,675-674[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	CAGGAAGAUGAAGGAAUAGAU&AUCUAUUUCUUUAUCUCCCCG	4	0.999674411961908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN8503_c0_g1_685_TPlot.pdf
TRINITY_DN8503_c0_g1:688	si_a549	TRINITY_DN8503_c0_g1	676	697	688	-29.50	-21.90	0.742372881355932	7.5	4-19,694-679;20-21,677-676	1-3,697-695[UP5];x-x,678-678[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	GGAAGAUGAAGGAAUAGAUAAA&UCAAUCUAUUUCUUUAUCU-CC	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN8503_c0_g1_688_TPlot.pdf
TRINITY_DN8503_c0_g1:785	si_a178	TRINITY_DN8503_c0_g1	774	795	785	-32.90	-22.42	0.68145896656535	11	1-3,795-793;5-9,791-787;13-21,782-774	4-4,792-792[SIL];10-12,786-783[AILt]	(((((((((....(((((.(((&))).)))))-...)))))))))	GGAAAGAUACAAUUCUGGUCGG&CCGUCUAGA-UAAUAUCUUUCC	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a178_TRINITY_DN8503_c0_g1_785_TPlot.pdf
TRINITY_DN8504_c0_g5:441	si_a785	TRINITY_DN8504_c0_g5	427	450	441	-25.90	-16.90	0.652509652509653	7	2-10,449-441;11-18,439-432;19-21,429-427	1-1,450-450[UP5];x-x,440-440[BULt];x-x,431-430[BULt]	(((..((((((((.(((((((((.&.)))))))))-))))))))--)))	GAGCCGAUAGAAAUAGUAGAAGAA&CUCUUCUAUU-UUUCUAUU--UUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN8504_c0_g5_441_TPlot.pdf
TRINITY_DN8509_c0_g4:1083	si_s793	TRINITY_DN8509_c0_g4	1072	1095	1083	-30.50	-20.00	0.655737704918033	8	1-6,1095-1090;7-17,1086-1076;19-21,1074-1072	x-x,1089-1087[BULt];18-18,1075-1075[SIL]	(((.(((((((((((...((((((&))))))---))))))))))).)))	GAAAGUGAAAUACGACAAGCUUGU&ACAAGC---UCGUAUUUUAUCUUC	4	0.996503547423829	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN8509_c0_g4_1083_TPlot.pdf
TRINITY_DN850_c0_g1:191	si_a291	TRINITY_DN850_c0_g1	179	200	191	-27.70	-19.80	0.714801444043321	7	1-14,200-187;15-17,185-183	x-x,186-186[BULt];18-21,182-179[UP3]	....(((.((((((((((((((&))))))))))))))-)))....	GCACCUUCUUUUGAAUCCAGGC&GCUUGGAUUUAAAA-AAGAUUC	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN850_c0_g1_191_TPlot.pdf
TRINITY_DN850_c0_g1:194	si_a288	TRINITY_DN850_c0_g1	182	203	194	-28.20	-19.90	0.705673758865248	8.5	4-17,200-187;18-20,185-183	1-3,203-201[UP5];x-x,186-186[BULt];21-21,182-182[UP3]	.(((.((((((((((((((...&...))))))))))))))-))).	CCUUCUUUUGAAUCCAGGCAGU&AUCGCUUGGAUUUAAAA-AAGA	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a288_TRINITY_DN850_c0_g1_194_TPlot.pdf
TRINITY_DN850_c0_g1:197	si_a285	TRINITY_DN850_c0_g1	186	206	197	-28.30	-18.80	0.664310954063604	13.5	7-20,200-187	1-6,206-201[UP5];21-21,186-186[UP3]	.((((((((((((((......&......)))))))))))))).	CUUUUGAAUCCAGGCAGUGGA&AAGAUCGCUUGGAUUUAAAAA	3	0.999913265931978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a285_TRINITY_DN850_c0_g1_197_TPlot.pdf
TRINITY_DN850_c0_g1:2093	si_a759	TRINITY_DN850_c0_g1	2082	2102	2093	-32.60	-21.40	0.656441717791411	9.5	1-7,2102-2096;10-21,2093-2082	8-9,2095-2094[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	UUGGUCGAGGACGAGGAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.999973919801513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN850_c0_g1_2093_TPlot.pdf
TRINITY_DN850_c0_g1:2094	si_a758	TRINITY_DN850_c0_g1	2083	2103	2094	-34.00	-23.50	0.691176470588235	9.5	1-8,2103-2096;11-20,2093-2084	9-10,2095-2094[SIL];21-21,2083-2083[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	UGGUCGAGGACGAGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN850_c0_g1_2094_TPlot.pdf
TRINITY_DN850_c0_g1:2096	si_s92	TRINITY_DN850_c0_g1	2084	2105	2096	-34.90	-25.60	0.73352435530086	7.5	1-13,2105-2093;14-19,2091-2086	x-x,2092-2092[BULt];20-21,2085-2084[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	GGUCGAGGACGAGGAGGAGGAG&UUCUUCUUCUUCG-CUUCGGAU	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN850_c0_g1_2096_TPlot.pdf
TRINITY_DN850_c0_g1:2110	si_s77	TRINITY_DN850_c0_g1	2099	2119	2110	-25.50	-23.40	0.917647058823529	8.5	2-21,2118-2099	1-1,2119-2119[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GGAGGAGGGAGAGGAGGAGGU&UUUUUUUUCUUUCCUUUCUUC	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN850_c0_g1_2110_TPlot.pdf
TRINITY_DN850_c0_g1:2111	si_s76	TRINITY_DN850_c0_g1	2100	2120	2111	-23.60	-21.10	0.89406779661017	10.5	3-21,2118-2100	1-2,2120-2119[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAGGAGGGAGAGGAGGAGGUG&AUUUUUUUUCUUUCCUUUCUU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN850_c0_g1_2111_TPlot.pdf
TRINITY_DN850_c0_g1:2114	si_a552	TRINITY_DN850_c0_g1	2102	2123	2114	-33.10	-23.30	0.70392749244713	9	2-12,2122-2112;14-19,2110-2105;20-20,2103-2103	1-1,2123-2123[UP5];13-13,2111-2111[SIL];x-x,2104-2104[BULt];21-21,2102-2102[UP3]	.(.((((((.(((((((((((.&.))))))))))).))))))-).	GGAGGGAGAGGAGGAGGUGGAA&AUCUAUUUCUUUAUCUCCC-CG	3	0.944693903457806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN850_c0_g1_2114_TPlot.pdf
TRINITY_DN850_c0_g1:2115	si_a551	TRINITY_DN850_c0_g1	2104	2124	2115	-31.60	-23.20	0.734177215189873	9.5	3-13,2122-2112;15-20,2110-2105	1-2,2124-2123[UP5];14-14,2111-2111[SIL];21-21,2104-2104[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	AGGGAGAGGAGGAGGUGGAAG&AAUCUAUUUCUUUAUCUCCCC	4	0.847173910145478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN850_c0_g1_2115_TPlot.pdf
TRINITY_DN850_c0_g1:2116	si_a550	TRINITY_DN850_c0_g1	2105	2125	2116	-30.90	-23.20	0.750809061488673	10.5	4-14,2122-2112;16-21,2110-2105	1-3,2125-2123[UP5];15-15,2111-2111[SIL]	((((((.(((((((((((...&...))))))))))).))))))	GGGAGAGGAGGAGGUGGAAGA&CAAUCUAUUUCUUUAUCUCCC	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN850_c0_g1_2116_TPlot.pdf
TRINITY_DN850_c0_g1:2117	si_a549	TRINITY_DN850_c0_g1	2106	2126	2117	-29.50	-19.90	0.674576271186441	12	5-15,2122-2112;17-21,2110-2106	1-4,2126-2123[UP5];16-16,2111-2111[SIL]	(((((.(((((((((((....&....))))))))))).)))))	GGAGAGGAGGAGGUGGAAGAU&UCAAUCUAUUUCUUUAUCUCC	2	0.954345126081691	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN850_c0_g1_2117_TPlot.pdf
TRINITY_DN850_c0_g1:2121	si_s806	TRINITY_DN850_c0_g1	2110	2128	2121	-28.60	-19.40	0.678321678321678	7.5	2-8,2127-2121;11-21,2120-2110	1-1,2128-2128[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	AGGAGGAGGUG--GAAGAUAU&UUAUCUUCGUUACCUUUUCUU	2	0.999988530050541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN850_c0_g1_2121_TPlot.pdf
TRINITY_DN850_c0_g1:2125	si_a785	TRINITY_DN850_c0_g1	2114	2135	2125	-25.90	-19.10	0.737451737451738	9	1-4,2135-2132;6-9,2130-2127;10-21,2125-2114	5-5,2131-2131[SIL];x-x,2126-2126[BULt]	((((((((((((.((((.((((&)))).))))-))))))))))))	GGAGGUGGAAGAUAUGGUGGAG&CUCUUCUAU-UUUUCUAUUUUC	2	0.997809236631373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN850_c0_g1_2125_TPlot.pdf
TRINITY_DN850_c0_g1:2127	si_a784	TRINITY_DN850_c0_g1	2115	2136	2127	-24.70	-17.00	0.688259109311741	10	2-5,2135-2132;7-10,2130-2127;11-21,2125-2115	1-1,2136-2136[UP5];6-6,2131-2131[SIL];x-x,2126-2126[BULt]	(((((((((((.((((.((((.&.)))).))))-)))))))))))	GAGGUGGAAGAUAUGGUGGAGG&ACUCUUCUAU-UUUUCUAUUUU	2	0.9999998041018	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN850_c0_g1_2127_TPlot.pdf
TRINITY_DN850_c0_g1:348	si_s84	TRINITY_DN850_c0_g1	337	357	348	-32.30	-23.10	0.715170278637771	7.5	1-16,357-342	17-21,341-337[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUACAGAGAAGGAAGGAGAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN850_c0_g1_348_TPlot.pdf
TRINITY_DN850_c0_g1:353	si_s79	TRINITY_DN850_c0_g1	342	362	353	-26.20	-25.70	0.980916030534351	6	3-21,360-342	1-2,362-361[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAGAAGGAAGGAGAGAAGAUG&UUUUUUCUUUCCUUUCUUCUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN850_c0_g1_353_TPlot.pdf
TRINITY_DN850_c0_g1:354	si_s74	TRINITY_DN850_c0_g1	343	363	354	-25.00	-24.30	0.972	6	1-20,363-344	21-21,343-343[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	AGAAGGAAGGAGAGAAGAUGG&CUAUUUUUUUUCUUUCCUUUC	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN850_c0_g1_354_TPlot.pdf
TRINITY_DN850_c0_g1:355	si_s73	TRINITY_DN850_c0_g1	344	364	355	-24.00	-24.20	1	6	2-21,363-344	1-1,364-364[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	GAAGGAAGGAGAGAAGAUGGG&UCUAUUUUUUUUCUUUCCUUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN850_c0_g1_355_TPlot.pdf
TRINITY_DN850_c0_g1:358	si_s70	TRINITY_DN850_c0_g1	347	367	358	-25.80	-22.70	0.87984496124031	8	3-21,365-347	1-2,367-366[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GGAAGGAGAGAAGAUGGGAAU&ACUUCUAUUUUUUUUCUUUCC	2	0.210595825696975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN850_c0_g1_358_TPlot.pdf
TRINITY_DN850_c0_g1:402	si_s72	TRINITY_DN850_c0_g1	391	412	402	-24.10	-15.80	0.655601659751037	9.5	1-3,412-410;4-11,408-401;13-19,399-393	x-x,409-409[BULt];12-12,400-400[SIL];20-21,392-391[UP3]	..(((((((.((((((((.(((&)))-)))))))).)))))))..	UUGGAGAGACGGAAAAUGCGAA&UUC-UAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN850_c0_g1_402_TPlot.pdf
TRINITY_DN850_c0_g1:449	si_s768	TRINITY_DN850_c0_g1	439	458	449	-26.80	-17.50	0.652985074626866	7	2-10,457-449;12-14,447-445;16-21,444-439	1-1,458-458[UP5];11-11,448-448[SIL];15-15,x-x[BULq]	((((((-(((.(((((((((.&.))))))))).))).))))))	UGGCAA-GGUUAUUGGUCGUG&AACGAUUAAUUACUAUUGCUA	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN850_c0_g1_449_TPlot.pdf
TRINITY_DN850_c0_g1:883	si_s563	TRINITY_DN850_c0_g1	872	892	883	-30.80	-20.10	0.652597402597403	16	7-18,886-875	1-6,892-887[UP5];19-21,874-872[UP3]	...((((((((((((......&......))))))))))))...	AAGCCUUGUCCUGAGUUUUAC&AAUAUUUUCGGGACAAGGAAU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN850_c0_g1_883_TPlot.pdf
TRINITY_DN850_c1_g1:1010	si_a347	TRINITY_DN850_c1_g1	999	1019	1010	-23.50	-15.60	0.663829787234043	9.5	1-4,1019-1016;7-11,1013-1009;14-21,1006-999	5-6,1015-1014[SIL];12-13,1008-1007[SIL]	((((((((..(((((..((((&))))..)))))..))))))))	GAGUGGAAAAGAUAUGGUCGG&CCGAAAAUAUUAAUUCUAUUU	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a347_TRINITY_DN850_c1_g1_1010_TPlot.pdf
TRINITY_DN850_c1_g1:1101	si_s814	TRINITY_DN850_c1_g1	1090	1110	1101	-26.60	-19.40	0.729323308270677	8.5	1-14,1110-1097	15-21,1096-1090[UP3]	.......((((((((((((((&)))))))))))))).......	GAACAACUGAGAAAAGGUGAC&GUUACCUUUUCUUAAUAAUGA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN850_c1_g1_1101_TPlot.pdf
TRINITY_DN850_c1_g1:1102	si_s813	TRINITY_DN850_c1_g1	1091	1111	1102	-27.10	-21.80	0.804428044280443	7.5	1-15,1111-1097	16-21,1096-1091[UP3]	......(((((((((((((((&)))))))))))))))......	AACAACUGAGAAAAGGUGACG&CGUUACCUUUUCUUAAUAAUG	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN850_c1_g1_1102_TPlot.pdf
TRINITY_DN850_c1_g1:1103	si_s812	TRINITY_DN850_c1_g1	1092	1112	1103	-26.40	-22.00	0.833333333333333	7	1-16,1112-1097	17-21,1096-1092[UP3]	.....((((((((((((((((&)))))))))))))))).....	ACAACUGAGAAAAGGUGACGG&UCGUUACCUUUUCUUAAUAAU	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN850_c1_g1_1103_TPlot.pdf
TRINITY_DN850_c1_g1:1104	si_s811	TRINITY_DN850_c1_g1	1093	1113	1104	-26.40	-22.50	0.852272727272727	7	1-17,1113-1097	18-21,1096-1093[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAACUGAGAAAAGGUGACGGG&UUCGUUACCUUUUCUUAAUAA	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN850_c1_g1_1104_TPlot.pdf
TRINITY_DN850_c1_g1:1106	si_s809	TRINITY_DN850_c1_g1	1095	1115	1106	-28.50	-22.60	0.792982456140351	8.5	3-19,1113-1097	1-2,1115-1114[UP5];20-21,1096-1095[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACUGAGAAAAGGUGACGGGCC&UCUUCGUUACCUUUUCUUAAU	3	0.572688560259617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN850_c1_g1_1106_TPlot.pdf
TRINITY_DN850_c1_g1:1107	si_s808	TRINITY_DN850_c1_g1	1096	1116	1107	-28.60	-22.60	0.79020979020979	9.5	4-20,1113-1097	1-3,1116-1114[UP5];21-21,1096-1096[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUGAGAAAAGGUGACGGGCCA&AUCUUCGUUACCUUUUCUUAA	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN850_c1_g1_1107_TPlot.pdf
TRINITY_DN850_c1_g1:1108	si_s807	TRINITY_DN850_c1_g1	1097	1117	1108	-28.90	-22.30	0.771626297577855	10.5	5-21,1113-1097	1-4,1117-1114[UP5]	(((((((((((((((((....&....)))))))))))))))))	UGAGAAAAGGUGACGGGCCAA&UAUCUUCGUUACCUUUUCUUA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN850_c1_g1_1108_TPlot.pdf
TRINITY_DN850_c1_g1:1110	si_s805	TRINITY_DN850_c1_g1	1099	1119	1110	-28.60	-20.00	0.699300699300699	14	7-21,1113-1099	1-6,1119-1114[UP5]	(((((((((((((((......&......)))))))))))))))	AGAAAAGGUGACGGGCCAAUU&UUUAUCUUCGUUACCUUUUCU	2	0.998668369541685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN850_c1_g1_1110_TPlot.pdf
TRINITY_DN850_c1_g1:1561	si_a111	TRINITY_DN850_c1_g1	1550	1570	1561	-26.20	-19.10	0.729007633587786	7.5	1-5,1570-1566;7-17,1564-1554	6-6,1565-1565[SIL];18-21,1553-1550[UP3]	....(((((((((((.(((((&))))).)))))))))))....	GACCACAGGCUCGUGAUUUAU&AUAAAAUACGAGCUUGUUUUA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN850_c1_g1_1561_TPlot.pdf
TRINITY_DN850_c1_g1:1562	si_a110	TRINITY_DN850_c1_g1	1551	1571	1562	-27.80	-19.40	0.697841726618705	7.5	2-6,1570-1566;8-18,1564-1554	1-1,1571-1571[UP5];7-7,1565-1565[SIL];19-21,1553-1551[UP3]	...(((((((((((.(((((.&.))))).)))))))))))...	ACCACAGGCUCGUGAUUUAUA&GAUAAAAUACGAGCUUGUUUU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN850_c1_g1_1562_TPlot.pdf
TRINITY_DN850_c1_g1:1563	si_a109	TRINITY_DN850_c1_g1	1552	1572	1563	-28.50	-19.40	0.680701754385965	8.5	3-7,1570-1566;9-19,1564-1554	1-2,1572-1571[UP5];8-8,1565-1565[SIL];20-21,1553-1552[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	CCACAGGCUCGUGAUUUAUAU&AGAUAAAAUACGAGCUUGUUU	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN850_c1_g1_1563_TPlot.pdf
TRINITY_DN850_c1_g1:1564	si_a108	TRINITY_DN850_c1_g1	1553	1573	1564	-28.50	-19.40	0.680701754385965	9.5	4-8,1570-1566;10-20,1564-1554	1-3,1573-1571[UP5];9-9,1565-1565[SIL];21-21,1553-1553[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	CACAGGCUCGUGAUUUAUAUA&AAGAUAAAAUACGAGCUUGUU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a108_TRINITY_DN850_c1_g1_1564_TPlot.pdf
TRINITY_DN850_c1_g1:2113	si_a887	TRINITY_DN850_c1_g1	2102	2122	2113	-22.90	-14.90	0.650655021834061	9	1-13,2122-2110	14-21,2109-2102[UP3]	........(((((((((((((&)))))))))))))........	GCAAAGCAACUAUAUUGGUUG&CAAUCAAUAUAGUAAUAAUAA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a887_TRINITY_DN850_c1_g1_2113_TPlot.pdf
TRINITY_DN850_c1_g1:2116	si_a884	TRINITY_DN850_c1_g1	2105	2125	2116	-25.60	-20.90	0.81640625	6	1-16,2125-2110	17-21,2109-2105[UP3]	.....((((((((((((((((&)))))))))))))))).....	AAGCAACUAUAUUGGUUGCAA&UUGCAAUCAAUAUAGUAAUAA	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a884_TRINITY_DN850_c1_g1_2116_TPlot.pdf
TRINITY_DN850_c1_g1:2571	si_a286	TRINITY_DN850_c1_g1	2560	2580	2571	-28.30	-18.40	0.65017667844523	11	2-9,2579-2572;11-15,2570-2566	1-1,2580-2580[UP5];10-10,2571-2571[SIL];16-21,2565-2560[UP3]	......(((((.((((((((.&.)))))))).)))))......	UGGAGGAAAUCGAGGCGGUCG&AGAUCGCUUGGAUUUAAAAAA	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN850_c1_g1_2571_TPlot.pdf
TRINITY_DN850_c1_g1:291	si_s79	TRINITY_DN850_c1_g1	277	300	291	-26.20	-18.90	0.721374045801527	8.5	1-13,300-288;14-21,284-277	x-x,287-285[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	AAGGGGGAUUCAGGAAAGGGGGAA&UUUUUUCUUUCCU---UUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN850_c1_g1_291_TPlot.pdf
TRINITY_DN850_c1_g1:292	si_s78	TRINITY_DN850_c1_g1	278	301	292	-26.20	-18.80	0.717557251908397	8.5	1-14,301-288;15-21,284-278	x-x,287-285[BULt]	(((((((...((((((((((((((&))))))))))))))---)))))))	AGGGGGAUUCAGGAAAGGGGGAAA&UUUUUUUCUUUCCU---UUCUUCU	2	0.999999999996017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN850_c1_g1_292_TPlot.pdf
TRINITY_DN850_c1_g1:293	si_s77	TRINITY_DN850_c1_g1	279	302	293	-25.50	-17.60	0.690196078431373	9.5	2-15,301-288;16-21,284-279	1-1,302-302[UP5];x-x,287-285[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	GGGGGAUUCAGGAAAGGGGGAAAC&UUUUUUUUCUUUCCU---UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN850_c1_g1_293_TPlot.pdf
TRINITY_DN850_c1_g1:307	si_a142	TRINITY_DN850_c1_g1	296	316	307	-23.50	-16.30	0.693617021276596	14	6-19,311-298	1-5,316-312[UP5];20-21,297-296[UP3]	..((((((((((((((.....&.....))))))))))))))..	GGGAAACAGCAAUGGUGGUUU&AAUUAAUCGUUGUUGUUUUAA	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN850_c1_g1_307_TPlot.pdf
TRINITY_DN850_c1_g1:311	si_s770	TRINITY_DN850_c1_g1	300	319	311	-26.60	-17.80	0.669172932330827	10	1-3,319-317;6-18,315-303	4-5,316-316[AILq];19-21,302-300[UP3]	...(((((((((((((.-(((&)))..)))))))))))))...	AACAGCAAUGGUGGUUU-UCG&CGAUUAAUUACUAUUGCUAUA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN850_c1_g1_311_TPlot.pdf
TRINITY_DN850_c1_g1:313	si_s768	TRINITY_DN850_c1_g1	302	321	313	-26.80	-17.80	0.664179104477612	10.5	3-5,319-317;8-20,315-303	1-2,321-320[UP5];6-7,316-316[AILq];21-21,302-302[UP3]	.(((((((((((((.-(((..&..)))..))))))))))))).	CAGCAAUGGUGGUUU-UCGAG&AACGAUUAAUUACUAUUGCUA	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN850_c1_g1_313_TPlot.pdf
TRINITY_DN850_c1_g1:374	si_s71	TRINITY_DN850_c1_g1	363	393	374	-25.70	-17.70	0.688715953307393	25.5	1-7,393-387;8-20,376-364	x-x,386-377[BULt];21-21,363-363[UP3]	.(((((((((((((..........(((((((&)))))))----------))))))))))))).	UGGAAAGGAAGAGACAAAUAUGAAAUGGGAG&CUUCUAU----------UUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN850_c1_g1_374_TPlot.pdf
TRINITY_DN850_c1_g1:375	si_s70	TRINITY_DN850_c1_g1	364	394	375	-25.80	-17.50	0.678294573643411	25.5	2-8,393-387;9-21,376-364	1-1,394-394[UP5];x-x,386-377[BULt]	(((((((((((((..........(((((((.&.)))))))----------)))))))))))))	GGAAAGGAAGAGACAAAUAUGAAAUGGGAGG&ACUUCUAU----------UUUUUUUCUUUCC	2	0.999999999992761	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN850_c1_g1_375_TPlot.pdf
TRINITY_DN850_c1_g1:988	si_a538	TRINITY_DN850_c1_g1	978	997	988	-34.70	-22.60	0.651296829971182	8.5	2-11,996-987;13-18,986-981	1-1,997-997[UP5];12-12,x-x[BULq];19-21,980-978[UP3]	...((((((-((((((((((.&.)))))))))).))))))...	UCAAGGUUG-GCCGAUUGCUA&GAGCGAUCGGUUCAAUCUAUU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a538_TRINITY_DN850_c1_g1_988_TPlot.pdf
TRINITY_DN8510_c0_g1:1392	si_a784	TRINITY_DN8510_c0_g1	1381	1402	1392	-24.70	-16.30	0.659919028340081	10	2-6,1401-1397;7-17,1395-1385	1-1,1402-1402[UP5];x-x,1396-1396[BULt];18-21,1384-1381[UP3]	....(((((((((((.(((((.&.)))))-)))))))))))....	ACGUUGGAGAAAUAGUGGGAGG&ACUCUU-CUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8510_c0_g1_1392_TPlot.pdf
TRINITY_DN8510_c0_g1:1551	si_a177	TRINITY_DN8510_c0_g1	1536	1561	1551	-32.90	-21.70	0.659574468085106	13	1-6,1561-1556;8-12,1553-1549;13-21,1544-1536	7-7,1555-1554[AILt];x-x,1548-1545[BULt]	(((((((((....(((((..((((((&))))))-.)))))----)))))))))	GAAAGAUAUUUGUUAUUUUUGACGGG&CCCGUC-UAGAUA----AUAUCUUUC	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a177_TRINITY_DN8510_c0_g1_1551_TPlot.pdf
TRINITY_DN8514_c0_g1:35	si_a352	TRINITY_DN8514_c0_g1	23	44	35	-22.50	-14.90	0.662222222222222	7.5	3-17,42-28;18-21,26-23	1-2,44-43[UP5];x-x,27-27[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GGUUAAGAAUAGAAUUGAUGAA&AAUAUUAAUUCUAUUUU-GAUC	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN8514_c0_g1_35_TPlot.pdf
TRINITY_DN851_c0_g1:1878	si_a205	TRINITY_DN851_c0_g1	1864	1887	1878	-24.70	-17.00	0.688259109311741	10.5	1-11,1887-1877;12-19,1873-1866	x-x,1876-1874[BULt];20-21,1865-1864[UP3]	..((((((((...(((((((((((&)))))))))))---))))))))..	UAAGUUAGUUUAAGAUUUGUUAGU&ACUAAUAAAUC---GACUAAUUAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN851_c0_g1_1878_TPlot.pdf
TRINITY_DN851_c0_g1:1879	si_a204	TRINITY_DN851_c0_g1	1865	1888	1879	-26.30	-19.90	0.756653992395437	9	1-12,1888-1877;13-20,1873-1866	x-x,1876-1874[BULt];21-21,1865-1865[UP3]	.((((((((...((((((((((((&))))))))))))---)))))))).	AAGUUAGUUUAAGAUUUGUUAGUG&CACUAAUAAAUC---GACUAAUUA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a204_TRINITY_DN851_c0_g1_1879_TPlot.pdf
TRINITY_DN851_c0_g1:1880	si_a203	TRINITY_DN851_c0_g1	1866	1889	1880	-26.90	-21.20	0.788104089219331	5	1-13,1889-1877;14-21,1873-1866	x-x,1876-1874[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	AGUUAGUUUAAGAUUUGUUAGUGA&UCACUAAUAAAUC---GACUAAUU	2	0.0366499622781542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a203_TRINITY_DN851_c0_g1_1880_TPlot.pdf
TRINITY_DN851_c0_g1:1881	si_a202	TRINITY_DN851_c0_g1	1867	1890	1881	-27.00	-21.30	0.788888888888889	5	1-14,1890-1877;15-21,1873-1867	x-x,1876-1874[BULt]	(((((((...((((((((((((((&))))))))))))))---)))))))	GUUAGUUUAAGAUUUGUUAGUGAA&UUCACUAAUAAAUC---GACUAAU	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a202_TRINITY_DN851_c0_g1_1881_TPlot.pdf
TRINITY_DN851_c0_g1:1882	si_a201	TRINITY_DN851_c0_g1	1868	1891	1882	-28.60	-20.00	0.699300699300699	5.5	2-15,1890-1877;16-21,1873-1868	1-1,1891-1891[UP5];x-x,1876-1874[BULt]	((((((...((((((((((((((.&.))))))))))))))---))))))	UUAGUUUAAGAUUUGUUAGUGAAA&GUUCACUAAUAAAUC---GACUAA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN851_c0_g1_1882_TPlot.pdf
TRINITY_DN851_c0_g1:1883	si_a200	TRINITY_DN851_c0_g1	1869	1892	1883	-29.20	-19.20	0.657534246575342	7.5	3-16,1890-1877;17-21,1873-1869	1-2,1892-1891[UP5];x-x,1876-1874[BULt]	(((((...((((((((((((((..&..))))))))))))))---)))))	UAGUUUAAGAUUUGUUAGUGAAAA&UGUUCACUAAUAAAUC---GACUA	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a200_TRINITY_DN851_c0_g1_1883_TPlot.pdf
TRINITY_DN8522_c0_g1:1259	si_a356	TRINITY_DN8522_c0_g1	1248	1268	1259	-26.90	-17.80	0.661710037174721	12.5	5-13,1264-1256;15-19,1254-1250	1-4,1268-1265[UP5];14-14,1255-1255[SIL];20-21,1249-1248[UP3]	..(((((.(((((((((....&....))))))))).)))))..	AACCGAUGGAAGUGGAAGCAG&UUAAUUCUAUUUUGAUCGGAU	3	0.99970778833738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN8522_c0_g1_1259_TPlot.pdf
TRINITY_DN8522_c0_g1:1260	si_a355	TRINITY_DN8522_c0_g1	1249	1269	1260	-26.80	-17.80	0.664179104477612	13.5	6-14,1264-1256;16-20,1254-1250	1-5,1269-1265[UP5];15-15,1255-1255[SIL];21-21,1249-1249[UP3]	.(((((.(((((((((.....&.....))))))))).))))).	ACCGAUGGAAGUGGAAGCAGC&AUUAAUUCUAUUUUGAUCGGA	3	0.99778753066321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN8522_c0_g1_1260_TPlot.pdf
TRINITY_DN8522_c0_g1:461	si_a129	TRINITY_DN8522_c0_g1	448	470	461	-25.20	-17.60	0.698412698412698	7.5	1-10,470-461;11-13,458-456;15-21,454-448	x-x,460-459[BULt];14-14,455-455[SIL]	(((((((.(((..((((((((((&))))))))))--))).)))))))	GAUUGAUGGCUUUAUUGCUGUAG&UUAUAGCAAU--AGUAAUUAAUC	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a129_TRINITY_DN8522_c0_g1_461_TPlot.pdf
TRINITY_DN8522_c0_g1:99	si_a410	TRINITY_DN8522_c0_g1	88	108	99	-17.80	-12.00	0.674157303370786	10.5	2-15,107-94	1-1,108-108[UP5];16-21,93-88[UP3]	......((((((((((((((.&.))))))))))))))......	GUAAUAUAGAUGUAGGCAAAU&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8522_c0_g1_99_TPlot.pdf
TRINITY_DN8523_c0_g1:910	si_a403	TRINITY_DN8523_c0_g1	899	919	910	-22.00	-14.40	0.654545454545455	6	1-11,919-909;14-21,906-899	12-13,908-907[SIL]	((((((((..(((((((((((&)))))))))))..))))))))	AGGUGUGACGAAAACAAUUUU&AGAAUUGUUUUGUUUAUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN8523_c0_g1_910_TPlot.pdf
TRINITY_DN8526_c0_g1:1716	si_s63	TRINITY_DN8526_c0_g1	1705	1724	1716	-25.80	-17.80	0.689922480620155	8.5	3-7,1722-1718;9-20,1717-1706	1-2,1724-1723[UP5];8-8,x-x[BULq];21-21,1705-1705[UP3]	.((((((((((((-(((((..&..))))).)))))))))))).	CGAGAGGUGGAAG-UGCUAUA&GUUAGCAACUUCUAUUUUUUU	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN8526_c0_g1_1716_TPlot.pdf
TRINITY_DN8526_c1_g1:142	si_a479	TRINITY_DN8526_c1_g1	131	151	142	-23.00	-15.00	0.652173913043478	11.5	3-16,149-136	1-2,151-150[UP5];17-21,135-131[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUCAGUCUGUAUGACGAUGCC&AUUAUUGUUAUAUAGAAUAUG	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN8526_c1_g1_142_TPlot.pdf
TRINITY_DN8527_c0_g1:2200	si_s636	TRINITY_DN8527_c0_g1	2188	2210	2200	-40.80	-28.60	0.700980392156863	9	1-5,2210-2206;6-6,2204-2204;8-12,2202-2198;13-21,2196-2188	x-x,2205-2205[BULt];7-7,2203-2203[SIL];x-x,2197-2197[BULt]	(((((((((.(((((.(.(((((&)))))-).)))))-)))))))))	UCGAGGGCAUGACGUGUCACGGA&UUCGU-AGGCGUU-UGCCCUCGA	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s636_TRINITY_DN8527_c0_g1_2200_TPlot.pdf
TRINITY_DN8527_c0_g1:2202	si_s634	TRINITY_DN8527_c0_g1	2190	2212	2202	-38.30	-25.10	0.655352480417755	9.5	2-7,2211-2206;8-8,2204-2204;10-14,2202-2198;15-21,2196-2190	1-1,2212-2212[UP5];x-x,2205-2205[BULt];9-9,2203-2203[SIL];x-x,2197-2197[BULt]	(((((((.(((((.(.((((((.&.))))))-).)))))-)))))))	GAGGGCAUGACGUGUCACGGAGU&UUUUCGU-AGGCGUU-UGCCCUC	3	0.999984480170049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN8527_c0_g1_2202_TPlot.pdf
TRINITY_DN8527_c0_g1:2493	si_s314	TRINITY_DN8527_c0_g1	2482	2502	2493	-31.50	-20.70	0.657142857142857	10.5	4-14,2499-2489;16-18,2487-2485	1-3,2502-2500[UP5];15-15,2488-2488[SIL];19-21,2484-2482[UP3]	...(((.(((((((((((...&...))))))))))).)))...	ACCGACCAGAGGGACAGAGAA&AAUUCUGUCCUUCUUGUUACA	3	0.999999800174655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN8527_c0_g1_2493_TPlot.pdf
TRINITY_DN8527_c0_g1:2494	si_s313	TRINITY_DN8527_c0_g1	2483	2503	2494	-30.80	-20.70	0.672077922077922	11.5	5-15,2499-2489;17-19,2487-2485	1-4,2503-2500[UP5];16-16,2488-2488[SIL];20-21,2484-2483[UP3]	..(((.(((((((((((....&....))))))))))).)))..	CCGACCAGAGGGACAGAGAAA&AAAUUCUGUCCUUCUUGUUAC	4	0.999986162919743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN8527_c0_g1_2494_TPlot.pdf
TRINITY_DN8527_c0_g1:2495	si_s312	TRINITY_DN8527_c0_g1	2484	2504	2495	-29.00	-20.70	0.713793103448276	12	6-16,2499-2489;18-20,2487-2485	1-5,2504-2500[UP5];17-17,2488-2488[SIL];21-21,2484-2484[UP3]	.(((.(((((((((((.....&.....))))))))))).))).	CGACCAGAGGGACAGAGAAAU&AAAAUUCUGUCCUUCUUGUUA	3	0.99891065771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN8527_c0_g1_2495_TPlot.pdf
TRINITY_DN852_c0_g1:1276	si_a149	TRINITY_DN852_c0_g1	1262	1285	1276	-29.40	-20.70	0.704081632653061	12.5	1-11,1285-1275;12-18,1271-1265	x-x,1274-1272[BULt];19-21,1264-1262[UP3]	...(((((((...(((((((((((&)))))))))))---)))))))...	GAAGAUCUUACACAAGCAGCGACG&CGUUGUUGUUU---UAAGGUCAAU	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN852_c0_g1_1276_TPlot.pdf
TRINITY_DN8534_c0_g1:385	si_s702	TRINITY_DN8534_c0_g1	373	395	385	-32.20	-21.10	0.65527950310559	9.5	1-6,395-390;7-18,388-377;19-21,375-373	x-x,389-389[BULt];x-x,376-376[BULt]	(((.((((((((((((.((((((&))))))-))))))))))))-)))	CUUCGUUCACUGGUGGUGUUGAC&GUCGAU-UUAUUAGUGAAC-AGG	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s702_TRINITY_DN8534_c0_g1_385_TPlot.pdf
TRINITY_DN8534_c0_g1:422	si_s833	TRINITY_DN8534_c0_g1	411	431	422	-27.20	-18.80	0.691176470588235	6	1-4,431-428;7-15,425-417;18-21,414-411	5-6,427-426[SIL];16-17,416-415[SIL]	((((..(((((((((..((((&))))..)))))))))..))))	GCUUGCUUCAAAUUGGAUUUC&GAAAAACAAUUUGAAAGAAGC	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s833_TRINITY_DN8534_c0_g1_422_TPlot.pdf
TRINITY_DN8537_c0_g1:1248	si_a112	TRINITY_DN8537_c0_g1	1237	1258	1248	-26.20	-18.90	0.721374045801527	7	2-9,1257-1250;10-18,1248-1240	1-1,1258-1258[UP5];x-x,1249-1249[BULt];19-21,1239-1237[UP3]	...(((((((((.((((((((.&.))))))))-)))))))))...	AACAAACAAGCUCCGUGUUUUU&UAAAAUACG-AGCUUGUUUUAU	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN8537_c0_g1_1248_TPlot.pdf
TRINITY_DN853_c1_g1:3133	si_s435	TRINITY_DN853_c1_g1	3122	3142	3133	-20.90	-17.80	0.851674641148325	7.5	3-20,3140-3123	1-2,3142-3141[UP5];21-21,3122-3122[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CUGUGUAGUGUGUAGUUAUCC&CAAUAAUUACAUAUUAUAUAU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN853_c1_g1_3133_TPlot.pdf
TRINITY_DN853_c1_g1:814	si_a127	TRINITY_DN853_c1_g1	803	824	814	-23.10	-16.10	0.696969696969697	9.5	1-9,824-816;12-19,812-805	10-11,815-813[AILt];20-21,804-803[UP3]	..((((((((...(((((((((&)))))))))-..))))))))..	CCAAUUGCUAGAAGCUAUAAGA&UUUUAUAGC-AAUAGUAAUUAA	3	0.983913062252675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a127_TRINITY_DN853_c1_g1_814_TPlot.pdf
TRINITY_DN8541_c0_g1:474	si_s298	TRINITY_DN8541_c0_g1	463	483	474	-30.80	-20.20	0.655844155844156	10	2-4,482-480;6-16,478-468	1-1,483-483[UP5];5-5,479-479[SIL];17-21,467-463[UP3]	.....(((((((((((.(((.&.))).))))))))))).....	UGUGGUUCGCAGUUCCUGUCA&CGAUUGGAAUUGCGAAAAUUC	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN8541_c0_g1_474_TPlot.pdf
TRINITY_DN8541_c0_g1:476	si_s296	TRINITY_DN8541_c0_g1	465	488	476	-31.60	-21.50	0.680379746835443	13	1-3,488-486;4-6,482-480;8-18,478-468	x-x,485-483[BULt];7-7,479-479[SIL];19-21,467-465[UP3]	...(((((((((((.(((...(((&)))---))).)))))))))))...	UGGUUCGCAGUUCCUGUCAACGAC&GUC---GAUUGGAAUUGCGAAAAU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN8541_c0_g1_476_TPlot.pdf
TRINITY_DN8542_c0_g1:1242	si_a225	TRINITY_DN8542_c0_g1	1231	1254	1242	-27.50	-18.14	0.659636363636364	11	2-5,1253-1250;7-21,1245-1231	1-1,1254-1254[UP5];6-6,1249-1246[AILt]	(((((((((((((((....((((.&.))))---.)))))))))))))))	UUGAUUAUAGGAAUAGGUGGAGUA&AACUC---AUGUUUCUAUAAUCAA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN8542_c0_g1_1242_TPlot.pdf
TRINITY_DN8546_c0_g2:157	si_s796	TRINITY_DN8546_c0_g2	146	166	157	-30.30	-23.80	0.785478547854785	6	1-14,166-153;17-21,150-146	15-16,152-151[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	AGCGACAGUGGAAUGCGAGCU&AGCUCGUAUUUUAUCUUCGUU	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN8546_c0_g2_157_TPlot.pdf
TRINITY_DN8546_c0_g2:3792	si_a401	TRINITY_DN8546_c0_g2	3781	3801	3792	-22.60	-15.10	0.668141592920354	11	4-16,3798-3786	1-3,3801-3799[UP5];17-21,3785-3781[UP3]	.....(((((((((((((...&...))))))))))))).....	UAGACGACGAAACAAUUCAGC&AUAGAAUUGUUUUGUUUAUAU	4	0.999999999352834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN8546_c0_g2_3792_TPlot.pdf
TRINITY_DN8546_c0_g2:3795	si_a398	TRINITY_DN8546_c0_g2	3784	3804	3795	-22.40	-15.10	0.674107142857143	14	7-19,3798-3786	1-6,3804-3799[UP5];20-21,3785-3784[UP3]	..(((((((((((((......&......)))))))))))))..	ACGACGAAACAAUUCAGCGGU&AAUAUAGAAUUGUUUUGUUUA	3	0.999999855462075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN8546_c0_g2_3795_TPlot.pdf
TRINITY_DN8546_c0_g2:5348	si_a326	TRINITY_DN8546_c0_g2	5338	5357	5348	-26.20	-20.60	0.786259541984733	8	2-11,5356-5347;13-21,5346-5338	1-1,5357-5357[UP5];12-12,x-x[BULq]	(((((((((-((((((((((.&.)))))))))).)))))))))	GGCGAGGAA-GAGAAGGUCAG&AUGAUUUUUUUAUUCCUUGUC	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN8546_c0_g2_5348_TPlot.pdf
TRINITY_DN8546_c0_g2:5441	si_a322	TRINITY_DN8546_c0_g2	5430	5449	5441	-27.00	-19.60	0.725925925925926	6	1-7,5449-5443;9-13,5442-5438;15-21,5436-5430	8-8,x-x[BULq];14-14,5437-5437[SIL]	(((((((.(((((-(((((((&))))))).))))).)))))))	GGGAGUACAAGAG-CAUGGAU&AUCCAUGAUUUUUUUAUUCCU	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN8546_c0_g2_5441_TPlot.pdf
TRINITY_DN8546_c0_g2:6005	si_s621	TRINITY_DN8546_c0_g2	5994	6014	6005	-32.50	-22.50	0.692307692307692	7.5	1-9,6014-6006;12-14,6003-6001;16-20,5999-5995	10-11,6005-6004[SIL];15-15,6000-6000[SIL];21-21,5994-5994[UP3]	.(((((.(((..(((((((((&)))))))))..))).))))).	CGCGGAUGGAGGGCUUGGAUU&AAUCCAAGCGAUCUUUUCGUA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s621_TRINITY_DN8546_c0_g2_6005_TPlot.pdf
TRINITY_DN8546_c0_g2:7405	si_a141	TRINITY_DN8546_c0_g2	7394	7414	7405	-23.80	-15.50	0.651260504201681	8.5	1-14,7414-7401	15-21,7400-7394[UP3]	.......((((((((((((((&)))))))))))))).......	CGAUGUCACAACGAUUAGUUG&UAAUUAAUCGUUGUUGUUUUA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN8546_c0_g2_7405_TPlot.pdf
TRINITY_DN8546_c0_g2:8033	si_a630	TRINITY_DN8546_c0_g2	8025	8042	8033	-25.80	-16.90	0.655038759689922	7	1-11,8042-8032;15-21,8031-8025	12-14,x-x[BULq]	(((((((---(((((((((((&)))))))))))...)))))))	UCGAGAA---CGAUAUGAUAC&GUAUUAUGUCGAUUUUUUUGA	2	0.999982918307304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN8546_c0_g2_8033_TPlot.pdf
TRINITY_DN8546_c0_g2:9163	si_s809	TRINITY_DN8546_c0_g2	9152	9171	9163	-28.50	-19.80	0.694736842105263	7.5	1-7,9171-9165;10-18,9163-9155	8-9,9164-9164[AILq];19-21,9154-9152[UP3]	...(((((((((.-(((((((&)))))))..)))))))))...	CAGAAGAAGAGGC-ACGAAGA&UCUUCGUUACCUUUUCUUAAU	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN8546_c0_g2_9163_TPlot.pdf
TRINITY_DN8546_c0_g2:9164	si_s808	TRINITY_DN8546_c0_g2	9153	9172	9164	-28.60	-19.80	0.692307692307692	7.5	2-8,9171-9165;11-19,9163-9155	1-1,9172-9172[UP5];9-10,9164-9164[AILq];20-21,9154-9153[UP3]	..(((((((((.-(((((((.&.)))))))..)))))))))..	AGAAGAAGAGGC-ACGAAGAA&AUCUUCGUUACCUUUUCUUAA	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN8546_c0_g2_9164_TPlot.pdf
TRINITY_DN8546_c0_g2:9633	si_a445	TRINITY_DN8546_c0_g2	9622	9642	9633	-27.30	-17.90	0.655677655677656	9	1-3,9642-9640;5-11,9638-9632;13-20,9630-9623	4-4,9639-9639[SIL];12-12,9631-9631[SIL];21-21,9622-9622[UP3]	.((((((((.(((((((.(((&))).))))))).)))))))).	AAGCAGCAACUGUUUCACGUC&GAUAUGAGAUAAUUGUUGUUA	3	0.99858271326274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN8546_c0_g2_9633_TPlot.pdf
TRINITY_DN8550_c0_g1:3201	si_a406	TRINITY_DN8550_c0_g1	3190	3211	3201	-19.80	-13.00	0.656565656565657	10	2-6,3210-3206;7-18,3204-3193	1-1,3211-3211[UP5];x-x,3205-3205[BULt];19-21,3192-3190[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	GUGAGGUAUGGACAACGACAAA&AUUGUU-UUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8550_c0_g1_3201_TPlot.pdf
TRINITY_DN8550_c0_g1:4053	si_a309	TRINITY_DN8550_c0_g1	4040	4062	4053	-33.60	-24.78	0.7375	11.5	2-12,4061-4051;15-20,4046-4041	1-1,4062-4062[UP5];13-14,4050-4047[AILt];21-21,4040-4040[UP3]	.((((((....(((((((((((.&.)))))))))))--..)))))).	CCGUGGAGCGUGGUCCAAGCGGU&UUCGCUUGGAUU--UAUCCAUGA	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a309_TRINITY_DN8550_c0_g1_4053_TPlot.pdf
TRINITY_DN8550_c0_g1:4055	si_a286	TRINITY_DN8550_c0_g1	4044	4064	4055	-28.30	-21.10	0.745583038869258	10	2-14,4063-4051	1-1,4064-4064[UP5];15-21,4050-4044[UP3]	.......(((((((((((((.&.))))))))))))).......	GGAGCGUGGUCCAAGCGGUCG&AGAUCGCUUGGAUUUAAAAAA	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a286_TRINITY_DN8550_c0_g1_4055_TPlot.pdf
TRINITY_DN8550_c0_g1:4135	si_s72	TRINITY_DN8550_c0_g1	4124	4147	4135	-24.10	-16.30	0.676348547717842	10	1-6,4147-4142;7-15,4138-4130;17-20,4128-4125	x-x,4141-4139[BULt];16-16,4129-4129[SIL];21-21,4124-4124[UP3]	.((((.(((((((((...((((((&))))))---))))))))).)))).	CAGGAUAGAGAGAAAUAUAUAGAA&UUCUAU---UUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8550_c0_g1_4135_TPlot.pdf
TRINITY_DN8550_c0_g1:6156	si_a776	TRINITY_DN8550_c0_g1	6145	6165	6156	-27.10	-18.30	0.675276752767528	11	4-16,6162-6150	1-3,6165-6163[UP5];17-21,6149-6145[UP3]	.....(((((((((((((...&...))))))))))))).....	UCUAAGGAGGAGUUGAAUAAU&UUGAUUCAACUCUUCUAUUUU	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN8550_c0_g1_6156_TPlot.pdf
TRINITY_DN8550_c0_g1:6157	si_a775	TRINITY_DN8550_c0_g1	6146	6166	6157	-27.20	-18.30	0.672794117647059	12	5-17,6162-6150	1-4,6166-6163[UP5];18-21,6149-6146[UP3]	....(((((((((((((....&....)))))))))))))....	CUAAGGAGGAGUUGAAUAAUG&AUUGAUUCAACUCUUCUAUUU	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN8550_c0_g1_6157_TPlot.pdf
TRINITY_DN8550_c0_g1:6234	si_a824	TRINITY_DN8550_c0_g1	6223	6243	6234	-23.60	-16.00	0.677966101694915	10	2-12,6242-6232	1-1,6243-6243[UP5];13-21,6231-6223[UP3]	.........(((((((((((.&.))))))))))).........	UCUGAUGUCCUUUCCUUUCUG&AAGAAAGGAAAGAAAAAAAAU	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN8550_c0_g1_6234_TPlot.pdf
TRINITY_DN8550_c0_g1:8421	si_s300	TRINITY_DN8550_c0_g1	8409	8430	8421	-29.70	-19.70	0.663299663299663	8	3-8,8428-8423;10-15,8421-8416;17-21,8413-8409	1-2,8430-8429[UP5];9-9,8422-8422[SIL];16-16,8415-8414[AILt]	(((((..((((((.((((((..&..)))))).))))))-.)))))	CAGAACAUUUCGCUGUUCCAGA&AUUGGAAUUGCGAAA-AUUCUG	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s300_TRINITY_DN8550_c0_g1_8421_TPlot.pdf
TRINITY_DN8550_c2_g1:2608	si_a142	TRINITY_DN8550_c2_g1	2596	2617	2608	-23.50	-15.60	0.663829787234043	10	5-15,2613-2603;16-20,2601-2597	1-4,2617-2614[UP5];x-x,2602-2602[BULt];21-21,2596-2596[UP3]	.(((((.(((((((((((....&....)))))))))))-))))).	GUGAAAUCGACAACGAUUUGAC&AAUUAAUCGUUGUUG-UUUUAA	4	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN8550_c2_g1_2608_TPlot.pdf
TRINITY_DN8550_c2_g1:2630	si_a436	TRINITY_DN8550_c2_g1	2619	2638	2630	-33.80	-22.80	0.674556213017752	9	1-7,2638-2632;9-16,2631-2624	8-8,x-x[BULq];17-21,2623-2619[UP3]	.....((((((((-(((((((&))))))).)))))))).....	CAGGAUCAUGUCC-ACGGGUC&GAUCCGUUGGAUAUGAGAUAA	4	0.90878296822752	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a436_TRINITY_DN8550_c2_g1_2630_TPlot.pdf
TRINITY_DN8552_c0_g1:1145	si_s71	TRINITY_DN8552_c0_g1	1134	1154	1145	-25.70	-22.50	0.875486381322957	7	1-5,1154-1150;7-21,1148-1134	6-6,1149-1149[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	AGGAGAGGAGAAGAGAAGGAG&CUUCUAUUUUUUUUCUUUCCU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8552_c0_g1_1145_TPlot.pdf
TRINITY_DN8552_c0_g1:2287	si_a139	TRINITY_DN8552_c0_g1	2276	2297	2287	-25.90	-17.80	0.687258687258687	10.5	2-7,2296-2291;9-11,2288-2286;13-21,2284-2276	1-1,2297-2297[UP5];8-8,2290-2289[AILt];12-12,2285-2285[SIL]	(((((((((.(((..((((((.&.))))))-.))).)))))))))	GAGCAACGAGGAUGGGGUUACC&AGUAAUU-AAUCGUUGUUGUUU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN8552_c0_g1_2287_TPlot.pdf
TRINITY_DN8552_c0_g1:517	si_s405	TRINITY_DN8552_c0_g1	506	526	517	-31.90	-24.18	0.757993730407523	5.5	1-11,526-516;15-20,512-507	12-14,515-513[SIL];21-21,506-506[UP3]	.((((((...(((((((((((&)))))))))))...)))))).	UUGUGUCUCGUUUCGUCUUCC&GGAAGACGAAAAACGACAUAU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s405_TRINITY_DN8552_c0_g1_517_TPlot.pdf
TRINITY_DN8552_c0_g1:518	si_s404	TRINITY_DN8552_c0_g1	507	527	518	-32.40	-25.48	0.78641975308642	3.5	1-12,527-516;16-21,512-507	13-15,515-513[SIL]	((((((...((((((((((((&))))))))))))...))))))	UGUGUCUCGUUUCGUCUUCCU&AGGAAGACGAAAAACGACAUA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s404_TRINITY_DN8552_c0_g1_518_TPlot.pdf
TRINITY_DN8553_c0_g1:481	si_a299	TRINITY_DN8553_c0_g1	470	490	481	-28.30	-19.70	0.696113074204947	13	6-18,485-473	1-5,490-486[UP5];19-21,472-470[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUACAAGCGAGUCUUUGAGGA&UUAAAAAAGAUUCGCUUGGAU	2	0.722505268005407	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a299_TRINITY_DN8553_c0_g1_481_TPlot.pdf
TRINITY_DN8554_c0_g1:177	si_a380	TRINITY_DN8554_c0_g1	165	186	177	-24.00	-16.30	0.679166666666667	8	4-15,183-172;16-21,170-165	1-3,186-184[UP5];x-x,171-171[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	AUUCUUCGGUUUGAAAUCAGAA&AAAUGAUUUCGAAUU-AAGAAU	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN8554_c0_g1_177_TPlot.pdf
TRINITY_DN8556_c0_g1:4203	si_a866	TRINITY_DN8556_c0_g1	4191	4212	4203	-23.30	-15.20	0.652360515021459	6.5	3-16,4210-4197;18-21,4194-4191	1-2,4212-4211[UP5];17-17,4196-4195[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	CGGCGGAAGUCUUUAAUAAUAC&CAAUUAUUAAAGAUUU-AGUUG	4	0.96321913142813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a866_TRINITY_DN8556_c0_g1_4203_TPlot.pdf
TRINITY_DN8558_c0_g1:2047	si_s18	TRINITY_DN8558_c0_g1	2036	2056	2047	-27.50	-18.80	0.683636363636364	10.5	4-17,2053-2040;20-20,2037-2037	1-3,2056-2054[UP5];18-19,2039-2038[SIL];21-21,2036-2036[UP3]	.(..((((((((((((((...&...))))))))))))))..).	UGGAGCGAUCAAUGUGGUCCA&AUUACUAUAUUGAUUGCAACU	3	0.908258056496873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN8558_c0_g1_2047_TPlot.pdf
TRINITY_DN8558_c0_g1:2048	si_s17	TRINITY_DN8558_c0_g1	2037	2057	2048	-27.20	-18.80	0.691176470588235	12.5	5-18,2053-2040	1-4,2057-2054[UP5];19-21,2039-2037[UP3]	...((((((((((((((....&....))))))))))))))...	GGAGCGAUCAAUGUGGUCCAA&UAUUACUAUAUUGAUUGCAAC	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s17_TRINITY_DN8558_c0_g1_2048_TPlot.pdf
TRINITY_DN8558_c0_g1:2063	si_a502	TRINITY_DN8558_c0_g1	2051	2073	2063	-32.10	-22.20	0.691588785046729	11	1-9,2073-2065;10-10,2063-2063;12-19,2060-2053	x-x,2064-2064[BULt];11-11,2062-2061[AILt];20-21,2052-2051[UP3]	..((((((((..(.(((((((((&)))))))))-)-.))))))))..	GGUCCAAGGGCUGUACGAGAGAC&GUUUUUCGU-C-UUCCUUGGAAU	4	0.999999198518655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN8558_c0_g1_2063_TPlot.pdf
TRINITY_DN8558_c0_g1:2065	si_a501	TRINITY_DN8558_c0_g1	2052	2074	2065	-33.50	-22.60	0.674626865671642	10.5	2-10,2073-2065;11-11,2063-2063;13-20,2060-2053	1-1,2074-2074[UP5];x-x,2064-2064[BULt];12-12,2062-2061[AILt];21-21,2052-2052[UP3]	.((((((((..(.(((((((((.&.)))))))))-)-.)))))))).	GUCCAAGGGCUGUACGAGAGACU&CGUUUUUCGU-C-UUCCUUGGAA	4	0.9999999868209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN8558_c0_g1_2065_TPlot.pdf
TRINITY_DN8558_c0_g1:2152	si_s89	TRINITY_DN8558_c0_g1	2141	2161	2152	-35.30	-23.00	0.651558073654391	8.5	3-18,2159-2144;20-21,2142-2141	1-2,2161-2160[UP5];19-19,2143-2143[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	CGUGGUGGAGAAGGAGGAGUU&CCUUUCUUCUUCUUCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8558_c0_g1_2152_TPlot.pdf
TRINITY_DN8558_c0_g1:2200	si_s384	TRINITY_DN8558_c0_g1	2188	2209	2200	-38.50	-26.40	0.685714285714286	6.5	2-13,2208-2197;14-17,2195-2192;19-21,2190-2188	1-1,2209-2209[UP5];x-x,2196-2196[BULt];18-18,2191-2191[SIL]	(((.((((.((((((((((((.&.))))))))))))-)))).)))	UUGAGAUGCUGGGGCGGACGCC&CGUGUCCGCCUUA-CAUUCCAA	4	0.887869292529245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN8558_c0_g1_2200_TPlot.pdf
TRINITY_DN8558_c0_g1:2204	si_s380	TRINITY_DN8558_c0_g1	2192	2212	2204	-40.00	-28.10	0.7025	6.5	2-4,2211-2209;6-17,2208-2197;18-21,2195-2192	1-1,2212-2212[UP5];5-5,x-x[BULq];x-x,2196-2196[BULt]	((((.((((((((((((-(((.&.))).))))))))))))-))))	GAUGCUGGGGCGGACGC-CGAA&CUCGCGUGUCCGCCUUA-CAUU	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s380_TRINITY_DN8558_c0_g1_2204_TPlot.pdf
TRINITY_DN8558_c0_g1:2207	si_s635	TRINITY_DN8558_c0_g1	2196	2219	2207	-39.80	-26.94	0.676884422110553	11.5	1-6,2219-2214;8-19,2209-2198	7-7,2213-2210[AILt];20-21,2197-2196[UP3]	..((((((((((((....((((((&))))))---.))))))))))))..	CUGGGGCGGACGCCGAAGACGAAA&UUUCGU---AGGCGUUUGCCCUCG	4	0.993505084268117	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s635_TRINITY_DN8558_c0_g1_2207_TPlot.pdf
TRINITY_DN8558_c0_g1:2208	si_s634	TRINITY_DN8558_c0_g1	2197	2220	2208	-38.30	-27.04	0.706005221932115	11.5	2-7,2219-2214;9-20,2209-2198	1-1,2220-2220[UP5];8-8,2213-2210[AILt];21-21,2197-2197[UP3]	.((((((((((((....((((((.&.))))))---.)))))))))))).	UGGGGCGGACGCCGAAGACGAAAC&UUUUCGU---AGGCGUUUGCCCUC	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s634_TRINITY_DN8558_c0_g1_2208_TPlot.pdf
TRINITY_DN8558_c0_g1:2209	si_s633	TRINITY_DN8558_c0_g1	2198	2221	2209	-37.90	-27.04	0.713456464379947	12.5	3-8,2219-2214;10-21,2209-2198	1-2,2221-2220[UP5];9-9,2213-2210[AILt]	((((((((((((....((((((..&..))))))---.))))))))))))	GGGGCGGACGCCGAAGACGAAACA&CUUUUCGU---AGGCGUUUGCCCU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN8558_c0_g1_2209_TPlot.pdf
TRINITY_DN8558_c0_g1:2210	si_s632	TRINITY_DN8558_c0_g1	2199	2222	2210	-38.20	-25.94	0.679057591623037	14	4-9,2219-2214;11-21,2209-2199	1-3,2222-2220[UP5];10-10,2213-2210[AILt]	(((((((((((....((((((...&...))))))---.)))))))))))	GGGCGGACGCCGAAGACGAAACAC&UCUUUUCGU---AGGCGUUUGCCC	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN8558_c0_g1_2210_TPlot.pdf
TRINITY_DN8558_c0_g1:2306	si_s641	TRINITY_DN8558_c0_g1	2294	2315	2306	-39.20	-26.10	0.665816326530612	9.5	2-12,2314-2304;13-17,2302-2298	1-1,2315-2315[UP5];x-x,2303-2303[BULt];18-21,2297-2294[UP3]	....(((((.(((((((((((.&.)))))))))))-)))))....	GAUAAUCGGCGGGCAGACGUCG&AGGCGUUUGCCC-UCGAUACAA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s641_TRINITY_DN8558_c0_g1_2306_TPlot.pdf
TRINITY_DN8558_c0_g1:2309	si_s638	TRINITY_DN8558_c0_g1	2297	2317	2309	-40.30	-26.20	0.650124069478908	8.5	2-3,2316-2315;5-15,2314-2304;16-20,2302-2298	1-1,2317-2317[UP5];4-4,x-x[BULq];x-x,2303-2303[BULt];21-21,2297-2297[UP3]	.(((((.(((((((((((-((.&.)).)))))))))))-))))).	AAUCGGCGGGCAGACGUC-GCU&CGUAGGCGUUUGCCC-UCGAUA	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN8558_c0_g1_2309_TPlot.pdf
TRINITY_DN8558_c0_g1:2599	si_s218	TRINITY_DN8558_c0_g1	2587	2609	2599	-35.50	-23.20	0.653521126760563	9	1-6,2609-2604;7-8,2602-2601;10-12,2599-2597;13-19,2595-2589	x-x,2603-2603[BULt];9-9,2600-2600[SIL];x-x,2596-2596[BULt];20-21,2588-2587[UP3]	..(((((((.(((.((.((((((&))))))-)).)))-)))))))..	ACUUCACGCUGGUCUCAGAACGC&GUGUUC-GAAACC-GCGUGAAUA	4	0.962451997041849	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN8558_c0_g1_2599_TPlot.pdf
TRINITY_DN8558_c0_g1:2600	si_s217	TRINITY_DN8558_c0_g1	2588	2610	2600	-35.80	-23.40	0.653631284916201	8	2-7,2609-2604;8-9,2602-2601;11-13,2599-2597;14-20,2595-2589	1-1,2610-2610[UP5];x-x,2603-2603[BULt];10-10,2600-2600[SIL];x-x,2596-2596[BULt];21-21,2588-2588[UP3]	.(((((((.(((.((.((((((.&.))))))-)).)))-))))))).	CUUCACGCUGGUCUCAGAACGCU&UGUGUUC-GAAACC-GCGUGAAU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s217_TRINITY_DN8558_c0_g1_2600_TPlot.pdf
TRINITY_DN8558_c0_g1:2601	si_s216	TRINITY_DN8558_c0_g1	2589	2611	2601	-35.80	-23.30	0.650837988826816	9	3-8,2609-2604;9-10,2602-2601;12-14,2599-2597;15-21,2595-2589	1-2,2611-2610[UP5];x-x,2603-2603[BULt];11-11,2600-2600[SIL];x-x,2596-2596[BULt]	(((((((.(((.((.((((((..&..))))))-)).)))-)))))))	UUCACGCUGGUCUCAGAACGCUA&UUGUGUUC-GAAACC-GCGUGAA	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN8558_c0_g1_2601_TPlot.pdf
TRINITY_DN8558_c0_g1:3270	si_a534	TRINITY_DN8558_c0_g1	3257	3279	3270	-39.70	-26.40	0.664987405541562	6.5	1-10,3279-3270;11-15,3268-3264;16-18,3262-3260	x-x,3269-3269[BULt];x-x,3263-3263[BULt];19-21,3259-3257[UP3]	...(((.(((((.((((((((((&))))))))))-)))))-)))...	GCCUGACAUCGAGUCGCUCGCGU&ACGCGAGCGA-UCGGU-UCAAUC	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a534_TRINITY_DN8558_c0_g1_3270_TPlot.pdf
TRINITY_DN8558_c0_g1:3271	si_a533	TRINITY_DN8558_c0_g1	3258	3280	3271	-39.40	-26.40	0.67005076142132	6.5	2-11,3279-3270;12-16,3268-3264;17-19,3262-3260	1-1,3280-3280[UP5];x-x,3269-3269[BULt];x-x,3263-3263[BULt];20-21,3259-3258[UP3]	..(((.(((((.((((((((((.&.))))))))))-)))))-)))..	CCUGACAUCGAGUCGCUCGCGUA&CACGCGAGCGA-UCGGU-UCAAU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a533_TRINITY_DN8558_c0_g1_3271_TPlot.pdf
TRINITY_DN8558_c0_g1:3272	si_a532	TRINITY_DN8558_c0_g1	3259	3281	3272	-40.10	-26.40	0.658354114713217	7.5	3-12,3279-3270;13-17,3268-3264;18-20,3262-3260	1-2,3281-3280[UP5];x-x,3269-3269[BULt];x-x,3263-3263[BULt];21-21,3259-3259[UP3]	.(((.(((((.((((((((((..&..))))))))))-)))))-))).	CUGACAUCGAGUCGCUCGCGUAU&ACACGCGAGCGA-UCGGU-UCAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a532_TRINITY_DN8558_c0_g1_3272_TPlot.pdf
TRINITY_DN8558_c0_g1:3321	si_a642	TRINITY_DN8558_c0_g1	3310	3330	3321	-25.90	-17.76	0.685714285714286	9.5	2-10,3329-3321;15-21,3316-3310	1-1,3330-3330[UP5];11-14,3320-3317[SIL]	(((((((....(((((((((.&.)))))))))....)))))))	CCGAUGUUGAUCUCAAAGGAU&UUUUUUUGAGUAAUAUAUCGG	3	0.979900597378194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN8558_c0_g1_3321_TPlot.pdf
TRINITY_DN8559_c0_g1:1230	si_s87	TRINITY_DN8559_c0_g1	1219	1246	1230	-32.90	-22.70	0.689969604863222	15.5	1-6,1246-1241;7-14,1233-1226;16-21,1224-1219	x-x,1240-1234[BULt];15-15,1225-1225[SIL]	((((((.((((((((.......((((((&))))))-------)))))))).))))))	AGGCGACGAAGAAGAGCUCCAGAAGGAA&UUCCUU-------UCUUCUUCUUCGCUU	3	0.999999999999886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8559_c0_g1_1230_TPlot.pdf
TRINITY_DN8559_c0_g1:1713	si_a863	TRINITY_DN8559_c0_g1	1702	1723	1713	-24.40	-16.30	0.668032786885246	6	1-3,1723-1721;4-17,1719-1706	x-x,1720-1720[BULt];18-21,1705-1702[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	GUUCAUCUUUAAUAAUUGUGAU&AUC-CAAUUAUUAAAGAUUUAG	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a863_TRINITY_DN8559_c0_g1_1713_TPlot.pdf
TRINITY_DN8559_c0_g1:1714	si_a862	TRINITY_DN8559_c0_g1	1703	1724	1714	-22.70	-16.50	0.726872246696035	6	2-4,1723-1721;5-18,1719-1706	1-1,1724-1724[UP5];x-x,1720-1720[BULt];19-21,1705-1703[UP3]	...((((((((((((((.(((.&.)))-))))))))))))))...	UUCAUCUUUAAUAAUUGUGAUA&AAUC-CAAUUAUUAAAGAUUUA	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a862_TRINITY_DN8559_c0_g1_1714_TPlot.pdf
TRINITY_DN8559_c0_g1:1716	si_a860	TRINITY_DN8559_c0_g1	1705	1726	1716	-24.30	-16.50	0.679012345679012	8	4-6,1723-1721;7-20,1719-1706	1-3,1726-1724[UP5];x-x,1720-1720[BULt];21-21,1705-1705[UP3]	.((((((((((((((.(((...&...)))-)))))))))))))).	CAUCUUUAAUAAUUGUGAUAUA&GAAAUC-CAAUUAUUAAAGAUU	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a860_TRINITY_DN8559_c0_g1_1716_TPlot.pdf
TRINITY_DN8559_c0_g1:2136	si_a326	TRINITY_DN8559_c0_g1	2119	2145	2136	-26.20	-18.10	0.690839694656489	19	3-12,2143-2134;13-21,2127-2119	1-2,2145-2144[UP5];x-x,2133-2128[BULt]	(((((((((......((((((((((..&..))))))))))------)))))))))	GGCGAGGAAGACACCUAAGAAGGUCGG&AUGAUUUUUUUA------UUCCUUGUC	3	0.999990831458977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN8559_c0_g1_2136_TPlot.pdf
TRINITY_DN8559_c0_g1:2598	si_a628	TRINITY_DN8559_c0_g1	2587	2607	2598	-27.10	-19.10	0.70479704797048	9	1-5,2607-2603;7-9,2601-2599;11-18,2597-2590	6-6,2602-2602[SIL];10-10,2598-2598[SIL];19-21,2589-2587[UP3]	...((((((((.(((.(((((&))))).))).))))))))...	CGUGGAAUCGAGAUAUUGCGC&GCGUAUUAUGUCGAUUUUUUU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN8559_c0_g1_2598_TPlot.pdf
TRINITY_DN8559_c0_g1:2599	si_a627	TRINITY_DN8559_c0_g1	2588	2608	2599	-29.50	-20.20	0.684745762711864	8.5	1-6,2608-2603;8-10,2601-2599;12-19,2597-2590	7-7,2602-2602[SIL];11-11,2598-2598[SIL];20-21,2589-2588[UP3]	..((((((((.(((.((((((&)))))).))).))))))))..	GUGGAAUCGAGAUAUUGCGCU&GGCGUAUUAUGUCGAUUUUUU	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN8559_c0_g1_2599_TPlot.pdf
TRINITY_DN8559_c0_g1:2600	si_a626	TRINITY_DN8559_c0_g1	2589	2609	2600	-30.20	-20.40	0.675496688741722	9	2-7,2608-2603;9-11,2601-2599;13-20,2597-2590	1-1,2609-2609[UP5];8-8,2602-2602[SIL];12-12,2598-2598[SIL];21-21,2589-2589[UP3]	.((((((((.(((.((((((.&.)))))).))).)))))))).	UGGAAUCGAGAUAUUGCGCUC&AGGCGUAUUAUGUCGAUUUUU	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a626_TRINITY_DN8559_c0_g1_2600_TPlot.pdf
TRINITY_DN8559_c0_g1:2601	si_a625	TRINITY_DN8559_c0_g1	2590	2610	2601	-30.60	-20.40	0.666666666666667	9	3-8,2608-2603;10-12,2601-2599;14-21,2597-2590	1-2,2610-2609[UP5];9-9,2602-2602[SIL];13-13,2598-2598[SIL]	((((((((.(((.((((((..&..)))))).))).))))))))	GGAAUCGAGAUAUUGCGCUCC&UAGGCGUAUUAUGUCGAUUUU	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN8559_c0_g1_2601_TPlot.pdf
TRINITY_DN8559_c0_g1:2741	si_a630	TRINITY_DN8559_c0_g1	2730	2750	2741	-25.80	-17.20	0.666666666666667	10	1-2,2750-2749;4-10,2747-2741;12-20,2739-2731	3-3,2748-2748[SIL];11-11,2740-2740[SIL];21-21,2730-2730[UP3]	.(((((((((.(((((((.((&)).))))))).))))))))).	ACGAAAAAGUGGACGUGGGGC&GUAUUAUGUCGAUUUUUUUGA	3	0.999998905636671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN8559_c0_g1_2741_TPlot.pdf
TRINITY_DN8559_c0_g1:2742	si_a629	TRINITY_DN8559_c0_g1	2731	2751	2742	-26.30	-17.60	0.669201520912548	10	2-3,2750-2749;5-11,2747-2741;13-21,2739-2731	1-1,2751-2751[UP5];4-4,2748-2748[SIL];12-12,2740-2740[SIL]	(((((((((.(((((((.((.&.)).))))))).)))))))))	CGAAAAAGUGGACGUGGGGCU&CGUAUUAUGUCGAUUUUUUUG	3	0.999944438983975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN8559_c0_g1_2742_TPlot.pdf
TRINITY_DN8559_c0_g1:2743	si_a628	TRINITY_DN8559_c0_g1	2732	2755	2743	-27.10	-17.90	0.660516605166052	12	1-5,2755-2751;6-12,2747-2741;14-21,2739-2732	x-x,2750-2748[BULt];13-13,2740-2740[SIL]	((((((((.(((((((...(((((&)))))---))))))).))))))))	GAAAAAGUGGACGUGGGGCUAUGC&GCGUA---UUAUGUCGAUUUUUUU	2	0.999944277087014	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN8559_c0_g1_2743_TPlot.pdf
TRINITY_DN8559_c0_g1:730	si_a409	TRINITY_DN8559_c0_g1	719	739	730	-19.50	-13.40	0.687179487179487	6.5	1-5,739-735;7-10,733-730;12-20,728-720	6-6,734-734[SIL];11-11,729-729[SIL];21-21,719-719[UP3]	.(((((((((.((((.(((((&))))).)))).))))))))).	GUAUUUGAAUUUAAAGAAGAC&GUUUUGUUUAUAUUUAAAUAA	3	0.999999983093593	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN8559_c0_g1_730_TPlot.pdf
TRINITY_DN8560_c0_g1:1515	si_s87	TRINITY_DN8560_c0_g1	1501	1524	1515	-32.90	-22.80	0.693009118541034	13.5	1-6,1524-1519;8-12,1517-1513;13-21,1509-1501	7-7,1518-1518[SIL];x-x,1512-1510[BULt]	(((((((((...(((((.((((((&)))))).)))))---)))))))))	AGGCGAGGACGUGGAGGCGGGGAG&UUCCUUUCUUCU---UCUUCGCUU	2	0.999999981360686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8560_c0_g1_1515_TPlot.pdf
TRINITY_DN8560_c0_g1:1529	si_s67	TRINITY_DN8560_c0_g1	1518	1538	1529	-25.60	-16.64	0.65	12	1-9,1538-1530;15-20,1524-1519	10-14,1529-1525[SIL];21-21,1518-1518[UP3]	.((((((.....(((((((((&))))))))).....)))))).	CGGGGAGUUUUGAGGAGUUGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8560_c0_g1_1529_TPlot.pdf
TRINITY_DN8560_c0_g1:1585	si_a313	TRINITY_DN8560_c0_g1	1574	1594	1585	-28.70	-19.10	0.665505226480836	11	1-3,1594-1592;5-8,1590-1587;11-18,1584-1577	4-4,1591-1591[SIL];9-10,1586-1585[SIL];19-21,1576-1574[UP3]	...((((((((..((((.(((&))).))))..))))))))...	ACCAUCAUGGAGCGAUCGGAG&CUUGGAUUUAUCCAUGAUUUU	3	0.999958151006358	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN8560_c0_g1_1585_TPlot.pdf
TRINITY_DN8560_c0_g1:1593	si_s363	TRINITY_DN8560_c0_g1	1582	1601	1593	-36.20	-24.40	0.674033149171271	10	2-7,1600-1595;11-20,1592-1583	1-1,1601-1601[UP5];8-10,1594-1593[AILq];21-21,1582-1582[UP3]	.((((((((((..-((((((.&.))))))...)))))))))).	GGAGCGAUCGGAG-AGUCUGG&AUAGAUUGAACCGAUCGCUCG	2	0.476490310257441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s363_TRINITY_DN8560_c0_g1_1593_TPlot.pdf
TRINITY_DN8560_c0_g1:1594	si_s362	TRINITY_DN8560_c0_g1	1583	1602	1594	-34.70	-23.80	0.685878962536023	11	3-8,1600-1595;12-21,1592-1583	1-2,1602-1601[UP5];9-11,1594-1593[AILq]	((((((((((..-((((((..&..))))))...))))))))))	GAGCGAUCGGAG-AGUCUGGA&AAUAGAUUGAACCGAUCGCUC	3	0.581252022455652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN8560_c0_g1_1594_TPlot.pdf
TRINITY_DN8560_c0_g1:1649	si_s768	TRINITY_DN8560_c0_g1	1637	1658	1649	-26.80	-17.90	0.667910447761194	7	2-7,1657-1652;9-17,1650-1642;18-20,1640-1638	1-1,1658-1658[UP5];8-8,1651-1651[SIL];x-x,1641-1641[BULt];21-21,1637-1637[UP3]	.(((.(((((((((.((((((.&.)))))).)))))))))-))).	AAGCGGAUGGUGAUGAAUCGUC&AACGAUUAAUUACUAUU-GCUA	2	0.894890534019582	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN8560_c0_g1_1649_TPlot.pdf
TRINITY_DN8560_c0_g1:1798	si_a147	TRINITY_DN8560_c0_g1	1786	1809	1798	-30.40	-19.80	0.651315789473684	12.5	2-9,1808-1801;10-14,1798-1794;16-20,1791-1787	1-1,1809-1809[UP5];x-x,1800-1799[BULt];15-15,1793-1792[AILt];21-21,1786-1786[UP3]	.(((((..(((((..((((((((.&.))))))))--)))))-.))))).	GGACCUCGGAGACUGGACGGCGAA&AUCGUUGUU--GUUUU-AAGGUCA	4	0.999999996828168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN8560_c0_g1_1798_TPlot.pdf
TRINITY_DN8560_c0_g1:1935	si_s650	TRINITY_DN8560_c0_g1	1923	1944	1935	-41.50	-27.66	0.666506024096386	11	1-8,1944-1937;13-18,1932-1927;19-20,1925-1924	9-12,1936-1933[SIL];x-x,1926-1926[BULt];21-21,1923-1923[UP3]	.((.((((((....((((((((&))))))))....))))))-)).	UUCUCCCCGACAAAGUCGAGGG&CCCUCGAUACAAUCGGGG-GAU	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s650_TRINITY_DN8560_c0_g1_1935_TPlot.pdf
TRINITY_DN8560_c0_g1:1938	si_s647	TRINITY_DN8560_c0_g1	1927	1947	1938	-41.20	-27.16	0.659223300970874	8	1-2,1947-1946;4-11,1944-1937;16-21,1932-1927	3-3,1945-1945[SIL];12-15,1936-1933[SIL]	((((((....((((((((.((&)).))))))))....))))))	CCCCGACAAAGUCGAGGGGAA&UUGCCCUCGAUACAAUCGGGG	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s647_TRINITY_DN8560_c0_g1_1938_TPlot.pdf
TRINITY_DN8561_c0_g1:2028	si_a409	TRINITY_DN8561_c0_g1	2017	2037	2028	-19.50	-13.30	0.682051282051282	8	1-15,2037-2023	16-21,2022-2017[UP3]	......(((((((((((((((&)))))))))))))))......	UUGACAAGAUGUAAACAAAAU&GUUUUGUUUAUAUUUAAAUAA	3	0.99999999944762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN8561_c0_g1_2028_TPlot.pdf
TRINITY_DN8564_c0_g1:1323	si_s524	TRINITY_DN8564_c0_g1	1313	1332	1323	-23.90	-17.00	0.711297071129707	7	1-11,1332-1322;13-20,1321-1314	12-12,x-x[BULq];21-21,1313-1313[UP3]	.((((((((-(((((((((((&))))))))))).)))))))).	GCAAAAGUG-UUUCGGGUUGG&UUAAUUCGAAAUCAUUUUUGA	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN8564_c0_g1_1323_TPlot.pdf
TRINITY_DN8566_c0_g1:616	si_s571	TRINITY_DN8566_c0_g1	605	625	616	-29.60	-20.60	0.695945945945946	8	1-15,625-611	16-21,610-605[UP3]	......(((((((((((((((&)))))))))))))))......	AGGGCAUUAUUCUUUGUCCUG&CGGGACAAGGAAUAAAAAAAU	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s571_TRINITY_DN8566_c0_g1_616_TPlot.pdf
TRINITY_DN8567_c0_g1:2128	si_a771	TRINITY_DN8567_c0_g1	2115	2137	2128	-29.40	-19.50	0.663265306122449	9.5	1-4,2137-2134;7-13,2131-2125;14-21,2122-2115	5-6,2133-2132[SIL];x-x,2124-2123[BULt]	((((((((..(((((((..((((&))))..)))))))--))))))))	GGAAGAGUAAUGAGUUAUGCAGA&UUUGAUUGAUUCA--ACUCUUCU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN8567_c0_g1_2128_TPlot.pdf
TRINITY_DN8567_c0_g1:2904	si_a70	TRINITY_DN8567_c0_g1	2893	2914	2904	-23.90	-15.60	0.652719665271967	8.5	1-8,2914-2907;9-19,2905-2895	x-x,2906-2906[BULt];20-21,2894-2893[UP3]	..(((((((((((.((((((((&))))))))-)))))))))))..	UUUGGGAGAUGAUAUUGGAAGA&UCUUUCAA-AUUGUUUUUCAUU	4	0.999999999999855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8567_c0_g1_2904_TPlot.pdf
TRINITY_DN8567_c0_g1:4030	si_s397	TRINITY_DN8567_c0_g1	4015	4039	4030	-32.10	-20.90	0.651090342679128	12	1-12,4039-4028;13-20,4023-4016	x-x,4027-4024[BULt];21-21,4015-4015[UP3]	.((((((((....((((((((((((&))))))))))))----)))))))).	AUUUUCGUCCUACUUUUUUGGGAUG&CAUUCCAAGGAA----GACGAAAAA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s397_TRINITY_DN8567_c0_g1_4030_TPlot.pdf
TRINITY_DN8567_c0_g2:1148	si_s89	TRINITY_DN8567_c0_g2	1138	1157	1148	-35.30	-24.50	0.694050991501416	6.5	2-12,1156-1146;15-20,1144-1139	1-1,1157-1157[UP5];13-14,1145-1145[AILq];21-21,1138-1138[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	AGGAGCGU-GAAGAGGAAGGA&CCUUUCUUCUUCUUCGCUUCG	3	0.999999984089789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8567_c0_g2_1148_TPlot.pdf
TRINITY_DN8567_c0_g2:536	si_a763	TRINITY_DN8567_c0_g2	524	545	536	-28.80	-19.10	0.663194444444445	5.5	1-13,545-533;15-18,531-528;19-20,526-525	14-14,532-532[SIL];x-x,527-527[BULt];21-21,524-524[UP3]	.((.((((.(((((((((((((&))))))))))))).))))-)).	CGAUGUCAUUCAAAAACUCGAA&UUUGGGUUUUUGAUUGAU-UCA	2	0.999996395299518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN8567_c0_g2_536_TPlot.pdf
TRINITY_DN8567_c0_g2:537	si_a762	TRINITY_DN8567_c0_g2	525	546	537	-29.70	-21.60	0.727272727272727	4.5	1-14,546-533;16-19,531-528;20-21,526-525	15-15,532-532[SIL];x-x,527-527[BULt]	((.((((.((((((((((((((&)))))))))))))).))))-))	GAUGUCAUUCAAAAACUCGAAG&CUUUGGGUUUUUGAUUGAU-UC	2	0.873316155068642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN8567_c0_g2_537_TPlot.pdf
TRINITY_DN8567_c0_g3:3001	si_a667	TRINITY_DN8567_c0_g3	2990	3009	3001	-32.10	-21.30	0.663551401869159	8	2-8,3008-3002;11-20,3000-2991	1-1,3009-3009[UP5];9-10,3001-3001[AILq];21-21,2990-2990[UP3]	.((((((((((.-(((((((.&.)))))))..)))))))))).	CGAAUAAGGAAA-AGUAGGUU&UGCCUAUUGAUUCCUUAUUCA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN8567_c0_g3_3001_TPlot.pdf
TRINITY_DN8567_c0_g3:3388	si_s790	TRINITY_DN8567_c0_g3	3377	3397	3388	-27.80	-18.20	0.654676258992806	10.5	4-14,3394-3384;16-18,3382-3380	1-3,3397-3395[UP5];15-15,3383-3383[SIL];19-21,3379-3377[UP3]	...(((.(((((((((((...&...))))))))))).)))...	AAAGAAUUACGGGCUUGUGAA&AAAACAAGCUCGUAUUUUAUC	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s790_TRINITY_DN8567_c0_g3_3388_TPlot.pdf
TRINITY_DN8567_c0_g3:3390	si_s788	TRINITY_DN8567_c0_g3	3379	3399	3390	-26.20	-18.20	0.694656488549618	12.5	6-16,3394-3384;18-20,3382-3380	1-5,3399-3395[UP5];17-17,3383-3383[SIL];21-21,3379-3379[UP3]	.(((.(((((((((((.....&.....))))))))))).))).	AGAAUUACGGGCUUGUGAAAU&AUAAAACAAGCUCGUAUUUUA	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN8567_c0_g3_3390_TPlot.pdf
TRINITY_DN8567_c0_g3:3391	si_s787	TRINITY_DN8567_c0_g3	3380	3400	3391	-26.20	-17.70	0.675572519083969	13	7-17,3394-3384;19-21,3382-3380	1-6,3400-3395[UP5];18-18,3383-3383[SIL]	(((.(((((((((((......&......))))))))))).)))	GAAUUACGGGCUUGUGAAAUA&UAUAAAACAAGCUCGUAUUUU	4	0.945555455267474	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s787_TRINITY_DN8567_c0_g3_3391_TPlot.pdf
TRINITY_DN8567_c0_g4:1173	si_s80	TRINITY_DN8567_c0_g4	1162	1182	1173	-28.20	-19.20	0.680851063829787	10.5	3-6,1180-1177;9-18,1174-1165	1-2,1182-1181[UP5];7-8,1176-1175[SIL];19-21,1164-1162[UP3]	...((((((((((..((((..&..))))..))))))))))...	AGCGAAGAGAGGAUUGAAAUU&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8567_c0_g4_1173_TPlot.pdf
TRINITY_DN8568_c0_g1:769	si_a410	TRINITY_DN8568_c0_g1	758	778	769	-17.80	-11.80	0.662921348314607	10.5	1-14,778-765	15-21,764-758[UP3]	.......((((((((((((((&)))))))))))))).......	GAAUAUGGAAUAUGGACGAAA&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8568_c0_g1_769_TPlot.pdf
TRINITY_DN8569_c0_g1:573	si_s684	TRINITY_DN8569_c0_g1	560	582	573	-28.30	-20.20	0.713780918727915	10	5-16,578-567;17-21,564-560	1-4,582-579[UP5];x-x,566-565[BULt]	(((((..((((((((((((....&....))))))))))))--)))))	GACUAAAGUUGAACUCAUGGGAG&GAAACAUGAGUUUAAU--UAGUC	2	0.170300948496075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s684_TRINITY_DN8569_c0_g1_573_TPlot.pdf
TRINITY_DN8570_c0_g1:1090	si_s803	TRINITY_DN8570_c0_g1	1081	1099	1090	-26.00	-18.30	0.703846153846154	5.5	1-12,1099-1088;15-19,1087-1083	13-14,x-x[BULq];20-21,1082-1081[UP3]	..(((((--((((((((((((&))))))))))))..)))))..	CUGAGGU--CGAAGAUAGAAU&AUUUUAUCUUCGUUACCUUUU	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8570_c0_g1_1090_TPlot.pdf
TRINITY_DN8570_c0_g1:1091	si_s802	TRINITY_DN8570_c0_g1	1082	1100	1091	-26.40	-18.80	0.712121212121212	5	1-13,1100-1088;16-20,1087-1083	14-15,x-x[BULq];21-21,1082-1082[UP3]	.(((((--(((((((((((((&)))))))))))))..))))).	UGAGGU--CGAAGAUAGAAUG&UAUUUUAUCUUCGUUACCUUU	4	0.999700215627082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8570_c0_g1_1091_TPlot.pdf
TRINITY_DN8570_c0_g1:1092	si_s801	TRINITY_DN8570_c0_g1	1083	1101	1092	-28.20	-19.30	0.684397163120567	5.5	2-14,1100-1088;17-21,1087-1083	1-1,1101-1101[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	GAGGU--CGAAGAUAGAAUGA&GUAUUUUAUCUUCGUUACCUU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN8570_c0_g1_1092_TPlot.pdf
TRINITY_DN8571_c0_g2:1536	si_s298	TRINITY_DN8571_c0_g2	1526	1545	1536	-30.80	-21.60	0.701298701298701	2.5	2-12,1544-1534;14-21,1533-1526	1-1,1545-1545[UP5];13-13,x-x[BULq]	((((((((-(((((((((((.&.))))))))))).))))))))	GAAUUUUU-CAAUUCCAAUCU&CGAUUGGAAUUGCGAAAAUUC	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s298_TRINITY_DN8571_c0_g2_1536_TPlot.pdf
TRINITY_DN8571_c0_g2:1792	si_s92	TRINITY_DN8571_c0_g2	1780	1801	1792	-34.90	-27.10	0.776504297994269	5	1-12,1801-1790;13-18,1788-1783	x-x,1789-1789[BULt];19-21,1782-1780[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UGACGAAGCAGAAGAAGAAGAA&UUCUUCUUCUUC-GCUUCGGAU	2	0.630532281077146	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN8571_c0_g2_1792_TPlot.pdf
TRINITY_DN8571_c0_g2:1801	si_s83	TRINITY_DN8571_c0_g2	1790	1810	1801	-30.90	-21.80	0.705501618122977	6	1-6,1810-1805;9-21,1802-1790	7-8,1804-1803[SIL]	(((((((((((((..((((((&))))))..)))))))))))))	GAAGAAGAAGAAGAAGAAGAA&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8571_c0_g2_1801_TPlot.pdf
TRINITY_DN8571_c0_g2:1807	si_s86	TRINITY_DN8571_c0_g2	1796	1818	1807	-32.90	-23.00	0.699088145896657	8	1-6,1818-1813;7-18,1810-1799	x-x,1812-1811[BULt];19-21,1798-1796[UP3]	...((((((((((((..((((((&))))))--))))))))))))...	GAAGAAGAAGAAGAAGUAGGAGA&UUUCCU--UUCUUCUUCUUCGCU	4	0.999999999981032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN8571_c0_g2_1807_TPlot.pdf
TRINITY_DN8571_c0_g2:1808	si_s85	TRINITY_DN8571_c0_g2	1797	1819	1808	-33.80	-23.20	0.686390532544379	8	2-7,1818-1813;8-19,1810-1799	1-1,1819-1819[UP5];x-x,1812-1811[BULt];20-21,1798-1797[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	AAGAAGAAGAAGAAGUAGGAGAA&CUUUCCU--UUCUUCUUCUUCGC	4	0.999999999964765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8571_c0_g2_1808_TPlot.pdf
TRINITY_DN8571_c3_g1:1108	si_s199	TRINITY_DN8571_c3_g1	1092	1117	1108	-31.20	-21.30	0.682692307692308	8.5	1-14,1117-1104;15-19,1098-1094;21-21,1092-1092	x-x,1103-1099[BULt];20-20,1093-1093[SIL]	(.(((((.....((((((((((((((&))))))))))))))-----))))).)	GGAACUGAAGGAGUACAUUCCAGGAU&AUUUUGGAAUGUAC-----CAGUUGU	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN8571_c3_g1_1108_TPlot.pdf
TRINITY_DN8571_c3_g1:1110	si_s197	TRINITY_DN8571_c3_g1	1094	1119	1110	-29.20	-23.00	0.787671232876712	7	1-16,1119-1104;17-21,1098-1094	x-x,1103-1099[BULt]	(((((.....((((((((((((((((&))))))))))))))))-----)))))	AACUGAAGGAGUACAUUCCAGGAUAA&UUAUUUUGGAAUGUAC-----CAGUU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN8571_c3_g1_1110_TPlot.pdf
TRINITY_DN8571_c3_g1:1395	si_s199	TRINITY_DN8571_c3_g1	1385	1405	1395	-31.20	-21.10	0.676282051282051	6	1-4,1405-1402;5-12,1400-1393;14-21,1392-1385	x-x,1401-1401[BULt];13-13,x-x[BULq]	((((((((-((((((((.((((&))))-)))))))).))))))))	GCAAUUGG-ACGUUCCGCAAAU&AUUU-UGGAAUGUACCAGUUGU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN8571_c3_g1_1395_TPlot.pdf
TRINITY_DN8571_c3_g1:1925	si_a149	TRINITY_DN8571_c3_g1	1914	1934	1925	-29.40	-19.30	0.656462585034014	7.5	2-14,1933-1921;16-18,1919-1917	1-1,1934-1934[UP5];15-15,1920-1920[SIL];19-21,1916-1914[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	AAAGGCAUUGAAACAGCAACA&CGUUGUUGUUUUAAGGUCAAU	4	0.999999986546025	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN8571_c3_g1_1925_TPlot.pdf
TRINITY_DN8571_c3_g1:2183	si_a760	TRINITY_DN8571_c3_g1	2170	2192	2183	-31.10	-21.50	0.691318327974277	6.5	2-4,2191-2189;6-16,2187-2177;17-20,2174-2171	1-1,2192-2192[UP5];5-5,2188-2188[SIL];x-x,2176-2175[BULt];21-21,2170-2170[UP3]	.((((..(((((((((((.(((.&.))).)))))))))))--)))).	CUCAAAUUCAGAAACCCAUAGGU&UCCUUUGGGUUUUUGA--UUGAU	2	0.992202858172372	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN8571_c3_g1_2183_TPlot.pdf
TRINITY_DN8571_c3_g1:2184	si_a759	TRINITY_DN8571_c3_g1	2171	2193	2184	-32.60	-21.50	0.659509202453988	6.5	1-1,2193-2193;3-5,2191-2189;7-17,2187-2177;18-21,2174-2171	2-2,2192-2192[SIL];6-6,2188-2188[SIL];x-x,2176-2175[BULt]	((((..(((((((((((.(((.(&).))).)))))))))))--))))	UCAAAUUCAGAAACCCAUAGGUG&CUCCUUUGGGUUUUUGA--UUGA	4	0.999999926891251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN8571_c3_g1_2184_TPlot.pdf
TRINITY_DN8572_c0_g1:348	si_s808	TRINITY_DN8572_c0_g1	337	356	348	-28.60	-18.70	0.653846153846154	8.5	1-5,356-352;7-17,351-341	6-6,x-x[BULq];18-21,340-337[UP3]	....(((((((((((-(((((&))))).)))))))))))....	ACCCGGAAAGGUAGC-AGGAU&AUCUUCGUUACCUUUUCUUAA	4	0.999999999999529	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN8572_c0_g1_348_TPlot.pdf
TRINITY_DN8572_c0_g1:350	si_s806	TRINITY_DN8572_c0_g1	339	358	350	-28.60	-20.40	0.713286713286713	7	1-7,358-352;9-19,351-341	8-8,x-x[BULq];20-21,340-339[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	CCGGAAAGGUAGC-AGGAUAG&UUAUCUUCGUUACCUUUUCUU	3	0.999823841900373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN8572_c0_g1_350_TPlot.pdf
TRINITY_DN8572_c0_g1:353	si_s802	TRINITY_DN8572_c0_g1	343	362	353	-26.40	-18.40	0.696969696969697	8.5	3-11,360-352;13-21,351-343	1-2,362-361[UP5];12-12,x-x[BULq]	(((((((((-(((((((((..&..))))))))).)))))))))	AAAGGUAGC-AGGAUAGGAAA&UAUUUUAUCUUCGUUACCUUU	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8572_c0_g1_353_TPlot.pdf
TRINITY_DN8572_c0_g1:714	si_a635	TRINITY_DN8572_c0_g1	703	723	714	-26.10	-18.00	0.689655172413793	7.5	1-15,723-709	16-21,708-703[UP3]	......(((((((((((((((&)))))))))))))))......	AGAAAACAGAAAAAUCGGCAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN8572_c0_g1_714_TPlot.pdf
TRINITY_DN8572_c0_g1:715	si_a634	TRINITY_DN8572_c0_g1	704	724	715	-26.40	-18.80	0.712121212121212	7	1-16,724-709	17-21,708-704[UP3]	.....((((((((((((((((&)))))))))))))))).....	GAAAACAGAAAAAUCGGCAUG&UAUGUCGAUUUUUUUGAGUAA	3	0.99861111615643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN8572_c0_g1_715_TPlot.pdf
TRINITY_DN8572_c0_g1:716	si_a633	TRINITY_DN8572_c0_g1	705	725	716	-26.40	-19.30	0.731060606060606	7	1-17,725-709	18-21,708-705[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAAACAGAAAAAUCGGCAUGG&UUAUGUCGAUUUUUUUGAGUA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN8572_c0_g1_716_TPlot.pdf
TRINITY_DN8572_c0_g1:717	si_a632	TRINITY_DN8572_c0_g1	706	726	717	-26.10	-19.30	0.739463601532567	7.5	2-18,725-709	1-1,726-726[UP5];19-21,708-706[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	AAACAGAAAAAUCGGCAUGGC&AUUAUGUCGAUUUUUUUGAGU	4	0.952880537012204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN8572_c0_g1_717_TPlot.pdf
TRINITY_DN8572_c0_g1:720	si_a629	TRINITY_DN8572_c0_g1	709	729	720	-26.30	-19.30	0.73384030418251	10.5	5-21,725-709	1-4,729-726[UP5]	(((((((((((((((((....&....)))))))))))))))))	CAGAAAAAUCGGCAUGGCAAU&CGUAUUAUGUCGAUUUUUUUG	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN8572_c0_g1_720_TPlot.pdf
TRINITY_DN8574_c0_g1:1221	si_s550	TRINITY_DN8574_c0_g1	1212	1230	1221	-20.30	-13.20	0.650246305418719	5.5	1-12,1230-1219;15-19,1218-1214	13-14,x-x[BULq];20-21,1213-1212[UP3]	..(((((--((((((((((((&))))))))))))..)))))..	UUAAUGU--GUUCUAUUUUGA&UCAAAAUAGAAUUAAUAUUUU	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s550_TRINITY_DN8574_c0_g1_1221_TPlot.pdf
TRINITY_DN8574_c0_g1:663	si_a21	TRINITY_DN8574_c0_g1	652	672	663	-24.30	-18.90	0.777777777777778	5.5	2-18,671-655	1-1,672-672[UP5];19-21,654-652[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	CAUGGACUAAAAAUAGAUAGU&CCUAUUUAUUUUUAGUUCUAA	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN8574_c0_g1_663_TPlot.pdf
TRINITY_DN8575_c0_g1:2430	si_a418	TRINITY_DN8575_c0_g1	2419	2439	2430	-21.20	-15.50	0.731132075471698	4	1-9,2439-2431;11-21,2429-2419	10-10,2430-2430[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AUUCUGUAUUUCUUUGAAUAU&AUAUUUAAAUAAAUAUAGGAU	3	0.678145667516355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a418_TRINITY_DN8575_c0_g1_2430_TPlot.pdf
TRINITY_DN8575_c0_g1:2433	si_a415	TRINITY_DN8575_c0_g1	2422	2442	2433	-18.10	-13.30	0.734806629834254	5.5	2-12,2441-2431;14-21,2429-2422	1-1,2442-2442[UP5];13-13,2430-2430[SIL]	((((((((.(((((((((((.&.))))))))))).))))))))	CUGUAUUUCUUUGAAUAUGGU&UUUAUAUUUAAAUAAAUAUAG	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN8575_c0_g1_2433_TPlot.pdf
TRINITY_DN8576_c0_g1:399	si_s717	TRINITY_DN8576_c0_g1	388	410	399	-30.10	-19.68	0.653820598006644	12	1-8,410-403;11-19,398-390	9-10,402-399[AILt];20-21,389-388[UP3]	..(((((((((....((((((((&))))))))--..)))))))))..	GCGAUGAUGUCGUUCUCCUUGUU&AACAGGGA--AAGAUAUUAUCUA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s717_TRINITY_DN8576_c0_g1_399_TPlot.pdf
TRINITY_DN8576_c0_g1:436	si_a77	TRINITY_DN8576_c0_g1	425	445	436	-22.20	-15.40	0.693693693693694	8.5	4-17,442-429;19-20,427-426	1-3,445-443[UP5];18-18,428-428[SIL];21-21,425-425[UP3]	.((.((((((((((((((...&...)))))))))))))).)).	CCUGAGUGGUGAAAAACAGAU&AAUUGUUUUUCAUUAUUAAGA	4	0.999835249032249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN8576_c0_g1_436_TPlot.pdf
TRINITY_DN8576_c0_g3:1148	si_s83	TRINITY_DN8576_c0_g3	1132	1160	1148	-30.90	-20.80	0.673139158576052	13	1-9,1160-1152;10-16,1148-1142;17-21,1136-1132	x-x,1151-1149[BULt];x-x,1141-1137[BULt]	(((((.....(((((((...(((((((((&)))))))))---)))))))-----)))))	GAAGAACUUGAGAAGGAUCUAGGAAGGAA&UUCUUUCCU---UUCUUCU-----UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8576_c0_g3_1148_TPlot.pdf
TRINITY_DN8576_c0_g3:1236	si_a405	TRINITY_DN8576_c0_g3	1225	1245	1236	-19.80	-14.10	0.712121212121212	9	2-15,1244-1231	1-1,1245-1245[UP5];16-21,1230-1225[UP3]	......((((((((((((((.&.))))))))))))))......	AAAUACAUAAACGAGACAAUG&AAUUGUUUUGUUUAUAUUUAA	4	0.999999999883337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8576_c0_g3_1236_TPlot.pdf
TRINITY_DN8576_c0_g3:1261	si_s88	TRINITY_DN8576_c0_g3	1245	1271	1261	-34.80	-23.30	0.669540229885058	11	1-2,1271-1270;3-11,1268-1260;12-17,1255-1250;18-21,1248-1245	x-x,1269-1269[BULt];x-x,1259-1256[BULt];x-x,1249-1249[BULt]	((((.((((((....(((((((((.((&))-)))))))))----))))))-))))	GAAGACGAAGACAAUAGAAGAAAGAGA&UC-CUUUCUUCU----UCUUCG-CUUC	2	0.999999997423749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN8576_c0_g3_1261_TPlot.pdf
TRINITY_DN8576_c0_g3:801	si_s75	TRINITY_DN8576_c0_g3	789	810	801	-24.00	-16.00	0.666666666666667	7	2-8,809-803;10-19,801-792;20-21,790-789	1-1,810-810[UP5];9-9,802-802[SIL];x-x,791-791[BULt]	((.((((((((((.(((((((.&.))))))).))))))))))-))	GGCAGAGGAAAGACAAAGGAUU&UAUUUUUUUUCUUUCCUUU-CU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8576_c0_g3_801_TPlot.pdf
TRINITY_DN8576_c0_g3:831	si_s83	TRINITY_DN8576_c0_g3	820	840	831	-30.90	-20.40	0.660194174757282	11	5-19,836-822	1-4,840-837[UP5];20-21,821-820[UP3]	..(((((((((((((((....&....)))))))))))))))..	GCAGAAGGGGAAAGGAGCCAU&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8576_c0_g3_831_TPlot.pdf
TRINITY_DN8578_c0_g1:323	si_s40	TRINITY_DN8578_c0_g1	312	333	323	-24.30	-16.10	0.662551440329218	6.5	2-9,332-325;10-20,323-313	1-1,333-333[UP5];x-x,324-324[BULt];21-21,312-312[UP3]	.(((((((((((.((((((((.&.))))))))-))))))))))).	AGAGUUCAAUUAUUUGAAGAUG&AAUCUUUAA-UAAUUGGAUUUC	4	0.999497737729212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN8578_c0_g1_323_TPlot.pdf
TRINITY_DN8578_c0_g1:516	si_a405	TRINITY_DN8578_c0_g1	505	525	516	-19.80	-15.20	0.767676767676768	7	2-18,524-508	1-1,525-525[UP5];19-21,507-505[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACCAAUAUAAACGAGAUAAUA&AAUUGUUUUGUUUAUAUUUAA	4	0.999175696282049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8578_c0_g1_516_TPlot.pdf
TRINITY_DN8578_c0_g1:614	si_s74	TRINITY_DN8578_c0_g1	603	623	614	-25.00	-16.60	0.664	8.5	1-2,623-622;4-17,620-607	3-3,621-621[SIL];18-21,606-603[UP3]	....((((((((((((((.((&)).))))))))))))))....	CAACGGGAAGAAGAAAGAAAG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8578_c0_g1_614_TPlot.pdf
TRINITY_DN8578_c0_g1:615	si_s73	TRINITY_DN8578_c0_g1	604	624	615	-24.00	-18.20	0.758333333333333	7.5	1-3,624-622;5-18,620-607	4-4,621-621[SIL];19-21,606-604[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AACGGGAAGAAGAAAGAAAGA&UCUAUUUUUUUUCUUUCCUUU	4	0.999999861362699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8578_c0_g1_615_TPlot.pdf
TRINITY_DN8578_c0_g1:620	si_s68	TRINITY_DN8578_c0_g1	609	629	620	-23.10	-16.50	0.714285714285714	9	4-8,626-622;10-21,620-609	1-3,629-627[UP5];9-9,621-621[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GAAGAAGAAAGAAAGAAGGAA&CAACUUCUAUUUUUUUUCUUU	2	0.999978361284052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8578_c0_g1_620_TPlot.pdf
TRINITY_DN8579_c0_g1:1314	si_s481	TRINITY_DN8579_c0_g1	1303	1323	1314	-23.00	-16.00	0.695652173913043	10.5	1-9,1323-1315;11-16,1313-1308	10-10,1314-1314[SIL];17-21,1307-1303[UP3]	.....((((((.(((((((((&))))))))).)))))).....	UUGCAGGGUGAUUAUGGGAUC&GAUCCUAUAUUUAUUUAAAUA	4	0.984543977163586	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN8579_c0_g1_1314_TPlot.pdf
TRINITY_DN8579_c0_g1:1627	si_s75	TRINITY_DN8579_c0_g1	1614	1636	1627	-24.00	-17.10	0.7125	7	3-14,1634-1623;15-21,1620-1614	1-2,1636-1635[UP5];x-x,1622-1621[BULt]	(((((((..((((((((((((..&..))))))))))))--)))))))	GGAAAGGUAGAAGAAAAAAAGCC&UAUUUUUUUUCUUU--CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8579_c0_g1_1627_TPlot.pdf
TRINITY_DN8579_c0_g1:2315	si_a899	TRINITY_DN8579_c0_g1	2304	2324	2315	-18.70	-13.10	0.700534759358289	6	1-6,2324-2319;9-20,2316-2305	7-8,2318-2317[SIL];21-21,2304-2304[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	CUUUUAUAUUAUUGUUUAUUA&UAAUAAUAAGUAAUAUAAAAA	4	0.978046669516093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN8579_c0_g1_2315_TPlot.pdf
TRINITY_DN8579_c0_g1:2316	si_a898	TRINITY_DN8579_c0_g1	2305	2325	2316	-20.50	-14.10	0.68780487804878	5.5	1-7,2325-2319;10-21,2316-2305	8-9,2318-2317[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	UUUUAUAUUAUUGUUUAUUAU&GUAAUAAUAAGUAAUAUAAAA	2	0.889525255798103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN8579_c0_g1_2316_TPlot.pdf
TRINITY_DN857_c0_g1:1663	si_s487	TRINITY_DN857_c0_g1	1652	1680	1663	-18.40	-12.00	0.652173913043478	18	1-8,1680-1673;9-20,1664-1653	x-x,1672-1665[BULt];21-21,1652-1652[UP3]	.((((((((((((........((((((((&))))))))--------)))))))))))).	AGUUUAUAUUUAAACCACUUUGUAAAUAU&AUAUUUAU--------UUAAAUAUAAACA	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN857_c0_g1_1663_TPlot.pdf
TRINITY_DN8581_c0_g1:1073	si_a21	TRINITY_DN8581_c0_g1	1061	1082	1073	-24.30	-15.90	0.654320987654321	8	1-3,1082-1080;5-15,1078-1068;16-19,1066-1063	4-4,1079-1079[SIL];x-x,1067-1067[BULt];20-21,1062-1061[UP3]	..((((.(((((((((((.(((&))).)))))))))))-))))..	GAAGAGUCUGAAGAUGAAGAGG&CCUAUUUAUUUUUAG-UUCUAA	3	0.999999990600837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN8581_c0_g1_1073_TPlot.pdf
TRINITY_DN8581_c0_g1:1075	si_a19	TRINITY_DN8581_c0_g1	1063	1084	1075	-27.00	-18.30	0.677777777777778	7	1-5,1084-1080;7-17,1078-1068;18-21,1066-1063	6-6,1079-1079[SIL];x-x,1067-1067[BULt]	((((.(((((((((((.(((((&))))).)))))))))))-))))	AGAGUCUGAAGAUGAAGAGGUU&AGCCUAUUUAUUUUUAG-UUCU	3	0.999875134613737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN8581_c0_g1_1075_TPlot.pdf
TRINITY_DN8581_c0_g1:1076	si_a18	TRINITY_DN8581_c0_g1	1064	1085	1076	-26.30	-17.30	0.657794676806084	7.5	2-6,1084-1080;8-18,1078-1068;19-21,1066-1064	1-1,1085-1085[UP5];7-7,1079-1079[SIL];x-x,1067-1067[BULt]	(((.(((((((((((.(((((.&.))))).)))))))))))-)))	GAGUCUGAAGAUGAAGAGGUUG&AAGCCUAUUUAUUUUUAG-UUC	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN8581_c0_g1_1076_TPlot.pdf
TRINITY_DN8581_c0_g1:1077	si_s93	TRINITY_DN8581_c0_g1	1065	1086	1077	-34.80	-23.10	0.663793103448276	9	1-2,1086-1085;5-12,1082-1075;13-21,1073-1065	3-4,1084-1083[SIL];x-x,1074-1074[BULt]	(((((((((.((((((((..((&))..))))))))-)))))))))	AGUCUGAAGAUGAAGAGGUUGA&UCUUCUUCUUCG-CUUCGGAUU	4	0.999999999996286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN8581_c0_g1_1077_TPlot.pdf
TRINITY_DN8581_c0_g1:1113	si_a775	TRINITY_DN8581_c0_g1	1095	1122	1113	-27.20	-18.10	0.665441176470588	18	1-11,1122-1112;12-21,1104-1095	x-x,1111-1105[BULt]	((((((((((.......(((((((((((&)))))))))))-------))))))))))	GAGUAGAAGAAAAAGAUGUUGAAUUGGU&AUUGAUUCAAC-------UCUUCUAUUU	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN8581_c0_g1_1113_TPlot.pdf
TRINITY_DN8581_c0_g1:206	si_s79	TRINITY_DN8581_c0_g1	191	215	206	-26.20	-17.80	0.679389312977099	11	1-4,215-212;6-12,210-204;13-21,199-191	5-5,211-211[SIL];x-x,203-200[BULt]	(((((((((....(((((((.((((&)))).)))))))----)))))))))	GAGGAGAAAAUCUGGAAAGAUAAAA&UUUUUUCUUUCC----UUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8581_c0_g1_206_TPlot.pdf
TRINITY_DN8581_c0_g1:207	si_s78	TRINITY_DN8581_c0_g1	192	216	207	-26.20	-17.60	0.67175572519084	6.5	1-5,216-212;7-13,210-204;14-21,199-192	6-6,211-211[SIL];x-x,203-200[BULt]	((((((((....(((((((.(((((&))))).)))))))----))))))))	AGGAGAAAAUCUGGAAAGAUAAAAA&UUUUUUUCUUUCC----UUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8581_c0_g1_207_TPlot.pdf
TRINITY_DN8581_c0_g1:208	si_s77	TRINITY_DN8581_c0_g1	193	217	208	-25.50	-17.00	0.666666666666667	6.5	1-6,217-212;8-14,210-204;15-21,199-193	7-7,211-211[SIL];x-x,203-200[BULt]	(((((((....(((((((.((((((&)))))).)))))))----)))))))	GGAGAAAAUCUGGAAAGAUAAAAAA&UUUUUUUUCUUUCC----UUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8581_c0_g1_208_TPlot.pdf
TRINITY_DN8581_c0_g1:209	si_s76	TRINITY_DN8581_c0_g1	194	218	209	-23.60	-16.00	0.677966101694915	6.5	1-7,218-212;9-15,210-204;16-21,199-194	8-8,211-211[SIL];x-x,203-200[BULt]	((((((....(((((((.(((((((&))))))).)))))))----))))))	GAGAAAAUCUGGAAAGAUAAAAAAU&AUUUUUUUUCUUUCC----UUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8581_c0_g1_209_TPlot.pdf
TRINITY_DN8581_c0_g1:210	si_s75	TRINITY_DN8581_c0_g1	195	219	210	-24.00	-15.80	0.658333333333333	6	1-8,219-212;10-16,210-204;17-21,199-195	9-9,211-211[SIL];x-x,203-200[BULt]	(((((....(((((((.((((((((&)))))))).)))))))----)))))	AGAAAAUCUGGAAAGAUAAAAAAUA&UAUUUUUUUUCUUUCC----UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8581_c0_g1_210_TPlot.pdf
TRINITY_DN8583_c1_g1:2318	si_a141	TRINITY_DN8583_c1_g1	2307	2327	2318	-23.80	-16.30	0.684873949579832	9	4-14,2324-2314;16-19,2312-2309	1-3,2327-2325[UP5];15-15,2313-2313[SIL];20-21,2308-2307[UP3]	..((((.(((((((((((...&...))))))))))).))))..	UCGAACUGCAACGAUUAAAAC&UAAUUAAUCGUUGUUGUUUUA	4	0.999999954524497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN8583_c1_g1_2318_TPlot.pdf
TRINITY_DN8584_c0_g2:87	si_a172	TRINITY_DN8584_c0_g2	76	96	87	-31.90	-22.50	0.705329153605016	10	3-17,94-80	1-2,96-95[UP5];18-21,79-76[UP3]	....(((((((((((((((..&..)))))))))))))))....	UCACUGUUUGGAUGGGUGACC&AUUCACCCGUCUAGAUAAUAU	3	0.809860374747636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a172_TRINITY_DN8584_c0_g2_87_TPlot.pdf
TRINITY_DN8584_c0_g2:88	si_a171	TRINITY_DN8584_c0_g2	77	97	88	-32.10	-22.50	0.700934579439252	10.5	4-18,94-80	1-3,97-95[UP5];19-21,79-77[UP3]	...(((((((((((((((...&...)))))))))))))))...	CACUGUUUGGAUGGGUGACCG&UAUUCACCCGUCUAGAUAAUA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN8584_c0_g2_88_TPlot.pdf
TRINITY_DN8584_c0_g2:91	si_a168	TRINITY_DN8584_c0_g2	80	108	91	-34.40	-23.00	0.668604651162791	19	2-6,107-103;7-21,94-80	1-1,108-108[UP5];x-x,102-95[BULt]	(((((((((((((((........(((((.&.)))))--------)))))))))))))))	UGUUUGGAUGGGUGACCGAGCUUAUAGAG&AUCUAU--------UCACCCGUCUAGAUA	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN8584_c0_g2_91_TPlot.pdf
TRINITY_DN8584_c1_g1:2167	si_a635	TRINITY_DN8584_c1_g1	2156	2176	2167	-26.10	-17.40	0.666666666666667	8.5	1-17,2176-2160	18-21,2159-2156[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAGGUUCAAAGGAAUUGACGU&AUGUCGAUUUUUUUGAGUAAU	4	0.999999999885721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN8584_c1_g1_2167_TPlot.pdf
TRINITY_DN8584_c1_g1:557	si_a648	TRINITY_DN8584_c1_g1	547	566	557	-31.10	-21.00	0.67524115755627	5.5	1-10,566-557;12-19,556-549	11-11,x-x[BULq];20-21,548-547[UP3]	..((((((((-((((((((((&)))))))))).))))))))..	GCUUUCCUGG-AUAUUACUCA&UGAGUAAUAUAUCGGGAAAUG	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN8584_c1_g1_557_TPlot.pdf
TRINITY_DN8584_c1_g1:561	si_a644	TRINITY_DN8584_c1_g1	551	570	561	-29.30	-20.10	0.686006825938567	7	3-14,568-557;16-21,556-551	1-2,570-569[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UCCUGG-AUAUUACUCAGGCG&UUUUUGAGUAAUAUAUCGGGA	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN8584_c1_g1_561_TPlot.pdf
TRINITY_DN8585_c0_g2:440	si_s248	TRINITY_DN8585_c0_g2	430	449	440	-31.90	-22.50	0.705329153605016	5.5	3-12,447-438;14-14,436-436;16-21,435-430	1-2,449-448[UP5];13-13,437-437[SIL];15-15,x-x[BULq]	((((((-(.((((((((((..&..)))))))))).).))))))	UGAUAU-UGGGGAAAUGCCAA&UAGGCAUUUCCCGAUAUAUUA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN8585_c0_g2_440_TPlot.pdf
TRINITY_DN858_c0_g1:2724	si_a494	TRINITY_DN858_c0_g1	2714	2733	2724	-29.50	-20.00	0.677966101694915	8	3-11,2731-2723;14-18,2721-2717;20-21,2715-2714	1-2,2733-2732[UP5];12-13,2722-2722[AILq];19-19,2716-2716[SIL]	((.(((((.-(((((((((..&..)))))))))..))))).))	GAUGACGAU-GACGACAUAGA&AAUAUGUCGUUUUUCGUCUUC	3	0.999999991154675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN858_c0_g1_2724_TPlot.pdf
TRINITY_DN858_c0_g1:2759	si_a407	TRINITY_DN858_c0_g1	2748	2769	2759	-19.80	-13.90	0.702020202020202	7.5	2-7,2768-2763;8-18,2761-2751	1-1,2769-2769[UP5];x-x,2762-2762[BULt];19-21,2750-2748[UP3]	...(((((((((((.((((((.&.))))))-)))))))))))...	GAGUGAAUAUAGACGAAAACAU&UUGUUUU-GUUUAUAUUUAAAU	2	0.999993028122401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN858_c0_g1_2759_TPlot.pdf
TRINITY_DN8591_c0_g2:787	si_s552	TRINITY_DN8591_c0_g2	776	796	787	-21.10	-14.30	0.677725118483412	12.5	7-21,790-776	1-6,796-791[UP5]	(((((((((((((((......&......)))))))))))))))	CGAAGAUAUUAAUUUCUUCAA&AAAAUAGAAUUAAUAUUUUCG	2	0.970832676907669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN8591_c0_g2_787_TPlot.pdf
TRINITY_DN8591_c1_g1:410	si_s68	TRINITY_DN8591_c1_g1	399	419	410	-23.10	-15.50	0.670995670995671	10.5	1-15,419-405	16-21,404-399[UP3]	......(((((((((((((((&)))))))))))))))......	AAUAUCAAGGGGUGGAAGUUG&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8591_c1_g1_410_TPlot.pdf
TRINITY_DN8592_c0_g1:1522	si_s149	TRINITY_DN8592_c0_g1	1511	1531	1522	-37.20	-24.40	0.655913978494624	9.5	5-21,1527-1511	1-4,1531-1528[UP5]	(((((((((((((((((....&....)))))))))))))))))	UCAUGAACCUUUUUUGGUUUG&AAACCCAAAGGAGGUUCAUGG	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s149_TRINITY_DN8592_c0_g1_1522_TPlot.pdf
TRINITY_DN8593_c0_g1:112	si_s69	TRINITY_DN8593_c0_g1	101	120	112	-23.40	-15.30	0.653846153846154	8	2-7,119-114;9-19,113-103	1-1,120-120[UP5];8-8,x-x[BULq];20-21,102-101[UP3]	..(((((((((((-((((((.&.)))))).)))))))))))..	CUGAGAAGAAAGA-AGAGGUG&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8593_c0_g1_112_TPlot.pdf
TRINITY_DN8593_c0_g1:149	si_a79	TRINITY_DN8593_c0_g1	138	158	149	-22.20	-15.70	0.707207207207207	8.5	2-16,157-143	1-1,158-158[UP5];17-21,142-138[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CCAAAUAGUGAUGAAAGACAU&UUGUUUUUCAUUAUUAAGAAA	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN8593_c0_g1_149_TPlot.pdf
TRINITY_DN8593_c0_g1:151	si_a77	TRINITY_DN8593_c0_g1	140	160	151	-22.20	-15.70	0.707207207207207	10	4-18,157-143	1-3,160-158[UP5];19-21,142-140[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAAUAGUGAUGAAAGACAUGA&AAUUGUUUUUCAUUAUUAAGA	4	0.998804760916441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN8593_c0_g1_151_TPlot.pdf
TRINITY_DN8593_c0_g1:154	si_a74	TRINITY_DN8593_c0_g1	143	160	154	-22.20	-15.80	0.711711711711712	8	1-3,160-158;7-21,157-143	4-6,x-x[BULq]	(((((((((((((((---(((&)))...)))))))))))))))	UAGUGAUGAAAGACA---UGA&UCAAAUUGUUUUUCAUUAUUA	4	0.999770772997031	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN8593_c0_g1_154_TPlot.pdf
TRINITY_DN8593_c0_g1:195	si_a406	TRINITY_DN8593_c0_g1	185	204	195	-19.80	-13.20	0.666666666666667	4	1-12,204-193;14-18,192-188	13-13,x-x[BULq];19-21,187-185[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	AGGAAAUA-AAACAAAACAAU&AUUGUUUUGUUUAUAUUUAAA	2	0.999999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8593_c0_g1_195_TPlot.pdf
TRINITY_DN8593_c0_g1:196	si_a405	TRINITY_DN8593_c0_g1	186	205	196	-19.80	-13.50	0.681818181818182	4	2-13,204-193;15-19,192-188	1-1,205-205[UP5];14-14,x-x[BULq];20-21,187-186[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	GGAAAUA-AAACAAAACAAUG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8593_c0_g1_196_TPlot.pdf
TRINITY_DN8593_c0_g1:349	si_s312	TRINITY_DN8593_c0_g1	334	358	349	-29.00	-20.00	0.689655172413793	13.5	5-13,354-346;14-20,341-335	1-4,358-355[UP5];x-x,345-342[BULt];21-21,334-334[UP3]	.(((((((....(((((((((....&....)))))))))----))))))).	AGACAAGAAAUAAGGGCAGAAGUGA&AAAAUUCUGUCCU----UCUUGUUA	4	0.999997400495416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN8593_c0_g1_349_TPlot.pdf
TRINITY_DN8593_c0_g1:67	si_s83	TRINITY_DN8593_c0_g1	55	75	67	-30.90	-23.60	0.763754045307443	5	1-5,75-71;7-10,70-67;11-21,65-55	6-6,x-x[BULq];x-x,66-66[BULt]	(((((((((((.((((-(((((&))))).))))-)))))))))))	GAAGAAGAAGACAAGG-GAGAA&UUCUUUCCUU-UCUUCUUCUUC	4	0.999976333671521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8593_c0_g1_67_TPlot.pdf
TRINITY_DN8593_c0_g1:71	si_s78	TRINITY_DN8593_c0_g1	60	80	71	-26.20	-18.50	0.706106870229008	5	1-10,80-71;12-15,70-67;16-21,65-60	11-11,x-x[BULq];x-x,66-66[BULt]	((((((.((((-((((((((((&)))))))))).))))-))))))	AGAAGACAAGG-GAGAAAGAAA&UUUUUUUCUUUCCUU-UCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8593_c0_g1_71_TPlot.pdf
TRINITY_DN8598_c0_g1:909	si_a406	TRINITY_DN8598_c0_g1	898	918	909	-19.80	-13.80	0.696969696969697	8	2-19,917-900	1-1,918-918[UP5];20-21,899-898[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAUAAGUGUGAAUGAAAUAAA&AUUGUUUUGUUUAUAUUUAAA	4	0.999999999999668	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8598_c0_g1_909_TPlot.pdf
TRINITY_DN859_c0_g1:1558	si_a346	TRINITY_DN859_c0_g1	1546	1567	1558	-25.90	-17.00	0.656370656370656	7.5	1-5,1567-1563;7-10,1561-1558;11-18,1556-1549	6-6,1562-1562[SIL];x-x,1557-1557[BULt];19-21,1548-1546[UP3]	...((((((((.((((.(((((&))))).))))-))))))))...	GUCAGAGUUAAUUAUUAUCGGG&CCCGAAAAUA-UUAAUUCUAUU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN859_c0_g1_1558_TPlot.pdf
TRINITY_DN859_c0_g1:1559	si_a345	TRINITY_DN859_c0_g1	1547	1568	1559	-26.90	-18.40	0.684014869888476	6.5	1-6,1568-1563;8-11,1561-1558;12-19,1556-1549	7-7,1562-1562[SIL];x-x,1557-1557[BULt];20-21,1548-1547[UP3]	..((((((((.((((.((((((&)))))).))))-))))))))..	UCAGAGUUAAUUAUUAUCGGGA&UCCCGAAAAUA-UUAAUUCUAU	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a345_TRINITY_DN859_c0_g1_1559_TPlot.pdf
TRINITY_DN859_c0_g1:1560	si_a344	TRINITY_DN859_c0_g1	1548	1569	1560	-28.50	-19.70	0.691228070175439	6	1-7,1569-1563;9-12,1561-1558;13-20,1556-1549	8-8,1562-1562[SIL];x-x,1557-1557[BULt];21-21,1548-1548[UP3]	.((((((((.((((.(((((((&))))))).))))-)))))))).	CAGAGUUAAUUAUUAUCGGGAU&GUCCCGAAAAUA-UUAAUUCUA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN859_c0_g1_1560_TPlot.pdf
TRINITY_DN859_c0_g1:1561	si_a343	TRINITY_DN859_c0_g1	1549	1570	1561	-28.80	-19.50	0.677083333333333	5.5	2-8,1569-1563;10-13,1561-1558;14-21,1556-1549	1-1,1570-1570[UP5];9-9,1562-1562[SIL];x-x,1557-1557[BULt]	((((((((.((((.(((((((.&.))))))).))))-))))))))	AGAGUUAAUUAUUAUCGGGAUC&UGUCCCGAAAAUA-UUAAUUCU	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a343_TRINITY_DN859_c0_g1_1561_TPlot.pdf
TRINITY_DN859_c0_g1:1753	si_s77	TRINITY_DN859_c0_g1	1741	1762	1753	-25.50	-16.82	0.659607843137255	6.5	1-13,1762-1750;17-21,1745-1741	14-16,1749-1746[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	GAGGAUCCCGAAAGAAAGAGAA&UUUUUUUUCUUUC-CUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN859_c0_g1_1753_TPlot.pdf
TRINITY_DN85_c0_g1:2923	si_s816	TRINITY_DN85_c0_g1	2912	2932	2923	-24.90	-16.28	0.653815261044177	9	2-12,2931-2921;16-19,2917-2914	1-1,2932-2932[UP5];13-15,2920-2918[SIL];20-21,2913-2912[UP3]	..((((...(((((((((((.&.)))))))))))...))))..	AGUCAUGAGUGGGAAGAGGUU&UACCUUUUCUUAAUAAUGAAA	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN85_c0_g1_2923_TPlot.pdf
TRINITY_DN85_c0_g1:3038	si_a217	TRINITY_DN85_c0_g1	3027	3049	3038	-27.00	-18.30	0.677777777777778	9	1-6,3049-3044;7-18,3041-3030	x-x,3043-3042[BULt];19-21,3029-3027[UP3]	...((((((((((((..((((((&))))))--))))))))))))...	GUCAACAUGAGUUUACCGUUGGU&ACUAAU--UAAACUCAUGUUUCU	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a217_TRINITY_DN85_c0_g1_3038_TPlot.pdf
TRINITY_DN85_c0_g1:3040	si_a215	TRINITY_DN85_c0_g1	3029	3051	3040	-27.80	-18.70	0.672661870503597	10	3-8,3049-3044;9-20,3041-3030	1-2,3051-3050[UP5];x-x,3043-3042[BULt];21-21,3029-3029[UP3]	.((((((((((((..((((((..&..))))))--)))))))))))).	CAACAUGAGUUUACCGUUGGUGA&CGACUAAU--UAAACUCAUGUUU	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a215_TRINITY_DN85_c0_g1_3040_TPlot.pdf
TRINITY_DN85_c0_g1:4052	si_a139	TRINITY_DN85_c0_g1	4042	4063	4052	-25.90	-17.10	0.66023166023166	9.5	1-8,4063-4056;9-13,4053-4049;15-21,4048-4042	x-x,4055-4054[BULt];14-14,x-x[BULq]	(((((((-(((((..((((((((&))))))))--))))).)))))))	GGACGAC-ACGGUCUUGAUUGCU&AGUAAUUA--AUCGUUGUUGUUU	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN85_c0_g1_4052_TPlot.pdf
TRINITY_DN85_c0_g1:4053	si_a138	TRINITY_DN85_c0_g1	4043	4064	4053	-26.30	-17.20	0.653992395437262	9.5	1-9,4064-4056;10-14,4053-4049;16-21,4048-4043	x-x,4055-4054[BULt];15-15,x-x[BULq]	((((((-(((((..(((((((((&)))))))))--))))).))))))	GACGAC-ACGGUCUUGAUUGCUG&UAGUAAUUA--AUCGUUGUUGUU	3	0.99983422187433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN85_c0_g1_4053_TPlot.pdf
TRINITY_DN85_c0_g1:4518	si_a723	TRINITY_DN85_c0_g1	4506	4527	4518	-35.10	-23.20	0.660968660968661	11.5	4-14,4524-4514;16-18,4511-4509	1-3,4527-4525[UP5];15-15,4513-4512[AILt];19-21,4508-4506[UP3]	...(((..(((((((((((...&...)))))))))))-.)))...	CAUGGACGGCCCGAGUGACCAA&AUCGUUACUCGGGC-AUCUUUA	3	0.99602040040693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN85_c0_g1_4518_TPlot.pdf
TRINITY_DN85_c0_g1:4519	si_a722	TRINITY_DN85_c0_g1	4507	4528	4519	-34.70	-23.20	0.668587896253602	12.5	5-15,4524-4514;17-19,4511-4509	1-4,4528-4525[UP5];16-16,4513-4512[AILt];20-21,4508-4507[UP3]	..(((..(((((((((((....&....)))))))))))-.)))..	AUGGACGGCCCGAGUGACCAAC&AAUCGUUACUCGGGC-AUCUUU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN85_c0_g1_4519_TPlot.pdf
TRINITY_DN85_c0_g1:4520	si_a721	TRINITY_DN85_c0_g1	4508	4529	4520	-35.10	-23.20	0.660968660968661	13.5	6-16,4524-4514;18-20,4511-4509	1-5,4529-4525[UP5];17-17,4513-4512[AILt];21-21,4508-4508[UP3]	.(((..(((((((((((.....&.....)))))))))))-.))).	UGGACGGCCCGAGUGACCAACG&UAAUCGUUACUCGGGC-AUCUU	2	0.922032289872356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN85_c0_g1_4520_TPlot.pdf
TRINITY_DN85_c0_g1:4521	si_a720	TRINITY_DN85_c0_g1	4509	4530	4521	-35.30	-23.20	0.657223796033994	14.5	7-17,4524-4514;19-21,4511-4509	1-6,4530-4525[UP5];18-18,4513-4512[AILt]	(((..(((((((((((......&......)))))))))))-.)))	GGACGGCCCGAGUGACCAACGA&AUAAUCGUUACUCGGGC-AUCU	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN85_c0_g1_4521_TPlot.pdf
TRINITY_DN85_c0_g1:4523	si_a718	TRINITY_DN85_c0_g1	4512	4532	4523	-32.60	-22.00	0.674846625766871	18	9-19,4524-4514	1-8,4532-4525[UP5];20-21,4513-4512[UP3]	..(((((((((((........&........)))))))))))..	CGGCCCGAGUGACCAACGAAA&AAAUAAUCGUUACUCGGGCAU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a718_TRINITY_DN85_c0_g1_4523_TPlot.pdf
TRINITY_DN85_c0_g1:4682	si_s80	TRINITY_DN85_c0_g1	4671	4691	4682	-28.20	-24.40	0.865248226950355	5.5	1-11,4691-4681;13-21,4679-4671	12-12,4680-4680[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	GGAGAGGAGCGGGAAGAAAGA&UUUUUCUUUCCUUUCUUCUUC	4	0.830557709058486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN85_c0_g1_4682_TPlot.pdf
TRINITY_DN85_c0_g1:4688	si_s74	TRINITY_DN85_c0_g1	4677	4697	4688	-25.00	-19.30	0.772	6	2-17,4696-4681;19-21,4679-4677	1-1,4697-4697[UP5];18-18,4680-4680[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GAGCGGGAAGAAAGAAGAUGU&CUAUUUUUUUUCUUUCCUUUC	3	0.999869975360223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN85_c0_g1_4688_TPlot.pdf
TRINITY_DN85_c0_g1:9809	si_s81	TRINITY_DN85_c0_g1	9798	9818	9809	-28.90	-19.60	0.678200692041523	7.5	3-12,9816-9807;15-21,9804-9798	1-2,9818-9817[UP5];13-14,9806-9805[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AGAAGAGCCGAGGAAGGAACA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN85_c0_g1_9809_TPlot.pdf
TRINITY_DN85_c1_g1:483	si_s526	TRINITY_DN85_c1_g1	465	492	483	-25.60	-17.20	0.671875	13	4-13,489-480;14-21,472-465	1-3,492-490[UP5];x-x,479-473[BULt]	((((((((.......((((((((((...&...))))))))))-------))))))))	GAUCAAAAAGAAGCCAUGGUUUCGAUUA&AAUUCGAAAUCAU-------UUUUGAUC	2	0.947646541210743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s526_TRINITY_DN85_c1_g1_483_TPlot.pdf
TRINITY_DN85_c2_g1:3647	si_s71	TRINITY_DN85_c2_g1	3636	3655	3647	-25.70	-17.00	0.66147859922179	12	1-5,3655-3651;11-21,3646-3636	6-10,3650-3647[AILq]	(((((((((((....-(((((&))))).....)))))))))))	AGGGAGGAAGAUUUA-AGAAG&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN85_c2_g1_3647_TPlot.pdf
TRINITY_DN85_c2_g1:4118	si_a503	TRINITY_DN85_c2_g1	4104	4127	4118	-32.10	-21.70	0.67601246105919	7.5	1-15,4127-4113;16-21,4109-4104	x-x,4112-4110[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	CGUUUUGAGAAGGAAGGCGGAAGA&UUUUUCGUCUUCCUU---GGAAUG	2	0.999601828450175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN85_c2_g1_4118_TPlot.pdf
TRINITY_DN85_c2_g1:4119	si_a502	TRINITY_DN85_c2_g1	4096	4128	4119	-32.10	-22.40	0.697819314641745	16	1-15,4128-4114;16-21,4101-4096	x-x,4113-4102[BULt]	((((((............(((((((((((((((&)))))))))))))))------------))))))	GUUCCACCCGUUUUGAGAAGGAAGGCGGAAGAU&GUUUUUCGUCUUCCU------------UGGAAU	2	0.999302878551916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN85_c2_g1_4119_TPlot.pdf
TRINITY_DN85_c2_g1:4120	si_a501	TRINITY_DN85_c2_g1	4109	4129	4120	-33.50	-21.80	0.650746268656716	9	2-17,4128-4113	1-1,4129-4129[UP5];18-21,4112-4109[UP3]	....((((((((((((((((.&.))))))))))))))))....	UGAGAAGGAAGGCGGAAGAUU&CGUUUUUCGUCUUCCUUGGAA	3	0.999999999999987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN85_c2_g1_4120_TPlot.pdf
TRINITY_DN85_c2_g1:4122	si_s78	TRINITY_DN85_c2_g1	4111	4130	4122	-26.20	-17.30	0.66030534351145	11.5	4-9,4127-4122;12-21,4120-4111	1-3,4130-4128[UP5];10-11,4121-4121[AILq]	((((((((((.-((((((...&...))))))..))))))))))	AGAAGGAAGGC-GGAAGAUUU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN85_c2_g1_4122_TPlot.pdf
TRINITY_DN85_c2_g1:4590	si_a70	TRINITY_DN85_c2_g1	4573	4599	4590	-23.90	-15.90	0.665271966527197	9	1-11,4599-4589;13-15,4587-4585;16-21,4578-4573	12-12,4588-4588[SIL];x-x,4584-4579[BULt]	((((((......(((.(((((((((((&))))))))))).)))------))))))	GAUGAAGCGGUGGAAGAAUUUGAAAGA&UCUUUCAAAUUGUUU------UUCAUU	3	0.99999999994723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN85_c2_g1_4590_TPlot.pdf
TRINITY_DN85_c2_g1:4783	si_a71	TRINITY_DN85_c2_g1	4770	4792	4783	-23.30	-16.00	0.686695278969957	11	1-6,4792-4787;8-12,4785-4781;13-20,4778-4771	7-7,4786-4786[SIL];x-x,4780-4779[BULt];21-21,4770-4770[UP3]	.((((((((..(((((.((((((&)))))).)))))--)))))))).	AGAUGAAGACAGCAAUAUGGAGG&CUUUCAAAUUGU--UUUUCAUUA	3	0.999999899600981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN85_c2_g1_4783_TPlot.pdf
TRINITY_DN85_c2_g1:4784	si_a70	TRINITY_DN85_c2_g1	4771	4793	4784	-23.90	-15.70	0.656903765690377	8	1-7,4793-4787;9-13,4785-4781;14-21,4778-4771	8-8,4786-4786[SIL];x-x,4780-4779[BULt]	((((((((..(((((.(((((((&))))))).)))))--))))))))	GAUGAAGACAGCAAUAUGGAGGG&UCUUUCAAAUUGU--UUUUCAUU	3	0.999999999999134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN85_c2_g1_4784_TPlot.pdf
TRINITY_DN8604_c1_g1:892	si_s446	TRINITY_DN8604_c1_g1	880	901	892	-21.30	-14.50	0.68075117370892	7	1-5,901-897;7-12,895-890;13-21,888-880	6-6,896-896[SIL];x-x,889-889[BULt]	(((((((((.((((((.(((((&))))).))))))-)))))))))	UGGUUGUUGUUUGUGUUUAAUA&UAUUAUAUAUAA-CAACAAUUA	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN8604_c1_g1_892_TPlot.pdf
TRINITY_DN8604_c1_g1:894	si_s491	TRINITY_DN8604_c1_g1	882	903	894	-19.50	-13.20	0.676923076923077	10	5-18,899-886;19-21,884-882	1-4,903-900[UP5];x-x,885-885[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	GUUGUUGUUUGUGUUUAAUAUA&UUAUUUAAAUAUAAACAA-AAC	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN8604_c1_g1_894_TPlot.pdf
TRINITY_DN8605_c0_g1:2291	si_s76	TRINITY_DN8605_c0_g1	2281	2300	2291	-23.60	-16.50	0.699152542372881	6.5	1-3,2300-2298;5-17,2296-2284;19-21,2283-2281	4-4,2297-2297[SIL];18-18,x-x[BULq]	(((-(((((((((((((.(((&))).))))))))))))).)))	GAG-AAGGAGAGGGAAAUAAU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8605_c0_g1_2291_TPlot.pdf
TRINITY_DN8607_c2_g1:1338	si_s552	TRINITY_DN8607_c2_g1	1327	1347	1338	-21.10	-15.10	0.71563981042654	8	3-7,1345-1341;9-20,1339-1328	1-2,1347-1346[UP5];8-8,1340-1340[SIL];21-21,1327-1327[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	UGAAAAUAUUGAUGCUGUUGG&AAAAUAGAAUUAAUAUUUUCG	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s552_TRINITY_DN8607_c2_g1_1338_TPlot.pdf
TRINITY_DN8607_c2_g1:2596	si_a474	TRINITY_DN8607_c2_g1	2586	2605	2596	-23.60	-15.60	0.661016949152542	8	1-5,2605-2601;8-13,2598-2593;15-21,2592-2586	6-7,2600-2599[SIL];14-14,x-x[BULq]	(((((((-((((((..(((((&)))))..)))))).)))))))	UCUGUAU-GCAGUAUCUGCAU&AUGUAAUUAUUGUUAUAUAGA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN8607_c2_g1_2596_TPlot.pdf
TRINITY_DN8608_c0_g1:1298	si_a544	TRINITY_DN8608_c0_g1	1286	1307	1298	-28.90	-18.80	0.650519031141869	6.5	1-7,1307-1301;9-17,1299-1291;18-21,1289-1286	8-8,1300-1300[SIL];x-x,1290-1290[BULt]	((((.(((((((((.(((((((&))))))).)))))))))-))))	UAAGUGAAAUAGAUAGGGCUGA&UCGGUUCAAUCUAUUUC-UUUA	2	0.997889528026194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN8608_c0_g1_1298_TPlot.pdf
TRINITY_DN8608_c0_g1:58	si_s7	TRINITY_DN8608_c0_g1	47	67	58	-21.70	-14.60	0.672811059907834	10.5	3-16,65-52	1-2,67-66[UP5];17-21,51-47[UP3]	.....((((((((((((((..&..)))))))))))))).....	GACGUGUAGUAGUAGGUAAAA&UAUUACUUAUUAUUACUAUAU	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN8608_c0_g1_58_TPlot.pdf
TRINITY_DN8611_c0_g1:307	si_s71	TRINITY_DN8611_c0_g1	298	316	307	-25.70	-17.40	0.67704280155642	6	2-15,315-302;18-21,301-298	1-1,316-316[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	AGGA--GAAAAAGAGUGGAAA&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8611_c0_g1_307_TPlot.pdf
TRINITY_DN8611_c0_g1:310	si_s68	TRINITY_DN8611_c0_g1	299	319	310	-23.10	-16.60	0.718614718614719	11	5-21,315-299	1-4,319-316[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGAGAAAAAGAGUGGAAAAAA&CAACUUCUAUUUUUUUUCUUU	2	0.999967370818476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8611_c0_g1_310_TPlot.pdf
TRINITY_DN8611_c0_g1:822	si_s891	TRINITY_DN8611_c0_g1	811	831	822	-29.60	-20.00	0.675675675675676	14.5	7-20,825-812	1-6,831-826[UP5];21-21,811-811[UP3]	.((((((((((((((......&......)))))))))))))).	CUGGAGAGAAGGCUUUAAAAU&AUAAAUAGGCUUUCUCUUCAA	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s891_TRINITY_DN8611_c0_g1_822_TPlot.pdf
TRINITY_DN8611_c0_g1:843	si_s53	TRINITY_DN8611_c0_g1	832	855	843	-31.20	-21.10	0.676282051282051	10.5	2-9,854-847;10-13,843-840;15-20,838-833	1-1,855-855[UP5];x-x,846-844[BULt];14-14,839-839[SIL];21-21,832-832[UP3]	.((((((.((((...((((((((.&.))))))))---)))).)))))).	UGGUUGCCAACUCAUUGAGAUCCG&UGGAUUUCA---AGUUAGCAACUU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s53_TRINITY_DN8611_c0_g1_843_TPlot.pdf
TRINITY_DN8611_c0_g1:888	si_s814	TRINITY_DN8611_c0_g1	877	896	888	-26.60	-19.70	0.740601503759398	6	1-9,896-888;11-20,887-878	10-10,x-x[BULq];21-21,877-877[UP3]	.((((((((((-(((((((((&))))))))).)))))))))).	AUAUUGUUAAG-GAAGGUGAC&GUUACCUUUUCUUAAUAAUGA	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN8611_c0_g1_888_TPlot.pdf
TRINITY_DN8611_c0_g1:890	si_s811	TRINITY_DN8611_c0_g1	880	899	890	-26.40	-18.00	0.681818181818182	8.5	4-12,896-888;14-21,887-880	1-3,899-897[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	UUGUUAAG-GAAGGUGACAAA&UUCGUUACCUUUUCUUAAUAA	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN8611_c0_g1_890_TPlot.pdf
TRINITY_DN8611_c0_g1:891	si_s810	TRINITY_DN8611_c0_g1	881	900	891	-27.90	-18.90	0.67741935483871	5	1-3,900-898;5-13,896-888;15-21,887-881	4-4,897-897[SIL];14-14,x-x[BULq]	(((((((-(((((((((.(((&))).))))))))).)))))))	UGUUAAG-GAAGGUGACAAAG&CUUCGUUACCUUUUCUUAAUA	3	0.999998456089634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN8611_c0_g1_891_TPlot.pdf
TRINITY_DN8611_c0_g1:898	si_s803	TRINITY_DN8611_c0_g1	887	907	898	-26.00	-17.90	0.688461538461538	9.5	4-10,904-898;12-21,896-887	1-3,907-905[UP5];11-11,897-897[SIL]	((((((((((.(((((((...&...))))))).))))))))))	GGAAGGUGACAAAGGUAAUAA&AUUUUAUCUUCGUUACCUUUU	3	0.999999986191918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8611_c0_g1_898_TPlot.pdf
TRINITY_DN8612_c0_g1:3985	si_s197	TRINITY_DN8612_c0_g1	3972	3994	3985	-29.20	-19.10	0.654109589041096	7.5	2-11,3993-3984;12-16,3982-3978;17-21,3976-3972	1-1,3994-3994[UP5];x-x,3983-3983[BULt];x-x,3977-3977[BULt]	(((((.(((((.((((((((((.&.))))))))))-)))))-)))))	AGCUGAGUACAGUUUCAAAGUGG&UUAUUUUGGAA-UGUAC-CAGUU	3	0.999946643592022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s197_TRINITY_DN8612_c0_g1_3985_TPlot.pdf
TRINITY_DN8612_c1_g1:121	si_a783	TRINITY_DN8612_c1_g1	110	135	121	-24.70	-16.50	0.668016194331984	17	3-5,133-131;6-21,125-110	1-2,135-134[UP5];x-x,130-126[BULt]	((((((((((((((((.....(((..&..)))-----))))))))))))))))	GGGUAGAAGGAUGGAAAAUGUGAGGU&AACUC-----UUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8612_c1_g1_121_TPlot.pdf
TRINITY_DN8616_c0_g1:2525	si_a407	TRINITY_DN8616_c0_g1	2514	2534	2525	-19.80	-13.10	0.661616161616162	11.5	3-15,2532-2520	1-2,2534-2533[UP5];16-21,2519-2514[UP3]	......(((((((((((((..&..)))))))))))))......	AGAUACAUGUGAACGAAACGU&UUGUUUUGUUUAUAUUUAAAU	2	0.999999999999421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8616_c0_g1_2525_TPlot.pdf
TRINITY_DN8616_c0_g1:2526	si_a406	TRINITY_DN8616_c0_g1	2515	2535	2526	-19.80	-13.10	0.661616161616162	12.5	4-16,2532-2520	1-3,2535-2533[UP5];17-21,2519-2515[UP3]	.....(((((((((((((...&...))))))))))))).....	GAUACAUGUGAACGAAACGUA&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8616_c0_g1_2526_TPlot.pdf
TRINITY_DN8616_c0_g1:4438	si_s436	TRINITY_DN8616_c0_g1	4420	4447	4438	-19.60	-14.60	0.744897959183673	7.5	1-13,4447-4435;14-21,4427-4420	x-x,4434-4428[BULt]	((((((((.......(((((((((((((&)))))))))))))-------))))))))	UAUAUAUAUUUUGUUGUAUGUAAUUAUU&AAUAAUUACAUAU-------UAUAUAUA	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN8616_c0_g1_4438_TPlot.pdf
TRINITY_DN8616_c0_g1:4439	si_s435	TRINITY_DN8616_c0_g1	4421	4448	4439	-20.90	-15.70	0.751196172248804	7.5	1-14,4448-4435;15-21,4427-4421	x-x,4434-4428[BULt]	(((((((.......((((((((((((((&))))))))))))))-------)))))))	AUAUAUAUUUUGUUGUAUGUAAUUAUUG&CAAUAAUUACAUAU-------UAUAUAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN8616_c0_g1_4439_TPlot.pdf
TRINITY_DN8616_c0_g1:4440	si_s434	TRINITY_DN8616_c0_g1	4429	4449	4440	-21.50	-16.90	0.786046511627907	4	1-15,4449-4435;17-19,4433-4431	16-16,4434-4434[SIL];20-21,4430-4429[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UUUGUUGUAUGUAAUUAUUGU&ACAAUAAUUACAUAUUAUAUA	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN8616_c0_g1_4440_TPlot.pdf
TRINITY_DN8616_c0_g1:4441	si_s433	TRINITY_DN8616_c0_g1	4430	4450	4441	-21.10	-17.10	0.81042654028436	4	2-16,4449-4435;18-20,4433-4431	1-1,4450-4450[UP5];17-17,4434-4434[SIL];21-21,4430-4430[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	UUGUUGUAUGUAAUUAUUGUA&AACAAUAAUUACAUAUUAUAU	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN8616_c0_g1_4441_TPlot.pdf
TRINITY_DN8616_c0_g1:4442	si_s432	TRINITY_DN8616_c0_g1	4431	4451	4442	-21.30	-17.00	0.7981220657277	5	3-17,4449-4435;19-21,4433-4431	1-2,4451-4450[UP5];18-18,4434-4434[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	UGUUGUAUGUAAUUAUUGUAA&UAACAAUAAUUACAUAUUAUA	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN8616_c0_g1_4442_TPlot.pdf
TRINITY_DN8616_c0_g1:4443	si_s431	TRINITY_DN8616_c0_g1	4432	4452	4443	-21.10	-16.30	0.772511848341232	8.5	4-18,4449-4435	1-3,4452-4450[UP5];19-21,4434-4432[UP3]	...(((((((((((((((...&...)))))))))))))))...	GUUGUAUGUAAUUAUUGUAAU&AUAACAAUAAUUACAUAUUAU	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN8616_c0_g1_4443_TPlot.pdf
TRINITY_DN8616_c0_g1:4446	si_s428	TRINITY_DN8616_c0_g1	4435	4455	4446	-21.50	-18.80	0.874418604651163	2.5	1-5,4455-4451;7-21,4449-4435	6-6,4450-4450[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GUAUGUAAUUAUUGUAAUAUA&UAUAUAACAAUAAUUACAUAU	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN8616_c0_g1_4446_TPlot.pdf
TRINITY_DN8616_c0_g1:4448	si_s426	TRINITY_DN8616_c0_g1	4437	4457	4448	-23.60	-16.30	0.690677966101695	5	3-7,4455-4451;9-21,4449-4437	1-2,4457-4456[UP5];8-8,4450-4450[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AUGUAAUUAUUGUAAUAUAUC&UCUAUAUAACAAUAAUUACAU	2	0.520169700901194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN8616_c0_g1_4448_TPlot.pdf
TRINITY_DN8616_c0_g2:2879	si_s436	TRINITY_DN8616_c0_g2	2861	2888	2879	-19.60	-14.60	0.744897959183673	7.5	1-13,2888-2876;14-21,2868-2861	x-x,2875-2869[BULt]	((((((((.......(((((((((((((&)))))))))))))-------))))))))	UAUAUAUAUUUUGUUGUAUGUAAUUAUU&AAUAAUUACAUAU-------UAUAUAUA	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN8616_c0_g2_2879_TPlot.pdf
TRINITY_DN8616_c0_g2:2881	si_s434	TRINITY_DN8616_c0_g2	2870	2890	2881	-21.50	-16.90	0.786046511627907	4	1-15,2890-2876;17-19,2874-2872	16-16,2875-2875[SIL];20-21,2871-2870[UP3]	..(((.(((((((((((((((&))))))))))))))).)))..	UUUGUUGUAUGUAAUUAUUGU&ACAAUAAUUACAUAUUAUAUA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN8616_c0_g2_2881_TPlot.pdf
TRINITY_DN8616_c0_g2:2883	si_s432	TRINITY_DN8616_c0_g2	2872	2892	2883	-21.30	-17.00	0.7981220657277	5	3-17,2890-2876;19-21,2874-2872	1-2,2892-2891[UP5];18-18,2875-2875[SIL]	(((.(((((((((((((((..&..))))))))))))))).)))	UGUUGUAUGUAAUUAUUGUAA&UAACAAUAAUUACAUAUUAUA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN8616_c0_g2_2883_TPlot.pdf
TRINITY_DN8616_c0_g2:2889	si_s426	TRINITY_DN8616_c0_g2	2878	2898	2889	-23.60	-16.30	0.690677966101695	5	3-7,2896-2892;9-21,2890-2878	1-2,2898-2897[UP5];8-8,2891-2891[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AUGUAAUUAUUGUAAUAUAUC&UCUAUAUAACAAUAAUUACAU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s426_TRINITY_DN8616_c0_g2_2889_TPlot.pdf
TRINITY_DN861_c0_g1:1439	si_a546	TRINITY_DN861_c0_g1	1428	1451	1439	-28.60	-20.40	0.713286713286713	9.5	1-7,1451-1445;8-15,1441-1434;17-21,1432-1428	x-x,1444-1442[BULt];16-16,1433-1433[SIL]	(((((.((((((((...(((((((&)))))))---)))))))).)))))	GAUAAUGGAGUAGACUAUUGGACC&GGUUCAA---UCUAUUUCUUUAUC	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN861_c0_g1_1439_TPlot.pdf
TRINITY_DN861_c0_g1:1471	si_a556	TRINITY_DN861_c0_g1	1460	1481	1471	-33.40	-23.20	0.694610778443114	7.5	1-5,1481-1477;6-11,1475-1470;13-21,1468-1460	x-x,1476-1476[BULt];12-12,1469-1469[SIL]	(((((((((.((((((.(((((&)))))-)))))).)))))))))	UUCAUGGGGCGAUAAAUGGGGU&AUUUC-UUUAUCUCCCCGUGAA	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN861_c0_g1_1471_TPlot.pdf
TRINITY_DN861_c0_g1:1472	si_a555	TRINITY_DN861_c0_g1	1461	1482	1472	-33.70	-22.90	0.679525222551929	7	1-6,1482-1477;7-12,1475-1470;14-21,1468-1461	x-x,1476-1476[BULt];13-13,1469-1469[SIL]	((((((((.((((((.((((((&))))))-)))))).))))))))	UCAUGGGGCGAUAAAUGGGGUG&UAUUUC-UUUAUCUCCCCGUGA	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a555_TRINITY_DN861_c0_g1_1472_TPlot.pdf
TRINITY_DN861_c0_g1:1478	si_a558	TRINITY_DN861_c0_g1	1458	1487	1478	-35.40	-23.10	0.652542372881356	22.5	1-10,1487-1478;11-20,1468-1459	x-x,1477-1469[BULt];21-21,1458-1458[UP3]	.((((((((((.........((((((((((&))))))))))---------)))))))))).	AAUUCAUGGGGCGAUAAAUGGGGUGAAGAA&UUCUUUAUCU---------CCCCGUGAAUC	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN861_c0_g1_1478_TPlot.pdf
TRINITY_DN861_c0_g1:1479	si_a557	TRINITY_DN861_c0_g1	1459	1488	1479	-33.40	-23.50	0.703592814371258	22	1-11,1488-1478;12-21,1468-1459	x-x,1477-1469[BULt]	((((((((((.........(((((((((((&)))))))))))---------))))))))))	AUUCAUGGGGCGAUAAAUGGGGUGAAGAAG&UUUCUUUAUCU---------CCCCGUGAAU	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a557_TRINITY_DN861_c0_g1_1479_TPlot.pdf
TRINITY_DN861_c0_g1:1480	si_a329	TRINITY_DN861_c0_g1	1464	1489	1480	-29.60	-19.60	0.662162162162162	13	2-13,1488-1477;14-20,1471-1465	1-1,1489-1489[UP5];x-x,1476-1472[BULt];21-21,1464-1464[UP3]	.(((((((.....((((((((((((.&.))))))))))))-----))))))).	UGGGGCGAUAAAUGGGGUGAAGAAGG&AUUUUUUUAUUCC-----UUGUCCCG	3	0.999999980121405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN861_c0_g1_1480_TPlot.pdf
TRINITY_DN861_c0_g1:658	si_s62	TRINITY_DN861_c0_g1	647	669	658	-26.50	-17.90	0.675471698113208	11.5	1-8,669-662;9-10,659-658;13-21,655-647	x-x,661-660[BULt];11-12,657-656[SIL]	(((((((((..((..((((((((&))))))))--))..)))))))))	AGGAGAUAGUUGUAAUGCUGGCU&AGUUAGCA--ACUUCUAUUUUUU	3	0.999741210433914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN861_c0_g1_658_TPlot.pdf
TRINITY_DN8626_c0_g1:193	si_s63	TRINITY_DN8626_c0_g1	182	202	193	-25.80	-17.00	0.65891472868217	9.5	1-9,202-194;11-14,192-189	10-10,193-193[SIL];15-21,188-182[UP3]	.......((((.(((((((((&))))))))).)))).......	AGUAUUCUGGAUGUUGCUAAC&GUUAGCAACUUCUAUUUUUUU	3	0.999999963512878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN8626_c0_g1_193_TPlot.pdf
TRINITY_DN8626_c0_g1:194	si_s62	TRINITY_DN8626_c0_g1	183	203	194	-26.50	-18.10	0.683018867924528	8.5	1-10,203-194;12-15,192-189	11-11,193-193[SIL];16-21,188-183[UP3]	......((((.((((((((((&)))))))))).))))......	GUAUUCUGGAUGUUGCUAACU&AGUUAGCAACUUCUAUUUUUU	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN8626_c0_g1_194_TPlot.pdf
TRINITY_DN8626_c0_g1:195	si_s61	TRINITY_DN8626_c0_g1	184	204	195	-26.50	-19.00	0.716981132075472	7.5	1-11,204-194;13-16,192-189	12-12,193-193[SIL];17-21,188-184[UP3]	.....((((.(((((((((((&))))))))))).)))).....	UAUUCUGGAUGUUGCUAACUU&AAGUUAGCAACUUCUAUUUUU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN8626_c0_g1_195_TPlot.pdf
TRINITY_DN8626_c0_g1:196	si_s60	TRINITY_DN8626_c0_g1	185	205	196	-28.20	-19.10	0.677304964539007	6.5	2-12,204-194;14-17,192-189	1-1,205-205[UP5];13-13,193-193[SIL];18-21,188-185[UP3]	....((((.(((((((((((.&.))))))))))).))))....	AUUCUGGAUGUUGCUAACUUU&CAAGUUAGCAACUUCUAUUUU	2	0.914934817964766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN8626_c0_g1_196_TPlot.pdf
TRINITY_DN8626_c0_g1:197	si_s59	TRINITY_DN8626_c0_g1	186	207	197	-29.20	-20.00	0.684931506849315	6.5	1-4,207-204;5-13,202-194;15-18,192-189	x-x,203-203[BULt];14-14,193-193[SIL];19-21,188-186[UP3]	...((((.(((((((((.((((&))))-))))))))).))))...	UUCUGGAUGUUGCUAACUUUGA&UCAA-GUUAGCAACUUCUAUUU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN8626_c0_g1_197_TPlot.pdf
TRINITY_DN8626_c0_g1:198	si_s58	TRINITY_DN8626_c0_g1	187	208	198	-29.30	-20.90	0.713310580204778	5.5	1-5,208-204;6-14,202-194;16-19,192-189	x-x,203-203[BULt];15-15,193-193[SIL];20-21,188-187[UP3]	..((((.(((((((((.(((((&)))))-))))))))).))))..	UCUGGAUGUUGCUAACUUUGAA&UUCAA-GUUAGCAACUUCUAUU	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN8626_c0_g1_198_TPlot.pdf
TRINITY_DN8626_c0_g1:199	si_s57	TRINITY_DN8626_c0_g1	188	209	199	-29.30	-21.80	0.744027303754266	4.5	1-6,209-204;7-15,202-194;17-20,192-189	x-x,203-203[BULt];16-16,193-193[SIL];21-21,188-188[UP3]	.((((.(((((((((.((((((&))))))-))))))))).)))).	CUGGAUGUUGCUAACUUUGAAA&UUUCAA-GUUAGCAACUUCUAU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN8626_c0_g1_199_TPlot.pdf
TRINITY_DN8626_c0_g1:200	si_s56	TRINITY_DN8626_c0_g1	189	210	200	-29.20	-21.70	0.743150684931507	4.5	2-7,209-204;8-16,202-194;18-21,192-189	1-1,210-210[UP5];x-x,203-203[BULt];17-17,193-193[SIL]	((((.(((((((((.((((((.&.))))))-))))))))).))))	UGGAUGUUGCUAACUUUGAAAG&AUUUCAA-GUUAGCAACUUCUA	2	0.285409779300513	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN8626_c0_g1_200_TPlot.pdf
TRINITY_DN8626_c0_g1:201	si_s55	TRINITY_DN8626_c0_g1	190	211	201	-30.80	-20.50	0.665584415584416	6.5	3-8,209-204;9-17,202-194;19-21,192-190	1-2,211-210[UP5];x-x,203-203[BULt];18-18,193-193[SIL]	(((.(((((((((.((((((..&..))))))-))))))))).)))	GGAUGUUGCUAACUUUGAAAGU&GAUUUCAA-GUUAGCAACUUCU	2	0.78365400116673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN8626_c0_g1_201_TPlot.pdf
TRINITY_DN8628_c0_g1:109	si_s556	TRINITY_DN8628_c0_g1	99	115	109	-28.50	-20.20	0.708771929824561	10	1-7,115-109;12-21,108-99	8-11,x-x[BULq]	((((((((((----(((((((&)))))))....))))))))))	GUCCCGAGGA----GAUUCUA&UAGAAUUAAUAUUUUCGGGAC	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s556_TRINITY_DN8628_c0_g1_109_TPlot.pdf
TRINITY_DN8630_c2_g1:2475	si_a504	TRINITY_DN8630_c2_g1	2465	2484	2475	-32.90	-22.00	0.668693009118541	6	1-11,2484-2474;13-21,2473-2465	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	ACAUUCUGA-GAGGAUGAAGA&UUUUCGUCUUCCUUGGAAUGU	3	0.999981751745231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN8630_c2_g1_2475_TPlot.pdf
TRINITY_DN8630_c2_g1:2476	si_a503	TRINITY_DN8630_c2_g1	2466	2485	2476	-32.10	-21.10	0.657320872274143	5.5	1-12,2485-2474;14-21,2473-2466	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	CAUUCUGA-GAGGAUGAAGAG&UUUUUCGUCUUCCUUGGAAUG	3	0.999999998417255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN8630_c2_g1_2476_TPlot.pdf
TRINITY_DN8630_c2_g1:2497	si_s75	TRINITY_DN8630_c2_g1	2482	2506	2497	-24.00	-15.90	0.6625	10.5	3-16,2504-2491;17-21,2486-2482	1-2,2506-2505[UP5];x-x,2490-2487[BULt]	(((((....((((((((((((((..&..))))))))))))))----)))))	AGAGGUAUUGGGAAGAAAAGAGAGG&UAUUUUUUUUCUUUCC----UUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8630_c2_g1_2497_TPlot.pdf
TRINITY_DN8630_c2_g1:2593	si_s525	TRINITY_DN8630_c2_g1	2582	2602	2593	-24.00	-16.80	0.7	5.5	2-14,2601-2589;16-18,2587-2585;20-21,2583-2582	1-1,2602-2602[UP5];15-15,2588-2588[SIL];19-19,2584-2584[SIL]	((.(((.(((((((((((((.&.))))))))))))).))).))	AUGGAGCGUGAUUUCGAGUUC&UAAUUCGAAAUCAUUUUUGAU	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN8630_c2_g1_2593_TPlot.pdf
TRINITY_DN8630_c2_g1:2594	si_s524	TRINITY_DN8630_c2_g1	2583	2603	2594	-23.90	-15.60	0.652719665271967	7.5	3-15,2601-2589;17-19,2587-2585;21-21,2583-2583	1-2,2603-2602[UP5];16-16,2588-2588[SIL];20-20,2584-2584[SIL]	(.(((.(((((((((((((..&..))))))))))))).))).)	UGGAGCGUGAUUUCGAGUUCU&UUAAUUCGAAAUCAUUUUUGA	4	0.999914895530184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN8630_c2_g1_2594_TPlot.pdf
TRINITY_DN8630_c2_g2:39	si_a79	TRINITY_DN8630_c2_g2	28	48	39	-22.20	-15.70	0.707207207207207	8.5	3-16,46-33;18-20,31-29	1-2,48-47[UP5];17-17,32-32[SIL];21-21,28-28[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	AUUCAUAGUGGUGAGAAACCA&UUGUUUUUCAUUAUUAAGAAA	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN8630_c2_g2_39_TPlot.pdf
TRINITY_DN8633_c0_g1:1652	si_s71	TRINITY_DN8633_c0_g1	1635	1661	1652	-25.70	-17.20	0.669260700389105	9	1-13,1661-1649;14-16,1647-1645;17-21,1639-1635	x-x,1648-1648[BULt];x-x,1644-1640[BULt]	(((((.....(((.(((((((((((((&)))))))))))))-)))-----)))))	AGGAAAAACCAGAUAAAGAAGUGGAAG&CUUCUAUUUUUUU-UCU-----UUCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8633_c0_g1_1652_TPlot.pdf
TRINITY_DN8633_c0_g1:1653	si_s70	TRINITY_DN8633_c0_g1	1636	1662	1653	-25.80	-17.70	0.686046511627907	9	1-14,1662-1649;15-17,1647-1645;18-21,1639-1636	x-x,1648-1648[BULt];x-x,1644-1640[BULt]	((((.....(((.((((((((((((((&))))))))))))))-)))-----))))	GGAAAAACCAGAUAAAGAAGUGGAAGU&ACUUCUAUUUUUUU-UCU-----UUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8633_c0_g1_1653_TPlot.pdf
TRINITY_DN8633_c0_g1:867	si_a140	TRINITY_DN8633_c0_g1	855	874	867	-25.20	-16.40	0.650793650793651	8	1-4,874-871;7-12,870-865;13-21,863-855	5-6,x-x[BULq];x-x,864-864[BULt]	(((((((((.((((((--((((&))))..))))))-)))))))))	AAAGCAGCAGACGAUU--UUGC&GUAAUUAAUCGU-UGUUGUUUU	4	0.99999999928247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN8633_c0_g1_867_TPlot.pdf
TRINITY_DN863_c0_g1:1296	si_a789	TRINITY_DN863_c0_g1	1285	1305	1296	-24.80	-16.20	0.653225806451613	8.5	3-15,1303-1291;17-20,1289-1286	1-2,1305-1304[UP5];16-16,1290-1290[SIL];21-21,1285-1285[UP3]	.((((.(((((((((((((..&..))))))))))))).)))).	UUUGGCGAAUGGAAAGAUGUA&UCUAUUUUUCUAUUUUCCAAU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN863_c0_g1_1296_TPlot.pdf
TRINITY_DN863_c0_g1:1963	si_s83	TRINITY_DN863_c0_g1	1952	1972	1963	-30.90	-21.80	0.705501618122977	7.5	2-5,1971-1968;7-12,1966-1961;14-21,1959-1952	1-1,1972-1972[UP5];6-6,1967-1967[SIL];13-13,1960-1960[SIL]	((((((((.((((((.((((.&.)))).)))))).))))))))	GGAGAAGAUGGAGGGCAGGAU&UUCUUUCCUUUCUUCUUCUUC	4	0.999999999999993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN863_c0_g1_1963_TPlot.pdf
TRINITY_DN863_c0_g1:2207	si_a764	TRINITY_DN863_c0_g1	2196	2216	2207	-28.90	-19.40	0.671280276816609	10.5	3-15,2214-2202	1-2,2216-2215[UP5];16-21,2201-2196[UP3]	......(((((((((((((..&..)))))))))))))......	UGUCACCGAUCAGAAACCCUU&UUGGGUUUUUGAUUGAUUCAA	3	0.999998456089634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN863_c0_g1_2207_TPlot.pdf
TRINITY_DN863_c0_g1:2208	si_a763	TRINITY_DN863_c0_g1	2197	2217	2208	-28.80	-19.40	0.673611111111111	11.5	4-16,2214-2202	1-3,2217-2215[UP5];17-21,2201-2197[UP3]	.....(((((((((((((...&...))))))))))))).....	GUCACCGAUCAGAAACCCUUA&UUUGGGUUUUUGAUUGAUUCA	4	0.999999896158245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN863_c0_g1_2208_TPlot.pdf
TRINITY_DN863_c0_g1:2210	si_a761	TRINITY_DN863_c0_g1	2199	2219	2210	-30.10	-21.50	0.714285714285714	9.5	2-3,2218-2217;6-18,2214-2202	1-1,2219-2219[UP5];4-5,2216-2215[SIL];19-21,2201-2199[UP3]	...(((((((((((((..((.&.))..)))))))))))))...	CACCGAUCAGAAACCCUUAGA&CCUUUGGGUUUUUGAUUGAUU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN863_c0_g1_2210_TPlot.pdf
TRINITY_DN863_c0_g1:2212	si_a759	TRINITY_DN863_c0_g1	2201	2221	2212	-32.60	-21.50	0.659509202453988	11	4-5,2218-2217;8-20,2214-2202	1-3,2221-2219[UP5];6-7,2216-2215[SIL];21-21,2201-2201[UP3]	.(((((((((((((..((...&...))..))))))))))))).	CCGAUCAGAAACCCUUAGACG&CUCCUUUGGGUUUUUGAUUGA	3	0.999999800174655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN863_c0_g1_2212_TPlot.pdf
TRINITY_DN863_c0_g1:2360	si_s257	TRINITY_DN863_c0_g1	2349	2369	2360	-28.30	-18.40	0.65017667844523	9	2-3,2368-2367;5-15,2365-2355	1-1,2369-2369[UP5];4-4,2366-2366[SIL];16-21,2354-2349[UP3]	......(((((((((((.((.&.)).)))))))))))......	CGAACAGAGUAAUAUAUGGGA&CCCGAUAUAUUACUCAAAAAA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s257_TRINITY_DN863_c0_g1_2360_TPlot.pdf
TRINITY_DN863_c0_g1:2361	si_s256	TRINITY_DN863_c0_g1	2350	2369	2361	-29.30	-19.80	0.675767918088737	7	1-4,2369-2366;6-16,2365-2355	5-5,x-x[BULq];17-21,2354-2350[UP3]	.....(((((((((((-((((&)))).))))))))))).....	GAACAGAGUAAUAUAU-GGGA&UCCCGAUAUAUUACUCAAAAA	4	0.738613032854097	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s256_TRINITY_DN863_c0_g1_2361_TPlot.pdf
TRINITY_DN863_c0_g1:2362	si_s255	TRINITY_DN863_c0_g1	2351	2370	2362	-29.40	-20.70	0.704081632653061	6	1-5,2370-2366;7-17,2365-2355	6-6,x-x[BULq];18-21,2354-2351[UP3]	....(((((((((((-(((((&))))).)))))))))))....	AACAGAGUAAUAUAU-GGGAA&UUCCCGAUAUAUUACUCAAAA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN863_c0_g1_2362_TPlot.pdf
TRINITY_DN863_c0_g1:2363	si_s254	TRINITY_DN863_c0_g1	2352	2371	2363	-29.40	-21.10	0.717687074829932	5.5	1-6,2371-2366;8-18,2365-2355	7-7,x-x[BULq];19-21,2354-2352[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	ACAGAGUAAUAUAU-GGGAAG&UUUCCCGAUAUAUUACUCAAA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s254_TRINITY_DN863_c0_g1_2363_TPlot.pdf
TRINITY_DN863_c0_g1:2364	si_s253	TRINITY_DN863_c0_g1	2353	2372	2364	-29.50	-22.40	0.759322033898305	5	1-7,2372-2366;9-19,2365-2355	8-8,x-x[BULq];20-21,2354-2353[UP3]	..(((((((((((-(((((((&))))))).)))))))))))..	CAGAGUAAUAUAU-GGGAAGU&AUUUCCCGAUAUAUUACUCAA	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN863_c0_g1_2364_TPlot.pdf
TRINITY_DN863_c0_g1:2365	si_s252	TRINITY_DN863_c0_g1	2354	2373	2365	-31.10	-22.50	0.723472668810289	5	2-8,2372-2366;10-20,2365-2355	1-1,2373-2373[UP5];9-9,x-x[BULq];21-21,2354-2354[UP3]	.(((((((((((-(((((((.&.))))))).))))))))))).	AGAGUAAUAUAU-GGGAAGUU&CAUUUCCCGAUAUAUUACUCA	2	0.328523837579086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s252_TRINITY_DN863_c0_g1_2365_TPlot.pdf
TRINITY_DN863_c0_g1:2377	si_s804	TRINITY_DN863_c0_g1	2366	2386	2377	-27.90	-18.20	0.652329749103943	6	3-14,2384-2373;16-21,2371-2366	1-2,2386-2385[UP5];15-15,2372-2372[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	GGGAAGUUAAUGAAGAUAAUA&UUUUAUCUUCGUUACCUUUUC	4	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN863_c0_g1_2377_TPlot.pdf
TRINITY_DN863_c0_g1:2616	si_a73	TRINITY_DN863_c0_g1	2605	2627	2616	-21.90	-14.60	0.666666666666667	8	2-8,2626-2620;9-19,2617-2607	1-1,2627-2627[UP5];x-x,2619-2618[BULt];20-21,2606-2605[UP3]	..(((((((((((..(((((((.&.)))))))--)))))))))))..	AUUAGUGGAAAACUAAAUUUGAU&UUCAAAUU--GUUUUUCAUUAUU	2	0.999999732599147	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN863_c0_g1_2616_TPlot.pdf
TRINITY_DN863_c0_g1:2617	si_a72	TRINITY_DN863_c0_g1	2606	2628	2617	-21.90	-14.60	0.666666666666667	9	3-9,2626-2620;10-20,2617-2607	1-2,2628-2627[UP5];x-x,2619-2618[BULt];21-21,2606-2606[UP3]	.(((((((((((..(((((((..&..)))))))--))))))))))).	UUAGUGGAAAACUAAAUUUGAUG&UUUCAAAUU--GUUUUUCAUUAU	4	0.999999999996916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN863_c0_g1_2617_TPlot.pdf
TRINITY_DN863_c0_g1:2620	si_a71	TRINITY_DN863_c0_g1	2607	2629	2620	-23.30	-15.80	0.678111587982833	8	1-2,2629-2628;4-10,2626-2620;11-21,2617-2607	3-3,2627-2627[SIL];x-x,2619-2618[BULt]	(((((((((((..(((((((.((&)).)))))))--)))))))))))	UAGUGGAAAACUAAAUUUGAUGG&CUUUCAAAUU--GUUUUUCAUUA	2	0.999992298202354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN863_c0_g1_2620_TPlot.pdf
TRINITY_DN863_c0_g1:440	si_a438	TRINITY_DN863_c0_g1	429	449	440	-31.70	-20.90	0.659305993690852	7.5	2-17,448-433	1-1,449-449[UP5];18-21,432-429[UP3]	....((((((((((((((((.&.))))))))))))))))....	AACGGUUUUAUAUCCAAUGGC&UCCGUUGGAUAUGAGAUAAUU	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN863_c0_g1_440_TPlot.pdf
TRINITY_DN8642_c1_g2:257	si_a639	TRINITY_DN8642_c1_g2	244	266	257	-23.60	-16.30	0.690677966101695	8	1-10,266-257;11-19,254-246	x-x,256-255[BULt];20-21,245-244[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	UAAUAUUACUUUAGAAAAAAUCG&CGAUUUUUUU--GAGUAAUAUAU	4	0.999930768499528	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN8642_c1_g2_257_TPlot.pdf
TRINITY_DN8642_c1_g2:258	si_a638	TRINITY_DN8642_c1_g2	245	267	258	-24.40	-16.30	0.668032786885246	8	2-11,266-257;12-20,254-246	1-1,267-267[UP5];x-x,256-255[BULt];21-21,245-245[UP3]	.(((((((((..((((((((((.&.))))))))))--))))))))).	AAUAUUACUUUAGAAAAAAUCGU&UCGAUUUUUUU--GAGUAAUAUA	4	0.999998907638569	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN8642_c1_g2_258_TPlot.pdf
TRINITY_DN8647_c0_g1:1073	si_a637	TRINITY_DN8647_c0_g1	1062	1082	1073	-25.80	-16.78	0.650387596899225	12.5	1-6,1082-1077;10-16,1073-1067	7-9,1076-1074[SIL];17-21,1066-1062[UP3]	.....(((((((...((((((&))))))...))))))).....	UCGCCGCUCAAAUUUGUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.999999999999168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN8647_c0_g1_1073_TPlot.pdf
TRINITY_DN8647_c0_g1:1074	si_a636	TRINITY_DN8647_c0_g1	1063	1083	1074	-26.30	-17.78	0.676045627376426	11.5	1-7,1083-1077;11-17,1073-1067	8-10,1076-1074[SIL];18-21,1066-1063[UP3]	....(((((((...(((((((&)))))))...)))))))....	CGCCGCUCAAAUUUGUCGACA&UGUCGAUUUUUUUGAGUAAUA	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN8647_c0_g1_1074_TPlot.pdf
TRINITY_DN8647_c0_g1:1075	si_a635	TRINITY_DN8647_c0_g1	1064	1084	1075	-26.10	-17.78	0.681226053639847	11.5	2-8,1083-1077;12-18,1073-1067	1-1,1084-1084[UP5];9-11,1076-1074[SIL];19-21,1066-1064[UP3]	...(((((((...(((((((.&.)))))))...)))))))...	GCCGCUCAAAUUUGUCGACAA&AUGUCGAUUUUUUUGAGUAAU	2	0.999950182013822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN8647_c0_g1_1075_TPlot.pdf
TRINITY_DN8647_c0_g1:1076	si_a634	TRINITY_DN8647_c0_g1	1065	1085	1076	-26.40	-17.78	0.673484848484849	12.5	3-9,1083-1077;13-19,1073-1067	1-2,1085-1084[UP5];10-12,1076-1074[SIL];20-21,1066-1065[UP3]	..(((((((...(((((((..&..)))))))...)))))))..	CCGCUCAAAUUUGUCGACAAG&UAUGUCGAUUUUUUUGAGUAA	2	0.999962114789459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN8647_c0_g1_1076_TPlot.pdf
TRINITY_DN8647_c0_g1:1077	si_a633	TRINITY_DN8647_c0_g1	1066	1086	1077	-26.40	-17.78	0.673484848484849	12.5	4-10,1083-1077;14-20,1073-1067	1-3,1086-1084[UP5];11-13,1076-1074[SIL];21-21,1066-1066[UP3]	.(((((((...(((((((...&...)))))))...))))))).	CGCUCAAAUUUGUCGACAAGC&UUAUGUCGAUUUUUUUGAGUA	2	0.999962583392229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN8647_c0_g1_1077_TPlot.pdf
TRINITY_DN8647_c0_g1:1078	si_a632	TRINITY_DN8647_c0_g1	1067	1087	1078	-26.10	-17.58	0.673563218390804	12.5	5-11,1083-1077;15-21,1073-1067	1-4,1087-1084[UP5];12-14,1076-1074[SIL]	(((((((...(((((((....&....)))))))...)))))))	GCUCAAAUUUGUCGACAAGCU&AUUAUGUCGAUUUUUUUGAGU	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN8647_c0_g1_1078_TPlot.pdf
TRINITY_DN8647_c0_g1:1359	si_a399	TRINITY_DN8647_c0_g1	1348	1368	1359	-22.60	-14.70	0.650442477876106	7.5	2-15,1367-1354;17-20,1352-1349	1-1,1368-1368[UP5];16-16,1353-1353[SIL];21-21,1348-1348[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	UUGAAGAAAAUGGUUCUAUGG&AUAUAGAAUUGUUUUGUUUAU	3	0.999999999994856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN8647_c0_g1_1359_TPlot.pdf
TRINITY_DN8647_c0_g1:1360	si_a398	TRINITY_DN8647_c0_g1	1349	1369	1360	-22.40	-14.60	0.651785714285714	8.5	3-16,1367-1354;18-21,1352-1349	1-2,1369-1368[UP5];17-17,1353-1353[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	UGAAGAAAAUGGUUCUAUGGA&AAUAUAGAAUUGUUUUGUUUA	2	0.999999824861026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN8647_c0_g1_1360_TPlot.pdf
TRINITY_DN8647_c0_g1:2768	si_a465	TRINITY_DN8647_c0_g1	2757	2777	2768	-20.90	-13.80	0.660287081339713	10	1-8,2777-2770;11-20,2767-2758	9-10,2769-2768[SIL];21-21,2757-2757[UP3]	.((((((((((..((((((((&))))))))..)))))))))).	UGAUAAUUGCGCUUUGUGUGU&AUAUAUAAUAUGUAAUUAUUG	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN8647_c0_g1_2768_TPlot.pdf
TRINITY_DN8647_c0_g1:2769	si_a464	TRINITY_DN8647_c0_g1	2758	2778	2769	-19.60	-13.50	0.688775510204082	10	2-9,2777-2770;12-21,2767-2758	1-1,2778-2778[UP5];10-11,2769-2768[SIL]	((((((((((..((((((((.&.))))))))..))))))))))	GAUAAUUGCGCUUUGUGUGUU&UAUAUAUAAUAUGUAAUUAUU	3	0.997831869278476	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN8647_c0_g1_2769_TPlot.pdf
TRINITY_DN8647_c0_g1:3135	si_s752	TRINITY_DN8647_c0_g1	3124	3144	3135	-30.30	-20.40	0.673267326732673	7	3-15,3142-3130;18-20,3127-3125	1-2,3144-3143[UP5];16-17,3129-3128[SIL];21-21,3124-3124[UP3]	.(((..(((((((((((((..&..)))))))))))))..))).	ACGUAUUUGUUUUGAGGUCUC&UUGACCUUAAAACAACAACGA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s752_TRINITY_DN8647_c0_g1_3135_TPlot.pdf
TRINITY_DN8647_c0_g1:3136	si_s751	TRINITY_DN8647_c0_g1	3125	3145	3136	-29.40	-20.40	0.693877551020408	8	4-16,3142-3130;19-21,3127-3125	1-3,3145-3143[UP5];17-18,3129-3128[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	CGUAUUUGUUUUGAGGUCUCG&AUUGACCUUAAAACAACAACG	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s751_TRINITY_DN8647_c0_g1_3136_TPlot.pdf
TRINITY_DN8647_c0_g1:3141	si_s746	TRINITY_DN8647_c0_g1	3130	3150	3141	-27.00	-18.36	0.68	9.5	1-4,3150-3147;9-21,3142-3130	5-8,3146-3143[SIL]	(((((((((((((....((((&))))....)))))))))))))	UUGUUUUGAGGUCUCGGUGUU&AAUAGAUUGACCUUAAAACAA	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s746_TRINITY_DN8647_c0_g1_3141_TPlot.pdf
TRINITY_DN8647_c0_g1:740	si_s741	TRINITY_DN8647_c0_g1	729	749	740	-33.80	-22.30	0.659763313609467	8	1-4,749-746;7-10,743-740;12-19,738-731	5-6,745-744[SIL];11-11,739-739[SIL];20-21,730-729[UP3]	..((((((((.((((..((((&))))..)))).))))))))..	CCAAGGUCAACCUAUCAACCC&GGGUGAAUAGAUUGACCUUAA	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s741_TRINITY_DN8647_c0_g1_740_TPlot.pdf
TRINITY_DN8658_c0_g1:1524	si_s80	TRINITY_DN8658_c0_g1	1502	1533	1524	-28.20	-19.70	0.698581560283688	14	2-13,1532-1521;14-21,1509-1502	1-1,1533-1533[UP5];x-x,1520-1510[BULt]	((((((((...........((((((((((((.&.))))))))))))-----------))))))))	GAGGAGGAUUCGCAGCGGCAAGGAAAGAAAGC&UUUUUCUUUCCUU-----------UCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8658_c0_g1_1524_TPlot.pdf
TRINITY_DN8658_c0_g1:268	si_s76	TRINITY_DN8658_c0_g1	257	277	268	-23.60	-15.70	0.665254237288135	6	3-14,275-264;16-21,262-257	1-2,277-276[UP5];15-15,263-263[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AAGAGGAGAAAGAAAAAAGGA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8658_c0_g1_268_TPlot.pdf
TRINITY_DN8658_c0_g1:3861	si_s48	TRINITY_DN8658_c0_g1	3844	3870	3861	-28.80	-19.90	0.690972222222222	11.5	1-10,3870-3861;11-18,3857-3850;19-21,3846-3844	x-x,3860-3858[BULt];x-x,3849-3847[BULt]	(((...((((((((...((((((((((&))))))))))---))))))))---)))	GCUCUGGACUUGGAACUAUCCAGUUAU&AUAAUUGGAU---UUCAAGUU---AGC	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN8658_c0_g1_3861_TPlot.pdf
TRINITY_DN8658_c0_g1:3865	si_s44	TRINITY_DN8658_c0_g1	3851	3874	3865	-24.70	-16.70	0.676113360323887	11.5	5-14,3870-3861;15-21,3857-3851	1-4,3874-3871[UP5];x-x,3860-3858[BULt]	(((((((...((((((((((....&....))))))))))---)))))))	ACUUGGAACUAUCCAGUUAUAGAA&UUUAAUAAUUGGAU---UUCAAGU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s44_TRINITY_DN8658_c0_g1_3865_TPlot.pdf
TRINITY_DN8658_c0_g1:4149	si_a326	TRINITY_DN8658_c0_g1	4138	4157	4149	-26.20	-17.70	0.675572519083969	7	2-9,4156-4149;12-18,4147-4141;20-21,4139-4138	1-1,4157-4157[UP5];10-11,4148-4148[AILq];19-19,4140-4140[SIL]	((.(((((((.-((((((((.&.))))))))..))))))).))	GAGGAGGAGUU-AAAAAUCAA&AUGAUUUUUUUAUUCCUUGUC	2	0.999956556186919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN8658_c0_g1_4149_TPlot.pdf
TRINITY_DN8658_c0_g1:5181	si_a785	TRINITY_DN8658_c0_g1	5170	5190	5181	-25.90	-17.00	0.656370656370656	9.5	1-11,5190-5180;13-17,5178-5174	12-12,5179-5179[SIL];18-21,5173-5170[UP3]	....(((((.(((((((((((&))))))))))).)))))....	UGUUAUGGAUGAAUGGAAGGG&CUCUUCUAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN8658_c0_g1_5181_TPlot.pdf
TRINITY_DN8658_c0_g1:5182	si_a784	TRINITY_DN8658_c0_g1	5171	5191	5182	-24.70	-18.50	0.748987854251012	7.5	1-12,5191-5180;14-18,5178-5174	13-13,5179-5179[SIL];19-21,5173-5171[UP3]	...(((((.((((((((((((&)))))))))))).)))))...	GUUAUGGAUGAAUGGAAGGGU&ACUCUUCUAUUUUUCUAUUUU	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8658_c0_g1_5182_TPlot.pdf
TRINITY_DN8658_c0_g1:5183	si_a783	TRINITY_DN8658_c0_g1	5172	5192	5183	-24.70	-19.40	0.785425101214575	6	1-13,5192-5180;15-19,5178-5174	14-14,5179-5179[SIL];20-21,5173-5172[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UUAUGGAUGAAUGGAAGGGUU&AACUCUUCUAUUUUUCUAUUU	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN8658_c0_g1_5183_TPlot.pdf
TRINITY_DN8658_c0_g1:5184	si_a782	TRINITY_DN8658_c0_g1	5173	5193	5184	-26.40	-19.50	0.738636363636364	6	2-14,5192-5180;16-20,5178-5174	1-1,5193-5193[UP5];15-15,5179-5179[SIL];21-21,5173-5173[UP3]	.(((((.(((((((((((((.&.))))))))))))).))))).	UAUGGAUGAAUGGAAGGGUUU&CAACUCUUCUAUUUUUCUAUU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN8658_c0_g1_5184_TPlot.pdf
TRINITY_DN8658_c0_g1:5260	si_a313	TRINITY_DN8658_c0_g1	5249	5269	5260	-28.70	-19.80	0.689895470383275	10	1-9,5269-5261;11-16,5259-5254	10-10,5260-5260[SIL];17-21,5253-5249[UP3]	.....((((((.(((((((((&))))))))).)))))).....	AAACACAUGGGAAGAUCCAGG&CUUGGAUUUAUCCAUGAUUUU	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN8658_c0_g1_5260_TPlot.pdf
TRINITY_DN8658_c0_g1:5755	si_s633	TRINITY_DN8658_c0_g1	5744	5764	5755	-37.90	-28.00	0.738786279683377	6.5	2-19,5763-5746	1-1,5764-5764[UP5];20-21,5745-5744[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUGGCGGAUGCCUAUGAAGAA&CUUUUCGUAGGCGUUUGCCCU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN8658_c0_g1_5755_TPlot.pdf
TRINITY_DN8658_c0_g1:5758	si_s630	TRINITY_DN8658_c0_g1	5747	5767	5758	-35.60	-24.90	0.699438202247191	10.5	5-21,5763-5747	1-4,5767-5764[UP5]	(((((((((((((((((....&....)))))))))))))))))	GCGGAUGCCUAUGAAGAAGUA&GAUCUUUUCGUAGGCGUUUGC	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN8658_c0_g1_5758_TPlot.pdf
TRINITY_DN8658_c0_g1:5861	si_a69	TRINITY_DN8658_c0_g1	5850	5870	5861	-24.00	-16.40	0.683333333333333	9	1-8,5870-5863;11-19,5860-5852	9-10,5862-5861[SIL];20-21,5851-5850[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UGGAGGAACAAAAUGGAAGGA&UUCUUUCAAAUUGUUUUUCAU	3	0.99999996276671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8658_c0_g1_5861_TPlot.pdf
TRINITY_DN8658_c0_g1:5862	si_a68	TRINITY_DN8658_c0_g1	5851	5871	5862	-25.40	-16.60	0.653543307086614	9	2-9,5870-5863;12-20,5860-5852	1-1,5871-5871[UP5];10-11,5862-5861[SIL];21-21,5851-5851[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	GGAGGAACAAAAUGGAAGGAA&CUUCUUUCAAAUUGUUUUUCA	2	0.99999999915955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8658_c0_g1_5862_TPlot.pdf
TRINITY_DN8658_c0_g1:6712	si_s631	TRINITY_DN8658_c0_g1	6701	6721	6712	-36.00	-28.00	0.777777777777778	8.5	4-21,6718-6701	1-3,6721-6719[UP5]	((((((((((((((((((...&...))))))))))))))))))	GGCGGAUGCCUAUGAAGAAGU&AUCUUUUCGUAGGCGUUUGCC	4	0.266285569581121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s631_TRINITY_DN8658_c0_g1_6712_TPlot.pdf
TRINITY_DN8658_c0_g1:6713	si_s630	TRINITY_DN8658_c0_g1	6702	6722	6713	-35.60	-24.90	0.699438202247191	10.5	5-21,6718-6702	1-4,6722-6719[UP5]	(((((((((((((((((....&....)))))))))))))))))	GCGGAUGCCUAUGAAGAAGUA&GAUCUUUUCGUAGGCGUUUGC	3	0.959995923141991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN8658_c0_g1_6713_TPlot.pdf
TRINITY_DN8658_c0_g1:6816	si_a69	TRINITY_DN8658_c0_g1	6805	6825	6816	-24.00	-16.40	0.683333333333333	9	1-8,6825-6818;11-19,6815-6807	9-10,6817-6816[SIL];20-21,6806-6805[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UGGAGGAACAAAAUGGAAGGA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8658_c0_g1_6816_TPlot.pdf
TRINITY_DN8658_c0_g1:6817	si_a68	TRINITY_DN8658_c0_g1	6806	6826	6817	-25.40	-16.60	0.653543307086614	9	2-9,6825-6818;12-20,6815-6807	1-1,6826-6826[UP5];10-11,6817-6816[SIL];21-21,6806-6806[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	GGAGGAACAAAAUGGAAGGAA&CUUCUUUCAAAUUGUUUUUCA	2	0.999999998880991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8658_c0_g1_6817_TPlot.pdf
TRINITY_DN8658_c0_g1:6996	si_a29	TRINITY_DN8658_c0_g1	6985	7005	6996	-31.00	-21.00	0.67741935483871	4.5	2-13,7004-6993;16-20,6990-6986	1-1,7005-7005[UP5];14-15,6992-6991[SIL];21-21,6985-6985[UP3]	.(((((..((((((((((((.&.))))))))))))..))))).	GACUGGAAUUAGAACUAAAAG&UUUUUAGUUCUAAGACCGGUA	4	0.968818063712988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a29_TRINITY_DN8658_c0_g1_6996_TPlot.pdf
TRINITY_DN8658_c0_g1:7252	si_s69	TRINITY_DN8658_c0_g1	7241	7265	7252	-23.40	-15.70	0.670940170940171	13	1-7,7265-7259;8-14,7254-7248;16-21,7246-7241	x-x,7258-7255[BULt];15-15,7247-7247[SIL]	((((((.(((((((....(((((((&)))))))----))))))).))))))	GAGAGACGAAGAGUUGGAGGAAGUU&AACUUCU----AUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8658_c0_g1_7252_TPlot.pdf
TRINITY_DN8658_c0_g1:7665	si_s633	TRINITY_DN8658_c0_g1	7654	7674	7665	-37.90	-28.00	0.738786279683377	6.5	2-19,7673-7656	1-1,7674-7674[UP5];20-21,7655-7654[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UUGGCGGAUGCCUAUGAAGAA&CUUUUCGUAGGCGUUUGCCCU	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN8658_c0_g1_7665_TPlot.pdf
TRINITY_DN8658_c0_g1:7771	si_a69	TRINITY_DN8658_c0_g1	7760	7780	7771	-24.00	-16.40	0.683333333333333	9	1-8,7780-7773;11-19,7770-7762	9-10,7772-7771[SIL];20-21,7761-7760[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	UGGAGGAACAAAAUGGAAGGA&UUCUUUCAAAUUGUUUUUCAU	3	0.999999969590209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8658_c0_g1_7771_TPlot.pdf
TRINITY_DN8658_c0_g1:7772	si_a68	TRINITY_DN8658_c0_g1	7761	7781	7772	-25.40	-16.60	0.653543307086614	9	2-9,7780-7773;12-20,7770-7762	1-1,7781-7781[UP5];10-11,7772-7771[SIL];21-21,7761-7761[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	GGAGGAACAAAAUGGAAGGAA&CUUCUUUCAAAUUGUUUUUCA	2	0.99999999911665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8658_c0_g1_7772_TPlot.pdf
TRINITY_DN8658_c0_g1:8443	si_a637	TRINITY_DN8658_c0_g1	8432	8452	8443	-25.80	-16.90	0.655038759689922	12.5	1-8,8452-8445;11-16,8442-8437	9-10,8444-8443[SIL];17-21,8436-8432[UP3]	.....((((((..((((((((&))))))))..)))))).....	CACAAGCUCAACUGGAUCGGC&GUCGAUUUUUUUGAGUAAUAU	4	0.999999999993778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN8658_c0_g1_8443_TPlot.pdf
TRINITY_DN8658_c0_g1:8860	si_a60	TRINITY_DN8658_c0_g1	8846	8869	8860	-32.20	-22.50	0.698757763975155	12.5	2-11,8868-8859;12-18,8855-8849	1-1,8869-8869[UP5];x-x,8858-8856[BULt];19-21,8848-8846[UP3]	...(((((((...((((((((((.&.))))))))))---)))))))...	CUGUUGAGAGUAUGGGCGAGUCGU&UCGACUCGCUU---CUUUCAAAUU	4	0.921055496495092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a60_TRINITY_DN8658_c0_g1_8860_TPlot.pdf
TRINITY_DN8660_c0_g1:1559	si_a491	TRINITY_DN8660_c0_g1	1548	1568	1559	-29.90	-21.06	0.704347826086957	11	2-3,1567-1566;8-21,1561-1548	1-1,1568-1568[UP5];4-7,1565-1562[SIL]	((((((((((((((....((.&.))....))))))))))))))	GACGAAGGACGGCAGUGGCUU&UAGAAUAUGUCGUUUUUCGUC	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN8660_c0_g1_1559_TPlot.pdf
TRINITY_DN8660_c0_g1:1701	si_s67	TRINITY_DN8660_c0_g1	1690	1710	1701	-25.60	-17.30	0.67578125	8	1-15,1710-1696	16-21,1695-1690[UP3]	......(((((((((((((((&)))))))))))))))......	UAUCCCGAAAAUGGAAGUUGU&GCAACUUCUAUUUUUUUUCUU	4	0.999999999515261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8660_c0_g1_1701_TPlot.pdf
TRINITY_DN8660_c0_g1:1708	si_s60	TRINITY_DN8660_c0_g1	1697	1718	1708	-28.20	-18.40	0.652482269503546	10.5	4-6,1715-1713;7-21,1711-1697	1-3,1718-1716[UP5];x-x,1712-1712[BULt]	(((((((((((((((.(((...&...)))-)))))))))))))))	AAAAUGGAAGUUGUUCGGCAAC&CAAGUU-AGCAACUUCUAUUUU	2	0.982920744291004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN8660_c0_g1_1708_TPlot.pdf
TRINITY_DN8660_c0_g1:2008	si_a636	TRINITY_DN8660_c0_g1	1997	2016	2008	-26.30	-17.30	0.657794676806084	11	1-8,2016-2009;11-17,2007-2001	9-10,2008-2008[AILq];18-21,2000-1997[UP3]	....(((((((.-((((((((&))))))))..)))))))....	GAAGACUCAAGU-GGUCGACA&UGUCGAUUUUUUUGAGUAAUA	3	0.999999999782322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN8660_c0_g1_2008_TPlot.pdf
TRINITY_DN8662_c0_g2:209	si_a507	TRINITY_DN8662_c0_g2	199	218	209	-34.90	-24.30	0.696275071633238	7	3-14,216-205;16-19,204-201	1-2,218-217[UP5];15-15,x-x[BULq];20-21,200-199[UP3]	..((((-((((((((((((..&..)))))))))))).))))..	ACUACA-UCCAAGGAAGGCAG&UCGUCUUCCUUGGAAUGUAAG	0	0.0344146606019428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a507_TRINITY_DN8662_c0_g2_209_TPlot.pdf
TRINITY_DN8662_c0_g2:210	si_a506	TRINITY_DN8662_c0_g2	200	219	210	-33.40	-24.30	0.727544910179641	8	4-15,216-205;17-20,204-201	1-3,219-217[UP5];16-16,x-x[BULq];21-21,200-200[UP3]	.((((-((((((((((((...&...)))))))))))).)))).	CUACA-UCCAAGGAAGGCAGC&UUCGUCUUCCUUGGAAUGUAA	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN8662_c0_g2_210_TPlot.pdf
TRINITY_DN8662_c0_g2:211	si_a505	TRINITY_DN8662_c0_g2	201	220	211	-33.30	-24.00	0.720720720720721	9	5-16,216-205;18-21,204-201	1-4,220-217[UP5];17-17,x-x[BULq]	((((-((((((((((((....&....)))))))))))).))))	UACA-UCCAAGGAAGGCAGCA&UUUCGUCUUCCUUGGAAUGUA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN8662_c0_g2_211_TPlot.pdf
TRINITY_DN8662_c0_g2:213	si_a503	TRINITY_DN8662_c0_g2	203	222	213	-32.10	-21.40	0.666666666666667	13	7-18,216-205;20-21,204-203	1-6,222-217[UP5];19-19,x-x[BULq]	((-((((((((((((......&......)))))))))))).))	CA-UCCAAGGAAGGCAGCAGG&UUUUUCGUCUUCCUUGGAAUG	4	0.999999960642865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN8662_c0_g2_213_TPlot.pdf
TRINITY_DN8662_c0_g2:388	si_a71	TRINITY_DN8662_c0_g2	377	396	388	-23.30	-15.50	0.665236051502146	9	1-7,396-390;9-17,389-381	8-8,x-x[BULq];18-21,380-377[UP3]	....(((((((((-(((((((&))))))).)))))))))....	UAACGAGGAACAA-UUGGAGG&CUUUCAAAUUGUUUUUCAUUA	2	0.999999661262428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN8662_c0_g2_388_TPlot.pdf
TRINITY_DN8662_c0_g2:390	si_a69	TRINITY_DN8662_c0_g2	379	398	390	-24.00	-15.80	0.658333333333333	9	2-9,397-390;11-19,389-381	1-1,398-398[UP5];10-10,x-x[BULq];20-21,380-379[UP3]	..(((((((((-((((((((.&.)))))))).)))))))))..	ACGAGGAACAA-UUGGAGGGC&UUCUUUCAAAUUGUUUUUCAU	3	0.99999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8662_c0_g2_390_TPlot.pdf
TRINITY_DN8662_c0_g2:391	si_a68	TRINITY_DN8662_c0_g2	380	401	391	-25.40	-17.00	0.669291338582677	8	1-3,401-399;4-8,397-393;10-20,391-381	x-x,398-398[BULt];9-9,392-392[SIL];21-21,380-380[UP3]	.(((((((((((.(((((.(((&)))-))))).))))))))))).	CGAGGAACAAUUGGAGGGCAAG&CUU-CUUUCAAAUUGUUUUUCA	2	0.999999772545795	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8662_c0_g2_391_TPlot.pdf
TRINITY_DN8662_c0_g2:392	si_a67	TRINITY_DN8662_c0_g2	381	402	392	-27.20	-18.40	0.676470588235294	7.5	1-4,402-399;5-9,397-393;11-21,391-381	x-x,398-398[BULt];10-10,392-392[SIL]	(((((((((((.(((((.((((&))))-))))).)))))))))))	GAGGAACAAUUGGAGGGCAAGU&GCUU-CUUUCAAAUUGUUUUUC	4	0.999999996762013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8662_c0_g2_392_TPlot.pdf
TRINITY_DN8662_c1_g1:287	si_a333	TRINITY_DN8662_c1_g1	274	296	287	-30.60	-20.00	0.65359477124183	9.5	1-13,296-284;14-17,281-278	x-x,283-282[BULt];18-21,277-274[UP3]	....((((..(((((((((((((&)))))))))))))--))))....	UCAACGGGUAACGGGGAAUAAGG&UUUUAUUCCUUGU--CCCGAAAA	3	0.999996237632989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN8662_c1_g1_287_TPlot.pdf
TRINITY_DN8662_c1_g1:290	si_a330	TRINITY_DN8662_c1_g1	277	299	290	-30.50	-20.50	0.672131147540984	10	3-16,297-284;17-20,281-278	1-2,299-298[UP5];x-x,283-282[BULt];21-21,277-277[UP3]	.((((..((((((((((((((..&..))))))))))))))--)))).	ACGGGUAACGGGGAAUAAGGGUU&UUUUUUUAUUCCUUGU--CCCGA	3	0.999982827008927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN8662_c1_g1_290_TPlot.pdf
TRINITY_DN8662_c1_g1:291	si_a329	TRINITY_DN8662_c1_g1	278	300	291	-29.60	-20.50	0.692567567567568	11	4-17,297-284;18-21,281-278	1-3,300-298[UP5];x-x,283-282[BULt]	((((..((((((((((((((...&...))))))))))))))--))))	CGGGUAACGGGGAAUAAGGGUUC&AUUUUUUUAUUCCUUGU--CCCG	2	0.993367662545122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN8662_c1_g1_291_TPlot.pdf
TRINITY_DN8662_c1_g1:310	si_s897	TRINITY_DN8662_c1_g1	299	319	310	-31.30	-21.30	0.680511182108626	11	1-13,319-307	14-21,306-299[UP3]	........(((((((((((((&)))))))))))))........	UCGAUUCCGGAGAGGGAGCCU&AGGCUUUCUCUUCAAUUUCAA	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN8662_c1_g1_310_TPlot.pdf
TRINITY_DN8662_c1_g1:317	si_s890	TRINITY_DN8662_c1_g1	306	326	317	-29.50	-21.80	0.738983050847458	14.5	7-20,320-307	1-6,326-321[UP5];21-21,306-306[UP3]	.((((((((((((((......&......)))))))))))))).	CGGAGAGGGAGCCUGAGAAAC&AAUAAAUAGGCUUUCUCUUCA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN8662_c1_g1_317_TPlot.pdf
TRINITY_DN8662_c1_g1:320	si_s887	TRINITY_DN8662_c1_g1	309	329	320	-26.80	-17.70	0.66044776119403	19	10-21,320-309	1-9,329-321[UP5]	((((((((((((.........&.........))))))))))))	AGAGGGAGCCUGAGAAACGGC&AAAAAUAAAUAGGCUUUCUCU	4	0.99922519454297	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s887_TRINITY_DN8662_c1_g1_320_TPlot.pdf
TRINITY_DN8662_c1_g1:321	si_a498	TRINITY_DN8662_c1_g1	309	330	321	-33.50	-21.80	0.650746268656716	9	2-12,329-319;14-20,316-310	1-1,330-330[UP5];13-13,318-317[AILt];21-21,309-309[UP3]	.(((((((..(((((((((((.&.)))))))))))-.))))))).	AGAGGGAGCCUGAGAAACGGCU&UGUCGUUUUUCG-UCUUCCUUG	2	0.999999999931127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN8662_c1_g1_321_TPlot.pdf
TRINITY_DN8669_c0_g1:2191	si_s67	TRINITY_DN8669_c0_g1	2180	2200	2191	-25.60	-17.40	0.6796875	10	4-19,2197-2182	1-3,2200-2198[UP5];20-21,2181-2180[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCGAAAAGGAAUGGAGGUCUC&GCAACUUCUAUUUUUUUUCUU	4	0.999999996258643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8669_c0_g1_2191_TPlot.pdf
TRINITY_DN8669_c0_g1:291	si_a470	TRINITY_DN8669_c0_g1	280	300	291	-21.30	-14.00	0.657276995305164	9.5	1-15,300-286	16-21,285-280[UP3]	......(((((((((((((((&)))))))))))))))......	GGAGGAAGUGAUUGCGUAUUA&UAAUAUGUAAUUAUUGUUAUA	3	0.999999559920985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN8669_c0_g1_291_TPlot.pdf
TRINITY_DN8669_c0_g1:292	si_a469	TRINITY_DN8669_c0_g1	281	301	292	-21.10	-14.00	0.663507109004739	9	2-16,300-286	1-1,301-301[UP5];17-21,285-281[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAGGAAGUGAUUGCGUAUUAG&AUAAUAUGUAAUUAUUGUUAU	4	0.999997750238143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN8669_c0_g1_292_TPlot.pdf
TRINITY_DN8669_c0_g1:294	si_a467	TRINITY_DN8669_c0_g1	283	303	294	-21.10	-14.00	0.663507109004739	11	4-18,300-286	1-3,303-301[UP5];19-21,285-283[UP3]	...(((((((((((((((...&...)))))))))))))))...	GGAAGUGAUUGCGUAUUAGUG&AUAUAAUAUGUAAUUAUUGUU	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN8669_c0_g1_294_TPlot.pdf
TRINITY_DN8669_c0_g1:295	si_a466	TRINITY_DN8669_c0_g1	284	304	295	-21.50	-14.00	0.651162790697674	12	5-19,300-286	1-4,304-301[UP5];20-21,285-284[UP3]	..(((((((((((((((....&....)))))))))))))))..	GAAGUGAUUGCGUAUUAGUGC&UAUAUAAUAUGUAAUUAUUGU	2	0.983131997875692	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a466_TRINITY_DN8669_c0_g1_295_TPlot.pdf
TRINITY_DN8669_c0_g1:296	si_a465	TRINITY_DN8669_c0_g1	285	305	296	-20.90	-14.00	0.669856459330144	12.5	6-20,300-286	1-5,305-301[UP5];21-21,285-285[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AAGUGAUUGCGUAUUAGUGCU&AUAUAUAAUAUGUAAUUAUUG	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a465_TRINITY_DN8669_c0_g1_296_TPlot.pdf
TRINITY_DN8669_c0_g1:297	si_a464	TRINITY_DN8669_c0_g1	286	306	297	-19.60	-13.60	0.693877551020408	13.5	7-21,300-286	1-6,306-301[UP5]	(((((((((((((((......&......)))))))))))))))	AGUGAUUGCGUAUUAGUGCUA&UAUAUAUAAUAUGUAAUUAUU	2	0.966134296826891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN8669_c0_g1_297_TPlot.pdf
TRINITY_DN8669_c0_g1:332	si_s89	TRINITY_DN8669_c0_g1	321	341	332	-35.30	-23.50	0.6657223796034	7	1-8,341-334;10-18,332-324	9-9,333-333[SIL];19-21,323-321[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	GCUGGCGGAGAACAGGAAAGG&CCUUUCUUCUUCUUCGCUUCG	2	0.999999997579184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8669_c0_g1_332_TPlot.pdf
TRINITY_DN8669_c0_g1:333	si_s88	TRINITY_DN8669_c0_g1	322	342	333	-34.80	-24.90	0.71551724137931	6	1-9,342-334;11-19,332-324	10-10,333-333[SIL];20-21,323-322[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	CUGGCGGAGAACAGGAAAGGA&UCCUUUCUUCUUCUUCGCUUC	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN8669_c0_g1_333_TPlot.pdf
TRINITY_DN8669_c0_g1:334	si_s87	TRINITY_DN8669_c0_g1	323	343	334	-32.90	-25.10	0.762917933130699	6	2-10,342-334;12-20,332-324	1-1,343-343[UP5];11-11,333-333[SIL];21-21,323-323[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	UGGCGGAGAACAGGAAAGGAU&UUCCUUUCUUCUUCUUCGCUU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8669_c0_g1_334_TPlot.pdf
TRINITY_DN8669_c0_g1:335	si_s86	TRINITY_DN8669_c0_g1	324	344	335	-32.90	-25.10	0.762917933130699	7	3-11,342-334;13-21,332-324	1-2,344-343[UP5];12-12,333-333[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GGCGGAGAACAGGAAAGGAUG&UUUCCUUUCUUCUUCUUCGCU	2	0.968571161233685	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN8669_c0_g1_335_TPlot.pdf
TRINITY_DN8669_c0_g1:336	si_s85	TRINITY_DN8669_c0_g1	325	346	336	-33.80	-25.30	0.748520710059172	5.5	1-3,346-344;4-12,342-334;14-21,332-325	x-x,343-343[BULt];13-13,333-333[SIL]	((((((((.(((((((((.(((&)))-))))))))).))))))))	GCGGAGAACAGGAAAGGAUGAG&CUU-UCCUUUCUUCUUCUUCGC	4	0.998943995885992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8669_c0_g1_336_TPlot.pdf
TRINITY_DN8669_c0_g1:337	si_s84	TRINITY_DN8669_c0_g1	326	347	337	-32.30	-22.20	0.687306501547988	6	1-4,347-344;5-13,342-334;15-21,332-326	x-x,343-343[BULt];14-14,333-333[SIL]	(((((((.(((((((((.((((&))))-))))))))).)))))))	CGGAGAACAGGAAAGGAUGAGG&UCUU-UCCUUUCUUCUUCUUCG	3	0.999999999999962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8669_c0_g1_337_TPlot.pdf
TRINITY_DN8669_c0_g1:338	si_s78	TRINITY_DN8669_c0_g1	326	347	338	-26.20	-18.00	0.687022900763359	8	1-4,347-344;6-14,342-334;15-20,332-327	5-5,343-343[SIL];x-x,333-333[BULt];21-21,326-326[UP3]	.((((((.(((((((((.((((&)))).)))))))))-)))))).	CGGAGAACAGGAAAGGAUGAGG&UUUUUUUCUUUCCU-UUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8669_c0_g1_338_TPlot.pdf
TRINITY_DN8669_c0_g1:339	si_s77	TRINITY_DN8669_c0_g1	327	349	339	-25.50	-18.10	0.709803921568627	8.5	1-6,349-344;7-15,342-334;16-21,332-327	x-x,343-343[BULt];x-x,333-333[BULt]	((((((.(((((((((.((((((&))))))-)))))))))-))))))	GGAGAACAGGAAAGGAUGAGGGA&UUUUUU-UUCUUUCCU-UUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8669_c0_g1_339_TPlot.pdf
TRINITY_DN8669_c0_g1:340	si_s76	TRINITY_DN8669_c0_g1	328	350	340	-23.60	-15.70	0.665254237288135	9.5	2-7,349-344;8-16,342-334;17-21,332-328	1-1,350-350[UP5];x-x,343-343[BULt];x-x,333-333[BULt]	(((((.(((((((((.((((((.&.))))))-)))))))))-)))))	GAGAACAGGAAAGGAUGAGGGAA&AUUUUUU-UUCUUUCCU-UUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8669_c0_g1_340_TPlot.pdf
TRINITY_DN8669_c0_g1:341	si_s80	TRINITY_DN8669_c0_g1	327	351	341	-28.20	-18.90	0.670212765957447	10	2-8,350-344;9-16,342-335;17-21,331-327	1-1,351-351[UP5];x-x,343-343[BULt];x-x,334-332[BULt]	(((((...((((((((.(((((((.&.)))))))-))))))))---)))))	GGAGAACAGGAAAGGAUGAGGGAAU&UUUUUCUU-UCCUUUCU---UCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8669_c0_g1_341_TPlot.pdf
TRINITY_DN866_c0_g1:1594	si_a648	TRINITY_DN866_c0_g1	1583	1604	1594	-31.10	-21.40	0.688102893890675	8	1-3,1604-1602;4-10,1600-1594;12-21,1592-1583	x-x,1601-1601[BULt];11-11,1593-1593[SIL]	((((((((((.(((((((.(((&)))-))))))).))))))))))	CGUUUCCUGGAAUGUUGCGUCA&UGA-GUAAUAUAUCGGGAAAUG	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN866_c0_g1_1594_TPlot.pdf
TRINITY_DN866_c0_g1:1946	si_a593	TRINITY_DN866_c0_g1	1935	1955	1946	-32.90	-22.20	0.674772036474164	11	5-19,1951-1937	1-4,1955-1952[UP5];20-21,1936-1935[UP3]	..(((((((((((((((....&....)))))))))))))))..	AGGUGAAGAUUCUGUCUACGA&AGAAGGACAGAAUUUUCGCAA	4	0.787364729743826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a593_TRINITY_DN866_c0_g1_1946_TPlot.pdf
TRINITY_DN866_c0_g1:2206	si_s897	TRINITY_DN866_c0_g1	2194	2215	2206	-31.30	-21.10	0.674121405750799	8.5	1-10,2215-2206;11-19,2204-2196	x-x,2205-2205[BULt];20-21,2195-2194[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	CCGAGAUUGAACGAGAGGGUUU&AGGCUUUCUC-UUCAAUUUCAA	4	0.999960349154403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN866_c0_g1_2206_TPlot.pdf
TRINITY_DN866_c0_g1:2780	si_a145	TRINITY_DN866_c0_g1	2769	2789	2780	-28.10	-19.30	0.686832740213523	9.5	4-11,2786-2779;13-15,2777-2775;17-21,2773-2769	1-3,2789-2787[UP5];12-12,2778-2778[SIL];16-16,2774-2774[SIL]	(((((.(((.((((((((...&...)))))))).))).)))))	ACCUUUAGAGGACAACGAAGC&UAAUCGUUGUUGUUUUAAGGU	3	0.996683246444043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN866_c0_g1_2780_TPlot.pdf
TRINITY_DN866_c0_g1:2781	si_a144	TRINITY_DN866_c0_g1	2770	2790	2781	-27.40	-18.00	0.656934306569343	10.5	5-12,2786-2779;14-16,2777-2775;18-21,2773-2770	1-4,2790-2787[UP5];13-13,2778-2778[SIL];17-17,2774-2774[SIL]	((((.(((.((((((((....&....)))))))).))).))))	CCUUUAGAGGACAACGAAGCG&UUAAUCGUUGUUGUUUUAAGG	3	0.999947712872037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN866_c0_g1_2781_TPlot.pdf
TRINITY_DN866_c0_g1:3861	si_a390	TRINITY_DN866_c0_g1	3849	3870	3861	-24.80	-17.20	0.693548387096774	6.5	1-5,3870-3866;8-13,3863-3858;14-21,3856-3849	6-7,3865-3864[SIL];x-x,3857-3857[BULt]	((((((((.((((((..(((((&)))))..))))))-))))))))	ACAAUUCUGGUAUUUGGAAUUC&GAAUUAAGAAUAU-AGAAUUGU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a390_TRINITY_DN866_c0_g1_3861_TPlot.pdf
TRINITY_DN866_c0_g1:3892	si_s808	TRINITY_DN866_c0_g1	3881	3901	3892	-28.60	-21.40	0.748251748251748	6	1-15,3901-3887	16-21,3886-3881[UP3]	......(((((((((((((((&)))))))))))))))......	UCCUUCAAAGGUAACGAAGAU&AUCUUCGUUACCUUUUCUUAA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN866_c0_g1_3892_TPlot.pdf
TRINITY_DN866_c0_g1:4262	si_a369	TRINITY_DN866_c0_g1	4248	4272	4262	-30.00	-20.30	0.676666666666667	9	1-6,4272-4267;7-11,4265-4261;12-20,4257-4249	x-x,4266-4266[BULt];x-x,4260-4258[BULt];21-21,4248-4248[UP3]	.(((((((((...(((((.((((((&))))))-)))))---))))))))).	AAAAUCAUUUUCGUUGAUGCCGAUC&GAUCGG-AUCAA---AAAUGAUUUC	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN866_c0_g1_4262_TPlot.pdf
TRINITY_DN866_c0_g1:4264	si_a367	TRINITY_DN866_c0_g1	4250	4274	4264	-28.80	-20.80	0.722222222222222	5.5	1-8,4274-4267;9-13,4265-4261;14-21,4257-4250	x-x,4266-4266[BULt];x-x,4260-4258[BULt]	((((((((...(((((.((((((((&))))))))-)))))---))))))))	AAUCAUUUUCGUUGAUGCCGAUCAG&UUGAUCGG-AUCAA---AAAUGAUU	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a367_TRINITY_DN866_c0_g1_4264_TPlot.pdf
TRINITY_DN866_c0_g1:4265	si_a366	TRINITY_DN866_c0_g1	4251	4275	4265	-28.80	-20.40	0.708333333333333	6.5	1-9,4275-4267;10-14,4265-4261;15-21,4257-4251	x-x,4266-4266[BULt];x-x,4260-4258[BULt]	(((((((...(((((.(((((((((&)))))))))-)))))---)))))))	AUCAUUUUCGUUGAUGCCGAUCAGG&UUUGAUCGG-AUCAA---AAAUGAU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a366_TRINITY_DN866_c0_g1_4265_TPlot.pdf
TRINITY_DN866_c0_g1:4393	si_a70	TRINITY_DN866_c0_g1	4382	4404	4393	-23.90	-16.30	0.682008368200837	12	1-7,4404-4398;8-18,4395-4385	x-x,4397-4396[BULt];19-21,4384-4382[UP3]	...(((((((((((..(((((((&)))))))--)))))))))))...	CUGGAAGAGCGGUUACUGGAGGA&UCUUUCA--AAUUGUUUUUCAUU	4	0.999999981280751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN866_c0_g1_4393_TPlot.pdf
TRINITY_DN866_c0_g1:4394	si_a69	TRINITY_DN866_c0_g1	4383	4405	4394	-24.00	-17.00	0.708333333333333	11	1-8,4405-4398;9-19,4395-4385	x-x,4397-4396[BULt];20-21,4384-4383[UP3]	..(((((((((((..((((((((&))))))))--)))))))))))..	UGGAAGAGCGGUUACUGGAGGAA&UUCUUUCA--AAUUGUUUUUCAU	3	0.999988071286844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN866_c0_g1_4394_TPlot.pdf
TRINITY_DN866_c0_g1:4395	si_a68	TRINITY_DN866_c0_g1	4384	4406	4395	-25.40	-17.10	0.673228346456693	10.5	2-9,4405-4398;10-20,4395-4385	1-1,4406-4406[UP5];x-x,4397-4396[BULt];21-21,4384-4384[UP3]	.(((((((((((..((((((((.&.))))))))--))))))))))).	GGAAGAGCGGUUACUGGAGGAAC&CUUCUUUCA--AAUUGUUUUUCA	3	0.999999999939196	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN866_c0_g1_4395_TPlot.pdf
TRINITY_DN866_c0_g1:4468	si_s805	TRINITY_DN866_c0_g1	4456	4477	4468	-28.60	-19.00	0.664335664335664	10.5	2-9,4476-4469;11-11,4467-4467;13-20,4464-4457	1-1,4477-4477[UP5];10-10,4468-4468[SIL];12-12,4466-4465[AILt];21-21,4456-4456[UP3]	.((((((((..(.((((((((.&.)))))))).)-.)))))))).	UGAAGAGGUUUAGGAGGAUAGC&UUUAUCUUCGU-UACCUUUUCU	4	0.999999999977159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN866_c0_g1_4468_TPlot.pdf
TRINITY_DN866_c0_g1:4471	si_s852	TRINITY_DN866_c0_g1	4460	4484	4471	-41.90	-27.58	0.658233890214797	14.5	1-2,4484-4483;4-8,4481-4477;10-20,4471-4461	3-3,4482-4482[SIL];9-9,4476-4472[AILt];21-21,4460-4460[UP3]	.(((((((((((.....(((((.((&)).)))))----.))))))))))).	GAGGUUUAGGAGGAUAGCGGCUGGC&GCGAGUCG----ACUCCUAGACCUA	3	0.867925101712672	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s852_TRINITY_DN866_c0_g1_4471_TPlot.pdf
TRINITY_DN866_c0_g1:4644	si_s888	TRINITY_DN866_c0_g1	4642	4653	4644	-26.80	-17.90	0.667910447761194	1	11-21,4652-4642	10-10,4653-4653[SIL]	(((((((((((.&.)))))))))))	AGGAGAGAGCCA&AAAAUAAAUAGG	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN866_c0_g1_4644_TPlot.pdf
TRINITY_DN866_c0_g1:4654	si_s73	TRINITY_DN866_c0_g1	4640	4663	4654	-24.00	-15.90	0.6625	11.5	1-5,4663-4659;8-11,4656-4653;12-21,4649-4640	6-7,4658-4657[SIL];x-x,4652-4650[BULt]	((((((((((...((((..(((((&)))))..))))---))))))))))	AAAGGAGAGAGCCAAGACUAUAGA&UCUAUUUUUUU---UCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN866_c0_g1_4654_TPlot.pdf
TRINITY_DN866_c0_g1:4826	si_s89	TRINITY_DN866_c0_g1	4814	4835	4826	-35.30	-23.82	0.674787535410765	6	1-12,4835-4824;16-21,4819-4814	13-15,4823-4820[AILt]	((((((....((((((((((((&))))))))))))-...))))))	UGAAGUUAGUGAAGAAGAAAGG&CCUUUCUUCUUC-UUCGCUUCG	3	0.999999999991466	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN866_c0_g1_4826_TPlot.pdf
TRINITY_DN866_c0_g1:4828	si_s87	TRINITY_DN866_c0_g1	4816	4837	4828	-32.90	-21.62	0.657142857142857	5.5	2-14,4836-4824;18-21,4819-4816	1-1,4837-4837[UP5];15-17,4823-4820[AILt]	((((....(((((((((((((.&.)))))))))))))-...))))	AAGUUAGUGAAGAAGAAAGGAC&UUCCUUUCUUCUUC-UUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN866_c0_g1_4828_TPlot.pdf
TRINITY_DN866_c0_g1:4832	si_s83	TRINITY_DN866_c0_g1	4821	4841	4832	-30.90	-21.60	0.699029126213592	8	2-3,4840-4839;6-18,4836-4824	1-1,4841-4841[UP5];4-5,4838-4837[SIL];19-21,4823-4821[UP3]	...(((((((((((((..((.&.))..)))))))))))))...	AGUGAAGAAGAAAGGACUGAU&UUCUUUCCUUUCUUCUUCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN866_c0_g1_4832_TPlot.pdf
TRINITY_DN866_c0_g1:4833	si_s82	TRINITY_DN866_c0_g1	4822	4842	4833	-28.90	-21.60	0.747404844290658	9	3-4,4840-4839;7-19,4836-4824	1-2,4842-4841[UP5];5-6,4838-4837[SIL];20-21,4823-4822[UP3]	..(((((((((((((..((..&..))..)))))))))))))..	GUGAAGAAGAAAGGACUGAUA&UUUCUUUCCUUUCUUCUUCUU	4	0.999999998846462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN866_c0_g1_4833_TPlot.pdf
TRINITY_DN866_c0_g1:4834	si_s81	TRINITY_DN866_c0_g1	4823	4843	4834	-28.90	-21.60	0.747404844290658	10	4-5,4840-4839;8-20,4836-4824	1-3,4843-4841[UP5];6-7,4838-4837[SIL];21-21,4823-4823[UP3]	.(((((((((((((..((...&...))..))))))))))))).	UGAAGAAGAAAGGACUGAUAU&UUUUCUUUCCUUUCUUCUUCU	3	0.999999996142996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN866_c0_g1_4834_TPlot.pdf
TRINITY_DN866_c0_g1:4837	si_s78	TRINITY_DN866_c0_g1	4826	4846	4837	-26.20	-17.30	0.66030534351145	15	7-8,4840-4839;11-21,4836-4826	1-6,4846-4841[UP5];9-10,4838-4837[SIL]	(((((((((((..((......&......))..)))))))))))	AGAAGAAAGGACUGAUAUACA&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN866_c0_g1_4837_TPlot.pdf
TRINITY_DN8676_c0_g1:10287	si_a70	TRINITY_DN8676_c0_g1	10276	10296	10287	-23.90	-16.00	0.669456066945607	12	1-6,10296-10291;9-18,10288-10279	7-8,10290-10289[SIL];19-21,10278-10276[UP3]	...((((((((((..((((((&))))))..))))))))))...	UUCGAGGGACAGUGGGGGAGG&UCUUUCAAAUUGUUUUUCAUU	3	0.999999999548851	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8676_c0_g1_10287_TPlot.pdf
TRINITY_DN8676_c0_g1:10323	si_a193	TRINITY_DN8676_c0_g1	10312	10339	10323	-30.90	-20.30	0.656957928802589	20.5	1-9,10339-10331;10-17,10323-10316	x-x,10330-10324[BULt];18-21,10315-10312[UP3]	....((((((((.......(((((((((&)))))))))-------))))))))....	UUAUUUGGUGGAGGGCGGUCAGGGAGAG&CUUUCCCUG-------UUCACUAAUAAA	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN8676_c0_g1_10323_TPlot.pdf
TRINITY_DN8676_c0_g1:10330	si_a69	TRINITY_DN8676_c0_g1	10319	10339	10330	-24.00	-16.60	0.691666666666667	11.5	2-7,10338-10333;10-21,10330-10319	1-1,10339-10339[UP5];8-9,10332-10331[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	GUGGAGGGCGGUCAGGGAGAG&UUCUUUCAAAUUGUUUUUCAU	3	0.999999718089584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8676_c0_g1_10330_TPlot.pdf
TRINITY_DN8676_c0_g1:7595	si_a148	TRINITY_DN8676_c0_g1	7588	7604	7595	-30.30	-19.80	0.653465346534653	7.5	1-11,7604-7594;16-20,7593-7589	12-15,x-x[BULq];21-21,7588-7588[UP3]	.(((((----(((((((((((&)))))))))))....))))).	AUGGCC----AACAACGACGA&UCGUUGUUGUUUUAAGGUCAA	3	0.999999973608088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN8676_c0_g1_7595_TPlot.pdf
TRINITY_DN8676_c0_g1:7791	si_a438	TRINITY_DN8676_c0_g1	7780	7800	7791	-31.70	-22.10	0.697160883280757	9	1-15,7800-7786	16-21,7785-7780[UP3]	......(((((((((((((((&)))))))))))))))......	UCCUUCCUCAUGUUCAAUGGA&UCCGUUGGAUAUGAGAUAAUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN8676_c0_g1_7791_TPlot.pdf
TRINITY_DN8676_c0_g1:7792	si_a437	TRINITY_DN8676_c0_g1	7781	7801	7792	-31.90	-22.10	0.692789968652038	9	2-16,7800-7786	1-1,7801-7801[UP5];17-21,7785-7781[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CCUUCCUCAUGUUCAAUGGAG&AUCCGUUGGAUAUGAGAUAAU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a437_TRINITY_DN8676_c0_g1_7792_TPlot.pdf
TRINITY_DN8676_c0_g1:7822	si_a816	TRINITY_DN8676_c0_g1	7811	7831	7822	-32.30	-22.20	0.687306501547988	4.5	1-8,7831-7824;10-13,7822-7819;15-20,7817-7812	9-9,7823-7823[SIL];14-14,7818-7818[SIL];21-21,7811-7811[UP3]	.((((((.((((.((((((((&)))))))).)))).)))))).	GCUUUCUCUUCUACUUCUUCG&CGAAGAAGAAGAAAGGAAAGA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a816_TRINITY_DN8676_c0_g1_7822_TPlot.pdf
TRINITY_DN8676_c0_g1:7823	si_a815	TRINITY_DN8676_c0_g1	7812	7832	7823	-33.80	-22.20	0.656804733727811	4.5	2-9,7831-7824;11-14,7822-7819;16-21,7817-7812	1-1,7832-7832[UP5];10-10,7823-7823[SIL];15-15,7818-7818[SIL]	((((((.((((.((((((((.&.)))))))).)))).))))))	CUUUCUCUUCUACUUCUUCGA&GCGAAGAAGAAGAAAGGAAAG	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a815_TRINITY_DN8676_c0_g1_7823_TPlot.pdf
TRINITY_DN8676_c0_g1:8131	si_s180	TRINITY_DN8676_c0_g1	8122	8140	8131	-35.30	-24.18	0.684985835694051	7.5	2-10,8139-8131;15-21,8128-8122	1-1,8140-8140[UP5];11-14,8130-8129[AILq]	(((((((..--(((((((((.&.)))))))))....)))))))	AUGAUCGCG--UCGGGCAUCA&AGAUGCCCGAGUAACGAUUAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s180_TRINITY_DN8676_c0_g1_8131_TPlot.pdf
TRINITY_DN8676_c0_g1:8132	si_s179	TRINITY_DN8676_c0_g1	8123	8141	8132	-35.10	-23.08	0.657549857549858	8.5	3-11,8139-8131;16-21,8128-8123	1-2,8141-8140[UP5];12-15,8130-8129[AILq]	((((((..--(((((((((..&..)))))))))....))))))	UGAUCGCG--UCGGGCAUCAA&AAGAUGCCCGAGUAACGAUUA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s179_TRINITY_DN8676_c0_g1_8132_TPlot.pdf
TRINITY_DN8683_c0_g1:2899	si_a773	TRINITY_DN8683_c0_g1	2888	2909	2899	-29.90	-19.60	0.65551839464883	9.5	2-5,2908-2905;8-19,2901-2890	1-1,2909-2909[UP5];6-7,2904-2902[AILt];20-21,2889-2888[UP3]	..((((((((((((...((((.&.))))-..))))))))))))..	GAGGAAGAGUUGAAAGAAAUCU&UGAUU-GAUUCAACUCUUCUAU	4	0.99426168552606	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a773_TRINITY_DN8683_c0_g1_2899_TPlot.pdf
TRINITY_DN8684_c0_g1:1488	si_s185	TRINITY_DN8684_c0_g1	1477	1497	1488	-33.30	-24.40	0.732732732732733	5.5	2-7,1496-1491;9-21,1489-1477	1-1,1497-1497[UP5];8-8,1490-1490[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	CCAGAAUAAUUGUAACUUGGA&CCCGAGUAACGAUUAUUUUGG	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s185_TRINITY_DN8684_c0_g1_1488_TPlot.pdf
TRINITY_DN8688_c0_g1:1032	si_a193	TRINITY_DN8688_c0_g1	1021	1041	1032	-30.90	-20.90	0.676375404530744	10	1-13,1041-1029	14-21,1028-1021[UP3]	........(((((((((((((&)))))))))))))........	AACGAGCUUGGACAGGGAGAG&CUUUCCCUGUUCACUAAUAAA	2	0.956018375488611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN8688_c0_g1_1032_TPlot.pdf
TRINITY_DN8688_c0_g1:1290	si_a759	TRINITY_DN8688_c0_g1	1279	1299	1290	-32.60	-23.80	0.730061349693252	7	1-6,1299-1294;8-20,1292-1280	7-7,1293-1293[SIL];21-21,1279-1279[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	ACAAUUAAGGGCCUCAAGGAG&CUCCUUUGGGUUUUUGAUUGA	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN8688_c0_g1_1290_TPlot.pdf
TRINITY_DN8688_c0_g1:1291	si_a758	TRINITY_DN8688_c0_g1	1280	1302	1291	-34.00	-25.30	0.744117647058824	7.5	1-4,1302-1299;5-9,1297-1293;10-21,1291-1280	x-x,1298-1298[BULt];x-x,1292-1292[BULt]	((((((((((((.(((((.((((&))))-)))))-))))))))))))	CAAUUAAGGGCCUCAAGGAGAGG&CCUC-CUUUG-GGUUUUUGAUUG	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN8688_c0_g1_1291_TPlot.pdf
TRINITY_DN8689_c0_g1:1041	si_a835	TRINITY_DN8689_c0_g1	1030	1051	1041	-26.00	-19.52	0.750769230769231	10	1-4,1051-1048;8-21,1043-1030	5-7,1047-1044[AILt]	((((((((((((((....((((&))))-...))))))))))))))	UAGCAGCUUCUGUUGAAGUUUU&GAAA-AAAAAUAGAAGUUGCUA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a835_TRINITY_DN8689_c0_g1_1041_TPlot.pdf
TRINITY_DN8689_c0_g1:1316	si_a72	TRINITY_DN8689_c0_g1	1305	1325	1316	-21.90	-14.50	0.662100456621005	7	2-7,1324-1319;9-13,1317-1313;15-21,1311-1305	1-1,1325-1325[UP5];8-8,1318-1318[SIL];14-14,1312-1312[SIL]	(((((((.(((((.((((((.&.)))))).))))).)))))))	AUGAUGGUAAGCAUUUUGAGU&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999999911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN8689_c0_g1_1316_TPlot.pdf
TRINITY_DN8690_c0_g1:2584	si_a331	TRINITY_DN8690_c0_g1	2573	2593	2584	-30.60	-25.80	0.843137254901961	6	1-4,2593-2590;7-20,2587-2574	5-6,2589-2588[SIL];21-21,2573-2573[UP3]	.((((((((((((((..((((&))))..)))))))))))))).	AUCGGGGCGAGGAAUUUAAAA&UUUUUUAUUCCUUGUCCCGAA	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN8690_c0_g1_2584_TPlot.pdf
TRINITY_DN8690_c0_g1:3645	si_a897	TRINITY_DN8690_c0_g1	3634	3654	3645	-21.20	-15.10	0.712264150943396	8	1-4,3654-3651;7-18,3648-3637	5-6,3650-3649[SIL];19-21,3636-3634[UP3]	...((((((((((((..((((&))))..))))))))))))...	GCAGUGUUACUUAUUUGUACU&AGUAAUAAUAAGUAAUAUAAA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN8690_c0_g1_3645_TPlot.pdf
TRINITY_DN8690_c0_g1:4659	si_a897	TRINITY_DN8690_c0_g1	4648	4668	4659	-21.20	-14.50	0.683962264150943	9	2-4,4667-4665;7-18,4662-4651	1-1,4668-4668[UP5];5-6,4664-4663[SIL];19-21,4650-4648[UP3]	...((((((((((((..(((.&.)))..))))))))))))...	GUAGUGUUACUUAUUUGUACA&AGUAAUAAUAAGUAAUAUAAA	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN8690_c0_g1_4659_TPlot.pdf
TRINITY_DN8693_c0_g1:144	si_s8	TRINITY_DN8693_c0_g1	133	152	144	-21.30	-15.50	0.727699530516432	8.5	1-6,152-147;8-18,146-136	7-7,x-x[BULq];19-21,135-133[UP3]	...(((((((((((-((((((&)))))).)))))))))))...	GUGGUAGUAGUAGU-AGUAGU&AUUACUUAUUAUUACUAUAUU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN8693_c0_g1_144_TPlot.pdf
TRINITY_DN8693_c0_g1:474	si_a446	TRINITY_DN8693_c0_g1	463	483	474	-25.50	-17.40	0.68235294117647	11	5-21,479-463	1-4,483-480[UP5]	(((((((((((((((((....&....)))))))))))))))))	AUGGCGAUAAUUGUUUCGAGU&AUAUGAGAUAAUUGUUGUUAU	4	0.994019822560894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN8693_c0_g1_474_TPlot.pdf
TRINITY_DN8694_c0_g1:2283	si_a410	TRINITY_DN8694_c0_g1	2272	2292	2283	-17.80	-11.70	0.657303370786517	11	4-18,2289-2275	1-3,2292-2290[UP5];19-21,2274-2272[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUAAUUUAAGUGUAAAUAUUU&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8694_c0_g1_2283_TPlot.pdf
TRINITY_DN8699_c0_g1:935	si_a781	TRINITY_DN8699_c0_g1	920	944	935	-27.40	-18.02	0.657664233576642	15	1-11,944-934;16-21,925-920	12-15,933-926[AILt]	((((((........(((((((((((&)))))))))))----....))))))	AUAGAAUUACUAACGGAGGAGUUGA&UCAACUCUUCU----AUUUUUCUAU	4	0.999999540968882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN8699_c0_g1_935_TPlot.pdf
TRINITY_DN869_c0_g1:1275	si_a25	TRINITY_DN869_c0_g1	1258	1284	1275	-26.50	-17.50	0.660377358490566	12	2-16,1283-1269;17-21,1262-1258	1-1,1284-1284[UP5];x-x,1268-1263[BULt]	(((((......(((((((((((((((.&.)))))))))))))))------)))))	GGUUUAAGAAGUGGAACUGAAGGUAGC&UUUAUUUUUAGUUCUA------AGACC	3	0.999452677556744	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN869_c0_g1_1275_TPlot.pdf
TRINITY_DN869_c0_g1:1281	si_s808	TRINITY_DN869_c0_g1	1261	1290	1281	-28.60	-21.00	0.734265734265734	13.5	1-15,1290-1276;16-21,1266-1261	x-x,1275-1267[BULt]	((((((.........(((((((((((((((&)))))))))))))))---------))))))	UUAAGAAGUGGAACUGAAGGUAGCGGGGGU&AUCUUCGUUACCUUU---------UCUUAA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN869_c0_g1_1281_TPlot.pdf
TRINITY_DN869_c0_g1:2724	si_a71	TRINITY_DN869_c0_g1	2713	2733	2724	-23.30	-15.80	0.678111587982833	9	1-6,2733-2728;9-19,2725-2715	7-8,2727-2726[SIL];20-21,2714-2713[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	UCAUGAAGGGCAAACUGAAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999999997153094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN869_c0_g1_2724_TPlot.pdf
TRINITY_DN869_c0_g1:2725	si_a70	TRINITY_DN869_c0_g1	2714	2734	2725	-23.90	-15.80	0.661087866108787	8.5	2-7,2733-2728;10-20,2725-2715	1-1,2734-2734[UP5];8-9,2727-2726[SIL];21-21,2714-2714[UP3]	.(((((((((((..((((((.&.))))))..))))))))))).	CAUGAAGGGCAAACUGAAGGU&UCUUUCAAAUUGUUUUUCAUU	4	0.999999999996852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN869_c0_g1_2725_TPlot.pdf
TRINITY_DN869_c0_g1:2726	si_a69	TRINITY_DN869_c0_g1	2715	2735	2726	-24.00	-15.80	0.658333333333333	9.5	3-8,2733-2728;11-21,2725-2715	1-2,2735-2734[UP5];9-10,2727-2726[SIL]	(((((((((((..((((((..&..))))))..)))))))))))	AUGAAGGGCAAACUGAAGGUC&UUCUUUCAAAUUGUUUUUCAU	3	0.999999999999537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN869_c0_g1_2726_TPlot.pdf
TRINITY_DN869_c0_g1:445	si_a786	TRINITY_DN869_c0_g1	434	454	445	-26.60	-18.58	0.698496240601504	10	1-5,454-450;9-21,446-434	6-8,449-447[SIL]	(((((((((((((...(((((&)))))...)))))))))))))	GGGAGGUGGAAGACAUGGAGA&UCUUCUAUUUUUCUAUUUUCC	4	0.99999992536643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN869_c0_g1_445_TPlot.pdf
TRINITY_DN86_c0_g1:772	si_a641	TRINITY_DN86_c0_g1	757	781	772	-23.60	-15.46	0.655084745762712	13	1-12,781-770;15-20,763-758	13-14,769-764[AILt];21-21,757-757[UP3]	.((((((......((((((((((((&))))))))))))----..)))))).	GGGUAUGGGUAGGACUCAAAGAAAU&AUUUUUUUGAGU----AAUAUAUCG	4	0.999997556591953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN86_c0_g1_772_TPlot.pdf
TRINITY_DN8700_c0_g1:195	si_a405	TRINITY_DN8700_c0_g1	184	204	195	-19.80	-13.20	0.666666666666667	7	2-13,203-192;16-19,189-186	1-1,204-204[UP5];14-15,191-190[SIL];20-21,185-184[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	CGAAGUUGGAACAAAACAGUA&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN8700_c0_g1_195_TPlot.pdf
TRINITY_DN8700_c0_g1:39	si_a868	TRINITY_DN8700_c0_g1	28	48	39	-24.80	-16.86	0.679838709677419	7	1-10,48-39;15-21,34-28	11-14,38-35[SIL]	(((((((....((((((((((&))))))))))....)))))))	UGCAACUUGCACUUUAGUAAU&AUUAUUAAAGAUUUAGUUGCA	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a868_TRINITY_DN8700_c0_g1_39_TPlot.pdf
TRINITY_DN8701_c0_g1:1432	si_a790	TRINITY_DN8701_c0_g1	1421	1441	1432	-25.80	-19.00	0.736434108527132	6	1-11,1441-1431;13-17,1429-1425	12-12,1430-1430[SIL];18-21,1424-1421[UP3]	....(((((.(((((((((((&))))))))))).)))))....	CGUCGGAAAUUAGAAAAAUAG&CUAUUUUUCUAUUUUCCAAUC	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN8701_c0_g1_1432_TPlot.pdf
TRINITY_DN8701_c0_g1:1781	si_s823	TRINITY_DN8701_c0_g1	1770	1790	1781	-22.20	-14.74	0.663963963963964	6.5	1-11,1790-1780;17-21,1774-1770	12-16,1779-1775[SIL]	(((((.....(((((((((((&))))))))))).....)))))	AGUUGGAGAGCAUUAUUAAGA&UCUUAAUAAUGAAAAACAAUU	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s823_TRINITY_DN8701_c0_g1_1781_TPlot.pdf
TRINITY_DN8701_c0_g1:1782	si_s822	TRINITY_DN8701_c0_g1	1771	1791	1782	-22.30	-14.84	0.665470852017937	5.5	1-12,1791-1780;18-21,1774-1771	13-17,1779-1775[SIL]	((((.....((((((((((((&)))))))))))).....))))	GUUGGAGAGCAUUAUUAAGAA&UUCUUAAUAAUGAAAAACAAU	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN8701_c0_g1_1782_TPlot.pdf
TRINITY_DN8701_c0_g1:1784	si_s820	TRINITY_DN8701_c0_g1	1770	1793	1784	-22.10	-14.70	0.665158371040724	7	1-14,1793-1780;18-20,1773-1771	15-17,1779-1774[AILt];21-21,1770-1770[UP3]	.(((......((((((((((((((&))))))))))))))---...))).	AGUUGGAGAGCAUUAUUAAGAAAA&UUUUCUUAAUAAUG---AAAAACA	2	0.845401264946283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN8701_c0_g1_1784_TPlot.pdf
TRINITY_DN8705_c0_g1:2127	si_s803	TRINITY_DN8705_c0_g1	2116	2137	2127	-26.00	-17.30	0.665384615384615	12	1-8,2137-2130;10-18,2127-2119	9-9,2129-2128[AILt];19-21,2118-2116[UP3]	...(((((((((..((((((((&))))))))-.)))))))))...	CUUGGGUGAUGAUUGGUGAGAU&AUUUUAUC-UUCGUUACCUUUU	2	0.999999972923736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8705_c0_g1_2127_TPlot.pdf
TRINITY_DN8705_c0_g1:2227	si_a412	TRINITY_DN8705_c0_g1	2216	2236	2227	-18.30	-13.60	0.743169398907104	5	1-12,2236-2225;15-20,2222-2217	13-14,2224-2223[SIL];21-21,2216-2216[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	GAUUUAUGAAAAUAUGAACGA&UUGUUUAUAUUUAAAUAAAUA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN8705_c0_g1_2227_TPlot.pdf
TRINITY_DN8705_c0_g1:2336	si_a69	TRINITY_DN8705_c0_g1	2322	2345	2336	-24.00	-15.80	0.658333333333333	9.5	1-10,2345-2336;11-19,2332-2324	x-x,2335-2333[BULt];20-21,2323-2322[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	ACGAAAAAUAAAACUUUGGAAGAA&UUCUUUCAAA---UUGUUUUUCAU	4	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8705_c0_g1_2336_TPlot.pdf
TRINITY_DN8705_c0_g1:3037	si_a859	TRINITY_DN8705_c0_g1	3026	3046	3037	-25.00	-16.40	0.656	10	6-21,3041-3026	1-5,3046-3042[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUUUUGAUAAUUGGAACACU&UGAAAUCCAAUUAUUAAAGAU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a859_TRINITY_DN8705_c0_g1_3037_TPlot.pdf
TRINITY_DN870_c0_g1:823	si_a848	TRINITY_DN870_c0_g1	812	837	823	-31.30	-21.20	0.677316293929712	15	2-6,836-832;7-12,826-821;14-20,819-813	1-1,837-837[UP5];x-x,831-827[BULt];13-13,820-820[SIL];21-21,812-812[UP3]	.(((((((.((((((.....(((((.&.)))))-----)))))).))))))).	CUGGAUUUGGAGUUACACCUGCAGCA&AGUUGC-----UAACUUGAAAUCCAA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a848_TRINITY_DN870_c0_g1_823_TPlot.pdf
TRINITY_DN8711_c0_g1:1083	si_s74	TRINITY_DN8711_c0_g1	1069	1092	1083	-25.00	-16.50	0.66	11	1-12,1092-1081;16-21,1074-1069	13-15,1080-1075[AILt]	((((((......((((((((((((&))))))))))))---...))))))	GAAAGGCGCGCUGAAAAAGGAUAG&CUAUUUUUUUUC---UUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8711_c0_g1_1083_TPlot.pdf
TRINITY_DN8711_c0_g1:2000	si_s59	TRINITY_DN8711_c0_g1	1989	2010	2000	-29.20	-19.50	0.667808219178082	8.5	1-6,2010-2005;7-10,2003-2000;13-21,1997-1989	x-x,2004-2004[BULt];11-12,1999-1998[SIL]	(((((((((..((((.((((((&))))))-))))..)))))))))	AGAUGGAGGCGGUUAUACUUGA&UCAAGU-UAGCAACUUCUAUUU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN8711_c0_g1_2000_TPlot.pdf
TRINITY_DN8711_c0_g1:913	si_s362	TRINITY_DN8711_c0_g1	902	924	913	-34.70	-23.56	0.678962536023055	13.5	2-8,923-917;12-21,911-902	1-1,924-924[UP5];9-11,916-912[AILt]	((((((((((.....(((((((.&.)))))))--...))))))))))	GAGCGGUCGGCGGAUGAUCUGUC&AAUAGAUU--GAACCGAUCGCUC	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s362_TRINITY_DN8711_c0_g1_913_TPlot.pdf
TRINITY_DN8711_c0_g2:1905	si_s308	TRINITY_DN8711_c0_g2	1894	1914	1905	-32.80	-23.90	0.728658536585366	5.5	1-3,1914-1912;5-6,1910-1909;8-12,1907-1903;14-21,1901-1894	4-4,1911-1911[SIL];7-7,1908-1908[SIL];13-13,1902-1902[SIL]	((((((((.(((((.((.(((&))).)).))))).))))))))	GAGAAGGAGAGAAUGUUGGCA&UGCGAAAAUUCUGUCCUUCUU	2	0.392161436791928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s308_TRINITY_DN8711_c0_g2_1905_TPlot.pdf
TRINITY_DN8711_c0_g2:1906	si_s307	TRINITY_DN8711_c0_g2	1895	1915	1906	-32.90	-23.40	0.711246200607903	5	1-4,1915-1912;6-7,1910-1909;9-13,1907-1903;15-21,1901-1895	5-5,1911-1911[SIL];8-8,1908-1908[SIL];14-14,1902-1902[SIL]	(((((((.(((((.((.((((&)))).)).))))).)))))))	AGAAGGAGAGAAUGUUGGCAA&UUGCGAAAAUUCUGUCCUUCU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s307_TRINITY_DN8711_c0_g2_1906_TPlot.pdf
TRINITY_DN8716_c0_g1:1324	si_s617	TRINITY_DN8716_c0_g1	1313	1333	1324	-28.30	-18.60	0.657243816254417	14.5	7-10,1327-1324;12-21,1322-1313	1-6,1333-1328[UP5];11-11,1323-1323[SIL]	((((((((((.((((......&......)))).))))))))))	GAAAGAUCGCAUGGGGAAGCA&UUUAAAUCCAAGCGAUCUUUU	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN8716_c0_g1_1324_TPlot.pdf
TRINITY_DN8716_c0_g1:1455	si_s67	TRINITY_DN8716_c0_g1	1444	1465	1455	-25.60	-17.62	0.68828125	10	1-9,1465-1457;13-21,1452-1444	10-12,1456-1453[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	AGGAGAAGGCCAAAGAAGUUGC&GCAACUUCU-AUUUUUUUUCUU	4	0.999999922220716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8716_c0_g1_1455_TPlot.pdf
TRINITY_DN8716_c0_g1:1594	si_a592	TRINITY_DN8716_c0_g1	1582	1602	1594	-32.80	-21.80	0.664634146341463	6	1-8,1602-1595;10-12,1594-1592;14-21,1589-1582	9-9,x-x[BULq];13-13,1591-1590[AILt]	((((((((..(((-((((((((&)))))))).)))-.))))))))	UGCGGAGAGCUCU-UCCUUCUU&AAGAAGGACAGA-AUUUUCGCA	3	0.894291352498833	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a592_TRINITY_DN8716_c0_g1_1594_TPlot.pdf
TRINITY_DN871_c0_g1:1409	si_s804	TRINITY_DN871_c0_g1	1398	1418	1409	-27.90	-18.50	0.663082437275986	12	5-16,1414-1403	1-4,1418-1415[UP5];17-21,1402-1398[UP3]	.....((((((((((((....&....)))))))))))).....	AUGCCGGUAACGAAGAUCUAG&UUUUAUCUUCGUUACCUUUUC	4	0.999999999979399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN871_c0_g1_1409_TPlot.pdf
TRINITY_DN8722_c0_g1:6329	si_a502	TRINITY_DN8722_c0_g1	6316	6338	6329	-32.10	-21.30	0.663551401869159	12	1-11,6338-6328;12-18,6325-6319	x-x,6327-6326[BULt];19-21,6318-6316[UP3]	...(((((((..(((((((((((&)))))))))))--)))))))...	AAGCUGAGGGACAGACGGAGGAC&GUUUUUCGUCU--UCCUUGGAAU	3	0.999999999999022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN8722_c0_g1_6329_TPlot.pdf
TRINITY_DN8722_c0_g1:8172	si_a630	TRINITY_DN8722_c0_g1	8161	8181	8172	-25.80	-17.88	0.693023255813953	10	1-5,8181-8177;9-21,8173-8161	6-8,8176-8174[SIL]	(((((((((((((...(((((&)))))...)))))))))))))	UCAGGAGAGUCGGAGGAGUAC&GUAUUAUGUCGAUUUUUUUGA	4	0.999712340139788	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN8722_c0_g1_8172_TPlot.pdf
TRINITY_DN8723_c0_g1:900	si_a188	TRINITY_DN8723_c0_g1	888	909	900	-32.00	-20.80	0.65	13	6-15,904-895;17-20,892-889	1-5,909-905[UP5];16-16,894-893[AILt];21-21,888-888[UP3]	.((((..((((((((((.....&.....))))))))))-.)))).	GAGUGUUACAGGGAGAGUGCGA&AAUAUCUUUCCCUGU-UCACUA	4	0.999966384966176	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN8723_c0_g1_900_TPlot.pdf
TRINITY_DN8725_c0_g1:496	si_a629	TRINITY_DN8725_c0_g1	485	509	496	-26.30	-18.80	0.714828897338403	13	1-9,509-501;10-21,496-485	x-x,500-497[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	CGAAGAAAUUGAAAAACGUGAUGCG&CGUAUUAUG----UCGAUUUUUUUG	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN8725_c0_g1_496_TPlot.pdf
TRINITY_DN8725_c0_g1:564	si_a314	TRINITY_DN8725_c0_g1	553	573	564	-27.10	-18.10	0.66789667896679	9	1-8,573-566;10-15,564-559	9-9,565-565[SIL];16-21,558-553[UP3]	......((((((.((((((((&)))))))).))))))......	GACCAACAUGGAAAGAUCCAA&UUGGAUUUAUCCAUGAUUUUU	4	0.999996529447133	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN8725_c0_g1_564_TPlot.pdf
TRINITY_DN8726_c0_g2:3270	si_a221	TRINITY_DN8726_c0_g2	3259	3279	3270	-25.20	-18.30	0.726190476190476	13.5	7-19,3273-3261	1-6,3279-3274[UP5];20-21,3260-3259[UP3]	..(((((((((((((......&......)))))))))))))..	UGAUAGAAGCAUGAGCGAAGC&AUUAAACUCAUGUUUCUAUAA	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN8726_c0_g2_3270_TPlot.pdf
TRINITY_DN8728_c0_g1:1243	si_a142	TRINITY_DN8728_c0_g1	1232	1252	1243	-23.50	-16.30	0.693617021276596	14.5	7-19,1246-1234	1-6,1252-1247[UP5];20-21,1233-1232[UP3]	..(((((((((((((......&......)))))))))))))..	AGAAAACGACGACGAAGAAAU&AAUUAAUCGUUGUUGUUUUAA	3	0.999999918000445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN8728_c0_g1_1243_TPlot.pdf
TRINITY_DN8728_c1_g1:1064	si_a73	TRINITY_DN8728_c1_g1	1051	1073	1064	-21.90	-16.20	0.73972602739726	9.5	1-11,1073-1063;12-21,1060-1051	x-x,1062-1061[BULt]	((((((((((..(((((((((((&)))))))))))--))))))))))	GAUGAUGAGGACGAUAAUUUGGA&UUCAAAUUGUU--UUUCAUUAUU	2	0.984919490894431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN8728_c1_g1_1064_TPlot.pdf
TRINITY_DN8728_c1_g1:1068	si_a69	TRINITY_DN8728_c1_g1	1055	1077	1068	-24.00	-17.10	0.7125	6	2-15,1076-1063;16-21,1060-1055	1-1,1077-1077[UP5];x-x,1062-1061[BULt]	((((((..((((((((((((((.&.))))))))))))))--))))))	AUGAGGACGAUAAUUUGGAAGAU&UUCUUUCAAAUUGUU--UUUCAU	2	0.998717173747751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8728_c1_g1_1068_TPlot.pdf
TRINITY_DN8728_c1_g1:473	si_s70	TRINITY_DN8728_c1_g1	462	483	473	-25.80	-17.40	0.674418604651163	10.5	1-9,483-475;10-20,473-463	x-x,474-474[BULt];21-21,462-462[UP3]	.(((((((((((.(((((((((&)))))))))-))))))))))).	AGGAGGAAGGGGUGGUAGAGGU&ACUUCUAUU-UUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8728_c1_g1_473_TPlot.pdf
TRINITY_DN8728_c1_g1:741	si_a111	TRINITY_DN8728_c1_g1	730	750	741	-26.20	-17.10	0.652671755725191	14.5	7-19,744-732	1-6,750-745[UP5];20-21,731-730[UP3]	..(((((((((((((......&......)))))))))))))..	AUAGACAAGCUUGUAGCACAA&AUAAAAUACGAGCUUGUUUUA	4	0.999992703178562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN8728_c1_g1_741_TPlot.pdf
TRINITY_DN8728_c1_g1:981	si_s86	TRINITY_DN8728_c1_g1	970	991	981	-32.90	-22.30	0.677811550151976	9	3-7,989-985;8-18,983-973	1-2,991-990[UP5];x-x,984-984[BULt];19-21,972-970[UP3]	...(((((((((((.(((((..&..)))))-)))))))))))...	UUGGAAGAAGAAGAUGAGGAUG&UUUCCUU-UCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN8728_c1_g1_981_TPlot.pdf
TRINITY_DN872_c0_g1:1767	si_a455	TRINITY_DN872_c0_g1	1756	1776	1767	-21.10	-13.90	0.658767772511848	12	3-4,1774-1773;6-19,1771-1758	1-2,1776-1775[UP5];5-5,1772-1772[SIL];20-21,1757-1756[UP3]	..((((((((((((((.((..&..)).))))))))))))))..	UGGUUAUGUGUGAUAAGGAGU&AAUUGUUGUUAUAUAUAAUAU	4	0.999999998747172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN872_c0_g1_1767_TPlot.pdf
TRINITY_DN8730_c0_g1:2164	si_a66	TRINITY_DN8730_c0_g1	2153	2173	2164	-26.70	-17.90	0.670411985018727	5.5	2-10,2172-2164;12-14,2162-2160;16-21,2158-2153	1-1,2173-2173[UP5];11-11,2163-2163[SIL];15-15,2159-2159[SIL]	((((((.(((.(((((((((.&.))))))))).))).))))))	AAAGGCUGUUAGAAAGAAGCA&CGCUUCUUUCAAAUUGUUUUU	4	0.99999999999403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN8730_c0_g1_2164_TPlot.pdf
TRINITY_DN8730_c0_g1:832	si_a67	TRINITY_DN8730_c0_g1	821	846	832	-27.20	-18.10	0.665441176470588	14	1-6,846-841;7-12,835-830;14-21,828-821	x-x,840-836[BULt];13-13,829-829[SIL]	((((((((.((((((.....((((((&))))))-----)))))).))))))))	GGGAGACGUUUUGGAAUUCCAGAAGC&GCUUCU-----UUCAAAUUGUUUUUC	2	0.999999780881983	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8730_c0_g1_832_TPlot.pdf
TRINITY_DN8730_c0_g2:1993	si_a67	TRINITY_DN8730_c0_g2	1982	2002	1993	-27.20	-17.80	0.654411764705882	5.5	1-9,2002-1994;11-13,1992-1990;15-20,1988-1983	10-10,1993-1993[SIL];14-14,1989-1989[SIL];21-21,1982-1982[UP3]	.((((((.(((.(((((((((&))))))))).))).)))))).	UAAAGGCUGUUAGAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999999999999968	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8730_c0_g2_1993_TPlot.pdf
TRINITY_DN8730_c0_g2:1994	si_a66	TRINITY_DN8730_c0_g2	1983	2003	1994	-26.70	-17.90	0.670411985018727	5.5	2-10,2002-1994;12-14,1992-1990;16-21,1988-1983	1-1,2003-2003[UP5];11-11,1993-1993[SIL];15-15,1989-1989[SIL]	((((((.(((.(((((((((.&.))))))))).))).))))))	AAAGGCUGUUAGAAAGAAGCA&CGCUUCUUUCAAAUUGUUUUU	4	0.99999999999534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN8730_c0_g2_1994_TPlot.pdf
TRINITY_DN8730_c0_g2:2059	si_s73	TRINITY_DN8730_c0_g2	2047	2068	2059	-24.00	-16.70	0.695833333333333	6.5	1-3,2068-2066;5-17,2064-2052;18-21,2050-2047	4-4,2065-2065[SIL];x-x,2051-2051[BULt]	((((.(((((((((((((.(((&))).)))))))))))))-))))	GAGGAGAAGGAGGAAAAAAAGA&UCUAUUUUUUUUCUUUC-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8730_c0_g2_2059_TPlot.pdf
TRINITY_DN8730_c0_g2:2063	si_s69	TRINITY_DN8730_c0_g2	2052	2072	2063	-23.40	-15.30	0.653846153846154	8.5	4-7,2069-2066;9-21,2064-2052	1-3,2072-2070[UP5];8-8,2065-2065[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAGGAGGAAAAAAAGAAAAA&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8730_c0_g2_2063_TPlot.pdf
TRINITY_DN8730_c0_g2:662	si_a67	TRINITY_DN8730_c0_g2	651	676	662	-27.20	-18.10	0.665441176470588	14	1-6,676-671;7-12,665-660;14-21,658-651	x-x,670-666[BULt];13-13,659-659[SIL]	((((((((.((((((.....((((((&))))))-----)))))).))))))))	GGGAGACGUUUUGGAAUUCCAGAAGC&GCUUCU-----UUCAAAUUGUUUUUC	2	0.999999630426837	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8730_c0_g2_662_TPlot.pdf
TRINITY_DN8731_c0_g1:4414	si_s80	TRINITY_DN8731_c0_g1	4403	4423	4414	-28.20	-18.70	0.663120567375887	8	1-15,4423-4409	16-21,4408-4403[UP3]	......(((((((((((((((&)))))))))))))))......	UUAAUCGAAGGGGAAGAAAAA&UUUUUCUUUCCUUUCUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8731_c0_g1_4414_TPlot.pdf
TRINITY_DN8731_c0_g1:4417	si_s77	TRINITY_DN8731_c0_g1	4406	4426	4417	-25.50	-20.90	0.819607843137255	5	1-18,4426-4409	19-21,4408-4406[UP3]	...((((((((((((((((((&))))))))))))))))))...	AUCGAAGGGGAAGAAAAAAAG&UUUUUUUUCUUUCCUUUCUUC	2	0.994632443542017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8731_c0_g1_4417_TPlot.pdf
TRINITY_DN8731_c0_g1:4418	si_s76	TRINITY_DN8731_c0_g1	4407	4427	4418	-23.60	-20.90	0.885593220338983	5	2-19,4426-4409	1-1,4427-4427[UP5];20-21,4408-4407[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UCGAAGGGGAAGAAAAAAAGG&AUUUUUUUUCUUUCCUUUCUU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8731_c0_g1_4418_TPlot.pdf
TRINITY_DN8731_c0_g1:4419	si_s75	TRINITY_DN8731_c0_g1	4408	4428	4419	-24.00	-20.90	0.870833333333333	6	3-20,4426-4409	1-2,4428-4427[UP5];21-21,4408-4408[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CGAAGGGGAAGAAAAAAAGGA&UAUUUUUUUUCUUUCCUUUCU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8731_c0_g1_4419_TPlot.pdf
TRINITY_DN8731_c0_g1:4420	si_s74	TRINITY_DN8731_c0_g1	4409	4429	4420	-25.00	-20.60	0.824	7	4-21,4426-4409	1-3,4429-4427[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGGGGAAGAAAAAAAGGAA&CUAUUUUUUUUCUUUCCUUUC	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8731_c0_g1_4420_TPlot.pdf
TRINITY_DN8731_c0_g1:4421	si_s73	TRINITY_DN8731_c0_g1	4410	4428	4421	-24.00	-17.60	0.733333333333333	6	1-3,4428-4426;6-21,4425-4410	4-5,x-x[BULq]	((((((((((((((((--(((&)))..))))))))))))))))	AAGGGGAAGAAAAAAA--GGA&UCUAUUUUUUUUCUUUCCUUU	2	0.999999806524868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8731_c0_g1_4421_TPlot.pdf
TRINITY_DN8731_c0_g1:4422	si_s72	TRINITY_DN8731_c0_g1	4411	4429	4422	-24.10	-17.40	0.721991701244813	6	1-4,4429-4426;7-21,4425-4411	5-6,x-x[BULq]	(((((((((((((((--((((&))))..)))))))))))))))	AGGGGAAGAAAAAAA--GGAA&UUCUAUUUUUUUUCUUUCCUU	2	0.999999983745572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8731_c0_g1_4422_TPlot.pdf
TRINITY_DN8731_c0_g1:4468	si_s68	TRINITY_DN8731_c0_g1	4455	4477	4468	-23.10	-15.10	0.653679653679654	9	4-13,4474-4465;14-21,4462-4455	1-3,4477-4475[UP5];x-x,4464-4463[BULt]	((((((((..((((((((((...&...))))))))))--))))))))	AGAGAAAAAUGAAAUAGAGGAAG&CAACUUCUAUUUU--UUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8731_c0_g1_4468_TPlot.pdf
TRINITY_DN8732_c0_g1:1927	si_s463	TRINITY_DN8732_c0_g1	1916	1935	1927	-31.90	-22.00	0.689655172413793	9	1-6,1935-1930;8-10,1929-1927;12-20,1925-1917	7-7,x-x[BULq];11-11,1926-1926[SIL];21-21,1916-1916[UP3]	.(((((((((.(((-((((((&)))))).))).))))))))).	CUCCGUUGGGAGUG-GGUGAU&AUUAUCUCAUAUCCAACGGAU	4	0.483435690986687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN8732_c0_g1_1927_TPlot.pdf
TRINITY_DN8732_c0_g1:2576	si_s50	TRINITY_DN8732_c0_g1	2562	2585	2576	-29.00	-19.10	0.658620689655173	11.5	2-4,2584-2582;6-12,2580-2574;13-19,2570-2564	1-1,2585-2585[UP5];5-5,2581-2581[SIL];x-x,2573-2571[BULt];20-21,2563-2562[UP3]	..(((((((...(((((((.(((.&.))).)))))))---)))))))..	GCGCUGACUACAUGAAAUCGAAUG&AAUUGGAUUUCA---AGUUAGCAA	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN8732_c0_g1_2576_TPlot.pdf
TRINITY_DN8736_c0_g1:2116	si_a411	TRINITY_DN8736_c0_g1	2105	2125	2116	-17.90	-11.80	0.659217877094972	10.5	4-7,2122-2119;9-21,2117-2105	1-3,2125-2123[UP5];8-8,2118-2118[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GUUUGUUUGGAUAAAAGCUCA&UUUGUUUAUAUUUAAAUAAAU	4	0.999999999996049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN8736_c0_g1_2116_TPlot.pdf
TRINITY_DN8738_c0_g1:2594	si_a637	TRINITY_DN8738_c0_g1	2584	2603	2594	-25.80	-17.30	0.670542635658915	10.5	1-13,2603-2591;15-16,2590-2589	14-14,x-x[BULq];17-21,2588-2584[UP3]	.....((-(((((((((((((&))))))))))))).)).....	CAUGGGC-CAGGAGGAUCGAC&GUCGAUUUUUUUGAGUAAUAU	4	0.999999990128624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN8738_c0_g1_2594_TPlot.pdf
TRINITY_DN8738_c0_g1:2599	si_a632	TRINITY_DN8738_c0_g1	2589	2608	2599	-26.10	-17.90	0.685823754789272	11	5-18,2604-2591;20-21,2590-2589	1-4,2608-2605[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	GC-CAGGAGGAUCGACAGCUG&AUUAUGUCGAUUUUUUUGAGU	4	0.999992395626426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN8738_c0_g1_2599_TPlot.pdf
TRINITY_DN8738_c0_g1:2854	si_a637	TRINITY_DN8738_c0_g1	2844	2863	2854	-25.80	-17.20	0.666666666666667	9.5	1-13,2863-2851;15-16,2850-2849	14-14,x-x[BULq];17-21,2848-2844[UP3]	.....((-(((((((((((((&))))))))))))).)).....	UCGAGGC-CGAGAAGAUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.999999997035464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN8738_c0_g1_2854_TPlot.pdf
TRINITY_DN8738_c0_g1:2855	si_a636	TRINITY_DN8738_c0_g1	2845	2864	2855	-26.30	-17.20	0.653992395437262	9	2-14,2863-2851;16-17,2850-2849	1-1,2864-2864[UP5];15-15,x-x[BULq];18-21,2848-2845[UP3]	....((-(((((((((((((.&.))))))))))))).))....	CGAGGC-CGAGAAGAUCGACC&UGUCGAUUUUUUUGAGUAAUA	3	0.999999999966873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN8738_c0_g1_2855_TPlot.pdf
TRINITY_DN8738_c0_g1:3293	si_s633	TRINITY_DN8738_c0_g1	3280	3301	3293	-37.90	-24.70	0.651715039577836	8.5	1-6,3301-3296;8-11,3295-3292;12-17,3290-3285;18-20,3283-3281	7-7,x-x[BULq];x-x,3291-3291[BULt];x-x,3284-3284[BULt];21-21,3280-3280[UP3]	.(((.((((((.((((-((((((&)))))).))))-))))))-))).	CGGGCCGAACGUCCUG-GAGAAG&CUUUUCGUAGG-CGUUUG-CCCU	4	0.999996307731695	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN8738_c0_g1_3293_TPlot.pdf
TRINITY_DN8738_c0_g1:3404	si_s629	TRINITY_DN8738_c0_g1	3393	3416	3404	-34.60	-22.70	0.65606936416185	10.5	1-4,3416-3413;5-12,3409-3402;14-21,3400-3393	x-x,3412-3410[BULt];13-13,3401-3401[SIL]	((((((((.((((((((...((((&))))---)))))))).))))))))	CGGACGUCAACGAAGAGGAUGUCG&CGAU---CUUUUCGUAGGCGUUUG	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN8738_c0_g1_3404_TPlot.pdf
TRINITY_DN8738_c0_g1:4205	si_s81	TRINITY_DN8738_c0_g1	4194	4214	4205	-28.90	-20.10	0.695501730103806	9.5	1-5,4214-4210;8-14,4207-4201;16-20,4199-4195	6-7,4209-4208[SIL];15-15,4200-4200[SIL];21-21,4194-4194[UP3]	.(((((.(((((((..(((((&)))))..))))))).))))).	CGGAGACGAGGGGAUUGAAGA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN8738_c0_g1_4205_TPlot.pdf
TRINITY_DN8738_c0_g1:4208	si_s78	TRINITY_DN8738_c0_g1	4197	4217	4208	-26.20	-18.70	0.713740458015267	8	1-8,4217-4210;11-17,4207-4201;19-21,4199-4197	9-10,4209-4208[SIL];18-18,4200-4200[SIL]	(((.(((((((..((((((((&))))))))..))))))).)))	AGACGAGGGGAUUGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8738_c0_g1_4208_TPlot.pdf
TRINITY_DN8738_c0_g1:5419	si_a627	TRINITY_DN8738_c0_g1	5408	5428	5419	-29.50	-20.90	0.708474576271186	9	2-15,5427-5414	1-1,5428-5428[UP5];16-21,5413-5408[UP3]	......((((((((((((((.&.))))))))))))))......	CGUCAUUCGAUAUAAUGCGCA&GGCGUAUUAUGUCGAUUUUUU	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN8738_c0_g1_5419_TPlot.pdf
TRINITY_DN8738_c0_g1:7878	si_a784	TRINITY_DN8738_c0_g1	7867	7887	7878	-24.70	-20.40	0.825910931174089	6	1-8,7887-7880;10-20,7878-7868	9-9,7879-7879[SIL];21-21,7867-7867[UP3]	.(((((((((((.((((((((&)))))))).))))))))))).	CAAGUGGAAGAGAAGAAGAGU&ACUCUUCUAUUUUUCUAUUUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8738_c0_g1_7878_TPlot.pdf
TRINITY_DN8738_c0_g1:7882	si_a788	TRINITY_DN8738_c0_g1	7870	7891	7882	-24.80	-17.40	0.701612903225806	9.5	3-12,7889-7880;14-20,7877-7871	1-2,7891-7890[UP5];13-13,7879-7878[AILt];21-21,7870-7870[UP3]	.(((((((..((((((((((..&..))))))))))-.))))))).	GUGGAAGAGAAGAAGAGUAGCA&UUCUAUUUUUCU-AUUUUCCAA	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN8738_c0_g1_7882_TPlot.pdf
TRINITY_DN8738_c0_g1:7885	si_s69	TRINITY_DN8738_c0_g1	7874	7894	7885	-23.40	-15.50	0.662393162393162	9	3-4,7892-7891;6-20,7889-7875	1-2,7894-7893[UP5];5-5,7890-7890[SIL];21-21,7874-7874[UP3]	.(((((((((((((((.((..&..)).))))))))))))))).	AAGAGAAGAAGAGUAGCAGAA&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8738_c0_g1_7885_TPlot.pdf
TRINITY_DN8738_c0_g1:8317	si_a498	TRINITY_DN8738_c0_g1	8306	8326	8317	-33.50	-21.90	0.653731343283582	8.5	1-4,8326-8323;6-8,8321-8319;10-13,8317-8314;15-21,8312-8306	5-5,8322-8322[SIL];9-9,8318-8318[SIL];14-14,8313-8313[SIL]	(((((((.((((.(((.((((&)))).))).)))).)))))))	CAGGGGACGCGAUGGAGGACA&UGUCGUUUUUCGUCUUCCUUG	2	0.999999999239202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN8738_c0_g1_8317_TPlot.pdf
TRINITY_DN8738_c0_g1:906	si_s70	TRINITY_DN8738_c0_g1	895	915	906	-25.80	-18.20	0.705426356589147	11.5	4-9,912-907;11-21,905-895	1-3,915-913[UP5];10-10,906-906[SIL]	(((((((((((.((((((...&...)))))).)))))))))))	GGAGAGAGGAGCGAUGGACGC&ACUUCUAUUUUUUUUCUUUCC	4	0.99999999997897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8738_c0_g1_906_TPlot.pdf
TRINITY_DN873_c0_g1:1035	si_a19	TRINITY_DN873_c0_g1	1020	1044	1035	-27.00	-18.20	0.674074074074074	12	1-10,1044-1035;11-18,1030-1023;20-21,1021-1020	x-x,1034-1031[BULt];19-19,1022-1022[SIL]	((.((((((((....((((((((((&))))))))))----)))))))).))	AGUACUAAAGAAAAUUGAAUGGGCU&AGCCUAUUUA----UUUUUAGUUCU	2	0.997083128970816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN873_c0_g1_1035_TPlot.pdf
TRINITY_DN873_c0_g1:1036	si_a18	TRINITY_DN873_c0_g1	1021	1045	1036	-26.30	-17.40	0.661596958174905	13.5	2-11,1044-1035;12-19,1030-1023	1-1,1045-1045[UP5];x-x,1034-1031[BULt];20-21,1022-1021[UP3]	..((((((((....((((((((((.&.))))))))))----))))))))..	GUACUAAAGAAAAUUGAAUGGGCUG&AAGCCUAUUUA----UUUUUAGUUC	2	0.999501843830559	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN873_c0_g1_1036_TPlot.pdf
TRINITY_DN873_c0_g1:1037	si_a17	TRINITY_DN873_c0_g1	1022	1046	1037	-24.30	-17.40	0.716049382716049	14.5	3-12,1044-1035;13-20,1030-1023	1-2,1046-1045[UP5];x-x,1034-1031[BULt];21-21,1022-1022[UP3]	.((((((((....((((((((((..&..))))))))))----)))))))).	UACUAAAGAAAAUUGAAUGGGCUGA&AAAGCCUAUUUA----UUUUUAGUU	3	0.991752086925703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN873_c0_g1_1037_TPlot.pdf
TRINITY_DN873_c0_g1:875	si_a71	TRINITY_DN873_c0_g1	864	884	875	-23.30	-15.70	0.67381974248927	9.5	1-8,884-877;11-19,874-866	9-10,876-875[SIL];20-21,865-864[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	GUGUGGAAGAUUUUUUGAAGG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999484294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN873_c0_g1_875_TPlot.pdf
TRINITY_DN873_c0_g1:878	si_a68	TRINITY_DN873_c0_g1	867	887	878	-25.40	-16.80	0.661417322834646	6.5	2-11,886-877;14-21,874-867	1-1,887-887[UP5];12-13,876-875[SIL]	((((((((..((((((((((.&.))))))))))..))))))))	UGGAAGAUUUUUUGAAGGAAC&CUUCUUUCAAAUUGUUUUUCA	3	0.99999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN873_c0_g1_878_TPlot.pdf
TRINITY_DN8740_c0_g1:3529	si_s534	TRINITY_DN8740_c0_g1	3518	3539	3529	-28.80	-19.30	0.670138888888889	10	2-6,3538-3534;7-18,3532-3521	1-1,3539-3539[UP5];x-x,3533-3533[BULt];19-21,3520-3518[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	CGGGGUUGGAUCGGACGAUGAA&AUCAUU-UUUGAUCCGAUCAAA	2	0.93690066453088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN8740_c0_g1_3529_TPlot.pdf
TRINITY_DN8741_c0_g1:1128	si_a547	TRINITY_DN8741_c0_g1	1117	1137	1128	-26.90	-18.56	0.68996282527881	9	1-5,1137-1133;10-21,1128-1117	6-9,1132-1129[SIL]	((((((((((((....(((((&)))))....))))))))))))	AGAUAGAGGAAUUAUGUGAAC&GUUCAAUCUAUUUCUUUAUCU	4	0.997588650757977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN8741_c0_g1_1128_TPlot.pdf
TRINITY_DN8741_c0_g1:3474	si_a336	TRINITY_DN8741_c0_g1	3463	3483	3474	-31.20	-20.70	0.663461538461538	14	4-14,3480-3470	1-3,3483-3481[UP5];15-21,3469-3463[UP3]	.......(((((((((((...&...))))))))))).......	UGAGAAACGGGGCAGGGACUG&UAUUCCUUGUCCCGAAAAUAU	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN8741_c0_g1_3474_TPlot.pdf
TRINITY_DN8741_c0_g1:3476	si_a334	TRINITY_DN8741_c0_g1	3465	3485	3476	-30.70	-21.40	0.697068403908795	11	2-4,3484-3482;6-16,3480-3470	1-1,3485-3485[UP5];5-5,3481-3481[SIL];17-21,3469-3465[UP3]	.....(((((((((((.(((.&.))).))))))))))).....	AGAAACGGGGCAGGGACUGAG&UUUAUUCCUUGUCCCGAAAAU	2	0.876430682357281	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN8741_c0_g1_3476_TPlot.pdf
TRINITY_DN8741_c0_g1:4267	si_a145	TRINITY_DN8741_c0_g1	4256	4276	4267	-28.10	-18.60	0.661921708185053	12	5-10,4272-4267;12-20,4265-4257	1-4,4276-4273[UP5];11-11,4266-4266[SIL];21-21,4256-4256[UP3]	.(((((((((.((((((....&....)))))).))))))))).	CCCUUGAAGCUACAGCGCCAC&UAAUCGUUGUUGUUUUAAGGU	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN8741_c0_g1_4267_TPlot.pdf
TRINITY_DN8741_c0_g1:4469	si_s84	TRINITY_DN8741_c0_g1	4458	4478	4469	-32.30	-21.80	0.674922600619195	8.5	1-7,4478-4472;9-19,4470-4460	8-8,4471-4471[SIL];20-21,4459-4458[UP3]	..(((((((((((.(((((((&))))))).)))))))))))..	CAAAGAAGGGGGAUGGGGAGA&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8741_c0_g1_4469_TPlot.pdf
TRINITY_DN8741_c0_g1:4471	si_s82	TRINITY_DN8741_c0_g1	4460	4480	4471	-28.90	-22.00	0.761245674740484	9	3-9,4478-4472;11-21,4470-4460	1-2,4480-4479[UP5];10-10,4471-4471[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	AAGAAGGGGGAUGGGGAGAUU&UUUCUUUCCUUUCUUCUUCUU	4	0.999999953576019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN8741_c0_g1_4471_TPlot.pdf
TRINITY_DN8741_c0_g1:747	si_a199	TRINITY_DN8741_c0_g1	736	756	747	-30.50	-20.14	0.660327868852459	11.5	1-7,756-750;13-21,744-736	8-12,749-745[SIL]	(((((((((.....(((((((&))))))).....)))))))))	GGUCGAUUUUAACUUGAGCAG&CUGUUCACUAAUAAAUCGACU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a199_TRINITY_DN8741_c0_g1_747_TPlot.pdf
TRINITY_DN8742_c0_g1:815	si_s609	TRINITY_DN8742_c0_g1	804	823	815	-27.70	-18.30	0.660649819494585	5	1-4,823-820;6-11,819-814;13-21,812-804	5-5,x-x[BULq];12-12,813-813[SIL]	(((((((((.((((((-((((&)))).)))))).)))))))))	GCUUGGAUUCAAAAGA-AUUC&GAAUCUUUUUUAAAUCCAAGC	2	0.917026148796296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s609_TRINITY_DN8742_c0_g1_815_TPlot.pdf
TRINITY_DN8743_c0_g1:1156	si_s490	TRINITY_DN8743_c0_g1	1145	1165	1156	-17.80	-11.60	0.651685393258427	6	1-6,1165-1160;9-19,1157-1147	7-8,1159-1158[SIL];20-21,1146-1145[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	AAUUGUUUAUAUUAUAAUAAA&UUUAUUUAAAUAUAAACAAAA	2	0.998838750636804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN8743_c0_g1_1156_TPlot.pdf
TRINITY_DN8743_c0_g1:1158	si_s488	TRINITY_DN8743_c0_g1	1147	1167	1158	-18.30	-13.80	0.754098360655738	4	1-8,1167-1160;11-21,1157-1147	9-10,1159-1158[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	UUGUUUAUAUUAUAAUAAAUA&UAUUUAUUUAAAUAUAAACAA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN8743_c0_g1_1158_TPlot.pdf
TRINITY_DN8743_c0_g1:1159	si_s487	TRINITY_DN8743_c0_g1	1148	1168	1159	-18.40	-14.00	0.760869565217391	4	1-9,1168-1160;12-21,1157-1148	10-11,1159-1158[SIL]	((((((((((..(((((((((&)))))))))..))))))))))	UGUUUAUAUUAUAAUAAAUAU&AUAUUUAUUUAAAUAUAAACA	2	0.576323153773264	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s487_TRINITY_DN8743_c0_g1_1159_TPlot.pdf
TRINITY_DN8745_c1_g1:130	si_a410	TRINITY_DN8745_c1_g1	119	139	130	-17.80	-11.70	0.657303370786517	9	1-15,139-125	16-21,124-119[UP3]	......(((((((((((((((&)))))))))))))))......	GUCUACUAAAUAUAGAUAGAA&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8745_c1_g1_130_TPlot.pdf
TRINITY_DN8746_c1_g1:772	si_a642	TRINITY_DN8746_c1_g1	762	781	772	-25.90	-17.60	0.67953667953668	9	2-5,780-777;7-11,775-771;14-21,769-762	1-1,781-781[UP5];6-6,776-776[SIL];12-13,770-770[AILq]	((((((((.-(((((.((((.&.)))).)))))..))))))))	CCGGUGUAG-GCUCAUGAAAU&UUUUUUUGAGUAAUAUAUCGG	4	0.98889138414363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN8746_c1_g1_772_TPlot.pdf
TRINITY_DN8749_c0_g1:1443	si_a62	TRINITY_DN8749_c0_g1	1432	1453	1443	-32.20	-21.20	0.658385093167702	9	1-7,1453-1447;8-14,1445-1439	x-x,1446-1446[BULt];15-21,1438-1432[UP3]	.......(((((((.(((((((&)))))))-))))))).......	AAAUAAAGAAAGAAGGCGAGUC&GACUCGC-UUCUUUCAAAUUGU	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN8749_c0_g1_1443_TPlot.pdf
TRINITY_DN8749_c0_g1:1447	si_a59	TRINITY_DN8749_c0_g1	1435	1457	1447	-34.00	-22.60	0.664705882352941	8.5	1-3,1457-1455;4-10,1453-1447;11-17,1445-1439	x-x,1454-1454[BULt];x-x,1446-1446[BULt];18-21,1438-1435[UP3]	....(((((((.(((((((.(((&)))-)))))))-)))))))....	UAAAGAAAGAAGGCGAGUCUGAU&GUC-GACUCGC-UUCUUUCAAAU	4	0.999801613672495	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN8749_c0_g1_1447_TPlot.pdf
TRINITY_DN8749_c0_g1:1448	si_a58	TRINITY_DN8749_c0_g1	1436	1458	1448	-34.60	-22.60	0.653179190751445	9	2-4,1457-1455;5-11,1453-1447;12-18,1445-1439	1-1,1458-1458[UP5];x-x,1454-1454[BULt];x-x,1446-1446[BULt];19-21,1438-1436[UP3]	...(((((((.(((((((.(((.&.)))-)))))))-)))))))...	AAAGAAAGAAGGCGAGUCUGAUG&AGUC-GACUCGC-UUCUUUCAAA	3	0.999959811534454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN8749_c0_g1_1448_TPlot.pdf
TRINITY_DN874_c0_g1:1035	si_a17	TRINITY_DN874_c0_g1	1024	1043	1035	-24.30	-17.40	0.716049382716049	6.5	1-7,1043-1037;9-21,1036-1024	8-8,x-x[BULq]	(((((((((((((-(((((((&))))))).)))))))))))))	AGCUAAGGAUGGA-AGGUUUU&AAAGCCUAUUUAUUUUUAGUU	3	0.993125867470177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN874_c0_g1_1035_TPlot.pdf
TRINITY_DN874_c0_g1:1060	si_a167	TRINITY_DN874_c0_g1	1049	1069	1060	-34.00	-23.20	0.682352941176471	8.5	2-8,1068-1062;11-20,1059-1050	1-1,1069-1069[UP5];9-10,1061-1060[SIL];21-21,1049-1049[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	UUCUAGAUGGGCCGAUAGGUA&AAUCUAUUCACCCGUCUAGAU	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a167_TRINITY_DN874_c0_g1_1060_TPlot.pdf
TRINITY_DN874_c0_g1:1061	si_a166	TRINITY_DN874_c0_g1	1050	1070	1061	-35.50	-23.10	0.650704225352113	9.5	3-9,1068-1062;12-21,1059-1050	1-2,1070-1069[UP5];10-11,1061-1060[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	UCUAGAUGGGCCGAUAGGUAU&CAAUCUAUUCACCCGUCUAGA	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a166_TRINITY_DN874_c0_g1_1061_TPlot.pdf
TRINITY_DN8750_c0_g1:1766	si_s81	TRINITY_DN8750_c0_g1	1751	1775	1766	-28.90	-20.90	0.72318339100346	8	1-11,1775-1765;12-16,1761-1757;17-21,1755-1751	x-x,1764-1762[BULt];x-x,1756-1756[BULt]	(((((.(((((...(((((((((((&)))))))))))---)))))-)))))	GGAGGAAAGAAAAUAGGAAAGAAAA&UUUUCUUUCCU---UUCUU-CUUCU	4	0.999999999999955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN8750_c0_g1_1766_TPlot.pdf
TRINITY_DN8750_c0_g1:1767	si_s80	TRINITY_DN8750_c0_g1	1752	1776	1767	-28.20	-20.50	0.726950354609929	7.5	1-12,1776-1765;13-17,1761-1757;18-21,1755-1752	x-x,1764-1762[BULt];x-x,1756-1756[BULt]	((((.(((((...((((((((((((&))))))))))))---)))))-))))	GAGGAAAGAAAAUAGGAAAGAAAAA&UUUUUCUUUCCU---UUCUU-CUUC	4	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8750_c0_g1_1767_TPlot.pdf
TRINITY_DN8750_c0_g1:438	si_s434	TRINITY_DN8750_c0_g1	427	447	438	-21.50	-17.10	0.795348837209302	6.5	1-16,447-432	17-21,431-427[UP3]	.....((((((((((((((((&)))))))))))))))).....	CAACGAGUAUGUGAUUAUUGU&ACAAUAAUUACAUAUUAUAUA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN8750_c0_g1_438_TPlot.pdf
TRINITY_DN8750_c0_g1:442	si_s430	TRINITY_DN8750_c0_g1	431	451	442	-21.30	-17.90	0.84037558685446	4	1-3,451-449;5-20,447-432	4-4,448-448[SIL];21-21,431-431[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	GAGUAUGUGAUUAUUGUCAUA&UAUAACAAUAAUUACAUAUUA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN8750_c0_g1_442_TPlot.pdf
TRINITY_DN8750_c0_g1:443	si_s429	TRINITY_DN8750_c0_g1	432	452	443	-21.10	-17.50	0.829383886255924	4	2-4,451-449;6-21,447-432	1-1,452-452[UP5];5-5,448-448[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AGUAUGUGAUUAUUGUCAUAA&AUAUAACAAUAAUUACAUAUU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN8750_c0_g1_443_TPlot.pdf
TRINITY_DN8753_c0_g1:409	si_a734	TRINITY_DN8753_c0_g1	395	418	409	-42.40	-33.40	0.787735849056604	10.5	1-10,418-409;11-19,405-397	x-x,408-406[BULt];20-21,396-395[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	ACGGCCAGGGGAGCUAGGGAUGCU&GGCAUCUUUA---CCCCUGGCCAU	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN8753_c0_g1_409_TPlot.pdf
TRINITY_DN8755_c0_g1:736	si_s90	TRINITY_DN8755_c0_g1	725	750	736	-35.30	-24.00	0.679886685552408	15.5	2-9,749-742;10-20,736-726	1-1,750-750[UP5];x-x,741-737[BULt];21-21,725-725[UP3]	.(((((((((((.....((((((((.&.))))))))-----))))))))))).	ACGAAGCGGAGAAAAUCAGGGGAAGA&CUUUCUUCU-----UCUUCGCUUCGG	2	0.999998961659464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN8755_c0_g1_736_TPlot.pdf
TRINITY_DN8757_c0_g2:1215	si_s158	TRINITY_DN8757_c0_g2	1204	1224	1215	-44.90	-33.10	0.737193763919822	8	1-1,1224-1224;4-8,1221-1217;10-21,1215-1204	2-3,1223-1222[SIL];9-9,1216-1216[SIL]	((((((((((((.(((((..(&)..))))).))))))))))))	UGCUCCUGGCCAGGAGCCGAC&GGAGGUUCAUGGCCAGGGGUA	3	0.432677928788554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN8757_c0_g2_1215_TPlot.pdf
TRINITY_DN8757_c0_g2:1217	si_s156	TRINITY_DN8757_c0_g2	1206	1226	1217	-44.40	-32.10	0.722972972972973	8.5	2-3,1225-1224;6-10,1221-1217;12-21,1215-1206	1-1,1226-1226[UP5];4-5,1223-1222[SIL];11-11,1216-1216[SIL]	((((((((((.(((((..((.&.))..))))).))))))))))	CUCCUGGCCAGGAGCCGACUA&AAGGAGGUUCAUGGCCAGGGG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s156_TRINITY_DN8757_c0_g2_1217_TPlot.pdf
TRINITY_DN8757_c0_g2:1218	si_s155	TRINITY_DN8757_c0_g2	1207	1227	1218	-42.00	-29.10	0.692857142857143	10.5	3-4,1225-1224;7-11,1221-1217;13-21,1215-1207	1-2,1227-1226[UP5];5-6,1223-1222[SIL];12-12,1216-1216[SIL]	(((((((((.(((((..((..&..))..))))).)))))))))	UCCUGGCCAGGAGCCGACUAC&AAAGGAGGUUCAUGGCCAGGG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN8757_c0_g2_1218_TPlot.pdf
TRINITY_DN8757_c0_g3:399	si_a438	TRINITY_DN8757_c0_g3	388	408	399	-31.70	-20.80	0.65615141955836	7.5	2-12,407-397;14-19,395-390	1-1,408-408[UP5];13-13,396-396[SIL];20-21,389-388[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	CCUUGUCUGGUAUCCAGUGGC&UCCGUUGGAUAUGAGAUAAUU	4	0.99279891671553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a438_TRINITY_DN8757_c0_g3_399_TPlot.pdf
TRINITY_DN8757_c0_g3:51	si_a667	TRINITY_DN8757_c0_g3	40	60	51	-32.10	-21.30	0.663551401869159	8	1-4,60-57;6-18,55-43	5-5,56-56[SIL];19-21,42-40[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UUCAUAAGGAGUUAGUUGGCA&UGCCUAUUGAUUCCUUAUUCA	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a667_TRINITY_DN8757_c0_g3_51_TPlot.pdf
TRINITY_DN8757_c0_g3:52	si_a666	TRINITY_DN8757_c0_g3	41	61	52	-31.60	-21.30	0.674050632911392	8	2-5,60-57;7-19,55-43	1-1,61-61[UP5];6-6,56-56[SIL];20-21,42-41[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	UCAUAAGGAGUUAGUUGGCAG&AUGCCUAUUGAUUCCUUAUUC	2	0.831328000806598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a666_TRINITY_DN8757_c0_g3_52_TPlot.pdf
TRINITY_DN8757_c0_g3:53	si_a665	TRINITY_DN8757_c0_g3	42	62	53	-29.60	-21.30	0.719594594594595	8.5	3-6,60-57;8-20,55-43	1-2,62-61[UP5];7-7,56-56[SIL];21-21,42-42[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	CAUAAGGAGUUAGUUGGCAGU&AAUGCCUAUUGAUUCCUUAUU	2	0.681790622361379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN8757_c0_g3_53_TPlot.pdf
TRINITY_DN875_c0_g1:1149	si_a391	TRINITY_DN875_c0_g1	1138	1158	1149	-22.80	-15.10	0.662280701754386	9.5	1-4,1158-1155;6-9,1153-1150;12-20,1147-1139	5-5,1154-1154[SIL];10-11,1149-1148[SIL];21-21,1138-1138[UP3]	.(((((((((..((((.((((&)))).))))..))))))))).	UGCAAUUCUAGUUUCUAGGUU&AAUUAAGAAUAUAGAAUUGUU	4	0.985768905574726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN875_c0_g1_1149_TPlot.pdf
TRINITY_DN875_c0_g1:608	si_s897	TRINITY_DN875_c0_g1	598	617	608	-31.30	-20.72	0.661980830670927	5	1-12,617-606;17-21,602-598	13-16,605-603[AILq]	(((((...-((((((((((((&))))))))))))....)))))	UUGAACGU-AGGAGAAAGCCU&AGGCUUUCUCUUCAAUUUCAA	2	0.999796678004897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN875_c0_g1_608_TPlot.pdf
TRINITY_DN8763_c0_g1:219	si_s415	TRINITY_DN8763_c0_g1	208	229	219	-26.60	-17.30	0.650375939849624	10.5	4-6,226-224;7-19,222-210	1-3,229-227[UP5];x-x,223-223[BULt];20-21,209-208[UP3]	..(((((((((((((.(((...&...)))-)))))))))))))..	CCUGUAUAGGAUAUGAUCGAUA&AAACGA-CAUAUUCUAUAUAAC	1	0.0374712657912426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s415_TRINITY_DN8763_c0_g1_219_TPlot.pdf
TRINITY_DN8765_c0_g1:1313	si_a760	TRINITY_DN8765_c0_g1	1302	1322	1313	-31.10	-20.34	0.654019292604502	10	1-9,1322-1314;15-20,1308-1303	10-14,1313-1309[SIL];21-21,1302-1302[UP3]	.((((((.....(((((((((&))))))))).....)))))).	CUCAGUUUCAUUCCCAAAGGA&UCCUUUGGGUUUUUGAUUGAU	4	0.99999999929713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN8765_c0_g1_1313_TPlot.pdf
TRINITY_DN8765_c0_g1:2009	si_s761	TRINITY_DN8765_c0_g1	1998	2019	2009	-25.90	-17.00	0.656370656370656	7	3-6,2017-2014;7-14,2012-2005;16-20,2003-1999	1-2,2019-2018[UP5];x-x,2013-2013[BULt];15-15,2004-2004[SIL];21-21,1998-1998[UP3]	.(((((.((((((((.((((..&..))))-)))))))).))))).	CGUAAUAAAUCGUUGUUUGUAA&AAACAA-CAACGAUUAAUUACU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN8765_c0_g1_2009_TPlot.pdf
TRINITY_DN8765_c0_g1:353	si_a116	TRINITY_DN8765_c0_g1	342	363	353	-31.10	-20.50	0.659163987138264	10.5	1-5,363-359;7-19,356-344	6-6,358-357[AILt];20-21,343-342[UP3]	..(((((((((((((..(((((&)))))-.)))))))))))))..	AUCUGUGGAGCAAGUGACGUGU&AUACG-AGCUUGUUUUAUAGCA	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN8765_c0_g1_353_TPlot.pdf
TRINITY_DN8765_c0_g1:356	si_a113	TRINITY_DN8765_c0_g1	345	366	356	-26.20	-18.40	0.702290076335878	13	4-8,363-359;10-21,356-345	1-3,366-364[UP5];9-9,358-357[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	UGUGGAGCAAGUGACGUGUGUC&AAAAUACG-AGCUUGUUUUAUA	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN8765_c0_g1_356_TPlot.pdf
TRINITY_DN8765_c0_g1:357	si_a112	TRINITY_DN8765_c0_g1	346	367	357	-26.20	-17.20	0.656488549618321	15	5-9,363-359;11-21,356-346	1-4,367-364[UP5];10-10,358-357[AILt]	(((((((((((..(((((....&....)))))-.)))))))))))	GUGGAGCAAGUGACGUGUGUCC&UAAAAUACG-AGCUUGUUUUAU	3	0.999994692112501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN8765_c0_g1_357_TPlot.pdf
TRINITY_DN8765_c0_g1:681	si_a446	TRINITY_DN8765_c0_g1	668	690	681	-25.50	-16.58	0.650196078431373	11	1-11,690-680;14-18,675-671	12-13,679-676[AILt];19-21,670-668[UP3]	...(((((....(((((((((((&)))))))))))--..)))))...	GUUGCAGCUGAUUUAUCUCAUAU&AUAUGAGAUAA--UUGUUGUUAU	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN8765_c0_g1_681_TPlot.pdf
TRINITY_DN8765_c0_g1:682	si_a445	TRINITY_DN8765_c0_g1	669	691	682	-27.30	-17.88	0.654945054945055	9.5	1-12,691-680;15-19,675-671	13-14,679-676[AILt];20-21,670-669[UP3]	..(((((....((((((((((((&))))))))))))--..)))))..	UUGCAGCUGAUUUAUCUCAUAUU&GAUAUGAGAUAA--UUGUUGUUA	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN8765_c0_g1_682_TPlot.pdf
TRINITY_DN8765_c0_g1:755	si_a406	TRINITY_DN8765_c0_g1	743	764	755	-19.80	-13.00	0.656565656565657	11	4-10,761-755;11-19,753-745	1-3,764-762[UP5];x-x,754-754[BULt];20-21,744-743[UP3]	..(((((((((.(((((((...&...)))))))-)))))))))..	CAUAAAUAUAGUACAAGACGUG&AUUGUUUUGU-UUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8765_c0_g1_755_TPlot.pdf
TRINITY_DN8767_c0_g1:1163	si_a320	TRINITY_DN8767_c0_g1	1152	1172	1163	-24.40	-15.90	0.651639344262295	11.5	6-21,1167-1152	1-5,1172-1168[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGUGGGAAAAUCAUGUAAAU&UUAUCCAUGAUUUUUUUAUUC	4	0.999999999796303	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN8767_c0_g1_1163_TPlot.pdf
TRINITY_DN8768_c0_g2:288	si_s75	TRINITY_DN8768_c0_g2	277	297	288	-24.00	-16.70	0.695833333333333	9.5	1-3,297-295;5-13,293-285;15-21,283-277	4-4,294-294[SIL];14-14,284-284[SIL]	(((((((.(((((((((.(((&))).))))))))).)))))))	AGAGGGGUGGGGAGAGAUGUA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8768_c0_g2_288_TPlot.pdf
TRINITY_DN876_c1_g1:1682	si_a451	TRINITY_DN876_c1_g1	1671	1691	1682	-23.60	-18.70	0.792372881355932	7	2-6,1690-1686;8-21,1684-1671	1-1,1691-1691[UP5];7-7,1685-1685[SIL]	((((((((((((((.(((((.&.))))).))))))))))))))	UGUAUGUAACGAUAUUUGUCA&AGAUAAUUGUUGUUAUAUAUA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN876_c1_g1_1682_TPlot.pdf
TRINITY_DN876_c4_g1:332	si_a441	TRINITY_DN876_c4_g1	319	341	332	-29.30	-19.30	0.658703071672355	7	1-9,341-333;11-13,331-329;14-20,326-320	10-10,332-332[SIL];x-x,328-327[BULt];21-21,319-319[UP3]	.(((((((..(((.(((((((((&))))))))).)))--))))))).	UACAAUUAAUUCUGAUAUCUAGC&GUUGGAUAUGAGA--UAAUUGUU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a441_TRINITY_DN876_c4_g1_332_TPlot.pdf
TRINITY_DN876_c4_g1:333	si_a440	TRINITY_DN876_c4_g1	320	342	333	-30.80	-21.40	0.694805194805195	6	1-10,342-333;12-14,331-329;15-21,326-320	11-11,332-332[SIL];x-x,328-327[BULt]	(((((((..(((.((((((((((&)))))))))).)))--)))))))	ACAAUUAAUUCUGAUAUCUAGCG&CGUUGGAUAUGAGA--UAAUUGU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a440_TRINITY_DN876_c4_g1_333_TPlot.pdf
TRINITY_DN876_c5_g1:62	si_s679	TRINITY_DN876_c5_g1	51	70	62	-25.20	-16.50	0.654761904761905	6.5	1-8,70-63;10-15,62-57;17-21,55-51	9-9,x-x[BULq];16-16,56-56[SIL]	(((((.((((((-((((((((&)))))))).)))))).)))))	AUUAGUCUCGUG-UUCUGUGA&UUAUAGAAACAUGAGUUUAAU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN876_c5_g1_62_TPlot.pdf
TRINITY_DN8771_c0_g1:243	si_a638	TRINITY_DN8771_c0_g1	229	252	243	-24.40	-15.90	0.651639344262295	9	1-10,252-243;11-16,240-235;18-21,232-229	x-x,242-241[BULt];17-17,234-233[AILt]	((((..((((((..((((((((((&))))))))))--))))))-.))))	UGUGGAUACUCAUAAAGGAAUCGA&UCGAUUUUUU--UGAGUA-AUAUA	4	0.99999999839502	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN8771_c0_g1_243_TPlot.pdf
TRINITY_DN8771_c0_g1:2479	si_a410	TRINITY_DN8771_c0_g1	2468	2488	2479	-17.80	-11.90	0.668539325842697	11	1-14,2488-2475	15-21,2474-2468[UP3]	.......((((((((((((((&)))))))))))))).......	CAAAGGAAGAUAUGAGCAGAG&UUUUGUUUAUAUUUAAAUAAA	4	0.999999999999928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN8771_c0_g1_2479_TPlot.pdf
TRINITY_DN8771_c0_g1:2482	si_a407	TRINITY_DN8771_c0_g1	2471	2491	2482	-19.80	-15.50	0.782828282828283	11.5	3-17,2489-2475	1-2,2491-2490[UP5];18-21,2474-2471[UP3]	....(((((((((((((((..&..)))))))))))))))....	AGGAAGAUAUGAGCAGAGCUU&UUGUUUUGUUUAUAUUUAAAU	2	0.909472963291441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8771_c0_g1_2482_TPlot.pdf
TRINITY_DN8771_c0_g1:2483	si_a406	TRINITY_DN8771_c0_g1	2472	2492	2483	-19.80	-15.50	0.782828282828283	12.5	4-18,2489-2475	1-3,2492-2490[UP5];19-21,2474-2472[UP3]	...(((((((((((((((...&...)))))))))))))))...	GGAAGAUAUGAGCAGAGCUUC&AUUGUUUUGUUUAUAUUUAAA	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8771_c0_g1_2483_TPlot.pdf
TRINITY_DN8771_c0_g1:2564	si_a20	TRINITY_DN8771_c0_g1	2554	2574	2564	-26.70	-18.00	0.674157303370786	7	1-2,2574-2573;3-13,2571-2561;15-19,2560-2556	x-x,2572-2572[BULt];14-14,x-x[BULq];20-21,2555-2554[UP3]	..(((((-(((((((((((.((&))-))))))))))).)))))..	AUGAACU-AGAGUAAAUAGAGC&GC-CUAUUUAUUUUUAGUUCUA	2	0.999463218826073	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN8771_c0_g1_2564_TPlot.pdf
TRINITY_DN8771_c0_g1:2565	si_a19	TRINITY_DN8771_c0_g1	2555	2575	2565	-27.00	-18.10	0.67037037037037	6.5	2-3,2574-2573;4-14,2571-2561;16-20,2560-2556	1-1,2575-2575[UP5];x-x,2572-2572[BULt];15-15,x-x[BULq];21-21,2555-2555[UP3]	.(((((-(((((((((((.((.&.))-))))))))))).))))).	UGAACU-AGAGUAAAUAGAGCA&AGC-CUAUUUAUUUUUAGUUCU	4	0.999983337958052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN8771_c0_g1_2565_TPlot.pdf
TRINITY_DN8771_c0_g1:2566	si_a18	TRINITY_DN8771_c0_g1	2556	2576	2566	-26.30	-17.70	0.673003802281369	7.5	3-4,2574-2573;5-15,2571-2561;17-21,2560-2556	1-2,2576-2575[UP5];x-x,2572-2572[BULt];16-16,x-x[BULq]	(((((-(((((((((((.((..&..))-))))))))))).)))))	GAACU-AGAGUAAAUAGAGCAG&AAGC-CUAUUUAUUUUUAGUUC	3	0.999911492206605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN8771_c0_g1_2566_TPlot.pdf
TRINITY_DN8771_c0_g1:2740	si_a409	TRINITY_DN8771_c0_g1	2729	2750	2740	-19.50	-14.40	0.738461538461539	7	1-9,2750-2742;11-20,2739-2730	10-10,2741-2740[AILt];21-21,2729-2729[UP3]	.((((((((((..(((((((((&)))))))))-.)))))))))).	AUGUUUAGAUAAAAGACAAAAC&GUUUUGUUU-AUAUUUAAAUAA	2	0.990365583261362	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN8771_c0_g1_2740_TPlot.pdf
TRINITY_DN8771_c0_g1:2742	si_a408	TRINITY_DN8771_c0_g1	2730	2751	2742	-20.10	-14.40	0.716417910447761	7	2-10,2750-2742;12-21,2739-2730	1-1,2751-2751[UP5];11-11,2741-2740[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	UGUUUAGAUAAAAGACAAAACU&UGUUUUGUUU-AUAUUUAAAUA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN8771_c0_g1_2742_TPlot.pdf
TRINITY_DN8771_c0_g1:2743	si_a407	TRINITY_DN8771_c0_g1	2731	2752	2743	-19.80	-13.30	0.671717171717172	9	3-11,2750-2742;13-21,2739-2731	1-2,2752-2751[UP5];12-12,2741-2740[AILt]	(((((((((..(((((((((..&..)))))))))-.)))))))))	GUUUAGAUAAAAGACAAAACUG&UUGUUUUGUUU-AUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8771_c0_g1_2743_TPlot.pdf
TRINITY_DN8771_c0_g1:2820	si_s8	TRINITY_DN8771_c0_g1	2808	2829	2820	-21.30	-14.30	0.671361502347418	9	3-11,2827-2819;14-21,2815-2808	1-2,2829-2828[UP5];12-13,2818-2816[AILt]	((((((((...(((((((((..&..)))))))))-..))))))))	AAUAUAGUUAUUAGUAAGUAGA&AUUACUUAUUA-UUACUAUAUU	3	0.999995664853904	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN8771_c0_g1_2820_TPlot.pdf
TRINITY_DN8773_c0_g1:483	si_s76	TRINITY_DN8773_c0_g1	471	492	483	-23.60	-15.50	0.656779661016949	10	1-5,492-488;8-16,485-477;18-21,474-471	6-7,487-486[SIL];17-17,476-475[AILt]	((((..(((((((((..(((((&)))))..)))))))))-.))))	AAGAUCAGGAGAGGAUCGGAAU&AUUUUUUUUCUUUCCU-UUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8773_c0_g1_483_TPlot.pdf
TRINITY_DN8773_c0_g1:485	si_s74	TRINITY_DN8773_c0_g1	473	494	485	-25.00	-17.50	0.7	10.5	1-7,494-488;10-18,485-477;20-21,474-473	8-9,487-486[SIL];19-19,476-475[AILt]	((..(((((((((..(((((((&)))))))..)))))))))-.))	GAUCAGGAGAGGAUCGGAAUGG&CUAUUUUUUUUCUUUCCU-UUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8773_c0_g1_485_TPlot.pdf
TRINITY_DN8773_c0_g1:495	si_a324	TRINITY_DN8773_c0_g1	485	504	495	-27.50	-19.60	0.712727272727273	8	1-12,504-493;14-18,492-488	13-13,x-x[BULq];19-21,487-485[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	AUCGGAAU-GGGAGAUCAUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.976367072260134	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN8773_c0_g1_495_TPlot.pdf
TRINITY_DN8773_c0_g1:631	si_a652	TRINITY_DN8773_c0_g1	622	640	631	-31.90	-21.60	0.677115987460815	7	3-13,638-628;16-20,627-623	1-2,640-639[UP5];14-15,x-x[BULq];21-21,622-622[UP3]	.(((((--(((((((((((..&..)))))))))))..))))).	AAGGCA--UCCUGAUAUAUGG&UAAUAUAUCGGGAAAUGCCUA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a652_TRINITY_DN8773_c0_g1_631_TPlot.pdf
TRINITY_DN8773_c0_g1:771	si_a501	TRINITY_DN8773_c0_g1	759	780	771	-33.50	-23.50	0.701492537313433	5	1-14,780-767;17-19,763-761	15-16,766-764[AILt];20-21,760-759[UP3]	..(((...((((((((((((((&))))))))))))))-..)))..	UACCAUUUGAAGACGAAAAACG&CGUUUUUCGUCUUC-CUUGGAA	3	0.999891632392592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN8773_c0_g1_771_TPlot.pdf
TRINITY_DN8773_c0_g1:772	si_a500	TRINITY_DN8773_c0_g1	760	781	772	-34.40	-24.90	0.723837209302326	4	1-15,781-767;18-20,763-761	16-17,766-764[AILt];21-21,760-760[UP3]	.(((...(((((((((((((((&)))))))))))))))-..))).	ACCAUUUGAAGACGAAAAACGA&UCGUUUUUCGUCUUC-CUUGGA	3	0.984860972086093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN8773_c0_g1_772_TPlot.pdf
TRINITY_DN8773_c0_g1:773	si_a499	TRINITY_DN8773_c0_g1	761	782	773	-35.20	-28.40	0.806818181818182	3	1-16,782-767;19-21,763-761	17-18,766-764[AILt]	(((...((((((((((((((((&))))))))))))))))-..)))	CCAUUUGAAGACGAAAAACGAC&GUCGUUUUUCGUCUUC-CUUGG	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN8773_c0_g1_773_TPlot.pdf
TRINITY_DN8773_c0_g1:774	si_a498	TRINITY_DN8773_c0_g1	763	783	774	-33.50	-25.80	0.770149253731343	5	2-17,782-767	1-1,783-783[UP5];18-21,766-763[UP3]	....((((((((((((((((.&.))))))))))))))))....	AUUUGAAGACGAAAAACGACG&UGUCGUUUUUCGUCUUCCUUG	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN8773_c0_g1_774_TPlot.pdf
TRINITY_DN8773_c0_g1:775	si_a497	TRINITY_DN8773_c0_g1	764	784	775	-32.00	-25.80	0.80625	6	3-18,782-767	1-2,784-783[UP5];19-21,766-764[UP3]	...((((((((((((((((..&..))))))))))))))))...	UUUGAAGACGAAAAACGACGA&AUGUCGUUUUUCGUCUUCCUU	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN8773_c0_g1_775_TPlot.pdf
TRINITY_DN8773_c0_g1:776	si_a496	TRINITY_DN8773_c0_g1	765	785	776	-32.40	-25.80	0.796296296296296	7	4-19,782-767	1-3,785-783[UP5];20-21,766-765[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGAAGACGAAAAACGACGAC&UAUGUCGUUUUUCGUCUUCCU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN8773_c0_g1_776_TPlot.pdf
TRINITY_DN8773_c0_g1:777	si_a495	TRINITY_DN8773_c0_g1	766	786	777	-31.90	-25.80	0.808777429467085	8	5-20,782-767	1-4,786-783[UP5];21-21,766-766[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGAAGACGAAAAACGACGACA&AUAUGUCGUUUUUCGUCUUCC	3	0.305379412039806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN8773_c0_g1_777_TPlot.pdf
TRINITY_DN8773_c0_g1:778	si_a494	TRINITY_DN8773_c0_g1	767	787	778	-29.50	-25.80	0.874576271186441	9	6-21,782-767	1-5,787-783[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAAGACGAAAAACGACGACAC&AAUAUGUCGUUUUUCGUCUUC	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN8773_c0_g1_778_TPlot.pdf
TRINITY_DN8773_c0_g1:779	si_a493	TRINITY_DN8773_c0_g1	768	788	779	-29.50	-22.80	0.772881355932203	11	7-21,782-768	1-6,788-783[UP5]	(((((((((((((((......&......)))))))))))))))	AAGACGAAAAACGACGACACG&GAAUAUGUCGUUUUUCGUCUU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN8773_c0_g1_779_TPlot.pdf
TRINITY_DN8774_c0_g1:1065	si_s160	TRINITY_DN8774_c0_g1	1054	1074	1065	-40.60	-26.70	0.657635467980295	8.5	2-8,1073-1067;10-17,1065-1058	1-1,1074-1074[UP5];9-9,1066-1066[SIL];18-21,1057-1054[UP3]	....((((((((.(((((((.&.))))))).))))))))....	UCUUCCUCUGGCGAUGAAUCA&AGGUUCAUGGCCAGGGGUAAA	3	0.996329948240998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s160_TRINITY_DN8774_c0_g1_1065_TPlot.pdf
TRINITY_DN8774_c0_g1:733	si_s551	TRINITY_DN8774_c0_g1	723	743	733	-21.30	-14.10	0.661971830985915	6	1-5,743-739;6-13,737-730;15-21,729-723	x-x,738-738[BULt];14-14,x-x[BULq]	(((((((-((((((((.(((((&)))))-)))))))).)))))))	GGAAAUG-UGAUUCUGCUUUUG&CAAAA-UAGAAUUAAUAUUUUC	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s551_TRINITY_DN8774_c0_g1_733_TPlot.pdf
TRINITY_DN8774_c0_g2:209	si_a769	TRINITY_DN8774_c0_g2	199	218	209	-26.70	-17.40	0.651685393258427	8.5	4-12,215-207;14-20,206-200	1-3,218-216[UP5];13-13,x-x[BULq];21-21,199-199[UP3]	.(((((((-(((((((((...&...))))))))).))))))).	UGGAGUUG-AUUAAUCAAUGG&UUUUUGAUUGAUUCAACUCUU	3	0.999967176608486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a769_TRINITY_DN8774_c0_g2_209_TPlot.pdf
TRINITY_DN8774_c0_g2:210	si_a768	TRINITY_DN8774_c0_g2	200	221	210	-28.40	-18.70	0.658450704225352	7.5	1-4,221-218;5-13,215-207;15-21,206-200	x-x,217-216[BULt];14-14,x-x[BULq]	(((((((-(((((((((..((((&))))--))))))))).)))))))	GGAGUUG-AUUAAUCAAUGGAAC&GUUU--UUGAUUGAUUCAACUCU	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN8774_c0_g2_210_TPlot.pdf
TRINITY_DN8778_c0_g1:1607	si_s250	TRINITY_DN8778_c0_g1	1596	1616	1607	-33.30	-21.90	0.657657657657658	9	1-15,1616-1602	16-21,1601-1596[UP3]	......(((((((((((((((&)))))))))))))))......	CUAUACAUGUCGGGAGAUGUU&GGCAUUUCCCGAUAUAUUACU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s250_TRINITY_DN8778_c0_g1_1607_TPlot.pdf
TRINITY_DN877_c0_g1:3492	si_s84	TRINITY_DN877_c0_g1	3475	3501	3492	-32.30	-24.00	0.743034055727554	18	1-12,3501-3490;13-20,3483-3476	x-x,3489-3484[BULt];21-21,3475-3475[UP3]	.((((((((......((((((((((((&))))))))))))------)))))))).	GGAGGAGGACUCAGCAGAGGGGAGGGA&UCUUUCCUUUCU------UCUUCUUCG	4	0.999947062853178	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN877_c0_g1_3492_TPlot.pdf
TRINITY_DN877_c0_g1:3497	si_s79	TRINITY_DN877_c0_g1	3486	3506	3497	-26.20	-17.10	0.652671755725191	12	5-17,3502-3490;19-20,3488-3487	1-4,3506-3503[UP5];18-18,3489-3489[SIL];21-21,3486-3486[UP3]	.((.(((((((((((((....&....))))))))))))).)).	CAGCAGAGGGGAGGGAAUUCU&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN877_c0_g1_3497_TPlot.pdf
TRINITY_DN877_c0_g1:3498	si_s78	TRINITY_DN877_c0_g1	3487	3507	3498	-26.20	-17.10	0.652671755725191	13	6-18,3502-3490;20-21,3488-3487	1-5,3507-3503[UP5];19-19,3489-3489[SIL]	((.(((((((((((((.....&.....))))))))))))).))	AGCAGAGGGGAGGGAAUUCUG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN877_c0_g1_3498_TPlot.pdf
TRINITY_DN877_c0_g1:3501	si_s75	TRINITY_DN877_c0_g1	3490	3510	3501	-24.00	-16.20	0.675	17.5	9-21,3502-3490	1-8,3510-3503[UP5]	(((((((((((((........&........)))))))))))))	AGAGGGGAGGGAAUUCUGGCA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN877_c0_g1_3501_TPlot.pdf
TRINITY_DN877_c0_g1:3818	si_a741	TRINITY_DN877_c0_g1	3806	3827	3818	-42.60	-28.20	0.661971830985915	11	4-12,3824-3816;14-14,3813-3813;16-21,3811-3806	1-3,3827-3825[UP5];13-13,3815-3814[AILt];15-15,3812-3812[SIL]	((((((.(..(((((((((...&...)))))))))-.).))))))	GAGGUUGACGGGCUGGGGGCAG&UUACCCCUGGCC-AUGAACCUC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a741_TRINITY_DN877_c0_g1_3818_TPlot.pdf
TRINITY_DN877_c0_g1:3880	si_s793	TRINITY_DN877_c0_g1	3868	3889	3880	-30.50	-20.50	0.672131147540984	9.5	2-10,3888-3880;12-15,3877-3874;17-21,3872-3868	1-1,3889-3889[UP5];11-11,3879-3878[AILt];16-16,3873-3873[SIL]	(((((.((((..(((((((((.&.)))))))))-.)))).)))))	GGAGGCGAAAGCGCGGGCUUGG&ACAAGCUCGU-AUUUUAUCUUC	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN877_c0_g1_3880_TPlot.pdf
TRINITY_DN877_c0_g1:3979	si_a669	TRINITY_DN877_c0_g1	3965	3988	3979	-32.20	-21.54	0.668944099378882	9	1-7,3988-3982;9-14,3980-3975;16-21,3970-3965	8-8,3981-3981[SIL];15-15,3974-3971[AILt]	((((((....((((((.(((((((&))))))).))))))---.))))))	CGUGGAAAAAGAGGAAGCGGUAGG&CCUAUUGAUUCCUU---AUUCACG	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a669_TRINITY_DN877_c0_g1_3979_TPlot.pdf
TRINITY_DN877_c0_g1:548	si_s797	TRINITY_DN877_c0_g1	537	558	548	-30.00	-19.66	0.655333333333333	15.5	1-4,558-555;11-21,547-537	5-10,554-548[AILt]	(((((((((((.......((((&))))-......)))))))))))	UGACGAAGAUGUUCUGGAGAGC&GCUC-GUAUUUUAUCUUCGUUA	4	0.999999997419751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN877_c0_g1_548_TPlot.pdf
TRINITY_DN877_c0_g1:6391	si_s278	TRINITY_DN877_c0_g1	6380	6398	6391	-35.10	-25.68	0.731623931623932	11	1-8,6398-6391;13-21,6388-6380	9-12,6390-6389[AILq]	(((((((((..--((((((((&))))))))....)))))))))	GGCUGGGCGGC--GUGUCGGU&AUCGACAUAAUACGCCUAGUC	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s278_TRINITY_DN877_c0_g1_6391_TPlot.pdf
TRINITY_DN877_c0_g1:6557	si_s811	TRINITY_DN877_c0_g1	6546	6566	6557	-26.40	-18.00	0.681818181818182	11.5	1-11,6566-6556;13-16,6554-6551	12-12,6555-6555[SIL];17-21,6550-6546[UP3]	.....((((.(((((((((((&))))))))))).)))).....	GUCGAAGGACGAGGUGGCGGA&UUCGUUACCUUUUCUUAAUAA	4	0.999920005932043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN877_c0_g1_6557_TPlot.pdf
TRINITY_DN877_c0_g1:6558	si_s810	TRINITY_DN877_c0_g1	6547	6567	6558	-27.90	-21.20	0.759856630824373	9.5	1-12,6567-6556;14-17,6554-6551	13-13,6555-6555[SIL];18-21,6550-6547[UP3]	....((((.((((((((((((&)))))))))))).))))....	UCGAAGGACGAGGUGGCGGAG&CUUCGUUACCUUUUCUUAAUA	4	0.815973119144292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN877_c0_g1_6558_TPlot.pdf
TRINITY_DN877_c0_g1:6839	si_a11	TRINITY_DN877_c0_g1	6827	6848	6839	-28.80	-21.00	0.729166666666667	7.5	1-6,6848-6843;9-11,6840-6838;12-21,6836-6827	7-8,6842-6841[SIL];x-x,6837-6837[BULt]	((((((((((.(((..((((((&))))))..)))-))))))))))	GAGUAGAUAGCGCUCACUCUUC&GAAGAGAAAGC-CUAUUUAUUU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a11_TRINITY_DN877_c0_g1_6839_TPlot.pdf
TRINITY_DN877_c0_g1:6890	si_s4	TRINITY_DN877_c0_g1	6879	6898	6890	-21.60	-14.90	0.689814814814815	5	2-8,6897-6891;10-21,6890-6879	1-1,6898-6898[UP5];9-9,x-x[BULq]	((((((((((((-(((((((.&.))))))).))))))))))))	UGGUAAUGAUGA-UAAUAUAU&UUAUAUUACUUAUUAUUACUA	2	0.975496819466826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s4_TRINITY_DN877_c0_g1_6890_TPlot.pdf
TRINITY_DN877_c0_g1:7944	si_s691	TRINITY_DN877_c0_g1	7933	7954	7944	-26.20	-17.20	0.656488549618321	12	3-6,7952-7949;8-19,7946-7935	1-2,7954-7953[UP5];7-7,7948-7947[AILt];20-21,7934-7933[UP3]	..((((((((((((..((((..&..))))-.))))))))))))..	CGAGGUCGACUGAUGGGAACAU&GAGUUU-AAUUAGUCGAUUUAU	4	0.999086072865345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN877_c0_g1_7944_TPlot.pdf
TRINITY_DN8780_c0_g1:10386	si_a70	TRINITY_DN8780_c0_g1	10375	10395	10386	-23.90	-16.00	0.669456066945607	5.5	2-7,10394-10389;9-12,10387-10384;14-21,10382-10375	1-1,10395-10395[UP5];8-8,10388-10388[SIL];13-13,10383-10383[SIL]	((((((((.((((.((((((.&.)))))).)))).))))))))	AAUGAAGAUCAAUCUGAGAGU&UCUUUCAAAUUGUUUUUCAUU	3	0.999999999854796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8780_c0_g1_10386_TPlot.pdf
TRINITY_DN8780_c0_g1:14146	si_a627	TRINITY_DN8780_c0_g1	14135	14155	14146	-29.50	-20.90	0.708474576271186	8	1-2,14155-14154;4-17,14152-14139	3-3,14153-14153[SIL];18-21,14138-14135[UP3]	....((((((((((((((.((&)).))))))))))))))....	UUCUAAUCGACAUAGUGCCCC&GGCGUAUUAUGUCGAUUUUUU	3	0.974373770237452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a627_TRINITY_DN8780_c0_g1_14146_TPlot.pdf
TRINITY_DN8780_c0_g1:14487	si_a148	TRINITY_DN8780_c0_g1	14475	14496	14487	-30.30	-20.92	0.690429042904291	7	1-12,14496-14485;16-21,14480-14475	13-15,14484-14481[AILt]	((((((....((((((((((((&))))))))))))-...))))))	UUGGCCCCGCAAACAACGACGG&UCGUUGUUGUUU-UAAGGUCAA	4	0.998302313674975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN8780_c0_g1_14487_TPlot.pdf
TRINITY_DN8780_c0_g1:14677	si_a736	TRINITY_DN8780_c0_g1	14665	14687	14677	-40.20	-27.22	0.677114427860696	11	1-5,14687-14683;9-15,14678-14672;16-20,14670-14666	6-8,14682-14679[AILt];x-x,14671-14671[BULt];21-21,14665-14665[UP3]	.(((((.(((((((....(((((&)))))-...)))))))-))))).	CCAUGGCCCAGGGGAUCCAGGUG&CAUCU-UUACCCCUGG-CCAUGA	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a736_TRINITY_DN8780_c0_g1_14677_TPlot.pdf
TRINITY_DN8780_c0_g1:14865	si_s93	TRINITY_DN8780_c0_g1	14853	14874	14865	-34.80	-24.20	0.695402298850575	6	1-14,14874-14861;15-17,14859-14857;19-21,14855-14853	x-x,14860-14860[BULt];18-18,14856-14856[SIL]	(((.(((.((((((((((((((&))))))))))))))-))).)))	GGUGCGGCGGUGGAGAAGAAGA&UCUUCUUCUUCGCU-UCGGAUU	2	0.999449689418886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN8780_c0_g1_14865_TPlot.pdf
TRINITY_DN8780_c0_g1:14866	si_s92	TRINITY_DN8780_c0_g1	14854	14875	14866	-34.90	-24.60	0.70487106017192	5	1-15,14875-14861;16-18,14859-14857;20-21,14855-14854	x-x,14860-14860[BULt];19-19,14856-14856[SIL]	((.(((.(((((((((((((((&)))))))))))))))-))).))	GUGCGGCGGUGGAGAAGAAGAA&UUCUUCUUCUUCGCU-UCGGAU	2	0.998395044015175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN8780_c0_g1_14866_TPlot.pdf
TRINITY_DN8780_c0_g1:14867	si_s91	TRINITY_DN8780_c0_g1	14855	14876	14867	-34.70	-23.30	0.671469740634006	5.5	2-16,14875-14861;17-19,14859-14857;21-21,14855-14855	1-1,14876-14876[UP5];x-x,14860-14860[BULt];20-20,14856-14856[SIL]	(.(((.(((((((((((((((.&.)))))))))))))))-))).)	UGCGGCGGUGGAGAAGAAGAAU&UUUCUUCUUCUUCGCU-UCGGA	2	0.999999957087422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN8780_c0_g1_14867_TPlot.pdf
TRINITY_DN8780_c0_g1:14868	si_s90	TRINITY_DN8780_c0_g1	14856	14877	14868	-35.30	-23.20	0.657223796033994	7	3-17,14875-14861;18-20,14859-14857	1-2,14877-14876[UP5];x-x,14860-14860[BULt];21-21,14856-14856[UP3]	.(((.(((((((((((((((..&..)))))))))))))))-))).	GCGGCGGUGGAGAAGAAGAAUG&CUUUCUUCUUCUUCGCU-UCGG	2	0.999999999918017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN8780_c0_g1_14868_TPlot.pdf
TRINITY_DN8780_c0_g1:14869	si_s89	TRINITY_DN8780_c0_g1	14857	14878	14869	-35.30	-23.30	0.660056657223796	6	2-2,14877-14877;4-18,14875-14861;19-21,14859-14857	1-1,14878-14878[UP5];3-3,14876-14876[SIL];x-x,14860-14860[BULt]	(((.(((((((((((((((.(.&.).)))))))))))))))-)))	CGGCGGUGGAGAAGAAGAAUGA&CCUUUCUUCUUCUUCGCU-UCG	2	0.999999999648325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8780_c0_g1_14869_TPlot.pdf
TRINITY_DN8780_c0_g1:14871	si_s87	TRINITY_DN8780_c0_g1	14860	14890	14871	-32.90	-22.50	0.683890577507599	23	1-6,14890-14885;7-20,14874-14861	x-x,14884-14875[BULt];21-21,14860-14860[UP3]	.((((((((((((((..........((((((&))))))----------)))))))))))))).	CGGUGGAGAAGAAGAAUGAAUGAGUAAGGAG&UUCCUU----------UCUUCUUCUUCGCUU	2	0.999999999548927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8780_c0_g1_14871_TPlot.pdf
TRINITY_DN8780_c0_g1:14872	si_s86	TRINITY_DN8780_c0_g1	14861	14891	14872	-32.90	-22.90	0.696048632218845	23.5	2-7,14890-14885;8-21,14874-14861	1-1,14891-14891[UP5];x-x,14884-14875[BULt]	((((((((((((((..........((((((.&.))))))----------))))))))))))))	GGUGGAGAAGAAGAAUGAAUGAGUAAGGAGG&UUUCCUU----------UCUUCUUCUUCGCU	2	0.999999847269923	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN8780_c0_g1_14872_TPlot.pdf
TRINITY_DN8780_c0_g1:14873	si_s85	TRINITY_DN8780_c0_g1	14862	14892	14873	-33.80	-22.20	0.656804733727811	24	2-8,14891-14885;9-21,14874-14862	1-1,14892-14892[UP5];x-x,14884-14875[BULt]	(((((((((((((..........(((((((.&.)))))))----------)))))))))))))	GUGGAGAAGAAGAAUGAAUGAGUAAGGAGGA&CUUUCCUU----------UCUUCUUCUUCGC	2	0.999999999996483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8780_c0_g1_14873_TPlot.pdf
TRINITY_DN8780_c0_g1:14893	si_a320	TRINITY_DN8780_c0_g1	14881	14902	14893	-24.40	-18.20	0.745901639344262	6.5	1-8,14902-14895;10-15,14893-14888;16-21,14886-14881	9-9,14894-14894[SIL];x-x,14887-14887[BULt]	((((((.((((((.((((((((&)))))))).))))))-))))))	GAGUAAGGAGGAUGAUGGAUGA&UUAUCCAUGAUUUUU-UUAUUC	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN8780_c0_g1_14893_TPlot.pdf
TRINITY_DN8780_c0_g1:14894	si_a319	TRINITY_DN8780_c0_g1	14883	14903	14894	-22.40	-16.30	0.727678571428572	8	1-9,14903-14895;11-18,14893-14886	10-10,14894-14894[SIL];19-21,14885-14883[UP3]	...((((((((.(((((((((&))))))))).))))))))...	GUAAGGAGGAUGAUGGAUGAA&UUUAUCCAUGAUUUUUUUAUU	2	0.99748780294648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN8780_c0_g1_14894_TPlot.pdf
TRINITY_DN8780_c0_g1:14895	si_a318	TRINITY_DN8780_c0_g1	14884	14904	14895	-22.50	-17.60	0.782222222222222	7	1-10,14904-14895;12-19,14893-14886	11-11,14894-14894[SIL];20-21,14885-14884[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	UAAGGAGGAUGAUGGAUGAAU&AUUUAUCCAUGAUUUUUUUAU	2	0.871729576162224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN8780_c0_g1_14895_TPlot.pdf
TRINITY_DN8780_c0_g1:14896	si_a317	TRINITY_DN8780_c0_g1	14885	14905	14896	-24.30	-18.00	0.740740740740741	7	2-11,14904-14895;13-20,14893-14886	1-1,14905-14905[UP5];12-12,14894-14894[SIL];21-21,14885-14885[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	AAGGAGGAUGAUGGAUGAAUG&GAUUUAUCCAUGAUUUUUUUA	2	0.931156674356659	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a317_TRINITY_DN8780_c0_g1_14896_TPlot.pdf
TRINITY_DN8780_c0_g1:14897	si_a316	TRINITY_DN8780_c0_g1	14886	14906	14897	-26.30	-17.70	0.673003802281369	7	3-12,14904-14895;14-21,14893-14886	1-2,14906-14905[UP5];13-13,14894-14894[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGGAGGAUGAUGGAUGAAUGA&GGAUUUAUCCAUGAUUUUUUU	2	0.999661310754408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN8780_c0_g1_14897_TPlot.pdf
TRINITY_DN8780_c0_g1:5302	si_s302	TRINITY_DN8780_c0_g1	5291	5311	5302	-32.30	-21.48	0.665015479876161	6.5	2-4,5310-5308;6-12,5306-5300;16-21,5296-5291	1-1,5311-5311[UP5];5-5,5307-5307[SIL];13-15,5299-5297[SIL]	((((((...(((((((.(((.&.))).)))))))...))))))	GACGGAUACUUCGCAACUCCG&UGGAAUUGCGAAAAUUCUGUC	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s302_TRINITY_DN8780_c0_g1_5302_TPlot.pdf
TRINITY_DN8780_c0_g1:5318	si_a512	TRINITY_DN8780_c0_g1	5308	5327	5318	-37.80	-24.80	0.656084656084656	7	3-6,5325-5322;8-13,5320-5315;16-21,5313-5308	1-2,5327-5326[UP5];7-7,5321-5321[SIL];14-15,5314-5314[AILq]	((((((.-((((((.((((..&..)))).))))))..))))))	UCCGCCC-ACAUUCGAAGGCG&UUCCUUGGAAUGUAAGGCGGA	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN8780_c0_g1_5318_TPlot.pdf
TRINITY_DN8780_c0_g1:5397	si_s52	TRINITY_DN8780_c0_g1	5386	5411	5397	-31.30	-20.90	0.667731629392971	13	1-7,5411-5405;8-17,5399-5390;19-20,5388-5387	x-x,5404-5400[BULt];18-18,5389-5389[SIL];21-21,5386-5386[UP3]	.((.((((((((((.....(((((((&)))))))-----)))))))))).)).	UGUCGCUGGCUUGACCAUAAAUCCAA&UUGGAUU-----UCAAGUUAGCAACU	2	0.742472874525013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s52_TRINITY_DN8780_c0_g1_5397_TPlot.pdf
TRINITY_DN8780_c0_g1:5398	si_s51	TRINITY_DN8780_c0_g1	5387	5412	5398	-30.70	-20.50	0.667752442996743	13	2-8,5411-5405;9-18,5399-5390;20-21,5388-5387	1-1,5412-5412[UP5];x-x,5404-5400[BULt];19-19,5389-5389[SIL]	((.((((((((((.....(((((((.&.)))))))-----)))))))))).))	GUCGCUGGCUUGACCAUAAAUCCAAC&AUUGGAUU-----UCAAGUUAGCAAC	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s51_TRINITY_DN8780_c0_g1_5398_TPlot.pdf
TRINITY_DN8780_c0_g1:5405	si_s49	TRINITY_DN8780_c0_g1	5389	5414	5405	-29.30	-20.20	0.689419795221843	17	4-10,5411-5405;11-20,5399-5390	1-3,5414-5412[UP5];x-x,5404-5400[BULt];21-21,5389-5389[UP3]	.((((((((((.....(((((((...&...)))))))-----)))))))))).	CGCUGGCUUGACCAUAAAUCCAACAG&UAAUUGGAUU-----UCAAGUUAGCA	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN8780_c0_g1_5405_TPlot.pdf
TRINITY_DN8780_c0_g1:5406	si_s48	TRINITY_DN8780_c0_g1	5390	5415	5406	-28.80	-19.80	0.6875	18	5-11,5411-5405;12-21,5399-5390	1-4,5415-5412[UP5];x-x,5404-5400[BULt]	((((((((((.....(((((((....&....)))))))-----))))))))))	GCUGGCUUGACCAUAAAUCCAACAGG&AUAAUUGGAUU-----UCAAGUUAGC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s48_TRINITY_DN8780_c0_g1_5406_TPlot.pdf
TRINITY_DN8780_c0_g1:5524	si_a600	TRINITY_DN8780_c0_g1	5513	5532	5524	-29.70	-19.80	0.666666666666667	8.5	1-5,5532-5528;8-8,5525-5525;11-21,5523-5513	6-7,5527-5526[SIL];9-10,5524-5524[AILq]	(((((((((((.-(..(((((&)))))..)..)))))))))))	GUUGGAAUUGCU-AUCUUCUG&CAGAAUUUUCGCAAUUCCAAU	2	0.919066064177436	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a600_TRINITY_DN8780_c0_g1_5524_TPlot.pdf
TRINITY_DN8780_c0_g1:7261	si_a489	TRINITY_DN8780_c0_g1	7249	7270	7261	-27.70	-19.50	0.703971119133574	12	5-10,7266-7261;11-20,7259-7250	1-4,7270-7267[UP5];x-x,7260-7260[BULt];21-21,7249-7249[UP3]	.((((((((((.((((((....&....))))))-)))))))))).	GGAGAGACGACAAUGUUCACAA&UAUAGAAUAU-GUCGUUUUUCG	4	0.862160658886015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a489_TRINITY_DN8780_c0_g1_7261_TPlot.pdf
TRINITY_DN8780_c0_g1:8127	si_a302	TRINITY_DN8780_c0_g1	8116	8136	8127	-28.20	-19.70	0.698581560283688	10	3-16,8134-8121	1-2,8136-8135[UP5];17-21,8120-8116[UP3]	.....((((((((((((((..&..)))))))))))))).....	GUCAGCCGGGUGAAUCUUUGA&AAAAAGAUUCGCUUGGAUUUA	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN8780_c0_g1_8127_TPlot.pdf
TRINITY_DN8780_c0_g1:8397	si_a791	TRINITY_DN8780_c0_g1	8385	8406	8397	-26.50	-18.40	0.694339622641509	7	2-15,8405-8392;16-20,8390-8386	1-1,8406-8406[UP5];x-x,8391-8391[BULt];21-21,8385-8385[UP3]	.(((((.((((((((((((((.&.))))))))))))))-))))).	CGGUUGCGGAAGUGGAAGAAUU&UAUUUUUCUAUUUUC-CAAUCC	4	0.999591415460171	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN8780_c0_g1_8397_TPlot.pdf
TRINITY_DN8780_c0_g1:8905	si_a632	TRINITY_DN8780_c0_g1	8889	8914	8905	-26.10	-17.80	0.681992337164751	19	4-11,8911-8904;12-21,8898-8889	1-3,8914-8912[UP5];x-x,8903-8899[BULt]	((((((((((.....((((((((...&...))))))))-----))))))))))	GCUCAAGAAGCCAAGGUCGGCAUCUG&AUUAUGUCGAU-----UUUUUUGAGU	4	0.999995269886044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN8780_c0_g1_8905_TPlot.pdf
TRINITY_DN8781_c0_g1:146	si_a300	TRINITY_DN8781_c0_g1	135	155	146	-28.20	-19.60	0.695035460992908	17	9-21,147-135	1-8,155-148[UP5]	(((((((((((((........&........)))))))))))))	GGUCCAAGCGAGUAAUGAAAC&UAAAAAAGAUUCGCUUGGAUU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a300_TRINITY_DN8781_c0_g1_146_TPlot.pdf
TRINITY_DN8783_c0_g1:1388	si_s68	TRINITY_DN8783_c0_g1	1376	1397	1388	-23.10	-15.10	0.653679653679654	8	4-16,1394-1382;17-20,1380-1377	1-3,1397-1395[UP5];x-x,1381-1381[BULt];21-21,1376-1376[UP3]	.((((.(((((((((((((...&...)))))))))))))-)))).	CAAGAGGAAGAAAUAGAAGAAA&CAACUUCUAUUUUUUU-UCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8783_c0_g1_1388_TPlot.pdf
TRINITY_DN8783_c0_g1:1389	si_s81	TRINITY_DN8783_c0_g1	1378	1398	1389	-28.90	-20.00	0.69204152249135	5.5	1-8,1398-1391;11-21,1388-1378	9-10,1390-1389[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	AGAGGAAGAAAUAGAAGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN8783_c0_g1_1389_TPlot.pdf
TRINITY_DN8783_c0_g1:1451	si_s68	TRINITY_DN8783_c0_g1	1439	1462	1451	-23.10	-15.20	0.658008658008658	7	1-4,1462-1459;5-17,1456-1444;18-20,1442-1440	x-x,1458-1457[BULt];x-x,1443-1443[BULt];21-21,1439-1439[UP3]	.(((.(((((((((((((..((((&))))--)))))))))))))-))).	CAAGCAGAAGAAAUAGAAAUGUUG&CAAC--UUCUAUUUUUUUU-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8783_c0_g1_1451_TPlot.pdf
TRINITY_DN8783_c0_g1:1692	si_a316	TRINITY_DN8783_c0_g1	1681	1701	1692	-26.30	-18.90	0.718631178707224	5	2-10,1700-1692;12-21,1690-1681	1-1,1701-1701[UP5];11-11,1691-1691[SIL]	((((((((((.(((((((((.&.))))))))).))))))))))	AAAGAAAUUAAGGAUAGAUCG&GGAUUUAUCCAUGAUUUUUUU	4	0.996123391397119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN8783_c0_g1_1692_TPlot.pdf
TRINITY_DN8783_c0_g1:1750	si_s85	TRINITY_DN8783_c0_g1	1737	1759	1750	-33.80	-22.50	0.665680473372781	6	1-14,1759-1746;15-17,1743-1741;20-21,1738-1737	x-x,1745-1744[BULt];18-19,1740-1739[SIL]	((..(((..((((((((((((((&))))))))))))))--)))..))	GCCCAGACCAGAAGAAGGGGAAG&CUUUCCUUUCUUCU--UCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8783_c0_g1_1750_TPlot.pdf
TRINITY_DN8783_c0_g1:1751	si_s84	TRINITY_DN8783_c0_g1	1738	1760	1751	-32.30	-22.00	0.681114551083591	7	1-15,1760-1746;16-18,1743-1741	x-x,1745-1744[BULt];19-21,1740-1738[UP3]	...(((..(((((((((((((((&)))))))))))))))--)))...	CCCAGACCAGAAGAAGGGGAAGA&UCUUUCCUUUCUUCU--UCUUCG	2	0.999999998838419	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8783_c0_g1_1751_TPlot.pdf
TRINITY_DN8783_c0_g1:1752	si_s83	TRINITY_DN8783_c0_g1	1739	1761	1752	-30.90	-22.40	0.724919093851133	6.5	1-16,1761-1746;17-19,1743-1741	x-x,1745-1744[BULt];20-21,1740-1739[UP3]	..(((..((((((((((((((((&))))))))))))))))--)))..	CCAGACCAGAAGAAGGGGAAGAG&UUCUUUCCUUUCUUCU--UCUUC	2	0.999998582666172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8783_c0_g1_1752_TPlot.pdf
TRINITY_DN8783_c0_g1:1753	si_s82	TRINITY_DN8783_c0_g1	1740	1762	1753	-28.90	-22.50	0.778546712802768	7	2-17,1761-1746;18-20,1743-1741	1-1,1762-1762[UP5];x-x,1745-1744[BULt];21-21,1740-1740[UP3]	.(((..((((((((((((((((.&.))))))))))))))))--))).	CAGACCAGAAGAAGGGGAAGAGC&UUUCUUUCCUUUCUUCU--UCUU	3	0.999976258142249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN8783_c0_g1_1753_TPlot.pdf
TRINITY_DN8783_c0_g1:1755	si_s80	TRINITY_DN8783_c0_g1	1744	1764	1755	-28.20	-21.80	0.773049645390071	10	4-19,1761-1746	1-3,1764-1762[UP5];20-21,1745-1744[UP3]	..((((((((((((((((...&...))))))))))))))))..	CCAGAAGAAGGGGAAGAGCAA&UUUUUCUUUCCUUUCUUCUUC	3	0.999998487030107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN8783_c0_g1_1755_TPlot.pdf
TRINITY_DN8783_c0_g1:1756	si_s79	TRINITY_DN8783_c0_g1	1745	1765	1756	-26.20	-21.80	0.83206106870229	10.5	5-20,1761-1746	1-4,1765-1762[UP5];21-21,1745-1745[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAGAAGAAGGGGAAGAGCAAU&UUUUUUCUUUCCUUUCUUCUU	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8783_c0_g1_1756_TPlot.pdf
TRINITY_DN8783_c0_g1:1757	si_s78	TRINITY_DN8783_c0_g1	1746	1766	1757	-26.20	-21.80	0.83206106870229	11.5	6-21,1761-1746	1-5,1766-1762[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGAAGAAGGGGAAGAGCAAUU&UUUUUUUCUUUCCUUUCUUCU	3	0.998333550718965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8783_c0_g1_1757_TPlot.pdf
TRINITY_DN8783_c0_g1:1758	si_s77	TRINITY_DN8783_c0_g1	1747	1767	1758	-25.50	-20.60	0.807843137254902	13.5	7-21,1761-1747	1-6,1767-1762[UP5]	(((((((((((((((......&......)))))))))))))))	GAAGAAGGGGAAGAGCAAUUA&UUUUUUUUCUUUCCUUUCUUC	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8783_c0_g1_1758_TPlot.pdf
TRINITY_DN8783_c0_g1:1760	si_s75	TRINITY_DN8783_c0_g1	1749	1769	1760	-24.00	-16.50	0.6875	17	9-21,1761-1749	1-8,1769-1762[UP5]	(((((((((((((........&........)))))))))))))	AGAAGGGGAAGAGCAAUUAGA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8783_c0_g1_1760_TPlot.pdf
TRINITY_DN8783_c0_g1:1767	si_a67	TRINITY_DN8783_c0_g1	1756	1778	1767	-27.20	-17.78	0.653676470588235	11	1-5,1778-1774;8-9,1769-1768;11-21,1766-1756	6-7,1773-1770[AILt];10-10,1767-1767[SIL]	(((((((((((.((....(((((&)))))--..)).)))))))))))	GAAGAGCAAUUAGACUUUGAAGC&GCUUC--UUUCAAAUUGUUUUUC	2	0.9999999976387	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8783_c0_g1_1767_TPlot.pdf
TRINITY_DN8783_c0_g1:1880	si_s78	TRINITY_DN8783_c0_g1	1863	1889	1880	-26.20	-19.70	0.751908396946565	9.5	1-14,1889-1876;15-20,1869-1864	x-x,1875-1870[BULt];21-21,1863-1863[UP3]	.((((((......((((((((((((((&))))))))))))))------)))))).	UGAGGAAAAAAGUAGGAAGGAAAAAGA&UUUUUUUCUUUCCU------UUCUUCU	3	0.999999999987464	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8783_c0_g1_1880_TPlot.pdf
TRINITY_DN8783_c0_g1:1881	si_s77	TRINITY_DN8783_c0_g1	1864	1890	1881	-25.50	-19.70	0.772549019607843	9	1-15,1890-1876;16-21,1869-1864	x-x,1875-1870[BULt]	((((((......(((((((((((((((&)))))))))))))))------))))))	GAGGAAAAAAGUAGGAAGGAAAAAGAG&UUUUUUUUCUUUCCU------UUCUUC	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8783_c0_g1_1881_TPlot.pdf
TRINITY_DN8783_c0_g1:2577	si_s528	TRINITY_DN8783_c0_g1	2566	2586	2577	-29.40	-19.30	0.656462585034014	14	8-21,2579-2566	1-7,2586-2580[UP5]	((((((((((((((.......&.......))))))))))))))	CGGGUCGAAAAUGAACGUCAA&UUCGAAAUCAUUUUUGAUCCG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s528_TRINITY_DN8783_c0_g1_2577_TPlot.pdf
TRINITY_DN8783_c0_g1:2601	si_a774	TRINITY_DN8783_c0_g1	2590	2609	2601	-29.20	-19.00	0.650684931506849	8.5	1-4,2609-2606;6-10,2605-2601;12-21,2599-2590	5-5,x-x[BULq];11-11,2600-2600[SIL]	((((((((((.(((((-((((&)))).))))).))))))))))	GGUAGAGGAGAUGAGU-GGUC&GAUUGAUUCAACUCUUCUAUU	3	0.999441484726442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN8783_c0_g1_2601_TPlot.pdf
TRINITY_DN8784_c0_g2:1411	si_a77	TRINITY_DN8784_c0_g2	1400	1420	1411	-22.20	-17.70	0.797297297297297	5	3-18,1418-1403;20-21,1401-1400	1-2,1420-1419[UP5];19-19,1402-1402[SIL]	((.((((((((((((((((..&..)))))))))))))))).))	UCCUGAUGAUGAAAAACAAGA&AAUUGUUUUUCAUUAUUAAGA	4	0.620989312237575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN8784_c0_g2_1411_TPlot.pdf
TRINITY_DN8784_c0_g3:173	si_a406	TRINITY_DN8784_c0_g3	159	182	173	-19.80	-14.40	0.727272727272727	6.5	2-14,181-169;15-20,165-160	1-1,182-182[UP5];x-x,168-166[BULt];21-21,159-159[UP3]	.((((((...(((((((((((((.&.)))))))))))))---)))))).	CUUAAAUUACGUAAACAAGACAAA&AUUGUUUUGUUUAU---AUUUAAA	2	0.999925808258036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8784_c0_g3_173_TPlot.pdf
TRINITY_DN8786_c0_g1:1040	si_s690	TRINITY_DN8786_c0_g1	1029	1049	1040	-26.70	-18.20	0.681647940074906	11.5	4-20,1046-1030	1-3,1049-1047[UP5];21-21,1029-1029[UP3]	.(((((((((((((((((...&...))))))))))))))))).	GGAGUUGACUGAUUGGAUAUG&UGAGUUUAAUUAGUCGAUUUA	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s690_TRINITY_DN8786_c0_g1_1040_TPlot.pdf
TRINITY_DN8786_c0_g1:1505	si_a762	TRINITY_DN8786_c0_g1	1494	1514	1505	-29.70	-21.50	0.723905723905724	5	1-15,1514-1500;18-19,1497-1496	16-17,1499-1498[SIL];20-21,1495-1494[UP3]	..((..(((((((((((((((&)))))))))))))))..))..	AUGUGCGUCAAAAACCCAAAG&CUUUGGGUUUUUGAUUGAUUC	2	0.902453864837061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN8786_c0_g1_1505_TPlot.pdf
TRINITY_DN8786_c0_g1:1506	si_a761	TRINITY_DN8786_c0_g1	1495	1515	1506	-30.10	-21.90	0.727574750830565	5	2-16,1514-1500;19-20,1497-1496	1-1,1515-1515[UP5];17-18,1499-1498[SIL];21-21,1495-1495[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	UGUGCGUCAAAAACCCAAAGA&CCUUUGGGUUUUUGAUUGAUU	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN8786_c0_g1_1506_TPlot.pdf
TRINITY_DN8786_c0_g1:1508	si_a759	TRINITY_DN8786_c0_g1	1497	1517	1508	-32.60	-21.80	0.668711656441718	8.5	4-18,1514-1500	1-3,1517-1515[UP5];19-21,1499-1497[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGCGUCAAAAACCCAAAGACC&CUCCUUUGGGUUUUUGAUUGA	3	0.999996237632989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN8786_c0_g1_1508_TPlot.pdf
TRINITY_DN878_c0_g1:1575	si_s94	TRINITY_DN878_c0_g1	1562	1584	1575	-35.50	-24.30	0.684507042253521	4.5	1-13,1584-1572;14-15,1570-1569;18-21,1565-1562	x-x,1571-1571[BULt];16-17,1568-1566[AILt]	((((...((.(((((((((((((&)))))))))))))-))-..))))	CAGUGAAGAUAGCGAAGAAGAAG&CUUCUUCUUCGCU-UC-GGAUUG	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN878_c0_g1_1575_TPlot.pdf
TRINITY_DN878_c0_g1:1576	si_s93	TRINITY_DN878_c0_g1	1564	1585	1576	-34.80	-23.60	0.67816091954023	6	1-14,1585-1572;15-16,1570-1569	x-x,1571-1571[BULt];17-21,1568-1564[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	GUGAAGAUAGCGAAGAAGAAGA&UCUUCUUCUUCGCU-UCGGAUU	3	0.999999988491806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN878_c0_g1_1576_TPlot.pdf
TRINITY_DN878_c0_g1:1579	si_s90	TRINITY_DN878_c0_g1	1567	1588	1579	-35.30	-24.40	0.691218130311615	6	3-17,1586-1572;18-19,1570-1569	1-2,1588-1587[UP5];x-x,1571-1571[BULt];20-21,1568-1567[UP3]	..((.(((((((((((((((..&..)))))))))))))))-))..	AAGAUAGCGAAGAAGAAGAACA&CUUUCUUCUUCUUCGCU-UCGG	2	0.999969339466232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN878_c0_g1_1579_TPlot.pdf
TRINITY_DN878_c0_g1:1580	si_s89	TRINITY_DN878_c0_g1	1568	1589	1580	-35.30	-24.40	0.691218130311615	7	4-18,1586-1572;19-20,1570-1569	1-3,1589-1587[UP5];x-x,1571-1571[BULt];21-21,1568-1568[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	AGAUAGCGAAGAAGAAGAACAA&CCUUUCUUCUUCUUCGCU-UCG	3	0.999999994667647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN878_c0_g1_1580_TPlot.pdf
TRINITY_DN878_c0_g1:1581	si_s88	TRINITY_DN878_c0_g1	1569	1590	1581	-34.80	-24.00	0.689655172413793	8	5-19,1586-1572;20-21,1570-1569	1-4,1590-1587[UP5];x-x,1571-1571[BULt]	((.(((((((((((((((....&....)))))))))))))))-))	GAUAGCGAAGAAGAAGAACAAA&UCCUUUCUUCUUCUUCGCU-UC	2	0.999998824039467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN878_c0_g1_1581_TPlot.pdf
TRINITY_DN878_c0_g1:1582	si_s87	TRINITY_DN878_c0_g1	1571	1591	1582	-32.90	-23.50	0.714285714285714	10	6-20,1586-1572	1-5,1591-1587[UP5];21-21,1571-1571[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAGCGAAGAAGAAGAACAAAC&UUCCUUUCUUCUUCUUCGCUU	2	0.999984917339103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN878_c0_g1_1582_TPlot.pdf
TRINITY_DN878_c0_g1:1583	si_s86	TRINITY_DN878_c0_g1	1572	1592	1583	-32.90	-23.50	0.714285714285714	11	7-21,1586-1572	1-6,1592-1587[UP5]	(((((((((((((((......&......)))))))))))))))	AGCGAAGAAGAAGAACAAACC&UUUCCUUUCUUCUUCUUCGCU	2	0.999963954709493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN878_c0_g1_1583_TPlot.pdf
TRINITY_DN878_c0_g1:1584	si_s85	TRINITY_DN878_c0_g1	1573	1593	1584	-33.80	-22.40	0.662721893491124	13	8-21,1586-1573	1-7,1593-1587[UP5]	((((((((((((((.......&.......))))))))))))))	GCGAAGAAGAAGAACAAACCA&CUUUCCUUUCUUCUUCUUCGC	2	0.999999999940682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN878_c0_g1_1584_TPlot.pdf
TRINITY_DN8790_c0_g1:2240	si_a319	TRINITY_DN8790_c0_g1	2229	2249	2240	-22.40	-15.50	0.691964285714286	10	4-18,2246-2232	1-3,2249-2247[UP5];19-21,2231-2229[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCCGAAGAAAUUAUGGAUUUG&UUUAUCCAUGAUUUUUUUAUU	3	0.999999997940772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN8790_c0_g1_2240_TPlot.pdf
TRINITY_DN8790_c0_g1:2241	si_a318	TRINITY_DN8790_c0_g1	2230	2250	2241	-22.50	-15.50	0.688888888888889	11	5-19,2246-2232	1-4,2250-2247[UP5];20-21,2231-2230[UP3]	..(((((((((((((((....&....)))))))))))))))..	CCGAAGAAAUUAUGGAUUUGG&AUUUAUCCAUGAUUUUUUUAU	2	0.999991168177435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN8790_c0_g1_2241_TPlot.pdf
TRINITY_DN8790_c0_g1:2925	si_s816	TRINITY_DN8790_c0_g1	2913	2935	2925	-24.90	-16.60	0.666666666666667	7.5	1-4,2935-2932;5-15,2930-2920;16-19,2918-2915	x-x,2931-2931[BULt];x-x,2919-2919[BULt];20-21,2914-2913[UP3]	..((((.(((((((((((.((((&))))-)))))))))))-))))..	GCUCAUCUGUUAAGGAGACGGUA&UACC-UUUUCUUAAUA-AUGAAA	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s816_TRINITY_DN8790_c0_g1_2925_TPlot.pdf
TRINITY_DN8790_c0_g1:2926	si_s815	TRINITY_DN8790_c0_g1	2914	2936	2926	-25.00	-16.80	0.672	7.5	2-5,2935-2932;6-16,2930-2920;17-20,2918-2915	1-1,2936-2936[UP5];x-x,2931-2931[BULt];x-x,2919-2919[BULt];21-21,2914-2914[UP3]	.((((.(((((((((((.((((.&.))))-)))))))))))-)))).	CUCAUCUGUUAAGGAGACGGUAU&UUACC-UUUUCUUAAUA-AUGAA	4	0.984859755518195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN8790_c0_g1_2926_TPlot.pdf
TRINITY_DN8792_c0_g1:1953	si_s73	TRINITY_DN8792_c0_g1	1942	1961	1953	-24.00	-16.70	0.695833333333333	8	1-5,1961-1957;9-20,1954-1943	6-8,1956-1955[AILq];21-21,1942-1942[UP3]	.((((((((((((..-(((((&)))))...)))))))))))).	UAAGGAAAGGAAAUU-AUAGA&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8792_c0_g1_1953_TPlot.pdf
TRINITY_DN8792_c0_g1:1954	si_s72	TRINITY_DN8792_c0_g1	1943	1962	1954	-24.10	-16.80	0.697095435684647	7.5	2-6,1961-1957;10-21,1954-1943	1-1,1962-1962[UP5];7-9,1956-1955[AILq]	((((((((((((..-(((((.&.)))))...))))))))))))	AAGGAAAGGAAAUU-AUAGAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8792_c0_g1_1954_TPlot.pdf
TRINITY_DN8792_c0_g1:1981	si_s675	TRINITY_DN8792_c0_g1	1970	1991	1981	-27.50	-18.40	0.669090909090909	5	1-9,1991-1983;10-10,1981-1981;12-21,1979-1970	x-x,1982-1982[BULt];11-11,1980-1980[SIL]	((((((((((.(.(((((((((&)))))))))-).))))))))))	GACUUAUGUUCCAUAUAAUCAA&UUGAUUAUA-GAAACAUGAGUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s675_TRINITY_DN8792_c0_g1_1981_TPlot.pdf
TRINITY_DN8792_c0_g1:2349	si_s40	TRINITY_DN8792_c0_g1	2338	2358	2349	-24.30	-15.80	0.650205761316872	7.5	3-7,2356-2352;9-14,2350-2345;16-21,2343-2338	1-2,2358-2357[UP5];8-8,2351-2351[SIL];15-15,2344-2344[SIL]	((((((.((((((.(((((..&..))))).)))))).))))))	GAAGUCGAAUUGUCAAAGAAU&AAUCUUUAAUAAUUGGAUUUC	4	0.999932182951974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN8792_c0_g1_2349_TPlot.pdf
TRINITY_DN8793_c0_g1:139	si_a549	TRINITY_DN8793_c0_g1	128	149	139	-29.50	-22.10	0.749152542372881	6.5	2-3,148-147;4-9,145-140;11-21,138-128	1-1,149-149[UP5];x-x,146-146[BULt];10-10,139-139[SIL]	(((((((((((.((((((.((.&.))-)))))).)))))))))))	GGAGGUAAAGAUAUGGAUAUGG&UCA-AUCUAUUUCUUUAUCUCC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN8793_c0_g1_139_TPlot.pdf
TRINITY_DN8793_c0_g1:140	si_a548	TRINITY_DN8793_c0_g1	129	150	140	-27.20	-20.20	0.742647058823529	6.5	1-4,150-147;5-10,145-140;12-21,138-129	x-x,146-146[BULt];11-11,139-139[SIL]	((((((((((.((((((.((((&))))-)))))).))))))))))	GAGGUAAAGAUAUGGAUAUGGA&UUCA-AUCUAUUUCUUUAUCUC	4	0.721914389105725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN8793_c0_g1_140_TPlot.pdf
TRINITY_DN8793_c0_g1:141	si_a547	TRINITY_DN8793_c0_g1	130	151	141	-26.90	-18.60	0.691449814126394	7	1-5,151-147;6-11,145-140;13-21,138-130	x-x,146-146[BULt];12-12,139-139[SIL]	(((((((((.((((((.(((((&)))))-)))))).)))))))))	AGGUAAAGAUAUGGAUAUGGAU&GUUCA-AUCUAUUUCUUUAUCU	4	0.997270712471719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN8793_c0_g1_141_TPlot.pdf
TRINITY_DN8793_c1_g2:170	si_a554	TRINITY_DN8793_c1_g2	159	179	170	-34.40	-22.60	0.656976744186047	8	1-4,179-176;6-17,174-163	5-5,175-175[SIL];18-21,162-159[UP3]	....((((((((((((.((((&)))).))))))))))))....	GAUAGGGAGGUAAAGAUAUGG&CUAUUUCUUUAUCUCCCCGUG	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN8793_c1_g2_170_TPlot.pdf
TRINITY_DN8793_c1_g2:171	si_a553	TRINITY_DN8793_c1_g2	160	180	171	-33.70	-22.80	0.676557863501484	7	1-5,180-176;7-18,174-163	6-6,175-175[SIL];19-21,162-160[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AUAGGGAGGUAAAGAUAUGGG&UCUAUUUCUUUAUCUCCCCGU	4	0.994493766558412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a553_TRINITY_DN8793_c1_g2_171_TPlot.pdf
TRINITY_DN8793_c1_g2:173	si_a551	TRINITY_DN8793_c1_g2	162	182	173	-31.60	-22.80	0.721518987341772	8.5	3-7,180-176;9-20,174-163	1-2,182-181[UP5];8-8,175-175[SIL];21-21,162-162[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AGGGAGGUAAAGAUAUGGGGA&AAUCUAUUUCUUUAUCUCCCC	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN8793_c1_g2_173_TPlot.pdf
TRINITY_DN8793_c1_g2:174	si_a550	TRINITY_DN8793_c1_g2	163	183	174	-30.90	-22.80	0.737864077669903	9.5	4-8,180-176;10-21,174-163	1-3,183-181[UP5];9-9,175-175[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GGGAGGUAAAGAUAUGGGGAA&CAAUCUAUUUCUUUAUCUCCC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN8793_c1_g2_174_TPlot.pdf
TRINITY_DN8793_c1_g2:175	si_a549	TRINITY_DN8793_c1_g2	164	184	175	-29.50	-19.50	0.661016949152542	11.5	5-9,180-176;11-21,174-164	1-4,184-181[UP5];10-10,175-175[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GGAGGUAAAGAUAUGGGGAAC&UCAAUCUAUUUCUUUAUCUCC	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN8793_c1_g2_175_TPlot.pdf
TRINITY_DN8793_c1_g2:292	si_s71	TRINITY_DN8793_c1_g2	281	301	292	-25.70	-17.80	0.692607003891051	6	2-6,300-296;8-16,294-286;18-21,284-281	1-1,301-301[UP5];7-7,295-295[SIL];17-17,285-285[SIL]	((((.(((((((((.(((((.&.))))).))))))))).))))	GGGAUAGAGGAAAAUUAGAAU&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8793_c1_g2_292_TPlot.pdf
TRINITY_DN8793_c2_g1:435	si_a551	TRINITY_DN8793_c2_g1	424	444	435	-31.60	-23.10	0.731012658227848	7.5	3-7,442-438;9-20,436-425	1-2,444-443[UP5];8-8,437-437[SIL];21-21,424-424[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AGGGAGGUAAAGAUAUAGGGG&AAUCUAUUUCUUUAUCUCCCC	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN8793_c2_g1_435_TPlot.pdf
TRINITY_DN8793_c2_g1:436	si_a550	TRINITY_DN8793_c2_g1	425	445	436	-30.90	-23.10	0.747572815533981	8.5	4-8,442-438;10-21,436-425	1-3,445-443[UP5];9-9,437-437[SIL]	((((((((((((.(((((...&...))))).))))))))))))	GGGAGGUAAAGAUAUAGGGGA&CAAUCUAUUUCUUUAUCUCCC	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN8793_c2_g1_436_TPlot.pdf
TRINITY_DN8793_c2_g1:437	si_a549	TRINITY_DN8793_c2_g1	426	445	437	-29.50	-20.30	0.688135593220339	7.5	1-2,445-444;5-9,442-438;11-21,436-426	3-4,443-443[AILq];10-10,437-437[SIL]	(((((((((((.(((((.-((&))..))))).)))))))))))	GGAGGUAAAGAUAUAGGG-GA&UCAAUCUAUUUCUUUAUCUCC	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN8793_c2_g1_437_TPlot.pdf
TRINITY_DN8797_c0_g1:1618	si_a513	TRINITY_DN8797_c0_g1	1607	1632	1618	-39.50	-25.90	0.655696202531646	15	2-8,1631-1625;9-19,1619-1609	1-1,1632-1632[UP5];x-x,1624-1620[BULt];20-21,1608-1607[UP3]	..(((((((((((.....(((((((.&.)))))))-----)))))))))))..	CGCCGCCUUACAUGCCUAUUCAGGGU&UCCUUGGA-----AUGUAAGGCGGAC	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN8797_c0_g1_1618_TPlot.pdf
TRINITY_DN8797_c0_g1:1625	si_a511	TRINITY_DN8797_c0_g1	1609	1634	1625	-38.40	-25.70	0.669270833333333	17	4-10,1631-1625;11-21,1619-1609	1-3,1634-1632[UP5];x-x,1624-1620[BULt]	(((((((((((.....(((((((...&...)))))))-----)))))))))))	CCGCCUUACAUGCCUAUUCAGGGUCA&CUUCCUUGGA-----AUGUAAGGCGG	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a511_TRINITY_DN8797_c0_g1_1625_TPlot.pdf
TRINITY_DN8797_c0_g1:1683	si_s67	TRINITY_DN8797_c0_g1	1669	1692	1683	-25.60	-20.10	0.78515625	6.5	1-15,1692-1678;16-21,1674-1669	x-x,1677-1675[BULt]	((((((...(((((((((((((((&)))))))))))))))---))))))	AAGAAAAGUAAAGAUGGAGGUUGU&GCAACUUCUAUUUUU---UUUCUU	4	0.853354825615499	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8797_c0_g1_1683_TPlot.pdf
TRINITY_DN8799_c0_g1:1197	si_a854	TRINITY_DN8799_c0_g1	1186	1205	1197	-25.00	-16.90	0.676	10.5	4-8,1202-1198;11-21,1196-1186	1-3,1205-1203[UP5];9-10,1197-1197[AILq]	(((((((((((.-(((((...&...)))))..)))))))))))	UAGUGGUUGGAG-UCAAGCCG&UAACUUGAAAUCCAAUUAUUA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN8799_c0_g1_1197_TPlot.pdf
TRINITY_DN87_c0_g1:3370	si_a73	TRINITY_DN87_c0_g1	3353	3379	3370	-21.90	-15.00	0.684931506849315	17	3-12,3377-3368;13-21,3361-3353	1-2,3379-3378[UP5];x-x,3367-3362[BULt]	(((((((((......((((((((((..&..))))))))))------)))))))))	GAUGAUGAAUGCAGUGAACAAUUUGUU&UUCAAAUUGUUU------UUCAUUAUU	3	0.99999997614871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN87_c0_g1_3370_TPlot.pdf
TRINITY_DN8806_c0_g1:2760	si_a892	TRINITY_DN8806_c0_g1	2749	2769	2760	-21.30	-16.40	0.769953051643192	2.5	1-12,2769-2758;14-21,2756-2749	13-13,2757-2757[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AUUAUUUACUAUUACUGUAUU&AAUAUAGUAAUAAUAAGUAAU	3	0.45518872670017	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a892_TRINITY_DN8806_c0_g1_2760_TPlot.pdf
TRINITY_DN8808_c0_g1:538	si_s534	TRINITY_DN8808_c0_g1	527	546	538	-28.80	-19.10	0.663194444444445	7	2-8,545-539;10-18,538-530	1-1,546-546[UP5];9-9,x-x[BULq];19-21,529-527[UP3]	...(((((((((-(((((((.&.))))))).)))))))))...	AGCGGUUGGAUC-AAAAUGAG&AUCAUUUUUGAUCCGAUCAAA	4	0.995234586603163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s534_TRINITY_DN8808_c0_g1_538_TPlot.pdf
TRINITY_DN880_c0_g1:1244	si_a341	TRINITY_DN880_c0_g1	1233	1255	1244	-27.80	-18.40	0.661870503597122	7.5	1-4,1255-1252;5-8,1250-1247;10-20,1244-1234	x-x,1251-1251[BULt];9-9,1246-1245[AILt];21-21,1233-1233[UP3]	.(((((((((((..((((.((((&))))-))))-.))))))))))).	CGUUAAUAUUUUAAGGGAGCAAG&CUUG-UCCC-GAAAAUAUUAAUU	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a341_TRINITY_DN880_c0_g1_1244_TPlot.pdf
TRINITY_DN880_c0_g1:949	si_a784	TRINITY_DN880_c0_g1	938	958	949	-24.70	-16.90	0.684210526315789	7	3-9,956-950;11-20,948-939	1-2,958-957[UP5];10-10,949-949[SIL];21-21,938-938[UP3]	.((((((((((.(((((((..&..))))))).)))))))))).	UAAAUAGGGAAUUAGAAGAAA&ACUCUUCUAUUUUUCUAUUUU	3	0.99999999999959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN880_c0_g1_949_TPlot.pdf
TRINITY_DN8812_c0_g1:462	si_a536	TRINITY_DN8812_c0_g1	451	475	462	-38.50	-25.50	0.662337662337662	12.5	1-2,475-474;3-16,469-456;18-20,454-452	x-x,473-470[BULt];17-17,455-455[SIL];21-21,451-451[UP3]	.(((.((((((((((((((....((&))----)))))))))))))).))).	GAGAAUGAGCUGAUUGCUCCGAAGC&GC----GAGCGAUCGGUUCAAUCUA	2	0.763959827174383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a536_TRINITY_DN8812_c0_g1_462_TPlot.pdf
TRINITY_DN8812_c0_g1:463	si_a535	TRINITY_DN8812_c0_g1	452	471	463	-39.60	-26.90	0.679292929292929	5.5	1-2,471-470;4-17,469-456;19-21,454-452	3-3,x-x[BULq];18-18,455-455[SIL]	(((.((((((((((((((-((&)).)))))))))))))).)))	AGAAUGAGCUGAUUGCUC-CG&CGCGAGCGAUCGGUUCAAUCU	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN8812_c0_g1_463_TPlot.pdf
TRINITY_DN8812_c0_g1:552	si_a637	TRINITY_DN8812_c0_g1	542	561	552	-25.80	-17.80	0.689922480620155	10.5	1-13,561-549;15-16,548-547	14-14,x-x[BULq];17-21,546-542[UP3]	.....((-(((((((((((((&))))))))))))).)).....	UGGAGGC-CGAGAGAGUCGAC&GUCGAUUUUUUUGAGUAAUAU	2	0.998853114148591	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN8812_c0_g1_552_TPlot.pdf
TRINITY_DN8812_c0_g1:553	si_a636	TRINITY_DN8812_c0_g1	543	562	553	-26.30	-18.60	0.707224334600761	9	1-14,562-549;16-17,548-547	15-15,x-x[BULq];18-21,546-543[UP3]	....((-((((((((((((((&)))))))))))))).))....	GGAGGC-CGAGAGAGUCGACA&UGUCGAUUUUUUUGAGUAAUA	2	0.985290245801351	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN8812_c0_g1_553_TPlot.pdf
TRINITY_DN8812_c0_g1:557	si_a632	TRINITY_DN8812_c0_g1	547	566	557	-26.10	-18.20	0.697318007662835	11	5-18,562-549;20-21,548-547	1-4,566-563[UP5];19-19,x-x[BULq]	((-((((((((((((((....&....)))))))))))))).))	GC-CGAGAGAGUCGACACCUC&AUUAUGUCGAUUUUUUUGAGU	4	0.999809637231312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN8812_c0_g1_557_TPlot.pdf
TRINITY_DN8812_c0_g1:558	si_a631	TRINITY_DN8812_c0_g1	547	567	558	-25.70	-17.50	0.680933852140078	13.5	6-19,562-549	1-5,567-563[UP5];20-21,548-547[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCCGAGAGAGUCGACACCUCU&UAUUAUGUCGAUUUUUUUGAG	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN8812_c0_g1_558_TPlot.pdf
TRINITY_DN8818_c0_g2:3460	si_a791	TRINITY_DN8818_c0_g2	3449	3469	3460	-26.50	-18.60	0.70188679245283	10.5	3-19,3467-3451	1-2,3469-3468[UP5];20-21,3450-3449[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	UAGUUGGAAAGUGGGGAGAGG&UAUUUUUCUAUUUUCCAAUCC	2	0.982706844982375	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a791_TRINITY_DN8818_c0_g2_3460_TPlot.pdf
TRINITY_DN8818_c0_g2:3461	si_a790	TRINITY_DN8818_c0_g2	3450	3470	3461	-25.80	-18.60	0.72093023255814	11.5	4-20,3467-3451	1-3,3470-3468[UP5];21-21,3450-3450[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AGUUGGAAAGUGGGGAGAGGU&CUAUUUUUCUAUUUUCCAAUC	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN8818_c0_g2_3461_TPlot.pdf
TRINITY_DN8819_c0_g1:1169	si_a332	TRINITY_DN8819_c0_g1	1158	1178	1169	-30.60	-20.90	0.683006535947712	8.5	1-8,1178-1171;10-18,1169-1161	9-9,1170-1170[SIL];19-21,1160-1158[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	UGACGGGGCAGGCAGUAAAGA&UUUUUAUUCCUUGUCCCGAAA	3	0.999128124264209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN8819_c0_g1_1169_TPlot.pdf
TRINITY_DN8819_c0_g1:1618	si_a633	TRINITY_DN8819_c0_g1	1599	1627	1618	-26.40	-18.42	0.697727272727273	23	1-10,1627-1618;13-21,1607-1599	11-12,1617-1608[AILt]	(((((((((..........((((((((((&))))))))))--------..)))))))))	UGCUCAAGAUAUGACUUAUGUCGACAUGA&UUAUGUCGAU--------UUUUUUGAGUA	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN8819_c0_g1_1618_TPlot.pdf
TRINITY_DN8819_c0_g1:391	si_a126	TRINITY_DN8819_c0_g1	377	401	391	-24.70	-16.70	0.676113360323887	6	1-6,401-396;7-15,394-386;16-21,382-377	x-x,395-395[BULt];x-x,385-383[BULt]	((((((...(((((((((.((((((&))))))-)))))))))---))))))	UAGUUAGGUCUGUUGCUACUAAAAC&GUUUUA-UAGCAAUAG---UAAUUA	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN8819_c0_g1_391_TPlot.pdf
TRINITY_DN881_c0_g1:1478	si_a145	TRINITY_DN881_c0_g1	1467	1487	1478	-28.10	-19.50	0.693950177935943	11	6-21,1482-1467	1-5,1487-1483[UP5]	((((((((((((((((.....&.....))))))))))))))))	ACUUUAAGACGACAACUUGUA&UAAUCGUUGUUGUUUUAAGGU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN881_c0_g1_1478_TPlot.pdf
TRINITY_DN881_c0_g1:2770	si_a16	TRINITY_DN881_c0_g1	2759	2779	2770	-26.30	-17.10	0.650190114068441	7.5	1-9,2779-2771;12-20,2768-2760	10-11,2770-2769[SIL];21-21,2759-2759[UP3]	.(((((((((..(((((((((&)))))))))..))))))))).	UUUAGAGAUACCUAGGUUUUC&GAAAGCCUAUUUAUUUUUAGU	2	0.994764405127733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a16_TRINITY_DN881_c0_g1_2770_TPlot.pdf
TRINITY_DN881_c0_g1:2771	si_a15	TRINITY_DN881_c0_g1	2760	2780	2771	-26.20	-17.20	0.656488549618321	7.5	2-10,2779-2771;13-21,2768-2760	1-1,2780-2780[UP5];11-12,2770-2769[SIL]	(((((((((..(((((((((.&.)))))))))..)))))))))	UUAGAGAUACCUAGGUUUUCA&AGAAAGCCUAUUUAUUUUUAG	2	0.958154371854486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a15_TRINITY_DN881_c0_g1_2771_TPlot.pdf
TRINITY_DN8826_c0_g1:841	si_a70	TRINITY_DN8826_c0_g1	827	850	841	-23.90	-17.90	0.748953974895398	8.5	1-10,850-841;11-19,837-829	x-x,840-838[BULt];20-21,828-827[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UUUGGAAAACAACGAUUUGAAAGA&UCUUUCAAAU---UGUUUUUCAUU	3	0.992546073784574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8826_c0_g1_841_TPlot.pdf
TRINITY_DN8826_c0_g1:842	si_a69	TRINITY_DN8826_c0_g1	828	851	842	-24.00	-18.30	0.7625	8	1-11,851-841;12-20,837-829	x-x,840-838[BULt];21-21,828-828[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	UUGGAAAACAACGAUUUGAAAGAG&UUCUUUCAAAU---UGUUUUUCAU	4	0.982863502424623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN8826_c0_g1_842_TPlot.pdf
TRINITY_DN8826_c0_g1:843	si_a68	TRINITY_DN8826_c0_g1	829	852	843	-25.40	-18.30	0.720472440944882	8.5	2-12,851-841;13-21,837-829	1-1,852-852[UP5];x-x,840-838[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	UGGAAAACAACGAUUUGAAAGAGC&CUUCUUUCAAAU---UGUUUUUCA	4	0.999687580080934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8826_c0_g1_843_TPlot.pdf
TRINITY_DN8826_c0_g1:845	si_a66	TRINITY_DN8826_c0_g1	834	853	845	-26.70	-18.60	0.696629213483146	6.5	2-4,852-850;6-18,849-837	1-1,853-853[UP5];5-5,x-x[BULq];19-21,836-834[UP3]	...(((((((((((((-(((.&.))).)))))))))))))...	AACAACGAUUUGAAAG-AGCU&CGCUUCUUUCAAAUUGUUUUU	4	0.999999531394922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN8826_c0_g1_845_TPlot.pdf
TRINITY_DN8826_c0_g1:847	si_a64	TRINITY_DN8826_c0_g1	836	856	847	-29.40	-21.00	0.714285714285714	5.5	1-3,856-854;4-6,852-850;8-20,849-837	x-x,853-853[BULt];7-7,x-x[BULq];21-21,836-836[UP3]	.(((((((((((((-(((.(((&)))-))).))))))))))))).	CAACGAUUUGAAAG-AGCUGAG&CUC-GCUUCUUUCAAAUUGUUU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a64_TRINITY_DN8826_c0_g1_847_TPlot.pdf
TRINITY_DN8826_c0_g1:848	si_a63	TRINITY_DN8826_c0_g1	837	857	848	-30.20	-22.50	0.745033112582781	4.5	1-4,857-854;5-7,852-850;9-21,849-837	x-x,853-853[BULt];8-8,x-x[BULq]	(((((((((((((-(((.((((&))))-))).)))))))))))))	AACGAUUUGAAAG-AGCUGAGU&ACUC-GCUUCUUUCAAAUUGUU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a63_TRINITY_DN8826_c0_g1_848_TPlot.pdf
TRINITY_DN8826_c0_g1:894	si_a26	TRINITY_DN8826_c0_g1	881	903	894	-28.00	-19.00	0.678571428571429	6	1-14,903-890;15-16,887-886;18-20,884-882	x-x,889-888[BULt];17-17,885-885[SIL];21-21,881-881[UP3]	.(((.((..((((((((((((((&))))))))))))))--)).))).	AGGUGUUGAAGAACUGAAAAUGA&UUAUUUUUAGUUCU--AAGACCG	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN8826_c0_g1_894_TPlot.pdf
TRINITY_DN8826_c0_g1:895	si_a25	TRINITY_DN8826_c0_g1	882	904	895	-26.50	-19.50	0.735849056603774	5	1-15,904-890;16-17,887-886;19-21,884-882	x-x,889-888[BULt];18-18,885-885[SIL]	(((.((..(((((((((((((((&)))))))))))))))--)).)))	GGUGUUGAAGAACUGAAAAUGAA&UUUAUUUUUAGUUCU--AAGACC	3	0.742397786252913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN8826_c0_g1_895_TPlot.pdf
TRINITY_DN8826_c0_g1:897	si_a23	TRINITY_DN8826_c0_g1	886	906	897	-22.80	-15.70	0.68859649122807	9	3-17,904-890	1-2,906-905[UP5];18-21,889-886[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUGAAGAACUGAAAAUGAAGA&UAUUUAUUUUUAGUUCUAAGA	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN8826_c0_g1_897_TPlot.pdf
TRINITY_DN8826_c0_g1:898	si_a22	TRINITY_DN8826_c0_g1	887	907	898	-23.50	-15.70	0.668085106382979	10	4-18,904-890	1-3,907-905[UP5];19-21,889-887[UP3]	...(((((((((((((((...&...)))))))))))))))...	UGAAGAACUGAAAAUGAAGAA&CUAUUUAUUUUUAGUUCUAAG	2	0.998395044015175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN8826_c0_g1_898_TPlot.pdf
TRINITY_DN8826_c0_g1:909	si_a71	TRINITY_DN8826_c0_g1	898	920	909	-23.30	-17.10	0.733905579399142	7.5	1-7,920-914;8-20,911-899	x-x,913-912[BULt];21-21,898-898[UP3]	.(((((((((((((..(((((((&)))))))--))))))))))))).	AAAUGAAGAAUAAUCCUUGGAAG&CUUUCAA--AUUGUUUUUCAUUA	3	0.99755186002088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN8826_c0_g1_909_TPlot.pdf
TRINITY_DN8828_c0_g1:934	si_s313	TRINITY_DN8828_c0_g1	918	943	934	-30.80	-20.60	0.668831168831169	11	4-15,940-929;16-21,923-918	1-3,943-941[UP5];x-x,928-924[BULt]	((((((.....((((((((((((...&...))))))))))))-----))))))	GUAAUGAUUACAGAAGGACAGAAAGU&AAAUUCUGUCCUUCU-----UGUUAC	4	0.999995171230596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN8828_c0_g1_934_TPlot.pdf
TRINITY_DN8828_c0_g1:935	si_s312	TRINITY_DN8828_c0_g1	925	944	935	-29.00	-19.60	0.675862068965517	10	5-16,940-929;18-19,928-927	1-4,944-941[UP5];17-17,x-x[BULq];20-21,926-925[UP3]	..((-((((((((((((....&....)))))))))))).))..	UUAC-AGAAGGACAGAAAGUU&AAAAUUCUGUCCUUCUUGUUA	4	0.99999999196975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN8828_c0_g1_935_TPlot.pdf
TRINITY_DN882_c0_g1:6357	si_a784	TRINITY_DN882_c0_g1	6346	6367	6357	-24.70	-16.40	0.663967611336032	11.5	2-8,6366-6360;10-18,6357-6349	1-1,6367-6367[UP5];9-9,6359-6358[AILt];19-21,6348-6346[UP3]	...(((((((((..(((((((.&.)))))))-.)))))))))...	GACAUAGAGGAAGAGGAGGAGA&ACUCUUCU-AUUUUUCUAUUUU	2	0.999999999998809	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN882_c0_g1_6357_TPlot.pdf
TRINITY_DN882_c0_g1:6360	si_a784	TRINITY_DN882_c0_g1	6349	6369	6360	-24.70	-16.40	0.663967611336032	10.5	1-8,6369-6362;10-16,6360-6354	9-9,6361-6361[SIL];17-21,6353-6349[UP3]	.....(((((((.((((((((&)))))))).))))))).....	AUAGAGGAAGAGGAGGAGAGU&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN882_c0_g1_6360_TPlot.pdf
TRINITY_DN882_c0_g1:6370	si_s80	TRINITY_DN882_c0_g1	6358	6380	6370	-28.20	-21.60	0.765957446808511	7.5	1-9,6380-6372;10-10,6370-6370;11-21,6368-6358	x-x,6371-6371[BULt];x-x,6369-6369[BULt]	(((((((((((.(.(((((((((&)))))))))-)-)))))))))))	GAGGAGGAGAGUGCAAGGAAGAA&UUUUUCUUU-C-CUUUCUUCUUC	2	0.999936891661079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN882_c0_g1_6370_TPlot.pdf
TRINITY_DN882_c0_g1:6373	si_s78	TRINITY_DN882_c0_g1	6360	6382	6373	-26.20	-18.00	0.687022900763359	9.5	2-11,6381-6372;12-12,6370-6370;13-21,6368-6360	1-1,6382-6382[UP5];x-x,6371-6371[BULt];x-x,6369-6369[BULt]	(((((((((.(.((((((((((.&.))))))))))-)-)))))))))	GGAGGAGAGUGCAAGGAAGAAGU&UUUUUUUCUUU-C-CUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN882_c0_g1_6373_TPlot.pdf
TRINITY_DN882_c0_g1:6464	si_a786	TRINITY_DN882_c0_g1	6454	6474	6464	-26.60	-17.80	0.669172932330827	6	1-4,6474-6471;5-15,6469-6459;18-21,6457-6454	x-x,6470-6470[BULt];16-17,6458-6458[AILq]	((((.-(((((((((((.((((&))))-)))))))))))..))))	GGAGU-UGGAAAAAUAGCAGGA&UCUU-CUAUUUUUCUAUUUUCC	2	0.999999974557354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN882_c0_g1_6464_TPlot.pdf
TRINITY_DN882_c0_g1:8124	si_a643	TRINITY_DN882_c0_g1	8112	8133	8124	-28.30	-19.40	0.685512367491166	6.5	3-14,8131-8120;15-20,8118-8113	1-2,8133-8132[UP5];x-x,8119-8119[BULt];21-21,8112-8112[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	ACCGAUGCUAUUAUUCAAAAUA&UUUUUUGAGUAAUA-UAUCGGG	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN882_c0_g1_8124_TPlot.pdf
TRINITY_DN882_c0_g2:1707	si_a408	TRINITY_DN882_c0_g2	1695	1716	1707	-20.10	-13.20	0.656716417910448	7	1-11,1716-1706;12-16,1704-1700;19-20,1697-1696	x-x,1705-1705[BULt];17-18,1699-1698[SIL];21-21,1695-1695[UP3]	.((..(((((.(((((((((((&)))))))))))-)))))..)).	GGUGGAAGUAUUAGACAAAACA&UGUUUUGUUUA-UAUUUAAAUA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN882_c0_g2_1707_TPlot.pdf
TRINITY_DN882_c1_g1:405	si_s414	TRINITY_DN882_c1_g1	392	414	405	-24.90	-16.80	0.674698795180723	8.5	2-5,413-410;7-11,408-404;12-20,401-393	1-1,414-414[UP5];6-6,409-409[SIL];x-x,403-402[BULt];21-21,392-392[UP3]	.(((((((((..(((((.((((.&.)))).)))))--))))))))).	CUAUGUAGAAUUUAUGUGGUUUG&AAAACGACAUA--UUCUAUAUAA	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN882_c1_g1_405_TPlot.pdf
TRINITY_DN8835_c0_g1:2405	si_s131	TRINITY_DN8835_c0_g1	2394	2414	2405	-26.70	-18.40	0.689138576779026	9.5	2-15,2413-2400	1-1,2414-2414[UP5];16-21,2399-2394[UP3]	......((((((((((((((.&.))))))))))))))......	CGUGACGUUGAUUCGGCUCUC&AAGAGUUGAAUCAAUCAAAAA	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN8835_c0_g1_2405_TPlot.pdf
TRINITY_DN8835_c0_g1:2524	si_s890	TRINITY_DN8835_c0_g1	2513	2533	2524	-29.50	-20.40	0.691525423728814	14	8-21,2526-2513	1-7,2533-2527[UP5]	((((((((((((((.......&.......))))))))))))))	UGAAGAGAAAGUCUUUCUCGU&AAUAAAUAGGCUUUCUCUUCA	2	0.972931461365852	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s890_TRINITY_DN8835_c0_g1_2524_TPlot.pdf
TRINITY_DN8835_c0_g1:6186	si_s813	TRINITY_DN8835_c0_g1	6175	6195	6186	-27.10	-17.70	0.653136531365314	10	2-14,6194-6182;16-18,6180-6178	1-1,6195-6195[UP5];15-15,6181-6181[SIL];19-21,6177-6175[UP3]	...(((.(((((((((((((.&.))))))))))))).)))...	CGCUGUCGAGAAGGGGUGGCU&CGUUACCUUUUCUUAAUAAUG	2	0.991702220255531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN8835_c0_g1_6186_TPlot.pdf
TRINITY_DN8837_c0_g1:1575	si_a132	TRINITY_DN8837_c0_g1	1563	1584	1575	-26.80	-19.40	0.723880597014925	5.5	1-16,1584-1569;17-18,1567-1566	x-x,1568-1568[BULt];19-21,1565-1563[UP3]	...((.((((((((((((((((&))))))))))))))))-))...	AUAGAUUUAAUUACUGUUGCUG&UAGCAAUAGUAAUUAA-UCGUU	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a132_TRINITY_DN8837_c0_g1_1575_TPlot.pdf
TRINITY_DN8837_c0_g2:699	si_a634	TRINITY_DN8837_c0_g2	688	708	699	-26.40	-17.90	0.678030303030303	8.5	1-6,708-703;8-10,701-699;12-19,697-690	7-7,702-702[SIL];11-11,698-698[SIL];20-21,689-688[UP3]	..((((((((.(((.((((((&)))))).))).))))))))..	GAACUCGAAACAGUGGGCAUA&UAUGUCGAUUUUUUUGAGUAA	2	0.999854708090646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN8837_c0_g2_699_TPlot.pdf
TRINITY_DN8837_c0_g2:700	si_a633	TRINITY_DN8837_c0_g2	689	709	700	-26.40	-18.80	0.712121212121212	7.5	1-7,709-703;9-11,701-699;13-20,697-690	8-8,702-702[SIL];12-12,698-698[SIL];21-21,689-689[UP3]	.((((((((.(((.(((((((&))))))).))).)))))))).	AACUCGAAACAGUGGGCAUAA&UUAUGUCGAUUUUUUUGAGUA	2	0.987946290639231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN8837_c0_g2_700_TPlot.pdf
TRINITY_DN8837_c0_g2:701	si_a632	TRINITY_DN8837_c0_g2	690	710	701	-26.10	-18.50	0.708812260536398	6.5	2-8,709-703;10-12,701-699;14-21,697-690	1-1,710-710[UP5];9-9,702-702[SIL];13-13,698-698[SIL]	((((((((.(((.(((((((.&.))))))).))).))))))))	ACUCGAAACAGUGGGCAUAAA&AUUAUGUCGAUUUUUUUGAGU	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN8837_c0_g2_701_TPlot.pdf
TRINITY_DN8838_c0_g1:887	si_a777	TRINITY_DN8838_c0_g1	875	896	887	-27.00	-19.00	0.703703703703704	9.5	2-10,895-887;11-17,885-879	1-1,896-896[UP5];x-x,886-886[BULt];18-21,878-875[UP3]	....(((((((.(((((((((.&.)))))))))-)))))))....	ACUUGUGGGAGAAGUUGGAUCG&UGAUUCAACU-CUUCUAUUUUU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN8838_c0_g1_887_TPlot.pdf
TRINITY_DN8838_c0_g1:889	si_a775	TRINITY_DN8838_c0_g1	877	898	889	-27.20	-19.00	0.698529411764706	11.5	4-12,895-887;13-19,885-879	1-3,898-896[UP5];x-x,886-886[BULt];20-21,878-877[UP3]	..(((((((.(((((((((...&...)))))))))-)))))))..	UUGUGGGAGAAGUUGGAUCGUG&AUUGAUUCAACU-CUUCUAUUU	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN8838_c0_g1_889_TPlot.pdf
TRINITY_DN8839_c0_g1:3671	si_a238	TRINITY_DN8839_c0_g1	3659	3680	3671	-35.40	-23.60	0.666666666666667	11	4-11,3677-3670;12-20,3668-3660	1-3,3680-3678[UP5];x-x,3669-3669[BULt];21-21,3659-3659[UP3]	.(((((((((.((((((((...&...))))))))-))))))))).	GUGGGGGGUUGGGAUUGAUGCC&AUAAUCAAUUC-GAUCCCCCGA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a238_TRINITY_DN8839_c0_g1_3671_TPlot.pdf
TRINITY_DN8841_c0_g1:2059	si_s188	TRINITY_DN8841_c0_g1	2044	2068	2059	-28.20	-18.58	0.65886524822695	14	1-11,2068-2058;13-17,2052-2048;19-21,2046-2044	12-12,2057-2053[AILt];18-18,2047-2047[SIL]	(((.(((((.....(((((((((((&)))))))))))----.))))).)))	GUUGCAAGAAUGGAGAUCGUUGCUC&GAGUAACGAUU----AUUUUGGAAU	2	0.953194408788835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s188_TRINITY_DN8841_c0_g1_2059_TPlot.pdf
TRINITY_DN8841_c0_g1:2140	si_a188	TRINITY_DN8841_c0_g1	2129	2149	2140	-32.00	-20.90	0.653125	10	2-13,2148-2137;15-17,2135-2133	1-1,2149-2149[UP5];14-14,2136-2136[SIL];18-21,2132-2129[UP3]	....(((.((((((((((((.&.)))))))))))).)))....	UCACGAGGGGGGAGGGGUAUC&AAUAUCUUUCCCUGUUCACUA	4	0.999938833367882	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN8841_c0_g1_2140_TPlot.pdf
TRINITY_DN8841_c0_g1:2142	si_a186	TRINITY_DN8841_c0_g1	2131	2151	2142	-31.50	-20.90	0.663492063492063	12	4-15,2148-2137;17-19,2135-2133	1-3,2151-2149[UP5];16-16,2136-2136[SIL];20-21,2132-2131[UP3]	..(((.((((((((((((...&...)))))))))))).)))..	ACGAGGGGGGAGGGGUAUCAG&AUAAUAUCUUUCCCUGUUCAC	2	0.970097523348189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN8841_c0_g1_2142_TPlot.pdf
TRINITY_DN8841_c0_g1:2143	si_a185	TRINITY_DN8841_c0_g1	2132	2152	2143	-31.70	-20.90	0.659305993690852	13	5-16,2148-2137;18-20,2135-2133	1-4,2152-2149[UP5];17-17,2136-2136[SIL];21-21,2132-2132[UP3]	.(((.((((((((((((....&....)))))))))))).))).	CGAGGGGGGAGGGGUAUCAGU&GAUAAUAUCUUUCCCUGUUCA	4	0.994606263114265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN8841_c0_g1_2143_TPlot.pdf
TRINITY_DN8847_c0_g1:156	si_s899	TRINITY_DN8847_c0_g1	145	165	156	-28.30	-18.50	0.653710247349823	10	1-11,165-155;14-17,152-149	12-13,154-153[SIL];18-21,148-145[UP3]	....((((..(((((((((((&)))))))))))..))))....	CUUGGAGAAGGAAGAGGAGGU&GCUUUCUCUUCAAUUUCAAUU	3	0.999999999981583	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN8847_c0_g1_156_TPlot.pdf
TRINITY_DN8847_c0_g1:158	si_a327	TRINITY_DN8847_c0_g1	148	167	158	-28.40	-20.50	0.721830985915493	8	1-10,167-158;12-17,157-152;19-21,150-148	11-11,x-x[BULq];18-18,151-151[SIL]	(((.((((((-((((((((((&)))))))))).)))))).)))	GGAGAAGGAA-GAGGAGGUCA&UGAUUUUUUUAUUCCUUGUCC	2	0.929421499149357	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN8847_c0_g1_158_TPlot.pdf
TRINITY_DN8847_c0_g1:159	si_s896	TRINITY_DN8847_c0_g1	148	168	159	-31.60	-21.50	0.680379746835443	9.5	3-14,166-155;17-20,152-149	1-2,168-167[UP5];15-16,154-153[SIL];21-21,148-148[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	GGAGAAGGAAGAGGAGGUCAG&UAGGCUUUCUCUUCAAUUUCA	3	0.999505365651732	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN8847_c0_g1_159_TPlot.pdf
TRINITY_DN8847_c0_g1:226	si_a767	TRINITY_DN8847_c0_g1	215	235	226	-30.10	-19.70	0.654485049833887	9	1-9,235-227;12-14,224-222;16-21,220-215	10-11,226-225[SIL];15-15,221-221[SIL]	((((((.(((..(((((((((&)))))))))..))).))))))	GGGUUGCGUCUUUUGAAAGCC&GGUUUUUGAUUGAUUCAACUC	3	0.997450706489318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a767_TRINITY_DN8847_c0_g1_226_TPlot.pdf
TRINITY_DN8847_c0_g1:262	si_a138	TRINITY_DN8847_c0_g1	251	269	262	-26.30	-17.80	0.67680608365019	9	1-7,269-263;11-20,261-252	8-10,262-262[AILq];21-21,251-251[UP3]	.((((((((((.--(((((((&)))))))...)))))))))).	CGCAACGACGAC--AUUGCUA&UAGUAAUUAAUCGUUGUUGUU	3	0.993787607093964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN8847_c0_g1_262_TPlot.pdf
TRINITY_DN8847_c0_g1:263	si_a137	TRINITY_DN8847_c0_g1	252	270	263	-26.50	-17.80	0.671698113207547	9	2-8,269-263;12-21,261-252	1-1,270-270[UP5];9-11,262-262[AILq]	((((((((((.--(((((((.&.)))))))...))))))))))	GCAACGACGAC--AUUGCUAC&AUAGUAAUUAAUCGUUGUUGU	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a137_TRINITY_DN8847_c0_g1_263_TPlot.pdf
TRINITY_DN8847_c0_g1:724	si_a676	TRINITY_DN8847_c0_g1	713	736	724	-34.00	-23.14	0.680588235294118	14.5	1-2,736-735;4-7,733-730;9-21,725-713	3-3,734-734[SIL];8-8,729-726[AILt]	(((((((((((((....((((.((&)).))))---.)))))))))))))	GGAACCGCGUGGGAUUAGAGGUGU&AUUCCUU---AUUCACGCGGUUUC	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a676_TRINITY_DN8847_c0_g1_724_TPlot.pdf
TRINITY_DN8847_c0_g1:735	si_s527	TRINITY_DN8847_c0_g1	724	745	735	-28.00	-19.90	0.710714285714286	9.5	1-7,745-739;10-21,735-724	8-9,738-736[AILt]	((((((((((((...(((((((&)))))))-..))))))))))))	GGAUUAGAGGUGUAAUUCGAGU&AUUCGAA-AUCAUUUUUGAUCC	3	0.671563695646265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN8847_c0_g1_735_TPlot.pdf
TRINITY_DN8848_c0_g1:1135	si_a192	TRINITY_DN8848_c0_g1	1124	1144	1135	-31.90	-20.90	0.655172413793103	5.5	1-5,1144-1140;7-9,1138-1136;11-20,1134-1125	6-6,1139-1139[SIL];10-10,1135-1135[SIL];21-21,1124-1124[UP3]	.((((((((((.(((.(((((&))))).))).)))))))))).	AUAUUAGUGAAGAGGAAAAGG&UCUUUCCCUGUUCACUAAUAA	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a192_TRINITY_DN8848_c0_g1_1135_TPlot.pdf
TRINITY_DN8849_c2_g1:4086	si_a80	TRINITY_DN8849_c2_g1	4075	4095	4086	-22.10	-15.20	0.687782805429864	10	1-15,4095-4081	16-21,4080-4075[UP3]	......(((((((((((((((&)))))))))))))))......	CGCGAAUAAUGAUGGAGAGCA&UGUUUUUCAUUAUUAAGAAAA	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN8849_c2_g1_4086_TPlot.pdf
TRINITY_DN8849_c2_g1:4087	si_a79	TRINITY_DN8849_c2_g1	4076	4096	4087	-22.20	-16.10	0.725225225225225	9	1-16,4096-4081	17-21,4080-4076[UP3]	.....((((((((((((((((&)))))))))))))))).....	GCGAAUAAUGAUGGAGAGCAA&UUGUUUUUCAUUAUUAAGAAA	2	0.9392132527956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN8849_c2_g1_4087_TPlot.pdf
TRINITY_DN884_c0_g1:921	si_s897	TRINITY_DN884_c0_g1	910	933	921	-31.30	-21.20	0.677316293929712	11.5	2-3,932-931;4-5,929-928;6-20,925-911	1-1,933-933[UP5];x-x,930-930[BULt];x-x,927-926[BULt];21-21,910-910[UP3]	.(((((((((((((((..((.((.&.))-))--))))))))))))))).	CUGGAAUUGGAGAGGAUUGGACCA&AGG-CU--UUCUCUUCAAUUUCAA	4	0.999926345661714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN884_c0_g1_921_TPlot.pdf
TRINITY_DN8850_c0_g1:2146	si_s155	TRINITY_DN8850_c0_g1	2135	2156	2146	-42.00	-27.50	0.654761904761905	12.5	4-7,2153-2150;10-20,2146-2136	1-3,2156-2154[UP5];8-9,2149-2147[AILt];21-21,2135-2135[UP3]	.(((((((((((...((((...&...))))-..))))))))))).	ACUUGGCCAUGAUGACUCCAAC&AAAGGAG-GUUCAUGGCCAGGG	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s155_TRINITY_DN8850_c0_g1_2146_TPlot.pdf
TRINITY_DN8850_c0_g1:2147	si_s154	TRINITY_DN8850_c0_g1	2136	2157	2147	-41.30	-27.00	0.653753026634383	13.5	5-8,2153-2150;11-21,2146-2136	1-4,2157-2154[UP5];9-10,2149-2147[AILt]	(((((((((((...((((....&....))))-..)))))))))))	CUUGGCCAUGAUGACUCCAACU&CAAAGGAG-GUUCAUGGCCAGG	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s154_TRINITY_DN8850_c0_g1_2147_TPlot.pdf
TRINITY_DN8850_c0_g1:2180	si_s414	TRINITY_DN8850_c0_g1	2169	2189	2180	-24.90	-16.30	0.654618473895582	14	5-17,2185-2173	1-4,2189-2186[UP5];18-21,2172-2169[UP3]	....(((((((((((((....&....)))))))))))))....	CAAAAUAGAGUGUGUUGGAGA&AAAACGACAUAUUCUAUAUAA	3	0.998079852105799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN8850_c0_g1_2180_TPlot.pdf
TRINITY_DN8850_c0_g1:2181	si_s413	TRINITY_DN8850_c0_g1	2170	2190	2181	-24.80	-16.30	0.657258064516129	14.5	6-18,2185-2173	1-5,2190-2186[UP5];19-21,2172-2170[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAAUAGAGUGUGUUGGAGAU&AAAAACGACAUAUUCUAUAUA	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s413_TRINITY_DN8850_c0_g1_2181_TPlot.pdf
TRINITY_DN8850_c0_g1:2192	si_s603	TRINITY_DN8850_c0_g1	2181	2202	2192	-27.20	-19.30	0.709558823529412	7.5	1-8,2202-2195;9-11,2193-2191;13-19,2189-2183	x-x,2194-2194[BULt];12-12,2190-2190[SIL];20-21,2182-2181[UP3]	..(((((((.(((.((((((((&))))))))-))).)))))))..	UGUUGGAGAUGAUAUCGCUUGG&CCAAGCGA-AUCUUUUUUAAAU	3	0.767195910419458	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN8850_c0_g1_2192_TPlot.pdf
TRINITY_DN8850_c0_g1:2193	si_s602	TRINITY_DN8850_c0_g1	2182	2203	2193	-28.10	-20.70	0.736654804270463	5.5	1-9,2203-2195;10-12,2193-2191;14-20,2189-2183	x-x,2194-2194[BULt];13-13,2190-2190[SIL];21-21,2182-2182[UP3]	.(((((((.(((.(((((((((&)))))))))-))).))))))).	GUUGGAGAUGAUAUCGCUUGGA&UCCAAGCGA-AUCUUUUUUAAA	3	0.476806317651699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s602_TRINITY_DN8850_c0_g1_2193_TPlot.pdf
TRINITY_DN8850_c0_g1:2195	si_s601	TRINITY_DN8850_c0_g1	2183	2204	2195	-28.30	-21.80	0.770318021201413	4.5	1-10,2204-2195;11-13,2193-2191;15-21,2189-2183	x-x,2194-2194[BULt];14-14,2190-2190[SIL]	(((((((.(((.((((((((((&))))))))))-))).)))))))	UUGGAGAUGAUAUCGCUUGGAU&AUCCAAGCGA-AUCUUUUUUAA	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN8850_c0_g1_2195_TPlot.pdf
TRINITY_DN8850_c0_g1:2196	si_s600	TRINITY_DN8850_c0_g1	2184	2205	2196	-28.20	-21.30	0.75531914893617	5.5	2-11,2204-2195;12-14,2193-2191;16-21,2189-2184	1-1,2205-2205[UP5];x-x,2194-2194[BULt];15-15,2190-2190[SIL]	((((((.(((.((((((((((.&.))))))))))-))).))))))	UGGAGAUGAUAUCGCUUGGAUG&AAUCCAAGCGA-AUCUUUUUUA	2	0.230003358235671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN8850_c0_g1_2196_TPlot.pdf
TRINITY_DN8850_c0_g1:2197	si_s599	TRINITY_DN8850_c0_g1	2185	2206	2197	-27.80	-20.10	0.723021582733813	7.5	3-12,2204-2195;13-15,2193-2191;17-21,2189-2185	1-2,2206-2205[UP5];x-x,2194-2194[BULt];16-16,2190-2190[SIL]	(((((.(((.((((((((((..&..))))))))))-))).)))))	GGAGAUGAUAUCGCUUGGAUGA&AAAUCCAAGCGA-AUCUUUUUU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s599_TRINITY_DN8850_c0_g1_2197_TPlot.pdf
TRINITY_DN8850_c0_g1:2198	si_s598	TRINITY_DN8850_c0_g1	2186	2207	2198	-28.20	-19.80	0.702127659574468	8	4-13,2204-2195;14-16,2193-2191;18-21,2189-2186	1-3,2207-2205[UP5];x-x,2194-2194[BULt];17-17,2190-2190[SIL]	((((.(((.((((((((((...&...))))))))))-))).))))	GAGAUGAUAUCGCUUGGAUGAA&UAAAUCCAAGCGA-AUCUUUUU	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s598_TRINITY_DN8850_c0_g1_2198_TPlot.pdf
TRINITY_DN8850_c0_g1:2199	si_s597	TRINITY_DN8850_c0_g1	2184	2208	2199	-28.40	-19.40	0.683098591549296	13	5-14,2204-2195;15-20,2190-2185	1-4,2208-2205[UP5];x-x,2194-2191[BULt];21-21,2184-2184[UP3]	.((((((....((((((((((....&....))))))))))----)))))).	UGGAGAUGAUAUCGCUUGGAUGAAA&AUAAAUCCAAGCGA----AUCUUUU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s597_TRINITY_DN8850_c0_g1_2199_TPlot.pdf
TRINITY_DN8850_c0_g1:2377	si_a329	TRINITY_DN8850_c0_g1	2368	2386	2377	-29.60	-19.30	0.652027027027027	7	2-14,2385-2373;17-21,2372-2368	1-1,2386-2386[UP5];15-16,x-x[BULq]	(((((--(((((((((((((.&.)))))))))))))..)))))	UGGGA--GGGAAUGGAGAAAG&AUUUUUUUAUUCCUUGUCCCG	2	0.999998226760322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN8850_c0_g1_2377_TPlot.pdf
TRINITY_DN8850_c0_g1:2380	si_s75	TRINITY_DN8850_c0_g1	2369	2389	2380	-24.00	-18.00	0.75	9.5	3-11,2387-2379;13-21,2377-2369	1-2,2389-2388[UP5];12-12,2378-2378[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	GGGAGGGAAUGGAGAAAGAGG&UAUUUUUUUUCUUUCCUUUCU	3	0.999999999964799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8850_c0_g1_2380_TPlot.pdf
TRINITY_DN8850_c0_g1:2381	si_s70	TRINITY_DN8850_c0_g1	2370	2390	2381	-25.80	-19.00	0.736434108527132	8	1-6,2390-2385;8-12,2383-2379;14-21,2377-2370	7-7,2384-2384[SIL];13-13,2378-2378[SIL]	((((((((.(((((.((((((&)))))).))))).))))))))	GGAGGGAAUGGAGAAAGAGGU&ACUUCUAUUUUUUUUCUUUCC	3	0.999985687359274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8850_c0_g1_2381_TPlot.pdf
TRINITY_DN8850_c0_g1:2683	si_a758	TRINITY_DN8850_c0_g1	2672	2695	2683	-34.00	-22.10	0.65	11.5	1-6,2695-2690;7-14,2686-2679;16-21,2677-2672	x-x,2689-2687[BULt];15-15,2678-2678[SIL]	((((((.((((((((...((((((&))))))---)))))))).))))))	CGAUUAUAGAUCCAGCUUGGGAGG&CCUCCU---UUGGGUUUUUGAUUG	2	0.999996895399954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN8850_c0_g1_2683_TPlot.pdf
TRINITY_DN8850_c0_g1:3063	si_s78	TRINITY_DN8850_c0_g1	3052	3072	3063	-26.20	-18.70	0.713740458015267	7	2-9,3071-3064;11-13,3062-3060;16-21,3057-3052	1-1,3072-3072[UP5];10-10,3063-3063[SIL];14-15,3059-3058[SIL]	((((((..(((.((((((((.&.)))))))).)))..))))))	AGAAGACUGGAUGGAGAAAAG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8850_c0_g1_3063_TPlot.pdf
TRINITY_DN8850_c0_g1:3069	si_s607	TRINITY_DN8850_c0_g1	3058	3079	3069	-27.60	-18.90	0.684782608695652	8	1-3,3079-3077;5-13,3074-3066;16-20,3063-3059	4-4,3076-3075[AILt];14-15,3065-3064[SIL];21-21,3058-3058[UP3]	.(((((..(((((((((..(((&)))-.)))))))))..))))).	CUGGAUGGAGAAAAGAUAGCGC&GCG-AAUCUUUUUUAAAUCCAA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN8850_c0_g1_3069_TPlot.pdf
TRINITY_DN8850_c0_g1:3070	si_s606	TRINITY_DN8850_c0_g1	3059	3080	3070	-28.20	-18.70	0.663120567375887	7.5	2-4,3079-3077;6-14,3074-3066;17-21,3063-3059	1-1,3080-3080[UP5];5-5,3076-3075[AILt];15-16,3065-3064[SIL]	(((((..(((((((((..(((.&.)))-.)))))))))..)))))	UGGAUGGAGAAAAGAUAGCGCA&AGCG-AAUCUUUUUUAAAUCCA	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN8850_c0_g1_3070_TPlot.pdf
TRINITY_DN8850_c0_g1:3071	si_s70	TRINITY_DN8850_c0_g1	3060	3080	3071	-25.80	-16.80	0.651162790697674	10	5-17,3076-3064;19-21,3062-3060	1-4,3080-3077[UP5];18-18,3063-3063[SIL]	(((.(((((((((((((....&....))))))))))))).)))	GGAUGGAGAAAAGAUAGCGCA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8850_c0_g1_3071_TPlot.pdf
TRINITY_DN8850_c0_g1:3138	si_s898	TRINITY_DN8850_c0_g1	3127	3147	3138	-30.70	-20.50	0.667752442996743	7	1-3,3147-3145;5-18,3143-3130	4-4,3144-3144[SIL];19-21,3129-3127[UP3]	...((((((((((((((.(((&))).))))))))))))))...	GAAGGAAUUGAAGAGAACGUU&GGCUUUCUCUUCAAUUUCAAU	3	0.99999972927552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN8850_c0_g1_3138_TPlot.pdf
TRINITY_DN8850_c0_g1:3256	si_s30	TRINITY_DN8850_c0_g1	3245	3265	3256	-24.80	-17.40	0.701612903225806	9.5	1-8,3265-3258;11-17,3255-3249	9-10,3257-3256[SIL];18-21,3248-3245[UP3]	....(((((((..((((((((&))))))))..)))))))....	CAAAAGAGAUUGUGUUGCAGU&AUUGCAACUAAAUCUUUAAUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN8850_c0_g1_3256_TPlot.pdf
TRINITY_DN8850_c0_g1:3260	si_s26	TRINITY_DN8850_c0_g1	3249	3269	3260	-26.70	-19.90	0.745318352059925	7.5	3-12,3267-3258;15-21,3255-3249	1-2,3269-3268[UP5];13-14,3257-3256[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	AGAGAUUGUGUUGCAGUUAGA&AUUGAUUGCAACUAAAUCUUU	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s26_TRINITY_DN8850_c0_g1_3260_TPlot.pdf
TRINITY_DN8853_c0_g2:4281	si_a20	TRINITY_DN8853_c0_g2	4270	4291	4281	-26.70	-17.72	0.663670411985019	12.5	1-6,4291-4286;10-19,4281-4272	7-9,4285-4282[AILt];20-21,4271-4270[UP3]	..((((((((((....((((((&))))))-...))))))))))..	AUGGGCUGAAAAGUUCGUAGGC&GCCUAU-UUAUUUUUAGUUCUA	4	0.999999794783401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN8853_c0_g2_4281_TPlot.pdf
TRINITY_DN8857_c0_g1:166	si_a68	TRINITY_DN8857_c0_g1	154	175	166	-25.40	-18.90	0.744094488188976	6.5	2-12,174-164;13-20,162-155	1-1,175-175[UP5];x-x,163-163[BULt];21-21,154-154[UP3]	.((((((((.(((((((((((.&.)))))))))))-)))))))).	GGAAGAACAUAUUUGAAGGGAU&CUUCUUUCAAAU-UGUUUUUCA	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8857_c0_g1_166_TPlot.pdf
TRINITY_DN8857_c0_g1:412	si_a896	TRINITY_DN8857_c0_g1	401	420	412	-21.60	-14.30	0.662037037037037	8	1-8,420-413;10-19,412-403	9-9,x-x[BULq];20-21,402-401[UP3]	..((((((((((-((((((((&)))))))).))))))))))..	UGGUAUUAUUUG-UGUUGCUA&UAGUAAUAAUAAGUAAUAUAA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a896_TRINITY_DN8857_c0_g1_412_TPlot.pdf
TRINITY_DN8857_c0_g1:413	si_a894	TRINITY_DN8857_c0_g1	403	422	413	-21.70	-16.00	0.737327188940092	6.5	1-10,422-413;12-21,412-403	11-11,x-x[BULq]	((((((((((-((((((((((&)))))))))).))))))))))	GUAUUAUUUG-UGUUGCUAUG&UAUAGUAAUAAUAAGUAAUAU	4	0.613084329494099	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a894_TRINITY_DN8857_c0_g1_413_TPlot.pdf
TRINITY_DN885_c0_g1:5962	si_s770	TRINITY_DN885_c0_g1	5951	5971	5962	-26.60	-17.70	0.665413533834586	10	4-18,5968-5954	1-3,5971-5969[UP5];19-21,5953-5951[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUCAGCAAUGGUGAUUAACAA&CGAUUAAUUACUAUUGCUAUA	3	0.992079356238549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN885_c0_g1_5962_TPlot.pdf
TRINITY_DN885_c0_g1:6017	si_a897	TRINITY_DN885_c0_g1	6005	6026	6017	-21.20	-13.80	0.650943396226415	4.5	1-2,6026-6025;4-16,6023-6011;17-21,6009-6005	3-3,6024-6024[SIL];x-x,6010-6010[BULt]	(((((.(((((((((((((.((&)).)))))))))))))-)))))	UUUAUAAUUGCUUAUUGUUUCU&AGUAAUAAUAAGUAAU-AUAAA	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a897_TRINITY_DN885_c0_g1_6017_TPlot.pdf
TRINITY_DN8862_c0_g1:1255	si_a344	TRINITY_DN8862_c0_g1	1244	1263	1255	-28.50	-19.02	0.667368421052632	10.5	1-8,1263-1256;13-20,1252-1245	9-12,1255-1253[AILq];21-21,1244-1244[UP3]	.((((((((...-((((((((&))))))))....)))))))).	AAGAAUUGACAG-UUUGGGAC&GUCCCGAAAAUAUUAAUUCUA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN8862_c0_g1_1255_TPlot.pdf
TRINITY_DN8862_c0_g1:1356	si_s89	TRINITY_DN8862_c0_g1	1344	1365	1356	-35.30	-23.20	0.657223796033994	7.5	2-6,1364-1360;8-12,1358-1354;13-20,1352-1345	1-1,1365-1365[UP5];7-7,1359-1359[SIL];x-x,1353-1353[BULt];21-21,1344-1344[UP3]	.((((((((.(((((.(((((.&.))))).)))))-)))))))).	GGAAGCGGACGGAGACGAAAGU&CCUUUCUUCUUC-UUCGCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8862_c0_g1_1356_TPlot.pdf
TRINITY_DN8862_c0_g1:919	si_a722	TRINITY_DN8862_c0_g1	907	931	919	-34.70	-22.70	0.654178674351585	12	3-6,929-926;7-10,922-919;11-21,917-907	1-2,931-930[UP5];x-x,925-923[BULt];x-x,918-918[BULt]	(((((((((((.((((...((((..&..))))---))))-)))))))))))	AGAGAUGUCCGCAGUAGGAACGAAG&AAUCGU---UACU-CGGGCAUCUUU	4	0.999615950378212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN8862_c0_g1_919_TPlot.pdf
TRINITY_DN8863_c0_g1:2508	si_a10	TRINITY_DN8863_c0_g1	2496	2517	2508	-29.50	-21.90	0.742372881355932	8	2-12,2516-2506;13-18,2504-2499	1-1,2517-2517[UP5];x-x,2505-2505[BULt];19-21,2498-2496[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	UUGGGGUGGAGCUUUCUCUUCC&UGAAGAGAAAGC-CUAUUUAUU	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a10_TRINITY_DN8863_c0_g1_2508_TPlot.pdf
TRINITY_DN8863_c0_g1:2620	si_a47	TRINITY_DN8863_c0_g1	2607	2629	2620	-41.20	-28.88	0.700970873786408	9.5	2-10,2628-2620;13-21,2615-2607	1-1,2629-2629[UP5];11-12,2619-2616[AILt]	(((((((((....(((((((((.&.)))))))))--..)))))))))	CGAGUCGGCAACACUAGACCUAA&GUAGGUCUAG--GAGUCGACUCG	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN8863_c0_g1_2620_TPlot.pdf
TRINITY_DN8865_c2_g3:317	si_a376	TRINITY_DN8865_c2_g3	306	326	317	-23.90	-15.80	0.661087866108787	7.5	1-11,326-316;13-19,314-308	12-12,315-315[SIL];20-21,307-306[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UCAAUUCGAUGUUGUUUUUGG&UCAAAAAUGAUUUCGAAUUAA	2	0.886740773273751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a376_TRINITY_DN8865_c2_g3_317_TPlot.pdf
TRINITY_DN8865_c2_g3:318	si_a375	TRINITY_DN8865_c2_g3	307	327	318	-24.00	-17.10	0.7125	6	1-12,327-316;14-20,314-308	13-13,315-315[SIL];21-21,307-307[UP3]	.(((((((.((((((((((((&)))))))))))).))))))).	CAAUUCGAUGUUGUUUUUGGU&AUCAAAAAUGAUUUCGAAUUA	2	0.442876864931872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN8865_c2_g3_318_TPlot.pdf
TRINITY_DN8865_c2_g3:319	si_a374	TRINITY_DN8865_c2_g3	308	328	319	-25.60	-20.70	0.80859375	4.5	1-13,328-316;15-21,314-308	14-14,315-315[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	AAUUCGAUGUUGUUUUUGGUC&GAUCAAAAAUGAUUUCGAAUU	2	0.0603339606808077	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN8865_c2_g3_319_TPlot.pdf
TRINITY_DN8865_c2_g4:224	si_a147	TRINITY_DN8865_c2_g4	214	233	224	-30.40	-22.70	0.746710526315789	4	2-14,232-220;17-20,218-215	1-1,233-233[UP5];15-16,219-219[AILq];21-21,214-214[UP3]	.((((.-(((((((((((((.&.)))))))))))))..)))).	CGACCA-AAAACAACAACGAA&AUCGUUGUUGUUUUAAGGUCA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN8865_c2_g4_224_TPlot.pdf
TRINITY_DN8865_c2_g4:225	si_a146	TRINITY_DN8865_c2_g4	215	234	225	-29.70	-22.30	0.750841750841751	5	3-15,232-220;18-21,218-215	1-2,234-233[UP5];16-17,219-219[AILq]	((((.-(((((((((((((..&..)))))))))))))..))))	GACCA-AAAACAACAACGAAU&AAUCGUUGUUGUUUUAAGGUC	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN8865_c2_g4_225_TPlot.pdf
TRINITY_DN8865_c2_g4:231	si_a140	TRINITY_DN8865_c2_g4	220	241	231	-25.20	-18.40	0.73015873015873	8	4-9,238-233;10-21,231-220	1-3,241-239[UP5];x-x,232-232[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AAAACAACAACGAAUUGAUGAU&GUAAUUAAU-CGUUGUUGUUUU	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN8865_c2_g4_231_TPlot.pdf
TRINITY_DN8865_c2_g5:402	si_a334	TRINITY_DN8865_c2_g5	391	411	402	-30.70	-20.20	0.657980456026059	9.5	1-10,411-402;12-17,400-395	11-11,401-401[SIL];18-21,394-391[UP3]	....((((((.((((((((((&)))))))))).))))))....	AAUGUUGGGAAGAGGAAUGGA&UUUAUUCCUUGUCCCGAAAAU	3	0.999955530688011	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a334_TRINITY_DN8865_c2_g5_402_TPlot.pdf
TRINITY_DN8865_c2_g5:403	si_s811	TRINITY_DN8865_c2_g5	392	411	403	-26.40	-19.10	0.723484848484849	7.5	1-6,411-406;8-20,405-393	7-7,x-x[BULq];21-21,392-392[UP3]	.(((((((((((((-((((((&)))))).))))))))))))).	AUGUUGGGAAGAGG-AAUGGA&UUCGUUACCUUUUCUUAAUAA	4	0.971875891370698	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN8865_c2_g5_403_TPlot.pdf
TRINITY_DN8865_c2_g5:415	si_s75	TRINITY_DN8865_c2_g5	404	424	415	-24.00	-16.60	0.691666666666667	12	6-16,419-409;18-21,407-404	1-5,424-420[UP5];17-17,408-408[SIL]	((((.(((((((((((.....&.....))))))))))).))))	GGAAUGGAGAGAGAAAUGUAA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8865_c2_g5_415_TPlot.pdf
TRINITY_DN8865_c2_g5:823	si_s7	TRINITY_DN8865_c2_g5	812	832	823	-21.70	-14.30	0.658986175115207	9.5	1-13,832-820;15-17,818-816	14-14,819-819[SIL];18-21,815-812[UP3]	....(((.(((((((((((((&))))))))))))).)))....	ACUAGGUUGUAGUGAGUGAUG&UAUUACUUAUUAUUACUAUAU	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN8865_c2_g5_823_TPlot.pdf
TRINITY_DN8865_c2_g5:888	si_s81	TRINITY_DN8865_c2_g5	877	897	888	-28.90	-18.80	0.650519031141869	5	1-8,897-890;10-19,888-879	9-9,889-889[SIL];20-21,878-877[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UUAAGAAGAAAGAAGAGAAAA&UUUUCUUUCCUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN8865_c2_g5_888_TPlot.pdf
TRINITY_DN8865_c2_g5:893	si_s76	TRINITY_DN8865_c2_g5	882	902	893	-23.60	-15.90	0.673728813559322	7	3-13,900-890;15-21,888-882	1-2,902-901[UP5];14-14,889-889[SIL]	(((((((.(((((((((((..&..))))))))))).)))))))	AAGAAAGAAGAGAAAAGGACU&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8865_c2_g5_893_TPlot.pdf
TRINITY_DN8867_c1_g1:5038	si_s64	TRINITY_DN8867_c1_g1	5027	5047	5038	-24.10	-15.70	0.651452282157676	13.5	4-14,5044-5034	1-3,5047-5045[UP5];15-21,5033-5027[UP3]	.......(((((((((((...&...))))))))))).......	ACUUUUUGUAGGAGUUGCAUG&UUAGCAACUUCUAUUUUUUUU	4	0.999999999999982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN8867_c1_g1_5038_TPlot.pdf
TRINITY_DN8869_c0_g1:365	si_a142	TRINITY_DN8869_c0_g1	354	374	365	-23.50	-16.30	0.693617021276596	7	3-7,372-368;9-20,366-355	1-2,374-373[UP5];8-8,367-367[SIL];21-21,354-354[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	CUAAAACAACAGCAAUUAAAA&AAUUAAUCGUUGUUGUUUUAA	3	0.999999938237291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN8869_c0_g1_365_TPlot.pdf
TRINITY_DN8869_c0_g1:366	si_a141	TRINITY_DN8869_c0_g1	355	375	366	-23.80	-16.00	0.672268907563025	8	4-8,372-368;10-21,366-355	1-3,375-373[UP5];9-9,367-367[SIL]	((((((((((((.(((((...&...))))).))))))))))))	UAAAACAACAGCAAUUAAAAG&UAAUUAAUCGUUGUUGUUUUA	4	0.999999999867955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN8869_c0_g1_366_TPlot.pdf
TRINITY_DN8873_c0_g1:3953	si_s74	TRINITY_DN8873_c0_g1	3939	3962	3953	-25.00	-17.70	0.708	9.5	1-13,3962-3950;14-20,3946-3940	x-x,3949-3947[BULt];21-21,3939-3939[UP3]	.(((((((...(((((((((((((&)))))))))))))---))))))).	AGAAGGAAUUCAGGAAGAAGGUGG&CUAUUUUUUUUCU---UUCCUUUC	4	0.99999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8873_c0_g1_3953_TPlot.pdf
TRINITY_DN8874_c0_g1:408	si_s77	TRINITY_DN8874_c0_g1	397	417	408	-25.50	-18.30	0.717647058823529	7	1-9,417-409;11-18,407-400;20-21,398-397	10-10,408-408[SIL];19-19,399-399[SIL]	((.((((((((.(((((((((&))))))))).)))))))).))	GACGAGGGGAAUGAGGAAGAA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8874_c0_g1_408_TPlot.pdf
TRINITY_DN8876_c0_g1:1050	si_s76	TRINITY_DN8876_c0_g1	1039	1059	1050	-23.60	-15.70	0.665254237288135	10.5	1-15,1059-1045	16-21,1044-1039[UP3]	......(((((((((((((((&)))))))))))))))......	CUAAUUGGGGAGAAGAAGGAU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8876_c0_g1_1050_TPlot.pdf
TRINITY_DN8876_c0_g1:1051	si_s75	TRINITY_DN8876_c0_g1	1040	1060	1051	-24.00	-16.80	0.7	9	1-16,1060-1045	17-21,1044-1040[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAAUUGGGGAGAAGAAGGAUA&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8876_c0_g1_1051_TPlot.pdf
TRINITY_DN8876_c0_g1:1052	si_s74	TRINITY_DN8876_c0_g1	1041	1061	1052	-25.00	-17.00	0.68	9	2-17,1060-1045	1-1,1061-1061[UP5];18-21,1044-1041[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAUUGGGGAGAAGAAGGAUAU&CUAUUUUUUUUCUUUCCUUUC	2	0.999999999999984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8876_c0_g1_1052_TPlot.pdf
TRINITY_DN8876_c0_g1:1053	si_s73	TRINITY_DN8876_c0_g1	1042	1062	1053	-24.00	-17.00	0.708333333333333	10	3-18,1060-1045	1-2,1062-1061[UP5];19-21,1044-1042[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUUGGGGAGAAGAAGGAUAUA&UCUAUUUUUUUUCUUUCCUUU	2	0.999999999951393	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8876_c0_g1_1053_TPlot.pdf
TRINITY_DN8876_c0_g1:1054	si_s72	TRINITY_DN8876_c0_g1	1043	1063	1054	-24.10	-17.00	0.705394190871369	11	4-19,1060-1045	1-3,1063-1061[UP5];20-21,1044-1043[UP3]	..((((((((((((((((...&...))))))))))))))))..	UUGGGGAGAAGAAGGAUAUAU&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8876_c0_g1_1054_TPlot.pdf
TRINITY_DN8876_c0_g1:1055	si_s71	TRINITY_DN8876_c0_g1	1044	1064	1055	-25.70	-17.00	0.66147859922179	12	5-20,1060-1045	1-4,1064-1061[UP5];21-21,1044-1044[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGGGGAGAAGAAGGAUAUAUA&CUUCUAUUUUUUUUCUUUCCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN8876_c0_g1_1055_TPlot.pdf
TRINITY_DN8876_c0_g1:1120	si_s834	TRINITY_DN8876_c0_g1	1106	1129	1120	-26.70	-17.70	0.662921348314607	15	5-11,1125-1119;12-20,1115-1107	1-4,1129-1126[UP5];x-x,1118-1116[BULt];21-21,1106-1106[UP3]	.(((((((((...(((((((....&....)))))))---))))))))).	AGCUUCUUUCCCUGAAUUGUAACU&AAAAACAAUUU---GAAAGAAGCG	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s834_TRINITY_DN8876_c0_g1_1120_TPlot.pdf
TRINITY_DN8876_c0_g1:562	si_s68	TRINITY_DN8876_c0_g1	553	571	562	-23.10	-16.08	0.696103896103896	8.5	1-10,571-562;15-21,559-553	11-14,561-560[AILq]	(((((((..--((((((((((&))))))))))....)))))))	AAGGAAAUU--GUGGAAGUUG&CAACUUCUAUUUUUUUUCUUU	4	0.999999999999477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8876_c0_g1_562_TPlot.pdf
TRINITY_DN8876_c0_g1:563	si_s67	TRINITY_DN8876_c0_g1	553	572	563	-25.60	-17.80	0.6953125	7	1-11,572-562;15-21,559-553	12-14,561-560[AILq]	(((((((..-(((((((((((&)))))))))))...)))))))	AAGGAAAUU-GUGGAAGUUGU&GCAACUUCUAUUUUUUUUCUU	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN8876_c0_g1_563_TPlot.pdf
TRINITY_DN8876_c0_g1:564	si_s66	TRINITY_DN8876_c0_g1	554	573	564	-26.30	-17.90	0.680608365019011	6.5	1-12,573-562;16-21,559-554	13-15,561-560[AILq]	((((((..-((((((((((((&))))))))))))...))))))	AGGAAAUU-GUGGAAGUUGUU&AGCAACUUCUAUUUUUUUUCU	3	0.999997991298304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN8876_c0_g1_564_TPlot.pdf
TRINITY_DN8876_c0_g1:565	si_s65	TRINITY_DN8876_c0_g1	555	574	565	-26.00	-17.40	0.669230769230769	6.5	1-13,574-562;17-21,559-555	14-16,561-560[AILq]	(((((..-(((((((((((((&)))))))))))))...)))))	GGAAAUU-GUGGAAGUUGUUG&UAGCAACUUCUAUUUUUUUUC	3	0.999998359419766	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN8876_c0_g1_565_TPlot.pdf
TRINITY_DN8876_c0_g1:566	si_s64	TRINITY_DN8876_c0_g1	555	575	566	-24.10	-17.60	0.730290456431535	7	1-14,575-562;17-21,559-555	15-16,561-560[SIL]	(((((..((((((((((((((&))))))))))))))..)))))	GGAAAUUGUGGAAGUUGUUGG&UUAGCAACUUCUAUUUUUUUU	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN8876_c0_g1_566_TPlot.pdf
TRINITY_DN8876_c0_g1:567	si_s63	TRINITY_DN8876_c0_g1	556	576	567	-25.80	-17.50	0.678294573643411	7.5	2-15,575-562;18-21,559-556	1-1,576-576[UP5];16-17,561-560[SIL]	((((..((((((((((((((.&.))))))))))))))..))))	GAAAUUGUGGAAGUUGUUGGG&GUUAGCAACUUCUAUUUUUUU	3	0.99998831034219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN8876_c0_g1_567_TPlot.pdf
TRINITY_DN8876_c0_g1:569	si_s61	TRINITY_DN8876_c0_g1	558	579	569	-26.50	-17.30	0.652830188679245	10	1-5,579-575;6-17,573-562	x-x,574-574[BULt];18-21,561-558[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	AAUUGUGGAAGUUGUUGGGCUU&AAGUU-AGCAACUUCUAUUUUU	3	0.999996002057448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN8876_c0_g1_569_TPlot.pdf
TRINITY_DN8876_c0_g1:680	si_s30	TRINITY_DN8876_c0_g1	667	689	680	-24.80	-16.28	0.656451612903226	12.5	1-10,689-680;13-18,675-670	11-12,679-676[AILt];19-21,669-667[UP3]	...((((((....((((((((((&))))))))))--..))))))...	CCAUAGAGAAUGGUGGUUGCAAU&AUUGCAACUA--AAUCUUUAAUA	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN8876_c0_g1_680_TPlot.pdf
TRINITY_DN8876_c0_g1:683	si_s27	TRINITY_DN8876_c0_g1	670	692	683	-27.00	-18.08	0.66962962962963	8.5	1-2,692-691;4-13,689-680;16-21,675-670	3-3,690-690[SIL];14-15,679-676[AILt]	((((((....((((((((((.((&)).))))))))))--..))))))	UAGAGAAUGGUGGUUGCAAUGGA&UUGAUUGCAACUA--AAUCUUUA	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s27_TRINITY_DN8876_c0_g1_683_TPlot.pdf
TRINITY_DN8876_c0_g1:872	si_s871	TRINITY_DN8876_c0_g1	859	881	872	-31.00	-20.30	0.654838709677419	8.5	1-6,881-876;8-13,874-869;14-18,866-862	7-7,875-875[SIL];x-x,868-867[BULt];19-21,861-859[UP3]	...(((((..((((((.((((((&)))))).))))))--)))))...	CUGUUGGUACUCUAGGUCCGGUA&UACCGGUCUUAGA--ACUAAAAA	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s871_TRINITY_DN8876_c0_g1_872_TPlot.pdf
TRINITY_DN8876_c0_g1:989	si_a232	TRINITY_DN8876_c0_g1	977	998	989	-28.20	-19.60	0.695035460992908	6	1-16,998-983;17-19,981-979	x-x,982-982[BULt];20-21,978-977[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	UCUUGCAGUUGGUUAUGGAAAC&GUUUCUAUAAUCAAUU-CGAUC	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a232_TRINITY_DN8876_c0_g1_989_TPlot.pdf
TRINITY_DN8876_c0_g1:990	si_a231	TRINITY_DN8876_c0_g1	978	999	990	-26.90	-19.70	0.732342007434944	6	2-17,998-983;18-20,981-979	1-1,999-999[UP5];x-x,982-982[BULt];21-21,978-978[UP3]	.(((.((((((((((((((((.&.))))))))))))))))-))).	CUUGCAGUUGGUUAUGGAAACG&UGUUUCUAUAAUCAAUU-CGAU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a231_TRINITY_DN8876_c0_g1_990_TPlot.pdf
TRINITY_DN8876_c0_g1:991	si_a230	TRINITY_DN8876_c0_g1	979	1000	991	-26.90	-19.60	0.728624535315985	6.5	3-18,998-983;19-21,981-979	1-2,1000-999[UP5];x-x,982-982[BULt]	(((.((((((((((((((((..&..))))))))))))))))-)))	UUGCAGUUGGUUAUGGAAACGA&AUGUUUCUAUAAUCAAUU-CGA	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN8876_c0_g1_991_TPlot.pdf
TRINITY_DN8876_c0_g1:992	si_a229	TRINITY_DN8876_c0_g1	980	1001	992	-27.60	-18.20	0.659420289855072	8.5	4-19,998-983;20-21,981-980	1-3,1001-999[UP5];x-x,982-982[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	UGCAGUUGGUUAUGGAAACGAC&CAUGUUUCUAUAAUCAAUU-CG	3	0.913663876532322	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a229_TRINITY_DN8876_c0_g1_992_TPlot.pdf
TRINITY_DN8876_c0_g1:993	si_a228	TRINITY_DN8876_c0_g1	982	1002	993	-27.10	-18.20	0.671586715867159	10	5-20,998-983	1-4,1002-999[UP5];21-21,982-982[UP3]	.((((((((((((((((....&....)))))))))))))))).	CAGUUGGUUAUGGAAACGACA&UCAUGUUUCUAUAAUCAAUUC	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a228_TRINITY_DN8876_c0_g1_993_TPlot.pdf
TRINITY_DN8876_c0_g1:994	si_a227	TRINITY_DN8876_c0_g1	983	1003	994	-26.80	-18.20	0.67910447761194	11	6-21,998-983	1-5,1003-999[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGUUGGUUAUGGAAACGACAA&CUCAUGUUUCUAUAAUCAAUU	2	0.761003677876299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN8876_c0_g1_994_TPlot.pdf
TRINITY_DN887_c0_g1:398	si_s414	TRINITY_DN887_c0_g1	387	407	398	-24.90	-17.70	0.710843373493976	6.5	1-5,407-403;8-19,400-389	6-7,402-401[SIL];20-21,388-387[UP3]	..((((((((((((..(((((&)))))..))))))))))))..	UGAUGUAGAAUAUGAAGUUUU&AAAACGACAUAUUCUAUAUAA	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s414_TRINITY_DN887_c0_g1_398_TPlot.pdf
TRINITY_DN887_c0_g1:79	si_a786	TRINITY_DN887_c0_g1	68	89	79	-26.60	-19.60	0.736842105263158	5.5	2-7,88-83;8-20,81-69	1-1,89-89[UP5];x-x,82-82[BULt];21-21,68-68[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	AGGAAAUAGAAAAGUUAGAAGG&UCUUCUA-UUUUUCUAUUUUCC	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN887_c0_g1_79_TPlot.pdf
TRINITY_DN887_c0_g1:80	si_a785	TRINITY_DN887_c0_g1	69	90	80	-25.90	-20.10	0.776061776061776	5.5	2-8,89-83;9-21,81-69	1-1,90-90[UP5];x-x,82-82[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	GGAAAUAGAAAAGUUAGAAGGA&CUCUUCUA-UUUUUCUAUUUUC	4	0.983213614161994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN887_c0_g1_80_TPlot.pdf
TRINITY_DN887_c0_g1:81	si_a784	TRINITY_DN887_c0_g1	70	91	81	-24.70	-17.80	0.720647773279352	7.5	3-9,89-83;10-21,81-70	1-2,91-90[UP5];x-x,82-82[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GAAAUAGAAAAGUUAGAAGGAG&ACUCUUCUA-UUUUUCUAUUUU	3	0.999998883256769	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN887_c0_g1_81_TPlot.pdf
TRINITY_DN887_c0_g1:83	si_a783	TRINITY_DN887_c0_g1	71	92	83	-24.70	-16.50	0.668016194331984	9	4-10,89-83;11-21,81-71	1-3,92-90[UP5];x-x,82-82[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AAAUAGAAAAGUUAGAAGGAGA&AACUCUUCUA-UUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN887_c0_g1_83_TPlot.pdf
TRINITY_DN887_c0_g3:105	si_a788	TRINITY_DN887_c0_g3	94	115	105	-24.80	-16.30	0.657258064516129	6.5	1-5,115-111;6-18,109-97	x-x,110-110[BULt];19-21,96-94[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	UAAGGAAAUAGAAAAGUUAGAA&UUCUA-UUUUUCUAUUUUCCAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN887_c0_g3_105_TPlot.pdf
TRINITY_DN887_c0_g3:107	si_a786	TRINITY_DN887_c0_g3	96	117	107	-26.60	-19.60	0.736842105263158	5.5	2-7,116-111;8-20,109-97	1-1,117-117[UP5];x-x,110-110[BULt];21-21,96-96[UP3]	.(((((((((((((.((((((.&.))))))-))))))))))))).	AGGAAAUAGAAAAGUUAGAAGG&UCUUCUA-UUUUUCUAUUUUCC	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN887_c0_g3_107_TPlot.pdf
TRINITY_DN887_c0_g3:108	si_a785	TRINITY_DN887_c0_g3	97	118	108	-25.90	-20.10	0.776061776061776	5.5	2-8,117-111;9-21,109-97	1-1,118-118[UP5];x-x,110-110[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	GGAAAUAGAAAAGUUAGAAGGA&CUCUUCUA-UUUUUCUAUUUUC	3	0.979489561424005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN887_c0_g3_108_TPlot.pdf
TRINITY_DN887_c0_g3:109	si_a784	TRINITY_DN887_c0_g3	98	119	109	-24.70	-17.80	0.720647773279352	7.5	3-9,117-111;10-21,109-98	1-2,119-118[UP5];x-x,110-110[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	GAAAUAGAAAAGUUAGAAGGAG&ACUCUUCUA-UUUUUCUAUUUU	3	0.999997950220038	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN887_c0_g3_109_TPlot.pdf
TRINITY_DN887_c0_g3:111	si_a783	TRINITY_DN887_c0_g3	99	120	111	-24.70	-16.50	0.668016194331984	9	4-10,117-111;11-21,109-99	1-3,120-118[UP5];x-x,110-110[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AAAUAGAAAAGUUAGAAGGAGA&AACUCUUCUA-UUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN887_c0_g3_111_TPlot.pdf
TRINITY_DN887_c0_g3:208	si_s67	TRINITY_DN887_c0_g3	196	217	208	-25.60	-16.70	0.65234375	8	4-10,214-208;11-21,206-196	1-3,217-215[UP5];x-x,207-207[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	AAGAAAAAAAGCUAGAAGUGGA&GCAACUUCUA-UUUUUUUUCUU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN887_c0_g3_208_TPlot.pdf
TRINITY_DN887_c0_g3:363	si_s253	TRINITY_DN887_c0_g3	350	372	363	-29.50	-19.60	0.664406779661017	9	2-10,371-363;11-18,360-353	1-1,372-372[UP5];x-x,362-361[BULt];19-21,352-350[UP3]	...((((((((..(((((((((.&.)))))))))--))))))))...	CCAAGUAAUAUAAGUCGGGAAAG&AUUUCCCGAU--AUAUUACUCAA	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s253_TRINITY_DN887_c0_g3_363_TPlot.pdf
TRINITY_DN8884_c0_g1:624	si_s352	TRINITY_DN8884_c0_g1	613	633	624	-27.20	-18.10	0.665441176470588	4.5	1-20,633-614	21-21,613-613[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GUCAGUUUAUUUUUUUAUUUU&GAGAUAAAGAAAUAGAUUGAA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s352_TRINITY_DN8884_c0_g1_624_TPlot.pdf
TRINITY_DN8886_c0_g1:1673	si_s679	TRINITY_DN8886_c0_g1	1662	1682	1673	-25.20	-17.20	0.682539682539683	11	6-12,1677-1671;14-21,1669-1662	1-5,1682-1678[UP5];13-13,1670-1670[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AUUGAGCUGAUGUUUCAAAAA&UUAUAGAAACAUGAGUUUAAU	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s679_TRINITY_DN8886_c0_g1_1673_TPlot.pdf
TRINITY_DN888_c0_g2:1058	si_s672	TRINITY_DN888_c0_g2	1047	1067	1058	-27.10	-18.40	0.678966789667897	6	1-4,1067-1064;6-19,1062-1049	5-5,1063-1063[SIL];20-21,1048-1047[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	AAGUGUUUCUGUAAUCCAUUU&GAAUUGAUUAUAGAAACAUGA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s672_TRINITY_DN888_c0_g2_1058_TPlot.pdf
TRINITY_DN888_c0_g2:1059	si_s671	TRINITY_DN888_c0_g2	1048	1068	1059	-27.60	-18.40	0.666666666666667	6.5	2-5,1067-1064;7-20,1062-1049	1-1,1068-1068[UP5];6-6,1063-1063[SIL];21-21,1048-1048[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	AGUGUUUCUGUAAUCCAUUUA&CGAAUUGAUUAUAGAAACAUG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s671_TRINITY_DN888_c0_g2_1059_TPlot.pdf
TRINITY_DN888_c0_g2:1060	si_s670	TRINITY_DN888_c0_g2	1049	1069	1060	-26.90	-18.40	0.684014869888476	7	3-6,1067-1064;8-21,1062-1049	1-2,1069-1068[UP5];7-7,1063-1063[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GUGUUUCUGUAAUCCAUUUAU&UCGAAUUGAUUAUAGAAACAU	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s670_TRINITY_DN888_c0_g2_1060_TPlot.pdf
TRINITY_DN888_c0_g2:224	si_a76	TRINITY_DN888_c0_g2	213	233	224	-21.20	-13.80	0.650943396226415	8	3-5,231-229;7-20,227-214	1-2,233-232[UP5];6-6,228-228[SIL];21-21,213-213[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	GUUGGUAAUGGAAAAGAAUCU&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999999991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN888_c0_g2_224_TPlot.pdf
TRINITY_DN8890_c0_g1:667	si_a351	TRINITY_DN8890_c0_g1	656	676	667	-20.50	-14.00	0.682926829268293	8	4-18,673-659;20-20,657-657	1-3,676-674[UP5];19-19,658-658[SIL];21-21,656-656[UP3]	.(.(((((((((((((((...&...))))))))))))))).).	UUGAGGAUAGAAUUAAUAAUC&AAAUAUUAAUUCUAUUUUGAU	1	0.102080622092002	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN8890_c0_g1_667_TPlot.pdf
TRINITY_DN8894_c0_g1:1119	si_s803	TRINITY_DN8894_c0_g1	1108	1128	1119	-26.00	-18.60	0.715384615384615	9	3-5,1126-1124;7-20,1122-1109	1-2,1128-1127[UP5];6-6,1123-1123[SIL];21-21,1108-1108[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	CGAAGGUGAUGGAGAAAAAGA&AUUUUAUCUUCGUUACCUUUU	2	0.998434501920913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8894_c0_g1_1119_TPlot.pdf
TRINITY_DN8894_c0_g1:1120	si_s802	TRINITY_DN8894_c0_g1	1109	1129	1120	-26.40	-18.60	0.704545454545455	9.5	4-6,1126-1124;8-21,1122-1109	1-3,1129-1127[UP5];7-7,1123-1123[SIL]	((((((((((((((.(((...&...))).))))))))))))))	GAAGGUGAUGGAGAAAAAGAC&UAUUUUAUCUUCGUUACCUUU	4	0.999876598653756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8894_c0_g1_1120_TPlot.pdf
TRINITY_DN8894_c0_g1:1121	si_s801	TRINITY_DN8894_c0_g1	1110	1129	1121	-28.20	-18.60	0.659574468085106	7	1-2,1129-1128;4-7,1127-1124;9-21,1122-1110	3-3,x-x[BULq];8-8,1123-1123[SIL]	(((((((((((((.((((-((&)).)))).)))))))))))))	AAGGUGAUGGAGAAAAAG-AC&GUAUUUUAUCUUCGUUACCUU	2	0.999901218111531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN8894_c0_g1_1121_TPlot.pdf
TRINITY_DN8894_c0_g1:1122	si_s800	TRINITY_DN8894_c0_g1	1111	1130	1122	-29.70	-19.80	0.666666666666667	6.5	1-3,1130-1128;5-8,1127-1124;10-21,1122-1111	4-4,x-x[BULq];9-9,1123-1123[SIL]	((((((((((((.((((-(((&))).)))).))))))))))))	AGGUGAUGGAGAAAAAG-ACG&CGUAUUUUAUCUUCGUUACCU	2	0.992105207356984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN8894_c0_g1_1122_TPlot.pdf
TRINITY_DN8894_c0_g1:1453	si_a73	TRINITY_DN8894_c0_g1	1442	1462	1453	-21.90	-14.80	0.675799086757991	13.5	7-21,1456-1442	1-6,1462-1457[UP5]	(((((((((((((((......&......)))))))))))))))	AGUGAUGAGGAACAAGACAAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999808535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN8894_c0_g1_1453_TPlot.pdf
TRINITY_DN8894_c0_g1:1488	si_a494	TRINITY_DN8894_c0_g1	1478	1497	1488	-29.50	-21.80	0.738983050847458	4.5	1-3,1497-1495;5-13,1493-1485;15-21,1484-1478	4-4,1494-1494[SIL];14-14,x-x[BULq]	(((((((-(((((((((.(((&))).))))))))).)))))))	GAAGGCG-AAGACGACAAAUU&AAUAUGUCGUUUUUCGUCUUC	3	0.975883775159886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN8894_c0_g1_1488_TPlot.pdf
TRINITY_DN8894_c0_g1:1549	si_a73	TRINITY_DN8894_c0_g1	1538	1558	1549	-21.90	-14.88	0.679452054794521	9	1-3,1558-1556;7-21,1552-1538	4-6,1555-1553[SIL]	(((((((((((((((...(((&)))...)))))))))))))))	GAUAAUGAGGAACAGAUAGAA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999998893116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN8894_c0_g1_1549_TPlot.pdf
TRINITY_DN8894_c0_g1:1669	si_a779	TRINITY_DN8894_c0_g1	1657	1682	1669	-27.00	-17.80	0.659259259259259	10	1-7,1682-1676;8-15,1671-1664;16-21,1662-1657	x-x,1675-1672[BULt];x-x,1663-1663[BULt]	((((((.((((((((....(((((((&)))))))----))))))))-))))))	AGAAAGUGUAGAAGAAGUAGUUGAAU&AUUCAAC----UCUUCUAU-UUUUCU	4	0.999999852505888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN8894_c0_g1_1669_TPlot.pdf
TRINITY_DN8894_c0_g1:1894	si_a397	TRINITY_DN8894_c0_g1	1883	1903	1894	-24.00	-15.70	0.654166666666667	11.5	6-21,1898-1883	1-5,1903-1899[UP5]	((((((((((((((((.....&.....))))))))))))))))	GAACAAGAUGAUUCUAAAGCA&GAAUAUAGAAUUGUUUUGUUU	4	0.999999348004209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a397_TRINITY_DN8894_c0_g1_1894_TPlot.pdf
TRINITY_DN8894_c0_g1:2214	si_s79	TRINITY_DN8894_c0_g1	2203	2223	2214	-26.20	-17.30	0.66030534351145	5.5	1-10,2223-2214;13-21,2211-2203	11-12,2213-2212[SIL]	(((((((((..((((((((((&))))))))))..)))))))))	AAGAGGAAACUAAAGAAGAAA&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8894_c0_g1_2214_TPlot.pdf
TRINITY_DN8894_c0_g1:4806	si_s449	TRINITY_DN8894_c0_g1	4795	4815	4806	-23.60	-17.00	0.720338983050847	7	1-16,4815-4800	17-21,4799-4795[UP3]	.....((((((((((((((((&)))))))))))))))).....	AGUUCAUUGUUGUUAUGUGUA&UAUAUAUAACAACAAUUAUCU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s449_TRINITY_DN8894_c0_g1_4806_TPlot.pdf
TRINITY_DN8894_c0_g1:4809	si_s446	TRINITY_DN8894_c0_g1	4798	4818	4809	-21.30	-17.20	0.807511737089202	9	4-19,4815-4800	1-3,4818-4816[UP5];20-21,4799-4798[UP3]	..((((((((((((((((...&...))))))))))))))))..	UCAUUGUUGUUAUGUGUAUAU&UAUUAUAUAUAACAACAAUUA	4	0.203131772366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN8894_c0_g1_4809_TPlot.pdf
TRINITY_DN889_c0_g1:1160	si_a634	TRINITY_DN889_c0_g1	1149	1169	1160	-26.40	-17.70	0.670454545454545	7	1-8,1169-1162;10-18,1160-1152	9-9,1161-1161[SIL];19-21,1151-1149[UP3]	...(((((((((.((((((((&)))))))).)))))))))...	CAUUUCGAAAAAUUCGACGUA&UAUGUCGAUUUUUUUGAGUAA	2	0.999968566676748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN889_c0_g1_1160_TPlot.pdf
TRINITY_DN889_c0_g1:1161	si_a633	TRINITY_DN889_c0_g1	1150	1170	1161	-26.40	-17.80	0.674242424242424	7	2-9,1169-1162;11-19,1160-1152	1-1,1170-1170[UP5];10-10,1161-1161[SIL];20-21,1151-1150[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	AUUUCGAAAAAUUCGACGUAC&UUAUGUCGAUUUUUUUGAGUA	3	0.999999927379253	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN889_c0_g1_1161_TPlot.pdf
TRINITY_DN889_c0_g1:1162	si_a632	TRINITY_DN889_c0_g1	1151	1171	1162	-26.10	-17.80	0.681992337164751	8	3-10,1169-1162;12-20,1160-1152	1-2,1171-1170[UP5];11-11,1161-1161[SIL];21-21,1151-1151[UP3]	.(((((((((.((((((((..&..)))))))).))))))))).	UUUCGAAAAAUUCGACGUACC&AUUAUGUCGAUUUUUUUGAGU	4	0.999996804497116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN889_c0_g1_1162_TPlot.pdf
TRINITY_DN889_c0_g1:1658	si_a786	TRINITY_DN889_c0_g1	1651	1667	1658	-26.60	-18.20	0.684210526315789	7	1-14,1667-1654;19-21,1653-1651	15-18,x-x[BULq]	(((----((((((((((((((&))))))))))))))....)))	GGA----AGAAGAAUGGAGGA&UCUUCUAUUUUUCUAUUUUCC	3	0.999999999710999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN889_c0_g1_1658_TPlot.pdf
TRINITY_DN889_c0_g1:1660	si_s68	TRINITY_DN889_c0_g1	1649	1669	1660	-23.10	-17.90	0.774891774891775	10	4-20,1666-1650	1-3,1669-1667[UP5];21-21,1649-1649[UP3]	.(((((((((((((((((...&...))))))))))))))))).	UAGGAAGAAGAAUGGAGGAAG&CAACUUCUAUUUUUUUUCUUU	4	0.996574982621173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN889_c0_g1_1660_TPlot.pdf
TRINITY_DN889_c0_g1:219	si_a333	TRINITY_DN889_c0_g1	208	228	219	-30.60	-21.80	0.712418300653595	6.5	1-7,228-222;9-20,220-209	8-8,221-221[SIL];21-21,208-208[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	AUUUUGGGACAAGCAGUGGAA&UUUUAUUCCUUGUCCCGAAAA	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN889_c0_g1_219_TPlot.pdf
TRINITY_DN88_c0_g1:3173	si_a384	TRINITY_DN88_c0_g1	3162	3183	3173	-25.80	-17.50	0.678294573643411	5.5	1-9,3183-3175;10-21,3173-3162	x-x,3174-3174[BULt]	((((((((((((.(((((((((&)))))))))-))))))))))))	UUAUGUUCUUAAUUUUGAGAUU&GAUUUCGAA-UUAAGAAUAUAG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a384_TRINITY_DN88_c0_g1_3173_TPlot.pdf
TRINITY_DN8902_c0_g1:760	si_a70	TRINITY_DN8902_c0_g1	749	771	760	-23.90	-16.10	0.673640167364017	10	1-8,771-764;9-18,761-752	x-x,763-762[BULt];19-21,751-749[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	CAAGGAGGACAAUUUUUGAGAGG&UCUUUCAA--AUUGUUUUUCAUU	3	0.999999997767088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN8902_c0_g1_760_TPlot.pdf
TRINITY_DN890_c0_g2:1201	si_a327	TRINITY_DN890_c0_g2	1190	1208	1201	-28.40	-20.50	0.721830985915493	9.5	2-7,1207-1202;11-21,1200-1190	1-1,1208-1208[UP5];8-10,1201-1201[AILq]	(((((((((((.--((((((.&.))))))...)))))))))))	GGACGAGGAGUU--GAAAUCU&UGAUUUUUUUAUUCCUUGUCC	3	0.987382543521561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN890_c0_g2_1201_TPlot.pdf
TRINITY_DN890_c0_g2:1755	si_s58	TRINITY_DN890_c0_g2	1744	1771	1755	-29.30	-19.40	0.662116040955631	20	2-8,1770-1764;9-18,1756-1747	1-1,1771-1771[UP5];x-x,1763-1757[BULt];19-21,1746-1744[UP3]	...((((((((((.......(((((((.&.)))))))-------))))))))))...	UACAGAAGUUGCUCGAAUCUGGCUUGAU&UUCAAGUU-------AGCAACUUCUAUU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s58_TRINITY_DN890_c0_g2_1755_TPlot.pdf
TRINITY_DN890_c0_g2:1900	si_s695	TRINITY_DN890_c0_g2	1890	1909	1900	-24.70	-16.10	0.651821862348178	6	2-10,1908-1900;12-21,1899-1890	1-1,1909-1909[UP5];11-11,x-x[BULq]	((((((((((-(((((((((.&.))))))))).))))))))))	AUUAAUGAAU-GACUGGUUAU&UUAAUUAGUCGAUUUAUUAGU	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s695_TRINITY_DN890_c0_g2_1900_TPlot.pdf
TRINITY_DN8912_c0_g1:804	si_s13	TRINITY_DN8912_c0_g1	793	814	804	-22.90	-15.10	0.65938864628821	6	2-9,813-806;10-19,804-795	1-1,814-814[UP5];x-x,805-805[BULt];20-21,794-793[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	UUAUCGGUAUAGCUAAUAAUAU&UUAUUAUUA-CUAUAUUGAUUG	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN8912_c0_g1_804_TPlot.pdf
TRINITY_DN8915_c0_g1:1624	si_s84	TRINITY_DN8915_c0_g1	1613	1632	1624	-32.30	-21.60	0.668730650154799	7.5	1-8,1632-1625;11-19,1623-1615	9-10,1624-1624[AILq];20-21,1614-1613[UP3]	..(((((((((.-((((((((&))))))))..)))))))))..	CUAGGAAGAAGU-GGGAAAGA&UCUUUCCUUUCUUCUUCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8915_c0_g1_1624_TPlot.pdf
TRINITY_DN8915_c0_g1:3404	si_a142	TRINITY_DN8915_c0_g1	3394	3413	3404	-23.50	-16.00	0.680851063829787	5	1-4,3413-3410;7-13,3407-3401;15-21,3400-3394	5-6,3409-3408[SIL];14-14,x-x[BULq]	(((((((-(((((((..((((&))))..))))))).)))))))	UUAAAAC-ACAACGAGGAAUU&AAUUAAUCGUUGUUGUUUUAA	2	0.999997725566122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN8915_c0_g1_3404_TPlot.pdf
TRINITY_DN8917_c0_g1:1355	si_s771	TRINITY_DN8917_c0_g1	1344	1364	1355	-25.20	-17.00	0.674603174603175	8.5	1-4,1364-1361;7-17,1358-1348	5-6,1360-1359[SIL];18-21,1347-1344[UP3]	....(((((((((((..((((&))))..)))))))))))....	AGAAAGUAAUAGUAAGGAAUC&GAUUAAUUACUAUUGCUAUAA	2	0.965280722018081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s771_TRINITY_DN8917_c0_g1_1355_TPlot.pdf
TRINITY_DN8917_c0_g1:1356	si_s770	TRINITY_DN8917_c0_g1	1345	1365	1356	-26.60	-19.10	0.718045112781955	7.5	1-5,1365-1361;8-18,1358-1348	6-7,1360-1359[SIL];19-21,1347-1345[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	GAAAGUAAUAGUAAGGAAUCG&CGAUUAAUUACUAUUGCUAUA	3	0.714958183737395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s770_TRINITY_DN8917_c0_g1_1356_TPlot.pdf
TRINITY_DN8917_c0_g1:1377	si_s68	TRINITY_DN8917_c0_g1	1366	1387	1377	-23.10	-15.50	0.670995670995671	10	4-7,1384-1381;8-21,1379-1366	1-3,1387-1385[UP5];x-x,1380-1380[BULt]	((((((((((((((.((((...&...))))-))))))))))))))	AGAGAAAAGAAAUGCGAGGCAA&CAACUUC-UAUUUUUUUUCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8917_c0_g1_1377_TPlot.pdf
TRINITY_DN8917_c0_g1:1562	si_s894	TRINITY_DN8917_c0_g1	1550	1571	1562	-29.10	-19.00	0.652920962199313	14	5-10,1567-1562;11-17,1560-1554	1-4,1571-1568[UP5];x-x,1561-1561[BULt];18-21,1553-1550[UP3]	....(((((((.((((((....&....))))))-)))))))....	GUAGUGAAGAGAAGAGCCAAUC&AAUAGGCUUU-CUCUUCAAUUU	3	0.999999999851826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s894_TRINITY_DN8917_c0_g1_1562_TPlot.pdf
TRINITY_DN8917_c0_g1:1757	si_s89	TRINITY_DN8917_c0_g1	1746	1767	1757	-35.30	-26.40	0.747875354107649	7	1-8,1767-1760;9-18,1758-1749	x-x,1759-1759[BULt];19-21,1748-1746[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	AAUAGCGAAGAAGCAGGGAAGG&CCUUUCUU-CUUCUUCGCUUCG	4	0.993895094681219	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN8917_c0_g1_1757_TPlot.pdf
TRINITY_DN8917_c0_g1:1763	si_s85	TRINITY_DN8917_c0_g1	1750	1773	1763	-33.80	-25.70	0.760355029585799	9	1-4,1773-1770;5-12,1768-1761;13-21,1758-1750	x-x,1769-1769[BULt];x-x,1760-1759[BULt]	(((((((((..((((((((.((((&))))-))))))))--)))))))))	GCGAAGAAGCAGGGAAGGGUAAAG&CUUU-CCUUUCUU--CUUCUUCGC	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8917_c0_g1_1763_TPlot.pdf
TRINITY_DN8917_c0_g1:1765	si_a186	TRINITY_DN8917_c0_g1	1754	1774	1765	-31.50	-20.50	0.650793650793651	12.5	5-18,1770-1757	1-4,1774-1771[UP5];19-21,1756-1754[UP3]	...((((((((((((((....&....))))))))))))))...	AGAAGCAGGGAAGGGUAAAGA&AUAAUAUCUUUCCCUGUUCAC	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN8917_c0_g1_1765_TPlot.pdf
TRINITY_DN8917_c0_g1:1774	si_s803	TRINITY_DN8917_c0_g1	1763	1783	1774	-26.00	-18.80	0.723076923076923	8	4-11,1780-1773;13-21,1771-1763	1-3,1783-1781[UP5];12-12,1772-1772[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAAGGGUAAAGAAGAUAACGU&AUUUUAUCUUCGUUACCUUUU	4	0.999901665387931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8917_c0_g1_1774_TPlot.pdf
TRINITY_DN8917_c0_g1:562	si_a776	TRINITY_DN8917_c0_g1	550	571	562	-27.10	-19.40	0.715867158671587	7	1-14,571-558;15-16,556-555	x-x,557-557[BULt];17-21,554-550[UP3]	.....((.((((((((((((((&))))))))))))))-)).....	AAACAGGCAAGAGUUGAAUCAG&UUGAUUCAACUCUU-CUAUUUU	4	0.942077278576195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN8917_c0_g1_562_TPlot.pdf
TRINITY_DN8917_c0_g1:877	si_s199	TRINITY_DN8917_c0_g1	861	886	877	-31.20	-20.50	0.657051282051282	15.5	2-12,885-875;13-21,869-861	1-1,886-886[UP5];x-x,874-870[BULt]	(((((((((.....(((((((((((.&.)))))))))))-----)))))))))	ACAGCUGGUCAUAAGCAUUUUAGAAC&AUUUUGGAAUGU-----ACCAGUUGU	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s199_TRINITY_DN8917_c0_g1_877_TPlot.pdf
TRINITY_DN8918_c0_g1:232	si_s357	TRINITY_DN8918_c0_g1	221	241	232	-28.70	-18.90	0.658536585365854	5.5	3-14,239-228;16-21,226-221	1-2,241-240[UP5];15-15,227-227[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AUUGGUGCAAUCUAUUUUUCG&AAAGAAAUAGAUUGAACCGAU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s357_TRINITY_DN8918_c0_g1_232_TPlot.pdf
TRINITY_DN891_c0_g1:123	si_a464	TRINITY_DN891_c0_g1	112	133	123	-19.60	-13.80	0.704081632653061	9	1-9,133-125;10-18,123-115	x-x,124-124[BULt];19-21,114-112[UP3]	...(((((((((.(((((((((&)))))))))-)))))))))...	AAAAAUUGCAUAUUUGUGUGUG&UAUAUAUAA-UAUGUAAUUAUU	2	0.934500095501798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN891_c0_g1_123_TPlot.pdf
TRINITY_DN891_c0_g1:125	si_a463	TRINITY_DN891_c0_g1	113	134	125	-19.70	-13.80	0.700507614213198	9.5	2-10,133-125;11-19,123-115	1-1,134-134[UP5];x-x,124-124[BULt];20-21,114-113[UP3]	..(((((((((.(((((((((.&.)))))))))-)))))))))..	AAAAUUGCAUAUUUGUGUGUGU&UUAUAUAUAA-UAUGUAAUUAU	2	0.951413723591217	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN891_c0_g1_125_TPlot.pdf
TRINITY_DN891_c0_g1:126	si_a462	TRINITY_DN891_c0_g1	114	135	126	-21.20	-13.80	0.650943396226415	10.5	3-11,133-125;12-20,123-115	1-2,135-134[UP5];x-x,124-124[BULt];21-21,114-114[UP3]	.(((((((((.(((((((((..&..)))))))))-))))))))).	AAAUUGCAUAUUUGUGUGUGUG&GUUAUAUAUAA-UAUGUAAUUA	2	0.998374943667631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN891_c0_g1_126_TPlot.pdf
TRINITY_DN891_c0_g1:1718	si_a787	TRINITY_DN891_c0_g1	1707	1727	1718	-26.30	-17.60	0.669201520912548	7.5	1-5,1727-1723;7-13,1721-1715;15-20,1713-1708	6-6,1722-1722[SIL];14-14,1714-1714[SIL];21-21,1707-1707[UP3]	.((((((.(((((((.(((((&))))).))))))).)))))).	AGGAAAACGGAGAAGAAGAGG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999999964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN891_c0_g1_1718_TPlot.pdf
TRINITY_DN891_c0_g1:192	si_a733	TRINITY_DN891_c0_g1	181	201	192	-44.60	-32.40	0.726457399103139	7.5	1-10,201-192;13-19,189-183	11-12,191-190[SIL];20-21,182-181[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	UCGCCGGGGAGGAAGAUGCCC&GGGCAUCUUUACCCCUGGCCA	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a733_TRINITY_DN891_c0_g1_192_TPlot.pdf
TRINITY_DN891_c0_g1:194	si_a731	TRINITY_DN891_c0_g1	183	203	194	-44.00	-32.70	0.743181818181818	6.5	3-12,201-192;15-21,189-183	1-2,203-202[UP5];13-14,191-190[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GCCGGGGAGGAAGAUGCCCCC&UCGGGCAUCUUUACCCCUGGC	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a731_TRINITY_DN891_c0_g1_194_TPlot.pdf
TRINITY_DN891_c0_g1:1944	si_a142	TRINITY_DN891_c0_g1	1933	1953	1944	-23.50	-16.70	0.71063829787234	14	7-19,1947-1935	1-6,1953-1948[UP5];20-21,1934-1933[UP3]	..(((((((((((((......&......)))))))))))))..	CGGGAACAACAACGACGAAGA&AAUUAAUCGUUGUUGUUUUAA	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN891_c0_g1_1944_TPlot.pdf
TRINITY_DN891_c0_g1:196	si_a729	TRINITY_DN891_c0_g1	184	207	196	-41.60	-28.50	0.685096153846154	9.5	2-4,206-204;5-14,201-192;16-19,189-186	1-1,207-207[UP5];x-x,203-202[BULt];15-15,191-190[AILt];20-21,185-184[UP3]	..((((..((((((((((..(((.&.)))--))))))))))-.))))..	CCGGGGAGGAAGAUGCCCCCGAGG&ACUC--GGGCAUCUUU-ACCCCUG	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a729_TRINITY_DN891_c0_g1_196_TPlot.pdf
TRINITY_DN891_c0_g1:197	si_a728	TRINITY_DN891_c0_g1	185	208	197	-40.30	-28.50	0.707196029776675	10.5	3-5,206-204;6-15,201-192;17-20,189-186	1-2,208-207[UP5];x-x,203-202[BULt];16-16,191-190[AILt];21-21,185-185[UP3]	.((((..((((((((((..(((..&..)))--))))))))))-.)))).	CGGGGAGGAAGAUGCCCCCGAGGA&UACUC--GGGCAUCUUU-ACCCCU	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN891_c0_g1_197_TPlot.pdf
TRINITY_DN891_c0_g1:2247	si_a139	TRINITY_DN891_c0_g1	2236	2257	2247	-25.90	-17.20	0.664092664092664	10	3-7,2255-2251;9-21,2248-2236	1-2,2257-2256[UP5];8-8,2250-2249[AILt]	(((((((((((((..(((((..&..)))))-.)))))))))))))	GGACGACGACGAUAGAAUUGGG&AGUAAUU-AAUCGUUGUUGUUU	3	0.999924725628826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN891_c0_g1_2247_TPlot.pdf
TRINITY_DN891_c0_g1:268	si_s808	TRINITY_DN891_c0_g1	257	278	268	-28.60	-19.10	0.667832167832168	8.5	2-6,277-273;8-19,270-259	1-1,278-278[UP5];7-7,272-271[AILt];20-21,258-257[UP3]	..((((((((((((..(((((.&.)))))-.))))))))))))..	UAAAGGAGGGGUAAAGGAAGAC&AUCUUC-GUUACCUUUUCUUAA	3	0.999999999686623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN891_c0_g1_268_TPlot.pdf
TRINITY_DN891_c0_g1:270	si_s806	TRINITY_DN891_c0_g1	259	280	270	-28.60	-18.80	0.657342657342657	10.5	4-8,277-273;10-21,270-259	1-3,280-278[UP5];9-9,272-271[AILt]	((((((((((((..(((((...&...)))))-.))))))))))))	AAGGAGGGGUAAAGGAAGACGA&UUAUCUUC-GUUACCUUUUCUU	4	0.999999999999952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN891_c0_g1_270_TPlot.pdf
TRINITY_DN891_c0_g1:273	si_s75	TRINITY_DN891_c0_g1	261	282	273	-24.00	-16.30	0.679166666666667	8	1-4,282-279;6-14,277-269;15-21,267-261	5-5,278-278[SIL];x-x,268-268[BULt]	(((((((.(((((((((.((((&)))).)))))))))-)))))))	GGAGGGGUAAAGGAAGACGAUG&UAUUUUUUUUCUUU-CCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN891_c0_g1_273_TPlot.pdf
TRINITY_DN891_c0_g1:278	si_a500	TRINITY_DN891_c0_g1	267	286	278	-34.40	-23.00	0.668604651162791	8	1-5,286-282;8-18,280-270	6-7,281-281[AILq];19-21,269-267[UP3]	...(((((((((((.-(((((&)))))..)))))))))))...	GUAAAGGAAGACGAU-GACGA&UCGUUUUUCGUCUUCCUUGGA	2	0.999982268446539	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN891_c0_g1_278_TPlot.pdf
TRINITY_DN891_c0_g1:279	si_a499	TRINITY_DN891_c0_g1	268	287	279	-35.20	-26.10	0.741477272727273	7	1-6,287-282;9-19,280-270	7-8,281-281[AILq];20-21,269-268[UP3]	..(((((((((((.-((((((&))))))..)))))))))))..	UAAAGGAAGACGAU-GACGAC&GUCGUUUUUCGUCUUCCUUGG	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN891_c0_g1_279_TPlot.pdf
TRINITY_DN891_c0_g1:280	si_a498	TRINITY_DN891_c0_g1	269	288	280	-33.50	-26.30	0.785074626865672	7	2-7,287-282;10-20,280-270	1-1,288-288[UP5];8-9,281-281[AILq];21-21,269-269[UP3]	.(((((((((((.-((((((.&.))))))..))))))))))).	AAAGGAAGACGAU-GACGACU&UGUCGUUUUUCGUCUUCCUUG	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN891_c0_g1_280_TPlot.pdf
TRINITY_DN891_c0_g1:282	si_a496	TRINITY_DN891_c0_g1	271	290	282	-32.40	-25.00	0.771604938271605	10	4-9,287-282;12-21,280-271	1-3,290-288[UP5];10-11,281-281[AILq]	((((((((((.-((((((...&...))))))..))))))))))	AGGAAGACGAU-GACGACUUU&UAUGUCGUUUUUCGUCUUCCU	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN891_c0_g1_282_TPlot.pdf
TRINITY_DN891_c0_g1:317	si_a786	TRINITY_DN891_c0_g1	307	327	317	-26.60	-18.10	0.680451127819549	6	1-6,327-322;8-14,319-313;16-21,312-307	7-7,321-320[AILt];15-15,x-x[BULq]	((((((-(((((((..((((((&))))))-.))))))).))))))	GGAAAA-AGAAAAAGGGGAAGA&UCUUCU-AUUUUUCUAUUUUCC	2	0.999999328332202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN891_c0_g1_317_TPlot.pdf
TRINITY_DN891_c0_g1:323	si_s79	TRINITY_DN891_c0_g1	312	332	323	-26.20	-20.50	0.782442748091603	3.5	1-15,332-318;17-21,316-312	16-16,317-317[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	AAGAAAAAGGGGAAGAAAAGA&UUUUUUCUUUCCUUUCUUCUU	2	0.999936891661079	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN891_c0_g1_323_TPlot.pdf
TRINITY_DN891_c0_g1:325	si_s77	TRINITY_DN891_c0_g1	314	334	325	-25.50	-20.10	0.788235294117647	3.5	1-17,334-318;19-21,316-314	18-18,317-317[SIL]	(((.(((((((((((((((((&))))))))))))))))).)))	GAAAAAGGGGAAGAAAAGAAA&UUUUUUUUCUUUCCUUUCUUC	3	0.99999942743602	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN891_c0_g1_325_TPlot.pdf
TRINITY_DN891_c0_g1:326	si_s76	TRINITY_DN891_c0_g1	312	335	326	-23.60	-18.50	0.783898305084746	6	2-16,334-320;17-21,316-312	1-1,335-335[UP5];x-x,319-317[BULt]	(((((...(((((((((((((((.&.)))))))))))))))---)))))	AAGAAAAAGGGGAAGAAAAGAAAA&AUUUUUUUUCUUUCCU---UUCUU	4	0.999999999153632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN891_c0_g1_326_TPlot.pdf
TRINITY_DN891_c0_g1:327	si_s75	TRINITY_DN891_c0_g1	316	336	327	-24.00	-17.90	0.745833333333333	7	3-19,334-318	1-2,336-335[UP5];20-21,317-316[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAGGGGAAGAAAAGAAAAG&UAUUUUUUUUCUUUCCUUUCU	2	0.999999911673373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN891_c0_g1_327_TPlot.pdf
TRINITY_DN891_c0_g1:328	si_s74	TRINITY_DN891_c0_g1	317	337	328	-25.00	-17.90	0.716	8	4-20,334-318	1-3,337-335[UP5];21-21,317-317[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGGGGAAGAAAAGAAAAGC&CUAUUUUUUUUCUUUCCUUUC	2	0.999999822667599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN891_c0_g1_328_TPlot.pdf
TRINITY_DN891_c0_g1:329	si_s73	TRINITY_DN891_c0_g1	318	341	329	-24.00	-19.50	0.8125	8	1-4,341-338;5-21,334-318	x-x,337-335[BULt]	(((((((((((((((((...((((&))))---)))))))))))))))))	AAGGGGAAGAAAAGAAAAGCUAGA&UCUA---UUUUUUUUCUUUCCUUU	4	0.995520742871269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN891_c0_g1_329_TPlot.pdf
TRINITY_DN891_c0_g1:330	si_s72	TRINITY_DN891_c0_g1	319	342	330	-24.10	-19.00	0.788381742738589	8.5	1-5,342-338;6-21,334-319	x-x,337-335[BULt]	((((((((((((((((...(((((&)))))---))))))))))))))))	AGGGGAAGAAAAGAAAAGCUAGAG&UUCUA---UUUUUUUUCUUUCCUU	2	0.99591812070094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN891_c0_g1_330_TPlot.pdf
TRINITY_DN891_c0_g1:331	si_s71	TRINITY_DN891_c0_g1	320	343	331	-25.70	-20.90	0.813229571984436	9	1-6,343-338;7-21,334-320	x-x,337-335[BULt]	(((((((((((((((...((((((&))))))---)))))))))))))))	GGGGAAGAAAAGAAAAGCUAGAGG&CUUCUA---UUUUUUUUCUUUCCU	0	0.0773892186354179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN891_c0_g1_331_TPlot.pdf
TRINITY_DN891_c0_g1:332	si_s70	TRINITY_DN891_c0_g1	321	344	332	-25.80	-21.60	0.837209302325581	8.5	1-7,344-338;8-21,334-321	x-x,337-335[BULt]	((((((((((((((...(((((((&)))))))---))))))))))))))	GGGAAGAAAAGAAAAGCUAGAGGU&ACUUCUA---UUUUUUUUCUUUCC	2	0.537755463263081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN891_c0_g1_332_TPlot.pdf
TRINITY_DN891_c0_g1:333	si_s69	TRINITY_DN891_c0_g1	322	345	333	-23.40	-18.60	0.794871794871795	9.5	2-8,344-338;9-21,334-322	1-1,345-345[UP5];x-x,337-335[BULt]	(((((((((((((...(((((((.&.)))))))---)))))))))))))	GGAAGAAAAGAAAAGCUAGAGGUG&AACUUCUA---UUUUUUUUCUUUC	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN891_c0_g1_333_TPlot.pdf
TRINITY_DN891_c0_g1:352	si_s86	TRINITY_DN891_c0_g1	342	361	352	-32.90	-24.50	0.74468085106383	4	1-11,361-351;13-21,350-342	12-12,x-x[BULq]	(((((((((-(((((((((((&))))))))))).)))))))))	GGUGAAGAA-AAGAAGGGAAA&UUUCCUUUCUUCUUCUUCGCU	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN891_c0_g1_352_TPlot.pdf
TRINITY_DN891_c0_g1:362	si_s76	TRINITY_DN891_c0_g1	351	371	362	-23.60	-23.80	1	2.5	2-21,370-351	1-1,371-371[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AAGAAGGGAAAGAAAAAGAAG&AUUUUUUUUCUUUCCUUUCUU	3	0.0200403298382047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN891_c0_g1_362_TPlot.pdf
TRINITY_DN891_c0_g1:364	si_s74	TRINITY_DN891_c0_g1	353	373	364	-25.00	-21.60	0.864	6.5	4-21,370-353	1-3,373-371[UP5]	((((((((((((((((((...&...))))))))))))))))))	GAAGGGAAAGAAAAAGAAGAA&CUAUUUUUUUUCUUUCCUUUC	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN891_c0_g1_364_TPlot.pdf
TRINITY_DN891_c0_g1:5204	si_s93	TRINITY_DN891_c0_g1	5193	5217	5204	-34.80	-24.00	0.689655172413793	12.5	1-3,5217-5215;5-8,5213-5210;9-21,5205-5193	4-4,5214-5214[SIL];x-x,5209-5206[BULt]	(((((((((((((....((((.(((&))).))))----)))))))))))))	AGUCCGAAGUGAAAUCCGAAGUGGA&UCUUCUUC----UUCGCUUCGGAUU	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN891_c0_g1_5204_TPlot.pdf
TRINITY_DN891_c0_g1:5250	si_s77	TRINITY_DN891_c0_g1	5237	5259	5250	-25.50	-19.10	0.749019607843137	7	1-11,5259-5249;12-17,5247-5242;18-21,5240-5237	x-x,5248-5248[BULt];x-x,5241-5241[BULt]	((((.((((((.(((((((((((&)))))))))))-))))))-))))	GAAGAAAAGGAUAAGAAGGAGGA&UUUUUUUUCUU-UCCUUU-CUUC	2	0.999999975489826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN891_c0_g1_5250_TPlot.pdf
TRINITY_DN891_c0_g1:5261	si_s81	TRINITY_DN891_c0_g1	5250	5271	5261	-28.90	-20.50	0.709342560553633	7	1-9,5271-5263;11-21,5260-5250	10-10,5262-5261[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	AGAAGGAGGAAAAGGAAGAAGA&UUUUCUUUC-CUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN891_c0_g1_5261_TPlot.pdf
TRINITY_DN891_c0_g1:5262	si_a785	TRINITY_DN891_c0_g1	5251	5272	5262	-25.90	-18.00	0.694980694980695	7.5	1-7,5272-5266;9-15,5263-5257;17-21,5255-5251	8-8,5265-5264[AILt];16-16,5256-5256[SIL]	(((((.(((((((..(((((((&)))))))-.))))))).)))))	GAAGGAGGAAAAGGAAGAAGAG&CUCUUCU-AUUUUUCUAUUUUC	2	0.999999127700354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN891_c0_g1_5262_TPlot.pdf
TRINITY_DN891_c0_g1:5263	si_s76	TRINITY_DN891_c0_g1	5252	5272	5263	-23.60	-16.00	0.677966101694915	6	2-13,5271-5260;15-21,5258-5252	1-1,5272-5272[UP5];14-14,5259-5259[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	AAGGAGGAAAAGGAAGAAGAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN891_c0_g1_5263_TPlot.pdf
TRINITY_DN891_c0_g1:5266	si_a787	TRINITY_DN891_c0_g1	5256	5275	5266	-26.30	-17.30	0.657794676806084	6.5	1-5,5275-5271;7-13,5269-5263;15-20,5262-5257	6-6,5270-5270[SIL];14-14,x-x[BULq];21-21,5256-5256[UP3]	.((((((-(((((((.(((((&))))).))))))).)))))).	AGGAAAA-GGAAGAAGAGGAG&CUUCUAUUUUUCUAUUUUCCA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN891_c0_g1_5266_TPlot.pdf
TRINITY_DN891_c0_g1:5267	si_s72	TRINITY_DN891_c0_g1	5255	5275	5267	-24.10	-15.70	0.651452282157676	7.5	1-4,5275-5272;6-17,5271-5260;18-21,5258-5255	5-5,x-x[BULq];x-x,5259-5259[BULt]	((((.((((((((((((-((((&)))).))))))))))))-))))	GAGGAAAAGGAAGAAGA-GGAG&UUCUAUUUUUUUUCUUU-CCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN891_c0_g1_5267_TPlot.pdf
TRINITY_DN891_c0_g1:5269	si_s70	TRINITY_DN891_c0_g1	5257	5277	5269	-25.80	-17.60	0.682170542635659	7.5	1-6,5277-5272;8-19,5271-5260;20-21,5258-5257	7-7,x-x[BULq];x-x,5259-5259[BULt]	((.((((((((((((-((((((&)))))).))))))))))))-))	GGAAAAGGAAGAAGA-GGAGGU&ACUUCUAUUUUUUUUCUUU-CC	2	0.999999999937654	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN891_c0_g1_5269_TPlot.pdf
TRINITY_DN891_c0_g1:5275	si_s810	TRINITY_DN891_c0_g1	5264	5287	5275	-27.90	-18.70	0.670250896057348	13.5	1-4,5287-5284;5-17,5280-5268	x-x,5283-5281[BULt];18-21,5267-5264[UP3]	....(((((((((((((...((((&))))---)))))))))))))....	GAAGAAGAGGAGGUGAUAAAGAAG&CUUC---GUUACCUUUUCUUAAUA	3	0.999999787662861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN891_c0_g1_5275_TPlot.pdf
TRINITY_DN891_c0_g1:5278	si_s807	TRINITY_DN891_c0_g1	5267	5287	5278	-28.90	-19.40	0.671280276816609	9	3-6,5285-5282;8-20,5280-5268	1-2,5287-5286[UP5];7-7,5281-5281[SIL];21-21,5267-5267[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	GAAGAGGAGGUGAUAAAGAAG&UAUCUUCGUUACCUUUUCUUA	2	0.999992672245195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN891_c0_g1_5278_TPlot.pdf
TRINITY_DN891_c0_g1:5279	si_s806	TRINITY_DN891_c0_g1	5268	5288	5279	-28.60	-19.00	0.664335664335664	10	4-7,5285-5282;9-21,5280-5268	1-3,5288-5286[UP5];8-8,5281-5281[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	AAGAGGAGGUGAUAAAGAAGG&UUAUCUUCGUUACCUUUUCUU	2	0.999999843420408	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN891_c0_g1_5279_TPlot.pdf
TRINITY_DN891_c0_g1:5282	si_s90	TRINITY_DN891_c0_g1	5271	5291	5282	-35.30	-23.00	0.651558073654391	8	1-10,5291-5282;13-19,5279-5273	11-12,5281-5280[SIL];20-21,5272-5271[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	AGGAGGUGAUAAAGAAGGAAG&CUUUCUUCUUCUUCGCUUCGG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN891_c0_g1_5282_TPlot.pdf
TRINITY_DN891_c0_g1:5283	si_s89	TRINITY_DN891_c0_g1	5272	5292	5283	-35.30	-23.40	0.662889518413598	7	2-11,5291-5282;14-20,5279-5273	1-1,5292-5292[UP5];12-13,5281-5280[SIL];21-21,5272-5272[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	GGAGGUGAUAAAGAAGGAAGA&CCUUUCUUCUUCUUCGCUUCG	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN891_c0_g1_5283_TPlot.pdf
TRINITY_DN891_c0_g1:5284	si_s88	TRINITY_DN891_c0_g1	5273	5293	5284	-34.80	-22.80	0.655172413793104	7	3-12,5291-5282;15-21,5279-5273	1-2,5293-5292[UP5];13-14,5281-5280[SIL]	(((((((..((((((((((..&..))))))))))..)))))))	GAGGUGAUAAAGAAGGAAGAG&UCCUUUCUUCUUCUUCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN891_c0_g1_5284_TPlot.pdf
TRINITY_DN891_c0_g1:5330	si_s81	TRINITY_DN891_c0_g1	5319	5340	5330	-28.90	-19.20	0.664359861591695	8	1-8,5340-5333;10-20,5330-5320	9-9,5332-5331[AILt];21-21,5319-5319[UP3]	.(((((((((((..((((((((&))))))))-.))))))))))).	UGAAGGAGGAAGUUAAAGAGGA&UUUUCUUU-CCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN891_c0_g1_5330_TPlot.pdf
TRINITY_DN891_c0_g1:5331	si_s80	TRINITY_DN891_c0_g1	5320	5341	5331	-28.20	-19.20	0.680851063829787	7.5	1-9,5341-5333;11-21,5330-5320	10-10,5332-5331[AILt]	(((((((((((..(((((((((&)))))))))-.)))))))))))	GAAGGAGGAAGUUAAAGAGGAG&UUUUUCUUU-CCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN891_c0_g1_5331_TPlot.pdf
TRINITY_DN891_c0_g1:5447	si_s80	TRINITY_DN891_c0_g1	5434	5457	5447	-28.20	-19.20	0.680851063829787	8	1-9,5457-5449;10-13,5447-5444;14-21,5441-5434	x-x,5448-5448[BULt];x-x,5443-5442[BULt]	((((((((..((((.(((((((((&)))))))))-))))--))))))))	GGAGAAGGUUAAGGUGGAGAAGAA&UUUUUCUUU-CCUU--UCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN891_c0_g1_5447_TPlot.pdf
TRINITY_DN891_c0_g1:5451	si_s77	TRINITY_DN891_c0_g1	5437	5460	5451	-25.50	-16.70	0.654901960784314	9.5	1-12,5460-5449;13-16,5447-5444;17-21,5441-5437	x-x,5448-5448[BULt];x-x,5443-5442[BULt]	(((((..((((.((((((((((((&))))))))))))-))))--)))))	GAAGGUUAAGGUGGAGAAGAAGGA&UUUUUUUUCUUU-CCUU--UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN891_c0_g1_5451_TPlot.pdf
TRINITY_DN891_c0_g1:5454	si_s89	TRINITY_DN891_c0_g1	5443	5463	5454	-35.30	-25.70	0.728045325779037	5.5	2-19,5462-5445	1-1,5463-5463[UP5];20-21,5444-5443[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAAGGUGGAGAAGAAGGAAGA&CCUUUCUUCUUCUUCGCUUCG	3	0.999701812562784	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN891_c0_g1_5454_TPlot.pdf
TRINITY_DN891_c0_g1:5455	si_s88	TRINITY_DN891_c0_g1	5444	5464	5455	-34.80	-25.70	0.738505747126437	6.5	3-20,5462-5445	1-2,5464-5463[UP5];21-21,5444-5444[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AAGGUGGAGAAGAAGGAAGAU&UCCUUUCUUCUUCUUCGCUUC	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN891_c0_g1_5455_TPlot.pdf
TRINITY_DN891_c0_g1:5461	si_s70	TRINITY_DN891_c0_g1	5449	5472	5461	-25.80	-18.40	0.713178294573643	8	1-6,5472-5467;7-17,5464-5454;18-21,5452-5449	x-x,5466-5465[BULt];x-x,5453-5453[BULt]	((((.(((((((((((..((((((&))))))--)))))))))))-))))	GGAGAAGAAGGAAGAUGAAGAAGU&ACUUCU--AUUUUUUUUCU-UUCC	4	0.999999999416298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN891_c0_g1_5461_TPlot.pdf
TRINITY_DN891_c0_g1:5462	si_s69	TRINITY_DN891_c0_g1	5451	5473	5462	-23.40	-16.50	0.705128205128205	8.5	2-7,5472-5467;8-20,5464-5452	1-1,5473-5473[UP5];x-x,5466-5465[BULt];21-21,5451-5451[UP3]	.(((((((((((((..((((((.&.))))))--))))))))))))).	AGAAGAAGGAAGAUGAAGAAGUG&AACUUCU--AUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN891_c0_g1_5462_TPlot.pdf
TRINITY_DN891_c0_g1:5468	si_a496	TRINITY_DN891_c0_g1	5457	5479	5468	-32.40	-21.90	0.675925925925926	8	1-4,5479-5476;5-7,5474-5472;8-21,5470-5457	x-x,5475-5475[BULt];x-x,5471-5471[BULt]	((((((((((((((.(((.((((&))))-)))-))))))))))))))	AGGAAGAUGAAGAAGUGAGCGUG&UAUG-UCG-UUUUUCGUCUUCCU	4	0.999999994346383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN891_c0_g1_5468_TPlot.pdf
TRINITY_DN891_c0_g1:915	si_a502	TRINITY_DN891_c0_g1	904	924	915	-32.10	-22.30	0.694704049844237	8	3-10,922-915;12-21,913-904	1-2,924-923[UP5];11-11,914-914[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AUUUCGAGGACGACGAGGAUA&GUUUUUCGUCUUCCUUGGAAU	4	0.999997234426688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN891_c0_g1_915_TPlot.pdf
TRINITY_DN8921_c0_g2:1385	si_s206	TRINITY_DN8921_c0_g2	1372	1394	1385	-33.00	-21.60	0.654545454545455	10	4-13,1391-1382;14-16,1380-1378;17-20,1376-1373	1-3,1394-1392[UP5];x-x,1381-1381[BULt];x-x,1377-1377[BULt];21-21,1372-1372[UP3]	.((((.(((.((((((((((...&...))))))))))-)))-)))).	AUCGAUACAUCGGCUGGUACCGC&AAUGUACCAGUUG-UGU-UCGAA	2	0.993115340016426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s206_TRINITY_DN8921_c0_g2_1385_TPlot.pdf
TRINITY_DN8921_c0_g2:1611	si_a56	TRINITY_DN8921_c0_g2	1600	1621	1611	-38.90	-26.92	0.692030848329049	10.5	1-9,1621-1613;13-20,1608-1601	10-12,1612-1609[AILt];21-21,1600-1600[UP3]	.((((((((....(((((((((&)))))))))-...)))))))).	AGGAAGAAGACCCGUCGGCUCC&GGAGUCGAC-UCGCUUCUUUCA	4	0.930251845320104	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN8921_c0_g2_1611_TPlot.pdf
TRINITY_DN8921_c0_g2:1703	si_a118	TRINITY_DN8921_c0_g2	1691	1712	1703	-30.70	-21.20	0.690553745928339	8	2-6,1711-1707;8-16,1705-1697;17-19,1695-1693	1-1,1712-1712[UP5];7-7,1706-1706[SIL];x-x,1696-1696[BULt];20-21,1692-1691[UP3]	..(((.(((((((((.(((((.&.))))).)))))))))-)))..	UCUGCGUAUAAGACGCGCUCGG&ACGAGCUUGUUUUAUA-GCAAU	4	0.975659767160631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a118_TRINITY_DN8921_c0_g2_1703_TPlot.pdf
TRINITY_DN8921_c0_g2:1705	si_a116	TRINITY_DN8921_c0_g2	1693	1714	1705	-31.10	-20.90	0.672025723472669	9.5	4-8,1711-1707;10-18,1705-1697;19-21,1695-1693	1-3,1714-1712[UP5];9-9,1706-1706[SIL];x-x,1696-1696[BULt]	(((.(((((((((.(((((...&...))))).)))))))))-)))	UGCGUAUAAGACGCGCUCGGAG&AUACGAGCUUGUUUUAUA-GCA	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN8921_c0_g2_1705_TPlot.pdf
TRINITY_DN8921_c0_g2:434	si_a535	TRINITY_DN8921_c0_g2	423	443	434	-39.60	-26.40	0.666666666666667	8.5	1-3,443-441;5-12,439-432;14-16,430-428	4-4,440-440[SIL];13-13,431-431[SIL];17-21,427-423[UP3]	.....(((.((((((((.(((&))).)))))))).))).....	CCGGCGGAGCGAUCGCUGGCG&CGCGAGCGAUCGGUUCAAUCU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a535_TRINITY_DN8921_c0_g2_434_TPlot.pdf
TRINITY_DN8921_c0_g2:439	si_a530	TRINITY_DN8921_c0_g2	428	458	439	-43.70	-29.10	0.665903890160183	23.5	1-5,458-454;6-8,443-441;10-17,439-432;19-21,430-428	x-x,453-444[BULt];9-9,440-440[SIL];18-18,431-431[SIL]	(((.((((((((.(((..........(((((&)))))----------))).)))))))).)))	GGAGCGAUCGCUGGCGGCGUGAUCAAUGUCC&GGACA----------CGCGAGCGAUCGGUUC	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a530_TRINITY_DN8921_c0_g2_439_TPlot.pdf
TRINITY_DN8924_c0_g1:804	si_a374	TRINITY_DN8924_c0_g1	793	813	804	-25.60	-18.00	0.703125	7.5	1-16,813-798	17-21,797-793[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUCAAGAAGUUGUUUUUGAUC&GAUCAAAAAUGAUUUCGAAUU	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a374_TRINITY_DN8924_c0_g1_804_TPlot.pdf
TRINITY_DN8932_c0_g1:777	si_a856	TRINITY_DN8932_c0_g1	766	786	777	-24.70	-16.80	0.680161943319838	6.5	1-4,786-783;6-12,781-775;14-19,773-768	5-5,782-782[SIL];13-13,774-774[SIL];20-21,767-766[UP3]	..((((((.(((((((.((((&)))).))))))).))))))..	CGUAGUAAGUGGAUUUGGAGU&ACUUGAAAUCCAAUUAUUAAA	4	0.919408959977658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a856_TRINITY_DN8932_c0_g1_777_TPlot.pdf
TRINITY_DN8932_c0_g1:778	si_a855	TRINITY_DN8932_c0_g1	767	787	778	-24.70	-18.00	0.728744939271255	5.5	1-5,787-783;7-13,781-775;15-20,773-768	6-6,782-782[SIL];14-14,774-774[SIL];21-21,767-767[UP3]	.((((((.(((((((.(((((&))))).))))))).)))))).	GUAGUAAGUGGAUUUGGAGUU&AACUUGAAAUCCAAUUAUUAA	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN8932_c0_g1_778_TPlot.pdf
TRINITY_DN8932_c0_g1:779	si_a854	TRINITY_DN8932_c0_g1	768	788	779	-25.00	-18.90	0.756	4.5	1-6,788-783;8-14,781-775;16-21,773-768	7-7,782-782[SIL];15-15,774-774[SIL]	((((((.(((((((.((((((&)))))).))))))).))))))	UAGUAAGUGGAUUUGGAGUUA&UAACUUGAAAUCCAAUUAUUA	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN8932_c0_g1_779_TPlot.pdf
TRINITY_DN8938_c0_g1:1271	si_s87	TRINITY_DN8938_c0_g1	1261	1280	1271	-32.90	-22.60	0.68693009118541	9	4-15,1277-1266;17-21,1265-1261	1-3,1280-1278[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	GGGCG-AGAAGGAGGAAGAAC&UUCCUUUCUUCUUCUUCGCUU	4	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8938_c0_g1_1271_TPlot.pdf
TRINITY_DN8938_c0_g1:1272	si_s86	TRINITY_DN8938_c0_g1	1262	1281	1272	-32.90	-22.30	0.677811550151976	10.5	5-16,1277-1266;18-21,1265-1262	1-4,1281-1278[UP5];17-17,x-x[BULq]	((((-((((((((((((....&....)))))))))))).))))	GGCG-AGAAGGAGGAAGAACA&UUUCCUUUCUUCUUCUUCGCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN8938_c0_g1_1272_TPlot.pdf
TRINITY_DN8941_c0_g2:689	si_a899	TRINITY_DN8941_c0_g2	678	698	689	-18.70	-12.50	0.668449197860963	11	6-21,693-678	1-5,698-694[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUUUAUAUUAUUUGUAUCAC&UAAUAAUAAGUAAUAUAAAAA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN8941_c0_g2_689_TPlot.pdf
TRINITY_DN8944_c0_g1:5138	si_a152	TRINITY_DN8944_c0_g1	5126	5147	5138	-29.20	-19.20	0.657534246575342	10	2-9,5146-5139;12-13,5136-5135;14-19,5133-5128	1-1,5147-5147[UP5];10-11,5138-5137[SIL];x-x,5134-5134[BULt];20-21,5127-5126[UP3]	..((((((.((..((((((((.&.))))))))..))-))))))..	GCGAUUGAUCCGGAGAACAGCU&UGUUGUUUUAAGG-UCAAUCUA	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN8944_c0_g1_5138_TPlot.pdf
TRINITY_DN8944_c0_g1:625	si_a545	TRINITY_DN8944_c0_g1	612	634	625	-28.10	-18.70	0.665480427046263	8	1-10,634-625;11-13,623-621;15-19,618-614	x-x,624-624[BULt];14-14,620-619[AILt];20-21,613-612[UP3]	..(((((..(((.((((((((((&))))))))))-)))-.)))))..	UCAAAGACUAUGUGAUUGAGCCG&CGGUUCAAUC-UAU-UUCUUUAU	4	0.999857414968473	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN8944_c0_g1_625_TPlot.pdf
TRINITY_DN8944_c0_g1:626	si_a544	TRINITY_DN8944_c0_g1	613	635	626	-28.90	-20.30	0.70242214532872	7	1-11,635-625;12-14,623-621;16-20,618-614	x-x,624-624[BULt];15-15,620-619[AILt];21-21,613-613[UP3]	.(((((..(((.(((((((((((&)))))))))))-)))-.))))).	CAAAGACUAUGUGAUUGAGCCGA&UCGGUUCAAUC-UAU-UUCUUUA	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN8944_c0_g1_626_TPlot.pdf
TRINITY_DN8944_c0_g1:669	si_s312	TRINITY_DN8944_c0_g1	658	679	669	-29.00	-19.10	0.658620689655173	12	4-7,676-673;9-20,670-659	1-3,679-677[UP5];8-8,672-671[AILt];21-21,658-658[UP3]	.((((((((((((..((((...&...))))-.)))))))))))).	GAGCAAGGAGGAUCUGAAUCCG&AAAAUUC-UGUCCUUCUUGUUA	2	0.99999997753485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN8944_c0_g1_669_TPlot.pdf
TRINITY_DN8948_c0_g1:1786	si_s78	TRINITY_DN8948_c0_g1	1774	1795	1786	-26.20	-18.70	0.713740458015267	7.5	1-10,1795-1786;11-17,1784-1778;19-20,1776-1775	x-x,1785-1785[BULt];18-18,1777-1777[SIL];21-21,1774-1774[UP3]	.((.(((((((.((((((((((&))))))))))-))))))).)).	UGAUGAGAGGAGGAGGAAGAAA&UUUUUUUCUU-UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8948_c0_g1_1786_TPlot.pdf
TRINITY_DN8949_c0_g1:702	si_s772	TRINITY_DN8949_c0_g1	691	711	702	-23.20	-15.50	0.668103448275862	14.5	5-16,707-696	1-4,711-708[UP5];17-21,695-691[UP3]	.....((((((((((((....&....)))))))))))).....	CAGCAGGCAGUAGUAGUGAAG&AUUAAUUACUAUUGCUAUAAA	4	0.99999174108694	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN8949_c0_g1_702_TPlot.pdf
TRINITY_DN8959_c1_g2:1403	si_s439	TRINITY_DN8959_c1_g2	1392	1412	1403	-21.50	-13.98	0.650232558139535	9.5	3-10,1410-1403;14-21,1399-1392	1-2,1412-1411[UP5];11-13,1402-1400[SIL]	((((((((...((((((((..&..))))))))...))))))))	UGUUGUAUUUUAUAUGUGAAG&AAUUACAUAUUAUAUAUAACA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN8959_c1_g2_1403_TPlot.pdf
TRINITY_DN895_c0_g1:796	si_s85	TRINITY_DN895_c0_g1	785	804	796	-33.80	-23.20	0.686390532544379	6	3-8,802-797;10-16,796-790;18-21,788-785	1-2,804-803[UP5];9-9,x-x[BULq];17-17,789-789[SIL]	((((.(((((((-((((((..&..)))))).))))))).))))	GCGACGAAGAAG-AAGGAAUU&CUUUCCUUUCUUCUUCUUCGC	4	0.999999999988679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN895_c0_g1_796_TPlot.pdf
TRINITY_DN8961_c0_g1:168	si_s70	TRINITY_DN8961_c0_g1	157	177	168	-25.80	-17.10	0.662790697674419	5	1-4,177-174;6-17,172-161;19-21,159-157	5-5,173-173[SIL];18-18,160-160[SIL]	(((.((((((((((((.((((&)))).)))))))))))).)))	GGAUGGGAAAAGAAUAAAAGU&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8961_c0_g1_168_TPlot.pdf
TRINITY_DN8962_c1_g1:1552	si_a366	TRINITY_DN8962_c1_g1	1541	1561	1552	-28.80	-21.70	0.753472222222222	7	3-20,1559-1542	1-2,1561-1560[UP5];21-21,1541-1541[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	UUCAUUUUUGGUUCGAUUAUA&UUUGAUCGGAUCAAAAAUGAU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a366_TRINITY_DN8962_c1_g1_1552_TPlot.pdf
TRINITY_DN8962_c1_g1:1553	si_a365	TRINITY_DN8962_c1_g1	1542	1562	1553	-28.60	-21.60	0.755244755244755	8	4-21,1559-1542	1-3,1562-1560[UP5]	((((((((((((((((((...&...))))))))))))))))))	UCAUUUUUGGUUCGAUUAUAG&UUUUGAUCGGAUCAAAAAUGA	2	0.0719567048213184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a365_TRINITY_DN8962_c1_g1_1553_TPlot.pdf
TRINITY_DN8963_c0_g1:442	si_s735	TRINITY_DN8963_c0_g1	431	452	442	-35.50	-23.30	0.656338028169014	8	1-7,452-446;8-12,444-440;14-18,438-434	x-x,445-445[BULt];13-13,439-439[SIL];19-21,433-431[UP3]	...(((((.(((((.(((((((&)))))))-))))).)))))...	AUUGUCUGAUCACCUCGUCUGG&CUAGACG-GGUGAAUAGAUUGA	2	0.554696708097772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s735_TRINITY_DN8963_c0_g1_442_TPlot.pdf
TRINITY_DN8963_c0_g1:446	si_s732	TRINITY_DN8963_c0_g1	434	455	446	-34.40	-23.30	0.677325581395349	10	4-10,452-446;11-15,444-440;17-21,438-434	1-3,455-453[UP5];x-x,445-445[BULt];16-16,439-439[SIL]	(((((.(((((.(((((((...&...)))))))-))))).)))))	GUCUGAUCACCUCGUCUGGUUG&UAUCUAGACG-GGUGAAUAGAU	2	0.311599483933487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s732_TRINITY_DN8963_c0_g1_446_TPlot.pdf
TRINITY_DN8963_c0_g2:1549	si_a236	TRINITY_DN8963_c0_g2	1537	1558	1549	-35.00	-23.60	0.674285714285714	5	2-9,1557-1550;11-17,1548-1542;18-21,1540-1537	1-1,1558-1558[UP5];10-10,1549-1549[SIL];x-x,1541-1541[BULt]	((((.(((((((.((((((((.&.)))))))).)))))))-))))	GGGGAGGUUGAACUGAUUAUAU&CUAUAAUCAAUUCGAUC-CCCC	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a236_TRINITY_DN8963_c0_g2_1549_TPlot.pdf
TRINITY_DN8963_c0_g2:1694	si_s419	TRINITY_DN8963_c0_g2	1683	1703	1694	-25.60	-19.00	0.7421875	6	1-6,1703-1698;8-12,1696-1692;14-20,1690-1684	7-7,1697-1697[SIL];13-13,1691-1691[SIL];21-21,1683-1683[UP3]	.(((((((.(((((.((((((&)))))).))))).))))))).	CGUUGUUGAAUAGAUUGUGUC&GACAUAUUCUAUAUAACAAUA	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s419_TRINITY_DN8963_c0_g2_1694_TPlot.pdf
TRINITY_DN8963_c0_g2:1695	si_s418	TRINITY_DN8963_c0_g2	1684	1704	1695	-26.70	-18.90	0.707865168539326	6	2-7,1703-1698;9-13,1696-1692;15-21,1690-1684	1-1,1704-1704[UP5];8-8,1697-1697[SIL];14-14,1691-1691[SIL]	(((((((.(((((.((((((.&.)))))).))))).)))))))	GUUGUUGAAUAGAUUGUGUCA&CGACAUAUUCUAUAUAACAAU	2	0.501914900804364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s418_TRINITY_DN8963_c0_g2_1695_TPlot.pdf
TRINITY_DN8966_c0_g1:253	si_a784	TRINITY_DN8966_c0_g1	242	261	253	-24.70	-16.60	0.672064777327935	8.5	2-5,260-257;7-17,256-246	1-1,261-261[UP5];6-6,x-x[BULq];18-21,245-242[UP3]	....(((((((((((-((((.&.)))).)))))))))))....	AUAUUAGAGAGAUAG-AGAGA&ACUCUUCUAUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8966_c0_g1_253_TPlot.pdf
TRINITY_DN8967_c0_g1:340	si_s84	TRINITY_DN8967_c0_g1	329	355	340	-32.30	-22.50	0.696594427244582	17.5	1-6,355-350;7-20,343-330	x-x,349-344[BULt];21-21,329-329[UP3]	.((((((((((((((......((((((&))))))------)))))))))))))).	UGAAGGAGAAGAGGGUGUUUUGGAGGA&UCUUUC------CUUUCUUCUUCUUCG	3	0.999999999996835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8967_c0_g1_340_TPlot.pdf
TRINITY_DN8968_c0_g1:3934	si_a134	TRINITY_DN8968_c0_g1	3922	3944	3934	-28.20	-21.70	0.769503546099291	6	1-8,3944-3937;10-17,3934-3927;18-21,3925-3922	9-9,3936-3935[AILt];x-x,3926-3926[BULt]	((((.((((((((..((((((((&))))))))-.))))))))-))))	ACAAUCGAUUAGUAGACUAUUGC&GCAAUAGU-AAUUAAUCG-UUGU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a134_TRINITY_DN8968_c0_g1_3934_TPlot.pdf
TRINITY_DN8968_c0_g1:5205	si_a624	TRINITY_DN8968_c0_g1	5194	5214	5205	-32.30	-22.70	0.702786377708978	7.5	1-11,5214-5204;13-19,5202-5196	12-12,5203-5203[SIL];20-21,5195-5194[UP3]	..(((((((.(((((((((((&))))))))))).)))))))..	UCGUCGACACAAUGUGCCUGG&CUAGGCGUAUUAUGUCGAUUU	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN8968_c0_g1_5205_TPlot.pdf
TRINITY_DN8968_c0_g1:5207	si_a622	TRINITY_DN8968_c0_g1	5196	5216	5207	-35.10	-28.00	0.797720797720798	4.5	1-13,5216-5204;15-21,5202-5196	14-14,5203-5203[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GUCGACACAAUGUGCCUGGUC&GACUAGGCGUAUUAUGUCGAU	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN8968_c0_g1_5207_TPlot.pdf
TRINITY_DN8968_c0_g1:5208	si_a621	TRINITY_DN8968_c0_g1	5197	5217	5208	-36.40	-29.00	0.796703296703297	4	1-14,5217-5204;16-21,5202-5197	15-15,5203-5203[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UCGACACAAUGUGCCUGGUCG&CGACUAGGCGUAUUAUGUCGA	3	0.0396790448563853	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a621_TRINITY_DN8968_c0_g1_5208_TPlot.pdf
TRINITY_DN8968_c0_g1:5209	si_a620	TRINITY_DN8968_c0_g1	5198	5218	5209	-36.40	-27.20	0.747252747252747	4.5	1-15,5218-5204;17-21,5202-5198	16-16,5203-5203[SIL]	(((((.(((((((((((((((&))))))))))))))).)))))	CGACACAAUGUGCCUGGUCGG&UCGACUAGGCGUAUUAUGUCG	4	0.134542069930353	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a620_TRINITY_DN8968_c0_g1_5209_TPlot.pdf
TRINITY_DN8968_c0_g1:5454	si_a494	TRINITY_DN8968_c0_g1	5441	5463	5454	-29.50	-19.60	0.664406779661017	14	6-17,5458-5447;18-21,5444-5441	1-5,5463-5459[UP5];x-x,5446-5445[BULt]	((((..((((((((((((.....&.....))))))))))))--))))	GAAGAUGCGAGAGACGGCCGAAU&AAUAUGUCGUUUUUCGU--CUUC	3	0.999999999993441	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN8968_c0_g1_5454_TPlot.pdf
TRINITY_DN8968_c0_g1:8887	si_a491	TRINITY_DN8968_c0_g1	8876	8896	8887	-29.90	-21.78	0.728428093645485	9	2-4,8895-8893;8-21,8889-8876	1-1,8896-8896[UP5];5-7,8892-8890[SIL]	((((((((((((((...(((.&.)))...))))))))))))))	GACGAAGGACGACGAAGUCUC&UAGAAUAUGUCGUUUUUCGUC	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN8968_c0_g1_8887_TPlot.pdf
TRINITY_DN896_c0_g1:948	si_s73	TRINITY_DN896_c0_g1	937	955	948	-24.00	-15.78	0.6575	10.5	1-4,955-952;9-20,949-938	5-8,951-950[AILq];21-21,937-937[UP3]	.((((((((((((..--((((&))))....)))))))))))).	UAGGGAAAGAAGAUU--UAGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN896_c0_g1_948_TPlot.pdf
TRINITY_DN896_c0_g1:949	si_s72	TRINITY_DN896_c0_g1	938	956	949	-24.10	-15.98	0.663070539419087	10.5	2-5,955-952;10-21,949-938	1-1,956-956[UP5];6-9,951-950[AILq]	((((((((((((..--((((.&.))))....))))))))))))	AGGGAAAGAAGAUU--UAGAU&UUCUAUUUUUUUUCUUUCCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN896_c0_g1_949_TPlot.pdf
TRINITY_DN896_c0_g1:971	si_s818	TRINITY_DN896_c0_g1	960	980	971	-23.70	-16.00	0.675105485232067	8.5	1-7,980-974;9-17,972-964	8-8,973-973[SIL];18-21,963-960[UP3]	....(((((((((.(((((((&))))))).)))))))))....	AGCAUUAUUGUUAUGAAGAGG&CCUUUUCUUAAUAAUGAAAAA	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s818_TRINITY_DN896_c0_g1_971_TPlot.pdf
TRINITY_DN896_c0_g1:972	si_s817	TRINITY_DN896_c0_g1	961	981	972	-24.50	-16.00	0.653061224489796	8	2-8,980-974;10-18,972-964	1-1,981-981[UP5];9-9,973-973[SIL];19-21,963-961[UP3]	...(((((((((.(((((((.&.))))))).)))))))))...	GCAUUAUUGUUAUGAAGAGGA&ACCUUUUCUUAAUAAUGAAAA	2	0.984919490894431	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN896_c0_g1_972_TPlot.pdf
TRINITY_DN896_c0_g1:983	si_s82	TRINITY_DN896_c0_g1	972	993	983	-28.90	-19.10	0.660899653979239	6.5	1-7,993-987;9-19,984-974	8-8,986-985[AILt];20-21,973-972[UP3]	..(((((((((((..(((((((&)))))))-.)))))))))))..	AUGAAGAGGAAAGCCAAAGAAA&UUUCUUU-CCUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN896_c0_g1_983_TPlot.pdf
TRINITY_DN896_c0_g1:984	si_s81	TRINITY_DN896_c0_g1	973	994	984	-28.90	-19.30	0.667820069204152	6.5	2-8,993-987;10-20,984-974	1-1,994-994[UP5];9-9,986-985[AILt];21-21,973-973[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	UGAAGAGGAAAGCCAAAGAAAU&UUUUCUUU-CCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN896_c0_g1_984_TPlot.pdf
TRINITY_DN896_c0_g1:985	si_s80	TRINITY_DN896_c0_g1	974	995	985	-28.20	-18.90	0.670212765957447	7.5	3-9,993-987;11-21,984-974	1-2,995-994[UP5];10-10,986-985[AILt]	(((((((((((..(((((((..&..)))))))-.)))))))))))	GAAGAGGAAAGCCAAAGAAAUA&UUUUUCUUU-CCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN896_c0_g1_985_TPlot.pdf
TRINITY_DN8971_c0_g1:2988	si_s743	TRINITY_DN8971_c0_g1	2977	2997	2988	-29.00	-22.08	0.761379310344828	7.5	1-4,2997-2994;8-20,2990-2978	5-7,2993-2991[SIL];21-21,2977-2977[UP3]	.(((((((((((((...((((&))))...))))))))))))).	CUUUGAGGUCAAUCAAAUCAC&GUGAAUAGAUUGACCUUAAAA	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN8971_c0_g1_2988_TPlot.pdf
TRINITY_DN8971_c0_g1:2989	si_s742	TRINITY_DN8971_c0_g1	2978	2998	2989	-31.40	-21.78	0.693630573248408	7.5	2-5,2997-2994;9-21,2990-2978	1-1,2998-2998[UP5];6-8,2993-2991[SIL]	(((((((((((((...((((.&.))))...)))))))))))))	UUUGAGGUCAAUCAAAUCACA&GGUGAAUAGAUUGACCUUAAA	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN8971_c0_g1_2989_TPlot.pdf
TRINITY_DN8975_c1_g1:2837	si_s39	TRINITY_DN8975_c1_g1	2827	2846	2837	-22.30	-14.90	0.668161434977579	8	1-12,2846-2835;14-18,2834-2830	13-13,x-x[BULq];19-21,2829-2827[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	UUCUCCGG-UGUUGGAGAUUU&AAAUCUUUAAUAAUUGGAUUU	4	0.999981903788061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN8975_c1_g1_2837_TPlot.pdf
TRINITY_DN8975_c1_g1:4485	si_s202	TRINITY_DN8975_c1_g1	4473	4494	4485	-33.60	-22.48	0.669047619047619	8	1-4,4494-4491;8-18,4487-4477;19-21,4475-4473	5-7,4490-4488[SIL];x-x,4476-4476[BULt]	(((.(((((((((((...((((&))))...)))))))))))-)))	AACUACAACUGGUAUUCGCCAA&UUGGAAUGUACCAGUUGU-GUU	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s202_TRINITY_DN8975_c1_g1_4485_TPlot.pdf
TRINITY_DN8975_c1_g1:5268	si_s460	TRINITY_DN8975_c1_g1	5260	5277	5268	-30.80	-20.04	0.650649350649351	7	2-11,5276-5267;16-21,5265-5260	1-1,5277-5277[UP5];12-15,5266-5266[AILq]	((((((.---((((((((((.&.))))))))))....))))))	CGUUGGC---GAGAUAGUUGG&ACAAUUAUCUCAUAUCCAACG	2	0.621219958934334	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s460_TRINITY_DN8975_c1_g1_5268_TPlot.pdf
TRINITY_DN8975_c1_g1:775	si_s356	TRINITY_DN8975_c1_g1	765	784	775	-28.90	-20.30	0.70242214532872	8.5	4-11,781-774;13-21,773-765	1-3,784-782[UP5];12-12,x-x[BULq]	(((((((((-((((((((...&...)))))))).)))))))))	UUGGUUCAA-CUGUUUCUGCG&UAAAGAAAUAGAUUGAACCGA	4	0.324434270640594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s356_TRINITY_DN8975_c1_g1_775_TPlot.pdf
TRINITY_DN8976_c0_g1:2152	si_s181	TRINITY_DN8976_c0_g1	2141	2161	2152	-34.60	-22.50	0.65028901734104	13	4-15,2158-2147	1-3,2161-2159[UP5];16-21,2146-2141[UP3]	......((((((((((((...&...))))))))))))......	ACAACGCGUUGCUCGGGUGGA&GAUGCCCGAGUAACGAUUAUU	4	0.979364935656013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s181_TRINITY_DN8976_c0_g1_2152_TPlot.pdf
TRINITY_DN8976_c0_g1:2748	si_s612	TRINITY_DN8976_c0_g1	2735	2757	2748	-28.20	-19.80	0.702127659574468	6.5	1-6,2757-2752;8-13,2750-2745;14-21,2742-2735	7-7,2751-2751[SIL];x-x,2744-2743[BULt]	((((((((..((((((.((((((&)))))).))))))--))))))))	GUCGCUUGACGAUUUGCAGAAGA&UCUUUUUUAAAUC--CAAGCGAU	2	0.625905095268545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN8976_c0_g1_2748_TPlot.pdf
TRINITY_DN8977_c0_g1:1210	si_a147	TRINITY_DN8977_c0_g1	1198	1219	1210	-30.40	-19.80	0.651315789473684	8	1-6,1219-1214;8-14,1212-1206;17-19,1203-1201;20-21,1199-1198	7-7,1213-1213[SIL];15-16,1205-1204[SIL];x-x,1200-1200[BULt]	((.(((..(((((((.((((((&)))))).)))))))..)))-))	UGAACCGGAAAGCGAGGACGAU&AUCGUUGUUGUUUUAAGGU-CA	4	0.999999997365935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN8977_c0_g1_1210_TPlot.pdf
TRINITY_DN8977_c0_g1:1211	si_a146	TRINITY_DN8977_c0_g1	1200	1220	1211	-29.70	-19.40	0.653198653198653	9	2-7,1219-1214;9-15,1212-1206;18-20,1203-1201	1-1,1220-1220[UP5];8-8,1213-1213[SIL];16-17,1205-1204[SIL];21-21,1200-1200[UP3]	.(((..(((((((.((((((.&.)))))).)))))))..))).	AACCGGAAAGCGAGGACGAUC&AAUCGUUGUUGUUUUAAGGUC	2	0.999980412043275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN8977_c0_g1_1211_TPlot.pdf
TRINITY_DN897_c0_g1:1921	si_a85	TRINITY_DN897_c0_g1	1910	1930	1921	-25.00	-16.90	0.676	7	3-17,1928-1914	1-2,1930-1929[UP5];18-21,1913-1910[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGUACUUUUCUUAAUAAUGCC&UUCAUUAUUAAGAAAAGGUAA	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a85_TRINITY_DN897_c0_g1_1921_TPlot.pdf
TRINITY_DN897_c0_g1:1923	si_a83	TRINITY_DN897_c0_g1	1912	1932	1923	-24.50	-16.90	0.689795918367347	9	5-19,1928-1914	1-4,1932-1929[UP5];20-21,1913-1912[UP3]	..(((((((((((((((....&....)))))))))))))))..	UACUUUUCUUAAUAAUGCCGA&UUUUCAUUAUUAAGAAAAGGU	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN897_c0_g1_1923_TPlot.pdf
TRINITY_DN897_c0_g1:1924	si_a82	TRINITY_DN897_c0_g1	1913	1933	1924	-23.70	-16.90	0.713080168776371	10	6-20,1928-1914	1-5,1933-1929[UP5];21-21,1913-1913[UP3]	.(((((((((((((((.....&.....))))))))))))))).	ACUUUUCUUAAUAAUGCCGAU&UUUUUCAUUAUUAAGAAAAGG	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a82_TRINITY_DN897_c0_g1_1924_TPlot.pdf
TRINITY_DN8984_c0_g1:2379	si_s87	TRINITY_DN8984_c0_g1	2368	2386	2379	-32.90	-23.80	0.723404255319149	6.5	1-4,2386-2383;7-20,2382-2369	5-6,x-x[BULq];21-21,2368-2368[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	UAGUGAAGAGGAAGA--GGAA&UUCCUUUCUUCUUCUUCGCUU	4	0.999999577348245	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8984_c0_g1_2379_TPlot.pdf
TRINITY_DN8984_c0_g1:2496	si_s30	TRINITY_DN8984_c0_g1	2485	2506	2496	-24.80	-18.70	0.754032258064516	6	1-7,2506-2500;8-18,2498-2488	x-x,2499-2499[BULt];19-21,2487-2485[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	CGAUAAAGAUUUAGAUUGCGAU&AUUGCAA-CUAAAUCUUUAAUA	3	0.409237017923238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN8984_c0_g1_2496_TPlot.pdf
TRINITY_DN8984_c0_g1:283	si_s76	TRINITY_DN8984_c0_g1	272	292	283	-23.60	-16.70	0.707627118644068	9	1-15,292-278	16-21,277-272[UP3]	......(((((((((((((((&)))))))))))))))......	CUUUAUGGAGAGAAAAAGAGU&AUUUUUUUUCUUUCCUUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8984_c0_g1_283_TPlot.pdf
TRINITY_DN8984_c0_g1:285	si_s74	TRINITY_DN8984_c0_g1	274	294	285	-25.00	-16.70	0.668	9.5	3-17,292-278	1-2,294-293[UP5];18-21,277-274[UP3]	....(((((((((((((((..&..)))))))))))))))....	UUAUGGAGAGAAAAAGAGUCU&CUAUUUUUUUUCUUUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8984_c0_g1_285_TPlot.pdf
TRINITY_DN8984_c0_g1:286	si_s73	TRINITY_DN8984_c0_g1	275	299	286	-24.00	-16.90	0.704166666666667	13.5	1-3,299-297;4-18,292-278	x-x,296-293[BULt];19-21,277-275[UP3]	...(((((((((((((((....(((&)))----)))))))))))))))...	UAUGGAGAGAAAAAGAGUCUAAAGA&UCU----AUUUUUUUUCUUUCCUUU	2	0.999999999997941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8984_c0_g1_286_TPlot.pdf
TRINITY_DN8984_c0_g1:287	si_s72	TRINITY_DN8984_c0_g1	276	300	287	-24.10	-17.80	0.738589211618257	12.5	1-4,300-297;5-19,292-278	x-x,296-293[BULt];20-21,277-276[UP3]	..(((((((((((((((....((((&))))----)))))))))))))))..	AUGGAGAGAAAAAGAGUCUAAAGAA&UUCU----AUUUUUUUUCUUUCCUU	2	0.999997941120329	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8984_c0_g1_287_TPlot.pdf
TRINITY_DN8984_c0_g1:289	si_s70	TRINITY_DN8984_c0_g1	278	302	289	-25.80	-20.30	0.786821705426357	11.5	2-6,301-297;7-21,292-278	1-1,302-302[UP5];x-x,296-293[BULt]	(((((((((((((((....(((((.&.)))))----)))))))))))))))	GGAGAGAAAAAGAGUCUAAAGAAGA&ACUUCU----AUUUUUUUUCUUUCC	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8984_c0_g1_289_TPlot.pdf
TRINITY_DN8989_c0_g1:724	si_a344	TRINITY_DN8989_c0_g1	712	733	724	-28.50	-18.70	0.656140350877193	6	1-2,733-732;4-10,730-724;11-20,722-713	3-3,731-731[SIL];x-x,723-723[BULt];21-21,712-712[UP3]	.((((((((((.(((((((.((&)).)))))))-)))))))))).	CAGAAUUAAUGUUUUUCGGAAC&GUCCCGAAAA-UAUUAAUUCUA	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a344_TRINITY_DN8989_c0_g1_724_TPlot.pdf
TRINITY_DN898_c0_g1:1091	si_a406	TRINITY_DN898_c0_g1	1080	1100	1091	-19.80	-13.20	0.666666666666667	10	2-14,1099-1087	1-1,1100-1100[UP5];15-21,1086-1080[UP3]	.......(((((((((((((.&.))))))))))))).......	AGACAAAAUAGACAAAGCAAG&AUUGUUUUGUUUAUAUUUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN898_c0_g1_1091_TPlot.pdf
TRINITY_DN898_c0_g1:1092	si_a405	TRINITY_DN898_c0_g1	1081	1101	1092	-19.80	-13.20	0.666666666666667	11	3-15,1099-1087	1-2,1101-1100[UP5];16-21,1086-1081[UP3]	......(((((((((((((..&..)))))))))))))......	GACAAAAUAGACAAAGCAAGU&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN898_c0_g1_1092_TPlot.pdf
TRINITY_DN898_c0_g1:1143	si_s39	TRINITY_DN898_c0_g1	1132	1153	1143	-22.30	-14.82	0.66457399103139	10.5	2-8,1152-1146;12-21,1141-1132	1-1,1153-1153[UP5];9-11,1145-1142[AILt]	((((((((((....(((((((.&.)))))))-...))))))))))	GAGUCCGAUUUAAAAAAGAUUG&AAAUCUUU-AAUAAUUGGAUUU	3	0.999992952957843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN898_c0_g1_1143_TPlot.pdf
TRINITY_DN898_c0_g1:233	si_a545	TRINITY_DN898_c0_g1	222	242	233	-28.10	-18.60	0.661921708185053	8	2-15,241-228	1-1,242-242[UP5];16-21,227-222[UP3]	......((((((((((((((.&.))))))))))))))......	AUCUGUAAAUAGAUUGAGCCC&CGGUUCAAUCUAUUUCUUUAU	4	0.999913120515951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN898_c0_g1_233_TPlot.pdf
TRINITY_DN898_c0_g1:400	si_a153	TRINITY_DN898_c0_g1	389	410	400	-28.70	-19.00	0.662020905923345	11.5	1-8,410-403;11-19,399-391	9-10,402-400[AILt];20-21,390-389[UP3]	..(((((((((...((((((((&))))))))-..)))))))))..	AAAGAUUGGCUAACGAAGCAAC&GUUGUUUU-AAGGUCAAUCUAU	2	0.980896339800985	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a153_TRINITY_DN898_c0_g1_400_TPlot.pdf
TRINITY_DN898_c0_g1:401	si_a152	TRINITY_DN898_c0_g1	390	411	401	-29.20	-19.80	0.678082191780822	10.5	1-9,411-403;12-20,399-391	10-11,402-400[AILt];21-21,390-390[UP3]	.(((((((((...(((((((((&)))))))))-..))))))))).	AAGAUUGGCUAACGAAGCAACA&UGUUGUUUU-AAGGUCAAUCUA	3	0.970472458013049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a152_TRINITY_DN898_c0_g1_401_TPlot.pdf
TRINITY_DN898_c0_g1:403	si_a151	TRINITY_DN898_c0_g1	391	412	403	-28.90	-19.60	0.678200692041523	10	2-10,411-403;13-21,399-391	1-1,412-412[UP5];11-12,402-400[AILt]	(((((((((...(((((((((.&.)))))))))-..)))))))))	AGAUUGGCUAACGAAGCAACAC&UUGUUGUUUU-AAGGUCAAUCU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN898_c0_g1_403_TPlot.pdf
TRINITY_DN898_c0_g1:638	si_a350	TRINITY_DN898_c0_g1	627	647	638	-20.30	-13.70	0.67487684729064	6	3-12,645-636;14-21,634-627	1-2,647-646[UP5];13-13,635-635[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	UCAAAGUGAAAUUGAUAUUGA&AAAAUAUUAAUUCUAUUUUGA	3	0.999823841900373	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN898_c0_g1_638_TPlot.pdf
TRINITY_DN8990_c1_g1:1209	si_a329	TRINITY_DN8990_c1_g1	1197	1218	1209	-29.60	-20.30	0.685810810810811	8	2-12,1217-1207;13-19,1205-1199	1-1,1218-1218[UP5];x-x,1206-1206[BULt];20-21,1198-1197[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	AUGGACAAGAGAGUAAAAGGAA&AUUUUUUUAUUC-CUUGUCCCG	2	0.997754019103068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a329_TRINITY_DN8990_c1_g1_1209_TPlot.pdf
TRINITY_DN8990_c1_g1:1357	si_s898	TRINITY_DN8990_c1_g1	1346	1369	1357	-30.70	-22.00	0.716612377850163	11.5	1-5,1369-1365;6-18,1361-1349	x-x,1364-1362[BULt];19-21,1348-1346[UP3]	...(((((((((((((...(((((&)))))---)))))))))))))...	AAAGAAAUUGAGGAGAGAAAGGCU&GGCUU---UCUCUUCAAUUUCAAU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s898_TRINITY_DN8990_c1_g1_1357_TPlot.pdf
TRINITY_DN8990_c1_g1:1358	si_s897	TRINITY_DN8990_c1_g1	1347	1370	1358	-31.30	-22.20	0.70926517571885	12	2-6,1369-1365;7-19,1361-1349	1-1,1370-1370[UP5];x-x,1364-1362[BULt];20-21,1348-1347[UP3]	..(((((((((((((...(((((.&.)))))---)))))))))))))..	AAGAAAUUGAGGAGAGAAAGGCUA&AGGCUU---UCUCUUCAAUUUCAA	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN8990_c1_g1_1358_TPlot.pdf
TRINITY_DN8990_c1_g1:1359	si_s79	TRINITY_DN8990_c1_g1	1347	1368	1359	-26.20	-17.30	0.66030534351145	7.5	2-14,1367-1355;17-21,1351-1347	1-1,1368-1368[UP5];15-16,1354-1352[AILt]	(((((...(((((((((((((.&.)))))))))))))-..)))))	AAGAAAUUGAGGAGAGAAAGGC&UUUUUUCUUUCCUU-UCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8990_c1_g1_1359_TPlot.pdf
TRINITY_DN8990_c1_g1:1361	si_s896	TRINITY_DN8990_c1_g1	1348	1370	1361	-31.60	-23.20	0.734177215189873	7	1-3,1370-1368;5-12,1366-1359;13-20,1356-1349	4-4,1367-1367[SIL];x-x,1358-1357[BULt];21-21,1348-1348[UP3]	.((((((((..((((((((.(((&))).))))))))--)))))))).	AGAAAUUGAGGAGAGAAAGGCUA&UAGGCUUUCUCU--UCAAUUUCA	4	0.880705849157327	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN8990_c1_g1_1361_TPlot.pdf
TRINITY_DN8990_c1_g1:1362	si_s895	TRINITY_DN8990_c1_g1	1349	1371	1362	-31.10	-22.70	0.729903536977492	5	2-4,1370-1368;6-13,1366-1359;14-21,1356-1349	1-1,1371-1371[UP5];5-5,1367-1367[SIL];x-x,1358-1357[BULt]	((((((((..((((((((.(((.&.))).))))))))--))))))))	GAAAUUGAGGAGAGAAAGGCUAG&AUAGGCUUUCUCU--UCAAUUUC	2	0.700989454440092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN8990_c1_g1_1362_TPlot.pdf
TRINITY_DN899_c0_g1:963	si_s76	TRINITY_DN899_c0_g1	952	972	963	-23.60	-16.10	0.682203389830509	17	9-20,964-953	1-8,972-965[UP5];21-21,952-952[UP3]	.((((((((((((........&........)))))))))))).	UGGAAAGGGAAGAUUUCAACG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN899_c0_g1_963_TPlot.pdf
TRINITY_DN8_c0_g1:467	si_s75	TRINITY_DN8_c0_g1	456	476	467	-24.00	-16.70	0.695833333333333	8.5	3-18,474-459	1-2,476-475[UP5];19-21,458-456[UP3]	...((((((((((((((((..&..))))))))))))))))...	GUUAAGGGAAGAAAAAGGAAA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8_c0_g1_467_TPlot.pdf
TRINITY_DN8_c1_g1:1063	si_a551	TRINITY_DN8_c1_g1	1052	1076	1063	-31.60	-20.98	0.663924050632911	13	3-9,1074-1068;11-21,1062-1052	1-2,1076-1075[UP5];10-10,1067-1063[AILt]	(((((((((((.....(((((((..&..)))))))----.)))))))))))	GGGGAGAUAAACUACCAAAUAGACA&AAUCUAUUU----CUUUAUCUCCCC	2	0.995377114934657	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN8_c1_g1_1063_TPlot.pdf
TRINITY_DN8_c1_g1:1087	si_s79	TRINITY_DN8_c1_g1	1076	1097	1087	-26.20	-18.20	0.694656488549618	7.5	1-5,1097-1093;6-18,1091-1079	x-x,1092-1092[BULt];19-21,1078-1076[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	AUCAGGAAAGGAGAGACAAAGA&UUUUU-UCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8_c1_g1_1087_TPlot.pdf
TRINITY_DN8_c1_g1:1088	si_s78	TRINITY_DN8_c1_g1	1077	1097	1088	-26.20	-19.20	0.732824427480916	6.5	1-5,1097-1093;7-19,1091-1079	6-6,1092-1092[SIL];20-21,1078-1077[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	UCAGGAAAGGAGAGACAAAGA&UUUUUUUCUUUCCUUUCUUCU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8_c1_g1_1088_TPlot.pdf
TRINITY_DN8_c1_g1:1089	si_s77	TRINITY_DN8_c1_g1	1078	1099	1089	-25.50	-20.10	0.788235294117647	6.5	1-7,1099-1093;8-20,1091-1079	x-x,1092-1092[BULt];21-21,1078-1078[UP3]	.(((((((((((((.(((((((&)))))))-))))))))))))).	CAGGAAAGGAGAGACAAAGAGA&UUUUUUU-UCUUUCCUUUCUUC	2	0.999874865257008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN8_c1_g1_1089_TPlot.pdf
TRINITY_DN8_c1_g1:1090	si_s76	TRINITY_DN8_c1_g1	1079	1100	1090	-23.60	-20.10	0.851694915254237	6.5	2-8,1099-1093;9-21,1091-1079	1-1,1100-1100[UP5];x-x,1092-1092[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	AGGAAAGGAGAGACAAAGAGAA&AUUUUUUU-UCUUUCCUUUCUU	3	0.996814852057168	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8_c1_g1_1090_TPlot.pdf
TRINITY_DN8_c1_g1:1092	si_s74	TRINITY_DN8_c1_g1	1081	1101	1092	-25.00	-18.40	0.736	6.5	1-2,1101-1100;4-9,1098-1093;11-21,1091-1081	3-3,1099-1099[SIL];10-10,1092-1092[SIL]	(((((((((((.((((((.((&)).)))))).)))))))))))	GAAAGGAGAGACAAAGAGAAG&CUAUUUUUUUUCUUUCCUUUC	3	0.999999985027286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8_c1_g1_1092_TPlot.pdf
TRINITY_DN8_c1_g1:1095	si_a67	TRINITY_DN8_c1_g1	1086	1102	1095	-27.20	-17.90	0.658088235294118	10	1-8,1102-1095;13-21,1094-1086	9-12,x-x[BULq]	(((((((((----((((((((&))))))))....)))))))))	GAGAGACAA----AGAGAAGC&GCUUCUUUCAAAUUGUUUUUC	2	0.99999997753485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN8_c1_g1_1095_TPlot.pdf
TRINITY_DN8_c1_g1:1421	si_s814	TRINITY_DN8_c1_g1	1410	1430	1421	-26.60	-17.30	0.650375939849624	7	1-3,1430-1428;5-18,1426-1413	4-4,1427-1427[SIL];19-21,1412-1410[UP3]	...((((((((((((((.(((&))).))))))))))))))...	AGUUUAUUAAGGAAGGGAAAC&GUUACCUUUUCUUAAUAAUGA	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN8_c1_g1_1421_TPlot.pdf
TRINITY_DN8_c1_g1:1433	si_s72	TRINITY_DN8_c1_g1	1418	1442	1433	-24.10	-15.90	0.659751037344398	15	3-10,1440-1433;11-21,1428-1418	1-2,1442-1441[UP5];x-x,1432-1429[BULt]	(((((((((((....((((((((..&..))))))))----)))))))))))	AAGGAAGGGAAACUCAAGAGUGGUA&UUCUAUUUUU----UUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN8_c1_g1_1433_TPlot.pdf
TRINITY_DN8_c1_g1:1538	si_s312	TRINITY_DN8_c1_g1	1527	1547	1538	-29.00	-19.30	0.66551724137931	10.5	5-14,1543-1534;16-21,1532-1527	1-4,1547-1544[UP5];15-15,1533-1533[SIL]	((((((.((((((((((....&....)))))))))).))))))	UGACAAAGGGGGCAGAAACAG&AAAAUUCUGUCCUUCUUGUUA	3	0.999999999967537	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN8_c1_g1_1538_TPlot.pdf
TRINITY_DN8_c1_g1:1616	si_s78	TRINITY_DN8_c1_g1	1606	1625	1616	-26.20	-17.40	0.66412213740458	11.5	6-15,1620-1611;17-21,1610-1606	1-5,1625-1621[UP5];16-16,x-x[BULq]	(((((-((((((((((.....&.....)))))))))).)))))	AGAAG-GAGGAAAGGAUAUAU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8_c1_g1_1616_TPlot.pdf
TRINITY_DN8_c1_g1:1747	si_s87	TRINITY_DN8_c1_g1	1730	1756	1747	-32.90	-23.10	0.702127659574468	9.5	1-13,1756-1744;14-14,1742-1742;15-21,1736-1730	x-x,1743-1743[BULt];x-x,1741-1737[BULt]	(((((((.....(.(((((((((((((&)))))))))))))-)-----)))))))	AGGCGAAAUACUGUAGGAGGAGAGGAA&UUCCUUUCUUCUU-C-----UUCGCUU	4	0.999999999935886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8_c1_g1_1747_TPlot.pdf
TRINITY_DN8_c1_g1:1749	si_s85	TRINITY_DN8_c1_g1	1732	1758	1749	-33.80	-22.00	0.650887573964497	10.5	2-15,1757-1744;16-16,1742-1742;17-21,1736-1732	1-1,1758-1758[UP5];x-x,1743-1743[BULt];x-x,1741-1737[BULt]	(((((.....(.((((((((((((((.&.))))))))))))))-)-----)))))	GCGAAAUACUGUAGGAGGAGAGGAAGA&CUUUCCUUUCUUCUU-C-----UUCGC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN8_c1_g1_1749_TPlot.pdf
TRINITY_DN8_c1_g1:1755	si_s74	TRINITY_DN8_c1_g1	1744	1764	1755	-25.00	-16.40	0.656	13.5	6-20,1759-1745	1-5,1764-1760[UP5];21-21,1744-1744[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGGAGGAGAGGAAGAACUUGA&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN8_c1_g1_1755_TPlot.pdf
TRINITY_DN8_c1_g1:1756	si_s73	TRINITY_DN8_c1_g1	1745	1765	1756	-24.00	-16.20	0.675	14.5	7-21,1759-1745	1-6,1765-1760[UP5]	(((((((((((((((......&......)))))))))))))))	GGAGGAGAGGAAGAACUUGAU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN8_c1_g1_1756_TPlot.pdf
TRINITY_DN8_c1_g1:3438	si_a315	TRINITY_DN8_c1_g1	3427	3447	3438	-27.00	-17.80	0.659259259259259	6.5	1-3,3447-3445;5-8,3443-3440;10-21,3438-3427	4-4,3444-3444[SIL];9-9,3439-3439[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	GAAGAAUUAUGGUUAGAACCA&UGGAUUUAUCCAUGAUUUUUU	4	0.99999964900663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN8_c1_g1_3438_TPlot.pdf
TRINITY_DN8_c1_g1:4249	si_a789	TRINITY_DN8_c1_g1	4240	4258	4249	-24.80	-17.10	0.689516129032258	5.5	1-13,4258-4246;16-18,4245-4243	14-15,x-x[BULq];19-21,4242-4240[UP3]	...(((--(((((((((((((&)))))))))))))..)))...	UUCGGA--GUAGAAAAAUAGA&UCUAUUUUUCUAUUUUCCAAU	3	0.999999819410879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN8_c1_g1_4249_TPlot.pdf
TRINITY_DN8_c1_g1:4251	si_a787	TRINITY_DN8_c1_g1	4242	4260	4251	-26.30	-17.30	0.657794676806084	6.5	3-15,4258-4246;18-20,4245-4243	1-2,4260-4259[UP5];16-17,x-x[BULq];21-21,4242-4242[UP3]	.(((--(((((((((((((..&..)))))))))))))..))).	CGGA--GUAGAAAAAUAGAUC&CUUCUAUUUUUCUAUUUUCCA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN8_c1_g1_4251_TPlot.pdf
TRINITY_DN8_c1_g1:4254	si_a784	TRINITY_DN8_c1_g1	4243	4263	4254	-24.70	-16.40	0.663967611336032	10.5	6-21,4258-4243	1-5,4263-4259[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGUAGAAAAAUAGAUCCUC&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN8_c1_g1_4254_TPlot.pdf
TRINITY_DN8_c1_g1:443	si_a336	TRINITY_DN8_c1_g1	432	452	443	-31.20	-20.80	0.666666666666667	12	3-14,450-439	1-2,452-451[UP5];15-21,438-432[UP3]	.......((((((((((((..&..)))))))))))).......	UGCUUACCGGGAUAGGGAAAA&UAUUCCUUGUCCCGAAAAUAU	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN8_c1_g1_443_TPlot.pdf
TRINITY_DN8_c1_g1:449	si_a330	TRINITY_DN8_c1_g1	438	458	449	-30.50	-20.80	0.681967213114754	17	9-20,450-439	1-8,458-451[UP5];21-21,438-438[UP3]	.((((((((((((........&........)))))))))))).	CCGGGAUAGGGAAAACGAAGG&UUUUUUUAUUCCUUGUCCCGA	3	0.999880089152999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN8_c1_g1_449_TPlot.pdf
TRINITY_DN8_c1_g1:4680	si_s897	TRINITY_DN8_c1_g1	4665	4689	4680	-31.30	-21.00	0.670926517571885	11	1-11,4689-4679;12-13,4674-4673;15-20,4671-4666	x-x,4678-4675[BULt];14-14,4672-4672[SIL];21-21,4665-4665[UP3]	.((((((.((....(((((((((((&)))))))))))----)).)))))).	AUGAAAUAGAAAGCAGGGAAAGCCU&AGGCUUUCUCU----UCAAUUUCAA	3	0.999992952957843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN8_c1_g1_4680_TPlot.pdf
TRINITY_DN8_c1_g1:4681	si_s896	TRINITY_DN8_c1_g1	4666	4690	4681	-31.60	-20.80	0.658227848101266	11	2-12,4689-4679;13-14,4674-4673;16-21,4671-4666	1-1,4690-4690[UP5];x-x,4678-4675[BULt];15-15,4672-4672[SIL]	((((((.((....(((((((((((.&.)))))))))))----)).))))))	UGAAAUAGAAAGCAGGGAAAGCCUC&UAGGCUUUCUCU----UCAAUUUCA	3	0.999998325869642	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN8_c1_g1_4681_TPlot.pdf
TRINITY_DN8_c1_g1:4687	si_a183	TRINITY_DN8_c1_g1	4676	4699	4687	-30.10	-19.98	0.663787375415282	14.5	1-6,4699-4694;11-21,4686-4676	7-10,4693-4687[AILt]	(((((((((((.......((((((&))))))---....)))))))))))	AGCAGGGAAAGCCUCAAAUAUCUA&UAGAUA---AUAUCUUUCCCUGUU	2	0.957099665449566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN8_c1_g1_4687_TPlot.pdf
TRINITY_DN8_c1_g1:4688	si_a182	TRINITY_DN8_c1_g1	4677	4700	4688	-31.80	-22.38	0.70377358490566	14.5	1-7,4700-4694;12-21,4686-4677	8-11,4693-4687[AILt]	((((((((((.......(((((((&)))))))---....))))))))))	GCAGGGAAAGCCUCAAAUAUCUAG&CUAGAUA---AUAUCUUUCCCUGU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a182_TRINITY_DN8_c1_g1_4688_TPlot.pdf
TRINITY_DN8_c1_g1:4689	si_a181	TRINITY_DN8_c1_g1	4678	4701	4689	-32.00	-21.08	0.65875	15	2-8,4700-4694;13-21,4686-4678	1-1,4701-4701[UP5];9-12,4693-4687[AILt]	(((((((((.......(((((((.&.)))))))---....)))))))))	CAGGGAAAGCCUCAAAUAUCUAGG&UCUAGAUA---AUAUCUUUCCCUG	3	0.904467414761967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN8_c1_g1_4689_TPlot.pdf
TRINITY_DN8_c1_g1:4719	si_a406	TRINITY_DN8_c1_g1	4708	4728	4719	-19.80	-13.40	0.676767676767677	5.5	1-6,4728-4723;8-12,4721-4717;14-20,4715-4709	7-7,4722-4722[SIL];13-13,4716-4716[SIL];21-21,4708-4708[UP3]	.(((((((.(((((.((((((&)))))).))))).))))))).	CUUAGAUAGAAACAUGACAAU&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN8_c1_g1_4719_TPlot.pdf
TRINITY_DN8_c1_g1:5048	si_s82	TRINITY_DN8_c1_g1	5033	5057	5048	-28.90	-19.10	0.660899653979239	12	3-13,5055-5045;14-20,5040-5034	1-2,5057-5056[UP5];x-x,5044-5041[BULt];21-21,5033-5033[UP3]	.(((((((....(((((((((((..&..)))))))))))----))))))).	CAGAGGGAAAAUGAGAGGGAAGGCA&UUUCUUUCCUUUC----UUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN8_c1_g1_5048_TPlot.pdf
TRINITY_DN8_c1_g1:5055	si_s75	TRINITY_DN8_c1_g1	5044	5071	5055	-24.00	-16.00	0.666666666666667	19	1-9,5071-5063;10-20,5055-5045	x-x,5062-5056[BULt];21-21,5044-5044[UP3]	.(((((((((((.......(((((((((&)))))))))-------))))))))))).	UGAGAGGGAAGGCAUAACAAAAAAGGUA&UAUUUUUUU-------UCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8_c1_g1_5055_TPlot.pdf
TRINITY_DN8_c1_g1:5352	si_s69	TRINITY_DN8_c1_g1	5341	5359	5352	-23.40	-15.40	0.658119658119658	7	1-7,5359-5353;10-20,5352-5342	8-9,x-x[BULq];21-21,5341-5341[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	CGAAGAAAGAGA--AGAAGUU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN8_c1_g1_5352_TPlot.pdf
TRINITY_DN8_c1_g1:5353	si_s68	TRINITY_DN8_c1_g1	5342	5360	5353	-23.10	-15.40	0.666666666666667	7	2-8,5359-5353;11-21,5352-5342	1-1,5360-5360[UP5];9-10,x-x[BULq]	(((((((((((--(((((((.&.)))))))..)))))))))))	GAAGAAAGAGA--AGAAGUUA&CAACUUCUAUUUUUUUUCUUU	2	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN8_c1_g1_5353_TPlot.pdf
TRINITY_DN8_c1_g1:5483	si_s70	TRINITY_DN8_c1_g1	5472	5491	5483	-25.80	-18.30	0.709302325581395	7	1-6,5491-5486;8-11,5485-5482;13-21,5480-5472	7-7,x-x[BULq];12-12,5481-5481[SIL]	(((((((((.((((-((((((&)))))).)))).)))))))))	GGAAAGAAAUGGAA-AGAGGU&ACUUCUAUUUUUUUUCUUUCC	4	0.999999999885721	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN8_c1_g1_5483_TPlot.pdf
TRINITY_DN8_c1_g1:740	si_s76	TRINITY_DN8_c1_g1	729	749	740	-23.60	-15.50	0.656779661016949	18.5	9-19,741-731	1-8,749-742[UP5];20-21,730-729[UP3]	..(((((((((((........&........)))))))))))..	UCGGAAGGAGAGAUUCACUUA&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8_c1_g1_740_TPlot.pdf
TRINITY_DN8_c1_g1:808	si_a68	TRINITY_DN8_c1_g1	797	820	808	-25.40	-17.00	0.669291338582677	15.5	1-8,820-813;12-20,806-798	9-11,812-807[AILt];21-21,797-797[UP3]	.(((((((((......((((((((&))))))))---...))))))))).	AGAGGGACAAAAAGAGGAAGGAAG&CUUCUUUC---AAAUUGUUUUUCA	2	0.999999835427854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN8_c1_g1_808_TPlot.pdf
TRINITY_DN8_c1_g1:813	si_s88	TRINITY_DN8_c1_g1	797	822	813	-34.80	-23.50	0.675287356321839	9.5	1-14,822-809;15-16,803-802;18-20,800-798	x-x,808-804[BULt];17-17,801-801[SIL];21-21,797-797[UP3]	.(((.((.....((((((((((((((&))))))))))))))-----)).))).	AGAGGGACAAAAAGAGGAAGGAAGGA&UCCUUUCUUCUUCU-----UCGCUUC	2	0.999999965700379	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN8_c1_g1_813_TPlot.pdf
TRINITY_DN8_c1_g1:814	si_s87	TRINITY_DN8_c1_g1	798	823	814	-32.90	-24.20	0.735562310030395	8.5	1-15,823-809;16-17,803-802;19-21,800-798	x-x,808-804[BULt];18-18,801-801[SIL]	(((.((.....(((((((((((((((&)))))))))))))))-----)).)))	GAGGGACAAAAAGAGGAAGGAAGGAA&UUCCUUUCUUCUUCU-----UCGCUU	3	0.999988774176646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN8_c1_g1_814_TPlot.pdf
TRINITY_DN8_c1_g1:817	si_s84	TRINITY_DN8_c1_g1	806	826	817	-32.30	-23.10	0.715170278637771	6.5	3-19,824-808	1-2,826-825[UP5];20-21,807-806[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAAAGAGGAAGGAAGGAAACG&UCUUUCCUUUCUUCUUCUUCG	3	0.99999997930005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN8_c1_g1_817_TPlot.pdf
TRINITY_DN8_c1_g1:818	si_s83	TRINITY_DN8_c1_g1	807	827	818	-30.90	-23.10	0.747572815533981	7.5	4-20,824-808	1-3,827-825[UP5];21-21,807-807[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGAGGAAGGAAGGAAACGC&UUCUUUCCUUUCUUCUUCUUC	4	0.999999230933856	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN8_c1_g1_818_TPlot.pdf
TRINITY_DN8_c1_g1:819	si_s82	TRINITY_DN8_c1_g1	808	828	819	-28.90	-23.10	0.799307958477509	8.5	5-21,824-808	1-4,828-825[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAGAGGAAGGAAGGAAACGCC&UUUCUUUCCUUUCUUCUUCUU	3	0.999316162322268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN8_c1_g1_819_TPlot.pdf
TRINITY_DN8_c1_g1:851	si_s79	TRINITY_DN8_c1_g1	840	860	851	-26.20	-18.20	0.694656488549618	11	5-18,856-843	1-4,860-857[UP5];19-21,842-840[UP3]	...((((((((((((((....&....))))))))))))))...	AAAAAGAAAGGAAGGAACUCC&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN8_c1_g1_851_TPlot.pdf
TRINITY_DN8_c1_g1:852	si_s78	TRINITY_DN8_c1_g1	841	861	852	-26.20	-18.20	0.694656488549618	12	6-19,856-843	1-5,861-857[UP5];20-21,842-841[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAAAGAAAGGAAGGAACUCCU&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN8_c1_g1_852_TPlot.pdf
TRINITY_DN8_c1_g1:854	si_s76	TRINITY_DN8_c1_g1	843	863	854	-23.60	-18.20	0.771186440677966	14	8-21,856-843	1-7,863-857[UP5]	((((((((((((((.......&.......))))))))))))))	AAGAAAGGAAGGAACUCCUAG&AUUUUUUUUCUUUCCUUUCUU	4	0.999999999997439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN8_c1_g1_854_TPlot.pdf
TRINITY_DN8_c1_g1:855	si_s75	TRINITY_DN8_c1_g1	844	864	855	-24.00	-17.30	0.720833333333333	16	9-21,856-844	1-8,864-857[UP5]	(((((((((((((........&........)))))))))))))	AGAAAGGAAGGAACUCCUAGA&UAUUUUUUUUCUUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8_c1_g1_855_TPlot.pdf
TRINITY_DN8_c1_g1:916	si_a66	TRINITY_DN8_c1_g1	903	925	916	-26.70	-17.80	0.666666666666667	10.5	2-11,924-915;12-17,912-907	1-1,925-925[UP5];x-x,914-913[BULt];18-21,906-903[UP3]	....((((((..((((((((((.&.))))))))))--))))))....	UUGUGCAAUUAAUGGAAGAAGCA&CGCUUCUUUCA--AAUUGUUUUU	2	0.999999943571167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN8_c1_g1_916_TPlot.pdf
TRINITY_DN8_c1_g2:2073	si_a407	TRINITY_DN8_c1_g2	2062	2082	2073	-19.80	-12.90	0.651515151515151	11.5	5-19,2078-2064	1-4,2082-2079[UP5];20-21,2063-2062[UP3]	..(((((((((((((((....&....)))))))))))))))..	CAUUAAAUGUGGACAAAUGGG&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN8_c1_g2_2073_TPlot.pdf
TRINITY_DN8_c1_g2:2226	si_a193	TRINITY_DN8_c1_g2	2216	2235	2226	-30.90	-20.60	0.666666666666667	8	1-12,2235-2224;14-16,2223-2221	13-13,x-x[BULq];17-21,2220-2216[UP3]	.....(((-((((((((((((&)))))))))))).))).....	ACCAGUAG-GAAUAGGGAAGG&CUUUCCCUGUUCACUAAUAAA	4	0.998853101299611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN8_c1_g2_2226_TPlot.pdf
TRINITY_DN8_c1_g2:2231	si_a188	TRINITY_DN8_c1_g2	2221	2240	2231	-32.00	-22.00	0.6875	9.5	5-17,2236-2224;19-21,2223-2221	1-4,2240-2237[UP5];18-18,x-x[BULq]	(((-(((((((((((((....&....))))))))))))).)))	UAG-GAAUAGGGAAGGAGGAA&AAUAUCUUUCCCUGUUCACUA	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a188_TRINITY_DN8_c1_g2_2231_TPlot.pdf
TRINITY_DN8_c1_g2:2235	si_s75	TRINITY_DN8_c1_g2	2223	2244	2235	-24.00	-17.70	0.7375	9	3-17,2242-2228;18-21,2226-2223	1-2,2244-2243[UP5];x-x,2227-2227[BULt]	((((.(((((((((((((((..&..)))))))))))))))-))))	GGAAUAGGGAAGGAGGAAGACG&UAUUUUUUUUCUUUCCU-UUCU	4	0.999999999999891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN8_c1_g2_2235_TPlot.pdf
TRINITY_DN8_c1_g2:2338	si_a631	TRINITY_DN8_c1_g2	2327	2349	2338	-25.70	-16.90	0.657587548638132	8	2-9,2348-2341;10-19,2338-2329	1-1,2349-2349[UP5];x-x,2340-2339[BULt];20-21,2328-2327[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	UCCAGAGAAAUCUUGACAUAAUC&UAUUAUGUC--GAUUUUUUUGAG	3	0.999999936974234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a631_TRINITY_DN8_c1_g2_2338_TPlot.pdf
TRINITY_DN8_c1_g2:2342	si_a629	TRINITY_DN8_c1_g2	2329	2350	2342	-26.30	-17.80	0.67680608365019	7	1-2,2350-2349;4-11,2348-2341;12-21,2338-2329	3-3,x-x[BULq];x-x,2340-2339[BULt]	((((((((((..((((((((-((&)).))))))))--))))))))))	CAGAGAAAUCUUGACAUAAU-CG&CGUAUUAUGUC--GAUUUUUUUG	3	0.999756459400394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN8_c1_g2_2342_TPlot.pdf
TRINITY_DN8_c1_g2:3166	si_s88	TRINITY_DN8_c1_g2	3151	3176	3166	-34.80	-23.00	0.660919540229885	8.5	1-2,3176-3175;3-14,3173-3162;15-19,3157-3153	x-x,3174-3174[BULt];x-x,3161-3158[BULt];20-21,3152-3151[UP3]	..(((((....((((((((((((.((&))-))))))))))))----)))))..	AUAGCGAUGGAGGAAGAAGAAAGAGA&UC-CUUUCUUCUUCU----UCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN8_c1_g2_3166_TPlot.pdf
TRINITY_DN8_c1_g3:245	si_s807	TRINITY_DN8_c1_g3	234	254	245	-28.90	-19.40	0.671280276816609	9	1-13,254-242	14-21,241-234[UP3]	........(((((((((((((&)))))))))))))........	UAUACUGUGGUAACGAGGAUA&UAUCUUCGUUACCUUUUCUUA	2	0.999990364208556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN8_c1_g3_245_TPlot.pdf
TRINITY_DN8_c1_g3:249	si_s803	TRINITY_DN8_c1_g3	238	258	249	-26.00	-19.60	0.753846153846154	9	1-3,258-256;5-17,254-242	4-4,255-255[SIL];18-21,241-238[UP3]	....(((((((((((((.(((&))).)))))))))))))....	CUGUGGUAACGAGGAUACGGU&AUUUUAUCUUCGUUACCUUUU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN8_c1_g3_249_TPlot.pdf
TRINITY_DN8_c1_g3:250	si_s802	TRINITY_DN8_c1_g3	239	259	250	-26.40	-20.40	0.772727272727273	8.5	1-4,259-256;6-18,254-242	5-5,255-255[SIL];19-21,241-239[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UGUGGUAACGAGGAUACGGUG&UAUUUUAUCUUCGUUACCUUU	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN8_c1_g3_250_TPlot.pdf
TRINITY_DN8_c1_g3:251	si_s801	TRINITY_DN8_c1_g3	240	260	251	-28.20	-20.60	0.730496453900709	9	2-5,259-256;7-19,254-242	1-1,260-260[UP5];6-6,255-255[SIL];20-21,241-240[UP3]	..(((((((((((((.((((.&.)))).)))))))))))))..	GUGGUAACGAGGAUACGGUGG&GUAUUUUAUCUUCGUUACCUU	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s801_TRINITY_DN8_c1_g3_251_TPlot.pdf
TRINITY_DN8_c1_g3:252	si_s800	TRINITY_DN8_c1_g3	241	261	252	-29.70	-20.60	0.693602693602694	10	3-6,259-256;8-20,254-242	1-2,261-260[UP5];7-7,255-255[SIL];21-21,241-241[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UGGUAACGAGGAUACGGUGGA&CGUAUUUUAUCUUCGUUACCU	2	0.918052453677541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s800_TRINITY_DN8_c1_g3_252_TPlot.pdf
TRINITY_DN8_c1_g3:253	si_s799	TRINITY_DN8_c1_g3	242	261	253	-30.00	-20.90	0.696666666666667	7.5	1-2,261-260;4-7,259-256;9-21,254-242	3-3,x-x[BULq];8-8,255-255[SIL]	(((((((((((((.((((-((&)).)))).)))))))))))))	GGUAACGAGGAUACGGUG-GA&UCGUAUUUUAUCUUCGUUACC	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s799_TRINITY_DN8_c1_g3_253_TPlot.pdf
TRINITY_DN8_c1_g3:255	si_s797	TRINITY_DN8_c1_g3	244	263	255	-30.00	-21.30	0.71	7.5	1-4,263-260;6-9,259-256;11-21,254-244	5-5,x-x[BULq];10-10,255-255[SIL]	(((((((((((.((((-((((&)))).)))).)))))))))))	UAACGAGGAUACGGUG-GAGC&GCUCGUAUUUUAUCUUCGUUA	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN8_c1_g3_255_TPlot.pdf
TRINITY_DN8_c1_g3:256	si_s796	TRINITY_DN8_c1_g3	245	264	256	-30.30	-20.00	0.66006600660066	8.5	2-5,263-260;7-10,259-256;12-21,254-245	1-1,264-264[UP5];6-6,x-x[BULq];11-11,255-255[SIL]	((((((((((.((((-((((.&.)))).)))).))))))))))	AACGAGGAUACGGUG-GAGCA&AGCUCGUAUUUUAUCUUCGUU	4	0.99999952162128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN8_c1_g3_256_TPlot.pdf
TRINITY_DN8_c1_g3:90	si_a787	TRINITY_DN8_c1_g3	79	96	90	-26.30	-17.54	0.666920152091255	10	1-6,96-91;11-20,89-80	7-10,90-90[AILq];21-21,79-79[UP3]	.((((((((((.---((((((&))))))....)))))))))).	AGGAAGAUGGAC---UAGAAG&CUUCUAUUUUUCUAUUUUCCA	4	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN8_c1_g3_90_TPlot.pdf
TRINITY_DN9001_c0_g1:457	si_a409	TRINITY_DN9001_c0_g1	446	467	457	-19.50	-12.90	0.661538461538462	9	1-4,467-464;5-16,462-451	x-x,463-463[BULt];17-21,450-446[UP3]	.....((((((((((((.((((&))))-)))))))))))).....	AACACUAAAUAUAAGCAUAAGC&GUUU-UGUUUAUAUUUAAAUAA	2	0.999999997548866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN9001_c0_g1_457_TPlot.pdf
TRINITY_DN9001_c0_g1:458	si_a408	TRINITY_DN9001_c0_g1	447	468	458	-20.10	-13.70	0.681592039800995	8	1-5,468-464;6-17,462-451	x-x,463-463[BULt];18-21,450-447[UP3]	....((((((((((((.(((((&)))))-))))))))))))....	ACACUAAAUAUAAGCAUAAGCA&UGUUU-UGUUUAUAUUUAAAUA	4	0.999999997624242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN9001_c0_g1_458_TPlot.pdf
TRINITY_DN9001_c0_g1:461	si_a405	TRINITY_DN9001_c0_g1	450	471	461	-19.80	-13.80	0.696969696969697	10	4-8,468-464;9-20,462-451	1-3,471-469[UP5];x-x,463-463[BULt];21-21,450-450[UP3]	.((((((((((((.(((((...&...)))))-)))))))))))).	CUAAAUAUAAGCAUAAGCACCU&AAUUGUUU-UGUUUAUAUUUAA	4	0.999999999999889	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN9001_c0_g1_461_TPlot.pdf
TRINITY_DN9002_c0_g1:576	si_a149	TRINITY_DN9002_c0_g1	565	586	576	-29.40	-21.80	0.741496598639456	7	1-8,586-579;9-20,577-566	x-x,578-578[BULt];21-21,565-565[UP3]	.((((((((((((.((((((((&))))))))-)))))))))))).	UUUGAUUUUGAGACCAGCAACG&CGUUGUUG-UUUUAAGGUCAAU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN9002_c0_g1_576_TPlot.pdf
TRINITY_DN9002_c0_g1:579	si_a147	TRINITY_DN9002_c0_g1	567	588	579	-30.40	-20.90	0.6875	8.5	3-10,586-579;11-21,577-567	1-2,588-587[UP5];x-x,578-578[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	UGAUUUUGAGACCAGCAACGGA&AUCGUUGUUG-UUUUAAGGUCA	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN9002_c0_g1_579_TPlot.pdf
TRINITY_DN9002_c0_g1:580	si_a146	TRINITY_DN9002_c0_g1	568	589	580	-29.70	-19.40	0.653198653198653	10	4-11,586-579;12-21,577-568	1-3,589-587[UP5];x-x,578-578[BULt]	((((((((((.((((((((...&...))))))))-))))))))))	GAUUUUGAGACCAGCAACGGAA&AAUCGUUGUUG-UUUUAAGGUC	2	0.999986346763381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN9002_c0_g1_580_TPlot.pdf
TRINITY_DN9002_c0_g1:703	si_a565	TRINITY_DN9002_c0_g1	692	713	703	-37.40	-26.70	0.713903743315508	7.5	1-6,713-708;7-16,706-697	x-x,707-707[BULt];17-21,696-692[UP3]	.....((((((((((.((((((&))))))-)))))))))).....	CGGUAACGAUUCACGUGGGAGG&UCUCCC-CGUGAAUCGUAUGUU	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a565_TRINITY_DN9002_c0_g1_703_TPlot.pdf
TRINITY_DN9002_c0_g1:711	si_a558	TRINITY_DN9002_c0_g1	699	720	711	-35.40	-23.46	0.66271186440678	11	2-3,719-718;8-13,713-708;14-21,706-699	1-1,720-720[UP5];4-7,717-714[SIL];x-x,707-707[BULt]	((((((((.((((((....((.&.))....))))))-))))))))	GAUUCACGUGGGAGGGAGUGAC&UUCUUUAUCUCCC-CGUGAAUC	2	0.843465082064179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a558_TRINITY_DN9002_c0_g1_711_TPlot.pdf
TRINITY_DN9003_c0_g1:968	si_s745	TRINITY_DN9003_c0_g1	957	977	968	-28.90	-19.00	0.657439446366782	9.5	4-21,974-957	1-3,977-975[UP5]	((((((((((((((((((...&...))))))))))))))))))	UGUUUUAGGGUUGAUUUGGAA&GAAUAGAUUGACCUUAAAACA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s745_TRINITY_DN9003_c0_g1_968_TPlot.pdf
TRINITY_DN9004_c0_g1:1329	si_a474	TRINITY_DN9004_c0_g1	1318	1338	1329	-23.60	-16.30	0.690677966101695	6	2-4,1337-1335;6-13,1333-1326;15-21,1324-1318	1-1,1338-1338[UP5];5-5,1334-1334[SIL];14-14,1325-1325[SIL]	(((((((.((((((((.(((.&.))).)))))))).)))))))	UCUAUAUUACAAUGAUGGCAG&AUGUAAUUAUUGUUAUAUAGA	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN9004_c0_g1_1329_TPlot.pdf
TRINITY_DN9004_c0_g1:2941	si_a649	TRINITY_DN9004_c0_g1	2930	2950	2941	-32.90	-21.66	0.658358662613982	10	1-4,2950-2947;9-16,2942-2935;19-21,2932-2930	5-8,2946-2943[SIL];17-18,2934-2933[SIL]	(((..((((((((....((((&))))....))))))))..)))	GCAGGUCCCGAUAAGAAACUC&GAGUAAUAUAUCGGGAAAUGC	3	0.771861381162335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a649_TRINITY_DN9004_c0_g1_2941_TPlot.pdf
TRINITY_DN9004_c0_g1:2950	si_a319	TRINITY_DN9004_c0_g1	2939	2959	2950	-22.40	-15.90	0.709821428571429	10	5-11,2955-2949;13-21,2947-2939	1-4,2959-2956[UP5];12-12,2948-2948[SIL]	(((((((((.(((((((....&....))))))).)))))))))	GAUAAGAAACUCAUGGACACU&UUUAUCCAUGAUUUUUUUAUU	3	0.999999340269439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN9004_c0_g1_2950_TPlot.pdf
TRINITY_DN9004_c0_g1:3064	si_a776	TRINITY_DN9004_c0_g1	3053	3073	3064	-27.10	-19.50	0.719557195571956	11	3-16,3071-3058	1-2,3073-3072[UP5];17-21,3057-3053[UP3]	.....((((((((((((((..&..)))))))))))))).....	CCUACGGGAGAGUUGGGUCCA&UUGAUUCAACUCUUCUAUUUU	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a776_TRINITY_DN9004_c0_g1_3064_TPlot.pdf
TRINITY_DN9004_c0_g1:3065	si_a775	TRINITY_DN9004_c0_g1	3054	3074	3065	-27.20	-19.50	0.716911764705882	12	4-17,3071-3058	1-3,3074-3072[UP5];18-21,3057-3054[UP3]	....((((((((((((((...&...))))))))))))))....	CUACGGGAGAGUUGGGUCCAA&AUUGAUUCAACUCUUCUAUUU	3	0.896409788661507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a775_TRINITY_DN9004_c0_g1_3065_TPlot.pdf
TRINITY_DN9004_c0_g1:3092	si_a324	TRINITY_DN9004_c0_g1	3080	3101	3092	-27.50	-18.80	0.683636363636364	6	1-13,3101-3089;15-17,3087-3085;18-20,3083-3081	14-14,3088-3088[SIL];x-x,3084-3084[BULt];21-21,3080-3080[UP3]	.(((.(((.(((((((((((((&))))))))))))).)))-))).	AAAGUGAAAAGAAGAAUCGUGG&CCAUGAUUUUUUUAUUC-CUUG	2	0.984730623737313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN9004_c0_g1_3092_TPlot.pdf
TRINITY_DN9004_c0_g1:3093	si_a323	TRINITY_DN9004_c0_g1	3081	3102	3093	-26.80	-20.00	0.746268656716418	4.5	1-14,3102-3089;16-18,3087-3085;19-21,3083-3081	15-15,3088-3088[SIL];x-x,3084-3084[BULt]	(((.(((.((((((((((((((&)))))))))))))).)))-)))	AAGUGAAAAGAAGAAUCGUGGA&UCCAUGAUUUUUUUAUUC-CUU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN9004_c0_g1_3093_TPlot.pdf
TRINITY_DN9004_c0_g1:3095	si_a321	TRINITY_DN9004_c0_g1	3084	3104	3095	-26.70	-18.10	0.677902621722847	7.5	3-16,3102-3089;18-20,3087-3085	1-2,3104-3103[UP5];17-17,3088-3088[SIL];21-21,3084-3084[UP3]	.(((.((((((((((((((..&..)))))))))))))).))).	UGAAAAGAAGAAUCGUGGAAC&UAUCCAUGAUUUUUUUAUUCC	2	0.989356908938648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9004_c0_g1_3095_TPlot.pdf
TRINITY_DN9004_c0_g1:3096	si_a320	TRINITY_DN9004_c0_g1	3085	3105	3096	-24.40	-18.10	0.741803278688525	8	4-17,3102-3089;19-21,3087-3085	1-3,3105-3103[UP5];18-18,3088-3088[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GAAAAGAAGAAUCGUGGAACA&UUAUCCAUGAUUUUUUUAUUC	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN9004_c0_g1_3096_TPlot.pdf
TRINITY_DN9004_c0_g1:3097	si_a319	TRINITY_DN9004_c0_g1	3086	3106	3097	-22.40	-16.40	0.732142857142857	12	5-18,3102-3089	1-4,3106-3103[UP5];19-21,3088-3086[UP3]	...((((((((((((((....&....))))))))))))))...	AAAAGAAGAAUCGUGGAACAA&UUUAUCCAUGAUUUUUUUAUU	4	0.999920005932043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN9004_c0_g1_3097_TPlot.pdf
TRINITY_DN9008_c0_g1:298	si_a73	TRINITY_DN9008_c0_g1	287	307	298	-21.90	-15.50	0.707762557077626	7.5	1-6,307-302;8-19,300-289	7-7,301-301[SIL];20-21,288-287[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	AUUGGUGGAAGAUAUUUUGAA&UUCAAAUUGUUUUUCAUUAUU	2	0.999435819007082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN9008_c0_g1_298_TPlot.pdf
TRINITY_DN9008_c0_g1:299	si_a72	TRINITY_DN9008_c0_g1	288	308	299	-21.90	-16.40	0.748858447488584	6.5	1-7,308-302;9-20,300-289	8-8,301-301[SIL];21-21,288-288[UP3]	.((((((((((((.(((((((&))))))).)))))))))))).	UUGGUGGAAGAUAUUUUGAAA&UUUCAAAUUGUUUUUCAUUAU	2	0.97809340819246	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN9008_c0_g1_299_TPlot.pdf
TRINITY_DN900_c3_g1:737	si_s14	TRINITY_DN900_c3_g1	726	746	737	-25.30	-16.70	0.660079051383399	4.5	1-12,746-735;15-20,732-727	13-14,734-733[SIL];21-21,726-726[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	ACAAUUAUCAUAGUGAUAAUA&UAUUAUUACUAUAUUGAUUGC	4	0.997913078676323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s14_TRINITY_DN900_c3_g1_737_TPlot.pdf
TRINITY_DN9013_c0_g1:1095	si_a668	TRINITY_DN9013_c0_g1	1084	1104	1095	-33.20	-24.60	0.740963855421687	7.5	2-10,1103-1095;12-20,1093-1085	1-1,1104-1104[UP5];11-11,1094-1094[SIL];21-21,1084-1084[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	CUGGAUAAGGUGUCAGUGGGA&GCCUAUUGAUUCCUUAUUCAC	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a668_TRINITY_DN9013_c0_g1_1095_TPlot.pdf
TRINITY_DN9013_c0_g1:2794	si_a761	TRINITY_DN9013_c0_g1	2783	2803	2794	-30.10	-22.10	0.73421926910299	7.5	2-18,2802-2786	1-1,2803-2803[UP5];19-21,2785-2783[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UUCCAGUUGGAAACCCAAGGA&CCUUUGGGUUUUUGAUUGAUU	3	0.964571442498462	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN9013_c0_g1_2794_TPlot.pdf
TRINITY_DN9013_c0_g1:2804	si_a503	TRINITY_DN9013_c0_g1	2793	2817	2804	-32.10	-21.80	0.679127725856698	15	1-8,2817-2810;9-17,2805-2797	x-x,2809-2806[BULt];18-21,2796-2793[UP3]	....(((((((((....((((((((&))))))))----)))))))))....	AAACCCAAGGAAGAUCUGCGAGAGA&UUUUUCGU----CUUCCUUGGAAUG	3	0.999992952957843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN9013_c0_g1_2804_TPlot.pdf
TRINITY_DN9015_c0_g1:1005	si_a19	TRINITY_DN9015_c0_g1	992	1013	1005	-27.00	-18.30	0.677777777777778	10.5	1-5,1013-1009;7-12,1008-1003;13-21,1000-992	6-6,x-x[BULq];x-x,1002-1001[BULt]	(((((((((..((((((-(((((&))))).))))))--)))))))))	AGGACUGGAGGGAUGAG-AGGCU&AGCCUAUUUAUU--UUUAGUUCU	2	0.995490768745023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN9015_c0_g1_1005_TPlot.pdf
TRINITY_DN9015_c0_g1:4359	si_a501	TRINITY_DN9015_c0_g1	4347	4368	4359	-33.50	-23.80	0.71044776119403	6	2-10,4367-4359;11-17,4357-4351;19-21,4349-4347	1-1,4368-4368[UP5];x-x,4358-4358[BULt];18-18,4350-4350[SIL]	(((.(((((((.(((((((((.&.)))))))))-))))))).)))	UUUGGAGGAAGUACGAAAAGCU&CGUUUUUCGU-CUUCCUUGGAA	2	0.987487715898913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN9015_c0_g1_4359_TPlot.pdf
TRINITY_DN9015_c0_g1:4362	si_a498	TRINITY_DN9015_c0_g1	4350	4378	4362	-33.50	-22.80	0.680597014925373	17.5	1-7,4378-4372;8-13,4364-4359;14-20,4357-4351	x-x,4371-4365[BULt];x-x,4358-4358[BULt];21-21,4350-4350[UP3]	.(((((((.((((((.......(((((((&)))))))-------))))))-))))))).	GGAGGAAGUACGAAAAGCUUUAGACGACA&UGUCGUU-------UUUCGU-CUUCCUUG	4	0.999999994685875	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9015_c0_g1_4362_TPlot.pdf
TRINITY_DN901_c0_g1:1105	si_a787	TRINITY_DN901_c0_g1	1095	1114	1105	-26.30	-19.52	0.742205323193916	5.5	1-13,1114-1102;18-20,1098-1096	14-17,1101-1099[AILq];21-21,1095-1095[UP3]	.(((...-(((((((((((((&)))))))))))))....))).	AGGAUGG-GGAAAAAUAGAAG&CUUCUAUUUUUCUAUUUUCCA	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN901_c0_g1_1105_TPlot.pdf
TRINITY_DN901_c0_g1:1106	si_a786	TRINITY_DN901_c0_g1	1096	1115	1106	-26.60	-20.62	0.775187969924812	4.5	1-14,1115-1102;19-21,1098-1096	15-18,1101-1099[AILq]	(((...-((((((((((((((&))))))))))))))....)))	GGAUGG-GGAAAAAUAGAAGA&UCUUCUAUUUUUCUAUUUUCC	3	0.910096595304674	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN901_c0_g1_1106_TPlot.pdf
TRINITY_DN901_c0_g1:1107	si_a785	TRINITY_DN901_c0_g1	1096	1116	1107	-25.90	-18.48	0.713513513513514	5	2-15,1115-1102;19-21,1098-1096	1-1,1116-1116[UP5];16-18,1101-1099[SIL]	(((...((((((((((((((.&.))))))))))))))...)))	GGAUGGGGAAAAAUAGAAGAA&CUCUUCUAUUUUUCUAUUUUC	2	0.999962583392229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN901_c0_g1_1107_TPlot.pdf
TRINITY_DN901_c0_g1:1111	si_a781	TRINITY_DN901_c0_g1	1100	1119	1111	-27.40	-18.00	0.656934306569343	6.5	1-3,1119-1117;6-19,1115-1102	4-5,1116-1116[AILq];20-21,1101-1100[UP3]	..((((((((((((((.-(((&)))..))))))))))))))..	GGGGAAAAAUAGAAGAA-UGA&UCAACUCUUCUAUUUUUCUAU	4	0.999999772470979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN901_c0_g1_1111_TPlot.pdf
TRINITY_DN901_c0_g1:1113	si_a779	TRINITY_DN901_c0_g1	1102	1121	1113	-27.00	-18.50	0.685185185185185	5.5	2-5,1120-1117;8-21,1115-1102	1-1,1121-1121[UP5];6-7,1116-1116[AILq]	((((((((((((((.-((((.&.))))..))))))))))))))	GGAAAAAUAGAAGAA-UGAAA&AUUCAACUCUUCUAUUUUUCU	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN901_c0_g1_1113_TPlot.pdf
TRINITY_DN901_c0_g1:743	si_s79	TRINITY_DN901_c0_g1	732	752	743	-26.20	-18.00	0.687022900763359	12	6-12,747-741;14-21,739-732	1-5,752-748[UP5];13-13,740-740[SIL]	((((((((.(((((((.....&.....))))))).))))))))	AGGAAGGAUGGGAAGAUGUUA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN901_c0_g1_743_TPlot.pdf
TRINITY_DN901_c0_g1:873	si_s72	TRINITY_DN901_c0_g1	853	882	873	-24.10	-16.10	0.66804979253112	21.5	1-11,882-872;12-19,862-855	x-x,871-863[BULt];20-21,854-853[UP3]	..((((((((.........(((((((((((&)))))))))))---------))))))))..	ACGGAAAGAAUAAAUCCUCGAAAAAUAGAG&UUCUAUUUUUU---------UUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN901_c0_g1_873_TPlot.pdf
TRINITY_DN9022_c0_g1:1347	si_a757	TRINITY_DN9022_c0_g1	1333	1356	1347	-33.10	-21.60	0.652567975830816	9.5	2-9,1355-1348;11-16,1346-1341;17-21,1337-1333	1-1,1356-1356[UP5];10-10,1347-1347[SIL];x-x,1340-1338[BULt]	(((((...((((((.((((((((.&.)))))))).))))))---)))))	AAUCGGACAAAACUGGAGGGAGGC&ACCUCCUUUGGGUUUU---UGAUU	4	0.999999999980636	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN9022_c0_g1_1347_TPlot.pdf
TRINITY_DN9022_c0_g1:1379	si_a327	TRINITY_DN9022_c0_g1	1363	1388	1379	-28.40	-19.90	0.700704225352113	16	2-6,1387-1383;8-12,1381-1377;13-21,1371-1363	1-1,1388-1388[UP5];7-7,1382-1382[SIL];x-x,1376-1372[BULt]	(((((((((.....(((((.(((((.&.))))).)))))-----)))))))))	GGACAAGGAUGGCUGUAGACAAGUCG&UGAUUUUUUUAU-----UCCUUGUCC	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN9022_c0_g1_1379_TPlot.pdf
TRINITY_DN9025_c0_g1:149	si_a506	TRINITY_DN9025_c0_g1	138	158	149	-33.40	-22.20	0.664670658682635	6.5	1-9,158-150;11-16,148-143;18-20,141-139	10-10,149-149[SIL];17-17,142-142[SIL];21-21,138-138[UP3]	.(((.((((((.(((((((((&))))))))).)))))).))).	GUGCUUUCCAAAGAAGGCGGA&UUCGUCUUCCUUGGAAUGUAA	4	0.999693963058563	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a506_TRINITY_DN9025_c0_g1_149_TPlot.pdf
TRINITY_DN9025_c0_g1:150	si_a505	TRINITY_DN9025_c0_g1	139	159	150	-33.30	-22.40	0.672672672672673	6	1-10,159-150;12-17,148-143;19-21,141-139	11-11,149-149[SIL];18-18,142-142[SIL]	(((.((((((.((((((((((&)))))))))).)))))).)))	UGCUUUCCAAAGAAGGCGGAG&UUUCGUCUUCCUUGGAAUGUA	3	0.999779903880706	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN9025_c0_g1_150_TPlot.pdf
TRINITY_DN9025_c0_g1:151	si_a504	TRINITY_DN9025_c0_g1	140	160	151	-32.90	-21.40	0.650455927051672	7.5	2-11,159-150;13-18,148-143;20-21,141-140	1-1,160-160[UP5];12-12,149-149[SIL];19-19,142-142[SIL]	((.((((((.((((((((((.&.)))))))))).)))))).))	GCUUUCCAAAGAAGGCGGAGC&UUUUCGUCUUCCUUGGAAUGU	3	0.999999993730206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN9025_c0_g1_151_TPlot.pdf
TRINITY_DN9025_c0_g1:165	si_a494	TRINITY_DN9025_c0_g1	150	174	165	-29.50	-19.90	0.674576271186441	18	5-12,170-163;13-21,158-150	1-4,174-171[UP5];x-x,162-159[BULt]	(((((((((....((((((((....&....))))))))----)))))))))	GAAGGCGGAGCAAAGGCGACAGCUU&AAUAUGUCGUUU----UUCGUCUUC	2	0.999996933800801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN9025_c0_g1_165_TPlot.pdf
TRINITY_DN9025_c0_g1:205	si_s89	TRINITY_DN9025_c0_g1	185	214	205	-35.30	-24.20	0.685552407932011	12.5	1-14,214-201;15-17,191-189;19-21,187-185	x-x,200-192[BULt];18-18,188-188[SIL]	(((.(((.........((((((((((((((&))))))))))))))---------))).)))	CGAUGCGGCUCCUGAAGAGAAGGAGAGAGG&CCUUUCUUCUUCUU---------CGCUUCG	3	0.99999999929573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9025_c0_g1_205_TPlot.pdf
TRINITY_DN9025_c0_g1:207	si_s80	TRINITY_DN9025_c0_g1	195	216	207	-28.20	-18.40	0.652482269503546	11.5	3-12,214-205;13-18,203-198	1-2,216-215[UP5];x-x,204-204[BULt];19-21,197-195[UP3]	...((((((.((((((((((..&..))))))))))-))))))...	CCUGAAGAGAAGGAGAGAGGUA&UUUUUCUUUCCU-UUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9025_c0_g1_207_TPlot.pdf
TRINITY_DN9025_c0_g1:209	si_s68	TRINITY_DN9025_c0_g1	198	217	209	-23.10	-15.80	0.683982683982684	9.5	3-8,215-210;10-21,209-198	1-2,217-216[UP5];9-9,x-x[BULq]	((((((((((((-((((((..&..)))))).))))))))))))	GAAGAGAAGGAG-AGAGGUAU&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9025_c0_g1_209_TPlot.pdf
TRINITY_DN9025_c0_g1:211	si_s83	TRINITY_DN9025_c0_g1	200	220	211	-30.90	-20.20	0.653721682847896	14	7-20,214-201	1-6,220-215[UP5];21-21,200-200[UP3]	.((((((((((((((......&......)))))))))))))).	AGAGAAGGAGAGAGGUAUAAC&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9025_c0_g1_211_TPlot.pdf
TRINITY_DN9025_c0_g1:212	si_s82	TRINITY_DN9025_c0_g1	201	221	212	-28.90	-20.00	0.69204152249135	15	8-21,214-201	1-7,221-215[UP5]	((((((((((((((.......&.......))))))))))))))	GAGAAGGAGAGAGGUAUAACA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9025_c0_g1_212_TPlot.pdf
TRINITY_DN9025_c0_g1:213	si_s81	TRINITY_DN9025_c0_g1	202	222	213	-28.90	-18.90	0.653979238754325	16.5	9-21,214-202	1-8,222-215[UP5]	(((((((((((((........&........)))))))))))))	AGAAGGAGAGAGGUAUAACAA&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9025_c0_g1_213_TPlot.pdf
TRINITY_DN9025_c0_g1:837	si_a81	TRINITY_DN9025_c0_g1	826	847	837	-23.00	-15.80	0.68695652173913	10.5	1-7,847-841;9-18,838-829	8-8,840-839[AILt];19-21,828-826[UP3]	...((((((((((..(((((((&)))))))-.))))))))))...	AGCUUCUUGAUAGCGGAGAAGC&GUUUUUC-AUUAUUAAGAAAAG	3	0.98324837372218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a81_TRINITY_DN9025_c0_g1_837_TPlot.pdf
TRINITY_DN9028_c0_g1:2279	si_a447	TRINITY_DN9028_c0_g1	2268	2288	2279	-25.70	-17.50	0.680933852140078	14.5	6-20,2283-2269	1-5,2288-2284[UP5];21-21,2268-2268[UP3]	.(((((((((((((((.....&.....))))))))))))))).	GGUGGCGGCAGUUGUCGUUGC&UAUGAGAUAAUUGUUGUUAUA	4	0.992015970243414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN9028_c0_g1_2279_TPlot.pdf
TRINITY_DN902_c0_g1:1399	si_a80	TRINITY_DN902_c0_g1	1386	1408	1399	-22.10	-14.58	0.65972850678733	13	1-11,1408-1398;14-19,1393-1388	12-13,1397-1394[AILt];20-21,1387-1386[UP3]	..((((((....(((((((((((&)))))))))))--..))))))..	GGUUCUUAUUGGAGUGGAGGACA&UGUUUUUCAUU--AUUAAGAAAA	3	0.999999740017609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN902_c0_g1_1399_TPlot.pdf
TRINITY_DN902_c0_g1:1402	si_a77	TRINITY_DN902_c0_g1	1389	1411	1402	-22.20	-15.88	0.715315315315315	8.5	2-14,1410-1398;17-21,1393-1389	1-1,1411-1411[UP5];15-16,1397-1394[AILt]	(((((....(((((((((((((.&.)))))))))))))--..)))))	UCUUAUUGGAGUGGAGGACAAUG&AAUUGUUUUUCAUU--AUUAAGA	3	0.997959624632748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a77_TRINITY_DN902_c0_g1_1402_TPlot.pdf
TRINITY_DN902_c0_g1:1582	si_s81	TRINITY_DN902_c0_g1	1571	1591	1582	-28.90	-19.10	0.660899653979239	5.5	1-8,1591-1584;10-17,1582-1575;19-21,1573-1571	9-9,1583-1583[SIL];18-18,1574-1574[SIL]	(((.((((((((.((((((((&)))))))).)))))))).)))	AGAUGAAGAAAGCGAGGAAAG&UUUUCUUUCCUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN902_c0_g1_1582_TPlot.pdf
TRINITY_DN902_c0_g1:1783	si_a151	TRINITY_DN902_c0_g1	1772	1792	1783	-28.90	-18.80	0.650519031141869	9	2-8,1791-1785;10-16,1783-1777	1-1,1792-1792[UP5];9-9,1784-1784[SIL];17-21,1776-1772[UP3]	.....(((((((.(((((((.&.))))))).))))))).....	GAAGCGACCUUAUAACAGCAU&UUGUUGUUUUAAGGUCAAUCU	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN902_c0_g1_1783_TPlot.pdf
TRINITY_DN902_c0_g1:654	si_a637	TRINITY_DN902_c0_g1	643	664	654	-25.80	-18.00	0.697674418604651	7	1-5,664-660;6-18,658-646	x-x,659-659[BULt];19-21,645-643[UP3]	...(((((((((((((.(((((&)))))-)))))))))))))...	AAUUUACUCAAAAAAAUUUGGC&GUCGA-UUUUUUUGAGUAAUAU	4	0.999963491582945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN902_c0_g1_654_TPlot.pdf
TRINITY_DN9032_c0_g1:811	si_s37	TRINITY_DN9032_c0_g1	800	825	811	-24.40	-16.20	0.663934426229508	13.5	1-9,825-817;10-15,811-806;17-21,804-800	x-x,816-812[BULt];16-16,805-805[SIL]	(((((.((((((.....(((((((((&)))))))))-----)))))).)))))	GUCCAUUUAUUGCAAACAAGAUUUGG&CUAAAUCUU-----UAAUAAUUGGAU	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN9032_c0_g1_811_TPlot.pdf
TRINITY_DN9032_c0_g1:817	si_s36	TRINITY_DN9032_c0_g1	801	826	817	-25.00	-16.70	0.668	13	1-10,826-817;11-16,811-806;18-21,804-801	x-x,816-812[BULt];17-17,805-805[SIL]	((((.((((((.....((((((((((&))))))))))-----)))))).))))	UCCAUUUAUUGCAAACAAGAUUUGGU&ACUAAAUCUU-----UAAUAAUUGGA	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s36_TRINITY_DN9032_c0_g1_817_TPlot.pdf
TRINITY_DN9034_c0_g1:1304	si_s607	TRINITY_DN9034_c0_g1	1293	1313	1304	-27.60	-22.90	0.829710144927536	6	3-20,1311-1294	1-2,1313-1312[UP5];21-21,1293-1293[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	CUGGGUUUGAGAAAGAUUCAU&GCGAAUCUUUUUUAAAUCCAA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s607_TRINITY_DN9034_c0_g1_1304_TPlot.pdf
TRINITY_DN9034_c0_g1:1305	si_s606	TRINITY_DN9034_c0_g1	1294	1314	1305	-28.20	-22.60	0.801418439716312	7	4-21,1311-1294	1-3,1314-1312[UP5]	((((((((((((((((((...&...))))))))))))))))))	UGGGUUUGAGAAAGAUUCAUU&AGCGAAUCUUUUUUAAAUCCA	4	0.040444111839177	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN9034_c0_g1_1305_TPlot.pdf
TRINITY_DN9034_c0_g1:1342	si_s18	TRINITY_DN9034_c0_g1	1328	1351	1342	-27.50	-18.40	0.669090909090909	8	3-10,1349-1342;11-17,1339-1333;18-21,1331-1328	1-2,1351-1350[UP5];x-x,1341-1340[BULt];x-x,1332-1332[BULt]	((((.(((((((..((((((((..&..))))))))--)))))))-))))	AGUUAGCAAUCAUUAUAUAGUACA&AUUACUAUAU--UGAUUGC-AACU	2	0.861784008888207	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s18_TRINITY_DN9034_c0_g1_1342_TPlot.pdf
TRINITY_DN9034_c0_g1:1458	si_s108	TRINITY_DN9034_c0_g1	1444	1467	1458	-27.60	-20.84	0.755072463768116	11.5	1-10,1467-1458;12-19,1453-1446	11-11,1457-1454[AILt];20-21,1445-1444[UP3]	..((((((((....((((((((((&))))))))))---.))))))))..	UGUUUUCUGUGUAGUUCCAGUCCG&CGGAUUGGAA---AAUAGAAAAAU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s108_TRINITY_DN9034_c0_g1_1458_TPlot.pdf
TRINITY_DN9035_c0_g1:588	si_a98	TRINITY_DN9035_c0_g1	577	597	588	-26.40	-17.30	0.65530303030303	10	3-11,595-587;13-18,585-580	1-2,597-596[UP5];12-12,586-586[SIL];19-21,579-577[UP3]	...((((((.(((((((((..&..))))))))).))))))...	AGCUUUGUUAUCGUUGCCUAU&AAAGGUAACGAAGAUAAAAUA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN9035_c0_g1_588_TPlot.pdf
TRINITY_DN9036_c0_g1:145	si_a629	TRINITY_DN9036_c0_g1	134	154	145	-26.30	-20.10	0.76425855513308	6	2-20,153-135	1-1,154-154[UP5];21-21,134-134[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	UGAGAAAAUUGAUAUAAUGCA&CGUAUUAUGUCGAUUUUUUUG	3	0.536647289092316	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a629_TRINITY_DN9036_c0_g1_145_TPlot.pdf
TRINITY_DN9036_c0_g1:454	si_s77	TRINITY_DN9036_c0_g1	443	464	454	-25.50	-16.60	0.650980392156863	11	4-9,461-456;10-20,454-444	1-3,464-462[UP5];x-x,455-455[BULt];21-21,443-443[UP3]	.(((((((((((.((((((...&...))))))-))))))))))).	UGAGAAGGGGAGUGAAAAAUGU&UUUUUUUUC-UUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9036_c0_g1_454_TPlot.pdf
TRINITY_DN9036_c0_g1:751	si_s87	TRINITY_DN9036_c0_g1	740	761	751	-32.90	-23.10	0.702127659574468	6.5	1-6,761-756;7-18,754-743	x-x,755-755[BULt];19-21,742-740[UP3]	...((((((((((((.((((((&))))))-))))))))))))...	AUAUGAAGAAGAAGAGGAGGAA&UUCCUU-UCUUCUUCUUCGCUU	4	0.999999999907035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9036_c0_g1_751_TPlot.pdf
TRINITY_DN9036_c0_g1:754	si_s84	TRINITY_DN9036_c0_g1	743	763	754	-32.30	-24.40	0.755417956656347	6	1-6,763-758;8-20,756-744	7-7,757-757[SIL];21-21,743-743[UP3]	.(((((((((((((.((((((&)))))).))))))))))))).	UGAAGAAGAAGAGGAGGAAGA&UCUUUCCUUUCUUCUUCUUCG	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN9036_c0_g1_754_TPlot.pdf
TRINITY_DN9036_c0_g1:756	si_s82	TRINITY_DN9036_c0_g1	745	765	756	-28.90	-21.80	0.754325259515571	6	2-8,764-758;10-21,756-745	1-1,765-765[UP5];9-9,757-757[SIL]	((((((((((((.(((((((.&.))))))).))))))))))))	AAGAAGAAGAGGAGGAAGAAG&UUUCUUUCCUUUCUUCUUCUU	4	0.999999983116437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9036_c0_g1_756_TPlot.pdf
TRINITY_DN9036_c0_g1:757	si_s81	TRINITY_DN9036_c0_g1	746	766	757	-28.90	-22.40	0.775086505190311	6	1-9,766-758;11-21,756-746	10-10,757-757[SIL]	(((((((((((.(((((((((&))))))))).)))))))))))	AGAAGAAGAGGAGGAAGAAGA&UUUUCUUUCCUUUCUUCUUCU	3	0.99999520307726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9036_c0_g1_757_TPlot.pdf
TRINITY_DN9036_c0_g1:759	si_s76	TRINITY_DN9036_c0_g1	748	768	759	-23.60	-15.60	0.661016949152542	8	3-14,766-755;16-21,753-748	1-2,768-767[UP5];15-15,754-754[SIL]	((((((.((((((((((((..&..)))))))))))).))))))	AAGAAGAGGAGGAAGAAGAUG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9036_c0_g1_759_TPlot.pdf
TRINITY_DN9036_c0_g1:762	si_s88	TRINITY_DN9036_c0_g1	750	772	762	-34.80	-24.90	0.71551724137931	6	1-5,772-768;6-16,766-756;18-21,753-750	x-x,767-767[BULt];17-17,755-754[AILt]	((((..(((((((((((.(((((&)))))-)))))))))))-.))))	GAAGAGGAGGAAGAAGAUGAGGG&UCCUU-UCUUCUUCUUC-GCUUC	3	0.999993631342644	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN9036_c0_g1_762_TPlot.pdf
TRINITY_DN9039_c0_g1:836	si_a66	TRINITY_DN9039_c0_g1	827	845	836	-26.70	-19.10	0.715355805243446	7	1-11,845-835;14-18,834-830	12-13,x-x[BULq];19-21,829-827[UP3]	...(((((--(((((((((((&)))))))))))..)))))...	UACGACAG--UGAAAGAAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999860328089599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN9039_c0_g1_836_TPlot.pdf
TRINITY_DN903_c0_g1:2263	si_s68	TRINITY_DN903_c0_g1	2252	2277	2263	-23.10	-15.20	0.658008658008658	15.5	1-8,2277-2270;9-18,2264-2255	x-x,2269-2265[BULt];19-21,2254-2252[UP3]	...((((((((((.....((((((((&))))))))-----))))))))))...	UUUGGAAAAGGAUUACGAAGAAGUUG&CAACUUCU-----AUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN903_c0_g1_2263_TPlot.pdf
TRINITY_DN903_c0_g1:2296	si_s87	TRINITY_DN903_c0_g1	2285	2306	2296	-32.90	-22.90	0.696048632218845	8.5	1-3,2306-2304;4-18,2302-2288	x-x,2303-2303[BULt];19-21,2287-2285[UP3]	...(((((((((((((((.(((&)))-)))))))))))))))...	UUCCGGAGAAGGAGAGGGUGAA&UUC-CUUUCUUCUUCUUCGCUU	2	0.999999877924283	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN903_c0_g1_2296_TPlot.pdf
TRINITY_DN903_c0_g1:2297	si_s86	TRINITY_DN903_c0_g1	2286	2307	2297	-32.90	-23.30	0.708206686930091	8	1-4,2307-2304;5-19,2302-2288	x-x,2303-2303[BULt];20-21,2287-2286[UP3]	..(((((((((((((((.((((&))))-)))))))))))))))..	UCCGGAGAAGGAGAGGGUGAAG&UUUC-CUUUCUUCUUCUUCGCU	3	0.999999998176299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN903_c0_g1_2297_TPlot.pdf
TRINITY_DN903_c0_g1:2299	si_s84	TRINITY_DN903_c0_g1	2288	2309	2299	-32.30	-28.00	0.86687306501548	6	1-6,2309-2304;7-21,2302-2288	x-x,2303-2303[BULt]	(((((((((((((((.((((((&))))))-)))))))))))))))	CGGAGAAGGAGAGGGUGAAGGA&UCUUUC-CUUUCUUCUUCUUCG	4	0.390682997237374	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN903_c0_g1_2299_TPlot.pdf
TRINITY_DN903_c0_g1:2301	si_s82	TRINITY_DN903_c0_g1	2290	2311	2301	-28.90	-24.10	0.833910034602076	8	2-8,2310-2304;9-21,2302-2290	1-1,2311-2311[UP5];x-x,2303-2303[BULt]	(((((((((((((.(((((((.&.)))))))-)))))))))))))	GAGAAGGAGAGGGUGAAGGAGC&UUUCUUUC-CUUUCUUCUUCUU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN903_c0_g1_2301_TPlot.pdf
TRINITY_DN903_c0_g1:2302	si_s81	TRINITY_DN903_c0_g1	2291	2312	2302	-28.90	-22.80	0.788927335640139	9.5	3-9,2310-2304;10-21,2302-2291	1-2,2312-2311[UP5];x-x,2303-2303[BULt]	((((((((((((.(((((((..&..)))))))-))))))))))))	AGAAGGAGAGGGUGAAGGAGCU&UUUUCUUUC-CUUUCUUCUUCU	3	0.999895932315747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN903_c0_g1_2302_TPlot.pdf
TRINITY_DN903_c0_g1:2304	si_s80	TRINITY_DN903_c0_g1	2292	2313	2304	-28.20	-21.50	0.762411347517731	11	4-10,2310-2304;11-21,2302-2292	1-3,2313-2311[UP5];x-x,2303-2303[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	GAAGGAGAGGGUGAAGGAGCUG&UUUUUCUUUC-CUUUCUUCUUC	3	0.999999858358662	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN903_c0_g1_2304_TPlot.pdf
TRINITY_DN903_c0_g1:2305	si_s806	TRINITY_DN903_c0_g1	2294	2314	2305	-28.60	-18.70	0.653846153846154	8.5	1-3,2314-2312;5-8,2310-2307;10-21,2305-2294	4-4,2311-2311[SIL];9-9,2306-2306[SIL]	((((((((((((.((((.(((&))).)))).))))))))))))	AGGAGAGGGUGAAGGAGCUGA&UUAUCUUCGUUACCUUUUCUU	3	0.999999999999981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN903_c0_g1_2305_TPlot.pdf
TRINITY_DN903_c0_g1:2306	si_s805	TRINITY_DN903_c0_g1	2295	2315	2306	-28.60	-18.80	0.657342657342657	8.5	1-4,2315-2312;6-9,2310-2307;11-21,2305-2295	5-5,2311-2311[SIL];10-10,2306-2306[SIL]	(((((((((((.((((.((((&)))).)))).)))))))))))	GGAGAGGGUGAAGGAGCUGAA&UUUAUCUUCGUUACCUUUUCU	2	0.999999927621939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN903_c0_g1_2306_TPlot.pdf
TRINITY_DN903_c0_g1:2308	si_s76	TRINITY_DN903_c0_g1	2296	2319	2308	-23.60	-16.20	0.686440677966102	10.5	1-7,2319-2313;8-14,2310-2304;15-21,2302-2296	x-x,2312-2311[BULt];x-x,2303-2303[BULt]	(((((((.(((((((..(((((((&)))))))--)))))))-)))))))	GAGAGGGUGAAGGAGCUGAAGAAU&AUUUUUU--UUCUUUC-CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN903_c0_g1_2308_TPlot.pdf
TRINITY_DN903_c0_g1:2309	si_s75	TRINITY_DN903_c0_g1	2297	2320	2309	-24.00	-16.00	0.666666666666667	10	1-8,2320-2313;9-15,2310-2304;16-21,2302-2297	x-x,2312-2311[BULt];x-x,2303-2303[BULt]	((((((.(((((((..((((((((&))))))))--)))))))-))))))	AGAGGGUGAAGGAGCUGAAGAAUA&UAUUUUUU--UUCUUUC-CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN903_c0_g1_2309_TPlot.pdf
TRINITY_DN903_c0_g1:759	si_a547	TRINITY_DN903_c0_g1	748	778	759	-26.90	-18.20	0.676579925650558	23.5	1-7,778-772;8-20,761-749	x-x,771-762[BULt];21-21,748-748[UP3]	.(((((((((((((..........(((((((&)))))))----------))))))))))))).	UGGUAAAGAAAUAGUCGACUUAGUGUUGGAC&GUUCAAU----------CUAUUUCUUUAUCU	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN903_c0_g1_759_TPlot.pdf
TRINITY_DN9040_c0_g1:1330	si_s437	TRINITY_DN9040_c0_g1	1319	1339	1330	-19.70	-14.70	0.746192893401015	9	1-4,1339-1336;7-19,1333-1321	5-6,1335-1334[SIL];20-21,1320-1319[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	GAAUAUGUGGUAUGUUUUUGU&AUAAUUACAUAUUAUAUAUAA	4	0.912472160062164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN9040_c0_g1_1330_TPlot.pdf
TRINITY_DN9040_c0_g1:1332	si_s435	TRINITY_DN9040_c0_g1	1321	1341	1332	-20.90	-14.60	0.698564593301435	9.5	3-6,1339-1336;9-21,1333-1321	1-2,1341-1340[UP5];7-8,1335-1334[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	AUAUGUGGUAUGUUUUUGUAA&CAAUAAUUACAUAUUAUAUAU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN9040_c0_g1_1332_TPlot.pdf
TRINITY_DN9040_c2_g1:268	si_a375	TRINITY_DN9040_c2_g1	257	277	268	-24.00	-16.60	0.691666666666667	8	2-3,276-275;5-18,273-260	1-1,277-277[UP5];4-4,274-274[SIL];19-21,259-257[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	UUCUUCGAAGUCGUUUUAGAA&AUCAAAAAUGAUUUCGAAUUA	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a375_TRINITY_DN9040_c2_g1_268_TPlot.pdf
TRINITY_DN9043_c0_g1:1813	si_s3	TRINITY_DN9043_c0_g1	1802	1822	1813	-21.20	-13.80	0.650943396226415	10.5	2-17,1821-1806;20-21,1803-1802	1-1,1822-1822[UP5];18-19,1805-1804[SIL]	((..((((((((((((((((.&.))))))))))))))))..))	AGCCAUAGUGGGUGGUGUGGG&UUUAUAUUACUUAUUAUUACU	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN9043_c0_g1_1813_TPlot.pdf
TRINITY_DN9051_c1_g1:3404	si_a348	TRINITY_DN9051_c1_g1	3393	3414	3404	-21.10	-14.20	0.672985781990521	6.5	1-9,3414-3406;10-19,3404-3395	x-x,3405-3405[BULt];20-21,3394-3393[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUGGUGGAAUUAUAUAUUUUUG&CGAAAAUAU-UAAUUCUAUUUU	3	0.996403497288771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN9051_c1_g1_3404_TPlot.pdf
TRINITY_DN9051_c1_g1:3579	si_s270	TRINITY_DN9051_c1_g1	3566	3588	3579	-25.80	-16.80	0.651162790697674	5	1-13,3588-3576;14-18,3573-3569	x-x,3575-3574[BULt];19-21,3568-3566[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	UUUUUAUGUUUCGAUUUUUUUGA&UCAAAAAAAUCGA--CAUAAUAC	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s270_TRINITY_DN9051_c1_g1_3579_TPlot.pdf
TRINITY_DN9051_c1_g1:3580	si_s269	TRINITY_DN9051_c1_g1	3567	3589	3580	-25.70	-17.00	0.66147859922179	5	2-14,3588-3576;15-19,3573-3569	1-1,3589-3589[UP5];x-x,3575-3574[BULt];20-21,3568-3567[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	UUUUAUGUUUCGAUUUUUUUGAA&CUCAAAAAAAUCGA--CAUAAUA	3	0.690916540012195	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s269_TRINITY_DN9051_c1_g1_3580_TPlot.pdf
TRINITY_DN9051_c1_g1:3581	si_s268	TRINITY_DN9051_c1_g1	3568	3590	3581	-26.10	-17.00	0.651340996168582	6	3-15,3588-3576;16-20,3573-3569	1-2,3590-3589[UP5];x-x,3575-3574[BULt];21-21,3568-3568[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	UUUAUGUUUCGAUUUUUUUGAAU&ACUCAAAAAAAUCGA--CAUAAU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s268_TRINITY_DN9051_c1_g1_3581_TPlot.pdf
TRINITY_DN9051_c1_g1:3925	si_a348	TRINITY_DN9051_c1_g1	3914	3935	3925	-21.10	-14.20	0.672985781990521	6.5	1-9,3935-3927;10-19,3925-3916	x-x,3926-3926[BULt];20-21,3915-3914[UP3]	..((((((((((.(((((((((&)))))))))-))))))))))..	AUGGUGGAAUUAUAUAUUUUUG&CGAAAAUAU-UAAUUCUAUUUU	3	0.995127438276318	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a348_TRINITY_DN9051_c1_g1_3925_TPlot.pdf
TRINITY_DN9051_c1_g1:415	si_s705	TRINITY_DN9051_c1_g1	404	424	415	-31.40	-21.06	0.670700636942675	11.5	1-5,424-420;10-20,415-405	6-9,419-416[SIL];21-21,404-404[UP3]	.(((((((((((....(((((&)))))....))))))))))).	GUUCCUGUUCACGUCAGAGUC&GAUUUAUUAGUGAACAGGGAA	3	0.828164200508302	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s705_TRINITY_DN9051_c1_g1_415_TPlot.pdf
TRINITY_DN9051_c1_g1:4329	si_s270	TRINITY_DN9051_c1_g1	4316	4338	4329	-25.80	-16.80	0.651162790697674	5	1-13,4338-4326;14-18,4323-4319	x-x,4325-4324[BULt];19-21,4318-4316[UP3]	...(((((..(((((((((((((&)))))))))))))--)))))...	UUUUUAUGUUUCGAUUUUUUUGA&UCAAAAAAAUCGA--CAUAAUAC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s270_TRINITY_DN9051_c1_g1_4329_TPlot.pdf
TRINITY_DN9051_c1_g1:4330	si_s269	TRINITY_DN9051_c1_g1	4317	4339	4330	-25.70	-17.00	0.66147859922179	5	2-14,4338-4326;15-19,4323-4319	1-1,4339-4339[UP5];x-x,4325-4324[BULt];20-21,4318-4317[UP3]	..(((((..(((((((((((((.&.)))))))))))))--)))))..	UUUUAUGUUUCGAUUUUUUUGAA&CUCAAAAAAAUCGA--CAUAAUA	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s269_TRINITY_DN9051_c1_g1_4330_TPlot.pdf
TRINITY_DN9051_c1_g1:4331	si_s268	TRINITY_DN9051_c1_g1	4318	4340	4331	-26.10	-17.00	0.651340996168582	6	3-15,4338-4326;16-20,4323-4319	1-2,4340-4339[UP5];x-x,4325-4324[BULt];21-21,4318-4318[UP3]	.(((((..(((((((((((((..&..)))))))))))))--))))).	UUUAUGUUUCGAUUUUUUUGAAU&ACUCAAAAAAAUCGA--CAUAAU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s268_TRINITY_DN9051_c1_g1_4331_TPlot.pdf
TRINITY_DN9051_c1_g1:691	si_a764	TRINITY_DN9051_c1_g1	681	700	691	-28.90	-19.70	0.681660899653979	8.5	1-6,700-695;9-11,692-690;13-20,689-682	7-8,694-693[SIL];12-12,x-x[BULq];21-21,681-681[UP3]	.((((((((-(((..((((((&))))))..))).)))))))).	CUGGAUCAA-CAAUCGCCCAA&UUGGGUUUUUGAUUGAUUCAA	3	0.999967176608486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN9051_c1_g1_691_TPlot.pdf
TRINITY_DN9051_c1_g1:692	si_a763	TRINITY_DN9051_c1_g1	682	701	692	-28.80	-19.60	0.680555555555556	7.5	2-7,700-695;10-12,692-690;14-21,689-682	1-1,701-701[UP5];8-9,694-693[SIL];13-13,x-x[BULq]	((((((((-(((..((((((.&.))))))..))).))))))))	UGGAUCAA-CAAUCGCCCAAU&UUUGGGUUUUUGAUUGAUUCA	2	0.999801676684109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN9051_c1_g1_692_TPlot.pdf
TRINITY_DN9051_c1_g1:839	si_s70	TRINITY_DN9051_c1_g1	825	848	839	-25.80	-18.80	0.728682170542636	6.5	1-17,848-832;18-20,828-826	x-x,831-829[BULt];21-21,825-825[UP3]	.(((...(((((((((((((((((&)))))))))))))))))---))).	CGAAAAUAGAGAGGAAAUAGAAGU&ACUUCUAUUUUUUUUCU---UUCC	3	0.999998970121148	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9051_c1_g1_839_TPlot.pdf
TRINITY_DN9051_c1_g1:840	si_s69	TRINITY_DN9051_c1_g1	826	849	840	-23.40	-19.00	0.811965811965812	6	2-18,848-832;19-21,828-826	1-1,849-849[UP5];x-x,831-829[BULt]	(((...(((((((((((((((((.&.)))))))))))))))))---)))	GAAAAUAGAGAGGAAAUAGAAGUC&AACUUCUAUUUUUUUUCU---UUC	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9051_c1_g1_840_TPlot.pdf
TRINITY_DN9051_c1_g1:841	si_s68	TRINITY_DN9051_c1_g1	830	850	841	-23.10	-18.80	0.813852813852814	5.5	1-1,850-850;3-19,848-832	2-2,849-849[SIL];20-21,831-830[UP3]	..(((((((((((((((((.(&).)))))))))))))))))..	AUAGAGAGGAAAUAGAAGUCG&CAACUUCUAUUUUUUUUCUUU	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9051_c1_g1_841_TPlot.pdf
TRINITY_DN9051_c1_g1:842	si_s67	TRINITY_DN9051_c1_g1	831	851	842	-25.60	-18.80	0.734375	5.5	2-2,850-850;4-20,848-832	1-1,851-851[UP5];3-3,849-849[SIL];21-21,831-831[UP3]	.(((((((((((((((((.(.&.).))))))))))))))))).	UAGAGAGGAAAUAGAAGUCGG&GCAACUUCUAUUUUUUUUCUU	2	0.979669734352796	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN9051_c1_g1_842_TPlot.pdf
TRINITY_DN9051_c1_g1:843	si_s66	TRINITY_DN9051_c1_g1	832	855	843	-26.30	-19.94	0.758174904942966	9.5	1-3,855-853;5-21,848-832	4-4,852-849[AILt]	(((((((((((((((((....(((&)))---.)))))))))))))))))	AGAGAGGAAAUAGAAGUCGGGGCU&AGC---AACUUCUAUUUUUUUUCU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN9051_c1_g1_843_TPlot.pdf
TRINITY_DN9051_c1_g1:844	si_s65	TRINITY_DN9051_c1_g1	833	856	844	-26.00	-19.64	0.755384615384615	10	1-4,856-853;6-21,848-833	5-5,852-849[AILt]	((((((((((((((((....((((&))))---.))))))))))))))))	GAGAGGAAAUAGAAGUCGGGGCUG&UAGC---AACUUCUAUUUUUUUUC	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN9051_c1_g1_844_TPlot.pdf
TRINITY_DN9053_c0_g1:64	si_s805	TRINITY_DN9053_c0_g1	53	73	64	-28.60	-18.78	0.656643356643357	10	1-6,73-68;10-20,64-54	7-9,67-65[SIL];21-21,53-53[UP3]	.(((((((((((...((((((&))))))...))))))))))).	UGAAAAGGUGACAAUGGUGAA&UUUAUCUUCGUUACCUUUUCU	4	0.999999999999707	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN9053_c0_g1_64_TPlot.pdf
TRINITY_DN9054_c0_g1:509	si_a494	TRINITY_DN9054_c0_g1	498	520	509	-29.50	-19.20	0.650847457627119	14	5-8,516-513;9-21,510-498	1-4,520-517[UP5];x-x,512-511[BULt]	(((((((((((((..((((....&....))))--)))))))))))))	GGGGACGAAGAAUUGGACAGCUU&AAUAUGUC--GUUUUUCGUCUUC	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN9054_c0_g1_509_TPlot.pdf
TRINITY_DN9055_c0_g1:25	si_a789	TRINITY_DN9055_c0_g1	10	34	25	-24.80	-16.70	0.673387096774194	13	1-11,34-24;12-18,19-13	x-x,23-20[BULt];19-21,12-10[UP3]	...(((((((....(((((((((((&)))))))))))----)))))))...	AAAGGGGAAUAAAAGGAAAAAUAGA&UCUAUUUUUCU----AUUUUCCAAU	3	0.999999999733478	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN9055_c0_g1_25_TPlot.pdf
TRINITY_DN9055_c0_g1:262	si_s77	TRINITY_DN9055_c0_g1	248	271	262	-25.50	-16.70	0.654901960784314	8	1-15,271-257;16-18,253-251;20-21,249-248	x-x,256-254[BULt];19-19,250-250[SIL]	((.(((...(((((((((((((((&)))))))))))))))---))).))	GACGAGUACGGGAAAGAAAGGGAA&UUUUUUUUCUUUCCU---UUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9055_c0_g1_262_TPlot.pdf
TRINITY_DN9055_c0_g1:263	si_s76	TRINITY_DN9055_c0_g1	251	272	263	-23.60	-16.40	0.694915254237288	8	2-16,271-257;19-21,253-251	1-1,272-272[UP5];17-18,256-254[AILt]	(((...(((((((((((((((.&.)))))))))))))))-..)))	GAGUACGGGAAAGAAAGGGAAA&AUUUUUUUUCUUUCCU-UUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9055_c0_g1_263_TPlot.pdf
TRINITY_DN9055_c0_g1:264	si_s75	TRINITY_DN9055_c0_g1	250	273	264	-24.00	-16.10	0.670833333333333	11	3-17,271-257;18-20,253-251	1-2,273-272[UP5];x-x,256-254[BULt];21-21,250-250[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	CGAGUACGGGAAAGAAAGGGAAAC&UAUUUUUUUUCUUUCCU---UUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9055_c0_g1_264_TPlot.pdf
TRINITY_DN9055_c0_g1:266	si_s73	TRINITY_DN9055_c0_g1	255	275	266	-24.00	-16.10	0.670833333333333	9.5	1-2,275-274;5-19,271-257	3-4,273-272[SIL];20-21,256-255[UP3]	..(((((((((((((((..((&))..)))))))))))))))..	ACGGGAAAGAAAGGGAAACGA&UCUAUUUUUUUUCUUUCCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9055_c0_g1_266_TPlot.pdf
TRINITY_DN9055_c0_g1:267	si_s72	TRINITY_DN9055_c0_g1	256	276	267	-24.10	-16.20	0.672199170124481	9.5	2-3,275-274;6-20,271-257	1-1,276-276[UP5];4-5,273-272[SIL];21-21,256-256[UP3]	.(((((((((((((((..((.&.))..))))))))))))))).	CGGGAAAGAAAGGGAAACGAC&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9055_c0_g1_267_TPlot.pdf
TRINITY_DN9055_c0_g3:197	si_s86	TRINITY_DN9055_c0_g3	187	207	197	-32.90	-21.60	0.656534954407295	6	1-5,207-203;6-17,201-190;19-20,189-188	x-x,202-202[BULt];18-18,x-x[BULq];21-21,187-187[UP3]	.((-((((((((((((.(((((&)))))-)))))))))))).)).	UGC-AGGAAGAAGAAACGGGAG&UUUCC-UUUCUUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9055_c0_g3_197_TPlot.pdf
TRINITY_DN9055_c0_g3:201	si_s67	TRINITY_DN9055_c0_g3	190	211	201	-25.60	-17.50	0.68359375	8.5	2-9,210-203;11-21,200-190	1-1,211-211[UP5];10-10,202-201[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	AGGAAGAAGAAACGGGAGUUGG&GCAACUUCU-AUUUUUUUUCUU	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN9055_c0_g3_201_TPlot.pdf
TRINITY_DN9055_c0_g3:202	si_s69	TRINITY_DN9055_c0_g3	191	209	202	-23.40	-15.50	0.662393162393162	9	1-7,209-203;11-21,201-191	8-10,202-202[AILq]	(((((((((((.--(((((((&)))))))...)))))))))))	GGAAGAAGAAAC--GGGAGUU&AACUUCUAUUUUUUUUCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9055_c0_g3_202_TPlot.pdf
TRINITY_DN9055_c4_g1:114	si_s73	TRINITY_DN9055_c4_g1	103	124	114	-24.00	-16.40	0.683333333333333	5	1-4,124-121;5-13,119-111;15-21,109-103	x-x,120-120[BULt];14-14,110-110[SIL]	(((((((.(((((((((.((((&))))-))))))))).)))))))	AAAGGGGUGAAAGAAAAUUAGA&UCUA-UUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9055_c4_g1_114_TPlot.pdf
TRINITY_DN9055_c4_g1:132	si_a194	TRINITY_DN9055_c4_g1	121	143	132	-29.40	-19.20	0.653061224489796	11	2-7,142-137;8-17,134-125	1-1,143-143[UP5];x-x,136-135[BULt];18-21,124-121[UP3]	....((((((((((..((((((.&.))))))--))))))))))....	UAGAAUUAGUGAAUAAAGGGAGG&UUUCCCU--GUUCACUAAUAAAU	4	0.999565313134772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN9055_c4_g1_132_TPlot.pdf
TRINITY_DN9055_c4_g1:172	si_a757	TRINITY_DN9055_c4_g1	159	181	172	-33.10	-22.20	0.670694864048338	8	1-14,181-168;15-18,165-162	x-x,167-166[BULt];19-21,161-159[UP3]	...((((..((((((((((((((&))))))))))))))--))))...	CCACGAACUAGCUCAAAGGGGGU&ACCUCCUUUGGGUU--UUUGAUU	3	0.999999760239991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN9055_c4_g1_172_TPlot.pdf
TRINITY_DN9055_c4_g1:173	si_a756	TRINITY_DN9055_c4_g1	160	182	173	-33.10	-22.50	0.6797583081571	8	2-15,181-168;16-19,165-162	1-1,182-182[UP5];x-x,167-166[BULt];20-21,161-160[UP3]	..((((..((((((((((((((.&.))))))))))))))--))))..	CACGAACUAGCUCAAAGGGGGUG&AACCUCCUUUGGGUU--UUUGAU	0	0.265219138193816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN9055_c4_g1_173_TPlot.pdf
TRINITY_DN9058_c0_g1:101	si_a499	TRINITY_DN9058_c0_g1	87	110	101	-35.20	-24.60	0.698863636363636	8.5	1-14,110-97;15-17,93-91;19-21,89-87	x-x,96-94[BULt];18-18,90-90[SIL]	(((.(((...((((((((((((((&))))))))))))))---))).)))	UCAUGGAAUCAGACGAAGGGCGGC&GUCGUUUUUCGUCU---UCCUUGG	3	0.999965121416055	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN9058_c0_g1_101_TPlot.pdf
TRINITY_DN9058_c0_g1:102	si_a498	TRINITY_DN9058_c0_g1	88	111	102	-33.50	-24.50	0.73134328358209	8	1-15,111-97;16-18,93-91;20-21,89-88	x-x,96-94[BULt];19-19,90-90[SIL]	((.(((...(((((((((((((((&)))))))))))))))---))).))	CAUGGAAUCAGACGAAGGGCGGCA&UGUCGUUUUUCGUCU---UCCUUG	3	0.995320776871518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9058_c0_g1_102_TPlot.pdf
TRINITY_DN9058_c0_g1:103	si_a497	TRINITY_DN9058_c0_g1	89	112	103	-32.00	-23.90	0.746875	10	2-16,111-97;17-19,93-91	1-1,112-112[UP5];x-x,96-94[BULt];20-21,90-89[UP3]	..(((...(((((((((((((((.&.)))))))))))))))---)))..	AUGGAAUCAGACGAAGGGCGGCAA&AUGUCGUUUUUCGUCU---UCCUU	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN9058_c0_g1_103_TPlot.pdf
TRINITY_DN9058_c0_g1:104	si_a496	TRINITY_DN9058_c0_g1	90	113	104	-32.40	-23.90	0.737654320987654	11	3-17,111-97;18-20,93-91	1-2,113-112[UP5];x-x,96-94[BULt];21-21,90-90[UP3]	.(((...(((((((((((((((..&..)))))))))))))))---))).	UGGAAUCAGACGAAGGGCGGCAAC&UAUGUCGUUUUUCGUCU---UCCU	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN9058_c0_g1_104_TPlot.pdf
TRINITY_DN9058_c0_g1:105	si_a495	TRINITY_DN9058_c0_g1	91	114	105	-31.90	-23.50	0.736677115987461	12	4-18,111-97;19-21,93-91	1-3,114-112[UP5];x-x,96-94[BULt]	(((...(((((((((((((((...&...)))))))))))))))---)))	GGAAUCAGACGAAGGGCGGCAACG&AUAUGUCGUUUUUCGUCU---UCC	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN9058_c0_g1_105_TPlot.pdf
TRINITY_DN9058_c0_g1:106	si_a494	TRINITY_DN9058_c0_g1	95	115	106	-29.50	-21.30	0.722033898305085	13	5-19,111-97	1-4,115-112[UP5];20-21,96-95[UP3]	..(((((((((((((((....&....)))))))))))))))..	UCAGACGAAGGGCGGCAACGA&AAUAUGUCGUUUUUCGUCUUC	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN9058_c0_g1_106_TPlot.pdf
TRINITY_DN9058_c0_g1:107	si_a493	TRINITY_DN9058_c0_g1	96	116	107	-29.50	-21.30	0.722033898305085	13.5	6-20,111-97	1-5,116-112[UP5];21-21,96-96[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAGACGAAGGGCGGCAACGAC&GAAUAUGUCGUUUUUCGUCUU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a493_TRINITY_DN9058_c0_g1_107_TPlot.pdf
TRINITY_DN9058_c0_g1:108	si_a492	TRINITY_DN9058_c0_g1	97	117	108	-30.20	-21.30	0.705298013245033	14	7-21,111-97	1-6,117-112[UP5]	(((((((((((((((......&......)))))))))))))))	AGACGAAGGGCGGCAACGACU&AGAAUAUGUCGUUUUUCGUCU	2	0.780944500216369	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN9058_c0_g1_108_TPlot.pdf
TRINITY_DN9058_c0_g1:109	si_a491	TRINITY_DN9058_c0_g1	98	118	109	-29.90	-20.16	0.674247491638796	10.5	1-3,118-116;8-21,111-98	4-7,115-112[SIL]	((((((((((((((....(((&)))....))))))))))))))	GACGAAGGGCGGCAACGACUA&UAGAAUAUGUCGUUUUUCGUC	3	0.991235654962385	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN9058_c0_g1_109_TPlot.pdf
TRINITY_DN9058_c0_g1:98	si_a502	TRINITY_DN9058_c0_g1	84	107	98	-32.10	-21.70	0.67601246105919	11	1-11,107-97;12-14,93-91;16-21,89-84	x-x,96-94[BULt];15-15,90-90[SIL]	((((((.(((...(((((((((((&)))))))))))---))).))))))	GUUUCAUGGAAUCAGACGAAGGGC&GUUUUUCGUCU---UCCUUGGAAU	3	0.999999998855167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN9058_c0_g1_98_TPlot.pdf
TRINITY_DN9058_c0_g1:99	si_a501	TRINITY_DN9058_c0_g1	85	108	99	-33.50	-22.80	0.680597014925373	10.5	1-12,108-97;13-15,93-91;17-21,89-85	x-x,96-94[BULt];16-16,90-90[SIL]	(((((.(((...((((((((((((&))))))))))))---))).)))))	UUUCAUGGAAUCAGACGAAGGGCG&CGUUUUUCGUCU---UCCUUGGAA	3	0.99999963322098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN9058_c0_g1_99_TPlot.pdf
TRINITY_DN905_c1_g1:99	si_a126	TRINITY_DN905_c1_g1	88	108	99	-24.70	-16.50	0.668016194331984	4	2-13,107-96;15-21,94-88	1-1,108-108[UP5];14-14,95-95[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UAAUUACAAUUGUUAUGAAAA&GUUUUAUAGCAAUAGUAAUUA	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a126_TRINITY_DN905_c1_g1_99_TPlot.pdf
TRINITY_DN9067_c0_g1:1891	si_s84	TRINITY_DN9067_c0_g1	1875	1900	1891	-32.30	-21.60	0.668730650154799	12	1-8,1900-1893;11-15,1890-1886;16-21,1880-1875	9-10,1892-1891[SIL];x-x,1885-1881[BULt]	((((((.....(((((..((((((((&))))))))..)))))-----))))))	CGAGGAAGCCUGGAAGCUGGGAAGGA&UCUUUCCUUUCUUCU-----UCUUCG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN9067_c0_g1_1891_TPlot.pdf
TRINITY_DN906_c0_g1:464	si_s82	TRINITY_DN906_c0_g1	451	473	464	-28.90	-19.88	0.687889273356401	5.5	1-15,473-459;18-21,454-451	16-17,458-455[AILt]	((((....(((((((((((((((&)))))))))))))))--..))))	AAGAUAAAAAGAAGGGAAAGAAG&UUUCUUUCCUUUCUU--CUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN906_c0_g1_464_TPlot.pdf
TRINITY_DN906_c0_g1:465	si_s81	TRINITY_DN906_c0_g1	452	474	465	-28.90	-19.58	0.677508650519031	6.5	1-16,474-459;19-21,454-452	17-18,458-455[AILt]	(((....((((((((((((((((&))))))))))))))))--..)))	AGAUAAAAAGAAGGGAAAGAAGG&UUUUCUUUCCUUUCUU--CUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN906_c0_g1_465_TPlot.pdf
TRINITY_DN906_c0_g1:466	si_s80	TRINITY_DN906_c0_g1	455	475	466	-28.20	-19.70	0.698581560283688	7.5	1-17,475-459	18-21,458-455[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAAAAAGAAGGGAAAGAAGGG&UUUUUCUUUCCUUUCUUCUUC	2	0.999999999999907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN906_c0_g1_466_TPlot.pdf
TRINITY_DN906_c0_g1:469	si_s77	TRINITY_DN906_c0_g1	458	478	469	-25.50	-19.80	0.776470588235294	9.5	4-20,475-459	1-3,478-476[UP5];21-21,458-458[UP3]	.(((((((((((((((((...&...))))))))))))))))).	AAAGAAGGGAAAGAAGGGCGA&UUUUUUUUCUUUCCUUUCUUC	3	0.999999982395045	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN906_c0_g1_469_TPlot.pdf
TRINITY_DN906_c0_g1:470	si_s76	TRINITY_DN906_c0_g1	459	479	470	-23.60	-20.10	0.851694915254237	6.5	1-3,479-477;5-21,475-459	4-4,476-476[SIL]	(((((((((((((((((.(((&))).)))))))))))))))))	AAGAAGGGAAAGAAGGGCGAU&AUUUUUUUUCUUUCCUUUCUU	3	0.99700253433103	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN906_c0_g1_470_TPlot.pdf
TRINITY_DN906_c0_g1:471	si_s75	TRINITY_DN906_c0_g1	460	480	471	-24.00	-19.20	0.8	7.5	2-4,479-477;6-21,475-460	1-1,480-480[UP5];5-5,476-476[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	AGAAGGGAAAGAAGGGCGAUU&UAUUUUUUUUCUUUCCUUUCU	3	0.999895932315747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN906_c0_g1_471_TPlot.pdf
TRINITY_DN906_c0_g1:472	si_s74	TRINITY_DN906_c0_g1	461	481	472	-25.00	-17.90	0.716	9.5	3-5,479-477;7-21,475-461	1-2,481-480[UP5];6-6,476-476[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GAAGGGAAAGAAGGGCGAUUC&CUAUUUUUUUUCUUUCCUUUC	4	0.999999999992192	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN906_c0_g1_472_TPlot.pdf
TRINITY_DN906_c0_g1:488	si_a503	TRINITY_DN906_c0_g1	477	497	488	-32.10	-26.50	0.825545171339564	4	1-20,497-478	21-21,477-477[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GAUUCUGAGGAAGAUGAAGAA&UUUUUCGUCUUCCUUGGAAUG	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN906_c0_g1_488_TPlot.pdf
TRINITY_DN906_c0_g1:489	si_a502	TRINITY_DN906_c0_g1	478	498	489	-32.10	-26.00	0.809968847352025	4	2-21,497-478	1-1,498-498[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	AUUCUGAGGAAGAUGAAGAAG&GUUUUUCGUCUUCCUUGGAAU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN906_c0_g1_489_TPlot.pdf
TRINITY_DN906_c0_g1:490	si_a501	TRINITY_DN906_c0_g1	479	499	490	-33.50	-24.80	0.740298507462687	6	3-21,497-479	1-2,499-498[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	UUCUGAGGAAGAUGAAGAAGA&CGUUUUUCGUCUUCCUUGGAA	4	0.967503783081589	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN906_c0_g1_490_TPlot.pdf
TRINITY_DN906_c0_g1:506	si_s68	TRINITY_DN906_c0_g1	495	515	506	-23.10	-15.50	0.670995670995671	9.5	1-1,515-515;4-8,512-508;10-21,506-495	2-3,514-513[SIL];9-9,507-507[SIL]	((((((((((((.(((((..(&)..))))).))))))))))))	GAAGAGGAAGAAGAGGAGGAG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN906_c0_g1_506_TPlot.pdf
TRINITY_DN906_c0_g1:507	si_s88	TRINITY_DN906_c0_g1	495	517	507	-34.80	-26.00	0.747126436781609	6	1-5,517-513;6-16,511-501;18-21,498-495	x-x,512-512[BULt];17-17,500-499[AILt]	((((..(((((((((((.(((((&)))))-)))))))))))-.))))	GAAGAGGAAGAAGAGGAGGAGGA&UCCUU-UCUUCUUCUUC-GCUUC	3	0.997121470905765	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN906_c0_g1_507_TPlot.pdf
TRINITY_DN906_c0_g1:513	si_s80	TRINITY_DN906_c0_g1	501	523	513	-28.20	-22.10	0.783687943262411	6.5	1-8,523-516;9-13,514-510;14-21,508-501	x-x,515-515[BULt];x-x,509-509[BULt]	((((((((.(((((.((((((((&))))))))-)))))-))))))))	GAAGAAGAGGAGGAGGAGGAAGA&UUUUUCUU-UCCUU-UCUUCUUC	3	0.99998247581855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN906_c0_g1_513_TPlot.pdf
TRINITY_DN906_c0_g1:514	si_s89	TRINITY_DN906_c0_g1	503	523	514	-35.30	-24.80	0.702549575070822	6.5	2-15,522-509;17-20,507-504	1-1,523-523[UP5];16-16,508-508[SIL];21-21,503-503[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AGAAGAGGAGGAGGAGGAAGA&CCUUUCUUCUUCUUCGCUUCG	4	0.99999952162128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN906_c0_g1_514_TPlot.pdf
TRINITY_DN906_c0_g1:715	si_s83	TRINITY_DN906_c0_g1	704	725	715	-30.90	-21.30	0.689320388349515	8	1-4,725-722;7-20,718-705	5-6,721-719[AILt];21-21,704-704[UP3]	.((((((((((((((...((((&))))-..)))))))))))))).	CAAGAAGAAGAAGGGCUCAGAA&UUCU-UUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN906_c0_g1_715_TPlot.pdf
TRINITY_DN906_c0_g1:718	si_s80	TRINITY_DN906_c0_g1	707	728	718	-28.20	-19.40	0.687943262411348	12	4-7,725-722;10-21,718-707	1-3,728-726[UP5];8-9,721-719[AILt]	((((((((((((...((((...&...))))-..))))))))))))	GAAGAAGAAGGGCUCAGAAUCU&UUUUUCU-UUCCUUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN906_c0_g1_718_TPlot.pdf
TRINITY_DN906_c1_g1:1118	si_a68	TRINITY_DN906_c1_g1	1108	1125	1118	-25.40	-17.10	0.673228346456693	10	1-8,1125-1118;12-20,1117-1109	9-11,x-x[BULq];21-21,1108-1108[UP3]	.(((((((((---((((((((&))))))))...))))))))).	AGAGAGACAA---GGAAGAGG&CUUCUUUCAAAUUGUUUUUCA	4	0.999999999960934	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN906_c1_g1_1118_TPlot.pdf
TRINITY_DN906_c1_g1:727	si_a171	TRINITY_DN906_c1_g1	716	736	727	-32.10	-22.40	0.697819314641745	11.5	3-15,734-722	1-2,736-735[UP5];16-21,721-716[UP3]	......(((((((((((((..&..)))))))))))))......	CCGCCGCUGGACGGGUGGGGU&UAUUCACCCGUCUAGAUAAUA	2	0.661359074050212	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a171_TRINITY_DN906_c1_g1_727_TPlot.pdf
TRINITY_DN906_c1_g1:730	si_a168	TRINITY_DN906_c1_g1	719	739	730	-34.40	-22.40	0.651162790697674	14.5	6-18,734-722	1-5,739-735[UP5];19-21,721-719[UP3]	...(((((((((((((.....&.....)))))))))))))...	CCGCUGGACGGGUGGGGUGCU&AUCUAUUCACCCGUCUAGAUA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a168_TRINITY_DN906_c1_g1_730_TPlot.pdf
TRINITY_DN9071_c1_g1:538	si_s63	TRINITY_DN9071_c1_g1	527	556	538	-25.80	-17.30	0.670542635658915	21.5	1-5,556-552;6-21,542-527	x-x,551-543[BULt]	((((((((((((((((.........(((((&)))))---------))))))))))))))))	GGGGAAAUGGAAGUUGAAAUAAAUCCUGAC&GUUAG---------CAACUUCUAUUUUUUU	2	0.99965277419438	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s63_TRINITY_DN9071_c1_g1_538_TPlot.pdf
TRINITY_DN9072_c0_g1:2258	si_a189	TRINITY_DN9072_c0_g1	2243	2267	2258	-32.10	-23.50	0.73208722741433	13	2-12,2266-2256;13-20,2251-2244	1-1,2267-2267[UP5];x-x,2255-2252[BULt];21-21,2243-2243[UP3]	.((((((((....(((((((((((.&.)))))))))))----)))))))).	GUGGUGGACUCGGAGGGAAAGGUGC&AUAUCUUUCCCU----GUUCACUAA	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a189_TRINITY_DN9072_c0_g1_2258_TPlot.pdf
TRINITY_DN9072_c0_g1:2260	si_a187	TRINITY_DN9072_c0_g1	2245	2269	2260	-32.00	-22.20	0.69375	12	4-14,2266-2256;15-21,2251-2245	1-3,2269-2267[UP5];x-x,2255-2252[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	GGUGGACUCGGAGGGAAAGGUGCAC&UAAUAUCUUUCCCU----GUUCACU	3	0.969252423547776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a187_TRINITY_DN9072_c0_g1_2260_TPlot.pdf
TRINITY_DN9072_c0_g1:2261	si_a186	TRINITY_DN9072_c0_g1	2246	2270	2261	-31.50	-21.10	0.66984126984127	13.5	5-15,2266-2256;16-21,2251-2246	1-4,2270-2267[UP5];x-x,2255-2252[BULt]	((((((....(((((((((((....&....)))))))))))----))))))	GUGGACUCGGAGGGAAAGGUGCACG&AUAAUAUCUUUCCCU----GUUCAC	4	0.992338877235817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN9072_c0_g1_2261_TPlot.pdf
TRINITY_DN9072_c0_g1:2280	si_a322	TRINITY_DN9072_c0_g1	2269	2289	2280	-27.00	-19.80	0.733333333333333	7.5	1-4,2289-2286;6-20,2284-2270	5-5,2285-2285[SIL];21-21,2269-2269[UP3]	.(((((((((((((((.((((&)))).))))))))))))))).	CGGAAUAAGAGGAUUGAGGAU&AUCCAUGAUUUUUUUAUUCCU	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9072_c0_g1_2280_TPlot.pdf
TRINITY_DN9072_c0_g1:2282	si_a320	TRINITY_DN9072_c0_g1	2271	2291	2282	-24.40	-16.10	0.659836065573771	9	3-6,2289-2286;8-21,2284-2271	1-2,2291-2290[UP5];7-7,2285-2285[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GAAUAAGAGGAUUGAGGAUUG&UUAUCCAUGAUUUUUUUAUUC	2	0.999981821528095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN9072_c0_g1_2282_TPlot.pdf
TRINITY_DN9073_c0_g1:788	si_a763	TRINITY_DN9073_c0_g1	779	797	788	-28.80	-19.20	0.666666666666667	5	2-15,796-783;18-20,782-780	1-1,797-797[UP5];16-17,x-x[BULq];21-21,779-779[UP3]	.(((--((((((((((((((.&.))))))))))))))..))).	CGAA--AAUCAGAAACCCAAU&UUUGGGUUUUUGAUUGAUUCA	2	0.999990601104866	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN9073_c0_g1_788_TPlot.pdf
TRINITY_DN9073_c0_g2:1896	si_a412	TRINITY_DN9073_c0_g2	1886	1905	1896	-18.30	-11.90	0.650273224043716	4	1-12,1905-1894;15-20,1892-1887	13-14,1893-1893[AILq];21-21,1886-1886[UP3]	.((((((.-((((((((((((&))))))))))))..)))))).	AAUUUAUA-AAAUAUAAGCAA&UUGUUUAUAUUUAAAUAAAUA	3	0.999999990973786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN9073_c0_g2_1896_TPlot.pdf
TRINITY_DN9073_c0_g2:1897	si_a411	TRINITY_DN9073_c0_g2	1887	1906	1897	-17.90	-12.50	0.698324022346369	3	1-13,1906-1894;16-21,1892-1887	14-15,1893-1893[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	AUUUAUA-AAAUAUAAGCAAA&UUUGUUUAUAUUUAAAUAAAU	4	0.99998497190574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN9073_c0_g2_1897_TPlot.pdf
TRINITY_DN9073_c0_g2:1898	si_a410	TRINITY_DN9073_c0_g2	1888	1907	1898	-17.80	-12.00	0.674157303370786	3	1-14,1907-1894;17-21,1892-1888	15-16,1893-1893[AILq]	(((((.-((((((((((((((&))))))))))))))..)))))	UUUAUA-AAAUAUAAGCAAAA&UUUUGUUUAUAUUUAAAUAAA	3	0.999999999998753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9073_c0_g2_1898_TPlot.pdf
TRINITY_DN9073_c0_g2:1899	si_a409	TRINITY_DN9073_c0_g2	1888	1908	1899	-19.50	-15.40	0.78974358974359	7	1-15,1908-1894	16-21,1893-1888[UP3]	......(((((((((((((((&)))))))))))))))......	UUUAUAAAAUAUAAGCAAAAC&GUUUUGUUUAUAUUUAAAUAA	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN9073_c0_g2_1899_TPlot.pdf
TRINITY_DN9073_c0_g2:1904	si_a404	TRINITY_DN9073_c0_g2	1893	1913	1904	-21.70	-17.10	0.788018433179724	4.5	1-3,1913-1911;5-20,1909-1894	4-4,1910-1910[SIL];21-21,1893-1893[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	AAAAUAUAAGCAAAACAUUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN9073_c0_g2_1904_TPlot.pdf
TRINITY_DN9075_c0_g1:141	si_s192	TRINITY_DN9075_c0_g1	130	150	141	-28.00	-19.20	0.685714285714286	5.5	1-17,150-134	18-21,133-130[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAUAGUUCCAAAAUAAUUGUU&AACGAUUAUUUUGGAAUGUAC	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s192_TRINITY_DN9075_c0_g1_141_TPlot.pdf
TRINITY_DN9075_c0_g1:144	si_s189	TRINITY_DN9075_c0_g1	133	153	144	-27.90	-20.00	0.716845878136201	6.5	3-20,151-134	1-2,153-152[UP5];21-21,133-133[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGUUCCAAAAUAAUUGUUGUA&AGUAACGAUUAUUUUGGAAUG	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN9075_c0_g1_144_TPlot.pdf
TRINITY_DN9075_c0_g1:146	si_s187	TRINITY_DN9075_c0_g1	135	157	146	-29.60	-20.00	0.675675675675676	7	1-6,157-152;7-21,149-135	x-x,151-150[BULt]	(((((((((((((((..((((((&))))))--)))))))))))))))	UUCCAAAAUAAUUGUUGUAUUUG&CGAGUA--ACGAUUAUUUUGGAA	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s187_TRINITY_DN9075_c0_g1_146_TPlot.pdf
TRINITY_DN9076_c1_g1:286	si_s79	TRINITY_DN9076_c1_g1	273	295	286	-26.20	-22.20	0.847328244274809	5	1-13,295-283;14-21,280-273	x-x,282-281[BULt]	((((((((..(((((((((((((&)))))))))))))--))))))))	AGGAAGAACAGGGAAAGGAAAGA&UUUUUUCUUUCCU--UUCUUCUU	3	0.987883192143143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9076_c1_g1_286_TPlot.pdf
TRINITY_DN9076_c1_g1:288	si_a185	TRINITY_DN9076_c1_g1	277	297	288	-31.70	-21.50	0.678233438485804	16	9-20,289-278	1-8,297-290[UP5];21-21,277-277[UP3]	.((((((((((((........&........)))))))))))).	AGAACAGGGAAAGGAAAGAGC&GAUAAUAUCUUUCCCUGUUCA	3	0.947952770594843	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a185_TRINITY_DN9076_c1_g1_288_TPlot.pdf
TRINITY_DN9076_c1_g1:313	si_s78	TRINITY_DN9076_c1_g1	301	322	313	-26.20	-19.20	0.732824427480916	7.5	1-16,322-307;17-19,305-303	x-x,306-306[BULt];20-21,302-301[UP3]	..(((.((((((((((((((((&))))))))))))))))-)))..	UCAAGCAGAGGAGAGAGGAGAA&UUUUUUUCUUUCCUUU-CUUCU	3	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9076_c1_g1_313_TPlot.pdf
TRINITY_DN9076_c1_g1:316	si_s75	TRINITY_DN9076_c1_g1	304	325	316	-24.00	-18.80	0.783333333333333	9	3-19,323-307;20-21,305-304	1-2,325-324[UP5];x-x,306-306[BULt]	((.(((((((((((((((((..&..)))))))))))))))))-))	AGCAGAGGAGAGAGGAGAAGCG&UAUUUUUUUUCUUUCCUUU-CU	3	0.999994006610643	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9076_c1_g1_316_TPlot.pdf
TRINITY_DN9076_c1_g1:317	si_s74	TRINITY_DN9076_c1_g1	306	326	317	-25.00	-18.00	0.72	11	4-20,323-307	1-3,326-324[UP5];21-21,306-306[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CAGAGGAGAGAGGAGAAGCGA&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999929939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9076_c1_g1_317_TPlot.pdf
TRINITY_DN9076_c1_g1:320	si_a497	TRINITY_DN9076_c1_g1	308	329	320	-32.00	-21.40	0.66875	9.5	4-12,326-318;14-16,316-314;17-21,312-308	1-3,329-327[UP5];13-13,317-317[SIL];x-x,313-313[BULt]	(((((.(((.(((((((((...&...))))))))).)))-)))))	GAGGAGAGAGGAGAAGCGAAUU&AUGUCGUUUUUCGUCU-UCCUU	3	0.999999999999997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN9076_c1_g1_320_TPlot.pdf
TRINITY_DN9078_c0_g1:237	si_a637	TRINITY_DN9078_c0_g1	226	250	237	-25.80	-17.50	0.678294573643411	11	1-9,250-242;10-13,237-234;15-21,232-226	x-x,241-238[BULt];14-14,233-233[SIL]	(((((((.((((....(((((((((&)))))))))----)))).)))))))	AUAUUACCCAAAAAUCGAGAUCGAC&GUCGAUUUU----UUUGAGUAAUAU	4	0.99999952162128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN9078_c0_g1_237_TPlot.pdf
TRINITY_DN9078_c0_g1:292	si_s694	TRINITY_DN9078_c0_g1	281	301	292	-23.90	-15.90	0.665271966527197	11.5	5-17,297-285	1-4,301-298[UP5];18-21,284-281[UP3]	....(((((((((((((....&....)))))))))))))....	AAGUUGAAUCGACUAAUGUAA&UUUAAUUAGUCGAUUUAUUAG	4	0.997035791548868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s694_TRINITY_DN9078_c0_g1_292_TPlot.pdf
TRINITY_DN9079_c0_g1:244	si_a186	TRINITY_DN9079_c0_g1	233	253	244	-31.50	-22.60	0.717460317460317	9	4-18,250-236	1-3,253-251[UP5];19-21,235-233[UP3]	...(((((((((((((((...&...)))))))))))))))...	UUUAACAGGGAGAGAUAUAGA&AUAAUAUCUUUCCCUGUUCAC	4	0.834019544512595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a186_TRINITY_DN9079_c0_g1_244_TPlot.pdf
TRINITY_DN9079_c0_g1:246	si_a184	TRINITY_DN9079_c0_g1	235	255	246	-31.70	-22.60	0.712933753943218	11	6-20,250-236	1-5,255-251[UP5];21-21,235-235[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UAACAGGGAGAGAUAUAGAUA&AGAUAAUAUCUUUCCCUGUUC	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a184_TRINITY_DN9079_c0_g1_246_TPlot.pdf
TRINITY_DN9079_c0_g1:247	si_a183	TRINITY_DN9079_c0_g1	236	256	247	-30.10	-22.60	0.750830564784053	11.5	7-21,250-236	1-6,256-251[UP5]	(((((((((((((((......&......)))))))))))))))	AACAGGGAGAGAUAUAGAUAC&UAGAUAAUAUCUUUCCCUGUU	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN9079_c0_g1_247_TPlot.pdf
TRINITY_DN9083_c0_g3:1259	si_s75	TRINITY_DN9083_c0_g3	1247	1268	1259	-24.00	-15.90	0.6625	14	7-16,1262-1253;17-21,1251-1247	1-6,1268-1263[UP5];x-x,1252-1252[BULt]	(((((.((((((((((......&......))))))))))-)))))	GGAAAUGGAGAGAAGAUGACAU&UAUUUUUUUUCUUUCC-UUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9083_c0_g3_1259_TPlot.pdf
TRINITY_DN9084_c0_g1:1090	si_s32	TRINITY_DN9084_c0_g1	1079	1099	1090	-24.80	-18.80	0.758064516129032	6	1-4,1099-1096;6-19,1094-1081	5-5,1095-1095[SIL];20-21,1080-1079[UP3]	..((((((((((((((.((((&)))).))))))))))))))..	UAUAUUAGGGGUUUAGAUGCA&UGCAACUAAAUCUUUAAUAAU	4	0.338236594608727	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s32_TRINITY_DN9084_c0_g1_1090_TPlot.pdf
TRINITY_DN9087_c0_g1:2036	si_a785	TRINITY_DN9087_c0_g1	2025	2048	2036	-25.90	-17.52	0.676447876447877	12.5	1-6,2048-2043;9-21,2037-2025	7-8,2042-2038[AILt]	(((((((((((((.....((((((&))))))---..)))))))))))))	GAAGGUGGAAAGAAAGUCGAAGAG&CUCUUC---UAUUUUUCUAUUUUC	2	0.999999995967459	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9087_c0_g1_2036_TPlot.pdf
TRINITY_DN9087_c0_g1:566	si_s627	TRINITY_DN9087_c0_g1	555	575	566	-36.10	-30.50	0.844875346260388	5	1-18,575-558	19-21,557-555[UP3]	...((((((((((((((((((&))))))))))))))))))...	CCGGCCUACGAAAGGAUCGUU&AGCGAUCUUUUCGUAGGCGUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN9087_c0_g1_566_TPlot.pdf
TRINITY_DN9087_c0_g1:567	si_s626	TRINITY_DN9087_c0_g1	556	576	567	-36.10	-30.70	0.850415512465374	5	2-19,575-558	1-1,576-576[UP5];20-21,557-556[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CGGCCUACGAAAGGAUCGUUC&AAGCGAUCUUUUCGUAGGCGU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN9087_c0_g1_567_TPlot.pdf
TRINITY_DN9087_c0_g1:922	si_s77	TRINITY_DN9087_c0_g1	911	934	922	-25.50	-17.30	0.67843137254902	12	1-9,934-926;10-20,922-912	x-x,925-923[BULt];21-21,911-911[UP3]	.(((((((((((...(((((((((&)))))))))---))))))))))).	CGGGAAAGGAGACAUGGAAAGAGA&UUUUUUUUC---UUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9087_c0_g1_922_TPlot.pdf
TRINITY_DN9087_c0_g1:983	si_s630	TRINITY_DN9087_c0_g1	966	992	983	-35.60	-24.14	0.678089887640449	13.5	1-10,992-983;12-15,978-975;16-21,971-966	11-11,982-979[AILt];x-x,974-972[BULt]	((((((...((((....((((((((((&))))))))))---.))))---))))))	GCAGACGAGGCCUUUGCCGAGAAGGUC&GAUCUUUUCG---UAGGC---GUUUGC	2	0.967375473570708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s630_TRINITY_DN9087_c0_g1_983_TPlot.pdf
TRINITY_DN9087_c0_g1:986	si_s627	TRINITY_DN9087_c0_g1	972	995	986	-36.10	-23.84	0.660387811634349	8.5	1-13,995-983;15-18,978-975;20-21,973-972	14-14,982-979[AILt];19-19,974-974[SIL]	((.((((....(((((((((((((&)))))))))))))---.)))).))	GAGGCCUUUGCCGAGAAGGUCGUU&AGCGAUCUUUUCG---UAGGCGUU	4	0.999895383304807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN9087_c0_g1_986_TPlot.pdf
TRINITY_DN9091_c1_g1:28	si_s491	TRINITY_DN9091_c1_g1	17	37	28	-19.50	-13.10	0.671794871794872	10	6-20,32-18	1-5,37-33[UP5];21-21,17-17[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUUUUGUUUAUAUUUAUGGUU&UUAUUUAAAUAUAAACAAAAC	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN9091_c1_g1_28_TPlot.pdf
TRINITY_DN9097_c0_g1:777	si_a67	TRINITY_DN9097_c0_g1	767	786	777	-27.20	-17.80	0.654411764705882	6	1-11,786-776;13-18,775-770	12-12,x-x[BULq];19-21,769-767[UP3]	...((((((-(((((((((((&))))))))))).))))))...	UUCAAGCAA-UUGAAAGAAGU&GCUUCUUUCAAAUUGUUUUUC	3	0.999999999999957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN9097_c0_g1_777_TPlot.pdf
TRINITY_DN9098_c0_g1:151	si_a226	TRINITY_DN9098_c0_g1	139	160	151	-27.60	-18.30	0.66304347826087	8.5	2-14,159-147;17-19,143-141	1-1,160-160[UP5];15-16,146-144[AILt];20-21,140-139[UP3]	..(((...(((((((((((((.&.)))))))))))))-..)))..	GCUGAAAAGUGGAAACGUGAGA&ACUCAUGUUUCUAU-AAUCAAU	3	0.961583246702078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a226_TRINITY_DN9098_c0_g1_151_TPlot.pdf
TRINITY_DN9098_c0_g1:152	si_a225	TRINITY_DN9098_c0_g1	140	161	152	-27.50	-18.30	0.665454545454546	9	3-15,159-147;18-20,143-141	1-2,161-160[UP5];16-17,146-144[AILt];21-21,140-140[UP3]	.(((...(((((((((((((..&..)))))))))))))-..))).	CUGAAAAGUGGAAACGUGAGAA&AACUCAUGUUUCUAU-AAUCAA	3	0.967981979058631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN9098_c0_g1_152_TPlot.pdf
TRINITY_DN9098_c0_g1:153	si_a224	TRINITY_DN9098_c0_g1	141	162	153	-27.40	-18.00	0.656934306569343	10	4-16,159-147;19-21,143-141	1-3,162-160[UP5];17-18,146-144[AILt]	(((...(((((((((((((...&...)))))))))))))-..)))	UGAAAAGUGGAAACGUGAGAAU&AAACUCAUGUUUCUAU-AAUCA	3	0.984551376577153	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN9098_c0_g1_153_TPlot.pdf
TRINITY_DN9098_c0_g1:154	si_a223	TRINITY_DN9098_c0_g1	143	163	154	-27.10	-17.80	0.656826568265683	13	5-17,159-147	1-4,163-160[UP5];18-21,146-143[UP3]	....(((((((((((((....&....)))))))))))))....	AAAAGUGGAAACGUGAGAAUA&UAAACUCAUGUUUCUAUAAUC	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN9098_c0_g1_154_TPlot.pdf
TRINITY_DN9098_c0_g1:1616	si_s78	TRINITY_DN9098_c0_g1	1604	1625	1616	-26.20	-17.70	0.675572519083969	9	1-12,1625-1614;13-18,1612-1607	x-x,1613-1613[BULt];19-21,1606-1604[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UUCAGAAAGAGGAGGAGAAAGA&UUUUUUUCUUUC-CUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9098_c0_g1_1616_TPlot.pdf
TRINITY_DN9098_c0_g1:1617	si_s77	TRINITY_DN9098_c0_g1	1605	1626	1617	-25.50	-18.10	0.709803921568627	7.5	1-13,1626-1614;14-19,1612-1607	x-x,1613-1613[BULt];20-21,1606-1605[UP3]	..((((((.(((((((((((((&)))))))))))))-))))))..	UCAGAAAGAGGAGGAGAAAGAG&UUUUUUUUCUUUC-CUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9098_c0_g1_1617_TPlot.pdf
TRINITY_DN9098_c0_g1:1618	si_s76	TRINITY_DN9098_c0_g1	1606	1627	1618	-23.60	-18.10	0.766949152542373	7.5	2-14,1626-1614;15-20,1612-1607	1-1,1627-1627[UP5];x-x,1613-1613[BULt];21-21,1606-1606[UP3]	.((((((.(((((((((((((.&.)))))))))))))-)))))).	CAGAAAGAGGAGGAGAAAGAGG&AUUUUUUUUCUUUC-CUUUCUU	3	0.999999999999467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9098_c0_g1_1618_TPlot.pdf
TRINITY_DN9098_c0_g1:1619	si_s75	TRINITY_DN9098_c0_g1	1607	1628	1619	-24.00	-18.10	0.754166666666667	8.5	3-15,1626-1614;16-21,1612-1607	1-2,1628-1627[UP5];x-x,1613-1613[BULt]	((((((.(((((((((((((..&..)))))))))))))-))))))	AGAAAGAGGAGGAGAAAGAGGA&UAUUUUUUUUCUUUC-CUUUCU	3	0.999999999616306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9098_c0_g1_1619_TPlot.pdf
TRINITY_DN9098_c0_g1:1622	si_a327	TRINITY_DN9098_c0_g1	1611	1631	1622	-28.40	-18.90	0.665492957746479	8.5	1-10,1631-1622;12-17,1620-1615;19-20,1613-1612	11-11,1621-1621[SIL];18-18,1614-1614[SIL];21-21,1611-1611[UP3]	.((.((((((.((((((((((&)))))))))).)))))).)).	AGAGGAGGAGAAAGAGGAUCA&UGAUUUUUUUAUUCCUUGUCC	2	0.999966548409822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN9098_c0_g1_1622_TPlot.pdf
TRINITY_DN9098_c0_g1:1625	si_s71	TRINITY_DN9098_c0_g1	1613	1641	1625	-25.70	-16.80	0.653696498054475	18.5	1-5,1641-1637;6-17,1629-1618;18-21,1616-1613	x-x,1636-1630[BULt];x-x,1617-1617[BULt]	((((.((((((((((((.......(((((&)))))-------))))))))))))-))))	AGGAGGAGAAAGAGGAUCAGGAACAGAAG&CUUCU-------AUUUUUUUUCUU-UCCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9098_c0_g1_1625_TPlot.pdf
TRINITY_DN9098_c0_g1:1626	si_a323	TRINITY_DN9098_c0_g1	1615	1634	1626	-26.80	-19.00	0.708955223880597	7	1-3,1634-1632;5-14,1631-1622;16-21,1620-1615	4-4,x-x[BULq];15-15,1621-1621[SIL]	((((((.((((((((((-(((&))).)))))))))).))))))	GAGGAGAAAGAGGAUCA-GGA&UCCAUGAUUUUUUUAUUCCUU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN9098_c0_g1_1626_TPlot.pdf
TRINITY_DN9098_c0_g1:1627	si_a322	TRINITY_DN9098_c0_g1	1616	1635	1627	-27.00	-17.70	0.655555555555556	7	2-4,1634-1632;6-15,1631-1622;17-21,1620-1616	1-1,1635-1635[UP5];5-5,x-x[BULq];16-16,1621-1621[SIL]	(((((.((((((((((-(((.&.))).)))))))))).)))))	AGGAGAAAGAGGAUCA-GGAA&AUCCAUGAUUUUUUUAUUCCU	3	0.999999930260775	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9098_c0_g1_1627_TPlot.pdf
TRINITY_DN9098_c0_g1:2120	si_s617	TRINITY_DN9098_c0_g1	2109	2129	2120	-28.30	-19.30	0.681978798586572	12	5-10,2125-2120;12-19,2118-2111	1-4,2129-2126[UP5];11-11,2119-2119[SIL];20-21,2110-2109[UP3]	..((((((((.((((((....&....)))))).))))))))..	CCAAGAUCGCCUGGGUUGCUU&UUUAAAUCCAAGCGAUCUUUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s617_TRINITY_DN9098_c0_g1_2120_TPlot.pdf
TRINITY_DN9098_c0_g1:2121	si_s616	TRINITY_DN9098_c0_g1	2110	2130	2121	-28.30	-19.30	0.681978798586572	13	6-11,2125-2120;13-20,2118-2111	1-5,2130-2126[UP5];12-12,2119-2119[SIL];21-21,2110-2110[UP3]	.((((((((.((((((.....&.....)))))).)))))))).	CAAGAUCGCCUGGGUUGCUUA&UUUUAAAUCCAAGCGAUCUUU	2	0.801704978221039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s616_TRINITY_DN9098_c0_g1_2121_TPlot.pdf
TRINITY_DN9098_c0_g1:2123	si_s614	TRINITY_DN9098_c0_g1	2112	2132	2123	-28.30	-18.50	0.653710247349823	15	8-13,2125-2120;15-21,2118-2112	1-7,2132-2126[UP5];14-14,2119-2119[SIL]	(((((((.((((((.......&.......)))))).)))))))	AGAUCGCCUGGGUUGCUUACU&UUUUUUAAAUCCAAGCGAUCU	4	0.98977176969397	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s614_TRINITY_DN9098_c0_g1_2123_TPlot.pdf
TRINITY_DN9098_c0_g1:2226	si_a781	TRINITY_DN9098_c0_g1	2214	2235	2226	-27.40	-18.20	0.664233576642336	8	1-11,2235-2225;14-18,2221-2217	12-13,2224-2222[AILt];19-21,2216-2214[UP3]	...(((((...(((((((((((&)))))))))))-..)))))...	UAUGAAAAUCAAGAAGAGUUGA&UCAACUCUUCU-AUUUUUCUAU	2	0.999665500007058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN9098_c0_g1_2226_TPlot.pdf
TRINITY_DN9098_c0_g1:2227	si_a780	TRINITY_DN9098_c0_g1	2215	2236	2227	-27.30	-18.30	0.67032967032967	7	2-12,2235-2225;15-19,2221-2217	1-1,2236-2236[UP5];13-14,2224-2222[AILt];20-21,2216-2215[UP3]	..(((((...(((((((((((.&.)))))))))))-..)))))..	AUGAAAAUCAAGAAGAGUUGAC&UUCAACUCUUCU-AUUUUUCUA	3	0.999994472798421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a780_TRINITY_DN9098_c0_g1_2227_TPlot.pdf
TRINITY_DN9098_c0_g1:2285	si_a879	TRINITY_DN9098_c0_g1	2274	2294	2285	-27.40	-18.00	0.656934306569343	9	1-13,2294-2282	14-21,2281-2274[UP3]	........(((((((((((((&)))))))))))))........	GUGAAAGAGAUUGCAGCUAAA&UUUAGUUGCAAUCAAUAUAGU	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a879_TRINITY_DN9098_c0_g1_2285_TPlot.pdf
TRINITY_DN9098_c0_g1:2287	si_a877	TRINITY_DN9098_c0_g1	2276	2296	2287	-27.00	-18.00	0.666666666666667	10	3-15,2294-2282	1-2,2296-2295[UP5];16-21,2281-2276[UP3]	......(((((((((((((..&..)))))))))))))......	GAAAGAGAUUGCAGCUAAAAA&GAUUUAGUUGCAAUCAAUAUA	4	0.990582382490686	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a877_TRINITY_DN9098_c0_g1_2287_TPlot.pdf
TRINITY_DN9098_c0_g1:2290	si_a874	TRINITY_DN9098_c0_g1	2279	2299	2290	-26.70	-18.00	0.674157303370786	13	6-18,2294-2282	1-5,2299-2295[UP5];19-21,2281-2279[UP3]	...(((((((((((((.....&.....)))))))))))))...	AGAGAUUGCAGCUAAAAAGAU&AAAGAUUUAGUUGCAAUCAAU	3	0.986861208837673	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a874_TRINITY_DN9098_c0_g1_2290_TPlot.pdf
TRINITY_DN9098_c0_g1:2977	si_a464	TRINITY_DN9098_c0_g1	2966	2986	2977	-19.60	-14.40	0.73469387755102	5.5	3-7,2984-2980;9-21,2978-2966	1-2,2986-2985[UP5];8-8,2979-2979[SIL]	(((((((((((((.(((((..&..))))).)))))))))))))	AAUAAUUGCAUAUAAUAUAGA&UAUAUAUAAUAUGUAAUUAUU	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN9098_c0_g1_2977_TPlot.pdf
TRINITY_DN9098_c0_g1:3517	si_a68	TRINITY_DN9098_c0_g1	3506	3526	3517	-25.40	-17.20	0.677165354330709	6	1-5,3526-3522;7-12,3520-3515;14-21,3513-3506	6-6,3521-3521[SIL];13-13,3514-3514[SIL]	((((((((.((((((.(((((&))))).)))))).))))))))	UGAAGAAUCAUUUGAUAGGGG&CUUCUUUCAAAUUGUUUUUCA	4	0.99999999928247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN9098_c0_g1_3517_TPlot.pdf
TRINITY_DN909_c0_g1:5138	si_a395	TRINITY_DN909_c0_g1	5126	5147	5138	-24.70	-16.60	0.672064777327935	6	2-15,5146-5133;16-20,5131-5127	1-1,5147-5147[UP5];x-x,5132-5132[BULt];21-21,5126-5126[UP3]	.(((((.((((((((((((((.&.))))))))))))))-))))).	UCAAAAUCGGUUUUGUAUUCUA&AAGAAUAUAGAAUUG-UUUUGU	4	0.991679453114618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN909_c0_g1_5138_TPlot.pdf
TRINITY_DN909_c0_g1:6110	si_a420	TRINITY_DN909_c0_g1	6100	6119	6110	-25.00	-16.30	0.652	11	6-17,6114-6103;19-21,6102-6100	1-5,6119-6115[UP5];18-18,x-x[BULq]	(((-((((((((((((.....&.....)))))))))))).)))	GGG-CCUGUAUUUAUUGAUGU&AUUUAAAUAAAUAUAGGAUCC	3	0.95101961161395	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a420_TRINITY_DN909_c0_g1_6110_TPlot.pdf
TRINITY_DN909_c0_g1:6113	si_s882	TRINITY_DN909_c0_g1	6100	6124	6113	-26.30	-17.18	0.653231939163498	12.5	1-6,6124-6119;9-13,6114-6110;14-21,6107-6100	7-8,6118-6115[AILt];x-x,6109-6108[BULt]	((((((((..(((((....((((((&))))))--..)))))--))))))))	GGGCCUGUAUUUAUUGAUGUGGUUC&GAACUA--AAAAUAA--AUAGGCUU	4	0.873084770922487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s882_TRINITY_DN909_c0_g1_6113_TPlot.pdf
TRINITY_DN9101_c0_g1:206	si_s70	TRINITY_DN9101_c0_g1	195	215	206	-25.80	-16.88	0.654263565891473	12	2-10,214-206;14-21,202-195	1-1,215-215[UP5];11-13,205-203[SIL]	((((((((...(((((((((.&.)))))))))...))))))))	GGAGGGGGCUUGGAUGGAGGC&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9101_c0_g1_206_TPlot.pdf
TRINITY_DN9102_c0_g1:1168	si_a25	TRINITY_DN9102_c0_g1	1157	1177	1168	-26.50	-17.50	0.660377358490566	15.5	7-21,1171-1157	1-6,1177-1172[UP5]	(((((((((((((((......&......)))))))))))))))	GGUUUUGGGACUGGGUGGGAG&UUUAUUUUUAGUUCUAAGACC	3	0.999302177733887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN9102_c0_g1_1168_TPlot.pdf
TRINITY_DN9102_c0_g1:1359	si_a836	TRINITY_DN9102_c0_g1	1348	1368	1359	-24.10	-16.00	0.663900414937759	17.5	9-20,1360-1349	1-8,1368-1361[UP5];21-21,1348-1348[UP3]	.((((((((((((........&........)))))))))))).	AUGGCGGCUUCUACAUGGACA&AAAAAAAAUAGAAGUUGCUAA	2	0.992394551209544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a836_TRINITY_DN9102_c0_g1_1359_TPlot.pdf
TRINITY_DN9102_c0_g1:2285	si_a515	TRINITY_DN9102_c0_g1	2274	2294	2285	-38.60	-25.28	0.654922279792746	12	1-5,2294-2290;8-9,2287-2286;13-19,2282-2276	6-7,2289-2288[SIL];10-12,2285-2283[SIL];20-21,2275-2274[UP3]	..(((((((...((..(((((&)))))..))...)))))))..	AAGUCCGCCGACCAGGCCAAG&CUUGGAAUGUAAGGCGGACAC	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a515_TRINITY_DN9102_c0_g1_2285_TPlot.pdf
TRINITY_DN9102_c0_g1:2287	si_a513	TRINITY_DN9102_c0_g1	2276	2296	2287	-39.50	-29.38	0.74379746835443	8	1-7,2296-2290;10-11,2287-2286;15-21,2282-2276	8-9,2289-2288[SIL];12-14,2285-2283[SIL]	(((((((...((..(((((((&)))))))..))...)))))))	GUCCGCCGACCAGGCCAAGGA&UCCUUGGAAUGUAAGGCGGAC	3	0.114376326510724	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN9102_c0_g1_2287_TPlot.pdf
TRINITY_DN9102_c0_g1:2288	si_a512	TRINITY_DN9102_c0_g1	2277	2297	2288	-37.80	-26.68	0.705820105820106	7.5	1-8,2297-2290;11-12,2287-2286;16-21,2282-2277	9-10,2289-2288[SIL];13-15,2285-2283[SIL]	((((((...((..((((((((&))))))))..))...))))))	UCCGCCGACCAGGCCAAGGAG&UUCCUUGGAAUGUAAGGCGGA	3	0.397155821750068	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN9102_c0_g1_2288_TPlot.pdf
TRINITY_DN9103_c0_g1:224	si_a411	TRINITY_DN9103_c0_g1	212	233	224	-17.90	-12.00	0.670391061452514	6.5	2-13,232-221;14-18,219-215	1-1,233-233[UP5];x-x,220-220[BULt];19-21,214-212[UP3]	...(((((.((((((((((((.&.))))))))))))-)))))...	AUAUGUUUCAAAUGUAAACAAG&UUUGUUUAUAUUU-AAAUAAAU	4	0.999999999484294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN9103_c0_g1_224_TPlot.pdf
TRINITY_DN9103_c0_g1:779	si_a662	TRINITY_DN9103_c0_g1	769	788	779	-33.40	-22.50	0.673652694610778	5.5	1-12,788-777;14-20,776-770	13-13,x-x[BULq];21-21,769-769[UP3]	.(((((((-((((((((((((&)))))))))))).))))))).	CAGGAAUC-AUGGGUAUUUUU&GGAAAUGCCUAUUGAUUCCUU	4	0.933072747488554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a662_TRINITY_DN9103_c0_g1_779_TPlot.pdf
TRINITY_DN9103_c0_g1:850	si_a460	TRINITY_DN9103_c0_g1	840	859	850	-21.60	-14.60	0.675925925925926	6	1-14,859-846;16-18,845-843	15-15,x-x[BULq];19-21,842-840[UP3]	...(((-((((((((((((((&)))))))))))))).)))...	UUAACA-AUUAUAUGUGACAA&UUGUUAUAUAUAAUAUGUAAU	3	0.998192995271957	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN9103_c0_g1_850_TPlot.pdf
TRINITY_DN9103_c0_g1:853	si_a457	TRINITY_DN9103_c0_g1	843	862	853	-23.50	-16.90	0.719148936170213	5	2-17,861-846;19-21,845-843	1-1,862-862[UP5];18-18,x-x[BULq]	(((-((((((((((((((((.&.)))))))))))))))).)))	ACA-AUUAUAUGUGACAAUAU&UUGUUGUUAUAUAUAAUAUGU	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN9103_c0_g1_853_TPlot.pdf
TRINITY_DN9103_c0_g1:855	si_a455	TRINITY_DN9103_c0_g1	844	864	855	-21.10	-15.80	0.748815165876777	10	4-19,861-846	1-3,864-862[UP5];20-21,845-844[UP3]	..((((((((((((((((...&...))))))))))))))))..	CAAUUAUAUGUGACAAUAUUA&AAUUGUUGUUAUAUAUAAUAU	4	0.944419911599489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN9103_c0_g1_855_TPlot.pdf
TRINITY_DN9103_c0_g1:856	si_a454	TRINITY_DN9103_c0_g1	845	865	856	-21.30	-15.80	0.741784037558685	10.5	5-20,861-846	1-4,865-862[UP5];21-21,845-845[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUUAUAUGUGACAAUAUUAG&UAAUUGUUGUUAUAUAUAAUA	4	0.937091633410598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN9103_c0_g1_856_TPlot.pdf
TRINITY_DN9103_c0_g1:857	si_a453	TRINITY_DN9103_c0_g1	846	866	857	-21.10	-15.50	0.734597156398104	11.5	6-21,861-846	1-5,866-862[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUUAUAUGUGACAAUAUUAGA&AUAAUUGUUGUUAUAUAUAAU	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN9103_c0_g1_857_TPlot.pdf
TRINITY_DN9105_c0_g1:2791	si_a407	TRINITY_DN9105_c0_g1	2780	2800	2791	-19.80	-13.10	0.661616161616162	8.5	1-4,2800-2797;7-19,2794-2782	5-6,2796-2795[SIL];20-21,2781-2780[UP3]	..(((((((((((((..((((&))))..)))))))))))))..	CGUUAAAUGUAAAUAUUGCAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN9105_c0_g1_2791_TPlot.pdf
TRINITY_DN9106_c0_g1:1304	si_a413	TRINITY_DN9106_c0_g1	1293	1313	1304	-18.40	-12.40	0.673913043478261	8.5	2-17,1312-1297	1-1,1313-1313[UP5];18-21,1296-1293[UP3]	....((((((((((((((((.&.))))))))))))))))....	CAGGUUGUUUGGAUAUAAAUG&UGUUUAUAUUUAAAUAAAUAU	3	0.999900061622059	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN9106_c0_g1_1304_TPlot.pdf
TRINITY_DN9106_c0_g1:1306	si_a411	TRINITY_DN9106_c0_g1	1295	1315	1306	-17.90	-12.40	0.692737430167598	10	4-19,1312-1297	1-3,1315-1313[UP5];20-21,1296-1295[UP3]	..((((((((((((((((...&...))))))))))))))))..	GGUUGUUUGGAUAUAAAUGCU&UUUGUUUAUAUUUAAAUAAAU	3	0.999998424516423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN9106_c0_g1_1306_TPlot.pdf
TRINITY_DN9106_c0_g1:1307	si_a410	TRINITY_DN9106_c0_g1	1296	1316	1307	-17.80	-12.40	0.696629213483146	10.5	5-20,1312-1297	1-4,1316-1313[UP5];21-21,1296-1296[UP3]	.((((((((((((((((....&....)))))))))))))))).	GUUGUUUGGAUAUAAAUGCUU&UUUUGUUUAUAUUUAAAUAAA	2	0.999968566676748	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9106_c0_g1_1307_TPlot.pdf
TRINITY_DN9106_c0_g1:1560	si_a135	TRINITY_DN9106_c0_g1	1550	1569	1560	-25.70	-16.80	0.653696498054475	5	1-2,1569-1568;4-14,1566-1556;16-21,1555-1550	3-3,1567-1567[SIL];15-15,x-x[BULq]	((((((-(((((((((((.((&)).))))))))))).))))))	AGCGAC-AUUAAUUACUGCUG&CAAUAGUAAUUAAUCGUUGUU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN9106_c0_g1_1560_TPlot.pdf
TRINITY_DN910_c0_g1:2336	si_s490	TRINITY_DN910_c0_g1	2325	2346	2336	-17.80	-11.90	0.668539325842697	8.5	2-6,2345-2341;7-19,2339-2327	1-1,2346-2346[UP5];x-x,2340-2340[BULt];20-21,2326-2325[UP3]	..(((((((((((((.(((((.&.)))))-)))))))))))))..	CAUUGUUUGUAUUUGUAAUGGU&UUUAUU-UAAAUAUAAACAAAA	3	0.99985318296736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN910_c0_g1_2336_TPlot.pdf
TRINITY_DN9111_c0_g1:1565	si_a434	TRINITY_DN9111_c0_g1	1554	1574	1565	-36.40	-24.50	0.673076923076923	8	3-14,1572-1561;17-20,1558-1555	1-2,1574-1573[UP5];15-16,1560-1559[SIL];21-21,1554-1554[UP3]	.((((..((((((((((((..&..))))))))))))..)))).	CUCUUCAGUCCAACGGGUCGG&AGGAUCCGUUGGAUAUGAGAU	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a434_TRINITY_DN9111_c0_g1_1565_TPlot.pdf
TRINITY_DN9111_c0_g1:1571	si_a428	TRINITY_DN9111_c0_g1	1560	1580	1571	-31.80	-21.30	0.669811320754717	17.5	9-20,1572-1561	1-8,1580-1573[UP5];21-21,1560-1560[UP3]	.((((((((((((........&........)))))))))))).	AGUCCAACGGGUCGGUGAUCG&AAAUAUAGGAUCCGUUGGAUA	4	0.987935220213838	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a428_TRINITY_DN9111_c0_g1_1571_TPlot.pdf
TRINITY_DN9111_c0_g1:1572	si_a427	TRINITY_DN9111_c0_g1	1561	1581	1572	-31.80	-20.80	0.654088050314465	18.5	10-21,1572-1561	1-9,1581-1573[UP5]	((((((((((((.........&.........))))))))))))	GUCCAACGGGUCGGUGAUCGC&UAAAUAUAGGAUCCGUUGGAU	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a427_TRINITY_DN9111_c0_g1_1572_TPlot.pdf
TRINITY_DN9111_c0_g1:1870	si_a801	TRINITY_DN9111_c0_g1	1859	1878	1870	-34.60	-22.70	0.65606936416185	7.5	2-7,1877-1872;9-11,1871-1869;13-20,1867-1860	1-1,1878-1878[UP5];8-8,x-x[BULq];12-12,1868-1868[SIL];21-21,1859-1859[UP3]	.((((((((.(((-((((((.&.)))))).))).)))))))).	ACUUCGUUUGGGA-UGGAAGC&UUUUCCAAUCCGAAGCGAAGA	4	0.890160208548261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a801_TRINITY_DN9111_c0_g1_1870_TPlot.pdf
TRINITY_DN9111_c0_g1:1871	si_a800	TRINITY_DN9111_c0_g1	1860	1879	1871	-33.70	-22.70	0.673590504451039	7.5	3-8,1877-1872;10-12,1871-1869;14-21,1867-1860	1-2,1879-1878[UP5];9-9,x-x[BULq];13-13,1868-1868[SIL]	((((((((.(((-((((((..&..)))))).))).))))))))	CUUCGUUUGGGA-UGGAAGCG&AUUUUCCAAUCCGAAGCGAAG	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a800_TRINITY_DN9111_c0_g1_1871_TPlot.pdf
TRINITY_DN9113_c0_g1:971	si_a454	TRINITY_DN9113_c0_g1	956	980	971	-21.30	-15.50	0.727699530516432	13	1-10,980-971;11-20,966-957	x-x,970-967[BULt];21-21,956-956[UP3]	.((((((((((....((((((((((&))))))))))----)))))))))).	AGUUAUGUAUGAAACACAACGGUUA&UAAUUGUUGU----UAUAUAUAAUA	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN9113_c0_g1_971_TPlot.pdf
TRINITY_DN9125_c0_g1:2302	si_a504	TRINITY_DN9125_c0_g1	2288	2311	2302	-32.90	-21.90	0.665653495440729	6	1-13,2311-2299;14-15,2297-2296;16-17,2294-2293;19-21,2290-2288	x-x,2298-2298[BULt];x-x,2295-2295[BULt];18-18,2292-2291[AILt]	(((..((.((.(((((((((((((&)))))))))))))-))-))-.)))	ACAGAUCUCACAGGAGGACGAGAA&UUUUCGUCUUCCU-UG-GA-AUGU	2	0.999442797370729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN9125_c0_g1_2302_TPlot.pdf
TRINITY_DN9125_c0_g1:2305	si_a501	TRINITY_DN9125_c0_g1	2292	2314	2305	-33.50	-21.90	0.653731343283582	8	1-1,2314-2314;3-16,2312-2299;17-18,2297-2296;19-20,2294-2293	2-2,2313-2313[SIL];x-x,2298-2298[BULt];x-x,2295-2295[BULt];21-21,2292-2292[UP3]	.((.((.((((((((((((((.(&).))))))))))))))-))-)).	AUCUCACAGGAGGACGAGAAGAG&CGUUUUUCGUCUUCCU-UG-GAA	2	0.999999987791848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN9125_c0_g1_2305_TPlot.pdf
TRINITY_DN9125_c0_g1:2306	si_a500	TRINITY_DN9125_c0_g1	2294	2315	2306	-34.40	-23.30	0.677325581395349	7	1-2,2315-2314;4-17,2312-2299;18-20,2297-2295	3-3,2313-2313[SIL];x-x,2298-2298[BULt];21-21,2294-2294[UP3]	.(((.((((((((((((((.((&)).))))))))))))))-))).	CUCACAGGAGGACGAGAAGAGA&UCGUUUUUCGUCUUCCU-UGGA	3	0.999999313010345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN9125_c0_g1_2306_TPlot.pdf
TRINITY_DN9125_c0_g1:2309	si_a497	TRINITY_DN9125_c0_g1	2298	2318	2309	-32.00	-22.20	0.69375	10.5	4-5,2315-2314;7-20,2312-2299	1-3,2318-2316[UP5];6-6,2313-2313[SIL];21-21,2298-2298[UP3]	.((((((((((((((.((...&...)).)))))))))))))).	CAGGAGGACGAGAAGAGAAAG&AUGUCGUUUUUCGUCUUCCUU	3	0.99999999216637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN9125_c0_g1_2309_TPlot.pdf
TRINITY_DN9125_c0_g1:2356	si_a331	TRINITY_DN9125_c0_g1	2345	2367	2356	-30.60	-21.10	0.689542483660131	12.5	1-8,2367-2360;9-18,2357-2348	x-x,2359-2358[BULt];19-21,2347-2345[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	GCAGGGAUAGGGAACGUGAGAGA&UUUUUUAU--UCCUUGUCCCGAA	3	0.999015523453256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN9125_c0_g1_2356_TPlot.pdf
TRINITY_DN9125_c0_g1:2357	si_a330	TRINITY_DN9125_c0_g1	2346	2368	2357	-30.50	-21.30	0.698360655737705	12	2-9,2367-2360;10-19,2357-2348	1-1,2368-2368[UP5];x-x,2359-2358[BULt];20-21,2347-2346[UP3]	..((((((((((..((((((((.&.))))))))--))))))))))..	CAGGGAUAGGGAACGUGAGAGAG&UUUUUUUAU--UCCUUGUCCCGA	2	0.971549756688101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN9125_c0_g1_2357_TPlot.pdf
TRINITY_DN9125_c0_g1:2430	si_s75	TRINITY_DN9125_c0_g1	2418	2440	2430	-24.00	-16.60	0.691666666666667	10	1-7,2440-2434;8-11,2432-2429;12-20,2427-2419	x-x,2433-2433[BULt];x-x,2428-2428[BULt];21-21,2418-2418[UP3]	.(((((((((.((((.(((((((&)))))))-))))-))))))))).	CGAGAGGGAGCGAGACAGAGAUA&UAUUUUU-UUUC-UUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9125_c0_g1_2430_TPlot.pdf
TRINITY_DN9125_c0_g1:2468	si_s82	TRINITY_DN9125_c0_g1	2457	2477	2468	-28.90	-20.60	0.71280276816609	6	1-11,2477-2467;13-16,2466-2463;17-21,2461-2457	12-12,x-x[BULq];x-x,2462-2462[BULt]	(((((.((((-(((((((((((&))))))))))).))))-)))))	AAGGACGGAG-AGGGAAAGAGA&UUUCUUUCCUUUCUUC-UUCUU	2	0.999999999652675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9125_c0_g1_2468_TPlot.pdf
TRINITY_DN9125_c0_g1:2469	si_s81	TRINITY_DN9125_c0_g1	2458	2478	2469	-28.90	-20.60	0.71280276816609	5	1-12,2478-2467;14-17,2466-2463;18-21,2461-2458	13-13,x-x[BULq];x-x,2462-2462[BULt]	((((.((((-((((((((((((&)))))))))))).))))-))))	AGGACGGAG-AGGGAAAGAGAA&UUUUCUUUCCUUUCUUC-UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9125_c0_g1_2469_TPlot.pdf
TRINITY_DN9125_c0_g1:2472	si_s78	TRINITY_DN9125_c0_g1	2462	2481	2472	-26.20	-21.40	0.816793893129771	5	1-15,2481-2467;17-20,2466-2463	16-16,x-x[BULq];21-21,2462-2462[UP3]	.((((-(((((((((((((((&))))))))))))))).)))).	CGGAG-AGGGAAAGAGAAAGA&UUUUUUUCUUUCCUUUCUUCU	3	0.999761340034339	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9125_c0_g1_2472_TPlot.pdf
TRINITY_DN9125_c0_g1:2476	si_s80	TRINITY_DN9125_c0_g1	2463	2485	2476	-28.20	-20.30	0.719858156028369	7	2-10,2484-2476;11-16,2474-2469;17-21,2467-2463	1-1,2485-2485[UP5];x-x,2475-2475[BULt];x-x,2468-2468[BULt]	(((((.((((((.(((((((((.&.)))))))))-))))))-)))))	GGAGAGGGAAAGAGAAAGAGAGU&UUUUUCUUUC-CUUUCU-UCUUC	2	0.999999998852787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9125_c0_g1_2476_TPlot.pdf
TRINITY_DN9125_c0_g1:2477	si_s75	TRINITY_DN9125_c0_g1	2463	2486	2477	-24.00	-19.90	0.829166666666667	8	1-13,2486-2474;14-21,2470-2463	x-x,2473-2471[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	GGAGAGGGAAAGAGAAAGAGAGUA&UAUUUUUUUUCUU---UCCUUUCU	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9125_c0_g1_2477_TPlot.pdf
TRINITY_DN9125_c0_g1:2480	si_s70	TRINITY_DN9125_c0_g1	2469	2494	2480	-25.80	-16.92	0.655813953488372	17.5	2-6,2493-2489;8-21,2482-2469	1-1,2494-2494[UP5];7-7,2488-2483[AILt]	((((((((((((((......(((((.&.)))))-----.))))))))))))))	GGAAAGAGAAAGAGAGUACAGGGAGC&ACUUCU-----AUUUUUUUUCUUUCC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9125_c0_g1_2480_TPlot.pdf
TRINITY_DN912_c0_g1:731	si_s74	TRINITY_DN912_c0_g1	718	740	731	-25.00	-19.90	0.796	5	2-13,739-728;14-21,725-718	1-1,740-740[UP5];x-x,727-726[BULt]	((((((((..((((((((((((.&.))))))))))))--))))))))	GAGAGGAACUGGAAAGAAAAUAA&CUAUUUUUUUUCU--UUCCUUUC	2	0.964405633114304	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN912_c0_g1_731_TPlot.pdf
TRINITY_DN912_c0_g1:734	si_s71	TRINITY_DN912_c0_g1	721	744	734	-25.70	-18.50	0.719844357976654	5.5	1-5,744-740;6-16,738-728;17-21,725-721	x-x,739-739[BULt];x-x,727-726[BULt]	(((((..(((((((((((.(((((&)))))-)))))))))))--)))))	AGGAACUGGAAAGAAAAUAAGAAG&CUUCU-AUUUUUUUUCU--UUCCU	3	0.999999999991292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN912_c0_g1_734_TPlot.pdf
TRINITY_DN912_c0_g1:735	si_s70	TRINITY_DN912_c0_g1	722	745	735	-25.80	-17.80	0.689922480620155	6.5	2-6,744-740;7-17,738-728;18-21,725-722	1-1,745-745[UP5];x-x,739-739[BULt];x-x,727-726[BULt]	((((..(((((((((((.(((((.&.)))))-)))))))))))--))))	GGAACUGGAAAGAAAAUAAGAAGC&ACUUCU-AUUUUUUUUCU--UUCC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN912_c0_g1_735_TPlot.pdf
TRINITY_DN912_c0_g1:790	si_s509	TRINITY_DN912_c0_g1	779	799	790	-22.80	-15.70	0.68859649122807	7	1-6,799-794;8-17,792-783	7-7,793-793[SIL];18-21,782-779[UP3]	....((((((((((.((((((&)))))).))))))))))....	AUUGAAGAAUAUGGUAUUGUU&AACAAUUCUAUAUUCUUAAUU	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s509_TRINITY_DN912_c0_g1_790_TPlot.pdf
TRINITY_DN912_c0_g1:792	si_s507	TRINITY_DN912_c0_g1	781	801	792	-22.70	-15.90	0.700440528634361	8	3-8,799-794;10-19,792-783	1-2,801-800[UP5];9-9,793-793[SIL];20-21,782-781[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UGAAGAAUAUGGUAUUGUUAG&AAAACAAUUCUAUAUUCUUAA	4	0.951897771739806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s507_TRINITY_DN912_c0_g1_792_TPlot.pdf
TRINITY_DN912_c0_g1:793	si_s506	TRINITY_DN912_c0_g1	782	802	793	-24.30	-15.90	0.654320987654321	9	4-9,799-794;11-20,792-783	1-3,802-800[UP5];10-10,793-793[SIL];21-21,782-782[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	GAAGAAUAUGGUAUUGUUAGA&CAAAACAAUUCUAUAUUCUUA	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s506_TRINITY_DN912_c0_g1_793_TPlot.pdf
TRINITY_DN9132_c1_g1:300	si_a819	TRINITY_DN9132_c1_g1	289	309	300	-28.90	-20.30	0.70242214532872	5	1-10,309-300;11-15,298-294;17-19,293-291	x-x,299-299[BULt];16-16,x-x[BULq];20-21,290-289[UP3]	..(((-(((((.((((((((((&))))))))))-))))).)))..	ACUUC-UUCCUCUUCUUCUUCU&AGAAGAAGAA-AGGAAAGAAAA	4	0.894602581358127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN9132_c1_g1_300_TPlot.pdf
TRINITY_DN9132_c1_g1:316	si_a40	TRINITY_DN9132_c1_g1	304	326	316	-40.50	-26.60	0.65679012345679	8.5	3-8,324-319;9-13,317-313;14-20,311-305	1-2,326-325[UP5];x-x,318-318[BULt];x-x,312-312[BULt];21-21,304-304[UP3]	.(((((((.(((((.((((((..&..))))))-)))))-))))))).	UCUUCUGGUGCCUAUCCGGUCCG&AAGACCGG-UAGGU-CUAGGAGU	0	0.0676449523395386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN9132_c1_g1_316_TPlot.pdf
TRINITY_DN9133_c0_g2:357	si_a611	TRINITY_DN9133_c0_g2	346	366	357	-36.40	-23.90	0.656593406593407	5	1-12,366-355;14-18,354-350;19-20,348-347	13-13,x-x[BULq];x-x,349-349[BULt];21-21,346-346[UP3]	.((.(((((-((((((((((((&)))))))))))).)))))-)).	CUGACUUAG-CGAUUGGAGUUG&CAAUUCCAAUCGACUAGG-CGU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a611_TRINITY_DN9133_c0_g2_357_TPlot.pdf
TRINITY_DN9133_c0_g2:360	si_a608	TRINITY_DN9133_c0_g2	350	368	360	-36.60	-24.50	0.669398907103825	4.5	1-2,368-367;4-15,366-355;17-21,354-350	3-3,x-x[BULq];16-16,x-x[BULq]	(((((-((((((((((((-((&)).)))))))))))).)))))	CUUAG-CGAUUGGAGUUG-GA&UCGCAAUUCCAAUCGACUAGG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a608_TRINITY_DN9133_c0_g2_360_TPlot.pdf
TRINITY_DN9133_c0_g2:545	si_a456	TRINITY_DN9133_c0_g2	534	554	545	-22.80	-15.40	0.675438596491228	10.5	3-16,552-539	1-2,554-553[UP5];17-21,538-534[UP3]	.....((((((((((((((..&..)))))))))))))).....	GAGGAUAUGUAUAGCAGCAUG&AUUGUUGUUAUAUAUAAUAUG	4	0.997637916465209	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN9133_c0_g2_545_TPlot.pdf
TRINITY_DN9133_c0_g2:547	si_a454	TRINITY_DN9133_c0_g2	536	556	547	-21.30	-15.40	0.723004694835681	12.5	5-18,552-539	1-4,556-553[UP5];19-21,538-536[UP3]	...((((((((((((((....&....))))))))))))))...	GGAUAUGUAUAGCAGCAUGAC&UAAUUGUUGUUAUAUAUAAUA	3	0.984235449791218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN9133_c0_g2_547_TPlot.pdf
TRINITY_DN9133_c0_g2:864	si_s174	TRINITY_DN9133_c0_g2	851	873	864	-39.00	-27.20	0.697435897435897	9	1-10,873-864;11-12,862-861;13-19,859-853	x-x,863-863[BULt];x-x,860-860[BULt];20-21,852-851[UP3]	..(((((((.((.((((((((((&))))))))))-))-)))))))..	GCUACUCGGCGCUGUUUUUGCCC&GGGUAAAGAU-GC-CCGAGUAAC	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s174_TRINITY_DN9133_c0_g2_864_TPlot.pdf
TRINITY_DN9133_c0_g2:954	si_a450	TRINITY_DN9133_c0_g2	945	963	954	-25.20	-17.70	0.702380952380952	5.5	1-11,963-953;14-20,952-946	12-13,x-x[BULq];21-21,945-945[UP3]	.(((((((--(((((((((((&)))))))))))..))))))).	CUAUAUGA--GCAAUUAUCUC&GAGAUAAUUGUUGUUAUAUAU	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN9133_c0_g2_954_TPlot.pdf
TRINITY_DN9133_c0_g2:955	si_a449	TRINITY_DN9133_c0_g2	946	964	955	-25.70	-18.60	0.723735408560311	3.5	1-12,964-953;15-21,952-946	13-14,x-x[BULq]	(((((((--((((((((((((&))))))))))))..)))))))	UAUAUGA--GCAAUUAUCUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN9133_c0_g2_955_TPlot.pdf
TRINITY_DN9133_c0_g2:956	si_a448	TRINITY_DN9133_c0_g2	945	965	956	-25.50	-18.30	0.717647058823529	4.5	2-14,964-952;17-20,949-946	1-1,965-965[UP5];15-16,951-950[SIL];21-21,945-945[UP3]	.((((..(((((((((((((.&.)))))))))))))..)))).	CUAUAUGAGCAAUUAUCUCAG&AUGAGAUAAUUGUUGUUAUAU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN9133_c0_g2_956_TPlot.pdf
TRINITY_DN9133_c0_g2:957	si_a447	TRINITY_DN9133_c0_g2	946	966	957	-25.70	-18.20	0.708171206225681	5.5	3-15,964-952;18-21,949-946	1-2,966-965[UP5];16-17,951-950[SIL]	((((..(((((((((((((..&..)))))))))))))..))))	UAUAUGAGCAAUUAUCUCAGG&UAUGAGAUAAUUGUUGUUAUA	3	0.930899247619276	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN9133_c0_g2_957_TPlot.pdf
TRINITY_DN9133_c0_g2:958	si_a446	TRINITY_DN9133_c0_g2	947	967	958	-25.50	-16.70	0.654901960784314	7.5	4-16,964-952;19-21,949-947	1-3,967-965[UP5];17-18,951-950[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	AUAUGAGCAAUUAUCUCAGGC&AUAUGAGAUAAUUGUUGUUAU	3	0.999964408143511	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN9133_c0_g2_958_TPlot.pdf
TRINITY_DN9134_c0_g1:8471	si_a635	TRINITY_DN9134_c0_g1	8455	8480	8471	-26.10	-17.20	0.659003831417624	12	3-13,8478-8468;14-18,8462-8458	1-2,8480-8479[UP5];x-x,8467-8463[BULt];19-21,8457-8455[UP3]	...(((((.....(((((((((((..&..)))))))))))-----)))))...	CAGGCUCAACAGAGAAAAAUCGACUC&AUGUCGAUUUUUU-----UGAGUAAU	2	0.999999912765887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN9134_c0_g1_8471_TPlot.pdf
TRINITY_DN9134_c0_g1:9383	si_a149	TRINITY_DN9134_c0_g1	9371	9392	9383	-29.40	-20.60	0.700680272108844	8.5	1-12,9392-9381;13-16,9378-9375;18-21,9374-9371	x-x,9380-9379[BULt];17-17,x-x[BULq]	((((-((((..((((((((((((&))))))))))))--)))).))))	GUUG-CCUUCAAGAACAACGGCG&CGUUGUUGUUUU--AAGGUCAAU	2	0.965710165317979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a149_TRINITY_DN9134_c0_g1_9383_TPlot.pdf
TRINITY_DN9135_c1_g1:2046	si_a757	TRINITY_DN9135_c1_g1	2035	2055	2046	-33.10	-23.90	0.722054380664652	8	2-6,2054-2050;9-12,2047-2044;14-20,2042-2036	1-1,2055-2055[UP5];7-8,2049-2048[SIL];13-13,2043-2043[SIL];21-21,2035-2035[UP3]	.(((((((.((((..(((((.&.)))))..)))).))))))).	CGUCAAAGCCCCAUUGGAGGA&ACCUCCUUUGGGUUUUUGAUU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN9135_c1_g1_2046_TPlot.pdf
TRINITY_DN9136_c0_g1:282	si_s60	TRINITY_DN9136_c0_g1	271	291	282	-28.20	-19.60	0.695035460992908	12.5	7-21,285-271	1-6,291-286[UP5]	(((((((((((((((......&......)))))))))))))))	GAGAUGGAAGUUGCUCGAUGC&CAAGUUAGCAACUUCUAUUUU	4	0.949870321412553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN9136_c0_g1_282_TPlot.pdf
TRINITY_DN9138_c0_g1:1156	si_a23	TRINITY_DN9138_c0_g1	1145	1165	1156	-22.80	-16.10	0.706140350877193	5.5	1-15,1165-1151;17-20,1149-1146	16-16,1150-1150[SIL];21-21,1145-1145[UP3]	.((((.(((((((((((((((&))))))))))))))).)))).	ACUUAUAACUGAAGAUAAGUG&UAUUUAUUUUUAGUUCUAAGA	4	0.994716461279536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a23_TRINITY_DN9138_c0_g1_1156_TPlot.pdf
TRINITY_DN9138_c0_g1:2072	si_a447	TRINITY_DN9138_c0_g1	2061	2081	2072	-25.70	-17.60	0.684824902723736	6	1-16,2081-2066;18-20,2064-2062	17-17,2065-2065[SIL];21-21,2061-2061[UP3]	.(((.((((((((((((((((&)))))))))))))))).))).	AGUGCUAGCGAUUAUCUUAUA&UAUGAGAUAAUUGUUGUUAUA	4	0.988423169516825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN9138_c0_g1_2072_TPlot.pdf
TRINITY_DN9138_c0_g1:2073	si_a446	TRINITY_DN9138_c0_g1	2062	2082	2073	-25.50	-17.10	0.670588235294118	5.5	2-17,2081-2066;19-21,2064-2062	1-1,2082-2082[UP5];18-18,2065-2065[SIL]	(((.((((((((((((((((.&.)))))))))))))))).)))	GUGCUAGCGAUUAUCUUAUAA&AUAUGAGAUAAUUGUUGUUAU	2	0.988242631555895	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN9138_c0_g1_2073_TPlot.pdf
TRINITY_DN9138_c0_g1:4093	si_s815	TRINITY_DN9138_c0_g1	4080	4102	4093	-25.00	-17.08	0.6832	7.5	1-13,4102-4090;16-20,4085-4081	14-15,4089-4086[AILt];21-21,4080-4080[UP3]	.(((((....(((((((((((((&)))))))))))))--..))))).	AUUAUUUGGGUAAGAGAAGGUGA&UUACCUUUUCUUA--AUAAUGAA	2	0.865182054442296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s815_TRINITY_DN9138_c0_g1_4093_TPlot.pdf
TRINITY_DN9138_c0_g1:4096	si_s803	TRINITY_DN9138_c0_g1	4084	4105	4096	-26.00	-17.30	0.665384615384615	10.5	1-11,4105-4095;13-18,4092-4087	12-12,4094-4093[AILt];19-21,4086-4084[UP3]	...((((((..(((((((((((&)))))))))))-.))))))...	UUUGGGUAAGAGAAGGUGAAGU&AUUUUAUCUUC-GUUACCUUUU	2	0.999999955454844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN9138_c0_g1_4096_TPlot.pdf
TRINITY_DN9138_c0_g1:4097	si_s802	TRINITY_DN9138_c0_g1	4085	4106	4097	-26.40	-17.30	0.65530303030303	9.5	2-12,4105-4095;14-19,4092-4087	1-1,4106-4106[UP5];13-13,4094-4093[AILt];20-21,4086-4085[UP3]	..((((((..(((((((((((.&.)))))))))))-.))))))..	UUGGGUAAGAGAAGGUGAAGUU&UAUUUUAUCUUC-GUUACCUUU	4	0.999999999996509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN9138_c0_g1_4097_TPlot.pdf
TRINITY_DN9138_c0_g1:459	si_s606	TRINITY_DN9138_c0_g1	448	468	459	-28.20	-21.10	0.74822695035461	8	2-7,467-462;9-21,460-448	1-1,468-468[UP5];8-8,461-461[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UGGAUUUGGGAGGUGUUCGCG&AGCGAAUCUUUUUUAAAUCCA	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s606_TRINITY_DN9138_c0_g1_459_TPlot.pdf
TRINITY_DN9138_c0_g1:6902	si_a494	TRINITY_DN9138_c0_g1	6891	6911	6902	-29.50	-19.50	0.661016949152542	8.5	1-7,6911-6905;10-21,6902-6891	8-9,6904-6903[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	GAAGAUGAAGGAGAAUAUGUU&AAUAUGUCGUUUUUCGUCUUC	4	0.999999999999088	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN9138_c0_g1_6902_TPlot.pdf
TRINITY_DN9138_c0_g1:7509	si_s296	TRINITY_DN9138_c0_g1	7498	7517	7509	-31.60	-21.60	0.683544303797468	6.5	1-3,7517-7515;5-17,7514-7502	4-4,x-x[BULq];18-21,7501-7498[UP3]	....(((((((((((((-(((&))).)))))))))))))....	UAUCUUGCAAUUCCAAU-GAC&GUCGAUUGGAAUUGCGAAAAU	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN9138_c0_g1_7509_TPlot.pdf
TRINITY_DN9138_c0_g1:7864	si_a403	TRINITY_DN9138_c0_g1	7853	7873	7864	-22.00	-15.60	0.709090909090909	9	1-15,7873-7859	16-21,7858-7853[UP3]	......(((((((((((((((&)))))))))))))))......	UAUAGGGAGCAGAAUAAUUCU&AGAAUUGUUUUGUUUAUAUUU	3	0.999991371707863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN9138_c0_g1_7864_TPlot.pdf
TRINITY_DN9138_c0_g1:7866	si_a401	TRINITY_DN9138_c0_g1	7855	7875	7866	-22.60	-15.60	0.690265486725664	10	3-17,7873-7859	1-2,7875-7874[UP5];18-21,7858-7855[UP3]	....(((((((((((((((..&..)))))))))))))))....	UAGGGAGCAGAAUAAUUCUCG&AUAGAAUUGUUUUGUUUAUAU	2	0.999570955846679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN9138_c0_g1_7866_TPlot.pdf
TRINITY_DN9138_c0_g1:7867	si_a400	TRINITY_DN9138_c0_g1	7856	7876	7867	-22.80	-15.60	0.684210526315789	10.5	4-18,7873-7859	1-3,7876-7874[UP5];19-21,7858-7856[UP3]	...(((((((((((((((...&...)))))))))))))))...	AGGGAGCAGAAUAAUUCUCGA&UAUAGAAUUGUUUUGUUUAUA	3	0.999995920298892	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN9138_c0_g1_7867_TPlot.pdf
TRINITY_DN9139_c0_g1:573	si_a411	TRINITY_DN9139_c0_g1	562	582	573	-17.90	-12.00	0.670391061452514	8.5	2-15,581-568	1-1,582-582[UP5];16-21,567-562[UP3]	......((((((((((((((.&.))))))))))))))......	ACCUAAUUGAAUAUAAACGAC&UUUGUUUAUAUUUAAAUAAAU	4	0.999999999580479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN9139_c0_g1_573_TPlot.pdf
TRINITY_DN9139_c0_g1:574	si_a410	TRINITY_DN9139_c0_g1	563	583	574	-17.80	-12.00	0.674157303370786	9.5	3-16,581-568	1-2,583-582[UP5];17-21,567-563[UP3]	.....((((((((((((((..&..)))))))))))))).....	CCUAAUUGAAUAUAAACGACU&UUUUGUUUAUAUUUAAAUAAA	2	0.999999940690776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9139_c0_g1_574_TPlot.pdf
TRINITY_DN9139_c0_g1:579	si_a405	TRINITY_DN9139_c0_g1	568	588	579	-19.80	-15.10	0.762626262626263	7.5	2-5,587-584;8-21,581-568	1-1,588-588[UP5];6-7,583-582[SIL]	((((((((((((((..((((.&.))))..))))))))))))))	UUGAAUAUAAACGACUCGAUG&AAUUGUUUUGUUUAUAUUUAA	4	0.999865976995964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN9139_c0_g1_579_TPlot.pdf
TRINITY_DN9147_c0_g1:658	si_a853	TRINITY_DN9147_c0_g1	648	667	658	-26.30	-19.80	0.752851711026616	4	1-11,667-657;13-16,656-653;18-21,651-648	12-12,x-x[BULq];17-17,652-652[SIL]	((((.((((-(((((((((((&))))))))))).)))).))))	AAUAUUUGG-UUUCAAGUUGG&CUAACUUGAAAUCCAAUUAUU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a853_TRINITY_DN9147_c0_g1_658_TPlot.pdf
TRINITY_DN914_c0_g1:64	si_s74	TRINITY_DN914_c0_g1	52	73	64	-25.00	-18.10	0.724	7	4-15,70-59;16-21,57-52	1-3,73-71[UP5];x-x,58-58[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	GAAAGGCAAAGAAAAGAAAAGA&CUAUUUUUUUUCUUU-CCUUUC	3	0.999999999738819	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN914_c0_g1_64_TPlot.pdf
TRINITY_DN914_c0_g1:65	si_s73	TRINITY_DN914_c0_g1	53	73	65	-24.00	-16.50	0.6875	4	1-3,73-71;5-16,70-59;17-21,57-53	4-4,x-x[BULq];x-x,58-58[BULt]	(((((.((((((((((((-(((&))).))))))))))))-)))))	AAAGGCAAAGAAAAGAAA-AGA&UCUAUUUUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN914_c0_g1_65_TPlot.pdf
TRINITY_DN9152_c0_g1:222	si_s439	TRINITY_DN9152_c0_g1	210	231	222	-21.50	-14.30	0.665116279069767	3.5	1-15,231-217;16-17,215-214;20-21,211-210	x-x,216-216[BULt];18-19,213-212[SIL]	((..((.(((((((((((((((&)))))))))))))))-))..))	UGGAAUGAUGUAAUAUGUAAUU&AAUUACAUAUUAUAU-AUAACA	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN9152_c0_g1_222_TPlot.pdf
TRINITY_DN9152_c0_g1:223	si_s438	TRINITY_DN9152_c0_g1	212	232	223	-21.20	-14.20	0.669811320754717	6.5	2-16,231-217	1-1,232-232[UP5];17-21,216-212[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GAAUGAUGUAAUAUGUAAUUC&UAAUUACAUAUUAUAUAUAAC	4	0.995331947639531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN9152_c0_g1_223_TPlot.pdf
TRINITY_DN9152_c0_g1:226	si_s435	TRINITY_DN9152_c0_g1	215	239	226	-20.90	-14.80	0.708133971291866	11.5	1-5,239-235;6-19,230-217	x-x,234-231[BULt];20-21,216-215[UP3]	..((((((((((((((....(((((&)))))----))))))))))))))..	UGAUGUAAUAUGUAAUUCAAUGUUG&CAAUA----AUUACAUAUUAUAUAU	3	0.936274157263247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN9152_c0_g1_226_TPlot.pdf
TRINITY_DN9152_c0_g1:227	si_s434	TRINITY_DN9152_c0_g1	216	240	227	-21.50	-16.60	0.772093023255814	10.5	1-6,240-235;7-20,230-217	x-x,234-231[BULt];21-21,216-216[UP3]	.((((((((((((((....((((((&))))))----)))))))))))))).	GAUGUAAUAUGUAAUUCAAUGUUGU&ACAAUA----AUUACAUAUUAUAUA	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s434_TRINITY_DN9152_c0_g1_227_TPlot.pdf
TRINITY_DN9152_c0_g1:228	si_s433	TRINITY_DN9152_c0_g1	217	241	228	-21.10	-16.50	0.781990521327014	10.5	2-7,240-235;8-21,230-217	1-1,241-241[UP5];x-x,234-231[BULt]	((((((((((((((....((((((.&.))))))----))))))))))))))	AUGUAAUAUGUAAUUCAAUGUUGUG&AACAAUA----AUUACAUAUUAUAU	4	0.543610945315094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN9152_c0_g1_228_TPlot.pdf
TRINITY_DN9152_c0_g1:229	si_s432	TRINITY_DN9152_c0_g1	218	242	229	-21.30	-15.30	0.71830985915493	12.5	3-8,240-235;9-21,230-218	1-2,242-241[UP5];x-x,234-231[BULt]	(((((((((((((....((((((..&..))))))----)))))))))))))	UGUAAUAUGUAAUUCAAUGUUGUGU&UAACAAUA----AUUACAUAUUAUA	3	0.892129593982461	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s432_TRINITY_DN9152_c0_g1_229_TPlot.pdf
TRINITY_DN9152_c0_g1:230	si_s431	TRINITY_DN9152_c0_g1	219	240	230	-21.10	-15.40	0.729857819905213	7.5	1-6,240-235;9-21,231-219	7-8,234-232[AILt]	(((((((((((((...((((((&))))))-..)))))))))))))	GUAAUAUGUAAUUCAAUGUUGU&AUAACA-AUAAUUACAUAUUAU	3	0.824650131302518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN9152_c0_g1_230_TPlot.pdf
TRINITY_DN9152_c0_g1:232	si_s429	TRINITY_DN9152_c0_g1	221	242	232	-21.10	-14.80	0.701421800947867	8	1-8,242-235;11-21,231-221	9-10,234-232[AILt]	(((((((((((...((((((((&))))))))-..)))))))))))	AAUAUGUAAUUCAAUGUUGUGU&AUAUAACA-AUAAUUACAUAUU	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN9152_c0_g1_232_TPlot.pdf
TRINITY_DN9152_c0_g1:233	si_s428	TRINITY_DN9152_c0_g1	222	243	233	-21.50	-14.10	0.655813953488372	9	2-9,242-235;12-21,231-222	1-1,243-243[UP5];10-11,234-232[AILt]	((((((((((...((((((((.&.))))))))-..))))))))))	AUAUGUAAUUCAAUGUUGUGUU&UAUAUAACA-AUAAUUACAUAU	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN9152_c0_g1_233_TPlot.pdf
TRINITY_DN9152_c0_g1:786	si_s773	TRINITY_DN9152_c0_g1	775	795	786	-23.10	-15.70	0.67965367965368	12.5	5-17,791-779	1-4,795-792[UP5];18-21,778-775[UP3]	....(((((((((((((....&....)))))))))))))....	UACCAUGGCAAUGGUAAAUUU&UUAAUUACUAUUGCUAUAAAA	3	0.999937263402404	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN9152_c0_g1_786_TPlot.pdf
TRINITY_DN9152_c0_g1:787	si_s772	TRINITY_DN9152_c0_g1	776	796	787	-23.20	-15.70	0.676724137931034	13.5	6-18,791-779	1-5,796-792[UP5];19-21,778-776[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACCAUGGCAAUGGUAAAUUUA&AUUAAUUACUAUUGCUAUAAA	3	0.999929161110442	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN9152_c0_g1_787_TPlot.pdf
TRINITY_DN9152_c0_g2:371	si_s11	TRINITY_DN9152_c0_g2	357	380	371	-23.60	-16.14	0.683898305084746	6.5	2-13,379-368;15-21,363-357	1-1,380-380[UP5];14-14,367-364[AILt]	(((((((....((((((((((((.&.))))))))))))---.)))))))	AUCAAUAAUGAGGUAGUAAUAAGA&ACUUAUUAUUACU---AUAUUGAU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s11_TRINITY_DN9152_c0_g2_371_TPlot.pdf
TRINITY_DN9152_c0_g2:426	si_s31	TRINITY_DN9152_c0_g2	415	435	426	-24.80	-16.60	0.669354838709677	8.5	1-14,435-422	15-21,421-415[UP3]	.......((((((((((((((&)))))))))))))).......	GAUAUCUGGAUUUAGUUGUAA&UUGCAACUAAAUCUUUAAUAA	2	0.827076674066767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN9152_c0_g2_426_TPlot.pdf
TRINITY_DN9152_c0_g2:427	si_s30	TRINITY_DN9152_c0_g2	416	436	427	-24.80	-16.60	0.669354838709677	8.5	2-15,435-422	1-1,436-436[UP5];16-21,421-416[UP3]	......((((((((((((((.&.))))))))))))))......	AUAUCUGGAUUUAGUUGUAAA&AUUGCAACUAAAUCUUUAAUA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s30_TRINITY_DN9152_c0_g2_427_TPlot.pdf
TRINITY_DN9159_c0_g1:128	si_a413	TRINITY_DN9159_c0_g1	117	138	128	-18.40	-12.60	0.684782608695652	7.5	1-7,138-132;8-18,130-120	x-x,131-131[BULt];19-21,119-117[UP3]	...(((((((((((.(((((((&)))))))-)))))))))))...	UUUUUUGUUUAGAUAAUAAGCA&UGUUUAU-AUUUAAAUAAAUAU	4	0.999646387269902	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN9159_c0_g1_128_TPlot.pdf
TRINITY_DN9159_c0_g1:132	si_a410	TRINITY_DN9159_c0_g1	120	141	132	-17.80	-12.70	0.713483146067416	9	4-10,138-132;11-21,130-120	1-3,141-139[UP5];x-x,131-131[BULt]	(((((((((((.(((((((...&...)))))))-)))))))))))	UUUGUUUAGAUAAUAAGCAUUU&UUUUGUUUAU-AUUUAAAUAAA	4	0.999996152107084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9159_c0_g1_132_TPlot.pdf
TRINITY_DN9159_c0_g1:4197	si_s191	TRINITY_DN9159_c0_g1	4188	4206	4197	-26.60	-19.60	0.736842105263158	7	3-10,4204-4197;13-21,4196-4188	1-2,4206-4205[UP5];11-12,x-x[BULq]	(((((((((--((((((((..&..))))))))..)))))))))	UACAUUCCA--AUAAUCGUAA&UAACGAUUAUUUUGGAAUGUA	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s191_TRINITY_DN9159_c0_g1_4197_TPlot.pdf
TRINITY_DN9159_c1_g1:1272	si_a24	TRINITY_DN9159_c1_g1	1261	1281	1272	-24.20	-17.90	0.739669421487603	7	2-19,1280-1263	1-1,1281-1281[UP5];20-21,1262-1261[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CCCUUGGGAUUAAAGAUAGAA&AUUUAUUUUUAGUUCUAAGAC	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a24_TRINITY_DN9159_c1_g1_1272_TPlot.pdf
TRINITY_DN9159_c1_g1:1274	si_a22	TRINITY_DN9159_c1_g1	1263	1283	1274	-23.50	-17.10	0.727659574468085	8.5	4-21,1280-1263	1-3,1283-1281[UP5]	((((((((((((((((((...&...))))))))))))))))))	CUUGGGAUUAAAGAUAGAACG&CUAUUUAUUUUUAGUUCUAAG	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN9159_c1_g1_1274_TPlot.pdf
TRINITY_DN9159_c1_g1:1275	si_a21	TRINITY_DN9159_c1_g1	1264	1284	1275	-24.30	-16.50	0.679012345679012	7.5	1-2,1284-1283;5-21,1280-1264	3-4,1282-1281[SIL]	(((((((((((((((((..((&))..)))))))))))))))))	UUGGGAUUAAAGAUAGAACGG&CCUAUUUAUUUUUAGUUCUAA	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a21_TRINITY_DN9159_c1_g1_1275_TPlot.pdf
TRINITY_DN9159_c1_g1:1382	si_a500	TRINITY_DN9159_c1_g1	1371	1393	1382	-34.40	-22.40	0.651162790697674	9.5	3-9,1391-1385;10-19,1382-1373	1-2,1393-1392[UP5];x-x,1384-1383[BULt];20-21,1372-1371[UP3]	..((((((((((..(((((((..&..)))))))--))))))))))..	GACGAGGAAGACCGGAAAAACUA&UCGUUUUUC--GUCUUCCUUGGA	2	0.999999874847402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN9159_c1_g1_1382_TPlot.pdf
TRINITY_DN9159_c1_g1:1386	si_a498	TRINITY_DN9159_c1_g1	1373	1395	1386	-33.50	-22.00	0.656716417910448	7.5	1-3,1395-1393;5-11,1391-1385;12-21,1382-1373	4-4,1392-1392[SIL];x-x,1384-1383[BULt]	((((((((((..(((((((.(((&))).)))))))--))))))))))	CGAGGAAGACCGGAAAAACUAUA&UGUCGUUUUUC--GUCUUCCUUG	4	0.999999999999996	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9159_c1_g1_1386_TPlot.pdf
TRINITY_DN9159_c1_g1:1580	si_a784	TRINITY_DN9159_c1_g1	1569	1589	1580	-24.70	-17.20	0.696356275303644	8	3-11,1587-1579;13-21,1577-1569	1-2,1589-1588[UP5];12-12,1578-1578[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AAAAUAGAACAGUGGAAGGAC&ACUCUUCUAUUUUUCUAUUUU	3	0.999999999566753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9159_c1_g1_1580_TPlot.pdf
TRINITY_DN9159_c1_g1:1581	si_a783	TRINITY_DN9159_c1_g1	1570	1590	1581	-24.70	-16.30	0.659919028340081	9	4-12,1587-1579;14-21,1577-1570	1-3,1590-1588[UP5];13-13,1578-1578[SIL]	((((((((.(((((((((...&...))))))))).))))))))	AAAUAGAACAGUGGAAGGACU&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9159_c1_g1_1581_TPlot.pdf
TRINITY_DN9159_c1_g1:1669	si_s15	TRINITY_DN9159_c1_g1	1658	1678	1669	-25.60	-17.00	0.6640625	12.5	6-20,1673-1659	1-5,1678-1674[UP5];21-21,1658-1658[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGUAGUUAAUGUAGUAGAUAC&AUUAUUACUAUAUUGAUUGCA	4	0.998701881807653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s15_TRINITY_DN9159_c1_g1_1669_TPlot.pdf
TRINITY_DN9159_c1_g1:1761	si_s693	TRINITY_DN9159_c1_g1	1749	1770	1761	-23.90	-15.60	0.652719665271967	8	1-11,1770-1760;12-15,1758-1755	x-x,1759-1759[BULt];16-21,1754-1749[UP3]	......((((.(((((((((((&)))))))))))-))))......	UUACCUAUCGAACUAAUUAAAC&GUUUAAUUAGU-CGAUUUAUUA	3	0.999962937540519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s693_TRINITY_DN9159_c1_g1_1761_TPlot.pdf
TRINITY_DN9159_c1_g1:2161	si_a67	TRINITY_DN9159_c1_g1	2152	2170	2161	-27.20	-18.10	0.665441176470588	7	1-10,2170-2161;13-16,2160-2157;19-21,2154-2152	11-12,x-x[BULq];17-18,2156-2155[SIL]	(((..((((--((((((((((&))))))))))..))))..)))	GGAUCGCAA--UGAAAGAAGC&GCUUCUUUCAAAUUGUUUUUC	4	0.999999999968221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN9159_c1_g1_2161_TPlot.pdf
TRINITY_DN9159_c1_g1:2703	si_a356	TRINITY_DN9159_c1_g1	2693	2712	2703	-26.90	-17.80	0.661710037174721	13	4-10,2709-2703;14-21,2700-2693	1-3,2712-2710[UP5];11-13,2702-2701[AILq]	((((((((..-(((((((...&...)))))))...))))))))	AUCCGAUCUU-GUGGAGUAAG&UUAAUUCUAUUUUGAUCGGAU	3	0.999784314679533	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN9159_c1_g1_2703_TPlot.pdf
TRINITY_DN9159_c1_g1:832	si_a18	TRINITY_DN9159_c1_g1	823	842	832	-26.30	-17.60	0.669201520912548	6.5	1-4,842-839;5-13,837-829;16-21,828-823	x-x,838-838[BULt];14-15,x-x[BULq]	((((((--(((((((((.((((&))))-)))))))))..))))))	GAACUA--GAUGGAUAGAGCUU&AAGC-CUAUUUAUUUUUAGUUC	3	0.999969729732114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a18_TRINITY_DN9159_c1_g1_832_TPlot.pdf
TRINITY_DN915_c0_g1:1051	si_a636	TRINITY_DN915_c0_g1	1040	1060	1051	-26.30	-17.20	0.653992395437262	9	1-17,1060-1044	18-21,1043-1040[UP3]	....(((((((((((((((((&)))))))))))))))))....	CAGGAUUUAGAGAAGUUGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999993381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN915_c0_g1_1051_TPlot.pdf
TRINITY_DN9163_c1_g2:765	si_a485	TRINITY_DN9163_c1_g2	747	774	765	-26.60	-20.60	0.774436090225564	17	1-12,774-763;13-21,755-747	x-x,762-756[BULt]	(((((((((.......((((((((((((&))))))))))))-------)))))))))	GAACGGCAUCAACGUCAUUCUGUGUAAC&GUUAUAUAGAAU-------AUGUCGUUU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a485_TRINITY_DN9163_c1_g2_765_TPlot.pdf
TRINITY_DN9166_c0_g2:1091	si_s236	TRINITY_DN9166_c0_g2	1077	1100	1091	-29.60	-19.62	0.662837837837838	17.5	5-10,1096-1091;13-21,1085-1077	1-4,1100-1097[UP5];11-12,1090-1086[AILt]	(((((((((.....((((((....&....))))))---..)))))))))	AGAUGCCUAGCGAGGAUUCCCACU&AUAAGGAAUC---AAUAGGCAUUU	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s236_TRINITY_DN9166_c0_g2_1091_TPlot.pdf
TRINITY_DN9167_c0_g1:680	si_a201	TRINITY_DN9167_c0_g1	670	689	680	-28.60	-19.50	0.681818181818182	7	1-2,689-688;4-12,686-678;14-19,677-672	3-3,687-687[SIL];13-13,x-x[BULq];20-21,671-670[UP3]	..((((((-(((((((((.((&)).))))))))).))))))..	ACGGUCGG-UUAUUAGUGUGC&GUUCACUAAUAAAUCGACUAA	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a201_TRINITY_DN9167_c0_g1_680_TPlot.pdf
TRINITY_DN9169_c0_g2:297	si_s742	TRINITY_DN9169_c0_g2	286	305	297	-31.40	-20.90	0.665605095541401	9	1-5,305-301;7-9,300-298;11-18,296-289	6-6,x-x[BULq];10-10,297-297[SIL];19-21,288-286[UP3]	...((((((((.(((-(((((&))))).))).))))))))...	UAAAAGGUCAGCCUG-UCACC&GGUGAAUAGAUUGACCUUAAA	4	0.948824772416272	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN9169_c0_g2_297_TPlot.pdf
TRINITY_DN916_c0_g1:809	si_a148	TRINITY_DN916_c0_g1	797	818	809	-30.30	-22.80	0.752475247524752	7	2-11,817-808;13-18,806-801;19-20,799-798	1-1,818-818[UP5];12-12,807-807[SIL];x-x,800-800[BULt];21-21,797-797[UP3]	.((.((((((.((((((((((.&.)))))))))).))))))-)).	CUGAACCUUACGACAGCAACGG&UCGUUGUUGUUUUAAGGU-CAA	4	0.552935322373481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN916_c0_g1_809_TPlot.pdf
TRINITY_DN916_c0_g1:810	si_a147	TRINITY_DN916_c0_g1	798	819	810	-30.40	-22.50	0.740131578947368	7	3-12,817-808;14-19,806-801;20-21,799-798	1-2,819-818[UP5];13-13,807-807[SIL];x-x,800-800[BULt]	((.((((((.((((((((((..&..)))))))))).))))))-))	UGAACCUUACGACAGCAACGGA&AUCGUUGUUGUUUUAAGGU-CA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN916_c0_g1_810_TPlot.pdf
TRINITY_DN916_c0_g1:811	si_a146	TRINITY_DN916_c0_g1	800	820	811	-29.70	-21.80	0.734006734006734	8.5	4-13,817-808;15-20,806-801	1-3,820-818[UP5];14-14,807-807[SIL];21-21,800-800[UP3]	.((((((.((((((((((...&...)))))))))).)))))).	AACCUUACGACAGCAACGGAA&AAUCGUUGUUGUUUUAAGGUC	2	0.748804188989705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN916_c0_g1_811_TPlot.pdf
TRINITY_DN916_c0_g1:812	si_a145	TRINITY_DN916_c0_g1	801	821	812	-28.10	-21.80	0.775800711743772	9.5	5-14,817-808;16-21,806-801	1-4,821-818[UP5];15-15,807-807[SIL]	((((((.((((((((((....&....)))))))))).))))))	ACCUUACGACAGCAACGGAAA&UAAUCGUUGUUGUUUUAAGGU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN916_c0_g1_812_TPlot.pdf
TRINITY_DN916_c0_g1:813	si_a144	TRINITY_DN916_c0_g1	802	822	813	-27.40	-20.50	0.748175182481752	11.5	6-15,817-808;17-21,806-802	1-5,822-818[UP5];16-16,807-807[SIL]	(((((.((((((((((.....&.....)))))))))).)))))	CCUUACGACAGCAACGGAAAC&UUAAUCGUUGUUGUUUUAAGG	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN916_c0_g1_813_TPlot.pdf
TRINITY_DN9172_c0_g1:208	si_a291	TRINITY_DN9172_c0_g1	198	217	208	-27.70	-19.20	0.693140794223827	4.5	1-12,217-206;15-21,204-198	13-14,205-205[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	GAAUCUUA-UUGAAUCUAAGU&GCUUGGAUUUAAAAAAGAUUC	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a291_TRINITY_DN9172_c0_g1_208_TPlot.pdf
TRINITY_DN9174_c0_g1:106	si_s83	TRINITY_DN9174_c0_g1	97	115	106	-30.90	-20.70	0.669902912621359	4.5	1-14,115-102;17-20,101-98	15-16,x-x[BULq];21-21,97-97[UP3]	.((((--((((((((((((((&))))))))))))))..)))).	AAAGA--GAGAAAGGAGAGAA&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9174_c0_g1_106_TPlot.pdf
TRINITY_DN9174_c0_g1:166	si_a68	TRINITY_DN9174_c0_g1	155	175	166	-25.40	-17.60	0.692913385826772	7	4-15,172-161;17-21,159-155	1-3,175-173[UP5];16-16,160-160[SIL]	(((((.((((((((((((...&...)))))))))))).)))))	UGAAAUACAAUUUGGAAGUUA&CUUCUUUCAAAUUGUUUUUCA	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN9174_c0_g1_166_TPlot.pdf
TRINITY_DN9175_c0_g1:1173	si_s493	TRINITY_DN9175_c0_g1	1162	1182	1173	-19.80	-13.00	0.656565656565657	4	1-13,1182-1170;15-19,1168-1164	14-14,1169-1169[SIL];20-21,1163-1162[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	CAGUUUUAUUUAUGUUUAAAU&AUUUAAAUAUAAACAAAACAA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN9175_c0_g1_1173_TPlot.pdf
TRINITY_DN917_c0_g1:1121	si_a512	TRINITY_DN917_c0_g1	1110	1130	1121	-37.80	-26.30	0.695767195767196	12	7-21,1124-1110	1-6,1130-1125[UP5]	(((((((((((((((......&......)))))))))))))))	UCCGCCUUACAUUCUGUCCAA&UUCCUUGGAAUGUAAGGCGGA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a512_TRINITY_DN917_c0_g1_1121_TPlot.pdf
TRINITY_DN917_c0_g2:1341	si_a872	TRINITY_DN917_c0_g2	1330	1353	1341	-27.00	-18.54	0.686666666666667	9	1-8,1353-1346;10-21,1341-1330	9-9,1345-1342[AILt]	((((((((((((....((((((((&))))))))---.))))))))))))	UGAUUGCAACUAUAUUAUUUUUAA&UUAAAGAU---UUAGUUGCAAUCA	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN917_c0_g2_1341_TPlot.pdf
TRINITY_DN9181_c1_g1:205	si_a817	TRINITY_DN9181_c1_g1	194	214	205	-30.90	-20.50	0.663430420711974	4.5	1-12,214-203;13-17,201-197;19-20,196-195	x-x,202-202[BULt];18-18,x-x[BULq];21-21,194-194[UP3]	.((-(((((.((((((((((((&))))))))))))-))))).)).	AUC-UUCUUCUUCUUCUUCUUC&GAAGAAGAAGAA-AGGAAAGAA	2	0.988952000161311	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN9181_c1_g1_205_TPlot.pdf
TRINITY_DN9185_c0_g1:2594	si_a406	TRINITY_DN9185_c0_g1	2583	2604	2594	-19.80	-13.60	0.686868686868687	10	1-9,2604-2596;11-18,2593-2586	10-10,2595-2594[AILt];19-21,2585-2583[UP3]	...((((((((..(((((((((&)))))))))-.))))))))...	UGAGAAUGUAACUCAGAGCAAU&AUUGUUUUG-UUUAUAUUUAAA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN9185_c0_g1_2594_TPlot.pdf
TRINITY_DN9185_c0_g1:2860	si_s681	TRINITY_DN9185_c0_g1	2849	2868	2860	-25.10	-16.80	0.669322709163347	5.5	1-6,2868-2863;8-13,2862-2857;15-21,2855-2849	7-7,x-x[BULq];14-14,2856-2856[SIL]	(((((((.((((((-((((((&)))))).)))))).)))))))	UAAUUAGCCUCGUG-UUCUGU&AUAGAAACAUGAGUUUAAUUA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN9185_c0_g1_2860_TPlot.pdf
TRINITY_DN9185_c0_g1:2861	si_s680	TRINITY_DN9185_c0_g1	2850	2869	2861	-25.10	-16.50	0.657370517928287	5.5	1-7,2869-2863;9-14,2862-2857;16-21,2855-2850	8-8,x-x[BULq];15-15,2856-2856[SIL]	((((((.((((((-(((((((&))))))).)))))).))))))	AAUUAGCCUCGUG-UUCUGUA&UAUAGAAACAUGAGUUUAAUU	2	0.90719125670305	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s680_TRINITY_DN9185_c0_g1_2861_TPlot.pdf
TRINITY_DN9185_c0_g1:2870	si_a479	TRINITY_DN9185_c0_g1	2859	2880	2870	-23.00	-15.60	0.678260869565217	8.5	1-4,2880-2877;7-8,2874-2873;9-21,2871-2859	5-6,2876-2875[SIL];x-x,2872-2872[BULt]	(((((((((((((.((..((((&))))..))-)))))))))))))	CGUGUUCUGUAUAGGCUUUAAU&AUUAUUGU-UAUAUAGAAUAUG	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN9185_c0_g1_2870_TPlot.pdf
TRINITY_DN9185_c0_g1:2871	si_a478	TRINITY_DN9185_c0_g1	2860	2881	2871	-21.30	-14.70	0.690140845070423	8.5	1-5,2881-2877;8-9,2874-2873;10-21,2871-2860	6-7,2876-2875[SIL];x-x,2872-2872[BULt]	((((((((((((.((..(((((&)))))..))-))))))))))))	GUGUUCUGUAUAGGCUUUAAUU&AAUUAUUGU-UAUAUAGAAUAU	3	0.998692955016844	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN9185_c0_g1_2871_TPlot.pdf
TRINITY_DN9185_c0_g2:1952	si_s7	TRINITY_DN9185_c0_g2	1941	1961	1952	-21.70	-18.60	0.857142857142857	3	1-14,1961-1948;16-21,1946-1941	15-15,1947-1947[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	AUGUAGAAGUAAUAAGUGAUA&UAUUACUUAUUAUUACUAUAU	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN9185_c0_g2_1952_TPlot.pdf
TRINITY_DN9189_c0_g1:218	si_a75	TRINITY_DN9189_c0_g1	207	227	218	-21.30	-14.10	0.661971830985915	13.5	7-20,221-208	1-6,227-222[UP5];21-21,207-207[UP3]	.((((((((((((((......&......)))))))))))))).	GUAAUGAUGAAGAACCAUCUA&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999999935	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN9189_c0_g1_218_TPlot.pdf
TRINITY_DN9192_c0_g1:379	si_a322	TRINITY_DN9192_c0_g1	370	388	379	-27.00	-18.08	0.66962962962963	6	2-13,387-376;18-21,373-370	1-1,388-388[UP5];14-17,375-374[AILq]	((((..--((((((((((((.&.))))))))))))....))))	AGGAUC--AGAAAUCAUGGAA&AUCCAUGAUUUUUUUAUUCCU	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9192_c0_g1_379_TPlot.pdf
TRINITY_DN9192_c0_g1:382	si_a319	TRINITY_DN9192_c0_g1	371	391	382	-22.40	-14.80	0.660714285714286	8.5	1-3,391-389;5-16,387-376	4-4,388-388[SIL];17-21,375-371[UP3]	.....((((((((((((.(((&))).)))))))))))).....	GGAUCAGAAAUCAUGGAAGAA&UUUAUCCAUGAUUUUUUUAUU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN9192_c0_g1_382_TPlot.pdf
TRINITY_DN9192_c0_g1:866	si_a36	TRINITY_DN9192_c0_g1	851	875	866	-37.80	-24.90	0.658730158730159	12.5	1-11,875-865;12-20,860-852	x-x,864-861[BULt];21-21,851-851[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	GUGGAUCUGCAGAGUGGUCUUGGAA&UUCUAAGACCG----GUAGGUCUAG	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a36_TRINITY_DN9192_c0_g1_866_TPlot.pdf
TRINITY_DN9192_c0_g1:867	si_a35	TRINITY_DN9192_c0_g1	852	876	867	-37.80	-26.00	0.687830687830688	12	1-12,876-865;13-21,860-852	x-x,864-861[BULt]	(((((((((....((((((((((((&))))))))))))----)))))))))	UGGAUCUGCAGAGUGGUCUUGGAAU&GUUCUAAGACCG----GUAGGUCUA	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a35_TRINITY_DN9192_c0_g1_867_TPlot.pdf
TRINITY_DN9192_c0_g1:895	si_s773	TRINITY_DN9192_c0_g1	884	904	895	-23.10	-16.00	0.692640692640693	7.5	3-17,902-888	1-2,904-903[UP5];18-21,887-884[UP3]	....(((((((((((((((..&..)))))))))))))))....	GGCCAUAGUAAUAGUAAUUUG&UUAAUUACUAUUGCUAUAAAA	3	0.999110294267878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s773_TRINITY_DN9192_c0_g1_895_TPlot.pdf
TRINITY_DN9193_c2_g1:613	si_s681	TRINITY_DN9193_c2_g1	602	622	613	-25.10	-17.70	0.705179282868526	4.5	1-9,622-614;11-12,612-611;14-20,609-603	10-10,613-613[SIL];13-13,610-610[SIL];21-21,602-602[UP3]	.(((((((.((.(((((((((&))))))))).)).))))))).	GAGUUAAAGUCCUGUUUCUAU&AUAGAAACAUGAGUUUAAUUA	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s681_TRINITY_DN9193_c2_g1_613_TPlot.pdf
TRINITY_DN9195_c0_g1:1306	si_s846	TRINITY_DN9195_c0_g1	1296	1315	1306	-37.30	-24.40	0.654155495978552	11.5	6-13,1310-1303;15-20,1302-1297	1-5,1315-1311[UP5];14-14,x-x[BULq];21-21,1296-1296[UP3]	.((((((-((((((((.....&.....)))))))).)))))).	AGGGAGU-GACUCGCUGUGUG&AAAGAAGCGAGUCGACUCCUA	4	0.974104797219416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s846_TRINITY_DN9195_c0_g1_1306_TPlot.pdf
TRINITY_DN9195_c0_g1:1975	si_s480	TRINITY_DN9195_c0_g1	1964	1984	1975	-25.00	-16.60	0.664	7.5	1-9,1984-1976;11-18,1974-1967	10-10,1975-1975[SIL];19-21,1966-1964[UP3]	...((((((((.(((((((((&))))))))).))))))))...	UUAUAAGUAGAAAUAGGAUUC&GGAUCCUAUAUUUAUUUAAAU	4	0.999192537436757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s480_TRINITY_DN9195_c0_g1_1975_TPlot.pdf
TRINITY_DN919_c0_g1:1205	si_s82	TRINITY_DN919_c0_g1	1194	1215	1205	-28.90	-19.70	0.681660899653979	8	2-6,1214-1210;8-8,1208-1208;9-21,1206-1194	1-1,1215-1215[UP5];7-7,1209-1209[SIL];x-x,1207-1207[BULt]	(((((((((((((.(.(((((.&.))))).)-)))))))))))))	AAGAAGAAGGAAGUGUAGGAGU&UUUCUUUC-CUUUCUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN919_c0_g1_1205_TPlot.pdf
TRINITY_DN919_c0_g1:403	si_a403	TRINITY_DN919_c0_g1	392	412	403	-22.00	-15.30	0.695454545454545	9.5	2-11,411-402;13-17,400-396	1-1,412-412[UP5];12-12,401-401[SIL];18-21,395-392[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	CUGAAUGAAGAAGACAGUUCA&AGAAUUGUUUUGUUUAUAUUU	4	0.999999898279812	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN919_c0_g1_403_TPlot.pdf
TRINITY_DN919_c0_g1:405	si_a401	TRINITY_DN919_c0_g1	394	414	405	-22.60	-15.30	0.676991150442478	10.5	4-13,411-402;15-19,400-396	1-3,414-412[UP5];14-14,401-401[SIL];20-21,395-394[UP3]	..(((((.((((((((((...&...)))))))))).)))))..	GAAUGAAGAAGACAGUUCAAC&AUAGAAUUGUUUUGUUUAUAU	2	0.99996527576803	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN919_c0_g1_405_TPlot.pdf
TRINITY_DN91_c0_g1:959	si_a415	TRINITY_DN91_c0_g1	947	968	959	-18.10	-11.90	0.657458563535912	5	1-8,968-961;10-15,959-954;16-21,952-947	9-9,960-960[SIL];x-x,953-953[BULt]	((((((.((((((.((((((((&)))))))).))))))-))))))	CUGUGUAUUAUUUCAAUAUGAA&UUUAUAUUUAAAUAA-AUAUAG	4	0.999793251930447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN91_c0_g1_959_TPlot.pdf
TRINITY_DN9200_c0_g1:3023	si_s512	TRINITY_DN9200_c0_g1	3013	3032	3023	-24.80	-16.40	0.661290322580645	9	4-13,3029-3020;16-21,3018-3013	1-3,3032-3030[UP5];14-15,3019-3019[AILq]	((((((.-((((((((((...&...))))))))))..))))))	UCGAGUC-GGAGUAUAGACGG&AAUUCUAUAUUCUUAAUUCGA	2	0.938451964164389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s512_TRINITY_DN9200_c0_g1_3023_TPlot.pdf
TRINITY_DN9200_c0_g1:3568	si_a146	TRINITY_DN9200_c0_g1	3556	3577	3568	-29.70	-19.78	0.665993265993266	12	2-12,3576-3566;18-21,3559-3556	1-1,3577-3577[UP5];13-17,3565-3560[AILt]	((((......(((((((((((.&.)))))))))))-.....))))	GACCAUCAUCGCAGCAGCGGUG&AAUCGUUGUUGU-UUUAAGGUC	4	0.999998448438401	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN9200_c0_g1_3568_TPlot.pdf
TRINITY_DN9202_c0_g1:254	si_a349	TRINITY_DN9202_c0_g1	243	263	254	-21.30	-15.80	0.741784037558685	10	6-21,258-243	1-5,263-259[UP5]	((((((((((((((((.....&.....))))))))))))))))	CGAAGUAGAAUUAAUAAAGCA&GAAAAUAUUAAUUCUAUUUUG	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN9202_c0_g1_254_TPlot.pdf
TRINITY_DN9211_c0_g1:1347	si_a635	TRINITY_DN9211_c0_g1	1336	1356	1347	-26.10	-17.50	0.670498084291188	7.5	1-14,1356-1343;17-18,1340-1339	15-16,1342-1341[SIL];19-21,1338-1336[UP3]	...((..((((((((((((((&))))))))))))))..))...	AAAACCAGAGGAAAUCGACAU&AUGUCGAUUUUUUUGAGUAAU	3	0.999999996974839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN9211_c0_g1_1347_TPlot.pdf
TRINITY_DN9211_c0_g1:1349	si_a633	TRINITY_DN9211_c0_g1	1338	1358	1349	-26.40	-18.30	0.693181818181818	6.5	2-16,1357-1343;19-20,1340-1339	1-1,1358-1358[UP5];17-18,1342-1341[SIL];21-21,1338-1338[UP3]	.((..(((((((((((((((.&.)))))))))))))))..)).	AACCAGAGGAAAUCGACAUGU&UUAUGUCGAUUUUUUUGAGUA	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN9211_c0_g1_1349_TPlot.pdf
TRINITY_DN9223_c0_g1:5171	si_a326	TRINITY_DN9223_c0_g1	5160	5178	5171	-26.20	-20.90	0.797709923664122	7	2-6,5177-5173;9-21,5172-5160	1-1,5178-5178[UP5];7-8,x-x[BULq]	(((((((((((((--(((((.&.)))))..)))))))))))))	GACAAGGAAUGAA--GAUCAG&AUGAUUUUUUUAUUCCUUGUC	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN9223_c0_g1_5171_TPlot.pdf
TRINITY_DN9223_c0_g1:5172	si_a325	TRINITY_DN9223_c0_g1	5161	5179	5172	-25.90	-17.70	0.683397683397683	9	3-7,5177-5173;10-21,5172-5161	1-2,5179-5178[UP5];8-9,x-x[BULq]	((((((((((((--(((((..&..)))))..))))))))))))	ACAAGGAAUGAA--GAUCAGC&CAUGAUUUUUUUAUUCCUUGU	4	0.999937557622403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN9223_c0_g1_5172_TPlot.pdf
TRINITY_DN9225_c0_g1:65	si_a407	TRINITY_DN9225_c0_g1	54	75	65	-19.80	-13.00	0.656565656565657	7	1-2,75-74;4-8,72-68;9-20,66-55	3-3,73-73[SIL];x-x,67-67[BULt];21-21,54-54[UP3]	.((((((((((((.(((((.((&)).)))))-)))))))))))).	CUUUAAAUAUGAAUCAGAAGAA&UUGUUUUG-UUUAUAUUUAAAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN9225_c0_g1_65_TPlot.pdf
TRINITY_DN9225_c0_g1:66	si_a406	TRINITY_DN9225_c0_g1	55	76	66	-19.80	-12.90	0.651515151515151	7	2-3,75-74;5-9,72-68;10-21,66-55	1-1,76-76[UP5];4-4,73-73[SIL];x-x,67-67[BULt]	((((((((((((.(((((.((.&.)).)))))-))))))))))))	UUUAAAUAUGAAUCAGAAGAAA&AUUGUUUUG-UUUAUAUUUAAA	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN9225_c0_g1_66_TPlot.pdf
TRINITY_DN9228_c0_g1:240	si_s580	TRINITY_DN9228_c0_g1	229	249	240	-24.40	-16.00	0.655737704918033	15	8-20,242-230	1-7,249-243[UP5];21-21,229-229[UP3]	.(((((((((((((.......&.......))))))))))))).	GUGUCCGUGAUUUUGUUGAUA&GAAUAAAAAAAUCAUGGAUAA	3	0.920379416474532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s580_TRINITY_DN9228_c0_g1_240_TPlot.pdf
TRINITY_DN9228_c0_g1:555	si_a17	TRINITY_DN9228_c0_g1	544	564	555	-24.30	-16.40	0.674897119341564	8	1-9,564-556;11-17,554-548	10-10,555-555[SIL];18-21,547-544[UP3]	....(((((((.(((((((((&))))))))).)))))))....	UGUAGAAAGUAUAUGGGCUUU&AAAGCCUAUUUAUUUUUAGUU	4	0.99999901475998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN9228_c0_g1_555_TPlot.pdf
TRINITY_DN9229_c0_g1:1019	si_s772	TRINITY_DN9229_c0_g1	1008	1028	1019	-23.20	-15.10	0.650862068965517	10.5	3-17,1026-1012	1-2,1028-1027[UP5];18-21,1011-1008[UP3]	....(((((((((((((((..&..)))))))))))))))....	AUCCUGGUGAUGGUGAUUAUG&AUUAAUUACUAUUGCUAUAAA	3	0.999999928834596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN9229_c0_g1_1019_TPlot.pdf
TRINITY_DN9229_c0_g1:1219	si_s76	TRINITY_DN9229_c0_g1	1208	1228	1219	-23.60	-16.20	0.686440677966102	7	2-16,1227-1213	1-1,1228-1228[UP5];17-21,1212-1208[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAUACAGGAAAGAAAAAAAGG&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9229_c0_g1_1219_TPlot.pdf
TRINITY_DN922_c0_g1:279	si_a183	TRINITY_DN922_c0_g1	267	289	279	-30.10	-19.60	0.651162790697674	11.5	3-6,287-284;7-12,282-277;14-21,274-267	1-2,289-288[UP5];x-x,283-283[BULt];13-13,276-275[AILt]	((((((((..((((((.((((..&..))))-))))))-.))))))))	GGCAGGGGUUGGAUAUAUGUCAU&UAGAUA-AUAUCU-UUCCCUGUU	3	0.998888380498158	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a183_TRINITY_DN922_c0_g1_279_TPlot.pdf
TRINITY_DN922_c0_g1:689	si_a273	TRINITY_DN922_c0_g1	678	697	689	-36.10	-23.50	0.650969529085873	4.5	1-9,697-689;11-17,688-682;19-21,680-678	10-10,x-x[BULq];18-18,681-681[SIL]	(((.(((((((-(((((((((&))))))))).))))))).)))	AGCUGUCUUUU-GUAGGUGUU&AACGCCUACGAAAAGAUCGCU	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a273_TRINITY_DN922_c0_g1_689_TPlot.pdf
TRINITY_DN9230_c0_g1:1401	si_a496	TRINITY_DN9230_c0_g1	1386	1410	1401	-32.40	-21.70	0.669753086419753	12.5	1-11,1410-1400;12-19,1396-1389;20-20,1387-1387	x-x,1399-1397[BULt];x-x,1388-1388[BULt];21-21,1386-1386[UP3]	.(.((((((((...(((((((((((&)))))))))))---))))))))-).	CGUGGAGGCGGAACGAAGCGACAUG&UAUGUCGUUUU---UCGUCUUC-CU	2	0.999999138489842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN9230_c0_g1_1401_TPlot.pdf
TRINITY_DN9230_c0_g1:1402	si_a495	TRINITY_DN9230_c0_g1	1388	1411	1402	-31.90	-21.60	0.677115987460815	12.5	2-12,1410-1400;13-20,1396-1389	1-1,1411-1411[UP5];x-x,1399-1397[BULt];21-21,1388-1388[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	UGGAGGCGGAACGAAGCGACAUGA&AUAUGUCGUUUU---UCGUCUUCC	4	0.999999887220161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN9230_c0_g1_1402_TPlot.pdf
TRINITY_DN9230_c0_g2:1048	si_a252	TRINITY_DN9230_c0_g2	1038	1065	1048	-43.50	-29.20	0.671264367816092	21	1-5,1065-1061;6-14,1052-1044;17-20,1042-1039	x-x,1060-1053[BULt];15-16,1043-1043[AILq];21-21,1038-1038[UP3]	.((((.-(((((((((........(((((&)))))--------)))))))))..)))).	CGCCCG-GAUGCAGUCCUUCACCUGGGGG&CCCCC--------GAUUGUAUCGAGGGCA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a252_TRINITY_DN9230_c0_g2_1048_TPlot.pdf
TRINITY_DN9230_c0_g2:1049	si_a251	TRINITY_DN9230_c0_g2	1039	1066	1049	-43.80	-29.00	0.662100456621005	20.5	1-6,1066-1061;7-15,1052-1044;18-21,1042-1039	x-x,1060-1053[BULt];16-17,1043-1043[AILq]	((((.-(((((((((........((((((&))))))--------)))))))))..))))	GCCCG-GAUGCAGUCCUUCACCUGGGGGG&UCCCCC--------GAUUGUAUCGAGGGC	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a251_TRINITY_DN9230_c0_g2_1049_TPlot.pdf
TRINITY_DN9230_c0_g2:1221	si_s798	TRINITY_DN9230_c0_g2	1211	1230	1221	-29.30	-21.20	0.723549488054608	7	1-5,1230-1226;7-10,1224-1221;12-21,1220-1211	6-6,1225-1225[SIL];11-11,x-x[BULq]	((((((((((-((((.(((((&))))).)))).))))))))))	GUGACGGAGA-AGAGCACGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.853856578548349	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN9230_c0_g2_1221_TPlot.pdf
TRINITY_DN9230_c0_g2:1380	si_a449	TRINITY_DN9230_c0_g2	1369	1389	1380	-25.70	-16.90	0.657587548638132	7	1-6,1389-1384;8-16,1382-1374	7-7,1383-1383[SIL];17-21,1373-1369[UP3]	.....(((((((((.((((((&)))))).))))))))).....	AGAACAACAACAAUCAUCUCA&UGAGAUAAUUGUUGUUAUAUA	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN9230_c0_g2_1380_TPlot.pdf
TRINITY_DN9230_c0_g2:1381	si_a448	TRINITY_DN9230_c0_g2	1370	1390	1381	-25.50	-16.90	0.662745098039216	7	2-7,1389-1384;9-17,1382-1374	1-1,1390-1390[UP5];8-8,1383-1383[SIL];18-21,1373-1370[UP3]	....(((((((((.((((((.&.)))))).)))))))))....	GAACAACAACAAUCAUCUCAC&AUGAGAUAAUUGUUGUUAUAU	2	0.996440394024423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN9230_c0_g2_1381_TPlot.pdf
TRINITY_DN9230_c0_g2:1383	si_a446	TRINITY_DN9230_c0_g2	1372	1392	1383	-25.50	-16.90	0.662745098039216	9	4-9,1389-1384;11-19,1382-1374	1-3,1392-1390[UP5];10-10,1383-1383[SIL];20-21,1373-1372[UP3]	..(((((((((.((((((...&...)))))).)))))))))..	ACAACAACAAUCAUCUCACUA&AUAUGAGAUAAUUGUUGUUAU	4	0.999718217250498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN9230_c0_g2_1383_TPlot.pdf
TRINITY_DN9230_c0_g2:2070	si_a628	TRINITY_DN9230_c0_g2	2059	2079	2070	-27.10	-18.00	0.664206642066421	10.5	1-12,2079-2068;15-17,2065-2063	13-14,2067-2066[SIL];18-21,2062-2059[UP3]	....(((..((((((((((((&))))))))))))..)))....	GCCCGAACAGACGUGGUGCGC&GCGUAUUAUGUCGAUUUUUUU	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN9230_c0_g2_2070_TPlot.pdf
TRINITY_DN9230_c0_g2:2543	si_s79	TRINITY_DN9230_c0_g2	2532	2552	2543	-26.20	-17.40	0.66412213740458	12	4-17,2549-2536	1-3,2552-2550[UP5];18-21,2535-2532[UP3]	....((((((((((((((...&...))))))))))))))....	UCCCAGAAAGGAGGGAAGCUG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9230_c0_g2_2543_TPlot.pdf
TRINITY_DN9230_c0_g2:2544	si_s78	TRINITY_DN9230_c0_g2	2533	2553	2544	-26.20	-17.40	0.66412213740458	13	5-18,2549-2536	1-4,2553-2550[UP5];19-21,2535-2533[UP3]	...((((((((((((((....&....))))))))))))))...	CCCAGAAAGGAGGGAAGCUGC&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9230_c0_g2_2544_TPlot.pdf
TRINITY_DN9230_c0_g2:2546	si_s76	TRINITY_DN9230_c0_g2	2535	2555	2546	-23.60	-17.40	0.73728813559322	15	7-20,2549-2536	1-6,2555-2550[UP5];21-21,2535-2535[UP3]	.((((((((((((((......&......)))))))))))))).	CAGAAAGGAGGGAAGCUGCGU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9230_c0_g2_2546_TPlot.pdf
TRINITY_DN9230_c0_g2:2547	si_s75	TRINITY_DN9230_c0_g2	2536	2556	2547	-24.00	-17.40	0.725	15.5	8-21,2549-2536	1-7,2556-2550[UP5]	((((((((((((((.......&.......))))))))))))))	AGAAAGGAGGGAAGCUGCGUU&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9230_c0_g2_2547_TPlot.pdf
TRINITY_DN9230_c0_g2:63	si_s535	TRINITY_DN9230_c0_g2	51	73	63	-28.60	-18.60	0.65034965034965	10	1-4,73-70;5-16,68-57;17-17,55-55	x-x,69-69[BULt];x-x,56-56[BULt];18-21,54-51[UP3]	....(.((((((((((((.((((&))))-))))))))))))-)....	UGAGGUAUCGGAUCGAGAUGUGA&UCAU-UUUUGAUCCGAU-CAAAA	4	0.998986705034481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN9230_c0_g2_63_TPlot.pdf
TRINITY_DN9230_c0_g2:778	si_s368	TRINITY_DN9230_c0_g2	767	788	778	-40.10	-28.00	0.698254364089775	9	1-4,788-785;6-19,782-769	5-5,784-783[AILt];20-21,768-767[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	CGAUGCGGGCGGUCGGCAUCGA&UUGA-ACCGAUCGCUCGCGUGU	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s368_TRINITY_DN9230_c0_g2_778_TPlot.pdf
TRINITY_DN9230_c0_g2:779	si_s367	TRINITY_DN9230_c0_g2	768	789	779	-39.40	-28.00	0.710659898477157	9	2-5,788-785;7-20,782-769	1-1,789-789[UP5];6-6,784-783[AILt];21-21,768-768[UP3]	.((((((((((((((..((((.&.))))-.)))))))))))))).	GAUGCGGGCGGUCGGCAUCGAG&AUUGA-ACCGAUCGCUCGCGUG	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s367_TRINITY_DN9230_c0_g2_779_TPlot.pdf
TRINITY_DN9230_c0_g2:780	si_s366	TRINITY_DN9230_c0_g2	769	790	780	-39.70	-27.50	0.692695214105793	10	3-6,788-785;8-21,782-769	1-2,790-789[UP5];7-7,784-783[AILt]	((((((((((((((..((((..&..))))-.))))))))))))))	AUGCGGGCGGUCGGCAUCGAGG&GAUUGA-ACCGAUCGCUCGCGU	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s366_TRINITY_DN9230_c0_g2_780_TPlot.pdf
TRINITY_DN9230_c1_g1:144	si_a785	TRINITY_DN9230_c1_g1	133	153	144	-25.90	-18.90	0.72972972972973	10.5	1-15,153-139	16-21,138-133[UP3]	......(((((((((((((((&)))))))))))))))......	UGACUAGGAGAAAUGGAGGGG&CUCUUCUAUUUUUCUAUUUUC	3	0.999987065168248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9230_c1_g1_144_TPlot.pdf
TRINITY_DN9230_c1_g1:147	si_a782	TRINITY_DN9230_c1_g1	136	156	147	-26.40	-19.10	0.723484848484849	12	4-18,153-139	1-3,156-154[UP5];19-21,138-136[UP3]	...(((((((((((((((...&...)))))))))))))))...	CUAGGAGAAAUGGAGGGGGAC&CAACUCUUCUAUUUUUCUAUU	3	0.995027793620448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN9230_c1_g1_147_TPlot.pdf
TRINITY_DN9230_c1_g1:148	si_a781	TRINITY_DN9230_c1_g1	137	157	148	-27.40	-19.10	0.697080291970803	13	5-19,153-139	1-4,157-154[UP5];20-21,138-137[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAGGAGAAAUGGAGGGGGACA&UCAACUCUUCUAUUUUUCUAU	4	0.997487015324719	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a781_TRINITY_DN9230_c1_g1_148_TPlot.pdf
TRINITY_DN9230_c1_g1:150	si_a779	TRINITY_DN9230_c1_g1	139	159	150	-27.00	-18.60	0.688888888888889	14.5	7-21,153-139	1-6,159-154[UP5]	(((((((((((((((......&......)))))))))))))))	GGAGAAAUGGAGGGGGACAAA&AUUCAACUCUUCUAUUUUUCU	2	0.991804855624767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN9230_c1_g1_150_TPlot.pdf
TRINITY_DN9230_c1_g1:1941	si_a20	TRINITY_DN9230_c1_g1	1928	1950	1941	-26.70	-17.68	0.662172284644195	12.5	2-11,1949-1940;14-20,1935-1929	1-1,1950-1950[UP5];12-13,1939-1936[AILt];21-21,1928-1928[UP3]	.(((((((....((((((((((.&.))))))))))--..))))))).	CGGAACUAUGGUAGUGGAUAGGG&GCCUAUUUAUU--UUUAGUUCUA	3	0.999999893314632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a20_TRINITY_DN9230_c1_g1_1941_TPlot.pdf
TRINITY_DN9230_c1_g1:2249	si_s860	TRINITY_DN9230_c1_g1	2238	2262	2249	-40.50	-26.70	0.659259259259259	10.5	1-4,2262-2259;5-9,2257-2253;10-12,2249-2247;14-21,2245-2238	x-x,2258-2258[BULt];x-x,2252-2250[BULt];13-13,2246-2246[SIL]	((((((((.(((...(((((.((((&))))-)))))---))).))))))))	AAGGCCGGGAGGCAUUCUGGCGAGU&ACUC-CUAGA---CCUACCGGUCUU	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s860_TRINITY_DN9230_c1_g1_2249_TPlot.pdf
TRINITY_DN9230_c1_g5:66	si_s281	TRINITY_DN9230_c1_g5	55	74	66	-35.10	-26.20	0.746438746438746	6	1-3,74-72;5-14,71-62;16-21,60-55	4-4,x-x[BULq];15-15,61-61[SIL]	((((((.((((((((((-(((&))).)))))))))).))))))	GUCGAUGAGGCGUGUUG-GUC&GACAUAAUACGCCUAGUCGAU	4	0.0600485717138426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s281_TRINITY_DN9230_c1_g5_66_TPlot.pdf
TRINITY_DN9237_c0_g1:3482	si_s872	TRINITY_DN9237_c0_g1	3471	3491	3482	-30.70	-20.10	0.654723127035831	10	2-8,3490-3484;10-16,3482-3476	1-1,3491-3491[UP5];9-9,3483-3483[SIL];17-21,3475-3471[UP3]	.....(((((((.(((((((.&.))))))).))))))).....	GGAGCUAGUUCUUGGACUGGA&ACCGGUCUUAGAACUAAAAAU	2	0.839519666787665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s872_TRINITY_DN9237_c0_g1_3482_TPlot.pdf
TRINITY_DN9237_c0_g1:4528	si_a323	TRINITY_DN9237_c0_g1	4518	4537	4528	-26.80	-21.40	0.798507462686567	5.5	2-13,4536-4525;15-21,4524-4518	1-1,4537-4537[UP5];14-14,x-x[BULq]	(((((((-((((((((((((.&.)))))))))))).)))))))	AAGGAGU-AGGAGAUCAUGGU&UCCAUGAUUUUUUUAUUCCUU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN9237_c0_g1_4528_TPlot.pdf
TRINITY_DN9237_c0_g1:4529	si_a322	TRINITY_DN9237_c0_g1	4519	4538	4529	-27.00	-20.50	0.759259259259259	7	3-14,4536-4525;16-21,4524-4519	1-2,4538-4537[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	AGGAGU-AGGAGAUCAUGGUU&AUCCAUGAUUUUUUUAUUCCU	2	0.648475722541503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9237_c0_g1_4529_TPlot.pdf
TRINITY_DN9237_c0_g1:4530	si_a321	TRINITY_DN9237_c0_g1	4520	4539	4530	-26.70	-19.20	0.719101123595506	8.5	4-15,4536-4525;17-21,4524-4520	1-3,4539-4537[UP5];16-16,x-x[BULq]	(((((-((((((((((((...&...)))))))))))).)))))	GGAGU-AGGAGAUCAUGGUUG&UAUCCAUGAUUUUUUUAUUCC	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9237_c0_g1_4530_TPlot.pdf
TRINITY_DN9237_c0_g1:4711	si_a771	TRINITY_DN9237_c0_g1	4699	4720	4711	-29.40	-20.40	0.693877551020408	5	1-12,4720-4709;14-15,4707-4706;16-21,4704-4699	13-13,4708-4708[SIL];x-x,4705-4705[BULt]	((((((.((.((((((((((((&)))))))))))).))-))))))	AGAAGAUGUGGAGUUAGUCAAA&UUUGAUUGAUUCAAC-UCUUCU	2	0.74565823162359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a771_TRINITY_DN9237_c0_g1_4711_TPlot.pdf
TRINITY_DN9237_c0_g1:4712	si_a770	TRINITY_DN9237_c0_g1	4700	4721	4712	-28.70	-19.30	0.672473867595819	6	2-13,4720-4709;15-16,4707-4706;17-21,4704-4700	1-1,4721-4721[UP5];14-14,4708-4708[SIL];x-x,4705-4705[BULt]	(((((.((.((((((((((((.&.)))))))))))).))-)))))	GAAGAUGUGGAGUUAGUCAAAU&UUUUGAUUGAUUCAAC-UCUUC	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a770_TRINITY_DN9237_c0_g1_4712_TPlot.pdf
TRINITY_DN9237_c0_g1:4754	si_s49	TRINITY_DN9237_c0_g1	4743	4763	4754	-29.30	-19.10	0.651877133105802	6.5	1-12,4763-4752;14-16,4750-4748;18-20,4746-4744	13-13,4751-4751[SIL];17-17,4747-4747[SIL];21-21,4743-4743[UP3]	.(((.(((.((((((((((((&)))))))))))).))).))).	AGCUUACUGGAAGUCUAGUUG&UAAUUGGAUUUCAAGUUAGCA	2	0.95546755294484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s49_TRINITY_DN9237_c0_g1_4754_TPlot.pdf
TRINITY_DN9238_c0_g1:108	si_a898	TRINITY_DN9238_c0_g1	96	117	108	-20.50	-15.10	0.736585365853659	2.5	1-14,117-104;16-21,101-96	15-15,103-102[AILt]	((((((..((((((((((((((&))))))))))))))-.))))))	UUUUAUUUUUACUUAUUAUUAU&GUAAUAAUAAGUAA-UAUAAAA	2	0.531966347594929	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a898_TRINITY_DN9238_c0_g1_108_TPlot.pdf
TRINITY_DN923_c0_g1:1124	si_s519	TRINITY_DN923_c0_g1	1112	1133	1124	-24.40	-16.90	0.692622950819672	8.5	3-16,1131-1118;18-21,1115-1112	1-2,1133-1132[UP5];17-17,1117-1116[AILt]	((((..((((((((((((((..&..))))))))))))))-.))))	GAUGCUUUUCGGAUUGGGAAGA&UAUUCUUAAUUCGAAA-UCAUU	3	0.7853042652945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN923_c0_g1_1124_TPlot.pdf
TRINITY_DN923_c0_g1:1125	si_a799	TRINITY_DN923_c0_g1	1112	1134	1125	-32.50	-21.20	0.652307692307692	11	4-15,1131-1120;16-18,1117-1115	1-3,1134-1132[UP5];x-x,1119-1118[BULt];19-21,1114-1112[UP3]	...(((..((((((((((((...&...))))))))))))--)))...	GAUGCUUUUCGGAUUGGGAAGAC&UAUUUUCCAAUCCGA--AGCGAA	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a799_TRINITY_DN923_c0_g1_1125_TPlot.pdf
TRINITY_DN923_c0_g1:1273	si_s812	TRINITY_DN923_c0_g1	1262	1283	1273	-26.40	-17.40	0.659090909090909	9.5	1-6,1283-1278;7-15,1276-1268	x-x,1277-1277[BULt];16-21,1267-1262[UP3]	......(((((((((.((((((&))))))-)))))))))......	UUGAACAGGAAAAGGCUGACGA&UCGUUA-CCUUUUCUUAAUAAU	4	0.99999805292576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN923_c0_g1_1273_TPlot.pdf
TRINITY_DN923_c0_g1:1274	si_s811	TRINITY_DN923_c0_g1	1263	1284	1274	-26.40	-18.30	0.693181818181818	8.5	1-7,1284-1278;8-16,1276-1268	x-x,1277-1277[BULt];17-21,1267-1263[UP3]	.....(((((((((.(((((((&)))))))-))))))))).....	UGAACAGGAAAAGGCUGACGAA&UUCGUUA-CCUUUUCUUAAUAA	3	0.998953881780836	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN923_c0_g1_1274_TPlot.pdf
TRINITY_DN923_c0_g1:1275	si_s810	TRINITY_DN923_c0_g1	1264	1285	1275	-27.90	-18.50	0.663082437275986	8.5	2-8,1284-1278;9-17,1276-1268	1-1,1285-1285[UP5];x-x,1277-1277[BULt];18-21,1267-1264[UP3]	....(((((((((.(((((((.&.)))))))-)))))))))....	GAACAGGAAAAGGCUGACGAAA&CUUCGUUA-CCUUUUCUUAAUA	4	0.999999996762013	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN923_c0_g1_1275_TPlot.pdf
TRINITY_DN923_c0_g1:1303	si_a328	TRINITY_DN923_c0_g1	1292	1313	1303	-30.10	-20.12	0.66843853820598	11	1-9,1313-1305;13-20,1300-1293	10-12,1304-1301[AILt];21-21,1292-1292[UP3]	.((((((((....(((((((((&)))))))))-...)))))))).	AGGACAAGGCUAAAGAGAAAUC&GAUUUUUUU-AUUCCUUGUCCC	4	0.999998279742994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a328_TRINITY_DN923_c0_g1_1303_TPlot.pdf
TRINITY_DN923_c0_g1:1343	si_s71	TRINITY_DN923_c0_g1	1331	1352	1343	-25.70	-18.10	0.704280155642023	9.5	1-1,1352-1352;4-10,1349-1343;11-21,1341-1331	2-3,1351-1350[SIL];x-x,1342-1342[BULt]	(((((((((((.(((((((..(&)..)))))))-)))))))))))	AGGAAGGAAAGUAAGAUGGUUG&CUUCUAUUUU-UUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN923_c0_g1_1343_TPlot.pdf
TRINITY_DN923_c0_g1:214	si_s809	TRINITY_DN923_c0_g1	203	223	214	-28.50	-19.80	0.694736842105263	7.5	1-2,223-222;4-16,220-208	3-3,221-221[SIL];17-21,207-203[UP3]	.....(((((((((((((.((&)).))))))))))))).....	UUACUGAAAAGGUAACGAUGG&UCUUCGUUACCUUUUCUUAAU	3	0.999952746301962	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN923_c0_g1_214_TPlot.pdf
TRINITY_DN923_c0_g1:219	si_s804	TRINITY_DN923_c0_g1	208	228	219	-27.90	-19.40	0.695340501792115	12	6-7,223-222;9-21,220-208	1-5,228-224[UP5];8-8,221-221[SIL]	(((((((((((((.((.....&.....)).)))))))))))))	GAAAAGGUAACGAUGGCUACA&UUUUAUCUUCGUUACCUUUUC	4	0.999984338489873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN923_c0_g1_219_TPlot.pdf
TRINITY_DN9249_c0_g1:2753	si_a410	TRINITY_DN9249_c0_g1	2742	2762	2753	-17.80	-13.00	0.730337078651685	6.5	2-9,2761-2754;11-19,2752-2744	1-1,2762-2762[UP5];10-10,2753-2753[SIL];20-21,2743-2742[UP3]	..(((((((((.((((((((.&.)))))))).)))))))))..	ACUAUUUAGAUUUAGACAAAU&UUUUGUUUAUAUUUAAAUAAA	2	0.994893122432696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9249_c0_g1_2753_TPlot.pdf
TRINITY_DN924_c0_g1:1150	si_a19	TRINITY_DN924_c0_g1	1139	1159	1150	-27.00	-18.60	0.688888888888889	9	1-5,1159-1155;7-18,1153-1142	6-6,1154-1154[SIL];19-21,1141-1139[UP3]	...((((((((((((.(((((&))))).))))))))))))...	AUUGCUGAAGAUGAGCAGGCU&AGCCUAUUUAUUUUUAGUUCU	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN924_c0_g1_1150_TPlot.pdf
TRINITY_DN924_c0_g1:1449	si_a768	TRINITY_DN924_c0_g1	1438	1458	1449	-28.40	-19.50	0.686619718309859	12.5	5-20,1454-1439	1-4,1458-1455[UP5];21-21,1438-1438[UP3]	.((((((((((((((((....&....)))))))))))))))).	UGAGUUGGAUCGGUUAGCUAG&GUUUUUGAUUGAUUCAACUCU	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN924_c0_g1_1449_TPlot.pdf
TRINITY_DN9258_c0_g1:23	si_a350	TRINITY_DN9258_c0_g1	12	32	23	-20.30	-14.30	0.704433497536946	14	8-21,25-12	1-7,32-26[UP5]	((((((((((((((.......&.......))))))))))))))	UCGAAGUAGAAUUAUGCAUUA&AAAAUAUUAAUUCUAUUUUGA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN9258_c0_g1_23_TPlot.pdf
TRINITY_DN925_c0_g2:3873	si_s806	TRINITY_DN925_c0_g2	3861	3882	3873	-28.60	-18.70	0.653846153846154	7	1-7,3882-3876;9-13,3874-3870;14-20,3868-3862	8-8,3875-3875[SIL];x-x,3869-3869[BULt];21-21,3861-3861[UP3]	.(((((((.(((((.(((((((&))))))).)))))-))))))).	UAGGAGAGAGUGACAAAGAUGA&UUAUCUUCGUUAC-CUUUUCUU	4	0.999999999999992	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN925_c0_g2_3873_TPlot.pdf
TRINITY_DN925_c0_g2:4360	si_a831	TRINITY_DN925_c0_g2	4349	4369	4360	-23.40	-17.90	0.764957264957265	5	1-16,4369-4354	17-21,4353-4349[UP3]	.....((((((((((((((((&)))))))))))))))).....	UUUUACUAUUUUUUUUCUUUC&GAAAGAAAAAAAAUAGAAGUU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a831_TRINITY_DN925_c0_g2_4360_TPlot.pdf
TRINITY_DN925_c0_g2:4361	si_a830	TRINITY_DN925_c0_g2	4350	4370	4361	-25.80	-18.10	0.701550387596899	5	2-17,4369-4354	1-1,4370-4370[UP5];18-21,4353-4350[UP3]	....((((((((((((((((.&.))))))))))))))))....	UUUACUAUUUUUUUUCUUUCG&GGAAAGAAAAAAAAUAGAAGU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a830_TRINITY_DN925_c0_g2_4361_TPlot.pdf
TRINITY_DN925_c0_g2:4363	si_a828	TRINITY_DN925_c0_g2	4352	4372	4363	-24.10	-18.10	0.75103734439834	7	4-19,4369-4354	1-3,4372-4370[UP5];20-21,4353-4352[UP3]	..((((((((((((((((...&...))))))))))))))))..	UACUAUUUUUUUUCUUUCGAC&AAGGAAAGAAAAAAAAUAGAA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a828_TRINITY_DN925_c0_g2_4363_TPlot.pdf
TRINITY_DN925_c0_g2:511	si_s75	TRINITY_DN925_c0_g2	499	520	511	-24.00	-16.10	0.670833333333333	7	1-11,520-510;12-19,508-501	x-x,509-509[BULt];20-21,500-499[UP3]	..((((((((.(((((((((((&)))))))))))-))))))))..	GAAAAGGAGGCGAAAAAGAAUG&UAUUUUUUUUC-UUUCCUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN925_c0_g2_511_TPlot.pdf
TRINITY_DN925_c0_g2:6813	si_a410	TRINITY_DN925_c0_g2	6800	6822	6813	-17.80	-12.80	0.719101123595506	6.5	1-12,6822-6811;14-21,6807-6800	13-13,6810-6808[AILt]	((((((((...((((((((((((&))))))))))))--.))))))))	UUUGUUUACCUGUAUAAACAAAA&UUUUGUUUAUAU--UUAAAUAAA	4	0.999973213247575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN925_c0_g2_6813_TPlot.pdf
TRINITY_DN925_c0_g2:6819	si_a404	TRINITY_DN925_c0_g2	6808	6828	6819	-21.70	-14.70	0.67741935483871	7	1-4,6828-6825;6-18,6823-6811	5-5,6824-6824[SIL];19-21,6810-6808[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	CCUGUAUAAACAAAACCGUUU&GAAUUGUUUUGUUUAUAUUUA	4	0.999999999999688	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN925_c0_g2_6819_TPlot.pdf
TRINITY_DN925_c0_g2:6821	si_a402	TRINITY_DN925_c0_g2	6810	6830	6821	-22.40	-14.90	0.665178571428572	8.5	3-6,6828-6825;8-20,6823-6811	1-2,6830-6829[UP5];7-7,6824-6824[SIL];21-21,6810-6810[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	UGUAUAAACAAAACCGUUUAU&UAGAAUUGUUUUGUUUAUAUU	4	0.99999999996887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN925_c0_g2_6821_TPlot.pdf
TRINITY_DN925_c0_g2:6822	si_a401	TRINITY_DN925_c0_g2	6811	6831	6822	-22.60	-14.90	0.65929203539823	9.5	4-7,6828-6825;9-21,6823-6811	1-3,6831-6829[UP5];8-8,6824-6824[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GUAUAAACAAAACCGUUUAUA&AUAGAAUUGUUUUGUUUAUAU	3	0.999999999992742	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN925_c0_g2_6822_TPlot.pdf
TRINITY_DN925_c0_g2:7058	si_s704	TRINITY_DN925_c0_g2	7047	7067	7058	-32.80	-22.10	0.673780487804878	9	1-1,7067-7067;3-3,7065-7065;6-21,7062-7047	2-2,7066-7066[SIL];4-5,7064-7063[SIL]	((((((((((((((((..(.(&).)..))))))))))))))))	UCUUUGUUCGCUAGUAUUUGG&CGAUUUAUUAGUGAACAGGGA	3	0.643861975529455	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s704_TRINITY_DN925_c0_g2_7058_TPlot.pdf
TRINITY_DN9261_c0_g1:607	si_a642	TRINITY_DN9261_c0_g1	595	615	607	-25.90	-17.70	0.683397683397683	7.5	2-8,614-608;10-16,607-601;17-21,599-595	1-1,615-615[UP5];9-9,x-x[BULq];x-x,600-600[BULt]	(((((.(((((((-(((((((.&.))))))).)))))))-)))))	CCGAUCAUGUUGC-CAGGAAAU&UUUUUUUGAGUAAUAU-AUCGG	1	0.0506611918768023	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN9261_c0_g1_607_TPlot.pdf
TRINITY_DN9267_c0_g1:3390	si_a572	TRINITY_DN9267_c0_g1	3380	3399	3390	-30.40	-21.40	0.703947368421053	7	1-4,3399-3396;6-10,3394-3390;12-20,3389-3381	5-5,3395-3395[SIL];11-11,x-x[BULq];21-21,3380-3380[UP3]	.(((((((((-(((((.((((&)))).))))).))))))))).	AGUUACAAAC-UGCGGGUCAC&GUGAAUCGUAUGUUUGUAACA	4	0.472661768032816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a572_TRINITY_DN9267_c0_g1_3390_TPlot.pdf
TRINITY_DN9267_c0_g1:559	si_a785	TRINITY_DN9267_c0_g1	538	568	559	-25.90	-17.90	0.691119691119691	24	1-12,568-557;13-20,546-539	x-x,556-547[BULt];21-21,538-538[UP3]	.((((((((..........((((((((((((&))))))))))))----------)))))))).	AGAGAUAGAGAUCGCGAUAGAGAUAGAAGAG&CUCUUCUAUUUU----------UCUAUUUUC	2	0.999999794102241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9267_c0_g1_559_TPlot.pdf
TRINITY_DN9267_c0_g1:560	si_a784	TRINITY_DN9267_c0_g1	539	569	560	-24.70	-17.70	0.716599190283401	13.5	2-13,568-557;14-21,546-539	1-1,569-569[UP5];x-x,556-547[BULt]	((((((((..........((((((((((((.&.))))))))))))----------))))))))	GAGAUAGAGAUCGCGAUAGAGAUAGAAGAGA&ACUCUUCUAUUUU----------UCUAUUUU	2	0.999901218111531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9267_c0_g1_560_TPlot.pdf
TRINITY_DN9267_c0_g1:561	si_a783	TRINITY_DN9267_c0_g1	552	570	561	-24.70	-17.20	0.696356275303644	7.5	3-12,568-559;15-20,558-553	1-2,570-569[UP5];13-14,x-x[BULq];21-21,552-552[UP3]	.((((((--((((((((((..&..))))))))))..)))))).	CGAUAGA--GAUAGAAGAGAU&AACUCUUCUAUUUUUCUAUUU	3	0.999999991842697	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9267_c0_g1_561_TPlot.pdf
TRINITY_DN9267_c0_g1:562	si_a782	TRINITY_DN9267_c0_g1	553	571	562	-26.40	-17.20	0.651515151515151	8	4-13,568-559;16-21,558-553	1-3,571-569[UP5];14-15,x-x[BULq]	((((((--((((((((((...&...))))))))))..))))))	GAUAGA--GAUAGAAGAGAUA&CAACUCUUCUAUUUUUCUAUU	3	0.999999999972391	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a782_TRINITY_DN9267_c0_g1_562_TPlot.pdf
TRINITY_DN9267_c0_g1:696	si_s68	TRINITY_DN9267_c0_g1	685	705	696	-23.10	-15.10	0.653679653679654	9.5	4-8,702-698;10-21,696-685	1-3,705-703[UP5];9-9,697-697[SIL]	((((((((((((.(((((...&...))))).))))))))))))	AAAGAAGAAGAGCAGAAGAAA&CAACUUCUAUUUUUUUUCUUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9267_c0_g1_696_TPlot.pdf
TRINITY_DN9267_c0_g1:747	si_a784	TRINITY_DN9267_c0_g1	736	755	747	-24.70	-16.60	0.672064777327935	9	2-5,754-751;7-18,750-739	1-1,755-755[UP5];6-6,x-x[BULq];19-21,738-736[UP3]	...((((((((((((-((((.&.)))).))))))))))))...	CGCAUAGAAAGGUGG-AGAGC&ACUCUUCUAUUUUUCUAUUUU	2	0.999999999669543	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9267_c0_g1_747_TPlot.pdf
TRINITY_DN9267_c0_g1:748	si_a783	TRINITY_DN9267_c0_g1	737	756	748	-24.70	-16.60	0.672064777327935	10	3-6,754-751;8-19,750-739	1-2,756-755[UP5];7-7,x-x[BULq];20-21,738-737[UP3]	..((((((((((((-((((..&..)))).))))))))))))..	GCAUAGAAAGGUGG-AGAGCA&AACUCUUCUAUUUUUCUAUUU	2	0.999999997325737	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9267_c0_g1_748_TPlot.pdf
TRINITY_DN9267_c0_g1:758	si_s79	TRINITY_DN9267_c0_g1	745	767	758	-26.20	-17.30	0.66030534351145	6.5	1-11,767-757;12-17,754-749;19-21,747-745	x-x,756-755[BULt];18-18,748-748[SIL]	(((.((((((..(((((((((((&)))))))))))--)))))).)))	AGGUGGAGAGCAGAAAGAAAAAA&UUUUUUCUUUC--CUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9267_c0_g1_758_TPlot.pdf
TRINITY_DN9267_c0_g1:760	si_s77	TRINITY_DN9267_c0_g1	749	769	760	-25.50	-17.80	0.698039215686275	4	1-13,769-757;16-21,754-749	14-15,756-755[SIL]	((((((..(((((((((((((&)))))))))))))..))))))	GGAGAGCAGAAAGAAAAAAGA&UUUUUUUUCUUUCCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9267_c0_g1_760_TPlot.pdf
TRINITY_DN9267_c0_g1:761	si_s76	TRINITY_DN9267_c0_g1	748	770	761	-23.60	-17.00	0.720338983050847	6	2-14,769-757;15-20,754-749	1-1,770-770[UP5];x-x,756-755[BULt];21-21,748-748[UP3]	.((((((..(((((((((((((.&.)))))))))))))--)))))).	UGGAGAGCAGAAAGAAAAAAGAA&AUUUUUUUUCUUUC--CUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9267_c0_g1_761_TPlot.pdf
TRINITY_DN9267_c0_g1:762	si_s75	TRINITY_DN9267_c0_g1	749	771	762	-24.00	-17.00	0.708333333333333	7	3-15,769-757;16-21,754-749	1-2,771-770[UP5];x-x,756-755[BULt]	((((((..(((((((((((((..&..)))))))))))))--))))))	GGAGAGCAGAAAGAAAAAAGAAA&UAUUUUUUUUCUUUC--CUUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9267_c0_g1_762_TPlot.pdf
TRINITY_DN9267_c0_g1:763	si_s74	TRINITY_DN9267_c0_g1	750	772	763	-25.00	-16.90	0.676	5.5	1-2,772-771;4-16,769-757;17-21,754-750	3-3,770-770[SIL];x-x,756-755[BULt]	(((((..(((((((((((((.((&)).)))))))))))))--)))))	GAGAGCAGAAAGAAAAAAGAAAG&CUAUUUUUUUUCUUUC--CUUUC	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9267_c0_g1_763_TPlot.pdf
TRINITY_DN9267_c0_g1:768	si_s69	TRINITY_DN9267_c0_g1	757	777	768	-23.40	-15.40	0.658119658119658	9	4-7,774-771;9-21,769-757	1-3,777-775[UP5];8-8,770-770[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAAAGAAAAAAGAAAGAGCAG&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9267_c0_g1_768_TPlot.pdf
TRINITY_DN9267_c0_g1:824	si_a128	TRINITY_DN9267_c0_g1	813	833	824	-23.20	-15.20	0.655172413793103	8.5	1-13,833-821	14-21,820-813[UP3]	........(((((((((((((&)))))))))))))........	CAGUAAUCCUAUUGCUAUAAG&UUUAUAGCAAUAGUAAUUAAU	3	0.999884847100876	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN9267_c0_g1_824_TPlot.pdf
TRINITY_DN9267_c0_g1:828	si_a124	TRINITY_DN9267_c0_g1	817	839	828	-25.10	-17.10	0.681274900398406	8	1-5,839-835;6-17,832-821	x-x,834-833[BULt];18-21,820-817[UP3]	....((((((((((((..(((((&)))))--))))))))))))....	AAUCCUAUUGCUAUAAGUAACAA&UUGUU--UUAUAGCAAUAGUAAU	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN9267_c0_g1_828_TPlot.pdf
TRINITY_DN9267_c0_g1:829	si_a123	TRINITY_DN9267_c0_g1	818	840	829	-26.60	-17.30	0.650375939849624	8	2-6,839-835;7-18,832-821	1-1,840-840[UP5];x-x,834-833[BULt];19-21,820-818[UP3]	...((((((((((((..(((((.&.)))))--))))))))))))...	AUCCUAUUGCUAUAAGUAACAAA&CUUGUU--UUAUAGCAAUAGUAA	3	0.999915004111309	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN9267_c0_g1_829_TPlot.pdf
TRINITY_DN9269_c0_g1:1401	si_s819	TRINITY_DN9269_c0_g1	1390	1409	1401	-23.00	-15.40	0.669565217391304	7.5	1-9,1409-1401;11-18,1400-1393	10-10,x-x[BULq];19-21,1392-1390[UP3]	...((((((((-(((((((((&))))))))).))))))))...	UAAUUUCGUUG-UAAGAGAAG&CUUUUCUUAAUAAUGAAAAAC	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s819_TRINITY_DN9269_c0_g1_1401_TPlot.pdf
TRINITY_DN9269_c0_g1:1452	si_a787	TRINITY_DN9269_c0_g1	1441	1466	1452	-26.30	-19.62	0.746007604562738	14.5	1-8,1466-1459;10-21,1452-1441	9-9,1458-1453[AILt]	((((((((((((......((((((((&))))))))-----.))))))))))))	UGGAAAAUGGAAUGGCAUGAUAGGAG&CUUCUAUU-----UUUCUAUUUUCCA	3	0.994498157773398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN9269_c0_g1_1452_TPlot.pdf
TRINITY_DN9269_c0_g1:1453	si_a786	TRINITY_DN9269_c0_g1	1442	1467	1453	-26.60	-19.52	0.733834586466165	14.5	1-9,1467-1459;11-21,1452-1442	10-10,1458-1453[AILt]	(((((((((((......(((((((((&)))))))))-----.)))))))))))	GGAAAAUGGAAUGGCAUGAUAGGAGA&UCUUCUAUU-----UUUCUAUUUUCC	4	0.999007407424762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN9269_c0_g1_1453_TPlot.pdf
TRINITY_DN9269_c0_g1:1472	si_a784	TRINITY_DN9269_c0_g1	1457	1481	1472	-24.70	-16.40	0.663967611336032	14	2-10,1480-1472;11-19,1467-1459	1-1,1481-1481[UP5];x-x,1471-1468[BULt];20-21,1458-1457[UP3]	..(((((((((....(((((((((.&.)))))))))----)))))))))..	AUGAUAGGAGAUAUUAUAGAAGGGA&ACUCUUCUAU----UUUUCUAUUUU	2	0.999999999997082	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9269_c0_g1_1472_TPlot.pdf
TRINITY_DN9269_c0_g1:1473	si_a783	TRINITY_DN9269_c0_g1	1458	1482	1473	-24.70	-16.40	0.663967611336032	14.5	3-11,1480-1472;12-20,1467-1459	1-2,1482-1481[UP5];x-x,1471-1468[BULt];21-21,1458-1458[UP3]	.(((((((((....(((((((((..&..)))))))))----))))))))).	UGAUAGGAGAUAUUAUAGAAGGGAA&AACUCUUCUAU----UUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9269_c0_g1_1473_TPlot.pdf
TRINITY_DN9269_c0_g1:347	si_s76	TRINITY_DN9269_c0_g1	336	356	347	-23.60	-16.70	0.707627118644068	16	9-20,348-337	1-8,356-349[UP5];21-21,336-336[UP3]	.((((((((((((........&........)))))))))))).	CAGAAAGGAAAGAUAUACCCC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9269_c0_g1_347_TPlot.pdf
TRINITY_DN9269_c0_g1:540	si_a500	TRINITY_DN9269_c0_g1	529	549	540	-34.40	-24.20	0.703488372093023	8	1-17,549-533	18-21,532-529[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAUCAGGAAGGCGAAGGAUGA&UCGUUUUUCGUCUUCCUUGGA	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN9269_c0_g1_540_TPlot.pdf
TRINITY_DN9270_c0_g1:1497	si_a145	TRINITY_DN9270_c0_g1	1486	1506	1497	-28.10	-19.30	0.686832740213523	9.5	4-16,1503-1491;19-21,1488-1486	1-3,1506-1504[UP5];17-18,1490-1489[SIL]	(((..(((((((((((((...&...)))))))))))))..)))	GCUGCAAGACGACAACGAGCC&UAAUCGUUGUUGUUUUAAGGU	4	0.996973967390841	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN9270_c0_g1_1497_TPlot.pdf
TRINITY_DN9270_c0_g1:1601	si_s216	TRINITY_DN9270_c0_g1	1586	1610	1601	-35.80	-23.40	0.653631284916201	8.5	1-9,1610-1602;11-16,1600-1595;17-20,1590-1587	10-10,1601-1601[SIL];x-x,1594-1591[BULt];21-21,1586-1586[UP3]	.((((....((((((.(((((((((&))))))))).))))))----)))).	CUCACAUCUGUGGUUGCGGACACAA&UUGUGUUCGAAACCGC----GUGAA	3	0.968623630759062	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s216_TRINITY_DN9270_c0_g1_1601_TPlot.pdf
TRINITY_DN9272_c0_g1:1093	si_a628	TRINITY_DN9272_c0_g1	1082	1103	1093	-27.10	-18.60	0.686346863468635	9	1-5,1103-1099;8-19,1095-1084	6-7,1098-1096[AILt];20-21,1083-1082[UP3]	..((((((((((((...(((((&)))))-..))))))))))))..	UUAGAAAUCGACAUUUUUACGU&GCGUA-UUAUGUCGAUUUUUUU	3	0.999725006673945	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN9272_c0_g1_1093_TPlot.pdf
TRINITY_DN9274_c0_g1:1851	si_a337	TRINITY_DN9274_c0_g1	1840	1860	1851	-30.80	-22.10	0.717532467532468	10.5	4-6,1857-1855;8-19,1853-1842	1-3,1860-1858[UP5];7-7,1854-1854[SIL];20-21,1841-1840[UP3]	..((((((((((((.(((...&...))).))))))))))))..	UCUGUUUUCGGGACUGGGCAG&AUUCCUUGUCCCGAAAAUAUU	4	0.764245703325452	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a337_TRINITY_DN9274_c0_g1_1851_TPlot.pdf
TRINITY_DN9274_c0_g1:1852	si_a336	TRINITY_DN9274_c0_g1	1841	1861	1852	-31.20	-22.10	0.708333333333333	11.5	5-7,1857-1855;9-20,1853-1842	1-4,1861-1858[UP5];8-8,1854-1854[SIL];21-21,1841-1841[UP3]	.((((((((((((.(((....&....))).)))))))))))).	CUGUUUUCGGGACUGGGCAGC&UAUUCCUUGUCCCGAAAAUAU	2	0.616476146306507	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN9274_c0_g1_1852_TPlot.pdf
TRINITY_DN9274_c0_g1:2219	si_a151	TRINITY_DN9274_c0_g1	2207	2228	2219	-28.90	-19.40	0.671280276816609	12	3-10,2226-2219;13-20,2215-2208	1-2,2228-2227[UP5];11-12,2218-2216[AILt];21-21,2207-2207[UP3]	.((((((((...((((((((..&..))))))))-..)))))))).	CGAUUGACCGCGAAAAUAGCUA&UUGUUGUUUU-AAGGUCAAUCU	2	0.954909831941131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a151_TRINITY_DN9274_c0_g1_2219_TPlot.pdf
TRINITY_DN9274_c0_g1:2220	si_a150	TRINITY_DN9274_c0_g1	2208	2229	2220	-29.90	-20.30	0.678929765886288	9	1-2,2229-2228;4-11,2226-2219;14-21,2215-2208	3-3,2227-2227[SIL];12-13,2218-2216[AILt]	((((((((...((((((((.((&)).))))))))-..))))))))	GAUUGACCGCGAAAAUAGCUAC&GUUGUUGUUUU-AAGGUCAAUC	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a150_TRINITY_DN9274_c0_g1_2220_TPlot.pdf
TRINITY_DN9274_c0_g1:2383	si_s97	TRINITY_DN9274_c0_g1	2369	2392	2383	-36.30	-25.24	0.695316804407713	12.5	1-10,2392-2383;12-19,2378-2371	11-11,2382-2379[AILt];20-21,2370-2369[UP3]	..((((((((....((((((((((&))))))))))---.))))))))..	GCCCGGUCUGCUACGGCGAAGAAG&CUUCUUCGCU---UCGGAUUGGAA	3	0.977759623468384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN9274_c0_g1_2383_TPlot.pdf
TRINITY_DN9274_c0_g1:2384	si_s96	TRINITY_DN9274_c0_g1	2370	2393	2384	-37.20	-26.64	0.716129032258064	11.5	1-11,2393-2383;13-20,2378-2371	12-12,2382-2379[AILt];21-21,2370-2370[UP3]	.((((((((....(((((((((((&)))))))))))---.)))))))).	CCCGGUCUGCUACGGCGAAGAAGA&UCUUCUUCGCU---UCGGAUUGGA	2	0.693452984048389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN9274_c0_g1_2384_TPlot.pdf
TRINITY_DN9274_c0_g1:2385	si_s95	TRINITY_DN9274_c0_g1	2371	2394	2385	-36.30	-25.94	0.714600550964187	10.5	2-12,2393-2383;14-21,2378-2371	1-1,2394-2394[UP5];13-13,2382-2379[AILt]	((((((((....(((((((((((.&.)))))))))))---.))))))))	CCGGUCUGCUACGGCGAAGAAGAC&UUCUUCUUCGCU---UCGGAUUGG	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s95_TRINITY_DN9274_c0_g1_2385_TPlot.pdf
TRINITY_DN9275_c0_g1:362	si_s244	TRINITY_DN9275_c0_g1	351	371	362	-33.80	-22.10	0.653846153846154	9	1-11,371-361;14-17,358-355	12-13,360-359[SIL];18-21,354-351[UP3]	....((((..(((((((((((&)))))))))))..))))....	CAAACGGGCUAUGUCUGUUGA&UCAAUAGGCAUUUCCCGAUAU	3	0.965281442476485	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s244_TRINITY_DN9275_c0_g1_362_TPlot.pdf
TRINITY_DN9275_c0_g1:364	si_s242	TRINITY_DN9275_c0_g1	353	373	364	-33.40	-23.30	0.697604790419162	7	2-13,372-361;16-19,358-355	1-1,373-373[UP5];14-15,360-359[SIL];20-21,354-353[UP3]	..((((..((((((((((((.&.))))))))))))..))))..	AACGGGCUAUGUCUGUUGAUC&AAUCAAUAGGCAUUUCCCGAU	3	0.709129033631003	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s242_TRINITY_DN9275_c0_g1_364_TPlot.pdf
TRINITY_DN9276_c0_g1:3955	si_a683	TRINITY_DN9276_c0_g1	3944	3965	3955	-35.80	-23.30	0.650837988826816	7	1-6,3965-3960;7-15,3958-3950;18-21,3947-3944	x-x,3959-3959[BULt];16-17,3949-3948[SIL]	((((..(((((((((.((((((&))))))-)))))))))..))))	UGUGGACGAAAUUGCAGUGGAU&AUUCAC-GCGGUUUCGAACACA	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a683_TRINITY_DN9276_c0_g1_3955_TPlot.pdf
TRINITY_DN9276_c0_g1:4892	si_s89	TRINITY_DN9276_c0_g1	4881	4901	4892	-35.30	-28.60	0.810198300283286	7	1-9,4901-4893;11-20,4891-4882	10-10,4892-4892[SIL];21-21,4881-4881[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	AGAAGUGAGGAUGAGGGAGGG&CCUUUCUUCUUCUUCGCUUCG	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9276_c0_g1_4892_TPlot.pdf
TRINITY_DN9276_c0_g1:5045	si_a326	TRINITY_DN9276_c0_g1	5033	5054	5045	-26.20	-19.50	0.744274809160305	9.5	2-11,5053-5044;14-21,5040-5033	1-1,5054-5054[UP5];12-13,5043-5041[AILt]	((((((((...((((((((((.&.))))))))))-..))))))))	GACGAGGACCAGGAAGAAUCAA&AUGAUUUUUUU-AUUCCUUGUC	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN9276_c0_g1_5045_TPlot.pdf
TRINITY_DN9276_c0_g1:5151	si_s69	TRINITY_DN9276_c0_g1	5140	5161	5151	-23.40	-16.40	0.700854700854701	8.5	3-6,5159-5156;7-20,5154-5141	1-2,5161-5160[UP5];x-x,5155-5155[BULt];21-21,5140-5140[UP3]	.((((((((((((((.((((..&..))))-)))))))))))))).	AGAAGAAAAAGAGUACGAAGAA&AACUUC-UAUUUUUUUUCUUUC	2	0.999999999982699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9276_c0_g1_5151_TPlot.pdf
TRINITY_DN9276_c0_g1:5226	si_s897	TRINITY_DN9276_c0_g1	5215	5238	5226	-31.30	-20.70	0.661341853035144	11	1-6,5238-5233;7-18,5229-5218	x-x,5232-5230[BULt];19-21,5217-5215[UP3]	...((((((((((((...((((((&))))))---))))))))))))...	CUAAAAUUGAGGGGAAGAAAGCCU&AGGCUU---UCUCUUCAAUUUCAA	4	0.999999702436257	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN9276_c0_g1_5226_TPlot.pdf
TRINITY_DN9276_c0_g1:5233	si_s893	TRINITY_DN9276_c0_g1	5219	5242	5233	-29.10	-19.80	0.680412371134021	14	5-10,5238-5233;11-21,5229-5219	1-4,5242-5239[UP5];x-x,5232-5230[BULt]	(((((((((((...((((((....&....))))))---)))))))))))	AAUUGAGGGGAAGAAAGCCUCCAA&AAAUAGGCUU---UCUCUUCAAUU	4	0.999989635785725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s893_TRINITY_DN9276_c0_g1_5233_TPlot.pdf
TRINITY_DN9276_c0_g1:5278	si_s312	TRINITY_DN9276_c0_g1	5267	5287	5278	-29.00	-18.90	0.651724137931034	13.5	6-9,5282-5279;11-19,5277-5269	1-5,5287-5283[UP5];10-10,5278-5278[SIL];20-21,5268-5267[UP3]	..(((((((((.((((.....&.....)))).)))))))))..	ACGCAAGAAGGCCAGAGACCG&AAAAUUCUGUCCUUCUUGUUA	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN9276_c0_g1_5278_TPlot.pdf
TRINITY_DN9279_c0_g1:945	si_a484	TRINITY_DN9279_c0_g1	934	955	945	-27.30	-17.80	0.652014652014652	6.5	2-7,954-949;8-9,947-946;11-21,944-934	1-1,955-955[UP5];x-x,948-948[BULt];10-10,945-945[SIL]	(((((((((((.((.((((((.&.))))))-)).)))))))))))	GGCGAUAUAUUGUACUAUAACU&UGUUAUA-UAGAAUAUGUCGUU	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a484_TRINITY_DN9279_c0_g1_945_TPlot.pdf
TRINITY_DN927_c0_g1:309	si_a784	TRINITY_DN927_c0_g1	298	318	309	-24.70	-16.40	0.663967611336032	7	2-14,317-305;16-21,303-298	1-1,318-318[UP5];15-15,304-304[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	AAGGUAUAAGAAUAGGGGGGG&ACUCUUCUAUUUUUCUAUUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN927_c0_g1_309_TPlot.pdf
TRINITY_DN927_c0_g1:318	si_s603	TRINITY_DN927_c0_g1	307	326	318	-27.20	-17.70	0.650735294117647	9	1-5,326-322;7-18,321-310	6-6,x-x[BULq];19-21,309-307[UP3]	...((((((((((((-(((((&))))).))))))))))))...	GAAUAGGGGGGGUUC-CUUGG&CCAAGCGAAUCUUUUUUAAAU	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s603_TRINITY_DN927_c0_g1_318_TPlot.pdf
TRINITY_DN927_c0_g1:3198	si_a757	TRINITY_DN927_c0_g1	3187	3207	3198	-33.10	-22.20	0.670694864048338	6	1-8,3207-3200;10-12,3198-3196;14-21,3194-3187	9-9,3199-3199[SIL];13-13,3195-3195[SIL]	((((((((.(((.((((((((&)))))))).))).))))))))	GAUUAAAAUCCUUAGGGAGGU&ACCUCCUUUGGGUUUUUGAUU	2	0.999929411428518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN927_c0_g1_3198_TPlot.pdf
TRINITY_DN927_c0_g1:3203	si_a752	TRINITY_DN927_c0_g1	3191	3212	3203	-34.80	-22.70	0.652298850574713	8.5	4-13,3209-3200;15-21,3197-3191	1-3,3212-3210[UP5];14-14,3199-3198[AILt]	(((((((..((((((((((...&...))))))))))-.)))))))	AAAAUCCUUAGGGAGGUUCCAA&CAUGAACCUCCUU-UGGGUUUU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a752_TRINITY_DN927_c0_g1_3203_TPlot.pdf
TRINITY_DN927_c0_g1:479	si_a402	TRINITY_DN927_c0_g1	468	488	479	-22.40	-15.90	0.709821428571429	7.5	1-17,488-472	18-21,471-468[UP3]	....(((((((((((((((((&)))))))))))))))))....	UUAUUAAAUAAGAUAGUUCUA&UAGAAUUGUUUUGUUUAUAUU	4	0.999780043879576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN927_c0_g1_479_TPlot.pdf
TRINITY_DN927_c0_g1:480	si_a401	TRINITY_DN927_c0_g1	469	489	480	-22.60	-15.90	0.70353982300885	7.5	2-18,488-472	1-1,489-489[UP5];19-21,471-469[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UAUUAAAUAAGAUAGUUCUAA&AUAGAAUUGUUUUGUUUAUAU	3	0.999926234152053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN927_c0_g1_480_TPlot.pdf
TRINITY_DN927_c0_g1:483	si_a398	TRINITY_DN927_c0_g1	472	492	483	-22.40	-15.80	0.705357142857143	10	5-21,488-472	1-4,492-489[UP5]	(((((((((((((((((....&....)))))))))))))))))	UAAAUAAGAUAGUUCUAAAUA&AAUAUAGAAUUGUUUUGUUUA	4	0.999893201326312	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN927_c0_g1_483_TPlot.pdf
TRINITY_DN927_c0_g1:693	si_s78	TRINITY_DN927_c0_g1	679	702	693	-26.20	-17.30	0.66030534351145	11	1-10,702-693;11-19,689-681	x-x,692-690[BULt];20-21,680-679[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UUGAGGAAGGAUCAAAGGAAGAAA&UUUUUUUCUU---UCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN927_c0_g1_693_TPlot.pdf
TRINITY_DN927_c0_g1:694	si_s77	TRINITY_DN927_c0_g1	680	703	694	-25.50	-18.00	0.705882352941177	10	1-11,703-693;12-20,689-681	x-x,692-690[BULt];21-21,680-680[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	UGAGGAAGGAUCAAAGGAAGAAAA&UUUUUUUUCUU---UCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN927_c0_g1_694_TPlot.pdf
TRINITY_DN927_c0_g2:123	si_a84	TRINITY_DN927_c0_g2	112	132	123	-24.90	-16.20	0.650602409638554	7.5	3-7,130-126;9-20,124-113	1-2,132-131[UP5];8-8,125-125[SIL];21-21,112-112[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	AACCUUUUUUUAGAAAUGACA&UUUCAUUAUUAAGAAAAGGUA	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a84_TRINITY_DN927_c0_g2_123_TPlot.pdf
TRINITY_DN9282_c0_g1:1156	si_a785	TRINITY_DN9282_c0_g1	1145	1166	1156	-25.90	-19.00	0.733590733590734	7.5	2-3,1165-1164;4-21,1162-1145	1-1,1166-1166[UP5];x-x,1163-1163[BULt]	((((((((((((((((((.((.&.))-))))))))))))))))))	GAGGGUGGGGAAAUAGGAUGAA&CUC-UUCUAUUUUUCUAUUUUC	4	0.999982273507496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9282_c0_g1_1156_TPlot.pdf
TRINITY_DN9282_c0_g1:1158	si_a547	TRINITY_DN9282_c0_g1	1147	1167	1158	-26.90	-20.40	0.758364312267658	6	1-5,1167-1163;7-21,1161-1147	6-6,1162-1162[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	GGGUGGGGAAAUAGGAUGAAU&GUUCAAUCUAUUUCUUUAUCU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN9282_c0_g1_1158_TPlot.pdf
TRINITY_DN9282_c0_g1:1165	si_s69	TRINITY_DN9282_c0_g1	1154	1174	1165	-23.40	-15.50	0.662393162393162	5	1-11,1174-1164;13-16,1162-1159;18-21,1157-1154	12-12,1163-1163[SIL];17-17,1158-1158[SIL]	((((.((((.(((((((((((&))))))))))).)))).))))	GAAAUAGGAUGAAUAGAAGUU&AACUUCUAUUUUUUUUCUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9282_c0_g1_1165_TPlot.pdf
TRINITY_DN9282_c0_g1:422	si_s78	TRINITY_DN9282_c0_g1	411	431	422	-26.20	-21.50	0.820610687022901	11.5	7-21,425-411	1-6,431-426[UP5]	(((((((((((((((......&......)))))))))))))))	AGGAGAAAGGAAAGACGUGGU&UUUUUUUCUUUCCUUUCUUCU	2	0.991058844142749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9282_c0_g1_422_TPlot.pdf
TRINITY_DN9282_c0_g1:514	si_s313	TRINITY_DN9282_c0_g1	503	523	514	-30.80	-22.80	0.74025974025974	9.5	5-16,519-508;18-20,506-504	1-4,523-520[UP5];17-17,507-507[SIL];21-21,503-503[UP3]	.(((.((((((((((((....&....)))))))))))).))).	UUAAGGAGAAGGACAGAGAUA&AAAUUCUGUCCUUCUUGUUAC	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN9282_c0_g1_514_TPlot.pdf
TRINITY_DN9282_c0_g1:645	si_a789	TRINITY_DN9282_c0_g1	630	656	645	-24.80	-16.20	0.653225806451613	14	1-5,656-652;6-11,649-644;12-21,639-630	x-x,651-650[BULt];x-x,643-640[BULt]	((((((((((....((((((..(((((&)))))--))))))----))))))))))	GUUGGAAGAUUUAAAGAAAAAUGUAGA&UCUAU--UUUUCU----AUUUUCCAAU	2	0.999999998880991	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN9282_c0_g1_645_TPlot.pdf
TRINITY_DN9283_c0_g1:601	si_a731	TRINITY_DN9283_c0_g1	587	610	601	-44.00	-32.00	0.727272727272727	5	2-15,609-596;16-18,594-592;19-21,589-587	1-1,610-610[UP5];x-x,595-595[BULt];x-x,591-590[BULt]	(((..(((.((((((((((((((.&.))))))))))))))-)))--)))	GCCGCAGGAGGUAAAGAUGCCUGC&UCGGGCAUCUUUACC-CCU--GGC	3	0.3594095458444	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a731_TRINITY_DN9283_c0_g1_601_TPlot.pdf
TRINITY_DN9283_c0_g1:602	si_a730	TRINITY_DN9283_c0_g1	590	611	602	-43.20	-31.30	0.724537037037037	6	3-16,609-596;17-20,594-591	1-2,611-610[UP5];x-x,595-595[BULt];21-21,590-590[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	GCAGGAGGUAAAGAUGCCUGCC&CUCGGGCAUCUUUACC-CCUGG	2	0.190699132168722	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a730_TRINITY_DN9283_c0_g1_602_TPlot.pdf
TRINITY_DN9283_c0_g1:603	si_a729	TRINITY_DN9283_c0_g1	591	612	603	-41.60	-31.00	0.745192307692308	7	4-17,609-596;18-21,594-591	1-3,612-610[UP5];x-x,595-595[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	CAGGAGGUAAAGAUGCCUGCCA&ACUCGGGCAUCUUUACC-CCUG	2	0.0834356870552547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a729_TRINITY_DN9283_c0_g1_603_TPlot.pdf
TRINITY_DN9283_c0_g1:604	si_a728	TRINITY_DN9283_c0_g1	592	613	604	-40.30	-27.90	0.692307692307692	9	5-18,609-596;19-21,594-592	1-4,613-610[UP5];x-x,595-595[BULt]	(((.((((((((((((((....&....))))))))))))))-)))	AGGAGGUAAAGAUGCCUGCCAA&UACUCGGGCAUCUUUACC-CCU	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a728_TRINITY_DN9283_c0_g1_604_TPlot.pdf
TRINITY_DN9283_c0_g1:605	si_a727	TRINITY_DN9283_c0_g1	593	614	605	-39.70	-26.70	0.672544080604534	11	6-19,609-596;20-21,594-593	1-5,614-610[UP5];x-x,595-595[BULt]	((.((((((((((((((.....&.....))))))))))))))-))	GGAGGUAAAGAUGCCUGCCAAG&UUACUCGGGCAUCUUUACC-CC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a727_TRINITY_DN9283_c0_g1_605_TPlot.pdf
TRINITY_DN9288_c0_g1:1216	si_s171	TRINITY_DN9288_c0_g1	1204	1225	1216	-41.60	-27.80	0.668269230769231	6.5	1-11,1225-1215;13-14,1214-1213;15-15,1211-1211;16-21,1209-1204	12-12,x-x[BULq];x-x,1212-1212[BULt];x-x,1210-1210[BULt]	((((((.(.((-(((((((((((&))))))))))).))-)-))))))	GCUCGGUGACA-CUUUGCCUCUG&CAGGGGUAAAGAUG-C-CCGAGU	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s171_TRINITY_DN9288_c0_g1_1216_TPlot.pdf
TRINITY_DN9288_c0_g1:1236	si_a56	TRINITY_DN9288_c0_g1	1224	1245	1236	-38.90	-26.42	0.679177377892031	5	1-13,1245-1233;17-21,1228-1224	14-16,1232-1229[AILt]	(((((....(((((((((((((&)))))))))))))-...)))))	UGAAACUGCGCGAGUCGACUUC&GGAGUCGACUCGC-UUCUUUCA	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a56_TRINITY_DN9288_c0_g1_1236_TPlot.pdf
TRINITY_DN9288_c0_g1:1237	si_a55	TRINITY_DN9288_c0_g1	1225	1247	1237	-38.90	-25.62	0.658611825192802	6	1-4,1247-1244;5-14,1242-1233;18-21,1228-1225	x-x,1243-1243[BULt];15-17,1232-1229[AILt]	((((....((((((((((.((((&))))-))))))))))-...))))	GAAACUGCGCGAGUCGACUUCCU&AGGA-GUCGACUCGC-UUCUUUC	4	0.997326473901037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN9288_c0_g1_1237_TPlot.pdf
TRINITY_DN9288_c0_g1:1238	si_a54	TRINITY_DN9288_c0_g1	1227	1248	1238	-37.30	-26.40	0.707774798927614	8.5	1-5,1248-1244;6-15,1242-1233	x-x,1243-1243[BULt];16-21,1232-1227[UP3]	......((((((((((.(((((&)))))-))))))))))......	AACUGCGCGAGUCGACUUCCUG&UAGGA-GUCGACUCGCUUCUUU	3	0.821064198827151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a54_TRINITY_DN9288_c0_g1_1238_TPlot.pdf
TRINITY_DN9288_c0_g1:1240	si_a52	TRINITY_DN9288_c0_g1	1229	1250	1240	-40.00	-30.90	0.7725	7	1-7,1250-1244;8-17,1242-1233	x-x,1243-1243[BULt];18-21,1232-1229[UP3]	....((((((((((.(((((((&)))))))-))))))))))....	CUGCGCGAGUCGACUUCCUGGA&UCUAGGA-GUCGACUCGCUUCU	2	0.0485656541704618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a52_TRINITY_DN9288_c0_g1_1240_TPlot.pdf
TRINITY_DN9288_c0_g1:1241	si_a51	TRINITY_DN9288_c0_g1	1230	1251	1241	-41.10	-32.20	0.78345498783455	6.5	1-8,1251-1244;9-18,1242-1233	x-x,1243-1243[BULt];19-21,1232-1230[UP3]	...((((((((((.((((((((&))))))))-))))))))))...	UGCGCGAGUCGACUUCCUGGAU&GUCUAGGA-GUCGACUCGCUUC	4	0.0980640724028421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a51_TRINITY_DN9288_c0_g1_1241_TPlot.pdf
TRINITY_DN9288_c0_g1:1244	si_a49	TRINITY_DN9288_c0_g1	1232	1253	1244	-42.20	-32.90	0.779620853080569	7	2-10,1252-1244;11-20,1242-1233	1-1,1253-1253[UP5];x-x,1243-1243[BULt];21-21,1232-1232[UP3]	.((((((((((.(((((((((.&.)))))))))-)))))))))).	CGCGAGUCGACUUCCUGGAUUC&AGGUCUAGGA-GUCGACUCGCU	3	0.0777836631120556	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a49_TRINITY_DN9288_c0_g1_1244_TPlot.pdf
TRINITY_DN9288_c0_g1:1246	si_a47	TRINITY_DN9288_c0_g1	1234	1255	1246	-41.20	-29.20	0.70873786407767	10	4-12,1252-1244;13-21,1242-1234	1-3,1255-1253[UP5];x-x,1243-1243[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	CGAGUCGACUUCCUGGAUUCAU&GUAGGUCUAGGA-GUCGACUCG	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a47_TRINITY_DN9288_c0_g1_1246_TPlot.pdf
TRINITY_DN9288_c0_g1:1299	si_a76	TRINITY_DN9288_c0_g1	1288	1308	1299	-21.20	-13.80	0.650943396226415	15	6-19,1303-1290	1-5,1308-1304[UP5];20-21,1289-1288[UP3]	..((((((((((((((.....&.....))))))))))))))..	GCUGGUGGUGAAGAGCUUCGG&AAAUUGUUUUUCAUUAUUAAG	4	0.999999999999975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a76_TRINITY_DN9288_c0_g1_1299_TPlot.pdf
TRINITY_DN9288_c0_g1:1498	si_a787	TRINITY_DN9288_c0_g1	1484	1507	1498	-26.30	-17.10	0.650190114068441	11	1-8,1507-1500;11-14,1497-1494;15-20,1490-1485	9-10,1499-1498[SIL];x-x,1493-1491[BULt];21-21,1484-1484[UP3]	.((((((...((((..((((((((&))))))))..))))---)))))).	GGGAAAAAACUAGAUUAAUGGGGG&CUUCUAUUUUUCUA---UUUUCCA	2	0.999999999993842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN9288_c0_g1_1498_TPlot.pdf
TRINITY_DN9288_c0_g1:757	si_a62	TRINITY_DN9288_c0_g1	746	768	757	-32.20	-22.36	0.694409937888199	12	1-8,768-761;12-21,755-746	9-11,760-756[AILt]	((((((((((.....((((((((&))))))))--...))))))))))	GCGGUUUGGAUCAACAGCGAGUC&GACUCGCU--UCUUUCAAAUUGU	2	0.7392476242547	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a62_TRINITY_DN9288_c0_g1_757_TPlot.pdf
TRINITY_DN9288_c0_g1:912	si_s803	TRINITY_DN9288_c0_g1	900	921	912	-26.00	-17.20	0.661538461538462	8.5	2-13,920-909;16-21,905-900	1-1,921-921[UP5];14-15,908-906[AILt]	((((((...((((((((((((.&.))))))))))))-..))))))	GGGAGGAGUACGGAGGUGAAAC&AUUUUAUCUUCGU-UACCUUUU	3	0.999999999999977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN9288_c0_g1_912_TPlot.pdf
TRINITY_DN928_c0_g1:1552	si_a40	TRINITY_DN928_c0_g1	1541	1560	1552	-40.50	-29.80	0.735802469135802	6	3-5,1558-1556;7-21,1555-1541	1-2,1560-1559[UP5];6-6,x-x[BULq]	(((((((((((((((-(((..&..))).)))))))))))))))	ACUCUUAGGCCUACC-GUCAU&AAGACCGGUAGGUCUAGGAGU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a40_TRINITY_DN928_c0_g1_1552_TPlot.pdf
TRINITY_DN928_c0_g1:1553	si_a39	TRINITY_DN928_c0_g1	1542	1561	1553	-40.10	-28.50	0.71072319201995	8	4-6,1558-1556;8-21,1555-1542	1-3,1561-1559[UP5];7-7,x-x[BULq]	((((((((((((((-(((...&...))).))))))))))))))	CUCUUAGGCCUACC-GUCAUU&UAAGACCGGUAGGUCUAGGAG	3	0.332941293507647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a39_TRINITY_DN928_c0_g1_1553_TPlot.pdf
TRINITY_DN928_c0_g1:1692	si_a784	TRINITY_DN928_c0_g1	1681	1701	1692	-24.70	-18.10	0.732793522267207	6.5	1-4,1701-1698;6-17,1696-1685	5-5,1697-1697[SIL];18-21,1684-1681[UP3]	....((((((((((((.((((&)))).))))))))))))....	UCCCUAGAGAAAUAGACGAGU&ACUCUUCUAUUUUUCUAUUUU	3	0.999972643704982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN928_c0_g1_1692_TPlot.pdf
TRINITY_DN928_c0_g1:1693	si_a783	TRINITY_DN928_c0_g1	1682	1702	1693	-24.70	-19.00	0.769230769230769	5.5	1-5,1702-1698;7-18,1696-1685	6-6,1697-1697[SIL];19-21,1684-1682[UP3]	...((((((((((((.(((((&))))).))))))))))))...	CCCUAGAGAAAUAGACGAGUU&AACUCUUCUAUUUUUCUAUUU	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN928_c0_g1_1693_TPlot.pdf
TRINITY_DN928_c0_g1:1977	si_a404	TRINITY_DN928_c0_g1	1966	1986	1977	-21.70	-15.60	0.71889400921659	10.5	1-8,1986-1979;11-18,1976-1969	9-10,1978-1977[SIL];19-21,1968-1966[UP3]	...((((((((..((((((((&))))))))..))))))))...	AAUAUAUAGGCUUAGCGAUUC&GAAUUGUUUUGUUUAUAUUUA	4	0.999979090593187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN928_c0_g1_1977_TPlot.pdf
TRINITY_DN9291_c0_g1:262	si_s40	TRINITY_DN9291_c0_g1	251	271	262	-24.30	-16.90	0.695473251028807	7.5	1-14,271-258;16-20,256-252	15-15,257-257[SIL];21-21,251-251[UP3]	.(((((.((((((((((((((&)))))))))))))).))))).	AAGGUCGGAUUAUUGGGGGUU&AAUCUUUAAUAAUUGGAUUUC	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN9291_c0_g1_262_TPlot.pdf
TRINITY_DN9293_c0_g2:20	si_s98	TRINITY_DN9293_c0_g2	6	30	20	-34.70	-25.20	0.726224783861671	7	1-5,30-26;6-14,24-16;15-19,12-8	x-x,25-25[BULt];x-x,15-13[BULt];20-21,7-6[UP3]	..(((((...(((((((((.(((((&)))))-)))))))))---)))))..	GGUCCAAGUCUCCGAAGCGUAAGAA&UUCUU-CGCUUCGGA---UUGGAAA	3	0.797955038320218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s98_TRINITY_DN9293_c0_g2_20_TPlot.pdf
TRINITY_DN9293_c0_g2:21	si_s97	TRINITY_DN9293_c0_g2	7	31	21	-36.30	-25.40	0.699724517906336	7	2-6,30-26;7-15,24-16;16-20,12-8	1-1,31-31[UP5];x-x,25-25[BULt];x-x,15-13[BULt];21-21,7-7[UP3]	.(((((...(((((((((.(((((.&.)))))-)))))))))---))))).	GUCCAAGUCUCCGAAGCGUAAGAAA&CUUCUU-CGCUUCGGA---UUGGAA	4	0.963970592672826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN9293_c0_g2_21_TPlot.pdf
TRINITY_DN9296_c0_g1:238	si_s536	TRINITY_DN9296_c0_g1	227	247	238	-27.70	-18.30	0.660649819494585	10.5	3-16,245-232	1-2,247-246[UP5];17-21,231-227[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUAACGAUUGGAUCAGGAACU&CAUUUUUGAUCCGAUCAAAAU	3	0.998000514428102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN9296_c0_g1_238_TPlot.pdf
TRINITY_DN9299_c0_g1:365	si_a756	TRINITY_DN9299_c0_g1	355	374	365	-33.10	-22.80	0.688821752265861	7	3-12,372-363;14-19,362-357	1-2,374-373[UP5];13-13,x-x[BULq];20-21,356-355[UP3]	..((((((-((((((((((..&..)))))))))).))))))..	AACAAGGA-CCAAAGGAGGGG&AACCUCCUUUGGGUUUUUGAU	4	0.999955121159355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN9299_c0_g1_365_TPlot.pdf
TRINITY_DN9299_c0_g1:839	si_s35	TRINITY_DN9299_c0_g1	828	848	839	-24.00	-15.70	0.654166666666667	9	3-17,846-832	1-2,848-847[UP5];18-21,831-828[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAUUUUAUUGAAGAUUUGGGU&AACUAAAUCUUUAAUAAUUGG	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN9299_c0_g1_839_TPlot.pdf
TRINITY_DN9299_c0_g1:840	si_s34	TRINITY_DN9299_c0_g1	829	849	840	-23.30	-16.10	0.690987124463519	6.5	1-2,849-848;4-18,846-832	3-3,847-847[SIL];19-21,831-829[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	AUUUUAUUGAAGAUUUGGGUG&CAACUAAAUCUUUAAUAAUUG	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s34_TRINITY_DN9299_c0_g1_840_TPlot.pdf
TRINITY_DN9299_c0_g1:841	si_s33	TRINITY_DN9299_c0_g1	830	850	841	-24.10	-16.30	0.676348547717842	6.5	2-3,849-848;5-19,846-832	1-1,850-850[UP5];4-4,847-847[SIL];20-21,831-830[UP3]	..(((((((((((((((.((.&.)).)))))))))))))))..	UUUUAUUGAAGAUUUGGGUGA&GCAACUAAAUCUUUAAUAAUU	4	0.938376899400625	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN9299_c0_g1_841_TPlot.pdf
TRINITY_DN9299_c0_g1:843	si_s31	TRINITY_DN9299_c0_g1	832	852	843	-24.80	-16.20	0.653225806451613	8.5	4-5,849-848;7-21,846-832	1-3,852-850[UP5];6-6,847-847[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	UUAUUGAAGAUUUGGGUGACC&UUGCAACUAAAUCUUUAAUAA	4	0.994378923674708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s31_TRINITY_DN9299_c0_g1_843_TPlot.pdf
TRINITY_DN92_c0_g1:1358	si_a17	TRINITY_DN92_c0_g1	1344	1367	1358	-24.30	-15.80	0.650205761316872	14	1-12,1367-1356;16-20,1349-1345	13-15,1355-1350[AILt];21-21,1344-1344[UP3]	.(((((......((((((((((((&))))))))))))---...))))).	CGCUGACCAACCUGAGUGGGCUUU&AAAGCCUAUUUA---UUUUUAGUU	3	0.999999999905081	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN92_c0_g1_1358_TPlot.pdf
TRINITY_DN92_c0_g1:193	si_a351	TRINITY_DN92_c0_g1	182	202	193	-20.50	-13.60	0.663414634146341	12	6-19,197-184	1-5,202-198[UP5];20-21,183-182[UP3]	..((((((((((((((.....&.....))))))))))))))..	AACAAAAUAGGAUUAAGGAGG&AAAUAUUAAUUCUAUUUUGAU	4	0.999998763609859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN92_c0_g1_193_TPlot.pdf
TRINITY_DN92_c0_g1:194	si_a350	TRINITY_DN92_c0_g1	183	203	194	-20.30	-13.60	0.669950738916256	13	7-20,197-184	1-6,203-198[UP5];21-21,183-183[UP3]	.((((((((((((((......&......)))))))))))))).	ACAAAAUAGGAUUAAGGAGGC&AAAAUAUUAAUUCUAUUUUGA	3	0.999933335234881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN92_c0_g1_194_TPlot.pdf
TRINITY_DN92_c0_g1:365	si_s316	TRINITY_DN92_c0_g1	354	375	365	-31.50	-21.40	0.679365079365079	8	1-5,375-371;6-15,369-360;17-18,358-357	x-x,370-370[BULt];16-16,359-359[SIL];19-21,356-354[UP3]	...((.((((((((((.(((((&)))))-)))))))))).))...	AUGGUUACAAGGAGGACCAGGA&UUCUG-UCCUUCUUGUUACAAA	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN92_c0_g1_365_TPlot.pdf
TRINITY_DN92_c0_g1:366	si_s315	TRINITY_DN92_c0_g1	355	376	366	-31.60	-21.40	0.677215189873418	8	2-6,375-371;7-16,369-360;18-19,358-357	1-1,376-376[UP5];x-x,370-370[BULt];17-17,359-359[SIL];20-21,356-355[UP3]	..((.((((((((((.(((((.&.)))))-)))))))))).))..	UGGUUACAAGGAGGACCAGGAG&AUUCUG-UCCUUCUUGUUACAA	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN92_c0_g1_366_TPlot.pdf
TRINITY_DN92_c0_g1:368	si_s313	TRINITY_DN92_c0_g1	357	378	368	-30.80	-21.00	0.681818181818182	9.5	4-8,375-371;9-18,369-360;20-21,358-357	1-3,378-376[UP5];x-x,370-370[BULt];19-19,359-359[SIL]	((.((((((((((.(((((...&...)))))-)))))))))).))	GUUACAAGGAGGACCAGGAGCA&AAAUUCUG-UCCUUCUUGUUAC	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN92_c0_g1_368_TPlot.pdf
TRINITY_DN92_c0_g2:100	si_s39	TRINITY_DN92_c0_g2	89	109	100	-22.30	-15.40	0.690582959641256	8.5	1-10,109-100;13-17,97-93	11-12,99-98[SIL];18-21,92-89[UP3]	....(((((..((((((((((&))))))))))..)))))....	AAAGCCGAUGUUUAAAGAUUU&AAAUCUUUAAUAAUUGGAUUU	3	0.999406514045172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s39_TRINITY_DN92_c0_g2_100_TPlot.pdf
TRINITY_DN92_c0_g2:101	si_s38	TRINITY_DN92_c0_g2	90	110	101	-22.70	-16.20	0.713656387665198	7	1-11,110-100;14-18,97-93	12-13,99-98[SIL];19-21,92-90[UP3]	...(((((..(((((((((((&)))))))))))..)))))...	AAGCCGAUGUUUAAAGAUUUG&UAAAUCUUUAAUAAUUGGAUU	3	0.946888396543335	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s38_TRINITY_DN92_c0_g2_101_TPlot.pdf
TRINITY_DN92_c0_g2:102	si_s37	TRINITY_DN92_c0_g2	91	111	102	-24.40	-16.40	0.672131147540984	6.5	2-12,110-100;15-19,97-93	1-1,111-111[UP5];13-14,99-98[SIL];20-21,92-91[UP3]	..(((((..(((((((((((.&.)))))))))))..)))))..	AGCCGAUGUUUAAAGAUUUGU&CUAAAUCUUUAAUAAUUGGAU	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s37_TRINITY_DN92_c0_g2_102_TPlot.pdf
TRINITY_DN92_c0_g2:104	si_s35	TRINITY_DN92_c0_g2	93	113	104	-24.00	-16.20	0.675	8.5	4-14,110-100;17-21,97-93	1-3,113-111[UP5];15-16,99-98[SIL]	(((((..(((((((((((...&...)))))))))))..)))))	CCGAUGUUUAAAGAUUUGUAU&AACUAAAUCUUUAAUAAUUGG	3	0.93497095372687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s35_TRINITY_DN92_c0_g2_104_TPlot.pdf
TRINITY_DN92_c0_g2:1227	si_a405	TRINITY_DN92_c0_g2	1216	1236	1227	-19.80	-13.10	0.661616161616162	11.5	2-14,1235-1223	1-1,1236-1236[UP5];15-21,1222-1216[UP3]	.......(((((((((((((.&.))))))))))))).......	UCACGUUUGAACAGAGCGAUG&AAUUGUUUUGUUUAUAUUUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN92_c0_g2_1227_TPlot.pdf
TRINITY_DN92_c0_g2:1705	si_a17	TRINITY_DN92_c0_g2	1691	1714	1705	-24.30	-15.80	0.650205761316872	14	1-12,1714-1703;16-20,1696-1692	13-15,1702-1697[AILt];21-21,1691-1691[UP3]	.(((((......((((((((((((&))))))))))))---...))))).	CGCUGACCAACCUGAGUGGGCUUU&AAAGCCUAUUUA---UUUUUAGUU	4	0.99999999996328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN92_c0_g2_1705_TPlot.pdf
TRINITY_DN92_c0_g2:689	si_s125	TRINITY_DN92_c0_g2	678	698	689	-27.20	-18.90	0.694852941176471	12	6-19,693-680	1-5,698-694[UP5];20-21,679-678[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAUGAUUCAAUUCUUCCAACU&AAAUAGAAGAGUUGAAUCAAU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s125_TRINITY_DN92_c0_g2_689_TPlot.pdf
TRINITY_DN92_c0_g2:690	si_s124	TRINITY_DN92_c0_g2	679	699	690	-27.10	-18.90	0.697416974169742	13	7-20,693-680	1-6,699-694[UP5];21-21,679-679[UP3]	.((((((((((((((......&......)))))))))))))).	AUGAUUCAAUUCUUCCAACUA&AAAAUAGAAGAGUUGAAUCAA	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s124_TRINITY_DN92_c0_g2_690_TPlot.pdf
TRINITY_DN92_c0_g2:853	si_s537	TRINITY_DN92_c0_g2	842	862	853	-26.40	-18.10	0.685606060606061	8.5	1-5,862-858;7-16,856-847	6-6,857-857[SIL];17-21,846-842[UP3]	.....((((((((((.(((((&))))).)))))))))).....	AUGGAUGGUCGGAUCCAAAGU&AUUUUUGAUCCGAUCAAAAUA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN92_c0_g2_853_TPlot.pdf
TRINITY_DN92_c0_g2:854	si_s536	TRINITY_DN92_c0_g2	843	863	854	-27.70	-18.10	0.653429602888087	8.5	2-6,862-858;8-17,856-847	1-1,863-863[UP5];7-7,857-857[SIL];18-21,846-843[UP3]	....((((((((((.(((((.&.))))).))))))))))....	UGGAUGGUCGGAUCCAAAGUA&CAUUUUUGAUCCGAUCAAAAU	3	0.999515278287221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN92_c0_g2_854_TPlot.pdf
TRINITY_DN92_c0_g2:909	si_s536	TRINITY_DN92_c0_g2	898	918	909	-27.70	-18.10	0.653429602888087	7.5	2-6,917-913;8-17,911-902	1-1,918-918[UP5];7-7,912-912[SIL];18-21,901-898[UP3]	....((((((((((.(((((.&.))))).))))))))))....	CGGAUGGUCGGAUCCAAAAUA&CAUUUUUGAUCCGAUCAAAAU	4	0.99959976315447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN92_c0_g2_909_TPlot.pdf
TRINITY_DN92_c0_g2:98	si_s41	TRINITY_DN92_c0_g2	87	107	98	-25.00	-16.50	0.66	6.5	1-8,107-100;11-15,97-93;17-20,91-88	9-10,99-98[SIL];16-16,92-92[SIL];21-21,87-87[UP3]	.((((.(((((..((((((((&))))))))..))))).)))).	AGAAAGCCGAUGUUUAAAGAU&AUCUUUAAUAAUUGGAUUUCA	3	0.999430063000995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN92_c0_g2_98_TPlot.pdf
TRINITY_DN92_c0_g2:99	si_s40	TRINITY_DN92_c0_g2	88	108	99	-24.30	-16.90	0.695473251028807	5.5	1-9,108-100;12-16,97-93;18-21,91-88	10-11,99-98[SIL];17-17,92-92[SIL]	((((.(((((..(((((((((&)))))))))..))))).))))	GAAAGCCGAUGUUUAAAGAUU&AAUCUUUAAUAAUUGGAUUUC	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN92_c0_g2_99_TPlot.pdf
TRINITY_DN9301_c0_g1:336	si_s86	TRINITY_DN9301_c0_g1	325	350	336	-32.90	-24.20	0.735562310030395	12.5	1-7,350-344;8-15,338-331;17-21,329-325	x-x,343-339[BULt];16-16,330-330[SIL]	(((((.((((((((.....(((((((&)))))))-----)))))))).)))))	AGCGAUGAGGAAGAAUGUGAAGGAGA&UUUCCUU-----UCUUCUUCUUCGCU	3	0.999983838913576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9301_c0_g1_336_TPlot.pdf
TRINITY_DN9301_c0_g1:338	si_a71	TRINITY_DN9301_c0_g1	327	347	338	-23.30	-16.40	0.703862660944206	7.5	1-6,347-342;8-10,340-338;12-20,336-328	7-7,341-341[SIL];11-11,337-337[SIL];21-21,327-327[UP3]	.(((((((((.(((.((((((&)))))).))).))))))))).	CGAUGAGGAAGAAUGUGAAGG&CUUUCAAAUUGUUUUUCAUUA	3	0.999985095982078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN9301_c0_g1_338_TPlot.pdf
TRINITY_DN9301_c0_g1:339	si_a70	TRINITY_DN9301_c0_g1	328	348	339	-23.90	-17.80	0.744769874476988	6.5	1-7,348-342;9-11,340-338;13-21,336-328	8-8,341-341[SIL];12-12,337-337[SIL]	(((((((((.(((.(((((((&))))))).))).)))))))))	GAUGAGGAAGAAUGUGAAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN9301_c0_g1_339_TPlot.pdf
TRINITY_DN9301_c0_g1:341	si_s81	TRINITY_DN9301_c0_g1	330	351	341	-28.90	-21.10	0.730103806228374	7.5	1-9,351-343;10-10,341-341;12-20,339-331	x-x,342-342[BULt];11-11,340-340[SIL];21-21,330-330[UP3]	.(((((((((.(.(((((((((&)))))))))-).))))))))).	UGAGGAAGAAUGUGAAGGAGAA&UUUUCUUUC-CUUUCUUCUUCU	2	0.99999993609218	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9301_c0_g1_341_TPlot.pdf
TRINITY_DN9301_c0_g1:345	si_s78	TRINITY_DN9301_c0_g1	333	354	345	-26.20	-19.00	0.725190839694656	7.5	2-12,353-343;13-13,341-341;15-21,339-333	1-1,354-354[UP5];x-x,342-342[BULt];14-14,340-340[SIL]	(((((((.(.(((((((((((.&.)))))))))))-).)))))))	GGAAGAAUGUGAAGGAGAAGAG&UUUUUUUCUUUC-CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9301_c0_g1_345_TPlot.pdf
TRINITY_DN9301_c0_g1:353	si_s70	TRINITY_DN9301_c0_g1	342	361	353	-25.80	-17.40	0.674418604651163	7	2-6,360-356;8-20,355-343	1-1,361-361[UP5];7-7,x-x[BULq];21-21,342-342[UP3]	.(((((((((((((-(((((.&.))))).))))))))))))).	UGAAGGAGAAGAGA-AGAAGA&ACUUCUAUUUUUUUUCUUUCC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9301_c0_g1_353_TPlot.pdf
TRINITY_DN9301_c0_g1:730	si_s90	TRINITY_DN9301_c0_g1	719	739	730	-35.30	-25.60	0.725212464589235	5	1-13,739-727;15-20,725-720	14-14,726-726[SIL];21-21,719-719[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	GUGAGGCUAAGGAGAAGAAGG&CUUUCUUCUUCUUCGCUUCGG	2	0.990484751514774	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN9301_c0_g1_730_TPlot.pdf
TRINITY_DN9301_c0_g1:731	si_s89	TRINITY_DN9301_c0_g1	720	740	731	-35.30	-28.00	0.793201133144476	4	1-14,740-727;16-21,725-720	15-15,726-726[SIL]	((((((.((((((((((((((&)))))))))))))).))))))	UGAGGCUAAGGAGAAGAAGGG&CCUUUCUUCUUCUUCGCUUCG	4	0.769062343717598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9301_c0_g1_731_TPlot.pdf
TRINITY_DN9301_c0_g1:735	si_s85	TRINITY_DN9301_c0_g1	724	744	735	-33.80	-22.40	0.662721893491124	9.5	5-18,740-727;20-21,725-724	1-4,744-741[UP5];19-19,726-726[SIL]	((.((((((((((((((....&....)))))))))))))).))	GCUAAGGAGAAGAAGGGUAUU&CUUUCCUUUCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN9301_c0_g1_735_TPlot.pdf
TRINITY_DN9301_c0_g1:739	si_s81	TRINITY_DN9301_c0_g1	728	754	739	-28.90	-22.10	0.764705882352941	16.5	1-8,754-747;9-21,740-728	x-x,746-741[BULt]	(((((((((((((......((((((((&))))))))------)))))))))))))	AGGAGAAGAAGGGUAUUUUGGAGAAGA&UUUUCUUU------CCUUUCUUCUUCU	4	0.99999948044527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9301_c0_g1_739_TPlot.pdf
TRINITY_DN9301_c0_g1:740	si_s80	TRINITY_DN9301_c0_g1	729	755	740	-28.20	-21.00	0.74468085106383	17.5	2-9,754-747;10-21,740-729	1-1,755-755[UP5];x-x,746-741[BULt]	((((((((((((......((((((((.&.))))))))------))))))))))))	GGAGAAGAAGGGUAUUUUGGAGAAGAU&UUUUUCUUU------CCUUUCUUCUUC	3	0.999999999667001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9301_c0_g1_740_TPlot.pdf
TRINITY_DN9301_c0_g1:820	si_s79	TRINITY_DN9301_c0_g1	808	829	820	-26.20	-22.40	0.854961832061069	5.5	2-11,828-819;12-21,817-808	1-1,829-829[UP5];x-x,818-818[BULt]	((((((((((.((((((((((.&.))))))))))-))))))))))	AAGGAGAAAGAGAAAGAGAAGG&UUUUUUCUUUC-CUUUCUUCUU	4	0.97615705671294	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9301_c0_g1_820_TPlot.pdf
TRINITY_DN9305_c0_g1:1757	si_s519	TRINITY_DN9305_c0_g1	1747	1766	1757	-24.40	-17.30	0.709016393442623	6	1-14,1766-1753;18-21,1750-1747	15-17,1752-1751[AILq]	((((..-((((((((((((((&))))))))))))))...))))	AAUGUG-UCGAGUUAGGAGUA&UAUUCUUAAUUCGAAAUCAUU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN9305_c0_g1_1757_TPlot.pdf
TRINITY_DN9305_c0_g1:1758	si_s518	TRINITY_DN9305_c0_g1	1748	1767	1758	-24.60	-16.40	0.666666666666667	7	2-15,1766-1753;19-21,1750-1748	1-1,1767-1767[UP5];16-18,1752-1751[AILq]	(((..-((((((((((((((.&.))))))))))))))...)))	AUGUG-UCGAGUUAGGAGUAA&AUAUUCUUAAUUCGAAAUCAU	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN9305_c0_g1_1758_TPlot.pdf
TRINITY_DN9305_c0_g1:1759	si_s517	TRINITY_DN9305_c0_g1	1748	1768	1759	-24.80	-16.30	0.657258064516129	11	3-16,1766-1753	1-2,1768-1767[UP5];17-21,1752-1748[UP3]	.....((((((((((((((..&..)))))))))))))).....	AUGUGUCGAGUUAGGAGUAAA&UAUAUUCUUAAUUCGAAAUCA	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s517_TRINITY_DN9305_c0_g1_1759_TPlot.pdf
TRINITY_DN9305_c0_g1:1761	si_s515	TRINITY_DN9305_c0_g1	1750	1770	1761	-24.80	-16.30	0.657258064516129	12.5	5-18,1766-1753	1-4,1770-1767[UP5];19-21,1752-1750[UP3]	...((((((((((((((....&....))))))))))))))...	GUGUCGAGUUAGGAGUAAAAU&UCUAUAUUCUUAAUUCGAAAU	3	0.969868615121604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN9305_c0_g1_1761_TPlot.pdf
TRINITY_DN9305_c0_g1:1803	si_s486	TRINITY_DN9305_c0_g1	1792	1812	1803	-18.10	-12.70	0.701657458563536	4	1-13,1812-1800;15-20,1798-1793	14-14,1799-1799[SIL];21-21,1792-1792[UP3]	.((((((.(((((((((((((&))))))))))))).)))))).	AUUUAUAAUUAAAUAAGUGUA&UAUAUUUAUUUAAAUAUAAAC	3	0.963846922908891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN9305_c0_g1_1803_TPlot.pdf
TRINITY_DN9305_c0_g1:1804	si_s485	TRINITY_DN9305_c0_g1	1793	1813	1804	-18.10	-12.80	0.707182320441989	4	2-14,1812-1800;16-21,1798-1793	1-1,1813-1813[UP5];15-15,1799-1799[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	UUUAUAAUUAAAUAAGUGUAC&CUAUAUUUAUUUAAAUAUAAA	2	0.963508487859299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN9305_c0_g1_1804_TPlot.pdf
TRINITY_DN9305_c0_g1:352	si_a784	TRINITY_DN9305_c0_g1	341	363	352	-24.70	-17.10	0.692307692307692	10.5	2-6,362-358;7-19,355-343	1-1,363-363[UP5];x-x,357-356[BULt];20-21,342-341[UP3]	..(((((((((((((..(((((.&.)))))--)))))))))))))..	UUGAUGGAGAGAUAGUCAGGAGA&ACUCUU--CUAUUUUUCUAUUUU	2	0.999999570894628	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9305_c0_g1_352_TPlot.pdf
TRINITY_DN9305_c0_g1:353	si_a783	TRINITY_DN9305_c0_g1	342	364	353	-24.70	-17.10	0.692307692307692	11.5	3-7,362-358;8-20,355-343	1-2,364-363[UP5];x-x,357-356[BULt];21-21,342-342[UP3]	.(((((((((((((..(((((..&..)))))--))))))))))))).	UGAUGGAGAGAUAGUCAGGAGAU&AACUCUU--CUAUUUUUCUAUUU	2	0.999998041111167	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9305_c0_g1_353_TPlot.pdf
TRINITY_DN9305_c0_g1:665	si_a323	TRINITY_DN9305_c0_g1	653	674	665	-26.80	-18.30	0.682835820895522	5	1-16,674-659;18-18,657-657;19-21,655-653	17-17,658-658[SIL];x-x,656-656[BULt]	(((.(.((((((((((((((((&)))))))))))))))).)-)))	AAGAGCGUGAAAAGAUUAUGGA&UCCAUGAUUUUUUUAUUC-CUU	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN9305_c0_g1_665_TPlot.pdf
TRINITY_DN9305_c0_g1:668	si_a320	TRINITY_DN9305_c0_g1	657	677	668	-24.40	-16.90	0.692622950819672	10	4-19,674-659	1-3,677-675[UP5];20-21,658-657[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCGUGAAAAGAUUAUGGAAUU&UUAUCCAUGAUUUUUUUAUUC	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN9305_c0_g1_668_TPlot.pdf
TRINITY_DN9305_c0_g1:669	si_a319	TRINITY_DN9305_c0_g1	658	678	669	-22.40	-16.90	0.754464285714286	10.5	5-20,674-659	1-4,678-675[UP5];21-21,658-658[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGUGAAAAGAUUAUGGAAUUC&UUUAUCCAUGAUUUUUUUAUU	4	0.997825117484635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a319_TRINITY_DN9305_c0_g1_669_TPlot.pdf
TRINITY_DN9305_c0_g1:670	si_a318	TRINITY_DN9305_c0_g1	659	679	670	-22.50	-16.90	0.751111111111111	11.5	6-21,674-659	1-5,679-675[UP5]	((((((((((((((((.....&.....))))))))))))))))	GUGAAAAGAUUAUGGAAUUCU&AUUUAUCCAUGAUUUUUUUAU	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN9305_c0_g1_670_TPlot.pdf
TRINITY_DN9305_c0_g1:904	si_s68	TRINITY_DN9305_c0_g1	893	912	904	-23.10	-15.70	0.67965367965368	6.5	1-7,912-906;9-12,905-902;14-20,900-894	8-8,x-x[BULq];13-13,901-901[SIL];21-21,893-893[UP3]	.(((((((.((((-(((((((&))))))).)))).))))))).	CGAGAGGAUAGAU-GAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9305_c0_g1_904_TPlot.pdf
TRINITY_DN9306_c0_g1:1134	si_s82	TRINITY_DN9306_c0_g1	1122	1143	1134	-28.90	-20.60	0.71280276816609	7.5	1-11,1143-1133;12-17,1131-1126;19-20,1124-1123	x-x,1132-1132[BULt];18-18,1125-1125[SIL];21-21,1122-1122[UP3]	.((.((((((.(((((((((((&)))))))))))-)))))).)).	CAGCAGAGGAUGAGGAAGGAGA&UUUCUUUCCUU-UCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9306_c0_g1_1134_TPlot.pdf
TRINITY_DN9306_c0_g1:1135	si_s81	TRINITY_DN9306_c0_g1	1123	1144	1135	-28.90	-21.50	0.743944636678201	6.5	1-12,1144-1133;13-18,1131-1126;20-21,1124-1123	x-x,1132-1132[BULt];19-19,1125-1125[SIL]	((.((((((.((((((((((((&))))))))))))-)))))).))	AGCAGAGGAUGAGGAAGGAGAA&UUUUCUUUCCUU-UCUUCUUCU	2	0.999998016578191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9306_c0_g1_1135_TPlot.pdf
TRINITY_DN9306_c0_g1:1136	si_s80	TRINITY_DN9306_c0_g1	1124	1145	1136	-28.20	-20.80	0.73758865248227	7	2-13,1144-1133;14-19,1131-1126	1-1,1145-1145[UP5];x-x,1132-1132[BULt];20-21,1125-1124[UP3]	..((((((.((((((((((((.&.))))))))))))-))))))..	GCAGAGGAUGAGGAAGGAGAAG&UUUUUCUUUCCUU-UCUUCUUC	4	0.999999999994503	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9306_c0_g1_1136_TPlot.pdf
TRINITY_DN9306_c0_g1:1138	si_s78	TRINITY_DN9306_c0_g1	1126	1147	1138	-26.20	-23.40	0.893129770992366	5	1-15,1147-1133;16-21,1131-1126	x-x,1132-1132[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	AGAGGAUGAGGAAGGAGAAGAA&UUUUUUUCUUUCCUU-UCUUCU	3	0.780913703652669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9306_c0_g1_1138_TPlot.pdf
TRINITY_DN9306_c0_g1:1139	si_s77	TRINITY_DN9306_c0_g1	1127	1148	1139	-25.50	-23.10	0.905882352941176	5	1-16,1148-1133;17-21,1131-1127	x-x,1132-1132[BULt]	(((((.((((((((((((((((&))))))))))))))))-)))))	GAGGAUGAGGAAGGAGAAGAAA&UUUUUUUUCUUUCCUU-UCUUC	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9306_c0_g1_1139_TPlot.pdf
TRINITY_DN9306_c0_g1:1142	si_s74	TRINITY_DN9306_c0_g1	1130	1151	1142	-25.00	-19.00	0.76	6	1-2,1151-1150;4-19,1148-1133;20-21,1131-1130	3-3,1149-1149[SIL];x-x,1132-1132[BULt]	((.((((((((((((((((.((&)).))))))))))))))))-))	GAUGAGGAAGGAGAAGAAAAAG&CUAUUUUUUUUCUUUCCUU-UC	4	0.999979517788343	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9306_c0_g1_1142_TPlot.pdf
TRINITY_DN9306_c0_g1:1143	si_s73	TRINITY_DN9306_c0_g1	1132	1152	1143	-24.00	-20.20	0.841666666666667	6	1-3,1152-1150;5-20,1148-1133	4-4,1149-1149[SIL];21-21,1132-1132[UP3]	.((((((((((((((((.(((&))).)))))))))))))))).	UGAGGAAGGAGAAGAAAAAGA&UCUAUUUUUUUUCUUUCCUUU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9306_c0_g1_1143_TPlot.pdf
TRINITY_DN9306_c0_g1:1144	si_s72	TRINITY_DN9306_c0_g1	1133	1153	1144	-24.10	-20.30	0.842323651452282	6	2-4,1152-1150;6-21,1148-1133	1-1,1153-1153[UP5];5-5,1149-1149[SIL]	((((((((((((((((.(((.&.))).))))))))))))))))	GAGGAAGGAGAAGAAAAAGAC&UUCUAUUUUUUUUCUUUCCUU	3	0.883031343403054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9306_c0_g1_1144_TPlot.pdf
TRINITY_DN9306_c0_g1:2269	si_s88	TRINITY_DN9306_c0_g1	2258	2279	2269	-34.80	-23.20	0.666666666666667	5.5	1-6,2279-2274;7-15,2272-2264;17-20,2262-2259	x-x,2273-2273[BULt];16-16,2263-2263[SIL];21-21,2258-2258[UP3]	.((((.(((((((((.((((((&))))))-))))))))).)))).	AAAGCCAGGAAGAAGAAGAGGA&UCCUUU-CUUCUUCUUCGCUUC	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN9306_c0_g1_2269_TPlot.pdf
TRINITY_DN9308_c0_g1:1183	si_s587	TRINITY_DN9308_c0_g1	1171	1192	1183	-28.70	-19.50	0.679442508710801	8.5	4-12,1189-1181;13-21,1179-1171	1-3,1192-1190[UP5];x-x,1180-1180[BULt]	(((((((((.(((((((((...&...)))))))))-)))))))))	UUUGGAUUUAAUCUAUGAUAAU&AAAAUCAUGGAU-AAAUCCAAG	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s587_TRINITY_DN9308_c0_g1_1183_TPlot.pdf
TRINITY_DN9308_c0_g1:1185	si_s585	TRINITY_DN9308_c0_g1	1173	1194	1185	-27.00	-18.10	0.67037037037037	11	6-14,1189-1181;15-21,1179-1173	1-5,1194-1190[UP5];x-x,1180-1180[BULt]	(((((((.(((((((((.....&.....)))))))))-)))))))	UGGAUUUAAUCUAUGAUAAUAU&AAAAAAUCAUGGAU-AAAUCCA	3	0.917089611448122	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s585_TRINITY_DN9308_c0_g1_1185_TPlot.pdf
TRINITY_DN9309_c0_g4:542	si_s446	TRINITY_DN9309_c0_g4	532	551	542	-21.30	-15.60	0.732394366197183	2	1-12,551-540;14-21,539-532	13-13,x-x[BULq]	((((((((-((((((((((((&)))))))))))).))))))))	UAAUUGUU-UUAUAUGUAAUA&UAUUAUAUAUAACAACAAUUA	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN9309_c0_g4_542_TPlot.pdf
TRINITY_DN930_c0_g1:1474	si_a396	TRINITY_DN930_c0_g1	1463	1483	1474	-24.70	-16.36	0.662348178137652	6	2-14,1482-1470;19-21,1465-1463	1-1,1483-1483[UP5];15-18,1469-1466[SIL]	(((....(((((((((((((.&.)))))))))))))....)))	AACCCGUCAAUUCUAUGUUCG&AGAAUAUAGAAUUGUUUUGUU	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a396_TRINITY_DN930_c0_g1_1474_TPlot.pdf
TRINITY_DN930_c0_g1:851	si_s10	TRINITY_DN930_c0_g1	840	859	851	-23.80	-15.50	0.651260504201681	5.5	1-7,859-853;9-16,852-845;18-21,843-840	8-8,x-x[BULq];17-17,844-844[SIL]	((((.((((((((-(((((((&))))))).)))))))).))))	UCAAAAUAGUGAU-GUAAGUG&UACUUAUUAUUACUAUAUUGA	3	0.999179498838814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN930_c0_g1_851_TPlot.pdf
TRINITY_DN930_c0_g1:864	si_s522	TRINITY_DN930_c0_g1	853	873	864	-23.80	-15.50	0.651260504201681	7.5	1-10,873-864;13-19,861-855	11-12,863-862[SIL];20-21,854-853[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	GUAAGUGAUGAUGAAUUAAGA&UCUUAAUUCGAAAUCAUUUUU	3	0.998463173248435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s522_TRINITY_DN930_c0_g1_864_TPlot.pdf
TRINITY_DN9312_c0_g1:535	si_a783	TRINITY_DN9312_c0_g1	524	544	535	-24.70	-17.20	0.696356275303644	10	4-17,541-528	1-3,544-542[UP5];18-21,527-524[UP3]	....((((((((((((((...&...))))))))))))))....	UUACGGAGAAAUAGAAGAAAC&AACUCUUCUAUUUUUCUAUUU	4	0.99999999500498	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9312_c0_g1_535_TPlot.pdf
TRINITY_DN9314_c0_g1:14	si_s68	TRINITY_DN9314_c0_g1	3	26	14	-23.10	-16.40	0.70995670995671	11	2-5,25-22;6-21,18-3	1-1,26-26[UP5];x-x,21-19[BULt]	((((((((((((((((...((((.&.))))---))))))))))))))))	GAAGAAGAAGAAUAGGUUAGGUUA&CAACU---UCUAUUUUUUUUCUUU	2	0.999995140447987	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9314_c0_g1_14_TPlot.pdf
TRINITY_DN9314_c0_g1:16	si_s82	TRINITY_DN9314_c0_g1	4	25	16	-28.90	-19.10	0.660899653979239	10	3-5,23-21;8-10,18-16;11-21,14-4	1-2,25-24[UP5];6-7,20-19[SIL];x-x,15-15[BULt]	(((((((((((.(((..(((..&..)))..)))-)))))))))))	AAGAAGAAGAAUAGGUUAGGUU&UUUCUUUCCU-UUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9314_c0_g1_16_TPlot.pdf
TRINITY_DN931_c0_g1:1445	si_a637	TRINITY_DN931_c0_g1	1434	1454	1445	-25.80	-18.30	0.709302325581395	7.5	1-13,1454-1442;15-19,1440-1436	14-14,1441-1441[SIL];20-21,1435-1434[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UGGUUGCGUAAAGAGAUUGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN931_c0_g1_1445_TPlot.pdf
TRINITY_DN931_c0_g1:1447	si_a635	TRINITY_DN931_c0_g1	1436	1456	1447	-26.10	-17.90	0.685823754789272	8.5	3-15,1454-1442;17-21,1440-1436	1-2,1456-1455[UP5];16-16,1441-1441[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	GUUGCGUAAAGAGAUUGACCG&AUGUCGAUUUUUUUGAGUAAU	3	0.99999954173757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN931_c0_g1_1447_TPlot.pdf
TRINITY_DN931_c0_g1:2260	si_s78	TRINITY_DN931_c0_g1	2249	2269	2260	-26.20	-17.08	0.651908396946565	6	1-14,2269-2256;18-21,2252-2249	15-17,2255-2253[SIL]	((((...((((((((((((((&))))))))))))))...))))	AGGGCGUAGGAAAGAAGAGAA&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN931_c0_g1_2260_TPlot.pdf
TRINITY_DN931_c0_g1:2262	si_s76	TRINITY_DN931_c0_g1	2248	2271	2262	-23.60	-17.80	0.754237288135593	7	2-16,2270-2256;17-21,2252-2248	1-1,2271-2271[UP5];x-x,2255-2253[BULt]	(((((...(((((((((((((((.&.)))))))))))))))---)))))	AAGGGCGUAGGAAAGAAGAGAAAA&AUUUUUUUUCUUUCCU---UUCUU	3	0.999999999999994	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN931_c0_g1_2262_TPlot.pdf
TRINITY_DN931_c0_g1:2263	si_s75	TRINITY_DN931_c0_g1	2249	2272	2263	-24.00	-16.90	0.704166666666667	9	3-17,2270-2256;18-21,2252-2249	1-2,2272-2271[UP5];x-x,2255-2253[BULt]	((((...(((((((((((((((..&..)))))))))))))))---))))	AGGGCGUAGGAAAGAAGAGAAAAA&UAUUUUUUUUCUUUCCU---UUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN931_c0_g1_2263_TPlot.pdf
TRINITY_DN931_c0_g1:2265	si_s73	TRINITY_DN931_c0_g1	2254	2274	2265	-24.00	-16.80	0.7	11	5-19,2270-2256	1-4,2274-2271[UP5];20-21,2255-2254[UP3]	..(((((((((((((((....&....)))))))))))))))..	GUAGGAAAGAAGAGAAAAAAU&UCUAUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN931_c0_g1_2265_TPlot.pdf
TRINITY_DN931_c0_g1:637	si_s158	TRINITY_DN931_c0_g1	626	647	637	-44.90	-33.00	0.734966592427617	9	1-9,647-639;11-18,636-629	10-10,638-637[AILt];19-21,628-626[UP3]	...((((((((..(((((((((&)))))))))-.))))))))...	AAACCCUGGCCUUUGGACUUCC&GGAGGUUCA-UGGCCAGGGGUA	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s158_TRINITY_DN931_c0_g1_637_TPlot.pdf
TRINITY_DN931_c0_g1:765	si_a408	TRINITY_DN931_c0_g1	754	774	765	-20.10	-13.20	0.656716417910448	8	1-6,774-769;9-20,766-755	7-8,768-767[SIL];21-21,754-754[UP3]	.((((((((((((..((((((&))))))..)))))))))))).	GAUUUGGAUGUAACAAAGACA&UGUUUUGUUUAUAUUUAAAUA	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN931_c0_g1_765_TPlot.pdf
TRINITY_DN9320_c0_g1:1176	si_a764	TRINITY_DN9320_c0_g1	1166	1185	1176	-28.90	-20.20	0.698961937716263	6	2-13,1184-1173;15-20,1172-1167	1-1,1185-1185[UP5];14-14,x-x[BULq];21-21,1166-1166[UP3]	.((((((-((((((((((((.&.)))))))))))).)))))).	CUGGAUC-GUCAAGAACUCAU&UUGGGUUUUUGAUUGAUUCAA	4	0.999123035836592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN9320_c0_g1_1176_TPlot.pdf
TRINITY_DN9320_c0_g1:1177	si_a763	TRINITY_DN9320_c0_g1	1167	1186	1177	-28.80	-19.90	0.690972222222222	7	3-14,1184-1173;16-21,1172-1167	1-2,1186-1185[UP5];15-15,x-x[BULq]	((((((-((((((((((((..&..)))))))))))).))))))	UGGAUC-GUCAAGAACUCAUG&UUUGGGUUUUUGAUUGAUUCA	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN9320_c0_g1_1177_TPlot.pdf
TRINITY_DN932_c0_g1:562	si_s455	TRINITY_DN932_c0_g1	551	571	562	-27.30	-19.00	0.695970695970696	9	3-4,569-568;7-20,565-552	1-2,571-570[UP5];5-6,567-566[SIL];21-21,551-551[UP3]	.((((((((((((((..((..&..))..)))))))))))))).	CGUGUGAGAUAAUUGAGGUGU&UAACAACAAUUAUCUCAUAUC	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s455_TRINITY_DN932_c0_g1_562_TPlot.pdf
TRINITY_DN932_c0_g1:748	si_a461	TRINITY_DN932_c0_g1	737	757	748	-21.50	-16.80	0.781395348837209	6.5	1-17,757-741	18-21,740-737[UP3]	....(((((((((((((((((&)))))))))))))))))....	UAGCAUAUAUUGUGUAUAACA&UGUUAUAUAUAAUAUGUAAUU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN932_c0_g1_748_TPlot.pdf
TRINITY_DN9331_c0_g1:511	si_a762	TRINITY_DN9331_c0_g1	500	521	511	-29.70	-20.10	0.676767676767677	10.5	1-6,521-516;7-17,514-504	x-x,515-515[BULt];18-21,503-500[UP3]	....(((((((((((.((((((&))))))-)))))))))))....	UGCACAGUCAGAGGCGCCAAGG&CUUUGG-GUUUUUGAUUGAUUC	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN9331_c0_g1_511_TPlot.pdf
TRINITY_DN9331_c0_g1:527	si_a324	TRINITY_DN9331_c0_g1	517	536	527	-27.50	-18.10	0.658181818181818	5.5	1-3,536-534;5-14,532-523;17-21,521-517	4-4,533-533[SIL];15-16,522-522[AILq]	(((((.-((((((((((.(((&))).))))))))))..)))))	CAAGGC-UGAAGAAAUCUUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.999998487030107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN9331_c0_g1_527_TPlot.pdf
TRINITY_DN9331_c0_g1:726	si_s77	TRINITY_DN9331_c0_g1	714	735	726	-25.50	-17.30	0.67843137254902	9	1-12,735-724;13-19,722-716	x-x,723-723[BULt];20-21,715-714[UP3]	..(((((((.((((((((((((&))))))))))))-)))))))..	ACAGGAGGGCAAAGAGGGGAAA&UUUUUUUUCUUU-CCUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9331_c0_g1_726_TPlot.pdf
TRINITY_DN9331_c0_g1:727	si_s76	TRINITY_DN9331_c0_g1	715	736	727	-23.60	-17.30	0.733050847457627	8	2-13,735-724;14-20,722-716	1-1,736-736[UP5];x-x,723-723[BULt];21-21,715-715[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	CAGGAGGGCAAAGAGGGGAAAG&AUUUUUUUUCUUU-CCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9331_c0_g1_727_TPlot.pdf
TRINITY_DN9331_c0_g1:728	si_s75	TRINITY_DN9331_c0_g1	716	737	728	-24.00	-17.30	0.720833333333333	9	3-14,735-724;15-21,722-716	1-2,737-736[UP5];x-x,723-723[BULt]	(((((((.((((((((((((..&..))))))))))))-)))))))	AGGAGGGCAAAGAGGGGAAAGG&UAUUUUUUUUCUUU-CCUUUCU	2	0.999999999978623	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9331_c0_g1_728_TPlot.pdf
TRINITY_DN9331_c0_g1:729	si_s83	TRINITY_DN9331_c0_g1	718	738	729	-30.90	-20.70	0.669902912621359	7	2-14,737-725;17-21,722-718	1-1,738-738[UP5];15-16,724-723[SIL]	(((((..(((((((((((((.&.)))))))))))))..)))))	GAGGGCAAAGAGGGGAAAGGU&UUCUUUCCUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9331_c0_g1_729_TPlot.pdf
TRINITY_DN9331_c0_g1:730	si_s82	TRINITY_DN9331_c0_g1	716	739	730	-28.90	-20.00	0.69204152249135	10.5	3-14,737-726;15-21,722-716	1-2,739-738[UP5];x-x,725-723[BULt]	(((((((...((((((((((((..&..))))))))))))---)))))))	AGGAGGGCAAAGAGGGGAAAGGUU&UUUCUUUCCUUUCU---UCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9331_c0_g1_730_TPlot.pdf
TRINITY_DN9331_c0_g1:731	si_s81	TRINITY_DN9331_c0_g1	717	740	731	-28.90	-19.30	0.667820069204152	12.5	4-15,737-726;16-21,722-717	1-3,740-738[UP5];x-x,725-723[BULt]	((((((...((((((((((((...&...))))))))))))---))))))	GGAGGGCAAAGAGGGGAAAGGUUG&UUUUCUUUCCUUUCU---UCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9331_c0_g1_731_TPlot.pdf
TRINITY_DN9335_c0_g1:2447	si_s532	TRINITY_DN9335_c0_g1	2436	2456	2447	-28.70	-19.50	0.679442508710801	11	5-19,2452-2438	1-4,2456-2453[UP5];20-21,2437-2436[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAGUUGGAUCGAAAAUGGAGC&AAAUCAUUUUUGAUCCGAUCA	4	0.985472089259289	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN9335_c0_g1_2447_TPlot.pdf
TRINITY_DN9335_c0_g1:2448	si_s531	TRINITY_DN9335_c0_g1	2437	2457	2448	-30.00	-19.50	0.65	12	6-20,2452-2438	1-5,2457-2453[UP5];21-21,2437-2437[UP3]	.(((((((((((((((.....&.....))))))))))))))).	AGUUGGAUCGAAAAUGGAGCU&GAAAUCAUUUUUGAUCCGAUC	4	0.981388494099879	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN9335_c0_g1_2448_TPlot.pdf
TRINITY_DN9336_c0_g3:3968	si_a704	TRINITY_DN9336_c0_g3	3956	3977	3968	-29.30	-19.40	0.662116040955631	6	3-15,3975-3963;16-20,3961-3957	1-2,3977-3976[UP5];x-x,3962-3962[BULt];21-21,3956-3956[UP3]	.(((((.(((((((((((((..&..)))))))))))))-))))).	UUUAUUAUUGGAAUGUACUAUA&ACUGGUACAUUCCAA-AAUAAU	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a704_TRINITY_DN9336_c0_g3_3968_TPlot.pdf
TRINITY_DN933_c0_g1:1405	si_a446	TRINITY_DN933_c0_g1	1394	1414	1405	-25.50	-17.30	0.67843137254902	9.5	4-12,1411-1403;14-19,1401-1396	1-3,1414-1412[UP5];13-13,1402-1402[SIL];20-21,1395-1394[UP3]	..((((((.(((((((((...&...))))))))).))))))..	UGAGCAACUAUUGUCUCAGUG&AUAUGAGAUAAUUGUUGUUAU	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN933_c0_g1_1405_TPlot.pdf
TRINITY_DN933_c0_g1:392	si_a98	TRINITY_DN933_c0_g1	381	401	392	-26.40	-20.50	0.776515151515152	7	1-14,401-388	15-21,387-381[UP3]	.......((((((((((((((&)))))))))))))).......	AGCAAUUUCUUCGUUACCUUU&AAAGGUAACGAAGAUAAAAUA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a98_TRINITY_DN933_c0_g1_392_TPlot.pdf
TRINITY_DN933_c0_g1:398	si_a92	TRINITY_DN933_c0_g1	387	407	398	-28.60	-20.70	0.723776223776224	12	7-20,401-388	1-6,407-402[UP5];21-21,387-387[UP3]	.((((((((((((((......&......)))))))))))))).	UUCUUCGUUACCUUUAAGAUU&UUAAGAAAAGGUAACGAAGAU	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a92_TRINITY_DN933_c0_g1_398_TPlot.pdf
TRINITY_DN933_c0_g1:399	si_a91	TRINITY_DN933_c0_g1	388	408	399	-28.50	-20.60	0.72280701754386	13	8-21,401-388	1-7,408-402[UP5]	((((((((((((((.......&.......))))))))))))))	UCUUCGUUACCUUUAAGAUUC&AUUAAGAAAAGGUAACGAAGA	2	0.117027734550182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a91_TRINITY_DN933_c0_g1_399_TPlot.pdf
TRINITY_DN933_c0_g1:400	si_a90	TRINITY_DN933_c0_g1	389	409	400	-27.90	-18.50	0.663082437275986	15	9-21,401-389	1-8,409-402[UP5]	(((((((((((((........&........)))))))))))))	CUUCGUUACCUUUAAGAUUCG&UAUUAAGAAAAGGUAACGAAG	2	0.421681514244161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a90_TRINITY_DN933_c0_g1_400_TPlot.pdf
TRINITY_DN933_c0_g2:5712	si_a72	TRINITY_DN933_c0_g2	5700	5721	5712	-21.90	-16.20	0.73972602739726	7	2-12,5720-5710;13-19,5708-5702	1-1,5721-5721[UP5];x-x,5709-5709[BULt];20-21,5701-5700[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	ACGAUGGAAUGACAAUUUGAAC&UUUCAAAUUGUU-UUUCAUUAU	3	0.999381992081242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN933_c0_g2_5712_TPlot.pdf
TRINITY_DN933_c0_g2:5713	si_a71	TRINITY_DN933_c0_g2	5701	5722	5713	-23.30	-16.20	0.695278969957081	6.5	3-13,5720-5710;14-20,5708-5702	1-2,5722-5721[UP5];x-x,5709-5709[BULt];21-21,5701-5701[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	CGAUGGAAUGACAAUUUGAACC&CUUUCAAAUUGUU-UUUCAUUA	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN933_c0_g2_5713_TPlot.pdf
TRINITY_DN933_c0_g2:5714	si_a70	TRINITY_DN933_c0_g2	5702	5723	5714	-23.90	-16.00	0.669456066945607	7.5	4-14,5720-5710;15-21,5708-5702	1-3,5723-5721[UP5];x-x,5709-5709[BULt]	(((((((.(((((((((((...&...)))))))))))-)))))))	GAUGGAAUGACAAUUUGAACCC&UCUUUCAAAUUGUU-UUUCAUU	3	0.999999999851826	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN933_c0_g2_5714_TPlot.pdf
TRINITY_DN9340_c1_g1:1017	si_a642	TRINITY_DN9340_c1_g1	1005	1026	1017	-25.90	-17.10	0.66023166023166	9.5	3-18,1024-1009;19-19,1007-1007	1-2,1026-1025[UP5];x-x,1008-1008[BULt];20-21,1006-1005[UP3]	..(.((((((((((((((((..&..))))))))))))))))-)..	UGGAAUGUAUUGCUCAGAGAUU&UUUUUUUGAGUAAUAUAU-CGG	3	0.999552981717631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN9340_c1_g1_1017_TPlot.pdf
TRINITY_DN9340_c1_g1:1018	si_a641	TRINITY_DN9340_c1_g1	1006	1027	1018	-23.60	-17.10	0.724576271186441	10.5	4-19,1024-1009;20-20,1007-1007	1-3,1027-1025[UP5];x-x,1008-1008[BULt];21-21,1006-1006[UP3]	.(.((((((((((((((((...&...))))))))))))))))-).	GGAAUGUAUUGCUCAGAGAUUU&AUUUUUUUGAGUAAUAUAU-CG	4	0.928797116002604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN9340_c1_g1_1018_TPlot.pdf
TRINITY_DN9340_c1_g1:1019	si_a640	TRINITY_DN9340_c1_g1	1008	1028	1019	-24.10	-17.10	0.70954356846473	11	5-20,1024-1009	1-4,1028-1025[UP5];21-21,1008-1008[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUGUAUUGCUCAGAGAUUUA&GAUUUUUUUGAGUAAUAUAUC	3	0.963107586779423	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN9340_c1_g1_1019_TPlot.pdf
TRINITY_DN9340_c1_g1:1020	si_a639	TRINITY_DN9340_c1_g1	1009	1029	1020	-23.60	-17.10	0.724576271186441	12	6-21,1024-1009	1-5,1029-1025[UP5]	((((((((((((((((.....&.....))))))))))))))))	AUGUAUUGCUCAGAGAUUUAG&CGAUUUUUUUGAGUAAUAUAU	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN9340_c1_g1_1020_TPlot.pdf
TRINITY_DN9340_c1_g1:1021	si_a638	TRINITY_DN9340_c1_g1	1010	1030	1021	-24.40	-16.56	0.678688524590164	11	1-2,1030-1029;7-21,1024-1010	3-6,1028-1025[SIL]	(((((((((((((((....((&))....)))))))))))))))	UGUAUUGCUCAGAGAUUUAGA&UCGAUUUUUUUGAGUAAUAUA	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN9340_c1_g1_1021_TPlot.pdf
TRINITY_DN9340_c1_g1:1121	si_a545	TRINITY_DN9340_c1_g1	1110	1135	1121	-28.10	-18.30	0.651245551601424	14	1-8,1135-1128;9-10,1122-1121;12-20,1119-1111	x-x,1127-1123[BULt];11-11,1120-1120[SIL];21-21,1110-1110[UP3]	.(((((((((.((.....((((((((&))))))))-----)).))))))))).	UUGAAGAAGUCGAAAUAUUUGAACCG&CGGUUCAA-----UCUAUUUCUUUAU	4	0.999996804497116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN9340_c1_g1_1121_TPlot.pdf
TRINITY_DN9340_c1_g1:667	si_s73	TRINITY_DN9340_c1_g1	656	676	667	-24.00	-18.30	0.7625	4.5	1-5,676-672;7-15,670-662;17-21,660-656	6-6,671-671[SIL];16-16,661-661[SIL]	(((((.(((((((((.(((((&))))).))))))))).)))))	AAAGGUGAGAAAAAAUAUGGA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999568740314	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9340_c1_g1_667_TPlot.pdf
TRINITY_DN9340_c1_g1:668	si_s72	TRINITY_DN9340_c1_g1	657	677	668	-24.10	-18.30	0.759336099585062	4.5	1-6,677-672;8-16,670-662;18-21,660-657	7-7,671-671[SIL];17-17,661-661[SIL]	((((.(((((((((.((((((&)))))).))))))))).))))	AAGGUGAGAAAAAAUAUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	0.999999866704764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9340_c1_g1_668_TPlot.pdf
TRINITY_DN9340_c1_g1:669	si_s71	TRINITY_DN9340_c1_g1	658	678	669	-25.70	-17.60	0.684824902723736	5.5	2-7,677-672;9-17,670-662;19-21,660-658	1-1,678-678[UP5];8-8,671-671[SIL];18-18,661-661[SIL]	(((.(((((((((.((((((.&.)))))).))))))))).)))	AGGUGAGAAAAAAUAUGGAAA&CUUCUAUUUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9340_c1_g1_669_TPlot.pdf
TRINITY_DN9341_c0_g2:276	si_s78	TRINITY_DN9341_c0_g2	265	285	276	-26.20	-27.50	1	1.5	1-21,285-265	NA	(((((((((((((((((((((&)))))))))))))))))))))	GGAAGAAAGGAAAGAAGAAAA&UUUUUUUCUUUCCUUUCUUCU	1	0.000492670334126588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9341_c0_g2_276_TPlot.pdf
TRINITY_DN9341_c0_g2:282	si_s72	TRINITY_DN9341_c0_g2	271	291	282	-24.10	-17.60	0.730290456431535	10	6-21,286-271	1-5,291-287[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAGGAAAGAAGAAAAACGUAU&UUCUAUUUUUUUUCUUUCCUU	1	0.266166569634247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9341_c0_g2_282_TPlot.pdf
TRINITY_DN9341_c0_g3:442	si_a69	TRINITY_DN9341_c0_g3	431	452	442	-24.00	-16.60	0.691666666666667	8.5	2-9,451-444;11-21,441-431	1-1,452-452[UP5];10-10,443-442[AILt]	(((((((((((..((((((((.&.))))))))-.)))))))))))	GUGGGGAGCAAACUUGAAAGGU&UUCUUUCAA-AUUGUUUUUCAU	4	0.999999846289191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN9341_c0_g3_442_TPlot.pdf
TRINITY_DN9341_c1_g2:1293	si_s80	TRINITY_DN9341_c1_g2	1282	1300	1293	-28.20	-18.50	0.656028368794326	7.5	1-6,1300-1295;9-19,1294-1284	7-8,x-x[BULq];20-21,1283-1282[UP3]	..(((((((((((--((((((&))))))..)))))))))))..	AUGGAAGAAAGGA--GAAAGA&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9341_c1_g2_1293_TPlot.pdf
TRINITY_DN9341_c1_g2:1294	si_s79	TRINITY_DN9341_c1_g2	1283	1301	1294	-26.20	-18.90	0.721374045801527	7	1-7,1301-1295;10-20,1294-1284	8-9,x-x[BULq];21-21,1283-1283[UP3]	.(((((((((((--(((((((&)))))))..))))))))))).	UGGAAGAAAGGA--GAAAGAG&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9341_c1_g2_1294_TPlot.pdf
TRINITY_DN934_c0_g1:1540	si_s438	TRINITY_DN934_c0_g1	1530	1549	1540	-21.20	-13.80	0.650943396226415	3.5	1-13,1549-1537;15-20,1536-1531	14-14,x-x[BULq];21-21,1530-1530[UP3]	.((((((-(((((((((((((&))))))))))))).)))))).	AUUAUAU-UAGUAUGUAAUUG&UAAUUACAUAUUAUAUAUAAC	3	0.999656416798181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s438_TRINITY_DN934_c0_g1_1540_TPlot.pdf
TRINITY_DN934_c0_g1:1541	si_s437	TRINITY_DN934_c0_g1	1531	1550	1541	-19.70	-13.80	0.700507614213198	4	2-14,1549-1537;16-21,1536-1531	1-1,1550-1550[UP5];15-15,x-x[BULq]	((((((-(((((((((((((.&.))))))))))))).))))))	UUAUAU-UAGUAUGUAAUUGA&AUAAUUACAUAUUAUAUAUAA	4	0.998500079383127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN934_c0_g1_1541_TPlot.pdf
TRINITY_DN9352_c0_g1:110	si_a641	TRINITY_DN9352_c0_g1	100	119	110	-23.60	-15.50	0.656779661016949	8.5	3-12,117-108;15-21,106-100	1-2,119-118[UP5];13-14,107-107[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	CGAUAUGA-GCUUAAGAAACU&AUUUUUUUGAGUAAUAUAUCG	4	0.999997117861142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN9352_c0_g1_110_TPlot.pdf
TRINITY_DN9355_c0_g1:216	si_s729	TRINITY_DN9355_c0_g1	205	225	216	-32.10	-21.50	0.669781931464174	5	2-10,224-216;12-20,214-206	1-1,225-225[UP5];11-11,215-215[SIL];21-21,205-205[UP3]	.(((((((((.(((((((((.&.))))))))).))))))))).	AAUUUACCUGGCUAGAUAAUC&UAUUAUCUAGACGGGUGAAUA	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s729_TRINITY_DN9355_c0_g1_216_TPlot.pdf
TRINITY_DN9355_c0_g1:217	si_s728	TRINITY_DN9355_c0_g1	206	226	217	-31.90	-21.20	0.664576802507837	6	3-11,224-216;13-21,214-206	1-2,226-225[UP5];12-12,215-215[SIL]	(((((((((.(((((((((..&..))))))))).)))))))))	AUUUACCUGGCUAGAUAAUCU&AUAUUAUCUAGACGGGUGAAU	3	0.943562885059277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN9355_c0_g1_217_TPlot.pdf
TRINITY_DN9355_c0_g1:281	si_s83	TRINITY_DN9355_c0_g1	258	290	281	-30.90	-20.30	0.656957928802589	23	1-10,290-281;11-15,269-265;16-21,263-258	x-x,280-270[BULt];x-x,264-264[BULt]	((((((.(((((...........((((((((((&))))))))))-----------)))))-))))))	GAAGAAUGAAGACAUAUUUGAUGAAGGAAAGAA&UUCUUUCCUU-----------UCUUC-UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9355_c0_g1_281_TPlot.pdf
TRINITY_DN9355_c0_g1:43	si_a819	TRINITY_DN9355_c0_g1	32	52	43	-28.90	-19.00	0.657439446366782	4.5	1-13,52-40;15-19,38-34	14-14,39-39[SIL];20-21,33-32[UP3]	..(((((.(((((((((((((&))))))))))))).)))))..	UCUUCUUCUUUUUCUUCUUCU&AGAAGAAGAAAGGAAAGAAAA	4	0.999356558738347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a819_TRINITY_DN9355_c0_g1_43_TPlot.pdf
TRINITY_DN9355_c0_g1:50	si_a812	TRINITY_DN9355_c0_g1	39	59	50	-34.80	-24.10	0.692528735632184	5	1-2,59-58;4-20,56-40	3-3,57-57[SIL];21-21,39-39[UP3]	.(((((((((((((((((.((&)).))))))))))))))))).	CUUUUUCUUCUUCUUCGUCUC&GAAGCGAAGAAGAAGAAAGGA	4	0.795964574395021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a812_TRINITY_DN9355_c0_g1_50_TPlot.pdf
TRINITY_DN9355_c0_g1:51	si_a811	TRINITY_DN9355_c0_g1	40	60	51	-35.30	-24.10	0.68271954674221	5	2-3,59-58;5-21,56-40	1-1,60-60[UP5];4-4,57-57[SIL]	(((((((((((((((((.((.&.)).)))))))))))))))))	UUUUUCUUCUUCUUCGUCUCC&CGAAGCGAAGAAGAAGAAAGG	2	0.495676920638754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a811_TRINITY_DN9355_c0_g1_51_TPlot.pdf
TRINITY_DN9355_c0_g1:52	si_a810	TRINITY_DN9355_c0_g1	41	61	52	-35.30	-23.50	0.6657223796034	6.5	3-4,59-58;6-21,56-41	1-2,61-60[UP5];5-5,57-57[SIL]	((((((((((((((((.((..&..)).))))))))))))))))	UUUUCUUCUUCUUCGUCUCCU&CCGAAGCGAAGAAGAAGAAAG	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a810_TRINITY_DN9355_c0_g1_52_TPlot.pdf
TRINITY_DN9355_c0_g1:53	si_a809	TRINITY_DN9355_c0_g1	42	62	53	-34.70	-23.00	0.662824207492795	8	4-5,59-58;7-21,56-42	1-3,62-60[UP5];6-6,57-57[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	UUUCUUCUUCUUCGUCUCCUU&UCCGAAGCGAAGAAGAAGAAA	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a809_TRINITY_DN9355_c0_g1_53_TPlot.pdf
TRINITY_DN9359_c0_g1:166	si_a697	TRINITY_DN9359_c0_g1	155	175	166	-35.50	-24.30	0.684507042253521	5.5	1-5,175-171;7-19,169-157	6-6,170-170[SIL];20-21,156-155[UP3]	..(((((((((((((.(((((&))))).)))))))))))))..	CUGAGUGUACUAGUUCUGUUC&GAACACAACUGGUACAUUCCA	3	0.466106924316671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a697_TRINITY_DN9359_c0_g1_166_TPlot.pdf
TRINITY_DN9359_c0_g1:167	si_a696	TRINITY_DN9359_c0_g1	156	176	167	-36.30	-24.40	0.672176308539945	5.5	2-6,175-171;8-20,169-157	1-1,176-176[UP5];7-7,170-170[SIL];21-21,156-156[UP3]	.(((((((((((((.(((((.&.))))).))))))))))))).	UGAGUGUACUAGUUCUGUUCA&CGAACACAACUGGUACAUUCC	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a696_TRINITY_DN9359_c0_g1_167_TPlot.pdf
TRINITY_DN9359_c0_g1:5125	si_s42	TRINITY_DN9359_c0_g1	5111	5134	5125	-24.90	-16.30	0.654618473895582	8.5	1-11,5134-5124;12-14,5121-5119;15-19,5117-5113	x-x,5123-5122[BULt];x-x,5118-5118[BULt];20-21,5112-5111[UP3]	..(((((.(((..(((((((((((&)))))))))))--)))-)))))..	ACGAGAUGCCAAGAUUAUUGAAGA&UCUUUAAUAAU--UGG-AUUUCAA	3	0.999543840123241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN9359_c0_g1_5125_TPlot.pdf
TRINITY_DN9359_c0_g1:5884	si_s728	TRINITY_DN9359_c0_g1	5874	5893	5884	-31.90	-22.20	0.695924764890282	7	2-11,5892-5883;14-21,5881-5874	1-1,5893-5893[UP5];12-13,5882-5882[AILq]	((((((((.-((((((((((.&.))))))))))..))))))))	GUUCGCCCC-CUGGAUAGUAC&AUAUUAUCUAGACGGGUGAAU	3	0.703180676485418	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s728_TRINITY_DN9359_c0_g1_5884_TPlot.pdf
TRINITY_DN935_c6_g1:821	si_s79	TRINITY_DN935_c6_g1	809	830	821	-26.20	-18.40	0.702290076335878	10	2-11,829-820;12-18,818-812	1-1,830-830[UP5];x-x,819-819[BULt];19-21,811-809[UP3]	...(((((((.((((((((((.&.))))))))))-)))))))...	CUCGAGAGAGAGAGAGAGAGAG&UUUUUUCUUUC-CUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN935_c6_g1_821_TPlot.pdf
TRINITY_DN935_c6_g1:823	si_s77	TRINITY_DN935_c6_g1	811	832	823	-25.50	-20.30	0.796078431372549	8	2-13,831-820;14-20,818-812	1-1,832-832[UP5];x-x,819-819[BULt];21-21,811-811[UP3]	.(((((((.((((((((((((.&.))))))))))))-))))))).	CGAGAGAGAGAGAGAGAGAGAG&UUUUUUUUCUUUC-CUUUCUUC	4	0.99999805292576	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN935_c6_g1_823_TPlot.pdf
TRINITY_DN935_c6_g1:825	si_s75	TRINITY_DN935_c6_g1	813	834	825	-24.00	-19.10	0.795833333333333	10	4-15,831-820;16-21,818-813	1-3,834-832[UP5];x-x,819-819[BULt]	((((((.((((((((((((...&...))))))))))))-))))))	AGAGAGAGAGAGAGAGAGAGAG&UAUUUUUUUUCUUUC-CUUUCU	3	0.999921615402881	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN935_c6_g1_825_TPlot.pdf
TRINITY_DN9369_c0_g1:1198	si_a230	TRINITY_DN9369_c0_g1	1187	1207	1198	-26.90	-18.70	0.695167286245353	6	2-17,1206-1191	1-1,1207-1207[UP5];18-21,1190-1187[UP3]	....((((((((((((((((.&.))))))))))))))))....	AAAUAUUGAUUAUGGAAACAA&AUGUUUCUAUAAUCAAUUCGA	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a230_TRINITY_DN9369_c0_g1_1198_TPlot.pdf
TRINITY_DN9375_c0_g2:168	si_a356	TRINITY_DN9375_c0_g2	156	177	168	-26.90	-18.70	0.695167286245353	5	1-15,177-163;16-21,161-156	x-x,162-162[BULt]	((((((.(((((((((((((((&)))))))))))))))-))))))	GUUUGGCUCAAAAUGGAAUUGA&UUAAUUCUAUUUUGA-UCGGAU	0	0.0852027945084629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN9375_c0_g2_168_TPlot.pdf
TRINITY_DN9375_c0_g2:169	si_a355	TRINITY_DN9375_c0_g2	157	178	169	-26.80	-18.70	0.697761194029851	4.5	1-16,178-163;17-21,161-157	x-x,162-162[BULt]	(((((.((((((((((((((((&))))))))))))))))-)))))	UUUGGCUCAAAAUGGAAUUGAU&AUUAAUUCUAUUUUGA-UCGGA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a355_TRINITY_DN9375_c0_g2_169_TPlot.pdf
TRINITY_DN9375_c0_g2:170	si_a354	TRINITY_DN9375_c0_g2	158	179	170	-26.20	-18.20	0.694656488549618	5	1-17,179-163;18-21,161-158	x-x,162-162[BULt]	((((.(((((((((((((((((&)))))))))))))))))-))))	UUGGCUCAAAAUGGAAUUGAUG&UAUUAAUUCUAUUUUGA-UCGG	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a354_TRINITY_DN9375_c0_g2_170_TPlot.pdf
TRINITY_DN9375_c0_g2:172	si_a352	TRINITY_DN9375_c0_g2	161	181	172	-22.50	-17.40	0.773333333333333	8	3-19,179-163	1-2,181-180[UP5];20-21,162-161[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	GCUCAAAAUGGAAUUGAUGGA&AAUAUUAAUUCUAUUUUGAUC	3	0.507635083453482	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN9375_c0_g2_172_TPlot.pdf
TRINITY_DN9375_c0_g2:173	si_a351	TRINITY_DN9375_c0_g2	162	182	173	-20.50	-17.40	0.848780487804878	8.5	4-20,179-163	1-3,182-180[UP5];21-21,162-162[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CUCAAAAUGGAAUUGAUGGAG&AAAUAUUAAUUCUAUUUUGAU	2	0.159909860236127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a351_TRINITY_DN9375_c0_g2_173_TPlot.pdf
TRINITY_DN9375_c0_g2:174	si_a350	TRINITY_DN9375_c0_g2	163	183	174	-20.30	-17.30	0.852216748768473	9.5	5-21,179-163	1-4,183-180[UP5]	(((((((((((((((((....&....)))))))))))))))))	UCAAAAUGGAAUUGAUGGAGU&AAAAUAUUAAUUCUAUUUUGA	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a350_TRINITY_DN9375_c0_g2_174_TPlot.pdf
TRINITY_DN9375_c0_g2:175	si_a349	TRINITY_DN9375_c0_g2	164	184	175	-21.30	-15.20	0.713615023474178	11.5	6-21,179-164	1-5,184-180[UP5]	((((((((((((((((.....&.....))))))))))))))))	CAAAAUGGAAUUGAUGGAGUU&GAAAAUAUUAAUUCUAUUUUG	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a349_TRINITY_DN9375_c0_g2_175_TPlot.pdf
TRINITY_DN9376_c0_g1:3602	si_s423	TRINITY_DN9376_c0_g1	3591	3611	3602	-21.50	-14.50	0.674418604651163	10	4-17,3608-3595	1-3,3611-3609[UP5];18-21,3594-3591[UP3]	....((((((((((((((...&...))))))))))))))....	AAAAUAUUGUUAUAUAGGUUG&UAUUCUAUAUAACAAUAAUUA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s423_TRINITY_DN9376_c0_g1_3602_TPlot.pdf
TRINITY_DN9376_c0_g1:602	si_a495	TRINITY_DN9376_c0_g1	591	611	602	-31.90	-21.20	0.664576802507837	10.5	1-4,611-608;6-18,606-594	5-5,607-607[SIL];19-21,593-591[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	AUUGGACGAAAGGCGGGGUGU&AUAUGUCGUUUUUCGUCUUCC	4	0.99999999929713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN9376_c0_g1_602_TPlot.pdf
TRINITY_DN9376_c0_g1:749	si_a544	TRINITY_DN9376_c0_g1	738	767	749	-28.90	-18.96	0.656055363321799	25	1-7,767-761;10-21,749-738	8-9,760-750[AILt]	((((((((((((...........(((((((&)))))))---------..))))))))))))	UGGAGAGGUGGAGCUAUAAGAAGGAACCGA&UCGGUUC---------AAUCUAUUUCUUUA	3	0.99980507766631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN9376_c0_g1_749_TPlot.pdf
TRINITY_DN9376_c0_g1:881	si_a851	TRINITY_DN9376_c0_g1	869	890	881	-29.30	-19.30	0.658703071672355	7	1-3,890-888;6-15,885-876;16-21,874-869	4-5,887-886[SIL];x-x,875-875[BULt]	((((((.((((((((((..(((&)))..))))))))))-))))))	UGAUUGUGGUUUUAAGUCUGCA&UGCUAACUUGAAAUC-CAAUUA	2	0.79416098612723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a851_TRINITY_DN9376_c0_g1_881_TPlot.pdf
TRINITY_DN9376_c0_g2:1307	si_s72	TRINITY_DN9376_c0_g2	1296	1316	1307	-24.10	-15.70	0.651452282157676	5	1-5,1316-1312;7-13,1310-1304;15-21,1302-1296	6-6,1311-1311[SIL];14-14,1303-1303[SIL]	(((((((.(((((((.(((((&))))).))))))).)))))))	GAGGAAAAGAAAAAACUGGAA&UUCUAUUUUUUUUCUUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9376_c0_g2_1307_TPlot.pdf
TRINITY_DN9376_c0_g2:1387	si_s73	TRINITY_DN9376_c0_g2	1376	1402	1387	-24.00	-16.40	0.683333333333333	17	1-8,1402-1395;9-18,1388-1379	x-x,1394-1389[BULt];19-21,1378-1376[UP3]	...((((((((((......((((((((&))))))))------))))))))))...	UGCGGAAAGAAAAACCGGCGAAAUGGA&UCUAUUUU------UUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9376_c0_g2_1387_TPlot.pdf
TRINITY_DN9376_c0_g2:1388	si_s72	TRINITY_DN9376_c0_g2	1377	1403	1388	-24.10	-16.50	0.684647302904564	17	2-9,1402-1395;10-19,1388-1379	1-1,1403-1403[UP5];x-x,1394-1389[BULt];20-21,1378-1377[UP3]	..((((((((((......((((((((.&.))))))))------))))))))))..	GCGGAAAGAAAAACCGGCGAAAUGGAC&UUCUAUUUU------UUUUCUUUCCUU	2	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9376_c0_g2_1388_TPlot.pdf
TRINITY_DN9376_c0_g2:1778	si_s97	TRINITY_DN9376_c0_g2	1765	1788	1778	-36.30	-27.00	0.743801652892562	6	1-8,1788-1781;9-16,1779-1772;17-20,1769-1766	x-x,1780-1780[BULt];x-x,1771-1770[BULt];21-21,1765-1765[UP3]	.((((..((((((((.((((((((&))))))))-))))))))--)))).	CUCCAGGAUCCGAAGAUGAAGAAG&CUUCUUCG-CUUCGGAU--UGGAA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN9376_c0_g2_1778_TPlot.pdf
TRINITY_DN9376_c0_g2:872	si_a148	TRINITY_DN9376_c0_g2	861	881	872	-30.30	-22.30	0.735973597359736	8	1-9,881-873;11-19,871-863	10-10,872-872[SIL];20-21,862-861[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	GAGGCUUUAGACCAGCAGCGA&UCGUUGUUGUUUUAAGGUCAA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN9376_c0_g2_872_TPlot.pdf
TRINITY_DN9379_c0_g1:1090	si_a461	TRINITY_DN9379_c0_g1	1079	1099	1090	-21.50	-14.10	0.655813953488372	8.5	2-11,1098-1089;13-17,1087-1083	1-1,1099-1099[UP5];12-12,1088-1088[SIL];18-21,1082-1079[UP3]	....(((((.((((((((((.&.)))))))))).)))))....	AGGGACGUAAUAUAUAUGACG&UGUUAUAUAUAAUAUGUAAUU	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN9379_c0_g1_1090_TPlot.pdf
TRINITY_DN9379_c0_g1:1091	si_a460	TRINITY_DN9379_c0_g1	1080	1100	1091	-21.60	-14.50	0.671296296296296	7.5	2-12,1099-1089;14-18,1087-1083	1-1,1100-1100[UP5];13-13,1088-1088[SIL];19-21,1082-1080[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	GGGACGUAAUAUAUAUGACGG&UUGUUAUAUAUAAUAUGUAAU	4	0.9995469916129	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN9379_c0_g1_1091_TPlot.pdf
TRINITY_DN9379_c0_g1:2239	si_s486	TRINITY_DN9379_c0_g1	2228	2248	2239	-18.10	-12.10	0.668508287292818	4	2-8,2247-2241;10-20,2239-2229	1-1,2248-2248[UP5];9-9,2240-2240[SIL];21-21,2228-2228[UP3]	.(((((((((((.(((((((.&.))))))).))))))))))).	UUUUAUAUUUAAUUAAAUAUU&UAUAUUUAUUUAAAUAUAAAC	2	0.980414837821871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN9379_c0_g1_2239_TPlot.pdf
TRINITY_DN937_c0_g1:3030	si_a630	TRINITY_DN937_c0_g1	3019	3038	3030	-25.80	-16.80	0.651162790697674	7	1-5,3038-3034;7-16,3033-3024;19-20,3021-3020	6-6,x-x[BULq];17-18,3023-3022[SIL];21-21,3019-3019[UP3]	.((..((((((((((-(((((&))))).))))))))))..)).	CCACCGAGAUCGACA-GAUAC&GUAUUAUGUCGAUUUUUUUGA	3	0.999999996064119	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a630_TRINITY_DN937_c0_g1_3030_TPlot.pdf
TRINITY_DN937_c0_g1:3207	si_s810	TRINITY_DN937_c0_g1	3196	3216	3207	-27.90	-18.20	0.652329749103943	12	2-15,3215-3202	1-1,3216-3216[UP5];16-21,3201-3196[UP3]	......((((((((((((((.&.))))))))))))))......	AAGUCUGGGGAGGUGGCGGAA&CUUCGUUACCUUUUCUUAAUA	3	0.999999999925553	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN937_c0_g1_3207_TPlot.pdf
TRINITY_DN937_c0_g1:3212	si_a552	TRINITY_DN937_c0_g1	3201	3220	3212	-33.10	-21.70	0.655589123867069	8	1-4,3220-3217;6-9,3216-3213;11-21,3211-3201	5-5,x-x[BULq];10-10,3212-3212[SIL]	(((((((((((.((((-((((&)))).)))).)))))))))))	UGGGGAGGUGGCGGAA-AGAU&AUCUAUUUCUUUAUCUCCCCG	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a552_TRINITY_DN937_c0_g1_3212_TPlot.pdf
TRINITY_DN937_c0_g1:3213	si_a551	TRINITY_DN937_c0_g1	3202	3221	3213	-31.60	-22.10	0.699367088607595	7	1-5,3221-3217;7-10,3216-3213;12-21,3211-3202	6-6,x-x[BULq];11-11,3212-3212[SIL]	((((((((((.((((-(((((&))))).)))).))))))))))	GGGGAGGUGGCGGAA-AGAUU&AAUCUAUUUCUUUAUCUCCCC	2	0.913869468049306	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN937_c0_g1_3213_TPlot.pdf
TRINITY_DN937_c0_g1:3214	si_a550	TRINITY_DN937_c0_g1	3203	3222	3214	-30.90	-22.20	0.718446601941748	6.5	1-6,3222-3217;8-11,3216-3213;13-21,3211-3203	7-7,x-x[BULq];12-12,3212-3212[SIL]	(((((((((.((((-((((((&)))))).)))).)))))))))	GGGAGGUGGCGGAA-AGAUUG&CAAUCUAUUUCUUUAUCUCCC	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN937_c0_g1_3214_TPlot.pdf
TRINITY_DN937_c0_g1:3305	si_s814	TRINITY_DN937_c0_g1	3294	3314	3305	-26.60	-17.90	0.672932330827068	10.5	1-13,3314-3302	14-21,3301-3294[UP3]	........(((((((((((((&)))))))))))))........	UUCUGGAAGAGAAAAGGUGGC&GUUACCUUUUCUUAAUAAUGA	2	0.915986990550228	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s814_TRINITY_DN937_c0_g1_3305_TPlot.pdf
TRINITY_DN937_c0_g1:3306	si_s813	TRINITY_DN937_c0_g1	3295	3315	3306	-27.10	-20.30	0.749077490774908	9.5	1-14,3315-3302	15-21,3301-3295[UP3]	.......((((((((((((((&)))))))))))))).......	UCUGGAAGAGAAAAGGUGGCG&CGUUACCUUUUCUUAAUAAUG	2	0.276460305344234	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s813_TRINITY_DN937_c0_g1_3306_TPlot.pdf
TRINITY_DN937_c0_g1:3308	si_s811	TRINITY_DN937_c0_g1	3297	3317	3308	-26.40	-20.50	0.776515151515152	9.5	2-16,3316-3302	1-1,3317-3317[UP5];17-21,3301-3297[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGGAAGAGAAAAGGUGGCGGU&UUCGUUACCUUUUCUUAAUAA	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s811_TRINITY_DN937_c0_g1_3308_TPlot.pdf
TRINITY_DN937_c0_g1:3310	si_s809	TRINITY_DN937_c0_g1	3299	3319	3310	-28.50	-20.90	0.733333333333333	9	1-2,3319-3318;4-18,3316-3302	3-3,3317-3317[SIL];19-21,3301-3299[UP3]	...(((((((((((((((.((&)).)))))))))))))))...	GAAGAGAAAAGGUGGCGGUGG&UCUUCGUUACCUUUUCUUAAU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN937_c0_g1_3310_TPlot.pdf
TRINITY_DN937_c0_g1:3311	si_s808	TRINITY_DN937_c0_g1	3300	3320	3311	-28.60	-20.90	0.730769230769231	9.5	2-3,3319-3318;5-19,3316-3302	1-1,3320-3320[UP5];4-4,3317-3317[SIL];20-21,3301-3300[UP3]	..(((((((((((((((.((.&.)).)))))))))))))))..	AAGAGAAAAGGUGGCGGUGGC&AUCUUCGUUACCUUUUCUUAA	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN937_c0_g1_3311_TPlot.pdf
TRINITY_DN937_c0_g1:3312	si_s807	TRINITY_DN937_c0_g1	3301	3321	3312	-28.90	-20.90	0.72318339100346	10.5	3-4,3319-3318;6-20,3316-3302	1-2,3321-3320[UP5];5-5,3317-3317[SIL];21-21,3301-3301[UP3]	.(((((((((((((((.((..&..)).))))))))))))))).	AGAGAAAAGGUGGCGGUGGCG&UAUCUUCGUUACCUUUUCUUA	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN937_c0_g1_3312_TPlot.pdf
TRINITY_DN937_c0_g1:3313	si_s806	TRINITY_DN937_c0_g1	3302	3322	3313	-28.60	-20.40	0.713286713286713	11.5	4-5,3319-3318;7-21,3316-3302	1-3,3322-3320[UP5];6-6,3317-3317[SIL]	(((((((((((((((.((...&...)).)))))))))))))))	GAGAAAAGGUGGCGGUGGCGA&UUAUCUUCGUUACCUUUUCUU	3	0.999827372166793	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN937_c0_g1_3313_TPlot.pdf
TRINITY_DN937_c0_g1:3314	si_s805	TRINITY_DN937_c0_g1	3303	3323	3314	-28.60	-19.80	0.692307692307692	9	1-3,3323-3321;5-6,3319-3318;8-21,3316-3303	4-4,3320-3320[SIL];7-7,3317-3317[SIL]	((((((((((((((.((.(((&))).)).))))))))))))))	AGAAAAGGUGGCGGUGGCGAA&UUUAUCUUCGUUACCUUUUCU	3	0.999994583565364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN937_c0_g1_3314_TPlot.pdf
TRINITY_DN9382_c0_g1:948	si_s88	TRINITY_DN9382_c0_g1	931	957	948	-34.80	-22.70	0.652298850574713	10.5	1-14,957-944;15-18,937-934	x-x,943-938[BULt];19-21,933-931[UP3]	...((((......((((((((((((((&))))))))))))))------))))...	CCUGUGACCAGAAAGAAGGAGAAAGGA&UCCUUUCUUCUUCU------UCGCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN9382_c0_g1_948_TPlot.pdf
TRINITY_DN9382_c0_g1:949	si_s87	TRINITY_DN9382_c0_g1	932	958	949	-32.90	-23.10	0.702127659574468	10	1-15,958-944;16-19,937-934	x-x,943-938[BULt];20-21,933-932[UP3]	..((((......(((((((((((((((&)))))))))))))))------))))..	CUGUGACCAGAAAGAAGGAGAAAGGAG&UUCCUUUCUUCUUCU------UCGCUU	4	0.999999999957572	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9382_c0_g1_949_TPlot.pdf
TRINITY_DN9383_c0_g1:74	si_s440	TRINITY_DN9383_c0_g1	60	83	74	-21.60	-14.90	0.689814814814815	11	3-15,81-69;16-20,65-61	1-2,83-82[UP5];x-x,68-66[BULt];21-21,60-60[UP3]	.(((((...(((((((((((((..&..)))))))))))))---))))).	AUGUUAGGUUAUGUGAUGUGUGGA&AUUACAUAUUAUAUA---UAACAA	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN9383_c0_g1_74_TPlot.pdf
TRINITY_DN9383_c0_g1:75	si_s439	TRINITY_DN9383_c0_g1	61	84	75	-21.50	-14.70	0.683720930232558	11.5	4-16,81-69;17-21,65-61	1-3,84-82[UP5];x-x,68-66[BULt]	(((((...(((((((((((((...&...)))))))))))))---)))))	UGUUAGGUUAUGUGAUGUGUGGAA&AAUUACAUAUUAUAUA---UAACA	2	0.944285036812453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN9383_c0_g1_75_TPlot.pdf
TRINITY_DN9384_c0_g1:1231	si_a403	TRINITY_DN9384_c0_g1	1220	1241	1231	-22.00	-14.72	0.669090909090909	8.5	1-9,1241-1233;13-21,1228-1220	10-12,1232-1229[AILt]	(((((((((....(((((((((&)))))))))-...)))))))))	AAAUGUAAAAAAUAACAAUUCU&AGAAUUGUU-UUGUUUAUAUUU	4	0.999999999998649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN9384_c0_g1_1231_TPlot.pdf
TRINITY_DN9384_c0_g1:615	si_s485	TRINITY_DN9384_c0_g1	604	624	615	-18.10	-11.90	0.657458563535912	10	1-14,624-611	15-21,610-604[UP3]	.......((((((((((((((&)))))))))))))).......	CUACAAAUUAGAUGAAUAUGG&CUAUAUUUAUUUAAAUAUAAA	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN9384_c0_g1_615_TPlot.pdf
TRINITY_DN9385_c1_g1:1943	si_s173	TRINITY_DN9385_c1_g1	1932	1952	1943	-39.70	-26.10	0.657430730478589	9.5	1-5,1952-1948;8-15,1945-1938;17-20,1936-1933	6-7,1947-1946[SIL];16-16,1937-1937[SIL];21-21,1932-1932[UP3]	.((((.((((((((..(((((&)))))..)))))))).)))).	AUACUGGGGUAUUUGAGCCCU&GGGGUAAAGAUGCCCGAGUAA	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s173_TRINITY_DN9385_c1_g1_1943_TPlot.pdf
TRINITY_DN9385_c1_g1:3829	si_a855	TRINITY_DN9385_c1_g1	3819	3838	3829	-24.70	-17.30	0.700404858299595	8	3-15,3836-3824;17-20,3823-3820	1-2,3838-3837[UP5];16-16,x-x[BULq];21-21,3819-3819[UP3]	.((((-(((((((((((((..&..))))))))))))).)))).	GUGAU-GUUGGAUUUCGGGAA&AACUUGAAAUCCAAUUAUUAA	3	0.793823186982354	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a855_TRINITY_DN9385_c1_g1_3829_TPlot.pdf
TRINITY_DN9385_c1_g1:3830	si_a854	TRINITY_DN9385_c1_g1	3820	3839	3830	-25.00	-17.10	0.684	9	4-16,3836-3824;18-21,3823-3820	1-3,3839-3837[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	UGAU-GUUGGAUUUCGGGAAC&UAACUUGAAAUCCAAUUAUUA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a854_TRINITY_DN9385_c1_g1_3830_TPlot.pdf
TRINITY_DN9387_c0_g1:4690	si_a753	TRINITY_DN9387_c0_g1	4679	4700	4690	-33.10	-24.00	0.725075528700906	10.5	2-4,4699-4697;6-18,4694-4682	1-1,4700-4700[UP5];5-5,4696-4695[AILt];19-21,4681-4679[UP3]	...(((((((((((((..(((.&.)))-.)))))))))))))...	UUCGACCCAGAGGGGGCGUCAC&AUGA-ACCUCCUUUGGGUUUUU	4	0.943260684026566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN9387_c0_g1_4690_TPlot.pdf
TRINITY_DN9387_c0_g1:839	si_s316	TRINITY_DN9387_c0_g1	828	849	839	-31.50	-20.70	0.657142857142857	8.5	2-3,848-847;4-16,845-833	1-1,849-849[UP5];x-x,846-846[BULt];17-21,832-828[UP3]	.....(((((((((((((.((.&.))-))))))))))))).....	UCAAGAACGAGAAGGACACGAC&UUC-UGUCCUUCUUGUUACAAA	4	0.999999618795197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN9387_c0_g1_839_TPlot.pdf
TRINITY_DN9387_c0_g1:840	si_s315	TRINITY_DN9387_c0_g1	829	850	840	-31.60	-20.70	0.65506329113924	9.5	3-4,848-847;5-17,845-833	1-2,850-849[UP5];x-x,846-846[BULt];18-21,832-829[UP3]	....(((((((((((((.((..&..))-)))))))))))))....	CAAGAACGAGAAGGACACGACC&AUUC-UGUCCUUCUUGUUACAA	3	0.999999836795323	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN9387_c0_g1_840_TPlot.pdf
TRINITY_DN9387_c0_g1:842	si_s313	TRINITY_DN9387_c0_g1	831	852	842	-30.80	-20.70	0.672077922077922	11.5	5-6,848-847;7-19,845-833	1-4,852-849[UP5];x-x,846-846[BULt];20-21,832-831[UP3]	..(((((((((((((.((....&....))-)))))))))))))..	AGAACGAGAAGGACACGACCCU&AAAUUC-UGUCCUUCUUGUUAC	4	0.999992237022873	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN9387_c0_g1_842_TPlot.pdf
TRINITY_DN9387_c0_g1:843	si_s312	TRINITY_DN9387_c0_g1	832	853	843	-29.00	-20.70	0.713793103448276	12.5	6-7,848-847;8-20,845-833	1-5,853-849[UP5];x-x,846-846[BULt];21-21,832-832[UP3]	.(((((((((((((.((.....&.....))-))))))))))))).	GAACGAGAAGGACACGACCCUU&AAAAUUC-UGUCCUUCUUGUUA	2	0.983750209517256	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN9387_c0_g1_843_TPlot.pdf
TRINITY_DN9387_c0_g1:844	si_s311	TRINITY_DN9387_c0_g1	833	855	844	-30.60	-21.70	0.709150326797386	8.5	1-4,855-852;7-8,848-847;9-21,845-833	5-6,851-849[AILt];x-x,846-846[BULt]	(((((((((((((.((...((((&))))-..))-)))))))))))))	AACGAGAAGGACACGACCCUUUC&GAAA-AUUC-UGUCCUUCUUGUU	3	0.971064199693779	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN9387_c0_g1_844_TPlot.pdf
TRINITY_DN9387_c0_g1:847	si_s309	TRINITY_DN9387_c0_g1	835	857	847	-33.80	-23.00	0.680473372781065	9	1-6,857-852;9-10,848-847;11-21,845-835	7-8,851-849[AILt];x-x,846-846[BULt]	(((((((((((.((...((((((&))))))-..))-)))))))))))	CGAGAAGGACACGACCCUUUCGU&GCGAAA-AUUC-UGUCCUUCUUG	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s309_TRINITY_DN9387_c0_g1_847_TPlot.pdf
TRINITY_DN9388_c0_g1:192	si_a792	TRINITY_DN9388_c0_g1	180	201	192	-27.60	-19.10	0.692028985507246	6	1-14,201-188;15-15,186-186;17-20,184-181	x-x,187-187[BULt];16-16,185-185[SIL];21-21,180-180[UP3]	.((((.(.((((((((((((((&))))))))))))))-).)))).	UGGAUAGUGAAGGUAGAAAAGU&AUUUUUCUAUUUUC-CAAUCCG	4	0.998674807104377	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a792_TRINITY_DN9388_c0_g1_192_TPlot.pdf
TRINITY_DN9389_c0_g1:415	si_a314	TRINITY_DN9389_c0_g1	404	424	415	-27.10	-17.70	0.653136531365314	11	2-4,423-421;7-15,418-410	1-1,424-424[UP5];5-6,420-419[SIL];16-21,409-404[UP3]	......(((((((((..(((.&.)))..)))))))))......	AAUCUCCAUGGAUAAUGCCAU&UUGGAUUUAUCCAUGAUUUUU	3	0.999999980519778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a314_TRINITY_DN9389_c0_g1_415_TPlot.pdf
TRINITY_DN9390_c0_g1:1546	si_s80	TRINITY_DN9390_c0_g1	1534	1555	1546	-28.20	-18.80	0.666666666666667	9.5	1-10,1555-1546;11-12,1544-1543;15-21,1540-1534	x-x,1545-1545[BULt];13-14,1542-1541[SIL]	(((((((..((.((((((((((&))))))))))-))..)))))))	GGAGGAGUUAGCGGAGGAGGAG&UUUUUCUUUC-CUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9390_c0_g1_1546_TPlot.pdf
TRINITY_DN9390_c0_g1:1553	si_s812	TRINITY_DN9390_c0_g1	1540	1562	1553	-26.40	-18.38	0.696212121212121	9.5	1-15,1562-1548;18-21,1543-1540	16-17,1547-1544[AILt]	((((....(((((((((((((((&)))))))))))))))--..))))	GUUAGCGGAGGAGGAGGUGAUGG&UCGUUACCUUUUCUU--AAUAAU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s812_TRINITY_DN9390_c0_g1_1553_TPlot.pdf
TRINITY_DN9391_c0_g1:114	si_a138	TRINITY_DN9391_c0_g1	103	123	114	-26.30	-18.90	0.718631178707224	4.5	1-8,123-116;10-21,114-103	9-9,115-115[SIL]	((((((((((((.((((((((&)))))))).))))))))))))	AAUAAUGACGAUGAAUUGCUA&UAGUAAUUAAUCGUUGUUGUU	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a138_TRINITY_DN9391_c0_g1_114_TPlot.pdf
TRINITY_DN9394_c0_g1:1073	si_a785	TRINITY_DN9394_c0_g1	1062	1086	1073	-25.90	-16.90	0.652509652509653	13.5	2-6,1085-1081;7-21,1076-1062	1-1,1086-1086[UP5];x-x,1080-1077[BULt]	(((((((((((((((....(((((.&.)))))----)))))))))))))))	GGAAAUGGGAAGGUGAGAUGAAGAA&CUCUUC----UAUUUUUCUAUUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9394_c0_g1_1073_TPlot.pdf
TRINITY_DN9394_c0_g1:1078	si_s76	TRINITY_DN9394_c0_g1	1067	1087	1078	-23.60	-17.00	0.720338983050847	8	1-7,1087-1081;9-12,1079-1076;14-20,1074-1068	8-8,1080-1080[SIL];13-13,1075-1075[SIL];21-21,1067-1067[UP3]	.(((((((.((((.(((((((&))))))).)))).))))))).	UGGGAAGGUGAGAUGAAGAAU&AUUUUUUUUCUUUCCUUUCUU	2	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9394_c0_g1_1078_TPlot.pdf
TRINITY_DN9394_c0_g1:1079	si_s75	TRINITY_DN9394_c0_g1	1068	1088	1079	-24.00	-18.30	0.7625	6.5	1-8,1088-1081;10-13,1079-1076;15-21,1074-1068	9-9,1080-1080[SIL];14-14,1075-1075[SIL]	(((((((.((((.((((((((&)))))))).)))).)))))))	GGGAAGGUGAGAUGAAGAAUA&UAUUUUUUUUCUUUCCUUUCU	2	0.999993366716197	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9394_c0_g1_1079_TPlot.pdf
TRINITY_DN9394_c0_g1:1080	si_s74	TRINITY_DN9394_c0_g1	1069	1089	1080	-25.00	-17.40	0.696	7	2-9,1088-1081;11-14,1079-1076;16-21,1074-1069	1-1,1089-1089[UP5];10-10,1080-1080[SIL];15-15,1075-1075[SIL]	((((((.((((.((((((((.&.)))))))).)))).))))))	GGAAGGUGAGAUGAAGAAUAA&CUAUUUUUUUUCUUUCCUUUC	2	0.999999999961149	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9394_c0_g1_1080_TPlot.pdf
TRINITY_DN9394_c0_g1:788	si_s8	TRINITY_DN9394_c0_g1	777	799	788	-21.30	-15.00	0.704225352112676	9	1-9,799-791;10-18,788-780	x-x,790-789[BULt];19-21,779-777[UP3]	...(((((((((..(((((((((&)))))))))--)))))))))...	AAAAUGGUGAUAUCAUGAGUAAU&AUUACUUAU--UAUUACUAUAUU	4	0.999140952884432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN9394_c0_g1_788_TPlot.pdf
TRINITY_DN9394_c0_g1:791	si_s7	TRINITY_DN9394_c0_g1	778	800	791	-21.70	-16.10	0.741935483870968	8	1-10,800-791;11-19,788-780	x-x,790-789[BULt];20-21,779-778[UP3]	..(((((((((..((((((((((&))))))))))--)))))))))..	AAAUGGUGAUAUCAUGAGUAAUA&UAUUACUUAU--UAUUACUAUAU	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s7_TRINITY_DN9394_c0_g1_791_TPlot.pdf
TRINITY_DN9394_c0_g1:792	si_s6	TRINITY_DN9394_c0_g1	779	801	792	-21.70	-17.40	0.80184331797235	7	1-11,801-791;12-20,788-780	x-x,790-789[BULt];21-21,779-779[UP3]	.(((((((((..(((((((((((&)))))))))))--))))))))).	AAUGGUGAUAUCAUGAGUAAUAU&AUAUUACUUAU--UAUUACUAUA	4	0.534092090786493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN9394_c0_g1_792_TPlot.pdf
TRINITY_DN9394_c0_g1:795	si_s3	TRINITY_DN9394_c0_g1	782	804	795	-21.20	-17.40	0.820754716981132	4.5	1-14,804-791;15-21,788-782	x-x,790-789[BULt]	(((((((..((((((((((((((&))))))))))))))--)))))))	GGUGAUAUCAUGAGUAAUAUAAG&UUUAUAUUACUUAU--UAUUACU	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s3_TRINITY_DN9394_c0_g1_795_TPlot.pdf
TRINITY_DN9394_c0_g1:797	si_s1	TRINITY_DN9394_c0_g1	784	806	797	-18.70	-13.20	0.705882352941176	7	3-16,804-791;17-21,788-784	1-2,806-805[UP5];x-x,790-789[BULt]	(((((..((((((((((((((..&..))))))))))))))--)))))	UGAUAUCAUGAGUAAUAUAAGUC&UUUUUAUAUUACUUAU--UAUUA	3	0.999978104870914	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN9394_c0_g1_797_TPlot.pdf
TRINITY_DN9398_c0_g2:144	si_s304	TRINITY_DN9398_c0_g2	132	153	144	-32.30	-23.30	0.721362229102167	9	5-13,149-141;14-21,139-132	1-4,153-150[UP5];x-x,140-140[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	AGGACAGACAUUUUCGCGCGAC&GAAUUGCGAAAAU-UCUGUCCU	4	0.295959998063	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s304_TRINITY_DN9398_c0_g2_144_TPlot.pdf
TRINITY_DN9399_c0_g1:1526	si_s889	TRINITY_DN9399_c0_g1	1515	1535	1526	-28.80	-20.40	0.708333333333333	18	10-21,1526-1515	1-9,1535-1527[UP5]	((((((((((((.........&.........))))))))))))	GAGGAGGAAGCCGAAAUUAAA&AAAUAAAUAGGCUUUCUCUUC	4	0.979786525785295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s889_TRINITY_DN9399_c0_g1_1526_TPlot.pdf
TRINITY_DN9399_c0_g1:1542	si_a318	TRINITY_DN9399_c0_g1	1531	1551	1542	-22.50	-17.80	0.791111111111111	10.5	6-20,1546-1532	1-5,1551-1547[UP5];21-21,1531-1531[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UUAAAGAAAUCAUGGAAGGUG&AUUUAUCCAUGAUUUUUUUAU	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a318_TRINITY_DN9399_c0_g1_1542_TPlot.pdf
TRINITY_DN9399_c0_g1:1638	si_s83	TRINITY_DN9399_c0_g1	1626	1647	1638	-30.90	-22.60	0.731391585760518	4.5	2-16,1646-1632;17-18,1630-1629;20-21,1627-1626	1-1,1647-1647[UP5];x-x,1631-1631[BULt];19-19,1628-1628[SIL]	((.((.(((((((((((((((.&.)))))))))))))))-)).))	GGCGACAGAAGAAGGGAAAGAC&UUCUUUCCUUUCUUCU-UCUUC	3	0.999999992006172	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9399_c0_g1_1638_TPlot.pdf
TRINITY_DN9399_c0_g1:1640	si_s81	TRINITY_DN9399_c0_g1	1628	1649	1640	-28.90	-22.50	0.778546712802768	8	4-18,1646-1632;19-20,1630-1629	1-3,1649-1647[UP5];x-x,1631-1631[BULt];21-21,1628-1628[UP3]	.((.(((((((((((((((...&...)))))))))))))))-)).	CGACAGAAGAAGGGAAAGACCU&UUUUCUUUCCUUUCUUCU-UCU	4	0.999991213468258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9399_c0_g1_1640_TPlot.pdf
TRINITY_DN9399_c0_g1:1645	si_s76	TRINITY_DN9399_c0_g1	1634	1654	1645	-23.60	-17.30	0.733050847457627	15.5	9-21,1646-1634	1-8,1654-1647[UP5]	(((((((((((((........&........)))))))))))))	AAGAAGGGAAAGACCUGAUAG&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9399_c0_g1_1645_TPlot.pdf
TRINITY_DN939_c0_g1:1843	si_s518	TRINITY_DN939_c0_g1	1832	1856	1843	-24.60	-17.70	0.719512195121951	10.5	1-9,1856-1848;10-21,1843-1832	x-x,1847-1844[BULt]	((((((((((((....(((((((((&)))))))))----))))))))))))	GUGGUUUUGGAUUUUAUAAGAAUAU&AUAUUCUUA----AUUCGAAAUCAU	3	0.527171653062842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s518_TRINITY_DN939_c0_g1_1843_TPlot.pdf
TRINITY_DN939_c0_g1:205	si_a75	TRINITY_DN939_c0_g1	194	214	205	-21.30	-14.10	0.661971830985915	9.5	1-3,214-212;5-16,210-199	4-4,211-211[SIL];17-21,198-194[UP3]	.....((((((((((((.(((&))).)))))))))))).....	AGAAAGAUGAAGAACAGCUUG&CAAAUUGUUUUUCAUUAUUAA	3	0.999999999999888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN939_c0_g1_205_TPlot.pdf
TRINITY_DN939_c0_g1:206	si_a74	TRINITY_DN939_c0_g1	195	215	206	-22.20	-15.50	0.698198198198198	8.5	1-4,215-212;6-17,210-199	5-5,211-211[SIL];18-21,198-195[UP3]	....((((((((((((.((((&)))).))))))))))))....	GAAAGAUGAAGAACAGCUUGA&UCAAAUUGUUUUUCAUUAUUA	2	0.998764189281505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN939_c0_g1_206_TPlot.pdf
TRINITY_DN939_c0_g1:207	si_a73	TRINITY_DN939_c0_g1	196	216	207	-21.90	-15.70	0.71689497716895	8.5	2-5,215-212;7-18,210-199	1-1,216-216[UP5];6-6,211-211[SIL];19-21,198-196[UP3]	...((((((((((((.((((.&.)))).))))))))))))...	AAAGAUGAAGAACAGCUUGAU&UUCAAAUUGUUUUUCAUUAUU	2	0.99813651178012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN939_c0_g1_207_TPlot.pdf
TRINITY_DN939_c0_g1:208	si_a72	TRINITY_DN939_c0_g1	197	217	208	-21.90	-15.70	0.71689497716895	9	3-6,215-212;8-19,210-199	1-2,217-216[UP5];7-7,211-211[SIL];20-21,198-197[UP3]	..((((((((((((.((((..&..)))).))))))))))))..	AAGAUGAAGAACAGCUUGAUU&UUUCAAAUUGUUUUUCAUUAU	3	0.999981378565542	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN939_c0_g1_208_TPlot.pdf
TRINITY_DN939_c0_g1:209	si_a71	TRINITY_DN939_c0_g1	198	218	209	-23.30	-15.70	0.67381974248927	10	4-7,215-212;9-20,210-199	1-3,218-216[UP5];8-8,211-211[SIL];21-21,198-198[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	AGAUGAAGAACAGCUUGAUUU&CUUUCAAAUUGUUUUUCAUUA	2	0.999997549215764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN939_c0_g1_209_TPlot.pdf
TRINITY_DN93_c0_g1:226	si_s558	TRINITY_DN93_c0_g1	215	236	226	-28.20	-18.70	0.663120567375887	11	1-5,236-232;8-10,228-226;13-20,223-216	6-7,231-229[AILt];11-12,225-224[SIL];21-21,215-215[UP3]	.((((((((..(((...(((((&)))))-..)))..)))))))).	AUGUCCCGACUAUAGUGAAUUC&GAAUU-AAUAUUUUCGGGACAA	3	0.992695452924521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN93_c0_g1_226_TPlot.pdf
TRINITY_DN93_c0_g1:448	si_s69	TRINITY_DN93_c0_g1	437	457	448	-23.40	-15.80	0.675213675213675	9	4-7,454-451;9-21,449-437	1-3,457-455[UP5];8-8,450-450[SIL]	(((((((((((((.((((...&...)))).)))))))))))))	GAGAGAAGAAAGAGAGAAUAA&AACUUCUAUUUUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN93_c0_g1_448_TPlot.pdf
TRINITY_DN9403_c0_g1:133	si_s240	TRINITY_DN9403_c0_g1	121	142	133	-36.60	-24.70	0.674863387978142	7	1-3,142-140;5-9,138-134;11-14,132-129;16-21,126-121	4-4,139-139[SIL];10-10,133-133[SIL];15-15,128-127[AILt]	((((((..((((.(((((.(((&))).))))).))))-.))))))	CGGGAAUCUGCCCAUUGGAUCC&GGAAUCAAUAGGCA-UUUCCCG	4	0.571016456194753	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s240_TRINITY_DN9403_c0_g1_133_TPlot.pdf
TRINITY_DN9404_c0_g1:1236	si_a415	TRINITY_DN9404_c0_g1	1224	1245	1236	-18.10	-12.00	0.662983425414365	7	2-10,1244-1236;12-21,1233-1224	1-1,1245-1245[UP5];11-11,1235-1234[AILt]	((((((((((..(((((((((.&.)))))))))-.))))))))))	UUAUGUUUAUGAUAAAUGUAAC&UUUAUAUUUA-AAUAAAUAUAG	4	0.999343138557244	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN9404_c0_g1_1236_TPlot.pdf
TRINITY_DN9406_c0_g1:88	si_a364	TRINITY_DN9406_c0_g1	75	97	88	-27.70	-19.10	0.689530685920578	8	4-15,94-83;16-21,80-75	1-3,97-95[UP5];x-x,82-81[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	CAUUUUUCUGAUUCGAUCAAUGA&AUUUUGAUCGGAUCA--AAAAUG	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a364_TRINITY_DN9406_c0_g1_88_TPlot.pdf
TRINITY_DN9409_c0_g1:514	si_a302	TRINITY_DN9409_c0_g1	496	523	514	-28.20	-18.60	0.659574468085106	18	2-10,522-514;11-18,506-499	1-1,523-523[UP5];x-x,513-507[BULt];19-21,498-496[UP3]	...((((((((.......(((((((((.&.)))))))))-------))))))))...	CGCAUCCAAGCCACUAAUGAAUCUUUUA&AAAAAGAUUC-------GCUUGGAUUUA	2	0.999239418949398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN9409_c0_g1_514_TPlot.pdf
TRINITY_DN9415_c0_g1:2013	si_a128	TRINITY_DN9415_c0_g1	2002	2022	2013	-23.20	-15.20	0.655172413793103	7.5	3-18,2020-2005	1-2,2022-2021[UP5];19-21,2004-2002[UP3]	...((((((((((((((((..&..))))))))))))))))...	CAGAAUUAUUAUUGUUAUAUU&UUUAUAGCAAUAGUAAUUAAU	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN9415_c0_g1_2013_TPlot.pdf
TRINITY_DN9415_c0_g1:2019	si_s422	TRINITY_DN9415_c0_g1	2008	2035	2019	-21.30	-14.30	0.671361502347418	16	1-7,2035-2029;8-20,2021-2009	x-x,2028-2022[BULt];21-21,2008-2008[UP3]	.(((((((((((((.......(((((((&)))))))-------))))))))))))).	UAUUAUUGUUAUAUUUCUGUGAGAAUGU&AUAUUCU-------AUAUAACAAUAAUU	2	0.956562384899604	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN9415_c0_g1_2019_TPlot.pdf
TRINITY_DN9415_c0_g1:2082	si_s440	TRINITY_DN9415_c0_g1	2071	2088	2082	-21.60	-14.40	0.666666666666667	7	1-7,2088-2082;11-21,2081-2071	8-10,x-x[BULq]	(((((((((((---(((((((&)))))))...)))))))))))	UUGUUAUAUAU---GUGUAAU&AUUACAUAUUAUAUAUAACAA	2	0.981596488226653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN9415_c0_g1_2082_TPlot.pdf
TRINITY_DN9415_c0_g1:2111	si_s356	TRINITY_DN9415_c0_g1	2101	2120	2111	-28.90	-19.40	0.671280276816609	4.5	1-12,2120-2109;15-21,2107-2101	13-14,2108-2108[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	UCGGUUUU-UCUGUUUUUUUA&UAAAGAAAUAGAUUGAACCGA	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s356_TRINITY_DN9415_c0_g1_2111_TPlot.pdf
TRINITY_DN9415_c0_g1:2112	si_s355	TRINITY_DN9415_c0_g1	2102	2121	2112	-28.10	-18.30	0.651245551601424	4.5	1-13,2121-2109;16-21,2107-2102	14-15,2108-2108[AILq]	((((((.-(((((((((((((&)))))))))))))..))))))	CGGUUUU-UCUGUUUUUUUAU&AUAAAGAAAUAGAUUGAACCG	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s355_TRINITY_DN9415_c0_g1_2112_TPlot.pdf
TRINITY_DN9415_c0_g1:2114	si_s117	TRINITY_DN9415_c0_g1	2103	2123	2114	-24.70	-16.30	0.659919028340081	5	1-19,2123-2105	20-21,2104-2103[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	GGUUUUUCUGUUUUUUUAUUU&AAAUAGAAAAAUAGAAGAGUU	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s117_TRINITY_DN9415_c0_g1_2114_TPlot.pdf
TRINITY_DN9415_c0_g1:2115	si_s116	TRINITY_DN9415_c0_g1	2104	2124	2115	-24.70	-16.50	0.668016194331984	4.5	2-20,2123-2105	1-1,2124-2124[UP5];21-21,2104-2104[UP3]	.(((((((((((((((((((.&.))))))))))))))))))).	GUUUUUCUGUUUUUUUAUUUA&AAAAUAGAAAAAUAGAAGAGU	2	0.827076674066767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s116_TRINITY_DN9415_c0_g1_2115_TPlot.pdf
TRINITY_DN9415_c0_g1:463	si_s72	TRINITY_DN9415_c0_g1	452	471	463	-24.10	-17.30	0.717842323651452	5.5	1-3,471-469;5-10,468-463;12-21,461-452	4-4,x-x[BULq];11-11,462-462[SIL]	((((((((((.((((((-(((&))).)))))).))))))))))	GAGGAAAGAACGAAAAU-GAA&UUCUAUUUUUUUUCUUUCCUU	4	0.99999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9415_c0_g1_463_TPlot.pdf
TRINITY_DN9416_c0_g1:343	si_a479	TRINITY_DN9416_c0_g1	332	352	343	-23.00	-15.40	0.669565217391304	10	5-18,348-335	1-4,352-349[UP5];19-21,334-332[UP3]	...((((((((((((((....&....))))))))))))))...	CCAAUUCUAUAUAACAAAAUC&AUUAUUGUUAUAUAGAAUAUG	3	0.994926111215648	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a479_TRINITY_DN9416_c0_g1_343_TPlot.pdf
TRINITY_DN9416_c0_g1:344	si_a478	TRINITY_DN9416_c0_g1	333	353	344	-21.30	-15.40	0.723004694835681	11	6-19,348-335	1-5,353-349[UP5];20-21,334-333[UP3]	..((((((((((((((.....&.....))))))))))))))..	CAAUUCUAUAUAACAAAAUCU&AAUUAUUGUUAUAUAGAAUAU	3	0.978642100366405	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN9416_c0_g1_344_TPlot.pdf
TRINITY_DN9416_c0_g1:345	si_a477	TRINITY_DN9416_c0_g1	334	354	345	-21.50	-15.40	0.716279069767442	12	7-20,348-335	1-6,354-349[UP5];21-21,334-334[UP3]	.((((((((((((((......&......)))))))))))))).	AAUUCUAUAUAACAAAAUCUU&UAAUUAUUGUUAUAUAGAAUA	3	0.960797618037098	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN9416_c0_g1_345_TPlot.pdf
TRINITY_DN9416_c0_g1:346	si_a476	TRINITY_DN9416_c0_g1	335	355	346	-22.90	-15.10	0.65938864628821	13	8-21,348-335	1-7,355-349[UP5]	((((((((((((((.......&.......))))))))))))))	AUUCUAUAUAACAAAAUCUUA&GUAAUUAUUGUUAUAUAGAAU	3	0.999627437524064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN9416_c0_g1_346_TPlot.pdf
TRINITY_DN9418_c0_g1:223	si_a75	TRINITY_DN9418_c0_g1	212	232	223	-21.30	-14.20	0.666666666666667	11	5-18,228-215	1-4,232-229[UP5];19-21,214-212[UP3]	...((((((((((((((....&....))))))))))))))...	AAUGUAGUGAAAAACAAAAAG&CAAAUUGUUUUUCAUUAUUAA	4	0.999999999998001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN9418_c0_g1_223_TPlot.pdf
TRINITY_DN941_c0_g1:1015	si_s9	TRINITY_DN941_c0_g1	1004	1024	1015	-22.90	-17.00	0.74235807860262	6	2-15,1023-1010;17-20,1008-1005	1-1,1024-1024[UP5];16-16,1009-1009[SIL];21-21,1004-1004[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	UGAUAAGGUGAUAAUAAGUGG&UUACUUAUUAUUACUAUAUUG	3	0.737129780346414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN941_c0_g1_1015_TPlot.pdf
TRINITY_DN941_c0_g1:1016	si_s8	TRINITY_DN941_c0_g1	1005	1025	1016	-21.30	-16.70	0.784037558685446	6.5	3-16,1023-1010;18-21,1008-1005	1-2,1025-1024[UP5];17-17,1009-1009[SIL]	((((.((((((((((((((..&..)))))))))))))).))))	GAUAAGGUGAUAAUAAGUGGA&AUUACUUAUUAUUACUAUAUU	4	0.665140764692453	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s8_TRINITY_DN941_c0_g1_1016_TPlot.pdf
TRINITY_DN941_c0_g1:1019	si_s5	TRINITY_DN941_c0_g1	1008	1028	1019	-21.70	-15.40	0.709677419354839	13	6-19,1023-1010	1-5,1028-1024[UP5];20-21,1009-1008[UP3]	..((((((((((((((.....&.....))))))))))))))..	AAGGUGAUAAUAAGUGGAUCU&UAUAUUACUUAUUAUUACUAU	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN941_c0_g1_1019_TPlot.pdf
TRINITY_DN941_c0_g1:1022	si_s2	TRINITY_DN941_c0_g1	1011	1031	1022	-20.50	-13.80	0.673170731707317	16.5	9-21,1023-1011	1-8,1031-1024[UP5]	(((((((((((((........&........)))))))))))))	GUGAUAAUAAGUGGAUCUAGC&UUUUAUAUUACUUAUUAUUAC	3	0.99980898397417	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s2_TRINITY_DN941_c0_g1_1022_TPlot.pdf
TRINITY_DN941_c0_g1:1359	si_s888	TRINITY_DN941_c0_g1	1347	1368	1359	-26.80	-18.30	0.682835820895522	12	5-14,1364-1355;15-20,1353-1348	1-4,1368-1365[UP5];x-x,1354-1354[BULt];21-21,1347-1347[UP3]	.((((((.((((((((((....&....))))))))))-)))))).	CGGGGAAUAGCCUGUUUGCAAU&AAAAUAAAUAGGCU-UUCUCUU	3	0.996100152895399	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s888_TRINITY_DN941_c0_g1_1359_TPlot.pdf
TRINITY_DN941_c0_g1:1424	si_s422	TRINITY_DN941_c0_g1	1414	1433	1424	-21.30	-14.70	0.690140845070423	5.5	1-11,1433-1423;14-15,1420-1419;17-21,1418-1414	12-13,1422-1421[SIL];16-16,x-x[BULq]	(((((-((..(((((((((((&)))))))))))..)).)))))	GAUUA-UGGGAUAUAGAAUGU&AUAUUCUAUAUAACAAUAAUU	2	0.912790775771963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s422_TRINITY_DN941_c0_g1_1424_TPlot.pdf
TRINITY_DN941_c0_g1:1425	si_s421	TRINITY_DN941_c0_g1	1415	1434	1425	-23.00	-16.80	0.730434782608696	4	1-12,1434-1423;15-16,1420-1419;18-21,1418-1415	13-14,1422-1421[SIL];17-17,x-x[BULq]	((((-((..((((((((((((&))))))))))))..)).))))	AUUA-UGGGAUAUAGAAUGUG&CAUAUUCUAUAUAACAAUAAU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN941_c0_g1_1425_TPlot.pdf
TRINITY_DN941_c0_g1:1429	si_s417	TRINITY_DN941_c0_g1	1418	1438	1429	-27.40	-17.90	0.653284671532847	7	2-3,1437-1436;5-16,1434-1423;19-20,1420-1419	1-1,1438-1438[UP5];4-4,1435-1435[SIL];17-18,1422-1421[SIL];21-21,1418-1418[UP3]	.((..((((((((((((.((.&.)).))))))))))))..)).	AUGGGAUAUAGAAUGUGGCGC&ACGACAUAUUCUAUAUAACAA	3	0.929486126332816	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s417_TRINITY_DN941_c0_g1_1429_TPlot.pdf
TRINITY_DN941_c0_g1:1465	si_s803	TRINITY_DN941_c0_g1	1454	1474	1465	-26.00	-17.00	0.653846153846154	13	7-13,1468-1462;15-21,1460-1454	1-6,1474-1469[UP5];14-14,1461-1461[SIL]	(((((((.(((((((......&......))))))).)))))))	GGAAGGUCACGAAGAAUUAGU&AUUUUAUCUUCGUUACCUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN941_c0_g1_1465_TPlot.pdf
TRINITY_DN941_c0_g1:384	si_a544	TRINITY_DN941_c0_g1	373	393	384	-28.90	-19.20	0.664359861591695	9.5	2-7,392-387;10-19,384-375	1-1,393-393[UP5];8-9,386-385[SIL];20-21,374-373[UP3]	..((((((((((..((((((.&.))))))..))))))))))..	UCGAGAAAUGGAGCGAAUCGG&UCGGUUCAAUCUAUUUCUUUA	2	0.981132633276911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a544_TRINITY_DN941_c0_g1_384_TPlot.pdf
TRINITY_DN941_c0_g1:766	si_s563	TRINITY_DN941_c0_g1	754	775	766	-30.80	-20.70	0.672077922077922	7.5	3-8,773-768;10-12,766-764;13-21,762-754	1-2,775-774[UP5];9-9,767-767[SIL];x-x,763-763[BULt]	(((((((((.(((.((((((..&..)))))).)))-)))))))))	GUUCCUUGUACCCCAAAAUAAU&AAUAUUUUCGGG-ACAAGGAAU	4	0.947757416523669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s563_TRINITY_DN941_c0_g1_766_TPlot.pdf
TRINITY_DN941_c0_g1:851	si_a761	TRINITY_DN941_c0_g1	840	862	851	-30.10	-20.18	0.670431893687708	12	1-6,862-857;9-20,852-841	7-8,856-853[AILt];21-21,840-840[UP3]	.((((((((((((....((((((&))))))--..)))))))))))).	UGUCGAUCAGAGAACAGCAAAGG&CCUUUG--GGUUUUUGAUUGAUU	4	0.999999961446961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN941_c0_g1_851_TPlot.pdf
TRINITY_DN941_c0_g1:852	si_a760	TRINITY_DN941_c0_g1	841	863	852	-31.10	-21.78	0.70032154340836	10.5	1-7,863-857;10-21,852-841	8-9,856-853[AILt]	((((((((((((....(((((((&)))))))--..))))))))))))	GUCGAUCAGAGAACAGCAAAGGA&UCCUUUG--GGUUUUUGAUUGAU	3	0.998118332502937	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a760_TRINITY_DN941_c0_g1_852_TPlot.pdf
TRINITY_DN941_c0_g1:853	si_a759	TRINITY_DN941_c0_g1	842	864	853	-32.60	-22.98	0.704907975460123	10	1-8,864-857;11-21,852-842	9-10,856-853[AILt]	(((((((((((....((((((((&))))))))--..)))))))))))	UCGAUCAGAGAACAGCAAAGGAG&CUCCUUUG--GGUUUUUGAUUGA	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN941_c0_g1_853_TPlot.pdf
TRINITY_DN9427_c0_g1:1000	si_a218	TRINITY_DN9427_c0_g1	989	1009	1000	-26.60	-18.70	0.703007518796992	14.5	8-21,1002-989	1-7,1009-1003[UP5]	((((((((((((((.......&.......))))))))))))))	UGGAGGCAUGAGUUGGGAAAC&CUAAUUAAACUCAUGUUUCUA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a218_TRINITY_DN9427_c0_g1_1000_TPlot.pdf
TRINITY_DN9427_c0_g1:991	si_a227	TRINITY_DN9427_c0_g1	979	1000	991	-26.80	-19.40	0.723880597014925	6.5	1-12,1000-989;13-15,987-985;17-21,983-979	x-x,988-988[BULt];16-16,984-984[SIL]	(((((.(((.((((((((((((&))))))))))))-))).)))))	AAUUGUUUGUUGGAGGCAUGAG&CUCAUGUUUCUA-UAAUCAAUU	3	0.545933030250332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a227_TRINITY_DN9427_c0_g1_991_TPlot.pdf
TRINITY_DN9427_c0_g1:994	si_a224	TRINITY_DN9427_c0_g1	982	1003	994	-27.40	-19.50	0.711678832116788	6	2-15,1002-989;16-18,987-985;20-21,983-982	1-1,1003-1003[UP5];x-x,988-988[BULt];19-19,984-984[SIL]	((.(((.((((((((((((((.&.))))))))))))))-))).))	UGUUUGUUGGAGGCAUGAGUUG&AAACUCAUGUUUCUA-UAAUCA	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN9427_c0_g1_994_TPlot.pdf
TRINITY_DN9427_c0_g1:995	si_a223	TRINITY_DN9427_c0_g1	984	1004	995	-27.10	-18.80	0.693726937269373	10.5	3-16,1002-989	1-2,1004-1003[UP5];17-21,988-984[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUGUUGGAGGCAUGAGUUGG&UAAACUCAUGUUUCUAUAAUC	3	0.757576788954141	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN9427_c0_g1_995_TPlot.pdf
TRINITY_DN9427_c0_g1:996	si_a222	TRINITY_DN9427_c0_g1	985	1005	996	-25.20	-18.80	0.746031746031746	11	4-17,1002-989	1-3,1005-1003[UP5];18-21,988-985[UP3]	....((((((((((((((...&...))))))))))))))....	UUGUUGGAGGCAUGAGUUGGG&UUAAACUCAUGUUUCUAUAAU	3	0.60592640933231	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN9427_c0_g1_996_TPlot.pdf
TRINITY_DN9427_c0_g1:997	si_a221	TRINITY_DN9427_c0_g1	986	1006	997	-25.20	-18.80	0.746031746031746	11.5	5-18,1002-989	1-4,1006-1003[UP5];19-21,988-986[UP3]	...((((((((((((((....&....))))))))))))))...	UGUUGGAGGCAUGAGUUGGGA&AUUAAACUCAUGUUUCUAUAA	2	0.399679801618671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN9427_c0_g1_997_TPlot.pdf
TRINITY_DN9427_c0_g1:998	si_a220	TRINITY_DN9427_c0_g1	987	1007	998	-25.10	-18.80	0.749003984063745	12.5	6-19,1002-989	1-5,1007-1003[UP5];20-21,988-987[UP3]	..((((((((((((((.....&.....))))))))))))))..	GUUGGAGGCAUGAGUUGGGAA&AAUUAAACUCAUGUUUCUAUA	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a220_TRINITY_DN9427_c0_g1_998_TPlot.pdf
TRINITY_DN9427_c0_g1:999	si_a219	TRINITY_DN9427_c0_g1	988	1008	999	-25.10	-18.80	0.749003984063745	13.5	7-20,1002-989	1-6,1008-1003[UP5];21-21,988-988[UP3]	.((((((((((((((......&......)))))))))))))).	UUGGAGGCAUGAGUUGGGAAA&UAAUUAAACUCAUGUUUCUAU	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a219_TRINITY_DN9427_c0_g1_999_TPlot.pdf
TRINITY_DN942_c0_g1:1260	si_s344	TRINITY_DN942_c0_g1	1249	1269	1260	-33.40	-22.80	0.682634730538922	7	2-5,1268-1265;7-14,1263-1256;16-19,1254-1251	1-1,1269-1269[UP5];6-6,1264-1264[SIL];15-15,1255-1255[SIL];20-21,1250-1249[UP3]	..((((.((((((((.((((.&.)))).)))))))).))))..	AAUUCUGUAUCUCCUGGUGAU&UUCACGGGGAGAUAAAGAAAU	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN942_c0_g1_1260_TPlot.pdf
TRINITY_DN942_c0_g1:1311	si_a768	TRINITY_DN942_c0_g1	1299	1320	1311	-28.40	-21.50	0.757042253521127	7	4-19,1317-1302;20-21,1300-1299	1-3,1320-1318[UP5];x-x,1301-1301[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	AGAAGUUGAAUCAGUCAAACGA&GUUUUUGAUUGAUUCAACU-CU	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN942_c0_g1_1311_TPlot.pdf
TRINITY_DN942_c0_g1:1324	si_s79	TRINITY_DN942_c0_g1	1313	1333	1324	-26.20	-17.20	0.656488549618321	7.5	1-15,1333-1319	16-21,1318-1313[UP3]	......(((((((((((((((&)))))))))))))))......	UCAAACGAAGGAAAGAAGAAA&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN942_c0_g1_1324_TPlot.pdf
TRINITY_DN942_c0_g1:1328	si_s75	TRINITY_DN942_c0_g1	1317	1337	1328	-24.00	-18.80	0.783333333333333	6.5	3-19,1335-1319	1-2,1337-1336[UP5];20-21,1318-1317[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	ACGAAGGAAAGAAGAAAAACU&UAUUUUUUUUCUUUCCUUUCU	2	0.999591792656653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN942_c0_g1_1328_TPlot.pdf
TRINITY_DN942_c0_g1:1329	si_s74	TRINITY_DN942_c0_g1	1318	1339	1329	-25.00	-20.80	0.832	4.5	1-3,1339-1337;4-20,1335-1319	x-x,1336-1336[BULt];21-21,1318-1318[UP3]	.(((((((((((((((((.(((&)))-))))))))))))))))).	CGAAGGAAAGAAGAAAAACUAG&CUA-UUUUUUUUCUUUCCUUUC	2	0.82491099539241	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN942_c0_g1_1329_TPlot.pdf
TRINITY_DN942_c0_g1:1330	si_s73	TRINITY_DN942_c0_g1	1319	1340	1330	-24.00	-21.00	0.875	4	1-4,1340-1337;5-21,1335-1319	x-x,1336-1336[BULt]	(((((((((((((((((.((((&))))-)))))))))))))))))	GAAGGAAAGAAGAAAAACUAGG&UCUA-UUUUUUUUCUUUCCUUU	2	0.514160342473346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN942_c0_g1_1330_TPlot.pdf
TRINITY_DN942_c0_g1:1331	si_s72	TRINITY_DN942_c0_g1	1320	1341	1331	-24.10	-19.80	0.821576763485477	5	2-5,1340-1337;6-21,1335-1320	1-1,1341-1341[UP5];x-x,1336-1336[BULt]	((((((((((((((((.((((.&.))))-))))))))))))))))	AAGGAAAGAAGAAAAACUAGGU&UUCUA-UUUUUUUUCUUUCCUU	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN942_c0_g1_1331_TPlot.pdf
TRINITY_DN942_c0_g1:1332	si_s71	TRINITY_DN942_c0_g1	1321	1342	1332	-25.70	-18.90	0.735408560311284	7	3-6,1340-1337;7-21,1335-1321	1-2,1342-1341[UP5];x-x,1336-1336[BULt]	(((((((((((((((.((((..&..))))-)))))))))))))))	AGGAAAGAAGAAAAACUAGGUC&CUUCUA-UUUUUUUUCUUUCCU	3	0.999999989808071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN942_c0_g1_1332_TPlot.pdf
TRINITY_DN9431_c0_g1:849	si_a870	TRINITY_DN9431_c0_g1	838	858	849	-24.80	-16.60	0.669354838709677	11.5	6-14,853-845;17-21,842-838	1-5,858-854[UP5];15-16,844-843[SIL]	(((((..(((((((((.....&.....)))))))))..)))))	GUUGCUUCUAAAUCUUAAAAU&UAUUAAAGAUUUAGUUGCAAU	2	0.971193447989501	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN9431_c0_g1_849_TPlot.pdf
TRINITY_DN9433_c0_g1:105	si_a358	TRINITY_DN9433_c0_g1	94	118	105	-29.10	-19.00	0.652920962199313	16	4-6,115-113;7-21,108-94	1-3,118-116[UP5];x-x,112-109[BULt]	(((((((((((((((....(((...&...)))----)))))))))))))))	UGGUCUGAUCAAGAUCAACGGAUGC&AAUUCU----AUUUUGAUCGGAUCA	4	0.999838615020386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN9433_c0_g1_105_TPlot.pdf
TRINITY_DN9434_c0_g2:649	si_a141	TRINITY_DN9434_c0_g2	638	659	649	-23.80	-17.30	0.726890756302521	11	4-9,656-651;10-21,649-638	1-3,659-657[UP5];x-x,650-650[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	UGAGGCAGCAGCUGGUUAAACU&UAAUUAAUC-GUUGUUGUUUUA	3	0.995771223140807	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN9434_c0_g2_649_TPlot.pdf
TRINITY_DN9435_c0_g1:518	si_a79	TRINITY_DN9435_c0_g1	507	527	518	-22.20	-14.70	0.662162162162162	10.5	2-15,526-513	1-1,527-527[UP5];16-21,512-507[UP3]	......((((((((((((((.&.))))))))))))))......	CAUAAGGAUGAUGAAGGACAU&UUGUUUUUCAUUAUUAAGAAA	2	0.999968955476022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a79_TRINITY_DN9435_c0_g1_518_TPlot.pdf
TRINITY_DN9435_c0_g1:686	si_a601	TRINITY_DN9435_c0_g1	675	695	686	-30.00	-20.30	0.676666666666667	8	1-13,695-683;16-18,680-678	14-15,682-681[SIL];19-21,677-675[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	AAAUGGCUUUGCGGAGGUUCU&AGAAUUUUCGCAAUUCCAAUC	4	0.856350898561854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a601_TRINITY_DN9435_c0_g1_686_TPlot.pdf
TRINITY_DN9437_c0_g2:644	si_s66	TRINITY_DN9437_c0_g2	633	653	644	-26.30	-18.70	0.711026615969582	6	1-10,653-644;12-15,642-639;18-21,636-633	11-11,643-643[SIL];16-17,638-637[SIL]	((((..((((.((((((((((&)))))))))).))))..))))	AGAAUUGGAAGGGAAGUUGCU&AGCAACUUCUAUUUUUUUUCU	4	0.998117730680107	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN9437_c0_g2_644_TPlot.pdf
TRINITY_DN9437_c0_g2:645	si_s65	TRINITY_DN9437_c0_g2	634	654	645	-26.00	-17.50	0.673076923076923	7	2-11,653-644;13-16,642-639;19-21,636-634	1-1,654-654[UP5];12-12,643-643[SIL];17-18,638-637[SIL]	(((..((((.((((((((((.&.)))))))))).))))..)))	GAAUUGGAAGGGAAGUUGCUC&UAGCAACUUCUAUUUUUUUUC	2	0.999376752132941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN9437_c0_g2_645_TPlot.pdf
TRINITY_DN9445_c0_g1:145	si_a744	TRINITY_DN9445_c0_g1	126	155	145	-44.40	-30.90	0.695945945945946	23	1-4,155-152;5-11,150-144;12-19,135-128	x-x,151-151[BULt];x-x,143-136[BULt];20-21,127-126[UP3]	..((((((((........(((((((.((((&))))-)))))))--------))))))))..	GUGGAGGUUUCGGCGGCGGUGGCCGUGGGG&CCCC-UGGCCAU--------GAACCUCCUU	4	0.524374702593233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a744_TRINITY_DN9445_c0_g1_145_TPlot.pdf
TRINITY_DN9445_c0_g1:621	si_a369	TRINITY_DN9445_c0_g1	610	633	621	-30.00	-20.62	0.687333333333333	12.5	1-9,633-625;12-19,619-612	10-11,624-620[AILt];20-21,611-610[UP3]	..((((((((.....(((((((((&)))))))))---..))))))))..	UUGAUCAUUUCAUUGGAUCCGAUC&GAUCGGAUC---AAAAAUGAUUUC	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a369_TRINITY_DN9445_c0_g1_621_TPlot.pdf
TRINITY_DN9445_c0_g1:630	si_a363	TRINITY_DN9445_c0_g1	619	639	630	-26.40	-17.30	0.65530303030303	10.5	1-4,639-636;7-15,633-625	5-6,635-634[SIL];16-21,624-619[UP3]	......(((((((((..((((&))))..)))))))))......	UCAUUGGAUCCGAUCUUAAUG&UAUUUUGAUCGGAUCAAAAAU	3	0.999751478956715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a363_TRINITY_DN9445_c0_g1_630_TPlot.pdf
TRINITY_DN9445_c0_g1:926	si_s463	TRINITY_DN9445_c0_g1	913	936	926	-31.90	-21.30	0.667711598746082	7.5	1-9,936-928;10-14,926-922;16-21,918-913	x-x,927-927[BULt];15-15,921-919[AILt]	((((((...(((((.(((((((((&)))))))))-)))))--.))))))	GUCCGUAGAGGAUACUGGGGUAAU&AUUAUCUCA-UAUCC--AACGGAU	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s463_TRINITY_DN9445_c0_g1_926_TPlot.pdf
TRINITY_DN9447_c1_g1:1162	si_a128	TRINITY_DN9447_c1_g1	1151	1171	1162	-23.20	-15.70	0.676724137931034	11	5-19,1167-1153	1-4,1171-1168[UP5];20-21,1152-1151[UP3]	..(((((((((((((((....&....)))))))))))))))..	ACUGAUUAUUAUUGCUGAAUA&UUUAUAGCAAUAGUAAUUAAU	2	0.952014688014544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a128_TRINITY_DN9447_c1_g1_1162_TPlot.pdf
TRINITY_DN9448_c0_g1:493	si_a73	TRINITY_DN9448_c0_g1	482	502	493	-21.90	-14.30	0.65296803652968	10	3-15,500-488	1-2,502-501[UP5];16-21,487-482[UP3]	......(((((((((((((..&..)))))))))))))......	CAAAAAGAAAAGCAAUUUGUA&UUCAAAUUGUUUUUCAUUAUU	4	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a73_TRINITY_DN9448_c0_g1_493_TPlot.pdf
TRINITY_DN9449_c0_g1:4182	si_a110	TRINITY_DN9449_c0_g1	4171	4191	4182	-27.80	-18.20	0.654676258992806	17.5	10-21,4182-4171	1-9,4191-4183[UP5]	((((((((((((.........&.........))))))))))))	GAAACAAGCUCGGUGAGAAAC&GAUAAAAUACGAGCUUGUUUU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN9449_c0_g1_4182_TPlot.pdf
TRINITY_DN9449_c0_g1:4929	si_a788	TRINITY_DN9449_c0_g1	4917	4941	4929	-24.80	-17.40	0.701612903225806	10	1-7,4941-4935;8-15,4931-4924;16-21,4922-4917	x-x,4934-4932[BULt];x-x,4923-4923[BULt]	((((((.((((((((...(((((((&)))))))---))))))))-))))))	UUGGAACAAUGGAGAGAGGAUAGAA&UUCUAUU---UUUCUAUU-UUCCAA	4	0.999998763609859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN9449_c0_g1_4929_TPlot.pdf
TRINITY_DN9449_c0_g1:4939	si_s76	TRINITY_DN9449_c0_g1	4928	4948	4939	-23.60	-19.00	0.805084745762712	10	4-11,4945-4938;13-21,4936-4928	1-3,4948-4946[UP5];12-12,4937-4937[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	GAGAGAGGAUAGAAAGAGUGG&AUUUUUUUUCUUUCCUUUCUU	3	0.999999269995414	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9449_c0_g1_4939_TPlot.pdf
TRINITY_DN9449_c0_g1:4941	si_s74	TRINITY_DN9449_c0_g1	4930	4948	4941	-25.00	-17.50	0.7	8.5	1-6,4948-4943;9-13,4942-4938;15-21,4936-4930	7-8,x-x[BULq];14-14,4937-4937[SIL]	(((((((.(((((--((((((&))))))..))))).)))))))	GAGAGGAUAGAAA--GAGUGG&CUAUUUUUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9449_c0_g1_4941_TPlot.pdf
TRINITY_DN9449_c0_g1:5482	si_a135	TRINITY_DN9449_c0_g1	5471	5489	5482	-25.70	-17.38	0.676264591439689	9	1-6,5489-5484;11-21,5481-5471	7-10,5483-5482[AILq]	(((((((((((..--((((((&))))))....)))))))))))	AACAACGAUUGCU--CUAUUG&CAAUAGUAAUUAAUCGUUGUU	3	0.880639315924467	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a135_TRINITY_DN9449_c0_g1_5482_TPlot.pdf
TRINITY_DN9449_c0_g1:7119	si_s515	TRINITY_DN9449_c0_g1	7108	7128	7119	-24.80	-17.00	0.685483870967742	8.5	3-9,7126-7120;11-21,7118-7108	1-2,7128-7127[UP5];10-10,7119-7119[SIL]	(((((((((((.(((((((..&..))))))).)))))))))))	GUUUCGAAUUGUGGAUGUAUC&UCUAUAUUCUUAAUUCGAAAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s515_TRINITY_DN9449_c0_g1_7119_TPlot.pdf
TRINITY_DN9449_c0_g1:7290	si_s820	TRINITY_DN9449_c0_g1	7279	7299	7290	-22.10	-15.10	0.683257918552036	9	1-15,7299-7285	16-21,7284-7279[UP3]	......(((((((((((((((&)))))))))))))))......	UGCAACUCAUUAUUGAGGGAA&UUUUCUUAAUAAUGAAAAACA	4	0.870437714445887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN9449_c0_g1_7290_TPlot.pdf
TRINITY_DN9449_c1_g1:2759	si_a784	TRINITY_DN9449_c1_g1	2748	2768	2759	-24.70	-19.50	0.789473684210526	8.5	2-17,2767-2752	1-1,2768-2768[UP5];18-21,2751-2748[UP3]	....((((((((((((((((.&.))))))))))))))))....	GUUUUAGGAAGAUGGAAGGGA&ACUCUUCUAUUUUUCUAUUUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9449_c1_g1_2759_TPlot.pdf
TRINITY_DN944_c0_g1:1382	si_a123	TRINITY_DN944_c0_g1	1371	1395	1382	-26.60	-17.46	0.656390977443609	15.5	1-7,1395-1389;10-21,1382-1371	8-9,1388-1383[AILt]	((((((((((((......(((((((&)))))))----..))))))))))))	UUACUGUUGUUAAAUAGUGAACAGG&CUUGUUU----UAUAGCAAUAGUAA	4	0.99982472395616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN944_c0_g1_1382_TPlot.pdf
TRINITY_DN944_c0_g2:920	si_a774	TRINITY_DN944_c0_g2	909	930	920	-29.20	-21.20	0.726027397260274	8	1-4,930-927;6-19,924-911	5-5,926-925[AILt];20-21,910-909[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	UCUGGAGGAGUUGGAUAAAAUC&GAUU-GAUUCAACUCUUCUAUU	4	0.697978424988413	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a774_TRINITY_DN944_c0_g2_920_TPlot.pdf
TRINITY_DN9450_c0_g1:2008	si_a712	TRINITY_DN9450_c0_g1	1989	2017	2008	-28.20	-18.60	0.659574468085106	19.5	2-11,2016-2007;12-21,1998-1989	1-1,2017-2017[UP5];x-x,2006-1999[BULt]	((((((((((........((((((((((.&.))))))))))--------))))))))))	GAGUAAUGAUUCCAUCAAUAUUUUGGGGG&AUUCCAAAAUA--------AUCGUUACUC	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN9450_c0_g1_2008_TPlot.pdf
TRINITY_DN9450_c0_g1:3263	si_a415	TRINITY_DN9450_c0_g1	3252	3272	3263	-18.10	-14.20	0.784530386740331	5.5	2-7,3271-3266;10-21,3263-3252	1-1,3272-3272[UP5];8-9,3265-3264[SIL]	((((((((((((..((((((.&.))))))..))))))))))))	CUGUAUUUAUUUUUAUAUAAU&UUUAUAUUUAAAUAAAUAUAG	2	0.353133413602492	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN9450_c0_g1_3263_TPlot.pdf
TRINITY_DN9451_c0_g1:472	si_a638	TRINITY_DN9451_c0_g1	463	481	472	-24.40	-16.10	0.659836065573771	5	1-12,481-470;14-14,469-469;16-21,468-463	13-13,x-x[BULq];15-15,x-x[BULq]	((((((-(-((((((((((((&)))))))))))).).))))))	UGUGUU-C-CAAAGAAGUCGA&UCGAUUUUUUUGAGUAAUAUA	3	0.999999918000445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN9451_c0_g1_472_TPlot.pdf
TRINITY_DN9453_c0_g1:1148	si_a548	TRINITY_DN9453_c0_g1	1135	1157	1148	-27.20	-18.60	0.683823529411765	6	1-8,1157-1150;10-18,1148-1140;19-21,1137-1135	9-9,1149-1149[SIL];x-x,1139-1138[BULt]	(((..(((((((((.((((((((&)))))))).)))))))))--)))	GAGUCGUAAGGAAGAAGAUUGAA&UUCAAUCUAUUUCUUUAU--CUC	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN9453_c0_g1_1148_TPlot.pdf
TRINITY_DN9453_c0_g1:919	si_a763	TRINITY_DN9453_c0_g1	908	929	919	-28.80	-19.50	0.677083333333333	8.5	2-7,928-923;8-21,921-908	1-1,929-929[UP5];x-x,922-922[BULt]	((((((((((((((.((((((.&.))))))-))))))))))))))	UGAAUCGAUUAAGGUACCUGAU&UUUGGGU-UUUUGAUUGAUUCA	4	0.999999737099848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN9453_c0_g1_919_TPlot.pdf
TRINITY_DN9454_c0_g1:895	si_a338	TRINITY_DN9454_c0_g1	884	904	895	-31.10	-22.10	0.710610932475884	9.5	1-12,904-893	13-21,892-884[UP3]	.........((((((((((((&)))))))))))).........	UUCUAAGUACGGGACAAGGAG&UUCCUUGUCCCGAAAAUAUUA	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a338_TRINITY_DN9454_c0_g1_895_TPlot.pdf
TRINITY_DN9454_c0_g1:898	si_a335	TRINITY_DN9454_c0_g1	887	907	898	-31.10	-23.40	0.752411575562701	10	3-15,905-893	1-2,907-906[UP5];16-21,892-887[UP3]	......(((((((((((((..&..)))))))))))))......	UAAGUACGGGACAAGGAGUCG&UUAUUCCUUGUCCCGAAAAUA	3	0.3463093700072	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN9454_c0_g1_898_TPlot.pdf
TRINITY_DN9454_c0_g1:902	si_a331	TRINITY_DN9454_c0_g1	891	911	902	-30.60	-23.40	0.764705882352941	14	7-19,905-893	1-6,911-906[UP5];20-21,892-891[UP3]	..(((((((((((((......&......)))))))))))))..	UACGGGACAAGGAGUCGUUCU&UUUUUUAUUCCUUGUCCCGAA	3	0.497566143242175	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN9454_c0_g1_902_TPlot.pdf
TRINITY_DN9455_c0_g2:1406	si_s525	TRINITY_DN9455_c0_g2	1395	1415	1406	-24.00	-18.70	0.779166666666667	6	1-18,1415-1398	19-21,1397-1395[UP3]	...((((((((((((((((((&))))))))))))))))))...	CCAAAAGGUGAUUUCGGGUUA&UAAUUCGAAAUCAUUUUUGAU	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s525_TRINITY_DN9455_c0_g2_1406_TPlot.pdf
TRINITY_DN9455_c0_g2:1407	si_s524	TRINITY_DN9455_c0_g2	1396	1416	1407	-23.90	-18.90	0.790794979079498	6	2-19,1415-1398	1-1,1416-1416[UP5];20-21,1397-1396[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	CAAAAGGUGAUUUCGGGUUAU&UUAAUUCGAAAUCAUUUUUGA	4	0.281275915936225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN9455_c0_g2_1407_TPlot.pdf
TRINITY_DN9459_c0_g1:479	si_s532	TRINITY_DN9459_c0_g1	463	488	479	-28.70	-19.00	0.662020905923345	10	1-10,488-479;12-13,476-475;14-21,470-463	11-11,478-477[AILt];x-x,474-471[BULt]	((((((((....((..((((((((((&))))))))))-.))----))))))))	UGAUCGGAGUCCUCCUAGAGUGAUUU&AAAUCAUUUU-UGA----UCCGAUCA	4	0.997434602289588	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s532_TRINITY_DN9459_c0_g1_479_TPlot.pdf
TRINITY_DN9459_c0_g1:480	si_s531	TRINITY_DN9459_c0_g1	464	489	480	-30.00	-21.00	0.7	10	1-11,489-479;13-14,476-475;15-21,470-464	12-12,478-477[AILt];x-x,474-471[BULt]	(((((((....((..(((((((((((&)))))))))))-.))----)))))))	GAUCGGAGUCCUCCUAGAGUGAUUUC&GAAAUCAUUUU-UGA----UCCGAUC	4	0.636318062881682	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN9459_c0_g1_480_TPlot.pdf
TRINITY_DN9459_c0_g1:492	si_s520	TRINITY_DN9459_c0_g1	480	501	492	-24.00	-16.10	0.670833333333333	8	2-7,500-495;9-11,493-491;12-21,489-480	1-1,501-501[UP5];8-8,494-494[SIL];x-x,490-490[BULt]	((((((((((.(((.((((((.&.)))))).)))-))))))))))	GAGUGAUUUCUGAGAUAAGGAA&AUUCUUAAUUC-GAAAUCAUUU	4	0.978934552469426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s520_TRINITY_DN9459_c0_g1_492_TPlot.pdf
TRINITY_DN945_c0_g1:1043	si_s646	TRINITY_DN945_c0_g1	1031	1052	1043	-38.80	-25.50	0.657216494845361	9.5	3-9,1050-1044;11-12,1042-1041;13-20,1039-1032	1-2,1052-1051[UP5];10-10,1043-1043[SIL];x-x,1040-1040[BULt];21-21,1031-1031[UP3]	.((((((((.((.(((((((..&..))))))).))-)))))))).	AUCGAUUGUAGUGGAGGGCAUA&UUUGCCCUCGAU-ACAAUCGGG	3	0.859655409923595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s646_TRINITY_DN945_c0_g1_1043_TPlot.pdf
TRINITY_DN945_c0_g1:1604	si_s89	TRINITY_DN945_c0_g1	1595	1613	1604	-35.30	-25.80	0.730878186968839	5	1-10,1613-1604;12-14,1603-1601;16-21,1600-1595	11-11,x-x[BULq];15-15,x-x[BULq]	((((((-(((-((((((((((&)))))))))).))).))))))	CGAAGC-AAG-AGAAGGAGGG&CCUUUCUUCUUCUUCGCUUCG	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN945_c0_g1_1604_TPlot.pdf
TRINITY_DN945_c0_g1:1605	si_s88	TRINITY_DN945_c0_g1	1591	1614	1605	-34.80	-25.10	0.721264367816092	12	2-12,1613-1603;13-20,1599-1592	1-1,1614-1614[UP5];x-x,1602-1600[BULt];21-21,1591-1591[UP3]	.((((((((...(((((((((((.&.)))))))))))---)))))))).	UGGGCGAAGCAAGAGAAGGAGGGG&UCCUUUCUUCUU---CUUCGCUUC	3	0.999971513383237	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN945_c0_g1_1605_TPlot.pdf
TRINITY_DN945_c0_g1:1606	si_s87	TRINITY_DN945_c0_g1	1592	1615	1606	-32.90	-26.50	0.805471124620061	7.5	1-13,1615-1603;14-21,1599-1592	x-x,1602-1600[BULt]	((((((((...(((((((((((((&)))))))))))))---))))))))	GGGCGAAGCAAGAGAAGGAGGGGA&UUCCUUUCUUCUU---CUUCGCUU	4	0.898865286345239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN945_c0_g1_1606_TPlot.pdf
TRINITY_DN945_c0_g1:1608	si_s85	TRINITY_DN945_c0_g1	1594	1617	1608	-33.80	-25.10	0.742603550295858	9.5	3-15,1615-1603;16-21,1599-1594	1-2,1617-1616[UP5];x-x,1602-1600[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	GCGAAGCAAGAGAAGGAGGGGAUG&CUUUCCUUUCUUCUU---CUUCGC	3	0.999534511581805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN945_c0_g1_1608_TPlot.pdf
TRINITY_DN945_c0_g1:171	si_s84	TRINITY_DN945_c0_g1	157	180	171	-32.30	-21.80	0.674922600619195	8.5	1-10,180-171;11-19,167-159	x-x,170-168[BULt];20-21,158-157[UP3]	..(((((((((...((((((((((&))))))))))---)))))))))..	UCAAGAAGGAGUCCAAAGGAAAGA&UCUUUCCUUU---CUUCUUCUUCG	2	0.999999999930265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN945_c0_g1_171_TPlot.pdf
TRINITY_DN945_c0_g1:175	si_s80	TRINITY_DN945_c0_g1	161	184	175	-28.20	-21.90	0.776595744680851	5.5	2-14,183-171;15-21,167-161	1-1,184-184[UP5];x-x,170-168[BULt]	(((((((...(((((((((((((.&.)))))))))))))---)))))))	GAAGGAGUCCAAAGGAAAGAAAGU&UUUUUCUUUCCUUU---CUUCUUC	2	0.999570955846679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN945_c0_g1_175_TPlot.pdf
TRINITY_DN945_c0_g1:176	si_s79	TRINITY_DN945_c0_g1	162	185	176	-26.20	-18.70	0.713740458015267	7.5	3-15,183-171;16-21,167-162	1-2,185-184[UP5];x-x,170-168[BULt]	((((((...(((((((((((((..&..)))))))))))))---))))))	AAGGAGUCCAAAGGAAAGAAAGUU&UUUUUUCUUUCCUUU---CUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN945_c0_g1_176_TPlot.pdf
TRINITY_DN945_c0_g1:177	si_s78	TRINITY_DN945_c0_g1	163	186	177	-26.20	-17.80	0.679389312977099	9.5	4-16,183-171;17-21,167-163	1-3,186-184[UP5];x-x,170-168[BULt]	(((((...(((((((((((((...&...)))))))))))))---)))))	AGGAGUCCAAAGGAAAGAAAGUUA&UUUUUUUCUUUCCUUU---CUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN945_c0_g1_177_TPlot.pdf
TRINITY_DN9467_c0_g1:271	si_a193	TRINITY_DN9467_c0_g1	260	280	271	-30.90	-22.80	0.737864077669903	7	2-16,279-265	1-1,280-280[UP5];17-21,264-260[UP3]	.....(((((((((((((((.&.))))))))))))))).....	GUGGGUAGUGAAUAGGGAAAU&CUUUCCCUGUUCACUAAUAAA	2	0.463295406816406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a193_TRINITY_DN9467_c0_g1_271_TPlot.pdf
TRINITY_DN9468_c0_g1:664	si_s67	TRINITY_DN9468_c0_g1	652	672	664	-25.60	-17.20	0.671875	7	1-3,672-670;5-18,669-656;19-20,654-653	4-4,x-x[BULq];x-x,655-655[BULt];21-21,652-652[UP3]	.((.((((((((((((((-(((&))).))))))))))))))-)).	UAGCAAAGGAAAUGGAGG-UGC&GCAACUUCUAUUUUUUUU-CUU	4	0.99999999997982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN9468_c0_g1_664_TPlot.pdf
TRINITY_DN9468_c0_g1:670	si_s60	TRINITY_DN9468_c0_g1	660	678	670	-28.20	-19.60	0.695035460992908	6.5	1-6,678-673;8-10,672-670;12-21,669-660	7-7,x-x[BULq];11-11,x-x[BULq]	((((((((((-(((-((((((&)))))).))).))))))))))	GAAAUGGAGG-UGC-AGCUUG&CAAGUUAGCAACUUCUAUUUU	4	0.93963590642456	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN9468_c0_g1_670_TPlot.pdf
TRINITY_DN946_c0_g1:2162	si_a143	TRINITY_DN946_c0_g1	2151	2171	2162	-25.10	-16.80	0.669322709163347	12.5	6-18,2166-2154	1-5,2171-2167[UP5];19-21,2153-2151[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACAAAAGCAACAACGAACAAA&AUUAAUCGUUGUUGUUUUAAG	3	0.999993501102596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN946_c0_g1_2162_TPlot.pdf
TRINITY_DN946_c0_g1:2181	si_a471	TRINITY_DN946_c0_g1	2170	2190	2181	-21.10	-14.00	0.663507109004739	8	3-7,2188-2184;9-19,2182-2172	1-2,2190-2189[UP5];8-8,2183-2183[SIL];20-21,2171-2170[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	AAAUAACAAUAAUAACGUAGA&AAUAUGUAAUUAUUGUUAUAU	2	0.999925808258036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN946_c0_g1_2181_TPlot.pdf
TRINITY_DN946_c0_g1:3111	si_a837	TRINITY_DN946_c0_g1	3100	3120	3111	-25.80	-16.90	0.655038759689922	18	10-21,3111-3100	1-9,3120-3112[UP5]	((((((((((((.........&.........))))))))))))	GUUAGCAACUUUAAACAAGAC&AAAAAAAUAGAAGUUGCUAAC	2	0.944974176075585	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a837_TRINITY_DN946_c0_g1_3111_TPlot.pdf
TRINITY_DN946_c0_g1:3436	si_a637	TRINITY_DN946_c0_g1	3425	3445	3436	-25.80	-17.10	0.662790697674419	8	1-5,3445-3441;8-16,3438-3430;19-21,3427-3425	6-7,3440-3439[SIL];17-18,3429-3428[SIL]	(((..(((((((((..(((((&)))))..)))))))))..)))	AUAGAACUCAGAAGCCUCGAC&GUCGAUUUUUUUGAGUAAUAU	3	0.999999999436324	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN946_c0_g1_3436_TPlot.pdf
TRINITY_DN946_c0_g1:3437	si_a636	TRINITY_DN946_c0_g1	3426	3446	3437	-26.30	-17.30	0.657794676806084	10	1-6,3446-3441;9-17,3438-3430	7-8,3440-3439[SIL];18-21,3429-3426[UP3]	....(((((((((..((((((&))))))..)))))))))....	UAGAACUCAGAAGCCUCGACA&UGUCGAUUUUUUUGAGUAAUA	4	0.999999999912618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN946_c0_g1_3437_TPlot.pdf
TRINITY_DN946_c0_g1:3764	si_s72	TRINITY_DN946_c0_g1	3753	3776	3764	-24.10	-16.90	0.701244813278008	13	2-9,3775-3768;10-19,3764-3755	1-1,3776-3776[UP5];x-x,3767-3765[BULt];20-21,3754-3753[UP3]	..((((((((((...((((((((.&.))))))))---))))))))))..	ACGGGGAGAAAAUAAGAGAUGGAC&UUCUAUUUU---UUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN946_c0_g1_3764_TPlot.pdf
TRINITY_DN946_c0_g1:3769	si_a550	TRINITY_DN946_c0_g1	3756	3778	3769	-30.90	-20.28	0.656310679611651	11	4-13,3775-3766;16-21,3761-3756	1-3,3778-3776[UP5];14-15,3765-3762[AILt]	((((((....((((((((((...&...))))))))))--..))))))	GGGAGAAAAUAAGAGAUGGACAG&CAAUCUAUUUCUU--UAUCUCCC	2	0.991058844142749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN946_c0_g1_3769_TPlot.pdf
TRINITY_DN9471_c0_g1:897	si_s33	TRINITY_DN9471_c0_g1	886	907	897	-24.10	-16.20	0.672199170124481	7.5	1-3,907-905;5-5,903-903;6-20,901-887	4-4,904-904[SIL];x-x,902-902[BULt];21-21,886-886[UP3]	.(((((((((((((((.(.(((&))).)-))))))))))))))).	UAUUAUUAGAGGUUUGUGGUGC&GCAAC-UAAAUCUUUAAUAAUU	2	0.841504650573886	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s33_TRINITY_DN9471_c0_g1_897_TPlot.pdf
TRINITY_DN9472_c0_g1:1013	si_a478	TRINITY_DN9472_c0_g1	1002	1022	1013	-21.30	-14.30	0.671361502347418	11	2-16,1021-1007	1-1,1022-1022[UP5];17-21,1006-1002[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UUGACUUGUGUGACAGUGAUA&AAUUAUUGUUAUAUAGAAUAU	4	0.999945958749136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a478_TRINITY_DN9472_c0_g1_1013_TPlot.pdf
TRINITY_DN9472_c0_g1:1014	si_a477	TRINITY_DN9472_c0_g1	1003	1023	1014	-21.50	-14.30	0.665116279069767	11.5	3-17,1021-1007	1-2,1023-1022[UP5];18-21,1006-1003[UP3]	....(((((((((((((((..&..)))))))))))))))....	UGACUUGUGUGACAGUGAUAU&UAAUUAUUGUUAUAUAGAAUA	2	0.99735956867173	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a477_TRINITY_DN9472_c0_g1_1014_TPlot.pdf
TRINITY_DN9472_c0_g1:1076	si_s69	TRINITY_DN9472_c0_g1	1063	1085	1076	-23.40	-15.36	0.656410256410256	13	3-10,1083-1076;14-21,1070-1063	1-2,1085-1084[UP5];11-13,1075-1071[AILt]	((((((((.....((((((((..&..))))))))--...))))))))	GGAAGAAGUAUUUAAUAGAAGGA&AACUUCUAUU--UUUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9472_c0_g1_1076_TPlot.pdf
TRINITY_DN9472_c0_g1:1097	si_a779	TRINITY_DN9472_c0_g1	1079	1106	1097	-27.00	-18.30	0.677777777777778	19.5	3-11,1104-1096;12-21,1088-1079	1-2,1106-1105[UP5];x-x,1095-1089[BULt]	((((((((((.......(((((((((..&..)))))))))-------))))))))))	AGAAGGAUGGCCAAAAAGAGAGUUGACA&AUUCAACUCUU-------CUAUUUUUCU	4	0.99994814439953	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a779_TRINITY_DN9472_c0_g1_1097_TPlot.pdf
TRINITY_DN9472_c0_g1:491	si_s632	TRINITY_DN9472_c0_g1	480	501	491	-38.20	-26.70	0.698952879581152	9	1-7,501-495;8-9,493-492;11-21,490-480	x-x,494-494[BULt];10-10,491-491[SIL]	(((((((((((.((.(((((((&)))))))-)).)))))))))))	GGGCGGACGUCAACAGGGGAGA&UCUUUUC-GUAGGCGUUUGCCC	3	0.906381919280434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s632_TRINITY_DN9472_c0_g1_491_TPlot.pdf
TRINITY_DN9472_c0_g1:648	si_s64	TRINITY_DN9472_c0_g1	637	659	648	-24.10	-18.80	0.780082987551867	8.5	1-9,659-651;10-19,648-639	x-x,650-649[BULt];20-21,638-637[UP3]	..((((((((((..(((((((((&)))))))))--))))))))))..	CCAAAAGAUGGAGGAGUUGCUGA&UUAGCAACU--UCUAUUUUUUUU	3	0.838289486416027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN9472_c0_g1_648_TPlot.pdf
TRINITY_DN9472_c0_g1:650	si_a778	TRINITY_DN9472_c0_g1	639	659	650	-28.30	-19.30	0.681978798586572	10	5-20,655-640	1-4,659-656[UP5];21-21,639-639[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAAAGAUGGAGGAGUUGCUGA&GAUUCAACUCUUCUAUUUUUC	3	0.994270829770887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a778_TRINITY_DN9472_c0_g1_650_TPlot.pdf
TRINITY_DN9472_c0_g1:651	si_a777	TRINITY_DN9472_c0_g1	640	660	651	-27.00	-19.30	0.714814814814815	11	6-21,655-640	1-5,660-656[UP5]	((((((((((((((((.....&.....))))))))))))))))	AAAGAUGGAGGAGUUGCUGAA&UGAUUCAACUCUUCUAUUUUU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a777_TRINITY_DN9472_c0_g1_651_TPlot.pdf
TRINITY_DN9472_c0_g1:652	si_s62	TRINITY_DN9472_c0_g1	639	661	652	-26.50	-18.80	0.709433962264151	9	3-11,659-651;12-21,648-639	1-2,661-660[UP5];x-x,650-649[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	AAAAGAUGGAGGAGUUGCUGAAA&AGUUAGCAACU--UCUAUUUUUU	2	0.906028927011163	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN9472_c0_g1_652_TPlot.pdf
TRINITY_DN9472_c0_g1:653	si_s61	TRINITY_DN9472_c0_g1	640	662	653	-26.50	-18.00	0.679245283018868	11	4-12,659-651;13-21,648-640	1-3,662-660[UP5];x-x,650-649[BULt]	(((((((((..(((((((((...&...)))))))))--)))))))))	AAAGAUGGAGGAGUUGCUGAAAG&AAGUUAGCAACU--UCUAUUUUU	2	0.982920744291004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s61_TRINITY_DN9472_c0_g1_653_TPlot.pdf
TRINITY_DN9479_c0_g3:57	si_s104	TRINITY_DN9479_c0_g3	46	66	57	-32.70	-22.00	0.672782874617737	10	1-12,66-55;15-17,52-50	13-14,54-53[SIL];18-21,49-46[UP3]	....(((..((((((((((((&))))))))))))..)))....	ACAGAUUGGCCGGUCCGGGGC&GCUUCGGAUUGGAAAAUAGAA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s104_TRINITY_DN9479_c0_g3_57_TPlot.pdf
TRINITY_DN947_c0_g1:1099	si_a712	TRINITY_DN947_c0_g1	1083	1108	1099	-28.20	-21.10	0.74822695035461	8	2-14,1107-1095;15-21,1089-1083	1-1,1108-1108[UP5];x-x,1094-1090[BULt]	(((((((.....(((((((((((((.&.)))))))))))))-----)))))))	GAGUGAUAAAGAGAUUGUUUUGGAAA&AUUCCAAAAUAAUC-----GUUACUC	4	0.219412399046317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN947_c0_g1_1099_TPlot.pdf
TRINITY_DN947_c0_g1:1100	si_a711	TRINITY_DN947_c0_g1	1084	1110	1100	-27.90	-18.60	0.666666666666667	9	1-4,1110-1107;5-15,1105-1095;16-21,1089-1084	x-x,1106-1106[BULt];x-x,1094-1090[BULt]	((((((.....(((((((((((.((((&))))-)))))))))))-----))))))	AGUGAUAAAGAGAUUGUUUUGGAAAUG&CAUU-CCAAAAUAAUC-----GUUACU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a711_TRINITY_DN947_c0_g1_1100_TPlot.pdf
TRINITY_DN947_c0_g1:1105	si_a706	TRINITY_DN947_c0_g1	1094	1120	1105	-30.30	-20.30	0.66996699669967	16.5	2-7,1119-1114;8-20,1107-1095	1-1,1120-1120[UP5];x-x,1113-1108[BULt];21-21,1094-1094[UP3]	.(((((((((((((......((((((.&.))))))------))))))))))))).	AGAUUGUUUUGGAAAUGGAUUGUGCUG&UGGUACA------UUCCAAAAUAAUCG	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a706_TRINITY_DN947_c0_g1_1105_TPlot.pdf
TRINITY_DN947_c0_g1:1106	si_a705	TRINITY_DN947_c0_g1	1095	1121	1106	-30.50	-19.90	0.652459016393443	17.5	3-8,1119-1114;9-21,1107-1095	1-2,1121-1120[UP5];x-x,1113-1108[BULt]	(((((((((((((......((((((..&..))))))------)))))))))))))	GAUUGUUUUGGAAAUGGAUUGUGCUGU&CUGGUACA------UUCCAAAAUAAUC	4	0.934440122388308	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a705_TRINITY_DN947_c0_g1_1106_TPlot.pdf
TRINITY_DN9482_c0_g1:1016	si_a114	TRINITY_DN9482_c0_g1	1005	1025	1016	-27.90	-20.00	0.716845878136201	7	1-12,1025-1014;14-17,1012-1009	13-13,1013-1013[SIL];18-21,1008-1005[UP3]	....((((.((((((((((((&)))))))))))).))))....	CGGAGAAGGGAGCUCGUAUUU&AAAUACGAGCUUGUUUUAUAG	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN9482_c0_g1_1016_TPlot.pdf
TRINITY_DN9482_c0_g1:1018	si_a112	TRINITY_DN9482_c0_g1	1007	1027	1018	-26.20	-20.20	0.770992366412214	7.5	3-14,1025-1014;16-19,1012-1009	1-2,1027-1026[UP5];15-15,1013-1013[SIL];20-21,1008-1007[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	GAGAAGGGAGCUCGUAUUUCU&UAAAAUACGAGCUUGUUUUAU	4	0.504327675672549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN9482_c0_g1_1018_TPlot.pdf
TRINITY_DN9482_c0_g1:1020	si_a110	TRINITY_DN9482_c0_g1	1009	1029	1020	-27.80	-19.70	0.70863309352518	9.5	5-16,1025-1014;18-21,1012-1009	1-4,1029-1026[UP5];17-17,1013-1013[SIL]	((((.((((((((((((....&....)))))))))))).))))	GAAGGGAGCUCGUAUUUCUCC&GAUAAAAUACGAGCUUGUUUU	3	0.776433354332675	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a110_TRINITY_DN9482_c0_g1_1020_TPlot.pdf
TRINITY_DN9482_c0_g1:1021	si_a109	TRINITY_DN9482_c0_g1	1010	1030	1021	-28.50	-18.60	0.652631578947368	11	6-17,1025-1014;19-21,1012-1010	1-5,1030-1026[UP5];18-18,1013-1013[SIL]	(((.((((((((((((.....&.....)))))))))))).)))	AAGGGAGCUCGUAUUUCUCCG&AGAUAAAAUACGAGCUUGUUU	3	0.98108493846848	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a109_TRINITY_DN9482_c0_g1_1021_TPlot.pdf
TRINITY_DN9482_c0_g1:711	si_a9	TRINITY_DN9482_c0_g1	700	719	711	-29.60	-19.60	0.662162162162162	9.5	1-4,719-716;6-15,715-706	5-5,x-x[BULq];16-21,705-700[UP3]	......((((((((((-((((&)))).))))))))))......	GUCACGGGGCUUUCUC-UCGA&UUGAAGAGAAAGCCUAUUUAU	3	0.957491121773887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a9_TRINITY_DN9482_c0_g1_711_TPlot.pdf
TRINITY_DN9483_c0_g1:175	si_s798	TRINITY_DN9483_c0_g1	163	184	175	-29.30	-19.70	0.672354948805461	7.5	1-3,184-182;6-17,179-168;18-21,166-163	4-5,181-180[SIL];x-x,167-167[BULt]	((((.((((((((((((..(((&)))..))))))))))))-))))	GUGAGCGAAGGUAAAGUUGGAG&CUCGUAUUUUAUCUUCG-UUAC	4	0.999382582148696	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN9483_c0_g1_175_TPlot.pdf
TRINITY_DN9483_c0_g1:178	si_s795	TRINITY_DN9483_c0_g1	167	187	178	-30.30	-22.60	0.745874587458746	9	3-6,185-182;9-21,179-167	1-2,187-186[UP5];7-8,181-180[SIL]	(((((((((((((..((((..&..))))..)))))))))))))	GCGAAGGUAAAGUUGGAGCGC&AAGCUCGUAUUUUAUCUUCGU	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN9483_c0_g1_178_TPlot.pdf
TRINITY_DN9485_c0_g1:1586	si_s431	TRINITY_DN9485_c0_g1	1575	1595	1586	-21.10	-13.80	0.654028436018957	7.5	2-10,1594-1586;13-19,1583-1577	1-1,1595-1595[UP5];11-12,1585-1584[SIL];20-21,1576-1575[UP3]	..(((((((..(((((((((.&.)))))))))..)))))))..	UAAAUGUGUCCUUAUUGUUAA&AUAACAAUAAUUACAUAUUAU	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s431_TRINITY_DN9485_c0_g1_1586_TPlot.pdf
TRINITY_DN9488_c0_g1:1817	si_s562	TRINITY_DN9488_c0_g1	1806	1826	1817	-31.10	-21.40	0.688102893890675	12	6-18,1821-1809	1-5,1826-1822[UP5];19-21,1808-1806[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAGCUUGUCCCGAAAAACACU&UAAUAUUUUCGGGACAAGGAA	4	0.759328602813287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s562_TRINITY_DN9488_c0_g1_1817_TPlot.pdf
TRINITY_DN9488_c0_g1:1879	si_s60	TRINITY_DN9488_c0_g1	1868	1888	1879	-28.20	-20.90	0.74113475177305	5	1-10,1888-1879;12-16,1877-1873;18-21,1871-1868	11-11,1878-1878[SIL];17-17,1872-1872[SIL]	((((.(((((.((((((((((&)))))))))).))))).))))	AAAAAAGAAGAUGCUGGCUUG&CAAGUUAGCAACUUCUAUUUU	3	0.657993192177486	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN9488_c0_g1_1879_TPlot.pdf
TRINITY_DN9488_c0_g1:1884	si_s55	TRINITY_DN9488_c0_g1	1873	1893	1884	-30.80	-22.50	0.73051948051948	7.5	1-2,1893-1892;5-15,1889-1879;17-21,1877-1873	3-4,1891-1890[SIL];16-16,1878-1878[SIL]	(((((.(((((((((((..((&))..))))))))))).)))))	AGAAGAUGCUGGCUUGAUUUU&GAUUUCAAGUUAGCAACUUCU	4	0.427271612974229	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s55_TRINITY_DN9488_c0_g1_1884_TPlot.pdf
TRINITY_DN948_c0_g1:689	si_a628	TRINITY_DN948_c0_g1	678	698	689	-27.10	-17.88	0.659778597785978	13	1-4,698-695;8-17,691-682	5-7,694-692[SIL];18-21,681-678[UP3]	....((((((((((...((((&))))...))))))))))....	UUGCGGAUCGGCAUCGGGCGC&GCGUAUUAUGUCGAUUUUUUU	3	0.999999905516913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a628_TRINITY_DN948_c0_g1_689_TPlot.pdf
TRINITY_DN9491_c0_g1:3294	si_s312	TRINITY_DN9491_c0_g1	3283	3303	3294	-29.00	-19.40	0.668965517241379	11.5	5-16,3299-3288;18-20,3286-3284	1-4,3303-3300[UP5];17-17,3287-3287[SIL];21-21,3283-3283[UP3]	.(((.((((((((((((....&....)))))))))))).))).	CGACUGGGAGGAUAGAAAAUU&AAAAUUCUGUCCUUCUUGUUA	2	0.999999328332202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN9491_c0_g1_3294_TPlot.pdf
TRINITY_DN9492_c0_g1:1051	si_s87	TRINITY_DN9492_c0_g1	1040	1065	1051	-32.90	-23.10	0.702127659574468	15	1-6,1065-1060;7-9,1054-1052;11-20,1050-1041	x-x,1059-1055[BULt];10-10,1051-1051[SIL];21-21,1040-1040[UP3]	.((((((((((.(((.....((((((&))))))-----))).)))))))))).	CAGCGAAGAAGCGGAACCAAGAGGAA&UUCCUU-----UCUUCUUCUUCGCUU	2	0.99999949553299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9492_c0_g1_1051_TPlot.pdf
TRINITY_DN9492_c0_g1:1052	si_s86	TRINITY_DN9492_c0_g1	1041	1066	1052	-32.90	-23.30	0.708206686930091	15	2-7,1065-1060;8-10,1054-1052;12-21,1050-1041	1-1,1066-1066[UP5];x-x,1059-1055[BULt];11-11,1051-1051[SIL]	((((((((((.(((.....((((((.&.))))))-----))).))))))))))	AGCGAAGAAGCGGAACCAAGAGGAAU&UUUCCUU-----UCUUCUUCUUCGCU	4	0.999999998183402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9492_c0_g1_1052_TPlot.pdf
TRINITY_DN9492_c0_g1:1053	si_s85	TRINITY_DN9492_c0_g1	1042	1067	1053	-33.80	-22.10	0.653846153846154	17	3-8,1065-1060;9-11,1054-1052;13-21,1050-1042	1-2,1067-1066[UP5];x-x,1059-1055[BULt];12-12,1051-1051[SIL]	(((((((((.(((.....((((((..&..))))))-----))).)))))))))	GCGAAGAAGCGGAACCAAGAGGAAUU&CUUUCCUU-----UCUUCUUCUUCGC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN9492_c0_g1_1053_TPlot.pdf
TRINITY_DN9492_c0_g1:430	si_s84	TRINITY_DN9492_c0_g1	414	439	430	-32.30	-21.40	0.662538699690402	9	1-14,439-426;15-18,420-417;20-21,415-414	x-x,425-421[BULt];19-19,416-416[SIL]	((.((((.....((((((((((((((&))))))))))))))-----)))).))	CGCGGAACGGCUGAGGAAGGGAAAGG&UCUUUCCUUUCUUC-----UUCUUCG	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN9492_c0_g1_430_TPlot.pdf
TRINITY_DN9492_c0_g1:433	si_s81	TRINITY_DN9492_c0_g1	422	442	433	-28.90	-20.70	0.716262975778547	9	3-17,440-426;20-21,423-422	1-2,442-441[UP5];18-19,425-424[SIL]	((..(((((((((((((((..&..)))))))))))))))..))	GGCUGAGGAAGGGAAAGGGCU&UUUUCUUUCCUUUCUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9492_c0_g1_433_TPlot.pdf
TRINITY_DN9492_c0_g1:434	si_s80	TRINITY_DN9492_c0_g1	423	443	434	-28.20	-20.00	0.709219858156028	11.5	4-18,440-426	1-3,443-441[UP5];19-21,425-423[UP3]	...(((((((((((((((...&...)))))))))))))))...	GCUGAGGAAGGGAAAGGGCUG&UUUUUCUUUCCUUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9492_c0_g1_434_TPlot.pdf
TRINITY_DN9492_c0_g1:435	si_s79	TRINITY_DN9492_c0_g1	424	444	435	-26.20	-20.00	0.763358778625954	12	5-19,440-426	1-4,444-441[UP5];20-21,425-424[UP3]	..(((((((((((((((....&....)))))))))))))))..	CUGAGGAAGGGAAAGGGCUGC&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999778771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9492_c0_g1_435_TPlot.pdf
TRINITY_DN9492_c0_g1:436	si_s78	TRINITY_DN9492_c0_g1	425	445	436	-26.20	-20.00	0.763358778625954	13	6-20,440-426	1-5,445-441[UP5];21-21,425-425[UP3]	.(((((((((((((((.....&.....))))))))))))))).	UGAGGAAGGGAAAGGGCUGCA&UUUUUUUCUUUCCUUUCUUCU	3	0.99999999798204	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9492_c0_g1_436_TPlot.pdf
TRINITY_DN9493_c0_g1:475	si_a405	TRINITY_DN9493_c0_g1	464	486	475	-19.80	-13.90	0.702020202020202	7	2-7,485-480;8-19,477-466	1-1,486-486[UP5];x-x,479-478[BULt];20-21,465-464[UP3]	..((((((((((((..((((((.&.))))))--))))))))))))..	CAAAAUAUAAACAAUUAACAAUA&AAUUGUU--UUGUUUAUAUUUAA	4	0.999999999998967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN9493_c0_g1_475_TPlot.pdf
TRINITY_DN9496_c2_g2:1348	si_a353	TRINITY_DN9496_c2_g2	1338	1357	1348	-24.00	-16.40	0.683333333333333	6	2-7,1356-1351;9-11,1349-1347;13-21,1346-1338	1-1,1357-1357[UP5];8-8,1350-1350[SIL];12-12,x-x[BULq]	(((((((((-(((.((((((.&.)))))).))).)))))))))	CGAUCAAAA-AGAUUUGAUAA&AUAUUAAUUCUAUUUUGAUCG	4	0.986896755350028	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN9496_c2_g2_1348_TPlot.pdf
TRINITY_DN9496_c2_g2:3554	si_s77	TRINITY_DN9496_c2_g2	3543	3563	3554	-25.50	-16.60	0.650980392156863	14	7-14,3557-3550;16-21,3548-3543	1-6,3563-3558[UP5];15-15,3549-3549[SIL]	((((((.((((((((......&......)))))))).))))))	GAGGAGUGGGAAGAACAAGCU&UUUUUUUUCUUUCCUUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9496_c2_g2_3554_TPlot.pdf
TRINITY_DN94_c0_g1:264	si_a499	TRINITY_DN94_c0_g1	253	273	264	-35.20	-24.30	0.690340909090909	9	1-6,273-268;8-17,266-257	7-7,267-267[SIL];18-21,256-253[UP3]	....((((((((((.((((((&)))))).))))))))))....	GUUCGGAAGACGGAUGAUGAC&GUCGUUUUUCGUCUUCCUUGG	3	0.99999814754248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN94_c0_g1_264_TPlot.pdf
TRINITY_DN94_c0_g1:265	si_a498	TRINITY_DN94_c0_g1	254	274	265	-33.50	-24.40	0.728358208955224	9	2-7,273-268;9-18,266-257	1-1,274-274[UP5];8-8,267-267[SIL];19-21,256-254[UP3]	...((((((((((.((((((.&.)))))).))))))))))...	UUCGGAAGACGGAUGAUGACG&UGUCGUUUUUCGUCUUCCUUG	3	0.995855969223878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN94_c0_g1_265_TPlot.pdf
TRINITY_DN94_c0_g1:266	si_a497	TRINITY_DN94_c0_g1	255	275	266	-32.00	-24.40	0.7625	10	3-8,273-268;10-19,266-257	1-2,275-274[UP5];9-9,267-267[SIL];20-21,256-255[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UCGGAAGACGGAUGAUGACGA&AUGUCGUUUUUCGUCUUCCUU	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN94_c0_g1_266_TPlot.pdf
TRINITY_DN94_c0_g1:267	si_a496	TRINITY_DN94_c0_g1	256	276	267	-32.40	-24.40	0.753086419753086	11	4-9,273-268;11-20,266-257	1-3,276-274[UP5];10-10,267-267[SIL];21-21,256-256[UP3]	.((((((((((.((((((...&...)))))).)))))))))).	CGGAAGACGGAUGAUGACGAG&UAUGUCGUUUUUCGUCUUCCU	3	0.932284049489053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN94_c0_g1_267_TPlot.pdf
TRINITY_DN94_c0_g1:269	si_a494	TRINITY_DN94_c0_g1	258	278	269	-29.50	-20.70	0.701694915254237	13.5	6-11,273-268;13-21,266-258	1-5,278-274[UP5];12-12,267-267[SIL]	(((((((((.((((((.....&.....)))))).)))))))))	GAAGACGGAUGAUGACGAGGC&AAUAUGUCGUUUUUCGUCUUC	3	0.999948760723328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN94_c0_g1_269_TPlot.pdf
TRINITY_DN94_c0_g2:130	si_a460	TRINITY_DN94_c0_g2	119	139	130	-21.60	-14.70	0.680555555555555	9.5	1-5,139-135;8-18,132-122	6-7,134-133[SIL];19-21,121-119[UP3]	...(((((((((((..(((((&)))))..)))))))))))...	CAAGCAUAUUAUGUUCAGCAA&UUGUUAUAUAUAAUAUGUAAU	3	0.997600921553552	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN94_c0_g2_130_TPlot.pdf
TRINITY_DN94_c0_g2:358	si_s68	TRINITY_DN94_c0_g2	345	368	358	-23.10	-15.50	0.670995670995671	6	1-3,368-366;4-13,364-355;14-21,352-345	x-x,365-365[BULt];x-x,354-353[BULt]	((((((((..((((((((((.(((&)))-))))))))))--))))))))	GGAGAAAACUAAAAUAGAGGAUUG&CAA-CUUCUAUUUU--UUUUCUUU	2	0.999999999999778	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN94_c0_g2_358_TPlot.pdf
TRINITY_DN94_c0_g2:359	si_s67	TRINITY_DN94_c0_g2	346	369	359	-25.60	-17.30	0.67578125	6	1-4,369-366;5-14,364-355;15-21,352-346	x-x,365-365[BULt];x-x,354-353[BULt]	(((((((..((((((((((.((((&))))-))))))))))--)))))))	GAGAAAACUAAAAUAGAGGAUUGU&GCAA-CUUCUAUUUU--UUUUCUU	2	0.999997189631238	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN94_c0_g2_359_TPlot.pdf
TRINITY_DN94_c0_g2:460	si_s797	TRINITY_DN94_c0_g2	449	468	460	-30.00	-21.10	0.703333333333333	8.5	1-8,468-461;11-18,459-452	9-10,460-460[AILq];19-21,451-449[UP3]	...((((((((.-((((((((&))))))))..))))))))...	UGCUGAAGAUAU-AUGCGAGC&GCUCGUAUUUUAUCUUCGUUA	3	0.998299471568295	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN94_c0_g2_460_TPlot.pdf
TRINITY_DN94_c0_g2:461	si_s795	TRINITY_DN94_c0_g2	451	470	461	-30.30	-21.20	0.6996699669967	9.5	3-10,468-461;13-20,459-452	1-2,470-469[UP5];11-12,460-460[AILq];21-21,451-451[UP3]	.((((((((.-((((((((..&..))))))))..)))))))).	CUGAAGAUAU-AUGCGAGCAU&AAGCUCGUAUUUUAUCUUCGU	3	0.989269068114846	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN94_c0_g2_461_TPlot.pdf
TRINITY_DN94_c0_g2:462	si_s794	TRINITY_DN94_c0_g2	452	471	462	-31.20	-21.10	0.676282051282051	9.5	4-11,468-461;14-21,459-452	1-3,471-469[UP5];12-13,460-460[AILq]	((((((((.-((((((((...&...))))))))..))))))))	UGAAGAUAU-AUGCGAGCAUU&CAAGCUCGUAUUUUAUCUUCG	3	0.982905800322319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s794_TRINITY_DN94_c0_g2_462_TPlot.pdf
TRINITY_DN94_c0_g2:498	si_s877	TRINITY_DN94_c0_g2	487	508	498	-22.80	-15.00	0.657894736842105	6	1-8,508-501;9-16,499-492;18-20,490-488	x-x,500-500[BULt];17-17,491-491[SIL];21-21,487-487[UP3]	.(((.((((((((.((((((((&))))))))-)))))))).))).	AAUUAAUUUUUGGUUUCUGAGA&UCUUAGAA-CUAAAAAUAAAUA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s877_TRINITY_DN94_c0_g2_498_TPlot.pdf
TRINITY_DN94_c0_g2:499	si_s876	TRINITY_DN94_c0_g2	488	509	499	-24.20	-16.50	0.681818181818182	8.5	1-9,509-501;10-17,499-492	x-x,500-500[BULt];18-21,491-488[UP3]	....((((((((.(((((((((&)))))))))-))))))))....	AUUAAUUUUUGGUUUCUGAGAU&GUCUUAGAA-CUAAAAAUAAAU	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s876_TRINITY_DN94_c0_g2_499_TPlot.pdf
TRINITY_DN94_c0_g3:338	si_a585	TRINITY_DN94_c0_g3	325	347	338	-31.60	-20.90	0.661392405063291	12.5	4-11,344-337;13-21,333-325	1-3,347-345[UP5];12-12,336-334[AILt]	(((((((((...((((((((...&...))))))))--.)))))))))	GUUCUGUCCGGCUCUUGUUGAGA&UUGUAACAAGA--AGGACAGAAU	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a585_TRINITY_DN94_c0_g3_338_TPlot.pdf
TRINITY_DN94_c0_g3:371	si_a463	TRINITY_DN94_c0_g3	360	380	371	-19.70	-12.90	0.654822335025381	7.5	1-8,380-373;11-19,370-362	9-10,372-371[SIL];20-21,361-360[UP3]	..(((((((((..((((((((&))))))))..)))))))))..	AAAAUUGCAUAACAUAUGUAA&UUAUAUAUAAUAUGUAAUUAU	3	0.999972084264433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN94_c0_g3_371_TPlot.pdf
TRINITY_DN94_c1_g1:1033	si_a462	TRINITY_DN94_c1_g1	1022	1042	1033	-21.20	-14.30	0.674528301886792	9	1-12,1042-1031;14-17,1029-1026	13-13,1030-1030[SIL];18-21,1025-1022[UP3]	....((((.((((((((((((&)))))))))))).))))....	GAGAUGCGAAUUGUAUGUGAC&GUUAUAUAUAAUAUGUAAUUA	3	0.99871914862942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN94_c1_g1_1033_TPlot.pdf
TRINITY_DN94_c1_g1:1034	si_a461	TRINITY_DN94_c1_g1	1023	1043	1034	-21.50	-15.30	0.711627906976744	8	1-13,1043-1031;15-18,1029-1026	14-14,1030-1030[SIL];19-21,1025-1023[UP3]	...((((.(((((((((((((&))))))))))))).))))...	AGAUGCGAAUUGUAUGUGACA&UGUUAUAUAUAAUAUGUAAUU	2	0.81133530567248	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN94_c1_g1_1034_TPlot.pdf
TRINITY_DN94_c1_g1:1035	si_a460	TRINITY_DN94_c1_g1	1024	1044	1035	-21.60	-16.20	0.75	7	1-14,1044-1031;16-19,1029-1026	15-15,1030-1030[SIL];20-21,1025-1024[UP3]	..((((.((((((((((((((&)))))))))))))).))))..	GAUGCGAAUUGUAUGUGACAA&UUGUUAUAUAUAAUAUGUAAU	2	0.581563619402435	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN94_c1_g1_1035_TPlot.pdf
TRINITY_DN94_c1_g1:1036	si_a459	TRINITY_DN94_c1_g1	1025	1045	1036	-23.20	-16.20	0.698275862068966	7	2-15,1044-1031;17-20,1029-1026	1-1,1045-1045[UP5];16-16,1030-1030[SIL];21-21,1025-1025[UP3]	.((((.((((((((((((((.&.)))))))))))))).)))).	AUGCGAAUUGUAUGUGACAAG&GUUGUUAUAUAUAAUAUGUAA	3	0.959177833459815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN94_c1_g1_1036_TPlot.pdf
TRINITY_DN94_c1_g1:1037	si_a458	TRINITY_DN94_c1_g1	1026	1046	1037	-23.80	-16.70	0.701680672268908	6.5	1-1,1046-1046;3-16,1044-1031;18-21,1029-1026	2-2,1045-1045[SIL];17-17,1030-1030[SIL]	((((.((((((((((((((.(&).)))))))))))))).))))	UGCGAAUUGUAUGUGACAAGA&UGUUGUUAUAUAUAAUAUGUA	3	0.926572597120263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN94_c1_g1_1037_TPlot.pdf
TRINITY_DN94_c1_g1:1038	si_a457	TRINITY_DN94_c1_g1	1027	1047	1038	-23.50	-15.80	0.672340425531915	7.5	2-2,1046-1046;4-17,1044-1031;19-21,1029-1027	1-1,1047-1047[UP5];3-3,1045-1045[SIL];18-18,1030-1030[SIL]	(((.((((((((((((((.(.&.).)))))))))))))).)))	GCGAAUUGUAUGUGACAAGAG&UUGUUGUUAUAUAUAAUAUGU	2	0.963051470917185	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN94_c1_g1_1038_TPlot.pdf
TRINITY_DN94_c1_g1:1040	si_a455	TRINITY_DN94_c1_g1	1029	1049	1040	-21.10	-14.30	0.677725118483412	11.5	4-4,1046-1046;6-19,1044-1031	1-3,1049-1047[UP5];5-5,1045-1045[SIL];20-21,1030-1029[UP3]	..((((((((((((((.(...&...).))))))))))))))..	GAAUUGUAUGUGACAAGAGAA&AAUUGUUGUUAUAUAUAAUAU	3	0.99999899076026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN94_c1_g1_1040_TPlot.pdf
TRINITY_DN94_c1_g1:1041	si_a454	TRINITY_DN94_c1_g1	1030	1050	1041	-21.30	-14.30	0.671361502347418	12	5-5,1046-1046;7-20,1044-1031	1-4,1050-1047[UP5];6-6,1045-1045[SIL];21-21,1030-1030[UP3]	.((((((((((((((.(....&....).)))))))))))))).	AAUUGUAUGUGACAAGAGAAU&UAAUUGUUGUUAUAUAUAAUA	3	0.999996734733913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN94_c1_g1_1041_TPlot.pdf
TRINITY_DN94_c1_g1:1042	si_a453	TRINITY_DN94_c1_g1	1031	1051	1042	-21.10	-14.00	0.663507109004739	13	6-6,1046-1046;8-21,1044-1031	1-5,1051-1047[UP5];7-7,1045-1045[SIL]	((((((((((((((.(.....&.....).))))))))))))))	AUUGUAUGUGACAAGAGAAUA&AUAAUUGUUGUUAUAUAUAAU	3	0.999999924378671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN94_c1_g1_1042_TPlot.pdf
TRINITY_DN94_c1_g1:598	si_a649	TRINITY_DN94_c1_g1	587	607	598	-32.90	-21.60	0.656534954407295	6.5	1-11,607-597;12-15,595-592;18-19,590-589;21-21,587-587	x-x,596-596[BULt];16-17,591-591[AILq];20-20,588-588[SIL]	(.((.-((((.(((((((((((&)))))))))))-))))..)).)	GGGUG-CCCGAAUAUAUUGCUC&GAGUAAUAUAU-CGGGAAAUGC	4	0.791709030763818	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a649_TRINITY_DN94_c1_g1_598_TPlot.pdf
TRINITY_DN94_c1_g1:599	si_a648	TRINITY_DN94_c1_g1	587	608	599	-31.10	-22.00	0.707395498392283	8	1-12,608-597;13-16,595-592	x-x,596-596[BULt];17-21,591-587[UP3]	.....((((.((((((((((((&))))))))))))-)))).....	GGGUGCCCGAAUAUAUUGCUCA&UGAGUAAUAUAU-CGGGAAAUG	3	0.276678714298894	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a648_TRINITY_DN94_c1_g1_599_TPlot.pdf
TRINITY_DN94_c1_g1:600	si_a647	TRINITY_DN94_c1_g1	588	609	600	-29.50	-22.90	0.776271186440678	6	1-13,609-597;14-17,595-592	x-x,596-596[BULt];18-21,591-588[UP3]	....((((.(((((((((((((&)))))))))))))-))))....	GGUGCCCGAAUAUAUUGCUCAA&UUGAGUAAUAUAU-CGGGAAAU	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN94_c1_g1_600_TPlot.pdf
TRINITY_DN94_c1_g1:601	si_a646	TRINITY_DN94_c1_g1	589	610	601	-29.40	-23.60	0.802721088435374	5	1-14,610-597;15-18,595-592	x-x,596-596[BULt];19-21,591-589[UP3]	...((((.((((((((((((((&))))))))))))))-))))...	GUGCCCGAAUAUAUUGCUCAAA&UUUGAGUAAUAUAU-CGGGAAA	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN94_c1_g1_601_TPlot.pdf
TRINITY_DN94_c1_g1:603	si_a644	TRINITY_DN94_c1_g1	591	612	603	-29.30	-23.80	0.812286689419795	6	3-16,610-597;17-20,595-592	1-2,612-611[UP5];x-x,596-596[BULt];21-21,591-591[UP3]	.((((.((((((((((((((..&..))))))))))))))-)))).	GCCCGAAUAUAUUGCUCAAAUU&UUUUUGAGUAAUAUAU-CGGGA	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN94_c1_g1_603_TPlot.pdf
TRINITY_DN94_c1_g1:604	si_a643	TRINITY_DN94_c1_g1	592	613	604	-28.30	-23.60	0.833922261484099	7	4-17,610-597;18-21,595-592	1-3,613-611[UP5];x-x,596-596[BULt]	((((.((((((((((((((...&...))))))))))))))-))))	CCCGAAUAUAUUGCUCAAAUUU&UUUUUUGAGUAAUAUAU-CGGG	3	0.0589241935480032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN94_c1_g1_604_TPlot.pdf
TRINITY_DN94_c1_g1:607	si_a640	TRINITY_DN94_c1_g1	596	618	607	-24.10	-17.08	0.708713692946058	10.5	1-4,618-615;7-20,610-597	5-6,614-611[AILt];21-21,596-596[UP3]	.((((((((((((((....((((&))))--..)))))))))))))).	AAUAUAUUGCUCAAAUUUUAGUC&GAUU--UUUUUGAGUAAUAUAUC	3	0.971644082676048	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN94_c1_g1_607_TPlot.pdf
TRINITY_DN94_c1_g1:608	si_a639	TRINITY_DN94_c1_g1	597	619	608	-23.60	-17.18	0.727966101694915	10.5	2-5,618-615;8-21,610-597	1-1,619-619[UP5];6-7,614-611[AILt]	((((((((((((((....((((.&.))))--..))))))))))))))	AUAUAUUGCUCAAAUUUUAGUCA&CGAUU--UUUUUGAGUAAUAUAU	3	0.979070119719714	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN94_c1_g1_608_TPlot.pdf
TRINITY_DN94_c1_g1:609	si_a638	TRINITY_DN94_c1_g1	598	620	609	-24.40	-15.98	0.654918032786885	12.5	3-6,618-615;9-21,610-598	1-2,620-619[UP5];7-8,614-611[AILt]	(((((((((((((....((((..&..))))--..)))))))))))))	UAUAUUGCUCAAAUUUUAGUCAG&UCGAUU--UUUUUGAGUAAUAUA	3	0.999999987521156	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN94_c1_g1_609_TPlot.pdf
TRINITY_DN94_c1_g1:660	si_a647	TRINITY_DN94_c1_g1	649	669	660	-29.50	-20.40	0.691525423728814	7	1-15,669-655	16-21,654-649[UP3]	......(((((((((((((((&)))))))))))))))......	CUAGAACGAUAUAUUGCUCAA&UUGAGUAAUAUAUCGGGAAAU	3	0.789606838632854	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN94_c1_g1_660_TPlot.pdf
TRINITY_DN94_c1_g1:661	si_a646	TRINITY_DN94_c1_g1	650	670	661	-29.40	-21.10	0.717687074829932	6	1-16,670-655	17-21,654-650[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAGAACGAUAUAUUGCUCAAA&UUUGAGUAAUAUAUCGGGAAA	2	0.449767929823764	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a646_TRINITY_DN94_c1_g1_661_TPlot.pdf
TRINITY_DN94_c1_g1:663	si_a644	TRINITY_DN94_c1_g1	652	672	663	-29.30	-21.30	0.726962457337884	7	3-18,670-655	1-2,672-671[UP5];19-21,654-652[UP3]	...((((((((((((((((..&..))))))))))))))))...	GAACGAUAUAUUGCUCAAAUU&UUUUUGAGUAAUAUAUCGGGA	3	0.664847121413161	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a644_TRINITY_DN94_c1_g1_663_TPlot.pdf
TRINITY_DN94_c1_g1:664	si_a643	TRINITY_DN94_c1_g1	653	673	664	-28.30	-21.30	0.752650176678445	8	4-19,670-655	1-3,673-671[UP5];20-21,654-653[UP3]	..((((((((((((((((...&...))))))))))))))))..	AACGAUAUAUUGCUCAAAUUU&UUUUUUGAGUAAUAUAUCGGG	3	0.487291291615223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a643_TRINITY_DN94_c1_g1_664_TPlot.pdf
TRINITY_DN94_c1_g1:665	si_a642	TRINITY_DN94_c1_g1	654	674	665	-25.90	-21.30	0.822393822393822	9	5-20,670-655	1-4,674-671[UP5];21-21,654-654[UP3]	.((((((((((((((((....&....)))))))))))))))).	ACGAUAUAUUGCUCAAAUUUU&UUUUUUUGAGUAAUAUAUCGG	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN94_c1_g1_665_TPlot.pdf
TRINITY_DN94_c1_g1:666	si_a641	TRINITY_DN94_c1_g1	655	675	666	-23.60	-20.80	0.88135593220339	10	6-21,670-655	1-5,675-671[UP5]	((((((((((((((((.....&.....))))))))))))))))	CGAUAUAUUGCUCAAAUUUUA&AUUUUUUUGAGUAAUAUAUCG	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN94_c1_g1_666_TPlot.pdf
TRINITY_DN94_c1_g1:667	si_a640	TRINITY_DN94_c1_g1	656	678	667	-24.10	-20.38	0.845643153526971	8.5	1-4,678-675;7-21,670-656	5-6,674-671[AILt]	(((((((((((((((....((((&))))--..)))))))))))))))	GAUAUAUUGCUCAAAUUUUAAUC&GAUU--UUUUUGAGUAAUAUAUC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a640_TRINITY_DN94_c1_g1_667_TPlot.pdf
TRINITY_DN94_c1_g1:668	si_a639	TRINITY_DN94_c1_g1	657	679	668	-23.60	-19.18	0.81271186440678	8.5	1-5,679-675;8-21,670-657	6-7,674-671[AILt]	((((((((((((((....(((((&)))))--..))))))))))))))	AUAUAUUGCUCAAAUUUUAAUCG&CGAUU--UUUUUGAGUAAUAUAU	3	0.246792146076897	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a639_TRINITY_DN94_c1_g1_668_TPlot.pdf
TRINITY_DN94_c1_g1:669	si_a638	TRINITY_DN94_c1_g1	658	680	669	-24.40	-19.38	0.794262295081967	8.5	1-6,680-675;9-21,670-658	7-8,674-671[AILt]	(((((((((((((....((((((&))))))--..)))))))))))))	UAUAUUGCUCAAAUUUUAAUCGA&UCGAUU--UUUUUGAGUAAUAUA	3	0.319299837734936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a638_TRINITY_DN94_c1_g1_669_TPlot.pdf
TRINITY_DN94_c1_g1:670	si_a637	TRINITY_DN94_c1_g1	659	681	670	-25.80	-21.48	0.832558139534884	8.5	1-7,681-675;10-21,670-659	8-9,674-671[AILt]	((((((((((((....(((((((&)))))))--..))))))))))))	AUAUUGCUCAAAUUUUAAUCGAC&GUCGAUU--UUUUUGAGUAAUAU	3	0.199631051229747	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN94_c1_g1_670_TPlot.pdf
TRINITY_DN94_c1_g1:671	si_a636	TRINITY_DN94_c1_g1	660	682	671	-26.30	-20.58	0.782509505703422	9.5	2-8,681-675;11-21,670-660	1-1,682-682[UP5];9-10,674-671[AILt]	(((((((((((....(((((((.&.)))))))--..)))))))))))	UAUUGCUCAAAUUUUAAUCGACG&UGUCGAUU--UUUUUGAGUAAUA	2	0.414438697204711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN94_c1_g1_671_TPlot.pdf
TRINITY_DN94_c1_g1:672	si_a635	TRINITY_DN94_c1_g1	661	683	672	-26.10	-19.18	0.734865900383142	11.5	3-9,681-675;12-21,670-661	1-2,683-682[UP5];10-11,674-671[AILt]	((((((((((....(((((((..&..)))))))--..))))))))))	AUUGCUCAAAUUUUAAUCGACGA&AUGUCGAUU--UUUUUGAGUAAU	2	0.946326988111605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN94_c1_g1_672_TPlot.pdf
TRINITY_DN94_c1_g1:675	si_a634	TRINITY_DN94_c1_g1	662	684	675	-26.40	-18.18	0.688636363636364	13.5	4-10,681-675;13-21,670-662	1-3,684-682[UP5];11-12,674-671[AILt]	(((((((((....(((((((...&...)))))))--..)))))))))	UUGCUCAAAUUUUAAUCGACGAC&UAUGUCGAUU--UUUUUGAGUAA	2	0.99927635706567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a634_TRINITY_DN94_c1_g1_675_TPlot.pdf
TRINITY_DN94_c1_g1:676	si_a633	TRINITY_DN94_c1_g1	663	685	676	-26.40	-17.38	0.658333333333333	14.5	5-11,681-675;14-21,670-663	1-4,685-682[UP5];12-13,674-671[AILt]	((((((((....(((((((....&....)))))))--..))))))))	UGCUCAAAUUUUAAUCGACGACA&UUAUGUCGAUU--UUUUUGAGUA	2	0.999999576202239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN94_c1_g1_676_TPlot.pdf
TRINITY_DN94_c1_g1:709	si_s68	TRINITY_DN94_c1_g1	694	718	709	-23.10	-17.18	0.743722943722944	13	1-10,718-709;12-21,703-694	11-11,708-704[AILt]	((((((((((.....((((((((((&))))))))))----.))))))))))	GAAGAAGAAGUGUGUAUAGGAGUUG&CAACUUCUAU----UUUUUUUCUUU	2	0.99799202447821	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN94_c1_g1_709_TPlot.pdf
TRINITY_DN94_c1_g1:971	si_a114	TRINITY_DN94_c1_g1	960	980	971	-27.90	-18.50	0.663082437275986	8.5	3-18,978-963	1-2,980-979[UP5];19-21,962-960[UP3]	...((((((((((((((((..&..))))))))))))))))...	CAUUAGAACAAGUUUGUAUAG&AAAUACGAGCUUGUUUUAUAG	2	0.972249207034049	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a114_TRINITY_DN94_c1_g1_971_TPlot.pdf
TRINITY_DN94_c1_g1:972	si_a113	TRINITY_DN94_c1_g1	961	981	972	-26.20	-18.50	0.706106870229008	9.5	4-19,978-963	1-3,981-979[UP5];20-21,962-961[UP3]	..((((((((((((((((...&...))))))))))))))))..	AUUAGAACAAGUUUGUAUAGA&AAAAUACGAGCUUGUUUUAUA	2	0.903660414529669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN94_c1_g1_972_TPlot.pdf
TRINITY_DN94_c1_g1:973	si_a112	TRINITY_DN94_c1_g1	962	982	973	-26.20	-18.50	0.706106870229008	10.5	5-20,978-963	1-4,982-979[UP5];21-21,962-962[UP3]	.((((((((((((((((....&....)))))))))))))))).	UUAGAACAAGUUUGUAUAGAC&UAAAAUACGAGCUUGUUUUAU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN94_c1_g1_973_TPlot.pdf
TRINITY_DN94_c1_g1:974	si_a111	TRINITY_DN94_c1_g1	963	983	974	-26.20	-18.40	0.702290076335878	11.5	6-21,978-963	1-5,983-979[UP5]	((((((((((((((((.....&.....))))))))))))))))	UAGAACAAGUUUGUAUAGACC&AUAAAAUACGAGCUUGUUUUA	4	0.955709993464544	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN94_c1_g1_974_TPlot.pdf
TRINITY_DN9501_c0_g1:1129	si_s724	TRINITY_DN9501_c0_g1	1118	1138	1129	-31.70	-21.50	0.678233438485804	12	6-14,1133-1125;16-21,1123-1118	1-5,1138-1134[UP5];15-15,1124-1124[SIL]	((((((.(((((((((.....&.....))))))))).))))))	ACCCGUGUAGAUAGUGGACAC&AAAGAUAUUAUCUAGACGGGU	4	0.743953368286767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s724_TRINITY_DN9501_c0_g1_1129_TPlot.pdf
TRINITY_DN9501_c0_g1:491	si_s316	TRINITY_DN9501_c0_g1	479	500	491	-31.50	-21.30	0.676190476190476	8	1-8,500-493;10-13,491-488;14-18,486-482	9-9,492-492[SIL];x-x,487-487[BULt];19-21,481-479[UP3]	...(((((.((((.((((((((&)))))))).))))-)))))...	AGAGUGACGGAGGCGGACAGAA&UUCUGUCCUUCUU-GUUACAAA	2	0.995018675217676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN9501_c0_g1_491_TPlot.pdf
TRINITY_DN9501_c0_g1:492	si_s315	TRINITY_DN9501_c0_g1	480	501	492	-31.60	-21.30	0.674050632911392	8	2-9,500-493;11-14,491-488;15-19,486-482	1-1,501-501[UP5];10-10,492-492[SIL];x-x,487-487[BULt];20-21,481-480[UP3]	..(((((.((((.((((((((.&.)))))))).))))-)))))..	GAGUGACGGAGGCGGACAGAAG&AUUCUGUCCUUCUU-GUUACAA	4	0.99988637851864	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s315_TRINITY_DN9501_c0_g1_492_TPlot.pdf
TRINITY_DN9501_c0_g1:493	si_s314	TRINITY_DN9501_c0_g1	481	502	493	-31.50	-21.30	0.676190476190476	9	3-10,500-493;12-15,491-488;16-20,486-482	1-2,502-501[UP5];11-11,492-492[SIL];x-x,487-487[BULt];21-21,481-481[UP3]	.(((((.((((.((((((((..&..)))))))).))))-))))).	AGUGACGGAGGCGGACAGAAGA&AAUUCUGUCCUUCUU-GUUACA	2	0.996018473863355	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s314_TRINITY_DN9501_c0_g1_493_TPlot.pdf
TRINITY_DN9501_c0_g1:494	si_s313	TRINITY_DN9501_c0_g1	482	503	494	-30.80	-20.80	0.675324675324675	9.5	4-11,500-493;13-16,491-488;17-21,486-482	1-3,503-501[UP5];12-12,492-492[SIL];x-x,487-487[BULt]	(((((.((((.((((((((...&...)))))))).))))-)))))	GUGACGGAGGCGGACAGAAGAA&AAAUUCUGUCCUUCUU-GUUAC	3	0.999962179607376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN9501_c0_g1_494_TPlot.pdf
TRINITY_DN9501_c0_g1:498	si_s91	TRINITY_DN9501_c0_g1	485	507	498	-34.70	-24.50	0.706051873198847	8.5	1-11,507-497;12-18,494-488;20-20,486-486	x-x,496-495[BULt];19-19,487-487[SIL];21-21,485-485[UP3]	.(.(((((((..(((((((((((&)))))))))))--))))))).).	ACGGAGGCGGACAGAAGAAGAGA&UUUCUUCUUCU--UCGCUUCGGA	4	0.999993553194868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN9501_c0_g1_498_TPlot.pdf
TRINITY_DN9501_c0_g1:499	si_s90	TRINITY_DN9501_c0_g1	486	508	499	-35.30	-24.70	0.69971671388102	8	2-12,507-497;13-19,494-488;21-21,486-486	1-1,508-508[UP5];x-x,496-495[BULt];20-20,487-487[SIL]	(.(((((((..(((((((((((.&.)))))))))))--))))))).)	CGGAGGCGGACAGAAGAAGAGAA&CUUUCUUCUUCU--UCGCUUCGG	4	0.999999291884269	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN9501_c0_g1_499_TPlot.pdf
TRINITY_DN9501_c0_g1:500	si_s89	TRINITY_DN9501_c0_g1	487	512	500	-35.30	-24.60	0.696883852691218	10	1-4,512-509;5-13,505-497;14-20,494-488	x-x,508-506[BULt];x-x,496-495[BULt];21-21,487-487[UP3]	.(((((((..(((((((((...((((&))))---)))))))))--))))))).	GGAGGCGGACAGAAGAAGAGAAAAGG&CCUU---UCUUCUUCU--UCGCUUCG	4	0.99999995260776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9501_c0_g1_500_TPlot.pdf
TRINITY_DN9501_c0_g1:502	si_s87	TRINITY_DN9501_c0_g1	489	514	502	-32.90	-22.80	0.693009118541034	9.5	1-6,514-509;7-15,505-497;16-21,494-489	x-x,508-506[BULt];x-x,496-495[BULt]	((((((..(((((((((...((((((&))))))---)))))))))--))))))	AGGCGGACAGAAGAAGAGAAAAGGAG&UUCCUU---UCUUCUUCU--UCGCUU	2	0.999999976680179	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9501_c0_g1_502_TPlot.pdf
TRINITY_DN9501_c0_g1:503	si_s86	TRINITY_DN9501_c0_g1	490	515	503	-32.90	-22.50	0.683890577507599	10.5	1-7,515-509;8-16,505-497;17-21,494-490	x-x,508-506[BULt];x-x,496-495[BULt]	(((((..(((((((((...(((((((&)))))))---)))))))))--)))))	GGCGGACAGAAGAAGAGAAAAGGAGG&UUUCCUU---UCUUCUUCU--UCGCU	2	0.999999998472554	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9501_c0_g1_503_TPlot.pdf
TRINITY_DN9501_c0_g1:508	si_s69	TRINITY_DN9501_c0_g1	497	517	508	-23.40	-17.40	0.743589743589744	8	2-7,516-511;9-20,509-498	1-1,517-517[UP5];8-8,510-510[SIL];21-21,497-497[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	AGAAGAAGAGAAAAGGAGGUG&AACUUCUAUUUUUUUUCUUUC	3	0.999999989808071	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9501_c0_g1_508_TPlot.pdf
TRINITY_DN9502_c1_g1:21	si_a665	TRINITY_DN9502_c1_g1	10	30	21	-29.60	-19.50	0.658783783783784	11	3-7,28-24;9-16,22-15	1-2,30-29[UP5];8-8,23-23[SIL];17-21,14-10[UP3]	.....((((((((.(((((..&..))))).)))))))).....	AAAGCGGAAUCAAAGGGCACU&AAUGCCUAUUGAUUCCUUAUU	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a665_TRINITY_DN9502_c1_g1_21_TPlot.pdf
TRINITY_DN9504_c0_g1:1382	si_s190	TRINITY_DN9504_c0_g1	1371	1390	1382	-28.00	-19.50	0.696428571428571	6	1-3,1390-1388;5-17,1387-1375;19-21,1373-1371	4-4,x-x[BULq];18-18,1374-1374[SIL]	(((.(((((((((((((-(((&))).))))))))))))).)))	ACAGUCCAAGAUGAUUG-UAC&GUAACGAUUAUUUUGGAAUGU	4	0.804216605967342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s190_TRINITY_DN9504_c0_g1_1382_TPlot.pdf
TRINITY_DN9505_c0_g1:2020	si_a469	TRINITY_DN9505_c0_g1	2009	2029	2020	-21.10	-13.80	0.654028436018957	14	7-19,2023-2011	1-6,2029-2024[UP5];20-21,2010-2009[UP3]	..(((((((((((((......&......)))))))))))))..	AAGACGAUAAUUACAAUUUCG&AUAAUAUGUAAUUAUUGUUAU	2	0.999843442746574	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN9505_c0_g1_2020_TPlot.pdf
TRINITY_DN9505_c0_g1:316	si_s97	TRINITY_DN9505_c0_g1	300	325	316	-36.30	-23.60	0.650137741046832	18	1-4,325-322;7-11,319-315;12-19,309-302	5-6,321-320[SIL];x-x,314-310[BULt];20-21,301-300[UP3]	..((((((((.....(((((..((((&))))..)))))-----))))))))..	AGCCAAUCCGCAUUCAGGCGUUGGAG&CUUCUUCGCUU-----CGGAUUGGAA	2	0.999596841779756	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN9505_c0_g1_316_TPlot.pdf
TRINITY_DN9505_c0_g1:317	si_s96	TRINITY_DN9505_c0_g1	301	327	317	-37.20	-24.20	0.650537634408602	18	1-6,327-322;8-12,319-315;13-20,309-302	7-7,321-320[AILt];x-x,314-310[BULt];21-21,301-301[UP3]	.((((((((.....(((((..((((((&))))))-.)))))-----)))))))).	GCCAAUCCGCAUUCAGGCGUUGGAGGA&UCUUCU-UCGCUU-----CGGAUUGGA	3	0.999984791192561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s96_TRINITY_DN9505_c0_g1_317_TPlot.pdf
TRINITY_DN9506_c1_g1:1408	si_s74	TRINITY_DN9506_c1_g1	1397	1417	1408	-25.00	-19.50	0.78	5.5	2-18,1416-1400	1-1,1417-1417[UP5];19-21,1399-1397[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UACAGGAGAGAGAAAAAAUAA&CUAUUUUUUUUCUUUCCUUUC	4	0.99948726210224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9506_c1_g1_1408_TPlot.pdf
TRINITY_DN9519_c0_g2:392	si_s612	TRINITY_DN9519_c0_g2	381	401	392	-28.20	-19.60	0.695035460992908	8	1-7,401-395;9-21,393-381	8-8,394-394[SIL]	(((((((((((((.(((((((&))))))).)))))))))))))	AUUGUUUGGGUUUUGGGAGGA&UCUUUUUUAAAUCCAAGCGAU	3	0.844706005138274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN9519_c0_g2_392_TPlot.pdf
TRINITY_DN9519_c0_g2:517	si_s78	TRINITY_DN9519_c0_g2	505	526	517	-26.20	-18.20	0.694656488549618	9	1-3,526-524;6-11,521-516;12-20,514-506	4-5,523-522[SIL];x-x,515-515[BULt];21-21,505-505[UP3]	.(((((((((.((((((..(((&)))..))))))-))))))))).	CGGAGAGAGGCAAAGAACUAGA&UUUUUUUCUUU-CCUUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9519_c0_g2_517_TPlot.pdf
TRINITY_DN9519_c0_g2:518	si_s77	TRINITY_DN9519_c0_g2	506	527	518	-25.50	-18.80	0.737254901960784	8	1-4,527-524;7-12,521-516;13-21,514-506	5-6,523-522[SIL];x-x,515-515[BULt]	(((((((((.((((((..((((&))))..))))))-)))))))))	GGAGAGAGGCAAAGAACUAGAA&UUUUUUUUCUUU-CCUUUCUUC	2	0.999999998716808	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9519_c0_g2_518_TPlot.pdf
TRINITY_DN9519_c0_g2:749	si_s644	TRINITY_DN9519_c0_g2	735	758	749	-37.20	-24.80	0.666666666666667	12.5	2-12,757-747;16-20,740-736	1-1,758-758[UP5];13-15,746-741[AILt];21-21,735-735[UP3]	.(((((......(((((((((((.&.)))))))))))---...))))).	AGGUUGCUAGAGCGAGGGCAGACA&CGUUUGCCCUCG---AUACAAUCG	2	0.652823731903465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s644_TRINITY_DN9519_c0_g2_749_TPlot.pdf
TRINITY_DN951_c0_g1:2853	si_a498	TRINITY_DN951_c0_g1	2841	2870	2853	-33.50	-23.50	0.701492537313433	18.5	1-9,2870-2862;10-15,2853-2848;16-21,2846-2841	x-x,2861-2854[BULt];x-x,2847-2847[BULt]	((((((.((((((........(((((((((&)))))))))--------))))))-))))))	CAAGGGCAGACGAUCAGUGGGAAGACGACA&UGUCGUUUU--------UCGUCU-UCCUUG	2	0.999036512504797	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN951_c0_g1_2853_TPlot.pdf
TRINITY_DN951_c1_g1:53	si_s796	TRINITY_DN951_c1_g1	42	62	53	-30.30	-20.00	0.66006600660066	9	1-5,62-58;7-7,56-56;10-18,53-45	6-6,57-57[SIL];8-9,55-54[SIL];19-21,44-42[UP3]	...(((((((((..(.(((((&))))).)..)))))))))...	GUAGAAGAUAAAUGAGGAGCU&AGCUCGUAUUUUAUCUUCGUU	1	0.161527123285789	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN951_c1_g1_53_TPlot.pdf
TRINITY_DN9524_c0_g1:118	si_a321	TRINITY_DN9524_c0_g1	107	127	118	-26.70	-18.90	0.707865168539326	7.5	3-5,125-123;7-21,121-107	1-2,127-126[UP5];6-6,122-122[SIL]	(((((((((((((((.(((..&..))).)))))))))))))))	GGAAUAAGAAAAUUGAGGAAG&UAUCCAUGAUUUUUUUAUUCC	1	0.0492566749731151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9524_c0_g1_118_TPlot.pdf
TRINITY_DN9524_c0_g1:1412	si_s582	TRINITY_DN9524_c0_g1	1401	1421	1412	-22.50	-14.80	0.657777777777778	12	5-16,1417-1406	1-4,1421-1418[UP5];17-21,1405-1401[UP3]	.....((((((((((((....&....)))))))))))).....	CUGCCUCCAUGAUUUUUAGGA&AUAAAAAAAUCAUGGAUAAAU	4	0.989340662245703	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s582_TRINITY_DN9524_c0_g1_1412_TPlot.pdf
TRINITY_DN9534_c0_g1:1926	si_s439	TRINITY_DN9534_c0_g1	1915	1935	1926	-21.50	-15.50	0.720930232558139	4.5	1-9,1935-1927;11-19,1925-1917	10-10,1926-1926[SIL];20-21,1916-1915[UP3]	..(((((((((.(((((((((&))))))))).)))))))))..	ACUUGUAUAUAUUAUGUAAUU&AAUUACAUAUUAUAUAUAACA	4	0.902955590015115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN9534_c0_g1_1926_TPlot.pdf
TRINITY_DN9537_c0_g1:1091	si_a722	TRINITY_DN9537_c0_g1	1080	1098	1091	-34.70	-24.00	0.69164265129683	8.5	2-6,1097-1093;9-21,1092-1080	1-1,1098-1098[UP5];7-8,x-x[BULq]	(((((((((((((--(((((.&.)))))..)))))))))))))	GGAGAUGCUCGAG--GCGGUC&AAUCGUUACUCGGGCAUCUUU	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a722_TRINITY_DN9537_c0_g1_1091_TPlot.pdf
TRINITY_DN9537_c0_g1:721	si_a446	TRINITY_DN9537_c0_g1	710	730	721	-25.50	-17.50	0.686274509803922	11.5	5-13,726-718;15-19,716-712	1-4,730-727[UP5];14-14,717-717[SIL];20-21,711-710[UP3]	..(((((.(((((((((....&....))))))))).)))))..	CGGACGAGGAUUAUCUCGAAA&AUAUGAGAUAAUUGUUGUUAU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN9537_c0_g1_721_TPlot.pdf
TRINITY_DN9537_c0_g2:714	si_s87	TRINITY_DN9537_c0_g2	703	723	714	-32.90	-23.10	0.702127659574468	11	6-20,718-704	1-5,723-719[UP5];21-21,703-703[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CGGCGGAGAAGAAGAACCCUC&UUCCUUUCUUCUUCUUCGCUU	2	0.999999576202239	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9537_c0_g2_714_TPlot.pdf
TRINITY_DN9537_c0_g2:715	si_s86	TRINITY_DN9537_c0_g2	704	724	715	-32.90	-23.10	0.702127659574468	12	7-21,718-704	1-6,724-719[UP5]	(((((((((((((((......&......)))))))))))))))	GGCGGAGAAGAAGAACCCUCG&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999927433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9537_c0_g2_715_TPlot.pdf
TRINITY_DN9538_c0_g1:5060	si_a326	TRINITY_DN9538_c0_g1	5046	5069	5060	-26.20	-19.00	0.725190839694656	9.5	1-2,5069-5068;4-10,5066-5060;11-21,5056-5046	3-3,5067-5067[SIL];x-x,5059-5057[BULt]	(((((((((((...(((((((.((&)).)))))))---)))))))))))	GACAGGGAAUAUAAAAGAAAUGAU&AUGAUUUUUU---UAUUCCUUGUC	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a326_TRINITY_DN9538_c0_g1_5060_TPlot.pdf
TRINITY_DN9547_c2_g1:1696	si_s1	TRINITY_DN9547_c2_g1	1685	1706	1696	-18.70	-12.90	0.689839572192513	9.5	2-8,1705-1699;10-20,1696-1686	1-1,1706-1706[UP5];9-9,1698-1697[AILt];21-21,1685-1685[UP3]	.(((((((((((..(((((((.&.)))))))-.))))))))))).	AGGUAAUAGGUAUUUGUAAGAU&UUUUUAUA-UUACUUAUUAUUA	4	0.999999458546671	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN9547_c2_g1_1696_TPlot.pdf
TRINITY_DN9548_c0_g1:227	si_s676	TRINITY_DN9548_c0_g1	216	239	227	-27.40	-18.50	0.675182481751825	11.5	2-4,238-236;5-10,232-227;13-21,224-216	1-1,239-239[UP5];x-x,235-233[BULt];11-12,226-225[SIL]	(((((((((..((((((...(((.&.)))---))))))..)))))))))	AAACUCGUGGCUCUAUACGAAUCG&UGAU---UAUAGAAACAUGAGUUU	4	0.62873279014437	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s676_TRINITY_DN9548_c0_g1_227_TPlot.pdf
TRINITY_DN9555_c0_g1:973	si_s817	TRINITY_DN9555_c0_g1	962	983	973	-24.50	-16.40	0.669387755102041	8	2-9,982-975;10-17,973-966	1-1,983-983[UP5];x-x,974-974[BULt];18-21,965-962[UP3]	....((((((((.((((((((.&.))))))))-))))))))....	GAGGCAUUAUUACAGAAAGGGA&ACCUUUUCU-UAAUAAUGAAAA	2	0.930294485745534	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s817_TRINITY_DN9555_c0_g1_973_TPlot.pdf
TRINITY_DN9556_c0_g1:1495	si_a768	TRINITY_DN9556_c0_g1	1483	1504	1495	-28.40	-19.90	0.700704225352113	8	2-16,1503-1489;18-21,1486-1483	1-1,1504-1504[UP5];17-17,1488-1487[AILt]	((((..(((((((((((((((.&.)))))))))))))))-.))))	GGAGAAUGAGUCAGUCGGAAGG&GUUUUUGAUUGAUUCA-ACUCU	2	0.804157692489763	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a768_TRINITY_DN9556_c0_g1_1495_TPlot.pdf
TRINITY_DN9556_c0_g1:3078	si_a632	TRINITY_DN9556_c0_g1	3067	3087	3078	-26.10	-20.70	0.793103448275862	11	6-21,3082-3067	1-5,3087-3083[UP5]	((((((((((((((((.....&.....))))))))))))))))	ACUCGAGAAAAUCGGCCCGAC&AUUAUGUCGAUUUUUUUGAGU	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN9556_c0_g1_3078_TPlot.pdf
TRINITY_DN9557_c0_g1:93	si_s325	TRINITY_DN9557_c0_g1	82	105	93	-28.60	-19.10	0.667832167832168	13.5	1-3,105-103;4-10,99-93;13-19,90-84	x-x,102-100[BULt];11-12,92-91[SIL];20-21,83-82[UP3]	..(((((((..(((((((...(((&)))---)))))))..)))))))..	UUUCGUGUGGUUGUAGCACCAAGA&UCU---UGUUACAAACAUACGAUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s325_TRINITY_DN9557_c0_g1_93_TPlot.pdf
TRINITY_DN9559_c0_g2:1176	si_a458	TRINITY_DN9559_c0_g2	1165	1185	1176	-23.80	-16.10	0.676470588235294	8.5	4-14,1182-1172;16-21,1170-1165	1-3,1185-1183[UP5];15-15,1171-1171[SIL]	((((((.(((((((((((...&...))))))))))).))))))	UGCAUAAUAUGUAUAGCAUUU&UGUUGUUAUAUAUAAUAUGUA	4	0.990385960315007	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN9559_c0_g2_1176_TPlot.pdf
TRINITY_DN955_c0_g1:3891	si_a400	TRINITY_DN955_c0_g1	3880	3900	3891	-22.80	-15.00	0.657894736842105	9.5	1-6,3900-3895;8-18,3893-3883	7-7,3894-3894[SIL];19-21,3882-3880[UP3]	...(((((((((((.((((((&)))))).)))))))))))...	ACCAAGCAGAGCGGGUCUAUG&UAUAGAAUUGUUUUGUUUAUA	4	0.999999999820032	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN955_c0_g1_3891_TPlot.pdf
TRINITY_DN955_c0_g1:4071	si_a310	TRINITY_DN955_c0_g1	4059	4080	4071	-33.70	-25.20	0.747774480712166	9	3-12,4078-4069;13-20,4067-4060	1-2,4080-4079[UP5];x-x,4068-4068[BULt];21-21,4059-4059[UP3]	.((((((((.((((((((((..&..))))))))))-)))))))).	CUCGUGGGUGAGAUCCAGGCCC&UCGCUUGGAUUU-AUCCAUGAU	4	0.31034407317361	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a310_TRINITY_DN955_c0_g1_4071_TPlot.pdf
TRINITY_DN955_c0_g1:4219	si_s375	TRINITY_DN955_c0_g1	4206	4228	4219	-44.10	-28.80	0.653061224489796	9	3-9,4226-4220;11-13,4218-4216;14-21,4213-4206	1-2,4228-4227[UP5];10-10,4219-4219[SIL];x-x,4215-4214[BULt]	((((((((..(((.(((((((..&..))))))).)))--))))))))	GAGGUGGAGUCGCACGAGCGAGG&GAUCGCUCGCGUG--UCCGCCUU	4	0.999994064120275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN955_c0_g1_4219_TPlot.pdf
TRINITY_DN955_c0_g1:5207	si_s798	TRINITY_DN955_c0_g1	5197	5216	5207	-29.30	-19.50	0.665529010238908	9.5	1-10,5216-5207;12-18,5206-5200	11-11,x-x[BULq];19-21,5199-5197[UP3]	...(((((((-((((((((((&)))))))))).)))))))...	GCCGCGGGGA-GAAGUGCGAG&CUCGUAUUUUAUCUUCGUUAC	4	0.999854441088711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN955_c0_g1_5207_TPlot.pdf
TRINITY_DN955_c0_g1:5210	si_s795	TRINITY_DN955_c0_g1	5200	5219	5210	-30.30	-21.30	0.702970297029703	9	3-13,5217-5207;15-21,5206-5200	1-2,5219-5218[UP5];14-14,x-x[BULq]	(((((((-(((((((((((..&..))))))))))).)))))))	GCGGGGA-GAAGUGCGAGUGC&AAGCUCGUAUUUUAUCUUCGU	2	0.904852040389997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN955_c0_g1_5210_TPlot.pdf
TRINITY_DN955_c0_g1:5232	si_a505	TRINITY_DN955_c0_g1	5220	5241	5232	-33.30	-23.90	0.717717717717718	6.5	2-13,5240-5229;14-15,5227-5226;18-21,5223-5220	1-1,5241-5241[UP5];x-x,5228-5228[BULt];16-17,5225-5224[SIL]	((((..((.((((((((((((.&.))))))))))))-))..))))	UGCAAGCCGAAGGAAGGCGAGC&UUUCGUCUUCCUU-GGAAUGUA	3	0.918751162981715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a505_TRINITY_DN955_c0_g1_5232_TPlot.pdf
TRINITY_DN955_c0_g1:6497	si_s75	TRINITY_DN955_c0_g1	6485	6506	6497	-24.00	-16.50	0.6875	8.5	1-14,6506-6493;15-19,6491-6487	x-x,6492-6492[BULt];20-21,6486-6485[UP3]	..(((((.((((((((((((((&))))))))))))))-)))))..	CCAGAGGCAGAGGAAGAGAGUG&UAUUUUUUUUCUUU-CCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN955_c0_g1_6497_TPlot.pdf
TRINITY_DN955_c0_g1:6499	si_s73	TRINITY_DN955_c0_g1	6487	6508	6499	-24.00	-16.70	0.695833333333333	10	3-16,6506-6493;17-21,6491-6487	1-2,6508-6507[UP5];x-x,6492-6492[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	AGAGGCAGAGGAAGAGAGUGUC&UCUAUUUUUUUUCUUU-CCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN955_c0_g1_6499_TPlot.pdf
TRINITY_DN955_c0_g1:6573	si_s448	TRINITY_DN955_c0_g1	6563	6582	6573	-23.00	-15.30	0.665217391304348	3	1-12,6582-6571;14-17,6569-6566;19-21,6565-6563	13-13,6570-6570[SIL];18-18,x-x[BULq]	(((-((((.((((((((((((&)))))))))))).)))).)))	GAU-GUUGAUGUUAUAUAUAG&UUAUAUAUAACAACAAUUAUC	4	0.906880464985911	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s448_TRINITY_DN955_c0_g1_6573_TPlot.pdf
TRINITY_DN955_c0_g1:6575	si_s446	TRINITY_DN955_c0_g1	6564	6584	6575	-21.30	-14.80	0.694835680751174	5.5	2-14,6583-6571;16-19,6569-6566	1-1,6584-6584[UP5];15-15,6570-6570[SIL];20-21,6565-6564[UP3]	..((((.(((((((((((((.&.))))))))))))).))))..	AUGUUGAUGUUAUAUAUAGUU&UAUUAUAUAUAACAACAAUUA	4	0.875677746012977	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s446_TRINITY_DN955_c0_g1_6575_TPlot.pdf
TRINITY_DN955_c0_g1:6577	si_s444	TRINITY_DN955_c0_g1	6566	6585	6577	-22.80	-15.10	0.662280701754386	4.5	1-2,6585-6584;4-16,6583-6571;18-21,6569-6566	3-3,x-x[BULq];17-17,6570-6570[SIL]	((((.(((((((((((((-((&)).))))))))))))).))))	GUUGAUGUUAUAUAUAGU-UG&CAUAUUAUAUAUAACAACAAU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s444_TRINITY_DN955_c0_g1_6577_TPlot.pdf
TRINITY_DN9561_c0_g1:2526	si_s637	TRINITY_DN9561_c0_g1	2510	2535	2526	-40.90	-29.10	0.711491442542787	9	1-13,2535-2523;14-16,2521-2519;17-20,2514-2511	x-x,2522-2522[BULt];x-x,2518-2515[BULt];21-21,2510-2510[UP3]	.((((....(((.(((((((((((((&)))))))))))))-)))----)))).	CUCGAGCCCGGGUCGAAUGCCUGCGA&UCGUAGGCGUUUG-CCC----UCGAU	4	0.685248583497861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s637_TRINITY_DN9561_c0_g1_2526_TPlot.pdf
TRINITY_DN9561_c0_g1:457	si_s797	TRINITY_DN9561_c0_g1	443	466	457	-30.00	-20.30	0.676666666666667	12	1-12,466-455;13-18,451-446	x-x,454-452[BULt];19-21,445-443[UP3]	...((((((...((((((((((((&))))))))))))---))))))...	CACCGAGGACUUUGGAAUACGAGU&GCUCGUAUUUUA---UCUUCGUUA	3	0.999991714070254	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN9561_c0_g1_457_TPlot.pdf
TRINITY_DN9561_c0_g1:459	si_s795	TRINITY_DN9561_c0_g1	445	468	459	-30.30	-20.50	0.676567656765677	10	3-14,466-455;15-20,451-446	1-2,468-467[UP5];x-x,454-452[BULt];21-21,445-445[UP3]	.((((((...((((((((((((..&..))))))))))))---)))))).	CCGAGGACUUUGGAAUACGAGUCG&AAGCUCGUAUUUUA---UCUUCGU	2	0.992105207356984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN9561_c0_g1_459_TPlot.pdf
TRINITY_DN9561_c0_g1:721	si_s218	TRINITY_DN9561_c0_g1	710	730	721	-35.50	-24.50	0.690140845070423	10.5	1-6,730-725;9-17,722-714	7-8,724-723[SIL];18-21,713-710[UP3]	....(((((((((..((((((&))))))..)))))))))....	GAUCCACGUGGUUGGGAGCGC&GUGUUCGAAACCGCGUGAAUA	3	0.684595734499182	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN9561_c0_g1_721_TPlot.pdf
TRINITY_DN9561_c0_g1:724	si_s215	TRINITY_DN9561_c0_g1	713	733	724	-37.40	-26.10	0.697860962566845	9.5	2-9,732-725;12-20,722-714	1-1,733-733[UP5];10-11,724-723[SIL];21-21,713-713[UP3]	.(((((((((..((((((((.&.))))))))..))))))))).	CCACGUGGUUGGGAGCGCGAA&GUUGUGUUCGAAACCGCGUGA	2	0.469933914439954	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s215_TRINITY_DN9561_c0_g1_724_TPlot.pdf
TRINITY_DN9561_c0_g1:729	si_a602	TRINITY_DN9561_c0_g1	718	738	729	-30.80	-21.30	0.691558441558442	8.5	1-4,738-735;6-10,733-729;13-21,726-718	5-5,734-734[SIL];11-12,728-727[SIL]	(((((((((..(((((.((((&)))).)))))..)))))))))	UGGUUGGGAGCGCGAAUGUUC&GAAUUUUCGCAAUUCCAAUCG	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a602_TRINITY_DN9561_c0_g1_729_TPlot.pdf
TRINITY_DN9561_c0_g1:776	si_a302	TRINITY_DN9561_c0_g1	765	785	776	-28.20	-18.40	0.652482269503546	7.5	3-13,783-773;15-20,771-766	1-2,785-784[UP5];14-14,772-772[SIL];21-21,765-765[UP3]	.((((((.(((((((((((..&..))))))))))).)))))).	GAGAUUCCGGUGAAUCUUUGC&AAAAAGAUUCGCUUGGAUUUA	3	0.999998547063307	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a302_TRINITY_DN9561_c0_g1_776_TPlot.pdf
TRINITY_DN9562_c0_g1:826	si_a25	TRINITY_DN9562_c0_g1	824	835	826	-26.50	-17.50	0.660377358490566	3	11-21,834-824	10-10,835-835[SIL]	(((((((((((.&.)))))))))))	GGUCUUAGGACA&UUUAUUUUUAGU	4	0.999518051280664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN9562_c0_g1_826_TPlot.pdf
TRINITY_DN9562_c0_g1:961	si_s41	TRINITY_DN9562_c0_g1	950	971	961	-25.00	-19.60	0.784	8	1-3,971-969;5-20,966-951	4-4,968-967[AILt];21-21,950-950[UP3]	.((((((((((((((((..(((&)))-.)))))))))))))))).	GGAAAUCCAAUUGUUGAUUGGU&AUC-UUUAAUAAUUGGAUUUCA	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s41_TRINITY_DN9562_c0_g1_961_TPlot.pdf
TRINITY_DN9562_c0_g1:962	si_s40	TRINITY_DN9562_c0_g1	951	972	962	-24.30	-20.40	0.839506172839506	7	1-4,972-969;6-21,966-951	5-5,968-967[AILt]	((((((((((((((((..((((&))))-.))))))))))))))))	GAAAUCCAAUUGUUGAUUGGUU&AAUC-UUUAAUAAUUGGAUUUC	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s40_TRINITY_DN9562_c0_g1_962_TPlot.pdf
TRINITY_DN9563_c0_g1:465	si_a712	TRINITY_DN9563_c0_g1	454	475	465	-28.20	-20.10	0.712765957446809	6.5	1-6,475-470;8-10,467-465;12-21,463-454	7-7,469-468[AILt];11-11,464-464[SIL]	((((((((((.(((..((((((&))))))-.))).))))))))))	GAGUAGCGAUAAUUAAUGGAAU&AUUCCA-AAAUAAUCGUUACUC	4	0.438972891473024	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a712_TRINITY_DN9563_c0_g1_465_TPlot.pdf
TRINITY_DN9564_c0_g1:2519	si_a813	TRINITY_DN9564_c0_g1	2508	2529	2519	-32.90	-22.00	0.668693009118541	7	1-4,2529-2526;5-9,2524-2520;11-19,2518-2510	x-x,2525-2525[BULt];10-10,2519-2519[SIL];20-21,2509-2508[UP3]	..(((((((((.(((((.((((&))))-))))).)))))))))..	AGCCUUUCUUCCUCUUUGGCUU&AAGC-GAAGAAGAAGAAAGGAA	3	0.980698122476411	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a813_TRINITY_DN9564_c0_g1_2519_TPlot.pdf
TRINITY_DN9564_c2_g1:286	si_s316	TRINITY_DN9564_c2_g1	275	295	286	-31.50	-21.70	0.688888888888889	6	1-13,295-283;15-15,281-281;18-19,278-277	14-14,282-282[SIL];16-17,280-279[SIL];20-21,276-275[UP3]	..((..(.(((((((((((((&))))))))))))).)..))..	GAUGGCAGAAGAAGGACGGAA&UUCUGUCCUUCUUGUUACAAA	4	0.998530723907236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s316_TRINITY_DN9564_c2_g1_286_TPlot.pdf
TRINITY_DN956_c0_g2:351	si_s312	TRINITY_DN956_c0_g2	340	362	351	-29.00	-19.60	0.675862068965517	15	6-9,357-354;10-20,351-341	1-5,362-358[UP5];x-x,353-352[BULt];21-21,340-340[UP3]	.(((((((((((..((((.....&.....))))--))))))))))).	AGACAGGAAGGAAACAGAGAGGC&AAAAUUCUG--UCCUUCUUGUUA	3	0.999999981667634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN956_c0_g2_351_TPlot.pdf
TRINITY_DN9570_c0_g1:1639	si_s482	TRINITY_DN9570_c0_g1	1628	1648	1639	-21.20	-13.80	0.650943396226415	8.5	2-12,1647-1637;14-18,1635-1631	1-1,1648-1648[UP5];13-13,1636-1636[SIL];19-21,1630-1628[UP3]	...(((((.(((((((((((.&.))))))))))).)))))...	UUUUUUAGCUGAGUAUGGGAA&AUCCUAUAUUUAUUUAAAUAU	3	0.999995004875491	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s482_TRINITY_DN9570_c0_g1_1639_TPlot.pdf
TRINITY_DN9583_c1_g1:190	si_a635	TRINITY_DN9583_c1_g1	179	201	190	-26.10	-17.10	0.655172413793103	12	2-5,200-197;6-19,194-181	1-1,201-201[UP5];x-x,196-195[BULt];20-21,180-179[UP3]	..((((((((((((((..((((.&.))))--))))))))))))))..	CGUGCUCGAGAAGAUUAUGGCAA&AUGUC--GAUUUUUUUGAGUAAU	4	0.999999999999647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN9583_c1_g1_190_TPlot.pdf
TRINITY_DN9585_c0_g1:205	si_a480	TRINITY_DN9585_c0_g1	194	214	205	-23.70	-15.58	0.657383966244726	5.5	1-14,214-201;18-21,197-194	15-17,200-198[SIL]	((((...((((((((((((((&))))))))))))))...))))	ACGUUAGCUAUAUAAUAGUAA&UUAUUGUUAUAUAGAAUAUGU	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a480_TRINITY_DN9585_c0_g1_205_TPlot.pdf
TRINITY_DN9585_c0_g2:381	si_a191	TRINITY_DN9585_c0_g2	370	390	381	-32.00	-25.00	0.78125	9	4-18,387-373	1-3,390-388[UP5];19-21,372-370[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCGUAGUGAACAGGGAGAACU&AUCUUUCCCUGUUCACUAAUA	4	0.351756926553521	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a191_TRINITY_DN9585_c0_g2_381_TPlot.pdf
TRINITY_DN9585_c0_g3:1891	si_a194	TRINITY_DN9585_c0_g3	1880	1900	1891	-29.40	-24.80	0.843537414965986	7	1-15,1900-1886	16-21,1885-1880[UP3]	......(((((((((((((((&)))))))))))))))......	UGGUCGUAGUGAACAGGGAGA&UUUCCCUGUUCACUAAUAAAU	4	0.0792524974958939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a194_TRINITY_DN9585_c0_g3_1891_TPlot.pdf
TRINITY_DN9586_c0_g1:238	si_a444	TRINITY_DN9586_c0_g1	228	247	238	-29.30	-19.90	0.679180887372014	7.5	1-6,247-242;8-10,240-238;12-21,237-228	7-7,241-241[SIL];11-11,x-x[BULq]	((((((((((-(((.((((((&)))))).))).))))))))))	GACAGCGAUU-UUUGGUAUCC&GGAUAUGAGAUAAUUGUUGUU	4	0.973564703924613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a444_TRINITY_DN9586_c0_g1_238_TPlot.pdf
TRINITY_DN9587_c0_g1:1584	si_s384	TRINITY_DN9587_c0_g1	1572	1605	1584	-38.50	-25.20	0.654545454545455	25.5	1-8,1605-1598;9-18,1585-1576;19-21,1574-1572	x-x,1597-1586[BULt];x-x,1575-1575[BULt]	(((.((((((((((............((((((((&))))))))------------))))))))))-)))	UUGUGGAUGUAAGGGAUAUUGUGAUCCGGACACG&CGUGUCCG------------CCUUACAUUC-CAA	3	0.989901379622198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s384_TRINITY_DN9587_c0_g1_1584_TPlot.pdf
TRINITY_DN9587_c0_g1:1599	si_s381	TRINITY_DN9587_c0_g1	1576	1608	1599	-40.30	-27.30	0.67741935483871	26.5	2-11,1607-1598;12-21,1585-1576	1-1,1608-1608[UP5];x-x,1597-1586[BULt]	((((((((((............((((((((((.&.))))))))))------------))))))))))	GGAUGUAAGGGAUAUUGUGAUCCGGACACGUGU&UCGCGUGUCCG------------CCUUACAUUC	4	0.864976821931191	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s381_TRINITY_DN9587_c0_g1_1599_TPlot.pdf
TRINITY_DN9587_c0_g1:1675	si_s459	TRINITY_DN9587_c0_g1	1660	1684	1675	-29.30	-19.60	0.668941979522184	12.5	2-12,1683-1673;13-18,1668-1663	1-1,1684-1684[UP5];x-x,1672-1669[BULt];19-21,1662-1660[UP3]	...((((((....(((((((((((.&.)))))))))))----))))))...	UGCGGAUGUUCGAGAGAUAAUUGUG&AACAAUUAUCUC----AUAUCCAAC	2	0.611672922527595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s459_TRINITY_DN9587_c0_g1_1675_TPlot.pdf
TRINITY_DN9587_c0_g1:1676	si_s458	TRINITY_DN9587_c0_g1	1661	1685	1676	-29.30	-19.60	0.668941979522184	9.5	3-13,1683-1673;14-19,1668-1663	1-2,1685-1684[UP5];x-x,1672-1669[BULt];20-21,1662-1661[UP3]	..((((((....(((((((((((..&..)))))))))))----))))))..	GCGGAUGUUCGAGAGAUAAUUGUGG&CAACAAUUAUCUC----AUAUCCAA	2	0.639615659415402	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s458_TRINITY_DN9587_c0_g1_1676_TPlot.pdf
TRINITY_DN9587_c0_g1:1677	si_s457	TRINITY_DN9587_c0_g1	1662	1686	1677	-30.00	-19.60	0.653333333333333	10.5	4-14,1683-1673;15-20,1668-1663	1-3,1686-1684[UP5];x-x,1672-1669[BULt];21-21,1662-1662[UP3]	.((((((....(((((((((((...&...)))))))))))----)))))).	CGGAUGUUCGAGAGAUAAUUGUGGA&ACAACAAUUAUCUC----AUAUCCA	2	0.669684574476033	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s457_TRINITY_DN9587_c0_g1_1677_TPlot.pdf
TRINITY_DN9587_c0_g1:1678	si_s456	TRINITY_DN9587_c0_g1	1663	1687	1678	-29.30	-19.20	0.655290102389078	11.5	5-15,1683-1673;16-21,1668-1663	1-4,1687-1684[UP5];x-x,1672-1669[BULt]	((((((....(((((((((((....&....)))))))))))----))))))	GGAUGUUCGAGAGAUAAUUGUGGAA&AACAACAAUUAUCUC----AUAUCC	2	0.644073259038664	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s456_TRINITY_DN9587_c0_g1_1678_TPlot.pdf
TRINITY_DN9587_c1_g2:2062	si_s874	TRINITY_DN9587_c1_g2	2048	2071	2062	-28.00	-19.50	0.696428571428571	5.5	2-13,2070-2059;14-21,2055-2048	1-1,2071-2071[UP5];x-x,2058-2056[BULt]	((((((((...((((((((((((.&.))))))))))))---))))))))	UUAUUUUUUGGGGUUUUAAGACCU&CGGUCUUAGAACU---AAAAAUAA	4	0.605014473425958	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s874_TRINITY_DN9587_c1_g2_2062_TPlot.pdf
TRINITY_DN9589_c0_g1:397	si_s66	TRINITY_DN9589_c0_g1	386	407	397	-26.30	-18.40	0.699619771863118	6	2-5,406-403;7-21,400-386	1-1,407-407[UP5];6-6,402-401[AILt]	(((((((((((((((..((((.&.))))-.)))))))))))))))	AGAAAAAAAGUAGAAUUUUGCC&AGCAA-CUUCUAUUUUUUUUCU	4	0.99983181284008	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN9589_c0_g1_397_TPlot.pdf
TRINITY_DN9589_c0_g1:398	si_s65	TRINITY_DN9589_c0_g1	387	408	398	-26.00	-17.10	0.657692307692308	7.5	3-6,406-403;8-21,400-387	1-2,408-407[UP5];7-7,402-401[AILt]	((((((((((((((..((((..&..))))-.))))))))))))))	GAAAAAAAGUAGAAUUUUGCCA&UAGCAA-CUUCUAUUUUUUUUC	4	0.999999987865376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN9589_c0_g1_398_TPlot.pdf
TRINITY_DN9593_c1_g1:3067	si_a453	TRINITY_DN9593_c1_g1	3056	3076	3067	-21.10	-15.30	0.725118483412322	4	2-12,3075-3065;14-19,3063-3058	1-1,3076-3076[UP5];13-13,3064-3064[SIL];20-21,3057-3056[UP3]	..((((((.(((((((((((.&.))))))))))).))))))..	AAUAUAUAAAACAACAAUUAG&AUAAUUGUUGUUAUAUAUAAU	3	0.987635401511108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN9593_c1_g1_3067_TPlot.pdf
TRINITY_DN959_c0_g1:1481	si_s74	TRINITY_DN959_c0_g1	1469	1490	1481	-25.00	-16.40	0.656	11	5-13,1486-1478;14-21,1476-1469	1-4,1490-1487[UP5];x-x,1477-1477[BULt]	((((((((.(((((((((....&....)))))))))-))))))))	GAAAGGGGCAGAGAAGAAUACG&CUAUUUUUUUUCU-UUCCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN959_c0_g1_1481_TPlot.pdf
TRINITY_DN959_c0_g1:1633	si_a148	TRINITY_DN959_c0_g1	1617	1642	1633	-30.30	-21.50	0.70957095709571	14.5	1-12,1642-1631;13-19,1625-1619	x-x,1630-1626[BULt];20-21,1618-1617[UP3]	..(((((((.....((((((((((((&))))))))))))-----)))))))..	AAGACUUUAAAGAGGAACAACGACGA&UCGUUGUUGUUU-----UAAGGUCAA	3	0.977304804260012	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN959_c0_g1_1633_TPlot.pdf
TRINITY_DN959_c0_g1:1634	si_a147	TRINITY_DN959_c0_g1	1618	1643	1634	-30.40	-21.50	0.707236842105263	9	2-13,1642-1631;14-20,1625-1619	1-1,1643-1643[UP5];x-x,1630-1626[BULt];21-21,1618-1618[UP3]	.(((((((.....((((((((((((.&.))))))))))))-----))))))).	AGACUUUAAAGAGGAACAACGACGAG&AUCGUUGUUGUUU-----UAAGGUCA	3	0.988597165274484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a147_TRINITY_DN959_c0_g1_1634_TPlot.pdf
TRINITY_DN959_c0_g1:1811	si_a331	TRINITY_DN959_c0_g1	1799	1820	1811	-30.60	-20.10	0.656862745098039	15.5	7-11,1814-1810;12-20,1808-1800	1-6,1820-1815[UP5];x-x,1809-1809[BULt];21-21,1799-1799[UP3]	.(((((((((.(((((......&......)))))-))))))))).	AUCGGGACGGUGGAAUCAAUUG&UUUUUUAUUCC-UUGUCCCGAA	4	0.999999762880908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a331_TRINITY_DN959_c0_g1_1811_TPlot.pdf
TRINITY_DN959_c0_g1:1812	si_a330	TRINITY_DN959_c0_g1	1800	1821	1812	-30.50	-19.90	0.652459016393443	16	8-12,1814-1810;13-21,1808-1800	1-7,1821-1815[UP5];x-x,1809-1809[BULt]	(((((((((.(((((.......&.......)))))-)))))))))	UCGGGACGGUGGAAUCAAUUGA&UUUUUUUAUUCC-UUGUCCCGA	4	0.999999984130271	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN959_c0_g1_1812_TPlot.pdf
TRINITY_DN959_c0_g1:3553	si_s527	TRINITY_DN959_c0_g1	3543	3562	3553	-28.00	-22.30	0.796428571428571	4.5	1-12,3562-3551;15-21,3549-3543	13-14,3550-3550[AILq]	(((((((.-((((((((((((&))))))))))))..)))))))	GGAUCAGU-AUGAUUUCGGGU&AUUCGAAAUCAUUUUUGAUCC	3	0.132124517039971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s527_TRINITY_DN959_c0_g1_3553_TPlot.pdf
TRINITY_DN959_c0_g1:3556	si_s524	TRINITY_DN959_c0_g1	3546	3565	3556	-23.90	-16.90	0.707112970711297	6.5	2-15,3564-3551;18-21,3549-3546	1-1,3565-3565[UP5];16-17,3550-3550[AILq]	((((.-((((((((((((((.&.))))))))))))))..))))	UCAGU-AUGAUUUCGGGUUGC&UUAAUUCGAAAUCAUUUUUGA	3	0.911898289188346	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s524_TRINITY_DN959_c0_g1_3556_TPlot.pdf
TRINITY_DN959_c0_g1:3660	si_s375	TRINITY_DN959_c0_g1	3647	3669	3660	-44.10	-28.88	0.654875283446712	12.5	1-8,3669-3662;10-11,3660-3659;14-19,3654-3649	9-9,3661-3661[SIL];12-13,3658-3655[AILt];20-21,3648-3647[UP3]	..((((((....((.((((((((&)))))))).))--..))))))..	GUGGCGGGAUGCCGGGGGCGAUC&GAUCGCUCGCG--UGUCCGCCUU	3	0.999986255271187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN959_c0_g1_3660_TPlot.pdf
TRINITY_DN959_c0_g1:3736	si_s313	TRINITY_DN959_c0_g1	3725	3745	3736	-30.80	-20.20	0.655844155844156	14.5	7-19,3739-3727	1-6,3745-3740[UP5];20-21,3726-3725[UP3]	..(((((((((((((......&......)))))))))))))..	CGGACGAGGAGGACAACGGCG&AAAUUCUGUCCUUCUUGUUAC	4	0.999999980491757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s313_TRINITY_DN959_c0_g1_3736_TPlot.pdf
TRINITY_DN959_c0_g1:3737	si_s312	TRINITY_DN959_c0_g1	3726	3746	3737	-29.00	-20.20	0.696551724137931	15.5	8-20,3739-3727	1-7,3746-3740[UP5];21-21,3726-3726[UP3]	.(((((((((((((.......&.......))))))))))))).	GGACGAGGAGGACAACGGCGG&AAAAUUCUGUCCUUCUUGUUA	3	0.999963680284432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN959_c0_g1_3737_TPlot.pdf
TRINITY_DN959_c0_g1:3774	si_a500	TRINITY_DN959_c0_g1	3763	3783	3774	-34.40	-25.50	0.741279069767442	6.5	1-16,3783-3768;18-19,3766-3765	17-17,3767-3767[SIL];20-21,3764-3763[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	GACGUGGAGGACGAAGAGCGG&UCGUUUUUCGUCUUCCUUGGA	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN959_c0_g1_3774_TPlot.pdf
TRINITY_DN959_c0_g1:3779	si_a495	TRINITY_DN959_c0_g1	3768	3788	3779	-31.90	-24.40	0.764890282131661	12.5	6-21,3783-3768	1-5,3788-3784[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGAGGACGAAGAGCGGUCUCU&AUAUGUCGUUUUUCGUCUUCC	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN959_c0_g1_3779_TPlot.pdf
TRINITY_DN959_c0_g1:3818	si_s89	TRINITY_DN959_c0_g1	3805	3827	3818	-35.30	-26.90	0.762039660056657	8	2-12,3826-3816;13-21,3813-3805	1-1,3827-3827[UP5];x-x,3815-3814[BULt]	(((((((((..(((((((((((.&.)))))))))))--)))))))))	CGGAGCGGAGUGAAGAGGGAAGU&CCUUUCUUCUUC--UUCGCUUCG	4	0.968167705619626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN959_c0_g1_3818_TPlot.pdf
TRINITY_DN959_c0_g1:4812	si_s897	TRINITY_DN959_c0_g1	4801	4823	4812	-31.30	-21.90	0.699680511182109	9	3-7,4821-4817;8-21,4814-4801	1-2,4823-4822[UP5];x-x,4816-4815[BULt]	((((((((((((((..(((((..&..)))))--))))))))))))))	UUGGAGUUGAAGAGUCAAGGCAA&AGGCUUU--CUCUUCAAUUUCAA	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s897_TRINITY_DN959_c0_g1_4812_TPlot.pdf
TRINITY_DN959_c0_g1:4813	si_s896	TRINITY_DN959_c0_g1	4802	4824	4813	-31.60	-21.00	0.664556962025316	11	4-8,4821-4817;9-21,4814-4802	1-3,4824-4822[UP5];x-x,4816-4815[BULt]	(((((((((((((..(((((...&...)))))--)))))))))))))	UGGAGUUGAAGAGUCAAGGCAAC&UAGGCUUU--CUCUUCAAUUUCA	2	0.999200595339094	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s896_TRINITY_DN959_c0_g1_4813_TPlot.pdf
TRINITY_DN959_c0_g1:4847	si_a222	TRINITY_DN959_c0_g1	4836	4856	4847	-25.20	-16.40	0.650793650793651	14.5	6-16,4851-4841	1-5,4856-4852[UP5];17-21,4840-4836[UP3]	.....(((((((((((.....&.....))))))))))).....	AGCCGGGAAACAUGAGGAAGC&UUAAACUCAUGUUUCUAUAAU	2	0.994287804141701	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN959_c0_g1_4847_TPlot.pdf
TRINITY_DN959_c0_g1:4848	si_a221	TRINITY_DN959_c0_g1	4837	4857	4848	-25.20	-16.40	0.650793650793651	15.5	7-17,4851-4841	1-6,4857-4852[UP5];18-21,4840-4837[UP3]	....(((((((((((......&......)))))))))))....	GCCGGGAAACAUGAGGAAGCG&AUUAAACUCAUGUUUCUAUAA	3	0.999604110026651	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a221_TRINITY_DN959_c0_g1_4848_TPlot.pdf
TRINITY_DN959_c0_g1:5190	si_s74	TRINITY_DN959_c0_g1	5178	5200	5190	-25.00	-16.60	0.664	8	1-5,5200-5196;6-16,5194-5184;17-20,5182-5179	x-x,5195-5195[BULt];x-x,5183-5183[BULt];21-21,5178-5178[UP3]	.((((.(((((((((((.(((((&)))))-)))))))))))-)))).	AAAAGAGAAAGAAGAGAUGAUGG&CUAUU-UUUUUUCUUUC-CUUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN959_c0_g1_5190_TPlot.pdf
TRINITY_DN959_c0_g1:5191	si_s73	TRINITY_DN959_c0_g1	5179	5201	5191	-24.00	-16.80	0.7	7.5	1-6,5201-5196;7-17,5194-5184;18-21,5182-5179	x-x,5195-5195[BULt];x-x,5183-5183[BULt]	((((.(((((((((((.((((((&))))))-)))))))))))-))))	AAAGAGAAAGAAGAGAUGAUGGG&UCUAUU-UUUUUUCUUUC-CUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN959_c0_g1_5191_TPlot.pdf
TRINITY_DN959_c0_g1:5192	si_s72	TRINITY_DN959_c0_g1	5180	5202	5192	-24.10	-16.30	0.676348547717842	9	2-7,5201-5196;8-18,5194-5184;19-21,5182-5180	1-1,5202-5202[UP5];x-x,5195-5195[BULt];x-x,5183-5183[BULt]	(((.(((((((((((.((((((.&.))))))-)))))))))))-)))	AAGAGAAAGAAGAGAUGAUGGGG&UUCUAUU-UUUUUUCUUUC-CUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN959_c0_g1_5192_TPlot.pdf
TRINITY_DN95_c0_g1:2500	si_a72	TRINITY_DN95_c0_g1	2489	2509	2500	-21.90	-14.40	0.657534246575343	8	2-10,2508-2500;12-17,2498-2493	1-1,2509-2509[UP5];11-11,2499-2499[SIL];18-21,2492-2489[UP3]	....((((((.(((((((((.&.))))))))).))))))....	CUUUUGAAAAUCAGUUUGAAG&UUUCAAAUUGUUUUUCAUUAU	4	0.999999999999967	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN95_c0_g1_2500_TPlot.pdf
TRINITY_DN95_c0_g1:2893	si_a476	TRINITY_DN95_c0_g1	2882	2902	2893	-22.90	-15.50	0.676855895196507	9.5	1-13,2902-2890;16-18,2887-2885	14-15,2889-2888[SIL];19-21,2884-2882[UP3]	...(((..(((((((((((((&)))))))))))))..)))...	AAACUGGUUAACAGUGGUUGC&GUAAUUAUUGUUAUAUAGAAU	4	0.997733448835863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a476_TRINITY_DN95_c0_g1_2893_TPlot.pdf
TRINITY_DN95_c0_g1:2894	si_a475	TRINITY_DN95_c0_g1	2883	2903	2894	-23.50	-15.50	0.659574468085106	9.5	2-14,2902-2890;17-19,2887-2885	1-1,2903-2903[UP5];15-16,2889-2888[SIL];20-21,2884-2883[UP3]	..(((..(((((((((((((.&.)))))))))))))..)))..	AACUGGUUAACAGUGGUUGCC&UGUAAUUAUUGUUAUAUAGAA	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a475_TRINITY_DN95_c0_g1_2894_TPlot.pdf
TRINITY_DN9602_c0_g1:1199	si_a460	TRINITY_DN9602_c0_g1	1187	1208	1199	-21.60	-16.40	0.759259259259259	6.5	2-15,1207-1194;16-19,1192-1189	1-1,1208-1208[UP5];x-x,1193-1193[BULt];20-21,1188-1187[UP3]	..((((.((((((((((((((.&.))))))))))))))-))))..	UAUGCAGUAUUGUAUAUAGCAU&UUGUUAUAUAUAAUA-UGUAAU	4	0.671982194694859	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN9602_c0_g1_1199_TPlot.pdf
TRINITY_DN9602_c0_g1:905	si_s74	TRINITY_DN9602_c0_g1	893	914	905	-25.00	-17.30	0.692	9.5	4-16,911-899;17-21,897-893	1-3,914-912[UP5];x-x,898-898[BULt]	(((((.(((((((((((((...&...)))))))))))))-)))))	GAAAGAGGAAGAAGAGGAAGAU&CUAUUUUUUUUCUUUC-CUUUC	2	0.999999999993198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9602_c0_g1_905_TPlot.pdf
TRINITY_DN9606_c0_g1:621	si_s72	TRINITY_DN9606_c0_g1	610	631	621	-24.10	-18.30	0.759336099585062	9	1-4,631-628;6-19,625-612	5-5,627-626[AILt];20-21,611-610[UP3]	..((((((((((((((..((((&))))-.))))))))))))))..	AUGGAGAGGAAGAAGAAGAGAA&UUCU-AUUUUUUUUCUUUCCUU	4	0.99999990634139	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9606_c0_g1_621_TPlot.pdf
TRINITY_DN9607_c0_g1:634	si_a784	TRINITY_DN9607_c0_g1	622	643	634	-24.70	-18.00	0.728744939271255	8	2-12,642-632;13-18,630-625	1-1,643-643[UP5];x-x,631-631[BULt];19-21,624-622[UP3]	...((((((.(((((((((((.&.)))))))))))-))))))...	AACAUAGAACAGAUGGAAGAGA&ACUCUUCUAUUU-UUCUAUUUU	3	0.999985095982078	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9607_c0_g1_634_TPlot.pdf
TRINITY_DN9607_c0_g1:635	si_a783	TRINITY_DN9607_c0_g1	623	644	635	-24.70	-18.00	0.728744939271255	8	3-13,642-632;14-19,630-625	1-2,644-643[UP5];x-x,631-631[BULt];20-21,624-623[UP3]	..((((((.(((((((((((..&..)))))))))))-))))))..	ACAUAGAACAGAUGGAAGAGAU&AACUCUUCUAUUU-UUCUAUUU	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9607_c0_g1_635_TPlot.pdf
TRINITY_DN960_c0_g1:418	si_a68	TRINITY_DN960_c0_g1	407	432	418	-25.40	-17.18	0.676377952755906	19.5	1-9,432-424;13-20,415-408	10-12,423-416[AILt];21-21,407-407[UP3]	.((((((((........(((((((((&)))))))))-----...)))))))).	AGAAAGACAUGAAGCAGUGGGAGAAG&CUUCUUUCA-----AAUUGUUUUUCA	2	0.999998089270526	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN960_c0_g1_418_TPlot.pdf
TRINITY_DN9614_c0_g1:136	si_s479	TRINITY_DN9614_c0_g1	125	145	136	-26.40	-19.10	0.723484848484849	8	1-10,145-136;12-18,134-128	11-11,135-135[SIL];19-21,127-125[UP3]	...(((((((.((((((((((&)))))))))).)))))))...	CUGGAAUAGAAGUAGGAUCUG&CGGAUCCUAUAUUUAUUUAAA	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s479_TRINITY_DN9614_c0_g1_136_TPlot.pdf
TRINITY_DN9614_c0_g1:3432	si_a811	TRINITY_DN9614_c0_g1	3421	3441	3432	-35.30	-23.20	0.657223796033994	10	5-18,3437-3424	1-4,3441-3438[UP5];19-21,3423-3421[UP3]	...((((((((((((((....&....))))))))))))))...	UUCUUCUUCUUCUUCGCAUGA&CGAAGCGAAGAAGAAGAAAGG	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a811_TRINITY_DN9614_c0_g1_3432_TPlot.pdf
TRINITY_DN9614_c0_g1:94	si_a410	TRINITY_DN9614_c0_g1	83	103	94	-17.80	-11.70	0.657303370786517	11	2-15,102-89	1-1,103-103[UP5];16-21,88-83[UP3]	......((((((((((((((.&.))))))))))))))......	UCGGGGUAAAUGUGAACGAGC&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9614_c0_g1_94_TPlot.pdf
TRINITY_DN9615_c0_g1:1086	si_s601	TRINITY_DN9615_c0_g1	1075	1095	1086	-28.30	-19.40	0.685512367491166	9	2-14,1094-1082	1-1,1095-1095[UP5];15-21,1081-1075[UP3]	.......(((((((((((((.&.))))))))))))).......	UUAUCUUAGAUUUGCUUGGAC&AUCCAAGCGAAUCUUUUUUAA	4	0.961668862621053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s601_TRINITY_DN9615_c0_g1_1086_TPlot.pdf
TRINITY_DN9615_c0_g1:1087	si_s600	TRINITY_DN9615_c0_g1	1076	1096	1087	-28.20	-19.40	0.687943262411348	10	3-15,1094-1082	1-2,1096-1095[UP5];16-21,1081-1076[UP3]	......(((((((((((((..&..)))))))))))))......	UAUCUUAGAUUUGCUUGGACU&AAUCCAAGCGAAUCUUUUUUA	4	0.956614872134652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN9615_c0_g1_1087_TPlot.pdf
TRINITY_DN9617_c0_g1:1103	si_a66	TRINITY_DN9617_c0_g1	1092	1112	1103	-26.70	-18.90	0.707865168539326	8.5	1-10,1112-1103;13-19,1100-1094	11-12,1102-1101[SIL];20-21,1093-1092[UP3]	..(((((((..((((((((((&))))))))))..)))))))..	GCAGACAAUAAGAAAGAGGUG&CGCUUCUUUCAAAUUGUUUUU	2	0.998472989752493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN9617_c0_g1_1103_TPlot.pdf
TRINITY_DN9617_c0_g1:1104	si_a65	TRINITY_DN9617_c0_g1	1093	1113	1104	-27.70	-19.00	0.685920577617328	7.5	2-11,1112-1103;14-20,1100-1094	1-1,1113-1113[UP5];12-13,1102-1101[SIL];21-21,1093-1093[UP3]	.(((((((..((((((((((.&.))))))))))..))))))).	CAGACAAUAAGAAAGAGGUGG&UCGCUUCUUUCAAAUUGUUUU	3	0.999982117446275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a65_TRINITY_DN9617_c0_g1_1104_TPlot.pdf
TRINITY_DN9617_c0_g1:1302	si_s74	TRINITY_DN9617_c0_g1	1290	1314	1302	-25.00	-18.60	0.744	11.5	1-9,1314-1306;10-11,1302-1301;12-21,1299-1290	x-x,1305-1303[BULt];x-x,1300-1300[BULt]	((((((((((.((...(((((((((&)))))))))---))-))))))))))	GAGAGGAAAGCAAUACGAGAAAUGG&CUAUUUUUU---UU-CUUUCCUUUC	2	0.99988672461266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9617_c0_g1_1302_TPlot.pdf
TRINITY_DN9617_c0_g1:579	si_s75	TRINITY_DN9617_c0_g1	569	588	579	-24.00	-15.70	0.654166666666667	5.5	1-13,588-576;15-19,575-571	14-14,x-x[BULq];20-21,570-569[UP3]	..(((((-(((((((((((((&))))))))))))).)))))..	AAAAAGG-AAGAGAGAAAAUG&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9617_c0_g1_579_TPlot.pdf
TRINITY_DN9617_c0_g1:582	si_s74	TRINITY_DN9617_c0_g1	570	592	582	-25.00	-16.90	0.676	6.5	1-5,592-588;6-15,586-577;16-20,575-571	x-x,587-587[BULt];x-x,576-576[BULt];21-21,570-570[UP3]	.(((((.((((((((((.(((((&)))))-))))))))))-))))).	AAAAGGAAGAGAGAAAAUGAUAG&CUAUU-UUUUUUCUUU-CCUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9617_c0_g1_582_TPlot.pdf
TRINITY_DN9617_c0_g1:583	si_s73	TRINITY_DN9617_c0_g1	571	593	583	-24.00	-17.00	0.708333333333333	6.5	2-6,592-588;7-16,586-577;17-21,575-571	1-1,593-593[UP5];x-x,587-587[BULt];x-x,576-576[BULt]	(((((.((((((((((.(((((.&.)))))-))))))))))-)))))	AAAGGAAGAGAGAAAAUGAUAGG&UCUAUU-UUUUUUCUUU-CCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9617_c0_g1_583_TPlot.pdf
TRINITY_DN9617_c0_g1:584	si_a787	TRINITY_DN9617_c0_g1	573	595	584	-26.30	-18.30	0.695817490494297	8.5	1-8,595-588;9-13,585-581;15-20,579-574	x-x,587-586[BULt];14-14,580-580[SIL];21-21,573-573[UP3]	.((((((.(((((..((((((((&))))))))--))))).)))))).	AGGAAGAGAGAAAAUGAUAGGAG&CUUCUAUU--UUUCUAUUUUCCA	3	0.999999978876733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN9617_c0_g1_584_TPlot.pdf
TRINITY_DN9617_c0_g1:585	si_a786	TRINITY_DN9617_c0_g1	574	596	585	-26.60	-19.40	0.729323308270677	7.5	1-9,596-588;10-14,585-581;16-21,579-574	x-x,587-586[BULt];15-15,580-580[SIL]	((((((.(((((..(((((((((&)))))))))--))))).))))))	GGAAGAGAGAAAAUGAUAGGAGA&UCUUCUAUU--UUUCUAUUUUCC	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN9617_c0_g1_585_TPlot.pdf
TRINITY_DN9617_c0_g1:586	si_s70	TRINITY_DN9617_c0_g1	574	596	586	-25.80	-18.40	0.713178294573643	7	2-9,595-588;10-19,586-577;20-21,575-574	1-1,596-596[UP5];x-x,587-587[BULt];x-x,576-576[BULt]	((.((((((((((.((((((((.&.))))))))-))))))))))-))	GGAAGAGAGAAAAUGAUAGGAGA&ACUUCUAUU-UUUUUUCUUU-CC	3	0.999999997674827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9617_c0_g1_586_TPlot.pdf
TRINITY_DN9617_c0_g1:870	si_s68	TRINITY_DN9617_c0_g1	858	879	870	-23.10	-16.00	0.692640692640693	6	1-8,879-872;10-14,870-866;15-21,864-858	9-9,871-871[SIL];x-x,865-865[BULt]	(((((((.(((((.((((((((&)))))))).)))))-)))))))	AAGGAAACAGAAGAAGAGGUUG&CAACUUCUAUUUUU-UUUCUUU	2	0.999999976968622	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9617_c0_g1_870_TPlot.pdf
TRINITY_DN9617_c0_g1:999	si_s77	TRINITY_DN9617_c0_g1	987	1009	999	-25.50	-16.60	0.650980392156863	7	1-9,1009-1001;10-14,999-995;16-21,992-987	x-x,1000-1000[BULt];15-15,994-993[AILt]	((((((..(((((.(((((((((&)))))))))-)))))-.))))))	GAAGAACCGGAAGUGAAAAAGGA&UUUUUUUUC-UUUCC-UUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9617_c0_g1_999_TPlot.pdf
TRINITY_DN961_c0_g1:2001	si_s820	TRINITY_DN961_c0_g1	1990	2010	2001	-22.10	-14.50	0.656108597285068	12.5	7-21,2004-1990	1-6,2010-2005[UP5]	(((((((((((((((......&......)))))))))))))))	UGUUUUUCGUUAUUGUCAAUU&UUUUCUUAAUAAUGAAAAACA	3	0.982199493215136	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s820_TRINITY_DN961_c0_g1_2001_TPlot.pdf
TRINITY_DN9622_c0_g1:304	si_a70	TRINITY_DN9622_c0_g1	293	313	304	-23.90	-17.20	0.719665271966527	8	1-2,313-312;4-11,310-303;13-21,301-293	3-3,311-311[SIL];12-12,302-302[SIL]	(((((((((.((((((((.((&)).)))))))).)))))))))	GGUGGAAGAGGGUUUGAAUGA&UCUUUCAAAUUGUUUUUCAUU	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN9622_c0_g1_304_TPlot.pdf
TRINITY_DN9622_c0_g1:305	si_a69	TRINITY_DN9622_c0_g1	294	314	305	-24.00	-17.30	0.720833333333333	7	1-3,314-312;5-12,310-303;14-21,301-294	4-4,311-311[SIL];13-13,302-302[SIL]	((((((((.((((((((.(((&))).)))))))).))))))))	GUGGAAGAGGGUUUGAAUGAG&UUCUUUCAAAUUGUUUUUCAU	2	0.996934238245687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN9622_c0_g1_305_TPlot.pdf
TRINITY_DN9622_c0_g1:418	si_a59	TRINITY_DN9622_c0_g1	406	427	418	-34.00	-25.30	0.744117647058824	8.5	1-12,427-416;13-18,414-409	x-x,415-415[BULt];19-21,408-406[UP3]	...((((((.((((((((((((&))))))))))))-))))))...	UCGUGAGGGCGGGCGAGUCGAU&GUCGACUCGCUU-CUUUCAAAU	4	0.651026855820384	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN9622_c0_g1_418_TPlot.pdf
TRINITY_DN9622_c0_g1:420	si_a57	TRINITY_DN9622_c0_g1	408	429	420	-36.60	-25.30	0.691256830601093	8	3-14,427-416;15-20,414-409	1-2,429-428[UP5];x-x,415-415[BULt];21-21,408-408[UP3]	.((((((.((((((((((((..&..))))))))))))-)))))).	GUGAGGGCGGGCGAGUCGAUGG&GAGUCGACUCGCUU-CUUUCAA	2	0.874883109555409	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a57_TRINITY_DN9622_c0_g1_420_TPlot.pdf
TRINITY_DN9622_c0_g1:842	si_a869	TRINITY_DN9622_c0_g1	831	851	842	-24.80	-17.10	0.689516129032258	16.5	8-19,844-833	1-7,851-845[UP5];20-21,832-831[UP3]	..((((((((((((.......&.......))))))))))))..	GAGCAACUGAGUCUCUACCAU&UUAUUAAAGAUUUAGUUGCAA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a869_TRINITY_DN9622_c0_g1_842_TPlot.pdf
TRINITY_DN9624_c0_g1:3511	si_s895	TRINITY_DN9624_c0_g1	3500	3519	3511	-31.10	-20.40	0.655948553054662	7.5	2-8,3518-3512;11-21,3510-3500	1-1,3519-3519[UP5];9-10,3511-3511[AILq]	(((((((((((.-(((((((.&.)))))))..)))))))))))	GGAAUUGAAGAU-GAGCUUAA&AUAGGCUUUCUCUUCAAUUUC	4	0.999999246646465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s895_TRINITY_DN9624_c0_g1_3511_TPlot.pdf
TRINITY_DN9625_c0_g1:1005	si_s666	TRINITY_DN9625_c0_g1	994	1014	1005	-31.30	-21.30	0.680511182108626	6.5	1-5,1014-1010;7-21,1008-994	6-6,1009-1009[SIL]	(((((((((((((((.(((((&))))).)))))))))))))))	UUCUGUGAUCGGUUCUAUUCU&GGGAUCGAAUUGAUUAUAGAA	4	0.72759589058757	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s666_TRINITY_DN9625_c0_g1_1005_TPlot.pdf
TRINITY_DN9626_c0_g1:770	si_a399	TRINITY_DN9626_c0_g1	759	779	770	-22.60	-14.70	0.650442477876106	6	1-5,779-775;7-14,773-766;16-21,764-759	6-6,774-774[SIL];15-15,765-765[SIL]	((((((.((((((((.(((((&))))).)))))))).))))))	AUGAACUGAAUAAUUGUAUGU&AUAUAGAAUUGUUUUGUUUAU	2	0.999999930274592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN9626_c0_g1_770_TPlot.pdf
TRINITY_DN962_c0_g1:1578	si_a222	TRINITY_DN962_c0_g1	1567	1587	1578	-25.20	-16.80	0.666666666666667	14	6-18,1582-1570	1-5,1587-1583[UP5];19-21,1569-1567[UP3]	...(((((((((((((.....&.....)))))))))))))...	UUAGUGGAAAUAUGAGGAGUU&UUAAACUCAUGUUUCUAUAAU	3	0.996615418310624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN962_c0_g1_1578_TPlot.pdf
TRINITY_DN962_c0_g1:2436	si_s789	TRINITY_DN962_c0_g1	2426	2445	2436	-26.20	-18.90	0.721374045801527	5.5	1-11,2445-2435;13-19,2434-2428	12-12,x-x[BULq];20-21,2427-2426[UP3]	..(((((((-(((((((((((&))))))))))).)))))))..	UGGAGAUAC-AGCUUGUUUUG&UAAAACAAGCUCGUAUUUUAU	3	0.720670515752979	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s789_TRINITY_DN962_c0_g1_2436_TPlot.pdf
TRINITY_DN962_c0_g1:2437	si_s788	TRINITY_DN962_c0_g1	2427	2446	2437	-26.20	-18.90	0.721374045801527	5	2-12,2445-2435;14-20,2434-2428	1-1,2446-2446[UP5];13-13,x-x[BULq];21-21,2427-2427[UP3]	.(((((((-(((((((((((.&.))))))))))).))))))).	GGAGAUAC-AGCUUGUUUUGA&AUAAAACAAGCUCGUAUUUUA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s788_TRINITY_DN962_c0_g1_2437_TPlot.pdf
TRINITY_DN9630_c0_g1:2027	si_s86	TRINITY_DN9630_c0_g1	2016	2036	2027	-32.90	-22.00	0.668693009118541	11	6-21,2031-2016	1-5,2036-2032[UP5]	((((((((((((((((.....&.....))))))))))))))))	AGUGGAGAAGAAGAAGAAAUA&UUUCCUUUCUUCUUCUUCGCU	2	0.999999999999726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9630_c0_g1_2027_TPlot.pdf
TRINITY_DN9630_c0_g1:2208	si_s68	TRINITY_DN9630_c0_g1	2195	2217	2208	-23.10	-16.50	0.714285714285714	5	1-10,2217-2208;12-16,2206-2202;17-21,2199-2195	11-11,2207-2207[SIL];x-x,2201-2200[BULt]	(((((..(((((.((((((((((&)))))))))).)))))--)))))	AAAGAUUAAAAAUGUAGAAGUUG&CAACUUCUAUUUUUUU--UCUUU	4	0.999999992294527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9630_c0_g1_2208_TPlot.pdf
TRINITY_DN9630_c0_g1:2214	si_s62	TRINITY_DN9630_c0_g1	2203	2223	2214	-26.50	-19.80	0.747169811320755	4.5	2-16,2222-2208;18-21,2206-2203	1-1,2223-2223[UP5];17-17,2207-2207[SIL]	((((.(((((((((((((((.&.))))))))))))))).))))	AAAAUGUAGAAGUUGUUAAUA&AGUUAGCAACUUCUAUUUUUU	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN9630_c0_g1_2214_TPlot.pdf
TRINITY_DN9635_c0_g1:3298	si_a321	TRINITY_DN9635_c0_g1	3287	3308	3298	-26.70	-17.62	0.659925093632959	10	1-5,3308-3304;9-21,3299-3287	6-8,3303-3300[AILt]	(((((((((((((....(((((&)))))-...)))))))))))))	GGAAUGAAGGAAUGUGAGGAUA&UAUCC-AUGAUUUUUUUAUUCC	4	0.999987519840183	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9635_c0_g1_3298_TPlot.pdf
TRINITY_DN9635_c0_g1:5828	si_s892	TRINITY_DN9635_c0_g1	5817	5840	5828	-29.50	-19.30	0.654237288135593	15	4-9,5837-5832;10-18,5828-5820	1-3,5840-5838[UP5];x-x,5831-5829[BULt];19-21,5819-5817[UP3]	...(((((((((...((((((...&...))))))---)))))))))...	AAAGAAGAGAAGAGUGCCUAUGUC&UAAAUAGGC---UUUCUCUUCAAU	4	0.999999757935342	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s892_TRINITY_DN9635_c0_g1_5828_TPlot.pdf
TRINITY_DN9643_c0_g1:411	si_a242	TRINITY_DN9643_c0_g1	400	419	411	-37.30	-25.10	0.672922252010724	6.5	1-3,419-417;5-7,416-414;9-18,412-403;20-21,401-400	4-4,x-x[BULq];8-8,413-413[SIL];19-19,402-402[SIL]	((.((((((((((.(((-(((&))).))).)))))))))).))	GCUGUUGGGGGAUGGAA-UGA&UCAAUUCGAUCCCCCGAUUGU	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a242_TRINITY_DN9643_c0_g1_411_TPlot.pdf
TRINITY_DN9643_c0_g1:415	si_a330	TRINITY_DN9643_c0_g1	404	424	415	-30.50	-20.30	0.665573770491803	7	2-12,423-413;14-14,411-411;16-21,409-404	1-1,424-424[UP5];13-13,412-412[SIL];15-15,410-410[SIL]	((((((.(.(((((((((((.&.))))))))))).).))))))	UUGGGGGAUGGAAUGAAGGAU&UUUUUUUAUUCCUUGUCCCGA	3	0.999996800170922	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN9643_c0_g1_415_TPlot.pdf
TRINITY_DN9648_c0_g1:2779	si_a411	TRINITY_DN9648_c0_g1	2768	2788	2779	-17.90	-12.30	0.687150837988827	8	2-10,2787-2779;13-18,2776-2771	1-1,2788-2788[UP5];11-12,2778-2777[SIL];19-21,2770-2768[UP3]	...((((((..(((((((((.&.)))))))))..))))))...	AGAUAUUUAUUUAUAAACAAG&UUUGUUUAUAUUUAAAUAAAU	4	0.999999874958037	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN9648_c0_g1_2779_TPlot.pdf
TRINITY_DN964_c0_g1:1646	si_s83	TRINITY_DN964_c0_g1	1635	1655	1646	-30.90	-20.40	0.660194174757282	6	1-7,1655-1649;9-12,1647-1644;14-21,1642-1635	8-8,1648-1648[SIL];13-13,1643-1643[SIL]	((((((((.((((.(((((((&))))))).)))).))))))))	GGAGAAGACGAGAAGAAGGAG&UUCUUUCCUUUCUUCUUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN964_c0_g1_1646_TPlot.pdf
TRINITY_DN964_c0_g1:2294	si_a547	TRINITY_DN964_c0_g1	2283	2303	2294	-26.90	-18.20	0.676579925650558	12.5	7-21,2297-2283	1-6,2303-2298[UP5]	(((((((((((((((......&......)))))))))))))))	AGAUGAAGAAGUAGACACUUU&GUUCAAUCUAUUUCUUUAUCU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN964_c0_g1_2294_TPlot.pdf
TRINITY_DN964_c0_g1:2353	si_a405	TRINITY_DN964_c0_g1	2342	2362	2353	-19.80	-13.20	0.666666666666667	8.5	2-14,2361-2349	1-1,2362-2362[UP5];15-21,2348-2342[UP3]	.......(((((((((((((.&.))))))))))))).......	AACAUUCUGAACAAAACAAUA&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN964_c0_g1_2353_TPlot.pdf
TRINITY_DN964_c0_g1:3690	si_s318	TRINITY_DN964_c0_g1	3678	3699	3690	-32.80	-21.50	0.655487804878049	10.5	1-13,3699-3687;16-16,3683-3683;19-21,3680-3678	14-15,3686-3684[AILt];17-18,3682-3681[SIL]	(((..(...(((((((((((((&)))))))))))))-..)..)))	UGUGGGGAUGCGGGAGGGGCGG&CUGUCCUUCUUGU-UACAAACA	4	0.996430622310711	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s318_TRINITY_DN964_c0_g1_3690_TPlot.pdf
TRINITY_DN9650_c0_g2:87	si_s494	TRINITY_DN9650_c0_g2	76	96	87	-19.80	-12.90	0.651515151515151	10	4-8,93-89;11-20,86-77	1-3,96-94[UP5];9-10,88-87[SIL];21-21,76-76[UP3]	.((((((((((..(((((...&...)))))..)))))))))).	CUUGUUUUGUUGUUAUUUUCU&UUUAAAUAUAAACAAAACAAU	4	0.999329438472952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s494_TRINITY_DN9650_c0_g2_87_TPlot.pdf
TRINITY_DN9650_c0_g2:931	si_s810	TRINITY_DN9650_c0_g2	918	940	931	-27.90	-19.00	0.681003584229391	4.5	1-4,940-937;6-14,935-927;15-15,925-925;16-21,923-918	5-5,936-936[SIL];x-x,926-926[BULt];x-x,924-924[BULt]	((((((.(.(((((((((.((((&)))).)))))))))-)-))))))	UAUUGAUGAAAAAGGUAAGGAAG&CUUCGUUACCUUUU-C-UUAAUA	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN9650_c0_g2_931_TPlot.pdf
TRINITY_DN9650_c0_g2:932	si_s809	TRINITY_DN9650_c0_g2	919	941	932	-28.50	-19.10	0.670175438596491	4.5	1-5,941-937;7-15,935-927;16-16,925-925;17-21,923-919	6-6,936-936[SIL];x-x,926-926[BULt];x-x,924-924[BULt]	(((((.(.(((((((((.(((((&))))).)))))))))-)-)))))	AUUGAUGAAAAAGGUAAGGAAGA&UCUUCGUUACCUUUU-C-UUAAU	3	0.99999997516321	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN9650_c0_g2_932_TPlot.pdf
TRINITY_DN9650_c0_g2:939	si_s802	TRINITY_DN9650_c0_g2	928	948	939	-26.40	-17.20	0.651515151515151	14	8-12,941-937;14-21,935-928	1-7,948-942[UP5];13-13,936-936[SIL]	((((((((.(((((.......&.......))))).))))))))	AAAGGUAAGGAAGAAUCUCAC&UAUUUUAUCUUCGUUACCUUU	3	0.999999999999715	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN9650_c0_g2_939_TPlot.pdf
TRINITY_DN9651_c0_g2:1497	si_a715	TRINITY_DN9651_c0_g2	1487	1506	1497	-33.30	-21.72	0.652252252252252	6.5	1-11,1506-1496;16-20,1492-1488	12-15,1495-1493[AILq];21-21,1487-1487[UP3]	.(((((...-(((((((((((&)))))))))))....))))).	ACCGGGGUG-GAUUAUUUUGG&CCAAAAUAAUCGUUACUCGGG	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a715_TRINITY_DN9651_c0_g2_1497_TPlot.pdf
TRINITY_DN9654_c0_g1:1646	si_a313	TRINITY_DN9654_c0_g1	1634	1655	1646	-28.70	-19.50	0.679442508710801	8	1-11,1655-1645;12-21,1643-1634	x-x,1644-1644[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	AGAGUUGUGGAAUGGAUUCAGG&CUUGGAUUUAU-CCAUGAUUUU	4	0.998965570856805	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a313_TRINITY_DN9654_c0_g1_1646_TPlot.pdf
TRINITY_DN9654_c0_g1:1803	si_s87	TRINITY_DN9654_c0_g1	1792	1814	1803	-32.90	-21.58	0.655927051671732	13	1-4,1814-1811;7-8,1806-1805;10-20,1803-1793	5-6,1810-1807[AILt];9-9,1804-1804[SIL];21-21,1792-1792[UP3]	.(((((((((((.((....((((&))))--..)).))))))))))).	UAGCGAGGAGGAUGAUAUUGGAG&UUCC--UUUCUUCUUCUUCGCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9654_c0_g1_1803_TPlot.pdf
TRINITY_DN9654_c0_g1:1804	si_s86	TRINITY_DN9654_c0_g1	1793	1815	1804	-32.90	-21.58	0.655927051671732	13	2-5,1814-1811;8-9,1806-1805;11-21,1803-1793	1-1,1815-1815[UP5];6-7,1810-1807[AILt];10-10,1804-1804[SIL]	(((((((((((.((....((((.&.))))--..)).)))))))))))	AGCGAGGAGGAUGAUAUUGGAGU&UUUCC--UUUCUUCUUCUUCGCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9654_c0_g1_1804_TPlot.pdf
TRINITY_DN9655_c1_g1:145	si_a415	TRINITY_DN9655_c1_g1	132	154	145	-18.10	-11.80	0.651933701657459	7.5	4-15,151-140;16-21,137-132	1-3,154-152[UP5];x-x,139-138[BULt]	((((((..((((((((((((...&...))))))))))))--))))))	CUAUAUCUUUGUUUAAAUAUUAA&UUUAUAUUUAAAUAA--AUAUAG	2	0.995546543497918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN9655_c1_g1_145_TPlot.pdf
TRINITY_DN9655_c1_g1:405	si_a450	TRINITY_DN9655_c1_g1	394	414	405	-25.20	-20.70	0.821428571428571	4	2-18,413-397	1-1,414-414[UP5];19-21,396-394[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	UCUUAUAACAACAAUUAUCUA&GAGAUAAUUGUUGUUAUAUAU	3	0.183263379973475	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN9655_c1_g1_405_TPlot.pdf
TRINITY_DN9656_c0_g1:1231	si_s638	TRINITY_DN9656_c0_g1	1220	1240	1231	-40.30	-27.20	0.674937965260546	11	2-8,1239-1233;11-17,1230-1224	1-1,1240-1240[UP5];9-10,1232-1231[SIL];18-21,1223-1220[UP3]	....(((((((..(((((((.&.)))))))..)))))))....	ACAGGAGGGCAUUUGCCUGCU&CGUAGGCGUUUGCCCUCGAUA	4	0.986059657706076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s638_TRINITY_DN9656_c0_g1_1231_TPlot.pdf
TRINITY_DN9660_c0_g1:691	si_a66	TRINITY_DN9660_c0_g1	680	700	691	-26.70	-17.80	0.666666666666667	8	1-4,700-697;6-12,695-689;14-20,687-681	5-5,696-696[SIL];13-13,688-688[SIL];21-21,680-680[UP3]	.(((((((.(((((((.((((&)))).))))))).))))))).	CGAAGCAAAUUGAAGGUGGUG&CGCUUCUUUCAAAUUGUUUUU	3	0.999999999999061	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN9660_c0_g1_691_TPlot.pdf
TRINITY_DN9673_c0_g1:3853	si_s796	TRINITY_DN9673_c0_g1	3843	3863	3853	-30.30	-20.50	0.676567656765677	6	1-3,3863-3861;4-12,3859-3851;14-21,3850-3843	x-x,3860-3860[BULt];13-13,x-x[BULq]	((((((((-(((((((((.(((&)))-))))))))).))))))))	GAUGAAGA-AGGAUACGAUGCU&AGC-UCGUAUUUUAUCUUCGUU	3	0.999942143284776	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN9673_c0_g1_3853_TPlot.pdf
TRINITY_DN9673_c0_g1:3997	si_s189	TRINITY_DN9673_c0_g1	3986	4006	3997	-27.90	-18.70	0.670250896057348	9.5	2-8,4005-3999;11-11,3996-3996;14-21,3993-3986	1-1,4006-4006[UP5];9-10,3998-3997[SIL];12-13,3995-3994[SIL]	((((((((..(..(((((((.&.)))))))..)..))))))))	UAUUCCAAUUUCUUCGUUGCA&AGUAACGAUUAUUUUGGAAUG	3	0.921975039230293	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s189_TRINITY_DN9673_c0_g1_3997_TPlot.pdf
TRINITY_DN9673_c0_g1:715	si_s97	TRINITY_DN9673_c0_g1	701	725	715	-36.30	-24.90	0.685950413223141	8	2-6,724-720;7-15,718-710;16-20,706-702	1-1,725-725[UP5];x-x,719-719[BULt];x-x,709-707[BULt];21-21,701-701[UP3]	.(((((...(((((((((.(((((.&.)))))-)))))))))---))))).	GUCCAAGUCUCCGGAGCGUAAGAAA&CUUCUU-CGCUUCGGA---UUGGAA	3	0.992985290375584	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s97_TRINITY_DN9673_c0_g1_715_TPlot.pdf
TRINITY_DN9674_c0_g2:1610	si_a410	TRINITY_DN9674_c0_g2	1599	1619	1610	-17.80	-14.00	0.786516853932584	6.5	1-18,1619-1602	19-21,1601-1599[UP3]	...((((((((((((((((((&))))))))))))))))))...	AAGAUUUAAGUGUAAAUAAAG&UUUUGUUUAUAUUUAAAUAAA	2	0.791583073862999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9674_c0_g2_1610_TPlot.pdf
TRINITY_DN9674_c0_g2:1611	si_a409	TRINITY_DN9674_c0_g2	1600	1620	1611	-19.50	-17.80	0.912820512820513	5.5	1-19,1620-1602	20-21,1601-1600[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	AGAUUUAAGUGUAAAUAAAGC&GUUUUGUUUAUAUUUAAAUAA	4	0.186511582509454	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN9674_c0_g2_1611_TPlot.pdf
TRINITY_DN9674_c0_g2:1612	si_a408	TRINITY_DN9674_c0_g2	1601	1621	1612	-20.10	-18.80	0.935323383084577	4.5	1-20,1621-1602	21-21,1601-1601[UP3]	.((((((((((((((((((((&)))))))))))))))))))).	GAUUUAAGUGUAAAUAAAGCA&UGUUUUGUUUAUAUUUAAAUA	3	0.149517027976982	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN9674_c0_g2_1612_TPlot.pdf
TRINITY_DN9674_c0_g2:1613	si_a407	TRINITY_DN9674_c0_g2	1602	1622	1613	-19.80	-19.30	0.974747474747475	3	1-21,1622-1602	NA	(((((((((((((((((((((&)))))))))))))))))))))	AUUUAAGUGUAAAUAAAGCAA&UUGUUUUGUUUAUAUUUAAAU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN9674_c0_g2_1613_TPlot.pdf
TRINITY_DN9674_c0_g2:1614	si_a406	TRINITY_DN9674_c0_g2	1603	1623	1614	-19.80	-18.10	0.914141414141414	4	2-21,1622-1603	1-1,1623-1623[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	UUUAAGUGUAAAUAAAGCAAG&AUUGUUUUGUUUAUAUUUAAA	3	0.291174311443338	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN9674_c0_g2_1614_TPlot.pdf
TRINITY_DN9674_c0_g2:1616	si_a404	TRINITY_DN9674_c0_g2	1605	1625	1616	-21.70	-16.40	0.755760368663594	8	4-21,1622-1605	1-3,1625-1623[UP5]	((((((((((((((((((...&...))))))))))))))))))	UAAGUGUAAAUAAAGCAAGGA&GAAUUGUUUUGUUUAUAUUUA	4	0.996846423802412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN9674_c0_g2_1616_TPlot.pdf
TRINITY_DN9674_c0_g2:1677	si_a783	TRINITY_DN9674_c0_g2	1666	1686	1677	-24.70	-16.70	0.676113360323887	8	2-9,1685-1678;11-17,1676-1670	1-1,1686-1686[UP5];10-10,1677-1677[SIL];18-21,1669-1666[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AAUAAGAAAAAAAGAGGAGUC&AACUCUUCUAUUUUUCUAUUU	3	0.999999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9674_c0_g2_1677_TPlot.pdf
TRINITY_DN9676_c0_g1:598	si_a632	TRINITY_DN9676_c0_g1	587	607	598	-26.10	-17.40	0.666666666666667	10	2-11,606-597;14-17,594-591;19-20,589-588	1-1,607-607[UP5];12-13,596-595[SIL];18-18,590-590[SIL];21-21,587-587[UP3]	.((.((((..((((((((((.&.))))))))))..)))).)).	CCUGGAGAUUGUCGACGUGAA&AUUAUGUCGAUUUUUUUGAGU	2	0.99998394891348	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN9676_c0_g1_598_TPlot.pdf
TRINITY_DN9676_c0_g1:634	si_a144	TRINITY_DN9676_c0_g1	623	643	634	-27.40	-19.10	0.697080291970803	11	5-19,639-625;21-21,623-623	1-4,643-640[UP5];20-20,624-624[SIL]	(.(((((((((((((((....&....))))))))))))))).)	CGUUGAAGCAGCAAUGACGAU&UUAAUCGUUGUUGUUUUAAGG	3	0.948995814239287	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN9676_c0_g1_634_TPlot.pdf
TRINITY_DN9677_c2_g1:486	si_s62	TRINITY_DN9677_c2_g1	475	495	486	-26.50	-17.80	0.671698113207547	10.5	1-7,495-489;9-16,487-480	8-8,488-488[SIL];17-21,479-475[UP3]	.....((((((((.(((((((&))))))).)))))))).....	UUAAUAUGGAGGUGGCUGGCU&AGUUAGCAACUUCUAUUUUUU	3	0.999840799792015	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN9677_c2_g1_486_TPlot.pdf
TRINITY_DN967_c0_g1:2485	si_a66	TRINITY_DN967_c0_g1	2476	2494	2485	-26.70	-17.90	0.670411985018727	7.5	1-10,2494-2485;14-21,2483-2476	11-13,2484-2484[AILq]	((((((((.--((((((((((&))))))))))...))))))))	AGGGGCGAA--GAAAGAAGCG&CGCUUCUUUCAAAUUGUUUUU	4	0.999999999990978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN967_c0_g1_2485_TPlot.pdf
TRINITY_DN9683_c1_g1:901	si_a783	TRINITY_DN9683_c1_g1	890	910	901	-24.70	-18.90	0.765182186234818	7.5	3-10,908-901;12-21,899-890	1-2,910-909[UP5];11-11,900-900[SIL]	((((((((((.((((((((..&..)))))))).))))))))))	AAAUAGAAGGCUAGAGGAGAC&AACUCUUCUAUUUUUCUAUUU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9683_c1_g1_901_TPlot.pdf
TRINITY_DN9684_c0_g1:57	si_s248	TRINITY_DN9684_c0_g1	46	66	57	-31.90	-22.40	0.702194357366771	6	1-12,66-55;15-20,52-47	13-14,54-53[SIL];21-21,46-46[UP3]	.((((((..((((((((((((&))))))))))))..)))))).	AGGUAUGGAGGGAAAUGCUUG&UAGGCAUUUCCCGAUAUAUUA	3	0.856785340917924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN9684_c0_g1_57_TPlot.pdf
TRINITY_DN968_c0_g1:4950	si_a497	TRINITY_DN968_c0_g1	4931	4960	4950	-32.00	-21.50	0.671875	20.5	2-5,4959-4956;6-12,4954-4948;13-21,4939-4931	1-1,4960-4960[UP5];x-x,4955-4955[BULt];x-x,4947-4940[BULt]	(((((((((........(((((((.((((.&.))))-)))))))--------)))))))))	GAGGAAGACACCAGUGAGAAGAACUGACAA&AUGUC-GUUUUUC--------GUCUUCCUU	2	0.9999999929398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN968_c0_g1_4950_TPlot.pdf
TRINITY_DN968_c0_g1:5014	si_a759	TRINITY_DN968_c0_g1	5003	5023	5014	-32.60	-23.10	0.708588957055215	6.5	1-6,5023-5018;8-13,5016-5011;15-21,5009-5003	7-7,5017-5017[SIL];14-14,5010-5010[SIL]	(((((((.((((((.((((((&)))))).)))))).)))))))	UCGGUCGUAAACUCUGAGGAG&CUCCUUUGGGUUUUUGAUUGA	3	0.990496432683907	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a759_TRINITY_DN968_c0_g1_5014_TPlot.pdf
TRINITY_DN968_c0_g1:5015	si_a758	TRINITY_DN968_c0_g1	5004	5024	5015	-34.00	-23.40	0.688235294117647	6.5	1-7,5024-5018;9-14,5016-5011;16-21,5009-5004	8-8,5017-5017[SIL];15-15,5010-5010[SIL]	((((((.((((((.(((((((&))))))).)))))).))))))	CGGUCGUAAACUCUGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	2	0.98961856974918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN968_c0_g1_5015_TPlot.pdf
TRINITY_DN968_c0_g1:5016	si_a757	TRINITY_DN968_c0_g1	5005	5025	5016	-33.10	-22.20	0.670694864048338	7.5	2-8,5024-5018;10-15,5016-5011;17-21,5009-5005	1-1,5025-5025[UP5];9-9,5017-5017[SIL];16-16,5010-5010[SIL]	(((((.((((((.(((((((.&.))))))).)))))).)))))	GGUCGUAAACUCUGAGGAGGC&ACCUCCUUUGGGUUUUUGAUU	2	0.999955461198746	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a757_TRINITY_DN968_c0_g1_5016_TPlot.pdf
TRINITY_DN968_c0_g1:894	si_a119	TRINITY_DN968_c0_g1	879	903	894	-30.30	-20.18	0.666006600660066	15	1-12,903-892;14-18,886-882	13-13,891-887[AILt];19-21,881-879[UP3]	...(((((.....((((((((((((&))))))))))))----.)))))...	AUGUGCUACGCCGGGAGCAAGCUCG&CGAGCUUGUUUU----AUAGCAAUA	2	0.992853418057827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a119_TRINITY_DN968_c0_g1_894_TPlot.pdf
TRINITY_DN9690_c0_g1:6486	si_a410	TRINITY_DN9690_c0_g1	6475	6495	6486	-17.80	-11.60	0.651685393258427	8.5	3-8,6493-6488;10-19,6486-6477	1-2,6495-6494[UP5];9-9,6487-6487[SIL];20-21,6476-6475[UP3]	..((((((((((.((((((..&..)))))).))))))))))..	UGUGUUUAAAUAAGAACAACA&UUUUGUUUAUAUUUAAAUAAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9690_c0_g1_6486_TPlot.pdf
TRINITY_DN9691_c0_g1:467	si_s76	TRINITY_DN9691_c0_g1	455	476	467	-23.60	-15.80	0.669491525423729	7	1-8,476-469;10-14,467-463;15-19,461-457	9-9,468-468[SIL];x-x,462-462[BULt];20-21,456-455[UP3]	..(((((.(((((.((((((((&)))))))).)))))-)))))..	GUGAAAGAGAAAGUGAAGAAAU&AUUUUUUUUCUUUC-CUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9691_c0_g1_467_TPlot.pdf
TRINITY_DN9692_c2_g1:202	si_a870	TRINITY_DN9692_c2_g1	192	211	202	-24.80	-17.10	0.689516129032258	4.5	1-11,211-201;13-16,200-197;18-21,195-192	12-12,x-x[BULq];17-17,196-196[SIL]	((((.((((-(((((((((((&))))))))))).)))).))))	AUUGGAACU-GAUCUUUAAUG&UAUUAAAGAUUUAGUUGCAAU	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a870_TRINITY_DN9692_c2_g1_202_TPlot.pdf
TRINITY_DN9694_c1_g1:117	si_s73	TRINITY_DN9694_c1_g1	106	127	117	-24.00	-17.20	0.716666666666667	11	1-3,127-125;5-18,122-109	4-4,124-123[AILt];19-21,108-106[UP3]	...((((((((((((((..(((&)))-.))))))))))))))...	GUCGGAAAGAGGAGGAAGAAGA&UCU-AUUUUUUUUCUUUCCUUU	2	0.999999999449532	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9694_c1_g1_117_TPlot.pdf
TRINITY_DN9694_c1_g1:119	si_s71	TRINITY_DN9694_c1_g1	108	129	119	-25.70	-20.40	0.793774319066148	8.5	1-5,129-125;7-20,122-109	6-6,124-123[AILt];21-21,108-108[UP3]	.((((((((((((((..(((((&)))))-.)))))))))))))).	CGGAAAGAGGAGGAAGAAGAAG&CUUCU-AUUUUUUUUCUUUCCU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9694_c1_g1_119_TPlot.pdf
TRINITY_DN9695_c0_g1:289	si_s76	TRINITY_DN9695_c0_g1	278	298	289	-23.60	-16.70	0.707627118644068	8.5	1-15,298-284	16-21,283-278[UP3]	......(((((((((((((((&)))))))))))))))......	UUGCGCGGGAAGAAGAAAGAU&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9695_c0_g1_289_TPlot.pdf
TRINITY_DN9695_c0_g1:290	si_s75	TRINITY_DN9695_c0_g1	279	299	290	-24.00	-17.50	0.729166666666667	8	1-16,299-284	17-21,283-279[UP3]	.....((((((((((((((((&)))))))))))))))).....	UGCGCGGGAAGAAGAAAGAUG&UAUUUUUUUUCUUUCCUUUCU	4	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9695_c0_g1_290_TPlot.pdf
TRINITY_DN9695_c0_g1:291	si_s74	TRINITY_DN9695_c0_g1	280	300	291	-25.00	-17.70	0.708	8.5	2-17,299-284	1-1,300-300[UP5];18-21,283-280[UP3]	....((((((((((((((((.&.))))))))))))))))....	GCGCGGGAAGAAGAAAGAUGU&CUAUUUUUUUUCUUUCCUUUC	3	0.999999999999908	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9695_c0_g1_291_TPlot.pdf
TRINITY_DN9695_c0_g1:292	si_s73	TRINITY_DN9695_c0_g1	281	301	292	-24.00	-17.70	0.7375	9.5	3-18,299-284	1-2,301-300[UP5];19-21,283-281[UP3]	...((((((((((((((((..&..))))))))))))))))...	CGCGGGAAGAAGAAAGAUGUA&UCUAUUUUUUUUCUUUCCUUU	3	0.999999999943926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9695_c0_g1_292_TPlot.pdf
TRINITY_DN9695_c0_g1:293	si_s72	TRINITY_DN9695_c0_g1	282	302	293	-24.10	-17.70	0.734439834024896	10.5	4-19,299-284	1-3,302-300[UP5];20-21,283-282[UP3]	..((((((((((((((((...&...))))))))))))))))..	GCGGGAAGAAGAAAGAUGUAC&UUCUAUUUUUUUUCUUUCCUU	3	0.999999999975549	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9695_c0_g1_293_TPlot.pdf
TRINITY_DN9695_c0_g1:294	si_s71	TRINITY_DN9695_c0_g1	283	303	294	-25.70	-17.70	0.688715953307393	11.5	5-20,299-284	1-4,303-300[UP5];21-21,283-283[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGGAAGAAGAAAGAUGUACA&CUUCUAUUUUUUUUCUUUCCU	2	0.999999999999345	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9695_c0_g1_294_TPlot.pdf
TRINITY_DN9695_c0_g1:295	si_s70	TRINITY_DN9695_c0_g1	284	304	295	-25.80	-17.40	0.674418604651163	12	6-21,299-284	1-5,304-300[UP5]	((((((((((((((((.....&.....))))))))))))))))	GGGAAGAAGAAAGAUGUACAA&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999267	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9695_c0_g1_295_TPlot.pdf
TRINITY_DN9695_c0_g1:352	si_s84	TRINITY_DN9695_c0_g1	339	361	352	-32.30	-22.80	0.705882352941177	6	1-13,361-349;14-15,346-345;17-21,343-339	x-x,348-347[BULt];16-16,344-344[SIL]	(((((.((..(((((((((((((&)))))))))))))--)).)))))	CGAGGUAGCUGGGGAAGGAAAGA&UCUUUCCUUUCUU--CUUCUUCG	2	0.99999861751138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN9695_c0_g1_352_TPlot.pdf
TRINITY_DN9695_c0_g1:353	si_s83	TRINITY_DN9695_c0_g1	340	362	353	-30.90	-21.30	0.689320388349515	5.5	1-14,362-349;15-16,346-345;18-21,343-340	x-x,348-347[BULt];17-17,344-344[SIL]	((((.((..((((((((((((((&))))))))))))))--)).))))	GAGGUAGCUGGGGAAGGAAAGAA&UUCUUUCCUUUCUU--CUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9695_c0_g1_353_TPlot.pdf
TRINITY_DN9695_c0_g1:356	si_s80	TRINITY_DN9695_c0_g1	340	365	356	-28.20	-20.10	0.712765957446809	10	3-17,363-349;18-21,343-340	1-2,365-364[UP5];x-x,348-344[BULt]	((((.....(((((((((((((((..&..)))))))))))))))-----))))	GAGGUAGCUGGGGAAGGAAAGAAAUA&UUUUUCUUUCCUUUCUU-----CUUC	2	0.999999999921022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9695_c0_g1_356_TPlot.pdf
TRINITY_DN9695_c0_g1:357	si_s74	TRINITY_DN9695_c0_g1	346	366	357	-25.00	-18.30	0.732	7	2-18,365-349	1-1,366-366[UP5];19-21,348-346[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	GCUGGGGAAGGAAAGAAAUAA&CUAUUUUUUUUCUUUCCUUUC	2	0.999987170517223	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9695_c0_g1_357_TPlot.pdf
TRINITY_DN9695_c0_g1:358	si_s73	TRINITY_DN9695_c0_g1	347	368	358	-24.00	-18.60	0.775	7	1-3,368-366;4-19,364-349	x-x,365-365[BULt];20-21,348-347[UP3]	..((((((((((((((((.(((&)))-))))))))))))))))..	CUGGGGAAGGAAAGAAAUAAGA&UCU-AUUUUUUUUCUUUCCUUU	3	0.999986530720086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9695_c0_g1_358_TPlot.pdf
TRINITY_DN9695_c0_g1:360	si_s76	TRINITY_DN9695_c0_g1	349	369	360	-23.60	-19.50	0.826271186440678	5.5	2-5,368-365;7-21,363-349	1-1,369-369[UP5];6-6,364-364[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	GGGGAAGGAAAGAAAUAAGAC&AUUUUUUUUCUUUCCUUUCUU	2	0.996350675232095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9695_c0_g1_360_TPlot.pdf
TRINITY_DN9695_c0_g1:361	si_s75	TRINITY_DN9695_c0_g1	350	370	361	-24.00	-19.20	0.8	7	3-6,368-365;8-21,363-350	1-2,370-369[UP5];7-7,364-364[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	GGGAAGGAAAGAAAUAAGACC&UAUUUUUUUUCUUUCCUUUCU	2	0.995201240583043	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9695_c0_g1_361_TPlot.pdf
TRINITY_DN9696_c0_g1:1717	si_a412	TRINITY_DN9696_c0_g1	1707	1726	1717	-18.30	-13.20	0.721311475409836	6.5	1-10,1726-1717;13-20,1715-1708	11-12,1716-1716[AILq];21-21,1707-1707[UP3]	.((((((((.-((((((((((&))))))))))..)))))))).	AGUUUAUUUU-GUAUAAACAA&UUGUUUAUAUUUAAAUAAAUA	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN9696_c0_g1_1717_TPlot.pdf
TRINITY_DN9696_c0_g1:2439	si_s79	TRINITY_DN9696_c0_g1	2421	2448	2439	-26.20	-17.60	0.67175572519084	13	3-14,2446-2435;15-21,2427-2421	1-2,2448-2447[UP5];x-x,2434-2428[BULt]	(((((((.......((((((((((((..&..))))))))))))-------)))))))	AAGAAGAACUAAUUAAGGAAAGGGAGUU&UUUUUUCUUUCCUU-------UCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9696_c0_g1_2439_TPlot.pdf
TRINITY_DN9696_c0_g1:3570	si_a675	TRINITY_DN9696_c0_g1	3558	3580	3570	-34.00	-23.20	0.682352941176471	6.5	1-4,3580-3577;5-13,3575-3567;14-17,3565-3562;19-20,3560-3559	x-x,3576-3576[BULt];x-x,3566-3566[BULt];18-18,3561-3561[SIL];21-21,3558-3558[UP3]	.((.((((.(((((((((.((((&))))-)))))))))-)))).)).	UGAGCGCGAUGGAUAAGGCAAUC&GAUU-CCUUAUUCA-CGCGGUUU	2	0.769762884066751	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a675_TRINITY_DN9696_c0_g1_3570_TPlot.pdf
TRINITY_DN9696_c0_g2:860	si_a395	TRINITY_DN9696_c0_g2	848	869	860	-24.70	-17.50	0.708502024291498	4	1-11,869-859;12-21,857-848	x-x,858-858[BULt]	((((((((((.(((((((((((&)))))))))))-))))))))))	ACAAGAUAAUCUUUAUAUUCUU&AAGAAUAUAGA-AUUGUUUUGU	2	0.711948179655633	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a395_TRINITY_DN9696_c0_g2_860_TPlot.pdf
TRINITY_DN9697_c0_g1:388	si_s339	TRINITY_DN9697_c0_g1	377	396	388	-35.40	-23.80	0.672316384180791	6.5	1-8,396-389;10-20,388-378	9-9,x-x[BULq];21-21,377-377[UP3]	.(((((((((((-((((((((&)))))))).))))))))))).	GUUAUUUCCCUG-GGAUUGUA&UACGAUUCACGGGGAGAUAAA	2	0.673770251212111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s339_TRINITY_DN9697_c0_g1_388_TPlot.pdf
TRINITY_DN969_c0_g1:11049	si_a764	TRINITY_DN969_c0_g1	11039	11058	11049	-28.90	-19.90	0.688581314878893	8	1-11,11058-11048;14-19,11046-11041	12-13,11047-11047[AILq];20-21,11040-11039[UP3]	..((((((.-(((((((((((&)))))))))))..))))))..	GAGGGUCAC-CAAAGACCCGA&UUGGGUUUUUGAUUGAUUCAA	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a764_TRINITY_DN969_c0_g1_11049_TPlot.pdf
TRINITY_DN969_c0_g1:11051	si_a762	TRINITY_DN969_c0_g1	11041	11060	11051	-29.70	-20.30	0.683501683501683	6	2-13,11059-11048;16-21,11046-11041	1-1,11060-11060[UP5];14-15,11047-11047[AILq]	((((((.-((((((((((((.&.))))))))))))..))))))	GGGUCAC-CAAAGACCCGAAU&CUUUGGGUUUUUGAUUGAUUC	4	0.99998263567328	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN969_c0_g1_11051_TPlot.pdf
TRINITY_DN969_c0_g1:1788	si_a633	TRINITY_DN969_c0_g1	1777	1797	1788	-26.40	-20.30	0.768939393939394	9	5-19,1793-1779	1-4,1797-1794[UP5];20-21,1778-1777[UP3]	..(((((((((((((((....&....)))))))))))))))..	CUCUCAAAAAAAUCGACUUCU&UUAUGUCGAUUUUUUUGAGUA	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a633_TRINITY_DN969_c0_g1_1788_TPlot.pdf
TRINITY_DN9700_c0_g2:69	si_a339	TRINITY_DN9700_c0_g2	56	78	69	-31.10	-20.68	0.664951768488746	12.5	1-11,78-68;14-19,63-58	12-13,67-64[AILt];20-21,57-56[UP3]	..((((((....(((((((((((&)))))))))))--..))))))..	GAGAUGUUCGAGUGGGACAGGGG&UCCUUGUCCCG--AAAAUAUUAA	4	0.978495192829739	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a339_TRINITY_DN9700_c0_g2_69_TPlot.pdf
TRINITY_DN9704_c0_g1:42	si_a405	TRINITY_DN9704_c0_g1	31	51	42	-19.80	-15.70	0.792929292929293	10.5	4-19,48-33	1-3,51-49[UP5];20-21,32-31[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAAAAUAUGAACGAGGCACGA&AAUUGUUUUGUUUAUAUUUAA	4	0.980604041797093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN9704_c0_g1_42_TPlot.pdf
TRINITY_DN9708_c0_g1:262	si_s1	TRINITY_DN9708_c0_g1	251	271	262	-18.70	-14.40	0.770053475935829	7	1-7,271-265;10-21,262-251	8-9,264-263[SIL]	((((((((((((..(((((((&)))))))..))))))))))))	UGAUGAUAAGUAUAAUAAGGA&UUUUUAUAUUACUUAUUAUUA	2	0.852909453648092	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s1_TRINITY_DN9708_c0_g1_262_TPlot.pdf
TRINITY_DN970_c0_g1:1420	si_a472	TRINITY_DN970_c0_g1	1409	1429	1420	-21.50	-14.50	0.674418604651163	9.5	4-18,1426-1412	1-3,1429-1427[UP5];19-21,1411-1409[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUAGUAACAAUAAUUAUAAUU&AUAUGUAAUUAUUGUUAUAUA	4	0.999967744496363	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a472_TRINITY_DN970_c0_g1_1420_TPlot.pdf
TRINITY_DN970_c0_g1:1421	si_a471	TRINITY_DN970_c0_g1	1410	1430	1421	-21.10	-14.50	0.687203791469194	10.5	5-19,1426-1412	1-4,1430-1427[UP5];20-21,1411-1410[UP3]	..(((((((((((((((....&....)))))))))))))))..	UAGUAACAAUAAUUAUAAUUU&AAUAUGUAAUUAUUGUUAUAU	3	0.999949787575333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a471_TRINITY_DN970_c0_g1_1421_TPlot.pdf
TRINITY_DN970_c0_g1:1423	si_a469	TRINITY_DN970_c0_g1	1412	1432	1423	-21.10	-14.00	0.663507109004739	12.5	7-21,1426-1412	1-6,1432-1427[UP5]	(((((((((((((((......&......)))))))))))))))	GUAACAAUAAUUAUAAUUUAG&AUAAUAUGUAAUUAUUGUUAU	4	0.999997703315116	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a469_TRINITY_DN970_c0_g1_1423_TPlot.pdf
TRINITY_DN970_c0_g1:224	si_a622	TRINITY_DN970_c0_g1	205	234	224	-35.10	-23.50	0.66951566951567	22	1-4,234-231;5-11,229-223;12-21,214-205	x-x,230-230[BULt];x-x,222-215[BULt]	((((((((((........(((((((.((((&))))-)))))))--------))))))))))	GUCGACAUGGCUGGAGGUUAUGCCUGGGUC&GACU-AGGCGUA--------UUAUGUCGAU	3	0.887672547974955	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a622_TRINITY_DN970_c0_g1_224_TPlot.pdf
TRINITY_DN970_c0_g1:2334	si_s899	TRINITY_DN970_c0_g1	2322	2343	2334	-28.30	-18.70	0.660777385159011	10.5	1-11,2343-2333;14-17,2329-2326	12-13,2332-2330[AILt];18-21,2325-2322[UP3]	....((((...(((((((((((&)))))))))))-..))))....	CGCCGAAGACAGAAGAGAAGGC&GCUUUCUCUUC-AAUUUCAAUU	4	0.99999999949483	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s899_TRINITY_DN970_c0_g1_2334_TPlot.pdf
TRINITY_DN970_c0_g1:316	si_a447	TRINITY_DN970_c0_g1	305	330	316	-25.70	-17.40	0.67704280155642	14.5	1-7,330-324;8-18,318-308	x-x,323-319[BULt];19-21,307-305[UP3]	...(((((((((((.....(((((((&)))))))-----)))))))))))...	CAAAGCAACAAUUGGCUGUUCUCAUA&UAUGAGA-----UAAUUGUUGUUAUA	2	0.971549756688101	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a447_TRINITY_DN970_c0_g1_316_TPlot.pdf
TRINITY_DN970_c0_g1:317	si_a446	TRINITY_DN970_c0_g1	306	331	317	-25.50	-17.40	0.68235294117647	14.5	2-8,330-324;9-19,318-308	1-1,331-331[UP5];x-x,323-319[BULt];20-21,307-306[UP3]	..(((((((((((.....(((((((.&.)))))))-----)))))))))))..	AAAGCAACAAUUGGCUGUUCUCAUAA&AUAUGAGA-----UAAUUGUUGUUAU	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a446_TRINITY_DN970_c0_g1_317_TPlot.pdf
TRINITY_DN970_c0_g1:3275	si_s295	TRINITY_DN970_c0_g1	3264	3283	3275	-32.20	-22.10	0.686335403726708	8	2-7,3282-3277;9-17,3276-3268	1-1,3283-3283[UP5];8-8,x-x[BULq];18-21,3267-3264[UP3]	....(((((((((-((((((.&.)))))).)))))))))....	CACCUGCAGUUCC-AUCGACG&AGUCGAUUGGAAUUGCGAAAA	4	0.904938281450896	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN970_c0_g1_3275_TPlot.pdf
TRINITY_DN970_c0_g1:3276	si_s294	TRINITY_DN970_c0_g1	3265	3284	3276	-32.60	-22.10	0.677914110429448	9	3-8,3282-3277;10-18,3276-3268	1-2,3284-3283[UP5];9-9,x-x[BULq];19-21,3267-3265[UP3]	...(((((((((-((((((..&..)))))).)))))))))...	ACCUGCAGUUCC-AUCGACGC&UAGUCGAUUGGAAUUGCGAAA	3	0.954829485643268	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN970_c0_g1_3276_TPlot.pdf
TRINITY_DN970_c0_g1:544	si_a25	TRINITY_DN970_c0_g1	531	552	544	-26.50	-17.60	0.664150943396226	11	1-6,552-547;9-12,545-542;13-21,539-531	7-8,546-546[AILq];x-x,541-540[BULt]	(((((((((..((((.-((((((&))))))..))))--)))))))))	GGUCUUAGAAAACUGU-GAUGAA&UUUAUUUUUAGU--UCUAAGACC	3	0.998638949846762	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a25_TRINITY_DN970_c0_g1_544_TPlot.pdf
TRINITY_DN9710_c0_g1:668	si_s600	TRINITY_DN9710_c0_g1	657	677	668	-28.20	-23.00	0.815602836879433	8.5	4-18,674-660	1-3,677-675[UP5];19-21,659-657[UP3]	...(((((((((((((((...&...)))))))))))))))...	UCCAAAGGAUUCGCUUGGGAA&AAUCCAAGCGAAUCUUUUUUA	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN9710_c0_g1_668_TPlot.pdf
TRINITY_DN9712_c0_g1:2230	si_a412	TRINITY_DN9712_c0_g1	2219	2239	2230	-18.30	-12.80	0.699453551912568	5	2-13,2238-2227;15-21,2225-2219	1-1,2239-2239[UP5];14-14,2226-2226[SIL]	(((((((.((((((((((((.&.)))))))))))).)))))))	UAUUUAUAUAGGUAUAAAUAU&UUGUUUAUAUUUAAAUAAAUA	4	0.99943151405541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN9712_c0_g1_2230_TPlot.pdf
TRINITY_DN9713_c0_g1:862	si_a55	TRINITY_DN9713_c0_g1	849	871	862	-38.90	-26.00	0.668380462724936	8.5	1-12,871-860;13-15,858-856;17-21,853-849	x-x,859-859[BULt];16-16,855-854[AILt]	(((((..(((.((((((((((((&))))))))))))-)))-.)))))	GGAGGCUGGCUGGGUCGGCUUCU&AGGAGUCGACUC-GCU-UCUUUC	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a55_TRINITY_DN9713_c0_g1_862_TPlot.pdf
TRINITY_DN971_c0_g1:1046	si_s42	TRINITY_DN971_c0_g1	1035	1055	1046	-24.90	-16.60	0.666666666666667	7	1-6,1055-1050;8-15,1048-1041;17-19,1039-1037	7-7,1049-1049[SIL];16-16,1040-1040[SIL];20-21,1036-1035[UP3]	..(((.((((((((.((((((&)))))).)))))))).)))..	GAGAACUCCGAUUAAUGAAGA&UCUUUAAUAAUUGGAUUUCAA	3	0.997398573034887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s42_TRINITY_DN971_c0_g1_1046_TPlot.pdf
TRINITY_DN971_c0_g1:1225	si_s67	TRINITY_DN971_c0_g1	1214	1233	1225	-25.60	-16.80	0.65625	7	1-3,1233-1231;5-8,1229-1226;10-21,1225-1214	4-4,1230-1230[SIL];9-9,x-x[BULq]	((((((((((((-((((.(((&))).)))).))))))))))))	AAGGGAGGAAAU-GAGGAUGC&GCAACUUCUAUUUUUUUUCUU	3	0.999999999999973	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN971_c0_g1_1225_TPlot.pdf
TRINITY_DN9721_c0_g3:1322	si_s421	TRINITY_DN9721_c0_g3	1311	1333	1322	-23.00	-15.20	0.660869565217391	9	1-8,1333-1326;10-19,1322-1313	9-9,1325-1323[AILt];20-21,1312-1311[UP3]	..((((((((((...((((((((&))))))))--.))))))))))..	CGUAUUGUUAUGGAAAGAAUAUG&CAUAUUCU--AUAUAACAAUAAU	4	0.985169082279771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN9721_c0_g3_1322_TPlot.pdf
TRINITY_DN9721_c0_g3:2697	si_a19	TRINITY_DN9721_c0_g3	2686	2707	2697	-27.00	-19.12	0.708148148148148	11.5	1-7,2707-2701;11-20,2696-2687	8-10,2700-2697[AILt];21-21,2686-2686[UP3]	.((((((((((....(((((((&)))))))-...)))))))))).	UGGGCUGAAAAGUUCGUAGGCU&AGCCUAU-UUAUUUUUAGUUCU	4	0.989118341652313	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a19_TRINITY_DN9721_c0_g3_2697_TPlot.pdf
TRINITY_DN9722_c0_g2:309	si_s75	TRINITY_DN9722_c0_g2	298	318	309	-24.00	-15.80	0.658333333333333	7	3-15,316-304;17-21,302-298	1-2,318-317[UP5];16-16,303-303[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	AGAAAAGAAGGAGAAAAAGGA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9722_c0_g2_309_TPlot.pdf
TRINITY_DN9722_c0_g2:313	si_s84	TRINITY_DN9722_c0_g2	303	322	313	-32.30	-24.00	0.743034055727554	3.5	1-10,322-313;12-20,312-304	11-11,x-x[BULq];21-21,303-303[UP3]	.(((((((((-((((((((((&)))))))))).))))))))).	AGAAGGAGAA-AAAGGAAAGA&UCUUUCCUUUCUUCUUCUUCG	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN9722_c0_g2_313_TPlot.pdf
TRINITY_DN9722_c0_g2:317	si_s80	TRINITY_DN9722_c0_g2	304	326	317	-28.20	-21.10	0.74822695035461	9.5	5-13,322-314;14-21,311-304	1-4,326-323[UP5];x-x,313-312[BULt]	((((((((..(((((((((....&....)))))))))--))))))))	GAAGGAGAAAAAGGAAAGAUCUU&UUUUUCUUUCCUU--UCUUCUUC	4	0.999999999580479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN9722_c0_g2_317_TPlot.pdf
TRINITY_DN9732_c0_g1:3725	si_s76	TRINITY_DN9732_c0_g1	3715	3734	3725	-23.60	-16.40	0.694915254237288	6.5	2-11,3733-3724;14-20,3722-3716	1-1,3734-3734[UP5];12-13,3723-3723[AILq];21-21,3715-3715[UP3]	.(((((((.-((((((((((.&.))))))))))..))))))).	CGGAAAGGU-GGAAAAAAAAC&AUUUUUUUUCUUUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9732_c0_g1_3725_TPlot.pdf
TRINITY_DN9732_c0_g1:3726	si_s75	TRINITY_DN9732_c0_g1	3716	3735	3726	-24.00	-16.40	0.683333333333333	6.5	3-12,3733-3724;15-21,3722-3716	1-2,3735-3734[UP5];13-14,3723-3723[AILq]	(((((((.-((((((((((..&..))))))))))..)))))))	GGAAAGGU-GGAAAAAAAACU&UAUUUUUUUUCUUUCCUUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9732_c0_g1_3726_TPlot.pdf
TRINITY_DN9732_c0_g1:3762	si_a788	TRINITY_DN9732_c0_g1	3750	3771	3762	-24.80	-16.40	0.661290322580645	4.5	1-12,3771-3760;14-18,3758-3754;19-19,3752-3752	13-13,3759-3759[SIL];x-x,3753-3753[BULt];20-21,3751-3750[UP3]	..(.(((((.((((((((((((&)))))))))))).)))))-)..	ACGAGAGAAAAGAAAAAUAGAA&UUCUAUUUUUCUAUUUUC-CAA	2	0.999999996066599	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN9732_c0_g1_3762_TPlot.pdf
TRINITY_DN9732_c0_g1:3803	si_s74	TRINITY_DN9732_c0_g1	3792	3813	3803	-25.00	-17.10	0.684	8	1-6,3813-3808;7-9,3806-3804;11-20,3802-3793	x-x,3807-3807[BULt];10-10,3803-3803[SIL];21-21,3792-3792[UP3]	.((((((((((.(((.((((((&))))))-))).)))))))))).	AAAGGGAGAGAUAGAUAGAUAG&CUAUUU-UUUUUCUUUCCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9732_c0_g1_3803_TPlot.pdf
TRINITY_DN9732_c0_g1:3804	si_s73	TRINITY_DN9732_c0_g1	3793	3814	3804	-24.00	-17.30	0.720833333333333	7.5	1-7,3814-3808;8-10,3806-3804;12-21,3802-3793	x-x,3807-3807[BULt];11-11,3803-3803[SIL]	((((((((((.(((.(((((((&)))))))-))).))))))))))	AAGGGAGAGAUAGAUAGAUAGG&UCUAUUU-UUUUUCUUUCCUUU	3	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9732_c0_g1_3804_TPlot.pdf
TRINITY_DN9732_c0_g1:3805	si_s72	TRINITY_DN9732_c0_g1	3794	3815	3805	-24.10	-16.90	0.701244813278008	8.5	1-8,3815-3808;9-11,3806-3804;13-21,3802-3794	x-x,3807-3807[BULt];12-12,3803-3803[SIL]	(((((((((.(((.((((((((&))))))))-))).)))))))))	AGGGAGAGAUAGAUAGAUAGGG&UUCUAUUU-UUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9732_c0_g1_3805_TPlot.pdf
TRINITY_DN9732_c0_g1:3809	si_s69	TRINITY_DN9732_c0_g1	3797	3818	3809	-23.40	-15.30	0.653846153846154	10	3-11,3816-3808;12-14,3806-3804;16-21,3802-3797	1-2,3818-3817[UP5];x-x,3807-3807[BULt];15-15,3803-3803[SIL]	((((((.(((.(((((((((..&..)))))))))-))).))))))	GAGAGAUAGAUAGAUAGGGGGA&AACUUCUAUUU-UUUUUCUUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9732_c0_g1_3809_TPlot.pdf
TRINITY_DN9732_c0_g1:3921	si_a789	TRINITY_DN9732_c0_g1	3906	3930	3921	-24.80	-16.70	0.673387096774194	13	1-11,3930-3920;12-18,3915-3909	x-x,3919-3916[BULt];19-21,3908-3906[UP3]	...(((((((....(((((((((((&)))))))))))----)))))))...	AAAGGGGAAUAAAAGGAAAAAUAGA&UCUAUUUUUCU----AUUUUCCAAU	4	0.999999999914403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN9732_c0_g1_3921_TPlot.pdf
TRINITY_DN9738_c1_g1:106	si_a551	TRINITY_DN9738_c1_g1	94	115	106	-31.60	-23.40	0.740506329113924	9.5	2-10,114-106;13-18,103-98;19-21,96-94	1-1,115-115[UP5];11-12,105-104[SIL];x-x,97-97[BULt]	(((.((((((..(((((((((.&.)))))))))..))))))-)))	GGGAGAGGUAUUGAGAUGGGUG&AAUCUAUUUCUUUAUCUC-CCC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a551_TRINITY_DN9738_c1_g1_106_TPlot.pdf
TRINITY_DN9740_c1_g2:224	si_s78	TRINITY_DN9740_c1_g2	213	233	224	-26.20	-17.60	0.67175572519084	7	1-16,233-218	17-21,217-213[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUCACGAAGGAGAGAAAAAAG&UUUUUUUCUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9740_c1_g2_224_TPlot.pdf
TRINITY_DN9740_c1_g2:96	si_s71	TRINITY_DN9740_c1_g2	85	105	96	-25.70	-19.40	0.754863813229572	5.5	3-12,103-94;14-21,92-85	1-2,105-104[UP5];13-13,93-93[SIL]	((((((((.((((((((((..&..)))))))))).))))))))	AGGAGAGAUAAAAAAUAGGUU&CUUCUAUUUUUUUUCUUUCCU	4	0.999991392983814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9740_c1_g2_96_TPlot.pdf
TRINITY_DN9743_c0_g2:1002	si_a206	TRINITY_DN9743_c0_g2	991	1011	1002	-23.90	-16.30	0.682008368200837	8	3-18,1009-994	1-2,1011-1010[UP5];19-21,993-991[UP3]	...((((((((((((((((..&..))))))))))))))))...	AGAGAUUGGUUGAUUUAUUUG&CUAAUAAAUCGACUAAUUAAA	4	0.733161314653598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a206_TRINITY_DN9743_c0_g2_1002_TPlot.pdf
TRINITY_DN9743_c0_g2:1003	si_a205	TRINITY_DN9743_c0_g2	992	1012	1003	-24.70	-16.30	0.659919028340081	9	4-19,1009-994	1-3,1012-1010[UP5];20-21,993-992[UP3]	..((((((((((((((((...&...))))))))))))))))..	GAGAUUGGUUGAUUUAUUUGA&ACUAAUAAAUCGACUAAUUAA	4	0.843986433797027	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN9743_c0_g2_1003_TPlot.pdf
TRINITY_DN9743_c0_g2:26	si_a546	TRINITY_DN9743_c0_g2	12	35	26	-28.60	-20.12	0.703496503496504	6	1-14,35-22;17-21,16-12	15-16,21-17[AILt]	(((((.....((((((((((((((&))))))))))))))---..)))))	GAUAAUCUGUAAAUAGAUUGAGCC&GGUUCAAUCUAUUU---CUUUAUC	4	0.946667798910791	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a546_TRINITY_DN9743_c0_g2_26_TPlot.pdf
TRINITY_DN9743_c0_g2:27	si_a545	TRINITY_DN9743_c0_g2	16	36	27	-28.10	-18.60	0.661921708185053	8	2-15,35-22	1-1,36-36[UP5];16-21,21-16[UP3]	......((((((((((((((.&.))))))))))))))......	AUCUGUAAAUAGAUUGAGCCC&CGGUUCAAUCUAUUUCUUUAU	4	0.99991663427952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a545_TRINITY_DN9743_c0_g2_27_TPlot.pdf
TRINITY_DN9745_c0_g1:980	si_a455	TRINITY_DN9745_c0_g1	969	989	980	-21.10	-16.30	0.772511848341232	7	2-19,988-971	1-1,989-989[UP5];20-21,970-969[UP3]	..((((((((((((((((((.&.))))))))))))))))))..	UAGUUGUAUAUAAUAAUAGUA&AAUUGUUGUUAUAUAUAAUAU	4	0.840732476617445	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a455_TRINITY_DN9745_c0_g1_980_TPlot.pdf
TRINITY_DN9745_c0_g1:981	si_a454	TRINITY_DN9745_c0_g1	970	990	981	-21.30	-16.30	0.765258215962441	8	3-20,988-971	1-2,990-989[UP5];21-21,970-970[UP3]	.((((((((((((((((((..&..)))))))))))))))))).	AGUUGUAUAUAAUAAUAGUAA&UAAUUGUUGUUAUAUAUAAUA	4	0.827023670496631	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a454_TRINITY_DN9745_c0_g1_981_TPlot.pdf
TRINITY_DN9745_c0_g4:119	si_a814	TRINITY_DN9745_c0_g4	108	128	119	-32.90	-21.50	0.653495440729483	9	4-17,125-112	1-3,128-126[UP5];18-21,111-108[UP3]	....((((((((((((((...&...))))))))))))))....	AGCACUUUCUUCUUCUUCAAU&AGCGAAGAAGAAGAAAGGAAA	4	0.9975383575215	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a814_TRINITY_DN9745_c0_g4_119_TPlot.pdf
TRINITY_DN9746_c0_g1:423	si_s807	TRINITY_DN9746_c0_g1	412	432	423	-28.90	-19.00	0.657439446366782	7.5	1-4,432-429;6-17,427-416	5-5,428-428[SIL];18-21,415-412[UP3]	....((((((((((((.((((&)))).))))))))))))....	CAACGAAAGGUAACGGUGAUA&UAUCUUCGUUACCUUUUCUUA	4	0.999999999993905	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN9746_c0_g1_423_TPlot.pdf
TRINITY_DN9746_c0_g1:426	si_s804	TRINITY_DN9746_c0_g1	415	435	426	-27.90	-19.90	0.71326164874552	7.5	3-7,433-429;9-20,427-416	1-2,435-434[UP5];8-8,428-428[SIL];21-21,415-415[UP3]	.((((((((((((.(((((..&..))))).)))))))))))).	CGAAAGGUAACGGUGAUAAUA&UUUUAUCUUCGUUACCUUUUC	3	0.999587752437111	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN9746_c0_g1_426_TPlot.pdf
TRINITY_DN9746_c0_g1:428	si_s802	TRINITY_DN9746_c0_g1	417	437	428	-26.40	-19.40	0.734848484848485	5	1-3,437-435;5-9,433-429;11-21,427-417	4-4,434-434[SIL];10-10,428-428[SIL]	(((((((((((.(((((.(((&))).))))).)))))))))))	AAAGGUAACGGUGAUAAUAUA&UAUUUUAUCUUCGUUACCUUU	3	0.990686887307561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN9746_c0_g1_428_TPlot.pdf
TRINITY_DN9746_c0_g2:1150	si_s810	TRINITY_DN9746_c0_g2	1139	1159	1150	-27.90	-20.00	0.716845878136201	8.5	2-5,1158-1155;7-21,1153-1139	1-1,1159-1159[UP5];6-6,1154-1154[SIL]	(((((((((((((((.((((.&.)))).)))))))))))))))	UAUUGAGAAGGGGUGUUGGAU&CUUCGUUACCUUUUCUUAAUA	4	0.994824408012102	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN9746_c0_g2_1150_TPlot.pdf
TRINITY_DN9747_c1_g1:1843	si_a817	TRINITY_DN9747_c1_g1	1832	1852	1843	-30.90	-21.30	0.689320388349515	3.5	1-12,1852-1841;13-17,1839-1835;19-21,1834-1832	x-x,1840-1840[BULt];18-18,x-x[BULq]	(((-(((((.((((((((((((&))))))))))))-))))).)))	UUC-UUCUUCUUCUUCUUCUUC&GAAGAAGAAGAA-AGGAAAGAA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a817_TRINITY_DN9747_c1_g1_1843_TPlot.pdf
TRINITY_DN9748_c0_g1:1056	si_s219	TRINITY_DN9748_c0_g1	1043	1065	1056	-33.80	-23.10	0.683431952662722	8.5	1-6,1065-1060;9-14,1057-1052;15-19,1049-1045	7-8,1059-1058[SIL];x-x,1051-1050[BULt];20-21,1044-1043[UP3]	..(((((..((((((..((((((&))))))..))))))--)))))..	UGAUUCGACCGCGGUGGCGAACA&UGUUCGAAACCGCG--UGAAUAA	4	0.562069195284946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s219_TRINITY_DN9748_c0_g1_1056_TPlot.pdf
TRINITY_DN9748_c0_g1:1057	si_s218	TRINITY_DN9748_c0_g1	1044	1066	1057	-35.50	-24.40	0.687323943661972	8	1-7,1066-1060;10-15,1057-1052;16-20,1049-1045	8-9,1059-1058[SIL];x-x,1051-1050[BULt];21-21,1044-1044[UP3]	.(((((..((((((..(((((((&)))))))..))))))--))))).	GAUUCGACCGCGGUGGCGAACAU&GUGUUCGAAACCGCG--UGAAUA	3	0.731754042888127	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s218_TRINITY_DN9748_c0_g1_1057_TPlot.pdf
TRINITY_DN9748_c0_g1:1602	si_a43	TRINITY_DN9748_c0_g1	1591	1613	1602	-42.30	-27.80	0.657210401891253	11	2-6,1612-1608;8-16,1604-1596;18-20,1594-1592	1-1,1613-1613[UP5];7-7,1607-1605[AILt];17-17,1595-1595[SIL];21-21,1591-1591[UP3]	.(((.(((((((((...(((((.&.)))))--.))))))))).))).	GCGAGUCCUGGAUCGCAACCGGG&ACCGGU--AGGUCUAGGAGUCGA	2	0.815973634570725	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a43_TRINITY_DN9748_c0_g1_1602_TPlot.pdf
TRINITY_DN9748_c0_g1:1605	si_a253	TRINITY_DN9748_c0_g1	1593	1614	1605	-41.20	-26.90	0.652912621359223	8.5	1-5,1614-1610;7-10,1608-1605;11-13,1603-1601;15-19,1599-1595	6-6,1609-1609[SIL];x-x,1604-1604[BULt];14-14,1600-1600[SIL];20-21,1594-1593[UP3]	..(((((.(((.((((.(((((&))))).))))-))).)))))..	GAGUCCUGGAUCGCAACCGGGG&CCCCGAUUGU-AUCGAGGGCAA	2	0.833414307439233	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a253_TRINITY_DN9748_c0_g1_1605_TPlot.pdf
TRINITY_DN9748_c0_g1:1606	si_a252	TRINITY_DN9748_c0_g1	1594	1615	1606	-43.50	-29.90	0.68735632183908	7.5	1-6,1615-1610;8-11,1608-1605;12-14,1603-1601;16-20,1599-1595	7-7,1609-1609[SIL];x-x,1604-1604[BULt];15-15,1600-1600[SIL];21-21,1594-1594[UP3]	.(((((.(((.((((.((((((&)))))).))))-))).))))).	AGUCCUGGAUCGCAACCGGGGG&CCCCCGAUUGU-AUCGAGGGCA	2	0.435899496863705	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a252_TRINITY_DN9748_c0_g1_1606_TPlot.pdf
TRINITY_DN9748_c0_g1:1607	si_a251	TRINITY_DN9748_c0_g1	1595	1616	1607	-43.80	-30.80	0.703196347031964	6.5	1-7,1616-1610;9-12,1608-1605;13-15,1603-1601;17-21,1599-1595	8-8,1609-1609[SIL];x-x,1604-1604[BULt];16-16,1600-1600[SIL]	(((((.(((.((((.(((((((&))))))).))))-))).)))))	GUCCUGGAUCGCAACCGGGGGA&UCCCCCGAUUGU-AUCGAGGGC	2	0.239527458907398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a251_TRINITY_DN9748_c0_g1_1607_TPlot.pdf
TRINITY_DN9748_c0_g1:1608	si_a250	TRINITY_DN9748_c0_g1	1596	1617	1608	-41.50	-28.70	0.691566265060241	5	1-8,1617-1610;10-13,1608-1605;14-16,1603-1601;18-21,1599-1596	9-9,1609-1609[SIL];x-x,1604-1604[BULt];17-17,1600-1600[SIL]	((((.(((.((((.((((((((&)))))))).))))-))).))))	UCCUGGAUCGCAACCGGGGGAU&AUCCCCCGAUUGU-AUCGAGGG	2	0.294248557071516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a250_TRINITY_DN9748_c0_g1_1608_TPlot.pdf
TRINITY_DN9748_c0_g1:1609	si_a249	TRINITY_DN9748_c0_g1	1597	1618	1609	-41.10	-28.00	0.681265206812652	5.5	2-9,1617-1610;11-14,1608-1605;15-17,1603-1601;19-21,1599-1597	1-1,1618-1618[UP5];10-10,1609-1609[SIL];x-x,1604-1604[BULt];18-18,1600-1600[SIL]	(((.(((.((((.((((((((.&.)))))))).))))-))).)))	CCUGGAUCGCAACCGGGGGAUG&GAUCCCCCGAUUGU-AUCGAGG	2	0.320114320832598	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a249_TRINITY_DN9748_c0_g1_1609_TPlot.pdf
TRINITY_DN9748_c0_g1:1610	si_a248	TRINITY_DN9748_c0_g1	1598	1620	1610	-40.20	-26.60	0.661691542288557	6.5	1-2,1620-1619;3-10,1617-1610;12-15,1608-1605;16-18,1603-1601;20-21,1599-1598	x-x,1618-1618[BULt];11-11,1609-1609[SIL];x-x,1604-1604[BULt];19-19,1600-1600[SIL]	((.(((.((((.((((((((.((&))-)))))))).))))-))).))	CUGGAUCGCAACCGGGGGAUGCG&CG-AUCCCCCGAUUGU-AUCGAG	2	0.591850894205601	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a248_TRINITY_DN9748_c0_g1_1610_TPlot.pdf
TRINITY_DN9748_c0_g1:1612	si_a246	TRINITY_DN9748_c0_g1	1600	1622	1612	-38.60	-25.70	0.66580310880829	6.5	1-4,1622-1619;5-12,1617-1610;14-17,1608-1605;18-20,1603-1601	x-x,1618-1618[BULt];13-13,1609-1609[SIL];x-x,1604-1604[BULt];21-21,1600-1600[UP3]	.(((.((((.((((((((.((((&))))-)))))))).))))-))).	GGAUCGCAACCGGGGGAUGCGGA&UUCG-AUCCCCCGAUUGU-AUCG	2	0.685726559199199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a246_TRINITY_DN9748_c0_g1_1612_TPlot.pdf
TRINITY_DN9748_c0_g1:1620	si_a499	TRINITY_DN9748_c0_g1	1609	1628	1620	-35.20	-23.80	0.676136363636364	9.5	1-8,1628-1621;10-12,1620-1618;14-21,1616-1609	9-9,x-x[BULq];13-13,1617-1617[SIL]	((((((((.(((-((((((((&)))))))).))).))))))))	CCGGGGGAUGCG-GAGGCGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.999999988356151	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN9748_c0_g1_1620_TPlot.pdf
TRINITY_DN9748_c0_g1:2777	si_a515	TRINITY_DN9748_c0_g1	2767	2786	2777	-38.60	-26.00	0.673575129533679	8.5	1-4,2786-2783;6-10,2781-2777;13-21,2775-2767	5-5,2782-2782[SIL];11-12,2776-2776[AILq]	(((((((((.-(((((.((((&)))).)))))..)))))))))	GUGUCCGUCA-ACGUUGCGAG&CUUGGAAUGUAAGGCGGACAC	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a515_TRINITY_DN9748_c0_g1_2777_TPlot.pdf
TRINITY_DN9748_c0_g1:2779	si_a513	TRINITY_DN9748_c0_g1	2769	2788	2779	-39.50	-25.90	0.655696202531646	6.5	1-6,2788-2783;8-12,2781-2777;15-21,2775-2769	7-7,2782-2782[SIL];13-14,2776-2776[AILq]	(((((((.-(((((.((((((&)))))).)))))..)))))))	GUCCGUCA-ACGUUGCGAGGA&UCCUUGGAAUGUAAGGCGGAC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a513_TRINITY_DN9748_c0_g1_2779_TPlot.pdf
TRINITY_DN9748_c0_g1:3005	si_a312	TRINITY_DN9748_c0_g1	2994	3014	3005	-31.20	-21.90	0.701923076923077	5.5	1-8,3014-3007;10-14,3005-3001;16-21,2999-2994	9-9,3006-3006[SIL];15-15,3000-3000[SIL]	((((((.(((((.((((((((&)))))))).))))).))))))	AAGUCAAGGAUACAUCUGAGC&GCUUGGAUUUAUCCAUGAUUU	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a312_TRINITY_DN9748_c0_g1_3005_TPlot.pdf
TRINITY_DN9748_c0_g1:794	si_a624	TRINITY_DN9748_c0_g1	785	803	794	-32.30	-22.00	0.681114551083591	9.5	1-2,803-802;4-10,800-794;13-20,793-786	3-3,801-801[SIL];11-12,x-x[BULq];21-21,785-785[UP3]	.((((((((--(((((((.((&)).)))))))..)))))))).	UGAUCGACA--GUGCGCCGAG&CUAGGCGUAUUAUGUCGAUUU	3	0.902513758324095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN9748_c0_g1_794_TPlot.pdf
TRINITY_DN9748_c0_g1:795	si_a623	TRINITY_DN9748_c0_g1	786	804	795	-33.10	-22.00	0.664652567975831	8.5	2-3,803-802;5-11,800-794;14-21,793-786	1-1,804-804[UP5];4-4,801-801[SIL];12-13,x-x[BULq]	((((((((--(((((((.((.&.)).)))))))..))))))))	GAUCGACA--GUGCGCCGAGA&ACUAGGCGUAUUAUGUCGAUU	2	0.835474808512046	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a623_TRINITY_DN9748_c0_g1_795_TPlot.pdf
TRINITY_DN9749_c0_g1:1635	si_a787	TRINITY_DN9749_c0_g1	1624	1648	1635	-26.30	-18.30	0.695817490494297	13	1-5,1648-1644;6-14,1639-1631;17-21,1628-1624	x-x,1643-1640[BULt];15-16,1630-1629[SIL]	(((((..(((((((((....(((((&)))))----)))))))))..)))))	UGGGAUUUGGAAGAAUUGUUGGAAG&CUUCU----AUUUUUCUAUUUUCCA	4	0.999999955453596	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN9749_c0_g1_1635_TPlot.pdf
TRINITY_DN9749_c0_g1:1638	si_a784	TRINITY_DN9749_c0_g1	1627	1651	1638	-24.70	-16.10	0.651821862348178	14	1-8,1651-1644;9-17,1639-1631;20-21,1628-1627	x-x,1643-1640[BULt];18-19,1630-1629[SIL]	((..(((((((((....((((((((&))))))))----)))))))))..))	GAUUUGGAAGAAUUGUUGGAAGGGU&ACUCUUCU----AUUUUUCUAUUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9749_c0_g1_1638_TPlot.pdf
TRINITY_DN9749_c0_g1:396	si_a407	TRINITY_DN9749_c0_g1	385	405	396	-19.80	-13.00	0.656565656565657	10	1-2,405-404;4-17,402-389	3-3,403-403[SIL];18-21,388-385[UP3]	....((((((((((((((.((&)).))))))))))))))....	CAGAAAAUAUGGGCAAGAGAA&UUGUUUUGUUUAUAUUUAAAU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN9749_c0_g1_396_TPlot.pdf
TRINITY_DN9749_c0_g1:397	si_a406	TRINITY_DN9749_c0_g1	386	406	397	-19.80	-13.00	0.656565656565657	10	2-3,405-404;5-18,402-389	1-1,406-406[UP5];4-4,403-403[SIL];19-21,388-386[UP3]	...((((((((((((((.((.&.)).))))))))))))))...	AGAAAAUAUGGGCAAGAGAAA&AUUGUUUUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN9749_c0_g1_397_TPlot.pdf
TRINITY_DN9749_c0_g1:500	si_a409	TRINITY_DN9749_c0_g1	488	509	500	-19.50	-12.70	0.651282051282051	5.5	1-9,509-501;11-16,499-494;17-21,492-488	10-10,500-500[SIL];x-x,493-493[BULt]	(((((.((((((.(((((((((&))))))))).))))))-)))))	UUGUUAUAAAUGAAGACAAAAC&GUUUUGUUUAUAUUUA-AAUAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN9749_c0_g1_500_TPlot.pdf
TRINITY_DN9749_c1_g1:25	si_a734	TRINITY_DN9749_c1_g1	14	34	25	-42.40	-29.90	0.705188679245283	8.5	1-4,34-31;6-7,29-28;10-20,25-15	5-5,30-30[SIL];8-9,27-26[SIL];21-21,14-14[UP3]	.(((((((((((..((.((((&)))).))..))))))))))).	CUGGCCAGGGGUUUAGUUGUU&GGCAUCUUUACCCCUGGCCAU	4	0.678683849055613	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a734_TRINITY_DN9749_c1_g1_25_TPlot.pdf
TRINITY_DN9749_c1_g4:1927	si_s481	TRINITY_DN9749_c1_g4	1916	1937	1927	-23.00	-15.80	0.68695652173913	12.5	1-6,1937-1932;11-20,1926-1917	7-10,1931-1927[AILt];21-21,1916-1916[UP3]	.((((((((((.....((((((&))))))-....)))))))))).	AAUUUAGAUGAUCCCGAGGAUC&GAUCCU-AUAUUUAUUUAAAUA	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN9749_c1_g4_1927_TPlot.pdf
TRINITY_DN9749_c1_g4:2120	si_a841	TRINITY_DN9749_c1_g4	2109	2132	2120	-29.20	-19.20	0.657534246575342	13.5	4-9,2129-2124;10-21,2120-2109	1-3,2132-2130[UP5];x-x,2123-2121[BULt]	((((((((((((...((((((...&...))))))---))))))))))))	UCGAGUUAGCAGAAUUUUCUAAGG&AAAUAGAAG---UUGCUAACUUGA	3	0.974887328334403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a841_TRINITY_DN9749_c1_g4_2120_TPlot.pdf
TRINITY_DN9749_c1_g4:862	si_a474	TRINITY_DN9749_c1_g4	851	871	862	-23.60	-15.90	0.673728813559322	11.5	6-21,866-851	1-5,871-867[UP5]	((((((((((((((((.....&.....))))))))))))))))	UCUAUGUAAUAAUAGUGAGAA&AUGUAAUUAUUGUUAUAUAGA	4	0.988181712882095	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a474_TRINITY_DN9749_c1_g4_862_TPlot.pdf
TRINITY_DN974_c0_g1:185	si_a410	TRINITY_DN974_c0_g1	174	194	185	-17.80	-13.30	0.747191011235955	7	1-15,194-180	16-21,179-174[UP3]	......(((((((((((((((&)))))))))))))))......	UCCCCGUAAAUAUAAACAGAA&UUUUGUUUAUAUUUAAAUAAA	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN974_c0_g1_185_TPlot.pdf
TRINITY_DN974_c0_g1:186	si_a409	TRINITY_DN974_c0_g1	175	195	186	-19.50	-13.30	0.682051282051282	7	2-16,194-180	1-1,195-195[UP5];17-21,179-175[UP3]	.....(((((((((((((((.&.))))))))))))))).....	CCCCGUAAAUAUAAACAGAAG&GUUUUGUUUAUAUUUAAAUAA	4	0.999999999220709	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN974_c0_g1_186_TPlot.pdf
TRINITY_DN9759_c0_g2:3063	si_s9	TRINITY_DN9759_c0_g2	3052	3072	3063	-22.90	-15.10	0.65938864628821	10.5	3-17,3070-3056	1-2,3072-3071[UP5];18-21,3055-3052[UP3]	....(((((((((((((((..&..)))))))))))))))....	AAACAUGGUAAUGAUGGGUCU&UUACUUAUUAUUACUAUAUUG	3	0.999596014014247	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s9_TRINITY_DN9759_c0_g2_3063_TPlot.pdf
TRINITY_DN9759_c0_g2:3066	si_s6	TRINITY_DN9759_c0_g2	3055	3075	3066	-21.70	-15.10	0.695852534562212	13.5	6-20,3070-3056	1-5,3075-3071[UP5];21-21,3055-3055[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CAUGGUAAUGAUGGGUCUAUU&AUAUUACUUAUUAUUACUAUA	4	0.999465650824422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s6_TRINITY_DN9759_c0_g2_3066_TPlot.pdf
TRINITY_DN9759_c0_g2:3067	si_s5	TRINITY_DN9759_c0_g2	3056	3076	3067	-21.70	-14.90	0.686635944700461	14	7-21,3070-3056	1-6,3076-3071[UP5]	(((((((((((((((......&......)))))))))))))))	AUGGUAAUGAUGGGUCUAUUU&UAUAUUACUUAUUAUUACUAU	3	0.99957932190942	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s5_TRINITY_DN9759_c0_g2_3067_TPlot.pdf
TRINITY_DN9759_c0_g2:892	si_a400	TRINITY_DN9759_c0_g2	881	901	892	-22.80	-15.50	0.679824561403509	5	2-6,900-896;8-11,894-891;13-21,889-881	1-1,901-901[UP5];7-7,895-895[SIL];12-12,890-890[SIL]	(((((((((.((((.(((((.&.))))).)))).)))))))))	UAUAAACAAUACAAGUCUAUC&UAUAGAAUUGUUUUGUUUAUA	4	0.999999423956054	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a400_TRINITY_DN9759_c0_g2_892_TPlot.pdf
TRINITY_DN9764_c0_g1:2108	si_s795	TRINITY_DN9764_c0_g1	2097	2117	2108	-30.30	-20.10	0.663366336633663	6.5	2-5,2116-2113;8-20,2110-2098	1-1,2117-2117[UP5];6-7,2112-2111[SIL];21-21,2097-2097[UP3]	.(((((((((((((..((((.&.))))..))))))))))))).	CUGAAGAUAAAAUAGCAGCUG&AAGCUCGUAUUUUAUCUUCGU	4	0.999982990439741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s795_TRINITY_DN9764_c0_g1_2108_TPlot.pdf
TRINITY_DN9764_c0_g1:2411	si_s798	TRINITY_DN9764_c0_g1	2400	2425	2411	-29.30	-19.60	0.668941979522184	11.5	1-3,2425-2423;4-5,2421-2420;6-21,2415-2400	x-x,2422-2422[BULt];x-x,2419-2416[BULt]	((((((((((((((((....((.(((&)))-))----))))))))))))))))	GUAAUGAAGAUAAAAUUGCAGCUGAG&CUC-GU----AUUUUAUCUUCGUUAC	4	0.999556246920337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN9764_c0_g1_2411_TPlot.pdf
TRINITY_DN9764_c0_g1:2412	si_s797	TRINITY_DN9764_c0_g1	2401	2426	2412	-30.00	-20.80	0.693333333333333	11.5	1-4,2426-2423;5-6,2421-2420;7-21,2415-2401	x-x,2422-2422[BULt];x-x,2419-2416[BULt]	(((((((((((((((....((.((((&))))-))----)))))))))))))))	UAAUGAAGAUAAAAUUGCAGCUGAGC&GCUC-GU----AUUUUAUCUUCGUUA	3	0.999524992270224	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN9764_c0_g1_2412_TPlot.pdf
TRINITY_DN9764_c0_g1:3016	si_a17	TRINITY_DN9764_c0_g1	3005	3025	3016	-24.30	-16.40	0.674897119341564	8.5	3-5,3023-3021;7-20,3019-3006	1-2,3025-3024[UP5];6-6,3020-3020[SIL];21-21,3005-3005[UP3]	.((((((((((((((.(((..&..))).)))))))))))))).	UACUGAAAAUGGAUAUGCUGA&AAAGCCUAUUUAUUUUUAGUU	3	0.999999461173891	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a17_TRINITY_DN9764_c0_g1_3016_TPlot.pdf
TRINITY_DN9764_c0_g1:3112	si_a157	TRINITY_DN9764_c0_g1	3097	3121	3112	-29.00	-20.30	0.7	13	1-11,3121-3111;12-19,3106-3099	x-x,3110-3107[BULt];20-21,3098-3097[UP3]	..((((((((....(((((((((((&)))))))))))----))))))))..	GAGAAUGGAUAUCCUGACCUUGGAG&UUUUAAGGUCA----AUCUAUUCAC	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a157_TRINITY_DN9764_c0_g1_3112_TPlot.pdf
TRINITY_DN9764_c0_g1:3114	si_a155	TRINITY_DN9764_c0_g1	3099	3123	3114	-28.90	-20.00	0.69204152249135	10.5	3-13,3121-3111;14-21,3106-3099	1-2,3123-3122[UP5];x-x,3110-3107[BULt]	((((((((....(((((((((((..&..)))))))))))----))))))))	GAAUGGAUAUCCUGACCUUGGAGGU&UGUUUUAAGGUCA----AUCUAUUC	3	0.726268370750825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a155_TRINITY_DN9764_c0_g1_3114_TPlot.pdf
TRINITY_DN9764_c0_g1:3405	si_a353	TRINITY_DN9764_c0_g1	3394	3414	3405	-24.00	-16.10	0.670833333333333	10.5	4-8,3411-3407;10-20,3405-3395	1-3,3414-3412[UP5];9-9,3406-3406[SIL];21-21,3394-3394[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	GGAUCAAGAUGGCGUUAAAGU&AUAUUAAUUCUAUUUUGAUCG	3	0.997345373443089	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a353_TRINITY_DN9764_c0_g1_3405_TPlot.pdf
TRINITY_DN9764_c0_g1:3406	si_a352	TRINITY_DN9764_c0_g1	3395	3415	3406	-22.50	-15.50	0.688888888888889	11.5	5-9,3411-3407;11-21,3405-3395	1-4,3415-3412[UP5];10-10,3406-3406[SIL]	(((((((((((.(((((....&....))))).)))))))))))	GAUCAAGAUGGCGUUAAAGUA&AAUAUUAAUUCUAUUUUGAUC	3	0.996178307117693	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a352_TRINITY_DN9764_c0_g1_3406_TPlot.pdf
TRINITY_DN9764_c0_g1:3976	si_s13	TRINITY_DN9764_c0_g1	3961	3985	3976	-22.90	-16.00	0.698689956331878	10	1-11,3985-3975;12-20,3970-3962	x-x,3974-3971[BULt];21-21,3961-3961[UP3]	.(((((((((....(((((((((((&)))))))))))----))))))))).	AGAUCAAUGUGUUGAGUAAUAAUAA&UUAUUAUUACU----AUAUUGAUUG	3	0.980303396036286	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s13_TRINITY_DN9764_c0_g1_3976_TPlot.pdf
TRINITY_DN9764_c0_g1:3977	si_s12	TRINITY_DN9764_c0_g1	3962	3986	3977	-22.80	-16.20	0.710526315789474	10	2-12,3985-3975;13-21,3970-3962	1-1,3986-3986[UP5];x-x,3974-3971[BULt]	(((((((((....(((((((((((.&.)))))))))))----)))))))))	GAUCAAUGUGUUGAGUAAUAAUAAA&CUUAUUAUUACU----AUAUUGAUU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s12_TRINITY_DN9764_c0_g1_3977_TPlot.pdf
TRINITY_DN976_c0_g1:1110	si_s80	TRINITY_DN976_c0_g1	1093	1119	1110	-28.20	-18.50	0.656028368794326	12.5	1-10,1119-1110;11-16,1105-1100;17-21,1097-1093	x-x,1109-1106[BULt];x-x,1099-1098[BULt]	(((((..((((((....((((((((((&))))))))))----))))))--)))))	GAAGACUGGAAAGUAACGAGAGAGAAA&UUUUUCUUUC----CUUUCU--UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN976_c0_g1_1110_TPlot.pdf
TRINITY_DN976_c0_g1:1116	si_s74	TRINITY_DN976_c0_g1	1101	1125	1116	-25.00	-17.50	0.7	8.5	2-16,1124-1110;17-21,1105-1101	1-1,1125-1125[UP5];x-x,1109-1106[BULt]	(((((....(((((((((((((((.&.)))))))))))))))----)))))	GAAAGUAACGAGAGAGAAAGAAUGA&CUAUUUUUUUUCUUUC----CUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN976_c0_g1_1116_TPlot.pdf
TRINITY_DN976_c0_g1:493	si_s70	TRINITY_DN976_c0_g1	481	502	493	-25.80	-18.20	0.705426356589147	5.5	2-15,501-488;17-21,485-481	1-1,502-502[UP5];16-16,487-486[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	GGAAAUAAGAAAAGAUGGAAGG&ACUUCUAUUUUUUUU-CUUUCC	3	0.999999999881406	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN976_c0_g1_493_TPlot.pdf
TRINITY_DN976_c0_g1:672	si_s73	TRINITY_DN976_c0_g1	661	682	672	-24.00	-15.70	0.654166666666667	8.5	1-3,682-680;4-17,678-665	x-x,679-679[BULt];18-21,664-661[UP3]	....((((((((((((((.(((&)))-))))))))))))))....	UAACGAGAGAGAAAGAAUGAGA&UCU-AUUUUUUUUCUUUCCUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN976_c0_g1_672_TPlot.pdf
TRINITY_DN9771_c0_g1:1060	si_a408	TRINITY_DN9771_c0_g1	1049	1069	1060	-20.10	-13.40	0.666666666666667	8.5	3-6,1067-1064;8-20,1062-1050	1-2,1069-1068[UP5];7-7,1063-1063[SIL];21-21,1049-1049[UP3]	.(((((((((((((.((((..&..)))).))))))))))))).	GAUUUAGAUAUAGAGGAAAAU&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999993381	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN9771_c0_g1_1060_TPlot.pdf
TRINITY_DN9771_c0_g1:1290	si_a787	TRINITY_DN9771_c0_g1	1279	1299	1290	-26.30	-20.50	0.779467680608365	5	2-7,1298-1293;9-21,1291-1279	1-1,1299-1299[UP5];8-8,1292-1292[SIL]	(((((((((((((.((((((.&.)))))).)))))))))))))	UGGAAAAUAGGAACAUGGAAC&CUUCUAUUUUUCUAUUUUCCA	4	0.92731204556143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN9771_c0_g1_1290_TPlot.pdf
TRINITY_DN9771_c0_g1:2081	si_a225	TRINITY_DN9771_c0_g1	2070	2090	2081	-27.50	-18.50	0.672727272727273	7	2-5,2089-2086;7-9,2084-2082;11-19,2080-2072	1-1,2090-2090[UP5];6-6,2085-2085[SIL];10-10,2081-2081[SIL];20-21,2071-2070[UP3]	..(((((((((.(((.((((.&.)))).))).)))))))))..	GAGAUUAUAGACACAAGAGUG&AACUCAUGUUUCUAUAAUCAA	3	0.9336410994726	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a225_TRINITY_DN9771_c0_g1_2081_TPlot.pdf
TRINITY_DN9771_c0_g1:2082	si_a224	TRINITY_DN9771_c0_g1	2071	2091	2082	-27.40	-18.50	0.675182481751825	8	3-6,2089-2086;8-10,2084-2082;12-20,2080-2072	1-2,2091-2090[UP5];7-7,2085-2085[SIL];11-11,2081-2081[SIL];21-21,2071-2071[UP3]	.(((((((((.(((.((((..&..)))).))).))))))))).	AGAUUAUAGACACAAGAGUGA&AAACUCAUGUUUCUAUAAUCA	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a224_TRINITY_DN9771_c0_g1_2082_TPlot.pdf
TRINITY_DN9771_c0_g1:2083	si_a223	TRINITY_DN9771_c0_g1	2072	2092	2083	-27.10	-18.00	0.664206642066421	9	4-7,2089-2086;9-11,2084-2082;13-21,2080-2072	1-3,2092-2090[UP5];8-8,2085-2085[SIL];12-12,2081-2081[SIL]	(((((((((.(((.((((...&...)))).))).)))))))))	GAUUAUAGACACAAGAGUGAG&UAAACUCAUGUUUCUAUAAUC	4	0.950894509044064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a223_TRINITY_DN9771_c0_g1_2083_TPlot.pdf
TRINITY_DN9771_c0_g1:2317	si_a320	TRINITY_DN9771_c0_g1	2306	2326	2317	-24.40	-16.20	0.663934426229508	7	1-16,2326-2311	17-21,2310-2306[UP3]	.....((((((((((((((((&)))))))))))))))).....	AUCUUGAAAAAUUAUGGAUAG&UUAUCCAUGAUUUUUUUAUUC	2	0.999963954709493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a320_TRINITY_DN9771_c0_g1_2317_TPlot.pdf
TRINITY_DN9771_c0_g1:2322	si_a315	TRINITY_DN9771_c0_g1	2311	2332	2322	-27.00	-17.80	0.659259259259259	6	1-6,2332-2327;7-21,2325-2311	x-x,2326-2326[BULt]	(((((((((((((((.((((((&))))))-)))))))))))))))	GAAAAAUUAUGGAUAGGAUUUA&UGGAUU-UAUCCAUGAUUUUUU	4	0.9999993743736	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a315_TRINITY_DN9771_c0_g1_2322_TPlot.pdf
TRINITY_DN9771_c0_g1:2716	si_a786	TRINITY_DN9771_c0_g1	2698	2725	2716	-26.60	-19.80	0.744360902255639	10.5	2-16,2724-2710;17-21,2702-2698	1-1,2725-2725[UP5];x-x,2709-2703[BULt]	(((((.......(((((((((((((((.&.)))))))))))))))-------)))))	GGAAAUGAAAUUAUGGAAAGAUGGAAGG&UCUUCUAUUUUUCUAU-------UUUCC	4	0.996042537413053	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN9771_c0_g1_2716_TPlot.pdf
TRINITY_DN9771_c0_g1:2718	si_a784	TRINITY_DN9771_c0_g1	2707	2728	2718	-24.70	-19.00	0.769230769230769	7.5	1-4,2728-2725;5-18,2723-2710	x-x,2724-2724[BULt];19-21,2709-2707[UP3]	...((((((((((((((.((((&))))-))))))))))))))...	AUUAUGGAAAGAUGGAAGGAGU&ACUC-UUCUAUUUUUCUAUUUU	4	0.996202593472519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a784_TRINITY_DN9771_c0_g1_2718_TPlot.pdf
TRINITY_DN9771_c0_g1:3760	si_a410	TRINITY_DN9771_c0_g1	3749	3769	3760	-17.80	-13.20	0.741573033707865	8	1-15,3769-3755	16-21,3754-3749[UP3]	......(((((((((((((((&)))))))))))))))......	UCAAAAUAAAUAUAGACAAGA&UUUUGUUUAUAUUUAAAUAAA	2	0.988388058632615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9771_c0_g1_3760_TPlot.pdf
TRINITY_DN9771_c0_g1:3762	si_a408	TRINITY_DN9771_c0_g1	3751	3771	3762	-20.10	-17.70	0.880597014925373	6	1-17,3771-3755	18-21,3754-3751[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAAAUAAAUAUAGACAAGACA&UGUUUUGUUUAUAUUUAAAUA	4	0.250982571279562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN9771_c0_g1_3762_TPlot.pdf
TRINITY_DN9771_c0_g1:654	si_s68	TRINITY_DN9771_c0_g1	643	663	654	-23.10	-15.40	0.666666666666667	11	4-8,660-656;11-21,653-643	1-3,663-661[UP5];9-10,655-654[SIL]	(((((((((((..(((((...&...)))))..)))))))))))	AGAGAGGGAAAUGAGAAGGAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9771_c0_g1_654_TPlot.pdf
TRINITY_DN9773_c0_g1:1347	si_a83	TRINITY_DN9773_c0_g1	1337	1356	1347	-24.50	-16.60	0.677551020408163	5	1-15,1356-1342;18-21,1340-1337	16-17,1341-1341[AILq]	((((.-(((((((((((((((&)))))))))))))))..))))	ACCUA-UUUUAAUGAUGAGAG&UUUUCAUUAUUAAGAAAAGGU	2	0.796707012153786	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a83_TRINITY_DN9773_c0_g1_1347_TPlot.pdf
TRINITY_DN9774_c0_g1:21	si_s743	TRINITY_DN9774_c0_g1	10	30	21	-29.00	-19.50	0.672413793103448	6.5	1-8,30-23;11-16,20-15;18-20,13-11	9-10,22-21[SIL];17-17,14-14[SIL];21-21,10-10[UP3]	.(((.((((((..((((((((&))))))))..)))))).))).	AUUUUGGGUCAUACUAUUCAC&GUGAAUAGAUUGACCUUAAAA	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s743_TRINITY_DN9774_c0_g1_21_TPlot.pdf
TRINITY_DN9775_c0_g1:296	si_a467	TRINITY_DN9775_c0_g1	285	305	296	-21.10	-13.80	0.654028436018957	9	3-14,303-292;16-19,290-287	1-2,305-304[UP5];15-15,291-291[SIL];20-21,286-285[UP3]	..((((.((((((((((((..&..)))))))))))).))))..	UCCAGUUGUUACAUGUUGUCG&AUAUAAUAUGUAAUUAUUGUU	4	0.999937557622403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a467_TRINITY_DN9775_c0_g1_296_TPlot.pdf
TRINITY_DN9777_c0_g1:666	si_a899	TRINITY_DN9777_c0_g1	655	675	666	-18.70	-12.20	0.652406417112299	12	4-16,672-660	1-3,675-673[UP5];17-21,659-655[UP3]	.....(((((((((((((...&...))))))))))))).....	UAAGAAUAUUGCUUGUUAAUC&UAAUAAUAAGUAAUAUAAAAA	4	0.999909458651527	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a899_TRINITY_DN9777_c0_g1_666_TPlot.pdf
TRINITY_DN9777_c0_g1:703	si_a789	TRINITY_DN9777_c0_g1	692	713	703	-24.80	-16.12	0.65	12	1-6,713-708;10-19,703-694	7-9,707-704[AILt];20-21,693-692[UP3]	..((((((((((....((((((&))))))-...))))))))))..	GGUGGAAAAUGGUUAUAAUGGA&UCUAUU-UUUCUAUUUUCCAAU	3	0.999999999999999	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN9777_c0_g1_703_TPlot.pdf
TRINITY_DN977_c0_g1:384	si_s64	TRINITY_DN977_c0_g1	373	395	384	-24.10	-16.20	0.672199170124481	10.5	1-8,395-388;10-18,384-376	9-9,387-385[AILt];19-21,375-373[UP3]	...(((((((((...((((((((&))))))))--.)))))))))...	UAUGAGAGUAGAUACGUUGCUAA&UUAGCAAC--UUCUAUUUUUUUU	4	0.999999999187863	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN977_c0_g1_384_TPlot.pdf
TRINITY_DN9780_c0_g1:622	si_a453	TRINITY_DN9780_c0_g1	611	631	622	-21.10	-16.00	0.758293838862559	4	1-13,631-619;15-21,617-611	14-14,618-618[SIL]	(((((((.(((((((((((((&))))))))))))).)))))))	GUUGUAUUUAAUGACAAUUAU&AUAAUUGUUGUUAUAUAUAAU	4	0.867735448613868	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN9780_c0_g1_622_TPlot.pdf
TRINITY_DN9780_c0_g1:935	si_s492	TRINITY_DN9780_c0_g1	921	944	935	-20.10	-14.24	0.708457711442786	5	1-15,944-930;17-21,925-921	16-16,929-926[AILt]	(((((....(((((((((((((((&)))))))))))))))---.)))))	UGUUUAUUAGUUUAUAUUUGAAUA&UAUUUAAAUAUAAAC---AAAACA	4	0.823415922895035	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s492_TRINITY_DN9780_c0_g1_935_TPlot.pdf
TRINITY_DN9780_c0_g1:936	si_s491	TRINITY_DN9780_c0_g1	925	945	936	-19.50	-14.80	0.758974358974359	6	1-16,945-930	17-21,929-925[UP3]	.....((((((((((((((((&)))))))))))))))).....	UAUUAGUUUAUAUUUGAAUAA&UUAUUUAAAUAUAAACAAAAC	4	0.450435103912571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN9780_c0_g1_936_TPlot.pdf
TRINITY_DN9780_c7_g1:29	si_s283	TRINITY_DN9780_c7_g1	19	39	29	-34.00	-22.40	0.658823529411765	10	1-6,39-34;9-11,30-28;13-21,27-19	7-8,33-31[AILt];12-12,x-x[BULq]	(((((((((-(((...((((((&))))))-..))).)))))))))	CAGUCGGCU-GGCAAGGUUAUG&CAUAAU-ACGCCUAGUCGAUUG	4	0.754308946895822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s283_TRINITY_DN9780_c7_g1_29_TPlot.pdf
TRINITY_DN9785_c0_g1:248	si_s87	TRINITY_DN9785_c0_g1	236	259	248	-32.90	-22.00	0.668693009118541	10	3-9,257-251;10-13,248-245;14-20,243-237	1-2,259-258[UP5];x-x,250-249[BULt];x-x,244-244[BULt];21-21,236-236[UP3]	.(((((((.((((..(((((((..&..)))))))--))))-))))))).	CAGCGAAGAAAGAAAAGAGAGGUG&UUCCUUUCU--UCUU-CUUCGCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9785_c0_g1_248_TPlot.pdf
TRINITY_DN9785_c0_g1:249	si_s70	TRINITY_DN9785_c0_g1	238	258	249	-25.80	-16.90	0.655038759689922	6.5	1-6,258-253;8-19,251-240	7-7,252-252[SIL];20-21,239-238[UP3]	..((((((((((((.((((((&)))))).))))))))))))..	GCGAAGAAAGAAAAGAGAGGU&ACUUCUAUUUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9785_c0_g1_249_TPlot.pdf
TRINITY_DN9785_c0_g1:250	si_s69	TRINITY_DN9785_c0_g1	239	259	250	-23.40	-17.20	0.735042735042735	6	2-7,258-253;9-20,251-240	1-1,259-259[UP5];8-8,252-252[SIL];21-21,239-239[UP3]	.((((((((((((.((((((.&.)))))).)))))))))))).	CGAAGAAAGAAAAGAGAGGUG&AACUUCUAUUUUUUUUCUUUC	4	0.999999999888056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN9785_c0_g1_250_TPlot.pdf
TRINITY_DN9785_c0_g1:596	si_s131	TRINITY_DN9785_c0_g1	585	605	596	-26.70	-18.00	0.674157303370786	10	3-17,603-589	1-2,605-604[UP5];18-21,588-585[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUACUGAUUGGUUCAAUUUAA&AAGAGUUGAAUCAAUCAAAAA	4	0.883143119797143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s131_TRINITY_DN9785_c0_g1_596_TPlot.pdf
TRINITY_DN9794_c0_g1:2429	si_a410	TRINITY_DN9794_c0_g1	2418	2438	2429	-17.80	-12.60	0.707865168539326	9	3-17,2436-2422	1-2,2438-2437[UP5];18-21,2421-2418[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUGUUUUGGAUAUAAACGAUG&UUUUGUUUAUAUUUAAAUAAA	4	0.999998861596865	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN9794_c0_g1_2429_TPlot.pdf
TRINITY_DN979_c0_g1:195	si_a796	TRINITY_DN979_c0_g1	180	204	195	-32.70	-23.18	0.708868501529052	13.5	2-11,203-194;13-21,188-180	1-1,204-204[UP5];12-12,193-189[AILt]	(((((((((.....((((((((((.&.))))))))))----.)))))))))	GCUUUGGAUAGUGCGGAAAGUGGAU&UUCUAUUUUCC----AAUCCGAAGC	3	0.421076102940258	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a796_TRINITY_DN979_c0_g1_195_TPlot.pdf
TRINITY_DN979_c0_g1:784	si_a325	TRINITY_DN979_c0_g1	773	792	784	-25.90	-17.00	0.656370656370656	10.5	1-1,792-792;3-4,790-789;6-21,788-773	2-2,791-791[SIL];5-5,x-x[BULq]	((((((((((((((((-((.(&).)).))))))))))))))))	ACGAGGGGUGAGGAGA-CGAG&CAUGAUUUUUUUAUUCCUUGU	4	0.999999956363713	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a325_TRINITY_DN979_c0_g1_784_TPlot.pdf
TRINITY_DN979_c0_g1:867	si_a146	TRINITY_DN979_c0_g1	856	876	867	-29.70	-19.40	0.653198653198653	12	5-10,872-867;12-21,865-856	1-4,876-873[UP5];11-11,866-866[SIL]	((((((((((.((((((....&....)))))).))))))))))	GACUUUAGAAGGACGACCGUC&AAUCGUUGUUGUUUUAAGGUC	4	0.999999982037834	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a146_TRINITY_DN979_c0_g1_867_TPlot.pdf
TRINITY_DN9803_c0_g1:1146	si_a402	TRINITY_DN9803_c0_g1	1135	1155	1146	-22.40	-15.30	0.683035714285714	6	1-8,1155-1148;11-21,1145-1135	9-10,1147-1146[SIL]	(((((((((((..((((((((&))))))))..)))))))))))	AAUAUAGAUGACCCAAUUCUA&UAGAAUUGUUUUGUUUAUAUU	3	0.999999943041421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN9803_c0_g1_1146_TPlot.pdf
TRINITY_DN9803_c0_g1:759	si_a839	TRINITY_DN9803_c0_g1	747	768	759	-26.50	-17.60	0.664150943396226	14.5	7-11,762-758;12-21,756-747	1-6,768-763[UP5];x-x,757-757[BULt]	((((((((((.(((((......&......)))))-))))))))))	AAGUUGGCAGCCUUCUUGGUCA&AAAAAUAGAAG-UUGCUAACUU	3	0.991917377824188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a839_TRINITY_DN9803_c0_g1_759_TPlot.pdf
TRINITY_DN980_c0_g1:2429	si_s499	TRINITY_DN980_c0_g1	2418	2438	2429	-22.60	-15.30	0.676991150442478	6	1-15,2438-2424	16-21,2423-2418[UP3]	......(((((((((((((((&)))))))))))))))......	UUUUUUUUGUUUUGUUUAUAU&AUAUAAACAAAACAAUUCUAU	3	0.885375433861989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s499_TRINITY_DN980_c0_g1_2429_TPlot.pdf
TRINITY_DN980_c0_g1:2435	si_s493	TRINITY_DN980_c0_g1	2424	2444	2435	-19.80	-15.40	0.777777777777778	11	7-21,2438-2424	1-6,2444-2439[UP5]	(((((((((((((((......&......)))))))))))))))	UUGUUUUGUUUAUAUAAUUGU&AUUUAAAUAUAAACAAAACAA	2	0.302978007860115	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s493_TRINITY_DN980_c0_g1_2435_TPlot.pdf
TRINITY_DN9811_c0_g1:165	si_a470	TRINITY_DN9811_c0_g1	154	174	165	-21.30	-14.00	0.657276995305164	10.5	5-20,170-155	1-4,174-171[UP5];21-21,154-154[UP3]	.((((((((((((((((....&....)))))))))))))))).	AAUAGCAAUAAUUAUGUUUAC&UAAUAUGUAAUUAUUGUUAUA	4	0.999999726018927	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN9811_c0_g1_165_TPlot.pdf
TRINITY_DN9813_c1_g1:47	si_s772	TRINITY_DN9813_c1_g1	36	55	47	-23.20	-15.70	0.676724137931034	7.5	2-7,54-49;9-18,48-39	1-1,55-55[UP5];8-8,x-x[BULq];19-21,38-36[UP3]	...((((((((((-((((((.&.)))))).))))))))))...	UUGAUGGCAAUAG-AAUUGAA&AUUAAUUACUAUUGCUAUAAA	4	0.999952254085376	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s772_TRINITY_DN9813_c1_g1_47_TPlot.pdf
TRINITY_DN9814_c0_g1:1017	si_s700	TRINITY_DN9814_c0_g1	999	1026	1017	-29.20	-19.50	0.667808219178082	11	1-14,1026-1013;15-20,1005-1000	x-x,1012-1006[BULt];21-21,999-999[UP3]	.((((((.......((((((((((((((&))))))))))))))-------)))))).	GGUUCACAUGCCGGUAAUAAGUUGGCUA&UAGUCGAUUUAUUA-------GUGAACA	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s700_TRINITY_DN9814_c0_g1_1017_TPlot.pdf
TRINITY_DN9814_c0_g1:1018	si_s699	TRINITY_DN9814_c0_g1	1000	1027	1018	-28.60	-19.30	0.674825174825175	11	2-15,1026-1013;16-21,1005-1000	1-1,1027-1027[UP5];x-x,1012-1006[BULt]	((((((.......((((((((((((((.&.))))))))))))))-------))))))	GUUCACAUGCCGGUAAUAAGUUGGCUAU&UUAGUCGAUUUAUUA-------GUGAAC	4	0.910646601874433	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s699_TRINITY_DN9814_c0_g1_1018_TPlot.pdf
TRINITY_DN9814_c0_g1:1236	si_s531	TRINITY_DN9814_c0_g1	1224	1245	1236	-30.00	-20.20	0.673333333333333	8	1-13,1245-1233;15-20,1230-1225	14-14,1232-1231[AILt];21-21,1224-1224[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	UGUCGGAGAUGAAGGUGGUUUC&GAAAUCAUUUUUG-AUCCGAUC	4	0.892404319402798	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s531_TRINITY_DN9814_c0_g1_1236_TPlot.pdf
TRINITY_DN9814_c0_g1:1238	si_s529	TRINITY_DN9814_c0_g1	1226	1247	1238	-30.30	-20.40	0.673267326732673	7	2-15,1246-1233;17-21,1230-1226	1-1,1247-1247[UP5];16-16,1232-1231[AILt]	(((((..((((((((((((((.&.))))))))))))))-.)))))	UCGGAGAUGAAGGUGGUUUCGC&UCGAAAUCAUUUUUG-AUCCGA	3	0.85086792252632	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN9814_c0_g1_1238_TPlot.pdf
TRINITY_DN9814_c0_g1:1656	si_s288	TRINITY_DN9814_c0_g1	1644	1665	1656	-35.10	-24.30	0.692307692307692	11	3-12,1663-1654;14-17,1651-1648	1-2,1665-1664[UP5];13-13,1653-1652[AILt];18-21,1647-1644[UP3]	....((((..((((((((((..&..))))))))))-.))))....	UUGACCAAGACGACUGGGCGGC&UACGCCUAGUCG-AUUGGAAUU	4	0.77840241211616	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s288_TRINITY_DN9814_c0_g1_1656_TPlot.pdf
TRINITY_DN9814_c0_g1:1658	si_s286	TRINITY_DN9814_c0_g1	1646	1667	1658	-35.20	-24.30	0.690340909090909	12	5-14,1663-1654;16-19,1651-1648	1-4,1667-1664[UP5];15-15,1653-1652[AILt];20-21,1647-1646[UP3]	..((((..((((((((((....&....))))))))))-.))))..	GACCAAGACGACUGGGCGGCAU&AAUACGCCUAGUCG-AUUGGAA	4	0.716114389194624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s286_TRINITY_DN9814_c0_g1_1658_TPlot.pdf
TRINITY_DN9814_c0_g1:2181	si_s537	TRINITY_DN9814_c0_g1	2170	2190	2181	-26.40	-17.80	0.674242424242424	10	3-15,2188-2176	1-2,2190-2189[UP5];16-21,2175-2170[UP3]	......(((((((((((((..&..)))))))))))))......	CUGAACGAUUGGAUCAAAACU&AUUUUUGAUCCGAUCAAAAUA	3	0.993263627353426	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s537_TRINITY_DN9814_c0_g1_2181_TPlot.pdf
TRINITY_DN9814_c0_g1:2182	si_s536	TRINITY_DN9814_c0_g1	2171	2191	2182	-27.70	-19.20	0.693140794223827	7.5	1-2,2191-2190;4-16,2188-2176	3-3,2189-2189[SIL];17-21,2175-2171[UP3]	.....(((((((((((((.((&)).))))))))))))).....	UGAACGAUUGGAUCAAAACUG&CAUUUUUGAUCCGAUCAAAAU	3	0.923538685179731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s536_TRINITY_DN9814_c0_g1_2182_TPlot.pdf
TRINITY_DN9814_c0_g1:2183	si_s535	TRINITY_DN9814_c0_g1	2172	2192	2183	-28.60	-19.30	0.674825174825175	7.5	2-3,2191-2190;5-17,2188-2176	1-1,2192-2192[UP5];4-4,2189-2189[SIL];18-21,2175-2172[UP3]	....(((((((((((((.((.&.)).)))))))))))))....	GAACGAUUGGAUCAAAACUGG&UCAUUUUUGAUCCGAUCAAAA	3	0.976840683927084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s535_TRINITY_DN9814_c0_g1_2183_TPlot.pdf
TRINITY_DN9814_c0_g1:345	si_s742	TRINITY_DN9814_c0_g1	334	354	345	-31.40	-21.40	0.681528662420382	9.5	1-4,354-351;7-8,348-347;10-20,345-335	5-6,350-349[SIL];9-9,346-346[SIL];21-21,334-334[UP3]	.(((((((((((.((..((((&))))..)).))))))))))).	GUUGAGGUCGAUGUGACCACC&GGUGAAUAGAUUGACCUUAAA	3	0.841530218446555	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s742_TRINITY_DN9814_c0_g1_345_TPlot.pdf
TRINITY_DN9815_c0_g1:23	si_a75	TRINITY_DN9815_c0_g1	12	32	23	-21.30	-15.60	0.732394366197183	8	1-14,32-19	15-21,18-12[UP3]	.......((((((((((((((&)))))))))))))).......	GCCAACUUGAAAAACGAUUUG&CAAAUUGUUUUUCAUUAUUAA	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a75_TRINITY_DN9815_c0_g1_23_TPlot.pdf
TRINITY_DN9815_c0_g1:24	si_a74	TRINITY_DN9815_c0_g1	13	33	24	-22.20	-15.70	0.707207207207207	8	2-15,32-19	1-1,33-33[UP5];16-21,18-13[UP3]	......((((((((((((((.&.))))))))))))))......	CCAACUUGAAAAACGAUUUGG&UCAAAUUGUUUUUCAUUAUUA	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a74_TRINITY_DN9815_c0_g1_24_TPlot.pdf
TRINITY_DN9815_c0_g1:26	si_a72	TRINITY_DN9815_c0_g1	15	35	26	-21.90	-18.20	0.831050228310502	6	1-17,35-19	18-21,18-15[UP3]	....(((((((((((((((((&)))))))))))))))))....	AACUUGAAAAACGAUUUGGAA&UUUCAAAUUGUUUUUCAUUAU	3	0.621562873013131	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a72_TRINITY_DN9815_c0_g1_26_TPlot.pdf
TRINITY_DN9815_c0_g1:28	si_a70	TRINITY_DN9815_c0_g1	17	37	28	-23.90	-22.70	0.949790794979079	4	1-19,37-19	20-21,18-17[UP3]	..(((((((((((((((((((&)))))))))))))))))))..	CUUGAAAAACGAUUUGGAAGA&UCUUUCAAAUUGUUUUUCAUU	2	0.0245850391604924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN9815_c0_g1_28_TPlot.pdf
TRINITY_DN9815_c0_g1:30	si_a68	TRINITY_DN9815_c0_g1	19	39	30	-25.40	-23.40	0.921259842519685	3.5	2-21,38-19	1-1,39-39[UP5]	((((((((((((((((((((.&.))))))))))))))))))))	UGAAAAACGAUUUGGAAGAGA&CUUCUUUCAAAUUGUUUUUCA	0	0.00299728134570687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a68_TRINITY_DN9815_c0_g1_30_TPlot.pdf
TRINITY_DN9815_c0_g1:31	si_a67	TRINITY_DN9815_c0_g1	20	40	31	-27.20	-21.90	0.805147058823529	5.5	3-21,38-20	1-2,40-39[UP5]	(((((((((((((((((((..&..)))))))))))))))))))	GAAAAACGAUUUGGAAGAGAC&GCUUCUUUCAAAUUGUUUUUC	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN9815_c0_g1_31_TPlot.pdf
TRINITY_DN9815_c0_g1:32	si_a66	TRINITY_DN9815_c0_g1	21	41	32	-26.70	-18.90	0.707865168539326	7.5	4-21,38-21	1-3,41-39[UP5]	((((((((((((((((((...&...))))))))))))))))))	AAAAACGAUUUGGAAGAGACC&CGCUUCUUUCAAAUUGUUUUU	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN9815_c0_g1_32_TPlot.pdf
TRINITY_DN981_c0_g1:1508	si_a406	TRINITY_DN981_c0_g1	1497	1518	1508	-19.80	-13.10	0.661616161616162	9	2-6,1517-1513;7-18,1511-1500	1-1,1518-1518[UP5];x-x,1512-1512[BULt];19-21,1499-1497[UP3]	...((((((((((((.(((((.&.)))))-))))))))))))...	UUCAAAUAUGAGCGAUAACAAA&AUUGUU-UUGUUUAUAUUUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN981_c0_g1_1508_TPlot.pdf
TRINITY_DN981_c0_g1:3033	si_s490	TRINITY_DN981_c0_g1	3022	3042	3033	-17.80	-12.10	0.679775280898876	6	1-16,3042-3027	17-21,3026-3022[UP3]	.....((((((((((((((((&)))))))))))))))).....	GUAAAUUUAUAUUUAAAUGAA&UUUAUUUAAAUAUAAACAAAA	2	0.985106021950687	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN981_c0_g1_3033_TPlot.pdf
TRINITY_DN981_c0_g1:3035	si_s488	TRINITY_DN981_c0_g1	3024	3044	3035	-18.30	-12.10	0.66120218579235	7	3-18,3042-3027	1-2,3044-3043[UP5];19-21,3026-3024[UP3]	...((((((((((((((((..&..))))))))))))))))...	AAAUUUAUAUUUAAAUGAAGA&UAUUUAUUUAAAUAUAAACAA	3	0.999570718976108	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s488_TRINITY_DN981_c0_g1_3035_TPlot.pdf
TRINITY_DN981_c0_g1:3038	si_s485	TRINITY_DN981_c0_g1	3027	3047	3038	-18.10	-12.10	0.668508287292818	10	6-21,3042-3027	1-5,3047-3043[UP5]	((((((((((((((((.....&.....))))))))))))))))	UUUAUAUUUAAAUGAAGAAAA&CUAUAUUUAUUUAAAUAUAAA	2	0.998779475043878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN981_c0_g1_3038_TPlot.pdf
TRINITY_DN9822_c0_g1:2591	si_s86	TRINITY_DN9822_c0_g1	2580	2601	2591	-32.90	-21.60	0.656534954407295	8	1-9,2601-2593;11-14,2590-2587;16-20,2585-2581	10-10,2592-2591[AILt];15-15,2586-2586[SIL];21-21,2580-2580[UP3]	.(((((.((((..(((((((((&)))))))))-.)))).))))).	CGCGGACGAGAUCGAAAGGAGA&UUUCCUUUC-UUCUUCUUCGCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9822_c0_g1_2591_TPlot.pdf
TRINITY_DN9822_c0_g1:2698	si_s77	TRINITY_DN9822_c0_g1	2684	2709	2698	-25.50	-16.70	0.654901960784314	11.5	1-7,2709-2703;8-15,2700-2693;16-21,2689-2684	x-x,2702-2701[BULt];x-x,2692-2690[BULt]	((((((...((((((((..(((((((&)))))))--))))))))---))))))	GAAGAAAAAGGGGAAGACCAAGGAGA&UUUUUUU--UCUUUCCU---UUCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9822_c0_g1_2698_TPlot.pdf
TRINITY_DN9822_c0_g1:2805	si_a494	TRINITY_DN9822_c0_g1	2793	2814	2805	-29.50	-20.20	0.684745762711864	13.5	6-15,2809-2800;16-21,2798-2793	1-5,2814-2810[UP5];x-x,2799-2799[BULt]	((((((.((((((((((.....&.....))))))))))-))))))	GGGGACGGAGAAGCGGCGACAG&AAUAUGUCGUUUUUC-GUCUUC	4	0.999999957255236	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN9822_c0_g1_2805_TPlot.pdf
TRINITY_DN9822_c0_g1:711	si_a550	TRINITY_DN9822_c0_g1	699	720	711	-30.90	-23.00	0.744336569579288	8	4-19,717-702;20-21,700-699	1-3,720-718[UP5];x-x,701-701[BULt]	((.((((((((((((((((...&...))))))))))))))))-))	GGUGGGAUGAGGAAAUAGAACA&CAAUCUAUUUCUUUAUCUC-CC	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a550_TRINITY_DN9822_c0_g1_711_TPlot.pdf
TRINITY_DN9823_c0_g1:80	si_a246	TRINITY_DN9823_c0_g1	71	90	80	-38.60	-25.10	0.650259067357513	6	2-9,89-82;10-14,80-76;16-16,75-75;18-21,74-71	1-1,90-90[UP5];x-x,81-81[BULt];15-15,x-x[BULq];17-17,x-x[BULq]	((((-(-(((((.((((((((.&.))))))))-))))).).))))	CGGU-C-GUCGGUGGGAUCGAU&UUCGAUCCC-CCGAUUGUAUCG	3	0.942408737156086	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a246_TRINITY_DN9823_c0_g1_80_TPlot.pdf
TRINITY_DN9824_c0_g1:709	si_a498	TRINITY_DN9824_c0_g1	698	717	709	-33.50	-22.10	0.659701492537313	5.5	1-2,717-716;4-11,715-708;13-20,706-699	3-3,x-x[BULq];12-12,707-707[SIL];21-21,698-698[UP3]	.((((((((.((((((((-((&)).)))))))).)))))))).	UGAGGAAGAAGAAAAACG-CA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999999999975	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9824_c0_g1_709_TPlot.pdf
TRINITY_DN9830_c0_g1:1123	si_a462	TRINITY_DN9830_c0_g1	1112	1132	1123	-21.20	-14.30	0.674528301886792	10	1-9,1132-1124;11-16,1122-1117	10-10,1123-1123[SIL];17-21,1116-1112[UP3]	.....((((((.(((((((((&))))))))).)))))).....	UUAAAACAUGUCGUAUGUAAC&GUUAUAUAUAAUAUGUAAUUA	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a462_TRINITY_DN9830_c0_g1_1123_TPlot.pdf
TRINITY_DN9830_c0_g1:1125	si_a460	TRINITY_DN9830_c0_g1	1114	1134	1125	-21.60	-15.70	0.726851851851852	8.5	1-11,1134-1124;13-18,1122-1117	12-12,1123-1123[SIL];19-21,1116-1114[UP3]	...((((((.(((((((((((&))))))))))).))))))...	AAAACAUGUCGUAUGUAACGA&UUGUUAUAUAUAAUAUGUAAU	4	0.850296263916969	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN9830_c0_g1_1125_TPlot.pdf
TRINITY_DN9830_c0_g1:1126	si_a459	TRINITY_DN9830_c0_g1	1115	1135	1126	-23.20	-19.20	0.827586206896552	6.5	1-12,1135-1124;14-19,1122-1117	13-13,1123-1123[SIL];20-21,1116-1115[UP3]	..((((((.((((((((((((&)))))))))))).))))))..	AAACAUGUCGUAUGUAACGAC&GUUGUUAUAUAUAAUAUGUAA	3	0.1665609872581	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN9830_c0_g1_1126_TPlot.pdf
TRINITY_DN9830_c0_g1:1128	si_a457	TRINITY_DN9830_c0_g1	1117	1137	1128	-23.50	-20.10	0.85531914893617	5	2-14,1136-1124;16-21,1122-1117	1-1,1137-1137[UP5];15-15,1123-1123[SIL]	((((((.(((((((((((((.&.))))))))))))).))))))	ACAUGUCGUAUGUAACGACAG&UUGUUGUUAUAUAUAAUAUGU	3	0.096265182685471	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a457_TRINITY_DN9830_c0_g1_1128_TPlot.pdf
TRINITY_DN9830_c0_g1:1129	si_a456	TRINITY_DN9830_c0_g1	1118	1138	1129	-22.80	-18.80	0.824561403508772	7	3-15,1136-1124;17-21,1122-1118	1-2,1138-1137[UP5];16-16,1123-1123[SIL]	(((((.(((((((((((((..&..))))))))))))).)))))	CAUGUCGUAUGUAACGACAGA&AUUGUUGUUAUAUAUAAUAUG	3	0.21567070895536	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a456_TRINITY_DN9830_c0_g1_1129_TPlot.pdf
TRINITY_DN9830_c0_g1:1132	si_a453	TRINITY_DN9830_c0_g1	1121	1141	1132	-21.10	-14.30	0.677725118483412	14	6-18,1136-1124	1-5,1141-1137[UP5];19-21,1123-1121[UP3]	...(((((((((((((.....&.....)))))))))))))...	GUCGUAUGUAACGACAGAUCU&AUAAUUGUUGUUAUAUAUAAU	3	0.999996927137084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a453_TRINITY_DN9830_c0_g1_1132_TPlot.pdf
TRINITY_DN9830_c0_g1:1134	si_a451	TRINITY_DN9830_c0_g1	1123	1141	1134	-23.60	-16.50	0.699152542372881	8	1-4,1141-1138;7-20,1137-1124	5-6,x-x[BULq];21-21,1123-1123[UP3]	.((((((((((((((--((((&))))..)))))))))))))).	CGUAUGUAACGACAG--AUCU&AGAUAAUUGUUGUUAUAUAUA	3	0.982556221242392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a451_TRINITY_DN9830_c0_g1_1134_TPlot.pdf
TRINITY_DN9830_c0_g1:1135	si_a450	TRINITY_DN9830_c0_g1	1124	1142	1135	-25.20	-16.60	0.658730158730159	8	2-5,1141-1138;8-21,1137-1124	1-1,1142-1142[UP5];6-7,x-x[BULq]	((((((((((((((--((((.&.))))..))))))))))))))	GUAUGUAACGACAG--AUCUA&GAGAUAAUUGUUGUUAUAUAU	3	0.999918376666989	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN9830_c0_g1_1135_TPlot.pdf
TRINITY_DN9830_c0_g1:1548	si_a790	TRINITY_DN9830_c0_g1	1536	1557	1548	-25.80	-19.70	0.763565891472868	6	1-10,1557-1548;12-20,1545-1537	11-11,1547-1546[AILt];21-21,1536-1536[UP3]	.(((((((((..((((((((((&))))))))))-.))))))))).	AAUUGGAAAAAGAGAAAAGUAG&CUAUUUUUCU-AUUUUCCAAUC	3	0.747560219583457	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN9830_c0_g1_1548_TPlot.pdf
TRINITY_DN9830_c0_g1:1549	si_a789	TRINITY_DN9830_c0_g1	1537	1558	1549	-24.80	-21.30	0.858870967741935	5	1-11,1558-1548;13-21,1545-1537	12-12,1547-1546[AILt]	(((((((((..(((((((((((&)))))))))))-.)))))))))	AUUGGAAAAAGAGAAAAGUAGA&UCUAUUUUUCU-AUUUUCCAAU	2	0.220359978446416	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN9830_c0_g1_1549_TPlot.pdf
TRINITY_DN9830_c0_g1:1550	si_a788	TRINITY_DN9830_c0_g1	1538	1559	1550	-24.80	-21.00	0.846774193548387	4	1-12,1559-1548;14-21,1545-1538	13-13,1547-1546[AILt]	((((((((..((((((((((((&))))))))))))-.))))))))	UUGGAAAAAGAGAAAAGUAGAA&UUCUAUUUUUCU-AUUUUCCAA	2	0.258223706110639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a788_TRINITY_DN9830_c0_g1_1550_TPlot.pdf
TRINITY_DN9830_c0_g1:1551	si_a787	TRINITY_DN9830_c0_g1	1539	1560	1551	-26.30	-22.70	0.863117870722433	3	1-13,1560-1548;15-21,1545-1539	14-14,1547-1546[AILt]	(((((((..(((((((((((((&)))))))))))))-.)))))))	UGGAAAAAGAGAAAAGUAGAAG&CUUCUAUUUUUCU-AUUUUCCA	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a787_TRINITY_DN9830_c0_g1_1551_TPlot.pdf
TRINITY_DN9830_c0_g1:1552	si_a786	TRINITY_DN9830_c0_g1	1540	1561	1552	-26.60	-21.20	0.796992481203007	4	2-14,1560-1548;16-21,1545-1540	1-1,1561-1561[UP5];15-15,1547-1546[AILt]	((((((..(((((((((((((.&.)))))))))))))-.))))))	GGAAAAAGAGAAAAGUAGAAGU&UCUUCUAUUUUUCU-AUUUUCC	3	0.802004085994428	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a786_TRINITY_DN9830_c0_g1_1552_TPlot.pdf
TRINITY_DN9830_c0_g1:1553	si_a785	TRINITY_DN9830_c0_g1	1541	1562	1553	-25.90	-18.10	0.698841698841699	6	3-15,1560-1548;17-21,1545-1541	1-2,1562-1561[UP5];16-16,1547-1546[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	GAAAAAGAGAAAAGUAGAAGUA&CUCUUCUAUUUUUCU-AUUUUC	3	0.999999999667001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9830_c0_g1_1553_TPlot.pdf
TRINITY_DN9830_c0_g1:1664	si_s612	TRINITY_DN9830_c0_g1	1654	1673	1664	-28.20	-18.70	0.663120567375887	4	1-13,1673-1661;17-21,1658-1654	14-16,1660-1659[AILq]	(((((..-(((((((((((((&)))))))))))))...)))))	AUCGCAA-GAUUUAGAAAAGA&UCUUUUUUAAAUCCAAGCGAU	3	0.981835470043451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s612_TRINITY_DN9830_c0_g1_1664_TPlot.pdf
TRINITY_DN9830_c0_g1:1825	si_a725	TRINITY_DN9830_c0_g1	1814	1835	1825	-38.10	-25.60	0.671916010498688	8	1-7,1835-1829;8-8,1827-1827;10-16,1825-1819;18-21,1817-1814	x-x,1828-1828[BULt];9-9,1826-1826[SIL];17-17,1818-1818[SIL]	((((.(((((((.(.(((((((&)))))))-).))))))).))))	GGUGCAGGUGCCGGUAGUGAUG&CGUUACU-CGGGCAUCUUUACC	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a725_TRINITY_DN9830_c0_g1_1825_TPlot.pdf
TRINITY_DN9830_c0_g1:1827	si_a723	TRINITY_DN9830_c0_g1	1816	1837	1827	-35.10	-23.00	0.655270655270655	9.5	1-9,1837-1829;10-10,1827-1827;12-18,1825-1819	x-x,1828-1828[BULt];11-11,1826-1826[SIL];19-21,1818-1816[UP3]	...(((((((.(.(((((((((&)))))))))-).)))))))...	UGCAGGUGCCGGUAGUGAUGAU&AUCGUUACU-CGGGCAUCUUUA	3	0.998431744898939	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a723_TRINITY_DN9830_c0_g1_1827_TPlot.pdf
TRINITY_DN9830_c0_g1:1830	si_a721	TRINITY_DN9830_c0_g1	1818	1839	1830	-35.10	-23.30	0.663817663817664	9.5	3-11,1837-1829;12-12,1827-1827;14-20,1825-1819	1-2,1839-1838[UP5];x-x,1828-1828[BULt];13-13,1826-1826[SIL];21-21,1818-1818[UP3]	.(((((((.(.(((((((((..&..)))))))))-).))))))).	CAGGUGCCGGUAGUGAUGAUGA&UAAUCGUUACU-CGGGCAUCUU	3	0.978205327949804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a721_TRINITY_DN9830_c0_g1_1830_TPlot.pdf
TRINITY_DN9830_c0_g1:1831	si_a720	TRINITY_DN9830_c0_g1	1819	1840	1831	-35.30	-23.30	0.660056657223796	10.5	4-12,1837-1829;13-13,1827-1827;15-21,1825-1819	1-3,1840-1838[UP5];x-x,1828-1828[BULt];14-14,1826-1826[SIL]	(((((((.(.(((((((((...&...)))))))))-).)))))))	AGGUGCCGGUAGUGAUGAUGAA&AUAAUCGUUACU-CGGGCAUCU	3	0.955734717649938	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a720_TRINITY_DN9830_c0_g1_1831_TPlot.pdf
TRINITY_DN9830_c0_g1:1868	si_s82	TRINITY_DN9830_c0_g1	1857	1878	1868	-28.90	-22.20	0.768166089965398	7	1-5,1878-1874;7-8,1872-1871;9-20,1869-1858	6-6,1873-1873[SIL];x-x,1870-1870[BULt];21-21,1857-1857[UP3]	.((((((((((((.((.(((((&))))).))-)))))))))))).	CAGAAGAAGAAAGCGAUGGAGA&UUUCUUUC-CUUUCUUCUUCUU	3	0.999999175716946	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9830_c0_g1_1868_TPlot.pdf
TRINITY_DN9830_c0_g1:1869	si_s81	TRINITY_DN9830_c0_g1	1858	1879	1869	-28.90	-23.10	0.799307958477509	6	1-6,1879-1874;8-9,1872-1871;10-21,1869-1858	7-7,1873-1873[SIL];x-x,1870-1870[BULt]	((((((((((((.((.((((((&)))))).))-))))))))))))	AGAAGAAGAAAGCGAUGGAGAA&UUUUCUUUC-CUUUCUUCUUCU	3	0.999162719460639	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9830_c0_g1_1869_TPlot.pdf
TRINITY_DN9830_c0_g1:1872	si_s79	TRINITY_DN9830_c0_g1	1860	1881	1872	-26.20	-20.40	0.778625954198473	7	1-8,1881-1874;10-11,1872-1871;12-21,1869-1860	9-9,1873-1873[SIL];x-x,1870-1870[BULt]	((((((((((.((.((((((((&)))))))).))-))))))))))	AAGAAGAAAGCGAUGGAGAAGA&UUUUUUCUUUC-CUUUCUUCUU	4	0.999999948528516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9830_c0_g1_1872_TPlot.pdf
TRINITY_DN9830_c0_g1:1907	si_a69	TRINITY_DN9830_c0_g1	1896	1918	1907	-24.00	-15.78	0.6575	12	1-8,1918-1911;11-19,1906-1898	9-10,1910-1907[AILt];20-21,1897-1896[UP3]	..(((((((((....((((((((&))))))))--..)))))))))..	GAGAAAAACGGCUAGUGAAAGAA&UUCUUUCA--AAUUGUUUUUCAU	3	0.999999999999931	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN9830_c0_g1_1907_TPlot.pdf
TRINITY_DN9830_c0_g1:2035	si_s79	TRINITY_DN9830_c0_g1	2024	2044	2035	-26.20	-18.00	0.687022900763359	4.5	1-10,2044-2035;12-19,2033-2026	11-11,2034-2034[SIL];20-21,2025-2024[UP3]	..((((((((.((((((((((&)))))))))).))))))))..	AUGAAGGAAGAAAAGAAAAAA&UUUUUUCUUUCCUUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9830_c0_g1_2035_TPlot.pdf
TRINITY_DN9830_c0_g1:2125	si_a70	TRINITY_DN9830_c0_g1	2114	2133	2125	-23.90	-16.30	0.682008368200837	8	1-7,2133-2127;10-11,2125-2124;13-21,2122-2114	8-9,2126-2126[AILq];12-12,2123-2123[SIL]	(((((((((.((.-(((((((&)))))))..)).)))))))))	GAUGAAGAAGAAG-UGAAGGA&UCUUUCAAAUUGUUUUUCAUU	3	0.999999986468637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN9830_c0_g1_2125_TPlot.pdf
TRINITY_DN9830_c0_g1:2167	si_s83	TRINITY_DN9830_c0_g1	2156	2179	2167	-30.90	-22.54	0.729449838187702	9.5	1-6,2179-2174;8-21,2169-2156	7-7,2173-2170[AILt]	((((((((((((((....((((((&))))))---.))))))))))))))	GAGGAAGAAGAAAGCAGCGAAGAA&UUCUUU---CCUUUCUUCUUCUUC	3	0.99999999752924	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9830_c0_g1_2167_TPlot.pdf
TRINITY_DN9830_c0_g1:821	si_s79	TRINITY_DN9830_c0_g1	810	830	821	-26.20	-18.30	0.698473282442748	7	2-11,829-820;13-20,818-811	1-1,830-830[UP5];12-12,819-819[SIL];21-21,810-810[UP3]	.((((((((.((((((((((.&.)))))))))).)))))))).	CAGAGGAAGAGGAAGAAGAAG&UUUUUUCUUUCCUUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9830_c0_g1_821_TPlot.pdf
TRINITY_DN9830_c0_g1:822	si_s78	TRINITY_DN9830_c0_g1	811	831	822	-26.20	-20.00	0.763358778625954	5	1-12,831-820;14-21,818-811	13-13,819-819[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	AGAGGAAGAGGAAGAAGAAGA&UUUUUUUCUUUCCUUUCUUCU	4	0.99999999842781	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9830_c0_g1_822_TPlot.pdf
TRINITY_DN9830_c0_g1:825	si_s75	TRINITY_DN9830_c0_g1	813	834	825	-24.00	-19.30	0.804166666666667	5	2-15,833-820;16-21,818-813	1-1,834-834[UP5];x-x,819-819[BULt]	((((((.((((((((((((((.&.))))))))))))))-))))))	AGGAAGAGGAAGAAGAAGAAUC&UAUUUUUUUUCUUUC-CUUUCU	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9830_c0_g1_825_TPlot.pdf
TRINITY_DN9830_c0_g1:826	si_s74	TRINITY_DN9830_c0_g1	814	835	826	-25.00	-18.00	0.72	7	3-16,833-820;17-21,818-814	1-2,835-834[UP5];x-x,819-819[BULt]	(((((.((((((((((((((..&..))))))))))))))-)))))	GGAAGAGGAAGAAGAAGAAUCU&CUAUUUUUUUUCUUUC-CUUUC	3	0.999999999962595	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s74_TRINITY_DN9830_c0_g1_826_TPlot.pdf
TRINITY_DN9830_c0_g1:827	si_s73	TRINITY_DN9830_c0_g1	815	837	827	-24.00	-16.20	0.675	8	1-2,837-836;4-17,833-820;18-21,818-815	3-3,835-834[AILt];x-x,819-819[BULt]	((((.((((((((((((((..((&))-.))))))))))))))-))))	GAAGAGGAAGAAGAAGAAUCUGA&UC-UAUUUUUUUUCUUUC-CUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9830_c0_g1_827_TPlot.pdf
TRINITY_DN9830_c0_g1:829	si_s71	TRINITY_DN9830_c0_g1	817	839	829	-25.70	-17.80	0.692607003891051	7.5	1-4,839-836;6-19,833-820;20-21,818-817	5-5,835-834[AILt];x-x,819-819[BULt]	((.((((((((((((((..((((&))))-.))))))))))))))-))	AGAGGAAGAAGAAGAAUCUGAAG&CUUC-UAUUUUUUUUCUUUC-CU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9830_c0_g1_829_TPlot.pdf
TRINITY_DN9830_c1_g1:4013	si_a115	TRINITY_DN9830_c1_g1	4002	4022	4013	-30.40	-19.80	0.651315789473684	12	4-10,4019-4013;13-21,4010-4002	1-3,4022-4020[UP5];11-12,4012-4011[SIL]	(((((((((..(((((((...&...)))))))..)))))))))	GCUGUGAGGGUGGCUCGUCAA&AAUACGAGCUUGUUUUAUAGC	3	0.99849397176344	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a115_TRINITY_DN9830_c1_g1_4013_TPlot.pdf
TRINITY_DN9832_c0_g1:1176	si_a356	TRINITY_DN9832_c0_g1	1166	1185	1176	-26.90	-17.90	0.66542750929368	7	3-11,1183-1175;14-20,1173-1167	1-2,1185-1184[UP5];12-13,1174-1174[AILq];21-21,1166-1166[UP3]	.(((((((.-(((((((((..&..)))))))))..))))))).	UUCCGAUCC-AAUAGAAUUUC&UUAAUUCUAUUUUGAUCGGAU	4	0.999582893658964	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a356_TRINITY_DN9832_c0_g1_1176_TPlot.pdf
TRINITY_DN9832_c0_g1:1319	si_a67	TRINITY_DN9832_c0_g1	1307	1328	1319	-27.20	-18.20	0.669117647058823	9	1-12,1328-1317;13-17,1315-1311	x-x,1316-1316[BULt];18-21,1310-1307[UP3]	....(((((.((((((((((((&))))))))))))-)))))....	UGGUAGCGAUUUUGAAGGGAGC&GCUUCUUUCAAA-UUGUUUUUC	2	0.999998634611403	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a67_TRINITY_DN9832_c0_g1_1319_TPlot.pdf
TRINITY_DN9832_c0_g1:1327	si_a59	TRINITY_DN9832_c0_g1	1316	1335	1327	-34.00	-22.60	0.664705882352941	8.5	1-6,1335-1330;9-20,1328-1317	7-8,1329-1329[AILq];21-21,1316-1316[UP3]	.((((((((((((.-((((((&))))))..)))))))))))).	UUUUGAAGGGAGCU-GUUGGC&GUCGACUCGCUUCUUUCAAAU	3	0.999663302318872	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN9832_c0_g1_1327_TPlot.pdf
TRINITY_DN9832_c0_g1:1328	si_a58	TRINITY_DN9832_c0_g1	1317	1336	1328	-34.60	-22.70	0.65606936416185	8	2-7,1335-1330;10-21,1328-1317	1-1,1336-1336[UP5];8-9,1329-1329[AILq]	((((((((((((.-((((((.&.))))))..))))))))))))	UUUGAAGGGAGCU-GUUGGCC&AGUCGACUCGCUUCUUUCAAA	2	0.997697409833658	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a58_TRINITY_DN9832_c0_g1_1328_TPlot.pdf
TRINITY_DN9832_c0_g1:2419	si_a415	TRINITY_DN9832_c0_g1	2408	2428	2419	-18.10	-12.10	0.668508287292818	3	2-16,2427-2413;18-20,2411-2409	1-1,2428-2428[UP5];17-17,2412-2412[SIL];21-21,2408-2408[UP3]	.(((.(((((((((((((((.&.))))))))))))))).))).	AUAUUUUUAUUUAAAUAUAAC&UUUAUAUUUAAAUAAAUAUAG	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a415_TRINITY_DN9832_c0_g1_2419_TPlot.pdf
TRINITY_DN9832_c2_g1:142	si_s21	TRINITY_DN9832_c2_g1	131	152	142	-27.40	-19.10	0.697080291970803	8	1-4,152-149;5-6,147-146;9-19,143-133	x-x,148-148[BULt];7-8,145-144[SIL];20-21,132-131[UP3]	..(((((((((((..((.((((&))))-))..)))))))))))..	GGUAGUUGCAAUCUUUAUUAGU&ACUA-UAUUGAUUGCAACUAAA	4	0.819732928912653	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s21_TRINITY_DN9832_c2_g1_142_TPlot.pdf
TRINITY_DN9832_c2_g1:176	si_s22	TRINITY_DN9832_c2_g1	166	185	176	-26.70	-17.70	0.662921348314607	6	1-14,185-172;16-17,171-170	15-15,x-x[BULq];18-21,169-166[UP3]	....((-((((((((((((((&)))))))))))))).))....	UCUAAG-UGCAAUUAAUAUAG&CUAUAUUGAUUGCAACUAAAU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s22_TRINITY_DN9832_c2_g1_176_TPlot.pdf
TRINITY_DN9832_c2_g2:200	si_a413	TRINITY_DN9832_c2_g2	189	209	200	-18.40	-13.00	0.706521739130435	10	2-16,208-194	1-1,209-209[UP5];17-21,193-189[UP3]	.....(((((((((((((((.&.))))))))))))))).....	UGUAAUAUUUAAAUGUGGGCG&UGUUUAUAUUUAAAUAAAUAU	4	0.993767765366364	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a413_TRINITY_DN9832_c2_g2_200_TPlot.pdf
TRINITY_DN9832_c2_g2:201	si_a412	TRINITY_DN9832_c2_g2	190	210	201	-18.30	-13.00	0.710382513661202	11	3-17,208-194	1-2,210-209[UP5];18-21,193-190[UP3]	....(((((((((((((((..&..)))))))))))))))....	GUAAUAUUUAAAUGUGGGCGU&UUGUUUAUAUUUAAAUAAAUA	3	0.997235688190815	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a412_TRINITY_DN9832_c2_g2_201_TPlot.pdf
TRINITY_DN9834_c0_g1:1901	si_s529	TRINITY_DN9834_c0_g1	1890	1910	1901	-30.30	-20.30	0.66996699669967	7	1-16,1910-1895;18-19,1893-1892	17-17,1894-1894[SIL];20-21,1891-1890[UP3]	..((.((((((((((((((((&)))))))))))))))).))..	UAGGUUUAGGGGUGAUUUCGA&UCGAAAUCAUUUUUGAUCCGA	2	0.715511097189075	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s529_TRINITY_DN9834_c0_g1_1901_TPlot.pdf
TRINITY_DN9834_c0_g1:3329	si_s485	TRINITY_DN9834_c0_g1	3318	3338	3329	-18.10	-11.80	0.651933701657459	8	4-18,3335-3321	1-3,3338-3336[UP5];19-21,3320-3318[UP3]	...(((((((((((((((...&...)))))))))))))))...	AAGAUAUUUAAAUAAAUAGUU&CUAUAUUUAUUUAAAUAUAAA	4	0.999999054607137	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN9834_c0_g1_3329_TPlot.pdf
TRINITY_DN9835_c0_g1:305	si_a785	TRINITY_DN9835_c0_g1	294	312	305	-25.90	-17.20	0.664092664092664	5.5	2-7,311-306;10-21,305-294	1-1,312-312[UP5];8-9,x-x[BULq]	((((((((((((--((((((.&.))))))..))))))))))))	GGAAAUAGAAAA--AGAAGAC&CUCUUCUAUUUUUCUAUUUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9835_c0_g1_305_TPlot.pdf
TRINITY_DN9836_c0_g1:1042	si_s76	TRINITY_DN9836_c0_g1	1031	1051	1042	-23.60	-19.10	0.809322033898305	6	1-15,1051-1037;18-20,1034-1032	16-17,1036-1035[SIL];21-21,1031-1031[UP3]	.(((..(((((((((((((((&)))))))))))))))..))).	UAGAUUGGAGGGAAAAGAAAU&AUUUUUUUUCUUUCCUUUCUU	3	0.99999818466634	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9836_c0_g1_1042_TPlot.pdf
TRINITY_DN9836_c0_g1:1046	si_s72	TRINITY_DN9836_c0_g1	1035	1055	1046	-24.10	-15.90	0.659751037344398	11	5-19,1051-1037	1-4,1055-1052[UP5];20-21,1036-1035[UP3]	..(((((((((((((((....&....)))))))))))))))..	UUGGAGGGAAAAGAAAUCGUU&UUCUAUUUUUUUUCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9836_c0_g1_1046_TPlot.pdf
TRINITY_DN9836_c0_g1:675	si_a785	TRINITY_DN9836_c0_g1	663	684	675	-25.90	-18.10	0.698841698841699	6.5	2-11,683-674;12-20,672-664	1-1,684-684[UP5];x-x,673-673[BULt];21-21,663-663[UP3]	.(((((((((.((((((((((.&.))))))))))-))))))))).	AGAAGUGGAACAAAUGGAAGAA&CUCUUCUAUUU-UUCUAUUUUC	4	0.999999999416298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a785_TRINITY_DN9836_c0_g1_675_TPlot.pdf
TRINITY_DN9836_c0_g1:677	si_a783	TRINITY_DN9836_c0_g1	665	686	677	-24.70	-16.80	0.680161943319838	8	4-13,683-674;14-21,672-665	1-3,686-684[UP5];x-x,673-673[BULt]	((((((((.((((((((((...&...))))))))))-))))))))	AAGUGGAACAAAUGGAAGAACC&AACUCUUCUAUUU-UUCUAUUU	3	0.99999999999941	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9836_c0_g1_677_TPlot.pdf
TRINITY_DN9838_c0_g1:133	si_a824	TRINITY_DN9838_c0_g1	122	142	133	-23.60	-15.40	0.652542372881356	8	1-10,142-133;12-15,131-128	11-11,132-132[SIL];16-21,127-122[UP3]	......((((.((((((((((&)))))))))).))))......	GAUAAGUUUCCUUCCUUUCUU&AAGAAAGGAAAGAAAAAAAAU	2	0.993996226977366	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a824_TRINITY_DN9838_c0_g1_133_TPlot.pdf
TRINITY_DN9838_c0_g1:328	si_a790	TRINITY_DN9838_c0_g1	317	337	328	-25.80	-17.10	0.662790697674419	8.5	1-8,337-330;10-19,328-319	9-9,329-329[SIL];20-21,318-317[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	GUUUGGAAGAUAUGAAGGUGG&CUAUUUUUCUAUUUUCCAAUC	4	0.999999934060592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a790_TRINITY_DN9838_c0_g1_328_TPlot.pdf
TRINITY_DN9838_c0_g1:329	si_a789	TRINITY_DN9838_c0_g1	318	338	329	-24.80	-18.50	0.745967741935484	7.5	1-9,338-330;11-20,328-319	10-10,329-329[SIL];21-21,318-318[UP3]	.((((((((((.(((((((((&))))))))).)))))))))).	UUUGGAAGAUAUGAAGGUGGA&UCUAUUUUUCUAUUUUCCAAU	4	0.993090158133251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a789_TRINITY_DN9838_c0_g1_329_TPlot.pdf
TRINITY_DN9838_c0_g1:574	si_s768	TRINITY_DN9838_c0_g1	564	583	574	-26.80	-17.80	0.664179104477612	5	2-12,582-572;15-20,570-565	1-1,583-583[UP5];13-14,571-571[AILq];21-21,564-564[UP3]	.((((((.-(((((((((((.&.)))))))))))..)))))).	GAGCAAUU-UAGUUAAUCGUC&AACGAUUAAUUACUAUUGCUA	2	0.927642589375605	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s768_TRINITY_DN9838_c0_g1_574_TPlot.pdf
TRINITY_DN9839_c0_g2:1499	si_a148	TRINITY_DN9839_c0_g2	1489	1508	1499	-30.30	-20.20	0.666666666666667	9	1-14,1508-1495;16-16,1494-1494;18-19,1492-1491	15-15,x-x[BULq];17-17,1493-1493[SIL];20-21,1490-1489[UP3]	..((.(-((((((((((((((&)))))))))))))).).))..	AAGAGC-UAGGGCAGCAGCGA&UCGUUGUUGUUUUAAGGUCAA	4	0.999996669810561	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN9839_c0_g2_1499_TPlot.pdf
TRINITY_DN9839_c0_g2:1502	si_a145	TRINITY_DN9839_c0_g2	1491	1511	1502	-28.10	-18.70	0.665480427046263	10.5	3-17,1509-1495	1-2,1511-1510[UP5];18-21,1494-1491[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAGCUAGGGCAGCAGCGAUGG&UAAUCGUUGUUGUUUUAAGGU	2	0.998089543122984	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a145_TRINITY_DN9839_c0_g2_1502_TPlot.pdf
TRINITY_DN9839_c0_g2:1505	si_a142	TRINITY_DN9839_c0_g2	1494	1514	1505	-23.50	-18.70	0.795744680851064	13	6-20,1509-1495	1-5,1514-1510[UP5];21-21,1494-1494[UP3]	.(((((((((((((((.....&.....))))))))))))))).	CUAGGGCAGCAGCGAUGGACU&AAUUAAUCGUUGUUGUUUUAA	3	0.636578896750164	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN9839_c0_g2_1505_TPlot.pdf
TRINITY_DN9839_c0_g2:1506	si_a141	TRINITY_DN9839_c0_g2	1495	1515	1506	-23.80	-18.40	0.773109243697479	14	7-21,1509-1495	1-6,1515-1510[UP5]	(((((((((((((((......&......)))))))))))))))	UAGGGCAGCAGCGAUGGACUA&UAAUUAAUCGUUGUUGUUUUA	2	0.560204671576432	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN9839_c0_g2_1506_TPlot.pdf
TRINITY_DN9839_c0_g2:1507	si_a140	TRINITY_DN9839_c0_g2	1496	1516	1507	-25.20	-18.10	0.718253968253968	8	1-3,1516-1514;5-6,1512-1511;8-21,1509-1496	4-4,1513-1513[SIL];7-7,1510-1510[SIL]	((((((((((((((.((.(((&))).)).))))))))))))))	AGGGCAGCAGCGAUGGACUAC&GUAAUUAAUCGUUGUUGUUUU	4	0.984221612655804	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN9839_c0_g2_1507_TPlot.pdf
TRINITY_DN9839_c0_g2:1508	si_a139	TRINITY_DN9839_c0_g2	1497	1517	1508	-25.90	-17.70	0.683397683397683	8.5	2-4,1516-1514;6-7,1512-1511;9-21,1509-1497	1-1,1517-1517[UP5];5-5,1513-1513[SIL];8-8,1510-1510[SIL]	(((((((((((((.((.(((.&.))).)).)))))))))))))	GGGCAGCAGCGAUGGACUACC&AGUAAUUAAUCGUUGUUGUUU	4	0.995875735185647	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN9839_c0_g2_1508_TPlot.pdf
TRINITY_DN9839_c0_g2:3439	si_a642	TRINITY_DN9839_c0_g2	3429	3448	3439	-25.90	-17.70	0.683397683397683	8.5	4-17,3445-3432;19-21,3431-3429	1-3,3448-3446[UP5];18-18,x-x[BULq]	(((-((((((((((((((...&...)))))))))))))).)))	CUG-UGUGUUACUCAGAACGA&UUUUUUUGAGUAAUAUAUCGG	2	0.925818842718878	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN9839_c0_g2_3439_TPlot.pdf
TRINITY_DN9840_c0_g1:1829	si_a80	TRINITY_DN9840_c0_g1	1818	1838	1829	-22.10	-15.60	0.705882352941176	6.5	2-15,1837-1824;17-19,1822-1820	1-1,1838-1838[UP5];16-16,1823-1823[SIL];20-21,1819-1818[UP3]	..(((.((((((((((((((.&.)))))))))))))).)))..	AAUUCAUAGUGGUGAAAAACC&UGUUUUUCAUUAUUAAGAAAA	4	0.99833699870359	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a80_TRINITY_DN9840_c0_g1_1829_TPlot.pdf
TRINITY_DN9842_c5_g1:79	si_s761	TRINITY_DN9842_c5_g1	67	88	79	-25.90	-16.90	0.652509652509653	9.5	5-16,84-73;17-21,71-67	1-4,88-85[UP5];x-x,72-72[BULt]	(((((.((((((((((((....&....))))))))))))-)))))	AGUGGUUUGAUCGUUGUUCUCC&AAACAACAACGAUUAA-UUACU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s761_TRINITY_DN9842_c5_g1_79_TPlot.pdf
TRINITY_DN9845_c0_g1:217	si_s186	TRINITY_DN9845_c0_g1	205	226	217	-31.90	-20.80	0.652037617554859	8	1-4,226-223;6-11,221-216;12-21,214-205	5-5,222-222[SIL];x-x,215-215[BULt]	((((((((((.((((((.((((&)))).))))))-))))))))))	UUCAGGAUGACUUGUUGGUCGG&CCGAGUAACGA-UUAUUUUGGA	3	0.945802255874575	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s186_TRINITY_DN9845_c0_g1_217_TPlot.pdf
TRINITY_DN9845_c0_g1:237	si_s802	TRINITY_DN9845_c0_g1	226	246	237	-26.40	-17.90	0.678030303030303	9.5	1-3,246-244;6-9,241-238;11-18,236-229	4-5,243-242[SIL];10-10,237-237[SIL];19-21,228-226[UP3]	...((((((((.((((..(((&)))..)))).))))))))...	GACGGUAGCGAUGAUAUUAUA&UAUUUUAUCUUCGUUACCUUU	3	0.999999852506251	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN9845_c0_g1_237_TPlot.pdf
TRINITY_DN9847_c0_g1:145	si_a282	TRINITY_DN9847_c0_g1	134	157	145	-30.30	-20.20	0.666666666666667	12.5	1-5,157-153;6-17,149-138	x-x,152-150[BULt];18-21,137-134[UP3]	....((((((((((((...(((((&)))))---))))))))))))....	GUCCGUCCAAGUGGUCAAGUUUUC&GAAAA---GAUCGCUUGGAUUUAA	4	0.977121363377817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a282_TRINITY_DN9847_c0_g1_145_TPlot.pdf
TRINITY_DN9847_c0_g1:30	si_a783	TRINITY_DN9847_c0_g1	19	40	30	-24.70	-16.50	0.668016194331984	9.5	2-5,39-36;6-17,34-23	1-1,40-40[UP5];x-x,35-35[BULt];18-21,22-19[UP3]	....((((((((((((.((((.&.))))-))))))))))))....	GCGCGGAAAAAUGGGACGAGUC&AACUC-UUCUAUUUUUCUAUUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9847_c0_g1_30_TPlot.pdf
TRINITY_DN9847_c0_g1:818	si_s567	TRINITY_DN9847_c0_g1	803	827	818	-30.60	-19.90	0.650326797385621	16	2-11,826-817;12-15,812-809	1-1,827-827[UP5];x-x,816-813[BULt];16-21,808-803[UP3]	......((((....((((((((((.&.))))))))))----))))......	UCAACGUCCUGGUGUGUCCCGAGAG&UUUUCGGGACA----AGGAAUAAAA	4	0.990185441384383	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s567_TRINITY_DN9847_c0_g1_818_TPlot.pdf
TRINITY_DN9848_c0_g1:1032	si_a123	TRINITY_DN9848_c0_g1	1021	1041	1032	-26.60	-19.30	0.725563909774436	8.5	1-17,1041-1025	18-21,1024-1021[UP3]	....(((((((((((((((((&)))))))))))))))))....	AAAAUGUUGUUGUGAAACAGG&CUUGUUUUAUAGCAAUAGUAA	4	0.859285759448981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a123_TRINITY_DN9848_c0_g1_1032_TPlot.pdf
TRINITY_DN9848_c0_g1:1034	si_a121	TRINITY_DN9848_c0_g1	1023	1043	1034	-29.30	-19.50	0.665529010238908	9	3-19,1041-1025	1-2,1043-1042[UP5];20-21,1024-1023[UP3]	..(((((((((((((((((..&..)))))))))))))))))..	AAUGUUGUUGUGAAACAGGAA&AGCUUGUUUUAUAGCAAUAGU	3	0.993530920185839	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a121_TRINITY_DN9848_c0_g1_1034_TPlot.pdf
TRINITY_DN9848_c0_g1:1194	si_s94	TRINITY_DN9848_c0_g1	1185	1203	1194	-35.50	-24.50	0.690140845070423	4.5	1-12,1203-1192;15-20,1191-1186	13-14,x-x[BULq];21-21,1185-1185[UP3]	.((((((--((((((((((((&))))))))))))..)))))).	GAAUCUG--GCGAAGAGGAAG&CUUCUUCUUCGCUUCGGAUUG	3	0.999788637084497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s94_TRINITY_DN9848_c0_g1_1194_TPlot.pdf
TRINITY_DN9848_c0_g1:1195	si_s93	TRINITY_DN9848_c0_g1	1186	1204	1195	-34.80	-25.60	0.735632183908046	3.5	1-13,1204-1192;16-21,1191-1186	14-15,x-x[BULq]	((((((--(((((((((((((&)))))))))))))..))))))	AAUCUG--GCGAAGAGGAAGA&UCUUCUUCUUCGCUUCGGAUU	3	0.983584081838114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s93_TRINITY_DN9848_c0_g1_1195_TPlot.pdf
TRINITY_DN9848_c0_g1:1196	si_s92	TRINITY_DN9848_c0_g1	1187	1205	1196	-34.90	-25.60	0.73352435530086	3.5	1-14,1205-1192;17-21,1191-1187	15-16,x-x[BULq]	(((((--((((((((((((((&))))))))))))))..)))))	AUCUG--GCGAAGAGGAAGAA&UUCUUCUUCUUCGCUUCGGAU	3	0.993660562679064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN9848_c0_g1_1196_TPlot.pdf
TRINITY_DN9848_c0_g1:1197	si_s91	TRINITY_DN9848_c0_g1	1188	1206	1197	-34.70	-24.60	0.708933717579251	4.5	2-15,1205-1192;18-21,1191-1188	1-1,1206-1206[UP5];16-17,x-x[BULq]	((((--((((((((((((((.&.))))))))))))))..))))	UCUG--GCGAAGAGGAAGAAG&UUUCUUCUUCUUCGCUUCGGA	4	0.999983337958052	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN9848_c0_g1_1197_TPlot.pdf
TRINITY_DN9848_c0_g1:1200	si_s88	TRINITY_DN9848_c0_g1	1189	1209	1200	-34.80	-24.10	0.692528735632184	9.5	4-19,1206-1191	1-3,1209-1207[UP5];20-21,1190-1189[UP3]	..((((((((((((((((...&...))))))))))))))))..	CUGGCGAAGAGGAAGAAGAAG&UCCUUUCUUCUUCUUCGCUUC	4	0.999999999416298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN9848_c0_g1_1200_TPlot.pdf
TRINITY_DN9848_c0_g1:1201	si_s87	TRINITY_DN9848_c0_g1	1190	1211	1201	-32.90	-24.20	0.735562310030395	7.5	1-3,1211-1209;5-20,1206-1191	4-4,1208-1207[AILt];21-21,1190-1190[UP3]	.((((((((((((((((..(((&)))-.)))))))))))))))).	UGGCGAAGAGGAAGAAGAAGAA&UUC-CUUUCUUCUUCUUCGCUU	3	0.999980609155347	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9848_c0_g1_1201_TPlot.pdf
TRINITY_DN9848_c0_g1:1202	si_s86	TRINITY_DN9848_c0_g1	1191	1212	1202	-32.90	-24.40	0.741641337386018	7	2-4,1211-1209;6-21,1206-1191	1-1,1212-1212[UP5];5-5,1208-1207[AILt]	((((((((((((((((..(((.&.)))-.))))))))))))))))	GGCGAAGAGGAAGAAGAAGAAG&UUUC-CUUUCUUCUUCUUCGCU	3	0.999940960105823	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9848_c0_g1_1202_TPlot.pdf
TRINITY_DN9848_c0_g1:1204	si_s90	TRINITY_DN9848_c0_g1	1192	1213	1204	-35.30	-24.90	0.705382436260623	5	2-14,1212-1200;16-20,1197-1193	1-1,1213-1213[UP5];15-15,1199-1198[AILt];21-21,1192-1192[UP3]	.(((((..(((((((((((((.&.)))))))))))))-.))))).	GCGAAGAGGAAGAAGAAGAAGA&CUUUCUUCUUCUUC-GCUUCGG	3	0.999995485732064	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s90_TRINITY_DN9848_c0_g1_1204_TPlot.pdf
TRINITY_DN9848_c0_g1:1205	si_s89	TRINITY_DN9848_c0_g1	1193	1214	1205	-35.30	-24.60	0.696883852691218	6	3-15,1212-1200;17-21,1197-1193	1-2,1214-1213[UP5];16-16,1199-1198[AILt]	(((((..(((((((((((((..&..)))))))))))))-.)))))	CGAAGAGGAAGAAGAAGAAGAU&CCUUUCUUCUUCUUC-GCUUCG	2	0.999969339466232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9848_c0_g1_1205_TPlot.pdf
TRINITY_DN9848_c0_g1:1218	si_s810	TRINITY_DN9848_c0_g1	1203	1227	1218	-27.90	-19.20	0.688172043010753	15	1-10,1227-1218;11-17,1213-1207	x-x,1217-1214[BULt];18-21,1206-1203[UP3]	....(((((((....((((((((((&))))))))))----)))))))....	GAAGAAGAAGAUUCUGGUGACGAGG&CUUCGUUACC----UUUUCUUAAUA	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN9848_c0_g1_1218_TPlot.pdf
TRINITY_DN9848_c0_g1:1219	si_s809	TRINITY_DN9848_c0_g1	1204	1228	1219	-28.50	-20.80	0.729824561403509	13.5	1-11,1228-1218;12-18,1213-1207	x-x,1217-1214[BULt];19-21,1206-1204[UP3]	...(((((((....(((((((((((&)))))))))))----)))))))...	AAGAAGAAGAUUCUGGUGACGAGGA&UCUUCGUUACC----UUUUCUUAAU	3	0.989484119529296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN9848_c0_g1_1219_TPlot.pdf
TRINITY_DN9848_c0_g1:1220	si_s808	TRINITY_DN9848_c0_g1	1205	1229	1220	-28.60	-20.80	0.727272727272727	13.5	2-12,1228-1218;13-19,1213-1207	1-1,1229-1229[UP5];x-x,1217-1214[BULt];20-21,1206-1205[UP3]	..(((((((....(((((((((((.&.)))))))))))----)))))))..	AGAAGAAGAUUCUGGUGACGAGGAA&AUCUUCGUUACC----UUUUCUUAA	4	0.995427319515545	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN9848_c0_g1_1220_TPlot.pdf
TRINITY_DN9848_c0_g1:1222	si_s806	TRINITY_DN9848_c0_g1	1207	1231	1222	-28.60	-20.40	0.713286713286713	11.5	4-14,1228-1218;15-21,1213-1207	1-3,1231-1229[UP5];x-x,1217-1214[BULt]	(((((((....(((((((((((...&...)))))))))))----)))))))	AAGAAGAUUCUGGUGACGAGGAAGA&UUAUCUUCGUUACC----UUUUCUU	3	0.999770809833822	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN9848_c0_g1_1222_TPlot.pdf
TRINITY_DN9848_c0_g1:1223	si_s805	TRINITY_DN9848_c0_g1	1208	1232	1223	-28.60	-19.50	0.681818181818182	13.5	5-15,1228-1218;16-21,1213-1208	1-4,1232-1229[UP5];x-x,1217-1214[BULt]	((((((....(((((((((((....&....)))))))))))----))))))	AGAAGAUUCUGGUGACGAGGAAGAG&UUUAUCUUCGUUACC----UUUUCU	3	0.999999734700928	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN9848_c0_g1_1223_TPlot.pdf
TRINITY_DN9848_c0_g1:1224	si_s804	TRINITY_DN9848_c0_g1	1209	1233	1224	-27.90	-18.20	0.652329749103943	15	6-16,1228-1218;17-21,1213-1209	1-5,1233-1229[UP5];x-x,1217-1214[BULt]	(((((....(((((((((((.....&.....)))))))))))----)))))	GAAGAUUCUGGUGACGAGGAAGAGC&UUUUAUCUUCGUUACC----UUUUC	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s804_TRINITY_DN9848_c0_g1_1224_TPlot.pdf
TRINITY_DN9848_c0_g1:1225	si_s803	TRINITY_DN9848_c0_g1	1214	1234	1225	-26.00	-17.30	0.665384615384615	16.5	7-17,1228-1218	1-6,1234-1229[UP5];18-21,1217-1214[UP3]	....(((((((((((......&......)))))))))))....	UUCUGGUGACGAGGAAGAGCA&AUUUUAUCUUCGUUACCUUUU	4	0.999999999999855	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN9848_c0_g1_1225_TPlot.pdf
TRINITY_DN9848_c0_g1:1226	si_s802	TRINITY_DN9848_c0_g1	1215	1235	1226	-26.40	-17.30	0.65530303030303	17.5	8-18,1228-1218	1-7,1235-1229[UP5];19-21,1217-1215[UP3]	...(((((((((((.......&.......)))))))))))...	UCUGGUGACGAGGAAGAGCAG&UAUUUUAUCUUCGUUACCUUU	3	0.999999999995535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s802_TRINITY_DN9848_c0_g1_1226_TPlot.pdf
TRINITY_DN9848_c0_g1:524	si_a316	TRINITY_DN9848_c0_g1	514	532	524	-26.30	-17.60	0.669201520912548	5.5	1-6,532-527;8-11,526-523;13-21,522-514	7-7,x-x[BULq];12-12,x-x[BULq]	(((((((((-((((-((((((&)))))).)))).)))))))))	AGAAAAAUC-UGGA-AAGUCC&GGAUUUAUCCAUGAUUUUUUU	3	0.999999124105573	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN9848_c0_g1_524_TPlot.pdf
TRINITY_DN9848_c0_g1:577	si_a504	TRINITY_DN9848_c0_g1	566	586	577	-32.90	-22.20	0.674772036474164	9	1-8,586-579;10-16,577-571	9-9,578-578[SIL];17-21,570-566[UP3]	.....(((((((.((((((((&)))))))).))))))).....	AAAUGCCAAGGAUGGCGAGAA&UUUUCGUCUUCCUUGGAAUGU	3	0.99990783519518	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a504_TRINITY_DN9848_c0_g1_577_TPlot.pdf
TRINITY_DN9848_c0_g1:578	si_a503	TRINITY_DN9848_c0_g1	567	587	578	-32.10	-22.40	0.697819314641745	9	2-9,586-579;11-17,577-571	1-1,587-587[UP5];10-10,578-578[SIL];18-21,570-567[UP3]	....(((((((.((((((((.&.)))))))).)))))))....	AAUGCCAAGGAUGGCGAGAAU&UUUUUCGUCUUCCUUGGAAUG	3	0.999495250301284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN9848_c0_g1_578_TPlot.pdf
TRINITY_DN9848_c0_g1:579	si_a502	TRINITY_DN9848_c0_g1	568	588	579	-32.10	-22.40	0.697819314641745	10	3-10,586-579;12-18,577-571	1-2,588-587[UP5];11-11,578-578[SIL];19-21,570-568[UP3]	...(((((((.((((((((..&..)))))))).)))))))...	AUGCCAAGGAUGGCGAGAAUA&GUUUUUCGUCUUCCUUGGAAU	3	0.999988774176646	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a502_TRINITY_DN9848_c0_g1_579_TPlot.pdf
TRINITY_DN9848_c0_g1:580	si_a501	TRINITY_DN9848_c0_g1	569	589	580	-33.50	-22.40	0.66865671641791	11	4-11,586-579;13-19,577-571	1-3,589-587[UP5];12-12,578-578[SIL];20-21,570-569[UP3]	..(((((((.((((((((...&...)))))))).)))))))..	UGCCAAGGAUGGCGAGAAUAA&CGUUUUUCGUCUUCCUUGGAA	3	0.999999998569618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN9848_c0_g1_580_TPlot.pdf
TRINITY_DN9848_c0_g1:581	si_a500	TRINITY_DN9848_c0_g1	570	590	581	-34.40	-22.40	0.651162790697674	11	5-12,586-579;14-20,577-571	1-4,590-587[UP5];13-13,578-578[SIL];21-21,570-570[UP3]	.(((((((.((((((((....&....)))))))).))))))).	GCCAAGGAUGGCGAGAAUAAG&UCGUUUUUCGUCUUCCUUGGA	3	0.999999999996568	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN9848_c0_g1_581_TPlot.pdf
TRINITY_DN9848_c0_g1:61	si_a393	TRINITY_DN9848_c0_g1	50	70	61	-22.70	-15.30	0.674008810572687	10	1-14,70-57	15-21,56-50[UP3]	.......((((((((((((((&)))))))))))))).......	CUUUUAUUUCUGUGUUCUUGA&UUAAGAAUAUAGAAUUGUUUU	4	0.995959997066652	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a393_TRINITY_DN9848_c0_g1_61_TPlot.pdf
TRINITY_DN9848_c0_g1:63	si_a391	TRINITY_DN9848_c0_g1	52	72	63	-22.80	-15.30	0.671052631578947	11	3-16,70-57	1-2,72-71[UP5];17-21,56-52[UP3]	.....((((((((((((((..&..)))))))))))))).....	UUUAUUUCUGUGUUCUUGAAC&AAUUAAGAAUAUAGAAUUGUU	4	0.966134107122519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a391_TRINITY_DN9848_c0_g1_63_TPlot.pdf
TRINITY_DN9848_c0_g1:67	si_a387	TRINITY_DN9848_c0_g1	56	75	67	-24.90	-17.00	0.682730923694779	8	2-4,74-72;7-20,70-57	1-1,75-75[UP5];5-6,71-71[AILq];21-21,56-56[UP3]	.((((((((((((((.-(((.&.)))..)))))))))))))).	UUUCUGUGUUCUUGAA-CGAC&UUCGAAUUAAGAAUAUAGAAU	4	0.64374836270199	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a387_TRINITY_DN9848_c0_g1_67_TPlot.pdf
TRINITY_DN9848_c0_g1:970	si_s312	TRINITY_DN9848_c0_g1	959	979	970	-29.00	-20.00	0.689655172413793	12	5-17,975-963	1-4,979-976[UP5];18-21,962-959[UP3]	....(((((((((((((....&....)))))))))))))....	AAAAAGGAGGGACAGAAGAAA&AAAAUUCUGUCCUUCUUGUUA	3	0.999997777332845	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s312_TRINITY_DN9848_c0_g1_970_TPlot.pdf
TRINITY_DN9848_c0_g1:971	si_s311	TRINITY_DN9848_c0_g1	960	980	971	-30.60	-20.00	0.65359477124183	13	6-18,975-963	1-5,980-976[UP5];19-21,962-960[UP3]	...(((((((((((((.....&.....)))))))))))))...	AAAAGGAGGGACAGAAGAAAU&GAAAAUUCUGUCCUUCUUGUU	4	0.999997796202497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s311_TRINITY_DN9848_c0_g1_971_TPlot.pdf
TRINITY_DN9848_c0_g1:973	si_s76	TRINITY_DN9848_c0_g1	962	982	973	-23.60	-17.80	0.754237288135593	9	4-11,979-972;13-21,970-962	1-3,982-980[UP5];12-12,971-971[SIL]	(((((((((.((((((((...&...)))))))).)))))))))	AAGGAGGGACAGAAGAAAUAA&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9848_c0_g1_973_TPlot.pdf
TRINITY_DN9848_c0_g1:974	si_s73	TRINITY_DN9848_c0_g1	961	983	974	-24.00	-16.30	0.679166666666667	10	3-11,981-973;12-21,970-961	1-2,983-982[UP5];x-x,972-971[BULt]	((((((((((..(((((((((..&..)))))))))--))))))))))	AAAGGAGGGACAGAAGAAAUAAA&UCUAUUUUUUU--UCUUUCCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9848_c0_g1_974_TPlot.pdf
TRINITY_DN984_c0_g1:1997	si_a399	TRINITY_DN984_c0_g1	1986	2006	1997	-22.60	-14.80	0.654867256637168	10.5	4-7,2003-2000;9-20,1998-1987	1-3,2006-2004[UP5];8-8,1999-1999[SIL];21-21,1986-1986[UP3]	.((((((((((((.((((...&...)))).)))))))))))).	CUAGACGAGACAAAUCUGAAG&AUAUAGAAUUGUUUUGUUUAU	2	0.999999531832773	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN984_c0_g1_1997_TPlot.pdf
TRINITY_DN984_c0_g1:1998	si_a398	TRINITY_DN984_c0_g1	1987	2007	1998	-22.40	-14.70	0.65625	11.5	5-8,2003-2000;10-21,1998-1987	1-4,2007-2004[UP5];9-9,1999-1999[SIL]	((((((((((((.((((....&....)))).))))))))))))	UAGACGAGACAAAUCUGAAGA&AAUAUAGAAUUGUUUUGUUUA	2	0.999999715429906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN984_c0_g1_1998_TPlot.pdf
TRINITY_DN984_c0_g1:2908	si_s75	TRINITY_DN984_c0_g1	2895	2917	2908	-24.00	-16.00	0.666666666666667	12	5-17,2913-2901;18-21,2898-2895	1-4,2917-2914[UP5];x-x,2900-2899[BULt]	((((..(((((((((((((....&....)))))))))))))--))))	AGAAAUAGGAAGGAGGAAAUCAA&UAUUUUUUUUCUUUCCU--UUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN984_c0_g1_2908_TPlot.pdf
TRINITY_DN984_c0_g1:3115	si_a71	TRINITY_DN984_c0_g1	3102	3124	3115	-23.30	-16.10	0.690987124463519	10.5	1-6,3124-3119;9-12,3116-3113;13-21,3110-3102	7-8,3118-3117[SIL];x-x,3112-3111[BULt]	(((((((((..((((..((((((&))))))..))))--)))))))))	UAAUGAAGAAAGCAAGAUGGAAG&CUUUCAAAUUGU--UUUUCAUUA	2	0.9998987283439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN984_c0_g1_3115_TPlot.pdf
TRINITY_DN984_c0_g1:3119	si_s67	TRINITY_DN984_c0_g1	3107	3128	3119	-25.60	-17.20	0.671875	6	1-3,3128-3126;5-14,3124-3115;15-21,3113-3107	4-4,3125-3125[SIL];x-x,3114-3114[BULt]	(((((((.((((((((((.(((&))).))))))))))-)))))))	AAGAAAGCAAGAUGGAAGGUGU&GCAACUUCUAUUUU-UUUUCUU	4	0.999999999921187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN984_c0_g1_3119_TPlot.pdf
TRINITY_DN984_c0_g1:3229	si_s76	TRINITY_DN984_c0_g1	3217	3238	3229	-23.60	-15.50	0.656779661016949	6	1-11,3238-3228;12-18,3226-3220	x-x,3227-3227[BULt];19-21,3219-3217[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	UCUAAAGGAACAGAAAAAGAAU&AUUUUUUUUCU-UUCCUUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN984_c0_g1_3229_TPlot.pdf
TRINITY_DN984_c0_g1:3403	si_s77	TRINITY_DN984_c0_g1	3385	3413	3403	-25.50	-16.60	0.650980392156863	10	1-9,3413-3405;10-16,3403-3397;17-21,3389-3385	x-x,3404-3404[BULt];x-x,3396-3390[BULt]	(((((.......(((((((.(((((((((&)))))))))-)))))))-------)))))	GAAGAGAUCGUAAAGGAAACGAAAAGAAA&UUUUUUUUC-UUUCCUU-------UCUUC	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN984_c0_g1_3403_TPlot.pdf
TRINITY_DN9851_c1_g1:1000	si_a464	TRINITY_DN9851_c1_g1	989	1010	1000	-19.60	-12.90	0.658163265306122	4	1-9,1010-1002;10-17,1000-993;20-21,990-989	x-x,1001-1001[BULt];18-19,992-991[SIL]	((..((((((((.(((((((((&)))))))))-))))))))..))	AAGUAUUACAUAUUUAUAUAUA&UAUAUAUAA-UAUGUAAUUAUU	2	0.997639373744729	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN9851_c1_g1_1000_TPlot.pdf
TRINITY_DN9851_c1_g1:1002	si_a463	TRINITY_DN9851_c1_g1	990	1011	1002	-19.70	-12.90	0.654822335025381	6	2-10,1010-1002;11-18,1000-993	1-1,1011-1011[UP5];x-x,1001-1001[BULt];19-21,992-990[UP3]	...((((((((.(((((((((.&.)))))))))-))))))))...	AGUAUUACAUAUUUAUAUAUAU&UUAUAUAUAA-UAUGUAAUUAU	2	0.998182325710981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN9851_c1_g1_1002_TPlot.pdf
TRINITY_DN9851_c1_g1:1006	si_a461	TRINITY_DN9851_c1_g1	992	1015	1006	-21.50	-16.60	0.772093023255814	8	1-11,1015-1005;12-20,1001-993	x-x,1004-1002[BULt];21-21,992-992[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	UAUUACAUAUUUAUAUAUAUAGCA&UGUUAUAUAUA---AUAUGUAAUU	2	0.369036653960689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN9851_c1_g1_1006_TPlot.pdf
TRINITY_DN9851_c1_g1:1007	si_a460	TRINITY_DN9851_c1_g1	993	1016	1007	-21.60	-16.80	0.777777777777778	8	2-12,1015-1005;13-21,1001-993	1-1,1016-1016[UP5];x-x,1004-1002[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	AUUACAUAUUUAUAUAUAUAGCAU&UUGUUAUAUAUA---AUAUGUAAU	2	0.428834744764802	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN9851_c1_g1_1007_TPlot.pdf
TRINITY_DN9851_c1_g1:1008	si_a459	TRINITY_DN9851_c1_g1	994	1017	1008	-23.20	-15.80	0.681034482758621	7	3-13,1015-1005;14-21,1001-994	1-2,1017-1016[UP5];x-x,1004-1002[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	UUACAUAUUUAUAUAUAUAGCAUU&GUUGUUAUAUAUA---AUAUGUAA	0	0.110921550238995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN9851_c1_g1_1008_TPlot.pdf
TRINITY_DN9851_c1_g2:1000	si_a494	TRINITY_DN9851_c1_g2	989	1011	1000	-29.50	-20.50	0.694915254237288	13	6-9,1006-1003;10-21,1000-989	1-5,1011-1007[UP5];x-x,1002-1001[BULt]	((((((((((((..((((.....&.....))))--))))))))))))	GAAGACGAAAAAAUCGACGAGCU&AAUAUGUCG--UUUUUCGUCUUC	2	0.99961161751332	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN9851_c1_g2_1000_TPlot.pdf
TRINITY_DN9851_c1_g2:124	si_s60	TRINITY_DN9851_c1_g2	113	135	124	-28.20	-19.30	0.684397163120567	12	1-5,135-131;6-15,128-119	x-x,130-129[BULt];16-21,118-113[UP3]	......((((((((((..(((((&)))))--))))))))))......	UCGUUCGAAGUUGCUGCUGCUUG&CAAGU--UAGCAACUUCUAUUUU	4	0.973013345965479	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN9851_c1_g2_124_TPlot.pdf
TRINITY_DN9851_c1_g2:1385	si_s79	TRINITY_DN9851_c1_g2	1374	1394	1385	-26.20	-18.00	0.687022900763359	8	2-11,1393-1384;13-19,1382-1376	1-1,1394-1394[UP5];12-12,1383-1383[SIL];20-21,1375-1374[UP3]	..(((((((.((((((((((.&.)))))))))).)))))))..	UCGAAGAAACGAGAGAGGAAC&UUUUUUCUUUCCUUUCUUCUU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9851_c1_g2_1385_TPlot.pdf
TRINITY_DN9851_c1_g2:1386	si_s78	TRINITY_DN9851_c1_g2	1375	1395	1386	-26.20	-18.00	0.687022900763359	8	3-12,1393-1384;14-20,1382-1376	1-2,1395-1394[UP5];13-13,1383-1383[SIL];21-21,1375-1375[UP3]	.(((((((.((((((((((..&..)))))))))).))))))).	CGAAGAAACGAGAGAGGAACG&UUUUUUUCUUUCCUUUCUUCU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9851_c1_g2_1386_TPlot.pdf
TRINITY_DN9851_c1_g2:1387	si_s77	TRINITY_DN9851_c1_g2	1376	1396	1387	-25.50	-17.70	0.694117647058824	9	4-13,1393-1384;15-21,1382-1376	1-3,1396-1394[UP5];14-14,1383-1383[SIL]	(((((((.((((((((((...&...)))))))))).)))))))	GAAGAAACGAGAGAGGAACGA&UUUUUUUUCUUUCCUUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN9851_c1_g2_1387_TPlot.pdf
TRINITY_DN9851_c1_g2:1388	si_s83	TRINITY_DN9851_c1_g2	1376	1397	1388	-30.90	-20.60	0.666666666666667	5.5	1-3,1397-1395;5-14,1393-1384;16-21,1381-1376	4-4,1394-1394[SIL];15-15,1383-1382[AILt]	((((((..((((((((((.(((&))).))))))))))-.))))))	GAAGAAACGAGAGAGGAACGAA&UUCUUUCCUUUCUU-CUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9851_c1_g2_1388_TPlot.pdf
TRINITY_DN9851_c1_g2:2250	si_s516	TRINITY_DN9851_c1_g2	2235	2259	2250	-25.80	-18.30	0.709302325581395	8	1-13,2259-2247;14-20,2242-2236	x-x,2246-2243[BULt];21-21,2235-2235[UP3]	.(((((((....(((((((((((((&)))))))))))))----))))))).	UAUUUCGAGUGUAUUGAGGAUAUGG&CUAUAUUCUUAAU----UCGAAAUC	3	0.384827563209412	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s516_TRINITY_DN9851_c1_g2_2250_TPlot.pdf
TRINITY_DN9851_c1_g2:3417	si_a464	TRINITY_DN9851_c1_g2	3406	3427	3417	-19.60	-12.90	0.658163265306122	4	1-9,3427-3419;10-17,3417-3410;20-21,3407-3406	x-x,3418-3418[BULt];18-19,3409-3408[SIL]	((..((((((((.(((((((((&)))))))))-))))))))..))	AAGUAUUACAUAUUUAUAUAUA&UAUAUAUAA-UAUGUAAUUAUU	2	0.996817603535301	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a464_TRINITY_DN9851_c1_g2_3417_TPlot.pdf
TRINITY_DN9851_c1_g2:3419	si_a463	TRINITY_DN9851_c1_g2	3407	3428	3419	-19.70	-12.90	0.654822335025381	6	2-10,3427-3419;11-18,3417-3410	1-1,3428-3428[UP5];x-x,3418-3418[BULt];19-21,3409-3407[UP3]	...((((((((.(((((((((.&.)))))))))-))))))))...	AGUAUUACAUAUUUAUAUAUAU&UUAUAUAUAA-UAUGUAAUUAU	2	0.998472989752493	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a463_TRINITY_DN9851_c1_g2_3419_TPlot.pdf
TRINITY_DN9851_c1_g2:3423	si_a461	TRINITY_DN9851_c1_g2	3409	3432	3423	-21.50	-16.60	0.772093023255814	8	1-11,3432-3422;12-20,3418-3410	x-x,3421-3419[BULt];21-21,3409-3409[UP3]	.(((((((((...(((((((((((&)))))))))))---))))))))).	UAUUACAUAUUUAUAUAUAUAGCA&UGUUAUAUAUA---AUAUGUAAUU	2	0.3845489125319	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a461_TRINITY_DN9851_c1_g2_3423_TPlot.pdf
TRINITY_DN9851_c1_g2:3424	si_a460	TRINITY_DN9851_c1_g2	3410	3433	3424	-21.60	-16.80	0.777777777777778	8	2-12,3432-3422;13-21,3418-3410	1-1,3433-3433[UP5];x-x,3421-3419[BULt]	(((((((((...(((((((((((.&.)))))))))))---)))))))))	AUUACAUAUUUAUAUAUAUAGCAU&UUGUUAUAUAUA---AUAUGUAAU	2	0.407105171671655	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a460_TRINITY_DN9851_c1_g2_3424_TPlot.pdf
TRINITY_DN9851_c1_g2:3425	si_a459	TRINITY_DN9851_c1_g2	3411	3434	3425	-23.20	-15.80	0.681034482758621	7	3-13,3432-3422;14-21,3418-3411	1-2,3434-3433[UP5];x-x,3421-3419[BULt]	((((((((...(((((((((((..&..)))))))))))---))))))))	UUACAUAUUUAUAUAUAUAGCAUU&GUUGUUAUAUAUA---AUAUGUAA	0	0.107802468626861	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN9851_c1_g2_3425_TPlot.pdf
TRINITY_DN9851_c1_g2:995	si_a499	TRINITY_DN9851_c1_g2	983	1006	995	-35.20	-24.00	0.681818181818182	6.5	1-4,1006-1003;5-16,1000-989;17-21,987-983	x-x,1002-1001[BULt];x-x,988-988[BULt]	(((((.((((((((((((..((((&))))--))))))))))))-)))))	CUGGGAGAAGACGAAAAAAUCGAC&GUCG--UUUUUCGUCUUC-CUUGG	3	0.999999905516913	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN9851_c1_g2_995_TPlot.pdf
TRINITY_DN9851_c1_g2:996	si_a498	TRINITY_DN9851_c1_g2	984	1007	996	-33.50	-21.90	0.653731343283582	8	2-5,1006-1003;6-17,1000-989;18-20,987-985	1-1,1007-1007[UP5];x-x,1002-1001[BULt];x-x,988-988[BULt];21-21,984-984[UP3]	.(((.((((((((((((..((((.&.))))--))))))))))))-))).	UGGGAGAAGACGAAAAAAUCGACG&UGUCG--UUUUUCGUCUUC-CUUG	3	0.999999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9851_c1_g2_996_TPlot.pdf
TRINITY_DN9851_c1_g2:997	si_a497	TRINITY_DN9851_c1_g2	985	1008	997	-32.00	-21.60	0.675	9	3-6,1006-1003;7-18,1000-989;19-21,987-985	1-2,1008-1007[UP5];x-x,1002-1001[BULt];x-x,988-988[BULt]	(((.((((((((((((..((((..&..))))--))))))))))))-)))	GGGAGAAGACGAAAAAAUCGACGA&AUGUCG--UUUUUCGUCUUC-CUU	2	0.999999984145188	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN9851_c1_g2_997_TPlot.pdf
TRINITY_DN9851_c1_g2:998	si_a496	TRINITY_DN9851_c1_g2	986	1009	998	-32.40	-21.30	0.657407407407407	10.5	4-7,1006-1003;8-19,1000-989;20-21,987-986	1-3,1009-1007[UP5];x-x,1002-1001[BULt];x-x,988-988[BULt]	((.((((((((((((..((((...&...))))--))))))))))))-))	GGAGAAGACGAAAAAAUCGACGAG&UAUGUCG--UUUUUCGUCUUC-CU	2	0.999999981127249	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN9851_c1_g2_998_TPlot.pdf
TRINITY_DN9851_c2_g1:1684	si_a22	TRINITY_DN9851_c2_g1	1673	1693	1684	-23.50	-15.40	0.65531914893617	6	2-13,1692-1681;15-19,1679-1675	1-1,1693-1693[UP5];14-14,1680-1680[SIL];20-21,1674-1673[UP3]	..(((((.((((((((((((.&.)))))))))))).)))))..	AAUAGAAGUAGAAAUAAAUGA&CUAUUUAUUUUUAGUUCUAAG	4	0.99999860059085	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a22_TRINITY_DN9851_c2_g1_1684_TPlot.pdf
TRINITY_DN9851_c2_g1:2990	si_a322	TRINITY_DN9851_c2_g1	2979	3000	2990	-27.00	-18.70	0.692592592592593	8.5	1-4,3000-2997;6-8,2994-2992;11-21,2989-2979	5-5,2996-2995[AILt];9-10,2991-2990[SIL]	(((((((((((..(((..((((&))))-.)))..)))))))))))	AGGAAUGAAAAUUUCAAAGGAU&AUCC-AUGAUUUUUUUAUUCCU	3	0.99925848453299	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9851_c2_g1_2990_TPlot.pdf
TRINITY_DN9851_c2_g1:2991	si_a321	TRINITY_DN9851_c2_g1	2980	3001	2991	-26.70	-18.40	0.689138576779026	9	1-5,3001-2997;7-9,2994-2992;12-21,2989-2980	6-6,2996-2995[AILt];10-11,2991-2990[SIL]	((((((((((..(((..(((((&)))))-.)))..))))))))))	GGAAUGAAAAUUUCAAAGGAUG&UAUCC-AUGAUUUUUUUAUUCC	2	0.976975193397669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9851_c2_g1_2991_TPlot.pdf
TRINITY_DN9851_c2_g1:3404	si_s88	TRINITY_DN9851_c2_g1	3394	3414	3404	-34.80	-23.80	0.683908045977012	5.5	1-6,3414-3409;7-16,3407-3398;18-20,3397-3395	x-x,3408-3408[BULt];17-17,x-x[BULq];21-21,3394-3394[UP3]	.(((-((((((((((.((((((&))))))-)))))))))).))).	AGAG-GAAGAAGAAGAAGAGGA&UCCUUU-CUUCUUCUUCGCUUC	3	0.999999999956019	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN9851_c2_g1_3404_TPlot.pdf
TRINITY_DN9851_c2_g1:3406	si_s86	TRINITY_DN9851_c2_g1	3396	3416	3406	-32.90	-23.60	0.717325227963526	5	2-8,3415-3409;9-18,3407-3398;20-21,3397-3396	1-1,3416-3416[UP5];x-x,3408-3408[BULt];19-19,x-x[BULq]	((-((((((((((.(((((((.&.)))))))-)))))))))).))	AG-GAAGAAGAAGAAGAGGAAG&UUUCCUUU-CUUCUUCUUCGCU	2	0.999939956558842	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9851_c2_g1_3406_TPlot.pdf
TRINITY_DN9851_c2_g1:3407	si_s85	TRINITY_DN9851_c2_g1	3396	3417	3407	-33.80	-24.00	0.710059171597633	7	2-9,3416-3409;10-19,3407-3398	1-1,3417-3417[UP5];x-x,3408-3408[BULt];20-21,3397-3396[UP3]	..((((((((((.((((((((.&.))))))))-))))))))))..	AGGAAGAAGAAGAAGAGGAAGA&CUUUCCUUU-CUUCUUCUUCGC	4	0.999999559533988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN9851_c2_g1_3407_TPlot.pdf
TRINITY_DN9855_c0_g1:1306	si_s76	TRINITY_DN9855_c0_g1	1296	1315	1306	-23.60	-16.40	0.694915254237288	8	4-12,1312-1304;14-21,1303-1296	1-3,1315-1313[UP5];13-13,x-x[BULq]	((((((((-(((((((((...&...))))))))).))))))))	AAGAGGGG-AAGAAAAAGCUC&AUUUUUUUUCUUUCCUUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s76_TRINITY_DN9855_c0_g1_1306_TPlot.pdf
TRINITY_DN9855_c0_g1:1307	si_s75	TRINITY_DN9855_c0_g1	1296	1316	1307	-24.00	-16.00	0.666666666666667	11.5	5-19,1312-1298	1-4,1316-1313[UP5];20-21,1297-1296[UP3]	..(((((((((((((((....&....)))))))))))))))..	AAGAGGGGAAGAAAAAGCUCA&UAUUUUUUUUCUUUCCUUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s75_TRINITY_DN9855_c0_g1_1307_TPlot.pdf
TRINITY_DN9855_c0_g1:3168	si_a59	TRINITY_DN9855_c0_g1	3157	3177	3168	-34.00	-23.60	0.694117647058824	11	1-3,3177-3175;6-18,3172-3160	4-5,3174-3173[SIL];19-21,3159-3157[UP3]	...(((((((((((((..(((&)))..)))))))))))))...	UCAUGAGGGAGGCGGGCGGGC&GUCGACUCGCUUCUUUCAAAU	4	0.98019950250615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a59_TRINITY_DN9855_c0_g1_3168_TPlot.pdf
TRINITY_DN9859_c1_g1:1400	si_s85	TRINITY_DN9859_c1_g1	1388	1410	1400	-33.80	-22.90	0.677514792899408	6	1-5,1410-1406;6-14,1404-1396;15-16,1394-1393;18-21,1391-1388	x-x,1405-1405[BULt];x-x,1395-1395[BULt];17-17,1392-1392[SIL]	((((.((.(((((((((.(((((&)))))-)))))))))-)).))))	GCGACGACAGGAGAAGGAGAAAG&CUUUC-CUUUCUUCU-UCUUCGC	4	0.999999999999814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s85_TRINITY_DN9859_c1_g1_1400_TPlot.pdf
TRINITY_DN9859_c1_g1:1402	si_s89	TRINITY_DN9859_c1_g1	1384	1411	1402	-35.30	-24.80	0.702549575070822	10	2-13,1410-1399;14-20,1391-1385	1-1,1411-1411[UP5];x-x,1398-1392[BULt];21-21,1384-1384[UP3]	.(((((((.......((((((((((((.&.))))))))))))-------))))))).	AGAAGCGACGACAGGAGAAGGAGAAAGU&CCUUUCUUCUUCU-------UCGCUUCG	2	0.999822692898121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9859_c1_g1_1402_TPlot.pdf
TRINITY_DN9859_c1_g1:1403	si_s88	TRINITY_DN9859_c1_g1	1385	1413	1403	-34.80	-25.40	0.729885057471264	10	1-2,1413-1412;3-14,1410-1399;15-21,1391-1385	x-x,1411-1411[BULt];x-x,1398-1392[BULt]	(((((((.......((((((((((((.((&))-))))))))))))-------)))))))	GAAGCGACGACAGGAGAAGGAGAAAGUGA&UC-CUUUCUUCUUCU-------UCGCUUC	4	0.99984514209255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN9859_c1_g1_1403_TPlot.pdf
TRINITY_DN9859_c1_g1:1408	si_s83	TRINITY_DN9859_c1_g1	1397	1418	1408	-30.90	-21.30	0.689320388349515	9	3-4,1416-1415;6-7,1413-1412;8-21,1410-1397	1-2,1418-1417[UP5];5-5,1414-1414[SIL];x-x,1411-1411[BULt]	((((((((((((((.((.((..&..)).))-))))))))))))))	GGAGAAGGAGAAAGUGAUGGCC&UUCUUUC-CUUUCUUCUUCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN9859_c1_g1_1408_TPlot.pdf
TRINITY_DN9859_c1_g1:1409	si_s82	TRINITY_DN9859_c1_g1	1398	1425	1409	-28.90	-19.10	0.660899653979239	17	2-6,1424-1420;7-8,1413-1412;9-21,1410-1398	1-1,1425-1425[UP5];x-x,1419-1414[BULt];x-x,1411-1411[BULt]	(((((((((((((.((......(((((.&.)))))------))-)))))))))))))	GAGAAGGAGAAAGUGAUGGCCGAAGAGG&UUUCUU------UC-CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9859_c1_g1_1409_TPlot.pdf
TRINITY_DN9859_c1_g1:1410	si_s81	TRINITY_DN9859_c1_g1	1399	1426	1410	-28.90	-19.20	0.664359861591695	16.5	1-7,1426-1420;8-9,1413-1412;10-21,1410-1399	x-x,1419-1414[BULt];x-x,1411-1411[BULt]	((((((((((((.((......(((((((&)))))))------))-))))))))))))	AGAAGGAGAAAGUGAUGGCCGAAGAGGA&UUUUCUU------UC-CUUUCUUCUUCU	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9859_c1_g1_1410_TPlot.pdf
TRINITY_DN9859_c1_g1:1462	si_a498	TRINITY_DN9859_c1_g1	1445	1471	1462	-33.50	-21.90	0.653731343283582	11.5	1-11,1471-1461;13-15,1459-1457;16-19,1450-1447	12-12,1460-1460[SIL];x-x,1456-1451[BULt];20-21,1446-1445[UP3]	..((((......(((.(((((((((((&))))))))))).)))------))))..	UUGGGAACUAAAAGAGGAGAAACGACA&UGUCGUUUUUCGUCU------UCCUUG	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9859_c1_g1_1462_TPlot.pdf
TRINITY_DN9859_c1_g1:1463	si_a497	TRINITY_DN9859_c1_g1	1446	1472	1463	-32.00	-21.90	0.684375	10.5	2-12,1471-1461;14-16,1459-1457;17-20,1450-1447	1-1,1472-1472[UP5];13-13,1460-1460[SIL];x-x,1456-1451[BULt];21-21,1446-1446[UP3]	.((((......(((.(((((((((((.&.))))))))))).)))------)))).	UGGGAACUAAAAGAGGAGAAACGACAG&AUGUCGUUUUUCGUCU------UCCUU	2	0.999999554569621	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN9859_c1_g1_1463_TPlot.pdf
TRINITY_DN9859_c1_g1:1561	si_s437	TRINITY_DN9859_c1_g1	1550	1570	1561	-19.70	-13.90	0.705583756345178	8	1-15,1570-1556	16-21,1555-1550[UP3]	......(((((((((((((((&)))))))))))))))......	UUCUACAUAAUAUGUAGUUGU&AUAAUUACAUAUUAUAUAUAA	2	0.974246062652058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s437_TRINITY_DN9859_c1_g1_1561_TPlot.pdf
TRINITY_DN9859_c1_g1:1562	si_s436	TRINITY_DN9859_c1_g1	1551	1571	1562	-19.60	-14.80	0.755102040816326	7	1-16,1571-1556	17-21,1555-1551[UP3]	.....((((((((((((((((&)))))))))))))))).....	UCUACAUAAUAUGUAGUUGUU&AAUAAUUACAUAUUAUAUAUA	2	0.788972876020262	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s436_TRINITY_DN9859_c1_g1_1562_TPlot.pdf
TRINITY_DN9859_c1_g1:1563	si_s435	TRINITY_DN9859_c1_g1	1552	1572	1563	-20.90	-14.90	0.712918660287081	7	2-17,1571-1556	1-1,1572-1572[UP5];18-21,1555-1552[UP3]	....((((((((((((((((.&.))))))))))))))))....	CUACAUAAUAUGUAGUUGUUU&CAAUAAUUACAUAUUAUAUAU	4	0.925796001175221	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s435_TRINITY_DN9859_c1_g1_1563_TPlot.pdf
TRINITY_DN9859_c1_g1:1565	si_s433	TRINITY_DN9859_c1_g1	1554	1575	1565	-21.10	-16.50	0.781990521327014	6	1-5,1575-1571;6-19,1569-1556	x-x,1570-1570[BULt];20-21,1555-1554[UP3]	..((((((((((((((.(((((&)))))-))))))))))))))..	ACAUAAUAUGUAGUUGUUUGUU&AACAA-UAAUUACAUAUUAUAU	3	0.517502238781835	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s433_TRINITY_DN9859_c1_g1_1565_TPlot.pdf
TRINITY_DN9859_c1_g1:1568	si_s430	TRINITY_DN9859_c1_g1	1557	1578	1568	-21.30	-16.50	0.774647887323944	7	3-8,1576-1571;9-21,1569-1557	1-2,1578-1577[UP5];x-x,1570-1570[BULt]	(((((((((((((.((((((..&..))))))-)))))))))))))	UAAUAUGUAGUUGUUUGUUAGA&UAUAACAA-UAAUUACAUAUUA	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s430_TRINITY_DN9859_c1_g1_1568_TPlot.pdf
TRINITY_DN9859_c1_g1:1569	si_s429	TRINITY_DN9859_c1_g1	1558	1579	1569	-21.10	-15.10	0.71563981042654	8.5	4-9,1576-1571;10-21,1569-1558	1-3,1579-1577[UP5];x-x,1570-1570[BULt]	((((((((((((.((((((...&...))))))-))))))))))))	AAUAUGUAGUUGUUUGUUAGAA&AUAUAACAA-UAAUUACAUAUU	3	0.915394080923566	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s429_TRINITY_DN9859_c1_g1_1569_TPlot.pdf
TRINITY_DN9859_c1_g1:1571	si_s428	TRINITY_DN9859_c1_g1	1559	1580	1571	-21.50	-14.40	0.669767441860465	10.5	5-10,1576-1571;11-21,1569-1559	1-4,1580-1577[UP5];x-x,1570-1570[BULt]	(((((((((((.((((((....&....))))))-)))))))))))	AUAUGUAGUUGUUUGUUAGAAC&UAUAUAACAA-UAAUUACAUAU	4	0.994142002154699	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s428_TRINITY_DN9859_c1_g1_1571_TPlot.pdf
TRINITY_DN9859_c1_g1:411	si_a380	TRINITY_DN9859_c1_g1	398	420	411	-24.00	-15.98	0.665833333333333	11	4-15,417-406;18-21,401-398	1-3,420-418[UP5];16-17,405-402[AILt]	((((....((((((((((((...&...))))))))))))--..))))	AUUCGAAGGGUUCGAAGUCAAAG&AAAUGAUUUCGAAUU--AAGAAU	3	0.967327205479708	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a380_TRINITY_DN9859_c1_g1_411_TPlot.pdf
TRINITY_DN9859_c1_g1:496	si_a181	TRINITY_DN9859_c1_g1	485	505	496	-32.00	-21.90	0.684375	6	1-11,505-495;13-14,493-492;16-19,490-487	12-12,494-494[SIL];15-15,491-491[SIL];20-21,486-485[UP3]	..((((.((.(((((((((((&))))))))))).)).))))..	CUGGGAUAGUUAUUAUCUGGA&UCUAGAUAAUAUCUUUCCCUG	4	0.691679195400142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a181_TRINITY_DN9859_c1_g1_496_TPlot.pdf
TRINITY_DN985_c0_g1:1231	si_s296	TRINITY_DN985_c0_g1	1220	1240	1231	-31.60	-21.70	0.686708860759494	7.5	1-7,1240-1234;10-19,1231-1222	8-9,1233-1232[SIL];20-21,1221-1220[UP3]	..((((((((((..(((((((&)))))))..))))))))))..	AAUUUCGCGAUUAGGAUCGAC&GUCGAUUGGAAUUGCGAAAAU	2	0.820497929971367	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s296_TRINITY_DN985_c0_g1_1231_TPlot.pdf
TRINITY_DN985_c0_g1:1232	si_s295	TRINITY_DN985_c0_g1	1221	1241	1232	-32.20	-21.90	0.680124223602484	7.5	2-8,1240-1234;11-20,1231-1222	1-1,1241-1241[UP5];9-10,1233-1232[SIL];21-21,1221-1221[UP3]	.((((((((((..(((((((.&.)))))))..)))))))))).	AUUUCGCGAUUAGGAUCGACC&AGUCGAUUGGAAUUGCGAAAA	2	0.808972483289184	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s295_TRINITY_DN985_c0_g1_1232_TPlot.pdf
TRINITY_DN985_c0_g1:1233	si_s294	TRINITY_DN985_c0_g1	1222	1242	1233	-32.60	-21.70	0.665644171779141	8.5	3-9,1240-1234;12-21,1231-1222	1-2,1242-1241[UP5];10-11,1233-1232[SIL]	((((((((((..(((((((..&..)))))))..))))))))))	UUUCGCGAUUAGGAUCGACCA&UAGUCGAUUGGAAUUGCGAAA	4	0.986344469549255	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s294_TRINITY_DN985_c0_g1_1233_TPlot.pdf
TRINITY_DN985_c0_g1:415	si_a411	TRINITY_DN985_c0_g1	404	424	415	-17.90	-11.70	0.653631284916201	8	3-17,422-408	1-2,424-423[UP5];18-21,407-404[UP3]	....(((((((((((((((..&..)))))))))))))))....	GAUGAUUUAAAUAUAAAUACA&UUUGUUUAUAUUUAAAUAAAU	4	0.999999999998731	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a411_TRINITY_DN985_c0_g1_415_TPlot.pdf
TRINITY_DN985_c0_g1:416	si_a410	TRINITY_DN985_c0_g1	405	425	416	-17.80	-11.70	0.657303370786517	9	4-18,422-408	1-3,425-423[UP5];19-21,407-405[UP3]	...(((((((((((((((...&...)))))))))))))))...	AUGAUUUAAAUAUAAAUACAA&UUUUGUUUAUAUUUAAAUAAA	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN985_c0_g1_416_TPlot.pdf
TRINITY_DN985_c0_g1:448	si_s77	TRINITY_DN985_c0_g1	434	457	448	-25.50	-17.84	0.699607843137255	9.5	3-16,455-442;18-21,437-434	1-2,457-456[UP5];17-17,441-438[AILt]	((((....((((((((((((((..&..))))))))))))))---.))))	GAAGCCCUGAGGAAAGAAGGAAUU&UUUUUUUUCUUUCCUU---UCUUC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN985_c0_g1_448_TPlot.pdf
TRINITY_DN985_c0_g1:670	si_s60	TRINITY_DN985_c0_g1	659	679	670	-28.20	-19.10	0.677304964539007	12	4-15,676-665	1-3,679-677[UP5];16-21,664-659[UP3]	......((((((((((((...&...))))))))))))......	GUUGGUGAAGUUGCUAGCAUA&CAAGUUAGCAACUUCUAUUUU	3	0.985753027097021	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s60_TRINITY_DN985_c0_g1_670_TPlot.pdf
TRINITY_DN985_c0_g1:671	si_s59	TRINITY_DN985_c0_g1	660	680	671	-29.20	-19.10	0.654109589041096	13	5-16,676-665	1-4,680-677[UP5];17-21,664-660[UP3]	.....((((((((((((....&....)))))))))))).....	UUGGUGAAGUUGCUAGCAUAC&UCAAGUUAGCAACUUCUAUUU	3	0.989694861242468	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s59_TRINITY_DN985_c0_g1_671_TPlot.pdf
TRINITY_DN985_c0_g1:673	si_s57	TRINITY_DN985_c0_g1	662	682	673	-29.30	-19.10	0.651877133105802	15	7-18,676-665	1-6,682-677[UP5];19-21,664-662[UP3]	...((((((((((((......&......))))))))))))...	GGUGAAGUUGCUAGCAUACUC&UUUCAAGUUAGCAACUUCUAU	4	0.996713504407093	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s57_TRINITY_DN985_c0_g1_673_TPlot.pdf
TRINITY_DN985_c0_g1:674	si_s56	TRINITY_DN985_c0_g1	663	683	674	-29.20	-19.10	0.654109589041096	16	8-19,676-665	1-7,683-677[UP5];20-21,664-663[UP3]	..((((((((((((.......&.......))))))))))))..	GUGAAGUUGCUAGCAUACUCG&AUUUCAAGUUAGCAACUUCUA	3	0.994385644231978	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s56_TRINITY_DN985_c0_g1_674_TPlot.pdf
TRINITY_DN985_c1_g1:2025	si_s440	TRINITY_DN985_c1_g1	2014	2034	2025	-21.60	-14.30	0.662037037037037	5.5	3-13,2032-2022;16-21,2019-2014	1-2,2034-2033[UP5];14-15,2021-2020[SIL]	((((((..(((((((((((..&..)))))))))))..))))))	UUGUUGAUUAUAAUAUGUAUU&AUUACAUAUUAUAUAUAACAA	4	0.999369704734898	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN985_c1_g1_2025_TPlot.pdf
TRINITY_DN9861_c0_g1:1554	si_a358	TRINITY_DN9861_c0_g1	1542	1563	1554	-29.10	-19.10	0.656357388316151	7.5	3-12,1561-1552;13-18,1550-1545;20-20,1543-1543	1-2,1563-1562[UP5];x-x,1551-1551[BULt];19-19,1544-1544[SIL];21-21,1542-1542[UP3]	.(.((((((.((((((((((..&..))))))))))-)))))).).	CGUUCCGGUGCAAAAUAGAAAA&AAUUCUAUUUUG-AUCGGAUCA	2	0.989873797618439	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a358_TRINITY_DN9861_c0_g1_1554_TPlot.pdf
TRINITY_DN9861_c0_g1:1621	si_a641	TRINITY_DN9861_c0_g1	1610	1630	1621	-23.60	-15.90	0.673728813559322	8	3-17,1628-1614	1-2,1630-1629[UP5];18-21,1613-1610[UP3]	....(((((((((((((((..&..)))))))))))))))....	CAGGAUAUUACUCAAGAAAUU&AUUUUUUUGAGUAAUAUAUCG	3	0.999689491897871	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a641_TRINITY_DN9861_c0_g1_1621_TPlot.pdf
TRINITY_DN9861_c0_g1:1625	si_a637	TRINITY_DN9861_c0_g1	1614	1639	1625	-25.80	-16.80	0.651162790697674	14	1-3,1639-1637;4-5,1631-1630;7-21,1628-1614	x-x,1636-1632[BULt];6-6,1629-1629[SIL]	(((((((((((((((.((.....(((&)))-----)).)))))))))))))))	AUAUUACUCAAGAAAUUUUUUAAGAC&GUC-----GAUUUUUUUGAGUAAUAU	2	0.999999929401356	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN9861_c0_g1_1625_TPlot.pdf
TRINITY_DN9861_c0_g1:3554	si_s248	TRINITY_DN9861_c0_g1	3542	3562	3554	-31.90	-21.40	0.670846394984326	9.5	3-6,3560-3557;9-12,3555-3552;13-21,3550-3542	1-2,3562-3561[UP5];7-8,3556-3556[AILq];x-x,3551-3551[BULt]	(((((((((.((((.-((((..&..))))..))))-)))))))))	UAAUGUAUCAGGGAU-UGCCAU&UAGGCAUUUCCC-GAUAUAUUA	2	0.924889803507448	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s248_TRINITY_DN9861_c0_g1_3554_TPlot.pdf
TRINITY_DN9861_c0_g1:3783	si_s486	TRINITY_DN9861_c0_g1	3771	3792	3783	-18.10	-12.10	0.668508287292818	6.5	1-6,3792-3787;8-10,3785-3783;11-21,3781-3771	7-7,3786-3786[SIL];x-x,3782-3782[BULt]	(((((((((((.(((.((((((&)))))).)))-)))))))))))	GUUUAUGUUUGUAAUCAGUAUA&UAUAUUUAUU-UAAAUAUAAAC	4	0.999158503873296	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN9861_c0_g1_3783_TPlot.pdf
TRINITY_DN9867_c0_g1:1060	si_s558	TRINITY_DN9867_c0_g1	1047	1069	1060	-28.20	-19.80	0.702127659574468	10	3-10,1067-1060;11-19,1057-1049	1-2,1069-1068[UP5];x-x,1059-1058[BULt];20-21,1048-1047[UP3]	..(((((((((..((((((((..&..))))))))--)))))))))..	AGGUCCCGAAACUGUAUUAAUAG&GAAUUAAUAU--UUUCGGGACAA	4	0.885530595135767	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN9867_c0_g1_1060_TPlot.pdf
TRINITY_DN9867_c0_g1:2008	si_a416	TRINITY_DN9867_c0_g1	1996	2017	2008	-20.50	-13.80	0.673170731707317	6	2-6,2016-2012;8-16,2010-2002;17-21,2000-1996	1-1,2017-2017[UP5];7-7,2011-2011[SIL];x-x,2001-2001[BULt]	(((((.(((((((((.(((((.&.))))).)))))))))-)))))	CCUGUAGUUUAUUUAUAUAUGU&UUAUAUUUAAAUAAAU-AUAGG	4	0.974633855995587	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a416_TRINITY_DN9867_c0_g1_2008_TPlot.pdf
TRINITY_DN9870_c0_g1:299	si_s809	TRINITY_DN9870_c0_g1	287	308	299	-28.50	-20.50	0.719298245614035	8	1-15,308-294;16-17,292-291	x-x,293-293[BULt];18-21,290-287[UP3]	....((.(((((((((((((((&)))))))))))))))-))....	GGUCAGCAGAAGGUGGCGAAGG&UCUUCGUUACCUUUU-CUUAAU	4	0.997381096081754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s809_TRINITY_DN9870_c0_g1_299_TPlot.pdf
TRINITY_DN9870_c0_g1:305	si_s803	TRINITY_DN9870_c0_g1	294	314	305	-26.00	-22.20	0.853846153846154	10.5	5-21,310-294	1-4,314-311[UP5]	(((((((((((((((((....&....)))))))))))))))))	AGAAGGUGGCGAAGGUGUGUU&AUUUUAUCUUCGUUACCUUUU	4	0.235360400085516	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN9870_c0_g1_305_TPlot.pdf
TRINITY_DN9872_c0_g1:1323	si_a336	TRINITY_DN9872_c0_g1	1312	1332	1323	-31.20	-21.40	0.685897435897436	11	3-15,1330-1318	1-2,1332-1331[UP5];16-21,1317-1312[UP3]	......(((((((((((((..&..)))))))))))))......	AUACAAUCGGGAUGAGGAAAU&UAUUCCUUGUCCCGAAAAUAU	3	0.956621808508615	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a336_TRINITY_DN9872_c0_g1_1323_TPlot.pdf
TRINITY_DN9872_c0_g1:1324	si_a335	TRINITY_DN9872_c0_g1	1313	1333	1324	-31.10	-21.40	0.688102893890675	12	4-16,1330-1318	1-3,1333-1331[UP5];17-21,1317-1313[UP3]	.....(((((((((((((...&...))))))))))))).....	UACAAUCGGGAUGAGGAAAUU&UUAUUCCUUGUCCCGAAAAUA	2	0.86849655891337	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a335_TRINITY_DN9872_c0_g1_1324_TPlot.pdf
TRINITY_DN9872_c0_g1:1326	si_a333	TRINITY_DN9872_c0_g1	1315	1335	1326	-30.60	-21.40	0.699346405228758	14	6-18,1330-1318	1-5,1335-1331[UP5];19-21,1317-1315[UP3]	...(((((((((((((.....&.....)))))))))))))...	CAAUCGGGAUGAGGAAAUUGU&UUUUAUUCCUUGUCCCGAAAA	4	0.983892524628202	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN9872_c0_g1_1326_TPlot.pdf
TRINITY_DN9872_c0_g1:1327	si_a332	TRINITY_DN9872_c0_g1	1316	1336	1327	-30.60	-21.40	0.699346405228758	14.5	7-19,1330-1318	1-6,1336-1331[UP5];20-21,1317-1316[UP3]	..(((((((((((((......&......)))))))))))))..	AAUCGGGAUGAGGAAAUUGUG&UUUUUAUUCCUUGUCCCGAAA	4	0.9933696205505	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a332_TRINITY_DN9872_c0_g1_1327_TPlot.pdf
TRINITY_DN9872_c0_g1:1329	si_a330	TRINITY_DN9872_c0_g1	1318	1338	1329	-30.50	-21.20	0.695081967213115	16	9-21,1330-1318	1-8,1338-1331[UP5]	(((((((((((((........&........)))))))))))))	UCGGGAUGAGGAAAUUGUGAU&UUUUUUUAUUCCUUGUCCCGA	4	0.998754383045004	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a330_TRINITY_DN9872_c0_g1_1329_TPlot.pdf
TRINITY_DN9872_c0_g1:1330	si_a322	TRINITY_DN9872_c0_g1	1319	1339	1330	-27.00	-18.10	0.67037037037037	10.5	4-20,1336-1320	1-3,1339-1337[UP5];21-21,1319-1319[UP3]	.(((((((((((((((((...&...))))))))))))))))).	CGGGAUGAGGAAAUUGUGAUU&AUCCAUGAUUUUUUUAUUCCU	4	0.999993684908022	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9872_c0_g1_1330_TPlot.pdf
TRINITY_DN9872_c0_g1:1331	si_a321	TRINITY_DN9872_c0_g1	1320	1340	1331	-26.70	-17.80	0.666666666666667	11	5-21,1336-1320	1-4,1340-1337[UP5]	(((((((((((((((((....&....)))))))))))))))))	GGGAUGAGGAAAUUGUGAUUU&UAUCCAUGAUUUUUUUAUUCC	2	0.996258695104733	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9872_c0_g1_1331_TPlot.pdf
TRINITY_DN9872_c0_g1:613	si_a405	TRINITY_DN9872_c0_g1	603	622	613	-19.80	-12.90	0.651515151515151	7.5	2-13,621-610;15-19,609-605	1-1,622-622[UP5];14-14,x-x[BULq];20-21,604-603[UP3]	..(((((-((((((((((((.&.)))))))))))).)))))..	GAAGAUG-GAGCAAAACGAUG&AAUUGUUUUGUUUAUAUUUAA	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a405_TRINITY_DN9872_c0_g1_613_TPlot.pdf
TRINITY_DN9872_c0_g1:967	si_s611	TRINITY_DN9872_c0_g1	956	976	967	-28.20	-22.60	0.801418439716312	3.5	1-12,976-965;14-21,963-956	13-13,964-964[SIL]	((((((((.((((((((((((&)))))))))))).))))))))	UUGCUUGGCUUUAAGGAAGAU&AUCUUUUUUAAAUCCAAGCGA	4	0.0204307639779497	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s611_TRINITY_DN9872_c0_g1_967_TPlot.pdf
TRINITY_DN9875_c0_g1:549	si_a125	TRINITY_DN9875_c0_g1	537	558	549	-25.00	-16.70	0.668	10	1-11,558-548;13-17,545-541	12-12,547-546[AILt];18-21,540-537[UP3]	....(((((..(((((((((((&)))))))))))-.)))))....	UUGGACUAUAAGCUGUAAAGCA&UGUUUUAUAGC-AAUAGUAAUU	3	0.998264695493617	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a125_TRINITY_DN9875_c0_g1_549_TPlot.pdf
TRINITY_DN9875_c0_g1:550	si_a124	TRINITY_DN9875_c0_g1	538	559	550	-25.10	-16.90	0.673306772908366	9	2-12,558-548;14-18,545-541	1-1,559-559[UP5];13-13,547-546[AILt];19-21,540-538[UP3]	...(((((..(((((((((((.&.)))))))))))-.)))))...	UGGACUAUAAGCUGUAAAGCAG&UUGUUUUAUAGC-AAUAGUAAU	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a124_TRINITY_DN9875_c0_g1_550_TPlot.pdf
TRINITY_DN9876_c2_g4:859	si_s633	TRINITY_DN9876_c2_g4	847	868	859	-37.90	-25.10	0.662269129287599	8	2-10,867-859;12-13,857-856;14-20,854-848	1-1,868-868[UP5];11-11,858-858[SIL];x-x,855-855[BULt];21-21,847-847[UP3]	.(((((((.((.(((((((((.&.))))))))).))-))))))).	UGGGCAAAUCGGCUAUGGAAGA&CUUUUCGUAGGCG-UUUGCCCU	3	0.999830831685509	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s633_TRINITY_DN9876_c2_g4_859_TPlot.pdf
TRINITY_DN9876_c2_g4:870	si_a499	TRINITY_DN9876_c2_g4	859	879	870	-35.20	-27.80	0.789772727272727	4.5	1-3,879-877;5-17,875-863;19-21,861-859	4-4,876-876[SIL];18-18,862-862[SIL]	(((.(((((((((((((.(((&))).))))))))))))).)))	CUAUGGAAGACGAAAAAGGGC&GUCGUUUUUCGUCUUCCUUGG	4	0.493989494463571	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN9876_c2_g4_870_TPlot.pdf
TRINITY_DN9876_c2_g4:871	si_a498	TRINITY_DN9876_c2_g4	860	880	871	-33.50	-26.60	0.794029850746269	6	1-4,880-877;6-18,875-863	5-5,876-876[SIL];19-21,862-860[UP3]	...(((((((((((((.((((&)))).)))))))))))))...	UAUGGAAGACGAAAAAGGGCA&UGUCGUUUUUCGUCUUCCUUG	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN9876_c2_g4_871_TPlot.pdf
TRINITY_DN9876_c2_g4:877	si_a492	TRINITY_DN9876_c2_g4	866	886	877	-30.20	-22.10	0.731788079470199	7	1-4,886-883;7-10,880-877;12-21,875-866	5-6,882-881[SIL];11-11,876-876[SIL]	((((((((((.((((..((((&))))..)))).))))))))))	AGACGAAAAAGGGCAAUUUCU&AGAAUAUGUCGUUUUUCGUCU	3	0.697110674497884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a492_TRINITY_DN9876_c2_g4_877_TPlot.pdf
TRINITY_DN9876_c2_g4:878	si_a491	TRINITY_DN9876_c2_g4	867	887	878	-29.90	-21.30	0.712374581939799	7.5	1-5,887-883;8-11,880-877;13-21,875-867	6-7,882-881[SIL];12-12,876-876[SIL]	(((((((((.((((..(((((&)))))..)))).)))))))))	GACGAAAAAGGGCAAUUUCUG&UAGAAUAUGUCGUUUUUCGUC	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a491_TRINITY_DN9876_c2_g4_878_TPlot.pdf
TRINITY_DN9878_c0_g1:460	si_s810	TRINITY_DN9878_c0_g1	447	472	460	-27.90	-18.60	0.666666666666667	10	1-6,472-467;7-13,463-457;14-20,454-448	x-x,466-464[BULt];x-x,456-455[BULt];21-21,447-447[UP3]	.(((((((..(((((((...((((((&))))))---)))))))--))))))).	AAUUAAGAAUAAAGGUGUACACGAAG&CUUCGU---UACCUUU--UCUUAAUA	3	0.999999957958114	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s810_TRINITY_DN9878_c0_g1_460_TPlot.pdf
TRINITY_DN9879_c0_g2:950	si_s691	TRINITY_DN9879_c0_g2	939	959	950	-26.20	-18.70	0.713740458015267	7.5	1-17,959-943	18-21,942-939[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCUUAUUGACUGGUUAAAUUC&GAGUUUAAUUAGUCGAUUUAU	4	0.782929820132298	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s691_TRINITY_DN9879_c0_g2_950_TPlot.pdf
TRINITY_DN9880_c0_g1:1369	si_a148	TRINITY_DN9880_c0_g1	1359	1378	1369	-30.30	-20.30	0.66996699669967	8	1-12,1378-1367;14-18,1366-1362	13-13,x-x[BULq];19-21,1361-1359[UP3]	...(((((-((((((((((((&)))))))))))).)))))...	ACAACCUU-GGACAACGGCGA&UCGUUGUUGUUUUAAGGUCAA	4	0.999985579703665	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a148_TRINITY_DN9880_c0_g1_1369_TPlot.pdf
TRINITY_DN9880_c0_g1:1373	si_a144	TRINITY_DN9880_c0_g1	1363	1382	1373	-27.40	-20.50	0.748175182481752	9	4-16,1379-1367;18-21,1366-1363	1-3,1382-1380[UP5];17-17,x-x[BULq]	((((-(((((((((((((...&...))))))))))))).))))	CCUU-GGACAACGGCGAUACU&UUAAUCGUUGUUGUUUUAAGG	4	0.4616631345951	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a144_TRINITY_DN9880_c0_g1_1373_TPlot.pdf
TRINITY_DN9880_c0_g1:1375	si_a142	TRINITY_DN9880_c0_g1	1364	1384	1375	-23.50	-15.90	0.676595744680851	15	6-18,1379-1367	1-5,1384-1380[UP5];19-21,1366-1364[UP3]	...(((((((((((((.....&.....)))))))))))))...	CUUGGACAACGGCGAUACUAU&AAUUAAUCGUUGUUGUUUUAA	2	0.999999742399378	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN9880_c0_g1_1375_TPlot.pdf
TRINITY_DN9880_c0_g1:170	si_a66	TRINITY_DN9880_c0_g1	159	179	170	-26.70	-20.58	0.770786516853933	6	1-11,179-169;15-21,165-159	12-14,168-166[SIL]	(((((((...(((((((((((&)))))))))))...)))))))	GGAAACAUUGUGAAAGAAGUG&CGCUUCUUUCAAAUUGUUUUU	4	0.914260420701434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a66_TRINITY_DN9880_c0_g1_170_TPlot.pdf
TRINITY_DN9884_c0_g1:552	si_s697	TRINITY_DN9884_c0_g1	541	561	552	-26.90	-19.90	0.739776951672862	6.5	1-10,561-552;12-20,550-542	11-11,551-551[SIL];21-21,541-541[UP3]	.(((((((((.((((((((((&)))))))))).))))))))).	CUACUGAUGAUUUGACUGAUU&AAUUAGUCGAUUUAUUAGUGA	2	0.376841049592959	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s697_TRINITY_DN9884_c0_g1_552_TPlot.pdf
TRINITY_DN9884_c0_g1:809	si_s440	TRINITY_DN9884_c0_g1	797	820	809	-21.60	-14.20	0.657407407407407	7.5	1-7,820-814;8-14,811-805;15-21,803-797	x-x,813-812[BULt];x-x,804-804[BULt]	(((((((.(((((((..(((((((&)))))))--)))))))-)))))))	UUGUUGUGAUAUGAUUGAUGUAGU&AUUACAU--AUUAUAU-AUAACAA	2	0.991493077225997	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN9884_c0_g1_809_TPlot.pdf
TRINITY_DN9886_c0_g1:1017	si_a401	TRINITY_DN9886_c0_g1	1004	1026	1017	-22.60	-14.80	0.654867256637168	9	1-11,1026-1016;12-17,1013-1008	x-x,1015-1014[BULt];18-21,1007-1004[UP3]	....((((((..(((((((((((&)))))))))))--))))))....	CAGCAAACAAAAGACAAUUCUAU&AUAGAAUUGUU--UUGUUUAUAU	4	0.99999999999827	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a401_TRINITY_DN9886_c0_g1_1017_TPlot.pdf
TRINITY_DN9886_c0_g1:1019	si_a399	TRINITY_DN9886_c0_g1	1006	1028	1019	-22.60	-14.80	0.654867256637168	7.5	3-13,1026-1016;14-19,1013-1008	1-2,1028-1027[UP5];x-x,1015-1014[BULt];20-21,1007-1006[UP3]	..((((((..(((((((((((..&..)))))))))))--))))))..	GCAAACAAAAGACAAUUCUAUUG&AUAUAGAAUUGUU--UUGUUUAU	3	0.999999999990932	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN9886_c0_g1_1019_TPlot.pdf
TRINITY_DN9886_c0_g1:1020	si_a398	TRINITY_DN9886_c0_g1	1007	1029	1020	-22.40	-14.80	0.660714285714286	8.5	4-14,1026-1016;15-20,1013-1008	1-3,1029-1027[UP5];x-x,1015-1014[BULt];21-21,1007-1007[UP3]	.((((((..(((((((((((...&...)))))))))))--)))))).	CAAACAAAAGACAAUUCUAUUGA&AAUAUAGAAUUGUU--UUGUUUA	0	0.402980939828728	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a398_TRINITY_DN9886_c0_g1_1020_TPlot.pdf
TRINITY_DN9886_c0_g1:3422	si_s803	TRINITY_DN9886_c0_g1	3410	3432	3422	-26.00	-18.70	0.719230769230769	8	2-6,3431-3427;7-11,3425-3421;12-21,3419-3410	1-1,3432-3432[UP5];x-x,3426-3426[BULt];x-x,3420-3420[BULt]	((((((((((.(((((.(((((.&.)))))-)))))-))))))))))	GAGAGGUAACAGGAGAUUAGAAG&AUUUUA-UCUUC-GUUACCUUUU	4	0.999940083048906	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s803_TRINITY_DN9886_c0_g1_3422_TPlot.pdf
TRINITY_DN9887_c0_g1:662	si_s184	TRINITY_DN9887_c0_g1	651	671	662	-33.40	-22.20	0.664670658682635	11	1-11,671-661	12-21,660-651[UP3]	..........(((((((((((&)))))))))))..........	AACCCCAGCAGUUACUCGGGC&GCCCGAGUAACGAUUAUUUUG	2	0.806580069096806	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN9887_c0_g1_662_TPlot.pdf
TRINITY_DN9887_c0_g1:663	si_s183	TRINITY_DN9887_c0_g1	652	672	663	-32.40	-22.30	0.688271604938272	10	2-12,671-661	1-1,672-672[UP5];13-21,660-652[UP3]	.........(((((((((((.&.))))))))))).........	ACCCCAGCAGUUACUCGGGCG&UGCCCGAGUAACGAUUAUUUU	2	0.729327486858325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN9887_c0_g1_663_TPlot.pdf
TRINITY_DN9887_c0_g3:797	si_s184	TRINITY_DN9887_c0_g3	786	806	797	-33.40	-22.20	0.664670658682635	11	1-11,806-796	12-21,795-786[UP3]	..........(((((((((((&)))))))))))..........	AACCCCAACAGUUACUCGGGC&GCCCGAGUAACGAUUAUUUUG	3	0.925070995148592	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s184_TRINITY_DN9887_c0_g3_797_TPlot.pdf
TRINITY_DN9887_c0_g3:798	si_s183	TRINITY_DN9887_c0_g3	787	807	798	-32.40	-22.30	0.688271604938272	10	2-12,806-796	1-1,807-807[UP5];13-21,795-787[UP3]	.........(((((((((((.&.))))))))))).........	ACCCCAACAGUUACUCGGGCG&UGCCCGAGUAACGAUUAUUUU	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s183_TRINITY_DN9887_c0_g3_798_TPlot.pdf
TRINITY_DN9888_c2_g1:98	si_a459	TRINITY_DN9888_c2_g1	87	110	98	-23.20	-15.20	0.655172413793103	11.5	1-4,110-107;6-8,105-103;9-20,99-88	5-5,106-106[SIL];x-x,102-100[BULt];21-21,87-87[UP3]	.((((((((((((...(((.((((&)))).)))---)))))))))))).	CUACAUGUUGUGUUUCAUAUCAAC&GUUGUUAU---AUAUAAUAUGUAA	3	0.999931971929919	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a459_TRINITY_DN9888_c2_g1_98_TPlot.pdf
TRINITY_DN9888_c2_g1:99	si_a458	TRINITY_DN9888_c2_g1	88	111	99	-23.80	-15.70	0.659663865546218	10	1-5,111-107;7-9,105-103;10-21,99-88	6-6,106-106[SIL];x-x,102-100[BULt]	((((((((((((...(((.(((((&))))).)))---))))))))))))	UACAUGUUGUGUUUCAUAUCAACA&UGUUGUUAU---AUAUAAUAUGUA	3	0.998974846334998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a458_TRINITY_DN9888_c2_g1_99_TPlot.pdf
TRINITY_DN9895_c0_g1:204	si_a406	TRINITY_DN9895_c0_g1	193	213	204	-19.80	-16.50	0.833333333333333	9.5	3-18,211-196	1-2,213-212[UP5];19-21,195-193[UP3]	...((((((((((((((((..&..))))))))))))))))...	AUGGAAUAUGGACGAAACAGA&AUUGUUUUGUUUAUAUUUAAA	4	0.808216610281626	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN9895_c0_g1_204_TPlot.pdf
TRINITY_DN989_c0_g1:1547	si_s82	TRINITY_DN989_c0_g1	1536	1556	1547	-28.90	-19.10	0.660899653979239	12	4-10,1553-1547;12-19,1545-1538	1-3,1556-1554[UP5];11-11,1546-1546[SIL];20-21,1537-1536[UP3]	..((((((((.(((((((...&...))))))).))))))))..	AUGAGGGAGACAGGAGGGCAA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN989_c0_g1_1547_TPlot.pdf
TRINITY_DN989_c0_g1:1631	si_s439	TRINITY_DN989_c0_g1	1621	1641	1631	-21.50	-14.60	0.67906976744186	4.5	1-7,1641-1635;8-18,1633-1623;20-21,1622-1621	x-x,1634-1634[BULt];19-19,x-x[BULq]	((-(((((((((((.(((((((&)))))))-))))))))))).))	UG-UAUGUAUGAUAUUGUAAUU&AAUUACA-UAUUAUAUAUAACA	3	0.99223808855206	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN989_c0_g1_1631_TPlot.pdf
TRINITY_DN989_c0_g1:282	si_a410	TRINITY_DN989_c0_g1	271	291	282	-17.80	-11.90	0.668539325842697	7	1-14,291-278	15-21,277-271[UP3]	.......((((((((((((((&)))))))))))))).......	CUAAACAAAAUAUAAACAAAA&UUUUGUUUAUAUUUAAAUAAA	2	0.9999999929398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a410_TRINITY_DN989_c0_g1_282_TPlot.pdf
TRINITY_DN989_c0_g1:283	si_a409	TRINITY_DN989_c0_g1	272	292	283	-19.50	-13.20	0.676923076923077	6.5	1-15,292-278	16-21,277-272[UP3]	......(((((((((((((((&)))))))))))))))......	UAAACAAAAUAUAAACAAAAU&GUUUUGUUUAUAUUUAAAUAA	2	0.99999861751138	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a409_TRINITY_DN989_c0_g1_283_TPlot.pdf
TRINITY_DN989_c0_g1:284	si_a408	TRINITY_DN989_c0_g1	273	293	284	-20.10	-13.50	0.671641791044776	7	2-16,292-278	1-1,293-293[UP5];17-21,277-273[UP3]	.....(((((((((((((((.&.))))))))))))))).....	AAACAAAAUAUAAACAAAAUG&UGUUUUGUUUAUAUUUAAAUA	4	0.999999999983242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a408_TRINITY_DN989_c0_g1_284_TPlot.pdf
TRINITY_DN989_c0_g1:285	si_a407	TRINITY_DN989_c0_g1	274	294	285	-19.80	-14.50	0.732323232323232	6	1-17,294-278	18-21,277-274[UP3]	....(((((((((((((((((&)))))))))))))))))....	AACAAAAUAUAAACAAAAUGA&UUGUUUUGUUUAUAUUUAAAU	3	0.999970336358266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a407_TRINITY_DN989_c0_g1_285_TPlot.pdf
TRINITY_DN989_c0_g1:286	si_a406	TRINITY_DN989_c0_g1	275	295	286	-19.80	-14.50	0.732323232323232	6	2-18,294-278	1-1,295-295[UP5];19-21,277-275[UP3]	...(((((((((((((((((.&.)))))))))))))))))...	ACAAAAUAUAAACAAAAUGAG&AUUGUUUUGUUUAUAUUUAAA	3	0.999998576180637	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a406_TRINITY_DN989_c0_g1_286_TPlot.pdf
TRINITY_DN989_c0_g1:288	si_a404	TRINITY_DN989_c0_g1	277	298	288	-21.70	-16.50	0.76036866359447	5	1-5,298-294;6-20,292-278	x-x,293-293[BULt];21-21,277-277[UP3]	.(((((((((((((((.(((((&)))))-))))))))))))))).	AAAAUAUAAACAAAAUGAGUUC&GAAUU-GUUUUGUUUAUAUUUA	4	0.988659693008039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a404_TRINITY_DN989_c0_g1_288_TPlot.pdf
TRINITY_DN989_c0_g1:289	si_a403	TRINITY_DN989_c0_g1	278	299	289	-22.00	-16.40	0.745454545454545	5	2-6,298-294;7-21,292-278	1-1,299-299[UP5];x-x,293-293[BULt]	(((((((((((((((.(((((.&.)))))-)))))))))))))))	AAAUAUAAACAAAAUGAGUUCC&AGAAUU-GUUUUGUUUAUAUUU	3	0.994822349389629	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a403_TRINITY_DN989_c0_g1_289_TPlot.pdf
TRINITY_DN989_c0_g1:290	si_a402	TRINITY_DN989_c0_g1	279	300	290	-22.40	-15.50	0.691964285714286	7	3-7,298-294;8-21,292-279	1-2,300-299[UP5];x-x,293-293[BULt]	((((((((((((((.(((((..&..)))))-))))))))))))))	AAUAUAAACAAAAUGAGUUCCA&UAGAAUU-GUUUUGUUUAUAUU	3	0.999998071001669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a402_TRINITY_DN989_c0_g1_290_TPlot.pdf
TRINITY_DN989_c0_g1:308	si_s67	TRINITY_DN989_c0_g1	297	319	308	-25.60	-16.90	0.66015625	7.5	1-8,319-312;9-18,309-300	x-x,311-310[BULt];19-21,299-297[UP3]	...((((((((((..((((((((&))))))))--))))))))))...	UCCAAAGAAAAUAACGAAGUUGC&GCAACUUC--UAUUUUUUUUCUU	2	0.999999978625884	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN989_c0_g1_308_TPlot.pdf
TRINITY_DN989_c0_g1:312	si_s65	TRINITY_DN989_c0_g1	299	321	312	-26.00	-17.00	0.653846153846154	8.5	3-10,319-312;11-20,309-300	1-2,321-320[UP5];x-x,311-310[BULt];21-21,299-299[UP3]	.((((((((((..((((((((..&..))))))))--)))))))))).	CAAAGAAAAUAACGAAGUUGCAG&UAGCAACUUC--UAUUUUUUUUC	2	0.999988530050541	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN989_c0_g1_312_TPlot.pdf
TRINITY_DN989_c0_g1:455	si_a497	TRINITY_DN989_c0_g1	444	466	455	-32.00	-22.40	0.7	12	3-5,464-462;6-19,459-446	1-2,466-465[UP5];x-x,461-460[BULt];20-21,445-444[UP3]	..((((((((((((((..(((..&..)))--))))))))))))))..	UCGGAGGGCGAAGAAUUAGACGA&AUGUC--GUUUUUCGUCUUCCUU	2	0.999958666064121	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN989_c0_g1_455_TPlot.pdf
TRINITY_DN989_c0_g1:456	si_a496	TRINITY_DN989_c0_g1	445	467	456	-32.40	-22.40	0.691358024691358	13	4-6,464-462;7-20,459-446	1-3,467-465[UP5];x-x,461-460[BULt];21-21,445-445[UP3]	.((((((((((((((..(((...&...)))--)))))))))))))).	CGGAGGGCGAAGAAUUAGACGAG&UAUGUC--GUUUUUCGUCUUCCU	2	0.999665500007058	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN989_c0_g1_456_TPlot.pdf
TRINITY_DN989_c0_g1:457	si_a495	TRINITY_DN989_c0_g1	446	468	457	-31.90	-22.10	0.692789968652038	14	5-7,464-462;8-21,459-446	1-4,468-465[UP5];x-x,461-460[BULt]	((((((((((((((..(((....&....)))--))))))))))))))	GGAGGGCGAAGAAUUAGACGAGG&AUAUGUC--GUUUUUCGUCUUCC	3	0.99996911070036	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN989_c0_g1_457_TPlot.pdf
TRINITY_DN989_c0_g1:466	si_s87	TRINITY_DN989_c0_g1	449	476	466	-32.90	-22.70	0.689969604863222	17	1-6,476-471;7-11,469-465;12-21,458-449	x-x,470-470[BULt];x-x,464-459[BULt]	((((((((((......(((((.((((((&))))))-)))))------))))))))))	GGGCGAAGAAUUAGACGAGGAGGAGGAA&UUCCUU-UCUUC------UUCUUCGCUU	4	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN989_c0_g1_466_TPlot.pdf
TRINITY_DN989_c0_g1:470	si_a503	TRINITY_DN989_c0_g1	459	479	470	-32.10	-20.90	0.651090342679128	9.5	1-6,479-474;8-16,472-464	7-7,473-473[SIL];17-21,463-459[UP3]	.....(((((((((.((((((&)))))).))))))))).....	UUAGACGAGGAGGAGGAAGAA&UUUUUCGUCUUCCUUGGAAUG	3	0.999999999922477	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a503_TRINITY_DN989_c0_g1_470_TPlot.pdf
TRINITY_DN989_c0_g1:472	si_a501	TRINITY_DN989_c0_g1	461	481	472	-33.50	-22.50	0.671641791044776	9.5	1-1,481-481;3-8,479-474;10-18,472-464	2-2,480-480[SIL];9-9,473-473[SIL];19-21,463-461[UP3]	...(((((((((.((((((.(&).)))))).)))))))))...	AGACGAGGAGGAGGAAGAAGG&CGUUUUUCGUCUUCCUUGGAA	3	0.999999996220291	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a501_TRINITY_DN989_c0_g1_472_TPlot.pdf
TRINITY_DN989_c0_g1:473	si_a500	TRINITY_DN989_c0_g1	462	482	473	-34.40	-22.50	0.654069767441861	9	2-2,481-481;4-9,479-474;11-19,472-464	1-1,482-482[UP5];3-3,480-480[SIL];10-10,473-473[SIL];20-21,463-462[UP3]	..(((((((((.((((((.(.&.).)))))).)))))))))..	GACGAGGAGGAGGAAGAAGGC&UCGUUUUUCGUCUUCCUUGGA	4	0.999999999987704	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a500_TRINITY_DN989_c0_g1_473_TPlot.pdf
TRINITY_DN989_c0_g1:474	si_a499	TRINITY_DN989_c0_g1	463	482	474	-35.20	-23.90	0.678977272727273	8	1-3,482-480;5-10,479-474;12-20,472-464	4-4,x-x[BULq];11-11,473-473[SIL];21-21,463-463[UP3]	.(((((((((.((((((-(((&))).)))))).))))))))).	ACGAGGAGGAGGAAGAA-GGC&GUCGUUUUUCGUCUUCCUUGG	3	0.999999971955594	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a499_TRINITY_DN989_c0_g1_474_TPlot.pdf
TRINITY_DN989_c0_g1:475	si_a498	TRINITY_DN989_c0_g1	464	483	475	-33.50	-23.60	0.704477611940299	8	2-4,482-480;6-11,479-474;13-21,472-464	1-1,483-483[UP5];5-5,x-x[BULq];12-12,473-473[SIL]	(((((((((.((((((-(((.&.))).)))))).)))))))))	CGAGGAGGAGGAAGAA-GGCU&UGUCGUUUUUCGUCUUCCUUG	3	0.999966505364952	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN989_c0_g1_475_TPlot.pdf
TRINITY_DN989_c0_g1:476	si_s89	TRINITY_DN989_c0_g1	464	489	476	-35.30	-24.30	0.688385269121813	13	1-4,489-486;5-15,481-471;17-21,468-464	x-x,485-482[BULt];16-16,470-469[AILt]	(((((..(((((((((((....((((&))))----)))))))))))-.)))))	CGAGGAGGAGGAAGAAGGCUUAGAGG&CCUU----UCUUCUUCUUC-GCUUCG	4	0.999999999099562	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN989_c0_g1_476_TPlot.pdf
TRINITY_DN989_c0_g1:477	si_s88	TRINITY_DN989_c0_g1	467	490	477	-34.80	-23.50	0.675287356321839	12	1-5,490-486;6-16,481-471;18-21,470-467	x-x,485-482[BULt];17-17,x-x[BULq]	((((-(((((((((((....(((((&)))))----))))))))))).))))	GGAG-GAGGAAGAAGGCUUAGAGGA&UCCUU----UCUUCUUCUUCGCUUC	3	0.999999999998981	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s88_TRINITY_DN989_c0_g1_477_TPlot.pdf
TRINITY_DN989_c0_g1:478	si_s84	TRINITY_DN989_c0_g1	467	493	478	-32.30	-23.20	0.718266253869969	16	1-6,493-488;7-20,481-468	x-x,487-482[BULt];21-21,467-467[UP3]	.((((((((((((((......((((((&))))))------)))))))))))))).	GGAGGAGGAAGAAGGCUUAGAGGAAGA&UCUUUC------CUUUCUUCUUCUUCG	3	0.999999960435398	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN989_c0_g1_478_TPlot.pdf
TRINITY_DN989_c0_g1:479	si_s83	TRINITY_DN989_c0_g1	468	494	479	-30.90	-23.00	0.744336569579288	15.5	1-7,494-488;8-21,481-468	x-x,487-482[BULt]	((((((((((((((......(((((((&)))))))------))))))))))))))	GAGGAGGAAGAAGGCUUAGAGGAAGAG&UUCUUUC------CUUUCUUCUUCUUC	2	0.999890876151333	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s83_TRINITY_DN989_c0_g1_479_TPlot.pdf
TRINITY_DN989_c0_g1:480	si_s82	TRINITY_DN989_c0_g1	469	495	480	-28.90	-20.20	0.698961937716263	17	2-8,494-488;9-21,481-469	1-1,495-495[UP5];x-x,487-482[BULt]	(((((((((((((......(((((((.&.)))))))------)))))))))))))	AGGAGGAAGAAGGCUUAGAGGAAGAGG&UUUCUUUC------CUUUCUUCUUCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN989_c0_g1_480_TPlot.pdf
TRINITY_DN989_c0_g1:481	si_s81	TRINITY_DN989_c0_g1	470	496	481	-28.90	-21.00	0.726643598615917	17	1-9,496-488;10-21,481-470	x-x,487-482[BULt]	((((((((((((......(((((((((&)))))))))------))))))))))))	GGAGGAAGAAGGCUUAGAGGAAGAGGA&UUUUCUUUC------CUUUCUUCUUCU	3	0.99999999999971	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN989_c0_g1_481_TPlot.pdf
TRINITY_DN989_c0_g1:488	si_s80	TRINITY_DN989_c0_g1	471	497	488	-28.20	-20.80	0.73758865248227	16.5	1-10,497-488;11-21,481-471	x-x,487-482[BULt]	(((((((((((......((((((((((&))))))))))------)))))))))))	GAGGAAGAAGGCUUAGAGGAAGAGGAA&UUUUUCUUUC------CUUUCUUCUUC	3	0.999999999995535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s80_TRINITY_DN989_c0_g1_488_TPlot.pdf
TRINITY_DN989_c0_g1:490	si_s78	TRINITY_DN989_c0_g1	473	499	490	-26.20	-18.50	0.706106870229008	17	1-12,499-488;13-21,481-473	x-x,487-482[BULt]	(((((((((......((((((((((((&))))))))))))------)))))))))	GGAAGAAGGCUUAGAGGAAGAGGAAGA&UUUUUUUCUUUC------CUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN989_c0_g1_490_TPlot.pdf
TRINITY_DN989_c0_g1:491	si_s77	TRINITY_DN989_c0_g1	474	500	491	-25.50	-17.60	0.690196078431373	11.5	2-13,499-488;14-21,481-474	1-1,500-500[UP5];x-x,487-482[BULt]	((((((((......((((((((((((.&.))))))))))))------))))))))	GAAGAAGGCUUAGAGGAAGAGGAAGAU&UUUUUUUUCUUUC------CUUUCUUC	2	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s77_TRINITY_DN989_c0_g1_491_TPlot.pdf
TRINITY_DN989_c0_g1:497	si_s797	TRINITY_DN989_c0_g1	485	506	497	-30.00	-20.20	0.673333333333333	9	1-11,506-496;13-17,493-489;19-20,487-486	12-12,495-494[AILt];18-18,488-488[SIL];21-21,485-485[UP3]	.((.(((((..(((((((((((&)))))))))))-.))))).)).	AGAGGAAGAGGAAGAUACGGGU&GCUCGUAUUUU-AUCUUCGUUA	4	0.9999969963825	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN989_c0_g1_497_TPlot.pdf
TRINITY_DN989_c0_g1:514	si_a71	TRINITY_DN989_c0_g1	503	526	514	-23.30	-15.20	0.652360515021459	11.5	1-6,526-521;7-10,517-514;12-20,512-504	x-x,520-518[BULt];11-11,513-513[SIL];21-21,503-503[UP3]	.(((((((((.((((...((((((&))))))---)))).))))))))).	GGGUGAAGAAGAAUUACAUGAAGG&CUUUCA---AAUUGUUUUUCAUUA	3	0.999999999999974	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN989_c0_g1_514_TPlot.pdf
TRINITY_DN989_c0_g1:515	si_a70	TRINITY_DN989_c0_g1	504	527	515	-23.90	-16.40	0.686192468619247	10.5	1-7,527-521;8-11,517-514;13-21,512-504	x-x,520-518[BULt];12-12,513-513[SIL]	(((((((((.((((...(((((((&)))))))---)))).)))))))))	GGUGAAGAAGAAUUACAUGAAGGA&UCUUUCA---AAUUGUUUUUCAUU	4	0.999999929848069	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a70_TRINITY_DN989_c0_g1_515_TPlot.pdf
TRINITY_DN989_c0_g1:516	si_a69	TRINITY_DN989_c0_g1	505	528	516	-24.00	-16.10	0.670833333333333	10	2-8,527-521;9-12,517-514;14-21,512-505	1-1,528-528[UP5];x-x,520-518[BULt];13-13,513-513[SIL]	((((((((.((((...(((((((.&.)))))))---)))).))))))))	GUGAAGAAGAAUUACAUGAAGGAG&UUCUUUCA---AAUUGUUUUUCAU	3	0.999999999803277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a69_TRINITY_DN989_c0_g1_516_TPlot.pdf
TRINITY_DN989_c0_g1:535	si_s73	TRINITY_DN989_c0_g1	522	544	535	-24.00	-18.40	0.766666666666667	6	1-11,544-534;12-13,532-531;14-21,529-522	x-x,533-533[BULt];x-x,530-530[BULt]	((((((((.((.(((((((((((&)))))))))))-))-))))))))	GAAGGAGACGAUGAAGAAAUAGA&UCUAUUUUUUU-UC-UUUCCUUU	3	0.999998860419194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN989_c0_g1_535_TPlot.pdf
TRINITY_DN989_c0_g1:536	si_s72	TRINITY_DN989_c0_g1	523	545	536	-24.10	-18.20	0.755186721991701	5.5	1-12,545-534;13-14,532-531;15-21,529-523	x-x,533-533[BULt];x-x,530-530[BULt]	(((((((.((.((((((((((((&))))))))))))-))-)))))))	AAGGAGACGAUGAAGAAAUAGAA&UUCUAUUUUUUU-UC-UUUCCUU	4	0.999999964502386	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN989_c0_g1_536_TPlot.pdf
TRINITY_DN989_c0_g1:539	si_a549	TRINITY_DN989_c0_g1	525	548	539	-29.50	-19.60	0.664406779661017	10.5	5-16,544-533;17-21,529-525	1-4,548-545[UP5];x-x,532-530[BULt]	(((((...((((((((((((....&....))))))))))))---)))))	GGAGACGAUGAAGAAAUAGAAGGC&UCAAUCUAUUUCUUUA---UCUCC	3	0.999054586542315	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a549_TRINITY_DN989_c0_g1_539_TPlot.pdf
TRINITY_DN989_c0_g1:540	si_a548	TRINITY_DN989_c0_g1	528	549	540	-27.20	-17.80	0.654411764705882	10.5	6-19,544-531;20-21,529-528	1-5,549-545[UP5];x-x,530-530[BULt]	((.((((((((((((((.....&.....))))))))))))))-))	GACGAUGAAGAAAUAGAAGGCG&UUCAAUCUAUUUCUUUAUC-UC	2	0.998291993200065	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a548_TRINITY_DN989_c0_g1_540_TPlot.pdf
TRINITY_DN989_c0_g1:541	si_a547	TRINITY_DN989_c0_g1	530	550	541	-26.90	-17.50	0.650557620817844	12.5	7-20,544-531	1-6,550-545[UP5];21-21,530-530[UP3]	.((((((((((((((......&......)))))))))))))).	CGAUGAAGAAAUAGAAGGCGA&GUUCAAUCUAUUUCUUUAUCU	2	0.999722465673128	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a547_TRINITY_DN989_c0_g1_541_TPlot.pdf
TRINITY_DN989_c0_g1:557	si_s808	TRINITY_DN989_c0_g1	545	566	557	-28.60	-20.60	0.72027972027972	8.5	1-10,566-557;11-17,555-549	x-x,556-556[BULt];18-21,548-545[UP3]	....(((((((.((((((((((&))))))))))-)))))))....	AGGCGAAGAGGAUGAUGAAGAU&AUCUUCGUUA-CCUUUUCUUAA	2	0.984149711252624	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN989_c0_g1_557_TPlot.pdf
TRINITY_DN989_c0_g1:558	si_s807	TRINITY_DN989_c0_g1	546	567	558	-28.90	-21.40	0.740484429065744	8	1-11,567-557;12-18,555-549	x-x,556-556[BULt];19-21,548-546[UP3]	...(((((((.(((((((((((&)))))))))))-)))))))...	GGCGAAGAGGAUGAUGAAGAUG&UAUCUUCGUUA-CCUUUUCUUA	3	0.9753905945577	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s807_TRINITY_DN989_c0_g1_558_TPlot.pdf
TRINITY_DN989_c0_g1:559	si_s806	TRINITY_DN989_c0_g1	547	568	559	-28.60	-21.40	0.748251748251748	8.5	2-12,567-557;13-19,555-549	1-1,568-568[UP5];x-x,556-556[BULt];20-21,548-547[UP3]	..(((((((.(((((((((((.&.)))))))))))-)))))))..	GCGAAGAGGAUGAUGAAGAUGU&UUAUCUUCGUUA-CCUUUUCUU	4	0.981000316041263	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s806_TRINITY_DN989_c0_g1_559_TPlot.pdf
TRINITY_DN989_c0_g1:560	si_s805	TRINITY_DN989_c0_g1	548	569	560	-28.60	-21.40	0.748251748251748	8.5	3-13,567-557;14-20,555-549	1-2,569-568[UP5];x-x,556-556[BULt];21-21,548-548[UP3]	.(((((((.(((((((((((..&..)))))))))))-))))))).	CGAAGAGGAUGAUGAAGAUGUA&UUUAUCUUCGUUA-CCUUUUCU	3	0.962353131109481	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s805_TRINITY_DN989_c0_g1_560_TPlot.pdf
TRINITY_DN989_c0_g1:579	si_s71	TRINITY_DN989_c0_g1	568	591	579	-25.70	-17.70	0.688715953307393	12	1-7,591-585;8-19,581-570	x-x,584-582[BULt];20-21,569-568[UP3]	..((((((((((((...(((((((&)))))))---))))))))))))..	UAGAAGGAGAAGAGGGUGUAGAAG&CUUCUAU---UUUUUUUCUUUCCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN989_c0_g1_579_TPlot.pdf
TRINITY_DN989_c0_g1:580	si_s70	TRINITY_DN989_c0_g1	569	592	580	-25.80	-17.70	0.686046511627907	12	2-8,591-585;9-20,581-570	1-1,592-592[UP5];x-x,584-582[BULt];21-21,569-569[UP3]	.((((((((((((...(((((((.&.)))))))---)))))))))))).	AGAAGGAGAAGAGGGUGUAGAAGA&ACUUCUAU---UUUUUUUCUUUCC	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN989_c0_g1_580_TPlot.pdf
TRINITY_DN989_c0_g1:581	si_s69	TRINITY_DN989_c0_g1	570	593	581	-23.40	-17.70	0.756410256410256	13	3-9,591-585;10-21,581-570	1-2,593-592[UP5];x-x,584-582[BULt]	((((((((((((...(((((((..&..)))))))---))))))))))))	GAAGGAGAAGAGGGUGUAGAAGAA&AACUUCUAU---UUUUUUUCUUUC	3	0.999999688060689	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s69_TRINITY_DN989_c0_g1_581_TPlot.pdf
TRINITY_DN989_c0_g1:582	si_s82	TRINITY_DN989_c0_g1	571	594	582	-28.90	-19.30	0.667820069204152	10.5	2-7,593-588;8-8,585-585;9-21,583-571	1-1,594-594[UP5];x-x,587-586[BULt];x-x,584-584[BULt]	(((((((((((((.(..((((((.&.))))))--)-)))))))))))))	AAGGAGAAGAGGGUGUAGAAGAAG&UUUCUUU--C-CUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN989_c0_g1_582_TPlot.pdf
TRINITY_DN989_c0_g1:583	si_s81	TRINITY_DN989_c0_g1	572	595	583	-28.90	-19.90	0.688581314878893	10.5	1-8,595-588;9-9,585-585;10-21,583-572	x-x,587-586[BULt];x-x,584-584[BULt]	((((((((((((.(..((((((((&))))))))--)-))))))))))))	AGGAGAAGAGGGUGUAGAAGAAGA&UUUUCUUU--C-CUUUCUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN989_c0_g1_583_TPlot.pdf
TRINITY_DN989_c0_g1:604	si_a494	TRINITY_DN989_c0_g1	591	613	604	-29.50	-19.60	0.664406779661017	13	6-13,608-601;14-21,598-591	1-5,613-609[UP5];x-x,600-599[BULt]	((((((((..((((((((.....&.....))))))))--))))))))	GAAGACGAUGAAGAUGACGAAGU&AAUAUGUCGUUUU--UCGUCUUC	2	0.999999912765887	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a494_TRINITY_DN989_c0_g1_604_TPlot.pdf
TRINITY_DN989_c0_g1:725	si_s758	TRINITY_DN989_c0_g1	714	734	725	-23.50	-15.40	0.65531914893617	14	8-21,727-714	1-7,734-728[UP5]	((((((((((((((.......&.......))))))))))))))	AGUUAGUCGUUGUUCAGUGCG&UUAAAACAACAACGAUUAAUU	4	0.953843223639275	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s758_TRINITY_DN989_c0_g1_725_TPlot.pdf
TRINITY_DN989_c0_g1:795	si_a316	TRINITY_DN989_c0_g1	784	804	795	-26.30	-17.28	0.657034220532319	8	1-2,804-803;6-15,799-790;18-21,787-784	3-5,802-800[SIL];16-17,789-788[SIL]	((((..((((((((((...((&))...))))))))))..))))	AAAAUCAUCAUGGAUAUCGCC&GGAUUUAUCCAUGAUUUUUUU	4	0.99999999585186	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a316_TRINITY_DN989_c0_g1_795_TPlot.pdf
TRINITY_DN98_c0_g1:1187	si_a498	TRINITY_DN98_c0_g1	1176	1196	1187	-33.50	-22.70	0.677611940298507	9	1-9,1196-1188;12-19,1185-1178	10-11,1187-1186[SIL];20-21,1177-1176[UP3]	..((((((((..(((((((((&)))))))))..))))))))..	AUGGGAGGACUCAGGACGACA&UGUCGUUUUUCGUCUUCCUUG	3	0.999999996785422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a498_TRINITY_DN98_c0_g1_1187_TPlot.pdf
TRINITY_DN98_c0_g1:1188	si_a497	TRINITY_DN98_c0_g1	1177	1197	1188	-32.00	-22.70	0.709375	9	2-10,1196-1188;13-20,1185-1178	1-1,1197-1197[UP5];11-12,1187-1186[SIL];21-21,1177-1177[UP3]	.((((((((..(((((((((.&.)))))))))..)))))))).	UGGGAGGACUCAGGACGACAC&AUGUCGUUUUUCGUCUUCCUU	2	0.999543407832817	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a497_TRINITY_DN98_c0_g1_1188_TPlot.pdf
TRINITY_DN98_c0_g1:1189	si_a496	TRINITY_DN98_c0_g1	1178	1198	1189	-32.40	-22.70	0.700617283950617	9	3-11,1196-1188;14-21,1185-1178	1-2,1198-1197[UP5];12-13,1187-1186[SIL]	((((((((..(((((((((..&..)))))))))..))))))))	GGGAGGACUCAGGACGACACC&UAUGUCGUUUUUCGUCUUCCU	4	0.999977290835157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a496_TRINITY_DN98_c0_g1_1189_TPlot.pdf
TRINITY_DN98_c0_g1:1190	si_a495	TRINITY_DN98_c0_g1	1179	1199	1190	-31.90	-21.60	0.677115987460815	9.5	4-12,1196-1188;15-21,1185-1179	1-3,1199-1197[UP5];13-14,1187-1186[SIL]	(((((((..(((((((((...&...)))))))))..)))))))	GGAGGACUCAGGACGACACCC&AUAUGUCGUUUUUCGUCUUCC	3	0.999999869376044	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a495_TRINITY_DN98_c0_g1_1190_TPlot.pdf
TRINITY_DN98_c0_g1:1320	si_s628	TRINITY_DN98_c0_g1	1308	1332	1320	-35.40	-23.14	0.653672316384181	15	1-8,1332-1325;10-11,1320-1319;12-20,1317-1309	9-9,1324-1321[AILt];x-x,1318-1318[BULt];21-21,1308-1308[UP3]	.(((((((((.((....((((((((&))))))))---.))-))))))))).	CGGCGCCUGCAGACCACGAGGUCGU&GCGAUCUU---UUC-GUAGGCGUUU	4	0.999999469608976	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN98_c0_g1_1320_TPlot.pdf
TRINITY_DN98_c0_g1:1325	si_s626	TRINITY_DN98_c0_g1	1310	1334	1325	-36.10	-23.94	0.663157894736842	14	2-10,1333-1325;12-13,1320-1319;14-21,1317-1310	1-1,1334-1334[UP5];11-11,1324-1321[AILt];x-x,1318-1318[BULt]	((((((((.((....(((((((((.&.)))))))))---.))-))))))))	GCGCCUGCAGACCACGAGGUCGUUG&AAGCGAUCUU---UUC-GUAGGCGU	4	0.999104745094926	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN98_c0_g1_1325_TPlot.pdf
TRINITY_DN98_c0_g1:1526	si_a222	TRINITY_DN98_c0_g1	1515	1535	1526	-25.20	-16.60	0.658730158730159	14.5	5-16,1531-1520	1-4,1535-1532[UP5];17-21,1519-1515[UP3]	.....((((((((((((....&....)))))))))))).....	UCUGAGGAAGCAUGGGUGAAC&UUAAACUCAUGUUUCUAUAAU	4	0.998876533316265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a222_TRINITY_DN98_c0_g1_1526_TPlot.pdf
TRINITY_DN98_c0_g1:1943	si_s629	TRINITY_DN98_c0_g1	1932	1956	1943	-34.60	-24.18	0.698843930635838	16.5	1-7,1956-1950;9-19,1944-1934	8-8,1949-1945[AILt];20-21,1933-1932[UP3]	..(((((((((((.....(((((((&)))))))----.)))))))))))..	UCGACGCCUGCGGCCUUCGAGGUCG&CGAUCUU----UUCGUAGGCGUUUG	4	0.966826013186801	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s629_TRINITY_DN98_c0_g1_1943_TPlot.pdf
TRINITY_DN98_c0_g1:1944	si_s628	TRINITY_DN98_c0_g1	1933	1957	1944	-35.40	-25.98	0.733898305084746	15.5	1-8,1957-1950;10-20,1944-1934	9-9,1949-1945[AILt];21-21,1933-1933[UP3]	.(((((((((((.....((((((((&))))))))----.))))))))))).	CGACGCCUGCGGCCUUCGAGGUCGU&GCGAUCUU----UUCGUAGGCGUUU	3	0.834982480904266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s628_TRINITY_DN98_c0_g1_1944_TPlot.pdf
TRINITY_DN98_c0_g1:1945	si_s627	TRINITY_DN98_c0_g1	1934	1958	1945	-36.10	-26.88	0.744598337950138	15	1-9,1958-1950;11-21,1944-1934	10-10,1949-1945[AILt]	(((((((((((.....(((((((((&)))))))))----.)))))))))))	GACGCCUGCGGCCUUCGAGGUCGUU&AGCGAUCUU----UUCGUAGGCGUU	3	0.650999099007771	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s627_TRINITY_DN98_c0_g1_1945_TPlot.pdf
TRINITY_DN98_c0_g1:1950	si_s626	TRINITY_DN98_c0_g1	1935	1959	1950	-36.10	-25.98	0.719667590027701	15.5	2-10,1958-1950;12-21,1944-1935	1-1,1959-1959[UP5];11-11,1949-1945[AILt]	((((((((((.....(((((((((.&.)))))))))----.))))))))))	ACGCCUGCGGCCUUCGAGGUCGUUG&AAGCGAUCUU----UUCGUAGGCGU	3	0.813670835553006	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s626_TRINITY_DN98_c0_g1_1950_TPlot.pdf
TRINITY_DN98_c0_g1:2115	si_a556	TRINITY_DN98_c0_g1	2103	2124	2115	-33.40	-22.40	0.67065868263473	8	2-9,2123-2116;12-18,2113-2107;19-21,2105-2103	1-1,2124-2124[UP5];10-11,2115-2114[SIL];x-x,2106-2106[BULt]	(((.(((((((..((((((((.&.))))))))..)))))))-)))	UUCAACGGGGAAUUAGAGAAGC&AUUUCUUUAUCUCCCCGU-GAA	4	0.998193857390993	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a556_TRINITY_DN98_c0_g1_2115_TPlot.pdf
TRINITY_DN98_c0_g1:2217	si_s798	TRINITY_DN98_c0_g1	2206	2226	2217	-29.30	-19.40	0.662116040955631	5.5	1-14,2226-2213;16-16,2211-2211;18-20,2209-2207	15-15,2212-2212[SIL];17-17,2210-2210[SIL];21-21,2206-2206[UP3]	.(((.(.((((((((((((((&)))))))))))))).).))).	UUGGAGUGGAUGAAAUACGAG&CUCGUAUUUUAUCUUCGUUAC	3	0.999887154802956	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s798_TRINITY_DN98_c0_g1_2217_TPlot.pdf
TRINITY_DN98_c0_g1:2218	si_s797	TRINITY_DN98_c0_g1	2207	2227	2218	-30.00	-19.60	0.653333333333333	5.5	2-15,2226-2213;17-17,2211-2211;19-21,2209-2207	1-1,2227-2227[UP5];16-16,2212-2212[SIL];18-18,2210-2210[SIL]	(((.(.((((((((((((((.&.)))))))))))))).).)))	UGGAGUGGAUGAAAUACGAGA&GCUCGUAUUUUAUCUUCGUUA	3	0.999999997478712	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s797_TRINITY_DN98_c0_g1_2218_TPlot.pdf
TRINITY_DN98_c0_g1:2389	si_s84	TRINITY_DN98_c0_g1	2372	2398	2389	-32.30	-21.20	0.656346749226006	19.5	5-12,2394-2387;13-21,2380-2372	1-4,2398-2395[UP5];x-x,2386-2381[BULt]	(((((((((......((((((((....&....))))))))------)))))))))	CGAGGAAGAUAAAAUAGAAAGGACAUG&UCUUUCCUUUCU------UCUUCUUCG	2	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN98_c0_g1_2389_TPlot.pdf
TRINITY_DN98_c0_g1:432	si_a399	TRINITY_DN98_c0_g1	421	444	432	-22.60	-15.20	0.672566371681416	13.5	1-5,444-440;6-10,436-432;12-21,430-421	x-x,439-437[BULt];11-11,431-431[SIL]	((((((((((.(((((...(((((&)))))---))))).))))))))))	GUGAGCAGGAGGAUUCCCGUGUGU&AUAUA---GAAUUGUUUUGUUUAU	4	0.999999946359056	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a399_TRINITY_DN98_c0_g1_432_TPlot.pdf
TRINITY_DN9903_c0_g1:127	si_s363	TRINITY_DN9903_c0_g1	116	136	127	-36.20	-26.90	0.743093922651934	10.5	4-7,133-130;10-21,127-116	1-3,136-134[UP5];8-9,129-128[SIL]	((((((((((((..((((...&...))))..))))))))))))	CGAGUGAUCGGUCAGAUCAUA&AUAGAUUGAACCGAUCGCUCG	4	0.116491312462813	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s363_TRINITY_DN9903_c0_g1_127_TPlot.pdf
TRINITY_DN9904_c0_g1:216	si_a143	TRINITY_DN9904_c0_g1	205	225	216	-25.10	-16.90	0.673306772908366	11.5	5-17,221-209	1-4,225-222[UP5];18-21,208-205[UP3]	....(((((((((((((....&....)))))))))))))....	ACGUAGACAACAACGAUGUUC&AUUAAUCGUUGUUGUUUUAAG	4	0.99998152635743	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a143_TRINITY_DN9904_c0_g1_216_TPlot.pdf
TRINITY_DN9904_c0_g1:217	si_a142	TRINITY_DN9904_c0_g1	206	226	217	-23.50	-16.90	0.719148936170213	12.5	6-18,221-209	1-5,226-222[UP5];19-21,208-206[UP3]	...(((((((((((((.....&.....)))))))))))))...	CGUAGACAACAACGAUGUUCA&AAUUAAUCGUUGUUGUUUUAA	3	0.999792872867039	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a142_TRINITY_DN9904_c0_g1_217_TPlot.pdf
TRINITY_DN9904_c0_g1:218	si_a141	TRINITY_DN9904_c0_g1	207	227	218	-23.80	-16.90	0.710084033613445	13.5	7-19,221-209	1-6,227-222[UP5];20-21,208-207[UP3]	..(((((((((((((......&......)))))))))))))..	GUAGACAACAACGAUGUUCAA&UAAUUAAUCGUUGUUGUUUUA	3	0.999756459400394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a141_TRINITY_DN9904_c0_g1_218_TPlot.pdf
TRINITY_DN9904_c0_g1:219	si_a140	TRINITY_DN9904_c0_g1	208	228	219	-25.20	-16.90	0.670634920634921	14.5	8-20,221-209	1-7,228-222[UP5];21-21,208-208[UP3]	.(((((((((((((.......&.......))))))))))))).	UAGACAACAACGAUGUUCAAA&GUAAUUAAUCGUUGUUGUUUU	4	0.999998169844787	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a140_TRINITY_DN9904_c0_g1_219_TPlot.pdf
TRINITY_DN9904_c0_g1:220	si_a139	TRINITY_DN9904_c0_g1	209	229	220	-25.90	-16.90	0.652509652509653	15.5	9-21,221-209	1-8,229-222[UP5]	(((((((((((((........&........)))))))))))))	AGACAACAACGAUGUUCAAAG&AGUAAUUAAUCGUUGUUGUUU	3	0.999994798484317	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a139_TRINITY_DN9904_c0_g1_220_TPlot.pdf
TRINITY_DN9904_c1_g1:189	si_a113	TRINITY_DN9904_c1_g1	178	198	189	-26.20	-17.90	0.683206106870229	12	5-18,194-181	1-4,198-195[UP5];19-21,180-178[UP3]	...((((((((((((((....&....))))))))))))))...	GUAAGGACAAGCUUGUACAAG&AAAAUACGAGCUUGUUUUAUA	3	0.99909209964531	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN9904_c1_g1_189_TPlot.pdf
TRINITY_DN9907_c0_g1:262	si_s796	TRINITY_DN9907_c0_g1	248	271	262	-30.30	-20.20	0.666666666666667	8.5	1-6,271-266;8-16,264-256;17-21,252-248	7-7,265-265[SIL];x-x,255-253[BULt]	(((((...(((((((((.((((((&)))))).)))))))))---)))))	GAUGAUUUGGAUGAAGUCCGAGCU&AGCUCGUAUUUUAUCU---UCGUU	2	0.99927635706567	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s796_TRINITY_DN9907_c0_g1_262_TPlot.pdf
TRINITY_DN9915_c0_g1:1083	si_a116	TRINITY_DN9915_c0_g1	1073	1092	1083	-31.10	-20.72	0.666237942122186	9.5	2-11,1091-1082;16-20,1078-1074	1-1,1092-1092[UP5];12-15,1081-1079[AILq];21-21,1073-1073[UP3]	.(((((...-((((((((((.&.))))))))))....))))).	CGCUGUUGC-CGAGCUCGUGG&AUACGAGCUUGUUUUAUAGCA	2	0.95546755294484	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a116_TRINITY_DN9915_c0_g1_1083_TPlot.pdf
TRINITY_DN9915_c0_g1:3570	si_a113	TRINITY_DN9915_c0_g1	3559	3579	3570	-26.20	-17.90	0.683206106870229	14	5-18,3575-3562	1-4,3579-3576[UP5];19-21,3561-3559[UP3]	...((((((((((((((....&....))))))))))))))...	AUCGAGACAGGCUUGUGGGUC&AAAAUACGAGCUUGUUUUAUA	4	0.999407553065325	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a113_TRINITY_DN9915_c0_g1_3570_TPlot.pdf
TRINITY_DN9915_c0_g1:3571	si_a112	TRINITY_DN9915_c0_g1	3560	3580	3571	-26.20	-17.90	0.683206106870229	14.5	6-19,3575-3562	1-5,3580-3576[UP5];20-21,3561-3560[UP3]	..((((((((((((((.....&.....))))))))))))))..	UCGAGACAGGCUUGUGGGUCG&UAAAAUACGAGCUUGUUUUAU	4	0.998266905224669	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a112_TRINITY_DN9915_c0_g1_3571_TPlot.pdf
TRINITY_DN9915_c0_g1:3572	si_a111	TRINITY_DN9915_c0_g1	3561	3581	3572	-26.20	-17.90	0.683206106870229	15.5	7-20,3575-3562	1-6,3581-3576[UP5];21-21,3561-3561[UP3]	.((((((((((((((......&......)))))))))))))).	CGAGACAGGCUUGUGGGUCGG&AUAAAAUACGAGCUUGUUUUA	4	0.995135194918749	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a111_TRINITY_DN9915_c0_g1_3572_TPlot.pdf
TRINITY_DN9915_c0_g1:3773	si_s346	TRINITY_DN9915_c0_g1	3759	3790	3773	-34.40	-22.90	0.665697674418605	20	1-6,3790-3785;7-17,3776-3766;18-21,3762-3759	x-x,3784-3777[BULt];x-x,3765-3763[BULt]	((((...(((((((((((........((((((&))))))--------)))))))))))---))))	CUAUCUCUUCUUUGUCUCGGCCGUCACCCGUG&CACGGG--------GAGAUAAAGAA---AUAG	4	0.596776305289001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s346_TRINITY_DN9915_c0_g1_3773_TPlot.pdf
TRINITY_DN9915_c0_g1:3775	si_s344	TRINITY_DN9915_c0_g1	3764	3792	3775	-33.40	-23.10	0.691616766467066	20	1-8,3792-3785;9-19,3776-3766	x-x,3784-3777[BULt];20-21,3765-3764[UP3]	..(((((((((((........((((((((&))))))))--------)))))))))))..	UCUUCUUUGUCUCGGCCGUCACCCGUGGG&UUCACGGG--------GAGAUAAAGAAAU	4	0.579780917728663	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s344_TRINITY_DN9915_c0_g1_3775_TPlot.pdf
TRINITY_DN9915_c0_g1:758	si_a625	TRINITY_DN9915_c0_g1	747	767	758	-30.60	-21.60	0.705882352941177	10	3-9,765-759;11-17,757-751	1-2,767-766[UP5];10-10,758-758[SIL];18-21,750-747[UP3]	....(((((((.(((((((..&..))))))).)))))))....	ACCUUCGACGUCAUACGCCGC&UAGGCGUAUUAUGUCGAUUUU	3	0.875707508582187	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a625_TRINITY_DN9915_c0_g1_758_TPlot.pdf
TRINITY_DN9915_c0_g1:759	si_a624	TRINITY_DN9915_c0_g1	748	768	759	-32.30	-21.60	0.668730650154799	10.5	4-10,765-759;12-18,757-751	1-3,768-766[UP5];11-11,758-758[SIL];19-21,750-748[UP3]	...(((((((.(((((((...&...))))))).)))))))...	CCUUCGACGUCAUACGCCGCA&CUAGGCGUAUUAUGUCGAUUU	4	0.964706700990193	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN9915_c0_g1_759_TPlot.pdf
TRINITY_DN9915_c0_g1:789	si_a761	TRINITY_DN9915_c0_g1	777	798	789	-30.10	-22.00	0.730897009966777	8.5	1-9,798-790;12-15,787-784;16-20,782-778	10-11,789-788[SIL];x-x,783-783[BULt];21-21,777-777[UP3]	.(((((.((((..(((((((((&)))))))))..))))-))))).	CAUCAGUUCAACUACCCGGAGG&CCUUUGGGUUUUUGA-UUGAUU	2	0.899995243994429	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a761_TRINITY_DN9915_c0_g1_789_TPlot.pdf
TRINITY_DN9917_c0_g4:767	si_s87	TRINITY_DN9917_c0_g4	745	777	767	-32.90	-22.50	0.683890577507599	25.5	1-9,777-769;10-12,767-765;13-21,753-745	x-x,768-768[BULt];x-x,764-754[BULt]	(((((((((...........(((.(((((((((&)))))))))-)))-----------)))))))))	GAGCGAAGACAGAAUUAUGUAGAGAGAGAGGAA&UUCCUUUCU-UCU-----------UCUUCGCUU	1	0.338473920003944	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s87_TRINITY_DN9917_c0_g4_767_TPlot.pdf
TRINITY_DN991_c0_g1:992	si_s440	TRINITY_DN991_c0_g1	980	1001	992	-21.60	-15.20	0.703703703703704	5	1-8,1001-994;10-14,992-988;15-21,986-980	9-9,993-993[SIL];x-x,987-987[BULt]	(((((((.(((((.((((((((&)))))))).)))))-)))))))	UUGUUAUAAUGUACUGUGUAAU&AUUACAUAUUAUAU-AUAACAA	2	0.860053002253963	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s440_TRINITY_DN991_c0_g1_992_TPlot.pdf
TRINITY_DN991_c0_g1:993	si_s439	TRINITY_DN991_c0_g1	981	1002	993	-21.50	-14.70	0.683720930232558	5.5	2-9,1001-994;11-15,992-988;16-21,986-981	1-1,1002-1002[UP5];10-10,993-993[SIL];x-x,987-987[BULt]	((((((.(((((.((((((((.&.)))))))).)))))-))))))	UGUUAUAAUGUACUGUGUAAUG&AAUUACAUAUUAUAU-AUAACA	3	0.988363975505611	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s439_TRINITY_DN991_c0_g1_993_TPlot.pdf
TRINITY_DN9921_c0_g1:438	si_s114	TRINITY_DN9921_c0_g1	426	447	438	-26.60	-19.12	0.718796992481203	8	1-11,447-437;15-20,432-427	12-14,436-433[AILt];21-21,426-426[UP3]	.((((((....(((((((((((&)))))))))))-...)))))).	CCUUCUAAAUAUUCUGUUUUCC&GGAAAAUAGAA-AAAUAGAAGA	4	0.415326282242618	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s114_TRINITY_DN9921_c0_g1_438_TPlot.pdf
TRINITY_DN9921_c0_g1:484	si_s558	TRINITY_DN9921_c0_g1	472	493	484	-28.20	-19.90	0.705673758865248	10	5-17,489-477;18-21,475-472	1-4,493-490[UP5];x-x,476-476[BULt]	((((.(((((((((((((....&....)))))))))))))-))))	UUGUACCCGAAGAUAUUGGAAU&GAAUUAAUAUUUUCGGG-ACAA	2	0.586739265629142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s558_TRINITY_DN9921_c0_g1_484_TPlot.pdf
TRINITY_DN9926_c0_g1:181	si_a783	TRINITY_DN9926_c0_g1	170	190	181	-24.70	-16.10	0.651821862348178	10.5	3-9,188-182;11-17,180-174	1-2,190-189[UP5];10-10,181-181[SIL];18-21,173-170[UP3]	....(((((((.(((((((..&..))))))).)))))))....	CGCCAGAAGAAAGGAAGAGGG&AACUCUUCUAUUUUUCUAUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a783_TRINITY_DN9926_c0_g1_181_TPlot.pdf
TRINITY_DN9926_c0_g1:687	si_a333	TRINITY_DN9926_c0_g1	676	696	687	-30.60	-23.10	0.754901960784314	13.5	6-18,691-679	1-5,696-692[UP5];19-21,678-676[UP3]	...(((((((((((((.....&.....)))))))))))))...	AUAUCGGGGCGAGGAACAGUG&UUUUAUUCCUUGUCCCGAAAA	3	0.563949973910832	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a333_TRINITY_DN9926_c0_g1_687_TPlot.pdf
TRINITY_DN9926_c0_g1:715	si_s84	TRINITY_DN9926_c0_g1	703	724	715	-32.30	-24.10	0.746130030959752	5.5	1-13,724-712;15-20,709-704	14-14,711-710[AILt];21-21,703-703[UP3]	.((((((..(((((((((((((&)))))))))))))-.)))))).	GGAAGAAUAGAGAAGGGAGAGA&UCUUUCCUUUCUU-CUUCUUCG	4	0.999921640271965	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s84_TRINITY_DN9926_c0_g1_715_TPlot.pdf
TRINITY_DN9926_c0_g1:738	si_s72	TRINITY_DN9926_c0_g1	716	747	738	-24.10	-16.90	0.701244813278008	27	2-12,746-736;13-21,724-716	1-1,747-747[UP5];x-x,735-725[BULt]	(((((((((...........(((((((((((.&.)))))))))))-----------)))))))))	AGGGAGAGAUAAAGACGGGAGAAGAGAUAGAG&UUCUAUUUUUUU-----------UCUUUCCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9926_c0_g1_738_TPlot.pdf
TRINITY_DN9926_c0_g1:742	si_s68	TRINITY_DN9926_c0_g1	731	751	742	-23.10	-15.60	0.675324675324675	12	5-20,747-732	1-4,751-748[UP5];21-21,731-731[UP3]	.((((((((((((((((....&....)))))))))))))))).	CGGGAGAAGAGAUAGAGAUAA&CAACUUCUAUUUUUUUUCUUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9926_c0_g1_742_TPlot.pdf
TRINITY_DN9926_c0_g1:744	si_a554	TRINITY_DN9926_c0_g1	729	754	744	-34.40	-23.80	0.691860465116279	8	1-5,754-750;6-15,748-739;16-20,734-730	x-x,749-749[BULt];x-x,738-735[BULt];21-21,729-729[UP3]	.(((((....((((((((((.(((((&)))))-))))))))))----))))).	GACGGGAGAAGAGAUAGAGAUAAUAG&CUAUU-UCUUUAUCUC----CCCGUG	3	0.937551244170909	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a554_TRINITY_DN9926_c0_g1_744_TPlot.pdf
TRINITY_DN9926_c0_g1:805	si_s64	TRINITY_DN9926_c0_g1	794	814	805	-24.10	-16.10	0.66804979253112	11	2-12,813-803	1-1,814-814[UP5];13-21,802-794[UP3]	.........(((((((((((.&.))))))))))).........	AGAUGUUUAAGAAGUUGCUGG&UUAGCAACUUCUAUUUUUUUU	2	0.999999200481274	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s64_TRINITY_DN9926_c0_g1_805_TPlot.pdf
TRINITY_DN9926_c0_g1:869	si_s73	TRINITY_DN9926_c0_g1	853	878	869	-24.00	-19.60	0.816666666666667	9.5	1-15,878-864;16-21,858-853	x-x,863-859[BULt]	((((((.....(((((((((((((((&)))))))))))))))-----))))))	AGAGGAACAAAAAGAGAAGAAGUGGA&UCUAUUUUUUUUCUU-----UCCUUU	3	0.991411295327754	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s73_TRINITY_DN9926_c0_g1_869_TPlot.pdf
TRINITY_DN9926_c0_g1:870	si_s72	TRINITY_DN9926_c0_g1	854	879	870	-24.10	-19.00	0.788381742738589	10.5	2-16,878-864;17-21,858-854	1-1,879-879[UP5];x-x,863-859[BULt]	(((((.....(((((((((((((((.&.)))))))))))))))-----)))))	GAGGAACAAAAAGAGAAGAAGUGGAG&UUCUAUUUUUUUUCUU-----UCCUU	3	0.99976612285877	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9926_c0_g1_870_TPlot.pdf
TRINITY_DN9926_c0_g1:871	si_s71	TRINITY_DN9926_c0_g1	855	880	871	-25.70	-18.50	0.719844357976654	10.5	2-17,879-864;18-21,858-855	1-1,880-880[UP5];x-x,863-859[BULt]	((((.....((((((((((((((((.&.))))))))))))))))-----))))	AGGAACAAAAAGAGAAGAAGUGGAGA&CUUCUAUUUUUUUUCUU-----UCCU	3	0.999999999996203	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9926_c0_g1_871_TPlot.pdf
TRINITY_DN9926_c0_g1:874	si_s68	TRINITY_DN9926_c0_g1	863	883	874	-23.10	-16.60	0.718614718614719	11	5-21,879-863	1-4,883-880[UP5]	(((((((((((((((((....&....)))))))))))))))))	AAAGAGAAGAAGUGGAGAGAG&CAACUUCUAUUUUUUUUCUUU	2	0.999977256742893	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN9926_c0_g1_874_TPlot.pdf
TRINITY_DN9926_c0_g1:875	si_s67	TRINITY_DN9926_c0_g1	864	886	875	-25.60	-16.86	0.65859375	14	1-2,886-885;6-21,879-864	3-5,884-880[AILt]	((((((((((((((((.....((&))--...))))))))))))))))	AAGAGAAGAAGUGGAGAGAGGGC&GC--AACUUCUAUUUUUUUUCUU	2	0.999999991056292	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN9926_c0_g1_875_TPlot.pdf
TRINITY_DN9926_c0_g1:876	si_s81	TRINITY_DN9926_c0_g1	864	885	876	-28.90	-20.90	0.72318339100346	9	1-10,885-876;11-19,874-866	x-x,875-875[BULt];20-21,865-864[UP3]	..(((((((((.((((((((((&))))))))))-)))))))))..	AAGAGAAGAAGUGGAGAGAGGG&UUUUCUUUCC-UUUCUUCUUCU	4	0.99999999999998	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s81_TRINITY_DN9926_c0_g1_876_TPlot.pdf
TRINITY_DN9926_c0_g1:963	si_s89	TRINITY_DN9926_c0_g1	953	972	963	-35.30	-23.70	0.671388101983003	5.5	1-15,972-958;18-20,956-954	16-17,957-957[AILq];21-21,953-953[UP3]	.(((.-(((((((((((((((&)))))))))))))))..))).	AGAAA-GAGGAAGGAGGAAGG&CCUUUCUUCUUCUUCGCUUCG	4	0.999999999999421	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s89_TRINITY_DN9926_c0_g1_963_TPlot.pdf
TRINITY_DN9930_c1_g1:136	si_s10	TRINITY_DN9930_c1_g1	124	145	136	-23.80	-15.80	0.663865546218487	10	3-13,143-133;15-21,130-124	1-2,145-144[UP5];14-14,132-131[AILt]	(((((((..(((((((((((..&..)))))))))))-.)))))))	UCAAUAUUUGUAGUGGUGGGAU&UACUUAUUAUUAC-UAUAUUGA	4	0.995789715864189	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s10_TRINITY_DN9930_c1_g1_136_TPlot.pdf
TRINITY_DN9931_c0_g1:4840	si_a637	TRINITY_DN9931_c0_g1	4829	4849	4840	-25.80	-17.70	0.686046511627907	12	1-7,4849-4843;9-16,4841-4834	8-8,4842-4842[SIL];17-21,4833-4829[UP3]	.....((((((((.(((((((&))))))).)))))))).....	CCCGCACUCAGAGCGGUCGGC&GUCGAUUUUUUUGAGUAAUAU	3	0.999995104979434	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a637_TRINITY_DN9931_c0_g1_4840_TPlot.pdf
TRINITY_DN9931_c0_g1:4841	si_a636	TRINITY_DN9931_c0_g1	4830	4850	4841	-26.30	-18.70	0.711026615969582	11	1-8,4850-4843;10-17,4841-4834	9-9,4842-4842[SIL];18-21,4833-4830[UP3]	....((((((((.((((((((&)))))))).))))))))....	CCGCACUCAGAGCGGUCGGCA&UGUCGAUUUUUUUGAGUAAUA	3	0.998524153066047	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a636_TRINITY_DN9931_c0_g1_4841_TPlot.pdf
TRINITY_DN9931_c0_g1:4842	si_a635	TRINITY_DN9931_c0_g1	4831	4851	4842	-26.10	-18.70	0.716475095785441	10.5	2-9,4850-4843;11-18,4841-4834	1-1,4851-4851[UP5];10-10,4842-4842[SIL];19-21,4833-4831[UP3]	...((((((((.((((((((.&.)))))))).))))))))...	CGCACUCAGAGCGGUCGGCAA&AUGUCGAUUUUUUUGAGUAAU	3	0.999343296348157	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a635_TRINITY_DN9931_c0_g1_4842_TPlot.pdf
TRINITY_DN9931_c0_g1:4845	si_a632	TRINITY_DN9931_c0_g1	4834	4854	4845	-26.10	-18.50	0.708812260536398	12	5-12,4850-4843;14-21,4841-4834	1-4,4854-4851[UP5];13-13,4842-4842[SIL]	((((((((.((((((((....&....)))))))).))))))))	ACUCAGAGCGGUCGGCAAUAU&AUUAUGUCGAUUUUUUUGAGU	2	0.979921199730961	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a632_TRINITY_DN9931_c0_g1_4845_TPlot.pdf
TRINITY_DN9931_c0_g1:5530	si_s50	TRINITY_DN9931_c0_g1	5519	5539	5530	-29.00	-18.90	0.651724137931034	10	4-16,5536-5524;18-20,5522-5520	1-3,5539-5537[UP5];17-17,5523-5523[SIL];21-21,5519-5519[UP3]	.(((.(((((((((((((...&...))))))))))))).))).	CUGUGGACUUGAGAUCUAUGC&AAUUGGAUUUCAAGUUAGCAA	4	0.998436859556198	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s50_TRINITY_DN9931_c0_g1_5530_TPlot.pdf
TRINITY_DN9931_c0_g1:5534	si_s46	TRINITY_DN9931_c0_g1	5523	5543	5534	-25.00	-16.30	0.652	16	8-20,5536-5524	1-7,5543-5537[UP5];21-21,5523-5523[UP3]	.(((((((((((((.......&.......))))))))))))).	GGACUUGAGAUCUAUGCUAAU&UAAUAAUUGGAUUUCAAGUUA	3	0.999212055541194	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s46_TRINITY_DN9931_c0_g1_5534_TPlot.pdf
TRINITY_DN9932_c0_g1:364	si_a324	TRINITY_DN9932_c0_g1	353	373	364	-27.50	-18.40	0.669090909090909	6	1-10,373-364;12-14,362-360;17-20,357-354	11-11,363-363[SIL];15-16,359-358[SIL];21-21,353-353[UP3]	.((((..(((.((((((((((&)))))))))).)))..)))).	GAGGGUCUGAUAAAAUCAUGG&CCAUGAUUUUUUUAUUCCUUG	3	0.999962937540519	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a324_TRINITY_DN9932_c0_g1_364_TPlot.pdf
TRINITY_DN9932_c0_g1:365	si_a323	TRINITY_DN9932_c0_g1	354	374	365	-26.80	-19.30	0.720149253731343	5	1-11,374-364;13-15,362-360;18-21,357-354	12-12,363-363[SIL];16-17,359-358[SIL]	((((..(((.(((((((((((&))))))))))).)))..))))	AGGGUCUGAUAAAAUCAUGGA&UCCAUGAUUUUUUUAUUCCUU	3	0.98812601696918	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a323_TRINITY_DN9932_c0_g1_365_TPlot.pdf
TRINITY_DN9932_c0_g1:366	si_a322	TRINITY_DN9932_c0_g1	355	375	366	-27.00	-18.50	0.685185185185185	5	2-12,374-364;14-16,362-360;19-21,357-355	1-1,375-375[UP5];13-13,363-363[SIL];17-18,359-358[SIL]	(((..(((.(((((((((((.&.))))))))))).)))..)))	GGGUCUGAUAAAAUCAUGGAC&AUCCAUGAUUUUUUUAUUCCU	4	0.999813526488109	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a322_TRINITY_DN9932_c0_g1_366_TPlot.pdf
TRINITY_DN9932_c0_g1:367	si_a321	TRINITY_DN9932_c0_g1	356	376	367	-26.70	-17.40	0.651685393258427	6.5	3-13,374-364;15-17,362-360;20-21,357-356	1-2,376-375[UP5];14-14,363-363[SIL];18-19,359-358[SIL]	((..(((.(((((((((((..&..))))))))))).)))..))	GGUCUGAUAAAAUCAUGGACA&UAUCCAUGAUUUUUUUAUUCC	0	0.294047083307051	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a321_TRINITY_DN9932_c0_g1_367_TPlot.pdf
TRINITY_DN9934_c0_g1:200	si_a642	TRINITY_DN9934_c0_g1	189	209	200	-25.90	-18.10	0.698841698841699	8	3-6,207-204;8-21,202-189	1-2,209-208[UP5];7-7,203-203[SIL]	((((((((((((((.((((..&..)))).))))))))))))))	CUGAUAUGUUACUUUGAAAUA&UUUUUUUGAGUAAUAUAUCGG	4	0.957501263442222	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a642_TRINITY_DN9934_c0_g1_200_TPlot.pdf
TRINITY_DN9936_c0_g1:217	si_s519	TRINITY_DN9936_c0_g1	203	227	217	-24.40	-16.50	0.676229508196721	5.5	1-6,227-222;7-15,220-212;16-21,208-203	x-x,221-221[BULt];x-x,211-209[BULt]	((((((...(((((((((.((((((&))))))-)))))))))---))))))	AAUGAUUUCUUCGAAUUACAGAAUG&UAUUCU-UAAUUCGAA---AUCAUU	3	0.928044106493135	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s519_TRINITY_DN9936_c0_g1_217_TPlot.pdf
TRINITY_DN9936_c0_g1:346	si_a71	TRINITY_DN9936_c0_g1	335	354	346	-23.30	-15.50	0.665236051502146	8.5	1-9,354-346;11-17,345-339	10-10,x-x[BULq];18-21,338-335[UP3]	....(((((((-(((((((((&))))))))).)))))))....	GUCCGAAGAGC-AUUUGGAAG&CUUUCAAAUUGUUUUUCAUUA	4	0.999999999973609	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a71_TRINITY_DN9936_c0_g1_346_TPlot.pdf
TRINITY_DN9939_c0_g1:757	si_s86	TRINITY_DN9939_c0_g1	747	766	757	-32.90	-22.80	0.693009118541034	7	3-5,764-762;7-16,760-751;18-20,750-748	1-2,766-765[UP5];6-6,761-761[SIL];17-17,x-x[BULq];21-21,747-747[UP3]	.(((-((((((((((.(((..&..))).)))))))))).))).	UGCG-AGAAGAAGAAUGGACU&UUUCCUUUCUUCUUCUUCGCU	4	0.999999999998831	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s86_TRINITY_DN9939_c0_g1_757_TPlot.pdf
TRINITY_DN9942_c0_g1:690	si_s255	TRINITY_DN9942_c0_g1	678	699	690	-29.40	-19.60	0.666666666666667	7	1-12,699-688;14-15,686-685;16-17,683-682	13-13,687-687[SIL];x-x,684-684[BULt];18-21,681-678[UP3]	....((.((.((((((((((((&)))))))))))).))-))....	CUCCGACGUCGUAUAUCGGGAA&UUCCCGAUAUAUUAC-UCAAAA	2	0.704687920619496	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s255_TRINITY_DN9942_c0_g1_690_TPlot.pdf
TRINITY_DN9947_c0_g1:908	si_a763	TRINITY_DN9947_c0_g1	893	917	908	-28.80	-19.06	0.661805555555556	14.5	1-11,917-907;14-20,900-894	12-13,906-901[AILt];21-21,893-893[UP3]	.(((((((......(((((((((((&)))))))))))----..))))))).	CGAGUCAAAGAAGGAAGAGCCCAAA&UUUGGGUUUUU----GAUUGAUUCA	4	0.999999999515261	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a763_TRINITY_DN9947_c0_g1_908_TPlot.pdf
TRINITY_DN9947_c0_g1:964	si_a346	TRINITY_DN9947_c0_g1	953	973	964	-25.90	-17.22	0.664864864864865	12.5	1-4,973-970;11-21,963-953	5-10,969-964[SIL]	(((((((((((......((((&))))......)))))))))))	AAUGGAAUUAAGUGAAGCGGG&CCCGAAAAUAUUAAUUCUAUU	3	0.862467961799734	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a346_TRINITY_DN9947_c0_g1_964_TPlot.pdf
TRINITY_DN9948_c1_g1:3008	si_a26	TRINITY_DN9948_c1_g1	2997	3017	3008	-28.00	-18.20	0.65	8.5	1-17,3017-3001	18-21,3000-2997[UP3]	....(((((((((((((((((&)))))))))))))))))....	UCCACUUAGGACUAGAAGUGG&UUAUUUUUAGUUCUAAGACCG	4	0.999241024410392	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a26_TRINITY_DN9948_c1_g1_3008_TPlot.pdf
TRINITY_DN9948_c3_g1:71	si_s421	TRINITY_DN9948_c3_g1	60	80	71	-23.00	-17.20	0.747826086956522	8	2-5,79-76;7-20,74-61	1-1,80-80[UP5];6-6,75-75[SIL];21-21,60-60[UP3]	.((((((((((((((.((((.&.)))).)))))))))))))).	UUUAUUGUUGUGUAGUGUGUA&CAUAUUCUAUAUAACAAUAAU	4	0.514454639941284	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s421_TRINITY_DN9948_c3_g1_71_TPlot.pdf
TRINITY_DN994_c0_g1:1945	si_s66	TRINITY_DN994_c0_g1	1934	1956	1945	-26.30	-17.90	0.680608365019011	8	1-8,1956-1949;10-21,1945-1934	9-9,1948-1946[AILt]	((((((((((((...((((((((&))))))))--.))))))))))))	AGGAAAGAAAUAAUCAGGUUGCU&AGCAACUU--CUAUUUUUUUUCU	2	0.999677759419181	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s66_TRINITY_DN994_c0_g1_1945_TPlot.pdf
TRINITY_DN994_c0_g1:1946	si_s65	TRINITY_DN994_c0_g1	1935	1957	1946	-26.00	-17.50	0.673076923076923	8.5	1-9,1957-1949;11-21,1945-1935	10-10,1948-1946[AILt]	(((((((((((...(((((((((&)))))))))--.)))))))))))	GGAAAGAAAUAAUCAGGUUGCUG&UAGCAACUU--CUAUUUUUUUUC	2	0.999421598995741	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s65_TRINITY_DN994_c0_g1_1946_TPlot.pdf
TRINITY_DN994_c0_g1:2069	si_s486	TRINITY_DN994_c0_g1	2058	2078	2069	-18.10	-11.80	0.651933701657459	4	1-11,2078-2068;14-20,2065-2059	12-13,2067-2066[SIL];21-21,2058-2058[UP3]	.(((((((..(((((((((((&)))))))))))..))))))).	AUUUAUAUGCAAAUAAAUAUA&UAUAUUUAUUUAAAUAUAAAC	3	0.999867316335828	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s486_TRINITY_DN994_c0_g1_2069_TPlot.pdf
TRINITY_DN994_c0_g1:2070	si_s485	TRINITY_DN994_c0_g1	2059	2079	2070	-18.10	-12.00	0.662983425414365	3	2-12,2078-2068;15-21,2065-2059	1-1,2079-2079[UP5];13-14,2067-2066[SIL]	(((((((..(((((((((((.&.)))))))))))..)))))))	UUUAUAUGCAAAUAAAUAUAU&CUAUAUUUAUUUAAAUAUAAA	3	0.999994126720142	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s485_TRINITY_DN994_c0_g1_2070_TPlot.pdf
TRINITY_DN9953_c0_g1:660	si_a450	TRINITY_DN9953_c0_g1	649	669	660	-25.20	-17.80	0.706349206349206	8.5	3-7,667-663;9-19,661-651	1-2,669-668[UP5];8-8,662-662[SIL];20-21,650-649[UP3]	..(((((((((((.(((((..&..))))).)))))))))))..	UGAUAUGACAACAUUUGUCAG&GAGAUAAUUGUUGUUAUAUAU	3	0.953905741499266	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a450_TRINITY_DN9953_c0_g1_660_TPlot.pdf
TRINITY_DN9953_c0_g1:661	si_a449	TRINITY_DN9953_c0_g1	650	670	661	-25.70	-17.80	0.692607003891051	9.5	4-8,667-663;10-20,661-651	1-3,670-668[UP5];9-9,662-662[SIL];21-21,650-650[UP3]	.(((((((((((.(((((...&...))))).))))))))))).	GAUAUGACAACAUUUGUCAGC&UGAGAUAAUUGUUGUUAUAUA	3	0.973314932236676	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a449_TRINITY_DN9953_c0_g1_661_TPlot.pdf
TRINITY_DN9953_c0_g1:662	si_a448	TRINITY_DN9953_c0_g1	651	671	662	-25.50	-17.40	0.68235294117647	10.5	5-9,667-663;11-21,661-651	1-4,671-668[UP5];10-10,662-662[SIL]	(((((((((((.(((((....&....))))).)))))))))))	AUAUGACAACAUUUGUCAGCC&AUGAGAUAAUUGUUGUUAUAU	3	0.996941235685265	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a448_TRINITY_DN9953_c0_g1_662_TPlot.pdf
TRINITY_DN9954_c0_g1:3489	si_s825	TRINITY_DN9954_c0_g1	3480	3498	3489	-21.30	-14.10	0.661971830985915	7	3-11,3496-3488;14-21,3487-3480	1-2,3498-3497[UP5];12-13,x-x[BULq]	((((((((--(((((((((..&..)))))))))..))))))))	CAAAUUGU--UUCAUUGUUCU&UUAAUAAUGAAAAACAAUUUG	4	0.954786241843084	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s825_TRINITY_DN9954_c0_g1_3489_TPlot.pdf
TRINITY_DN9958_c0_g2:1988	si_a647	TRINITY_DN9958_c0_g2	1977	1997	1988	-29.50	-19.80	0.671186440677966	7	2-10,1996-1988;12-15,1986-1983;17-19,1981-1979	1-1,1997-1997[UP5];11-11,1987-1987[SIL];16-16,1982-1982[SIL];20-21,1978-1977[UP3]	..(((.((((.(((((((((.&.))))))))).)))).)))..	AGUUCGCGAUUUAUUGCUCAU&UUGAGUAAUAUAUCGGGAAAU	4	0.940869190973143	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a647_TRINITY_DN9958_c0_g2_1988_TPlot.pdf
TRINITY_DN9958_c1_g1:225	si_a470	TRINITY_DN9958_c1_g1	214	234	225	-21.30	-14.10	0.661971830985915	12.5	6-18,229-217	1-5,234-230[UP5];19-21,216-214[UP3]	...(((((((((((((.....&.....)))))))))))))...	ACAGACAAUAAUUACAGAAUG&UAAUAUGUAAUUAUUGUUAUA	4	0.99999848013799	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a470_TRINITY_DN9958_c1_g1_225_TPlot.pdf
TRINITY_DN995_c5_g1:24	si_a205	TRINITY_DN995_c5_g1	12	33	24	-24.70	-16.90	0.684210526315789	9	1-12,33-22;13-16,20-17	x-x,21-21[BULt];17-21,16-12[UP3]	.....((((.((((((((((((&))))))))))))-)))).....	GGCCCUAGUACGGUUUGUUAGU&ACUAAUAAAUCG-ACUAAUUAA	4	0.704148956503723	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a205_TRINITY_DN995_c5_g1_24_TPlot.pdf
TRINITY_DN995_c5_g1:57	si_a762	TRINITY_DN995_c5_g1	43	66	57	-29.70	-19.70	0.663299663299663	10	2-10,65-57;11-18,53-46;21-21,43-43	1-1,66-66[UP5];x-x,56-54[BULt];19-20,45-44[SIL]	(..((((((((...(((((((((.&.)))))))))---))))))))..)	GUUUCAAUCAAAGUAAACCCAGAA&CUUUGGGUUU---UUGAUUGAUUC	3	0.999999984408635	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a762_TRINITY_DN995_c5_g1_57_TPlot.pdf
TRINITY_DN9962_c0_g1:1486	si_s72	TRINITY_DN9962_c0_g1	1475	1495	1486	-24.10	-19.60	0.813278008298755	8	2-15,1494-1481;17-21,1479-1475	1-1,1495-1495[UP5];16-16,1480-1480[SIL]	(((((.((((((((((((((.&.)))))))))))))).)))))	GAGGACGGAAAGAAGGUGGGC&UUCUAUUUUUUUUCUUUCCUU	2	0.953773347888716	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9962_c0_g1_1486_TPlot.pdf
TRINITY_DN9962_c0_g1:1488	si_s70	TRINITY_DN9962_c0_g1	1477	1497	1488	-25.80	-17.10	0.662790697674419	11.5	4-17,1494-1481;19-21,1479-1477	1-3,1497-1495[UP5];18-18,1480-1480[SIL]	(((.((((((((((((((...&...)))))))))))))).)))	GGACGGAAAGAAGGUGGGCAU&ACUUCUAUUUUUUUUCUUUCC	2	0.999999999999995	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9962_c0_g1_1488_TPlot.pdf
TRINITY_DN9962_c0_g1:1792	si_s78	TRINITY_DN9962_c0_g1	1781	1802	1792	-26.20	-17.70	0.675572519083969	10.5	1-7,1802-1796;8-19,1794-1783	x-x,1795-1795[BULt];20-21,1782-1781[UP3]	..((((((((((((.(((((((&)))))))-))))))))))))..	AUGAGAGAGGAGGGCAGGGAAG&UUUUUUU-CUUUCCUUUCUUCU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s78_TRINITY_DN9962_c0_g1_1792_TPlot.pdf
TRINITY_DN996_c0_g1:5261	si_s808	TRINITY_DN996_c0_g1	5250	5269	5261	-28.60	-18.80	0.657342657342657	7	1-9,5269-5261;11-17,5260-5254	10-10,x-x[BULq];18-21,5253-5250[UP3]	....(((((((-(((((((((&))))))))).)))))))....	AAAUGAAAAGG-AAUGAAGAU&AUCUUCGUUACCUUUUCUUAA	4	0.999999999998159	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s808_TRINITY_DN996_c0_g1_5261_TPlot.pdf
TRINITY_DN9979_c0_g1:638	si_a873	TRINITY_DN9979_c0_g1	627	647	638	-27.00	-18.00	0.666666666666667	14	7-19,641-629	1-6,647-642[UP5];20-21,628-627[UP3]	..(((((((((((((......&......)))))))))))))..	GAGAUUGCAGCUAAAGUGACU&UAAAGAUUUAGUUGCAAUCAA	4	0.986623462468888	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a873_TRINITY_DN9979_c0_g1_638_TPlot.pdf
TRINITY_DN9979_c0_g1:639	si_a872	TRINITY_DN9979_c0_g1	628	648	639	-27.00	-18.00	0.666666666666667	14.5	8-20,641-629	1-7,648-642[UP5];21-21,628-628[UP3]	.(((((((((((((.......&.......))))))))))))).	AGAUUGCAGCUAAAGUGACUG&UUAAAGAUUUAGUUGCAAUCA	4	0.987683586476076	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a872_TRINITY_DN9979_c0_g1_639_TPlot.pdf
TRINITY_DN9979_c0_g1:803	si_s822	TRINITY_DN9979_c0_g1	793	812	803	-22.30	-14.50	0.650224215246637	6	2-11,811-802;13-20,801-794	1-1,812-812[UP5];12-12,x-x[BULq];21-21,793-793[UP3]	.((((((((-((((((((((.&.)))))))))).)))))))).	CUUGUUUUU-GUUAUUAGGAU&UUCUUAAUAAUGAAAAACAAU	2	0.911698574034005	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s822_TRINITY_DN9979_c0_g1_803_TPlot.pdf
TRINITY_DN9988_c0_g1:1443	si_s793	TRINITY_DN9988_c0_g1	1432	1451	1443	-30.50	-23.00	0.754098360655738	5	2-9,1450-1443;11-21,1442-1432	1-1,1451-1451[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	GGAGAUAAGAU-CGAGUUUGA&ACAAGCUCGUAUUUUAUCUUC	4	0.365001027787447	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN9988_c0_g1_1443_TPlot.pdf
TRINITY_DN9988_c0_g1:1475	si_s793	TRINITY_DN9988_c0_g1	1464	1483	1475	-30.50	-23.60	0.773770491803279	5	2-9,1482-1475;11-21,1474-1464	1-1,1483-1483[UP5];10-10,x-x[BULq]	(((((((((((-((((((((.&.)))))))).)))))))))))	GAAGAUGAGAU-CGAGUUUGA&ACAAGCUCGUAUUUUAUCUUC	3	0.261886679906242	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s793_TRINITY_DN9988_c0_g1_1475_TPlot.pdf
TRINITY_DN9988_c0_g1:601	si_s600	TRINITY_DN9988_c0_g1	588	610	601	-28.20	-18.60	0.659574468085106	11.5	3-10,608-601;12-19,597-590	1-2,610-609[UP5];11-11,600-598[AILt];20-21,589-588[UP3]	..((((((((...((((((((..&..))))))))--.))))))))..	UCGAAAAGAUCCACGCUUGGAAA&AAUCCAAGCG--AAUCUUUUUUA	3	0.998399673834738	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s600_TRINITY_DN9988_c0_g1_601_TPlot.pdf
TRINITY_DN9988_c0_g1:772	si_a117	TRINITY_DN9988_c0_g1	761	781	772	-31.00	-22.10	0.712903225806452	8.5	1-6,781-776;9-19,773-763	7-8,775-774[SIL];20-21,762-761[UP3]	..(((((((((((..((((((&))))))..)))))))))))..	GGGCUGUAGAGCACACUCGUG&UACGAGCUUGUUUUAUAGCAA	4	0.749184596586649	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a117_TRINITY_DN9988_c0_g1_772_TPlot.pdf
TRINITY_DN9989_c0_g1:1054	si_s377	TRINITY_DN9989_c0_g1	1038	1063	1054	-44.10	-29.50	0.668934240362812	16.5	1-10,1063-1054;12-12,1052-1052;13-19,1046-1040	11-11,1053-1053[SIL];x-x,1051-1047[BULt];20-21,1039-1038[UP3]	..(((((((.....(.((((((((((&)))))))))).)-----)))))))..	GCAAGGCGGGAUCAAGGCGCGGGCGG&UCGCUCGCGUGU-----CCGCCUUAC	4	0.991849448244201	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s377_TRINITY_DN9989_c0_g1_1054_TPlot.pdf
TRINITY_DN9989_c0_g1:1055	si_s376	TRINITY_DN9989_c0_g1	1039	1064	1055	-42.50	-30.80	0.724705882352941	11	1-11,1064-1054;13-13,1052-1052;14-20,1046-1040	12-12,1053-1053[SIL];x-x,1051-1047[BULt];21-21,1039-1039[UP3]	.(((((((.....(.(((((((((((&))))))))))).)-----))))))).	CAAGGCGGGAUCAAGGCGCGGGCGGU&AUCGCUCGCGUGU-----CCGCCUUA	3	0.817404933467001	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s376_TRINITY_DN9989_c0_g1_1055_TPlot.pdf
TRINITY_DN9989_c0_g1:1056	si_s375	TRINITY_DN9989_c0_g1	1040	1065	1056	-44.10	-34.40	0.780045351473923	9	1-12,1065-1054;14-14,1052-1052;15-21,1046-1040	13-13,1053-1053[SIL];x-x,1051-1047[BULt]	(((((((.....(.((((((((((((&)))))))))))).)-----)))))))	AAGGCGGGAUCAAGGCGCGGGCGGUC&GAUCGCUCGCGUGU-----CCGCCUU	4	0.152224036632451	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s375_TRINITY_DN9989_c0_g1_1056_TPlot.pdf
TRINITY_DN9989_c0_g1:1138	si_a755	TRINITY_DN9989_c0_g1	1127	1147	1138	-34.90	-22.80	0.653295128939828	6.5	1-11,1147-1137;13-13,1135-1135;16-20,1132-1128	12-12,1136-1136[SIL];14-15,1134-1133[SIL];21-21,1127-1127[UP3]	.(((((..(.(((((((((((&))))))))))).)..))))).	ACAAAAUGUGGAAGGAGGUUC&GAACCUCCUUUGGGUUUUUGA	4	0.9999970577487	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a755_TRINITY_DN9989_c0_g1_1138_TPlot.pdf
TRINITY_DN9989_c0_g1:1139	si_a754	TRINITY_DN9989_c0_g1	1128	1148	1139	-34.60	-22.90	0.661849710982659	5.5	2-12,1147-1137;14-14,1135-1135;17-21,1132-1128	1-1,1148-1148[UP5];13-13,1136-1136[SIL];15-16,1134-1133[SIL]	(((((..(.(((((((((((.&.))))))))))).)..)))))	CAAAAUGUGGAAGGAGGUUCG&UGAACCUCCUUUGGGUUUUUG	3	0.999847116704208	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN9989_c0_g1_1139_TPlot.pdf
TRINITY_DN9989_c0_g1:1244	si_a671	TRINITY_DN9989_c0_g1	1232	1253	1244	-32.10	-20.90	0.651090342679128	8.5	3-8,1251-1246;10-18,1244-1236;19-21,1234-1232	1-2,1253-1252[UP5];9-9,1245-1245[SIL];x-x,1235-1235[BULt]	(((.(((((((((.((((((..&..)))))).)))))))))-)))	CGCUGUGGAUGAGUGAUCAAAA&UAUUGAUUCCUUAUUCAC-GCG	3	0.972769218391489	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a671_TRINITY_DN9989_c0_g1_1244_TPlot.pdf
TRINITY_DN998_c0_g1:1042	si_a525	TRINITY_DN998_c0_g1	1026	1052	1042	-44.10	-28.80	0.653061224489796	12	3-9,1050-1044;10-14,1042-1038;15-20,1032-1027	1-2,1052-1051[UP5];x-x,1043-1043[BULt];x-x,1037-1033[BULt];21-21,1026-1026[UP3]	.((((((.....(((((.(((((((..&..)))))))-)))))-----)))))).	UGUCGCUGUUGCUGCGUCGUCCGCCAG&AAGGCGGAC-ACGCG-----AGCGAUC	3	0.889923627163422	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a525_TRINITY_DN998_c0_g1_1042_TPlot.pdf
TRINITY_DN998_c0_g1:1044	si_a524	TRINITY_DN998_c0_g1	1027	1053	1044	-42.50	-28.80	0.677647058823529	13	4-10,1050-1044;11-15,1042-1038;16-21,1032-1027	1-3,1053-1051[UP5];x-x,1043-1043[BULt];x-x,1037-1033[BULt]	((((((.....(((((.(((((((...&...)))))))-)))))-----))))))	GUCGCUGUUGCUGCGUCGUCCGCCAGG&UAAGGCGGAC-ACGCG-----AGCGAU	3	0.762435030063936	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a524_TRINITY_DN998_c0_g1_1044_TPlot.pdf
TRINITY_DN998_c0_g1:769	si_s92	TRINITY_DN998_c0_g1	757	777	769	-34.90	-22.70	0.650429799426934	5	1-8,777-770;10-13,769-766;14-19,764-759	9-9,x-x[BULq];x-x,765-765[BULt];20-21,758-757[UP3]	..((((((.((((-((((((((&)))))))).))))-))))))..	CGCCGAAGACGAA-AAGAAGAA&UUCUUCUUCUUCG-CUUCGGAU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s92_TRINITY_DN998_c0_g1_769_TPlot.pdf
TRINITY_DN998_c0_g1:770	si_s91	TRINITY_DN998_c0_g1	758	778	770	-34.70	-23.10	0.665706051873199	4.5	1-9,778-770;11-14,769-766;15-20,764-759	10-10,x-x[BULq];x-x,765-765[BULt];21-21,758-758[UP3]	.((((((.((((-(((((((((&))))))))).))))-)))))).	GCCGAAGACGAA-AAGAAGAAG&UUUCUUCUUCUUCG-CUUCGGA	4	0.999999999999988	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s91_TRINITY_DN998_c0_g1_770_TPlot.pdf
TRINITY_DN998_c0_g1:772	si_s68	TRINITY_DN998_c0_g1	761	781	772	-23.10	-16.90	0.731601731601731	5	1-8,781-774;10-15,772-767;17-21,765-761	9-9,773-773[SIL];16-16,766-766[SIL]	(((((.((((((.((((((((&)))))))).)))))).)))))	GAAGACGAAAAGAAGAAGUUG&CAACUUCUAUUUUUUUUCUUU	3	0.999997865526154	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s68_TRINITY_DN998_c0_g1_772_TPlot.pdf
TRINITY_DN998_c0_g1:773	si_s67	TRINITY_DN998_c0_g1	762	782	773	-25.60	-17.80	0.6953125	5	1-9,782-774;11-16,772-767;18-21,765-762	10-10,773-773[SIL];17-17,766-766[SIL]	((((.((((((.(((((((((&))))))))).)))))).))))	AAGACGAAAAGAAGAAGUUGU&GCAACUUCUAUUUUUUUUCUU	4	0.999999720304535	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s67_TRINITY_DN998_c0_g1_773_TPlot.pdf
TRINITY_DN9993_c0_g1:626	si_a445	TRINITY_DN9993_c0_g1	614	635	626	-27.30	-18.90	0.692307692307692	8	1-10,635-626;11-16,624-619;18-19,617-616	x-x,625-625[BULt];17-17,618-618[SIL];20-21,615-614[UP3]	..((.((((((.((((((((((&))))))))))-)))))).))..	AUGCUGCAAUUGAUCUCGUGUC&GAUAUGAGAU-AAUUGUUGUUA	3	0.90052014930389	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a445_TRINITY_DN9993_c0_g1_626_TPlot.pdf
TRINITY_DN9995_c0_g1:1494	si_s491	TRINITY_DN9995_c0_g1	1484	1503	1494	-19.50	-13.10	0.671794871794872	5	1-14,1503-1490;16-20,1489-1485	15-15,x-x[BULq];21-21,1484-1484[UP3]	.(((((-((((((((((((((&)))))))))))))).))))).	UUUUUG-UUGUAUUUAGGUAA&UUAUUUAAAUAUAAACAAAAC	4	0.975152105696772	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s491_TRINITY_DN9995_c0_g1_1494_TPlot.pdf
TRINITY_DN9995_c0_g1:1495	si_s490	TRINITY_DN9995_c0_g1	1485	1504	1495	-17.80	-13.80	0.775280898876405	3.5	1-15,1504-1490;17-21,1489-1485	16-16,x-x[BULq]	(((((-(((((((((((((((&))))))))))))))).)))))	UUUUG-UUGUAUUUAGGUAAA&UUUAUUUAAAUAUAAACAAAA	4	0.710193419346026	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s490_TRINITY_DN9995_c0_g1_1495_TPlot.pdf
TRINITY_DN9998_c0_g1:1032	si_a758	TRINITY_DN9998_c0_g1	1021	1041	1032	-34.00	-23.30	0.685294117647059	9	1-16,1041-1026	17-21,1025-1021[UP3]	.....((((((((((((((((&)))))))))))))))).....	CUCGGAAGGACCUGGAGGAGG&CCUCCUUUGGGUUUUUGAUUG	2	0.992488623126232	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a758_TRINITY_DN9998_c0_g1_1032_TPlot.pdf
TRINITY_DN9998_c0_g1:1034	si_a756	TRINITY_DN9998_c0_g1	1023	1043	1034	-33.10	-23.30	0.70392749244713	10	3-18,1041-1026	1-2,1043-1042[UP5];19-21,1025-1023[UP3]	...((((((((((((((((..&..))))))))))))))))...	CGGAAGGACCUGGAGGAGGAA&AACCUCCUUUGGGUUUUUGAU	3	0.998553729525394	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a756_TRINITY_DN9998_c0_g1_1034_TPlot.pdf
TRINITY_DN9998_c0_g1:1036	si_a754	TRINITY_DN9998_c0_g1	1025	1050	1036	-34.60	-23.40	0.676300578034682	14.5	1-4,1050-1047;5-20,1041-1026	x-x,1046-1042[BULt];21-21,1025-1025[UP3]	.((((((((((((((((.....((((&))))-----)))))))))))))))).	GAAGGACCUGGAGGAGGAAUAAUUCA&UGAA-----CCUCCUUUGGGUUUUUG	2	0.979415119641226	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a754_TRINITY_DN9998_c0_g1_1036_TPlot.pdf
TRINITY_DN9998_c0_g1:1037	si_a753	TRINITY_DN9998_c0_g1	1026	1051	1037	-33.10	-22.90	0.691842900302115	14	2-5,1050-1047;6-21,1041-1026	1-1,1051-1051[UP5];x-x,1046-1042[BULt]	((((((((((((((((.....((((.&.))))-----))))))))))))))))	AAGGACCUGGAGGAGGAAUAAUUCAG&AUGAA-----CCUCCUUUGGGUUUUU	2	0.977819051691106	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a753_TRINITY_DN9998_c0_g1_1037_TPlot.pdf
TRINITY_DN9998_c0_g1:1045	si_a327	TRINITY_DN9998_c0_g1	1034	1057	1045	-28.40	-19.80	0.697183098591549	11.5	2-8,1056-1050;9-17,1046-1038;19-21,1036-1034	1-1,1057-1057[UP5];x-x,1049-1047[BULt];18-18,1037-1037[SIL]	(((.(((((((((...(((((((.&.)))))))---))))))))).)))	GGAGGAGGAAUAAUUCAGGGAUCU&UGAUUUUU---UUAUUCCUUGUCC	2	0.99435845838285	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a327_TRINITY_DN9998_c0_g1_1045_TPlot.pdf
TRINITY_DN9998_c0_g1:2737	si_s82	TRINITY_DN9998_c0_g1	2726	2746	2737	-28.90	-20.40	0.705882352941176	5	1-8,2746-2739;10-19,2737-2728	9-9,2738-2738[SIL];20-21,2727-2726[UP3]	..((((((((((.((((((((&)))))))).))))))))))..	UUGAAGGGGAAAUGAAAGAAA&UUUCUUUCCUUUCUUCUUCUU	4	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s82_TRINITY_DN9998_c0_g1_2737_TPlot.pdf
TRINITY_DN9998_c0_g1:2740	si_s79	TRINITY_DN9998_c0_g1	2729	2749	2740	-26.20	-19.70	0.751908396946565	3	1-11,2749-2739;13-21,2737-2729	12-12,2738-2738[SIL]	(((((((((.(((((((((((&))))))))))).)))))))))	AAGGGGAAAUGAAAGAAAAAA&UUUUUUCUUUCCUUUCUUCUU	4	0.999999999996916	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s79_TRINITY_DN9998_c0_g1_2740_TPlot.pdf
TRINITY_DN9998_c0_g1:2743	si_s72	TRINITY_DN9998_c0_g1	2731	2752	2743	-24.10	-16.90	0.701244813278008	5	1-4,2752-2749;6-14,2747-2739;15-21,2737-2731	5-5,2748-2748[SIL];x-x,2738-2738[BULt]	(((((((.(((((((((.((((&)))).)))))))))-)))))))	GGGGAAAUGAAAGAAAAAAGAA&UUCUAUUUUUUUUC-UUUCCUU	3	1	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s72_TRINITY_DN9998_c0_g1_2743_TPlot.pdf
TRINITY_DN9998_c0_g1:2744	si_s71	TRINITY_DN9998_c0_g1	2732	2753	2744	-25.70	-18.90	0.735408560311284	4.5	1-5,2753-2749;7-15,2747-2739;16-21,2737-2732	6-6,2748-2748[SIL];x-x,2738-2738[BULt]	((((((.(((((((((.(((((&))))).)))))))))-))))))	GGGAAAUGAAAGAAAAAAGAAG&CUUCUAUUUUUUUUC-UUUCCU	4	0.999999992133814	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s71_TRINITY_DN9998_c0_g1_2744_TPlot.pdf
TRINITY_DN9998_c0_g1:2745	si_s70	TRINITY_DN9998_c0_g1	2733	2754	2745	-25.80	-18.20	0.705426356589147	5	2-6,2753-2749;8-16,2747-2739;17-21,2737-2733	1-1,2754-2754[UP5];7-7,2748-2748[SIL];x-x,2738-2738[BULt]	(((((.(((((((((.(((((.&.))))).)))))))))-)))))	GGAAAUGAAAGAAAAAAGAAGC&ACUUCUAUUUUUUUUC-UUUCC	3	0.999999999986679	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s70_TRINITY_DN9998_c0_g1_2745_TPlot.pdf
TRINITY_DN9998_c0_g1:635	si_a624	TRINITY_DN9998_c0_g1	620	644	635	-32.30	-21.40	0.662538699690402	14.5	1-9,644-636;11-12,634-633;13-19,628-622	10-10,635-635[SIL];x-x,632-629[BULt];20-21,621-620[UP3]	..(((((((....((.(((((((((&))))))))).))----)))))))..	AUGUCGACAGAAUUAUUAUGCCUGG&CUAGGCGUAUUA----UGUCGAUUU	2	0.901232204407225	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_a624_TRINITY_DN9998_c0_g1_635_TPlot.pdf
TRINITY_DN9998_c0_g1:915	si_s481	TRINITY_DN9998_c0_g1	906	924	915	-23.00	-15.10	0.656521739130435	8.5	1-10,924-915;13-20,914-907	11-12,x-x[BULq];21-21,906-906[UP3]	.((((((((--((((((((((&))))))))))..)))))))).	GAUUUGGAU--GUGUAGGAUU&GAUCCUAUAUUUAUUUAAAUA	2	0.997293017398465	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s481_TRINITY_DN9998_c0_g1_915_TPlot.pdf
TRINITY_DN99_c0_g1:558	si_s62	TRINITY_DN99_c0_g1	546	567	558	-26.50	-17.40	0.656603773584906	8.5	3-10,565-558;11-21,556-546	1-2,567-566[UP5];x-x,557-557[BULt]	(((((((((((.((((((((..&..))))))))-)))))))))))	GAGAAAUGGAAUGUUGUUAGAA&AGUUAGCAAC-UUCUAUUUUUU	3	0.999994359766277	/home/kira/Desktop/CleaveLand4-4.5/degradome_CPB_Hop/CPB_degradome_output/hop_degradome/si_s62_TRINITY_DN99_c0_g1_558_TPlot.pdf
